C10153 WUBlastX LTR_Pao 3 158 109 - . . C10177 WUBlastX LINE_L2 2 157 97 - . . C10191 WUBlastX LTR_Copia 2 157 174 - . . C10245 WUBlastX LINE_Penelope 5 154 59 - . . C10291 WUBlastX LTR_Copia 2 160 85 - . . C10475 WUBlastX LINE_L1-Tx1 3 149 50 - . . C10673 WUBlastX LTR_DIRS 37 162 59 + . . C10675 WUBlastX LINE_L2 1 165 132 + . . C10805 WUBlastX LINE_I 1 168 100 - . . C10973 WUBlastX LTR_Gypsy 3 167 186 + . . C11037 WUBlastX DNA_hAT-Tag1 2 91 65 - . . C11037 WUBlastX DNA_hAT-Tag1 2 148 44 - . . C11147 WUBlastX LTR_Gypsy 2 172 162 - . . C11324 WUBlastX LTR_Gypsy 1 174 204 + . . C11568 WUBlastX LTR_DIRS? 27 179 72 + . . C11584 WUBlastX LINE_RTE-X 1 177 95 - . . C11640 WUBlastX LTR_Ngaro 3 176 148 - . . C11826 WUBlastX LTR_Pao 2 181 150 - . . C12066 WUBlastX DNA_hAT-Tip100 3 185 155 + . . C12068 WUBlastX DNA_TcMar-Tc1 3 179 92 + . . C12264 WUBlastX LTR_Gypsy 2 190 154 + . . C12274 WUBlastX LTR_Pao 1 189 137 + . . C12288 WUBlastX LTR_Gypsy 14 190 208 + . . C12330 WUBlastX LINE_RTE-X 8 190 75 + . . C12348 WUBlastX LTR_Gypsy 4 156 82 - . . C12502 WUBlastX LTR_Gypsy 4 192 55 - . . C12568 WUBlastX LTR_Copia 2 196 270 - . . C12718 WUBlastX LINE_Penelope 10 192 109 - . . C12888 WUBlastX LTR_Gypsy 5 142 101 - . . C12888 WUBlastX LTR_Gypsy 5 178 98 - . . C12888 WUBlastX LTR_Gypsy 133 204 57 - . . C13272 WUBlastX LTR_Gypsy 7 201 77 - . . C13292 WUBlastX LINE_RTE-X 5 214 177 + . . C133 WUBlastX LTR_Gypsy-Cigr 3 95 40 - . . C13410 WUBlastX LTR_Copia 17 217 244 - . . C13424 WUBlastX LTR_Pao 11 217 123 - . . C137 WUBlastX LTR_Gypsy-Cigr 2 100 58 - . . C13946 WUBlastX DNA_hAT-Ac 7 129 42 - . . C13946 WUBlastX DNA_hAT-Ac 123 233 34 - . . C13980 WUBlastX LTR_Gypsy 3 233 256 - . . C14174 WUBlastX LTR_Gypsy 16 240 87 - . . C14210 WUBlastX LINE_RTE-BovB 5 241 165 + . . C14464 WUBlastX DNA_En-Spm 5 253 272 - . . C14550 WUBlastX LTR_Gypsy 24 158 126 - . . C14550 WUBlastX LTR_Gypsy 164 253 57 - . . C14658 WUBlastX LTR_Gypsy 1 261 301 + . . C14744 WUBlastX LTR_Gypsy 99 263 61 - . . C14746 WUBlastX LINE_RTE-BovB 1 267 182 + . . C14790 WUBlastX LINE_Penelope 2 268 52 + . . C14790 WUBlastX LINE_Penelope 50 268 86 + . . C14810 WUBlastX LTR_Gypsy 35 268 133 - . . C14862 WUBlastX LTR_Gypsy 10 264 307 - . . C14906 WUBlastX LINE_Penelope 4 258 29 + . . C14906 WUBlastX LINE_Penelope 46 258 56 + . . C14944 WUBlastX LINE_CR1-L2 18 275 160 - . . C14948 WUBlastX LINE_RTE-BovB 163 276 63 - . . C15012 WUBlastX LTR_Gypsy 2 277 177 - . . C15226 WUBlastX LTR_Gypsy 31 285 93 - . . C15226 WUBlastX LTR_Gypsy 124 288 104 - . . C15300 WUBlastX LTR_Copia 10 201 121 - . . C15326 WUBlastX LTR_Copia 1 294 352 + . . C15342 WUBlastX LINE_CR1-L2 14 271 65 + . . C15404 WUBlastX LTR_DIRS 1 246 178 + . . C15466 WUBlastX LINE_Penelope 14 304 172 + . . C15498 WUBlastX LTR_Gypsy-Troyk 126 305 149 + . . C15648 WUBlastX LTR_Gypsy 1 315 341 + . . C15852 WUBlastX LTR_Gypsy 4 312 329 - . . C15904 WUBlastX LINE_RTE-X 1 336 109 + . . C15904 WUBlastX LINE_RTE-X 61 336 140 + . . C15908 WUBlastX LINE_L1 6 329 64 - . . C15908 WUBlastX LINE_L2 75 323 71 - . . C15972 WUBlastX LTR_Gypsy 11 337 206 - . . C16036 WUBlastX DNA_IS 3 335 551 + . . C16106 WUBlastX LINE_RTE-X 9 350 58 + . . C16120 WUBlastX LTR_Gypsy 2 184 138 + . . C16120 WUBlastX LTR_Gypsy 208 351 104 + . . C16340 WUBlastX LINE_L1-Tx1 17 280 72 + . . C16408 WUBlastX DNA_En-Spm 16 375 201 - . . C16582 GLEAN mRNA 35 385 0.555898 - . ID=CGI_10000001; C16582 GLEAN promoter 386 395 0.555898 - . ID=CGI_10000001; C16654 WUBlastX LTR_Gypsy 3 401 526 + . . C16696 WUBlastX LTR_Gypsy 4 342 104 - . . C16696 WUBlastX LTR_Gypsy 25 405 47 - . . C16820 WUBlastX LINE_Penelope 39 350 63 - . . C16820 WUBlastX LINE_Penelope 96 320 76 - . . C16820 WUBlastX LINE_Penelope 132 308 84 - . . C17024 WUBlastX DNA_IS 1 441 696 - . . C17212 GLEAN promoter 1 30 0.999572 + . ID=CGI_10000002; C17212 GLEAN mRNA 31 363 0.999572 + . ID=CGI_10000002; C17316 GLEAN promoter 1 29 0.555898 + . ID=CGI_10000003; C17316 GLEAN mRNA 30 257 0.555898 + . ID=CGI_10000003; C17376 WUBlastX LINE_L1-Tx1 1 477 328 + . . C17476 GLEAN mRNA 34 257 0.998947 - . ID=CGI_10000004; C17476 GLEAN promoter 258 491 0.998947 - . ID=CGI_10000004; C17584 WUBlastX LTR_Gypsy 7 504 412 + . . C17636 WUBlastX LTR_Gypsy 226 507 116 + . . C17650 WUBlastX LTR_Gypsy 2 256 218 - . . C17650 WUBlastX LTR_Gypsy 261 338 77 - . . C17650 WUBlastX LTR_Gypsy 307 510 58 + . . C17730 WUBlastX LTR_DIRS 3 515 275 - . . C17998 GLEAN mRNA 196 387 1 - . ID=CGI_10000005; C17998 GLEAN promoter 388 559 1 - . ID=CGI_10000005; C18020 WUBlastX LTR_Gypsy 10 558 400 + . . C18064 WUBlastX LTR_Gypsy 18 284 267 + . . C18064 WUBlastX LTR_Gypsy 36 404 178 + . . C18324 WUBlastX LTR_Gypsy 68 508 165 + . . C18324 WUBlastX LTR_Gypsy 149 508 172 + . . C18324 WUBlastX LTR_Gypsy 323 559 73 + . . C18324 WUBlastX LTR_Gypsy 523 600 64 + . . C18346 GLEAN promoter 1 173 1 + . ID=CGI_10000009; C18346 GLEAN mRNA 174 551 1 + . ID=CGI_10000009; C18380 WUBlastX LTR_Gypsy 2 280 212 + . . C18380 WUBlastX LTR_Gypsy 280 606 190 + . . C18428 GLEAN mRNA 286 546 0.555898 - . ID=CGI_10000010; C18428 GLEAN promoter 547 611 0.555898 - . ID=CGI_10000010; C18562 WUBlastX LTR_Gypsy 3 632 576 - . . C18664 WUBlastX DNA_Helitron 2 559 211 + . . C18938 WUBlastX DNA_IS4EU 128 667 50 + . . C18964 GLEAN mRNA 203 658 0.999572 - . ID=CGI_10000011; C18964 GLEAN promoter 659 714 0.999572 - . ID=CGI_10000011; C18980 GLEAN promoter 1 29 0.555898 + . ID=CGI_10000012; C18980 GLEAN mRNA 30 674 0.555898 + . ID=CGI_10000012; C19100 GLEAN mRNA 160 681 0.999955 - . ID=CGI_10000013; C19100 GLEAN promoter 682 743 0.999955 - . ID=CGI_10000013; C1921 WUBlastX LTR_Gypsy 5 106 63 + . . C19356 GLEAN promoter 1 354 1 + . ID=CGI_10000014; C19356 GLEAN mRNA 355 597 1 + . ID=CGI_10000014; C19392 GLEAN promoter 1 45 1 + . ID=CGI_10000015; C19392 GLEAN mRNA 46 610 1 + . ID=CGI_10000015; C19510 GLEAN promoter 1 450 1 + . ID=CGI_10000016; C19510 GLEAN mRNA 451 702 1 + . ID=CGI_10000016; C19532 GLEAN mRNA 155 601 0.575455 - . ID=CGI_10000017; C19532 GLEAN promoter 602 843 0.575455 - . ID=CGI_10000017; C19570 GLEAN mRNA 208 411 0.555898 - . ID=CGI_10000018; C19570 GLEAN promoter 412 851 0.555898 - . ID=CGI_10000018; C19626 GLEAN mRNA 347 814 0.999572 - . ID=CGI_10000019; C19626 GLEAN promoter 815 862 0.999572 - . ID=CGI_10000019; C19672 GLEAN promoter 1 131 1 + . ID=CGI_10000021; C19672 GLEAN mRNA 132 464 1 + . ID=CGI_10000021; C19752 WUBlastX LTR_Gypsy 6 770 763 - . . C19752 WUBlastX LTR_Gypsy 689 883 156 - . . C19796 WUBlastX LTR_Gypsy 2 475 316 + . . C19818 WUBlastX LINE_RTE-BovB 3 899 1075 + . . C20058 WUBlastX LINE_L1-Tx1 51 464 60 - . . C20188 GLEAN mRNA 437 967 0.999572 - . ID=CGI_10000024; C20188 GLEAN promoter 968 997 0.999572 - . ID=CGI_10000024; C20262 GLEAN mRNA 222 1005 1 - . ID=CGI_10000025; C20262 GLEAN promoter 1006 1023 1 - . ID=CGI_10000025; C20282 GLEAN promoter 1 329 1 + . ID=CGI_10000026; C20282 GLEAN mRNA 330 980 1 + . ID=CGI_10000026; C20298 WUBlastX DNA_Harbinger 293 430 35 + . . C20324 WUBlastX LTR_Ngaro 272 625 54 + . . C20324 WUBlastX LTR_Ngaro 365 640 78 + . . C20334 GLEAN mRNA 273 1027 1 - . ID=CGI_10000028; C20334 GLEAN promoter 1028 1041 1 - . ID=CGI_10000028; C2035 WUBlastX LTR_Gypsy-Troyk 1 108 89 - . . C20412 GLEAN mRNA 73 776 1 - . ID=CGI_10000029; C20412 GLEAN promoter 777 1066 1 - . ID=CGI_10000029; C20458 WUBlastX DNA_IS 3 983 1603 - . . C20462 GLEAN promoter 1 2 1 + . ID=CGI_10000030; C20462 GLEAN mRNA 3 871 1 + . ID=CGI_10000030; C20464 WUBlastX LTR_Copia 1000 1083 86 + . . C20476 GLEAN promoter 1 146 1 + . ID=CGI_10000031; C20476 GLEAN mRNA 147 996 1 + . ID=CGI_10000031; C20480 GLEAN mRNA 367 1037 0.999572 - . ID=CGI_10000032; C20480 GLEAN promoter 1038 1088 0.999572 - . ID=CGI_10000032; C20524 GLEAN mRNA 6 1100 1 - . ID=CGI_10000033; C20524 GLEAN promoter 1101 1100 1 - . ID=CGI_10000033; C20530 WUBlastX DNA_IS4EU 135 365 107 + . . C20530 WUBlastX DNA_IS4EU 316 432 65 + . . C20530 WUBlastX DNA_IS4EU 503 787 101 + . . C20578 GLEAN promoter 1 698 0.555898 + . ID=CGI_10000034; C20578 GLEAN mRNA 699 950 0.555898 + . ID=CGI_10000034; C20582 GLEAN promoter 1 74 0.555898 + . ID=CGI_10000035; C20582 GLEAN mRNA 75 980 0.555898 + . ID=CGI_10000035; C20604 WUBlastX DNA_IS 2 1102 1814 + . . C20754 GLEAN mRNA 873 1161 1 - . ID=CGI_10000036; C20754 GLEAN promoter 1162 1186 1 - . ID=CGI_10000036; C20756 GLEAN mRNA 414 1142 0.999955 - . ID=CGI_10000037; C20756 GLEAN promoter 1143 1186 0.999955 - . ID=CGI_10000037; C20808 WUBlastX LINE_L1-Tx1 404 1198 66 - . . C20808 WUBlastX LINE_L1-Tx1 464 991 74 - . . C20884 GLEAN promoter 1 79 1 + . ID=CGI_10000038; C20884 GLEAN mRNA 80 971 1 + . ID=CGI_10000038; C20916 GLEAN mRNA 574 1222 1 - . ID=CGI_10000039; C20916 GLEAN promoter 1223 1232 1 - . ID=CGI_10000039; C20946 GLEAN mRNA 877 1192 0.734361 - . ID=CGI_10000040; C20946 GLEAN promoter 1193 1242 0.734361 - . ID=CGI_10000040; C21038 GLEAN promoter 1 73 1 + . ID=CGI_10000041; C21038 GLEAN mRNA 74 929 1 + . ID=CGI_10000041; C21044 WUBlastX DNA_IS 21 1238 2000 - . . C21046 GLEAN mRNA 570 812 1 - . ID=CGI_10000042; C21046 GLEAN promoter 813 1275 1 - . ID=CGI_10000042; C21064 GLEAN promoter 1 25 1 + . ID=CGI_10000043; C21064 GLEAN mRNA 26 1087 1 + . ID=CGI_10000043; C21102 GLEAN promoter 1 9 1 + . ID=CGI_10000044; C21102 GLEAN mRNA 10 483 1 + . ID=CGI_10000044; C21160 WUBlastX LINE_L2 191 1318 630 - . . C21178 GLEAN mRNA 456 1256 0.999572 - . ID=CGI_10000045; C21178 GLEAN promoter 1257 1326 0.999572 - . ID=CGI_10000045; C21190 WUBlastX LINE_RTE-BovB 15 113 87 - . . C21228 WUBlastX DNA_IS 101 1318 2000 + . . C21238 GLEAN promoter 1 40 1 + . ID=CGI_10000046; C21238 GLEAN mRNA 41 1260 1 + . ID=CGI_10000046; C21242 TRF Tandem_Repeat 38 100 72 + . . C21242 WUBlastX DNA_TcMar-Marin 415 741 48 + . . C21242 WUBlastX DNA_TcMar-Marin 580 726 53 + . . C21254 GLEAN promoter 1 669 0.999955 + . ID=CGI_10000047; C21254 GLEAN mRNA 670 1107 0.999955 + . ID=CGI_10000047; C21258 WUBlastX LTR_Copia 6 554 645 + . . C21260 GLEAN mRNA 500 1175 0.999991 - . ID=CGI_10000048; C21260 GLEAN promoter 1176 1343 0.999991 - . ID=CGI_10000048; C21282 GLEAN mRNA 284 686 0.999998 - . ID=CGI_10000049; C21282 GLEAN promoter 687 1350 0.999998 - . ID=CGI_10000049; C21306 TRF Tandem_Repeat 35 143 112 + . . C21306 TRF Tandem_Repeat 574 947 208 + . . C21306 TRF Tandem_Repeat 574 901 313 + . . C21306 WUBlastX DNA_Crypton 979 1281 119 + . . C21372 WUBlastX LINE_L1-Tx1 33 605 142 + . . C21372 TRF Tandem_Repeat 643 671 58 + . . C21376 WUBlastX LTR_Gypsy 65 403 92 + . . C21376 WUBlastX LTR_Gypsy 1177 1344 50 + . . C21380 WUBlastX LINE_Penelope 308 1318 344 - . . C21380 WUBlastX LINE_Penelope 947 1390 83 - . . C21396 WUBlastX LINE_L1-Tx1 373 1257 94 - . . C21396 WUBlastX LINE_L1-Tx1 499 1392 33 - . . C21496 WUBlastX DNA_IS 2 280 427 + . . C21496 WUBlastX DNA_IS 226 1128 1497 + . . C21496 WUBlastX DNA_IS 1208 1444 397 + . . C21500 GLEAN promoter 1 2 1 + . ID=CGI_10000050; C21500 GLEAN mRNA 3 1134 1 + . ID=CGI_10000050; C21510 WUBlastX LTR_Gypsy 11 1447 1822 + . . C21550 GLEAN mRNA 567 1460 1 - . ID=CGI_10000051; C21550 GLEAN promoter 1461 1465 1 - . ID=CGI_10000051; C21554 GLEAN promoter 1 22 1 + . ID=CGI_10000052; C21554 GLEAN mRNA 23 1038 1 + . ID=CGI_10000052; C21560 WUBlastX LINE_RTE-X 3 206 78 - . . C21572 GLEAN promoter 1 322 0.555898 + . ID=CGI_10000053; C21572 GLEAN mRNA 323 1183 0.555898 + . ID=CGI_10000053; C21582 GLEAN mRNA 261 1463 0.999999 - . ID=CGI_10000054; C21582 GLEAN promoter 1464 1473 0.999999 - . ID=CGI_10000054; C21590 GLEAN mRNA 447 1009 1 - . ID=CGI_10000055; C21590 GLEAN promoter 1010 1478 1 - . ID=CGI_10000055; C21616 GLEAN promoter 1 299 0.999999 + . ID=CGI_10000056; C21616 GLEAN mRNA 300 578 0.999999 + . ID=CGI_10000056; C21650 GLEAN mRNA 735 1484 1 - . ID=CGI_10000058; C21650 GLEAN promoter 1485 1500 1 - . ID=CGI_10000058; C21654 GLEAN mRNA 351 1109 0.555898 - . ID=CGI_10000057; C21654 GLEAN promoter 1110 1500 0.555898 - . ID=CGI_10000057; C21728 GLEAN mRNA 570 1423 1 - . ID=CGI_10000059; C21728 GLEAN promoter 1424 1532 1 - . ID=CGI_10000059; C21740 WUBlastX DNA_IS 261 1478 2000 + . . C21764 GLEAN mRNA 32 1484 1 - . ID=CGI_10000060; C21764 GLEAN promoter 1485 1547 1 - . ID=CGI_10000060; C21792 GLEAN promoter 1 975 1 + . ID=CGI_10000061; C21792 GLEAN mRNA 976 1407 1 + . ID=CGI_10000061; C21812 WUBlastX LINE_CR1-L2 968 1090 77 + . . C21812 WUBlastX LINE_CR1 968 1171 72 + . . C21812 WUBlastX LINE_CR1-L2 1235 1534 111 + . . C21834 GLEAN promoter 1 397 1 + . ID=CGI_10000062; C21834 GLEAN mRNA 398 1097 1 + . ID=CGI_10000062; C21862 GLEAN promoter 1 49 1 + . ID=CGI_10000063; C21862 GLEAN mRNA 50 1286 1 + . ID=CGI_10000063; C21870 GLEAN mRNA 17 1502 0.999999 - . ID=CGI_10000064; C21870 GLEAN promoter 1503 1595 0.999999 - . ID=CGI_10000064; C21988 WUBlastX LTR_DIRS 669 827 24 + . . C21988 WUBlastX LTR_DIRS 806 1459 72 + . . C21988 WUBlastX LTR_DIRS 1477 1644 26 + . . C21994 GLEAN promoter 1 24 1 + . ID=CGI_10000066; C21994 GLEAN mRNA 25 1536 1 + . ID=CGI_10000066; C22000 GLEAN promoter 1 3 1 + . ID=CGI_10000067; C22000 GLEAN mRNA 4 1360 1 + . ID=CGI_10000067; C22036 GLEAN promoter 1 947 0.999955 + . ID=CGI_10000068; C22036 GLEAN mRNA 948 1190 0.999955 + . ID=CGI_10000068; C22046 GLEAN promoter 1 97 1 + . ID=CGI_10000069; C22046 GLEAN mRNA 98 1281 1 + . ID=CGI_10000069; C2209 WUBlastX LTR_Pao 3 107 86 - . . C22096 GLEAN promoter 1 70 1 + . ID=CGI_10000070; C22096 GLEAN mRNA 71 1703 1 + . ID=CGI_10000070; C22136 GLEAN promoter 1 5 1 + . ID=CGI_10000071; C22136 GLEAN mRNA 6 1309 1 + . ID=CGI_10000071; C22138 WUBlastX LINE_L2 1 858 388 + . . C22142 GLEAN promoter 1 329 1 + . ID=CGI_10000072; C22142 GLEAN mRNA 330 1695 1 + . ID=CGI_10000072; C22174 WUBlastX LINE_L1-Tx1 18 1385 423 + . . C22194 GLEAN mRNA 136 1721 1 - . ID=CGI_10000073; C22194 GLEAN promoter 1722 1749 1 - . ID=CGI_10000073; C22212 WUBlastX LTR_Gypsy 7 609 354 - . . C22212 WUBlastX LTR_Gypsy 611 1717 691 - . . C22212 WUBlastX LTR_Gypsy 1622 1738 43 - . . C22220 GLEAN promoter 36 1035 1 + . ID=CGI_10000074; C22220 GLEAN mRNA 1036 1656 1 + . ID=CGI_10000074; C22248 GLEAN promoter 1 384 1 + . ID=CGI_10000075; C22248 GLEAN mRNA 385 654 1 + . ID=CGI_10000075; C22274 GLEAN mRNA 324 1076 1 - . ID=CGI_10000076; C22274 GLEAN promoter 1077 1787 1 - . ID=CGI_10000076; C22290 GLEAN mRNA 825 1649 1 - . ID=CGI_10000077; C22290 GLEAN promoter 1650 1794 1 - . ID=CGI_10000077; C22302 WUBlastX LINE_I 15 203 22 + . . C22302 WUBlastX LINE_CR1-L2 63 335 65 + . . C22312 WUBlastX LINE_RTE-X 46 372 63 + . . C22312 WUBlastX LINE_RTE-X 1065 1226 107 - . . C22322 WUBlastX LINE_L1 343 933 106 - . . C22322 WUBlastX LINE_L1-Tx1 343 813 126 - . . C22322 WUBlastX LINE_L1-Tx1 965 1507 205 - . . C22322 WUBlastX LINE_L1-Tx1 1459 1806 204 - . . C22344 GLEAN promoter 1 14 0.999676 + . ID=CGI_10000078; C22344 GLEAN mRNA 15 1304 0.999676 + . ID=CGI_10000078; C22346 GLEAN mRNA 495 755 0.997359 - . ID=CGI_10000079; C22346 GLEAN promoter 756 1755 0.997359 - . ID=CGI_10000079; C22360 WUBlastX LTR_DIRS 40 585 151 + . . C22360 WUBlastX LTR_DIRS 554 1018 290 + . . C22388 GLEAN mRNA 1362 1775 1 - . ID=CGI_10000080; C22388 GLEAN promoter 1776 1829 1 - . ID=CGI_10000080; C22400 WUBlastX LINE_RTE-X 3 1697 451 - . . C22400 WUBlastX LINE_L2 1533 1751 28 - . . C22400 WUBlastX LINE_L2 1581 1784 20 - . . C22430 GLEAN promoter 1 262 0.555898 + . ID=CGI_10000081; C22430 WUBlastX DNA_TcMar-Tc2 230 493 60 + . . C22430 GLEAN mRNA 263 553 0.555898 + . ID=CGI_10000081; C22430 WUBlastX LTR_Gypsy 1462 1584 92 + . . C22430 WUBlastX LTR_Gypsy 1468 1623 52 + . . C22430 WUBlastX LTR_Gypsy 1468 1734 29 + . . C22430 WUBlastX LTR_Gypsy 1605 1667 47 + . . C22456 GLEAN promoter 1 21 1 + . ID=CGI_10000082; C22456 GLEAN mRNA 22 607 1 + . ID=CGI_10000082; C22458 WUBlastX LTR_Ngaro 2 868 328 - . . C22458 WUBlastX LTR_Ngaro 856 1845 799 - . . C22492 GLEAN promoter 1 227 1 + . ID=CGI_10000083; C22492 GLEAN mRNA 228 1476 1 + . ID=CGI_10000083; C22494 WUBlastX LTR_Pao 3 941 88 - . . C22494 WUBlastX LTR_Pao 18 353 100 - . . C22518 WUBlastX LINE_RTE-X 699 1781 403 - . . C22518 WUBlastX LINE_L2 1314 1868 78 - . . C22542 WUBlastX LINE_L1-Tx1 62 175 23 - . . C22542 WUBlastX LINE_L1-Tx1 80 169 29 - . . C22542 WUBlastX LINE_R2 95 169 45 - . . C22542 WUBlastX LINE_L1 169 1143 221 - . . C22542 WUBlastX LINE_L1-Tx1 169 891 232 - . . C22542 WUBlastX LINE_L1-Tx1 1146 1496 222 - . . C22542 WUBlastX LINE_L1 1161 1622 92 - . . C22542 TRF Tandem_Repeat 1727 1774 96 + . . C22570 WUBlastX LINE_L1 2 361 114 - . . C22570 WUBlastX LINE_L1-Tx1 2 457 35 - . . C22570 WUBlastX LINE_L1 11 580 27 - . . C22624 GLEAN mRNA 1088 1891 0.734569 - . ID=CGI_10000084; C22624 GLEAN promoter 1892 1916 0.734569 - . ID=CGI_10000084; C22628 WUBlastX LINE_RTE-X 355 660 32 + . . C22638 GLEAN promoter 1 37 1 + . ID=CGI_10000085; C22638 GLEAN mRNA 38 1762 1 + . ID=CGI_10000085; C22644 WUBlastX DNA_TcMar-Tc1 177 317 84 - . . C22644 WUBlastX DNA_TcMar-Tc1 286 723 257 - . . C22644 WUBlastX DNA_TcMar-Tc1 768 968 40 - . . C22682 GLEAN mRNA 526 1390 1 - . ID=CGI_10000086; C22682 GLEAN promoter 1391 1940 1 - . ID=CGI_10000086; C22710 WUBlastX LTR_DIRS 333 467 43 - . . C22710 WUBlastX LTR_DIRS 945 1031 24 - . . C22710 WUBlastX LTR_DIRS 963 1052 40 - . . C22710 WUBlastX LTR_DIRS 963 1070 36 - . . C22712 GLEAN mRNA 173 1843 0.999572 - . ID=CGI_10000087; C22712 GLEAN promoter 1844 1949 0.999572 - . ID=CGI_10000087; C22728 TRF Tandem_Repeat 426 491 105 + . . C22728 WUBlastX DNA_Harbinger 1696 1905 25 + . . C22754 WUBlastX LINE_RTE-X 460 1452 370 - . . C22754 WUBlastX LINE_RTE-X 1126 1584 43 - . . C22754 WUBlastX LINE_RTE-X 1818 1889 32 + . . C22754 WUBlastX LINE_RTE-X 1892 1966 50 + . . C22772 WUBlastX LINE_L1 2 217 83 - . . C22772 WUBlastX LINE_L1-Tx1 2 169 86 - . . C22798 GLEAN promoter 1 432 1 + . ID=CGI_10000088; C22798 GLEAN mRNA 433 1785 1 + . ID=CGI_10000088; C22804 WUBlastX DNA_Crypton 439 1647 199 - . . C22870 GLEAN mRNA 348 1496 1 - . ID=CGI_10000091; C22870 GLEAN promoter 1497 1998 1 - . ID=CGI_10000091; C22892 GLEAN promoter 1 125 0.499955 + . ID=CGI_10000092; C22892 GLEAN mRNA 126 785 0.499955 + . ID=CGI_10000092; C22928 WUBlastX LINE_L1-Tx1 5 1843 594 + . . C22930 WUBlastX LTR_Gypsy 49 198 110 - . . C22930 WUBlastX LTR_Gypsy 49 243 80 - . . C22930 WUBlastX LTR_Gypsy 189 341 77 - . . C22940 GLEAN promoter 1 7 0.593391 + . ID=CGI_10000093; C22940 GLEAN mRNA 8 1533 0.593391 + . ID=CGI_10000093; C22948 GLEAN mRNA 180 1880 1 - . ID=CGI_10000094; C22948 GLEAN promoter 1881 2025 1 - . ID=CGI_10000094; C22968 GLEAN promoter 1 35 1 + . ID=CGI_10000095; C22968 GLEAN mRNA 36 1677 1 + . ID=CGI_10000095; C22972 GLEAN mRNA 493 1741 1 - . ID=CGI_10000096; C22972 GLEAN promoter 1742 2036 1 - . ID=CGI_10000096; C22978 WUBlastX LINE_L1-Tx1 501 2015 203 - . . C22996 WUBlastX LTR_Gypsy 11 397 222 - . . C22996 WUBlastX LTR_Gypsy 17 472 51 - . . C22996 WUBlastX LTR_Gypsy 580 1440 104 - . . C22996 WUBlastX LTR_Gypsy 721 1740 69 - . . C22996 WUBlastX LTR_Gypsy 727 1494 395 - . . C22998 WUBlastX LINE_L1 1 120 60 - . . C22998 WUBlastX LINE_L1 45 275 75 - . . C22998 WUBlastX LINE_L1 84 275 95 - . . C22998 WUBlastX LINE_L1 126 311 62 - . . C22998 WUBlastX LINE_L1 126 395 30 - . . C22998 WUBlastX LINE_L1-Tx1 135 275 113 - . . C22998 WUBlastX LINE_L1 144 341 52 - . . C23000 GLEAN promoter 1 78 1 + . ID=CGI_10000097; C23000 GLEAN mRNA 79 1658 1 + . ID=CGI_10000097; C23024 WUBlastX LINE_Penelope 3 545 189 - . . C23024 WUBlastX LINE_Penelope 354 581 51 - . . C23036 GLEAN mRNA 953 1982 1 - . ID=CGI_10000098; C23036 GLEAN promoter 1983 2062 1 - . ID=CGI_10000098; C23048 GLEAN mRNA 670 1143 1 - . ID=CGI_10000100; C23048 GLEAN promoter 1144 2068 1 - . ID=CGI_10000100; C23096 GLEAN mRNA 93 1954 1 - . ID=CGI_10000101; C23096 GLEAN promoter 1955 2083 1 - . ID=CGI_10000101; C23114 WUBlastX LTR_Gypsy 6 2093 1878 + . . C23120 WUBlastX LINE_Penelope 664 834 75 - . . C23154 GLEAN promoter 1 35 1 + . ID=CGI_10000102; C23154 GLEAN mRNA 36 1657 1 + . ID=CGI_10000102; C23172 GLEAN promoter 1 294 0.617988 + . ID=CGI_10000103; C23172 GLEAN promoter 275 1274 0.999375 + . ID=CGI_10000104; C23172 GLEAN mRNA 295 528 0.617988 + . ID=CGI_10000103; C23172 GLEAN promoter 545 1544 0.999372 + . ID=CGI_10000105; C23172 GLEAN mRNA 1275 1535 0.999375 + . ID=CGI_10000104; C23172 GLEAN mRNA 1545 1775 0.999372 + . ID=CGI_10000105; C23180 GLEAN promoter 1 153 1 + . ID=CGI_10000106; C23180 GLEAN mRNA 154 1429 1 + . ID=CGI_10000106; C23192 GLEAN promoter 1 424 1 + . ID=CGI_10000107; C23192 GLEAN mRNA 425 1865 1 + . ID=CGI_10000107; C23216 WUBlastX LTR_Gypsy 886 1221 62 - . . C23216 WUBlastX LTR_Gypsy 1129 1731 50 - . . C23216 WUBlastX LTR_Gypsy 1351 1824 98 - . . C23216 WUBlastX LTR_Gypsy 1723 2145 53 - . . C23216 WUBlastX LTR_Gypsy 1981 2145 70 - . . C23232 WUBlastX RC_Helitron 1 1128 669 - . . C23232 WUBlastX RC_Helitron 661 2154 853 - . . C23248 WUBlastX LINE_L1-Tx1 860 1003 28 - . . C23248 WUBlastX LINE_L1-Tx1 1011 2162 249 - . . C23272 GLEAN mRNA 76 972 1 - . ID=CGI_10000110; C23272 GLEAN promoter 973 1972 1 - . ID=CGI_10000110; C23272 GLEAN mRNA 1276 1488 1 - . ID=CGI_10000111; C23272 GLEAN promoter 1489 2171 1 - . ID=CGI_10000111; C23274 GLEAN mRNA 640 2141 1 - . ID=CGI_10000112; C23274 GLEAN promoter 2142 2173 1 - . ID=CGI_10000112; C23298 GLEAN mRNA 362 2187 1 - . ID=CGI_10000113; C23298 GLEAN promoter 2188 2189 1 - . ID=CGI_10000113; C23316 WUBlastX LTR_Ngaro 6 524 402 - . . C23316 WUBlastX LTR_Ngaro 547 660 32 - . . C23316 GLEAN mRNA 644 1111 0.999999 - . ID=CGI_10000116; C23316 WUBlastX LTR_Ngaro 929 1675 117 - . . C23316 WUBlastX LTR_Ngaro 953 1489 157 - . . C23316 GLEAN promoter 1112 2111 0.999999 - . ID=CGI_10000116; C23318 GLEAN promoter 1 983 0.999989 + . ID=CGI_10000115; C23318 GLEAN mRNA 984 2021 0.999989 + . ID=CGI_10000115; C23366 GLEAN promoter 1 93 0.999875 + . ID=CGI_10000118; C23366 GLEAN mRNA 94 761 0.999875 + . ID=CGI_10000118; C23366 GLEAN mRNA 982 1658 0.993577 - . ID=CGI_10000119; C23366 GLEAN promoter 1659 2219 0.993577 - . ID=CGI_10000119; C23372 GLEAN promoter 1 700 1 + . ID=CGI_10000120; C23372 GLEAN mRNA 701 1783 1 + . ID=CGI_10000120; C23390 GLEAN mRNA 369 1622 1 - . ID=CGI_10000121; C23390 GLEAN promoter 1623 2228 1 - . ID=CGI_10000121; C23400 WUBlastX LINE_L2 8 502 132 + . . C23400 WUBlastX LINE_L1-Tx1 880 2199 785 + . . C23422 GLEAN promoter 1 296 1 + . ID=CGI_10000122; C23422 GLEAN mRNA 297 1155 1 + . ID=CGI_10000122; C23424 GLEAN mRNA 323 1476 1 - . ID=CGI_10000123; C23424 GLEAN promoter 1477 2245 1 - . ID=CGI_10000123; C23426 GLEAN mRNA 306 2243 1 - . ID=CGI_10000124; C23426 GLEAN promoter 2244 2245 1 - . ID=CGI_10000124; C23428 TRF Tandem_Repeat 130 415 202 + . . C23428 WUBlastX LTR_Ngaro 899 1960 318 - . . C23428 WUBlastX LTR_Ngaro 947 1723 319 - . . C23428 WUBlastX LTR_Ngaro 1897 2163 183 - . . C23428 WUBlastX LTR_Ngaro 1921 2220 85 - . . C23428 WUBlastX LTR_Ngaro 2166 2246 37 - . . C23432 GLEAN mRNA 373 1948 1 - . ID=CGI_10000125; C23432 GLEAN promoter 1949 2251 1 - . ID=CGI_10000125; C23442 GLEAN mRNA 1194 2195 0.534511 - . ID=CGI_10000126; C23442 GLEAN promoter 2196 2257 0.534511 - . ID=CGI_10000126; C23446 GLEAN promoter 1 62 0.998748 + . ID=CGI_10000127; C23446 GLEAN mRNA 63 287 0.998748 + . ID=CGI_10000127; C23470 GLEAN promoter 1 583 1 + . ID=CGI_10000129; C23470 GLEAN mRNA 584 1507 1 + . ID=CGI_10000129; C23472 GLEAN promoter 1 98 0.999999 + . ID=CGI_10000130; C23472 GLEAN mRNA 99 1728 0.999999 + . ID=CGI_10000130; C23484 WUBlastX DNA_IS4EU 3 323 265 + . . C23484 WUBlastX DNA_IS4EU 625 1611 171 - . . C23484 WUBlastX DNA_IS4EU 910 1575 227 - . . C23484 WUBlastX DNA_IS4EU 2106 2279 98 - . . C23494 GLEAN mRNA 113 2225 0.777732 - . ID=CGI_10000131; C23494 GLEAN promoter 2226 2286 0.777732 - . ID=CGI_10000131; C23498 GLEAN promoter 1 81 1 + . ID=CGI_10000132; C23498 GLEAN mRNA 82 2153 1 + . ID=CGI_10000132; C23512 GLEAN promoter 1 744 1 + . ID=CGI_10000133; C23512 GLEAN mRNA 745 942 1 + . ID=CGI_10000133; C23514 WUBlastX DNA_Sola 1789 2169 75 + . . C23564 GLEAN promoter 1 15 1 + . ID=CGI_10000134; C23564 GLEAN mRNA 16 2270 1 + . ID=CGI_10000134; C23566 GLEAN promoter 1 419 1 + . ID=CGI_10000135; C23566 GLEAN mRNA 420 2232 1 + . ID=CGI_10000135; C23580 GLEAN mRNA 344 1388 0.997044 - . ID=CGI_10000136; C23580 GLEAN promoter 1389 2329 0.997044 - . ID=CGI_10000136; C23582 GLEAN promoter 1 36 1 + . ID=CGI_10000137; C23582 GLEAN mRNA 37 1356 1 + . ID=CGI_10000137; C23586 GLEAN promoter 1 22 1 + . ID=CGI_10000138; C23586 GLEAN mRNA 23 1564 1 + . ID=CGI_10000138; C23592 GLEAN promoter 1 143 0.841405 + . ID=CGI_10000139; C23592 GLEAN mRNA 144 2045 0.841405 + . ID=CGI_10000139; C23608 GLEAN mRNA 54 449 0.999372 - . ID=CGI_10000140; C23608 GLEAN promoter 450 1449 0.999372 - . ID=CGI_10000140; C23630 GLEAN promoter 1 6 0.991718 + . ID=CGI_10000141; C23630 GLEAN mRNA 7 1968 0.991718 + . ID=CGI_10000141; C23638 GLEAN promoter 693 1692 0.999375 + . ID=CGI_10000142; C23638 GLEAN promoter 963 1962 0.999372 + . ID=CGI_10000143; C23638 GLEAN mRNA 1693 1953 0.999375 + . ID=CGI_10000142; C23638 GLEAN mRNA 1963 2193 0.999372 + . ID=CGI_10000143; C23642 GLEAN promoter 1 68 0.999051 + . ID=CGI_10000144; C23642 GLEAN mRNA 69 1953 0.999051 + . ID=CGI_10000144; C23676 GLEAN promoter 1 33 1 + . ID=CGI_10000145; C23676 GLEAN mRNA 34 2210 1 + . ID=CGI_10000145; C23682 WUBlastX LINE_L1 1382 1573 28 - . . C23682 WUBlastX LINE_L1-Tx1 2087 2209 32 - . . C23686 GLEAN mRNA 1160 1636 0.618241 - . ID=CGI_10000146; C23686 GLEAN promoter 1637 2385 0.618241 - . ID=CGI_10000146; C23702 GLEAN mRNA 22 1781 1 - . ID=CGI_10000147; C23702 GLEAN promoter 1782 2394 1 - . ID=CGI_10000147; C23732 GLEAN mRNA 1939 2391 0.999372 - . ID=CGI_10000148; C23732 GLEAN promoter 2392 2404 0.999372 - . ID=CGI_10000148; C23734 WUBlastX LTR_Gypsy 23 724 246 - . . C23734 WUBlastX LTR_Gypsy 26 964 217 - . . C23734 GLEAN mRNA 512 712 1 - . ID=CGI_10000149; C23734 GLEAN promoter 713 1712 1 - . ID=CGI_10000149; C23742 WUBlastX LINE_L2 10 765 289 - . . C23742 WUBlastX LINE_CR1-L2 735 797 57 - . . C23742 WUBlastX LINE_L2 785 1255 226 - . . C23742 WUBlastX LINE_L2 803 1375 210 - . . C23760 GLEAN mRNA 227 457 0.999372 - . ID=CGI_10000150; C23760 GLEAN promoter 411 1410 1 + . ID=CGI_10000152; C23760 GLEAN promoter 458 1457 0.999372 - . ID=CGI_10000150; C23760 GLEAN mRNA 467 727 1 - . ID=CGI_10000151; C23760 GLEAN promoter 728 1727 1 - . ID=CGI_10000151; C23760 GLEAN mRNA 1411 2058 1 + . ID=CGI_10000152; C23772 WUBlastX DNA_Crypton 761 1438 163 - . . C23772 WUBlastX DNA_Crypton 1019 1366 169 - . . C23772 WUBlastX DNA_Crypton 1543 1782 78 - . . C23772 WUBlastX DNA_Crypton 1600 2217 336 - . . C23776 GLEAN promoter 1 320 1 + . ID=CGI_10000153; C23776 GLEAN mRNA 321 2310 1 + . ID=CGI_10000153; C23778 WUBlastX DNA_IS4EU 39 575 320 - . . C23778 WUBlastX DNA_IS4EU 572 1474 502 - . . C23786 WUBlastX LINE_RTE-X 613 1401 185 - . . C23786 WUBlastX LINE_RTE-X 775 1407 187 - . . C23786 WUBlastX LINE_RTE-X 1404 1805 242 - . . C23786 WUBlastX LINE_CR1 1407 1988 31 - . . C23796 TRF Tandem_Repeat 547 608 97 + . . C23796 WUBlastX LINE_L2 1547 2428 320 - . . C23818 GLEAN promoter 1 455 0.555898 + . ID=CGI_10000154; C23818 GLEAN mRNA 456 641 0.555898 + . ID=CGI_10000154; C23818 GLEAN mRNA 1923 2162 0.999244 - . ID=CGI_10000155; C23818 GLEAN promoter 2163 2439 0.999244 - . ID=CGI_10000155; C23828 GLEAN mRNA 439 2103 1 - . ID=CGI_10000156; C23828 GLEAN promoter 2104 2445 1 - . ID=CGI_10000156; C23836 WUBlastX LINE_L2 637 1191 77 - . . C23836 WUBlastX LINE_RTE-X 691 1005 84 - . . C23836 WUBlastX LTR_Ngaro 1247 2185 337 - . . C23836 WUBlastX LTR_Ngaro 2146 2442 167 - . . C23852 GLEAN mRNA 839 1618 0.996199 - . ID=CGI_10000158; C23852 GLEAN promoter 1619 2454 0.996199 - . ID=CGI_10000158; C23852 GLEAN mRNA 1621 2244 0.69447 - . ID=CGI_10000159; C23852 GLEAN promoter 2245 2454 0.69447 - . ID=CGI_10000159; C23860 WUBlastX LINE_L2 1556 2410 364 + . . C23888 GLEAN mRNA 1103 2107 0.998548 - . ID=CGI_10000162; C23888 GLEAN promoter 2108 2478 0.998548 - . ID=CGI_10000162; C23900 GLEAN promoter 1 2 1 + . ID=CGI_10000163; C23900 GLEAN mRNA 3 1904 1 + . ID=CGI_10000163; C23922 GLEAN promoter 1 388 0.69447 + . ID=CGI_10000164; C23922 GLEAN mRNA 389 583 0.69447 + . ID=CGI_10000164; C23922 WUBlastX LINE_L1-Tx1 1641 2441 409 + . . C24000 WUBlastX LINE_L1-Tx1 4 2517 1255 - . . C24020 GLEAN promoter 443 1442 0.481128 + . ID=CGI_10000168; C24020 GLEAN mRNA 1443 1823 0.481128 + . ID=CGI_10000168; C24022 GLEAN promoter 1 221 0.999372 + . ID=CGI_10000169; C24022 GLEAN mRNA 222 401 0.999372 + . ID=CGI_10000169; C24030 GLEAN promoter 32 1031 0.998023 + . ID=CGI_10000170; C24030 GLEAN promoter 794 1793 1 + . ID=CGI_10000171; C24030 GLEAN mRNA 1032 1635 0.998023 + . ID=CGI_10000170; C24030 GLEAN mRNA 1794 2168 1 + . ID=CGI_10000171; C24036 WUBlastX LTR_Gypsy 2 1000 873 + . . C24036 WUBlastX LTR_Gypsy 2 1186 765 + . . C24036 WUBlastX LTR_Copia 1512 1583 20 + . . C24068 GLEAN promoter 1 728 0.777738 + . ID=CGI_10000172; C24068 GLEAN promoter 382 1381 0.615405 + . ID=CGI_10000173; C24068 GLEAN mRNA 729 1125 0.777738 + . ID=CGI_10000172; C24068 GLEAN mRNA 1382 1795 0.615405 + . ID=CGI_10000173; C24112 GLEAN mRNA 19 2498 1 - . ID=CGI_10000174; C24112 GLEAN promoter 2499 2580 1 - . ID=CGI_10000174; C24114 GLEAN mRNA 855 2168 0.998274 - . ID=CGI_10000175; C24114 GLEAN promoter 2169 2580 0.998274 - . ID=CGI_10000175; C24116 GLEAN promoter 1 138 1 + . ID=CGI_10000176; C24116 GLEAN mRNA 139 2475 1 + . ID=CGI_10000176; C24128 GLEAN promoter 1101 2100 0.999372 + . ID=CGI_10000178; C24128 GLEAN mRNA 2101 2328 0.999372 + . ID=CGI_10000178; C24148 WUBlastX LINE_CR1 710 766 26 + . . C24148 WUBlastX LINE_CR1-L2 728 766 27 + . . C24148 WUBlastX LINE_CR1-L2 926 1318 57 + . . C24148 WUBlastX LINE_RTE-X 1542 1982 123 + . . C24158 GLEAN promoter 549 1548 1 + . ID=CGI_10000180; C24158 GLEAN mRNA 1549 2413 1 + . ID=CGI_10000180; C24184 WUBlastX LTR_Gypsy 2 343 313 + . . C24184 WUBlastX LTR_Gypsy 310 1335 653 + . . C24184 GLEAN mRNA 1846 2611 1 - . ID=CGI_10000181; C24184 GLEAN promoter 2612 2613 1 - . ID=CGI_10000181; C24232 GLEAN mRNA 589 2415 1 - . ID=CGI_10000183; C24232 GLEAN promoter 2416 2633 1 - . ID=CGI_10000183; C24244 GLEAN promoter 1 485 0.999999 + . ID=CGI_10000184; C24244 GLEAN mRNA 486 920 0.999999 + . ID=CGI_10000184; C24244 GLEAN mRNA 1138 1728 0.481188 - . ID=CGI_10000185; C24244 GLEAN promoter 1729 2637 0.481188 - . ID=CGI_10000185; C24254 GLEAN mRNA 195 395 0.999372 - . ID=CGI_10000186; C24254 GLEAN promoter 396 1395 0.999372 - . ID=CGI_10000186; C24270 GLEAN mRNA 888 2093 0.996819 - . ID=CGI_10000187; C24270 GLEAN promoter 2094 2649 0.996819 - . ID=CGI_10000187; C24292 GLEAN promoter 488 1487 0.996819 + . ID=CGI_10000188; C24292 GLEAN mRNA 1488 2144 0.996819 + . ID=CGI_10000188; C24304 WUBlastX RC_Helitron 1515 1685 90 - . . C24316 GLEAN promoter 1 878 0.999372 + . ID=CGI_10000189; C24316 GLEAN mRNA 879 1202 0.999372 + . ID=CGI_10000189; C24320 GLEAN mRNA 639 2117 0.999372 - . ID=CGI_10000190; C24320 WUBlastX LTR_ERV1 1545 1904 27 - . . C24320 GLEAN promoter 2118 2675 0.999372 - . ID=CGI_10000190; C24342 GLEAN mRNA 55 1954 0.965358 - . ID=CGI_10000191; C24342 GLEAN promoter 1955 2688 0.965358 - . ID=CGI_10000191; C24346 WUBlastX LINE_L1-Tx1 66 2069 799 + . . C24346 WUBlastX LINE_L1-Tx1 2098 2688 204 + . . C24396 WUBlastX LINE_L1 1655 1957 28 - . . C24396 WUBlastX LINE_L1 1655 2029 25 - . . C24400 GLEAN mRNA 37 2670 1 - . ID=CGI_10000194; C24400 GLEAN promoter 2671 2715 1 - . ID=CGI_10000194; C24420 GLEAN promoter 1 379 1 + . ID=CGI_10000195; C24420 GLEAN mRNA 380 1819 1 + . ID=CGI_10000195; C24428 GLEAN mRNA 1394 2614 0.999372 - . ID=CGI_10000196; C24428 GLEAN promoter 2615 2737 0.999372 - . ID=CGI_10000196; C24440 WUBlastX DNA_IS4EU 229 1035 44 + . . C24440 WUBlastX DNA_Kolobok-IS4 454 1035 69 + . . C24440 WUBlastX DNA_IS4EU 643 1035 88 + . . C24440 TRF Tandem_Repeat 1059 1089 62 + . . C24440 WUBlastX DNA_IS4EU 1178 1303 22 + . . C24456 WUBlastX DNA_Zator 2 1183 553 + . . C24456 WUBlastX DNA_Zator 1250 1744 69 + . . C24456 WUBlastX DNA_Zator 1358 1750 96 + . . C24464 WUBlastX LINE_RTE-X 42 2741 905 + . . C2451 WUBlastX LTR_DIRS 3 101 64 - . . C24514 WUBlastX LTR_Gypsy 1 774 454 + . . C24520 WUBlastX LINE_Penelope 2 1402 516 + . . C24520 WUBlastX LINE_Penelope 1747 1878 56 + . . C24520 WUBlastX LINE_Penelope 1920 2315 161 + . . C24556 GLEAN mRNA 51 1955 1 - . ID=CGI_10000198; C24556 GLEAN promoter 1956 2797 1 - . ID=CGI_10000198; C24566 TRF Tandem_Repeat 437 499 92 + . . C24566 TRF Tandem_Repeat 438 499 85 + . . C24566 WUBlastX LINE_L2 676 798 24 + . . C24566 WUBlastX LINE_Tad1? 715 768 25 + . . C24566 WUBlastX LINE_Proto2 1118 1648 106 + . . C24566 WUBlastX LINE_RTE-X 1202 2584 629 + . . C24582 WUBlastX LINE_L1-Tx1 3 461 49 - . . C24582 WUBlastX LINE_L1-Tx1 78 542 95 - . . C24582 WUBlastX LINE_L1 258 608 34 - . . C24582 WUBlastX LINE_L1-Tx1 1098 1277 33 + . . C24582 WUBlastX LINE_L1-Tx1 1131 1268 37 + . . C24582 WUBlastX LINE_L1 1295 1606 82 + . . C24582 WUBlastX LINE_L1-Tx1 1491 1772 59 + . . C24590 GLEAN mRNA 206 2810 1 - . ID=CGI_10000199; C24590 GLEAN promoter 2811 2812 1 - . ID=CGI_10000199; C24596 WUBlastX LINE_Penelope 180 602 60 - . . C24596 WUBlastX LINE_Penelope 306 602 96 - . . C24604 WUBlastX DNA_MuDR 23 400 81 - . . C24604 WUBlastX DNA_MuDR 409 762 116 - . . C24604 GLEAN mRNA 771 2674 0.997918 - . ID=CGI_10000200; C24604 WUBlastX DNA_MuDR 792 989 42 - . . C24604 GLEAN promoter 2675 2821 0.997918 - . ID=CGI_10000200; C24608 GLEAN mRNA 371 998 1 - . ID=CGI_10000201; C24608 GLEAN promoter 999 1998 1 - . ID=CGI_10000201; C24608 WUBlastX DNA_En-Spm 1276 2823 1086 - . . C24640 WUBlastX LINE_Penelope 268 726 34 - . . C24640 WUBlastX LINE_Penelope 370 669 40 - . . C24640 WUBlastX LINE_Penelope 442 687 82 - . . C24640 WUBlastX LINE_Penelope 704 1147 88 - . . C24650 WUBlastX LINE_L1-Tx1 5 166 55 - . . C24650 TRF Tandem_Repeat 284 395 66 + . . C24650 TRF Tandem_Repeat 2352 2580 225 + . . C24650 TRF Tandem_Repeat 2426 2538 70 + . . C24650 TRF Tandem_Repeat 2426 2580 95 + . . C24682 GLEAN mRNA 257 1700 0.643461 - . ID=CGI_10000202; C24682 GLEAN promoter 1701 2700 0.643461 - . ID=CGI_10000202; C24718 GLEAN promoter 1 82 0.999372 + . ID=CGI_10000203; C24718 GLEAN promoter 1 646 0.999244 + . ID=CGI_10000204; C24718 GLEAN mRNA 83 313 0.999372 + . ID=CGI_10000203; C24718 GLEAN mRNA 647 886 0.999244 + . ID=CGI_10000204; C24718 GLEAN mRNA 2166 2351 0.997357 - . ID=CGI_10000205; C24718 GLEAN promoter 2352 2874 0.997357 - . ID=CGI_10000205; C24724 GLEAN mRNA 217 2266 1 - . ID=CGI_10000206; C24724 GLEAN promoter 2267 2877 1 - . ID=CGI_10000206; C24726 WUBlastX DNA_Sola 389 820 197 + . . C24726 WUBlastX DNA_Sola 392 901 64 + . . C24726 WUBlastX DNA_Sola 855 974 53 + . . C24726 WUBlastX DNA_Sola 982 1353 123 + . . C24734 GLEAN mRNA 126 2237 0.558407 - . ID=CGI_10000209; C24734 GLEAN promoter 2238 2882 0.558407 - . ID=CGI_10000209; C24748 GLEAN mRNA 456 2857 1 - . ID=CGI_10000210; C24748 GLEAN promoter 2858 2893 1 - . ID=CGI_10000210; C24750 GLEAN promoter 1 797 0.999998 + . ID=CGI_10000211; C24750 GLEAN mRNA 798 2691 0.999998 + . ID=CGI_10000211; C24762 GLEAN promoter 1 750 0.993128 + . ID=CGI_10000212; C24762 GLEAN mRNA 751 2570 0.993128 + . ID=CGI_10000212; C24814 WUBlastX LINE_L1 1 165 69 - . . C24814 WUBlastX LINE_L1-Tx1 1061 1258 61 - . . C24814 WUBlastX LINE_L1-Tx1 1166 1288 70 - . . C24814 TRF Tandem_Repeat 1422 1893 692 + . . C24818 GLEAN promoter 1 831 0.98762 + . ID=CGI_10000213; C24818 GLEAN mRNA 832 1612 0.98762 + . ID=CGI_10000213; C24820 GLEAN promoter 1 213 0.990756 + . ID=CGI_10000214; C24820 GLEAN mRNA 214 1652 0.990756 + . ID=CGI_10000214; C24828 TRF Tandem_Repeat 1618 1669 104 + . . C24828 TRF Tandem_Repeat 1817 2630 908 + . . C24828 WUBlastX LTR_Gypsy 2632 2922 123 - . . C24828 WUBlastX LTR_Gypsy 2677 2913 225 - . . C24868 GLEAN promoter 1 302 0.69447 + . ID=CGI_10000215; C24868 GLEAN mRNA 303 1511 0.69447 + . ID=CGI_10000215; C24900 WUBlastX DNA_Kolobok-IS4 590 847 96 - . . C24900 WUBlastX DNA_IS4EU 677 847 112 - . . C24900 WUBlastX DNA_Sola 1543 2091 32 + . . C24900 WUBlastX DNA_Sola 1852 2046 75 + . . C24900 WUBlastX DNA_Sola 1867 2091 63 + . . C24900 WUBlastX DNA_Sola 2171 2551 60 + . . C24900 WUBlastX DNA_Sola 2541 2948 63 + . . C24914 GLEAN mRNA 1434 2585 1 - . ID=CGI_10000216; C24914 GLEAN promoter 2586 2986 1 - . ID=CGI_10000216; C24934 GLEAN promoter 1 394 1 + . ID=CGI_10000217; C24934 GLEAN mRNA 395 2509 1 + . ID=CGI_10000217; C24942 WUBlastX LTR_Pao 7 405 420 + . . C24942 WUBlastX LTR_Ngaro 1331 1720 107 - . . C24942 WUBlastX LTR_Ngaro 1457 1723 184 - . . C24962 GLEAN promoter 1 97 0.999624 + . ID=CGI_10000219; C24962 GLEAN mRNA 98 2520 0.999624 + . ID=CGI_10000219; C24966 GLEAN mRNA 2020 2986 1 - . ID=CGI_10000220; C24966 GLEAN promoter 2987 3007 1 - . ID=CGI_10000220; C24994 WUBlastX LTR_Gypsy 3 1070 874 + . . C25002 GLEAN mRNA 1231 2703 0.693382 - . ID=CGI_10000222; C25002 GLEAN promoter 2704 3028 0.693382 - . ID=CGI_10000222; C25014 GLEAN mRNA 1842 2405 1 - . ID=CGI_10000224; C25014 GLEAN promoter 2406 3036 1 - . ID=CGI_10000224; C25038 WUBlastX LINE_Penelope 1761 1943 61 + . . C25038 WUBlastX LINE_Penelope 2077 2355 59 + . . C25050 TRF Tandem_Repeat 733 757 50 + . . C25050 WUBlastX DNA_hAT-Tip100 889 1860 89 - . . C25050 WUBlastX DNA_hAT-Tip100 1090 2448 611 - . . C25050 WUBlastX DNA_hAT-Tip100 2381 3055 290 - . . C25064 GLEAN promoter 1 177 1 + . ID=CGI_10000226; C25064 GLEAN mRNA 178 2522 1 + . ID=CGI_10000226; C25096 GLEAN mRNA 1653 2816 1 - . ID=CGI_10000228; C25096 GLEAN promoter 2817 3085 1 - . ID=CGI_10000228; C25108 GLEAN promoter 1 171 0.999375 + . ID=CGI_10000229; C25108 GLEAN mRNA 172 1821 0.999375 + . ID=CGI_10000229; C25116 WUBlastX LTR_Ngaro 1 528 311 + . . C25116 WUBlastX LTR_Ngaro 435 791 35 + . . C25116 WUBlastX LTR_Ngaro 790 1386 188 + . . C25118 WUBlastX LINE_L2 51 164 33 + . . C25118 TRF Tandem_Repeat 1683 1948 291 + . . C25118 TRF Tandem_Repeat 1683 1948 385 + . . C25118 TRF Tandem_Repeat 1972 2272 431 + . . C25118 TRF Tandem_Repeat 1972 2269 182 + . . C25124 GLEAN promoter 1 2 0.624252 + . ID=CGI_10000231; C25124 GLEAN mRNA 3 467 0.624252 + . ID=CGI_10000231; C25140 GLEAN mRNA 780 2963 1 - . ID=CGI_10000232; C25140 GLEAN promoter 2964 3110 1 - . ID=CGI_10000232; C25176 WUBlastX LINE_RTE-X 1148 1666 152 - . . C25176 WUBlastX LINE_RTE-X 1259 1783 141 - . . C25178 WUBlastX LTR_Ngaro 1 255 197 + . . C25178 WUBlastX LTR_Ngaro 573 1286 309 + . . C25178 WUBlastX LTR_Ngaro 795 1217 318 + . . C25178 WUBlastX LTR_Ngaro 1223 1474 132 + . . C25178 WUBlastX LTR_Ngaro 1540 1863 76 + . . C25228 GLEAN promoter 1 783 1 + . ID=CGI_10000235; C25228 GLEAN mRNA 784 2757 1 + . ID=CGI_10000235; C25274 WUBlastX LTR_Gypsy 3 1475 1047 + . . C25274 TRF Tandem_Repeat 1890 2064 223 + . . C25290 GLEAN promoter 1 645 0.481188 + . ID=CGI_10000236; C25290 GLEAN mRNA 646 1332 0.481188 + . ID=CGI_10000236; C25290 TRF Tandem_Repeat 1655 1681 54 + . . C25290 WUBlastX LINE_RTE-X 1965 3191 69 - . . C25290 WUBlastX LINE_RTE-X 2292 3185 128 - . . C25310 GLEAN promoter 1 51 0.999372 + . ID=CGI_10000238; C25310 GLEAN mRNA 52 282 0.999372 + . ID=CGI_10000238; C25310 GLEAN mRNA 2134 2319 0.997359 - . ID=CGI_10000239; C25310 GLEAN promoter 2320 3216 0.997359 - . ID=CGI_10000239; C25314 GLEAN promoter 1167 2166 1 + . ID=CGI_10000240; C25314 GLEAN mRNA 2167 2544 1 + . ID=CGI_10000240; C25328 WUBlastX LINE_L2 1 117 94 - . . C25328 WUBlastX LINE_CR1 1 231 62 - . . C25328 WUBlastX LINE_L2 798 1007 69 - . . C25328 WUBlastX LINE_CR1-L2 852 1082 141 - . . C25328 WUBlastX LINE_L2 991 1740 183 - . . C25328 WUBlastX LINE_CR1-L2 997 1476 221 - . . C25328 WUBlastX LINE_CR1 1015 1407 225 - . . C25328 WUBlastX LINE_CR1-L2 1728 1916 86 - . . C25336 WUBlastX DNA_Harbinger 12 149 35 - . . C25336 WUBlastX DNA_Harbinger 261 1007 69 - . . C25336 WUBlastX DNA_Harbinger 264 380 101 - . . C25336 WUBlastX DNA_Harbinger 588 998 131 - . . C25344 WUBlastX LTR_Copia 12 572 91 - . . C25344 WUBlastX LTR_Copia 559 912 156 - . . C25346 WUBlastX DNA_Harbinger 2741 2914 73 + . . C25346 WUBlastX DNA_Harbinger 2777 2914 115 + . . C25346 TRF Tandem_Repeat 3211 3244 68 + . . C25366 WUBlastX LTR_Ngaro 906 1283 176 - . . C25378 WUBlastX LINE_RTE-X 243 488 95 - . . C25384 GLEAN mRNA 1592 3165 1 - . ID=CGI_10000241; C25384 GLEAN promoter 3166 3259 1 - . ID=CGI_10000241; C25392 WUBlastX DNA_Sola 92 793 186 - . . C25392 WUBlastX DNA_Sola 95 664 283 - . . C25392 WUBlastX DNA_Sola 787 894 49 - . . C25392 WUBlastX DNA_Sola 888 1070 98 - . . C25404 WUBlastX DNA_IS4EU 27 1079 100 - . . C25404 WUBlastX DNA_IS4EU 33 422 136 - . . C25404 WUBlastX DNA_IS4EU 597 1100 196 - . . C25420 GLEAN promoter 1 636 1 + . ID=CGI_10000242; C25420 GLEAN mRNA 637 3107 1 + . ID=CGI_10000242; C25466 TRF Tandem_Repeat 14 177 122 + . . C25466 TRF Tandem_Repeat 41 202 132 + . . C25466 WUBlastX LTR_DIRS 364 1008 268 + . . C25466 WUBlastX LTR_DIRS 1007 1303 201 + . . C25486 WUBlastX LTR_Gypsy 6 221 54 - . . C25486 WUBlastX LTR_Gypsy 45 551 319 - . . C25486 WUBlastX LTR_Gypsy 412 1269 425 - . . C25486 WUBlastX LTR_Gypsy 544 2106 383 - . . C25486 WUBlastX LTR_Gypsy 565 1266 484 - . . C25486 WUBlastX LTR_Gypsy 1712 2242 133 - . . C25486 WUBlastX LTR_Gypsy 2181 2315 22 - . . C25486 WUBlastX LTR_Gypsy 2701 2775 20 - . . C25486 WUBlastX LTR_Gypsy 2719 2775 21 - . . C25486 WUBlastX LTR_Gypsy 3050 3100 20 - . . C25496 WUBlastX LINE_CR1 353 1033 105 + . . C25496 GLEAN promoter 853 1852 0.998748 + . ID=CGI_10000243; C25496 WUBlastX LINE_L1 1457 1753 124 + . . C25496 GLEAN mRNA 1853 2074 0.998748 + . ID=CGI_10000243; C25496 WUBlastX LINE_CR1 2006 2536 27 + . . C25496 WUBlastX LINE_RTE-X 2093 3190 228 + . . C25504 GLEAN mRNA 2037 3217 0.999994 - . ID=CGI_10000244; C25504 GLEAN promoter 3218 3317 0.999994 - . ID=CGI_10000244; C2553 WUBlastX LTR_Pao 5 106 65 + . . C25544 GLEAN mRNA 3146 3304 1 - . ID=CGI_10000245; C25544 GLEAN promoter 3305 3338 1 - . ID=CGI_10000245; C25546 GLEAN promoter 425 1424 1 + . ID=CGI_10000246; C25546 GLEAN mRNA 1425 3329 1 + . ID=CGI_10000246; C25564 GLEAN promoter 713 1712 0.999411 + . ID=CGI_10000248; C25564 GLEAN mRNA 1713 2921 0.999411 + . ID=CGI_10000248; C25572 GLEAN mRNA 1625 2196 0.999994 - . ID=CGI_10000249; C25572 GLEAN promoter 2197 3196 0.999994 - . ID=CGI_10000249; C25588 GLEAN mRNA 1376 1762 0.999999 - . ID=CGI_10000256; C25588 GLEAN promoter 1763 2762 0.999999 - . ID=CGI_10000256; C25588 GLEAN mRNA 1913 2110 0.99937 - . ID=CGI_10000257; C25588 GLEAN promoter 2111 3110 0.99937 - . ID=CGI_10000257; C25596 WUBlastX LINE_CR1-L2 2422 3222 232 + . . C25596 WUBlastX LINE_CR1-L2 2704 3159 240 + . . C25596 WUBlastX LINE_CR1-L2 3165 3248 22 + . . C25596 WUBlastX LINE_CR1-L2 3165 3293 21 + . . C25612 WUBlastX LTR_Gypsy 1674 2579 182 + . . C25612 WUBlastX LTR_Gypsy 2594 2776 46 + . . C25612 WUBlastX LTR_Gypsy-Cigr 2669 2812 70 + . . C25612 WUBlastX LTR_Gypsy 2672 2791 92 + . . C25616 WUBlastX DNA_Maverick 2 313 82 + . . C25616 WUBlastX DNA_Maverick 315 674 55 + . . C25616 TRF Tandem_Repeat 3328 3373 92 + . . C25642 WUBlastX DNA_Kolobok-IS4 986 1381 127 - . . C25642 WUBlastX DNA_IS4EU 1049 1381 177 - . . C25644 GLEAN promoter 1 28 1 + . ID=CGI_10000258; C25644 GLEAN mRNA 29 2977 1 + . ID=CGI_10000258; C25652 WUBlastX LTR_Gypsy 219 1034 568 + . . C25652 WUBlastX LTR_Gypsy 237 1313 545 + . . C25652 WUBlastX LTR_Gypsy 2197 3093 437 + . . C25652 WUBlastX LTR_Gypsy 2368 3072 645 + . . C25652 WUBlastX LTR_Gypsy 3047 3262 185 + . . C25652 WUBlastX LTR_Gypsy 3237 3395 99 + . . C25676 GLEAN mRNA 522 725 0.999372 - . ID=CGI_10000260; C25676 GLEAN promoter 726 1725 0.999372 - . ID=CGI_10000260; C25678 WUBlastX LINE_L1-Tx1 1247 1825 125 - . . C25678 TRF Tandem_Repeat 2063 2530 255 + . . C25678 TRF Tandem_Repeat 2064 2530 328 + . . C25678 TRF Tandem_Repeat 2064 2870 436 + . . C25678 TRF Tandem_Repeat 2554 2870 92 + . . C25748 WUBlastX LTR_DIRS 1178 1945 244 + . . C25748 WUBlastX LTR_DIRS 1829 2029 46 + . . C25748 WUBlastX LTR_DIRS 2282 2452 62 + . . C25748 WUBlastX LTR_DIRS 2520 2843 127 + . . C25748 WUBlastX LTR_DIRS 2939 3250 125 + . . C25748 WUBlastX LTR_DIRS 3246 3362 36 + . . C25748 WUBlastX LTR_DIRS 3340 3459 56 + . . C25750 GLEAN mRNA 943 2941 0.999941 - . ID=CGI_10000264; C25750 GLEAN promoter 2942 3462 0.999941 - . ID=CGI_10000264; C25762 WUBlastX LTR_Gypsy-Cigr 2636 3472 683 - . . C25792 WUBlastX LTR_Ngaro 2023 2802 177 + . . C25792 WUBlastX LTR_Ngaro 2266 3039 112 + . . C25792 WUBlastX LTR_Ngaro 2401 2802 244 + . . C25792 WUBlastX LTR_Ngaro 2401 2892 220 + . . C25792 WUBlastX LTR_Ngaro 3053 3496 257 + . . C25804 WUBlastX LINE_RTE-X 1264 1731 78 + . . C25804 WUBlastX LINE_RTE-X 1348 1629 95 + . . C25804 WUBlastX LINE_RTE-X 1426 1629 124 + . . C25804 WUBlastX LINE_RTE-X 1429 1707 112 + . . C25818 GLEAN mRNA 140 3475 1 - . ID=CGI_10000265; C25818 GLEAN promoter 3476 3509 1 - . ID=CGI_10000265; C25822 GLEAN mRNA 638 3438 0.999826 - . ID=CGI_10000266; C25822 GLEAN promoter 3439 3515 0.999826 - . ID=CGI_10000266; C25826 GLEAN promoter 1 5 1 + . ID=CGI_10000267; C25826 GLEAN mRNA 6 3252 1 + . ID=CGI_10000267; C25828 WUBlastX DNA_Zator 2264 2365 21 - . . C25828 WUBlastX DNA_Zator 2404 2520 29 - . . C25832 WUBlastX RC_Helitron 3 1037 462 + . . C25832 WUBlastX LINE_L2 321 1304 21 + . . C25832 WUBlastX LINE_L2 1275 1382 20 + . . C25838 GLEAN promoter 1 54 1 + . ID=CGI_10000268; C25838 GLEAN mRNA 55 2901 1 + . ID=CGI_10000268; C25866 WUBlastX DNA_IS4EU 3258 3470 65 + . . C25876 WUBlastX LTR_Ngaro 531 1721 777 + . . C25876 WUBlastX LTR_Ngaro 2408 3127 243 + . . C25876 WUBlastX LTR_Ngaro 2699 3289 89 + . . C25900 GLEAN promoter 1 420 0.814164 + . ID=CGI_10000269; C25900 GLEAN mRNA 421 955 0.814164 + . ID=CGI_10000269; C25912 GLEAN promoter 153 1152 1 + . ID=CGI_10000271; C25912 GLEAN mRNA 1153 2268 1 + . ID=CGI_10000271; C25932 GLEAN mRNA 1210 3488 0.999949 - . ID=CGI_10000273; C25932 GLEAN promoter 3489 3608 0.999949 - . ID=CGI_10000273; C25946 GLEAN mRNA 1503 3085 0.999938 - . ID=CGI_10000275; C25946 GLEAN promoter 3086 3614 0.999938 - . ID=CGI_10000275; C25954 GLEAN mRNA 31 264 0.579663 - . ID=CGI_10000276; C25954 GLEAN promoter 265 1264 0.579663 - . ID=CGI_10000276; C25972 GLEAN promoter 811 1810 0.999821 + . ID=CGI_10000280; C25972 GLEAN mRNA 1811 3358 0.999821 + . ID=CGI_10000280; C26004 WUBlastX DNA_TcMar-Tc1 139 1140 258 + . . C26016 WUBlastX LINE_RTE-BovB 707 910 37 + . . C26018 WUBlastX LINE_RTE-X 104 703 135 - . . C26018 WUBlastX LINE_RTE-X 263 1540 872 - . . C26018 WUBlastX LINE_RTE-BovB 854 1669 142 - . . C26018 WUBlastX LINE_CR1 1816 1959 29 - . . C26018 WUBlastX LINE_L1 1845 2414 48 - . . C26018 WUBlastX LINE_RTE-X 1935 3653 957 - . . C26040 WUBlastX LINE_RTE-X 1896 2150 26 - . . C26040 WUBlastX LINE_RTE-X 1971 2150 35 - . . C26040 WUBlastX LINE_RTE-X 2010 2591 104 - . . C26040 WUBlastX LINE_RTE-X 2134 3090 214 - . . C26040 WUBlastX LINE_RTE-X 2629 3354 164 - . . C26054 TRF Tandem_Repeat 419 489 142 + . . C26054 WUBlastX DNA_PiggyBac 1012 1581 195 - . . C26054 WUBlastX DNA_PiggyBac 1015 1425 212 - . . C26070 WUBlastX LINE_RTE-X 112 447 51 + . . C26070 WUBlastX LINE_RTE-X 127 534 41 + . . C26070 WUBlastX LINE_RTE-X 169 420 67 + . . C26078 GLEAN mRNA 2046 3649 1 - . ID=CGI_10000283; C26078 GLEAN promoter 3650 3702 1 - . ID=CGI_10000283; C26094 WUBlastX DNA_hAT-hATw 2 604 487 - . . C26094 WUBlastX DNA_hAT-hATw 582 872 156 - . . C26102 GLEAN promoter 1 258 1 + . ID=CGI_10000284; C26102 GLEAN mRNA 259 3556 1 + . ID=CGI_10000284; C26108 TRF Tandem_Repeat 71 304 174 + . . C26108 TRF Tandem_Repeat 76 305 232 + . . C26108 TRF Tandem_Repeat 1169 1508 325 + . . C26108 TRF Tandem_Repeat 1172 1377 240 + . . C26108 TRF Tandem_Repeat 1172 1508 360 + . . C26108 TRF Tandem_Repeat 1390 1508 136 + . . C26108 WUBlastX LINE_L2 2191 2682 91 + . . C26108 WUBlastX LINE_L2 2293 2700 125 + . . C26108 WUBlastX LINE_CR1-L2 2398 2700 130 + . . C26108 WUBlastX LINE_L2 2627 2950 47 + . . C26108 WUBlastX LINE_L1 2726 2917 77 + . . C26128 WUBlastX LINE_R2 694 1368 291 - . . C26128 WUBlastX LINE_R2 1316 1708 244 - . . C26134 GLEAN mRNA 1667 3659 0.999999 - . ID=CGI_10000286; C26134 GLEAN promoter 3660 3741 0.999999 - . ID=CGI_10000286; C26168 WUBlastX LINE_L1 102 1124 435 + . . C26168 WUBlastX LINE_L1-Tx1 1144 3753 1357 + . . C26170 GLEAN mRNA 3054 3254 0.618186 - . ID=CGI_10000287; C26170 GLEAN promoter 3255 3767 0.618186 - . ID=CGI_10000287; C26192 GLEAN promoter 1 162 0.990573 + . ID=CGI_10000289; C26192 GLEAN mRNA 163 3703 0.990573 + . ID=CGI_10000289; C26196 GLEAN mRNA 115 270 1 - . ID=CGI_10000290; C26196 GLEAN promoter 271 1270 1 - . ID=CGI_10000290; C26196 GLEAN mRNA 666 3401 1 - . ID=CGI_10000291; C26196 GLEAN promoter 3402 3786 1 - . ID=CGI_10000291; C26198 GLEAN promoter 1 358 0.993364 + . ID=CGI_10000292; C26198 GLEAN mRNA 359 2894 0.993364 + . ID=CGI_10000292; C26206 WUBlastX LTR_Gypsy 28 324 136 - . . C26206 WUBlastX LTR_Gypsy 28 249 152 - . . C26206 WUBlastX LTR_Gypsy 480 1322 138 - . . C26206 WUBlastX LTR_Gypsy 747 1289 156 - . . C26212 GLEAN mRNA 1970 3694 1 - . ID=CGI_10000293; C26212 GLEAN promoter 3695 3795 1 - . ID=CGI_10000293; C26226 GLEAN mRNA 3097 3720 1 - . ID=CGI_10000294; C26226 GLEAN promoter 3721 3800 1 - . ID=CGI_10000294; C26230 WUBlastX LINE_RTE-BovB 12 503 64 - . . C26236 WUBlastX LINE_L2 814 1488 124 - . . C26236 WUBlastX LINE_CR1-L2 868 1425 159 - . . C26236 WUBlastX LINE_L1 889 1608 45 - . . C26240 WUBlastX LINE_L1-Tx1 6 986 665 - . . C26240 WUBlastX LINE_L1-Tx1 18 1178 230 - . . C26240 WUBlastX LINE_Jockey 1726 1806 21 - . . C26240 TRF Tandem_Repeat 2771 3451 964 + . . C26240 TRF Tandem_Repeat 3621 3674 83 + . . C26244 WUBlastX LTR_Gypsy 586 1047 32 - . . C26244 WUBlastX LTR_Gypsy 988 1239 21 - . . C26244 TRF Tandem_Repeat 2174 2227 99 + . . C26244 TRF Tandem_Repeat 3667 3698 64 + . . C26292 GLEAN promoter 1 319 0.908913 + . ID=CGI_10000295; C26292 GLEAN mRNA 320 3324 0.908913 + . ID=CGI_10000295; C26314 WUBlastX DNA_Harbinger 945 1268 315 - . . C26318 WUBlastX LINE_RTE-X 5 1540 564 + . . C26318 GLEAN mRNA 1815 3806 0.863777 - . ID=CGI_10000296; C26318 GLEAN promoter 3807 3853 0.863777 - . ID=CGI_10000296; C26320 WUBlastX LTR_Copia 172 648 34 + . . C26320 WUBlastX LTR_ERV1 412 651 36 + . . C26320 WUBlastX LTR_ERV1 511 696 34 + . . C26320 GLEAN promoter 1740 2739 0.481188 + . ID=CGI_10000297; C26320 WUBlastX LINE_L2 2710 2964 75 + . . C26320 GLEAN mRNA 2740 3018 0.481188 + . ID=CGI_10000297; C26338 WUBlastX LINE_L2 2775 3152 25 + . . C26338 WUBlastX LINE_L2 2871 3218 42 + . . C26338 WUBlastX LINE_L2 2880 3149 61 + . . C26342 GLEAN mRNA 1026 1265 0.618186 - . ID=CGI_10000298; C26342 GLEAN promoter 1266 2265 0.618186 - . ID=CGI_10000298; C26344 WUBlastX LINE_Penelope 1252 2121 458 + . . C26352 GLEAN promoter 1518 2517 0.995723 + . ID=CGI_10000299; C26352 GLEAN mRNA 2518 3580 0.995723 + . ID=CGI_10000299; C26364 GLEAN mRNA 173 2398 0.586574 - . ID=CGI_10000300; C26364 GLEAN promoter 2399 3398 0.586574 - . ID=CGI_10000300; C26370 WUBlastX LINE_L2 1468 1626 21 - . . C26370 WUBlastX LINE_CR1-L2 1830 2261 116 - . . C26370 WUBlastX LINE_L2 1833 2339 55 - . . C26394 WUBlastX LINE_L1-Tx1 3444 3875 94 - . . C26394 WUBlastX LINE_L1-Tx1 3570 3878 96 - . . C26394 WUBlastX LINE_L1 3636 3899 101 - . . C26402 WUBlastX LINE_L1-Tx1 3054 3242 29 + . . C26402 WUBlastX LINE_L1-Tx1 3090 3269 47 + . . C26402 WUBlastX LINE_L1 3132 3269 53 + . . C26402 WUBlastX LINE_L1 3162 3269 57 + . . C26402 WUBlastX LINE_L1-Tx1 3260 3433 84 + . . C26402 WUBlastX LINE_L1-Tx1 3313 3729 126 + . . C26402 WUBlastX LINE_L1 3475 3726 137 + . . C26402 WUBlastX LINE_L1 3478 3867 84 + . . C26422 GLEAN promoter 1 574 0.531613 + . ID=CGI_10000301; C26422 GLEAN mRNA 575 2236 0.531613 + . ID=CGI_10000301; C26430 WUBlastX LTR_Gypsy 619 978 110 + . . C26430 WUBlastX LTR_Gypsy 676 975 138 + . . C26430 WUBlastX LTR_Gypsy 724 1086 204 + . . C26430 WUBlastX LTR_Gypsy 994 1239 112 + . . C26448 GLEAN promoter 1 676 0.999993 + . ID=CGI_10000302; C26448 GLEAN mRNA 677 1674 0.999993 + . ID=CGI_10000302; C26448 WUBlastX DNA_Kolobok 1685 2428 189 + . . C26448 WUBlastX DNA_Kolobok 2556 2855 47 - . . C26458 GLEAN mRNA 398 1121 1 - . ID=CGI_10000303; C26458 GLEAN promoter 1122 2121 1 - . ID=CGI_10000303; C26460 WUBlastX LTR_Ngaro 1754 2173 167 + . . C26460 WUBlastX LTR_Ngaro 1808 2302 37 + . . C26460 WUBlastX LTR_Ngaro 2316 2459 47 + . . C26460 WUBlastX LTR_Ngaro 2471 2980 277 + . . C26460 WUBlastX LTR_Ngaro 2973 3062 51 + . . C26460 WUBlastX LTR_Ngaro 3029 3700 259 + . . C26466 GLEAN mRNA 325 1186 1 - . ID=CGI_10000304; C26466 GLEAN promoter 1187 2186 1 - . ID=CGI_10000304; C26472 GLEAN mRNA 44 535 0.999372 - . ID=CGI_10000305; C26472 WUBlastX LTR_Pao 173 730 39 - . . C26472 WUBlastX LTR_Gypsy 359 850 48 - . . C26472 GLEAN promoter 536 1535 0.999372 - . ID=CGI_10000305; C26472 TRF Tandem_Repeat 1819 1843 50 + . . C26474 GLEAN promoter 1 48 0.999372 + . ID=CGI_10000306; C26474 GLEAN mRNA 49 483 0.999372 + . ID=CGI_10000306; C26486 WUBlastX LINE_Penelope 214 1056 280 - . . C26486 WUBlastX LINE_Penelope 1076 1426 147 - . . C26486 TRF Tandem_Repeat 1691 1725 70 + . . C26486 TRF Tandem_Repeat 3180 3233 81 + . . C26486 WUBlastX LINE_Penelope 3286 3663 49 - . . C26486 WUBlastX LINE_Penelope 3415 3678 50 - . . C26486 WUBlastX LINE_Penelope 3499 3807 86 - . . C26500 GLEAN mRNA 660 3254 1 - . ID=CGI_10000307; C26500 GLEAN promoter 3255 3986 1 - . ID=CGI_10000307; C26508 GLEAN promoter 1 695 0.999978 + . ID=CGI_10000308; C26508 GLEAN mRNA 696 2000 0.999978 + . ID=CGI_10000308; C26516 GLEAN mRNA 1572 3983 0.998995 - . ID=CGI_10000310; C26516 GLEAN promoter 3984 4003 0.998995 - . ID=CGI_10000310; C26518 WUBlastX DNA_Harbinger 3265 3513 207 + . . C26518 WUBlastX DNA_Harbinger 3316 3564 77 + . . C26518 WUBlastX DNA_Harbinger 3805 3858 36 + . . C26522 GLEAN promoter 1 112 0.480927 + . ID=CGI_10000311; C26522 GLEAN mRNA 113 3849 0.480927 + . ID=CGI_10000311; C26532 WUBlastX LINE_RTE-BovB 377 745 30 - . . C26532 GLEAN mRNA 1020 3319 1 - . ID=CGI_10000313; C26532 GLEAN promoter 3320 4014 1 - . ID=CGI_10000313; C26534 WUBlastX LTR_DIRS 9 641 183 - . . C26534 GLEAN mRNA 2594 2965 0.481188 - . ID=CGI_10000312; C26534 GLEAN promoter 2966 3965 0.481188 - . ID=CGI_10000312; C26534 WUBlastX DNA_PiggyBac 3441 3992 215 - . . C26550 WUBlastX LTR_Ngaro 1699 1932 66 - . . C26550 WUBlastX LTR_Ngaro 1735 1956 142 - . . C26550 WUBlastX LTR_Ngaro 1950 2477 145 - . . C26550 WUBlastX LTR_Ngaro 2688 3740 756 - . . C26556 GLEAN mRNA 1391 3953 0.998023 - . ID=CGI_10000314; C26556 GLEAN promoter 3954 4031 0.998023 - . ID=CGI_10000314; C26566 WUBlastX DNA_Kolobok-IS4 2969 3202 62 + . . C26566 WUBlastX DNA_P 3035 3298 93 + . . C26566 WUBlastX DNA_P 3044 3367 42 + . . C26578 GLEAN mRNA 516 3878 1 - . ID=CGI_10000316; C26578 GLEAN promoter 3879 4049 1 - . ID=CGI_10000316; C26584 GLEAN promoter 1 103 0.999372 + . ID=CGI_10000317; C26584 GLEAN mRNA 104 2020 0.999372 + . ID=CGI_10000317; C26584 WUBlastX LINE_L1 3589 4011 22 + . . C26584 WUBlastX LINE_L1-Tx1 3712 3993 28 + . . C26584 WUBlastX LINE_L1 3781 4041 35 + . . C26584 WUBlastX LINE_L1-Tx1 3790 3993 75 + . . C26606 WUBlastX DNA_Harbinger 1111 1926 345 - . . C26612 TRF Tandem_Repeat 1262 1297 72 + . . C26612 TRF Tandem_Repeat 1330 1371 66 + . . C26612 WUBlastX DNA_Merlin 1818 1865 22 + . . C26612 WUBlastX DNA_Merlin 1883 2239 66 + . . C26612 WUBlastX DNA_Merlin 1952 2611 382 + . . C26620 WUBlastX DNA_PiggyBac 321 677 32 - . . C26620 WUBlastX DNA_PiggyBac 399 695 64 - . . C26620 WUBlastX DNA_PiggyBac 465 683 87 - . . C26620 WUBlastX DNA_PiggyBac 471 791 47 - . . C26620 WUBlastX DNA_PiggyBac 820 933 26 - . . C26620 WUBlastX DNA_PiggyBac 1132 1275 33 - . . C26620 WUBlastX DNA_PiggyBac 1156 1272 38 - . . C26620 WUBlastX DNA_PiggyBac 1174 1287 80 - . . C26620 WUBlastX DNA_PiggyBac 1177 1314 52 - . . C26620 WUBlastX DNA_PiggyBac 1432 1548 45 - . . C26620 WUBlastX DNA_PiggyBac 2028 2207 30 - . . C26620 WUBlastX DNA_PiggyBac 2061 2207 39 - . . C26620 WUBlastX DNA_PiggyBac 2097 2204 62 - . . C26620 WUBlastX DNA_PiggyBac 2233 2322 21 - . . C26620 TRF Tandem_Repeat 3242 3268 54 + . . C26624 TRF Tandem_Repeat 677 702 52 + . . C26624 WUBlastX LINE_RTE-BovB 2054 2287 70 - . . C26624 WUBlastX LINE_L1-Tx1 2102 2323 154 - . . C26626 WUBlastX LTR_Pao 2354 2485 47 - . . C26626 WUBlastX LTR_Pao 2366 2560 22 - . . C26626 WUBlastX LTR_Pao 2554 3435 104 - . . C26626 WUBlastX LTR_Pao 2709 2957 177 - . . C26626 WUBlastX LTR_Pao 2736 3020 121 - . . C26626 WUBlastX LTR_Pao 3007 4071 449 - . . C26628 WUBlastX DNA_Harbinger 2656 2805 65 + . . C26654 WUBlastX RC_Helitron 33 389 79 - . . C26654 GLEAN mRNA 1176 1971 0.996819 - . ID=CGI_10000318; C26654 GLEAN promoter 1972 2971 0.996819 - . ID=CGI_10000318; C26654 TRF Tandem_Repeat 2642 2683 68 + . . C26654 TRF Tandem_Repeat 2643 2680 51 + . . C26674 WUBlastX LINE_L2-Hydra 1 693 119 + . . C26674 WUBlastX LINE_RTE-X 4 582 195 + . . C26674 GLEAN promoter 71 1070 0.99935 + . ID=CGI_10000320; C26674 GLEAN mRNA 1071 3276 0.99935 + . ID=CGI_10000320; C26674 TRF Tandem_Repeat 2430 2483 108 + . . C26674 TRF Tandem_Repeat 2860 2913 74 + . . C26684 GLEAN promoter 1 215 1 + . ID=CGI_10000321; C26684 GLEAN mRNA 216 3728 1 + . ID=CGI_10000321; C26692 WUBlastX DNA_Harbinger 238 633 239 - . . C26692 WUBlastX DNA_Harbinger 624 935 119 - . . C26712 GLEAN promoter 346 1345 0.999372 + . ID=CGI_10000323; C26712 GLEAN mRNA 1346 1549 0.999372 + . ID=CGI_10000323; C26726 WUBlastX DNA_TcMar-Tc1 185 469 31 + . . C26726 WUBlastX DNA_TcMar-Tc1 501 1235 351 + . . C26726 WUBlastX LTR_Pao 2325 2468 88 - . . C26726 WUBlastX LTR_Pao 2462 2512 35 - . . C26726 WUBlastX LTR_Pao 2548 2673 45 + . . C26726 WUBlastX LTR_Pao 2557 2649 57 + . . C26728 GLEAN promoter 2564 3563 0.997821 + . ID=CGI_10000324; C26728 GLEAN mRNA 3564 4112 0.997821 + . ID=CGI_10000324; C26738 GLEAN promoter 331 1330 1 + . ID=CGI_10000325; C26738 GLEAN mRNA 1331 2867 1 + . ID=CGI_10000325; C26742 GLEAN mRNA 916 1357 1 - . ID=CGI_10000326; C26742 GLEAN promoter 1358 2357 1 - . ID=CGI_10000326; C26746 GLEAN promoter 689 1688 1 + . ID=CGI_10000327; C26746 GLEAN mRNA 1689 2608 1 + . ID=CGI_10000327; C26762 GLEAN promoter 304 1303 0.972852 + . ID=CGI_10000328; C26762 GLEAN mRNA 1304 3556 0.972852 + . ID=CGI_10000328; C26812 WUBlastX LINE_L1-Tx1 2681 4192 411 - . . C26824 WUBlastX RC_Helitron 2419 4215 747 + . . C26852 GLEAN promoter 1 354 1 + . ID=CGI_10000330; C26852 GLEAN mRNA 355 3034 1 + . ID=CGI_10000330; C26860 GLEAN promoter 1 24 0.999372 + . ID=CGI_10000331; C26860 GLEAN mRNA 25 285 0.999372 + . ID=CGI_10000331; C26860 WUBlastX DNA_TcMar-Tc1 55 150 34 + . . C26860 WUBlastX DNA_TcMar-Tc1 180 311 27 + . . C26860 WUBlastX LTR_Gypsy-Cigr 378 1604 671 + . . C26860 WUBlastX DNA_TcMar-Tc1 2453 3034 317 + . . C26862 GLEAN mRNA 46 660 0.637591 - . ID=CGI_10000332; C26862 GLEAN promoter 661 1660 0.637591 - . ID=CGI_10000332; C26866 GLEAN promoter 1 307 1 + . ID=CGI_10000333; C26866 GLEAN mRNA 308 3211 1 + . ID=CGI_10000333; C26878 WUBlastX DNA_Harbinger 3100 3339 21 - . . C26878 WUBlastX DNA_Harbinger 3142 3621 286 - . . C26878 WUBlastX DNA_Harbinger 3142 4014 216 - . . C26900 GLEAN promoter 1 120 1 + . ID=CGI_10000335; C26900 GLEAN mRNA 121 739 1 + . ID=CGI_10000335; C26918 WUBlastX DNA_TcMar-Tc1 631 1017 61 - . . C26918 WUBlastX DNA_TcMar-Tc1 907 1104 28 - . . C26934 WUBlastX DNA_TcMar-Tc2 3769 4281 541 - . . C26936 GLEAN mRNA 652 3529 1 - . ID=CGI_10000336; C26936 WUBlastX LTR_Gypsy 1323 1346 20 - . . C26936 WUBlastX LTR_Gypsy 1484 2260 314 - . . C26936 WUBlastX LTR_Gypsy 1613 2275 350 - . . C26936 WUBlastX LTR_Gypsy 2202 3359 178 - . . C26936 WUBlastX LTR_Gypsy 2205 2915 412 - . . C26936 WUBlastX LTR_Gypsy 2271 3059 408 - . . C26936 WUBlastX LTR_Gypsy-Gmr1 2271 2831 413 - . . C26936 GLEAN promoter 3530 4287 1 - . ID=CGI_10000336; C26948 GLEAN mRNA 3060 3281 0.999372 - . ID=CGI_10000337; C26948 GLEAN promoter 3282 4281 0.999372 - . ID=CGI_10000337; C26950 WUBlastX LINE_L2 2299 2799 128 + . . C26950 WUBlastX LINE_CR1-L2 2824 3015 24 + . . C26950 WUBlastX LINE_CR1-L2 2929 3015 25 + . . C26966 WUBlastX LTR_DIRS 262 918 280 + . . C26966 WUBlastX LTR_Gypsy 784 981 26 + . . C26966 WUBlastX LTR_DIRS 964 2904 1275 + . . C26966 WUBlastX LTR_DIRS 2971 3978 738 + . . C27016 GLEAN promoter 176 1175 1 + . ID=CGI_10000338; C27016 GLEAN mRNA 1176 2429 1 + . ID=CGI_10000338; C27020 GLEAN mRNA 1314 2519 0.69447 - . ID=CGI_10000339; C27020 GLEAN promoter 2520 3519 0.69447 - . ID=CGI_10000339; C27020 WUBlastX LINE_CR1 4044 4343 87 + . . C27020 WUBlastX LINE_RTE-X 4155 4343 117 + . . C27020 WUBlastX LINE_RTE-X 4200 4343 152 + . . C27052 GLEAN mRNA 1421 2305 0.593389 - . ID=CGI_10000341; C27052 GLEAN promoter 2306 3305 0.593389 - . ID=CGI_10000341; C27058 WUBlastX LTR_DIRS 2185 3711 502 + . . C27058 WUBlastX LTR_DIRS 3717 3806 32 + . . C27058 WUBlastX LTR_DIRS 3729 3857 29 + . . C27058 WUBlastX LTR_DIRS 3830 4282 229 + . . C27086 WUBlastX DNA_TcMar-Marin 121 582 101 + . . C27086 WUBlastX DNA_TcMar-Marin 121 498 155 + . . C27086 WUBlastX DNA_TcMar-Marin 458 673 33 + . . C27086 WUBlastX DNA_TcMar-Marin 864 1244 183 + . . C27086 TRF Tandem_Repeat 3080 3793 1043 + . . C27092 WUBlastX LINE_CR1-L2 1788 2171 122 - . . C27092 WUBlastX LINE_L2 1788 2258 78 - . . C27092 WUBlastX LINE_RTE-X 3471 4010 189 - . . C27100 GLEAN promoter 1374 2373 0.994137 + . ID=CGI_10000343; C27100 WUBlastX DNA_IS4EU 2356 2553 61 + . . C27100 GLEAN mRNA 2374 3198 0.994137 + . ID=CGI_10000343; C27100 WUBlastX DNA_IS4EU 3681 4328 229 + . . C27106 WUBlastX LINE_RTE-X 737 1066 44 + . . C27106 WUBlastX LINE_RTE-X 803 1081 68 + . . C27106 WUBlastX LINE_RTE-X 815 958 82 + . . C27146 WUBlastX LTR_Copia 31 117 51 - . . C27146 WUBlastX LTR_Gypsy 862 1668 362 - . . C27146 WUBlastX LTR_Gypsy 1000 1665 420 - . . C27146 WUBlastX LTR_Gypsy 1659 2471 526 - . . C27146 WUBlastX LTR_Gypsy-Cigr 1659 3059 418 - . . C27146 WUBlastX LTR_Gypsy 3058 4068 553 - . . C27146 WUBlastX LTR_Gypsy 3451 4188 202 - . . C27154 GLEAN mRNA 738 2722 1 - . ID=CGI_10000347; C27154 GLEAN promoter 2723 3722 1 - . ID=CGI_10000347; C27158 GLEAN mRNA 2100 3868 0.999999 - . ID=CGI_10000348; C27158 GLEAN promoter 3869 4463 0.999999 - . ID=CGI_10000348; C27168 GLEAN mRNA 1630 4389 1 - . ID=CGI_10000349; C27168 GLEAN promoter 4390 4478 1 - . ID=CGI_10000349; C27178 GLEAN promoter 1 400 0.69447 + . ID=CGI_10000350; C27178 GLEAN mRNA 401 2071 0.69447 + . ID=CGI_10000350; C27230 TRF Tandem_Repeat 160 222 51 + . . C27230 WUBlastX DNA_Maverick 3333 4436 526 + . . C27304 TRF Tandem_Repeat 476 530 83 + . . C27304 WUBlastX DNA_Sola 3469 3741 39 + . . C27310 TRF Tandem_Repeat 2784 2908 55 + . . C27310 WUBlastX LINE_Penelope 3553 3966 34 + . . C27314 GLEAN mRNA 63 4461 0.999992 - . ID=CGI_10000355; C27314 GLEAN promoter 4462 4585 0.999992 - . ID=CGI_10000355; C27378 GLEAN promoter 1 170 0.999936 + . ID=CGI_10000356; C27378 GLEAN mRNA 171 4280 0.999936 + . ID=CGI_10000356; C27386 GLEAN promoter 214 1213 1 + . ID=CGI_10000357; C27386 GLEAN mRNA 1214 3658 1 + . ID=CGI_10000357; C27400 TRF Tandem_Repeat 2763 2814 86 + . . C27400 WUBlastX LINE_L1-Tx1 3287 4657 170 - . . C27410 GLEAN promoter 1 379 1 + . ID=CGI_10000358; C27410 GLEAN mRNA 380 4500 1 + . ID=CGI_10000358; C27412 WUBlastX LINE_CR1-L2 1454 3262 796 - . . C27412 WUBlastX LINE_CR1 3068 3310 103 - . . C27412 WUBlastX LINE_L2 3089 3352 36 - . . C27444 WUBlastX LTR_Gypsy 3 1562 1213 - . . C27444 WUBlastX LINE_RTE-X 1732 2601 258 - . . C27444 WUBlastX LINE_RTE-BovB 2236 2673 61 - . . C27444 WUBlastX LINE_RTE-RTE 3333 3434 24 - . . C27444 WUBlastX LINE_RTE-X 3360 3434 48 - . . C27444 WUBlastX LINE_RTE-X 3443 3496 23 - . . C27444 WUBlastX LINE_RTE-X 3493 4203 264 - . . C27456 WUBlastX LINE_RTE-X 3909 4190 30 - . . C27456 WUBlastX LINE_RTE-X 4265 4693 65 - . . C27508 GLEAN mRNA 4042 4671 0.965911 - . ID=CGI_10000361; C27508 GLEAN promoter 4672 4755 0.965911 - . ID=CGI_10000361; C27526 TRF Tandem_Repeat 2617 2672 112 + . . C27526 WUBlastX LINE_L1-Tx1 3314 3763 41 + . . C27526 WUBlastX LINE_L1-Tx1 3452 3799 73 + . . C27526 WUBlastX LINE_L1-Tx1 3500 3778 101 + . . C27526 WUBlastX LINE_L1-Tx1 3786 4772 89 + . . C27530 GLEAN mRNA 1369 3030 0.988982 - . ID=CGI_10000362; C27530 GLEAN promoter 3031 4030 0.988982 - . ID=CGI_10000362; C27538 WUBlastX LINE_L1-Tx1 3575 4780 71 - . . C27552 WUBlastX DNA_hAT-Tip100 305 586 103 + . . C27552 WUBlastX DNA_hAT-Tip100 365 1006 61 + . . C27552 WUBlastX DNA_hAT-Tip100 963 1127 70 + . . C27552 WUBlastX DNA_hAT-hATw 4094 4786 205 - . . C27570 WUBlastX DNA_Harbinger 930 1331 153 - . . C27570 GLEAN promoter 2418 3417 0.999064 + . ID=CGI_10000365; C27570 GLEAN mRNA 3418 3888 0.999064 + . ID=CGI_10000365; C27570 TRF Tandem_Repeat 3917 3983 89 + . . C27578 WUBlastX LINE_CR1-L2 5 412 149 - . . C27578 WUBlastX LINE_L2 26 598 24 - . . C27578 WUBlastX LINE_L2 542 688 21 - . . C27588 WUBlastX LINE_Penelope 75 179 51 - . . C27588 WUBlastX LINE_Penelope 194 355 51 - . . C27588 GLEAN mRNA 1665 1868 0.999372 - . ID=CGI_10000366; C27588 GLEAN promoter 1869 2868 0.999372 - . ID=CGI_10000366; C27630 GLEAN mRNA 1219 4804 1 - . ID=CGI_10000369; C27630 GLEAN promoter 4805 4853 1 - . ID=CGI_10000369; C27638 GLEAN mRNA 273 3544 0.542274 - . ID=CGI_10000372; C27638 GLEAN promoter 3545 4544 0.542274 - . ID=CGI_10000372; C27638 WUBlastX LTR_Gypsy 4475 4858 339 + . . C27640 GLEAN mRNA 3546 3806 0.999068 - . ID=CGI_10000373; C27640 GLEAN promoter 3807 4806 0.999068 - . ID=CGI_10000373; C27644 GLEAN mRNA 442 4717 0.999993 - . ID=CGI_10000374; C27644 GLEAN promoter 4718 4862 0.999993 - . ID=CGI_10000374; C27658 WUBlastX DNA_Kolobok-IS4 2344 2445 20 + . . C27658 WUBlastX DNA_Kolobok-IS4 2901 3035 42 + . . C27668 GLEAN mRNA 3682 4416 0.994137 - . ID=CGI_10000375; C27668 GLEAN promoter 4417 4869 0.994137 - . ID=CGI_10000375; C27680 WUBlastX DNA_IS 1815 4841 5072 + . . C27694 WUBlastX DNA_Maverick 2152 2481 137 - . . C27694 WUBlastX DNA_Maverick 2459 2566 46 - . . C27694 GLEAN mRNA 2532 3020 1 - . ID=CGI_10000376; C27694 WUBlastX DNA_Maverick 2556 2702 56 - . . C27694 WUBlastX DNA_Maverick 2574 2687 66 - . . C27694 WUBlastX DNA_Maverick 2694 3140 230 - . . C27694 WUBlastX DNA_Maverick 2709 3227 54 - . . C27694 GLEAN promoter 3021 4020 1 - . ID=CGI_10000376; C27694 WUBlastX RC_Helitron 4188 4889 100 - . . C27698 GLEAN mRNA 2055 3038 0.998623 - . ID=CGI_10000377; C27698 GLEAN promoter 3039 4038 0.998623 - . ID=CGI_10000377; C27698 GLEAN mRNA 3907 4737 0.999372 - . ID=CGI_10000378; C27698 GLEAN promoter 4738 4891 0.999372 - . ID=CGI_10000378; C27700 WUBlastX LTR_Gypsy 9 1907 710 - . . C27700 WUBlastX LTR_Gypsy-Cigr 12 1541 874 - . . C27700 WUBlastX LTR_Gypsy 1847 2137 20 - . . C27700 WUBlastX LTR_Gypsy 1907 2068 27 - . . C27700 WUBlastX LTR_Gypsy 2252 2341 25 - . . C27712 GLEAN promoter 772 1771 0.56134 + . ID=CGI_10000379; C27712 GLEAN mRNA 1772 3977 0.56134 + . ID=CGI_10000379; C27726 WUBlastX LTR_Ngaro 2731 2871 25 + . . C27726 WUBlastX LTR_Ngaro 3225 3302 34 + . . C27746 GLEAN mRNA 62 3133 0.998274 - . ID=CGI_10000381; C27746 GLEAN promoter 3134 4133 0.998274 - . ID=CGI_10000381; C27754 GLEAN mRNA 4441 4875 0.999372 - . ID=CGI_10000383; C27754 GLEAN promoter 4876 4923 0.999372 - . ID=CGI_10000383; C27762 GLEAN mRNA 34 4931 0.999952 - . ID=CGI_10000384; C27762 GLEAN promoter 4932 4931 0.999952 - . ID=CGI_10000384; C27792 WUBlastX LINE_RTE-X 1994 2209 63 - . . C27792 WUBlastX LINE_RTE-X 2021 2359 46 - . . C27792 WUBlastX DNA_Harbinger 4193 4441 40 + . . C27792 WUBlastX DNA_Harbinger 4220 4393 77 + . . C27812 WUBlastX LTR_DIRS? 966 1772 504 - . . C27812 WUBlastX LTR_Ngaro 987 1937 65 - . . C27812 WUBlastX LTR_Gypsy 2357 2446 29 - . . C27812 WUBlastX LTR_Gypsy 2376 2906 36 - . . C27812 WUBlastX LTR_DIRS 2460 4187 842 - . . C27812 WUBlastX LTR_DIRS 4100 4771 163 - . . C27816 GLEAN mRNA 1119 1472 0.618186 - . ID=CGI_10000388; C27816 GLEAN promoter 1473 2472 0.618186 - . ID=CGI_10000388; C27830 WUBlastX LINE_RTE-X 4249 4395 25 + . . C27830 WUBlastX LINE_RTE-X 4368 4997 32 + . . C27830 WUBlastX LINE_RTE-X 4395 4682 67 + . . C27830 WUBlastX LINE_RTE-X 4530 4775 36 + . . C27832 WUBlastX LINE_RTE-BovB 1612 2067 221 + . . C27832 WUBlastX LINE_RTE-BovB 1714 2064 228 + . . C27850 WUBlastX DNA_Kolobok-IS4 277 786 64 - . . C27874 GLEAN mRNA 595 3928 0.999676 - . ID=CGI_10000393; C27874 GLEAN promoter 3929 4928 0.999676 - . ID=CGI_10000393; C27882 TRF Tandem_Repeat 1142 1473 603 + . . C27882 WUBlastX LINE_RTE-X 2520 2813 41 - . . C27882 WUBlastX LINE_RTE-X 2625 2813 66 - . . C27882 WUBlastX LINE_RTE-X 2658 3395 41 - . . C27882 WUBlastX LINE_RTE-X 2667 2861 54 - . . C27882 WUBlastX LINE_RTE-X 3153 3395 52 - . . C27882 WUBlastX LINE_RTE-X 4904 5041 50 + . . C27882 WUBlastX LINE_RTE-X 4934 5050 72 + . . C27890 WUBlastX LTR_Gypsy 3207 3590 25 - . . C27890 WUBlastX LTR_Gypsy 3312 3581 26 - . . C27890 WUBlastX LTR_Gypsy 3390 3590 42 - . . C27890 WUBlastX LTR_Gypsy 3586 3747 51 - . . C27890 WUBlastX LTR_Gypsy 3801 3926 25 - . . C27890 WUBlastX LTR_Gypsy 3834 3926 58 - . . C27890 WUBlastX LTR_Gypsy 4536 4637 28 - . . C27984 GLEAN promoter 447 1446 0.999999 + . ID=CGI_10000395; C27984 GLEAN mRNA 1447 3221 0.999999 + . ID=CGI_10000395; C28002 WUBlastX DNA_Harbinger 743 877 41 + . . C28002 WUBlastX DNA_Harbinger 964 1812 272 + . . C28002 GLEAN mRNA 2201 2782 0.999372 - . ID=CGI_10000396; C28002 GLEAN promoter 2783 3782 0.999372 - . ID=CGI_10000396; C28006 WUBlastX LINE_L2 3031 3075 20 - . . C28006 WUBlastX LINE_CR1-L2 3216 3524 66 - . . C28006 WUBlastX LINE_CR1-L2 3297 3524 94 - . . C28006 WUBlastX LINE_CR1-L2 3392 3859 107 - . . C28006 WUBlastX LINE_CR1-L2 3497 3862 133 - . . C28006 WUBlastX LINE_L2 3566 3862 215 - . . C28006 WUBlastX LINE_CR1-L2 3826 3963 53 - . . C28006 WUBlastX LINE_CR1-L2 3829 4014 20 - . . C28006 WUBlastX LINE_CR1-L2 3993 4169 46 - . . C28006 WUBlastX LINE_CR1 3996 4211 32 - . . C28026 GLEAN mRNA 3189 3568 0.999049 - . ID=CGI_10000397; C28026 GLEAN promoter 3569 4568 0.999049 - . ID=CGI_10000397; C28026 GLEAN mRNA 3821 4081 0.744024 - . ID=CGI_10000398; C28026 GLEAN promoter 4082 5081 0.744024 - . ID=CGI_10000398; C28026 GLEAN mRNA 4247 4681 0.592042 - . ID=CGI_10000399; C28026 GLEAN promoter 4682 5185 0.592042 - . ID=CGI_10000399; C28030 WUBlastX DNA_Maverick 11 295 168 + . . C28030 WUBlastX LINE_L1-Tx1 309 554 42 + . . C28030 WUBlastX LINE_L1-Tx1 479 730 219 + . . C28030 WUBlastX LINE_L1 718 996 187 + . . C28030 WUBlastX LINE_L1 841 1026 65 + . . C28030 WUBlastX LINE_L1-Tx1 1259 1378 49 + . . C28030 WUBlastX LINE_L1-Tx1 1259 1489 44 + . . C28030 GLEAN mRNA 1799 2476 0.412771 - . ID=CGI_10000400; C28030 GLEAN promoter 2300 3299 0.69447 + . ID=CGI_10000401; C28030 GLEAN promoter 2477 3476 0.412771 - . ID=CGI_10000400; C28030 WUBlastX DNA_Maverick 2594 3163 382 - . . C28030 GLEAN mRNA 3300 4298 0.69447 + . ID=CGI_10000401; C28036 GLEAN mRNA 2192 2761 1 - . ID=CGI_10000402; C28036 GLEAN promoter 2762 3761 1 - . ID=CGI_10000402; C28044 WUBlastX LINE_Penelope 3618 5099 584 - . . C28064 GLEAN mRNA 32 648 0.999999 - . ID=CGI_10000403; C28064 GLEAN promoter 422 1421 1 + . ID=CGI_10000404; C28064 GLEAN promoter 649 1648 0.999999 - . ID=CGI_10000403; C28064 GLEAN mRNA 1422 2012 1 + . ID=CGI_10000404; C28064 WUBlastX LTR_Ngaro 4520 5227 88 + . . C28082 GLEAN promoter 1 679 0.999885 + . ID=CGI_10000405; C28082 GLEAN mRNA 680 4355 0.999885 + . ID=CGI_10000405; C28090 WUBlastX LINE_L2 514 1101 172 - . . C28090 WUBlastX LINE_L2 544 1260 100 - . . C28090 WUBlastX LINE_L1 670 1383 20 - . . C28090 TRF Tandem_Repeat 2956 2997 84 + . . C28108 WUBlastX LTR_Gypsy 2 283 111 + . . C28108 WUBlastX LTR_Gypsy 2 433 71 + . . C28108 WUBlastX LTR_Gypsy 2 517 63 + . . C28108 WUBlastX LTR_Gypsy 2 358 101 + . . C28108 WUBlastX DNA_TcMar-Pogo 3096 3872 258 - . . C28108 WUBlastX DNA_TcMar-Pogo 3842 4144 224 - . . C28108 WUBlastX DNA_TcMar-Tc2 3887 4192 63 - . . C28108 WUBlastX DNA_TcMar-Pogo 4205 4738 277 - . . C28152 GLEAN mRNA 2049 5144 0.997823 - . ID=CGI_10000406; C28152 GLEAN promoter 5145 5296 0.997823 - . ID=CGI_10000406; C28168 WUBlastX LTR_DIRS 4084 5034 457 - . . C28190 GLEAN mRNA 38 2555 1 - . ID=CGI_10000409; C28190 GLEAN promoter 2556 3555 1 - . ID=CGI_10000409; C2821 WUBlastX LTR_Gypsy 3 110 88 + . . C28218 WUBlastX LTR_Pao 8 1858 949 - . . C28218 TRF Tandem_Repeat 1942 2295 636 + . . C28218 WUBlastX LTR_Pao 2354 3055 64 - . . C28218 GLEAN mRNA 3900 4367 0.999999 - . ID=CGI_10000410; C28218 WUBlastX LTR_Pao 3906 5288 1273 - . . C28218 GLEAN promoter 4368 5367 0.999999 - . ID=CGI_10000410; C28218 WUBlastX LTR_Pao 5316 5369 36 - . . C28242 GLEAN promoter 1 230 0.999372 + . ID=CGI_10000411; C28242 GLEAN mRNA 231 719 0.999372 + . ID=CGI_10000411; C28258 GLEAN mRNA 493 750 0.999372 - . ID=CGI_10000412; C28258 GLEAN promoter 751 1750 0.999372 - . ID=CGI_10000412; C28258 GLEAN mRNA 778 1749 0.978042 - . ID=CGI_10000413; C28258 GLEAN promoter 1750 2749 0.978042 - . ID=CGI_10000413; C28258 GLEAN promoter 2417 3416 0.593325 + . ID=CGI_10000414; C28258 WUBlastX LINE_CR1 2581 2967 158 - . . C28258 WUBlastX LINE_L1-Tx1 3216 3584 49 + . . C28258 WUBlastX LINE_I 3216 3872 36 + . . C28258 GLEAN mRNA 3417 4139 0.593325 + . ID=CGI_10000414; C28258 WUBlastX LINE_L1-Tx1 4181 5374 325 + . . C28260 GLEAN promoter 891 1890 1 + . ID=CGI_10000415; C28260 GLEAN mRNA 1891 2871 1 + . ID=CGI_10000415; C28260 WUBlastX LINE_RTE-BovB 4390 4473 46 + . . C28260 WUBlastX LINE_RTE-BovB 4957 5010 25 + . . C28272 WUBlastX DNA_Sola 250 834 156 - . . C28272 WUBlastX DNA_Sola 1329 1703 20 - . . C28272 WUBlastX DNA_Sola 1527 1694 132 - . . C28272 WUBlastX DNA_Sola 1563 1721 44 - . . C28272 WUBlastX DNA_Sola 2439 2609 46 - . . C28272 WUBlastX DNA_Sola 2439 2801 44 - . . C28276 GLEAN promoter 262 1261 0.68924 + . ID=CGI_10000416; C28276 GLEAN mRNA 1262 4003 0.68924 + . ID=CGI_10000416; C28282 TRF Tandem_Repeat 1636 1690 110 + . . C28282 TRF Tandem_Repeat 2743 2802 111 + . . C28282 TRF Tandem_Repeat 2993 3050 107 + . . C28282 TRF Tandem_Repeat 3232 3286 110 + . . C28282 TRF Tandem_Repeat 3630 3658 58 + . . C28282 TRF Tandem_Repeat 3660 3707 96 + . . C28282 TRF Tandem_Repeat 3880 3934 110 + . . C28282 WUBlastX LINE_L2 4484 4963 167 - . . C28286 WUBlastX DNA_TcMar-Marin 2331 2423 26 - . . C28286 WUBlastX DNA_TcMar-Tc1 2347 2778 149 - . . C28286 WUBlastX DNA_TcMar-Tc1 2413 2805 236 - . . C28286 WUBlastX DNA_TcMar-Tc1 2745 3293 82 - . . C28286 TRF Tandem_Repeat 5107 5147 82 + . . C28298 WUBlastX LINE_RTE-X 2 1309 753 + . . C28298 WUBlastX LINE_RTE-X 2 1639 605 + . . C28298 WUBlastX LINE_RTE-X 1526 1669 37 + . . C28298 TRF Tandem_Repeat 1886 1912 54 + . . C28306 GLEAN promoter 1 772 1 + . ID=CGI_10000418; C28306 GLEAN mRNA 773 5280 1 + . ID=CGI_10000418; C28310 WUBlastX LINE_Proto2 3 1328 167 - . . C28310 WUBlastX LINE_CR1 1397 1498 20 - . . C28310 WUBlastX LINE_Proto2 1543 1863 51 - . . C28310 WUBlastX LINE_CR1 1648 1980 45 - . . C28310 GLEAN mRNA 1906 2427 0.999064 - . ID=CGI_10000419; C28310 GLEAN promoter 2428 3427 0.999064 - . ID=CGI_10000419; C28310 GLEAN mRNA 2842 3375 0.999372 - . ID=CGI_10000420; C28310 GLEAN promoter 3376 4375 0.999372 - . ID=CGI_10000420; C28316 WUBlastX DNA_Sola 10 240 73 + . . C28316 WUBlastX DNA_Sola 460 735 48 + . . C28340 GLEAN promoter 1 578 0.544839 + . ID=CGI_10000422; C28340 GLEAN mRNA 579 2370 0.544839 + . ID=CGI_10000422; C28348 GLEAN mRNA 161 3806 1 - . ID=CGI_10000423; C28348 WUBlastX LTR_Gypsy 3411 3479 23 + . . C28348 GLEAN promoter 3807 4806 1 - . ID=CGI_10000423; C28348 WUBlastX LTR_Gypsy 4200 5474 1191 + . . C28350 WUBlastX DNA_TcMar-Tc1 3 617 318 + . . C28350 TRF Tandem_Repeat 738 2198 1772 + . . C28350 TRF Tandem_Repeat 738 2198 1786 + . . C28350 TRF Tandem_Repeat 3042 3091 73 + . . C28350 TRF Tandem_Repeat 5277 5346 97 + . . C28364 GLEAN mRNA 998 2662 1 - . ID=CGI_10000424; C28364 GLEAN promoter 2663 3662 1 - . ID=CGI_10000424; C28398 GLEAN promoter 1 39 0.998504 + . ID=CGI_10000426; C28398 GLEAN mRNA 40 2098 0.998504 + . ID=CGI_10000426; C28398 GLEAN promoter 1157 2156 0.55673 + . ID=CGI_10000427; C28398 GLEAN mRNA 2157 3461 0.55673 + . ID=CGI_10000427; C28414 GLEAN promoter 1 72 0.615405 + . ID=CGI_10000429; C28414 GLEAN mRNA 73 546 0.615405 + . ID=CGI_10000429; C28414 WUBlastX DNA_hAT-Tip100 1291 1518 61 + . . C28414 TRF Tandem_Repeat 3378 4701 1263 + . . C28420 GLEAN promoter 519 1518 0.999998 + . ID=CGI_10000430; C28420 GLEAN mRNA 1519 4500 0.999998 + . ID=CGI_10000430; C28426 GLEAN promoter 1817 2816 1 + . ID=CGI_10000433; C28426 GLEAN mRNA 2817 5324 1 + . ID=CGI_10000433; C28430 GLEAN mRNA 3842 4758 1 - . ID=CGI_10000434; C28430 GLEAN promoter 4759 5557 1 - . ID=CGI_10000434; C28450 WUBlastX LINE_L1-Tx1 2155 2424 36 - . . C28450 WUBlastX LINE_L1-Tx1 2206 2424 51 - . . C28456 TRF Tandem_Repeat 1 289 503 + . . C28456 WUBlastX DNA_TcMar-Tc1 1684 1878 22 - . . C28456 WUBlastX DNA_TcMar-Tc1 1869 2093 63 - . . C28456 WUBlastX DNA_TcMar-Tc1 1869 2156 45 - . . C28456 WUBlastX DNA_TcMar-Tc1 2161 2322 54 - . . C28456 WUBlastX DNA_TcMar-Tc1 2164 2265 58 - . . C28456 WUBlastX DNA_TcMar-Tc1 2164 2364 52 - . . C28456 WUBlastX DNA_TcMar-Tc1 2394 2573 45 - . . C28456 TRF Tandem_Repeat 3197 3242 51 + . . C28468 GLEAN promoter 1 324 0.999676 + . ID=CGI_10000436; C28468 GLEAN mRNA 325 5574 0.999676 + . ID=CGI_10000436; C28510 WUBlastX DNA_Sola 658 855 47 - . . C28510 WUBlastX DNA_Sola 691 837 82 - . . C28510 WUBlastX DNA_Sola 1298 1402 69 - . . C28510 WUBlastX DNA_Sola 1597 2199 182 - . . C28510 WUBlastX DNA_Sola 1693 2175 259 - . . C28510 WUBlastX DNA_Sola 2530 2763 30 - . . C28510 WUBlastX DNA_Sola 2575 2772 45 - . . C28510 WUBlastX DNA_Sola 2820 3170 91 - . . C28510 WUBlastX DNA_Sola 2922 3164 159 - . . C28510 WUBlastX DNA_Sola 2928 3254 49 - . . C28510 WUBlastX DNA_Sola 3966 4277 213 - . . C28510 WUBlastX DNA_Sola 4718 5104 20 - . . C28510 WUBlastX DNA_Sola 4718 5008 50 - . . C28512 GLEAN promoter 2694 3693 1 + . ID=CGI_10000437; C28512 GLEAN mRNA 3694 4575 1 + . ID=CGI_10000437; C28512 WUBlastX DNA_Kolobok-IS4 3730 4095 43 + . . C28512 WUBlastX DNA_Kolobok-IS4 4435 4572 82 + . . C28512 WUBlastX DNA_IS4EU 4680 4826 22 + . . C28512 WUBlastX DNA_IS4EU 5448 5612 33 + . . C28514 GLEAN promoter 3839 4838 0.999372 + . ID=CGI_10000439; C28514 GLEAN mRNA 4839 5096 0.999372 + . ID=CGI_10000439; C28536 GLEAN mRNA 2022 5142 0.999676 - . ID=CGI_10000441; C28536 GLEAN promoter 5143 5645 0.999676 - . ID=CGI_10000441; C28540 WUBlastX DNA_TcMar-Marin 1568 1624 21 + . . C28540 WUBlastX DNA_TcMar-Marin 1764 1991 63 + . . C28542 WUBlastX LTR_Ngaro 3007 3390 202 - . . C28544 WUBlastX LTR_Copia 3698 4687 85 - . . C28544 WUBlastX LTR_Gypsy 3878 5662 1737 - . . C28554 TRF Tandem_Repeat 1367 1433 62 + . . C28554 WUBlastX LINE_Penelope 4599 5009 63 + . . C28554 WUBlastX LINE_Penelope 4680 5672 491 + . . C28574 TRF Tandem_Repeat 578 632 110 + . . C28574 WUBlastX LINE_L1-Tx1 2826 3236 101 + . . C28574 WUBlastX LINE_L1-Tx1 2934 3251 252 + . . C28574 WUBlastX LINE_L1-Tx1 3245 3637 131 + . . C28574 WUBlastX LINE_L1-Tx1 3400 3849 195 + . . C28574 WUBlastX LINE_I 4207 4251 20 + . . C28574 GLEAN promoter 4359 5358 0.999372 + . ID=CGI_10000443; C28574 GLEAN mRNA 5359 5577 0.999372 + . ID=CGI_10000443; C28588 TRF Tandem_Repeat 445 491 94 + . . C28588 WUBlastX LINE_Penelope 2717 3640 162 + . . C28588 WUBlastX LTR_Gypsy 3800 5707 747 + . . C28588 WUBlastX LTR_Gypsy 4202 5710 1109 + . . C28592 GLEAN promoter 1193 2192 1 + . ID=CGI_10000444; C28592 GLEAN mRNA 2193 2492 1 + . ID=CGI_10000444; C28592 WUBlastX DNA_Kolobok-Hyd 2199 2411 46 + . . C28602 GLEAN promoter 437 1436 0.618241 + . ID=CGI_10000445; C28602 GLEAN mRNA 1437 1805 0.618241 + . ID=CGI_10000445; C28618 GLEAN mRNA 1304 2494 1 - . ID=CGI_10000446; C28618 GLEAN promoter 2495 3494 1 - . ID=CGI_10000446; C28620 GLEAN promoter 151 1150 0.448963 + . ID=CGI_10000449; C28620 GLEAN mRNA 1151 1945 0.448963 + . ID=CGI_10000449; C28620 WUBlastX LINE_L1-Tx1 2978 3718 62 - . . C28620 WUBlastX LINE_L1-Tx1 3736 3954 58 - . . C28620 TRF Tandem_Repeat 4468 4521 56 + . . C28620 WUBlastX LTR_Gypsy 5163 5492 80 + . . C28620 WUBlastX LTR_Gypsy 5247 5495 89 + . . C28620 WUBlastX LTR_Gypsy 5298 5510 128 + . . C28620 WUBlastX LTR_Gypsy 5301 5558 85 + . . C28622 GLEAN promoter 1 13 0.332993 + . ID=CGI_10000452; C28622 GLEAN mRNA 14 5093 0.332993 + . ID=CGI_10000452; C28622 WUBlastX DNA_Harbinger 323 508 25 + . . C28622 GLEAN mRNA 2391 2693 1 - . ID=CGI_10000453; C28622 GLEAN promoter 2694 3693 1 - . ID=CGI_10000453; C28626 WUBlastX LINE_L1 435 503 22 + . . C28626 WUBlastX LINE_I 531 581 22 + . . C28626 WUBlastX LINE_L2 1064 1762 62 + . . C28626 WUBlastX LINE_RTE-X 1187 2542 432 + . . C28626 WUBlastX LINE_RTE-X 1922 2680 132 + . . C28632 TRF Tandem_Repeat 1 94 74 + . . C28632 GLEAN promoter 3377 4376 0.993526 + . ID=CGI_10000454; C28632 WUBlastX LINE_L1 3405 4097 58 + . . C28632 WUBlastX LINE_L1 3513 4220 122 + . . C28632 GLEAN mRNA 4377 4646 0.993526 + . ID=CGI_10000454; C28632 WUBlastX LINE_CR1 4917 5756 611 - . . C28654 WUBlastX LTR_Gypsy-Cigr 446 850 81 - . . C28654 WUBlastX LTR_Gypsy 557 1042 59 - . . C28654 WUBlastX LTR_Gypsy-Cigr 965 1726 81 - . . C28676 WUBlastX LTR_Ngaro 795 917 47 - . . C28676 TRF Tandem_Repeat 2616 2661 92 + . . C28676 WUBlastX LTR_Ngaro 2821 2973 52 - . . C28676 WUBlastX LTR_Ngaro 2842 2961 65 - . . C28676 WUBlastX LTR_Ngaro 3841 4152 78 - . . C28684 WUBlastX LINE_L2 5153 5332 20 - . . C28684 WUBlastX LINE_L2 5225 5788 110 - . . C28702 WUBlastX DNA_TcMar-Tc1 1671 1919 34 - . . C28702 WUBlastX DNA_TcMar-Tc1 1671 1865 78 - . . C28702 WUBlastX DNA_TcMar-Tc1 2069 2245 52 - . . C28702 WUBlastX DNA_TcMar-Tc1 2114 2248 53 - . . C28702 WUBlastX DNA_TcMar-Tc1 2251 2355 60 - . . C28702 WUBlastX DNA_TcMar-Tc1 2260 2373 50 - . . C28702 WUBlastX DNA_TcMar-Tc1 2382 2516 52 - . . C28702 WUBlastX LTR_Gypsy 4486 5061 202 - . . C28702 WUBlastX LTR_Gypsy 4594 5109 267 - . . C28702 WUBlastX LTR_Gypsy 4624 5055 345 - . . C28702 WUBlastX LTR_Gypsy 5038 5388 215 - . . C28702 WUBlastX LTR_Gypsy 5038 5562 208 - . . C28702 WUBlastX LTR_Gypsy 5038 5325 257 - . . C28702 WUBlastX LTR_Gypsy 5332 5604 171 - . . C28702 WUBlastX LTR_Gypsy 5585 5824 160 - . . C28708 GLEAN mRNA 108 4123 0.521137 - . ID=CGI_10000460; C28708 GLEAN promoter 4124 5123 0.521137 - . ID=CGI_10000460; C28722 GLEAN promoter 1 281 1 + . ID=CGI_10000462; C28722 TRF Tandem_Repeat 1 45 90 + . . C28722 GLEAN mRNA 282 3105 1 + . ID=CGI_10000462; C28722 WUBlastX LINE_Jockey 3608 3673 21 - . . C28722 WUBlastX LINE_CR1 3839 4669 25 - . . C28722 WUBlastX LINE_CR1 4052 4684 100 - . . C28722 WUBlastX LINE_L2 4148 4681 248 - . . C28722 WUBlastX LINE_L2 4333 5388 366 - . . C28722 WUBlastX LINE_L2 4483 5364 512 - . . C28722 WUBlastX LINE_CR1-L2 5409 5834 167 - . . C28728 GLEAN mRNA 370 4316 0.999998 - . ID=CGI_10000463; C28728 GLEAN promoter 4317 5316 0.999998 - . ID=CGI_10000463; C28730 GLEAN promoter 4315 5314 0.995237 + . ID=CGI_10000464; C28730 GLEAN mRNA 5315 5692 0.995237 + . ID=CGI_10000464; C28734 TRF Tandem_Repeat 1980 2025 92 + . . C28734 WUBlastX LINE_L1-Tx1 4008 4649 66 + . . C28734 WUBlastX LINE_RTE-X 4119 5501 647 + . . C28736 GLEAN mRNA 2614 3818 0.998023 - . ID=CGI_10000465; C28736 GLEAN promoter 3819 4818 0.998023 - . ID=CGI_10000465; C28748 TRF Tandem_Repeat 4083 4125 77 + . . C28748 WUBlastX LINE_L1-Tx1 5249 5794 34 - . . C28760 GLEAN promoter 1 795 1 + . ID=CGI_10000466; C28760 GLEAN mRNA 796 4602 1 + . ID=CGI_10000466; C28766 WUBlastX LTR_Gypsy 4656 5879 521 - . . C28766 WUBlastX LTR_Gypsy 4914 5879 569 - . . C28772 WUBlastX DNA_hAT-Blackja 3000 3125 29 - . . C28772 TRF Tandem_Repeat 4292 4349 116 + . . C28772 TRF Tandem_Repeat 4522 4549 56 + . . C28800 WUBlastX LTR_Pao 22 1191 492 + . . C28800 WUBlastX LTR_Pao 700 1278 189 + . . C28802 WUBlastX DNA_Sola 4718 5371 127 - . . C28802 WUBlastX DNA_Sola 4817 5371 148 - . . C28802 WUBlastX DNA_Sola 5678 5914 88 - . . C28808 WUBlastX DNA_Sola 396 1091 328 + . . C28808 WUBlastX LTR_Gypsy 2812 3129 75 + . . C28808 WUBlastX LTR_Gypsy 2824 3186 61 + . . C28808 WUBlastX LTR_Gypsy 2861 3025 80 + . . C28808 WUBlastX LTR_Gypsy 3718 3969 43 + . . C28808 TRF Tandem_Repeat 4126 4173 60 + . . C28822 GLEAN mRNA 817 1731 0.999372 - . ID=CGI_10000469; C28822 GLEAN promoter 1732 2731 0.999372 - . ID=CGI_10000469; C28822 GLEAN mRNA 1943 3628 1 - . ID=CGI_10000470; C28822 GLEAN promoter 3629 4628 1 - . ID=CGI_10000470; C28822 GLEAN mRNA 3672 4667 0.724359 - . ID=CGI_10000471; C28822 GLEAN promoter 4668 5667 0.724359 - . ID=CGI_10000471; C28830 GLEAN mRNA 597 5558 1 - . ID=CGI_10000473; C28830 GLEAN promoter 5559 5934 1 - . ID=CGI_10000473; C28836 GLEAN promoter 1 247 1 + . ID=CGI_10000474; C28836 GLEAN mRNA 248 4053 1 + . ID=CGI_10000474; C28838 GLEAN mRNA 424 5590 1 - . ID=CGI_10000475; C28838 GLEAN promoter 5591 5940 1 - . ID=CGI_10000475; C28840 GLEAN mRNA 2384 4155 0.578819 - . ID=CGI_10000476; C28840 GLEAN promoter 4156 5155 0.578819 - . ID=CGI_10000476; C28840 GLEAN mRNA 4207 4545 0.76438 - . ID=CGI_10000477; C28840 GLEAN promoter 4546 5545 0.76438 - . ID=CGI_10000477; C28846 GLEAN promoter 1 806 0.999938 + . ID=CGI_10000478; C28846 GLEAN mRNA 807 1685 0.999938 + . ID=CGI_10000478; C28858 TRF Tandem_Repeat 1944 1986 86 + . . C28858 WUBlastX DNA_Kolobok 4036 4806 117 + . . C28876 WUBlastX LTR_Gypsy 2 1045 392 + . . C28876 WUBlastX LTR_Gypsy 2 787 429 + . . C28876 WUBlastX LTR_Gypsy-Cigr 4574 5197 119 + . . C28876 WUBlastX LTR_Gypsy 5272 5976 221 + . . C28884 WUBlastX LTR_Gypsy 3 374 236 - . . C28884 WUBlastX LTR_Gypsy 3 497 177 - . . C28902 WUBlastX LTR_Ngaro 5519 6004 86 + . . C28906 GLEAN promoter 1096 2095 0.70125 + . ID=CGI_10000484; C28906 GLEAN mRNA 2096 3854 0.70125 + . ID=CGI_10000484; C28906 TRF Tandem_Repeat 4263 4301 78 + . . C28906 WUBlastX LINE_RTE-X 4561 6000 155 - . . C28906 WUBlastX LINE_RTE-X 4810 6006 198 - . . C28906 WUBlastX LINE_RTE-X 5035 6000 260 - . . C28958 WUBlastX LTR_Gypsy-Cigr 2953 3432 178 + . . C28958 WUBlastX LTR_Gypsy 2968 3714 163 + . . C28958 WUBlastX LTR_Gypsy 3637 4158 79 + . . C28958 WUBlastX LTR_Gypsy 3841 4362 99 + . . C28958 WUBlastX LTR_Gypsy-Cigr 5337 6053 494 + . . C28958 WUBlastX LTR_Gypsy 5475 6053 512 + . . C28982 GLEAN mRNA 756 6077 0.999998 - . ID=CGI_10000485; C28982 GLEAN promoter 6078 6090 0.999998 - . ID=CGI_10000485; C28992 GLEAN mRNA 2648 5948 0.990769 - . ID=CGI_10000486; C28992 GLEAN promoter 5949 6106 0.990769 - . ID=CGI_10000486; C29008 GLEAN mRNA 470 3904 0.660889 - . ID=CGI_10000488; C29008 GLEAN promoter 3905 4904 0.660889 - . ID=CGI_10000488; C29010 WUBlastX LTR_DIRS 4534 5181 53 + . . C29010 WUBlastX LTR_DIRS 4873 5196 53 + . . C29010 WUBlastX LTR_DIRS 4930 5199 63 + . . C29010 WUBlastX LTR_DIRS 5048 5596 112 + . . C29010 WUBlastX LTR_DIRS 5198 5578 112 + . . C29010 WUBlastX LTR_DIRS 5551 6129 344 + . . C29022 WUBlastX LTR_Gypsy 1934 2176 35 + . . C29022 WUBlastX LTR_Gypsy 2085 2321 71 + . . C29022 WUBlastX LTR_Gypsy 2172 2330 125 + . . C29022 WUBlastX LTR_Gypsy 2293 2511 61 + . . C29022 WUBlastX LTR_Gypsy 2374 2574 38 + . . C29022 WUBlastX DNA_Harbinger 4279 4536 65 - . . C29022 WUBlastX DNA_Harbinger 4294 4512 143 - . . C29022 WUBlastX DNA_Harbinger 5409 6083 401 - . . C29048 GLEAN mRNA 1227 2905 0.999345 - . ID=CGI_10000491; C29048 GLEAN promoter 2906 3905 0.999345 - . ID=CGI_10000491; C29052 WUBlastX DNA_Kolobok 211 450 86 - . . C29052 WUBlastX DNA_Kolobok 792 983 47 - . . C29052 WUBlastX DNA_Kolobok 798 947 56 - . . C29052 WUBlastX DNA_Kolobok 1141 1353 68 - . . C29052 WUBlastX DNA_Kolobok 1424 1534 29 - . . C29066 GLEAN promoter 2757 3756 1 + . ID=CGI_10000492; C29066 GLEAN mRNA 3757 4804 1 + . ID=CGI_10000492; C29106 WUBlastX LTR_Ngaro 1992 2219 137 - . . C29106 WUBlastX LTR_Ngaro 2210 2902 205 - . . C29106 WUBlastX LTR_Ngaro 2911 3225 207 - . . C29106 WUBlastX LTR_Ngaro 3258 3617 175 - . . C29106 TRF Tandem_Repeat 3780 3866 104 + . . C29106 TRF Tandem_Repeat 3951 4112 157 + . . C29106 TRF Tandem_Repeat 3952 4140 209 + . . C29106 TRF Tandem_Repeat 4139 4361 239 + . . C29106 WUBlastX LTR_Ngaro 4622 4684 36 - . . C29108 TRF Tandem_Repeat 20 122 93 + . . C29108 WUBlastX LINE_RTE-X 1818 2237 61 + . . C29108 WUBlastX LINE_RTE-X 1818 2075 74 + . . C29134 WUBlastX LTR_Ngaro 4056 5087 68 + . . C29134 WUBlastX LTR_Ngaro 4212 4949 202 + . . C29134 WUBlastX LTR_Ngaro 4479 5060 78 + . . C29134 WUBlastX LTR_Ngaro 5199 6182 667 + . . C29144 GLEAN mRNA 1209 3542 1 - . ID=CGI_10000494; C29144 GLEAN promoter 3543 4542 1 - . ID=CGI_10000494; C29164 GLEAN mRNA 4545 5988 1 - . ID=CGI_10000496; C29164 GLEAN promoter 5989 6289 1 - . ID=CGI_10000496; C29178 GLEAN mRNA 2237 3510 1 - . ID=CGI_10000497; C29178 GLEAN promoter 3511 4510 1 - . ID=CGI_10000497; C29178 WUBlastX LINE_L1-Tx1 4709 5059 213 + . . C29178 WUBlastX LINE_L1-Tx1 5055 6260 253 + . . C29184 WUBlastX LINE_L1-Tx1 5143 5967 182 - . . C29184 WUBlastX LINE_L1-Tx1 5907 6308 215 - . . C29184 WUBlastX LINE_L1-Tx1 5976 6308 220 - . . C29186 WUBlastX LINE_RTE-X 2 283 142 - . . C29186 GLEAN mRNA 314 4810 0.999064 - . ID=CGI_10000500; C29186 WUBlastX LINE_RTE-X 383 1144 216 - . . C29186 TRF Tandem_Repeat 1664 1786 185 + . . C29186 TRF Tandem_Repeat 1674 1802 130 + . . C29186 GLEAN promoter 4811 5810 0.999064 - . ID=CGI_10000500; C29188 WUBlastX LTR_Gypsy 3946 5517 433 - . . C29188 WUBlastX LTR_Gypsy 4345 6315 464 - . . C29202 WUBlastX DNA_IS4EU 4 279 81 - . . C29202 WUBlastX DNA_IS4EU 103 462 42 - . . C29202 WUBlastX DNA_IS4EU 1127 1291 49 - . . C29202 WUBlastX DNA_IS4EU 1148 1276 55 - . . C29202 GLEAN promoter 1878 2877 0.69447 + . ID=CGI_10000501; C29202 WUBlastX DNA_IS4EU 2073 2162 52 - . . C29202 WUBlastX DNA_IS4EU 2459 2668 64 - . . C29202 GLEAN mRNA 2878 3102 0.69447 + . ID=CGI_10000501; C29222 GLEAN mRNA 262 3974 0.841405 - . ID=CGI_10000504; C29222 GLEAN promoter 3975 4974 0.841405 - . ID=CGI_10000504; C29224 GLEAN promoter 1646 2645 0.526132 + . ID=CGI_10000505; C29224 GLEAN mRNA 2646 4623 0.526132 + . ID=CGI_10000505; C29238 GLEAN promoter 2156 3155 1 + . ID=CGI_10000507; C29238 GLEAN mRNA 3156 6174 1 + . ID=CGI_10000507; C29244 WUBlastX DNA_TcMar-Marin 118 501 72 + . . C29244 GLEAN promoter 231 1230 1 + . ID=CGI_10000509; C29244 WUBlastX DNA_TcMar-Marin 584 904 110 + . . C29244 WUBlastX DNA_TcMar-Marin 765 1043 27 + . . C29244 GLEAN mRNA 1231 2840 1 + . ID=CGI_10000509; C29246 GLEAN promoter 1 637 0.777732 + . ID=CGI_10000508; C29246 GLEAN mRNA 638 5778 0.777732 + . ID=CGI_10000508; C29248 WUBlastX DNA_Zator 264 695 97 + . . C29248 WUBlastX DNA_Zator 707 1567 464 + . . C29248 WUBlastX DNA_Zator 1569 2066 124 + . . C29248 WUBlastX DNA_Zator 2103 2627 72 + . . C29248 WUBlastX DNA_Zator 2241 2633 88 + . . C29260 GLEAN mRNA 1882 2538 0.6496 - . ID=CGI_10000510; C29260 GLEAN promoter 2539 3538 0.6496 - . ID=CGI_10000510; C29260 WUBlastX LINE_L1-Tx1 3738 4004 57 + . . C29260 WUBlastX LINE_L1-Tx1 3789 4268 61 + . . C29272 WUBlastX DNA_Harbinger 1602 1910 45 - . . C29272 TRF Tandem_Repeat 4019 4126 74 + . . C29280 WUBlastX LTR_Gypsy 2244 2768 26 + . . C29280 TRF Tandem_Repeat 5829 5877 98 + . . C29290 GLEAN mRNA 1012 1495 1 - . ID=CGI_10000512; C29290 GLEAN promoter 1496 2495 1 - . ID=CGI_10000512; C29290 WUBlastX LTR_DIRS 3479 3736 107 + . . C29290 WUBlastX LTR_DIRS 3527 3910 119 + . . C29290 WUBlastX LTR_DIRS 3527 3811 125 + . . C29290 WUBlastX LTR_DIRS 3907 4068 105 + . . C293 WUBlastX LTR_DIRS 5 100 56 + . . C29300 WUBlastX LINE_L1-Tx1 1719 2138 87 - . . C29300 GLEAN mRNA 3159 4031 0.612723 - . ID=CGI_10000519; C29300 GLEAN promoter 4032 5031 0.612723 - . ID=CGI_10000519; C29320 GLEAN promoter 206 1205 0.544851 + . ID=CGI_10000520; C29320 GLEAN mRNA 1206 6434 0.544851 + . ID=CGI_10000520; C29348 WUBlastX LINE_L2 1608 2063 28 + . . C29348 WUBlastX LINE_L2 2180 2287 42 + . . C29348 TRF Tandem_Repeat 4401 4487 79 + . . C29348 TRF Tandem_Repeat 4409 4484 52 + . . C29348 TRF Tandem_Repeat 5487 5649 141 + . . C29354 GLEAN mRNA 2625 4382 0.996819 - . ID=CGI_10000523; C29354 GLEAN promoter 4383 5382 0.996819 - . ID=CGI_10000523; C29356 GLEAN mRNA 201 6135 0.651133 - . ID=CGI_10000524; C29356 GLEAN promoter 6136 6514 0.651133 - . ID=CGI_10000524; C29380 WUBlastX LINE_L1-Tx1 5287 6537 430 - . . C29388 GLEAN promoter 255 1254 0.998536 + . ID=CGI_10000526; C29388 GLEAN mRNA 1255 5572 0.998536 + . ID=CGI_10000526; C29388 TRF Tandem_Repeat 2704 2944 441 + . . C29388 WUBlastX LTR_Gypsy 3690 4307 99 + . . C29388 WUBlastX LTR_Gypsy-Cigr 3837 4310 153 + . . C29388 WUBlastX LTR_Gypsy-Cigr 3852 4424 138 + . . C29388 WUBlastX LINE_RTE-X 5015 5521 86 + . . C29388 WUBlastX LINE_RTE-X 5096 5611 41 + . . C29388 TRF Tandem_Repeat 6302 6520 201 + . . C29388 TRF Tandem_Repeat 6385 6488 59 + . . C29388 TRF Tandem_Repeat 6418 6520 75 + . . C29398 TRF Tandem_Repeat 1605 1795 147 + . . C29398 TRF Tandem_Repeat 2693 2819 132 + . . C29398 WUBlastX LTR_Gypsy 4994 6574 746 + . . C29410 WUBlastX LTR_Gypsy 3 206 20 + . . C29410 WUBlastX LTR_Gypsy 47 1168 206 + . . C29410 WUBlastX LTR_Gypsy 218 1435 558 + . . C29414 TRF Tandem_Repeat 1665 1702 58 + . . C29414 WUBlastX LINE_RTE-X 5115 5966 220 - . . C29414 WUBlastX LINE_RTE-X 5843 6577 269 - . . C29414 WUBlastX LINE_RTE-X 5951 6571 294 - . . C29416 GLEAN promoter 1 367 0.998421 + . ID=CGI_10000527; C29416 GLEAN mRNA 368 1399 0.998421 + . ID=CGI_10000527; C29424 WUBlastX LINE_RTE-X 438 1127 142 + . . C29424 TRF Tandem_Repeat 2195 2239 90 + . . C29424 TRF Tandem_Repeat 4247 4307 115 + . . C29424 TRF Tandem_Repeat 4355 4389 61 + . . C29424 TRF Tandem_Repeat 5118 5175 107 + . . C29424 TRF Tandem_Repeat 5347 5376 51 + . . C29424 TRF Tandem_Repeat 5374 5399 52 + . . C29424 TRF Tandem_Repeat 5452 5520 58 + . . C29424 TRF Tandem_Repeat 5464 5519 51 + . . C29424 TRF Tandem_Repeat 5652 5683 64 + . . C29424 TRF Tandem_Repeat 5716 5782 59 + . . C29428 WUBlastX LTR_Gypsy 3 803 689 + . . C29428 WUBlastX LTR_Gypsy 806 1915 826 + . . C29428 TRF Tandem_Repeat 2380 2461 110 + . . C29428 TRF Tandem_Repeat 3940 3994 110 + . . C29432 GLEAN mRNA 3823 6185 1 - . ID=CGI_10000533; C29432 GLEAN promoter 6186 6617 1 - . ID=CGI_10000533; C29438 GLEAN promoter 1 532 1 + . ID=CGI_10000534; C29438 GLEAN mRNA 533 5889 1 + . ID=CGI_10000534; C29438 WUBlastX LINE_RTE-X 2486 2695 84 + . . C29438 WUBlastX LINE_RTE-X 2504 2878 37 + . . C29438 WUBlastX LINE_RTE-X 2525 2809 73 + . . C29438 WUBlastX LINE_RTE-X 2525 2746 99 + . . C29438 WUBlastX LINE_RTE-X 2525 2695 109 + . . C29438 WUBlastX LINE_L2 3436 3993 55 + . . C29438 WUBlastX LINE_RTE-X 3544 3996 110 + . . C29438 WUBlastX LINE_RTE-X 3631 4029 182 + . . C29438 WUBlastX LINE_L1-Tx1 4037 4129 24 + . . C29438 WUBlastX LINE_RTE-X 4058 4372 173 + . . C29438 WUBlastX LINE_RTE-X 4058 4435 112 + . . C29438 WUBlastX LINE_RTE-X 4440 5207 220 + . . C29450 TRF Tandem_Repeat 539 684 103 + . . C29450 TRF Tandem_Repeat 594 684 146 + . . C29450 GLEAN mRNA 833 4095 0.999675 - . ID=CGI_10000535; C29450 GLEAN promoter 4096 5095 0.999675 - . ID=CGI_10000535; C29450 WUBlastX LINE_Penelope 4944 5384 250 + . . C29450 WUBlastX LINE_Penelope 5417 5767 199 + . . C29450 WUBlastX LINE_Penelope 5782 6330 97 + . . C29450 WUBlastX LINE_Penelope 5803 6258 124 + . . C29474 GLEAN mRNA 2236 5798 0.999993 - . ID=CGI_10000537; C29474 GLEAN promoter 5799 6674 0.999993 - . ID=CGI_10000537; C29498 TRF Tandem_Repeat 89 195 135 + . . C29498 TRF Tandem_Repeat 1661 1751 137 + . . C29498 WUBlastX LINE_L1 1762 1986 52 - . . C29498 WUBlastX LINE_L1-Tx1 1804 1998 147 - . . C29498 WUBlastX LINE_L1-Tx1 1804 2040 55 - . . C29498 TRF Tandem_Repeat 2583 2705 84 + . . C29498 WUBlastX LTR_Pao 4718 5440 63 + . . C29498 WUBlastX LTR_Pao 4862 6391 173 + . . C29498 WUBlastX LTR_Pao 6455 6691 123 + . . C29506 TRF Tandem_Repeat 289 339 66 + . . C29506 TRF Tandem_Repeat 290 332 68 + . . C29506 TRF Tandem_Repeat 344 1282 1234 + . . C29506 WUBlastX LINE_L1-Tx1 1466 3553 794 - . . C29506 WUBlastX LINE_L1-Tx1 3558 5111 805 - . . C29506 WUBlastX LINE_L1 6091 6579 49 - . . C29506 WUBlastX LINE_L1 6196 6615 54 - . . C29506 WUBlastX LINE_L2 6205 6690 35 - . . C29506 WUBlastX LINE_L2 6214 6546 55 - . . C29510 GLEAN promoter 3750 4749 0.999372 + . ID=CGI_10000538; C29510 GLEAN mRNA 4750 5031 0.999372 + . ID=CGI_10000538; C29510 GLEAN mRNA 5459 5647 0.717991 - . ID=CGI_10000539; C29510 GLEAN promoter 5648 6647 0.717991 - . ID=CGI_10000539; C29526 GLEAN mRNA 4699 5244 0.999673 - . ID=CGI_10000543; C29526 GLEAN promoter 5245 6244 0.999673 - . ID=CGI_10000543; C29530 GLEAN promoter 1 65 1 + . ID=CGI_10000545; C29530 GLEAN mRNA 66 932 1 + . ID=CGI_10000545; C29538 WUBlastX DNA_IS4EU 607 1179 62 + . . C29538 TRF Tandem_Repeat 6149 6196 96 + . . C29540 WUBlastX DNA_TcMar-Marin 5507 5674 57 + . . C29542 WUBlastX DNA_TcMar-Marin 801 857 26 - . . C29542 WUBlastX DNA_TcMar-Marin 960 1316 42 - . . C29542 GLEAN promoter 4033 5032 0.866307 + . ID=CGI_10000546; C29542 GLEAN mRNA 5033 5245 0.866307 + . ID=CGI_10000546; C29554 WUBlastX DNA_Maverick 1760 2086 66 - . . C29554 WUBlastX DNA_IS4EU 2580 3119 53 + . . C29554 WUBlastX DNA_IS4EU 3452 3577 24 + . . C29558 WUBlastX LINE_RTE-X 256 603 142 - . . C29558 WUBlastX LINE_RTE-X 2224 3729 505 - . . C29558 WUBlastX LINE_L2 3496 3831 61 - . . C29558 WUBlastX LINE_L2 3834 3887 20 - . . C29558 WUBlastX LTR_Gypsy 4979 5071 28 - . . C29558 WUBlastX LTR_Gypsy-Cigr 5009 5101 49 - . . C29558 WUBlastX LTR_Gypsy 5124 5216 23 - . . C29558 WUBlastX LTR_Gypsy 5151 5816 430 - . . C29558 WUBlastX LTR_Gypsy 5840 6538 224 - . . C29558 WUBlastX LTR_Gypsy 5870 6460 498 - . . C29558 WUBlastX LTR_Gypsy 6382 6600 136 - . . C29558 WUBlastX LTR_Gypsy 6412 6684 134 - . . C29558 WUBlastX LTR_Gypsy 6412 6567 153 - . . C29558 WUBlastX LTR_Gypsy 6552 6755 130 - . . C29576 WUBlastX LTR_DIRS 150 389 118 - . . C29576 WUBlastX LTR_DIRS 394 834 44 - . . C29576 WUBlastX LTR_DIRS 394 696 138 - . . C29576 WUBlastX LTR_DIRS 830 1258 47 - . . C29576 WUBlastX LTR_DIRS 890 1219 85 - . . C29576 WUBlastX LTR_DIRS 1236 1517 188 - . . C29576 WUBlastX LTR_Gypsy 1520 1807 32 - . . C29576 WUBlastX LTR_Ngaro 1544 1753 43 - . . C29576 GLEAN mRNA 1854 2093 0.999984 - . ID=CGI_10000547; C29576 GLEAN promoter 2094 3093 0.999984 - . ID=CGI_10000547; C29576 WUBlastX LTR_DIRS 2095 2304 20 - . . C29584 TRF Tandem_Repeat 2629 3550 1361 + . . C29584 WUBlastX LINE_Penelope 4850 5086 60 - . . C29584 WUBlastX LINE_Penelope 5104 6642 549 - . . C29618 TRF Tandem_Repeat 3067 3119 106 + . . C29618 WUBlastX LINE_CR1 6262 6807 78 + . . C29618 WUBlastX LINE_CR1-L2 6334 6777 137 + . . C29618 WUBlastX LINE_CR1-L2 6415 6795 148 + . . C29618 WUBlastX LINE_CR1-L2 6779 6829 21 + . . C29620 TRF Tandem_Repeat 435 480 76 + . . C29620 WUBlastX LINE_CR1-L2 1846 2442 182 + . . C29620 WUBlastX LINE_L2 1957 2454 247 + . . C29620 WUBlastX LINE_L2 2486 3094 113 + . . C29620 WUBlastX LINE_CR1-L2 2489 2896 122 + . . C29620 WUBlastX LINE_L2 3108 3779 408 + . . C29620 WUBlastX LINE_L2 3767 4261 305 + . . C29620 WUBlastX LINE_L2 4276 4791 57 + . . C29620 WUBlastX LINE_L2 4279 4710 251 + . . C29620 WUBlastX LINE_CR1-L2 4698 4955 31 + . . C29632 WUBlastX LINE_CR1-L2 6591 6869 84 + . . C29638 GLEAN promoter 2107 3106 0.649524 + . ID=CGI_10000551; C29638 GLEAN mRNA 3107 3865 0.649524 + . ID=CGI_10000551; C29642 GLEAN promoter 1 54 0.650997 + . ID=CGI_10000552; C29642 GLEAN mRNA 55 6813 0.650997 + . ID=CGI_10000552; C29670 WUBlastX LINE_L1-Tx1 1953 2207 20 + . . C29670 TRF Tandem_Repeat 2455 2501 94 + . . C29680 TRF Tandem_Repeat 2717 2758 59 + . . C29680 TRF Tandem_Repeat 3337 3408 128 + . . C29680 WUBlastX LINE_L1-Tx1 4552 4833 47 - . . C29736 TRF Tandem_Repeat 248 279 55 + . . C29736 WUBlastX LINE_L1 1933 2619 79 - . . C29736 WUBlastX LINE_L1-Tx1 3033 3338 50 + . . C29736 WUBlastX LINE_L1-Tx1 3177 3368 48 + . . C29736 WUBlastX LINE_L1 3601 3786 28 + . . C29750 GLEAN promoter 3659 4658 1 + . ID=CGI_10000555; C29750 GLEAN mRNA 4659 6590 1 + . ID=CGI_10000555; C29764 GLEAN mRNA 1674 6864 0.999998 - . ID=CGI_10000556; C29764 GLEAN promoter 6865 7016 0.999998 - . ID=CGI_10000556; C29768 GLEAN promoter 3875 4874 1 + . ID=CGI_10000557; C29768 GLEAN mRNA 4875 5399 1 + . ID=CGI_10000557; C29774 WUBlastX LINE_Proto2 206 418 49 - . . C29774 WUBlastX LINE_CR1 245 427 59 - . . C29774 WUBlastX LINE_L2 272 457 54 - . . C29774 WUBlastX LINE_Jockey 272 415 65 - . . C29774 TRF Tandem_Repeat 1848 1886 53 + . . C29774 TRF Tandem_Repeat 4047 4083 74 + . . C29786 GLEAN promoter 1 125 0.99813 + . ID=CGI_10000559; C29786 GLEAN mRNA 126 5266 0.99813 + . ID=CGI_10000559; C29786 WUBlastX LINE_RTE-X 5964 7034 566 + . . C29788 TRF Tandem_Repeat 3386 3434 98 + . . C29788 GLEAN promoter 4498 5497 0.72793 + . ID=CGI_10000560; C29788 GLEAN mRNA 5498 6724 0.72793 + . ID=CGI_10000560; C29788 WUBlastX LINE_L1 5576 6241 80 + . . C29788 WUBlastX LINE_L1 5714 6286 88 + . . C29788 WUBlastX LINE_L1 5843 6376 64 + . . C29788 TRF Tandem_Repeat 6848 6979 55 + . . C29788 TRF Tandem_Repeat 6856 6973 69 + . . C29798 GLEAN mRNA 2394 6791 0.999074 - . ID=CGI_10000561; C29798 GLEAN promoter 6792 7060 0.999074 - . ID=CGI_10000561; C29848 GLEAN promoter 1 457 1 + . ID=CGI_10000573; C29848 GLEAN mRNA 458 3754 1 + . ID=CGI_10000573; C29848 WUBlastX DNA_PiggyBac 6357 7112 316 + . . C29882 WUBlastX LTR_Ngaro 1676 2047 50 + . . C29882 WUBlastX LTR_Ngaro 1826 2053 84 + . . C29882 WUBlastX LTR_Ngaro 1826 2122 36 + . . C29882 WUBlastX LTR_Gypsy 2247 2822 43 + . . C29882 WUBlastX LTR_Gypsy 2370 2825 154 + . . C29882 WUBlastX LTR_Gypsy 2397 2924 112 + . . C29882 WUBlastX LTR_Gypsy 3422 3706 42 + . . C29902 GLEAN mRNA 4137 5735 0.69447 - . ID=CGI_10000577; C29902 GLEAN promoter 5736 6735 0.69447 - . ID=CGI_10000577; C29914 WUBlastX LINE_RTE-BovB 1640 1705 47 + . . C29914 WUBlastX LINE_RTE-BovB 1678 1770 54 + . . C29914 WUBlastX LINE_RTE-BovB 1772 1993 61 + . . C29914 WUBlastX LINE_RTE-BovB 1951 2070 23 + . . C29936 TRF Tandem_Repeat 1 334 600 + . . C29936 WUBlastX DNA_En-Spm 446 1561 443 - . . C29936 WUBlastX DNA_En-Spm 1567 2067 377 - . . C29936 WUBlastX DNA_En-Spm 2070 2738 374 - . . C29936 WUBlastX DNA_En-Spm 2097 2645 378 - . . C29936 WUBlastX DNA_En-Spm 2106 2861 42 - . . C29942 WUBlastX LTR_Ngaro 2 454 270 + . . C29942 WUBlastX LTR_Ngaro 419 1357 347 + . . C29942 WUBlastX LTR_Ngaro 1091 1411 38 + . . C29942 TRF Tandem_Repeat 2665 2743 63 + . . C29942 TRF Tandem_Repeat 2673 2738 53 + . . C29954 WUBlastX DNA_TcMar-Tc1 3347 4318 341 - . . C29954 WUBlastX DNA_TcMar-Tc1 4217 4345 24 - . . C29956 GLEAN mRNA 2633 3909 0.999998 - . ID=CGI_10000578; C29956 GLEAN promoter 3910 4909 0.999998 - . ID=CGI_10000578; C29956 GLEAN mRNA 4550 5671 0.579463 - . ID=CGI_10000579; C29956 GLEAN promoter 5672 6671 0.579463 - . ID=CGI_10000579; C29958 WUBlastX LINE_RTE-X 9 386 48 + . . C29958 WUBlastX LINE_RTE-X 15 905 32 + . . C29958 WUBlastX LINE_RTE-X 48 359 83 + . . C29958 WUBlastX LINE_CR1 2814 3494 233 + . . C29958 TRF Tandem_Repeat 6868 6924 96 + . . C29960 GLEAN mRNA 2109 3506 1 - . ID=CGI_10000580; C29960 GLEAN promoter 3507 4506 1 - . ID=CGI_10000580; C29968 WUBlastX LTR_Gypsy 9 1526 1149 - . . C29968 WUBlastX LTR_Gypsy 1514 1801 275 - . . C29968 WUBlastX LINE_Proto2 1901 2227 60 + . . C29968 WUBlastX LINE_Proto2 1976 2500 85 + . . C29968 WUBlastX LINE_RTE-X 2467 3612 345 + . . C29968 WUBlastX LINE_L2 2563 3807 46 + . . C29970 TRF Tandem_Repeat 1840 1882 59 + . . C29970 WUBlastX LINE_CR1-L2 5183 5272 24 - . . C29970 WUBlastX LINE_L2 5675 5896 56 - . . C29970 WUBlastX LINE_CR1-L2 5705 5884 87 - . . C29970 WUBlastX LINE_CR1-L2 5878 5952 48 - . . C29974 TRF Tandem_Repeat 731 989 299 + . . C29974 TRF Tandem_Repeat 731 980 321 + . . C29974 TRF Tandem_Repeat 1639 1773 117 + . . C29974 WUBlastX LINE_L2 1822 1914 20 + . . C29974 WUBlastX LINE_L2 1849 1914 30 + . . C29974 WUBlastX LINE_RTE-X 1861 1914 46 + . . C29974 WUBlastX LINE_RTE-X 1916 2233 124 + . . C29974 WUBlastX LINE_RTE-X 2027 2245 141 + . . C29974 WUBlastX LINE_RTE-X 2247 2390 85 + . . C29974 WUBlastX LINE_RTE-X 3965 4327 145 + . . C29974 TRF Tandem_Repeat 4527 4750 198 + . . C29974 TRF Tandem_Repeat 4533 4750 339 + . . C29974 TRF Tandem_Repeat 4555 4750 221 + . . C29974 TRF Tandem_Repeat 5976 6174 222 + . . C29974 TRF Tandem_Repeat 5984 6174 210 + . . C29974 WUBlastX LINE_RTE-X 6178 6432 55 + . . C29974 WUBlastX LINE_RTE-X 6238 6435 64 + . . C29974 TRF Tandem_Repeat 6452 6572 122 + . . C29976 GLEAN promoter 749 1748 0.999895 + . ID=CGI_10000582; C29976 GLEAN mRNA 1749 4066 0.999895 + . ID=CGI_10000582; C29980 TRF Tandem_Repeat 1561 1664 133 + . . C29980 TRF Tandem_Repeat 2234 2273 80 + . . C29980 TRF Tandem_Repeat 2471 2525 92 + . . C29980 TRF Tandem_Repeat 2767 3033 408 + . . C29980 WUBlastX LINE_L2 5717 5875 28 - . . C29980 WUBlastX LINE_CR1-L2 6105 6290 37 - . . C29980 WUBlastX LINE_L2 6298 6450 32 - . . C29982 WUBlastX LTR_Gypsy 3 335 147 - . . C29982 WUBlastX LTR_Gypsy 6 464 66 - . . C29982 WUBlastX LTR_Gypsy 5555 5719 26 - . . C29982 WUBlastX LTR_Gypsy 5668 6159 30 - . . C29982 WUBlastX LTR_Gypsy 5749 6240 99 - . . C29982 WUBlastX LTR_ERV1 6182 6505 74 - . . C29982 WUBlastX LTR_Gypsy 6197 6403 107 - . . C29982 WUBlastX LTR_ERV1 6736 6792 21 - . . C29994 GLEAN mRNA 2950 4999 1 - . ID=CGI_10000585; C29994 GLEAN promoter 5000 5999 1 - . ID=CGI_10000585; C30006 WUBlastX LINE_L1-Tx1 3896 4027 36 + . . C30022 WUBlastX LTR_Pao 2 2089 1223 - . . C30022 WUBlastX LTR_Pao 1442 2236 56 - . . C30022 TRF Tandem_Repeat 2753 2828 98 + . . C30022 WUBlastX LTR_Pao 3067 3255 48 - . . C30022 TRF Tandem_Repeat 3957 4022 71 + . . C30040 GLEAN promoter 1 563 0.999754 + . ID=CGI_10000588; C30040 GLEAN mRNA 564 5528 0.999754 + . ID=CGI_10000588; C30044 GLEAN promoter 152 1151 0.999938 + . ID=CGI_10000590; C30044 GLEAN mRNA 1152 5847 0.999938 + . ID=CGI_10000590; C30046 GLEAN promoter 1 201 0.480335 + . ID=CGI_10000591; C30046 GLEAN mRNA 202 6592 0.480335 + . ID=CGI_10000591; C30058 GLEAN mRNA 650 4812 0.700712 - . ID=CGI_10000592; C30058 WUBlastX LINE_L2 1567 1830 58 + . . C30058 WUBlastX LINE_L2 1609 2175 192 + . . C30058 GLEAN promoter 4813 5812 0.700712 - . ID=CGI_10000592; C30060 GLEAN mRNA 3615 7125 0.999074 - . ID=CGI_10000593; C30060 GLEAN promoter 7126 7379 0.999074 - . ID=CGI_10000593; C30072 WUBlastX LINE_L1 2287 2559 28 + . . C30072 WUBlastX LINE_L2 2601 2966 95 + . . C30072 WUBlastX LINE_L1 2676 2996 117 + . . C30072 WUBlastX LINE_L1-Tx1 2965 3240 52 + . . C30072 WUBlastX LINE_L1 2965 3174 93 + . . C30072 WUBlastX LINE_RTE-X 3289 3540 92 + . . C30072 WUBlastX LINE_RTE-X 3552 3908 28 + . . C30072 WUBlastX LINE_RTE-BovB 4385 4663 109 + . . C30072 WUBlastX LINE_RTE-X 4427 4690 164 + . . C30072 WUBlastX LINE_RTE-X 4704 5507 289 + . . C30072 WUBlastX LINE_RTE-X 4707 5999 51 + . . C30072 WUBlastX LINE_RTE-X 5787 6113 22 + . . C30072 WUBlastX LINE_RTE-X 5787 6014 66 + . . C30072 WUBlastX LINE_RTE-X 5835 6002 87 + . . C30072 WUBlastX LINE_RTE-X 6413 7384 267 - . . C30084 WUBlastX LINE_L1-Tx1 2917 3012 20 + . . C30084 WUBlastX LINE_RTE-X 3535 4791 642 + . . C30084 WUBlastX LINE_Penelope 4802 5092 180 + . . C30084 WUBlastX LINE_Penelope 5088 5240 43 + . . C30084 WUBlastX LINE_Penelope 5218 5799 81 + . . C30084 WUBlastX LINE_Penelope 5446 5721 88 + . . C30084 WUBlastX LINE_Penelope 5452 5793 82 + . . C30118 GLEAN promoter 1 632 0.543283 + . ID=CGI_10000594; C30118 WUBlastX LINE_CR1-L2 284 463 117 + . . C30118 WUBlastX LINE_Rex-Babar 323 751 32 + . . C30118 GLEAN mRNA 633 6001 0.543283 + . ID=CGI_10000594; C30126 GLEAN promoter 1020 2019 1 + . ID=CGI_10000595; C30126 GLEAN mRNA 2020 5205 1 + . ID=CGI_10000595; C30130 GLEAN promoter 4683 5682 1 + . ID=CGI_10000596; C30130 GLEAN mRNA 5683 6900 1 + . ID=CGI_10000596; C30140 GLEAN promoter 968 1967 0.618186 + . ID=CGI_10000597; C30140 WUBlastX LTR_Gypsy 1794 2000 33 + . . C30140 WUBlastX LTR_Gypsy 1842 2024 40 + . . C30140 GLEAN mRNA 1968 2204 0.618186 + . ID=CGI_10000597; C30140 GLEAN mRNA 2787 6368 0.999994 - . ID=CGI_10000598; C30140 GLEAN promoter 6369 7368 0.999994 - . ID=CGI_10000598; C30144 WUBlastX DNA_Harbinger 646 1368 362 - . . C30144 GLEAN mRNA 3559 3927 0.69447 - . ID=CGI_10000599; C30144 GLEAN promoter 3928 4927 0.69447 - . ID=CGI_10000599; C30144 GLEAN mRNA 3966 4277 0.481188 - . ID=CGI_10000600; C30144 GLEAN promoter 4278 5277 0.481188 - . ID=CGI_10000600; C30144 TRF Tandem_Repeat 4589 4616 56 + . . C30162 GLEAN promoter 191 1190 0.999255 + . ID=CGI_10000603; C30162 GLEAN mRNA 1191 7330 0.999255 + . ID=CGI_10000603; C30166 GLEAN promoter 1 20 0.999566 + . ID=CGI_10000604; C30166 GLEAN mRNA 21 5103 0.999566 + . ID=CGI_10000604; C30176 WUBlastX DNA_Harbinger 3973 4140 69 + . . C30176 WUBlastX DNA_Harbinger 5211 5261 30 - . . C30176 WUBlastX DNA_Harbinger 5217 5273 24 - . . C30176 WUBlastX DNA_Harbinger 5486 5815 161 - . . C30176 WUBlastX DNA_Harbinger 5486 5881 125 - . . C30176 TRF Tandem_Repeat 6224 6262 78 + . . C30176 WUBlastX LTR_DIRS 7226 7516 93 + . . C30186 TRF Tandem_Repeat 227 329 73 + . . C30186 GLEAN mRNA 3872 5098 1 - . ID=CGI_10000605; C30186 GLEAN promoter 5099 6098 1 - . ID=CGI_10000605; C30186 WUBlastX LINE_RTE-X 5238 7511 804 + . . C30186 WUBlastX LINE_RTE-X 5643 7520 961 + . . C30188 WUBlastX LINE_RTE-X 2014 3318 589 - . . C30188 TRF Tandem_Repeat 3797 3843 94 + . . C30188 WUBlastX LINE_RTE-X 4657 4938 73 + . . C30216 GLEAN mRNA 594 2258 1 - . ID=CGI_10000606; C30216 GLEAN promoter 2259 3258 1 - . ID=CGI_10000606; C30216 WUBlastX DNA_hAT-Tip100 3161 3427 56 + . . C30216 WUBlastX DNA_hAT-Tip100 3212 3445 177 + . . C30216 WUBlastX DNA_hAT-Tip100 3233 3562 90 + . . C30216 TRF Tandem_Repeat 7001 7070 54 + . . C30224 WUBlastX LINE_L2 2808 3740 263 - . . C30224 WUBlastX LINE_L2 3586 4260 408 - . . C30224 WUBlastX LINE_L2 3586 4548 346 - . . C30224 WUBlastX LINE_CR1 4802 4873 20 - . . C30224 WUBlastX LINE_CR1 4835 4888 25 - . . C30226 WUBlastX DNA_Harbinger 2785 3717 786 + . . C30226 WUBlastX DNA_Harbinger 3693 3938 184 + . . C30238 WUBlastX LTR_Pao 1 573 596 + . . C30238 WUBlastX LTR_Pao 582 623 21 + . . C30238 WUBlastX LTR_Pao 597 3080 1944 + . . C30238 TRF Tandem_Repeat 3904 3970 80 + . . C30238 GLEAN promoter 5110 6109 0.618186 + . ID=CGI_10000608; C30238 GLEAN mRNA 6110 6271 0.618186 + . ID=CGI_10000608; C30240 GLEAN promoter 2559 3558 0.999068 + . ID=CGI_10000607; C30240 GLEAN mRNA 3559 3885 0.999068 + . ID=CGI_10000607; C30282 GLEAN mRNA 873 3481 1 - . ID=CGI_10000611; C30282 GLEAN promoter 2553 3552 0.998023 + . ID=CGI_10000612; C30282 GLEAN promoter 3482 4481 1 - . ID=CGI_10000611; C30282 GLEAN mRNA 3553 6462 0.998023 + . ID=CGI_10000612; C30292 WUBlastX LTR_Ngaro 2 682 368 - . . C30292 WUBlastX LTR_Ngaro 475 1440 158 - . . C30292 WUBlastX LTR_Ngaro 679 1260 406 - . . C30292 WUBlastX LTR_Ngaro 1494 2396 94 - . . C30292 WUBlastX LTR_Ngaro 1554 1973 232 - . . C30292 TRF Tandem_Repeat 6617 6653 65 + . . C30294 WUBlastX LTR_DIRS 2 736 478 + . . C30294 WUBlastX LTR_DIRS 717 1520 417 + . . C30294 WUBlastX LTR_DIRS 720 1397 424 + . . C30294 WUBlastX LTR_DIRS 1364 1738 228 + . . C30294 WUBlastX LTR_DIRS 1714 2070 140 + . . C30294 WUBlastX LTR_DIRS 2073 2159 39 + . . C30294 WUBlastX LTR_DIRS 2073 2144 50 + . . C30294 TRF Tandem_Repeat 2554 2611 82 + . . C30294 TRF Tandem_Repeat 4413 5443 1276 + . . C30296 GLEAN mRNA 1778 3442 1 - . ID=CGI_10000613; C30296 GLEAN promoter 3443 4442 1 - . ID=CGI_10000613; C30300 GLEAN promoter 1 46 1 + . ID=CGI_10000614; C30300 GLEAN mRNA 47 967 1 + . ID=CGI_10000614; C30300 GLEAN mRNA 2059 5209 0.993907 - . ID=CGI_10000615; C30300 GLEAN promoter 5210 6209 0.993907 - . ID=CGI_10000615; C30322 WUBlastX LTR_Gypsy 1 1950 1522 - . . C30322 TRF Tandem_Repeat 2433 2476 88 + . . C30324 WUBlastX DNA_Kolobok 146 1777 84 - . . C30324 WUBlastX LINE_L1-Tx1 3380 4213 399 - . . C30324 WUBlastX LINE_L1-Tx1 4216 5004 218 - . . C30324 WUBlastX LINE_L1-Tx1 4249 4908 283 - . . C30324 WUBlastX LINE_L1 4288 5193 95 - . . C30340 GLEAN mRNA 5374 7545 1 - . ID=CGI_10000616; C30340 GLEAN promoter 7546 7704 1 - . ID=CGI_10000616; C30362 GLEAN promoter 446 1445 1 + . ID=CGI_10000619; C30362 GLEAN mRNA 1446 7523 1 + . ID=CGI_10000619; C30458 GLEAN mRNA 986 6010 1 - . ID=CGI_10000625; C30458 WUBlastX LINE_L1 5080 5529 193 + . . C30458 WUBlastX LINE_L1 5525 5845 96 + . . C30458 WUBlastX LINE_L1-Tx1 5579 5905 57 + . . C30458 GLEAN promoter 6011 7010 1 - . ID=CGI_10000625; C30458 WUBlastX LINE_L1-Tx1 6104 7870 121 - . . C30458 WUBlastX LINE_L1-Tx1 6386 7870 312 - . . C30460 GLEAN mRNA 1208 1918 0.531565 - . ID=CGI_10000624; C30460 GLEAN promoter 1919 2918 0.531565 - . ID=CGI_10000624; C30476 GLEAN mRNA 1485 3569 1 - . ID=CGI_10000627; C30476 GLEAN promoter 3570 4569 1 - . ID=CGI_10000627; C30476 GLEAN promoter 4329 5328 1 + . ID=CGI_10000628; C30476 GLEAN mRNA 5329 6146 1 + . ID=CGI_10000628; C30500 TRF Tandem_Repeat 1747 1786 64 + . . C30500 GLEAN mRNA 2155 6921 0.993024 - . ID=CGI_10000629; C30500 TRF Tandem_Repeat 2693 3604 1208 + . . C30500 WUBlastX DNA_IS4EU 6631 7026 79 - . . C30500 GLEAN promoter 6922 7921 0.993024 - . ID=CGI_10000629; C30504 GLEAN promoter 1 144 1 + . ID=CGI_10000630; C30504 GLEAN mRNA 145 3526 1 + . ID=CGI_10000630; C30504 WUBlastX LINE_RTE-X 4493 5710 356 - . . C30504 WUBlastX LINE_L2 5258 5803 58 - . . C30506 GLEAN promoter 4608 5607 1 + . ID=CGI_10000631; C30506 GLEAN mRNA 5608 7229 1 + . ID=CGI_10000631; C30514 WUBlastX DNA_Crypton 1533 2249 90 - . . C30514 WUBlastX DNA_Crypton 1647 2444 60 - . . C30526 WUBlastX DNA_TcMar-Tc2 1439 2503 822 - . . C30526 WUBlastX DNA_TcMar-Tc2 2452 2679 91 - . . C30526 WUBlastX DNA_TcMar-Tc2 2452 2640 106 - . . C30526 WUBlastX LINE_RTE-BovB 6496 6678 80 - . . C30526 WUBlastX LINE_RTE-BovB 6657 6920 85 - . . C30534 WUBlastX LTR_Gypsy 4526 4585 20 - . . C30534 WUBlastX LTR_Copia 5075 7339 1343 - . . C30534 WUBlastX LTR_Copia 6770 7441 145 - . . C30550 TRF Tandem_Repeat 4262 4290 58 + . . C30550 WUBlastX LINE_Rex-Babar 5390 5611 47 - . . C30550 WUBlastX LINE_Rex-Babar 5580 5699 46 - . . C30550 TRF Tandem_Repeat 6688 6712 50 + . . C30566 GLEAN promoter 1 898 1 + . ID=CGI_10000635; C30566 GLEAN mRNA 899 7193 1 + . ID=CGI_10000635; C30570 GLEAN mRNA 100 984 0.648526 - . ID=CGI_10000636; C30570 GLEAN promoter 985 1984 0.648526 - . ID=CGI_10000636; C30570 WUBlastX LINE_L1 5246 5959 40 + . . C30570 WUBlastX LINE_L2 5366 6073 154 + . . C30570 WUBlastX LINE_L1 5489 6088 267 + . . C30570 WUBlastX LINE_L2 5645 6169 120 + . . C30570 WUBlastX LINE_RTE-X 6248 8041 315 + . . C30582 WUBlastX LINE_RTE-BovB 2637 2777 50 + . . C30582 WUBlastX LINE_RTE-BovB 2687 3166 176 + . . C30582 WUBlastX LINE_RTE-BovB 2780 3142 257 + . . C30582 TRF Tandem_Repeat 7001 7064 128 + . . C30582 TRF Tandem_Repeat 7064 7094 62 + . . C30584 GLEAN promoter 1281 2280 1 + . ID=CGI_10000639; C30584 GLEAN mRNA 2281 7150 1 + . ID=CGI_10000639; C30592 WUBlastX LINE_L2 3902 4321 129 + . . C30592 WUBlastX LINE_L2 3950 4408 66 + . . C30608 WUBlastX LTR_Gypsy 371 715 37 + . . C30608 WUBlastX LTR_Gypsy 503 2050 699 + . . C30608 WUBlastX LTR_Gypsy 2073 2480 372 + . . C30608 WUBlastX LTR_Gypsy-Cigr 2118 2594 263 + . . C30608 WUBlastX LTR_Gypsy 2483 2956 144 + . . C30608 WUBlastX LTR_Gypsy 2838 3605 248 + . . C30608 WUBlastX LTR_Gypsy 2961 4019 685 + . . C30608 WUBlastX LTR_Copia 4422 4523 20 + . . C30608 WUBlastX LINE_L1-Tx1 5718 5981 99 + . . C30608 WUBlastX LINE_L1-Tx1 5718 6086 91 + . . C30608 WUBlastX LINE_L1-Tx1 5727 5942 126 + . . C30608 TRF Tandem_Repeat 7314 7505 158 + . . C30608 TRF Tandem_Repeat 7314 7441 61 + . . C30608 TRF Tandem_Repeat 7321 7505 68 + . . C30620 GLEAN promoter 626 1625 0.999994 + . ID=CGI_10000644; C30620 GLEAN mRNA 1626 3068 0.999994 + . ID=CGI_10000644; C30632 GLEAN promoter 1 804 0.999997 + . ID=CGI_10000645; C30632 WUBlastX DNA_Zator 687 845 47 + . . C30632 GLEAN mRNA 805 4646 0.999997 + . ID=CGI_10000645; C30632 TRF Tandem_Repeat 2289 2340 104 + . . C30662 WUBlastX LINE_CR1 767 829 24 - . . C30662 WUBlastX LINE_Rex-Babar 996 1103 23 - . . C30662 WUBlastX LINE_L2 1911 2984 382 - . . C30662 WUBlastX LINE_CR1-L2 3697 4386 165 - . . C30662 WUBlastX LINE_L2 3706 4233 186 - . . C30662 TRF Tandem_Repeat 5799 5873 150 + . . C30668 TRF Tandem_Repeat 837 895 118 + . . C30668 TRF Tandem_Repeat 3661 4039 117 + . . C30668 TRF Tandem_Repeat 3845 4038 201 + . . C30668 TRF Tandem_Repeat 4040 4082 68 + . . C30668 TRF Tandem_Repeat 4895 4949 78 + . . C30668 GLEAN promoter 5585 6584 0.481188 + . ID=CGI_10000655; C30668 GLEAN mRNA 6585 6953 0.481188 + . ID=CGI_10000655; C30668 WUBlastX LINE_Penelope 6887 7204 66 + . . C30668 WUBlastX LINE_Penelope 6971 7801 220 + . . C30668 WUBlastX LINE_Penelope 7364 7888 64 + . . C30686 GLEAN mRNA 1381 1581 0.999372 - . ID=CGI_10000656; C30686 GLEAN promoter 1582 2581 0.999372 - . ID=CGI_10000656; C30694 TRF Tandem_Repeat 3443 3495 106 + . . C30694 GLEAN mRNA 5782 6153 1 - . ID=CGI_10000657; C30694 WUBlastX LTR_Copia 6009 6080 24 - . . C30694 GLEAN promoter 6154 7153 1 - . ID=CGI_10000657; C30694 WUBlastX LTR_Gypsy 6163 6483 21 - . . C30694 WUBlastX LTR_Gypsy 6553 7641 256 - . . C30694 WUBlastX LTR_Gypsy-Cigr 6790 8247 955 - . . C30708 WUBlastX LINE_L1-Tx1 3 1394 252 + . . C30708 TRF Tandem_Repeat 1930 1969 80 + . . C30708 GLEAN mRNA 2206 8142 1 - . ID=CGI_10000661; C30708 GLEAN promoter 8143 8266 1 - . ID=CGI_10000661; C30728 WUBlastX LTR_Gypsy 6821 7336 152 - . . C30728 WUBlastX LTR_Gypsy 7000 7710 245 - . . C30728 WUBlastX LTR_Gypsy 7060 7842 53 - . . C30752 WUBlastX LINE_RTE-X 8 178 46 - . . C30752 WUBlastX LINE_RTE-X 47 178 69 - . . C30752 WUBlastX LINE_L1-Tx1 71 199 24 - . . C30752 WUBlastX LINE_CR1 486 1241 156 - . . C30752 WUBlastX LINE_RTE-X 669 1229 272 - . . C30752 WUBlastX LINE_RTE-X 669 1595 249 - . . C30752 WUBlastX LINE_RTE-X 1973 2188 63 - . . C30752 WUBlastX LINE_RTE-X 2215 2331 71 - . . C30752 WUBlastX LINE_RTE-X 2337 2768 92 - . . C30752 WUBlastX LINE_L1 2812 3054 153 - . . C30752 WUBlastX LINE_L2 3039 3443 101 - . . C30752 WUBlastX LINE_CR1-L2 6345 6509 21 + . . C30752 WUBlastX LINE_L2 6500 6775 62 + . . C30752 WUBlastX LINE_CR1-L2 6771 6854 28 + . . C30752 TRF Tandem_Repeat 7132 7265 225 + . . C30754 GLEAN mRNA 4339 4605 0.557842 - . ID=CGI_10000663; C30754 GLEAN promoter 4606 5605 0.557842 - . ID=CGI_10000663; C30754 GLEAN mRNA 4978 5196 0.998387 - . ID=CGI_10000664; C30754 GLEAN promoter 5197 6196 0.998387 - . ID=CGI_10000664; C30754 GLEAN mRNA 5221 5742 0.999995 - . ID=CGI_10000665; C30754 GLEAN promoter 5743 6742 0.999995 - . ID=CGI_10000665; C30768 WUBlastX LTR_Pao 1 183 144 + . . C30768 WUBlastX DNA_IS4EU 6735 6776 21 + . . C30768 WUBlastX DNA_IS4EU 7108 7248 23 + . . C30768 WUBlastX DNA_IS4EU 7652 7750 26 + . . C30768 WUBlastX DNA_IS4EU 7820 7927 45 + . . C30768 WUBlastX DNA_IS4EU 8143 8328 53 + . . C30770 GLEAN mRNA 423 5739 1 - . ID=CGI_10000667; C30770 GLEAN promoter 5740 6739 1 - . ID=CGI_10000667; C30770 GLEAN mRNA 7458 8025 1 - . ID=CGI_10000668; C30770 GLEAN promoter 8026 8345 1 - . ID=CGI_10000668; C30792 TRF Tandem_Repeat 111 164 83 + . . C30792 TRF Tandem_Repeat 334 1189 1262 + . . C30792 TRF Tandem_Repeat 2420 2532 84 + . . C30792 TRF Tandem_Repeat 4145 4451 93 + . . C30792 TRF Tandem_Repeat 4276 4451 115 + . . C30792 WUBlastX DNA_TcMar-Tc1 6173 6910 322 - . . C30792 WUBlastX DNA_TcMar-Tc1 6921 7187 84 - . . C30792 WUBlastX DNA_TcMar-Tc1 6921 7235 80 - . . C30804 GLEAN mRNA 2735 4935 0.937845 - . ID=CGI_10000674; C30804 GLEAN promoter 4936 5935 0.937845 - . ID=CGI_10000674; C30806 WUBlastX DNA_TcMar-Tc1 5257 5736 105 + . . C30806 WUBlastX DNA_TcMar-Tc1 5446 5832 116 + . . C30806 WUBlastX DNA_TcMar-Tc1 5742 5954 117 + . . C30816 GLEAN mRNA 165 6390 1 - . ID=CGI_10000677; C30816 GLEAN promoter 6391 7390 1 - . ID=CGI_10000677; C30816 WUBlastX LINE_RTE-X 6848 7147 160 + . . C30816 WUBlastX LINE_RTE-X 7150 7254 33 + . . C30816 WUBlastX LINE_RTE-X 7156 7239 37 + . . C30816 WUBlastX LINE_RTE-X 7266 7523 53 + . . C30816 WUBlastX LINE_RTE-X 7597 7890 35 + . . C30816 WUBlastX LINE_RTE-X 7645 7971 35 + . . C30816 WUBlastX LINE_RTE-X 7690 7896 36 + . . C30820 WUBlastX DNA_Harbinger 927 1172 32 + . . C30820 WUBlastX DNA_Harbinger 1074 1178 41 + . . C30820 WUBlastX DNA_Harbinger 1192 1323 32 + . . C30820 WUBlastX DNA_Harbinger 1318 1449 73 + . . C30820 WUBlastX LINE_RTE-X 7930 8193 25 - . . C30820 WUBlastX LINE_RTE-X 8014 8358 26 - . . C30820 WUBlastX LINE_RTE-X 8014 8217 27 - . . C30848 WUBlastX DNA_hAT-Ac 169 216 20 - . . C30848 WUBlastX DNA_hAT-Ac 215 313 70 - . . C30848 WUBlastX LTR_Gypsy 1195 2517 987 + . . C30848 GLEAN promoter 5878 6877 1 + . ID=CGI_10000680; C30848 GLEAN mRNA 6878 7850 1 + . ID=CGI_10000680; C30848 TRF Tandem_Repeat 7584 7622 78 + . . C30852 GLEAN promoter 480 1479 1 + . ID=CGI_10000681; C30852 GLEAN promoter 1025 2024 1 + . ID=CGI_10000682; C30852 GLEAN mRNA 1480 1758 1 + . ID=CGI_10000681; C30852 GLEAN mRNA 2025 3555 1 + . ID=CGI_10000682; C30852 GLEAN promoter 2795 3794 1 + . ID=CGI_10000683; C30852 GLEAN mRNA 3795 7209 1 + . ID=CGI_10000683; C30862 WUBlastX DNA_hAT-hATw 1126 1239 25 + . . C30862 WUBlastX DNA_hAT-hATw 1387 3246 602 + . . C30862 WUBlastX LTR_Ngaro 3980 4216 84 - . . C30864 TRF Tandem_Repeat 2089 2125 65 + . . C30864 WUBlastX LINE_L1-Tx1 3962 4228 39 + . . C30864 WUBlastX LINE_L1 3962 4183 63 + . . C30864 WUBlastX LINE_L1-Tx1 4224 4346 21 + . . C30864 WUBlastX LINE_L1-Tx1 4324 4572 71 + . . C30864 WUBlastX LINE_L1-Tx1 4396 4560 76 + . . C30864 WUBlastX LINE_L1 4396 4638 40 + . . C30864 WUBlastX LINE_L1-Tx1 4432 4581 79 + . . C30870 WUBlastX DNA_TcMar-Tc2 7879 8391 399 + . . C30872 WUBlastX LTR_Gypsy 2 541 132 - . . C30872 WUBlastX LTR_Gypsy 726 1607 28 - . . C30872 WUBlastX LTR_Gypsy 990 1610 57 - . . C30872 WUBlastX LTR_Gypsy 1095 1604 146 - . . C30872 TRF Tandem_Repeat 3174 4033 746 + . . C30872 WUBlastX DNA_TcMar-Marin 4463 4636 114 - . . C30872 WUBlastX DNA_IS4EU 6203 6502 63 - . . C30898 WUBlastX DNA_Crypton 1085 1810 165 - . . C30898 WUBlastX DNA_Crypton 1831 2133 50 - . . C30898 TRF Tandem_Repeat 7297 7348 104 + . . C30954 GLEAN mRNA 4356 5969 0.593391 - . ID=CGI_10000688; C30954 GLEAN promoter 5970 6969 0.593391 - . ID=CGI_10000688; C30956 GLEAN promoter 3239 4238 1 + . ID=CGI_10000689; C30956 GLEAN mRNA 4239 7885 1 + . ID=CGI_10000689; C30958 GLEAN mRNA 486 6204 0.650923 - . ID=CGI_10000690; C30958 GLEAN promoter 6205 7204 0.650923 - . ID=CGI_10000690; C30974 GLEAN mRNA 1043 2707 1 - . ID=CGI_10000692; C30974 GLEAN promoter 2708 3707 1 - . ID=CGI_10000692; C30988 TRF Tandem_Repeat 912 995 114 + . . C30988 WUBlastX LINE_L2 5569 6528 82 + . . C30988 WUBlastX LINE_CR1-L2 5719 6528 206 + . . C30988 WUBlastX LINE_CR1-L2 6501 6992 102 + . . C30988 WUBlastX LINE_LOA 6933 7025 30 + . . C30988 WUBlastX LINE_CR1 7030 7350 64 + . . C30988 WUBlastX LINE_L2 7090 7692 263 + . . C30994 GLEAN promoter 269 1268 0.999993 + . ID=CGI_10000693; C30994 GLEAN mRNA 1269 8621 0.999993 + . ID=CGI_10000693; C30998 WUBlastX LINE_L1-Tx1 1 1887 1039 - . . C31012 TRF Tandem_Repeat 1 32 64 + . . C31012 TRF Tandem_Repeat 2255 2360 88 + . . C31012 WUBlastX LTR_Gypsy 3055 6810 2059 - . . C31012 TRF Tandem_Repeat 7083 7122 71 + . . C31012 WUBlastX LINE_L1-Tx1 7237 8697 292 - . . C31020 GLEAN mRNA 1419 6346 0.702384 - . ID=CGI_10000695; C31020 GLEAN promoter 6347 7346 0.702384 - . ID=CGI_10000695; C31056 GLEAN mRNA 19 6783 0.999993 - . ID=CGI_10000696; C31056 GLEAN promoter 6784 7783 0.999993 - . ID=CGI_10000696; C31060 GLEAN mRNA 317 6452 1 - . ID=CGI_10000697; C31060 GLEAN promoter 6453 7452 1 - . ID=CGI_10000697; C31062 WUBlastX DNA_TcMar-Tc2 4153 4365 43 + . . C31062 WUBlastX DNA_TcMar-Tc2 4186 4545 93 + . . C31062 GLEAN mRNA 6786 8601 0.999949 - . ID=CGI_10000698; C31062 GLEAN promoter 8602 8776 0.999949 - . ID=CGI_10000698; C31070 WUBlastX DNA_Maverick 19 243 159 - . . C31070 WUBlastX DNA_Maverick 46 324 139 - . . C31070 WUBlastX DNA_Maverick 3071 3943 383 - . . C31070 WUBlastX DNA_Maverick 3680 4015 119 - . . C31070 GLEAN mRNA 4205 5578 0.992577 - . ID=CGI_10000699; C31070 WUBlastX DNA_IS4EU 4265 4654 69 - . . C31070 WUBlastX DNA_IS4EU 4331 5209 31 - . . C31070 GLEAN promoter 5579 6578 0.992577 - . ID=CGI_10000699; C31096 GLEAN promoter 1752 2751 0.555837 + . ID=CGI_10000704; C31096 GLEAN mRNA 2752 3114 0.555837 + . ID=CGI_10000704; C31096 GLEAN mRNA 4535 6700 0.999978 - . ID=CGI_10000705; C31096 WUBlastX LINE_RTE-X 4637 5020 84 - . . C31096 WUBlastX LTR_DIRS 5468 5737 29 - . . C31096 WUBlastX LTR_Ngaro 5513 5776 151 - . . C31096 WUBlastX LTR_Ngaro 5737 6378 469 - . . C31096 WUBlastX LTR_DIRS 5782 6486 28 - . . C31096 WUBlastX LTR_Ngaro 6578 7393 156 - . . C31096 WUBlastX LTR_Ngaro 6632 7126 210 - . . C31096 GLEAN promoter 6701 7700 0.999978 - . ID=CGI_10000705; C31106 GLEAN mRNA 408 6273 0.651134 - . ID=CGI_10000706; C31106 GLEAN promoter 6274 7273 0.651134 - . ID=CGI_10000706; C31130 GLEAN mRNA 1615 7443 0.999998 - . ID=CGI_10000707; C31130 WUBlastX LINE_RTE-BovB 5984 6106 51 + . . C31130 WUBlastX LINE_RTE-BovB 6126 6275 44 + . . C31130 GLEAN promoter 7444 8443 0.999998 - . ID=CGI_10000707; C31130 TRF Tandem_Repeat 8142 8355 65 + . . C31132 GLEAN mRNA 1222 3029 1 - . ID=CGI_10000708; C31132 GLEAN promoter 3030 4029 1 - . ID=CGI_10000708; C31132 TRF Tandem_Repeat 4936 5002 55 + . . C31132 WUBlastX LINE_CR1 6938 7549 35 + . . C31132 WUBlastX LINE_L2 7061 8899 773 + . . C31144 GLEAN promoter 921 1920 0.999068 + . ID=CGI_10000709; C31144 GLEAN mRNA 1921 3009 0.999068 + . ID=CGI_10000709; C31144 TRF Tandem_Repeat 4978 5026 62 + . . C31144 TRF Tandem_Repeat 6588 6639 50 + . . C31144 TRF Tandem_Repeat 6686 6812 73 + . . C31144 WUBlastX LTR_Gypsy 7433 7534 31 - . . C31144 WUBlastX LTR_Gypsy 7520 8725 416 - . . C31144 WUBlastX LTR_Gypsy 7802 8908 561 - . . C31144 WUBlastX LTR_Gypsy 7811 8725 758 - . . C31156 WUBlastX DNA_hAT 107 535 61 - . . C31156 WUBlastX DNA_hAT-Ac 278 1606 612 - . . C31156 WUBlastX DNA_hAT-Restles 1385 1672 53 - . . C31156 WUBlastX DNA_hAT-Ac 1651 1806 89 - . . C31156 WUBlastX DNA_hAT-Ac 1684 1908 80 - . . C31156 WUBlastX DNA_hAT 2280 2453 26 - . . C31156 WUBlastX DNA_hAT-Ac 2313 2459 57 - . . C31156 WUBlastX DNA_hAT-Ac 2316 2495 34 - . . C31156 WUBlastX LTR_Gypsy 7717 8712 399 - . . C31156 WUBlastX LTR_Gypsy 8667 8864 148 - . . C31156 WUBlastX LTR_Gypsy 8715 8891 78 - . . C31202 WUBlastX LINE_L2 427 924 167 - . . C31202 WUBlastX LTR_Ngaro 1063 1167 86 + . . C31202 WUBlastX LTR_Ngaro 1166 1663 273 + . . C31202 WUBlastX LTR_Ngaro 1253 1645 281 + . . C31202 TRF Tandem_Repeat 2672 2714 59 + . . C31202 TRF Tandem_Repeat 2898 2939 84 + . . C31246 WUBlastX LTR_Gypsy-Troyk 2523 2591 36 + . . C31246 WUBlastX LTR_Gypsy-Troyk 2608 2886 239 + . . C31246 WUBlastX LTR_Gypsy-Troyk 2897 3145 112 + . . C31246 WUBlastX LTR_Gypsy-Troyk 3018 3191 21 + . . C31246 WUBlastX LTR_Gypsy-Troyk 3195 3326 47 + . . C31246 WUBlastX LTR_Gypsy-Troyk 3386 3637 153 + . . C31246 TRF Tandem_Repeat 4840 4893 81 + . . C31246 WUBlastX LINE_L1-Tx1 5197 5265 23 + . . C31246 WUBlastX LINE_L1-Tx1 5312 5926 76 + . . C31246 WUBlastX LTR_Ngaro 7359 7979 146 - . . C31246 WUBlastX LTR_Ngaro 8204 8326 51 - . . C31246 WUBlastX LTR_Ngaro 8231 8326 56 - . . C31246 WUBlastX LTR_Ngaro 8335 9069 318 - . . C31246 WUBlastX LTR_Ngaro 8991 9104 27 - . . C31256 GLEAN promoter 2716 3715 0.999996 + . ID=CGI_10000717; C31256 GLEAN mRNA 3716 4656 0.999996 + . ID=CGI_10000717; C31256 GLEAN promoter 3931 4930 0.988651 + . ID=CGI_10000718; C31256 GLEAN mRNA 4931 5962 0.988651 + . ID=CGI_10000718; C31256 GLEAN mRNA 7994 8410 0.59015 - . ID=CGI_10000719; C31256 GLEAN promoter 8411 9134 0.59015 - . ID=CGI_10000719; C31260 GLEAN mRNA 411 8405 0.999999 - . ID=CGI_10000720; C31260 GLEAN promoter 8406 9137 0.999999 - . ID=CGI_10000720; C31270 WUBlastX RC_Helitron 6107 6463 75 - . . C31270 WUBlastX LINE_L2 7967 8992 245 + . . C31270 WUBlastX LINE_CR1-L2 8165 8992 300 + . . C31292 GLEAN mRNA 420 4327 0.999993 - . ID=CGI_10000730; C31292 GLEAN promoter 4328 5327 0.999993 - . ID=CGI_10000730; C31300 WUBlastX LTR_Gypsy 4919 4966 28 - . . C31300 WUBlastX LTR_Gypsy 4925 5059 22 - . . C31300 WUBlastX LTR_Gypsy 5039 5452 26 - . . C31300 WUBlastX LTR_Gypsy 5150 5461 58 - . . C31300 WUBlastX LTR_Gypsy 5279 5461 62 - . . C31300 WUBlastX LTR_Gypsy 5428 5670 93 - . . C31300 WUBlastX LTR_ERV1 5625 6128 137 - . . C31300 WUBlastX LTR_Gypsy 5676 6086 390 - . . C31300 WUBlastX LTR_Gypsy 6113 7081 592 - . . C31300 WUBlastX LTR_Gypsy 7050 7187 46 - . . C31300 WUBlastX LTR_Gypsy 7104 7694 429 - . . C31300 WUBlastX LTR_Gypsy 7617 7736 21 - . . C31300 WUBlastX LTR_Gypsy-Cigr 7729 8163 270 - . . C31300 WUBlastX LTR_Gypsy 7729 8472 24 - . . C31300 WUBlastX LTR_Gypsy-Cigr 7729 8283 245 - . . C31300 WUBlastX LTR_Gypsy 8590 8643 26 - . . C31300 WUBlastX LTR_Gypsy 8687 8911 30 - . . C31300 WUBlastX LTR_Gypsy 8690 8983 24 - . . C31304 WUBlastX LINE_RTE-BovB 8 244 87 + . . C31304 WUBlastX LINE_RTE-BovB 223 318 45 + . . C31304 TRF Tandem_Repeat 987 1016 60 + . . C31304 WUBlastX LTR_Copia 7481 8008 41 - . . C31304 WUBlastX LTR_Gypsy 7562 8416 144 - . . C31304 WUBlastX LTR_Pao 8099 8497 49 - . . C31304 TRF Tandem_Repeat 8556 8647 98 + . . C31322 GLEAN mRNA 2728 8628 1 - . ID=CGI_10000731; C31322 TRF Tandem_Repeat 7200 7242 50 + . . C31322 WUBlastX LINE_RTE-X 7288 8130 239 - . . C31322 WUBlastX LINE_RTE-X 7291 8349 161 - . . C31322 GLEAN promoter 8629 9266 1 - . ID=CGI_10000731; C31324 WUBlastX DNA_TcMar-Tc1 3733 4116 46 - . . C31324 WUBlastX DNA_TcMar-Tc1 3739 3993 86 - . . C31324 WUBlastX DNA_TcMar-Tc1 4479 4952 81 - . . C31324 WUBlastX DNA_TcMar-Tc1 4560 5168 78 - . . C31340 GLEAN mRNA 472 4908 0.648316 - . ID=CGI_10000735; C31340 GLEAN promoter 4909 5908 0.648316 - . ID=CGI_10000735; C31340 WUBlastX LTR_Gypsy 8531 9223 207 + . . C31346 GLEAN mRNA 344 1350 1 - . ID=CGI_10000736; C31346 GLEAN promoter 1351 2350 1 - . ID=CGI_10000736; C31346 WUBlastX DNA_TcMar-Marin 4229 4300 27 + . . C31346 WUBlastX DNA_TcMar-Marin 4229 4753 21 + . . C31346 WUBlastX DNA_TcMar-Marin 4465 4683 58 + . . C31346 WUBlastX DNA_TcMar-Marin 4546 4683 66 + . . C31346 WUBlastX DNA_TcMar-Marin 4546 4710 66 + . . C31346 TRF Tandem_Repeat 8804 8841 51 + . . C31366 GLEAN mRNA 393 6299 0.999547 - . ID=CGI_10000739; C31366 WUBlastX DNA_Academ 1807 2079 87 - . . C31366 WUBlastX DNA_Academ 4019 4114 32 + . . C31366 WUBlastX DNA_Academ 4143 4196 24 + . . C31366 WUBlastX LINE_L1-Tx1 5311 5805 46 + . . C31366 WUBlastX LINE_L1-Tx1 5311 5661 65 + . . C31366 TRF Tandem_Repeat 6114 6155 52 + . . C31366 GLEAN promoter 6300 7299 0.999547 - . ID=CGI_10000739; C31366 TRF Tandem_Repeat 9326 9359 59 + . . C31370 WUBlastX LTR_Gypsy 2477 3391 177 - . . C31370 WUBlastX LTR_Gypsy 2621 3868 499 - . . C31370 WUBlastX LTR_Gypsy 2924 4771 559 - . . C31370 WUBlastX LTR_Gypsy 4262 4876 356 - . . C31370 WUBlastX LTR_Gypsy 5137 5577 199 - . . C31370 WUBlastX LTR_Gypsy 5218 5769 319 - . . C31370 WUBlastX LTR_Gypsy 5254 5574 357 - . . C31370 WUBlastX LTR_Gypsy 5287 5898 232 - . . C31370 WUBlastX LINE_L2 5880 6134 106 + . . C31370 WUBlastX LINE_L2 6104 6592 358 + . . C31370 WUBlastX LTR_Gypsy 6999 8135 118 - . . C31370 WUBlastX LTR_Gypsy-Cigr 7620 8201 181 - . . C31386 WUBlastX LTR_Gypsy 7124 9346 1808 - . . C31386 WUBlastX LTR_Gypsy 9349 9390 21 - . . C31390 GLEAN promoter 1 615 0.840034 + . ID=CGI_10000743; C31390 GLEAN mRNA 616 3628 0.840034 + . ID=CGI_10000743; C31390 GLEAN mRNA 4007 8251 0.999991 - . ID=CGI_10000744; C31390 GLEAN promoter 8252 9251 0.999991 - . ID=CGI_10000744; C31396 WUBlastX LINE_L1 660 773 23 + . . C31396 WUBlastX LINE_L1-Tx1 1277 1819 134 + . . C31396 WUBlastX LINE_L1-Tx1 1286 1936 123 + . . C31396 TRF Tandem_Repeat 6230 6284 56 + . . C31396 TRF Tandem_Repeat 6233 6288 62 + . . C31396 TRF Tandem_Repeat 7251 8209 1088 + . . C31396 TRF Tandem_Repeat 8240 8324 143 + . . C31398 TRF Tandem_Repeat 4869 4931 101 + . . C31398 WUBlastX LTR_Gypsy 6868 7224 76 + . . C31398 WUBlastX LTR_Gypsy 7010 7144 87 + . . C31398 WUBlastX LTR_Gypsy 7013 7171 79 + . . C31400 WUBlastX LINE_CR1-L2 3831 4184 63 + . . C31400 TRF Tandem_Repeat 4774 4950 54 + . . C31400 TRF Tandem_Repeat 5942 6679 950 + . . C31400 TRF Tandem_Repeat 5942 6768 792 + . . C31410 GLEAN mRNA 1577 7454 0.990444 - . ID=CGI_10000745; C31410 GLEAN promoter 7455 8454 0.990444 - . ID=CGI_10000745; C31414 TRF Tandem_Repeat 138 183 58 + . . C31414 TRF Tandem_Repeat 2961 3190 146 + . . C31414 GLEAN promoter 4466 5465 0.561405 + . ID=CGI_10000746; C31414 GLEAN mRNA 5466 7672 0.561405 + . ID=CGI_10000746; C31414 WUBlastX LTR_Gypsy 6219 6866 61 + . . C31414 WUBlastX LTR_Copia 6720 6992 56 + . . C31442 GLEAN mRNA 1672 8783 0.713064 - . ID=CGI_10000749; C31442 GLEAN promoter 8784 9527 0.713064 - . ID=CGI_10000749; C31446 WUBlastX DNA_Crypton 3605 4225 71 + . . C31446 WUBlastX DNA_Crypton 4536 4940 73 + . . C31446 WUBlastX LTR_Ngaro 7331 7561 55 + . . C31458 GLEAN promoter 2878 3877 0.999821 + . ID=CGI_10000751; C31458 GLEAN mRNA 3878 6839 0.999821 + . ID=CGI_10000751; C31460 WUBlastX DNA_Kolobok 3436 3651 103 + . . C31466 TRF Tandem_Repeat 567 617 102 + . . C31466 GLEAN mRNA 3750 3980 1 - . ID=CGI_10000752; C31466 GLEAN promoter 3981 4980 1 - . ID=CGI_10000752; C31466 WUBlastX RC_Helitron 3993 4391 49 - . . C31466 GLEAN mRNA 5052 7001 1 - . ID=CGI_10000753; C31466 GLEAN promoter 7002 8001 1 - . ID=CGI_10000753; C31482 WUBlastX LINE_L1-Tx1 2849 3109 27 + . . C31482 TRF Tandem_Repeat 8720 8828 182 + . . C31488 GLEAN promoter 3162 4161 0.99956 + . ID=CGI_10000755; C31488 GLEAN mRNA 4162 6756 0.99956 + . ID=CGI_10000755; C31500 GLEAN mRNA 1609 6624 1 - . ID=CGI_10000756; C31500 GLEAN promoter 6625 7624 1 - . ID=CGI_10000756; C31510 GLEAN mRNA 3588 4773 0.91377 - . ID=CGI_10000757; C31510 GLEAN promoter 4774 5773 0.91377 - . ID=CGI_10000757; C31510 GLEAN promoter 5475 6474 0.999797 + . ID=CGI_10000758; C31510 GLEAN mRNA 6475 7785 0.999797 + . ID=CGI_10000758; C31510 WUBlastX DNA_Harbinger 6532 6846 60 + . . C31510 WUBlastX DNA_Harbinger 8257 9321 1044 - . . C31526 GLEAN mRNA 2311 9331 1 - . ID=CGI_10000761; C31526 GLEAN promoter 9332 9662 1 - . ID=CGI_10000761; C31542 WUBlastX LINE_RTE-X 1042 2076 450 - . . C31542 TRF Tandem_Repeat 3124 3157 68 + . . C31542 TRF Tandem_Repeat 3235 3285 93 + . . C31542 TRF Tandem_Repeat 6064 6107 88 + . . C31546 GLEAN mRNA 177 8610 0.699456 - . ID=CGI_10000766; C31546 GLEAN promoter 8611 9610 0.699456 - . ID=CGI_10000766; C31564 TRF Tandem_Repeat 1473 1546 127 + . . C31564 WUBlastX LINE_L1-Tx1 8434 9714 446 + . . C31572 GLEAN promoter 1 783 0.997651 + . ID=CGI_10000770; C31572 TRF Tandem_Repeat 1 70 133 + . . C31572 GLEAN mRNA 784 6245 0.997651 + . ID=CGI_10000770; C31572 TRF Tandem_Repeat 4851 4937 95 + . . C31572 TRF Tandem_Repeat 5033 5154 147 + . . C31572 WUBlastX LINE_RTE-X 7506 7988 65 + . . C31572 WUBlastX LINE_RTE-X 7602 8051 122 + . . C31572 WUBlastX LINE_RTE-X 7623 7991 123 + . . C31572 WUBlastX LINE_RTE-X 7683 7946 125 + . . C31574 WUBlastX LINE_L1-Tx1 3417 3719 51 - . . C31590 TRF Tandem_Repeat 2126 2169 61 + . . C31590 TRF Tandem_Repeat 2135 2182 69 + . . C31590 WUBlastX LINE_L1-Tx1 4436 4762 46 - . . C31590 TRF Tandem_Repeat 8562 8611 50 + . . C31590 TRF Tandem_Repeat 9623 9677 65 + . . C31590 TRF Tandem_Repeat 9626 9681 71 + . . C31630 GLEAN mRNA 154 4247 1 - . ID=CGI_10000772; C31630 GLEAN promoter 4248 5247 1 - . ID=CGI_10000772; C31668 GLEAN promoter 1 795 0.999445 + . ID=CGI_10000775; C31668 GLEAN mRNA 796 7816 0.999445 + . ID=CGI_10000775; C31694 WUBlastX LINE_L1-Tx1 2 415 271 + . . C31694 WUBlastX LINE_L1-Tx1 2 547 196 + . . C31694 WUBlastX LINE_RTE-X 403 588 20 + . . C31694 TRF Tandem_Repeat 1842 1877 72 + . . C31694 GLEAN promoter 2285 3284 1 + . ID=CGI_10000779; C31694 GLEAN mRNA 3285 9162 1 + . ID=CGI_10000779; C31694 TRF Tandem_Repeat 9895 10035 203 + . . C31706 GLEAN mRNA 7450 8100 0.651134 - . ID=CGI_10000781; C31706 GLEAN promoter 8101 9100 0.651134 - . ID=CGI_10000781; C31714 GLEAN promoter 1248 2247 0.69447 + . ID=CGI_10000782; C31714 GLEAN mRNA 2248 2553 0.69447 + . ID=CGI_10000782; C31714 GLEAN promoter 5430 6429 1 + . ID=CGI_10000783; C31714 GLEAN mRNA 6430 7974 1 + . ID=CGI_10000783; C31724 WUBlastX LTR_Gypsy-Cigr 1751 1894 99 + . . C31724 WUBlastX LTR_Gypsy 1908 2000 26 + . . C31724 WUBlastX LTR_Gypsy-Cigr 2516 4255 644 - . . C31724 WUBlastX LTR_Gypsy 2768 4060 803 - . . C31724 WUBlastX LTR_Gypsy 4217 4441 162 - . . C31724 WUBlastX LTR_Gypsy 4286 4474 81 - . . C31724 WUBlastX LTR_Gypsy 4498 4539 23 - . . C31724 WUBlastX LTR_Gypsy 4511 5347 150 - . . C31724 WUBlastX LTR_Gypsy 4865 5443 30 - . . C31724 WUBlastX LTR_Gypsy 7503 8495 460 + . . C31724 WUBlastX LTR_Gypsy 8187 8555 38 + . . C31738 WUBlastX LTR_Ngaro 535 870 20 + . . C31738 WUBlastX LTR_Ngaro 733 822 47 + . . C31738 WUBlastX LTR_Ngaro 887 991 49 + . . C31738 WUBlastX LTR_Ngaro 902 1072 25 + . . C31738 TRF Tandem_Repeat 2091 2128 58 + . . C31738 WUBlastX LINE_L1-Tx1 2163 4148 1019 + . . C31738 WUBlastX LINE_L1-Tx1 4001 4846 142 + . . C31738 WUBlastX LINE_L1-Tx1 4340 4831 169 + . . C31738 WUBlastX LINE_L1-Tx1 4849 5109 21 + . . C31738 WUBlastX LINE_L1-Tx1 5127 5897 165 + . . C31738 WUBlastX DNA_Sola 9361 10125 142 - . . C31746 GLEAN promoter 3304 4303 1 + . ID=CGI_10000788; C31746 GLEAN mRNA 4304 6781 1 + . ID=CGI_10000788; C31762 WUBlastX LINE_L2 2562 2846 92 - . . C31762 WUBlastX LINE_L2 2607 2822 144 - . . C31762 WUBlastX LINE_Rex-Babar 2655 2858 93 - . . C31762 WUBlastX LINE_L1-Tx1 4316 5074 42 - . . C31762 WUBlastX LINE_L1-Tx1 4325 4936 66 - . . C31762 WUBlastX LINE_L1-Tx1 5106 6782 963 - . . C31762 WUBlastX LINE_L1-Tx1 6767 7456 316 - . . C31762 WUBlastX LINE_L1-Tx1 7441 7791 195 - . . C31762 WUBlastX LINE_L1 7796 8083 77 - . . C31762 WUBlastX LINE_L1-Tx1 7802 8032 138 - . . C31762 WUBlastX LINE_I 8368 8430 24 + . . C31762 WUBlastX LINE_CR1 8383 8430 30 + . . C31762 WUBlastX LINE_CR1 8438 8611 60 + . . C31762 WUBlastX LINE_CR1 8625 10172 1009 + . . C31778 GLEAN mRNA 1065 7400 0.937847 - . ID=CGI_10000793; C31778 GLEAN promoter 7401 8400 0.937847 - . ID=CGI_10000793; C31806 GLEAN promoter 1 446 0.412771 + . ID=CGI_10000794; C31806 GLEAN mRNA 447 1355 0.412771 + . ID=CGI_10000794; C31808 GLEAN mRNA 1953 2852 1 - . ID=CGI_10000795; C31808 GLEAN promoter 2853 3852 1 - . ID=CGI_10000795; C31838 GLEAN mRNA 2367 2594 0.999984 - . ID=CGI_10000806; C31838 GLEAN promoter 2595 3594 0.999984 - . ID=CGI_10000806; C31838 GLEAN promoter 3827 4826 0.999394 + . ID=CGI_10000807; C31838 GLEAN mRNA 4827 10097 0.999394 + . ID=CGI_10000807; C31846 WUBlastX LINE_L1-Tx1 17 151 28 - . . C31846 WUBlastX LINE_L1 53 139 38 - . . C31846 WUBlastX LINE_L1-Tx1 142 663 79 - . . C31846 WUBlastX LINE_L1-Tx1 256 693 98 - . . C31846 WUBlastX LINE_L1-Tx1 259 627 163 - . . C31846 WUBlastX LINE_L1-Tx1 740 907 36 - . . C31846 WUBlastX LINE_L1-Tx1 767 949 23 - . . C31846 WUBlastX LINE_L1 1074 1160 21 - . . C31882 GLEAN promoter 63 1062 0.999547 + . ID=CGI_10000808; C31882 GLEAN mRNA 1063 2098 0.999547 + . ID=CGI_10000808; C31882 GLEAN mRNA 4256 5071 0.73268 - . ID=CGI_10000809; C31882 GLEAN promoter 5072 6071 0.73268 - . ID=CGI_10000809; C31884 WUBlastX LTR_Gypsy 43 1023 285 - . . C31884 WUBlastX LTR_Gypsy-Cigr 1098 1667 110 - . . C31884 WUBlastX LTR_Gypsy-Cigr 1684 2070 50 - . . C31884 WUBlastX LTR_Gypsy 1684 1941 84 - . . C31896 GLEAN mRNA 4596 5261 0.654722 - . ID=CGI_10000811; C31896 GLEAN promoter 5262 6261 0.654722 - . ID=CGI_10000811; C31896 GLEAN mRNA 7783 8707 0.999415 - . ID=CGI_10000812; C31896 GLEAN promoter 8708 9707 0.999415 - . ID=CGI_10000812; C31902 GLEAN mRNA 602 1836 1 - . ID=CGI_10000813; C31902 GLEAN promoter 1837 2836 1 - . ID=CGI_10000813; C31902 TRF Tandem_Repeat 2741 2796 112 + . . C31902 TRF Tandem_Repeat 3911 3942 64 + . . C31902 WUBlastX LTR_DIRS 8098 8592 203 - . . C31902 WUBlastX LTR_DIRS 8625 8861 100 - . . C31902 WUBlastX LINE_RTE-X 9251 10423 356 - . . C31910 WUBlastX DNA_TcMar-Tc2 3591 3893 56 - . . C31910 WUBlastX DNA_TcMar-Tc2 3723 3872 89 - . . C31910 WUBlastX DNA_TcMar-Tc2 3883 4068 87 - . . C31910 WUBlastX DNA_TcMar-Tc2 4076 4141 48 - . . C31910 WUBlastX DNA_TcMar-Tc2 4128 4259 58 - . . C31910 GLEAN mRNA 5235 9075 0.998023 - . ID=CGI_10000814; C31910 WUBlastX DNA_TcMar-Tc2 7876 8388 358 - . . C31910 GLEAN promoter 9076 10075 0.998023 - . ID=CGI_10000814; C31910 WUBlastX LTR_DIRS 9512 10396 388 - . . C31912 WUBlastX LINE_RTE-X 1 1296 307 - . . C31912 WUBlastX LINE_RTE-X 1 891 325 - . . C31912 TRF Tandem_Repeat 4475 4531 98 + . . C31912 TRF Tandem_Repeat 7487 7539 106 + . . C31912 TRF Tandem_Repeat 7539 7596 116 + . . C31912 TRF Tandem_Repeat 9557 9584 56 + . . C31940 GLEAN promoter 2865 3864 0.999372 + . ID=CGI_10000815; C31940 GLEAN mRNA 3865 4491 0.999372 + . ID=CGI_10000815; C31964 GLEAN mRNA 1000 7565 0.999909 - . ID=CGI_10000818; C31964 GLEAN promoter 7566 8565 0.999909 - . ID=CGI_10000818; C31978 WUBlastX LTR_Gypsy 9 425 183 + . . C31978 WUBlastX LTR_Gypsy-Cigr 532 669 43 + . . C31978 TRF Tandem_Repeat 2030 2072 86 + . . C31978 WUBlastX RC_Helitron 4113 4226 22 + . . C31978 WUBlastX RC_Helitron 4167 4226 28 + . . C31978 WUBlastX RC_Helitron 4284 4736 274 + . . C31978 WUBlastX RC_Helitron 4359 4808 140 + . . C31978 WUBlastX RC_Helitron 4900 6372 1111 + . . C31978 TRF Tandem_Repeat 6482 6526 54 + . . C31978 WUBlastX RC_Helitron 6790 7218 106 + . . C31978 WUBlastX RC_Helitron 6790 7098 117 + . . C31978 WUBlastX RC_Helitron 7226 7702 91 + . . C31978 WUBlastX RC_Helitron 7651 7776 84 + . . C31978 WUBlastX RC_Helitron 7794 8171 191 + . . C31978 WUBlastX RC_Helitron 7812 8123 213 + . . C31978 WUBlastX RC_Helitron 8119 8787 166 + . . C31978 WUBlastX RC_Helitron 8233 8904 34 + . . C31982 WUBlastX LTR_Ngaro 8221 8838 181 + . . C31982 WUBlastX LTR_Ngaro 8846 9061 71 + . . C31982 WUBlastX LTR_Ngaro 8885 9055 72 + . . C31982 WUBlastX LTR_Ngaro 9036 9143 34 + . . C31982 WUBlastX LTR_Ngaro 9066 9128 57 + . . C31982 TRF Tandem_Repeat 10497 10609 199 + . . C31986 GLEAN mRNA 1778 8097 0.529656 - . ID=CGI_10000821; C31986 GLEAN promoter 8098 9097 0.529656 - . ID=CGI_10000821; C31988 WUBlastX LINE_L1-Tx1 6 2378 1182 - . . C31988 GLEAN promoter 1912 2911 0.99999 + . ID=CGI_10000822; C31988 WUBlastX LINE_L1 2522 2605 20 - . . C31988 GLEAN mRNA 2912 6824 0.99999 + . ID=CGI_10000822; C31988 TRF Tandem_Repeat 8655 9468 975 + . . C31996 GLEAN mRNA 5974 6881 0.999964 - . ID=CGI_10000823; C31996 GLEAN promoter 6882 7881 0.999964 - . ID=CGI_10000823; C31996 GLEAN mRNA 8928 9233 0.990797 - . ID=CGI_10000824; C31996 GLEAN promoter 9234 10233 0.990797 - . ID=CGI_10000824; C32006 GLEAN mRNA 10049 10628 0.36435 - . ID=CGI_10000825; C32006 GLEAN promoter 10629 10649 0.36435 - . ID=CGI_10000825; C32026 WUBlastX LTR_Pao 9591 10679 1102 - . . C32028 TRF Tandem_Repeat 6896 7070 224 + . . C32028 TRF Tandem_Repeat 6896 7070 224 + . . C32028 TRF Tandem_Repeat 7731 7883 180 + . . C32028 TRF Tandem_Repeat 7731 8001 289 + . . C32028 TRF Tandem_Repeat 7731 8023 284 + . . C32028 TRF Tandem_Repeat 7900 8022 165 + . . C32028 WUBlastX LINE_L1 9095 9328 20 + . . C32028 WUBlastX LINE_L1 9893 10678 176 + . . C32028 WUBlastX LINE_L1 10121 10660 215 + . . C32028 WUBlastX LINE_L1-Tx1 10235 10669 309 + . . C32040 GLEAN mRNA 721 1176 1 - . ID=CGI_10000829; C32040 GLEAN promoter 1177 2176 1 - . ID=CGI_10000829; C32054 WUBlastX LTR_Gypsy 41 454 65 + . . C32054 WUBlastX LTR_Gypsy 125 814 191 + . . C32054 WUBlastX LTR_Gypsy 822 2003 904 + . . C32054 WUBlastX LTR_Gypsy 963 2192 560 + . . C32054 WUBlastX LTR_Gypsy 2249 2296 23 + . . C32054 WUBlastX LTR_ERV1 2325 2456 23 + . . C32054 WUBlastX DNA_Kolobok-Hyd 2934 2993 25 + . . C32054 TRF Tandem_Repeat 7624 8000 466 + . . C32056 GLEAN promoter 1 633 0.999994 + . ID=CGI_10000836; C32056 GLEAN mRNA 634 5319 0.999994 + . ID=CGI_10000836; C32056 WUBlastX LINE_L1-Tx1 5757 5960 37 + . . C32056 WUBlastX LINE_L1 5802 5966 74 + . . C32056 WUBlastX LINE_L1-Tx1 5950 6537 84 + . . C32098 WUBlastX DNA_TcMar-Tc1 3801 4319 58 - . . C32098 WUBlastX DNA_TcMar-Tc1 3902 4531 212 - . . C32098 WUBlastX DNA_TcMar-Tc1 4579 4800 49 - . . C32098 TRF Tandem_Repeat 6080 6114 70 + . . C32106 WUBlastX DNA_Sola 1924 2031 68 - . . C32106 WUBlastX DNA_Sola 2136 2204 32 - . . C32106 WUBlastX DNA_Maverick 3235 3483 133 - . . C32106 WUBlastX LTR_Pao 8181 8954 649 - . . C32106 WUBlastX LTR_Pao 8202 9143 239 - . . C32106 WUBlastX LTR_Pao 8972 9238 35 - . . C32108 WUBlastX DNA_En-Spm 11 1447 296 + . . C32108 WUBlastX DNA_En-Spm 14 991 347 + . . C32108 TRF Tandem_Repeat 1997 2027 62 + . . C32110 GLEAN mRNA 1022 8135 0.499691 - . ID=CGI_10000840; C32110 GLEAN promoter 8136 9135 0.499691 - . ID=CGI_10000840; C32110 GLEAN mRNA 8247 8759 0.996431 - . ID=CGI_10000841; C32110 GLEAN promoter 8760 9759 0.996431 - . ID=CGI_10000841; C32122 GLEAN mRNA 1085 3963 0.996562 - . ID=CGI_10000842; C32122 GLEAN promoter 3964 4963 0.996562 - . ID=CGI_10000842; C32122 WUBlastX DNA_TcMar-Tc1 5982 6980 145 - . . C32136 GLEAN mRNA 177 5089 1 - . ID=CGI_10000844; C32136 GLEAN promoter 5090 6089 1 - . ID=CGI_10000844; C32150 WUBlastX LTR_Gypsy 2310 3014 21 + . . C32150 WUBlastX LTR_Gypsy 2442 3239 401 + . . C32150 WUBlastX LTR_Gypsy 2523 3383 122 + . . C32150 WUBlastX LTR_Gypsy 3521 7393 3204 + . . C32156 GLEAN promoter 1 454 1 + . ID=CGI_10000850; C32156 GLEAN mRNA 455 1672 1 + . ID=CGI_10000850; C32156 GLEAN promoter 1370 2369 0.999989 + . ID=CGI_10000851; C32156 GLEAN mRNA 2370 10885 0.999989 + . ID=CGI_10000851; C32176 TRF Tandem_Repeat 476 521 92 + . . C32176 GLEAN promoter 3830 4829 1 + . ID=CGI_10000854; C32176 GLEAN mRNA 4830 5267 1 + . ID=CGI_10000854; C32176 WUBlastX LTR_Pao 7762 7890 46 - . . C32176 WUBlastX LTR_Pao 7777 7932 26 - . . C32176 WUBlastX LTR_Pao 7786 7890 51 - . . C32176 WUBlastX LTR_Pao 7939 8616 69 - . . C32176 WUBlastX LTR_Pao 8080 8616 82 - . . C32176 WUBlastX LTR_Pao 9247 10239 90 - . . C32176 WUBlastX LTR_Pao 10434 10595 62 - . . C32196 GLEAN promoter 1 667 1 + . ID=CGI_10000859; C32196 GLEAN mRNA 668 10785 1 + . ID=CGI_10000859; C32216 GLEAN promoter 1248 2247 0.999212 + . ID=CGI_10000864; C32216 GLEAN mRNA 2248 3254 0.999212 + . ID=CGI_10000864; C32216 WUBlastX LINE_R1 3097 3249 22 + . . C32216 GLEAN promoter 3198 4197 0.78994 + . ID=CGI_10000865; C32216 TRF Tandem_Repeat 3340 3394 83 + . . C32216 GLEAN mRNA 4198 8009 0.78994 + . ID=CGI_10000865; C32216 WUBlastX DNA_hAT-hATw 6219 6458 22 + . . C32222 WUBlastX DNA_Kolobok-IS4 1236 1769 58 - . . C32222 WUBlastX DNA_IS4EU 1308 1655 67 - . . C32222 WUBlastX DNA_IS4EU 1368 1655 88 - . . C32222 GLEAN mRNA 1824 9853 0.999993 - . ID=CGI_10000866; C32222 WUBlastX DNA_Kolobok-IS4 2564 2845 74 - . . C32222 GLEAN promoter 9854 10853 0.999993 - . ID=CGI_10000866; C32222 TRF Tandem_Repeat 10816 11074 473 + . . C32224 GLEAN promoter 3424 4423 0.999897 + . ID=CGI_10000867; C32224 GLEAN mRNA 4424 11004 0.999897 + . ID=CGI_10000867; C32228 TRF Tandem_Repeat 1119 1164 92 + . . C32228 GLEAN mRNA 1780 2103 0.996819 - . ID=CGI_10000868; C32228 GLEAN promoter 2104 3103 0.996819 - . ID=CGI_10000868; C32228 WUBlastX LTR_Copia 3842 4366 122 + . . C32228 WUBlastX LTR_Copia 4345 5271 516 + . . C32228 WUBlastX LTR_Copia 6154 6255 24 + . . C32228 WUBlastX LTR_Copia 6251 6940 57 + . . C32228 WUBlastX LTR_Copia 6374 7396 610 + . . C32228 WUBlastX LTR_Copia 7457 7831 131 + . . C32228 WUBlastX LTR_Copia 7774 8463 436 + . . C32228 WUBlastX LTR_Copia 8406 9092 358 + . . C32240 TRF Tandem_Repeat 1447 1602 285 + . . C32240 GLEAN mRNA 3292 8608 0.589705 - . ID=CGI_10000869; C32240 TRF Tandem_Repeat 4211 4243 66 + . . C32240 GLEAN promoter 8609 9608 0.589705 - . ID=CGI_10000869; C32240 WUBlastX LTR_DIRS 9416 10744 468 + . . C32240 WUBlastX LTR_DIRS 10756 11010 92 + . . C32240 WUBlastX LTR_DIRS 10759 11064 79 + . . C32242 TRF Tandem_Repeat 2660 3041 180 + . . C32242 TRF Tandem_Repeat 2713 2956 123 + . . C32242 TRF Tandem_Repeat 4106 4345 154 + . . C32242 WUBlastX LTR_Ngaro 5337 5636 68 + . . C32246 GLEAN promoter 5971 6970 0.999999 + . ID=CGI_10000870; C32246 GLEAN mRNA 6971 8171 0.999999 + . ID=CGI_10000870; C32246 WUBlastX DNA_TcMar-Tc1 8600 9031 102 - . . C32246 WUBlastX DNA_TcMar-Tc1 8855 9070 50 - . . C32246 WUBlastX DNA_TcMar-Tc1 9067 9567 177 - . . C32246 WUBlastX DNA_TcMar-ISRm1 9415 9612 39 - . . C32264 GLEAN promoter 684 1683 0.649524 + . ID=CGI_10000871; C32264 GLEAN mRNA 1684 3021 0.649524 + . ID=CGI_10000871; C32270 WUBlastX DNA_Crypton 664 993 69 - . . C32270 WUBlastX DNA_Crypton 1364 1960 57 - . . C32270 WUBlastX LINE_I 3250 3612 40 - . . C32270 TRF Tandem_Repeat 9101 9132 55 + . . C32270 WUBlastX RC_Helitron 9547 9807 37 - . . C32270 GLEAN mRNA 9978 10379 1 - . ID=CGI_10000872; C32270 GLEAN promoter 10380 11214 1 - . ID=CGI_10000872; C32270 WUBlastX RC_Helitron 10827 11129 72 - . . C32270 WUBlastX RC_Helitron 10827 11201 63 - . . C32272 TRF Tandem_Repeat 2675 2738 65 + . . C32272 TRF Tandem_Repeat 4557 4597 82 + . . C32272 WUBlastX LINE_L1-Tx1 6271 6954 389 + . . C32272 WUBlastX LINE_L1-Tx1 6966 7637 226 + . . C32272 GLEAN mRNA 9967 10116 0.508443 - . ID=CGI_10000873; C32272 GLEAN promoter 10117 11116 0.508443 - . ID=CGI_10000873; C32272 WUBlastX LTR_Gypsy 10180 10668 293 - . . C32272 WUBlastX LTR_Gypsy 10662 11216 547 - . . C32276 GLEAN mRNA 2612 10129 0.932261 - . ID=CGI_10000874; C32276 WUBlastX LTR_ERV1 9395 9616 24 - . . C32276 GLEAN promoter 9430 10429 1 + . ID=CGI_10000875; C32276 WUBlastX LTR_ERV1 9446 9607 31 - . . C32276 WUBlastX LTR_ERV1 9452 9691 27 - . . C32276 GLEAN promoter 10130 11129 0.932261 - . ID=CGI_10000874; C32276 GLEAN mRNA 10430 10888 1 + . ID=CGI_10000875; C32278 GLEAN mRNA 1888 7157 0.999949 - . ID=CGI_10000876; C32278 GLEAN promoter 7158 8157 0.999949 - . ID=CGI_10000876; C32292 GLEAN promoter 277 1276 0.999998 + . ID=CGI_10000877; C32292 GLEAN mRNA 1277 8481 0.999998 + . ID=CGI_10000877; C32314 WUBlastX LTR_Gypsy 5 1243 862 + . . C32314 WUBlastX LTR_Gypsy 47 1459 806 + . . C32318 GLEAN promoter 1480 2479 0.999998 + . ID=CGI_10000883; C32318 GLEAN mRNA 2480 10983 0.999998 + . ID=CGI_10000883; C32318 WUBlastX LINE_L2 7512 7823 71 - . . C32318 WUBlastX LINE_L1 7548 8060 56 - . . C32318 WUBlastX LINE_L1 7548 7802 93 - . . C32318 WUBlastX LINE_L2 7551 7919 63 - . . C32328 GLEAN promoter 1863 2862 0.650882 + . ID=CGI_10000884; C32328 GLEAN mRNA 2863 10022 0.650882 + . ID=CGI_10000884; C32332 GLEAN mRNA 10572 11006 0.449946 - . ID=CGI_10000885; C32332 GLEAN promoter 11007 11372 0.449946 - . ID=CGI_10000885; C32390 GLEAN promoter 5523 6522 1 + . ID=CGI_10000887; C32390 GLEAN mRNA 6523 8870 1 + . ID=CGI_10000887; C32398 GLEAN promoter 1 559 1 + . ID=CGI_10000888; C32398 GLEAN mRNA 560 3105 1 + . ID=CGI_10000888; C32406 TRF Tandem_Repeat 610 1381 696 + . . C32406 TRF Tandem_Repeat 1427 1464 60 + . . C32406 GLEAN mRNA 4838 5519 0.65104 - . ID=CGI_10000889; C32406 GLEAN promoter 5520 6519 0.65104 - . ID=CGI_10000889; C32406 WUBlastX LINE_RTE-BovB 9554 9763 94 - . . C32406 WUBlastX LINE_RTE-BovB 9560 9805 85 - . . C32406 WUBlastX LINE_RTE-BovB 9807 9932 39 - . . C32406 TRF Tandem_Repeat 10136 10173 76 + . . C32406 TRF Tandem_Repeat 10285 11032 973 + . . C32424 GLEAN promoter 3530 4529 0.999924 + . ID=CGI_10000890; C32424 GLEAN mRNA 4530 11055 0.999924 + . ID=CGI_10000890; C32426 GLEAN promoter 415 1414 0.999676 + . ID=CGI_10000891; C32426 GLEAN mRNA 1415 5363 0.999676 + . ID=CGI_10000891; C32444 TRF Tandem_Repeat 54 212 300 + . . C32444 GLEAN mRNA 273 5854 1 - . ID=CGI_10000893; C32444 GLEAN promoter 1136 2135 0.999221 + . ID=CGI_10000894; C32444 GLEAN mRNA 2136 9566 0.999221 + . ID=CGI_10000894; C32444 GLEAN promoter 5855 6854 1 - . ID=CGI_10000893; C32444 WUBlastX DNA_Sola 6586 6924 73 + . . C32444 WUBlastX DNA_Sola 10035 11657 810 + . . C32468 GLEAN mRNA 7212 11157 0.557566 - . ID=CGI_10000897; C32468 GLEAN promoter 11158 11725 0.557566 - . ID=CGI_10000897; C32472 WUBlastX LINE_L1-Tx1 6 551 112 - . . C32472 WUBlastX LTR_Gypsy-Cigr 559 720 90 + . . C32472 WUBlastX LTR_Gypsy 559 693 121 + . . C32472 WUBlastX LTR_Gypsy-Cigr 650 853 39 + . . C32472 WUBlastX LTR_Gypsy 680 820 58 + . . C32472 TRF Tandem_Repeat 1155 1208 90 + . . C32472 TRF Tandem_Repeat 3341 3383 86 + . . C32472 TRF Tandem_Repeat 3759 3809 57 + . . C32482 GLEAN promoter 7164 8163 0.832232 + . ID=CGI_10000900; C32482 GLEAN mRNA 8164 10615 0.832232 + . ID=CGI_10000900; C32484 GLEAN promoter 1 935 0.544852 + . ID=CGI_10000902; C32484 GLEAN mRNA 936 10888 0.544852 + . ID=CGI_10000902; C32484 GLEAN mRNA 6779 10866 0.999993 - . ID=CGI_10000903; C32484 GLEAN promoter 10867 11774 0.999993 - . ID=CGI_10000903; C32512 GLEAN promoter 1 876 0.651135 + . ID=CGI_10000906; C32512 WUBlastX DNA_TcMar-Fot1 5 550 358 - . . C32512 GLEAN mRNA 877 9878 0.651135 + . ID=CGI_10000906; C32512 WUBlastX LINE_RTE-X 6405 6641 53 + . . C32516 WUBlastX LINE_L1 3241 3486 69 - . . C32516 WUBlastX LINE_L1 3328 3510 79 - . . C32516 WUBlastX LINE_L1-Tx1 3358 3702 74 - . . C32516 WUBlastX LTR_Ngaro 6088 6201 57 - . . C32516 WUBlastX LTR_Ngaro 6191 6886 284 - . . C32516 WUBlastX LTR_Ngaro 6504 7595 432 - . . C32516 WUBlastX LTR_Ngaro 6918 7634 435 - . . C32516 WUBlastX LTR_Ngaro 6933 7787 305 - . . C32516 WUBlastX LTR_Ngaro 7747 8439 118 - . . C32516 WUBlastX LTR_Ngaro 7774 8208 137 - . . C32532 WUBlastX LINE_L1-Tx1 2 337 167 - . . C32532 GLEAN mRNA 384 737 0.987944 - . ID=CGI_10000908; C32532 WUBlastX LINE_I-Nimb 435 1109 37 - . . C32532 WUBlastX LINE_I-Nimb 648 1304 41 - . . C32532 GLEAN promoter 738 1737 0.987944 - . ID=CGI_10000908; C32532 WUBlastX LINE_CR1 930 1655 232 - . . C32532 TRF Tandem_Repeat 2083 2144 74 + . . C32532 TRF Tandem_Repeat 2090 2140 75 + . . C32532 TRF Tandem_Repeat 2098 2145 51 + . . C32532 GLEAN promoter 3818 4817 1 + . ID=CGI_10000909; C32532 GLEAN mRNA 4818 6568 1 + . ID=CGI_10000909; C32536 WUBlastX LINE_RTE-X 40 1614 637 + . . C32536 WUBlastX LINE_RTE-X 1072 1713 166 + . . C32536 WUBlastX LINE_RTE-X 1751 2125 71 + . . C32536 WUBlastX LINE_RTE-X 2647 3195 179 - . . C32536 GLEAN mRNA 3574 9269 0.999661 - . ID=CGI_10000910; C32536 WUBlastX LINE_RTE-X 3746 4375 390 - . . C32536 WUBlastX LINE_RTE-X 4324 4992 114 - . . C32536 WUBlastX LINE_RTE-X 4363 4767 231 - . . C32536 GLEAN promoter 9270 10269 0.999661 - . ID=CGI_10000910; C32536 TRF Tandem_Repeat 9777 9818 84 + . . C32542 TRF Tandem_Repeat 5789 5882 152 + . . C32542 TRF Tandem_Repeat 9391 9694 410 + . . C32542 WUBlastX LINE_RTE-X 11201 11857 166 - . . C32542 WUBlastX LINE_RTE-X 11204 11743 169 - . . C32552 GLEAN mRNA 818 10296 0.999496 - . ID=CGI_10000912; C32552 GLEAN promoter 10297 11296 0.999496 - . ID=CGI_10000912; C32554 GLEAN mRNA 3429 7957 0.993907 - . ID=CGI_10000913; C32554 GLEAN promoter 7958 8957 0.993907 - . ID=CGI_10000913; C32568 GLEAN mRNA 640 2280 0.999372 - . ID=CGI_10000915; C32568 GLEAN promoter 2281 3280 0.999372 - . ID=CGI_10000915; C32578 GLEAN promoter 8396 9395 0.649383 + . ID=CGI_10000916; C32578 WUBlastX LINE_L2 8766 9482 66 + . . C32578 WUBlastX LINE_L1 8892 9518 98 + . . C32578 GLEAN mRNA 9396 9944 0.649383 + . ID=CGI_10000916; C32578 WUBlastX LINE_L1 10659 10928 64 + . . C32578 WUBlastX LINE_L1-Tx1 10701 10928 143 + . . C32578 WUBlastX LINE_L1-Tx1 10901 11191 116 + . . C32578 WUBlastX LINE_L1-Tx1 11197 11331 51 + . . C32578 WUBlastX LINE_L1-Tx1 11203 11355 24 + . . C32578 WUBlastX LINE_L1-Tx1 11369 11614 31 + . . C32578 WUBlastX LINE_L1 11396 11593 109 + . . C32578 WUBlastX LINE_L1-Tx1 11647 12006 354 + . . C32596 GLEAN mRNA 1775 7208 0.650923 - . ID=CGI_10000920; C32596 GLEAN promoter 5560 6559 0.999415 + . ID=CGI_10000921; C32596 GLEAN mRNA 6560 8356 0.999415 + . ID=CGI_10000921; C32596 GLEAN promoter 7209 8208 0.650923 - . ID=CGI_10000920; C32606 TRF Tandem_Repeat 572 1240 908 + . . C32606 WUBlastX LTR_Gypsy 5221 6210 81 + . . C32606 WUBlastX LTR_Gypsy-Cigr 5389 6063 183 + . . C32606 WUBlastX DNA_Harbinger 6583 6879 100 + . . C32606 WUBlastX DNA_hAT-hATw 8243 8836 151 - . . C32606 WUBlastX DNA_Harbinger 9427 10134 364 - . . C32606 WUBlastX LTR_Gypsy-Cigr 10358 11272 181 + . . C32606 WUBlastX LTR_Gypsy 10978 12075 514 + . . C32606 WUBlastX LTR_Gypsy-Cigr 11185 12075 765 + . . C32614 GLEAN mRNA 458 896 0.999824 - . ID=CGI_10000923; C32614 GLEAN promoter 897 1896 0.999824 - . ID=CGI_10000923; C32614 TRF Tandem_Repeat 925 958 68 + . . C32614 WUBlastX DNA_TcMar-Marin 1783 1863 39 + . . C32614 WUBlastX DNA_TcMar-Marin 1975 2250 21 + . . C32614 TRF Tandem_Repeat 5693 5728 72 + . . C32614 WUBlastX DNA_TcMar-Tc1 8061 8597 77 - . . C32614 WUBlastX DNA_TcMar-Tc1 8639 8899 32 - . . C32614 WUBlastX DNA_TcMar-Tc1 8893 9027 36 - . . C32614 TRF Tandem_Repeat 10565 10629 121 + . . C32614 TRF Tandem_Repeat 12085 12123 78 + . . C32636 GLEAN mRNA 861 6046 1 - . ID=CGI_10000931; C32636 GLEAN promoter 6047 7046 1 - . ID=CGI_10000931; C32636 GLEAN mRNA 7000 9678 1 - . ID=CGI_10000932; C32636 GLEAN promoter 9679 10678 1 - . ID=CGI_10000932; C32654 GLEAN mRNA 1535 6634 0.801517 - . ID=CGI_10000934; C32654 GLEAN promoter 5856 6855 1 + . ID=CGI_10000935; C32654 GLEAN promoter 6635 7634 0.801517 - . ID=CGI_10000934; C32654 GLEAN mRNA 6856 11944 1 + . ID=CGI_10000935; C32656 GLEAN mRNA 2029 4677 1 - . ID=CGI_10000936; C32656 GLEAN promoter 4678 5677 1 - . ID=CGI_10000936; C32660 GLEAN mRNA 571 3111 0.999927 - . ID=CGI_10000937; C32660 GLEAN promoter 3112 4111 0.999927 - . ID=CGI_10000937; C32660 GLEAN promoter 5431 6430 0.999676 + . ID=CGI_10000938; C32660 GLEAN mRNA 6431 7555 0.999676 + . ID=CGI_10000938; C32674 WUBlastX DNA_TcMar-Tc1 441 1172 267 - . . C32682 GLEAN mRNA 11101 12175 0.999998 - . ID=CGI_10000940; C32682 GLEAN promoter 12176 12361 0.999998 - . ID=CGI_10000940; C32714 TRF Tandem_Repeat 1 42 84 + . . C32714 GLEAN promoter 1275 2274 0.481173 + . ID=CGI_10000942; C32714 GLEAN mRNA 2275 3687 0.481173 + . ID=CGI_10000942; C32714 WUBlastX LTR_Gypsy 8754 9290 51 - . . C32714 WUBlastX LTR_Gypsy 8835 9284 89 - . . C32714 WUBlastX LTR_Gypsy 9778 10053 94 - . . C32714 WUBlastX LTR_Gypsy 11002 11058 48 - . . C32714 WUBlastX LTR_Gypsy 11503 11622 37 - . . C32728 WUBlastX DNA_Sola 3365 3640 180 + . . C32728 WUBlastX DNA_Sola 3834 4094 100 + . . C32728 WUBlastX DNA_Sola 3876 4073 151 + . . C32728 TRF Tandem_Repeat 11511 11567 114 + . . C32748 GLEAN promoter 5571 6570 0.776639 + . ID=CGI_10000945; C32748 GLEAN mRNA 6571 6864 0.776639 + . ID=CGI_10000945; C32774 GLEAN promoter 1 433 0.999675 + . ID=CGI_10000948; C32774 GLEAN mRNA 119 6134 1 - . ID=CGI_10000947; C32774 GLEAN mRNA 434 12346 0.999675 + . ID=CGI_10000948; C32774 GLEAN promoter 6135 7134 1 - . ID=CGI_10000947; C32778 WUBlastX DNA_En-Spm 6739 6891 43 - . . C32778 WUBlastX DNA_En-Spm 6891 7100 97 - . . C32778 WUBlastX LTR_Gypsy 7102 7221 50 - . . C32778 WUBlastX LTR_Gypsy-Cigr 7163 7390 59 - . . C32778 WUBlastX LTR_Gypsy 7214 7396 111 - . . C32794 GLEAN mRNA 7027 7212 0.560043 - . ID=CGI_10000950; C32794 GLEAN promoter 7213 8212 0.560043 - . ID=CGI_10000950; C32812 GLEAN promoter 1 129 0.999942 + . ID=CGI_10000953; C32812 GLEAN mRNA 130 11753 0.999942 + . ID=CGI_10000953; C32814 GLEAN mRNA 2547 6577 1 - . ID=CGI_10000954; C32814 GLEAN promoter 3791 4790 0.558395 + . ID=CGI_10000955; C32814 GLEAN mRNA 4791 8500 0.558395 + . ID=CGI_10000955; C32814 GLEAN promoter 6578 7577 1 - . ID=CGI_10000954; C32814 GLEAN promoter 9433 10432 1 + . ID=CGI_10000956; C32814 GLEAN mRNA 10433 11176 1 + . ID=CGI_10000956; C32838 TRF Tandem_Repeat 1 125 97 + . . C32838 WUBlastX RC_Helitron 5714 5947 200 - . . C32838 WUBlastX LINE_L1 6608 6895 61 - . . C32838 TRF Tandem_Repeat 7925 7965 68 + . . C32838 WUBlastX DNA_TcMar-Fot1 8834 9628 186 + . . C32838 WUBlastX DNA_TcMar-Fot1 9302 9628 215 + . . C32838 WUBlastX DNA_TcMar-Fot1 9314 9691 94 + . . C32838 WUBlastX LTR_Pao 12189 12290 64 - . . C32838 WUBlastX LTR_Pao 12296 12481 127 - . . C32838 WUBlastX LTR_Pao 12325 12552 40 - . . C32838 WUBlastX LTR_Pao 12481 12603 27 - . . C32842 GLEAN mRNA 68 3575 0.952672 - . ID=CGI_10000958; C32842 GLEAN promoter 3576 4575 0.952672 - . ID=CGI_10000958; C32848 GLEAN promoter 7385 8384 0.481541 + . ID=CGI_10000960; C32848 GLEAN mRNA 8385 10007 0.481541 + . ID=CGI_10000960; C32848 GLEAN promoter 9213 10212 1 + . ID=CGI_10000961; C32848 GLEAN mRNA 10213 10398 1 + . ID=CGI_10000961; C32888 WUBlastX DNA_PiggyBac 7034 8248 405 - . . C32888 WUBlastX DNA_PiggyBac 8056 8565 135 - . . C32888 WUBlastX DNA_Kolobok-IS4 10548 10838 68 - . . C32888 WUBlastX DNA_IS4EU 10635 10838 84 - . . C32888 WUBlastX DNA_IS4EU 10862 11059 67 - . . C32888 WUBlastX LINE_L2 11623 11673 23 - . . C32888 WUBlastX LINE_L2 11852 11944 27 - . . C32888 WUBlastX LINE_CR1-L2 11964 12146 72 - . . C32888 WUBlastX LINE_L2 12122 12676 80 - . . C32888 WUBlastX LINE_CR1-L2 12380 12799 76 - . . C32888 WUBlastX LINE_CR1-L2 12443 12682 116 - . . C32918 WUBlastX LINE_CR1 4422 4802 70 + . . C32918 WUBlastX DNA_TcMar-Fot1 7296 7499 58 + . . C32918 TRF Tandem_Repeat 8596 8620 50 + . . C32918 WUBlastX DNA_TcMar-Fot1 8722 9246 100 + . . C32918 WUBlastX DNA_TcMar-Fot1 8785 9210 120 + . . C32918 WUBlastX DNA_TcMar-Fot1 9185 9361 33 + . . C32918 WUBlastX DNA_TcMar-Fot1 9351 9407 40 + . . C32918 WUBlastX DNA_TcMar-Fot1 9363 9725 67 + . . C32918 WUBlastX DNA_TcMar-Fot1 9363 9623 91 + . . C32974 WUBlastX LINE_Proto2 4824 5351 53 - . . C32974 WUBlastX LINE_Proto2 4929 5264 104 - . . C32974 WUBlastX LINE_Proto2 4935 5351 85 - . . C32984 GLEAN mRNA 5229 10162 1 - . ID=CGI_10000975; C32984 WUBlastX LINE_RTE-X 5881 6078 46 + . . C32984 GLEAN promoter 10163 11162 1 - . ID=CGI_10000975; C32984 TRF Tandem_Repeat 11104 11131 56 + . . C32992 GLEAN mRNA 1477 6000 0.999994 - . ID=CGI_10000976; C32992 GLEAN promoter 6001 7000 0.999994 - . ID=CGI_10000976; C32992 GLEAN mRNA 9246 9527 0.999068 - . ID=CGI_10000977; C32992 GLEAN promoter 9528 10527 0.999068 - . ID=CGI_10000977; C32994 GLEAN promoter 1 862 0.999496 + . ID=CGI_10000978; C32994 GLEAN mRNA 863 12356 0.999496 + . ID=CGI_10000978; C33024 TRF Tandem_Repeat 157 198 75 + . . C33024 WUBlastX LINE_L1-Tx1 369 545 62 - . . C33024 WUBlastX LINE_L1-Tx1 524 2341 459 - . . C33024 WUBlastX LINE_L1-Tx1 1821 2591 146 - . . C33024 WUBlastX LINE_L1-Tx1 2596 2679 38 - . . C33024 WUBlastX LINE_L1 2711 2800 24 - . . C33024 WUBlastX LINE_L1-Tx1 3931 4311 58 - . . C33084 TRF Tandem_Repeat 782 806 50 + . . C33084 WUBlastX DNA_hAT-hATw 5049 5399 80 + . . C33084 WUBlastX DNA_hAT-hATw 5354 6823 486 + . . C33084 GLEAN mRNA 9407 12301 0.81859 - . ID=CGI_10000989; C33084 GLEAN promoter 12302 13301 0.81859 - . ID=CGI_10000989; C33084 WUBlastX LINE_RTE-BovB 12746 13339 451 - . . C33102 GLEAN promoter 1 281 0.999994 + . ID=CGI_10000991; C33102 GLEAN mRNA 282 3329 0.999994 + . ID=CGI_10000991; C33102 GLEAN mRNA 4278 5782 1 - . ID=CGI_10000992; C33102 GLEAN promoter 5400 6399 0.991247 + . ID=CGI_10000993; C33102 GLEAN promoter 5783 6782 1 - . ID=CGI_10000992; C33102 GLEAN mRNA 6400 7428 0.991247 + . ID=CGI_10000993; C33126 WUBlastX DNA_TcMar-Tc1 5676 5828 50 - . . C33126 WUBlastX DNA_TcMar-Tc1 5679 6266 31 - . . C33126 WUBlastX DNA_TcMar-Tc1 5997 6230 46 - . . C33128 GLEAN promoter 1 835 0.999619 + . ID=CGI_10000998; C33128 GLEAN mRNA 836 3741 0.999619 + . ID=CGI_10000998; C33128 GLEAN promoter 3121 4120 0.593358 + . ID=CGI_10000999; C33128 GLEAN mRNA 4121 4516 0.593358 + . ID=CGI_10000999; C33128 GLEAN mRNA 5160 5516 1 - . ID=CGI_10001000; C33128 GLEAN promoter 5517 6516 1 - . ID=CGI_10001000; C33128 GLEAN promoter 5806 6805 1 + . ID=CGI_10001001; C33128 GLEAN mRNA 6806 8945 1 + . ID=CGI_10001001; C33148 TRF Tandem_Repeat 414 1682 1360 + . . C33148 GLEAN mRNA 5142 11739 0.999994 - . ID=CGI_10001003; C33148 WUBlastX DNA_hAT 10045 10938 68 - . . C33148 GLEAN promoter 11740 12739 0.999994 - . ID=CGI_10001003; C33172 GLEAN mRNA 310 8002 0.642671 - . ID=CGI_10001007; C33172 GLEAN promoter 8003 9002 0.642671 - . ID=CGI_10001007; C33172 WUBlastX LTR_Ngaro 12402 13142 199 + . . C33172 WUBlastX LTR_Ngaro 12672 13289 68 + . . C33172 WUBlastX LTR_Ngaro 13393 13551 59 + . . C33188 TRF Tandem_Repeat 472 508 67 + . . C33188 WUBlastX DNA_Harbinger 2458 2646 37 - . . C33188 WUBlastX DNA_Harbinger 2494 2691 142 - . . C33188 WUBlastX DNA_Harbinger 2494 2763 134 - . . C33188 WUBlastX DNA_Harbinger 3277 3537 131 - . . C33188 WUBlastX DNA_Harbinger 3289 3501 146 - . . C33188 WUBlastX DNA_Harbinger 3707 4159 37 - . . C33188 TRF Tandem_Repeat 8328 9071 1001 + . . C33200 GLEAN promoter 8850 9849 1 + . ID=CGI_10001009; C33200 GLEAN mRNA 9850 10436 1 + . ID=CGI_10001009; C33204 TRF Tandem_Repeat 4041 4073 66 + . . C33204 WUBlastX LINE_L1-Tx1 12549 12992 24 + . . C33204 WUBlastX LINE_L1-Tx1 12558 12785 34 + . . C33204 WUBlastX LINE_L1 12633 12848 33 + . . C33220 GLEAN mRNA 7464 10449 1 - . ID=CGI_10001013; C33220 GLEAN promoter 10450 11449 1 - . ID=CGI_10001013; C33230 GLEAN promoter 1104 2103 0.974809 + . ID=CGI_10001014; C33230 GLEAN mRNA 2104 13510 0.974809 + . ID=CGI_10001014; C33244 WUBlastX LTR_Gypsy 1 1512 926 + . . C33244 WUBlastX LTR_Gypsy 397 1725 468 + . . C33244 TRF Tandem_Repeat 3908 3981 78 + . . C33244 TRF Tandem_Repeat 3908 3974 116 + . . C33244 TRF Tandem_Repeat 3908 3969 70 + . . C33244 WUBlastX LINE_L2 4684 5709 36 + . . C33244 WUBlastX LINE_RTE-X 4849 6711 763 + . . C33244 GLEAN promoter 7045 8044 0.999861 + . ID=CGI_10001017; C33244 GLEAN mRNA 8045 8344 0.999861 + . ID=CGI_10001017; C33244 TRF Tandem_Repeat 8351 8473 169 + . . C33244 TRF Tandem_Repeat 13336 13401 62 + . . C33256 GLEAN mRNA 121 441 0.734447 - . ID=CGI_10001024; C33256 GLEAN promoter 442 1441 0.734447 - . ID=CGI_10001024; C33256 WUBlastX DNA_TcMar-Tc1 6143 6364 135 - . . C33256 WUBlastX DNA_TcMar-Tc1 6366 6452 26 - . . C33256 WUBlastX DNA_TcMar-Tc1 6384 6890 67 - . . C33256 WUBlastX DNA_TcMar-Tc1 6399 6821 182 - . . C33256 WUBlastX DNA_TcMar-Tc1 6829 6999 31 - . . C33256 WUBlastX LTR_Ngaro 7306 7722 67 - . . C33256 WUBlastX LTR_Ngaro 7761 8060 103 - . . C33256 WUBlastX LTR_Ngaro 7782 8237 41 - . . C33256 WUBlastX LTR_Gypsy-Cigr 8904 9203 99 - . . C33256 WUBlastX LTR_Gypsy 8928 9299 70 - . . C33256 WUBlastX LTR_Gypsy-Cigr 9944 10030 24 - . . C33256 WUBlastX LTR_Gypsy 9977 10024 26 - . . C33256 WUBlastX LTR_Gypsy 10033 10290 36 - . . C33256 WUBlastX LTR_Gypsy 10135 10293 48 - . . C33256 WUBlastX LTR_Gypsy-Cigr 10153 10263 53 - . . C33256 WUBlastX LTR_Gypsy 10293 10364 20 - . . C33260 GLEAN promoter 1 653 1 + . ID=CGI_10001025; C33260 GLEAN mRNA 654 1077 1 + . ID=CGI_10001025; C33260 WUBlastX LTR_DIRS 3401 3598 36 + . . C33260 WUBlastX LTR_DIRS 3446 3565 67 + . . C33260 TRF Tandem_Repeat 4074 4280 186 + . . C33306 GLEAN promoter 1 254 0.999068 + . ID=CGI_10001029; C33306 GLEAN mRNA 255 1448 0.999068 + . ID=CGI_10001029; C33306 GLEAN promoter 2533 3532 0.999932 + . ID=CGI_10001031; C33306 GLEAN mRNA 3533 4159 0.999932 + . ID=CGI_10001031; C33306 GLEAN promoter 5653 6652 0.999645 + . ID=CGI_10001033; C33306 GLEAN mRNA 6653 7687 0.999645 + . ID=CGI_10001033; C33306 GLEAN promoter 7011 8010 0.994676 + . ID=CGI_10001034; C33306 GLEAN mRNA 8011 9576 0.994676 + . ID=CGI_10001034; C33306 WUBlastX DNA_En-Spm 11733 11852 39 + . . C33306 GLEAN mRNA 11974 13365 0.649524 - . ID=CGI_10001038; C33306 GLEAN promoter 13366 13910 0.649524 - . ID=CGI_10001038; C33308 GLEAN promoter 997 1996 0.99967 + . ID=CGI_10001040; C33308 GLEAN mRNA 1997 5619 0.99967 + . ID=CGI_10001040; C33308 TRF Tandem_Repeat 2612 2637 52 + . . C33308 TRF Tandem_Repeat 6702 6758 114 + . . C33308 TRF Tandem_Repeat 9232 9274 70 + . . C33308 GLEAN mRNA 10513 11113 0.996858 - . ID=CGI_10001041; C33308 GLEAN promoter 11114 12113 0.996858 - . ID=CGI_10001041; C33308 WUBlastX DNA_Harbinger 11627 11845 91 + . . C33308 WUBlastX DNA_Harbinger 12231 12680 68 + . . C33308 WUBlastX DNA_Harbinger 12301 12402 87 + . . C33308 WUBlastX DNA_Harbinger 12390 12677 281 + . . C33308 WUBlastX DNA_Harbinger 12755 13246 327 + . . C33310 GLEAN mRNA 55 13327 0.997802 - . ID=CGI_10001039; C33310 GLEAN promoter 13328 13918 0.997802 - . ID=CGI_10001039; C33320 GLEAN mRNA 339 752 0.776401 - . ID=CGI_10001042; C33320 GLEAN promoter 753 1752 0.776401 - . ID=CGI_10001042; C33320 WUBlastX LTR_Gypsy 913 1110 30 - . . C33320 GLEAN promoter 5833 6832 0.999999 + . ID=CGI_10001043; C33320 GLEAN mRNA 6833 11789 0.999999 + . ID=CGI_10001043; C33320 TRF Tandem_Repeat 12853 13085 254 + . . C33320 TRF Tandem_Repeat 12854 13088 407 + . . C33332 WUBlastX RC_Helitron 12 1895 1112 + . . C33332 WUBlastX RC_Helitron 1904 2176 48 + . . C33332 WUBlastX RC_Helitron 1958 2176 72 + . . C33332 GLEAN promoter 2295 3294 0.999604 + . ID=CGI_10001044; C33332 GLEAN mRNA 3295 6430 0.999604 + . ID=CGI_10001044; C33332 TRF Tandem_Repeat 9095 9128 50 + . . C33332 TRF Tandem_Repeat 9575 9863 221 + . . C33332 TRF Tandem_Repeat 9858 9939 103 + . . C33332 TRF Tandem_Repeat 10033 10069 74 + . . C33332 TRF Tandem_Repeat 10144 10170 54 + . . C33332 GLEAN promoter 11265 12264 0.776791 + . ID=CGI_10001045; C33332 TRF Tandem_Repeat 11726 11933 195 + . . C33332 TRF Tandem_Repeat 11726 11933 240 + . . C33332 TRF Tandem_Repeat 11726 12003 159 + . . C33332 GLEAN mRNA 12265 12756 0.776791 + . ID=CGI_10001045; C33332 TRF Tandem_Repeat 13885 13963 144 + . . C33368 TRF Tandem_Repeat 197 269 146 + . . C33368 GLEAN promoter 1894 2893 0.564757 + . ID=CGI_10001057; C33368 TRF Tandem_Repeat 2155 2220 78 + . . C33368 GLEAN mRNA 2894 7917 0.564757 + . ID=CGI_10001057; C33368 WUBlastX DNA_Kolobok-Hyd 7372 7908 44 + . . C33368 WUBlastX DNA_Kolobok-Hyd 7390 7734 70 + . . C33368 GLEAN promoter 8292 9291 0.999999 + . ID=CGI_10001058; C33368 TRF Tandem_Repeat 8986 9036 66 + . . C33368 TRF Tandem_Repeat 8991 9044 63 + . . C33368 GLEAN mRNA 9292 9900 0.999999 + . ID=CGI_10001058; C33378 WUBlastX DNA_TcMar-Fot1 2099 2326 29 - . . C33378 WUBlastX DNA_TcMar-Fot1 2147 2332 31 - . . C33378 WUBlastX DNA_TcMar-Fot1 2222 2344 92 - . . C33378 WUBlastX DNA_TcMar-Fot1 2423 2656 122 - . . C33378 WUBlastX DNA_TcMar-Fot1 3149 3409 176 - . . C33378 WUBlastX DNA_TcMar-Fot1 3423 3692 99 - . . C33378 WUBlastX DNA_TcMar-Fot1 3465 3740 33 - . . C33378 WUBlastX LTR_Ngaro 6457 7356 264 - . . C33378 WUBlastX LTR_Ngaro 7370 7819 273 - . . C33378 WUBlastX LTR_Ngaro 7394 8017 149 - . . C33378 WUBlastX LTR_Ngaro 9080 9790 418 - . . C33378 WUBlastX LTR_Ngaro 9829 9990 68 - . . C33378 WUBlastX LTR_Ngaro 9829 10035 51 - . . C33378 WUBlastX LTR_Ngaro 9990 10124 20 - . . C33378 WUBlastX LTR_Ngaro 10410 11252 58 - . . C33378 TRF Tandem_Repeat 12972 13022 102 + . . C33378 TRF Tandem_Repeat 14035 14127 150 + . . C33408 WUBlastX DNA_Sola 4307 4474 54 - . . C33408 WUBlastX DNA_Sola 4521 4841 36 - . . C33408 TRF Tandem_Repeat 11956 12005 66 + . . C33408 TRF Tandem_Repeat 11957 12002 58 + . . C33436 WUBlastX RC_Helitron 1413 1676 41 + . . C33436 WUBlastX RC_Helitron 2140 3210 129 + . . C33436 WUBlastX RC_Helitron 2368 3216 365 + . . C33436 WUBlastX RC_Helitron 3188 4222 537 + . . C33436 WUBlastX RC_Helitron 4016 4303 47 + . . C33436 WUBlastX RC_Helitron 4330 4758 55 + . . C33436 WUBlastX RC_Helitron 4498 4746 76 + . . C33464 TRF Tandem_Repeat 5139 5172 50 + . . C33464 TRF Tandem_Repeat 5142 5185 70 + . . C33464 TRF Tandem_Repeat 5914 6596 1022 + . . C33464 WUBlastX LINE_Penelope 10868 11353 44 - . . C33464 WUBlastX LINE_Penelope 10976 11365 59 - . . C33478 GLEAN mRNA 86 8613 0.841131 - . ID=CGI_10001070; C33478 GLEAN promoter 8614 9613 0.841131 - . ID=CGI_10001070; C33482 WUBlastX LINE_CR1-L2 3155 3337 35 + . . C33482 WUBlastX LINE_CR1-L2 3360 3623 46 + . . C33482 WUBlastX LINE_L2 3369 3827 46 + . . C33482 WUBlastX LINE_L2 3851 4009 33 + . . C33482 WUBlastX LINE_CR1 3875 3976 37 + . . C33482 WUBlastX LINE_CR1-L2 4102 4563 71 + . . C33482 WUBlastX LINE_CR1-L2 4102 4389 93 + . . C33482 WUBlastX LINE_CR1-L2 4105 4488 72 + . . C33482 WUBlastX LINE_CR1-L2 4538 4942 28 + . . C33482 WUBlastX LINE_CR1-L2 4730 4942 60 + . . C33482 WUBlastX LINE_CR1-L2 4772 4942 69 + . . C33482 GLEAN promoter 8055 9054 0.651135 + . ID=CGI_10001071; C33482 GLEAN mRNA 9055 12011 0.651135 + . ID=CGI_10001071; C33496 WUBlastX LINE_RTE-X 502 1140 83 + . . C33496 WUBlastX LINE_RTE-X 4290 4400 28 + . . C33496 WUBlastX LINE_RTE-X 4459 5013 28 + . . C33496 WUBlastX LINE_RTE-X 4702 4974 78 + . . C33496 WUBlastX LINE_RTE-X 4880 5350 120 + . . C33496 WUBlastX LINE_L2 5255 5404 36 + . . C33496 WUBlastX LINE_CR1-L2 5288 5377 42 + . . C33496 WUBlastX LINE_RTE-X 5629 6408 214 + . . C33496 WUBlastX LINE_RTE-X 6548 6823 21 + . . C33496 TRF Tandem_Repeat 12138 12853 461 + . . C33510 WUBlastX LINE_RTE-X 4693 5073 85 + . . C33510 WUBlastX LINE_RTE-X 4759 5070 168 + . . C33510 WUBlastX LINE_RTE-X 4804 5121 40 + . . C33510 WUBlastX LINE_RTE-BovB 5051 5155 28 + . . C33510 WUBlastX LINE_RTE-X 5159 5272 46 + . . C33510 WUBlastX LINE_RTE-X 5162 5347 35 + . . C33510 WUBlastX LINE_RTE-X 5168 5236 49 + . . C33510 WUBlastX LINE_RTE-X 5171 5305 44 + . . C33510 WUBlastX LINE_L1 5568 5642 23 + . . C33510 WUBlastX LINE_RTE-X 5854 5928 31 + . . C33510 WUBlastX LINE_RTE-X 5987 6265 66 + . . C33510 WUBlastX LINE_RTE-X 5987 6328 34 + . . C33510 GLEAN mRNA 8334 11429 1 - . ID=CGI_10001078; C33510 GLEAN promoter 11430 12429 1 - . ID=CGI_10001078; C33510 TRF Tandem_Repeat 13015 13764 1051 + . . C33524 TRF Tandem_Repeat 5031 5064 52 + . . C33524 WUBlastX LINE_L2 12990 14549 972 - . . C33534 WUBlastX LINE_L1 9447 10277 50 + . . C33534 WUBlastX LINE_L2 9585 10082 81 + . . C33534 WUBlastX LINE_CR1-L2 9672 10268 173 + . . C33534 WUBlastX LINE_L2 9789 10268 190 + . . C33534 WUBlastX LINE_CR1-L2 10953 11489 159 + . . C33534 WUBlastX LINE_CR1-L2 11037 11489 162 + . . C33534 WUBlastX LINE_L2 11148 11489 208 + . . C33534 WUBlastX LINE_L2 11525 13150 704 + . . C33534 WUBlastX LINE_L2 12937 14292 619 + . . C33560 WUBlastX LINE_RTE-X 556 927 28 - . . C33560 WUBlastX LINE_RTE-X 703 927 36 - . . C33560 WUBlastX LINE_RTE-X 918 1061 33 - . . C33560 WUBlastX LINE_RTE-RTE 936 1040 42 - . . C33560 WUBlastX LINE_RTE-X 1064 1252 53 - . . C33560 WUBlastX LINE_RTE-X 1076 1225 79 - . . C33560 TRF Tandem_Repeat 13980 14071 78 + . . C33576 GLEAN promoter 3309 4308 1 + . ID=CGI_10001092; C33576 GLEAN mRNA 4309 7068 1 + . ID=CGI_10001092; C33576 GLEAN promoter 7725 8724 0.636303 + . ID=CGI_10001094; C33576 GLEAN mRNA 8390 8701 0.618186 - . ID=CGI_10001093; C33576 GLEAN promoter 8702 9701 0.618186 - . ID=CGI_10001093; C33576 GLEAN mRNA 8725 9563 0.636303 + . ID=CGI_10001094; C33576 GLEAN mRNA 12204 12890 0.952418 - . ID=CGI_10001095; C33576 GLEAN promoter 12891 13890 0.952418 - . ID=CGI_10001095; C33580 WUBlastX LTR_Pao 4945 5724 41 + . . C33580 WUBlastX LTR_Pao 5275 5445 43 + . . C33580 WUBlastX LTR_Pao 6027 7292 605 + . . C33580 WUBlastX LTR_Pao 7428 7508 28 + . . C33580 WUBlastX LTR_Pao 8009 8425 199 + . . C33580 WUBlastX LTR_Pao 8105 9748 1201 + . . C33580 WUBlastX LTR_Pao 9745 9981 223 + . . C33580 WUBlastX LTR_Pao 9784 10056 91 + . . C33592 WUBlastX LTR_Gypsy 8 787 689 + . . C33592 WUBlastX LTR_Gypsy 786 1688 215 + . . C33592 WUBlastX LTR_Gypsy 792 1310 276 + . . C33592 WUBlastX DNA_Zator 8348 8704 65 - . . C33592 WUBlastX DNA_Zator 8894 9289 140 - . . C33592 TRF Tandem_Repeat 9315 9358 70 + . . C33592 TRF Tandem_Repeat 9316 9354 60 + . . C33592 TRF Tandem_Repeat 9365 10222 1148 + . . C33592 WUBlastX DNA_Zator 10537 12474 699 - . . C33592 GLEAN mRNA 14042 14437 0.618241 - . ID=CGI_10001105; C33592 GLEAN promoter 14438 14870 0.618241 - . ID=CGI_10001105; C33614 GLEAN promoter 1983 2982 0.999892 + . ID=CGI_10001108; C33614 GLEAN mRNA 2983 14703 0.999892 + . ID=CGI_10001108; C33646 WUBlastX LTR_DIRS 2914 4416 524 + . . C33646 WUBlastX LTR_DIRS 4472 4579 30 + . . C33646 WUBlastX LTR_DIRS 4861 5253 156 + . . C33646 WUBlastX LTR_DIRS? 5284 5661 229 + . . C33654 GLEAN promoter 1501 2500 0.999996 + . ID=CGI_10001111; C33654 WUBlastX LINE_RTE-X 1895 2107 37 - . . C33654 GLEAN mRNA 2501 14319 0.999996 + . ID=CGI_10001111; C33654 TRF Tandem_Repeat 10157 10190 68 + . . C33654 WUBlastX LINE_RTE-X 11840 12361 26 + . . C33654 WUBlastX LINE_RTE-X 11885 12190 66 + . . C33654 WUBlastX LINE_RTE-X 12014 12313 68 + . . C33658 GLEAN mRNA 219 653 0.999372 - . ID=CGI_10001112; C33658 GLEAN promoter 654 1653 0.999372 - . ID=CGI_10001112; C33658 WUBlastX LINE_L1-Tx1 2486 2899 111 + . . C33658 WUBlastX LINE_L1-Tx1 2651 2971 200 + . . C33658 WUBlastX LINE_L1-Tx1 2654 3028 58 + . . C33658 WUBlastX LINE_L1 3383 3496 29 - . . C33658 WUBlastX LINE_L1-Tx1 3401 4402 153 - . . C33658 WUBlastX LINE_L1-Tx1 4267 5265 279 - . . C33658 WUBlastX LINE_L1-Tx1 4426 5268 470 - . . C33658 WUBlastX LINE_CR1 5265 5594 123 - . . C33658 WUBlastX LINE_L1-Tx1 5596 5985 285 + . . C33658 WUBlastX LINE_L1-Tx1 5596 6072 230 + . . C33658 WUBlastX LINE_L1-Tx1 6019 6606 98 + . . C33658 WUBlastX LINE_L1-Tx1 6630 6899 32 + . . C33658 TRF Tandem_Repeat 7152 7215 128 + . . C33658 GLEAN mRNA 10027 15037 0.499831 - . ID=CGI_10001113; C33658 WUBlastX DNA_Sola 10759 10881 23 + . . C33658 WUBlastX DNA_Sola 10830 11423 34 + . . C33658 WUBlastX DNA_Sola 10953 11453 59 + . . C33658 WUBlastX DNA_Sola 11145 11531 58 + . . C33658 WUBlastX DNA_Sola 11642 12106 108 + . . C33658 WUBlastX DNA_Sola 11681 12196 91 + . . C33658 GLEAN promoter 15038 15048 0.499831 - . ID=CGI_10001113; C33664 TRF Tandem_Repeat 330 379 91 + . . C33664 WUBlastX LINE_L1-Tx1 432 1007 83 - . . C33664 GLEAN promoter 3321 4320 0.751732 + . ID=CGI_10001114; C33664 GLEAN mRNA 4321 14353 0.751732 + . ID=CGI_10001114; C33664 TRF Tandem_Repeat 10624 11239 681 + . . C33664 TRF Tandem_Repeat 10657 11035 302 + . . C33664 TRF Tandem_Repeat 11053 11216 98 + . . C33688 GLEAN promoter 1 488 1 + . ID=CGI_10001115; C33688 GLEAN mRNA 489 3631 1 + . ID=CGI_10001115; C33688 GLEAN mRNA 7713 8705 0.642516 - . ID=CGI_10001116; C33688 GLEAN promoter 8706 9705 0.642516 - . ID=CGI_10001116; C3369 WUBlastX LINE_RTE-BovB 1 114 53 + . . C33708 WUBlastX LTR_Ngaro 2130 2816 139 + . . C33708 WUBlastX LTR_Ngaro 3799 4086 84 + . . C33708 WUBlastX LTR_DIRS 5663 6094 20 + . . C33708 WUBlastX LTR_DIRS 5789 6079 28 + . . C33708 GLEAN mRNA 8220 14973 0.727981 - . ID=CGI_10001120; C33708 TRF Tandem_Repeat 8557 8589 66 + . . C33708 TRF Tandem_Repeat 9783 9818 54 + . . C33708 GLEAN promoter 14974 15162 0.727981 - . ID=CGI_10001120; C33730 WUBlastX LINE_CR1 1 1779 1347 + . . C33730 WUBlastX LTR_Pao 1960 2589 652 - . . C33730 WUBlastX LTR_Pao 2526 4127 757 - . . C33730 WUBlastX LTR_Pao 3358 5868 1471 - . . C33730 WUBlastX LTR_Pao 4138 6279 656 - . . C33730 WUBlastX LTR_Pao 6270 6980 55 - . . C33730 WUBlastX LTR_Pao 6390 7283 627 - . . C33730 WUBlastX LTR_Pao 7412 7684 35 - . . C33730 WUBlastX LINE_L1-Tx1 13752 14108 103 + . . C33730 WUBlastX LINE_L1 14117 14182 71 + . . C33730 WUBlastX LINE_L1 14178 14720 112 + . . C33730 WUBlastX LINE_L1-Tx1 14268 14633 188 + . . C33730 WUBlastX LINE_L1-Tx1 14277 14726 178 + . . C33730 WUBlastX LINE_L1-Tx1 14735 15235 55 + . . C33730 WUBlastX LINE_L1-Tx1 14747 14989 61 + . . C33748 GLEAN promoter 1 799 0.994137 + . ID=CGI_10001129; C33748 GLEAN mRNA 800 3793 0.994137 + . ID=CGI_10001129; C33748 GLEAN promoter 6543 7542 1 + . ID=CGI_10001130; C33748 GLEAN mRNA 7543 10277 1 + . ID=CGI_10001130; C33748 GLEAN promoter 9429 10428 1 + . ID=CGI_10001131; C33748 GLEAN mRNA 10429 11856 1 + . ID=CGI_10001131; C33748 GLEAN mRNA 12354 14228 0.777767 - . ID=CGI_10001132; C33748 GLEAN promoter 14229 15228 0.777767 - . ID=CGI_10001132; C33776 WUBlastX LTR_Gypsy 28 1014 268 + . . C33776 WUBlastX LTR_Gypsy 28 1224 224 + . . C33776 WUBlastX LTR_Gypsy 28 795 404 + . . C33776 GLEAN mRNA 1713 1955 0.999372 - . ID=CGI_10001134; C33776 GLEAN promoter 1956 2955 0.999372 - . ID=CGI_10001134; C33812 GLEAN promoter 314 1313 0.98989 + . ID=CGI_10001138; C33812 GLEAN mRNA 1314 3824 0.98989 + . ID=CGI_10001138; C33812 GLEAN mRNA 7945 13309 0.99999 - . ID=CGI_10001139; C33812 GLEAN promoter 13310 14309 0.99999 - . ID=CGI_10001139; C33864 WUBlastX RC_Helitron 3 1376 359 + . . C33864 WUBlastX LINE_Rex-Babar 1769 1876 27 + . . C33864 WUBlastX RC_Helitron 2892 3116 70 + . . C33864 GLEAN mRNA 4487 13917 0.999834 - . ID=CGI_10001156; C33864 WUBlastX LINE_Jockey 7549 7686 20 - . . C33864 GLEAN promoter 13918 14917 0.999834 - . ID=CGI_10001156; C33864 TRF Tandem_Repeat 15500 15842 334 + . . C33892 GLEAN promoter 706 1705 0.999821 + . ID=CGI_10001157; C33892 GLEAN mRNA 1706 9138 0.999821 + . ID=CGI_10001157; C33892 GLEAN mRNA 12231 15448 0.998023 - . ID=CGI_10001158; C33892 GLEAN promoter 15449 16029 0.998023 - . ID=CGI_10001158; C33952 WUBlastX RC_Helitron 5 2170 1102 - . . C33952 WUBlastX DNA_Helitron 5 1828 1122 - . . C33952 WUBlastX RC_Helitron 5 3604 1051 - . . C33952 WUBlastX RC_Helitron 3167 4066 42 - . . C33952 TRF Tandem_Repeat 4073 4208 150 + . . C33952 TRF Tandem_Repeat 4083 4321 216 + . . C33952 TRF Tandem_Repeat 4169 4321 137 + . . C33952 TRF Tandem_Repeat 4173 4289 124 + . . C33952 TRF Tandem_Repeat 4228 4320 75 + . . C33952 TRF Tandem_Repeat 12816 12854 78 + . . C34010 GLEAN promoter 1749 2748 0.95794 + . ID=CGI_10001179; C34010 GLEAN promoter 2510 3509 0.479003 + . ID=CGI_10001180; C34010 GLEAN mRNA 2749 3510 0.95794 + . ID=CGI_10001179; C34010 GLEAN mRNA 3510 7423 0.479003 + . ID=CGI_10001180; C34010 TRF Tandem_Repeat 8281 9351 1632 + . . C34010 WUBlastX LTR_Ngaro 9775 10278 90 + . . C34010 WUBlastX LTR_Ngaro 10024 10284 107 + . . C34010 WUBlastX LTR_Ngaro 10257 10547 72 + . . C34010 WUBlastX LTR_Ngaro 11996 13189 624 + . . C34010 WUBlastX LTR_Ngaro 13129 13608 289 + . . C34010 WUBlastX LTR_Ngaro 13657 13932 181 + . . C34010 WUBlastX LTR_Ngaro 13657 13986 134 + . . C34010 WUBlastX LTR_Ngaro 14000 14146 69 + . . C34010 WUBlastX LTR_Ngaro 14160 14342 79 + . . C34066 GLEAN promoter 3625 4624 1 + . ID=CGI_10001190; C34066 GLEAN mRNA 4625 8722 1 + . ID=CGI_10001190; C34066 GLEAN promoter 10718 11717 1 + . ID=CGI_10001191; C34066 GLEAN mRNA 11718 15823 1 + . ID=CGI_10001191; C34072 GLEAN mRNA 2908 3690 0.694347 - . ID=CGI_10001193; C34072 GLEAN promoter 3691 4690 0.694347 - . ID=CGI_10001193; C34072 GLEAN mRNA 15162 16400 0.481548 - . ID=CGI_10001194; C34072 GLEAN promoter 16401 16765 0.481548 - . ID=CGI_10001194; C34110 WUBlastX LINE_RTE-X 1096 1863 257 - . . C34110 WUBlastX LINE_RTE-X 1890 2039 82 - . . C34110 WUBlastX LINE_RTE-X 1890 2246 65 - . . C34110 GLEAN mRNA 2583 15463 0.431065 - . ID=CGI_10001212; C34110 TRF Tandem_Repeat 8742 8786 90 + . . C34110 WUBlastX DNA_P 11168 11380 44 + . . C34110 WUBlastX DNA_IS4EU 12150 12776 32 + . . C34110 WUBlastX DNA_Kolobok-IS4 12603 12776 44 + . . C34110 WUBlastX DNA_IS4EU 12772 13209 174 + . . C34110 WUBlastX DNA_IS4EU 12772 13140 181 + . . C34110 WUBlastX DNA_IS4EU 13137 13328 55 + . . C34110 WUBlastX DNA_IS4EU 13655 14392 134 - . . C34110 WUBlastX DNA_IS4EU 13670 14296 208 - . . C34110 WUBlastX DNA_IS4EU 13670 14869 95 - . . C34110 GLEAN promoter 15464 16463 0.431065 - . ID=CGI_10001212; C34110 WUBlastX DNA_IS4EU 16598 16936 109 - . . C34110 WUBlastX DNA_IS4EU 16867 17076 32 - . . C34116 WUBlastX LTR_Gypsy 2302 2520 79 - . . C34116 WUBlastX LTR_Gypsy 2332 2514 82 - . . C34116 WUBlastX LTR_Gypsy 2634 2861 53 - . . C34116 WUBlastX LTR_Gypsy 2814 3314 36 - . . C34116 WUBlastX LTR_Gypsy 2856 3206 60 - . . C34116 WUBlastX LTR_Gypsy 3063 3236 48 - . . C34116 WUBlastX LTR_Gypsy-Cigr 3682 4338 43 - . . C34116 TRF Tandem_Repeat 8465 8507 86 + . . C34116 WUBlastX DNA_Merlin 13944 14837 341 + . . C34116 WUBlastX DNA_IS4EU 15885 16388 186 + . . C34116 WUBlastX DNA_IS4EU 16615 17148 426 - . . C34120 WUBlastX DNA_Sola 4520 4834 111 + . . C34120 WUBlastX DNA_Sola 4577 4885 97 + . . C34120 WUBlastX DNA_Sola 4577 4834 112 + . . C34120 WUBlastX DNA_Maverick 5467 5829 49 + . . C34120 WUBlastX DNA_Maverick 6000 6242 51 + . . C34120 WUBlastX DNA_Maverick 6065 6751 69 + . . C34120 WUBlastX DNA_Maverick 6230 6757 85 + . . C34120 WUBlastX DNA_Maverick 6254 6565 154 + . . C34120 WUBlastX DNA_Maverick 6638 6781 47 + . . C34120 WUBlastX DNA_Maverick 7278 7340 30 + . . C34120 WUBlastX DNA_Maverick 7533 7820 66 - . . C34120 WUBlastX DNA_Maverick 7533 7874 48 - . . C34120 TRF Tandem_Repeat 14274 14301 56 + . . C34120 WUBlastX DNA_TcMar-Tc1 16398 17114 261 - . . C34120 WUBlastX DNA_TcMar-Tc1 16839 17168 32 - . . C34122 TRF Tandem_Repeat 5402 5530 109 + . . C34122 WUBlastX LTR_Gypsy 7592 8218 171 - . . C34122 WUBlastX LTR_Gypsy 7868 8233 282 - . . C34122 TRF Tandem_Repeat 8274 8329 67 + . . C34122 TRF Tandem_Repeat 8274 8326 79 + . . C34122 TRF Tandem_Repeat 8274 8329 85 + . . C34122 WUBlastX LTR_Gypsy 10935 11363 299 - . . C34122 WUBlastX LTR_Gypsy 11348 12016 291 - . . C34122 WUBlastX LTR_Gypsy-Gmr1 12016 12513 310 - . . C34122 WUBlastX LTR_Gypsy 12016 12699 268 - . . C34122 WUBlastX LTR_Gypsy 12802 12909 35 - . . C34122 WUBlastX LTR_Gypsy 13061 13282 21 - . . C34122 WUBlastX LTR_Gypsy 13549 13863 95 - . . C34122 WUBlastX LTR_Gypsy 13639 13974 88 - . . C34122 WUBlastX LTR_Gypsy 13639 13863 114 - . . C34122 TRF Tandem_Repeat 15389 15491 134 + . . C34136 GLEAN promoter 1 163 0.969548 + . ID=CGI_10001217; C34136 GLEAN mRNA 164 16150 0.969548 + . ID=CGI_10001217; C34158 GLEAN mRNA 2958 4651 0.999855 - . ID=CGI_10001221; C34158 GLEAN promoter 4652 5651 0.999855 - . ID=CGI_10001221; C34158 GLEAN mRNA 5726 8250 1 - . ID=CGI_10001222; C34158 GLEAN promoter 8251 9250 1 - . ID=CGI_10001222; C34158 GLEAN mRNA 8394 13250 1 - . ID=CGI_10001223; C34158 GLEAN promoter 12572 13571 0.999674 + . ID=CGI_10001224; C34158 GLEAN promoter 13251 14250 1 - . ID=CGI_10001223; C34158 GLEAN mRNA 13572 16434 0.999674 + . ID=CGI_10001224; C34160 GLEAN mRNA 4682 16759 0.998211 - . ID=CGI_10001225; C34160 GLEAN promoter 16760 17357 0.998211 - . ID=CGI_10001225; C34166 GLEAN promoter 14299 15298 0.6496 + . ID=CGI_10001226; C34166 GLEAN mRNA 15299 16615 0.6496 + . ID=CGI_10001226; C34174 GLEAN promoter 1 75 1 + . ID=CGI_10001231; C34174 GLEAN mRNA 76 880 1 + . ID=CGI_10001231; C34174 TRF Tandem_Repeat 338 419 110 + . . C34174 GLEAN mRNA 745 7629 0.544712 - . ID=CGI_10001232; C34174 WUBlastX LTR_Gypsy 1191 1241 22 + . . C34174 WUBlastX LTR_Ngaro 1252 1449 79 + . . C34174 WUBlastX LTR_Ngaro 1701 1856 45 + . . C34174 WUBlastX LTR_Ngaro 1834 3309 906 + . . C34174 WUBlastX LTR_Ngaro 3294 4232 321 + . . C34174 GLEAN promoter 7630 8629 0.544712 - . ID=CGI_10001232; C34174 WUBlastX LINE_CR1 14593 14928 77 - . . C34174 WUBlastX LINE_CR1 14686 14922 87 - . . C34174 WUBlastX LINE_CR1 14749 14907 98 - . . C34174 WUBlastX LINE_L2 14773 14937 140 - . . C34174 WUBlastX LINE_L2 14949 15263 111 - . . C34174 WUBlastX LINE_CR1 15260 15499 59 - . . C34174 WUBlastX LINE_CR1-L2 15263 15382 68 - . . C34174 WUBlastX LINE_L2 15275 15562 25 - . . C34176 TRF Tandem_Repeat 8197 8242 60 + . . C34176 WUBlastX LTR_Gypsy 11087 11278 28 - . . C34176 WUBlastX LTR_Gypsy 11141 11374 85 - . . C34176 WUBlastX LTR_Gypsy 11263 11988 222 - . . C34176 WUBlastX LTR_Gypsy 11404 12003 380 - . . C34176 WUBlastX LTR_ERV1 11659 12099 142 - . . C34176 WUBlastX LTR_Gypsy 12005 12469 124 - . . C34176 WUBlastX LTR_Gypsy 12047 12712 39 - . . C34176 WUBlastX LTR_ERV1 12626 12802 22 - . . C34176 WUBlastX LTR_Gypsy 12814 12987 92 - . . C34176 WUBlastX LTR_Gypsy-Cigr 12986 14131 787 - . . C34176 WUBlastX LTR_Gypsy 13022 14401 637 - . . C34176 WUBlastX LTR_Gypsy 14576 14737 27 - . . C34176 WUBlastX LTR_Gypsy 14801 14920 24 - . . C34200 WUBlastX LINE_L1-Tx1 454 732 161 - . . C34200 WUBlastX LINE_L1-Tx1 472 891 80 - . . C34200 WUBlastX LINE_L1 903 1142 34 - . . C34200 WUBlastX LINE_L1-Tx1 906 1082 104 - . . C34200 WUBlastX LINE_L1-Tx1 1124 1264 80 - . . C34200 TRF Tandem_Repeat 2177 2298 226 + . . C34200 WUBlastX LINE_L2 2447 2794 23 - . . C34200 GLEAN promoter 2758 3757 0.801776 + . ID=CGI_10001235; C34200 GLEAN mRNA 3758 8663 0.801776 + . ID=CGI_10001235; C34200 GLEAN promoter 7716 8715 0.89017 + . ID=CGI_10001236; C34200 GLEAN mRNA 8716 12036 0.89017 + . ID=CGI_10001236; C34200 TRF Tandem_Repeat 11527 11574 87 + . . C34200 TRF Tandem_Repeat 15818 15915 169 + . . C34208 GLEAN promoter 1892 2891 0.999998 + . ID=CGI_10001244; C34208 GLEAN mRNA 2892 8679 0.999998 + . ID=CGI_10001244; C34208 WUBlastX LINE_RTE-X 15527 15679 51 + . . C34218 WUBlastX RC_Helitron 1 1503 761 - . . C34218 TRF Tandem_Repeat 1510 2150 989 + . . C34218 TRF Tandem_Repeat 1560 2142 253 + . . C34218 WUBlastX RC_Helitron 2239 3042 128 - . . C34218 TRF Tandem_Repeat 3083 3154 62 + . . C34218 TRF Tandem_Repeat 4984 6150 1296 + . . C34218 TRF Tandem_Repeat 4984 6150 1411 + . . C34218 TRF Tandem_Repeat 8801 8858 100 + . . C34218 TRF Tandem_Repeat 8804 8857 65 + . . C34218 TRF Tandem_Repeat 10049 10100 50 + . . C34218 TRF Tandem_Repeat 15206 15270 123 + . . C34226 GLEAN promoter 8292 9291 0.999821 + . ID=CGI_10001246; C34226 GLEAN mRNA 9292 10152 0.999821 + . ID=CGI_10001246; C34250 GLEAN mRNA 2781 14814 0.799249 - . ID=CGI_10001254; C34250 GLEAN promoter 14815 15814 0.799249 - . ID=CGI_10001254; C34250 GLEAN promoter 15103 16102 1 + . ID=CGI_10001255; C34250 GLEAN mRNA 16103 17008 1 + . ID=CGI_10001255; C34256 WUBlastX LTR_Gypsy 1 1671 1263 + . . C34256 TRF Tandem_Repeat 2692 2730 69 + . . C34256 WUBlastX DNA_hAT-Tip100 3007 3210 56 - . . C34256 GLEAN promoter 7451 8450 0.999999 + . ID=CGI_10001257; C34256 GLEAN mRNA 8451 10352 0.999999 + . ID=CGI_10001257; C34256 GLEAN promoter 9416 10415 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 9999 10334 118 + . . C34256 WUBlastX DNA_Kolobok 10014 10295 130 + . . C34256 WUBlastX DNA_Kolobok 10359 10673 89 + . . C34256 WUBlastX DNA_Kolobok 10407 10697 151 + . . C34256 GLEAN mRNA 10416 11159 1 + . ID=CGI_10001258; C34256 WUBlastX DNA_Kolobok 10842 11066 36 + . . C34256 WUBlastX DNA_Kolobok 11007 11147 37 + . . C34256 WUBlastX DNA_Kolobok 11215 11451 57 + . . C34256 WUBlastX DNA_Kolobok 11547 11702 51 + . . C34256 WUBlastX DNA_Kolobok 11547 11738 43 + . . C34256 WUBlastX DNA_Kolobok 11949 12065 26 + . . C34256 WUBlastX DNA_Kolobok 13328 13579 108 - . . C34256 TRF Tandem_Repeat 14738 14808 126 + . . C34256 TRF Tandem_Repeat 16717 16773 114 + . . C34256 TRF Tandem_Repeat 17387 17434 96 + . . C34270 TRF Tandem_Repeat 32 995 1389 + . . C34270 GLEAN mRNA 1937 17133 0.990126 - . ID=CGI_10001262; C34270 WUBlastX DNA_hAT-Blackja 7870 8055 30 + . . C34270 WUBlastX DNA_hAT-Blackja 8147 8533 52 + . . C34270 WUBlastX DNA_hAT-Blackja 8183 8503 55 + . . C34270 GLEAN promoter 17134 17913 0.990126 - . ID=CGI_10001262; C34274 GLEAN mRNA 569 17710 0.865855 - . ID=CGI_10001263; C34274 GLEAN promoter 7996 8995 0.99428 + . ID=CGI_10001264; C34274 GLEAN mRNA 8996 9442 0.99428 + . ID=CGI_10001264; C34274 GLEAN promoter 17711 17929 0.865855 - . ID=CGI_10001263; C34300 GLEAN mRNA 3107 11845 0.514733 - . ID=CGI_10001270; C34300 GLEAN promoter 11846 12845 0.514733 - . ID=CGI_10001270; C34310 WUBlastX DNA_Kolobok-Hyd 730 1104 41 - . . C34310 WUBlastX DNA_Kolobok-Hyd 730 1218 25 - . . C34310 WUBlastX DNA_IS4EU 775 1458 20 - . . C34310 WUBlastX DNA_Kolobok-Hyd 1387 1566 28 - . . C34310 GLEAN mRNA 1727 2596 1 - . ID=CGI_10001274; C34310 GLEAN promoter 2597 3596 1 - . ID=CGI_10001274; C34310 WUBlastX LINE_CR1-L2 12734 13129 65 - . . C34310 WUBlastX LINE_L2 12779 13096 96 - . . C34320 GLEAN mRNA 1619 18115 0.988557 - . ID=CGI_10001281; C34320 GLEAN promoter 18116 18194 0.988557 - . ID=CGI_10001281; C34340 GLEAN mRNA 8476 15050 1 - . ID=CGI_10001287; C34340 GLEAN promoter 15051 16050 1 - . ID=CGI_10001287; C34372 WUBlastX DNA_Helitron 1510 2913 910 + . . C34372 WUBlastX RC_Helitron 2927 3643 231 + . . C34372 TRF Tandem_Repeat 12802 12839 51 + . . C34402 TRF Tandem_Repeat 15208 15351 95 + . . C34402 WUBlastX LTR_Copia 16684 17082 25 + . . C34402 WUBlastX LTR_Gypsy 17257 17403 20 + . . C34402 WUBlastX LTR_Copia 17749 17907 25 + . . C34402 WUBlastX DNA_Maverick 17815 18426 429 + . . C34406 WUBlastX LTR_Pao 10575 10856 41 - . . C34406 WUBlastX LTR_Pao 10650 10871 92 - . . C34406 WUBlastX LTR_Pao 10653 11195 66 - . . C34406 WUBlastX LTR_Pao 11144 11656 138 - . . C34406 WUBlastX LTR_Pao 11222 11656 155 - . . C34406 WUBlastX LTR_Pao 11705 11797 72 - . . C34406 WUBlastX LTR_Pao 11805 12290 268 - . . C34406 WUBlastX LTR_Pao 12156 12332 74 - . . C34406 WUBlastX LTR_Pao 12278 12361 73 - . . C34406 WUBlastX LTR_Pao 12278 12385 72 - . . C34406 WUBlastX LTR_Pao 12318 12521 33 - . . C34406 WUBlastX LTR_Pao 12423 12719 54 - . . C34406 WUBlastX LTR_Pao 12474 12719 56 - . . C34406 WUBlastX LTR_Pao 12750 12956 82 - . . C34406 WUBlastX LTR_Pao 12959 13225 93 - . . C34406 WUBlastX LTR_Pao 13198 13380 93 - . . C34406 WUBlastX LTR_Pao 13565 13882 45 - . . C34408 TRF Tandem_Repeat 532 565 50 + . . C34408 GLEAN promoter 10022 11021 0.91804 + . ID=CGI_10001292; C34408 GLEAN mRNA 11022 14342 0.91804 + . ID=CGI_10001292; C34408 WUBlastX DNA_Harbinger 16534 16602 27 + . . C34408 WUBlastX DNA_Harbinger 17538 17768 27 + . . C34408 WUBlastX LINE_L1-Tx1 17980 18480 87 + . . C34408 WUBlastX LINE_L1-Tx1 18067 18486 331 + . . C34418 GLEAN promoter 792 1791 0.998538 + . ID=CGI_10001293; C34418 GLEAN mRNA 1792 17254 0.998538 + . ID=CGI_10001293; C34436 WUBlastX RC_Helitron 3 974 504 - . . C34436 WUBlastX RC_Helitron 9 1196 187 - . . C34436 WUBlastX RC_Helitron 1173 1427 74 - . . C34436 WUBlastX RC_Helitron 1522 1785 74 - . . C34436 WUBlastX RC_Helitron 1780 1827 35 - . . C34436 GLEAN promoter 4678 5677 0.999934 + . ID=CGI_10001295; C34436 GLEAN mRNA 5678 8936 0.999934 + . ID=CGI_10001295; C34436 WUBlastX DNA_Sola 8265 8492 55 + . . C34436 WUBlastX DNA_NOF? 10223 10348 99 + . . C34436 WUBlastX DNA_NOF? 10344 10535 94 + . . C34436 TRF Tandem_Repeat 11046 11714 636 + . . C34436 WUBlastX DNA_NOF? 13070 13171 92 + . . C34436 WUBlastX DNA_NOF? 13165 13395 199 + . . C34436 WUBlastX DNA_NOF? 13422 13667 23 + . . C34436 GLEAN mRNA 13728 13940 0.999048 - . ID=CGI_10001296; C34436 WUBlastX DNA_NOF? 13941 14216 43 + . . C34436 GLEAN promoter 13941 14940 0.999048 - . ID=CGI_10001296; C34444 GLEAN mRNA 12546 18111 1 - . ID=CGI_10001297; C34444 GLEAN promoter 18112 18675 1 - . ID=CGI_10001297; C34458 WUBlastX LINE_CR1-L2 109 276 33 - . . C34458 WUBlastX LINE_CR1-L2 284 565 110 - . . C34458 WUBlastX LINE_CR1-L2 702 806 28 - . . C34458 WUBlastX LINE_CR1 857 961 22 - . . C34458 GLEAN mRNA 10490 10678 0.866433 - . ID=CGI_10001298; C34458 GLEAN promoter 10679 11678 0.866433 - . ID=CGI_10001298; C34458 WUBlastX LTR_DIRS 10679 10867 52 - . . C34458 WUBlastX LTR_DIRS 11072 11395 76 - . . C34458 WUBlastX LTR_DIRS 12096 12317 54 - . . C34458 WUBlastX LTR_Gypsy 12317 12538 34 - . . C34458 WUBlastX LTR_DIRS 12353 13507 209 - . . C34458 WUBlastX LTR_Gypsy 12860 13672 33 - . . C34458 WUBlastX LTR_DIRS 13658 13711 28 - . . C34458 GLEAN mRNA 14807 18453 1 - . ID=CGI_10001299; C34458 GLEAN promoter 18454 18740 1 - . ID=CGI_10001299; C34464 GLEAN promoter 8741 9740 0.999487 + . ID=CGI_10001300; C34464 GLEAN promoter 9287 10286 0.943481 + . ID=CGI_10001301; C34464 GLEAN mRNA 9741 10256 0.999487 + . ID=CGI_10001300; C34464 GLEAN mRNA 10287 17149 0.943481 + . ID=CGI_10001301; C34464 GLEAN promoter 16796 17795 1 + . ID=CGI_10001302; C34464 GLEAN mRNA 17796 18712 1 + . ID=CGI_10001302; C34466 TRF Tandem_Repeat 6460 6509 100 + . . C34466 TRF Tandem_Repeat 7546 7593 96 + . . C34466 TRF Tandem_Repeat 10885 10930 51 + . . C34466 WUBlastX LTR_Ngaro 11404 12339 390 - . . C34466 WUBlastX LTR_Ngaro 12309 13253 682 - . . C34516 GLEAN mRNA 4572 7781 0.999999 - . ID=CGI_10001305; C34516 GLEAN promoter 7782 8781 0.999999 - . ID=CGI_10001305; C34546 GLEAN mRNA 2511 14767 0.791633 - . ID=CGI_10001308; C34546 TRF Tandem_Repeat 6043 6752 982 + . . C34546 WUBlastX DNA_Zator 7209 7655 147 - . . C34546 TRF Tandem_Repeat 11460 11502 54 + . . C34546 GLEAN promoter 14768 15767 0.791633 - . ID=CGI_10001308; C34546 WUBlastX LINE_CR1 16370 16801 24 - . . C34546 WUBlastX LINE_RTE-X 16637 16801 68 - . . C34546 WUBlastX LINE_RTE-X 16667 16801 97 - . . C34546 WUBlastX LTR_Pao 17339 17416 38 + . . C34546 WUBlastX LTR_Pao 17342 17446 24 + . . C34546 WUBlastX LTR_Pao 18298 18606 184 + . . C34550 GLEAN promoter 460 1459 1 + . ID=CGI_10001310; C34550 GLEAN mRNA 1460 9154 1 + . ID=CGI_10001310; C34550 GLEAN mRNA 11034 17958 1 - . ID=CGI_10001311; C34550 GLEAN promoter 17959 18958 1 - . ID=CGI_10001311; C34552 WUBlastX LINE_RTE-X 6168 6341 29 - . . C34552 WUBlastX LINE_RTE-X 6605 7039 165 - . . C34552 WUBlastX LINE_RTE-X 7036 7326 118 - . . C34552 WUBlastX DNA_Crypton 9844 10086 73 - . . C34552 TRF Tandem_Repeat 10377 10428 104 + . . C34552 WUBlastX DNA_IS4EU 12082 13455 196 + . . C34552 WUBlastX DNA_IS4EU 12622 13455 287 + . . C34552 WUBlastX DNA_IS4EU 12874 13455 302 + . . C34552 WUBlastX DNA_Kolobok-IS4 14164 14256 33 + . . C34552 WUBlastX DNA_IS4EU 14915 15100 45 - . . C34562 WUBlastX LTR_Ngaro 1811 1936 21 + . . C34562 WUBlastX LTR_Ngaro 1933 2814 225 + . . C34562 WUBlastX LTR_Ngaro 2817 2924 40 + . . C34562 WUBlastX LTR_Ngaro 2849 3040 82 + . . C34562 WUBlastX LTR_Ngaro 3031 3180 100 + . . C34562 WUBlastX LTR_Ngaro 5673 6116 93 + . . C34562 WUBlastX DNA_IS4EU 7094 7390 68 + . . C34562 WUBlastX DNA_IS4EU 7305 7736 75 + . . C34562 WUBlastX DNA_IS4EU 7341 7820 38 + . . C34562 WUBlastX DNA_IS4EU 7371 7736 155 + . . C34562 TRF Tandem_Repeat 8516 8729 302 + . . C34562 WUBlastX LTR_Ngaro 9746 10024 87 + . . C34562 WUBlastX LTR_Ngaro 9773 10000 101 + . . C34562 WUBlastX LTR_Ngaro 9773 10069 78 + . . C34562 TRF Tandem_Repeat 11638 12444 1283 + . . C34562 GLEAN promoter 15792 16791 0.999372 + . ID=CGI_10001313; C34562 GLEAN mRNA 16792 17340 0.999372 + . ID=CGI_10001313; C34564 GLEAN promoter 1970 2969 0.354638 + . ID=CGI_10001314; C34564 GLEAN mRNA 2970 15066 0.354638 + . ID=CGI_10001314; C34566 GLEAN promoter 302 1301 1 + . ID=CGI_10001315; C34566 GLEAN mRNA 1302 6093 1 + . ID=CGI_10001315; C34600 GLEAN mRNA 8391 19305 0.999866 - . ID=CGI_10001325; C34600 GLEAN promoter 19306 19480 0.999866 - . ID=CGI_10001325; C34622 TRF Tandem_Repeat 3104 3128 50 + . . C34622 GLEAN promoter 4100 5099 0.557561 + . ID=CGI_10001328; C34622 WUBlastX DNA_Kolobok-IS4 4848 5273 57 + . . C34622 GLEAN mRNA 5100 5956 0.557561 + . ID=CGI_10001328; C34622 GLEAN promoter 11681 12680 0.84036 + . ID=CGI_10001329; C34622 GLEAN mRNA 12681 15156 0.84036 + . ID=CGI_10001329; C34630 WUBlastX DNA_Harbinger 179 355 85 + . . C34630 WUBlastX DNA_Harbinger 322 1041 262 + . . C34630 WUBlastX DNA_Harbinger 328 1194 142 + . . C34630 WUBlastX DNA_TcMar-Tc1 3237 3683 119 - . . C34630 WUBlastX DNA_TcMar-Tc1 3383 3769 75 - . . C34630 WUBlastX DNA_TcMar-Tc1 3769 4233 121 - . . C34630 TRF Tandem_Repeat 6130 6174 81 + . . C34630 WUBlastX DNA_Kolobok 15531 15653 39 + . . C34630 WUBlastX DNA_Kolobok 15731 15814 38 + . . C34630 WUBlastX DNA_Kolobok 15801 15995 25 + . . C34630 WUBlastX DNA_Kolobok 16195 16242 23 + . . C34630 WUBlastX DNA_Kolobok 16366 16458 33 + . . C34630 WUBlastX DNA_Kolobok 16666 16773 32 + . . C34630 GLEAN mRNA 17543 18154 0.968137 - . ID=CGI_10001330; C34630 GLEAN promoter 18155 19154 0.968137 - . ID=CGI_10001330; C34634 TRF Tandem_Repeat 1366 1619 85 + . . C34634 TRF Tandem_Repeat 1366 1598 222 + . . C34634 TRF Tandem_Repeat 1366 1599 197 + . . C34634 TRF Tandem_Repeat 1406 1628 150 + . . C34634 TRF Tandem_Repeat 1408 1620 113 + . . C34634 TRF Tandem_Repeat 1513 1628 89 + . . C34634 WUBlastX LINE_RTE-X 1915 2034 41 - . . C34634 WUBlastX LINE_RTE-X 2265 2492 55 - . . C34634 WUBlastX LINE_Penelope 13921 14448 34 - . . C34636 GLEAN promoter 822 1821 0.999998 + . ID=CGI_10001331; C34636 GLEAN mRNA 1822 16096 0.999998 + . ID=CGI_10001331; C34708 GLEAN promoter 8090 9089 0.997345 + . ID=CGI_10001346; C34708 GLEAN mRNA 9090 9485 0.997345 + . ID=CGI_10001346; C34712 GLEAN promoter 1528 2527 1 + . ID=CGI_10001347; C34712 GLEAN mRNA 2528 11343 1 + . ID=CGI_10001347; C34712 GLEAN mRNA 14136 19266 1 - . ID=CGI_10001348; C34712 GLEAN promoter 19267 20137 1 - . ID=CGI_10001348; C34726 WUBlastX DNA_Maverick 3594 3728 33 - . . C34726 WUBlastX DNA_Maverick 3760 3840 36 - . . C34726 WUBlastX DNA_Maverick 4044 4226 52 - . . C34726 WUBlastX DNA_Maverick 4077 4226 67 - . . C34726 WUBlastX DNA_Maverick 4299 4454 134 - . . C34726 WUBlastX DNA_Maverick 4328 4963 98 - . . C34726 WUBlastX DNA_Maverick 5004 5075 23 - . . C34726 GLEAN mRNA 9188 12912 0.93708 - . ID=CGI_10001353; C34726 WUBlastX DNA_Maverick 9908 10402 42 + . . C34726 WUBlastX DNA_Maverick 9983 10384 229 + . . C34726 GLEAN promoter 12913 13912 0.93708 - . ID=CGI_10001353; C34792 TRF Tandem_Repeat 2580 2643 128 + . . C34792 TRF Tandem_Repeat 2645 2687 77 + . . C34792 TRF Tandem_Repeat 3347 3405 91 + . . C34792 WUBlastX LINE_RTE-X 7560 8603 120 + . . C34792 WUBlastX LINE_RTE-X 7749 8666 192 + . . C34804 WUBlastX DNA_TcMar-Marin 3691 4098 238 - . . C34804 WUBlastX DNA_TcMar-Marin 3694 4185 80 - . . C34804 WUBlastX DNA_TcMar-Marin 4291 4668 186 - . . C34804 WUBlastX DNA_TcMar-Marin 4571 4951 167 - . . C34846 WUBlastX LINE_RTE-X 3 398 124 - . . C34846 WUBlastX LINE_L1-Tx1 484 978 171 - . . C34846 WUBlastX LINE_L1 568 1011 237 - . . C34846 WUBlastX LINE_L2 595 1110 81 - . . C34846 WUBlastX DNA_Zator 16137 16322 61 + . . C34846 TRF Tandem_Repeat 16671 16725 110 + . . C34856 GLEAN promoter 1 130 0.998639 + . ID=CGI_10001362; C34856 GLEAN mRNA 131 10544 0.998639 + . ID=CGI_10001362; C34856 TRF Tandem_Repeat 6167 6204 58 + . . C34856 WUBlastX LINE_L1-Tx1 6317 7141 42 - . . C34856 WUBlastX LINE_L1-Tx1 6488 7117 80 - . . C34856 WUBlastX LTR_Gypsy 7723 7962 53 - . . C34856 WUBlastX LTR_Gypsy 7920 8885 469 - . . C34856 WUBlastX LTR_Gypsy-Cigr 8836 9372 42 + . . C34856 WUBlastX LTR_Gypsy 8860 9027 207 - . . C34856 WUBlastX LTR_Gypsy 9109 9402 129 + . . C34856 WUBlastX LTR_Gypsy 9214 9450 124 + . . C34856 WUBlastX LTR_Gypsy 9229 9402 151 + . . C34856 WUBlastX LTR_Gypsy 9387 9521 106 + . . C34856 WUBlastX LTR_Gypsy 9524 10219 594 + . . C34856 WUBlastX LTR_Gypsy 9539 10372 186 + . . C34856 GLEAN promoter 16423 17422 0.618241 + . ID=CGI_10001363; C34856 GLEAN mRNA 17423 17593 0.618241 + . ID=CGI_10001363; C34856 TRF Tandem_Repeat 20673 20702 60 + . . C34876 GLEAN promoter 1 497 0.615405 + . ID=CGI_10001372; C34876 GLEAN mRNA 498 973 0.615405 + . ID=CGI_10001372; C34876 WUBlastX LINE_L2 12242 12541 37 + . . C34876 WUBlastX LINE_L2 12371 12544 90 + . . C34876 WUBlastX LINE_L2 12544 12672 55 + . . C34876 WUBlastX LINE_L2 12556 12702 34 + . . C34876 WUBlastX LINE_L2 12708 12833 40 + . . C34876 TRF Tandem_Repeat 14131 14173 86 + . . C34884 GLEAN mRNA 11333 19661 1 - . ID=CGI_10001375; C34884 GLEAN promoter 19662 20661 1 - . ID=CGI_10001375; C34948 WUBlastX LINE_Jockey 2862 3875 83 + . . C34948 WUBlastX LINE_RTE-X 3123 3875 412 + . . C34948 WUBlastX LINE_RTE-X 3892 5340 619 + . . C34948 GLEAN mRNA 9843 20017 0.999674 - . ID=CGI_10001382; C34948 GLEAN promoter 20018 21017 0.999674 - . ID=CGI_10001382; C35006 WUBlastX DNA_IS4EU 212 1114 277 + . . C35006 WUBlastX DNA_Kolobok-IS4 362 1099 364 + . . C35006 WUBlastX DNA_IS4EU 1286 1516 42 - . . C35006 WUBlastX DNA_IS4EU 1292 1486 85 - . . C35006 WUBlastX DNA_IS4EU 1349 1549 32 - . . C35006 WUBlastX DNA_IS4EU 1627 1704 38 - . . C35006 GLEAN mRNA 2016 7654 0.999998 - . ID=CGI_10001396; C35006 WUBlastX DNA_IS4EU 2106 2204 29 - . . C35006 WUBlastX DNA_IS4EU 2385 2642 61 - . . C35006 TRF Tandem_Repeat 3135 3173 78 + . . C35006 TRF Tandem_Repeat 4965 5010 92 + . . C35006 GLEAN promoter 7655 8654 0.999998 - . ID=CGI_10001396; C35006 TRF Tandem_Repeat 17151 17183 66 + . . C35028 GLEAN promoter 1 136 0.787793 + . ID=CGI_10001397; C35028 GLEAN mRNA 137 20595 0.787793 + . ID=CGI_10001397; C35042 GLEAN promoter 730 1729 0.391528 + . ID=CGI_10001403; C35042 GLEAN mRNA 1730 15534 0.391528 + . ID=CGI_10001403; C35042 TRF Tandem_Repeat 2956 3000 90 + . . C35042 TRF Tandem_Repeat 3756 3782 54 + . . C35042 TRF Tandem_Repeat 8180 8412 355 + . . C35042 TRF Tandem_Repeat 8183 8406 368 + . . C35042 TRF Tandem_Repeat 8647 8685 51 + . . C35042 WUBlastX LINE_RTE-X 9420 10523 262 - . . C35042 WUBlastX LINE_CR1-L2 12364 12729 58 - . . C35042 WUBlastX LINE_RTE-X 12693 13556 206 + . . C35042 WUBlastX LINE_CR1-L2 13731 13823 63 - . . C35042 WUBlastX LINE_CR1-L2 13737 13847 55 - . . C35068 GLEAN promoter 1139 2138 0.995001 + . ID=CGI_10001414; C35068 GLEAN mRNA 2139 13943 0.995001 + . ID=CGI_10001414; C35068 WUBlastX DNA_hAT-Tip100 4704 4988 40 + . . C35068 WUBlastX DNA_hAT-Tip100 5680 6423 428 + . . C35068 WUBlastX DNA_hAT-Tip100 7296 7610 187 + . . C35068 WUBlastX DNA_hAT-Tip100 7386 7673 76 + . . C35068 TRF Tandem_Repeat 10160 10334 97 + . . C35068 WUBlastX DNA_Harbinger 13095 13280 78 + . . C35068 TRF Tandem_Repeat 15552 16549 1484 + . . C35068 WUBlastX LTR_Copia 17160 17633 187 + . . C35068 WUBlastX LTR_Copia 17226 17597 381 + . . C35134 GLEAN mRNA 562 951 0.999934 - . ID=CGI_10001423; C35134 GLEAN promoter 952 1951 0.999934 - . ID=CGI_10001423; C35134 GLEAN mRNA 1488 1850 0.481159 - . ID=CGI_10001424; C35134 GLEAN promoter 1851 2850 0.481159 - . ID=CGI_10001424; C35134 TRF Tandem_Repeat 15575 16584 1195 + . . C35134 TRF Tandem_Repeat 16754 16803 66 + . . C35134 WUBlastX DNA_TcMar-Tc2 18584 18823 45 - . . C35134 WUBlastX DNA_TcMar-Tc2 18716 18829 47 - . . C35134 WUBlastX DNA_TcMar-Tc2 18828 19088 69 - . . C35134 WUBlastX DNA_TcMar-Tc2 18840 19133 56 - . . C35134 TRF Tandem_Repeat 20674 20754 90 + . . C35160 GLEAN mRNA 6454 8724 1 - . ID=CGI_10001428; C35160 GLEAN promoter 8725 9724 1 - . ID=CGI_10001428; C35160 GLEAN mRNA 20833 22041 1 - . ID=CGI_10001429; C35160 GLEAN promoter 22042 22906 1 - . ID=CGI_10001429; C35168 GLEAN mRNA 767 19543 0.999999 - . ID=CGI_10001430; C35168 TRF Tandem_Repeat 5877 6770 1255 + . . C35168 TRF Tandem_Repeat 8159 8224 80 + . . C35168 TRF Tandem_Repeat 8159 8217 73 + . . C35168 TRF Tandem_Repeat 12919 12968 93 + . . C35168 GLEAN promoter 19544 20543 0.999999 - . ID=CGI_10001430; C35168 WUBlastX LTR_Gypsy 20327 21208 566 + . . C35168 WUBlastX LTR_Gypsy 20339 21529 477 + . . C35168 WUBlastX LTR_Gypsy 21516 22862 1500 + . . C35168 WUBlastX LTR_Gypsy 22746 22916 53 + . . C35172 GLEAN promoter 1 160 0.907032 + . ID=CGI_10001431; C35172 GLEAN mRNA 161 6399 0.907032 + . ID=CGI_10001431; C35172 WUBlastX DNA_En-Spm 1555 3507 411 + . . C35172 WUBlastX DNA_En-Spm 1741 3876 340 + . . C35172 WUBlastX DNA_En-Spm 2254 3498 417 + . . C35172 GLEAN promoter 18604 19603 0.648534 + . ID=CGI_10001432; C35172 GLEAN mRNA 19604 21097 0.648534 + . ID=CGI_10001432; C35260 WUBlastX LINE_L2 1370 1540 59 + . . C35260 WUBlastX LINE_CR1-L2 1430 1540 70 + . . C35260 WUBlastX LINE_L2 1430 1936 61 + . . C35260 GLEAN promoter 1575 2574 0.999337 + . ID=CGI_10001443; C35260 WUBlastX LINE_L2 2014 2238 43 + . . C35260 GLEAN mRNA 2575 18832 0.999337 + . ID=CGI_10001443; C35260 TRF Tandem_Repeat 5676 5752 140 + . . C35260 TRF Tandem_Repeat 6581 7121 317 + . . C35260 TRF Tandem_Repeat 6746 7108 356 + . . C35260 TRF Tandem_Repeat 7373 7406 68 + . . C35260 TRF Tandem_Repeat 13589 13653 121 + . . C35260 TRF Tandem_Repeat 13807 13885 158 + . . C35260 TRF Tandem_Repeat 15122 15168 94 + . . C35260 GLEAN mRNA 19102 19305 1 - . ID=CGI_10001444; C35260 GLEAN promoter 19306 20305 1 - . ID=CGI_10001444; C35262 GLEAN mRNA 5195 10381 0.579412 - . ID=CGI_10001445; C35262 GLEAN promoter 10382 11381 0.579412 - . ID=CGI_10001445; C35262 GLEAN mRNA 15054 17111 0.999984 - . ID=CGI_10001446; C35262 GLEAN promoter 17112 18111 0.999984 - . ID=CGI_10001446; C35262 GLEAN mRNA 18808 21335 1 - . ID=CGI_10001447; C35262 GLEAN promoter 21336 22335 1 - . ID=CGI_10001447; C35282 GLEAN promoter 142 1141 0.999228 + . ID=CGI_10001456; C35282 GLEAN mRNA 1142 2704 0.999228 + . ID=CGI_10001456; C35282 WUBlastX LTR_Gypsy 1406 1957 123 + . . C35282 WUBlastX LTR_Gypsy 1961 2359 107 + . . C35282 WUBlastX LTR_Gypsy 2009 2557 92 + . . C35282 WUBlastX LTR_Gypsy 2030 2407 121 + . . C35282 GLEAN promoter 6043 7042 0.639937 + . ID=CGI_10001457; C35282 GLEAN mRNA 7043 11838 0.639937 + . ID=CGI_10001457; C35282 TRF Tandem_Repeat 7474 7522 98 + . . C35282 GLEAN mRNA 14157 15453 1 - . ID=CGI_10001458; C35282 GLEAN promoter 15454 16453 1 - . ID=CGI_10001458; C35282 TRF Tandem_Repeat 16091 16144 108 + . . C35282 TRF Tandem_Repeat 18187 18304 87 + . . C35282 TRF Tandem_Repeat 18187 18306 108 + . . C35282 TRF Tandem_Repeat 18190 18307 121 + . . C35282 TRF Tandem_Repeat 18195 18307 86 + . . C35282 TRF Tandem_Repeat 18207 18307 84 + . . C35282 GLEAN promoter 19898 20897 1 + . ID=CGI_10001459; C35282 GLEAN mRNA 20898 21914 1 + . ID=CGI_10001459; C353 WUBlastX LTR_Gypsy 3 101 83 + . . C35386 GLEAN promoter 2761 3760 0.999949 + . ID=CGI_10001492; C35386 GLEAN mRNA 3761 22852 0.999949 + . ID=CGI_10001492; C35400 GLEAN promoter 159 1158 0.997062 + . ID=CGI_10001505; C35400 GLEAN mRNA 1159 13223 0.997062 + . ID=CGI_10001505; C35400 GLEAN mRNA 11510 13432 1 - . ID=CGI_10001506; C35400 GLEAN promoter 12659 13658 0.544755 + . ID=CGI_10001507; C35400 GLEAN promoter 13433 14432 1 - . ID=CGI_10001506; C35400 GLEAN mRNA 13659 24277 0.544755 + . ID=CGI_10001507; C35502 WUBlastX LINE_Penelope 10 174 24 + . . C35502 WUBlastX LINE_Penelope 43 738 116 + . . C35502 WUBlastX LINE_Penelope 589 774 42 + . . C35502 GLEAN promoter 3963 4962 0.53982 + . ID=CGI_10001537; C35502 GLEAN mRNA 4963 19527 0.53982 + . ID=CGI_10001537; C35502 TRF Tandem_Repeat 24171 24268 153 + . . C35532 WUBlastX RC_Helitron 1834 2409 80 - . . C35532 WUBlastX RC_Helitron 4253 4651 77 - . . C35532 GLEAN mRNA 11931 21500 0.999947 - . ID=CGI_10001547; C35532 WUBlastX LTR_Ngaro 12355 13257 381 - . . C35532 WUBlastX LTR_Ngaro 13260 14828 960 - . . C35532 WUBlastX LTR_Ngaro 15036 15524 34 - . . C35532 WUBlastX LTR_Ngaro 15177 15908 178 - . . C35532 TRF Tandem_Repeat 17574 17609 72 + . . C35532 GLEAN promoter 21501 22500 0.999947 - . ID=CGI_10001547; C35532 WUBlastX LINE_RTE-BovB 21574 22308 169 + . . C35532 WUBlastX LINE_RTE-BovB 21688 22383 184 + . . C35532 WUBlastX LINE_RTE-BovB 21736 22308 371 + . . C35532 TRF Tandem_Repeat 22401 23489 1822 + . . C35532 WUBlastX LINE_L1 23526 23576 24 + . . C35532 WUBlastX LINE_RTE-BovB 23561 24331 456 + . . C35532 WUBlastX LINE_RTE-BovB 24349 25371 856 + . . C35548 GLEAN promoter 11842 12841 0.920772 + . ID=CGI_10001549; C35548 GLEAN mRNA 12842 23964 0.920772 + . ID=CGI_10001549; C3555 WUBlastX LTR_Pao 1 114 93 - . . C35556 GLEAN promoter 617 1616 1 + . ID=CGI_10001550; C35556 GLEAN mRNA 1617 5640 1 + . ID=CGI_10001550; C35556 GLEAN promoter 4682 5681 1 + . ID=CGI_10001551; C35556 GLEAN mRNA 5682 9417 1 + . ID=CGI_10001551; C35556 GLEAN promoter 8862 9861 1 + . ID=CGI_10001552; C35556 GLEAN mRNA 9862 16016 1 + . ID=CGI_10001552; C35556 GLEAN mRNA 16793 20175 0.999833 - . ID=CGI_10001553; C35556 GLEAN promoter 20176 21175 0.999833 - . ID=CGI_10001553; C35556 GLEAN mRNA 23012 25016 0.999821 - . ID=CGI_10001554; C35556 GLEAN promoter 25017 25556 0.999821 - . ID=CGI_10001554; C35564 GLEAN mRNA 3333 14890 0.885959 - . ID=CGI_10001562; C35564 GLEAN promoter 14891 15890 0.885959 - . ID=CGI_10001562; C35606 WUBlastX DNA_Crypton 492 905 119 - . . C35606 WUBlastX DNA_Crypton 1017 1187 63 - . . C35606 WUBlastX DNA_Crypton 1548 1883 106 - . . C35606 WUBlastX LTR_Gypsy 6168 6896 34 - . . C35606 WUBlastX LTR_Gypsy 6357 6902 175 - . . C35606 WUBlastX LTR_Gypsy 6477 6902 201 - . . C35606 WUBlastX LTR_Gypsy 6871 7476 539 - . . C35606 WUBlastX LTR_Copia 7111 7554 65 - . . C35606 TRF Tandem_Repeat 15623 15670 51 + . . C35606 TRF Tandem_Repeat 15937 15987 50 + . . C35606 TRF Tandem_Repeat 19563 19609 94 + . . C35646 GLEAN promoter 1 88 0.579463 + . ID=CGI_10001578; C35646 GLEAN mRNA 89 994 0.579463 + . ID=CGI_10001578; C35646 GLEAN mRNA 2961 4334 0.449004 - . ID=CGI_10001579; C35646 GLEAN promoter 4335 5334 0.449004 - . ID=CGI_10001579; C35646 GLEAN promoter 13074 14073 0.813078 + . ID=CGI_10001580; C35646 GLEAN mRNA 14074 15381 0.813078 + . ID=CGI_10001580; C35646 GLEAN promoter 23344 24343 0.836199 + . ID=CGI_10001581; C35646 GLEAN mRNA 24344 25945 0.836199 + . ID=CGI_10001581; C35716 TRF Tandem_Repeat 434 489 112 + . . C35716 TRF Tandem_Repeat 2167 2312 172 + . . C35716 TRF Tandem_Repeat 10244 10342 67 + . . C35716 WUBlastX DNA_IS4EU 15296 15640 163 - . . C35716 WUBlastX DNA_IS4EU 15808 15942 32 - . . C35716 WUBlastX DNA_IS4EU 16578 16952 210 + . . C35716 WUBlastX DNA_Kolobok-IS4 16973 17275 71 + . . C35716 WUBlastX DNA_IS4EU 16994 17248 116 + . . C35716 WUBlastX DNA_IS4EU 17617 17835 47 - . . C35716 WUBlastX DNA_IS4EU 18280 18414 86 - . . C35716 TRF Tandem_Repeat 26564 26601 60 + . . C35760 WUBlastX DNA_MuDR 10685 10930 100 - . . C35760 TRF Tandem_Repeat 11213 11262 77 + . . C35760 TRF Tandem_Repeat 11252 11292 50 + . . C35760 TRF Tandem_Repeat 12140 12242 102 + . . C35760 TRF Tandem_Repeat 12151 12256 81 + . . C35760 WUBlastX LTR_Gypsy 13323 13673 99 - . . C35760 WUBlastX LTR_Gypsy 13380 13691 278 - . . C35760 WUBlastX LTR_Gypsy 13380 13757 132 - . . C35760 TRF Tandem_Repeat 14228 15034 992 + . . C35760 WUBlastX LTR_Copia 22274 22390 22 - . . C35760 WUBlastX LTR_Gypsy 22355 25183 1609 - . . C35760 WUBlastX LTR_Gypsy 25189 26556 534 - . . C35760 WUBlastX LTR_Gypsy 26242 26613 26 - . . C35760 WUBlastX LTR_Gypsy 26922 27404 125 - . . C35776 GLEAN promoter 2258 3257 0.999572 + . ID=CGI_10001603; C35776 GLEAN mRNA 3258 6598 0.999572 + . ID=CGI_10001603; C35776 GLEAN mRNA 14274 26767 1 - . ID=CGI_10001604; C35776 GLEAN promoter 26768 27620 1 - . ID=CGI_10001604; C35786 TRF Tandem_Repeat 650 689 80 + . . C35786 TRF Tandem_Repeat 14072 14142 103 + . . C35786 WUBlastX LINE_L1-Tx1 14149 14535 38 - . . C35786 WUBlastX LINE_L1-Tx1 14603 14740 26 - . . C35786 WUBlastX LINE_L1-Tx1 14907 15014 28 - . . C35786 WUBlastX LINE_L1 14992 15069 25 - . . C35786 WUBlastX LINE_L1-Tx1 15086 15520 128 - . . C35786 WUBlastX LINE_L1 15269 15994 207 - . . C35786 WUBlastX LINE_L1-Tx1 15467 15994 284 - . . C35786 WUBlastX LINE_L1-Tx1 16003 16245 136 - . . C35786 WUBlastX LINE_L1 16389 16439 21 - . . C35786 GLEAN promoter 22102 23101 0.482377 + . ID=CGI_10001606; C35786 GLEAN promoter 23036 24035 1 + . ID=CGI_10001607; C35786 GLEAN mRNA 23102 23661 0.482377 + . ID=CGI_10001606; C35786 GLEAN mRNA 24036 25239 1 + . ID=CGI_10001607; C35794 TRF Tandem_Repeat 5428 5479 104 + . . C35794 WUBlastX LTR_Pao 7964 9538 463 + . . C35794 WUBlastX LTR_Pao 8267 9502 479 + . . C35794 WUBlastX LTR_Pao 8570 9502 504 + . . C35794 WUBlastX LTR_Pao 9569 9967 238 + . . C35794 WUBlastX LTR_Pao 9982 12078 1560 + . . C35794 WUBlastX LTR_Pao 11740 12141 66 + . . C35794 WUBlastX LINE_CR1 12060 12158 28 - . . C35794 WUBlastX LINE_CR1 12890 13183 29 - . . C35794 WUBlastX LINE_CR1 12935 13183 64 - . . C35794 WUBlastX LINE_L2 12974 13183 84 - . . C35794 WUBlastX LINE_L2 13174 13575 60 - . . C35794 WUBlastX LINE_L2 13174 13443 118 - . . C35794 WUBlastX LINE_L2 13174 13491 111 - . . C35794 WUBlastX LINE_L2 14013 14249 44 - . . C35794 WUBlastX LINE_L2 14121 14249 52 - . . C35794 WUBlastX LINE_L2 14142 14291 25 - . . C35794 WUBlastX LINE_L2 14142 14249 55 - . . C35794 WUBlastX LINE_L2 14339 15178 131 - . . C35794 WUBlastX LINE_L2 14477 15241 142 - . . C35794 GLEAN promoter 16656 17655 0.89722 + . ID=CGI_10001608; C35794 GLEAN mRNA 17656 23529 0.89722 + . ID=CGI_10001608; C35794 GLEAN mRNA 25213 26506 1 - . ID=CGI_10001609; C35794 GLEAN promoter 26507 27506 1 - . ID=CGI_10001609; C35794 TRF Tandem_Repeat 27440 27714 236 + . . C35840 WUBlastX DNA_Harbinger 610 825 32 - . . C35840 GLEAN mRNA 655 3933 0.500738 - . ID=CGI_10001630; C35840 WUBlastX DNA_Harbinger 709 846 28 - . . C35840 WUBlastX DNA_Harbinger 712 825 46 - . . C35840 WUBlastX DNA_Harbinger 1285 1554 194 - . . C35840 WUBlastX DNA_Harbinger 1641 1814 76 - . . C35840 WUBlastX DNA_Harbinger 1641 1865 66 - . . C35840 WUBlastX DNA_Harbinger 1813 2010 59 - . . C35840 WUBlastX DNA_Harbinger 3715 3924 29 - . . C35840 GLEAN promoter 3934 4933 0.500738 - . ID=CGI_10001630; C35840 TRF Tandem_Repeat 15786 15821 72 + . . C35840 TRF Tandem_Repeat 23646 23674 58 + . . C35844 GLEAN promoter 7303 8302 0.934054 + . ID=CGI_10001631; C35844 GLEAN mRNA 8303 22667 0.934054 + . ID=CGI_10001631; C35952 GLEAN promoter 1 194 0.544487 + . ID=CGI_10001669; C35952 GLEAN mRNA 195 8083 0.544487 + . ID=CGI_10001669; C35952 WUBlastX DNA_Sola 436 714 47 + . . C35952 WUBlastX DNA_Sola 448 651 69 + . . C35952 WUBlastX RC_Helitron 1398 1592 66 + . . C35952 WUBlastX DNA_Helitron 1577 1981 154 + . . C35952 WUBlastX DNA_Helitron 1983 2360 44 + . . C35952 WUBlastX LINE_L2 2310 2672 52 + . . C35952 WUBlastX LINE_L2 2451 2720 56 + . . C35952 WUBlastX LINE_L2 2481 2780 45 + . . C35952 WUBlastX LINE_L2 2672 2842 36 + . . C35952 WUBlastX LINE_L2 3402 3497 20 + . . C35952 WUBlastX LINE_L2 3484 3567 20 + . . C35952 WUBlastX LTR_DIRS 18121 18708 285 + . . C35952 WUBlastX LTR_DIRS 18708 18980 142 + . . C35952 WUBlastX LTR_DIRS 18708 19058 92 + . . C35952 WUBlastX LTR_DIRS 18964 19167 48 + . . C35952 WUBlastX LTR_DIRS 19200 20222 782 + . . C35992 GLEAN promoter 3987 4986 1 + . ID=CGI_10001716; C35992 GLEAN mRNA 4987 11585 1 + . ID=CGI_10001716; C35992 GLEAN mRNA 12644 14751 1 - . ID=CGI_10001717; C35992 GLEAN promoter 14752 15751 1 - . ID=CGI_10001717; C35992 GLEAN mRNA 18808 28071 0.999993 - . ID=CGI_10001718; C35992 GLEAN promoter 28072 29071 0.999993 - . ID=CGI_10001718; C36000 GLEAN promoter 105 1104 0.867558 + . ID=CGI_10001722; C36000 GLEAN mRNA 1105 4133 0.867558 + . ID=CGI_10001722; C36000 GLEAN promoter 11367 12366 0.495824 + . ID=CGI_10001725; C36000 GLEAN mRNA 12367 13407 0.495824 + . ID=CGI_10001725; C36000 GLEAN promoter 12485 13484 0.995237 + . ID=CGI_10001726; C36000 GLEAN mRNA 13485 14357 0.995237 + . ID=CGI_10001726; C36000 GLEAN mRNA 18485 19051 0.69447 - . ID=CGI_10001729; C36000 GLEAN promoter 19052 20051 0.69447 - . ID=CGI_10001729; C36000 GLEAN mRNA 19341 20810 0.999661 - . ID=CGI_10001730; C36000 GLEAN promoter 20174 21173 0.940215 + . ID=CGI_10001731; C36000 GLEAN promoter 20811 21810 0.999661 - . ID=CGI_10001730; C36000 GLEAN mRNA 21174 23549 0.940215 + . ID=CGI_10001731; C36000 GLEAN promoter 22610 23609 1 + . ID=CGI_10001732; C36000 GLEAN mRNA 23610 25457 1 + . ID=CGI_10001732; C36014 GLEAN mRNA 2781 4853 0.999998 - . ID=CGI_10001734; C36014 GLEAN promoter 4854 5853 0.999998 - . ID=CGI_10001734; C36014 TRF Tandem_Repeat 6733 6859 66 + . . C36014 GLEAN mRNA 7318 18174 0.998089 - . ID=CGI_10001735; C36014 TRF Tandem_Repeat 10994 11030 74 + . . C36014 GLEAN promoter 18175 19174 0.998089 - . ID=CGI_10001735; C36014 GLEAN mRNA 20665 22221 0.996039 - . ID=CGI_10001736; C36014 GLEAN promoter 22222 23221 0.996039 - . ID=CGI_10001736; C36014 GLEAN mRNA 22609 26044 0.789576 - . ID=CGI_10001737; C36014 TRF Tandem_Repeat 24398 24432 54 + . . C36014 GLEAN promoter 26045 27044 0.789576 - . ID=CGI_10001737; C36014 WUBlastX DNA_TcMar-Tc2 27762 28031 141 - . . C36014 WUBlastX DNA_TcMar-Tc2 28004 28273 103 - . . C36014 WUBlastX DNA_TcMar-Tc2 28004 28228 122 - . . C36014 WUBlastX DNA_TcMar-Tc2 28045 28443 76 - . . C36014 WUBlastX DNA_TcMar-Tc2 28470 28598 21 - . . C36014 WUBlastX DNA_TcMar-Tc2 28491 28601 33 - . . C36028 TRF Tandem_Repeat 4256 4282 54 + . . C36028 TRF Tandem_Repeat 5528 5851 220 + . . C36028 TRF Tandem_Repeat 5720 5939 136 + . . C36028 TRF Tandem_Repeat 5720 5928 122 + . . C36028 TRF Tandem_Repeat 9147 9180 50 + . . C36028 TRF Tandem_Repeat 13197 13274 79 + . . C36028 GLEAN mRNA 14777 25188 0.63754 - . ID=CGI_10001743; C36028 TRF Tandem_Repeat 20052 20110 118 + . . C36028 GLEAN promoter 25189 26188 0.63754 - . ID=CGI_10001743; C36028 GLEAN promoter 27396 28395 0.694438 + . ID=CGI_10001744; C36028 GLEAN mRNA 28396 30132 0.694438 + . ID=CGI_10001744; C36028 WUBlastX LINE_RTE-X 28465 28848 51 + . . C36028 WUBlastX LINE_RTE-X 29041 30036 100 + . . C36038 GLEAN promoter 1 140 0.920329 + . ID=CGI_10001749; C36038 GLEAN mRNA 141 1866 0.920329 + . ID=CGI_10001749; C36038 TRF Tandem_Repeat 4117 4224 67 + . . C36038 TRF Tandem_Repeat 9183 9231 98 + . . C36038 WUBlastX LTR_Copia 16353 16583 22 - . . C36038 WUBlastX LTR_Gypsy 16401 17564 1027 - . . C36038 WUBlastX LTR_Gypsy 17561 18370 629 - . . C36038 WUBlastX LTR_Gypsy 18391 20265 1474 - . . C36038 WUBlastX LTR_Gypsy 20388 20615 36 - . . C36038 WUBlastX LTR_Gypsy 20599 20688 48 - . . C36038 WUBlastX LTR_Gypsy 20663 21172 257 - . . C36038 TRF Tandem_Repeat 23332 23368 74 + . . C36038 TRF Tandem_Repeat 29670 29723 99 + . . C36172 WUBlastX DNA_IS4EU 1 420 103 - . . C36172 WUBlastX DNA_IS4EU 983 1069 46 - . . C36172 GLEAN promoter 1108 2107 0.942163 + . ID=CGI_10001813; C36172 WUBlastX DNA_IS4EU 1382 1591 69 - . . C36172 GLEAN mRNA 2108 12725 0.942163 + . ID=CGI_10001813; C36172 TRF Tandem_Repeat 6944 7353 186 + . . C36172 TRF Tandem_Repeat 7001 7259 238 + . . C36172 TRF Tandem_Repeat 7001 7259 301 + . . C36172 TRF Tandem_Repeat 7690 7890 176 + . . C36172 TRF Tandem_Repeat 9221 9245 50 + . . C36172 GLEAN promoter 17067 18066 0.977766 + . ID=CGI_10001814; C36172 TRF Tandem_Repeat 17405 17445 82 + . . C36172 GLEAN mRNA 18067 23037 0.977766 + . ID=CGI_10001814; C36172 TRF Tandem_Repeat 20241 20307 134 + . . C36172 TRF Tandem_Repeat 21132 21227 71 + . . C36172 GLEAN promoter 25045 26044 0.728418 + . ID=CGI_10001815; C36172 GLEAN mRNA 26045 28283 0.728418 + . ID=CGI_10001815; C36322 GLEAN promoter 3794 4793 0.992059 + . ID=CGI_10001855; C36322 GLEAN mRNA 4794 16846 0.992059 + . ID=CGI_10001855; C36322 GLEAN mRNA 21801 24681 0.453591 - . ID=CGI_10001856; C36322 GLEAN promoter 24682 25681 0.453591 - . ID=CGI_10001856; C36322 GLEAN mRNA 24934 29302 0.595341 - . ID=CGI_10001857; C36322 GLEAN promoter 29303 30302 0.595341 - . ID=CGI_10001857; C36530 WUBlastX DNA_IS 543 1331 1344 + . . C36530 GLEAN mRNA 1786 2547 0.999372 - . ID=CGI_10001989; C36530 GLEAN promoter 2548 3547 0.999372 - . ID=CGI_10001989; C36530 GLEAN mRNA 2730 3620 0.55185 - . ID=CGI_10001990; C36530 GLEAN promoter 3621 4620 0.55185 - . ID=CGI_10001990; C36530 GLEAN mRNA 8967 9659 0.999992 - . ID=CGI_10001991; C36530 GLEAN promoter 9660 10659 0.999992 - . ID=CGI_10001991; C36530 GLEAN mRNA 10399 11082 0.999999 - . ID=CGI_10001993; C36530 GLEAN promoter 11083 12082 0.999999 - . ID=CGI_10001993; C36530 GLEAN promoter 11794 12793 0.557842 + . ID=CGI_10001995; C36530 GLEAN promoter 12148 13147 0.999994 + . ID=CGI_10001996; C36530 GLEAN mRNA 12794 13102 0.557842 + . ID=CGI_10001995; C36530 GLEAN mRNA 13148 14341 0.999994 + . ID=CGI_10001996; C36530 GLEAN promoter 13404 14403 0.503347 + . ID=CGI_10001997; C36530 GLEAN mRNA 14404 17496 0.503347 + . ID=CGI_10001997; C36530 GLEAN promoter 16748 17747 0.999998 + . ID=CGI_10001998; C36530 GLEAN mRNA 17748 18974 0.999998 + . ID=CGI_10001998; C36530 GLEAN mRNA 20410 21063 1 - . ID=CGI_10002000; C36530 GLEAN promoter 21064 22063 1 - . ID=CGI_10002000; C36530 GLEAN mRNA 21904 23022 0.980668 - . ID=CGI_10002001; C36530 GLEAN promoter 23023 24022 0.980668 - . ID=CGI_10002001; C36530 WUBlastX DNA_IS 23692 24786 1756 + . . C36530 WUBlastX DNA_IS 24764 24976 314 + . . C36530 GLEAN mRNA 25893 28187 0.412491 - . ID=CGI_10002002; C36530 GLEAN promoter 27454 28453 0.999984 + . ID=CGI_10002003; C36530 GLEAN promoter 28188 29187 0.412491 - . ID=CGI_10002002; C36530 GLEAN mRNA 28454 29578 0.999984 + . ID=CGI_10002003; C36530 GLEAN promoter 28670 29669 0.999477 + . ID=CGI_10002004; C36530 GLEAN mRNA 29670 33677 0.999477 + . ID=CGI_10002004; C36530 WUBlastX DNA_hAT-hATw 34187 34636 42 + . . C36530 GLEAN mRNA 35023 35670 0.69447 - . ID=CGI_10002006; C36530 GLEAN promoter 35671 35718 0.69447 - . ID=CGI_10002006; C36636 GLEAN promoter 523 1522 1 + . ID=CGI_10002026; C36636 GLEAN mRNA 1523 3839 1 + . ID=CGI_10002026; C36636 GLEAN mRNA 6957 16369 0.999676 - . ID=CGI_10002027; C36636 GLEAN promoter 16370 17369 0.999676 - . ID=CGI_10002027; C36636 GLEAN promoter 17981 18980 1 + . ID=CGI_10002028; C36636 GLEAN mRNA 18981 26474 1 + . ID=CGI_10002028; C36636 GLEAN mRNA 27911 28713 0.996199 - . ID=CGI_10002029; C36636 GLEAN promoter 28714 29713 0.996199 - . ID=CGI_10002029; C36636 GLEAN promoter 31058 32057 0.999938 + . ID=CGI_10002030; C36636 GLEAN mRNA 32058 33378 0.999938 + . ID=CGI_10002030; C36680 TRF Tandem_Repeat 1 42 84 + . . C36680 TRF Tandem_Repeat 2120 2165 92 + . . C36680 GLEAN mRNA 2216 22548 0.727902 - . ID=CGI_10002070; C36680 WUBlastX LINE_CR1 8507 8938 51 - . . C36680 WUBlastX LINE_CR1 8669 8938 92 - . . C36680 WUBlastX LINE_CR1 8898 9581 120 - . . C36680 WUBlastX LINE_CR1 9207 9587 182 - . . C36680 WUBlastX LINE_CR1 9303 9650 80 - . . C36680 WUBlastX LINE_CR1 9659 9832 106 - . . C36680 WUBlastX LINE_CR1 9674 9937 73 - . . C36680 WUBlastX LINE_CR1 9894 9986 24 - . . C36680 WUBlastX LINE_CR1 9988 10233 67 - . . C36680 WUBlastX LINE_CR1 10021 10293 31 - . . C36680 WUBlastX LINE_L2 10355 10420 21 - . . C36680 WUBlastX LINE_CR1 10593 10742 37 - . . C36680 WUBlastX LINE_CR1 10596 10697 68 - . . C36680 WUBlastX LINE_CR1 10720 11013 56 - . . C36680 TRF Tandem_Repeat 17756 17797 84 + . . C36680 TRF Tandem_Repeat 17799 17851 106 + . . C36680 GLEAN promoter 22549 23548 0.727902 - . ID=CGI_10002070; C36680 GLEAN mRNA 26214 33640 0.999351 - . ID=CGI_10002071; C36680 GLEAN promoter 29417 30416 0.999176 + . ID=CGI_10002072; C36680 GLEAN mRNA 30417 37051 0.999176 + . ID=CGI_10002072; C36680 TRF Tandem_Repeat 33119 33168 100 + . . C36680 GLEAN promoter 33641 34640 0.999351 - . ID=CGI_10002071; C36680 TRF Tandem_Repeat 35248 35329 121 + . . C36686 GLEAN mRNA 5011 5835 0.991266 - . ID=CGI_10002078; C36686 GLEAN promoter 5836 6835 0.991266 - . ID=CGI_10002078; C36686 GLEAN mRNA 6585 8187 0.898044 - . ID=CGI_10002080; C36686 GLEAN promoter 8188 9187 0.898044 - . ID=CGI_10002080; C36686 GLEAN mRNA 8233 10245 0.508911 - . ID=CGI_10002081; C36686 GLEAN promoter 10246 11245 0.508911 - . ID=CGI_10002081; C36686 GLEAN mRNA 10825 12039 0.69447 - . ID=CGI_10002082; C36686 GLEAN promoter 12040 13039 0.69447 - . ID=CGI_10002082; C36686 GLEAN promoter 24696 25695 0.999356 + . ID=CGI_10002089; C36686 GLEAN mRNA 25696 27030 0.999356 + . ID=CGI_10002089; C36686 GLEAN mRNA 27718 28155 0.992405 - . ID=CGI_10002090; C36686 GLEAN promoter 28156 29155 0.992405 - . ID=CGI_10002090; C36686 GLEAN mRNA 28378 30437 0.99239 - . ID=CGI_10002091; C36686 GLEAN promoter 30438 31437 0.99239 - . ID=CGI_10002091; C36686 GLEAN mRNA 32283 34094 0.999982 - . ID=CGI_10002094; C36686 GLEAN promoter 34095 35094 0.999982 - . ID=CGI_10002094; C37024 GLEAN mRNA 614 13950 1 - . ID=CGI_10002228; C37024 GLEAN promoter 13951 14950 1 - . ID=CGI_10002228; C37024 GLEAN promoter 15918 16917 0.937763 + . ID=CGI_10002229; C37024 GLEAN mRNA 16918 18685 0.937763 + . ID=CGI_10002229; C37024 GLEAN mRNA 28559 35439 0.997661 - . ID=CGI_10002230; C37024 GLEAN promoter 34658 35657 1 + . ID=CGI_10002231; C37024 GLEAN promoter 35440 36439 0.997661 - . ID=CGI_10002230; C37024 GLEAN mRNA 35658 39369 1 + . ID=CGI_10002231; C37392 WUBlastX LINE_L1-Tx1 3 1037 545 - . . C37392 WUBlastX LINE_L1-Tx1 1033 1626 292 - . . C37392 TRF Tandem_Repeat 9222 10422 1379 + . . C37392 TRF Tandem_Repeat 10442 11480 1215 + . . C37392 TRF Tandem_Repeat 12932 12976 90 + . . C37392 WUBlastX DNA_TcMar-Marin 17103 17639 123 - . . C37392 GLEAN mRNA 20925 22974 1 - . ID=CGI_10002353; C37392 GLEAN promoter 22975 23974 1 - . ID=CGI_10002353; C37392 TRF Tandem_Repeat 26360 26902 632 + . . C37392 TRF Tandem_Repeat 41765 41846 148 + . . C3813 WUBlastX LTR_Gypsy 14 115 77 - . . C3873 WUBlastX LTR_Gypsy 4 114 79 - . . C389 WUBlastX LTR_DIRS 3 101 34 + . . C3957 WUBlastX LTR_Copia 2 115 77 - . . C4529 WUBlastX LTR_Pao 1 117 102 + . . C4719 WUBlastX LTR_Gypsy 1 117 74 - . . C4757 WUBlastX LTR_Gypsy 2 112 101 - . . C4807 WUBlastX LTR_Gypsy 3 119 83 - . . C4959 WUBlastX LINE_L1-Tx1 1 120 65 + . . C5335 WUBlastX LINE_RTE-X 1 123 74 + . . C5537 WUBlastX LTR_Pao 7 123 97 + . . C5669 WUBlastX LINE_L1-Tx1 4 123 99 + . . C6047 WUBlastX LINE_RTE-BovB 1 123 64 + . . C6241 WUBlastX LTR_Gypsy 2 127 123 + . . C6563 WUBlastX RC_Helitron 3 128 95 + . . C6573 WUBlastX LINE_RTE-X 2 127 67 - . . C6801 WUBlastX LTR_Gypsy 3 86 80 - . . C6987 WUBlastX LTR_Gypsy 1 129 100 - . . C7307 WUBlastX LINE_RTE-X 3 131 72 + . . C7323 WUBlastX LTR_DIRS 3 128 73 + . . C7555 WUBlastX LTR_Gypsy 3 134 142 + . . C7615 WUBlastX LTR_Gypsy 3 134 118 - . . C8047 WUBlastX LTR_Gypsy 6 137 130 - . . C8127 WUBlastX LINE_L1-Tx1 8 115 47 - . . C8225 WUBlastX DNA_PiggyBac 3 134 146 + . . C8377 WUBlastX LINE_Penelope 2 130 102 + . . C8531 WUBlastX LTR_Gypsy 2 139 152 + . . C8543 WUBlastX LTR_Gypsy 6 83 54 - . . C8543 WUBlastX LTR_Gypsy 85 138 23 - . . C8775 WUBlastX LINE_Penelope 2 142 76 + . . C8781 WUBlastX LTR_Gypsy 2 142 151 + . . C885 WUBlastX LINE_RTE-BovB 2 103 63 - . . C8897 WUBlastX LTR_Pao 1 144 91 + . . C9065 WUBlastX DNA_TcMar-Fot1 12 140 85 - . . C9099 WUBlastX LINE_L1-Tx1 2 145 127 - . . C9171 WUBlastX LINE_L1-Tx1 20 145 107 + . . C9323 WUBlastX LTR_Copia 11 142 96 + . . C9353 WUBlastX LTR_Gypsy 2 148 139 + . . C9823 WUBlastX LTR_Pao 1 153 119 - . . scaffold1 TRF Tandem_Repeat 12513 12553 82 + . . scaffold1 GLEAN promoter 17572 18571 1 + . ID=CGI_10013462; scaffold1 GLEAN mRNA 18572 20444 1 + . ID=CGI_10013462; scaffold1 GLEAN mRNA 21219 34733 0.99696 - . ID=CGI_10013463; scaffold1 TRF Tandem_Repeat 25683 25723 50 + . . scaffold1 GLEAN promoter 34734 35733 0.99696 - . ID=CGI_10013463; scaffold1 TRF Tandem_Repeat 37154 37183 60 + . . scaffold1 GLEAN promoter 40945 41944 0.875418 + . ID=CGI_10013464; scaffold1 GLEAN mRNA 41945 55530 0.875418 + . ID=CGI_10013464; scaffold1 GLEAN mRNA 52348 55641 0.818019 - . ID=CGI_10013465; scaffold1 GLEAN promoter 55642 56641 0.818019 - . ID=CGI_10013465; scaffold1 GLEAN promoter 59419 60418 0.999372 + . ID=CGI_10013466; scaffold1 GLEAN mRNA 60419 60598 0.999372 + . ID=CGI_10013466; scaffold1 TRF Tandem_Repeat 63165 63204 80 + . . scaffold1 TRF Tandem_Repeat 63328 63407 115 + . . scaffold1 GLEAN mRNA 69462 70049 0.531615 - . ID=CGI_10013467; scaffold1 GLEAN promoter 70050 71049 0.531615 - . ID=CGI_10013467; scaffold1 GLEAN promoter 71840 72839 1 + . ID=CGI_10013468; scaffold1 GLEAN mRNA 72840 76012 1 + . ID=CGI_10013468; scaffold1 TRF Tandem_Repeat 74766 74794 58 + . . scaffold1 TRF Tandem_Repeat 85814 85864 102 + . . scaffold1 TRF Tandem_Repeat 91967 92079 72 + . . scaffold1 TRF Tandem_Repeat 92029 92078 66 + . . scaffold1 TRF Tandem_Repeat 92453 92488 54 + . . scaffold1 TRF Tandem_Repeat 95834 95877 88 + . . scaffold1 TRF Tandem_Repeat 101478 101594 155 + . . scaffold1 TRF Tandem_Repeat 101478 101858 202 + . . scaffold1 TRF Tandem_Repeat 101478 101858 206 + . . scaffold1 TRF Tandem_Repeat 101593 101750 127 + . . scaffold1 TRF Tandem_Repeat 101606 101858 123 + . . scaffold1 WUBlastX DNA_TcMar-Tc1 103713 103808 44 - . . scaffold1 WUBlastX DNA_TcMar-Tc1 103796 104005 82 - . . scaffold1 WUBlastX DNA_TcMar-Tc1 103858 104169 88 - . . scaffold1 WUBlastX DNA_TcMar-Tc1 103936 104220 142 - . . scaffold1 TRF Tandem_Repeat 104572 104659 117 + . . scaffold1 WUBlastX DNA_TcMar-Tc1 104703 105176 93 - . . scaffold1 WUBlastX DNA_Crypton 108618 108854 45 + . . scaffold1 WUBlastX DNA_Crypton 108903 109043 37 + . . scaffold1 WUBlastX LINE_CR1 112790 112882 20 - . . scaffold1 WUBlastX LINE_L1-Tx1 112992 114629 322 - . . scaffold1 WUBlastX LINE_L1-Tx1 113238 115175 425 - . . scaffold1 WUBlastX LINE_L1-Tx1 113283 114629 434 - . . scaffold1 WUBlastX LINE_L1-Tx1 114623 115375 220 - . . scaffold1 WUBlastX LINE_RTE-X 131872 132219 34 - . . scaffold1 WUBlastX LINE_RTE-X 131947 132222 37 - . . scaffold1 WUBlastX LINE_RTE-X 131995 132213 49 - . . scaffold1 WUBlastX LINE_RTE-X 132031 132222 65 - . . scaffold1 WUBlastX LINE_RTE-X 133458 133772 26 - . . scaffold1 WUBlastX LINE_RTE-X 133542 133751 42 - . . scaffold1 WUBlastX LINE_RTE-X 133608 133748 73 - . . scaffold1 WUBlastX LINE_RTE-X 133772 134179 228 - . . scaffold1 WUBlastX LINE_RTE-X 134196 134570 222 - . . scaffold1 WUBlastX LINE_RTE-X 134199 135038 166 - . . scaffold1 WUBlastX LINE_RTE-X 134235 134639 205 - . . scaffold1 WUBlastX LINE_RTE-X 135073 135564 40 - . . scaffold1 WUBlastX LINE_RTE-X 135097 135480 54 - . . scaffold1 WUBlastX LINE_RTE-X 135711 135881 30 - . . scaffold1 WUBlastX LINE_RTE-X 135884 136099 37 - . . scaffold1 WUBlastX LINE_RTE-X 135953 136132 44 - . . scaffold1 WUBlastX LINE_RTE-X 136141 136299 55 - . . scaffold1 WUBlastX LINE_RTE-X 136298 136447 38 - . . scaffold1 WUBlastX LINE_L1-Tx1 136533 136844 97 - . . scaffold1 WUBlastX LINE_L1 136593 136808 104 - . . scaffold1 WUBlastX LINE_L1 136832 137251 105 - . . scaffold1 TRF Tandem_Repeat 152380 152409 51 + . . scaffold1 TRF Tandem_Repeat 155435 155476 84 + . . scaffold1 TRF Tandem_Repeat 158553 158604 104 + . . scaffold1 TRF Tandem_Repeat 162716 162842 91 + . . scaffold1 GLEAN promoter 162980 163979 0.742263 + . ID=CGI_10013469; scaffold1 GLEAN mRNA 163980 185527 0.742263 + . ID=CGI_10013469; scaffold1 TRF Tandem_Repeat 165351 165425 51 + . . scaffold1 WUBlastX LINE_L2 169134 169247 32 + . . scaffold1 WUBlastX LINE_CR1 169906 170277 48 + . . scaffold1 WUBlastX LINE_CR1-L2 169915 170229 147 + . . scaffold1 WUBlastX LINE_CR1-L2 170477 170866 35 + . . scaffold1 WUBlastX LINE_L2 170615 170980 46 + . . scaffold1 GLEAN promoter 199137 200136 0.791644 + . ID=CGI_10013470; scaffold1 GLEAN mRNA 200137 205035 0.791644 + . ID=CGI_10013470; scaffold1 TRF Tandem_Repeat 200975 201038 60 + . . scaffold1 TRF Tandem_Repeat 206866 206909 52 + . . scaffold1 GLEAN mRNA 207338 229810 0.999128 - . ID=CGI_10013471; scaffold1 TRF Tandem_Repeat 214108 214194 131 + . . scaffold1 TRF Tandem_Repeat 217217 217276 120 + . . scaffold1 TRF Tandem_Repeat 220104 220146 50 + . . scaffold1 TRF Tandem_Repeat 227115 227170 87 + . . scaffold1 GLEAN promoter 229811 230810 0.999128 - . ID=CGI_10013471; scaffold1 TRF Tandem_Repeat 231642 231705 80 + . . scaffold1 GLEAN mRNA 232357 238741 0.63415 - . ID=CGI_10013472; scaffold1 TRF Tandem_Repeat 236968 237018 50 + . . scaffold1 GLEAN promoter 238742 239741 0.63415 - . ID=CGI_10013472; scaffold1 GLEAN mRNA 239740 257002 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_TcMar-Tc1 252414 252710 139 - . . scaffold1 WUBlastX DNA_TcMar-Tc1 252414 253052 109 - . . scaffold1 WUBlastX DNA_TcMar-Tc1 252414 252653 142 - . . scaffold1 WUBlastX DNA_TcMar-Tc1 253069 253344 29 - . . scaffold1 WUBlastX DNA_TcMar-Tc1 253294 253386 23 - . . scaffold1 GLEAN promoter 257003 258002 0.998426 - . ID=CGI_10013473; scaffold1 WUBlastX DNA_hAT-Tip100 261068 261679 330 + . . scaffold1 WUBlastX DNA_hAT-Tip100 261664 261939 155 + . . scaffold1 WUBlastX DNA_hAT-Tip100 261939 263069 693 + . . scaffold1 GLEAN promoter 263014 264013 0.995923 + . ID=CGI_10013474; scaffold1 GLEAN mRNA 264014 267684 0.995923 + . ID=CGI_10013474; scaffold1 WUBlastX DNA_Harbinger 266706 266864 85 - . . scaffold1 WUBlastX DNA_Harbinger 266781 266966 84 - . . scaffold1 WUBlastX DNA_Harbinger 266956 267147 54 - . . scaffold1 WUBlastX DNA_Harbinger 266956 267198 32 - . . scaffold1 GLEAN promoter 268096 269095 0.936054 + . ID=CGI_10013475; scaffold1 GLEAN mRNA 269096 269401 0.936054 + . ID=CGI_10013475; scaffold1 GLEAN mRNA 269150 284058 0.492407 - . ID=CGI_10013476; scaffold1 GLEAN promoter 284059 285058 0.492407 - . ID=CGI_10013476; scaffold1 GLEAN mRNA 284150 292810 0.990125 - . ID=CGI_10013477; scaffold1 GLEAN promoter 284256 285255 0.59015 + . ID=CGI_10013478; scaffold1 GLEAN mRNA 285256 285603 0.59015 + . ID=CGI_10013478; scaffold1 TRF Tandem_Repeat 288147 288231 170 + . . scaffold1 GLEAN promoter 292811 293810 0.990125 - . ID=CGI_10013477; scaffold1 GLEAN mRNA 332672 354082 0.749562 - . ID=CGI_10013479; scaffold1 TRF Tandem_Repeat 333193 333233 57 + . . scaffold1 GLEAN promoter 354083 355082 0.749562 - . ID=CGI_10013479; scaffold1 TRF Tandem_Repeat 354675 354728 90 + . . scaffold10 GLEAN mRNA 19040 33768 0.681225 - . ID=CGI_10003110; scaffold10 GLEAN promoter 33769 34768 0.681225 - . ID=CGI_10003110; scaffold10 GLEAN mRNA 46856 51766 0.9993 - . ID=CGI_10003111; scaffold10 GLEAN promoter 51767 52766 0.9993 - . ID=CGI_10003111; scaffold100 GLEAN promoter 199 1198 0.999976 + . ID=CGI_10026403; scaffold100 GLEAN mRNA 1199 16389 0.999976 + . ID=CGI_10026403; scaffold100 TRF Tandem_Repeat 5003 5036 59 + . . scaffold100 TRF Tandem_Repeat 11921 12916 1046 + . . scaffold100 TRF Tandem_Repeat 11921 12931 1061 + . . scaffold100 TRF Tandem_Repeat 11925 12931 1086 + . . scaffold100 TRF Tandem_Repeat 17395 17432 67 + . . scaffold100 TRF Tandem_Repeat 17766 17796 62 + . . scaffold100 GLEAN promoter 18384 19383 0.999661 + . ID=CGI_10026404; scaffold100 TRF Tandem_Repeat 19048 19087 80 + . . scaffold100 TRF Tandem_Repeat 19087 19128 84 + . . scaffold100 GLEAN mRNA 19384 21069 0.999661 + . ID=CGI_10026404; scaffold100 TRF Tandem_Repeat 22137 22172 63 + . . scaffold100 GLEAN mRNA 24664 25650 0.447148 - . ID=CGI_10026405; scaffold100 GLEAN promoter 25651 26650 0.447148 - . ID=CGI_10026405; scaffold100 TRF Tandem_Repeat 26390 26434 90 + . . scaffold100 GLEAN promoter 28088 29087 0.950396 + . ID=CGI_10026406; scaffold100 GLEAN mRNA 29088 30755 0.950396 + . ID=CGI_10026406; scaffold100 TRF Tandem_Repeat 34742 34870 179 + . . scaffold100 TRF Tandem_Repeat 34764 34869 56 + . . scaffold100 TRF Tandem_Repeat 38711 38859 253 + . . scaffold100 GLEAN promoter 42862 43861 0.420759 + . ID=CGI_10026408; scaffold100 TRF Tandem_Repeat 43045 43146 186 + . . scaffold100 GLEAN mRNA 43862 48692 0.420759 + . ID=CGI_10026408; scaffold100 GLEAN promoter 51371 52370 0.747147 + . ID=CGI_10026409; scaffold100 TRF Tandem_Repeat 51702 51750 98 + . . scaffold100 GLEAN promoter 52039 53038 0.99655 + . ID=CGI_10026410; scaffold100 GLEAN mRNA 52371 52886 0.747147 + . ID=CGI_10026409; scaffold100 GLEAN mRNA 53039 54040 0.99655 + . ID=CGI_10026410; scaffold100 GLEAN mRNA 72047 73183 0.986676 - . ID=CGI_10026411; scaffold100 GLEAN promoter 73184 74183 0.986676 - . ID=CGI_10026411; scaffold100 TRF Tandem_Repeat 73811 73874 128 + . . scaffold100 GLEAN mRNA 80891 87009 0.999676 - . ID=CGI_10026412; scaffold100 TRF Tandem_Repeat 83033 83302 445 + . . scaffold100 GLEAN promoter 87010 88009 0.999676 - . ID=CGI_10026412; scaffold100 GLEAN promoter 89104 90103 1 + . ID=CGI_10026413; scaffold100 GLEAN mRNA 90104 100499 1 + . ID=CGI_10026413; scaffold100 TRF Tandem_Repeat 90396 90430 70 + . . scaffold100 TRF Tandem_Repeat 92372 92396 50 + . . scaffold100 TRF Tandem_Repeat 96516 96638 210 + . . scaffold100 TRF Tandem_Repeat 98679 98720 57 + . . scaffold100 TRF Tandem_Repeat 104320 104850 488 + . . scaffold100 TRF Tandem_Repeat 104335 104834 558 + . . scaffold100 WUBlastX LINE_L2-Hydra 107147 107290 20 + . . scaffold100 WUBlastX LINE_Proto2 107171 107497 38 + . . scaffold100 WUBlastX LINE_L2-Hydra 107496 108062 65 + . . scaffold100 WUBlastX LINE_Proto2 107610 108179 84 + . . scaffold100 WUBlastX LINE_Jockey 110808 110876 20 + . . scaffold100 WUBlastX LINE_L2-Hydra 111228 111443 24 + . . scaffold100 WUBlastX LINE_CR1 111431 112651 182 + . . scaffold100 WUBlastX LINE_CR1 111554 112855 163 + . . scaffold100 WUBlastX LINE_RTE-X 111590 112576 302 + . . scaffold100 GLEAN mRNA 121467 129851 0.993907 - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 123548 124085 541 + . . scaffold100 TRF Tandem_Repeat 123561 124085 443 + . . scaffold100 TRF Tandem_Repeat 123590 124106 491 + . . scaffold100 TRF Tandem_Repeat 124624 126170 1218 + . . scaffold100 TRF Tandem_Repeat 127499 127566 136 + . . scaffold100 TRF Tandem_Repeat 127773 127823 93 + . . scaffold100 GLEAN promoter 129852 130851 0.993907 - . ID=CGI_10026414; scaffold100 TRF Tandem_Repeat 130305 130454 264 + . . scaffold100 GLEAN promoter 133564 134563 0.785776 + . ID=CGI_10026415; scaffold100 GLEAN mRNA 134564 140433 0.785776 + . ID=CGI_10026415; scaffold100 TRF Tandem_Repeat 135155 135213 109 + . . scaffold100 GLEAN mRNA 142234 148092 1 - . ID=CGI_10026416; scaffold100 TRF Tandem_Repeat 145803 145885 159 + . . scaffold100 GLEAN promoter 148093 149092 1 - . ID=CGI_10026416; scaffold100 GLEAN mRNA 148977 151139 0.999158 - . ID=CGI_10026417; scaffold100 TRF Tandem_Repeat 150132 150203 126 + . . scaffold100 GLEAN promoter 151140 152139 0.999158 - . ID=CGI_10026417; scaffold100 TRF Tandem_Repeat 155471 157406 3180 + . . scaffold100 GLEAN mRNA 159201 160223 0.998077 - . ID=CGI_10026418; scaffold100 GLEAN promoter 160224 161223 0.998077 - . ID=CGI_10026418; scaffold100 TRF Tandem_Repeat 164161 164214 108 + . . scaffold100 TRF Tandem_Repeat 180617 181001 371 + . . scaffold100 TRF Tandem_Repeat 180617 181002 404 + . . scaffold100 TRF Tandem_Repeat 180617 181001 371 + . . scaffold100 TRF Tandem_Repeat 180626 181003 442 + . . scaffold100 TRF Tandem_Repeat 186422 186478 51 + . . scaffold100 TRF Tandem_Repeat 189316 189357 84 + . . scaffold100 TRF Tandem_Repeat 189355 189385 53 + . . scaffold100 TRF Tandem_Repeat 197263 197353 112 + . . scaffold100 TRF Tandem_Repeat 197944 197982 78 + . . scaffold100 GLEAN mRNA 198241 212561 0.678254 - . ID=CGI_10026419; scaffold100 TRF Tandem_Repeat 203661 203707 94 + . . scaffold100 GLEAN promoter 212562 213561 0.678254 - . ID=CGI_10026419; scaffold100 TRF Tandem_Repeat 218065 218131 82 + . . scaffold100 GLEAN promoter 219761 220760 0.351165 + . ID=CGI_10026420; scaffold100 GLEAN mRNA 220761 224400 0.351165 + . ID=CGI_10026420; scaffold100 TRF Tandem_Repeat 226577 226667 83 + . . scaffold100 TRF Tandem_Repeat 226578 226667 108 + . . scaffold100 GLEAN mRNA 226841 227446 0.999372 - . ID=CGI_10026421; scaffold100 GLEAN promoter 227447 228446 0.999372 - . ID=CGI_10026421; scaffold100 WUBlastX LINE_CR1-L2 230125 230271 75 + . . scaffold100 WUBlastX LINE_CR1-L2 230140 230607 42 + . . scaffold100 WUBlastX LINE_CR1-L2 230140 230253 96 + . . scaffold100 WUBlastX LINE_CR1-L2 230246 230425 45 + . . scaffold100 GLEAN mRNA 235013 251847 0.858664 - . ID=CGI_10026422; scaffold100 GLEAN promoter 251848 252847 0.858664 - . ID=CGI_10026422; scaffold100 TRF Tandem_Repeat 254357 254409 106 + . . scaffold100 GLEAN promoter 259026 260025 1 + . ID=CGI_10026423; scaffold100 GLEAN mRNA 260026 260598 1 + . ID=CGI_10026423; scaffold100 GLEAN promoter 261072 262071 1 + . ID=CGI_10026424; scaffold100 GLEAN mRNA 262072 282258 1 + . ID=CGI_10026424; scaffold100 TRF Tandem_Repeat 266486 266532 94 + . . scaffold100 TRF Tandem_Repeat 280739 280774 72 + . . scaffold100 GLEAN mRNA 285968 287638 1 - . ID=CGI_10026425; scaffold100 GLEAN promoter 287639 288638 1 - . ID=CGI_10026425; scaffold100 TRF Tandem_Repeat 292519 292553 70 + . . scaffold100 TRF Tandem_Repeat 293358 294097 1049 + . . scaffold100 GLEAN mRNA 296623 307835 0.999996 - . ID=CGI_10026426; scaffold100 TRF Tandem_Repeat 297229 297336 121 + . . scaffold100 GLEAN promoter 307836 308835 0.999996 - . ID=CGI_10026426; scaffold100 GLEAN mRNA 332369 338347 1 - . ID=CGI_10026427; scaffold100 TRF Tandem_Repeat 335241 335985 1122 + . . scaffold100 TRF Tandem_Repeat 336158 336254 92 + . . scaffold100 TRF Tandem_Repeat 337310 337426 101 + . . scaffold100 TRF Tandem_Repeat 337463 337635 168 + . . scaffold100 TRF Tandem_Repeat 337463 337638 111 + . . scaffold100 TRF Tandem_Repeat 337481 337658 149 + . . scaffold100 TRF Tandem_Repeat 337724 337825 109 + . . scaffold100 GLEAN promoter 338348 339347 1 - . ID=CGI_10026427; scaffold100 GLEAN promoter 338554 339553 1 + . ID=CGI_10026428; scaffold100 GLEAN mRNA 339554 341294 1 + . ID=CGI_10026428; scaffold100 GLEAN promoter 350299 351298 0.998953 + . ID=CGI_10026429; scaffold100 GLEAN mRNA 351299 369094 0.998953 + . ID=CGI_10026429; scaffold100 TRF Tandem_Repeat 352737 352778 84 + . . scaffold100 TRF Tandem_Repeat 353086 353396 201 + . . scaffold100 TRF Tandem_Repeat 358617 358813 385 + . . scaffold100 GLEAN mRNA 372413 376545 0.996496 - . ID=CGI_10026430; scaffold100 GLEAN promoter 376546 377545 0.996496 - . ID=CGI_10026430; scaffold100 TRF Tandem_Repeat 376623 376698 152 + . . scaffold100 GLEAN promoter 376668 377667 1 + . ID=CGI_10026431; scaffold100 GLEAN mRNA 377668 378195 1 + . ID=CGI_10026431; scaffold100 GLEAN mRNA 385842 387314 1 - . ID=CGI_10026432; scaffold100 GLEAN promoter 387315 388314 1 - . ID=CGI_10026432; scaffold100 TRF Tandem_Repeat 388775 388805 62 + . . scaffold100 TRF Tandem_Repeat 397254 397346 132 + . . scaffold100 GLEAN mRNA 398545 399441 1 - . ID=CGI_10026433; scaffold100 GLEAN promoter 399442 400441 1 - . ID=CGI_10026433; scaffold100 TRF Tandem_Repeat 399796 399855 120 + . . scaffold100 GLEAN mRNA 401284 409746 0.999395 - . ID=CGI_10026434; scaffold100 GLEAN promoter 408761 409760 1 + . ID=CGI_10026435; scaffold100 GLEAN promoter 409747 410746 0.999395 - . ID=CGI_10026434; scaffold100 GLEAN mRNA 409761 411149 1 + . ID=CGI_10026435; scaffold100 GLEAN promoter 411460 412459 1 + . ID=CGI_10026436; scaffold100 GLEAN mRNA 412460 413157 1 + . ID=CGI_10026436; scaffold100 TRF Tandem_Repeat 413211 413239 58 + . . scaffold100 TRF Tandem_Repeat 425128 425230 77 + . . scaffold100 TRF Tandem_Repeat 426043 426084 84 + . . scaffold100 GLEAN mRNA 426659 427639 1 - . ID=CGI_10026437; scaffold100 GLEAN promoter 427640 428639 1 - . ID=CGI_10026437; scaffold100 TRF Tandem_Repeat 432846 432886 64 + . . scaffold100 TRF Tandem_Repeat 433979 434019 82 + . . scaffold100 TRF Tandem_Repeat 434304 434337 68 + . . scaffold100 GLEAN mRNA 434385 451106 0.72825 - . ID=CGI_10026438; scaffold100 TRF Tandem_Repeat 440457 440482 52 + . . scaffold100 WUBlastX DNA_TcMar-Tc1 440679 441005 38 - . . scaffold100 WUBlastX DNA_TcMar-Tc1 440742 440936 71 - . . scaffold100 WUBlastX DNA_TcMar-Tc1 440748 440978 58 - . . scaffold100 GLEAN promoter 451107 452106 0.72825 - . ID=CGI_10026438; scaffold100 GLEAN mRNA 451819 452052 0.776794 - . ID=CGI_10026439; scaffold100 GLEAN promoter 452053 453052 0.776794 - . ID=CGI_10026439; scaffold100 GLEAN mRNA 454874 455977 0.811725 - . ID=CGI_10026440; scaffold100 GLEAN promoter 455978 456977 0.811725 - . ID=CGI_10026440; scaffold100 GLEAN promoter 458305 459304 0.762155 + . ID=CGI_10026441; scaffold100 GLEAN mRNA 459305 477997 0.762155 + . ID=CGI_10026441; scaffold100 TRF Tandem_Repeat 461288 461360 139 + . . scaffold100 TRF Tandem_Repeat 461681 461724 88 + . . scaffold100 TRF Tandem_Repeat 462058 462104 94 + . . scaffold100 TRF Tandem_Repeat 479316 479343 56 + . . scaffold100 TRF Tandem_Repeat 482167 482258 52 + . . scaffold100 TRF Tandem_Repeat 482200 482238 51 + . . scaffold100 TRF Tandem_Repeat 482209 482267 59 + . . scaffold100 TRF Tandem_Repeat 486853 486933 99 + . . scaffold100 TRF Tandem_Repeat 486853 486931 87 + . . scaffold100 TRF Tandem_Repeat 488523 488583 97 + . . scaffold100 TRF Tandem_Repeat 506678 506730 61 + . . scaffold100 GLEAN promoter 515562 516561 0.558382 + . ID=CGI_10026442; scaffold100 GLEAN mRNA 516562 518097 0.558382 + . ID=CGI_10026442; scaffold100 TRF Tandem_Repeat 518929 519181 166 + . . scaffold100 TRF Tandem_Repeat 518930 519324 252 + . . scaffold100 TRF Tandem_Repeat 518930 519339 201 + . . scaffold100 TRF Tandem_Repeat 519078 519201 102 + . . scaffold100 TRF Tandem_Repeat 520420 520803 167 + . . scaffold100 TRF Tandem_Repeat 520551 520805 149 + . . scaffold100 WUBlastX LINE_CR1 539941 540351 75 - . . scaffold100 WUBlastX LINE_RTE-X 539983 540306 100 - . . scaffold100 WUBlastX LTR_Ngaro 540551 541018 228 - . . scaffold100 WUBlastX LTR_Ngaro 540855 541190 95 - . . scaffold100 WUBlastX LTR_Ngaro 541165 541401 85 - . . scaffold100 WUBlastX LTR_Ngaro 541465 542196 373 - . . scaffold100 WUBlastX LTR_Ngaro 542189 542374 92 - . . scaffold100 WUBlastX LTR_Ngaro 542367 542936 441 - . . scaffold100 WUBlastX LTR_Gypsy 542502 543020 55 - . . scaffold100 WUBlastX LTR_Ngaro 543332 543436 71 - . . scaffold100 WUBlastX LTR_Ngaro 543450 543590 114 - . . scaffold100 TRF Tandem_Repeat 544575 544615 82 + . . scaffold100 GLEAN mRNA 546630 588675 0.372163 - . ID=CGI_10026443; scaffold100 TRF Tandem_Repeat 573677 573764 86 + . . scaffold100 TRF Tandem_Repeat 573677 573764 95 + . . scaffold100 TRF Tandem_Repeat 584137 584164 56 + . . scaffold100 GLEAN promoter 588676 589675 0.372163 - . ID=CGI_10026443; scaffold100 TRF Tandem_Repeat 592587 592638 70 + . . scaffold100 TRF Tandem_Repeat 595607 595660 99 + . . scaffold100 WUBlastX DNA_IS4EU 597578 597931 99 + . . scaffold100 WUBlastX DNA_Kolobok-IS4 597647 597964 107 + . . scaffold100 WUBlastX DNA_Kolobok-IS4 597662 598063 93 + . . scaffold100 WUBlastX DNA_IS4EU 601041 601454 270 - . . scaffold100 WUBlastX DNA_Kolobok-IS4 601457 601798 106 - . . scaffold100 WUBlastX DNA_IS4EU 602008 602262 28 - . . scaffold100 WUBlastX DNA_IS4EU 602859 603113 55 - . . scaffold100 TRF Tandem_Repeat 606090 606129 53 + . . scaffold100 TRF Tandem_Repeat 608827 609783 1361 + . . scaffold100 TRF Tandem_Repeat 609810 609877 109 + . . scaffold100 TRF Tandem_Repeat 610241 610293 88 + . . scaffold100 TRF Tandem_Repeat 610241 610293 70 + . . scaffold100 GLEAN mRNA 610819 611958 0.74459 - . ID=CGI_10026444; scaffold100 TRF Tandem_Repeat 611024 611271 162 + . . scaffold100 TRF Tandem_Repeat 611077 611284 228 + . . scaffold100 GLEAN promoter 611959 612958 0.74459 - . ID=CGI_10026444; scaffold100 GLEAN mRNA 611960 632376 0.998789 - . ID=CGI_10026445; scaffold100 TRF Tandem_Repeat 617475 617555 117 + . . scaffold100 GLEAN promoter 632050 633049 0.873323 + . ID=CGI_10026446; scaffold100 GLEAN promoter 632377 633376 0.998789 - . ID=CGI_10026445; scaffold100 GLEAN mRNA 633050 652924 0.873323 + . ID=CGI_10026446; scaffold100 TRF Tandem_Repeat 637993 638531 930 + . . scaffold100 TRF Tandem_Repeat 647051 647242 187 + . . scaffold100 TRF Tandem_Repeat 648603 649308 876 + . . scaffold100 TRF Tandem_Repeat 648603 649308 995 + . . scaffold100 TRF Tandem_Repeat 648815 648926 62 + . . scaffold100 TRF Tandem_Repeat 648823 648939 66 + . . scaffold100 GLEAN mRNA 655842 668993 0.999949 - . ID=CGI_10026447; scaffold100 GLEAN promoter 668994 669993 0.999949 - . ID=CGI_10026447; scaffold100 TRF Tandem_Repeat 669670 669706 74 + . . scaffold100 GLEAN mRNA 671285 725122 0.993892 - . ID=CGI_10026448; scaffold100 TRF Tandem_Repeat 677882 678762 1611 + . . scaffold100 TRF Tandem_Repeat 679994 680059 78 + . . scaffold100 GLEAN promoter 713251 714250 0.999984 + . ID=CGI_10026449; scaffold100 GLEAN mRNA 714251 716164 0.999984 + . ID=CGI_10026449; scaffold100 TRF Tandem_Repeat 718167 718697 712 + . . scaffold100 GLEAN promoter 725123 726122 0.993892 - . ID=CGI_10026448; scaffold100 GLEAN promoter 725987 726986 0.999661 + . ID=CGI_10026450; scaffold100 GLEAN mRNA 726987 729860 0.999661 + . ID=CGI_10026450; scaffold100 WUBlastX DNA_Crypton 727203 728027 55 + . . scaffold100 TRF Tandem_Repeat 735356 735464 139 + . . scaffold100 TRF Tandem_Repeat 735374 735462 151 + . . scaffold100 GLEAN promoter 753647 754646 0.999989 + . ID=CGI_10026451; scaffold100 GLEAN mRNA 754647 755564 0.999989 + . ID=CGI_10026451; scaffold100 GLEAN mRNA 764698 765003 0.990739 - . ID=CGI_10026452; scaffold100 GLEAN promoter 765004 766003 0.990739 - . ID=CGI_10026452; scaffold100 WUBlastX LTR_DIRS 767882 768643 69 + . . scaffold100 WUBlastX LTR_DIRS 768023 768664 120 + . . scaffold100 WUBlastX LTR_DIRS 768131 768670 126 + . . scaffold100 WUBlastX LTR_DIRS 768215 768664 172 + . . scaffold100 GLEAN mRNA 775828 776326 0.999675 - . ID=CGI_10026453; scaffold100 GLEAN promoter 776327 777326 0.999675 - . ID=CGI_10026453; scaffold100 GLEAN mRNA 776783 777097 0.997847 - . ID=CGI_10026454; scaffold100 GLEAN promoter 777098 778097 0.997847 - . ID=CGI_10026454; scaffold100 TRF Tandem_Repeat 777519 777668 156 + . . scaffold100 TRF Tandem_Repeat 782183 782715 443 + . . scaffold100 GLEAN mRNA 783326 788221 0.989668 - . ID=CGI_10026455; scaffold100 GLEAN promoter 788222 789221 0.989668 - . ID=CGI_10026455; scaffold100 GLEAN mRNA 792382 797411 0.626072 - . ID=CGI_10026456; scaffold100 GLEAN promoter 797412 798411 0.626072 - . ID=CGI_10026456; scaffold100 TRF Tandem_Repeat 798599 798651 106 + . . scaffold100 TRF Tandem_Repeat 800999 801108 71 + . . scaffold100 GLEAN promoter 802879 803878 0.588753 + . ID=CGI_10026457; scaffold100 GLEAN mRNA 803879 806686 0.588753 + . ID=CGI_10026457; scaffold100 TRF Tandem_Repeat 815920 815954 61 + . . scaffold100 GLEAN mRNA 816436 816909 0.999661 - . ID=CGI_10026458; scaffold100 GLEAN promoter 816910 817909 0.999661 - . ID=CGI_10026458; scaffold100 WUBlastX LINE_RTE-X 818142 818291 49 - . . scaffold100 WUBlastX LINE_RTE-X 819122 820006 522 + . . scaffold100 WUBlastX LINE_RTE-X 819374 820129 162 + . . scaffold100 TRF Tandem_Repeat 820391 820415 50 + . . scaffold100 WUBlastX LINE_RTE-X 824116 824307 119 + . . scaffold100 WUBlastX LTR_Copia 825814 826014 41 - . . scaffold100 WUBlastX LTR_Gypsy 826301 826570 99 - . . scaffold100 WUBlastX LTR_Gypsy 826576 826881 264 - . . scaffold100 WUBlastX LTR_Gypsy 826899 827852 427 - . . scaffold100 WUBlastX LTR_Gypsy 827852 827887 34 - . . scaffold100 WUBlastX LTR_Gypsy 827878 828750 580 - . . scaffold100 WUBlastX LTR_Gypsy 828753 828959 83 - . . scaffold100 WUBlastX LTR_Gypsy 828971 829027 23 - . . scaffold100 WUBlastX LTR_ERVL 829247 829420 26 - . . scaffold100 WUBlastX LTR_Gypsy 829336 829722 74 - . . scaffold100 WUBlastX LTR_Gypsy 829402 829722 121 - . . scaffold100 WUBlastX LTR_Gypsy-Cigr 829689 829811 21 - . . scaffold100 GLEAN promoter 830692 831691 0.889099 + . ID=CGI_10026459; scaffold100 GLEAN mRNA 831692 834784 0.889099 + . ID=CGI_10026459; scaffold100 WUBlastX LINE_L1 840067 840594 134 - . . scaffold100 WUBlastX LINE_L1-Tx1 840070 840699 117 - . . scaffold100 WUBlastX LINE_I 843551 843592 20 - . . scaffold100 WUBlastX LINE_L1-Tx1 843741 844679 447 - . . scaffold100 WUBlastX LINE_L1 844404 844805 120 - . . scaffold100 WUBlastX LINE_L1 844760 846001 394 - . . scaffold100 WUBlastX LINE_L1-Tx1 844796 845653 606 - . . scaffold100 WUBlastX LINE_L1-Tx1 845788 846573 318 - . . scaffold100 WUBlastX LTR_Ngaro 864609 864923 20 + . . scaffold100 WUBlastX LTR_Ngaro 864705 864815 28 + . . scaffold100 WUBlastX LTR_Ngaro 864931 865116 47 + . . scaffold100 WUBlastX LTR_Ngaro 865009 865116 48 + . . scaffold100 WUBlastX LTR_Ngaro 865604 866278 249 + . . scaffold100 WUBlastX LTR_Ngaro 866035 866481 85 + . . scaffold100 WUBlastX LTR_Ngaro 866472 866756 97 + . . scaffold100 WUBlastX LINE_L1-Tx1 867111 867497 25 - . . scaffold100 WUBlastX LINE_L1-Tx1 867486 868412 36 - . . scaffold100 WUBlastX LINE_L1-Tx1 868117 868572 40 - . . scaffold100 WUBlastX LINE_L1 868423 868743 27 - . . scaffold100 WUBlastX LINE_L1-Tx1 868941 868991 27 - . . scaffold100 WUBlastX LINE_L1 868991 869038 23 - . . scaffold100 WUBlastX LINE_L1-Tx1 869039 869425 207 - . . scaffold100 WUBlastX LTR_Ngaro 870883 871182 83 + . . scaffold100 WUBlastX LTR_Ngaro 871283 871381 20 + . . scaffold100 WUBlastX LTR_Ngaro 871381 871566 49 + . . scaffold100 WUBlastX LTR_Ngaro 872431 872919 57 + . . scaffold100 WUBlastX LTR_Ngaro 872752 872919 81 + . . scaffold100 WUBlastX LTR_Ngaro 872785 872919 89 + . . scaffold100 TRF Tandem_Repeat 890112 890155 54 + . . scaffold100 TRF Tandem_Repeat 894625 894774 153 + . . scaffold100 TRF Tandem_Repeat 895978 896021 70 + . . scaffold100 WUBlastX DNA_IS4EU 907171 907350 77 + . . scaffold100 WUBlastX DNA_IS4EU 907395 907523 20 + . . scaffold100 WUBlastX DNA_Kolobok-IS4 907395 907442 24 + . . scaffold100 TRF Tandem_Repeat 909912 909944 50 + . . scaffold100 TRF Tandem_Repeat 914786 914845 93 + . . scaffold100 TRF Tandem_Repeat 914786 914845 75 + . . scaffold100 TRF Tandem_Repeat 917020 917195 273 + . . scaffold100 TRF Tandem_Repeat 918487 918773 349 + . . scaffold100 TRF Tandem_Repeat 918496 918767 393 + . . scaffold100 TRF Tandem_Repeat 919162 919195 68 + . . scaffold100 TRF Tandem_Repeat 919383 919411 58 + . . scaffold100 TRF Tandem_Repeat 919916 919982 80 + . . scaffold100 TRF Tandem_Repeat 925004 925045 57 + . . scaffold100 TRF Tandem_Repeat 925004 925057 64 + . . scaffold100 GLEAN promoter 929227 930226 0.87396 + . ID=CGI_10026460; scaffold100 GLEAN mRNA 930227 930616 0.87396 + . ID=CGI_10026460; scaffold100 WUBlastX LTR_Ngaro 931666 932265 244 - . . scaffold100 WUBlastX LTR_Ngaro 932288 932566 126 - . . scaffold100 WUBlastX LTR_Ngaro 932330 932566 136 - . . scaffold100 WUBlastX LTR_Ngaro 932571 932720 31 - . . scaffold100 WUBlastX LTR_Ngaro 932571 933257 25 - . . scaffold100 WUBlastX LTR_Ngaro 932669 932965 42 - . . scaffold100 WUBlastX LTR_Ngaro 933102 933257 52 - . . scaffold100 WUBlastX LTR_Ngaro 933266 933445 50 - . . scaffold100 WUBlastX LTR_Ngaro 933430 933534 40 - . . scaffold100 WUBlastX LTR_Ngaro 933573 934001 31 - . . scaffold100 WUBlastX LTR_Ngaro 933762 934007 84 - . . scaffold100 WUBlastX LTR_Ngaro 933813 934004 138 - . . scaffold100 TRF Tandem_Repeat 941945 941997 56 + . . scaffold100 WUBlastX LTR_Gypsy 953628 953759 33 + . . scaffold100 WUBlastX LTR_Copia 953712 953777 32 + . . scaffold100 WUBlastX LTR_ERVK 953860 953994 38 + . . scaffold100 WUBlastX LTR_Gypsy 953893 954834 148 + . . scaffold100 WUBlastX LTR_Gypsy-Gmr1 954695 955333 377 + . . scaffold100 WUBlastX LTR_Gypsy-Cigr 954803 955333 536 + . . scaffold100 WUBlastX LTR_Gypsy 955317 955535 200 + . . scaffold100 WUBlastX LTR_Gypsy 955341 955580 192 + . . scaffold100 WUBlastX LTR_Gypsy 955531 955635 97 + . . scaffold100 WUBlastX LTR_Gypsy 955534 955764 37 + . . scaffold100 WUBlastX LTR_ERV1 955549 955653 64 + . . scaffold100 TRF Tandem_Repeat 967014 968610 1959 + . . scaffold100 TRF Tandem_Repeat 967067 968652 1884 + . . scaffold100 TRF Tandem_Repeat 974588 974615 56 + . . scaffold100 TRF Tandem_Repeat 974617 974663 85 + . . scaffold100 WUBlastX LINE_Penelope 979275 979676 176 - . . scaffold100 TRF Tandem_Repeat 983899 983940 84 + . . scaffold100 TRF Tandem_Repeat 986988 987046 102 + . . scaffold100 WUBlastX LINE_RTE-BovB 988499 988948 34 - . . scaffold100 WUBlastX LINE_RTE-BovB 988535 988915 231 - . . scaffold100 TRF Tandem_Repeat 1007424 1007461 51 + . . scaffold100 WUBlastX DNA_hAT-Charlie 1008717 1009250 22 + . . scaffold100 WUBlastX DNA_hAT-Blackja 1008798 1010105 425 + . . scaffold100 WUBlastX DNA_TcMar-Tc1 1021650 1021985 47 + . . scaffold100 WUBlastX DNA_TcMar-Tc1 1022222 1022524 189 + . . scaffold100 GLEAN promoter 1046744 1047743 0.593383 + . ID=CGI_10026462; scaffold100 GLEAN mRNA 1047744 1050248 0.593383 + . ID=CGI_10026462; scaffold100 GLEAN mRNA 1053819 1056044 1 - . ID=CGI_10026463; scaffold100 GLEAN promoter 1056045 1057044 1 - . ID=CGI_10026463; scaffold100 TRF Tandem_Repeat 1057687 1057721 70 + . . scaffold100 WUBlastX LINE_RTE-BovB 1058656 1059009 39 + . . scaffold100 WUBlastX LINE_RTE-X 1058725 1059006 116 + . . scaffold100 WUBlastX DNA_TcMar-Marin 1059762 1060427 348 + . . scaffold100 WUBlastX DNA_TcMar-Marin 1060562 1060882 99 + . . scaffold100 WUBlastX DNA_TcMar-Marin 1060616 1060861 124 + . . scaffold100 WUBlastX DNA_TcMar-Marin 1060670 1060990 117 + . . scaffold100 WUBlastX DNA_TcMar-Marin 1060679 1060882 125 + . . scaffold100 TRF Tandem_Repeat 1061075 1061121 94 + . . scaffold100 TRF Tandem_Repeat 1066760 1067402 598 + . . scaffold100 TRF Tandem_Repeat 1081310 1081540 265 + . . scaffold100 TRF Tandem_Repeat 1081376 1081474 77 + . . scaffold100 TRF Tandem_Repeat 1083813 1083886 148 + . . scaffold100 WUBlastX LTR_Pao 1097751 1097843 28 - . . scaffold100 WUBlastX LTR_Pao 1097979 1098365 49 - . . scaffold100 WUBlastX LTR_Pao 1098261 1098365 56 - . . scaffold100 WUBlastX LTR_Pao 1098581 1098691 21 - . . scaffold100 WUBlastX LTR_Pao 1099612 1099680 20 - . . scaffold100 GLEAN mRNA 1100095 1111448 0.710974 - . ID=CGI_10026464; scaffold100 TRF Tandem_Repeat 1105267 1105315 91 + . . scaffold100 GLEAN promoter 1111449 1112448 0.710974 - . ID=CGI_10026464; scaffold100 GLEAN mRNA 1112442 1122357 0.999481 - . ID=CGI_10026465; scaffold100 TRF Tandem_Repeat 1117860 1117923 128 + . . scaffold100 TRF Tandem_Repeat 1118462 1118515 108 + . . scaffold100 TRF Tandem_Repeat 1121456 1121489 52 + . . scaffold100 GLEAN promoter 1122358 1123357 0.999481 - . ID=CGI_10026465; scaffold100 TRF Tandem_Repeat 1135753 1135826 51 + . . scaffold100 GLEAN mRNA 1146753 1146974 0.999327 - . ID=CGI_10026466; scaffold100 GLEAN promoter 1146975 1147974 0.999327 - . ID=CGI_10026466; scaffold100 TRF Tandem_Repeat 1148519 1148564 58 + . . scaffold100 TRF Tandem_Repeat 1148790 1149984 1761 + . . scaffold100 TRF Tandem_Repeat 1151241 1151276 72 + . . scaffold100 TRF Tandem_Repeat 1157305 1157334 51 + . . scaffold100 TRF Tandem_Repeat 1159650 1159693 70 + . . scaffold100 TRF Tandem_Repeat 1167263 1167295 50 + . . scaffold100 GLEAN promoter 1171918 1172917 0.990978 + . ID=CGI_10026467; scaffold100 GLEAN mRNA 1172918 1174795 0.990978 + . ID=CGI_10026467; scaffold1000 TRF Tandem_Repeat 5257 5291 70 + . . scaffold1000 TRF Tandem_Repeat 5752 5882 86 + . . scaffold1000 TRF Tandem_Repeat 5752 5868 105 + . . scaffold1000 TRF Tandem_Repeat 12762 12804 59 + . . scaffold1000 TRF Tandem_Repeat 12762 12814 61 + . . scaffold1000 TRF Tandem_Repeat 16813 16863 75 + . . scaffold1000 GLEAN promoter 20835 21834 0.645529 + . ID=CGI_10013066; scaffold1000 GLEAN mRNA 21835 26347 0.645529 + . ID=CGI_10013066; scaffold1000 TRF Tandem_Repeat 23239 23287 89 + . . scaffold1000 TRF Tandem_Repeat 24551 24605 110 + . . scaffold1000 GLEAN mRNA 31516 32819 0.999994 - . ID=CGI_10013067; scaffold1000 GLEAN promoter 32820 33819 0.999994 - . ID=CGI_10013067; scaffold1000 TRF Tandem_Repeat 35305 35340 72 + . . scaffold1000 GLEAN mRNA 59040 60570 1 - . ID=CGI_10013068; scaffold1000 GLEAN promoter 60571 61570 1 - . ID=CGI_10013068; scaffold1000 GLEAN promoter 68934 69933 0.534679 + . ID=CGI_10013069; scaffold1000 TRF Tandem_Repeat 69703 69767 96 + . . scaffold1000 GLEAN mRNA 69934 70281 0.534679 + . ID=CGI_10013069; scaffold1000 GLEAN promoter 71479 72478 0.735899 + . ID=CGI_10013070; scaffold1000 GLEAN mRNA 72479 78087 0.735899 + . ID=CGI_10013070; scaffold1000 TRF Tandem_Repeat 76987 77061 98 + . . scaffold1000 TRF Tandem_Repeat 84217 84258 84 + . . scaffold1000 GLEAN promoter 85216 86215 0.999995 + . ID=CGI_10013071; scaffold1000 TRF Tandem_Repeat 85389 85434 67 + . . scaffold1000 GLEAN mRNA 86216 86560 0.999995 + . ID=CGI_10013071; scaffold1000 TRF Tandem_Repeat 94419 94455 74 + . . scaffold1000 WUBlastX LINE_CR1 95109 96599 132 + . . scaffold1000 WUBlastX LINE_RTE-X 95133 96356 897 + . . scaffold1000 TRF Tandem_Repeat 97920 97972 90 + . . scaffold1000 WUBlastX LINE_RTE-X 100204 100767 270 + . . scaffold1000 WUBlastX LINE_RTE-X 100456 100824 106 + . . scaffold1000 WUBlastX LINE_RTE-X 100522 100893 100 + . . scaffold1000 TRF Tandem_Repeat 101522 101591 140 + . . scaffold1000 TRF Tandem_Repeat 104149 104182 50 + . . scaffold1000 TRF Tandem_Repeat 105208 105260 106 + . . scaffold1000 GLEAN promoter 107099 108098 0.993384 + . ID=CGI_10013072; scaffold1000 GLEAN mRNA 108099 108350 0.993384 + . ID=CGI_10013072; scaffold1000 GLEAN promoter 114814 115813 0.935775 + . ID=CGI_10013073; scaffold1000 GLEAN mRNA 115814 123093 0.935775 + . ID=CGI_10013073; scaffold1000 TRF Tandem_Repeat 116896 116960 51 + . . scaffold1000 TRF Tandem_Repeat 118011 118125 122 + . . scaffold1000 TRF Tandem_Repeat 124108 124145 67 + . . scaffold1000 WUBlastX LINE_CR1 125185 125298 29 + . . scaffold1000 WUBlastX LINE_CR1 125230 125349 24 + . . scaffold1000 WUBlastX LINE_RTE-RTE 125322 125822 136 + . . scaffold1000 WUBlastX LINE_RTE-BovB 125415 125822 451 + . . scaffold1000 WUBlastX LINE_RTE-BovB 125815 126114 324 + . . scaffold1000 WUBlastX LINE_RTE-BovB 126110 126760 486 + . . scaffold1000 GLEAN mRNA 133988 143656 1 - . ID=CGI_10013074; scaffold1000 GLEAN promoter 143657 144656 1 - . ID=CGI_10013074; scaffold1000 TRF Tandem_Repeat 143932 144023 96 + . . scaffold1000 GLEAN promoter 145750 146749 0.989263 + . ID=CGI_10013075; scaffold1000 GLEAN mRNA 146750 156759 0.989263 + . ID=CGI_10013075; scaffold1000 WUBlastX LINE_CR1 147366 147653 91 + . . scaffold1000 WUBlastX LINE_CR1 147491 147811 50 + . . scaffold1000 WUBlastX LINE_CR1-L2 147890 148054 65 + . . scaffold1000 TRF Tandem_Repeat 150540 150583 61 + . . scaffold1000 GLEAN mRNA 158835 171191 1 - . ID=CGI_10013076; scaffold1000 GLEAN promoter 171192 172191 1 - . ID=CGI_10013076; scaffold1000 GLEAN mRNA 178266 183865 1 - . ID=CGI_10013077; scaffold1000 TRF Tandem_Repeat 180933 181063 148 + . . scaffold1000 TRF Tandem_Repeat 180933 181063 174 + . . scaffold1000 TRF Tandem_Repeat 181308 181341 59 + . . scaffold1000 TRF Tandem_Repeat 182253 182280 56 + . . scaffold1000 TRF Tandem_Repeat 182524 182641 157 + . . scaffold1000 TRF Tandem_Repeat 182548 182643 101 + . . scaffold1000 GLEAN promoter 183866 184865 1 - . ID=CGI_10013077; scaffold1000 GLEAN promoter 184679 185678 0.618241 + . ID=CGI_10013078; scaffold1000 GLEAN mRNA 185679 186080 0.618241 + . ID=CGI_10013078; scaffold1000 GLEAN mRNA 187757 190803 1 - . ID=CGI_10013079; scaffold1000 GLEAN promoter 190804 191803 1 - . ID=CGI_10013079; scaffold1000 GLEAN promoter 192468 193467 0.999999 + . ID=CGI_10013080; scaffold1000 TRF Tandem_Repeat 192808 192848 73 + . . scaffold1000 GLEAN mRNA 193468 193722 0.999999 + . ID=CGI_10013080; scaffold1000 GLEAN promoter 193582 194581 0.949713 + . ID=CGI_10013081; scaffold1000 GLEAN mRNA 194582 208723 0.949713 + . ID=CGI_10013081; scaffold1000 GLEAN promoter 210314 211313 1 + . ID=CGI_10013082; scaffold1000 GLEAN mRNA 211314 230048 1 + . ID=CGI_10013082; scaffold1000 GLEAN mRNA 235676 252253 0.99998 - . ID=CGI_10013083; scaffold1000 GLEAN promoter 252254 253253 0.99998 - . ID=CGI_10013083; scaffold1000 GLEAN promoter 253688 254687 0.650465 + . ID=CGI_10013084; scaffold1000 GLEAN mRNA 254688 266328 0.650465 + . ID=CGI_10013084; scaffold1000 TRF Tandem_Repeat 256332 256365 59 + . . scaffold1000 WUBlastX DNA_hAT-Ac 256748 256888 23 + . . scaffold1000 WUBlastX DNA_hAT-Ac 256790 256885 31 + . . scaffold1000 WUBlastX DNA_hAT-Ac 256832 257185 44 + . . scaffold1000 WUBlastX DNA_hAT 256886 257053 49 + . . scaffold1000 WUBlastX DNA_hAT-Ac 256913 257173 64 + . . scaffold1000 TRF Tandem_Repeat 262736 262804 120 + . . scaffold1000 TRF Tandem_Repeat 262746 262804 82 + . . scaffold1000 GLEAN mRNA 270040 273707 0.558382 - . ID=CGI_10013085; scaffold1000 WUBlastX LTR_ERV1 273528 273740 44 - . . scaffold1000 GLEAN promoter 273708 274707 0.558382 - . ID=CGI_10013085; scaffold1000 TRF Tandem_Repeat 278070 278116 94 + . . scaffold1000 GLEAN promoter 278792 279791 0.999415 + . ID=CGI_10013086; scaffold1000 GLEAN mRNA 279792 281053 0.999415 + . ID=CGI_10013086; scaffold1000 GLEAN promoter 287928 288927 0.507591 + . ID=CGI_10013087; scaffold1000 GLEAN mRNA 288928 290415 0.507591 + . ID=CGI_10013087; scaffold1000 GLEAN mRNA 293157 305942 0.99963 - . ID=CGI_10013088; scaffold1000 TRF Tandem_Repeat 296377 296597 320 + . . scaffold1000 TRF Tandem_Repeat 299410 299442 66 + . . scaffold1000 GLEAN promoter 301645 302644 1 + . ID=CGI_10013089; scaffold1000 GLEAN mRNA 302645 308609 1 + . ID=CGI_10013089; scaffold1000 TRF Tandem_Repeat 304180 304234 110 + . . scaffold1000 GLEAN promoter 305943 306942 0.99963 - . ID=CGI_10013088; scaffold1000 TRF Tandem_Repeat 310122 310164 86 + . . scaffold1000 GLEAN mRNA 313415 319591 0.937731 - . ID=CGI_10013090; scaffold1000 GLEAN promoter 319592 320591 0.937731 - . ID=CGI_10013090; scaffold1000 TRF Tandem_Repeat 319881 319911 62 + . . scaffold1000 TRF Tandem_Repeat 328848 328887 80 + . . scaffold1000 TRF Tandem_Repeat 332590 332640 102 + . . scaffold1000 TRF Tandem_Repeat 332675 332711 74 + . . scaffold1000 GLEAN mRNA 340157 345472 0.999877 - . ID=CGI_10013091; scaffold1000 GLEAN promoter 345473 346472 0.999877 - . ID=CGI_10013091; scaffold1001 GLEAN mRNA 4766 38685 0.672255 - . ID=CGI_10007116; scaffold1001 TRF Tandem_Repeat 11372 11531 205 + . . scaffold1001 TRF Tandem_Repeat 12110 12846 1028 + . . scaffold1001 TRF Tandem_Repeat 16768 16799 57 + . . scaffold1001 WUBlastX LINE_CR1 25884 26021 26 + . . scaffold1001 WUBlastX LINE_L2 26515 27636 131 + . . scaffold1001 WUBlastX LINE_L2 26698 27627 239 + . . scaffold1001 GLEAN promoter 38686 39685 0.672255 - . ID=CGI_10007116; scaffold1001 TRF Tandem_Repeat 44269 44318 55 + . . scaffold1001 GLEAN mRNA 45472 64822 0.488754 - . ID=CGI_10007117; scaffold1001 TRF Tandem_Repeat 50360 50412 54 + . . scaffold1001 TRF Tandem_Repeat 52029 52158 93 + . . scaffold1001 TRF Tandem_Repeat 52074 52220 73 + . . scaffold1001 TRF Tandem_Repeat 56542 56625 123 + . . scaffold1001 TRF Tandem_Repeat 57057 57462 607 + . . scaffold1001 GLEAN promoter 64823 65822 0.488754 - . ID=CGI_10007117; scaffold1001 GLEAN mRNA 70498 80721 0.998017 - . ID=CGI_10007118; scaffold1001 TRF Tandem_Repeat 71449 71499 102 + . . scaffold1001 GLEAN promoter 80722 81721 0.998017 - . ID=CGI_10007118; scaffold1001 TRF Tandem_Repeat 80805 81167 548 + . . scaffold1001 TRF Tandem_Repeat 90551 90787 357 + . . scaffold1001 TRF Tandem_Repeat 90562 90826 328 + . . scaffold1001 TRF Tandem_Repeat 95786 95818 66 + . . scaffold1001 TRF Tandem_Repeat 105024 105066 86 + . . scaffold1001 GLEAN promoter 106697 107696 0.433806 + . ID=CGI_10007119; scaffold1001 GLEAN mRNA 107697 137690 0.433806 + . ID=CGI_10007119; scaffold1001 TRF Tandem_Repeat 112140 112680 682 + . . scaffold1001 TRF Tandem_Repeat 112140 112680 657 + . . scaffold1001 TRF Tandem_Repeat 115143 115865 959 + . . scaffold1001 WUBlastX LINE_RTE-X 129058 129174 29 - . . scaffold1001 WUBlastX LINE_RTE-X 129079 129180 40 - . . scaffold1001 WUBlastX LINE_RTE-X 129242 129790 139 - . . scaffold1001 WUBlastX LINE_RTE-X 129275 129733 193 - . . scaffold1001 TRF Tandem_Repeat 129944 131035 1625 + . . scaffold1001 TRF Tandem_Repeat 136467 136500 52 + . . scaffold1001 TRF Tandem_Repeat 136670 137356 866 + . . scaffold1001 WUBlastX DNA_Harbinger 146288 146656 70 - . . scaffold1001 WUBlastX DNA_Harbinger 146351 146740 240 - . . scaffold1001 TRF Tandem_Repeat 151505 151734 226 + . . scaffold1001 TRF Tandem_Repeat 151761 151953 156 + . . scaffold1001 TRF Tandem_Repeat 151761 151953 113 + . . scaffold1001 TRF Tandem_Repeat 154328 154371 88 + . . scaffold1001 TRF Tandem_Repeat 161664 161741 77 + . . scaffold1002 GLEAN promoter 1 888 1 + . ID=CGI_10003686; scaffold1002 GLEAN mRNA 889 2651 1 + . ID=CGI_10003686; scaffold1002 GLEAN promoter 3038 4037 0.571793 + . ID=CGI_10003687; scaffold1002 GLEAN mRNA 4038 4415 0.571793 + . ID=CGI_10003687; scaffold1002 TRF Tandem_Repeat 5902 5929 56 + . . scaffold1002 TRF Tandem_Repeat 7384 7446 126 + . . scaffold1002 TRF Tandem_Repeat 9211 9244 59 + . . scaffold1002 TRF Tandem_Repeat 9268 9311 88 + . . scaffold1002 TRF Tandem_Repeat 10597 10634 76 + . . scaffold1002 GLEAN mRNA 10932 12991 1 - . ID=CGI_10003688; scaffold1002 GLEAN promoter 12992 13991 1 - . ID=CGI_10003688; scaffold1002 GLEAN mRNA 29650 44646 0.999607 - . ID=CGI_10003689; scaffold1002 GLEAN promoter 44647 45646 0.999607 - . ID=CGI_10003689; scaffold1002 WUBlastX DNA_Merlin 45314 46018 359 + . . scaffold1002 GLEAN mRNA 46224 46757 1 - . ID=CGI_10003690; scaffold1002 GLEAN promoter 46758 47757 1 - . ID=CGI_10003690; scaffold1002 TRF Tandem_Repeat 47382 47406 50 + . . scaffold1002 GLEAN mRNA 53909 60544 1 - . ID=CGI_10003691; scaffold1002 TRF Tandem_Repeat 59300 59591 261 + . . scaffold1002 TRF Tandem_Repeat 59505 59595 51 + . . scaffold1002 GLEAN promoter 60545 61544 1 - . ID=CGI_10003691; scaffold1002 TRF Tandem_Repeat 63748 63827 133 + . . scaffold1002 TRF Tandem_Repeat 63893 63948 51 + . . scaffold1002 WUBlastX LINE_RTE-X 67597 67758 95 + . . scaffold1002 TRF Tandem_Repeat 69043 69092 82 + . . scaffold1002 GLEAN mRNA 70129 72687 1 - . ID=CGI_10003692; scaffold1002 GLEAN promoter 72688 73687 1 - . ID=CGI_10003692; scaffold1002 WUBlastX LINE_L2 76997 77371 249 - . . scaffold1002 WUBlastX LINE_Penelope 78017 78364 48 - . . scaffold1002 TRF Tandem_Repeat 80548 80586 78 + . . scaffold1004 GLEAN promoter 9032 10031 0.57306 + . ID=CGI_10020759; scaffold1004 GLEAN mRNA 10032 23372 0.57306 + . ID=CGI_10020759; scaffold1004 GLEAN mRNA 10170 36067 1 - . ID=CGI_10020760; scaffold1004 WUBlastX DNA_IS4EU 10461 11345 32 + . . scaffold1004 WUBlastX DNA_IS4EU 10605 11345 100 + . . scaffold1004 WUBlastX DNA_IS4EU 10803 11345 153 + . . scaffold1004 TRF Tandem_Repeat 24633 24682 91 + . . scaffold1004 TRF Tandem_Repeat 30755 30809 65 + . . scaffold1004 TRF Tandem_Repeat 32350 32379 60 + . . scaffold1004 GLEAN promoter 36068 37067 1 - . ID=CGI_10020760; scaffold1004 TRF Tandem_Repeat 45976 46015 80 + . . scaffold1004 TRF Tandem_Repeat 47182 47259 129 + . . scaffold1004 GLEAN promoter 50115 51114 0.999351 + . ID=CGI_10020761; scaffold1004 GLEAN mRNA 51115 60747 0.999351 + . ID=CGI_10020761; scaffold1004 TRF Tandem_Repeat 52379 52419 82 + . . scaffold1004 TRF Tandem_Repeat 53966 54014 89 + . . scaffold1004 TRF Tandem_Repeat 54013 54054 84 + . . scaffold1004 TRF Tandem_Repeat 57014 57072 118 + . . scaffold1004 TRF Tandem_Repeat 57141 57165 50 + . . scaffold1004 GLEAN promoter 61707 62706 0.999598 + . ID=CGI_10020762; scaffold1004 GLEAN mRNA 62707 65143 0.999598 + . ID=CGI_10020762; scaffold1004 TRF Tandem_Repeat 64797 64829 66 + . . scaffold1004 TRF Tandem_Repeat 70711 70804 188 + . . scaffold1004 TRF Tandem_Repeat 81877 81932 103 + . . scaffold1004 TRF Tandem_Repeat 83407 83438 55 + . . scaffold1004 TRF Tandem_Repeat 84835 84866 57 + . . scaffold1004 TRF Tandem_Repeat 94241 95024 1138 + . . scaffold1004 TRF Tandem_Repeat 95092 95183 175 + . . scaffold1004 TRF Tandem_Repeat 101589 101709 188 + . . scaffold1004 GLEAN mRNA 102822 115254 0.352683 - . ID=CGI_10020763; scaffold1004 TRF Tandem_Repeat 104661 105360 961 + . . scaffold1004 GLEAN promoter 115255 116254 0.352683 - . ID=CGI_10020763; scaffold1004 TRF Tandem_Repeat 119395 119520 252 + . . scaffold1004 WUBlastX LTR_Gypsy 122303 123457 950 - . . scaffold1004 WUBlastX LTR_Gypsy 123459 124946 960 - . . scaffold1004 WUBlastX LTR_Gypsy 123831 125165 737 - . . scaffold1004 WUBlastX LTR_Pao 125231 125389 26 - . . scaffold1004 WUBlastX LTR_Gypsy 125303 125380 29 - . . scaffold1004 WUBlastX LTR_Gypsy 125375 126427 121 - . . scaffold1004 WUBlastX LTR_Gypsy 125576 126427 129 - . . scaffold1004 WUBlastX LTR_Gypsy 125768 126427 184 - . . scaffold1004 TRF Tandem_Repeat 128470 128499 53 + . . scaffold1004 TRF Tandem_Repeat 131058 131107 91 + . . scaffold1004 TRF Tandem_Repeat 133971 134020 100 + . . scaffold1004 TRF Tandem_Repeat 148273 148364 184 + . . scaffold1004 TRF Tandem_Repeat 156437 156512 152 + . . scaffold1004 TRF Tandem_Repeat 157450 157481 64 + . . scaffold1004 TRF Tandem_Repeat 162359 162386 56 + . . scaffold1004 WUBlastX LINE_L1-Tx1 194104 195906 543 - . . scaffold1004 WUBlastX LINE_L1 195169 196095 89 - . . scaffold1004 WUBlastX LINE_L1-Tx1 196336 196446 22 - . . scaffold1004 WUBlastX LINE_CR1-L2 196351 196422 23 - . . scaffold1004 TRF Tandem_Repeat 196886 196917 64 + . . scaffold1004 WUBlastX LINE_L1 196996 197697 137 - . . scaffold1004 WUBlastX LINE_L1-Tx1 197158 197823 564 - . . scaffold1004 WUBlastX LINE_L1 197158 198072 163 - . . scaffold1004 WUBlastX LINE_L1 197158 198360 102 - . . scaffold1004 WUBlastX LINE_RTE-X 198467 198556 37 - . . scaffold1004 WUBlastX LINE_CR1 200578 201588 798 - . . scaffold1004 WUBlastX LINE_CR1 201585 203600 1051 - . . scaffold1004 GLEAN mRNA 205585 214300 1 - . ID=CGI_10020764; scaffold1004 TRF Tandem_Repeat 206063 207261 1328 + . . scaffold1004 TRF Tandem_Repeat 206069 207261 1363 + . . scaffold1004 TRF Tandem_Repeat 206084 206156 65 + . . scaffold1004 TRF Tandem_Repeat 206194 207261 1298 + . . scaffold1004 TRF Tandem_Repeat 209301 211476 3617 + . . scaffold1004 TRF Tandem_Repeat 209301 211476 3645 + . . scaffold1004 GLEAN promoter 214301 215300 1 - . ID=CGI_10020764; scaffold1004 WUBlastX DNA_MuDR 219886 220242 47 + . . scaffold1004 WUBlastX DNA_MuDR 220140 220787 201 + . . scaffold1004 WUBlastX DNA_MuDR 220840 221124 41 + . . scaffold1004 GLEAN promoter 222266 223265 0.684506 + . ID=CGI_10020765; scaffold1004 GLEAN mRNA 223266 223676 0.684506 + . ID=CGI_10020765; scaffold1004 WUBlastX LINE_L1-Tx1 224775 225041 88 - . . scaffold1004 WUBlastX LINE_L1 225032 225118 27 - . . scaffold1004 WUBlastX LINE_L1 225032 225100 32 - . . scaffold1004 TRF Tandem_Repeat 228809 229256 739 + . . scaffold1004 GLEAN promoter 263305 264304 0.55812 + . ID=CGI_10020766; scaffold1004 GLEAN mRNA 264305 270145 0.55812 + . ID=CGI_10020766; scaffold1004 GLEAN mRNA 274842 298566 0.682505 - . ID=CGI_10020767; scaffold1004 TRF Tandem_Repeat 277179 277409 255 + . . scaffold1004 WUBlastX LINE_Penelope 281675 282493 332 + . . scaffold1004 WUBlastX LINE_Penelope 281675 282697 242 + . . scaffold1004 WUBlastX LINE_Penelope 282628 283137 68 + . . scaffold1004 WUBlastX LINE_Penelope 282640 283005 85 + . . scaffold1004 TRF Tandem_Repeat 283613 283674 117 + . . scaffold1004 TRF Tandem_Repeat 284272 284313 84 + . . scaffold1004 TRF Tandem_Repeat 292103 292138 72 + . . scaffold1004 GLEAN promoter 298567 299566 0.682505 - . ID=CGI_10020767; scaffold1004 GLEAN promoter 300879 301878 0.660675 + . ID=CGI_10020769; scaffold1004 GLEAN mRNA 301879 316281 0.660675 + . ID=CGI_10020769; scaffold1004 TRF Tandem_Repeat 310286 310637 677 + . . scaffold1004 TRF Tandem_Repeat 311690 311797 99 + . . scaffold1004 GLEAN mRNA 317682 327140 0.999996 - . ID=CGI_10020770; scaffold1004 GLEAN promoter 327141 328140 0.999996 - . ID=CGI_10020770; scaffold1004 GLEAN promoter 330233 331232 0.702335 + . ID=CGI_10020771; scaffold1004 GLEAN mRNA 331233 336382 0.702335 + . ID=CGI_10020771; scaffold1004 TRF Tandem_Repeat 331669 331765 79 + . . scaffold1004 GLEAN promoter 336555 337554 1 + . ID=CGI_10020772; scaffold1004 GLEAN mRNA 337555 338034 1 + . ID=CGI_10020772; scaffold1004 WUBlastX LINE_RTE-X 339759 340061 74 - . . scaffold1004 WUBlastX LINE_RTE-X 339849 340061 98 - . . scaffold1004 WUBlastX LINE_RTE-X 339849 340100 51 - . . scaffold1004 TRF Tandem_Repeat 341097 341138 84 + . . scaffold1004 TRF Tandem_Repeat 342499 342553 110 + . . scaffold1004 GLEAN mRNA 343722 351655 0.999999 - . ID=CGI_10020773; scaffold1004 GLEAN promoter 351656 352655 0.999999 - . ID=CGI_10020773; scaffold1004 GLEAN mRNA 361076 370533 0.733727 - . ID=CGI_10020774; scaffold1004 GLEAN promoter 370534 371533 0.733727 - . ID=CGI_10020774; scaffold1004 GLEAN mRNA 379984 380205 0.727785 - . ID=CGI_10020775; scaffold1004 GLEAN promoter 380206 381205 0.727785 - . ID=CGI_10020775; scaffold1004 GLEAN mRNA 384352 411879 0.576977 - . ID=CGI_10020776; scaffold1004 TRF Tandem_Repeat 399948 400262 186 + . . scaffold1004 GLEAN promoter 411880 412879 0.576977 - . ID=CGI_10020776; scaffold1004 TRF Tandem_Repeat 417158 417199 84 + . . scaffold1004 GLEAN promoter 419212 420211 1 + . ID=CGI_10020777; scaffold1004 GLEAN mRNA 420212 424564 1 + . ID=CGI_10020777; scaffold1004 TRF Tandem_Repeat 428903 429697 1074 + . . scaffold1004 GLEAN mRNA 430495 433711 0.999986 - . ID=CGI_10020778; scaffold1004 TRF Tandem_Repeat 431971 431999 58 + . . scaffold1004 GLEAN promoter 433712 434711 0.999986 - . ID=CGI_10020778; scaffold1004 TRF Tandem_Repeat 435874 436081 274 + . . scaffold1004 TRF Tandem_Repeat 435874 436081 285 + . . scaffold1004 GLEAN promoter 437292 438291 0.945446 + . ID=CGI_10020779; scaffold1004 GLEAN mRNA 438292 440825 0.945446 + . ID=CGI_10020779; scaffold1004 TRF Tandem_Repeat 447357 448295 1159 + . . scaffold1004 TRF Tandem_Repeat 447488 448294 961 + . . scaffold1004 GLEAN promoter 448774 449773 0.990978 + . ID=CGI_10020780; scaffold1004 GLEAN mRNA 449774 458246 0.990978 + . ID=CGI_10020780; scaffold1004 TRF Tandem_Repeat 450125 450178 99 + . . scaffold1004 TRF Tandem_Repeat 450405 450436 64 + . . scaffold1004 GLEAN mRNA 463295 491476 0.997732 - . ID=CGI_10020781; scaffold1004 WUBlastX DNA_Kolobok-Hyd 463712 464392 35 - . . scaffold1004 TRF Tandem_Repeat 478482 478526 90 + . . scaffold1004 TRF Tandem_Repeat 485316 485362 66 + . . scaffold1004 WUBlastX LINE_RTE-BovB 485553 486074 99 - . . scaffold1004 WUBlastX LINE_RTE-RTE 485952 486098 46 - . . scaffold1004 WUBlastX LINE_RTE-BovB 486212 486268 25 - . . scaffold1004 WUBlastX LINE_RTE-BovB 486256 487689 513 - . . scaffold1004 WUBlastX LINE_RTE-BovB 487249 487770 43 - . . scaffold1004 GLEAN promoter 491272 492271 1 + . ID=CGI_10020782; scaffold1004 GLEAN promoter 491477 492476 0.997732 - . ID=CGI_10020781; scaffold1004 TRF Tandem_Repeat 491829 491865 74 + . . scaffold1004 GLEAN mRNA 492272 495618 1 + . ID=CGI_10020782; scaffold1004 GLEAN promoter 498651 499650 0.925076 + . ID=CGI_10020783; scaffold1004 GLEAN mRNA 499651 508380 0.925076 + . ID=CGI_10020783; scaffold1004 TRF Tandem_Repeat 501993 502039 85 + . . scaffold1004 TRF Tandem_Repeat 503087 503127 82 + . . scaffold1004 GLEAN promoter 515359 516358 0.446372 + . ID=CGI_10020784; scaffold1004 GLEAN mRNA 516359 526744 0.446372 + . ID=CGI_10020784; scaffold1004 TRF Tandem_Repeat 524723 525106 624 + . . scaffold1004 GLEAN mRNA 528126 532267 0.836238 - . ID=CGI_10020785; scaffold1004 GLEAN promoter 531746 532745 0.544674 + . ID=CGI_10020786; scaffold1004 GLEAN promoter 532268 533267 0.836238 - . ID=CGI_10020785; scaffold1004 GLEAN mRNA 532746 544062 0.544674 + . ID=CGI_10020786; scaffold1004 GLEAN promoter 544568 545567 0.997363 + . ID=CGI_10020787; scaffold1004 GLEAN mRNA 545568 555756 0.997363 + . ID=CGI_10020787; scaffold1004 GLEAN mRNA 548155 551880 0.999676 - . ID=CGI_10020788; scaffold1004 TRF Tandem_Repeat 549194 549245 52 + . . scaffold1004 TRF Tandem_Repeat 549245 549281 74 + . . scaffold1004 GLEAN promoter 551881 552880 0.999676 - . ID=CGI_10020788; scaffold1004 TRF Tandem_Repeat 552211 552240 60 + . . scaffold1004 TRF Tandem_Repeat 552250 552397 118 + . . scaffold1004 TRF Tandem_Repeat 552251 552397 132 + . . scaffold1004 TRF Tandem_Repeat 552251 552397 110 + . . scaffold1004 GLEAN mRNA 557336 572421 0.999621 - . ID=CGI_10020789; scaffold1004 GLEAN promoter 572422 573421 0.999621 - . ID=CGI_10020789; scaffold1004 GLEAN mRNA 574106 580500 1 - . ID=CGI_10020790; scaffold1004 GLEAN promoter 580501 581500 1 - . ID=CGI_10020790; scaffold1004 WUBlastX DNA_PiggyBac 583982 585556 792 - . . scaffold1004 WUBlastX DNA_PiggyBac 584858 585697 153 - . . scaffold1004 GLEAN mRNA 592729 596546 0.995376 - . ID=CGI_10020791; scaffold1004 TRF Tandem_Repeat 593059 593092 50 + . . scaffold1004 GLEAN promoter 596547 597546 0.995376 - . ID=CGI_10020791; scaffold1004 TRF Tandem_Repeat 598158 598235 131 + . . scaffold1004 TRF Tandem_Repeat 600514 600555 84 + . . scaffold1004 TRF Tandem_Repeat 607794 607828 52 + . . scaffold1004 GLEAN promoter 611139 612138 0.996649 + . ID=CGI_10020792; scaffold1004 GLEAN mRNA 612139 623398 0.996649 + . ID=CGI_10020792; scaffold1004 GLEAN mRNA 624854 636407 0.734368 - . ID=CGI_10020793; scaffold1004 TRF Tandem_Repeat 634169 634624 756 + . . scaffold1004 GLEAN promoter 636408 637407 0.734368 - . ID=CGI_10020793; scaffold1004 WUBlastX DNA_TcMar-m44 636453 637337 559 - . . scaffold1004 GLEAN promoter 655362 656361 1 + . ID=CGI_10020794; scaffold1004 GLEAN mRNA 656362 660774 1 + . ID=CGI_10020794; scaffold1006 GLEAN promoter 10665 11664 0.53754 + . ID=CGI_10002343; scaffold1006 GLEAN mRNA 11665 38727 0.53754 + . ID=CGI_10002343; scaffold1006 TRF Tandem_Repeat 31076 31139 128 + . . scaffold1006 TRF Tandem_Repeat 31156 31194 51 + . . scaffold1006 WUBlastX LTR_Gypsy 40044 40376 74 - . . scaffold1006 WUBlastX LTR_Gypsy 40086 40571 73 - . . scaffold1006 WUBlastX LTR_Gypsy 40089 41042 45 - . . scaffold1006 GLEAN promoter 41604 42603 0.999372 + . ID=CGI_10002344; scaffold1006 GLEAN mRNA 42604 43053 0.999372 + . ID=CGI_10002344; scaffold1009 TRF Tandem_Repeat 6657 7018 440 + . . scaffold1009 WUBlastX LINE_L1-Tx1 8371 8706 35 - . . scaffold1009 WUBlastX LINE_L1-Tx1 8428 9033 48 - . . scaffold1009 WUBlastX LINE_L1-Tx1 8446 8721 56 - . . scaffold1009 WUBlastX LINE_RTE-X 13250 13339 37 + . . scaffold1009 WUBlastX LINE_RTE-X 13390 13482 28 + . . scaffold1009 WUBlastX LINE_RTE-X 23137 23445 47 - . . scaffold1009 WUBlastX LINE_RTE-X 23443 23679 64 - . . scaffold1009 TRF Tandem_Repeat 33087 33134 60 + . . scaffold1009 GLEAN promoter 33878 34877 1 + . ID=CGI_10028709; scaffold1009 GLEAN mRNA 34878 36015 1 + . ID=CGI_10028709; scaffold1009 GLEAN promoter 43703 44702 1 + . ID=CGI_10028710; scaffold1009 GLEAN mRNA 44703 45405 1 + . ID=CGI_10028710; scaffold1009 TRF Tandem_Repeat 47757 47808 63 + . . scaffold1009 GLEAN promoter 58562 59561 1 + . ID=CGI_10028711; scaffold1009 GLEAN mRNA 59562 61331 1 + . ID=CGI_10028711; scaffold1009 TRF Tandem_Repeat 62110 62168 118 + . . scaffold1009 GLEAN promoter 62741 63740 1 + . ID=CGI_10028712; scaffold1009 GLEAN mRNA 63741 66308 1 + . ID=CGI_10028712; scaffold1009 TRF Tandem_Repeat 66585 66746 224 + . . scaffold1009 GLEAN mRNA 68616 69525 1 - . ID=CGI_10028713; scaffold1009 GLEAN promoter 69526 70525 1 - . ID=CGI_10028713; scaffold1009 GLEAN mRNA 70489 71123 1 - . ID=CGI_10028714; scaffold1009 GLEAN promoter 71124 72123 1 - . ID=CGI_10028714; scaffold1009 GLEAN mRNA 71732 72518 1 - . ID=CGI_10028715; scaffold1009 GLEAN promoter 72519 73518 1 - . ID=CGI_10028715; scaffold1009 TRF Tandem_Repeat 75115 75139 50 + . . scaffold1009 GLEAN mRNA 75219 75938 1 - . ID=CGI_10028716; scaffold1009 GLEAN promoter 75939 76938 1 - . ID=CGI_10028716; scaffold1009 GLEAN mRNA 78934 104217 0.637996 - . ID=CGI_10028717; scaffold1009 TRF Tandem_Repeat 93210 93599 396 + . . scaffold1009 TRF Tandem_Repeat 93774 93848 150 + . . scaffold1009 TRF Tandem_Repeat 99960 100011 97 + . . scaffold1009 GLEAN promoter 104218 105217 0.637996 - . ID=CGI_10028717; scaffold1009 GLEAN mRNA 105043 129242 0.999571 - . ID=CGI_10028718; scaffold1009 TRF Tandem_Repeat 108832 108873 84 + . . scaffold1009 TRF Tandem_Repeat 112506 112555 66 + . . scaffold1009 TRF Tandem_Repeat 116218 116253 72 + . . scaffold1009 TRF Tandem_Repeat 117425 117465 73 + . . scaffold1009 TRF Tandem_Repeat 128400 128459 120 + . . scaffold1009 GLEAN promoter 129243 130242 0.999571 - . ID=CGI_10028718; scaffold1009 GLEAN promoter 142472 143471 0.373363 + . ID=CGI_10028719; scaffold1009 GLEAN mRNA 143472 160185 0.373363 + . ID=CGI_10028719; scaffold1009 WUBlastX LTR_Ngaro 146783 146965 62 - . . scaffold1009 WUBlastX LTR_Ngaro 147324 148268 165 - . . scaffold1009 WUBlastX LTR_Ngaro 147562 147879 227 - . . scaffold1009 WUBlastX LTR_Ngaro 147878 148510 182 - . . scaffold1009 TRF Tandem_Repeat 148675 149434 1288 + . . scaffold1009 GLEAN promoter 160389 161388 0.371395 + . ID=CGI_10028720; scaffold1009 GLEAN mRNA 161389 162612 0.371395 + . ID=CGI_10028720; scaffold1009 GLEAN mRNA 163164 171986 0.959931 - . ID=CGI_10028721; scaffold1009 WUBlastX LTR_Copia 165216 166661 870 - . . scaffold1009 WUBlastX LTR_Copia 165270 166955 204 - . . scaffold1009 WUBlastX LTR_Gypsy 167534 168688 145 - . . scaffold1009 WUBlastX LTR_Copia 167708 170077 1469 - . . scaffold1009 WUBlastX LTR_Lenti 169952 170104 23 - . . scaffold1009 GLEAN promoter 171987 172986 0.959931 - . ID=CGI_10028721; scaffold1009 GLEAN mRNA 172174 173395 1 - . ID=CGI_10028722; scaffold1009 GLEAN promoter 173396 174395 1 - . ID=CGI_10028722; scaffold1009 TRF Tandem_Repeat 181907 181975 57 + . . scaffold1009 TRF Tandem_Repeat 181910 181972 63 + . . scaffold1009 TRF Tandem_Repeat 181923 181960 76 + . . scaffold1009 TRF Tandem_Repeat 182225 182251 54 + . . scaffold1009 TRF Tandem_Repeat 197132 197222 164 + . . scaffold1009 WUBlastX LINE_L1-Tx1 197228 197317 42 + . . scaffold1009 WUBlastX LINE_L1-Tx1 197272 197697 411 + . . scaffold1009 WUBlastX LINE_CR1 197380 197778 107 + . . scaffold1009 WUBlastX LINE_L1-Tx1 199325 200641 313 + . . scaffold1009 WUBlastX LTR_Gypsy 209389 209448 21 + . . scaffold1009 WUBlastX LTR_Gypsy 209896 210576 289 + . . scaffold1009 WUBlastX LTR_Gypsy 210046 210801 153 + . . scaffold1009 WUBlastX LTR_Gypsy 210046 210576 426 + . . scaffold1009 TRF Tandem_Repeat 226133 226175 86 + . . scaffold1009 TRF Tandem_Repeat 226552 226610 82 + . . scaffold1009 WUBlastX LINE_Proto2 238712 240583 194 - . . scaffold1009 WUBlastX DNA_TcMar-Marin 245298 245375 21 + . . scaffold1009 WUBlastX DNA_TcMar-Marin 245810 246187 42 + . . scaffold1009 WUBlastX DNA_TcMar-Marin 245813 246070 56 + . . scaffold1009 WUBlastX DNA_TcMar-Marin 246201 246422 83 + . . scaffold1009 WUBlastX DNA_TcMar-Marin 246216 246536 81 + . . scaffold1009 WUBlastX DNA_TcMar-Marin 246246 246428 84 + . . scaffold1009 TRF Tandem_Repeat 246698 246743 92 + . . scaffold1009 GLEAN mRNA 246787 271005 0.99497 - . ID=CGI_10028723; scaffold1009 WUBlastX LTR_Pao 251705 253387 633 - . . scaffold1009 TRF Tandem_Repeat 255600 255638 69 + . . scaffold1009 TRF Tandem_Repeat 256496 256564 138 + . . scaffold1009 TRF Tandem_Repeat 266585 267364 1065 + . . scaffold1009 TRF Tandem_Repeat 267533 267572 53 + . . scaffold1009 GLEAN promoter 271006 272005 0.99497 - . ID=CGI_10028723; scaffold1009 TRF Tandem_Repeat 271301 271355 110 + . . scaffold1009 TRF Tandem_Repeat 274160 274217 66 + . . scaffold1009 GLEAN mRNA 275463 287867 0.999997 - . ID=CGI_10028724; scaffold1009 TRF Tandem_Repeat 279619 279688 133 + . . scaffold1009 TRF Tandem_Repeat 282274 282386 106 + . . scaffold1009 TRF Tandem_Repeat 282274 282386 67 + . . scaffold1009 TRF Tandem_Repeat 282298 282387 85 + . . scaffold1009 GLEAN promoter 287868 288867 0.999997 - . ID=CGI_10028724; scaffold1009 WUBlastX LINE_L2 288632 289102 137 + . . scaffold1009 GLEAN promoter 295445 296444 1 + . ID=CGI_10028725; scaffold1009 TRF Tandem_Repeat 296087 296121 61 + . . scaffold1009 GLEAN mRNA 296445 298932 1 + . ID=CGI_10028725; scaffold1009 TRF Tandem_Repeat 299098 299144 94 + . . scaffold1009 GLEAN mRNA 301237 304609 0.963512 - . ID=CGI_10028726; scaffold1009 GLEAN promoter 304610 305609 0.963512 - . ID=CGI_10028726; scaffold1009 TRF Tandem_Repeat 305454 305493 80 + . . scaffold1009 TRF Tandem_Repeat 317912 317954 77 + . . scaffold1009 TRF Tandem_Repeat 319196 319276 162 + . . scaffold1009 TRF Tandem_Repeat 325528 325575 96 + . . scaffold1009 WUBlastX DNA_Harbinger 325667 325912 132 + . . scaffold1009 WUBlastX DNA_Harbinger 326654 327088 242 - . . scaffold1009 WUBlastX DNA_Harbinger 326750 327052 244 - . . scaffold1009 WUBlastX DNA_Harbinger 327034 327687 397 - . . scaffold1009 GLEAN promoter 332988 333987 1 + . ID=CGI_10028727; scaffold1009 GLEAN mRNA 333988 336968 1 + . ID=CGI_10028727; scaffold1009 GLEAN promoter 339880 340879 0.349544 + . ID=CGI_10028728; scaffold1009 TRF Tandem_Repeat 340275 340319 90 + . . scaffold1009 GLEAN mRNA 340880 346321 0.349544 + . ID=CGI_10028728; scaffold1009 TRF Tandem_Repeat 357204 357337 91 + . . scaffold1009 TRF Tandem_Repeat 357749 357797 98 + . . scaffold1009 TRF Tandem_Repeat 358336 358372 65 + . . scaffold1009 TRF Tandem_Repeat 371228 371277 100 + . . scaffold1009 TRF Tandem_Repeat 371967 372067 112 + . . scaffold1009 TRF Tandem_Repeat 372139 372228 90 + . . scaffold1009 TRF Tandem_Repeat 372274 372447 147 + . . scaffold1009 GLEAN promoter 373475 374474 0.989963 + . ID=CGI_10028729; scaffold1009 GLEAN mRNA 374475 388948 0.989963 + . ID=CGI_10028729; scaffold1009 GLEAN mRNA 385615 401042 0.536993 - . ID=CGI_10028730; scaffold1009 GLEAN promoter 401043 402042 0.536993 - . ID=CGI_10028730; scaffold1009 GLEAN mRNA 401312 403218 0.999423 - . ID=CGI_10028731; scaffold1009 TRF Tandem_Repeat 401787 401844 116 + . . scaffold1009 GLEAN promoter 403219 404218 0.999423 - . ID=CGI_10028731; scaffold1009 GLEAN mRNA 414066 425148 0.992384 - . ID=CGI_10028732; scaffold1009 WUBlastX DNA_hAT-Tip100 423208 423471 36 + . . scaffold1009 WUBlastX DNA_hAT-Tip100 423232 423387 104 + . . scaffold1009 WUBlastX DNA_hAT-Tip100 423417 424004 145 + . . scaffold1009 WUBlastX DNA_hAT-Tip100 423519 423953 261 + . . scaffold1009 WUBlastX DNA_hAT-Tip100 423956 424078 38 + . . scaffold1009 WUBlastX DNA_hAT-Tip100 424075 424593 193 + . . scaffold1009 GLEAN promoter 425149 426148 0.992384 - . ID=CGI_10028732; scaffold1009 TRF Tandem_Repeat 429010 429180 105 + . . scaffold1009 TRF Tandem_Repeat 429049 429139 82 + . . scaffold1009 TRF Tandem_Repeat 429125 429185 50 + . . scaffold1009 GLEAN promoter 429368 430367 1 + . ID=CGI_10028733; scaffold1009 GLEAN mRNA 430368 431934 1 + . ID=CGI_10028733; scaffold1009 WUBlastX DNA_IS4EU 430368 430664 83 + . . scaffold1009 WUBlastX DNA_Kolobok-IS4 431527 431706 34 + . . scaffold1009 WUBlastX DNA_IS4EU 431572 431709 45 + . . scaffold1009 WUBlastX DNA_IS4EU 431830 432531 414 + . . scaffold1009 WUBlastX DNA_IS4EU 432521 432637 47 + . . scaffold1009 WUBlastX DNA_IS4EU 432521 432658 34 + . . scaffold1009 WUBlastX DNA_IS4EU 433548 433742 76 - . . scaffold1009 WUBlastX DNA_IS4EU 434395 434643 38 - . . scaffold1009 WUBlastX DNA_IS4EU 434470 434619 84 - . . scaffold1009 WUBlastX DNA_IS4EU 436291 436461 28 - . . scaffold1009 GLEAN mRNA 439064 445307 0.642636 - . ID=CGI_10028735; scaffold1009 TRF Tandem_Repeat 441790 441840 50 + . . scaffold1009 GLEAN promoter 445308 446307 0.642636 - . ID=CGI_10028735; scaffold1009 GLEAN mRNA 448516 450870 0.999999 - . ID=CGI_10028736; scaffold1009 GLEAN promoter 450871 451870 0.999999 - . ID=CGI_10028736; scaffold1009 WUBlastX LINE_Penelope 456279 456503 30 + . . scaffold1009 WUBlastX LINE_Penelope 456590 456835 22 + . . scaffold1009 WUBlastX LINE_RTE-X 457252 457809 126 + . . scaffold1009 WUBlastX LINE_RTE-X 457803 457880 24 + . . scaffold1009 WUBlastX LINE_RTE-X 457835 458209 90 + . . scaffold1009 WUBlastX LINE_RTE-X 457835 458350 69 + . . scaffold1009 WUBlastX LINE_RTE-X 457895 458200 105 + . . scaffold1009 WUBlastX LINE_RTE-X 458360 458503 55 + . . scaffold1009 WUBlastX LTR_DIRS 460209 460976 128 - . . scaffold1009 WUBlastX LTR_DIRS 461315 462745 327 - . . scaffold1009 WUBlastX LTR_Gypsy 462419 462898 38 - . . scaffold1009 WUBlastX LTR_DIRS 462419 462808 83 - . . scaffold1009 WUBlastX LTR_DIRS 462909 463118 112 - . . scaffold1009 WUBlastX LTR_DIRS 463032 463313 31 - . . scaffold1009 WUBlastX LTR_DIRS 463420 463626 88 - . . scaffold1009 WUBlastX LTR_Gypsy 463821 463913 38 - . . scaffold1009 GLEAN mRNA 468394 483197 0.999676 - . ID=CGI_10028737; scaffold1009 TRF Tandem_Repeat 469749 469868 204 + . . scaffold1009 TRF Tandem_Repeat 476387 476731 548 + . . scaffold1009 GLEAN promoter 483198 484197 0.999676 - . ID=CGI_10028737; scaffold1009 GLEAN mRNA 486872 502575 0.999001 - . ID=CGI_10028738; scaffold1009 TRF Tandem_Repeat 491464 491518 110 + . . scaffold1009 WUBlastX DNA_hAT 491703 491867 102 + . . scaffold1009 WUBlastX DNA_hAT 492737 492901 66 + . . scaffold1009 WUBlastX DNA_hAT 493213 493449 84 + . . scaffold1009 WUBlastX DNA_hAT 494087 494239 89 + . . scaffold1009 WUBlastX DNA_hAT 494582 494689 47 + . . scaffold1009 WUBlastX DNA_hAT 494985 495083 32 + . . scaffold1009 WUBlastX DNA_hAT 495384 495569 53 + . . scaffold1009 WUBlastX DNA_hAT 495770 496030 135 + . . scaffold1009 WUBlastX DNA_hAT 497005 497202 60 + . . scaffold1009 WUBlastX DNA_hAT 497569 497703 35 + . . scaffold1009 GLEAN promoter 502576 503575 0.999001 - . ID=CGI_10028738; scaffold1009 WUBlastX DNA_PiggyBac 511687 512199 206 - . . scaffold1009 WUBlastX DNA_PiggyBac 516407 516655 65 - . . scaffold1009 WUBlastX DNA_PiggyBac 516416 516616 99 - . . scaffold1009 WUBlastX DNA_PiggyBac 516745 516897 35 - . . scaffold1009 TRF Tandem_Repeat 517031 517082 86 + . . scaffold1009 WUBlastX DNA_PiggyBac 517333 517491 29 - . . scaffold1009 WUBlastX DNA_PiggyBac 517369 517617 52 - . . scaffold1009 WUBlastX DNA_PiggyBac 517369 517539 84 - . . scaffold1009 WUBlastX DNA_PiggyBac 517369 517671 31 - . . scaffold1009 TRF Tandem_Repeat 517697 517742 60 + . . scaffold1009 WUBlastX DNA_PiggyBac 518370 518819 87 - . . scaffold1009 GLEAN mRNA 520317 530152 0.739636 - . ID=CGI_10028739; scaffold1009 TRF Tandem_Repeat 522418 523211 1218 + . . scaffold1009 TRF Tandem_Repeat 523236 523285 55 + . . scaffold1009 TRF Tandem_Repeat 523243 523294 59 + . . scaffold1009 GLEAN promoter 530153 531152 0.739636 - . ID=CGI_10028739; scaffold1009 TRF Tandem_Repeat 531790 531820 55 + . . scaffold1009 TRF Tandem_Repeat 533831 533971 129 + . . scaffold1009 TRF Tandem_Repeat 535492 535625 94 + . . scaffold1009 WUBlastX DNA_TcMar-Marin 541265 541723 164 - . . scaffold1009 WUBlastX DNA_TcMar-Marin 541355 541675 186 - . . scaffold1009 WUBlastX DNA_TcMar-Marin 541678 541806 32 - . . scaffold1009 TRF Tandem_Repeat 545928 545979 59 + . . scaffold1009 WUBlastX LTR_Gypsy 545996 546271 143 - . . scaffold1009 WUBlastX LTR_Gypsy 546267 546473 25 - . . scaffold1009 WUBlastX LTR_Gypsy 546324 546500 51 - . . scaffold1009 WUBlastX LTR_Gypsy 546390 546500 60 - . . scaffold1009 WUBlastX LTR_Gypsy 546500 546604 58 - . . scaffold1009 WUBlastX LTR_Gypsy 547447 547692 70 - . . scaffold1009 WUBlastX LTR_Gypsy 547694 548059 165 - . . scaffold1009 WUBlastX LTR_Gypsy 549094 549636 367 - . . scaffold1009 WUBlastX DNA_hAT-hATw 551873 553114 331 - . . scaffold1009 WUBlastX DNA_hAT-hATw 553006 554271 174 - . . scaffold1009 GLEAN mRNA 582141 588813 0.674242 - . ID=CGI_10028740; scaffold1009 GLEAN promoter 588814 589813 0.674242 - . ID=CGI_10028740; scaffold1009 GLEAN mRNA 611165 611491 0.618241 - . ID=CGI_10028741; scaffold1009 GLEAN promoter 611492 612491 0.618241 - . ID=CGI_10028741; scaffold1009 GLEAN promoter 613408 614407 0.999676 + . ID=CGI_10028742; scaffold1009 GLEAN mRNA 614408 632773 0.999676 + . ID=CGI_10028742; scaffold1009 TRF Tandem_Repeat 615206 615573 556 + . . scaffold1009 GLEAN mRNA 621184 626319 1 - . ID=CGI_10028743; scaffold1009 TRF Tandem_Repeat 622220 622251 64 + . . scaffold1009 GLEAN promoter 626320 627319 1 - . ID=CGI_10028743; scaffold1009 TRF Tandem_Repeat 630372 630701 213 + . . scaffold1009 TRF Tandem_Repeat 630378 630701 219 + . . scaffold1009 WUBlastX LINE_RTE-X 635137 636183 395 - . . scaffold1009 GLEAN mRNA 639471 654598 0.999925 - . ID=CGI_10028744; scaffold1009 TRF Tandem_Repeat 642206 642377 119 + . . scaffold1009 TRF Tandem_Repeat 642428 642719 331 + . . scaffold1009 TRF Tandem_Repeat 652291 652960 828 + . . scaffold1009 GLEAN promoter 654599 655598 0.999925 - . ID=CGI_10028744; scaffold1009 GLEAN promoter 655239 656238 0.999351 + . ID=CGI_10028745; scaffold1009 GLEAN mRNA 656239 662567 0.999351 + . ID=CGI_10028745; scaffold1009 GLEAN mRNA 666300 667492 0.999925 - . ID=CGI_10028746; scaffold1009 GLEAN promoter 666921 667920 1 + . ID=CGI_10028747; scaffold1009 GLEAN promoter 667493 668492 0.999925 - . ID=CGI_10028746; scaffold1009 GLEAN mRNA 667921 673310 1 + . ID=CGI_10028747; scaffold1009 GLEAN mRNA 673569 674573 0.999984 - . ID=CGI_10028748; scaffold1009 WUBlastX LINE_L1 673800 674537 31 - . . scaffold1009 GLEAN promoter 674574 675573 0.999984 - . ID=CGI_10028748; scaffold1009 GLEAN mRNA 679008 680465 0.998274 - . ID=CGI_10028749; scaffold1009 GLEAN promoter 679368 680367 0.999998 + . ID=CGI_10028750; scaffold1009 GLEAN mRNA 680368 712925 0.999998 + . ID=CGI_10028750; scaffold1009 GLEAN promoter 680466 681465 0.998274 - . ID=CGI_10028749; scaffold1009 GLEAN mRNA 680468 688370 0.937846 - . ID=CGI_10028751; scaffold1009 TRF Tandem_Repeat 684264 684341 133 + . . scaffold1009 GLEAN promoter 688371 689370 0.937846 - . ID=CGI_10028751; scaffold1009 TRF Tandem_Repeat 689191 689564 324 + . . scaffold1009 TRF Tandem_Repeat 689191 689564 418 + . . scaffold1009 TRF Tandem_Repeat 690102 690822 682 + . . scaffold1009 TRF Tandem_Repeat 690108 690822 444 + . . scaffold1009 TRF Tandem_Repeat 700659 700697 78 + . . scaffold1009 TRF Tandem_Repeat 710954 711176 403 + . . scaffold1009 GLEAN mRNA 712736 713703 1 - . ID=CGI_10028752; scaffold1009 GLEAN promoter 712944 713943 1 + . ID=CGI_10028753; scaffold1009 GLEAN promoter 713704 714703 1 - . ID=CGI_10028752; scaffold1009 GLEAN mRNA 713944 719230 1 + . ID=CGI_10028753; scaffold1009 TRF Tandem_Repeat 714498 714543 60 + . . scaffold1009 TRF Tandem_Repeat 716328 716691 457 + . . scaffold1009 GLEAN promoter 723801 724800 0.837368 + . ID=CGI_10028754; scaffold1009 GLEAN mRNA 724801 729287 0.837368 + . ID=CGI_10028754; scaffold1009 TRF Tandem_Repeat 732499 735337 2354 + . . scaffold1009 TRF Tandem_Repeat 732499 735337 1589 + . . scaffold1009 TRF Tandem_Repeat 732499 733342 862 + . . scaffold1009 TRF Tandem_Repeat 733344 734510 470 + . . scaffold1009 TRF Tandem_Repeat 734541 735332 445 + . . scaffold1009 TRF Tandem_Repeat 734806 735333 639 + . . scaffold1009 GLEAN mRNA 737931 738863 0.990797 - . ID=CGI_10028755; scaffold1009 GLEAN promoter 738864 739863 0.990797 - . ID=CGI_10028755; scaffold1009 TRF Tandem_Repeat 740057 740098 84 + . . scaffold1009 TRF Tandem_Repeat 742584 742636 99 + . . scaffold1009 GLEAN mRNA 743456 744292 0.59015 - . ID=CGI_10028756; scaffold1009 GLEAN promoter 744293 745292 0.59015 - . ID=CGI_10028756; scaffold1009 GLEAN promoter 745682 746681 1 + . ID=CGI_10028757; scaffold1009 GLEAN mRNA 746682 748355 1 + . ID=CGI_10028757; scaffold1009 GLEAN mRNA 749055 758501 1 - . ID=CGI_10028758; scaffold1009 TRF Tandem_Repeat 749518 749884 513 + . . scaffold1009 TRF Tandem_Repeat 749518 749884 428 + . . scaffold1009 WUBlastX LINE_RTE-X 756697 756897 61 - . . scaffold1009 WUBlastX LINE_RTE-X 756739 756933 46 - . . scaffold1009 TRF Tandem_Repeat 758271 758319 98 + . . scaffold1009 GLEAN promoter 758502 759501 1 - . ID=CGI_10028758; scaffold1009 WUBlastX LINE_RTE-X 759730 760377 165 + . . scaffold1009 WUBlastX LINE_RTE-X 759826 760356 242 + . . scaffold1009 GLEAN promoter 760637 761636 0.999372 + . ID=CGI_10028760; scaffold1009 GLEAN mRNA 761174 761560 0.632461 - . ID=CGI_10028759; scaffold1009 GLEAN promoter 761561 762560 0.632461 - . ID=CGI_10028759; scaffold1009 GLEAN mRNA 761637 761981 0.999372 + . ID=CGI_10028760; scaffold1009 GLEAN promoter 766550 767549 1 + . ID=CGI_10028761; scaffold1009 GLEAN mRNA 767550 770496 1 + . ID=CGI_10028761; scaffold1009 TRF Tandem_Repeat 773962 774027 50 + . . scaffold1009 TRF Tandem_Repeat 776823 776858 72 + . . scaffold1009 TRF Tandem_Repeat 776919 776949 62 + . . scaffold1009 GLEAN promoter 779209 780208 0.648556 + . ID=CGI_10028762; scaffold1009 GLEAN mRNA 780209 782748 0.648556 + . ID=CGI_10028762; scaffold1009 WUBlastX LINE_L2 786071 787123 212 - . . scaffold1009 WUBlastX LINE_L1-Tx1 790258 790437 21 - . . scaffold1009 WUBlastX LINE_RTE-BovB 790420 790680 99 - . . scaffold1009 WUBlastX LINE_RTE-BovB 790665 791003 141 - . . scaffold1009 WUBlastX LINE_RTE-BovB 790992 791117 81 - . . scaffold1009 WUBlastX LINE_RTE-BovB 791022 791135 74 - . . scaffold1009 WUBlastX LINE_RTE-BovB 791156 791476 224 - . . scaffold1009 WUBlastX LINE_RTE-BovB 791431 792270 117 - . . scaffold1009 WUBlastX LINE_RTE-BovB 792266 792472 116 - . . scaffold1009 WUBlastX LINE_L1 792480 792560 28 - . . scaffold1009 WUBlastX LINE_RTE-BovB 792499 792633 47 - . . scaffold1009 GLEAN mRNA 796284 807727 0.387799 - . ID=CGI_10028763; scaffold1009 TRF Tandem_Repeat 798339 798698 371 + . . scaffold1009 GLEAN promoter 801465 802464 0.994697 + . ID=CGI_10028764; scaffold1009 GLEAN mRNA 802465 805561 0.994697 + . ID=CGI_10028764; scaffold1009 WUBlastX LINE_RTE-BovB 802731 802928 93 - . . scaffold1009 WUBlastX LINE_RTE-BovB 803038 803106 24 - . . scaffold1009 WUBlastX LINE_RTE-BovB 803136 803255 81 - . . scaffold1009 GLEAN promoter 807728 808727 0.387799 - . ID=CGI_10028763; scaffold1009 WUBlastX LINE_RTE-BovB 811684 812997 180 - . . scaffold1009 WUBlastX LINE_RTE-BovB 811999 813102 251 - . . scaffold1009 WUBlastX LINE_RTE-BovB 812248 813138 326 - . . scaffold1009 WUBlastX LINE_RTE-BovB 813152 814081 223 - . . scaffold1009 WUBlastX LINE_RTE-BovB 813560 814081 253 - . . scaffold1009 GLEAN mRNA 826910 827587 0.836238 - . ID=CGI_10028766; scaffold1009 GLEAN promoter 827588 828587 0.836238 - . ID=CGI_10028766; scaffold1009 TRF Tandem_Repeat 831968 831999 64 + . . scaffold1009 TRF Tandem_Repeat 839370 839591 410 + . . scaffold1009 TRF Tandem_Repeat 840592 840830 424 + . . scaffold1009 TRF Tandem_Repeat 841140 842081 679 + . . scaffold1009 TRF Tandem_Repeat 841147 842077 614 + . . scaffold1009 TRF Tandem_Repeat 843872 844678 688 + . . scaffold1009 GLEAN promoter 851065 852064 0.999946 + . ID=CGI_10028767; scaffold1009 GLEAN mRNA 852065 852745 0.999946 + . ID=CGI_10028767; scaffold1009 TRF Tandem_Repeat 861809 861988 159 + . . scaffold1009 TRF Tandem_Repeat 861809 862051 152 + . . scaffold1009 TRF Tandem_Repeat 862652 862699 96 + . . scaffold1009 TRF Tandem_Repeat 869293 869356 110 + . . scaffold1009 TRF Tandem_Repeat 870005 870166 290 + . . scaffold1009 GLEAN promoter 874529 875528 0.99907 + . ID=CGI_10028768; scaffold1009 GLEAN mRNA 875529 876218 0.99907 + . ID=CGI_10028768; scaffold1009 TRF Tandem_Repeat 888903 888984 137 + . . scaffold1009 GLEAN promoter 895702 896701 0.549248 + . ID=CGI_10028769; scaffold1009 GLEAN mRNA 896702 921934 0.549248 + . ID=CGI_10028769; scaffold1009 TRF Tandem_Repeat 906752 906795 88 + . . scaffold1009 TRF Tandem_Repeat 908768 908822 110 + . . scaffold1009 TRF Tandem_Repeat 911148 911266 150 + . . scaffold1009 TRF Tandem_Repeat 912994 913111 130 + . . scaffold1009 TRF Tandem_Repeat 916740 917089 399 + . . scaffold1009 TRF Tandem_Repeat 917758 917814 98 + . . scaffold1009 TRF Tandem_Repeat 919264 920427 1409 + . . scaffold1009 TRF Tandem_Repeat 933437 933551 74 + . . scaffold1009 TRF Tandem_Repeat 936050 936089 80 + . . scaffold1009 GLEAN promoter 953916 954915 1 + . ID=CGI_10028770; scaffold1009 GLEAN mRNA 954916 961864 1 + . ID=CGI_10028770; scaffold1009 GLEAN promoter 963342 964341 1 + . ID=CGI_10028771; scaffold1009 GLEAN mRNA 964342 973416 1 + . ID=CGI_10028771; scaffold1009 TRF Tandem_Repeat 967429 967474 92 + . . scaffold1009 TRF Tandem_Repeat 967863 968230 255 + . . scaffold1009 TRF Tandem_Repeat 970410 972401 1872 + . . scaffold1009 TRF Tandem_Repeat 970412 971993 1224 + . . scaffold1009 TRF Tandem_Repeat 973235 973277 86 + . . scaffold1009 TRF Tandem_Repeat 974365 976022 2050 + . . scaffold1009 TRF Tandem_Repeat 974676 974890 65 + . . scaffold1009 TRF Tandem_Repeat 975248 975348 51 + . . scaffold1009 TRF Tandem_Repeat 975434 975576 64 + . . scaffold1009 TRF Tandem_Repeat 975818 975954 59 + . . scaffold1009 GLEAN mRNA 978438 985868 0.923138 - . ID=CGI_10028772; scaffold1009 TRF Tandem_Repeat 979765 979897 97 + . . scaffold1009 GLEAN promoter 985869 986868 0.923138 - . ID=CGI_10028772; scaffold1009 GLEAN mRNA 986208 986459 0.997777 - . ID=CGI_10028773; scaffold1009 GLEAN promoter 986460 987459 0.997777 - . ID=CGI_10028773; scaffold1009 GLEAN promoter 996098 997097 0.824618 + . ID=CGI_10028774; scaffold1009 GLEAN mRNA 997098 1006550 0.824618 + . ID=CGI_10028774; scaffold1009 GLEAN promoter 1005656 1006655 1 + . ID=CGI_10028775; scaffold1009 GLEAN mRNA 1006656 1020483 1 + . ID=CGI_10028775; scaffold1009 GLEAN mRNA 1009389 1017383 0.964249 - . ID=CGI_10028776; scaffold1009 TRF Tandem_Repeat 1014360 1015232 604 + . . scaffold1009 TRF Tandem_Repeat 1014367 1015204 487 + . . scaffold1009 TRF Tandem_Repeat 1014749 1014819 52 + . . scaffold1009 GLEAN promoter 1017384 1018383 0.964249 - . ID=CGI_10028776; scaffold1009 GLEAN promoter 1025868 1026867 0.83377 + . ID=CGI_10028777; scaffold1009 GLEAN mRNA 1026868 1046467 0.83377 + . ID=CGI_10028777; scaffold1009 TRF Tandem_Repeat 1034388 1034452 130 + . . scaffold1009 TRF Tandem_Repeat 1039630 1039720 146 + . . scaffold1009 TRF Tandem_Repeat 1040250 1040353 120 + . . scaffold1009 TRF Tandem_Repeat 1041209 1041407 86 + . . scaffold1009 WUBlastX LINE_RTE-X 1048969 1049109 72 - . . scaffold1009 GLEAN mRNA 1051635 1061740 0.999064 - . ID=CGI_10028778; scaffold1009 TRF Tandem_Repeat 1056941 1056976 72 + . . scaffold1009 GLEAN promoter 1061741 1062740 0.999064 - . ID=CGI_10028778; scaffold1009 GLEAN mRNA 1065062 1078817 0.544784 - . ID=CGI_10028779; scaffold1009 TRF Tandem_Repeat 1071829 1072313 424 + . . scaffold1009 TRF Tandem_Repeat 1074260 1074309 100 + . . scaffold1009 TRF Tandem_Repeat 1076885 1077938 988 + . . scaffold1009 TRF Tandem_Repeat 1076896 1077938 982 + . . scaffold1009 GLEAN promoter 1078818 1079817 0.544784 - . ID=CGI_10028779; scaffold1009 GLEAN mRNA 1084790 1098997 0.999884 - . ID=CGI_10028780; scaffold1009 TRF Tandem_Repeat 1085983 1086871 1141 + . . scaffold1009 GLEAN promoter 1098998 1099997 0.999884 - . ID=CGI_10028780; scaffold1009 GLEAN mRNA 1100357 1106858 1 - . ID=CGI_10028781; scaffold1009 GLEAN promoter 1106859 1107858 1 - . ID=CGI_10028781; scaffold1009 TRF Tandem_Repeat 1109276 1109328 70 + . . scaffold1009 TRF Tandem_Repeat 1109276 1109331 76 + . . scaffold1009 TRF Tandem_Repeat 1109289 1109331 59 + . . scaffold1009 GLEAN promoter 1110533 1111532 0.999999 + . ID=CGI_10028782; scaffold1009 GLEAN mRNA 1111533 1116553 0.999999 + . ID=CGI_10028782; scaffold1009 GLEAN mRNA 1116905 1121991 0.557436 - . ID=CGI_10028783; scaffold1009 GLEAN promoter 1121992 1122991 0.557436 - . ID=CGI_10028783; scaffold1009 GLEAN promoter 1129354 1130353 1 + . ID=CGI_10028784; scaffold1009 TRF Tandem_Repeat 1130204 1130242 69 + . . scaffold1009 GLEAN mRNA 1130354 1133148 1 + . ID=CGI_10028784; scaffold1009 GLEAN promoter 1132198 1133197 0.98363 + . ID=CGI_10028785; scaffold1009 GLEAN mRNA 1133198 1149279 0.98363 + . ID=CGI_10028785; scaffold1009 GLEAN mRNA 1140586 1154144 0.999289 - . ID=CGI_10028786; scaffold1009 TRF Tandem_Repeat 1148292 1148816 658 + . . scaffold1009 GLEAN promoter 1154145 1155144 0.999289 - . ID=CGI_10028786; scaffold1009 TRF Tandem_Repeat 1160761 1160792 64 + . . scaffold1009 TRF Tandem_Repeat 1160792 1160840 98 + . . scaffold1009 TRF Tandem_Repeat 1161598 1161637 55 + . . scaffold1009 TRF Tandem_Repeat 1164701 1164955 321 + . . scaffold1009 TRF Tandem_Repeat 1164954 1165141 232 + . . scaffold1009 TRF Tandem_Repeat 1164954 1165143 150 + . . scaffold1009 TRF Tandem_Repeat 1165228 1165314 113 + . . scaffold1009 GLEAN promoter 1172609 1173608 0.998821 + . ID=CGI_10028787; scaffold1009 GLEAN mRNA 1173609 1180126 0.998821 + . ID=CGI_10028787; scaffold1009 TRF Tandem_Repeat 1179808 1179872 121 + . . scaffold1009 TRF Tandem_Repeat 1180313 1180371 118 + . . scaffold1009 WUBlastX LINE_L1-Tx1 1180587 1180994 28 - . . scaffold1009 WUBlastX LINE_L1-Tx1 1180656 1181108 90 - . . scaffold1009 WUBlastX LINE_L1 1183002 1183175 56 - . . scaffold1009 WUBlastX LINE_L1-Tx1 1183026 1183172 65 - . . scaffold1009 TRF Tandem_Repeat 1183898 1183955 116 + . . scaffold1009 WUBlastX DNA_Crypton 1185994 1186233 26 + . . scaffold1009 WUBlastX LINE_Penelope 1186850 1187245 55 - . . scaffold1009 WUBlastX LINE_Penelope 1186928 1187248 99 - . . scaffold1009 WUBlastX LINE_Penelope 1187603 1187908 44 - . . scaffold1009 TRF Tandem_Repeat 1193941 1193981 82 + . . scaffold1009 GLEAN promoter 1196147 1197146 0.350484 + . ID=CGI_10028788; scaffold1009 GLEAN mRNA 1197147 1238817 0.350484 + . ID=CGI_10028788; scaffold1009 TRF Tandem_Repeat 1208490 1209292 635 + . . scaffold1009 WUBlastX LTR_Pao 1212325 1213359 106 - . . scaffold1009 TRF Tandem_Repeat 1219322 1219367 76 + . . scaffold1009 WUBlastX LINE_RTE-X 1225837 1226280 93 - . . scaffold1009 WUBlastX LINE_RTE-X 1225840 1226142 111 - . . scaffold1009 WUBlastX LINE_RTE-X 1225840 1226364 29 - . . scaffold1009 GLEAN mRNA 1227247 1228509 0.999816 - . ID=CGI_10028789; scaffold1009 GLEAN promoter 1228510 1229509 0.999816 - . ID=CGI_10028789; scaffold1009 GLEAN mRNA 1240397 1257712 0.613222 - . ID=CGI_10028790; scaffold1009 TRF Tandem_Repeat 1248369 1248432 82 + . . scaffold1009 TRF Tandem_Repeat 1248374 1248435 79 + . . scaffold1009 GLEAN promoter 1257713 1258712 0.613222 - . ID=CGI_10028790; scaffold1009 GLEAN mRNA 1261399 1262703 0.836252 - . ID=CGI_10028791; scaffold1009 GLEAN promoter 1262704 1263703 0.836252 - . ID=CGI_10028791; scaffold1009 GLEAN mRNA 1266990 1268708 0.528485 - . ID=CGI_10028792; scaffold1009 WUBlastX DNA_hAT-hATw 1267554 1268387 21 - . . scaffold1009 GLEAN promoter 1268709 1269708 0.528485 - . ID=CGI_10028792; scaffold1009 TRF Tandem_Repeat 1270030 1271055 1321 + . . scaffold1009 TRF Tandem_Repeat 1272444 1273277 915 + . . scaffold1009 WUBlastX DNA_Harbinger 1276363 1276533 48 + . . scaffold1009 WUBlastX DNA_Harbinger 1276375 1276599 48 + . . scaffold1009 TRF Tandem_Repeat 1276792 1276823 64 + . . scaffold1009 WUBlastX LINE_Penelope 1288665 1289060 123 - . . scaffold1009 WUBlastX LINE_Penelope 1288770 1289060 163 - . . scaffold1009 WUBlastX LINE_Penelope 1289126 1289215 26 - . . scaffold1009 WUBlastX LINE_Penelope 1289236 1289406 59 - . . scaffold1009 WUBlastX DNA_Harbinger 1289772 1290779 525 + . . scaffold1009 WUBlastX LINE_RTE-X 1294993 1295130 36 - . . scaffold1009 WUBlastX LINE_RTE-BovB 1295684 1295806 67 - . . scaffold1009 WUBlastX LINE_RTE-BovB 1295722 1296315 193 - . . scaffold1009 WUBlastX LINE_RTE-BovB 1295812 1296285 253 - . . scaffold1009 TRF Tandem_Repeat 1298797 1298821 50 + . . scaffold1009 TRF Tandem_Repeat 1298856 1298891 56 + . . scaffold1009 WUBlastX LTR_Gypsy 1302896 1303453 127 + . . scaffold1009 WUBlastX LTR_Gypsy 1303514 1304320 141 + . . scaffold1009 WUBlastX LTR_Gypsy-Cigr 1303682 1305064 620 + . . scaffold1009 WUBlastX LTR_Gypsy 1305049 1305660 523 + . . scaffold1009 WUBlastX LTR_Gypsy 1305097 1305786 210 + . . scaffold1009 WUBlastX LTR_Gypsy-Cigr 1305680 1305868 91 + . . scaffold1009 WUBlastX LTR_Gypsy-Cigr 1305846 1306394 154 + . . scaffold1009 WUBlastX LTR_Gypsy 1305948 1306394 180 + . . scaffold1009 WUBlastX LTR_Gypsy 1306379 1307359 348 + . . scaffold1009 WUBlastX LTR_Gypsy-Cigr 1306394 1307212 527 + . . scaffold1009 WUBlastX LINE_Proto2 1313588 1313671 40 + . . scaffold1009 WUBlastX LINE_Proto2 1313686 1313829 23 + . . scaffold1009 TRF Tandem_Repeat 1317489 1317533 53 + . . scaffold1009 WUBlastX LTR_Gypsy 1317713 1318270 89 - . . scaffold1009 WUBlastX LTR_Gypsy 1317809 1318285 115 - . . scaffold1009 WUBlastX LTR_Gypsy 1317887 1318285 132 - . . scaffold1009 TRF Tandem_Repeat 1318307 1318405 99 + . . scaffold1009 GLEAN mRNA 1318919 1320292 0.648334 - . ID=CGI_10028793; scaffold1009 GLEAN promoter 1320293 1321292 0.648334 - . ID=CGI_10028793; scaffold1009 TRF Tandem_Repeat 1321531 1321664 110 + . . scaffold1009 WUBlastX LTR_Gypsy 1321685 1323688 1706 - . . scaffold1009 WUBlastX LTR_Gypsy 1324100 1324261 27 - . . scaffold1009 WUBlastX LTR_Gypsy 1324145 1325071 331 - . . scaffold1009 WUBlastX LTR_Gypsy 1335840 1336007 26 - . . scaffold1009 WUBlastX LTR_Gypsy 1335934 1336932 318 - . . scaffold1009 WUBlastX LINE_L1-Tx1 1340984 1341265 40 + . . scaffold1009 WUBlastX LINE_L1 1341065 1341265 67 + . . scaffold1009 TRF Tandem_Repeat 1341583 1341616 68 + . . scaffold1009 WUBlastX LINE_L1-Tx1 1341687 1341872 24 + . . scaffold1009 WUBlastX LTR_Ngaro 1342660 1343004 30 + . . scaffold1009 WUBlastX LTR_Ngaro 1342762 1343004 47 + . . scaffold1009 WUBlastX LTR_Ngaro 1343007 1343219 104 + . . scaffold1009 WUBlastX LTR_Ngaro 1343007 1343282 75 + . . scaffold1009 WUBlastX LTR_Ngaro 1343461 1344033 187 + . . scaffold1009 WUBlastX LTR_Ngaro 1344036 1344104 28 + . . scaffold1009 WUBlastX LTR_Ngaro 1344113 1344715 295 + . . scaffold1009 WUBlastX LTR_Ngaro 1344712 1344840 21 + . . scaffold1009 WUBlastX LTR_Ngaro 1344730 1344807 37 + . . scaffold1009 WUBlastX LTR_Ngaro 1344939 1345277 54 + . . scaffold1009 WUBlastX LTR_Ngaro 1344996 1345316 76 + . . scaffold1009 WUBlastX LTR_Ngaro 1345023 1345289 84 + . . scaffold1009 WUBlastX LTR_Ngaro 1346194 1346238 20 + . . scaffold1009 WUBlastX LTR_Ngaro 1346194 1346223 22 + . . scaffold1009 WUBlastX LTR_Ngaro 1346295 1346606 91 + . . scaffold1009 WUBlastX LTR_Ngaro 1346582 1346668 31 + . . scaffold1009 GLEAN promoter 1367869 1368868 0.436262 + . ID=CGI_10028795; scaffold1009 GLEAN mRNA 1368869 1381733 0.436262 + . ID=CGI_10028795; scaffold1009 GLEAN promoter 1384958 1385957 0.363333 + . ID=CGI_10028796; scaffold1009 GLEAN mRNA 1385958 1409839 0.363333 + . ID=CGI_10028796; scaffold1009 WUBlastX LINE_RTE-BovB 1403603 1404013 43 - . . scaffold1009 WUBlastX LINE_RTE-RTE 1403774 1403941 49 - . . scaffold1009 WUBlastX LINE_RTE-BovB 1404015 1404338 121 - . . scaffold1009 GLEAN mRNA 1412836 1419014 0.999944 - . ID=CGI_10028797; scaffold1009 TRF Tandem_Repeat 1418055 1418081 54 + . . scaffold1009 GLEAN promoter 1419015 1420014 0.999944 - . ID=CGI_10028797; scaffold1009 GLEAN mRNA 1442145 1455539 1 - . ID=CGI_10028799; scaffold1009 GLEAN promoter 1455540 1456539 1 - . ID=CGI_10028799; scaffold1009 GLEAN promoter 1458242 1459241 0.999351 + . ID=CGI_10028800; scaffold1009 GLEAN mRNA 1459242 1473663 0.999351 + . ID=CGI_10028800; scaffold1009 GLEAN mRNA 1475354 1478626 1 - . ID=CGI_10028801; scaffold1009 GLEAN promoter 1478627 1479626 1 - . ID=CGI_10028801; scaffold1009 TRF Tandem_Repeat 1479724 1479905 301 + . . scaffold1009 GLEAN promoter 1481224 1482223 1 + . ID=CGI_10028802; scaffold1009 GLEAN mRNA 1482224 1483547 1 + . ID=CGI_10028802; scaffold1009 GLEAN mRNA 1488006 1488458 1 - . ID=CGI_10028803; scaffold1009 GLEAN promoter 1488459 1489458 1 - . ID=CGI_10028803; scaffold1009 GLEAN mRNA 1488907 1500228 1 - . ID=CGI_10028804; scaffold1009 GLEAN promoter 1500229 1501228 1 - . ID=CGI_10028804; scaffold1009 GLEAN mRNA 1503996 1507461 0.999958 - . ID=CGI_10028805; scaffold1009 GLEAN promoter 1507462 1508461 0.999958 - . ID=CGI_10028805; scaffold1009 GLEAN mRNA 1518253 1536389 0.542618 - . ID=CGI_10028806; scaffold1009 TRF Tandem_Repeat 1524365 1524423 118 + . . scaffold1009 TRF Tandem_Repeat 1534525 1534573 98 + . . scaffold1009 GLEAN promoter 1536390 1537389 0.542618 - . ID=CGI_10028806; scaffold1009 GLEAN mRNA 1537733 1541266 1 - . ID=CGI_10028807; scaffold1009 TRF Tandem_Repeat 1540216 1540255 62 + . . scaffold1009 GLEAN promoter 1541267 1542266 1 - . ID=CGI_10028807; scaffold1009 GLEAN promoter 1542602 1543601 0.982585 + . ID=CGI_10028808; scaffold1009 GLEAN mRNA 1543602 1555868 0.982585 + . ID=CGI_10028808; scaffold1009 TRF Tandem_Repeat 1549651 1549692 84 + . . scaffold1009 TRF Tandem_Repeat 1553133 1553266 171 + . . scaffold1009 TRF Tandem_Repeat 1553343 1553502 182 + . . scaffold1009 TRF Tandem_Repeat 1553709 1553802 98 + . . scaffold1009 GLEAN promoter 1556767 1557766 0.989214 + . ID=CGI_10028809; scaffold1009 GLEAN mRNA 1557767 1561887 0.989214 + . ID=CGI_10028809; scaffold1009 WUBlastX LINE_RTE-X 1568265 1568558 61 - . . scaffold1009 WUBlastX LINE_RTE-X 1568355 1568561 62 - . . scaffold1009 WUBlastX LINE_RTE-X 1568391 1568558 83 - . . scaffold1009 WUBlastX LINE_L2 1568802 1570049 609 - . . scaffold1009 WUBlastX LINE_L2 1569489 1570151 172 - . . scaffold1009 WUBlastX LINE_RTE-X 1570516 1570836 34 - . . scaffold1009 WUBlastX LINE_RTE-X 1570633 1570812 39 - . . scaffold1009 GLEAN mRNA 1572830 1579320 1 - . ID=CGI_10028810; scaffold1009 TRF Tandem_Repeat 1575911 1575959 98 + . . scaffold1009 GLEAN promoter 1579321 1580320 1 - . ID=CGI_10028810; scaffold1009 GLEAN mRNA 1584896 1595994 0.999619 - . ID=CGI_10028811; scaffold1009 TRF Tandem_Repeat 1589132 1589162 62 + . . scaffold1009 GLEAN promoter 1595995 1596994 0.999619 - . ID=CGI_10028811; scaffold1009 TRF Tandem_Repeat 1596288 1596321 68 + . . scaffold1009 GLEAN mRNA 1598408 1613661 0.658504 - . ID=CGI_10028812; scaffold1009 GLEAN promoter 1601177 1602176 0.99628 + . ID=CGI_10028813; scaffold1009 GLEAN mRNA 1602177 1610940 0.99628 + . ID=CGI_10028813; scaffold1009 TRF Tandem_Repeat 1609731 1609998 279 + . . scaffold1009 TRF Tandem_Repeat 1609733 1609999 154 + . . scaffold1009 GLEAN promoter 1613662 1614661 0.658504 - . ID=CGI_10028812; scaffold1009 GLEAN promoter 1616421 1617420 0.930867 + . ID=CGI_10028814; scaffold1009 TRF Tandem_Repeat 1616929 1616974 92 + . . scaffold1009 GLEAN mRNA 1617421 1637375 0.930867 + . ID=CGI_10028814; scaffold1009 TRF Tandem_Repeat 1621718 1621794 100 + . . scaffold1009 TRF Tandem_Repeat 1621721 1621794 103 + . . scaffold1009 TRF Tandem_Repeat 1621721 1621794 112 + . . scaffold1009 TRF Tandem_Repeat 1633345 1633389 90 + . . scaffold1009 TRF Tandem_Repeat 1638796 1639513 886 + . . scaffold1009 TRF Tandem_Repeat 1651026 1651051 52 + . . scaffold1009 GLEAN promoter 1656119 1657118 0.999706 + . ID=CGI_10028815; scaffold1009 GLEAN mRNA 1657119 1670663 0.999706 + . ID=CGI_10028815; scaffold1009 TRF Tandem_Repeat 1666878 1667305 608 + . . scaffold1009 TRF Tandem_Repeat 1667523 1667613 128 + . . scaffold1009 GLEAN mRNA 1679258 1680424 0.98039 - . ID=CGI_10028816; scaffold1009 GLEAN promoter 1680425 1681424 0.98039 - . ID=CGI_10028816; scaffold1009 GLEAN mRNA 1681573 1686313 1 - . ID=CGI_10028817; scaffold1009 GLEAN promoter 1686314 1687313 1 - . ID=CGI_10028817; scaffold1009 TRF Tandem_Repeat 1687680 1687723 88 + . . scaffold1009 TRF Tandem_Repeat 1690187 1690254 118 + . . scaffold1009 TRF Tandem_Repeat 1720549 1720888 366 + . . scaffold1009 GLEAN mRNA 1721971 1735405 0.999316 - . ID=CGI_10028818; scaffold1009 GLEAN promoter 1725824 1726823 1 + . ID=CGI_10028819; scaffold1009 GLEAN mRNA 1726824 1729376 1 + . ID=CGI_10028819; scaffold1009 GLEAN promoter 1735406 1736405 0.999316 - . ID=CGI_10028818; scaffold1009 GLEAN promoter 1739324 1740323 0.999999 + . ID=CGI_10028820; scaffold1009 GLEAN mRNA 1740324 1744917 0.999999 + . ID=CGI_10028820; scaffold1009 GLEAN mRNA 1747521 1762599 0.941658 - . ID=CGI_10028821; scaffold1009 TRF Tandem_Repeat 1761032 1761088 114 + . . scaffold1009 GLEAN promoter 1762600 1763599 0.941658 - . ID=CGI_10028821; scaffold1009 TRF Tandem_Repeat 1774895 1775026 264 + . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790131 1790250 23 + . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790325 1790603 20 + . . scaffold1009 WUBlastX DNA_TcMar-Fot1 1790519 1790914 46 + . . scaffold1009 WUBlastX DNA_TcMar-Fot1 1790600 1790905 72 + . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790793 1791194 74 + . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790793 1791338 65 + . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790868 1791179 78 + . . scaffold1009 WUBlastX DNA_TcMar-Tc2 1790925 1791212 86 + . . scaffold1009 TRF Tandem_Repeat 1814114 1814147 68 + . . scaffold1009 TRF Tandem_Repeat 1826042 1826091 84 + . . scaffold1009 TRF Tandem_Repeat 1826473 1826516 88 + . . scaffold1009 TRF Tandem_Repeat 1827964 1828017 99 + . . scaffold1009 WUBlastX LINE_L1-Tx1 1831737 1831871 27 - . . scaffold1009 WUBlastX LINE_L1-Tx1 1832023 1832184 74 - . . scaffold1009 WUBlastX LINE_L1 1832157 1833128 485 - . . scaffold1009 WUBlastX LINE_L1-Tx1 1833110 1833313 133 - . . scaffold1009 WUBlastX LINE_L1 1833212 1833337 50 - . . scaffold1009 WUBlastX LINE_L1-Tx1 1833337 1834287 130 - . . scaffold1009 WUBlastX LINE_L1 1834239 1834370 28 - . . scaffold1009 WUBlastX LINE_L1 1834311 1834403 25 - . . scaffold1009 WUBlastX LINE_L2 1834601 1834651 24 - . . scaffold1009 TRF Tandem_Repeat 1853270 1853294 50 + . . scaffold1009 WUBlastX DNA_TcMar-Tc1 1855544 1856293 236 + . . scaffold1009 WUBlastX DNA_TcMar-Tc1 1855709 1856293 252 + . . scaffold101 GLEAN mRNA 693 5386 0.999676 - . ID=CGI_10021630; scaffold101 GLEAN promoter 5387 6386 0.999676 - . ID=CGI_10021630; scaffold101 TRF Tandem_Repeat 5767 5833 80 + . . scaffold101 GLEAN mRNA 8673 17605 0.999042 - . ID=CGI_10021631; scaffold101 TRF Tandem_Repeat 12976 13141 159 + . . scaffold101 GLEAN promoter 17606 18605 0.999042 - . ID=CGI_10021631; scaffold101 TRF Tandem_Repeat 24324 24357 68 + . . scaffold101 WUBlastX DNA_Harbinger 32504 33235 286 + . . scaffold101 GLEAN mRNA 33597 35334 0.999952 - . ID=CGI_10021632; scaffold101 WUBlastX DNA_Sola 33666 34166 41 - . . scaffold101 GLEAN promoter 35335 36334 0.999952 - . ID=CGI_10021632; scaffold101 WUBlastX DNA_hAT-Ac 37073 37216 62 + . . scaffold101 TRF Tandem_Repeat 39350 39548 193 + . . scaffold101 TRF Tandem_Repeat 42338 42376 78 + . . scaffold101 TRF Tandem_Repeat 52574 52708 108 + . . scaffold101 TRF Tandem_Repeat 54003 54065 65 + . . scaffold101 TRF Tandem_Repeat 54003 54065 76 + . . scaffold101 TRF Tandem_Repeat 66616 66677 92 + . . scaffold101 TRF Tandem_Repeat 68278 68463 104 + . . scaffold101 TRF Tandem_Repeat 68420 68499 74 + . . scaffold101 TRF Tandem_Repeat 70645 70694 100 + . . scaffold101 GLEAN promoter 79958 80957 1 + . ID=CGI_10021633; scaffold101 GLEAN mRNA 80958 90947 1 + . ID=CGI_10021633; scaffold101 TRF Tandem_Repeat 101042 101106 57 + . . scaffold101 TRF Tandem_Repeat 112240 112323 70 + . . scaffold101 TRF Tandem_Repeat 112254 112323 60 + . . scaffold101 GLEAN promoter 119796 120795 0.979854 + . ID=CGI_10021634; scaffold101 TRF Tandem_Repeat 120022 120117 90 + . . scaffold101 GLEAN mRNA 120796 130607 0.979854 + . ID=CGI_10021634; scaffold101 TRF Tandem_Repeat 122605 122631 54 + . . scaffold101 GLEAN promoter 134683 135682 0.934661 + . ID=CGI_10021636; scaffold101 GLEAN mRNA 135108 148241 1 - . ID=CGI_10021635; scaffold101 GLEAN mRNA 135683 153194 0.934661 + . ID=CGI_10021636; scaffold101 GLEAN promoter 148242 149241 1 - . ID=CGI_10021635; scaffold101 TRF Tandem_Repeat 150143 151467 1591 + . . scaffold101 GLEAN mRNA 154818 159969 0.716445 - . ID=CGI_10021637; scaffold101 TRF Tandem_Repeat 157185 157229 90 + . . scaffold101 GLEAN promoter 159970 160969 0.716445 - . ID=CGI_10021637; scaffold101 GLEAN mRNA 165559 182017 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 170381 170434 58 + . . scaffold101 TRF Tandem_Repeat 175102 176801 2517 + . . scaffold101 TRF Tandem_Repeat 175102 176801 2551 + . . scaffold101 TRF Tandem_Repeat 176966 177012 51 + . . scaffold101 TRF Tandem_Repeat 177361 177420 66 + . . scaffold101 TRF Tandem_Repeat 177362 177400 60 + . . scaffold101 TRF Tandem_Repeat 177370 177420 75 + . . scaffold101 TRF Tandem_Repeat 177386 177424 69 + . . scaffold101 GLEAN promoter 182018 183017 0.813712 - . ID=CGI_10021638; scaffold101 TRF Tandem_Repeat 203333 204046 981 + . . scaffold101 TRF Tandem_Repeat 205492 205541 75 + . . scaffold101 GLEAN promoter 205689 206688 0.77748 + . ID=CGI_10021639; scaffold101 GLEAN mRNA 206689 211182 0.77748 + . ID=CGI_10021639; scaffold101 TRF Tandem_Repeat 213035 213073 78 + . . scaffold101 GLEAN mRNA 225746 246261 0.999949 - . ID=CGI_10021640; scaffold101 GLEAN promoter 246262 247261 0.999949 - . ID=CGI_10021640; scaffold101 GLEAN mRNA 248040 248960 0.6496 - . ID=CGI_10021641; scaffold101 GLEAN promoter 248961 249960 0.6496 - . ID=CGI_10021641; scaffold101 WUBlastX LINE_RTE-X 254335 254631 41 + . . scaffold101 TRF Tandem_Repeat 254699 254738 80 + . . scaffold101 GLEAN promoter 255892 256891 0.999068 + . ID=CGI_10021642; scaffold101 GLEAN mRNA 256892 257254 0.999068 + . ID=CGI_10021642; scaffold101 GLEAN promoter 260175 261174 1 + . ID=CGI_10021643; scaffold101 GLEAN mRNA 261175 265576 1 + . ID=CGI_10021643; scaffold101 TRF Tandem_Repeat 261653 261692 80 + . . scaffold101 TRF Tandem_Repeat 267551 267593 86 + . . scaffold101 GLEAN promoter 268476 269475 0.957882 + . ID=CGI_10021644; scaffold101 GLEAN mRNA 269476 308543 0.957882 + . ID=CGI_10021644; scaffold101 TRF Tandem_Repeat 283773 283858 109 + . . scaffold101 TRF Tandem_Repeat 290891 290935 90 + . . scaffold101 GLEAN promoter 307692 308691 0.999351 + . ID=CGI_10021645; scaffold101 GLEAN mRNA 308692 328638 0.999351 + . ID=CGI_10021645; scaffold101 GLEAN mRNA 312467 328385 0.843729 - . ID=CGI_10021646; scaffold101 WUBlastX LINE_RTE-X 312712 312933 69 + . . scaffold101 TRF Tandem_Repeat 317105 317138 59 + . . scaffold101 TRF Tandem_Repeat 319962 319988 54 + . . scaffold101 WUBlastX DNA_MuDR 321873 322181 97 + . . scaffold101 WUBlastX DNA_MuDR 322332 322724 90 + . . scaffold101 GLEAN promoter 328386 329385 0.843729 - . ID=CGI_10021646; scaffold101 WUBlastX LINE_RTE-X 328629 328691 25 + . . scaffold101 WUBlastX LINE_RTE-X 328711 328923 67 + . . scaffold101 WUBlastX LINE_RTE-X 328923 329060 63 + . . scaffold101 WUBlastX LINE_RTE-X 328959 329108 38 + . . scaffold101 GLEAN promoter 329287 330286 0.999675 + . ID=CGI_10021647; scaffold101 GLEAN mRNA 330287 336716 0.999675 + . ID=CGI_10021647; scaffold101 GLEAN promoter 338343 339342 0.558407 + . ID=CGI_10021648; scaffold101 GLEAN mRNA 339343 341539 0.558407 + . ID=CGI_10021648; scaffold101 TRF Tandem_Repeat 345354 345389 63 + . . scaffold101 TRF Tandem_Repeat 345437 345528 150 + . . scaffold101 WUBlastX DNA_TcMar-Marin 346468 346635 80 - . . scaffold101 WUBlastX DNA_TcMar-Marin 346501 346674 54 - . . scaffold101 TRF Tandem_Repeat 346750 346870 102 + . . scaffold101 TRF Tandem_Repeat 346960 347086 121 + . . scaffold101 TRF Tandem_Repeat 348104 348478 210 + . . scaffold101 TRF Tandem_Repeat 348116 348479 220 + . . scaffold101 TRF Tandem_Repeat 348227 348478 176 + . . scaffold101 WUBlastX LINE_CR1 359464 359766 106 + . . scaffold101 WUBlastX LINE_L1-Tx1 359751 360482 52 + . . scaffold101 WUBlastX LINE_L1-Tx1 359769 360098 83 + . . scaffold101 WUBlastX LINE_L1-Tx1 359769 360164 58 + . . scaffold101 WUBlastX LINE_L1-Tx1 360740 360898 82 + . . scaffold101 WUBlastX LINE_RTE-X 363090 363374 68 + . . scaffold101 WUBlastX LINE_RTE-X 363228 363380 81 + . . scaffold101 WUBlastX LINE_RTE-X 363228 363422 77 + . . scaffold101 TRF Tandem_Repeat 363757 363816 102 + . . scaffold101 WUBlastX LINE_L1-Tx1 366380 366718 92 + . . scaffold101 WUBlastX LINE_L1-Tx1 366440 366739 150 + . . scaffold101 WUBlastX LINE_L1 366639 367226 153 + . . scaffold101 WUBlastX LINE_L1-Tx1 366738 370193 1950 + . . scaffold101 GLEAN mRNA 372430 382001 0.551916 - . ID=CGI_10021649; scaffold101 WUBlastX LTR_Gypsy 380463 381101 109 - . . scaffold101 WUBlastX LTR_Gypsy 380508 381383 42 - . . scaffold101 GLEAN promoter 382002 383001 0.551916 - . ID=CGI_10021649; scaffold101 WUBlastX LINE_L1-Tx1 383305 384273 423 + . . scaffold101 WUBlastX LINE_L1-Tx1 385281 385793 34 + . . scaffold101 WUBlastX LINE_L1-Tx1 385338 385754 49 + . . scaffold101 WUBlastX LINE_L1-Tx1 385431 385766 93 + . . scaffold101 WUBlastX LINE_L1 385482 385754 97 + . . scaffold101 TRF Tandem_Repeat 415916 415952 74 + . . scaffold101 GLEAN mRNA 420365 428839 0.593315 - . ID=CGI_10021651; scaffold101 GLEAN promoter 428840 429839 0.593315 - . ID=CGI_10021651; scaffold101 WUBlastX LINE_L1-Tx1 457152 457418 36 + . . scaffold101 TRF Tandem_Repeat 464361 464388 56 + . . scaffold101 TRF Tandem_Repeat 465752 467350 1943 + . . scaffold101 WUBlastX LINE_CR1 467352 467519 49 + . . scaffold101 WUBlastX LINE_L2 467388 467513 54 + . . scaffold101 WUBlastX LINE_CR1-L2 467503 468120 232 + . . scaffold101 WUBlastX LINE_L2 467503 467979 265 + . . scaffold101 TRF Tandem_Repeat 470704 470761 73 + . . scaffold101 TRF Tandem_Repeat 470704 470761 73 + . . scaffold101 TRF Tandem_Repeat 470704 470749 65 + . . scaffold101 WUBlastX LINE_L2 470838 471002 58 + . . scaffold101 TRF Tandem_Repeat 473016 474074 900 + . . scaffold101 WUBlastX DNA_TcMar-Tc1 492502 493002 107 + . . scaffold101 WUBlastX LTR_Ngaro 504856 505146 132 - . . scaffold101 WUBlastX LTR_Ngaro 504856 505356 45 - . . scaffold101 WUBlastX LTR_Ngaro 504865 505245 102 - . . scaffold101 TRF Tandem_Repeat 505709 505750 75 + . . scaffold101 TRF Tandem_Repeat 505937 505978 84 + . . scaffold101 TRF Tandem_Repeat 506371 506431 113 + . . scaffold101 WUBlastX LTR_Gypsy 507460 509205 1064 - . . scaffold101 WUBlastX LTR_Gypsy 509219 509791 280 - . . scaffold101 WUBlastX LTR_Gypsy 509390 509791 323 - . . scaffold101 WUBlastX LTR_Gypsy 509588 509830 90 - . . scaffold101 TRF Tandem_Repeat 521095 521155 59 + . . scaffold101 TRF Tandem_Repeat 521095 521158 69 + . . scaffold101 TRF Tandem_Repeat 521095 521155 86 + . . scaffold101 WUBlastX DNA_TcMar-Tc1 533150 533344 91 - . . scaffold101 WUBlastX DNA_TcMar-Tc1 533343 533864 148 - . . scaffold101 WUBlastX DNA_TcMar-Tc1 533343 534089 147 - . . scaffold101 WUBlastX DNA_TcMar-Tc1 533361 533777 171 - . . scaffold101 TRF Tandem_Repeat 539220 539279 93 + . . scaffold101 TRF Tandem_Repeat 542200 542240 82 + . . scaffold101 WUBlastX DNA_TcMar-Tc1 549713 550735 420 - . . scaffold101 WUBlastX LINE_L1 559008 559214 21 + . . scaffold101 WUBlastX LINE_L1-Tx1 559059 559208 62 + . . scaffold101 WUBlastX LINE_L1 559059 559262 44 + . . scaffold101 WUBlastX LINE_L1-Tx1 559255 559668 53 + . . scaffold101 WUBlastX LINE_L1-Tx1 559306 559650 64 + . . scaffold101 WUBlastX LINE_L1-Tx1 559704 560819 555 + . . scaffold101 WUBlastX LINE_L1 559839 561107 258 + . . scaffold101 WUBlastX LINE_L1-Tx1 561076 561462 210 + . . scaffold101 WUBlastX LINE_L1-Tx1 561079 561540 50 + . . scaffold101 WUBlastX LINE_L1-Tx1 561570 561821 25 + . . scaffold101 TRF Tandem_Repeat 562984 563033 75 + . . scaffold101 TRF Tandem_Repeat 563416 563457 84 + . . scaffold101 TRF Tandem_Repeat 564913 564966 99 + . . scaffold101 TRF Tandem_Repeat 564915 565026 95 + . . scaffold101 WUBlastX LTR_Gypsy 566566 567321 633 - . . scaffold101 WUBlastX LTR_Gypsy 567324 567674 76 - . . scaffold101 WUBlastX LTR_Gypsy 567354 567623 115 - . . scaffold101 WUBlastX LTR_Gypsy 567381 567578 147 - . . scaffold101 WUBlastX LTR_Gypsy 567593 567757 40 - . . scaffold101 WUBlastX LTR_Gypsy 567605 567796 38 - . . scaffold101 WUBlastX LTR_Gypsy 568422 568478 22 - . . scaffold101 WUBlastX LTR_Gypsy 569406 570398 722 - . . scaffold101 WUBlastX LTR_Gypsy 570353 571675 435 - . . scaffold101 WUBlastX LTR_Gypsy 571379 571786 58 - . . scaffold101 WUBlastX LTR_Gypsy 571902 571946 20 - . . scaffold101 WUBlastX LTR_Gypsy-Cigr 572236 572460 44 - . . scaffold101 WUBlastX LTR_Gypsy 572454 572702 47 - . . scaffold101 WUBlastX LTR_Gypsy 590943 591314 29 - . . scaffold101 WUBlastX LTR_Gypsy 591242 591565 94 - . . scaffold101 WUBlastX LTR_Gypsy 591377 591565 151 - . . scaffold101 WUBlastX LTR_Gypsy 591377 591652 100 - . . scaffold101 TRF Tandem_Repeat 596087 596153 134 + . . scaffold101 TRF Tandem_Repeat 599531 599564 50 + . . scaffold101 GLEAN mRNA 603146 610994 0.999615 - . ID=CGI_10021652; scaffold101 GLEAN promoter 610995 611994 0.999615 - . ID=CGI_10021652; scaffold101 WUBlastX LINE_L2 614767 614892 20 - . . scaffold101 WUBlastX LINE_L2 614791 614886 22 - . . scaffold101 WUBlastX LINE_CR1 614806 614898 35 - . . scaffold101 WUBlastX LINE_L2 614818 614919 21 - . . scaffold101 WUBlastX LINE_CR1 614970 615494 39 - . . scaffold101 WUBlastX LINE_L2 615096 615731 99 - . . scaffold101 WUBlastX LINE_L2 615153 615671 134 - . . scaffold101 WUBlastX LINE_L2 615198 615506 157 - . . scaffold101 WUBlastX LINE_L2 615204 615635 153 - . . scaffold101 WUBlastX LINE_L2 615509 616165 21 - . . scaffold101 WUBlastX LINE_L2 615704 615907 90 - . . scaffold101 WUBlastX LINE_L2 615725 615943 56 - . . scaffold101 WUBlastX LINE_L2 616152 616268 21 - . . scaffold101 TRF Tandem_Repeat 623249 623315 71 + . . scaffold101 TRF Tandem_Repeat 624437 624487 95 + . . scaffold101 TRF Tandem_Repeat 624487 624521 70 + . . scaffold101 WUBlastX LINE_RTE-X 629486 629833 122 - . . scaffold101 WUBlastX LINE_RTE-X 629967 630230 79 - . . scaffold101 WUBlastX LINE_RTE-X 630078 630335 60 - . . scaffold101 WUBlastX LINE_RTE-X 630400 630840 125 - . . scaffold101 WUBlastX LINE_RTE-X 630400 631047 71 - . . scaffold101 WUBlastX LINE_CR1-L2 631358 631438 23 - . . scaffold101 WUBlastX LINE_RTE-BovB 631561 631707 31 - . . scaffold101 WUBlastX LINE_CR1 632017 632610 96 - . . scaffold101 WUBlastX LINE_RTE-X 632110 632595 303 - . . scaffold101 WUBlastX LINE_RTE-BovB 632592 632927 24 - . . scaffold101 WUBlastX LINE_L1 632601 632813 51 - . . scaffold101 WUBlastX LINE_RTE-X 632628 632771 66 - . . scaffold101 WUBlastX LINE_L1 632655 632795 61 - . . scaffold101 WUBlastX LINE_RTE-BovB 632661 632858 32 - . . scaffold101 WUBlastX LINE_LOA 632909 632995 20 - . . scaffold101 TRF Tandem_Repeat 645339 645382 88 + . . scaffold101 WUBlastX LINE_Penelope 645741 647189 421 - . . scaffold101 TRF Tandem_Repeat 647192 647240 98 + . . scaffold101 TRF Tandem_Repeat 647238 647271 68 + . . scaffold101 TRF Tandem_Repeat 647737 647803 80 + . . scaffold101 TRF Tandem_Repeat 648859 648889 62 + . . scaffold101 TRF Tandem_Repeat 669104 669133 60 + . . scaffold101 WUBlastX LINE_L1 671115 671198 25 + . . scaffold101 WUBlastX LINE_L1-Tx1 671309 671947 92 + . . scaffold101 WUBlastX LINE_L1 671435 672244 54 + . . scaffold101 WUBlastX LINE_L1-Tx1 671444 672070 260 + . . scaffold101 WUBlastX LINE_L1-Tx1 673072 674064 190 + . . scaffold101 TRF Tandem_Repeat 674841 674894 99 + . . scaffold101 TRF Tandem_Repeat 674960 675011 50 + . . scaffold101 TRF Tandem_Repeat 675022 675084 99 + . . scaffold101 TRF Tandem_Repeat 676166 676219 99 + . . scaffold101 WUBlastX DNA_TcMar-Tc1 676377 676628 23 - . . scaffold101 GLEAN mRNA 676539 710927 0.888019 - . ID=CGI_10021653; scaffold101 WUBlastX DNA_MuDR 677102 677353 31 + . . scaffold101 WUBlastX DNA_MuDR 677388 677987 191 + . . scaffold101 WUBlastX DNA_MuDR 677993 678166 21 + . . scaffold101 WUBlastX DNA_MuDR 678020 678220 68 + . . scaffold101 TRF Tandem_Repeat 679262 679315 90 + . . scaffold101 TRF Tandem_Repeat 694897 694934 76 + . . scaffold101 GLEAN promoter 710928 711927 0.888019 - . ID=CGI_10021653; scaffold1010 TRF Tandem_Repeat 4531 4689 61 + . . scaffold1010 TRF Tandem_Repeat 4535 4669 52 + . . scaffold1010 TRF Tandem_Repeat 4667 4691 50 + . . scaffold1010 GLEAN promoter 4868 5867 1 + . ID=CGI_10002871; scaffold1010 GLEAN mRNA 5868 6922 1 + . ID=CGI_10002871; scaffold1010 GLEAN promoter 6971 7970 0.695899 + . ID=CGI_10002872; scaffold1010 GLEAN mRNA 7971 13280 0.695899 + . ID=CGI_10002872; scaffold1010 TRF Tandem_Repeat 8353 8386 52 + . . scaffold1010 TRF Tandem_Repeat 22467 22497 62 + . . scaffold1010 TRF Tandem_Repeat 24501 24543 86 + . . scaffold1010 GLEAN mRNA 29808 38679 1 - . ID=CGI_10002873; scaffold1010 GLEAN promoter 38680 39679 1 - . ID=CGI_10002873; scaffold1010 WUBlastX DNA_hAT-Tip100 42624 42968 86 - . . scaffold1010 WUBlastX DNA_hAT-Tip100 42741 42974 179 - . . scaffold1010 WUBlastX DNA_hAT-Tip100 42759 43025 48 - . . scaffold1010 GLEAN promoter 43330 44329 1 + . ID=CGI_10002874; scaffold1010 GLEAN mRNA 44330 47188 1 + . ID=CGI_10002874; scaffold1010 TRF Tandem_Repeat 49758 49797 80 + . . scaffold1010 TRF Tandem_Repeat 51699 52417 1144 + . . scaffold1010 GLEAN mRNA 53067 55013 0.995556 - . ID=CGI_10002875; scaffold1010 GLEAN promoter 55014 56013 0.995556 - . ID=CGI_10002875; scaffold1010 TRF Tandem_Repeat 58129 58201 62 + . . scaffold1010 TRF Tandem_Repeat 58129 58201 62 + . . scaffold1014 GLEAN mRNA 6537 14657 0.651135 - . ID=CGI_10020255; scaffold1014 TRF Tandem_Repeat 9125 9173 80 + . . scaffold1014 TRF Tandem_Repeat 10630 10669 80 + . . scaffold1014 TRF Tandem_Repeat 14282 14579 183 + . . scaffold1014 GLEAN promoter 14658 15657 0.651135 - . ID=CGI_10020255; scaffold1014 TRF Tandem_Repeat 17789 17826 67 + . . scaffold1014 TRF Tandem_Repeat 21309 21342 50 + . . scaffold1014 WUBlastX DNA_hAT 23443 23739 80 - . . scaffold1014 WUBlastX DNA_hAT-Tip100 23884 23931 29 - . . scaffold1014 GLEAN promoter 24904 25903 1 + . ID=CGI_10020256; scaffold1014 GLEAN mRNA 25904 27145 1 + . ID=CGI_10020256; scaffold1014 TRF Tandem_Repeat 27702 28231 697 + . . scaffold1014 TRF Tandem_Repeat 27953 28185 187 + . . scaffold1014 WUBlastX LINE_L2 30901 31167 47 - . . scaffold1014 TRF Tandem_Repeat 33157 33384 323 + . . scaffold1014 GLEAN mRNA 36151 43571 0.999957 - . ID=CGI_10020257; scaffold1014 TRF Tandem_Repeat 41410 41660 312 + . . scaffold1014 GLEAN promoter 43572 44571 0.999957 - . ID=CGI_10020257; scaffold1014 GLEAN mRNA 45232 52544 0.65849 - . ID=CGI_10020258; scaffold1014 GLEAN promoter 52545 53544 0.65849 - . ID=CGI_10020258; scaffold1014 GLEAN mRNA 54704 56634 0.956935 - . ID=CGI_10020259; scaffold1014 GLEAN promoter 56635 57634 0.956935 - . ID=CGI_10020259; scaffold1014 WUBlastX DNA_MuDR 61321 62307 70 + . . scaffold1014 WUBlastX DNA_MuDR 61522 62238 101 + . . scaffold1014 WUBlastX DNA_NOF 61630 62025 184 + . . scaffold1014 WUBlastX DNA_NOF 61882 62265 315 + . . scaffold1014 GLEAN promoter 63220 64219 0.980298 + . ID=CGI_10020260; scaffold1014 GLEAN mRNA 64220 75452 0.980298 + . ID=CGI_10020260; scaffold1014 WUBlastX DNA_NOF 64596 65213 217 + . . scaffold1014 TRF Tandem_Repeat 69944 70146 121 + . . scaffold1014 TRF Tandem_Repeat 76134 78489 3041 + . . scaffold1014 TRF Tandem_Repeat 76134 78121 2838 + . . scaffold1014 TRF Tandem_Repeat 78264 78489 300 + . . scaffold1014 GLEAN promoter 83475 84474 1 + . ID=CGI_10020261; scaffold1014 GLEAN mRNA 84475 90993 1 + . ID=CGI_10020261; scaffold1014 TRF Tandem_Repeat 89421 89464 81 + . . scaffold1014 TRF Tandem_Repeat 90218 90403 130 + . . scaffold1014 TRF Tandem_Repeat 91778 91889 206 + . . scaffold1014 GLEAN promoter 94050 95049 1 + . ID=CGI_10020262; scaffold1014 GLEAN mRNA 95050 99366 1 + . ID=CGI_10020262; scaffold1014 GLEAN promoter 102054 103053 0.990647 + . ID=CGI_10020263; scaffold1014 GLEAN mRNA 103054 105340 0.990647 + . ID=CGI_10020263; scaffold1014 GLEAN promoter 104362 105361 0.547668 + . ID=CGI_10020264; scaffold1014 GLEAN mRNA 105362 157672 0.547668 + . ID=CGI_10020264; scaffold1014 TRF Tandem_Repeat 128954 129178 186 + . . scaffold1014 TRF Tandem_Repeat 139674 140605 1468 + . . scaffold1014 TRF Tandem_Repeat 139674 140605 1487 + . . scaffold1014 TRF Tandem_Repeat 143502 143533 55 + . . scaffold1014 TRF Tandem_Repeat 148266 149122 1374 + . . scaffold1014 TRF Tandem_Repeat 149342 149398 71 + . . scaffold1014 TRF Tandem_Repeat 149345 149390 65 + . . scaffold1014 TRF Tandem_Repeat 150498 150897 225 + . . scaffold1014 TRF Tandem_Repeat 156439 156785 428 + . . scaffold1014 TRF Tandem_Repeat 158256 158606 616 + . . scaffold1014 TRF Tandem_Repeat 162610 164231 1890 + . . scaffold1014 TRF Tandem_Repeat 162610 164233 1892 + . . scaffold1014 TRF Tandem_Repeat 162610 164231 1880 + . . scaffold1014 GLEAN promoter 162668 163667 0.706516 + . ID=CGI_10020265; scaffold1014 GLEAN mRNA 163668 198956 0.706516 + . ID=CGI_10020265; scaffold1014 TRF Tandem_Repeat 168039 168406 92 + . . scaffold1014 TRF Tandem_Repeat 168078 168463 115 + . . scaffold1014 TRF Tandem_Repeat 168113 168336 79 + . . scaffold1014 TRF Tandem_Repeat 168142 168215 60 + . . scaffold1014 TRF Tandem_Repeat 168143 168211 52 + . . scaffold1014 TRF Tandem_Repeat 171755 171801 94 + . . scaffold1014 TRF Tandem_Repeat 173066 173328 205 + . . scaffold1014 TRF Tandem_Repeat 191413 191663 213 + . . scaffold1014 TRF Tandem_Repeat 197367 197501 78 + . . scaffold1014 GLEAN promoter 200238 201237 1 + . ID=CGI_10020266; scaffold1014 GLEAN mRNA 201238 209007 1 + . ID=CGI_10020266; scaffold1014 TRF Tandem_Repeat 204755 205479 1234 + . . scaffold1014 GLEAN promoter 224298 225297 0.258243 + . ID=CGI_10020267; scaffold1014 GLEAN mRNA 225298 237297 0.258243 + . ID=CGI_10020267; scaffold1014 WUBlastX DNA_TcMar-Tc1 239790 240833 299 - . . scaffold1014 TRF Tandem_Repeat 277785 277848 110 + . . scaffold1014 WUBlastX LINE_RTE-X 292052 292186 27 - . . scaffold1014 WUBlastX LINE_RTE-X 292140 292361 121 - . . scaffold1014 WUBlastX LINE_RTE-X 292212 292463 69 - . . scaffold1014 TRF Tandem_Repeat 298802 298856 110 + . . scaffold1014 GLEAN promoter 304837 305836 1 + . ID=CGI_10020268; scaffold1014 GLEAN mRNA 305837 312879 1 + . ID=CGI_10020268; scaffold1014 TRF Tandem_Repeat 319121 319799 643 + . . scaffold1014 TRF Tandem_Repeat 319121 319799 656 + . . scaffold1014 TRF Tandem_Repeat 319121 319799 583 + . . scaffold1014 TRF Tandem_Repeat 329063 329151 133 + . . scaffold1014 TRF Tandem_Repeat 331991 332347 581 + . . scaffold1014 TRF Tandem_Repeat 332588 332805 177 + . . scaffold1014 GLEAN mRNA 343088 343492 0.59188 - . ID=CGI_10020269; scaffold1014 GLEAN promoter 343493 344492 0.59188 - . ID=CGI_10020269; scaffold1014 GLEAN mRNA 346473 349444 0.955707 - . ID=CGI_10020270; scaffold1014 TRF Tandem_Repeat 348043 348068 52 + . . scaffold1014 GLEAN promoter 349445 350444 0.955707 - . ID=CGI_10020270; scaffold1014 TRF Tandem_Repeat 353731 353965 420 + . . scaffold1014 TRF Tandem_Repeat 354731 354769 78 + . . scaffold1014 TRF Tandem_Repeat 357867 357913 94 + . . scaffold1014 TRF Tandem_Repeat 368344 368479 202 + . . scaffold1014 TRF Tandem_Repeat 368626 368799 208 + . . scaffold1014 TRF Tandem_Repeat 370574 370636 126 + . . scaffold1014 TRF Tandem_Repeat 370713 370753 73 + . . scaffold1014 TRF Tandem_Repeat 377776 377854 158 + . . scaffold1014 WUBlastX LTR_Gypsy 383120 386440 1235 + . . scaffold1014 WUBlastX LTR_Gypsy 386147 386494 76 + . . scaffold1014 WUBlastX LTR_Gypsy 387184 387819 335 + . . scaffold1014 WUBlastX LTR_Gypsy 387295 387822 421 + . . scaffold1014 WUBlastX LTR_Gypsy 387833 388402 246 + . . scaffold1014 WUBlastX LTR_Gypsy 387839 388288 362 + . . scaffold1014 GLEAN mRNA 388530 388844 0.743673 - . ID=CGI_10020272; scaffold1014 GLEAN promoter 388845 389844 0.743673 - . ID=CGI_10020272; scaffold1014 TRF Tandem_Repeat 410370 411328 1395 + . . scaffold1014 TRF Tandem_Repeat 411359 411398 53 + . . scaffold1014 TRF Tandem_Repeat 419967 420001 70 + . . scaffold1014 TRF Tandem_Repeat 428519 428567 89 + . . scaffold1014 TRF Tandem_Repeat 429251 429513 77 + . . scaffold1014 TRF Tandem_Repeat 432409 432442 68 + . . scaffold1014 TRF Tandem_Repeat 446663 446714 104 + . . scaffold1014 WUBlastX LINE_RTE-X 472096 472803 155 - . . scaffold1014 TRF Tandem_Repeat 481903 481984 55 + . . scaffold1014 GLEAN mRNA 485363 517722 0.614012 - . ID=CGI_10020274; scaffold1014 TRF Tandem_Repeat 498442 499256 1209 + . . scaffold1014 TRF Tandem_Repeat 501327 501400 94 + . . scaffold1014 TRF Tandem_Repeat 501327 501400 85 + . . scaffold1014 TRF Tandem_Repeat 506238 506297 93 + . . scaffold1014 TRF Tandem_Repeat 506238 506297 75 + . . scaffold1014 WUBlastX DNA_Crypton 516205 516987 31 - . . scaffold1014 WUBlastX DNA_Crypton 516343 517020 65 - . . scaffold1014 GLEAN promoter 517723 518722 0.614012 - . ID=CGI_10020274; scaffold1014 TRF Tandem_Repeat 520894 521034 141 + . . scaffold1014 TRF Tandem_Repeat 520905 521034 185 + . . scaffold1014 TRF Tandem_Repeat 521108 521141 59 + . . scaffold1014 WUBlastX DNA_Crypton 536600 536827 47 - . . scaffold1014 WUBlastX DNA_Crypton 536815 537279 134 - . . scaffold1014 WUBlastX DNA_Crypton 536818 537372 91 - . . scaffold1014 WUBlastX DNA_Crypton 538265 538474 38 - . . scaffold1014 WUBlastX DNA_TcMar-Fot1 550612 551568 277 + . . scaffold1014 WUBlastX DNA_TcMar-Fot1 551523 552275 104 + . . scaffold1014 WUBlastX DNA_TcMar-Fot1 551529 552440 48 + . . scaffold1014 GLEAN mRNA 561207 594372 0.621641 - . ID=CGI_10020275; scaffold1014 TRF Tandem_Repeat 564193 564961 1202 + . . scaffold1014 TRF Tandem_Repeat 569597 569624 56 + . . scaffold1014 TRF Tandem_Repeat 572663 573371 940 + . . scaffold1014 WUBlastX LINE_L1-Tx1 591370 591849 279 - . . scaffold1014 WUBlastX LINE_L1-Tx1 591569 592495 261 - . . scaffold1014 WUBlastX LINE_L1 592492 592731 91 - . . scaffold1014 WUBlastX LINE_L1-Tx1 592692 593300 385 - . . scaffold1014 WUBlastX LINE_L2 593595 594122 82 - . . scaffold1014 WUBlastX LINE_L2 593685 594149 89 - . . scaffold1014 GLEAN promoter 594373 595372 0.621641 - . ID=CGI_10020275; scaffold1014 TRF Tandem_Repeat 595194 595245 104 + . . scaffold1014 TRF Tandem_Repeat 595621 595692 62 + . . scaffold1014 WUBlastX DNA_TcMar-Fot1 595986 596465 47 + . . scaffold1014 WUBlastX DNA_TcMar-Pogo 596016 596390 263 + . . scaffold1014 WUBlastX DNA_TcMar-Pogo 596690 597115 34 + . . scaffold1014 WUBlastX DNA_TcMar-Tc2 596741 596920 48 + . . scaffold1014 GLEAN promoter 600170 601169 0.999736 + . ID=CGI_10020276; scaffold1014 GLEAN mRNA 601170 602381 0.999736 + . ID=CGI_10020276; scaffold1014 GLEAN promoter 602922 603921 0.441524 + . ID=CGI_10020277; scaffold1014 GLEAN mRNA 603922 617863 0.441524 + . ID=CGI_10020277; scaffold1014 TRF Tandem_Repeat 616596 616661 105 + . . scaffold1014 WUBlastX DNA_Harbinger 626277 626492 90 + . . scaffold1014 WUBlastX DNA_Harbinger 626459 627058 225 + . . scaffold1014 WUBlastX DNA_Harbinger 627031 627075 26 + . . scaffold1014 WUBlastX DNA_Harbinger 627031 627084 24 + . . scaffold1014 GLEAN mRNA 627540 627743 1 - . ID=CGI_10020278; scaffold1014 GLEAN promoter 627744 628743 1 - . ID=CGI_10020278; scaffold1014 TRF Tandem_Repeat 628779 628838 104 + . . scaffold1014 TRF Tandem_Repeat 631313 631379 125 + . . scaffold1014 TRF Tandem_Repeat 639598 639637 80 + . . scaffold1014 GLEAN mRNA 642826 643780 1 - . ID=CGI_10020279; scaffold1014 GLEAN promoter 643781 643988 1 - . ID=CGI_10020279; scaffold1016 GLEAN mRNA 1708 9466 1 - . ID=CGI_10016882; scaffold1016 GLEAN promoter 8814 9813 1 + . ID=CGI_10016883; scaffold1016 GLEAN promoter 9467 10466 1 - . ID=CGI_10016882; scaffold1016 GLEAN mRNA 9814 15451 1 + . ID=CGI_10016883; scaffold1016 GLEAN mRNA 28336 34626 0.63459 - . ID=CGI_10016884; scaffold1016 GLEAN promoter 34627 35626 0.63459 - . ID=CGI_10016884; scaffold1016 TRF Tandem_Repeat 44428 44507 160 + . . scaffold1016 TRF Tandem_Repeat 65061 65125 94 + . . scaffold1016 TRF Tandem_Repeat 65066 65124 82 + . . scaffold1016 TRF Tandem_Repeat 65070 65125 67 + . . scaffold1016 TRF Tandem_Repeat 91973 92014 84 + . . scaffold1016 GLEAN promoter 96055 97054 0.991809 + . ID=CGI_10016885; scaffold1016 GLEAN mRNA 97055 97743 0.991809 + . ID=CGI_10016885; scaffold1016 WUBlastX DNA_Kolobok 97863 98090 130 + . . scaffold1016 WUBlastX LINE_RTE-X 98276 98383 30 + . . scaffold1016 WUBlastX LINE_RTE-X 98551 98883 56 + . . scaffold1016 WUBlastX LINE_L1-Tx1 100676 101476 98 - . . scaffold1016 WUBlastX LINE_L1-Tx1 100819 101298 100 - . . scaffold1016 WUBlastX LINE_L1 100972 101379 134 - . . scaffold1016 WUBlastX LINE_L1-Tx1 101029 101319 170 - . . scaffold1016 WUBlastX LINE_L1-Tx1 101294 101470 113 - . . scaffold1016 WUBlastX LINE_L1-Tx1 101315 101512 64 - . . scaffold1016 WUBlastX LINE_L1 101369 101542 36 - . . scaffold1016 WUBlastX LINE_L1-Tx1 101551 101625 24 - . . scaffold1016 WUBlastX LINE_L1 101563 101616 34 - . . scaffold1016 WUBlastX LINE_L1-Tx1 101637 102317 32 - . . scaffold1016 WUBlastX LINE_L1 101901 102314 46 - . . scaffold1016 WUBlastX LINE_L1-Tx1 102027 102317 119 - . . scaffold1016 WUBlastX LINE_Jockey 102072 102386 49 - . . scaffold1016 WUBlastX LINE_L1 102319 102399 41 - . . scaffold1016 TRF Tandem_Repeat 105412 106665 1243 + . . scaffold1016 WUBlastX LINE_L1-Tx1 130190 130702 33 - . . scaffold1016 WUBlastX LINE_L1-Tx1 130280 130708 210 - . . scaffold1016 WUBlastX LINE_L1-Tx1 130280 130906 148 - . . scaffold1016 WUBlastX LINE_L1 130908 130991 20 - . . scaffold1016 WUBlastX LINE_L1-Tx1 130977 131147 23 - . . scaffold1016 WUBlastX LINE_L1-Tx1 131210 131269 37 - . . scaffold1016 WUBlastX LINE_L1 131353 131889 68 - . . scaffold1016 WUBlastX LINE_L1-Tx1 131467 131892 108 - . . scaffold1016 WUBlastX LINE_L1 131900 131974 43 - . . scaffold1016 WUBlastX LINE_L1-Tx1 132105 132152 20 + . . scaffold1016 WUBlastX LINE_L1-Tx1 132810 133055 60 + . . scaffold1016 WUBlastX LINE_L1-Tx1 132849 133040 78 + . . scaffold1016 WUBlastX LINE_L1-Tx1 132958 133449 36 + . . scaffold1016 WUBlastX LINE_L1-Tx1 133054 133371 59 + . . scaffold1016 WUBlastX LINE_L1 133054 133212 73 + . . scaffold1016 WUBlastX LINE_L1 133715 133852 23 + . . scaffold1016 WUBlastX LINE_L1 135110 135364 31 + . . scaffold1016 GLEAN promoter 136264 137263 0.989212 + . ID=CGI_10016886; scaffold1016 GLEAN mRNA 137264 139312 0.989212 + . ID=CGI_10016886; scaffold1016 TRF Tandem_Repeat 145142 145171 60 + . . scaffold1016 WUBlastX LINE_RTE-X 147558 148310 169 - . . scaffold1016 WUBlastX LINE_RTE-X 148119 148403 22 - . . scaffold1016 WUBlastX LINE_RTE-X 148965 150188 354 - . . scaffold1016 WUBlastX LINE_RTE-X 150166 150402 176 - . . scaffold1016 WUBlastX LINE_CR1 150166 150477 86 - . . scaffold1016 WUBlastX LINE_RTE-BovB 150169 150666 54 - . . scaffold1016 GLEAN mRNA 151877 155965 1 - . ID=CGI_10016887; scaffold1016 TRF Tandem_Repeat 152177 152333 224 + . . scaffold1016 TRF Tandem_Repeat 152522 152615 89 + . . scaffold1016 TRF Tandem_Repeat 152699 152841 124 + . . scaffold1016 WUBlastX LINE_Penelope 153516 153779 46 + . . scaffold1016 GLEAN promoter 155966 156965 1 - . ID=CGI_10016887; scaffold1016 WUBlastX LINE_L2 159229 159501 21 - . . scaffold1016 TRF Tandem_Repeat 162355 162380 52 + . . scaffold1016 TRF Tandem_Repeat 163302 163421 231 + . . scaffold1016 TRF Tandem_Repeat 163539 163663 223 + . . scaffold1016 WUBlastX DNA_TcMar-Tc1 164760 164939 46 - . . scaffold1016 WUBlastX DNA_TcMar-Tc1 164935 165282 55 - . . scaffold1016 TRF Tandem_Repeat 166815 166979 262 + . . scaffold1016 TRF Tandem_Repeat 169266 169303 76 + . . scaffold1016 WUBlastX LINE_RTE-X 175078 175752 131 - . . scaffold1016 WUBlastX LINE_RTE-X 175231 175749 146 - . . scaffold1016 WUBlastX LTR_Gypsy 180638 180850 158 + . . scaffold1016 WUBlastX LTR_Gypsy 180678 181493 169 + . . scaffold1016 WUBlastX LTR_Gypsy 180834 181775 521 + . . scaffold1016 WUBlastX LTR_Gypsy 181784 182713 980 + . . scaffold1016 WUBlastX LTR_Gypsy 182716 184548 1381 + . . scaffold1016 WUBlastX LTR_Gypsy 184510 184566 33 + . . scaffold1016 TRF Tandem_Repeat 189720 189832 58 + . . scaffold1016 GLEAN mRNA 192564 202987 0.773917 - . ID=CGI_10016888; scaffold1016 TRF Tandem_Repeat 202463 202548 84 + . . scaffold1016 TRF Tandem_Repeat 202463 202536 84 + . . scaffold1016 GLEAN promoter 202988 203987 0.773917 - . ID=CGI_10016888; scaffold1016 TRF Tandem_Repeat 203360 203450 146 + . . scaffold1016 TRF Tandem_Repeat 203416 203505 90 + . . scaffold1016 TRF Tandem_Repeat 205098 205204 142 + . . scaffold1016 TRF Tandem_Repeat 206234 206305 128 + . . scaffold1016 TRF Tandem_Repeat 212844 212914 133 + . . scaffold1016 TRF Tandem_Repeat 215963 216041 60 + . . scaffold1016 WUBlastX LINE_RTE-X 223396 224811 500 + . . scaffold1016 WUBlastX LINE_CR1-L2 224743 224826 25 + . . scaffold1016 WUBlastX LINE_RTE-BovB 225007 225069 29 + . . scaffold1016 WUBlastX LINE_RTE-X 225084 227135 844 + . . scaffold1016 TRF Tandem_Repeat 236711 236778 122 + . . scaffold1016 GLEAN promoter 238093 239092 0.481188 + . ID=CGI_10016889; scaffold1016 GLEAN mRNA 239093 239488 0.481188 + . ID=CGI_10016889; scaffold1016 TRF Tandem_Repeat 241516 241562 58 + . . scaffold1016 GLEAN mRNA 243615 249720 0.734139 - . ID=CGI_10016890; scaffold1016 TRF Tandem_Repeat 246923 246952 60 + . . scaffold1016 GLEAN promoter 249721 250720 0.734139 - . ID=CGI_10016890; scaffold1016 GLEAN mRNA 272595 292035 0.804509 - . ID=CGI_10016891; scaffold1016 WUBlastX DNA_P 283867 284538 43 - . . scaffold1016 WUBlastX DNA_P 283873 284367 69 - . . scaffold1016 WUBlastX DNA_P 283942 284322 92 - . . scaffold1016 GLEAN promoter 286642 287641 0.529811 + . ID=CGI_10016892; scaffold1016 GLEAN mRNA 287642 288513 0.529811 + . ID=CGI_10016892; scaffold1016 GLEAN promoter 292036 293035 0.804509 - . ID=CGI_10016891; scaffold1016 WUBlastX DNA_Maverick 299617 300318 439 - . . scaffold1016 WUBlastX LTR_Gypsy 300160 300402 21 - . . scaffold1016 GLEAN mRNA 300683 301156 0.999661 - . ID=CGI_10016893; scaffold1016 GLEAN promoter 301157 302156 0.999661 - . ID=CGI_10016893; scaffold1016 WUBlastX LTR_Ngaro 304287 304694 117 - . . scaffold1016 WUBlastX LTR_Ngaro 304474 304734 60 - . . scaffold1016 WUBlastX LTR_Ngaro 304648 304815 36 - . . scaffold1016 GLEAN mRNA 305223 309571 0.991277 - . ID=CGI_10016894; scaffold1016 WUBlastX LINE_L1 306261 306518 21 + . . scaffold1016 WUBlastX LINE_L1 306363 306545 63 + . . scaffold1016 WUBlastX LINE_L1-Tx1 306544 306672 96 + . . scaffold1016 WUBlastX LINE_L1-Tx1 306665 307249 178 + . . scaffold1016 WUBlastX LINE_L1-Tx1 308033 308197 39 + . . scaffold1016 WUBlastX LINE_L1-Tx1 308211 308345 56 + . . scaffold1016 GLEAN promoter 309572 310571 0.991277 - . ID=CGI_10016894; scaffold1016 GLEAN promoter 309747 310746 0.968712 + . ID=CGI_10016895; scaffold1016 GLEAN mRNA 310747 311100 0.968712 + . ID=CGI_10016895; scaffold1016 WUBlastX LTR_Gypsy 311033 311686 65 + . . scaffold1016 WUBlastX LTR_Gypsy 311042 311491 90 + . . scaffold1016 WUBlastX LTR_Gypsy 312086 312250 52 + . . scaffold1016 WUBlastX LTR_Gypsy 312137 312289 33 + . . scaffold1016 WUBlastX LTR_Gypsy 312409 313419 272 + . . scaffold1016 WUBlastX LTR_Gypsy 313015 313662 102 + . . scaffold1016 WUBlastX LTR_Gypsy 314125 314202 20 + . . scaffold1016 TRF Tandem_Repeat 315367 315394 56 + . . scaffold1016 TRF Tandem_Repeat 320942 320967 52 + . . scaffold1016 TRF Tandem_Repeat 321801 321857 114 + . . scaffold1016 TRF Tandem_Repeat 328438 328489 104 + . . scaffold1016 TRF Tandem_Repeat 335340 335384 90 + . . scaffold1016 TRF Tandem_Repeat 341982 343677 2830 + . . scaffold1016 WUBlastX DNA_Crypton 350501 350848 64 - . . scaffold1016 TRF Tandem_Repeat 354790 354839 55 + . . scaffold1016 GLEAN mRNA 355163 355871 1 - . ID=CGI_10016897; scaffold1016 GLEAN promoter 355872 356871 1 - . ID=CGI_10016897; scaffold1016 WUBlastX LINE_L1 373430 373948 21 + . . scaffold1016 WUBlastX LINE_L1-Tx1 373517 373771 25 + . . scaffold1016 WUBlastX LINE_L2 374393 375397 299 + . . scaffold1016 WUBlastX LINE_CR1-L2 374549 376090 919 + . . scaffold1016 WUBlastX DNA_Merlin 393034 393522 177 - . . scaffold1016 WUBlastX DNA_Merlin 393112 393540 191 - . . scaffold1016 TRF Tandem_Repeat 400340 400443 122 + . . scaffold1016 TRF Tandem_Repeat 408130 408247 128 + . . scaffold1016 TRF Tandem_Repeat 408130 408220 137 + . . scaffold1016 TRF Tandem_Repeat 408186 408275 99 + . . scaffold1016 TRF Tandem_Repeat 409902 410003 132 + . . scaffold1016 WUBlastX LINE_CR1-L2 419797 420465 134 + . . scaffold1016 WUBlastX LINE_CR1-L2 420123 420794 90 + . . scaffold1016 TRF Tandem_Repeat 430564 430630 120 + . . scaffold1016 GLEAN promoter 433053 434052 0.686938 + . ID=CGI_10016898; scaffold1016 WUBlastX DNA_IS4EU 433861 434250 73 + . . scaffold1016 GLEAN mRNA 434053 435120 0.686938 + . ID=CGI_10016898; scaffold1016 GLEAN promoter 434265 435264 0.995791 + . ID=CGI_10016900; scaffold1016 GLEAN mRNA 435175 436881 0.999985 - . ID=CGI_10016899; scaffold1016 GLEAN mRNA 435265 443868 0.995791 + . ID=CGI_10016900; scaffold1016 TRF Tandem_Repeat 436147 436197 102 + . . scaffold1016 TRF Tandem_Repeat 436430 436483 99 + . . scaffold1016 GLEAN promoter 436882 437881 0.999985 - . ID=CGI_10016899; scaffold1016 TRF Tandem_Repeat 447950 448004 85 + . . scaffold1016 TRF Tandem_Repeat 449672 449731 120 + . . scaffold1016 TRF Tandem_Repeat 456187 456287 66 + . . scaffold1016 TRF Tandem_Repeat 456228 456435 220 + . . scaffold1016 TRF Tandem_Repeat 456281 456435 80 + . . scaffold1016 TRF Tandem_Repeat 456366 456435 52 + . . scaffold1016 TRF Tandem_Repeat 457256 457303 96 + . . scaffold1016 TRF Tandem_Repeat 458229 458323 154 + . . scaffold1016 TRF Tandem_Repeat 460604 460835 166 + . . scaffold1016 TRF Tandem_Repeat 460645 460857 80 + . . scaffold1016 TRF Tandem_Repeat 460774 460867 72 + . . scaffold1016 WUBlastX LTR_Copia 460953 461222 54 + . . scaffold1016 WUBlastX LTR_Gypsy 461022 463529 1205 + . . scaffold1016 WUBlastX LTR_Gypsy 461661 463529 1276 + . . scaffold1016 WUBlastX LTR_Gypsy 463447 464121 452 + . . scaffold1016 WUBlastX LTR_Gypsy 464102 464377 219 + . . scaffold1016 WUBlastX LTR_Gypsy 464138 464590 124 + . . scaffold1016 GLEAN promoter 464149 465148 0.368436 + . ID=CGI_10016901; scaffold1016 GLEAN mRNA 465149 467050 0.368436 + . ID=CGI_10016901; scaffold1016 GLEAN promoter 466114 467113 0.532282 + . ID=CGI_10016902; scaffold1016 GLEAN mRNA 467114 469577 0.532282 + . ID=CGI_10016902; scaffold1016 WUBlastX DNA_Kolobok 467768 467989 42 + . . scaffold1016 WUBlastX DNA_Kolobok 468113 468271 37 + . . scaffold1016 WUBlastX DNA_Kolobok 468273 468362 33 + . . scaffold1016 WUBlastX DNA_Kolobok 468926 469234 92 + . . scaffold1016 TRF Tandem_Repeat 476272 476321 100 + . . scaffold1016 WUBlastX LINE_L1 484127 484552 159 + . . scaffold1017 GLEAN mRNA 2075 8937 1 - . ID=CGI_10024977; scaffold1017 WUBlastX LINE_L1 3071 3406 28 + . . scaffold1017 WUBlastX LINE_L1-Tx1 3128 4381 357 + . . scaffold1017 GLEAN promoter 8938 9937 1 - . ID=CGI_10024977; scaffold1017 TRF Tandem_Repeat 10390 10566 354 + . . scaffold1017 GLEAN mRNA 10807 26033 0.999879 - . ID=CGI_10024978; scaffold1017 TRF Tandem_Repeat 11243 11283 55 + . . scaffold1017 GLEAN promoter 26034 27033 0.999879 - . ID=CGI_10024978; scaffold1017 GLEAN mRNA 26278 29583 1 - . ID=CGI_10024979; scaffold1017 GLEAN promoter 29584 30583 1 - . ID=CGI_10024979; scaffold1017 WUBlastX LINE_CR1 32634 32735 23 + . . scaffold1017 WUBlastX LINE_RTE-BovB 33262 33438 106 + . . scaffold1017 WUBlastX LINE_RTE-BovB 33332 33889 132 + . . scaffold1017 WUBlastX LINE_RTE-BovB 33452 34177 529 + . . scaffold1017 WUBlastX LINE_CR1 34410 34490 20 + . . scaffold1017 TRF Tandem_Repeat 40033 40780 937 + . . scaffold1017 GLEAN mRNA 46180 63837 0.999676 - . ID=CGI_10024980; scaffold1017 WUBlastX LINE_RTE-X 58507 58833 34 - . . scaffold1017 WUBlastX LINE_RTE-X 58627 58827 85 - . . scaffold1017 GLEAN promoter 63838 64837 0.999676 - . ID=CGI_10024980; scaffold1017 TRF Tandem_Repeat 71408 72274 1040 + . . scaffold1017 TRF Tandem_Repeat 73935 73993 118 + . . scaffold1017 GLEAN promoter 75822 76821 1 + . ID=CGI_10024981; scaffold1017 TRF Tandem_Repeat 75889 76296 433 + . . scaffold1017 GLEAN mRNA 76822 80515 1 + . ID=CGI_10024981; scaffold1017 TRF Tandem_Repeat 80897 80946 84 + . . scaffold1017 WUBlastX LINE_I 81695 81832 28 + . . scaffold1017 WUBlastX LINE_Jockey 82524 82601 20 + . . scaffold1017 WUBlastX LINE_RTE-X 82765 83112 179 + . . scaffold1017 WUBlastX LINE_RTE-X 83114 83317 105 + . . scaffold1017 WUBlastX LINE_Proto2 83244 83492 102 + . . scaffold1017 WUBlastX LINE_Proto2 83259 83594 93 + . . scaffold1017 WUBlastX LINE_RTE-X 83543 83725 61 + . . scaffold1017 WUBlastX LINE_RTE-RTE 83648 83740 26 + . . scaffold1017 WUBlastX LINE_RTE-X 84055 84138 21 + . . scaffold1017 WUBlastX LINE_RTE-X 84055 84108 34 + . . scaffold1017 WUBlastX LINE_RTE-X 84278 84496 46 + . . scaffold1017 WUBlastX LINE_RTE-X 84287 84541 40 + . . scaffold1017 TRF Tandem_Repeat 84891 85040 291 + . . scaffold1017 WUBlastX LINE_RTE-X 86706 86858 70 + . . scaffold1017 WUBlastX LINE_RTE-X 86706 87059 30 + . . scaffold1017 WUBlastX LINE_RTE-X 86706 86897 54 + . . scaffold1017 WUBlastX LINE_RTE-X 87187 87240 34 + . . scaffold1017 WUBlastX LINE_RTE-X 87410 87628 42 + . . scaffold1017 WUBlastX LINE_RTE-X 87446 87655 56 + . . scaffold1017 GLEAN promoter 88381 89380 0.662353 + . ID=CGI_10024982; scaffold1017 GLEAN mRNA 89381 134984 0.662353 + . ID=CGI_10024982; scaffold1017 TRF Tandem_Repeat 95667 96480 1385 + . . scaffold1017 TRF Tandem_Repeat 97221 97929 1149 + . . scaffold1017 TRF Tandem_Repeat 97225 97929 911 + . . scaffold1017 TRF Tandem_Repeat 106287 106349 55 + . . scaffold1017 TRF Tandem_Repeat 111598 111855 394 + . . scaffold1017 TRF Tandem_Repeat 114815 114846 55 + . . scaffold1017 TRF Tandem_Repeat 121699 121749 102 + . . scaffold1017 TRF Tandem_Repeat 123178 123214 74 + . . scaffold1017 TRF Tandem_Repeat 129967 131082 1739 + . . scaffold1017 TRF Tandem_Repeat 137717 138651 943 + . . scaffold1017 TRF Tandem_Repeat 137744 139515 1594 + . . scaffold1017 TRF Tandem_Repeat 138738 139515 753 + . . scaffold1017 TRF Tandem_Repeat 141099 141347 392 + . . scaffold1017 TRF Tandem_Repeat 141350 142323 800 + . . scaffold1017 TRF Tandem_Repeat 142498 142715 382 + . . scaffold1017 GLEAN mRNA 143450 161592 0.847837 - . ID=CGI_10024983; scaffold1017 TRF Tandem_Repeat 143713 143916 345 + . . scaffold1017 TRF Tandem_Repeat 148235 148499 291 + . . scaffold1017 TRF Tandem_Repeat 149318 149454 172 + . . scaffold1017 GLEAN promoter 152598 153597 0.999675 + . ID=CGI_10024984; scaffold1017 GLEAN mRNA 153598 168483 0.999675 + . ID=CGI_10024984; scaffold1017 GLEAN promoter 161593 162592 0.847837 - . ID=CGI_10024983; scaffold1017 GLEAN mRNA 179463 181370 0.99883 - . ID=CGI_10024985; scaffold1017 GLEAN promoter 180799 181798 0.999675 + . ID=CGI_10024986; scaffold1017 GLEAN promoter 181371 182370 0.99883 - . ID=CGI_10024985; scaffold1017 GLEAN mRNA 181799 198515 0.999675 + . ID=CGI_10024986; scaffold1017 TRF Tandem_Repeat 187626 187809 282 + . . scaffold1017 WUBlastX LTR_Copia 190946 191086 26 + . . scaffold1017 TRF Tandem_Repeat 194427 194582 145 + . . scaffold1017 GLEAN mRNA 200952 208069 0.813837 - . ID=CGI_10024987; scaffold1017 TRF Tandem_Repeat 205582 205709 109 + . . scaffold1017 GLEAN promoter 208070 209069 0.813837 - . ID=CGI_10024987; scaffold1017 GLEAN mRNA 210582 211238 0.999984 - . ID=CGI_10024988; scaffold1017 GLEAN promoter 211239 212238 0.999984 - . ID=CGI_10024988; scaffold1017 GLEAN promoter 211687 212686 0.911131 + . ID=CGI_10024989; scaffold1017 GLEAN mRNA 212687 242435 0.911131 + . ID=CGI_10024989; scaffold1017 TRF Tandem_Repeat 218189 218933 1224 + . . scaffold1017 TRF Tandem_Repeat 241759 241797 78 + . . scaffold1017 GLEAN mRNA 244805 247369 0.993907 - . ID=CGI_10024990; scaffold1017 TRF Tandem_Repeat 245450 245507 116 + . . scaffold1017 GLEAN promoter 247370 248369 0.993907 - . ID=CGI_10024990; scaffold1017 GLEAN mRNA 248569 249786 0.999676 - . ID=CGI_10024991; scaffold1017 GLEAN promoter 249787 250786 0.999676 - . ID=CGI_10024991; scaffold1017 GLEAN mRNA 253298 263587 0.999271 - . ID=CGI_10024992; scaffold1017 GLEAN promoter 263588 264587 0.999271 - . ID=CGI_10024992; scaffold1017 GLEAN promoter 264593 265592 0.406733 + . ID=CGI_10024993; scaffold1017 GLEAN mRNA 265593 276681 0.406733 + . ID=CGI_10024993; scaffold1017 TRF Tandem_Repeat 274979 275012 52 + . . scaffold1017 GLEAN promoter 277960 278959 1 + . ID=CGI_10024994; scaffold1017 GLEAN mRNA 278960 293257 1 + . ID=CGI_10024994; scaffold1017 TRF Tandem_Repeat 279273 279316 79 + . . scaffold1017 TRF Tandem_Repeat 285562 285622 122 + . . scaffold1017 TRF Tandem_Repeat 289069 289111 50 + . . scaffold1017 TRF Tandem_Repeat 289077 289114 58 + . . scaffold1017 GLEAN mRNA 297598 304251 0.992963 - . ID=CGI_10024995; scaffold1017 GLEAN promoter 304252 305251 0.992963 - . ID=CGI_10024995; scaffold1017 GLEAN promoter 310507 311506 0.937847 + . ID=CGI_10024996; scaffold1017 GLEAN mRNA 311507 320445 0.937847 + . ID=CGI_10024996; scaffold1017 GLEAN promoter 321667 322666 0.999351 + . ID=CGI_10024997; scaffold1017 GLEAN mRNA 322667 329051 0.999351 + . ID=CGI_10024997; scaffold1017 TRF Tandem_Repeat 334398 335549 1599 + . . scaffold1017 GLEAN mRNA 338557 340791 1 - . ID=CGI_10024998; scaffold1017 GLEAN promoter 340468 341467 1 + . ID=CGI_10024999; scaffold1017 GLEAN promoter 340792 341791 1 - . ID=CGI_10024998; scaffold1017 TRF Tandem_Repeat 340997 341032 65 + . . scaffold1017 GLEAN mRNA 341468 344187 1 + . ID=CGI_10024999; scaffold1017 TRF Tandem_Repeat 348949 349025 102 + . . scaffold1017 GLEAN promoter 353026 354025 0.999855 + . ID=CGI_10025000; scaffold1017 GLEAN mRNA 354026 361878 0.999855 + . ID=CGI_10025000; scaffold1017 TRF Tandem_Repeat 357742 357776 70 + . . scaffold1017 TRF Tandem_Repeat 360101 360132 64 + . . scaffold1017 GLEAN promoter 363887 364886 0.974468 + . ID=CGI_10025001; scaffold1017 GLEAN mRNA 364887 380103 0.974468 + . ID=CGI_10025001; scaffold1017 GLEAN mRNA 381615 385759 0.777738 - . ID=CGI_10025002; scaffold1017 GLEAN promoter 383461 384460 1 + . ID=CGI_10025003; scaffold1017 GLEAN mRNA 384461 388394 1 + . ID=CGI_10025003; scaffold1017 GLEAN promoter 385760 386759 0.777738 - . ID=CGI_10025002; scaffold1017 GLEAN promoter 387778 388777 1 + . ID=CGI_10025004; scaffold1017 TRF Tandem_Repeat 388665 388711 94 + . . scaffold1017 GLEAN mRNA 388778 395235 1 + . ID=CGI_10025004; scaffold1017 TRF Tandem_Repeat 390919 391094 90 + . . scaffold1017 GLEAN mRNA 401226 402134 0.996199 - . ID=CGI_10025005; scaffold1017 GLEAN promoter 402135 403134 0.996199 - . ID=CGI_10025005; scaffold1017 GLEAN mRNA 402282 420963 0.940982 - . ID=CGI_10025006; scaffold1017 WUBlastX LINE_L2 403903 404178 76 + . . scaffold1017 TRF Tandem_Repeat 417503 417578 152 + . . scaffold1017 GLEAN promoter 420964 421963 0.940982 - . ID=CGI_10025006; scaffold1017 GLEAN mRNA 426577 466394 0.54139 - . ID=CGI_10025007; scaffold1017 GLEAN promoter 426951 427950 0.999949 + . ID=CGI_10025008; scaffold1017 TRF Tandem_Repeat 427053 427113 115 + . . scaffold1017 GLEAN mRNA 427951 447221 0.999949 + . ID=CGI_10025008; scaffold1017 TRF Tandem_Repeat 433168 433219 95 + . . scaffold1017 TRF Tandem_Repeat 453556 454122 301 + . . scaffold1017 TRF Tandem_Repeat 453587 454119 282 + . . scaffold1017 TRF Tandem_Repeat 453603 453764 135 + . . scaffold1017 TRF Tandem_Repeat 453818 454132 377 + . . scaffold1017 TRF Tandem_Repeat 454965 456251 1188 + . . scaffold1017 TRF Tandem_Repeat 464460 464506 51 + . . scaffold1017 GLEAN promoter 466395 467394 0.54139 - . ID=CGI_10025007; scaffold1017 TRF Tandem_Repeat 468369 469276 1252 + . . scaffold1017 TRF Tandem_Repeat 468369 469276 1259 + . . scaffold1017 TRF Tandem_Repeat 468369 469276 1077 + . . scaffold1017 GLEAN promoter 471107 472106 0.618241 + . ID=CGI_10025009; scaffold1017 GLEAN mRNA 472107 472610 0.618241 + . ID=CGI_10025009; scaffold1017 WUBlastX LINE_L2 472470 472589 22 + . . scaffold1017 WUBlastX LINE_L2 472544 472849 62 + . . scaffold1017 WUBlastX LINE_L2 472616 472849 84 + . . scaffold1017 GLEAN mRNA 474083 494190 0.986045 - . ID=CGI_10025010; scaffold1017 TRF Tandem_Repeat 475412 475547 139 + . . scaffold1017 TRF Tandem_Repeat 475452 475576 128 + . . scaffold1017 TRF Tandem_Repeat 476317 476350 50 + . . scaffold1017 TRF Tandem_Repeat 480864 480919 53 + . . scaffold1017 GLEAN promoter 494191 495190 0.986045 - . ID=CGI_10025010; scaffold1017 GLEAN mRNA 498861 500079 0.996228 - . ID=CGI_10025011; scaffold1017 GLEAN promoter 500080 501079 0.996228 - . ID=CGI_10025011; scaffold1017 GLEAN mRNA 500193 502732 0.908279 - . ID=CGI_10025012; scaffold1017 GLEAN promoter 502395 503394 0.653968 + . ID=CGI_10025013; scaffold1017 GLEAN promoter 502733 503732 0.908279 - . ID=CGI_10025012; scaffold1017 GLEAN mRNA 503395 509076 0.653968 + . ID=CGI_10025013; scaffold1017 TRF Tandem_Repeat 506903 506972 131 + . . scaffold1017 GLEAN mRNA 513799 533928 0.777349 - . ID=CGI_10025014; scaffold1017 TRF Tandem_Repeat 524039 524135 56 + . . scaffold1017 TRF Tandem_Repeat 524055 524151 81 + . . scaffold1017 GLEAN promoter 533929 534928 0.777349 - . ID=CGI_10025014; scaffold1017 TRF Tandem_Repeat 537366 537483 123 + . . scaffold1017 TRF Tandem_Repeat 537850 537951 105 + . . scaffold1017 GLEAN promoter 537869 538868 1 + . ID=CGI_10025015; scaffold1017 WUBlastX LTR_Pao 538845 538973 78 + . . scaffold1017 GLEAN mRNA 538869 545118 1 + . ID=CGI_10025015; scaffold1017 WUBlastX LTR_Pao 539864 539989 55 + . . scaffold1017 GLEAN promoter 548766 549765 0.728754 + . ID=CGI_10025016; scaffold1017 GLEAN mRNA 549766 560685 0.728754 + . ID=CGI_10025016; scaffold1017 TRF Tandem_Repeat 550525 550579 110 + . . scaffold1017 GLEAN promoter 567074 568073 0.999599 + . ID=CGI_10025017; scaffold1017 GLEAN mRNA 568074 582266 0.999599 + . ID=CGI_10025017; scaffold1017 GLEAN promoter 583364 584363 0.950882 + . ID=CGI_10025018; scaffold1017 GLEAN mRNA 584364 592493 0.950882 + . ID=CGI_10025018; scaffold1017 TRF Tandem_Repeat 591981 592009 58 + . . scaffold1017 TRF Tandem_Repeat 607613 607687 60 + . . scaffold1017 TRF Tandem_Repeat 607630 607687 116 + . . scaffold1017 WUBlastX LINE_L1 609806 609910 23 + . . scaffold1017 WUBlastX LINE_L1-Tx1 610395 611636 332 + . . scaffold1017 GLEAN promoter 614395 615394 0.732035 + . ID=CGI_10025019; scaffold1017 GLEAN mRNA 615395 620229 0.732035 + . ID=CGI_10025019; scaffold1017 TRF Tandem_Repeat 616435 616490 103 + . . scaffold1017 GLEAN promoter 619233 620232 0.789429 + . ID=CGI_10025020; scaffold1017 GLEAN mRNA 620233 621673 0.789429 + . ID=CGI_10025020; scaffold1017 TRF Tandem_Repeat 624021 624060 62 + . . scaffold1017 TRF Tandem_Repeat 624759 624808 66 + . . scaffold1017 TRF Tandem_Repeat 626022 627266 1624 + . . scaffold1017 WUBlastX LTR_Gypsy 628138 628905 230 + . . scaffold1017 WUBlastX LTR_Gypsy 628270 628905 284 + . . scaffold1017 WUBlastX LTR_Gypsy 628369 629199 344 + . . scaffold1017 WUBlastX LTR_Gypsy 628369 628893 371 + . . scaffold1017 WUBlastX LTR_Gypsy 628852 629289 156 + . . scaffold1017 WUBlastX LTR_Gypsy 629238 629432 119 + . . scaffold1017 WUBlastX LTR_Gypsy-Cigr 629241 629861 111 + . . scaffold1017 WUBlastX LTR_Gypsy 632231 632566 77 + . . scaffold1017 WUBlastX LTR_Gypsy-Cigr 632291 632608 111 + . . scaffold1017 WUBlastX LTR_Gypsy 632294 632497 134 + . . scaffold1017 WUBlastX LTR_Gypsy 632294 632545 130 + . . scaffold1017 WUBlastX LTR_Gypsy-Cigr 632601 632945 262 + . . scaffold1017 WUBlastX LTR_Gypsy 633416 633532 20 + . . scaffold1017 TRF Tandem_Repeat 637339 637400 115 + . . scaffold1017 WUBlastX LINE_L1-Tx1 637577 637858 29 - . . scaffold1017 WUBlastX LINE_L1-Tx1 638117 638524 78 - . . scaffold1017 WUBlastX LINE_L1-Tx1 638252 638518 79 - . . scaffold1017 WUBlastX LINE_L1 638437 639414 90 - . . scaffold1017 WUBlastX LINE_L1-Tx1 638608 639432 520 - . . scaffold1017 WUBlastX LINE_L1 639417 639476 23 - . . scaffold1017 WUBlastX LINE_L1 639859 639969 22 - . . scaffold1017 WUBlastX LINE_RTE-X 640689 640799 72 - . . scaffold1017 WUBlastX LINE_RTE-X 640931 640993 46 - . . scaffold1017 WUBlastX LINE_RTE-X 641032 641865 413 - . . scaffold1017 WUBlastX LINE_RTE-X 641867 642052 60 - . . scaffold1017 WUBlastX LINE_RTE-X 641897 642052 69 - . . scaffold1017 WUBlastX LINE_L2 641927 642076 50 - . . scaffold1017 WUBlastX LINE_RTE-BovB 641972 642109 22 - . . scaffold1017 WUBlastX LINE_RTE-X 642343 642567 36 - . . scaffold1017 TRF Tandem_Repeat 643560 643651 114 + . . scaffold1017 TRF Tandem_Repeat 643729 643887 171 + . . scaffold1017 TRF Tandem_Repeat 643938 644025 160 + . . scaffold1017 TRF Tandem_Repeat 644105 644198 82 + . . scaffold1017 TRF Tandem_Repeat 645647 646295 927 + . . scaffold1017 GLEAN promoter 646303 647302 0.998291 + . ID=CGI_10025022; scaffold1017 GLEAN mRNA 646868 647077 0.776794 - . ID=CGI_10025021; scaffold1017 GLEAN promoter 647078 648077 0.776794 - . ID=CGI_10025021; scaffold1017 GLEAN mRNA 647303 663354 0.998291 + . ID=CGI_10025022; scaffold1017 TRF Tandem_Repeat 651136 651181 92 + . . scaffold1017 TRF Tandem_Repeat 651811 651840 60 + . . scaffold1017 WUBlastX LINE_RTE-X 668997 669365 21 + . . scaffold1017 WUBlastX LINE_RTE-X 669054 669350 45 + . . scaffold1017 WUBlastX LINE_RTE-X 669060 669257 56 + . . scaffold1017 TRF Tandem_Repeat 670122 670161 80 + . . scaffold1017 TRF Tandem_Repeat 702041 702085 83 + . . scaffold1017 TRF Tandem_Repeat 706379 706846 711 + . . scaffold1017 TRF Tandem_Repeat 713410 713468 111 + . . scaffold1017 GLEAN promoter 713737 714736 0.628929 + . ID=CGI_10025023; scaffold1017 GLEAN mRNA 714737 717586 0.628929 + . ID=CGI_10025023; scaffold1017 TRF Tandem_Repeat 723264 723440 118 + . . scaffold1017 WUBlastX LINE_RTE-X 730598 731683 295 + . . scaffold1017 WUBlastX LINE_RTE-X 731686 733371 806 + . . scaffold1017 GLEAN promoter 733654 734653 0.648556 + . ID=CGI_10025024; scaffold1017 GLEAN mRNA 734654 737535 0.648556 + . ID=CGI_10025024; scaffold1017 GLEAN mRNA 742194 770876 1 - . ID=CGI_10025025; scaffold1017 TRF Tandem_Repeat 756752 757353 692 + . . scaffold1017 TRF Tandem_Repeat 756752 757353 814 + . . scaffold1017 TRF Tandem_Repeat 763714 763764 95 + . . scaffold1017 GLEAN promoter 770877 771876 1 - . ID=CGI_10025025; scaffold1017 TRF Tandem_Repeat 771714 771761 96 + . . scaffold1017 TRF Tandem_Repeat 772232 772323 94 + . . scaffold1017 GLEAN mRNA 776038 780261 1 - . ID=CGI_10025026; scaffold1017 GLEAN promoter 780053 781052 0.991247 + . ID=CGI_10025027; scaffold1017 GLEAN promoter 780262 781261 1 - . ID=CGI_10025026; scaffold1017 GLEAN mRNA 781053 782982 0.991247 + . ID=CGI_10025027; scaffold1017 WUBlastX DNA_hAT 781080 781292 57 + . . scaffold1017 WUBlastX DNA_hAT 781882 782343 24 + . . scaffold1017 TRF Tandem_Repeat 783555 783603 64 + . . scaffold1017 TRF Tandem_Repeat 783773 784518 1133 + . . scaffold1017 GLEAN mRNA 787938 793574 1 - . ID=CGI_10025028; scaffold1017 GLEAN promoter 793575 794574 1 - . ID=CGI_10025028; scaffold1017 TRF Tandem_Repeat 793606 793699 134 + . . scaffold1017 TRF Tandem_Repeat 798859 798938 81 + . . scaffold1017 GLEAN promoter 800279 801278 0.999949 + . ID=CGI_10025029; scaffold1017 GLEAN mRNA 801279 812191 0.999949 + . ID=CGI_10025029; scaffold1017 GLEAN mRNA 818238 826908 1 - . ID=CGI_10025030; scaffold1017 TRF Tandem_Repeat 819284 819430 167 + . . scaffold1017 TRF Tandem_Repeat 820248 821043 1145 + . . scaffold1017 TRF Tandem_Repeat 820248 821043 1150 + . . scaffold1017 TRF Tandem_Repeat 820248 821043 1152 + . . scaffold1017 TRF Tandem_Repeat 822424 822599 271 + . . scaffold1017 GLEAN promoter 826909 827908 1 - . ID=CGI_10025030; scaffold1017 GLEAN mRNA 828820 829277 0.593159 - . ID=CGI_10025031; scaffold1017 GLEAN promoter 829278 830277 0.593159 - . ID=CGI_10025031; scaffold1017 GLEAN promoter 839746 840745 0.764581 + . ID=CGI_10025032; scaffold1017 GLEAN mRNA 840746 847938 0.764581 + . ID=CGI_10025032; scaffold1017 TRF Tandem_Repeat 846489 846815 370 + . . scaffold1017 TRF Tandem_Repeat 855335 855399 130 + . . scaffold1017 GLEAN promoter 856415 857414 0.321654 + . ID=CGI_10025033; scaffold1017 TRF Tandem_Repeat 856614 856708 145 + . . scaffold1017 GLEAN mRNA 857415 874549 0.321654 + . ID=CGI_10025033; scaffold1017 WUBlastX LTR_Ngaro 876167 876553 122 + . . scaffold1017 WUBlastX LTR_Ngaro 876269 876547 131 + . . scaffold1017 WUBlastX LTR_Ngaro 876558 876767 57 + . . scaffold1017 WUBlastX LTR_Ngaro 876735 876788 24 + . . scaffold1017 WUBlastX LTR_Ngaro 877462 877752 52 + . . scaffold1017 WUBlastX LTR_Ngaro 877504 877737 89 + . . scaffold1017 WUBlastX LTR_Ngaro 877958 878080 28 + . . scaffold1017 TRF Tandem_Repeat 885784 885809 52 + . . scaffold1017 TRF Tandem_Repeat 895550 895587 76 + . . scaffold1017 TRF Tandem_Repeat 900148 900197 66 + . . scaffold1017 TRF Tandem_Repeat 904977 905022 65 + . . scaffold1017 TRF Tandem_Repeat 908183 908234 104 + . . scaffold1017 TRF Tandem_Repeat 917654 917695 77 + . . scaffold1017 TRF Tandem_Repeat 925346 925388 86 + . . scaffold1017 GLEAN promoter 932903 933902 0.859297 + . ID=CGI_10025034; scaffold1017 GLEAN mRNA 933903 972451 0.859297 + . ID=CGI_10025034; scaffold1017 TRF Tandem_Repeat 933966 935070 507 + . . scaffold1017 TRF Tandem_Repeat 934009 935092 907 + . . scaffold1017 TRF Tandem_Repeat 934073 935092 772 + . . scaffold1017 TRF Tandem_Repeat 934303 935092 823 + . . scaffold1017 TRF Tandem_Repeat 937515 937547 66 + . . scaffold1017 TRF Tandem_Repeat 941875 942138 476 + . . scaffold1017 TRF Tandem_Repeat 953721 954326 737 + . . scaffold1017 TRF Tandem_Repeat 967391 967446 94 + . . scaffold1017 TRF Tandem_Repeat 986655 986685 62 + . . scaffold1017 GLEAN promoter 988476 989475 0.999949 + . ID=CGI_10025035; scaffold1017 GLEAN mRNA 989476 1003450 0.999949 + . ID=CGI_10025035; scaffold1017 TRF Tandem_Repeat 1001891 1001946 112 + . . scaffold1017 GLEAN mRNA 1004206 1013816 0.989792 - . ID=CGI_10025036; scaffold1017 GLEAN promoter 1013817 1014816 0.989792 - . ID=CGI_10025036; scaffold1017 TRF Tandem_Repeat 1014431 1014501 142 + . . scaffold1017 GLEAN promoter 1017033 1018032 1 + . ID=CGI_10025037; scaffold1017 GLEAN mRNA 1018033 1020214 1 + . ID=CGI_10025037; scaffold1017 TRF Tandem_Repeat 1020390 1020439 100 + . . scaffold1017 TRF Tandem_Repeat 1020439 1020472 68 + . . scaffold1017 GLEAN mRNA 1020847 1022560 0.999999 - . ID=CGI_10025038; scaffold1017 GLEAN promoter 1022561 1023560 0.999999 - . ID=CGI_10025038; scaffold1018 GLEAN promoter 1 586 1 + . ID=CGI_10019751; scaffold1018 GLEAN mRNA 587 6345 1 + . ID=CGI_10019751; scaffold1018 GLEAN mRNA 6612 8417 0.937262 - . ID=CGI_10019752; scaffold1018 GLEAN promoter 8418 9417 0.937262 - . ID=CGI_10019752; scaffold1018 TRF Tandem_Repeat 22379 22436 73 + . . scaffold1018 TRF Tandem_Repeat 22379 22436 73 + . . scaffold1018 TRF Tandem_Repeat 22538 22583 55 + . . scaffold1018 TRF Tandem_Repeat 37008 37040 52 + . . scaffold1018 TRF Tandem_Repeat 37008 37050 50 + . . scaffold1018 TRF Tandem_Repeat 37167 37218 61 + . . scaffold1018 TRF Tandem_Repeat 37167 37218 61 + . . scaffold1018 TRF Tandem_Repeat 37321 37372 72 + . . scaffold1018 TRF Tandem_Repeat 37322 37372 68 + . . scaffold1018 TRF Tandem_Repeat 69864 69889 52 + . . scaffold1018 WUBlastX LINE_RTE-X 76826 78193 293 - . . scaffold1018 WUBlastX LINE_RTE-X 78205 78294 22 - . . scaffold1018 TRF Tandem_Repeat 78297 78482 207 + . . scaffold1018 TRF Tandem_Repeat 78297 78482 216 + . . scaffold1018 WUBlastX LINE_RTE-X 78511 78795 43 - . . scaffold1018 TRF Tandem_Repeat 81075 81100 52 + . . scaffold1018 WUBlastX LINE_L1-Tx1 83054 86794 1520 - . . scaffold1018 WUBlastX LINE_L1-Tx1 86851 87903 387 - . . scaffold1018 WUBlastX LINE_L1 87124 87882 413 - . . scaffold1018 TRF Tandem_Repeat 90670 90721 59 + . . scaffold1018 TRF Tandem_Repeat 90671 90716 65 + . . scaffold1018 TRF Tandem_Repeat 94081 94997 1116 + . . scaffold1018 TRF Tandem_Repeat 105617 105842 359 + . . scaffold1018 WUBlastX LINE_RTE-X 107747 108034 61 - . . scaffold1018 WUBlastX LINE_RTE-X 107759 108187 29 - . . scaffold1018 WUBlastX LINE_RTE-X 107792 108034 82 - . . scaffold1018 TRF Tandem_Repeat 111554 111829 117 + . . scaffold1018 TRF Tandem_Repeat 111554 111744 106 + . . scaffold1018 TRF Tandem_Repeat 111556 111736 218 + . . scaffold1018 TRF Tandem_Repeat 111569 111633 58 + . . scaffold1018 TRF Tandem_Repeat 111659 111831 123 + . . scaffold1018 TRF Tandem_Repeat 111770 111831 97 + . . scaffold1018 GLEAN promoter 114950 115949 0.999957 + . ID=CGI_10019754; scaffold1018 TRF Tandem_Repeat 115498 115608 66 + . . scaffold1018 GLEAN mRNA 115950 119268 0.999957 + . ID=CGI_10019754; scaffold1018 GLEAN promoter 125883 126882 0.999957 + . ID=CGI_10019755; scaffold1018 GLEAN mRNA 126883 128200 0.999957 + . ID=CGI_10019755; scaffold1018 GLEAN mRNA 130016 148462 0.998491 - . ID=CGI_10019756; scaffold1018 TRF Tandem_Repeat 142158 142317 320 + . . scaffold1018 TRF Tandem_Repeat 144385 144970 839 + . . scaffold1018 TRF Tandem_Repeat 144385 144956 744 + . . scaffold1018 GLEAN promoter 148409 149408 0.997518 + . ID=CGI_10019757; scaffold1018 GLEAN promoter 148463 149462 0.998491 - . ID=CGI_10019756; scaffold1018 GLEAN mRNA 149409 158787 0.997518 + . ID=CGI_10019757; scaffold1018 TRF Tandem_Repeat 154182 154709 873 + . . scaffold1018 TRF Tandem_Repeat 157741 157986 219 + . . scaffold1018 TRF Tandem_Repeat 164527 165772 1701 + . . scaffold1018 GLEAN promoter 165653 166652 1 + . ID=CGI_10019758; scaffold1018 WUBlastX DNA_TcMar-Tc1 165822 165983 93 + . . scaffold1018 WUBlastX DNA_TcMar-Tc1 165983 166180 94 + . . scaffold1018 GLEAN mRNA 166653 166814 1 + . ID=CGI_10019758; scaffold1018 TRF Tandem_Repeat 167097 167315 178 + . . scaffold1018 GLEAN mRNA 168855 189199 0.999538 - . ID=CGI_10019759; scaffold1018 TRF Tandem_Repeat 177688 177747 52 + . . scaffold1018 GLEAN promoter 188709 189708 1 + . ID=CGI_10019760; scaffold1018 GLEAN promoter 189200 190199 0.999538 - . ID=CGI_10019759; scaffold1018 GLEAN mRNA 189709 195388 1 + . ID=CGI_10019760; scaffold1018 TRF Tandem_Repeat 191919 191956 60 + . . scaffold1018 TRF Tandem_Repeat 205951 206006 112 + . . scaffold1018 WUBlastX LTR_Ngaro 209472 209723 53 + . . scaffold1018 WUBlastX LTR_Ngaro 209544 209723 60 + . . scaffold1018 TRF Tandem_Repeat 211030 211064 70 + . . scaffold1018 TRF Tandem_Repeat 211261 211431 173 + . . scaffold1018 TRF Tandem_Repeat 213926 214001 152 + . . scaffold1018 WUBlastX LTR_Ngaro 220733 220870 63 - . . scaffold1018 WUBlastX LTR_Ngaro 220760 220870 73 - . . scaffold1018 WUBlastX LTR_Ngaro 221320 221538 88 - . . scaffold1018 WUBlastX LTR_Ngaro 221320 221580 49 - . . scaffold1018 WUBlastX LTR_Ngaro 221638 223239 1016 - . . scaffold1018 WUBlastX LTR_Ngaro 223418 223747 28 - . . scaffold1018 WUBlastX LTR_Ngaro 223469 223744 80 - . . scaffold1018 WUBlastX LTR_Ngaro 223520 223771 80 - . . scaffold1018 WUBlastX LTR_Gypsy 231287 231964 45 + . . scaffold1018 WUBlastX LTR_Gypsy-Cigr 231491 231967 137 + . . scaffold1018 WUBlastX LTR_Gypsy 231527 232267 94 + . . scaffold1018 WUBlastX LTR_Gypsy 232398 232727 52 + . . scaffold1018 WUBlastX LTR_Gypsy 232458 233870 660 + . . scaffold1018 WUBlastX LTR_Gypsy-Cigr 233010 235121 937 + . . scaffold1018 WUBlastX LTR_Gypsy 234738 235214 91 + . . scaffold1018 WUBlastX LTR_Gypsy 235329 236318 313 + . . scaffold1018 WUBlastX LTR_Gypsy 235485 236510 365 + . . scaffold1018 WUBlastX LTR_Gypsy 235488 236339 620 + . . scaffold1018 GLEAN promoter 236001 237000 0.965819 + . ID=CGI_10019761; scaffold1018 GLEAN mRNA 237001 237843 0.965819 + . ID=CGI_10019761; scaffold1018 TRF Tandem_Repeat 237454 237547 152 + . . scaffold1018 GLEAN promoter 241940 242939 0.606365 + . ID=CGI_10019762; scaffold1018 TRF Tandem_Repeat 242148 242194 94 + . . scaffold1018 GLEAN mRNA 242940 268764 0.606365 + . ID=CGI_10019762; scaffold1018 WUBlastX LINE_RTE-X 262406 262579 58 - . . scaffold1018 WUBlastX LINE_RTE-X 262409 262504 62 - . . scaffold1018 WUBlastX LINE_RTE-X 262539 262754 23 - . . scaffold1018 WUBlastX LINE_RTE-X 262557 262676 56 - . . scaffold1018 TRF Tandem_Repeat 263308 263348 82 + . . scaffold1018 TRF Tandem_Repeat 269819 269844 52 + . . scaffold1018 TRF Tandem_Repeat 275972 276022 102 + . . scaffold1018 GLEAN mRNA 276963 283808 0.999413 - . ID=CGI_10019763; scaffold1018 GLEAN promoter 283809 284808 0.999413 - . ID=CGI_10019763; scaffold1018 TRF Tandem_Repeat 289338 289428 78 + . . scaffold1018 GLEAN promoter 290579 291578 0.999835 + . ID=CGI_10019764; scaffold1018 GLEAN mRNA 291579 292553 0.999835 + . ID=CGI_10019764; scaffold1018 GLEAN mRNA 295429 310320 0.999312 - . ID=CGI_10019765; scaffold1018 GLEAN promoter 310321 311320 0.999312 - . ID=CGI_10019765; scaffold1018 GLEAN mRNA 310333 332681 0.998378 - . ID=CGI_10019766; scaffold1018 TRF Tandem_Repeat 310916 310962 94 + . . scaffold1018 WUBlastX DNA_MuDR 332526 333356 47 - . . scaffold1018 GLEAN promoter 332682 333681 0.998378 - . ID=CGI_10019766; scaffold1018 TRF Tandem_Repeat 334275 334618 521 + . . scaffold1018 WUBlastX LINE_RTE-X 336940 337059 29 + . . scaffold1018 WUBlastX LINE_RTE-X 336976 337026 31 + . . scaffold1018 WUBlastX LINE_RTE-X 337021 337182 38 + . . scaffold1018 WUBlastX LINE_RTE-X 337156 337461 75 + . . scaffold1018 WUBlastX LINE_RTE-X 337225 337461 111 + . . scaffold1018 WUBlastX LINE_RTE-X 337288 337545 87 + . . scaffold1018 TRF Tandem_Repeat 353848 354158 384 + . . scaffold1018 GLEAN promoter 353862 354861 0.999946 + . ID=CGI_10019768; scaffold1018 GLEAN mRNA 354862 365728 0.999946 + . ID=CGI_10019768; scaffold1018 GLEAN promoter 368109 369108 1 + . ID=CGI_10019769; scaffold1018 GLEAN mRNA 369109 380638 1 + . ID=CGI_10019769; scaffold1018 TRF Tandem_Repeat 380794 380818 50 + . . scaffold1018 TRF Tandem_Repeat 381825 382090 374 + . . scaffold1018 WUBlastX DNA_Crypton 387259 387768 71 + . . scaffold1018 WUBlastX DNA_Crypton 387355 388131 226 + . . scaffold1018 WUBlastX LTR_Gypsy 392202 393152 140 - . . scaffold1018 WUBlastX LTR_Gypsy 392357 392995 154 - . . scaffold1018 WUBlastX LTR_Gypsy 392471 393205 171 - . . scaffold1018 WUBlastX LTR_Gypsy 392471 392995 172 - . . scaffold1018 WUBlastX LTR_Gypsy 392744 393028 178 - . . scaffold1018 WUBlastX LTR_Gypsy 393167 393478 125 - . . scaffold1018 WUBlastX LTR_Gypsy 393498 393902 170 - . . scaffold1018 WUBlastX LTR_Gypsy 393570 393947 312 - . . scaffold1018 WUBlastX LTR_Gypsy 393907 394185 149 - . . scaffold1018 WUBlastX LTR_Gypsy 394051 394314 32 - . . scaffold1018 WUBlastX LTR_Gypsy 394234 394341 74 - . . scaffold1018 WUBlastX LTR_Caulimoviru 394246 394425 50 - . . scaffold1018 WUBlastX LTR_Gypsy 394252 394341 92 - . . scaffold1018 WUBlastX LTR_Gypsy 394352 394447 28 - . . scaffold1018 WUBlastX DNA_Harbinger 394591 394860 77 + . . scaffold1018 TRF Tandem_Repeat 405377 405449 67 + . . scaffold1018 GLEAN mRNA 427529 428035 0.544683 - . ID=CGI_10019770; scaffold1018 GLEAN promoter 428036 429035 0.544683 - . ID=CGI_10019770; scaffold1018 GLEAN promoter 429372 430371 0.593314 + . ID=CGI_10019771; scaffold1018 GLEAN mRNA 430372 435233 0.593314 + . ID=CGI_10019771; scaffold1018 GLEAN promoter 434304 435303 0.992449 + . ID=CGI_10019772; scaffold1018 GLEAN mRNA 435304 447286 0.992449 + . ID=CGI_10019772; scaffold1018 GLEAN mRNA 435432 442583 0.542495 - . ID=CGI_10019773; scaffold1018 WUBlastX DNA_En-Spm 439001 439888 296 + . . scaffold1018 WUBlastX DNA_En-Spm 439878 440483 96 + . . scaffold1018 WUBlastX DNA_En-Spm 439878 440300 126 + . . scaffold1018 TRF Tandem_Repeat 441697 441868 263 + . . scaffold1018 WUBlastX LTR_Ngaro 442052 442276 118 + . . scaffold1018 WUBlastX LTR_Ngaro 442052 442462 75 + . . scaffold1018 GLEAN promoter 442584 443583 0.542495 - . ID=CGI_10019773; scaffold1018 TRF Tandem_Repeat 443086 443117 55 + . . scaffold1018 GLEAN mRNA 443421 443585 0.481166 - . ID=CGI_10019774; scaffold1018 GLEAN promoter 443586 444585 0.481166 - . ID=CGI_10019774; scaffold1018 WUBlastX DNA_hAT-Tip100 443833 444126 83 + . . scaffold1018 WUBlastX DNA_hAT-Tip100 445238 445474 109 + . . scaffold1018 TRF Tandem_Repeat 445683 446478 1161 + . . scaffold1018 WUBlastX LTR_Pao 448639 449211 43 + . . scaffold1018 WUBlastX LTR_Pao 448828 454497 3058 + . . scaffold1018 WUBlastX DNA_PiggyBac 459815 460072 38 + . . scaffold1018 WUBlastX DNA_PiggyBac 460003 460416 55 + . . scaffold1018 WUBlastX DNA_PiggyBac 460066 460389 167 + . . scaffold1018 GLEAN promoter 460140 461139 0.737163 + . ID=CGI_10019775; scaffold1018 WUBlastX DNA_PiggyBac 460162 460404 183 + . . scaffold1018 WUBlastX DNA_PiggyBac 460401 460979 227 + . . scaffold1018 GLEAN mRNA 461140 463319 0.737163 + . ID=CGI_10019775; scaffold1018 WUBlastX DNA_Maverick 465276 465614 54 + . . scaffold1018 WUBlastX DNA_Maverick 465667 466380 134 + . . scaffold1018 WUBlastX DNA_Maverick 466772 467845 489 + . . scaffold1018 WUBlastX LTR_Gypsy 467699 467899 59 + . . scaffold1018 WUBlastX DNA_Maverick 468789 470021 552 + . . scaffold1018 WUBlastX DNA_Maverick 470033 470479 161 + . . scaffold1018 GLEAN promoter 471025 472024 0.691537 + . ID=CGI_10019776; scaffold1018 GLEAN mRNA 472025 473374 0.691537 + . ID=CGI_10019776; scaffold1018 GLEAN mRNA 475703 476164 0.999954 - . ID=CGI_10019777; scaffold1018 GLEAN promoter 476165 477164 0.999954 - . ID=CGI_10019777; scaffold1018 TRF Tandem_Repeat 476894 476996 59 + . . scaffold1018 TRF Tandem_Repeat 476936 476986 57 + . . scaffold1018 TRF Tandem_Repeat 489240 489279 71 + . . scaffold1018 TRF Tandem_Repeat 489310 490768 2157 + . . scaffold1018 WUBlastX DNA_Maverick 492641 493183 97 - . . scaffold1018 WUBlastX DNA_Maverick 492953 493831 44 - . . scaffold1018 WUBlastX DNA_Maverick 493180 493443 95 - . . scaffold1018 WUBlastX DNA_Maverick 493228 493434 135 - . . scaffold1018 GLEAN mRNA 495255 495425 0.776758 - . ID=CGI_10019778; scaffold1018 GLEAN promoter 495426 496425 0.776758 - . ID=CGI_10019778; scaffold1018 WUBlastX LTR_Gypsy 505595 506350 137 - . . scaffold1018 WUBlastX LTR_Ngaro 509068 509874 35 - . . scaffold1018 WUBlastX LTR_Ngaro 509125 509724 86 - . . scaffold1018 WUBlastX LTR_DIRS 518998 519279 28 + . . scaffold1018 WUBlastX LTR_Gypsy 519392 519739 53 + . . scaffold1018 WUBlastX LTR_Gypsy 519599 519736 67 + . . scaffold1018 TRF Tandem_Repeat 523854 523889 72 + . . scaffold1018 TRF Tandem_Repeat 524229 524426 126 + . . scaffold1018 GLEAN promoter 546902 547901 0.39343 + . ID=CGI_10019779; scaffold1018 GLEAN mRNA 547902 567181 0.39343 + . ID=CGI_10019779; scaffold1018 WUBlastX LTR_Gypsy 550483 550596 33 - . . scaffold1018 WUBlastX LTR_Gypsy 551251 552066 112 - . . scaffold1018 WUBlastX LTR_Gypsy 551479 552228 279 - . . scaffold1018 WUBlastX LTR_Gypsy 551500 552525 250 - . . scaffold1018 WUBlastX LTR_Gypsy 552694 552906 30 - . . scaffold1018 TRF Tandem_Repeat 559463 559487 50 + . . scaffold1018 GLEAN mRNA 568631 598731 0.537907 - . ID=CGI_10019780; scaffold1018 WUBlastX LTR_Pao 571085 573070 216 + . . scaffold1018 WUBlastX LTR_Pao 573031 577050 3264 + . . scaffold1018 TRF Tandem_Repeat 577984 578029 56 + . . scaffold1018 TRF Tandem_Repeat 591839 592170 461 + . . scaffold1018 GLEAN promoter 598732 599731 0.537907 - . ID=CGI_10019780; scaffold1018 GLEAN mRNA 602191 602689 1 - . ID=CGI_10019781; scaffold1018 GLEAN promoter 602690 603689 1 - . ID=CGI_10019781; scaffold102 TRF Tandem_Repeat 56 131 145 + . . scaffold102 GLEAN promoter 4177 5176 0.649524 + . ID=CGI_10028418; scaffold102 GLEAN mRNA 5177 6142 0.649524 + . ID=CGI_10028418; scaffold102 GLEAN mRNA 11171 11590 1 - . ID=CGI_10028419; scaffold102 GLEAN promoter 11591 12590 1 - . ID=CGI_10028419; scaffold102 TRF Tandem_Repeat 12334 12359 52 + . . scaffold102 TRF Tandem_Repeat 19457 19505 71 + . . scaffold102 TRF Tandem_Repeat 19674 22126 2656 + . . scaffold102 TRF Tandem_Repeat 19681 22126 2609 + . . scaffold102 TRF Tandem_Repeat 19743 22126 2720 + . . scaffold102 TRF Tandem_Repeat 41191 41233 86 + . . scaffold102 WUBlastX LINE_Penelope 42791 42970 65 - . . scaffold102 WUBlastX LINE_Penelope 43123 43608 20 - . . scaffold102 TRF Tandem_Repeat 45413 45454 84 + . . scaffold102 WUBlastX LTR_Pao 71807 72508 39 + . . scaffold102 GLEAN mRNA 91298 106049 0.998084 - . ID=CGI_10028420; scaffold102 GLEAN promoter 105910 106909 0.997949 + . ID=CGI_10028421; scaffold102 GLEAN promoter 106050 107049 0.998084 - . ID=CGI_10028420; scaffold102 GLEAN mRNA 106910 127626 0.997949 + . ID=CGI_10028421; scaffold102 TRF Tandem_Repeat 112009 112052 88 + . . scaffold102 TRF Tandem_Repeat 119809 120024 317 + . . scaffold102 GLEAN mRNA 121480 122895 0.991132 - . ID=CGI_10028422; scaffold102 GLEAN promoter 122896 123895 0.991132 - . ID=CGI_10028422; scaffold102 TRF Tandem_Repeat 124328 124438 160 + . . scaffold102 WUBlastX LTR_DIRS 128923 129987 244 + . . scaffold102 WUBlastX LTR_DIRS 129208 130668 172 + . . scaffold102 TRF Tandem_Repeat 135030 135256 170 + . . scaffold102 TRF Tandem_Repeat 135055 135268 141 + . . scaffold102 GLEAN promoter 136102 137101 1 + . ID=CGI_10028423; scaffold102 GLEAN mRNA 137102 137320 1 + . ID=CGI_10028423; scaffold102 TRF Tandem_Repeat 137372 137412 82 + . . scaffold102 WUBlastX LINE_RTE-BovB 140491 140580 51 + . . scaffold102 WUBlastX LINE_RTE-BovB 140574 141344 259 + . . scaffold102 WUBlastX LINE_RTE-BovB 141229 141570 91 + . . scaffold102 GLEAN mRNA 144513 145607 0.777578 - . ID=CGI_10028424; scaffold102 GLEAN promoter 145608 146607 0.777578 - . ID=CGI_10028424; scaffold102 WUBlastX LINE_Penelope 149319 149396 57 + . . scaffold102 WUBlastX LINE_Penelope 149375 149638 81 + . . scaffold102 TRF Tandem_Repeat 149719 149743 50 + . . scaffold102 TRF Tandem_Repeat 151831 151989 275 + . . scaffold102 WUBlastX LINE_Penelope 153788 153937 34 + . . scaffold102 WUBlastX LINE_Penelope 153952 154158 22 + . . scaffold102 WUBlastX LINE_Penelope 153990 154232 53 + . . scaffold102 WUBlastX LINE_Penelope 154146 154283 32 + . . scaffold102 WUBlastX LINE_Penelope 154290 154418 56 + . . scaffold102 TRF Tandem_Repeat 154516 154552 56 + . . scaffold102 GLEAN mRNA 179234 183430 0.548229 - . ID=CGI_10028425; scaffold102 TRF Tandem_Repeat 180737 180774 62 + . . scaffold102 GLEAN promoter 183431 184430 0.548229 - . ID=CGI_10028425; scaffold102 GLEAN mRNA 183780 185276 0.816735 - . ID=CGI_10028426; scaffold102 GLEAN promoter 185277 186276 0.816735 - . ID=CGI_10028426; scaffold102 TRF Tandem_Repeat 187083 188438 1978 + . . scaffold102 TRF Tandem_Repeat 187083 188438 1841 + . . scaffold102 GLEAN promoter 187651 188650 0.999993 + . ID=CGI_10028427; scaffold102 GLEAN mRNA 188651 189133 0.999993 + . ID=CGI_10028427; scaffold102 WUBlastX LINE_L2 191550 191978 34 - . . scaffold102 WUBlastX LINE_CR1-L2 191758 191811 43 - . . scaffold102 WUBlastX LINE_CR1 192149 192220 29 - . . scaffold102 TRF Tandem_Repeat 230030 230096 127 + . . scaffold102 TRF Tandem_Repeat 239563 239613 102 + . . scaffold102 GLEAN promoter 241417 242416 0.999993 + . ID=CGI_10028428; scaffold102 WUBlastX DNA_Kolobok-Hyd 241572 241784 26 + . . scaffold102 GLEAN mRNA 242417 244408 0.999993 + . ID=CGI_10028428; scaffold102 TRF Tandem_Repeat 242842 242897 112 + . . scaffold102 GLEAN mRNA 246113 251698 0.988828 - . ID=CGI_10028429; scaffold102 GLEAN promoter 251699 252698 0.988828 - . ID=CGI_10028429; scaffold102 GLEAN mRNA 251987 267295 0.910885 - . ID=CGI_10028430; scaffold102 WUBlastX DNA_TcMar-Fot1 257590 257889 43 - . . scaffold102 WUBlastX DNA_TcMar-Tc2 257608 257847 47 - . . scaffold102 WUBlastX DNA_TcMar-Tc2 257623 257802 48 - . . scaffold102 WUBlastX DNA_TcMar-Tc2 258065 258676 77 - . . scaffold102 GLEAN promoter 267296 268295 0.910885 - . ID=CGI_10028430; scaffold102 GLEAN mRNA 274200 301612 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 276131 276386 105 + . . scaffold102 TRF Tandem_Repeat 280345 280564 246 + . . scaffold102 TRF Tandem_Repeat 280346 280533 94 + . . scaffold102 TRF Tandem_Repeat 280346 280564 83 + . . scaffold102 TRF Tandem_Repeat 280346 280564 58 + . . scaffold102 TRF Tandem_Repeat 281124 281185 72 + . . scaffold102 TRF Tandem_Repeat 281124 281221 63 + . . scaffold102 TRF Tandem_Repeat 281893 281940 51 + . . scaffold102 TRF Tandem_Repeat 286437 286570 110 + . . scaffold102 TRF Tandem_Repeat 300250 300410 97 + . . scaffold102 GLEAN promoter 301613 302612 0.606671 - . ID=CGI_10028431; scaffold102 TRF Tandem_Repeat 302576 302756 156 + . . scaffold102 TRF Tandem_Repeat 302843 303063 194 + . . scaffold102 TRF Tandem_Repeat 302944 303626 747 + . . scaffold102 GLEAN mRNA 305344 309445 0.651166 - . ID=CGI_10028432; scaffold102 TRF Tandem_Repeat 307554 307596 59 + . . scaffold102 TRF Tandem_Repeat 308196 308538 332 + . . scaffold102 GLEAN promoter 309446 310445 0.651166 - . ID=CGI_10028432; scaffold102 TRF Tandem_Repeat 312926 312996 63 + . . scaffold102 TRF Tandem_Repeat 313524 313570 58 + . . scaffold102 TRF Tandem_Repeat 317434 319233 2986 + . . scaffold102 TRF Tandem_Repeat 317434 319233 2781 + . . scaffold102 TRF Tandem_Repeat 323357 324168 946 + . . scaffold102 TRF Tandem_Repeat 327865 327905 82 + . . scaffold102 TRF Tandem_Repeat 340601 341449 770 + . . scaffold102 TRF Tandem_Repeat 341450 343892 2467 + . . scaffold102 TRF Tandem_Repeat 347492 347534 86 + . . scaffold102 TRF Tandem_Repeat 353811 354778 1039 + . . scaffold102 TRF Tandem_Repeat 361402 361461 120 + . . scaffold102 TRF Tandem_Repeat 367244 367495 307 + . . scaffold102 GLEAN mRNA 367591 368589 0.999999 - . ID=CGI_10028433; scaffold102 WUBlastX LINE_RTE-X 367654 368661 227 - . . scaffold102 GLEAN promoter 368228 369227 0.835259 + . ID=CGI_10028434; scaffold102 GLEAN promoter 368590 369589 0.999999 - . ID=CGI_10028433; scaffold102 GLEAN mRNA 369228 382639 0.835259 + . ID=CGI_10028434; scaffold102 TRF Tandem_Repeat 382630 382765 114 + . . scaffold102 TRF Tandem_Repeat 383492 383530 60 + . . scaffold102 GLEAN mRNA 385396 389357 1 - . ID=CGI_10028435; scaffold102 TRF Tandem_Repeat 388766 389002 287 + . . scaffold102 GLEAN promoter 389358 390357 1 - . ID=CGI_10028435; scaffold102 GLEAN promoter 389563 390562 1 + . ID=CGI_10028436; scaffold102 GLEAN mRNA 390563 399324 1 + . ID=CGI_10028436; scaffold102 TRF Tandem_Repeat 412435 412478 88 + . . scaffold102 GLEAN promoter 432923 433922 0.978163 + . ID=CGI_10028437; scaffold102 GLEAN mRNA 433923 467506 0.978163 + . ID=CGI_10028437; scaffold102 TRF Tandem_Repeat 448571 448619 98 + . . scaffold102 TRF Tandem_Repeat 471465 471514 66 + . . scaffold102 TRF Tandem_Repeat 477561 478249 905 + . . scaffold102 WUBlastX LTR_Pao 481657 481788 50 - . . scaffold102 WUBlastX DNA_NOF? 481705 481818 46 - . . scaffold102 WUBlastX LTR_Gypsy 481810 483129 291 - . . scaffold102 WUBlastX LTR_Gypsy 482071 483375 763 - . . scaffold102 GLEAN promoter 487913 488912 0.999999 + . ID=CGI_10028438; scaffold102 TRF Tandem_Repeat 488494 488536 50 + . . scaffold102 GLEAN mRNA 488913 500203 0.999999 + . ID=CGI_10028438; scaffold102 GLEAN mRNA 501859 537803 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 503466 504240 891 + . . scaffold102 TRF Tandem_Repeat 504271 504310 71 + . . scaffold102 TRF Tandem_Repeat 511588 511718 190 + . . scaffold102 TRF Tandem_Repeat 512839 512865 54 + . . scaffold102 TRF Tandem_Repeat 517816 518280 434 + . . scaffold102 TRF Tandem_Repeat 517819 517986 178 + . . scaffold102 TRF Tandem_Repeat 517819 518287 410 + . . scaffold102 TRF Tandem_Repeat 517994 518287 260 + . . scaffold102 TRF Tandem_Repeat 522611 522640 60 + . . scaffold102 TRF Tandem_Repeat 524517 524600 96 + . . scaffold102 TRF Tandem_Repeat 528646 528685 64 + . . scaffold102 TRF Tandem_Repeat 533438 533463 52 + . . scaffold102 GLEAN promoter 537804 538803 0.999676 - . ID=CGI_10028439; scaffold102 TRF Tandem_Repeat 547349 547465 74 + . . scaffold102 TRF Tandem_Repeat 547350 547469 129 + . . scaffold102 TRF Tandem_Repeat 547357 547465 82 + . . scaffold102 GLEAN promoter 554623 555622 1 + . ID=CGI_10028440; scaffold102 GLEAN mRNA 555623 563341 1 + . ID=CGI_10028440; scaffold102 TRF Tandem_Repeat 560131 560337 274 + . . scaffold102 GLEAN mRNA 566915 572903 0.748453 - . ID=CGI_10028441; scaffold102 GLEAN promoter 572904 573903 0.748453 - . ID=CGI_10028441; scaffold102 GLEAN mRNA 575083 580558 0.988534 - . ID=CGI_10028442; scaffold102 GLEAN promoter 580559 581558 0.988534 - . ID=CGI_10028442; scaffold102 TRF Tandem_Repeat 582897 582925 58 + . . scaffold102 TRF Tandem_Repeat 597182 597214 57 + . . scaffold102 TRF Tandem_Repeat 602514 602578 60 + . . scaffold102 TRF Tandem_Repeat 602524 602598 91 + . . scaffold102 TRF Tandem_Repeat 619166 619208 61 + . . scaffold102 TRF Tandem_Repeat 619394 619490 108 + . . scaffold102 TRF Tandem_Repeat 619665 619708 70 + . . scaffold102 GLEAN promoter 619685 620684 0.999968 + . ID=CGI_10028443; scaffold102 GLEAN mRNA 620685 629644 0.999968 + . ID=CGI_10028443; scaffold102 TRF Tandem_Repeat 622844 622984 117 + . . scaffold102 TRF Tandem_Repeat 623556 623584 58 + . . scaffold102 TRF Tandem_Repeat 636037 636124 59 + . . scaffold102 TRF Tandem_Repeat 636042 636109 92 + . . scaffold102 TRF Tandem_Repeat 636056 636114 63 + . . scaffold102 WUBlastX LTR_Gypsy 638544 639431 125 + . . scaffold102 WUBlastX LTR_Gypsy 638775 640640 349 + . . scaffold102 WUBlastX LTR_Gypsy 640266 642233 741 + . . scaffold102 WUBlastX LTR_Gypsy 640638 642233 1094 + . . scaffold102 WUBlastX LTR_Gypsy 642367 642507 21 + . . scaffold102 WUBlastX LTR_Gypsy 642403 642495 22 + . . scaffold102 GLEAN promoter 642973 643972 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 643632 643880 21 + . . scaffold102 WUBlastX LTR_Ngaro 643934 644050 57 + . . scaffold102 WUBlastX LTR_Ngaro 643949 644107 48 + . . scaffold102 GLEAN mRNA 643973 666734 0.499984 + . ID=CGI_10028445; scaffold102 WUBlastX LTR_Ngaro 644393 644446 24 + . . scaffold102 WUBlastX LTR_Ngaro 644449 644808 212 + . . scaffold102 WUBlastX LTR_Ngaro 644778 645155 94 + . . scaffold102 TRF Tandem_Repeat 653090 653115 52 + . . scaffold102 TRF Tandem_Repeat 661017 661070 72 + . . scaffold102 TRF Tandem_Repeat 661017 661120 91 + . . scaffold102 TRF Tandem_Repeat 661056 661120 103 + . . scaffold102 GLEAN promoter 673182 674181 0.999999 + . ID=CGI_10028446; scaffold102 WUBlastX LTR_Gypsy 673288 674454 646 + . . scaffold102 GLEAN mRNA 674182 674616 0.999999 + . ID=CGI_10028446; scaffold102 TRF Tandem_Repeat 674479 674591 52 + . . scaffold102 TRF Tandem_Repeat 675217 675267 102 + . . scaffold102 TRF Tandem_Repeat 676300 676345 92 + . . scaffold102 TRF Tandem_Repeat 677472 677532 50 + . . scaffold102 WUBlastX LTR_Gypsy 677555 677656 31 + . . scaffold102 WUBlastX LTR_Gypsy 677576 677701 62 + . . scaffold102 WUBlastX LTR_Gypsy 677652 678026 400 + . . scaffold102 WUBlastX LTR_Gypsy 677992 679803 1709 + . . scaffold102 WUBlastX LTR_Gypsy 679809 680264 265 + . . scaffold102 WUBlastX LTR_Copia 680184 680417 24 + . . scaffold102 TRF Tandem_Repeat 681007 681073 89 + . . scaffold102 TRF Tandem_Repeat 681568 681599 64 + . . scaffold102 TRF Tandem_Repeat 699663 699707 90 + . . scaffold102 GLEAN promoter 700339 701338 0.984575 + . ID=CGI_10028447; scaffold102 TRF Tandem_Repeat 700653 700773 80 + . . scaffold102 GLEAN mRNA 701339 715746 0.984575 + . ID=CGI_10028447; scaffold102 WUBlastX LTR_Pao 713371 714630 130 + . . scaffold102 WUBlastX LTR_Pao 714623 714823 72 + . . scaffold102 TRF Tandem_Repeat 718337 718534 231 + . . scaffold102 TRF Tandem_Repeat 718337 718535 89 + . . scaffold102 TRF Tandem_Repeat 718379 718555 189 + . . scaffold102 WUBlastX LTR_Pao 727416 727721 202 - . . scaffold102 WUBlastX LTR_Pao 727434 727808 121 - . . scaffold102 WUBlastX LTR_Pao 727766 727912 75 - . . scaffold102 WUBlastX LTR_Pao 727908 728777 535 - . . scaffold102 WUBlastX LTR_Pao 728813 729043 33 - . . scaffold102 WUBlastX LTR_Pao 728884 729744 575 - . . scaffold102 WUBlastX LTR_Pao 728887 730047 490 - . . scaffold102 WUBlastX LTR_Pao 730022 730552 220 - . . scaffold102 WUBlastX LTR_Pao 730283 730885 101 - . . scaffold102 WUBlastX LTR_Pao 730693 731823 172 - . . scaffold102 WUBlastX LTR_Pao 730996 731823 207 - . . scaffold102 WUBlastX LTR_Pao 732112 732324 39 - . . scaffold102 WUBlastX LTR_Gypsy 734420 734527 68 + . . scaffold102 WUBlastX LTR_Gypsy 734526 735200 283 + . . scaffold102 WUBlastX LTR_Gypsy 735362 735553 59 + . . scaffold102 WUBlastX LTR_Gypsy 735558 735737 51 + . . scaffold102 WUBlastX LTR_Gypsy 735625 736062 157 + . . scaffold102 WUBlastX LTR_Gypsy 735724 736065 295 + . . scaffold102 WUBlastX LTR_Gypsy 736059 736286 81 + . . scaffold102 WUBlastX LTR_Gypsy 736083 736340 75 + . . scaffold102 WUBlastX LTR_Gypsy 736083 736259 109 + . . scaffold102 WUBlastX LTR_Gypsy 736089 736226 135 + . . scaffold102 WUBlastX LTR_Gypsy 736095 736409 27 + . . scaffold102 WUBlastX LTR_Gypsy 736785 736814 23 + . . scaffold102 WUBlastX LTR_Gypsy 737070 737375 77 + . . scaffold102 WUBlastX LTR_Gypsy 737145 737537 103 + . . scaffold102 WUBlastX LTR_Gypsy 737160 737375 144 + . . scaffold102 WUBlastX LTR_Gypsy 737691 738485 144 + . . scaffold102 WUBlastX LTR_Gypsy 737850 738800 721 + . . scaffold102 WUBlastX LTR_Gypsy 738775 739473 619 + . . scaffold102 WUBlastX LTR_Gypsy 739460 739741 111 + . . scaffold102 TRF Tandem_Repeat 746908 746943 54 + . . scaffold102 WUBlastX DNA_TcMar-Fot1 754134 754370 71 - . . scaffold102 WUBlastX DNA_TcMar-Fot1 754173 754415 56 - . . scaffold102 WUBlastX DNA_TcMar-Fot1 754173 754373 87 - . . scaffold102 WUBlastX DNA_TcMar-Fot1 754366 754449 26 - . . scaffold102 WUBlastX DNA_TcMar-Fot1 754372 754506 20 - . . scaffold102 WUBlastX DNA_TcMar-Fot1 754615 754935 27 - . . scaffold102 WUBlastX DNA_TcMar-Fot1 754738 754935 32 - . . scaffold102 WUBlastX DNA_TcMar-Fot1 754777 754935 52 - . . scaffold102 TRF Tandem_Repeat 765210 765661 416 + . . scaffold102 TRF Tandem_Repeat 765274 765837 176 + . . scaffold102 TRF Tandem_Repeat 765298 765967 174 + . . scaffold102 TRF Tandem_Repeat 765616 766013 431 + . . scaffold102 WUBlastX DNA_TcMar-Tc1 778385 778807 62 - . . scaffold102 WUBlastX DNA_TcMar-Tc1 778388 778672 81 - . . scaffold102 WUBlastX DNA_TcMar-Tc1 778397 778633 94 - . . scaffold102 GLEAN mRNA 787934 790781 0.412925 - . ID=CGI_10028448; scaffold102 GLEAN promoter 790782 791781 0.412925 - . ID=CGI_10028448; scaffold102 TRF Tandem_Repeat 790969 791211 106 + . . scaffold102 TRF Tandem_Repeat 792294 792343 100 + . . scaffold102 WUBlastX LINE_RTE-X 794328 794591 147 + . . scaffold102 WUBlastX LINE_RTE-X 794394 794648 103 + . . scaffold102 WUBlastX LINE_RTE-X 794647 795432 293 + . . scaffold102 WUBlastX LINE_RTE-X 795067 795525 64 + . . scaffold102 WUBlastX LINE_RTE-X 795525 795803 42 + . . scaffold102 WUBlastX LINE_RTE-X 795525 795731 47 + . . scaffold102 GLEAN mRNA 805354 820158 1 - . ID=CGI_10028449; scaffold102 TRF Tandem_Repeat 810023 810047 50 + . . scaffold102 TRF Tandem_Repeat 814735 814781 94 + . . scaffold102 TRF Tandem_Repeat 815596 815702 169 + . . scaffold102 TRF Tandem_Repeat 818565 818607 54 + . . scaffold102 GLEAN promoter 820159 821158 1 - . ID=CGI_10028449; scaffold102 GLEAN promoter 820901 821900 0.998504 + . ID=CGI_10028450; scaffold102 GLEAN mRNA 821901 822908 0.998504 + . ID=CGI_10028450; scaffold102 TRF Tandem_Repeat 823063 823113 102 + . . scaffold102 TRF Tandem_Repeat 828128 828216 155 + . . scaffold102 GLEAN promoter 832744 833743 1 + . ID=CGI_10028451; scaffold102 GLEAN mRNA 833744 834930 1 + . ID=CGI_10028451; scaffold102 TRF Tandem_Repeat 840874 840913 80 + . . scaffold102 GLEAN promoter 841489 842488 0.889893 + . ID=CGI_10028452; scaffold102 TRF Tandem_Repeat 842121 842193 146 + . . scaffold102 GLEAN mRNA 842489 843644 0.889893 + . ID=CGI_10028452; scaffold102 TRF Tandem_Repeat 845261 845314 99 + . . scaffold102 GLEAN mRNA 846821 848137 0.999064 - . ID=CGI_10028453; scaffold102 GLEAN promoter 848138 849137 0.999064 - . ID=CGI_10028453; scaffold102 GLEAN promoter 848923 849922 0.999661 + . ID=CGI_10028454; scaffold102 GLEAN mRNA 849923 850543 0.999661 + . ID=CGI_10028454; scaffold102 GLEAN mRNA 851623 864363 0.999676 - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 859006 859089 168 + . . scaffold102 TRF Tandem_Repeat 859457 859550 109 + . . scaffold102 TRF Tandem_Repeat 859743 859874 131 + . . scaffold102 TRF Tandem_Repeat 859951 860042 112 + . . scaffold102 TRF Tandem_Repeat 862758 862792 70 + . . scaffold102 GLEAN promoter 864364 865363 0.999676 - . ID=CGI_10028455; scaffold102 TRF Tandem_Repeat 864414 864460 94 + . . scaffold102 TRF Tandem_Repeat 865054 865120 125 + . . scaffold102 GLEAN mRNA 870566 905931 0.380475 - . ID=CGI_10028456; scaffold102 TRF Tandem_Repeat 876763 876818 112 + . . scaffold102 TRF Tandem_Repeat 876830 876867 76 + . . scaffold102 TRF Tandem_Repeat 900336 900422 70 + . . scaffold102 TRF Tandem_Repeat 900517 900626 96 + . . scaffold102 TRF Tandem_Repeat 900697 900862 197 + . . scaffold102 GLEAN promoter 905932 906931 0.380475 - . ID=CGI_10028456; scaffold102 TRF Tandem_Repeat 910854 911069 389 + . . scaffold102 GLEAN mRNA 911204 928936 0.813858 - . ID=CGI_10028457; scaffold102 TRF Tandem_Repeat 917939 917984 60 + . . scaffold102 GLEAN promoter 928937 929936 0.813858 - . ID=CGI_10028457; scaffold102 GLEAN mRNA 930119 940235 0.678096 - . ID=CGI_10028458; scaffold102 WUBlastX LINE_R2-Hero 932316 932432 25 - . . scaffold102 WUBlastX LTR_Gypsy 933279 933713 94 - . . scaffold102 TRF Tandem_Repeat 936720 936775 60 + . . scaffold102 TRF Tandem_Repeat 937061 937175 85 + . . scaffold102 GLEAN promoter 940236 941235 0.678096 - . ID=CGI_10028458; scaffold102 GLEAN mRNA 953597 953962 0.571793 - . ID=CGI_10028459; scaffold102 GLEAN promoter 953963 954962 0.571793 - . ID=CGI_10028459; scaffold102 GLEAN mRNA 961541 993549 0.838657 - . ID=CGI_10028460; scaffold102 TRF Tandem_Repeat 968673 968706 59 + . . scaffold102 WUBlastX LINE_RTE-X 970888 971283 74 - . . scaffold102 WUBlastX LINE_RTE-X 971289 971501 50 - . . scaffold102 WUBlastX LINE_RTE-X 971349 971549 27 - . . scaffold102 WUBlastX LINE_RTE-X 971367 971495 69 - . . scaffold102 WUBlastX LINE_RTE-X 971394 971495 73 - . . scaffold102 TRF Tandem_Repeat 981958 982000 86 + . . scaffold102 WUBlastX LINE_RTE-BovB 984298 984411 42 + . . scaffold102 WUBlastX LINE_RTE-BovB 984589 985008 72 + . . scaffold102 WUBlastX LINE_RTE-BovB 984697 985278 131 + . . scaffold102 WUBlastX LINE_RTE-BovB 984700 985005 171 + . . scaffold102 TRF Tandem_Repeat 986202 986226 50 + . . scaffold102 TRF Tandem_Repeat 993135 993169 70 + . . scaffold102 GLEAN promoter 993550 994549 0.838657 - . ID=CGI_10028460; scaffold102 TRF Tandem_Repeat 994480 994514 70 + . . scaffold102 GLEAN promoter 1008323 1009322 1 + . ID=CGI_10028461; scaffold102 GLEAN mRNA 1009323 1021776 1 + . ID=CGI_10028461; scaffold102 TRF Tandem_Repeat 1020765 1020999 373 + . . scaffold102 TRF Tandem_Repeat 1020797 1020997 103 + . . scaffold102 TRF Tandem_Repeat 1023939 1023975 74 + . . scaffold102 TRF Tandem_Repeat 1025723 1025784 63 + . . scaffold102 WUBlastX LINE_L1-Tx1 1038110 1038979 133 - . . scaffold102 GLEAN promoter 1038199 1039198 0.776794 + . ID=CGI_10028462; scaffold102 GLEAN mRNA 1039199 1040407 0.776794 + . ID=CGI_10028462; scaffold102 GLEAN mRNA 1041781 1041969 0.9996 - . ID=CGI_10028463; scaffold102 GLEAN promoter 1041970 1042969 0.9996 - . ID=CGI_10028463; scaffold102 GLEAN mRNA 1042613 1043137 0.988491 - . ID=CGI_10028464; scaffold102 GLEAN promoter 1043138 1044137 0.988491 - . ID=CGI_10028464; scaffold102 GLEAN mRNA 1044797 1050133 0.283125 - . ID=CGI_10028465; scaffold102 GLEAN promoter 1050134 1051133 0.283125 - . ID=CGI_10028465; scaffold102 GLEAN promoter 1051043 1052042 0.651123 + . ID=CGI_10028466; scaffold102 GLEAN mRNA 1052043 1055262 0.651123 + . ID=CGI_10028466; scaffold102 GLEAN promoter 1060721 1061720 0.838029 + . ID=CGI_10028467; scaffold102 GLEAN mRNA 1061721 1065991 0.838029 + . ID=CGI_10028467; scaffold102 GLEAN mRNA 1069060 1081129 0.999801 - . ID=CGI_10028468; scaffold102 GLEAN promoter 1081130 1082129 0.999801 - . ID=CGI_10028468; scaffold102 GLEAN mRNA 1085143 1089317 0.998989 - . ID=CGI_10028469; scaffold102 GLEAN promoter 1089318 1090317 0.998989 - . ID=CGI_10028469; scaffold102 TRF Tandem_Repeat 1090620 1090706 90 + . . scaffold102 TRF Tandem_Repeat 1090864 1090989 132 + . . scaffold102 TRF Tandem_Repeat 1090865 1090981 159 + . . scaffold102 WUBlastX LINE_RTE-X 1091970 1092233 52 - . . scaffold102 GLEAN promoter 1094942 1095941 0.998596 + . ID=CGI_10028470; scaffold102 WUBlastX LTR_Gypsy 1095900 1096169 66 + . . scaffold102 GLEAN mRNA 1095942 1101722 0.998596 + . ID=CGI_10028470; scaffold102 WUBlastX LTR_Gypsy 1096574 1096699 35 + . . scaffold102 TRF Tandem_Repeat 1097850 1097899 66 + . . scaffold102 TRF Tandem_Repeat 1099900 1100980 1304 + . . scaffold102 GLEAN promoter 1100786 1101785 0.651135 + . ID=CGI_10028471; scaffold102 GLEAN mRNA 1101786 1113248 0.651135 + . ID=CGI_10028471; scaffold102 TRF Tandem_Repeat 1115766 1115800 54 + . . scaffold102 GLEAN promoter 1117231 1118230 0.99892 + . ID=CGI_10028472; scaffold102 GLEAN mRNA 1118231 1127298 0.99892 + . ID=CGI_10028472; scaffold102 TRF Tandem_Repeat 1123144 1124696 449 + . . scaffold102 GLEAN mRNA 1130559 1139437 0.999925 - . ID=CGI_10028473; scaffold102 GLEAN promoter 1139438 1140437 0.999925 - . ID=CGI_10028473; scaffold102 GLEAN mRNA 1142791 1154685 0.999233 - . ID=CGI_10028474; scaffold102 WUBlastX LINE_R2-Hero 1149148 1149339 71 - . . scaffold102 WUBlastX LINE_R2-Hero 1149339 1149926 256 - . . scaffold102 GLEAN promoter 1154686 1155685 0.999233 - . ID=CGI_10028474; scaffold102 GLEAN promoter 1155639 1156638 0.889923 + . ID=CGI_10028475; scaffold102 GLEAN mRNA 1156639 1157923 0.889923 + . ID=CGI_10028475; scaffold102 GLEAN mRNA 1158738 1161676 0.558395 - . ID=CGI_10028476; scaffold102 GLEAN promoter 1160696 1161695 0.54456 + . ID=CGI_10028477; scaffold102 GLEAN promoter 1161677 1162676 0.558395 - . ID=CGI_10028476; scaffold102 GLEAN mRNA 1161696 1175781 0.54456 + . ID=CGI_10028477; scaffold102 GLEAN mRNA 1168375 1176214 0.999676 - . ID=CGI_10028478; scaffold102 GLEAN promoter 1176215 1177214 0.999676 - . ID=CGI_10028478; scaffold102 GLEAN mRNA 1178703 1179143 0.998621 - . ID=CGI_10028479; scaffold102 GLEAN promoter 1178754 1179753 0.600219 + . ID=CGI_10028480; scaffold102 GLEAN promoter 1179144 1180143 0.998621 - . ID=CGI_10028479; scaffold102 GLEAN mRNA 1179754 1187353 0.600219 + . ID=CGI_10028480; scaffold102 TRF Tandem_Repeat 1183812 1183864 106 + . . scaffold102 TRF Tandem_Repeat 1187528 1187604 109 + . . scaffold102 GLEAN promoter 1190507 1191506 0.995761 + . ID=CGI_10028481; scaffold102 GLEAN mRNA 1191507 1196166 0.995761 + . ID=CGI_10028481; scaffold102 GLEAN mRNA 1205974 1206709 0.999473 - . ID=CGI_10028482; scaffold102 GLEAN promoter 1206710 1207709 0.999473 - . ID=CGI_10028482; scaffold102 WUBlastX LINE_L1-Tx1 1228174 1228344 28 - . . scaffold102 WUBlastX LINE_L1-Tx1 1228310 1228423 36 - . . scaffold102 WUBlastX LINE_L1-Tx1 1228422 1228547 47 - . . scaffold102 WUBlastX LINE_L1 1228547 1229194 40 - . . scaffold102 WUBlastX LINE_L1-Tx1 1228652 1229194 286 - . . scaffold102 WUBlastX LINE_L1-Tx1 1229185 1229382 72 - . . scaffold102 WUBlastX LINE_L1 1229382 1229516 21 - . . scaffold102 WUBlastX LINE_L1-Tx1 1230205 1230594 41 - . . scaffold102 WUBlastX LINE_L1-Tx1 1230587 1230766 40 - . . scaffold102 TRF Tandem_Repeat 1238362 1238387 52 + . . scaffold102 TRF Tandem_Repeat 1239155 1240060 1127 + . . scaffold102 GLEAN promoter 1239683 1240682 1 + . ID=CGI_10028483; scaffold102 GLEAN mRNA 1240683 1241397 1 + . ID=CGI_10028483; scaffold102 GLEAN mRNA 1243844 1245402 0.999948 - . ID=CGI_10028484; scaffold102 GLEAN promoter 1244955 1245954 1 + . ID=CGI_10028485; scaffold102 GLEAN promoter 1245403 1246402 0.999948 - . ID=CGI_10028484; scaffold102 GLEAN mRNA 1245955 1247869 1 + . ID=CGI_10028485; scaffold102 GLEAN promoter 1256055 1257054 0.999984 + . ID=CGI_10028486; scaffold102 GLEAN mRNA 1257055 1258245 0.999984 + . ID=CGI_10028486; scaffold102 GLEAN mRNA 1259470 1269688 0.999995 - . ID=CGI_10028487; scaffold102 TRF Tandem_Repeat 1262293 1262347 83 + . . scaffold102 TRF Tandem_Repeat 1263671 1263737 89 + . . scaffold102 TRF Tandem_Repeat 1264232 1264275 88 + . . scaffold102 TRF Tandem_Repeat 1264273 1264302 60 + . . scaffold102 TRF Tandem_Repeat 1264481 1264526 83 + . . scaffold102 TRF Tandem_Repeat 1266578 1266644 89 + . . scaffold102 GLEAN promoter 1269689 1270688 0.999995 - . ID=CGI_10028487; scaffold102 GLEAN mRNA 1269983 1282871 0.999387 - . ID=CGI_10028488; scaffold102 TRF Tandem_Repeat 1273723 1274173 717 + . . scaffold102 TRF Tandem_Repeat 1275063 1275088 52 + . . scaffold102 WUBlastX LINE_RTE-BovB 1278860 1279117 104 + . . scaffold102 WUBlastX LINE_RTE-BovB 1278896 1279102 116 + . . scaffold102 WUBlastX LINE_RTE-BovB 1279108 1279260 115 + . . scaffold102 WUBlastX LINE_RTE-BovB 1279108 1279497 39 + . . scaffold102 WUBlastX LINE_RTE-BovB 1279126 1279314 50 + . . scaffold102 WUBlastX LINE_RTE-BovB 1279275 1279418 45 + . . scaffold102 WUBlastX DNA_Harbinger 1279856 1280041 116 + . . scaffold102 WUBlastX LINE_RTE-BovB 1280117 1280311 34 + . . scaffold102 WUBlastX LINE_RTE-BovB 1280382 1280534 28 + . . scaffold102 GLEAN promoter 1282279 1283278 0.410523 + . ID=CGI_10028489; scaffold102 GLEAN promoter 1282872 1283871 0.999387 - . ID=CGI_10028488; scaffold102 GLEAN mRNA 1283279 1293184 0.410523 + . ID=CGI_10028489; scaffold102 TRF Tandem_Repeat 1286553 1286829 315 + . . scaffold102 TRF Tandem_Repeat 1288290 1288336 94 + . . scaffold102 GLEAN promoter 1295181 1296180 0.999661 + . ID=CGI_10028490; scaffold102 GLEAN mRNA 1296181 1296732 0.999661 + . ID=CGI_10028490; scaffold102 GLEAN mRNA 1297354 1314047 0.994691 - . ID=CGI_10028491; scaffold102 TRF Tandem_Repeat 1298207 1298505 285 + . . scaffold102 TRF Tandem_Repeat 1298619 1298905 324 + . . scaffold102 TRF Tandem_Repeat 1298685 1298856 111 + . . scaffold102 TRF Tandem_Repeat 1299107 1299170 119 + . . scaffold102 TRF Tandem_Repeat 1300999 1301137 226 + . . scaffold102 GLEAN promoter 1302586 1303585 1 + . ID=CGI_10028492; scaffold102 GLEAN mRNA 1303586 1305303 1 + . ID=CGI_10028492; scaffold102 TRF Tandem_Repeat 1305084 1305112 58 + . . scaffold102 GLEAN promoter 1314048 1315047 0.994691 - . ID=CGI_10028491; scaffold102 GLEAN mRNA 1314851 1319525 0.466859 - . ID=CGI_10028493; scaffold102 GLEAN promoter 1319526 1320525 0.466859 - . ID=CGI_10028493; scaffold102 TRF Tandem_Repeat 1319811 1319857 94 + . . scaffold102 GLEAN promoter 1323561 1324560 0.91137 + . ID=CGI_10028494; scaffold102 GLEAN mRNA 1324561 1328403 0.91137 + . ID=CGI_10028494; scaffold102 TRF Tandem_Repeat 1333221 1333723 691 + . . scaffold102 WUBlastX LINE_Penelope 1334043 1335113 300 - . . scaffold102 WUBlastX LINE_Penelope 1335109 1335429 88 - . . scaffold102 TRF Tandem_Repeat 1339543 1339636 55 + . . scaffold102 WUBlastX LINE_RTE-BovB 1340375 1341076 552 - . . scaffold102 WUBlastX LINE_L1 1340474 1341199 85 - . . scaffold102 WUBlastX LINE_RTE-BovB 1341228 1343021 1264 - . . scaffold102 GLEAN promoter 1345270 1346269 0.999676 + . ID=CGI_10028495; scaffold102 GLEAN mRNA 1346270 1361676 0.999676 + . ID=CGI_10028495; scaffold102 TRF Tandem_Repeat 1349720 1349775 76 + . . scaffold102 TRF Tandem_Repeat 1352593 1352651 118 + . . scaffold102 TRF Tandem_Repeat 1354904 1354950 58 + . . scaffold102 TRF Tandem_Repeat 1354905 1354950 65 + . . scaffold102 TRF Tandem_Repeat 1384495 1384522 56 + . . scaffold102 GLEAN mRNA 1387564 1391413 0.990365 - . ID=CGI_10028496; scaffold102 GLEAN promoter 1391414 1392413 0.990365 - . ID=CGI_10028496; scaffold102 TRF Tandem_Repeat 1392188 1392242 103 + . . scaffold102 TRF Tandem_Repeat 1393599 1393642 88 + . . scaffold102 GLEAN promoter 1395887 1396886 0.890801 + . ID=CGI_10028497; scaffold102 GLEAN mRNA 1396887 1398747 0.890801 + . ID=CGI_10028497; scaffold102 TRF Tandem_Repeat 1397068 1397119 104 + . . scaffold102 GLEAN mRNA 1399803 1401047 1 - . ID=CGI_10028498; scaffold102 GLEAN promoter 1401048 1402047 1 - . ID=CGI_10028498; scaffold102 GLEAN mRNA 1401485 1402711 0.999372 - . ID=CGI_10028499; scaffold102 GLEAN promoter 1402712 1403711 0.999372 - . ID=CGI_10028499; scaffold102 TRF Tandem_Repeat 1420208 1420269 124 + . . scaffold102 WUBlastX LTR_Gypsy 1429431 1429577 55 + . . scaffold102 WUBlastX LTR_Gypsy 1429488 1430138 150 + . . scaffold102 WUBlastX LTR_Gypsy 1429745 1432132 1568 + . . scaffold102 WUBlastX LTR_Gypsy 1431326 1432345 253 + . . scaffold102 WUBlastX LTR_Gypsy 1432311 1433003 165 + . . scaffold102 WUBlastX LTR_Gypsy 1432365 1432886 271 + . . scaffold102 WUBlastX LINE_Penelope 1435370 1435627 39 - . . scaffold102 WUBlastX LINE_Penelope 1435397 1435525 42 - . . scaffold102 WUBlastX LINE_Penelope 1436257 1436442 105 - . . scaffold102 WUBlastX LINE_CR1-L2 1441123 1441353 36 - . . scaffold102 WUBlastX LINE_L2 1441295 1441579 81 - . . scaffold102 WUBlastX LINE_L2 1441478 1441621 35 - . . scaffold102 WUBlastX LINE_L2 1441602 1442162 205 - . . scaffold102 WUBlastX LINE_L2 1441632 1442261 43 - . . scaffold102 WUBlastX LINE_RTE-X 1442705 1442884 103 - . . scaffold102 WUBlastX LINE_RTE-X 1442705 1442944 102 - . . scaffold102 WUBlastX LTR_DIRS 1445645 1445851 94 - . . scaffold102 WUBlastX LTR_DIRS 1445846 1446346 259 - . . scaffold102 WUBlastX LTR_DIRS 1446504 1446812 176 - . . scaffold102 WUBlastX LTR_DIRS 1446812 1447513 285 - . . scaffold102 WUBlastX LTR_DIRS 1447527 1448435 682 - . . scaffold102 WUBlastX LTR_DIRS 1448382 1449086 191 - . . scaffold102 GLEAN promoter 1455039 1456038 0.717679 + . ID=CGI_10028500; scaffold102 GLEAN mRNA 1456039 1465304 0.717679 + . ID=CGI_10028500; scaffold102 TRF Tandem_Repeat 1462342 1462394 88 + . . scaffold102 TRF Tandem_Repeat 1463912 1463936 50 + . . scaffold102 GLEAN mRNA 1468887 1469495 0.999992 - . ID=CGI_10028501; scaffold102 GLEAN promoter 1469081 1470080 0.77769 + . ID=CGI_10028502; scaffold102 GLEAN promoter 1469496 1470495 0.999992 - . ID=CGI_10028501; scaffold102 GLEAN mRNA 1470081 1471243 0.77769 + . ID=CGI_10028502; scaffold102 TRF Tandem_Repeat 1472501 1472554 108 + . . scaffold102 GLEAN promoter 1488272 1489271 1 + . ID=CGI_10028503; scaffold102 GLEAN mRNA 1489272 1493003 1 + . ID=CGI_10028503; scaffold102 TRF Tandem_Repeat 1507460 1508658 1649 + . . scaffold102 GLEAN promoter 1511059 1512058 0.864112 + . ID=CGI_10028504; scaffold102 GLEAN mRNA 1512059 1529295 0.864112 + . ID=CGI_10028504; scaffold102 TRF Tandem_Repeat 1518795 1519418 809 + . . scaffold102 TRF Tandem_Repeat 1518795 1519693 959 + . . scaffold102 TRF Tandem_Repeat 1519427 1519693 296 + . . scaffold102 GLEAN mRNA 1532525 1541174 0.3501 - . ID=CGI_10028505; scaffold102 WUBlastX DNA_hAT-Ac 1538274 1538573 64 - . . scaffold102 WUBlastX DNA_hAT-Ac 1538379 1538609 81 - . . scaffold102 WUBlastX DNA_hAT-Ac 1538400 1538654 70 - . . scaffold102 WUBlastX DNA_hAT 1538666 1538815 55 - . . scaffold102 TRF Tandem_Repeat 1539634 1539864 333 + . . scaffold102 GLEAN promoter 1541175 1542174 0.3501 - . ID=CGI_10028505; scaffold102 TRF Tandem_Repeat 1541220 1541568 413 + . . scaffold102 GLEAN mRNA 1567042 1594359 0.948777 - . ID=CGI_10028506; scaffold102 GLEAN promoter 1583621 1584620 0.993504 + . ID=CGI_10028507; scaffold102 GLEAN mRNA 1584621 1586679 0.993504 + . ID=CGI_10028507; scaffold102 GLEAN promoter 1594360 1595359 0.948777 - . ID=CGI_10028506; scaffold102 TRF Tandem_Repeat 1595909 1595940 64 + . . scaffold102 GLEAN mRNA 1597346 1601269 1 - . ID=CGI_10028508; scaffold102 GLEAN promoter 1601270 1602269 1 - . ID=CGI_10028508; scaffold102 TRF Tandem_Repeat 1602462 1602511 50 + . . scaffold102 TRF Tandem_Repeat 1602881 1602928 96 + . . scaffold102 GLEAN mRNA 1618848 1632605 0.973548 - . ID=CGI_10028509; scaffold102 GLEAN promoter 1632606 1633605 0.973548 - . ID=CGI_10028509; scaffold102 GLEAN promoter 1640345 1641344 1 + . ID=CGI_10028510; scaffold102 GLEAN mRNA 1641345 1642133 1 + . ID=CGI_10028510; scaffold102 TRF Tandem_Repeat 1643246 1643865 864 + . . scaffold102 TRF Tandem_Repeat 1644733 1644790 98 + . . scaffold102 TRF Tandem_Repeat 1645260 1645345 59 + . . scaffold102 TRF Tandem_Repeat 1645268 1645354 52 + . . scaffold102 GLEAN promoter 1646860 1647859 0.99779 + . ID=CGI_10028511; scaffold102 GLEAN mRNA 1647860 1660323 0.99779 + . ID=CGI_10028511; scaffold102 TRF Tandem_Repeat 1651871 1651916 92 + . . scaffold102 TRF Tandem_Repeat 1656304 1656643 419 + . . scaffold102 TRF Tandem_Repeat 1658444 1658490 94 + . . scaffold102 GLEAN promoter 1659434 1660433 0.990878 + . ID=CGI_10028512; scaffold102 GLEAN mRNA 1660434 1671093 0.990878 + . ID=CGI_10028512; scaffold102 TRF Tandem_Repeat 1666774 1668126 1726 + . . scaffold102 TRF Tandem_Repeat 1666774 1668126 1975 + . . scaffold102 TRF Tandem_Repeat 1666791 1668126 1969 + . . scaffold102 TRF Tandem_Repeat 1668678 1668908 372 + . . scaffold102 TRF Tandem_Repeat 1669115 1669184 95 + . . scaffold102 GLEAN promoter 1670722 1671721 0.996286 + . ID=CGI_10028513; scaffold102 GLEAN mRNA 1671722 1683864 0.996286 + . ID=CGI_10028513; scaffold102 TRF Tandem_Repeat 1675411 1675457 94 + . . scaffold102 TRF Tandem_Repeat 1679100 1679571 597 + . . scaffold102 TRF Tandem_Repeat 1679100 1679571 701 + . . scaffold102 GLEAN mRNA 1683595 1689557 1 - . ID=CGI_10028514; scaffold102 TRF Tandem_Repeat 1683939 1683982 88 + . . scaffold102 TRF Tandem_Repeat 1688674 1688718 90 + . . scaffold102 GLEAN promoter 1689558 1690557 1 - . ID=CGI_10028514; scaffold102 TRF Tandem_Repeat 1690175 1690212 76 + . . scaffold102 TRF Tandem_Repeat 1694807 1694839 57 + . . scaffold102 TRF Tandem_Repeat 1696216 1696270 110 + . . scaffold102 GLEAN mRNA 1697739 1700248 0.996731 - . ID=CGI_10028515; scaffold102 GLEAN promoter 1700249 1701248 0.996731 - . ID=CGI_10028515; scaffold102 WUBlastX LINE_L1 1702681 1702746 21 + . . scaffold102 WUBlastX LINE_L1-Tx1 1703540 1703959 51 + . . scaffold102 WUBlastX LINE_L1-Tx1 1703555 1704043 49 + . . scaffold102 WUBlastX LINE_RTE-BovB 1710848 1711042 129 + . . scaffold102 WUBlastX LINE_RTE-BovB 1711044 1711241 88 + . . scaffold102 WUBlastX LINE_RTE-BovB 1711366 1711845 79 - . . scaffold102 TRF Tandem_Repeat 1713237 1713862 1089 + . . scaffold102 TRF Tandem_Repeat 1716224 1716257 59 + . . scaffold1020 GLEAN promoter 9748 10747 1 + . ID=CGI_10012847; scaffold1020 GLEAN mRNA 10748 11618 1 + . ID=CGI_10012847; scaffold1020 WUBlastX DNA_IS4EU 10748 10828 20 + . . scaffold1020 WUBlastX DNA_P 11334 11606 48 + . . scaffold1020 WUBlastX DNA_P 11337 11453 53 + . . scaffold1020 WUBlastX DNA_IS4EU 17065 17277 30 + . . scaffold1020 WUBlastX DNA_IS4EU 17173 17280 37 + . . scaffold1020 WUBlastX DNA_IS4EU 18108 18167 36 + . . scaffold1020 WUBlastX DNA_IS4EU 18272 18499 55 + . . scaffold1020 WUBlastX DNA_IS4EU 18317 18502 73 + . . scaffold1020 WUBlastX DNA_IS4EU 19255 19803 297 - . . scaffold1020 WUBlastX DNA_IS4EU 19279 19899 145 - . . scaffold1020 WUBlastX DNA_Kolobok-IS4 19881 20042 34 - . . scaffold1020 WUBlastX DNA_IS4EU 19893 20069 33 - . . scaffold1020 WUBlastX DNA_IS4EU 19893 20000 46 - . . scaffold1020 TRF Tandem_Repeat 25354 25391 51 + . . scaffold1020 TRF Tandem_Repeat 27552 27579 56 + . . scaffold1020 WUBlastX LINE_RTE-X 35007 35297 35 + . . scaffold1020 WUBlastX LTR_Gypsy 38480 38716 115 + . . scaffold1020 WUBlastX LTR_Gypsy 38713 39249 203 + . . scaffold1020 WUBlastX LTR_Gypsy 39172 39396 53 + . . scaffold1020 WUBlastX LTR_Gypsy 39501 39821 24 + . . scaffold1020 WUBlastX LTR_Gypsy 39579 40025 267 + . . scaffold1020 WUBlastX LTR_Gypsy 40021 41112 836 + . . scaffold1020 WUBlastX LTR_Gypsy 41068 41130 24 + . . scaffold1020 WUBlastX LTR_Gypsy 41130 41951 268 + . . scaffold1020 WUBlastX LTR_Gypsy 41259 42377 731 + . . scaffold1020 WUBlastX LTR_Gypsy 42042 42953 624 + . . scaffold1020 WUBlastX LTR_Gypsy 42078 43136 83 + . . scaffold1020 GLEAN promoter 42546 43545 0.876335 + . ID=CGI_10012849; scaffold1020 GLEAN mRNA 43546 44148 0.876335 + . ID=CGI_10012849; scaffold1020 TRF Tandem_Repeat 56074 56103 60 + . . scaffold1020 TRF Tandem_Repeat 64564 64599 54 + . . scaffold1020 TRF Tandem_Repeat 71513 71551 78 + . . scaffold1020 TRF Tandem_Repeat 72940 73036 151 + . . scaffold1020 WUBlastX LINE_Penelope 79194 79370 45 - . . scaffold1020 WUBlastX LINE_Penelope 79629 79772 46 - . . scaffold1020 WUBlastX LTR_Gypsy 106203 106568 201 - . . scaffold1020 WUBlastX LTR_Gypsy 106750 106965 22 - . . scaffold1020 WUBlastX LTR_Gypsy 107024 107470 39 - . . scaffold1020 WUBlastX LTR_Gypsy 107093 107638 322 - . . scaffold1020 TRF Tandem_Repeat 112052 112182 165 + . . scaffold1020 TRF Tandem_Repeat 113836 114004 203 + . . scaffold1020 TRF Tandem_Repeat 122734 122814 144 + . . scaffold1020 WUBlastX LINE_CR1-L2 133104 133253 29 - . . scaffold1020 WUBlastX LINE_L2 133176 134231 20 - . . scaffold1020 WUBlastX LINE_CR1 133191 133277 36 - . . scaffold1020 WUBlastX LINE_L2 133738 134052 67 - . . scaffold1020 WUBlastX LINE_L2 133896 134231 72 - . . scaffold1020 WUBlastX LINE_L2 134043 134231 75 - . . scaffold1020 WUBlastX LINE_L2 134248 134448 39 - . . scaffold1020 WUBlastX LINE_L2 134254 134376 71 - . . scaffold1020 GLEAN mRNA 163259 166698 1 - . ID=CGI_10012852; scaffold1020 TRF Tandem_Repeat 164569 164610 84 + . . scaffold1020 GLEAN promoter 166699 167698 1 - . ID=CGI_10012852; scaffold1020 GLEAN mRNA 167768 168151 1 - . ID=CGI_10012853; scaffold1020 GLEAN promoter 168152 169151 1 - . ID=CGI_10012853; scaffold1020 TRF Tandem_Repeat 170781 170844 83 + . . scaffold1020 TRF Tandem_Repeat 170781 170844 83 + . . scaffold1020 GLEAN mRNA 171768 178827 1 - . ID=CGI_10012854; scaffold1020 TRF Tandem_Repeat 174979 175119 228 + . . scaffold1020 GLEAN promoter 178828 179827 1 - . ID=CGI_10012854; scaffold1020 GLEAN mRNA 186471 206717 0.999666 - . ID=CGI_10012855; scaffold1020 WUBlastX LINE_L2 197240 197890 280 - . . scaffold1020 WUBlastX LINE_L2 197591 197992 68 - . . scaffold1020 TRF Tandem_Repeat 202299 202379 108 + . . scaffold1020 WUBlastX DNA_IS4EU 202396 202974 91 - . . scaffold1020 GLEAN promoter 206718 207717 0.999666 - . ID=CGI_10012855; scaffold1020 GLEAN mRNA 209168 219161 0.999975 - . ID=CGI_10012856; scaffold1020 TRF Tandem_Repeat 211154 211253 200 + . . scaffold1020 TRF Tandem_Repeat 218206 218249 79 + . . scaffold1020 GLEAN promoter 219162 220161 0.999975 - . ID=CGI_10012856; scaffold1020 TRF Tandem_Repeat 219942 220078 107 + . . scaffold1020 WUBlastX LINE_RTE-X 222120 222569 74 + . . scaffold1020 WUBlastX LINE_RTE-X 223784 224008 42 + . . scaffold1020 TRF Tandem_Repeat 228353 228397 90 + . . scaffold1020 TRF Tandem_Repeat 254325 254439 72 + . . scaffold1020 WUBlastX LTR_Gypsy 257988 258431 149 - . . scaffold1020 WUBlastX LTR_Gypsy 258087 259007 386 - . . scaffold1020 WUBlastX LTR_Gypsy 258444 259112 258 - . . scaffold1020 WUBlastX LTR_Gypsy 259100 259228 40 - . . scaffold1020 WUBlastX LTR_Gypsy 259133 259219 44 - . . scaffold1020 WUBlastX LTR_Gypsy 259237 259848 449 - . . scaffold1020 WUBlastX LTR_Gypsy 259240 259974 169 - . . scaffold1020 WUBlastX LTR_Gypsy 260780 260833 20 - . . scaffold1020 TRF Tandem_Repeat 261773 261886 68 + . . scaffold1020 TRF Tandem_Repeat 262009 262136 60 + . . scaffold1020 TRF Tandem_Repeat 264622 264781 88 + . . scaffold1020 TRF Tandem_Repeat 264637 264771 89 + . . scaffold1020 TRF Tandem_Repeat 267033 267160 69 + . . scaffold1020 TRF Tandem_Repeat 268226 268344 91 + . . scaffold1020 GLEAN promoter 272652 273651 0.999709 + . ID=CGI_10012857; scaffold1020 GLEAN mRNA 273652 274599 0.999709 + . ID=CGI_10012857; scaffold1020 TRF Tandem_Repeat 276731 276791 115 + . . scaffold1020 GLEAN promoter 281198 282197 0.857946 + . ID=CGI_10012858; scaffold1020 GLEAN mRNA 282198 287246 0.857946 + . ID=CGI_10012858; scaffold1020 WUBlastX LINE_RTE-X 286369 286791 112 + . . scaffold1020 GLEAN promoter 286994 287993 0.617707 + . ID=CGI_10012859; scaffold1020 GLEAN mRNA 287994 288176 0.617707 + . ID=CGI_10012859; scaffold1020 TRF Tandem_Repeat 289849 289898 75 + . . scaffold1020 TRF Tandem_Repeat 291394 291447 99 + . . scaffold1020 GLEAN mRNA 292951 294033 0.528484 - . ID=CGI_10012860; scaffold1020 GLEAN promoter 294034 295033 0.528484 - . ID=CGI_10012860; scaffold1020 WUBlastX LINE_L1-Tx1 295587 297092 244 + . . scaffold1020 WUBlastX LINE_L1-Tx1 296410 297579 280 + . . scaffold1020 WUBlastX LINE_L1-Tx1 297581 297781 56 + . . scaffold1020 WUBlastX LINE_L1-Tx1 297614 297781 77 + . . scaffold1020 WUBlastX LINE_L1-Tx1 297762 298277 121 + . . scaffold1020 WUBlastX LINE_L1-Tx1 298268 298402 22 + . . scaffold1020 TRF Tandem_Repeat 298871 300255 1864 + . . scaffold1020 TRF Tandem_Repeat 298871 300255 1787 + . . scaffold1020 TRF Tandem_Repeat 301472 301521 64 + . . scaffold1020 TRF Tandem_Repeat 301475 301522 51 + . . scaffold1020 WUBlastX LINE_L1-Tx1 301579 301950 51 + . . scaffold1020 TRF Tandem_Repeat 303085 304166 1408 + . . scaffold1020 TRF Tandem_Repeat 305602 305651 66 + . . scaffold1020 TRF Tandem_Repeat 315521 315560 80 + . . scaffold1020 WUBlastX DNA_TcMar-Tc1 316337 316654 56 + . . scaffold1020 WUBlastX DNA_TcMar-Tc1 316537 316986 76 + . . scaffold1020 WUBlastX DNA_TcMar-Tc1 316681 316962 98 + . . scaffold1020 WUBlastX DNA_TcMar-Tc1 316947 317357 101 + . . scaffold1020 WUBlastX DNA_TcMar-Tc1 317064 317363 144 + . . scaffold1020 GLEAN mRNA 318678 322978 0.999965 - . ID=CGI_10012861; scaffold1020 TRF Tandem_Repeat 319833 319880 78 + . . scaffold1020 GLEAN promoter 322979 323978 0.999965 - . ID=CGI_10012861; scaffold1020 WUBlastX LTR_Gypsy 324411 326069 1250 - . . scaffold1020 WUBlastX LTR_Gypsy 325767 326135 109 - . . scaffold1020 WUBlastX DNA_Harbinger 326368 326478 88 - . . scaffold1020 WUBlastX DNA_hAT-Tip100 326626 326961 33 + . . scaffold1020 WUBlastX DNA_hAT-Tip100 326981 327157 34 + . . scaffold1020 WUBlastX DNA_hAT-Tip100 327124 327675 109 + . . scaffold1020 WUBlastX LTR_Gypsy 328008 328724 459 - . . scaffold1020 WUBlastX LTR_Gypsy 328475 331114 1761 - . . scaffold1020 WUBlastX LTR_Gypsy 328727 330958 1953 - . . scaffold1020 WUBlastX LTR_Gypsy 331153 331431 39 - . . scaffold1020 WUBlastX LTR_Gypsy 331195 332064 447 - . . scaffold1020 GLEAN promoter 331335 332334 0.374641 + . ID=CGI_10012862; scaffold1020 GLEAN mRNA 332335 340647 0.374641 + . ID=CGI_10012862; scaffold1021 TRF Tandem_Repeat 51 116 80 + . . scaffold1021 GLEAN mRNA 4031 6047 0.999927 - . ID=CGI_10022474; scaffold1021 GLEAN promoter 6048 7047 0.999927 - . ID=CGI_10022474; scaffold1021 GLEAN mRNA 6347 6559 0.997272 - . ID=CGI_10022475; scaffold1021 GLEAN promoter 6560 7559 0.997272 - . ID=CGI_10022475; scaffold1021 GLEAN promoter 6738 7737 1 + . ID=CGI_10022476; scaffold1021 GLEAN mRNA 7738 12011 1 + . ID=CGI_10022476; scaffold1021 TRF Tandem_Repeat 11904 11955 59 + . . scaffold1021 GLEAN mRNA 13822 15194 0.999994 - . ID=CGI_10022477; scaffold1021 GLEAN promoter 15195 16194 0.999994 - . ID=CGI_10022477; scaffold1021 GLEAN promoter 20717 21716 0.998451 + . ID=CGI_10022478; scaffold1021 GLEAN mRNA 21717 29948 0.998451 + . ID=CGI_10022478; scaffold1021 TRF Tandem_Repeat 31464 33098 2546 + . . scaffold1021 GLEAN promoter 34267 35266 0.5 + . ID=CGI_10022479; scaffold1021 GLEAN mRNA 35267 41753 0.5 + . ID=CGI_10022479; scaffold1021 GLEAN mRNA 45101 49191 0.987278 - . ID=CGI_10022480; scaffold1021 GLEAN promoter 49192 50191 0.987278 - . ID=CGI_10022480; scaffold1021 GLEAN mRNA 50298 52677 1 - . ID=CGI_10022481; scaffold1021 TRF Tandem_Repeat 51314 51379 123 + . . scaffold1021 GLEAN promoter 52678 53677 1 - . ID=CGI_10022481; scaffold1021 GLEAN mRNA 53918 59761 1 - . ID=CGI_10022482; scaffold1021 GLEAN promoter 59762 60761 1 - . ID=CGI_10022482; scaffold1021 GLEAN mRNA 61697 98005 0.972899 - . ID=CGI_10022483; scaffold1021 TRF Tandem_Repeat 90661 91610 1340 + . . scaffold1021 TRF Tandem_Repeat 91615 91666 68 + . . scaffold1021 TRF Tandem_Repeat 91622 91664 68 + . . scaffold1021 GLEAN promoter 98006 99005 0.972899 - . ID=CGI_10022483; scaffold1021 GLEAN promoter 99590 100589 0.994213 + . ID=CGI_10022484; scaffold1021 GLEAN mRNA 100590 130334 0.994213 + . ID=CGI_10022484; scaffold1021 WUBlastX LTR_DIRS 100986 101150 101 + . . scaffold1021 WUBlastX LTR_DIRS 101520 102215 272 + . . scaffold1021 WUBlastX LTR_DIRS 102220 102507 68 + . . scaffold1021 WUBlastX LTR_DIRS 102301 102486 73 + . . scaffold1021 WUBlastX LTR_DIRS 102524 103147 168 + . . scaffold1021 WUBlastX LTR_DIRS 102932 103225 49 + . . scaffold1021 WUBlastX LTR_DIRS 103677 103769 26 + . . scaffold1021 WUBlastX LTR_DIRS 104739 104852 36 + . . scaffold1021 WUBlastX LTR_DIRS 104843 105007 46 + . . scaffold1021 TRF Tandem_Repeat 106073 106117 90 + . . scaffold1021 TRF Tandem_Repeat 128945 128988 88 + . . scaffold1021 TRF Tandem_Repeat 135740 135768 58 + . . scaffold1021 GLEAN promoter 137465 138464 0.99899 + . ID=CGI_10022485; scaffold1021 GLEAN mRNA 138465 145949 0.99899 + . ID=CGI_10022485; scaffold1021 TRF Tandem_Repeat 139101 139150 100 + . . scaffold1021 GLEAN promoter 164692 165691 0.89856 + . ID=CGI_10022486; scaffold1021 GLEAN mRNA 165692 171902 0.89856 + . ID=CGI_10022486; scaffold1021 WUBlastX DNA_TcMar-Fot1 201930 202310 158 - . . scaffold1021 WUBlastX DNA_TcMar-Fot1 202321 202638 70 - . . scaffold1021 WUBlastX LINE_Penelope 211268 211600 61 + . . scaffold1021 WUBlastX LINE_Penelope 211271 211723 57 + . . scaffold1021 GLEAN mRNA 223361 235008 0.999949 - . ID=CGI_10022487; scaffold1021 GLEAN promoter 235009 236008 0.999949 - . ID=CGI_10022487; scaffold1021 TRF Tandem_Repeat 246816 247746 1064 + . . scaffold1021 TRF Tandem_Repeat 252346 252396 84 + . . scaffold1021 GLEAN mRNA 253592 262840 0.558214 - . ID=CGI_10022488; scaffold1021 TRF Tandem_Repeat 260119 261034 1287 + . . scaffold1021 WUBlastX LINE_L1-Tx1 261352 261573 93 + . . scaffold1021 TRF Tandem_Repeat 262055 262088 50 + . . scaffold1021 GLEAN promoter 262841 263840 0.558214 - . ID=CGI_10022488; scaffold1021 TRF Tandem_Repeat 265384 267401 2770 + . . scaffold1021 TRF Tandem_Repeat 265924 267401 2164 + . . scaffold1021 TRF Tandem_Repeat 269854 270692 1389 + . . scaffold1021 WUBlastX DNA_IS4EU 274098 274475 118 + . . scaffold1021 WUBlastX DNA_IS4EU 274672 274836 78 + . . scaffold1021 WUBlastX DNA_IS4EU 274708 274836 104 + . . scaffold1021 WUBlastX DNA_Kolobok-IS4 277458 277571 33 + . . scaffold1021 WUBlastX DNA_Kolobok-IS4 277604 277771 54 + . . scaffold1021 WUBlastX DNA_IS4EU 277792 278292 123 + . . scaffold1021 TRF Tandem_Repeat 286109 286139 53 + . . scaffold1021 TRF Tandem_Repeat 288051 288097 58 + . . scaffold1021 TRF Tandem_Repeat 288051 288095 72 + . . scaffold1021 WUBlastX DNA_Crypton 291914 292531 336 + . . scaffold1021 WUBlastX DNA_Crypton 292349 292588 78 + . . scaffold1021 WUBlastX DNA_Crypton 292693 293370 163 + . . scaffold1021 WUBlastX DNA_Crypton 292765 293112 169 + . . scaffold1021 TRF Tandem_Repeat 296667 296731 76 + . . scaffold1021 TRF Tandem_Repeat 296676 296731 67 + . . scaffold1021 GLEAN promoter 326937 327936 1 + . ID=CGI_10022489; scaffold1021 GLEAN mRNA 327937 330845 1 + . ID=CGI_10022489; scaffold1021 GLEAN mRNA 332240 333568 0.593391 - . ID=CGI_10022490; scaffold1021 GLEAN promoter 333569 334568 0.593391 - . ID=CGI_10022490; scaffold1021 TRF Tandem_Repeat 346522 346573 104 + . . scaffold1021 TRF Tandem_Repeat 350205 350271 89 + . . scaffold1021 TRF Tandem_Repeat 352993 353059 89 + . . scaffold1021 GLEAN mRNA 359732 361363 0.999676 - . ID=CGI_10022491; scaffold1021 TRF Tandem_Repeat 360361 360408 80 + . . scaffold1021 GLEAN promoter 361364 362363 0.999676 - . ID=CGI_10022491; scaffold1021 TRF Tandem_Repeat 365802 365906 124 + . . scaffold1021 GLEAN promoter 365978 366977 0.727737 + . ID=CGI_10022492; scaffold1021 TRF Tandem_Repeat 366155 366263 182 + . . scaffold1021 GLEAN mRNA 366978 369720 0.727737 + . ID=CGI_10022492; scaffold1021 TRF Tandem_Repeat 369942 370429 272 + . . scaffold1021 TRF Tandem_Repeat 369968 370425 817 + . . scaffold1021 WUBlastX LINE_L2 373579 373878 73 - . . scaffold1021 GLEAN promoter 374018 375017 0.999572 + . ID=CGI_10022493; scaffold1021 GLEAN mRNA 375018 382565 0.999572 + . ID=CGI_10022493; scaffold1021 GLEAN mRNA 383137 392998 0.499837 - . ID=CGI_10022494; scaffold1021 TRF Tandem_Repeat 384839 384887 98 + . . scaffold1021 TRF Tandem_Repeat 385572 386252 735 + . . scaffold1021 TRF Tandem_Repeat 388465 388503 78 + . . scaffold1021 TRF Tandem_Repeat 388948 389340 475 + . . scaffold1021 TRF Tandem_Repeat 388960 389340 548 + . . scaffold1021 GLEAN promoter 392999 393998 0.499837 - . ID=CGI_10022494; scaffold1021 GLEAN promoter 394699 395698 0.758315 + . ID=CGI_10022495; scaffold1021 TRF Tandem_Repeat 395333 395376 61 + . . scaffold1021 GLEAN mRNA 395699 397833 0.758315 + . ID=CGI_10022495; scaffold1021 TRF Tandem_Repeat 399926 399975 91 + . . scaffold1021 GLEAN mRNA 405872 411176 0.382628 - . ID=CGI_10022496; scaffold1021 TRF Tandem_Repeat 407941 407995 94 + . . scaffold1021 TRF Tandem_Repeat 408744 408918 187 + . . scaffold1021 GLEAN promoter 411177 412176 0.382628 - . ID=CGI_10022496; scaffold1021 GLEAN promoter 411469 412468 0.528485 + . ID=CGI_10022497; scaffold1021 GLEAN mRNA 412469 414079 0.528485 + . ID=CGI_10022497; scaffold1021 TRF Tandem_Repeat 415675 415731 105 + . . scaffold1021 TRF Tandem_Repeat 417468 417507 80 + . . scaffold1021 TRF Tandem_Repeat 420472 420518 94 + . . scaffold1021 GLEAN promoter 445561 446560 0.8895 + . ID=CGI_10022499; scaffold1021 GLEAN mRNA 446561 447990 0.8895 + . ID=CGI_10022499; scaffold1021 GLEAN mRNA 448242 473584 0.324995 - . ID=CGI_10022500; scaffold1021 WUBlastX LINE_CR1 451856 452254 51 + . . scaffold1021 WUBlastX LINE_L1-Tx1 451946 453664 633 + . . scaffold1021 WUBlastX LTR_Gypsy 455368 455853 28 - . . scaffold1021 TRF Tandem_Repeat 456375 456431 114 + . . scaffold1021 TRF Tandem_Repeat 456487 456513 54 + . . scaffold1021 TRF Tandem_Repeat 456581 456639 109 + . . scaffold1021 TRF Tandem_Repeat 457634 457808 219 + . . scaffold1021 TRF Tandem_Repeat 460686 460780 147 + . . scaffold1021 GLEAN promoter 473585 474584 0.324995 - . ID=CGI_10022500; scaffold1021 TRF Tandem_Repeat 475915 476018 99 + . . scaffold1021 TRF Tandem_Repeat 475915 476035 86 + . . scaffold1021 GLEAN mRNA 476874 498131 0.997038 - . ID=CGI_10022501; scaffold1021 TRF Tandem_Repeat 482224 482266 54 + . . scaffold1021 GLEAN promoter 490660 491659 0.783976 + . ID=CGI_10022502; scaffold1021 GLEAN mRNA 491660 511009 0.783976 + . ID=CGI_10022502; scaffold1021 GLEAN promoter 498132 499131 0.997038 - . ID=CGI_10022501; scaffold1021 TRF Tandem_Repeat 504586 504699 86 + . . scaffold1021 TRF Tandem_Repeat 513149 513197 57 + . . scaffold1021 TRF Tandem_Repeat 513366 514197 1202 + . . scaffold1021 TRF Tandem_Repeat 515001 515027 54 + . . scaffold1021 TRF Tandem_Repeat 520207 520244 76 + . . scaffold1021 TRF Tandem_Repeat 522781 522834 108 + . . scaffold1021 TRF Tandem_Repeat 526098 526175 147 + . . scaffold1021 TRF Tandem_Repeat 526336 526382 87 + . . scaffold1021 TRF Tandem_Repeat 528803 528832 60 + . . scaffold1021 TRF Tandem_Repeat 533160 533234 150 + . . scaffold1021 TRF Tandem_Repeat 540335 540406 144 + . . scaffold1021 TRF Tandem_Repeat 543662 543714 106 + . . scaffold1021 TRF Tandem_Repeat 544215 544272 116 + . . scaffold1021 TRF Tandem_Repeat 544522 544577 112 + . . scaffold1021 TRF Tandem_Repeat 547170 547215 92 + . . scaffold1021 WUBlastX LINE_RTE-X 548738 548839 20 - . . scaffold1021 WUBlastX LINE_RTE-X 548884 549600 82 - . . scaffold1021 WUBlastX LINE_RTE-X 549049 550101 275 - . . scaffold1021 WUBlastX LINE_CR1 549664 550203 71 - . . scaffold1021 WUBlastX LINE_L1 550252 550455 130 - . . scaffold1021 WUBlastX LINE_L2 550267 550572 50 - . . scaffold1021 WUBlastX LINE_L2 550270 550488 56 - . . scaffold1021 TRF Tandem_Repeat 551317 551372 112 + . . scaffold1021 GLEAN promoter 557577 558576 0.761174 + . ID=CGI_10022503; scaffold1021 GLEAN mRNA 558577 564774 0.761174 + . ID=CGI_10022503; scaffold1021 TRF Tandem_Repeat 562631 562760 98 + . . scaffold1021 TRF Tandem_Repeat 571677 571730 67 + . . scaffold1021 TRF Tandem_Repeat 571680 571725 67 + . . scaffold1021 GLEAN mRNA 573402 587681 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LTR_Pao 581251 581544 245 - . . scaffold1021 WUBlastX LTR_Pao 581544 583004 1070 - . . scaffold1021 WUBlastX LTR_Pao 582606 585029 1584 - . . scaffold1021 WUBlastX LTR_Pao 585552 586595 274 - . . scaffold1021 WUBlastX LTR_Pao 586892 587539 20 - . . scaffold1021 WUBlastX LTR_Pao 586970 587278 24 - . . scaffold1021 GLEAN promoter 587682 588681 0.999217 - . ID=CGI_10022504; scaffold1021 WUBlastX LINE_L1 592474 592782 73 - . . scaffold1021 WUBlastX LINE_L1 592495 592752 108 - . . scaffold1021 WUBlastX LINE_L1-Tx1 592739 592846 41 - . . scaffold1021 WUBlastX LINE_L1-Tx1 592739 592807 55 - . . scaffold1021 GLEAN mRNA 594036 595655 1 - . ID=CGI_10022505; scaffold1021 GLEAN promoter 595656 596655 1 - . ID=CGI_10022505; scaffold1021 TRF Tandem_Repeat 616816 616866 58 + . . scaffold1021 TRF Tandem_Repeat 616822 616866 54 + . . scaffold1021 WUBlastX LINE_L1-Tx1 617672 617899 23 - . . scaffold1021 TRF Tandem_Repeat 620364 620490 227 + . . scaffold1021 WUBlastX LINE_L2 666288 666647 34 - . . scaffold1021 WUBlastX LINE_L2 666423 666662 50 - . . scaffold1021 TRF Tandem_Repeat 670369 671577 1255 + . . scaffold1021 TRF Tandem_Repeat 685688 686725 1464 + . . scaffold1021 GLEAN promoter 691304 692303 0.992587 + . ID=CGI_10022506; scaffold1021 GLEAN mRNA 692304 699453 0.992587 + . ID=CGI_10022506; scaffold1021 WUBlastX RC_Helitron 692550 693317 295 + . . scaffold1021 WUBlastX RC_Helitron 693370 694071 193 + . . scaffold1021 WUBlastX RC_Helitron 693481 694107 207 + . . scaffold1021 WUBlastX RC_Helitron 694086 695504 553 + . . scaffold1021 WUBlastX RC_Helitron 695388 695723 208 + . . scaffold1021 WUBlastX RC_Helitron 695721 696686 433 + . . scaffold1021 WUBlastX LINE_L2 695949 696938 70 + . . scaffold1021 WUBlastX LINE_CR1 697145 697315 20 + . . scaffold1021 WUBlastX LINE_CR1-L2 705191 705376 53 + . . scaffold1021 WUBlastX LINE_CR1 705357 705452 22 + . . scaffold1021 WUBlastX LINE_L2 705466 705933 148 + . . scaffold1021 WUBlastX LINE_L2 705681 706349 26 + . . scaffold1021 WUBlastX LINE_L2 706284 706547 28 + . . scaffold1021 WUBlastX LINE_L2 706383 706553 43 + . . scaffold1021 WUBlastX LINE_L2 706581 706919 33 + . . scaffold1021 WUBlastX LINE_L2 706680 706760 47 + . . scaffold1021 WUBlastX LINE_L2 706689 707120 41 + . . scaffold1021 WUBlastX LINE_L2 706745 707008 67 + . . scaffold1021 TRF Tandem_Repeat 707468 707713 230 + . . scaffold1021 TRF Tandem_Repeat 707468 707717 200 + . . scaffold1021 GLEAN mRNA 708236 710692 0.999981 - . ID=CGI_10022507; scaffold1021 GLEAN promoter 710693 711692 0.999981 - . ID=CGI_10022507; scaffold1021 GLEAN mRNA 718348 732554 0.811709 - . ID=CGI_10022508; scaffold1021 GLEAN promoter 732555 733554 0.811709 - . ID=CGI_10022508; scaffold1021 WUBlastX LINE_RTE-X 741719 742201 73 + . . scaffold1021 WUBlastX LINE_CR1 745951 746307 26 + . . scaffold1021 WUBlastX LINE_L2 746019 746117 59 + . . scaffold1021 WUBlastX LINE_CR1-L2 746041 746289 122 + . . scaffold1021 WUBlastX LINE_CR1-L2 746125 746307 124 + . . scaffold1021 WUBlastX LINE_L2 746152 746337 82 + . . scaffold1021 WUBlastX LINE_L2 746333 746551 45 + . . scaffold1021 GLEAN promoter 755485 756484 0.999546 + . ID=CGI_10022509; scaffold1021 GLEAN mRNA 756485 760980 0.999546 + . ID=CGI_10022509; scaffold1024 GLEAN mRNA 216 21998 0.996423 - . ID=CGI_10028517; scaffold1024 TRF Tandem_Repeat 1982 2029 96 + . . scaffold1024 TRF Tandem_Repeat 7646 8072 547 + . . scaffold1024 TRF Tandem_Repeat 18755 18802 51 + . . scaffold1024 WUBlastX LINE_CR1-L2 20187 22037 963 - . . scaffold1024 GLEAN promoter 21999 22998 0.996423 - . ID=CGI_10028517; scaffold1024 WUBlastX LINE_CR1-L2 22058 22498 208 - . . scaffold1024 WUBlastX LINE_L2 22521 23147 219 - . . scaffold1024 WUBlastX LINE_Jockey 22878 23234 42 - . . scaffold1024 WUBlastX LINE_L2 23357 23464 20 - . . scaffold1024 WUBlastX LINE_L2 24187 24510 101 - . . scaffold1024 GLEAN mRNA 24193 35895 0.99814 - . ID=CGI_10028518; scaffold1024 TRF Tandem_Repeat 32169 32202 52 + . . scaffold1024 TRF Tandem_Repeat 33437 33500 101 + . . scaffold1024 TRF Tandem_Repeat 33613 33656 70 + . . scaffold1024 TRF Tandem_Repeat 33805 33853 89 + . . scaffold1024 GLEAN promoter 35896 36895 0.99814 - . ID=CGI_10028518; scaffold1024 TRF Tandem_Repeat 40336 40377 50 + . . scaffold1024 TRF Tandem_Repeat 42966 43191 210 + . . scaffold1024 TRF Tandem_Repeat 42994 43191 333 + . . scaffold1024 WUBlastX LTR_Gypsy 64047 64325 139 - . . scaffold1024 WUBlastX LTR_Gypsy 64056 64286 243 - . . scaffold1024 TRF Tandem_Repeat 64369 64403 52 + . . scaffold1024 TRF Tandem_Repeat 68050 68079 51 + . . scaffold1024 GLEAN promoter 69811 70810 0.389681 + . ID=CGI_10028519; scaffold1024 WUBlastX LINE_CR1 70775 71029 195 + . . scaffold1024 GLEAN mRNA 70811 87216 0.389681 + . ID=CGI_10028519; scaffold1024 WUBlastX LINE_Jockey 71031 71579 128 + . . scaffold1024 WUBlastX LINE_CR1 71118 72401 1021 + . . scaffold1024 WUBlastX RC_Helitron 81368 81586 64 - . . scaffold1024 GLEAN mRNA 87362 100892 0.557329 - . ID=CGI_10028520; scaffold1024 TRF Tandem_Repeat 90126 90173 69 + . . scaffold1024 WUBlastX LTR_Gypsy 92033 92335 22 - . . scaffold1024 WUBlastX DNA_Maverick 97131 97394 65 + . . scaffold1024 WUBlastX DNA_Zator 97818 98165 135 + . . scaffold1024 GLEAN promoter 100893 101892 0.557329 - . ID=CGI_10028520; scaffold1024 GLEAN promoter 101925 102924 0.362589 + . ID=CGI_10028522; scaffold1024 GLEAN mRNA 102925 106353 0.362589 + . ID=CGI_10028522; scaffold1024 TRF Tandem_Repeat 108683 109566 1149 + . . scaffold1024 TRF Tandem_Repeat 110883 111136 375 + . . scaffold1024 WUBlastX RC_Helitron 122328 122621 133 + . . scaffold1024 WUBlastX RC_Helitron 122373 122600 188 + . . scaffold1024 GLEAN mRNA 124695 135408 0.992138 - . ID=CGI_10028523; scaffold1024 WUBlastX DNA_hAT-Hobo 135326 135682 20 + . . scaffold1024 GLEAN promoter 135409 136408 0.992138 - . ID=CGI_10028523; scaffold1024 WUBlastX DNA_hAT-Hobo 135515 135679 98 + . . scaffold1024 GLEAN promoter 138034 139033 0.990975 + . ID=CGI_10028524; scaffold1024 GLEAN mRNA 139034 140963 0.990975 + . ID=CGI_10028524; scaffold1024 WUBlastX DNA_Maverick 142816 143037 32 - . . scaffold1024 GLEAN mRNA 143203 143478 1 - . ID=CGI_10028525; scaffold1024 GLEAN promoter 143479 144478 1 - . ID=CGI_10028525; scaffold1024 WUBlastX DNA_En-Spm 150670 150819 78 - . . scaffold1024 WUBlastX DNA_En-Spm 150840 151853 565 - . . scaffold1024 GLEAN promoter 154163 155162 0.999927 + . ID=CGI_10028527; scaffold1024 WUBlastX LTR_Gypsy 154802 155107 35 + . . scaffold1024 GLEAN mRNA 155163 156509 0.999927 + . ID=CGI_10028527; scaffold1024 WUBlastX LTR_Pao 156999 158126 332 + . . scaffold1024 WUBlastX LTR_Pao 157218 158207 385 + . . scaffold1024 WUBlastX LTR_Pao 157521 158153 387 + . . scaffold1024 WUBlastX LTR_Pao 158078 159628 945 + . . scaffold1024 WUBlastX LTR_Pao 159416 159667 24 + . . scaffold1024 WUBlastX LTR_Pao 159913 159957 22 + . . scaffold1024 WUBlastX LTR_Pao 160406 160531 26 + . . scaffold1024 WUBlastX LTR_Pao 160489 161055 105 + . . scaffold1024 WUBlastX LTR_Pao 160588 161058 515 + . . scaffold1024 WUBlastX LTR_Pao 161040 163559 1973 + . . scaffold1024 WUBlastX DNA_Sola 169811 169873 43 - . . scaffold1024 WUBlastX DNA_Sola 170142 170354 33 - . . scaffold1024 WUBlastX DNA_Sola 170522 170614 20 - . . scaffold1024 WUBlastX DNA_TcMar-Marin 185595 185639 24 - . . scaffold1024 WUBlastX DNA_TcMar-Marin 185707 185778 24 - . . scaffold1024 WUBlastX DNA_TcMar-Marin 186273 186431 36 - . . scaffold1024 WUBlastX DNA_TcMar-Marin 186279 186392 50 - . . scaffold1024 TRF Tandem_Repeat 187523 187559 74 + . . scaffold1024 GLEAN promoter 190784 191783 0.99909 + . ID=CGI_10028528; scaffold1024 GLEAN mRNA 191784 246938 0.99909 + . ID=CGI_10028528; scaffold1024 TRF Tandem_Repeat 192548 192607 111 + . . scaffold1024 TRF Tandem_Repeat 194525 195262 1086 + . . scaffold1024 TRF Tandem_Repeat 195473 195503 53 + . . scaffold1024 TRF Tandem_Repeat 206377 206519 214 + . . scaffold1024 TRF Tandem_Repeat 220100 220142 86 + . . scaffold1024 WUBlastX DNA_TcMar-Tc1 222421 222519 34 - . . scaffold1024 WUBlastX DNA_TcMar-Tc1 222436 222534 46 - . . scaffold1024 WUBlastX DNA_TcMar-Tc1 223040 223327 97 - . . scaffold1024 WUBlastX DNA_TcMar-Tc1 223160 223306 107 - . . scaffold1024 WUBlastX DNA_TcMar-Tc1 223342 224070 133 - . . scaffold1024 TRF Tandem_Repeat 242336 242376 82 + . . scaffold1024 GLEAN mRNA 251261 271480 0.999675 - . ID=CGI_10028529; scaffold1024 WUBlastX DNA_TcMar-Tc1 262743 263018 59 - . . scaffold1024 WUBlastX DNA_TcMar-Tc1 262911 263018 70 - . . scaffold1024 GLEAN promoter 271481 272480 0.999675 - . ID=CGI_10028529; scaffold1024 GLEAN mRNA 273637 276162 0.999661 - . ID=CGI_10028530; scaffold1024 GLEAN promoter 274165 275164 0.999351 + . ID=CGI_10028531; scaffold1024 GLEAN mRNA 275165 281463 0.999351 + . ID=CGI_10028531; scaffold1024 GLEAN promoter 276163 277162 0.999661 - . ID=CGI_10028530; scaffold1024 GLEAN mRNA 286016 307543 0.666664 - . ID=CGI_10028532; scaffold1024 WUBlastX DNA_Kolobok 289749 289997 110 + . . scaffold1024 TRF Tandem_Repeat 292205 292324 65 + . . scaffold1024 WUBlastX DNA_Kolobok 292995 293183 37 - . . scaffold1024 WUBlastX DNA_Kolobok 293079 293225 26 - . . scaffold1024 WUBlastX DNA_Kolobok 293810 294013 62 - . . scaffold1024 WUBlastX DNA_Kolobok 295182 295469 71 - . . scaffold1024 WUBlastX DNA_Kolobok 295830 296171 101 - . . scaffold1024 GLEAN promoter 307544 308543 0.666664 - . ID=CGI_10028532; scaffold1024 TRF Tandem_Repeat 314021 314299 450 + . . scaffold1024 TRF Tandem_Repeat 325052 325100 98 + . . scaffold1024 TRF Tandem_Repeat 332964 333024 113 + . . scaffold1024 TRF Tandem_Repeat 339389 339482 179 + . . scaffold1024 TRF Tandem_Repeat 358722 358787 132 + . . scaffold1024 TRF Tandem_Repeat 361160 361255 142 + . . scaffold1024 WUBlastX LTR_Ngaro 369364 369657 181 + . . scaffold1024 TRF Tandem_Repeat 369666 369742 72 + . . scaffold1024 TRF Tandem_Repeat 370527 370617 86 + . . scaffold1024 TRF Tandem_Repeat 371402 371492 86 + . . scaffold1024 TRF Tandem_Repeat 372277 372367 86 + . . scaffold1024 GLEAN mRNA 376695 381474 1 - . ID=CGI_10028533; scaffold1024 GLEAN promoter 381475 382474 1 - . ID=CGI_10028533; scaffold1024 TRF Tandem_Repeat 382655 382712 109 + . . scaffold1024 TRF Tandem_Repeat 385382 385425 88 + . . scaffold1024 TRF Tandem_Repeat 410019 410067 98 + . . scaffold1024 GLEAN mRNA 423604 454148 0.990168 - . ID=CGI_10028534; scaffold1024 TRF Tandem_Repeat 448652 448682 62 + . . scaffold1024 TRF Tandem_Repeat 452366 452486 118 + . . scaffold1024 GLEAN promoter 454149 455148 0.990168 - . ID=CGI_10028534; scaffold1024 TRF Tandem_Repeat 455345 455437 89 + . . scaffold1024 TRF Tandem_Repeat 455345 455436 86 + . . scaffold1024 TRF Tandem_Repeat 455354 455436 71 + . . scaffold1024 TRF Tandem_Repeat 455473 455925 734 + . . scaffold1024 GLEAN promoter 455648 456647 0.933824 + . ID=CGI_10028535; scaffold1024 GLEAN mRNA 456648 496472 0.933824 + . ID=CGI_10028535; scaffold1024 TRF Tandem_Repeat 459871 459908 53 + . . scaffold1024 TRF Tandem_Repeat 464602 464661 63 + . . scaffold1024 TRF Tandem_Repeat 464692 465486 1117 + . . scaffold1024 TRF Tandem_Repeat 473418 473448 62 + . . scaffold1024 GLEAN mRNA 484809 485558 0.67715 - . ID=CGI_10028536; scaffold1024 GLEAN promoter 485559 486558 0.67715 - . ID=CGI_10028536; scaffold1024 TRF Tandem_Repeat 487485 488184 1025 + . . scaffold1024 GLEAN mRNA 505545 510050 0.999949 - . ID=CGI_10028537; scaffold1024 TRF Tandem_Repeat 509782 509838 114 + . . scaffold1024 GLEAN promoter 510051 511050 0.999949 - . ID=CGI_10028537; scaffold1024 TRF Tandem_Repeat 515890 515924 54 + . . scaffold1024 TRF Tandem_Repeat 557718 557777 51 + . . scaffold1024 TRF Tandem_Repeat 563731 563783 106 + . . scaffold1024 WUBlastX DNA_IS4EU 565039 565542 108 + . . scaffold1024 GLEAN promoter 571728 572727 0.729153 + . ID=CGI_10028538; scaffold1024 GLEAN mRNA 572728 587346 0.729153 + . ID=CGI_10028538; scaffold1024 TRF Tandem_Repeat 573301 573349 66 + . . scaffold1024 TRF Tandem_Repeat 573302 573343 84 + . . scaffold1024 TRF Tandem_Repeat 577225 577541 431 + . . scaffold1024 TRF Tandem_Repeat 582140 582205 125 + . . scaffold1024 TRF Tandem_Repeat 589938 590689 390 + . . scaffold1024 TRF Tandem_Repeat 589979 590637 463 + . . scaffold1024 TRF Tandem_Repeat 589985 590660 117 + . . scaffold1024 TRF Tandem_Repeat 589999 590672 235 + . . scaffold1024 GLEAN promoter 592252 593251 0.992443 + . ID=CGI_10028539; scaffold1024 GLEAN mRNA 593252 613732 0.992443 + . ID=CGI_10028539; scaffold1024 TRF Tandem_Repeat 598051 598150 193 + . . scaffold1024 TRF Tandem_Repeat 600020 600063 88 + . . scaffold1024 TRF Tandem_Repeat 601482 601538 96 + . . scaffold1024 GLEAN mRNA 603003 609094 0.863829 - . ID=CGI_10028540; scaffold1024 GLEAN promoter 609095 610094 0.863829 - . ID=CGI_10028540; scaffold1024 TRF Tandem_Repeat 615187 615373 123 + . . scaffold1024 TRF Tandem_Repeat 615219 615369 159 + . . scaffold1024 TRF Tandem_Repeat 617136 617610 286 + . . scaffold1024 TRF Tandem_Repeat 620089 620344 275 + . . scaffold1024 TRF Tandem_Repeat 620986 621059 66 + . . scaffold1024 TRF Tandem_Repeat 620989 621053 75 + . . scaffold1024 TRF Tandem_Repeat 629626 629651 52 + . . scaffold1024 TRF Tandem_Repeat 641456 643519 1998 + . . scaffold1024 TRF Tandem_Repeat 646250 646977 907 + . . scaffold1024 TRF Tandem_Repeat 647724 647879 249 + . . scaffold1024 TRF Tandem_Repeat 647885 648488 709 + . . scaffold1024 TRF Tandem_Repeat 647972 648046 61 + . . scaffold1024 GLEAN promoter 653180 654179 0.738561 + . ID=CGI_10028541; scaffold1024 GLEAN mRNA 654180 658322 0.738561 + . ID=CGI_10028541; scaffold1024 TRF Tandem_Repeat 654958 654982 50 + . . scaffold1024 GLEAN mRNA 661256 689203 0.701647 - . ID=CGI_10028542; scaffold1024 WUBlastX LTR_Gypsy 677793 677915 20 - . . scaffold1024 WUBlastX LTR_Gypsy 681482 681706 38 - . . scaffold1024 WUBlastX LTR_Gypsy 682225 682350 22 - . . scaffold1024 GLEAN promoter 689204 690203 0.701647 - . ID=CGI_10028542; scaffold1024 TRF Tandem_Repeat 709079 709144 132 + . . scaffold1024 TRF Tandem_Repeat 714555 714619 130 + . . scaffold1024 GLEAN mRNA 716107 718200 0.99357 - . ID=CGI_10028543; scaffold1024 GLEAN promoter 718201 719200 0.99357 - . ID=CGI_10028543; scaffold1024 TRF Tandem_Repeat 718249 719529 718 + . . scaffold1024 TRF Tandem_Repeat 718311 719081 802 + . . scaffold1024 TRF Tandem_Repeat 718705 719379 478 + . . scaffold1024 GLEAN promoter 721637 722636 0.999988 + . ID=CGI_10028544; scaffold1024 GLEAN mRNA 722637 724634 0.999988 + . ID=CGI_10028544; scaffold1024 TRF Tandem_Repeat 727615 727676 124 + . . scaffold1024 GLEAN mRNA 730047 743598 0.998335 - . ID=CGI_10028545; scaffold1024 TRF Tandem_Repeat 736458 736912 802 + . . scaffold1024 TRF Tandem_Repeat 736468 736651 69 + . . scaffold1024 GLEAN promoter 742406 743405 0.69481 + . ID=CGI_10028546; scaffold1024 GLEAN mRNA 743406 752728 0.69481 + . ID=CGI_10028546; scaffold1024 GLEAN promoter 743599 744598 0.998335 - . ID=CGI_10028545; scaffold1024 TRF Tandem_Repeat 769257 769302 92 + . . scaffold1024 GLEAN mRNA 777399 790331 0.990769 - . ID=CGI_10028547; scaffold1024 GLEAN promoter 790332 791331 0.990769 - . ID=CGI_10028547; scaffold1024 TRF Tandem_Repeat 798107 798131 50 + . . scaffold1024 WUBlastX DNA_Sola 799859 800221 36 + . . scaffold1024 WUBlastX DNA_Sola 800051 800221 46 + . . scaffold1024 WUBlastX DNA_Sola 803845 805458 791 + . . scaffold1024 TRF Tandem_Repeat 808420 808593 131 + . . scaffold1024 TRF Tandem_Repeat 808487 808592 117 + . . scaffold1024 TRF Tandem_Repeat 808848 809257 525 + . . scaffold1024 TRF Tandem_Repeat 809449 809492 88 + . . scaffold1024 TRF Tandem_Repeat 810725 811362 705 + . . scaffold1024 GLEAN mRNA 817317 823057 0.741074 - . ID=CGI_10028548; scaffold1024 TRF Tandem_Repeat 819786 819810 50 + . . scaffold1024 GLEAN promoter 823058 824057 0.741074 - . ID=CGI_10028548; scaffold1024 TRF Tandem_Repeat 830731 830757 54 + . . scaffold1024 TRF Tandem_Repeat 831895 832780 1127 + . . scaffold1024 TRF Tandem_Repeat 839505 839559 83 + . . scaffold1024 TRF Tandem_Repeat 841345 841398 108 + . . scaffold1024 GLEAN promoter 848071 849070 1 + . ID=CGI_10028549; scaffold1024 GLEAN mRNA 849071 854037 1 + . ID=CGI_10028549; scaffold1024 TRF Tandem_Repeat 849266 849297 64 + . . scaffold1024 TRF Tandem_Repeat 851249 851760 618 + . . scaffold1024 TRF Tandem_Repeat 851311 851780 127 + . . scaffold1024 TRF Tandem_Repeat 851668 852007 202 + . . scaffold1024 TRF Tandem_Repeat 852061 852090 60 + . . scaffold1024 GLEAN mRNA 856279 860835 1 - . ID=CGI_10028550; scaffold1024 GLEAN promoter 860836 861835 1 - . ID=CGI_10028550; scaffold1024 TRF Tandem_Repeat 861879 862072 146 + . . scaffold1024 WUBlastX LINE_RTE-X 863990 864226 26 + . . scaffold1024 WUBlastX LINE_RTE-X 864062 864226 84 + . . scaffold1024 WUBlastX LINE_RTE-X 864196 864333 50 + . . scaffold1024 WUBlastX LINE_RTE-X 864199 864489 21 + . . scaffold1024 TRF Tandem_Repeat 865065 865148 159 + . . scaffold1024 GLEAN promoter 866103 867102 0.998162 + . ID=CGI_10028551; scaffold1024 GLEAN mRNA 867103 878112 0.998162 + . ID=CGI_10028551; scaffold1024 TRF Tandem_Repeat 869229 869285 114 + . . scaffold1024 WUBlastX LTR_Gypsy 885832 887229 831 - . . scaffold1024 WUBlastX LINE_L1-Tx1 895201 896358 357 - . . scaffold1024 GLEAN mRNA 896685 896963 0.999372 - . ID=CGI_10028552; scaffold1024 WUBlastX LINE_CR1 896943 897038 24 - . . scaffold1024 GLEAN promoter 896964 897963 0.999372 - . ID=CGI_10028552; scaffold1024 WUBlastX LINE_CR1 897151 897939 203 - . . scaffold1024 WUBlastX LINE_L2 901317 901952 85 + . . scaffold1024 WUBlastX LINE_L1-Tx1 901416 901958 329 + . . scaffold1024 WUBlastX LINE_L1-Tx1 901895 903010 337 + . . scaffold1024 WUBlastX LINE_L1-Tx1 907213 907725 140 + . . scaffold1024 WUBlastX LINE_L1-Tx1 907743 908027 45 + . . scaffold1024 TRF Tandem_Repeat 912964 913012 55 + . . scaffold1024 TRF Tandem_Repeat 912974 913024 66 + . . scaffold1024 TRF Tandem_Repeat 913651 913685 52 + . . scaffold1024 GLEAN mRNA 916200 928788 0.333189 - . ID=CGI_10028553; scaffold1024 TRF Tandem_Repeat 919037 919088 104 + . . scaffold1024 GLEAN promoter 928789 929788 0.333189 - . ID=CGI_10028553; scaffold1024 TRF Tandem_Repeat 948633 948699 89 + . . scaffold1024 TRF Tandem_Repeat 949195 949242 96 + . . scaffold1024 TRF Tandem_Repeat 949240 949270 62 + . . scaffold1024 TRF Tandem_Repeat 951677 951743 89 + . . scaffold1024 TRF Tandem_Repeat 959694 959749 112 + . . scaffold1024 TRF Tandem_Repeat 960345 960392 89 + . . scaffold1024 TRF Tandem_Repeat 960993 961099 142 + . . scaffold1024 TRF Tandem_Repeat 962689 962834 94 + . . scaffold1024 TRF Tandem_Repeat 962744 962834 146 + . . scaffold1024 GLEAN mRNA 966021 966407 0.999991 - . ID=CGI_10028554; scaffold1024 GLEAN promoter 966408 967407 0.999991 - . ID=CGI_10028554; scaffold1024 GLEAN mRNA 986108 994171 0.999235 - . ID=CGI_10028555; scaffold1024 TRF Tandem_Repeat 987864 987907 52 + . . scaffold1024 TRF Tandem_Repeat 987865 987916 59 + . . scaffold1024 TRF Tandem_Repeat 987865 987916 59 + . . scaffold1024 WUBlastX LTR_Gypsy 989654 989707 20 + . . scaffold1024 WUBlastX LTR_Gypsy 989733 989852 23 + . . scaffold1024 WUBlastX LTR_Gypsy 990126 990341 55 + . . scaffold1024 WUBlastX LTR_Gypsy 990242 990862 150 + . . scaffold1024 WUBlastX LTR_Gypsy 990326 990838 252 + . . scaffold1024 WUBlastX LTR_Gypsy 990852 991427 201 + . . scaffold1024 TRF Tandem_Repeat 991917 991957 82 + . . scaffold1024 GLEAN promoter 994172 995171 0.999235 - . ID=CGI_10028555; scaffold1024 WUBlastX LINE_Penelope 994725 994883 28 - . . scaffold1024 WUBlastX LINE_Penelope 995203 995364 46 - . . scaffold1024 TRF Tandem_Repeat 999133 999174 84 + . . scaffold1024 TRF Tandem_Repeat 1000113 1000169 96 + . . scaffold1024 TRF Tandem_Repeat 1004656 1004695 53 + . . scaffold1024 WUBlastX LINE_L1 1010797 1011255 24 - . . scaffold1024 WUBlastX LINE_L1-Tx1 1010887 1011273 105 - . . scaffold1024 TRF Tandem_Repeat 1018966 1018997 64 + . . scaffold1024 GLEAN promoter 1025447 1026446 0.999572 + . ID=CGI_10028556; scaffold1024 TRF Tandem_Repeat 1025579 1025607 51 + . . scaffold1024 GLEAN mRNA 1026447 1034351 0.999572 + . ID=CGI_10028556; scaffold1024 TRF Tandem_Repeat 1032558 1032642 125 + . . scaffold1024 TRF Tandem_Repeat 1032687 1032720 68 + . . scaffold1024 TRF Tandem_Repeat 1032840 1032900 72 + . . scaffold1024 TRF Tandem_Repeat 1035590 1035631 84 + . . scaffold1024 TRF Tandem_Repeat 1036847 1037209 377 + . . scaffold1024 TRF Tandem_Repeat 1036847 1037198 398 + . . scaffold1024 TRF Tandem_Repeat 1036847 1036982 191 + . . scaffold1024 TRF Tandem_Repeat 1036983 1037198 290 + . . scaffold1024 GLEAN mRNA 1037899 1039929 0.994137 - . ID=CGI_10028557; scaffold1024 TRF Tandem_Repeat 1038722 1038748 54 + . . scaffold1024 GLEAN promoter 1039930 1040929 0.994137 - . ID=CGI_10028557; scaffold1024 GLEAN mRNA 1040025 1043027 0.99219 - . ID=CGI_10028558; scaffold1024 GLEAN promoter 1042894 1043893 0.999027 + . ID=CGI_10028559; scaffold1024 GLEAN promoter 1043028 1044027 0.99219 - . ID=CGI_10028558; scaffold1024 GLEAN mRNA 1043894 1053686 0.999027 + . ID=CGI_10028559; scaffold1024 GLEAN promoter 1055246 1056245 0.776794 + . ID=CGI_10028560; scaffold1024 WUBlastX DNA_PiggyBac 1055479 1055625 27 - . . scaffold1024 WUBlastX DNA_PiggyBac 1055690 1055926 70 - . . scaffold1024 WUBlastX DNA_PiggyBac 1055768 1056043 67 - . . scaffold1024 WUBlastX DNA_PiggyBac 1056091 1056201 30 - . . scaffold1024 GLEAN mRNA 1056246 1056467 0.776794 + . ID=CGI_10028560; scaffold1024 WUBlastX DNA_TcMar-Tc2 1057577 1058050 110 - . . scaffold1024 WUBlastX LINE_RTE-X 1058443 1058673 110 - . . scaffold1024 WUBlastX LINE_RTE-X 1058691 1058963 25 - . . scaffold1024 WUBlastX LINE_RTE-X 1058987 1059058 21 - . . scaffold1024 WUBlastX DNA_PiggyBac 1059834 1060631 100 - . . scaffold1024 WUBlastX DNA_PiggyBac 1059834 1060508 323 - . . scaffold1024 WUBlastX DNA_PiggyBac 1060734 1061144 37 - . . scaffold1024 WUBlastX DNA_PiggyBac 1060860 1061132 131 - . . scaffold1024 WUBlastX DNA_PiggyBac 1060899 1061210 107 - . . scaffold1024 GLEAN mRNA 1066376 1066972 0.999984 - . ID=CGI_10028561; scaffold1024 GLEAN promoter 1066973 1067972 0.999984 - . ID=CGI_10028561; scaffold1024 GLEAN mRNA 1067411 1070428 0.977799 - . ID=CGI_10028562; scaffold1024 WUBlastX DNA_PiggyBac 1067771 1068895 612 - . . scaffold1024 WUBlastX DNA_PiggyBac 1067771 1069135 363 - . . scaffold1024 GLEAN promoter 1070429 1071428 0.977799 - . ID=CGI_10028562; scaffold1024 GLEAN mRNA 1070619 1077233 0.9551 - . ID=CGI_10028563; scaffold1024 TRF Tandem_Repeat 1072075 1072109 70 + . . scaffold1024 WUBlastX DNA_PiggyBac 1073333 1073542 80 - . . scaffold1024 WUBlastX DNA_PiggyBac 1074626 1074850 66 - . . scaffold1024 WUBlastX DNA_PiggyBac 1074662 1074892 133 - . . scaffold1024 WUBlastX DNA_PiggyBac 1074859 1075104 82 - . . scaffold1024 WUBlastX DNA_PiggyBac 1075420 1075530 32 - . . scaffold1024 WUBlastX DNA_PiggyBac 1076105 1076257 72 - . . scaffold1024 WUBlastX DNA_PiggyBac 1076144 1076266 109 - . . scaffold1024 WUBlastX DNA_PiggyBac 1076265 1076507 90 - . . scaffold1024 WUBlastX DNA_PiggyBac 1076280 1076549 37 - . . scaffold1024 GLEAN promoter 1077234 1078233 0.9551 - . ID=CGI_10028563; scaffold1024 GLEAN mRNA 1077934 1078236 0.999996 - . ID=CGI_10028564; scaffold1024 GLEAN promoter 1078237 1079236 0.999996 - . ID=CGI_10028564; scaffold1024 GLEAN mRNA 1078261 1083838 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX DNA_PiggyBac 1079083 1079412 64 - . . scaffold1024 WUBlastX DNA_PiggyBac 1079158 1079424 65 - . . scaffold1024 WUBlastX DNA_TcMar-Tc1 1079920 1080114 30 - . . scaffold1024 WUBlastX DNA_TcMar-Tc1 1080104 1080166 41 - . . scaffold1024 WUBlastX DNA_PiggyBac 1080178 1080270 56 - . . scaffold1024 WUBlastX DNA_PiggyBac 1080212 1080499 97 - . . scaffold1024 WUBlastX DNA_PiggyBac 1080266 1080541 90 - . . scaffold1024 WUBlastX DNA_PiggyBac 1080272 1080607 39 - . . scaffold1024 WUBlastX LTR_Ngaro 1081145 1081339 42 - . . scaffold1024 GLEAN promoter 1083839 1084838 0.826098 - . ID=CGI_10028565; scaffold1024 WUBlastX LTR_Ngaro 1084482 1085570 335 - . . scaffold1024 WUBlastX DNA_PiggyBac 1086780 1086881 77 - . . scaffold1024 WUBlastX LTR_Ngaro 1087564 1087932 63 - . . scaffold1024 WUBlastX LTR_Ngaro 1087600 1087857 82 - . . scaffold1024 WUBlastX DNA_En-Spm 1089139 1089600 63 - . . scaffold1024 WUBlastX DNA_En-Spm 1089328 1089612 65 - . . scaffold1024 GLEAN promoter 1096190 1097189 0.470618 + . ID=CGI_10028566; scaffold1024 GLEAN mRNA 1097190 1105471 0.470618 + . ID=CGI_10028566; scaffold1024 TRF Tandem_Repeat 1104822 1104887 123 + . . scaffold1024 TRF Tandem_Repeat 1105059 1105093 52 + . . scaffold1024 GLEAN mRNA 1110138 1112386 0.836238 - . ID=CGI_10028568; scaffold1024 GLEAN promoter 1111754 1112753 0.704183 + . ID=CGI_10028569; scaffold1024 GLEAN promoter 1112387 1113386 0.836238 - . ID=CGI_10028568; scaffold1024 GLEAN mRNA 1112754 1144737 0.704183 + . ID=CGI_10028569; scaffold1024 TRF Tandem_Repeat 1127045 1127081 58 + . . scaffold1024 TRF Tandem_Repeat 1134668 1134862 291 + . . scaffold1024 TRF Tandem_Repeat 1136771 1137225 531 + . . scaffold1024 TRF Tandem_Repeat 1139331 1139426 63 + . . scaffold1024 TRF Tandem_Repeat 1139367 1139523 68 + . . scaffold1024 TRF Tandem_Repeat 1139414 1139497 50 + . . scaffold1024 WUBlastX LINE_L1-Tx1 1140780 1140971 41 + . . scaffold1024 WUBlastX LINE_L1 1142064 1142189 21 + . . scaffold1024 TRF Tandem_Repeat 1143251 1143320 119 + . . scaffold1024 GLEAN mRNA 1145944 1149627 0.999985 - . ID=CGI_10028570; scaffold1024 GLEAN promoter 1148759 1149758 0.829164 + . ID=CGI_10028571; scaffold1024 GLEAN promoter 1149628 1150627 0.999985 - . ID=CGI_10028570; scaffold1024 GLEAN mRNA 1149759 1163486 0.829164 + . ID=CGI_10028571; scaffold1024 TRF Tandem_Repeat 1151832 1152111 323 + . . scaffold1024 TRF Tandem_Repeat 1152378 1153106 494 + . . scaffold1024 TRF Tandem_Repeat 1160202 1160240 78 + . . scaffold1024 TRF Tandem_Repeat 1160485 1160553 138 + . . scaffold1024 WUBlastX LINE_RTE-BovB 1164842 1165162 82 + . . scaffold1024 WUBlastX LINE_RTE-BovB 1164896 1165153 144 + . . scaffold1024 WUBlastX LINE_RTE-BovB 1165054 1165701 182 + . . scaffold1024 WUBlastX LINE_RTE-BovB 1165269 1166081 319 + . . scaffold1024 WUBlastX LINE_RTE-BovB 1165937 1166329 288 + . . scaffold1024 TRF Tandem_Repeat 1168162 1168216 101 + . . scaffold1024 WUBlastX LTR_Ngaro 1209590 1210390 655 - . . scaffold1024 WUBlastX LTR_Ngaro 1210458 1211096 131 - . . scaffold1024 WUBlastX LTR_Ngaro 1210653 1211162 174 - . . scaffold1024 WUBlastX LINE_L1-Tx1 1216532 1216723 31 + . . scaffold1024 WUBlastX LINE_RTE-X 1216589 1216702 41 + . . scaffold1024 WUBlastX LINE_RTE-X 1216613 1217302 66 + . . scaffold1024 WUBlastX LINE_CR1 1216741 1216965 80 + . . scaffold1024 WUBlastX LINE_CR1-L2 1216907 1217275 93 + . . scaffold1024 WUBlastX LINE_RTE-X 1217018 1217560 82 + . . scaffold1024 WUBlastX LINE_CR1-L2 1217027 1217275 165 + . . scaffold1024 WUBlastX LINE_Jockey 1217556 1217798 30 + . . scaffold1024 WUBlastX LINE_RTE-X 1217601 1217822 39 + . . scaffold1024 TRF Tandem_Repeat 1243681 1243721 82 + . . scaffold1024 GLEAN mRNA 1244176 1244661 1 - . ID=CGI_10028572; scaffold1024 GLEAN promoter 1244662 1245661 1 - . ID=CGI_10028572; scaffold1024 TRF Tandem_Repeat 1253691 1253729 60 + . . scaffold1024 TRF Tandem_Repeat 1261679 1261943 300 + . . scaffold1024 TRF Tandem_Repeat 1261679 1261943 262 + . . scaffold1024 GLEAN mRNA 1274082 1279790 1 - . ID=CGI_10028573; scaffold1024 GLEAN promoter 1279791 1280790 1 - . ID=CGI_10028573; scaffold1024 TRF Tandem_Repeat 1280025 1280212 196 + . . scaffold1024 TRF Tandem_Repeat 1280025 1280221 270 + . . scaffold1024 TRF Tandem_Repeat 1280883 1281077 273 + . . scaffold1024 GLEAN mRNA 1283549 1309169 0.738324 - . ID=CGI_10028574; scaffold1024 TRF Tandem_Repeat 1301917 1302718 1197 + . . scaffold1024 TRF Tandem_Repeat 1302723 1302765 59 + . . scaffold1024 TRF Tandem_Repeat 1302730 1302764 52 + . . scaffold1024 GLEAN promoter 1309170 1310169 0.738324 - . ID=CGI_10028574; scaffold1024 GLEAN mRNA 1330438 1339514 0.585013 - . ID=CGI_10028575; scaffold1024 GLEAN promoter 1339515 1340514 0.585013 - . ID=CGI_10028575; scaffold1024 TRF Tandem_Repeat 1341438 1342349 1509 + . . scaffold1024 WUBlastX LINE_L1-Tx1 1345982 1346284 114 + . . scaffold1024 WUBlastX DNA_hAT 1350446 1350757 61 + . . scaffold1024 WUBlastX DNA_hAT 1354831 1354956 20 + . . scaffold1024 WUBlastX DNA_hAT 1355229 1355528 125 + . . scaffold1024 WUBlastX DNA_hAT 1355782 1355901 56 + . . scaffold1024 WUBlastX DNA_hAT 1355782 1355952 20 + . . scaffold1024 WUBlastX DNA_hAT 1356234 1356404 82 + . . scaffold1024 WUBlastX DNA_hAT 1356673 1356909 56 + . . scaffold1024 WUBlastX DNA_hAT 1356688 1356981 39 + . . scaffold1024 TRF Tandem_Repeat 1360746 1360870 115 + . . scaffold1024 TRF Tandem_Repeat 1360869 1361079 190 + . . scaffold1024 TRF Tandem_Repeat 1361164 1361252 115 + . . scaffold1024 GLEAN mRNA 1364888 1375358 1 - . ID=CGI_10028576; scaffold1024 TRF Tandem_Repeat 1368718 1368866 79 + . . scaffold1024 TRF Tandem_Repeat 1369833 1370577 935 + . . scaffold1024 TRF Tandem_Repeat 1370715 1370752 60 + . . scaffold1024 GLEAN promoter 1375359 1376358 1 - . ID=CGI_10028576; scaffold1024 GLEAN mRNA 1390657 1406979 0.994632 - . ID=CGI_10028577; scaffold1024 GLEAN promoter 1406980 1407979 0.994632 - . ID=CGI_10028577; scaffold1024 GLEAN mRNA 1414777 1434798 0.72876 - . ID=CGI_10028578; scaffold1024 GLEAN promoter 1434799 1435798 0.72876 - . ID=CGI_10028578; scaffold1024 WUBlastX LTR_Ngaro 1435304 1435993 125 + . . scaffold1024 GLEAN promoter 1439251 1440250 0.999974 + . ID=CGI_10028579; scaffold1024 GLEAN mRNA 1440251 1440484 0.999974 + . ID=CGI_10028579; scaffold1024 TRF Tandem_Repeat 1465925 1466198 196 + . . scaffold1024 TRF Tandem_Repeat 1465985 1466198 225 + . . scaffold1024 WUBlastX DNA_TcMar-Tc1 1472842 1473051 38 + . . scaffold1024 WUBlastX DNA_TcMar-Tc1 1472872 1473048 38 + . . scaffold1024 TRF Tandem_Repeat 1475098 1475145 89 + . . scaffold1024 TRF Tandem_Repeat 1513616 1513655 71 + . . scaffold1024 TRF Tandem_Repeat 1522179 1522358 173 + . . scaffold1024 TRF Tandem_Repeat 1527781 1527840 84 + . . scaffold1024 TRF Tandem_Repeat 1528723 1528753 53 + . . scaffold1024 TRF Tandem_Repeat 1530024 1530093 96 + . . scaffold1024 TRF Tandem_Repeat 1530025 1530090 80 + . . scaffold1024 TRF Tandem_Repeat 1537249 1537304 53 + . . scaffold1024 TRF Tandem_Repeat 1544918 1544960 86 + . . scaffold1024 GLEAN mRNA 1551978 1565583 0.996603 - . ID=CGI_10028580; scaffold1024 TRF Tandem_Repeat 1554486 1554533 96 + . . scaffold1024 TRF Tandem_Repeat 1558113 1558161 98 + . . scaffold1024 TRF Tandem_Repeat 1562194 1562238 63 + . . scaffold1024 GLEAN promoter 1565584 1566583 0.996603 - . ID=CGI_10028580; scaffold1024 TRF Tandem_Repeat 1568543 1568651 173 + . . scaffold1024 TRF Tandem_Repeat 1574123 1574180 100 + . . scaffold1024 GLEAN mRNA 1575405 1581623 0.99957 - . ID=CGI_10028581; scaffold1024 TRF Tandem_Repeat 1577105 1577138 59 + . . scaffold1024 GLEAN promoter 1581624 1582623 0.99957 - . ID=CGI_10028581; scaffold1024 TRF Tandem_Repeat 1583268 1583315 96 + . . scaffold1024 TRF Tandem_Repeat 1587870 1587923 90 + . . scaffold1024 TRF Tandem_Repeat 1601016 1601062 94 + . . scaffold1024 TRF Tandem_Repeat 1607398 1607441 88 + . . scaffold1024 GLEAN mRNA 1620821 1621741 0.999894 - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_RTE-X 1620866 1622044 509 - . . scaffold1024 GLEAN promoter 1621742 1622741 0.999894 - . ID=CGI_10028582; scaffold1024 WUBlastX LINE_RTE-X 1622002 1622364 186 - . . scaffold1024 WUBlastX LINE_RTE-X 1622119 1622640 120 - . . scaffold1024 WUBlastX LINE_Jockey 1622643 1622978 77 - . . scaffold1024 WUBlastX LINE_RTE-X 1622706 1622981 99 - . . scaffold1024 WUBlastX LINE_RTE-X 1622757 1622984 155 - . . scaffold1024 WUBlastX LINE_RTE-BovB 1622757 1623032 42 - . . scaffold1024 WUBlastX LINE_L2 1622814 1623119 35 - . . scaffold1024 WUBlastX LINE_R1 1623639 1623800 20 - . . scaffold1024 WUBlastX LINE_CR1 1623658 1623723 20 - . . scaffold1024 WUBlastX DNA_TcMar-Tc2 1627055 1627699 113 - . . scaffold1024 WUBlastX DNA_TcMar-Tc2 1627208 1627699 161 - . . scaffold1024 TRF Tandem_Repeat 1629231 1629295 87 + . . scaffold1024 TRF Tandem_Repeat 1629293 1629357 98 + . . scaffold1024 TRF Tandem_Repeat 1631055 1631531 465 + . . scaffold1024 TRF Tandem_Repeat 1631055 1631531 519 + . . scaffold1024 GLEAN mRNA 1638486 1652087 0.995039 - . ID=CGI_10028583; scaffold1024 GLEAN promoter 1652088 1653087 0.995039 - . ID=CGI_10028583; scaffold1024 TRF Tandem_Repeat 1664213 1664259 94 + . . scaffold1024 TRF Tandem_Repeat 1666997 1667048 104 + . . scaffold1024 TRF Tandem_Repeat 1668439 1668479 82 + . . scaffold1024 WUBlastX LTR_Ngaro 1671927 1672616 125 + . . scaffold1024 WUBlastX LTR_Ngaro 1672591 1673340 195 + . . scaffold1024 WUBlastX LTR_Ngaro 1672822 1673349 388 + . . scaffold1024 WUBlastX LTR_Ngaro 1673330 1673974 427 + . . scaffold1024 WUBlastX LTR_Ngaro 1673977 1674408 95 + . . scaffold1024 WUBlastX LTR_Ngaro 1674037 1674399 146 + . . scaffold1024 WUBlastX LTR_Ngaro 1674199 1674477 31 + . . scaffold1024 TRF Tandem_Repeat 1675436 1675517 53 + . . scaffold1024 WUBlastX LTR_Gypsy 1677376 1677978 403 + . . scaffold1024 TRF Tandem_Repeat 1682780 1682810 55 + . . scaffold1024 TRF Tandem_Repeat 1688166 1688208 86 + . . scaffold1024 TRF Tandem_Repeat 1689016 1689054 78 + . . scaffold1024 GLEAN mRNA 1693215 1725420 0.440752 - . ID=CGI_10028584; scaffold1024 WUBlastX LTR_Ngaro 1700980 1701720 199 + . . scaffold1024 WUBlastX LTR_Ngaro 1701250 1701867 75 + . . scaffold1024 WUBlastX LTR_Ngaro 1701971 1702258 180 + . . scaffold1024 TRF Tandem_Repeat 1706421 1706510 153 + . . scaffold1024 TRF Tandem_Repeat 1719271 1719323 61 + . . scaffold1024 TRF Tandem_Repeat 1719388 1719452 112 + . . scaffold1024 WUBlastX DNA_IS4EU 1724061 1724393 116 + . . scaffold1024 WUBlastX DNA_IS4EU 1724061 1724477 101 + . . scaffold1024 GLEAN promoter 1725421 1726420 0.440752 - . ID=CGI_10028584; scaffold1024 TRF Tandem_Repeat 1730071 1730100 51 + . . scaffold1024 GLEAN mRNA 1751618 1765575 0.556405 - . ID=CGI_10028585; scaffold1024 WUBlastX DNA_Kolobok-IS4 1757044 1757136 32 + . . scaffold1024 WUBlastX DNA_Kolobok-IS4 1757149 1757313 22 + . . scaffold1024 WUBlastX DNA_IS4EU 1758683 1758961 162 + . . scaffold1024 WUBlastX DNA_Kolobok-IS4 1761728 1761964 60 - . . scaffold1024 WUBlastX DNA_IS4EU 1761773 1761991 74 - . . scaffold1024 GLEAN promoter 1765576 1766575 0.556405 - . ID=CGI_10028585; scaffold1026 GLEAN promoter 2715 3714 0.993572 + . ID=CGI_10003205; scaffold1026 GLEAN mRNA 3715 5436 0.993572 + . ID=CGI_10003205; scaffold1026 WUBlastX LINE_L2 7730 8413 432 + . . scaffold1026 WUBlastX LINE_L2 8537 8644 48 + . . scaffold1026 TRF Tandem_Repeat 8863 8991 83 + . . scaffold1026 TRF Tandem_Repeat 8863 8992 65 + . . scaffold1026 TRF Tandem_Repeat 9015 9068 51 + . . scaffold1026 TRF Tandem_Repeat 16753 16777 50 + . . scaffold1026 GLEAN mRNA 19935 35359 0.532297 - . ID=CGI_10003206; scaffold1026 TRF Tandem_Repeat 28267 28333 134 + . . scaffold1026 GLEAN promoter 35360 36359 0.532297 - . ID=CGI_10003206; scaffold1026 TRF Tandem_Repeat 44284 44329 74 + . . scaffold1026 WUBlastX LINE_Penelope 60382 60657 47 - . . scaffold1026 WUBlastX LINE_Penelope 60466 60639 71 - . . scaffold1026 WUBlastX LINE_Penelope 60945 61172 49 + . . scaffold1026 WUBlastX LINE_Penelope 60981 61511 97 + . . scaffold1026 WUBlastX LINE_Penelope 61499 62002 308 + . . scaffold1028 TRF Tandem_Repeat 7712 7912 186 + . . scaffold1028 TRF Tandem_Repeat 8865 8943 131 + . . scaffold1028 GLEAN mRNA 16866 22023 0.999337 - . ID=CGI_10009715; scaffold1028 GLEAN promoter 21923 22922 0.499838 + . ID=CGI_10009716; scaffold1028 GLEAN promoter 22024 23023 0.999337 - . ID=CGI_10009715; scaffold1028 GLEAN mRNA 22923 29528 0.499838 + . ID=CGI_10009716; scaffold1028 WUBlastX LINE_RTE-BovB 29624 29935 52 - . . scaffold1028 GLEAN mRNA 31798 37481 0.771382 - . ID=CGI_10009717; scaffold1028 TRF Tandem_Repeat 34589 34660 67 + . . scaffold1028 GLEAN promoter 37482 38481 0.771382 - . ID=CGI_10009717; scaffold1028 GLEAN mRNA 38359 105235 0.597726 - . ID=CGI_10009718; scaffold1028 WUBlastX LINE_RTE-X 42039 42266 21 + . . scaffold1028 WUBlastX LINE_RTE-X 42081 42257 39 + . . scaffold1028 WUBlastX LINE_RTE-X 42111 42278 43 + . . scaffold1028 WUBlastX LINE_RTE-X 42117 42332 41 + . . scaffold1028 WUBlastX LINE_RTE-X 42302 42781 29 + . . scaffold1028 WUBlastX LINE_RTE-X 42407 42739 48 + . . scaffold1028 WUBlastX LINE_RTE-X 42524 42757 54 + . . scaffold1028 TRF Tandem_Repeat 43340 43364 50 + . . scaffold1028 TRF Tandem_Repeat 44213 44253 82 + . . scaffold1028 TRF Tandem_Repeat 48100 48150 57 + . . scaffold1028 TRF Tandem_Repeat 48364 48612 306 + . . scaffold1028 TRF Tandem_Repeat 50579 50629 93 + . . scaffold1028 WUBlastX LINE_L1-Tx1 62536 62604 20 + . . scaffold1028 WUBlastX LINE_L1-Tx1 63151 63651 76 + . . scaffold1028 TRF Tandem_Repeat 81838 82242 603 + . . scaffold1028 TRF Tandem_Repeat 98637 98723 104 + . . scaffold1028 TRF Tandem_Repeat 98969 99127 133 + . . scaffold1028 TRF Tandem_Repeat 99036 99138 118 + . . scaffold1028 TRF Tandem_Repeat 99212 99298 93 + . . scaffold1028 TRF Tandem_Repeat 102578 103230 834 + . . scaffold1028 GLEAN promoter 105236 106235 0.597726 - . ID=CGI_10009718; scaffold1028 GLEAN mRNA 109730 111446 0.777732 - . ID=CGI_10009719; scaffold1028 GLEAN promoter 111447 112446 0.777732 - . ID=CGI_10009719; scaffold1028 GLEAN mRNA 112963 115137 0.443599 - . ID=CGI_10009720; scaffold1028 GLEAN promoter 115138 116137 0.443599 - . ID=CGI_10009720; scaffold1028 GLEAN promoter 126989 127988 0.991659 + . ID=CGI_10009721; scaffold1028 GLEAN mRNA 127989 143927 0.991659 + . ID=CGI_10009721; scaffold1028 TRF Tandem_Repeat 130102 130452 589 + . . scaffold1028 TRF Tandem_Repeat 136771 137486 243 + . . scaffold1028 TRF Tandem_Repeat 137056 137540 784 + . . scaffold1028 TRF Tandem_Repeat 140469 140714 391 + . . scaffold1028 GLEAN promoter 145838 146837 0.85975 + . ID=CGI_10009722; scaffold1028 GLEAN mRNA 146838 161646 0.85975 + . ID=CGI_10009722; scaffold1028 TRF Tandem_Repeat 175060 175104 90 + . . scaffold1028 TRF Tandem_Repeat 183485 183515 62 + . . scaffold1028 GLEAN promoter 197917 198916 0.814528 + . ID=CGI_10009724; scaffold1028 TRF Tandem_Repeat 198287 198329 86 + . . scaffold1028 GLEAN mRNA 198917 222810 0.814528 + . ID=CGI_10009724; scaffold1028 TRF Tandem_Repeat 219283 219344 124 + . . scaffold1028 WUBlastX LINE_L1-Tx1 226162 226308 26 + . . scaffold1028 WUBlastX LINE_L1 226588 226851 34 + . . scaffold1028 TRF Tandem_Repeat 231418 231445 56 + . . scaffold1028 GLEAN mRNA 234494 235507 0.83621 - . ID=CGI_10009725; scaffold1028 GLEAN promoter 235508 236507 0.83621 - . ID=CGI_10009725; scaffold1029 GLEAN promoter 1496 2495 0.651135 + . ID=CGI_10000394; scaffold1029 GLEAN mRNA 2496 5077 0.651135 + . ID=CGI_10000394; scaffold1030 GLEAN promoter 1 201 0.777732 + . ID=CGI_10004307; scaffold1030 GLEAN mRNA 202 4242 0.777732 + . ID=CGI_10004307; scaffold1030 WUBlastX DNA_Kolobok 19400 19552 82 + . . scaffold1030 WUBlastX DNA_Kolobok 20747 21013 43 - . . scaffold1030 TRF Tandem_Repeat 21710 21741 55 + . . scaffold1030 WUBlastX LTR_Pao 22889 23020 23 - . . scaffold1030 WUBlastX LTR_Pao 22919 22996 24 - . . scaffold1030 WUBlastX LTR_Pao 23007 23699 117 - . . scaffold1030 WUBlastX LTR_Pao 23631 23726 30 - . . scaffold1030 WUBlastX LTR_Pao 23723 23887 65 - . . scaffold1030 WUBlastX LTR_Pao 23881 24042 31 - . . scaffold1030 WUBlastX LTR_Pao 23887 23976 39 - . . scaffold1030 TRF Tandem_Repeat 33443 33526 123 + . . scaffold1030 WUBlastX LTR_Gypsy 39630 40505 201 + . . scaffold1030 WUBlastX LTR_Gypsy 39819 40493 202 + . . scaffold1030 WUBlastX LTR_Gypsy 39825 40910 140 + . . scaffold1030 WUBlastX LTR_Gypsy 40839 41057 31 + . . scaffold1030 WUBlastX LTR_Lenti 40977 41165 31 + . . scaffold1030 WUBlastX LTR_Gypsy 41244 41366 55 + . . scaffold1030 WUBlastX LTR_Gypsy 41408 43999 1988 + . . scaffold1030 WUBlastX LTR_DIRS 43958 44011 23 + . . scaffold1030 TRF Tandem_Repeat 44876 44929 72 + . . scaffold1030 TRF Tandem_Repeat 47035 47099 121 + . . scaffold1030 TRF Tandem_Repeat 54916 54971 112 + . . scaffold1030 GLEAN mRNA 89605 95906 0.999675 - . ID=CGI_10004309; scaffold1030 GLEAN promoter 95907 96404 0.999675 - . ID=CGI_10004309; scaffold1031 GLEAN mRNA 3884 11736 0.84103 - . ID=CGI_10019690; scaffold1031 TRF Tandem_Repeat 6442 6477 63 + . . scaffold1031 WUBlastX LINE_Penelope 8808 9077 31 - . . scaffold1031 WUBlastX LINE_Penelope 9103 9324 28 - . . scaffold1031 WUBlastX LINE_Penelope 10281 10424 56 - . . scaffold1031 GLEAN promoter 11737 12736 0.84103 - . ID=CGI_10019690; scaffold1031 GLEAN mRNA 13120 14756 1 - . ID=CGI_10019691; scaffold1031 GLEAN promoter 14757 15756 1 - . ID=CGI_10019691; scaffold1031 TRF Tandem_Repeat 22689 23540 684 + . . scaffold1031 TRF Tandem_Repeat 22698 23540 758 + . . scaffold1031 TRF Tandem_Repeat 29342 29390 62 + . . scaffold1031 TRF Tandem_Repeat 29351 29390 53 + . . scaffold1031 TRF Tandem_Repeat 30332 30377 92 + . . scaffold1031 WUBlastX LINE_L1 33646 34386 82 + . . scaffold1031 WUBlastX LINE_RTE-X 34404 34781 51 + . . scaffold1031 TRF Tandem_Repeat 40382 40430 98 + . . scaffold1031 GLEAN promoter 46020 47019 0.999951 + . ID=CGI_10019692; scaffold1031 GLEAN mRNA 47020 65221 0.999951 + . ID=CGI_10019692; scaffold1031 TRF Tandem_Repeat 50787 50851 121 + . . scaffold1031 TRF Tandem_Repeat 51053 51116 119 + . . scaffold1031 TRF Tandem_Repeat 52245 52306 108 + . . scaffold1031 GLEAN mRNA 70298 73278 0.734554 - . ID=CGI_10019693; scaffold1031 TRF Tandem_Repeat 70885 70926 66 + . . scaffold1031 GLEAN promoter 73279 74278 0.734554 - . ID=CGI_10019693; scaffold1031 GLEAN promoter 74605 75604 0.889634 + . ID=CGI_10019694; scaffold1031 TRF Tandem_Repeat 74612 74657 92 + . . scaffold1031 GLEAN mRNA 75605 79171 0.889634 + . ID=CGI_10019694; scaffold1031 TRF Tandem_Repeat 81367 82359 388 + . . scaffold1031 TRF Tandem_Repeat 81367 82359 370 + . . scaffold1031 TRF Tandem_Repeat 81610 81711 62 + . . scaffold1031 WUBlastX LINE_RTE-X 83960 84397 102 + . . scaffold1031 GLEAN promoter 96330 97329 0.999994 + . ID=CGI_10019695; scaffold1031 GLEAN mRNA 97330 99020 0.999994 + . ID=CGI_10019695; scaffold1031 TRF Tandem_Repeat 105448 105536 155 + . . scaffold1031 TRF Tandem_Repeat 109474 109884 624 + . . scaffold1031 TRF Tandem_Repeat 111554 111886 504 + . . scaffold1031 TRF Tandem_Repeat 115857 115903 94 + . . scaffold1031 TRF Tandem_Repeat 119047 119083 65 + . . scaffold1031 TRF Tandem_Repeat 129010 129049 71 + . . scaffold1031 TRF Tandem_Repeat 129380 129412 66 + . . scaffold1031 GLEAN promoter 142728 143727 0.997604 + . ID=CGI_10019696; scaffold1031 GLEAN mRNA 143728 160463 0.997604 + . ID=CGI_10019696; scaffold1031 TRF Tandem_Repeat 146354 146380 54 + . . scaffold1031 TRF Tandem_Repeat 147244 147278 70 + . . scaffold1031 TRF Tandem_Repeat 152382 152410 58 + . . scaffold1031 GLEAN promoter 159640 160639 0.999654 + . ID=CGI_10019697; scaffold1031 GLEAN mRNA 160640 171519 0.999654 + . ID=CGI_10019697; scaffold1031 GLEAN mRNA 202896 208011 0.999658 - . ID=CGI_10019698; scaffold1031 WUBlastX LTR_DIRS 206313 206414 39 - . . scaffold1031 WUBlastX LTR_DIRS 206401 206553 24 - . . scaffold1031 WUBlastX DNA_IS4EU 206716 206943 22 + . . scaffold1031 WUBlastX DNA_Kolobok-IS4 206913 207350 148 + . . scaffold1031 WUBlastX DNA_IS4EU 207021 207359 152 + . . scaffold1031 GLEAN promoter 208012 209011 0.999658 - . ID=CGI_10019698; scaffold1031 GLEAN mRNA 210989 211496 0.999676 - . ID=CGI_10019699; scaffold1031 GLEAN promoter 211497 212496 0.999676 - . ID=CGI_10019699; scaffold1031 TRF Tandem_Repeat 211844 211882 78 + . . scaffold1031 TRF Tandem_Repeat 227472 227522 77 + . . scaffold1031 GLEAN mRNA 230227 241344 0.594298 - . ID=CGI_10019700; scaffold1031 GLEAN promoter 241345 242344 0.594298 - . ID=CGI_10019700; scaffold1031 TRF Tandem_Repeat 250952 251093 137 + . . scaffold1031 TRF Tandem_Repeat 254978 255076 51 + . . scaffold1031 GLEAN promoter 257932 258931 0.997074 + . ID=CGI_10019702; scaffold1031 GLEAN mRNA 258932 260914 0.997074 + . ID=CGI_10019702; scaffold1031 TRF Tandem_Repeat 261813 261849 56 + . . scaffold1031 WUBlastX LINE_L2 266661 267056 60 + . . scaffold1031 WUBlastX LINE_L2 266796 267431 214 + . . scaffold1031 TRF Tandem_Repeat 272015 272069 73 + . . scaffold1031 TRF Tandem_Repeat 285543 285592 75 + . . scaffold1031 TRF Tandem_Repeat 287048 287094 51 + . . scaffold1031 TRF Tandem_Repeat 290018 290072 110 + . . scaffold1031 TRF Tandem_Repeat 311820 313266 974 + . . scaffold1031 TRF Tandem_Repeat 311824 312203 103 + . . scaffold1031 TRF Tandem_Repeat 312449 312516 57 + . . scaffold1031 TRF Tandem_Repeat 320073 320115 86 + . . scaffold1031 TRF Tandem_Repeat 338591 338683 114 + . . scaffold1031 GLEAN promoter 340775 341774 0.762776 + . ID=CGI_10019703; scaffold1031 GLEAN mRNA 341775 342704 0.762776 + . ID=CGI_10019703; scaffold1031 GLEAN mRNA 351482 356031 1 - . ID=CGI_10019704; scaffold1031 GLEAN promoter 356032 357031 1 - . ID=CGI_10019704; scaffold1031 WUBlastX LINE_RTE-X 362424 362579 25 - . . scaffold1031 GLEAN mRNA 364441 373639 0.999676 - . ID=CGI_10019705; scaffold1031 TRF Tandem_Repeat 364550 364645 111 + . . scaffold1031 GLEAN promoter 372789 373788 1 + . ID=CGI_10019706; scaffold1031 GLEAN promoter 373640 374639 0.999676 - . ID=CGI_10019705; scaffold1031 GLEAN mRNA 373789 377947 1 + . ID=CGI_10019706; scaffold1031 GLEAN promoter 380029 381028 0.700408 + . ID=CGI_10019707; scaffold1031 GLEAN mRNA 381029 385199 0.700408 + . ID=CGI_10019707; scaffold1031 GLEAN mRNA 387475 388722 0.970693 - . ID=CGI_10019708; scaffold1031 WUBlastX DNA_hAT 387943 388623 75 - . . scaffold1031 GLEAN promoter 388723 389722 0.970693 - . ID=CGI_10019708; scaffold1031 GLEAN promoter 392734 393733 0.937847 + . ID=CGI_10019709; scaffold1031 TRF Tandem_Repeat 392833 392865 66 + . . scaffold1031 GLEAN mRNA 393734 396168 0.937847 + . ID=CGI_10019709; scaffold1031 GLEAN promoter 398453 399452 0.759973 + . ID=CGI_10019710; scaffold1031 GLEAN mRNA 399453 444948 0.759973 + . ID=CGI_10019710; scaffold1031 TRF Tandem_Repeat 417345 417831 239 + . . scaffold1031 TRF Tandem_Repeat 443163 443895 679 + . . scaffold1031 TRF Tandem_Repeat 468465 468512 96 + . . scaffold1031 TRF Tandem_Repeat 470710 470765 76 + . . scaffold1031 TRF Tandem_Repeat 470792 471878 1607 + . . scaffold1031 TRF Tandem_Repeat 482378 482428 102 + . . scaffold1031 TRF Tandem_Repeat 487656 487697 84 + . . scaffold1031 TRF Tandem_Repeat 493173 493202 51 + . . scaffold1031 GLEAN promoter 493441 494440 0.985267 + . ID=CGI_10019711; scaffold1031 GLEAN mRNA 494441 522529 0.985267 + . ID=CGI_10019711; scaffold1031 TRF Tandem_Repeat 498013 498046 68 + . . scaffold1031 TRF Tandem_Repeat 523149 523217 120 + . . scaffold1031 TRF Tandem_Repeat 523159 523217 82 + . . scaffold1031 GLEAN promoter 527569 528568 0.999999 + . ID=CGI_10019712; scaffold1031 GLEAN mRNA 528569 531571 0.999999 + . ID=CGI_10019712; scaffold1031 TRF Tandem_Repeat 531976 532002 54 + . . scaffold1031 TRF Tandem_Repeat 532877 532930 90 + . . scaffold1031 WUBlastX DNA_Crypton 533392 533628 57 + . . scaffold1031 WUBlastX DNA_Crypton 534310 534693 46 + . . scaffold1031 WUBlastX DNA_Crypton 534325 534561 59 + . . scaffold1031 GLEAN mRNA 537248 545046 1 - . ID=CGI_10019713; scaffold1031 GLEAN promoter 545047 546046 1 - . ID=CGI_10019713; scaffold1031 GLEAN mRNA 547924 552037 1 - . ID=CGI_10019714; scaffold1031 GLEAN promoter 552038 553037 1 - . ID=CGI_10019714; scaffold1031 GLEAN promoter 553128 554127 0.999998 + . ID=CGI_10019715; scaffold1031 GLEAN mRNA 554128 556095 0.999998 + . ID=CGI_10019715; scaffold1031 GLEAN mRNA 557767 558246 0.999992 - . ID=CGI_10019716; scaffold1031 GLEAN promoter 558247 559246 0.999992 - . ID=CGI_10019716; scaffold1031 GLEAN mRNA 569158 569634 0.284781 - . ID=CGI_10019717; scaffold1031 GLEAN promoter 569635 570634 0.284781 - . ID=CGI_10019717; scaffold1031 GLEAN mRNA 571823 599273 0.583554 - . ID=CGI_10019718; scaffold1031 TRF Tandem_Repeat 571909 571941 66 + . . scaffold1031 WUBlastX DNA_TcMar-Tc1 592185 592346 69 - . . scaffold1031 WUBlastX DNA_TcMar-Tc1 592219 593214 147 - . . scaffold1031 WUBlastX DNA_TcMar-Tc1 592369 593211 264 - . . scaffold1031 GLEAN promoter 599274 600273 0.583554 - . ID=CGI_10019718; scaffold1031 GLEAN mRNA 601777 602253 0.987971 - . ID=CGI_10019719; scaffold1031 GLEAN promoter 602254 603253 0.987971 - . ID=CGI_10019719; scaffold1031 TRF Tandem_Repeat 610045 610108 110 + . . scaffold1032 GLEAN promoter 1 950 1 + . ID=CGI_10021654; scaffold1032 GLEAN mRNA 951 6378 1 + . ID=CGI_10021654; scaffold1032 TRF Tandem_Repeat 5238 5452 342 + . . scaffold1032 GLEAN mRNA 11830 12909 0.999661 - . ID=CGI_10021655; scaffold1032 GLEAN promoter 12910 13909 0.999661 - . ID=CGI_10021655; scaffold1032 GLEAN promoter 20338 21337 0.840259 + . ID=CGI_10021656; scaffold1032 GLEAN mRNA 21338 23952 0.840259 + . ID=CGI_10021656; scaffold1032 WUBlastX DNA_Sola 22045 22872 66 + . . scaffold1032 WUBlastX DNA_Sola 22807 22980 26 + . . scaffold1032 WUBlastX DNA_Sola 23311 23418 21 + . . scaffold1032 WUBlastX DNA_Sola 23494 23949 103 + . . scaffold1032 TRF Tandem_Repeat 25233 25267 70 + . . scaffold1032 GLEAN promoter 26482 27481 0.937761 + . ID=CGI_10021658; scaffold1032 GLEAN mRNA 27107 28348 1 - . ID=CGI_10021657; scaffold1032 GLEAN mRNA 27482 52851 0.937761 + . ID=CGI_10021658; scaffold1032 TRF Tandem_Repeat 28152 28184 57 + . . scaffold1032 GLEAN promoter 28349 29348 1 - . ID=CGI_10021657; scaffold1032 TRF Tandem_Repeat 34312 34345 68 + . . scaffold1032 TRF Tandem_Repeat 39778 39820 77 + . . scaffold1032 TRF Tandem_Repeat 46187 46332 163 + . . scaffold1032 TRF Tandem_Repeat 46202 46322 188 + . . scaffold1032 TRF Tandem_Repeat 49293 49323 53 + . . scaffold1032 TRF Tandem_Repeat 49529 50787 1839 + . . scaffold1032 TRF Tandem_Repeat 55288 55342 110 + . . scaffold1032 WUBlastX LINE_L1-Tx1 58468 59514 71 - . . scaffold1032 WUBlastX LINE_L1-Tx1 58684 59520 518 - . . scaffold1032 TRF Tandem_Repeat 62354 62441 126 + . . scaffold1032 TRF Tandem_Repeat 70830 72483 2006 + . . scaffold1032 GLEAN mRNA 73176 86996 0.649588 - . ID=CGI_10021659; scaffold1032 GLEAN promoter 86997 87996 0.649588 - . ID=CGI_10021659; scaffold1032 TRF Tandem_Repeat 89517 89573 78 + . . scaffold1032 TRF Tandem_Repeat 89517 89569 97 + . . scaffold1032 WUBlastX LINE_RTE-X 90294 90734 54 - . . scaffold1032 WUBlastX LINE_RTE-X 90369 90575 68 - . . scaffold1032 WUBlastX LINE_RTE-X 90387 90824 45 - . . scaffold1032 WUBlastX LINE_RTE-X 90420 90575 78 - . . scaffold1032 WUBlastX LINE_CR1-L2 90858 90917 20 - . . scaffold1032 WUBlastX LINE_RTE-X 90970 91215 71 - . . scaffold1032 WUBlastX LINE_RTE-X 91277 92149 77 - . . scaffold1032 WUBlastX LINE_RTE-X 91427 92149 181 - . . scaffold1032 WUBlastX LINE_RTE-X 92145 92348 104 - . . scaffold1032 WUBlastX LINE_L2 92178 92381 37 - . . scaffold1032 WUBlastX LINE_RTE-X 97114 97704 66 + . . scaffold1032 WUBlastX LINE_RTE-X 97276 97722 164 + . . scaffold1032 WUBlastX LINE_RTE-X 97706 98755 625 + . . scaffold1032 WUBlastX LINE_RTE-X 98761 99414 149 + . . scaffold1032 TRF Tandem_Repeat 99733 99773 59 + . . scaffold1032 GLEAN mRNA 111028 112392 1 - . ID=CGI_10021660; scaffold1032 GLEAN promoter 112393 113392 1 - . ID=CGI_10021660; scaffold1032 GLEAN promoter 124065 125064 0.999991 + . ID=CGI_10021661; scaffold1032 GLEAN mRNA 125065 125637 0.999991 + . ID=CGI_10021661; scaffold1032 TRF Tandem_Repeat 156304 156338 52 + . . scaffold1032 GLEAN promoter 158083 159082 1 + . ID=CGI_10021663; scaffold1032 GLEAN mRNA 158319 159684 0.98911 - . ID=CGI_10021662; scaffold1032 TRF Tandem_Repeat 158711 158772 108 + . . scaffold1032 GLEAN mRNA 159083 162931 1 + . ID=CGI_10021663; scaffold1032 GLEAN promoter 159685 160684 0.98911 - . ID=CGI_10021662; scaffold1032 GLEAN mRNA 165758 178756 0.984532 - . ID=CGI_10021664; scaffold1032 GLEAN promoter 178757 179756 0.984532 - . ID=CGI_10021664; scaffold1032 GLEAN promoter 179289 180288 0.999999 + . ID=CGI_10021665; scaffold1032 GLEAN mRNA 180289 182007 0.999999 + . ID=CGI_10021665; scaffold1032 TRF Tandem_Repeat 186251 186377 184 + . . scaffold1032 TRF Tandem_Repeat 187494 187519 52 + . . scaffold1032 GLEAN mRNA 189725 199098 1 - . ID=CGI_10021666; scaffold1032 TRF Tandem_Repeat 197263 197393 239 + . . scaffold1032 GLEAN promoter 199099 200098 1 - . ID=CGI_10021666; scaffold1032 TRF Tandem_Repeat 200400 200449 100 + . . scaffold1032 TRF Tandem_Repeat 201678 201722 67 + . . scaffold1032 TRF Tandem_Repeat 205575 205635 104 + . . scaffold1032 GLEAN promoter 207255 208254 0.986676 + . ID=CGI_10021668; scaffold1032 GLEAN mRNA 208255 209499 0.986676 + . ID=CGI_10021668; scaffold1032 TRF Tandem_Repeat 212803 212851 98 + . . scaffold1032 TRF Tandem_Repeat 218377 218409 66 + . . scaffold1032 TRF Tandem_Repeat 221491 221597 142 + . . scaffold1032 TRF Tandem_Repeat 223081 223208 103 + . . scaffold1032 TRF Tandem_Repeat 223136 223225 144 + . . scaffold1032 GLEAN mRNA 225152 226984 0.937846 - . ID=CGI_10021669; scaffold1032 GLEAN promoter 226647 227646 0.821224 + . ID=CGI_10021670; scaffold1032 GLEAN promoter 226985 227984 0.937846 - . ID=CGI_10021669; scaffold1032 GLEAN mRNA 227647 229863 0.821224 + . ID=CGI_10021670; scaffold1032 GLEAN mRNA 230147 248519 0.999675 - . ID=CGI_10021671; scaffold1032 TRF Tandem_Repeat 231603 232510 1496 + . . scaffold1032 TRF Tandem_Repeat 240931 240979 98 + . . scaffold1032 TRF Tandem_Repeat 242407 243686 1469 + . . scaffold1032 TRF Tandem_Repeat 243857 243888 55 + . . scaffold1032 GLEAN promoter 245959 246958 1 + . ID=CGI_10021672; scaffold1032 GLEAN mRNA 246959 248436 1 + . ID=CGI_10021672; scaffold1032 GLEAN promoter 248520 249519 0.999675 - . ID=CGI_10021671; scaffold1032 GLEAN mRNA 250279 251747 0.999998 - . ID=CGI_10021673; scaffold1032 GLEAN promoter 251748 252747 0.999998 - . ID=CGI_10021673; scaffold1032 TRF Tandem_Repeat 251914 251948 70 + . . scaffold1032 TRF Tandem_Repeat 254519 254666 147 + . . scaffold1032 GLEAN promoter 254774 255773 1 + . ID=CGI_10021674; scaffold1032 GLEAN mRNA 255774 258165 1 + . ID=CGI_10021674; scaffold1032 WUBlastX DNA_TcMar-Marin 260622 260687 22 + . . scaffold1032 WUBlastX DNA_TcMar-Marin 260800 260982 61 + . . scaffold1032 GLEAN mRNA 262092 269491 1 - . ID=CGI_10021675; scaffold1032 GLEAN promoter 269492 270491 1 - . ID=CGI_10021675; scaffold1032 GLEAN mRNA 279459 293224 0.993584 - . ID=CGI_10021676; scaffold1032 GLEAN promoter 293225 294224 0.993584 - . ID=CGI_10021676; scaffold1032 GLEAN mRNA 293442 307522 0.999686 - . ID=CGI_10021677; scaffold1032 TRF Tandem_Repeat 298542 298592 102 + . . scaffold1032 TRF Tandem_Repeat 302311 302368 82 + . . scaffold1032 TRF Tandem_Repeat 302628 302697 133 + . . scaffold1032 GLEAN promoter 307523 308522 0.999686 - . ID=CGI_10021677; scaffold1032 TRF Tandem_Repeat 308781 308826 83 + . . scaffold1032 GLEAN mRNA 314142 341364 0.796863 - . ID=CGI_10021678; scaffold1032 TRF Tandem_Repeat 325034 325358 484 + . . scaffold1032 TRF Tandem_Repeat 326424 326476 56 + . . scaffold1032 TRF Tandem_Repeat 326427 326475 62 + . . scaffold1032 TRF Tandem_Repeat 334333 334385 106 + . . scaffold1032 GLEAN promoter 341365 342364 0.796863 - . ID=CGI_10021678; scaffold1032 GLEAN promoter 343097 344096 0.589733 + . ID=CGI_10021679; scaffold1032 GLEAN mRNA 344097 412046 0.589733 + . ID=CGI_10021679; scaffold1032 TRF Tandem_Repeat 351784 351820 56 + . . scaffold1032 TRF Tandem_Repeat 382988 383125 232 + . . scaffold1032 TRF Tandem_Repeat 383394 383669 411 + . . scaffold1032 TRF Tandem_Repeat 409492 409887 257 + . . scaffold1032 TRF Tandem_Repeat 409492 409887 255 + . . scaffold1032 GLEAN mRNA 411182 415502 1 - . ID=CGI_10021680; scaffold1032 GLEAN promoter 412032 413031 1 + . ID=CGI_10021681; scaffold1032 GLEAN mRNA 413032 413679 1 + . ID=CGI_10021681; scaffold1032 GLEAN promoter 415503 416502 1 - . ID=CGI_10021680; scaffold1032 GLEAN mRNA 416307 433351 0.910714 - . ID=CGI_10021682; scaffold1032 TRF Tandem_Repeat 421655 421717 117 + . . scaffold1032 GLEAN promoter 433352 434351 0.910714 - . ID=CGI_10021682; scaffold1032 WUBlastX DNA_hAT-Blackja 436478 436609 50 + . . scaffold1032 WUBlastX DNA_hAT-Blackja 436852 436995 67 + . . scaffold1032 WUBlastX DNA_hAT-Blackja 437791 438021 50 + . . scaffold1032 WUBlastX DNA_hAT-Blackja 438164 438265 28 + . . scaffold1032 WUBlastX DNA_hAT-Blackja 438191 438286 30 + . . scaffold1032 WUBlastX DNA_hAT-Blackja 438261 438410 68 + . . scaffold1032 GLEAN promoter 438554 439553 0.965908 + . ID=CGI_10021683; scaffold1032 GLEAN mRNA 439554 439817 0.965908 + . ID=CGI_10021683; scaffold1032 GLEAN promoter 443966 444965 0.999984 + . ID=CGI_10021684; scaffold1032 GLEAN mRNA 444966 445232 0.999984 + . ID=CGI_10021684; scaffold1032 GLEAN promoter 446330 447329 0.965913 + . ID=CGI_10021685; scaffold1032 GLEAN mRNA 447330 447596 0.965913 + . ID=CGI_10021685; scaffold1032 WUBlastX LINE_RTE-X 450368 450784 123 - . . scaffold1032 TRF Tandem_Repeat 462357 462399 68 + . . scaffold1032 TRF Tandem_Repeat 462730 462980 305 + . . scaffold1032 TRF Tandem_Repeat 462732 462989 281 + . . scaffold1032 TRF Tandem_Repeat 463652 463932 346 + . . scaffold1032 TRF Tandem_Repeat 463652 464137 652 + . . scaffold1032 TRF Tandem_Repeat 463949 464135 212 + . . scaffold1032 TRF Tandem_Repeat 469469 470756 1748 + . . scaffold1032 TRF Tandem_Repeat 471547 471589 86 + . . scaffold1032 TRF Tandem_Repeat 474246 474395 56 + . . scaffold1032 TRF Tandem_Repeat 474689 474730 57 + . . scaffold1032 GLEAN promoter 481321 482320 0.58047 + . ID=CGI_10021686; scaffold1032 GLEAN mRNA 482321 483118 0.58047 + . ID=CGI_10021686; scaffold1032 GLEAN mRNA 501998 507360 0.990385 - . ID=CGI_10021687; scaffold1032 GLEAN promoter 507361 508360 0.990385 - . ID=CGI_10021687; scaffold1032 GLEAN mRNA 510198 518366 0.990014 - . ID=CGI_10021688; scaffold1032 TRF Tandem_Repeat 511843 512678 1408 + . . scaffold1032 TRF Tandem_Repeat 517219 517256 67 + . . scaffold1032 GLEAN promoter 518367 519366 0.990014 - . ID=CGI_10021688; scaffold1032 GLEAN promoter 519050 520049 0.99996 + . ID=CGI_10021689; scaffold1032 GLEAN mRNA 520050 523011 0.99996 + . ID=CGI_10021689; scaffold1032 GLEAN promoter 523281 524280 1 + . ID=CGI_10021690; scaffold1032 GLEAN mRNA 524281 526646 1 + . ID=CGI_10021690; scaffold1032 TRF Tandem_Repeat 524542 524851 512 + . . scaffold1032 GLEAN mRNA 530031 530805 1 - . ID=CGI_10021691; scaffold1032 GLEAN promoter 530806 531805 1 - . ID=CGI_10021691; scaffold1032 GLEAN promoter 531392 532391 0.999676 + . ID=CGI_10021692; scaffold1032 GLEAN mRNA 532392 542052 0.999676 + . ID=CGI_10021692; scaffold1032 GLEAN mRNA 545471 568883 0.969277 - . ID=CGI_10021693; scaffold1032 WUBlastX DNA_TcMar-Marin 551571 551957 230 - . . scaffold1032 WUBlastX DNA_TcMar-Marin 552157 552513 168 - . . scaffold1032 WUBlastX DNA_TcMar-Marin 552166 552453 191 - . . scaffold1032 WUBlastX DNA_TcMar-Marin 552447 552824 136 - . . scaffold1032 GLEAN promoter 559649 560648 0.932371 + . ID=CGI_10021694; scaffold1032 GLEAN mRNA 560649 579952 0.932371 + . ID=CGI_10021694; scaffold1032 TRF Tandem_Repeat 565176 565206 62 + . . scaffold1032 WUBlastX LINE_RTE-X 567893 568222 121 - . . scaffold1032 WUBlastX LINE_RTE-X 568213 568431 42 - . . scaffold1032 GLEAN promoter 568884 569883 0.969277 - . ID=CGI_10021693; scaffold1032 TRF Tandem_Repeat 582267 582300 68 + . . scaffold1032 TRF Tandem_Repeat 582319 582383 130 + . . scaffold1032 GLEAN mRNA 591049 595295 0.999998 - . ID=CGI_10021695; scaffold1032 GLEAN promoter 595296 596295 0.999998 - . ID=CGI_10021695; scaffold1032 GLEAN promoter 614977 615976 0.732633 + . ID=CGI_10021696; scaffold1032 GLEAN mRNA 615977 618456 0.732633 + . ID=CGI_10021696; scaffold1032 GLEAN promoter 617924 618923 0.998371 + . ID=CGI_10021697; scaffold1032 GLEAN mRNA 618924 622398 0.998371 + . ID=CGI_10021697; scaffold1032 TRF Tandem_Repeat 626207 626457 403 + . . scaffold1032 GLEAN mRNA 631219 648115 0.998703 - . ID=CGI_10021698; scaffold1032 TRF Tandem_Repeat 638411 638857 515 + . . scaffold1032 TRF Tandem_Repeat 638431 638507 72 + . . scaffold1032 GLEAN promoter 638479 639478 0.419711 + . ID=CGI_10021699; scaffold1032 GLEAN mRNA 639479 670826 0.419711 + . ID=CGI_10021699; scaffold1032 TRF Tandem_Repeat 641920 642818 711 + . . scaffold1032 GLEAN promoter 648116 649115 0.998703 - . ID=CGI_10021698; scaffold1032 TRF Tandem_Repeat 648420 648454 70 + . . scaffold1032 TRF Tandem_Repeat 648824 648865 84 + . . scaffold1032 TRF Tandem_Repeat 654324 655078 933 + . . scaffold1032 TRF Tandem_Repeat 667393 667417 50 + . . scaffold1032 TRF Tandem_Repeat 668707 669024 349 + . . scaffold1032 TRF Tandem_Repeat 668707 669024 283 + . . scaffold1032 TRF Tandem_Repeat 668707 669024 363 + . . scaffold1032 GLEAN promoter 670181 671180 0.883418 + . ID=CGI_10021700; scaffold1032 GLEAN mRNA 671181 674337 0.883418 + . ID=CGI_10021700; scaffold1032 TRF Tandem_Repeat 674892 674940 98 + . . scaffold1032 GLEAN promoter 677065 678064 0.883059 + . ID=CGI_10021701; scaffold1032 GLEAN mRNA 678065 682548 0.883059 + . ID=CGI_10021701; scaffold1032 GLEAN mRNA 684197 691286 0.556412 - . ID=CGI_10021702; scaffold1032 TRF Tandem_Repeat 689078 689196 89 + . . scaffold1032 TRF Tandem_Repeat 689262 689474 150 + . . scaffold1032 GLEAN promoter 691287 692286 0.556412 - . ID=CGI_10021702; scaffold1032 GLEAN mRNA 697623 701192 1 - . ID=CGI_10021703; scaffold1032 GLEAN promoter 701193 702192 1 - . ID=CGI_10021703; scaffold1032 GLEAN promoter 703102 704101 0.999372 + . ID=CGI_10021704; scaffold1032 GLEAN mRNA 704102 704296 0.999372 + . ID=CGI_10021704; scaffold1032 TRF Tandem_Repeat 705054 705151 88 + . . scaffold1032 TRF Tandem_Repeat 705496 705611 128 + . . scaffold1032 TRF Tandem_Repeat 705496 705611 112 + . . scaffold1032 TRF Tandem_Repeat 706189 706216 56 + . . scaffold1032 TRF Tandem_Repeat 706461 706601 166 + . . scaffold1032 WUBlastX LINE_L1 707391 707513 20 + . . scaffold1032 GLEAN mRNA 707458 710864 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_L2 707715 708161 66 + . . scaffold1032 WUBlastX LINE_RTE-X 707814 708164 157 + . . scaffold1032 WUBlastX LINE_RTE-X 707889 708191 232 + . . scaffold1032 WUBlastX LINE_RTE-X 708134 708838 84 + . . scaffold1032 WUBlastX LINE_RTE-X 708203 708715 285 + . . scaffold1032 WUBlastX LINE_R2-Hero 708245 708958 27 + . . scaffold1032 WUBlastX LINE_RTE-X 709520 710482 241 + . . scaffold1032 GLEAN promoter 710865 711864 0.590104 - . ID=CGI_10021705; scaffold1032 WUBlastX LINE_RTE-X 711043 711117 20 + . . scaffold1033 TRF Tandem_Repeat 2070 2141 144 + . . scaffold1033 GLEAN promoter 3486 4485 0.999949 + . ID=CGI_10007940; scaffold1033 TRF Tandem_Repeat 3878 3927 100 + . . scaffold1033 GLEAN mRNA 4486 9396 0.999949 + . ID=CGI_10007940; scaffold1033 GLEAN promoter 10978 11977 1 + . ID=CGI_10007941; scaffold1033 TRF Tandem_Repeat 11383 11447 103 + . . scaffold1033 GLEAN mRNA 11978 12820 1 + . ID=CGI_10007941; scaffold1033 WUBlastX LINE_RTE-BovB 15109 15435 47 - . . scaffold1033 WUBlastX LINE_RTE-BovB 15685 16032 61 - . . scaffold1033 WUBlastX LINE_RTE-BovB 15757 17232 601 - . . scaffold1033 WUBlastX LINE_L2 17416 17466 21 - . . scaffold1033 GLEAN promoter 18561 19560 1 + . ID=CGI_10007942; scaffold1033 GLEAN mRNA 19561 20333 1 + . ID=CGI_10007942; scaffold1033 GLEAN promoter 20651 21650 0.99964 + . ID=CGI_10007943; scaffold1033 GLEAN mRNA 21651 28213 0.99964 + . ID=CGI_10007943; scaffold1033 TRF Tandem_Repeat 24913 24943 62 + . . scaffold1033 GLEAN promoter 40211 41210 0.999223 + . ID=CGI_10007944; scaffold1033 GLEAN mRNA 41211 56291 0.999223 + . ID=CGI_10007944; scaffold1033 TRF Tandem_Repeat 41954 42036 62 + . . scaffold1033 TRF Tandem_Repeat 49443 49485 58 + . . scaffold1033 TRF Tandem_Repeat 49444 49498 55 + . . scaffold1033 TRF Tandem_Repeat 49984 50030 94 + . . scaffold1033 GLEAN mRNA 57131 59409 0.735371 - . ID=CGI_10007945; scaffold1033 GLEAN promoter 59410 60409 0.735371 - . ID=CGI_10007945; scaffold1033 GLEAN mRNA 65095 65271 0.561853 - . ID=CGI_10007946; scaffold1033 GLEAN promoter 65272 66271 0.561853 - . ID=CGI_10007946; scaffold1033 GLEAN mRNA 71300 72961 0.492556 - . ID=CGI_10007947; scaffold1033 GLEAN promoter 72962 73961 0.492556 - . ID=CGI_10007947; scaffold1033 TRF Tandem_Repeat 101349 101384 72 + . . scaffold1033 GLEAN promoter 105378 106377 1 + . ID=CGI_10007948; scaffold1033 GLEAN mRNA 106378 107154 1 + . ID=CGI_10007948; scaffold1033 TRF Tandem_Repeat 130005 130103 83 + . . scaffold1033 TRF Tandem_Repeat 130006 130106 93 + . . scaffold1033 TRF Tandem_Repeat 130006 130102 105 + . . scaffold1033 GLEAN promoter 133694 134693 0.945243 + . ID=CGI_10007949; scaffold1033 GLEAN mRNA 134694 147606 0.945243 + . ID=CGI_10007949; scaffold1033 TRF Tandem_Repeat 136508 136563 112 + . . scaffold1033 TRF Tandem_Repeat 139463 139501 78 + . . scaffold1033 TRF Tandem_Repeat 140130 140182 106 + . . scaffold1033 TRF Tandem_Repeat 147954 147990 74 + . . scaffold1033 TRF Tandem_Repeat 152240 152267 56 + . . scaffold1033 TRF Tandem_Repeat 152267 152302 54 + . . scaffold1033 GLEAN mRNA 154462 168235 0.951824 - . ID=CGI_10007950; scaffold1033 GLEAN promoter 168236 169235 0.951824 - . ID=CGI_10007950; scaffold1035 GLEAN mRNA 5188 5811 1 - . ID=CGI_10009360; scaffold1035 GLEAN promoter 5812 6811 1 - . ID=CGI_10009360; scaffold1035 TRF Tandem_Repeat 7713 7759 94 + . . scaffold1035 WUBlastX LINE_L1-Tx1 8507 8905 45 - . . scaffold1035 WUBlastX LINE_L1-Tx1 8609 8923 66 - . . scaffold1035 TRF Tandem_Repeat 8985 9026 84 + . . scaffold1035 WUBlastX LINE_L1-Tx1 9110 9538 56 - . . scaffold1035 WUBlastX LINE_L1-Tx1 9547 10188 316 - . . scaffold1035 WUBlastX LINE_L1-Tx1 10169 10495 110 - . . scaffold1035 WUBlastX LINE_L1-Tx1 10491 11162 114 - . . scaffold1035 WUBlastX LINE_RTE-BovB 10989 11198 33 - . . scaffold1035 WUBlastX LINE_L1 12145 12474 53 - . . scaffold1035 WUBlastX LINE_L1-Tx1 12223 12477 124 - . . scaffold1035 TRF Tandem_Repeat 25621 25650 51 + . . scaffold1035 TRF Tandem_Repeat 30568 30603 72 + . . scaffold1035 WUBlastX LTR_Ngaro 32813 32986 35 + . . scaffold1035 WUBlastX LTR_Ngaro 33004 33051 40 + . . scaffold1035 TRF Tandem_Repeat 38492 39569 1284 + . . scaffold1035 TRF Tandem_Repeat 40914 40974 70 + . . scaffold1035 TRF Tandem_Repeat 40917 40955 60 + . . scaffold1035 TRF Tandem_Repeat 40925 40974 66 + . . scaffold1035 TRF Tandem_Repeat 44182 44210 58 + . . scaffold1035 TRF Tandem_Repeat 46477 46501 50 + . . scaffold1035 TRF Tandem_Repeat 48131 48183 106 + . . scaffold1035 TRF Tandem_Repeat 48306 48451 156 + . . scaffold1035 TRF Tandem_Repeat 48695 48730 72 + . . scaffold1035 TRF Tandem_Repeat 49643 49690 96 + . . scaffold1035 TRF Tandem_Repeat 49929 50064 149 + . . scaffold1035 TRF Tandem_Repeat 49930 50064 173 + . . scaffold1035 WUBlastX LINE_L1 50624 51775 189 - . . scaffold1035 WUBlastX LINE_L1-Tx1 50636 51523 499 - . . scaffold1035 TRF Tandem_Repeat 53604 53662 111 + . . scaffold1035 TRF Tandem_Repeat 53797 53839 86 + . . scaffold1035 TRF Tandem_Repeat 56685 57438 1126 + . . scaffold1035 WUBlastX LINE_L1-Tx1 58888 59490 269 - . . scaffold1035 GLEAN mRNA 60708 60905 0.999768 - . ID=CGI_10009361; scaffold1035 GLEAN promoter 60906 61905 0.999768 - . ID=CGI_10009361; scaffold1035 WUBlastX LINE_L1 60980 61789 44 - . . scaffold1035 WUBlastX LINE_L2 61004 61591 81 - . . scaffold1035 TRF Tandem_Repeat 62194 62419 277 + . . scaffold1035 TRF Tandem_Repeat 63486 63538 52 + . . scaffold1035 TRF Tandem_Repeat 65631 65660 51 + . . scaffold1035 TRF Tandem_Repeat 66274 66318 90 + . . scaffold1035 TRF Tandem_Repeat 67114 67164 59 + . . scaffold1035 TRF Tandem_Repeat 72188 73323 1149 + . . scaffold1035 TRF Tandem_Repeat 72372 73323 1259 + . . scaffold1035 TRF Tandem_Repeat 73496 73531 63 + . . scaffold1035 WUBlastX LINE_CR1 94804 94944 60 - . . scaffold1035 WUBlastX LINE_CR1 95043 95096 30 - . . scaffold1035 WUBlastX LINE_CR1 95104 95160 26 - . . scaffold1035 WUBlastX LINE_CR1-L2 95104 95142 27 - . . scaffold1035 WUBlastX LINE_I 96195 96332 29 + . . scaffold1035 WUBlastX LINE_L1 96948 97001 23 + . . scaffold1035 WUBlastX LINE_CR1 97165 97458 104 + . . scaffold1035 WUBlastX LINE_RTE-BovB 97440 97889 102 + . . scaffold1035 WUBlastX LINE_CR1 97533 97958 406 + . . scaffold1035 WUBlastX LINE_CR1 97946 98800 682 + . . scaffold1035 TRF Tandem_Repeat 103206 103958 1098 + . . scaffold1035 TRF Tandem_Repeat 104163 104200 58 + . . scaffold1035 TRF Tandem_Repeat 116972 117015 79 + . . scaffold1035 TRF Tandem_Repeat 117061 117094 59 + . . scaffold1035 WUBlastX LTR_Gypsy 121242 122174 49 - . . scaffold1035 WUBlastX LTR_Gypsy 121662 122327 23 - . . scaffold1035 WUBlastX LTR_Gypsy 122736 122990 53 - . . scaffold1035 WUBlastX LTR_Gypsy 122781 124310 644 - . . scaffold1035 WUBlastX LTR_Gypsy 123090 126617 1418 - . . scaffold1035 WUBlastX LTR_Gypsy 124524 127148 711 - . . scaffold1035 WUBlastX LTR_Gypsy 127140 127490 59 - . . scaffold1035 WUBlastX LTR_Gypsy 127209 127613 40 - . . scaffold1035 TRF Tandem_Repeat 130754 130795 59 + . . scaffold1035 TRF Tandem_Repeat 132203 133288 1543 + . . scaffold1035 WUBlastX DNA_En-Spm 144701 144841 64 - . . scaffold1035 WUBlastX DNA_En-Spm 144725 144871 44 - . . scaffold1035 WUBlastX DNA_En-Spm 145870 145998 67 - . . scaffold1035 WUBlastX DNA_En-Spm 146003 146404 159 - . . scaffold1035 WUBlastX DNA_En-Spm 146199 147053 420 - . . scaffold1035 WUBlastX DNA_En-Spm 147056 147388 84 - . . scaffold1035 WUBlastX DNA_En-Spm 147074 147532 25 - . . scaffold1035 GLEAN promoter 149169 150168 0.633807 + . ID=CGI_10009362; scaffold1035 GLEAN mRNA 150169 151913 0.633807 + . ID=CGI_10009362; scaffold1035 GLEAN mRNA 151931 152131 0.986676 - . ID=CGI_10009364; scaffold1035 GLEAN promoter 152132 153131 0.986676 - . ID=CGI_10009364; scaffold1035 WUBlastX LTR_Gypsy 156336 156521 82 + . . scaffold1035 GLEAN promoter 156961 157960 0.999666 + . ID=CGI_10009365; scaffold1035 GLEAN mRNA 157961 163458 0.999666 + . ID=CGI_10009365; scaffold1035 WUBlastX DNA_Kolobok 161685 161924 27 - . . scaffold1035 WUBlastX DNA_Kolobok 161709 161819 66 - . . scaffold1035 TRF Tandem_Repeat 165979 166214 285 + . . scaffold1035 TRF Tandem_Repeat 170755 170821 62 + . . scaffold1035 TRF Tandem_Repeat 172711 172743 66 + . . scaffold1035 WUBlastX LINE_L1 187844 188047 35 + . . scaffold1035 WUBlastX LINE_RTE-X 187886 187996 48 + . . scaffold1035 WUBlastX LINE_RTE-BovB 187921 188577 83 + . . scaffold1035 WUBlastX LINE_RTE-X 188056 189450 526 + . . scaffold1035 WUBlastX LINE_L1 189658 189780 22 + . . scaffold1035 WUBlastX LINE_RTE-X 189862 189912 20 + . . scaffold1035 WUBlastX LINE_RTE-X 190051 190179 49 + . . scaffold1035 GLEAN mRNA 190715 198522 0.54485 - . ID=CGI_10009366; scaffold1035 GLEAN promoter 198523 199522 0.54485 - . ID=CGI_10009366; scaffold1035 WUBlastX DNA_Harbinger 204522 204677 64 - . . scaffold1035 TRF Tandem_Repeat 210618 210649 55 + . . scaffold1036 TRF Tandem_Repeat 927 1004 156 + . . scaffold1036 GLEAN promoter 23284 24283 1 + . ID=CGI_10019942; scaffold1036 GLEAN mRNA 24284 27765 1 + . ID=CGI_10019942; scaffold1036 TRF Tandem_Repeat 31321 31356 54 + . . scaffold1036 WUBlastX DNA_IS4EU 36725 36925 58 + . . scaffold1036 WUBlastX DNA_IS4EU 37210 37299 44 + . . scaffold1036 WUBlastX DNA_IS4EU 37807 38307 149 + . . scaffold1036 WUBlastX DNA_IS4EU 38309 38755 334 + . . scaffold1036 WUBlastX DNA_IS4EU 38888 39190 116 - . . scaffold1036 WUBlastX DNA_IS4EU 39198 39713 178 - . . scaffold1036 WUBlastX DNA_IS4EU 39940 40185 69 - . . scaffold1036 WUBlastX LTR_Ngaro 55188 55742 341 - . . scaffold1036 WUBlastX LTR_Ngaro 56085 56270 108 - . . scaffold1036 WUBlastX LTR_Ngaro 56291 56518 31 - . . scaffold1036 GLEAN mRNA 62334 73775 0.755696 - . ID=CGI_10019943; scaffold1036 WUBlastX DNA_IS4EU 67360 67542 33 + . . scaffold1036 WUBlastX DNA_IS4EU 67772 68227 52 + . . scaffold1036 WUBlastX DNA_IS4EU 67913 68215 61 + . . scaffold1036 WUBlastX DNA_IS4EU 68033 68272 42 + . . scaffold1036 WUBlastX DNA_IS4EU 68299 68433 45 + . . scaffold1036 WUBlastX DNA_Kolobok-IS4 69276 69509 110 - . . scaffold1036 WUBlastX DNA_Kolobok-IS4 71116 71235 25 + . . scaffold1036 WUBlastX DNA_Kolobok-IS4 71226 71438 76 + . . scaffold1036 WUBlastX DNA_IS4EU 71238 71411 82 + . . scaffold1036 GLEAN promoter 73776 74775 0.755696 - . ID=CGI_10019943; scaffold1036 GLEAN promoter 78871 79870 0.560206 + . ID=CGI_10019944; scaffold1036 GLEAN mRNA 79871 80269 0.560206 + . ID=CGI_10019944; scaffold1036 GLEAN mRNA 82935 87648 1 - . ID=CGI_10019945; scaffold1036 TRF Tandem_Repeat 85881 85910 51 + . . scaffold1036 GLEAN promoter 87649 88648 1 - . ID=CGI_10019945; scaffold1036 GLEAN mRNA 88595 88978 1 - . ID=CGI_10019946; scaffold1036 GLEAN promoter 88979 89978 1 - . ID=CGI_10019946; scaffold1036 TRF Tandem_Repeat 109420 109460 55 + . . scaffold1036 TRF Tandem_Repeat 109651 109696 57 + . . scaffold1036 TRF Tandem_Repeat 109652 109693 50 + . . scaffold1036 GLEAN mRNA 116757 118766 0.528485 - . ID=CGI_10019948; scaffold1036 GLEAN promoter 118767 119766 0.528485 - . ID=CGI_10019948; scaffold1036 GLEAN mRNA 120515 134480 0.843476 - . ID=CGI_10019949; scaffold1036 GLEAN promoter 133621 134620 0.999413 + . ID=CGI_10019950; scaffold1036 GLEAN promoter 134481 135480 0.843476 - . ID=CGI_10019949; scaffold1036 GLEAN mRNA 134621 136288 0.999413 + . ID=CGI_10019950; scaffold1036 WUBlastX LINE_L1 135395 136285 25 + . . scaffold1036 TRF Tandem_Repeat 146894 146961 136 + . . scaffold1036 TRF Tandem_Repeat 162196 162304 164 + . . scaffold1036 TRF Tandem_Repeat 162205 162302 169 + . . scaffold1036 TRF Tandem_Repeat 162351 162444 125 + . . scaffold1036 TRF Tandem_Repeat 163148 163244 72 + . . scaffold1036 TRF Tandem_Repeat 163681 163722 57 + . . scaffold1036 TRF Tandem_Repeat 163681 163730 55 + . . scaffold1036 TRF Tandem_Repeat 164121 164163 86 + . . scaffold1036 GLEAN mRNA 165168 179169 0.593142 - . ID=CGI_10019951; scaffold1036 WUBlastX LINE_RTE-X 167250 168185 562 + . . scaffold1036 WUBlastX DNA_TcMar-Tc1 173362 173784 98 + . . scaffold1036 WUBlastX DNA_TcMar-Tc1 174736 175119 22 + . . scaffold1036 WUBlastX DNA_TcMar-Tc1 174808 175119 109 + . . scaffold1036 WUBlastX DNA_TcMar-Tc1 175088 175396 144 + . . scaffold1036 TRF Tandem_Repeat 176882 177011 176 + . . scaffold1036 TRF Tandem_Repeat 177371 177397 54 + . . scaffold1036 GLEAN promoter 179170 180169 0.593142 - . ID=CGI_10019951; scaffold1036 TRF Tandem_Repeat 192798 192831 68 + . . scaffold1036 WUBlastX DNA_Harbinger 197207 197446 36 + . . scaffold1036 WUBlastX DNA_Harbinger 197207 197386 37 + . . scaffold1036 GLEAN mRNA 198017 198895 0.999984 - . ID=CGI_10019952; scaffold1036 GLEAN promoter 198896 199895 0.999984 - . ID=CGI_10019952; scaffold1036 WUBlastX DNA_Maverick 200345 200518 48 + . . scaffold1036 WUBlastX DNA_Maverick 200432 200581 37 + . . scaffold1036 WUBlastX DNA_Maverick 200563 200856 34 + . . scaffold1036 WUBlastX DNA_Maverick 201074 202072 412 + . . scaffold1036 GLEAN mRNA 202062 206192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 202080 202436 143 - . . scaffold1036 WUBlastX DNA_Maverick 202361 202837 219 - . . scaffold1036 WUBlastX DNA_Maverick 202430 202834 230 - . . scaffold1036 WUBlastX DNA_Maverick 202433 202915 187 - . . scaffold1036 WUBlastX DNA_Maverick 202831 203238 129 - . . scaffold1036 WUBlastX DNA_Maverick 203226 203390 76 - . . scaffold1036 WUBlastX DNA_Maverick 203247 203441 62 - . . scaffold1036 WUBlastX DNA_Maverick 204877 205002 48 - . . scaffold1036 WUBlastX DNA_Maverick 205025 205123 39 - . . scaffold1036 WUBlastX DNA_Maverick 205028 205279 26 - . . scaffold1036 WUBlastX DNA_Maverick 205040 205228 48 - . . scaffold1036 WUBlastX DNA_Maverick 205544 205930 56 - . . scaffold1036 WUBlastX DNA_Maverick 205658 205924 66 - . . scaffold1036 WUBlastX DNA_Maverick 205739 205936 91 - . . scaffold1036 GLEAN promoter 206193 207192 0.444605 - . ID=CGI_10019953; scaffold1036 WUBlastX DNA_Maverick 207153 207254 57 - . . scaffold1036 WUBlastX DNA_Maverick 207192 207983 231 - . . scaffold1036 WUBlastX DNA_Maverick 207594 207983 280 - . . scaffold1036 WUBlastX DNA_Maverick 208007 208267 28 - . . scaffold1036 WUBlastX DNA_Maverick 208007 208147 50 - . . scaffold1036 WUBlastX DNA_Maverick 208457 208549 27 - . . scaffold1036 WUBlastX DNA_Maverick 208567 209007 125 - . . scaffold1036 WUBlastX DNA_Maverick 211183 211260 39 - . . scaffold1036 WUBlastX DNA_Maverick 211257 211760 268 - . . scaffold1036 WUBlastX DNA_Maverick 211712 211783 45 - . . scaffold1036 GLEAN mRNA 213665 214024 0.999372 - . ID=CGI_10019955; scaffold1036 GLEAN promoter 214025 215024 0.999372 - . ID=CGI_10019955; scaffold1036 WUBlastX LINE_L1-Tx1 214911 215021 38 + . . scaffold1036 WUBlastX LINE_L1-Tx1 214978 216795 999 + . . scaffold1036 WUBlastX LINE_L1 214999 218310 366 + . . scaffold1036 WUBlastX LINE_L1-Tx1 217393 218520 73 + . . scaffold1036 GLEAN promoter 218049 219048 0.999372 + . ID=CGI_10019956; scaffold1036 WUBlastX LINE_L1-Tx1 218313 218696 37 + . . scaffold1036 TRF Tandem_Repeat 218834 218893 102 + . . scaffold1036 GLEAN mRNA 219049 219306 0.999372 + . ID=CGI_10019956; scaffold1036 WUBlastX LTR_ERV1 219592 219687 30 + . . scaffold1036 WUBlastX DNA_Harbinger 220330 220719 131 + . . scaffold1036 WUBlastX DNA_Harbinger 220345 220800 26 + . . scaffold1036 WUBlastX DNA_Harbinger 220390 220719 168 + . . scaffold1036 WUBlastX DNA_Harbinger 220941 221210 118 + . . scaffold1036 WUBlastX DNA_Harbinger 221034 221294 105 + . . scaffold1036 TRF Tandem_Repeat 222747 222796 84 + . . scaffold1036 TRF Tandem_Repeat 223554 223591 76 + . . scaffold1036 WUBlastX DNA_Harbinger 226749 226949 71 - . . scaffold1036 TRF Tandem_Repeat 226965 227040 98 + . . scaffold1036 TRF Tandem_Repeat 227038 227070 57 + . . scaffold1036 WUBlastX DNA_Harbinger 227468 227620 68 - . . scaffold1036 GLEAN promoter 227869 228868 0.994909 + . ID=CGI_10019957; scaffold1036 GLEAN mRNA 228869 245204 0.994909 + . ID=CGI_10019957; scaffold1036 WUBlastX LINE_CR1 234004 235065 886 - . . scaffold1036 WUBlastX LINE_I 235773 235814 20 - . . scaffold1036 WUBlastX LINE_L1-Tx1 240852 241886 139 - . . scaffold1036 TRF Tandem_Repeat 241964 242613 870 + . . scaffold1036 WUBlastX LINE_L1-Tx1 242768 243697 603 - . . scaffold1036 WUBlastX LINE_L1-Tx1 243924 243995 23 - . . scaffold1036 WUBlastX LINE_L1 245130 245201 33 - . . scaffold1036 WUBlastX LINE_L1 245399 246397 59 - . . scaffold1036 WUBlastX LINE_L1-Tx1 245570 246970 759 - . . scaffold1036 WUBlastX LINE_L1-Tx1 246960 247307 186 - . . scaffold1036 TRF Tandem_Repeat 248812 248853 59 + . . scaffold1036 TRF Tandem_Repeat 249023 250063 1389 + . . scaffold1036 TRF Tandem_Repeat 254097 254141 90 + . . scaffold1036 GLEAN promoter 266105 267104 1 + . ID=CGI_10019958; scaffold1036 GLEAN mRNA 267105 270221 1 + . ID=CGI_10019958; scaffold1036 GLEAN promoter 272314 273313 0.919073 + . ID=CGI_10019959; scaffold1036 GLEAN mRNA 273314 285936 0.919073 + . ID=CGI_10019959; scaffold1036 TRF Tandem_Repeat 274829 274929 60 + . . scaffold1036 WUBlastX DNA_P 277413 277532 30 - . . scaffold1036 TRF Tandem_Repeat 278985 279026 84 + . . scaffold1036 TRF Tandem_Repeat 279549 280346 926 + . . scaffold1036 TRF Tandem_Repeat 279549 280346 924 + . . scaffold1036 TRF Tandem_Repeat 280415 280469 110 + . . scaffold1036 TRF Tandem_Repeat 280611 280667 57 + . . scaffold1036 TRF Tandem_Repeat 280899 280935 74 + . . scaffold1036 TRF Tandem_Repeat 281279 281399 158 + . . scaffold1036 TRF Tandem_Repeat 281672 281705 54 + . . scaffold1036 TRF Tandem_Repeat 286458 286712 297 + . . scaffold1036 TRF Tandem_Repeat 295908 295944 74 + . . scaffold1036 TRF Tandem_Repeat 297690 297773 59 + . . scaffold1036 TRF Tandem_Repeat 298114 298164 52 + . . scaffold1036 WUBlastX LINE_RTE-X 298254 298763 90 + . . scaffold1036 WUBlastX LINE_RTE-X 299578 299862 128 + . . scaffold1036 WUBlastX LINE_RTE-X 300015 300170 47 + . . scaffold1036 TRF Tandem_Repeat 301128 301189 124 + . . scaffold1036 WUBlastX LINE_CR1-L2 302068 302820 382 + . . scaffold1036 GLEAN promoter 315778 316777 1 + . ID=CGI_10019960; scaffold1036 GLEAN mRNA 316778 318242 1 + . ID=CGI_10019960; scaffold1036 GLEAN promoter 321076 322075 0.999998 + . ID=CGI_10019961; scaffold1036 GLEAN mRNA 322076 338878 0.999998 + . ID=CGI_10019961; scaffold1036 WUBlastX LTR_Gypsy 329763 330557 202 - . . scaffold1036 GLEAN mRNA 330530 330844 0.617695 - . ID=CGI_10019962; scaffold1036 GLEAN promoter 330845 331844 0.617695 - . ID=CGI_10019962; scaffold1036 WUBlastX LTR_Gypsy 331301 331483 65 - . . scaffold1036 TRF Tandem_Repeat 334566 334621 112 + . . scaffold1036 TRF Tandem_Repeat 337063 337120 64 + . . scaffold1036 TRF Tandem_Repeat 338161 338239 140 + . . scaffold1036 TRF Tandem_Repeat 342068 342108 82 + . . scaffold1036 GLEAN promoter 346210 347209 0.651133 + . ID=CGI_10019963; scaffold1036 TRF Tandem_Repeat 346785 346879 104 + . . scaffold1036 GLEAN mRNA 347210 370983 0.651133 + . ID=CGI_10019963; scaffold1036 TRF Tandem_Repeat 365227 365307 83 + . . scaffold1036 TRF Tandem_Repeat 365445 365484 80 + . . scaffold1036 TRF Tandem_Repeat 366535 366600 132 + . . scaffold1036 TRF Tandem_Repeat 398610 398848 406 + . . scaffold1036 GLEAN promoter 399727 400726 0.593391 + . ID=CGI_10019964; scaffold1036 GLEAN mRNA 400727 401689 0.593391 + . ID=CGI_10019964; scaffold1036 TRF Tandem_Repeat 406073 406146 148 + . . scaffold1036 GLEAN mRNA 408022 411117 0.997479 - . ID=CGI_10019965; scaffold1036 GLEAN promoter 411118 412117 0.997479 - . ID=CGI_10019965; scaffold1036 TRF Tandem_Repeat 414002 414039 76 + . . scaffold1036 TRF Tandem_Repeat 422127 424079 2674 + . . scaffold1036 TRF Tandem_Repeat 429507 429548 84 + . . scaffold1036 TRF Tandem_Repeat 431339 431403 121 + . . scaffold1036 GLEAN promoter 436623 437622 0.998304 + . ID=CGI_10019966; scaffold1036 GLEAN mRNA 437623 451092 0.998304 + . ID=CGI_10019966; scaffold1036 TRF Tandem_Repeat 440542 440619 147 + . . scaffold1036 TRF Tandem_Repeat 442792 442917 252 + . . scaffold1036 TRF Tandem_Repeat 442807 442913 91 + . . scaffold1036 TRF Tandem_Repeat 443613 443804 348 + . . scaffold1036 TRF Tandem_Repeat 447199 447263 96 + . . scaffold1036 GLEAN mRNA 454450 457423 1 - . ID=CGI_10019967; scaffold1036 TRF Tandem_Repeat 455312 455815 226 + . . scaffold1036 GLEAN promoter 457424 458423 1 - . ID=CGI_10019967; scaffold1036 TRF Tandem_Repeat 458275 458359 116 + . . scaffold1036 TRF Tandem_Repeat 458275 458359 116 + . . scaffold1036 TRF Tandem_Repeat 459762 459827 105 + . . scaffold1036 GLEAN mRNA 462273 467852 0.999402 - . ID=CGI_10019968; scaffold1036 GLEAN promoter 466075 467074 0.994736 + . ID=CGI_10019969; scaffold1036 GLEAN mRNA 467075 470417 0.994736 + . ID=CGI_10019969; scaffold1036 GLEAN promoter 467853 468852 0.999402 - . ID=CGI_10019968; scaffold1036 TRF Tandem_Repeat 469793 469842 91 + . . scaffold1036 TRF Tandem_Repeat 469919 470011 99 + . . scaffold1036 GLEAN mRNA 472347 489883 1 - . ID=CGI_10019970; scaffold1036 WUBlastX DNA_MuDR 479252 479518 85 - . . scaffold1036 WUBlastX DNA_MuDR 479312 479560 51 - . . scaffold1036 WUBlastX DNA_MuDR 479324 479650 44 - . . scaffold1036 GLEAN promoter 489884 490883 1 - . ID=CGI_10019970; scaffold1036 TRF Tandem_Repeat 490971 491544 961 + . . scaffold1036 TRF Tandem_Repeat 493849 494427 598 + . . scaffold1036 TRF Tandem_Repeat 498163 499558 1874 + . . scaffold1036 TRF Tandem_Repeat 501836 502302 446 + . . scaffold1036 TRF Tandem_Repeat 509942 510169 438 + . . scaffold1036 GLEAN mRNA 511786 515252 0.999525 - . ID=CGI_10019972; scaffold1036 GLEAN promoter 515253 516252 0.999525 - . ID=CGI_10019972; scaffold1036 TRF Tandem_Repeat 515993 516055 110 + . . scaffold1036 TRF Tandem_Repeat 516132 516223 114 + . . scaffold1036 TRF Tandem_Repeat 516641 516670 53 + . . scaffold1036 TRF Tandem_Repeat 517911 517979 120 + . . scaffold1036 TRF Tandem_Repeat 518087 518122 72 + . . scaffold1036 TRF Tandem_Repeat 518251 518296 74 + . . scaffold1036 TRF Tandem_Repeat 518612 518654 86 + . . scaffold1036 TRF Tandem_Repeat 518652 518686 70 + . . scaffold1036 TRF Tandem_Repeat 518873 518897 50 + . . scaffold1036 TRF Tandem_Repeat 518991 519029 51 + . . scaffold1036 TRF Tandem_Repeat 525030 525095 132 + . . scaffold1036 TRF Tandem_Repeat 525174 525211 62 + . . scaffold1036 GLEAN promoter 526223 527222 0.25208 + . ID=CGI_10019973; scaffold1036 GLEAN mRNA 527223 534698 0.25208 + . ID=CGI_10019973; scaffold1036 TRF Tandem_Repeat 529212 529293 139 + . . scaffold1036 TRF Tandem_Repeat 533779 534193 647 + . . scaffold1036 TRF Tandem_Repeat 534814 534857 61 + . . scaffold1036 TRF Tandem_Repeat 535591 535665 141 + . . scaffold1036 TRF Tandem_Repeat 540317 540355 69 + . . scaffold1036 TRF Tandem_Repeat 540619 540658 71 + . . scaffold1036 TRF Tandem_Repeat 541148 541191 88 + . . scaffold1036 TRF Tandem_Repeat 543038 543239 111 + . . scaffold1036 TRF Tandem_Repeat 544659 544881 401 + . . scaffold1036 TRF Tandem_Repeat 545800 546883 1580 + . . scaffold1036 TRF Tandem_Repeat 547637 547681 90 + . . scaffold1036 GLEAN promoter 578462 579461 0.769286 + . ID=CGI_10019974; scaffold1036 GLEAN mRNA 579462 594232 0.769286 + . ID=CGI_10019974; scaffold1036 TRF Tandem_Repeat 580270 580619 555 + . . scaffold1036 TRF Tandem_Repeat 581011 581204 335 + . . scaffold1036 TRF Tandem_Repeat 582155 582964 1341 + . . scaffold1036 TRF Tandem_Repeat 582815 582957 68 + . . scaffold1036 TRF Tandem_Repeat 583431 584069 884 + . . scaffold1036 TRF Tandem_Repeat 585820 586701 638 + . . scaffold1036 TRF Tandem_Repeat 588033 588087 76 + . . scaffold1036 TRF Tandem_Repeat 588260 589292 1583 + . . scaffold1036 TRF Tandem_Repeat 590670 590984 445 + . . scaffold1036 GLEAN mRNA 594409 600469 0.995654 - . ID=CGI_10019975; scaffold1036 WUBlastX DNA_Maverick 596375 596428 29 + . . scaffold1036 WUBlastX DNA_Maverick 596417 596524 43 + . . scaffold1036 WUBlastX DNA_Maverick 596484 596867 152 + . . scaffold1036 WUBlastX DNA_Maverick 596556 596873 163 + . . scaffold1036 WUBlastX DNA_Maverick 596872 596991 68 + . . scaffold1036 WUBlastX DNA_Maverick 596872 597057 55 + . . scaffold1036 WUBlastX DNA_Harbinger 597286 597642 131 + . . scaffold1036 WUBlastX DNA_Harbinger 598621 598761 58 + . . scaffold1036 WUBlastX DNA_Harbinger 598645 598767 98 + . . scaffold1036 WUBlastX LTR_Gypsy 598964 599152 73 + . . scaffold1036 GLEAN promoter 600470 601469 0.995654 - . ID=CGI_10019975; scaffold1036 TRF Tandem_Repeat 602950 602974 50 + . . scaffold1036 WUBlastX LINE_RTE-X 604884 605552 34 - . . scaffold1036 WUBlastX LINE_RTE-X 605115 605252 37 - . . scaffold1036 WUBlastX LINE_RTE-X 605302 605745 53 - . . scaffold1036 WUBlastX LINE_Rex-Babar 606339 606428 27 - . . scaffold1036 WUBlastX LTR_Gypsy-Cigr 609198 609353 79 - . . scaffold1036 WUBlastX LTR_Gypsy 609228 609359 103 - . . scaffold1036 WUBlastX LTR_Gypsy 609353 609451 32 - . . scaffold1037 GLEAN promoter 1 478 0.83374 + . ID=CGI_10017443; scaffold1037 GLEAN mRNA 479 23368 0.83374 + . ID=CGI_10017443; scaffold1037 TRF Tandem_Repeat 14115 14219 72 + . . scaffold1037 TRF Tandem_Repeat 14123 14210 77 + . . scaffold1037 TRF Tandem_Repeat 21616 21648 66 + . . scaffold1037 GLEAN promoter 22973 23972 0.99961 + . ID=CGI_10017444; scaffold1037 GLEAN mRNA 23973 45670 0.99961 + . ID=CGI_10017444; scaffold1037 TRF Tandem_Repeat 44164 44223 120 + . . scaffold1037 GLEAN promoter 52962 53961 1 + . ID=CGI_10017445; scaffold1037 GLEAN mRNA 53962 54267 1 + . ID=CGI_10017445; scaffold1037 GLEAN mRNA 54033 58124 1 - . ID=CGI_10017446; scaffold1037 GLEAN promoter 58125 59124 1 - . ID=CGI_10017446; scaffold1037 TRF Tandem_Repeat 65236 65303 136 + . . scaffold1037 TRF Tandem_Repeat 67902 67965 128 + . . scaffold1037 GLEAN promoter 73835 74834 0.929965 + . ID=CGI_10017447; scaffold1037 TRF Tandem_Repeat 74357 74395 78 + . . scaffold1037 GLEAN mRNA 74835 93896 0.929965 + . ID=CGI_10017447; scaffold1037 TRF Tandem_Repeat 75912 77094 572 + . . scaffold1037 GLEAN mRNA 83609 85141 1 - . ID=CGI_10017448; scaffold1037 GLEAN promoter 85142 86141 1 - . ID=CGI_10017448; scaffold1037 TRF Tandem_Repeat 97243 97281 78 + . . scaffold1037 TRF Tandem_Repeat 101305 101341 65 + . . scaffold1037 GLEAN mRNA 102723 103831 0.999997 - . ID=CGI_10017449; scaffold1037 GLEAN promoter 103832 104831 0.999997 - . ID=CGI_10017449; scaffold1037 WUBlastX LINE_L2 119394 119483 21 + . . scaffold1037 WUBlastX LINE_L2 119409 119480 22 + . . scaffold1037 WUBlastX LINE_L2 119549 119995 148 + . . scaffold1037 WUBlastX LINE_CR1-L2 119708 119995 161 + . . scaffold1037 WUBlastX LINE_CR1 119708 120058 126 + . . scaffold1037 WUBlastX LINE_L2 119997 120260 89 + . . scaffold1037 WUBlastX LINE_L2 120208 121008 318 + . . scaffold1037 WUBlastX LINE_L2 122628 124037 358 + . . scaffold1037 WUBlastX LINE_CR1-L2 122727 124616 208 + . . scaffold1037 WUBlastX LINE_RTE-X 124904 125182 33 - . . scaffold1037 WUBlastX LINE_RTE-X 124964 125275 243 - . . scaffold1037 WUBlastX LTR_Gypsy 126674 127156 41 + . . scaffold1037 WUBlastX LTR_Gypsy 126842 127354 181 + . . scaffold1037 TRF Tandem_Repeat 130906 130956 88 + . . scaffold1037 GLEAN mRNA 157290 163561 1 - . ID=CGI_10017450; scaffold1037 GLEAN promoter 163562 164561 1 - . ID=CGI_10017450; scaffold1037 GLEAN mRNA 166518 167471 0.538322 - . ID=CGI_10017451; scaffold1037 GLEAN promoter 167472 168471 0.538322 - . ID=CGI_10017451; scaffold1037 GLEAN promoter 168767 169766 0.999339 + . ID=CGI_10017452; scaffold1037 GLEAN mRNA 169767 176423 0.999339 + . ID=CGI_10017452; scaffold1037 TRF Tandem_Repeat 172272 172345 148 + . . scaffold1037 TRF Tandem_Repeat 173570 173667 169 + . . scaffold1037 GLEAN promoter 178159 179158 0.999605 + . ID=CGI_10017453; scaffold1037 GLEAN mRNA 179159 180621 0.999605 + . ID=CGI_10017453; scaffold1037 GLEAN mRNA 181759 192016 1 - . ID=CGI_10017454; scaffold1037 TRF Tandem_Repeat 190901 190945 90 + . . scaffold1037 GLEAN promoter 191168 192167 0.701525 + . ID=CGI_10017455; scaffold1037 GLEAN promoter 192017 193016 1 - . ID=CGI_10017454; scaffold1037 GLEAN mRNA 192168 208893 0.701525 + . ID=CGI_10017455; scaffold1037 TRF Tandem_Repeat 207029 207594 1033 + . . scaffold1037 TRF Tandem_Repeat 208643 208682 80 + . . scaffold1037 GLEAN promoter 209599 210598 0.72876 + . ID=CGI_10017456; scaffold1037 GLEAN mRNA 210599 214513 0.72876 + . ID=CGI_10017456; scaffold1037 TRF Tandem_Repeat 211603 211697 67 + . . scaffold1037 WUBlastX LINE_L1 212287 212559 31 + . . scaffold1037 WUBlastX LINE_L1-Tx1 212287 212484 79 + . . scaffold1037 GLEAN mRNA 220070 223866 1 - . ID=CGI_10017457; scaffold1037 GLEAN promoter 223867 224866 1 - . ID=CGI_10017457; scaffold1037 WUBlastX DNA_Sola 225750 225983 56 - . . scaffold1037 WUBlastX DNA_Sola 226134 227087 390 - . . scaffold1037 GLEAN mRNA 233070 239890 0.997731 - . ID=CGI_10017458; scaffold1037 TRF Tandem_Repeat 238458 238501 88 + . . scaffold1037 GLEAN promoter 239891 240890 0.997731 - . ID=CGI_10017458; scaffold1037 TRF Tandem_Repeat 240357 240411 110 + . . scaffold1037 TRF Tandem_Repeat 245087 245120 68 + . . scaffold1037 GLEAN promoter 246130 247129 0.593391 + . ID=CGI_10017459; scaffold1037 GLEAN mRNA 247130 249381 0.593391 + . ID=CGI_10017459; scaffold1037 TRF Tandem_Repeat 248603 248664 124 + . . scaffold1037 GLEAN promoter 266155 267154 0.999991 + . ID=CGI_10017460; scaffold1037 GLEAN mRNA 267155 269647 0.999991 + . ID=CGI_10017460; scaffold1037 TRF Tandem_Repeat 278445 278498 108 + . . scaffold1037 TRF Tandem_Repeat 282391 283362 1575 + . . scaffold1037 TRF Tandem_Repeat 283371 283422 50 + . . scaffold1037 TRF Tandem_Repeat 283371 283423 61 + . . scaffold1037 GLEAN mRNA 285424 289410 0.998703 - . ID=CGI_10017461; scaffold1037 GLEAN promoter 289411 290410 0.998703 - . ID=CGI_10017461; scaffold1037 TRF Tandem_Repeat 290771 290813 77 + . . scaffold1037 WUBlastX LINE_RTE-X 300430 300936 61 + . . scaffold1037 WUBlastX LINE_RTE-X 300544 301041 167 + . . scaffold1037 TRF Tandem_Repeat 301377 301403 54 + . . scaffold1037 GLEAN promoter 311595 312594 1 + . ID=CGI_10017462; scaffold1037 GLEAN mRNA 312595 315133 1 + . ID=CGI_10017462; scaffold1037 TRF Tandem_Repeat 316822 316863 84 + . . scaffold1037 WUBlastX LINE_L1 317213 317725 53 + . . scaffold1037 WUBlastX LINE_CR1 317470 317721 68 + . . scaffold1037 WUBlastX LINE_CR1 317569 317853 49 + . . scaffold1037 WUBlastX LINE_RTE-X 317611 317769 69 + . . scaffold1037 GLEAN promoter 319658 320657 1 + . ID=CGI_10017463; scaffold1037 GLEAN mRNA 320658 328402 1 + . ID=CGI_10017463; scaffold1037 WUBlastX LINE_RTE-X 329698 330039 37 + . . scaffold1037 WUBlastX LINE_RTE-X 329928 330347 122 + . . scaffold1037 WUBlastX LINE_RTE-X 330036 330344 126 + . . scaffold1037 WUBlastX LINE_RTE-X 330352 330432 31 + . . scaffold1037 WUBlastX LINE_RTE-X 330355 330411 35 + . . scaffold1037 GLEAN promoter 340684 341683 0.722718 + . ID=CGI_10017464; scaffold1037 GLEAN mRNA 341684 347440 0.722718 + . ID=CGI_10017464; scaffold1037 WUBlastX LTR_DIRS? 344505 344780 74 + . . scaffold1037 WUBlastX LTR_DIRS 344577 344789 108 + . . scaffold1037 WUBlastX LTR_DIRS? 345315 345644 200 + . . scaffold1037 GLEAN mRNA 350003 354947 1 - . ID=CGI_10017465; scaffold1037 GLEAN promoter 354948 355947 1 - . ID=CGI_10017465; scaffold1037 GLEAN promoter 355704 356703 0.618227 + . ID=CGI_10017466; scaffold1037 GLEAN mRNA 356704 356985 0.618227 + . ID=CGI_10017466; scaffold1037 GLEAN mRNA 359042 384651 0.999676 - . ID=CGI_10017467; scaffold1037 GLEAN promoter 384652 385651 0.999676 - . ID=CGI_10017467; scaffold1037 TRF Tandem_Repeat 384852 384906 110 + . . scaffold1037 GLEAN promoter 386870 387869 0.648518 + . ID=CGI_10017468; scaffold1037 GLEAN mRNA 387870 388535 0.648518 + . ID=CGI_10017468; scaffold1037 TRF Tandem_Repeat 391265 391541 302 + . . scaffold1037 TRF Tandem_Repeat 391265 391519 258 + . . scaffold1037 GLEAN mRNA 391563 400666 0.8141 - . ID=CGI_10017469; scaffold1037 TRF Tandem_Repeat 394533 394584 104 + . . scaffold1037 TRF Tandem_Repeat 397855 397881 54 + . . scaffold1037 TRF Tandem_Repeat 398985 399027 86 + . . scaffold1037 TRF Tandem_Repeat 399838 399880 86 + . . scaffold1037 GLEAN promoter 400667 401666 0.8141 - . ID=CGI_10017469; scaffold1037 GLEAN mRNA 404491 417471 0.734569 - . ID=CGI_10017470; scaffold1037 GLEAN promoter 417472 418471 0.734569 - . ID=CGI_10017470; scaffold1037 GLEAN mRNA 425365 440889 0.999735 - . ID=CGI_10017471; scaffold1037 GLEAN promoter 440890 441889 0.999735 - . ID=CGI_10017471; scaffold1037 GLEAN promoter 442849 443848 0.997155 + . ID=CGI_10017472; scaffold1037 GLEAN mRNA 443849 447254 0.997155 + . ID=CGI_10017472; scaffold1037 GLEAN mRNA 450584 455190 0.58583 - . ID=CGI_10017473; scaffold1037 GLEAN promoter 455191 456190 0.58583 - . ID=CGI_10017473; scaffold1037 TRF Tandem_Repeat 455288 455358 142 + . . scaffold1037 TRF Tandem_Repeat 455443 455499 107 + . . scaffold1037 TRF Tandem_Repeat 456953 457059 142 + . . scaffold1037 GLEAN mRNA 464865 468633 0.999076 - . ID=CGI_10017474; scaffold1037 GLEAN promoter 468634 469633 0.999076 - . ID=CGI_10017474; scaffold1037 GLEAN promoter 469249 470248 0.443823 + . ID=CGI_10017475; scaffold1037 GLEAN mRNA 470249 476268 0.443823 + . ID=CGI_10017475; scaffold1037 TRF Tandem_Repeat 471894 471944 102 + . . scaffold1037 GLEAN mRNA 477164 486439 1 - . ID=CGI_10017476; scaffold1037 TRF Tandem_Repeat 478375 478587 215 + . . scaffold1037 GLEAN promoter 486069 487068 0.819128 + . ID=CGI_10017477; scaffold1037 GLEAN promoter 486440 487439 1 - . ID=CGI_10017476; scaffold1037 GLEAN mRNA 487069 492769 0.819128 + . ID=CGI_10017477; scaffold1037 TRF Tandem_Repeat 495153 495243 164 + . . scaffold1037 WUBlastX LINE_RTE-X 495612 496154 107 + . . scaffold1037 GLEAN mRNA 501087 505475 1 - . ID=CGI_10017478; scaffold1037 TRF Tandem_Repeat 504634 505127 706 + . . scaffold1037 TRF Tandem_Repeat 504634 505127 751 + . . scaffold1037 TRF Tandem_Repeat 504634 504881 390 + . . scaffold1037 TRF Tandem_Repeat 504885 505127 387 + . . scaffold1037 GLEAN promoter 505476 505967 1 - . ID=CGI_10017478; scaffold1038 GLEAN mRNA 3851 5846 0.999672 - . ID=CGI_10002261; scaffold1038 GLEAN promoter 5847 6846 0.999672 - . ID=CGI_10002261; scaffold1038 GLEAN mRNA 6569 6772 0.999372 - . ID=CGI_10002262; scaffold1038 GLEAN promoter 6773 7772 0.999372 - . ID=CGI_10002262; scaffold1038 GLEAN promoter 9842 10841 1 + . ID=CGI_10002263; scaffold1038 GLEAN mRNA 10842 12200 1 + . ID=CGI_10002263; scaffold1038 GLEAN mRNA 14378 20211 1 - . ID=CGI_10002264; scaffold1038 GLEAN promoter 19967 20966 0.99481 + . ID=CGI_10002265; scaffold1038 GLEAN promoter 20212 21211 1 - . ID=CGI_10002264; scaffold1038 GLEAN mRNA 20967 40194 0.99481 + . ID=CGI_10002265; scaffold1039 WUBlastX LINE_L1-Tx1 3 413 88 + . . scaffold1039 WUBlastX LINE_L1-Tx1 66 401 112 + . . scaffold1039 WUBlastX LINE_RTE-BovB 3839 4024 85 - . . scaffold1039 WUBlastX LINE_RTE-BovB 4409 4669 38 - . . scaffold1039 TRF Tandem_Repeat 7029 7252 206 + . . scaffold1039 TRF Tandem_Repeat 7233 7336 181 + . . scaffold1039 WUBlastX LINE_CR1 9477 10124 270 - . . scaffold1039 WUBlastX LINE_CR1 9585 10115 385 - . . scaffold1039 WUBlastX LINE_L2 9996 10148 62 - . . scaffold1039 WUBlastX LINE_CR1 10155 10538 284 - . . scaffold1039 WUBlastX LINE_CR1 10218 10538 295 - . . scaffold1039 WUBlastX LINE_CR1 10528 12153 512 - . . scaffold1039 WUBlastX LINE_CR1 11170 12408 275 - . . scaffold1039 WUBlastX LINE_CR1 12197 12463 75 - . . scaffold104 WUBlastX LTR_Pao 519 2768 1652 + . . scaffold104 WUBlastX LTR_Pao 2768 3367 140 + . . scaffold104 WUBlastX LTR_Pao 3178 3921 348 + . . scaffold104 WUBlastX LTR_Pao 3298 3924 644 + . . scaffold104 WUBlastX LTR_Pao 3890 4354 483 + . . scaffold104 WUBlastX LTR_Pao 4353 4457 72 + . . scaffold104 WUBlastX LTR_Pao 4377 4472 24 + . . scaffold1041 TRF Tandem_Repeat 5109 5142 50 + . . scaffold1041 TRF Tandem_Repeat 11552 11579 56 + . . scaffold1041 TRF Tandem_Repeat 17344 17393 100 + . . scaffold1041 WUBlastX LINE_L1 20811 20879 21 + . . scaffold1041 WUBlastX LINE_L1-Tx1 21039 21347 47 + . . scaffold1041 WUBlastX LINE_L1-Tx1 21105 21389 77 + . . scaffold1041 WUBlastX LINE_L1-Tx1 21117 21341 79 + . . scaffold1041 WUBlastX LINE_L1-Tx1 21358 22755 54 + . . scaffold1041 WUBlastX LINE_L1-Tx1 21373 21714 196 + . . scaffold1041 WUBlastX LINE_L1-Tx1 21385 21801 79 + . . scaffold1041 WUBlastX LINE_L1 21920 22051 62 + . . scaffold1041 WUBlastX LINE_L1-Tx1 22075 22650 72 + . . scaffold1041 WUBlastX LINE_L1-Tx1 22333 22653 89 + . . scaffold1041 WUBlastX LINE_RTE-BovB 24031 24222 75 - . . scaffold1041 WUBlastX LINE_RTE-BovB 24076 24231 81 - . . scaffold1041 TRF Tandem_Repeat 25639 25699 59 + . . scaffold1041 TRF Tandem_Repeat 26218 26296 149 + . . scaffold1041 TRF Tandem_Repeat 26475 26505 62 + . . scaffold1041 TRF Tandem_Repeat 29575 29641 55 + . . scaffold1041 WUBlastX LTR_Gypsy 29910 30245 30 - . . scaffold1041 WUBlastX LTR_Gypsy-Cigr 29976 30251 38 - . . scaffold1041 WUBlastX LTR_Gypsy 30138 30239 43 - . . scaffold1041 WUBlastX LTR_Gypsy 30147 30284 28 - . . scaffold1041 WUBlastX LTR_Gypsy-Cigr 30736 31782 532 - . . scaffold1041 WUBlastX LTR_Gypsy 31823 32110 61 - . . scaffold1041 WUBlastX LTR_Gypsy 31916 32143 65 - . . scaffold1041 WUBlastX LTR_Gypsy 32172 32369 28 - . . scaffold1041 WUBlastX LTR_Gypsy 32172 32336 33 - . . scaffold1041 WUBlastX LTR_Gypsy 32172 32258 38 - . . scaffold1041 WUBlastX LTR_Copia 32378 32596 21 - . . scaffold1041 WUBlastX LTR_Gypsy 32384 32512 23 - . . scaffold1041 WUBlastX LTR_Gypsy 32667 32780 29 - . . scaffold1041 WUBlastX LTR_Gypsy 32779 33009 43 - . . scaffold1041 WUBlastX LTR_Gypsy-Cigr 33024 33251 21 - . . scaffold1041 GLEAN mRNA 33529 33714 0.999372 - . ID=CGI_10014666; scaffold1041 GLEAN promoter 33715 34714 0.999372 - . ID=CGI_10014666; scaffold1041 WUBlastX LTR_Ngaro 37256 37744 25 - . . scaffold1041 WUBlastX LTR_Ngaro 37259 37567 71 - . . scaffold1041 WUBlastX LTR_Ngaro 37639 37725 27 - . . scaffold1041 TRF Tandem_Repeat 38027 38065 78 + . . scaffold1041 WUBlastX LTR_Ngaro 41300 41653 80 + . . scaffold1041 WUBlastX LTR_Ngaro 43261 43419 33 + . . scaffold1041 WUBlastX LTR_Ngaro 43285 43419 45 + . . scaffold1041 TRF Tandem_Repeat 50437 50504 95 + . . scaffold1041 TRF Tandem_Repeat 59320 59526 299 + . . scaffold1041 GLEAN promoter 61670 62669 0.836762 + . ID=CGI_10014667; scaffold1041 GLEAN mRNA 62670 78442 0.836762 + . ID=CGI_10014667; scaffold1041 WUBlastX LTR_Gypsy 82480 82584 78 + . . scaffold1041 WUBlastX LTR_Gypsy 82593 82694 72 + . . scaffold1041 WUBlastX LTR_Gypsy 82694 83737 124 + . . scaffold1041 WUBlastX LTR_Gypsy 83749 83823 29 + . . scaffold1041 WUBlastX LTR_Gypsy 83749 83865 22 + . . scaffold1041 TRF Tandem_Repeat 84076 84149 139 + . . scaffold1041 TRF Tandem_Repeat 88253 88290 76 + . . scaffold1041 GLEAN promoter 90677 91676 0.544804 + . ID=CGI_10014668; scaffold1041 GLEAN mRNA 91677 100821 0.544804 + . ID=CGI_10014668; scaffold1041 TRF Tandem_Repeat 91722 91758 56 + . . scaffold1041 TRF Tandem_Repeat 108538 108595 116 + . . scaffold1041 GLEAN mRNA 118158 123012 0.999672 - . ID=CGI_10014669; scaffold1041 GLEAN promoter 123013 124012 0.999672 - . ID=CGI_10014669; scaffold1041 GLEAN promoter 126022 127021 0.999964 + . ID=CGI_10014670; scaffold1041 GLEAN mRNA 127022 128785 0.999964 + . ID=CGI_10014670; scaffold1041 GLEAN promoter 137521 138520 0.828009 + . ID=CGI_10014671; scaffold1041 GLEAN mRNA 138521 140296 0.828009 + . ID=CGI_10014671; scaffold1041 GLEAN mRNA 145707 146084 0.999942 - . ID=CGI_10014672; scaffold1041 GLEAN promoter 146085 147084 0.999942 - . ID=CGI_10014672; scaffold1041 TRF Tandem_Repeat 156412 156510 98 + . . scaffold1041 GLEAN mRNA 162430 162795 0.965032 - . ID=CGI_10014673; scaffold1041 GLEAN promoter 162796 163795 0.965032 - . ID=CGI_10014673; scaffold1041 TRF Tandem_Repeat 181388 181418 62 + . . scaffold1041 TRF Tandem_Repeat 181418 181455 76 + . . scaffold1041 GLEAN promoter 189887 190886 0.999676 + . ID=CGI_10014674; scaffold1041 GLEAN mRNA 190887 201067 0.999676 + . ID=CGI_10014674; scaffold1041 WUBlastX LINE_L1-Tx1 209341 209682 59 - . . scaffold1041 WUBlastX LINE_L1-Tx1 209670 209861 36 - . . scaffold1041 TRF Tandem_Repeat 221074 221116 86 + . . scaffold1041 GLEAN mRNA 224638 226781 0.995391 - . ID=CGI_10014676; scaffold1041 GLEAN promoter 226782 227781 0.995391 - . ID=CGI_10014676; scaffold1041 GLEAN mRNA 227801 267863 0.995068 - . ID=CGI_10014677; scaffold1041 TRF Tandem_Repeat 230703 230938 185 + . . scaffold1041 TRF Tandem_Repeat 234058 234118 77 + . . scaffold1041 TRF Tandem_Repeat 235174 235220 94 + . . scaffold1041 TRF Tandem_Repeat 249769 249811 86 + . . scaffold1041 TRF Tandem_Repeat 255459 255485 54 + . . scaffold1041 TRF Tandem_Repeat 263361 263403 86 + . . scaffold1041 TRF Tandem_Repeat 267392 267446 83 + . . scaffold1041 GLEAN promoter 267829 268828 0.918355 + . ID=CGI_10014678; scaffold1041 GLEAN promoter 267864 268863 0.995068 - . ID=CGI_10014677; scaffold1041 GLEAN mRNA 268829 279528 0.918355 + . ID=CGI_10014678; scaffold1041 GLEAN mRNA 274711 282083 0.544852 - . ID=CGI_10014679; scaffold1041 TRF Tandem_Repeat 274968 274995 56 + . . scaffold1041 GLEAN promoter 281819 282818 1 + . ID=CGI_10014680; scaffold1041 GLEAN promoter 282084 283083 0.544852 - . ID=CGI_10014679; scaffold1041 GLEAN mRNA 282819 291722 1 + . ID=CGI_10014680; scaffold1041 GLEAN mRNA 294420 297225 0.614409 - . ID=CGI_10014681; scaffold1041 WUBlastX LINE_L1 294654 294809 21 - . . scaffold1041 GLEAN promoter 297226 298225 0.614409 - . ID=CGI_10014681; scaffold1041 TRF Tandem_Repeat 299445 299482 76 + . . scaffold1041 GLEAN promoter 301166 302165 1 + . ID=CGI_10014682; scaffold1041 GLEAN mRNA 302166 307996 1 + . ID=CGI_10014682; scaffold1041 TRF Tandem_Repeat 304405 304453 89 + . . scaffold1041 TRF Tandem_Repeat 307498 307535 69 + . . scaffold1041 WUBlastX LINE_RTE-X 309621 309938 72 - . . scaffold1041 WUBlastX LINE_RTE-X 309639 309815 76 - . . scaffold1041 WUBlastX LINE_RTE-X 310601 311422 318 - . . scaffold1041 WUBlastX LINE_RTE-X 310685 311566 188 - . . scaffold1041 WUBlastX LINE_L2 311421 311606 32 - . . scaffold1041 GLEAN promoter 312409 313408 0.999971 + . ID=CGI_10014683; scaffold1041 GLEAN mRNA 313409 314859 0.999971 + . ID=CGI_10014683; scaffold1041 GLEAN mRNA 315488 316218 1 - . ID=CGI_10014684; scaffold1041 GLEAN promoter 316219 317218 1 - . ID=CGI_10014684; scaffold1041 TRF Tandem_Repeat 317656 317807 181 + . . scaffold1041 TRF Tandem_Repeat 317656 317870 186 + . . scaffold1041 GLEAN promoter 319225 320224 1 + . ID=CGI_10014685; scaffold1041 GLEAN mRNA 320225 321378 1 + . ID=CGI_10014685; scaffold1041 GLEAN mRNA 322874 334809 1 - . ID=CGI_10014686; scaffold1041 TRF Tandem_Repeat 326620 326653 68 + . . scaffold1041 TRF Tandem_Repeat 329411 329495 118 + . . scaffold1041 TRF Tandem_Repeat 334009 334240 87 + . . scaffold1041 TRF Tandem_Repeat 334032 334172 94 + . . scaffold1041 TRF Tandem_Repeat 334082 334233 91 + . . scaffold1041 GLEAN promoter 334810 335809 1 - . ID=CGI_10014686; scaffold1041 GLEAN promoter 335824 336823 0.648545 + . ID=CGI_10014687; scaffold1041 GLEAN mRNA 336824 342927 0.648545 + . ID=CGI_10014687; scaffold1041 GLEAN mRNA 344842 351740 1 - . ID=CGI_10014688; scaffold1041 GLEAN promoter 346046 347045 0.999676 + . ID=CGI_10014689; scaffold1041 GLEAN mRNA 347046 355039 0.999676 + . ID=CGI_10014689; scaffold1041 GLEAN promoter 351741 352740 1 - . ID=CGI_10014688; scaffold1041 TRF Tandem_Repeat 356747 357604 1105 + . . scaffold1041 TRF Tandem_Repeat 362768 362810 54 + . . scaffold1041 GLEAN promoter 364236 365235 0.64346 + . ID=CGI_10014690; scaffold1041 GLEAN mRNA 365236 369539 0.64346 + . ID=CGI_10014690; scaffold1041 GLEAN promoter 369631 370630 0.999996 + . ID=CGI_10014691; scaffold1041 GLEAN mRNA 370631 370948 0.999996 + . ID=CGI_10014691; scaffold1041 TRF Tandem_Repeat 373341 374375 1258 + . . scaffold1041 WUBlastX LINE_RTE-BovB 375043 375168 40 + . . scaffold1041 WUBlastX LINE_RTE-BovB 375206 375502 21 + . . scaffold1041 WUBlastX LINE_RTE-BovB 375683 375808 38 + . . scaffold1041 WUBlastX LINE_RTE-BovB 376229 376375 48 + . . scaffold1041 TRF Tandem_Repeat 381592 381645 101 + . . scaffold1041 TRF Tandem_Repeat 385471 385537 134 + . . scaffold1041 TRF Tandem_Repeat 406310 406334 50 + . . scaffold1042 WUBlastX LINE_RTE-BovB 5 247 64 - . . scaffold1042 WUBlastX LINE_RTE-BovB 44 253 78 - . . scaffold1042 WUBlastX LINE_RTE-BovB 265 384 49 - . . scaffold1045 WUBlastX LTR_Ngaro 1348 1467 50 - . . scaffold1045 TRF Tandem_Repeat 8509 8558 59 + . . scaffold1045 TRF Tandem_Repeat 13101 13187 88 + . . scaffold1045 TRF Tandem_Repeat 53675 53712 67 + . . scaffold1045 GLEAN mRNA 58897 72575 0.494686 - . ID=CGI_10004646; scaffold1045 TRF Tandem_Repeat 66413 66470 116 + . . scaffold1045 TRF Tandem_Repeat 67083 67137 103 + . . scaffold1045 GLEAN promoter 72576 73575 0.494686 - . ID=CGI_10004646; scaffold1045 GLEAN promoter 72787 73786 0.999117 + . ID=CGI_10004647; scaffold1045 GLEAN mRNA 73787 82720 0.999117 + . ID=CGI_10004647; scaffold1045 TRF Tandem_Repeat 77862 77928 80 + . . scaffold1045 TRF Tandem_Repeat 77862 77932 133 + . . scaffold1045 WUBlastX RC_Helitron 86197 91923 3729 - . . scaffold1045 WUBlastX RC_Helitron 90559 92196 271 - . . scaffold1045 WUBlastX RC_Helitron 92230 92838 192 - . . scaffold1045 WUBlastX RC_Helitron 92725 93600 219 - . . scaffold1045 WUBlastX RC_Helitron 93025 93750 239 - . . scaffold1045 TRF Tandem_Repeat 94074 94322 221 + . . scaffold1045 TRF Tandem_Repeat 94141 94286 98 + . . scaffold1045 TRF Tandem_Repeat 94343 94901 1046 + . . scaffold1045 TRF Tandem_Repeat 94346 94894 248 + . . scaffold1045 TRF Tandem_Repeat 98389 99436 1397 + . . scaffold105 GLEAN mRNA 328 2580 0.999547 - . ID=CGI_10015737; scaffold105 GLEAN promoter 2581 3580 0.999547 - . ID=CGI_10015737; scaffold105 GLEAN promoter 3874 4873 0.998049 + . ID=CGI_10015738; scaffold105 TRF Tandem_Repeat 4678 4723 92 + . . scaffold105 GLEAN mRNA 4874 57624 0.998049 + . ID=CGI_10015738; scaffold105 TRF Tandem_Repeat 21616 21667 68 + . . scaffold105 TRF Tandem_Repeat 21625 21674 64 + . . scaffold105 TRF Tandem_Repeat 32392 32669 522 + . . scaffold105 TRF Tandem_Repeat 43531 43681 83 + . . scaffold105 GLEAN promoter 57677 58676 1 + . ID=CGI_10015739; scaffold105 GLEAN mRNA 58677 61504 1 + . ID=CGI_10015739; scaffold105 GLEAN promoter 66380 67379 0.718564 + . ID=CGI_10015740; scaffold105 GLEAN mRNA 67380 75279 0.718564 + . ID=CGI_10015740; scaffold105 TRF Tandem_Repeat 71025 71069 90 + . . scaffold105 GLEAN mRNA 81291 119935 0.999898 - . ID=CGI_10015741; scaffold105 TRF Tandem_Repeat 83769 83805 56 + . . scaffold105 TRF Tandem_Repeat 86093 86197 192 + . . scaffold105 GLEAN promoter 90039 91038 0.999998 + . ID=CGI_10015742; scaffold105 GLEAN mRNA 91039 91959 0.999998 + . ID=CGI_10015742; scaffold105 GLEAN promoter 119936 120935 0.999898 - . ID=CGI_10015741; scaffold105 GLEAN mRNA 127381 131305 1 - . ID=CGI_10015743; scaffold105 GLEAN promoter 131306 132305 1 - . ID=CGI_10015743; scaffold105 GLEAN promoter 132814 133813 0.889923 + . ID=CGI_10015744; scaffold105 TRF Tandem_Repeat 133723 133792 140 + . . scaffold105 GLEAN mRNA 133814 134558 0.889923 + . ID=CGI_10015744; scaffold105 GLEAN mRNA 135643 136499 1 - . ID=CGI_10015745; scaffold105 GLEAN promoter 136500 137499 1 - . ID=CGI_10015745; scaffold105 GLEAN promoter 141516 142515 0.721075 + . ID=CGI_10015746; scaffold105 GLEAN mRNA 142516 160700 0.721075 + . ID=CGI_10015746; scaffold105 TRF Tandem_Repeat 163863 164160 432 + . . scaffold105 TRF Tandem_Repeat 164017 164224 175 + . . scaffold105 TRF Tandem_Repeat 164219 164460 244 + . . scaffold105 TRF Tandem_Repeat 164895 165055 128 + . . scaffold105 TRF Tandem_Repeat 165241 165789 443 + . . scaffold105 TRF Tandem_Repeat 165263 165767 752 + . . scaffold105 TRF Tandem_Repeat 166510 166573 110 + . . scaffold105 GLEAN mRNA 173586 174922 1 - . ID=CGI_10015747; scaffold105 GLEAN promoter 174923 175922 1 - . ID=CGI_10015747; scaffold105 GLEAN promoter 212651 213650 0.999979 + . ID=CGI_10015748; scaffold105 GLEAN mRNA 213651 213851 0.999979 + . ID=CGI_10015748; scaffold105 TRF Tandem_Repeat 216899 216951 106 + . . scaffold105 GLEAN mRNA 221137 224640 1 - . ID=CGI_10015749; scaffold105 GLEAN promoter 224641 225640 1 - . ID=CGI_10015749; scaffold105 GLEAN promoter 229753 230752 1 + . ID=CGI_10015750; scaffold105 GLEAN mRNA 230753 232045 1 + . ID=CGI_10015750; scaffold105 WUBlastX LINE_RTE-X 232075 232503 108 + . . scaffold105 TRF Tandem_Repeat 234997 235041 54 + . . scaffold105 WUBlastX LINE_RTE-X 235775 236350 250 + . . scaffold105 WUBlastX LINE_RTE-X 236370 236795 155 + . . scaffold105 GLEAN mRNA 241276 247909 1 - . ID=CGI_10015752; scaffold105 GLEAN promoter 247910 248909 1 - . ID=CGI_10015752; scaffold105 TRF Tandem_Repeat 259426 259469 88 + . . scaffold105 TRF Tandem_Repeat 259787 259826 80 + . . scaffold105 WUBlastX DNA_TcMar-Marin 264470 264919 86 + . . scaffold105 GLEAN promoter 276858 277857 0.558394 + . ID=CGI_10015753; scaffold105 GLEAN mRNA 277858 278244 0.558394 + . ID=CGI_10015753; scaffold105 TRF Tandem_Repeat 284796 284830 61 + . . scaffold105 TRF Tandem_Repeat 299854 299896 86 + . . scaffold105 WUBlastX LTR_Pao 301259 301516 171 - . . scaffold105 WUBlastX LTR_Pao 301438 301845 190 - . . scaffold105 WUBlastX LTR_Pao 301522 301848 228 - . . scaffold105 WUBlastX LTR_Pao 301830 302387 319 - . . scaffold105 WUBlastX LTR_Pao 302363 303130 368 - . . scaffold105 WUBlastX LTR_Pao 303157 303651 76 - . . scaffold105 TRF Tandem_Repeat 305185 305218 50 + . . scaffold105 TRF Tandem_Repeat 305188 305231 70 + . . scaffold105 GLEAN promoter 308088 309087 0.999999 + . ID=CGI_10015754; scaffold105 GLEAN mRNA 309088 309474 0.999999 + . ID=CGI_10015754; scaffold105 GLEAN promoter 315924 316923 1 + . ID=CGI_10015755; scaffold105 GLEAN mRNA 316924 320165 1 + . ID=CGI_10015755; scaffold105 WUBlastX DNA_hAT-Ac 317526 317606 56 - . . scaffold105 WUBlastX DNA_hAT-Ac 317633 317767 64 - . . scaffold105 TRF Tandem_Repeat 319192 319537 277 + . . scaffold105 TRF Tandem_Repeat 319603 319652 100 + . . scaffold105 GLEAN mRNA 321605 329450 0.979754 - . ID=CGI_10015756; scaffold105 GLEAN promoter 329451 330450 0.979754 - . ID=CGI_10015756; scaffold105 TRF Tandem_Repeat 342495 342551 114 + . . scaffold105 TRF Tandem_Repeat 343210 343315 117 + . . scaffold105 TRF Tandem_Repeat 343210 343329 120 + . . scaffold105 TRF Tandem_Repeat 344101 344143 59 + . . scaffold105 TRF Tandem_Repeat 384445 384487 86 + . . scaffold105 TRF Tandem_Repeat 388957 388991 54 + . . scaffold105 GLEAN promoter 391201 392200 0.99959 + . ID=CGI_10015757; scaffold105 GLEAN mRNA 392201 411943 0.99959 + . ID=CGI_10015757; scaffold105 TRF Tandem_Repeat 392844 392869 52 + . . scaffold105 TRF Tandem_Repeat 413242 413313 90 + . . scaffold105 TRF Tandem_Repeat 413251 413322 90 + . . scaffold105 TRF Tandem_Repeat 414108 414159 50 + . . scaffold105 TRF Tandem_Repeat 414180 414278 64 + . . scaffold105 TRF Tandem_Repeat 414208 414300 66 + . . scaffold105 TRF Tandem_Repeat 414573 414616 88 + . . scaffold105 WUBlastX LINE_RTE-X 419676 420029 84 - . . scaffold105 WUBlastX LINE_RTE-X 419676 419963 115 - . . scaffold105 WUBlastX LINE_RTE-X 419972 420070 38 - . . scaffold105 WUBlastX LINE_RTE-X 420079 420366 52 - . . scaffold105 WUBlastX LINE_RTE-X 424015 425427 490 - . . scaffold105 WUBlastX LINE_RTE-X 425418 426455 471 - . . scaffold105 WUBlastX LINE_RTE-X 425430 427247 435 - . . scaffold105 TRF Tandem_Repeat 435503 437253 1165 + . . scaffold105 GLEAN mRNA 439762 440894 1 - . ID=CGI_10015758; scaffold105 TRF Tandem_Repeat 440625 440683 61 + . . scaffold105 GLEAN promoter 440895 441772 1 - . ID=CGI_10015758; scaffold1050 GLEAN mRNA 2061 6672 0.811719 - . ID=CGI_10009163; scaffold1050 GLEAN promoter 6673 7672 0.811719 - . ID=CGI_10009163; scaffold1050 TRF Tandem_Repeat 9585 9611 54 + . . scaffold1050 GLEAN mRNA 9921 16394 1 - . ID=CGI_10009164; scaffold1050 GLEAN promoter 16395 17394 1 - . ID=CGI_10009164; scaffold1050 WUBlastX LINE_RTE-BovB 16964 17176 27 - . . scaffold1050 WUBlastX LINE_RTE-BovB 17048 17167 51 - . . scaffold1050 WUBlastX LINE_RTE-BovB 17112 17327 43 - . . scaffold1050 WUBlastX LINE_RTE-BovB 17423 17803 179 - . . scaffold1050 WUBlastX LINE_RTE-BovB 17662 17901 71 - . . scaffold1050 GLEAN promoter 20001 21000 0.593024 + . ID=CGI_10009165; scaffold1050 GLEAN mRNA 21001 34286 0.593024 + . ID=CGI_10009165; scaffold1050 TRF Tandem_Repeat 23556 23584 58 + . . scaffold1050 TRF Tandem_Repeat 24424 24500 136 + . . scaffold1050 GLEAN mRNA 35828 37555 0.528485 - . ID=CGI_10009166; scaffold1050 GLEAN promoter 37556 38555 0.528485 - . ID=CGI_10009166; scaffold1050 GLEAN promoter 48982 49981 0.998527 + . ID=CGI_10009167; scaffold1050 GLEAN mRNA 49982 75689 0.998527 + . ID=CGI_10009167; scaffold1050 GLEAN mRNA 76577 78682 1 - . ID=CGI_10009168; scaffold1050 GLEAN promoter 78683 79682 1 - . ID=CGI_10009168; scaffold1050 GLEAN promoter 80116 81115 0.999462 + . ID=CGI_10009169; scaffold1050 GLEAN mRNA 81116 87242 0.999462 + . ID=CGI_10009169; scaffold1050 TRF Tandem_Repeat 85298 85448 293 + . . scaffold1050 GLEAN promoter 88236 89235 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 88427 88570 238 + . . scaffold1050 GLEAN mRNA 89236 105064 0.998849 + . ID=CGI_10009170; scaffold1050 TRF Tandem_Repeat 90118 90217 200 + . . scaffold1050 TRF Tandem_Repeat 93205 93236 64 + . . scaffold1050 TRF Tandem_Repeat 93771 93804 68 + . . scaffold1050 TRF Tandem_Repeat 99198 99230 66 + . . scaffold1050 TRF Tandem_Repeat 101889 102190 388 + . . scaffold1050 TRF Tandem_Repeat 101889 102196 490 + . . scaffold1050 TRF Tandem_Repeat 103471 103832 532 + . . scaffold1050 TRF Tandem_Repeat 103487 103832 422 + . . scaffold1050 TRF Tandem_Repeat 104689 104724 72 + . . scaffold1050 GLEAN mRNA 105776 109454 0.999476 - . ID=CGI_10009171; scaffold1050 GLEAN promoter 109455 110454 0.999476 - . ID=CGI_10009171; scaffold1050 GLEAN promoter 109488 110487 0.740819 + . ID=CGI_10009172; scaffold1050 TRF Tandem_Repeat 109648 109687 80 + . . scaffold1050 GLEAN mRNA 110488 131637 0.740819 + . ID=CGI_10009172; scaffold1050 WUBlastX LINE_L2 115644 115997 96 + . . scaffold1050 WUBlastX LINE_L2 115644 116192 63 + . . scaffold1050 TRF Tandem_Repeat 119405 119446 61 + . . scaffold1050 GLEAN mRNA 119751 123083 0.919951 - . ID=CGI_10009173; scaffold1050 GLEAN promoter 123084 124083 0.919951 - . ID=CGI_10009173; scaffold1050 GLEAN promoter 131812 132811 0.84299 + . ID=CGI_10009174; scaffold1050 GLEAN mRNA 132812 136601 0.84299 + . ID=CGI_10009174; scaffold1050 GLEAN promoter 137051 138050 0.995345 + . ID=CGI_10009175; scaffold1050 GLEAN mRNA 138051 138453 0.995345 + . ID=CGI_10009175; scaffold1050 GLEAN mRNA 141570 148062 0.999095 - . ID=CGI_10009176; scaffold1050 TRF Tandem_Repeat 146193 146226 68 + . . scaffold1050 GLEAN promoter 148063 149062 0.999095 - . ID=CGI_10009176; scaffold1050 TRF Tandem_Repeat 150275 150313 78 + . . scaffold1050 TRF Tandem_Repeat 153974 154022 98 + . . scaffold1050 TRF Tandem_Repeat 158908 158942 70 + . . scaffold1050 GLEAN promoter 159351 160350 0.259812 + . ID=CGI_10009177; scaffold1050 GLEAN mRNA 160351 184049 0.259812 + . ID=CGI_10009177; scaffold1050 TRF Tandem_Repeat 168027 168074 51 + . . scaffold1050 TRF Tandem_Repeat 168027 168071 72 + . . scaffold1050 GLEAN mRNA 172793 176047 0.795767 - . ID=CGI_10009178; scaffold1050 GLEAN promoter 176048 177047 0.795767 - . ID=CGI_10009178; scaffold1050 GLEAN promoter 183218 184217 0.998647 + . ID=CGI_10009179; scaffold1050 GLEAN mRNA 184218 192820 0.998647 + . ID=CGI_10009179; scaffold1050 TRF Tandem_Repeat 184507 184607 76 + . . scaffold1050 TRF Tandem_Repeat 184619 184791 150 + . . scaffold1050 GLEAN promoter 193855 194854 0.916666 + . ID=CGI_10009180; scaffold1050 GLEAN mRNA 194855 208645 0.916666 + . ID=CGI_10009180; scaffold1050 TRF Tandem_Repeat 198970 198997 56 + . . scaffold1050 TRF Tandem_Repeat 204124 204294 153 + . . scaffold1050 TRF Tandem_Repeat 204124 204294 198 + . . scaffold1050 TRF Tandem_Repeat 204293 204480 218 + . . scaffold1050 TRF Tandem_Repeat 204363 204480 148 + . . scaffold1050 GLEAN mRNA 209794 213078 1 - . ID=CGI_10009181; scaffold1050 GLEAN promoter 213079 214078 1 - . ID=CGI_10009181; scaffold1050 GLEAN promoter 213951 214950 0.349007 + . ID=CGI_10009182; scaffold1050 GLEAN mRNA 214951 218048 0.349007 + . ID=CGI_10009182; scaffold1050 WUBlastX DNA_hAT 215008 215352 180 + . . scaffold1050 WUBlastX DNA_hAT 215737 216276 126 + . . scaffold1050 WUBlastX DNA_hAT 216432 216644 81 + . . scaffold1050 WUBlastX DNA_hAT 216944 217096 40 + . . scaffold1050 WUBlastX DNA_hAT 217320 217526 53 + . . scaffold1050 WUBlastX DNA_hAT 217362 217526 80 + . . scaffold1050 WUBlastX DNA_hAT 217824 218045 98 + . . scaffold1050 WUBlastX LINE_RTE-X 222725 222937 45 - . . scaffold1050 WUBlastX LINE_RTE-X 222848 222955 44 - . . scaffold1050 WUBlastX LINE_RTE-X 222954 223238 41 - . . scaffold1050 WUBlastX LINE_RTE-X 222963 223178 72 - . . scaffold1050 TRF Tandem_Repeat 224272 224383 107 + . . scaffold1052 GLEAN mRNA 1917 38966 0.980203 - . ID=CGI_10005467; scaffold1052 TRF Tandem_Repeat 3776 3834 82 + . . scaffold1052 TRF Tandem_Repeat 3776 3841 107 + . . scaffold1052 TRF Tandem_Repeat 3779 3840 63 + . . scaffold1052 WUBlastX LTR_DIRS 34967 35851 388 - . . scaffold1052 WUBlastX LTR_DIRS 35731 37764 1220 - . . scaffold1052 WUBlastX LTR_DIRS 37764 38465 182 - . . scaffold1052 GLEAN promoter 38967 39966 0.980203 - . ID=CGI_10005467; scaffold1052 GLEAN mRNA 39400 55337 0.982141 - . ID=CGI_10005468; scaffold1052 TRF Tandem_Repeat 47243 47288 53 + . . scaffold1052 TRF Tandem_Repeat 51503 51544 57 + . . scaffold1052 GLEAN promoter 55187 56186 1 + . ID=CGI_10005469; scaffold1052 GLEAN promoter 55338 56337 0.982141 - . ID=CGI_10005468; scaffold1052 GLEAN mRNA 56187 57125 1 + . ID=CGI_10005469; scaffold1052 GLEAN mRNA 59893 79725 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 74918 75502 53 - . . scaffold1052 WUBlastX LINE_L2 75044 75394 87 - . . scaffold1052 WUBlastX LINE_L2 75143 75502 109 - . . scaffold1052 WUBlastX LINE_RTE-X 75979 77055 367 - . . scaffold1052 WUBlastX LINE_RTE-X 78031 79116 373 - . . scaffold1052 WUBlastX LINE_L2 79154 79276 27 - . . scaffold1052 WUBlastX LINE_L2 79658 80020 60 - . . scaffold1052 GLEAN promoter 79726 80725 0.988141 - . ID=CGI_10005470; scaffold1052 WUBlastX LINE_L2 79733 80020 93 - . . scaffold1052 WUBlastX LINE_L2 79733 80077 61 - . . scaffold1052 WUBlastX LINE_L2 79895 80110 34 - . . scaffold1052 GLEAN promoter 80379 81378 1 + . ID=CGI_10005471; scaffold1052 WUBlastX LINE_RTE-X 80399 80563 98 + . . scaffold1052 GLEAN mRNA 81379 91642 1 + . ID=CGI_10005471; scaffold1052 TRF Tandem_Repeat 86404 86472 52 + . . scaffold1052 TRF Tandem_Repeat 86715 86772 91 + . . scaffold1052 TRF Tandem_Repeat 86716 86769 74 + . . scaffold1052 TRF Tandem_Repeat 89725 90410 1051 + . . scaffold1052 GLEAN promoter 93331 94330 0.841132 + . ID=CGI_10005472; scaffold1052 GLEAN mRNA 94331 113345 0.841132 + . ID=CGI_10005472; scaffold1052 TRF Tandem_Repeat 110982 111687 1047 + . . scaffold1052 GLEAN promoter 112796 113795 1 + . ID=CGI_10005473; scaffold1052 GLEAN mRNA 113796 114468 1 + . ID=CGI_10005473; scaffold1052 TRF Tandem_Repeat 116489 116514 52 + . . scaffold1052 TRF Tandem_Repeat 121776 121826 102 + . . scaffold1052 TRF Tandem_Repeat 122112 122526 471 + . . scaffold1052 TRF Tandem_Repeat 122113 122526 473 + . . scaffold1052 TRF Tandem_Repeat 122201 122270 53 + . . scaffold1052 TRF Tandem_Repeat 123074 123247 169 + . . scaffold1053 GLEAN mRNA 8937 30128 0.621486 - . ID=CGI_10014292; scaffold1053 TRF Tandem_Repeat 17465 17508 61 + . . scaffold1053 TRF Tandem_Repeat 19562 20976 1147 + . . scaffold1053 TRF Tandem_Repeat 19579 20976 1019 + . . scaffold1053 WUBlastX LINE_Penelope 25832 26269 24 + . . scaffold1053 TRF Tandem_Repeat 29672 29712 82 + . . scaffold1053 GLEAN promoter 30129 31128 0.621486 - . ID=CGI_10014292; scaffold1053 GLEAN promoter 36316 37315 0.909113 + . ID=CGI_10014293; scaffold1053 GLEAN mRNA 37316 72199 0.909113 + . ID=CGI_10014293; scaffold1053 TRF Tandem_Repeat 40500 40549 55 + . . scaffold1053 TRF Tandem_Repeat 46266 46353 167 + . . scaffold1053 TRF Tandem_Repeat 46267 46340 67 + . . scaffold1053 TRF Tandem_Repeat 50380 50417 58 + . . scaffold1053 TRF Tandem_Repeat 59415 59457 50 + . . scaffold1053 GLEAN mRNA 60551 60757 0.590571 - . ID=CGI_10014294; scaffold1053 GLEAN promoter 60758 61757 0.590571 - . ID=CGI_10014294; scaffold1053 TRF Tandem_Repeat 60813 60939 182 + . . scaffold1053 TRF Tandem_Repeat 71810 71934 214 + . . scaffold1053 TRF Tandem_Repeat 74862 74927 132 + . . scaffold1053 TRF Tandem_Repeat 75035 75076 84 + . . scaffold1053 TRF Tandem_Repeat 75938 75967 51 + . . scaffold1053 TRF Tandem_Repeat 77431 77477 58 + . . scaffold1053 TRF Tandem_Repeat 77546 77663 184 + . . scaffold1053 TRF Tandem_Repeat 79834 79886 97 + . . scaffold1053 TRF Tandem_Repeat 141316 141540 130 + . . scaffold1053 GLEAN mRNA 145137 152328 0.648402 - . ID=CGI_10014295; scaffold1053 TRF Tandem_Repeat 150687 151608 1192 + . . scaffold1053 TRF Tandem_Repeat 151814 151845 55 + . . scaffold1053 GLEAN promoter 152329 153328 0.648402 - . ID=CGI_10014295; scaffold1053 TRF Tandem_Repeat 160780 160836 68 + . . scaffold1053 TRF Tandem_Repeat 167487 167548 90 + . . scaffold1053 WUBlastX LINE_RTE-BovB 193525 193890 90 + . . scaffold1053 WUBlastX LINE_RTE-BovB 193597 194391 485 + . . scaffold1053 WUBlastX LINE_RTE-BovB 198272 199717 259 + . . scaffold1053 WUBlastX LINE_RTE-BovB 198701 199735 449 + . . scaffold1053 TRF Tandem_Repeat 201251 201299 62 + . . scaffold1053 TRF Tandem_Repeat 206876 206934 109 + . . scaffold1053 TRF Tandem_Repeat 207187 207251 130 + . . scaffold1053 WUBlastX LTR_Pao 208990 209202 44 + . . scaffold1053 WUBlastX LTR_Pao 209029 210396 225 + . . scaffold1053 WUBlastX LTR_Pao 209281 213366 2970 + . . scaffold1053 WUBlastX LTR_Pao 213366 214466 1161 + . . scaffold1053 WUBlastX LTR_Pao 214465 214554 38 + . . scaffold1053 TRF Tandem_Repeat 225728 226231 695 + . . scaffold1053 TRF Tandem_Repeat 225728 226231 690 + . . scaffold1053 GLEAN promoter 230960 231959 0.97566 + . ID=CGI_10014296; scaffold1053 GLEAN mRNA 231960 243664 0.97566 + . ID=CGI_10014296; scaffold1053 TRF Tandem_Repeat 232802 233333 839 + . . scaffold1053 TRF Tandem_Repeat 234236 234868 615 + . . scaffold1053 TRF Tandem_Repeat 234241 234868 802 + . . scaffold1053 TRF Tandem_Repeat 234243 234868 735 + . . scaffold1053 TRF Tandem_Repeat 240982 241043 90 + . . scaffold1053 GLEAN mRNA 247636 258427 0.856061 - . ID=CGI_10014297; scaffold1053 TRF Tandem_Repeat 254139 254223 152 + . . scaffold1053 GLEAN promoter 258428 259427 0.856061 - . ID=CGI_10014297; scaffold1053 TRF Tandem_Repeat 290803 291039 411 + . . scaffold1053 TRF Tandem_Repeat 298429 298484 112 + . . scaffold1053 GLEAN mRNA 299038 331134 0.830467 - . ID=CGI_10014298; scaffold1053 TRF Tandem_Repeat 309358 309419 70 + . . scaffold1053 TRF Tandem_Repeat 318634 318818 158 + . . scaffold1053 TRF Tandem_Repeat 318673 318824 177 + . . scaffold1053 TRF Tandem_Repeat 319896 320249 184 + . . scaffold1053 TRF Tandem_Repeat 319896 320248 251 + . . scaffold1053 TRF Tandem_Repeat 319896 320246 214 + . . scaffold1053 WUBlastX LINE_RTE-X 328725 328949 48 + . . scaffold1053 WUBlastX LINE_RTE-X 328934 329065 68 + . . scaffold1053 WUBlastX LINE_RTE-X 328940 329182 54 + . . scaffold1053 GLEAN promoter 331135 332134 0.830467 - . ID=CGI_10014298; scaffold1053 TRF Tandem_Repeat 338846 338912 116 + . . scaffold1053 TRF Tandem_Repeat 342504 342552 98 + . . scaffold1053 TRF Tandem_Repeat 344530 344573 88 + . . scaffold1053 TRF Tandem_Repeat 349144 349199 112 + . . scaffold1053 TRF Tandem_Repeat 350486 350512 54 + . . scaffold1053 TRF Tandem_Repeat 352140 352169 60 + . . scaffold1053 TRF Tandem_Repeat 353876 353922 94 + . . scaffold1053 TRF Tandem_Repeat 357095 357431 392 + . . scaffold1053 TRF Tandem_Repeat 357248 357412 85 + . . scaffold1053 WUBlastX LINE_L2 367720 368274 198 - . . scaffold1053 WUBlastX LINE_L2 368068 368316 52 - . . scaffold1053 GLEAN mRNA 370340 371596 0.999372 - . ID=CGI_10014299; scaffold1053 GLEAN promoter 371597 372596 0.999372 - . ID=CGI_10014299; scaffold1053 GLEAN mRNA 371961 384950 0.906567 - . ID=CGI_10014300; scaffold1053 TRF Tandem_Repeat 375965 376186 340 + . . scaffold1053 GLEAN promoter 384951 385950 0.906567 - . ID=CGI_10014300; scaffold1053 WUBlastX LINE_RTE-X 388108 388395 45 - . . scaffold1053 WUBlastX LINE_RTE-X 388252 388431 75 - . . scaffold1053 WUBlastX LINE_RTE-X 388252 388392 94 - . . scaffold1053 WUBlastX LINE_RTE-X 388446 388550 52 - . . scaffold1054 GLEAN mRNA 2164 8664 0.738574 - . ID=CGI_10012956; scaffold1054 GLEAN promoter 8665 9664 0.738574 - . ID=CGI_10012956; scaffold1054 WUBlastX LINE_L1-Tx1 14416 15264 158 + . . scaffold1054 TRF Tandem_Repeat 15786 15830 90 + . . scaffold1054 TRF Tandem_Repeat 16801 17603 1118 + . . scaffold1054 WUBlastX DNA_TcMar-Marin 19341 19898 251 + . . scaffold1054 WUBlastX DNA_TcMar-Marin 19885 20007 37 + . . scaffold1054 WUBlastX DNA_TcMar-Marin 20198 20602 217 + . . scaffold1054 WUBlastX LTR_DIRS 24359 25057 195 + . . scaffold1054 WUBlastX LTR_DIRS 24551 25111 225 + . . scaffold1054 WUBlastX LTR_DIRS 25138 26409 483 + . . scaffold1054 WUBlastX LTR_DIRS 26373 26948 438 + . . scaffold1054 WUBlastX LTR_DIRS 26956 27414 209 + . . scaffold1054 WUBlastX LTR_DIRS 27031 27417 256 + . . scaffold1054 WUBlastX LTR_DIRS 27426 27752 113 + . . scaffold1054 WUBlastX LTR_DIRS 27753 27809 25 + . . scaffold1054 WUBlastX LINE_L1-Tx1 28128 28853 67 + . . scaffold1054 WUBlastX LINE_L1 28239 28886 108 + . . scaffold1054 WUBlastX LINE_L1-Tx1 32232 33206 407 + . . scaffold1054 WUBlastX LINE_L1-Tx1 33172 34440 880 + . . scaffold1054 WUBlastX LINE_L1-Tx1 34443 36254 600 + . . scaffold1054 WUBlastX LTR_DIRS 36644 36757 66 + . . scaffold1054 WUBlastX LINE_Penelope 40170 40718 35 - . . scaffold1054 WUBlastX DNA_TcMar-Tigge 41562 42401 79 - . . scaffold1054 WUBlastX DNA_TcMar-Fot1 41751 42125 97 - . . scaffold1054 WUBlastX DNA_TcMar-Tc2 41820 42467 119 - . . scaffold1054 TRF Tandem_Repeat 45184 45346 163 + . . scaffold1054 TRF Tandem_Repeat 45216 45369 136 + . . scaffold1054 WUBlastX LTR_Ngaro 45521 46543 272 - . . scaffold1054 WUBlastX LTR_Ngaro 46483 48054 841 - . . scaffold1054 WUBlastX LTR_Ngaro 46489 47802 998 - . . scaffold1054 WUBlastX LTR_Ngaro 48142 49104 137 - . . scaffold1054 TRF Tandem_Repeat 55817 56575 978 + . . scaffold1054 TRF Tandem_Repeat 55817 56575 949 + . . scaffold1054 TRF Tandem_Repeat 60811 60892 85 + . . scaffold1054 TRF Tandem_Repeat 69863 70584 920 + . . scaffold1054 TRF Tandem_Repeat 80750 80814 103 + . . scaffold1054 TRF Tandem_Repeat 80750 80805 58 + . . scaffold1054 TRF Tandem_Repeat 80751 80814 65 + . . scaffold1054 TRF Tandem_Repeat 89773 89820 51 + . . scaffold1054 TRF Tandem_Repeat 89773 89806 59 + . . scaffold1054 TRF Tandem_Repeat 101057 101125 138 + . . scaffold1054 TRF Tandem_Repeat 105244 107065 2747 + . . scaffold1054 TRF Tandem_Repeat 109895 110145 367 + . . scaffold1054 WUBlastX LTR_Gypsy-Cigr 110303 110830 150 + . . scaffold1054 WUBlastX LTR_Gypsy 111211 111393 23 + . . scaffold1054 WUBlastX LTR_Gypsy 111274 111402 26 + . . scaffold1054 WUBlastX LTR_Gypsy 111283 111390 27 + . . scaffold1054 WUBlastX LTR_Gypsy-Cigr 111413 112738 631 + . . scaffold1054 WUBlastX LTR_Gypsy 112725 113618 486 + . . scaffold1054 WUBlastX LTR_Gypsy 112746 113828 344 + . . scaffold1054 WUBlastX LTR_Gypsy 113839 114300 228 + . . scaffold1054 WUBlastX LTR_Gypsy 113842 114432 206 + . . scaffold1054 WUBlastX LTR_Gypsy 113890 114270 312 + . . scaffold1054 WUBlastX LTR_Gypsy-Cigr 115276 115365 23 + . . scaffold1054 WUBlastX LINE_L1 116841 117050 33 - . . scaffold1054 WUBlastX LINE_L1 116889 117080 39 - . . scaffold1054 WUBlastX LINE_L1-Tx1 116889 117038 65 - . . scaffold1054 WUBlastX LINE_L1 116892 117116 22 - . . scaffold1054 WUBlastX LINE_L1-Tx1 117044 117160 22 - . . scaffold1054 WUBlastX LINE_L1 117199 117738 111 - . . scaffold1054 WUBlastX LINE_L1-Tx1 117199 117594 155 - . . scaffold1054 WUBlastX LINE_L1-Tx1 117582 117860 76 - . . scaffold1054 WUBlastX LINE_L1-Tx1 117806 118075 22 - . . scaffold1054 WUBlastX LINE_L1 117818 117898 25 - . . scaffold1054 WUBlastX LINE_L1-Tx1 118062 118196 58 - . . scaffold1054 WUBlastX DNA_TcMar-Tc1 119154 120104 507 + . . scaffold1054 WUBlastX LTR_Ngaro 120698 121786 289 + . . scaffold1054 WUBlastX LTR_Ngaro 121803 122144 115 + . . scaffold1054 WUBlastX LTR_Ngaro 121815 122099 127 + . . scaffold1054 WUBlastX LTR_Ngaro 122230 123021 316 + . . scaffold1054 TRF Tandem_Repeat 141365 141431 89 + . . scaffold1054 TRF Tandem_Repeat 147401 147451 77 + . . scaffold1054 TRF Tandem_Repeat 147833 147882 100 + . . scaffold1054 GLEAN mRNA 150201 152610 0.993236 - . ID=CGI_10012957; scaffold1054 GLEAN promoter 152611 153610 0.993236 - . ID=CGI_10012957; scaffold1054 TRF Tandem_Repeat 158489 158542 99 + . . scaffold1054 GLEAN promoter 160122 161121 0.999566 + . ID=CGI_10012958; scaffold1054 GLEAN promoter 160339 161338 0.999996 + . ID=CGI_10012959; scaffold1054 GLEAN mRNA 161122 161307 0.999566 + . ID=CGI_10012958; scaffold1054 GLEAN mRNA 161339 161671 0.999996 + . ID=CGI_10012959; scaffold1054 GLEAN mRNA 170203 170649 0.999999 - . ID=CGI_10012960; scaffold1054 GLEAN promoter 170650 171649 0.999999 - . ID=CGI_10012960; scaffold1054 TRF Tandem_Repeat 176060 176158 92 + . . scaffold1054 TRF Tandem_Repeat 176196 176341 139 + . . scaffold1054 TRF Tandem_Repeat 177418 177729 215 + . . scaffold1054 TRF Tandem_Repeat 177914 178276 204 + . . scaffold1054 TRF Tandem_Repeat 177958 178253 166 + . . scaffold1054 WUBlastX LINE_L1-Tx1 179182 179442 29 - . . scaffold1054 TRF Tandem_Repeat 197448 197477 60 + . . scaffold1054 GLEAN mRNA 202135 203257 0.999824 - . ID=CGI_10012961; scaffold1054 GLEAN promoter 203258 204257 0.999824 - . ID=CGI_10012961; scaffold1054 TRF Tandem_Repeat 205567 206032 790 + . . scaffold1054 TRF Tandem_Repeat 214875 215218 215 + . . scaffold1054 GLEAN promoter 216090 217089 0.992562 + . ID=CGI_10012962; scaffold1054 GLEAN mRNA 217090 236210 0.992562 + . ID=CGI_10012962; scaffold1054 TRF Tandem_Repeat 220657 220755 119 + . . scaffold1054 TRF Tandem_Repeat 228203 228589 461 + . . scaffold1054 TRF Tandem_Repeat 244004 244067 101 + . . scaffold1054 TRF Tandem_Repeat 245564 246818 1201 + . . scaffold1054 TRF Tandem_Repeat 245571 246509 1145 + . . scaffold1054 TRF Tandem_Repeat 250098 250188 76 + . . scaffold1054 TRF Tandem_Repeat 257345 257466 235 + . . scaffold1054 GLEAN promoter 263440 264439 0.889923 + . ID=CGI_10012963; scaffold1054 GLEAN mRNA 264440 285046 0.889923 + . ID=CGI_10012963; scaffold1054 TRF Tandem_Repeat 266281 266363 136 + . . scaffold1054 TRF Tandem_Repeat 271999 272103 63 + . . scaffold1054 TRF Tandem_Repeat 272000 272049 55 + . . scaffold1054 TRF Tandem_Repeat 273321 273374 90 + . . scaffold1054 GLEAN mRNA 274617 283441 0.999237 - . ID=CGI_10012964; scaffold1054 WUBlastX DNA_IS4EU 277077 277199 39 + . . scaffold1054 WUBlastX DNA_IS4EU 277098 277199 43 + . . scaffold1054 WUBlastX DNA_IS4EU 277567 277716 31 + . . scaffold1054 WUBlastX DNA_IS4EU 278100 278204 45 + . . scaffold1054 WUBlastX DNA_IS4EU 278481 278702 61 + . . scaffold1054 WUBlastX DNA_IS4EU 278514 278693 62 + . . scaffold1054 WUBlastX DNA_IS4EU 279053 279589 297 - . . scaffold1054 WUBlastX DNA_Kolobok-IS4 279056 279715 282 - . . scaffold1054 WUBlastX DNA_IS4EU 279694 279903 43 - . . scaffold1054 TRF Tandem_Repeat 282913 282946 59 + . . scaffold1054 GLEAN promoter 283442 284441 0.999237 - . ID=CGI_10012964; scaffold1054 GLEAN promoter 289170 290169 0.992063 + . ID=CGI_10012965; scaffold1054 GLEAN mRNA 290170 298074 0.992063 + . ID=CGI_10012965; scaffold1054 GLEAN promoter 303127 304126 0.999537 + . ID=CGI_10012966; scaffold1054 GLEAN mRNA 304127 304804 0.999537 + . ID=CGI_10012966; scaffold1054 TRF Tandem_Repeat 309520 309596 154 + . . scaffold1054 WUBlastX LTR_Gypsy 310723 311478 204 + . . scaffold1054 WUBlastX LTR_Gypsy 310723 311637 121 + . . scaffold1054 GLEAN promoter 311606 312605 0.968602 + . ID=CGI_10012967; scaffold1054 GLEAN mRNA 312606 322566 0.968602 + . ID=CGI_10012967; scaffold1054 WUBlastX LINE_L2 312831 313205 77 + . . scaffold1054 WUBlastX LINE_L2 312891 313205 85 + . . scaffold1054 WUBlastX LINE_L2 312999 313223 100 + . . scaffold1054 WUBlastX LINE_L2 313193 313351 63 + . . scaffold1054 WUBlastX LINE_L2 313351 315762 1402 + . . scaffold1054 WUBlastX LINE_L2 315745 315957 125 + . . scaffold1054 TRF Tandem_Repeat 319201 319243 77 + . . scaffold1054 GLEAN promoter 326717 327716 0.999642 + . ID=CGI_10012968; scaffold1054 GLEAN mRNA 327717 329501 0.999642 + . ID=CGI_10012968; scaffold1054 WUBlastX DNA_Kolobok 329738 330178 24 + . . scaffold1054 WUBlastX DNA_hAT-Tip100 329759 330121 104 + . . scaffold1054 GLEAN promoter 330138 331137 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 331129 331824 209 + . . scaffold1054 GLEAN mRNA 331138 333504 0.999415 + . ID=CGI_10012969; scaffold1054 WUBlastX DNA_Kolobok 331938 332156 116 + . . scaffold1054 WUBlastX DNA_Kolobok 332074 332523 62 + . . scaffold1054 WUBlastX DNA_Kolobok 332260 332496 79 + . . scaffold1054 WUBlastX DNA_Kolobok 332284 332553 62 + . . scaffold1054 WUBlastX DNA_Kolobok 332850 333041 66 + . . scaffold1054 WUBlastX DNA_Kolobok 332859 333011 88 + . . scaffold1054 WUBlastX DNA_Kolobok 333036 333284 93 + . . scaffold1054 WUBlastX DNA_Kolobok 333557 333709 77 - . . scaffold1054 WUBlastX DNA_Kolobok 334127 334291 33 - . . scaffold1054 GLEAN mRNA 334844 335086 0.618186 - . ID=CGI_10012970; scaffold1054 GLEAN promoter 335087 336086 0.618186 - . ID=CGI_10012970; scaffold1054 TRF Tandem_Repeat 342535 342591 105 + . . scaffold1056 TRF Tandem_Repeat 12289 12376 92 + . . scaffold1056 WUBlastX DNA_hAT-Tip100 21703 21933 44 + . . scaffold1056 TRF Tandem_Repeat 25045 25077 59 + . . scaffold1056 GLEAN mRNA 30111 37944 0.999457 - . ID=CGI_10010175; scaffold1056 TRF Tandem_Repeat 36627 36672 92 + . . scaffold1056 GLEAN promoter 37945 38944 0.999457 - . ID=CGI_10010175; scaffold1056 TRF Tandem_Repeat 41040 41104 130 + . . scaffold1056 GLEAN promoter 44732 45731 0.614409 + . ID=CGI_10010176; scaffold1056 GLEAN mRNA 45732 52165 0.614409 + . ID=CGI_10010176; scaffold1056 TRF Tandem_Repeat 57924 58040 130 + . . scaffold1056 GLEAN promoter 59616 60615 1 + . ID=CGI_10010177; scaffold1056 GLEAN mRNA 60616 66669 1 + . ID=CGI_10010177; scaffold1056 GLEAN promoter 68360 69359 0.976625 + . ID=CGI_10010178; scaffold1056 GLEAN mRNA 69360 82264 0.976625 + . ID=CGI_10010178; scaffold1056 GLEAN mRNA 88692 89738 0.995657 - . ID=CGI_10010179; scaffold1056 GLEAN promoter 89739 90738 0.995657 - . ID=CGI_10010179; scaffold1056 TRF Tandem_Repeat 91105 91151 94 + . . scaffold1056 TRF Tandem_Repeat 91594 91660 116 + . . scaffold1056 GLEAN promoter 97901 98900 0.999922 + . ID=CGI_10010180; scaffold1056 GLEAN mRNA 98901 106063 0.999922 + . ID=CGI_10010180; scaffold1056 TRF Tandem_Repeat 101554 101609 112 + . . scaffold1056 TRF Tandem_Repeat 106591 106624 61 + . . scaffold1056 TRF Tandem_Repeat 109344 109391 87 + . . scaffold1056 TRF Tandem_Repeat 109619 109902 471 + . . scaffold1056 TRF Tandem_Repeat 110177 110263 160 + . . scaffold1056 WUBlastX LINE_RTE-X 111090 111263 60 - . . scaffold1056 TRF Tandem_Repeat 116535 116824 386 + . . scaffold1056 TRF Tandem_Repeat 126018 126043 52 + . . scaffold1056 TRF Tandem_Repeat 127506 127790 455 + . . scaffold1056 TRF Tandem_Repeat 133024 133082 118 + . . scaffold1056 TRF Tandem_Repeat 137635 138607 1381 + . . scaffold1056 WUBlastX LTR_DIRS 143317 143361 30 + . . scaffold1056 WUBlastX LTR_DIRS 143322 143576 25 + . . scaffold1056 WUBlastX LTR_DIRS 143629 144165 88 + . . scaffold1056 WUBlastX LTR_DIRS 144016 144192 75 + . . scaffold1056 WUBlastX LTR_DIRS 144234 144365 27 + . . scaffold1056 WUBlastX LTR_DIRS 144321 144878 112 + . . scaffold1056 WUBlastX LTR_DIRS 147475 147756 107 + . . scaffold1056 WUBlastX LTR_DIRS 147781 148338 109 + . . scaffold1056 TRF Tandem_Repeat 156122 156152 62 + . . scaffold1056 TRF Tandem_Repeat 171487 172035 920 + . . scaffold1056 GLEAN promoter 177755 178754 0.733467 + . ID=CGI_10010181; scaffold1056 GLEAN mRNA 178755 178946 0.733467 + . ID=CGI_10010181; scaffold1056 TRF Tandem_Repeat 198099 199599 1943 + . . scaffold1056 TRF Tandem_Repeat 200949 200973 50 + . . scaffold1056 GLEAN mRNA 237863 243918 0.999676 - . ID=CGI_10010182; scaffold1056 GLEAN promoter 243919 244918 0.999676 - . ID=CGI_10010182; scaffold1056 TRF Tandem_Repeat 245753 245783 53 + . . scaffold1056 WUBlastX LINE_L1-Tx1 248868 249242 109 + . . scaffold1056 WUBlastX LINE_L1-Tx1 249696 249854 27 + . . scaffold1057 WUBlastX LINE_L1-Tx1 2 277 112 + . . scaffold1057 WUBlastX LINE_L1-Tx1 2 1231 96 + . . scaffold1057 WUBlastX LINE_L1-Tx1 2 631 108 + . . scaffold1058 GLEAN promoter 1 777 0.639824 + . ID=CGI_10004874; scaffold1058 GLEAN mRNA 778 8812 0.639824 + . ID=CGI_10004874; scaffold1058 TRF Tandem_Repeat 7317 7352 54 + . . scaffold1058 GLEAN mRNA 10764 12980 0.538394 - . ID=CGI_10004875; scaffold1058 WUBlastX LTR_Gypsy 12363 12662 24 - . . scaffold1058 GLEAN promoter 12981 13980 0.538394 - . ID=CGI_10004875; scaffold1058 WUBlastX LINE_RTE-X 13782 14171 92 - . . scaffold1058 WUBlastX LINE_RTE-X 14281 14496 75 - . . scaffold1058 WUBlastX LINE_RTE-X 14302 14664 27 - . . scaffold1058 GLEAN promoter 15116 16115 0.541818 + . ID=CGI_10004876; scaffold1058 GLEAN mRNA 16116 16920 0.541818 + . ID=CGI_10004876; scaffold1058 WUBlastX LTR_Gypsy? 35946 37097 22 - . . scaffold1058 WUBlastX LTR_Gypsy 38489 40123 515 - . . scaffold1058 WUBlastX LTR_Gypsy-Cigr 38810 41770 1252 - . . scaffold1058 WUBlastX LTR_Gypsy 40352 42148 1070 - . . scaffold1058 WUBlastX LTR_Gypsy 42247 42663 48 - . . scaffold1058 WUBlastX LTR_Gypsy 42247 42597 57 - . . scaffold1058 WUBlastX LTR_Gypsy 42256 42516 68 - . . scaffold1058 WUBlastX LTR_Gypsy 42262 42738 44 - . . scaffold1058 WUBlastX LTR_Gypsy 42994 43260 21 - . . scaffold1058 WUBlastX LTR_Gypsy 43168 43521 62 - . . scaffold1058 TRF Tandem_Repeat 43880 43922 77 + . . scaffold1058 TRF Tandem_Repeat 43929 44638 930 + . . scaffold1058 GLEAN promoter 46039 47038 0.550145 + . ID=CGI_10004877; scaffold1058 GLEAN mRNA 47039 48226 0.550145 + . ID=CGI_10004877; scaffold1058 WUBlastX DNA_Harbinger 50036 50641 303 + . . scaffold1058 TRF Tandem_Repeat 54646 54682 74 + . . scaffold1058 GLEAN mRNA 81813 92966 0.499919 - . ID=CGI_10004879; scaffold1058 WUBlastX DNA_Harbinger 82221 82583 163 + . . scaffold1058 TRF Tandem_Repeat 89834 89997 143 + . . scaffold1058 GLEAN promoter 92967 93966 0.499919 - . ID=CGI_10004879; scaffold106 TRF Tandem_Repeat 2 911 1175 + . . scaffold106 TRF Tandem_Repeat 7956 8003 78 + . . scaffold106 WUBlastX LINE_Penelope 9181 9351 66 + . . scaffold106 WUBlastX DNA_Sola 10970 11101 37 + . . scaffold106 WUBlastX DNA_Sola 11065 11325 42 + . . scaffold106 WUBlastX DNA_Sola 11155 11532 74 + . . scaffold106 WUBlastX DNA_Sola 11433 11654 121 + . . scaffold106 WUBlastX DNA_Sola 11433 11759 110 + . . scaffold106 WUBlastX DNA_Sola 13466 13603 49 + . . scaffold106 WUBlastX DNA_Sola 13564 14160 55 + . . scaffold106 WUBlastX DNA_Sola 13657 14271 200 + . . scaffold106 TRF Tandem_Repeat 31791 31853 108 + . . scaffold106 GLEAN promoter 36797 37796 0.403411 + . ID=CGI_10022023; scaffold106 GLEAN mRNA 37797 38399 0.403411 + . ID=CGI_10022023; scaffold106 TRF Tandem_Repeat 41478 41513 72 + . . scaffold106 TRF Tandem_Repeat 56463 56523 122 + . . scaffold106 TRF Tandem_Repeat 67234 67429 351 + . . scaffold106 TRF Tandem_Repeat 67812 67961 210 + . . scaffold106 TRF Tandem_Repeat 67813 68047 311 + . . scaffold106 TRF Tandem_Repeat 67813 68047 311 + . . scaffold106 GLEAN mRNA 88457 89815 0.654722 - . ID=CGI_10022024; scaffold106 GLEAN promoter 89816 90815 0.654722 - . ID=CGI_10022024; scaffold106 GLEAN promoter 91200 92199 1 + . ID=CGI_10022025; scaffold106 GLEAN mRNA 92200 94776 1 + . ID=CGI_10022025; scaffold106 TRF Tandem_Repeat 93102 93321 240 + . . scaffold106 TRF Tandem_Repeat 93111 93336 207 + . . scaffold106 TRF Tandem_Repeat 97602 98545 1015 + . . scaffold106 TRF Tandem_Repeat 97602 98517 855 + . . scaffold106 TRF Tandem_Repeat 97608 98490 927 + . . scaffold106 TRF Tandem_Repeat 102111 102416 372 + . . scaffold106 TRF Tandem_Repeat 104698 104819 109 + . . scaffold106 TRF Tandem_Repeat 104721 104969 251 + . . scaffold106 TRF Tandem_Repeat 105767 105806 80 + . . scaffold106 TRF Tandem_Repeat 124505 124552 96 + . . scaffold106 TRF Tandem_Repeat 127221 127336 153 + . . scaffold106 TRF Tandem_Repeat 141523 141561 51 + . . scaffold106 GLEAN mRNA 147101 157153 0.936462 - . ID=CGI_10022026; scaffold106 GLEAN promoter 157154 158153 0.936462 - . ID=CGI_10022026; scaffold106 TRF Tandem_Repeat 169980 170056 145 + . . scaffold106 GLEAN promoter 170245 171244 1 + . ID=CGI_10022027; scaffold106 GLEAN mRNA 171245 174202 1 + . ID=CGI_10022027; scaffold106 GLEAN mRNA 178826 194412 0.985412 - . ID=CGI_10022028; scaffold106 TRF Tandem_Repeat 183607 184868 2337 + . . scaffold106 TRF Tandem_Repeat 190648 190674 54 + . . scaffold106 GLEAN promoter 194413 195412 0.985412 - . ID=CGI_10022028; scaffold106 GLEAN promoter 194424 195423 0.481487 + . ID=CGI_10022029; scaffold106 GLEAN mRNA 195424 197112 0.481487 + . ID=CGI_10022029; scaffold106 TRF Tandem_Repeat 200022 200053 64 + . . scaffold106 GLEAN mRNA 201531 206371 0.865101 - . ID=CGI_10022030; scaffold106 GLEAN promoter 206372 207371 0.865101 - . ID=CGI_10022030; scaffold106 GLEAN promoter 224926 225925 0.999167 + . ID=CGI_10022031; scaffold106 TRF Tandem_Repeat 225301 225347 58 + . . scaffold106 GLEAN mRNA 225926 241721 0.999167 + . ID=CGI_10022031; scaffold106 WUBlastX LTR_ERVK 226478 226711 28 + . . scaffold106 TRF Tandem_Repeat 231138 231172 70 + . . scaffold106 TRF Tandem_Repeat 233049 233096 96 + . . scaffold106 TRF Tandem_Repeat 235359 235411 54 + . . scaffold106 GLEAN mRNA 238866 259059 0.999415 - . ID=CGI_10022032; scaffold106 GLEAN promoter 258356 259355 1 + . ID=CGI_10022033; scaffold106 GLEAN promoter 259060 260059 0.999415 - . ID=CGI_10022032; scaffold106 GLEAN mRNA 259356 263685 1 + . ID=CGI_10022033; scaffold106 GLEAN promoter 267648 268647 1 + . ID=CGI_10022034; scaffold106 GLEAN mRNA 268648 274086 1 + . ID=CGI_10022034; scaffold106 GLEAN mRNA 276163 284880 1 - . ID=CGI_10022035; scaffold106 TRF Tandem_Repeat 278824 279560 990 + . . scaffold106 GLEAN promoter 284881 285880 1 - . ID=CGI_10022035; scaffold106 GLEAN promoter 287886 288885 1 + . ID=CGI_10022036; scaffold106 GLEAN mRNA 288886 289125 1 + . ID=CGI_10022036; scaffold106 GLEAN mRNA 295834 307146 0.998359 - . ID=CGI_10022037; scaffold106 TRF Tandem_Repeat 302093 302180 140 + . . scaffold106 GLEAN promoter 307147 308146 0.998359 - . ID=CGI_10022037; scaffold106 GLEAN mRNA 307427 309883 0.61441 - . ID=CGI_10022038; scaffold106 GLEAN promoter 309884 310883 0.61441 - . ID=CGI_10022038; scaffold106 GLEAN mRNA 313721 333359 0.702157 - . ID=CGI_10022039; scaffold106 TRF Tandem_Repeat 316010 316064 83 + . . scaffold106 TRF Tandem_Repeat 328666 328883 252 + . . scaffold106 TRF Tandem_Repeat 329359 329732 266 + . . scaffold106 TRF Tandem_Repeat 329359 329731 344 + . . scaffold106 GLEAN promoter 333360 334359 0.702157 - . ID=CGI_10022039; scaffold106 GLEAN mRNA 336636 343808 1 - . ID=CGI_10022040; scaffold106 TRF Tandem_Repeat 339365 339415 102 + . . scaffold106 GLEAN promoter 343809 344808 1 - . ID=CGI_10022040; scaffold106 WUBlastX LINE_L2 344002 344766 153 + . . scaffold106 WUBlastX LINE_CR1 344221 344754 423 + . . scaffold106 WUBlastX LINE_CR1 344751 345122 235 + . . scaffold106 WUBlastX LINE_CR1 345086 345349 33 + . . scaffold106 WUBlastX LINE_CR1 345200 345361 68 + . . scaffold106 GLEAN mRNA 345736 352778 0.99879 - . ID=CGI_10022041; scaffold106 GLEAN promoter 352779 353778 0.99879 - . ID=CGI_10022041; scaffold106 TRF Tandem_Repeat 360511 360541 62 + . . scaffold106 GLEAN promoter 361179 362178 0.400764 + . ID=CGI_10022042; scaffold106 GLEAN mRNA 362179 402899 0.400764 + . ID=CGI_10022042; scaffold106 TRF Tandem_Repeat 362692 362749 77 + . . scaffold106 GLEAN mRNA 404099 409019 0.999999 - . ID=CGI_10022043; scaffold106 TRF Tandem_Repeat 404286 404470 298 + . . scaffold106 GLEAN promoter 409020 410019 0.999999 - . ID=CGI_10022043; scaffold106 GLEAN promoter 409392 410391 0.998274 + . ID=CGI_10022044; scaffold106 GLEAN mRNA 410392 413593 0.998274 + . ID=CGI_10022044; scaffold106 GLEAN mRNA 416299 427846 1 - . ID=CGI_10022045; scaffold106 TRF Tandem_Repeat 426046 426091 92 + . . scaffold106 GLEAN promoter 427847 428846 1 - . ID=CGI_10022045; scaffold106 WUBlastX LINE_CR1-L2 428849 429319 56 + . . scaffold106 WUBlastX LINE_L2 428951 429319 138 + . . scaffold106 TRF Tandem_Repeat 432541 433744 1632 + . . scaffold106 TRF Tandem_Repeat 433906 433971 71 + . . scaffold106 TRF Tandem_Repeat 435855 436513 920 + . . scaffold106 WUBlastX LINE_RTE-X 440086 440400 30 - . . scaffold106 WUBlastX LINE_RTE-X 440107 440268 47 - . . scaffold106 TRF Tandem_Repeat 457874 457957 168 + . . scaffold106 WUBlastX LINE_RTE-X 458416 460350 971 - . . scaffold106 WUBlastX LINE_L2 459172 460716 174 - . . scaffold106 TRF Tandem_Repeat 462638 462681 61 + . . scaffold106 TRF Tandem_Repeat 462712 463503 1062 + . . scaffold106 TRF Tandem_Repeat 464666 465460 978 + . . scaffold106 TRF Tandem_Repeat 486765 487563 954 + . . scaffold106 TRF Tandem_Repeat 490336 490394 65 + . . scaffold106 TRF Tandem_Repeat 490343 490402 65 + . . scaffold106 TRF Tandem_Repeat 490602 490673 81 + . . scaffold106 TRF Tandem_Repeat 491272 491329 107 + . . scaffold106 TRF Tandem_Repeat 491666 491718 106 + . . scaffold106 GLEAN mRNA 493945 498686 0.99952 - . ID=CGI_10022046; scaffold106 GLEAN promoter 498687 499686 0.99952 - . ID=CGI_10022046; scaffold106 GLEAN mRNA 498736 512466 0.728135 - . ID=CGI_10022047; scaffold106 TRF Tandem_Repeat 502281 502411 136 + . . scaffold106 GLEAN promoter 512467 513466 0.728135 - . ID=CGI_10022047; scaffold106 WUBlastX LINE_RTE-X 529197 530222 208 - . . scaffold106 WUBlastX LINE_Proto2 529683 531149 222 - . . scaffold106 WUBlastX LINE_L1 530598 531263 32 - . . scaffold106 WUBlastX LINE_Proto2 531626 531925 87 - . . scaffold106 GLEAN promoter 533634 534633 0.182711 + . ID=CGI_10022048; scaffold106 GLEAN mRNA 534634 537073 0.182711 + . ID=CGI_10022048; scaffold106 TRF Tandem_Repeat 539963 540012 75 + . . scaffold106 TRF Tandem_Repeat 540393 540436 88 + . . scaffold106 TRF Tandem_Repeat 541884 541948 112 + . . scaffold106 TRF Tandem_Repeat 547611 547642 55 + . . scaffold106 WUBlastX LINE_RTE-X 550731 551924 216 + . . scaffold106 WUBlastX LINE_RTE-X 551253 551924 234 + . . scaffold106 WUBlastX LINE_Jockey 551853 551945 25 + . . scaffold106 WUBlastX LINE_RTE-X 551942 553099 512 + . . scaffold106 WUBlastX LINE_RTE-X 553088 553486 61 + . . scaffold106 WUBlastX LINE_RTE-X 553097 553339 81 + . . scaffold106 WUBlastX LINE_I-Nimb 553726 553836 29 + . . scaffold106 WUBlastX LINE_L1-Tx1 554710 555099 55 + . . scaffold106 WUBlastX LINE_RTE-X 554785 555822 468 + . . scaffold106 WUBlastX LINE_RTE-X 555803 556117 65 + . . scaffold106 WUBlastX LINE_RTE-X 555815 556027 79 + . . scaffold106 WUBlastX LINE_I-Nimb 556412 556522 21 + . . scaffold106 TRF Tandem_Repeat 560900 560933 59 + . . scaffold106 TRF Tandem_Repeat 571061 571102 56 + . . scaffold106 TRF Tandem_Repeat 587467 587543 154 + . . scaffold106 GLEAN promoter 591897 592896 0.863731 + . ID=CGI_10022049; scaffold106 GLEAN mRNA 592897 614534 0.863731 + . ID=CGI_10022049; scaffold106 TRF Tandem_Repeat 607797 607909 190 + . . scaffold106 GLEAN mRNA 618464 635690 0.734569 - . ID=CGI_10022050; scaffold106 TRF Tandem_Repeat 627347 627378 55 + . . scaffold106 GLEAN promoter 629281 630280 1 + . ID=CGI_10022051; scaffold106 GLEAN mRNA 630281 630795 1 + . ID=CGI_10022051; scaffold106 GLEAN promoter 635691 636690 0.734569 - . ID=CGI_10022050; scaffold106 TRF Tandem_Repeat 636373 637257 1260 + . . scaffold106 GLEAN mRNA 650785 658770 0.999129 - . ID=CGI_10022052; scaffold106 WUBlastX LTR_Gypsy 653521 653661 28 - . . scaffold106 TRF Tandem_Repeat 653681 653748 100 + . . scaffold106 WUBlastX LTR_Gypsy 654740 654982 26 - . . scaffold106 WUBlastX LTR_Gypsy 654779 654970 28 - . . scaffold106 GLEAN promoter 658771 659770 0.999129 - . ID=CGI_10022052; scaffold106 GLEAN promoter 664500 665499 0.6182 + . ID=CGI_10022053; scaffold106 GLEAN mRNA 665500 665928 0.6182 + . ID=CGI_10022053; scaffold106 GLEAN promoter 666276 667275 0.999594 + . ID=CGI_10022054; scaffold106 GLEAN mRNA 667276 667650 0.999594 + . ID=CGI_10022054; scaffold106 TRF Tandem_Repeat 668106 668153 96 + . . scaffold106 GLEAN mRNA 679041 679838 0.997321 - . ID=CGI_10022055; scaffold106 GLEAN promoter 679839 680838 0.997321 - . ID=CGI_10022055; scaffold106 GLEAN promoter 686960 687959 1 + . ID=CGI_10022056; scaffold106 GLEAN mRNA 687960 690536 1 + . ID=CGI_10022056; scaffold106 TRF Tandem_Repeat 689033 689173 117 + . . scaffold106 WUBlastX LTR_Gypsy-Cigr 696744 697907 772 - . . scaffold106 WUBlastX LTR_Gypsy 697838 698011 49 - . . scaffold106 WUBlastX LTR_Gypsy 697943 698053 41 - . . scaffold106 WUBlastX LTR_Gypsy 698038 698628 214 - . . scaffold106 WUBlastX LTR_Gypsy-Cigr 698134 699606 1244 - . . scaffold106 WUBlastX LTR_Gypsy 699286 699771 46 - . . scaffold106 WUBlastX LTR_Gypsy 699761 700039 22 - . . scaffold106 WUBlastX LTR_Gypsy 699818 700087 66 - . . scaffold106 WUBlastX LTR_Gypsy 700153 700308 20 - . . scaffold106 WUBlastX LTR_Gypsy 704456 704572 66 + . . scaffold106 WUBlastX LTR_Gypsy 704777 705217 27 + . . scaffold106 WUBlastX LTR_Gypsy 705044 705184 47 + . . scaffold106 WUBlastX LINE_L2 706222 706566 33 + . . scaffold106 WUBlastX LINE_L2 706342 706566 110 + . . scaffold106 WUBlastX LINE_L2 706531 707211 92 + . . scaffold106 WUBlastX LINE_L2 706648 707142 192 + . . scaffold106 WUBlastX LINE_L2 707408 707992 52 + . . scaffold106 WUBlastX LINE_L2 707714 708220 57 + . . scaffold106 WUBlastX LINE_L2 707753 708112 72 + . . scaffold106 WUBlastX LINE_L2 707771 708067 112 + . . scaffold1061 GLEAN promoter 152 1151 1 + . ID=CGI_10017239; scaffold1061 GLEAN mRNA 1152 5383 1 + . ID=CGI_10017239; scaffold1061 TRF Tandem_Repeat 23597 23653 114 + . . scaffold1061 TRF Tandem_Repeat 43839 43879 82 + . . scaffold1061 TRF Tandem_Repeat 61825 61857 66 + . . scaffold1061 WUBlastX LTR_Gypsy 65276 68374 1986 - . . scaffold1061 WUBlastX LTR_Gypsy 65279 69160 1643 - . . scaffold1061 GLEAN mRNA 70194 71618 0.908156 - . ID=CGI_10017240; scaffold1061 GLEAN promoter 71619 72618 0.908156 - . ID=CGI_10017240; scaffold1061 GLEAN mRNA 71667 73216 0.999996 - . ID=CGI_10017241; scaffold1061 WUBlastX DNA_Kolobok-Hyd 72148 72186 24 - . . scaffold1061 GLEAN promoter 73217 74216 0.999996 - . ID=CGI_10017241; scaffold1061 WUBlastX LTR_Pao 79146 80138 651 - . . scaffold1061 WUBlastX LTR_Pao 79401 80093 700 - . . scaffold1061 WUBlastX LTR_Pao 80066 82261 479 - . . scaffold1061 WUBlastX LTR_Pao 80615 82303 1265 - . . scaffold1061 WUBlastX LTR_Pao 82318 82680 258 - . . scaffold1061 TRF Tandem_Repeat 82711 82844 110 + . . scaffold1061 TRF Tandem_Repeat 83852 83968 118 + . . scaffold1061 WUBlastX LTR_Pao 84001 85218 764 - . . scaffold1061 WUBlastX LTR_Pao 85188 85313 70 - . . scaffold1061 WUBlastX LTR_Pao 85191 85436 57 - . . scaffold1061 TRF Tandem_Repeat 85473 85804 308 + . . scaffold1061 TRF Tandem_Repeat 85492 85804 348 + . . scaffold1061 WUBlastX LTR_Pao 85868 86443 177 - . . scaffold1061 TRF Tandem_Repeat 88735 88941 181 + . . scaffold1061 TRF Tandem_Repeat 88755 88813 57 + . . scaffold1061 TRF Tandem_Repeat 88755 88983 209 + . . scaffold1061 TRF Tandem_Repeat 88785 88983 80 + . . scaffold1061 WUBlastX LTR_Pao 101051 101275 33 + . . scaffold1061 WUBlastX LTR_Pao 101288 101620 47 + . . scaffold1061 WUBlastX LTR_Pao 101420 101620 92 + . . scaffold1061 WUBlastX LTR_Pao 101592 101924 196 + . . scaffold1061 WUBlastX LTR_Pao 102874 102981 22 + . . scaffold1061 WUBlastX LTR_Pao 103177 103497 29 + . . scaffold1061 WUBlastX LTR_Pao 103267 103950 293 + . . scaffold1061 WUBlastX LTR_Pao 103944 105284 347 + . . scaffold1061 WUBlastX LTR_Pao 104196 105284 549 + . . scaffold1061 WUBlastX LTR_Pao 104814 106055 282 + . . scaffold1061 WUBlastX LTR_Pao 105777 106226 143 + . . scaffold1061 WUBlastX LTR_Pao 106153 106500 238 + . . scaffold1061 WUBlastX LTR_Pao 106496 106915 373 + . . scaffold1061 WUBlastX LTR_Pao 106917 107429 315 + . . scaffold1061 WUBlastX LINE_L2-Hydra 109548 109907 82 + . . scaffold1061 WUBlastX LINE_Proto2 109939 110322 32 + . . scaffold1061 WUBlastX LINE_L2 109951 110214 48 + . . scaffold1061 WUBlastX LINE_Proto2 109951 110397 31 + . . scaffold1061 WUBlastX LINE_RTE-X 110475 112088 39 + . . scaffold1061 WUBlastX LINE_L2 110967 111308 47 + . . scaffold1061 WUBlastX LINE_RTE-X 111027 112088 100 + . . scaffold1061 WUBlastX LINE_RTE-X 112149 112229 29 + . . scaffold1061 WUBlastX LINE_Jockey 112256 112468 76 + . . scaffold1061 WUBlastX LINE_RTE-X 112449 112991 70 + . . scaffold1061 WUBlastX DNA_Harbinger 113457 113858 154 + . . scaffold1061 WUBlastX DNA_Harbinger 115359 115502 81 + . . scaffold1061 WUBlastX DNA_Harbinger 115383 115502 139 + . . scaffold1061 WUBlastX DNA_Harbinger 115657 115782 75 + . . scaffold1061 WUBlastX DNA_Harbinger 115888 116205 135 + . . scaffold1061 WUBlastX DNA_Harbinger 115948 116199 188 + . . scaffold1061 TRF Tandem_Repeat 116471 116551 153 + . . scaffold1061 GLEAN promoter 119572 120571 0.995237 + . ID=CGI_10017243; scaffold1061 GLEAN mRNA 120572 121018 0.995237 + . ID=CGI_10017243; scaffold1061 WUBlastX LTR_Gypsy 121318 121902 33 + . . scaffold1061 WUBlastX DNA_Maverick 121411 122514 624 + . . scaffold1061 WUBlastX LTR_Gypsy 122368 122547 53 + . . scaffold1061 WUBlastX DNA_Maverick 122578 122697 34 + . . scaffold1061 WUBlastX DNA_Maverick 122656 122967 67 + . . scaffold1061 WUBlastX DNA_Maverick 123464 124771 673 + . . scaffold1061 WUBlastX DNA_Maverick 124787 125203 184 + . . scaffold1061 WUBlastX DNA_Maverick 125857 126492 305 + . . scaffold1061 WUBlastX DNA_Maverick 127250 129076 1156 - . . scaffold1061 WUBlastX DNA_Maverick 129227 130750 349 - . . scaffold1061 WUBlastX DNA_Maverick 130379 131746 69 - . . scaffold1061 WUBlastX DNA_Maverick 130913 131452 126 - . . scaffold1061 TRF Tandem_Repeat 135493 135535 86 + . . scaffold1061 GLEAN mRNA 136671 143310 0.381376 - . ID=CGI_10017245; scaffold1061 TRF Tandem_Repeat 139064 139119 112 + . . scaffold1061 TRF Tandem_Repeat 141887 141963 147 + . . scaffold1061 GLEAN promoter 143311 144310 0.381376 - . ID=CGI_10017245; scaffold1061 WUBlastX LINE_Penelope 148808 149569 94 + . . scaffold1061 TRF Tandem_Repeat 152282 152313 55 + . . scaffold1061 WUBlastX DNA_PiggyBac 152666 153697 239 - . . scaffold1061 WUBlastX DNA_PiggyBac 152681 153541 363 - . . scaffold1061 WUBlastX DNA_PiggyBac 155027 155320 95 - . . scaffold1061 WUBlastX DNA_PiggyBac 155042 155290 122 - . . scaffold1061 WUBlastX DNA_PiggyBac 155906 156052 25 - . . scaffold1061 WUBlastX DNA_PiggyBac 156223 156354 23 - . . scaffold1061 GLEAN mRNA 172273 178786 0.842654 - . ID=CGI_10017246; scaffold1061 GLEAN promoter 178787 179786 0.842654 - . ID=CGI_10017246; scaffold1061 GLEAN mRNA 190524 203377 0.999998 - . ID=CGI_10017247; scaffold1061 TRF Tandem_Repeat 196736 196980 113 + . . scaffold1061 TRF Tandem_Repeat 197035 197442 400 + . . scaffold1061 TRF Tandem_Repeat 198358 198406 98 + . . scaffold1061 TRF Tandem_Repeat 199785 199818 68 + . . scaffold1061 GLEAN promoter 203378 204377 0.999998 - . ID=CGI_10017247; scaffold1061 WUBlastX LINE_RTE-X 206842 207057 37 + . . scaffold1061 WUBlastX LINE_RTE-X 206920 207057 62 + . . scaffold1061 WUBlastX LINE_RTE-X 206920 207144 25 + . . scaffold1061 TRF Tandem_Repeat 210836 210860 50 + . . scaffold1061 TRF Tandem_Repeat 212050 212088 78 + . . scaffold1061 TRF Tandem_Repeat 213259 213298 71 + . . scaffold1061 TRF Tandem_Repeat 220877 220905 58 + . . scaffold1061 GLEAN mRNA 222330 230527 0.999351 - . ID=CGI_10017248; scaffold1061 WUBlastX LTR_Gypsy 226598 226732 22 - . . scaffold1061 GLEAN promoter 230315 231314 1 + . ID=CGI_10017249; scaffold1061 GLEAN promoter 230528 231527 0.999351 - . ID=CGI_10017248; scaffold1061 GLEAN mRNA 231315 233206 1 + . ID=CGI_10017249; scaffold1061 GLEAN mRNA 233777 241296 1 - . ID=CGI_10017250; scaffold1061 TRF Tandem_Repeat 237611 237678 57 + . . scaffold1061 GLEAN promoter 241297 242296 1 - . ID=CGI_10017250; scaffold1061 TRF Tandem_Repeat 242341 242385 90 + . . scaffold1061 GLEAN promoter 243234 244233 0.85922 + . ID=CGI_10017251; scaffold1061 TRF Tandem_Repeat 243465 243523 118 + . . scaffold1061 GLEAN mRNA 244234 289069 0.85922 + . ID=CGI_10017251; scaffold1061 TRF Tandem_Repeat 245156 245219 128 + . . scaffold1061 GLEAN mRNA 252587 259902 0.757948 - . ID=CGI_10017252; scaffold1061 WUBlastX LTR_Caulimoviru 252992 253768 34 - . . scaffold1061 GLEAN promoter 259903 260902 0.757948 - . ID=CGI_10017252; scaffold1061 TRF Tandem_Repeat 267757 267809 79 + . . scaffold1061 TRF Tandem_Repeat 273666 274782 1483 + . . scaffold1061 TRF Tandem_Repeat 292700 292941 306 + . . scaffold1061 TRF Tandem_Repeat 294100 294143 52 + . . scaffold1061 TRF Tandem_Repeat 298230 298256 54 + . . scaffold1061 WUBlastX LINE_R2-Hero 309638 309871 77 + . . scaffold1061 WUBlastX LINE_R2-Hero 309980 310453 60 + . . scaffold1061 WUBlastX LINE_R2-Hero 309980 310156 82 + . . scaffold1061 WUBlastX LINE_R2-Hero 310278 310430 62 + . . scaffold1061 WUBlastX LINE_R2-Hero 310323 310430 66 + . . scaffold1061 WUBlastX LINE_R2-Hero 310438 310707 83 + . . scaffold1061 WUBlastX LINE_R2-Hero 310486 310707 87 + . . scaffold1061 WUBlastX LINE_R2-Hero 310558 310791 89 + . . scaffold1061 GLEAN mRNA 311239 348465 0.999676 - . ID=CGI_10017253; scaffold1061 TRF Tandem_Repeat 313530 313575 92 + . . scaffold1061 TRF Tandem_Repeat 313608 313663 60 + . . scaffold1061 TRF Tandem_Repeat 313608 313665 54 + . . scaffold1061 TRF Tandem_Repeat 330194 330237 88 + . . scaffold1061 TRF Tandem_Repeat 333824 333877 74 + . . scaffold1061 TRF Tandem_Repeat 334013 334048 72 + . . scaffold1061 TRF Tandem_Repeat 337542 337591 100 + . . scaffold1061 TRF Tandem_Repeat 338329 338363 70 + . . scaffold1061 GLEAN promoter 347857 348856 0.999183 + . ID=CGI_10017254; scaffold1061 GLEAN promoter 348466 349465 0.999676 - . ID=CGI_10017253; scaffold1061 GLEAN mRNA 348857 370326 0.999183 + . ID=CGI_10017254; scaffold1061 TRF Tandem_Repeat 352586 352646 122 + . . scaffold1061 TRF Tandem_Repeat 364200 364245 92 + . . scaffold1061 WUBlastX LINE_CR1 379329 379451 21 + . . scaffold1061 WUBlastX LINE_CR1-L2 379824 380402 64 + . . scaffold1061 WUBlastX LINE_L2 379863 380348 93 + . . scaffold1061 WUBlastX LINE_L2 380578 380874 54 + . . scaffold1061 TRF Tandem_Repeat 382999 383040 84 + . . scaffold1061 TRF Tandem_Repeat 389886 390010 92 + . . scaffold1061 GLEAN mRNA 391736 399042 0.990978 - . ID=CGI_10017255; scaffold1061 TRF Tandem_Repeat 391859 391896 51 + . . scaffold1061 GLEAN promoter 399043 400042 0.990978 - . ID=CGI_10017255; scaffold1061 TRF Tandem_Repeat 401815 401946 119 + . . scaffold1061 TRF Tandem_Repeat 403037 403100 128 + . . scaffold1061 GLEAN promoter 405526 406525 0.999415 + . ID=CGI_10017256; scaffold1061 GLEAN mRNA 406526 417022 0.999415 + . ID=CGI_10017256; scaffold1061 TRF Tandem_Repeat 418154 418191 51 + . . scaffold1061 TRF Tandem_Repeat 418389 419102 1021 + . . scaffold1061 TRF Tandem_Repeat 436579 436741 150 + . . scaffold1061 TRF Tandem_Repeat 436579 436694 54 + . . scaffold1061 TRF Tandem_Repeat 436579 436681 66 + . . scaffold1061 GLEAN promoter 446997 447996 0.999676 + . ID=CGI_10017257; scaffold1061 GLEAN mRNA 447997 461905 0.999676 + . ID=CGI_10017257; scaffold1061 GLEAN promoter 464400 465399 0.991151 + . ID=CGI_10017258; scaffold1061 GLEAN mRNA 465400 466320 0.991151 + . ID=CGI_10017258; scaffold1061 TRF Tandem_Repeat 466960 467017 107 + . . scaffold1061 GLEAN promoter 468430 469429 0.575444 + . ID=CGI_10017259; scaffold1061 TRF Tandem_Repeat 468500 468557 116 + . . scaffold1061 GLEAN mRNA 469430 475339 0.575444 + . ID=CGI_10017259; scaffold1061 TRF Tandem_Repeat 472830 472980 241 + . . scaffold1061 TRF Tandem_Repeat 476989 477020 64 + . . scaffold1061 TRF Tandem_Repeat 480998 481023 52 + . . scaffold1061 GLEAN mRNA 485735 487973 1 - . ID=CGI_10017260; scaffold1061 GLEAN promoter 487974 488973 1 - . ID=CGI_10017260; scaffold1061 GLEAN mRNA 488376 496677 1 - . ID=CGI_10017261; scaffold1061 TRF Tandem_Repeat 491778 491826 98 + . . scaffold1061 GLEAN promoter 496678 497006 1 - . ID=CGI_10017261; scaffold1062 GLEAN mRNA 7819 14088 0.462682 - . ID=CGI_10005737; scaffold1062 WUBlastX LINE_L2 8530 8805 73 + . . scaffold1062 WUBlastX LINE_CR1 8611 8805 107 + . . scaffold1062 WUBlastX LINE_CR1 8650 8805 139 + . . scaffold1062 WUBlastX LINE_CR1 8793 9104 152 + . . scaffold1062 WUBlastX LINE_CR1-L2 9098 9613 31 + . . scaffold1062 WUBlastX LINE_CR1 9104 9529 129 + . . scaffold1062 TRF Tandem_Repeat 11898 11991 111 + . . scaffold1062 TRF Tandem_Repeat 13953 14011 50 + . . scaffold1062 GLEAN promoter 14089 15088 0.462682 - . ID=CGI_10005737; scaffold1062 GLEAN promoter 14583 15582 0.999981 + . ID=CGI_10005738; scaffold1062 GLEAN mRNA 15583 15969 0.999981 + . ID=CGI_10005738; scaffold1062 TRF Tandem_Repeat 16189 16335 91 + . . scaffold1062 TRF Tandem_Repeat 17293 17443 95 + . . scaffold1062 TRF Tandem_Repeat 17335 17535 147 + . . scaffold1062 WUBlastX LINE_L2 18893 19441 155 + . . scaffold1062 WUBlastX LINE_L2 18956 19420 220 + . . scaffold1062 TRF Tandem_Repeat 19455 20957 1697 + . . scaffold1062 GLEAN promoter 22054 23053 0.801512 + . ID=CGI_10005739; scaffold1062 GLEAN mRNA 23054 23275 0.801512 + . ID=CGI_10005739; scaffold1062 WUBlastX LTR_Pao 51444 52094 228 - . . scaffold1062 WUBlastX LTR_Pao 51546 52007 324 - . . scaffold1062 WUBlastX LTR_Pao 51567 52178 230 - . . scaffold1062 WUBlastX LTR_Pao 51980 52366 171 - . . scaffold1062 GLEAN mRNA 53093 53524 0.448641 - . ID=CGI_10005740; scaffold1062 GLEAN promoter 53525 54524 0.448641 - . ID=CGI_10005740; scaffold1062 WUBlastX LINE_RTE-X 55634 55810 126 + . . scaffold1062 WUBlastX LINE_RTE-X 55824 57386 717 + . . scaffold1062 WUBlastX LINE_RTE-X 57362 57883 285 + . . scaffold1062 WUBlastX LINE_RTE-X 57820 57936 50 + . . scaffold1062 WUBlastX LINE_RTE-X 63784 64635 62 + . . scaffold1062 WUBlastX LINE_RTE-X 63958 64650 322 + . . scaffold1062 WUBlastX LINE_RTE-X 64631 64915 97 + . . scaffold1062 GLEAN promoter 67876 68875 0.64555 + . ID=CGI_10005741; scaffold1062 GLEAN mRNA 68876 80668 0.64555 + . ID=CGI_10005741; scaffold1062 TRF Tandem_Repeat 70442 70486 90 + . . scaffold1062 WUBlastX LTR_Gypsy 75968 76102 85 + . . scaffold1062 TRF Tandem_Repeat 76116 76182 89 + . . scaffold1062 TRF Tandem_Repeat 76703 76789 129 + . . scaffold1062 TRF Tandem_Repeat 76968 77024 114 + . . scaffold1062 TRF Tandem_Repeat 79393 79459 89 + . . scaffold1062 WUBlastX LINE_L2 86365 87258 110 - . . scaffold1062 WUBlastX LINE_CR1-L2 86917 87312 165 - . . scaffold1062 WUBlastX LINE_CR1-L2 88705 89895 188 - . . scaffold1062 WUBlastX LINE_CR1 89494 89970 56 - . . scaffold1062 WUBlastX LTR_Gypsy-Troyk 100357 100791 158 - . . scaffold1062 GLEAN mRNA 100465 126410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LTR_Gypsy-Troyk 100824 101606 132 - . . scaffold1062 WUBlastX LTR_Gypsy-Troyk 100973 101899 280 - . . scaffold1062 WUBlastX LTR_Gypsy-Troyk 101848 103113 664 - . . scaffold1062 WUBlastX LTR_Gypsy-Troyk 103638 104633 280 - . . scaffold1062 WUBlastX LTR_Gypsy-Troyk 104175 104639 292 - . . scaffold1062 WUBlastX LTR_Gypsy-Troyk 104654 104827 109 - . . scaffold1062 WUBlastX DNA_Crypton 107220 108275 172 + . . scaffold1062 WUBlastX DNA_Crypton 107436 108287 188 + . . scaffold1062 GLEAN promoter 126411 127410 0.975343 - . ID=CGI_10005742; scaffold1062 WUBlastX LINE_RTE-X 129490 129765 56 - . . scaffold1062 WUBlastX LINE_RTE-X 130387 130554 30 - . . scaffold1062 WUBlastX LINE_RTE-X 130423 130551 35 - . . scaffold1062 WUBlastX LINE_RTE-X 130459 130857 72 - . . scaffold1062 TRF Tandem_Repeat 130621 130671 68 + . . scaffold1062 TRF Tandem_Repeat 130622 130668 60 + . . scaffold1062 TRF Tandem_Repeat 133586 133691 140 + . . scaffold1062 WUBlastX LINE_L1 134143 134340 25 - . . scaffold1062 WUBlastX LINE_L1-Tx1 134402 134719 53 - . . scaffold1062 WUBlastX LINE_L1 134414 134632 67 - . . scaffold1063 WUBlastX LTR_Copia 62 1459 604 + . . scaffold1063 WUBlastX LTR_Copia 272 1417 1517 + . . scaffold1063 WUBlastX LTR_Copia 1428 2984 2212 + . . scaffold1064 TRF Tandem_Repeat 11016 11049 50 + . . scaffold1064 GLEAN promoter 11277 12276 0.866433 + . ID=CGI_10006531; scaffold1064 GLEAN mRNA 12277 12612 0.866433 + . ID=CGI_10006531; scaffold1064 WUBlastX DNA_Harbinger 16096 16308 88 + . . scaffold1064 GLEAN mRNA 16509 26982 0.999949 - . ID=CGI_10006532; scaffold1064 TRF Tandem_Repeat 21181 21221 50 + . . scaffold1064 TRF Tandem_Repeat 23245 23450 304 + . . scaffold1064 GLEAN promoter 26983 27982 0.999949 - . ID=CGI_10006532; scaffold1064 GLEAN mRNA 30354 37296 1 - . ID=CGI_10006533; scaffold1064 GLEAN promoter 37297 38296 1 - . ID=CGI_10006533; scaffold1064 GLEAN mRNA 39586 43009 1 - . ID=CGI_10006534; scaffold1064 GLEAN promoter 42495 43494 1 + . ID=CGI_10006535; scaffold1064 GLEAN promoter 43010 44009 1 - . ID=CGI_10006534; scaffold1064 GLEAN mRNA 43495 50571 1 + . ID=CGI_10006535; scaffold1064 TRF Tandem_Repeat 47561 47619 118 + . . scaffold1064 TRF Tandem_Repeat 48262 48295 54 + . . scaffold1064 GLEAN mRNA 53938 66648 0.999014 - . ID=CGI_10006536; scaffold1064 TRF Tandem_Repeat 55420 55660 313 + . . scaffold1064 TRF Tandem_Repeat 56528 56768 311 + . . scaffold1064 GLEAN promoter 66649 67648 0.999014 - . ID=CGI_10006536; scaffold1064 GLEAN promoter 68641 69640 0.999372 + . ID=CGI_10006537; scaffold1064 WUBlastX LTR_Gypsy 69545 70189 25 + . . scaffold1064 GLEAN mRNA 69641 70024 0.999372 + . ID=CGI_10006537; scaffold1064 GLEAN mRNA 89269 98244 0.84036 - . ID=CGI_10006539; scaffold1064 TRF Tandem_Repeat 92327 92366 71 + . . scaffold1064 GLEAN promoter 98245 99244 0.84036 - . ID=CGI_10006539; scaffold1064 WUBlastX DNA_Harbinger 100169 100330 52 - . . scaffold1064 WUBlastX DNA_hAT-hATw 101351 101434 38 - . . scaffold1064 WUBlastX DNA_hAT-hATw 101571 103076 571 - . . scaffold1064 WUBlastX DNA_hAT-hATw 103057 103404 79 - . . scaffold1064 WUBlastX LTR_DIRS 113934 114719 97 - . . scaffold1064 GLEAN mRNA 126880 128084 0.999661 - . ID=CGI_10006540; scaffold1064 GLEAN promoter 128085 129084 0.999661 - . ID=CGI_10006540; scaffold1064 GLEAN promoter 130569 131568 1 + . ID=CGI_10006541; scaffold1064 GLEAN mRNA 131569 131997 1 + . ID=CGI_10006541; scaffold1064 WUBlastX LINE_RTE-X 139132 139593 96 - . . scaffold1064 WUBlastX LINE_RTE-X 139641 139913 53 - . . scaffold1064 WUBlastX LINE_RTE-X 139725 139880 90 - . . scaffold1064 WUBlastX LINE_RTE-X 139728 140042 76 - . . scaffold1064 WUBlastX LINE_RTE-X 139782 139922 83 - . . scaffold1064 WUBlastX LINE_RTE-X 140062 140427 36 - . . scaffold1064 WUBlastX LINE_RTE-X 140188 140427 67 - . . scaffold1064 WUBlastX LINE_RTE-X 140236 140496 70 - . . scaffold1064 WUBlastX LINE_RTE-X 140468 140530 26 + . . scaffold1064 WUBlastX LINE_RTE-X 140541 140783 66 + . . scaffold1064 WUBlastX LINE_RTE-X 140562 140879 44 + . . scaffold1064 TRF Tandem_Repeat 141395 141438 61 + . . scaffold1064 GLEAN mRNA 145900 146517 0.999999 - . ID=CGI_10006542; scaffold1064 GLEAN promoter 146518 147517 0.999999 - . ID=CGI_10006542; scaffold1064 TRF Tandem_Repeat 146719 146792 87 + . . scaffold1064 WUBlastX DNA_MuDR 147339 147458 49 - . . scaffold1064 GLEAN promoter 150610 151609 0.999984 + . ID=CGI_10006543; scaffold1064 GLEAN mRNA 151610 152056 0.999984 + . ID=CGI_10006543; scaffold1064 TRF Tandem_Repeat 154691 154782 175 + . . scaffold1066 TRF Tandem_Repeat 2057 2329 402 + . . scaffold1066 GLEAN mRNA 5431 6622 0.928703 - . ID=CGI_10012657; scaffold1066 TRF Tandem_Repeat 5455 5484 60 + . . scaffold1066 WUBlastX DNA_Crypton 5987 6268 100 - . . scaffold1066 GLEAN promoter 6623 7622 0.928703 - . ID=CGI_10012657; scaffold1066 WUBlastX LINE_L2-Hydra 43088 43381 63 - . . scaffold1066 WUBlastX LINE_RTE-X 43375 43653 28 - . . scaffold1066 TRF Tandem_Repeat 44143 44180 76 + . . scaffold1066 WUBlastX LINE_CR1-L2 44217 44327 34 - . . scaffold1066 WUBlastX LINE_L2 44247 44327 38 - . . scaffold1066 WUBlastX LINE_RTE-X 44256 44384 33 - . . scaffold1066 WUBlastX LINE_I 44262 44327 39 - . . scaffold1066 WUBlastX LINE_RTE-X 44428 44670 42 - . . scaffold1066 WUBlastX LINE_RTE-X 44440 44616 53 - . . scaffold1066 WUBlastX LINE_Jockey 44666 44959 25 - . . scaffold1066 WUBlastX LINE_RTE-X 44699 44926 35 - . . scaffold1066 TRF Tandem_Repeat 46788 46827 80 + . . scaffold1066 TRF Tandem_Repeat 47445 47518 148 + . . scaffold1066 TRF Tandem_Repeat 64634 64663 51 + . . scaffold1066 TRF Tandem_Repeat 69892 70295 459 + . . scaffold1066 TRF Tandem_Repeat 71039 71347 273 + . . scaffold1066 TRF Tandem_Repeat 71729 73129 1046 + . . scaffold1066 TRF Tandem_Repeat 71729 73133 965 + . . scaffold1066 TRF Tandem_Repeat 71782 73141 688 + . . scaffold1066 WUBlastX DNA_Kolobok-Hyd 81487 81675 25 - . . scaffold1066 WUBlastX DNA_Kolobok-Hyd 81788 82462 27 - . . scaffold1066 WUBlastX DNA_Kolobok-Hyd 82827 82895 32 - . . scaffold1066 WUBlastX DNA_Kolobok-Hyd 83476 83703 27 - . . scaffold1066 TRF Tandem_Repeat 84238 84317 151 + . . scaffold1066 WUBlastX DNA_Harbinger 89945 90238 212 - . . scaffold1066 WUBlastX DNA_Harbinger 89948 90430 158 - . . scaffold1066 WUBlastX DNA_Harbinger 90352 90606 33 - . . scaffold1066 WUBlastX DNA_Harbinger 90352 90555 72 - . . scaffold1066 TRF Tandem_Repeat 90680 90733 99 + . . scaffold1066 WUBlastX DNA_Harbinger 90807 90944 50 - . . scaffold1066 WUBlastX DNA_Harbinger 91139 91360 80 - . . scaffold1066 TRF Tandem_Repeat 96521 96571 102 + . . scaffold1066 WUBlastX LTR_Pao 107089 107199 50 + . . scaffold1066 WUBlastX LTR_Pao 107107 107199 62 + . . scaffold1066 WUBlastX LTR_Pao 107165 109327 988 + . . scaffold1066 WUBlastX LTR_Pao 109324 109818 283 + . . scaffold1066 WUBlastX LTR_Pao 109330 109722 339 + . . scaffold1066 WUBlastX LTR_Pao 109700 110035 60 + . . scaffold1066 WUBlastX LTR_Pao 109712 109870 145 + . . scaffold1066 WUBlastX LTR_Pao 109926 110816 778 + . . scaffold1066 WUBlastX LTR_Pao 110830 110940 50 + . . scaffold1066 WUBlastX DNA_TcMar-Fot1 121460 123295 420 + . . scaffold1066 TRF Tandem_Repeat 124482 124514 66 + . . scaffold1066 WUBlastX LTR_Gypsy 128281 128985 405 - . . scaffold1066 WUBlastX LTR_Gypsy 128927 129103 139 - . . scaffold1066 WUBlastX LTR_Gypsy 129102 131987 2441 - . . scaffold1066 WUBlastX LTR_Gypsy 132742 132939 78 - . . scaffold1066 WUBlastX LTR_Gypsy 133086 133187 22 - . . scaffold1066 WUBlastX LTR_Gypsy 133184 133525 73 - . . scaffold1066 WUBlastX LTR_Gypsy 133603 133701 69 - . . scaffold1066 WUBlastX LTR_Gypsy 134724 134981 114 - . . scaffold1066 TRF Tandem_Repeat 139891 139952 124 + . . scaffold1066 TRF Tandem_Repeat 164263 164366 104 + . . scaffold1066 GLEAN promoter 167191 168190 0.572431 + . ID=CGI_10012659; scaffold1066 GLEAN mRNA 168191 195874 0.572431 + . ID=CGI_10012659; scaffold1066 WUBlastX LTR_Gypsy-Cigr 168620 169012 131 + . . scaffold1066 WUBlastX LTR_Gypsy 169024 169806 70 + . . scaffold1066 WUBlastX LTR_Copia 169258 169797 71 + . . scaffold1066 WUBlastX LTR_Gypsy 169357 170625 176 + . . scaffold1066 WUBlastX LTR_Gypsy 169555 170643 365 + . . scaffold1066 WUBlastX LTR_Gypsy 169951 170910 150 + . . scaffold1066 WUBlastX LTR_Gypsy 170263 170712 190 + . . scaffold1066 TRF Tandem_Repeat 172498 172539 84 + . . scaffold1066 WUBlastX LTR_Gypsy 173189 174151 342 + . . scaffold1066 WUBlastX LTR_Gypsy 173339 175291 1282 + . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 175234 175806 333 + . . scaffold1066 WUBlastX LTR_Gypsy 175237 175908 203 + . . scaffold1066 WUBlastX LTR_Copia 175750 175944 37 + . . scaffold1066 WUBlastX LTR_Ngaro 176826 177557 260 - . . scaffold1066 WUBlastX LTR_Ngaro 177511 177648 21 - . . scaffold1066 WUBlastX LTR_Ngaro 177666 179297 817 - . . scaffold1066 WUBlastX LTR_Ngaro 179311 179730 25 - . . scaffold1066 WUBlastX LTR_Ngaro 179377 179772 55 - . . scaffold1066 WUBlastX LTR_Ngaro 179464 179769 129 - . . scaffold1066 WUBlastX LTR_Ngaro 179720 179902 42 - . . scaffold1066 TRF Tandem_Repeat 180934 181274 233 + . . scaffold1066 WUBlastX LTR_Pao 192745 193107 80 - . . scaffold1066 TRF Tandem_Repeat 193109 193310 181 + . . scaffold1066 WUBlastX LTR_Pao 193367 193852 129 - . . scaffold1066 WUBlastX LTR_Pao 193926 194099 23 - . . scaffold1066 GLEAN promoter 212903 213902 0.573293 + . ID=CGI_10012661; scaffold1066 GLEAN mRNA 213626 213817 0.776794 - . ID=CGI_10012660; scaffold1066 GLEAN promoter 213818 214817 0.776794 - . ID=CGI_10012660; scaffold1066 GLEAN mRNA 213903 214202 0.573293 + . ID=CGI_10012661; scaffold1066 TRF Tandem_Repeat 214769 215586 1104 + . . scaffold1066 WUBlastX LTR_DIRS 215771 216439 264 + . . scaffold1066 TRF Tandem_Repeat 221444 222271 682 + . . scaffold1066 WUBlastX LINE_L2 223194 223745 47 + . . scaffold1066 WUBlastX LTR_Ngaro 227113 227457 63 - . . scaffold1066 WUBlastX LTR_Ngaro 227438 227854 23 - . . scaffold1066 WUBlastX LTR_Ngaro 227567 227854 41 - . . scaffold1066 WUBlastX LTR_Ngaro 227615 227830 89 - . . scaffold1066 WUBlastX LTR_Ngaro 227999 228346 87 - . . scaffold1066 WUBlastX LTR_Ngaro 228026 228220 111 - . . scaffold1066 TRF Tandem_Repeat 228387 229508 1461 + . . scaffold1066 WUBlastX LTR_Ngaro 229562 229876 136 - . . scaffold1066 WUBlastX LTR_Ngaro 229879 230130 123 - . . scaffold1066 WUBlastX LTR_Ngaro 230121 230684 336 - . . scaffold1066 WUBlastX LTR_Ngaro 230638 230763 73 - . . scaffold1066 TRF Tandem_Repeat 230774 230881 182 + . . scaffold1066 WUBlastX LTR_Ngaro 231189 231359 69 - . . scaffold1066 TRF Tandem_Repeat 233740 233791 104 + . . scaffold1066 TRF Tandem_Repeat 237388 237437 66 + . . scaffold1066 TRF Tandem_Repeat 247611 247643 57 + . . scaffold1066 TRF Tandem_Repeat 247866 247941 152 + . . scaffold1066 WUBlastX DNA_Harbinger 248748 248891 54 + . . scaffold1066 WUBlastX DNA_Harbinger 249084 249350 83 + . . scaffold1066 WUBlastX DNA_Harbinger 249084 249302 95 + . . scaffold1066 WUBlastX DNA_Harbinger 251231 251548 50 - . . scaffold1066 WUBlastX DNA_Harbinger 251243 251506 201 - . . scaffold1066 WUBlastX DNA_Harbinger 251712 251789 34 - . . scaffold1066 WUBlastX DNA_Harbinger 251733 251819 43 - . . scaffold1066 WUBlastX LTR_Gypsy 251800 251907 78 + . . scaffold1066 WUBlastX LTR_Gypsy 251817 252308 154 + . . scaffold1066 WUBlastX LTR_Gypsy 251910 252338 265 + . . scaffold1066 WUBlastX LTR_Gypsy 251982 252410 67 + . . scaffold1066 WUBlastX LTR_Gypsy 253297 253749 136 + . . scaffold1066 TRF Tandem_Repeat 253312 253368 78 + . . scaffold1066 WUBlastX LTR_Gypsy 253369 253749 292 + . . scaffold1066 WUBlastX LTR_Gypsy 253734 255497 880 + . . scaffold1066 WUBlastX LTR_Gypsy 255453 255509 25 + . . scaffold1066 WUBlastX LTR_Gypsy 255796 255840 21 + . . scaffold1066 TRF Tandem_Repeat 261474 262131 852 + . . scaffold1066 WUBlastX LTR_Gypsy 264586 264675 23 - . . scaffold1066 WUBlastX LTR_Gypsy 264607 265308 60 - . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 264930 265511 173 - . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 266527 266760 44 - . . scaffold1066 WUBlastX LTR_Gypsy 266583 267032 94 - . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 266763 267032 112 - . . scaffold1066 WUBlastX LTR_Gypsy 267026 268036 546 - . . scaffold1066 WUBlastX LTR_Gypsy 268045 268437 302 - . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 268436 268531 92 - . . scaffold1066 WUBlastX LTR_Gypsy 268479 269006 124 - . . scaffold1066 WUBlastX LTR_Gypsy-Cigr 268488 268901 419 - . . scaffold1066 WUBlastX LTR_Gypsy 268903 269367 74 - . . scaffold1066 WUBlastX LTR_Gypsy 268966 269229 76 - . . scaffold1066 WUBlastX LTR_Gypsy 268978 269442 43 - . . scaffold1066 WUBlastX LTR_Gypsy 268987 269631 32 - . . scaffold1066 GLEAN promoter 273646 274645 0.725908 + . ID=CGI_10012662; scaffold1066 GLEAN mRNA 274646 290449 0.725908 + . ID=CGI_10012662; scaffold1066 TRF Tandem_Repeat 275772 275856 131 + . . scaffold1066 GLEAN mRNA 288484 307012 0.63589 - . ID=CGI_10012663; scaffold1066 GLEAN promoter 307013 308012 0.63589 - . ID=CGI_10012663; scaffold1067 GLEAN mRNA 8278 12842 1 - . ID=CGI_10004778; scaffold1067 GLEAN promoter 12843 13842 1 - . ID=CGI_10004778; scaffold1067 GLEAN mRNA 15295 35235 0.511419 - . ID=CGI_10004779; scaffold1067 TRF Tandem_Repeat 15311 15489 281 + . . scaffold1067 TRF Tandem_Repeat 16547 16920 434 + . . scaffold1067 TRF Tandem_Repeat 21189 21387 283 + . . scaffold1067 TRF Tandem_Repeat 27820 27856 74 + . . scaffold1067 TRF Tandem_Repeat 33181 33225 54 + . . scaffold1067 GLEAN promoter 35236 36235 0.511419 - . ID=CGI_10004779; scaffold1067 WUBlastX LINE_RTE-X 37095 37220 43 + . . scaffold1067 TRF Tandem_Repeat 39190 40005 1227 + . . scaffold1067 TRF Tandem_Repeat 41046 41120 150 + . . scaffold1067 GLEAN promoter 49692 50691 1 + . ID=CGI_10004780; scaffold1067 GLEAN mRNA 50692 56726 1 + . ID=CGI_10004780; scaffold1067 TRF Tandem_Repeat 59532 59654 117 + . . scaffold1067 TRF Tandem_Repeat 62374 62403 51 + . . scaffold1067 GLEAN promoter 67751 68750 0.98536 + . ID=CGI_10004781; scaffold1067 GLEAN mRNA 68751 78954 0.98536 + . ID=CGI_10004781; scaffold1067 WUBlastX DNA_Sola 87170 87814 168 - . . scaffold1067 WUBlastX DNA_Sola 87365 87835 189 - . . scaffold1067 WUBlastX DNA_Sola 88700 88885 44 - . . scaffold1067 WUBlastX DNA_Sola 88730 88918 76 - . . scaffold1067 WUBlastX DNA_Sola 88730 88996 61 - . . scaffold1067 WUBlastX DNA_Sola 89309 89425 65 - . . scaffold1067 GLEAN mRNA 91601 95874 1 - . ID=CGI_10004782; scaffold1067 GLEAN promoter 95875 96874 1 - . ID=CGI_10004782; scaffold1067 GLEAN mRNA 95944 108807 0.615405 - . ID=CGI_10004783; scaffold1067 WUBlastX DNA_En-Spm 98805 99824 98 + . . scaffold1067 WUBlastX DNA_En-Spm 98982 100034 247 + . . scaffold1067 WUBlastX DNA_En-Spm 99666 100829 276 + . . scaffold1067 WUBlastX DNA_Sola 101968 102288 124 - . . scaffold1067 WUBlastX DNA_Sola 101971 102387 86 - . . scaffold1067 WUBlastX DNA_Sola 102554 102739 34 - . . scaffold1067 WUBlastX DNA_Sola 102554 102847 32 - . . scaffold1067 WUBlastX DNA_Sola 102599 102775 107 - . . scaffold1067 TRF Tandem_Repeat 102862 102923 97 + . . scaffold1067 WUBlastX DNA_Sola 102989 103177 63 - . . scaffold1067 WUBlastX DNA_Sola 103040 103210 44 - . . scaffold1067 WUBlastX DNA_Sola 103426 103674 104 - . . scaffold1067 WUBlastX DNA_Sola 103815 104132 217 - . . scaffold1067 WUBlastX DNA_Sola 103863 104180 25 - . . scaffold1067 WUBlastX DNA_Sola 104287 104616 44 - . . scaffold1067 WUBlastX LINE_L1-Tx1 107490 107942 61 - . . scaffold1067 WUBlastX LINE_L1-Tx1 107559 107942 152 - . . scaffold1067 WUBlastX LINE_L1-Tx1 107568 108026 145 - . . scaffold1067 WUBlastX LINE_L1 108025 108489 73 - . . scaffold1067 WUBlastX LINE_L1-Tx1 108034 108327 97 - . . scaffold1067 WUBlastX LINE_L1-Tx1 108034 108411 76 - . . scaffold1067 GLEAN promoter 108808 109807 0.615405 - . ID=CGI_10004783; scaffold1068 TRF Tandem_Repeat 1 725 935 + . . scaffold1068 WUBlastX DNA_Kolobok-IS4 1260 1655 92 + . . scaffold1068 WUBlastX DNA_Kolobok-IS4 1657 1836 48 + . . scaffold1068 WUBlastX DNA_IS4EU 1814 1966 40 + . . scaffold1068 WUBlastX DNA_IS4EU 1941 2129 29 + . . scaffold1069 WUBlastX LINE_RTE-BovB 1 354 250 + . . scaffold1069 WUBlastX LINE_RTE-BovB 826 1008 77 + . . scaffold107 WUBlastX LTR_Pao 5276 5761 74 + . . scaffold107 WUBlastX LTR_Pao 5381 5770 184 + . . scaffold107 WUBlastX LTR_Pao 5760 5813 21 + . . scaffold107 TRF Tandem_Repeat 9811 10028 420 + . . scaffold107 GLEAN mRNA 10794 16966 0.999806 - . ID=CGI_10025039; scaffold107 TRF Tandem_Repeat 13903 13945 77 + . . scaffold107 GLEAN promoter 16967 17966 0.999806 - . ID=CGI_10025039; scaffold107 TRF Tandem_Repeat 17479 17697 54 + . . scaffold107 TRF Tandem_Repeat 18641 18694 108 + . . scaffold107 TRF Tandem_Repeat 18887 18937 102 + . . scaffold107 TRF Tandem_Repeat 19938 19986 98 + . . scaffold107 TRF Tandem_Repeat 20498 20586 90 + . . scaffold107 TRF Tandem_Repeat 20523 20586 58 + . . scaffold107 TRF Tandem_Repeat 20582 20672 73 + . . scaffold107 TRF Tandem_Repeat 22021 22089 129 + . . scaffold107 TRF Tandem_Repeat 43260 43304 81 + . . scaffold107 GLEAN mRNA 43937 50707 0.999806 - . ID=CGI_10025040; scaffold107 TRF Tandem_Repeat 47162 47213 70 + . . scaffold107 GLEAN promoter 50708 51707 0.999806 - . ID=CGI_10025040; scaffold107 GLEAN mRNA 50778 56510 0.999674 - . ID=CGI_10025041; scaffold107 GLEAN promoter 56511 57510 0.999674 - . ID=CGI_10025041; scaffold107 GLEAN promoter 56604 57603 0.544528 + . ID=CGI_10025042; scaffold107 GLEAN mRNA 57604 68229 0.544528 + . ID=CGI_10025042; scaffold107 WUBlastX LINE_L2 75282 75674 63 + . . scaffold107 WUBlastX LINE_RTE-X 75399 76172 164 + . . scaffold107 TRF Tandem_Repeat 76802 76852 57 + . . scaffold107 TRF Tandem_Repeat 77752 77835 161 + . . scaffold107 TRF Tandem_Repeat 78633 78692 57 + . . scaffold107 TRF Tandem_Repeat 100704 101010 140 + . . scaffold107 TRF Tandem_Repeat 100704 101054 185 + . . scaffold107 TRF Tandem_Repeat 101533 101687 75 + . . scaffold107 TRF Tandem_Repeat 101584 101687 86 + . . scaffold107 GLEAN promoter 108142 109141 0.998024 + . ID=CGI_10025043; scaffold107 GLEAN mRNA 109142 115451 0.998024 + . ID=CGI_10025043; scaffold107 TRF Tandem_Repeat 119943 120030 108 + . . scaffold107 TRF Tandem_Repeat 120225 120258 50 + . . scaffold107 TRF Tandem_Repeat 126667 126724 57 + . . scaffold107 GLEAN mRNA 126838 146183 0.896861 - . ID=CGI_10025044; scaffold107 WUBlastX RC_Helitron 135482 135763 86 - . . scaffold107 TRF Tandem_Repeat 143553 143597 90 + . . scaffold107 GLEAN promoter 146184 147183 0.896861 - . ID=CGI_10025044; scaffold107 WUBlastX LTR_Pao 160966 161244 104 + . . scaffold107 WUBlastX LTR_Pao 161008 161934 298 + . . scaffold107 WUBlastX LINE_CR1-L2 164300 164521 29 - . . scaffold107 WUBlastX LINE_CR1-L2 164396 164965 170 - . . scaffold107 WUBlastX LINE_CR1-L2 164567 164869 203 - . . scaffold107 WUBlastX LINE_CR1-L2 164872 165087 106 - . . scaffold107 WUBlastX LINE_L2 165024 165587 173 - . . scaffold107 WUBlastX LINE_CR1-L2 165108 165515 268 - . . scaffold107 WUBlastX LINE_L2 165517 166137 273 - . . scaffold107 WUBlastX LINE_L2 165517 166383 134 - . . scaffold107 WUBlastX LINE_L2 166257 166958 76 - . . scaffold107 WUBlastX LINE_CR1-L2 166329 166850 165 - . . scaffold107 WUBlastX LINE_I 166891 167001 24 - . . scaffold107 WUBlastX LINE_L1-Tx1 171363 171719 126 - . . scaffold107 GLEAN mRNA 175831 189017 0.383501 - . ID=CGI_10025045; scaffold107 GLEAN promoter 189018 190017 0.383501 - . ID=CGI_10025045; scaffold107 GLEAN promoter 191002 192001 0.649414 + . ID=CGI_10025046; scaffold107 GLEAN mRNA 192002 192406 0.649414 + . ID=CGI_10025046; scaffold107 TRF Tandem_Repeat 197937 198001 121 + . . scaffold107 TRF Tandem_Repeat 235488 235531 61 + . . scaffold107 TRF Tandem_Repeat 268763 268802 80 + . . scaffold107 GLEAN mRNA 270332 271738 0.986069 - . ID=CGI_10025047; scaffold107 GLEAN promoter 271739 272738 0.986069 - . ID=CGI_10025047; scaffold107 TRF Tandem_Repeat 275171 276008 1189 + . . scaffold107 TRF Tandem_Repeat 276019 276081 108 + . . scaffold107 GLEAN mRNA 277208 278878 0.558382 - . ID=CGI_10025048; scaffold107 GLEAN promoter 278879 279878 0.558382 - . ID=CGI_10025048; scaffold107 TRF Tandem_Repeat 284885 284925 82 + . . scaffold107 TRF Tandem_Repeat 290253 290307 74 + . . scaffold107 TRF Tandem_Repeat 291417 291475 118 + . . scaffold107 GLEAN promoter 291967 292966 0.999992 + . ID=CGI_10025049; scaffold107 GLEAN mRNA 292967 297414 0.999992 + . ID=CGI_10025049; scaffold107 TRF Tandem_Repeat 299285 299322 76 + . . scaffold107 GLEAN promoter 299459 300458 0.570212 + . ID=CGI_10025050; scaffold107 TRF Tandem_Repeat 300002 300048 69 + . . scaffold107 GLEAN mRNA 300459 320041 0.570212 + . ID=CGI_10025050; scaffold107 TRF Tandem_Repeat 309428 309475 69 + . . scaffold107 TRF Tandem_Repeat 310526 310621 183 + . . scaffold107 TRF Tandem_Repeat 315103 315212 143 + . . scaffold107 TRF Tandem_Repeat 321006 321081 109 + . . scaffold107 GLEAN promoter 322190 323189 1 + . ID=CGI_10025051; scaffold107 GLEAN mRNA 323190 332025 1 + . ID=CGI_10025051; scaffold107 TRF Tandem_Repeat 329216 329254 78 + . . scaffold107 GLEAN promoter 334767 335766 0.999351 + . ID=CGI_10025052; scaffold107 GLEAN mRNA 335767 348194 0.999351 + . ID=CGI_10025052; scaffold107 GLEAN promoter 378134 379133 0.992486 + . ID=CGI_10025053; scaffold107 TRF Tandem_Repeat 378234 378268 70 + . . scaffold107 TRF Tandem_Repeat 378615 378651 60 + . . scaffold107 GLEAN mRNA 379134 384865 0.992486 + . ID=CGI_10025053; scaffold107 WUBlastX LINE_R2-Hero 397258 397995 373 - . . scaffold107 WUBlastX LINE_R2-Hero 398025 398102 21 - . . scaffold107 WUBlastX LINE_R2-Hero 398565 398804 171 - . . scaffold107 WUBlastX LINE_R2-Hero 398568 398912 168 - . . scaffold107 TRF Tandem_Repeat 417868 417901 68 + . . scaffold107 TRF Tandem_Repeat 425110 425231 100 + . . scaffold107 TRF Tandem_Repeat 430731 430766 72 + . . scaffold107 TRF Tandem_Repeat 434217 434248 64 + . . scaffold107 TRF Tandem_Repeat 435063 435134 53 + . . scaffold107 GLEAN promoter 435758 436757 0.593391 + . ID=CGI_10025054; scaffold107 GLEAN mRNA 436758 445981 0.593391 + . ID=CGI_10025054; scaffold107 GLEAN mRNA 449056 473669 0.986168 - . ID=CGI_10025055; scaffold107 TRF Tandem_Repeat 458504 458533 51 + . . scaffold107 WUBlastX LINE_RTE-X 458823 459569 233 - . . scaffold107 WUBlastX LINE_RTE-X 458823 459815 148 - . . scaffold107 TRF Tandem_Repeat 460621 460669 98 + . . scaffold107 TRF Tandem_Repeat 464390 464414 50 + . . scaffold107 GLEAN promoter 473670 474669 0.986168 - . ID=CGI_10025055; scaffold107 TRF Tandem_Repeat 481006 481038 66 + . . scaffold107 GLEAN promoter 481349 482348 0.436429 + . ID=CGI_10025056; scaffold107 GLEAN mRNA 482349 496880 0.436429 + . ID=CGI_10025056; scaffold107 TRF Tandem_Repeat 488484 488533 100 + . . scaffold107 WUBlastX LINE_RTE-X 495681 495842 33 + . . scaffold107 WUBlastX LINE_RTE-X 495753 495842 40 + . . scaffold107 WUBlastX LINE_RTE-X 496035 496829 47 + . . scaffold107 WUBlastX LINE_RTE-X 496849 496995 29 + . . scaffold107 WUBlastX LINE_RTE-X 497695 498096 87 + . . scaffold107 WUBlastX LINE_RTE-X 498036 499706 688 + . . scaffold107 WUBlastX LINE_RTE-X 499706 500527 366 + . . scaffold107 WUBlastX LINE_RTE-X 500526 501101 67 + . . scaffold107 WUBlastX LINE_RTE-X 500709 501158 86 + . . scaffold107 TRF Tandem_Repeat 510407 510460 108 + . . scaffold107 GLEAN mRNA 510796 516071 0.999676 - . ID=CGI_10025057; scaffold107 TRF Tandem_Repeat 513892 513950 52 + . . scaffold107 TRF Tandem_Repeat 513892 513942 56 + . . scaffold107 TRF Tandem_Repeat 514791 514843 52 + . . scaffold107 GLEAN promoter 515372 516371 1 + . ID=CGI_10025058; scaffold107 GLEAN promoter 516072 517071 0.999676 - . ID=CGI_10025057; scaffold107 GLEAN mRNA 516372 520701 1 + . ID=CGI_10025058; scaffold107 TRF Tandem_Repeat 517665 517703 78 + . . scaffold107 TRF Tandem_Repeat 521751 521969 215 + . . scaffold107 TRF Tandem_Repeat 521753 521837 51 + . . scaffold107 TRF Tandem_Repeat 522856 523162 578 + . . scaffold107 WUBlastX LINE_L1-Tx1 531265 532071 538 + . . scaffold107 WUBlastX LINE_L1-Tx1 532062 533429 395 + . . scaffold107 TRF Tandem_Repeat 533466 533510 90 + . . scaffold107 GLEAN mRNA 533954 541901 0.990768 - . ID=CGI_10025059; scaffold107 GLEAN promoter 541463 542462 0.592352 + . ID=CGI_10025060; scaffold107 TRF Tandem_Repeat 541735 541770 54 + . . scaffold107 GLEAN promoter 541902 542901 0.990768 - . ID=CGI_10025059; scaffold107 GLEAN mRNA 542463 558772 0.592352 + . ID=CGI_10025060; scaffold107 GLEAN mRNA 549550 549966 0.999768 - . ID=CGI_10025061; scaffold107 GLEAN promoter 549967 550966 0.999768 - . ID=CGI_10025061; scaffold107 WUBlastX LTR_Pao 551638 551982 58 - . . scaffold107 WUBlastX LTR_Pao 551668 552039 29 - . . scaffold107 TRF Tandem_Repeat 555649 555696 60 + . . scaffold107 GLEAN promoter 564487 565486 0.792407 + . ID=CGI_10025062; scaffold107 GLEAN mRNA 565487 575460 0.792407 + . ID=CGI_10025062; scaffold107 TRF Tandem_Repeat 569640 569676 74 + . . scaffold107 TRF Tandem_Repeat 570890 570935 92 + . . scaffold107 TRF Tandem_Repeat 571307 571344 60 + . . scaffold107 TRF Tandem_Repeat 572773 572974 84 + . . scaffold107 GLEAN mRNA 574715 584836 0.960818 - . ID=CGI_10025063; scaffold107 GLEAN promoter 575286 576285 1 + . ID=CGI_10025064; scaffold107 GLEAN mRNA 576286 584997 1 + . ID=CGI_10025064; scaffold107 GLEAN promoter 584837 585836 0.960818 - . ID=CGI_10025063; scaffold107 GLEAN promoter 585864 586863 0.999502 + . ID=CGI_10025065; scaffold107 GLEAN mRNA 586864 592608 0.999502 + . ID=CGI_10025065; scaffold107 GLEAN mRNA 593768 605048 0.844534 - . ID=CGI_10025066; scaffold107 GLEAN promoter 599461 600460 0.999834 + . ID=CGI_10025067; scaffold107 GLEAN mRNA 600461 602720 0.999834 + . ID=CGI_10025067; scaffold107 TRF Tandem_Repeat 602989 603048 120 + . . scaffold107 TRF Tandem_Repeat 603112 603141 60 + . . scaffold107 GLEAN promoter 605049 606048 0.844534 - . ID=CGI_10025066; scaffold107 GLEAN mRNA 606289 653246 0.458439 - . ID=CGI_10025068; scaffold107 TRF Tandem_Repeat 631674 631739 123 + . . scaffold107 TRF Tandem_Repeat 634153 634188 63 + . . scaffold107 GLEAN promoter 653247 654246 0.458439 - . ID=CGI_10025068; scaffold107 TRF Tandem_Repeat 653674 653702 58 + . . scaffold107 TRF Tandem_Repeat 653702 653743 84 + . . scaffold107 GLEAN promoter 657138 658137 0.993906 + . ID=CGI_10025069; scaffold107 GLEAN mRNA 658138 660324 0.993906 + . ID=CGI_10025069; scaffold107 WUBlastX LINE_RTE-X 665176 665424 24 - . . scaffold107 GLEAN promoter 665463 666462 0.531613 + . ID=CGI_10025070; scaffold107 WUBlastX LINE_RTE-X 665534 665635 37 - . . scaffold107 WUBlastX LINE_RTE-X 665549 665662 37 - . . scaffold107 GLEAN mRNA 666463 668127 0.531613 + . ID=CGI_10025070; scaffold107 WUBlastX LTR_Gypsy 672560 672613 24 + . . scaffold107 WUBlastX LTR_Gypsy 672781 672936 21 + . . scaffold107 WUBlastX LTR_Gypsy 673373 674455 642 + . . scaffold107 WUBlastX LTR_Gypsy 673379 674653 546 + . . scaffold107 GLEAN promoter 673933 674932 0.933614 + . ID=CGI_10025071; scaffold107 WUBlastX LTR_Copia 674639 674794 25 + . . scaffold107 GLEAN mRNA 674933 675499 0.933614 + . ID=CGI_10025071; scaffold107 TRF Tandem_Repeat 676900 678802 2588 + . . scaffold107 GLEAN mRNA 680992 688279 0.635053 - . ID=CGI_10025072; scaffold107 GLEAN promoter 682642 683641 0.913521 + . ID=CGI_10025073; scaffold107 GLEAN mRNA 683642 707960 0.913521 + . ID=CGI_10025073; scaffold107 GLEAN promoter 688280 689279 0.635053 - . ID=CGI_10025072; scaffold107 TRF Tandem_Repeat 693305 693335 53 + . . scaffold107 TRF Tandem_Repeat 712638 712731 80 + . . scaffold107 TRF Tandem_Repeat 712659 712750 94 + . . scaffold107 WUBlastX LINE_L1-Tx1 736504 736632 37 + . . scaffold107 WUBlastX LINE_L1-Tx1 736842 736898 29 + . . scaffold107 WUBlastX LINE_L1-Tx1 736991 737179 56 + . . scaffold107 WUBlastX LINE_L1-Tx1 737295 737345 22 + . . scaffold107 WUBlastX LINE_L1-Tx1 737365 737688 35 + . . scaffold107 TRF Tandem_Repeat 739959 740002 88 + . . scaffold107 TRF Tandem_Repeat 740287 740322 54 + . . scaffold107 TRF Tandem_Repeat 745194 745242 50 + . . scaffold107 WUBlastX LTR_Gypsy 747023 747796 64 - . . scaffold107 WUBlastX LTR_Gypsy 747509 747796 83 - . . scaffold107 WUBlastX LTR_Gypsy 747569 747802 126 - . . scaffold107 WUBlastX LTR_Gypsy 747569 747844 72 - . . scaffold107 WUBlastX LTR_Gypsy-Cigr 747805 747957 47 - . . scaffold107 WUBlastX LTR_Gypsy 747814 747927 54 - . . scaffold107 WUBlastX LTR_Gypsy 747960 748004 42 - . . scaffold107 WUBlastX LTR_Gypsy 747998 748267 78 - . . scaffold107 WUBlastX LTR_Gypsy-Cigr 747998 748213 95 - . . scaffold107 WUBlastX LTR_Gypsy 748269 748430 23 - . . scaffold107 WUBlastX LTR_Gypsy 748326 748460 34 - . . scaffold107 WUBlastX LTR_Gypsy 748729 748839 27 - . . scaffold107 WUBlastX LTR_Gypsy 748824 749012 23 - . . scaffold107 WUBlastX LINE_L1-Tx1 760149 760652 37 + . . scaffold107 WUBlastX LINE_L1-Tx1 760227 760655 183 + . . scaffold107 WUBlastX LINE_L1 760610 761044 91 + . . scaffold107 WUBlastX LINE_L1-Tx1 761145 762134 229 + . . scaffold107 WUBlastX LINE_L1 761883 762191 49 + . . scaffold107 WUBlastX LINE_CR1-L2 772478 772630 39 + . . scaffold107 WUBlastX LINE_RTE-BovB 775954 776133 63 + . . scaffold107 WUBlastX LINE_RTE-BovB 776118 776813 575 + . . scaffold107 WUBlastX DNA_Academ 781880 782068 62 + . . scaffold107 WUBlastX DNA_Academ 782114 783037 288 + . . scaffold107 WUBlastX DNA_Academ 783866 784267 236 + . . scaffold107 WUBlastX DNA_Academ 784467 785273 436 + . . scaffold107 WUBlastX DNA_Academ 785277 785705 205 + . . scaffold107 WUBlastX DNA_Academ 785717 785965 126 + . . scaffold107 WUBlastX RC_Helitron 795430 795582 46 + . . scaffold107 WUBlastX RC_Helitron 795672 795872 34 + . . scaffold107 WUBlastX RC_Helitron 796166 796480 52 + . . scaffold107 WUBlastX RC_Helitron 796175 796405 88 + . . scaffold107 WUBlastX DNA_P 799221 800015 97 - . . scaffold107 WUBlastX DNA_P 800077 800472 68 - . . scaffold107 WUBlastX LINE_L2 805283 805465 60 + . . scaffold107 WUBlastX LINE_L1 805289 805519 35 + . . scaffold107 WUBlastX LINE_RTE-BovB 805518 805715 21 + . . scaffold107 TRF Tandem_Repeat 827167 827200 68 + . . scaffold107 TRF Tandem_Repeat 828485 829038 646 + . . scaffold107 TRF Tandem_Repeat 828487 829038 504 + . . scaffold107 TRF Tandem_Repeat 828487 829038 559 + . . scaffold107 TRF Tandem_Repeat 832550 832604 65 + . . scaffold107 TRF Tandem_Repeat 832553 832608 71 + . . scaffold107 TRF Tandem_Repeat 833667 834161 580 + . . scaffold107 TRF Tandem_Repeat 833667 834161 485 + . . scaffold107 TRF Tandem_Repeat 834632 834683 104 + . . scaffold107 WUBlastX LINE_Penelope 838549 839670 129 - . . scaffold107 TRF Tandem_Repeat 856918 856958 82 + . . scaffold107 WUBlastX DNA_Crypton 859356 859895 167 + . . scaffold107 WUBlastX DNA_Crypton 860134 860316 105 + . . scaffold107 WUBlastX LINE_L1-Tx1 860806 861294 63 + . . scaffold107 TRF Tandem_Repeat 865206 865295 99 + . . scaffold107 TRF Tandem_Repeat 866783 866889 142 + . . scaffold107 GLEAN mRNA 873371 873959 0.74915 - . ID=CGI_10025074; scaffold107 GLEAN promoter 873960 874959 0.74915 - . ID=CGI_10025074; scaffold107 TRF Tandem_Repeat 879442 879486 90 + . . scaffold107 WUBlastX DNA_Crypton 887990 888412 120 - . . scaffold107 WUBlastX DNA_Crypton 888390 888884 97 - . . scaffold107 TRF Tandem_Repeat 891442 891490 98 + . . scaffold107 TRF Tandem_Repeat 892190 892318 138 + . . scaffold107 TRF Tandem_Repeat 892560 892601 84 + . . scaffold107 TRF Tandem_Repeat 892616 892692 111 + . . scaffold107 WUBlastX DNA_NOF 896772 896888 106 + . . scaffold107 WUBlastX DNA_NOF 896881 897063 108 + . . scaffold107 TRF Tandem_Repeat 898837 898870 68 + . . scaffold107 TRF Tandem_Repeat 899545 899604 120 + . . scaffold107 WUBlastX LINE_Penelope 905265 905552 46 + . . scaffold107 TRF Tandem_Repeat 912147 912186 80 + . . scaffold107 GLEAN mRNA 917268 923085 0.982758 - . ID=CGI_10025075; scaffold107 GLEAN promoter 923086 924085 0.982758 - . ID=CGI_10025075; scaffold107 TRF Tandem_Repeat 930113 930154 84 + . . scaffold107 TRF Tandem_Repeat 938379 938892 469 + . . scaffold107 TRF Tandem_Repeat 938388 938894 721 + . . scaffold107 TRF Tandem_Repeat 939917 939943 54 + . . scaffold107 TRF Tandem_Repeat 940442 940501 120 + . . scaffold107 GLEAN promoter 943449 944448 1 + . ID=CGI_10025076; scaffold107 GLEAN mRNA 944449 952597 1 + . ID=CGI_10025076; scaffold107 TRF Tandem_Repeat 946099 946196 160 + . . scaffold107 TRF Tandem_Repeat 955717 955763 94 + . . scaffold107 GLEAN promoter 958324 959323 1 + . ID=CGI_10025078; scaffold107 GLEAN mRNA 958555 983848 0.535457 - . ID=CGI_10025077; scaffold107 GLEAN mRNA 959324 970073 1 + . ID=CGI_10025078; scaffold107 TRF Tandem_Repeat 981127 981830 855 + . . scaffold107 TRF Tandem_Repeat 983250 983605 358 + . . scaffold107 GLEAN promoter 983849 984848 0.535457 - . ID=CGI_10025077; scaffold107 TRF Tandem_Repeat 984910 984965 112 + . . scaffold107 TRF Tandem_Repeat 987954 987986 66 + . . scaffold107 TRF Tandem_Repeat 988299 988339 64 + . . scaffold107 WUBlastX LINE_Jockey 992080 992625 33 - . . scaffold107 WUBlastX LINE_CR1 992404 992772 54 - . . scaffold107 TRF Tandem_Repeat 993514 993744 329 + . . scaffold107 GLEAN mRNA 996510 1010951 0.999145 - . ID=CGI_10025079; scaffold107 GLEAN promoter 1010300 1011299 0.33291 + . ID=CGI_10025080; scaffold107 GLEAN promoter 1010952 1011951 0.999145 - . ID=CGI_10025079; scaffold107 GLEAN mRNA 1011300 1022063 0.33291 + . ID=CGI_10025080; scaffold107 TRF Tandem_Repeat 1012629 1012691 60 + . . scaffold107 TRF Tandem_Repeat 1016300 1016349 57 + . . scaffold107 TRF Tandem_Repeat 1016522 1017267 1223 + . . scaffold107 GLEAN mRNA 1026222 1027896 1 - . ID=CGI_10025081; scaffold107 GLEAN promoter 1027897 1028272 1 - . ID=CGI_10025081; scaffold1070 GLEAN mRNA 10960 13740 0.975951 - . ID=CGI_10004514; scaffold1070 TRF Tandem_Repeat 11779 11842 128 + . . scaffold1070 GLEAN promoter 13741 14740 0.975951 - . ID=CGI_10004514; scaffold1070 TRF Tandem_Repeat 16654 17108 429 + . . scaffold1070 TRF Tandem_Repeat 16654 19304 1596 + . . scaffold1070 TRF Tandem_Repeat 17144 19304 760 + . . scaffold1070 GLEAN promoter 23069 24068 0.352689 + . ID=CGI_10004515; scaffold1070 GLEAN mRNA 24069 39987 0.352689 + . ID=CGI_10004515; scaffold1070 TRF Tandem_Repeat 28239 28415 293 + . . scaffold1070 TRF Tandem_Repeat 29649 29674 52 + . . scaffold1070 TRF Tandem_Repeat 29791 30533 1000 + . . scaffold1070 TRF Tandem_Repeat 31419 31550 52 + . . scaffold1070 TRF Tandem_Repeat 35298 35430 92 + . . scaffold1070 TRF Tandem_Repeat 39017 39305 506 + . . scaffold1070 GLEAN mRNA 41347 44233 1 - . ID=CGI_10004516; scaffold1070 GLEAN promoter 44234 45233 1 - . ID=CGI_10004516; scaffold1070 TRF Tandem_Repeat 46469 47064 640 + . . scaffold1070 GLEAN mRNA 47789 51698 1 - . ID=CGI_10004517; scaffold1070 GLEAN promoter 51699 52698 1 - . ID=CGI_10004517; scaffold1070 GLEAN mRNA 56909 64046 1 - . ID=CGI_10004518; scaffold1070 TRF Tandem_Repeat 57572 57611 57 + . . scaffold1070 TRF Tandem_Repeat 57574 57608 61 + . . scaffold1070 GLEAN promoter 64047 65046 1 - . ID=CGI_10004518; scaffold1070 GLEAN mRNA 66162 70918 0.999999 - . ID=CGI_10004519; scaffold1070 TRF Tandem_Repeat 70223 70280 73 + . . scaffold1070 TRF Tandem_Repeat 70223 70280 73 + . . scaffold1070 TRF Tandem_Repeat 70235 70280 65 + . . scaffold1070 GLEAN promoter 70919 71918 0.999999 - . ID=CGI_10004519; scaffold1070 GLEAN promoter 81861 82860 0.999676 + . ID=CGI_10004520; scaffold1070 GLEAN mRNA 82861 86328 0.999676 + . ID=CGI_10004520; scaffold1070 GLEAN mRNA 87834 98509 0.499838 - . ID=CGI_10004521; scaffold1070 GLEAN promoter 90038 91037 0.999922 + . ID=CGI_10004522; scaffold1070 TRF Tandem_Repeat 90390 90447 107 + . . scaffold1070 GLEAN mRNA 91038 94070 0.999922 + . ID=CGI_10004522; scaffold1070 WUBlastX LINE_CR1 95756 96745 141 - . . scaffold1070 WUBlastX LINE_L2 95927 96769 233 - . . scaffold1070 WUBlastX LINE_L2 96873 96944 23 - . . scaffold1070 GLEAN promoter 98510 99509 0.499838 - . ID=CGI_10004521; scaffold1070 TRF Tandem_Repeat 101731 101797 89 + . . scaffold1072 TRF Tandem_Repeat 6185 6219 52 + . . scaffold1072 TRF Tandem_Repeat 10821 11616 839 + . . scaffold1072 WUBlastX LINE_L1-Tx1 14639 16252 380 + . . scaffold1072 WUBlastX LINE_L1-Tx1 16233 16748 394 + . . scaffold1072 WUBlastX LINE_I 16248 16877 45 + . . scaffold1072 WUBlastX LINE_L1 17076 17408 90 + . . scaffold1072 WUBlastX LINE_I 17103 17468 42 + . . scaffold1072 TRF Tandem_Repeat 18542 19198 812 + . . scaffold1072 TRF Tandem_Repeat 24292 24405 97 + . . scaffold1073 WUBlastX LTR_Gypsy 5 334 61 - . . scaffold1074 GLEAN mRNA 7193 7732 1 - . ID=CGI_10000670; scaffold1074 GLEAN promoter 7733 8389 1 - . ID=CGI_10000670; scaffold1075 TRF Tandem_Repeat 186 281 99 + . . scaffold1075 TRF Tandem_Repeat 1789 2414 1216 + . . scaffold1075 TRF Tandem_Repeat 19017 19767 929 + . . scaffold1075 TRF Tandem_Repeat 21453 21478 52 + . . scaffold1075 TRF Tandem_Repeat 21478 21506 58 + . . scaffold1075 WUBlastX DNA_Sola 22330 22845 86 - . . scaffold1075 WUBlastX DNA_Sola 22420 22893 102 - . . scaffold1075 WUBlastX DNA_Sola 22989 24050 40 - . . scaffold1075 TRF Tandem_Repeat 35542 36298 957 + . . scaffold1075 TRF Tandem_Repeat 43352 43378 54 + . . scaffold1075 WUBlastX DNA_Academ 50400 50585 30 - . . scaffold1075 WUBlastX DNA_Academ 50694 50906 22 - . . scaffold1075 TRF Tandem_Repeat 60054 60106 79 + . . scaffold1075 TRF Tandem_Repeat 76948 77608 903 + . . scaffold1075 TRF Tandem_Repeat 78415 78462 87 + . . scaffold1075 TRF Tandem_Repeat 79889 79918 53 + . . scaffold1075 TRF Tandem_Repeat 85367 85429 81 + . . scaffold1075 TRF Tandem_Repeat 85383 85427 58 + . . scaffold1075 TRF Tandem_Repeat 90817 90850 68 + . . scaffold1075 TRF Tandem_Repeat 91378 91402 50 + . . scaffold1075 TRF Tandem_Repeat 92813 92850 67 + . . scaffold1075 TRF Tandem_Repeat 92930 93158 57 + . . scaffold1075 TRF Tandem_Repeat 92967 93174 132 + . . scaffold1075 TRF Tandem_Repeat 92989 93084 71 + . . scaffold1075 TRF Tandem_Repeat 93008 93093 56 + . . scaffold1075 TRF Tandem_Repeat 101933 101962 60 + . . scaffold1075 TRF Tandem_Repeat 103278 103331 108 + . . scaffold1075 TRF Tandem_Repeat 104333 104362 60 + . . scaffold1075 TRF Tandem_Repeat 104360 104394 70 + . . scaffold1075 GLEAN mRNA 105410 106000 0.717913 - . ID=CGI_10005834; scaffold1075 GLEAN promoter 106001 107000 0.717913 - . ID=CGI_10005834; scaffold1075 GLEAN mRNA 106080 108056 0.999891 - . ID=CGI_10005835; scaffold1075 GLEAN promoter 108057 109056 0.999891 - . ID=CGI_10005835; scaffold1075 TRF Tandem_Repeat 126562 126700 95 + . . scaffold1075 TRF Tandem_Repeat 126769 127002 139 + . . scaffold1075 WUBlastX LTR_Pao 129175 129258 58 - . . scaffold1075 WUBlastX LTR_Pao 129178 129366 55 - . . scaffold1075 WUBlastX LTR_Pao 129354 129743 66 - . . scaffold1075 WUBlastX LTR_Pao 129420 129731 101 - . . scaffold1075 WUBlastX LTR_Pao 129740 129991 170 - . . scaffold1075 WUBlastX LTR_Pao 129740 130096 101 - . . scaffold1075 WUBlastX LTR_Pao 130050 130115 35 - . . scaffold1075 WUBlastX LTR_Pao 134418 134504 24 - . . scaffold1075 WUBlastX LTR_Pao 135160 135414 102 - . . scaffold1075 WUBlastX LTR_Pao 135208 135729 122 - . . scaffold1075 WUBlastX LTR_Pao 135229 135450 160 - . . scaffold1075 TRF Tandem_Repeat 137788 137839 104 + . . scaffold1075 TRF Tandem_Repeat 137857 137882 52 + . . scaffold1077 GLEAN mRNA 275 658 1 - . ID=CGI_10017821; scaffold1077 GLEAN promoter 659 1658 1 - . ID=CGI_10017821; scaffold1077 WUBlastX DNA_hAT 1101 1433 23 - . . scaffold1077 GLEAN promoter 38618 39617 0.999998 + . ID=CGI_10017822; scaffold1077 GLEAN mRNA 39618 44455 0.999998 + . ID=CGI_10017822; scaffold1077 TRF Tandem_Repeat 47440 47478 78 + . . scaffold1077 TRF Tandem_Repeat 51496 51528 66 + . . scaffold1077 TRF Tandem_Repeat 51528 51588 52 + . . scaffold1077 TRF Tandem_Repeat 54883 54928 92 + . . scaffold1077 GLEAN promoter 55025 56024 1 + . ID=CGI_10017823; scaffold1077 GLEAN mRNA 56025 58108 1 + . ID=CGI_10017823; scaffold1077 TRF Tandem_Repeat 66668 66716 80 + . . scaffold1077 TRF Tandem_Repeat 75683 76354 690 + . . scaffold1077 WUBlastX LINE_RTE-X 81431 81766 47 + . . scaffold1077 WUBlastX LINE_L2 91320 91916 140 - . . scaffold1077 TRF Tandem_Repeat 100466 100676 171 + . . scaffold1077 TRF Tandem_Repeat 100468 100671 234 + . . scaffold1077 TRF Tandem_Repeat 100675 100908 243 + . . scaffold1077 TRF Tandem_Repeat 105937 105976 80 + . . scaffold1077 GLEAN promoter 107568 108567 0.972659 + . ID=CGI_10017824; scaffold1077 GLEAN mRNA 108568 122039 0.972659 + . ID=CGI_10017824; scaffold1077 TRF Tandem_Repeat 111959 112081 80 + . . scaffold1077 TRF Tandem_Repeat 111975 112097 176 + . . scaffold1077 TRF Tandem_Repeat 113651 113681 53 + . . scaffold1077 TRF Tandem_Repeat 115355 115535 265 + . . scaffold1077 TRF Tandem_Repeat 119534 119609 116 + . . scaffold1077 WUBlastX LINE_CR1-L2 124559 124906 63 + . . scaffold1077 WUBlastX LINE_L2 124619 124924 63 + . . scaffold1077 WUBlastX LINE_CR1-L2 124652 124897 76 + . . scaffold1077 TRF Tandem_Repeat 132305 132358 108 + . . scaffold1077 GLEAN mRNA 137781 139249 0.997251 - . ID=CGI_10017825; scaffold1077 GLEAN promoter 139250 140249 0.997251 - . ID=CGI_10017825; scaffold1077 WUBlastX LINE_L2 144015 144413 66 + . . scaffold1077 WUBlastX LINE_L2 144114 144413 141 + . . scaffold1077 TRF Tandem_Repeat 144656 144682 54 + . . scaffold1077 TRF Tandem_Repeat 145979 146426 475 + . . scaffold1077 TRF Tandem_Repeat 149646 149701 80 + . . scaffold1077 WUBlastX LINE_Penelope 153900 155210 199 - . . scaffold1077 WUBlastX LINE_Penelope 153945 155018 321 - . . scaffold1077 TRF Tandem_Repeat 155487 155517 53 + . . scaffold1077 TRF Tandem_Repeat 166981 167020 55 + . . scaffold1077 WUBlastX LTR_Ngaro 167095 167490 136 + . . scaffold1077 WUBlastX LTR_Ngaro 167753 168076 176 + . . scaffold1077 WUBlastX LTR_Ngaro 168079 168372 34 + . . scaffold1077 WUBlastX LTR_Ngaro 168159 168257 48 + . . scaffold1077 WUBlastX LTR_Ngaro 169028 169405 219 + . . scaffold1077 WUBlastX LTR_Ngaro 169043 169507 91 + . . scaffold1077 WUBlastX LTR_Ngaro 170347 170688 174 + . . scaffold1077 WUBlastX LTR_Ngaro 170669 170920 147 + . . scaffold1077 WUBlastX LTR_Ngaro 170824 171834 237 + . . scaffold1077 WUBlastX LTR_DIRS 171640 171879 29 + . . scaffold1077 TRF Tandem_Repeat 174213 175534 1822 + . . scaffold1077 GLEAN mRNA 176257 178389 0.988652 - . ID=CGI_10017826; scaffold1077 GLEAN promoter 178390 179389 0.988652 - . ID=CGI_10017826; scaffold1077 WUBlastX LINE_L1-Tx1 178742 179098 91 + . . scaffold1077 WUBlastX LINE_L1-Tx1 178811 179854 145 + . . scaffold1077 TRF Tandem_Repeat 181027 181070 88 + . . scaffold1077 TRF Tandem_Repeat 181219 181280 115 + . . scaffold1077 TRF Tandem_Repeat 189160 189208 98 + . . scaffold1077 TRF Tandem_Repeat 190013 190064 81 + . . scaffold1077 TRF Tandem_Repeat 193650 193715 123 + . . scaffold1077 WUBlastX LTR_Pao 195530 196135 162 - . . scaffold1077 WUBlastX LTR_Pao 195716 196135 165 - . . scaffold1077 WUBlastX LTR_Pao 196153 198069 1000 - . . scaffold1077 WUBlastX LTR_Pao 197362 198204 491 - . . scaffold1077 WUBlastX LTR_Pao 198218 199081 646 - . . scaffold1077 WUBlastX LTR_Pao 198218 199315 641 - . . scaffold1077 TRF Tandem_Repeat 207497 207531 54 + . . scaffold1077 TRF Tandem_Repeat 209606 209658 56 + . . scaffold1077 TRF Tandem_Repeat 213068 213110 68 + . . scaffold1077 TRF Tandem_Repeat 214999 215178 125 + . . scaffold1077 TRF Tandem_Repeat 214999 215180 97 + . . scaffold1077 TRF Tandem_Repeat 214999 215180 97 + . . scaffold1077 WUBlastX LTR_Gypsy 215804 216961 892 + . . scaffold1077 WUBlastX LTR_Gypsy 216928 217656 382 + . . scaffold1077 TRF Tandem_Repeat 221113 221276 195 + . . scaffold1077 TRF Tandem_Repeat 221392 221823 169 + . . scaffold1077 TRF Tandem_Repeat 221396 221729 200 + . . scaffold1077 TRF Tandem_Repeat 224615 225171 961 + . . scaffold1077 GLEAN mRNA 225533 227596 0.789459 - . ID=CGI_10017827; scaffold1077 GLEAN promoter 227597 228596 0.789459 - . ID=CGI_10017827; scaffold1077 TRF Tandem_Repeat 228040 228115 90 + . . scaffold1077 GLEAN promoter 230968 231967 0.602406 + . ID=CGI_10017828; scaffold1077 GLEAN mRNA 231968 232363 0.602406 + . ID=CGI_10017828; scaffold1077 WUBlastX DNA_hAT-Tip100 286675 286797 36 - . . scaffold1077 WUBlastX DNA_hAT-Tip100 286927 287112 72 - . . scaffold1077 WUBlastX DNA_hAT-Tip100 287618 287671 30 - . . scaffold1077 TRF Tandem_Repeat 292487 292513 54 + . . scaffold1077 TRF Tandem_Repeat 297339 297368 60 + . . scaffold1077 WUBlastX LINE_L1-Tx1 297752 297970 38 + . . scaffold1077 WUBlastX LINE_L1-Tx1 297758 297937 40 + . . scaffold1077 WUBlastX LINE_L1-Tx1 297758 297901 44 + . . scaffold1077 WUBlastX LINE_L1 297987 298685 95 + . . scaffold1077 TRF Tandem_Repeat 310398 310439 59 + . . scaffold1077 TRF Tandem_Repeat 312083 312133 102 + . . scaffold1077 TRF Tandem_Repeat 314373 314420 51 + . . scaffold1077 TRF Tandem_Repeat 318212 318340 117 + . . scaffold1077 WUBlastX DNA_NOF 318535 318675 46 + . . scaffold1077 WUBlastX DNA_TcMar-Tc1 320441 320647 79 + . . scaffold1077 WUBlastX RC_Helitron 335916 336170 99 - . . scaffold1077 WUBlastX RC_Helitron 335925 336248 96 - . . scaffold1077 WUBlastX DNA_Maverick 337626 337835 42 - . . scaffold1077 WUBlastX DNA_Maverick 337849 338037 45 - . . scaffold1077 GLEAN promoter 343081 344080 0.82291 + . ID=CGI_10017829; scaffold1077 GLEAN mRNA 344081 378528 0.82291 + . ID=CGI_10017829; scaffold1077 WUBlastX LTR_Gypsy 347420 351349 2705 + . . scaffold1077 TRF Tandem_Repeat 360264 360303 59 + . . scaffold1077 WUBlastX DNA_Kolobok-IS4 365091 365366 101 - . . scaffold1077 GLEAN promoter 386371 387370 0.296665 + . ID=CGI_10017830; scaffold1077 GLEAN mRNA 387371 414102 0.296665 + . ID=CGI_10017830; scaffold1077 TRF Tandem_Repeat 390209 390254 92 + . . scaffold1077 TRF Tandem_Repeat 392066 392090 50 + . . scaffold1077 TRF Tandem_Repeat 393723 393768 65 + . . scaffold1077 WUBlastX DNA_NOF 464573 464665 37 - . . scaffold1077 WUBlastX LTR_Gypsy 465203 465370 27 - . . scaffold1077 WUBlastX LTR_Gypsy-Cigr 465630 467402 466 - . . scaffold1077 WUBlastX LTR_Gypsy 465897 467201 748 - . . scaffold1077 WUBlastX LTR_Gypsy 467331 467774 53 - . . scaffold1077 WUBlastX LTR_Gypsy 467490 467774 87 - . . scaffold1077 WUBlastX LTR_Gypsy 467559 467774 165 - . . scaffold1077 TRF Tandem_Repeat 481819 481897 63 + . . scaffold1077 TRF Tandem_Repeat 483258 483292 52 + . . scaffold1077 WUBlastX LTR_Gypsy 484929 484970 20 - . . scaffold1077 WUBlastX LTR_Pao 485384 485584 46 - . . scaffold1077 WUBlastX LTR_Pao 485408 485539 50 - . . scaffold1077 WUBlastX LTR_Gypsy 485564 487165 427 - . . scaffold1077 WUBlastX LTR_Gypsy 485849 487135 725 - . . scaffold1077 WUBlastX LTR_Gypsy-Cigr 485939 487354 506 - . . scaffold1077 WUBlastX LTR_ERV1 487295 487366 23 - . . scaffold1077 WUBlastX LTR_Gypsy 487477 489702 948 - . . scaffold1077 WUBlastX LTR_Gypsy 487609 488979 996 - . . scaffold1077 WUBlastX LTR_Gypsy 489181 489888 54 - . . scaffold1077 WUBlastX LTR_Gypsy 489370 490047 30 - . . scaffold1077 WUBlastX LTR_Gypsy 489550 489759 59 - . . scaffold1077 WUBlastX LTR_ERV1 490171 490521 67 - . . scaffold1077 WUBlastX LTR_Gypsy 490240 490989 35 - . . scaffold1077 GLEAN mRNA 491762 492628 0.602831 - . ID=CGI_10017831; scaffold1077 GLEAN promoter 492629 493628 0.602831 - . ID=CGI_10017831; scaffold1077 WUBlastX DNA_Maverick 499112 499156 36 - . . scaffold1077 WUBlastX DNA_Maverick 499158 499583 142 - . . scaffold1077 WUBlastX DNA_Maverick 499224 499583 167 - . . scaffold1077 WUBlastX DNA_Maverick 499576 499770 111 - . . scaffold1077 WUBlastX DNA_Maverick 499582 499839 100 - . . scaffold1077 WUBlastX DNA_Harbinger 500148 500357 55 - . . scaffold1077 WUBlastX DNA_Harbinger 500217 500432 34 - . . scaffold1077 WUBlastX DNA_Harbinger 500472 500702 62 - . . scaffold1077 WUBlastX DNA_Harbinger 500710 500784 24 - . . scaffold1077 WUBlastX DNA_Harbinger 501012 501140 60 - . . scaffold1077 WUBlastX DNA_Harbinger 501012 501191 42 - . . scaffold1077 WUBlastX DNA_Harbinger 501018 501122 91 - . . scaffold1077 WUBlastX LINE_L1-Tx1 502647 503837 282 + . . scaffold1077 TRF Tandem_Repeat 504071 504103 66 + . . scaffold1077 TRF Tandem_Repeat 504241 504290 73 + . . scaffold1077 WUBlastX DNA_Maverick 506946 507377 203 - . . scaffold1077 WUBlastX DNA_Maverick 507373 507624 157 - . . scaffold1077 WUBlastX DNA_Harbinger 507971 508162 23 - . . scaffold1077 WUBlastX DNA_Harbinger 508286 508399 34 - . . scaffold1077 WUBlastX DNA_Harbinger 508304 508402 34 - . . scaffold1077 WUBlastX DNA_Harbinger 508322 508402 43 - . . scaffold1078 GLEAN promoter 1 486 0.999676 + . ID=CGI_10004750; scaffold1078 GLEAN mRNA 487 3142 0.999676 + . ID=CGI_10004750; scaffold1078 GLEAN promoter 7595 8594 0.467606 + . ID=CGI_10004751; scaffold1078 TRF Tandem_Repeat 8252 8576 102 + . . scaffold1078 TRF Tandem_Repeat 8252 8571 292 + . . scaffold1078 TRF Tandem_Repeat 8288 8571 295 + . . scaffold1078 TRF Tandem_Repeat 8418 8570 171 + . . scaffold1078 GLEAN mRNA 8595 21090 0.467606 + . ID=CGI_10004751; scaffold1078 TRF Tandem_Repeat 20466 20583 141 + . . scaffold1078 WUBlastX DNA_TcMar-Marin 27957 28109 57 - . . scaffold1078 GLEAN promoter 32224 33223 0.865609 + . ID=CGI_10004752; scaffold1078 GLEAN mRNA 33224 46177 0.865609 + . ID=CGI_10004752; scaffold1078 TRF Tandem_Repeat 35804 35845 84 + . . scaffold1078 TRF Tandem_Repeat 41859 41926 66 + . . scaffold1078 TRF Tandem_Repeat 46194 46238 90 + . . scaffold1078 GLEAN promoter 49686 50685 1 + . ID=CGI_10004753; scaffold1078 TRF Tandem_Repeat 50473 50513 82 + . . scaffold1078 GLEAN mRNA 50686 51423 1 + . ID=CGI_10004753; scaffold1078 WUBlastX LINE_Penelope 78376 79029 126 - . . scaffold1078 GLEAN mRNA 100744 104528 0.999495 - . ID=CGI_10004754; scaffold1078 GLEAN promoter 104529 105528 0.999495 - . ID=CGI_10004754; scaffold1078 TRF Tandem_Repeat 106877 107036 149 + . . scaffold1080 GLEAN mRNA 1308 26416 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 7519 7558 71 + . . scaffold1080 TRF Tandem_Repeat 7558 7588 62 + . . scaffold1080 TRF Tandem_Repeat 9004 9070 71 + . . scaffold1080 TRF Tandem_Repeat 12155 12206 77 + . . scaffold1080 TRF Tandem_Repeat 23061 23104 63 + . . scaffold1080 TRF Tandem_Repeat 23071 23100 53 + . . scaffold1080 TRF Tandem_Repeat 24884 25116 389 + . . scaffold1080 TRF Tandem_Repeat 24884 25116 339 + . . scaffold1080 TRF Tandem_Repeat 25969 26221 359 + . . scaffold1080 GLEAN promoter 26417 27416 0.637113 - . ID=CGI_10012664; scaffold1080 TRF Tandem_Repeat 29706 30249 772 + . . scaffold1080 GLEAN mRNA 31454 31813 0.639927 - . ID=CGI_10012665; scaffold1080 GLEAN promoter 31814 32813 0.639927 - . ID=CGI_10012665; scaffold1080 GLEAN mRNA 33566 48343 1 - . ID=CGI_10012666; scaffold1080 GLEAN promoter 48344 49343 1 - . ID=CGI_10012666; scaffold1080 GLEAN mRNA 49623 64123 1 - . ID=CGI_10012667; scaffold1080 GLEAN promoter 64124 65123 1 - . ID=CGI_10012667; scaffold1080 TRF Tandem_Repeat 65215 65259 90 + . . scaffold1080 TRF Tandem_Repeat 66835 66864 60 + . . scaffold1080 GLEAN promoter 70203 71202 0.619798 + . ID=CGI_10012668; scaffold1080 GLEAN mRNA 71203 80484 0.619798 + . ID=CGI_10012668; scaffold1080 TRF Tandem_Repeat 77391 77732 276 + . . scaffold1080 TRF Tandem_Repeat 77970 78028 118 + . . scaffold1080 GLEAN mRNA 82401 82703 1 - . ID=CGI_10012669; scaffold1080 GLEAN promoter 82704 83703 1 - . ID=CGI_10012669; scaffold1080 GLEAN mRNA 86921 97875 0.636854 - . ID=CGI_10012670; scaffold1080 TRF Tandem_Repeat 89510 89559 91 + . . scaffold1080 GLEAN promoter 97876 98875 0.636854 - . ID=CGI_10012670; scaffold1080 WUBlastX LINE_L2 103548 103886 44 - . . scaffold1080 GLEAN promoter 104922 105921 1 + . ID=CGI_10012671; scaffold1080 GLEAN mRNA 105922 121433 1 + . ID=CGI_10012671; scaffold1080 TRF Tandem_Repeat 112107 112172 80 + . . scaffold1080 TRF Tandem_Repeat 112107 112172 98 + . . scaffold1080 TRF Tandem_Repeat 117651 117832 292 + . . scaffold1080 TRF Tandem_Repeat 117651 117840 371 + . . scaffold1080 TRF Tandem_Repeat 117659 117840 291 + . . scaffold1080 TRF Tandem_Repeat 118269 118646 575 + . . scaffold1080 TRF Tandem_Repeat 120122 120453 391 + . . scaffold1080 GLEAN mRNA 126228 128970 0.730676 - . ID=CGI_10012672; scaffold1080 GLEAN promoter 128971 129970 0.730676 - . ID=CGI_10012672; scaffold1080 TRF Tandem_Repeat 132158 132372 161 + . . scaffold1080 TRF Tandem_Repeat 134128 134175 96 + . . scaffold1080 GLEAN promoter 147571 148570 0.995421 + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 148011 148415 26 + . . scaffold1080 WUBlastX DNA_TcMar-Tc2 148436 148651 40 + . . scaffold1080 GLEAN mRNA 148571 152000 0.995421 + . ID=CGI_10012673; scaffold1080 WUBlastX DNA_TcMar-Tc2 149001 149237 31 + . . scaffold1080 WUBlastX DNA_TcMar-Tc2 149064 149240 82 + . . scaffold1080 GLEAN promoter 151261 152260 0.618241 + . ID=CGI_10012674; scaffold1080 GLEAN mRNA 152261 152428 0.618241 + . ID=CGI_10012674; scaffold1080 WUBlastX DNA_En-Spm 171065 171310 34 - . . scaffold1080 WUBlastX DNA_En-Spm 171191 171313 38 - . . scaffold1080 TRF Tandem_Repeat 201400 201452 106 + . . scaffold1080 TRF Tandem_Repeat 204758 204797 80 + . . scaffold1080 TRF Tandem_Repeat 214044 214104 68 + . . scaffold1080 TRF Tandem_Repeat 214044 214086 59 + . . scaffold1080 TRF Tandem_Repeat 214331 214355 50 + . . scaffold1080 WUBlastX DNA_IS4EU 219636 219812 64 + . . scaffold1080 WUBlastX DNA_IS4EU 219642 219764 68 + . . scaffold1080 TRF Tandem_Repeat 220580 220920 558 + . . scaffold1080 GLEAN promoter 224005 225004 0.990831 + . ID=CGI_10012675; scaffold1080 GLEAN promoter 224651 225650 0.999999 + . ID=CGI_10012676; scaffold1080 GLEAN mRNA 225005 225628 0.990831 + . ID=CGI_10012675; scaffold1080 GLEAN mRNA 225651 226411 0.999999 + . ID=CGI_10012676; scaffold1080 TRF Tandem_Repeat 230319 230352 68 + . . scaffold1080 WUBlastX DNA_IS4EU 247037 247405 88 + . . scaffold1080 WUBlastX DNA_IS4EU 247127 247402 121 + . . scaffold1080 GLEAN mRNA 255570 275608 0.591325 - . ID=CGI_10012678; scaffold1080 WUBlastX DNA_En-Spm 262091 263065 138 - . . scaffold1080 WUBlastX DNA_En-Spm 262475 263020 169 - . . scaffold1080 WUBlastX DNA_En-Spm 263131 264048 255 - . . scaffold1080 WUBlastX DNA_En-Spm 263365 264198 25 - . . scaffold1080 WUBlastX DNA_En-Spm 264207 264248 28 - . . scaffold1080 GLEAN promoter 275609 276608 0.591325 - . ID=CGI_10012678; scaffold1080 GLEAN mRNA 279743 291916 0.693138 - . ID=CGI_10012679; scaffold1080 TRF Tandem_Repeat 280054 281090 1723 + . . scaffold1080 TRF Tandem_Repeat 282930 283235 513 + . . scaffold1080 TRF Tandem_Repeat 283256 284111 416 + . . scaffold1080 TRF Tandem_Repeat 283303 283742 283 + . . scaffold1080 TRF Tandem_Repeat 283840 283909 60 + . . scaffold1080 TRF Tandem_Repeat 283894 284135 322 + . . scaffold1080 TRF Tandem_Repeat 286438 286488 84 + . . scaffold1080 GLEAN promoter 291917 292916 0.693138 - . ID=CGI_10012679; scaffold1080 GLEAN mRNA 304734 334974 0.992412 - . ID=CGI_10012680; scaffold1080 TRF Tandem_Repeat 306185 306303 127 + . . scaffold1080 TRF Tandem_Repeat 307818 308057 223 + . . scaffold1080 TRF Tandem_Repeat 307825 308057 231 + . . scaffold1080 TRF Tandem_Repeat 325113 325161 98 + . . scaffold1080 TRF Tandem_Repeat 334472 334641 159 + . . scaffold1080 TRF Tandem_Repeat 334721 334761 64 + . . scaffold1080 GLEAN promoter 334975 335158 0.992412 - . ID=CGI_10012680; scaffold1081 GLEAN mRNA 60 28741 0.99993 - . ID=CGI_10007682; scaffold1081 GLEAN promoter 28742 29741 0.99993 - . ID=CGI_10007682; scaffold1081 TRF Tandem_Repeat 36415 36458 61 + . . scaffold1081 TRF Tandem_Repeat 36785 36832 87 + . . scaffold1081 WUBlastX LTR_Ngaro 43505 43879 166 - . . scaffold1081 WUBlastX LTR_Ngaro 43511 43792 168 - . . scaffold1081 WUBlastX LTR_Gypsy 50807 50872 26 + . . scaffold1081 WUBlastX LTR_Gypsy 50871 51185 142 + . . scaffold1081 WUBlastX LTR_Gypsy 50874 51242 47 + . . scaffold1081 WUBlastX LTR_Gypsy-Cigr 51236 51316 25 + . . scaffold1081 WUBlastX LTR_Gypsy 51400 51831 71 + . . scaffold1081 WUBlastX LTR_Gypsy 51741 52196 295 + . . scaffold1081 WUBlastX LTR_Gypsy 51831 52352 174 + . . scaffold1081 WUBlastX LTR_Gypsy 51831 52199 330 + . . scaffold1081 WUBlastX LTR_Gypsy 52304 52618 142 + . . scaffold1081 WUBlastX LTR_Gypsy 52307 52675 47 + . . scaffold1081 WUBlastX LTR_Gypsy-Cigr 52669 52749 25 + . . scaffold1081 WUBlastX LTR_Gypsy 52833 53264 71 + . . scaffold1081 WUBlastX LTR_Gypsy 53174 53629 295 + . . scaffold1081 WUBlastX LTR_Gypsy 53264 53632 330 + . . scaffold1081 WUBlastX LTR_Gypsy 53619 53768 25 + . . scaffold1081 WUBlastX LTR_Gypsy 53658 53771 64 + . . scaffold1081 WUBlastX LTR_Gypsy 53661 53936 38 + . . scaffold1081 WUBlastX LTR_Gypsy 53664 53804 41 + . . scaffold1081 WUBlastX LTR_Gypsy 54524 54613 21 + . . scaffold1081 WUBlastX LTR_Gypsy 54527 54598 23 + . . scaffold1081 WUBlastX DNA_Maverick 61466 61747 102 - . . scaffold1081 WUBlastX DNA_Maverick 62260 62610 33 - . . scaffold1081 WUBlastX DNA_Maverick 62314 62691 92 - . . scaffold1081 WUBlastX DNA_Maverick 62727 62855 28 - . . scaffold1081 WUBlastX DNA_Maverick 62801 63034 38 - . . scaffold1081 WUBlastX DNA_Maverick 62861 63034 59 - . . scaffold1081 WUBlastX DNA_Maverick 63028 63153 36 - . . scaffold1081 WUBlastX DNA_Maverick 63132 63533 87 - . . scaffold1081 WUBlastX DNA_Maverick 63228 63968 73 - . . scaffold1081 WUBlastX DNA_Maverick 63231 63512 103 - . . scaffold1081 WUBlastX DNA_Maverick 63622 63873 96 - . . scaffold1081 WUBlastX DNA_Maverick 64797 65105 73 - . . scaffold1081 GLEAN promoter 67446 68445 0.999493 + . ID=CGI_10007683; scaffold1081 GLEAN mRNA 68446 104668 0.999493 + . ID=CGI_10007683; scaffold1081 TRF Tandem_Repeat 90962 91000 51 + . . scaffold1081 TRF Tandem_Repeat 90966 91016 50 + . . scaffold1081 GLEAN promoter 103817 104816 0.989219 + . ID=CGI_10007684; scaffold1081 GLEAN mRNA 104817 115029 0.989219 + . ID=CGI_10007684; scaffold1081 TRF Tandem_Repeat 105110 105166 80 + . . scaffold1081 WUBlastX LTR_DIRS 140405 140797 237 + . . scaffold1081 WUBlastX LTR_DIRS 140864 141538 461 + . . scaffold1081 WUBlastX LTR_DIRS 141531 141869 255 + . . scaffold1081 GLEAN promoter 145825 146824 0.999336 + . ID=CGI_10007685; scaffold1081 GLEAN mRNA 146825 150443 0.999336 + . ID=CGI_10007685; scaffold1081 GLEAN promoter 150167 151166 0.603491 + . ID=CGI_10007686; scaffold1081 GLEAN mRNA 151167 168373 0.603491 + . ID=CGI_10007686; scaffold1081 WUBlastX LTR_Gypsy 164298 164504 44 + . . scaffold1081 WUBlastX LTR_Gypsy 164346 164606 33 + . . scaffold1081 WUBlastX LTR_Gypsy 164358 164564 50 + . . scaffold1081 WUBlastX LINE_Penelope 165703 166212 44 + . . scaffold1081 TRF Tandem_Repeat 184142 184230 58 + . . scaffold1082 GLEAN promoter 1 81 1 + . ID=CGI_10000421; scaffold1082 GLEAN mRNA 82 479 1 + . ID=CGI_10000421; scaffold1083 GLEAN promoter 8851 9850 1 + . ID=CGI_10016517; scaffold1083 GLEAN mRNA 9851 12194 1 + . ID=CGI_10016517; scaffold1083 GLEAN promoter 15607 16606 1 + . ID=CGI_10016518; scaffold1083 GLEAN mRNA 16607 19108 1 + . ID=CGI_10016518; scaffold1083 GLEAN mRNA 22185 36009 1 - . ID=CGI_10016519; scaffold1083 GLEAN promoter 36010 37009 1 - . ID=CGI_10016519; scaffold1083 TRF Tandem_Repeat 36085 36135 102 + . . scaffold1083 GLEAN mRNA 36861 38258 0.536102 - . ID=CGI_10016520; scaffold1083 GLEAN promoter 38259 39258 0.536102 - . ID=CGI_10016520; scaffold1083 GLEAN promoter 38900 39899 1 + . ID=CGI_10016521; scaffold1083 GLEAN mRNA 39900 40401 1 + . ID=CGI_10016521; scaffold1083 GLEAN mRNA 46682 53883 0.999676 - . ID=CGI_10016522; scaffold1083 GLEAN promoter 53884 54883 0.999676 - . ID=CGI_10016522; scaffold1083 GLEAN promoter 60710 61709 0.999573 + . ID=CGI_10016523; scaffold1083 GLEAN mRNA 61710 80722 0.999573 + . ID=CGI_10016523; scaffold1083 GLEAN mRNA 86495 101075 0.871452 - . ID=CGI_10016524; scaffold1083 GLEAN promoter 101076 102075 0.871452 - . ID=CGI_10016524; scaffold1083 TRF Tandem_Repeat 103280 103308 58 + . . scaffold1083 GLEAN promoter 104438 105437 0.996608 + . ID=CGI_10016525; scaffold1083 TRF Tandem_Repeat 104576 104623 89 + . . scaffold1083 GLEAN mRNA 105438 111865 0.996608 + . ID=CGI_10016525; scaffold1083 TRF Tandem_Repeat 106722 107800 1509 + . . scaffold1083 GLEAN mRNA 113331 117786 0.734569 - . ID=CGI_10016526; scaffold1083 TRF Tandem_Repeat 115907 115937 55 + . . scaffold1083 GLEAN promoter 117787 118786 0.734569 - . ID=CGI_10016526; scaffold1083 GLEAN mRNA 123062 132804 0.573492 - . ID=CGI_10016527; scaffold1083 TRF Tandem_Repeat 130895 130957 103 + . . scaffold1083 TRF Tandem_Repeat 131175 131228 108 + . . scaffold1083 GLEAN promoter 132805 133804 0.573492 - . ID=CGI_10016527; scaffold1083 TRF Tandem_Repeat 138125 138169 54 + . . scaffold1083 WUBlastX LINE_L2 141753 142160 60 + . . scaffold1083 WUBlastX LINE_CR1 141828 142391 69 + . . scaffold1083 WUBlastX LINE_RTE-X 141936 145199 1018 + . . scaffold1083 TRF Tandem_Repeat 145360 145419 57 + . . scaffold1083 GLEAN promoter 146246 147245 1 + . ID=CGI_10016528; scaffold1083 GLEAN mRNA 147246 159934 1 + . ID=CGI_10016528; scaffold1083 GLEAN mRNA 165337 167184 1 - . ID=CGI_10016529; scaffold1083 GLEAN promoter 167185 168184 1 - . ID=CGI_10016529; scaffold1083 GLEAN promoter 169100 170099 1 + . ID=CGI_10016530; scaffold1083 GLEAN mRNA 170100 187854 1 + . ID=CGI_10016530; scaffold1083 GLEAN mRNA 190041 194178 0.994137 - . ID=CGI_10016531; scaffold1083 GLEAN promoter 194179 195178 0.994137 - . ID=CGI_10016531; scaffold1083 GLEAN mRNA 206329 216078 0.999676 - . ID=CGI_10016532; scaffold1083 GLEAN promoter 216079 217078 0.999676 - . ID=CGI_10016532; scaffold1083 TRF Tandem_Repeat 220029 220076 96 + . . scaffold1083 GLEAN promoter 220514 221513 0.999415 + . ID=CGI_10016533; scaffold1083 GLEAN mRNA 221514 224589 0.999415 + . ID=CGI_10016533; scaffold1083 TRF Tandem_Repeat 225840 226027 207 + . . scaffold1083 TRF Tandem_Repeat 225840 225991 139 + . . scaffold1083 TRF Tandem_Repeat 226026 226196 162 + . . scaffold1083 GLEAN promoter 227621 228620 1 + . ID=CGI_10016534; scaffold1083 GLEAN mRNA 228621 231717 1 + . ID=CGI_10016534; scaffold1083 TRF Tandem_Repeat 234632 234671 62 + . . scaffold1083 TRF Tandem_Repeat 244100 244138 78 + . . scaffold1083 TRF Tandem_Repeat 245029 245079 102 + . . scaffold1083 TRF Tandem_Repeat 246736 246778 68 + . . scaffold1083 TRF Tandem_Repeat 247745 247797 106 + . . scaffold1083 TRF Tandem_Repeat 251339 251366 56 + . . scaffold1083 WUBlastX LINE_Penelope 254855 255109 32 - . . scaffold1083 TRF Tandem_Repeat 256581 256610 60 + . . scaffold1083 GLEAN promoter 257713 258712 1 + . ID=CGI_10016535; scaffold1083 GLEAN mRNA 258713 261737 1 + . ID=CGI_10016535; scaffold1083 TRF Tandem_Repeat 259572 259760 99 + . . scaffold1083 TRF Tandem_Repeat 259663 259762 107 + . . scaffold1083 TRF Tandem_Repeat 262361 262392 57 + . . scaffold1083 GLEAN promoter 264142 265141 0.998274 + . ID=CGI_10016536; scaffold1083 GLEAN mRNA 265142 267063 0.998274 + . ID=CGI_10016536; scaffold1083 GLEAN promoter 276261 277260 1 + . ID=CGI_10016537; scaffold1083 GLEAN mRNA 277261 285007 1 + . ID=CGI_10016537; scaffold1083 TRF Tandem_Repeat 282634 282696 108 + . . scaffold1083 GLEAN promoter 286720 287719 0.984679 + . ID=CGI_10016538; scaffold1083 GLEAN mRNA 287720 308080 0.984679 + . ID=CGI_10016538; scaffold1083 TRF Tandem_Repeat 308501 308526 52 + . . scaffold1083 GLEAN promoter 308684 309683 1 + . ID=CGI_10016539; scaffold1083 GLEAN mRNA 309684 319649 1 + . ID=CGI_10016539; scaffold1083 WUBlastX DNA_hAT-Tip100 327250 328767 771 + . . scaffold1083 TRF Tandem_Repeat 333214 333255 59 + . . scaffold1083 GLEAN mRNA 337287 341749 0.90143 - . ID=CGI_10016540; scaffold1083 GLEAN promoter 341750 342749 0.90143 - . ID=CGI_10016540; scaffold1083 TRF Tandem_Repeat 346697 346814 88 + . . scaffold1083 GLEAN mRNA 348188 353173 0.999999 - . ID=CGI_10016541; scaffold1083 TRF Tandem_Repeat 348642 348678 74 + . . scaffold1083 GLEAN promoter 353174 354173 0.999999 - . ID=CGI_10016541; scaffold1083 TRF Tandem_Repeat 355507 355541 63 + . . scaffold1083 TRF Tandem_Repeat 356265 356319 110 + . . scaffold1083 TRF Tandem_Repeat 360248 360287 53 + . . scaffold1083 TRF Tandem_Repeat 361110 361214 68 + . . scaffold1083 TRF Tandem_Repeat 361245 361374 86 + . . scaffold1083 TRF Tandem_Repeat 361491 361586 140 + . . scaffold1083 GLEAN mRNA 362475 365151 1 - . ID=CGI_10016542; scaffold1083 TRF Tandem_Repeat 363820 364168 583 + . . scaffold1083 GLEAN promoter 365152 366151 1 - . ID=CGI_10016542; scaffold1083 GLEAN promoter 367633 368632 1 + . ID=CGI_10016543; scaffold1083 GLEAN mRNA 368633 371856 1 + . ID=CGI_10016543; scaffold1083 GLEAN mRNA 373379 376048 0.998726 - . ID=CGI_10016544; scaffold1083 GLEAN promoter 376049 377048 0.998726 - . ID=CGI_10016544; scaffold1083 TRF Tandem_Repeat 376335 376372 76 + . . scaffold1083 WUBlastX LINE_RTE-X 377417 377716 36 - . . scaffold1083 WUBlastX LINE_RTE-X 377631 378647 485 - . . scaffold1083 WUBlastX LINE_RTE-X 378653 378964 168 - . . scaffold1083 WUBlastX LINE_RTE-X 378883 379725 254 - . . scaffold1083 WUBlastX LINE_RTE-X 378886 379548 271 - . . scaffold1083 WUBlastX LINE_RTE-X 378940 379884 245 - . . scaffold1083 GLEAN promoter 382395 383394 1 + . ID=CGI_10016545; scaffold1083 GLEAN mRNA 383395 393836 1 + . ID=CGI_10016545; scaffold1083 GLEAN mRNA 397301 414333 0.769591 - . ID=CGI_10016546; scaffold1083 GLEAN promoter 414334 415333 0.769591 - . ID=CGI_10016546; scaffold1083 GLEAN mRNA 416660 428480 0.989532 - . ID=CGI_10016547; scaffold1083 TRF Tandem_Repeat 417180 417209 60 + . . scaffold1083 GLEAN promoter 428481 429480 0.989532 - . ID=CGI_10016547; scaffold1083 GLEAN promoter 434837 435836 0.956475 + . ID=CGI_10016548; scaffold1083 GLEAN mRNA 435837 458107 0.956475 + . ID=CGI_10016548; scaffold1083 TRF Tandem_Repeat 445697 445812 81 + . . scaffold1083 TRF Tandem_Repeat 456202 456228 54 + . . scaffold1083 TRF Tandem_Repeat 456226 456275 91 + . . scaffold1083 WUBlastX LTR_Gypsy-Cigr 459333 460331 301 - . . scaffold1083 WUBlastX LTR_Gypsy 459909 460676 71 - . . scaffold1083 WUBlastX LTR_Gypsy 459912 460343 395 - . . scaffold1083 WUBlastX LTR_Gypsy-Cigr 460017 460517 211 - . . scaffold1083 WUBlastX LTR_Gypsy 460779 461261 77 - . . scaffold1083 WUBlastX LTR_Gypsy 460890 461291 373 - . . scaffold1083 WUBlastX LTR_Gypsy-Cigr 460965 461465 211 - . . scaffold1083 WUBlastX LTR_Gypsy 460968 461555 54 - . . scaffold1084 GLEAN promoter 1 110 0.999999 + . ID=CGI_10010073; scaffold1084 GLEAN mRNA 111 18587 0.999999 + . ID=CGI_10010073; scaffold1084 TRF Tandem_Repeat 1368 1492 241 + . . scaffold1084 TRF Tandem_Repeat 15004 15433 746 + . . scaffold1084 GLEAN mRNA 19304 23200 0.584693 - . ID=CGI_10010074; scaffold1084 GLEAN promoter 23201 24200 0.584693 - . ID=CGI_10010074; scaffold1084 TRF Tandem_Repeat 28994 29068 78 + . . scaffold1084 GLEAN promoter 30266 31265 0.801676 + . ID=CGI_10010075; scaffold1084 GLEAN mRNA 31266 40802 0.801676 + . ID=CGI_10010075; scaffold1084 WUBlastX LTR_ERV1 37262 37336 38 + . . scaffold1084 WUBlastX LTR_ERV1 37334 37420 36 + . . scaffold1084 WUBlastX LTR_ERV1 37418 37507 31 + . . scaffold1084 WUBlastX LTR_Copia 37677 37772 25 + . . scaffold1084 GLEAN mRNA 46588 52243 0.999938 - . ID=CGI_10010076; scaffold1084 GLEAN promoter 52244 53243 0.999938 - . ID=CGI_10010076; scaffold1084 TRF Tandem_Repeat 53226 53414 306 + . . scaffold1084 TRF Tandem_Repeat 79994 80133 262 + . . scaffold1084 TRF Tandem_Repeat 81213 81279 80 + . . scaffold1084 TRF Tandem_Repeat 81775 81841 116 + . . scaffold1084 TRF Tandem_Repeat 82020 82095 138 + . . scaffold1084 TRF Tandem_Repeat 88032 88191 112 + . . scaffold1084 TRF Tandem_Repeat 88253 88363 91 + . . scaffold1084 TRF Tandem_Repeat 88463 88556 82 + . . scaffold1084 WUBlastX DNA_Maverick 91675 92145 24 - . . scaffold1084 TRF Tandem_Repeat 94590 94616 54 + . . scaffold1084 TRF Tandem_Repeat 96867 96923 51 + . . scaffold1084 WUBlastX LINE_L1 103991 104029 20 + . . scaffold1084 WUBlastX LINE_RTE-X 104859 105245 118 + . . scaffold1084 WUBlastX LINE_RTE-X 104928 105284 229 + . . scaffold1084 WUBlastX LINE_RTE-BovB 105012 105335 143 + . . scaffold1084 WUBlastX LINE_RTE-X 105337 106485 657 + . . scaffold1084 GLEAN promoter 108078 109077 0.999947 + . ID=CGI_10010077; scaffold1084 GLEAN mRNA 109078 118526 0.999947 + . ID=CGI_10010077; scaffold1084 TRF Tandem_Repeat 109386 109416 62 + . . scaffold1084 TRF Tandem_Repeat 132186 132228 68 + . . scaffold1084 TRF Tandem_Repeat 134532 134581 73 + . . scaffold1084 TRF Tandem_Repeat 141829 141876 55 + . . scaffold1084 GLEAN promoter 142113 143112 0.702333 + . ID=CGI_10010078; scaffold1084 GLEAN mRNA 143113 160475 0.702333 + . ID=CGI_10010078; scaffold1084 WUBlastX LTR_DIRS 147404 148465 67 + . . scaffold1084 WUBlastX LTR_DIRS 147728 148471 174 + . . scaffold1084 WUBlastX LTR_DIRS 148507 148818 186 + . . scaffold1084 TRF Tandem_Repeat 148846 148905 75 + . . scaffold1084 TRF Tandem_Repeat 151298 151348 102 + . . scaffold1084 TRF Tandem_Repeat 152000 152066 89 + . . scaffold1084 WUBlastX LTR_DIRS 152095 153762 1009 + . . scaffold1084 WUBlastX LTR_DIRS 153618 154571 538 + . . scaffold1084 TRF Tandem_Repeat 155372 155470 60 + . . scaffold1084 TRF Tandem_Repeat 158312 158338 54 + . . scaffold1084 TRF Tandem_Repeat 165688 165722 61 + . . scaffold1084 GLEAN promoter 167340 168339 0.999572 + . ID=CGI_10010079; scaffold1084 GLEAN mRNA 168340 187154 0.999572 + . ID=CGI_10010079; scaffold1084 TRF Tandem_Repeat 169612 169669 116 + . . scaffold1084 WUBlastX LTR_DIRS 173927 174190 73 + . . scaffold1084 WUBlastX LTR_DIRS 174759 174977 60 + . . scaffold1084 WUBlastX LTR_DIRS 174829 176247 325 + . . scaffold1084 WUBlastX LTR_DIRS 176231 176422 47 + . . scaffold1084 WUBlastX LTR_DIRS 176613 176870 169 + . . scaffold1084 WUBlastX LTR_DIRS 177403 177519 30 + . . scaffold1084 WUBlastX LTR_DIRS 177528 177719 100 + . . scaffold1084 TRF Tandem_Repeat 185143 185167 50 + . . scaffold1084 TRF Tandem_Repeat 192738 192767 60 + . . scaffold1084 TRF Tandem_Repeat 194900 194934 61 + . . scaffold1084 WUBlastX LINE_L1-Tx1 198142 198477 91 - . . scaffold1084 WUBlastX LINE_L1-Tx1 198202 198477 139 - . . scaffold1084 WUBlastX LINE_L1-Tx1 198208 198531 44 - . . scaffold1084 GLEAN promoter 198342 199341 0.831202 + . ID=CGI_10010080; scaffold1084 GLEAN mRNA 199342 208474 0.831202 + . ID=CGI_10010080; scaffold1084 WUBlastX LINE_RTE-X 199935 200384 47 + . . scaffold1084 TRF Tandem_Repeat 201069 201179 75 + . . scaffold1084 GLEAN promoter 207808 208807 0.992492 + . ID=CGI_10010081; scaffold1084 GLEAN mRNA 208808 211634 0.992492 + . ID=CGI_10010081; scaffold1084 TRF Tandem_Repeat 215623 215689 125 + . . scaffold1084 TRF Tandem_Repeat 216393 216433 64 + . . scaffold1084 WUBlastX DNA_TcMar-Tc1 218073 218621 164 - . . scaffold1084 WUBlastX DNA_TcMar-Tc1 218136 218723 121 - . . scaffold1084 WUBlastX DNA_TcMar-Tc1 218677 218757 30 - . . scaffold1084 WUBlastX DNA_TcMar-Tc1 218677 218787 25 - . . scaffold1084 TRF Tandem_Repeat 229679 229718 80 + . . scaffold1084 TRF Tandem_Repeat 232928 232976 98 + . . scaffold1084 TRF Tandem_Repeat 234119 234249 88 + . . scaffold1084 TRF Tandem_Repeat 235274 235384 84 + . . scaffold1085 GLEAN mRNA 5011 9477 1 - . ID=CGI_10000990; scaffold1085 GLEAN promoter 9478 10477 1 - . ID=CGI_10000990; scaffold1086 GLEAN mRNA 2653 3141 0.69447 - . ID=CGI_10021926; scaffold1086 GLEAN promoter 3142 4141 0.69447 - . ID=CGI_10021926; scaffold1086 GLEAN mRNA 15725 17434 1 - . ID=CGI_10021927; scaffold1086 GLEAN promoter 17435 18434 1 - . ID=CGI_10021927; scaffold1086 GLEAN mRNA 22153 25811 1 - . ID=CGI_10021928; scaffold1086 GLEAN promoter 25812 26811 1 - . ID=CGI_10021928; scaffold1086 GLEAN mRNA 26969 29875 1 - . ID=CGI_10021929; scaffold1086 GLEAN promoter 29876 30875 1 - . ID=CGI_10021929; scaffold1086 GLEAN mRNA 45979 47890 1 - . ID=CGI_10021930; scaffold1086 GLEAN promoter 47891 48890 1 - . ID=CGI_10021930; scaffold1086 WUBlastX LINE_RTE-X 51386 52024 158 - . . scaffold1086 WUBlastX LINE_RTE-X 51455 52204 72 - . . scaffold1086 WUBlastX LINE_RTE-X 51521 52042 203 - . . scaffold1086 TRF Tandem_Repeat 53268 53390 104 + . . scaffold1086 TRF Tandem_Repeat 53316 53433 98 + . . scaffold1086 TRF Tandem_Repeat 53622 53715 136 + . . scaffold1086 TRF Tandem_Repeat 58755 58827 112 + . . scaffold1086 TRF Tandem_Repeat 59738 59801 128 + . . scaffold1086 TRF Tandem_Repeat 61809 62194 605 + . . scaffold1086 TRF Tandem_Repeat 61809 62218 455 + . . scaffold1086 TRF Tandem_Repeat 61809 62219 448 + . . scaffold1086 GLEAN promoter 70811 71810 0.15447 + . ID=CGI_10021931; scaffold1086 GLEAN mRNA 71811 104849 0.15447 + . ID=CGI_10021931; scaffold1086 TRF Tandem_Repeat 78726 78781 112 + . . scaffold1086 TRF Tandem_Repeat 81099 81142 88 + . . scaffold1086 TRF Tandem_Repeat 91548 91590 77 + . . scaffold1086 WUBlastX LINE_CR1 101911 102408 107 - . . scaffold1086 WUBlastX LINE_RTE-X 102103 102522 206 - . . scaffold1086 WUBlastX LINE_Jockey 102133 102612 104 - . . scaffold1086 TRF Tandem_Repeat 103665 103714 91 + . . scaffold1086 TRF Tandem_Repeat 103923 103978 112 + . . scaffold1086 GLEAN promoter 110200 111199 0.999414 + . ID=CGI_10021932; scaffold1086 GLEAN mRNA 111200 132054 0.999414 + . ID=CGI_10021932; scaffold1086 GLEAN promoter 134925 135924 0.811173 + . ID=CGI_10021933; scaffold1086 GLEAN mRNA 135925 159829 0.811173 + . ID=CGI_10021933; scaffold1086 GLEAN mRNA 163238 171548 0.996426 - . ID=CGI_10021934; scaffold1086 TRF Tandem_Repeat 170001 170070 113 + . . scaffold1086 GLEAN promoter 171549 172548 0.996426 - . ID=CGI_10021934; scaffold1086 GLEAN promoter 172372 173371 0.817565 + . ID=CGI_10021936; scaffold1086 GLEAN mRNA 172994 173179 0.776769 - . ID=CGI_10021935; scaffold1086 GLEAN promoter 173180 174179 0.776769 - . ID=CGI_10021935; scaffold1086 GLEAN mRNA 173372 179900 0.817565 + . ID=CGI_10021936; scaffold1086 TRF Tandem_Repeat 173942 174006 109 + . . scaffold1086 TRF Tandem_Repeat 181585 181611 54 + . . scaffold1086 TRF Tandem_Repeat 187883 187935 52 + . . scaffold1086 TRF Tandem_Repeat 187886 187944 57 + . . scaffold1086 TRF Tandem_Repeat 190202 190229 56 + . . scaffold1086 TRF Tandem_Repeat 190273 190326 108 + . . scaffold1086 GLEAN promoter 208957 209956 1 + . ID=CGI_10021937; scaffold1086 GLEAN mRNA 209957 213317 1 + . ID=CGI_10021937; scaffold1086 TRF Tandem_Repeat 247045 247094 100 + . . scaffold1086 TRF Tandem_Repeat 250273 250661 564 + . . scaffold1086 WUBlastX LINE_L2 250861 251529 272 - . . scaffold1086 TRF Tandem_Repeat 251539 251772 209 + . . scaffold1086 GLEAN mRNA 259288 264174 0.999676 - . ID=CGI_10021938; scaffold1086 GLEAN promoter 264175 265174 0.999676 - . ID=CGI_10021938; scaffold1086 GLEAN promoter 270654 271653 0.974826 + . ID=CGI_10021939; scaffold1086 GLEAN mRNA 271654 286923 0.974826 + . ID=CGI_10021939; scaffold1086 TRF Tandem_Repeat 274786 275076 401 + . . scaffold1086 TRF Tandem_Repeat 279268 279312 90 + . . scaffold1086 TRF Tandem_Repeat 284593 284659 134 + . . scaffold1086 GLEAN mRNA 287550 288074 0.999984 - . ID=CGI_10021940; scaffold1086 GLEAN promoter 288075 289074 0.999984 - . ID=CGI_10021940; scaffold1086 GLEAN mRNA 300358 301326 0.999982 - . ID=CGI_10021941; scaffold1086 GLEAN promoter 301327 302326 0.999982 - . ID=CGI_10021941; scaffold1086 TRF Tandem_Repeat 303911 304777 1112 + . . scaffold1086 TRF Tandem_Repeat 304939 304992 65 + . . scaffold1086 TRF Tandem_Repeat 307246 307656 413 + . . scaffold1086 TRF Tandem_Repeat 308236 308616 681 + . . scaffold1086 GLEAN mRNA 309580 323714 0.999981 - . ID=CGI_10021942; scaffold1086 TRF Tandem_Repeat 310484 310536 106 + . . scaffold1086 TRF Tandem_Repeat 321339 321404 125 + . . scaffold1086 GLEAN promoter 323715 324714 0.999981 - . ID=CGI_10021942; scaffold1086 TRF Tandem_Repeat 327198 327344 127 + . . scaffold1086 TRF Tandem_Repeat 327198 327348 98 + . . scaffold1086 TRF Tandem_Repeat 327218 327369 101 + . . scaffold1086 TRF Tandem_Repeat 330367 330487 88 + . . scaffold1086 TRF Tandem_Repeat 330567 330625 86 + . . scaffold1086 TRF Tandem_Repeat 334954 335005 50 + . . scaffold1086 GLEAN mRNA 336729 345916 0.999942 - . ID=CGI_10021943; scaffold1086 TRF Tandem_Repeat 339141 339189 98 + . . scaffold1086 TRF Tandem_Repeat 342140 342170 53 + . . scaffold1086 GLEAN promoter 345917 346916 0.999942 - . ID=CGI_10021943; scaffold1086 GLEAN mRNA 351673 379165 0.990448 - . ID=CGI_10021944; scaffold1086 TRF Tandem_Repeat 370157 370330 144 + . . scaffold1086 GLEAN promoter 379166 380165 0.990448 - . ID=CGI_10021944; scaffold1086 GLEAN mRNA 385000 413907 0.769305 - . ID=CGI_10021945; scaffold1086 TRF Tandem_Repeat 404401 405210 1210 + . . scaffold1086 TRF Tandem_Repeat 404401 405210 1270 + . . scaffold1086 GLEAN promoter 413908 414907 0.769305 - . ID=CGI_10021945; scaffold1086 TRF Tandem_Repeat 414047 414091 90 + . . scaffold1086 GLEAN promoter 427526 428525 0.816846 + . ID=CGI_10021946; scaffold1086 GLEAN mRNA 428526 446285 0.816846 + . ID=CGI_10021946; scaffold1086 TRF Tandem_Repeat 432353 432416 128 + . . scaffold1086 TRF Tandem_Repeat 434097 434887 956 + . . scaffold1086 TRF Tandem_Repeat 434097 434887 980 + . . scaffold1086 TRF Tandem_Repeat 435541 435714 294 + . . scaffold1086 GLEAN mRNA 449503 467383 0.555551 - . ID=CGI_10021947; scaffold1086 TRF Tandem_Repeat 459170 459199 60 + . . scaffold1086 GLEAN promoter 467384 468383 0.555551 - . ID=CGI_10021947; scaffold1086 GLEAN mRNA 467526 495412 0.681562 - . ID=CGI_10021948; scaffold1086 GLEAN promoter 495413 496412 0.681562 - . ID=CGI_10021948; scaffold1086 GLEAN promoter 503678 504677 0.999329 + . ID=CGI_10021949; scaffold1086 GLEAN mRNA 504678 507824 0.999329 + . ID=CGI_10021949; scaffold1086 TRF Tandem_Repeat 512858 513321 455 + . . scaffold1086 TRF Tandem_Repeat 512901 513196 344 + . . scaffold1086 GLEAN promoter 518178 519177 0.999998 + . ID=CGI_10021950; scaffold1086 GLEAN mRNA 519178 530369 0.999998 + . ID=CGI_10021950; scaffold1086 TRF Tandem_Repeat 519520 519570 75 + . . scaffold1086 TRF Tandem_Repeat 519522 519568 62 + . . scaffold1086 TRF Tandem_Repeat 520249 520317 72 + . . scaffold1086 TRF Tandem_Repeat 521616 521652 65 + . . scaffold1086 TRF Tandem_Repeat 521652 521688 74 + . . scaffold1086 TRF Tandem_Repeat 536669 536744 134 + . . scaffold1086 TRF Tandem_Repeat 539908 539974 89 + . . scaffold1086 TRF Tandem_Repeat 540468 540498 62 + . . scaffold1086 TRF Tandem_Repeat 540496 540520 50 + . . scaffold1086 TRF Tandem_Repeat 540709 540761 97 + . . scaffold1086 TRF Tandem_Repeat 561333 561427 174 + . . scaffold1086 TRF Tandem_Repeat 561649 561694 92 + . . scaffold1086 TRF Tandem_Repeat 586261 586295 70 + . . scaffold1086 GLEAN mRNA 601486 602495 1 - . ID=CGI_10021951; scaffold1086 GLEAN promoter 602496 603495 1 - . ID=CGI_10021951; scaffold1086 GLEAN promoter 621566 622565 0.999977 + . ID=CGI_10021952; scaffold1086 GLEAN mRNA 622566 630913 0.999977 + . ID=CGI_10021952; scaffold1086 TRF Tandem_Repeat 634352 634389 76 + . . scaffold1086 TRF Tandem_Repeat 654677 654724 96 + . . scaffold1086 GLEAN mRNA 657822 659941 1 - . ID=CGI_10021953; scaffold1086 GLEAN promoter 659942 660941 1 - . ID=CGI_10021953; scaffold1086 TRF Tandem_Repeat 660054 660091 76 + . . scaffold1086 GLEAN mRNA 686293 692553 0.611059 - . ID=CGI_10021954; scaffold1086 GLEAN promoter 692554 693553 0.611059 - . ID=CGI_10021954; scaffold1086 TRF Tandem_Repeat 702247 702325 65 + . . scaffold1086 TRF Tandem_Repeat 712683 712744 124 + . . scaffold1087 TRF Tandem_Repeat 445 472 56 + . . scaffold1087 GLEAN promoter 458 1457 0.544547 + . ID=CGI_10001183; scaffold1087 TRF Tandem_Repeat 515 556 84 + . . scaffold1087 TRF Tandem_Repeat 1315 1350 72 + . . scaffold1087 GLEAN mRNA 1458 16224 0.544547 + . ID=CGI_10001183; scaffold1087 WUBlastX LINE_CR1 8727 9248 43 - . . scaffold1087 WUBlastX LTR_Gypsy 11230 11994 265 + . . scaffold1087 WUBlastX LTR_Gypsy 11281 11928 267 + . . scaffold1087 WUBlastX LTR_Gypsy 12928 14586 679 + . . scaffold1087 WUBlastX LTR_Gypsy 13249 14553 696 + . . scaffold1087 WUBlastX LTR_Gypsy 13627 14586 747 + . . scaffold1087 WUBlastX LTR_Gypsy 13765 14775 352 + . . scaffold1087 WUBlastX LTR_Gypsy 14788 15588 415 + . . scaffold1087 WUBlastX LTR_Gypsy 14962 15729 376 + . . scaffold1087 WUBlastX LTR_Gypsy 14977 15588 529 + . . scaffold1088 GLEAN mRNA 405 2256 0.999987 - . ID=CGI_10003646; scaffold1088 GLEAN promoter 2257 3256 0.999987 - . ID=CGI_10003646; scaffold1088 GLEAN mRNA 3331 11558 0.998361 - . ID=CGI_10003647; scaffold1088 TRF Tandem_Repeat 9737 9841 99 + . . scaffold1088 GLEAN promoter 11559 12558 0.998361 - . ID=CGI_10003647; scaffold1088 GLEAN mRNA 11995 14581 0.999675 - . ID=CGI_10003648; scaffold1088 GLEAN promoter 14582 15581 0.999675 - . ID=CGI_10003648; scaffold1088 TRF Tandem_Repeat 15169 15201 66 + . . scaffold1088 GLEAN promoter 17888 18887 0.999351 + . ID=CGI_10003649; scaffold1088 GLEAN mRNA 18888 23409 0.999351 + . ID=CGI_10003649; scaffold1088 GLEAN promoter 26152 27151 0.999999 + . ID=CGI_10003650; scaffold1088 GLEAN mRNA 27152 28351 0.999999 + . ID=CGI_10003650; scaffold1088 GLEAN mRNA 30301 38437 0.893641 - . ID=CGI_10003651; scaffold1088 WUBlastX LINE_R2-Hero 37106 37702 134 + . . scaffold1088 WUBlastX LINE_R2-Hero 37533 37742 68 + . . scaffold1088 GLEAN promoter 38438 39437 0.893641 - . ID=CGI_10003651; scaffold1088 GLEAN mRNA 44112 68218 0.998923 - . ID=CGI_10003652; scaffold1088 TRF Tandem_Repeat 63516 63548 66 + . . scaffold1088 GLEAN promoter 67750 68749 1 + . ID=CGI_10003653; scaffold1088 GLEAN promoter 68219 69218 0.998923 - . ID=CGI_10003652; scaffold1088 GLEAN mRNA 68750 70595 1 + . ID=CGI_10003653; scaffold1088 GLEAN promoter 69971 70970 1 + . ID=CGI_10003654; scaffold1088 GLEAN mRNA 70971 71171 1 + . ID=CGI_10003654; scaffold1088 TRF Tandem_Repeat 74200 74263 83 + . . scaffold1089 TRF Tandem_Repeat 5531 5569 60 + . . scaffold1089 GLEAN mRNA 36608 49102 0.394146 - . ID=CGI_10005629; scaffold1089 TRF Tandem_Repeat 46054 46096 86 + . . scaffold1089 GLEAN promoter 49103 50102 0.394146 - . ID=CGI_10005629; scaffold1089 TRF Tandem_Repeat 57073 57106 59 + . . scaffold1089 TRF Tandem_Repeat 61151 61204 67 + . . scaffold1089 WUBlastX LINE_Penelope 63311 63928 263 - . . scaffold1089 WUBlastX LINE_Penelope 64385 64486 25 + . . scaffold1089 WUBlastX LINE_Penelope 64464 64697 94 + . . scaffold1089 WUBlastX LINE_Penelope 64512 64697 108 + . . scaffold1089 WUBlastX LINE_Penelope 65432 65740 30 + . . scaffold1089 TRF Tandem_Repeat 70139 70174 72 + . . scaffold1089 TRF Tandem_Repeat 95184 95228 72 + . . scaffold1089 TRF Tandem_Repeat 112565 112600 72 + . . scaffold1089 WUBlastX LTR_DIRS 113421 113936 238 - . . scaffold1089 WUBlastX LTR_DIRS? 113905 114114 48 - . . scaffold1089 WUBlastX LTR_DIRS 114751 115002 116 - . . scaffold1089 TRF Tandem_Repeat 115758 115843 79 + . . scaffold1089 TRF Tandem_Repeat 125147 125201 101 + . . scaffold109 GLEAN mRNA 10105 10482 0.866433 - . ID=CGI_10022108; scaffold109 GLEAN promoter 10483 11482 0.866433 - . ID=CGI_10022108; scaffold109 WUBlastX DNA_Sola 11552 11896 116 - . . scaffold109 WUBlastX DNA_Sola 11904 12284 84 - . . scaffold109 WUBlastX DNA_Sola 12373 12570 27 - . . scaffold109 WUBlastX DNA_Sola 12602 12784 79 - . . scaffold109 WUBlastX DNA_Sola 12602 12844 65 - . . scaffold109 TRF Tandem_Repeat 22594 22620 54 + . . scaffold109 TRF Tandem_Repeat 36348 36393 92 + . . scaffold109 WUBlastX LINE_L2 43948 44157 42 - . . scaffold109 WUBlastX LINE_CR1-L2 44032 44136 43 - . . scaffold109 WUBlastX LINE_L2 44138 45211 644 - . . scaffold109 WUBlastX LINE_L2 45205 45432 144 - . . scaffold109 WUBlastX LINE_L2 45447 45722 95 - . . scaffold109 WUBlastX LINE_CR1 45474 45701 144 - . . scaffold109 WUBlastX LINE_RTE-RTE 45477 45773 42 - . . scaffold109 WUBlastX LINE_CR1-L2 45698 45820 22 - . . scaffold109 WUBlastX LINE_CR1-L2 45841 46113 44 - . . scaffold109 WUBlastX LINE_CR1 46572 46745 23 - . . scaffold109 TRF Tandem_Repeat 50909 50941 59 + . . scaffold109 TRF Tandem_Repeat 57915 57939 50 + . . scaffold109 TRF Tandem_Repeat 64285 64321 74 + . . scaffold109 WUBlastX LTR_Gypsy 71166 71585 140 - . . scaffold109 WUBlastX LTR_Gypsy 71495 71866 179 - . . scaffold109 WUBlastX LTR_Gypsy 71845 72093 105 - . . scaffold109 WUBlastX LTR_Gypsy 72003 72584 145 - . . scaffold109 WUBlastX LTR_Gypsy 72093 72731 121 - . . scaffold109 WUBlastX LTR_Gypsy 72093 72584 296 - . . scaffold109 TRF Tandem_Repeat 82863 82888 52 + . . scaffold109 TRF Tandem_Repeat 83826 83852 54 + . . scaffold109 TRF Tandem_Repeat 89688 89739 58 + . . scaffold109 TRF Tandem_Repeat 92301 92360 120 + . . scaffold109 TRF Tandem_Repeat 102158 102202 72 + . . scaffold109 TRF Tandem_Repeat 102484 102518 61 + . . scaffold109 TRF Tandem_Repeat 107118 107159 68 + . . scaffold109 TRF Tandem_Repeat 107121 107158 51 + . . scaffold109 WUBlastX LINE_Penelope 131984 132466 82 + . . scaffold109 WUBlastX LINE_Penelope 132062 132481 138 + . . scaffold109 WUBlastX LINE_Penelope 132080 132421 179 + . . scaffold109 TRF Tandem_Repeat 139892 139926 54 + . . scaffold109 WUBlastX LINE_L2 147069 147287 45 + . . scaffold109 WUBlastX LINE_L2 147352 147453 43 + . . scaffold109 GLEAN mRNA 148766 153449 0.960125 - . ID=CGI_10022109; scaffold109 TRF Tandem_Repeat 150092 150145 99 + . . scaffold109 TRF Tandem_Repeat 150969 151010 84 + . . scaffold109 GLEAN promoter 153450 154449 0.960125 - . ID=CGI_10022109; scaffold109 GLEAN mRNA 154795 173118 0.959391 - . ID=CGI_10022110; scaffold109 TRF Tandem_Repeat 156994 157129 218 + . . scaffold109 TRF Tandem_Repeat 158507 158536 60 + . . scaffold109 TRF Tandem_Repeat 169784 169814 53 + . . scaffold109 GLEAN promoter 173119 174118 0.959391 - . ID=CGI_10022110; scaffold109 TRF Tandem_Repeat 181194 181223 60 + . . scaffold109 TRF Tandem_Repeat 189397 189453 78 + . . scaffold109 TRF Tandem_Repeat 190165 190222 116 + . . scaffold109 GLEAN mRNA 198132 213817 0.999998 - . ID=CGI_10022111; scaffold109 GLEAN promoter 213818 214817 0.999998 - . ID=CGI_10022111; scaffold109 TRF Tandem_Repeat 214439 214490 95 + . . scaffold109 TRF Tandem_Repeat 214539 214570 55 + . . scaffold109 GLEAN mRNA 221861 297851 0.997753 - . ID=CGI_10022112; scaffold109 TRF Tandem_Repeat 237408 238073 710 + . . scaffold109 WUBlastX DNA_hAT-Ac 239996 240154 59 + . . scaffold109 WUBlastX DNA_TcMar-Tc1 252374 253243 185 - . . scaffold109 WUBlastX DNA_TcMar-Tc1 252772 253380 61 - . . scaffold109 WUBlastX DNA_TcMar-Tc1 253261 253410 29 - . . scaffold109 WUBlastX DNA_TcMar-Tc2 273700 275049 1088 + . . scaffold109 TRF Tandem_Repeat 290570 291094 624 + . . scaffold109 TRF Tandem_Repeat 290570 291094 637 + . . scaffold109 GLEAN promoter 297852 298851 0.997753 - . ID=CGI_10022112; scaffold109 GLEAN mRNA 303639 363474 0.446526 - . ID=CGI_10022113; scaffold109 TRF Tandem_Repeat 310813 310865 56 + . . scaffold109 TRF Tandem_Repeat 314945 315037 80 + . . scaffold109 TRF Tandem_Repeat 315444 316343 1615 + . . scaffold109 WUBlastX LINE_RTE-X 330197 330589 54 - . . scaffold109 WUBlastX LINE_RTE-X 330266 330589 74 - . . scaffold109 WUBlastX LINE_RTE-X 330377 330766 96 - . . scaffold109 TRF Tandem_Repeat 343213 343260 60 + . . scaffold109 TRF Tandem_Repeat 343216 343260 81 + . . scaffold109 TRF Tandem_Repeat 355395 356084 1109 + . . scaffold109 TRF Tandem_Repeat 360406 361236 1117 + . . scaffold109 GLEAN promoter 363475 364474 0.446526 - . ID=CGI_10022113; scaffold109 WUBlastX LINE_L1 363967 364023 26 - . . scaffold109 WUBlastX LINE_L1-Tx1 364256 367702 1656 - . . scaffold109 TRF Tandem_Repeat 374891 375086 322 + . . scaffold109 GLEAN mRNA 383161 385447 0.974634 - . ID=CGI_10022114; scaffold109 GLEAN promoter 385448 386447 0.974634 - . ID=CGI_10022114; scaffold109 GLEAN mRNA 385562 394733 0.521451 - . ID=CGI_10022115; scaffold109 TRF Tandem_Repeat 389303 389499 292 + . . scaffold109 TRF Tandem_Repeat 392068 392729 979 + . . scaffold109 GLEAN promoter 394734 395733 0.521451 - . ID=CGI_10022115; scaffold109 GLEAN promoter 401924 402923 0.512268 + . ID=CGI_10022116; scaffold109 GLEAN mRNA 402924 422989 0.512268 + . ID=CGI_10022116; scaffold109 TRF Tandem_Repeat 413583 414404 929 + . . scaffold109 TRF Tandem_Repeat 415962 416218 94 + . . scaffold109 TRF Tandem_Repeat 416077 416253 116 + . . scaffold109 TRF Tandem_Repeat 416113 416228 55 + . . scaffold109 TRF Tandem_Repeat 419580 419619 80 + . . scaffold109 TRF Tandem_Repeat 422094 422185 163 + . . scaffold109 TRF Tandem_Repeat 434993 435077 64 + . . scaffold109 GLEAN mRNA 437391 437918 0.801517 - . ID=CGI_10022117; scaffold109 GLEAN promoter 437919 438918 0.801517 - . ID=CGI_10022117; scaffold109 GLEAN promoter 441746 442745 1 + . ID=CGI_10022118; scaffold109 GLEAN mRNA 442746 451659 1 + . ID=CGI_10022118; scaffold109 TRF Tandem_Repeat 445957 446002 92 + . . scaffold109 TRF Tandem_Repeat 446655 446939 153 + . . scaffold109 TRF Tandem_Repeat 446655 446935 175 + . . scaffold109 TRF Tandem_Repeat 448512 449295 383 + . . scaffold109 GLEAN promoter 452836 453835 0.998602 + . ID=CGI_10022119; scaffold109 GLEAN mRNA 453836 459067 0.998602 + . ID=CGI_10022119; scaffold109 TRF Tandem_Repeat 469545 469590 58 + . . scaffold109 TRF Tandem_Repeat 471533 471570 67 + . . scaffold109 GLEAN promoter 480279 481278 0.513442 + . ID=CGI_10022120; scaffold109 GLEAN mRNA 481279 512175 0.513442 + . ID=CGI_10022120; scaffold109 TRF Tandem_Repeat 486991 487030 80 + . . scaffold109 TRF Tandem_Repeat 502943 502972 60 + . . scaffold109 TRF Tandem_Repeat 512181 512343 224 + . . scaffold109 GLEAN promoter 514895 515894 0.918507 + . ID=CGI_10022121; scaffold109 GLEAN mRNA 515895 534748 0.918507 + . ID=CGI_10022121; scaffold109 TRF Tandem_Repeat 520103 520149 85 + . . scaffold109 TRF Tandem_Repeat 523693 523720 56 + . . scaffold109 TRF Tandem_Repeat 526773 526817 63 + . . scaffold109 TRF Tandem_Repeat 534284 534325 84 + . . scaffold109 GLEAN mRNA 535068 548612 0.999999 - . ID=CGI_10022122; scaffold109 TRF Tandem_Repeat 544995 545537 761 + . . scaffold109 TRF Tandem_Repeat 544995 545638 750 + . . scaffold109 TRF Tandem_Repeat 544996 545638 617 + . . scaffold109 GLEAN promoter 548613 549612 0.999999 - . ID=CGI_10022122; scaffold109 TRF Tandem_Repeat 551459 551719 92 + . . scaffold109 TRF Tandem_Repeat 551475 551685 108 + . . scaffold109 GLEAN mRNA 556306 602247 0.930391 - . ID=CGI_10022123; scaffold109 TRF Tandem_Repeat 569823 569857 70 + . . scaffold109 TRF Tandem_Repeat 587130 587175 92 + . . scaffold109 TRF Tandem_Repeat 588123 588157 52 + . . scaffold109 TRF Tandem_Repeat 599337 599392 112 + . . scaffold109 GLEAN promoter 601483 602482 0.966112 + . ID=CGI_10022124; scaffold109 GLEAN promoter 602248 603247 0.930391 - . ID=CGI_10022123; scaffold109 GLEAN mRNA 602483 628646 0.966112 + . ID=CGI_10022124; scaffold109 TRF Tandem_Repeat 615727 616605 1286 + . . scaffold109 TRF Tandem_Repeat 617549 617695 73 + . . scaffold109 TRF Tandem_Repeat 617611 617740 93 + . . scaffold109 TRF Tandem_Repeat 621474 621523 100 + . . scaffold109 TRF Tandem_Repeat 627721 627922 235 + . . scaffold109 GLEAN mRNA 628929 630995 0.999999 - . ID=CGI_10022125; scaffold109 GLEAN promoter 630996 631995 0.999999 - . ID=CGI_10022125; scaffold109 GLEAN promoter 643529 644528 0.271219 + . ID=CGI_10022126; scaffold109 GLEAN mRNA 644529 653883 0.271219 + . ID=CGI_10022126; scaffold109 TRF Tandem_Repeat 644830 644863 68 + . . scaffold109 GLEAN promoter 655814 656813 1 + . ID=CGI_10022127; scaffold109 GLEAN mRNA 656814 658009 1 + . ID=CGI_10022127; scaffold109 GLEAN promoter 658852 659851 0.999676 + . ID=CGI_10022128; scaffold109 GLEAN mRNA 659852 662499 0.999676 + . ID=CGI_10022128; scaffold109 GLEAN promoter 665099 666098 0.999676 + . ID=CGI_10022129; scaffold109 GLEAN mRNA 666099 670172 0.999676 + . ID=CGI_10022129; scaffold109 TRF Tandem_Repeat 670851 670950 98 + . . scaffold109 GLEAN mRNA 671018 672397 0.996199 - . ID=CGI_10022130; scaffold109 GLEAN promoter 672398 673397 0.996199 - . ID=CGI_10022130; scaffold109 GLEAN mRNA 674502 677458 1 - . ID=CGI_10022131; scaffold109 GLEAN promoter 677459 678458 1 - . ID=CGI_10022131; scaffold109 GLEAN promoter 678437 679436 0.997003 + . ID=CGI_10022132; scaffold109 GLEAN mRNA 679437 684859 0.997003 + . ID=CGI_10022132; scaffold109 TRF Tandem_Repeat 680600 680625 52 + . . scaffold109 TRF Tandem_Repeat 684536 684577 84 + . . scaffold109 TRF Tandem_Repeat 686320 686374 110 + . . scaffold109 TRF Tandem_Repeat 691127 691177 93 + . . scaffold109 GLEAN promoter 697456 698455 0.874485 + . ID=CGI_10022133; scaffold109 GLEAN mRNA 698456 718642 0.874485 + . ID=CGI_10022133; scaffold109 TRF Tandem_Repeat 721903 721950 71 + . . scaffold109 TRF Tandem_Repeat 722466 722515 100 + . . scaffold1090 WUBlastX DNA_IS4EU 3596 3847 103 - . . scaffold1090 WUBlastX DNA_IS4EU 3859 4500 302 - . . scaffold1091 WUBlastX LTR_Gypsy 103 1395 321 - . . scaffold1091 WUBlastX LTR_Gypsy 283 2514 222 - . . scaffold1091 WUBlastX LTR_Gypsy 331 1191 730 - . . scaffold1091 WUBlastX LTR_Gypsy 334 1992 682 - . . scaffold1091 WUBlastX LTR_Gypsy 2746 3192 53 - . . scaffold1091 GLEAN mRNA 2872 7633 0.989308 - . ID=CGI_10002833; scaffold1091 GLEAN promoter 7345 8344 0.262738 + . ID=CGI_10002834; scaffold1091 GLEAN promoter 7634 8633 0.989308 - . ID=CGI_10002833; scaffold1091 GLEAN mRNA 8345 39747 0.262738 + . ID=CGI_10002834; scaffold1091 TRF Tandem_Repeat 21942 22091 140 + . . scaffold1092 GLEAN mRNA 1648 2355 0.999995 - . ID=CGI_10001660; scaffold1092 GLEAN promoter 2356 3355 0.999995 - . ID=CGI_10001660; scaffold1092 GLEAN promoter 18161 19160 0.999995 + . ID=CGI_10001661; scaffold1092 GLEAN promoter 19035 20034 0.999372 + . ID=CGI_10001662; scaffold1092 GLEAN mRNA 19161 19793 0.999995 + . ID=CGI_10001661; scaffold1092 GLEAN mRNA 20035 20922 0.999372 + . ID=CGI_10001662; scaffold1093 GLEAN promoter 1 353 1 + . ID=CGI_10019782; scaffold1093 GLEAN mRNA 354 901 1 + . ID=CGI_10019782; scaffold1093 GLEAN mRNA 5852 21748 0.998505 - . ID=CGI_10019783; scaffold1093 TRF Tandem_Repeat 6597 6762 120 + . . scaffold1093 GLEAN promoter 21749 22748 0.998505 - . ID=CGI_10019783; scaffold1093 GLEAN mRNA 22347 31028 0.544158 - . ID=CGI_10019784; scaffold1093 GLEAN promoter 31029 32028 0.544158 - . ID=CGI_10019784; scaffold1093 TRF Tandem_Repeat 33769 33800 55 + . . scaffold1093 TRF Tandem_Repeat 35043 35199 194 + . . scaffold1093 TRF Tandem_Repeat 35046 35104 50 + . . scaffold1093 GLEAN mRNA 37195 38848 1 - . ID=CGI_10019785; scaffold1093 TRF Tandem_Repeat 37843 37889 85 + . . scaffold1093 GLEAN promoter 38849 39848 1 - . ID=CGI_10019785; scaffold1093 TRF Tandem_Repeat 41974 42021 96 + . . scaffold1093 WUBlastX LINE_L1-Tx1 43245 43511 21 - . . scaffold1093 WUBlastX LINE_L1-Tx1 43711 43779 31 - . . scaffold1093 WUBlastX LINE_L1 43913 44056 51 - . . scaffold1093 WUBlastX LINE_DRE 43951 44298 97 - . . scaffold1093 WUBlastX LINE_L1-Tx1 44044 44949 234 - . . scaffold1093 WUBlastX LINE_L1 45069 45188 49 - . . scaffold1093 WUBlastX LINE_Jockey 45072 45236 22 - . . scaffold1093 WUBlastX LINE_L2 48901 49317 49 + . . scaffold1093 WUBlastX LINE_L2 49069 49320 67 + . . scaffold1093 WUBlastX LINE_L2 49328 49813 53 + . . scaffold1093 WUBlastX LINE_L2 49343 50251 33 + . . scaffold1093 WUBlastX LINE_R1 49400 49990 39 + . . scaffold1093 WUBlastX LINE_L2 49403 49792 174 + . . scaffold1093 WUBlastX LINE_L2 49412 49897 75 + . . scaffold1093 WUBlastX LINE_L2 50141 50236 33 + . . scaffold1093 TRF Tandem_Repeat 51244 51288 90 + . . scaffold1093 GLEAN promoter 52526 53525 0.803161 + . ID=CGI_10019786; scaffold1093 GLEAN mRNA 53526 55196 0.803161 + . ID=CGI_10019786; scaffold1093 WUBlastX LTR_Pao 56143 56271 47 + . . scaffold1093 WUBlastX LTR_Pao 56273 56440 84 + . . scaffold1093 WUBlastX DNA_hAT-Tip100 67409 67648 50 - . . scaffold1093 WUBlastX DNA_hAT-Tip100 67514 67672 32 - . . scaffold1093 WUBlastX DNA_hAT-Tip100 67684 68244 210 - . . scaffold1093 WUBlastX DNA_hAT-Tip100 67684 68379 86 - . . scaffold1093 WUBlastX DNA_hAT-Tip100 68669 68908 40 - . . scaffold1093 TRF Tandem_Repeat 74193 74231 50 + . . scaffold1093 GLEAN promoter 76464 77463 0.558336 + . ID=CGI_10019787; scaffold1093 GLEAN mRNA 77464 87990 0.558336 + . ID=CGI_10019787; scaffold1093 WUBlastX LINE_L2 81963 82223 67 + . . scaffold1093 WUBlastX LINE_CR1-L2 82044 82265 83 + . . scaffold1093 WUBlastX LINE_L2 82761 82955 39 + . . scaffold1093 TRF Tandem_Repeat 83563 83610 96 + . . scaffold1093 GLEAN promoter 92427 93426 0.593391 + . ID=CGI_10019788; scaffold1093 TRF Tandem_Repeat 92523 92566 88 + . . scaffold1093 GLEAN mRNA 93427 95535 0.593391 + . ID=CGI_10019788; scaffold1093 GLEAN promoter 97302 98301 1 + . ID=CGI_10019789; scaffold1093 GLEAN mRNA 98302 101018 1 + . ID=CGI_10019789; scaffold1093 TRF Tandem_Repeat 103550 103682 148 + . . scaffold1093 TRF Tandem_Repeat 103609 103682 120 + . . scaffold1093 TRF Tandem_Repeat 105158 105210 106 + . . scaffold1093 WUBlastX LINE_L1-Tx1 105268 105522 34 - . . scaffold1093 WUBlastX LINE_L1 105361 105525 61 - . . scaffold1093 WUBlastX LINE_L1 105863 106267 57 - . . scaffold1093 WUBlastX LINE_L2 105881 106384 36 - . . scaffold1093 WUBlastX LINE_L2 105881 106477 26 - . . scaffold1093 GLEAN promoter 111395 112394 1 + . ID=CGI_10019790; scaffold1093 GLEAN mRNA 112395 115601 1 + . ID=CGI_10019790; scaffold1093 GLEAN mRNA 117134 127144 0.429192 - . ID=CGI_10019791; scaffold1093 TRF Tandem_Repeat 117653 117851 310 + . . scaffold1093 GLEAN promoter 127145 128144 0.429192 - . ID=CGI_10019791; scaffold1093 GLEAN mRNA 127154 145095 0.531418 - . ID=CGI_10019792; scaffold1093 TRF Tandem_Repeat 127740 127869 131 + . . scaffold1093 TRF Tandem_Repeat 127776 127870 74 + . . scaffold1093 TRF Tandem_Repeat 134392 134436 90 + . . scaffold1093 TRF Tandem_Repeat 142580 143739 1359 + . . scaffold1093 TRF Tandem_Repeat 143332 143738 229 + . . scaffold1093 TRF Tandem_Repeat 144801 144844 79 + . . scaffold1093 GLEAN promoter 145096 146095 0.531418 - . ID=CGI_10019792; scaffold1093 GLEAN mRNA 145703 149713 1 - . ID=CGI_10019793; scaffold1093 TRF Tandem_Repeat 147372 147427 112 + . . scaffold1093 TRF Tandem_Repeat 149356 149414 118 + . . scaffold1093 GLEAN promoter 149714 150713 1 - . ID=CGI_10019793; scaffold1093 TRF Tandem_Repeat 151002 151045 79 + . . scaffold1093 WUBlastX DNA_TcMar-Tc1 156020 156259 52 + . . scaffold1093 WUBlastX DNA_TcMar-Tc1 156267 156509 76 + . . scaffold1093 WUBlastX DNA_TcMar-Tc1 156309 156512 94 + . . scaffold1093 WUBlastX DNA_TcMar-Tc1 156444 156554 30 + . . scaffold1093 TRF Tandem_Repeat 158051 158082 55 + . . scaffold1093 TRF Tandem_Repeat 158194 158945 814 + . . scaffold1093 TRF Tandem_Repeat 159994 160080 63 + . . scaffold1093 GLEAN mRNA 162401 173360 1 - . ID=CGI_10019794; scaffold1093 GLEAN promoter 164790 165789 0.618186 + . ID=CGI_10019795; scaffold1093 GLEAN mRNA 165790 166260 0.618186 + . ID=CGI_10019795; scaffold1093 GLEAN promoter 173361 174360 1 - . ID=CGI_10019794; scaffold1093 GLEAN mRNA 189725 212931 0.988682 - . ID=CGI_10019796; scaffold1093 TRF Tandem_Repeat 199450 199496 94 + . . scaffold1093 GLEAN promoter 212932 213931 0.988682 - . ID=CGI_10019796; scaffold1093 TRF Tandem_Repeat 232227 232276 100 + . . scaffold1093 GLEAN mRNA 303560 320405 0.999021 - . ID=CGI_10019797; scaffold1093 GLEAN promoter 320406 321405 0.999021 - . ID=CGI_10019797; scaffold1093 TRF Tandem_Repeat 320490 320726 271 + . . scaffold1093 TRF Tandem_Repeat 320494 320726 331 + . . scaffold1093 GLEAN promoter 323332 324331 1 + . ID=CGI_10019798; scaffold1093 TRF Tandem_Repeat 323985 324027 86 + . . scaffold1093 GLEAN mRNA 324332 324730 1 + . ID=CGI_10019798; scaffold1093 TRF Tandem_Repeat 326550 326611 81 + . . scaffold1093 GLEAN promoter 342932 343931 1 + . ID=CGI_10019799; scaffold1093 GLEAN mRNA 343932 345866 1 + . ID=CGI_10019799; scaffold1093 GLEAN promoter 346175 347174 0.772999 + . ID=CGI_10019800; scaffold1093 GLEAN mRNA 347175 350607 0.772999 + . ID=CGI_10019800; scaffold1093 GLEAN promoter 349636 350635 0.999349 + . ID=CGI_10019801; scaffold1093 GLEAN mRNA 350636 356822 0.999349 + . ID=CGI_10019801; scaffold1093 GLEAN mRNA 360643 362034 0.999676 - . ID=CGI_10019802; scaffold1093 GLEAN promoter 362035 363034 0.999676 - . ID=CGI_10019802; scaffold1093 TRF Tandem_Repeat 362506 362532 54 + . . scaffold1093 TRF Tandem_Repeat 362610 362683 67 + . . scaffold1093 TRF Tandem_Repeat 362611 362669 82 + . . scaffold1093 TRF Tandem_Repeat 362613 362682 70 + . . scaffold1093 TRF Tandem_Repeat 362708 362775 118 + . . scaffold1093 GLEAN mRNA 363843 365118 1 - . ID=CGI_10019803; scaffold1093 TRF Tandem_Repeat 364492 364543 104 + . . scaffold1093 GLEAN promoter 365119 366118 1 - . ID=CGI_10019803; scaffold1093 GLEAN mRNA 366957 369115 0.998817 - . ID=CGI_10019804; scaffold1093 GLEAN promoter 369116 370115 0.998817 - . ID=CGI_10019804; scaffold1093 TRF Tandem_Repeat 369169 369377 229 + . . scaffold1093 TRF Tandem_Repeat 369169 369377 227 + . . scaffold1093 WUBlastX LINE_RTE-X 369863 370627 78 - . . scaffold1093 WUBlastX LINE_RTE-X 369956 370591 112 - . . scaffold1093 TRF Tandem_Repeat 371388 371491 136 + . . scaffold1093 TRF Tandem_Repeat 371388 371491 136 + . . scaffold1093 TRF Tandem_Repeat 374206 374608 675 + . . scaffold1093 GLEAN mRNA 375935 383271 0.968007 - . ID=CGI_10019805; scaffold1093 GLEAN promoter 383272 384271 0.968007 - . ID=CGI_10019805; scaffold1093 GLEAN mRNA 397023 398015 0.645788 - . ID=CGI_10019806; scaffold1093 GLEAN promoter 398016 399015 0.645788 - . ID=CGI_10019806; scaffold1093 GLEAN promoter 403049 404048 0.987785 + . ID=CGI_10019807; scaffold1093 GLEAN mRNA 404049 410721 0.987785 + . ID=CGI_10019807; scaffold1093 WUBlastX LINE_Penelope 404434 404619 33 - . . scaffold1093 WUBlastX LINE_Penelope 404482 404580 41 - . . scaffold1093 WUBlastX LINE_Penelope 404598 404882 42 - . . scaffold1093 WUBlastX LINE_Penelope 404667 404882 58 - . . scaffold1093 WUBlastX LINE_Penelope 404881 405039 55 - . . scaffold1093 WUBlastX LINE_Penelope 404881 405096 28 - . . scaffold1093 WUBlastX LINE_Penelope 405098 405415 65 - . . scaffold1093 WUBlastX LINE_Penelope 405408 405581 106 - . . scaffold1093 WUBlastX LINE_Penelope 405408 405791 37 - . . scaffold1093 WUBlastX LINE_Penelope 405408 405659 61 - . . scaffold1093 TRF Tandem_Repeat 413046 413137 184 + . . scaffold1093 TRF Tandem_Repeat 415703 415773 142 + . . scaffold1093 TRF Tandem_Repeat 419708 419770 67 + . . scaffold1093 TRF Tandem_Repeat 419719 419771 81 + . . scaffold1093 GLEAN promoter 420292 421291 0.981582 + . ID=CGI_10019808; scaffold1093 GLEAN mRNA 421292 452469 0.981582 + . ID=CGI_10019808; scaffold1093 WUBlastX DNA_Sola 424635 425015 58 + . . scaffold1093 WUBlastX DNA_Sola 424716 425009 65 + . . scaffold1093 WUBlastX DNA_Sola 424848 425048 59 + . . scaffold1093 GLEAN mRNA 432349 434064 0.768028 - . ID=CGI_10019809; scaffold1093 GLEAN promoter 434065 435064 0.768028 - . ID=CGI_10019809; scaffold1093 TRF Tandem_Repeat 437370 437416 94 + . . scaffold1093 TRF Tandem_Repeat 438703 438756 76 + . . scaffold1093 TRF Tandem_Repeat 440022 440058 51 + . . scaffold1093 TRF Tandem_Repeat 442370 442518 199 + . . scaffold1093 TRF Tandem_Repeat 443396 443553 158 + . . scaffold1093 TRF Tandem_Repeat 443535 444091 817 + . . scaffold1093 TRF Tandem_Repeat 444678 444777 107 + . . scaffold1093 GLEAN mRNA 445038 447248 1 - . ID=CGI_10019810; scaffold1093 GLEAN promoter 447249 448248 1 - . ID=CGI_10019810; scaffold1093 TRF Tandem_Repeat 450039 450418 391 + . . scaffold1093 WUBlastX LINE_L2 458906 458974 26 - . . scaffold1093 WUBlastX LINE_L2 458906 459013 23 - . . scaffold1093 WUBlastX LINE_L2 459030 459218 101 - . . scaffold1093 WUBlastX LINE_L2 459033 459326 55 - . . scaffold1093 WUBlastX LINE_L2 459033 459266 92 - . . scaffold1093 WUBlastX LTR_Ngaro 459459 459617 74 + . . scaffold1093 WUBlastX LTR_Ngaro 459547 459786 70 + . . scaffold1093 GLEAN promoter 466078 467077 0.984569 + . ID=CGI_10019811; scaffold1093 GLEAN mRNA 467078 469786 0.984569 + . ID=CGI_10019811; scaffold1093 TRF Tandem_Repeat 481992 482016 50 + . . scaffold1093 TRF Tandem_Repeat 497746 497793 96 + . . scaffold1093 TRF Tandem_Repeat 501989 502159 227 + . . scaffold1093 TRF Tandem_Repeat 503585 503798 293 + . . scaffold1093 TRF Tandem_Repeat 505347 505436 162 + . . scaffold1093 TRF Tandem_Repeat 514801 514887 86 + . . scaffold1093 WUBlastX LINE_CR1-L2 518001 518282 25 - . . scaffold1093 WUBlastX LINE_L2 518843 519313 39 - . . scaffold1093 WUBlastX LINE_L2 519054 519503 57 - . . scaffold1093 TRF Tandem_Repeat 522206 522264 111 + . . scaffold1093 GLEAN mRNA 530172 531421 0.976376 - . ID=CGI_10019812; scaffold1093 GLEAN promoter 531422 532421 0.976376 - . ID=CGI_10019812; scaffold1093 TRF Tandem_Repeat 531748 532342 915 + . . scaffold1093 TRF Tandem_Repeat 532789 533352 760 + . . scaffold1093 WUBlastX LINE_L1-Tx1 538580 539827 125 - . . scaffold1093 WUBlastX LINE_L1 539707 540486 207 - . . scaffold1093 WUBlastX LINE_L1 539827 540486 341 - . . scaffold1093 WUBlastX LINE_L1-Tx1 540339 541682 392 - . . scaffold1093 WUBlastX LINE_L1 540483 541922 64 - . . scaffold1093 GLEAN mRNA 542038 543921 0.59015 - . ID=CGI_10019813; scaffold1093 GLEAN promoter 543922 544921 0.59015 - . ID=CGI_10019813; scaffold1093 TRF Tandem_Repeat 550274 550908 903 + . . scaffold1093 TRF Tandem_Repeat 551443 552526 1306 + . . scaffold1093 TRF Tandem_Repeat 552586 552733 260 + . . scaffold1093 GLEAN mRNA 577677 583768 0.685607 - . ID=CGI_10019814; scaffold1093 GLEAN promoter 583769 584768 0.685607 - . ID=CGI_10019814; scaffold1093 GLEAN promoter 583877 584876 0.785399 + . ID=CGI_10019815; scaffold1093 GLEAN mRNA 584877 605886 0.785399 + . ID=CGI_10019815; scaffold1093 TRF Tandem_Repeat 590231 590258 56 + . . scaffold1093 TRF Tandem_Repeat 601715 601763 89 + . . scaffold1093 TRF Tandem_Repeat 606314 606338 50 + . . scaffold1093 GLEAN mRNA 609830 610503 1 - . ID=CGI_10019816; scaffold1093 GLEAN promoter 610504 611503 1 - . ID=CGI_10019816; scaffold1093 TRF Tandem_Repeat 613783 613898 198 + . . scaffold1094 TRF Tandem_Repeat 17541 17592 104 + . . scaffold1094 TRF Tandem_Repeat 35422 35483 79 + . . scaffold1094 TRF Tandem_Repeat 35425 35480 66 + . . scaffold1094 WUBlastX DNA_NOF? 35639 36301 184 - . . scaffold1094 WUBlastX DNA_NOF 35648 36712 54 - . . scaffold1094 WUBlastX DNA_MuDR 36611 36988 59 - . . scaffold1094 WUBlastX DNA_MuDR 36854 37780 78 - . . scaffold1094 WUBlastX DNA_MuDR 37124 38593 472 - . . scaffold1094 GLEAN promoter 38133 39132 0.999676 + . ID=CGI_10021808; scaffold1094 GLEAN mRNA 39133 55977 0.999676 + . ID=CGI_10021808; scaffold1094 TRF Tandem_Repeat 46058 46114 114 + . . scaffold1094 WUBlastX LTR_Ngaro 49071 49259 118 - . . scaffold1094 TRF Tandem_Repeat 57445 57482 51 + . . scaffold1094 TRF Tandem_Repeat 57643 58506 1348 + . . scaffold1094 GLEAN promoter 59520 60519 0.918332 + . ID=CGI_10021809; scaffold1094 GLEAN mRNA 60520 66589 0.918332 + . ID=CGI_10021809; scaffold1094 TRF Tandem_Repeat 62614 62735 74 + . . scaffold1094 TRF Tandem_Repeat 62636 62734 61 + . . scaffold1094 TRF Tandem_Repeat 71292 71470 168 + . . scaffold1094 TRF Tandem_Repeat 71292 71444 226 + . . scaffold1094 TRF Tandem_Repeat 73566 73600 70 + . . scaffold1094 TRF Tandem_Repeat 76094 76145 104 + . . scaffold1094 GLEAN mRNA 131923 132153 0.999984 - . ID=CGI_10021810; scaffold1094 GLEAN promoter 132154 133153 0.999984 - . ID=CGI_10021810; scaffold1094 GLEAN promoter 140551 141550 1 + . ID=CGI_10021811; scaffold1094 TRF Tandem_Repeat 140975 141018 88 + . . scaffold1094 GLEAN mRNA 141551 142570 1 + . ID=CGI_10021811; scaffold1094 GLEAN promoter 142681 143680 0.789427 + . ID=CGI_10021812; scaffold1094 GLEAN mRNA 143681 145682 0.789427 + . ID=CGI_10021812; scaffold1094 TRF Tandem_Repeat 150204 150292 60 + . . scaffold1094 GLEAN promoter 150510 151509 0.497592 + . ID=CGI_10021813; scaffold1094 TRF Tandem_Repeat 151213 151363 70 + . . scaffold1094 TRF Tandem_Repeat 151214 151364 131 + . . scaffold1094 TRF Tandem_Repeat 151215 151429 122 + . . scaffold1094 TRF Tandem_Repeat 151245 151429 133 + . . scaffold1094 GLEAN mRNA 151510 162898 0.497592 + . ID=CGI_10021813; scaffold1094 TRF Tandem_Repeat 155244 155280 58 + . . scaffold1094 GLEAN mRNA 163340 167894 0.650859 - . ID=CGI_10021814; scaffold1094 TRF Tandem_Repeat 164949 164992 88 + . . scaffold1094 TRF Tandem_Repeat 166299 166325 54 + . . scaffold1094 GLEAN promoter 167895 168894 0.650859 - . ID=CGI_10021814; scaffold1094 GLEAN promoter 169276 170275 0.994509 + . ID=CGI_10021815; scaffold1094 GLEAN mRNA 170276 182782 0.994509 + . ID=CGI_10021815; scaffold1094 TRF Tandem_Repeat 185198 185232 70 + . . scaffold1094 GLEAN promoter 206588 207587 0.989752 + . ID=CGI_10021816; scaffold1094 GLEAN mRNA 207588 241472 0.989752 + . ID=CGI_10021816; scaffold1094 TRF Tandem_Repeat 219302 219377 79 + . . scaffold1094 TRF Tandem_Repeat 221314 221664 639 + . . scaffold1094 WUBlastX LINE_RTE-X 230810 231313 83 + . . scaffold1094 WUBlastX LINE_RTE-X 230900 231433 138 + . . scaffold1094 TRF Tandem_Repeat 234091 234121 53 + . . scaffold1094 GLEAN promoter 240641 241640 0.912042 + . ID=CGI_10021817; scaffold1094 GLEAN mRNA 241641 256554 0.912042 + . ID=CGI_10021817; scaffold1094 GLEAN promoter 257780 258779 0.991626 + . ID=CGI_10021818; scaffold1094 GLEAN mRNA 258780 271982 0.991626 + . ID=CGI_10021818; scaffold1094 GLEAN mRNA 259443 264098 1 - . ID=CGI_10021819; scaffold1094 GLEAN promoter 264099 265098 1 - . ID=CGI_10021819; scaffold1094 GLEAN mRNA 274336 281007 0.739331 - . ID=CGI_10021820; scaffold1094 TRF Tandem_Repeat 276431 276566 112 + . . scaffold1094 GLEAN promoter 281008 282007 0.739331 - . ID=CGI_10021820; scaffold1094 GLEAN mRNA 285338 286502 1 - . ID=CGI_10021822; scaffold1094 GLEAN promoter 286503 287502 1 - . ID=CGI_10021822; scaffold1094 GLEAN mRNA 309065 310439 1 - . ID=CGI_10021823; scaffold1094 GLEAN promoter 310440 311439 1 - . ID=CGI_10021823; scaffold1094 GLEAN mRNA 311416 320007 0.844234 - . ID=CGI_10021824; scaffold1094 GLEAN promoter 320008 321007 0.844234 - . ID=CGI_10021824; scaffold1094 GLEAN promoter 325615 326614 0.753948 + . ID=CGI_10021825; scaffold1094 GLEAN mRNA 326615 336360 0.753948 + . ID=CGI_10021825; scaffold1094 TRF Tandem_Repeat 336643 337850 1261 + . . scaffold1094 TRF Tandem_Repeat 341826 341886 86 + . . scaffold1094 GLEAN mRNA 343435 343794 0.448995 - . ID=CGI_10021826; scaffold1094 GLEAN promoter 343795 344794 0.448995 - . ID=CGI_10021826; scaffold1094 TRF Tandem_Repeat 366775 366820 92 + . . scaffold1094 GLEAN promoter 415692 416691 0.929979 + . ID=CGI_10021827; scaffold1094 GLEAN mRNA 416692 418772 0.929979 + . ID=CGI_10021827; scaffold1094 TRF Tandem_Repeat 427160 427433 188 + . . scaffold1094 TRF Tandem_Repeat 427203 427433 221 + . . scaffold1094 GLEAN mRNA 433287 437063 0.999586 - . ID=CGI_10021828; scaffold1094 TRF Tandem_Repeat 436859 436886 56 + . . scaffold1094 GLEAN promoter 437064 438063 0.999586 - . ID=CGI_10021828; scaffold1094 GLEAN promoter 441642 442641 0.933825 + . ID=CGI_10021829; scaffold1094 TRF Tandem_Repeat 441823 441919 133 + . . scaffold1094 GLEAN mRNA 442642 461374 0.933825 + . ID=CGI_10021829; scaffold1094 TRF Tandem_Repeat 446918 447032 74 + . . scaffold1094 GLEAN mRNA 465092 474471 0.999996 - . ID=CGI_10021830; scaffold1094 GLEAN promoter 474472 475471 0.999996 - . ID=CGI_10021830; scaffold1094 GLEAN promoter 475587 476586 0.982405 + . ID=CGI_10021831; scaffold1094 GLEAN mRNA 476587 483119 0.982405 + . ID=CGI_10021831; scaffold1094 TRF Tandem_Repeat 485221 485268 51 + . . scaffold1094 TRF Tandem_Repeat 485221 485271 57 + . . scaffold1094 TRF Tandem_Repeat 485222 485264 59 + . . scaffold1094 TRF Tandem_Repeat 485274 485965 1007 + . . scaffold1094 GLEAN mRNA 489684 490764 1 - . ID=CGI_10021832; scaffold1094 GLEAN promoter 490765 491764 1 - . ID=CGI_10021832; scaffold1094 GLEAN mRNA 499951 512295 0.99982 - . ID=CGI_10021833; scaffold1094 GLEAN promoter 506392 507391 0.999351 + . ID=CGI_10021834; scaffold1094 GLEAN mRNA 507392 514656 0.999351 + . ID=CGI_10021834; scaffold1094 TRF Tandem_Repeat 509683 509742 57 + . . scaffold1094 GLEAN promoter 512296 513295 0.99982 - . ID=CGI_10021833; scaffold1094 GLEAN promoter 513952 514951 0.995864 + . ID=CGI_10021836; scaffold1094 GLEAN mRNA 514906 543881 0.995846 - . ID=CGI_10021835; scaffold1094 GLEAN mRNA 514952 516535 0.995864 + . ID=CGI_10021836; scaffold1094 TRF Tandem_Repeat 522919 524539 1690 + . . scaffold1094 TRF Tandem_Repeat 522955 524539 1749 + . . scaffold1094 GLEAN promoter 543882 544881 0.995846 - . ID=CGI_10021835; scaffold1094 GLEAN mRNA 544071 548472 1 - . ID=CGI_10021837; scaffold1094 GLEAN promoter 548473 549472 1 - . ID=CGI_10021837; scaffold1094 TRF Tandem_Repeat 550197 550232 54 + . . scaffold1094 WUBlastX LTR_Gypsy 552136 552423 21 - . . scaffold1094 WUBlastX LTR_Copia 552492 552872 20 - . . scaffold1094 WUBlastX LTR_Copia 552495 552644 39 - . . scaffold1094 WUBlastX LTR_Copia 552546 552698 50 - . . scaffold1094 WUBlastX LTR_Gypsy 552552 552761 23 - . . scaffold1094 TRF Tandem_Repeat 580165 580200 63 + . . scaffold1094 TRF Tandem_Repeat 587527 588381 1130 + . . scaffold1094 TRF Tandem_Repeat 588385 588434 82 + . . scaffold1094 TRF Tandem_Repeat 588392 588438 76 + . . scaffold1094 WUBlastX LTR_Gypsy 588616 589203 108 + . . scaffold1094 WUBlastX LTR_Gypsy 588802 589575 145 + . . scaffold1094 WUBlastX LTR_Gypsy 589707 590147 151 + . . scaffold1094 WUBlastX LTR_Gypsy 589746 590411 100 + . . scaffold1094 WUBlastX LTR_Gypsy 589818 590213 215 + . . scaffold1094 WUBlastX LTR_Gypsy 590232 590504 31 + . . scaffold1094 WUBlastX LTR_Gypsy 590550 590627 21 + . . scaffold1094 WUBlastX LINE_CR1-L2 590828 591550 31 + . . scaffold1094 WUBlastX LINE_CR1 590990 591550 107 + . . scaffold1094 WUBlastX LTR_Gypsy 597695 598024 43 - . . scaffold1094 WUBlastX LTR_Gypsy 597782 598075 58 - . . scaffold1094 WUBlastX LTR_Gypsy 597845 598105 90 - . . scaffold1094 WUBlastX LTR_Gypsy 597908 598534 206 - . . scaffold1094 WUBlastX LTR_Gypsy 598037 598540 240 - . . scaffold1094 WUBlastX LTR_Gypsy 598522 598683 38 - . . scaffold1094 WUBlastX LTR_Gypsy 598576 598662 63 - . . scaffold1094 WUBlastX LTR_Gypsy 598641 598781 33 - . . scaffold1094 TRF Tandem_Repeat 606219 606272 90 + . . scaffold1094 GLEAN mRNA 609558 640373 0.531771 - . ID=CGI_10021838; scaffold1094 TRF Tandem_Repeat 609707 609757 68 + . . scaffold1094 TRF Tandem_Repeat 614488 615276 976 + . . scaffold1094 TRF Tandem_Repeat 616875 617555 887 + . . scaffold1094 TRF Tandem_Repeat 619884 620004 64 + . . scaffold1094 TRF Tandem_Repeat 619913 619989 52 + . . scaffold1094 WUBlastX LINE_L1-Tx1 624720 625223 140 + . . scaffold1094 WUBlastX LINE_L1-Tx1 625243 625359 64 + . . scaffold1094 TRF Tandem_Repeat 627319 627368 100 + . . scaffold1094 TRF Tandem_Repeat 627874 627917 63 + . . scaffold1094 TRF Tandem_Repeat 627948 628747 1013 + . . scaffold1094 TRF Tandem_Repeat 627948 628744 998 + . . scaffold1094 WUBlastX LINE_L1 629640 629921 40 + . . scaffold1094 WUBlastX LINE_L1-Tx1 629778 631334 444 + . . scaffold1094 WUBlastX LINE_L1-Tx1 630562 631674 87 + . . scaffold1094 WUBlastX LINE_L1-Tx1 631673 631864 34 + . . scaffold1094 WUBlastX LINE_L1 631673 631807 39 + . . scaffold1094 WUBlastX DNA_Kolobok-IS4 638093 638497 72 - . . scaffold1094 WUBlastX DNA_Kolobok-IS4 638954 639718 68 - . . scaffold1094 WUBlastX DNA_IS4EU 639356 639799 103 - . . scaffold1094 WUBlastX DNA_IS4EU 639356 639910 65 - . . scaffold1094 GLEAN promoter 640374 641373 0.531771 - . ID=CGI_10021838; scaffold1094 WUBlastX LINE_L2 645698 645739 21 + . . scaffold1094 WUBlastX LINE_I 646530 647321 68 + . . scaffold1094 WUBlastX LINE_RTE-X 646701 648317 688 + . . scaffold1094 WUBlastX LINE_RTE-X 647688 648458 167 + . . scaffold1094 TRF Tandem_Repeat 650420 650470 102 + . . scaffold1094 WUBlastX LINE_RTE-X 652244 652417 63 - . . scaffold1094 GLEAN promoter 652693 653692 0.999236 + . ID=CGI_10021839; scaffold1094 GLEAN mRNA 653693 668891 0.999236 + . ID=CGI_10021839; scaffold1094 GLEAN mRNA 660055 663729 1 - . ID=CGI_10021840; scaffold1094 WUBlastX DNA_hAT 660058 660246 229 - . . scaffold1094 WUBlastX DNA_hAT 660407 660637 257 - . . scaffold1094 WUBlastX DNA_hAT 661027 661164 151 - . . scaffold1094 WUBlastX DNA_hAT 661416 661610 171 - . . scaffold1094 WUBlastX DNA_hAT 661839 662120 124 - . . scaffold1094 WUBlastX DNA_hAT 661878 662102 273 - . . scaffold1094 WUBlastX DNA_hAT 662405 662617 299 - . . scaffold1094 WUBlastX DNA_hAT 662848 663012 170 - . . scaffold1094 WUBlastX DNA_hAT 663211 663729 703 - . . scaffold1094 GLEAN promoter 663730 664729 1 - . ID=CGI_10021840; scaffold1094 GLEAN promoter 668185 669184 1 + . ID=CGI_10021841; scaffold1094 GLEAN mRNA 669185 671448 1 + . ID=CGI_10021841; scaffold1094 GLEAN mRNA 672347 681488 0.999636 - . ID=CGI_10021842; scaffold1094 TRF Tandem_Repeat 676418 676939 857 + . . scaffold1094 GLEAN promoter 681489 682488 0.999636 - . ID=CGI_10021842; scaffold1094 GLEAN promoter 687604 688603 1 + . ID=CGI_10021843; scaffold1094 TRF Tandem_Repeat 688262 688294 66 + . . scaffold1094 GLEAN mRNA 688604 692852 1 + . ID=CGI_10021843; scaffold1094 TRF Tandem_Repeat 691404 691439 72 + . . scaffold1094 TRF Tandem_Repeat 692251 692295 90 + . . scaffold1094 TRF Tandem_Repeat 704531 704560 60 + . . scaffold1094 GLEAN promoter 708370 709369 0.979093 + . ID=CGI_10021844; scaffold1094 GLEAN mRNA 709370 713489 0.979093 + . ID=CGI_10021844; scaffold1095 WUBlastX LINE_Penelope 5762 5998 43 - . . scaffold1095 WUBlastX LINE_Penelope 5834 6148 59 - . . scaffold1095 WUBlastX LINE_Penelope 5846 6112 115 - . . scaffold1095 TRF Tandem_Repeat 6153 6189 65 + . . scaffold1095 TRF Tandem_Repeat 6400 6460 113 + . . scaffold1095 TRF Tandem_Repeat 7731 8130 422 + . . scaffold1095 TRF Tandem_Repeat 7744 8130 508 + . . scaffold1095 TRF Tandem_Repeat 7744 8130 503 + . . scaffold1096 GLEAN promoter 1 718 0.999259 + . ID=CGI_10006447; scaffold1096 GLEAN mRNA 719 9286 0.999259 + . ID=CGI_10006447; scaffold1096 TRF Tandem_Repeat 8966 8997 64 + . . scaffold1096 TRF Tandem_Repeat 9258 9699 683 + . . scaffold1096 GLEAN mRNA 12079 12897 0.828496 - . ID=CGI_10006448; scaffold1096 GLEAN promoter 12898 13897 0.828496 - . ID=CGI_10006448; scaffold1096 TRF Tandem_Repeat 13329 13353 50 + . . scaffold1096 GLEAN mRNA 16309 16473 0.999068 - . ID=CGI_10006449; scaffold1096 GLEAN promoter 16474 17473 0.999068 - . ID=CGI_10006449; scaffold1096 TRF Tandem_Repeat 20181 20233 106 + . . scaffold1096 WUBlastX LTR_Gypsy 30220 30555 35 + . . scaffold1096 WUBlastX LTR_Gypsy 30325 31716 181 + . . scaffold1096 WUBlastX LTR_Gypsy 30808 31656 233 + . . scaffold1096 WUBlastX LTR_Gypsy 31614 32096 472 + . . scaffold1096 GLEAN mRNA 34591 35251 0.999997 - . ID=CGI_10006451; scaffold1096 GLEAN promoter 35252 36251 0.999997 - . ID=CGI_10006451; scaffold1096 GLEAN promoter 37641 38640 1 + . ID=CGI_10006452; scaffold1096 GLEAN mRNA 38641 45083 1 + . ID=CGI_10006452; scaffold1096 TRF Tandem_Repeat 48544 48584 73 + . . scaffold1096 WUBlastX LINE_L1-Tx1 48994 49179 90 - . . scaffold1096 WUBlastX LINE_L1 49009 49257 44 - . . scaffold1096 WUBlastX LINE_L1-Tx1 49328 49612 52 - . . scaffold1096 WUBlastX LINE_L1-Tx1 49502 49648 23 - . . scaffold1096 WUBlastX LINE_L1-Tx1 49650 51119 714 - . . scaffold1096 WUBlastX LINE_L1-Tx1 51091 51540 106 - . . scaffold1096 WUBlastX LINE_L2 51780 51890 20 - . . scaffold1096 GLEAN promoter 60473 61472 0.788854 + . ID=CGI_10006453; scaffold1096 GLEAN mRNA 61473 82912 0.788854 + . ID=CGI_10006453; scaffold1096 WUBlastX LTR_Gypsy 66076 66705 128 - . . scaffold1096 WUBlastX LTR_Gypsy 66561 67166 525 - . . scaffold1096 WUBlastX LTR_Gypsy 67166 67405 102 - . . scaffold1096 WUBlastX LTR_Gypsy 67330 67506 61 - . . scaffold1096 WUBlastX LTR_Gypsy 68116 68997 157 - . . scaffold1096 TRF Tandem_Repeat 76822 76853 55 + . . scaffold1096 TRF Tandem_Repeat 77477 77516 80 + . . scaffold1096 TRF Tandem_Repeat 82935 82962 56 + . . scaffold1096 GLEAN promoter 87454 88453 0.915269 + . ID=CGI_10006454; scaffold1096 GLEAN mRNA 88454 89752 0.915269 + . ID=CGI_10006454; scaffold1096 GLEAN mRNA 94800 110889 0.688093 - . ID=CGI_10006455; scaffold1096 TRF Tandem_Repeat 100104 100173 122 + . . scaffold1096 TRF Tandem_Repeat 100110 100173 63 + . . scaffold1096 TRF Tandem_Repeat 100112 100173 73 + . . scaffold1096 TRF Tandem_Repeat 101788 101847 120 + . . scaffold1096 TRF Tandem_Repeat 108489 108543 83 + . . scaffold1096 TRF Tandem_Repeat 110637 110678 84 + . . scaffold1096 GLEAN promoter 110890 111889 0.688093 - . ID=CGI_10006455; scaffold1096 TRF Tandem_Repeat 114654 114759 63 + . . scaffold1096 TRF Tandem_Repeat 114654 114759 97 + . . scaffold1096 TRF Tandem_Repeat 117074 117113 71 + . . scaffold1096 TRF Tandem_Repeat 117509 117539 62 + . . scaffold1096 GLEAN promoter 126172 127171 0.984969 + . ID=CGI_10006456; scaffold1096 WUBlastX DNA_TcMar-Fot1 127013 127108 20 + . . scaffold1096 GLEAN mRNA 127172 128535 0.984969 + . ID=CGI_10006456; scaffold1096 WUBlastX DNA_TcMar-Fot1 127259 127393 71 + . . scaffold1096 WUBlastX DNA_TcMar-Fot1 127313 127426 51 + . . scaffold1096 TRF Tandem_Repeat 129254 129297 79 + . . scaffold1096 TRF Tandem_Repeat 137008 137054 94 + . . scaffold1096 GLEAN promoter 144775 145774 0.818675 + . ID=CGI_10006457; scaffold1096 GLEAN mRNA 145775 152376 0.818675 + . ID=CGI_10006457; scaffold1096 TRF Tandem_Repeat 147183 147232 100 + . . scaffold1096 TRF Tandem_Repeat 151253 151327 107 + . . scaffold1097 TRF Tandem_Repeat 1618 2000 568 + . . scaffold1097 TRF Tandem_Repeat 2102 2636 799 + . . scaffold1097 TRF Tandem_Repeat 5171 5208 58 + . . scaffold1097 GLEAN mRNA 5692 15631 0.624811 - . ID=CGI_10024506; scaffold1097 GLEAN promoter 15632 16631 0.624811 - . ID=CGI_10024506; scaffold1097 TRF Tandem_Repeat 15880 17201 1963 + . . scaffold1097 TRF Tandem_Repeat 17375 17881 581 + . . scaffold1097 TRF Tandem_Repeat 17400 17881 522 + . . scaffold1097 WUBlastX LINE_RTE-X 23239 23739 104 - . . scaffold1097 WUBlastX LINE_RTE-X 23368 23739 110 - . . scaffold1097 WUBlastX LINE_RTE-X 23727 24113 48 - . . scaffold1097 WUBlastX LINE_RTE-X 23847 24086 61 - . . scaffold1097 WUBlastX LINE_L2 23919 24878 104 - . . scaffold1097 WUBlastX LINE_L2 24096 24977 360 - . . scaffold1097 WUBlastX LINE_L2 30718 31359 166 - . . scaffold1097 WUBlastX LINE_CR1-L2 30721 31224 229 - . . scaffold1097 WUBlastX LINE_L2 30748 31521 103 - . . scaffold1097 TRF Tandem_Repeat 41321 41373 106 + . . scaffold1097 TRF Tandem_Repeat 41841 41897 114 + . . scaffold1097 TRF Tandem_Repeat 42592 42638 85 + . . scaffold1097 TRF Tandem_Repeat 49113 49183 90 + . . scaffold1097 TRF Tandem_Repeat 49390 49429 80 + . . scaffold1097 TRF Tandem_Repeat 50719 50750 64 + . . scaffold1097 TRF Tandem_Repeat 51029 51066 67 + . . scaffold1097 TRF Tandem_Repeat 51192 51216 50 + . . scaffold1097 TRF Tandem_Repeat 52092 52121 60 + . . scaffold1097 GLEAN promoter 52595 53594 0.932321 + . ID=CGI_10024507; scaffold1097 GLEAN mRNA 53595 56418 0.932321 + . ID=CGI_10024507; scaffold1097 TRF Tandem_Repeat 56465 56800 291 + . . scaffold1097 TRF Tandem_Repeat 56523 56843 255 + . . scaffold1097 TRF Tandem_Repeat 59247 60144 1119 + . . scaffold1097 TRF Tandem_Repeat 62848 62893 65 + . . scaffold1097 TRF Tandem_Repeat 64588 64671 98 + . . scaffold1097 WUBlastX LTR_Gypsy 65323 66384 326 - . . scaffold1097 WUBlastX LTR_Gypsy 66543 67304 139 - . . scaffold1097 WUBlastX LTR_Gypsy 66837 67193 151 - . . scaffold1097 WUBlastX LTR_Gypsy 67308 67370 51 - . . scaffold1097 WUBlastX LTR_Gypsy 67364 67789 262 - . . scaffold1097 WUBlastX LTR_Gypsy 67828 68682 176 - . . scaffold1097 WUBlastX LTR_Gypsy 68074 68406 177 - . . scaffold1097 GLEAN promoter 75553 76552 0.618241 + . ID=CGI_10024508; scaffold1097 GLEAN mRNA 76553 76978 0.618241 + . ID=CGI_10024508; scaffold1097 WUBlastX LTR_Gypsy 78824 79507 95 + . . scaffold1097 WUBlastX LTR_Gypsy 78899 79477 370 + . . scaffold1097 WUBlastX LTR_Gypsy 79522 79629 46 + . . scaffold1097 WUBlastX LTR_Gypsy 79555 79650 53 + . . scaffold1097 WUBlastX LTR_Gypsy 80212 80337 26 + . . scaffold1097 WUBlastX DNA_TcMar-Tc1 84243 84407 43 + . . scaffold1097 WUBlastX DNA_TcMar-Tc1 84326 84463 54 + . . scaffold1097 GLEAN mRNA 89329 89798 0.981129 - . ID=CGI_10024509; scaffold1097 GLEAN promoter 89799 90798 0.981129 - . ID=CGI_10024509; scaffold1097 TRF Tandem_Repeat 103935 103994 120 + . . scaffold1097 TRF Tandem_Repeat 119358 119395 60 + . . scaffold1097 GLEAN promoter 120872 121871 0.965913 + . ID=CGI_10024510; scaffold1097 GLEAN mRNA 121872 122183 0.965913 + . ID=CGI_10024510; scaffold1097 TRF Tandem_Repeat 122407 122442 72 + . . scaffold1097 TRF Tandem_Repeat 130884 130976 161 + . . scaffold1097 TRF Tandem_Repeat 137680 137744 121 + . . scaffold1097 TRF Tandem_Repeat 138888 139728 1093 + . . scaffold1097 TRF Tandem_Repeat 150761 150802 84 + . . scaffold1097 TRF Tandem_Repeat 152430 152470 55 + . . scaffold1097 WUBlastX LINE_L1-Tx1 154177 154662 78 + . . scaffold1097 WUBlastX LINE_L1-Tx1 154372 154662 215 + . . scaffold1097 WUBlastX LINE_L1 154387 154875 53 + . . scaffold1097 WUBlastX LINE_L1 154860 155156 32 + . . scaffold1097 WUBlastX LINE_L1-Tx1 155218 155565 62 + . . scaffold1097 WUBlastX LINE_L1 155302 155592 104 + . . scaffold1097 WUBlastX LINE_L1-Tx1 155308 155655 60 + . . scaffold1097 WUBlastX LINE_L2 164163 164972 109 - . . scaffold1097 WUBlastX DNA_TcMar-Marin 165334 165447 41 - . . scaffold1097 WUBlastX DNA_TcMar-Marin 165343 165591 39 - . . scaffold1097 TRF Tandem_Repeat 170306 170350 90 + . . scaffold1097 TRF Tandem_Repeat 176199 176249 102 + . . scaffold1097 TRF Tandem_Repeat 176359 176406 96 + . . scaffold1097 WUBlastX RC_Helitron 184080 184361 74 - . . scaffold1097 WUBlastX RC_Helitron 184155 185522 50 - . . scaffold1097 WUBlastX RC_Helitron 184173 184640 100 - . . scaffold1097 WUBlastX RC_Helitron 184173 184745 67 - . . scaffold1097 WUBlastX RC_Helitron 185184 185534 74 - . . scaffold1097 WUBlastX DNA_Helitron 186002 186361 32 - . . scaffold1097 WUBlastX RC_Helitron 186369 186608 62 - . . scaffold1097 TRF Tandem_Repeat 191478 191540 117 + . . scaffold1097 WUBlastX LINE_CR1-L2 191768 192256 107 + . . scaffold1097 WUBlastX LINE_L2 191855 192262 160 + . . scaffold1097 WUBlastX LINE_CR1-L2 192294 192440 33 + . . scaffold1097 TRF Tandem_Repeat 193772 193846 150 + . . scaffold1097 WUBlastX LINE_L2 194885 195616 123 + . . scaffold1097 WUBlastX LINE_L2 195143 195676 268 + . . scaffold1097 WUBlastX LINE_CR1 195209 195886 114 + . . scaffold1097 WUBlastX LINE_CR1 195209 196270 51 + . . scaffold1097 WUBlastX LINE_CR1-L2 195212 195784 166 + . . scaffold1097 WUBlastX LINE_CR1 195807 195992 53 + . . scaffold1097 WUBlastX LINE_L2 196064 196435 38 + . . scaffold1097 TRF Tandem_Repeat 202312 202345 50 + . . scaffold1097 TRF Tandem_Repeat 216388 216448 104 + . . scaffold1097 TRF Tandem_Repeat 216497 217740 1610 + . . scaffold1097 GLEAN mRNA 218443 223886 0.999438 - . ID=CGI_10024511; scaffold1097 GLEAN promoter 223887 224886 0.999438 - . ID=CGI_10024511; scaffold1097 GLEAN mRNA 224191 235119 0.686153 - . ID=CGI_10024512; scaffold1097 TRF Tandem_Repeat 231823 231858 72 + . . scaffold1097 WUBlastX LINE_L1-Tx1 232022 232330 24 - . . scaffold1097 WUBlastX LINE_L1-Tx1 232049 232303 30 - . . scaffold1097 GLEAN promoter 235120 236119 0.686153 - . ID=CGI_10024512; scaffold1097 WUBlastX LINE_L1-Tx1 236758 236913 57 - . . scaffold1097 GLEAN mRNA 241765 242958 0.593329 - . ID=CGI_10024513; scaffold1097 GLEAN promoter 242959 243958 0.593329 - . ID=CGI_10024513; scaffold1097 GLEAN mRNA 252845 254104 0.59015 - . ID=CGI_10024514; scaffold1097 GLEAN promoter 254105 255104 0.59015 - . ID=CGI_10024514; scaffold1097 TRF Tandem_Repeat 258027 258078 104 + . . scaffold1097 TRF Tandem_Repeat 259673 259753 153 + . . scaffold1097 GLEAN mRNA 260744 264961 0.999351 - . ID=CGI_10024515; scaffold1097 GLEAN promoter 264176 265175 1 + . ID=CGI_10024516; scaffold1097 GLEAN promoter 264962 265961 0.999351 - . ID=CGI_10024515; scaffold1097 GLEAN mRNA 265176 274437 1 + . ID=CGI_10024516; scaffold1097 TRF Tandem_Repeat 271323 271366 88 + . . scaffold1097 GLEAN mRNA 275041 277670 0.991034 - . ID=CGI_10024517; scaffold1097 GLEAN promoter 276997 277996 1 + . ID=CGI_10024518; scaffold1097 GLEAN promoter 277671 278670 0.991034 - . ID=CGI_10024517; scaffold1097 GLEAN mRNA 277997 284078 1 + . ID=CGI_10024518; scaffold1097 TRF Tandem_Repeat 280676 280726 63 + . . scaffold1097 TRF Tandem_Repeat 287586 287682 162 + . . scaffold1097 GLEAN promoter 292962 293961 0.999676 + . ID=CGI_10024519; scaffold1097 GLEAN mRNA 293962 295946 0.999676 + . ID=CGI_10024519; scaffold1097 TRF Tandem_Repeat 298799 298872 139 + . . scaffold1097 TRF Tandem_Repeat 300634 300673 80 + . . scaffold1097 TRF Tandem_Repeat 307536 307590 110 + . . scaffold1097 TRF Tandem_Repeat 309654 311441 1801 + . . scaffold1097 TRF Tandem_Repeat 309654 311441 1778 + . . scaffold1097 TRF Tandem_Repeat 313821 313845 50 + . . scaffold1097 GLEAN promoter 317728 318727 1 + . ID=CGI_10024520; scaffold1097 GLEAN mRNA 318728 324921 1 + . ID=CGI_10024520; scaffold1097 TRF Tandem_Repeat 329230 329352 76 + . . scaffold1097 TRF Tandem_Repeat 329237 329351 99 + . . scaffold1097 TRF Tandem_Repeat 329273 329339 53 + . . scaffold1097 TRF Tandem_Repeat 330073 330153 60 + . . scaffold1097 GLEAN promoter 330928 331927 0.591609 + . ID=CGI_10024521; scaffold1097 GLEAN mRNA 331928 332792 0.591609 + . ID=CGI_10024521; scaffold1097 GLEAN promoter 337125 338124 1 + . ID=CGI_10024522; scaffold1097 GLEAN mRNA 338125 339773 1 + . ID=CGI_10024522; scaffold1097 TRF Tandem_Repeat 339952 340012 113 + . . scaffold1097 GLEAN promoter 340329 341328 0.869647 + . ID=CGI_10024523; scaffold1097 GLEAN mRNA 341329 347311 0.869647 + . ID=CGI_10024523; scaffold1097 TRF Tandem_Repeat 343727 343759 57 + . . scaffold1097 GLEAN mRNA 350091 356792 1 - . ID=CGI_10024524; scaffold1097 TRF Tandem_Repeat 351463 351510 96 + . . scaffold1097 TRF Tandem_Repeat 352414 352449 72 + . . scaffold1097 GLEAN promoter 356793 357792 1 - . ID=CGI_10024524; scaffold1097 TRF Tandem_Repeat 361478 361524 58 + . . scaffold1097 TRF Tandem_Repeat 361481 361529 53 + . . scaffold1097 GLEAN promoter 371364 372363 0.739924 + . ID=CGI_10024525; scaffold1097 TRF Tandem_Repeat 372087 372127 82 + . . scaffold1097 GLEAN mRNA 372364 373180 0.739924 + . ID=CGI_10024525; scaffold1097 GLEAN promoter 376823 377822 0.996819 + . ID=CGI_10024526; scaffold1097 GLEAN mRNA 377823 381803 0.996819 + . ID=CGI_10024526; scaffold1097 TRF Tandem_Repeat 378626 378669 52 + . . scaffold1097 GLEAN mRNA 382332 389024 1 - . ID=CGI_10024527; scaffold1097 GLEAN promoter 389025 390024 1 - . ID=CGI_10024527; scaffold1097 GLEAN promoter 389711 390710 1 + . ID=CGI_10024528; scaffold1097 GLEAN mRNA 390711 397333 1 + . ID=CGI_10024528; scaffold1097 TRF Tandem_Repeat 390999 391517 921 + . . scaffold1097 GLEAN mRNA 400759 423931 0.739463 - . ID=CGI_10024529; scaffold1097 TRF Tandem_Repeat 403297 403338 50 + . . scaffold1097 TRF Tandem_Repeat 404535 405361 1219 + . . scaffold1097 WUBlastX LINE_L1 417022 417900 36 - . . scaffold1097 WUBlastX LINE_L1 417061 417765 139 - . . scaffold1097 GLEAN promoter 423166 424165 1 + . ID=CGI_10024530; scaffold1097 GLEAN promoter 423932 424931 0.739463 - . ID=CGI_10024529; scaffold1097 GLEAN mRNA 424166 436443 1 + . ID=CGI_10024530; scaffold1097 TRF Tandem_Repeat 440539 440611 51 + . . scaffold1097 GLEAN mRNA 441570 446385 0.999998 - . ID=CGI_10024531; scaffold1097 TRF Tandem_Repeat 441829 442594 1062 + . . scaffold1097 GLEAN promoter 446386 447385 0.999998 - . ID=CGI_10024531; scaffold1097 TRF Tandem_Repeat 446617 447411 1288 + . . scaffold1097 GLEAN promoter 453656 454655 0.999064 + . ID=CGI_10024532; scaffold1097 TRF Tandem_Repeat 454400 454432 66 + . . scaffold1097 GLEAN mRNA 454656 455165 0.999064 + . ID=CGI_10024532; scaffold1097 WUBlastX LTR_DIRS 455206 455355 20 + . . scaffold1097 WUBlastX LTR_DIRS 455378 455794 160 + . . scaffold1097 WUBlastX LTR_DIRS 456432 457013 133 + . . scaffold1097 WUBlastX LTR_DIRS 457019 457381 150 + . . scaffold1097 TRF Tandem_Repeat 464966 464996 62 + . . scaffold1097 TRF Tandem_Repeat 469697 469768 67 + . . scaffold1097 TRF Tandem_Repeat 471390 471439 100 + . . scaffold1097 TRF Tandem_Repeat 471824 471874 68 + . . scaffold1097 WUBlastX LTR_Gypsy 478677 478862 31 - . . scaffold1097 WUBlastX LTR_Gypsy 479388 480110 294 - . . scaffold1097 WUBlastX LTR_Gypsy 479505 480233 169 - . . scaffold1097 WUBlastX LTR_Gypsy-Cigr 479553 480110 360 - . . scaffold1097 WUBlastX LTR_Gypsy 480119 480607 66 - . . scaffold1097 WUBlastX LTR_Gypsy 480119 480514 101 - . . scaffold1097 WUBlastX LTR_Gypsy 480119 480427 157 - . . scaffold1097 WUBlastX LTR_Gypsy 480546 480689 20 - . . scaffold1097 WUBlastX LTR_Gypsy 480811 481101 28 - . . scaffold1097 WUBlastX LTR_Gypsy 481918 482328 56 - . . scaffold1097 TRF Tandem_Repeat 482948 483242 344 + . . scaffold1097 TRF Tandem_Repeat 485562 485602 64 + . . scaffold1097 TRF Tandem_Repeat 491274 491303 60 + . . scaffold1097 TRF Tandem_Repeat 496275 496318 88 + . . scaffold1097 TRF Tandem_Repeat 498891 498941 102 + . . scaffold1097 TRF Tandem_Repeat 508063 508145 166 + . . scaffold1097 TRF Tandem_Repeat 538092 538121 60 + . . scaffold1097 TRF Tandem_Repeat 543061 543147 158 + . . scaffold1097 GLEAN mRNA 543574 562900 0.504884 - . ID=CGI_10024533; scaffold1097 GLEAN promoter 557719 558718 1 + . ID=CGI_10024534; scaffold1097 GLEAN mRNA 558719 559942 1 + . ID=CGI_10024534; scaffold1097 GLEAN promoter 562901 563900 0.504884 - . ID=CGI_10024533; scaffold1097 GLEAN mRNA 566282 590466 0.579339 - . ID=CGI_10024535; scaffold1097 WUBlastX LTR_Ngaro 575649 575729 45 + . . scaffold1097 WUBlastX LTR_Ngaro 575785 576003 107 + . . scaffold1097 WUBlastX LTR_Ngaro 576231 576530 79 + . . scaffold1097 WUBlastX LTR_Ngaro 576359 577828 144 + . . scaffold1097 WUBlastX LTR_Ngaro 577004 577849 205 + . . scaffold1097 WUBlastX LTR_Ngaro 577862 578173 78 + . . scaffold1097 WUBlastX LTR_Ngaro 577982 578242 42 + . . scaffold1097 WUBlastX LTR_Ngaro 578318 578374 22 + . . scaffold1097 WUBlastX LTR_Ngaro 578431 578562 31 + . . scaffold1097 TRF Tandem_Repeat 582168 582214 58 + . . scaffold1097 WUBlastX LTR_Ngaro 586109 586276 21 + . . scaffold1097 WUBlastX LTR_Ngaro 586169 586243 46 + . . scaffold1097 WUBlastX LTR_Ngaro 586234 586599 71 + . . scaffold1097 WUBlastX DNA_TcMar-Tc1 590390 590668 56 - . . scaffold1097 WUBlastX DNA_TcMar-Tc1 590444 590665 62 - . . scaffold1097 GLEAN promoter 590467 591466 0.579339 - . ID=CGI_10024535; scaffold1097 GLEAN mRNA 592887 593231 1 - . ID=CGI_10024536; scaffold1097 GLEAN promoter 593232 594231 1 - . ID=CGI_10024536; scaffold1097 GLEAN mRNA 593933 602728 0.992407 - . ID=CGI_10024537; scaffold1097 GLEAN promoter 602729 603728 0.992407 - . ID=CGI_10024537; scaffold1097 TRF Tandem_Repeat 605794 605825 55 + . . scaffold1097 WUBlastX DNA_IS4EU 607124 607513 75 - . . scaffold1097 WUBlastX DNA_IS4EU 607190 607909 21 - . . scaffold1097 WUBlastX LINE_RTE-BovB 607521 607556 26 + . . scaffold1097 TRF Tandem_Repeat 608205 608260 75 + . . scaffold1097 TRF Tandem_Repeat 608207 608260 83 + . . scaffold1097 TRF Tandem_Repeat 608208 608259 77 + . . scaffold1097 WUBlastX LINE_RTE-BovB 608446 608739 210 + . . scaffold1097 WUBlastX LINE_RTE-BovB 608449 608808 71 + . . scaffold1097 WUBlastX LINE_RTE-BovB 608739 608840 58 + . . scaffold1097 WUBlastX LINE_RTE-BovB 608777 608914 35 + . . scaffold1097 TRF Tandem_Repeat 608920 608950 53 + . . scaffold1097 WUBlastX LINE_L2 612662 612925 64 + . . scaffold1097 WUBlastX LINE_L1-Tx1 613260 614012 146 + . . scaffold1097 WUBlastX LINE_L1-Tx1 614029 614286 68 + . . scaffold1097 WUBlastX LINE_L1-Tx1 614089 615066 196 + . . scaffold1097 WUBlastX LINE_L1-Tx1 614632 615075 266 + . . scaffold1097 WUBlastX LINE_L1 615065 615217 61 + . . scaffold1097 WUBlastX LINE_L1 615068 615280 34 + . . scaffold1097 WUBlastX LINE_L1-Tx1 615363 615584 41 + . . scaffold1097 WUBlastX LINE_L1 615880 615948 22 + . . scaffold1097 WUBlastX LTR_Ngaro 616086 616448 209 - . . scaffold1097 WUBlastX LTR_Ngaro 616104 616634 148 - . . scaffold1097 WUBlastX LINE_L1 618310 618525 62 + . . scaffold1097 GLEAN mRNA 618709 639231 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 621323 621364 84 + . . scaffold1097 TRF Tandem_Repeat 622657 622729 137 + . . scaffold1097 TRF Tandem_Repeat 623520 623652 221 + . . scaffold1097 TRF Tandem_Repeat 624451 624587 152 + . . scaffold1097 TRF Tandem_Repeat 632178 632226 73 + . . scaffold1097 TRF Tandem_Repeat 632185 632223 69 + . . scaffold1097 TRF Tandem_Repeat 634715 634770 112 + . . scaffold1097 TRF Tandem_Repeat 637129 637247 154 + . . scaffold1097 TRF Tandem_Repeat 637540 637713 348 + . . scaffold1097 GLEAN promoter 639232 640231 0.745797 - . ID=CGI_10024538; scaffold1097 TRF Tandem_Repeat 641128 641196 138 + . . scaffold1097 TRF Tandem_Repeat 641205 641432 235 + . . scaffold1097 TRF Tandem_Repeat 644192 644236 90 + . . scaffold1097 TRF Tandem_Repeat 644574 644618 90 + . . scaffold1097 TRF Tandem_Repeat 644894 644939 92 + . . scaffold1097 GLEAN promoter 660768 661767 1 + . ID=CGI_10024539; scaffold1097 GLEAN mRNA 661768 664456 1 + . ID=CGI_10024539; scaffold1097 GLEAN mRNA 667237 667587 0.649478 - . ID=CGI_10024540; scaffold1097 GLEAN promoter 667588 668587 0.649478 - . ID=CGI_10024540; scaffold1097 GLEAN promoter 670182 671181 0.811238 + . ID=CGI_10024541; scaffold1097 GLEAN mRNA 671182 687187 0.811238 + . ID=CGI_10024541; scaffold1097 TRF Tandem_Repeat 674405 674451 94 + . . scaffold1097 WUBlastX LINE_RTE-BovB 681329 681991 161 - . . scaffold1097 WUBlastX LINE_RTE-BovB 682060 682173 60 - . . scaffold1097 WUBlastX LINE_RTE-BovB 682176 682595 349 - . . scaffold1097 WUBlastX LINE_L1 682203 682691 111 - . . scaffold1097 WUBlastX LINE_RTE-BovB 682490 682747 61 - . . scaffold1097 WUBlastX LINE_L1 682613 682774 23 - . . scaffold1097 WUBlastX LINE_RTE-BovB 682786 683061 116 - . . scaffold1097 WUBlastX LINE_RTE-BovB 683079 683210 57 - . . scaffold1097 WUBlastX LINE_RTE-BovB 683153 683311 88 - . . scaffold1097 WUBlastX LINE_RTE-BovB 683183 683386 82 - . . scaffold1097 WUBlastX LINE_RTE-BovB 683186 683347 87 - . . scaffold1097 WUBlastX LINE_RTE-BovB 683204 683470 47 - . . scaffold1097 GLEAN mRNA 684510 718767 0.99504 - . ID=CGI_10024542; scaffold1097 TRF Tandem_Repeat 707828 707876 98 + . . scaffold1097 TRF Tandem_Repeat 707940 708002 126 + . . scaffold1097 WUBlastX LINE_RTE-BovB 712004 712180 84 + . . scaffold1097 WUBlastX LINE_RTE-BovB 712031 712192 114 + . . scaffold1097 WUBlastX LINE_RTE-BovB 712094 712612 318 + . . scaffold1097 WUBlastX LINE_RTE-BovB 712602 713060 482 + . . scaffold1097 WUBlastX LINE_RTE-BovB 713066 713845 452 + . . scaffold1097 WUBlastX LINE_RTE-BovB 713820 714500 673 + . . scaffold1097 TRF Tandem_Repeat 715849 715924 68 + . . scaffold1097 TRF Tandem_Repeat 715856 715914 63 + . . scaffold1097 TRF Tandem_Repeat 715856 715922 64 + . . scaffold1097 TRF Tandem_Repeat 715860 715921 61 + . . scaffold1097 WUBlastX LINE_RTE-X 717557 717940 22 - . . scaffold1097 WUBlastX LINE_RTE-X 717740 718000 102 - . . scaffold1097 WUBlastX LINE_RTE-X 718009 718314 105 - . . scaffold1097 GLEAN promoter 718768 719767 0.99504 - . ID=CGI_10024542; scaffold1097 GLEAN promoter 724050 725049 0.540728 + . ID=CGI_10024543; scaffold1097 GLEAN mRNA 725050 731918 0.540728 + . ID=CGI_10024543; scaffold1097 TRF Tandem_Repeat 727824 727867 88 + . . scaffold1097 TRF Tandem_Repeat 731471 731526 112 + . . scaffold1097 TRF Tandem_Repeat 733639 733970 375 + . . scaffold1097 TRF Tandem_Repeat 733672 733966 357 + . . scaffold1097 TRF Tandem_Repeat 736969 737016 96 + . . scaffold1097 GLEAN mRNA 743561 749233 0.99818 - . ID=CGI_10024544; scaffold1097 TRF Tandem_Repeat 746399 746431 57 + . . scaffold1097 GLEAN promoter 749234 750233 0.99818 - . ID=CGI_10024544; scaffold1097 GLEAN promoter 749808 750807 0.798572 + . ID=CGI_10024545; scaffold1097 GLEAN mRNA 750808 754643 0.798572 + . ID=CGI_10024545; scaffold1097 GLEAN mRNA 756945 759756 1 - . ID=CGI_10024546; scaffold1097 GLEAN promoter 759757 760756 1 - . ID=CGI_10024546; scaffold1097 GLEAN mRNA 763100 768695 1 - . ID=CGI_10024547; scaffold1097 TRF Tandem_Repeat 766018 767164 1630 + . . scaffold1097 TRF Tandem_Repeat 766018 766445 678 + . . scaffold1097 TRF Tandem_Repeat 766018 767164 1668 + . . scaffold1097 TRF Tandem_Repeat 766449 767164 1101 + . . scaffold1097 GLEAN promoter 768696 769695 1 - . ID=CGI_10024547; scaffold1097 GLEAN promoter 769282 770281 0.777738 + . ID=CGI_10024548; scaffold1097 GLEAN mRNA 770282 778205 0.777738 + . ID=CGI_10024548; scaffold1097 TRF Tandem_Repeat 772589 773413 1035 + . . scaffold1097 GLEAN mRNA 779240 786526 1 - . ID=CGI_10024549; scaffold1097 TRF Tandem_Repeat 781811 781877 127 + . . scaffold1097 TRF Tandem_Repeat 784459 784548 82 + . . scaffold1097 GLEAN promoter 786527 787526 1 - . ID=CGI_10024549; scaffold1097 TRF Tandem_Repeat 786814 786881 66 + . . scaffold1097 TRF Tandem_Repeat 787805 787868 55 + . . scaffold1097 TRF Tandem_Repeat 787819 787901 78 + . . scaffold1097 GLEAN promoter 795138 796137 1 + . ID=CGI_10024550; scaffold1097 GLEAN mRNA 796138 800546 1 + . ID=CGI_10024550; scaffold1097 WUBlastX LINE_RTE-X 796658 796750 41 + . . scaffold1097 WUBlastX LINE_RTE-X 796685 796759 46 + . . scaffold1097 WUBlastX LINE_RTE-X 796801 797208 20 + . . scaffold1097 WUBlastX LINE_RTE-X 796933 797088 26 + . . scaffold1097 WUBlastX LINE_RTE-X 796960 797088 51 + . . scaffold1097 WUBlastX LINE_RTE-X 796960 797379 22 + . . scaffold1097 WUBlastX LINE_RTE-X 797282 797473 30 + . . scaffold1097 WUBlastX LINE_RTE-X 797312 797470 56 + . . scaffold1097 WUBlastX LINE_RTE-X 797519 797710 30 + . . scaffold1097 WUBlastX LINE_RTE-X 797549 797707 56 + . . scaffold1097 WUBlastX LINE_RTE-X 797746 797946 22 + . . scaffold1097 WUBlastX LINE_RTE-X 797746 797889 44 + . . scaffold1097 GLEAN mRNA 800754 804623 0.99881 - . ID=CGI_10024551; scaffold1097 TRF Tandem_Repeat 803175 803354 330 + . . scaffold1097 GLEAN promoter 804624 805623 0.99881 - . ID=CGI_10024551; scaffold1097 TRF Tandem_Repeat 805556 805594 78 + . . scaffold1097 GLEAN promoter 810868 811867 0.981835 + . ID=CGI_10024552; scaffold1097 GLEAN mRNA 811868 813991 0.981835 + . ID=CGI_10024552; scaffold1097 GLEAN mRNA 815268 817535 1 - . ID=CGI_10024553; scaffold1097 GLEAN promoter 817536 818535 1 - . ID=CGI_10024553; scaffold1097 GLEAN promoter 818553 819552 0.99032 + . ID=CGI_10024554; scaffold1097 GLEAN mRNA 819553 821950 0.99032 + . ID=CGI_10024554; scaffold1097 TRF Tandem_Repeat 829983 830039 64 + . . scaffold1097 TRF Tandem_Repeat 829983 830039 64 + . . scaffold1097 TRF Tandem_Repeat 829983 830054 65 + . . scaffold1097 TRF Tandem_Repeat 836649 836777 99 + . . scaffold1097 TRF Tandem_Repeat 836649 836778 81 + . . scaffold1097 GLEAN promoter 847149 848148 0.999116 + . ID=CGI_10024555; scaffold1097 GLEAN mRNA 848149 863853 0.999116 + . ID=CGI_10024555; scaffold1097 TRF Tandem_Repeat 848317 848356 80 + . . scaffold1097 TRF Tandem_Repeat 854901 855442 684 + . . scaffold1097 TRF Tandem_Repeat 854901 855441 581 + . . scaffold1097 TRF Tandem_Repeat 857631 857835 158 + . . scaffold1097 TRF Tandem_Repeat 857652 857831 112 + . . scaffold1097 WUBlastX LTR_Gypsy 860173 860310 23 + . . scaffold1097 WUBlastX LTR_Gypsy 860522 860620 22 + . . scaffold1097 WUBlastX LTR_Gypsy 860531 860614 23 + . . scaffold1097 WUBlastX LTR_Gypsy 860831 861721 293 + . . scaffold1097 WUBlastX LTR_Gypsy 861518 861784 102 + . . scaffold1097 WUBlastX LTR_Gypsy 861771 862169 123 + . . scaffold1097 WUBlastX LTR_Gypsy 861771 862253 68 + . . scaffold1097 WUBlastX LTR_Gypsy 862264 862935 133 + . . scaffold1097 WUBlastX LTR_Gypsy 862384 862938 162 + . . scaffold1097 WUBlastX LTR_Gypsy-Cigr 862480 863040 137 + . . scaffold1097 WUBlastX LTR_Gypsy 862480 863232 123 + . . scaffold1097 WUBlastX LTR_Gypsy 862489 862953 165 + . . scaffold1097 WUBlastX LTR_Gypsy 863298 863597 20 + . . scaffold1097 WUBlastX LTR_Gypsy 863337 863507 37 + . . scaffold1097 TRF Tandem_Repeat 865419 865457 69 + . . scaffold1097 GLEAN promoter 867082 868081 0.999675 + . ID=CGI_10024556; scaffold1097 GLEAN mRNA 868082 874075 0.999675 + . ID=CGI_10024556; scaffold1097 TRF Tandem_Repeat 873907 873948 84 + . . scaffold1097 GLEAN promoter 875683 876682 1 + . ID=CGI_10024557; scaffold1097 GLEAN mRNA 876683 882417 1 + . ID=CGI_10024557; scaffold1097 TRF Tandem_Repeat 878456 878523 136 + . . scaffold1097 TRF Tandem_Repeat 880371 880517 125 + . . scaffold1097 TRF Tandem_Repeat 880808 881508 955 + . . scaffold1097 TRF Tandem_Repeat 882832 882930 101 + . . scaffold1097 GLEAN promoter 885726 886725 0.772086 + . ID=CGI_10024558; scaffold1097 GLEAN mRNA 886726 891479 0.772086 + . ID=CGI_10024558; scaffold1097 WUBlastX LTR_Ngaro 902118 902561 157 - . . scaffold1097 WUBlastX LTR_Ngaro 902549 902725 99 - . . scaffold1097 TRF Tandem_Repeat 921693 921735 52 + . . scaffold1097 TRF Tandem_Repeat 921694 921727 52 + . . scaffold1097 WUBlastX LTR_DIRS 938027 938326 41 - . . scaffold1097 TRF Tandem_Repeat 939153 939187 70 + . . scaffold1097 TRF Tandem_Repeat 939187 939224 76 + . . scaffold1097 GLEAN promoter 944675 945674 0.999999 + . ID=CGI_10024559; scaffold1097 GLEAN mRNA 945675 947397 0.999999 + . ID=CGI_10024559; scaffold1098 TRF Tandem_Repeat 2016 2935 1102 + . . scaffold1098 GLEAN promoter 3863 4862 0.988441 + . ID=CGI_10010793; scaffold1098 TRF Tandem_Repeat 4315 4356 59 + . . scaffold1098 GLEAN mRNA 4863 19766 0.988441 + . ID=CGI_10010793; scaffold1098 TRF Tandem_Repeat 8886 8910 50 + . . scaffold1098 TRF Tandem_Repeat 17695 18844 331 + . . scaffold1098 TRF Tandem_Repeat 17695 18840 325 + . . scaffold1098 TRF Tandem_Repeat 18615 18844 122 + . . scaffold1098 TRF Tandem_Repeat 19241 19300 93 + . . scaffold1098 TRF Tandem_Repeat 19958 20192 158 + . . scaffold1098 TRF Tandem_Repeat 19969 20062 98 + . . scaffold1098 TRF Tandem_Repeat 20075 20193 100 + . . scaffold1098 GLEAN mRNA 23196 27602 1 - . ID=CGI_10010794; scaffold1098 GLEAN promoter 27603 28602 1 - . ID=CGI_10010794; scaffold1098 TRF Tandem_Repeat 43049 43098 100 + . . scaffold1098 WUBlastX LINE_L2 47544 48014 48 + . . scaffold1098 WUBlastX LINE_L1-Tx1 49192 49629 223 + . . scaffold1098 WUBlastX LINE_L1 49593 49766 31 + . . scaffold1098 WUBlastX LINE_L1 49664 49972 81 + . . scaffold1098 WUBlastX LINE_L1-Tx1 49766 50776 202 + . . scaffold1098 WUBlastX LINE_L1-Tx1 50619 51059 218 + . . scaffold1098 WUBlastX LINE_L1-Tx1 50691 51872 127 + . . scaffold1098 WUBlastX LINE_L1-Tx1 51384 52031 111 + . . scaffold1098 WUBlastX LINE_R2 52187 52390 22 + . . scaffold1098 WUBlastX LINE_L1-Tx1 52416 52685 44 + . . scaffold1098 WUBlastX LINE_L1 52431 52634 50 + . . scaffold1098 WUBlastX LINE_L1-Tx1 52739 53194 61 + . . scaffold1098 GLEAN mRNA 56507 72093 1 - . ID=CGI_10010795; scaffold1098 WUBlastX LTR_Pao 70554 70937 23 + . . scaffold1098 WUBlastX LTR_Pao 70635 70973 109 + . . scaffold1098 WUBlastX LTR_Pao 71145 71708 270 + . . scaffold1098 TRF Tandem_Repeat 71922 71953 55 + . . scaffold1098 GLEAN promoter 72094 73093 1 - . ID=CGI_10010795; scaffold1098 TRF Tandem_Repeat 73494 73581 153 + . . scaffold1098 TRF Tandem_Repeat 73494 73580 147 + . . scaffold1098 TRF Tandem_Repeat 100759 100810 104 + . . scaffold1098 TRF Tandem_Repeat 101727 101842 117 + . . scaffold1098 TRF Tandem_Repeat 101749 101976 170 + . . scaffold1098 TRF Tandem_Repeat 101771 101988 220 + . . scaffold1098 TRF Tandem_Repeat 107051 107888 1268 + . . scaffold1098 TRF Tandem_Repeat 109041 109107 116 + . . scaffold1098 TRF Tandem_Repeat 114566 114688 63 + . . scaffold1098 GLEAN mRNA 127164 127730 0.999983 - . ID=CGI_10010797; scaffold1098 WUBlastX DNA_Sola 127185 127313 26 - . . scaffold1098 WUBlastX DNA_Sola 127368 127688 53 - . . scaffold1098 GLEAN promoter 127731 128730 0.999983 - . ID=CGI_10010797; scaffold1098 WUBlastX LINE_L2 129125 129400 67 + . . scaffold1098 WUBlastX LINE_L2 129149 129475 51 + . . scaffold1098 WUBlastX LINE_L2 129151 129627 44 + . . scaffold1098 WUBlastX LINE_L2 129161 129367 72 + . . scaffold1098 WUBlastX LINE_L2 136762 137061 86 + . . scaffold1098 TRF Tandem_Repeat 143544 143608 94 + . . scaffold1098 TRF Tandem_Repeat 145045 145087 59 + . . scaffold1098 TRF Tandem_Repeat 145462 145512 57 + . . scaffold1098 WUBlastX LTR_DIRS 150747 151052 28 - . . scaffold1098 WUBlastX LTR_DIRS 150822 150971 68 - . . scaffold1098 WUBlastX LTR_DIRS 150825 151052 53 - . . scaffold1098 WUBlastX LTR_DIRS 151031 151174 59 - . . scaffold1098 WUBlastX LTR_DIRS 151040 152029 57 - . . scaffold1098 WUBlastX LTR_DIRS 151604 152056 80 - . . scaffold1098 WUBlastX LTR_DIRS 151604 152209 65 - . . scaffold1098 WUBlastX LTR_DIRS 152304 152435 35 - . . scaffold1098 WUBlastX LTR_Gypsy 153933 156248 903 - . . scaffold1098 WUBlastX LTR_Gypsy 154359 156242 1697 - . . scaffold1098 WUBlastX LTR_Gypsy 156248 156856 241 - . . scaffold1098 TRF Tandem_Repeat 156884 156931 71 + . . scaffold1098 TRF Tandem_Repeat 156884 156931 62 + . . scaffold1098 WUBlastX LTR_Gypsy 159292 159342 21 - . . scaffold1098 WUBlastX LTR_Gypsy 159367 160149 395 - . . scaffold1098 TRF Tandem_Repeat 188020 188086 89 + . . scaffold1098 TRF Tandem_Repeat 203651 203695 90 + . . scaffold1098 TRF Tandem_Repeat 213942 213991 61 + . . scaffold1098 TRF Tandem_Repeat 216182 216218 74 + . . scaffold1098 TRF Tandem_Repeat 217442 217529 106 + . . scaffold1098 TRF Tandem_Repeat 217636 217779 171 + . . scaffold1098 TRF Tandem_Repeat 219307 219364 98 + . . scaffold1098 GLEAN mRNA 223579 266249 0.353937 - . ID=CGI_10010798; scaffold1098 TRF Tandem_Repeat 230208 230241 68 + . . scaffold1098 WUBlastX DNA_TcMar-Marin 232841 232948 55 + . . scaffold1098 TRF Tandem_Repeat 242788 242851 128 + . . scaffold1098 TRF Tandem_Repeat 242849 242895 94 + . . scaffold1098 TRF Tandem_Repeat 246102 246189 90 + . . scaffold1098 TRF Tandem_Repeat 254147 254256 60 + . . scaffold1098 TRF Tandem_Repeat 259040 259096 114 + . . scaffold1098 WUBlastX DNA_TcMar-Tc1 264772 264939 71 + . . scaffold1098 WUBlastX DNA_TcMar-Tc1 264953 265330 153 + . . scaffold1098 GLEAN promoter 266250 267249 0.353937 - . ID=CGI_10010798; scaffold1098 TRF Tandem_Repeat 274646 274855 152 + . . scaffold11 WUBlastX DNA_Kolobok 527 808 104 + . . scaffold11 WUBlastX DNA_Kolobok 908 1192 117 + . . scaffold11 WUBlastX DNA_Kolobok 2173 2397 27 + . . scaffold11 WUBlastX DNA_Kolobok 2808 3143 55 + . . scaffold11 WUBlastX DNA_Kolobok 2817 3005 79 + . . scaffold11 WUBlastX DNA_Kolobok 3078 3314 103 + . . scaffold11 WUBlastX DNA_Kolobok 3420 3842 140 - . . scaffold11 WUBlastX DNA_Kolobok 3420 3923 116 - . . scaffold11 WUBlastX DNA_TcMar-Marin 9008 9103 41 - . . scaffold11 WUBlastX LTR_Gypsy 9859 10416 69 + . . scaffold11 TRF Tandem_Repeat 16382 16436 103 + . . scaffold11 WUBlastX LINE_CR1 26891 27214 21 + . . scaffold11 WUBlastX LINE_CR1-L2 26975 27217 29 + . . scaffold11 WUBlastX LINE_CR1 27074 27235 38 + . . scaffold11 WUBlastX LINE_CR1-L2 27226 27696 114 + . . scaffold11 WUBlastX LINE_CR1 27660 27767 81 + . . scaffold11 WUBlastX LINE_L2 27660 27839 70 + . . scaffold11 WUBlastX LINE_L2 28431 28877 36 + . . scaffold11 WUBlastX LINE_CR1-L2 28620 28871 104 + . . scaffold11 WUBlastX LINE_L2 28632 28940 29 + . . scaffold11 WUBlastX LINE_L2 30779 30946 76 + . . scaffold11 TRF Tandem_Repeat 31511 31543 57 + . . scaffold11 WUBlastX LTR_Ngaro 34086 35117 113 + . . scaffold11 WUBlastX LTR_Ngaro 35125 36678 996 + . . scaffold11 WUBlastX LTR_Ngaro 36660 37610 282 + . . scaffold11 WUBlastX DNA_Harbinger 48961 49074 64 - . . scaffold11 WUBlastX LINE_RTE-X 51739 51771 20 - . . scaffold11 WUBlastX LINE_L2 52639 52761 26 - . . scaffold11 WUBlastX LINE_RTE-X 52659 53195 54 - . . scaffold11 WUBlastX LINE_RTE-X 52746 53246 113 - . . scaffold11 WUBlastX LINE_RTE-X 53242 53439 73 - . . scaffold11 WUBlastX LINE_RTE-X 53242 53502 44 - . . scaffold11 WUBlastX DNA_Harbinger 54794 54970 74 - . . scaffold11 WUBlastX DNA_Harbinger 54851 54970 106 - . . scaffold11 WUBlastX DNA_Harbinger 57158 57430 62 - . . scaffold11 WUBlastX DNA_Harbinger 57224 57424 69 - . . scaffold11 GLEAN mRNA 61086 64490 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LTR_Gypsy 61353 61673 131 - . . scaffold11 WUBlastX LTR_Gypsy 61407 61811 78 - . . scaffold11 WUBlastX LTR_Gypsy-Cigr 61413 61685 186 - . . scaffold11 WUBlastX LTR_Gypsy 61413 61736 167 - . . scaffold11 WUBlastX LTR_Gypsy 61843 62247 73 - . . scaffold11 WUBlastX LTR_Gypsy 62876 63289 87 - . . scaffold11 GLEAN promoter 64491 65490 0.65426 - . ID=CGI_10015522; scaffold11 WUBlastX LINE_L2 67285 67473 40 - . . scaffold11 GLEAN promoter 72834 73833 0.999996 + . ID=CGI_10015523; scaffold11 GLEAN mRNA 73834 80997 0.999996 + . ID=CGI_10015523; scaffold11 GLEAN mRNA 85157 95349 0.881781 - . ID=CGI_10015524; scaffold11 GLEAN promoter 95350 96349 0.881781 - . ID=CGI_10015524; scaffold11 TRF Tandem_Repeat 106166 106206 82 + . . scaffold11 GLEAN promoter 117699 118698 0.839616 + . ID=CGI_10015525; scaffold11 GLEAN mRNA 118699 122200 0.839616 + . ID=CGI_10015525; scaffold11 TRF Tandem_Repeat 121777 121967 164 + . . scaffold11 GLEAN promoter 122323 123322 0.999113 + . ID=CGI_10015526; scaffold11 GLEAN mRNA 123323 129027 0.999113 + . ID=CGI_10015526; scaffold11 GLEAN mRNA 133200 151876 0.229634 - . ID=CGI_10015527; scaffold11 TRF Tandem_Repeat 139476 139531 66 + . . scaffold11 GLEAN promoter 151877 152876 0.229634 - . ID=CGI_10015527; scaffold11 GLEAN mRNA 159836 161752 0.999999 - . ID=CGI_10015528; scaffold11 GLEAN promoter 161753 162752 0.999999 - . ID=CGI_10015528; scaffold11 TRF Tandem_Repeat 166213 166256 88 + . . scaffold11 TRF Tandem_Repeat 166537 166577 82 + . . scaffold11 GLEAN promoter 173365 174364 1 + . ID=CGI_10015529; scaffold11 GLEAN mRNA 174365 174898 1 + . ID=CGI_10015529; scaffold11 WUBlastX LINE_Penelope 177836 178261 118 + . . scaffold11 WUBlastX LINE_Penelope 177935 178405 103 + . . scaffold11 TRF Tandem_Repeat 178747 178774 56 + . . scaffold11 WUBlastX LINE_Penelope 179682 179945 54 - . . scaffold11 WUBlastX LINE_Penelope 179739 179969 69 - . . scaffold11 WUBlastX LINE_Penelope 179775 179951 84 - . . scaffold11 WUBlastX LINE_Penelope 181024 181287 65 - . . scaffold11 WUBlastX LINE_Penelope 181033 181755 53 - . . scaffold11 WUBlastX LINE_Penelope 181740 181949 46 - . . scaffold11 WUBlastX LINE_Penelope 181791 181952 78 - . . scaffold11 WUBlastX LINE_Penelope 181800 181994 76 - . . scaffold11 GLEAN promoter 182230 183229 0.724988 + . ID=CGI_10015530; scaffold11 WUBlastX LINE_Penelope 182481 182618 23 - . . scaffold11 WUBlastX LINE_Penelope 183004 183120 21 - . . scaffold11 GLEAN mRNA 183230 196853 0.724988 + . ID=CGI_10015530; scaffold11 TRF Tandem_Repeat 199028 199071 61 + . . scaffold11 TRF Tandem_Repeat 204028 204071 70 + . . scaffold11 WUBlastX LINE_L1 204454 204504 34 - . . scaffold11 WUBlastX LINE_L1-Tx1 205044 207104 1297 - . . scaffold11 GLEAN promoter 212713 213712 0.679927 + . ID=CGI_10015532; scaffold11 GLEAN mRNA 213713 214193 0.679927 + . ID=CGI_10015532; scaffold11 TRF Tandem_Repeat 242037 242188 65 + . . scaffold11 WUBlastX LINE_CR1 244819 245490 261 + . . scaffold11 WUBlastX LINE_Jockey 245002 245727 26 + . . scaffold11 WUBlastX LINE_L1-Tx1 247089 248225 193 + . . scaffold11 WUBlastX LINE_L1-Tx1 247658 249478 467 + . . scaffold11 WUBlastX LINE_L1-Tx1 248246 249526 650 + . . scaffold11 WUBlastX LINE_L1 248246 249805 232 + . . scaffold11 WUBlastX LINE_L1 249647 249946 26 + . . scaffold11 WUBlastX LINE_L1-Tx1 249917 249973 23 + . . scaffold11 GLEAN mRNA 250550 254732 0.999084 - . ID=CGI_10015533; scaffold11 GLEAN promoter 254733 255732 0.999084 - . ID=CGI_10015533; scaffold11 GLEAN mRNA 263896 274321 0.975937 - . ID=CGI_10015534; scaffold11 TRF Tandem_Repeat 269027 269076 100 + . . scaffold11 TRF Tandem_Repeat 270763 270816 56 + . . scaffold11 TRF Tandem_Repeat 272428 273055 353 + . . scaffold11 GLEAN promoter 274322 275321 0.975937 - . ID=CGI_10015534; scaffold11 TRF Tandem_Repeat 277363 277567 155 + . . scaffold11 TRF Tandem_Repeat 277368 277551 163 + . . scaffold11 TRF Tandem_Repeat 277686 277742 114 + . . scaffold11 TRF Tandem_Repeat 283654 283698 90 + . . scaffold11 TRF Tandem_Repeat 287332 287384 106 + . . scaffold11 WUBlastX LINE_RTE-X 288332 288427 27 - . . scaffold11 WUBlastX LINE_RTE-X 288426 288620 60 - . . scaffold11 WUBlastX LINE_RTE-X 288447 288665 22 - . . scaffold11 WUBlastX LINE_RTE-X 288471 288620 69 - . . scaffold11 TRF Tandem_Repeat 292553 292597 90 + . . scaffold11 GLEAN mRNA 302386 311373 0.734532 - . ID=CGI_10015535; scaffold11 TRF Tandem_Repeat 307287 307328 66 + . . scaffold11 TRF Tandem_Repeat 310670 310734 130 + . . scaffold11 GLEAN promoter 311374 312373 0.734532 - . ID=CGI_10015535; scaffold11 TRF Tandem_Repeat 311818 311861 88 + . . scaffold11 TRF Tandem_Repeat 312357 312394 76 + . . scaffold11 WUBlastX LINE_RTE-BovB 316703 317968 151 - . . scaffold11 WUBlastX LINE_RTE-X 316922 317980 483 - . . scaffold11 WUBlastX LINE_CR1 316994 318199 169 - . . scaffold11 GLEAN mRNA 319130 321112 0.659757 - . ID=CGI_10015536; scaffold11 GLEAN promoter 321113 322112 0.659757 - . ID=CGI_10015536; scaffold11 GLEAN mRNA 328320 330221 0.451446 - . ID=CGI_10015537; scaffold11 GLEAN promoter 330222 331221 0.451446 - . ID=CGI_10015537; scaffold11 TRF Tandem_Repeat 330399 330491 73 + . . scaffold11 TRF Tandem_Repeat 330464 330554 65 + . . scaffold11 GLEAN mRNA 337340 338908 0.450258 - . ID=CGI_10015538; scaffold11 GLEAN promoter 338909 339908 0.450258 - . ID=CGI_10015538; scaffold11 WUBlastX LINE_L2 354101 354322 89 - . . scaffold11 GLEAN mRNA 357238 372227 0.999676 - . ID=CGI_10015539; scaffold11 TRF Tandem_Repeat 360603 360930 503 + . . scaffold11 TRF Tandem_Repeat 363182 363777 946 + . . scaffold11 TRF Tandem_Repeat 368663 369047 452 + . . scaffold11 GLEAN promoter 371958 372957 0.988899 + . ID=CGI_10015540; scaffold11 GLEAN promoter 372228 373227 0.999676 - . ID=CGI_10015539; scaffold11 GLEAN mRNA 372958 381177 0.988899 + . ID=CGI_10015540; scaffold11 TRF Tandem_Repeat 377038 377094 80 + . . scaffold11 TRF Tandem_Repeat 377038 377091 65 + . . scaffold11 GLEAN promoter 396560 397559 1 + . ID=CGI_10015541; scaffold11 GLEAN mRNA 397560 399802 1 + . ID=CGI_10015541; scaffold11 TRF Tandem_Repeat 403353 403399 94 + . . scaffold11 TRF Tandem_Repeat 403724 403806 148 + . . scaffold11 TRF Tandem_Repeat 415733 416829 701 + . . scaffold11 GLEAN mRNA 417284 425868 0.715377 - . ID=CGI_10015542; scaffold11 TRF Tandem_Repeat 419958 421477 1890 + . . scaffold11 GLEAN promoter 425869 426868 0.715377 - . ID=CGI_10015542; scaffold11 TRF Tandem_Repeat 432198 432224 54 + . . scaffold110 TRF Tandem_Repeat 319 388 69 + . . scaffold110 TRF Tandem_Repeat 331 400 69 + . . scaffold110 TRF Tandem_Repeat 2689 2742 74 + . . scaffold110 GLEAN promoter 5546 6545 0.447313 + . ID=CGI_10008773; scaffold110 GLEAN mRNA 6546 12006 0.447313 + . ID=CGI_10008773; scaffold110 TRF Tandem_Repeat 7683 7860 287 + . . scaffold110 TRF Tandem_Repeat 12033 12496 251 + . . scaffold110 TRF Tandem_Repeat 12090 12486 296 + . . scaffold110 GLEAN mRNA 16204 31481 0.790606 - . ID=CGI_10008774; scaffold110 TRF Tandem_Repeat 27904 27991 167 + . . scaffold110 TRF Tandem_Repeat 29217 29254 76 + . . scaffold110 GLEAN promoter 31482 32481 0.790606 - . ID=CGI_10008774; scaffold110 TRF Tandem_Repeat 33918 33960 86 + . . scaffold110 GLEAN mRNA 38163 42294 0.99879 - . ID=CGI_10008775; scaffold110 TRF Tandem_Repeat 40232 40320 61 + . . scaffold110 TRF Tandem_Repeat 40294 40328 70 + . . scaffold110 GLEAN promoter 42295 43294 0.99879 - . ID=CGI_10008775; scaffold110 GLEAN mRNA 45430 60279 0.412633 - . ID=CGI_10008776; scaffold110 TRF Tandem_Repeat 54804 54861 82 + . . scaffold110 TRF Tandem_Repeat 56085 57333 1781 + . . scaffold110 GLEAN promoter 60280 61279 0.412633 - . ID=CGI_10008776; scaffold110 TRF Tandem_Repeat 66909 66937 58 + . . scaffold110 TRF Tandem_Repeat 68003 68046 88 + . . scaffold110 TRF Tandem_Repeat 74059 74101 86 + . . scaffold110 TRF Tandem_Repeat 85407 85442 72 + . . scaffold110 TRF Tandem_Repeat 89336 89380 90 + . . scaffold110 WUBlastX LINE_RTE-BovB 90845 91132 104 + . . scaffold110 WUBlastX LINE_RTE-BovB 91147 91347 85 + . . scaffold110 WUBlastX LINE_RTE-BovB 91332 91718 76 + . . scaffold110 WUBlastX LINE_RTE-BovB 91467 91718 93 + . . scaffold110 WUBlastX LINE_RTE-BovB 91470 91769 34 + . . scaffold110 TRF Tandem_Repeat 91778 91904 247 + . . scaffold110 WUBlastX LINE_RTE-BovB 91906 92334 101 + . . scaffold110 WUBlastX LINE_RTE-BovB 92099 92503 75 + . . scaffold110 TRF Tandem_Repeat 93515 93849 383 + . . scaffold110 GLEAN mRNA 100793 106705 0.558382 - . ID=CGI_10008777; scaffold110 GLEAN promoter 106706 107705 0.558382 - . ID=CGI_10008777; scaffold110 GLEAN mRNA 107811 114616 1 - . ID=CGI_10008778; scaffold110 GLEAN promoter 114312 115311 1 + . ID=CGI_10008779; scaffold110 GLEAN promoter 114617 115616 1 - . ID=CGI_10008778; scaffold110 TRF Tandem_Repeat 114677 114755 63 + . . scaffold110 GLEAN mRNA 115312 115557 1 + . ID=CGI_10008779; scaffold110 TRF Tandem_Repeat 117291 117332 84 + . . scaffold110 GLEAN promoter 128432 129431 0.774702 + . ID=CGI_10008780; scaffold110 GLEAN mRNA 129432 174946 0.774702 + . ID=CGI_10008780; scaffold110 TRF Tandem_Repeat 133833 133866 52 + . . scaffold110 TRF Tandem_Repeat 133834 133890 60 + . . scaffold110 TRF Tandem_Repeat 133834 133890 51 + . . scaffold110 TRF Tandem_Repeat 137015 137105 94 + . . scaffold110 GLEAN mRNA 145881 149494 0.722798 - . ID=CGI_10008781; scaffold110 TRF Tandem_Repeat 148456 148529 73 + . . scaffold110 TRF Tandem_Repeat 148456 148529 60 + . . scaffold110 GLEAN promoter 149495 150494 0.722798 - . ID=CGI_10008781; scaffold110 TRF Tandem_Repeat 155200 155244 90 + . . scaffold110 TRF Tandem_Repeat 159738 159779 75 + . . scaffold110 TRF Tandem_Repeat 170577 170696 188 + . . scaffold110 GLEAN promoter 177829 178828 0.733495 + . ID=CGI_10008782; scaffold110 GLEAN mRNA 178829 179113 0.733495 + . ID=CGI_10008782; scaffold110 TRF Tandem_Repeat 193832 193882 102 + . . scaffold110 TRF Tandem_Repeat 197300 197423 92 + . . scaffold110 TRF Tandem_Repeat 197474 197601 82 + . . scaffold110 TRF Tandem_Repeat 199103 199144 66 + . . scaffold110 TRF Tandem_Repeat 201392 201442 102 + . . scaffold110 TRF Tandem_Repeat 201767 201817 102 + . . scaffold110 TRF Tandem_Repeat 205654 205952 187 + . . scaffold110 TRF Tandem_Repeat 207282 207338 114 + . . scaffold1100 GLEAN mRNA 470 7813 0.889838 - . ID=CGI_10009423; scaffold1100 TRF Tandem_Repeat 1015 1046 64 + . . scaffold1100 TRF Tandem_Repeat 1162 1465 219 + . . scaffold1100 TRF Tandem_Repeat 1163 1465 285 + . . scaffold1100 TRF Tandem_Repeat 2370 2678 311 + . . scaffold1100 TRF Tandem_Repeat 2370 2678 236 + . . scaffold1100 GLEAN promoter 7814 8813 0.889838 - . ID=CGI_10009423; scaffold1100 GLEAN promoter 13552 14551 0.999803 + . ID=CGI_10009424; scaffold1100 GLEAN mRNA 14552 21125 0.999803 + . ID=CGI_10009424; scaffold1100 TRF Tandem_Repeat 16308 17264 1087 + . . scaffold1100 TRF Tandem_Repeat 16447 17264 997 + . . scaffold1100 TRF Tandem_Repeat 17481 18079 967 + . . scaffold1100 TRF Tandem_Repeat 17481 18079 905 + . . scaffold1100 TRF Tandem_Repeat 20494 20686 248 + . . scaffold1100 TRF Tandem_Repeat 24919 25282 468 + . . scaffold1100 GLEAN mRNA 26100 33596 0.988736 - . ID=CGI_10009425; scaffold1100 TRF Tandem_Repeat 26319 27091 994 + . . scaffold1100 TRF Tandem_Repeat 28144 28778 1055 + . . scaffold1100 TRF Tandem_Repeat 28144 28778 1180 + . . scaffold1100 TRF Tandem_Repeat 30683 30925 112 + . . scaffold1100 GLEAN promoter 33597 34596 0.988736 - . ID=CGI_10009425; scaffold1100 GLEAN promoter 33919 34918 0.9999 + . ID=CGI_10009426; scaffold1100 GLEAN mRNA 34919 38872 0.9999 + . ID=CGI_10009426; scaffold1100 WUBlastX LTR_Pao 38165 38740 54 + . . scaffold1100 TRF Tandem_Repeat 41701 41935 229 + . . scaffold1100 TRF Tandem_Repeat 48239 48513 331 + . . scaffold1100 TRF Tandem_Repeat 48540 48585 74 + . . scaffold1100 GLEAN mRNA 49490 54272 0.999992 - . ID=CGI_10009427; scaffold1100 TRF Tandem_Repeat 51428 51475 69 + . . scaffold1100 GLEAN promoter 54273 55272 0.999992 - . ID=CGI_10009427; scaffold1100 TRF Tandem_Repeat 56941 56990 100 + . . scaffold1100 TRF Tandem_Repeat 59990 60039 100 + . . scaffold1100 TRF Tandem_Repeat 81286 81411 216 + . . scaffold1100 WUBlastX DNA_Harbinger 81421 81759 71 - . . scaffold1100 WUBlastX DNA_Harbinger 81478 81765 123 - . . scaffold1100 WUBlastX LINE_L1-Tx1 85690 85992 22 + . . scaffold1100 WUBlastX LINE_L1 85744 86082 66 + . . scaffold1100 WUBlastX LINE_L1-Tx1 85744 86169 37 + . . scaffold1100 WUBlastX LINE_L1 85798 86088 67 + . . scaffold1100 WUBlastX DNA_TcMar-Fot1 89199 89642 174 + . . scaffold1100 WUBlastX DNA_TcMar-Fot1 89659 90408 382 + . . scaffold1100 WUBlastX DNA_TcMar-Fot1 89665 90762 338 + . . scaffold1100 GLEAN mRNA 94399 96036 0.989136 - . ID=CGI_10009428; scaffold1100 GLEAN promoter 96037 97036 0.989136 - . ID=CGI_10009428; scaffold1100 WUBlastX LTR_Gypsy 98671 98745 29 - . . scaffold1100 WUBlastX LTR_Gypsy 98683 98820 39 - . . scaffold1100 WUBlastX LTR_Gypsy 99185 99691 31 - . . scaffold1100 WUBlastX LTR_Gypsy 99200 99601 117 - . . scaffold1100 WUBlastX LTR_Gypsy 99665 99802 48 - . . scaffold1100 WUBlastX LTR_Gypsy 99668 99769 69 - . . scaffold1100 WUBlastX LTR_Gypsy 99760 99888 32 - . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 99760 100047 21 - . . scaffold1100 TRF Tandem_Repeat 102108 103187 1469 + . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 104328 104639 132 - . . scaffold1100 WUBlastX LTR_Gypsy 104343 104699 70 - . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 104710 104925 84 - . . scaffold1100 WUBlastX LTR_Gypsy 104843 104998 70 - . . scaffold1100 WUBlastX LTR_Gypsy 104843 104971 71 - . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 109593 110000 186 - . . scaffold1100 WUBlastX LTR_Gypsy 110000 110257 267 - . . scaffold1100 WUBlastX LTR_Gypsy 110209 110592 209 - . . scaffold1100 WUBlastX LTR_Gypsy 110604 111554 156 - . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 111147 111701 471 - . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 111692 113173 635 - . . scaffold1100 WUBlastX LTR_Gypsy 112994 113215 46 - . . scaffold1100 WUBlastX LTR_Gypsy 113009 113275 30 - . . scaffold1100 WUBlastX LTR_Gypsy-Cigr 113322 114005 183 - . . scaffold1100 GLEAN mRNA 121667 124220 0.539376 - . ID=CGI_10009429; scaffold1100 GLEAN promoter 124221 125220 0.539376 - . ID=CGI_10009429; scaffold1100 GLEAN mRNA 124308 124994 0.286737 - . ID=CGI_10009430; scaffold1100 GLEAN promoter 124995 125994 0.286737 - . ID=CGI_10009430; scaffold1100 GLEAN promoter 126262 127261 0.478919 + . ID=CGI_10009431; scaffold1100 GLEAN mRNA 127262 128773 0.478919 + . ID=CGI_10009431; scaffold1100 TRF Tandem_Repeat 130234 130410 86 + . . scaffold1100 TRF Tandem_Repeat 130234 130410 86 + . . scaffold1100 TRF Tandem_Repeat 130236 130410 93 + . . scaffold1100 GLEAN promoter 130407 131406 0.999676 + . ID=CGI_10009432; scaffold1100 GLEAN mRNA 131407 134329 0.999676 + . ID=CGI_10009432; scaffold1100 TRF Tandem_Repeat 131621 131674 108 + . . scaffold1100 GLEAN mRNA 138505 149745 0.999676 - . ID=CGI_10009433; scaffold1100 TRF Tandem_Repeat 148489 148533 90 + . . scaffold1100 GLEAN promoter 149124 150123 0.999929 + . ID=CGI_10009434; scaffold1100 GLEAN promoter 149746 150745 0.999676 - . ID=CGI_10009433; scaffold1100 GLEAN mRNA 150124 164271 0.999929 + . ID=CGI_10009434; scaffold1100 TRF Tandem_Repeat 153557 154634 1599 + . . scaffold1100 GLEAN mRNA 171226 174010 0.999999 - . ID=CGI_10009435; scaffold1100 GLEAN promoter 173681 174680 0.71922 + . ID=CGI_10009436; scaffold1100 GLEAN promoter 174011 175010 0.999999 - . ID=CGI_10009435; scaffold1100 GLEAN mRNA 174681 179724 0.71922 + . ID=CGI_10009436; scaffold1100 WUBlastX LINE_RTE-X 185110 185862 74 - . . scaffold1100 WUBlastX LINE_RTE-X 185227 188514 813 - . . scaffold1100 WUBlastX LINE_I 188302 188601 58 - . . scaffold1100 WUBlastX LINE_L1 188569 188775 125 - . . scaffold1100 GLEAN mRNA 190268 211434 0.999351 - . ID=CGI_10009438; scaffold1100 TRF Tandem_Repeat 202953 203014 99 + . . scaffold1100 GLEAN promoter 211435 212434 0.999351 - . ID=CGI_10009438; scaffold1100 TRF Tandem_Repeat 218582 218623 84 + . . scaffold1100 TRF Tandem_Repeat 228374 228423 100 + . . scaffold1101 GLEAN promoter 2462 3461 0.649145 + . ID=CGI_10023008; scaffold1101 GLEAN mRNA 3462 3731 0.649145 + . ID=CGI_10023008; scaffold1101 TRF Tandem_Repeat 30620 30658 78 + . . scaffold1101 GLEAN mRNA 30694 33720 0.999508 - . ID=CGI_10023009; scaffold1101 GLEAN promoter 33721 34720 0.999508 - . ID=CGI_10023009; scaffold1101 GLEAN promoter 34387 35386 0.981404 + . ID=CGI_10023010; scaffold1101 GLEAN mRNA 35387 43820 0.981404 + . ID=CGI_10023010; scaffold1101 TRF Tandem_Repeat 41807 41904 72 + . . scaffold1101 WUBlastX DNA_Harbinger 46536 46628 21 - . . scaffold1101 WUBlastX DNA_Harbinger 46553 46723 74 - . . scaffold1101 WUBlastX DNA_Harbinger 46586 46765 79 - . . scaffold1101 WUBlastX DNA_Harbinger 46717 47109 189 - . . scaffold1101 WUBlastX DNA_Harbinger 47761 48069 143 - . . scaffold1101 WUBlastX DNA_TcMar-Tc1 59065 59409 153 - . . scaffold1101 TRF Tandem_Repeat 96243 96281 51 + . . scaffold1101 WUBlastX LTR_DIRS 97610 97750 42 + . . scaffold1101 WUBlastX LTR_DIRS 97975 98859 70 + . . scaffold1101 WUBlastX LTR_DIRS 98125 98469 75 + . . scaffold1101 WUBlastX LTR_DIRS 98454 99650 97 + . . scaffold1101 WUBlastX LTR_DIRS 100510 100683 20 + . . scaffold1101 WUBlastX LTR_DIRS 100671 100889 71 + . . scaffold1101 WUBlastX LTR_DIRS? 100692 100982 51 + . . scaffold1101 WUBlastX LTR_DIRS 100898 101170 49 + . . scaffold1101 WUBlastX LTR_DIRS? 101161 101286 42 + . . scaffold1101 WUBlastX LTR_DIRS 101283 101339 31 + . . scaffold1101 GLEAN promoter 105548 106547 0.999676 + . ID=CGI_10023011; scaffold1101 GLEAN mRNA 106548 111932 0.999676 + . ID=CGI_10023011; scaffold1101 TRF Tandem_Repeat 113932 114143 171 + . . scaffold1101 TRF Tandem_Repeat 119368 119434 80 + . . scaffold1101 TRF Tandem_Repeat 119368 119432 94 + . . scaffold1101 TRF Tandem_Repeat 124337 124379 86 + . . scaffold1101 TRF Tandem_Repeat 124555 124605 102 + . . scaffold1101 TRF Tandem_Repeat 125116 125182 73 + . . scaffold1101 TRF Tandem_Repeat 127803 127849 94 + . . scaffold1101 GLEAN promoter 132534 133533 1 + . ID=CGI_10023012; scaffold1101 GLEAN mRNA 133534 135095 1 + . ID=CGI_10023012; scaffold1101 TRF Tandem_Repeat 135159 135198 80 + . . scaffold1101 GLEAN promoter 137900 138899 0.999997 + . ID=CGI_10023013; scaffold1101 GLEAN mRNA 138900 139785 0.999997 + . ID=CGI_10023013; scaffold1101 GLEAN promoter 140921 141920 0.479315 + . ID=CGI_10023014; scaffold1101 GLEAN mRNA 141921 154245 0.479315 + . ID=CGI_10023014; scaffold1101 TRF Tandem_Repeat 146323 146362 80 + . . scaffold1101 TRF Tandem_Repeat 146894 146928 70 + . . scaffold1101 WUBlastX LINE_RTE-X 148275 148484 50 - . . scaffold1101 WUBlastX LINE_RTE-X 148502 149179 223 - . . scaffold1101 WUBlastX LINE_RTE-X 149005 149589 139 - . . scaffold1101 WUBlastX LINE_RTE-X 149152 149430 165 - . . scaffold1101 WUBlastX LINE_RTE-X 149529 150512 257 - . . scaffold1101 WUBlastX LINE_RTE-X 149559 151016 204 - . . scaffold1101 WUBlastX LINE_L2 151037 151522 27 - . . scaffold1101 WUBlastX LINE_CR1 151151 151696 43 - . . scaffold1101 WUBlastX LINE_RTE-X 151166 151576 122 - . . scaffold1101 WUBlastX LINE_L1 151725 151877 64 - . . scaffold1101 TRF Tandem_Repeat 152987 153048 117 + . . scaffold1101 TRF Tandem_Repeat 153048 153084 56 + . . scaffold1101 TRF Tandem_Repeat 158549 158611 126 + . . scaffold1101 TRF Tandem_Repeat 158650 158694 81 + . . scaffold1101 TRF Tandem_Repeat 159433 159469 74 + . . scaffold1101 GLEAN promoter 159697 160696 0.74183 + . ID=CGI_10023015; scaffold1101 GLEAN mRNA 160697 170125 0.74183 + . ID=CGI_10023015; scaffold1101 GLEAN mRNA 161730 178883 0.711116 - . ID=CGI_10023016; scaffold1101 TRF Tandem_Repeat 165150 165179 60 + . . scaffold1101 TRF Tandem_Repeat 170297 170347 102 + . . scaffold1101 GLEAN promoter 172823 173822 0.999226 + . ID=CGI_10023017; scaffold1101 GLEAN mRNA 173823 178880 0.999226 + . ID=CGI_10023017; scaffold1101 TRF Tandem_Repeat 178044 178138 181 + . . scaffold1101 GLEAN promoter 178884 179883 0.711116 - . ID=CGI_10023016; scaffold1101 TRF Tandem_Repeat 179388 179433 92 + . . scaffold1101 TRF Tandem_Repeat 181118 181169 104 + . . scaffold1101 GLEAN promoter 183095 184094 1 + . ID=CGI_10023018; scaffold1101 GLEAN mRNA 184095 187896 1 + . ID=CGI_10023018; scaffold1101 TRF Tandem_Repeat 184677 184738 124 + . . scaffold1101 GLEAN mRNA 189004 191431 0.998797 - . ID=CGI_10023019; scaffold1101 GLEAN promoter 191432 192431 0.998797 - . ID=CGI_10023019; scaffold1101 GLEAN mRNA 192524 192769 0.999259 - . ID=CGI_10023020; scaffold1101 GLEAN promoter 192770 193769 0.999259 - . ID=CGI_10023020; scaffold1101 TRF Tandem_Repeat 194381 194412 64 + . . scaffold1101 TRF Tandem_Repeat 196866 196941 152 + . . scaffold1101 WUBlastX LINE_L1 223161 223406 57 - . . scaffold1101 TRF Tandem_Repeat 223900 224956 889 + . . scaffold1101 TRF Tandem_Repeat 236189 236238 59 + . . scaffold1101 WUBlastX LTR_Copia 239794 239850 25 - . . scaffold1101 WUBlastX LTR_Gypsy 239850 240587 494 - . . scaffold1101 WUBlastX LTR_Gypsy 240587 241240 421 - . . scaffold1101 WUBlastX LTR_Gypsy 241233 242027 860 - . . scaffold1101 WUBlastX LTR_Gypsy 241997 243259 707 - . . scaffold1101 WUBlastX LTR_Gypsy 243262 243666 297 - . . scaffold1101 WUBlastX DNA_Harbinger 254873 255052 37 + . . scaffold1101 WUBlastX DNA_Harbinger 254873 255094 30 + . . scaffold1101 WUBlastX DNA_Harbinger 255093 255317 166 + . . scaffold1101 WUBlastX LINE_CR1 264563 265051 20 + . . scaffold1101 WUBlastX LINE_L2 264737 265060 127 + . . scaffold1101 WUBlastX LINE_CR1 265066 265314 76 + . . scaffold1101 WUBlastX LINE_CR1 265066 265434 56 + . . scaffold1101 WUBlastX LINE_CR1 265066 265374 70 + . . scaffold1101 WUBlastX LINE_L2 265460 265570 35 + . . scaffold1101 WUBlastX LINE_CR1-L2 265481 265552 52 + . . scaffold1101 WUBlastX LINE_CR1-L2 265545 265724 36 + . . scaffold1101 TRF Tandem_Repeat 276076 276172 97 + . . scaffold1101 TRF Tandem_Repeat 276076 276171 101 + . . scaffold1101 TRF Tandem_Repeat 276086 276173 81 + . . scaffold1101 TRF Tandem_Repeat 276086 276173 81 + . . scaffold1101 GLEAN promoter 279638 280637 0.355682 + . ID=CGI_10023022; scaffold1101 GLEAN mRNA 280638 317719 0.355682 + . ID=CGI_10023022; scaffold1101 TRF Tandem_Repeat 289139 289197 84 + . . scaffold1101 TRF Tandem_Repeat 314987 315892 1110 + . . scaffold1101 TRF Tandem_Repeat 317224 317574 373 + . . scaffold1101 TRF Tandem_Repeat 317224 317574 397 + . . scaffold1101 WUBlastX LINE_L1 321232 321567 70 - . . scaffold1101 TRF Tandem_Repeat 322971 323015 74 + . . scaffold1101 WUBlastX LTR_Ngaro 324558 325535 415 - . . scaffold1101 WUBlastX LTR_Ngaro 325415 326440 612 - . . scaffold1101 WUBlastX DNA_Crypton 326823 327005 34 + . . scaffold1101 TRF Tandem_Repeat 327061 327123 119 + . . scaffold1101 WUBlastX DNA_Crypton 327321 327431 32 + . . scaffold1101 TRF Tandem_Repeat 330807 330848 59 + . . scaffold1101 TRF Tandem_Repeat 335308 335370 126 + . . scaffold1101 WUBlastX LINE_L2 338257 338913 136 - . . scaffold1101 WUBlastX LINE_L2 338323 338874 138 - . . scaffold1101 WUBlastX LINE_L2 338419 338880 199 - . . scaffold1101 WUBlastX LINE_L2 338919 340367 390 - . . scaffold1101 WUBlastX LINE_L2 338919 340124 521 - . . scaffold1101 TRF Tandem_Repeat 340837 340890 76 + . . scaffold1101 TRF Tandem_Repeat 340842 340887 76 + . . scaffold1101 TRF Tandem_Repeat 341060 342472 2477 + . . scaffold1101 TRF Tandem_Repeat 341060 342472 2494 + . . scaffold1101 TRF Tandem_Repeat 363798 363853 112 + . . scaffold1101 GLEAN promoter 365979 366978 0.569292 + . ID=CGI_10023023; scaffold1101 GLEAN mRNA 366979 390760 0.569292 + . ID=CGI_10023023; scaffold1101 WUBlastX LINE_CR1-L2 370711 370899 32 + . . scaffold1101 WUBlastX LINE_CR1-L2 370895 371110 42 + . . scaffold1101 TRF Tandem_Repeat 384328 384374 94 + . . scaffold1101 TRF Tandem_Repeat 391017 391058 84 + . . scaffold1101 WUBlastX LINE_RTE-BovB 394565 394663 25 + . . scaffold1101 WUBlastX LINE_Jockey 394568 394639 26 + . . scaffold1101 WUBlastX LINE_RTE-BovB 395343 395891 27 + . . scaffold1101 WUBlastX LINE_RTE-BovB 395436 395897 73 + . . scaffold1101 WUBlastX LINE_RTE-X 395508 396137 382 + . . scaffold1101 WUBlastX LINE_RTE-X 396089 397153 530 + . . scaffold1101 TRF Tandem_Repeat 404791 404841 102 + . . scaffold1101 TRF Tandem_Repeat 409812 409937 101 + . . scaffold1101 TRF Tandem_Repeat 410004 410080 75 + . . scaffold1101 TRF Tandem_Repeat 413153 413239 158 + . . scaffold1101 GLEAN mRNA 415643 426743 0.794475 - . ID=CGI_10023024; scaffold1101 TRF Tandem_Repeat 424563 424911 479 + . . scaffold1101 GLEAN promoter 426519 427518 1 + . ID=CGI_10023025; scaffold1101 GLEAN promoter 426744 427743 0.794475 - . ID=CGI_10023024; scaffold1101 TRF Tandem_Repeat 426828 426863 72 + . . scaffold1101 GLEAN mRNA 427519 433029 1 + . ID=CGI_10023025; scaffold1101 TRF Tandem_Repeat 432846 432903 109 + . . scaffold1101 GLEAN promoter 433810 434809 0.636664 + . ID=CGI_10023026; scaffold1101 GLEAN mRNA 434810 454131 0.636664 + . ID=CGI_10023026; scaffold1101 TRF Tandem_Repeat 435546 435575 60 + . . scaffold1101 TRF Tandem_Repeat 439028 439073 92 + . . scaffold1101 GLEAN mRNA 456759 459653 0.999998 - . ID=CGI_10023027; scaffold1101 GLEAN promoter 459654 460653 0.999998 - . ID=CGI_10023027; scaffold1101 TRF Tandem_Repeat 459823 459877 101 + . . scaffold1101 GLEAN promoter 460668 461667 0.989275 + . ID=CGI_10023028; scaffold1101 GLEAN mRNA 461668 466451 0.989275 + . ID=CGI_10023028; scaffold1101 TRF Tandem_Repeat 469117 469151 70 + . . scaffold1101 GLEAN mRNA 469353 474534 1 - . ID=CGI_10023029; scaffold1101 GLEAN promoter 473653 474652 0.660204 + . ID=CGI_10023030; scaffold1101 GLEAN promoter 474535 475534 1 - . ID=CGI_10023029; scaffold1101 GLEAN mRNA 474653 484991 0.660204 + . ID=CGI_10023030; scaffold1101 TRF Tandem_Repeat 489264 489292 58 + . . scaffold1101 TRF Tandem_Repeat 506722 506792 142 + . . scaffold1101 GLEAN promoter 520845 521844 0.859729 + . ID=CGI_10023031; scaffold1101 GLEAN mRNA 521845 536003 0.859729 + . ID=CGI_10023031; scaffold1101 TRF Tandem_Repeat 522888 522974 174 + . . scaffold1101 TRF Tandem_Repeat 523650 523692 70 + . . scaffold1101 TRF Tandem_Repeat 525502 525591 180 + . . scaffold1101 WUBlastX LINE_RTE-X 525636 526922 236 - . . scaffold1101 WUBlastX LINE_RTE-X 526248 526928 238 - . . scaffold1101 WUBlastX LINE_RTE-X 526934 527578 178 - . . scaffold1101 WUBlastX LINE_RTE-X 526937 527332 234 - . . scaffold1101 WUBlastX LINE_RTE-X 526940 527434 199 - . . scaffold1101 WUBlastX LINE_RTE-X 527647 528003 89 - . . scaffold1101 WUBlastX LINE_RTE-X 527659 528369 61 - . . scaffold1101 TRF Tandem_Repeat 533766 533801 72 + . . scaffold1101 GLEAN promoter 536182 537181 0.997138 + . ID=CGI_10023032; scaffold1101 GLEAN mRNA 537182 541543 0.997138 + . ID=CGI_10023032; scaffold1101 WUBlastX DNA_IS4EU 539358 540164 57 + . . scaffold1101 WUBlastX DNA_Kolobok-IS4 539583 540164 73 + . . scaffold1101 WUBlastX DNA_IS4EU 539772 540164 88 + . . scaffold1101 TRF Tandem_Repeat 540198 540264 125 + . . scaffold1101 WUBlastX DNA_IS4EU 540354 540479 37 + . . scaffold1101 TRF Tandem_Repeat 544653 544719 89 + . . scaffold1101 TRF Tandem_Repeat 558300 558374 150 + . . scaffold1101 TRF Tandem_Repeat 558372 558418 76 + . . scaffold1101 TRF Tandem_Repeat 562337 562502 318 + . . scaffold1101 TRF Tandem_Repeat 566810 566897 176 + . . scaffold1101 TRF Tandem_Repeat 577657 577726 131 + . . scaffold1101 TRF Tandem_Repeat 587989 588097 209 + . . scaffold1101 TRF Tandem_Repeat 619154 619199 74 + . . scaffold1101 TRF Tandem_Repeat 619783 619824 63 + . . scaffold1101 TRF Tandem_Repeat 619784 619824 55 + . . scaffold1101 TRF Tandem_Repeat 624294 624410 173 + . . scaffold1101 WUBlastX DNA_Kolobok-IS4 634253 634753 83 - . . scaffold1101 TRF Tandem_Repeat 636404 636499 192 + . . scaffold1101 TRF Tandem_Repeat 637616 637700 125 + . . scaffold1101 TRF Tandem_Repeat 639886 639950 130 + . . scaffold1101 TRF Tandem_Repeat 640407 640432 52 + . . scaffold1101 TRF Tandem_Repeat 641861 641908 60 + . . scaffold1101 TRF Tandem_Repeat 656349 656395 76 + . . scaffold1101 GLEAN promoter 660524 661523 0.639594 + . ID=CGI_10023033; scaffold1101 GLEAN mRNA 661524 680765 0.639594 + . ID=CGI_10023033; scaffold1101 TRF Tandem_Repeat 676508 676533 52 + . . scaffold1101 TRF Tandem_Repeat 677610 677634 50 + . . scaffold1101 TRF Tandem_Repeat 681125 681193 138 + . . scaffold1101 TRF Tandem_Repeat 689708 689773 123 + . . scaffold1101 TRF Tandem_Repeat 696048 696081 50 + . . scaffold1101 WUBlastX LINE_Penelope 696091 696330 40 + . . scaffold1101 WUBlastX LINE_Penelope 696151 696648 112 + . . scaffold1101 TRF Tandem_Repeat 699933 699994 106 + . . scaffold1101 TRF Tandem_Repeat 702478 702523 92 + . . scaffold1101 TRF Tandem_Repeat 703005 703090 86 + . . scaffold1101 TRF Tandem_Repeat 703021 703078 55 + . . scaffold1101 TRF Tandem_Repeat 704225 704275 93 + . . scaffold1101 TRF Tandem_Repeat 705846 705932 61 + . . scaffold1101 TRF Tandem_Repeat 705847 705925 54 + . . scaffold1101 TRF Tandem_Repeat 705928 706018 82 + . . scaffold1101 TRF Tandem_Repeat 713743 713797 101 + . . scaffold1101 WUBlastX LINE_L2 724626 724730 22 - . . scaffold1101 WUBlastX LINE_L2 724736 725056 173 - . . scaffold1101 WUBlastX LINE_L2 725034 725516 183 - . . scaffold1101 WUBlastX LINE_L2 725079 725609 89 - . . scaffold1101 TRF Tandem_Repeat 739987 740080 91 + . . scaffold1101 WUBlastX LTR_Ngaro 749278 749712 78 + . . scaffold1101 WUBlastX LTR_Ngaro 750000 750647 279 + . . scaffold1101 WUBlastX LTR_DIRS 756879 757265 256 + . . scaffold1101 WUBlastX LTR_DIRS 757255 758118 463 + . . scaffold1101 WUBlastX LTR_DIRS 758120 758518 181 + . . scaffold1101 WUBlastX LTR_DIRS 758344 758676 83 + . . scaffold1101 WUBlastX LTR_DIRS 758667 759269 267 + . . scaffold1101 GLEAN mRNA 761631 776871 0.966439 - . ID=CGI_10023034; scaffold1101 TRF Tandem_Repeat 770931 770962 64 + . . scaffold1101 GLEAN promoter 776872 777871 0.966439 - . ID=CGI_10023034; scaffold1101 TRF Tandem_Repeat 780254 780309 112 + . . scaffold1101 TRF Tandem_Repeat 810071 810190 116 + . . scaffold1102 GLEAN mRNA 1052 9701 1 - . ID=CGI_10001818; scaffold1102 GLEAN promoter 9702 10701 1 - . ID=CGI_10001818; scaffold1102 GLEAN mRNA 9722 29525 0.650712 - . ID=CGI_10001819; scaffold1102 GLEAN promoter 29526 30525 0.650712 - . ID=CGI_10001819; scaffold1103 WUBlastX LINE_L2 1844 2023 74 - . . scaffold1103 GLEAN mRNA 2927 17962 0.836195 - . ID=CGI_10004868; scaffold1103 WUBlastX LINE_L2 11747 11803 21 + . . scaffold1103 WUBlastX LINE_CR1 12507 12890 21 + . . scaffold1103 WUBlastX LINE_L2 12576 12944 43 + . . scaffold1103 WUBlastX LINE_L2 12648 12971 83 + . . scaffold1103 WUBlastX LINE_L2 12970 13848 448 + . . scaffold1103 WUBlastX LINE_L2 13836 14642 595 + . . scaffold1103 WUBlastX LINE_L2 14639 15520 457 + . . scaffold1103 GLEAN promoter 17963 18962 0.836195 - . ID=CGI_10004868; scaffold1103 TRF Tandem_Repeat 19641 19690 100 + . . scaffold1103 WUBlastX LTR_Ngaro 21693 22316 312 - . . scaffold1103 TRF Tandem_Repeat 22354 22392 78 + . . scaffold1103 TRF Tandem_Repeat 22460 22773 287 + . . scaffold1103 TRF Tandem_Repeat 22465 22808 287 + . . scaffold1103 TRF Tandem_Repeat 23021 23082 115 + . . scaffold1103 TRF Tandem_Repeat 24562 24618 51 + . . scaffold1103 GLEAN mRNA 24786 37142 0.791674 - . ID=CGI_10004869; scaffold1103 GLEAN promoter 37143 38142 0.791674 - . ID=CGI_10004869; scaffold1103 TRF Tandem_Repeat 37206 37323 162 + . . scaffold1103 GLEAN mRNA 38469 38672 0.999372 - . ID=CGI_10004870; scaffold1103 GLEAN promoter 38673 39672 0.999372 - . ID=CGI_10004870; scaffold1103 WUBlastX DNA_MuDR 44663 45691 299 - . . scaffold1103 WUBlastX DNA_MuDR 45398 45757 64 - . . scaffold1103 GLEAN mRNA 73688 78656 0.99172 - . ID=CGI_10004871; scaffold1103 GLEAN promoter 78657 79656 0.99172 - . ID=CGI_10004871; scaffold1103 GLEAN mRNA 81881 84625 0.999874 - . ID=CGI_10004872; scaffold1103 GLEAN promoter 84626 85625 0.999874 - . ID=CGI_10004872; scaffold1103 GLEAN promoter 92107 93106 0.728743 + . ID=CGI_10004873; scaffold1103 GLEAN mRNA 93107 105751 0.728743 + . ID=CGI_10004873; scaffold1103 TRF Tandem_Repeat 101428 101502 143 + . . scaffold1103 TRF Tandem_Repeat 103078 103110 66 + . . scaffold1103 TRF Tandem_Repeat 107994 108087 179 + . . scaffold1103 WUBlastX LTR_Ngaro 110043 110543 264 + . . scaffold1103 TRF Tandem_Repeat 110634 110718 149 + . . scaffold1103 TRF Tandem_Repeat 111448 111605 186 + . . scaffold1103 TRF Tandem_Repeat 111497 111605 146 + . . scaffold1104 GLEAN mRNA 110 1266 1 - . ID=CGI_10020348; scaffold1104 GLEAN promoter 1267 2266 1 - . ID=CGI_10020348; scaffold1104 GLEAN mRNA 2145 5262 0.63898 - . ID=CGI_10020349; scaffold1104 TRF Tandem_Repeat 2567 2666 96 + . . scaffold1104 GLEAN promoter 4383 5382 1 + . ID=CGI_10020350; scaffold1104 GLEAN promoter 5263 6262 0.63898 - . ID=CGI_10020349; scaffold1104 GLEAN mRNA 5383 9101 1 + . ID=CGI_10020350; scaffold1104 TRF Tandem_Repeat 10363 10654 174 + . . scaffold1104 TRF Tandem_Repeat 10365 10464 78 + . . scaffold1104 TRF Tandem_Repeat 11103 11314 143 + . . scaffold1104 TRF Tandem_Repeat 11105 11461 269 + . . scaffold1104 TRF Tandem_Repeat 11107 11461 247 + . . scaffold1104 TRF Tandem_Repeat 12557 12940 180 + . . scaffold1104 TRF Tandem_Repeat 12688 12898 168 + . . scaffold1104 TRF Tandem_Repeat 12736 12940 119 + . . scaffold1104 GLEAN promoter 14340 15339 0.534088 + . ID=CGI_10020351; scaffold1104 GLEAN mRNA 15340 24981 0.534088 + . ID=CGI_10020351; scaffold1104 TRF Tandem_Repeat 16515 16627 122 + . . scaffold1104 TRF Tandem_Repeat 16515 16626 163 + . . scaffold1104 TRF Tandem_Repeat 16515 16627 130 + . . scaffold1104 TRF Tandem_Repeat 22498 22690 242 + . . scaffold1104 TRF Tandem_Repeat 22498 22690 271 + . . scaffold1104 WUBlastX LTR_DIRS 27585 28514 558 - . . scaffold1104 WUBlastX LTR_DIRS 28397 29335 601 - . . scaffold1104 GLEAN promoter 31461 32460 1 + . ID=CGI_10020352; scaffold1104 GLEAN mRNA 32461 41054 1 + . ID=CGI_10020352; scaffold1104 GLEAN promoter 58457 59456 0.999673 + . ID=CGI_10020353; scaffold1104 GLEAN mRNA 59457 92250 0.999673 + . ID=CGI_10020353; scaffold1104 TRF Tandem_Repeat 74200 75387 1765 + . . scaffold1104 WUBlastX DNA_TcMar-Tc1 80158 81195 431 - . . scaffold1104 GLEAN mRNA 94892 123568 0.94941 - . ID=CGI_10020354; scaffold1104 TRF Tandem_Repeat 98869 98906 58 + . . scaffold1104 GLEAN promoter 104702 105701 1 + . ID=CGI_10020355; scaffold1104 GLEAN mRNA 105702 108862 1 + . ID=CGI_10020355; scaffold1104 GLEAN promoter 110746 111745 1 + . ID=CGI_10020356; scaffold1104 GLEAN mRNA 111746 113910 1 + . ID=CGI_10020356; scaffold1104 GLEAN promoter 123569 124568 0.94941 - . ID=CGI_10020354; scaffold1104 GLEAN mRNA 123653 128871 0.889923 - . ID=CGI_10020357; scaffold1104 TRF Tandem_Repeat 125412 125487 55 + . . scaffold1104 GLEAN promoter 128872 129871 0.889923 - . ID=CGI_10020357; scaffold1104 TRF Tandem_Repeat 130442 130493 86 + . . scaffold1104 TRF Tandem_Repeat 130497 130535 69 + . . scaffold1104 TRF Tandem_Repeat 130964 131106 128 + . . scaffold1104 GLEAN promoter 131822 132821 0.999675 + . ID=CGI_10020358; scaffold1104 GLEAN mRNA 132822 142361 0.999675 + . ID=CGI_10020358; scaffold1104 TRF Tandem_Repeat 135713 135779 134 + . . scaffold1104 TRF Tandem_Repeat 144350 144576 154 + . . scaffold1104 GLEAN promoter 147782 148781 0.999984 + . ID=CGI_10020359; scaffold1104 GLEAN mRNA 148782 149255 0.999984 + . ID=CGI_10020359; scaffold1104 TRF Tandem_Repeat 150357 150460 63 + . . scaffold1104 TRF Tandem_Repeat 157562 157608 94 + . . scaffold1104 TRF Tandem_Repeat 158788 158956 105 + . . scaffold1104 GLEAN promoter 159265 160264 1 + . ID=CGI_10020360; scaffold1104 GLEAN mRNA 160265 161158 1 + . ID=CGI_10020360; scaffold1104 GLEAN promoter 161897 162896 0.499418 + . ID=CGI_10020361; scaffold1104 GLEAN mRNA 162897 187197 0.499418 + . ID=CGI_10020361; scaffold1104 WUBlastX LINE_RTE-BovB 164224 164289 24 + . . scaffold1104 WUBlastX LINE_RTE-X 164239 165129 281 + . . scaffold1104 WUBlastX LINE_RTE-X 165090 165974 403 + . . scaffold1104 WUBlastX LINE_RTE-X 165952 167313 377 + . . scaffold1104 WUBlastX DNA_hAT-hATw 168249 168659 85 - . . scaffold1104 GLEAN mRNA 174223 178135 0.999676 - . ID=CGI_10020362; scaffold1104 GLEAN promoter 178136 179135 0.999676 - . ID=CGI_10020362; scaffold1104 GLEAN promoter 186746 187745 0.999826 + . ID=CGI_10020363; scaffold1104 TRF Tandem_Repeat 187387 187426 73 + . . scaffold1104 TRF Tandem_Repeat 187525 187569 90 + . . scaffold1104 GLEAN mRNA 187746 195530 0.999826 + . ID=CGI_10020363; scaffold1104 TRF Tandem_Repeat 200468 200513 92 + . . scaffold1104 WUBlastX LINE_R2-Hero 201158 201268 43 + . . scaffold1104 WUBlastX LINE_R2-Hero 201498 202022 38 + . . scaffold1104 WUBlastX LINE_R2-Hero 201667 202212 147 + . . scaffold1104 WUBlastX LINE_R2-Hero 201667 202608 106 + . . scaffold1104 WUBlastX LINE_R2-Hero 202570 203118 115 - . . scaffold1104 WUBlastX LINE_R2-Hero 202744 203118 142 - . . scaffold1104 WUBlastX LINE_R2-Hero 203132 203260 42 - . . scaffold1104 WUBlastX LINE_R2-Hero 203376 204122 207 - . . scaffold1104 WUBlastX LINE_R2-Hero 204005 204796 74 - . . scaffold1104 GLEAN promoter 206280 207279 0.999922 + . ID=CGI_10020364; scaffold1104 GLEAN mRNA 207280 210598 0.999922 + . ID=CGI_10020364; scaffold1104 GLEAN promoter 212154 213153 0.915732 + . ID=CGI_10020365; scaffold1104 GLEAN mRNA 213154 215278 0.915732 + . ID=CGI_10020365; scaffold1104 GLEAN promoter 214411 215410 0.915732 + . ID=CGI_10020366; scaffold1104 GLEAN mRNA 215411 225787 0.915732 + . ID=CGI_10020366; scaffold1104 TRF Tandem_Repeat 224057 224102 92 + . . scaffold1104 TRF Tandem_Repeat 224760 224807 96 + . . scaffold1104 GLEAN mRNA 226361 228174 0.83394 - . ID=CGI_10020367; scaffold1104 GLEAN promoter 228175 229174 0.83394 - . ID=CGI_10020367; scaffold1104 TRF Tandem_Repeat 229561 229603 86 + . . scaffold1104 TRF Tandem_Repeat 231377 231433 114 + . . scaffold1104 GLEAN mRNA 232817 242699 0.861403 - . ID=CGI_10020368; scaffold1104 GLEAN promoter 242700 243699 0.861403 - . ID=CGI_10020368; scaffold1104 GLEAN mRNA 261105 268225 0.565401 - . ID=CGI_10020369; scaffold1104 TRF Tandem_Repeat 261512 261536 50 + . . scaffold1104 TRF Tandem_Repeat 266964 267050 113 + . . scaffold1104 TRF Tandem_Repeat 267144 267317 154 + . . scaffold1104 TRF Tandem_Repeat 267344 267564 228 + . . scaffold1104 GLEAN promoter 267640 268639 0.999999 + . ID=CGI_10020370; scaffold1104 GLEAN promoter 268226 269225 0.565401 - . ID=CGI_10020369; scaffold1104 GLEAN mRNA 268640 280415 0.999999 + . ID=CGI_10020370; scaffold1104 TRF Tandem_Repeat 272548 272595 96 + . . scaffold1104 GLEAN mRNA 283712 298960 0.998143 - . ID=CGI_10020371; scaffold1104 GLEAN promoter 298544 299543 0.769833 + . ID=CGI_10020372; scaffold1104 GLEAN promoter 298961 299960 0.998143 - . ID=CGI_10020371; scaffold1104 GLEAN mRNA 299544 305006 0.769833 + . ID=CGI_10020372; scaffold1104 GLEAN mRNA 304373 306528 0.999984 - . ID=CGI_10020373; scaffold1104 GLEAN promoter 306529 307528 0.999984 - . ID=CGI_10020373; scaffold1104 TRF Tandem_Repeat 307246 307294 98 + . . scaffold1104 WUBlastX LINE_CR1 307608 308279 293 + . . scaffold1104 WUBlastX LINE_CR1-L2 307719 308279 479 + . . scaffold1104 WUBlastX LINE_CR1 308273 309019 223 + . . scaffold1104 WUBlastX LINE_CR1-L2 308273 308851 400 + . . scaffold1104 WUBlastX LINE_CR1-L2 308862 309470 144 + . . scaffold1104 GLEAN mRNA 320065 320253 0.573533 - . ID=CGI_10020374; scaffold1104 GLEAN promoter 320254 321253 0.573533 - . ID=CGI_10020374; scaffold1104 GLEAN mRNA 320447 327944 0.999999 - . ID=CGI_10020375; scaffold1104 GLEAN promoter 327945 328944 0.999999 - . ID=CGI_10020375; scaffold1104 WUBlastX LINE_RTE-X 333709 334089 27 - . . scaffold1104 TRF Tandem_Repeat 334132 334230 94 + . . scaffold1104 TRF Tandem_Repeat 334989 335095 83 + . . scaffold1104 WUBlastX LINE_RTE-X 335934 336203 49 - . . scaffold1104 WUBlastX LINE_RTE-X 336078 336227 69 - . . scaffold1104 GLEAN promoter 337396 338395 0.789863 + . ID=CGI_10020376; scaffold1104 GLEAN mRNA 338396 347613 0.789863 + . ID=CGI_10020376; scaffold1104 TRF Tandem_Repeat 344669 344694 52 + . . scaffold1104 GLEAN mRNA 353172 358403 0.999661 - . ID=CGI_10020377; scaffold1104 GLEAN promoter 358404 359403 0.999661 - . ID=CGI_10020377; scaffold1104 GLEAN promoter 363846 364845 0.999976 + . ID=CGI_10020378; scaffold1104 GLEAN mRNA 364846 372405 0.999976 + . ID=CGI_10020378; scaffold1104 TRF Tandem_Repeat 366100 366137 76 + . . scaffold1104 TRF Tandem_Repeat 367571 367616 85 + . . scaffold1104 GLEAN mRNA 374442 377725 0.692107 - . ID=CGI_10020379; scaffold1104 GLEAN promoter 377726 378725 0.692107 - . ID=CGI_10020379; scaffold1104 GLEAN promoter 377828 378827 0.999995 + . ID=CGI_10020380; scaffold1104 GLEAN mRNA 378828 381863 0.999995 + . ID=CGI_10020380; scaffold1104 GLEAN mRNA 385348 395510 1 - . ID=CGI_10020381; scaffold1104 TRF Tandem_Repeat 391470 392162 1054 + . . scaffold1104 TRF Tandem_Repeat 392162 393043 1281 + . . scaffold1104 GLEAN promoter 395511 396510 1 - . ID=CGI_10020381; scaffold1104 GLEAN mRNA 397031 423314 0.613506 - . ID=CGI_10020382; scaffold1104 TRF Tandem_Repeat 406337 406412 89 + . . scaffold1104 GLEAN promoter 408483 409482 0.654724 + . ID=CGI_10020383; scaffold1104 GLEAN promoter 408797 409796 0.593367 + . ID=CGI_10020384; scaffold1104 GLEAN mRNA 409483 409695 0.654724 + . ID=CGI_10020383; scaffold1104 GLEAN mRNA 409797 410270 0.593367 + . ID=CGI_10020384; scaffold1104 TRF Tandem_Repeat 420341 420365 50 + . . scaffold1104 TRF Tandem_Repeat 420700 420736 74 + . . scaffold1104 GLEAN promoter 423315 424314 0.613506 - . ID=CGI_10020382; scaffold1104 WUBlastX LINE_RTE-BovB 424113 424280 62 + . . scaffold1104 WUBlastX LINE_RTE-BovB 424140 424328 128 + . . scaffold1104 WUBlastX LINE_RTE-BovB 424140 424472 110 + . . scaffold1104 WUBlastX LINE_RTE-BovB 424454 424543 20 + . . scaffold1104 WUBlastX LINE_RTE-BovB 424503 424628 21 + . . scaffold1104 WUBlastX LINE_RTE-BovB 424566 424628 29 + . . scaffold1104 TRF Tandem_Repeat 424849 424888 80 + . . scaffold1104 WUBlastX LINE_RTE-BovB 425594 425737 100 + . . scaffold1104 WUBlastX LINE_RTE-BovB 425648 425776 58 + . . scaffold1104 WUBlastX LINE_RTE-BovB 426079 426180 23 + . . scaffold1104 GLEAN promoter 426462 427461 0.999372 + . ID=CGI_10020385; scaffold1104 WUBlastX LINE_R2-Hero 427064 427306 57 + . . scaffold1104 WUBlastX LINE_R2-Hero 427144 427665 105 + . . scaffold1104 GLEAN mRNA 427462 427692 0.999372 + . ID=CGI_10020385; scaffold1104 WUBlastX LINE_R2-Hero 428195 428581 121 + . . scaffold1104 WUBlastX LINE_R2-Hero 428491 429087 201 + . . scaffold1104 WUBlastX LINE_R2-Hero 428596 429087 211 + . . scaffold1104 WUBlastX LINE_R2-Hero 429089 429229 78 + . . scaffold1104 WUBlastX LINE_R2-Hero 429168 429533 200 + . . scaffold1104 WUBlastX LINE_R2-Hero 429518 429922 231 + . . scaffold1104 WUBlastX LINE_R2-Hero 429925 430017 55 + . . scaffold1104 WUBlastX LINE_R2-Hero 431063 431755 222 + . . scaffold1104 WUBlastX LINE_R2-Hero 431222 431755 283 + . . scaffold1104 WUBlastX LINE_R2-Hero 431758 431814 27 + . . scaffold1104 WUBlastX LINE_R2-Hero 431802 432092 126 + . . scaffold1104 GLEAN mRNA 445619 449925 0.99941 - . ID=CGI_10020386; scaffold1104 GLEAN promoter 449926 450925 0.99941 - . ID=CGI_10020386; scaffold1104 GLEAN promoter 451294 452293 0.998829 + . ID=CGI_10020387; scaffold1104 GLEAN mRNA 452294 465824 0.998829 + . ID=CGI_10020387; scaffold1104 TRF Tandem_Repeat 453207 453255 98 + . . scaffold1104 WUBlastX LINE_RTE-BovB 468284 468643 28 - . . scaffold1104 WUBlastX LINE_RTE-BovB 469341 469586 58 - . . scaffold1104 GLEAN mRNA 471326 480819 0.999997 - . ID=CGI_10020388; scaffold1104 TRF Tandem_Repeat 472308 472367 120 + . . scaffold1104 GLEAN promoter 480820 481819 0.999997 - . ID=CGI_10020388; scaffold1104 WUBlastX LINE_DRE 487956 488027 23 - . . scaffold1104 WUBlastX LINE_CR1 487983 490145 1666 - . . scaffold1104 GLEAN promoter 489628 490627 0.999674 + . ID=CGI_10020389; scaffold1104 GLEAN mRNA 490628 496096 0.999674 + . ID=CGI_10020389; scaffold1104 GLEAN mRNA 496735 498387 1 - . ID=CGI_10020390; scaffold1104 GLEAN promoter 498388 499387 1 - . ID=CGI_10020390; scaffold1104 GLEAN mRNA 502059 528268 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX LINE_CR1 516130 517539 852 + . . scaffold1104 WUBlastX LINE_CR1 517496 518449 599 + . . scaffold1104 GLEAN promoter 523853 524852 0.523865 + . ID=CGI_10020392; scaffold1104 GLEAN mRNA 524853 533185 0.523865 + . ID=CGI_10020392; scaffold1104 WUBlastX DNA_IS4EU 525979 526422 182 - . . scaffold1104 WUBlastX DNA_IS4EU 526054 526491 94 - . . scaffold1104 WUBlastX DNA_Kolobok-IS4 526370 526582 71 - . . scaffold1104 WUBlastX DNA_IS4EU 526457 526663 70 - . . scaffold1104 WUBlastX DNA_Kolobok-IS4 527309 528067 309 + . . scaffold1104 GLEAN promoter 528269 529268 0.99448 - . ID=CGI_10020391; scaffold1104 WUBlastX DNA_IS4EU 529086 529271 69 - . . scaffold1104 TRF Tandem_Repeat 537222 537272 57 + . . scaffold1104 WUBlastX LINE_L2 542220 542528 71 - . . scaffold1104 TRF Tandem_Repeat 546856 547650 942 + . . scaffold1104 TRF Tandem_Repeat 548594 548740 73 + . . scaffold1104 TRF Tandem_Repeat 548656 548785 93 + . . scaffold1104 TRF Tandem_Repeat 552434 552825 367 + . . scaffold1104 TRF Tandem_Repeat 556265 556330 57 + . . scaffold1104 TRF Tandem_Repeat 564934 565005 67 + . . scaffold1104 WUBlastX DNA_TcMar-Marin 566043 566171 50 + . . scaffold1104 WUBlastX DNA_TcMar-Marin 566495 566593 29 + . . scaffold1104 WUBlastX DNA_TcMar-Marin 566528 566593 31 + . . scaffold1104 WUBlastX DNA_TcMar-Marin 566682 566858 38 + . . scaffold1104 TRF Tandem_Repeat 568427 568472 67 + . . scaffold1104 TRF Tandem_Repeat 575150 575206 114 + . . scaffold1104 GLEAN promoter 580995 581994 0.523893 + . ID=CGI_10020393; scaffold1104 TRF Tandem_Repeat 581072 581105 68 + . . scaffold1104 GLEAN mRNA 581995 589254 0.523893 + . ID=CGI_10020393; scaffold1104 GLEAN promoter 599092 600091 0.999624 + . ID=CGI_10020394; scaffold1104 GLEAN mRNA 600092 616485 0.999624 + . ID=CGI_10020394; scaffold1104 TRF Tandem_Repeat 606591 606626 72 + . . scaffold1104 TRF Tandem_Repeat 611322 611360 69 + . . scaffold1104 GLEAN promoter 617389 618388 0.7001 + . ID=CGI_10020396; scaffold1104 GLEAN mRNA 617817 623331 1 - . ID=CGI_10020395; scaffold1104 GLEAN mRNA 618389 633457 0.7001 + . ID=CGI_10020396; scaffold1104 GLEAN promoter 623332 624331 1 - . ID=CGI_10020395; scaffold1104 TRF Tandem_Repeat 624784 624835 77 + . . scaffold1104 GLEAN mRNA 633708 646102 1 - . ID=CGI_10020397; scaffold1104 GLEAN promoter 646103 647102 1 - . ID=CGI_10020397; scaffold1105 WUBlastX LTR_Gypsy 1508 1816 27 - . . scaffold1105 GLEAN mRNA 3962 8657 1 - . ID=CGI_10001251; scaffold1105 GLEAN promoter 8658 9657 1 - . ID=CGI_10001251; scaffold1105 TRF Tandem_Repeat 13289 13353 130 + . . scaffold1106 GLEAN mRNA 814 6534 0.62988 - . ID=CGI_10002423; scaffold1106 GLEAN promoter 6535 7534 0.62988 - . ID=CGI_10002423; scaffold1106 GLEAN mRNA 6866 7244 0.739652 - . ID=CGI_10002424; scaffold1106 TRF Tandem_Repeat 7010 7039 51 + . . scaffold1106 GLEAN promoter 7245 8244 0.739652 - . ID=CGI_10002424; scaffold1106 TRF Tandem_Repeat 8426 8473 62 + . . scaffold1106 GLEAN promoter 12450 13449 0.482682 + . ID=CGI_10002425; scaffold1106 GLEAN mRNA 13450 22985 0.482682 + . ID=CGI_10002425; scaffold1106 WUBlastX LINE_L1-Tx1 13929 14030 34 - . . scaffold1106 WUBlastX LINE_L1 14129 14251 38 - . . scaffold1106 TRF Tandem_Repeat 14276 14970 556 + . . scaffold1106 TRF Tandem_Repeat 32510 32581 144 + . . scaffold1106 TRF Tandem_Repeat 36944 37021 111 + . . scaffold1106 TRF Tandem_Repeat 36944 37021 95 + . . scaffold1106 GLEAN promoter 37221 38220 0.544852 + . ID=CGI_10002426; scaffold1106 GLEAN mRNA 38221 46168 0.544852 + . ID=CGI_10002426; scaffold1106 TRF Tandem_Repeat 42169 42207 60 + . . scaffold1107 GLEAN mRNA 1216 3169 0.999676 - . ID=CGI_10004765; scaffold1107 GLEAN promoter 3170 4169 0.999676 - . ID=CGI_10004765; scaffold1107 TRF Tandem_Repeat 7622 7753 52 + . . scaffold1107 GLEAN mRNA 9693 14367 0.733128 - . ID=CGI_10004766; scaffold1107 GLEAN promoter 14368 15367 0.733128 - . ID=CGI_10004766; scaffold1107 TRF Tandem_Repeat 21276 21383 65 + . . scaffold1107 GLEAN mRNA 21764 25180 1 - . ID=CGI_10004767; scaffold1107 GLEAN promoter 24384 25383 0.797312 + . ID=CGI_10004768; scaffold1107 GLEAN promoter 25181 26180 1 - . ID=CGI_10004767; scaffold1107 GLEAN mRNA 25384 68274 0.797312 + . ID=CGI_10004768; scaffold1107 TRF Tandem_Repeat 28019 28079 104 + . . scaffold1107 TRF Tandem_Repeat 28019 28082 74 + . . scaffold1107 TRF Tandem_Repeat 31415 32054 598 + . . scaffold1107 WUBlastX LINE_L1 42293 42397 23 - . . scaffold1107 WUBlastX LINE_L1 42599 42946 80 - . . scaffold1107 WUBlastX LINE_L1-Tx1 42662 43069 65 - . . scaffold1107 WUBlastX LINE_L1 42683 42988 81 - . . scaffold1107 WUBlastX LINE_L1-Tx1 43030 43113 35 - . . scaffold1107 GLEAN mRNA 52985 80298 1 - . ID=CGI_10004769; scaffold1107 GLEAN promoter 80299 81298 1 - . ID=CGI_10004769; scaffold1107 GLEAN promoter 80700 81699 1 + . ID=CGI_10004770; scaffold1107 GLEAN mRNA 81700 86721 1 + . ID=CGI_10004770; scaffold1107 GLEAN mRNA 87489 91256 1 - . ID=CGI_10004771; scaffold1107 GLEAN promoter 90513 91512 1 + . ID=CGI_10004772; scaffold1107 GLEAN promoter 91257 92256 1 - . ID=CGI_10004771; scaffold1107 GLEAN mRNA 91513 97091 1 + . ID=CGI_10004772; scaffold1107 TRF Tandem_Repeat 102695 102986 485 + . . scaffold1107 GLEAN promoter 102757 103756 0.496953 + . ID=CGI_10004773; scaffold1107 GLEAN mRNA 103757 108160 0.496953 + . ID=CGI_10004773; scaffold1107 TRF Tandem_Repeat 108391 108458 136 + . . scaffold1107 TRF Tandem_Repeat 109140 109184 55 + . . scaffold1108 WUBlastX LINE_CR1 1929 2096 26 + . . scaffold1108 WUBlastX LINE_RTE-X 2174 3982 89 + . . scaffold1108 WUBlastX LINE_RTE-X 2435 3964 318 + . . scaffold1108 WUBlastX LINE_RTE-X 3818 4072 51 + . . scaffold1108 GLEAN promoter 5763 6762 1 + . ID=CGI_10021955; scaffold1108 GLEAN mRNA 6763 24002 1 + . ID=CGI_10021955; scaffold1108 TRF Tandem_Repeat 18803 19450 810 + . . scaffold1108 TRF Tandem_Repeat 20638 21342 821 + . . scaffold1108 GLEAN mRNA 28254 42324 0.999088 - . ID=CGI_10021956; scaffold1108 TRF Tandem_Repeat 28906 29207 532 + . . scaffold1108 GLEAN promoter 39988 40987 0.798675 + . ID=CGI_10021957; scaffold1108 GLEAN mRNA 40988 50897 0.798675 + . ID=CGI_10021957; scaffold1108 GLEAN promoter 42325 43324 0.999088 - . ID=CGI_10021956; scaffold1108 TRF Tandem_Repeat 47076 47121 65 + . . scaffold1108 TRF Tandem_Repeat 56813 56855 86 + . . scaffold1108 TRF Tandem_Repeat 57758 57845 90 + . . scaffold1108 GLEAN mRNA 63550 64854 0.999999 - . ID=CGI_10021958; scaffold1108 WUBlastX DNA_En-Spm 63562 65844 1258 - . . scaffold1108 GLEAN promoter 64855 65854 0.999999 - . ID=CGI_10021958; scaffold1108 WUBlastX DNA_En-Spm 65059 66105 74 - . . scaffold1108 TRF Tandem_Repeat 68020 68082 72 + . . scaffold1108 TRF Tandem_Repeat 68020 68079 84 + . . scaffold1108 TRF Tandem_Repeat 68020 68075 76 + . . scaffold1108 TRF Tandem_Repeat 68106 69066 1468 + . . scaffold1108 TRF Tandem_Repeat 69208 69276 68 + . . scaffold1108 WUBlastX DNA_MuDR 78682 78939 64 + . . scaffold1108 GLEAN promoter 81186 82185 0.999643 + . ID=CGI_10021959; scaffold1108 GLEAN mRNA 82186 82971 0.999643 + . ID=CGI_10021959; scaffold1108 TRF Tandem_Repeat 83031 83081 88 + . . scaffold1108 TRF Tandem_Repeat 84459 84669 296 + . . scaffold1108 TRF Tandem_Repeat 84674 84890 168 + . . scaffold1108 TRF Tandem_Repeat 84762 84860 121 + . . scaffold1108 TRF Tandem_Repeat 87220 87263 70 + . . scaffold1108 TRF Tandem_Repeat 106658 107246 775 + . . scaffold1108 GLEAN promoter 110668 111667 0.999673 + . ID=CGI_10021960; scaffold1108 GLEAN mRNA 111668 118247 0.999673 + . ID=CGI_10021960; scaffold1108 GLEAN mRNA 120776 125964 0.496338 - . ID=CGI_10021961; scaffold1108 GLEAN promoter 125821 126820 0.776228 + . ID=CGI_10021962; scaffold1108 GLEAN promoter 125965 126964 0.496338 - . ID=CGI_10021961; scaffold1108 GLEAN mRNA 126821 135524 0.776228 + . ID=CGI_10021962; scaffold1108 GLEAN promoter 138201 139200 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 138490 138537 96 + . . scaffold1108 GLEAN mRNA 139201 167082 0.981604 + . ID=CGI_10021963; scaffold1108 TRF Tandem_Repeat 144375 145071 1020 + . . scaffold1108 TRF Tandem_Repeat 145746 146296 753 + . . scaffold1108 TRF Tandem_Repeat 147073 147261 306 + . . scaffold1108 TRF Tandem_Repeat 150231 150422 330 + . . scaffold1108 TRF Tandem_Repeat 150231 150521 451 + . . scaffold1108 TRF Tandem_Repeat 150231 150521 451 + . . scaffold1108 TRF Tandem_Repeat 150425 150521 194 + . . scaffold1108 TRF Tandem_Repeat 157007 159226 797 + . . scaffold1108 TRF Tandem_Repeat 157007 159236 2340 + . . scaffold1108 TRF Tandem_Repeat 157071 158337 1354 + . . scaffold1108 TRF Tandem_Repeat 158240 158378 63 + . . scaffold1108 TRF Tandem_Repeat 158333 159236 1074 + . . scaffold1108 GLEAN promoter 166905 167904 0.999387 + . ID=CGI_10021964; scaffold1108 GLEAN mRNA 167905 185753 0.999387 + . ID=CGI_10021964; scaffold1108 TRF Tandem_Repeat 173078 173632 957 + . . scaffold1108 GLEAN mRNA 186928 189915 1 - . ID=CGI_10021965; scaffold1108 GLEAN promoter 189916 190915 1 - . ID=CGI_10021965; scaffold1108 GLEAN promoter 191027 192026 0.995798 + . ID=CGI_10021966; scaffold1108 GLEAN mRNA 192027 208601 0.995798 + . ID=CGI_10021966; scaffold1108 TRF Tandem_Repeat 195008 195070 126 + . . scaffold1108 TRF Tandem_Repeat 195165 195415 330 + . . scaffold1108 TRF Tandem_Repeat 195675 195813 253 + . . scaffold1108 GLEAN mRNA 210097 214282 0.999635 - . ID=CGI_10021967; scaffold1108 TRF Tandem_Repeat 210354 210487 175 + . . scaffold1108 GLEAN promoter 214283 215282 0.999635 - . ID=CGI_10021967; scaffold1108 TRF Tandem_Repeat 216358 216551 291 + . . scaffold1108 TRF Tandem_Repeat 229095 229175 144 + . . scaffold1108 GLEAN mRNA 231754 246089 0.999792 - . ID=CGI_10021968; scaffold1108 TRF Tandem_Repeat 238543 238690 260 + . . scaffold1108 TRF Tandem_Repeat 238569 238686 65 + . . scaffold1108 GLEAN promoter 246090 247089 0.999792 - . ID=CGI_10021968; scaffold1108 TRF Tandem_Repeat 246992 247230 101 + . . scaffold1108 TRF Tandem_Repeat 247123 247216 98 + . . scaffold1108 GLEAN mRNA 249700 266216 0.999752 - . ID=CGI_10021969; scaffold1108 TRF Tandem_Repeat 252437 252737 469 + . . scaffold1108 GLEAN promoter 266217 267216 0.999752 - . ID=CGI_10021969; scaffold1108 TRF Tandem_Repeat 266968 267015 96 + . . scaffold1108 TRF Tandem_Repeat 268774 269121 167 + . . scaffold1108 TRF Tandem_Repeat 269392 269487 113 + . . scaffold1108 TRF Tandem_Repeat 270130 271668 1830 + . . scaffold1108 TRF Tandem_Repeat 270556 271666 1305 + . . scaffold1108 GLEAN promoter 272494 273493 0.998637 + . ID=CGI_10021970; scaffold1108 GLEAN mRNA 273494 287709 0.998637 + . ID=CGI_10021970; scaffold1108 TRF Tandem_Repeat 283596 285109 2425 + . . scaffold1108 GLEAN mRNA 292026 293166 1 - . ID=CGI_10021971; scaffold1108 GLEAN promoter 293167 294166 1 - . ID=CGI_10021971; scaffold1108 GLEAN promoter 295174 296173 0.460093 + . ID=CGI_10021972; scaffold1108 GLEAN mRNA 296174 306385 0.460093 + . ID=CGI_10021972; scaffold1108 TRF Tandem_Repeat 301217 301621 810 + . . scaffold1108 TRF Tandem_Repeat 305034 305214 237 + . . scaffold1108 TRF Tandem_Repeat 306478 308177 2193 + . . scaffold1108 TRF Tandem_Repeat 318299 318606 106 + . . scaffold1108 TRF Tandem_Repeat 318554 318674 108 + . . scaffold1108 GLEAN promoter 320347 321346 1 + . ID=CGI_10021973; scaffold1108 GLEAN mRNA 321347 338926 1 + . ID=CGI_10021973; scaffold1108 TRF Tandem_Repeat 326398 326989 480 + . . scaffold1108 TRF Tandem_Repeat 329660 330582 1336 + . . scaffold1108 TRF Tandem_Repeat 336670 336955 331 + . . scaffold1108 TRF Tandem_Repeat 341981 344974 3746 + . . scaffold1108 GLEAN mRNA 347204 348379 0.999996 - . ID=CGI_10021974; scaffold1108 GLEAN promoter 348380 349379 0.999996 - . ID=CGI_10021974; scaffold1108 GLEAN mRNA 349376 351401 0.97732 - . ID=CGI_10021975; scaffold1108 GLEAN promoter 351402 352401 0.97732 - . ID=CGI_10021975; scaffold1108 TRF Tandem_Repeat 357234 359679 4386 + . . scaffold1108 TRF Tandem_Repeat 362199 362621 413 + . . scaffold1108 GLEAN promoter 379590 380589 0.811706 + . ID=CGI_10021976; scaffold1108 GLEAN mRNA 380590 383415 0.811706 + . ID=CGI_10021976; scaffold1108 TRF Tandem_Repeat 386644 386691 96 + . . scaffold1108 GLEAN mRNA 387014 397662 0.988737 - . ID=CGI_10021977; scaffold1108 TRF Tandem_Repeat 391852 391895 54 + . . scaffold1108 TRF Tandem_Repeat 395162 395929 1129 + . . scaffold1108 GLEAN promoter 397663 398662 0.988737 - . ID=CGI_10021977; scaffold1108 GLEAN promoter 398536 399535 0.5 + . ID=CGI_10021978; scaffold1108 GLEAN mRNA 399536 403158 0.5 + . ID=CGI_10021978; scaffold1108 TRF Tandem_Repeat 399620 399677 72 + . . scaffold1108 GLEAN promoter 402829 403828 0.992007 + . ID=CGI_10021979; scaffold1108 GLEAN mRNA 403829 408876 0.992007 + . ID=CGI_10021979; scaffold1108 TRF Tandem_Repeat 407300 408036 1133 + . . scaffold1108 GLEAN promoter 411229 412228 0.990447 + . ID=CGI_10021980; scaffold1108 GLEAN mRNA 412229 432514 0.990447 + . ID=CGI_10021980; scaffold1108 TRF Tandem_Repeat 416799 416847 98 + . . scaffold1108 TRF Tandem_Repeat 417065 417160 106 + . . scaffold1108 WUBlastX LTR_Gypsy 420219 420347 76 - . . scaffold1108 TRF Tandem_Repeat 423818 423959 221 + . . scaffold1108 TRF Tandem_Repeat 425531 425643 154 + . . scaffold1108 TRF Tandem_Repeat 428553 428586 68 + . . scaffold1108 TRF Tandem_Repeat 428968 429597 779 + . . scaffold1108 TRF Tandem_Repeat 428968 429597 581 + . . scaffold1108 GLEAN mRNA 437195 456665 0.375679 - . ID=CGI_10021982; scaffold1108 TRF Tandem_Repeat 438359 438798 408 + . . scaffold1108 GLEAN promoter 456666 457665 0.375679 - . ID=CGI_10021982; scaffold1108 GLEAN mRNA 458288 465273 0.999922 - . ID=CGI_10021983; scaffold1108 TRF Tandem_Repeat 462161 462192 55 + . . scaffold1108 GLEAN promoter 464482 465481 0.999949 + . ID=CGI_10021984; scaffold1108 GLEAN promoter 465274 466273 0.999922 - . ID=CGI_10021983; scaffold1108 GLEAN mRNA 465482 479623 0.999949 + . ID=CGI_10021984; scaffold1108 TRF Tandem_Repeat 476302 476421 59 + . . scaffold1108 TRF Tandem_Repeat 476310 476444 220 + . . scaffold1108 TRF Tandem_Repeat 477010 477975 1605 + . . scaffold1108 GLEAN mRNA 482996 489346 1 - . ID=CGI_10021985; scaffold1108 GLEAN promoter 488582 489581 0.999992 + . ID=CGI_10021986; scaffold1108 GLEAN promoter 489347 490346 1 - . ID=CGI_10021985; scaffold1108 GLEAN mRNA 489582 492144 0.999992 + . ID=CGI_10021986; scaffold1108 TRF Tandem_Repeat 490630 490696 116 + . . scaffold1108 TRF Tandem_Repeat 503707 503760 108 + . . scaffold1108 TRF Tandem_Repeat 505734 505803 131 + . . scaffold1108 TRF Tandem_Repeat 507063 507188 121 + . . scaffold1108 GLEAN promoter 510164 511163 1 + . ID=CGI_10021987; scaffold1108 GLEAN mRNA 511164 514785 1 + . ID=CGI_10021987; scaffold1108 TRF Tandem_Repeat 519880 520092 150 + . . scaffold1108 WUBlastX DNA_Sola 521456 521959 133 - . . scaffold1108 WUBlastX DNA_Sola 522451 522744 115 - . . scaffold1108 WUBlastX DNA_Sola 522493 522837 23 - . . scaffold1108 WUBlastX DNA_Crypton 523502 524014 224 + . . scaffold1108 WUBlastX DNA_Crypton 523992 524504 162 + . . scaffold1108 TRF Tandem_Repeat 527035 527120 52 + . . scaffold1108 TRF Tandem_Repeat 536429 537342 1434 + . . scaffold1108 TRF Tandem_Repeat 537515 537562 62 + . . scaffold1108 TRF Tandem_Repeat 537519 537562 72 + . . scaffold1108 TRF Tandem_Repeat 538850 539259 466 + . . scaffold1108 GLEAN promoter 543617 544616 0.999978 + . ID=CGI_10021988; scaffold1108 GLEAN mRNA 544617 552703 0.999978 + . ID=CGI_10021988; scaffold1108 TRF Tandem_Repeat 546819 546853 52 + . . scaffold1108 TRF Tandem_Repeat 554172 554217 83 + . . scaffold1108 WUBlastX LTR_Gypsy 562161 562595 75 - . . scaffold1108 WUBlastX LTR_Gypsy-Cigr 562332 562583 132 - . . scaffold1108 WUBlastX LTR_Gypsy 562465 563316 267 - . . scaffold1108 WUBlastX LTR_Gypsy-Cigr 562600 563301 530 - . . scaffold1108 WUBlastX LTR_Gypsy 562660 563577 454 - . . scaffold1108 WUBlastX LTR_Gypsy-Gmr1 563787 563837 20 - . . scaffold1108 WUBlastX LTR_Gypsy-Cigr 563845 565194 1163 - . . scaffold1108 WUBlastX LTR_Gypsy 565244 565672 63 - . . scaffold1108 WUBlastX LTR_Gypsy 565693 565986 27 - . . scaffold1108 WUBlastX LTR_Gypsy 565693 565866 40 - . . scaffold1108 WUBlastX LTR_Gypsy 565693 565920 32 - . . scaffold1108 WUBlastX LTR_Gypsy 565979 566086 30 - . . scaffold1108 WUBlastX LTR_Gypsy 566015 566182 30 - . . scaffold1108 WUBlastX LTR_Gypsy 566478 566780 37 - . . scaffold1108 TRF Tandem_Repeat 595566 595593 56 + . . scaffold1108 WUBlastX LINE_L1 604622 604870 60 + . . scaffold1108 WUBlastX LINE_L1-Tx1 604628 605227 49 + . . scaffold1108 WUBlastX LINE_L1-Tx1 605545 605607 22 + . . scaffold1108 TRF Tandem_Repeat 609224 609307 53 + . . scaffold1108 TRF Tandem_Repeat 609258 609309 86 + . . scaffold1108 TRF Tandem_Repeat 623794 623836 59 + . . scaffold1108 WUBlastX DNA_PiggyBac 630024 630137 30 + . . scaffold1108 WUBlastX DNA_PiggyBac 630253 630453 45 + . . scaffold1108 WUBlastX DNA_Zator 636039 636584 151 - . . scaffold1108 WUBlastX DNA_Zator 636685 636843 101 - . . scaffold1108 GLEAN promoter 637569 638568 0.978727 + . ID=CGI_10021989; scaffold1108 GLEAN mRNA 638569 646951 0.978727 + . ID=CGI_10021989; scaffold1108 TRF Tandem_Repeat 641906 642784 1271 + . . scaffold1108 TRF Tandem_Repeat 643728 643874 73 + . . scaffold1108 TRF Tandem_Repeat 643790 643919 93 + . . scaffold1108 GLEAN promoter 650656 651655 0.863017 + . ID=CGI_10021990; scaffold1108 GLEAN mRNA 651656 663904 0.863017 + . ID=CGI_10021990; scaffold1108 TRF Tandem_Repeat 653361 653408 96 + . . scaffold1108 TRF Tandem_Repeat 656037 656080 88 + . . scaffold1108 TRF Tandem_Repeat 656667 656711 90 + . . scaffold1108 TRF Tandem_Repeat 656799 656839 73 + . . scaffold1108 TRF Tandem_Repeat 710583 710631 89 + . . scaffold1108 GLEAN promoter 711353 712352 0.9996 + . ID=CGI_10021991; scaffold1108 TRF Tandem_Repeat 711776 711816 75 + . . scaffold1108 GLEAN mRNA 712353 716334 0.9996 + . ID=CGI_10021991; scaffold1108 GLEAN mRNA 718515 725612 0.999943 - . ID=CGI_10021992; scaffold1108 GLEAN promoter 725613 725722 0.999943 - . ID=CGI_10021992; scaffold1111 GLEAN promoter 1 883 0.472216 + . ID=CGI_10001237; scaffold1111 GLEAN mRNA 884 17069 0.472216 + . ID=CGI_10001237; scaffold1111 GLEAN mRNA 6582 11729 0.996572 - . ID=CGI_10001238; scaffold1111 GLEAN promoter 11730 12729 0.996572 - . ID=CGI_10001238; scaffold1112 TRF Tandem_Repeat 6999 7047 98 + . . scaffold1112 TRF Tandem_Repeat 7076 7114 78 + . . scaffold1112 TRF Tandem_Repeat 8600 8726 77 + . . scaffold1112 GLEAN promoter 13572 14571 1 + . ID=CGI_10012399; scaffold1112 GLEAN mRNA 14572 16741 1 + . ID=CGI_10012399; scaffold1112 WUBlastX LINE_L2 17814 18065 47 - . . scaffold1112 WUBlastX LINE_L2 17874 18329 44 - . . scaffold1112 WUBlastX LINE_CR1-L2 17880 17999 79 - . . scaffold1112 WUBlastX DNA_TcMar-Tc1 54624 54734 62 - . . scaffold1112 WUBlastX DNA_TcMar-Tc1 54766 55044 50 - . . scaffold1112 TRF Tandem_Repeat 61293 61352 120 + . . scaffold1112 WUBlastX LTR_Gypsy 63540 63686 42 + . . scaffold1112 WUBlastX LTR_Gypsy 63564 64082 122 + . . scaffold1112 WUBlastX LTR_Gypsy 63693 64082 160 + . . scaffold1112 WUBlastX LTR_Gypsy 63753 64070 173 + . . scaffold1112 WUBlastX LTR_Gypsy 64019 64288 210 + . . scaffold1112 WUBlastX LINE_RTE-X 67876 69735 771 - . . scaffold1112 WUBlastX LINE_CR1 68689 69957 121 - . . scaffold1112 TRF Tandem_Repeat 72192 72252 122 + . . scaffold1112 TRF Tandem_Repeat 75206 75299 188 + . . scaffold1112 WUBlastX LINE_Penelope 76699 76971 46 + . . scaffold1112 TRF Tandem_Repeat 78550 78600 102 + . . scaffold1112 TRF Tandem_Repeat 82071 82158 128 + . . scaffold1112 WUBlastX LINE_RTE-BovB 82402 82542 57 - . . scaffold1112 GLEAN mRNA 113105 116523 1 - . ID=CGI_10012401; scaffold1112 TRF Tandem_Repeat 114721 114747 54 + . . scaffold1112 TRF Tandem_Repeat 114909 114983 141 + . . scaffold1112 GLEAN promoter 115675 116674 1 + . ID=CGI_10012402; scaffold1112 GLEAN promoter 116524 117523 1 - . ID=CGI_10012401; scaffold1112 GLEAN mRNA 116675 122048 1 + . ID=CGI_10012402; scaffold1112 GLEAN mRNA 127517 132518 0.651418 - . ID=CGI_10012403; scaffold1112 TRF Tandem_Repeat 132370 132415 92 + . . scaffold1112 GLEAN promoter 132519 133518 0.651418 - . ID=CGI_10012403; scaffold1112 GLEAN promoter 136138 137137 1 + . ID=CGI_10012404; scaffold1112 GLEAN mRNA 137138 141566 1 + . ID=CGI_10012404; scaffold1112 TRF Tandem_Repeat 139571 140661 1648 + . . scaffold1112 GLEAN mRNA 145318 180319 0.854621 - . ID=CGI_10012405; scaffold1112 TRF Tandem_Repeat 167898 167959 115 + . . scaffold1112 TRF Tandem_Repeat 168080 168128 89 + . . scaffold1112 TRF Tandem_Repeat 169151 169269 75 + . . scaffold1112 TRF Tandem_Repeat 169209 169328 78 + . . scaffold1112 GLEAN promoter 180136 181135 1 + . ID=CGI_10012406; scaffold1112 GLEAN promoter 180320 181319 0.854621 - . ID=CGI_10012405; scaffold1112 TRF Tandem_Repeat 180377 180424 96 + . . scaffold1112 TRF Tandem_Repeat 180574 180613 80 + . . scaffold1112 GLEAN mRNA 181136 187303 1 + . ID=CGI_10012406; scaffold1112 TRF Tandem_Repeat 181492 181522 62 + . . scaffold1112 TRF Tandem_Repeat 187525 187571 94 + . . scaffold1112 GLEAN mRNA 192911 199971 0.999699 - . ID=CGI_10012407; scaffold1112 TRF Tandem_Repeat 195333 195368 72 + . . scaffold1112 TRF Tandem_Repeat 197175 197219 90 + . . scaffold1112 GLEAN promoter 199682 200681 0.999999 + . ID=CGI_10012408; scaffold1112 GLEAN promoter 199972 200971 0.999699 - . ID=CGI_10012407; scaffold1112 TRF Tandem_Repeat 200068 200150 150 + . . scaffold1112 GLEAN mRNA 200682 202101 0.999999 + . ID=CGI_10012408; scaffold1112 GLEAN promoter 204165 205164 0.963095 + . ID=CGI_10012409; scaffold1112 GLEAN mRNA 205165 206784 0.963095 + . ID=CGI_10012409; scaffold1112 TRF Tandem_Repeat 210353 210382 51 + . . scaffold1112 GLEAN mRNA 221278 226684 0.693171 - . ID=CGI_10012410; scaffold1112 TRF Tandem_Repeat 226580 226607 56 + . . scaffold1112 GLEAN promoter 226685 227684 0.693171 - . ID=CGI_10012410; scaffold1112 TRF Tandem_Repeat 226725 226815 74 + . . scaffold1112 TRF Tandem_Repeat 233090 233359 459 + . . scaffold1112 TRF Tandem_Repeat 233090 233360 335 + . . scaffold1112 WUBlastX LINE_RTE-X 234577 234759 37 - . . scaffold1112 WUBlastX LINE_RTE-X 237468 238109 66 - . . scaffold1112 WUBlastX LINE_RTE-X 237666 238106 101 - . . scaffold1112 WUBlastX LINE_RTE-X 237765 238106 105 - . . scaffold1112 WUBlastX LINE_RTE-X 238120 238449 68 - . . scaffold1112 WUBlastX LINE_RTE-X 238283 239020 120 - . . scaffold1112 WUBlastX LINE_RTE-X 238436 239269 99 - . . scaffold1112 WUBlastX LINE_RTE-X 238469 239020 133 - . . scaffold1112 WUBlastX LINE_Rex-Babar 239783 240001 32 - . . scaffold1112 WUBlastX LINE_RTE-X 239964 240443 52 - . . scaffold1112 WUBlastX LINE_RTE-X 240174 240473 59 - . . scaffold1112 WUBlastX LINE_RTE-X 240243 240518 36 - . . scaffold1112 WUBlastX LINE_RTE-X 241266 241868 168 - . . scaffold1112 WUBlastX LINE_L1 242000 242758 152 - . . scaffold1112 WUBlastX LINE_L2 242129 242632 154 - . . scaffold1112 TRF Tandem_Repeat 251546 251628 166 + . . scaffold1112 TRF Tandem_Repeat 252856 252911 60 + . . scaffold1112 TRF Tandem_Repeat 266164 266198 70 + . . scaffold1112 TRF Tandem_Repeat 266382 266426 90 + . . scaffold1112 TRF Tandem_Repeat 266945 267011 71 + . . scaffold1112 GLEAN mRNA 298850 305522 0.999979 - . ID=CGI_10012411; scaffold1112 GLEAN promoter 305523 306522 0.999979 - . ID=CGI_10012411; scaffold1112 TRF Tandem_Repeat 305787 305819 66 + . . scaffold1112 TRF Tandem_Repeat 317300 318425 1573 + . . scaffold1113 GLEAN promoter 905 1904 1 + . ID=CGI_10002449; scaffold1113 GLEAN mRNA 1905 11736 1 + . ID=CGI_10002449; scaffold1113 GLEAN promoter 11201 12200 1 + . ID=CGI_10002450; scaffold1113 GLEAN mRNA 12201 19723 1 + . ID=CGI_10002450; scaffold1113 TRF Tandem_Repeat 16718 16749 64 + . . scaffold1113 TRF Tandem_Repeat 16860 17622 1081 + . . scaffold1113 TRF Tandem_Repeat 18382 18767 106 + . . scaffold1113 TRF Tandem_Repeat 18578 18732 93 + . . scaffold1113 TRF Tandem_Repeat 18579 18755 116 + . . scaffold1113 TRF Tandem_Repeat 18621 18769 89 + . . scaffold1113 TRF Tandem_Repeat 18630 18703 60 + . . scaffold1113 TRF Tandem_Repeat 18634 18702 52 + . . scaffold1113 GLEAN promoter 18740 19739 1 + . ID=CGI_10002451; scaffold1113 GLEAN mRNA 19740 22130 1 + . ID=CGI_10002451; scaffold1113 GLEAN mRNA 24224 32083 0.500884 - . ID=CGI_10002452; scaffold1113 GLEAN promoter 25942 26941 0.999998 + . ID=CGI_10002453; scaffold1113 TRF Tandem_Repeat 26507 26536 60 + . . scaffold1113 GLEAN mRNA 26942 35291 0.999998 + . ID=CGI_10002453; scaffold1113 GLEAN promoter 32084 33083 0.500884 - . ID=CGI_10002452; scaffold1113 WUBlastX LTR_Ngaro 46790 47026 180 - . . scaffold1114 GLEAN promoter 19514 20513 0.544852 + . ID=CGI_10001704; scaffold1114 GLEAN mRNA 20514 25585 0.544852 + . ID=CGI_10001704; scaffold1115 TRF Tandem_Repeat 17164 17198 70 + . . scaffold1115 TRF Tandem_Repeat 20189 20230 50 + . . scaffold1115 GLEAN mRNA 52973 65148 0.999124 - . ID=CGI_10005241; scaffold1115 TRF Tandem_Repeat 54463 54512 84 + . . scaffold1115 GLEAN promoter 65149 66148 0.999124 - . ID=CGI_10005241; scaffold1115 TRF Tandem_Repeat 69600 69665 57 + . . scaffold1115 TRF Tandem_Repeat 75465 75496 64 + . . scaffold1115 TRF Tandem_Repeat 75494 75522 58 + . . scaffold1115 TRF Tandem_Repeat 77034 77135 186 + . . scaffold1115 TRF Tandem_Repeat 77213 77345 176 + . . scaffold1115 TRF Tandem_Repeat 77734 77835 105 + . . scaffold1115 WUBlastX LINE_RTE-BovB 81770 81910 50 + . . scaffold1115 TRF Tandem_Repeat 98442 98501 120 + . . scaffold1115 WUBlastX LINE_L1-Tx1 99946 100227 23 - . . scaffold1115 WUBlastX LINE_L1-Tx1 100226 100936 152 - . . scaffold1115 GLEAN promoter 107574 108573 0.265075 + . ID=CGI_10005242; scaffold1115 GLEAN mRNA 108574 115548 0.265075 + . ID=CGI_10005242; scaffold1115 TRF Tandem_Repeat 110334 110849 403 + . . scaffold1115 TRF Tandem_Repeat 110931 111106 162 + . . scaffold1115 TRF Tandem_Repeat 117780 117813 52 + . . scaffold1115 TRF Tandem_Repeat 119195 119339 272 + . . scaffold1115 TRF Tandem_Repeat 119232 119323 56 + . . scaffold1115 WUBlastX LTR_Ngaro 120993 121256 95 + . . scaffold1115 WUBlastX LTR_Ngaro 120993 121355 71 + . . scaffold1116 GLEAN mRNA 102 5439 0.999992 - . ID=CGI_10009119; scaffold1116 TRF Tandem_Repeat 1360 1388 58 + . . scaffold1116 GLEAN promoter 5440 6439 0.999992 - . ID=CGI_10009119; scaffold1116 GLEAN mRNA 7749 9153 1 - . ID=CGI_10009120; scaffold1116 GLEAN promoter 9154 10153 1 - . ID=CGI_10009120; scaffold1116 WUBlastX RC_Helitron 28281 28394 68 - . . scaffold1116 WUBlastX RC_Helitron 28311 28430 33 - . . scaffold1116 WUBlastX RC_Helitron 28472 28564 30 - . . scaffold1116 WUBlastX RC_Helitron 28478 28594 23 - . . scaffold1116 WUBlastX RC_Helitron 28923 29327 107 - . . scaffold1116 WUBlastX RC_Helitron 28926 29408 48 - . . scaffold1116 TRF Tandem_Repeat 30287 30369 96 + . . scaffold1116 TRF Tandem_Repeat 30969 31030 124 + . . scaffold1116 TRF Tandem_Repeat 36877 36926 100 + . . scaffold1116 TRF Tandem_Repeat 42706 42755 55 + . . scaffold1116 TRF Tandem_Repeat 43908 43976 52 + . . scaffold1116 GLEAN mRNA 52332 58887 1 - . ID=CGI_10009121; scaffold1116 TRF Tandem_Repeat 53457 53572 205 + . . scaffold1116 TRF Tandem_Repeat 57934 58003 140 + . . scaffold1116 GLEAN promoter 57955 58954 1 + . ID=CGI_10009122; scaffold1116 GLEAN promoter 58888 59887 1 - . ID=CGI_10009121; scaffold1116 GLEAN mRNA 58955 62839 1 + . ID=CGI_10009122; scaffold1116 GLEAN mRNA 64742 71164 0.992465 - . ID=CGI_10009123; scaffold1116 TRF Tandem_Repeat 65105 65159 74 + . . scaffold1116 TRF Tandem_Repeat 67508 67545 76 + . . scaffold1116 GLEAN promoter 71165 72164 0.992465 - . ID=CGI_10009123; scaffold1116 GLEAN promoter 72360 73359 0.999995 + . ID=CGI_10009124; scaffold1116 GLEAN mRNA 73360 77666 0.999995 + . ID=CGI_10009124; scaffold1116 GLEAN mRNA 78557 84929 0.498013 - . ID=CGI_10009125; scaffold1116 GLEAN promoter 84930 85929 0.498013 - . ID=CGI_10009125; scaffold1116 GLEAN promoter 85743 86742 0.999999 + . ID=CGI_10009126; scaffold1116 GLEAN mRNA 86743 96646 0.999999 + . ID=CGI_10009126; scaffold1116 TRF Tandem_Repeat 92760 92826 127 + . . scaffold1116 TRF Tandem_Repeat 94197 95143 697 + . . scaffold1116 TRF Tandem_Repeat 96851 96890 80 + . . scaffold1116 GLEAN mRNA 97256 99751 1 - . ID=CGI_10009127; scaffold1116 GLEAN promoter 99752 100751 1 - . ID=CGI_10009127; scaffold1116 GLEAN promoter 103299 104298 0.999664 + . ID=CGI_10009128; scaffold1116 GLEAN mRNA 104299 105676 0.999664 + . ID=CGI_10009128; scaffold1116 TRF Tandem_Repeat 107083 107171 54 + . . scaffold1116 GLEAN promoter 113492 114491 1 + . ID=CGI_10009129; scaffold1116 GLEAN mRNA 114492 125932 1 + . ID=CGI_10009129; scaffold1116 TRF Tandem_Repeat 115091 115140 73 + . . scaffold1116 TRF Tandem_Repeat 116467 116887 695 + . . scaffold1116 TRF Tandem_Repeat 117107 117323 224 + . . scaffold1116 TRF Tandem_Repeat 117117 117323 256 + . . scaffold1116 TRF Tandem_Repeat 118929 119145 224 + . . scaffold1116 TRF Tandem_Repeat 118939 119145 256 + . . scaffold1116 TRF Tandem_Repeat 120906 121624 1257 + . . scaffold1116 TRF Tandem_Repeat 131598 131651 108 + . . scaffold1116 GLEAN mRNA 131847 133136 0.999405 - . ID=CGI_10009130; scaffold1116 GLEAN promoter 133137 134136 0.999405 - . ID=CGI_10009130; scaffold1116 TRF Tandem_Repeat 137165 137575 214 + . . scaffold1116 TRF Tandem_Repeat 137308 137575 323 + . . scaffold1116 GLEAN promoter 138856 139855 1 + . ID=CGI_10009131; scaffold1116 GLEAN mRNA 139856 140194 1 + . ID=CGI_10009131; scaffold1116 GLEAN promoter 143288 144287 1 + . ID=CGI_10009132; scaffold1116 GLEAN mRNA 144288 153983 1 + . ID=CGI_10009132; scaffold1116 TRF Tandem_Repeat 147942 148012 142 + . . scaffold1116 TRF Tandem_Repeat 157579 157628 63 + . . scaffold1116 GLEAN mRNA 158249 188024 0.452122 - . ID=CGI_10009133; scaffold1116 TRF Tandem_Repeat 160076 160122 94 + . . scaffold1116 TRF Tandem_Repeat 173804 173850 94 + . . scaffold1116 TRF Tandem_Repeat 175545 175584 80 + . . scaffold1116 GLEAN promoter 188025 189024 0.452122 - . ID=CGI_10009133; scaffold1116 TRF Tandem_Repeat 189240 189329 171 + . . scaffold1116 TRF Tandem_Repeat 200401 200449 98 + . . scaffold1116 TRF Tandem_Repeat 201468 201508 82 + . . scaffold1116 GLEAN mRNA 202815 206019 0.999996 - . ID=CGI_10009134; scaffold1116 GLEAN promoter 205321 206320 1 + . ID=CGI_10009135; scaffold1116 GLEAN promoter 206020 207019 0.999996 - . ID=CGI_10009134; scaffold1116 GLEAN mRNA 206321 224397 1 + . ID=CGI_10009135; scaffold1116 TRF Tandem_Repeat 211109 211618 732 + . . scaffold1116 TRF Tandem_Repeat 212139 212202 110 + . . scaffold1116 TRF Tandem_Repeat 212734 213790 971 + . . scaffold1117 GLEAN mRNA 4399 7049 1 - . ID=CGI_10002968; scaffold1117 GLEAN promoter 7050 8049 1 - . ID=CGI_10002968; scaffold1117 WUBlastX LINE_Proto2 7126 7170 20 - . . scaffold1117 WUBlastX LINE_L1-Tx1 7414 7479 30 - . . scaffold1117 WUBlastX LINE_L1-Tx1 7478 7978 122 - . . scaffold1117 WUBlastX LINE_L1 7784 8485 151 - . . scaffold1117 WUBlastX LINE_L1-Tx1 7979 8488 177 - . . scaffold1117 WUBlastX LINE_L1-Tx1 8054 8482 242 - . . scaffold1117 WUBlastX LINE_L1-Tx1 8493 9623 385 - . . scaffold1117 WUBlastX LINE_L1-Tx1 8852 10405 460 - . . scaffold1117 GLEAN promoter 10683 11682 0.793024 + . ID=CGI_10002970; scaffold1117 GLEAN mRNA 11521 11871 0.999068 - . ID=CGI_10002969; scaffold1117 GLEAN mRNA 11683 14467 0.793024 + . ID=CGI_10002970; scaffold1117 GLEAN promoter 11872 12871 0.999068 - . ID=CGI_10002969; scaffold1117 WUBlastX LINE_L1-Tx1 11980 12648 76 - . . scaffold1117 GLEAN mRNA 17514 19244 1 - . ID=CGI_10002971; scaffold1117 GLEAN promoter 19245 20244 1 - . ID=CGI_10002971; scaffold1117 TRF Tandem_Repeat 21195 23344 2620 + . . scaffold1117 TRF Tandem_Repeat 26586 26636 102 + . . scaffold1117 GLEAN mRNA 31389 33119 0.999661 - . ID=CGI_10002972; scaffold1117 GLEAN promoter 33120 34119 0.999661 - . ID=CGI_10002972; scaffold1117 TRF Tandem_Repeat 36401 36460 120 + . . scaffold1117 WUBlastX LINE_RTE-X 39179 39418 50 - . . scaffold1117 WUBlastX LINE_RTE-X 39414 42548 869 - . . scaffold1117 WUBlastX LINE_L1-Tx1 42569 42931 63 - . . scaffold1117 WUBlastX LINE_L1 42686 42931 126 - . . scaffold1117 TRF Tandem_Repeat 43177 43215 78 + . . scaffold1117 TRF Tandem_Repeat 43372 43411 80 + . . scaffold1117 TRF Tandem_Repeat 45637 45686 59 + . . scaffold1117 GLEAN promoter 46891 47890 0.999027 + . ID=CGI_10002973; scaffold1117 GLEAN mRNA 47891 52528 0.999027 + . ID=CGI_10002973; scaffold1117 TRF Tandem_Repeat 51620 51666 94 + . . scaffold1117 WUBlastX DNA_Crypton 53257 53460 87 - . . scaffold1117 WUBlastX DNA_Crypton 57309 57824 44 - . . scaffold1117 TRF Tandem_Repeat 60177 60222 92 + . . scaffold1118 GLEAN promoter 1 54 0.999372 + . ID=CGI_10002121; scaffold1118 GLEAN mRNA 55 1296 0.999372 + . ID=CGI_10002121; scaffold1118 GLEAN mRNA 3200 3541 0.995871 - . ID=CGI_10002122; scaffold1118 GLEAN promoter 3542 4541 0.995871 - . ID=CGI_10002122; scaffold1118 GLEAN mRNA 4041 4493 0.999999 - . ID=CGI_10002123; scaffold1118 GLEAN promoter 4494 5493 0.999999 - . ID=CGI_10002123; scaffold1118 GLEAN mRNA 4727 5212 0.996819 - . ID=CGI_10002124; scaffold1118 GLEAN promoter 5213 6212 0.996819 - . ID=CGI_10002124; scaffold1118 GLEAN mRNA 5215 5406 0.624252 - . ID=CGI_10002125; scaffold1118 GLEAN promoter 5407 6406 0.624252 - . ID=CGI_10002125; scaffold1118 GLEAN promoter 6720 7719 1 + . ID=CGI_10002126; scaffold1118 GLEAN mRNA 7720 8037 1 + . ID=CGI_10002126; scaffold1118 GLEAN mRNA 8229 9203 0.990523 - . ID=CGI_10002127; scaffold1118 GLEAN promoter 9204 10203 0.990523 - . ID=CGI_10002127; scaffold1118 GLEAN mRNA 10819 11202 0.992212 - . ID=CGI_10002128; scaffold1118 GLEAN promoter 11203 12202 0.992212 - . ID=CGI_10002128; scaffold1118 GLEAN mRNA 12231 12782 1 - . ID=CGI_10002130; scaffold1118 GLEAN promoter 12783 13782 1 - . ID=CGI_10002130; scaffold1118 GLEAN mRNA 13377 14417 1 - . ID=CGI_10002132; scaffold1118 GLEAN promoter 14418 15417 1 - . ID=CGI_10002132; scaffold1118 GLEAN mRNA 17297 19168 0.749052 - . ID=CGI_10002135; scaffold1118 GLEAN promoter 19169 20168 0.749052 - . ID=CGI_10002135; scaffold1118 GLEAN promoter 32154 33153 0.482547 + . ID=CGI_10002137; scaffold1118 GLEAN mRNA 33154 35870 0.482547 + . ID=CGI_10002137; scaffold1118 GLEAN mRNA 37408 37953 0.592172 - . ID=CGI_10002139; scaffold1118 GLEAN promoter 37954 38004 0.592172 - . ID=CGI_10002139; scaffold1119 WUBlastX LTR_Gypsy 1302 1892 113 - . . scaffold1119 WUBlastX LTR_Gypsy 1395 5321 3280 - . . scaffold1119 WUBlastX LTR_Gypsy 4695 5438 23 - . . scaffold1119 WUBlastX DNA_IS4EU 6334 6561 65 + . . scaffold1119 WUBlastX DNA_IS4EU 7072 7308 22 + . . scaffold1119 WUBlastX DNA_IS4EU 7731 8090 178 - . . scaffold1119 WUBlastX DNA_IS4EU 8089 8328 149 - . . scaffold1119 WUBlastX DNA_IS4EU 8306 8461 74 - . . scaffold1119 WUBlastX DNA_Kolobok-IS4 8330 8512 57 - . . scaffold1119 WUBlastX DNA_IS4EU 9044 9670 100 + . . scaffold1119 WUBlastX DNA_IS4EU 9137 9523 112 + . . scaffold1119 WUBlastX DNA_IS4EU 9544 9717 96 + . . scaffold1119 GLEAN promoter 12791 13790 0.997964 + . ID=CGI_10009597; scaffold1119 GLEAN mRNA 13791 36563 0.997964 + . ID=CGI_10009597; scaffold1119 TRF Tandem_Repeat 20078 20120 77 + . . scaffold1119 WUBlastX DNA_IS4EU 36710 37039 24 + . . scaffold1119 WUBlastX DNA_IS4EU 37206 37292 34 + . . scaffold1119 WUBlastX DNA_IS4EU 38066 39070 379 - . . scaffold1119 WUBlastX DNA_IS4EU 40437 40580 24 - . . scaffold1119 WUBlastX DNA_IS4EU 40752 40868 28 - . . scaffold1119 TRF Tandem_Repeat 42060 42165 83 + . . scaffold1119 TRF Tandem_Repeat 43864 43997 106 + . . scaffold1119 TRF Tandem_Repeat 45957 46078 90 + . . scaffold1119 TRF Tandem_Repeat 49558 49624 71 + . . scaffold1119 GLEAN promoter 69464 70463 0.999929 + . ID=CGI_10009598; scaffold1119 GLEAN mRNA 70464 71522 0.999929 + . ID=CGI_10009598; scaffold1119 GLEAN promoter 71273 72272 0.999039 + . ID=CGI_10009599; scaffold1119 GLEAN mRNA 72273 72461 0.999039 + . ID=CGI_10009599; scaffold1119 GLEAN promoter 75593 76592 0.92914 + . ID=CGI_10009600; scaffold1119 TRF Tandem_Repeat 76281 76308 56 + . . scaffold1119 GLEAN mRNA 76593 82794 0.92914 + . ID=CGI_10009600; scaffold1119 TRF Tandem_Repeat 109877 109930 72 + . . scaffold1119 GLEAN mRNA 115207 123984 1 - . ID=CGI_10009601; scaffold1119 GLEAN promoter 123985 124984 1 - . ID=CGI_10009601; scaffold1119 GLEAN promoter 127901 128900 0.733495 + . ID=CGI_10009602; scaffold1119 GLEAN mRNA 128901 129164 0.733495 + . ID=CGI_10009602; scaffold1119 GLEAN mRNA 130182 132056 0.481511 - . ID=CGI_10009603; scaffold1119 GLEAN promoter 132057 133056 0.481511 - . ID=CGI_10009603; scaffold1119 GLEAN promoter 132915 133914 0.654676 + . ID=CGI_10009604; scaffold1119 GLEAN mRNA 133915 143385 0.654676 + . ID=CGI_10009604; scaffold1119 WUBlastX LINE_L2 140738 140806 21 - . . scaffold1119 GLEAN mRNA 141381 182559 0.993006 - . ID=CGI_10009605; scaffold1119 WUBlastX LINE_CR1 141568 142482 746 - . . scaffold1119 WUBlastX LINE_CR1 141574 142674 686 - . . scaffold1119 WUBlastX LINE_CR1 141706 142875 225 - . . scaffold1119 GLEAN promoter 144170 145169 0.777485 + . ID=CGI_10009606; scaffold1119 GLEAN mRNA 145170 151257 0.777485 + . ID=CGI_10009606; scaffold1119 TRF Tandem_Repeat 149526 149574 98 + . . scaffold1119 TRF Tandem_Repeat 159633 160002 634 + . . scaffold1119 WUBlastX DNA_TcMar-Tc2 162302 163141 141 - . . scaffold1119 WUBlastX DNA_TcMar-Tc2 162470 163117 194 - . . scaffold1119 WUBlastX DNA_TcMar-Tc2 163182 163340 24 - . . scaffold1119 WUBlastX LTR_Gypsy 170581 171435 442 - . . scaffold1119 GLEAN promoter 182560 183559 0.993006 - . ID=CGI_10009605; scaffold1119 GLEAN mRNA 183252 183488 1 - . ID=CGI_10009607; scaffold1119 GLEAN promoter 183489 184488 1 - . ID=CGI_10009607; scaffold1119 GLEAN promoter 190518 191517 0.985022 + . ID=CGI_10009608; scaffold1119 GLEAN mRNA 191518 194765 0.985022 + . ID=CGI_10009608; scaffold1119 GLEAN promoter 194926 195925 0.731623 + . ID=CGI_10009609; scaffold1119 GLEAN mRNA 195926 208097 0.731623 + . ID=CGI_10009609; scaffold1119 GLEAN mRNA 196782 197867 1 - . ID=CGI_10009610; scaffold1119 GLEAN promoter 197868 198867 1 - . ID=CGI_10009610; scaffold1119 TRF Tandem_Repeat 199169 199222 101 + . . scaffold1119 WUBlastX LINE_RTE-BovB 222704 223048 41 - . . scaffold1119 WUBlastX LINE_RTE-BovB 222716 223000 59 - . . scaffold1119 WUBlastX LINE_RTE-BovB 222722 222943 67 - . . scaffold1119 GLEAN mRNA 223832 229842 0.83374 - . ID=CGI_10009611; scaffold1119 GLEAN promoter 229843 230842 0.83374 - . ID=CGI_10009611; scaffold1119 TRF Tandem_Repeat 230001 230050 100 + . . scaffold1119 WUBlastX LINE_RTE-X 233353 234945 692 - . . scaffold1121 TRF Tandem_Repeat 1136 1837 827 + . . scaffold1121 GLEAN mRNA 3000 4031 0.651135 - . ID=CGI_10006496; scaffold1121 GLEAN promoter 4032 5031 0.651135 - . ID=CGI_10006496; scaffold1121 GLEAN mRNA 7669 7983 0.999991 - . ID=CGI_10006497; scaffold1121 GLEAN promoter 7984 8983 0.999991 - . ID=CGI_10006497; scaffold1121 TRF Tandem_Repeat 12574 12617 88 + . . scaffold1121 WUBlastX LINE_L1 13159 13944 277 + . . scaffold1121 WUBlastX LINE_RTE-X 13999 17286 800 + . . scaffold1121 WUBlastX LINE_RTE-X 16651 17403 74 + . . scaffold1121 WUBlastX LINE_CR1 22643 22759 24 - . . scaffold1121 WUBlastX LINE_L2 22685 22975 110 - . . scaffold1121 WUBlastX LINE_L2 23005 23259 107 - . . scaffold1121 WUBlastX LINE_L2 23277 23540 131 - . . scaffold1121 WUBlastX LINE_L2 23307 23582 81 - . . scaffold1121 WUBlastX LINE_L2 23561 23662 48 - . . scaffold1121 WUBlastX LINE_CR1-L2 23582 23686 38 - . . scaffold1121 TRF Tandem_Repeat 30659 30704 74 + . . scaffold1121 GLEAN mRNA 32626 67985 0.999674 - . ID=CGI_10006498; scaffold1121 TRF Tandem_Repeat 35365 35413 98 + . . scaffold1121 TRF Tandem_Repeat 47616 47645 60 + . . scaffold1121 TRF Tandem_Repeat 51497 51567 142 + . . scaffold1121 TRF Tandem_Repeat 55099 55125 54 + . . scaffold1121 GLEAN promoter 67986 68985 0.999674 - . ID=CGI_10006498; scaffold1121 GLEAN mRNA 69474 82094 0.951208 - . ID=CGI_10006499; scaffold1121 GLEAN promoter 82095 83094 0.951208 - . ID=CGI_10006499; scaffold1121 GLEAN mRNA 84243 84479 0.999372 - . ID=CGI_10006500; scaffold1121 GLEAN promoter 84480 85479 0.999372 - . ID=CGI_10006500; scaffold1121 GLEAN promoter 85111 86110 0.915985 + . ID=CGI_10006501; scaffold1121 GLEAN mRNA 86111 90881 0.915985 + . ID=CGI_10006501; scaffold1121 TRF Tandem_Repeat 88738 89065 500 + . . scaffold1121 GLEAN mRNA 92961 101942 0.996894 - . ID=CGI_10006502; scaffold1121 TRF Tandem_Repeat 97692 97737 92 + . . scaffold1121 GLEAN promoter 101943 102942 0.996894 - . ID=CGI_10006502; scaffold1121 GLEAN mRNA 103509 104048 0.481817 - . ID=CGI_10006503; scaffold1121 GLEAN promoter 104049 105048 0.481817 - . ID=CGI_10006503; scaffold1121 GLEAN promoter 105539 106538 0.863777 + . ID=CGI_10006504; scaffold1121 TRF Tandem_Repeat 106188 106239 86 + . . scaffold1121 GLEAN mRNA 106539 124306 0.863777 + . ID=CGI_10006504; scaffold1121 TRF Tandem_Repeat 110547 110636 153 + . . scaffold1121 TRF Tandem_Repeat 110547 110636 153 + . . scaffold1121 GLEAN promoter 123801 124800 0.9996 + . ID=CGI_10006506; scaffold1121 GLEAN mRNA 124336 128052 0.690377 - . ID=CGI_10006505; scaffold1121 GLEAN mRNA 124801 133384 0.9996 + . ID=CGI_10006506; scaffold1121 GLEAN promoter 128053 129052 0.690377 - . ID=CGI_10006505; scaffold1121 TRF Tandem_Repeat 132669 132817 201 + . . scaffold1121 GLEAN mRNA 136074 147948 0.722367 - . ID=CGI_10006507; scaffold1121 WUBlastX DNA_hAT-Tip100 140644 140964 46 - . . scaffold1121 WUBlastX DNA_hAT-Tip100 140752 140997 94 - . . scaffold1121 WUBlastX DNA_hAT-Tip100 140767 140970 98 - . . scaffold1121 TRF Tandem_Repeat 144251 144638 425 + . . scaffold1121 GLEAN promoter 147949 148948 0.722367 - . ID=CGI_10006507; scaffold1121 TRF Tandem_Repeat 151102 152021 1278 + . . scaffold1121 TRF Tandem_Repeat 153528 153570 59 + . . scaffold1121 TRF Tandem_Repeat 153609 153658 66 + . . scaffold1123 TRF Tandem_Repeat 782 855 141 + . . scaffold1123 GLEAN promoter 3950 4949 0.554793 + . ID=CGI_10018729; scaffold1123 GLEAN mRNA 4950 19691 0.554793 + . ID=CGI_10018729; scaffold1123 TRF Tandem_Repeat 7062 7091 51 + . . scaffold1123 WUBlastX LINE_RTE-BovB 13815 14171 141 + . . scaffold1123 WUBlastX LINE_RTE-BovB 13920 14234 226 + . . scaffold1123 WUBlastX LINE_RTE-BovB 13959 14333 134 + . . scaffold1123 WUBlastX LINE_RTE-BovB 14301 14729 153 + . . scaffold1123 WUBlastX LINE_RTE-BovB 14388 14735 391 + . . scaffold1123 WUBlastX LINE_RTE-BovB 14704 15384 494 + . . scaffold1123 WUBlastX LINE_RTE-BovB 14905 15474 54 + . . scaffold1123 GLEAN promoter 18859 19858 0.860193 + . ID=CGI_10018730; scaffold1123 GLEAN mRNA 19859 33846 0.860193 + . ID=CGI_10018730; scaffold1123 GLEAN promoter 40298 41297 0.98956 + . ID=CGI_10018731; scaffold1123 TRF Tandem_Repeat 40595 40648 108 + . . scaffold1123 GLEAN mRNA 41298 42533 0.98956 + . ID=CGI_10018731; scaffold1123 TRF Tandem_Repeat 43537 44943 1765 + . . scaffold1123 TRF Tandem_Repeat 48615 48656 59 + . . scaffold1123 TRF Tandem_Repeat 50145 50212 136 + . . scaffold1123 GLEAN mRNA 54343 54549 0.999371 - . ID=CGI_10018732; scaffold1123 GLEAN promoter 54550 55549 0.999371 - . ID=CGI_10018732; scaffold1123 TRF Tandem_Repeat 66821 68816 2945 + . . scaffold1123 TRF Tandem_Repeat 66847 68816 2950 + . . scaffold1123 TRF Tandem_Repeat 78130 78194 85 + . . scaffold1123 TRF Tandem_Repeat 79813 79854 66 + . . scaffold1123 WUBlastX LTR_Gypsy 84967 85842 52 - . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 85156 85758 194 - . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 85719 87401 359 - . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 87403 87759 332 - . . scaffold1123 WUBlastX LTR_Gypsy 87433 87831 233 - . . scaffold1123 WUBlastX LTR_Gypsy 87765 87905 81 - . . scaffold1123 WUBlastX LTR_Gypsy 87860 88168 83 - . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 87860 88009 101 - . . scaffold1123 WUBlastX LTR_Gypsy 87908 88105 86 - . . scaffold1123 WUBlastX LTR_Gypsy 88024 88398 43 - . . scaffold1123 WUBlastX LTR_Gypsy 88975 89403 63 - . . scaffold1123 WUBlastX LINE_Penelope 98967 99152 52 + . . scaffold1123 WUBlastX LINE_Penelope 99027 99185 40 + . . scaffold1123 WUBlastX LTR_Pao 101635 101751 22 + . . scaffold1123 WUBlastX LTR_Pao 101656 103209 145 + . . scaffold1123 WUBlastX LTR_Pao 102259 103233 204 + . . scaffold1123 WUBlastX LTR_Pao 102307 103119 225 + . . scaffold1123 WUBlastX LTR_Pao 103198 103350 49 - . . scaffold1123 WUBlastX LTR_Pao 103329 103400 34 + . . scaffold1123 WUBlastX LINE_Penelope 103422 103769 35 + . . scaffold1123 TRF Tandem_Repeat 107269 107323 110 + . . scaffold1123 TRF Tandem_Repeat 107321 107360 80 + . . scaffold1123 TRF Tandem_Repeat 111290 111341 104 + . . scaffold1123 TRF Tandem_Repeat 125445 125486 75 + . . scaffold1123 WUBlastX LINE_CR1-L2 129505 130002 35 + . . scaffold1123 WUBlastX LINE_CR1-L2 129565 129984 73 + . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 135932 136759 214 + . . scaffold1123 WUBlastX LTR_Gypsy 136774 137076 94 + . . scaffold1123 WUBlastX LTR_Gypsy-Cigr 136849 138021 323 + . . scaffold1123 WUBlastX LTR_Gypsy 137334 140468 1917 + . . scaffold1123 TRF Tandem_Repeat 144290 144335 92 + . . scaffold1123 TRF Tandem_Repeat 146631 146748 193 + . . scaffold1123 WUBlastX DNA_TcMar-Marin 149081 149698 155 - . . scaffold1123 GLEAN promoter 149135 150134 1 + . ID=CGI_10018733; scaffold1123 GLEAN mRNA 150135 151472 1 + . ID=CGI_10018733; scaffold1123 TRF Tandem_Repeat 160044 160349 551 + . . scaffold1123 TRF Tandem_Repeat 161209 161422 142 + . . scaffold1123 TRF Tandem_Repeat 161230 161462 154 + . . scaffold1123 WUBlastX DNA_TcMar-Marin 164429 164998 165 + . . scaffold1123 WUBlastX DNA_TcMar-Marin 164528 165013 212 + . . scaffold1123 TRF Tandem_Repeat 166480 166722 74 + . . scaffold1123 TRF Tandem_Repeat 166526 166680 93 + . . scaffold1123 TRF Tandem_Repeat 192675 192703 58 + . . scaffold1123 WUBlastX LINE_L1-Tx1 192999 193610 76 - . . scaffold1123 WUBlastX LINE_L1-Tx1 193618 194136 71 - . . scaffold1123 WUBlastX LINE_L1-Tx1 193750 194139 131 - . . scaffold1123 WUBlastX LINE_L1 193954 194244 53 - . . scaffold1123 WUBlastX LINE_L1-Tx1 194186 195007 469 - . . scaffold1123 WUBlastX LINE_L1-Tx1 194944 195246 123 - . . scaffold1123 WUBlastX LINE_L1-Tx1 195279 195599 105 - . . scaffold1123 WUBlastX LINE_L1 195632 195679 22 - . . scaffold1123 WUBlastX LINE_L2 195767 195895 22 - . . scaffold1123 WUBlastX LTR_Gypsy 205565 205909 36 - . . scaffold1123 WUBlastX LTR_Gypsy 205873 207711 1682 - . . scaffold1123 WUBlastX LTR_Gypsy 208289 209557 653 - . . scaffold1123 TRF Tandem_Repeat 216518 216569 104 + . . scaffold1123 GLEAN promoter 217721 218720 0.990714 + . ID=CGI_10018734; scaffold1123 GLEAN mRNA 218721 230417 0.990714 + . ID=CGI_10018734; scaffold1123 TRF Tandem_Repeat 251638 251687 66 + . . scaffold1123 GLEAN promoter 253591 254590 0.990001 + . ID=CGI_10018735; scaffold1123 GLEAN mRNA 254591 263753 0.990001 + . ID=CGI_10018735; scaffold1123 TRF Tandem_Repeat 256097 256141 90 + . . scaffold1123 TRF Tandem_Repeat 256699 256740 84 + . . scaffold1123 WUBlastX LTR_Ngaro 263814 264335 179 + . . scaffold1123 WUBlastX LTR_Ngaro 263985 264428 76 + . . scaffold1123 WUBlastX LTR_Ngaro 264565 265779 762 + . . scaffold1123 WUBlastX LTR_Ngaro 265743 265925 78 + . . scaffold1123 WUBlastX LTR_Ngaro 265928 266143 98 + . . scaffold1123 WUBlastX LTR_Ngaro 266271 266813 228 + . . scaffold1123 WUBlastX LTR_Ngaro 266837 267025 87 + . . scaffold1123 TRF Tandem_Repeat 268202 268262 72 + . . scaffold1123 TRF Tandem_Repeat 269285 269382 51 + . . scaffold1123 TRF Tandem_Repeat 269285 269341 64 + . . scaffold1123 TRF Tandem_Repeat 269300 269371 62 + . . scaffold1123 TRF Tandem_Repeat 272180 272234 51 + . . scaffold1123 TRF Tandem_Repeat 275995 276049 51 + . . scaffold1123 WUBlastX DNA_TcMar-Tc1 287874 288083 68 - . . scaffold1123 WUBlastX DNA_TcMar-Tc1 288083 288592 96 - . . scaffold1123 WUBlastX DNA_TcMar-Tc1 288083 288502 97 - . . scaffold1123 GLEAN promoter 289147 290146 0.651042 + . ID=CGI_10018736; scaffold1123 GLEAN mRNA 290147 290961 0.651042 + . ID=CGI_10018736; scaffold1123 WUBlastX LINE_RTE-X 305848 306309 36 + . . scaffold1123 WUBlastX LINE_RTE-X 305983 306306 69 + . . scaffold1123 WUBlastX LINE_RTE-X 306094 306303 119 + . . scaffold1123 WUBlastX LINE_CR1 306148 306345 60 + . . scaffold1123 WUBlastX LINE_RTE-X 306350 306772 32 + . . scaffold1123 WUBlastX LINE_RTE-X 306587 306781 41 + . . scaffold1123 WUBlastX LINE_RTE-X 306587 306865 37 + . . scaffold1123 WUBlastX LINE_RTE-X 306879 306947 29 + . . scaffold1123 WUBlastX LINE_RTE-X 306900 306959 25 + . . scaffold1123 GLEAN mRNA 333329 335551 0.999996 - . ID=CGI_10018737; scaffold1123 WUBlastX DNA_IS4EU 335225 335719 26 - . . scaffold1123 WUBlastX DNA_Kolobok-IS4 335354 335704 68 - . . scaffold1123 GLEAN promoter 335552 336551 0.999996 - . ID=CGI_10018737; scaffold1123 GLEAN mRNA 335890 336924 0.999566 - . ID=CGI_10018738; scaffold1123 GLEAN promoter 336925 337924 0.999566 - . ID=CGI_10018738; scaffold1123 GLEAN mRNA 342019 343118 1 - . ID=CGI_10018739; scaffold1123 GLEAN promoter 343119 344118 1 - . ID=CGI_10018739; scaffold1123 TRF Tandem_Repeat 346788 346832 63 + . . scaffold1123 TRF Tandem_Repeat 363950 363997 87 + . . scaffold1123 GLEAN mRNA 368453 368902 1 - . ID=CGI_10018740; scaffold1123 GLEAN promoter 368903 369902 1 - . ID=CGI_10018740; scaffold1123 TRF Tandem_Repeat 370830 370871 75 + . . scaffold1123 TRF Tandem_Repeat 371357 371406 100 + . . scaffold1123 GLEAN mRNA 374883 375752 1 - . ID=CGI_10018741; scaffold1123 GLEAN promoter 375753 376752 1 - . ID=CGI_10018741; scaffold1123 TRF Tandem_Repeat 389562 389624 58 + . . scaffold1123 TRF Tandem_Repeat 405360 405456 55 + . . scaffold1123 GLEAN promoter 408474 409473 0.812314 + . ID=CGI_10018742; scaffold1123 GLEAN mRNA 409474 428898 0.812314 + . ID=CGI_10018742; scaffold1123 TRF Tandem_Repeat 413311 413628 223 + . . scaffold1123 TRF Tandem_Repeat 413623 414248 587 + . . scaffold1123 TRF Tandem_Repeat 427699 427751 106 + . . scaffold1123 WUBlastX LTR_Gypsy 429171 429290 41 - . . scaffold1123 WUBlastX LTR_Gypsy 429200 429448 73 - . . scaffold1123 WUBlastX LTR_Gypsy 429266 429424 80 - . . scaffold1123 WUBlastX LTR_Gypsy 429290 429448 75 - . . scaffold1123 WUBlastX LTR_Gypsy 429463 429669 98 - . . scaffold1123 WUBlastX LTR_Gypsy 429466 429852 68 - . . scaffold1123 WUBlastX LTR_Gypsy 429478 429939 34 - . . scaffold1123 WUBlastX LTR_Gypsy 429923 429997 22 - . . scaffold1123 WUBlastX LTR_Gypsy 429965 430030 33 - . . scaffold1123 WUBlastX LTR_Gypsy 431472 432032 76 - . . scaffold1123 WUBlastX LTR_Gypsy 431481 431660 89 - . . scaffold1123 WUBlastX LTR_Gypsy 431523 431663 101 - . . scaffold1123 WUBlastX LTR_Gypsy 432010 432237 69 - . . scaffold1123 GLEAN promoter 436200 437199 0.647294 + . ID=CGI_10018743; scaffold1123 GLEAN mRNA 437200 459051 0.647294 + . ID=CGI_10018743; scaffold1123 TRF Tandem_Repeat 445896 445971 73 + . . scaffold1123 TRF Tandem_Repeat 495914 495978 94 + . . scaffold1123 TRF Tandem_Repeat 522938 523077 228 + . . scaffold1123 GLEAN mRNA 529156 531963 0.979491 - . ID=CGI_10018745; scaffold1123 GLEAN promoter 531964 532963 0.979491 - . ID=CGI_10018745; scaffold1123 TRF Tandem_Repeat 533797 533874 149 + . . scaffold1123 TRF Tandem_Repeat 536271 536398 157 + . . scaffold1123 TRF Tandem_Repeat 536295 536428 160 + . . scaffold1123 TRF Tandem_Repeat 537434 537480 94 + . . scaffold1123 TRF Tandem_Repeat 542426 542482 105 + . . scaffold1123 GLEAN mRNA 549862 554650 1 - . ID=CGI_10018746; scaffold1123 TRF Tandem_Repeat 554046 554079 68 + . . scaffold1123 GLEAN promoter 554651 555650 1 - . ID=CGI_10018746; scaffold1123 GLEAN mRNA 559047 567227 0.999675 - . ID=CGI_10018747; scaffold1123 TRF Tandem_Repeat 562872 563841 654 + . . scaffold1123 TRF Tandem_Repeat 562979 563797 527 + . . scaffold1123 GLEAN promoter 567228 568227 0.999675 - . ID=CGI_10018747; scaffold1123 TRF Tandem_Repeat 568222 568267 83 + . . scaffold1124 WUBlastX LTR_Gypsy 7384 7422 20 - . . scaffold1124 WUBlastX LTR_Gypsy 7539 8399 198 - . . scaffold1124 WUBlastX LTR_Gypsy 7713 8405 648 - . . scaffold1124 WUBlastX LTR_Gypsy 8393 10210 1242 - . . scaffold1124 WUBlastX LTR_Gypsy 10216 10692 532 - . . scaffold1124 TRF Tandem_Repeat 12910 12944 70 + . . scaffold1124 TRF Tandem_Repeat 14988 15925 1102 + . . scaffold1124 GLEAN mRNA 35622 40415 1 - . ID=CGI_10003490; scaffold1124 GLEAN promoter 40416 41415 1 - . ID=CGI_10003490; scaffold1124 TRF Tandem_Repeat 42424 42563 97 + . . scaffold1124 TRF Tandem_Repeat 42567 42752 185 + . . scaffold1124 TRF Tandem_Repeat 46780 46878 131 + . . scaffold1124 GLEAN mRNA 48386 50216 0.992451 - . ID=CGI_10003491; scaffold1124 TRF Tandem_Repeat 49797 49842 92 + . . scaffold1124 GLEAN promoter 50217 51216 0.992451 - . ID=CGI_10003491; scaffold1124 GLEAN mRNA 56833 58503 1 - . ID=CGI_10003492; scaffold1124 GLEAN promoter 58504 59503 1 - . ID=CGI_10003492; scaffold1124 TRF Tandem_Repeat 70625 70681 96 + . . scaffold1124 TRF Tandem_Repeat 73395 74426 596 + . . scaffold1125 GLEAN mRNA 2149 15483 1 - . ID=CGI_10012322; scaffold1125 GLEAN promoter 5739 6738 0.993413 + . ID=CGI_10012323; scaffold1125 GLEAN mRNA 6739 22479 0.993413 + . ID=CGI_10012323; scaffold1125 TRF Tandem_Repeat 11570 12380 920 + . . scaffold1125 TRF Tandem_Repeat 13160 13197 51 + . . scaffold1125 GLEAN promoter 15484 16483 1 - . ID=CGI_10012322; scaffold1125 TRF Tandem_Repeat 25150 25178 58 + . . scaffold1125 TRF Tandem_Repeat 36911 37778 1348 + . . scaffold1125 GLEAN promoter 46884 47883 1 + . ID=CGI_10012324; scaffold1125 GLEAN mRNA 47884 50397 1 + . ID=CGI_10012324; scaffold1125 TRF Tandem_Repeat 51238 51276 51 + . . scaffold1125 TRF Tandem_Repeat 53922 54004 166 + . . scaffold1125 WUBlastX DNA_NOF 59664 60488 20 - . . scaffold1125 WUBlastX DNA_IS4EU 59811 60644 32 - . . scaffold1125 WUBlastX DNA_MuDR 60405 60719 127 - . . scaffold1125 GLEAN mRNA 64303 69051 0.969115 - . ID=CGI_10012325; scaffold1125 GLEAN promoter 65834 66833 0.989179 + . ID=CGI_10012326; scaffold1125 GLEAN mRNA 66834 74995 0.989179 + . ID=CGI_10012326; scaffold1125 GLEAN promoter 69052 70051 0.969115 - . ID=CGI_10012325; scaffold1125 TRF Tandem_Repeat 76129 76556 667 + . . scaffold1125 GLEAN mRNA 77765 78817 0.969115 - . ID=CGI_10012327; scaffold1125 GLEAN promoter 78818 79817 0.969115 - . ID=CGI_10012327; scaffold1125 GLEAN promoter 79363 80362 0.999674 + . ID=CGI_10012328; scaffold1125 GLEAN mRNA 80363 95542 0.999674 + . ID=CGI_10012328; scaffold1125 GLEAN promoter 96135 97134 1 + . ID=CGI_10012329; scaffold1125 GLEAN mRNA 97135 114021 1 + . ID=CGI_10012329; scaffold1125 TRF Tandem_Repeat 112400 112622 195 + . . scaffold1125 GLEAN mRNA 118191 120339 0.999415 - . ID=CGI_10012330; scaffold1125 GLEAN promoter 120340 121339 0.999415 - . ID=CGI_10012330; scaffold1125 TRF Tandem_Repeat 122785 122832 96 + . . scaffold1125 TRF Tandem_Repeat 124080 124118 78 + . . scaffold1125 GLEAN promoter 126608 127607 1 + . ID=CGI_10012331; scaffold1125 GLEAN mRNA 127608 139631 1 + . ID=CGI_10012331; scaffold1125 GLEAN mRNA 130320 136871 1 - . ID=CGI_10012332; scaffold1125 GLEAN promoter 136872 137871 1 - . ID=CGI_10012332; scaffold1125 TRF Tandem_Repeat 137277 137312 72 + . . scaffold1125 GLEAN mRNA 141709 147575 1 - . ID=CGI_10012333; scaffold1125 GLEAN promoter 147576 148575 1 - . ID=CGI_10012333; scaffold1125 WUBlastX LINE_RTE-X 150013 150480 162 - . . scaffold1125 WUBlastX LINE_RTE-X 150025 150660 88 - . . scaffold1125 WUBlastX LINE_RTE-X 150025 150393 175 - . . scaffold1125 GLEAN promoter 151171 152170 0.970005 + . ID=CGI_10012334; scaffold1125 GLEAN mRNA 152171 155916 0.970005 + . ID=CGI_10012334; scaffold1125 WUBlastX DNA_IS4EU 158662 159576 288 - . . scaffold1125 WUBlastX DNA_IS4EU 158668 159912 156 - . . scaffold1125 GLEAN mRNA 160367 177521 0.702385 - . ID=CGI_10012335; scaffold1125 TRF Tandem_Repeat 161518 161559 84 + . . scaffold1125 GLEAN promoter 177522 178521 0.702385 - . ID=CGI_10012335; scaffold1125 GLEAN mRNA 177713 182516 0.558407 - . ID=CGI_10012336; scaffold1125 GLEAN promoter 182517 183516 0.558407 - . ID=CGI_10012336; scaffold1125 GLEAN mRNA 183614 189196 0.993907 - . ID=CGI_10012337; scaffold1125 GLEAN promoter 189197 190196 0.993907 - . ID=CGI_10012337; scaffold1125 GLEAN mRNA 189933 228052 0.366465 - . ID=CGI_10012338; scaffold1125 TRF Tandem_Repeat 194556 194586 53 + . . scaffold1125 WUBlastX DNA_hAT 195933 196046 68 - . . scaffold1125 WUBlastX DNA_hAT 196307 196507 107 - . . scaffold1125 WUBlastX DNA_hAT 197646 198398 294 - . . scaffold1125 GLEAN promoter 199113 200112 1 + . ID=CGI_10012339; scaffold1125 GLEAN mRNA 200113 205453 1 + . ID=CGI_10012339; scaffold1125 TRF Tandem_Repeat 202284 202320 74 + . . scaffold1125 GLEAN promoter 214657 215656 1 + . ID=CGI_10012340; scaffold1125 GLEAN mRNA 215657 219796 1 + . ID=CGI_10012340; scaffold1125 TRF Tandem_Repeat 223467 223858 658 + . . scaffold1125 GLEAN promoter 228053 229052 0.366465 - . ID=CGI_10012338; scaffold1125 GLEAN mRNA 233451 239251 0.642063 - . ID=CGI_10012341; scaffold1125 TRF Tandem_Repeat 235462 235759 436 + . . scaffold1125 TRF Tandem_Repeat 235462 235759 481 + . . scaffold1125 TRF Tandem_Repeat 237043 237305 354 + . . scaffold1125 TRF Tandem_Repeat 237043 237305 275 + . . scaffold1125 TRF Tandem_Repeat 237072 237301 325 + . . scaffold1125 GLEAN promoter 239252 240251 0.642063 - . ID=CGI_10012341; scaffold1125 TRF Tandem_Repeat 239271 239307 65 + . . scaffold1125 TRF Tandem_Repeat 248014 248049 65 + . . scaffold1125 GLEAN promoter 257264 258263 0.367081 + . ID=CGI_10012342; scaffold1125 GLEAN mRNA 258264 306646 0.367081 + . ID=CGI_10012342; scaffold1125 TRF Tandem_Repeat 264422 264486 130 + . . scaffold1125 WUBlastX LINE_L1-Tx1 274163 274885 133 - . . scaffold1125 WUBlastX LINE_L1-Tx1 274945 276555 169 - . . scaffold1125 WUBlastX LINE_L1-Tx1 275719 276426 213 - . . scaffold1125 WUBlastX LINE_Penelope 296521 297084 89 - . . scaffold1125 WUBlastX LINE_Penelope 296665 297336 21 - . . scaffold1125 WUBlastX LINE_Penelope 296698 297153 30 - . . scaffold1125 TRF Tandem_Repeat 306899 306937 53 + . . scaffold1125 TRF Tandem_Repeat 309160 309196 74 + . . scaffold1125 GLEAN mRNA 311908 322130 0.994393 - . ID=CGI_10012343; scaffold1125 TRF Tandem_Repeat 321647 321678 50 + . . scaffold1125 GLEAN promoter 322131 323130 0.994393 - . ID=CGI_10012343; scaffold1126 WUBlastX LTR_Gypsy 2438 2638 67 - . . scaffold1126 WUBlastX LTR_Gypsy 2863 2913 33 - . . scaffold1127 GLEAN mRNA 44 22807 0.494799 - . ID=CGI_10010645; scaffold1127 TRF Tandem_Repeat 1489 1707 213 + . . scaffold1127 WUBlastX LINE_L1 5987 6322 73 - . . scaffold1127 WUBlastX LINE_L1-Tx1 6005 6250 111 - . . scaffold1127 TRF Tandem_Repeat 9342 9393 95 + . . scaffold1127 TRF Tandem_Repeat 12582 12635 78 + . . scaffold1127 TRF Tandem_Repeat 14852 14899 96 + . . scaffold1127 WUBlastX LINE_L1-Tx1 16890 17261 88 - . . scaffold1127 WUBlastX LINE_L1-Tx1 17258 17716 57 - . . scaffold1127 WUBlastX LINE_L1 17710 18129 42 - . . scaffold1127 WUBlastX LINE_L1-Tx1 18105 18785 323 - . . scaffold1127 WUBlastX LINE_L1-Tx1 18788 19771 639 - . . scaffold1127 WUBlastX LINE_L1-Tx1 19774 19947 44 - . . scaffold1127 WUBlastX LINE_L1-Tx1 19807 20025 78 - . . scaffold1127 WUBlastX LINE_L1-Tx1 19819 20079 53 - . . scaffold1127 WUBlastX LINE_L1 20076 20132 24 - . . scaffold1127 GLEAN promoter 22808 23807 0.494799 - . ID=CGI_10010645; scaffold1127 WUBlastX DNA_hAT-Ac 25147 25308 50 - . . scaffold1127 TRF Tandem_Repeat 25583 25658 152 + . . scaffold1127 TRF Tandem_Repeat 25726 25794 138 + . . scaffold1127 GLEAN mRNA 35628 37532 0.999999 - . ID=CGI_10010646; scaffold1127 GLEAN promoter 37533 38532 0.999999 - . ID=CGI_10010646; scaffold1127 GLEAN promoter 38359 39358 1 + . ID=CGI_10010647; scaffold1127 GLEAN mRNA 39359 41263 1 + . ID=CGI_10010647; scaffold1127 GLEAN mRNA 43951 45586 0.996479 - . ID=CGI_10010648; scaffold1127 GLEAN promoter 45587 46586 0.996479 - . ID=CGI_10010648; scaffold1127 GLEAN promoter 47961 48960 0.992544 + . ID=CGI_10010649; scaffold1127 GLEAN mRNA 48961 110448 0.992544 + . ID=CGI_10010649; scaffold1127 TRF Tandem_Repeat 58319 58403 62 + . . scaffold1127 TRF Tandem_Repeat 71716 71982 444 + . . scaffold1127 TRF Tandem_Repeat 99763 99797 61 + . . scaffold1127 GLEAN promoter 125138 126137 1 + . ID=CGI_10010650; scaffold1127 GLEAN mRNA 126138 129031 1 + . ID=CGI_10010650; scaffold1127 GLEAN promoter 134724 135723 0.618186 + . ID=CGI_10010651; scaffold1127 GLEAN mRNA 135724 136113 0.618186 + . ID=CGI_10010651; scaffold1127 TRF Tandem_Repeat 136786 136855 131 + . . scaffold1127 GLEAN mRNA 137130 140388 1 - . ID=CGI_10010652; scaffold1127 TRF Tandem_Repeat 139254 139287 68 + . . scaffold1127 TRF Tandem_Repeat 139267 139517 179 + . . scaffold1127 TRF Tandem_Repeat 139342 139517 187 + . . scaffold1127 GLEAN promoter 140389 141388 1 - . ID=CGI_10010652; scaffold1127 GLEAN mRNA 148451 167269 0.999897 - . ID=CGI_10010653; scaffold1127 TRF Tandem_Repeat 153732 153809 50 + . . scaffold1127 TRF Tandem_Repeat 153757 153829 78 + . . scaffold1127 TRF Tandem_Repeat 153759 153829 60 + . . scaffold1127 TRF Tandem_Repeat 153762 153820 63 + . . scaffold1127 TRF Tandem_Repeat 157708 157768 122 + . . scaffold1127 TRF Tandem_Repeat 159659 159714 112 + . . scaffold1127 TRF Tandem_Repeat 164485 164541 114 + . . scaffold1127 TRF Tandem_Repeat 166000 166147 67 + . . scaffold1127 TRF Tandem_Repeat 166005 166167 120 + . . scaffold1127 TRF Tandem_Repeat 166007 166147 91 + . . scaffold1127 TRF Tandem_Repeat 166082 166139 50 + . . scaffold1127 GLEAN promoter 167270 168269 0.999897 - . ID=CGI_10010653; scaffold1127 WUBlastX DNA_Kolobok-Hyd 167382 167735 47 - . . scaffold1127 GLEAN mRNA 169860 171541 1 - . ID=CGI_10010654; scaffold1127 TRF Tandem_Repeat 170262 170303 84 + . . scaffold1127 GLEAN promoter 171542 172541 1 - . ID=CGI_10010654; scaffold1127 TRF Tandem_Repeat 188722 189377 725 + . . scaffold1127 TRF Tandem_Repeat 189222 189250 58 + . . scaffold1127 TRF Tandem_Repeat 189552 189597 92 + . . scaffold1127 TRF Tandem_Repeat 190586 190621 72 + . . scaffold1127 TRF Tandem_Repeat 203051 203099 98 + . . scaffold1127 TRF Tandem_Repeat 203544 203602 118 + . . scaffold1127 GLEAN mRNA 208837 232661 0.592806 - . ID=CGI_10010655; scaffold1127 TRF Tandem_Repeat 225387 225424 76 + . . scaffold1127 TRF Tandem_Repeat 227502 227530 58 + . . scaffold1127 TRF Tandem_Repeat 228150 228272 237 + . . scaffold1127 TRF Tandem_Repeat 228154 228266 100 + . . scaffold1127 GLEAN promoter 232331 233330 0.999949 + . ID=CGI_10010656; scaffold1127 GLEAN promoter 232662 233661 0.592806 - . ID=CGI_10010655; scaffold1127 GLEAN mRNA 233331 246292 0.999949 + . ID=CGI_10010656; scaffold1127 TRF Tandem_Repeat 235422 235466 54 + . . scaffold1127 WUBlastX LTR_Copia 245839 245892 24 + . . scaffold1127 GLEAN mRNA 249685 268945 0.834068 - . ID=CGI_10010657; scaffold1127 WUBlastX LTR_Pao 262284 262478 48 - . . scaffold1127 GLEAN promoter 268946 269945 0.834068 - . ID=CGI_10010657; scaffold1128 TRF Tandem_Repeat 426 471 92 + . . scaffold1128 GLEAN mRNA 4586 5053 0.991142 - . ID=CGI_10003473; scaffold1128 GLEAN promoter 5054 6053 0.991142 - . ID=CGI_10003473; scaffold1128 GLEAN mRNA 5412 8209 0.725715 - . ID=CGI_10003474; scaffold1128 GLEAN promoter 7631 8630 0.85661 + . ID=CGI_10003475; scaffold1128 GLEAN promoter 8210 9209 0.725715 - . ID=CGI_10003474; scaffold1128 GLEAN mRNA 8631 23480 0.85661 + . ID=CGI_10003475; scaffold1128 TRF Tandem_Repeat 10283 10349 134 + . . scaffold1128 TRF Tandem_Repeat 23626 23720 163 + . . scaffold1128 WUBlastX LINE_RTE-BovB 26873 27118 41 - . . scaffold1128 WUBlastX LINE_RTE-BovB 27184 27336 38 - . . scaffold1128 GLEAN mRNA 28459 30180 0.999661 - . ID=CGI_10003476; scaffold1128 GLEAN promoter 30181 31180 0.999661 - . ID=CGI_10003476; scaffold1128 WUBlastX LTR_Ngaro 43139 43858 130 - . . scaffold1128 WUBlastX LTR_Ngaro 43139 44095 111 - . . scaffold1128 WUBlastX LTR_Ngaro 44029 45051 499 - . . scaffold1128 WUBlastX LTR_Ngaro 45053 45331 183 - . . scaffold1128 WUBlastX LTR_Ngaro 45336 45602 98 - . . scaffold1128 WUBlastX LTR_Ngaro 45360 45674 43 - . . scaffold1128 WUBlastX LTR_Ngaro 45859 46008 40 - . . scaffold1128 WUBlastX LTR_Ngaro 46004 46303 51 - . . scaffold1128 WUBlastX DNA_IS4EU 48109 48762 322 + . . scaffold1128 WUBlastX DNA_IS4EU 49257 49463 40 - . . scaffold1128 WUBlastX DNA_IS4EU 49322 49588 49 - . . scaffold1128 WUBlastX DNA_IS4EU 49523 49663 29 - . . scaffold1128 WUBlastX DNA_IS4EU 50983 51216 61 - . . scaffold1128 TRF Tandem_Repeat 51274 51332 73 + . . scaffold1128 TRF Tandem_Repeat 55986 56038 88 + . . scaffold1128 WUBlastX DNA_MuDR 71232 71969 35 - . . scaffold1128 WUBlastX DNA_MuDR 71238 71705 51 - . . scaffold1129 GLEAN promoter 11196 12195 0.996341 + . ID=CGI_10002108; scaffold1129 GLEAN mRNA 12196 13740 0.996341 + . ID=CGI_10002108; scaffold1129 GLEAN mRNA 16951 17595 0.999825 - . ID=CGI_10002109; scaffold1129 GLEAN promoter 17596 18595 0.999825 - . ID=CGI_10002109; scaffold113 TRF Tandem_Repeat 15772 15813 84 + . . scaffold113 WUBlastX DNA_Kolobok 22607 23281 38 + . . scaffold113 WUBlastX DNA_Kolobok 22835 23191 42 + . . scaffold113 WUBlastX LINE_L2 25060 25134 22 + . . scaffold113 WUBlastX LINE_L2 25130 25168 23 + . . scaffold113 WUBlastX LINE_L2 25130 25222 22 + . . scaffold113 WUBlastX LINE_L2 25497 25922 42 + . . scaffold113 WUBlastX LINE_L2 25539 25655 50 + . . scaffold113 TRF Tandem_Repeat 29384 29525 75 + . . scaffold113 TRF Tandem_Repeat 29385 29460 77 + . . scaffold113 TRF Tandem_Repeat 29760 29839 53 + . . scaffold113 TRF Tandem_Repeat 29769 29982 70 + . . scaffold113 TRF Tandem_Repeat 29785 29916 131 + . . scaffold113 TRF Tandem_Repeat 31006 31081 52 + . . scaffold113 TRF Tandem_Repeat 34069 34144 129 + . . scaffold113 TRF Tandem_Repeat 34616 34659 70 + . . scaffold113 TRF Tandem_Repeat 36744 37159 544 + . . scaffold113 TRF Tandem_Repeat 37156 37192 56 + . . scaffold113 GLEAN mRNA 41336 41665 0.776714 - . ID=CGI_10021281; scaffold113 GLEAN promoter 41666 42665 0.776714 - . ID=CGI_10021281; scaffold113 TRF Tandem_Repeat 41718 41813 192 + . . scaffold113 WUBlastX LINE_Penelope 42788 43015 106 - . . scaffold113 WUBlastX LINE_Penelope 42853 43305 118 - . . scaffold113 WUBlastX LINE_Penelope 43015 43305 170 - . . scaffold113 WUBlastX LINE_Penelope 43018 43356 96 - . . scaffold113 TRF Tandem_Repeat 44095 44159 130 + . . scaffold113 WUBlastX LINE_L2 48519 48668 33 + . . scaffold113 WUBlastX LINE_L2 48614 49102 128 + . . scaffold113 WUBlastX LINE_L1 48704 49105 211 + . . scaffold113 WUBlastX LINE_L1 49077 49142 25 + . . scaffold113 TRF Tandem_Repeat 49838 50709 1204 + . . scaffold113 GLEAN promoter 51825 52824 0.991235 + . ID=CGI_10021282; scaffold113 TRF Tandem_Repeat 52153 52194 59 + . . scaffold113 WUBlastX LINE_RTE-X 52248 52613 61 + . . scaffold113 WUBlastX LINE_CR1 52311 52739 23 + . . scaffold113 WUBlastX LINE_RTE-X 52311 52610 79 + . . scaffold113 GLEAN promoter 52720 53719 0.859957 + . ID=CGI_10021283; scaffold113 WUBlastX LINE_RTE-X 52732 52863 22 + . . scaffold113 GLEAN mRNA 52825 53091 0.991235 + . ID=CGI_10021282; scaffold113 GLEAN mRNA 53720 57757 0.859957 + . ID=CGI_10021283; scaffold113 TRF Tandem_Repeat 54251 54302 56 + . . scaffold113 WUBlastX LINE_RTE-X 54343 54660 41 + . . scaffold113 WUBlastX LINE_RTE-X 54355 54564 50 + . . scaffold113 WUBlastX LINE_RTE-X 54358 54531 68 + . . scaffold113 WUBlastX LINE_RTE-X 54662 54838 82 + . . scaffold113 GLEAN promoter 59726 60725 0.694311 + . ID=CGI_10021284; scaffold113 GLEAN mRNA 60726 60953 0.694311 + . ID=CGI_10021284; scaffold113 TRF Tandem_Repeat 63574 63606 66 + . . scaffold113 TRF Tandem_Repeat 67966 67992 54 + . . scaffold113 GLEAN mRNA 68161 68598 0.990729 - . ID=CGI_10021285; scaffold113 GLEAN promoter 68599 69598 0.990729 - . ID=CGI_10021285; scaffold113 TRF Tandem_Repeat 108236 108513 177 + . . scaffold113 TRF Tandem_Repeat 108608 108951 562 + . . scaffold113 GLEAN promoter 111752 112751 0.458528 + . ID=CGI_10021286; scaffold113 GLEAN mRNA 112752 117970 0.458528 + . ID=CGI_10021286; scaffold113 WUBlastX LINE_RTE-X 115214 115672 66 + . . scaffold113 WUBlastX LTR_Ngaro 116906 117685 20 + . . scaffold113 WUBlastX LTR_Ngaro 117182 117922 59 + . . scaffold113 WUBlastX LTR_Ngaro 117302 117922 73 + . . scaffold113 WUBlastX LTR_Ngaro 117945 119357 710 + . . scaffold113 WUBlastX LTR_Ngaro 118939 119508 111 + . . scaffold113 WUBlastX LTR_Ngaro 119502 119795 60 + . . scaffold113 WUBlastX LTR_Ngaro 119657 120019 73 + . . scaffold113 WUBlastX LTR_Ngaro 119819 120007 89 + . . scaffold113 WUBlastX LTR_Ngaro 120022 120408 189 + . . scaffold113 WUBlastX LTR_DIRS 146150 146497 116 + . . scaffold113 WUBlastX LTR_DIRS 146545 146820 62 + . . scaffold113 WUBlastX LTR_DIRS 146850 147083 50 + . . scaffold113 TRF Tandem_Repeat 153640 153694 110 + . . scaffold113 TRF Tandem_Repeat 162572 162635 128 + . . scaffold113 TRF Tandem_Repeat 165358 165430 146 + . . scaffold113 TRF Tandem_Repeat 166259 166364 63 + . . scaffold113 TRF Tandem_Repeat 166259 166364 53 + . . scaffold113 GLEAN promoter 166918 167917 0.777732 + . ID=CGI_10021288; scaffold113 GLEAN mRNA 166998 167240 1 - . ID=CGI_10021287; scaffold113 GLEAN promoter 167241 168240 1 - . ID=CGI_10021287; scaffold113 GLEAN mRNA 167918 175905 0.777732 + . ID=CGI_10021288; scaffold113 WUBlastX LINE_RTE-X 172993 173358 35 - . . scaffold113 WUBlastX LINE_RTE-X 173083 173190 51 - . . scaffold113 TRF Tandem_Repeat 174459 174616 183 + . . scaffold113 TRF Tandem_Repeat 174459 174616 171 + . . scaffold113 TRF Tandem_Repeat 175911 175984 141 + . . scaffold113 TRF Tandem_Repeat 184863 185067 191 + . . scaffold113 TRF Tandem_Repeat 184863 185095 179 + . . scaffold113 TRF Tandem_Repeat 194806 194882 127 + . . scaffold113 TRF Tandem_Repeat 195614 195674 122 + . . scaffold113 TRF Tandem_Repeat 195672 195702 62 + . . scaffold113 TRF Tandem_Repeat 195700 195742 50 + . . scaffold113 TRF Tandem_Repeat 199147 199214 118 + . . scaffold113 TRF Tandem_Repeat 203033 203072 80 + . . scaffold113 TRF Tandem_Repeat 203238 203289 88 + . . scaffold113 TRF Tandem_Repeat 203485 203666 202 + . . scaffold113 TRF Tandem_Repeat 203485 203666 202 + . . scaffold113 TRF Tandem_Repeat 203782 203832 84 + . . scaffold113 WUBlastX LTR_ERV1 204828 205010 36 - . . scaffold113 WUBlastX LTR_ERV1 204873 205109 44 - . . scaffold113 WUBlastX LTR_Copia 204876 205346 30 - . . scaffold113 WUBlastX LINE_Penelope 221659 222489 182 - . . scaffold113 WUBlastX LINE_Penelope 221668 222666 135 - . . scaffold113 TRF Tandem_Repeat 223262 223358 126 + . . scaffold113 TRF Tandem_Repeat 224870 224913 88 + . . scaffold113 TRF Tandem_Repeat 241007 241040 50 + . . scaffold113 GLEAN mRNA 246298 256285 1 - . ID=CGI_10021289; scaffold113 TRF Tandem_Repeat 247258 247302 90 + . . scaffold113 TRF Tandem_Repeat 250230 250334 93 + . . scaffold113 TRF Tandem_Repeat 250533 250642 78 + . . scaffold113 TRF Tandem_Repeat 250534 250642 107 + . . scaffold113 TRF Tandem_Repeat 251490 251549 120 + . . scaffold113 WUBlastX LINE_L1-Tx1 252586 253209 132 - . . scaffold113 WUBlastX LINE_L1-Tx1 253217 253645 48 - . . scaffold113 GLEAN promoter 256286 257285 1 - . ID=CGI_10021289; scaffold113 TRF Tandem_Repeat 256533 256569 74 + . . scaffold113 TRF Tandem_Repeat 257315 257379 76 + . . scaffold113 TRF Tandem_Repeat 258453 258481 51 + . . scaffold113 TRF Tandem_Repeat 261375 261422 96 + . . scaffold113 TRF Tandem_Repeat 262917 262981 123 + . . scaffold113 GLEAN promoter 264732 265731 0.870519 + . ID=CGI_10021290; scaffold113 GLEAN mRNA 265732 267150 0.870519 + . ID=CGI_10021290; scaffold113 GLEAN promoter 271140 272139 0.996743 + . ID=CGI_10021291; scaffold113 GLEAN mRNA 272140 310523 0.996743 + . ID=CGI_10021291; scaffold113 TRF Tandem_Repeat 281905 282003 51 + . . scaffold113 TRF Tandem_Repeat 281926 282008 89 + . . scaffold113 TRF Tandem_Repeat 283248 283294 94 + . . scaffold113 TRF Tandem_Repeat 285803 285936 72 + . . scaffold113 TRF Tandem_Repeat 285803 285908 83 + . . scaffold113 TRF Tandem_Repeat 285827 285908 65 + . . scaffold113 TRF Tandem_Repeat 287078 287183 83 + . . scaffold113 TRF Tandem_Repeat 287078 287211 72 + . . scaffold113 TRF Tandem_Repeat 287102 287183 65 + . . scaffold113 TRF Tandem_Repeat 306458 306514 96 + . . scaffold113 GLEAN mRNA 314793 358171 0.705361 - . ID=CGI_10021292; scaffold113 TRF Tandem_Repeat 322287 322366 142 + . . scaffold113 TRF Tandem_Repeat 339723 339827 110 + . . scaffold113 TRF Tandem_Repeat 339727 339826 119 + . . scaffold113 TRF Tandem_Repeat 342653 342714 124 + . . scaffold113 GLEAN promoter 357328 358327 0.617063 + . ID=CGI_10021293; scaffold113 GLEAN promoter 358172 359171 0.705361 - . ID=CGI_10021292; scaffold113 GLEAN mRNA 358328 358690 0.617063 + . ID=CGI_10021293; scaffold113 WUBlastX LINE_L2 370246 370464 76 - . . scaffold113 WUBlastX LINE_L2 370267 370539 53 - . . scaffold113 TRF Tandem_Repeat 371505 371549 81 + . . scaffold113 TRF Tandem_Repeat 376237 376270 68 + . . scaffold113 TRF Tandem_Repeat 380063 380853 1190 + . . scaffold113 TRF Tandem_Repeat 380877 380942 60 + . . scaffold113 TRF Tandem_Repeat 380884 380959 73 + . . scaffold113 WUBlastX LINE_L1 384259 384777 21 - . . scaffold113 WUBlastX LINE_L1-Tx1 384436 384690 25 - . . scaffold113 WUBlastX LINE_L1 388154 388357 108 - . . scaffold113 WUBlastX LINE_L1 388169 388531 36 - . . scaffold113 WUBlastX LINE_L1-Tx1 388190 388438 49 - . . scaffold113 TRF Tandem_Repeat 398779 400036 1420 + . . scaffold113 TRF Tandem_Repeat 410180 410219 62 + . . scaffold113 WUBlastX LINE_L1 419314 420165 40 + . . scaffold113 WUBlastX LINE_CR1-L2 419560 420150 204 + . . scaffold113 WUBlastX LINE_CR1-L2 420976 422163 395 + . . scaffold113 WUBlastX LINE_CR1-L2 422162 422974 463 + . . scaffold113 WUBlastX LINE_CR1-L2 422973 423155 129 + . . scaffold113 WUBlastX LINE_CR1 422973 423230 94 + . . scaffold113 WUBlastX LINE_CR1 422973 423188 95 + . . scaffold113 WUBlastX LINE_L2 422973 423401 29 + . . scaffold113 WUBlastX LINE_L2 422973 423302 71 + . . scaffold113 WUBlastX LINE_L2 423870 423980 21 + . . scaffold113 WUBlastX DNA_PiggyBac 447245 448867 912 - . . scaffold113 TRF Tandem_Repeat 451070 451885 1319 + . . scaffold113 WUBlastX LINE_RTE-X 477226 477372 47 - . . scaffold113 WUBlastX LINE_RTE-X 477708 478199 56 - . . scaffold113 TRF Tandem_Repeat 527999 528043 90 + . . scaffold113 WUBlastX LINE_L1-Tx1 532634 532936 31 - . . scaffold113 TRF Tandem_Repeat 535305 535344 62 + . . scaffold113 WUBlastX LTR_Gypsy 539927 540598 210 + . . scaffold113 WUBlastX LTR_Gypsy 540029 540565 405 + . . scaffold113 WUBlastX LTR_Gypsy 540044 540706 257 + . . scaffold113 WUBlastX LTR_Gypsy 540663 541175 24 + . . scaffold113 WUBlastX LTR_Gypsy-Cigr 540810 541400 114 + . . scaffold113 WUBlastX LTR_Gypsy 540813 541175 162 + . . scaffold113 WUBlastX LTR_Gypsy-Cigr 540852 541313 147 + . . scaffold113 TRF Tandem_Repeat 541851 541926 98 + . . scaffold113 WUBlastX LINE_Penelope 545450 546202 52 - . . scaffold113 WUBlastX LINE_Penelope 545591 546175 102 - . . scaffold113 WUBlastX LINE_Penelope 545756 546202 116 - . . scaffold113 TRF Tandem_Repeat 546232 547029 1184 + . . scaffold113 WUBlastX LINE_Penelope 547070 547243 60 - . . scaffold113 WUBlastX LINE_Penelope 547109 547225 62 - . . scaffold113 WUBlastX LINE_Penelope 547112 547294 22 - . . scaffold113 WUBlastX LINE_Penelope 547284 547325 26 - . . scaffold113 TRF Tandem_Repeat 557333 558011 866 + . . scaffold113 TRF Tandem_Repeat 558242 558306 121 + . . scaffold113 TRF Tandem_Repeat 560072 560121 75 + . . scaffold113 WUBlastX DNA_IS4EU 561522 561800 29 + . . scaffold113 WUBlastX DNA_Kolobok-IS4 562477 563040 123 - . . scaffold113 WUBlastX DNA_Harbinger 570909 570950 26 - . . scaffold113 WUBlastX DNA_Helitron 572790 572885 34 - . . scaffold113 WUBlastX RC_Helitron 573203 573913 208 - . . scaffold113 TRF Tandem_Repeat 573988 574120 87 + . . scaffold113 GLEAN mRNA 582017 590807 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_MuDR 582119 582379 29 - . . scaffold113 WUBlastX DNA_MuDR 582164 582379 30 - . . scaffold113 WUBlastX DNA_MuDR 588527 588730 53 - . . scaffold113 WUBlastX DNA_MuDR 588750 588962 99 - . . scaffold113 WUBlastX DNA_MuDR 589474 589635 24 - . . scaffold113 WUBlastX DNA_MuDR 589504 589641 56 - . . scaffold113 WUBlastX DNA_MuDR 589623 590009 104 - . . scaffold113 WUBlastX DNA_MuDR 589683 590009 136 - . . scaffold113 WUBlastX DNA_MuDR 590020 590142 20 - . . scaffold113 WUBlastX DNA_hAT-Tag1 590382 590951 70 - . . scaffold113 WUBlastX DNA_hAT-Ac 590403 590738 72 - . . scaffold113 WUBlastX DNA_hAT-Hobo 590418 590549 75 - . . scaffold113 WUBlastX DNA_hAT-Ac 590418 590606 73 - . . scaffold113 GLEAN promoter 590808 591807 0.980826 - . ID=CGI_10021294; scaffold113 WUBlastX DNA_hAT-Tag1 591155 591499 79 + . . scaffold113 WUBlastX DNA_hAT-Tag1 591590 591760 49 - . . scaffold113 WUBlastX LINE_RTE-X 592759 593280 80 - . . scaffold113 WUBlastX LINE_RTE-X 592777 593199 123 - . . scaffold113 WUBlastX LINE_RTE-X 593183 593461 27 - . . scaffold113 TRF Tandem_Repeat 593969 594003 61 + . . scaffold113 GLEAN mRNA 597272 600471 1 - . ID=CGI_10021295; scaffold113 TRF Tandem_Repeat 599532 599636 131 + . . scaffold113 TRF Tandem_Repeat 599545 599637 170 + . . scaffold113 TRF Tandem_Repeat 600188 600245 109 + . . scaffold113 GLEAN promoter 600472 601471 1 - . ID=CGI_10021295; scaffold113 WUBlastX DNA_TcMar-Tc2 603470 603703 31 + . . scaffold113 WUBlastX DNA_TcMar-Fot1 603544 604065 64 + . . scaffold113 WUBlastX DNA_TcMar-Tc2 603721 604074 83 + . . scaffold113 WUBlastX DNA_TcMar-Tc2 603820 604065 91 + . . scaffold113 GLEAN promoter 605997 606996 0.993237 + . ID=CGI_10021296; scaffold113 GLEAN mRNA 606997 609864 0.993237 + . ID=CGI_10021296; scaffold113 TRF Tandem_Repeat 608833 608864 55 + . . scaffold113 GLEAN mRNA 609492 622798 0.993341 - . ID=CGI_10021297; scaffold113 WUBlastX LINE_L1-Tx1 612491 616147 1090 - . . scaffold113 WUBlastX LINE_L2-Hydra 616232 616393 23 - . . scaffold113 WUBlastX LINE_CR1 616962 617630 248 - . . scaffold113 GLEAN promoter 622799 623798 0.993341 - . ID=CGI_10021297; scaffold113 GLEAN mRNA 624420 625184 0.977498 - . ID=CGI_10021298; scaffold113 GLEAN promoter 625185 626184 0.977498 - . ID=CGI_10021298; scaffold113 GLEAN mRNA 627980 631382 1 - . ID=CGI_10021299; scaffold113 TRF Tandem_Repeat 629940 629975 72 + . . scaffold113 GLEAN promoter 631383 632382 1 - . ID=CGI_10021299; scaffold113 TRF Tandem_Repeat 634507 634536 51 + . . scaffold113 GLEAN promoter 634592 635591 0.739248 + . ID=CGI_10021300; scaffold113 TRF Tandem_Repeat 635065 635115 102 + . . scaffold113 GLEAN mRNA 635592 660192 0.739248 + . ID=CGI_10021300; scaffold113 TRF Tandem_Repeat 653033 653093 122 + . . scaffold113 TRF Tandem_Repeat 668364 668412 98 + . . scaffold113 GLEAN mRNA 668908 677172 1 - . ID=CGI_10021301; scaffold113 GLEAN promoter 677173 678172 1 - . ID=CGI_10021301; scaffold113 WUBlastX LINE_Penelope 680050 680220 33 - . . scaffold1131 GLEAN mRNA 1170 16217 0.714186 - . ID=CGI_10013494; scaffold1131 GLEAN promoter 16218 17217 0.714186 - . ID=CGI_10013494; scaffold1131 WUBlastX LINE_RTE-X 17101 17718 162 - . . scaffold1131 WUBlastX LINE_RTE-X 17227 17718 187 - . . scaffold1131 TRF Tandem_Repeat 17828 17908 119 + . . scaffold1131 TRF Tandem_Repeat 27881 27971 76 + . . scaffold1131 TRF Tandem_Repeat 27881 27971 74 + . . scaffold1131 GLEAN promoter 39304 40303 0.837422 + . ID=CGI_10013495; scaffold1131 GLEAN mRNA 40304 42440 0.837422 + . ID=CGI_10013495; scaffold1131 TRF Tandem_Repeat 41565 41622 116 + . . scaffold1131 GLEAN promoter 46962 47961 0.442571 + . ID=CGI_10013496; scaffold1131 GLEAN mRNA 47962 54019 0.442571 + . ID=CGI_10013496; scaffold1131 GLEAN mRNA 48134 51688 1 - . ID=CGI_10013497; scaffold1131 GLEAN promoter 51689 52688 1 - . ID=CGI_10013497; scaffold1131 GLEAN promoter 57720 58719 0.999558 + . ID=CGI_10013498; scaffold1131 TRF Tandem_Repeat 57762 57818 114 + . . scaffold1131 GLEAN mRNA 58720 60389 0.999558 + . ID=CGI_10013498; scaffold1131 TRF Tandem_Repeat 60147 60179 57 + . . scaffold1131 GLEAN mRNA 61217 70276 0.873691 - . ID=CGI_10013499; scaffold1131 TRF Tandem_Repeat 65664 65718 74 + . . scaffold1131 GLEAN promoter 70277 71276 0.873691 - . ID=CGI_10013499; scaffold1131 GLEAN promoter 74312 75311 0.995725 + . ID=CGI_10013500; scaffold1131 GLEAN mRNA 75312 79227 0.995725 + . ID=CGI_10013500; scaffold1131 TRF Tandem_Repeat 80236 80310 57 + . . scaffold1131 GLEAN promoter 84844 85843 0.990667 + . ID=CGI_10013501; scaffold1131 GLEAN mRNA 85844 87635 0.990667 + . ID=CGI_10013501; scaffold1131 GLEAN mRNA 95341 114163 0.451365 - . ID=CGI_10013502; scaffold1131 GLEAN promoter 114164 115163 0.451365 - . ID=CGI_10013502; scaffold1131 WUBlastX DNA_Harbinger 118368 118592 42 + . . scaffold1131 WUBlastX DNA_Harbinger 118389 118568 76 + . . scaffold1131 WUBlastX DNA_Harbinger 119447 119752 75 + . . scaffold1131 WUBlastX DNA_Harbinger 119552 119755 123 + . . scaffold1131 WUBlastX DNA_Harbinger 119945 120292 82 + . . scaffold1131 WUBlastX DNA_Harbinger 120032 120337 168 + . . scaffold1131 WUBlastX DNA_Harbinger 120038 120292 183 + . . scaffold1131 WUBlastX DNA_Harbinger 120720 120833 27 + . . scaffold1131 WUBlastX DNA_Harbinger 122225 122362 46 - . . scaffold1131 WUBlastX DNA_Harbinger 122246 122386 57 - . . scaffold1131 WUBlastX DNA_Harbinger 122641 122787 62 - . . scaffold1131 TRF Tandem_Repeat 122915 122942 56 + . . scaffold1131 TRF Tandem_Repeat 123148 123203 94 + . . scaffold1131 WUBlastX LINE_L1-Tx1 155573 155737 39 + . . scaffold1131 WUBlastX LINE_L1-Tx1 155633 155758 73 + . . scaffold1131 WUBlastX LINE_L1-Tx1 155698 155973 58 + . . scaffold1131 WUBlastX LINE_L1 155770 156012 34 + . . scaffold1131 WUBlastX LINE_L1 155854 155973 69 + . . scaffold1131 WUBlastX LINE_L1 156623 156763 21 + . . scaffold1131 WUBlastX LINE_L1-Tx1 156697 156753 22 + . . scaffold1131 WUBlastX LINE_L1 156715 156816 34 + . . scaffold1131 WUBlastX LINE_L1 156783 157097 118 + . . scaffold1131 WUBlastX LINE_L1-Tx1 156837 157097 189 + . . scaffold1131 WUBlastX LINE_L1 157097 157525 93 + . . scaffold1131 WUBlastX LINE_L1-Tx1 157178 157564 173 + . . scaffold1131 WUBlastX LINE_L1-Tx1 157199 157525 200 + . . scaffold1131 WUBlastX LINE_L1 157208 157690 92 + . . scaffold1131 WUBlastX LINE_L1-Tx1 157672 157944 144 + . . scaffold1131 WUBlastX LINE_R2-Hero 159629 159859 119 - . . scaffold1131 TRF Tandem_Repeat 165630 165697 93 + . . scaffold1131 TRF Tandem_Repeat 166375 166504 70 + . . scaffold1131 TRF Tandem_Repeat 182203 182227 50 + . . scaffold1131 GLEAN mRNA 185059 196456 0.813424 - . ID=CGI_10013503; scaffold1131 TRF Tandem_Repeat 187685 187762 156 + . . scaffold1131 GLEAN promoter 196457 197456 0.813424 - . ID=CGI_10013503; scaffold1131 TRF Tandem_Repeat 197611 198496 582 + . . scaffold1131 TRF Tandem_Repeat 197644 197811 167 + . . scaffold1131 TRF Tandem_Repeat 197644 198271 220 + . . scaffold1131 TRF Tandem_Repeat 197644 198024 236 + . . scaffold1131 TRF Tandem_Repeat 197850 198024 190 + . . scaffold1131 TRF Tandem_Repeat 198034 198271 143 + . . scaffold1131 GLEAN mRNA 206033 207431 0.648458 - . ID=CGI_10013504; scaffold1131 TRF Tandem_Repeat 206344 206522 225 + . . scaffold1131 GLEAN promoter 207432 208431 0.648458 - . ID=CGI_10013504; scaffold1131 WUBlastX LTR_Gypsy? 214754 215482 22 + . . scaffold1131 TRF Tandem_Repeat 218266 218297 55 + . . scaffold1131 TRF Tandem_Repeat 218437 219155 889 + . . scaffold1131 WUBlastX LTR_Gypsy 223736 224317 27 + . . scaffold1131 WUBlastX LTR_Gypsy 223889 224395 52 + . . scaffold1131 TRF Tandem_Repeat 230990 232255 1628 + . . scaffold1131 TRF Tandem_Repeat 230991 232104 1625 + . . scaffold1131 TRF Tandem_Repeat 231062 232251 288 + . . scaffold1131 WUBlastX LINE_L1-Tx1 236277 237113 150 - . . scaffold1131 WUBlastX LINE_L1-Tx1 236445 237119 155 - . . scaffold1131 WUBlastX LINE_L1-Tx1 237137 237625 163 - . . scaffold1131 WUBlastX LINE_L1-Tx1 237588 237839 95 - . . scaffold1131 WUBlastX LINE_L1-Tx1 237844 238329 231 - . . scaffold1131 GLEAN mRNA 246503 250952 0.387708 - . ID=CGI_10013505; scaffold1131 WUBlastX LINE_R2 248210 248434 89 - . . scaffold1131 GLEAN promoter 250953 251952 0.387708 - . ID=CGI_10013505; scaffold1131 WUBlastX LINE_L2 268180 268338 20 - . . scaffold1131 WUBlastX LINE_L2 268542 269060 54 - . . scaffold1131 WUBlastX LINE_CR1-L2 268581 268922 71 - . . scaffold1131 TRF Tandem_Repeat 271573 271601 58 + . . scaffold1131 TRF Tandem_Repeat 278864 278901 51 + . . scaffold1131 TRF Tandem_Repeat 285372 285418 62 + . . scaffold1131 TRF Tandem_Repeat 286928 286996 97 + . . scaffold1131 TRF Tandem_Repeat 286930 286995 109 + . . scaffold1131 TRF Tandem_Repeat 287876 287913 76 + . . scaffold1131 TRF Tandem_Repeat 292758 292802 90 + . . scaffold1131 TRF Tandem_Repeat 298423 298485 56 + . . scaffold1131 GLEAN promoter 302691 303690 1 + . ID=CGI_10013506; scaffold1131 GLEAN mRNA 303691 304307 1 + . ID=CGI_10013506; scaffold1131 WUBlastX DNA_Kolobok 304143 304292 81 + . . scaffold1131 WUBlastX DNA_Kolobok 304320 304391 23 - . . scaffold1131 WUBlastX DNA_Kolobok 304648 304818 89 - . . scaffold1131 WUBlastX DNA_Kolobok 304903 305307 79 - . . scaffold1131 WUBlastX DNA_Kolobok 305256 305432 80 - . . scaffold1131 WUBlastX DNA_Kolobok 305502 305702 131 - . . scaffold1131 WUBlastX DNA_Kolobok 305816 306628 172 - . . scaffold1131 TRF Tandem_Repeat 318784 318821 58 + . . scaffold1131 GLEAN promoter 319430 320429 0.261513 + . ID=CGI_10013507; scaffold1131 GLEAN mRNA 320430 326439 0.261513 + . ID=CGI_10013507; scaffold1131 TRF Tandem_Repeat 325975 326026 86 + . . scaffold1131 TRF Tandem_Repeat 339284 339386 143 + . . scaffold1131 TRF Tandem_Repeat 339508 339549 84 + . . scaffold1131 WUBlastX LINE_L1-Tx1 342116 342469 24 - . . scaffold1131 WUBlastX LINE_L1-Tx1 349148 349249 21 + . . scaffold1131 WUBlastX LINE_L1 349175 349255 26 + . . scaffold1131 WUBlastX LINE_L1 349190 349255 42 + . . scaffold1131 WUBlastX LINE_L1-Tx1 349260 349571 103 + . . scaffold1131 WUBlastX LINE_L1-Tx1 349577 350071 55 + . . scaffold1131 WUBlastX LINE_L1-Tx1 350158 350592 41 + . . scaffold1131 WUBlastX LINE_L1 350158 350361 50 + . . scaffold1131 WUBlastX LINE_L1-Tx1 350161 350508 49 + . . scaffold1131 WUBlastX LINE_L1 350233 350379 55 + . . scaffold1131 TRF Tandem_Repeat 353461 353503 86 + . . scaffold1132 TRF Tandem_Repeat 6427 6606 315 + . . scaffold1132 WUBlastX LINE_RTE-X 10176 10910 180 - . . scaffold1132 TRF Tandem_Repeat 11477 11512 72 + . . scaffold1132 TRF Tandem_Repeat 14041 14140 158 + . . scaffold1132 TRF Tandem_Repeat 14047 14140 108 + . . scaffold1132 TRF Tandem_Repeat 14053 14156 109 + . . scaffold1132 TRF Tandem_Repeat 18500 18580 81 + . . scaffold1132 TRF Tandem_Repeat 18511 18575 94 + . . scaffold1132 TRF Tandem_Repeat 19075 19108 68 + . . scaffold1132 TRF Tandem_Repeat 19106 19138 66 + . . scaffold1132 TRF Tandem_Repeat 19326 19372 94 + . . scaffold1132 TRF Tandem_Repeat 21761 21827 80 + . . scaffold1132 TRF Tandem_Repeat 24042 24105 128 + . . scaffold1132 TRF Tandem_Repeat 24696 24734 51 + . . scaffold1132 TRF Tandem_Repeat 25589 25622 68 + . . scaffold1132 TRF Tandem_Repeat 28958 29418 850 + . . scaffold1132 GLEAN mRNA 31636 33409 0.921324 - . ID=CGI_10023310; scaffold1132 GLEAN promoter 33410 34409 0.921324 - . ID=CGI_10023310; scaffold1132 TRF Tandem_Repeat 35611 35839 158 + . . scaffold1132 GLEAN mRNA 47693 94911 0.303068 - . ID=CGI_10023311; scaffold1132 TRF Tandem_Repeat 51997 52034 60 + . . scaffold1132 TRF Tandem_Repeat 59101 59141 82 + . . scaffold1132 TRF Tandem_Repeat 61958 62000 86 + . . scaffold1132 TRF Tandem_Repeat 63943 63987 90 + . . scaffold1132 TRF Tandem_Repeat 66816 67064 172 + . . scaffold1132 TRF Tandem_Repeat 66816 67064 172 + . . scaffold1132 TRF Tandem_Repeat 66816 67064 172 + . . scaffold1132 TRF Tandem_Repeat 66816 67107 172 + . . scaffold1132 TRF Tandem_Repeat 66816 67107 159 + . . scaffold1132 TRF Tandem_Repeat 66976 67074 70 + . . scaffold1132 TRF Tandem_Repeat 67572 67616 90 + . . scaffold1132 WUBlastX LINE_RTE-X 67917 68372 21 - . . scaffold1132 WUBlastX LINE_RTE-X 67941 68195 28 - . . scaffold1132 WUBlastX LINE_RTE-X 67986 68279 50 - . . scaffold1132 WUBlastX LINE_L1 79394 79897 143 + . . scaffold1132 WUBlastX LINE_L1-Tx1 79529 80005 205 + . . scaffold1132 TRF Tandem_Repeat 80930 80956 54 + . . scaffold1132 GLEAN promoter 94912 95911 0.303068 - . ID=CGI_10023311; scaffold1132 GLEAN mRNA 105539 106657 0.995556 - . ID=CGI_10023312; scaffold1132 WUBlastX LINE_R2 105785 106069 30 - . . scaffold1132 WUBlastX DNA_MuDR 106346 106558 43 - . . scaffold1132 GLEAN promoter 106658 107657 0.995556 - . ID=CGI_10023312; scaffold1132 GLEAN mRNA 111734 126977 0.898809 - . ID=CGI_10023313; scaffold1132 TRF Tandem_Repeat 120781 120847 66 + . . scaffold1132 TRF Tandem_Repeat 120781 120842 61 + . . scaffold1132 TRF Tandem_Repeat 120798 120847 82 + . . scaffold1132 TRF Tandem_Repeat 125523 125566 88 + . . scaffold1132 GLEAN promoter 126978 127977 0.898809 - . ID=CGI_10023313; scaffold1132 TRF Tandem_Repeat 135057 135093 74 + . . scaffold1132 WUBlastX LTR_Ngaro 167660 167857 49 - . . scaffold1132 TRF Tandem_Repeat 180517 180578 81 + . . scaffold1132 TRF Tandem_Repeat 183062 183097 72 + . . scaffold1132 TRF Tandem_Repeat 183470 183520 68 + . . scaffold1132 TRF Tandem_Repeat 194289 194322 59 + . . scaffold1132 TRF Tandem_Repeat 205226 205257 55 + . . scaffold1132 GLEAN mRNA 207782 231438 0.973884 - . ID=CGI_10023314; scaffold1132 TRF Tandem_Repeat 208489 208536 96 + . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210084 210320 25 + . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210138 210326 27 + . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210320 210826 74 + . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210455 210826 92 + . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210524 210898 78 + . . scaffold1132 WUBlastX DNA_TcMar-Tc1 210572 210829 99 + . . scaffold1132 TRF Tandem_Repeat 220229 220276 87 + . . scaffold1132 GLEAN promoter 231439 232438 0.973884 - . ID=CGI_10023314; scaffold1132 TRF Tandem_Repeat 250129 250221 133 + . . scaffold1132 TRF Tandem_Repeat 250130 250219 76 + . . scaffold1132 TRF Tandem_Repeat 250137 250203 89 + . . scaffold1132 TRF Tandem_Repeat 257656 257696 82 + . . scaffold1132 TRF Tandem_Repeat 269208 269244 74 + . . scaffold1132 TRF Tandem_Repeat 272907 272986 99 + . . scaffold1132 TRF Tandem_Repeat 272907 272986 99 + . . scaffold1132 TRF Tandem_Repeat 272911 272986 77 + . . scaffold1132 TRF Tandem_Repeat 273285 273334 100 + . . scaffold1132 TRF Tandem_Repeat 285259 285330 117 + . . scaffold1132 TRF Tandem_Repeat 289946 290003 98 + . . scaffold1132 TRF Tandem_Repeat 289954 290006 52 + . . scaffold1132 TRF Tandem_Repeat 290168 291511 1633 + . . scaffold1132 TRF Tandem_Repeat 297954 297983 51 + . . scaffold1132 TRF Tandem_Repeat 300170 300203 50 + . . scaffold1132 TRF Tandem_Repeat 300890 300927 76 + . . scaffold1132 TRF Tandem_Repeat 308665 308897 184 + . . scaffold1132 TRF Tandem_Repeat 308706 308919 89 + . . scaffold1132 TRF Tandem_Repeat 312904 312958 101 + . . scaffold1132 WUBlastX LINE_RTE-X 315937 316275 79 - . . scaffold1132 WUBlastX LINE_RTE-X 316048 316347 28 - . . scaffold1132 WUBlastX LINE_Rex-Babar 316550 316603 20 - . . scaffold1132 WUBlastX LINE_L2 317298 317348 27 - . . scaffold1132 WUBlastX LINE_RTE-X 317356 317550 59 - . . scaffold1132 WUBlastX LINE_RTE-X 317401 318486 147 - . . scaffold1132 WUBlastX LINE_RTE-X 318049 318870 241 - . . scaffold1132 WUBlastX LINE_L2 318866 318913 22 - . . scaffold1132 WUBlastX LINE_CR1 319031 319234 21 - . . scaffold1132 WUBlastX LINE_L1 319376 319507 28 - . . scaffold1132 GLEAN mRNA 323455 353252 0.805086 - . ID=CGI_10023315; scaffold1132 TRF Tandem_Repeat 326313 326629 273 + . . scaffold1132 WUBlastX LINE_CR1 333766 333813 20 + . . scaffold1132 WUBlastX LINE_RTE-X 334511 336553 850 + . . scaffold1132 GLEAN promoter 353253 354252 0.805086 - . ID=CGI_10023315; scaffold1132 GLEAN mRNA 363605 363823 0.999802 - . ID=CGI_10023316; scaffold1132 GLEAN promoter 363824 364823 0.999802 - . ID=CGI_10023316; scaffold1132 WUBlastX LTR_Gypsy 364626 365684 134 - . . scaffold1132 WUBlastX LTR_Gypsy 364812 365759 632 - . . scaffold1132 WUBlastX LTR_Gypsy 365686 365988 358 - . . scaffold1132 WUBlastX LTR_Gypsy 365719 366159 67 - . . scaffold1132 WUBlastX LTR_Gypsy 366594 368159 1428 - . . scaffold1132 WUBlastX LTR_Gypsy 370052 370867 376 - . . scaffold1132 WUBlastX LTR_Gypsy 370094 371023 58 - . . scaffold1132 WUBlastX LTR_Gypsy 370265 370867 388 - . . scaffold1132 GLEAN promoter 396324 397323 0.671769 + . ID=CGI_10023317; scaffold1132 GLEAN mRNA 397324 411857 0.671769 + . ID=CGI_10023317; scaffold1132 TRF Tandem_Repeat 411007 411245 412 + . . scaffold1132 TRF Tandem_Repeat 411020 411250 57 + . . scaffold1132 GLEAN mRNA 413110 426704 0.743295 - . ID=CGI_10023318; scaffold1132 TRF Tandem_Repeat 416336 416386 102 + . . scaffold1132 WUBlastX LINE_L1-Tx1 421271 421528 82 + . . scaffold1132 WUBlastX LINE_L2 421289 421456 83 + . . scaffold1132 WUBlastX LINE_RTE-X 421649 421987 61 + . . scaffold1132 WUBlastX LINE_RTE-X 421706 422011 90 + . . scaffold1132 WUBlastX LINE_RTE-X 422007 423194 134 + . . scaffold1132 WUBlastX LINE_RTE-X 423175 423465 194 + . . scaffold1132 WUBlastX LINE_CR1 423205 423516 136 + . . scaffold1132 WUBlastX LINE_L1-Tx1 423805 423987 27 + . . scaffold1132 WUBlastX LINE_R1 424141 424203 26 + . . scaffold1132 WUBlastX LINE_R2 424299 424394 25 + . . scaffold1132 WUBlastX LINE_I 424518 424811 23 + . . scaffold1132 WUBlastX LINE_RTE-X 424662 424796 63 + . . scaffold1132 WUBlastX LINE_RTE-X 424793 424888 60 + . . scaffold1132 WUBlastX LINE_RTE-X 424897 426141 601 + . . scaffold1132 GLEAN promoter 426705 427704 0.743295 - . ID=CGI_10023318; scaffold1132 GLEAN mRNA 427522 433314 0.976155 - . ID=CGI_10023319; scaffold1132 GLEAN promoter 433315 434314 0.976155 - . ID=CGI_10023319; scaffold1132 TRF Tandem_Repeat 441153 441441 343 + . . scaffold1132 TRF Tandem_Repeat 441153 441441 349 + . . scaffold1132 TRF Tandem_Repeat 444946 445505 612 + . . scaffold1132 TRF Tandem_Repeat 444946 445505 760 + . . scaffold1132 TRF Tandem_Repeat 445503 445841 393 + . . scaffold1132 TRF Tandem_Repeat 446210 446247 76 + . . scaffold1132 TRF Tandem_Repeat 447567 447620 108 + . . scaffold1132 GLEAN promoter 448140 449139 0.24625 + . ID=CGI_10023320; scaffold1132 TRF Tandem_Repeat 448690 448787 81 + . . scaffold1132 GLEAN mRNA 449140 469230 0.24625 + . ID=CGI_10023320; scaffold1132 GLEAN promoter 469810 470809 1 + . ID=CGI_10023321; scaffold1132 TRF Tandem_Repeat 470465 470515 102 + . . scaffold1132 GLEAN mRNA 470810 475557 1 + . ID=CGI_10023321; scaffold1132 TRF Tandem_Repeat 472772 473059 558 + . . scaffold1132 TRF Tandem_Repeat 479048 479829 872 + . . scaffold1132 TRF Tandem_Repeat 479999 480051 88 + . . scaffold1132 GLEAN mRNA 481038 499798 0.881647 - . ID=CGI_10023322; scaffold1132 TRF Tandem_Repeat 486503 486577 150 + . . scaffold1132 TRF Tandem_Repeat 491903 492123 370 + . . scaffold1132 TRF Tandem_Repeat 494227 494327 73 + . . scaffold1132 TRF Tandem_Repeat 498501 498848 561 + . . scaffold1132 GLEAN promoter 499799 500798 0.881647 - . ID=CGI_10023322; scaffold1132 TRF Tandem_Repeat 500080 500121 84 + . . scaffold1132 TRF Tandem_Repeat 500741 500793 106 + . . scaffold1132 TRF Tandem_Repeat 511282 511318 74 + . . scaffold1132 TRF Tandem_Repeat 514338 514377 80 + . . scaffold1132 TRF Tandem_Repeat 516598 516636 69 + . . scaffold1132 TRF Tandem_Repeat 518046 518809 806 + . . scaffold1132 TRF Tandem_Repeat 518046 518808 754 + . . scaffold1132 GLEAN mRNA 525779 536930 0.997312 - . ID=CGI_10023323; scaffold1132 TRF Tandem_Repeat 535116 535146 62 + . . scaffold1132 GLEAN promoter 536931 537930 0.997312 - . ID=CGI_10023323; scaffold1132 GLEAN promoter 547431 548430 0.760962 + . ID=CGI_10023324; scaffold1132 GLEAN mRNA 548431 556148 0.760962 + . ID=CGI_10023324; scaffold1132 WUBlastX DNA_TcMar-Marin 553362 553628 65 - . . scaffold1132 TRF Tandem_Repeat 563152 563189 60 + . . scaffold1132 TRF Tandem_Repeat 581701 581725 50 + . . scaffold1132 TRF Tandem_Repeat 590620 590681 55 + . . scaffold1132 GLEAN mRNA 597236 637139 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 602135 602171 74 + . . scaffold1132 TRF Tandem_Repeat 604488 604942 757 + . . scaffold1132 TRF Tandem_Repeat 604947 605206 337 + . . scaffold1132 TRF Tandem_Repeat 617148 617224 120 + . . scaffold1132 TRF Tandem_Repeat 620874 620911 76 + . . scaffold1132 TRF Tandem_Repeat 627651 627761 132 + . . scaffold1132 TRF Tandem_Repeat 629690 629737 96 + . . scaffold1132 TRF Tandem_Repeat 632670 632722 106 + . . scaffold1132 TRF Tandem_Repeat 633337 633386 100 + . . scaffold1132 TRF Tandem_Repeat 634747 634794 96 + . . scaffold1132 TRF Tandem_Repeat 634792 634857 73 + . . scaffold1132 GLEAN promoter 637140 638139 1 - . ID=CGI_10023325; scaffold1132 TRF Tandem_Repeat 651898 651957 120 + . . scaffold1132 TRF Tandem_Repeat 656580 660307 5062 + . . scaffold1132 TRF Tandem_Repeat 662473 663246 855 + . . scaffold1132 TRF Tandem_Repeat 663583 663616 50 + . . scaffold1132 GLEAN mRNA 663757 669756 0.999393 - . ID=CGI_10023326; scaffold1132 TRF Tandem_Repeat 668991 669028 51 + . . scaffold1132 GLEAN promoter 669757 670756 0.999393 - . ID=CGI_10023326; scaffold1132 TRF Tandem_Repeat 669890 669942 106 + . . scaffold1132 WUBlastX LINE_Penelope 671035 673053 1074 + . . scaffold1132 WUBlastX LINE_Penelope 672903 673085 36 + . . scaffold1132 GLEAN mRNA 679306 684763 1 - . ID=CGI_10023327; scaffold1132 GLEAN promoter 684764 685763 1 - . ID=CGI_10023327; scaffold1132 TRF Tandem_Repeat 685027 685271 271 + . . scaffold1132 GLEAN mRNA 685309 695827 1 - . ID=CGI_10023328; scaffold1132 GLEAN promoter 695828 696827 1 - . ID=CGI_10023328; scaffold1132 GLEAN mRNA 696938 703386 0.873691 - . ID=CGI_10023329; scaffold1132 GLEAN promoter 703387 704386 0.873691 - . ID=CGI_10023329; scaffold1132 TRF Tandem_Repeat 706004 707462 1854 + . . scaffold1132 WUBlastX LTR_Gypsy 709356 709613 76 + . . scaffold1132 WUBlastX LTR_Gypsy 709407 710351 173 + . . scaffold1132 GLEAN mRNA 715893 721077 0.813716 - . ID=CGI_10023330; scaffold1132 WUBlastX LTR_Gypsy 718758 719192 45 - . . scaffold1132 WUBlastX LTR_Gypsy 718758 719291 28 - . . scaffold1132 WUBlastX LTR_Gypsy 718827 719204 95 - . . scaffold1132 WUBlastX LTR_Gypsy 719472 719555 20 - . . scaffold1132 WUBlastX LTR_Gypsy 720247 720516 81 - . . scaffold1132 GLEAN promoter 721078 722077 0.813716 - . ID=CGI_10023330; scaffold1132 GLEAN mRNA 722202 726528 0.998941 - . ID=CGI_10023331; scaffold1132 GLEAN promoter 726529 727528 0.998941 - . ID=CGI_10023331; scaffold1132 TRF Tandem_Repeat 731476 731598 212 + . . scaffold1132 WUBlastX LINE_L1 733588 734076 35 + . . scaffold1132 WUBlastX LINE_CR1-L2 733675 734244 51 + . . scaffold1132 WUBlastX LINE_L2 733780 734247 111 + . . scaffold1132 WUBlastX LINE_L1 735520 736017 71 + . . scaffold1132 WUBlastX LINE_L1-Tx1 735712 736017 71 + . . scaffold1132 WUBlastX LINE_L1 735796 736011 81 + . . scaffold1132 WUBlastX LINE_L1 736137 736328 42 + . . scaffold1132 WUBlastX LINE_L1-Tx1 736331 736513 130 + . . scaffold1132 WUBlastX LINE_L1-Tx1 736340 736558 72 + . . scaffold1132 WUBlastX LINE_L1 736711 737793 26 + . . scaffold1132 WUBlastX LINE_L1-Tx1 736969 737766 288 + . . scaffold1132 WUBlastX LINE_L1-Tx1 737819 738424 35 + . . scaffold1132 WUBlastX LINE_L1-Tx1 737975 738472 48 + . . scaffold1132 WUBlastX LINE_L1-Tx1 738074 738436 97 + . . scaffold1132 WUBlastX LINE_L1-Tx1 738227 738532 37 + . . scaffold1132 WUBlastX LTR_Pao 743071 743190 62 - . . scaffold1132 WUBlastX LTR_Pao 743165 743548 234 - . . scaffold1132 WUBlastX LTR_Pao 743521 743700 135 - . . scaffold1132 WUBlastX LINE_L2 743717 745207 563 + . . scaffold1132 WUBlastX LINE_L2 751591 752421 163 + . . scaffold1132 WUBlastX LINE_CR1 751756 752463 189 + . . scaffold1132 WUBlastX LINE_L2 751873 753294 367 + . . scaffold1132 WUBlastX LTR_Pao 753455 754069 154 - . . scaffold1132 WUBlastX LTR_Pao 753770 754081 226 - . . scaffold1132 WUBlastX LTR_Pao 753773 754660 216 - . . scaffold1132 WUBlastX LTR_Pao 754654 754788 28 - . . scaffold1132 WUBlastX LTR_Pao 754719 754952 84 - . . scaffold1132 WUBlastX LTR_Pao 754755 755150 60 - . . scaffold1132 WUBlastX LTR_Pao 754761 754988 95 - . . scaffold1132 WUBlastX LTR_Pao 754761 754949 104 - . . scaffold1132 WUBlastX LTR_Pao 755062 755718 65 - . . scaffold1132 TRF Tandem_Repeat 756029 756118 153 + . . scaffold1132 GLEAN promoter 756517 757516 0.999965 + . ID=CGI_10023332; scaffold1132 GLEAN mRNA 757517 758122 0.999965 + . ID=CGI_10023332; scaffold1132 WUBlastX DNA_hAT-Tip100 761000 761545 101 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 761096 761719 249 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 761731 762231 171 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 762185 763021 253 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 762215 762919 311 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 762227 762814 315 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 762934 763110 80 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 762934 763167 69 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 763006 763212 50 - . . scaffold1132 WUBlastX DNA_Academ 766348 766437 25 + . . scaffold1132 WUBlastX DNA_Academ 766757 766960 27 + . . scaffold1132 TRF Tandem_Repeat 780205 780966 1103 + . . scaffold1132 WUBlastX DNA_hAT-hATx 789082 789216 59 - . . scaffold1132 WUBlastX DNA_hAT-Ac 789106 789249 103 - . . scaffold1132 WUBlastX DNA_hAT-Ac 789195 790691 559 - . . scaffold1132 WUBlastX DNA_hAT-hATx 790131 790799 50 - . . scaffold1132 WUBlastX DNA_hAT 791069 791242 32 - . . scaffold1132 WUBlastX DNA_hAT-Ac 791102 791248 56 - . . scaffold1132 WUBlastX DNA_hAT-Ac 791105 791284 39 - . . scaffold1132 WUBlastX DNA_hAT-Tip100 791756 792079 98 + . . scaffold1132 WUBlastX DNA_hAT-Tip100 792069 792158 41 + . . scaffold1132 WUBlastX DNA_hAT-Tip100 792196 792954 327 + . . scaffold1132 GLEAN promoter 799156 800155 0.996081 + . ID=CGI_10023335; scaffold1132 TRF Tandem_Repeat 799365 799414 100 + . . scaffold1132 GLEAN mRNA 800156 807081 0.996081 + . ID=CGI_10023335; scaffold1132 TRF Tandem_Repeat 801694 801740 94 + . . scaffold1132 GLEAN promoter 809489 810488 0.995134 + . ID=CGI_10023336; scaffold1132 GLEAN mRNA 810489 813296 0.995134 + . ID=CGI_10023336; scaffold1132 GLEAN mRNA 813767 821244 1 - . ID=CGI_10023337; scaffold1132 TRF Tandem_Repeat 816647 816770 62 + . . scaffold1132 GLEAN promoter 821245 822244 1 - . ID=CGI_10023337; scaffold1132 GLEAN mRNA 830897 831605 1 - . ID=CGI_10023338; scaffold1132 GLEAN promoter 831606 832605 1 - . ID=CGI_10023338; scaffold1133 WUBlastX DNA_Kolobok-IS4 33765 34304 60 + . . scaffold1133 WUBlastX DNA_IS4EU 34968 35153 27 + . . scaffold1133 WUBlastX DNA_Kolobok-IS4 34968 35123 33 + . . scaffold1133 WUBlastX DNA_IS4EU 35414 36175 162 + . . scaffold1133 WUBlastX DNA_Kolobok-IS4 35414 36046 196 + . . scaffold1133 WUBlastX DNA_IS4EU 36872 37195 183 - . . scaffold1133 WUBlastX DNA_IS4EU 37204 37812 253 - . . scaffold1133 TRF Tandem_Repeat 41948 42007 75 + . . scaffold1134 WUBlastX DNA_Harbinger 9484 9558 23 - . . scaffold1134 WUBlastX DNA_Harbinger 9898 10074 64 - . . scaffold1134 WUBlastX DNA_Harbinger 10693 10896 32 - . . scaffold1134 WUBlastX DNA_Harbinger 10735 10935 42 - . . scaffold1134 GLEAN mRNA 13337 43211 0.55461 - . ID=CGI_10004505; scaffold1134 TRF Tandem_Repeat 32554 33344 1173 + . . scaffold1134 TRF Tandem_Repeat 40054 41185 1196 + . . scaffold1134 GLEAN promoter 43212 44211 0.55461 - . ID=CGI_10004505; scaffold1134 GLEAN promoter 48795 49794 0.922734 + . ID=CGI_10004507; scaffold1134 GLEAN mRNA 49750 54999 0.999997 - . ID=CGI_10004506; scaffold1134 GLEAN mRNA 49795 76853 0.922734 + . ID=CGI_10004507; scaffold1134 TRF Tandem_Repeat 53433 53499 80 + . . scaffold1134 TRF Tandem_Repeat 53996 54027 50 + . . scaffold1134 TRF Tandem_Repeat 54233 54280 96 + . . scaffold1134 GLEAN promoter 55000 55999 0.999997 - . ID=CGI_10004506; scaffold1134 TRF Tandem_Repeat 56688 56754 89 + . . scaffold1134 TRF Tandem_Repeat 62648 62754 196 + . . scaffold1134 TRF Tandem_Repeat 71913 71945 57 + . . scaffold1134 TRF Tandem_Repeat 73991 74129 118 + . . scaffold1134 WUBlastX LINE_RTE-BovB 75491 75637 55 - . . scaffold1134 GLEAN promoter 81928 82927 0.589971 + . ID=CGI_10004508; scaffold1134 WUBlastX LTR_Gypsy 82316 82693 87 + . . scaffold1134 WUBlastX LTR_Gypsy 82436 82684 178 + . . scaffold1134 WUBlastX LTR_Gypsy 82445 82786 119 + . . scaffold1134 WUBlastX LTR_Gypsy-Cigr 82725 82919 96 + . . scaffold1134 GLEAN mRNA 82928 83212 0.589971 + . ID=CGI_10004508; scaffold1134 GLEAN promoter 83159 84158 0.986288 + . ID=CGI_10004509; scaffold1134 GLEAN mRNA 84159 84539 0.986288 + . ID=CGI_10004509; scaffold1134 WUBlastX LTR_Ngaro 91624 91791 38 - . . scaffold1134 WUBlastX LTR_Ngaro 91651 91905 56 - . . scaffold1134 WUBlastX LTR_Ngaro 91940 92032 21 - . . scaffold1134 WUBlastX LTR_Ngaro 92024 92113 30 - . . scaffold1134 WUBlastX LTR_Ngaro 92039 92200 40 - . . scaffold1134 WUBlastX LTR_Ngaro 92167 92493 136 - . . scaffold1134 WUBlastX LTR_Ngaro 92167 92607 132 - . . scaffold1134 WUBlastX LTR_Ngaro 92508 92654 57 - . . scaffold1134 GLEAN mRNA 94991 96209 0.734519 - . ID=CGI_10004510; scaffold1134 GLEAN promoter 96210 97209 0.734519 - . ID=CGI_10004510; scaffold1136 TRF Tandem_Repeat 1603 1784 195 + . . scaffold1136 GLEAN mRNA 3908 8459 0.999943 - . ID=CGI_10003076; scaffold1136 GLEAN promoter 7639 8638 0.999988 + . ID=CGI_10003077; scaffold1136 GLEAN promoter 8460 9459 0.999943 - . ID=CGI_10003076; scaffold1136 GLEAN mRNA 8639 10918 0.999988 + . ID=CGI_10003077; scaffold1136 GLEAN promoter 9927 10926 0.618179 + . ID=CGI_10003078; scaffold1136 GLEAN mRNA 10927 11133 0.618179 + . ID=CGI_10003078; scaffold1136 GLEAN mRNA 12422 17189 0.916849 - . ID=CGI_10003079; scaffold1136 GLEAN promoter 17190 18189 0.916849 - . ID=CGI_10003079; scaffold1136 TRF Tandem_Repeat 24473 24504 64 + . . scaffold1136 TRF Tandem_Repeat 31485 31518 68 + . . scaffold1136 TRF Tandem_Repeat 31522 31607 172 + . . scaffold1136 TRF Tandem_Repeat 41645 41689 90 + . . scaffold1136 GLEAN promoter 44613 45612 0.999895 + . ID=CGI_10003080; scaffold1136 WUBlastX LINE_RTE-X 45110 45202 24 + . . scaffold1136 GLEAN mRNA 45613 63125 0.999895 + . ID=CGI_10003080; scaffold1136 WUBlastX LINE_I 45820 46434 20 + . . scaffold1136 WUBlastX LINE_RTE-X 46024 46506 103 + . . scaffold1136 WUBlastX LINE_RTE-X 46060 46464 158 + . . scaffold1136 WUBlastX LINE_RTE-X 46774 46827 21 + . . scaffold1136 WUBlastX LINE_RTE-X 46801 46854 20 + . . scaffold1137 WUBlastX LTR_Pao 337 1161 71 + . . scaffold1137 WUBlastX LTR_Pao 472 4821 882 + . . scaffold1137 WUBlastX LTR_Pao 4976 5527 298 + . . scaffold1137 WUBlastX LTR_Pao 5009 5620 296 + . . scaffold1138 GLEAN mRNA 1475 11469 0.998845 - . ID=CGI_10015363; scaffold1138 GLEAN promoter 11470 12469 0.998845 - . ID=CGI_10015363; scaffold1138 GLEAN mRNA 12333 14967 0.965218 - . ID=CGI_10015364; scaffold1138 GLEAN promoter 14968 15967 0.965218 - . ID=CGI_10015364; scaffold1138 WUBlastX LINE_Penelope 25616 26074 22 - . . scaffold1138 WUBlastX LTR_Gypsy 32790 33221 136 + . . scaffold1138 WUBlastX LTR_Gypsy 32862 33221 323 + . . scaffold1138 WUBlastX LTR_Gypsy 33203 34537 924 + . . scaffold1138 WUBlastX LTR_Gypsy 33965 34645 187 + . . scaffold1138 WUBlastX DNA_MuDR 34632 35054 58 + . . scaffold1138 GLEAN mRNA 36912 45300 0.999351 - . ID=CGI_10015365; scaffold1138 TRF Tandem_Repeat 40713 40758 67 + . . scaffold1138 GLEAN promoter 45301 46300 0.999351 - . ID=CGI_10015365; scaffold1138 GLEAN mRNA 45767 65466 0.906589 - . ID=CGI_10015366; scaffold1138 GLEAN promoter 65467 66466 0.906589 - . ID=CGI_10015366; scaffold1138 TRF Tandem_Repeat 68036 68134 87 + . . scaffold1138 GLEAN mRNA 73626 81685 0.544788 - . ID=CGI_10015367; scaffold1138 TRF Tandem_Repeat 76717 76766 57 + . . scaffold1138 GLEAN promoter 81686 82685 0.544788 - . ID=CGI_10015367; scaffold1138 WUBlastX LINE_RTE-BovB 83398 83589 154 + . . scaffold1138 GLEAN mRNA 86036 92345 1 - . ID=CGI_10015368; scaffold1138 GLEAN promoter 92346 93345 1 - . ID=CGI_10015368; scaffold1138 GLEAN mRNA 98954 105497 0.999999 - . ID=CGI_10015369; scaffold1138 GLEAN promoter 105498 106497 0.999999 - . ID=CGI_10015369; scaffold1138 GLEAN mRNA 105975 116291 0.681204 - . ID=CGI_10015370; scaffold1138 GLEAN promoter 116292 117291 0.681204 - . ID=CGI_10015370; scaffold1138 TRF Tandem_Repeat 120647 120707 122 + . . scaffold1138 GLEAN mRNA 125090 166855 0.369743 - . ID=CGI_10015371; scaffold1138 GLEAN promoter 166856 167855 0.369743 - . ID=CGI_10015371; scaffold1138 TRF Tandem_Repeat 170156 170195 80 + . . scaffold1138 TRF Tandem_Repeat 171611 172047 314 + . . scaffold1138 TRF Tandem_Repeat 171622 172058 412 + . . scaffold1138 TRF Tandem_Repeat 171745 172016 169 + . . scaffold1138 GLEAN promoter 173466 174465 0.789389 + . ID=CGI_10015372; scaffold1138 WUBlastX LTR_Gypsy 174337 174477 34 + . . scaffold1138 GLEAN mRNA 174466 179423 0.789389 + . ID=CGI_10015372; scaffold1138 WUBlastX LTR_Gypsy 175441 176451 32 + . . scaffold1138 WUBlastX LTR_Gypsy 175902 176087 38 + . . scaffold1138 WUBlastX LTR_Gypsy 176098 176454 84 + . . scaffold1138 WUBlastX DNA_TcMar-Pogo 182393 182512 60 + . . scaffold1138 WUBlastX DNA_MuDR 183260 183433 66 + . . scaffold1138 WUBlastX DNA_MuDR 183284 183460 62 + . . scaffold1138 GLEAN mRNA 183755 192154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX LINE_CR1 185466 185804 90 + . . scaffold1138 WUBlastX LINE_CR1 185523 185804 109 + . . scaffold1138 WUBlastX LINE_L2 185523 185960 29 + . . scaffold1138 WUBlastX LINE_CR1 185523 185879 70 + . . scaffold1138 GLEAN promoter 185841 186840 0.716431 + . ID=CGI_10015374; scaffold1138 GLEAN mRNA 186841 191383 0.716431 + . ID=CGI_10015374; scaffold1138 WUBlastX DNA_P 189076 189189 24 + . . scaffold1138 WUBlastX DNA_P 189525 190187 104 + . . scaffold1138 WUBlastX DNA_P 189705 190187 124 + . . scaffold1138 WUBlastX DNA_P 190172 191221 131 + . . scaffold1138 WUBlastX DNA_P 191003 191308 44 + . . scaffold1138 WUBlastX LINE_L2 192030 192215 35 - . . scaffold1138 WUBlastX LINE_Jockey 192033 192251 33 - . . scaffold1138 GLEAN promoter 192155 193154 0.999676 - . ID=CGI_10015373; scaffold1138 WUBlastX RC_Helitron 193680 193901 41 - . . scaffold1138 WUBlastX RC_Helitron 193713 193898 59 - . . scaffold1138 WUBlastX RC_Helitron 194035 194112 26 - . . scaffold1138 WUBlastX RC_Helitron 194097 194135 25 - . . scaffold1138 WUBlastX RC_Helitron 194269 195132 120 - . . scaffold1138 WUBlastX RC_Helitron 194725 195210 65 - . . scaffold1138 WUBlastX RC_Helitron 194725 195426 41 - . . scaffold1138 TRF Tandem_Repeat 197333 197386 108 + . . scaffold1138 WUBlastX LTR_Gypsy-Troyk 198892 199104 71 - . . scaffold1138 WUBlastX LTR_Gypsy-Troyk 199145 199390 119 - . . scaffold1138 WUBlastX DNA_TcMar-Fot1 204309 205484 219 - . . scaffold1138 WUBlastX DNA_TcMar-Fot1 204489 205484 324 - . . scaffold1138 WUBlastX DNA_TcMar-Tigge 204597 205661 137 - . . scaffold1138 WUBlastX LINE_RTE-X 206848 207048 57 - . . scaffold1138 WUBlastX LINE_RTE-X 206875 207042 117 - . . scaffold1138 WUBlastX LINE_L2 206884 207117 54 - . . scaffold1138 WUBlastX DNA_IS4EU 207121 207186 21 + . . scaffold1138 WUBlastX DNA_IS4EU 207723 208052 44 + . . scaffold1138 WUBlastX DNA_NOF 207819 208127 46 + . . scaffold1138 WUBlastX DNA_NOF? 207861 208241 41 + . . scaffold1138 WUBlastX LINE_Penelope 220435 220653 38 + . . scaffold1138 WUBlastX LINE_Penelope 220492 220725 73 + . . scaffold1138 WUBlastX DNA_PiggyBac 231664 231798 23 + . . scaffold1138 WUBlastX DNA_PiggyBac 232762 233136 76 + . . scaffold1138 WUBlastX DNA_PiggyBac 232765 233034 81 + . . scaffold1138 TRF Tandem_Repeat 239732 239958 359 + . . scaffold1138 TRF Tandem_Repeat 241498 241527 60 + . . scaffold1138 WUBlastX LINE_RTE-BovB 254481 254906 53 + . . scaffold1138 WUBlastX LINE_RTE-BovB 254553 254975 140 + . . scaffold1138 WUBlastX LINE_RTE-BovB 254607 255041 101 + . . scaffold1138 WUBlastX LINE_RTE-BovB 255043 255156 57 + . . scaffold1138 WUBlastX LINE_RTE-BovB 255344 255580 80 + . . scaffold1138 WUBlastX DNA_hAT-Blackja 255574 257256 621 + . . scaffold1138 TRF Tandem_Repeat 260944 261474 482 + . . scaffold1138 TRF Tandem_Repeat 261023 261541 398 + . . scaffold1138 GLEAN promoter 272468 273467 0.221988 + . ID=CGI_10015375; scaffold1138 GLEAN mRNA 273468 292780 0.221988 + . ID=CGI_10015375; scaffold1138 WUBlastX DNA_En-Spm 274314 275024 397 + . . scaffold1138 WUBlastX DNA_En-Spm 275017 275997 644 + . . scaffold1138 WUBlastX DNA_En-Spm 275952 276137 61 + . . scaffold1138 GLEAN mRNA 277730 278029 0.618041 - . ID=CGI_10015376; scaffold1138 GLEAN promoter 278030 279029 0.618041 - . ID=CGI_10015376; scaffold1138 WUBlastX DNA_TcMar-Fot1 288922 289320 138 + . . scaffold1138 GLEAN mRNA 292871 298316 0.998782 - . ID=CGI_10015377; scaffold1138 WUBlastX DNA_Harbinger 296461 296673 73 + . . scaffold1138 GLEAN promoter 298317 299316 0.998782 - . ID=CGI_10015377; scaffold1138 TRF Tandem_Repeat 299206 299233 56 + . . scaffold1138 TRF Tandem_Repeat 301966 302122 171 + . . scaffold1138 WUBlastX LINE_L1-Tx1 304431 305426 66 - . . scaffold1138 WUBlastX LINE_L1 304665 305423 76 - . . scaffold1138 WUBlastX LINE_L1 304878 305423 159 - . . scaffold1138 WUBlastX LINE_DRE 305417 305911 21 - . . scaffold1138 WUBlastX LINE_L1 305444 305791 141 - . . scaffold1138 WUBlastX LINE_L1-Tx1 305444 305677 151 - . . scaffold1138 WUBlastX DNA_NOF? 306319 306798 39 - . . scaffold1138 WUBlastX LINE_L1 308078 308206 46 - . . scaffold1138 TRF Tandem_Repeat 311626 311688 126 + . . scaffold1138 GLEAN mRNA 315777 319269 1 - . ID=CGI_10015378; scaffold1138 GLEAN promoter 319270 320269 1 - . ID=CGI_10015378; scaffold1138 GLEAN mRNA 326360 332394 0.623483 - . ID=CGI_10015379; scaffold1138 TRF Tandem_Repeat 329532 329595 101 + . . scaffold1138 GLEAN promoter 332395 333394 0.623483 - . ID=CGI_10015379; scaffold1138 TRF Tandem_Repeat 333396 333527 126 + . . scaffold1138 GLEAN mRNA 336979 340822 0.984052 - . ID=CGI_10015380; scaffold1138 GLEAN promoter 340823 341822 0.984052 - . ID=CGI_10015380; scaffold1138 GLEAN promoter 349479 350478 0.999341 + . ID=CGI_10015381; scaffold1138 GLEAN mRNA 350479 362117 0.999341 + . ID=CGI_10015381; scaffold1138 TRF Tandem_Repeat 354732 355246 715 + . . scaffold1138 TRF Tandem_Repeat 361363 361394 57 + . . scaffold1138 TRF Tandem_Repeat 364081 364127 94 + . . scaffold1138 GLEAN promoter 369845 370844 0.999999 + . ID=CGI_10015382; scaffold1138 GLEAN mRNA 370845 371258 0.999999 + . ID=CGI_10015382; scaffold1138 TRF Tandem_Repeat 392648 392711 128 + . . scaffold1138 TRF Tandem_Repeat 393904 393932 58 + . . scaffold1138 TRF Tandem_Repeat 394079 394138 120 + . . scaffold1138 TRF Tandem_Repeat 396301 396366 123 + . . scaffold1138 TRF Tandem_Repeat 403603 403679 154 + . . scaffold1138 WUBlastX LINE_RTE-X 404274 404816 125 - . . scaffold1138 TRF Tandem_Repeat 418298 418333 72 + . . scaffold1138 TRF Tandem_Repeat 420480 420505 52 + . . scaffold1139 GLEAN promoter 1 96 1 + . ID=CGI_10000263; scaffold1139 GLEAN mRNA 97 3374 1 + . ID=CGI_10000263; scaffold114 WUBlastX LTR_Ngaro 4230 4592 99 + . . scaffold114 TRF Tandem_Repeat 5510 5550 55 + . . scaffold114 WUBlastX DNA_Crypton 18684 19766 245 + . . scaffold114 TRF Tandem_Repeat 23844 23941 72 + . . scaffold1140 WUBlastX LINE_Penelope 55 1659 513 - . . scaffold1140 WUBlastX LINE_Penelope 1582 1680 24 - . . scaffold1140 GLEAN mRNA 2113 2826 0.998504 - . ID=CGI_10001239; scaffold1140 GLEAN promoter 2827 3826 0.998504 - . ID=CGI_10001239; scaffold1140 WUBlastX DNA_Crypton 3306 3932 152 + . . scaffold1140 WUBlastX DNA_Crypton 3931 4365 53 + . . scaffold1140 WUBlastX DNA_Crypton 3982 4227 86 + . . scaffold1140 TRF Tandem_Repeat 7412 7768 222 + . . scaffold1140 TRF Tandem_Repeat 7412 7736 160 + . . scaffold1140 TRF Tandem_Repeat 7608 7735 103 + . . scaffold1140 GLEAN promoter 9533 10532 1 + . ID=CGI_10001240; scaffold1140 GLEAN mRNA 10533 10874 1 + . ID=CGI_10001240; scaffold1140 WUBlastX DNA_TcMar-Fot1 11505 11675 49 + . . scaffold1140 GLEAN mRNA 11544 14792 0.943975 - . ID=CGI_10001241; scaffold1140 GLEAN promoter 14793 15792 0.943975 - . ID=CGI_10001241; scaffold1140 GLEAN mRNA 14878 15084 0.585167 - . ID=CGI_10001242; scaffold1140 GLEAN promoter 15008 16007 0.999068 + . ID=CGI_10001243; scaffold1140 GLEAN promoter 15085 16084 0.585167 - . ID=CGI_10001242; scaffold1140 GLEAN mRNA 16008 16580 0.999068 + . ID=CGI_10001243; scaffold1141 TRF Tandem_Repeat 2859 2963 112 + . . scaffold1141 TRF Tandem_Repeat 5174 5278 103 + . . scaffold1141 TRF Tandem_Repeat 6084 6146 126 + . . scaffold1141 GLEAN promoter 7304 8303 0.528385 + . ID=CGI_10003193; scaffold1141 GLEAN mRNA 8304 11564 0.528385 + . ID=CGI_10003193; scaffold1141 TRF Tandem_Repeat 8670 8700 62 + . . scaffold1141 WUBlastX LTR_DIRS 11838 12053 104 - . . scaffold1141 WUBlastX LTR_DIRS 12062 12193 22 - . . scaffold1141 WUBlastX LTR_DIRS 12367 12783 77 - . . scaffold1141 WUBlastX LTR_DIRS 12490 12774 93 - . . scaffold1141 WUBlastX LTR_DIRS 12547 12780 93 - . . scaffold1141 WUBlastX LTR_DIRS 12604 12783 105 - . . scaffold1141 WUBlastX LTR_DIRS 12786 13412 259 - . . scaffold1141 TRF Tandem_Repeat 17369 17779 561 + . . scaffold1141 WUBlastX LTR_Gypsy 23035 24234 414 + . . scaffold1141 WUBlastX LTR_Gypsy 24063 24983 460 + . . scaffold1141 WUBlastX LTR_Gypsy 24249 25001 827 + . . scaffold1141 WUBlastX LTR_Gypsy 24714 25064 166 + . . scaffold1141 WUBlastX LTR_Gypsy 25531 27123 343 + . . scaffold1141 WUBlastX LTR_Gypsy 25828 27156 1124 + . . scaffold1141 WUBlastX LTR_Gypsy 27568 28101 60 + . . scaffold1141 WUBlastX LTR_Gypsy 27802 28377 306 + . . scaffold1141 TRF Tandem_Repeat 59050 60612 1711 + . . scaffold1141 TRF Tandem_Repeat 59096 60611 1915 + . . scaffold1141 TRF Tandem_Repeat 62812 63533 976 + . . scaffold1141 GLEAN mRNA 65201 65365 1 - . ID=CGI_10003194; scaffold1141 GLEAN promoter 65366 66234 1 - . ID=CGI_10003194; scaffold1142 TRF Tandem_Repeat 729 827 173 + . . scaffold1142 TRF Tandem_Repeat 876 969 125 + . . scaffold1142 TRF Tandem_Repeat 2822 2960 84 + . . scaffold1142 GLEAN promoter 16099 17098 0.998343 + . ID=CGI_10008525; scaffold1142 GLEAN mRNA 17099 55959 0.998343 + . ID=CGI_10008525; scaffold1142 TRF Tandem_Repeat 23967 24007 68 + . . scaffold1142 WUBlastX LINE_L1-Tx1 27786 28511 67 + . . scaffold1142 WUBlastX LINE_L1 27897 28544 108 + . . scaffold1142 TRF Tandem_Repeat 32324 32356 66 + . . scaffold1142 TRF Tandem_Repeat 38638 38708 142 + . . scaffold1142 TRF Tandem_Repeat 50952 51041 153 + . . scaffold1142 GLEAN mRNA 56489 57025 0.729738 - . ID=CGI_10008526; scaffold1142 GLEAN promoter 57026 58025 0.729738 - . ID=CGI_10008526; scaffold1142 GLEAN mRNA 60904 88431 1 - . ID=CGI_10008527; scaffold1142 TRF Tandem_Repeat 62620 62664 90 + . . scaffold1142 GLEAN promoter 85726 86725 0.836238 + . ID=CGI_10008528; scaffold1142 GLEAN mRNA 86726 89360 0.836238 + . ID=CGI_10008528; scaffold1142 GLEAN promoter 88432 89431 1 - . ID=CGI_10008527; scaffold1142 TRF Tandem_Repeat 89685 89738 108 + . . scaffold1142 TRF Tandem_Repeat 89921 89995 51 + . . scaffold1142 GLEAN mRNA 91471 93258 0.993907 - . ID=CGI_10008529; scaffold1142 GLEAN promoter 93259 94258 0.993907 - . ID=CGI_10008529; scaffold1142 GLEAN mRNA 94253 99896 1 - . ID=CGI_10008530; scaffold1142 GLEAN promoter 99897 100896 1 - . ID=CGI_10008530; scaffold1142 WUBlastX LINE_Penelope 102819 103259 39 - . . scaffold1142 WUBlastX LINE_Penelope 103241 103426 41 - . . scaffold1142 WUBlastX LINE_CR1 105948 106016 24 + . . scaffold1142 WUBlastX LINE_RTE-X 106321 106518 119 + . . scaffold1142 GLEAN promoter 106501 107500 0.972565 + . ID=CGI_10008531; scaffold1142 WUBlastX LINE_RTE-X 106515 106724 105 + . . scaffold1142 WUBlastX LINE_RTE-X 106732 106968 50 + . . scaffold1142 GLEAN mRNA 107501 125336 0.972565 + . ID=CGI_10008531; scaffold1142 TRF Tandem_Repeat 131248 131406 141 + . . scaffold1142 TRF Tandem_Repeat 131248 131391 76 + . . scaffold1142 TRF Tandem_Repeat 131248 131346 74 + . . scaffold1142 GLEAN mRNA 141387 141662 0.564457 - . ID=CGI_10008532; scaffold1142 GLEAN promoter 141663 142662 0.564457 - . ID=CGI_10008532; scaffold1142 TRF Tandem_Repeat 146541 146592 95 + . . scaffold1142 TRF Tandem_Repeat 149267 149333 89 + . . scaffold1142 TRF Tandem_Repeat 149828 149857 60 + . . scaffold1142 TRF Tandem_Repeat 151373 151439 89 + . . scaffold1142 GLEAN promoter 151786 152785 1 + . ID=CGI_10008533; scaffold1142 GLEAN mRNA 152786 153670 1 + . ID=CGI_10008533; scaffold1142 TRF Tandem_Repeat 159535 159748 213 + . . scaffold1142 TRF Tandem_Repeat 159535 159748 211 + . . scaffold1142 TRF Tandem_Repeat 160212 160267 85 + . . scaffold1142 TRF Tandem_Repeat 162362 162407 92 + . . scaffold1142 GLEAN promoter 164338 165337 0.99958 + . ID=CGI_10008534; scaffold1142 GLEAN mRNA 165338 166486 0.99958 + . ID=CGI_10008534; scaffold1142 TRF Tandem_Repeat 166539 166578 80 + . . scaffold1142 TRF Tandem_Repeat 171623 171986 336 + . . scaffold1142 TRF Tandem_Repeat 174517 174543 54 + . . scaffold1142 WUBlastX LTR_Gypsy 176308 176436 23 - . . scaffold1142 WUBlastX LTR_Gypsy 176459 176743 147 - . . scaffold1142 WUBlastX LINE_L1-Tx1 181867 182769 324 - . . scaffold1142 WUBlastX LINE_L1-Tx1 182768 184381 707 - . . scaffold1142 WUBlastX LINE_L1-Tx1 184323 184730 80 - . . scaffold1142 WUBlastX LINE_L1-Tx1 184494 184733 111 - . . scaffold1142 WUBlastX LINE_L1-Tx1 184750 185343 120 - . . scaffold1142 WUBlastX LINE_L1-Tx1 185360 185875 219 - . . scaffold1142 WUBlastX LINE_L1 185363 185794 236 - . . scaffold1142 TRF Tandem_Repeat 189653 190442 804 + . . scaffold1142 WUBlastX DNA_IS4EU 193626 193835 69 + . . scaffold1142 WUBlastX DNA_IS4EU 194145 194234 52 + . . scaffold1142 GLEAN promoter 198237 199236 0.544674 + . ID=CGI_10008535; scaffold1142 GLEAN mRNA 199237 208184 0.544674 + . ID=CGI_10008535; scaffold1142 TRF Tandem_Repeat 200397 200440 88 + . . scaffold1143 TRF Tandem_Repeat 3593 3642 100 + . . scaffold1143 TRF Tandem_Repeat 13319 13375 105 + . . scaffold1143 WUBlastX DNA_IS4EU 23080 23295 22 + . . scaffold1143 WUBlastX DNA_IS4EU 23080 23211 35 + . . scaffold1143 WUBlastX DNA_IS4EU 23399 23782 152 + . . scaffold1143 WUBlastX DNA_IS4EU 23770 24177 239 + . . scaffold1143 WUBlastX DNA_Kolobok-IS4 24768 25292 184 - . . scaffold1143 WUBlastX DNA_MuDR 28663 28965 76 - . . scaffold1143 WUBlastX DNA_MuDR 28744 29493 288 - . . scaffold1143 WUBlastX DNA_MuDR 29472 29909 43 - . . scaffold1143 WUBlastX DNA_MuDR 29769 30002 41 - . . scaffold1143 TRF Tandem_Repeat 35760 36840 1574 + . . scaffold1143 TRF Tandem_Repeat 45680 46425 920 + . . scaffold1143 WUBlastX LINE_Proto2 75193 75327 28 - . . scaffold1143 GLEAN mRNA 77238 82579 0.990086 - . ID=CGI_10009137; scaffold1143 GLEAN promoter 82580 83579 0.990086 - . ID=CGI_10009137; scaffold1143 GLEAN mRNA 82934 83539 0.733495 - . ID=CGI_10009138; scaffold1143 GLEAN promoter 83540 84539 0.733495 - . ID=CGI_10009138; scaffold1143 TRF Tandem_Repeat 90264 90302 55 + . . scaffold1143 TRF Tandem_Repeat 92138 92204 89 + . . scaffold1143 GLEAN mRNA 93968 107469 0.756564 - . ID=CGI_10009139; scaffold1143 GLEAN promoter 107470 108469 0.756564 - . ID=CGI_10009139; scaffold1143 TRF Tandem_Repeat 108615 108682 52 + . . scaffold1143 TRF Tandem_Repeat 108621 108681 54 + . . scaffold1143 GLEAN promoter 110019 111018 0.49583 + . ID=CGI_10009140; scaffold1143 GLEAN mRNA 111019 114569 0.49583 + . ID=CGI_10009140; scaffold1143 TRF Tandem_Repeat 111837 111885 98 + . . scaffold1143 TRF Tandem_Repeat 114036 114128 53 + . . scaffold1143 TRF Tandem_Repeat 120672 120767 183 + . . scaffold1143 GLEAN mRNA 121955 124624 0.796524 - . ID=CGI_10009141; scaffold1143 WUBlastX DNA_IS4EU 123029 123154 32 - . . scaffold1143 TRF Tandem_Repeat 123251 123287 74 + . . scaffold1143 WUBlastX DNA_IS4EU 123287 123934 71 - . . scaffold1143 WUBlastX DNA_IS4EU 123305 123694 96 - . . scaffold1143 WUBlastX DNA_IS4EU 123305 124111 70 - . . scaffold1143 WUBlastX DNA_Kolobok-IS4 123305 123835 87 - . . scaffold1143 GLEAN promoter 124625 125624 0.796524 - . ID=CGI_10009141; scaffold1143 TRF Tandem_Repeat 130716 130881 287 + . . scaffold1143 TRF Tandem_Repeat 145321 145410 146 + . . scaffold1143 TRF Tandem_Repeat 145577 145615 78 + . . scaffold1143 TRF Tandem_Repeat 145701 146082 349 + . . scaffold1143 TRF Tandem_Repeat 148077 148113 65 + . . scaffold1143 WUBlastX LTR_Gypsy 150076 150438 25 + . . scaffold1143 WUBlastX LTR_Gypsy 150157 150447 102 + . . scaffold1143 WUBlastX LTR_Gypsy 150205 150447 116 + . . scaffold1143 TRF Tandem_Repeat 150456 151257 853 + . . scaffold1143 TRF Tandem_Repeat 155740 155780 82 + . . scaffold1143 TRF Tandem_Repeat 168610 168652 59 + . . scaffold1143 TRF Tandem_Repeat 168943 168998 112 + . . scaffold1143 WUBlastX LTR_Gypsy 172622 172912 97 + . . scaffold1143 WUBlastX LTR_Gypsy 172670 172912 110 + . . scaffold1143 TRF Tandem_Repeat 172921 173751 723 + . . scaffold1143 TRF Tandem_Repeat 175870 175914 90 + . . scaffold1143 TRF Tandem_Repeat 178966 178996 53 + . . scaffold1143 TRF Tandem_Repeat 178994 179044 93 + . . scaffold1143 TRF Tandem_Repeat 179120 179165 92 + . . scaffold1143 TRF Tandem_Repeat 185566 186448 1234 + . . scaffold1143 TRF Tandem_Repeat 189912 189995 73 + . . scaffold1143 GLEAN mRNA 195403 212390 0.998746 - . ID=CGI_10009142; scaffold1143 TRF Tandem_Repeat 197571 197754 289 + . . scaffold1143 TRF Tandem_Repeat 199852 200267 710 + . . scaffold1143 TRF Tandem_Repeat 201821 202462 138 + . . scaffold1143 TRF Tandem_Repeat 201838 202510 869 + . . scaffold1143 TRF Tandem_Repeat 202354 202484 113 + . . scaffold1143 TRF Tandem_Repeat 202731 203203 806 + . . scaffold1143 GLEAN promoter 203793 204792 0.995236 + . ID=CGI_10009143; scaffold1143 GLEAN mRNA 204793 209766 0.995236 + . ID=CGI_10009143; scaffold1143 GLEAN promoter 212391 213390 0.998746 - . ID=CGI_10009142; scaffold1143 WUBlastX LINE_L1-Tx1 213087 213824 434 + . . scaffold1143 WUBlastX LINE_L1-Tx1 214770 215393 173 + . . scaffold1143 WUBlastX LINE_L1-Tx1 214935 215399 286 + . . scaffold1143 WUBlastX LINE_L1-Tx1 215380 216075 225 + . . scaffold1143 WUBlastX LINE_L1-Tx1 216063 216650 62 + . . scaffold1143 WUBlastX LINE_L1 216567 216677 24 + . . scaffold1143 GLEAN promoter 218435 219434 0.836252 + . ID=CGI_10009144; scaffold1143 TRF Tandem_Repeat 218717 218742 52 + . . scaffold1143 GLEAN mRNA 219435 219947 0.836252 + . ID=CGI_10009144; scaffold1144 WUBlastX LINE_L2 5306 5965 94 - . . scaffold1144 WUBlastX LINE_CR1-L2 5564 5965 106 - . . scaffold1144 WUBlastX LINE_RTE-X 8853 9032 29 - . . scaffold1144 WUBlastX LINE_RTE-X 9035 9937 164 - . . scaffold1144 WUBlastX LINE_RTE-X 9077 9670 179 - . . scaffold1144 WUBlastX LINE_L1-Tx1 9839 9970 24 - . . scaffold1144 WUBlastX LINE_RTE-BovB 9848 10021 23 - . . scaffold1144 WUBlastX LINE_RTE-BovB 10332 10898 72 - . . scaffold1144 WUBlastX LINE_RTE-X 10424 10573 80 - . . scaffold1144 WUBlastX LINE_RTE-X 10581 11279 176 - . . scaffold1144 WUBlastX LINE_RTE-X 10581 11816 61 - . . scaffold1144 WUBlastX LINE_RTE-X 11697 11870 43 - . . scaffold1144 WUBlastX LINE_L2 11876 12616 122 - . . scaffold1144 WUBlastX LINE_CR1 12482 12640 86 - . . scaffold1144 WUBlastX LINE_L2 12642 13301 234 - . . scaffold1144 WUBlastX LINE_I 14524 14652 20 - . . scaffold1144 WUBlastX DNA_Crypton 17538 17714 80 + . . scaffold1144 WUBlastX DNA_TcMar-Tc1 18104 18271 72 - . . scaffold1144 WUBlastX DNA_TcMar-Tc1 18292 18795 201 - . . scaffold1144 WUBlastX DNA_TcMar-Tc1 18749 19153 57 - . . scaffold1144 GLEAN promoter 20559 21558 0.999846 + . ID=CGI_10013953; scaffold1144 GLEAN mRNA 21559 26404 0.999846 + . ID=CGI_10013953; scaffold1144 TRF Tandem_Repeat 22657 22741 170 + . . scaffold1144 GLEAN mRNA 27669 39434 0.999675 - . ID=CGI_10013954; scaffold1144 TRF Tandem_Repeat 30106 30185 94 + . . scaffold1144 GLEAN promoter 39435 40434 0.999675 - . ID=CGI_10013954; scaffold1144 WUBlastX LTR_Gypsy 47279 47992 49 - . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 47396 47968 122 - . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 47510 47983 149 - . . scaffold1144 WUBlastX LTR_Gypsy 47657 48184 85 - . . scaffold1144 GLEAN mRNA 50483 52467 0.98283 - . ID=CGI_10013955; scaffold1144 GLEAN promoter 52280 53279 0.999573 + . ID=CGI_10013956; scaffold1144 GLEAN promoter 52468 53467 0.98283 - . ID=CGI_10013955; scaffold1144 GLEAN mRNA 53280 65120 0.999573 + . ID=CGI_10013956; scaffold1144 GLEAN mRNA 53914 78184 0.582371 - . ID=CGI_10013957; scaffold1144 TRF Tandem_Repeat 56163 56965 1309 + . . scaffold1144 TRF Tandem_Repeat 57013 57066 65 + . . scaffold1144 TRF Tandem_Repeat 57013 57069 80 + . . scaffold1144 TRF Tandem_Repeat 60582 60623 59 + . . scaffold1144 TRF Tandem_Repeat 62647 63467 789 + . . scaffold1144 GLEAN promoter 67748 68747 0.999898 + . ID=CGI_10013958; scaffold1144 GLEAN mRNA 68748 76828 0.999898 + . ID=CGI_10013958; scaffold1144 TRF Tandem_Repeat 70588 70637 100 + . . scaffold1144 GLEAN promoter 78185 79184 0.582371 - . ID=CGI_10013957; scaffold1144 WUBlastX LTR_ERV1 78833 79006 23 - . . scaffold1144 GLEAN mRNA 78922 87445 0.757486 - . ID=CGI_10013959; scaffold1144 GLEAN promoter 82130 83129 0.373633 + . ID=CGI_10013960; scaffold1144 GLEAN mRNA 83130 122943 0.373633 + . ID=CGI_10013960; scaffold1144 GLEAN promoter 87446 88445 0.757486 - . ID=CGI_10013959; scaffold1144 TRF Tandem_Repeat 95310 95551 263 + . . scaffold1144 TRF Tandem_Repeat 95369 95551 251 + . . scaffold1144 TRF Tandem_Repeat 110485 110583 173 + . . scaffold1144 TRF Tandem_Repeat 110632 110725 116 + . . scaffold1144 TRF Tandem_Repeat 111315 111543 128 + . . scaffold1144 TRF Tandem_Repeat 111315 111453 84 + . . scaffold1144 TRF Tandem_Repeat 112177 112204 56 + . . scaffold1144 TRF Tandem_Repeat 123151 123181 62 + . . scaffold1144 TRF Tandem_Repeat 125743 125773 62 + . . scaffold1144 TRF Tandem_Repeat 126244 126935 940 + . . scaffold1144 TRF Tandem_Repeat 132940 133128 149 + . . scaffold1144 TRF Tandem_Repeat 142337 142578 358 + . . scaffold1144 TRF Tandem_Repeat 143193 143534 389 + . . scaffold1144 TRF Tandem_Repeat 143193 143535 391 + . . scaffold1144 TRF Tandem_Repeat 143201 143536 498 + . . scaffold1144 TRF Tandem_Repeat 144423 144453 62 + . . scaffold1144 TRF Tandem_Repeat 146385 146503 157 + . . scaffold1144 GLEAN promoter 154055 155054 0.66251 + . ID=CGI_10013961; scaffold1144 GLEAN mRNA 155055 161983 0.66251 + . ID=CGI_10013961; scaffold1144 WUBlastX LTR_Gypsy 173111 173776 118 - . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 173237 173743 161 - . . scaffold1144 WUBlastX LTR_Gypsy 174039 174404 31 - . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 174170 174235 41 - . . scaffold1144 WUBlastX LTR_Gypsy-Cigr 174222 174380 56 - . . scaffold1144 WUBlastX LTR_Gypsy 174252 174386 60 - . . scaffold1144 WUBlastX LTR_Gypsy 174798 174998 47 - . . scaffold1144 WUBlastX LTR_Gypsy 174846 174998 62 - . . scaffold1144 WUBlastX LTR_Gypsy 175000 175185 86 - . . scaffold1144 WUBlastX LTR_Gypsy 175003 175224 55 - . . scaffold1144 TRF Tandem_Repeat 177017 177052 65 + . . scaffold1144 WUBlastX LINE_L2 177142 178362 605 - . . scaffold1144 WUBlastX LINE_L2 178362 179777 268 - . . scaffold1144 WUBlastX LINE_L2 178836 179750 275 - . . scaffold1144 TRF Tandem_Repeat 185307 185355 98 + . . scaffold1144 TRF Tandem_Repeat 192289 192339 102 + . . scaffold1144 TRF Tandem_Repeat 197679 197737 118 + . . scaffold1144 TRF Tandem_Repeat 208983 209025 86 + . . scaffold1144 GLEAN promoter 216460 217459 0.9884 + . ID=CGI_10013962; scaffold1144 GLEAN mRNA 217460 223385 0.9884 + . ID=CGI_10013962; scaffold1144 WUBlastX LINE_RTE-X 229137 229910 184 + . . scaffold1144 WUBlastX LINE_RTE-X 229894 230148 29 + . . scaffold1144 TRF Tandem_Repeat 256086 256123 76 + . . scaffold1144 TRF Tandem_Repeat 268634 268673 80 + . . scaffold1144 TRF Tandem_Repeat 289041 289082 68 + . . scaffold1144 GLEAN promoter 297871 298870 0.997294 + . ID=CGI_10013963; scaffold1144 GLEAN mRNA 298871 307397 0.997294 + . ID=CGI_10013963; scaffold1144 TRF Tandem_Repeat 327010 327046 74 + . . scaffold1144 WUBlastX LINE_RTE-X 331083 331661 108 + . . scaffold1144 WUBlastX LINE_RTE-X 331242 331658 166 + . . scaffold1144 WUBlastX LINE_RTE-X 331691 331753 21 + . . scaffold1144 GLEAN mRNA 333558 340424 0.928205 - . ID=CGI_10013964; scaffold1144 GLEAN promoter 340425 341424 0.928205 - . ID=CGI_10013964; scaffold1144 TRF Tandem_Repeat 356387 356420 59 + . . scaffold1144 TRF Tandem_Repeat 359031 359690 406 + . . scaffold1144 TRF Tandem_Repeat 359039 359690 350 + . . scaffold1144 GLEAN promoter 360613 361612 0.999846 + . ID=CGI_10013965; scaffold1144 TRF Tandem_Repeat 360688 360718 62 + . . scaffold1144 TRF Tandem_Repeat 360734 360792 75 + . . scaffold1144 GLEAN mRNA 361613 366783 0.999846 + . ID=CGI_10013965; scaffold1144 GLEAN mRNA 365366 370692 0.928552 - . ID=CGI_10013966; scaffold1144 TRF Tandem_Repeat 370473 370503 53 + . . scaffold1144 GLEAN promoter 370693 371692 0.928552 - . ID=CGI_10013966; scaffold1144 TRF Tandem_Repeat 377034 377215 206 + . . scaffold1144 TRF Tandem_Repeat 377051 377236 194 + . . scaffold1144 TRF Tandem_Repeat 377051 377236 194 + . . scaffold1144 TRF Tandem_Repeat 377248 377349 109 + . . scaffold1146 GLEAN promoter 133 1132 1 + . ID=CGI_10000495; scaffold1146 GLEAN mRNA 1133 1393 1 + . ID=CGI_10000495; scaffold1148 WUBlastX LTR_Copia 1484 1588 31 - . . scaffold1148 WUBlastX LTR_Gypsy 1529 1618 34 - . . scaffold1148 WUBlastX LTR_Gypsy 1840 3084 885 - . . scaffold1148 WUBlastX LTR_Gypsy 2188 3279 145 - . . scaffold1148 WUBlastX LINE_L2 33562 34227 79 - . . scaffold1148 WUBlastX LINE_L1 33601 34164 109 - . . scaffold1148 TRF Tandem_Repeat 47938 48058 113 + . . scaffold1148 TRF Tandem_Repeat 49892 49918 54 + . . scaffold1148 GLEAN mRNA 57234 80106 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 65530 65555 52 + . . scaffold1148 TRF Tandem_Repeat 70513 70885 369 + . . scaffold1148 TRF Tandem_Repeat 75951 76486 481 + . . scaffold1148 TRF Tandem_Repeat 75958 76466 295 + . . scaffold1148 TRF Tandem_Repeat 75958 76466 262 + . . scaffold1148 TRF Tandem_Repeat 75978 76486 517 + . . scaffold1148 TRF Tandem_Repeat 78010 78034 50 + . . scaffold1148 TRF Tandem_Repeat 79896 79932 74 + . . scaffold1148 GLEAN promoter 80107 81106 0.920529 - . ID=CGI_10008246; scaffold1148 TRF Tandem_Repeat 81341 81382 84 + . . scaffold1148 WUBlastX LINE_RTE-X 81890 82135 114 + . . scaffold1148 WUBlastX LINE_L2 82897 83271 76 + . . scaffold1148 TRF Tandem_Repeat 91956 92001 92 + . . scaffold1148 TRF Tandem_Repeat 93218 93259 84 + . . scaffold1148 GLEAN promoter 95581 96580 0.999985 + . ID=CGI_10008247; scaffold1148 GLEAN mRNA 96581 103364 0.999985 + . ID=CGI_10008247; scaffold1148 WUBlastX LINE_RTE-X 106430 106687 42 - . . scaffold1148 WUBlastX LINE_RTE-X 106562 106690 56 - . . scaffold1148 WUBlastX LINE_RTE-X 106562 106759 47 - . . scaffold1148 TRF Tandem_Repeat 128007 128174 178 + . . scaffold1148 TRF Tandem_Repeat 129057 129335 302 + . . scaffold1148 TRF Tandem_Repeat 129061 129335 258 + . . scaffold1148 GLEAN promoter 132463 133462 0.989295 + . ID=CGI_10008248; scaffold1148 GLEAN mRNA 133463 152871 0.989295 + . ID=CGI_10008248; scaffold1148 TRF Tandem_Repeat 134594 134660 134 + . . scaffold1148 TRF Tandem_Repeat 136784 136821 58 + . . scaffold1148 GLEAN promoter 157300 158299 0.858513 + . ID=CGI_10008249; scaffold1148 GLEAN mRNA 158300 165919 0.858513 + . ID=CGI_10008249; scaffold1148 WUBlastX DNA_TcMar-Tc1 160710 161027 76 - . . scaffold1148 WUBlastX DNA_TcMar-Tc1 161051 161644 218 - . . scaffold1148 WUBlastX DNA_TcMar-Tc1 161604 161711 35 - . . scaffold1148 TRF Tandem_Repeat 172339 172376 76 + . . scaffold1148 TRF Tandem_Repeat 172803 172845 68 + . . scaffold1148 WUBlastX LTR_Pao 176447 176902 34 + . . scaffold1148 WUBlastX LTR_Ngaro 177346 178839 372 + . . scaffold1148 WUBlastX LTR_Ngaro 177628 178881 881 + . . scaffold1148 WUBlastX LTR_Ngaro 179030 179896 193 + . . scaffold1148 TRF Tandem_Repeat 181105 182704 2116 + . . scaffold1148 TRF Tandem_Repeat 181110 181558 765 + . . scaffold1148 TRF Tandem_Repeat 181561 182704 1642 + . . scaffold1148 TRF Tandem_Repeat 186004 186046 56 + . . scaffold1149 WUBlastX LTR_DIRS 40 558 121 + . . scaffold1149 WUBlastX LTR_DIRS? 584 640 46 + . . scaffold1149 WUBlastX LTR_DIRS 584 679 43 + . . scaffold1149 GLEAN mRNA 5055 11754 0.981658 - . ID=CGI_10023443; scaffold1149 TRF Tandem_Repeat 7761 8104 566 + . . scaffold1149 TRF Tandem_Repeat 8861 8992 228 + . . scaffold1149 GLEAN promoter 11755 12754 0.981658 - . ID=CGI_10023443; scaffold1149 GLEAN promoter 13063 14062 0.99999 + . ID=CGI_10023444; scaffold1149 GLEAN mRNA 14063 19035 0.99999 + . ID=CGI_10023444; scaffold1149 TRF Tandem_Repeat 14907 14965 118 + . . scaffold1149 TRF Tandem_Repeat 15233 15283 102 + . . scaffold1149 TRF Tandem_Repeat 19391 20085 1011 + . . scaffold1149 TRF Tandem_Repeat 19391 20085 1011 + . . scaffold1149 TRF Tandem_Repeat 19391 19810 652 + . . scaffold1149 TRF Tandem_Repeat 20400 20937 481 + . . scaffold1149 TRF Tandem_Repeat 20400 20741 434 + . . scaffold1149 GLEAN promoter 20776 21775 1 + . ID=CGI_10023445; scaffold1149 GLEAN mRNA 21776 24865 1 + . ID=CGI_10023445; scaffold1149 GLEAN mRNA 29919 31610 0.725879 - . ID=CGI_10023446; scaffold1149 TRF Tandem_Repeat 30652 31031 598 + . . scaffold1149 GLEAN promoter 31611 32610 0.725879 - . ID=CGI_10023446; scaffold1149 GLEAN promoter 35464 36463 0.42199 + . ID=CGI_10023447; scaffold1149 GLEAN mRNA 36464 66919 0.42199 + . ID=CGI_10023447; scaffold1149 WUBlastX LINE_Penelope 39439 39978 69 + . . scaffold1149 WUBlastX LINE_Penelope 39706 39978 73 + . . scaffold1149 TRF Tandem_Repeat 45244 45281 58 + . . scaffold1149 TRF Tandem_Repeat 51953 52572 925 + . . scaffold1149 GLEAN mRNA 68151 72031 0.819678 - . ID=CGI_10023448; scaffold1149 GLEAN promoter 72032 73031 0.819678 - . ID=CGI_10023448; scaffold1149 GLEAN promoter 78064 79063 0.581825 + . ID=CGI_10023449; scaffold1149 GLEAN mRNA 79064 81537 0.581825 + . ID=CGI_10023449; scaffold1149 GLEAN mRNA 84834 85792 0.593391 - . ID=CGI_10023450; scaffold1149 WUBlastX LINE_L2 85514 85774 24 - . . scaffold1149 GLEAN promoter 85793 86792 0.593391 - . ID=CGI_10023450; scaffold1149 WUBlastX RC_Helitron 85961 86386 50 - . . scaffold1149 WUBlastX RC_Helitron 85967 86179 55 - . . scaffold1149 WUBlastX RC_Helitron 86419 88557 1137 - . . scaffold1149 WUBlastX RC_Helitron 88510 88596 20 - . . scaffold1149 WUBlastX RC_Helitron 88635 88934 47 - . . scaffold1149 WUBlastX RC_Helitron 88698 88934 62 - . . scaffold1149 WUBlastX RC_Helitron 88913 89554 476 - . . scaffold1149 WUBlastX RC_Helitron 89547 89774 196 - . . scaffold1149 WUBlastX RC_Helitron 89779 91023 818 - . . scaffold1149 WUBlastX RC_Helitron 89803 91512 460 - . . scaffold1149 WUBlastX RC_Helitron 91569 92111 144 - . . scaffold1149 GLEAN promoter 97254 98253 0.593303 + . ID=CGI_10023451; scaffold1149 GLEAN mRNA 98254 99745 0.593303 + . ID=CGI_10023451; scaffold1149 WUBlastX LTR_Ngaro 102025 102357 73 + . . scaffold1149 WUBlastX LTR_Ngaro 102025 102441 63 + . . scaffold1149 WUBlastX LTR_Ngaro 102451 102603 52 + . . scaffold1149 WUBlastX LINE_L1-Tx1 119352 123152 1805 + . . scaffold1149 GLEAN promoter 122566 123565 0.531581 + . ID=CGI_10023452; scaffold1149 GLEAN mRNA 123566 144809 0.531581 + . ID=CGI_10023452; scaffold1149 WUBlastX LTR_Ngaro 126468 126659 53 + . . scaffold1149 WUBlastX LTR_Ngaro 126480 126605 58 + . . scaffold1149 WUBlastX LTR_Ngaro 126626 126865 78 + . . scaffold1149 WUBlastX LTR_Ngaro 126659 126955 27 + . . scaffold1149 TRF Tandem_Repeat 132281 132354 85 + . . scaffold1149 WUBlastX DNA_TcMar-Marin 138389 138577 63 + . . scaffold1149 TRF Tandem_Repeat 146278 146335 107 + . . scaffold1149 GLEAN promoter 148088 149087 0.31262 + . ID=CGI_10023454; scaffold1149 GLEAN mRNA 149088 177869 0.31262 + . ID=CGI_10023454; scaffold1149 GLEAN mRNA 159761 160426 0.740463 - . ID=CGI_10023455; scaffold1149 GLEAN promoter 160427 161426 0.740463 - . ID=CGI_10023455; scaffold1149 WUBlastX LINE_RTE-X 164412 164639 77 + . . scaffold1149 WUBlastX LINE_RTE-X 164650 164793 40 + . . scaffold1149 WUBlastX LINE_RTE-X 164943 165398 83 + . . scaffold1149 GLEAN mRNA 169434 170103 0.999716 - . ID=CGI_10023456; scaffold1149 GLEAN promoter 170104 171103 0.999716 - . ID=CGI_10023456; scaffold1149 GLEAN mRNA 171573 177917 0.499791 - . ID=CGI_10023457; scaffold1149 TRF Tandem_Repeat 177280 177412 106 + . . scaffold1149 TRF Tandem_Repeat 177280 177527 117 + . . scaffold1149 TRF Tandem_Repeat 177436 177531 165 + . . scaffold1149 TRF Tandem_Repeat 177436 177693 262 + . . scaffold1149 GLEAN promoter 177918 178917 0.499791 - . ID=CGI_10023457; scaffold1149 GLEAN promoter 188419 189418 0.650722 + . ID=CGI_10023458; scaffold1149 GLEAN mRNA 189419 201625 0.650722 + . ID=CGI_10023458; scaffold1149 GLEAN mRNA 189720 196883 0.999675 - . ID=CGI_10023459; scaffold1149 GLEAN promoter 196884 197883 0.999675 - . ID=CGI_10023459; scaffold1149 WUBlastX LINE_CR1-L2 210774 211346 138 + . . scaffold1149 WUBlastX LINE_L2 210894 211352 240 + . . scaffold1149 WUBlastX LINE_L2 211354 212286 284 + . . scaffold1149 WUBlastX LINE_L2 212228 213037 579 + . . scaffold1149 WUBlastX LINE_L2 213018 214025 482 + . . scaffold1149 GLEAN mRNA 215463 220751 0.999395 - . ID=CGI_10023460; scaffold1149 WUBlastX LINE_RTE-X 217415 218347 352 - . . scaffold1149 WUBlastX LINE_RTE-X 218381 218659 53 + . . scaffold1149 WUBlastX LINE_RTE-X 218465 219424 354 + . . scaffold1149 WUBlastX DNA_hAT-Ac 219947 220219 67 + . . scaffold1149 WUBlastX DNA_hAT-Ac 220052 220396 48 + . . scaffold1149 WUBlastX DNA_hAT-Ac 220073 220261 72 + . . scaffold1149 GLEAN promoter 220752 221751 0.999395 - . ID=CGI_10023460; scaffold1149 TRF Tandem_Repeat 220812 220855 88 + . . scaffold1149 TRF Tandem_Repeat 221937 221984 96 + . . scaffold1149 WUBlastX LINE_L2 225669 226391 428 + . . scaffold1149 WUBlastX LINE_L2 226417 226698 80 + . . scaffold1149 GLEAN mRNA 228721 229983 0.531615 - . ID=CGI_10023461; scaffold1149 GLEAN promoter 229984 230983 0.531615 - . ID=CGI_10023461; scaffold1149 GLEAN promoter 230254 231253 0.507658 + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 230996 231037 84 + . . scaffold1149 GLEAN mRNA 231254 271705 0.507658 + . ID=CGI_10023462; scaffold1149 TRF Tandem_Repeat 231476 231510 70 + . . scaffold1149 TRF Tandem_Repeat 252573 252602 53 + . . scaffold1149 TRF Tandem_Repeat 254856 254937 164 + . . scaffold1149 TRF Tandem_Repeat 255446 255476 55 + . . scaffold1149 TRF Tandem_Repeat 256086 256130 90 + . . scaffold1149 TRF Tandem_Repeat 262654 262727 148 + . . scaffold1149 GLEAN mRNA 272654 284899 1 - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 274255 274292 76 + . . scaffold1149 TRF Tandem_Repeat 276725 277539 1026 + . . scaffold1149 TRF Tandem_Repeat 277709 277746 51 + . . scaffold1149 TRF Tandem_Repeat 278811 278922 206 + . . scaffold1149 TRF Tandem_Repeat 281539 281588 66 + . . scaffold1149 TRF Tandem_Repeat 281539 281588 75 + . . scaffold1149 GLEAN promoter 284900 285899 1 - . ID=CGI_10023463; scaffold1149 TRF Tandem_Repeat 285069 285102 68 + . . scaffold1149 TRF Tandem_Repeat 303431 303487 52 + . . scaffold1149 TRF Tandem_Repeat 318086 318110 50 + . . scaffold1149 WUBlastX LTR_Gypsy 342300 342560 115 - . . scaffold1149 WUBlastX LTR_Gypsy 342351 342599 120 - . . scaffold1149 WUBlastX LTR_Gypsy 342351 342692 37 - . . scaffold1149 WUBlastX LTR_Gypsy 342354 342551 169 - . . scaffold1149 WUBlastX LTR_Gypsy 342808 343188 178 - . . scaffold1149 WUBlastX LTR_Gypsy 342871 343188 234 - . . scaffold1149 TRF Tandem_Repeat 352026 352223 333 + . . scaffold1149 TRF Tandem_Repeat 352905 352957 61 + . . scaffold1149 TRF Tandem_Repeat 355757 355823 134 + . . scaffold1149 WUBlastX LTR_Pao 359712 359930 65 - . . scaffold1149 WUBlastX LTR_Pao 359966 360718 276 - . . scaffold1149 WUBlastX LTR_Pao 360395 360778 46 - . . scaffold1149 WUBlastX LTR_Pao 360756 361160 30 - . . scaffold1149 WUBlastX LTR_Pao 360918 361409 32 - . . scaffold1149 GLEAN promoter 365279 366278 0.999765 + . ID=CGI_10023464; scaffold1149 GLEAN mRNA 366279 368482 0.999765 + . ID=CGI_10023464; scaffold1149 TRF Tandem_Repeat 369706 369751 60 + . . scaffold1149 GLEAN mRNA 370735 423206 0.330357 - . ID=CGI_10023465; scaffold1149 TRF Tandem_Repeat 371472 371522 52 + . . scaffold1149 TRF Tandem_Repeat 374596 374649 90 + . . scaffold1149 TRF Tandem_Repeat 379385 379430 92 + . . scaffold1149 TRF Tandem_Repeat 381502 381550 62 + . . scaffold1149 TRF Tandem_Repeat 381550 381592 86 + . . scaffold1149 TRF Tandem_Repeat 395813 395930 75 + . . scaffold1149 TRF Tandem_Repeat 395864 395986 88 + . . scaffold1149 GLEAN promoter 423207 424206 0.330357 - . ID=CGI_10023465; scaffold1149 GLEAN mRNA 424373 436919 0.962679 - . ID=CGI_10023466; scaffold1149 TRF Tandem_Repeat 436163 436220 116 + . . scaffold1149 TRF Tandem_Repeat 436600 436649 75 + . . scaffold1149 GLEAN promoter 436920 437919 0.962679 - . ID=CGI_10023466; scaffold1149 TRF Tandem_Repeat 447179 447212 52 + . . scaffold1149 WUBlastX LTR_Gypsy 452381 452809 39 - . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 452489 453823 795 - . . scaffold1149 WUBlastX LTR_Gypsy 452516 454513 487 - . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 454488 455750 912 - . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 455631 455783 32 - . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 457409 457942 24 - . . scaffold1149 WUBlastX LTR_Gypsy 457562 457828 48 - . . scaffold1149 WUBlastX LTR_Gypsy-Cigr 458433 458879 141 - . . scaffold1149 TRF Tandem_Repeat 465771 465891 120 + . . scaffold1149 TRF Tandem_Repeat 469873 469922 66 + . . scaffold1149 TRF Tandem_Repeat 482695 482739 90 + . . scaffold1149 TRF Tandem_Repeat 483227 483263 74 + . . scaffold1149 TRF Tandem_Repeat 484277 484493 197 + . . scaffold1149 TRF Tandem_Repeat 488049 488086 76 + . . scaffold1149 TRF Tandem_Repeat 490381 490464 61 + . . scaffold1149 TRF Tandem_Repeat 490388 490464 62 + . . scaffold1149 TRF Tandem_Repeat 490389 490457 63 + . . scaffold1149 TRF Tandem_Repeat 490405 490463 64 + . . scaffold1149 GLEAN promoter 493232 494231 0.557182 + . ID=CGI_10023468; scaffold1149 GLEAN mRNA 494232 495588 0.557182 + . ID=CGI_10023468; scaffold1149 GLEAN mRNA 498750 520390 0.999675 - . ID=CGI_10023469; scaffold1149 TRF Tandem_Repeat 509573 509637 85 + . . scaffold1149 GLEAN promoter 520391 521390 0.999675 - . ID=CGI_10023469; scaffold1149 TRF Tandem_Repeat 520529 520588 111 + . . scaffold1149 GLEAN mRNA 520704 525783 1 - . ID=CGI_10023470; scaffold1149 TRF Tandem_Repeat 522867 524103 1557 + . . scaffold1149 GLEAN promoter 525784 526783 1 - . ID=CGI_10023470; scaffold1149 GLEAN mRNA 526210 533311 0.98826 - . ID=CGI_10023471; scaffold1149 TRF Tandem_Repeat 528353 528469 101 + . . scaffold1149 TRF Tandem_Repeat 528369 528470 131 + . . scaffold1149 TRF Tandem_Repeat 532412 532728 203 + . . scaffold1149 TRF Tandem_Repeat 532427 532728 186 + . . scaffold1149 GLEAN promoter 533312 534311 0.98826 - . ID=CGI_10023471; scaffold1149 TRF Tandem_Repeat 537437 537804 101 + . . scaffold1149 GLEAN mRNA 538198 538452 1 - . ID=CGI_10023472; scaffold1149 TRF Tandem_Repeat 538346 538579 362 + . . scaffold1149 TRF Tandem_Repeat 538377 538554 76 + . . scaffold1149 GLEAN promoter 538453 539452 1 - . ID=CGI_10023472; scaffold1149 WUBlastX LINE_RTE-X 540497 540814 31 + . . scaffold1149 WUBlastX LINE_RTE-X 540823 541038 51 + . . scaffold1149 GLEAN mRNA 542856 548315 0.999675 - . ID=CGI_10023473; scaffold1149 WUBlastX DNA_Harbinger 548196 548333 47 - . . scaffold1149 GLEAN promoter 548316 549315 0.999675 - . ID=CGI_10023473; scaffold1149 WUBlastX LINE_RTE-BovB 554126 554581 116 + . . scaffold1149 WUBlastX LINE_RTE-X 557529 558092 104 + . . scaffold1149 WUBlastX LINE_RTE-X 558094 558141 21 + . . scaffold1149 WUBlastX LINE_Proto2 560090 560776 75 + . . scaffold1149 WUBlastX LINE_I-Nimb 560195 561142 37 + . . scaffold1149 WUBlastX LINE_CR1 561041 561331 27 + . . scaffold1149 WUBlastX LINE_L1-Tx1 561094 561264 37 + . . scaffold1149 WUBlastX LINE_L1 561457 561669 37 + . . scaffold1149 WUBlastX LINE_RTE-X 561633 562631 234 + . . scaffold1149 WUBlastX LINE_L2 561666 562829 68 + . . scaffold1149 WUBlastX LINE_I 562748 562891 29 + . . scaffold1149 WUBlastX RC_Helitron 583450 585594 1010 - . . scaffold1149 WUBlastX RC_Helitron 585612 588923 1878 - . . scaffold1149 TRF Tandem_Repeat 588926 589542 593 + . . scaffold1149 WUBlastX RC_Helitron 589575 590333 82 - . . scaffold1149 WUBlastX RC_Helitron 589719 590333 123 - . . scaffold1149 TRF Tandem_Repeat 590418 590541 194 + . . scaffold1149 WUBlastX DNA_Kolobok-IS4 596462 597121 437 + . . scaffold1149 WUBlastX DNA_IS4EU 597672 598823 294 - . . scaffold1149 WUBlastX DNA_Kolobok-IS4 599141 599668 81 - . . scaffold1149 WUBlastX DNA_IS4EU 599141 599503 120 - . . scaffold1149 GLEAN mRNA 601525 602747 0.935953 - . ID=CGI_10023474; scaffold1149 GLEAN promoter 602748 603747 0.935953 - . ID=CGI_10023474; scaffold1149 TRF Tandem_Repeat 604584 604630 94 + . . scaffold1149 WUBlastX DNA_TcMar-Tc1 605542 605766 34 + . . scaffold1149 WUBlastX DNA_TcMar-Tc1 605542 605730 85 + . . scaffold1149 WUBlastX LTR_Gypsy 605886 606179 73 + . . scaffold1149 WUBlastX LTR_Gypsy 605964 606152 139 + . . scaffold1149 WUBlastX LTR_Gypsy-Gmr1 605994 606185 86 + . . scaffold1149 TRF Tandem_Repeat 610223 610257 52 + . . scaffold1149 GLEAN mRNA 611154 612499 0.997377 - . ID=CGI_10023475; scaffold1149 GLEAN promoter 612500 613499 0.997377 - . ID=CGI_10023475; scaffold1149 TRF Tandem_Repeat 613373 613426 99 + . . scaffold1149 WUBlastX LINE_RTE-X 619013 619333 77 + . . scaffold1149 WUBlastX LINE_RTE-X 619339 619596 71 + . . scaffold1149 WUBlastX LINE_RTE-X 619339 619527 104 + . . scaffold1149 WUBlastX LINE_RTE-X 619488 619685 28 + . . scaffold1149 GLEAN promoter 624319 625318 0.552538 + . ID=CGI_10023476; scaffold1149 GLEAN mRNA 625319 651164 0.552538 + . ID=CGI_10023476; scaffold1149 TRF Tandem_Repeat 636857 636886 51 + . . scaffold1149 GLEAN mRNA 656535 664051 0.548596 - . ID=CGI_10023477; scaffold1149 GLEAN promoter 664052 665051 0.548596 - . ID=CGI_10023477; scaffold1149 TRF Tandem_Repeat 667813 667853 82 + . . scaffold1149 WUBlastX DNA_TcMar-Tc1 674173 674529 60 + . . scaffold1149 WUBlastX DNA_TcMar-Tc1 674475 674612 23 + . . scaffold1149 WUBlastX DNA_TcMar-Tc1 674608 674772 43 + . . scaffold1149 WUBlastX LINE_Penelope 675131 675418 24 + . . scaffold1149 WUBlastX DNA_TcMar-Tc1 679045 679587 355 - . . scaffold1149 WUBlastX DNA_TcMar-Tc1 679593 679976 170 - . . scaffold1149 TRF Tandem_Repeat 689978 690017 80 + . . scaffold1149 TRF Tandem_Repeat 690134 690187 94 + . . scaffold1149 TRF Tandem_Repeat 697407 697456 91 + . . scaffold1149 TRF Tandem_Repeat 704417 704455 78 + . . scaffold1149 GLEAN promoter 705264 706263 0.605293 + . ID=CGI_10023478; scaffold1149 GLEAN mRNA 706264 722133 0.605293 + . ID=CGI_10023478; scaffold1149 WUBlastX LINE_RTE-BovB 707622 708818 1036 - . . scaffold1149 TRF Tandem_Repeat 723080 723122 50 + . . scaffold1149 TRF Tandem_Repeat 742647 742701 101 + . . scaffold1149 TRF Tandem_Repeat 752400 752455 53 + . . scaffold1149 TRF Tandem_Repeat 752402 752456 64 + . . scaffold1149 TRF Tandem_Repeat 756456 756493 76 + . . scaffold1149 WUBlastX LTR_Gypsy 762978 763043 23 + . . scaffold1149 WUBlastX LTR_Gypsy 763111 763305 22 + . . scaffold1149 WUBlastX LTR_Gypsy 763147 763326 66 + . . scaffold1149 WUBlastX LTR_Gypsy 763284 764174 805 + . . scaffold1149 TRF Tandem_Repeat 802481 802506 52 + . . scaffold1149 TRF Tandem_Repeat 803270 803332 83 + . . scaffold1149 TRF Tandem_Repeat 811181 811260 142 + . . scaffold1149 WUBlastX LINE_L2 826746 827189 48 + . . scaffold1149 WUBlastX DNA_Kolobok-IS4 833414 833695 80 + . . scaffold1149 TRF Tandem_Repeat 834136 834356 361 + . . scaffold1149 WUBlastX DNA_IS4EU 837481 838212 83 - . . scaffold1149 WUBlastX DNA_IS4EU 838385 838900 94 - . . scaffold1149 WUBlastX LINE_RTE-BovB 843528 843620 52 + . . scaffold115 GLEAN mRNA 1222 6754 1 - . ID=CGI_10021368; scaffold115 GLEAN promoter 6755 7754 1 - . ID=CGI_10021368; scaffold115 GLEAN promoter 6809 7808 1 + . ID=CGI_10021370; scaffold115 GLEAN mRNA 7779 20222 0.99988 - . ID=CGI_10021369; scaffold115 GLEAN mRNA 7809 19509 1 + . ID=CGI_10021370; scaffold115 TRF Tandem_Repeat 8144 8191 87 + . . scaffold115 GLEAN promoter 20223 21222 0.99988 - . ID=CGI_10021369; scaffold115 TRF Tandem_Repeat 22992 23053 124 + . . scaffold115 GLEAN mRNA 25110 37138 0.612228 - . ID=CGI_10021371; scaffold115 TRF Tandem_Repeat 26034 26060 54 + . . scaffold115 TRF Tandem_Repeat 31843 31875 50 + . . scaffold115 GLEAN promoter 37139 38138 0.612228 - . ID=CGI_10021371; scaffold115 GLEAN mRNA 38948 41651 0.820164 - . ID=CGI_10021372; scaffold115 TRF Tandem_Repeat 41020 41066 94 + . . scaffold115 GLEAN promoter 41652 42651 0.820164 - . ID=CGI_10021372; scaffold115 GLEAN promoter 42531 43530 1 + . ID=CGI_10021373; scaffold115 GLEAN mRNA 43531 45655 1 + . ID=CGI_10021373; scaffold115 GLEAN mRNA 46642 52349 0.966032 - . ID=CGI_10021374; scaffold115 TRF Tandem_Repeat 47222 47289 127 + . . scaffold115 GLEAN promoter 50116 51115 0.99855 + . ID=CGI_10021375; scaffold115 GLEAN mRNA 51116 63970 0.99855 + . ID=CGI_10021375; scaffold115 GLEAN promoter 52350 53349 0.966032 - . ID=CGI_10021374; scaffold115 TRF Tandem_Repeat 65130 65187 116 + . . scaffold115 TRF Tandem_Repeat 66621 66653 66 + . . scaffold115 GLEAN mRNA 71442 84618 0.893404 - . ID=CGI_10021376; scaffold115 GLEAN promoter 84619 85618 0.893404 - . ID=CGI_10021376; scaffold115 TRF Tandem_Repeat 100459 101201 976 + . . scaffold115 GLEAN promoter 104863 105862 0.999676 + . ID=CGI_10021377; scaffold115 GLEAN mRNA 105863 111144 0.999676 + . ID=CGI_10021377; scaffold115 TRF Tandem_Repeat 112961 112994 68 + . . scaffold115 TRF Tandem_Repeat 113574 113640 71 + . . scaffold115 WUBlastX LINE_L1-Tx1 123419 124126 102 + . . scaffold115 WUBlastX DNA_IS4EU 124597 125247 39 + . . scaffold115 WUBlastX DNA_IS4EU 124696 125511 66 + . . scaffold115 WUBlastX DNA_IS4EU 124981 125526 127 + . . scaffold115 GLEAN mRNA 126783 131612 1 - . ID=CGI_10021378; scaffold115 WUBlastX DNA_hAT-Tip100 129382 129834 79 + . . scaffold115 WUBlastX DNA_hAT-Tip100 129499 129840 94 + . . scaffold115 WUBlastX LINE_RTE-X 129845 130600 159 - . . scaffold115 WUBlastX LINE_L1 130639 131175 65 - . . scaffold115 WUBlastX LINE_L1 130720 131259 224 - . . scaffold115 GLEAN promoter 131613 132612 1 - . ID=CGI_10021378; scaffold115 TRF Tandem_Repeat 133230 135484 2426 + . . scaffold115 WUBlastX DNA_NOF 142697 142975 34 - . . scaffold115 WUBlastX DNA_NOF 144970 145362 68 - . . scaffold115 WUBlastX DNA_NOF 145566 146387 223 - . . scaffold115 WUBlastX DNA_NOF 146464 147090 29 - . . scaffold115 TRF Tandem_Repeat 148536 149391 1109 + . . scaffold115 TRF Tandem_Repeat 154005 154259 316 + . . scaffold115 GLEAN promoter 154770 155769 0.999661 + . ID=CGI_10021379; scaffold115 GLEAN mRNA 155770 157416 0.999661 + . ID=CGI_10021379; scaffold115 GLEAN promoter 160918 161917 0.992234 + . ID=CGI_10021380; scaffold115 GLEAN mRNA 161918 164254 0.992234 + . ID=CGI_10021380; scaffold115 GLEAN promoter 168162 169161 1 + . ID=CGI_10021381; scaffold115 GLEAN mRNA 169162 169774 1 + . ID=CGI_10021381; scaffold115 TRF Tandem_Repeat 171769 171814 83 + . . scaffold115 TRF Tandem_Repeat 172081 172200 240 + . . scaffold115 TRF Tandem_Repeat 172427 172474 60 + . . scaffold115 WUBlastX LINE_L1-Tx1 173133 173384 87 + . . scaffold115 WUBlastX LINE_L1-Tx1 173217 173372 89 + . . scaffold115 TRF Tandem_Repeat 175096 175144 98 + . . scaffold115 WUBlastX LINE_RTE-X 176634 176696 20 + . . scaffold115 WUBlastX LINE_RTE-X 176710 176949 53 + . . scaffold115 WUBlastX LINE_RTE-X 176743 176868 58 + . . scaffold115 WUBlastX LINE_RTE-X 176904 176969 37 + . . scaffold115 GLEAN promoter 178140 179139 1 + . ID=CGI_10021382; scaffold115 TRF Tandem_Repeat 178384 178975 630 + . . scaffold115 GLEAN mRNA 179140 180261 1 + . ID=CGI_10021382; scaffold115 WUBlastX LINE_CR1-L2 181502 181651 84 + . . scaffold115 GLEAN promoter 183007 184006 0.994579 + . ID=CGI_10021383; scaffold115 GLEAN mRNA 184007 188317 0.994579 + . ID=CGI_10021383; scaffold115 TRF Tandem_Repeat 187235 187307 110 + . . scaffold115 WUBlastX LINE_RTE-BovB 187695 187859 133 + . . scaffold115 TRF Tandem_Repeat 188060 188087 56 + . . scaffold115 GLEAN promoter 188168 189167 0.994589 + . ID=CGI_10021384; scaffold115 TRF Tandem_Repeat 188819 188912 125 + . . scaffold115 GLEAN mRNA 189168 190316 0.994589 + . ID=CGI_10021384; scaffold115 TRF Tandem_Repeat 191035 191088 99 + . . scaffold115 TRF Tandem_Repeat 191258 192447 1919 + . . scaffold115 GLEAN mRNA 221443 221901 0.412716 - . ID=CGI_10021385; scaffold115 GLEAN promoter 221902 222901 0.412716 - . ID=CGI_10021385; scaffold115 GLEAN mRNA 222020 222583 0.593386 - . ID=CGI_10021386; scaffold115 GLEAN promoter 222584 223583 0.593386 - . ID=CGI_10021386; scaffold115 GLEAN mRNA 230298 234481 0.999998 - . ID=CGI_10021387; scaffold115 GLEAN promoter 234482 235481 0.999998 - . ID=CGI_10021387; scaffold115 WUBlastX LINE_RTE-X 242793 243011 30 + . . scaffold115 WUBlastX LINE_RTE-X 243815 244186 95 + . . scaffold115 WUBlastX LINE_RTE-X 243938 244180 101 + . . scaffold115 WUBlastX LINE_RTE-X 243944 244249 78 + . . scaffold115 TRF Tandem_Repeat 246257 246364 110 + . . scaffold115 TRF Tandem_Repeat 246270 246364 111 + . . scaffold115 TRF Tandem_Repeat 246866 246913 60 + . . scaffold115 TRF Tandem_Repeat 246932 246997 69 + . . scaffold115 TRF Tandem_Repeat 246932 247063 90 + . . scaffold115 TRF Tandem_Repeat 247595 247642 96 + . . scaffold115 TRF Tandem_Repeat 249409 249533 73 + . . scaffold115 GLEAN mRNA 256519 257613 0.64255 - . ID=CGI_10021388; scaffold115 GLEAN promoter 257614 258613 0.64255 - . ID=CGI_10021388; scaffold115 TRF Tandem_Repeat 260809 260859 95 + . . scaffold115 TRF Tandem_Repeat 265190 265237 87 + . . scaffold115 TRF Tandem_Repeat 269148 269181 50 + . . scaffold115 TRF Tandem_Repeat 269986 270020 61 + . . scaffold115 WUBlastX DNA_IS4EU 274236 274586 57 + . . scaffold115 WUBlastX DNA_IS4EU 274978 275298 47 + . . scaffold115 WUBlastX DNA_IS4EU 275565 275822 29 - . . scaffold115 TRF Tandem_Repeat 277072 277107 63 + . . scaffold115 WUBlastX LINE_RTE-X 281075 281587 94 + . . scaffold115 WUBlastX LINE_RTE-X 281084 281698 76 + . . scaffold115 WUBlastX LINE_RTE-X 281087 281857 32 + . . scaffold115 WUBlastX LINE_L2 282735 283706 299 - . . scaffold115 GLEAN mRNA 295284 296891 0.448271 - . ID=CGI_10021389; scaffold115 GLEAN promoter 296892 297891 0.448271 - . ID=CGI_10021389; scaffold115 TRF Tandem_Repeat 298034 298080 85 + . . scaffold115 WUBlastX LINE_L2 299762 300661 334 - . . scaffold115 WUBlastX LINE_L2 300059 300769 98 - . . scaffold115 TRF Tandem_Repeat 302075 302147 110 + . . scaffold115 TRF Tandem_Repeat 305145 305210 116 + . . scaffold115 TRF Tandem_Repeat 310840 310886 94 + . . scaffold115 GLEAN promoter 311271 312270 1 + . ID=CGI_10021390; scaffold115 GLEAN mRNA 312271 314031 1 + . ID=CGI_10021390; scaffold115 TRF Tandem_Repeat 314521 314785 439 + . . scaffold115 WUBlastX DNA_IS4EU 323963 324166 63 - . . scaffold115 WUBlastX DNA_IS4EU 323966 324106 76 - . . scaffold115 WUBlastX DNA_IS4EU 324293 324466 33 - . . scaffold115 WUBlastX DNA_Kolobok-IS4 324320 324493 29 - . . scaffold115 WUBlastX DNA_IS4EU 324320 324391 42 - . . scaffold115 WUBlastX DNA_IS4EU 324644 324799 27 - . . scaffold115 WUBlastX DNA_IS4EU 324927 325010 53 - . . scaffold115 WUBlastX DNA_IS4EU 324927 325025 30 - . . scaffold115 WUBlastX DNA_IS4EU 325139 325243 50 - . . scaffold115 WUBlastX DNA_Kolobok-IS4 325142 325267 29 - . . scaffold115 TRF Tandem_Repeat 330114 330158 90 + . . scaffold115 WUBlastX LTR_DIRS 358595 358966 135 - . . scaffold115 WUBlastX LTR_DIRS 358598 359218 131 - . . scaffold115 WUBlastX LTR_DIRS 358706 358969 147 - . . scaffold115 WUBlastX LTR_DIRS 359454 359573 37 - . . scaffold115 WUBlastX LTR_DIRS 359551 359613 24 - . . scaffold115 WUBlastX LTR_DIRS 359612 359710 27 - . . scaffold115 WUBlastX LTR_DIRS 369556 369714 23 - . . scaffold115 WUBlastX LTR_DIRS 369586 369714 34 - . . scaffold115 WUBlastX LTR_DIRS 369720 370220 38 - . . scaffold115 WUBlastX LTR_DIRS 369720 370103 116 - . . scaffold115 WUBlastX LTR_DIRS 376292 376330 26 + . . scaffold115 WUBlastX LTR_DIRS 376395 376604 34 + . . scaffold115 WUBlastX LTR_DIRS 376404 376541 57 + . . scaffold115 WUBlastX LTR_DIRS 377030 377371 85 + . . scaffold115 WUBlastX DNA_PiggyBac 378278 378508 46 - . . scaffold115 WUBlastX DNA_PiggyBac 380074 380397 42 - . . scaffold115 WUBlastX DNA_PiggyBac 380215 380397 68 - . . scaffold115 WUBlastX DNA_PiggyBac 380732 380875 48 - . . scaffold115 WUBlastX DNA_PiggyBac 381279 381626 58 - . . scaffold115 WUBlastX DNA_PiggyBac 381357 381581 111 - . . scaffold115 WUBlastX DNA_PiggyBac 381360 381632 62 - . . scaffold115 WUBlastX DNA_PiggyBac 381381 381779 23 - . . scaffold115 TRF Tandem_Repeat 385846 385923 147 + . . scaffold115 TRF Tandem_Repeat 388466 388559 170 + . . scaffold115 GLEAN mRNA 394752 406446 0.999351 - . ID=CGI_10021391; scaffold115 GLEAN promoter 406447 407446 0.999351 - . ID=CGI_10021391; scaffold115 GLEAN mRNA 406502 409330 0.999605 - . ID=CGI_10021392; scaffold115 GLEAN promoter 409331 410330 0.999605 - . ID=CGI_10021392; scaffold115 GLEAN mRNA 410134 417170 0.840078 - . ID=CGI_10021393; scaffold115 GLEAN promoter 417171 418170 0.840078 - . ID=CGI_10021393; scaffold115 TRF Tandem_Repeat 422151 422203 99 + . . scaffold115 TRF Tandem_Repeat 422153 422210 62 + . . scaffold115 TRF Tandem_Repeat 423259 423311 106 + . . scaffold115 GLEAN mRNA 434649 440030 0.999947 - . ID=CGI_10021394; scaffold115 TRF Tandem_Repeat 437775 437814 80 + . . scaffold115 TRF Tandem_Repeat 439163 439208 92 + . . scaffold115 GLEAN promoter 440031 441030 0.999947 - . ID=CGI_10021394; scaffold115 TRF Tandem_Repeat 445555 445596 84 + . . scaffold115 TRF Tandem_Repeat 445623 445700 156 + . . scaffold115 GLEAN mRNA 447655 447888 0.999995 - . ID=CGI_10021395; scaffold115 GLEAN promoter 447889 448888 0.999995 - . ID=CGI_10021395; scaffold115 TRF Tandem_Repeat 453418 453471 74 + . . scaffold115 GLEAN mRNA 454742 454966 0.995355 - . ID=CGI_10021396; scaffold115 GLEAN promoter 454967 455966 0.995355 - . ID=CGI_10021396; scaffold115 WUBlastX LINE_Penelope 459375 459629 55 + . . scaffold115 WUBlastX LINE_Penelope 459456 459740 30 + . . scaffold115 WUBlastX LINE_Penelope 459614 459781 30 + . . scaffold115 GLEAN mRNA 462311 468809 1 - . ID=CGI_10021397; scaffold115 GLEAN promoter 468810 469809 1 - . ID=CGI_10021397; scaffold115 GLEAN promoter 468893 469892 1 + . ID=CGI_10021398; scaffold115 GLEAN mRNA 469893 480527 1 + . ID=CGI_10021398; scaffold115 TRF Tandem_Repeat 475048 475089 84 + . . scaffold115 TRF Tandem_Repeat 479916 480094 243 + . . scaffold115 GLEAN mRNA 484155 489093 1 - . ID=CGI_10021399; scaffold115 TRF Tandem_Repeat 488016 488058 86 + . . scaffold115 TRF Tandem_Repeat 488517 488562 92 + . . scaffold115 GLEAN promoter 489094 490093 1 - . ID=CGI_10021399; scaffold115 TRF Tandem_Repeat 489126 489973 1471 + . . scaffold115 GLEAN mRNA 490055 497744 0.986378 - . ID=CGI_10021400; scaffold115 TRF Tandem_Repeat 490269 490894 379 + . . scaffold115 GLEAN promoter 497196 498195 1 + . ID=CGI_10021401; scaffold115 GLEAN promoter 497745 498744 0.986378 - . ID=CGI_10021400; scaffold115 GLEAN mRNA 498196 500696 1 + . ID=CGI_10021401; scaffold115 GLEAN mRNA 502112 526649 0.992094 - . ID=CGI_10021402; scaffold115 TRF Tandem_Repeat 508742 509207 359 + . . scaffold115 TRF Tandem_Repeat 512636 512683 78 + . . scaffold115 TRF Tandem_Repeat 513900 514941 1467 + . . scaffold115 TRF Tandem_Repeat 513923 514941 1320 + . . scaffold115 TRF Tandem_Repeat 524479 524735 381 + . . scaffold115 GLEAN promoter 526650 527649 0.992094 - . ID=CGI_10021402; scaffold115 TRF Tandem_Repeat 529099 529155 60 + . . scaffold115 GLEAN promoter 530743 531742 0.997171 + . ID=CGI_10021403; scaffold115 GLEAN mRNA 531743 546816 0.997171 + . ID=CGI_10021403; scaffold115 TRF Tandem_Repeat 532089 532132 88 + . . scaffold115 TRF Tandem_Repeat 535055 535427 334 + . . scaffold115 TRF Tandem_Repeat 536406 537106 1103 + . . scaffold115 GLEAN promoter 553082 554081 1 + . ID=CGI_10021404; scaffold115 GLEAN mRNA 554082 561575 1 + . ID=CGI_10021404; scaffold115 TRF Tandem_Repeat 555985 556116 228 + . . scaffold115 TRF Tandem_Repeat 556548 556619 126 + . . scaffold115 TRF Tandem_Repeat 561113 561145 50 + . . scaffold115 TRF Tandem_Repeat 561167 561209 86 + . . scaffold115 GLEAN mRNA 562515 567625 0.999948 - . ID=CGI_10021405; scaffold115 GLEAN promoter 567626 568625 0.999948 - . ID=CGI_10021405; scaffold115 TRF Tandem_Repeat 568908 569015 103 + . . scaffold115 TRF Tandem_Repeat 568910 569097 198 + . . scaffold115 TRF Tandem_Repeat 569096 569255 167 + . . scaffold115 GLEAN mRNA 572940 575454 0.984549 - . ID=CGI_10021406; scaffold115 GLEAN promoter 574453 575452 0.845977 + . ID=CGI_10021407; scaffold115 GLEAN mRNA 575453 585479 0.845977 + . ID=CGI_10021407; scaffold115 GLEAN promoter 575455 576454 0.984549 - . ID=CGI_10021406; scaffold115 TRF Tandem_Repeat 577836 577885 84 + . . scaffold115 WUBlastX LINE_L2 580266 581072 72 + . . scaffold115 WUBlastX LINE_CR1-L2 580695 581072 86 + . . scaffold115 WUBlastX LINE_CR1-L2 581054 581323 63 + . . scaffold115 WUBlastX LINE_CR1-L2 581054 581371 58 + . . scaffold115 WUBlastX LINE_Penelope 593979 594944 470 - . . scaffold115 TRF Tandem_Repeat 599780 599813 50 + . . scaffold115 GLEAN promoter 611618 612617 1 + . ID=CGI_10021408; scaffold115 GLEAN mRNA 612618 612989 1 + . ID=CGI_10021408; scaffold115 GLEAN promoter 616761 617760 0.999676 + . ID=CGI_10021409; scaffold115 GLEAN mRNA 617761 631483 0.999676 + . ID=CGI_10021409; scaffold115 TRF Tandem_Repeat 621212 621247 63 + . . scaffold115 TRF Tandem_Repeat 622375 622459 143 + . . scaffold115 WUBlastX DNA_TcMar-Marin 624012 624152 38 + . . scaffold115 WUBlastX DNA_TcMar-Marin 624054 624170 36 + . . scaffold115 WUBlastX DNA_TcMar-Marin 624640 624714 28 + . . scaffold115 WUBlastX DNA_IS4EU 625843 626160 58 - . . scaffold115 TRF Tandem_Repeat 628530 629052 455 + . . scaffold115 TRF Tandem_Repeat 631488 631527 80 + . . scaffold115 GLEAN mRNA 638052 650764 0.999185 - . ID=CGI_10021410; scaffold115 TRF Tandem_Repeat 641063 641166 58 + . . scaffold115 TRF Tandem_Repeat 641063 641166 62 + . . scaffold115 TRF Tandem_Repeat 642596 643378 1239 + . . scaffold115 TRF Tandem_Repeat 642596 643378 1230 + . . scaffold115 TRF Tandem_Repeat 645935 646292 167 + . . scaffold115 TRF Tandem_Repeat 645997 646328 558 + . . scaffold115 GLEAN promoter 649573 650572 0.979488 + . ID=CGI_10021411; scaffold115 TRF Tandem_Repeat 649848 649971 160 + . . scaffold115 GLEAN mRNA 650573 650806 0.979488 + . ID=CGI_10021411; scaffold115 GLEAN promoter 650765 651764 0.999185 - . ID=CGI_10021410; scaffold115 GLEAN mRNA 653838 661215 0.929497 - . ID=CGI_10021412; scaffold115 GLEAN promoter 661216 662215 0.929497 - . ID=CGI_10021412; scaffold115 TRF Tandem_Repeat 663006 663039 50 + . . scaffold115 WUBlastX LINE_RTE-X 674963 675100 27 + . . scaffold115 WUBlastX LINE_Jockey 675165 675260 26 + . . scaffold115 WUBlastX LINE_L2 675183 675287 34 + . . scaffold115 WUBlastX LINE_RTE-X 675272 675604 118 + . . scaffold115 WUBlastX LINE_RTE-X 675574 676140 121 + . . scaffold115 WUBlastX LINE_RTE-X 675748 676218 62 + . . scaffold1152 GLEAN promoter 19256 20255 0.649443 + . ID=CGI_10001764; scaffold1152 GLEAN mRNA 20256 20426 0.649443 + . ID=CGI_10001764; scaffold1152 GLEAN mRNA 23361 23522 0.618186 - . ID=CGI_10001765; scaffold1152 GLEAN promoter 23523 24522 0.618186 - . ID=CGI_10001765; scaffold1152 GLEAN promoter 27325 28324 1 + . ID=CGI_10001766; scaffold1152 GLEAN mRNA 28325 28645 1 + . ID=CGI_10001766; scaffold1154 WUBlastX DNA_TcMar-Tc1 4029 4073 24 - . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4072 4680 399 - . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4688 5065 46 - . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4748 4993 59 - . . scaffold1154 WUBlastX DNA_TcMar-Tc1 4748 4951 89 - . . scaffold1154 GLEAN mRNA 5994 12149 0.999999 - . ID=CGI_10026147; scaffold1154 TRF Tandem_Repeat 10159 10186 56 + . . scaffold1154 GLEAN promoter 12150 13149 0.999999 - . ID=CGI_10026147; scaffold1154 TRF Tandem_Repeat 14319 14349 62 + . . scaffold1154 TRF Tandem_Repeat 23542 23590 98 + . . scaffold1154 WUBlastX LINE_L2 28071 28490 150 + . . scaffold1154 WUBlastX LINE_L2 28170 28502 239 + . . scaffold1154 WUBlastX LINE_L2 28170 28847 229 + . . scaffold1154 WUBlastX LINE_L2 28502 28984 187 + . . scaffold1154 WUBlastX LINE_L2 28520 29068 157 + . . scaffold1154 WUBlastX LINE_CR1 28532 29233 46 + . . scaffold1154 WUBlastX LINE_CR1-L2 29196 29336 51 + . . scaffold1154 WUBlastX LINE_L2 29226 29741 153 + . . scaffold1154 WUBlastX LINE_CR1-L2 29768 29848 30 + . . scaffold1154 WUBlastX LINE_L2 29768 29827 36 + . . scaffold1154 GLEAN mRNA 54055 56711 1 - . ID=CGI_10026148; scaffold1154 GLEAN promoter 56712 57711 1 - . ID=CGI_10026148; scaffold1154 TRF Tandem_Repeat 60768 60813 92 + . . scaffold1154 GLEAN promoter 64325 65324 0.77656 + . ID=CGI_10026149; scaffold1154 GLEAN mRNA 65325 66512 0.77656 + . ID=CGI_10026149; scaffold1154 WUBlastX DNA_Kolobok-Hyd 65475 65912 36 + . . scaffold1154 GLEAN promoter 68456 69455 0.691014 + . ID=CGI_10026150; scaffold1154 GLEAN mRNA 69456 71141 0.691014 + . ID=CGI_10026150; scaffold1154 GLEAN promoter 72469 73468 0.691204 + . ID=CGI_10026151; scaffold1154 GLEAN mRNA 73469 75154 0.691204 + . ID=CGI_10026151; scaffold1154 GLEAN mRNA 76280 76798 0.999375 - . ID=CGI_10026152; scaffold1154 GLEAN promoter 76799 77798 0.999375 - . ID=CGI_10026152; scaffold1154 GLEAN promoter 76848 77847 0.722376 + . ID=CGI_10026153; scaffold1154 GLEAN mRNA 77848 100664 0.722376 + . ID=CGI_10026153; scaffold1154 TRF Tandem_Repeat 88759 88816 64 + . . scaffold1154 TRF Tandem_Repeat 88760 88816 80 + . . scaffold1154 TRF Tandem_Repeat 88985 89812 1128 + . . scaffold1154 TRF Tandem_Repeat 92844 97676 6446 + . . scaffold1154 WUBlastX DNA_hAT-Tip100 101860 102924 42 + . . scaffold1154 WUBlastX DNA_hAT-Tip100 102094 102939 103 + . . scaffold1154 WUBlastX DNA_hAT-Tip100 102268 102897 206 + . . scaffold1154 WUBlastX DNA_hAT-Tip100 103132 103344 38 + . . scaffold1154 WUBlastX DNA_hAT-Tip100 103610 103726 20 + . . scaffold1154 WUBlastX DNA_hAT-Tip100 103936 104457 111 + . . scaffold1154 TRF Tandem_Repeat 107152 107264 208 + . . scaffold1154 TRF Tandem_Repeat 107553 107603 93 + . . scaffold1154 TRF Tandem_Repeat 107858 107907 91 + . . scaffold1154 TRF Tandem_Repeat 108527 108569 86 + . . scaffold1154 TRF Tandem_Repeat 109394 109470 145 + . . scaffold1154 WUBlastX LTR_DIRS 117377 117628 54 - . . scaffold1154 WUBlastX LTR_DIRS 117537 118145 88 - . . scaffold1154 WUBlastX LTR_DIRS 117639 118085 279 - . . scaffold1154 WUBlastX LTR_DIRS 117917 118651 517 - . . scaffold1154 WUBlastX LTR_DIRS 118196 118768 112 - . . scaffold1154 WUBlastX LTR_DIRS 118807 120114 987 - . . scaffold1154 WUBlastX LTR_Gypsy 119152 120357 128 - . . scaffold1154 WUBlastX LTR_Gypsy 120305 120469 21 - . . scaffold1154 WUBlastX LTR_DIRS 120436 121008 53 - . . scaffold1154 TRF Tandem_Repeat 122015 122056 84 + . . scaffold1154 GLEAN mRNA 126524 188335 0.933838 - . ID=CGI_10026155; scaffold1154 TRF Tandem_Repeat 133861 134606 759 + . . scaffold1154 WUBlastX DNA_PiggyBac 173706 174545 333 + . . scaffold1154 WUBlastX DNA_PiggyBac 173841 175463 765 + . . scaffold1154 GLEAN promoter 188336 189335 0.933838 - . ID=CGI_10026155; scaffold1154 WUBlastX LTR_Pao 207728 208507 135 + . . scaffold1154 WUBlastX LTR_Pao 208007 211198 1814 + . . scaffold1154 WUBlastX LTR_Pao 208643 211198 1815 + . . scaffold1154 WUBlastX LTR_Pao 211171 213843 2329 + . . scaffold1154 WUBlastX DNA_En-Spm 214470 215108 129 + . . scaffold1154 WUBlastX DNA_En-Spm 214578 215126 199 + . . scaffold1154 GLEAN mRNA 221230 227682 0.517509 - . ID=CGI_10026156; scaffold1154 WUBlastX LINE_RTE-X 221585 221809 53 + . . scaffold1154 GLEAN promoter 227683 228682 0.517509 - . ID=CGI_10026156; scaffold1154 WUBlastX DNA_TcMar-Marin 228916 229056 64 - . . scaffold1154 WUBlastX DNA_TcMar-Marin 228946 229179 67 - . . scaffold1154 GLEAN promoter 230157 231156 0.558382 + . ID=CGI_10026157; scaffold1154 GLEAN mRNA 231157 231676 0.558382 + . ID=CGI_10026157; scaffold1154 GLEAN mRNA 235155 235346 0.423078 - . ID=CGI_10026158; scaffold1154 GLEAN promoter 235347 236346 0.423078 - . ID=CGI_10026158; scaffold1154 GLEAN promoter 243574 244573 0.991043 + . ID=CGI_10026159; scaffold1154 GLEAN mRNA 244574 255143 0.991043 + . ID=CGI_10026159; scaffold1154 TRF Tandem_Repeat 245366 245403 76 + . . scaffold1154 GLEAN mRNA 255947 257846 1 - . ID=CGI_10026160; scaffold1154 GLEAN promoter 257847 258846 1 - . ID=CGI_10026160; scaffold1154 WUBlastX LTR_DIRS 273159 274325 201 + . . scaffold1154 WUBlastX LTR_DIRS 274312 274416 22 + . . scaffold1154 TRF Tandem_Repeat 275045 275103 75 + . . scaffold1154 TRF Tandem_Repeat 275264 275338 93 + . . scaffold1154 TRF Tandem_Repeat 276467 276545 70 + . . scaffold1154 WUBlastX DNA_MuDR 279490 280362 45 - . . scaffold1154 WUBlastX LTR_DIRS? 280345 280506 82 - . . scaffold1154 TRF Tandem_Repeat 293367 293473 124 + . . scaffold1154 GLEAN mRNA 300263 342126 0.0862783 - . ID=CGI_10026162; scaffold1154 WUBlastX DNA_Kolobok-IS4 300308 300589 69 - . . scaffold1154 WUBlastX DNA_P 307901 309988 925 - . . scaffold1154 TRF Tandem_Repeat 323767 323795 58 + . . scaffold1154 WUBlastX LTR_DIRS 327841 328341 125 + . . scaffold1154 WUBlastX LTR_DIRS 328382 329125 125 + . . scaffold1154 WUBlastX LTR_DIRS 328523 329119 208 + . . scaffold1154 WUBlastX LTR_DIRS 328616 329119 330 + . . scaffold1154 WUBlastX LTR_DIRS 328664 329947 131 + . . scaffold1154 WUBlastX LTR_DIRS 329125 329466 167 + . . scaffold1154 WUBlastX LTR_DIRS 329125 329550 147 + . . scaffold1154 WUBlastX LTR_DIRS 329943 330296 152 + . . scaffold1154 WUBlastX LTR_DIRS 330778 331749 514 + . . scaffold1154 GLEAN promoter 333135 334134 0.999981 + . ID=CGI_10026163; scaffold1154 GLEAN mRNA 334135 346971 0.999981 + . ID=CGI_10026163; scaffold1154 GLEAN promoter 342127 343126 0.0862783 - . ID=CGI_10026162; scaffold1154 TRF Tandem_Repeat 351023 351081 118 + . . scaffold1154 GLEAN mRNA 360464 375818 0.544657 - . ID=CGI_10026164; scaffold1154 GLEAN promoter 364982 365981 0.558383 + . ID=CGI_10026165; scaffold1154 GLEAN mRNA 365982 369978 0.558383 + . ID=CGI_10026165; scaffold1154 WUBlastX LTR_Ngaro 366212 366556 126 + . . scaffold1154 WUBlastX LTR_DIRS 366788 367216 26 + . . scaffold1154 WUBlastX LTR_Ngaro 366896 368362 691 + . . scaffold1154 WUBlastX LTR_Ngaro 368364 368459 37 + . . scaffold1154 WUBlastX LTR_Ngaro 368379 368477 25 + . . scaffold1154 WUBlastX LTR_Ngaro 368480 368851 108 + . . scaffold1154 WUBlastX LTR_Ngaro 368737 369360 187 + . . scaffold1154 WUBlastX LTR_Ngaro 368833 369360 247 + . . scaffold1154 WUBlastX LINE_RTE-X 369732 370094 79 + . . scaffold1154 TRF Tandem_Repeat 374636 374719 168 + . . scaffold1154 GLEAN promoter 375819 376818 0.544657 - . ID=CGI_10026164; scaffold1154 WUBlastX LTR_Gypsy 376654 376860 88 + . . scaffold1154 WUBlastX LTR_Gypsy 376776 377243 175 + . . scaffold1154 WUBlastX LTR_Gypsy 376866 377243 310 + . . scaffold1154 GLEAN promoter 377055 378054 0.618159 + . ID=CGI_10026166; scaffold1154 WUBlastX LTR_Gypsy-Cigr 377234 377374 112 + . . scaffold1154 WUBlastX LTR_Gypsy 377249 377398 35 + . . scaffold1154 WUBlastX LTR_Gypsy-Cigr 377398 377727 126 + . . scaffold1154 WUBlastX LTR_Gypsy-Cigr 377419 377829 70 + . . scaffold1154 GLEAN mRNA 378055 378345 0.618159 + . ID=CGI_10026166; scaffold1154 GLEAN promoter 380746 381745 0.758164 + . ID=CGI_10026167; scaffold1154 GLEAN mRNA 381746 383324 0.758164 + . ID=CGI_10026167; scaffold1154 TRF Tandem_Repeat 384270 384324 110 + . . scaffold1154 WUBlastX LTR_Gypsy 390864 390998 21 + . . scaffold1154 WUBlastX LTR_Gypsy 390915 391040 28 + . . scaffold1154 WUBlastX LTR_Gypsy 390988 391251 122 + . . scaffold1154 WUBlastX LTR_Gypsy 391039 391347 148 + . . scaffold1154 WUBlastX LTR_Gypsy 391078 391251 178 + . . scaffold1154 WUBlastX LTR_Gypsy 391078 391308 162 + . . scaffold1154 WUBlastX LTR_Gypsy-Cigr 391632 391703 20 + . . scaffold1154 WUBlastX LTR_Gypsy-Cigr 392038 393576 551 + . . scaffold1154 WUBlastX LTR_Gypsy 393454 393603 37 + . . scaffold1154 WUBlastX LTR_Gypsy 393603 393941 96 + . . scaffold1154 WUBlastX LTR_Gypsy 393666 394436 323 + . . scaffold1154 WUBlastX LTR_Gypsy 393684 394595 159 + . . scaffold1154 TRF Tandem_Repeat 396213 396261 80 + . . scaffold1154 TRF Tandem_Repeat 396213 396258 65 + . . scaffold1154 WUBlastX DNA_MuDR 400618 400827 20 - . . scaffold1154 GLEAN mRNA 400669 406858 0.774692 - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_MuDR 400744 400845 33 - . . scaffold1154 WUBlastX DNA_MuDR 401284 401529 67 - . . scaffold1154 WUBlastX DNA_MuDR 401284 401583 39 - . . scaffold1154 WUBlastX DNA_Harbinger 403774 404304 220 + . . scaffold1154 WUBlastX DNA_Harbinger 403783 404427 192 + . . scaffold1154 GLEAN promoter 406859 407858 0.774692 - . ID=CGI_10026168; scaffold1154 WUBlastX DNA_Harbinger 407302 407604 126 - . . scaffold1154 GLEAN mRNA 414097 418873 0.918546 - . ID=CGI_10026169; scaffold1154 GLEAN promoter 417999 418998 1 + . ID=CGI_10026170; scaffold1154 GLEAN promoter 418874 419873 0.918546 - . ID=CGI_10026169; scaffold1154 GLEAN mRNA 418999 419811 1 + . ID=CGI_10026170; scaffold1154 GLEAN mRNA 422796 440807 0.998192 - . ID=CGI_10026171; scaffold1154 TRF Tandem_Repeat 424356 424403 64 + . . scaffold1154 GLEAN promoter 440808 441807 0.998192 - . ID=CGI_10026171; scaffold1154 WUBlastX LINE_L1-Tx1 444632 444757 43 + . . scaffold1154 GLEAN mRNA 459792 466671 0.558395 - . ID=CGI_10026172; scaffold1154 TRF Tandem_Repeat 463333 463387 58 + . . scaffold1154 TRF Tandem_Repeat 463339 463371 66 + . . scaffold1154 GLEAN promoter 466672 467671 0.558395 - . ID=CGI_10026172; scaffold1154 WUBlastX LTR_Gypsy 471913 472023 46 + . . scaffold1154 WUBlastX LTR_Gypsy 471983 472351 103 + . . scaffold1154 WUBlastX LTR_Gypsy 472034 472318 138 + . . scaffold1154 WUBlastX LTR_Gypsy 472269 472457 82 + . . scaffold1154 WUBlastX LTR_Gypsy 472425 472802 23 + . . scaffold1154 WUBlastX LTR_Gypsy 472426 472566 53 + . . scaffold1154 WUBlastX LTR_Gypsy 472587 472697 38 + . . scaffold1154 WUBlastX LTR_Gypsy 472599 472691 51 + . . scaffold1154 WUBlastX LTR_Gypsy 472802 473122 77 + . . scaffold1154 WUBlastX LTR_Gypsy 472904 473212 69 + . . scaffold1154 TRF Tandem_Repeat 476394 476441 60 + . . scaffold1154 TRF Tandem_Repeat 476395 476445 75 + . . scaffold1154 TRF Tandem_Repeat 476472 477765 1925 + . . scaffold1154 WUBlastX DNA_Kolobok 489686 489925 36 - . . scaffold1154 WUBlastX LTR_Copia 497229 498185 46 - . . scaffold1154 WUBlastX LTR_Gypsy 497385 498200 673 - . . scaffold1154 WUBlastX LTR_Gypsy 498049 498621 82 - . . scaffold1154 WUBlastX LTR_Gypsy 498178 498474 147 - . . scaffold1154 GLEAN promoter 501567 502566 1 + . ID=CGI_10026173; scaffold1154 GLEAN mRNA 502567 506876 1 + . ID=CGI_10026173; scaffold1154 GLEAN promoter 509646 510645 0.998985 + . ID=CGI_10026174; scaffold1154 GLEAN mRNA 510646 527431 0.998985 + . ID=CGI_10026174; scaffold1154 TRF Tandem_Repeat 511412 511575 310 + . . scaffold1154 TRF Tandem_Repeat 511966 512548 932 + . . scaffold1154 TRF Tandem_Repeat 516432 516891 773 + . . scaffold1154 GLEAN mRNA 528764 531780 1 - . ID=CGI_10026175; scaffold1154 TRF Tandem_Repeat 531250 531293 88 + . . scaffold1154 TRF Tandem_Repeat 531291 531322 64 + . . scaffold1154 GLEAN promoter 531781 532780 1 - . ID=CGI_10026175; scaffold1154 TRF Tandem_Repeat 534470 534513 88 + . . scaffold1154 GLEAN promoter 535903 536902 0.537616 + . ID=CGI_10026176; scaffold1154 GLEAN mRNA 536903 551510 0.537616 + . ID=CGI_10026176; scaffold1154 WUBlastX LINE_L1-Tx1 567832 568836 192 - . . scaffold1154 WUBlastX LINE_L1-Tx1 567964 568791 202 - . . scaffold1154 WUBlastX LINE_L1-Tx1 571248 571748 31 - . . scaffold1154 WUBlastX LINE_L1 571374 571772 132 - . . scaffold1154 WUBlastX LINE_L1-Tx1 571434 571793 206 - . . scaffold1154 WUBlastX LINE_L1-Tx1 571770 572099 192 - . . scaffold1154 WUBlastX LINE_L1-Tx1 572693 572788 22 - . . scaffold1154 TRF Tandem_Repeat 573686 574143 684 + . . scaffold1154 TRF Tandem_Repeat 575873 575911 60 + . . scaffold1154 TRF Tandem_Repeat 576075 576343 125 + . . scaffold1154 TRF Tandem_Repeat 576077 576289 169 + . . scaffold1154 TRF Tandem_Repeat 576201 576345 111 + . . scaffold1154 TRF Tandem_Repeat 577024 577153 129 + . . scaffold1154 GLEAN mRNA 580219 581169 0.999642 - . ID=CGI_10026177; scaffold1154 GLEAN promoter 581170 582169 0.999642 - . ID=CGI_10026177; scaffold1154 TRF Tandem_Repeat 587416 587651 192 + . . scaffold1154 TRF Tandem_Repeat 589952 590381 169 + . . scaffold1154 TRF Tandem_Repeat 591036 591094 64 + . . scaffold1154 TRF Tandem_Repeat 591037 591087 57 + . . scaffold1154 TRF Tandem_Repeat 591099 591900 1149 + . . scaffold1154 GLEAN mRNA 592712 637655 0.191782 - . ID=CGI_10026178; scaffold1154 TRF Tandem_Repeat 594136 594173 51 + . . scaffold1154 TRF Tandem_Repeat 597024 597085 67 + . . scaffold1154 TRF Tandem_Repeat 598806 598843 51 + . . scaffold1154 TRF Tandem_Repeat 599013 600183 1814 + . . scaffold1154 TRF Tandem_Repeat 607351 607392 61 + . . scaffold1154 GLEAN promoter 609839 610838 1 + . ID=CGI_10026179; scaffold1154 GLEAN mRNA 610839 616811 1 + . ID=CGI_10026179; scaffold1154 GLEAN promoter 623576 624575 0.593391 + . ID=CGI_10026180; scaffold1154 GLEAN mRNA 624576 639648 0.593391 + . ID=CGI_10026180; scaffold1154 TRF Tandem_Repeat 625272 625329 82 + . . scaffold1154 TRF Tandem_Repeat 625273 625329 62 + . . scaffold1154 WUBlastX LTR_DIRS 632783 633778 488 - . . scaffold1154 TRF Tandem_Repeat 633976 634343 529 + . . scaffold1154 WUBlastX LTR_DIRS 634460 635167 347 - . . scaffold1154 WUBlastX LTR_DIRS 635166 635705 119 - . . scaffold1154 WUBlastX LTR_DIRS 635605 636108 163 - . . scaffold1154 WUBlastX LTR_DIRS 635716 636096 226 - . . scaffold1154 WUBlastX LTR_DIRS 636529 637512 160 - . . scaffold1154 GLEAN promoter 637656 638655 0.191782 - . ID=CGI_10026178; scaffold1154 GLEAN mRNA 641731 648608 1 - . ID=CGI_10026181; scaffold1154 GLEAN promoter 648609 649608 1 - . ID=CGI_10026181; scaffold1154 GLEAN mRNA 649267 674582 0.695104 - . ID=CGI_10026182; scaffold1154 WUBlastX LINE_RTE-X 663186 663467 25 - . . scaffold1154 TRF Tandem_Repeat 667011 668010 1334 + . . scaffold1154 TRF Tandem_Repeat 667011 668010 1334 + . . scaffold1154 TRF Tandem_Repeat 667832 667935 80 + . . scaffold1154 GLEAN promoter 674583 675582 0.695104 - . ID=CGI_10026182; scaffold1154 TRF Tandem_Repeat 682044 682089 92 + . . scaffold1154 TRF Tandem_Repeat 685861 685885 50 + . . scaffold1154 TRF Tandem_Repeat 697597 697668 144 + . . scaffold1154 WUBlastX LINE_RTE-X 706739 708058 446 + . . scaffold1154 TRF Tandem_Repeat 711278 711306 58 + . . scaffold1154 GLEAN mRNA 722596 740419 0.999027 - . ID=CGI_10026183; scaffold1154 TRF Tandem_Repeat 726619 726678 64 + . . scaffold1154 TRF Tandem_Repeat 726841 727021 118 + . . scaffold1154 TRF Tandem_Repeat 735167 735214 96 + . . scaffold1154 GLEAN promoter 740420 741419 0.999027 - . ID=CGI_10026183; scaffold1154 GLEAN mRNA 743306 744453 1 - . ID=CGI_10026184; scaffold1154 GLEAN promoter 743908 744907 0.593387 + . ID=CGI_10026185; scaffold1154 GLEAN promoter 744454 745453 1 - . ID=CGI_10026184; scaffold1154 GLEAN mRNA 744908 745438 0.593387 + . ID=CGI_10026185; scaffold1154 TRF Tandem_Repeat 746566 746623 73 + . . scaffold1154 TRF Tandem_Repeat 746572 746623 86 + . . scaffold1154 GLEAN mRNA 753566 774358 0.753252 - . ID=CGI_10026186; scaffold1154 TRF Tandem_Repeat 763363 763477 126 + . . scaffold1154 GLEAN promoter 774359 775358 0.753252 - . ID=CGI_10026186; scaffold1154 GLEAN mRNA 775925 788471 0.208391 - . ID=CGI_10026187; scaffold1154 TRF Tandem_Repeat 777659 777707 98 + . . scaffold1154 GLEAN promoter 788472 789471 0.208391 - . ID=CGI_10026187; scaffold1154 GLEAN mRNA 789994 792395 0.999999 - . ID=CGI_10026188; scaffold1154 GLEAN promoter 792396 793395 0.999999 - . ID=CGI_10026188; scaffold1154 GLEAN mRNA 793370 801989 0.529346 - . ID=CGI_10026189; scaffold1154 TRF Tandem_Repeat 800965 800994 60 + . . scaffold1154 GLEAN promoter 801990 802989 0.529346 - . ID=CGI_10026189; scaffold1154 TRF Tandem_Repeat 803141 803191 102 + . . scaffold1154 TRF Tandem_Repeat 803762 803821 113 + . . scaffold1154 GLEAN mRNA 803931 805166 1 - . ID=CGI_10026190; scaffold1154 GLEAN promoter 805167 806166 1 - . ID=CGI_10026190; scaffold1154 TRF Tandem_Repeat 806938 806969 50 + . . scaffold1154 GLEAN mRNA 811283 818578 1 - . ID=CGI_10026191; scaffold1154 WUBlastX LINE_RTE-X 813780 814136 60 + . . scaffold1154 WUBlastX LINE_RTE-X 813852 814166 64 + . . scaffold1154 TRF Tandem_Repeat 817013 817065 106 + . . scaffold1154 GLEAN promoter 818579 819578 1 - . ID=CGI_10026191; scaffold1154 GLEAN mRNA 818627 819951 1 - . ID=CGI_10026192; scaffold1154 GLEAN promoter 819952 820951 1 - . ID=CGI_10026192; scaffold1154 GLEAN mRNA 825546 829649 0.981461 - . ID=CGI_10026193; scaffold1154 TRF Tandem_Repeat 826499 826532 68 + . . scaffold1154 TRF Tandem_Repeat 826532 826588 114 + . . scaffold1154 TRF Tandem_Repeat 828247 828273 54 + . . scaffold1154 GLEAN promoter 829650 830649 0.981461 - . ID=CGI_10026193; scaffold1154 WUBlastX LINE_RTE-X 831378 831647 24 + . . scaffold1154 WUBlastX LINE_RTE-X 831417 831635 24 + . . scaffold1154 WUBlastX LINE_L1-Tx1 837264 837371 39 + . . scaffold1154 WUBlastX LINE_L1-Tx1 837364 837756 60 + . . scaffold1154 WUBlastX LINE_L1-Tx1 837379 837612 62 + . . scaffold1154 TRF Tandem_Repeat 837889 837938 100 + . . scaffold1154 WUBlastX LINE_L1-Tx1 842687 842737 20 + . . scaffold1154 WUBlastX LINE_L1-Tx1 842743 842973 21 + . . scaffold1154 WUBlastX LINE_L1-Tx1 842973 843098 30 + . . scaffold1154 WUBlastX LINE_L1-Tx1 843009 843869 82 + . . scaffold1154 WUBlastX LINE_L1-Tx1 843194 844006 68 + . . scaffold1154 WUBlastX LINE_L1-Tx1 843582 843857 87 + . . scaffold1154 WUBlastX LINE_L1 843833 844054 32 + . . scaffold1154 WUBlastX LINE_CR1-L2 845308 845676 113 - . . scaffold1154 TRF Tandem_Repeat 848071 848097 54 + . . scaffold1154 TRF Tandem_Repeat 848119 848150 64 + . . scaffold1154 TRF Tandem_Repeat 850976 851034 75 + . . scaffold1154 TRF Tandem_Repeat 851207 851307 118 + . . scaffold1154 WUBlastX DNA_Harbinger 852502 852699 37 - . . scaffold1154 WUBlastX DNA_Harbinger 852850 853416 397 - . . scaffold1154 TRF Tandem_Repeat 853933 853959 54 + . . scaffold1154 WUBlastX DNA_Harbinger 854063 854383 59 - . . scaffold1154 WUBlastX DNA_Harbinger 854162 854383 93 - . . scaffold1154 WUBlastX DNA_Harbinger 854192 854431 55 - . . scaffold1154 GLEAN promoter 854277 855276 0.999993 + . ID=CGI_10026194; scaffold1154 GLEAN mRNA 855277 860957 0.999993 + . ID=CGI_10026194; scaffold1154 GLEAN promoter 862528 863527 0.999365 + . ID=CGI_10026195; scaffold1154 GLEAN mRNA 863528 863728 0.999365 + . ID=CGI_10026195; scaffold1154 WUBlastX DNA_Sola 880682 880939 74 - . . scaffold1154 TRF Tandem_Repeat 885723 885756 50 + . . scaffold1154 TRF Tandem_Repeat 910386 910424 69 + . . scaffold1154 TRF Tandem_Repeat 911470 911513 79 + . . scaffold1154 GLEAN promoter 921727 922726 0.999993 + . ID=CGI_10026196; scaffold1154 GLEAN mRNA 922727 925261 0.999993 + . ID=CGI_10026196; scaffold1154 GLEAN promoter 928091 929090 0.369029 + . ID=CGI_10026197; scaffold1154 GLEAN mRNA 929091 932034 0.369029 + . ID=CGI_10026197; scaffold1154 TRF Tandem_Repeat 932747 932791 90 + . . scaffold1154 TRF Tandem_Repeat 934208 934854 827 + . . scaffold1154 GLEAN mRNA 939257 973284 0.309787 - . ID=CGI_10026198; scaffold1154 TRF Tandem_Repeat 942100 942603 665 + . . scaffold1154 GLEAN promoter 973285 974284 0.309787 - . ID=CGI_10026198; scaffold1154 GLEAN promoter 974016 975015 0.965913 + . ID=CGI_10026199; scaffold1154 GLEAN mRNA 975016 975420 0.965913 + . ID=CGI_10026199; scaffold1154 TRF Tandem_Repeat 988000 988060 122 + . . scaffold1154 GLEAN promoter 988707 989706 0.999949 + . ID=CGI_10026200; scaffold1154 GLEAN mRNA 989707 998859 0.999949 + . ID=CGI_10026200; scaffold1154 GLEAN promoter 1000784 1001783 0.997731 + . ID=CGI_10026201; scaffold1154 GLEAN mRNA 1001784 1005134 0.997731 + . ID=CGI_10026201; scaffold1154 TRF Tandem_Repeat 1005728 1005760 66 + . . scaffold1154 WUBlastX LTR_DIRS 1009147 1009617 103 + . . scaffold1154 WUBlastX LTR_DIRS 1009819 1009929 25 + . . scaffold1154 WUBlastX LTR_DIRS 1009923 1010312 26 + . . scaffold1154 GLEAN promoter 1012595 1013594 0.968005 + . ID=CGI_10026202; scaffold1154 GLEAN mRNA 1013595 1023587 0.968005 + . ID=CGI_10026202; scaffold1154 TRF Tandem_Repeat 1024108 1024133 52 + . . scaffold1154 WUBlastX LTR_Ngaro 1026936 1027919 385 - . . scaffold1154 WUBlastX LTR_Ngaro 1027844 1029505 1099 - . . scaffold1154 WUBlastX LTR_Ngaro 1029477 1030223 104 - . . scaffold1154 WUBlastX LTR_Ngaro 1029624 1030115 212 - . . scaffold1154 WUBlastX LTR_Ngaro 1029714 1030493 176 - . . scaffold1154 WUBlastX LTR_Ngaro 1029714 1030115 247 - . . scaffold1154 GLEAN promoter 1030436 1031435 0.969571 + . ID=CGI_10026203; scaffold1154 GLEAN mRNA 1031436 1038206 0.969571 + . ID=CGI_10026203; scaffold1154 WUBlastX LINE_RTE-X 1033017 1033421 65 + . . scaffold1154 WUBlastX LINE_RTE-X 1033077 1033415 80 + . . scaffold1154 TRF Tandem_Repeat 1039653 1040743 1251 + . . scaffold1154 TRF Tandem_Repeat 1042386 1043743 766 + . . scaffold1154 TRF Tandem_Repeat 1042510 1043721 568 + . . scaffold1154 GLEAN promoter 1043766 1044765 0.998248 + . ID=CGI_10026204; scaffold1154 GLEAN mRNA 1044766 1066863 0.998248 + . ID=CGI_10026204; scaffold1154 GLEAN mRNA 1047390 1048891 0.999929 - . ID=CGI_10026205; scaffold1154 GLEAN promoter 1048892 1049891 0.999929 - . ID=CGI_10026205; scaffold1154 GLEAN mRNA 1057871 1066856 0.971858 - . ID=CGI_10026206; scaffold1154 TRF Tandem_Repeat 1058240 1058275 72 + . . scaffold1154 GLEAN promoter 1066857 1067856 0.971858 - . ID=CGI_10026206; scaffold1154 WUBlastX LTR_Ngaro 1073929 1074060 25 - . . scaffold1154 WUBlastX DNA_Kolobok-IS4 1079350 1079658 82 + . . scaffold1154 WUBlastX DNA_Kolobok-IS4 1080136 1080198 23 - . . scaffold1154 WUBlastX DNA_IS4EU 1080198 1080596 142 - . . scaffold1154 GLEAN mRNA 1080378 1140871 0.124336 - . ID=CGI_10026207; scaffold1154 WUBlastX DNA_Kolobok-IS4 1080593 1080670 22 - . . scaffold1154 WUBlastX DNA_IS4EU 1080676 1080801 45 - . . scaffold1154 GLEAN promoter 1081869 1082868 0.777732 + . ID=CGI_10026208; scaffold1154 GLEAN mRNA 1082869 1084389 0.777732 + . ID=CGI_10026208; scaffold1154 TRF Tandem_Repeat 1112444 1112481 58 + . . scaffold1154 WUBlastX LINE_Penelope 1115898 1116158 43 + . . scaffold1154 TRF Tandem_Repeat 1125774 1125870 117 + . . scaffold1154 TRF Tandem_Repeat 1126045 1126078 50 + . . scaffold1154 TRF Tandem_Repeat 1136307 1136346 53 + . . scaffold1154 TRF Tandem_Repeat 1137633 1137662 60 + . . scaffold1154 TRF Tandem_Repeat 1137682 1138052 388 + . . scaffold1154 TRF Tandem_Repeat 1137689 1138032 373 + . . scaffold1154 GLEAN promoter 1140872 1141871 0.124336 - . ID=CGI_10026207; scaffold1154 WUBlastX DNA_Merlin 1144449 1144625 110 - . . scaffold1154 WUBlastX DNA_Merlin 1144455 1144688 80 - . . scaffold1154 WUBlastX DNA_Merlin 1144455 1144814 58 - . . scaffold1154 WUBlastX LINE_L1-Tx1 1146566 1148068 410 + . . scaffold1154 TRF Tandem_Repeat 1148105 1148143 78 + . . scaffold1154 TRF Tandem_Repeat 1148366 1148417 104 + . . scaffold1154 WUBlastX LTR_Gypsy 1150878 1151627 353 + . . scaffold1154 WUBlastX LTR_Gypsy 1150884 1151483 361 + . . scaffold1154 WUBlastX LTR_Gypsy 1150896 1151759 95 + . . scaffold1154 WUBlastX LINE_LOA 1151712 1151780 22 + . . scaffold1154 WUBlastX LTR_Gypsy 1151866 1151925 20 + . . scaffold1154 WUBlastX LTR_Gypsy 1151903 1153204 728 + . . scaffold1154 WUBlastX LTR_Gypsy 1153209 1153520 297 + . . scaffold1154 WUBlastX LTR_Gypsy 1153529 1153936 345 + . . scaffold1154 WUBlastX LTR_Gypsy 1153897 1154238 83 + . . scaffold1154 GLEAN promoter 1154101 1155100 0.449004 + . ID=CGI_10026209; scaffold1154 WUBlastX LTR_Gypsy 1154798 1155307 46 + . . scaffold1154 GLEAN mRNA 1155101 1155487 0.449004 + . ID=CGI_10026209; scaffold1154 TRF Tandem_Repeat 1157720 1157755 72 + . . scaffold1155 GLEAN promoter 3580 4579 1 + . ID=CGI_10007788; scaffold1155 GLEAN mRNA 4580 7370 1 + . ID=CGI_10007788; scaffold1155 TRF Tandem_Repeat 5093 5137 81 + . . scaffold1155 GLEAN mRNA 10795 13306 1 - . ID=CGI_10007789; scaffold1155 GLEAN promoter 13307 14306 1 - . ID=CGI_10007789; scaffold1155 GLEAN mRNA 16292 18410 0.999925 - . ID=CGI_10007790; scaffold1155 TRF Tandem_Repeat 17336 17402 134 + . . scaffold1155 GLEAN promoter 18411 19410 0.999925 - . ID=CGI_10007790; scaffold1155 TRF Tandem_Repeat 21219 21265 94 + . . scaffold1155 GLEAN mRNA 22121 32325 1 - . ID=CGI_10007791; scaffold1155 GLEAN promoter 26555 27554 0.998855 + . ID=CGI_10007792; scaffold1155 GLEAN mRNA 27555 57884 0.998855 + . ID=CGI_10007792; scaffold1155 TRF Tandem_Repeat 30239 30309 115 + . . scaffold1155 GLEAN promoter 32326 33325 1 - . ID=CGI_10007791; scaffold1155 TRF Tandem_Repeat 36401 36538 66 + . . scaffold1155 TRF Tandem_Repeat 42945 43006 124 + . . scaffold1155 TRF Tandem_Repeat 44160 45286 1670 + . . scaffold1155 TRF Tandem_Repeat 54526 54583 91 + . . scaffold1155 TRF Tandem_Repeat 54526 54583 73 + . . scaffold1155 TRF Tandem_Repeat 54538 54583 65 + . . scaffold1155 TRF Tandem_Repeat 57046 57116 142 + . . scaffold1155 GLEAN promoter 64946 65945 0.999997 + . ID=CGI_10007793; scaffold1155 GLEAN mRNA 65946 68758 0.999997 + . ID=CGI_10007793; scaffold1155 GLEAN mRNA 72325 79716 0.999676 - . ID=CGI_10007794; scaffold1155 GLEAN promoter 79717 80716 0.999676 - . ID=CGI_10007794; scaffold1155 GLEAN promoter 80163 81162 0.999791 + . ID=CGI_10007795; scaffold1155 GLEAN mRNA 81163 84249 0.999791 + . ID=CGI_10007795; scaffold1155 GLEAN mRNA 86017 88703 1 - . ID=CGI_10007796; scaffold1155 GLEAN promoter 88704 89703 1 - . ID=CGI_10007796; scaffold1155 WUBlastX LINE_L2 89430 90029 200 - . . scaffold1155 WUBlastX LINE_L1-Tx1 90031 90834 98 + . . scaffold1155 TRF Tandem_Repeat 91044 91112 129 + . . scaffold1155 WUBlastX LINE_L2 91125 91754 48 - . . scaffold1155 WUBlastX LINE_L2 91227 92147 670 - . . scaffold1155 WUBlastX LINE_CR1 91227 92321 199 - . . scaffold1155 WUBlastX LINE_L2 92747 92956 20 - . . scaffold1155 TRF Tandem_Repeat 93834 93963 72 + . . scaffold1155 TRF Tandem_Repeat 94684 94793 57 + . . scaffold1155 WUBlastX LINE_RTE-X 99407 99628 42 - . . scaffold1155 WUBlastX LINE_RTE-X 99845 100018 23 - . . scaffold1155 WUBlastX LINE_RTE-X 100467 100619 35 - . . scaffold1155 WUBlastX LINE_RTE-X 100506 100619 61 - . . scaffold1155 WUBlastX LINE_RTE-X 100527 100682 28 - . . scaffold1155 WUBlastX LINE_RTE-BovB 101222 101566 53 - . . scaffold1155 WUBlastX LINE_Jockey 101327 101569 54 - . . scaffold1155 WUBlastX LINE_RTE-X 101360 101563 109 - . . scaffold1155 WUBlastX LINE_Jockey 101562 101591 23 - . . scaffold1155 WUBlastX LINE_L1 101593 101916 23 - . . scaffold1155 WUBlastX LINE_RTE-X 101650 101916 146 - . . scaffold1155 WUBlastX LINE_RTE-X 101921 102439 289 - . . scaffold1155 WUBlastX LINE_L1-Tx1 102483 102542 22 - . . scaffold1155 TRF Tandem_Repeat 103600 103642 86 + . . scaffold1155 TRF Tandem_Repeat 105212 105286 80 + . . scaffold1155 TRF Tandem_Repeat 106771 106806 72 + . . scaffold1155 TRF Tandem_Repeat 110511 110557 51 + . . scaffold1155 WUBlastX DNA_IS4EU 118410 118571 58 - . . scaffold1155 WUBlastX DNA_IS4EU 118446 118694 43 - . . scaffold1155 WUBlastX DNA_Kolobok-IS4 118446 118586 66 - . . scaffold1155 WUBlastX DNA_IS4EU 118998 119381 31 - . . scaffold1155 WUBlastX DNA_IS4EU 119007 119327 40 - . . scaffold1155 TRF Tandem_Repeat 122931 122985 110 + . . scaffold1155 TRF Tandem_Repeat 127115 127165 102 + . . scaffold1155 WUBlastX LINE_Penelope 135132 135485 71 + . . scaffold1155 WUBlastX LINE_Penelope 135135 135395 84 + . . scaffold1155 WUBlastX LTR_Gypsy 174636 174953 64 + . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 175138 175284 29 + . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 175290 175358 38 + . . scaffold1155 GLEAN promoter 175944 176943 1 + . ID=CGI_10007797; scaffold1155 GLEAN mRNA 176944 179855 1 + . ID=CGI_10007797; scaffold1155 GLEAN promoter 179232 180231 0.838121 + . ID=CGI_10007798; scaffold1155 GLEAN mRNA 180232 184015 0.838121 + . ID=CGI_10007798; scaffold1155 GLEAN mRNA 181086 181541 0.687557 - . ID=CGI_10007799; scaffold1155 GLEAN promoter 181542 182541 0.687557 - . ID=CGI_10007799; scaffold1155 WUBlastX LTR_Gypsy 183540 183689 26 + . . scaffold1155 WUBlastX LTR_Gypsy 183866 183943 22 + . . scaffold1155 WUBlastX LTR_Gypsy 184360 185016 275 + . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 184480 185022 481 + . . scaffold1155 WUBlastX LTR_Gypsy 184504 185178 326 + . . scaffold1155 WUBlastX LTR_Gypsy 185034 185531 134 + . . scaffold1155 WUBlastX LTR_Gypsy 185034 185456 299 + . . scaffold1155 WUBlastX DNA_hAT-Ac 187091 187552 86 + . . scaffold1155 WUBlastX DNA_hAT-Ac 187253 187579 230 + . . scaffold1155 WUBlastX DNA_hAT-Ac 187328 187636 81 + . . scaffold1155 WUBlastX DNA_hAT-Ac 187845 188069 85 + . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 188862 189041 40 + . . scaffold1155 WUBlastX LTR_Gypsy 188907 189020 59 + . . scaffold1155 WUBlastX LTR_Gypsy 188972 189271 73 + . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 189020 189271 99 + . . scaffold1155 WUBlastX LTR_Gypsy 189347 189451 20 + . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 189408 189671 111 + . . scaffold1155 WUBlastX LTR_Gypsy-Cigr 189408 189779 87 + . . scaffold1155 WUBlastX LTR_Gypsy 189847 190584 275 + . . scaffold1155 WUBlastX LTR_Gypsy 190574 191101 241 + . . scaffold1155 WUBlastX LTR_Gypsy 191137 191208 20 + . . scaffold1155 WUBlastX LTR_Gypsy 191146 191349 20 + . . scaffold1156 WUBlastX LINE_L1-Tx1 4173 4364 31 - . . scaffold1156 WUBlastX LINE_L1-Tx1 4215 4364 43 - . . scaffold1156 TRF Tandem_Repeat 9996 10049 99 + . . scaffold1156 WUBlastX LINE_L1-Tx1 13971 14567 89 - . . scaffold1156 WUBlastX LINE_L1-Tx1 14315 15247 134 - . . scaffold1156 WUBlastX LINE_L1-Tx1 14546 15832 251 - . . scaffold1156 TRF Tandem_Repeat 33081 33142 92 + . . scaffold1156 TRF Tandem_Repeat 36675 36747 121 + . . scaffold1156 TRF Tandem_Repeat 41879 41910 64 + . . scaffold1157 TRF Tandem_Repeat 24456 24508 106 + . . scaffold1157 TRF Tandem_Repeat 30104 30131 56 + . . scaffold1157 TRF Tandem_Repeat 35735 35787 106 + . . scaffold1157 WUBlastX LINE_L2 39643 40167 92 + . . scaffold1157 WUBlastX LINE_L2 39727 40188 133 + . . scaffold1157 WUBlastX LINE_RTE-X 39799 40167 211 + . . scaffold1157 WUBlastX LINE_RTE-BovB 40160 40456 35 + . . scaffold1157 WUBlastX LINE_L1 40160 40516 23 + . . scaffold1157 WUBlastX LINE_RTE-BovB 40178 40342 69 + . . scaffold1157 WUBlastX LINE_L1 40178 40375 40 + . . scaffold1157 WUBlastX LINE_RTE-X 40867 41235 130 + . . scaffold1157 WUBlastX LINE_RTE-X 40945 41202 145 + . . scaffold1157 WUBlastX LINE_RTE-X 41231 41698 92 + . . scaffold1157 WUBlastX LINE_RTE-X 41692 41964 69 + . . scaffold1157 WUBlastX LINE_RTE-X 41713 42102 24 + . . scaffold1157 TRF Tandem_Repeat 53975 54009 61 + . . scaffold1157 GLEAN promoter 61003 62002 0.589368 + . ID=CGI_10011208; scaffold1157 GLEAN mRNA 62003 63196 0.589368 + . ID=CGI_10011208; scaffold1157 TRF Tandem_Repeat 63382 63421 80 + . . scaffold1157 TRF Tandem_Repeat 63678 63715 76 + . . scaffold1157 GLEAN promoter 66231 67230 0.648106 + . ID=CGI_10011209; scaffold1157 GLEAN mRNA 67231 68339 0.648106 + . ID=CGI_10011209; scaffold1157 GLEAN mRNA 73616 88365 1 - . ID=CGI_10011210; scaffold1157 TRF Tandem_Repeat 76794 77216 605 + . . scaffold1157 TRF Tandem_Repeat 78981 79022 84 + . . scaffold1157 GLEAN promoter 87663 88662 1 + . ID=CGI_10011211; scaffold1157 GLEAN promoter 88366 89365 1 - . ID=CGI_10011210; scaffold1157 GLEAN mRNA 88663 89634 1 + . ID=CGI_10011211; scaffold1157 GLEAN promoter 88906 89905 0.999434 + . ID=CGI_10011212; scaffold1157 GLEAN mRNA 89906 133993 0.999434 + . ID=CGI_10011212; scaffold1157 TRF Tandem_Repeat 93318 93349 64 + . . scaffold1157 TRF Tandem_Repeat 93882 93921 71 + . . scaffold1157 TRF Tandem_Repeat 99563 99611 59 + . . scaffold1157 TRF Tandem_Repeat 112420 112529 170 + . . scaffold1157 TRF Tandem_Repeat 120082 120200 125 + . . scaffold1157 GLEAN mRNA 136958 155781 0.828616 - . ID=CGI_10011213; scaffold1157 GLEAN promoter 155782 156781 0.828616 - . ID=CGI_10011213; scaffold1157 WUBlastX LINE_RTE-X 162840 163220 62 + . . scaffold1157 WUBlastX LINE_RTE-X 162909 163295 100 + . . scaffold1157 TRF Tandem_Repeat 163324 163383 50 + . . scaffold1157 GLEAN promoter 173990 174989 0.999977 + . ID=CGI_10011214; scaffold1157 GLEAN mRNA 174990 179995 0.999977 + . ID=CGI_10011214; scaffold1157 TRF Tandem_Repeat 182925 182989 94 + . . scaffold1157 GLEAN promoter 187041 188040 0.990796 + . ID=CGI_10011215; scaffold1157 GLEAN mRNA 188041 188427 0.990796 + . ID=CGI_10011215; scaffold1157 GLEAN promoter 189305 190304 0.59015 + . ID=CGI_10011216; scaffold1157 GLEAN mRNA 190305 190706 0.59015 + . ID=CGI_10011216; scaffold1157 GLEAN promoter 192990 193989 0.999372 + . ID=CGI_10011217; scaffold1157 GLEAN mRNA 193990 194388 0.999372 + . ID=CGI_10011217; scaffold1157 GLEAN promoter 194033 195032 0.853698 + . ID=CGI_10011218; scaffold1157 GLEAN mRNA 195033 201875 0.853698 + . ID=CGI_10011218; scaffold1157 TRF Tandem_Repeat 198235 198272 76 + . . scaffold1157 TRF Tandem_Repeat 198302 198345 88 + . . scaffold1157 WUBlastX LINE_L2-Hydra 204855 205238 46 - . . scaffold1157 WUBlastX LINE_RTE-X 204942 205226 47 - . . scaffold1157 WUBlastX LINE_RTE-X 205247 206209 283 - . . scaffold1157 WUBlastX LINE_Jockey 205304 206389 127 - . . scaffold1157 GLEAN promoter 205927 206926 0.618241 + . ID=CGI_10011219; scaffold1157 WUBlastX LINE_L1-Tx1 206924 207049 20 - . . scaffold1157 GLEAN mRNA 206927 207331 0.618241 + . ID=CGI_10011219; scaffold1157 GLEAN mRNA 209617 209856 0.526561 - . ID=CGI_10011220; scaffold1157 GLEAN promoter 209857 210856 0.526561 - . ID=CGI_10011220; scaffold1157 TRF Tandem_Repeat 212334 212383 91 + . . scaffold1157 GLEAN mRNA 212503 240416 0.462871 - . ID=CGI_10011221; scaffold1157 TRF Tandem_Repeat 213762 213811 100 + . . scaffold1157 WUBlastX LINE_L2 216512 217384 403 - . . scaffold1157 TRF Tandem_Repeat 224869 224901 66 + . . scaffold1157 WUBlastX LINE_CR1-L2 228112 228279 44 - . . scaffold1157 WUBlastX LINE_L2 228771 228902 39 - . . scaffold1157 WUBlastX LINE_L2 228919 229182 34 - . . scaffold1157 WUBlastX LINE_CR1 228982 229176 80 - . . scaffold1157 WUBlastX LINE_L2 229084 229206 46 - . . scaffold1157 WUBlastX LINE_L2 229176 229319 29 - . . scaffold1157 TRF Tandem_Repeat 232369 232429 122 + . . scaffold1157 GLEAN promoter 240417 241416 0.462871 - . ID=CGI_10011221; scaffold1157 TRF Tandem_Repeat 242812 242910 96 + . . scaffold1157 GLEAN mRNA 244896 271306 0.922381 - . ID=CGI_10011222; scaffold1157 TRF Tandem_Repeat 247002 247059 80 + . . scaffold1157 TRF Tandem_Repeat 252376 252430 51 + . . scaffold1157 TRF Tandem_Repeat 252447 252484 51 + . . scaffold1157 TRF Tandem_Repeat 252447 252489 50 + . . scaffold1157 GLEAN promoter 264725 265724 1 + . ID=CGI_10011223; scaffold1157 GLEAN mRNA 265725 266472 1 + . ID=CGI_10011223; scaffold1157 GLEAN promoter 271307 272306 0.922381 - . ID=CGI_10011222; scaffold1157 TRF Tandem_Repeat 275994 276061 66 + . . scaffold1157 TRF Tandem_Repeat 278702 278736 70 + . . scaffold1157 GLEAN mRNA 284184 284903 1 - . ID=CGI_10011224; scaffold1157 GLEAN promoter 284904 285843 1 - . ID=CGI_10011224; scaffold1159 GLEAN promoter 1 269 0.593391 + . ID=CGI_10007971; scaffold1159 GLEAN mRNA 270 4827 0.593391 + . ID=CGI_10007971; scaffold1159 GLEAN promoter 31760 32759 0.964678 + . ID=CGI_10007972; scaffold1159 GLEAN mRNA 32760 42800 0.964678 + . ID=CGI_10007972; scaffold1159 GLEAN promoter 44754 45753 0.99913 + . ID=CGI_10007973; scaffold1159 GLEAN mRNA 45754 52405 0.99913 + . ID=CGI_10007973; scaffold1159 GLEAN promoter 62967 63966 0.999999 + . ID=CGI_10007974; scaffold1159 GLEAN mRNA 63967 71083 0.999999 + . ID=CGI_10007974; scaffold1159 TRF Tandem_Repeat 72724 72772 98 + . . scaffold1159 WUBlastX LTR_Gypsy-Cigr 76077 76139 39 - . . scaffold1159 WUBlastX LTR_Gypsy-Cigr 76077 76175 32 - . . scaffold1159 WUBlastX LTR_Gypsy 76221 79922 2529 - . . scaffold1159 WUBlastX LTR_Gypsy 79931 80020 36 - . . scaffold1159 WUBlastX LTR_ERV1 79955 80080 43 - . . scaffold1159 WUBlastX LTR_Gypsy 79979 80776 266 - . . scaffold1159 WUBlastX LTR_Gypsy 80465 80866 39 - . . scaffold1159 TRF Tandem_Repeat 89308 90610 1626 + . . scaffold1159 GLEAN promoter 95623 96622 1 + . ID=CGI_10007975; scaffold1159 TRF Tandem_Repeat 96334 96458 223 + . . scaffold1159 GLEAN mRNA 96623 101816 1 + . ID=CGI_10007975; scaffold1159 TRF Tandem_Repeat 97267 97621 379 + . . scaffold1159 TRF Tandem_Repeat 100465 100888 453 + . . scaffold1159 TRF Tandem_Repeat 100515 100888 565 + . . scaffold1159 TRF Tandem_Repeat 106078 106530 378 + . . scaffold1159 TRF Tandem_Repeat 106078 106620 429 + . . scaffold1159 TRF Tandem_Repeat 106161 106609 273 + . . scaffold1159 GLEAN mRNA 107660 130580 0.999351 - . ID=CGI_10007976; scaffold1159 TRF Tandem_Repeat 109423 111683 2651 + . . scaffold1159 TRF Tandem_Repeat 109423 111683 2973 + . . scaffold1159 TRF Tandem_Repeat 109423 111683 2991 + . . scaffold1159 TRF Tandem_Repeat 112997 113937 1248 + . . scaffold1159 TRF Tandem_Repeat 112998 113937 1137 + . . scaffold1159 TRF Tandem_Repeat 118395 118942 690 + . . scaffold1159 TRF Tandem_Repeat 122927 123249 290 + . . scaffold1159 TRF Tandem_Repeat 124065 124977 512 + . . scaffold1159 TRF Tandem_Repeat 125181 126173 1415 + . . scaffold1159 TRF Tandem_Repeat 126240 126717 282 + . . scaffold1159 GLEAN promoter 130581 131580 0.999351 - . ID=CGI_10007976; scaffold1159 GLEAN promoter 139710 140709 0.966335 + . ID=CGI_10007977; scaffold1159 GLEAN mRNA 140710 162801 0.966335 + . ID=CGI_10007977; scaffold1159 TRF Tandem_Repeat 150528 151759 1764 + . . scaffold1159 TRF Tandem_Repeat 155813 156008 338 + . . scaffold1159 TRF Tandem_Repeat 159431 159460 60 + . . scaffold1159 WUBlastX LINE_CR1 160374 160580 33 + . . scaffold1159 WUBlastX LINE_L2 160407 160583 60 + . . scaffold1159 WUBlastX LINE_L2 160410 160634 35 + . . scaffold1159 WUBlastX LINE_L2 160930 161028 24 + . . scaffold1159 WUBlastX LINE_L2 161360 161767 82 + . . scaffold1159 WUBlastX LINE_L2 161555 161920 54 + . . scaffold1159 WUBlastX LINE_L2 161555 161818 91 + . . scaffold1159 TRF Tandem_Repeat 183158 183201 52 + . . scaffold1159 TRF Tandem_Repeat 185320 185440 215 + . . scaffold1159 WUBlastX LINE_L1 191623 191874 48 + . . scaffold1159 WUBlastX LINE_L1-Tx1 191665 193950 248 + . . scaffold1159 WUBlastX LINE_L1-Tx1 192241 193365 251 + . . scaffold1159 WUBlastX LINE_L1 192766 193305 252 + . . scaffold1159 WUBlastX LINE_L1-Tx1 193626 194468 134 + . . scaffold1159 WUBlastX LINE_L1-Tx1 194744 195016 31 + . . scaffold116 GLEAN promoter 1 534 1 + . ID=CGI_10009407; scaffold116 GLEAN mRNA 535 6259 1 + . ID=CGI_10009407; scaffold116 GLEAN promoter 5674 6673 0.539822 + . ID=CGI_10009408; scaffold116 GLEAN mRNA 6674 18731 0.539822 + . ID=CGI_10009408; scaffold116 TRF Tandem_Repeat 13481 13532 59 + . . scaffold116 TRF Tandem_Repeat 21565 21593 51 + . . scaffold116 GLEAN promoter 26572 27571 0.999923 + . ID=CGI_10009409; scaffold116 GLEAN mRNA 27572 28507 0.999923 + . ID=CGI_10009409; scaffold116 WUBlastX LTR_Gypsy-Cigr 33794 34009 33 - . . scaffold116 GLEAN mRNA 33800 34222 1 - . ID=CGI_10009410; scaffold116 WUBlastX LTR_Gypsy 33911 34084 28 - . . scaffold116 GLEAN promoter 34223 35222 1 - . ID=CGI_10009410; scaffold116 GLEAN mRNA 34503 34832 0.733461 - . ID=CGI_10009411; scaffold116 WUBlastX LTR_Gypsy-Cigr 34587 34949 97 - . . scaffold116 WUBlastX LTR_Gypsy 34644 34946 117 - . . scaffold116 GLEAN promoter 34833 35832 0.733461 - . ID=CGI_10009411; scaffold116 WUBlastX LTR_Gypsy 41628 42320 34 - . . scaffold116 WUBlastX LTR_Gypsy 41751 42458 147 - . . scaffold116 GLEAN mRNA 42477 44007 1 - . ID=CGI_10009413; scaffold116 GLEAN promoter 44008 45007 1 - . ID=CGI_10009413; scaffold116 TRF Tandem_Repeat 61471 61574 199 + . . scaffold116 TRF Tandem_Repeat 62497 62588 184 + . . scaffold116 TRF Tandem_Repeat 66964 67065 195 + . . scaffold116 TRF Tandem_Repeat 67988 68072 161 + . . scaffold116 WUBlastX LINE_RTE-BovB 68107 68808 478 + . . scaffold116 WUBlastX LINE_RTE-BovB 68798 69610 151 + . . scaffold116 WUBlastX LINE_RTE-BovB 69048 69545 207 + . . scaffold116 WUBlastX LINE_RTE-BovB 69290 69625 248 + . . scaffold116 TRF Tandem_Repeat 73476 73508 66 + . . scaffold116 GLEAN promoter 82692 83691 1 + . ID=CGI_10009415; scaffold116 GLEAN mRNA 83692 86470 1 + . ID=CGI_10009415; scaffold116 GLEAN mRNA 99658 105379 1 - . ID=CGI_10009416; scaffold116 GLEAN promoter 105380 106379 1 - . ID=CGI_10009416; scaffold116 TRF Tandem_Repeat 113676 113734 118 + . . scaffold116 TRF Tandem_Repeat 116106 116168 126 + . . scaffold116 TRF Tandem_Repeat 128869 128899 62 + . . scaffold116 TRF Tandem_Repeat 131517 131579 126 + . . scaffold116 GLEAN promoter 132108 133107 0.648538 + . ID=CGI_10009417; scaffold116 GLEAN mRNA 133108 135972 0.648538 + . ID=CGI_10009417; scaffold116 TRF Tandem_Repeat 133523 133587 85 + . . scaffold116 TRF Tandem_Repeat 139158 139200 86 + . . scaffold116 GLEAN promoter 140121 141120 1 + . ID=CGI_10009418; scaffold116 GLEAN mRNA 141121 143489 1 + . ID=CGI_10009418; scaffold116 TRF Tandem_Repeat 143680 143709 60 + . . scaffold116 GLEAN promoter 152523 153522 0.648539 + . ID=CGI_10009419; scaffold116 GLEAN mRNA 153523 155497 0.648539 + . ID=CGI_10009419; scaffold116 WUBlastX LINE_CR1-L2 158787 159125 49 + . . scaffold116 WUBlastX LINE_CR1-L2 158868 159197 66 + . . scaffold116 TRF Tandem_Repeat 162977 163009 66 + . . scaffold116 GLEAN promoter 169977 170976 0.682394 + . ID=CGI_10009420; scaffold116 GLEAN mRNA 170977 179656 0.682394 + . ID=CGI_10009420; scaffold116 TRF Tandem_Repeat 175307 175361 85 + . . scaffold116 TRF Tandem_Repeat 178022 178285 395 + . . scaffold116 TRF Tandem_Repeat 181527 182586 1253 + . . scaffold116 TRF Tandem_Repeat 187859 187883 50 + . . scaffold116 WUBlastX LINE_L1-Tx1 192788 193408 83 - . . scaffold116 WUBlastX LINE_L1-Tx1 192893 193501 152 - . . scaffold116 WUBlastX LINE_L1-Tx1 193588 194115 54 - . . scaffold116 GLEAN mRNA 199454 222023 0.8905 - . ID=CGI_10009421; scaffold116 TRF Tandem_Repeat 200069 201417 644 + . . scaffold116 TRF Tandem_Repeat 200083 200998 258 + . . scaffold116 TRF Tandem_Repeat 200227 200699 389 + . . scaffold116 TRF Tandem_Repeat 204004 204162 282 + . . scaffold116 TRF Tandem_Repeat 205781 206215 692 + . . scaffold116 WUBlastX LINE_RTE-X 212216 212386 39 + . . scaffold116 WUBlastX LINE_RTE-X 212328 212651 68 + . . scaffold116 WUBlastX LINE_RTE-X 212436 212777 102 + . . scaffold116 WUBlastX LINE_RTE-X 212496 212747 109 + . . scaffold116 TRF Tandem_Repeat 215975 216457 462 + . . scaffold116 TRF Tandem_Repeat 215975 216524 482 + . . scaffold116 TRF Tandem_Repeat 215975 216524 469 + . . scaffold116 TRF Tandem_Repeat 216479 216560 92 + . . scaffold116 GLEAN promoter 222024 223023 0.8905 - . ID=CGI_10009421; scaffold116 GLEAN promoter 224599 225598 1 + . ID=CGI_10009422; scaffold116 GLEAN mRNA 225599 227550 1 + . ID=CGI_10009422; scaffold1160 GLEAN mRNA 227 487 0.729324 - . ID=CGI_10015335; scaffold1160 GLEAN promoter 488 1487 0.729324 - . ID=CGI_10015335; scaffold1160 WUBlastX LINE_RTE-X 582 1757 176 - . . scaffold1160 WUBlastX LINE_RTE-X 873 1757 210 - . . scaffold1160 WUBlastX LINE_Rex-Babar 1497 1850 27 - . . scaffold1160 WUBlastX LINE_Jockey 1888 1941 27 - . . scaffold1160 WUBlastX LINE_Proto2 1888 2004 25 - . . scaffold1160 WUBlastX LINE_R2 1891 2043 20 - . . scaffold1160 WUBlastX LINE_L1 2135 2203 23 - . . scaffold1160 GLEAN mRNA 8904 10021 0.937382 - . ID=CGI_10015336; scaffold1160 GLEAN promoter 10022 11021 0.937382 - . ID=CGI_10015336; scaffold1160 GLEAN mRNA 10272 11626 0.999712 - . ID=CGI_10015337; scaffold1160 GLEAN promoter 11627 12626 0.999712 - . ID=CGI_10015337; scaffold1160 GLEAN mRNA 11999 12525 0.981917 - . ID=CGI_10015338; scaffold1160 GLEAN promoter 12526 13525 0.981917 - . ID=CGI_10015338; scaffold1160 GLEAN promoter 26636 27635 1 + . ID=CGI_10015339; scaffold1160 TRF Tandem_Repeat 26965 27035 97 + . . scaffold1160 GLEAN promoter 27577 28576 0.995277 + . ID=CGI_10015340; scaffold1160 GLEAN mRNA 27636 27902 1 + . ID=CGI_10015339; scaffold1160 WUBlastX DNA_hAT-Tip100 28577 28834 89 + . . scaffold1160 GLEAN mRNA 28577 28954 0.995277 + . ID=CGI_10015340; scaffold1160 WUBlastX DNA_hAT-Tip100 28577 28897 75 + . . scaffold1160 GLEAN promoter 29463 30462 0.998151 + . ID=CGI_10015341; scaffold1160 GLEAN mRNA 30463 34129 0.998151 + . ID=CGI_10015341; scaffold1160 TRF Tandem_Repeat 31182 31234 61 + . . scaffold1160 TRF Tandem_Repeat 31182 31234 61 + . . scaffold1160 TRF Tandem_Repeat 39492 39521 60 + . . scaffold1160 GLEAN promoter 39620 40619 0.978033 + . ID=CGI_10015342; scaffold1160 GLEAN mRNA 40620 41780 0.978033 + . ID=CGI_10015342; scaffold1160 GLEAN mRNA 41955 43522 0.988674 - . ID=CGI_10015343; scaffold1160 GLEAN promoter 43523 44522 0.988674 - . ID=CGI_10015343; scaffold1160 GLEAN promoter 49706 50705 1 + . ID=CGI_10015344; scaffold1160 GLEAN mRNA 50706 61418 1 + . ID=CGI_10015344; scaffold1160 TRF Tandem_Repeat 56257 56413 269 + . . scaffold1160 TRF Tandem_Repeat 56271 56349 50 + . . scaffold1160 GLEAN mRNA 62521 67201 1 - . ID=CGI_10015345; scaffold1160 GLEAN promoter 67202 68201 1 - . ID=CGI_10015345; scaffold1160 GLEAN promoter 69140 70139 0.996819 + . ID=CGI_10015346; scaffold1160 GLEAN mRNA 70140 71312 0.996819 + . ID=CGI_10015346; scaffold1160 GLEAN promoter 73120 74119 0.986676 + . ID=CGI_10015347; scaffold1160 GLEAN mRNA 74120 74506 0.986676 + . ID=CGI_10015347; scaffold1160 GLEAN promoter 76633 77632 0.593383 + . ID=CGI_10015348; scaffold1160 GLEAN mRNA 77633 78433 0.593383 + . ID=CGI_10015348; scaffold1160 WUBlastX LTR_DIRS 105428 105565 21 - . . scaffold1160 WUBlastX LTR_DIRS 105549 105995 170 - . . scaffold1160 GLEAN mRNA 114601 121331 0.290577 - . ID=CGI_10015349; scaffold1160 WUBlastX DNA_hAT-Blackja 120703 120933 28 + . . scaffold1160 GLEAN promoter 121332 122331 0.290577 - . ID=CGI_10015349; scaffold1160 WUBlastX LTR_Gypsy 125832 126557 63 + . . scaffold1160 WUBlastX LTR_Gypsy 126045 126758 148 + . . scaffold1160 WUBlastX LTR_Gypsy 126063 126650 197 + . . scaffold1160 WUBlastX LTR_Gypsy 126869 127465 148 + . . scaffold1160 WUBlastX LTR_Gypsy 126992 129181 1448 + . . scaffold1160 WUBlastX LTR_Gypsy 127382 130867 2109 + . . scaffold1160 WUBlastX LINE_L1-Tx1 133139 133258 34 - . . scaffold1160 WUBlastX LINE_RTE-X 133829 134017 30 - . . scaffold1160 WUBlastX LINE_L2 133880 134104 69 - . . scaffold1160 WUBlastX LINE_RTE-X 134022 134321 88 - . . scaffold1160 WUBlastX LINE_RTE-BovB 134022 134246 99 - . . scaffold1160 WUBlastX LINE_RTE-BovB 134046 134378 75 - . . scaffold1160 WUBlastX LINE_Proto2 134413 134547 20 - . . scaffold1160 WUBlastX LTR_Gypsy-Cigr 134642 134932 62 - . . scaffold1160 WUBlastX LTR_Gypsy 134690 134932 68 - . . scaffold1160 TRF Tandem_Repeat 135481 135595 198 + . . scaffold1160 TRF Tandem_Repeat 135937 135996 95 + . . scaffold1160 TRF Tandem_Repeat 139052 139087 51 + . . scaffold1160 TRF Tandem_Repeat 141201 141262 90 + . . scaffold1160 WUBlastX LINE_RTE-X 144967 145311 63 - . . scaffold1160 WUBlastX LINE_RTE-X 145069 145569 144 - . . scaffold1160 WUBlastX LINE_Penelope 148658 149038 97 + . . scaffold1160 TRF Tandem_Repeat 149536 149576 82 + . . scaffold1160 TRF Tandem_Repeat 152173 152264 66 + . . scaffold1160 TRF Tandem_Repeat 152186 152257 63 + . . scaffold1160 TRF Tandem_Repeat 152213 152241 58 + . . scaffold1160 WUBlastX LTR_Gypsy-Cigr 160307 160348 27 - . . scaffold1160 WUBlastX LTR_Gypsy 160310 160447 21 - . . scaffold1160 WUBlastX LTR_Gypsy 160372 160896 67 - . . scaffold1160 WUBlastX LTR_Gypsy 160468 160890 189 - . . scaffold1160 WUBlastX LTR_Gypsy 160606 160890 204 - . . scaffold1160 WUBlastX LTR_Gypsy 160869 161372 324 - . . scaffold1160 WUBlastX LTR_Gypsy-Cigr 161338 161772 220 - . . scaffold1160 WUBlastX LTR_Gypsy 161338 161922 98 - . . scaffold1160 WUBlastX LTR_Gypsy 161338 162303 95 - . . scaffold1160 WUBlastX LTR_Gypsy 162100 162411 111 - . . scaffold1160 WUBlastX LTR_Gypsy 162818 162976 26 - . . scaffold1160 WUBlastX LTR_Gypsy 162994 163242 33 - . . scaffold1160 TRF Tandem_Repeat 165792 166069 263 + . . scaffold1160 TRF Tandem_Repeat 165810 166069 441 + . . scaffold1160 TRF Tandem_Repeat 173099 173205 142 + . . scaffold1160 TRF Tandem_Repeat 173967 174040 148 + . . scaffold1160 TRF Tandem_Repeat 176311 176346 72 + . . scaffold1160 WUBlastX LINE_L2 176799 177065 29 - . . scaffold1160 TRF Tandem_Repeat 180940 180995 112 + . . scaffold1160 TRF Tandem_Repeat 194788 194878 161 + . . scaffold1160 WUBlastX LTR_Gypsy 197129 197581 114 - . . scaffold1160 WUBlastX LTR_Gypsy 197222 198547 256 - . . scaffold1160 WUBlastX LTR_Gypsy 197978 199012 315 - . . scaffold1160 WUBlastX LTR_Gypsy 198531 199673 505 - . . scaffold1160 WUBlastX LTR_Gypsy 204703 204843 59 - . . scaffold1160 WUBlastX LTR_Gypsy 204794 205009 81 + . . scaffold1160 TRF Tandem_Repeat 205029 205076 55 + . . scaffold1160 TRF Tandem_Repeat 213009 213926 1079 + . . scaffold1160 WUBlastX LTR_Gypsy 222825 223085 23 - . . scaffold1160 WUBlastX LTR_Gypsy 222870 223232 36 - . . scaffold1160 WUBlastX LTR_Gypsy 222945 224906 1619 - . . scaffold1160 WUBlastX LTR_Gypsy 224739 224954 21 - . . scaffold1160 WUBlastX LTR_Gypsy 225035 225952 92 - . . scaffold1160 WUBlastX LTR_Gypsy 225236 226033 397 - . . scaffold1160 TRF Tandem_Repeat 230400 230435 72 + . . scaffold1160 GLEAN mRNA 232105 234647 0.999988 - . ID=CGI_10015350; scaffold1160 GLEAN promoter 234648 235647 0.999988 - . ID=CGI_10015350; scaffold1160 GLEAN promoter 235030 236029 0.776794 + . ID=CGI_10015351; scaffold1160 GLEAN mRNA 236030 236242 0.776794 + . ID=CGI_10015351; scaffold1160 GLEAN mRNA 239897 248278 0.999675 - . ID=CGI_10015352; scaffold1160 TRF Tandem_Repeat 240137 240319 233 + . . scaffold1160 GLEAN promoter 248279 249278 0.999675 - . ID=CGI_10015352; scaffold1160 TRF Tandem_Repeat 248753 248891 188 + . . scaffold1160 TRF Tandem_Repeat 249468 249542 132 + . . scaffold1160 TRF Tandem_Repeat 250697 250753 114 + . . scaffold1160 GLEAN mRNA 253181 264437 0.999999 - . ID=CGI_10015353; scaffold1160 WUBlastX LINE_RTE-X 260129 260698 133 + . . scaffold1160 WUBlastX LINE_RTE-X 260141 260968 91 + . . scaffold1160 WUBlastX LINE_RTE-X 262210 262947 131 + . . scaffold1160 TRF Tandem_Repeat 263297 263355 118 + . . scaffold1160 GLEAN promoter 264438 265437 0.999999 - . ID=CGI_10015353; scaffold1160 TRF Tandem_Repeat 266019 266227 172 + . . scaffold1160 TRF Tandem_Repeat 266039 266251 236 + . . scaffold1160 GLEAN promoter 266474 267473 1 + . ID=CGI_10015354; scaffold1160 GLEAN mRNA 267474 273461 1 + . ID=CGI_10015354; scaffold1160 GLEAN mRNA 277069 288283 0.999945 - . ID=CGI_10015355; scaffold1160 TRF Tandem_Repeat 285816 285878 126 + . . scaffold1160 GLEAN promoter 288284 289283 0.999945 - . ID=CGI_10015355; scaffold1160 TRF Tandem_Repeat 291379 291506 204 + . . scaffold1160 TRF Tandem_Repeat 299155 299311 170 + . . scaffold1160 GLEAN promoter 302267 303266 0.328162 + . ID=CGI_10015356; scaffold1160 GLEAN mRNA 303267 309308 0.328162 + . ID=CGI_10015356; scaffold1160 GLEAN mRNA 310443 324508 0.999351 - . ID=CGI_10015357; scaffold1160 GLEAN promoter 324509 325508 0.999351 - . ID=CGI_10015357; scaffold1160 GLEAN promoter 332996 333995 0.999949 + . ID=CGI_10015358; scaffold1160 GLEAN mRNA 333996 340845 0.999949 + . ID=CGI_10015358; scaffold1160 GLEAN mRNA 342791 343123 0.990832 - . ID=CGI_10015359; scaffold1160 GLEAN promoter 343124 344123 0.990832 - . ID=CGI_10015359; scaffold1160 GLEAN promoter 345241 346240 0.989896 + . ID=CGI_10015360; scaffold1160 GLEAN mRNA 346241 390372 0.989896 + . ID=CGI_10015360; scaffold1160 TRF Tandem_Repeat 353030 353074 90 + . . scaffold1160 WUBlastX DNA_Sola 361213 363072 571 - . . scaffold1160 TRF Tandem_Repeat 371134 371175 57 + . . scaffold1160 TRF Tandem_Repeat 379454 379519 51 + . . scaffold1160 TRF Tandem_Repeat 381290 381353 65 + . . scaffold1160 TRF Tandem_Repeat 381304 381350 58 + . . scaffold1160 TRF Tandem_Repeat 381530 381615 82 + . . scaffold1160 TRF Tandem_Repeat 381530 381626 68 + . . scaffold1160 TRF Tandem_Repeat 382140 382175 72 + . . scaffold1160 TRF Tandem_Repeat 388408 388441 68 + . . scaffold1160 TRF Tandem_Repeat 390841 391000 311 + . . scaffold1160 TRF Tandem_Repeat 398572 398913 459 + . . scaffold1160 GLEAN mRNA 402898 403811 0.648475 - . ID=CGI_10015361; scaffold1160 GLEAN promoter 403812 404811 0.648475 - . ID=CGI_10015361; scaffold1160 TRF Tandem_Repeat 404438 405468 373 + . . scaffold1160 WUBlastX LTR_DIRS 419383 419748 50 + . . scaffold1160 WUBlastX LTR_DIRS 419437 419745 84 + . . scaffold1160 WUBlastX LTR_DIRS 419766 419999 87 + . . scaffold1160 WUBlastX LTR_DIRS 420017 420595 108 + . . scaffold1160 WUBlastX LTR_DIRS 420035 420490 236 + . . scaffold1160 GLEAN promoter 421648 422647 0.593389 + . ID=CGI_10015362; scaffold1160 GLEAN mRNA 422648 425537 0.593389 + . ID=CGI_10015362; scaffold1161 GLEAN promoter 1 240 0.152065 + . ID=CGI_10002995; scaffold1161 GLEAN mRNA 241 19517 0.152065 + . ID=CGI_10002995; scaffold1161 TRF Tandem_Repeat 9384 9425 75 + . . scaffold1161 TRF Tandem_Repeat 10189 10237 98 + . . scaffold1161 WUBlastX LTR_Gypsy 22895 23683 556 + . . scaffold1161 WUBlastX LTR_Gypsy 23674 26073 2004 + . . scaffold1161 TRF Tandem_Repeat 31845 31882 58 + . . scaffold1161 TRF Tandem_Repeat 38931 38990 84 + . . scaffold1161 TRF Tandem_Repeat 38940 38999 93 + . . scaffold1161 TRF Tandem_Repeat 44622 45543 1340 + . . scaffold1161 TRF Tandem_Repeat 44622 45542 1300 + . . scaffold1161 TRF Tandem_Repeat 44622 45541 1340 + . . scaffold1161 GLEAN mRNA 57254 60479 0.998023 - . ID=CGI_10002996; scaffold1161 GLEAN promoter 60480 61388 0.998023 - . ID=CGI_10002996; scaffold1163 GLEAN mRNA 1426 1611 0.976111 - . ID=CGI_10009334; scaffold1163 GLEAN promoter 1612 2611 0.976111 - . ID=CGI_10009334; scaffold1163 TRF Tandem_Repeat 2665 2700 72 + . . scaffold1163 GLEAN mRNA 2731 12590 0.346111 - . ID=CGI_10009335; scaffold1163 GLEAN promoter 12591 13590 0.346111 - . ID=CGI_10009335; scaffold1163 WUBlastX LINE_L1 17272 17661 52 - . . scaffold1163 WUBlastX LINE_L1-Tx1 17347 17703 77 - . . scaffold1163 TRF Tandem_Repeat 29857 29911 101 + . . scaffold1163 TRF Tandem_Repeat 31020 31063 88 + . . scaffold1163 TRF Tandem_Repeat 34114 34166 106 + . . scaffold1163 TRF Tandem_Repeat 54985 55021 74 + . . scaffold1163 GLEAN promoter 56476 57475 1 + . ID=CGI_10009336; scaffold1163 GLEAN mRNA 57476 62632 1 + . ID=CGI_10009336; scaffold1163 GLEAN promoter 61785 62784 0.700848 + . ID=CGI_10009337; scaffold1163 GLEAN mRNA 62785 74343 0.700848 + . ID=CGI_10009337; scaffold1163 TRF Tandem_Repeat 75335 75379 90 + . . scaffold1163 GLEAN promoter 75665 76664 1 + . ID=CGI_10009338; scaffold1163 GLEAN mRNA 76665 83505 1 + . ID=CGI_10009338; scaffold1163 GLEAN promoter 83213 84212 1 + . ID=CGI_10009339; scaffold1163 GLEAN mRNA 84213 89781 1 + . ID=CGI_10009339; scaffold1163 TRF Tandem_Repeat 88539 88713 194 + . . scaffold1163 GLEAN mRNA 91763 95005 0.999996 - . ID=CGI_10009340; scaffold1163 TRF Tandem_Repeat 91769 92145 532 + . . scaffold1163 TRF Tandem_Repeat 91856 92074 74 + . . scaffold1163 GLEAN promoter 95006 96005 0.999996 - . ID=CGI_10009340; scaffold1163 TRF Tandem_Repeat 101146 103534 4103 + . . scaffold1163 GLEAN promoter 116003 117002 0.748903 + . ID=CGI_10009341; scaffold1163 GLEAN mRNA 117003 124809 0.748903 + . ID=CGI_10009341; scaffold1163 GLEAN mRNA 126409 129053 0.999544 - . ID=CGI_10009342; scaffold1163 GLEAN promoter 129054 130053 0.999544 - . ID=CGI_10009342; scaffold1163 GLEAN mRNA 129214 137011 0.99922 - . ID=CGI_10009343; scaffold1163 TRF Tandem_Repeat 129760 130100 343 + . . scaffold1163 TRF Tandem_Repeat 129760 130121 370 + . . scaffold1163 TRF Tandem_Repeat 131466 131807 461 + . . scaffold1163 TRF Tandem_Repeat 134051 134498 717 + . . scaffold1163 GLEAN promoter 137012 138011 0.99922 - . ID=CGI_10009343; scaffold1163 GLEAN promoter 137025 138024 0.999949 + . ID=CGI_10009344; scaffold1163 GLEAN mRNA 138025 145338 0.999949 + . ID=CGI_10009344; scaffold1163 TRF Tandem_Repeat 141255 141450 329 + . . scaffold1163 GLEAN mRNA 146541 154762 0.999777 - . ID=CGI_10009345; scaffold1163 GLEAN promoter 147643 148642 0.999994 + . ID=CGI_10009346; scaffold1163 TRF Tandem_Repeat 147752 147801 100 + . . scaffold1163 TRF Tandem_Repeat 147825 147878 54 + . . scaffold1163 GLEAN mRNA 148643 151926 0.999994 + . ID=CGI_10009346; scaffold1163 TRF Tandem_Repeat 149637 151841 3104 + . . scaffold1163 GLEAN promoter 154763 155762 0.999777 - . ID=CGI_10009345; scaffold1163 GLEAN promoter 155313 156312 1 + . ID=CGI_10009347; scaffold1163 GLEAN mRNA 156313 159913 1 + . ID=CGI_10009347; scaffold1163 GLEAN mRNA 165548 167953 0.997818 - . ID=CGI_10009348; scaffold1163 GLEAN promoter 167954 168953 0.997818 - . ID=CGI_10009348; scaffold1163 GLEAN mRNA 168121 179356 0.981214 - . ID=CGI_10009349; scaffold1163 TRF Tandem_Repeat 170967 171000 68 + . . scaffold1163 TRF Tandem_Repeat 172083 172125 86 + . . scaffold1163 GLEAN promoter 179357 180356 0.981214 - . ID=CGI_10009349; scaffold1163 GLEAN mRNA 181020 183431 1 - . ID=CGI_10009350; scaffold1163 GLEAN promoter 183432 184431 1 - . ID=CGI_10009350; scaffold1163 GLEAN mRNA 183718 207332 0.990122 - . ID=CGI_10009351; scaffold1163 TRF Tandem_Repeat 187014 187044 62 + . . scaffold1163 TRF Tandem_Repeat 187775 187820 76 + . . scaffold1163 WUBlastX LINE_L1 188657 189190 105 + . . scaffold1163 WUBlastX LINE_L1-Tx1 188744 189298 397 + . . scaffold1163 WUBlastX LINE_L1-Tx1 189235 191037 549 + . . scaffold1163 WUBlastX LINE_RTE-X 198290 198580 93 - . . scaffold1163 WUBlastX LINE_RTE-X 198380 198577 129 - . . scaffold1163 WUBlastX LINE_RTE-X 198389 198616 43 - . . scaffold1163 TRF Tandem_Repeat 199861 199898 76 + . . scaffold1163 WUBlastX LINE_RTE-BovB 200150 200284 28 + . . scaffold1163 WUBlastX LINE_RTE-BovB 200485 200787 21 + . . scaffold1163 TRF Tandem_Repeat 202986 203770 843 + . . scaffold1163 GLEAN promoter 207333 208332 0.990122 - . ID=CGI_10009351; scaffold1163 WUBlastX LINE_RTE-BovB 213936 214172 103 + . . scaffold1163 WUBlastX LINE_RTE-BovB 213966 214259 66 + . . scaffold1163 TRF Tandem_Repeat 215101 215132 64 + . . scaffold1163 GLEAN mRNA 215878 229308 0.999949 - . ID=CGI_10009352; scaffold1163 TRF Tandem_Repeat 216573 216610 76 + . . scaffold1163 GLEAN promoter 229309 229454 0.999949 - . ID=CGI_10009352; scaffold1164 WUBlastX LINE_L2 7833 7925 20 + . . scaffold1164 WUBlastX LINE_Jockey 8240 8593 92 + . . scaffold1164 WUBlastX LINE_RTE-X 8312 8596 182 + . . scaffold1164 WUBlastX LINE_RTE-X 8587 9180 264 + . . scaffold1164 WUBlastX LINE_RTE-X 9170 10033 75 + . . scaffold1164 WUBlastX LINE_RTE-X 9170 9403 81 + . . scaffold1164 WUBlastX LINE_RTE-X 9194 9499 76 + . . scaffold1164 WUBlastX LINE_RTE-X 9833 10195 48 + . . scaffold1164 GLEAN mRNA 12542 16024 1 - . ID=CGI_10012996; scaffold1164 GLEAN promoter 16025 17024 1 - . ID=CGI_10012996; scaffold1164 GLEAN mRNA 23254 39482 0.902831 - . ID=CGI_10012997; scaffold1164 TRF Tandem_Repeat 23546 23582 74 + . . scaffold1164 TRF Tandem_Repeat 31106 31139 68 + . . scaffold1164 TRF Tandem_Repeat 31340 31952 978 + . . scaffold1164 TRF Tandem_Repeat 32444 32875 686 + . . scaffold1164 GLEAN promoter 39483 40482 0.902831 - . ID=CGI_10012997; scaffold1164 TRF Tandem_Repeat 40383 40450 136 + . . scaffold1164 GLEAN promoter 41935 42934 0.99996 + . ID=CGI_10012998; scaffold1164 GLEAN mRNA 42935 48721 0.99996 + . ID=CGI_10012998; scaffold1164 TRF Tandem_Repeat 45208 45318 213 + . . scaffold1164 TRF Tandem_Repeat 58295 58345 102 + . . scaffold1164 WUBlastX DNA_Harbinger 71428 71865 256 + . . scaffold1164 WUBlastX DNA_Harbinger 72065 72316 81 - . . scaffold1164 WUBlastX LTR_Pao 72810 72881 20 - . . scaffold1164 WUBlastX DNA_Harbinger 72839 73495 100 + . . scaffold1164 WUBlastX DNA_Harbinger 72839 73216 112 + . . scaffold1164 WUBlastX LTR_Pao 73702 75030 712 - . . scaffold1164 WUBlastX LTR_Pao 74029 75300 563 - . . scaffold1164 WUBlastX LTR_Pao 74860 75417 81 - . . scaffold1164 WUBlastX LINE_L1 76193 76339 79 + . . scaffold1164 WUBlastX LINE_L1-Tx1 76317 77120 194 + . . scaffold1164 WUBlastX LINE_L1 77095 77190 22 + . . scaffold1164 WUBlastX LINE_L1-Tx1 77095 77175 34 + . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79005 79217 42 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79086 79217 47 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79107 79217 65 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79131 79217 80 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79134 79247 40 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79346 79435 54 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79346 79468 28 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79459 79560 45 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79533 79868 132 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79889 80086 44 - . . scaffold1164 WUBlastX DNA_TcMar-Tc1 79925 80122 56 - . . scaffold1164 WUBlastX DNA_Harbinger 82350 83006 108 + . . scaffold1164 WUBlastX DNA_Harbinger 82356 82712 131 + . . scaffold1164 TRF Tandem_Repeat 87541 87616 107 + . . scaffold1164 WUBlastX LINE_CR1-L2 87708 87803 35 - . . scaffold1164 WUBlastX LINE_CR1-L2 87833 87934 45 - . . scaffold1164 GLEAN mRNA 91892 93484 0.836235 - . ID=CGI_10012999; scaffold1164 WUBlastX LINE_L2 92552 92992 65 - . . scaffold1164 GLEAN promoter 93485 94484 0.836235 - . ID=CGI_10012999; scaffold1164 TRF Tandem_Repeat 96380 96473 116 + . . scaffold1164 TRF Tandem_Repeat 96380 96473 152 + . . scaffold1164 GLEAN mRNA 96829 101151 1 - . ID=CGI_10013000; scaffold1164 TRF Tandem_Repeat 97796 97839 88 + . . scaffold1164 GLEAN promoter 101152 102151 1 - . ID=CGI_10013000; scaffold1164 TRF Tandem_Repeat 102530 104022 2273 + . . scaffold1164 TRF Tandem_Repeat 104216 104262 76 + . . scaffold1164 GLEAN mRNA 109796 115847 0.862406 - . ID=CGI_10013001; scaffold1164 TRF Tandem_Repeat 112165 112206 84 + . . scaffold1164 TRF Tandem_Repeat 114499 114570 144 + . . scaffold1164 GLEAN promoter 115848 116847 0.862406 - . ID=CGI_10013001; scaffold1164 TRF Tandem_Repeat 117327 117531 198 + . . scaffold1164 TRF Tandem_Repeat 117327 117532 191 + . . scaffold1164 TRF Tandem_Repeat 118205 118444 112 + . . scaffold1164 GLEAN mRNA 119865 121184 0.99623 - . ID=CGI_10013002; scaffold1164 GLEAN promoter 121185 122184 0.99623 - . ID=CGI_10013002; scaffold1164 GLEAN mRNA 121835 134637 0.885916 - . ID=CGI_10013003; scaffold1164 GLEAN promoter 134638 135637 0.885916 - . ID=CGI_10013003; scaffold1164 GLEAN promoter 135447 136446 0.999676 + . ID=CGI_10013004; scaffold1164 GLEAN mRNA 136447 183186 0.999676 + . ID=CGI_10013004; scaffold1164 TRF Tandem_Repeat 158451 158827 410 + . . scaffold1164 TRF Tandem_Repeat 158474 158941 611 + . . scaffold1164 TRF Tandem_Repeat 158491 158941 434 + . . scaffold1164 TRF Tandem_Repeat 158583 158939 122 + . . scaffold1164 TRF Tandem_Repeat 158583 158939 335 + . . scaffold1164 TRF Tandem_Repeat 169886 170688 1170 + . . scaffold1164 TRF Tandem_Repeat 175224 175264 66 + . . scaffold1164 TRF Tandem_Repeat 180424 180494 88 + . . scaffold1164 TRF Tandem_Repeat 180424 180509 131 + . . scaffold1164 TRF Tandem_Repeat 180749 180786 76 + . . scaffold1164 TRF Tandem_Repeat 181220 181282 65 + . . scaffold1164 TRF Tandem_Repeat 189546 189657 100 + . . scaffold1164 TRF Tandem_Repeat 189546 189684 59 + . . scaffold1164 TRF Tandem_Repeat 197664 197751 85 + . . scaffold1164 TRF Tandem_Repeat 203309 203346 76 + . . scaffold1164 TRF Tandem_Repeat 205067 205120 108 + . . scaffold1164 TRF Tandem_Repeat 205120 205153 68 + . . scaffold1164 TRF Tandem_Repeat 209797 209841 90 + . . scaffold1164 TRF Tandem_Repeat 218455 219317 1174 + . . scaffold1164 GLEAN promoter 225017 226016 1 + . ID=CGI_10013005; scaffold1164 GLEAN mRNA 226017 227036 1 + . ID=CGI_10013005; scaffold1164 TRF Tandem_Repeat 228016 228079 121 + . . scaffold1164 TRF Tandem_Repeat 231876 231900 50 + . . scaffold1164 TRF Tandem_Repeat 231952 232009 66 + . . scaffold1164 GLEAN mRNA 234302 240646 1 - . ID=CGI_10013006; scaffold1164 GLEAN promoter 240025 241024 0.999979 + . ID=CGI_10013007; scaffold1164 GLEAN promoter 240647 241646 1 - . ID=CGI_10013006; scaffold1164 GLEAN mRNA 241025 247603 0.999979 + . ID=CGI_10013007; scaffold1164 TRF Tandem_Repeat 244635 244671 65 + . . scaffold1164 GLEAN mRNA 250987 268552 0.933838 - . ID=CGI_10013008; scaffold1164 TRF Tandem_Repeat 262473 262524 50 + . . scaffold1164 TRF Tandem_Repeat 262473 262524 68 + . . scaffold1164 GLEAN promoter 268553 269552 0.933838 - . ID=CGI_10013008; scaffold1164 GLEAN mRNA 271946 272358 1 - . ID=CGI_10013009; scaffold1164 GLEAN promoter 272359 273358 1 - . ID=CGI_10013009; scaffold1164 TRF Tandem_Repeat 280419 280519 166 + . . scaffold1164 GLEAN mRNA 289759 299639 0.91066 - . ID=CGI_10013010; scaffold1164 TRF Tandem_Repeat 297233 297667 564 + . . scaffold1164 GLEAN promoter 299640 300639 0.91066 - . ID=CGI_10013010; scaffold1164 TRF Tandem_Repeat 305881 305944 128 + . . scaffold1164 GLEAN mRNA 307222 312085 0.957199 - . ID=CGI_10013011; scaffold1164 TRF Tandem_Repeat 308176 308253 149 + . . scaffold1164 WUBlastX LINE_L1 309294 309713 56 - . . scaffold1164 WUBlastX LINE_L1 309378 309803 23 - . . scaffold1164 WUBlastX LINE_L1-Tx1 309381 309674 97 - . . scaffold1164 WUBlastX LINE_L1-Tx1 309381 309737 67 - . . scaffold1164 GLEAN promoter 312086 313085 0.957199 - . ID=CGI_10013011; scaffold1164 GLEAN mRNA 321357 329338 0.958739 - . ID=CGI_10013012; scaffold1164 TRF Tandem_Repeat 325085 325132 69 + . . scaffold1164 GLEAN promoter 329339 330338 0.958739 - . ID=CGI_10013012; scaffold1164 GLEAN mRNA 330942 332583 1 - . ID=CGI_10013013; scaffold1164 GLEAN promoter 332462 333461 0.993907 + . ID=CGI_10013014; scaffold1164 GLEAN promoter 332584 333583 1 - . ID=CGI_10013013; scaffold1164 GLEAN mRNA 333462 335433 0.993907 + . ID=CGI_10013014; scaffold1164 TRF Tandem_Repeat 344043 344090 96 + . . scaffold1166 WUBlastX LINE_RTE-X 477 1001 95 - . . scaffold1166 WUBlastX LINE_RTE-X 594 920 120 - . . scaffold1166 WUBlastX LINE_RTE-X 1027 1140 28 - . . scaffold1166 WUBlastX LINE_RTE-X 1075 1140 28 - . . scaffold1166 WUBlastX DNA_MuDR 2209 2511 55 + . . scaffold1166 GLEAN promoter 3220 4219 0.883594 + . ID=CGI_10006284; scaffold1166 TRF Tandem_Repeat 3961 4092 104 + . . scaffold1166 GLEAN mRNA 4220 15993 0.883594 + . ID=CGI_10006284; scaffold1166 TRF Tandem_Repeat 9942 9988 85 + . . scaffold1166 WUBlastX LINE_CR1 13288 13353 23 - . . scaffold1166 WUBlastX LINE_RTE-X 13547 14914 401 - . . scaffold1166 GLEAN promoter 15644 16643 0.999993 + . ID=CGI_10006285; scaffold1166 GLEAN mRNA 16644 28103 0.999993 + . ID=CGI_10006285; scaffold1166 TRF Tandem_Repeat 23465 23516 88 + . . scaffold1166 TRF Tandem_Repeat 62093 62146 99 + . . scaffold1166 GLEAN promoter 63536 64535 0.988357 + . ID=CGI_10006286; scaffold1166 TRF Tandem_Repeat 63595 63640 92 + . . scaffold1166 GLEAN mRNA 64536 84545 0.988357 + . ID=CGI_10006286; scaffold1166 WUBlastX LTR_DIRS? 89380 89598 117 - . . scaffold1166 WUBlastX LTR_DIRS? 89597 90067 184 - . . scaffold1166 WUBlastX LTR_Ngaro 89708 90154 38 - . . scaffold1166 WUBlastX LTR_DIRS 90522 91631 402 - . . scaffold1166 WUBlastX LTR_DIRS 91618 91884 34 - . . scaffold1166 WUBlastX LTR_DIRS 91675 92187 334 - . . scaffold1166 WUBlastX LTR_DIRS 92199 92438 61 - . . scaffold1166 WUBlastX LTR_Gypsy 92491 92616 36 - . . scaffold1166 WUBlastX LTR_DIRS 92557 93168 161 - . . scaffold1166 WUBlastX LTR_Ngaro 110656 110916 125 - . . scaffold1166 WUBlastX LTR_Ngaro 110863 110973 75 - . . scaffold1166 WUBlastX LTR_Ngaro 110975 111319 53 - . . scaffold1166 WUBlastX LTR_Ngaro 111639 111677 22 - . . scaffold1166 WUBlastX LTR_Ngaro 111710 111970 74 - . . scaffold1166 GLEAN mRNA 115226 115597 0.998167 - . ID=CGI_10006287; scaffold1166 GLEAN promoter 115598 116597 0.998167 - . ID=CGI_10006287; scaffold1166 WUBlastX LINE_Penelope 120891 121487 40 - . . scaffold1166 WUBlastX LTR_Ngaro 124641 125267 70 - . . scaffold1166 TRF Tandem_Repeat 125949 125999 102 + . . scaffold1166 WUBlastX LTR_Ngaro 126107 126223 20 - . . scaffold1166 WUBlastX LTR_Ngaro 126208 126402 51 - . . scaffold1166 WUBlastX LTR_Ngaro 126445 127119 131 - . . scaffold1166 WUBlastX LTR_Ngaro 126535 127086 532 - . . scaffold1166 WUBlastX LTR_Ngaro 127153 127410 57 - . . scaffold1166 WUBlastX LTR_Ngaro 127424 127594 43 - . . scaffold1166 WUBlastX LTR_Ngaro 127593 127811 37 - . . scaffold1166 TRF Tandem_Repeat 128297 128509 65 + . . scaffold1166 TRF Tandem_Repeat 128323 128814 205 + . . scaffold1166 TRF Tandem_Repeat 128397 128818 229 + . . scaffold1166 TRF Tandem_Repeat 128397 128792 178 + . . scaffold1166 TRF Tandem_Repeat 128545 128792 158 + . . scaffold1166 WUBlastX LTR_Ngaro 133311 133379 24 - . . scaffold1166 WUBlastX LTR_Ngaro 133493 134041 29 - . . scaffold1166 WUBlastX LTR_Ngaro 133586 134041 39 - . . scaffold1166 WUBlastX LTR_Ngaro 133712 134035 87 - . . scaffold1166 WUBlastX LTR_Ngaro 133718 134122 56 - . . scaffold1166 WUBlastX LTR_Ngaro 134242 134415 28 - . . scaffold1166 WUBlastX DNA_TcMar-Tc1 135445 135600 31 + . . scaffold1166 WUBlastX DNA_TcMar-Tc1 135469 136083 108 + . . scaffold1166 WUBlastX DNA_TcMar-Tc1 136076 136327 90 + . . scaffold1166 WUBlastX DNA_TcMar-Tc1 136076 136288 103 + . . scaffold1166 WUBlastX DNA_TcMar-Tc1 136305 136361 28 + . . scaffold1166 TRF Tandem_Repeat 140233 140320 99 + . . scaffold1167 WUBlastX LTR_Gypsy 60 1037 1062 - . . scaffold1168 GLEAN mRNA 1470 2183 0.996819 - . ID=CGI_10001164; scaffold1168 GLEAN promoter 2184 3183 0.996819 - . ID=CGI_10001164; scaffold117 GLEAN mRNA 2159 2509 1 - . ID=CGI_10016951; scaffold117 GLEAN promoter 2510 3509 1 - . ID=CGI_10016951; scaffold117 WUBlastX LINE_L1-Tx1 4600 4890 35 - . . scaffold117 WUBlastX LINE_L1 4812 5081 45 - . . scaffold117 WUBlastX LINE_L1 4860 5072 81 - . . scaffold117 WUBlastX LINE_L1-Tx1 4893 5402 146 - . . scaffold117 WUBlastX LINE_L1-Tx1 5428 6363 389 - . . scaffold117 WUBlastX LINE_L1-Tx1 6426 7322 553 - . . scaffold117 WUBlastX LINE_CR1-L2 7877 8416 119 - . . scaffold117 WUBlastX LINE_L2 8293 9195 207 - . . scaffold117 WUBlastX LINE_CR1-L2 8431 9195 444 - . . scaffold117 WUBlastX LINE_L1-Tx1 9188 9646 140 - . . scaffold117 WUBlastX LINE_L1-Tx1 9624 10097 252 - . . scaffold117 GLEAN promoter 14674 15673 1 + . ID=CGI_10016952; scaffold117 GLEAN mRNA 15674 20212 1 + . ID=CGI_10016952; scaffold117 GLEAN promoter 25213 26212 0.501958 + . ID=CGI_10016953; scaffold117 GLEAN mRNA 26213 62337 0.501958 + . ID=CGI_10016953; scaffold117 WUBlastX LINE_L2 28262 28414 20 + . . scaffold117 WUBlastX LINE_L2 28396 28626 23 + . . scaffold117 TRF Tandem_Repeat 29826 29875 100 + . . scaffold117 TRF Tandem_Repeat 34054 34107 108 + . . scaffold117 WUBlastX DNA_Harbinger 36689 37099 202 - . . scaffold117 WUBlastX DNA_Harbinger 37096 37284 26 - . . scaffold117 WUBlastX DNA_Harbinger 37174 37359 70 - . . scaffold117 WUBlastX DNA_Harbinger 37591 37782 44 - . . scaffold117 TRF Tandem_Repeat 46830 46921 66 + . . scaffold117 WUBlastX LINE_CR1 51521 52066 35 + . . scaffold117 WUBlastX LINE_CR1 51614 52027 217 + . . scaffold117 WUBlastX LINE_CR1 51710 52060 253 + . . scaffold117 WUBlastX LINE_CR1 52014 52403 176 + . . scaffold117 WUBlastX LINE_CR1 53122 53256 49 + . . scaffold117 WUBlastX LINE_CR1 53134 53238 53 + . . scaffold117 WUBlastX LINE_CR1 53134 53319 45 + . . scaffold117 WUBlastX LINE_L2 53292 53525 32 + . . scaffold117 WUBlastX LINE_L2 53394 53564 21 + . . scaffold117 WUBlastX LINE_L2 53615 53998 57 + . . scaffold117 WUBlastX LINE_L2 53687 53989 75 + . . scaffold117 WUBlastX LINE_CR1 53753 53992 93 + . . scaffold117 WUBlastX LINE_CR1 53825 53983 113 + . . scaffold117 WUBlastX LINE_CR1 53831 54082 105 + . . scaffold117 WUBlastX LINE_CR1 53849 53989 115 + . . scaffold117 TRF Tandem_Repeat 59363 60043 853 + . . scaffold117 TRF Tandem_Repeat 61227 61956 1016 + . . scaffold117 TRF Tandem_Repeat 61252 61953 1122 + . . scaffold117 GLEAN promoter 65674 66673 0.856569 + . ID=CGI_10016954; scaffold117 GLEAN mRNA 66674 86294 0.856569 + . ID=CGI_10016954; scaffold117 TRF Tandem_Repeat 73091 74262 1720 + . . scaffold117 TRF Tandem_Repeat 75152 75250 92 + . . scaffold117 TRF Tandem_Repeat 75152 75249 81 + . . scaffold117 TRF Tandem_Repeat 77739 78340 1057 + . . scaffold117 TRF Tandem_Repeat 78856 78907 104 + . . scaffold117 TRF Tandem_Repeat 81830 82242 266 + . . scaffold117 TRF Tandem_Repeat 85906 85944 62 + . . scaffold117 GLEAN promoter 92505 93504 0.993969 + . ID=CGI_10016955; scaffold117 GLEAN mRNA 93505 105666 0.993969 + . ID=CGI_10016955; scaffold117 TRF Tandem_Repeat 95286 95343 80 + . . scaffold117 TRF Tandem_Repeat 95290 95343 72 + . . scaffold117 GLEAN promoter 111129 112128 0.7807 + . ID=CGI_10016956; scaffold117 GLEAN mRNA 112129 123081 0.7807 + . ID=CGI_10016956; scaffold117 TRF Tandem_Repeat 154233 154270 62 + . . scaffold117 GLEAN promoter 160872 161871 0.981681 + . ID=CGI_10016957; scaffold117 GLEAN mRNA 161872 170510 0.981681 + . ID=CGI_10016957; scaffold117 GLEAN promoter 170392 171391 0.992307 + . ID=CGI_10016958; scaffold117 GLEAN mRNA 171392 171616 0.992307 + . ID=CGI_10016958; scaffold117 TRF Tandem_Repeat 171894 171931 69 + . . scaffold117 TRF Tandem_Repeat 173517 173559 86 + . . scaffold117 TRF Tandem_Repeat 176409 176478 88 + . . scaffold117 TRF Tandem_Repeat 177880 177915 72 + . . scaffold117 TRF Tandem_Repeat 179059 179091 66 + . . scaffold117 TRF Tandem_Repeat 179310 179384 150 + . . scaffold117 TRF Tandem_Repeat 187723 187759 74 + . . scaffold117 GLEAN promoter 211661 212660 0.651137 + . ID=CGI_10016959; scaffold117 GLEAN mRNA 212661 217892 0.651137 + . ID=CGI_10016959; scaffold117 TRF Tandem_Repeat 217645 217688 88 + . . scaffold117 GLEAN mRNA 217707 220009 0.999887 - . ID=CGI_10016960; scaffold117 GLEAN promoter 220010 221009 0.999887 - . ID=CGI_10016960; scaffold117 GLEAN promoter 232426 233425 0.648025 + . ID=CGI_10016961; scaffold117 GLEAN mRNA 233426 248341 0.648025 + . ID=CGI_10016961; scaffold117 GLEAN mRNA 235981 238805 1 - . ID=CGI_10016962; scaffold117 TRF Tandem_Repeat 238221 238263 86 + . . scaffold117 TRF Tandem_Repeat 238686 238734 55 + . . scaffold117 GLEAN promoter 238806 239805 1 - . ID=CGI_10016962; scaffold117 TRF Tandem_Repeat 242379 242444 51 + . . scaffold117 TRF Tandem_Repeat 242379 242444 87 + . . scaffold117 TRF Tandem_Repeat 242382 242444 81 + . . scaffold117 TRF Tandem_Repeat 242386 242445 57 + . . scaffold117 WUBlastX DNA_Kolobok 245003 245308 144 + . . scaffold117 WUBlastX DNA_Kolobok 245737 245979 136 + . . scaffold117 WUBlastX DNA_Kolobok 246458 246673 62 + . . scaffold117 WUBlastX DNA_Kolobok 246977 247213 72 + . . scaffold117 WUBlastX DNA_Kolobok 247390 247662 81 - . . scaffold117 WUBlastX DNA_Kolobok 247701 247835 33 - . . scaffold117 TRF Tandem_Repeat 255335 255371 74 + . . scaffold117 TRF Tandem_Repeat 255862 255928 80 + . . scaffold117 TRF Tandem_Repeat 257319 257361 86 + . . scaffold117 WUBlastX LINE_L2 263872 263973 22 - . . scaffold117 WUBlastX LINE_RTE-X 264801 266828 284 - . . scaffold117 WUBlastX LINE_RTE-X 264867 267260 229 - . . scaffold117 WUBlastX LINE_Proto2 265551 267629 182 - . . scaffold117 TRF Tandem_Repeat 268225 268324 128 + . . scaffold117 TRF Tandem_Repeat 273387 273428 66 + . . scaffold117 WUBlastX DNA_Crypton 276281 276541 57 + . . scaffold117 GLEAN mRNA 279062 289645 0.406248 - . ID=CGI_10016963; scaffold117 WUBlastX DNA_TcMar-Tc2 279237 279407 65 - . . scaffold117 TRF Tandem_Repeat 279782 279811 60 + . . scaffold117 TRF Tandem_Repeat 283406 283445 53 + . . scaffold117 TRF Tandem_Repeat 284123 285018 1109 + . . scaffold117 TRF Tandem_Repeat 284123 285018 1002 + . . scaffold117 TRF Tandem_Repeat 287866 287970 63 + . . scaffold117 TRF Tandem_Repeat 288291 288334 88 + . . scaffold117 GLEAN promoter 289646 290645 0.406248 - . ID=CGI_10016963; scaffold117 TRF Tandem_Repeat 291696 292213 547 + . . scaffold117 TRF Tandem_Repeat 291696 292214 591 + . . scaffold117 TRF Tandem_Repeat 291696 292214 549 + . . scaffold117 TRF Tandem_Repeat 292821 292845 50 + . . scaffold117 GLEAN promoter 294260 295259 0.24444 + . ID=CGI_10016964; scaffold117 GLEAN mRNA 295260 307029 0.24444 + . ID=CGI_10016964; scaffold117 TRF Tandem_Repeat 300971 301157 251 + . . scaffold117 WUBlastX LINE_RTE-X 315667 315798 54 + . . scaffold117 TRF Tandem_Repeat 317959 318084 207 + . . scaffold117 GLEAN promoter 319141 320140 0.498772 + . ID=CGI_10016965; scaffold117 GLEAN mRNA 320141 325141 0.498772 + . ID=CGI_10016965; scaffold117 WUBlastX LINE_Penelope 331473 332000 88 - . . scaffold117 WUBlastX LINE_Penelope 331548 332147 40 - . . scaffold117 GLEAN promoter 348911 349910 0.987606 + . ID=CGI_10016966; scaffold117 GLEAN mRNA 349911 351383 0.987606 + . ID=CGI_10016966; scaffold117 TRF Tandem_Repeat 351516 351790 169 + . . scaffold117 TRF Tandem_Repeat 351522 351783 130 + . . scaffold117 TRF Tandem_Repeat 351526 351723 154 + . . scaffold117 GLEAN mRNA 354523 361880 0.986806 - . ID=CGI_10016967; scaffold117 WUBlastX DNA_TcMar-Tc1 355991 356095 53 + . . scaffold117 GLEAN promoter 361881 362880 0.986806 - . ID=CGI_10016967; scaffold117 GLEAN mRNA 370919 377686 1 - . ID=CGI_10016968; scaffold117 GLEAN promoter 377687 378686 1 - . ID=CGI_10016968; scaffold117 GLEAN promoter 380424 381423 0.991601 + . ID=CGI_10016969; scaffold117 GLEAN mRNA 381424 383832 0.991601 + . ID=CGI_10016969; scaffold117 WUBlastX LTR_Gypsy 381802 382515 48 + . . scaffold117 WUBlastX LTR_Gypsy-Cigr 381940 382479 174 + . . scaffold117 WUBlastX LTR_Gypsy 381961 382707 102 + . . scaffold117 WUBlastX LTR_Gypsy 382663 383148 80 + . . scaffold117 WUBlastX LTR_Gypsy 382816 383238 100 + . . scaffold117 WUBlastX LTR_Gypsy 382840 383316 55 + . . scaffold117 WUBlastX LTR_Gypsy 382852 383589 32 + . . scaffold117 GLEAN mRNA 387362 387717 1 - . ID=CGI_10016970; scaffold117 GLEAN promoter 387718 388717 1 - . ID=CGI_10016970; scaffold117 GLEAN mRNA 393778 403342 0.777738 - . ID=CGI_10016971; scaffold117 GLEAN promoter 403343 404342 0.777738 - . ID=CGI_10016971; scaffold117 TRF Tandem_Repeat 405342 405895 790 + . . scaffold117 TRF Tandem_Repeat 405342 406975 1298 + . . scaffold117 TRF Tandem_Repeat 405342 406975 1856 + . . scaffold117 TRF Tandem_Repeat 406308 406985 910 + . . scaffold117 GLEAN mRNA 411387 421676 1 - . ID=CGI_10016972; scaffold117 TRF Tandem_Repeat 421182 421549 404 + . . scaffold117 GLEAN promoter 421677 422676 1 - . ID=CGI_10016972; scaffold117 TRF Tandem_Repeat 428814 428861 96 + . . scaffold117 GLEAN mRNA 431268 437820 0.529261 - . ID=CGI_10016973; scaffold117 GLEAN promoter 437821 438820 0.529261 - . ID=CGI_10016973; scaffold117 GLEAN promoter 440056 441055 0.996819 + . ID=CGI_10016974; scaffold117 GLEAN mRNA 441056 445222 0.996819 + . ID=CGI_10016974; scaffold117 TRF Tandem_Repeat 443246 443453 346 + . . scaffold117 TRF Tandem_Repeat 450671 450711 82 + . . scaffold117 GLEAN promoter 457022 458021 0.99795 + . ID=CGI_10016975; scaffold117 GLEAN mRNA 458022 469128 0.99795 + . ID=CGI_10016975; scaffold117 TRF Tandem_Repeat 461391 461440 100 + . . scaffold117 WUBlastX LINE_L1 471588 471680 22 + . . scaffold117 WUBlastX LINE_L1 471888 472088 73 + . . scaffold117 WUBlastX LINE_L1-Tx1 471906 472121 40 + . . scaffold117 WUBlastX LINE_L1-Tx1 472142 473353 92 + . . scaffold117 TRF Tandem_Repeat 481045 481194 284 + . . scaffold117 TRF Tandem_Repeat 486200 486229 51 + . . scaffold1171 GLEAN promoter 1 722 1 + . ID=CGI_10002854; scaffold1171 TRF Tandem_Repeat 423 475 106 + . . scaffold1171 GLEAN mRNA 723 1007 1 + . ID=CGI_10002854; scaffold1171 GLEAN mRNA 9181 9501 0.999372 - . ID=CGI_10002855; scaffold1171 GLEAN promoter 9502 10501 0.999372 - . ID=CGI_10002855; scaffold1171 GLEAN mRNA 9728 10012 0.999372 - . ID=CGI_10002856; scaffold1171 GLEAN promoter 10013 11012 0.999372 - . ID=CGI_10002856; scaffold1171 GLEAN promoter 11089 12088 0.989581 + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1-Tx1 11104 12018 160 + . . scaffold1171 WUBlastX LINE_CR1 11152 11829 200 + . . scaffold1171 GLEAN mRNA 12089 17698 0.989581 + . ID=CGI_10002857; scaffold1171 WUBlastX LINE_L1-Tx1 12442 12699 58 + . . scaffold1171 WUBlastX LINE_L1-Tx1 12481 12726 98 + . . scaffold1171 WUBlastX LINE_L1 12753 14243 296 + . . scaffold1171 WUBlastX LINE_L1-Tx1 13832 15685 351 + . . scaffold1171 WUBlastX LINE_L1-Tx1 16286 16510 23 + . . scaffold1171 WUBlastX LINE_L1-Tx1 16322 16627 47 + . . scaffold1171 WUBlastX LINE_L2 26441 26911 75 + . . scaffold1171 WUBlastX LINE_CR1-L2 26528 26911 117 + . . scaffold1171 TRF Tandem_Repeat 29641 29679 78 + . . scaffold1171 TRF Tandem_Repeat 30743 30779 74 + . . scaffold1171 TRF Tandem_Repeat 31729 31797 129 + . . scaffold1171 TRF Tandem_Repeat 32869 32898 51 + . . scaffold1171 TRF Tandem_Repeat 33839 33897 109 + . . scaffold1171 TRF Tandem_Repeat 35947 36005 100 + . . scaffold1171 WUBlastX LINE_L1-Tx1 36586 37026 80 + . . scaffold1171 WUBlastX LINE_L1-Tx1 36670 37017 103 + . . scaffold1171 WUBlastX LINE_L1-Tx1 36676 37170 33 + . . scaffold1171 TRF Tandem_Repeat 37903 37958 71 + . . scaffold1171 TRF Tandem_Repeat 37907 37960 63 + . . scaffold1171 WUBlastX LINE_L1-Tx1 40074 40571 33 + . . scaffold1171 WUBlastX LINE_L1-Tx1 40601 40948 24 + . . scaffold1171 GLEAN mRNA 42687 43197 1 - . ID=CGI_10002858; scaffold1171 GLEAN promoter 43198 44197 1 - . ID=CGI_10002858; scaffold1171 WUBlastX LINE_L2 44383 44757 43 - . . scaffold1171 WUBlastX LINE_L2 44443 45132 123 - . . scaffold1171 WUBlastX LINE_L2 44443 45294 64 - . . scaffold1171 WUBlastX LINE_L2 45182 45373 22 - . . scaffold1171 WUBlastX DNA_hAT-hATw 47463 48491 36 + . . scaffold1171 WUBlastX DNA_hAT-hATw 47790 48476 102 + . . scaffold1171 WUBlastX DNA_hAT-hATw 48375 49889 213 + . . scaffold1171 WUBlastX DNA_hAT-hATw 48693 49814 272 + . . scaffold1171 TRF Tandem_Repeat 57732 57775 61 + . . scaffold1171 TRF Tandem_Repeat 57732 57775 70 + . . scaffold1172 WUBlastX LTR_Gypsy 11802 12179 39 + . . scaffold1172 WUBlastX LTR_Gypsy 11946 13565 839 + . . scaffold1172 WUBlastX LTR_Gypsy 12321 15089 1987 + . . scaffold1172 WUBlastX LTR_Gypsy 15036 15101 27 + . . scaffold1172 WUBlastX LTR_Gypsy 15562 15606 20 + . . scaffold1172 WUBlastX LINE_RTE-X 16422 16658 69 - . . scaffold1172 WUBlastX LINE_L1 17343 17657 123 - . . scaffold1172 WUBlastX LINE_L1 17668 17748 32 - . . scaffold1172 GLEAN mRNA 19398 27693 1 - . ID=CGI_10006903; scaffold1172 GLEAN promoter 27094 28093 0.999949 + . ID=CGI_10006904; scaffold1172 GLEAN promoter 27694 28693 1 - . ID=CGI_10006903; scaffold1172 GLEAN mRNA 28094 37285 0.999949 + . ID=CGI_10006904; scaffold1172 TRF Tandem_Repeat 44014 44068 94 + . . scaffold1172 GLEAN mRNA 44529 51306 0.999903 - . ID=CGI_10006905; scaffold1172 TRF Tandem_Repeat 48057 48134 113 + . . scaffold1172 GLEAN promoter 51307 52306 0.999903 - . ID=CGI_10006905; scaffold1172 GLEAN promoter 52165 53164 0.941007 + . ID=CGI_10006906; scaffold1172 GLEAN mRNA 53165 59851 0.941007 + . ID=CGI_10006906; scaffold1172 GLEAN mRNA 64511 79779 1 - . ID=CGI_10006907; scaffold1172 TRF Tandem_Repeat 67175 67213 51 + . . scaffold1172 TRF Tandem_Repeat 67761 67793 66 + . . scaffold1172 TRF Tandem_Repeat 70765 71342 696 + . . scaffold1172 TRF Tandem_Repeat 72739 72763 50 + . . scaffold1172 TRF Tandem_Repeat 73209 73976 1335 + . . scaffold1172 TRF Tandem_Repeat 74146 74187 56 + . . scaffold1172 TRF Tandem_Repeat 74305 74752 772 + . . scaffold1172 TRF Tandem_Repeat 76250 76426 95 + . . scaffold1172 TRF Tandem_Repeat 77588 77629 84 + . . scaffold1172 GLEAN promoter 79780 80779 1 - . ID=CGI_10006907; scaffold1172 GLEAN promoter 82755 83754 0.88765 + . ID=CGI_10006908; scaffold1172 GLEAN mRNA 83755 96256 0.88765 + . ID=CGI_10006908; scaffold1172 TRF Tandem_Repeat 85540 85635 113 + . . scaffold1172 TRF Tandem_Repeat 87822 87913 139 + . . scaffold1172 TRF Tandem_Repeat 95595 95677 96 + . . scaffold1172 TRF Tandem_Repeat 95600 95672 98 + . . scaffold1172 WUBlastX DNA_IS4EU 122877 123074 89 + . . scaffold1172 WUBlastX DNA_IS4EU 123070 123297 103 + . . scaffold1172 WUBlastX DNA_IS4EU 123493 123570 28 + . . scaffold1172 GLEAN promoter 129831 130830 0.99998 + . ID=CGI_10006909; scaffold1172 GLEAN mRNA 130831 145007 0.99998 + . ID=CGI_10006909; scaffold1172 WUBlastX DNA_Kolobok 134147 134389 89 + . . scaffold1172 WUBlastX DNA_Kolobok 135333 135521 45 + . . scaffold1172 WUBlastX DNA_Kolobok 135381 135518 73 + . . scaffold1172 WUBlastX DNA_Kolobok 136337 136528 68 - . . scaffold1172 GLEAN mRNA 136358 137015 0.533411 - . ID=CGI_10006910; scaffold1172 WUBlastX DNA_Kolobok 136367 136552 85 - . . scaffold1172 GLEAN promoter 137016 138015 0.533411 - . ID=CGI_10006910; scaffold1172 TRF Tandem_Repeat 139394 139451 116 + . . scaffold1172 TRF Tandem_Repeat 143064 143109 92 + . . scaffold1172 TRF Tandem_Repeat 150890 150935 74 + . . scaffold1172 TRF Tandem_Repeat 153069 153435 471 + . . scaffold1172 TRF Tandem_Repeat 153069 153435 340 + . . scaffold1172 TRF Tandem_Repeat 153070 153435 489 + . . scaffold1172 TRF Tandem_Repeat 155300 155602 399 + . . scaffold1172 GLEAN promoter 158780 159779 0.544852 + . ID=CGI_10006911; scaffold1172 GLEAN mRNA 159780 162232 0.544852 + . ID=CGI_10006911; scaffold1173 GLEAN mRNA 2719 10046 0.998646 - . ID=CGI_10005743; scaffold1173 GLEAN promoter 10047 11046 0.998646 - . ID=CGI_10005743; scaffold1173 TRF Tandem_Repeat 10586 10646 115 + . . scaffold1173 GLEAN promoter 14851 15850 0.651135 + . ID=CGI_10005744; scaffold1173 GLEAN mRNA 15851 30336 0.651135 + . ID=CGI_10005744; scaffold1173 TRF Tandem_Repeat 17419 17509 164 + . . scaffold1173 TRF Tandem_Repeat 19128 19177 75 + . . scaffold1173 TRF Tandem_Repeat 19560 19603 88 + . . scaffold1173 TRF Tandem_Repeat 21038 21102 121 + . . scaffold1173 TRF Tandem_Repeat 42389 42508 213 + . . scaffold1173 TRF Tandem_Repeat 42988 43014 54 + . . scaffold1173 TRF Tandem_Repeat 44593 44806 179 + . . scaffold1173 GLEAN promoter 65584 66583 1 + . ID=CGI_10005745; scaffold1173 GLEAN mRNA 66584 69723 1 + . ID=CGI_10005745; scaffold1173 TRF Tandem_Repeat 67033 67088 71 + . . scaffold1173 TRF Tandem_Repeat 67037 67091 65 + . . scaffold1173 WUBlastX DNA_TcMar-m44 68376 69146 453 + . . scaffold1173 WUBlastX DNA_TcMar-m44 69445 69603 78 + . . scaffold1173 WUBlastX DNA_TcMar-m44 69460 69720 77 + . . scaffold1173 TRF Tandem_Repeat 70925 71433 569 + . . scaffold1173 GLEAN promoter 77701 78700 0.777801 + . ID=CGI_10005746; scaffold1173 GLEAN mRNA 78701 88003 0.777801 + . ID=CGI_10005746; scaffold1173 TRF Tandem_Repeat 85326 85381 58 + . . scaffold1173 TRF Tandem_Repeat 85326 85383 64 + . . scaffold1173 GLEAN mRNA 87229 104633 0.605033 - . ID=CGI_10005747; scaffold1173 TRF Tandem_Repeat 87709 87751 86 + . . scaffold1173 TRF Tandem_Repeat 92786 92890 119 + . . scaffold1173 WUBlastX LINE_Penelope 100093 100200 56 + . . scaffold1173 WUBlastX LINE_Penelope 100172 100672 129 + . . scaffold1173 TRF Tandem_Repeat 101025 101084 120 + . . scaffold1173 GLEAN promoter 104634 105633 0.605033 - . ID=CGI_10005747; scaffold1173 WUBlastX LTR_Gypsy 111903 111986 24 - . . scaffold1173 WUBlastX LTR_Gypsy 112072 112152 25 - . . scaffold1173 WUBlastX LTR_Gypsy 112242 112373 27 - . . scaffold1173 WUBlastX LTR_ERVK 112355 112498 25 - . . scaffold1173 WUBlastX LTR_Gypsy 112827 115133 1947 - . . scaffold1173 WUBlastX LTR_Gypsy 115223 116140 90 - . . scaffold1173 WUBlastX LTR_Gypsy 115424 116221 399 - . . scaffold1173 WUBlastX LTR_Gypsy 115649 116347 52 - . . scaffold1173 WUBlastX LTR_DIRS 120161 120367 86 + . . scaffold1173 TRF Tandem_Repeat 124560 124613 108 + . . scaffold1173 TRF Tandem_Repeat 132744 133525 759 + . . scaffold1174 GLEAN mRNA 788 24380 0.371819 - . ID=CGI_10026021; scaffold1174 GLEAN promoter 23600 24599 1 + . ID=CGI_10026022; scaffold1174 GLEAN promoter 24381 25380 0.371819 - . ID=CGI_10026021; scaffold1174 GLEAN mRNA 24600 26198 1 + . ID=CGI_10026022; scaffold1174 WUBlastX LINE_RTE-X 28365 28517 129 + . . scaffold1174 WUBlastX LINE_RTE-X 28520 29413 538 + . . scaffold1174 WUBlastX LINE_RTE-X 28520 29572 404 + . . scaffold1174 WUBlastX LINE_RTE-X 29458 30165 115 + . . scaffold1174 WUBlastX LINE_RTE-X 32118 32396 89 + . . scaffold1174 WUBlastX LINE_RTE-X 32118 32351 102 + . . scaffold1174 WUBlastX LINE_RTE-X 32396 33103 115 + . . scaffold1174 GLEAN mRNA 34818 43941 1 - . ID=CGI_10026023; scaffold1174 WUBlastX LINE_L1-Tx1 37143 38144 133 - . . scaffold1174 WUBlastX LINE_L1 38490 38582 20 - . . scaffold1174 GLEAN promoter 43942 44941 1 - . ID=CGI_10026023; scaffold1174 GLEAN mRNA 45963 47666 0.992428 - . ID=CGI_10026024; scaffold1174 GLEAN promoter 47667 48666 0.992428 - . ID=CGI_10026024; scaffold1174 GLEAN promoter 52150 53149 1 + . ID=CGI_10026025; scaffold1174 GLEAN mRNA 53150 65661 1 + . ID=CGI_10026025; scaffold1174 TRF Tandem_Repeat 65530 65598 59 + . . scaffold1174 TRF Tandem_Repeat 66653 66936 433 + . . scaffold1174 GLEAN mRNA 81061 81897 1 - . ID=CGI_10026026; scaffold1174 GLEAN promoter 81898 82897 1 - . ID=CGI_10026026; scaffold1174 TRF Tandem_Repeat 86530 86583 108 + . . scaffold1174 TRF Tandem_Repeat 86593 86621 58 + . . scaffold1174 TRF Tandem_Repeat 93405 93474 56 + . . scaffold1174 WUBlastX LTR_Gypsy 115249 115776 30 + . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 115429 116202 157 + . . scaffold1174 WUBlastX LTR_Gypsy 116253 116714 49 + . . scaffold1174 WUBlastX LTR_Gypsy 116337 116642 52 + . . scaffold1174 WUBlastX LTR_Gypsy 116406 119873 1664 + . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 117120 119957 2031 + . . scaffold1174 GLEAN promoter 121742 122741 0.527772 + . ID=CGI_10026027; scaffold1174 GLEAN mRNA 122742 144408 0.527772 + . ID=CGI_10026027; scaffold1174 WUBlastX LINE_CR1-L2 140519 141031 185 - . . scaffold1174 WUBlastX LINE_L2 141027 141218 58 - . . scaffold1174 WUBlastX LINE_LOA 141051 141251 27 - . . scaffold1174 WUBlastX LINE_CR1 141217 141258 20 - . . scaffold1174 TRF Tandem_Repeat 142997 143101 192 + . . scaffold1174 TRF Tandem_Repeat 157526 157720 194 + . . scaffold1174 TRF Tandem_Repeat 157526 157699 179 + . . scaffold1174 GLEAN promoter 157933 158932 0.920529 + . ID=CGI_10026028; scaffold1174 GLEAN mRNA 158933 163564 0.920529 + . ID=CGI_10026028; scaffold1174 GLEAN mRNA 165948 193006 0.453368 - . ID=CGI_10026029; scaffold1174 WUBlastX LINE_L1 169463 170149 95 + . . scaffold1174 WUBlastX LINE_L1 169577 170143 307 + . . scaffold1174 WUBlastX LINE_L1 169577 170299 200 + . . scaffold1174 WUBlastX LINE_L1-Tx1 170160 170654 108 + . . scaffold1174 WUBlastX LINE_L1-Tx1 170169 170567 145 + . . scaffold1174 WUBlastX LINE_L1-Tx1 170760 171128 47 + . . scaffold1174 WUBlastX LINE_L1-Tx1 171048 171233 31 + . . scaffold1174 TRF Tandem_Repeat 176989 177081 186 + . . scaffold1174 TRF Tandem_Repeat 177756 177789 68 + . . scaffold1174 TRF Tandem_Repeat 180283 180319 65 + . . scaffold1174 TRF Tandem_Repeat 185967 186024 98 + . . scaffold1174 TRF Tandem_Repeat 188020 188050 53 + . . scaffold1174 TRF Tandem_Repeat 189971 190037 127 + . . scaffold1174 TRF Tandem_Repeat 190214 190246 57 + . . scaffold1174 TRF Tandem_Repeat 190913 190972 50 + . . scaffold1174 GLEAN promoter 193007 194006 0.453368 - . ID=CGI_10026029; scaffold1174 GLEAN promoter 193540 194539 0.999351 + . ID=CGI_10026030; scaffold1174 GLEAN mRNA 194540 202648 0.999351 + . ID=CGI_10026030; scaffold1174 WUBlastX LINE_L1-Tx1 211941 212417 110 + . . scaffold1174 WUBlastX LINE_L1-Tx1 212037 213452 80 + . . scaffold1174 WUBlastX LINE_L1-Tx1 212040 213209 150 + . . scaffold1174 TRF Tandem_Repeat 217659 217726 109 + . . scaffold1174 TRF Tandem_Repeat 217893 217937 81 + . . scaffold1174 TRF Tandem_Repeat 235415 235464 75 + . . scaffold1174 GLEAN mRNA 241580 253987 0.484872 - . ID=CGI_10026031; scaffold1174 TRF Tandem_Repeat 243840 243872 57 + . . scaffold1174 TRF Tandem_Repeat 243872 243904 66 + . . scaffold1174 WUBlastX LINE_RTE-BovB 253947 254405 39 - . . scaffold1174 GLEAN promoter 253988 254987 0.484872 - . ID=CGI_10026031; scaffold1174 WUBlastX LINE_RTE-X 254022 255248 148 - . . scaffold1174 WUBlastX LINE_CR1-L2 254724 255425 112 - . . scaffold1174 WUBlastX LINE_RTE-X 254745 255248 155 - . . scaffold1174 WUBlastX LINE_Jockey 254832 255227 160 - . . scaffold1174 TRF Tandem_Repeat 257383 257438 78 + . . scaffold1174 TRF Tandem_Repeat 258174 258224 102 + . . scaffold1174 TRF Tandem_Repeat 258743 258795 106 + . . scaffold1174 TRF Tandem_Repeat 272952 273010 118 + . . scaffold1174 TRF Tandem_Repeat 275963 275988 52 + . . scaffold1174 TRF Tandem_Repeat 278509 278571 126 + . . scaffold1174 TRF Tandem_Repeat 281620 281662 86 + . . scaffold1174 TRF Tandem_Repeat 284271 284320 100 + . . scaffold1174 TRF Tandem_Repeat 296160 296204 90 + . . scaffold1174 GLEAN promoter 300937 301936 0.997053 + . ID=CGI_10026032; scaffold1174 GLEAN mRNA 301937 307169 0.997053 + . ID=CGI_10026032; scaffold1174 GLEAN promoter 308986 309985 0.651135 + . ID=CGI_10026033; scaffold1174 GLEAN mRNA 309986 315946 0.651135 + . ID=CGI_10026033; scaffold1174 TRF Tandem_Repeat 312208 312255 96 + . . scaffold1174 GLEAN promoter 325749 326748 0.947098 + . ID=CGI_10026034; scaffold1174 GLEAN mRNA 326749 338944 0.947098 + . ID=CGI_10026034; scaffold1174 TRF Tandem_Repeat 331740 331783 88 + . . scaffold1174 TRF Tandem_Repeat 345844 345886 77 + . . scaffold1174 TRF Tandem_Repeat 347404 347460 114 + . . scaffold1174 TRF Tandem_Repeat 347797 347938 97 + . . scaffold1174 GLEAN mRNA 351372 358101 1 - . ID=CGI_10026035; scaffold1174 TRF Tandem_Repeat 356659 356854 338 + . . scaffold1174 TRF Tandem_Repeat 356659 356854 346 + . . scaffold1174 GLEAN promoter 358102 359101 1 - . ID=CGI_10026035; scaffold1174 TRF Tandem_Repeat 364081 364134 108 + . . scaffold1174 TRF Tandem_Repeat 364186 364241 85 + . . scaffold1174 TRF Tandem_Repeat 375122 375177 112 + . . scaffold1174 TRF Tandem_Repeat 375886 375921 72 + . . scaffold1174 GLEAN mRNA 379416 392925 0.988892 - . ID=CGI_10026036; scaffold1174 TRF Tandem_Repeat 379889 379923 63 + . . scaffold1174 GLEAN promoter 392926 393925 0.988892 - . ID=CGI_10026036; scaffold1174 TRF Tandem_Repeat 393062 393155 125 + . . scaffold1174 TRF Tandem_Repeat 393894 393937 79 + . . scaffold1174 WUBlastX LINE_RTE-BovB 394104 394262 119 - . . scaffold1174 WUBlastX LINE_RTE-BovB 394116 394364 71 - . . scaffold1174 TRF Tandem_Repeat 401623 401726 145 + . . scaffold1174 GLEAN promoter 404012 405011 0.889915 + . ID=CGI_10026037; scaffold1174 GLEAN mRNA 405012 416668 0.889915 + . ID=CGI_10026037; scaffold1174 TRF Tandem_Repeat 405727 405764 76 + . . scaffold1174 TRF Tandem_Repeat 422779 422991 169 + . . scaffold1174 GLEAN mRNA 423032 424599 1 - . ID=CGI_10026038; scaffold1174 GLEAN promoter 423632 424631 0.99996 + . ID=CGI_10026039; scaffold1174 TRF Tandem_Repeat 424412 424450 78 + . . scaffold1174 GLEAN promoter 424600 425599 1 - . ID=CGI_10026038; scaffold1174 GLEAN mRNA 424632 427070 0.99996 + . ID=CGI_10026039; scaffold1174 GLEAN mRNA 428889 429125 0.618186 - . ID=CGI_10026040; scaffold1174 GLEAN promoter 429126 430125 0.618186 - . ID=CGI_10026040; scaffold1174 WUBlastX LINE_L1 430365 430784 32 + . . scaffold1174 WUBlastX LINE_L1-Tx1 430491 430772 52 + . . scaffold1174 WUBlastX LINE_L1-Tx1 430527 430859 32 + . . scaffold1174 WUBlastX LINE_L1-Tx1 430527 430763 63 + . . scaffold1174 TRF Tandem_Repeat 438110 438171 56 + . . scaffold1174 TRF Tandem_Repeat 438114 438166 54 + . . scaffold1174 WUBlastX LINE_CR1 440957 441013 28 - . . scaffold1174 GLEAN promoter 441102 442101 0.906 + . ID=CGI_10026041; scaffold1174 WUBlastX LINE_CR1 441896 441994 27 - . . scaffold1174 GLEAN mRNA 442102 451678 0.906 + . ID=CGI_10026041; scaffold1174 TRF Tandem_Repeat 445276 445342 71 + . . scaffold1174 TRF Tandem_Repeat 452052 452095 88 + . . scaffold1174 GLEAN promoter 452682 453681 0.651135 + . ID=CGI_10026042; scaffold1174 GLEAN mRNA 453682 463919 0.651135 + . ID=CGI_10026042; scaffold1174 GLEAN mRNA 455089 471884 0.340592 - . ID=CGI_10026043; scaffold1174 GLEAN promoter 465626 466625 0.5 + . ID=CGI_10026044; scaffold1174 TRF Tandem_Repeat 465632 465659 56 + . . scaffold1174 GLEAN mRNA 466626 467345 0.5 + . ID=CGI_10026044; scaffold1174 TRF Tandem_Repeat 469265 470052 490 + . . scaffold1174 TRF Tandem_Repeat 470146 470334 155 + . . scaffold1174 TRF Tandem_Repeat 470786 471955 455 + . . scaffold1174 GLEAN promoter 471885 472884 0.340592 - . ID=CGI_10026043; scaffold1174 WUBlastX LTR_Gypsy-Cigr 471985 472326 39 - . . scaffold1174 GLEAN promoter 472195 473194 0.999563 + . ID=CGI_10026045; scaffold1174 WUBlastX LTR_Gypsy 472313 472441 58 - . . scaffold1174 WUBlastX LTR_Gypsy 472337 472462 68 - . . scaffold1174 GLEAN mRNA 473195 473437 0.999563 + . ID=CGI_10026045; scaffold1174 WUBlastX LTR_Gypsy 475097 475654 32 - . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 475645 475785 53 - . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 476372 476527 24 - . . scaffold1174 WUBlastX LTR_Gypsy 476743 476901 34 - . . scaffold1174 WUBlastX LTR_Gypsy 477075 478070 78 - . . scaffold1174 WUBlastX LTR_Gypsy 477921 478151 84 - . . scaffold1174 WUBlastX LTR_Gypsy 477921 478082 91 - . . scaffold1174 WUBlastX LTR_Gypsy 478058 478186 54 - . . scaffold1174 WUBlastX LTR_Gypsy-Cigr 478117 478392 53 - . . scaffold1174 WUBlastX LTR_Gypsy 478219 478341 71 - . . scaffold1174 GLEAN mRNA 484216 492553 1 - . ID=CGI_10026046; scaffold1174 GLEAN promoter 490614 491613 1 + . ID=CGI_10026047; scaffold1174 GLEAN mRNA 491614 497295 1 + . ID=CGI_10026047; scaffold1174 GLEAN promoter 492554 493553 1 - . ID=CGI_10026046; scaffold1174 TRF Tandem_Repeat 502067 502166 146 + . . scaffold1174 TRF Tandem_Repeat 503755 503793 78 + . . scaffold1174 GLEAN promoter 503878 504877 1 + . ID=CGI_10026048; scaffold1174 GLEAN mRNA 504878 509638 1 + . ID=CGI_10026048; scaffold1174 GLEAN mRNA 515401 530529 0.999949 - . ID=CGI_10026049; scaffold1174 TRF Tandem_Repeat 520270 520300 53 + . . scaffold1174 TRF Tandem_Repeat 520298 520330 66 + . . scaffold1174 TRF Tandem_Repeat 521970 522008 78 + . . scaffold1174 TRF Tandem_Repeat 526773 527082 530 + . . scaffold1174 GLEAN promoter 530530 531529 0.999949 - . ID=CGI_10026049; scaffold1174 TRF Tandem_Repeat 538488 538522 61 + . . scaffold1174 GLEAN promoter 544122 545121 0.980072 + . ID=CGI_10026050; scaffold1174 GLEAN mRNA 545122 549156 0.980072 + . ID=CGI_10026050; scaffold1174 TRF Tandem_Repeat 550617 550664 60 + . . scaffold1174 GLEAN promoter 551643 552642 0.999675 + . ID=CGI_10026051; scaffold1174 GLEAN mRNA 552643 562871 0.999675 + . ID=CGI_10026051; scaffold1174 TRF Tandem_Repeat 557490 557545 94 + . . scaffold1174 GLEAN mRNA 564111 577029 0.607662 - . ID=CGI_10026052; scaffold1174 TRF Tandem_Repeat 570076 570121 76 + . . scaffold1174 TRF Tandem_Repeat 570852 570882 62 + . . scaffold1174 GLEAN promoter 577030 578029 0.607662 - . ID=CGI_10026052; scaffold1174 GLEAN mRNA 579847 584347 0.999702 - . ID=CGI_10026053; scaffold1174 GLEAN promoter 584348 585347 0.999702 - . ID=CGI_10026053; scaffold1174 GLEAN mRNA 584434 586898 1 - . ID=CGI_10026054; scaffold1174 TRF Tandem_Repeat 586042 586082 82 + . . scaffold1174 GLEAN promoter 586899 587898 1 - . ID=CGI_10026054; scaffold1174 GLEAN mRNA 588878 593457 1 - . ID=CGI_10026055; scaffold1174 TRF Tandem_Repeat 591630 591672 86 + . . scaffold1174 GLEAN promoter 593458 594457 1 - . ID=CGI_10026055; scaffold1174 GLEAN promoter 593910 594909 0.448847 + . ID=CGI_10026056; scaffold1174 GLEAN mRNA 594910 602611 0.448847 + . ID=CGI_10026056; scaffold1174 TRF Tandem_Repeat 598654 600073 2232 + . . scaffold1174 GLEAN mRNA 606419 627200 0.999621 - . ID=CGI_10026057; scaffold1174 GLEAN promoter 623506 624505 1 + . ID=CGI_10026058; scaffold1174 GLEAN mRNA 624506 626573 1 + . ID=CGI_10026058; scaffold1174 GLEAN promoter 627201 628200 0.999621 - . ID=CGI_10026057; scaffold1174 GLEAN promoter 627859 628858 0.999922 + . ID=CGI_10026059; scaffold1174 TRF Tandem_Repeat 628001 628716 763 + . . scaffold1174 GLEAN mRNA 628859 634677 0.999922 + . ID=CGI_10026059; scaffold1174 GLEAN mRNA 638532 675326 0.841346 - . ID=CGI_10026060; scaffold1174 TRF Tandem_Repeat 651068 651102 70 + . . scaffold1174 GLEAN promoter 675327 676326 0.841346 - . ID=CGI_10026060; scaffold1174 TRF Tandem_Repeat 679483 679522 80 + . . scaffold1174 TRF Tandem_Repeat 702265 702301 60 + . . scaffold1174 GLEAN promoter 707645 708644 1 + . ID=CGI_10026061; scaffold1174 GLEAN mRNA 708645 708857 1 + . ID=CGI_10026061; scaffold1174 TRF Tandem_Repeat 712218 712252 70 + . . scaffold1174 TRF Tandem_Repeat 718204 718238 70 + . . scaffold1174 GLEAN mRNA 721049 724024 0.967711 - . ID=CGI_10026062; scaffold1174 GLEAN promoter 724025 725024 0.967711 - . ID=CGI_10026062; scaffold1174 GLEAN mRNA 726733 751514 0.969124 - . ID=CGI_10026063; scaffold1174 TRF Tandem_Repeat 729955 730001 94 + . . scaffold1174 TRF Tandem_Repeat 738505 738533 58 + . . scaffold1174 TRF Tandem_Repeat 741007 741038 64 + . . scaffold1174 TRF Tandem_Repeat 742685 742744 113 + . . scaffold1174 GLEAN promoter 751515 752514 0.969124 - . ID=CGI_10026063; scaffold1174 GLEAN promoter 751762 752761 0.999908 + . ID=CGI_10026064; scaffold1174 GLEAN mRNA 752762 763384 0.999908 + . ID=CGI_10026064; scaffold1174 TRF Tandem_Repeat 770042 770100 118 + . . scaffold1174 GLEAN promoter 773706 774705 0.990067 + . ID=CGI_10026065; scaffold1174 TRF Tandem_Repeat 773730 773818 178 + . . scaffold1174 GLEAN mRNA 774706 780990 0.990067 + . ID=CGI_10026065; scaffold1174 GLEAN mRNA 782915 783952 0.999699 - . ID=CGI_10026066; scaffold1174 GLEAN promoter 783953 784952 0.999699 - . ID=CGI_10026066; scaffold1174 TRF Tandem_Repeat 785239 785273 70 + . . scaffold1174 TRF Tandem_Repeat 785786 785978 230 + . . scaffold1174 GLEAN mRNA 787198 788718 0.836024 - . ID=CGI_10026067; scaffold1174 GLEAN promoter 788719 789718 0.836024 - . ID=CGI_10026067; scaffold1174 TRF Tandem_Repeat 797836 797882 94 + . . scaffold1174 GLEAN promoter 800588 801587 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 801218 801298 162 + . . scaffold1174 GLEAN mRNA 801588 844706 0.999538 + . ID=CGI_10026068; scaffold1174 TRF Tandem_Repeat 812998 813044 94 + . . scaffold1174 TRF Tandem_Repeat 820703 820785 166 + . . scaffold1174 TRF Tandem_Repeat 822430 822470 55 + . . scaffold1174 TRF Tandem_Repeat 825332 825703 645 + . . scaffold1174 TRF Tandem_Repeat 829836 829916 144 + . . scaffold1174 TRF Tandem_Repeat 834285 834328 56 + . . scaffold1174 TRF Tandem_Repeat 834296 834325 53 + . . scaffold1174 TRF Tandem_Repeat 843709 843812 50 + . . scaffold1174 TRF Tandem_Repeat 848328 848359 55 + . . scaffold1174 TRF Tandem_Repeat 850125 850198 66 + . . scaffold1174 GLEAN mRNA 856705 862048 0.990216 - . ID=CGI_10026069; scaffold1174 GLEAN promoter 862049 863048 0.990216 - . ID=CGI_10026069; scaffold1174 TRF Tandem_Repeat 862201 862232 55 + . . scaffold1174 GLEAN mRNA 862807 886509 0.478729 - . ID=CGI_10026070; scaffold1174 TRF Tandem_Repeat 866190 866217 56 + . . scaffold1174 GLEAN promoter 881247 882246 0.999984 + . ID=CGI_10026071; scaffold1174 GLEAN mRNA 882247 883897 0.999984 + . ID=CGI_10026071; scaffold1174 GLEAN promoter 886510 887509 0.478729 - . ID=CGI_10026070; scaffold1174 WUBlastX LINE_L2 888565 888915 46 + . . scaffold1174 WUBlastX LINE_CR1-L2 888715 888918 78 + . . scaffold1174 TRF Tandem_Repeat 895243 895278 72 + . . scaffold1174 TRF Tandem_Repeat 897807 897851 56 + . . scaffold1174 TRF Tandem_Repeat 897808 897849 57 + . . scaffold1174 TRF Tandem_Repeat 898171 898602 695 + . . scaffold1174 TRF Tandem_Repeat 903499 903564 132 + . . scaffold1174 TRF Tandem_Repeat 906525 906569 90 + . . scaffold1174 TRF Tandem_Repeat 910471 910520 93 + . . scaffold1174 TRF Tandem_Repeat 912844 912891 55 + . . scaffold1174 TRF Tandem_Repeat 912853 912894 59 + . . scaffold1174 GLEAN promoter 916037 917036 0.964473 + . ID=CGI_10026072; scaffold1174 TRF Tandem_Repeat 916373 916417 90 + . . scaffold1174 GLEAN mRNA 917037 939462 0.964473 + . ID=CGI_10026072; scaffold1174 TRF Tandem_Repeat 928574 928895 635 + . . scaffold1174 WUBlastX DNA_IS4EU 928914 929780 180 - . . scaffold1174 WUBlastX DNA_Kolobok-IS4 928950 929675 235 - . . scaffold1174 WUBlastX DNA_IS4EU 929658 930080 44 - . . scaffold1174 WUBlastX DNA_IS4EU 930297 930782 203 - . . scaffold1174 WUBlastX DNA_Kolobok-Hyd 930336 931175 185 - . . scaffold1174 TRF Tandem_Repeat 932373 932460 126 + . . scaffold1174 TRF Tandem_Repeat 945691 945728 76 + . . scaffold1174 TRF Tandem_Repeat 945808 945832 50 + . . scaffold1174 GLEAN mRNA 947488 950490 0.999351 - . ID=CGI_10026074; scaffold1174 GLEAN promoter 950491 951490 0.999351 - . ID=CGI_10026074; scaffold1174 TRF Tandem_Repeat 953048 953077 51 + . . scaffold1174 WUBlastX LINE_RTE-X 953397 953675 62 - . . scaffold1174 WUBlastX LINE_RTE-X 953484 953651 64 - . . scaffold1174 WUBlastX LINE_RTE-X 953511 953720 87 - . . scaffold1174 GLEAN mRNA 956405 957870 0.734329 - . ID=CGI_10026075; scaffold1174 GLEAN promoter 957871 958870 0.734329 - . ID=CGI_10026075; scaffold1174 TRF Tandem_Repeat 965638 965673 72 + . . scaffold1174 TRF Tandem_Repeat 966347 966390 61 + . . scaffold1174 GLEAN promoter 968973 969972 0.301625 + . ID=CGI_10026076; scaffold1174 GLEAN mRNA 969973 990165 0.301625 + . ID=CGI_10026076; scaffold1174 WUBlastX DNA_Harbinger 975554 975730 57 + . . scaffold1174 WUBlastX DNA_Harbinger 975569 975712 77 + . . scaffold1174 WUBlastX DNA_Harbinger 975896 975979 24 + . . scaffold1174 TRF Tandem_Repeat 976662 976711 100 + . . scaffold1174 WUBlastX DNA_Harbinger 976904 977128 51 - . . scaffold1174 WUBlastX DNA_Harbinger 976904 977173 43 - . . scaffold1174 WUBlastX DNA_Harbinger 978632 978892 203 - . . scaffold1174 WUBlastX DNA_Harbinger 979421 979681 145 - . . scaffold1174 WUBlastX DNA_Harbinger 979433 979645 163 - . . scaffold1174 GLEAN mRNA 991942 997220 0.541954 - . ID=CGI_10026077; scaffold1174 GLEAN promoter 997221 998220 0.541954 - . ID=CGI_10026077; scaffold1174 GLEAN mRNA 998518 1007916 0.422732 - . ID=CGI_10026078; scaffold1174 TRF Tandem_Repeat 1005658 1005714 114 + . . scaffold1174 GLEAN promoter 1007917 1008916 0.422732 - . ID=CGI_10026078; scaffold1174 TRF Tandem_Repeat 1016270 1016331 108 + . . scaffold1174 GLEAN mRNA 1035203 1037648 1 - . ID=CGI_10026079; scaffold1174 GLEAN promoter 1037649 1038648 1 - . ID=CGI_10026079; scaffold1174 WUBlastX LINE_RTE-BovB 1047026 1047253 102 + . . scaffold1174 WUBlastX LINE_RTE-BovB 1047196 1047726 148 + . . scaffold1174 WUBlastX LINE_RTE-BovB 1047250 1047570 236 + . . scaffold1174 WUBlastX LINE_RTE-BovB 1047256 1047666 179 + . . scaffold1174 WUBlastX LINE_RTE-BovB 1048270 1048365 21 + . . scaffold1174 WUBlastX DNA_TcMar-Pogo 1057125 1058063 457 - . . scaffold1174 WUBlastX DNA_TcMar-Tigge 1057407 1058633 338 - . . scaffold1174 WUBlastX DNA_Kolobok 1059577 1059819 146 + . . scaffold1174 TRF Tandem_Repeat 1062083 1062273 121 + . . scaffold1174 TRF Tandem_Repeat 1062084 1062271 155 + . . scaffold1174 TRF Tandem_Repeat 1063282 1064139 1127 + . . scaffold1174 WUBlastX DNA_Kolobok 1069280 1069459 48 - . . scaffold1174 WUBlastX DNA_Kolobok 1069295 1069489 36 - . . scaffold1174 GLEAN promoter 1071564 1072563 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_MuDR 1071734 1072042 32 + . . scaffold1174 WUBlastX DNA_MuDR 1071827 1072033 52 + . . scaffold1174 WUBlastX DNA_MuDR 1071869 1072093 86 + . . scaffold1174 WUBlastX DNA_MuDR 1072363 1072608 32 + . . scaffold1174 GLEAN mRNA 1072564 1077795 0.506907 + . ID=CGI_10026080; scaffold1174 WUBlastX DNA_hAT-Blackja 1074693 1074815 55 - . . scaffold1174 WUBlastX DNA_hAT-Blackja 1075123 1075275 22 - . . scaffold1174 WUBlastX DNA_hAT-Blackja 1075726 1075941 93 - . . scaffold1174 WUBlastX DNA_hAT-Blackja 1076124 1076351 86 - . . scaffold1174 WUBlastX DNA_hAT-Blackja 1076466 1076669 28 - . . scaffold1174 WUBlastX DNA_En-Spm 1078295 1078675 131 + . . scaffold1174 WUBlastX DNA_En-Spm 1078334 1079101 55 + . . scaffold1174 WUBlastX DNA_En-Spm 1078824 1079402 46 + . . scaffold1174 GLEAN promoter 1079209 1080208 0.548358 + . ID=CGI_10026081; scaffold1174 GLEAN mRNA 1080209 1093364 0.548358 + . ID=CGI_10026081; scaffold1174 WUBlastX DNA_Kolobok-Hyd 1082467 1082823 66 + . . scaffold1174 WUBlastX DNA_TcMar-Fot1 1088994 1089671 322 + . . scaffold1174 WUBlastX DNA_TcMar-Fot1 1089685 1090149 154 + . . scaffold1174 WUBlastX DNA_TcMar-Fot1 1089703 1090089 217 + . . scaffold1174 WUBlastX DNA_TcMar-Fot1 1089703 1090707 42 + . . scaffold1174 WUBlastX LTR_Pao 1091543 1091689 68 + . . scaffold1174 GLEAN promoter 1102687 1103686 0.999991 + . ID=CGI_10026082; scaffold1174 GLEAN mRNA 1103687 1106889 0.999991 + . ID=CGI_10026082; scaffold1174 TRF Tandem_Repeat 1107328 1107993 965 + . . scaffold1174 GLEAN promoter 1114524 1115523 0.999368 + . ID=CGI_10026083; scaffold1174 GLEAN mRNA 1115524 1115905 0.999368 + . ID=CGI_10026083; scaffold1174 GLEAN promoter 1115556 1116555 0.999646 + . ID=CGI_10026084; scaffold1174 GLEAN mRNA 1116556 1117700 0.999646 + . ID=CGI_10026084; scaffold1177 TRF Tandem_Repeat 8780 8827 96 + . . scaffold1177 TRF Tandem_Repeat 11740 11793 108 + . . scaffold1177 GLEAN promoter 18467 19466 0.861136 + . ID=CGI_10003911; scaffold1177 GLEAN mRNA 19467 28317 0.861136 + . ID=CGI_10003911; scaffold1177 TRF Tandem_Repeat 32825 32890 78 + . . scaffold1177 WUBlastX LTR_Gypsy 36749 37099 71 + . . scaffold1177 WUBlastX LTR_Gypsy-Cigr 36842 37255 65 + . . scaffold1177 WUBlastX LTR_Gypsy 36851 37171 66 + . . scaffold1177 GLEAN promoter 58457 59456 1 + . ID=CGI_10003912; scaffold1177 GLEAN mRNA 59457 67111 1 + . ID=CGI_10003912; scaffold1177 GLEAN mRNA 67481 70856 0.889891 - . ID=CGI_10003913; scaffold1177 GLEAN promoter 70857 71856 0.889891 - . ID=CGI_10003913; scaffold1177 TRF Tandem_Repeat 73629 73670 50 + . . scaffold1177 GLEAN promoter 73651 74650 0.937811 + . ID=CGI_10003914; scaffold1177 GLEAN mRNA 74651 83816 0.937811 + . ID=CGI_10003914; scaffold1177 TRF Tandem_Repeat 79526 80289 1438 + . . scaffold1177 TRF Tandem_Repeat 81549 81883 598 + . . scaffold1177 TRF Tandem_Repeat 84079 84341 499 + . . scaffold1177 TRF Tandem_Repeat 85851 85904 64 + . . scaffold1179 TRF Tandem_Repeat 13247 14372 1634 + . . scaffold1179 TRF Tandem_Repeat 14403 14454 77 + . . scaffold1179 GLEAN promoter 14624 15623 0.541662 + . ID=CGI_10027339; scaffold1179 GLEAN mRNA 15624 31876 0.541662 + . ID=CGI_10027339; scaffold1179 WUBlastX DNA_Harbinger 17090 17311 68 + . . scaffold1179 TRF Tandem_Repeat 17715 17768 81 + . . scaffold1179 WUBlastX DNA_Harbinger 17862 18113 43 + . . scaffold1179 WUBlastX DNA_Harbinger 17889 18092 66 + . . scaffold1179 WUBlastX DNA_Harbinger 18212 18355 69 + . . scaffold1179 WUBlastX DNA_Harbinger 18300 18506 129 + . . scaffold1179 WUBlastX DNA_Harbinger 18342 18506 151 + . . scaffold1179 WUBlastX DNA_Harbinger 18609 18722 60 + . . scaffold1179 TRF Tandem_Repeat 20852 20908 62 + . . scaffold1179 WUBlastX LTR_Gypsy 21997 22620 162 + . . scaffold1179 WUBlastX LTR_Gypsy 22093 22626 199 + . . scaffold1179 WUBlastX LTR_Gypsy 22183 22875 202 + . . scaffold1179 WUBlastX LTR_Gypsy 22192 22623 334 + . . scaffold1179 WUBlastX LTR_Gypsy-Cigr 22195 22767 318 + . . scaffold1179 WUBlastX LTR_Gypsy 22773 22970 111 + . . scaffold1179 WUBlastX LTR_Gypsy 22967 23140 58 + . . scaffold1179 WUBlastX LTR_Gypsy 22967 23077 64 + . . scaffold1179 WUBlastX LTR_Gypsy 23243 23401 64 + . . scaffold1179 WUBlastX LTR_Gypsy-Cigr 23243 23497 57 + . . scaffold1179 WUBlastX LTR_Gypsy 23499 23657 29 + . . scaffold1179 WUBlastX LTR_Gypsy 23541 23708 79 + . . scaffold1179 WUBlastX LTR_Gypsy 23544 23819 54 + . . scaffold1179 WUBlastX LTR_Gypsy 23550 23741 69 + . . scaffold1179 WUBlastX LTR_Gypsy 24077 24265 20 + . . scaffold1179 TRF Tandem_Repeat 24536 24580 90 + . . scaffold1179 TRF Tandem_Repeat 25524 25555 55 + . . scaffold1179 TRF Tandem_Repeat 26465 26514 73 + . . scaffold1179 GLEAN promoter 38144 39143 0.726285 + . ID=CGI_10027340; scaffold1179 GLEAN mRNA 39144 50414 0.726285 + . ID=CGI_10027340; scaffold1179 TRF Tandem_Repeat 40623 40654 64 + . . scaffold1179 WUBlastX LINE_CR1-L2 42459 44234 271 - . . scaffold1179 WUBlastX LINE_CR1-L2 42459 43616 326 - . . scaffold1179 WUBlastX LINE_CR1-L2 44236 44325 24 - . . scaffold1179 TRF Tandem_Repeat 50426 50553 62 + . . scaffold1179 TRF Tandem_Repeat 50426 50553 62 + . . scaffold1179 TRF Tandem_Repeat 63941 64081 176 + . . scaffold1179 TRF Tandem_Repeat 67097 67153 114 + . . scaffold1179 TRF Tandem_Repeat 68928 69140 380 + . . scaffold1179 TRF Tandem_Repeat 68928 69144 388 + . . scaffold1179 TRF Tandem_Repeat 72286 72325 80 + . . scaffold1179 TRF Tandem_Repeat 77754 77887 110 + . . scaffold1179 GLEAN promoter 78874 79873 1 + . ID=CGI_10027341; scaffold1179 TRF Tandem_Repeat 79154 79287 110 + . . scaffold1179 GLEAN mRNA 79874 93183 1 + . ID=CGI_10027341; scaffold1179 TRF Tandem_Repeat 83679 83819 102 + . . scaffold1179 WUBlastX LINE_RTE-X 84454 84960 103 + . . scaffold1179 TRF Tandem_Repeat 88635 88664 51 + . . scaffold1179 TRF Tandem_Repeat 90253 90554 249 + . . scaffold1179 TRF Tandem_Repeat 90253 90554 277 + . . scaffold1179 TRF Tandem_Repeat 94896 94936 73 + . . scaffold1179 TRF Tandem_Repeat 95363 95406 52 + . . scaffold1179 GLEAN promoter 95938 96937 0.791674 + . ID=CGI_10027342; scaffold1179 GLEAN mRNA 96938 103830 0.791674 + . ID=CGI_10027342; scaffold1179 GLEAN mRNA 104901 122062 0.998746 - . ID=CGI_10027343; scaffold1179 TRF Tandem_Repeat 113009 113034 52 + . . scaffold1179 GLEAN promoter 118671 119670 0.999925 + . ID=CGI_10027344; scaffold1179 GLEAN mRNA 119671 129429 0.999925 + . ID=CGI_10027344; scaffold1179 GLEAN promoter 122063 123062 0.998746 - . ID=CGI_10027343; scaffold1179 TRF Tandem_Repeat 122097 122126 51 + . . scaffold1179 TRF Tandem_Repeat 124165 124382 357 + . . scaffold1179 GLEAN mRNA 127711 127905 1 - . ID=CGI_10027345; scaffold1179 GLEAN promoter 127906 128905 1 - . ID=CGI_10027345; scaffold1179 TRF Tandem_Repeat 130053 130136 87 + . . scaffold1179 WUBlastX LINE_Penelope 132214 132348 61 - . . scaffold1179 TRF Tandem_Repeat 132560 132653 116 + . . scaffold1179 TRF Tandem_Repeat 132702 132800 173 + . . scaffold1179 TRF Tandem_Repeat 138025 138759 658 + . . scaffold1179 TRF Tandem_Repeat 138929 138959 53 + . . scaffold1179 TRF Tandem_Repeat 140111 141008 1481 + . . scaffold1179 TRF Tandem_Repeat 142379 142591 187 + . . scaffold1179 WUBlastX LINE_L2 143210 143629 117 - . . scaffold1179 GLEAN promoter 147905 148904 0.998432 + . ID=CGI_10027346; scaffold1179 GLEAN mRNA 148905 177665 0.998432 + . ID=CGI_10027346; scaffold1179 GLEAN mRNA 178919 200008 1 - . ID=CGI_10027347; scaffold1179 TRF Tandem_Repeat 184793 184860 84 + . . scaffold1179 TRF Tandem_Repeat 187912 188515 338 + . . scaffold1179 TRF Tandem_Repeat 188619 188660 66 + . . scaffold1179 TRF Tandem_Repeat 191061 191739 1160 + . . scaffold1179 TRF Tandem_Repeat 198942 199377 509 + . . scaffold1179 TRF Tandem_Repeat 199011 199363 373 + . . scaffold1179 GLEAN promoter 200009 201008 1 - . ID=CGI_10027347; scaffold1179 GLEAN promoter 214793 215792 0.999388 + . ID=CGI_10027348; scaffold1179 GLEAN mRNA 215793 229706 0.999388 + . ID=CGI_10027348; scaffold1179 TRF Tandem_Repeat 216651 216687 65 + . . scaffold1179 TRF Tandem_Repeat 226785 227054 495 + . . scaffold1179 TRF Tandem_Repeat 230334 230632 429 + . . scaffold1179 TRF Tandem_Repeat 232131 232430 422 + . . scaffold1179 GLEAN promoter 232377 233376 0.920529 + . ID=CGI_10027349; scaffold1179 GLEAN mRNA 233377 235759 0.920529 + . ID=CGI_10027349; scaffold1179 TRF Tandem_Repeat 241149 241469 387 + . . scaffold1179 GLEAN mRNA 242117 255800 0.999676 - . ID=CGI_10027350; scaffold1179 TRF Tandem_Repeat 247961 248223 228 + . . scaffold1179 GLEAN promoter 255801 256800 0.999676 - . ID=CGI_10027350; scaffold1179 TRF Tandem_Repeat 263451 264948 1509 + . . scaffold1179 TRF Tandem_Repeat 263451 264946 1639 + . . scaffold1179 TRF Tandem_Repeat 266525 266927 527 + . . scaffold1179 GLEAN promoter 286282 287281 1 + . ID=CGI_10027351; scaffold1179 GLEAN mRNA 287282 290175 1 + . ID=CGI_10027351; scaffold1179 GLEAN mRNA 292571 295001 1 - . ID=CGI_10027352; scaffold1179 GLEAN promoter 295002 296001 1 - . ID=CGI_10027352; scaffold1179 TRF Tandem_Repeat 299015 299072 116 + . . scaffold1179 TRF Tandem_Repeat 301501 301534 59 + . . scaffold1179 GLEAN promoter 306105 307104 0.985265 + . ID=CGI_10027353; scaffold1179 GLEAN mRNA 307105 310059 0.985265 + . ID=CGI_10027353; scaffold1179 TRF Tandem_Repeat 307466 307504 78 + . . scaffold1179 GLEAN promoter 309484 310483 0.99836 + . ID=CGI_10027354; scaffold1179 GLEAN mRNA 310484 310753 0.99836 + . ID=CGI_10027354; scaffold1179 TRF Tandem_Repeat 310889 310958 140 + . . scaffold1179 GLEAN promoter 313785 314784 0.993907 + . ID=CGI_10027355; scaffold1179 GLEAN mRNA 314785 321759 0.993907 + . ID=CGI_10027355; scaffold1179 TRF Tandem_Repeat 325492 325545 108 + . . scaffold1179 TRF Tandem_Repeat 330209 331078 1300 + . . scaffold1179 GLEAN promoter 333129 334128 0.999624 + . ID=CGI_10027356; scaffold1179 GLEAN mRNA 334129 344435 0.999624 + . ID=CGI_10027356; scaffold1179 TRF Tandem_Repeat 340581 340812 118 + . . scaffold1179 GLEAN mRNA 346724 346999 0.618241 - . ID=CGI_10027357; scaffold1179 GLEAN promoter 347000 347999 0.618241 - . ID=CGI_10027357; scaffold1179 WUBlastX LTR_Ngaro 352953 353891 397 - . . scaffold1179 WUBlastX LTR_Ngaro 353834 355483 1134 - . . scaffold1179 WUBlastX LTR_Ngaro 355515 356111 137 - . . scaffold1179 WUBlastX LTR_Ngaro 355686 356174 247 - . . scaffold1179 WUBlastX LTR_Ngaro 355710 356327 195 - . . scaffold1179 GLEAN promoter 361152 362151 0.999538 + . ID=CGI_10027358; scaffold1179 GLEAN mRNA 362152 376470 0.999538 + . ID=CGI_10027358; scaffold1179 TRF Tandem_Repeat 362504 362543 80 + . . scaffold1179 TRF Tandem_Repeat 362708 362748 82 + . . scaffold1179 TRF Tandem_Repeat 367085 367427 550 + . . scaffold1179 TRF Tandem_Repeat 368203 369811 1281 + . . scaffold1179 TRF Tandem_Repeat 368203 369811 1156 + . . scaffold1179 GLEAN mRNA 373943 378496 0.998947 - . ID=CGI_10027359; scaffold1179 TRF Tandem_Repeat 375503 375670 264 + . . scaffold1179 GLEAN promoter 378497 379496 0.998947 - . ID=CGI_10027359; scaffold1179 GLEAN mRNA 378600 382581 1 - . ID=CGI_10027360; scaffold1179 GLEAN promoter 382582 383581 1 - . ID=CGI_10027360; scaffold1179 TRF Tandem_Repeat 385201 385263 126 + . . scaffold1179 GLEAN promoter 387249 388248 1 + . ID=CGI_10027361; scaffold1179 GLEAN mRNA 388249 389013 1 + . ID=CGI_10027361; scaffold1179 GLEAN mRNA 390143 391376 1 - . ID=CGI_10027362; scaffold1179 GLEAN promoter 391377 392376 1 - . ID=CGI_10027362; scaffold1179 TRF Tandem_Repeat 392057 392137 162 + . . scaffold1179 GLEAN mRNA 392161 395510 1 - . ID=CGI_10027363; scaffold1179 GLEAN promoter 395511 396510 1 - . ID=CGI_10027363; scaffold1179 TRF Tandem_Repeat 398002 398047 76 + . . scaffold1179 WUBlastX LINE_L1-Tx1 406125 407411 659 + . . scaffold1179 WUBlastX LINE_L1-Tx1 407534 409882 1136 + . . scaffold1179 WUBlastX LINE_L1-Tx1 412313 412999 63 - . . scaffold1179 WUBlastX LINE_L1-Tx1 412646 412978 67 - . . scaffold1179 WUBlastX LINE_L1 412712 412942 80 - . . scaffold1179 WUBlastX LINE_L1-Tx1 412715 413023 68 - . . scaffold1179 WUBlastX LINE_L1-Tx1 412951 413088 37 - . . scaffold1179 GLEAN mRNA 413465 416818 0.677502 - . ID=CGI_10027364; scaffold1179 GLEAN promoter 416819 417818 0.677502 - . ID=CGI_10027364; scaffold1179 WUBlastX LINE_RTE-X 419243 420682 686 + . . scaffold1179 WUBlastX LINE_RTE-X 421367 421591 61 - . . scaffold1179 WUBlastX LINE_RTE-X 421421 421627 66 - . . scaffold1179 WUBlastX LINE_RTE-X 421460 421633 96 - . . scaffold1179 WUBlastX LINE_RTE-X 421460 421693 63 - . . scaffold1179 WUBlastX LINE_L1 421816 421923 21 - . . scaffold1179 WUBlastX LINE_RTE-X 422239 423336 431 - . . scaffold1179 WUBlastX LINE_RTE-X 423338 423889 209 - . . scaffold1179 WUBlastX LINE_RTE-X 423353 423772 227 - . . scaffold1179 WUBlastX LINE_RTE-X 423359 424009 195 - . . scaffold1179 WUBlastX LINE_L2 423386 424177 69 - . . scaffold1179 WUBlastX LINE_RTE-X 424393 424602 30 - . . scaffold1179 WUBlastX LINE_RTE-X 424432 424596 43 - . . scaffold1179 WUBlastX LTR_DIRS 427922 428590 277 - . . scaffold1179 WUBlastX LTR_DIRS 428595 428720 47 - . . scaffold1179 TRF Tandem_Repeat 432375 432434 120 + . . scaffold1179 GLEAN mRNA 437414 446157 0.999948 - . ID=CGI_10027365; scaffold1179 TRF Tandem_Repeat 439370 439414 83 + . . scaffold1179 TRF Tandem_Repeat 439719 439775 114 + . . scaffold1179 WUBlastX DNA_Harbinger 443994 444206 91 + . . scaffold1179 GLEAN promoter 446158 447157 0.999948 - . ID=CGI_10027365; scaffold1179 GLEAN mRNA 448391 449105 1 - . ID=CGI_10027366; scaffold1179 GLEAN promoter 449106 450105 1 - . ID=CGI_10027366; scaffold1179 WUBlastX DNA_Sola 450050 450712 133 + . . scaffold1179 GLEAN mRNA 452211 457477 1 - . ID=CGI_10027367; scaffold1179 TRF Tandem_Repeat 454708 454757 52 + . . scaffold1179 GLEAN promoter 457478 458477 1 - . ID=CGI_10027367; scaffold1179 TRF Tandem_Repeat 459116 459151 72 + . . scaffold1179 TRF Tandem_Repeat 462590 463041 437 + . . scaffold1179 GLEAN mRNA 463223 465010 0.999999 - . ID=CGI_10027368; scaffold1179 GLEAN promoter 464428 465427 0.999676 + . ID=CGI_10027369; scaffold1179 GLEAN promoter 465011 466010 0.999999 - . ID=CGI_10027368; scaffold1179 TRF Tandem_Repeat 465182 465226 72 + . . scaffold1179 GLEAN mRNA 465428 470077 0.999676 + . ID=CGI_10027369; scaffold1179 GLEAN mRNA 470833 479133 0.993906 - . ID=CGI_10027370; scaffold1179 GLEAN promoter 471712 472711 0.557139 + . ID=CGI_10027371; scaffold1179 GLEAN mRNA 472712 475755 0.557139 + . ID=CGI_10027371; scaffold1179 GLEAN promoter 479134 480133 0.993906 - . ID=CGI_10027370; scaffold1179 GLEAN mRNA 480376 480813 0.593391 - . ID=CGI_10027372; scaffold1179 WUBlastX LINE_RTE-X 480682 480819 24 + . . scaffold1179 GLEAN promoter 480814 481813 0.593391 - . ID=CGI_10027372; scaffold1179 WUBlastX LINE_RTE-X 481237 481758 125 + . . scaffold1179 GLEAN promoter 483545 484544 0.993584 + . ID=CGI_10027373; scaffold1179 GLEAN mRNA 484545 495017 0.993584 + . ID=CGI_10027373; scaffold1179 TRF Tandem_Repeat 485605 485669 112 + . . scaffold1179 TRF Tandem_Repeat 492175 492655 593 + . . scaffold1179 WUBlastX LINE_RTE-BovB 496118 496348 51 + . . scaffold1179 WUBlastX LINE_RTE-BovB 496154 496393 103 + . . scaffold1179 TRF Tandem_Repeat 496897 496938 84 + . . scaffold1179 TRF Tandem_Repeat 497236 497290 110 + . . scaffold1179 TRF Tandem_Repeat 498090 498842 1235 + . . scaffold1179 TRF Tandem_Repeat 499167 499862 620 + . . scaffold1179 TRF Tandem_Repeat 499167 499861 553 + . . scaffold1179 TRF Tandem_Repeat 499167 499862 980 + . . scaffold1179 TRF Tandem_Repeat 505634 505678 90 + . . scaffold1179 GLEAN mRNA 508904 510163 0.247596 - . ID=CGI_10027374; scaffold1179 GLEAN promoter 510164 511163 0.247596 - . ID=CGI_10027374; scaffold1179 GLEAN promoter 512646 513645 0.983468 + . ID=CGI_10027375; scaffold1179 GLEAN mRNA 513646 526577 0.983468 + . ID=CGI_10027375; scaffold1179 TRF Tandem_Repeat 515290 515358 138 + . . scaffold1179 GLEAN mRNA 528139 529542 1 - . ID=CGI_10027376; scaffold1179 GLEAN promoter 529543 530542 1 - . ID=CGI_10027376; scaffold1179 GLEAN mRNA 533880 537655 0.958254 - . ID=CGI_10027377; scaffold1179 GLEAN promoter 537656 538655 0.958254 - . ID=CGI_10027377; scaffold1179 GLEAN mRNA 538020 538879 0.999481 - . ID=CGI_10027378; scaffold1179 GLEAN promoter 538880 539879 0.999481 - . ID=CGI_10027378; scaffold1179 TRF Tandem_Repeat 545823 546179 310 + . . scaffold1179 TRF Tandem_Repeat 564311 564667 310 + . . scaffold1179 TRF Tandem_Repeat 576059 576228 195 + . . scaffold1179 TRF Tandem_Repeat 578618 578936 214 + . . scaffold1179 TRF Tandem_Repeat 580774 581266 422 + . . scaffold1179 TRF Tandem_Repeat 580774 581266 476 + . . scaffold1179 GLEAN mRNA 582056 599177 0.399321 - . ID=CGI_10027379; scaffold1179 TRF Tandem_Repeat 587943 587976 68 + . . scaffold1179 TRF Tandem_Repeat 595796 595948 227 + . . scaffold1179 TRF Tandem_Repeat 596318 596390 146 + . . scaffold1179 GLEAN promoter 597426 598425 1 + . ID=CGI_10027380; scaffold1179 GLEAN mRNA 598426 599303 1 + . ID=CGI_10027380; scaffold1179 GLEAN promoter 599178 600177 0.399321 - . ID=CGI_10027379; scaffold1179 TRF Tandem_Repeat 606422 606465 61 + . . scaffold1179 TRF Tandem_Repeat 608433 608470 60 + . . scaffold1179 GLEAN mRNA 615223 616206 0.994697 - . ID=CGI_10027381; scaffold1179 GLEAN promoter 616207 617206 0.994697 - . ID=CGI_10027381; scaffold1179 TRF Tandem_Repeat 620155 620185 62 + . . scaffold1179 GLEAN mRNA 620560 620817 0.999372 - . ID=CGI_10027382; scaffold1179 GLEAN promoter 620818 621817 0.999372 - . ID=CGI_10027382; scaffold1179 GLEAN mRNA 625437 635814 1 - . ID=CGI_10027383; scaffold1179 GLEAN promoter 635158 636157 0.99998 + . ID=CGI_10027384; scaffold1179 GLEAN promoter 635815 636814 1 - . ID=CGI_10027383; scaffold1179 GLEAN mRNA 636158 644098 0.99998 + . ID=CGI_10027384; scaffold1179 TRF Tandem_Repeat 645162 645235 148 + . . scaffold1179 TRF Tandem_Repeat 645780 645814 70 + . . scaffold1179 TRF Tandem_Repeat 668198 668248 50 + . . scaffold1179 TRF Tandem_Repeat 677793 677832 80 + . . scaffold1179 GLEAN mRNA 687667 693551 0.999234 - . ID=CGI_10027385; scaffold1179 GLEAN promoter 693552 694551 0.999234 - . ID=CGI_10027385; scaffold1179 TRF Tandem_Repeat 694737 694791 110 + . . scaffold1179 TRF Tandem_Repeat 695080 695115 72 + . . scaffold1179 TRF Tandem_Repeat 697509 697602 65 + . . scaffold1179 TRF Tandem_Repeat 697515 697602 97 + . . scaffold1179 TRF Tandem_Repeat 699206 699259 108 + . . scaffold1179 GLEAN mRNA 701545 702063 0.996819 - . ID=CGI_10027386; scaffold1179 GLEAN promoter 702064 703063 0.996819 - . ID=CGI_10027386; scaffold1179 TRF Tandem_Repeat 708003 709373 939 + . . scaffold1179 GLEAN mRNA 757616 757819 0.733495 - . ID=CGI_10027387; scaffold1179 GLEAN promoter 757820 758819 0.733495 - . ID=CGI_10027387; scaffold1179 TRF Tandem_Repeat 761774 761804 62 + . . scaffold1179 TRF Tandem_Repeat 766285 766335 102 + . . scaffold1179 TRF Tandem_Repeat 767113 767157 90 + . . scaffold1179 TRF Tandem_Repeat 812506 812555 100 + . . scaffold1179 GLEAN promoter 823658 824657 0.999916 + . ID=CGI_10027388; scaffold1179 GLEAN mRNA 824658 830848 0.999916 + . ID=CGI_10027388; scaffold1179 WUBlastX LINE_L2 833580 833819 57 + . . scaffold1179 TRF Tandem_Repeat 849252 849292 64 + . . scaffold1179 TRF Tandem_Repeat 853909 853950 84 + . . scaffold1179 WUBlastX LINE_L1-Tx1 854290 854463 54 - . . scaffold1179 GLEAN promoter 855855 856854 0.430656 + . ID=CGI_10027390; scaffold1179 GLEAN mRNA 856855 867014 0.430656 + . ID=CGI_10027390; scaffold1179 TRF Tandem_Repeat 859915 859959 90 + . . scaffold1179 WUBlastX LTR_Gypsy 872197 872286 20 - . . scaffold1179 WUBlastX DNA_P 872341 872580 65 + . . scaffold1179 WUBlastX LTR_Gypsy-Cigr 872441 873130 266 - . . scaffold1179 WUBlastX LTR_Gypsy 872555 873133 395 - . . scaffold1179 WUBlastX LTR_Gypsy 873037 874620 613 - . . scaffold1179 WUBlastX LTR_Gypsy 874855 875076 36 - . . scaffold1179 WUBlastX LTR_Gypsy 874855 875175 23 - . . scaffold1179 WUBlastX DNA_Academ 877639 877698 27 - . . scaffold1179 TRF Tandem_Repeat 889381 890153 953 + . . scaffold1179 GLEAN promoter 898006 899005 0.999999 + . ID=CGI_10027391; scaffold1179 GLEAN mRNA 899006 902025 0.999999 + . ID=CGI_10027391; scaffold1179 TRF Tandem_Repeat 905810 905943 87 + . . scaffold1179 GLEAN mRNA 910112 912193 0.727725 - . ID=CGI_10027392; scaffold1179 WUBlastX LTR_Copia 910301 910573 51 - . . scaffold1179 WUBlastX LTR_Gypsy 910463 911074 73 - . . scaffold1179 GLEAN promoter 912194 913193 0.727725 - . ID=CGI_10027392; scaffold1179 WUBlastX LTR_DIRS 918217 918426 26 + . . scaffold1179 WUBlastX LTR_DIRS 918456 918689 77 + . . scaffold1179 TRF Tandem_Repeat 919451 919712 416 + . . scaffold1179 WUBlastX LTR_DIRS 922387 922530 50 + . . scaffold1179 GLEAN promoter 935280 936279 0.224969 + . ID=CGI_10027393; scaffold1179 GLEAN mRNA 936280 947260 0.224969 + . ID=CGI_10027393; scaffold1179 WUBlastX LINE_L1-Tx1 939452 939559 89 - . . scaffold1179 WUBlastX LINE_L1 939540 939812 87 + . . scaffold1179 WUBlastX LINE_L1-Tx1 939636 939869 97 + . . scaffold1179 WUBlastX LINE_L1-Tx1 939636 939992 80 + . . scaffold1179 WUBlastX LINE_L1 939636 939812 122 + . . scaffold1179 WUBlastX LINE_L1-Tx1 939636 939917 81 + . . scaffold1179 WUBlastX LINE_L1 940877 941167 33 + . . scaffold1179 WUBlastX LINE_L1 940955 941209 25 + . . scaffold1179 WUBlastX LINE_L1-Tx1 940955 941167 77 + . . scaffold1179 TRF Tandem_Repeat 985047 985554 716 + . . scaffold1179 GLEAN mRNA 1003480 1016060 0.999716 - . ID=CGI_10027394; scaffold1179 TRF Tandem_Repeat 1009785 1009827 77 + . . scaffold1179 GLEAN promoter 1015886 1016885 0.583237 + . ID=CGI_10027395; scaffold1179 GLEAN promoter 1016061 1017060 0.999716 - . ID=CGI_10027394; scaffold1179 GLEAN mRNA 1016886 1024131 0.583237 + . ID=CGI_10027395; scaffold1179 TRF Tandem_Repeat 1035503 1035557 110 + . . scaffold1179 GLEAN promoter 1035523 1036522 0.654722 + . ID=CGI_10027396; scaffold1179 GLEAN mRNA 1036523 1042039 0.654722 + . ID=CGI_10027396; scaffold1179 TRF Tandem_Repeat 1036787 1036832 92 + . . scaffold1179 GLEAN mRNA 1042762 1044132 1 - . ID=CGI_10027397; scaffold1179 GLEAN promoter 1044133 1045132 1 - . ID=CGI_10027397; scaffold1179 GLEAN mRNA 1045055 1045926 1 - . ID=CGI_10027398; scaffold1179 GLEAN promoter 1045927 1046926 1 - . ID=CGI_10027398; scaffold1179 GLEAN promoter 1050391 1051390 0.804761 + . ID=CGI_10027399; scaffold1179 GLEAN mRNA 1051391 1061575 0.804761 + . ID=CGI_10027399; scaffold1179 GLEAN promoter 1062764 1063763 0.970354 + . ID=CGI_10027400; scaffold1179 GLEAN mRNA 1063764 1075733 0.970354 + . ID=CGI_10027400; scaffold1179 TRF Tandem_Repeat 1066773 1066829 107 + . . scaffold1179 WUBlastX LINE_RTE-BovB 1068130 1068336 85 - . . scaffold1179 TRF Tandem_Repeat 1077663 1078701 1361 + . . scaffold1179 GLEAN mRNA 1083400 1087726 0.765265 - . ID=CGI_10027401; scaffold1179 GLEAN promoter 1087727 1088726 0.765265 - . ID=CGI_10027401; scaffold1179 GLEAN promoter 1089098 1090097 1 + . ID=CGI_10027402; scaffold1179 GLEAN mRNA 1090098 1092926 1 + . ID=CGI_10027402; scaffold1179 GLEAN mRNA 1091990 1097841 0.81925 - . ID=CGI_10027403; scaffold1179 GLEAN promoter 1097842 1098841 0.81925 - . ID=CGI_10027403; scaffold1179 GLEAN mRNA 1099125 1106994 0.42188 - . ID=CGI_10027404; scaffold1179 GLEAN promoter 1106995 1107994 0.42188 - . ID=CGI_10027404; scaffold1179 GLEAN promoter 1108861 1109860 0.998466 + . ID=CGI_10027405; scaffold1179 GLEAN mRNA 1109861 1124935 0.998466 + . ID=CGI_10027405; scaffold1179 GLEAN mRNA 1128748 1129910 1 - . ID=CGI_10027406; scaffold1179 GLEAN promoter 1129911 1130910 1 - . ID=CGI_10027406; scaffold1179 GLEAN mRNA 1130185 1136014 1 - . ID=CGI_10027407; scaffold1179 GLEAN promoter 1136015 1137014 1 - . ID=CGI_10027407; scaffold1179 GLEAN mRNA 1142136 1148187 0.999999 - . ID=CGI_10027408; scaffold1179 GLEAN promoter 1148188 1149187 0.999999 - . ID=CGI_10027408; scaffold1179 TRF Tandem_Repeat 1149011 1149069 118 + . . scaffold1179 GLEAN mRNA 1150715 1154955 0.999675 - . ID=CGI_10027409; scaffold1179 GLEAN promoter 1154956 1155955 0.999675 - . ID=CGI_10027409; scaffold1179 GLEAN promoter 1155252 1156251 1 + . ID=CGI_10027410; scaffold1179 GLEAN mRNA 1156252 1161465 1 + . ID=CGI_10027410; scaffold1179 GLEAN mRNA 1166969 1190798 0.999671 - . ID=CGI_10027411; scaffold1179 GLEAN promoter 1177971 1178970 0.998781 + . ID=CGI_10027412; scaffold1179 GLEAN mRNA 1178971 1184238 0.998781 + . ID=CGI_10027412; scaffold1179 TRF Tandem_Repeat 1184311 1184361 102 + . . scaffold1179 GLEAN promoter 1190799 1191798 0.999671 - . ID=CGI_10027411; scaffold1179 GLEAN promoter 1192323 1193322 1 + . ID=CGI_10027413; scaffold1179 GLEAN mRNA 1193323 1202791 1 + . ID=CGI_10027413; scaffold1179 TRF Tandem_Repeat 1195981 1196073 186 + . . scaffold1179 TRF Tandem_Repeat 1201910 1202026 207 + . . scaffold1179 GLEAN mRNA 1205025 1206005 0.993482 - . ID=CGI_10027414; scaffold1179 GLEAN promoter 1206006 1207005 0.993482 - . ID=CGI_10027414; scaffold1179 TRF Tandem_Repeat 1210377 1210403 54 + . . scaffold1179 GLEAN mRNA 1211321 1215235 0.457085 - . ID=CGI_10027415; scaffold1179 WUBlastX LINE_L1 1212986 1213552 70 + . . scaffold1179 WUBlastX LINE_L1 1212986 1213156 71 + . . scaffold1179 WUBlastX LINE_L1-Tx1 1213256 1214002 87 + . . scaffold1179 WUBlastX LINE_L1 1213967 1214215 51 + . . scaffold1179 WUBlastX LINE_L1-Tx1 1214063 1214206 55 + . . scaffold1179 TRF Tandem_Repeat 1214496 1214542 94 + . . scaffold1179 GLEAN promoter 1215236 1216235 0.457085 - . ID=CGI_10027415; scaffold1179 TRF Tandem_Repeat 1229926 1231652 2176 + . . scaffold1179 TRF Tandem_Repeat 1229926 1231652 2261 + . . scaffold1179 TRF Tandem_Repeat 1231822 1231890 113 + . . scaffold1179 TRF Tandem_Repeat 1231822 1231884 99 + . . scaffold1179 GLEAN mRNA 1232531 1260961 0.415854 - . ID=CGI_10027416; scaffold1179 TRF Tandem_Repeat 1235685 1235747 99 + . . scaffold1179 TRF Tandem_Repeat 1235685 1235753 113 + . . scaffold1179 TRF Tandem_Repeat 1244928 1244970 50 + . . scaffold1179 TRF Tandem_Repeat 1255839 1255867 51 + . . scaffold1179 GLEAN promoter 1260962 1261961 0.415854 - . ID=CGI_10027416; scaffold1179 TRF Tandem_Repeat 1267053 1267105 70 + . . scaffold1179 TRF Tandem_Repeat 1267053 1267105 88 + . . scaffold1179 GLEAN mRNA 1272184 1279749 0.982693 - . ID=CGI_10027417; scaffold1179 GLEAN promoter 1279750 1280749 0.982693 - . ID=CGI_10027417; scaffold1179 GLEAN mRNA 1282972 1284489 1 - . ID=CGI_10027418; scaffold1179 GLEAN promoter 1284490 1285489 1 - . ID=CGI_10027418; scaffold1179 GLEAN promoter 1285843 1286842 0.887369 + . ID=CGI_10027419; scaffold1179 GLEAN mRNA 1286843 1305972 0.887369 + . ID=CGI_10027419; scaffold1179 TRF Tandem_Repeat 1288828 1288859 55 + . . scaffold1179 TRF Tandem_Repeat 1289031 1290153 1389 + . . scaffold1179 WUBlastX LTR_Gypsy 1295044 1295274 55 + . . scaffold1179 WUBlastX DNA_P 1295122 1295256 58 + . . scaffold1179 WUBlastX LTR_Gypsy 1298091 1299542 1173 - . . scaffold1179 WUBlastX LTR_Gypsy 1299484 1301928 1966 - . . scaffold1179 TRF Tandem_Repeat 1314979 1315022 88 + . . scaffold1179 TRF Tandem_Repeat 1323106 1323135 60 + . . scaffold1179 WUBlastX DNA_Crypton 1325309 1325935 99 - . . scaffold1179 WUBlastX DNA_Crypton 1329195 1330103 90 - . . scaffold1179 WUBlastX DNA_Crypton 1329273 1329788 154 - . . scaffold1179 GLEAN mRNA 1331773 1332764 0.992318 - . ID=CGI_10027421; scaffold1179 WUBlastX DNA_PiggyBac 1331836 1332051 36 - . . scaffold1179 GLEAN promoter 1332765 1333764 0.992318 - . ID=CGI_10027421; scaffold1179 GLEAN mRNA 1333065 1336155 0.976862 - . ID=CGI_10027422; scaffold1179 WUBlastX DNA_PiggyBac 1334386 1334601 65 - . . scaffold1179 WUBlastX DNA_PiggyBac 1335160 1335432 38 - . . scaffold1179 GLEAN promoter 1336156 1337155 0.976862 - . ID=CGI_10027422; scaffold1179 GLEAN mRNA 1337347 1343683 0.999954 - . ID=CGI_10027423; scaffold1179 WUBlastX DNA_PiggyBac 1337401 1337733 38 - . . scaffold1179 GLEAN promoter 1343684 1344683 0.999954 - . ID=CGI_10027423; scaffold1179 GLEAN promoter 1345929 1346928 1 + . ID=CGI_10027424; scaffold1179 GLEAN mRNA 1346929 1350484 1 + . ID=CGI_10027424; scaffold1179 TRF Tandem_Repeat 1348017 1348056 80 + . . scaffold1179 TRF Tandem_Repeat 1352741 1352794 108 + . . scaffold1179 WUBlastX LTR_DIRS 1355198 1356148 470 - . . scaffold1179 WUBlastX LTR_DIRS 1356488 1356880 234 - . . scaffold118 GLEAN mRNA 2094 16882 0.499311 - . ID=CGI_10004578; scaffold118 TRF Tandem_Repeat 2292 2369 156 + . . scaffold118 TRF Tandem_Repeat 8105 8583 586 + . . scaffold118 GLEAN promoter 16883 17882 0.499311 - . ID=CGI_10004578; scaffold118 WUBlastX DNA_IS4EU 18078 18983 37 - . . scaffold118 WUBlastX DNA_MuDR 18669 19061 108 - . . scaffold118 WUBlastX DNA_MuDR 19208 20164 295 - . . scaffold118 WUBlastX DNA_MuDR 20313 20675 56 - . . scaffold118 WUBlastX LINE_RTE-X 21691 22011 119 - . . scaffold118 WUBlastX LINE_RTE-X 21757 22053 195 - . . scaffold118 WUBlastX LINE_RTE-X 22061 22684 293 - . . scaffold118 WUBlastX LINE_RTE-X 22229 22789 27 - . . scaffold118 TRF Tandem_Repeat 24414 24643 451 + . . scaffold118 WUBlastX DNA_IS4EU 24674 24790 26 - . . scaffold118 WUBlastX DNA_IS4EU 24814 25386 191 - . . scaffold118 WUBlastX DNA_IS4EU 24814 25527 137 - . . scaffold118 WUBlastX DNA_IS4EU 25660 25767 22 - . . scaffold118 TRF Tandem_Repeat 28200 28287 117 + . . scaffold118 TRF Tandem_Repeat 29639 29673 70 + . . scaffold118 TRF Tandem_Repeat 32917 32953 74 + . . scaffold118 TRF Tandem_Repeat 33686 33749 121 + . . scaffold118 TRF Tandem_Repeat 34696 34735 80 + . . scaffold118 TRF Tandem_Repeat 37326 37546 198 + . . scaffold118 TRF Tandem_Repeat 37355 37568 80 + . . scaffold118 TRF Tandem_Repeat 37356 37566 102 + . . scaffold118 TRF Tandem_Repeat 37485 37578 72 + . . scaffold118 GLEAN promoter 37691 38690 0.999984 + . ID=CGI_10004580; scaffold118 TRF Tandem_Repeat 38294 38343 55 + . . scaffold118 GLEAN mRNA 38691 39074 0.999984 + . ID=CGI_10004580; scaffold118 GLEAN mRNA 39275 40575 0.593367 - . ID=CGI_10004581; scaffold118 GLEAN promoter 40576 41575 0.593367 - . ID=CGI_10004581; scaffold118 TRF Tandem_Repeat 43097 43598 301 + . . scaffold118 TRF Tandem_Repeat 49696 50768 950 + . . scaffold118 TRF Tandem_Repeat 49696 50768 720 + . . scaffold118 TRF Tandem_Repeat 49697 50354 529 + . . scaffold118 TRF Tandem_Repeat 50357 50755 435 + . . scaffold118 TRF Tandem_Repeat 59256 59563 306 + . . scaffold118 TRF Tandem_Repeat 59256 59563 270 + . . scaffold118 GLEAN mRNA 62670 64618 0.49839 - . ID=CGI_10004582; scaffold118 GLEAN promoter 63475 64474 0.835706 + . ID=CGI_10004583; scaffold118 TRF Tandem_Repeat 63591 63633 86 + . . scaffold118 GLEAN mRNA 64475 78115 0.835706 + . ID=CGI_10004583; scaffold118 GLEAN promoter 64619 65618 0.49839 - . ID=CGI_10004582; scaffold118 WUBlastX LINE_L2 72595 73329 148 + . . scaffold118 WUBlastX LINE_CR1-L2 72790 73296 225 + . . scaffold118 WUBlastX LINE_L2 74209 77424 1801 + . . scaffold118 TRF Tandem_Repeat 85875 86202 312 + . . scaffold118 TRF Tandem_Repeat 85881 86202 282 + . . scaffold1180 TRF Tandem_Repeat 7269 7462 235 + . . scaffold1180 TRF Tandem_Repeat 7269 7462 273 + . . scaffold1180 GLEAN promoter 12672 13671 0.485788 + . ID=CGI_10005979; scaffold1180 GLEAN mRNA 13672 45655 0.485788 + . ID=CGI_10005979; scaffold1180 TRF Tandem_Repeat 16762 17959 1607 + . . scaffold1180 WUBlastX LTR_DIRS 23575 23790 44 + . . scaffold1180 WUBlastX LTR_DIRS 23834 23986 22 + . . scaffold1180 WUBlastX LTR_DIRS 24209 24349 66 + . . scaffold1180 WUBlastX LTR_DIRS 24369 24659 93 + . . scaffold1180 WUBlastX LTR_DIRS 24610 24945 171 + . . scaffold1180 WUBlastX LTR_DIRS 25043 25417 90 + . . scaffold1180 WUBlastX LTR_DIRS 25727 25783 40 + . . scaffold1180 WUBlastX LTR_DIRS 25797 26234 101 + . . scaffold1180 TRF Tandem_Repeat 38282 38309 56 + . . scaffold1180 TRF Tandem_Repeat 38311 38420 184 + . . scaffold1180 TRF Tandem_Repeat 41040 41075 63 + . . scaffold1180 GLEAN promoter 46029 47028 0.998657 + . ID=CGI_10005980; scaffold1180 GLEAN mRNA 47029 56801 0.998657 + . ID=CGI_10005980; scaffold1180 TRF Tandem_Repeat 48241 49037 1398 + . . scaffold1180 GLEAN mRNA 56881 61564 0.998358 - . ID=CGI_10005981; scaffold1180 GLEAN promoter 61565 62564 0.998358 - . ID=CGI_10005981; scaffold1180 GLEAN mRNA 67909 69200 0.999999 - . ID=CGI_10005982; scaffold1180 GLEAN promoter 69201 70200 0.999999 - . ID=CGI_10005982; scaffold1180 WUBlastX LTR_Gypsy-Cigr 69214 69987 295 + . . scaffold1180 GLEAN mRNA 78649 85477 1 - . ID=CGI_10005983; scaffold1180 TRF Tandem_Repeat 78909 78942 68 + . . scaffold1180 GLEAN promoter 84792 85791 0.990975 + . ID=CGI_10005984; scaffold1180 GLEAN promoter 85478 86477 1 - . ID=CGI_10005983; scaffold1180 GLEAN mRNA 85792 95266 0.990975 + . ID=CGI_10005984; scaffold1180 GLEAN mRNA 95669 113372 0.99843 - . ID=CGI_10005985; scaffold1180 TRF Tandem_Repeat 102505 102539 61 + . . scaffold1180 TRF Tandem_Repeat 106913 107622 1119 + . . scaffold1180 GLEAN promoter 113373 114372 0.99843 - . ID=CGI_10005985; scaffold1180 TRF Tandem_Repeat 117122 117174 106 + . . scaffold1180 TRF Tandem_Repeat 119057 119112 112 + . . scaffold1180 WUBlastX LINE_RTE-X 122287 122631 99 - . . scaffold1180 WUBlastX LINE_RTE-X 122341 122667 154 - . . scaffold1180 WUBlastX LINE_RTE-X 122637 123929 514 - . . scaffold1180 WUBlastX LINE_L2 123949 124017 20 - . . scaffold1180 WUBlastX LINE_RTE-X 123964 124647 163 - . . scaffold1180 WUBlastX LINE_RTE-X 124610 124930 61 - . . scaffold1180 TRF Tandem_Repeat 124986 125037 56 + . . scaffold1180 TRF Tandem_Repeat 126563 126685 71 + . . scaffold1180 TRF Tandem_Repeat 126563 126684 65 + . . scaffold1180 TRF Tandem_Repeat 126570 126683 117 + . . scaffold1180 TRF Tandem_Repeat 126707 126758 50 + . . scaffold1180 TRF Tandem_Repeat 127423 127506 59 + . . scaffold1180 TRF Tandem_Repeat 127515 127610 60 + . . scaffold1180 TRF Tandem_Repeat 127521 127627 50 + . . scaffold1180 WUBlastX LTR_DIRS 128435 128872 244 - . . scaffold1180 WUBlastX LTR_DIRS 128824 129363 139 - . . scaffold1180 WUBlastX LTR_DIRS 129681 130001 123 - . . scaffold1180 WUBlastX LTR_DIRS 130007 131503 472 - . . scaffold1180 WUBlastX LTR_DIRS 130673 131716 253 - . . scaffold1180 WUBlastX LTR_DIRS 131691 132029 108 - . . scaffold1180 WUBlastX LTR_Gypsy 132093 132161 24 - . . scaffold1180 TRF Tandem_Repeat 134684 134721 60 + . . scaffold1180 TRF Tandem_Repeat 135948 136032 82 + . . scaffold1180 WUBlastX DNA_TcMar-Tc1 137325 137687 111 - . . scaffold1180 GLEAN promoter 137384 138383 0.531613 + . ID=CGI_10005986; scaffold1180 GLEAN mRNA 138384 140117 0.531613 + . ID=CGI_10005986; scaffold1181 TRF Tandem_Repeat 389 463 150 + . . scaffold1181 TRF Tandem_Repeat 9616 9666 102 + . . scaffold1181 TRF Tandem_Repeat 10567 11132 440 + . . scaffold1181 WUBlastX DNA_IS4EU 16884 18119 94 + . . scaffold1181 WUBlastX DNA_IS4EU 17361 18098 130 + . . scaffold1181 WUBlastX DNA_IS4EU 17457 18083 219 + . . scaffold1181 TRF Tandem_Repeat 32566 32653 131 + . . scaffold1181 WUBlastX LTR_Ngaro 35455 36108 114 + . . scaffold1181 WUBlastX LTR_Ngaro 35515 35937 206 + . . scaffold1181 WUBlastX LTR_Ngaro 36202 37749 663 + . . scaffold1181 WUBlastX LTR_Ngaro 37674 38660 244 + . . scaffold1181 GLEAN mRNA 40698 54885 0.702384 - . ID=CGI_10005106; scaffold1181 TRF Tandem_Repeat 48419 48447 58 + . . scaffold1181 GLEAN promoter 54886 55885 0.702384 - . ID=CGI_10005106; scaffold1181 TRF Tandem_Repeat 58420 58486 134 + . . scaffold1181 GLEAN promoter 67064 68063 0.378894 + . ID=CGI_10005107; scaffold1181 GLEAN mRNA 68064 85746 0.378894 + . ID=CGI_10005107; scaffold1181 TRF Tandem_Repeat 75962 76052 164 + . . scaffold1181 TRF Tandem_Repeat 82083 82140 116 + . . scaffold1181 TRF Tandem_Repeat 82440 82477 67 + . . scaffold1181 GLEAN promoter 91276 92275 0.88147 + . ID=CGI_10005108; scaffold1181 GLEAN mRNA 92276 98252 0.88147 + . ID=CGI_10005108; scaffold1181 TRF Tandem_Repeat 97232 97272 57 + . . scaffold1181 TRF Tandem_Repeat 99875 99908 52 + . . scaffold1181 WUBlastX LINE_L2 108837 109550 20 + . . scaffold1181 WUBlastX LINE_CR1 108957 109535 90 + . . scaffold1181 WUBlastX LINE_CR1-L2 109059 109550 213 + . . scaffold1181 WUBlastX LINE_L2 109585 109911 68 + . . scaffold1181 GLEAN promoter 112253 113252 1 + . ID=CGI_10005109; scaffold1181 GLEAN mRNA 113253 114468 1 + . ID=CGI_10005109; scaffold1181 GLEAN promoter 116327 117326 1 + . ID=CGI_10005110; scaffold1181 GLEAN mRNA 117327 118642 1 + . ID=CGI_10005110; scaffold1182 GLEAN mRNA 6461 22128 0.356892 - . ID=CGI_10003511; scaffold1182 TRF Tandem_Repeat 20793 20833 82 + . . scaffold1182 GLEAN promoter 22129 23128 0.356892 - . ID=CGI_10003511; scaffold1182 GLEAN promoter 22472 23471 0.934044 + . ID=CGI_10003512; scaffold1182 GLEAN mRNA 23472 32687 0.934044 + . ID=CGI_10003512; scaffold1182 TRF Tandem_Repeat 32673 32835 212 + . . scaffold1182 TRF Tandem_Repeat 32773 33155 577 + . . scaffold1182 TRF Tandem_Repeat 39863 40274 498 + . . scaffold1182 TRF Tandem_Repeat 41068 41233 172 + . . scaffold1182 TRF Tandem_Repeat 42011 42093 96 + . . scaffold1182 TRF Tandem_Repeat 42125 43275 2047 + . . scaffold1182 WUBlastX RC_Helitron 44424 45044 141 - . . scaffold1182 WUBlastX RC_Helitron 44520 45974 549 - . . scaffold1182 WUBlastX RC_Helitron 44568 45791 977 - . . scaffold1182 WUBlastX RC_Helitron 45974 47173 284 - . . scaffold1182 WUBlastX RC_Helitron 47237 48064 198 - . . scaffold1182 GLEAN mRNA 49175 60548 0.957451 - . ID=CGI_10003513; scaffold1182 TRF Tandem_Repeat 56118 56152 56 + . . scaffold1182 TRF Tandem_Repeat 59678 59839 54 + . . scaffold1182 TRF Tandem_Repeat 59701 59865 87 + . . scaffold1182 GLEAN promoter 60549 61548 0.957451 - . ID=CGI_10003513; scaffold1182 TRF Tandem_Repeat 68193 68455 262 + . . scaffold1182 TRF Tandem_Repeat 68197 68435 189 + . . scaffold1182 TRF Tandem_Repeat 68197 68437 159 + . . scaffold1183 GLEAN promoter 4027 5026 0.533005 + . ID=CGI_10002529; scaffold1183 GLEAN mRNA 5027 19209 0.533005 + . ID=CGI_10002529; scaffold1183 GLEAN mRNA 34876 36429 0.999372 - . ID=CGI_10002530; scaffold1183 GLEAN promoter 36430 37429 0.999372 - . ID=CGI_10002530; scaffold1183 GLEAN promoter 36783 37782 0.999415 + . ID=CGI_10002531; scaffold1183 GLEAN mRNA 37783 46552 0.999415 + . ID=CGI_10002531; scaffold1184 WUBlastX LINE_L1 3 2024 364 - . . scaffold1184 WUBlastX LINE_CR1 2469 3482 221 - . . scaffold1184 WUBlastX LINE_L1-Tx1 2826 3470 222 - . . scaffold1184 WUBlastX LTR_Ngaro 8799 9029 70 - . . scaffold1184 WUBlastX LTR_Ngaro 9068 9355 75 - . . scaffold1184 WUBlastX LTR_Ngaro 9122 9322 91 - . . scaffold1184 WUBlastX LTR_Ngaro 9839 9895 21 - . . scaffold1184 WUBlastX LINE_RTE-X 15830 16576 46 - . . scaffold1184 WUBlastX LINE_RTE-X 15983 17029 317 - . . scaffold1184 WUBlastX LINE_RTE-X 17031 18143 571 - . . scaffold1184 GLEAN promoter 20614 21613 0.999547 + . ID=CGI_10001476; scaffold1184 GLEAN mRNA 21614 23948 0.999547 + . ID=CGI_10001476; scaffold1184 TRF Tandem_Repeat 21824 21877 108 + . . scaffold1185 GLEAN mRNA 4271 4645 1 - . ID=CGI_10006250; scaffold1185 GLEAN promoter 4646 5645 1 - . ID=CGI_10006250; scaffold1185 GLEAN mRNA 6308 7292 0.987245 - . ID=CGI_10006251; scaffold1185 GLEAN promoter 7293 8292 0.987245 - . ID=CGI_10006251; scaffold1185 GLEAN promoter 24544 25543 0.537752 + . ID=CGI_10006252; scaffold1185 GLEAN mRNA 25544 34647 0.537752 + . ID=CGI_10006252; scaffold1185 GLEAN mRNA 40783 42750 0.99967 - . ID=CGI_10006253; scaffold1185 GLEAN promoter 42751 43750 0.99967 - . ID=CGI_10006253; scaffold1185 GLEAN mRNA 45609 51244 0.702385 - . ID=CGI_10006254; scaffold1185 GLEAN promoter 51245 52244 0.702385 - . ID=CGI_10006254; scaffold1185 GLEAN promoter 55302 56301 1 + . ID=CGI_10006255; scaffold1185 GLEAN mRNA 56302 56763 1 + . ID=CGI_10006255; scaffold1185 GLEAN mRNA 58317 63954 0.99935 - . ID=CGI_10006256; scaffold1185 GLEAN promoter 63955 64954 0.99935 - . ID=CGI_10006256; scaffold1185 GLEAN promoter 70060 71059 0.994841 + . ID=CGI_10006257; scaffold1185 GLEAN mRNA 71060 100987 0.994841 + . ID=CGI_10006257; scaffold1185 GLEAN mRNA 102232 107106 1 - . ID=CGI_10006258; scaffold1185 GLEAN promoter 107107 108106 1 - . ID=CGI_10006258; scaffold1185 GLEAN mRNA 107500 109728 1 - . ID=CGI_10006259; scaffold1185 GLEAN promoter 109729 110728 1 - . ID=CGI_10006259; scaffold1185 GLEAN mRNA 110616 110834 0.999372 - . ID=CGI_10006260; scaffold1185 GLEAN promoter 110835 111834 0.999372 - . ID=CGI_10006260; scaffold1185 GLEAN mRNA 113246 115303 1 - . ID=CGI_10006261; scaffold1185 GLEAN promoter 115304 116303 1 - . ID=CGI_10006261; scaffold1185 GLEAN mRNA 116923 120505 0.511143 - . ID=CGI_10006262; scaffold1185 GLEAN promoter 120225 121224 0.999988 + . ID=CGI_10006263; scaffold1185 GLEAN promoter 120506 121505 0.511143 - . ID=CGI_10006262; scaffold1185 GLEAN mRNA 121225 141352 0.999988 + . ID=CGI_10006263; scaffold1186 GLEAN promoter 750 1749 0.354207 + . ID=CGI_10010590; scaffold1186 GLEAN mRNA 1750 5173 0.354207 + . ID=CGI_10010590; scaffold1186 TRF Tandem_Repeat 7876 7956 117 + . . scaffold1186 TRF Tandem_Repeat 10448 10488 82 + . . scaffold1186 GLEAN promoter 11286 12285 0.603753 + . ID=CGI_10010591; scaffold1186 GLEAN mRNA 12286 12480 0.603753 + . ID=CGI_10010591; scaffold1186 TRF Tandem_Repeat 18681 18750 140 + . . scaffold1186 WUBlastX LTR_Ngaro 24907 25446 55 - . . scaffold1186 WUBlastX LTR_Ngaro 25198 25446 75 - . . scaffold1186 TRF Tandem_Repeat 27421 27481 50 + . . scaffold1186 WUBlastX DNA_TcMar-Tc1 31720 32259 268 + . . scaffold1186 WUBlastX DNA_TcMar-Tc1 31966 32328 76 + . . scaffold1186 GLEAN promoter 34333 35332 0.978307 + . ID=CGI_10010592; scaffold1186 GLEAN mRNA 35333 44321 0.978307 + . ID=CGI_10010592; scaffold1186 TRF Tandem_Repeat 40039 40097 109 + . . scaffold1186 WUBlastX DNA_TcMar-Tc1 58961 59146 29 + . . scaffold1186 WUBlastX DNA_TcMar-Tc1 59012 59203 57 + . . scaffold1186 WUBlastX DNA_TcMar-Tc1 59344 59634 65 + . . scaffold1186 WUBlastX DNA_TcMar-Tc1 59431 59634 75 + . . scaffold1186 GLEAN promoter 61909 62908 0.584728 + . ID=CGI_10010593; scaffold1186 GLEAN mRNA 62909 95132 0.584728 + . ID=CGI_10010593; scaffold1186 WUBlastX LINE_RTE-X 70729 70809 46 + . . scaffold1186 WUBlastX LINE_RTE-X 70821 70979 25 + . . scaffold1186 WUBlastX LINE_RTE-X 71752 71904 40 + . . scaffold1186 WUBlastX LINE_RTE-X 71791 71904 45 + . . scaffold1186 TRF Tandem_Repeat 73224 73261 58 + . . scaffold1186 TRF Tandem_Repeat 87463 87529 71 + . . scaffold1186 TRF Tandem_Repeat 90316 90361 65 + . . scaffold1186 TRF Tandem_Repeat 122428 122471 88 + . . scaffold1186 WUBlastX LINE_Penelope 123286 123717 169 + . . scaffold1186 WUBlastX LINE_Penelope 123370 124656 499 + . . scaffold1186 WUBlastX LINE_Penelope 123775 124842 212 + . . scaffold1186 WUBlastX LINE_Penelope 130868 132181 520 + . . scaffold1186 WUBlastX LINE_Penelope 131261 132457 378 + . . scaffold1186 WUBlastX LTR_Gypsy 132571 133863 542 - . . scaffold1186 WUBlastX LTR_Gypsy 133459 133986 114 - . . scaffold1186 WUBlastX LTR_Gypsy 134016 134819 84 - . . scaffold1186 WUBlastX LTR_Gypsy 134121 135038 65 - . . scaffold1186 WUBlastX LTR_Gypsy 134178 134825 93 - . . scaffold1186 WUBlastX LTR_Gypsy 134271 134819 171 - . . scaffold1186 GLEAN promoter 136115 137114 0.615683 + . ID=CGI_10010594; scaffold1186 GLEAN mRNA 137115 139075 0.615683 + . ID=CGI_10010594; scaffold1186 WUBlastX DNA_TcMar-Ant1 140677 140949 22 + . . scaffold1186 WUBlastX DNA_TcMar-Ant1 140978 141118 41 + . . scaffold1186 GLEAN promoter 148762 149761 0.989957 + . ID=CGI_10010595; scaffold1186 GLEAN mRNA 149762 154989 0.989957 + . ID=CGI_10010595; scaffold1186 WUBlastX LINE_RTE-RTE 155770 156789 88 + . . scaffold1186 WUBlastX LINE_RTE-BovB 155929 158844 2173 + . . scaffold1186 TRF Tandem_Repeat 162982 163088 117 + . . scaffold1186 TRF Tandem_Repeat 164476 164642 100 + . . scaffold1186 TRF Tandem_Repeat 164531 164642 188 + . . scaffold1186 WUBlastX LTR_Pao 179425 179484 26 + . . scaffold1186 WUBlastX LTR_Pao 179489 179848 238 + . . scaffold1186 WUBlastX DNA_IS4EU 181573 182085 74 + . . scaffold1186 WUBlastX DNA_IS4EU 182009 182920 116 + . . scaffold1186 WUBlastX DNA_Kolobok-IS4 182168 182935 158 + . . scaffold1186 WUBlastX DNA_Kolobok-IS4 182288 182917 170 + . . scaffold1186 WUBlastX DNA_Kolobok-IS4 183068 184126 480 - . . scaffold1186 GLEAN mRNA 184618 184851 1 - . ID=CGI_10010596; scaffold1186 WUBlastX DNA_IS4EU 184672 184812 31 - . . scaffold1186 GLEAN promoter 184852 185851 1 - . ID=CGI_10010596; scaffold1186 GLEAN promoter 186396 187395 0.578632 + . ID=CGI_10010597; scaffold1186 TRF Tandem_Repeat 186884 186918 70 + . . scaffold1186 GLEAN mRNA 187396 222353 0.578632 + . ID=CGI_10010597; scaffold1186 WUBlastX LTR_Pao 200177 200539 46 + . . scaffold1186 WUBlastX LTR_Pao 200264 202597 735 + . . scaffold1186 WUBlastX LTR_Pao 200612 202279 968 + . . scaffold1186 WUBlastX LTR_Pao 203615 203848 74 + . . scaffold1186 WUBlastX LTR_Pao 203675 203848 111 + . . scaffold1186 WUBlastX LTR_Pao 203702 203848 165 + . . scaffold1186 WUBlastX LTR_Pao 203845 205638 1384 + . . scaffold1186 WUBlastX LTR_Pao 205638 206678 956 + . . scaffold1186 TRF Tandem_Repeat 210219 210271 97 + . . scaffold1186 WUBlastX LTR_Gypsy 210574 210894 36 + . . scaffold1186 WUBlastX LTR_Gypsy 210646 210921 64 + . . scaffold1186 WUBlastX LTR_Gypsy 210694 210909 64 + . . scaffold1186 WUBlastX LTR_Gypsy 210954 212435 377 + . . scaffold1186 WUBlastX LTR_Gypsy 212019 212528 300 + . . scaffold1186 WUBlastX LTR_Gypsy 212504 212761 259 + . . scaffold1186 WUBlastX LTR_Gypsy 212758 214686 444 + . . scaffold1186 TRF Tandem_Repeat 217534 217572 51 + . . scaffold1186 TRF Tandem_Repeat 221602 221656 110 + . . scaffold1186 GLEAN mRNA 224167 244631 0.351511 - . ID=CGI_10010599; scaffold1186 TRF Tandem_Repeat 225105 225163 118 + . . scaffold1186 WUBlastX LINE_L1 236770 236877 39 + . . scaffold1186 WUBlastX LINE_L1-Tx1 236779 236850 44 + . . scaffold1186 WUBlastX LINE_L1-Tx1 236970 237062 25 + . . scaffold1186 WUBlastX LINE_L1-Tx1 237198 238337 319 + . . scaffold1186 WUBlastX LINE_L1 237724 238560 78 + . . scaffold1186 WUBlastX LINE_L1-Tx1 238333 238812 21 + . . scaffold1186 WUBlastX LINE_Penelope 240392 240832 93 + . . scaffold1186 WUBlastX LINE_Penelope 240395 240985 55 + . . scaffold1186 WUBlastX LINE_Penelope 240991 241101 42 + . . scaffold1186 WUBlastX DNA_Crypton 243345 243824 173 - . . scaffold1186 WUBlastX DNA_Crypton 243848 244318 69 - . . scaffold1186 GLEAN promoter 244632 245631 0.351511 - . ID=CGI_10010599; scaffold1186 TRF Tandem_Repeat 254789 254857 138 + . . scaffold1186 WUBlastX DNA_IS4EU 262106 262306 71 + . . scaffold1186 WUBlastX DNA_IS4EU 264063 264848 87 + . . scaffold1186 WUBlastX DNA_IS4EU 264171 264833 238 + . . scaffold1186 TRF Tandem_Repeat 265417 265509 170 + . . scaffold1186 WUBlastX DNA_IS4EU 265739 266356 345 - . . scaffold1186 WUBlastX DNA_IS4EU 266358 266612 75 - . . scaffold1186 WUBlastX LINE_L1-Tx1 268946 269476 205 - . . scaffold1186 WUBlastX LINE_L1-Tx1 269126 269554 51 - . . scaffold1187 TRF Tandem_Repeat 6100 6261 191 + . . scaffold1187 GLEAN mRNA 12113 12340 0.551386 - . ID=CGI_10004153; scaffold1187 GLEAN promoter 12341 13340 0.551386 - . ID=CGI_10004153; scaffold1187 GLEAN promoter 17642 18641 0.89771 + . ID=CGI_10004154; scaffold1187 GLEAN mRNA 18642 23120 0.89771 + . ID=CGI_10004154; scaffold1187 GLEAN promoter 23171 24170 0.999173 + . ID=CGI_10004155; scaffold1187 GLEAN mRNA 24171 28799 0.999173 + . ID=CGI_10004155; scaffold1187 GLEAN mRNA 28869 39370 1 - . ID=CGI_10004156; scaffold1187 GLEAN promoter 39371 40370 1 - . ID=CGI_10004156; scaffold1187 TRF Tandem_Repeat 40563 40646 168 + . . scaffold1187 WUBlastX DNA_TcMar-Marin 41806 42411 196 + . . scaffold1187 WUBlastX DNA_TcMar-Marin 42019 42411 240 + . . scaffold1187 WUBlastX DNA_TcMar-Marin 42070 42402 251 + . . scaffold1187 WUBlastX DNA_TcMar-Marin 42611 42997 239 + . . scaffold1187 WUBlastX LINE_RTE-BovB 43778 44245 120 - . . scaffold1187 WUBlastX LTR_Gypsy 47211 47786 394 + . . scaffold1187 WUBlastX LTR_Gypsy 47286 47948 62 + . . scaffold1187 WUBlastX LTR_Copia 48017 48334 20 + . . scaffold1187 WUBlastX LTR_Gypsy 48265 48561 107 + . . scaffold1187 WUBlastX LTR_Gypsy 48510 48653 41 + . . scaffold1187 WUBlastX LTR_Gypsy 48635 49507 488 + . . scaffold1187 WUBlastX LTR_Gypsy 49509 50834 582 + . . scaffold1187 WUBlastX LTR_Gypsy 49908 51533 1503 + . . scaffold1187 WUBlastX LTR_Gypsy 51539 52525 720 + . . scaffold1187 WUBlastX LINE_L1 59790 60311 43 - . . scaffold1187 WUBlastX LINE_L1-Tx1 59904 60320 73 - . . scaffold1187 WUBlastX LINE_L1-Tx1 60290 60865 103 - . . scaffold1187 WUBlastX LINE_L1 60800 60919 24 - . . scaffold1187 GLEAN mRNA 68709 69197 0.908955 - . ID=CGI_10004158; scaffold1187 GLEAN promoter 69198 70197 0.908955 - . ID=CGI_10004158; scaffold1187 TRF Tandem_Repeat 69681 69723 50 + . . scaffold1187 TRF Tandem_Repeat 70391 70482 109 + . . scaffold1187 TRF Tandem_Repeat 70561 70694 180 + . . scaffold1187 GLEAN promoter 71155 72154 0.835562 + . ID=CGI_10004159; scaffold1187 WUBlastX LINE_L1-Tx1 71558 71761 37 + . . scaffold1187 WUBlastX LINE_L1 71558 71698 81 + . . scaffold1187 WUBlastX LINE_L1-Tx1 72029 72106 30 + . . scaffold1187 GLEAN mRNA 72155 80343 0.835562 + . ID=CGI_10004159; scaffold1187 GLEAN mRNA 83570 90560 0.998821 - . ID=CGI_10004160; scaffold1187 TRF Tandem_Repeat 84261 84593 335 + . . scaffold1187 GLEAN promoter 90561 91560 0.998821 - . ID=CGI_10004160; scaffold1188 WUBlastX DNA_TcMar-Marin 10653 11162 98 - . . scaffold1188 WUBlastX DNA_TcMar-Marin 10770 11123 115 - . . scaffold1188 WUBlastX DNA_TcMar-Marin 10827 11165 175 - . . scaffold1188 WUBlastX DNA_TcMar-Marin 10866 11309 72 - . . scaffold1188 GLEAN mRNA 14009 14212 0.618241 - . ID=CGI_10025455; scaffold1188 GLEAN promoter 14213 15212 0.618241 - . ID=CGI_10025455; scaffold1188 GLEAN promoter 29975 30974 1 + . ID=CGI_10025456; scaffold1188 GLEAN mRNA 30975 42286 1 + . ID=CGI_10025456; scaffold1188 TRF Tandem_Repeat 31926 31972 94 + . . scaffold1188 TRF Tandem_Repeat 35612 35661 100 + . . scaffold1188 WUBlastX DNA_TcMar-Tc1 49737 50288 193 + . . scaffold1188 WUBlastX DNA_TcMar-Tc1 50288 50671 109 + . . scaffold1188 WUBlastX LINE_L2 76260 76370 47 - . . scaffold1188 WUBlastX LINE_L2 76370 76738 92 - . . scaffold1188 WUBlastX LINE_L2 76737 76823 34 - . . scaffold1188 WUBlastX LINE_CR1 76758 76856 39 - . . scaffold1188 WUBlastX LINE_CR1 76758 76898 28 - . . scaffold1188 WUBlastX LINE_L2 76761 76823 50 - . . scaffold1188 WUBlastX LINE_R2-Hero 78572 78712 23 - . . scaffold1188 WUBlastX LINE_R2 78624 79010 70 - . . scaffold1188 WUBlastX LINE_R2-Hero 78711 81929 2619 - . . scaffold1188 WUBlastX LINE_R2-Hero 81618 82007 100 - . . scaffold1188 WUBlastX LINE_R2-Hero 82001 82078 30 - . . scaffold1188 TRF Tandem_Repeat 86911 86948 58 + . . scaffold1188 WUBlastX LINE_L2 88924 89361 35 + . . scaffold1188 WUBlastX LINE_L2 89031 89228 37 + . . scaffold1188 WUBlastX LINE_L2 89085 89234 65 + . . scaffold1188 WUBlastX LINE_CR1-L2 89103 89228 81 + . . scaffold1188 WUBlastX LINE_L2 89203 89349 56 + . . scaffold1188 WUBlastX LINE_CR1-L2 89372 89554 76 + . . scaffold1188 WUBlastX LINE_CR1 89375 89605 71 + . . scaffold1188 TRF Tandem_Repeat 107292 107387 86 + . . scaffold1188 GLEAN promoter 107512 108511 0.999999 + . ID=CGI_10025457; scaffold1188 GLEAN mRNA 108512 115813 0.999999 + . ID=CGI_10025457; scaffold1188 TRF Tandem_Repeat 112828 114204 985 + . . scaffold1188 TRF Tandem_Repeat 112866 114204 1384 + . . scaffold1188 WUBlastX LTR_Ngaro 118891 119142 140 - . . scaffold1188 WUBlastX LTR_Ngaro 118891 119205 125 - . . scaffold1188 WUBlastX DNA_hAT-hATw 127096 127929 29 + . . scaffold1188 WUBlastX DNA_hAT-hATw 127096 127782 109 + . . scaffold1188 GLEAN mRNA 139459 150376 0.999392 - . ID=CGI_10025458; scaffold1188 GLEAN promoter 150377 151376 0.999392 - . ID=CGI_10025458; scaffold1188 GLEAN mRNA 156973 157491 0.999983 - . ID=CGI_10025459; scaffold1188 GLEAN promoter 157492 158491 0.999983 - . ID=CGI_10025459; scaffold1188 WUBlastX LTR_Copia 157734 157919 27 - . . scaffold1188 WUBlastX LTR_Gypsy 157906 159177 523 - . . scaffold1188 WUBlastX LTR_Gypsy-Cigr 157927 159003 675 - . . scaffold1188 WUBlastX LTR_Gypsy 159229 159282 20 - . . scaffold1188 GLEAN mRNA 159311 176924 0.555609 - . ID=CGI_10025460; scaffold1188 WUBlastX LINE_Penelope 164809 165408 205 - . . scaffold1188 WUBlastX LINE_Penelope 164812 165516 116 - . . scaffold1188 WUBlastX LINE_Penelope 165395 165580 73 - . . scaffold1188 WUBlastX LTR_Copia 170517 170732 20 - . . scaffold1188 WUBlastX LTR_Gypsy-Cigr 170978 172444 596 - . . scaffold1188 WUBlastX LTR_Gypsy-Cigr 171257 173533 1084 - . . scaffold1188 WUBlastX LTR_Gypsy 173475 174059 298 - . . scaffold1188 WUBlastX LTR_Gypsy-Cigr 173484 173930 432 - . . scaffold1188 WUBlastX LINE_L1-Tx1 173931 175250 183 + . . scaffold1188 WUBlastX LTR_Gypsy 175477 176370 129 - . . scaffold1188 WUBlastX LTR_Gypsy 176089 176592 79 - . . scaffold1188 WUBlastX LTR_Gypsy 176592 177023 51 - . . scaffold1188 GLEAN promoter 176925 177924 0.555609 - . ID=CGI_10025460; scaffold1188 GLEAN promoter 194896 195895 0.903842 + . ID=CGI_10025461; scaffold1188 GLEAN mRNA 195896 200300 0.903842 + . ID=CGI_10025461; scaffold1188 GLEAN mRNA 201691 209926 0.974251 - . ID=CGI_10025462; scaffold1188 WUBlastX LTR_Gypsy 205417 205755 27 - . . scaffold1188 WUBlastX LTR_Gypsy 205588 205800 76 - . . scaffold1188 WUBlastX LTR_Gypsy-Cigr 205624 206739 178 - . . scaffold1188 WUBlastX LTR_Gypsy 207150 207197 21 - . . scaffold1188 WUBlastX LTR_Gypsy 207571 208014 83 - . . scaffold1188 WUBlastX LTR_Gypsy 207619 208236 36 - . . scaffold1188 GLEAN promoter 209927 210926 0.974251 - . ID=CGI_10025462; scaffold1188 GLEAN promoter 211895 212894 0.80625 + . ID=CGI_10025463; scaffold1188 GLEAN mRNA 212895 226684 0.80625 + . ID=CGI_10025463; scaffold1188 WUBlastX LINE_Penelope 216082 216906 42 + . . scaffold1188 WUBlastX LINE_Penelope 216559 216909 67 + . . scaffold1188 WUBlastX LINE_Penelope 216610 216774 71 + . . scaffold1188 WUBlastX DNA_Kolobok 217203 217409 34 + . . scaffold1188 WUBlastX DNA_Kolobok 217203 217361 75 + . . scaffold1188 WUBlastX DNA_Kolobok 218048 218254 79 + . . scaffold1188 GLEAN mRNA 227569 231953 1 - . ID=CGI_10025464; scaffold1188 TRF Tandem_Repeat 229295 229339 56 + . . scaffold1188 GLEAN promoter 231954 232953 1 - . ID=CGI_10025464; scaffold1188 WUBlastX DNA_hAT-Ac 236915 237223 47 + . . scaffold1188 WUBlastX DNA_hAT-Ac 237035 237145 55 + . . scaffold1188 WUBlastX DNA_hAT-Ac 237314 237775 120 + . . scaffold1188 WUBlastX DNA_hAT-Ac 237693 238316 192 + . . scaffold1188 WUBlastX DNA_hAT-Hobo 238367 238684 49 + . . scaffold1188 WUBlastX DNA_hAT-Ac 238618 238761 56 + . . scaffold1188 WUBlastX DNA_hAT-Ac 238660 238845 44 + . . scaffold1188 WUBlastX DNA_hAT-Ac 238702 238800 57 + . . scaffold1188 GLEAN mRNA 245130 250209 0.990448 - . ID=CGI_10025465; scaffold1188 GLEAN promoter 250210 251209 0.990448 - . ID=CGI_10025465; scaffold1188 TRF Tandem_Repeat 254402 254426 50 + . . scaffold1188 GLEAN promoter 260188 261187 0.999569 + . ID=CGI_10025466; scaffold1188 GLEAN mRNA 261188 264874 0.999569 + . ID=CGI_10025466; scaffold1188 TRF Tandem_Repeat 269148 269227 60 + . . scaffold1188 TRF Tandem_Repeat 269150 269209 65 + . . scaffold1188 TRF Tandem_Repeat 279964 280011 78 + . . scaffold1188 GLEAN promoter 280129 281128 0.924496 + . ID=CGI_10025467; scaffold1188 GLEAN mRNA 281129 295835 0.924496 + . ID=CGI_10025467; scaffold1188 WUBlastX LTR_Ngaro 288104 288358 75 + . . scaffold1188 WUBlastX LTR_Ngaro 288143 288358 112 + . . scaffold1188 WUBlastX LTR_Ngaro 288746 289171 238 + . . scaffold1188 WUBlastX LTR_Ngaro 288924 290150 531 + . . scaffold1188 WUBlastX LTR_Ngaro 289167 290327 735 + . . scaffold1188 WUBlastX LTR_Ngaro 290297 290761 190 + . . scaffold1188 WUBlastX LTR_Ngaro 290760 291329 302 + . . scaffold1188 GLEAN mRNA 296982 298698 1 - . ID=CGI_10025468; scaffold1188 GLEAN promoter 298699 299698 1 - . ID=CGI_10025468; scaffold1188 WUBlastX LTR_Ngaro 305794 306246 266 + . . scaffold1188 WUBlastX LTR_Ngaro 306237 307139 411 + . . scaffold1188 GLEAN promoter 306336 307335 0.597544 + . ID=CGI_10025469; scaffold1188 GLEAN mRNA 307336 307848 0.597544 + . ID=CGI_10025469; scaffold1188 TRF Tandem_Repeat 314191 315453 1596 + . . scaffold1188 TRF Tandem_Repeat 317813 317862 75 + . . scaffold1188 GLEAN mRNA 321104 325650 0.481364 - . ID=CGI_10025470; scaffold1188 TRF Tandem_Repeat 321984 322049 62 + . . scaffold1188 GLEAN promoter 325651 326650 0.481364 - . ID=CGI_10025470; scaffold1188 TRF Tandem_Repeat 326240 326269 51 + . . scaffold1188 GLEAN mRNA 328415 329050 1 - . ID=CGI_10025471; scaffold1188 GLEAN promoter 329051 330050 1 - . ID=CGI_10025471; scaffold1188 GLEAN mRNA 329656 332337 0.980599 - . ID=CGI_10025472; scaffold1188 GLEAN promoter 332338 333337 0.980599 - . ID=CGI_10025472; scaffold1188 TRF Tandem_Repeat 332400 332457 107 + . . scaffold1188 GLEAN promoter 334741 335740 0.426305 + . ID=CGI_10025473; scaffold1188 GLEAN mRNA 335741 346186 0.426305 + . ID=CGI_10025473; scaffold1188 TRF Tandem_Repeat 347209 347260 104 + . . scaffold1188 WUBlastX DNA_Sola 349434 349982 186 + . . scaffold1188 WUBlastX DNA_Sola 349975 350778 383 + . . scaffold1188 WUBlastX DNA_Sola 350777 351430 292 + . . scaffold1188 WUBlastX DNA_Sola 352538 353128 154 + . . scaffold1188 TRF Tandem_Repeat 355479 356445 854 + . . scaffold1188 WUBlastX LINE_L2 358831 359100 76 - . . scaffold1188 WUBlastX LINE_CR1-L2 358831 359031 86 - . . scaffold1188 WUBlastX LINE_CR1-L2 358831 359166 70 - . . scaffold1188 GLEAN mRNA 387340 392454 1 - . ID=CGI_10025474; scaffold1188 TRF Tandem_Repeat 389624 389757 99 + . . scaffold1188 TRF Tandem_Repeat 392317 392354 58 + . . scaffold1188 GLEAN promoter 392455 393454 1 - . ID=CGI_10025474; scaffold1188 TRF Tandem_Repeat 392714 392758 81 + . . scaffold1188 TRF Tandem_Repeat 392820 392867 96 + . . scaffold1188 TRF Tandem_Repeat 393108 393138 62 + . . scaffold1188 WUBlastX DNA_TcMar-Tc1 398716 399747 401 + . . scaffold1188 TRF Tandem_Repeat 400211 400240 51 + . . scaffold1188 GLEAN mRNA 404833 425213 0.591485 - . ID=CGI_10025475; scaffold1188 GLEAN promoter 425214 426213 0.591485 - . ID=CGI_10025475; scaffold1188 GLEAN mRNA 428823 435037 0.99891 - . ID=CGI_10025477; scaffold1188 GLEAN promoter 435038 436037 0.99891 - . ID=CGI_10025477; scaffold1188 GLEAN mRNA 437049 458688 0.299318 - . ID=CGI_10025478; scaffold1188 GLEAN promoter 458689 459688 0.299318 - . ID=CGI_10025478; scaffold1188 GLEAN mRNA 459213 467928 1 - . ID=CGI_10025479; scaffold1188 GLEAN promoter 467192 468191 1 + . ID=CGI_10025480; scaffold1188 GLEAN promoter 467929 468928 1 - . ID=CGI_10025479; scaffold1188 GLEAN mRNA 468192 485295 1 + . ID=CGI_10025480; scaffold1188 TRF Tandem_Repeat 480655 480747 186 + . . scaffold1188 GLEAN promoter 485992 486991 0.92182 + . ID=CGI_10025481; scaffold1188 GLEAN mRNA 486992 493000 0.92182 + . ID=CGI_10025481; scaffold1188 GLEAN mRNA 498707 501033 0.937846 - . ID=CGI_10025482; scaffold1188 GLEAN promoter 501034 502033 0.937846 - . ID=CGI_10025482; scaffold1188 TRF Tandem_Repeat 502386 503096 996 + . . scaffold1188 TRF Tandem_Repeat 503100 503150 57 + . . scaffold1188 TRF Tandem_Repeat 503103 503149 58 + . . scaffold1188 TRF Tandem_Repeat 503107 503145 60 + . . scaffold1188 GLEAN mRNA 503522 506490 0.593622 - . ID=CGI_10025483; scaffold1188 GLEAN promoter 506491 507490 0.593622 - . ID=CGI_10025483; scaffold1188 WUBlastX LINE_RTE-BovB 512757 512945 112 + . . scaffold1188 WUBlastX LINE_RTE-BovB 512950 513195 118 + . . scaffold1188 WUBlastX LINE_RTE-BovB 513251 513442 181 + . . scaffold1188 WUBlastX LINE_RTE-BovB 513321 513629 80 + . . scaffold1188 WUBlastX LINE_RTE-BovB 513643 514875 181 + . . scaffold1188 WUBlastX LINE_RTE-BovB 514506 515030 105 + . . scaffold1188 WUBlastX LINE_RTE-BovB 516221 516334 100 + . . scaffold1188 WUBlastX LINE_RTE-BovB 516352 516423 27 + . . scaffold1188 TRF Tandem_Repeat 517524 517556 66 + . . scaffold1188 WUBlastX LINE_RTE-X 519516 519920 123 - . . scaffold1188 GLEAN promoter 523746 524745 0.999429 + . ID=CGI_10025484; scaffold1188 GLEAN mRNA 524746 544144 0.999429 + . ID=CGI_10025484; scaffold1188 TRF Tandem_Repeat 526520 526553 59 + . . scaffold1188 TRF Tandem_Repeat 532979 533263 273 + . . scaffold1188 TRF Tandem_Repeat 540852 540917 69 + . . scaffold1188 TRF Tandem_Repeat 540852 540930 72 + . . scaffold1188 TRF Tandem_Repeat 540855 540911 78 + . . scaffold1188 TRF Tandem_Repeat 540993 541035 59 + . . scaffold1188 TRF Tandem_Repeat 544405 544557 88 + . . scaffold1188 TRF Tandem_Repeat 545861 546306 892 + . . scaffold1188 TRF Tandem_Repeat 546832 546987 179 + . . scaffold1188 TRF Tandem_Repeat 547248 547427 281 + . . scaffold1188 GLEAN promoter 551705 552704 0.985821 + . ID=CGI_10025485; scaffold1188 GLEAN mRNA 552705 557672 0.985821 + . ID=CGI_10025485; scaffold1188 TRF Tandem_Repeat 558201 558523 555 + . . scaffold1188 TRF Tandem_Repeat 560115 560190 80 + . . scaffold1188 GLEAN promoter 566888 567887 1 + . ID=CGI_10025486; scaffold1188 GLEAN mRNA 567888 574960 1 + . ID=CGI_10025486; scaffold1188 TRF Tandem_Repeat 570488 570579 116 + . . scaffold1188 TRF Tandem_Repeat 570775 570933 151 + . . scaffold1188 TRF Tandem_Repeat 570987 571078 87 + . . scaffold1188 TRF Tandem_Repeat 577404 577680 447 + . . scaffold1188 GLEAN promoter 582120 583119 0.614301 + . ID=CGI_10025487; scaffold1188 GLEAN mRNA 583120 598436 0.614301 + . ID=CGI_10025487; scaffold1188 TRF Tandem_Repeat 584827 585044 296 + . . scaffold1188 TRF Tandem_Repeat 588527 588862 399 + . . scaffold1188 TRF Tandem_Repeat 588553 588667 110 + . . scaffold1188 TRF Tandem_Repeat 588576 588730 79 + . . scaffold1188 TRF Tandem_Repeat 588914 589078 127 + . . scaffold1188 TRF Tandem_Repeat 591328 591577 353 + . . scaffold1188 TRF Tandem_Repeat 591336 591604 194 + . . scaffold1188 TRF Tandem_Repeat 594652 594984 380 + . . scaffold1188 GLEAN promoter 600106 601105 0.759496 + . ID=CGI_10025488; scaffold1188 GLEAN mRNA 601106 610118 0.759496 + . ID=CGI_10025488; scaffold1188 TRF Tandem_Repeat 602702 602905 214 + . . scaffold1188 TRF Tandem_Repeat 603964 604175 239 + . . scaffold1188 TRF Tandem_Repeat 606486 608206 2008 + . . scaffold1188 TRF Tandem_Repeat 606486 608206 2024 + . . scaffold1188 TRF Tandem_Repeat 606486 608233 1772 + . . scaffold1188 GLEAN promoter 609990 610989 0.993837 + . ID=CGI_10025489; scaffold1188 GLEAN mRNA 610990 614878 0.993837 + . ID=CGI_10025489; scaffold1188 TRF Tandem_Repeat 611329 612327 1005 + . . scaffold1188 TRF Tandem_Repeat 613651 614056 751 + . . scaffold1188 GLEAN mRNA 616674 621967 0.634377 - . ID=CGI_10025490; scaffold1188 GLEAN promoter 618827 619826 1 + . ID=CGI_10025491; scaffold1188 GLEAN mRNA 619827 624862 1 + . ID=CGI_10025491; scaffold1188 GLEAN promoter 621968 622967 0.634377 - . ID=CGI_10025490; scaffold1188 TRF Tandem_Repeat 623517 623558 84 + . . scaffold1188 GLEAN promoter 628715 629714 0.590149 + . ID=CGI_10025492; scaffold1188 GLEAN mRNA 629715 632504 0.590149 + . ID=CGI_10025492; scaffold1188 WUBlastX LTR_Gypsy 644792 645238 121 - . . scaffold1188 WUBlastX LTR_Gypsy 644870 645238 261 - . . scaffold1188 WUBlastX LTR_Gypsy 644870 645400 251 - . . scaffold1188 WUBlastX LTR_Gypsy 645203 645538 35 - . . scaffold1188 WUBlastX LTR_Gypsy 645497 645601 35 - . . scaffold1188 WUBlastX LTR_Gypsy 645587 645802 33 - . . scaffold1188 WUBlastX LTR_Gypsy 645686 645841 37 - . . scaffold1188 WUBlastX LTR_Gypsy 645935 646030 30 - . . scaffold1188 WUBlastX LTR_Gypsy 645977 646279 39 - . . scaffold1188 WUBlastX LTR_Gypsy 646031 646528 30 - . . scaffold1188 WUBlastX LTR_Gypsy 646364 646753 40 - . . scaffold1188 WUBlastX LTR_Gypsy 646695 647144 168 - . . scaffold1188 WUBlastX LTR_Gypsy 646728 647390 162 - . . scaffold1188 GLEAN mRNA 648038 660238 0.573951 - . ID=CGI_10025493; scaffold1188 WUBlastX LINE_L2 656507 656950 50 - . . scaffold1188 WUBlastX LINE_CR1-L2 656893 657156 92 - . . scaffold1188 WUBlastX LINE_CR1-L2 657098 657391 22 - . . scaffold1188 WUBlastX LINE_CR1-L2 657104 657283 66 - . . scaffold1188 WUBlastX LINE_CR1-L2 657104 657253 78 - . . scaffold1188 GLEAN promoter 660239 661238 0.573951 - . ID=CGI_10025493; scaffold1188 WUBlastX LINE_Penelope 661582 662385 142 - . . scaffold1188 WUBlastX LINE_Penelope 662423 662752 172 - . . scaffold1188 GLEAN mRNA 670283 671185 0.446268 - . ID=CGI_10025494; scaffold1188 GLEAN promoter 670645 671644 0.649414 + . ID=CGI_10025495; scaffold1188 GLEAN promoter 671186 672185 0.446268 - . ID=CGI_10025494; scaffold1188 GLEAN mRNA 671645 677078 0.649414 + . ID=CGI_10025495; scaffold1188 TRF Tandem_Repeat 673231 673301 142 + . . scaffold1188 TRF Tandem_Repeat 676429 676456 56 + . . scaffold1188 GLEAN promoter 677504 678503 0.887715 + . ID=CGI_10025496; scaffold1188 GLEAN mRNA 678504 691799 0.887715 + . ID=CGI_10025496; scaffold1188 TRF Tandem_Repeat 682211 682236 52 + . . scaffold1188 GLEAN mRNA 692481 696111 0.993906 - . ID=CGI_10025497; scaffold1188 TRF Tandem_Repeat 693052 693836 1196 + . . scaffold1188 TRF Tandem_Repeat 695198 695236 78 + . . scaffold1188 GLEAN promoter 696112 697111 0.993906 - . ID=CGI_10025497; scaffold1188 GLEAN mRNA 697525 698394 1 - . ID=CGI_10025498; scaffold1188 GLEAN promoter 698395 699394 1 - . ID=CGI_10025498; scaffold1188 WUBlastX LTR_Gypsy 707080 708645 398 + . . scaffold1188 WUBlastX LTR_Gypsy 707329 708615 1066 + . . scaffold1188 WUBlastX LTR_Gypsy 708651 709922 969 + . . scaffold1188 WUBlastX LTR_Gypsy 709080 710093 55 + . . scaffold1188 GLEAN promoter 711018 712017 0.544624 + . ID=CGI_10025499; scaffold1188 GLEAN mRNA 712018 725901 0.544624 + . ID=CGI_10025499; scaffold1188 WUBlastX LINE_RTE-X 722637 722867 33 - . . scaffold1188 TRF Tandem_Repeat 726362 726487 207 + . . scaffold1188 TRF Tandem_Repeat 737195 737695 560 + . . scaffold1188 TRF Tandem_Repeat 737280 737695 625 + . . scaffold1188 TRF Tandem_Repeat 737388 737695 351 + . . scaffold1188 WUBlastX LINE_RTE-BovB 754288 754920 283 - . . scaffold1188 WUBlastX LINE_RTE-BovB 754967 755230 68 - . . scaffold1188 WUBlastX LINE_RTE-BovB 754967 755134 84 - . . scaffold1188 WUBlastX DNA_TcMar-Tc1 755847 756353 320 - . . scaffold1188 WUBlastX DNA_TcMar-Tc1 755847 756464 157 - . . scaffold1188 WUBlastX DNA_TcMar-Tc1 756966 757058 20 - . . scaffold1188 GLEAN mRNA 759024 759324 1 - . ID=CGI_10025500; scaffold1188 GLEAN promoter 759325 760324 1 - . ID=CGI_10025500; scaffold1188 GLEAN promoter 770985 771984 1 + . ID=CGI_10025501; scaffold1188 GLEAN mRNA 771985 775377 1 + . ID=CGI_10025501; scaffold1188 GLEAN promoter 786973 787972 0.991964 + . ID=CGI_10025502; scaffold1188 TRF Tandem_Repeat 787383 787430 60 + . . scaffold1188 GLEAN mRNA 787973 796993 0.991964 + . ID=CGI_10025502; scaffold1188 WUBlastX LINE_L1-Tx1 790953 791144 25 - . . scaffold1188 WUBlastX LINE_L1-Tx1 791148 791237 31 - . . scaffold1188 WUBlastX LINE_L1 791254 791499 90 - . . scaffold1188 WUBlastX LINE_L1 791480 791701 109 - . . scaffold1188 TRF Tandem_Repeat 793920 793967 60 + . . scaffold1188 WUBlastX LINE_L1-Tx1 799923 800648 169 - . . scaffold1188 WUBlastX LINE_L1-Tx1 800689 801549 378 - . . scaffold1188 WUBlastX LINE_L1 801555 801845 51 - . . scaffold1188 WUBlastX LINE_L1-Tx1 801555 801788 90 - . . scaffold1188 WUBlastX LINE_RTE-BovB 806014 806262 48 - . . scaffold1188 GLEAN promoter 806421 807420 0.603928 + . ID=CGI_10025503; scaffold1188 GLEAN mRNA 807421 808822 0.603928 + . ID=CGI_10025503; scaffold1188 TRF Tandem_Repeat 811138 811225 88 + . . scaffold1188 TRF Tandem_Repeat 811295 811388 82 + . . scaffold1188 GLEAN promoter 813781 814780 0.686167 + . ID=CGI_10025504; scaffold1188 GLEAN mRNA 814781 816581 0.686167 + . ID=CGI_10025504; scaffold1188 GLEAN promoter 816112 817111 1 + . ID=CGI_10025505; scaffold1188 GLEAN mRNA 817112 821684 1 + . ID=CGI_10025505; scaffold1188 GLEAN promoter 821729 822728 0.999676 + . ID=CGI_10025506; scaffold1188 GLEAN mRNA 822729 828693 0.999676 + . ID=CGI_10025506; scaffold1188 GLEAN mRNA 830123 832601 1 - . ID=CGI_10025507; scaffold1188 GLEAN promoter 832602 833601 1 - . ID=CGI_10025507; scaffold1188 GLEAN mRNA 833244 845145 0.543739 - . ID=CGI_10025508; scaffold1188 TRF Tandem_Repeat 834971 835004 68 + . . scaffold1188 GLEAN promoter 845146 846145 0.543739 - . ID=CGI_10025508; scaffold1188 TRF Tandem_Repeat 856217 856322 98 + . . scaffold1188 TRF Tandem_Repeat 856232 856325 99 + . . scaffold1188 WUBlastX LINE_RTE-X 868400 868651 39 - . . scaffold1188 WUBlastX LINE_RTE-X 868493 868648 48 - . . scaffold1188 WUBlastX LINE_RTE-X 868505 868798 35 - . . scaffold1188 WUBlastX LINE_RTE-X 868523 868657 49 - . . scaffold1188 GLEAN promoter 873929 874928 0.998816 + . ID=CGI_10025509; scaffold1188 GLEAN mRNA 874929 876134 0.998816 + . ID=CGI_10025509; scaffold1188 TRF Tandem_Repeat 883443 883502 93 + . . scaffold1188 TRF Tandem_Repeat 890850 890904 101 + . . scaffold1188 TRF Tandem_Repeat 892528 892580 106 + . . scaffold1188 WUBlastX LINE_RTE-X 896378 896773 57 + . . scaffold1188 WUBlastX LINE_RTE-X 896501 896773 103 + . . scaffold1188 WUBlastX LINE_RTE-X 896564 896812 56 + . . scaffold1188 TRF Tandem_Repeat 904075 904120 92 + . . scaffold1188 GLEAN mRNA 910578 934331 0.995664 - . ID=CGI_10025510; scaffold1188 TRF Tandem_Repeat 928436 928474 55 + . . scaffold1188 GLEAN promoter 934332 935331 0.995664 - . ID=CGI_10025510; scaffold1188 WUBlastX LINE_R2-Hero 935788 936360 166 + . . scaffold1188 WUBlastX LINE_R2-Hero 935836 936192 200 + . . scaffold1188 GLEAN promoter 937988 938987 0.593391 + . ID=CGI_10025511; scaffold1188 GLEAN mRNA 938988 941117 0.593391 + . ID=CGI_10025511; scaffold1188 GLEAN mRNA 943615 951298 1 - . ID=CGI_10025512; scaffold1188 TRF Tandem_Repeat 948403 948429 54 + . . scaffold1188 TRF Tandem_Repeat 948717 948808 87 + . . scaffold1188 TRF Tandem_Repeat 948895 949022 91 + . . scaffold1188 TRF Tandem_Repeat 949249 949342 127 + . . scaffold1188 GLEAN promoter 951299 952298 1 - . ID=CGI_10025512; scaffold1188 TRF Tandem_Repeat 953647 953686 80 + . . scaffold1188 TRF Tandem_Repeat 958132 958175 88 + . . scaffold1188 TRF Tandem_Repeat 969868 969902 70 + . . scaffold1188 GLEAN mRNA 981208 986556 0.353141 - . ID=CGI_10025513; scaffold1188 GLEAN promoter 986557 987556 0.353141 - . ID=CGI_10025513; scaffold1188 TRF Tandem_Repeat 987425 987476 104 + . . scaffold1188 TRF Tandem_Repeat 988872 989611 1001 + . . scaffold1188 GLEAN promoter 1009106 1010105 0.987754 + . ID=CGI_10025514; scaffold1188 GLEAN mRNA 1010106 1017126 0.987754 + . ID=CGI_10025514; scaffold1188 TRF Tandem_Repeat 1024901 1025013 65 + . . scaffold1188 TRF Tandem_Repeat 1028124 1029827 2053 + . . scaffold1188 WUBlastX LINE_CR1-L2 1046612 1046809 42 - . . scaffold1188 WUBlastX LINE_CR1-L2 1046788 1047399 204 - . . scaffold1188 TRF Tandem_Repeat 1049023 1049050 56 + . . scaffold1188 GLEAN promoter 1054687 1055686 0.987711 + . ID=CGI_10025515; scaffold1188 GLEAN mRNA 1055687 1059010 0.987711 + . ID=CGI_10025515; scaffold1188 WUBlastX LINE_RTE-X 1061674 1061832 73 - . . scaffold1188 WUBlastX LINE_RTE-X 1061698 1061820 86 - . . scaffold1188 TRF Tandem_Repeat 1067511 1067563 106 + . . scaffold1188 TRF Tandem_Repeat 1067564 1067594 62 + . . scaffold1188 WUBlastX LINE_RTE-X 1070094 1070264 43 - . . scaffold1188 TRF Tandem_Repeat 1070636 1070681 92 + . . scaffold1188 TRF Tandem_Repeat 1074523 1074551 58 + . . scaffold1189 TRF Tandem_Repeat 145 831 735 + . . scaffold1189 TRF Tandem_Repeat 145 831 735 + . . scaffold1189 TRF Tandem_Repeat 178 831 625 + . . scaffold1189 GLEAN promoter 2236 3235 0.999995 + . ID=CGI_10023791; scaffold1189 GLEAN mRNA 3236 11571 0.999995 + . ID=CGI_10023791; scaffold1189 TRF Tandem_Repeat 12583 12629 76 + . . scaffold1189 TRF Tandem_Repeat 12587 12636 82 + . . scaffold1189 TRF Tandem_Repeat 12640 13497 1156 + . . scaffold1189 GLEAN mRNA 19378 23047 1 - . ID=CGI_10023792; scaffold1189 GLEAN promoter 23048 24047 1 - . ID=CGI_10023792; scaffold1189 TRF Tandem_Repeat 23795 23834 62 + . . scaffold1189 TRF Tandem_Repeat 24042 24099 116 + . . scaffold1189 GLEAN promoter 27380 28379 1 + . ID=CGI_10023793; scaffold1189 GLEAN mRNA 28380 51228 1 + . ID=CGI_10023793; scaffold1189 WUBlastX DNA_Zator 37489 37869 52 - . . scaffold1189 TRF Tandem_Repeat 42958 42988 53 + . . scaffold1189 GLEAN mRNA 53841 56755 1 - . ID=CGI_10023794; scaffold1189 GLEAN promoter 56756 57755 1 - . ID=CGI_10023794; scaffold1189 TRF Tandem_Repeat 58157 58285 84 + . . scaffold1189 GLEAN mRNA 59477 65052 0.999676 - . ID=CGI_10023795; scaffold1189 GLEAN promoter 65053 66052 0.999676 - . ID=CGI_10023795; scaffold1189 GLEAN promoter 65889 66888 0.98795 + . ID=CGI_10023796; scaffold1189 GLEAN mRNA 66889 80050 0.98795 + . ID=CGI_10023796; scaffold1189 TRF Tandem_Repeat 71391 71445 110 + . . scaffold1189 GLEAN promoter 80341 81340 0.992051 + . ID=CGI_10023797; scaffold1189 GLEAN mRNA 81341 82291 0.992051 + . ID=CGI_10023797; scaffold1189 TRF Tandem_Repeat 83112 83884 997 + . . scaffold1189 TRF Tandem_Repeat 86507 86561 74 + . . scaffold1189 GLEAN mRNA 87809 111907 0.673803 - . ID=CGI_10023798; scaffold1189 GLEAN promoter 95078 96077 1 + . ID=CGI_10023799; scaffold1189 GLEAN mRNA 96078 105743 1 + . ID=CGI_10023799; scaffold1189 TRF Tandem_Repeat 109884 109922 60 + . . scaffold1189 GLEAN promoter 111908 112907 0.673803 - . ID=CGI_10023798; scaffold1189 WUBlastX LINE_Penelope 114055 114579 23 + . . scaffold1189 WUBlastX LINE_Penelope 114226 114624 25 + . . scaffold1189 WUBlastX LTR_Ngaro 115419 115673 85 + . . scaffold1189 WUBlastX LTR_Ngaro 115527 115682 102 + . . scaffold1189 WUBlastX LTR_Ngaro 115813 116565 253 + . . scaffold1189 TRF Tandem_Repeat 122794 122824 53 + . . scaffold1189 WUBlastX LINE_CR1-L2 126715 126873 45 + . . scaffold1189 TRF Tandem_Repeat 132240 132303 110 + . . scaffold1189 WUBlastX LINE_L2 134588 135058 116 - . . scaffold1189 GLEAN promoter 134660 135659 1 + . ID=CGI_10023800; scaffold1189 WUBlastX LINE_L2 134839 134955 116 - . . scaffold1189 GLEAN mRNA 135660 152717 1 + . ID=CGI_10023800; scaffold1189 TRF Tandem_Repeat 140522 140573 104 + . . scaffold1189 WUBlastX LINE_L1-Tx1 141221 141424 38 - . . scaffold1189 GLEAN promoter 152154 153153 1 + . ID=CGI_10023801; scaffold1189 GLEAN mRNA 153154 155406 1 + . ID=CGI_10023801; scaffold1189 TRF Tandem_Repeat 154047 154097 102 + . . scaffold1189 TRF Tandem_Repeat 154936 154989 65 + . . scaffold1189 GLEAN promoter 155411 156410 0.999922 + . ID=CGI_10023802; scaffold1189 GLEAN mRNA 156411 172569 0.999922 + . ID=CGI_10023802; scaffold1189 TRF Tandem_Repeat 157242 157282 82 + . . scaffold1189 WUBlastX LTR_DIRS 199541 200509 455 + . . scaffold1189 WUBlastX LTR_DIRS 200491 201213 238 + . . scaffold1189 WUBlastX LTR_DIRS 201108 202025 284 + . . scaffold1189 GLEAN promoter 203801 204800 1 + . ID=CGI_10023803; scaffold1189 GLEAN mRNA 204801 206475 1 + . ID=CGI_10023803; scaffold1189 WUBlastX LINE_L1-Tx1 211068 212969 621 - . . scaffold1189 WUBlastX LINE_L2 212529 213188 53 - . . scaffold1189 WUBlastX LINE_RTE-BovB 213505 213678 26 + . . scaffold1189 WUBlastX LINE_L2 213591 214076 114 + . . scaffold1189 WUBlastX LINE_L2 213681 214076 190 + . . scaffold1189 WUBlastX LINE_L2 214066 214308 161 + . . scaffold1189 WUBlastX LINE_L2 214319 214870 173 + . . scaffold1189 WUBlastX LINE_L2 214319 215032 75 + . . scaffold1189 WUBlastX LINE_L2 214872 215120 21 + . . scaffold1189 GLEAN promoter 216535 217534 1 + . ID=CGI_10023804; scaffold1189 GLEAN mRNA 217535 219316 1 + . ID=CGI_10023804; scaffold1189 TRF Tandem_Repeat 222208 222336 206 + . . scaffold1189 GLEAN mRNA 223403 232698 0.889914 - . ID=CGI_10023805; scaffold1189 TRF Tandem_Repeat 225836 226265 554 + . . scaffold1189 GLEAN promoter 232699 233698 0.889914 - . ID=CGI_10023805; scaffold1189 WUBlastX LINE_L2 233314 233886 96 - . . scaffold1189 WUBlastX LINE_CR1-L2 233633 234163 181 - . . scaffold1189 WUBlastX LINE_RTE-X 234359 234550 26 + . . scaffold1189 WUBlastX LINE_RTE-BovB 234389 234598 43 + . . scaffold1189 WUBlastX LINE_RTE-BovB 234473 234646 24 + . . scaffold1189 WUBlastX LINE_Jockey 234777 234995 27 + . . scaffold1189 WUBlastX LINE_CR1 234837 234974 52 + . . scaffold1189 WUBlastX LINE_RTE-BovB 234873 235031 51 + . . scaffold1189 WUBlastX LINE_RTE-X 235135 235251 27 + . . scaffold1189 WUBlastX LINE_RTE-X 235675 235854 59 + . . scaffold1189 WUBlastX LINE_RTE-X 235841 235987 49 + . . scaffold1189 WUBlastX LINE_RTE-X 236010 236096 63 + . . scaffold1189 WUBlastX LINE_RTE-X 236010 236147 25 + . . scaffold1189 TRF Tandem_Repeat 236989 237052 119 + . . scaffold1189 WUBlastX LINE_RTE-X 238309 238488 47 + . . scaffold1189 WUBlastX LINE_RTE-X 238440 238592 28 + . . scaffold1189 WUBlastX LINE_RTE-X 238440 238634 24 + . . scaffold1189 TRF Tandem_Repeat 238921 238968 96 + . . scaffold1189 TRF Tandem_Repeat 239183 239465 325 + . . scaffold1189 TRF Tandem_Repeat 239188 239473 380 + . . scaffold1189 TRF Tandem_Repeat 239491 239536 92 + . . scaffold1189 TRF Tandem_Repeat 241329 241380 104 + . . scaffold1189 TRF Tandem_Repeat 241398 241950 660 + . . scaffold1189 TRF Tandem_Repeat 241406 241933 764 + . . scaffold1189 TRF Tandem_Repeat 241406 241932 658 + . . scaffold1189 TRF Tandem_Repeat 244874 245175 205 + . . scaffold1189 TRF Tandem_Repeat 244876 245062 175 + . . scaffold1189 TRF Tandem_Repeat 244876 245210 194 + . . scaffold1189 TRF Tandem_Repeat 245879 246030 171 + . . scaffold1189 TRF Tandem_Repeat 245879 246263 124 + . . scaffold1189 TRF Tandem_Repeat 245880 246194 136 + . . scaffold1189 TRF Tandem_Repeat 246010 246194 128 + . . scaffold1189 GLEAN promoter 246794 247793 0.97837 + . ID=CGI_10023806; scaffold1189 TRF Tandem_Repeat 247353 247402 73 + . . scaffold1189 TRF Tandem_Repeat 247400 247456 114 + . . scaffold1189 GLEAN mRNA 247794 257723 0.97837 + . ID=CGI_10023806; scaffold1189 TRF Tandem_Repeat 248328 248365 76 + . . scaffold1189 TRF Tandem_Repeat 248590 248621 57 + . . scaffold1189 TRF Tandem_Repeat 250752 250791 80 + . . scaffold1189 TRF Tandem_Repeat 259858 259944 174 + . . scaffold1189 GLEAN mRNA 261894 262265 1 - . ID=CGI_10023807; scaffold1189 GLEAN promoter 262266 263265 1 - . ID=CGI_10023807; scaffold1189 TRF Tandem_Repeat 269338 269374 74 + . . scaffold1189 TRF Tandem_Repeat 270223 270263 82 + . . scaffold1189 TRF Tandem_Repeat 272447 272493 58 + . . scaffold1189 WUBlastX LINE_RTE-X 275776 275841 22 - . . scaffold1189 WUBlastX LINE_RTE-X 275859 276020 62 - . . scaffold1189 WUBlastX LINE_RTE-X 275862 276068 47 - . . scaffold1189 WUBlastX LINE_RTE-X 277587 277649 29 - . . scaffold1189 WUBlastX LINE_RTE-X 277648 277815 33 - . . scaffold1189 WUBlastX LTR_Gypsy-Cigr 279542 280153 160 + . . scaffold1189 WUBlastX LTR_Gypsy-Cigr 279671 280399 209 + . . scaffold1189 WUBlastX LTR_Gypsy 280343 280768 89 + . . scaffold1189 WUBlastX LTR_Gypsy-Cigr 280520 282820 1337 + . . scaffold1189 WUBlastX LTR_Gypsy 282704 282862 45 + . . scaffold1189 TRF Tandem_Repeat 287042 287141 182 + . . scaffold1189 WUBlastX LINE_R2-Hero 287655 288200 133 - . . scaffold1189 GLEAN promoter 287710 288709 0.981511 + . ID=CGI_10023808; scaffold1189 GLEAN mRNA 288710 324812 0.981511 + . ID=CGI_10023808; scaffold1189 TRF Tandem_Repeat 288882 288920 78 + . . scaffold1189 TRF Tandem_Repeat 304602 304636 70 + . . scaffold1189 TRF Tandem_Repeat 314494 314531 76 + . . scaffold1189 TRF Tandem_Repeat 316774 316842 50 + . . scaffold1189 TRF Tandem_Repeat 316774 316836 58 + . . scaffold1189 TRF Tandem_Repeat 316774 316836 54 + . . scaffold1189 GLEAN mRNA 326904 335613 1 - . ID=CGI_10023809; scaffold1189 TRF Tandem_Repeat 330119 331782 1875 + . . scaffold1189 TRF Tandem_Repeat 330187 331755 1803 + . . scaffold1189 TRF Tandem_Repeat 330618 331742 990 + . . scaffold1189 GLEAN promoter 335614 336613 1 - . ID=CGI_10023809; scaffold1189 TRF Tandem_Repeat 339005 339058 108 + . . scaffold1189 GLEAN mRNA 347207 348791 0.69566 - . ID=CGI_10023810; scaffold1189 GLEAN promoter 348792 349791 0.69566 - . ID=CGI_10023810; scaffold1189 TRF Tandem_Repeat 352061 352127 71 + . . scaffold1189 WUBlastX DNA_TcMar-Marin 357796 358182 103 - . . scaffold1189 WUBlastX DNA_TcMar-Marin 357961 358236 52 - . . scaffold1189 WUBlastX DNA_TcMar-Marin 358233 358787 69 - . . scaffold1189 WUBlastX DNA_TcMar-Marin 358742 358813 25 - . . scaffold1189 TRF Tandem_Repeat 363689 363734 92 + . . scaffold1189 TRF Tandem_Repeat 369343 369485 202 + . . scaffold1189 GLEAN promoter 370964 371963 0.987913 + . ID=CGI_10023811; scaffold1189 GLEAN mRNA 371964 376577 0.987913 + . ID=CGI_10023811; scaffold1189 TRF Tandem_Repeat 386282 386312 62 + . . scaffold1189 TRF Tandem_Repeat 391526 391566 82 + . . scaffold1189 TRF Tandem_Repeat 395426 395468 86 + . . scaffold1189 GLEAN promoter 397783 398782 1 + . ID=CGI_10023812; scaffold1189 GLEAN mRNA 398783 405232 1 + . ID=CGI_10023812; scaffold1189 TRF Tandem_Repeat 403277 403307 62 + . . scaffold1189 TRF Tandem_Repeat 403305 403348 88 + . . scaffold1189 GLEAN promoter 404628 405627 0.920284 + . ID=CGI_10023813; scaffold1189 GLEAN mRNA 405628 418580 0.920284 + . ID=CGI_10023813; scaffold1189 TRF Tandem_Repeat 410774 410893 135 + . . scaffold1189 TRF Tandem_Repeat 411495 411795 334 + . . scaffold1189 TRF Tandem_Repeat 411495 411758 384 + . . scaffold1189 TRF Tandem_Repeat 413226 413317 112 + . . scaffold1189 TRF Tandem_Repeat 413228 413317 126 + . . scaffold1189 GLEAN promoter 419998 420997 0.242551 + . ID=CGI_10023814; scaffold1189 GLEAN mRNA 420998 428061 0.242551 + . ID=CGI_10023814; scaffold1189 TRF Tandem_Repeat 424245 424364 199 + . . scaffold1189 GLEAN promoter 451713 452712 0.881264 + . ID=CGI_10023815; scaffold1189 GLEAN mRNA 452713 458071 0.881264 + . ID=CGI_10023815; scaffold1189 TRF Tandem_Repeat 459034 459085 68 + . . scaffold1189 WUBlastX LTR_Gypsy 469884 470723 26 - . . scaffold1189 WUBlastX LTR_Gypsy 470184 470756 66 - . . scaffold1189 TRF Tandem_Repeat 480081 480134 74 + . . scaffold1189 WUBlastX LINE_CR1 484796 485872 469 + . . scaffold1189 TRF Tandem_Repeat 486014 486063 75 + . . scaffold1189 WUBlastX LINE_CR1 488807 489436 120 + . . scaffold1189 WUBlastX LINE_CR1 488807 489331 388 + . . scaffold1189 TRF Tandem_Repeat 491227 491276 100 + . . scaffold1189 GLEAN promoter 492308 493307 0.999676 + . ID=CGI_10023816; scaffold1189 GLEAN mRNA 493308 498900 0.999676 + . ID=CGI_10023816; scaffold1189 TRF Tandem_Repeat 502009 502307 357 + . . scaffold1189 GLEAN promoter 503060 504059 0.989551 + . ID=CGI_10023817; scaffold1189 GLEAN mRNA 504060 504932 0.989551 + . ID=CGI_10023817; scaffold1189 TRF Tandem_Repeat 505977 506023 62 + . . scaffold1189 GLEAN promoter 508141 509140 1 + . ID=CGI_10023818; scaffold1189 GLEAN mRNA 509141 510723 1 + . ID=CGI_10023818; scaffold1189 GLEAN promoter 510423 511422 1 + . ID=CGI_10023819; scaffold1189 GLEAN mRNA 511423 512602 1 + . ID=CGI_10023819; scaffold1189 GLEAN mRNA 514327 528818 1 - . ID=CGI_10023820; scaffold1189 TRF Tandem_Repeat 519282 519364 96 + . . scaffold1189 TRF Tandem_Repeat 519288 519376 137 + . . scaffold1189 TRF Tandem_Repeat 519298 519389 75 + . . scaffold1189 TRF Tandem_Repeat 519439 519489 77 + . . scaffold1189 GLEAN promoter 528819 529818 1 - . ID=CGI_10023820; scaffold1189 WUBlastX LINE_L1-Tx1 536601 538802 859 + . . scaffold1189 GLEAN promoter 537900 538899 1 + . ID=CGI_10023821; scaffold1189 GLEAN mRNA 538900 541860 1 + . ID=CGI_10023821; scaffold1189 GLEAN mRNA 544504 556179 0.999351 - . ID=CGI_10023822; scaffold1189 GLEAN promoter 556180 557179 0.999351 - . ID=CGI_10023822; scaffold1189 TRF Tandem_Repeat 557939 557989 102 + . . scaffold1189 GLEAN promoter 567608 568607 0.997699 + . ID=CGI_10023823; scaffold1189 GLEAN mRNA 568608 577407 0.997699 + . ID=CGI_10023823; scaffold1189 TRF Tandem_Repeat 569189 569248 120 + . . scaffold1189 WUBlastX LINE_RTE-X 577114 577422 48 - . . scaffold1189 WUBlastX LINE_CR1 577183 577689 23 - . . scaffold1189 GLEAN promoter 578265 579264 0.759763 + . ID=CGI_10023824; scaffold1189 GLEAN mRNA 579265 588604 0.759763 + . ID=CGI_10023824; scaffold1189 TRF Tandem_Repeat 582621 582701 162 + . . scaffold1189 GLEAN mRNA 598890 601124 0.99428 - . ID=CGI_10023825; scaffold1189 GLEAN promoter 601125 602124 0.99428 - . ID=CGI_10023825; scaffold1189 GLEAN mRNA 602283 608165 0.959665 - . ID=CGI_10023826; scaffold1189 GLEAN promoter 608166 609165 0.959665 - . ID=CGI_10023826; scaffold1189 WUBlastX LINE_L2 611384 611809 83 - . . scaffold1189 GLEAN mRNA 621779 627714 0.886417 - . ID=CGI_10023827; scaffold1189 GLEAN promoter 627715 628714 0.886417 - . ID=CGI_10023827; scaffold1189 GLEAN mRNA 632624 639695 1 - . ID=CGI_10023828; scaffold1189 WUBlastX LINE_L1-Tx1 633958 634836 129 - . . scaffold1189 WUBlastX LINE_L1 634809 635063 53 - . . scaffold1189 WUBlastX LINE_L1-Tx1 634946 635554 344 - . . scaffold1189 WUBlastX LINE_L1-Tx1 635437 635676 131 - . . scaffold1189 WUBlastX LINE_L1 635440 635721 56 - . . scaffold1189 WUBlastX LINE_L1 636263 636313 21 - . . scaffold1189 WUBlastX LINE_L1-Tx1 636354 636728 64 - . . scaffold1189 GLEAN promoter 639696 640695 1 - . ID=CGI_10023828; scaffold1189 WUBlastX DNA_Harbinger 644284 644466 56 + . . scaffold1189 TRF Tandem_Repeat 650668 650715 96 + . . scaffold1189 TRF Tandem_Repeat 655981 656038 116 + . . scaffold1189 WUBlastX LINE_RTE-BovB 656130 656429 48 + . . scaffold1189 WUBlastX LINE_RTE-BovB 656325 656423 54 + . . scaffold1189 WUBlastX LINE_RTE-X 656381 657817 717 + . . scaffold1189 WUBlastX LINE_RTE-X 657816 658313 100 + . . scaffold1189 WUBlastX LINE_RTE-X 657852 658178 105 + . . scaffold1189 TRF Tandem_Repeat 663153 665163 2612 + . . scaffold1189 TRF Tandem_Repeat 665298 666753 1983 + . . scaffold1189 TRF Tandem_Repeat 665298 666379 1616 + . . scaffold1189 TRF Tandem_Repeat 673762 674014 416 + . . scaffold1189 TRF Tandem_Repeat 674221 674263 86 + . . scaffold1189 TRF Tandem_Repeat 678660 678687 56 + . . scaffold1189 TRF Tandem_Repeat 681968 682011 88 + . . scaffold1189 TRF Tandem_Repeat 683245 683331 156 + . . scaffold1189 GLEAN promoter 687888 688887 0.718514 + . ID=CGI_10023829; scaffold1189 GLEAN mRNA 688888 690353 0.718514 + . ID=CGI_10023829; scaffold1189 TRF Tandem_Repeat 690002 690061 120 + . . scaffold1189 TRF Tandem_Repeat 691466 691491 52 + . . scaffold1189 TRF Tandem_Repeat 695009 695811 1246 + . . scaffold1189 TRF Tandem_Repeat 710530 710747 202 + . . scaffold1189 WUBlastX LINE_L1 711247 711747 23 - . . scaffold1189 WUBlastX LINE_L1-Tx1 711379 711735 42 - . . scaffold1189 WUBlastX LINE_L1-Tx1 711517 711822 21 - . . scaffold1189 WUBlastX LINE_L1-Tx1 712020 712163 30 - . . scaffold1189 TRF Tandem_Repeat 720920 722430 2241 + . . scaffold1189 GLEAN mRNA 727955 748794 0.99736 - . ID=CGI_10023830; scaffold1189 TRF Tandem_Repeat 742686 742726 82 + . . scaffold1189 TRF Tandem_Repeat 746367 746438 137 + . . scaffold1189 TRF Tandem_Repeat 748011 748039 58 + . . scaffold1189 GLEAN promoter 748795 749794 0.99736 - . ID=CGI_10023830; scaffold1189 TRF Tandem_Repeat 749921 750038 84 + . . scaffold1189 TRF Tandem_Repeat 749924 750044 72 + . . scaffold1189 GLEAN promoter 755073 756072 1 + . ID=CGI_10023831; scaffold1189 GLEAN mRNA 756073 761935 1 + . ID=CGI_10023831; scaffold1189 TRF Tandem_Repeat 760301 760353 54 + . . scaffold1189 GLEAN promoter 762568 763567 0.392072 + . ID=CGI_10023832; scaffold1189 GLEAN mRNA 763568 774596 0.392072 + . ID=CGI_10023832; scaffold1189 WUBlastX LINE_RTE-X 773366 773863 103 - . . scaffold1189 WUBlastX LINE_RTE-X 773453 773947 69 - . . scaffold1189 GLEAN promoter 773640 774639 0.809091 + . ID=CGI_10023833; scaffold1189 WUBlastX LINE_RTE-X 774029 774130 46 - . . scaffold1189 WUBlastX LINE_RTE-X 774029 774160 27 - . . scaffold1189 WUBlastX LINE_RTE-X 774153 774281 38 - . . scaffold1189 GLEAN mRNA 774640 782048 0.809091 + . ID=CGI_10023833; scaffold1189 TRF Tandem_Repeat 780785 780817 66 + . . scaffold1189 GLEAN mRNA 782344 785273 0.260583 - . ID=CGI_10023834; scaffold1189 GLEAN promoter 785274 786273 0.260583 - . ID=CGI_10023834; scaffold1189 TRF Tandem_Repeat 790437 790486 64 + . . scaffold1189 TRF Tandem_Repeat 790444 790493 68 + . . scaffold1189 GLEAN promoter 795543 796542 1 + . ID=CGI_10023835; scaffold1189 GLEAN mRNA 796543 797568 1 + . ID=CGI_10023835; scaffold1189 TRF Tandem_Repeat 797137 797336 204 + . . scaffold1189 TRF Tandem_Repeat 799596 799720 92 + . . scaffold1189 GLEAN promoter 800368 801367 0.737324 + . ID=CGI_10023836; scaffold1189 GLEAN mRNA 801368 838042 0.737324 + . ID=CGI_10023836; scaffold1189 TRF Tandem_Repeat 806741 806864 88 + . . scaffold1189 TRF Tandem_Repeat 806741 806842 62 + . . scaffold1189 TRF Tandem_Repeat 806836 807000 99 + . . scaffold1189 TRF Tandem_Repeat 806965 807053 124 + . . scaffold1189 TRF Tandem_Repeat 818996 819222 325 + . . scaffold1189 TRF Tandem_Repeat 819138 819218 72 + . . scaffold1189 TRF Tandem_Repeat 823622 823652 62 + . . scaffold1189 TRF Tandem_Repeat 836049 836182 205 + . . scaffold1189 TRF Tandem_Repeat 837482 837597 142 + . . scaffold1189 TRF Tandem_Repeat 837773 837870 117 + . . scaffold1189 TRF Tandem_Repeat 841709 841905 148 + . . scaffold1189 TRF Tandem_Repeat 841816 841905 94 + . . scaffold1189 GLEAN promoter 844721 845720 0.805708 + . ID=CGI_10023837; scaffold1189 GLEAN mRNA 845721 854724 0.805708 + . ID=CGI_10023837; scaffold1189 WUBlastX LINE_CR1-L2 847758 848105 64 - . . scaffold1189 WUBlastX LINE_CR1-L2 847815 848105 78 - . . scaffold1189 WUBlastX LINE_CR1-L2 847842 848069 93 - . . scaffold1189 WUBlastX LINE_CR1-L2 848087 848128 42 - . . scaffold119 GLEAN mRNA 1396 11875 0.999949 - . ID=CGI_10001269; scaffold119 GLEAN promoter 11876 12875 0.999949 - . ID=CGI_10001269; scaffold1191 TRF Tandem_Repeat 6252 6306 67 + . . scaffold1191 TRF Tandem_Repeat 6255 6301 67 + . . scaffold1191 GLEAN promoter 8240 9239 1 + . ID=CGI_10005210; scaffold1191 GLEAN mRNA 9240 10181 1 + . ID=CGI_10005210; scaffold1191 TRF Tandem_Repeat 16833 16866 68 + . . scaffold1191 WUBlastX LINE_RTE-X 19705 20397 101 - . . scaffold1191 WUBlastX LINE_RTE-X 19909 20397 247 - . . scaffold1191 TRF Tandem_Repeat 23718 23764 94 + . . scaffold1191 WUBlastX LINE_L2 29843 31153 600 - . . scaffold1191 WUBlastX LINE_L2 31100 31198 22 - . . scaffold1191 GLEAN mRNA 65394 88286 0.517666 - . ID=CGI_10005211; scaffold1191 WUBlastX DNA_NOF 73854 74585 85 - . . scaffold1191 WUBlastX DNA_NOF 74823 75002 48 - . . scaffold1191 WUBlastX DNA_NOF 76952 77119 101 - . . scaffold1191 WUBlastX DNA_MuDR 77269 77529 91 - . . scaffold1191 WUBlastX DNA_NOF 77314 77529 96 - . . scaffold1191 WUBlastX DNA_NOF 77532 77597 51 - . . scaffold1191 WUBlastX DNA_NOF 78155 78322 59 - . . scaffold1191 TRF Tandem_Repeat 79045 79567 775 + . . scaffold1191 WUBlastX LTR_DIRS 84999 85310 238 - . . scaffold1191 WUBlastX LTR_DIRS? 85005 85382 132 - . . scaffold1191 TRF Tandem_Repeat 86896 86929 52 + . . scaffold1191 GLEAN promoter 87841 88840 0.89115 + . ID=CGI_10005212; scaffold1191 GLEAN promoter 88287 89286 0.517666 - . ID=CGI_10005211; scaffold1191 GLEAN mRNA 88841 97999 0.89115 + . ID=CGI_10005212; scaffold1191 TRF Tandem_Repeat 89813 89860 96 + . . scaffold1191 WUBlastX LINE_RTE-X 93695 93928 83 + . . scaffold1191 WUBlastX LINE_RTE-X 93749 93898 98 + . . scaffold1191 TRF Tandem_Repeat 94634 94677 81 + . . scaffold1191 TRF Tandem_Repeat 96333 96360 56 + . . scaffold1191 GLEAN promoter 98460 99459 0.572755 + . ID=CGI_10005213; scaffold1191 GLEAN mRNA 99460 100074 0.572755 + . ID=CGI_10005213; scaffold1191 TRF Tandem_Repeat 101225 101254 51 + . . scaffold1191 GLEAN mRNA 103097 120475 0.999949 - . ID=CGI_10005214; scaffold1191 GLEAN promoter 120476 121475 0.999949 - . ID=CGI_10005214; scaffold1194 WUBlastX LINE_L1-Tx1 1 3012 1148 - . . scaffold1194 GLEAN mRNA 3134 3478 0.999661 - . ID=CGI_10001327; scaffold1194 WUBlastX LINE_I 3293 3886 23 - . . scaffold1194 WUBlastX LINE_R1 3386 3466 23 - . . scaffold1194 GLEAN promoter 3479 4478 0.999661 - . ID=CGI_10001327; scaffold1194 WUBlastX LINE_L1 3554 3883 28 - . . scaffold1194 WUBlastX LINE_CR1 3710 4483 190 - . . scaffold1194 TRF Tandem_Repeat 10047 10145 99 + . . scaffold1195 TRF Tandem_Repeat 2710 2750 73 + . . scaffold1195 TRF Tandem_Repeat 2987 3102 173 + . . scaffold1195 TRF Tandem_Repeat 2987 3110 119 + . . scaffold1195 GLEAN mRNA 19756 24203 1 - . ID=CGI_10012091; scaffold1195 TRF Tandem_Repeat 23869 23902 68 + . . scaffold1195 TRF Tandem_Repeat 23943 23988 92 + . . scaffold1195 GLEAN promoter 24204 25203 1 - . ID=CGI_10012091; scaffold1195 TRF Tandem_Repeat 24613 24831 388 + . . scaffold1195 GLEAN promoter 26502 27501 0.999351 + . ID=CGI_10012092; scaffold1195 GLEAN mRNA 27502 39400 0.999351 + . ID=CGI_10012092; scaffold1195 TRF Tandem_Repeat 28686 28728 68 + . . scaffold1195 TRF Tandem_Repeat 35779 35814 72 + . . scaffold1195 WUBlastX DNA_Sola 41613 41780 57 + . . scaffold1195 TRF Tandem_Repeat 42701 42730 60 + . . scaffold1195 TRF Tandem_Repeat 42895 42944 100 + . . scaffold1195 GLEAN mRNA 44741 47215 0.999996 - . ID=CGI_10012093; scaffold1195 GLEAN promoter 47216 48215 0.999996 - . ID=CGI_10012093; scaffold1195 WUBlastX LINE_RTE-X 48905 49393 133 + . . scaffold1195 GLEAN promoter 49183 50182 0.996429 + . ID=CGI_10012094; scaffold1195 WUBlastX LINE_RTE-X 49365 49559 83 + . . scaffold1195 GLEAN mRNA 50183 65282 0.996429 + . ID=CGI_10012094; scaffold1195 TRF Tandem_Repeat 54612 54661 57 + . . scaffold1195 WUBlastX DNA_Zator 59050 59223 54 + . . scaffold1195 WUBlastX DNA_Zator 59486 59539 29 + . . scaffold1195 GLEAN mRNA 66056 72406 0.593241 - . ID=CGI_10012095; scaffold1195 TRF Tandem_Repeat 71367 71448 86 + . . scaffold1195 GLEAN promoter 71745 72744 0.836486 + . ID=CGI_10012096; scaffold1195 GLEAN promoter 72407 73406 0.593241 - . ID=CGI_10012095; scaffold1195 GLEAN mRNA 72745 108116 0.836486 + . ID=CGI_10012096; scaffold1195 TRF Tandem_Repeat 76751 76882 168 + . . scaffold1195 TRF Tandem_Repeat 76751 76854 187 + . . scaffold1195 TRF Tandem_Repeat 76751 76876 96 + . . scaffold1195 TRF Tandem_Repeat 109661 109725 78 + . . scaffold1195 TRF Tandem_Repeat 114991 115034 88 + . . scaffold1195 GLEAN mRNA 119927 120157 0.618241 - . ID=CGI_10012097; scaffold1195 GLEAN promoter 120158 121157 0.618241 - . ID=CGI_10012097; scaffold1195 GLEAN promoter 125439 126438 0.840019 + . ID=CGI_10012098; scaffold1195 GLEAN mRNA 126439 143585 0.840019 + . ID=CGI_10012098; scaffold1195 TRF Tandem_Repeat 137178 137274 151 + . . scaffold1195 GLEAN mRNA 149051 158317 0.73104 - . ID=CGI_10012099; scaffold1195 GLEAN promoter 158318 159317 0.73104 - . ID=CGI_10012099; scaffold1195 TRF Tandem_Repeat 185874 185913 71 + . . scaffold1195 TRF Tandem_Repeat 186639 186720 157 + . . scaffold1195 TRF Tandem_Repeat 188400 188480 99 + . . scaffold1195 WUBlastX DNA_TcMar-Tc1 196575 197588 437 + . . scaffold1195 TRF Tandem_Repeat 204460 204524 112 + . . scaffold1195 TRF Tandem_Repeat 212544 212595 104 + . . scaffold1195 TRF Tandem_Repeat 214823 214876 90 + . . scaffold1195 TRF Tandem_Repeat 227072 227102 53 + . . scaffold1195 TRF Tandem_Repeat 228553 228606 90 + . . scaffold1195 TRF Tandem_Repeat 231432 231499 91 + . . scaffold1195 TRF Tandem_Repeat 232603 232721 95 + . . scaffold1195 TRF Tandem_Repeat 236395 236426 57 + . . scaffold1195 TRF Tandem_Repeat 244793 248771 3171 + . . scaffold1195 TRF Tandem_Repeat 244794 246395 1678 + . . scaffold1195 TRF Tandem_Repeat 246815 248771 2053 + . . scaffold1195 TRF Tandem_Repeat 248818 249486 731 + . . scaffold1195 TRF Tandem_Repeat 249507 250665 1083 + . . scaffold1195 TRF Tandem_Repeat 250712 251380 731 + . . scaffold1195 GLEAN mRNA 254315 280701 0.232392 - . ID=CGI_10012100; scaffold1195 TRF Tandem_Repeat 254802 255111 333 + . . scaffold1195 TRF Tandem_Repeat 260101 260138 58 + . . scaffold1195 GLEAN promoter 274044 275043 0.648947 + . ID=CGI_10012101; scaffold1195 GLEAN mRNA 275044 275295 0.648947 + . ID=CGI_10012101; scaffold1195 GLEAN promoter 280702 281701 0.232392 - . ID=CGI_10012100; scaffold1195 WUBlastX LINE_L1 287269 287814 261 - . . scaffold1195 WUBlastX LINE_L1-Tx1 287275 287721 408 - . . scaffold1195 WUBlastX LINE_L1-Tx1 287762 288613 214 - . . scaffold1195 WUBlastX LINE_L1-Tx1 288616 289032 211 - . . scaffold1195 GLEAN mRNA 290174 296026 0.541928 - . ID=CGI_10012102; scaffold1195 WUBlastX LINE_L2 290501 291139 46 - . . scaffold1195 WUBlastX LINE_L1 290513 290848 76 - . . scaffold1195 GLEAN promoter 296027 297026 0.541928 - . ID=CGI_10012102; scaffold1195 TRF Tandem_Repeat 296721 296756 56 + . . scaffold1195 TRF Tandem_Repeat 299616 299655 55 + . . scaffold1195 TRF Tandem_Repeat 300244 300285 84 + . . scaffold1195 TRF Tandem_Repeat 301755 301790 72 + . . scaffold1196 GLEAN mRNA 2317 3289 1 - . ID=CGI_10000272; scaffold1196 GLEAN promoter 3290 3599 1 - . ID=CGI_10000272; scaffold1197 GLEAN mRNA 7862 12133 1 - . ID=CGI_10001090; scaffold1197 GLEAN promoter 12134 13133 1 - . ID=CGI_10001090; scaffold1198 TRF Tandem_Repeat 4790 4816 54 + . . scaffold1198 GLEAN promoter 6040 7039 0.300278 + . ID=CGI_10002850; scaffold1198 GLEAN mRNA 7040 7237 0.300278 + . ID=CGI_10002850; scaffold1198 GLEAN promoter 8756 9755 0.676955 + . ID=CGI_10002851; scaffold1198 GLEAN mRNA 9756 12410 0.676955 + . ID=CGI_10002851; scaffold1198 TRF Tandem_Repeat 13560 13773 159 + . . scaffold1198 TRF Tandem_Repeat 14011 14155 91 + . . scaffold1198 WUBlastX DNA_Kolobok 20621 21301 63 + . . scaffold1198 TRF Tandem_Repeat 24794 24843 100 + . . scaffold1198 TRF Tandem_Repeat 26383 26453 135 + . . scaffold1198 TRF Tandem_Repeat 28191 28233 86 + . . scaffold1198 TRF Tandem_Repeat 32968 33001 68 + . . scaffold1198 GLEAN promoter 36848 37847 0.777719 + . ID=CGI_10002852; scaffold1198 GLEAN mRNA 37848 38705 0.777719 + . ID=CGI_10002852; scaffold1198 TRF Tandem_Repeat 55801 56597 1105 + . . scaffold1199 TRF Tandem_Repeat 384 816 495 + . . scaffold1199 TRF Tandem_Repeat 2657 2694 58 + . . scaffold1199 TRF Tandem_Repeat 13089 13277 306 + . . scaffold1199 GLEAN promoter 14720 15719 0.998466 + . ID=CGI_10005919; scaffold1199 GLEAN mRNA 15720 17757 0.998466 + . ID=CGI_10005919; scaffold1199 GLEAN promoter 24990 25989 0.590062 + . ID=CGI_10005920; scaffold1199 GLEAN mRNA 25990 26529 0.590062 + . ID=CGI_10005920; scaffold1199 WUBlastX DNA_Maverick 26610 27053 237 + . . scaffold1199 WUBlastX DNA_Maverick 27065 27370 52 + . . scaffold1199 WUBlastX DNA_Maverick 27841 27924 70 - . . scaffold1199 WUBlastX DNA_Maverick 27977 28210 108 - . . scaffold1199 WUBlastX DNA_Maverick 28231 28830 235 - . . scaffold1199 WUBlastX DNA_Maverick 29871 30107 67 - . . scaffold1199 WUBlastX DNA_Maverick 29907 30098 83 - . . scaffold1199 WUBlastX DNA_Maverick 30118 30339 72 - . . scaffold1199 WUBlastX DNA_Maverick 30118 30276 156 - . . scaffold1199 WUBlastX DNA_Maverick 30357 30554 115 - . . scaffold1199 WUBlastX DNA_Maverick 30593 30649 28 - . . scaffold1199 WUBlastX DNA_Maverick 30664 30900 76 - . . scaffold1199 WUBlastX DNA_Maverick 30727 31173 56 - . . scaffold1199 WUBlastX DNA_Maverick 31217 31855 40 - . . scaffold1199 WUBlastX DNA_Academ 34647 36356 476 - . . scaffold1199 TRF Tandem_Repeat 37814 37879 96 + . . scaffold1199 GLEAN promoter 38056 39055 0.944108 + . ID=CGI_10005921; scaffold1199 GLEAN mRNA 39056 39262 0.944108 + . ID=CGI_10005921; scaffold1199 GLEAN promoter 41625 42624 0.999343 + . ID=CGI_10005922; scaffold1199 GLEAN mRNA 42625 42831 0.999343 + . ID=CGI_10005922; scaffold1199 GLEAN mRNA 46410 49371 0.592263 - . ID=CGI_10005923; scaffold1199 WUBlastX RC_Helitron 46728 46946 48 - . . scaffold1199 WUBlastX RC_Helitron 47715 47879 35 - . . scaffold1199 WUBlastX RC_Helitron 47908 48087 29 - . . scaffold1199 WUBlastX DNA_Kolobok 48449 49108 67 - . . scaffold1199 GLEAN promoter 49372 50371 0.592263 - . ID=CGI_10005923; scaffold1199 GLEAN mRNA 51820 70502 0.636686 - . ID=CGI_10005924; scaffold1199 TRF Tandem_Repeat 52606 52663 116 + . . scaffold1199 GLEAN promoter 70503 71502 0.636686 - . ID=CGI_10005924; scaffold1199 GLEAN mRNA 99722 99967 0.604523 - . ID=CGI_10005925; scaffold1199 GLEAN promoter 99968 100967 0.604523 - . ID=CGI_10005925; scaffold1199 GLEAN mRNA 100144 100467 0.604523 - . ID=CGI_10005926; scaffold1199 GLEAN promoter 100468 101467 0.604523 - . ID=CGI_10005926; scaffold1199 WUBlastX LTR_Gypsy 101322 101465 61 + . . scaffold1199 WUBlastX LTR_Gypsy 101428 101718 98 + . . scaffold1199 WUBlastX LTR_Gypsy 101536 101751 80 + . . scaffold1199 WUBlastX DNA_En-Spm 103906 104253 122 + . . scaffold1199 GLEAN promoter 105273 106272 0.490912 + . ID=CGI_10005927; scaffold1199 GLEAN mRNA 106273 107830 0.490912 + . ID=CGI_10005927; scaffold1199 WUBlastX DNA_IS4EU 106604 107008 62 + . . scaffold1199 TRF Tandem_Repeat 107944 107974 62 + . . scaffold1199 TRF Tandem_Repeat 108853 108878 52 + . . scaffold1199 TRF Tandem_Repeat 108876 108914 78 + . . scaffold1199 TRF Tandem_Repeat 110432 110564 86 + . . scaffold1199 WUBlastX DNA_MuDR 114186 115538 354 - . . scaffold1199 TRF Tandem_Repeat 115624 115773 248 + . . scaffold1199 GLEAN mRNA 120166 128692 0.255033 - . ID=CGI_10005928; scaffold1199 TRF Tandem_Repeat 122042 122097 112 + . . scaffold1199 GLEAN promoter 127125 128124 0.593391 + . ID=CGI_10005929; scaffold1199 GLEAN mRNA 128125 128739 0.593391 + . ID=CGI_10005929; scaffold1199 GLEAN promoter 128693 129692 0.255033 - . ID=CGI_10005928; scaffold1199 GLEAN mRNA 130539 131450 0.984888 - . ID=CGI_10005930; scaffold1199 GLEAN promoter 130793 131792 0.999826 + . ID=CGI_10005931; scaffold1199 GLEAN promoter 131451 132450 0.984888 - . ID=CGI_10005930; scaffold1199 GLEAN mRNA 131793 139481 0.999826 + . ID=CGI_10005931; scaffold1199 TRF Tandem_Repeat 133279 133315 74 + . . scaffold1199 TRF Tandem_Repeat 137995 138056 124 + . . scaffold1199 GLEAN mRNA 141058 141372 0.573317 - . ID=CGI_10005932; scaffold1199 WUBlastX DNA_IS4EU 141064 141450 59 - . . scaffold1199 GLEAN promoter 141373 141452 0.573317 - . ID=CGI_10005932; scaffold12 GLEAN promoter 1 532 0.970295 + . ID=CGI_10018011; scaffold12 GLEAN mRNA 533 12832 0.970295 + . ID=CGI_10018011; scaffold12 TRF Tandem_Repeat 2561 2614 99 + . . scaffold12 WUBlastX DNA_hAT-hATw 3240 3329 27 - . . scaffold12 WUBlastX DNA_hAT-hATw 3252 3350 24 - . . scaffold12 WUBlastX DNA_hAT-hATw 3359 3571 60 - . . scaffold12 WUBlastX DNA_hAT-hATw 3634 4122 43 - . . scaffold12 WUBlastX DNA_hAT-hATw 3715 4314 39 - . . scaffold12 GLEAN mRNA 12576 13482 0.998817 - . ID=CGI_10018012; scaffold12 GLEAN promoter 13483 14482 0.998817 - . ID=CGI_10018012; scaffold12 GLEAN promoter 32418 33417 0.531565 + . ID=CGI_10018013; scaffold12 GLEAN mRNA 33418 34104 0.531565 + . ID=CGI_10018013; scaffold12 TRF Tandem_Repeat 34933 35567 262 + . . scaffold12 TRF Tandem_Repeat 35462 35580 81 + . . scaffold12 TRF Tandem_Repeat 36204 36989 992 + . . scaffold12 TRF Tandem_Repeat 48943 49187 239 + . . scaffold12 TRF Tandem_Repeat 48943 49187 334 + . . scaffold12 GLEAN promoter 50913 51912 0.999675 + . ID=CGI_10018014; scaffold12 GLEAN mRNA 51913 60624 0.999675 + . ID=CGI_10018014; scaffold12 GLEAN mRNA 60942 73024 0.463455 - . ID=CGI_10018015; scaffold12 TRF Tandem_Repeat 64078 64112 61 + . . scaffold12 GLEAN promoter 68139 69138 1 + . ID=CGI_10018016; scaffold12 GLEAN mRNA 69139 75808 1 + . ID=CGI_10018016; scaffold12 GLEAN promoter 73025 74024 0.463455 - . ID=CGI_10018015; scaffold12 GLEAN mRNA 73789 76658 1 - . ID=CGI_10018017; scaffold12 GLEAN promoter 76659 77658 1 - . ID=CGI_10018017; scaffold12 TRF Tandem_Repeat 77362 77395 59 + . . scaffold12 GLEAN mRNA 80352 81242 0.970587 - . ID=CGI_10018018; scaffold12 GLEAN promoter 81243 82242 0.970587 - . ID=CGI_10018018; scaffold12 GLEAN mRNA 82484 100318 0.999676 - . ID=CGI_10018019; scaffold12 GLEAN promoter 91041 92040 0.987993 + . ID=CGI_10018020; scaffold12 GLEAN mRNA 92041 103207 0.987993 + . ID=CGI_10018020; scaffold12 GLEAN promoter 100319 101318 0.999676 - . ID=CGI_10018019; scaffold12 GLEAN promoter 103938 104937 0.992434 + . ID=CGI_10018022; scaffold12 GLEAN mRNA 104092 105020 0.5 - . ID=CGI_10018021; scaffold12 GLEAN mRNA 104938 131011 0.992434 + . ID=CGI_10018022; scaffold12 GLEAN promoter 105021 106020 0.5 - . ID=CGI_10018021; scaffold12 TRF Tandem_Repeat 112711 112760 100 + . . scaffold12 GLEAN mRNA 120627 124770 0.446128 - . ID=CGI_10018023; scaffold12 GLEAN promoter 124771 125770 0.446128 - . ID=CGI_10018023; scaffold12 GLEAN promoter 130114 131113 1 + . ID=CGI_10018024; scaffold12 GLEAN mRNA 131114 135208 1 + . ID=CGI_10018024; scaffold12 TRF Tandem_Repeat 132367 132686 326 + . . scaffold12 TRF Tandem_Repeat 132367 132686 277 + . . scaffold12 GLEAN mRNA 138538 141177 1 - . ID=CGI_10018025; scaffold12 GLEAN promoter 141178 142177 1 - . ID=CGI_10018025; scaffold12 GLEAN promoter 142230 143229 1 + . ID=CGI_10018026; scaffold12 GLEAN mRNA 143230 145280 1 + . ID=CGI_10018026; scaffold12 GLEAN promoter 146040 147039 1 + . ID=CGI_10018027; scaffold12 GLEAN mRNA 147040 149366 1 + . ID=CGI_10018027; scaffold12 TRF Tandem_Repeat 168287 168324 67 + . . scaffold12 GLEAN promoter 170307 171306 0.996819 + . ID=CGI_10018028; scaffold12 GLEAN mRNA 171307 173052 0.996819 + . ID=CGI_10018028; scaffold12 GLEAN promoter 177318 178317 1 + . ID=CGI_10018029; scaffold12 GLEAN mRNA 178318 185259 1 + . ID=CGI_10018029; scaffold12 TRF Tandem_Repeat 178614 179015 313 + . . scaffold12 TRF Tandem_Repeat 178614 178999 376 + . . scaffold12 TRF Tandem_Repeat 184436 184770 445 + . . scaffold12 TRF Tandem_Repeat 187809 187927 118 + . . scaffold12 TRF Tandem_Repeat 188847 188880 50 + . . scaffold12 TRF Tandem_Repeat 192029 192164 100 + . . scaffold12 TRF Tandem_Repeat 192046 192164 118 + . . scaffold12 TRF Tandem_Repeat 193081 193118 58 + . . scaffold12 GLEAN promoter 193877 194876 0.88989 + . ID=CGI_10018030; scaffold12 WUBlastX DNA_TcMar-Tc1 193904 194203 70 - . . scaffold12 GLEAN mRNA 194877 201025 0.88989 + . ID=CGI_10018030; scaffold12 WUBlastX LTR_DIRS 201733 202632 389 - . . scaffold12 WUBlastX LTR_DIRS 201736 202815 369 - . . scaffold12 WUBlastX LTR_DIRS 202533 203144 250 - . . scaffold12 WUBlastX LTR_DIRS 202686 203228 162 - . . scaffold12 WUBlastX LINE_L1-Tx1 209434 209691 21 - . . scaffold12 WUBlastX LINE_L1-Tx1 209491 209592 35 - . . scaffold12 WUBlastX LINE_L1-Tx1 209506 209709 35 - . . scaffold12 WUBlastX LINE_L1-Tx1 209655 210167 95 - . . scaffold12 WUBlastX LINE_L1-Tx1 210152 210265 31 - . . scaffold12 GLEAN mRNA 210304 210660 0.969683 - . ID=CGI_10018031; scaffold12 GLEAN promoter 210661 211660 0.969683 - . ID=CGI_10018031; scaffold12 WUBlastX LINE_R1 210924 211061 31 - . . scaffold12 TRF Tandem_Repeat 219904 219957 99 + . . scaffold12 TRF Tandem_Repeat 222100 222144 90 + . . scaffold12 GLEAN mRNA 228733 229155 1 - . ID=CGI_10018032; scaffold12 GLEAN promoter 229156 230155 1 - . ID=CGI_10018032; scaffold12 WUBlastX LINE_RTE-BovB 233775 233852 22 + . . scaffold12 WUBlastX LINE_RTE-BovB 233852 233950 36 + . . scaffold12 WUBlastX LINE_RTE-BovB 233914 234213 168 + . . scaffold12 WUBlastX DNA_TcMar-Pogo 234753 235286 241 + . . scaffold12 WUBlastX DNA_TcMar-Pogo 235357 235566 159 + . . scaffold12 WUBlastX DNA_TcMar-Pogo 235563 236402 249 + . . scaffold12 WUBlastX LINE_RTE-BovB 236530 237111 35 + . . scaffold12 WUBlastX LINE_RTE-BovB 236619 236768 65 + . . scaffold12 WUBlastX LINE_RTE-BovB 236664 236768 76 + . . scaffold12 WUBlastX LINE_RTE-BovB 236782 238212 380 + . . scaffold12 WUBlastX LINE_RTE-BovB 237133 238218 622 + . . scaffold12 TRF Tandem_Repeat 238412 238470 118 + . . scaffold12 GLEAN promoter 238507 239506 0.994211 + . ID=CGI_10018033; scaffold12 GLEAN mRNA 239507 250665 0.994211 + . ID=CGI_10018033; scaffold12 TRF Tandem_Repeat 241874 241906 66 + . . scaffold12 TRF Tandem_Repeat 242177 242826 799 + . . scaffold12 TRF Tandem_Repeat 242834 242908 69 + . . scaffold12 TRF Tandem_Repeat 242837 242907 97 + . . scaffold12 TRF Tandem_Repeat 243698 243765 118 + . . scaffold12 TRF Tandem_Repeat 243893 243962 124 + . . scaffold12 TRF Tandem_Repeat 244002 244365 427 + . . scaffold12 TRF Tandem_Repeat 245476 245535 111 + . . scaffold12 TRF Tandem_Repeat 250803 250827 50 + . . scaffold12 WUBlastX LINE_RTE-X 251764 252351 308 - . . scaffold12 TRF Tandem_Repeat 252559 252585 54 + . . scaffold12 GLEAN promoter 254141 255140 0.989737 + . ID=CGI_10018034; scaffold12 GLEAN mRNA 255141 257609 0.989737 + . ID=CGI_10018034; scaffold12 GLEAN promoter 266946 267945 0.996199 + . ID=CGI_10018035; scaffold12 GLEAN mRNA 267946 269457 0.996199 + . ID=CGI_10018035; scaffold12 GLEAN promoter 271680 272679 0.995804 + . ID=CGI_10018036; scaffold12 GLEAN mRNA 272680 275142 0.995804 + . ID=CGI_10018036; scaffold12 GLEAN mRNA 277879 280248 0.988699 - . ID=CGI_10018037; scaffold12 GLEAN promoter 280249 281248 0.988699 - . ID=CGI_10018037; scaffold12 GLEAN promoter 283789 284788 0.999933 + . ID=CGI_10018038; scaffold12 GLEAN mRNA 284789 287251 0.999933 + . ID=CGI_10018038; scaffold12 GLEAN mRNA 290334 319375 0.793549 - . ID=CGI_10018039; scaffold12 WUBlastX LTR_Gypsy 292114 292296 39 - . . scaffold12 TRF Tandem_Repeat 292426 292456 62 + . . scaffold12 WUBlastX LTR_Gypsy 293491 293694 34 - . . scaffold12 WUBlastX LTR_Gypsy 293557 293745 24 - . . scaffold12 WUBlastX LTR_Gypsy 294404 294574 23 - . . scaffold12 WUBlastX LTR_Gypsy 295322 295633 65 - . . scaffold12 GLEAN promoter 298276 299275 0.531613 + . ID=CGI_10018040; scaffold12 GLEAN mRNA 299276 301921 0.531613 + . ID=CGI_10018040; scaffold12 TRF Tandem_Repeat 302321 302506 311 + . . scaffold12 WUBlastX LTR_Gypsy 307677 307892 48 - . . scaffold12 WUBlastX LTR_Gypsy 308751 308921 20 - . . scaffold12 WUBlastX LTR_Gypsy 309316 309420 33 - . . scaffold12 GLEAN promoter 318502 319501 0.999647 + . ID=CGI_10018041; scaffold12 GLEAN promoter 319376 320375 0.793549 - . ID=CGI_10018039; scaffold12 GLEAN mRNA 319502 324125 0.999647 + . ID=CGI_10018041; scaffold12 TRF Tandem_Repeat 319945 319981 74 + . . scaffold12 TRF Tandem_Repeat 325475 325517 86 + . . scaffold12 GLEAN promoter 325477 326476 0.999321 + . ID=CGI_10018042; scaffold12 GLEAN mRNA 326477 354530 0.999321 + . ID=CGI_10018042; scaffold12 TRF Tandem_Repeat 328439 328483 81 + . . scaffold12 WUBlastX LTR_Gypsy 336484 336567 22 + . . scaffold12 WUBlastX LTR_Gypsy 339343 339486 24 + . . scaffold12 WUBlastX LTR_Gypsy 340896 341039 29 + . . scaffold12 WUBlastX LTR_Gypsy 343561 343653 30 + . . scaffold12 WUBlastX LTR_Gypsy 344503 344856 58 + . . scaffold12 WUBlastX LTR_Gypsy 345338 345514 20 + . . scaffold12 WUBlastX LTR_Gypsy 347139 347258 22 + . . scaffold12 WUBlastX LTR_Gypsy 350362 350619 28 + . . scaffold12 WUBlastX LTR_Gypsy 351109 351246 29 + . . scaffold12 WUBlastX LTR_Gypsy 351148 351246 35 + . . scaffold12 WUBlastX LTR_Gypsy 351628 351786 31 + . . scaffold12 GLEAN mRNA 357896 367528 0.879216 - . ID=CGI_10018043; scaffold12 TRF Tandem_Repeat 358133 358187 110 + . . scaffold12 TRF Tandem_Repeat 359420 359817 565 + . . scaffold12 TRF Tandem_Repeat 359420 359817 633 + . . scaffold12 GLEAN promoter 367529 368528 0.879216 - . ID=CGI_10018043; scaffold12 TRF Tandem_Repeat 369899 370854 697 + . . scaffold12 TRF Tandem_Repeat 369917 370854 578 + . . scaffold12 TRF Tandem_Repeat 376478 376533 103 + . . scaffold12 GLEAN mRNA 377617 384662 0.907293 - . ID=CGI_10018044; scaffold12 TRF Tandem_Repeat 384204 384228 50 + . . scaffold12 GLEAN promoter 384663 385662 0.907293 - . ID=CGI_10018044; scaffold12 GLEAN mRNA 384719 395223 1 - . ID=CGI_10018045; scaffold12 TRF Tandem_Repeat 389596 389656 122 + . . scaffold12 GLEAN promoter 395224 396223 1 - . ID=CGI_10018045; scaffold12 GLEAN promoter 407736 408735 0.999415 + . ID=CGI_10018046; scaffold12 GLEAN mRNA 408736 410554 0.999415 + . ID=CGI_10018046; scaffold12 GLEAN mRNA 413569 435997 0.585202 - . ID=CGI_10018047; scaffold12 TRF Tandem_Repeat 414934 415268 519 + . . scaffold12 TRF Tandem_Repeat 416644 416683 80 + . . scaffold12 TRF Tandem_Repeat 417885 418873 1627 + . . scaffold12 GLEAN promoter 420628 421627 0.543731 + . ID=CGI_10018048; scaffold12 GLEAN mRNA 421628 435704 0.543731 + . ID=CGI_10018048; scaffold12 GLEAN promoter 435056 436055 0.999659 + . ID=CGI_10018049; scaffold12 GLEAN promoter 435998 436997 0.585202 - . ID=CGI_10018047; scaffold12 GLEAN mRNA 436056 449453 0.999659 + . ID=CGI_10018049; scaffold12 TRF Tandem_Repeat 437974 438016 79 + . . scaffold12 TRF Tandem_Repeat 440459 440497 78 + . . scaffold12 GLEAN mRNA 441940 443343 0.999661 - . ID=CGI_10018050; scaffold12 GLEAN promoter 443344 444343 0.999661 - . ID=CGI_10018050; scaffold12 GLEAN mRNA 459176 498976 0.706488 - . ID=CGI_10018051; scaffold12 TRF Tandem_Repeat 461393 461428 72 + . . scaffold12 TRF Tandem_Repeat 469094 469134 82 + . . scaffold12 TRF Tandem_Repeat 470452 470738 251 + . . scaffold12 TRF Tandem_Repeat 470452 470800 309 + . . scaffold12 TRF Tandem_Repeat 470454 470800 291 + . . scaffold12 TRF Tandem_Repeat 491615 492741 1641 + . . scaffold12 TRF Tandem_Repeat 492765 492798 50 + . . scaffold12 GLEAN promoter 498977 499976 0.706488 - . ID=CGI_10018051; scaffold12 GLEAN mRNA 500110 500301 0.997295 - . ID=CGI_10018052; scaffold12 GLEAN promoter 500302 501301 0.997295 - . ID=CGI_10018052; scaffold12 TRF Tandem_Repeat 500744 500996 364 + . . scaffold12 TRF Tandem_Repeat 506459 506489 62 + . . scaffold12 WUBlastX DNA_TcMar-Tc1 511524 511691 33 - . . scaffold12 WUBlastX DNA_TcMar-Tc1 511693 512289 61 - . . scaffold12 WUBlastX DNA_TcMar-Tc1 511849 512316 113 - . . scaffold12 TRF Tandem_Repeat 513802 514819 1520 + . . scaffold12 TRF Tandem_Repeat 516250 516278 58 + . . scaffold12 TRF Tandem_Repeat 522116 522393 300 + . . scaffold12 WUBlastX LINE_L2 522486 524270 924 + . . scaffold12 WUBlastX LINE_L2 523896 524423 89 + . . scaffold12 WUBlastX LINE_CR1-L2 524392 524796 143 + . . scaffold12 WUBlastX LINE_CR1-L2 524802 525056 36 + . . scaffold12 WUBlastX DNA_Harbinger 525609 525878 98 - . . scaffold12 GLEAN mRNA 528217 532736 0.999864 - . ID=CGI_10018053; scaffold12 TRF Tandem_Repeat 531705 532138 455 + . . scaffold12 TRF Tandem_Repeat 531885 532109 91 + . . scaffold12 GLEAN promoter 532737 533373 0.999864 - . ID=CGI_10018053; scaffold120 TRF Tandem_Repeat 468 893 543 + . . scaffold120 WUBlastX DNA_TcMar-Tc1 5200 5379 49 - . . scaffold120 TRF Tandem_Repeat 5771 5843 130 + . . scaffold120 WUBlastX LINE_RTE-X 11924 12400 73 - . . scaffold120 WUBlastX LINE_RTE-X 12005 12403 145 - . . scaffold120 WUBlastX LINE_RTE-X 12364 12594 39 - . . scaffold120 WUBlastX LINE_RTE-X 12448 12597 80 - . . scaffold120 WUBlastX LINE_Rex-Babar 13299 13691 64 - . . scaffold120 WUBlastX LINE_RTE-X 13377 13769 203 - . . scaffold120 WUBlastX LINE_CR1 13461 13835 55 - . . scaffold120 WUBlastX LINE_Rex-Babar 13946 14020 25 - . . scaffold120 WUBlastX LINE_L1 13984 14286 132 - . . scaffold120 WUBlastX LINE_L1 13990 14370 118 - . . scaffold120 TRF Tandem_Repeat 15209 15239 62 + . . scaffold120 TRF Tandem_Repeat 16606 16636 62 + . . scaffold120 TRF Tandem_Repeat 17185 17214 60 + . . scaffold120 TRF Tandem_Repeat 18090 18137 96 + . . scaffold120 TRF Tandem_Repeat 22008 22072 130 + . . scaffold120 TRF Tandem_Repeat 22810 23455 909 + . . scaffold120 TRF Tandem_Repeat 24707 24731 50 + . . scaffold120 TRF Tandem_Repeat 25712 25794 152 + . . scaffold120 GLEAN promoter 27208 28207 0.998974 + . ID=CGI_10017521; scaffold120 GLEAN mRNA 28208 47298 0.998974 + . ID=CGI_10017521; scaffold120 TRF Tandem_Repeat 29671 29736 114 + . . scaffold120 TRF Tandem_Repeat 36078 36139 61 + . . scaffold120 TRF Tandem_Repeat 39597 39631 70 + . . scaffold120 TRF Tandem_Repeat 40402 40456 110 + . . scaffold120 TRF Tandem_Repeat 40713 41907 1493 + . . scaffold120 TRF Tandem_Repeat 42885 43260 556 + . . scaffold120 TRF Tandem_Repeat 46498 46825 333 + . . scaffold120 TRF Tandem_Repeat 46498 46819 350 + . . scaffold120 TRF Tandem_Repeat 48346 48451 177 + . . scaffold120 GLEAN promoter 49233 50232 0.650712 + . ID=CGI_10017522; scaffold120 GLEAN mRNA 50233 58656 0.650712 + . ID=CGI_10017522; scaffold120 TRF Tandem_Repeat 51329 51372 52 + . . scaffold120 TRF Tandem_Repeat 57780 57995 360 + . . scaffold120 TRF Tandem_Repeat 59305 59808 604 + . . scaffold120 TRF Tandem_Repeat 62750 62848 123 + . . scaffold120 TRF Tandem_Repeat 63194 63275 164 + . . scaffold120 TRF Tandem_Repeat 64599 64709 129 + . . scaffold120 TRF Tandem_Repeat 66236 66275 55 + . . scaffold120 GLEAN promoter 70731 71730 0.651133 + . ID=CGI_10017523; scaffold120 GLEAN mRNA 71731 91557 0.651133 + . ID=CGI_10017523; scaffold120 GLEAN mRNA 75291 75881 1 - . ID=CGI_10017524; scaffold120 GLEAN promoter 75882 76881 1 - . ID=CGI_10017524; scaffold120 TRF Tandem_Repeat 102024 102122 71 + . . scaffold120 GLEAN mRNA 108665 112274 0.999957 - . ID=CGI_10017525; scaffold120 GLEAN promoter 112275 113274 0.999957 - . ID=CGI_10017525; scaffold120 TRF Tandem_Repeat 115118 115164 60 + . . scaffold120 TRF Tandem_Repeat 115121 115149 58 + . . scaffold120 TRF Tandem_Repeat 120168 120225 116 + . . scaffold120 TRF Tandem_Repeat 128688 128737 100 + . . scaffold120 GLEAN mRNA 137499 140263 0.854554 - . ID=CGI_10017526; scaffold120 GLEAN promoter 140264 141263 0.854554 - . ID=CGI_10017526; scaffold120 TRF Tandem_Repeat 145448 145488 82 + . . scaffold120 TRF Tandem_Repeat 146643 146682 80 + . . scaffold120 WUBlastX LINE_L2 146684 146878 34 + . . scaffold120 TRF Tandem_Repeat 147091 147143 106 + . . scaffold120 GLEAN mRNA 152926 159753 0.998095 - . ID=CGI_10017528; scaffold120 GLEAN promoter 159118 160117 0.998897 + . ID=CGI_10017529; scaffold120 GLEAN promoter 159754 160753 0.998095 - . ID=CGI_10017528; scaffold120 GLEAN mRNA 160118 163254 0.998897 + . ID=CGI_10017529; scaffold120 GLEAN mRNA 164510 170375 0.999862 - . ID=CGI_10017530; scaffold120 GLEAN promoter 169337 170336 1 + . ID=CGI_10017531; scaffold120 GLEAN mRNA 170337 173561 1 + . ID=CGI_10017531; scaffold120 GLEAN promoter 170376 171375 0.999862 - . ID=CGI_10017530; scaffold120 GLEAN mRNA 176435 188183 1 - . ID=CGI_10017532; scaffold120 GLEAN promoter 188184 189183 1 - . ID=CGI_10017532; scaffold120 GLEAN promoter 190411 191410 1 + . ID=CGI_10017533; scaffold120 GLEAN mRNA 191411 192620 1 + . ID=CGI_10017533; scaffold120 GLEAN mRNA 195224 226189 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 196098 196839 982 + . . scaffold120 TRF Tandem_Repeat 196098 196839 978 + . . scaffold120 TRF Tandem_Repeat 198046 198667 796 + . . scaffold120 TRF Tandem_Repeat 198046 198667 857 + . . scaffold120 TRF Tandem_Repeat 208025 208052 56 + . . scaffold120 TRF Tandem_Repeat 215211 215489 341 + . . scaffold120 TRF Tandem_Repeat 216020 217906 3486 + . . scaffold120 WUBlastX DNA_Crypton 219356 219910 117 - . . scaffold120 WUBlastX DNA_Crypton 220071 220136 22 - . . scaffold120 WUBlastX DNA_Crypton 220262 220918 244 - . . scaffold120 GLEAN promoter 226190 227189 0.999675 - . ID=CGI_10017534; scaffold120 TRF Tandem_Repeat 227585 227623 69 + . . scaffold120 GLEAN mRNA 229839 251667 0.99907 - . ID=CGI_10017535; scaffold120 TRF Tandem_Repeat 236663 236688 52 + . . scaffold120 TRF Tandem_Repeat 237022 237071 91 + . . scaffold120 TRF Tandem_Repeat 238599 238637 78 + . . scaffold120 TRF Tandem_Repeat 238744 238778 70 + . . scaffold120 GLEAN promoter 244255 245254 0.996599 + . ID=CGI_10017536; scaffold120 GLEAN mRNA 245255 255266 0.996599 + . ID=CGI_10017536; scaffold120 GLEAN promoter 251668 252667 0.99907 - . ID=CGI_10017535; scaffold120 GLEAN promoter 255099 256098 1 + . ID=CGI_10017537; scaffold120 GLEAN mRNA 256099 261491 1 + . ID=CGI_10017537; scaffold120 TRF Tandem_Repeat 258933 260051 1487 + . . scaffold120 GLEAN mRNA 264767 312671 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 266461 266704 218 + . . scaffold120 TRF Tandem_Repeat 273885 273935 57 + . . scaffold120 TRF Tandem_Repeat 283525 283553 58 + . . scaffold120 TRF Tandem_Repeat 284840 285116 374 + . . scaffold120 TRF Tandem_Repeat 290001 290086 118 + . . scaffold120 TRF Tandem_Repeat 291694 291860 100 + . . scaffold120 TRF Tandem_Repeat 291749 291860 188 + . . scaffold120 TRF Tandem_Repeat 305656 305843 112 + . . scaffold120 GLEAN promoter 312672 313671 0.609557 - . ID=CGI_10017538; scaffold120 TRF Tandem_Repeat 312964 313008 90 + . . scaffold120 WUBlastX LINE_L1-Tx1 318727 318939 36 - . . scaffold120 WUBlastX LINE_L1-Tx1 318817 318975 61 - . . scaffold120 GLEAN mRNA 323745 354228 0.861367 - . ID=CGI_10017539; scaffold120 TRF Tandem_Repeat 325733 325893 178 + . . scaffold120 TRF Tandem_Repeat 325899 326105 145 + . . scaffold120 TRF Tandem_Repeat 326191 326277 104 + . . scaffold120 TRF Tandem_Repeat 340615 340723 62 + . . scaffold120 TRF Tandem_Repeat 349949 350007 109 + . . scaffold120 GLEAN promoter 354229 355228 0.861367 - . ID=CGI_10017539; scaffold120 GLEAN mRNA 362309 368930 0.999415 - . ID=CGI_10017540; scaffold120 GLEAN promoter 368931 369930 0.999415 - . ID=CGI_10017540; scaffold120 GLEAN mRNA 371084 372442 0.999998 - . ID=CGI_10017541; scaffold120 GLEAN promoter 372443 373442 0.999998 - . ID=CGI_10017541; scaffold120 TRF Tandem_Repeat 380811 380855 90 + . . scaffold120 GLEAN promoter 384347 385346 0.718565 + . ID=CGI_10017542; scaffold120 GLEAN mRNA 385347 385751 0.718565 + . ID=CGI_10017542; scaffold120 GLEAN mRNA 390026 396194 0.789057 - . ID=CGI_10017543; scaffold120 TRF Tandem_Repeat 392027 392077 102 + . . scaffold120 GLEAN promoter 396195 397194 0.789057 - . ID=CGI_10017543; scaffold120 GLEAN promoter 398880 399879 1 + . ID=CGI_10017544; scaffold120 GLEAN mRNA 399880 403955 1 + . ID=CGI_10017544; scaffold120 TRF Tandem_Repeat 400925 401165 228 + . . scaffold120 WUBlastX LINE_RTE-X 405878 406081 45 + . . scaffold120 GLEAN promoter 417568 418567 1 + . ID=CGI_10017545; scaffold120 GLEAN mRNA 418568 425064 1 + . ID=CGI_10017545; scaffold120 GLEAN promoter 426778 427777 0.999999 + . ID=CGI_10017546; scaffold120 GLEAN mRNA 427778 436548 0.999999 + . ID=CGI_10017546; scaffold120 GLEAN mRNA 437405 441654 0.734547 - . ID=CGI_10017547; scaffold120 TRF Tandem_Repeat 440048 440179 183 + . . scaffold120 TRF Tandem_Repeat 440048 440208 176 + . . scaffold120 GLEAN promoter 441655 442654 0.734547 - . ID=CGI_10017547; scaffold120 GLEAN mRNA 442918 447274 0.734569 - . ID=CGI_10017548; scaffold120 GLEAN promoter 447275 448274 0.734569 - . ID=CGI_10017548; scaffold120 WUBlastX LINE_RTE-X 454513 454755 102 + . . scaffold120 TRF Tandem_Repeat 455107 455136 51 + . . scaffold120 GLEAN mRNA 456019 456969 0.777732 - . ID=CGI_10017549; scaffold120 GLEAN promoter 456970 457969 0.777732 - . ID=CGI_10017549; scaffold120 WUBlastX LINE_L2 460941 461468 78 + . . scaffold120 WUBlastX LINE_RTE-X 461025 461582 171 + . . scaffold120 WUBlastX LINE_RTE-X 461043 461498 211 + . . scaffold120 TRF Tandem_Repeat 463470 463535 82 + . . scaffold120 TRF Tandem_Repeat 463473 463530 91 + . . scaffold120 WUBlastX DNA_Sola 466942 467268 96 + . . scaffold120 TRF Tandem_Repeat 467275 467303 58 + . . scaffold120 WUBlastX LTR_DIRS 467397 467945 61 + . . scaffold120 WUBlastX LTR_DIRS 468609 468851 48 + . . scaffold120 WUBlastX LTR_DIRS 469068 469205 31 + . . scaffold120 TRF Tandem_Repeat 469439 469492 99 + . . scaffold120 TRF Tandem_Repeat 480014 480056 68 + . . scaffold120 GLEAN promoter 487674 488673 0.732746 + . ID=CGI_10017550; scaffold120 TRF Tandem_Repeat 487809 487864 112 + . . scaffold120 GLEAN mRNA 488674 498689 0.732746 + . ID=CGI_10017550; scaffold120 WUBlastX RC_Helitron 492991 493599 70 + . . scaffold120 TRF Tandem_Repeat 496512 496547 63 + . . scaffold120 GLEAN mRNA 499980 508151 0.54629 - . ID=CGI_10017551; scaffold120 TRF Tandem_Repeat 500774 501741 1524 + . . scaffold120 GLEAN promoter 508152 508621 0.54629 - . ID=CGI_10017551; scaffold1200 GLEAN mRNA 1164 9732 0.646718 - . ID=CGI_10007614; scaffold1200 TRF Tandem_Repeat 3503 3659 143 + . . scaffold1200 TRF Tandem_Repeat 6758 6786 51 + . . scaffold1200 GLEAN promoter 9733 10732 0.646718 - . ID=CGI_10007614; scaffold1200 TRF Tandem_Repeat 34447 34503 59 + . . scaffold1200 TRF Tandem_Repeat 34448 34503 69 + . . scaffold1200 TRF Tandem_Repeat 34449 34504 58 + . . scaffold1200 WUBlastX LINE_L2 35018 35404 39 + . . scaffold1200 WUBlastX LINE_RTE-X 35102 35368 83 + . . scaffold1200 WUBlastX LINE_RTE-X 35884 36012 20 - . . scaffold1200 WUBlastX LINE_RTE-X 35953 36012 25 - . . scaffold1200 WUBlastX LINE_Jockey 35991 36074 22 - . . scaffold1200 WUBlastX LINE_RTE-X 36130 36810 165 - . . scaffold1200 WUBlastX LINE_RTE-BovB 36526 36870 29 - . . scaffold1200 TRF Tandem_Repeat 37123 38468 1467 + . . scaffold1200 TRF Tandem_Repeat 37708 38468 1055 + . . scaffold1200 WUBlastX LINE_RTE-X 39020 39139 25 - . . scaffold1200 GLEAN promoter 41358 42357 0.839244 + . ID=CGI_10007616; scaffold1200 WUBlastX LINE_RTE-X 41388 41783 72 - . . scaffold1200 GLEAN mRNA 42358 50314 0.839244 + . ID=CGI_10007616; scaffold1200 GLEAN promoter 49467 50466 0.650279 + . ID=CGI_10007617; scaffold1200 GLEAN mRNA 50467 56380 0.650279 + . ID=CGI_10007617; scaffold1200 TRF Tandem_Repeat 60040 60064 50 + . . scaffold1200 TRF Tandem_Repeat 73223 73285 117 + . . scaffold1200 TRF Tandem_Repeat 73799 73826 56 + . . scaffold1200 TRF Tandem_Repeat 74465 74514 84 + . . scaffold1200 TRF Tandem_Repeat 88415 88457 70 + . . scaffold1200 TRF Tandem_Repeat 95016 95077 124 + . . scaffold1200 GLEAN promoter 101018 102017 0.618241 + . ID=CGI_10007618; scaffold1200 GLEAN mRNA 102018 102305 0.618241 + . ID=CGI_10007618; scaffold1200 WUBlastX LINE_CR1-L2 102057 102242 116 + . . scaffold1200 WUBlastX LINE_L2 102613 102828 40 + . . scaffold1200 WUBlastX LINE_CR1-L2 102650 103666 212 + . . scaffold1200 WUBlastX LINE_L2 102803 103666 419 + . . scaffold1200 GLEAN promoter 104674 105673 0.999998 + . ID=CGI_10007619; scaffold1200 GLEAN promoter 104941 105940 1 + . ID=CGI_10007620; scaffold1200 GLEAN mRNA 105674 105938 0.999998 + . ID=CGI_10007619; scaffold1200 GLEAN mRNA 105941 120042 1 + . ID=CGI_10007620; scaffold1200 TRF Tandem_Repeat 114700 115593 1068 + . . scaffold1200 TRF Tandem_Repeat 132185 132377 151 + . . scaffold1200 TRF Tandem_Repeat 138861 139470 640 + . . scaffold1200 TRF Tandem_Repeat 139871 140554 627 + . . scaffold1200 TRF Tandem_Repeat 139871 140554 706 + . . scaffold1200 GLEAN promoter 142603 143602 0.941626 + . ID=CGI_10007621; scaffold1200 GLEAN mRNA 143603 157584 0.941626 + . ID=CGI_10007621; scaffold1200 TRF Tandem_Repeat 151663 151689 54 + . . scaffold1200 TRF Tandem_Repeat 155672 155730 118 + . . scaffold1200 TRF Tandem_Repeat 156223 156259 74 + . . scaffold1200 TRF Tandem_Repeat 161675 161733 109 + . . scaffold1200 GLEAN mRNA 162971 167931 0.983119 - . ID=CGI_10007622; scaffold1200 WUBlastX DNA_IS4EU 164405 164557 52 - . . scaffold1200 GLEAN promoter 167569 168568 0.50263 + . ID=CGI_10007623; scaffold1200 GLEAN promoter 167932 168931 0.983119 - . ID=CGI_10007622; scaffold1200 GLEAN mRNA 168569 176730 0.50263 + . ID=CGI_10007623; scaffold1200 GLEAN mRNA 171739 183761 0.999322 - . ID=CGI_10007624; scaffold1200 GLEAN promoter 183762 184761 0.999322 - . ID=CGI_10007624; scaffold1200 TRF Tandem_Repeat 186390 186444 101 + . . scaffold1201 WUBlastX LTR_Gypsy 865 2172 379 + . . scaffold1201 WUBlastX LTR_Gypsy 4647 5339 305 - . . scaffold1201 WUBlastX LTR_Gypsy 4647 5141 333 - . . scaffold1203 GLEAN promoter 2115 3114 0.999824 + . ID=CGI_10010414; scaffold1203 TRF Tandem_Repeat 2710 2751 59 + . . scaffold1203 GLEAN mRNA 3115 3642 0.999824 + . ID=CGI_10010414; scaffold1203 GLEAN mRNA 5894 12185 1 - . ID=CGI_10010415; scaffold1203 GLEAN promoter 11417 12416 1 + . ID=CGI_10010416; scaffold1203 GLEAN promoter 12186 13185 1 - . ID=CGI_10010415; scaffold1203 GLEAN mRNA 12417 13946 1 + . ID=CGI_10010416; scaffold1203 GLEAN mRNA 18017 28018 0.99967 - . ID=CGI_10010417; scaffold1203 TRF Tandem_Repeat 19111 19280 101 + . . scaffold1203 TRF Tandem_Repeat 19160 19359 140 + . . scaffold1203 TRF Tandem_Repeat 20252 21018 938 + . . scaffold1203 TRF Tandem_Repeat 21130 21161 55 + . . scaffold1203 GLEAN promoter 28019 29018 0.99967 - . ID=CGI_10010417; scaffold1203 TRF Tandem_Repeat 31424 31809 506 + . . scaffold1203 TRF Tandem_Repeat 32046 32629 624 + . . scaffold1203 GLEAN mRNA 33650 34831 0.53161 - . ID=CGI_10010418; scaffold1203 GLEAN promoter 34832 35831 0.53161 - . ID=CGI_10010418; scaffold1203 GLEAN promoter 38078 39077 0.989818 + . ID=CGI_10010419; scaffold1203 GLEAN mRNA 39078 44460 0.989818 + . ID=CGI_10010419; scaffold1203 GLEAN promoter 58713 59712 0.999661 + . ID=CGI_10010420; scaffold1203 GLEAN mRNA 59713 65707 0.999661 + . ID=CGI_10010420; scaffold1203 GLEAN mRNA 67728 72267 1 - . ID=CGI_10010421; scaffold1203 GLEAN promoter 72268 73267 1 - . ID=CGI_10010421; scaffold1203 GLEAN promoter 72780 73779 1 + . ID=CGI_10010422; scaffold1203 GLEAN mRNA 73780 77048 1 + . ID=CGI_10010422; scaffold1203 TRF Tandem_Repeat 77083 77353 470 + . . scaffold1203 TRF Tandem_Repeat 79195 79349 283 + . . scaffold1203 GLEAN mRNA 82861 91370 0.702281 - . ID=CGI_10010423; scaffold1203 GLEAN promoter 91371 92370 0.702281 - . ID=CGI_10010423; scaffold1203 GLEAN promoter 95599 96598 0.992512 + . ID=CGI_10010424; scaffold1203 GLEAN mRNA 96599 98385 0.992512 + . ID=CGI_10010424; scaffold1203 WUBlastX LINE_R2-Hero 96821 97435 67 + . . scaffold1203 WUBlastX LINE_R2-Hero 97426 97500 53 + . . scaffold1203 WUBlastX LINE_R2-Hero 98076 98174 43 + . . scaffold1203 GLEAN mRNA 100254 109397 0.922043 - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 106773 106827 83 + . . scaffold1203 TRF Tandem_Repeat 106901 106938 76 + . . scaffold1203 TRF Tandem_Repeat 108400 108479 90 + . . scaffold1203 TRF Tandem_Repeat 108401 108476 86 + . . scaffold1203 TRF Tandem_Repeat 108401 108477 84 + . . scaffold1203 GLEAN promoter 109398 110397 0.922043 - . ID=CGI_10010425; scaffold1203 TRF Tandem_Repeat 110001 110268 387 + . . scaffold1203 TRF Tandem_Repeat 110008 110261 152 + . . scaffold1203 TRF Tandem_Repeat 110316 110550 138 + . . scaffold1203 TRF Tandem_Repeat 110319 110550 86 + . . scaffold1203 GLEAN mRNA 115085 115630 0.908162 - . ID=CGI_10010426; scaffold1203 GLEAN promoter 115631 116630 0.908162 - . ID=CGI_10010426; scaffold1203 GLEAN promoter 115697 116696 0.995805 + . ID=CGI_10010427; scaffold1203 GLEAN mRNA 116697 139378 0.995805 + . ID=CGI_10010427; scaffold1203 TRF Tandem_Repeat 124561 124693 119 + . . scaffold1203 TRF Tandem_Repeat 126018 126559 798 + . . scaffold1203 TRF Tandem_Repeat 126562 126859 311 + . . scaffold1203 TRF Tandem_Repeat 132620 132665 58 + . . scaffold1203 TRF Tandem_Repeat 134260 135582 2265 + . . scaffold1203 GLEAN promoter 142882 143881 0.648541 + . ID=CGI_10010428; scaffold1203 GLEAN mRNA 143882 144388 0.648541 + . ID=CGI_10010428; scaffold1203 WUBlastX LINE_RTE-X 144260 144346 21 + . . scaffold1203 WUBlastX LINE_RTE-X 145087 145830 149 + . . scaffold1203 WUBlastX LINE_RTE-X 145237 146424 204 + . . scaffold1203 WUBlastX LINE_RTE-X 145237 145800 220 + . . scaffold1203 WUBlastX LINE_RTE-X 146242 146472 70 + . . scaffold1203 WUBlastX LINE_RTE-X 147378 147836 41 - . . scaffold1203 WUBlastX LINE_RTE-X 147534 147869 49 - . . scaffold1203 WUBlastX LINE_RTE-X 147537 147809 82 - . . scaffold1203 GLEAN promoter 148273 149272 0.996819 + . ID=CGI_10010429; scaffold1203 WUBlastX LINE_RTE-X 148289 148528 39 - . . scaffold1203 WUBlastX LINE_RTE-X 148295 148495 63 - . . scaffold1203 GLEAN mRNA 149273 149689 0.996819 + . ID=CGI_10010429; scaffold1203 GLEAN promoter 149282 150281 0.920094 + . ID=CGI_10010430; scaffold1203 GLEAN mRNA 150282 155736 0.920094 + . ID=CGI_10010430; scaffold1203 GLEAN mRNA 158086 158592 0.644676 - . ID=CGI_10010431; scaffold1203 GLEAN promoter 158593 159592 0.644676 - . ID=CGI_10010431; scaffold1203 WUBlastX LINE_L2 160166 160321 57 - . . scaffold1203 WUBlastX LINE_L2 160351 161205 344 - . . scaffold1203 WUBlastX LINE_CR1-L2 161210 161692 154 + . . scaffold1203 WUBlastX LINE_L2 161651 161944 204 + . . scaffold1203 WUBlastX LINE_CR1-L2 161702 162028 144 + . . scaffold1203 GLEAN mRNA 163824 172124 1 - . ID=CGI_10010432; scaffold1203 GLEAN promoter 172125 173124 1 - . ID=CGI_10010432; scaffold1203 GLEAN promoter 181998 182997 1 + . ID=CGI_10010433; scaffold1203 GLEAN mRNA 182998 190450 1 + . ID=CGI_10010433; scaffold1203 GLEAN mRNA 193479 196643 1 - . ID=CGI_10010434; scaffold1203 GLEAN promoter 196397 197396 0.937847 + . ID=CGI_10010435; scaffold1203 GLEAN promoter 196644 197643 1 - . ID=CGI_10010434; scaffold1203 TRF Tandem_Repeat 197168 197208 82 + . . scaffold1203 TRF Tandem_Repeat 197238 197268 53 + . . scaffold1203 GLEAN mRNA 197397 212310 0.937847 + . ID=CGI_10010435; scaffold1203 TRF Tandem_Repeat 201987 202031 90 + . . scaffold1203 TRF Tandem_Repeat 202054 202094 82 + . . scaffold1203 GLEAN promoter 216412 217411 0.699753 + . ID=CGI_10010436; scaffold1203 GLEAN mRNA 217412 218390 0.699753 + . ID=CGI_10010436; scaffold1203 TRF Tandem_Repeat 224734 224800 134 + . . scaffold1203 TRF Tandem_Repeat 228753 228798 51 + . . scaffold1203 GLEAN mRNA 229504 233988 0.999668 - . ID=CGI_10010437; scaffold1203 GLEAN promoter 233989 234988 0.999668 - . ID=CGI_10010437; scaffold1203 TRF Tandem_Repeat 237268 237306 78 + . . scaffold1203 TRF Tandem_Repeat 242440 242509 72 + . . scaffold1203 TRF Tandem_Repeat 242443 242504 63 + . . scaffold1203 TRF Tandem_Repeat 244670 244766 104 + . . scaffold1203 GLEAN mRNA 245128 262354 0.998693 - . ID=CGI_10010438; scaffold1203 TRF Tandem_Repeat 256022 256133 54 + . . scaffold1203 TRF Tandem_Repeat 256063 256212 58 + . . scaffold1203 TRF Tandem_Repeat 262138 262183 58 + . . scaffold1203 GLEAN promoter 262355 262963 0.998693 - . ID=CGI_10010438; scaffold1204 GLEAN promoter 14698 15697 1 + . ID=CGI_10009803; scaffold1204 GLEAN mRNA 15698 18046 1 + . ID=CGI_10009803; scaffold1204 GLEAN mRNA 17672 38672 0.500149 - . ID=CGI_10009804; scaffold1204 GLEAN promoter 19916 20915 0.585203 + . ID=CGI_10009805; scaffold1204 GLEAN mRNA 20916 22982 0.585203 + . ID=CGI_10009805; scaffold1204 GLEAN promoter 27091 28090 1 + . ID=CGI_10009806; scaffold1204 GLEAN mRNA 28091 30829 1 + . ID=CGI_10009806; scaffold1204 WUBlastX LTR_Pao 37639 37728 23 + . . scaffold1204 WUBlastX LTR_Pao 38424 40016 491 + . . scaffold1204 GLEAN promoter 38673 39672 0.500149 - . ID=CGI_10009804; scaffold1204 WUBlastX LTR_Pao 38676 40019 1240 + . . scaffold1204 WUBlastX LTR_Gypsy-Cigr 41857 42864 504 - . . scaffold1204 WUBlastX LTR_ERV1 42394 42972 125 - . . scaffold1204 WUBlastX LTR_Gypsy 42915 42989 49 - . . scaffold1204 WUBlastX LTR_Gypsy 42983 43069 48 - . . scaffold1204 WUBlastX LTR_Gypsy 43004 44350 458 - . . scaffold1204 WUBlastX LTR_Gypsy 44337 44660 233 - . . scaffold1204 WUBlastX LTR_Gypsy 44346 44717 82 - . . scaffold1204 WUBlastX DNA_TcMar-Marin 45815 46216 232 - . . scaffold1204 WUBlastX DNA_TcMar-Marin 46400 46540 28 - . . scaffold1204 WUBlastX DNA_TcMar-Marin 46468 46803 72 - . . scaffold1204 WUBlastX DNA_TcMar-Marin 46486 46770 108 - . . scaffold1204 TRF Tandem_Repeat 47376 47432 114 + . . scaffold1204 WUBlastX LTR_Gypsy 50032 50451 70 - . . scaffold1204 WUBlastX LTR_Gypsy 50035 50535 56 - . . scaffold1204 WUBlastX LTR_Gypsy 50858 51226 65 - . . scaffold1204 WUBlastX LINE_L1-Tx1 52953 53315 92 + . . scaffold1204 WUBlastX LINE_L1 53010 53300 102 + . . scaffold1204 GLEAN mRNA 59148 67801 0.377863 - . ID=CGI_10009807; scaffold1204 TRF Tandem_Repeat 67389 67420 55 + . . scaffold1204 GLEAN promoter 67802 68801 0.377863 - . ID=CGI_10009807; scaffold1204 TRF Tandem_Repeat 68390 68470 99 + . . scaffold1204 WUBlastX LINE_RTE-X 70946 71599 133 - . . scaffold1204 WUBlastX LINE_RTE-X 70991 71545 141 - . . scaffold1204 WUBlastX LINE_RTE-BovB 71962 72111 28 - . . scaffold1204 WUBlastX LTR_Ngaro 74245 74325 23 + . . scaffold1204 WUBlastX LTR_Ngaro 74419 74736 80 + . . scaffold1204 WUBlastX LTR_Pao 75595 76389 49 + . . scaffold1204 WUBlastX LTR_Pao 75910 77964 955 + . . scaffold1204 TRF Tandem_Repeat 94799 94828 51 + . . scaffold1204 WUBlastX LTR_Pao 95987 97261 85 + . . scaffold1204 WUBlastX LTR_Pao 96359 97258 269 + . . scaffold1204 WUBlastX LTR_Pao 99802 100017 103 + . . scaffold1204 WUBlastX LTR_Pao 100017 101393 1244 + . . scaffold1204 GLEAN promoter 110787 111786 0.75739 + . ID=CGI_10009809; scaffold1204 GLEAN mRNA 111787 113955 0.75739 + . ID=CGI_10009809; scaffold1204 TRF Tandem_Repeat 123526 123583 100 + . . scaffold1204 TRF Tandem_Repeat 123527 123580 65 + . . scaffold1204 TRF Tandem_Repeat 125007 125756 1080 + . . scaffold1204 GLEAN mRNA 128188 131105 1 - . ID=CGI_10009810; scaffold1204 GLEAN promoter 131106 132105 1 - . ID=CGI_10009810; scaffold1204 TRF Tandem_Repeat 131990 133630 2266 + . . scaffold1204 WUBlastX LINE_L1-Tx1 149574 150410 588 - . . scaffold1204 WUBlastX LINE_L1-Tx1 150655 150732 31 - . . scaffold1204 TRF Tandem_Repeat 152641 152674 59 + . . scaffold1204 TRF Tandem_Repeat 152865 152913 98 + . . scaffold1204 GLEAN mRNA 154258 155299 1 - . ID=CGI_10009811; scaffold1204 GLEAN promoter 155300 156299 1 - . ID=CGI_10009811; scaffold1204 GLEAN mRNA 157020 160885 1 - . ID=CGI_10009812; scaffold1204 TRF Tandem_Repeat 160068 160137 117 + . . scaffold1204 TRF Tandem_Repeat 160229 160272 88 + . . scaffold1204 GLEAN promoter 160886 161885 1 - . ID=CGI_10009812; scaffold1204 GLEAN mRNA 165439 172645 0.999624 - . ID=CGI_10009813; scaffold1204 TRF Tandem_Repeat 168565 168636 144 + . . scaffold1204 GLEAN promoter 172646 173645 0.999624 - . ID=CGI_10009813; scaffold1204 GLEAN mRNA 180240 221390 0.989868 - . ID=CGI_10009814; scaffold1204 TRF Tandem_Repeat 184885 185084 337 + . . scaffold1204 TRF Tandem_Repeat 199945 201279 1952 + . . scaffold1204 TRF Tandem_Repeat 201449 201486 58 + . . scaffold1204 GLEAN promoter 221391 222390 0.989868 - . ID=CGI_10009814; scaffold1204 TRF Tandem_Repeat 223918 224007 80 + . . scaffold1204 TRF Tandem_Repeat 225760 225795 63 + . . scaffold1204 GLEAN mRNA 230132 234413 0.999999 - . ID=CGI_10009815; scaffold1204 GLEAN promoter 234414 235413 0.999999 - . ID=CGI_10009815; scaffold1204 TRF Tandem_Repeat 235724 235890 120 + . . scaffold1204 GLEAN mRNA 238104 242592 1 - . ID=CGI_10009816; scaffold1204 GLEAN promoter 242593 243592 1 - . ID=CGI_10009816; scaffold1204 TRF Tandem_Repeat 243392 243521 81 + . . scaffold1205 WUBlastX LINE_CR1-L2 7239 7355 20 + . . scaffold1205 WUBlastX LINE_CR1-L2 7292 7678 44 + . . scaffold1205 WUBlastX LINE_L2 7376 7840 47 + . . scaffold1205 WUBlastX LINE_CR1-L2 7400 7678 98 + . . scaffold1205 WUBlastX LINE_L2 7409 7741 92 + . . scaffold1205 WUBlastX LINE_CR1-L2 7848 8066 28 + . . scaffold1205 WUBlastX LINE_CR1-L2 8174 8344 74 + . . scaffold1205 WUBlastX LINE_CR1-L2 8365 8655 25 + . . scaffold1205 WUBlastX LINE_L2 8603 8839 34 + . . scaffold1205 TRF Tandem_Repeat 9946 10174 192 + . . scaffold1205 GLEAN promoter 16146 17145 0.942142 + . ID=CGI_10004898; scaffold1205 GLEAN mRNA 17146 37045 0.942142 + . ID=CGI_10004898; scaffold1205 GLEAN promoter 37080 38079 0.481188 + . ID=CGI_10004899; scaffold1205 GLEAN mRNA 38080 38370 0.481188 + . ID=CGI_10004899; scaffold1205 WUBlastX LINE_Penelope 40679 40822 65 + . . scaffold1205 WUBlastX LINE_Penelope 40842 40997 71 + . . scaffold1205 WUBlastX LINE_Penelope 41017 41304 88 + . . scaffold1205 TRF Tandem_Repeat 43991 44039 98 + . . scaffold1205 TRF Tandem_Repeat 44094 44125 55 + . . scaffold1205 TRF Tandem_Repeat 44184 44217 68 + . . scaffold1205 TRF Tandem_Repeat 47650 47709 120 + . . scaffold1205 TRF Tandem_Repeat 52736 52797 81 + . . scaffold1205 TRF Tandem_Repeat 65301 65336 72 + . . scaffold1205 WUBlastX LTR_Gypsy 68067 68822 155 - . . scaffold1205 WUBlastX LTR_Gypsy 68184 69080 747 - . . scaffold1205 WUBlastX LTR_Gypsy 69849 69989 26 - . . scaffold1205 WUBlastX LTR_Gypsy 69930 70082 20 - . . scaffold1205 WUBlastX LTR_Gypsy 70167 70214 22 - . . scaffold1205 WUBlastX LTR_Gypsy 70281 70334 20 - . . scaffold1205 TRF Tandem_Repeat 73663 74400 915 + . . scaffold1205 TRF Tandem_Repeat 75117 75447 506 + . . scaffold1205 GLEAN promoter 84136 85135 1 + . ID=CGI_10004900; scaffold1205 GLEAN mRNA 85136 86524 1 + . ID=CGI_10004900; scaffold1205 GLEAN promoter 86059 87058 1 + . ID=CGI_10004901; scaffold1205 GLEAN mRNA 87059 89857 1 + . ID=CGI_10004901; scaffold1205 GLEAN promoter 92270 93269 0.999984 + . ID=CGI_10004902; scaffold1205 GLEAN mRNA 93270 94460 0.999984 + . ID=CGI_10004902; scaffold1205 GLEAN promoter 94118 95117 0.999998 + . ID=CGI_10004903; scaffold1205 TRF Tandem_Repeat 94594 94693 164 + . . scaffold1205 GLEAN mRNA 95118 102041 0.999998 + . ID=CGI_10004903; scaffold1205 GLEAN mRNA 96361 112859 0.994073 - . ID=CGI_10004904; scaffold1205 GLEAN promoter 101501 102500 0.618241 + . ID=CGI_10004905; scaffold1205 GLEAN mRNA 102501 102854 0.618241 + . ID=CGI_10004905; scaffold1205 WUBlastX DNA_Crypton 109567 109734 22 + . . scaffold1205 WUBlastX DNA_Crypton 109767 109997 90 + . . scaffold1205 WUBlastX DNA_Crypton 110065 110244 71 + . . scaffold1205 GLEAN promoter 112860 113859 0.994073 - . ID=CGI_10004904; scaffold1206 GLEAN promoter 23898 24897 0.905327 + . ID=CGI_10002106; scaffold1206 GLEAN mRNA 24898 29239 0.905327 + . ID=CGI_10002106; scaffold1206 TRF Tandem_Repeat 25221 26286 1204 + . . scaffold1206 WUBlastX LINE_L2 29519 29764 38 + . . scaffold1206 WUBlastX LINE_CR1-L2 29525 29707 45 + . . scaffold1206 WUBlastX LINE_I 29531 29665 53 + . . scaffold1206 GLEAN mRNA 34106 36074 1 - . ID=CGI_10002107; scaffold1206 TRF Tandem_Repeat 35358 35429 72 + . . scaffold1206 GLEAN promoter 36075 37074 1 - . ID=CGI_10002107; scaffold1207 WUBlastX LINE_L1-Tx1 576 1820 423 + . . scaffold1207 WUBlastX LINE_L1-Tx1 1377 3479 754 + . . scaffold1207 WUBlastX LINE_RTE-BovB 3719 3931 50 - . . scaffold1207 WUBlastX LINE_RTE-BovB 3722 4027 27 - . . scaffold1207 WUBlastX LINE_RTE-BovB 3743 3913 94 - . . scaffold1207 WUBlastX LINE_RTE-BovB 4597 4782 38 - . . scaffold1208 GLEAN mRNA 228 10200 0.999071 - . ID=CGI_10000904; scaffold1208 GLEAN promoter 10201 11200 0.999071 - . ID=CGI_10000904; scaffold1209 GLEAN promoter 1 181 1 + . ID=CGI_10007963; scaffold1209 GLEAN mRNA 182 2460 1 + . ID=CGI_10007963; scaffold1209 TRF Tandem_Repeat 7646 7683 76 + . . scaffold1209 WUBlastX RC_Helitron 8503 11436 1889 - . . scaffold1209 WUBlastX DNA_Helitron 11707 12363 57 - . . scaffold1209 WUBlastX RC_Helitron 11824 12354 70 - . . scaffold1209 TRF Tandem_Repeat 14946 15562 855 + . . scaffold1209 GLEAN mRNA 16133 36287 0.961312 - . ID=CGI_10007964; scaffold1209 TRF Tandem_Repeat 18907 18960 73 + . . scaffold1209 TRF Tandem_Repeat 18910 18959 57 + . . scaffold1209 WUBlastX LINE_RTE-X 20117 20191 27 - . . scaffold1209 WUBlastX LINE_RTE-X 20229 20642 45 - . . scaffold1209 WUBlastX LINE_RTE-X 20265 20609 99 - . . scaffold1209 WUBlastX LINE_L1 20640 20810 99 - . . scaffold1209 WUBlastX LINE_L2 20810 21298 122 - . . scaffold1209 WUBlastX LINE_L1 20840 21403 65 - . . scaffold1209 WUBlastX LINE_L1-Tx1 26308 27849 369 - . . scaffold1209 GLEAN promoter 36288 37287 0.961312 - . ID=CGI_10007964; scaffold1209 WUBlastX LINE_L1-Tx1 36597 36995 109 - . . scaffold1209 WUBlastX DNA_Maverick 53959 54558 126 + . . scaffold1209 WUBlastX DNA_Maverick 54079 54579 127 + . . scaffold1209 WUBlastX RC_Helitron 74369 74740 158 - . . scaffold1209 WUBlastX DNA_Helitron 74378 74935 137 - . . scaffold1209 WUBlastX LTR_Pao 80239 80658 113 + . . scaffold1209 WUBlastX LTR_Pao 80735 81292 56 + . . scaffold1209 WUBlastX LTR_Pao 80828 81295 314 + . . scaffold1209 WUBlastX LTR_Pao 80909 81259 329 + . . scaffold1209 WUBlastX LTR_Pao 81256 81858 295 + . . scaffold1209 WUBlastX LTR_Pao 81750 82214 283 + . . scaffold1209 WUBlastX DNA_Maverick 89692 89889 70 + . . scaffold1209 GLEAN mRNA 101278 101793 0.999661 - . ID=CGI_10007965; scaffold1209 WUBlastX LTR_Pao 101578 101712 20 - . . scaffold1209 GLEAN promoter 101763 102762 0.54485 + . ID=CGI_10007966; scaffold1209 GLEAN promoter 101794 102793 0.999661 - . ID=CGI_10007965; scaffold1209 GLEAN mRNA 102763 104699 0.54485 + . ID=CGI_10007966; scaffold1209 GLEAN mRNA 106847 123923 0.38603 - . ID=CGI_10007967; scaffold1209 WUBlastX DNA_En-Spm 112071 112589 250 + . . scaffold1209 WUBlastX LTR_Gypsy 117200 118390 461 - . . scaffold1209 TRF Tandem_Repeat 118920 119602 969 + . . scaffold1209 WUBlastX DNA_MuDR 121094 121453 58 - . . scaffold1209 WUBlastX DNA_MuDR 121133 121561 45 - . . scaffold1209 WUBlastX DNA_MuDR 121891 122082 52 - . . scaffold1209 GLEAN promoter 123924 124923 0.38603 - . ID=CGI_10007967; scaffold1209 TRF Tandem_Repeat 137445 137819 535 + . . scaffold1209 TRF Tandem_Repeat 141601 141901 539 + . . scaffold1209 GLEAN mRNA 142895 143890 0.990765 - . ID=CGI_10007968; scaffold1209 GLEAN promoter 143891 144890 0.990765 - . ID=CGI_10007968; scaffold1209 WUBlastX DNA_Maverick 144498 146246 1152 + . . scaffold1209 TRF Tandem_Repeat 172632 172668 74 + . . scaffold1209 GLEAN mRNA 173328 176009 0.8845 - . ID=CGI_10007969; scaffold1209 GLEAN promoter 176010 177009 0.8845 - . ID=CGI_10007969; scaffold1209 WUBlastX DNA_Zator 177583 177741 20 - . . scaffold1209 WUBlastX DNA_Zator 177899 178114 54 - . . scaffold1209 WUBlastX DNA_Zator 178323 178508 59 - . . scaffold1209 WUBlastX DNA_Zator 178641 179591 482 - . . scaffold1209 WUBlastX DNA_NOF 182081 182167 33 + . . scaffold1209 WUBlastX DNA_NOF? 182239 182523 81 + . . scaffold1209 GLEAN mRNA 188338 191888 0.469571 - . ID=CGI_10007970; scaffold1209 GLEAN promoter 191889 192888 0.469571 - . ID=CGI_10007970; scaffold1209 TRF Tandem_Repeat 194598 195028 657 + . . scaffold121 GLEAN promoter 1 852 0.702214 + . ID=CGI_10025630; scaffold121 GLEAN mRNA 853 12387 0.702214 + . ID=CGI_10025630; scaffold121 TRF Tandem_Repeat 9022 9158 213 + . . scaffold121 TRF Tandem_Repeat 18358 18413 112 + . . scaffold121 GLEAN promoter 21221 22220 0.365749 + . ID=CGI_10025631; scaffold121 GLEAN mRNA 22221 41511 0.365749 + . ID=CGI_10025631; scaffold121 TRF Tandem_Repeat 25487 27198 2309 + . . scaffold121 GLEAN promoter 40521 41520 0.999995 + . ID=CGI_10025632; scaffold121 GLEAN mRNA 41521 44980 0.999995 + . ID=CGI_10025632; scaffold121 GLEAN promoter 45526 46525 0.999995 + . ID=CGI_10025633; scaffold121 TRF Tandem_Repeat 46275 46322 96 + . . scaffold121 GLEAN mRNA 46526 52771 0.999995 + . ID=CGI_10025633; scaffold121 TRF Tandem_Repeat 46645 46873 156 + . . scaffold121 TRF Tandem_Repeat 46645 46873 188 + . . scaffold121 TRF Tandem_Repeat 47200 47286 102 + . . scaffold121 TRF Tandem_Repeat 49297 49326 60 + . . scaffold121 TRF Tandem_Repeat 49340 49372 57 + . . scaffold121 GLEAN mRNA 57000 70423 0.740138 - . ID=CGI_10025634; scaffold121 TRF Tandem_Repeat 64168 64225 116 + . . scaffold121 TRF Tandem_Repeat 68895 69043 160 + . . scaffold121 GLEAN promoter 70424 71423 0.740138 - . ID=CGI_10025634; scaffold121 TRF Tandem_Repeat 73109 73142 68 + . . scaffold121 TRF Tandem_Repeat 73620 73680 81 + . . scaffold121 TRF Tandem_Repeat 74763 74817 110 + . . scaffold121 GLEAN mRNA 76278 77403 1 - . ID=CGI_10025635; scaffold121 GLEAN promoter 77404 78403 1 - . ID=CGI_10025635; scaffold121 TRF Tandem_Repeat 78675 78729 110 + . . scaffold121 TRF Tandem_Repeat 82771 82830 99 + . . scaffold121 GLEAN mRNA 94648 106207 0.967884 - . ID=CGI_10025636; scaffold121 TRF Tandem_Repeat 102941 102974 50 + . . scaffold121 GLEAN promoter 106208 107207 0.967884 - . ID=CGI_10025636; scaffold121 TRF Tandem_Repeat 107001 107036 72 + . . scaffold121 TRF Tandem_Repeat 107684 107806 145 + . . scaffold121 TRF Tandem_Repeat 108610 108643 59 + . . scaffold121 TRF Tandem_Repeat 112357 112463 125 + . . scaffold121 TRF Tandem_Repeat 115811 115864 108 + . . scaffold121 GLEAN mRNA 146274 154766 1 - . ID=CGI_10025637; scaffold121 TRF Tandem_Repeat 149340 149466 98 + . . scaffold121 TRF Tandem_Repeat 153227 153265 78 + . . scaffold121 GLEAN promoter 154767 155766 1 - . ID=CGI_10025637; scaffold121 GLEAN promoter 156051 157050 0.999986 + . ID=CGI_10025638; scaffold121 GLEAN mRNA 157051 160550 0.999986 + . ID=CGI_10025638; scaffold121 TRF Tandem_Repeat 159616 159737 156 + . . scaffold121 TRF Tandem_Repeat 164928 164983 58 + . . scaffold121 TRF Tandem_Repeat 164937 164990 63 + . . scaffold121 TRF Tandem_Repeat 165014 165974 1468 + . . scaffold121 WUBlastX LINE_L2 173764 174255 169 - . . scaffold121 WUBlastX LINE_L2 173764 174165 209 - . . scaffold121 WUBlastX LINE_L2 174116 174304 52 - . . scaffold121 WUBlastX LINE_L2 174355 174615 147 - . . scaffold121 WUBlastX LINE_L2 174376 175044 91 - . . scaffold121 WUBlastX LINE_L2 174886 175155 27 - . . scaffold121 TRF Tandem_Repeat 177514 177617 167 + . . scaffold121 TRF Tandem_Repeat 177514 177627 119 + . . scaffold121 TRF Tandem_Repeat 182640 182817 80 + . . scaffold121 TRF Tandem_Repeat 183657 183687 53 + . . scaffold121 TRF Tandem_Repeat 183875 183924 100 + . . scaffold121 TRF Tandem_Repeat 184036 184078 77 + . . scaffold121 TRF Tandem_Repeat 185125 185302 80 + . . scaffold121 GLEAN mRNA 187589 192002 0.755624 - . ID=CGI_10025639; scaffold121 TRF Tandem_Repeat 188431 188684 203 + . . scaffold121 GLEAN promoter 188989 189988 0.838278 + . ID=CGI_10025640; scaffold121 GLEAN mRNA 189989 203691 0.838278 + . ID=CGI_10025640; scaffold121 GLEAN promoter 192003 193002 0.755624 - . ID=CGI_10025639; scaffold121 TRF Tandem_Repeat 193091 193131 82 + . . scaffold121 TRF Tandem_Repeat 193836 193909 148 + . . scaffold121 TRF Tandem_Repeat 196935 197022 126 + . . scaffold121 TRF Tandem_Repeat 200485 200578 64 + . . scaffold121 TRF Tandem_Repeat 200605 200654 100 + . . scaffold121 WUBlastX DNA_Harbinger 208061 208267 49 + . . scaffold121 WUBlastX DNA_Harbinger 208121 208270 65 + . . scaffold121 WUBlastX DNA_Harbinger 208981 209103 50 + . . scaffold121 WUBlastX LINE_CR1-L2 250923 251009 26 - . . scaffold121 WUBlastX LINE_L2 250952 251632 189 - . . scaffold121 WUBlastX LINE_CR1-L2 251000 251788 102 - . . scaffold121 WUBlastX LINE_RTE-BovB 261980 262285 172 - . . scaffold121 WUBlastX LINE_RTE-X 285983 286477 150 + . . scaffold121 WUBlastX LINE_Penelope 304347 305828 281 + . . scaffold121 WUBlastX LINE_L1 327470 327673 25 - . . scaffold121 WUBlastX LINE_L1-Tx1 327928 329469 257 - . . scaffold121 WUBlastX LINE_L1-Tx1 329475 329807 224 - . . scaffold121 WUBlastX LINE_L1-Tx1 329490 330029 186 - . . scaffold121 TRF Tandem_Repeat 331694 331735 77 + . . scaffold121 WUBlastX LINE_L1-Tx1 333265 334095 128 - . . scaffold121 WUBlastX LINE_L1-Tx1 333445 334098 274 - . . scaffold121 WUBlastX LINE_L1-Tx1 334050 335135 628 - . . scaffold121 WUBlastX LINE_L2 335642 336415 144 - . . scaffold121 WUBlastX LINE_L1 335828 336631 44 - . . scaffold121 WUBlastX LINE_L1-Tx1 337245 338666 307 - . . scaffold121 WUBlastX LINE_L1-Tx1 337836 338678 342 - . . scaffold121 WUBlastX LINE_L1-Tx1 338332 338808 71 - . . scaffold121 WUBlastX LINE_L1-Tx1 338843 339175 56 - . . scaffold121 WUBlastX LINE_L1 338918 339175 58 - . . scaffold121 WUBlastX LINE_L1-Tx1 339178 339369 113 - . . scaffold121 WUBlastX LINE_L1-Tx1 339181 339414 23 - . . scaffold121 GLEAN promoter 339939 340938 1 + . ID=CGI_10025642; scaffold121 GLEAN mRNA 339951 340439 0.999372 - . ID=CGI_10025641; scaffold121 GLEAN promoter 340440 341439 0.999372 - . ID=CGI_10025641; scaffold121 GLEAN mRNA 340939 341238 1 + . ID=CGI_10025642; scaffold121 TRF Tandem_Repeat 343779 343998 377 + . . scaffold121 TRF Tandem_Repeat 345296 345843 564 + . . scaffold121 TRF Tandem_Repeat 345296 346854 639 + . . scaffold121 TRF Tandem_Repeat 346078 346854 540 + . . scaffold121 GLEAN promoter 347264 348263 1 + . ID=CGI_10025643; scaffold121 GLEAN mRNA 348264 351438 1 + . ID=CGI_10025643; scaffold121 GLEAN mRNA 354873 363377 0.998475 - . ID=CGI_10025644; scaffold121 WUBlastX LINE_RTE-X 356213 356818 137 + . . scaffold121 GLEAN promoter 362883 363882 1 + . ID=CGI_10025645; scaffold121 GLEAN promoter 363378 364377 0.998475 - . ID=CGI_10025644; scaffold121 GLEAN mRNA 363883 377276 1 + . ID=CGI_10025645; scaffold121 TRF Tandem_Repeat 366366 366417 50 + . . scaffold121 TRF Tandem_Repeat 366368 366410 50 + . . scaffold121 TRF Tandem_Repeat 366422 367369 1304 + . . scaffold121 TRF Tandem_Repeat 375187 376246 1042 + . . scaffold121 GLEAN mRNA 380028 387350 0.448954 - . ID=CGI_10025646; scaffold121 GLEAN promoter 387351 388350 0.448954 - . ID=CGI_10025646; scaffold121 GLEAN promoter 387635 388634 0.999999 + . ID=CGI_10025647; scaffold121 GLEAN mRNA 388635 397895 0.999999 + . ID=CGI_10025647; scaffold121 GLEAN promoter 399010 400009 1 + . ID=CGI_10025648; scaffold121 GLEAN mRNA 400010 402564 1 + . ID=CGI_10025648; scaffold121 TRF Tandem_Repeat 403137 403324 100 + . . scaffold121 GLEAN promoter 405775 406774 0.754735 + . ID=CGI_10025649; scaffold121 TRF Tandem_Repeat 405868 405893 52 + . . scaffold121 GLEAN mRNA 406775 410471 0.754735 + . ID=CGI_10025649; scaffold121 GLEAN mRNA 413228 417955 0.677541 - . ID=CGI_10025650; scaffold121 TRF Tandem_Repeat 414478 414529 104 + . . scaffold121 TRF Tandem_Repeat 414997 415040 88 + . . scaffold121 GLEAN promoter 417956 418955 0.677541 - . ID=CGI_10025650; scaffold121 WUBlastX DNA_TcMar-Tc1 419327 419929 115 + . . scaffold121 WUBlastX DNA_TcMar-Tc1 419483 419929 249 + . . scaffold121 WUBlastX LINE_CR1-L2 420834 422573 808 + . . scaffold121 WUBlastX LINE_L2 423632 424063 128 + . . scaffold121 WUBlastX LINE_I 424487 424858 35 + . . scaffold121 WUBlastX LINE_L2 424556 427417 1297 + . . scaffold121 WUBlastX LINE_L2 427419 427721 125 + . . scaffold121 WUBlastX LINE_L1 443871 444224 36 + . . scaffold121 WUBlastX LINE_RTE-BovB 443925 444233 108 + . . scaffold121 WUBlastX LINE_RTE-BovB 443952 444401 108 + . . scaffold121 WUBlastX LINE_RTE-BovB 443997 444260 160 + . . scaffold121 WUBlastX LINE_RTE-BovB 444286 444600 86 + . . scaffold121 WUBlastX LINE_RTE-BovB 444461 445084 115 + . . scaffold121 WUBlastX LINE_RTE-BovB 444566 445084 216 + . . scaffold121 GLEAN mRNA 447290 448423 0.999661 - . ID=CGI_10025651; scaffold121 GLEAN promoter 448424 449423 0.999661 - . ID=CGI_10025651; scaffold121 TRF Tandem_Repeat 450962 451008 85 + . . scaffold121 TRF Tandem_Repeat 451358 451384 54 + . . scaffold121 TRF Tandem_Repeat 451879 451972 82 + . . scaffold121 WUBlastX LINE_RTE-X 452228 452380 47 + . . scaffold121 WUBlastX LINE_RTE-X 452261 452380 50 + . . scaffold121 WUBlastX LINE_RTE-X 452380 452856 114 + . . scaffold121 WUBlastX LINE_RTE-X 452464 453006 114 + . . scaffold121 WUBlastX LINE_L2 454463 454762 82 - . . scaffold121 WUBlastX LINE_CR1-L2 454463 454816 42 - . . scaffold121 WUBlastX LINE_CR1-L2 454800 454949 40 - . . scaffold121 WUBlastX LINE_CR1 454849 455238 90 - . . scaffold121 WUBlastX LINE_CR1-L2 454957 455241 194 - . . scaffold121 WUBlastX LINE_CR1-L2 455234 455971 230 - . . scaffold121 WUBlastX LINE_Jockey 455585 456115 134 - . . scaffold121 WUBlastX LINE_CR1-L2 455585 455971 285 - . . scaffold121 WUBlastX LINE_L2 456052 456171 20 - . . scaffold121 GLEAN mRNA 457559 465286 0.83602 - . ID=CGI_10025652; scaffold121 GLEAN promoter 465287 466286 0.83602 - . ID=CGI_10025652; scaffold121 GLEAN mRNA 468675 479610 0.999949 - . ID=CGI_10025653; scaffold121 TRF Tandem_Repeat 474603 474637 61 + . . scaffold121 GLEAN promoter 478867 479866 1 + . ID=CGI_10025654; scaffold121 GLEAN promoter 479611 480610 0.999949 - . ID=CGI_10025653; scaffold121 GLEAN mRNA 479867 484570 1 + . ID=CGI_10025654; scaffold121 GLEAN mRNA 485461 496821 0.999495 - . ID=CGI_10025655; scaffold121 TRF Tandem_Repeat 492355 492396 84 + . . scaffold121 GLEAN promoter 496822 497821 0.999495 - . ID=CGI_10025655; scaffold121 GLEAN mRNA 497036 504789 1 - . ID=CGI_10025656; scaffold121 TRF Tandem_Repeat 498854 498918 121 + . . scaffold121 TRF Tandem_Repeat 500372 500532 134 + . . scaffold121 TRF Tandem_Repeat 502734 502771 58 + . . scaffold121 GLEAN promoter 504790 505789 1 - . ID=CGI_10025656; scaffold121 GLEAN mRNA 504967 519244 0.995336 - . ID=CGI_10025657; scaffold121 TRF Tandem_Repeat 507570 507634 96 + . . scaffold121 TRF Tandem_Repeat 509583 509621 78 + . . scaffold121 WUBlastX LINE_L1 509649 510224 38 - . . scaffold121 WUBlastX LINE_L1-Tx1 509658 510074 97 - . . scaffold121 GLEAN promoter 518349 519348 1 + . ID=CGI_10025658; scaffold121 GLEAN promoter 519245 520244 0.995336 - . ID=CGI_10025657; scaffold121 GLEAN mRNA 519349 522570 1 + . ID=CGI_10025658; scaffold121 GLEAN promoter 524708 525707 1 + . ID=CGI_10025659; scaffold121 GLEAN mRNA 525708 528267 1 + . ID=CGI_10025659; scaffold121 GLEAN mRNA 530400 600279 0.993584 - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 542274 543324 1951 + . . scaffold121 TRF Tandem_Repeat 543497 543542 67 + . . scaffold121 TRF Tandem_Repeat 560717 560902 238 + . . scaffold121 TRF Tandem_Repeat 574581 574616 51 + . . scaffold121 TRF Tandem_Repeat 574581 574609 51 + . . scaffold121 TRF Tandem_Repeat 592734 592785 104 + . . scaffold121 GLEAN promoter 600280 601279 0.993584 - . ID=CGI_10025660; scaffold121 TRF Tandem_Repeat 601199 601241 77 + . . scaffold121 GLEAN promoter 601640 602639 0.999675 + . ID=CGI_10025661; scaffold121 GLEAN mRNA 602640 619411 0.999675 + . ID=CGI_10025661; scaffold121 GLEAN mRNA 606386 607297 1 - . ID=CGI_10025662; scaffold121 GLEAN promoter 607298 608297 1 - . ID=CGI_10025662; scaffold121 GLEAN mRNA 607929 610343 0.999998 - . ID=CGI_10025663; scaffold121 GLEAN promoter 610344 611343 0.999998 - . ID=CGI_10025663; scaffold121 TRF Tandem_Repeat 612471 613483 1139 + . . scaffold121 GLEAN mRNA 638296 643995 0.999907 - . ID=CGI_10025664; scaffold121 GLEAN promoter 643996 644995 0.999907 - . ID=CGI_10025664; scaffold121 TRF Tandem_Repeat 645765 646888 1745 + . . scaffold121 TRF Tandem_Repeat 646919 646978 75 + . . scaffold121 TRF Tandem_Repeat 649728 649781 108 + . . scaffold121 TRF Tandem_Repeat 651468 651492 50 + . . scaffold121 GLEAN promoter 657592 658591 0.835967 + . ID=CGI_10025665; scaffold121 GLEAN mRNA 658592 668536 0.835967 + . ID=CGI_10025665; scaffold121 GLEAN promoter 669402 670401 1 + . ID=CGI_10025666; scaffold121 GLEAN mRNA 670402 672593 1 + . ID=CGI_10025666; scaffold121 GLEAN mRNA 673572 677867 1 - . ID=CGI_10025667; scaffold121 GLEAN promoter 677868 678867 1 - . ID=CGI_10025667; scaffold121 GLEAN mRNA 678978 688001 0.999676 - . ID=CGI_10025668; scaffold121 GLEAN promoter 688002 689001 0.999676 - . ID=CGI_10025668; scaffold121 TRF Tandem_Repeat 688126 688165 80 + . . scaffold121 GLEAN promoter 689130 690129 1 + . ID=CGI_10025669; scaffold121 GLEAN mRNA 690130 693290 1 + . ID=CGI_10025669; scaffold121 GLEAN mRNA 698946 700040 1 - . ID=CGI_10025670; scaffold121 GLEAN promoter 700041 701040 1 - . ID=CGI_10025670; scaffold121 TRF Tandem_Repeat 700924 700992 138 + . . scaffold121 TRF Tandem_Repeat 701286 701334 98 + . . scaffold121 TRF Tandem_Repeat 702561 702623 108 + . . scaffold121 TRF Tandem_Repeat 703473 703537 123 + . . scaffold121 TRF Tandem_Repeat 703952 704020 138 + . . scaffold121 TRF Tandem_Repeat 704844 704891 96 + . . scaffold121 WUBlastX LINE_RTE-X 708256 708648 117 - . . scaffold121 WUBlastX LINE_RTE-X 708310 708726 106 - . . scaffold121 WUBlastX LINE_RTE-X 708852 709013 48 - . . scaffold121 WUBlastX LINE_RTE-X 708879 709013 95 - . . scaffold121 WUBlastX LINE_RTE-X 709013 709138 51 - . . scaffold121 WUBlastX LINE_RTE-X 709105 709461 167 - . . scaffold121 WUBlastX LINE_RTE-X 709129 709410 180 - . . scaffold121 WUBlastX LINE_RTE-X 715357 715860 75 + . . scaffold121 WUBlastX LINE_RTE-X 715847 715912 35 + . . scaffold121 TRF Tandem_Repeat 718114 722697 6591 + . . scaffold121 GLEAN mRNA 727921 733212 1 - . ID=CGI_10025671; scaffold121 GLEAN promoter 733213 734212 1 - . ID=CGI_10025671; scaffold121 TRF Tandem_Repeat 735729 735773 90 + . . scaffold121 GLEAN promoter 739135 740134 0.999366 + . ID=CGI_10025673; scaffold121 GLEAN mRNA 739987 742260 0.999676 - . ID=CGI_10025672; scaffold121 GLEAN mRNA 740135 754835 0.999366 + . ID=CGI_10025673; scaffold121 GLEAN promoter 742261 743260 0.999676 - . ID=CGI_10025672; scaffold121 GLEAN promoter 758054 759053 0.999351 + . ID=CGI_10025674; scaffold121 TRF Tandem_Repeat 758813 758845 66 + . . scaffold121 GLEAN mRNA 759054 781977 0.999351 + . ID=CGI_10025674; scaffold121 TRF Tandem_Repeat 764132 764264 236 + . . scaffold121 TRF Tandem_Repeat 764185 764284 56 + . . scaffold121 TRF Tandem_Repeat 764665 764704 80 + . . scaffold121 TRF Tandem_Repeat 767281 767535 395 + . . scaffold121 GLEAN mRNA 775844 776527 0.551465 - . ID=CGI_10025675; scaffold121 GLEAN promoter 776528 777527 0.551465 - . ID=CGI_10025675; scaffold121 GLEAN mRNA 788085 789404 0.996732 - . ID=CGI_10025676; scaffold121 GLEAN promoter 789405 790404 0.996732 - . ID=CGI_10025676; scaffold121 TRF Tandem_Repeat 793796 793854 109 + . . scaffold121 GLEAN mRNA 802405 806760 0.999375 - . ID=CGI_10025677; scaffold121 GLEAN promoter 806761 807760 0.999375 - . ID=CGI_10025677; scaffold121 TRF Tandem_Repeat 807589 808003 314 + . . scaffold121 TRF Tandem_Repeat 808294 808714 372 + . . scaffold121 TRF Tandem_Repeat 809568 810084 740 + . . scaffold121 TRF Tandem_Repeat 809568 810085 461 + . . scaffold121 TRF Tandem_Repeat 809701 809754 51 + . . scaffold121 WUBlastX LINE_L1 810940 811365 29 + . . scaffold121 WUBlastX LINE_RTE-BovB 811033 812457 383 + . . scaffold121 WUBlastX LINE_RTE-X 811741 812727 26 + . . scaffold121 GLEAN promoter 812447 813446 0.898543 + . ID=CGI_10025678; scaffold121 WUBlastX LINE_RTE-BovB 812736 812948 30 + . . scaffold121 WUBlastX LINE_RTE-BovB 812736 812906 52 + . . scaffold121 WUBlastX LINE_RTE-BovB 812810 812983 23 + . . scaffold121 GLEAN mRNA 813447 820875 0.898543 + . ID=CGI_10025678; scaffold121 TRF Tandem_Repeat 815893 815932 53 + . . scaffold121 GLEAN mRNA 825261 828670 1 - . ID=CGI_10025679; scaffold121 GLEAN promoter 828671 829670 1 - . ID=CGI_10025679; scaffold121 GLEAN mRNA 831625 843584 1 - . ID=CGI_10025680; scaffold121 TRF Tandem_Repeat 833799 833845 69 + . . scaffold121 GLEAN promoter 843585 844584 1 - . ID=CGI_10025680; scaffold121 GLEAN promoter 844059 845058 0.897497 + . ID=CGI_10025681; scaffold121 GLEAN mRNA 845059 873696 0.897497 + . ID=CGI_10025681; scaffold121 GLEAN promoter 872837 873836 0.999211 + . ID=CGI_10025682; scaffold121 WUBlastX LTR_Copia 873699 874085 26 + . . scaffold121 GLEAN mRNA 873837 879402 0.999211 + . ID=CGI_10025682; scaffold121 WUBlastX DNA_En-Spm 874287 874709 20 + . . scaffold121 GLEAN mRNA 883522 896790 0.942955 - . ID=CGI_10025683; scaffold121 TRF Tandem_Repeat 886977 887089 65 + . . scaffold121 TRF Tandem_Repeat 887051 887309 80 + . . scaffold121 TRF Tandem_Repeat 888101 888854 1070 + . . scaffold121 TRF Tandem_Repeat 888966 888991 52 + . . scaffold121 TRF Tandem_Repeat 893831 893872 84 + . . scaffold121 TRF Tandem_Repeat 894430 894703 295 + . . scaffold121 GLEAN promoter 896791 897790 0.942955 - . ID=CGI_10025683; scaffold121 GLEAN mRNA 897692 903721 0.940898 - . ID=CGI_10025684; scaffold121 GLEAN promoter 903722 904721 0.940898 - . ID=CGI_10025684; scaffold121 GLEAN mRNA 904036 921193 0.999676 - . ID=CGI_10025685; scaffold121 WUBlastX LINE_R2-Hero 909264 909503 61 + . . scaffold121 GLEAN promoter 921194 922193 0.999676 - . ID=CGI_10025685; scaffold121 GLEAN promoter 925125 926124 1 + . ID=CGI_10025686; scaffold121 GLEAN mRNA 926125 930749 1 + . ID=CGI_10025686; scaffold121 GLEAN promoter 937983 938982 0.995266 + . ID=CGI_10025687; scaffold121 TRF Tandem_Repeat 938437 938471 70 + . . scaffold121 GLEAN mRNA 938983 947821 0.995266 + . ID=CGI_10025687; scaffold121 GLEAN mRNA 949684 953631 0.777738 - . ID=CGI_10025688; scaffold121 GLEAN promoter 953632 954631 0.777738 - . ID=CGI_10025688; scaffold121 GLEAN mRNA 959061 977677 0.27118 - . ID=CGI_10025689; scaffold121 TRF Tandem_Repeat 965886 965938 106 + . . scaffold121 TRF Tandem_Repeat 965994 966033 80 + . . scaffold121 TRF Tandem_Repeat 974392 974447 112 + . . scaffold121 GLEAN promoter 977678 978677 0.27118 - . ID=CGI_10025689; scaffold121 GLEAN promoter 981809 982808 1 + . ID=CGI_10025690; scaffold121 GLEAN mRNA 982809 990227 1 + . ID=CGI_10025690; scaffold121 TRF Tandem_Repeat 982963 983011 89 + . . scaffold121 TRF Tandem_Repeat 985430 985490 113 + . . scaffold121 GLEAN mRNA 990650 992815 0.999633 - . ID=CGI_10025691; scaffold121 TRF Tandem_Repeat 990807 991014 254 + . . scaffold121 TRF Tandem_Repeat 990831 991014 262 + . . scaffold121 GLEAN promoter 992816 993815 0.999633 - . ID=CGI_10025691; scaffold121 GLEAN promoter 995680 996679 1 + . ID=CGI_10025692; scaffold121 GLEAN mRNA 996680 1005323 1 + . ID=CGI_10025692; scaffold121 GLEAN mRNA 1009079 1022115 0.292296 - . ID=CGI_10025693; scaffold121 GLEAN promoter 1020894 1021893 0.598054 + . ID=CGI_10025694; scaffold121 TRF Tandem_Repeat 1020972 1021021 50 + . . scaffold121 GLEAN mRNA 1021894 1047554 0.598054 + . ID=CGI_10025694; scaffold121 GLEAN promoter 1022116 1023115 0.292296 - . ID=CGI_10025693; scaffold121 TRF Tandem_Repeat 1046852 1046885 61 + . . scaffold121 TRF Tandem_Repeat 1052213 1052252 80 + . . scaffold121 GLEAN mRNA 1052699 1065187 0.997299 - . ID=CGI_10025695; scaffold121 TRF Tandem_Repeat 1054972 1055676 728 + . . scaffold121 TRF Tandem_Repeat 1064824 1064871 96 + . . scaffold121 GLEAN promoter 1065188 1066187 0.997299 - . ID=CGI_10025695; scaffold121 TRF Tandem_Repeat 1090024 1090091 136 + . . scaffold1210 GLEAN mRNA 962 11364 1 - . ID=CGI_10014591; scaffold1210 GLEAN promoter 11365 12364 1 - . ID=CGI_10014591; scaffold1210 GLEAN promoter 11387 12386 0.999206 + . ID=CGI_10014592; scaffold1210 GLEAN mRNA 12387 14252 0.999206 + . ID=CGI_10014592; scaffold1210 GLEAN promoter 22241 23240 0.800579 + . ID=CGI_10014593; scaffold1210 GLEAN mRNA 23241 25694 0.800579 + . ID=CGI_10014593; scaffold1210 TRF Tandem_Repeat 29056 29159 72 + . . scaffold1210 TRF Tandem_Repeat 30085 30270 169 + . . scaffold1210 TRF Tandem_Repeat 30270 30429 176 + . . scaffold1210 GLEAN mRNA 38525 41602 0.974323 - . ID=CGI_10014594; scaffold1210 GLEAN promoter 41603 42602 0.974323 - . ID=CGI_10014594; scaffold1210 TRF Tandem_Repeat 42868 42911 63 + . . scaffold1210 TRF Tandem_Repeat 42976 43065 162 + . . scaffold1210 GLEAN promoter 43473 44472 0.206684 + . ID=CGI_10014595; scaffold1210 GLEAN mRNA 44473 59431 0.206684 + . ID=CGI_10014595; scaffold1210 GLEAN mRNA 49071 52204 1 - . ID=CGI_10014596; scaffold1210 GLEAN promoter 52205 53204 1 - . ID=CGI_10014596; scaffold1210 GLEAN mRNA 56082 74938 0.728871 - . ID=CGI_10014597; scaffold1210 TRF Tandem_Repeat 68471 68511 82 + . . scaffold1210 TRF Tandem_Repeat 70223 70850 686 + . . scaffold1210 GLEAN promoter 74939 75938 0.728871 - . ID=CGI_10014597; scaffold1210 TRF Tandem_Repeat 81662 81728 118 + . . scaffold1210 TRF Tandem_Repeat 82655 82795 104 + . . scaffold1210 TRF Tandem_Repeat 83338 83373 72 + . . scaffold1210 GLEAN promoter 84018 85017 0.984006 + . ID=CGI_10014598; scaffold1210 GLEAN mRNA 85018 88577 0.984006 + . ID=CGI_10014598; scaffold1210 TRF Tandem_Repeat 88698 88739 50 + . . scaffold1210 TRF Tandem_Repeat 88912 89657 1190 + . . scaffold1210 GLEAN mRNA 93719 132019 0.550359 - . ID=CGI_10014599; scaffold1210 TRF Tandem_Repeat 100166 101252 1574 + . . scaffold1210 TRF Tandem_Repeat 101457 101494 58 + . . scaffold1210 WUBlastX LINE_RTE-X 112508 112852 73 + . . scaffold1210 WUBlastX LINE_RTE-X 112577 112903 76 + . . scaffold1210 TRF Tandem_Repeat 113033 113087 110 + . . scaffold1210 TRF Tandem_Repeat 115123 115271 87 + . . scaffold1210 GLEAN promoter 132020 133019 0.550359 - . ID=CGI_10014599; scaffold1210 GLEAN mRNA 132031 147551 0.544849 - . ID=CGI_10014600; scaffold1210 TRF Tandem_Repeat 134955 135003 98 + . . scaffold1210 GLEAN promoter 147552 148551 0.544849 - . ID=CGI_10014600; scaffold1210 TRF Tandem_Repeat 148726 148758 50 + . . scaffold1210 TRF Tandem_Repeat 154468 154599 68 + . . scaffold1210 TRF Tandem_Repeat 154619 154675 69 + . . scaffold1210 GLEAN mRNA 157915 165448 0.999351 - . ID=CGI_10014601; scaffold1210 GLEAN promoter 165449 166448 0.999351 - . ID=CGI_10014601; scaffold1210 GLEAN mRNA 167606 180231 0.844003 - . ID=CGI_10014602; scaffold1210 GLEAN promoter 179478 180477 1 + . ID=CGI_10014603; scaffold1210 GLEAN promoter 180232 181231 0.844003 - . ID=CGI_10014602; scaffold1210 GLEAN mRNA 180478 186460 1 + . ID=CGI_10014603; scaffold1210 TRF Tandem_Repeat 183070 183185 160 + . . scaffold1210 GLEAN mRNA 190967 207769 0.788033 - . ID=CGI_10014604; scaffold1210 GLEAN promoter 207770 208769 0.788033 - . ID=CGI_10014604; scaffold1210 WUBlastX DNA_hAT-Blackja 216656 216925 56 - . . scaffold1210 WUBlastX DNA_hAT-Tip100 216914 217060 53 - . . scaffold1210 WUBlastX LINE_RTE-X 219355 219813 57 - . . scaffold1210 WUBlastX LINE_RTE-X 219442 219786 84 - . . scaffold1210 WUBlastX LINE_RTE-X 219806 220126 33 - . . scaffold1210 GLEAN mRNA 219854 220240 0.999999 - . ID=CGI_10014605; scaffold1210 WUBlastX LINE_RTE-X 219866 220099 48 - . . scaffold1210 WUBlastX LINE_RTE-X 219902 222376 438 - . . scaffold1210 GLEAN promoter 220241 221240 0.999999 - . ID=CGI_10014605; scaffold1210 WUBlastX LINE_RTE-X 220601 222988 813 - . . scaffold1210 GLEAN promoter 222162 223161 0.996444 + . ID=CGI_10014606; scaffold1210 WUBlastX LINE_CR1 222530 223129 36 - . . scaffold1210 WUBlastX LINE_CR1 223121 223240 27 - . . scaffold1210 GLEAN mRNA 223162 227015 0.996444 + . ID=CGI_10014606; scaffold1210 TRF Tandem_Repeat 225913 225966 99 + . . scaffold1210 TRF Tandem_Repeat 230286 230339 108 + . . scaffold1210 TRF Tandem_Repeat 234762 235026 115 + . . scaffold1210 TRF Tandem_Repeat 240167 240198 64 + . . scaffold1210 TRF Tandem_Repeat 241678 241727 50 + . . scaffold1210 TRF Tandem_Repeat 241773 241828 112 + . . scaffold1210 WUBlastX DNA_Academ 242421 242981 329 - . . scaffold1210 WUBlastX DNA_Academ 242430 243083 85 - . . scaffold1210 GLEAN mRNA 242968 243372 0.866433 - . ID=CGI_10014607; scaffold1210 WUBlastX DNA_Academ 243034 243171 40 - . . scaffold1210 WUBlastX DNA_Academ 243193 243753 207 - . . scaffold1210 GLEAN promoter 243373 244372 0.866433 - . ID=CGI_10014607; scaffold1210 GLEAN mRNA 244608 247795 0.999991 - . ID=CGI_10014608; scaffold1210 GLEAN promoter 247796 248795 0.999991 - . ID=CGI_10014608; scaffold1210 TRF Tandem_Repeat 255598 255688 157 + . . scaffold1210 GLEAN mRNA 263491 263676 0.956063 - . ID=CGI_10014609; scaffold1210 GLEAN promoter 263677 264676 0.956063 - . ID=CGI_10014609; scaffold1210 GLEAN promoter 284896 285895 0.325296 + . ID=CGI_10014610; scaffold1210 GLEAN mRNA 285896 306998 0.325296 + . ID=CGI_10014610; scaffold1210 WUBlastX DNA_hAT-Ac 293871 294242 72 + . . scaffold1210 WUBlastX DNA_hAT-Ac 293877 294188 93 + . . scaffold1210 TRF Tandem_Repeat 299844 299908 121 + . . scaffold1210 TRF Tandem_Repeat 313152 313197 85 + . . scaffold1210 TRF Tandem_Repeat 314329 314353 50 + . . scaffold1210 GLEAN promoter 315271 316270 0.993486 + . ID=CGI_10014611; scaffold1210 TRF Tandem_Repeat 315374 315408 70 + . . scaffold1210 GLEAN mRNA 316271 318136 0.993486 + . ID=CGI_10014611; scaffold1210 TRF Tandem_Repeat 318178 318232 110 + . . scaffold1210 TRF Tandem_Repeat 322955 323037 166 + . . scaffold1210 GLEAN promoter 324722 325721 0.999939 + . ID=CGI_10014612; scaffold1210 GLEAN mRNA 325722 335187 0.999939 + . ID=CGI_10014612; scaffold1210 TRF Tandem_Repeat 334981 335047 125 + . . scaffold1210 TRF Tandem_Repeat 339427 339477 93 + . . scaffold1210 TRF Tandem_Repeat 342528 342592 94 + . . scaffold1210 GLEAN promoter 345063 346062 0.882739 + . ID=CGI_10014613; scaffold1210 GLEAN mRNA 346063 360782 0.882739 + . ID=CGI_10014613; scaffold1210 TRF Tandem_Repeat 346666 346709 88 + . . scaffold1210 TRF Tandem_Repeat 346675 346735 59 + . . scaffold1210 TRF Tandem_Repeat 348039 348115 106 + . . scaffold1210 TRF Tandem_Repeat 362045 362112 136 + . . scaffold1210 GLEAN mRNA 364568 364807 1 - . ID=CGI_10014614; scaffold1210 GLEAN promoter 364808 365807 1 - . ID=CGI_10014614; scaffold1210 TRF Tandem_Repeat 366752 366816 130 + . . scaffold1210 TRF Tandem_Repeat 366936 366968 66 + . . scaffold1210 TRF Tandem_Repeat 367602 367638 74 + . . scaffold1210 TRF Tandem_Repeat 367693 367750 116 + . . scaffold1210 GLEAN promoter 369621 370620 0.277057 + . ID=CGI_10014615; scaffold1210 GLEAN mRNA 370621 393623 0.277057 + . ID=CGI_10014615; scaffold1210 TRF Tandem_Repeat 372753 372797 81 + . . scaffold1210 TRF Tandem_Repeat 379406 380076 983 + . . scaffold1210 TRF Tandem_Repeat 385838 385913 116 + . . scaffold1210 WUBlastX DNA_Kolobok 400875 401114 46 + . . scaffold1210 WUBlastX DNA_Kolobok 400932 401126 63 + . . scaffold1210 WUBlastX DNA_Kolobok 401319 401399 33 - . . scaffold1210 WUBlastX DNA_Kolobok 401614 401721 60 - . . scaffold1210 WUBlastX DNA_Kolobok 401814 401951 74 - . . scaffold1210 WUBlastX DNA_Kolobok 401993 402343 127 - . . scaffold1210 WUBlastX DNA_Kolobok 402525 402713 120 - . . scaffold1210 WUBlastX DNA_Kolobok 402811 402963 64 - . . scaffold1212 GLEAN promoter 692 1691 0.698935 + . ID=CGI_10005202; scaffold1212 GLEAN mRNA 1480 1671 1 - . ID=CGI_10005201; scaffold1212 GLEAN promoter 1672 2671 1 - . ID=CGI_10005201; scaffold1212 GLEAN mRNA 1692 57399 0.698935 + . ID=CGI_10005202; scaffold1212 GLEAN mRNA 36383 36727 0.618241 - . ID=CGI_10005203; scaffold1212 GLEAN promoter 36728 37727 0.618241 - . ID=CGI_10005203; scaffold1212 GLEAN mRNA 36910 37236 0.999372 - . ID=CGI_10005204; scaffold1212 GLEAN promoter 37237 38236 0.999372 - . ID=CGI_10005204; scaffold1212 GLEAN mRNA 58228 86948 0.934039 - . ID=CGI_10005205; scaffold1212 GLEAN promoter 85230 86229 0.889923 + . ID=CGI_10005206; scaffold1212 GLEAN mRNA 86230 88565 0.889923 + . ID=CGI_10005206; scaffold1212 GLEAN promoter 86949 87948 0.934039 - . ID=CGI_10005205; scaffold1212 GLEAN mRNA 92144 93282 1 - . ID=CGI_10005207; scaffold1212 GLEAN promoter 92650 93649 0.922671 + . ID=CGI_10005208; scaffold1212 GLEAN promoter 93283 94282 1 - . ID=CGI_10005207; scaffold1212 GLEAN mRNA 93650 99628 0.922671 + . ID=CGI_10005208; scaffold1212 GLEAN promoter 109465 110464 0.992217 + . ID=CGI_10005209; scaffold1212 GLEAN mRNA 110465 118984 0.992217 + . ID=CGI_10005209; scaffold1213 WUBlastX LINE_Penelope 15003 15491 49 - . . scaffold1213 WUBlastX DNA_Crypton 27045 27257 55 + . . scaffold1213 TRF Tandem_Repeat 28859 28957 58 + . . scaffold1213 GLEAN mRNA 31253 33771 1 - . ID=CGI_10027425; scaffold1213 GLEAN promoter 33772 34771 1 - . ID=CGI_10027425; scaffold1213 GLEAN mRNA 37787 69926 0.920174 - . ID=CGI_10027426; scaffold1213 TRF Tandem_Repeat 46485 46732 319 + . . scaffold1213 TRF Tandem_Repeat 47915 47952 76 + . . scaffold1213 WUBlastX LINE_RTE-X 51920 52234 31 + . . scaffold1213 WUBlastX LINE_RTE-X 52040 52255 60 + . . scaffold1213 TRF Tandem_Repeat 52284 52343 57 + . . scaffold1213 TRF Tandem_Repeat 58311 58376 123 + . . scaffold1213 TRF Tandem_Repeat 67497 67557 122 + . . scaffold1213 GLEAN promoter 69927 70926 0.920174 - . ID=CGI_10027426; scaffold1213 TRF Tandem_Repeat 74518 74551 68 + . . scaffold1213 TRF Tandem_Repeat 81917 81969 106 + . . scaffold1213 TRF Tandem_Repeat 85783 86687 1503 + . . scaffold1213 GLEAN mRNA 88132 91732 0.999648 - . ID=CGI_10027427; scaffold1213 GLEAN promoter 91733 92732 0.999648 - . ID=CGI_10027427; scaffold1213 WUBlastX LINE_L1-Tx1 102953 103111 28 + . . scaffold1213 WUBlastX LINE_L1-Tx1 103563 103793 25 + . . scaffold1213 WUBlastX LINE_L1-Tx1 103599 103913 39 + . . scaffold1213 WUBlastX LINE_L1-Tx1 104021 104518 109 + . . scaffold1213 WUBlastX LINE_L1-Tx1 104108 104584 141 + . . scaffold1213 GLEAN promoter 104411 105410 0.993359 + . ID=CGI_10027429; scaffold1213 TRF Tandem_Repeat 104628 104665 53 + . . scaffold1213 GLEAN mRNA 105397 107857 1 - . ID=CGI_10027428; scaffold1213 GLEAN mRNA 105411 106127 0.993359 + . ID=CGI_10027429; scaffold1213 GLEAN promoter 107858 108857 1 - . ID=CGI_10027428; scaffold1213 TRF Tandem_Repeat 109002 109911 1101 + . . scaffold1213 TRF Tandem_Repeat 109106 109911 1103 + . . scaffold1213 TRF Tandem_Repeat 111187 112096 1101 + . . scaffold1213 TRF Tandem_Repeat 111291 112096 1103 + . . scaffold1213 GLEAN mRNA 113687 116909 1 - . ID=CGI_10027430; scaffold1213 GLEAN promoter 116910 117909 1 - . ID=CGI_10027430; scaffold1213 GLEAN mRNA 119342 120553 0.809137 - . ID=CGI_10027431; scaffold1213 GLEAN promoter 120554 121553 0.809137 - . ID=CGI_10027431; scaffold1213 GLEAN mRNA 121444 128866 0.995665 - . ID=CGI_10027432; scaffold1213 GLEAN promoter 128867 129866 0.995665 - . ID=CGI_10027432; scaffold1213 GLEAN promoter 131882 132881 0.985103 + . ID=CGI_10027435; scaffold1213 TRF Tandem_Repeat 132777 132821 90 + . . scaffold1213 GLEAN mRNA 132882 133034 0.985103 + . ID=CGI_10027435; scaffold1213 GLEAN mRNA 134630 144538 0.999956 - . ID=CGI_10027436; scaffold1213 GLEAN promoter 144278 145277 1 + . ID=CGI_10027437; scaffold1213 GLEAN promoter 144539 145538 0.999956 - . ID=CGI_10027436; scaffold1213 GLEAN mRNA 145278 150376 1 + . ID=CGI_10027437; scaffold1213 TRF Tandem_Repeat 148862 149142 284 + . . scaffold1213 TRF Tandem_Repeat 149439 149703 253 + . . scaffold1213 TRF Tandem_Repeat 152935 153179 189 + . . scaffold1213 WUBlastX LINE_L2 156645 159512 1597 - . . scaffold1213 GLEAN mRNA 160892 169803 0.999676 - . ID=CGI_10027438; scaffold1213 TRF Tandem_Repeat 162243 163028 804 + . . scaffold1213 TRF Tandem_Repeat 166322 167799 1369 + . . scaffold1213 GLEAN promoter 169804 170803 0.999676 - . ID=CGI_10027438; scaffold1213 GLEAN mRNA 172328 179031 1 - . ID=CGI_10027439; scaffold1213 WUBlastX LINE_RTE-X 177133 178281 308 - . . scaffold1213 GLEAN promoter 179032 180031 1 - . ID=CGI_10027439; scaffold1213 TRF Tandem_Repeat 180576 180614 78 + . . scaffold1213 GLEAN promoter 181433 182432 0.999949 + . ID=CGI_10027440; scaffold1213 GLEAN mRNA 182433 225694 0.999949 + . ID=CGI_10027440; scaffold1213 TRF Tandem_Repeat 195758 195820 126 + . . scaffold1213 GLEAN promoter 225891 226890 0.989794 + . ID=CGI_10027441; scaffold1213 GLEAN mRNA 226891 261241 0.989794 + . ID=CGI_10027441; scaffold1213 TRF Tandem_Repeat 228816 228862 94 + . . scaffold1213 GLEAN mRNA 239564 249269 0.913393 - . ID=CGI_10027442; scaffold1213 GLEAN promoter 249270 250269 0.913393 - . ID=CGI_10027442; scaffold1213 WUBlastX DNA_TcMar-Tc1 250202 250678 117 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 250226 250603 127 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 250932 251288 74 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 251076 251294 94 - . . scaffold1213 GLEAN promoter 262941 263940 0.999998 + . ID=CGI_10027443; scaffold1213 TRF Tandem_Repeat 263128 263196 104 + . . scaffold1213 GLEAN mRNA 263941 272435 0.999998 + . ID=CGI_10027443; scaffold1213 GLEAN promoter 272723 273722 0.991197 + . ID=CGI_10027444; scaffold1213 GLEAN mRNA 273723 276285 0.991197 + . ID=CGI_10027444; scaffold1213 GLEAN promoter 275377 276376 0.999969 + . ID=CGI_10027445; scaffold1213 GLEAN mRNA 276377 281785 0.999969 + . ID=CGI_10027445; scaffold1213 GLEAN promoter 285619 286618 0.999969 + . ID=CGI_10027446; scaffold1213 GLEAN mRNA 286619 288144 0.999969 + . ID=CGI_10027446; scaffold1213 GLEAN promoter 289229 290228 0.999743 + . ID=CGI_10027447; scaffold1213 GLEAN mRNA 290229 295085 0.999743 + . ID=CGI_10027447; scaffold1213 TRF Tandem_Repeat 290595 290964 573 + . . scaffold1213 TRF Tandem_Repeat 293920 294692 766 + . . scaffold1213 GLEAN mRNA 294951 322031 0.991507 - . ID=CGI_10027448; scaffold1213 TRF Tandem_Repeat 300613 300661 62 + . . scaffold1213 TRF Tandem_Repeat 317081 317109 58 + . . scaffold1213 TRF Tandem_Repeat 321512 321537 52 + . . scaffold1213 GLEAN promoter 322032 323031 0.991507 - . ID=CGI_10027448; scaffold1213 TRF Tandem_Repeat 322717 322741 50 + . . scaffold1213 TRF Tandem_Repeat 322743 322786 88 + . . scaffold1213 WUBlastX DNA_PiggyBac 328424 328942 165 - . . scaffold1213 WUBlastX DNA_PiggyBac 328475 328867 182 - . . scaffold1213 TRF Tandem_Repeat 334301 334348 96 + . . scaffold1213 TRF Tandem_Repeat 335150 335207 116 + . . scaffold1213 TRF Tandem_Repeat 339264 339899 708 + . . scaffold1213 TRF Tandem_Repeat 339271 339899 815 + . . scaffold1213 TRF Tandem_Repeat 342704 342757 81 + . . scaffold1213 TRF Tandem_Repeat 342781 343896 1596 + . . scaffold1213 TRF Tandem_Repeat 346310 346345 54 + . . scaffold1213 TRF Tandem_Repeat 346546 347378 1118 + . . scaffold1213 GLEAN promoter 349181 350180 0.805895 + . ID=CGI_10027449; scaffold1213 GLEAN mRNA 350181 406483 0.805895 + . ID=CGI_10027449; scaffold1213 TRF Tandem_Repeat 357168 357221 55 + . . scaffold1213 WUBlastX DNA_hAT-Tip100 358434 358847 52 + . . scaffold1213 WUBlastX DNA_hAT-Tip100 358789 358974 30 + . . scaffold1213 WUBlastX DNA_hAT-Tip100 359063 359497 68 + . . scaffold1213 WUBlastX DNA_hAT-Tip100 359156 359491 111 + . . scaffold1213 WUBlastX DNA_hAT-Tip100 359234 359497 113 + . . scaffold1213 WUBlastX DNA_hAT-Tip100 359264 359563 81 + . . scaffold1213 TRF Tandem_Repeat 363257 363291 61 + . . scaffold1213 WUBlastX DNA_TcMar-Pogo 386626 388137 792 + . . scaffold1213 TRF Tandem_Repeat 390158 390189 64 + . . scaffold1213 TRF Tandem_Repeat 396458 396483 52 + . . scaffold1213 TRF Tandem_Repeat 400246 401436 1346 + . . scaffold1213 TRF Tandem_Repeat 402802 403761 1336 + . . scaffold1213 GLEAN mRNA 408300 423198 0.400191 - . ID=CGI_10027450; scaffold1213 TRF Tandem_Repeat 409673 410256 406 + . . scaffold1213 TRF Tandem_Repeat 409675 410233 565 + . . scaffold1213 TRF Tandem_Repeat 409675 410233 565 + . . scaffold1213 TRF Tandem_Repeat 412325 413227 1108 + . . scaffold1213 WUBlastX LINE_L1 414700 415176 92 - . . scaffold1213 WUBlastX LINE_L1-Tx1 414781 415176 209 - . . scaffold1213 WUBlastX LINE_L1-Tx1 414832 415284 170 - . . scaffold1213 TRF Tandem_Repeat 415568 416358 938 + . . scaffold1213 WUBlastX LINE_L1-Tx1 416599 417627 343 - . . scaffold1213 WUBlastX LINE_L1-Tx1 417654 418061 101 - . . scaffold1213 WUBlastX LINE_L1-Tx1 419237 419452 83 - . . scaffold1213 WUBlastX LINE_L1 419303 419503 76 - . . scaffold1213 WUBlastX LINE_L1-Tx1 419988 420200 92 + . . scaffold1213 WUBlastX LINE_L1-Tx1 420024 420203 117 + . . scaffold1213 WUBlastX LINE_L1-Tx1 420212 420832 211 + . . scaffold1213 WUBlastX LINE_L1-Tx1 420221 420949 207 + . . scaffold1213 WUBlastX LINE_L1-Tx1 420939 421763 37 + . . scaffold1213 GLEAN promoter 423199 424198 0.400191 - . ID=CGI_10027450; scaffold1213 WUBlastX LINE_L1-Tx1 436344 436733 90 - . . scaffold1213 WUBlastX LINE_L1-Tx1 436350 436676 200 - . . scaffold1213 GLEAN mRNA 436828 438219 0.982039 - . ID=CGI_10027451; scaffold1213 WUBlastX LINE_L1-Tx1 437581 438201 188 - . . scaffold1213 GLEAN promoter 438220 439219 0.982039 - . ID=CGI_10027451; scaffold1213 WUBlastX DNA_TcMar-Marin 439195 439911 77 + . . scaffold1213 WUBlastX DNA_TcMar-Marin 439207 439725 107 + . . scaffold1213 WUBlastX DNA_TcMar-Marin 439219 440163 66 + . . scaffold1213 TRF Tandem_Repeat 454640 454707 136 + . . scaffold1213 WUBlastX DNA_Kolobok 455799 456263 106 - . . scaffold1213 WUBlastX DNA_Kolobok 455799 456176 165 - . . scaffold1213 TRF Tandem_Repeat 456806 457506 826 + . . scaffold1213 TRF Tandem_Repeat 461743 461816 148 + . . scaffold1213 TRF Tandem_Repeat 463211 463621 174 + . . scaffold1213 TRF Tandem_Repeat 463583 463667 72 + . . scaffold1213 TRF Tandem_Repeat 463859 463975 69 + . . scaffold1213 WUBlastX DNA_TcMar-Tc1 464851 465018 28 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465008 465139 59 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465020 465193 34 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465199 465282 33 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465411 465524 33 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465441 465527 37 - . . scaffold1213 WUBlastX DNA_TcMar-Tc1 465468 465551 35 - . . scaffold1213 WUBlastX DNA_IS4EU 492649 492963 112 - . . scaffold1213 TRF Tandem_Repeat 495666 497601 1649 + . . scaffold1213 TRF Tandem_Repeat 500750 500818 79 + . . scaffold1213 TRF Tandem_Repeat 501095 501137 68 + . . scaffold1213 GLEAN mRNA 510520 516637 0.650969 - . ID=CGI_10027452; scaffold1213 TRF Tandem_Repeat 510923 510951 58 + . . scaffold1213 TRF Tandem_Repeat 512170 512205 54 + . . scaffold1213 GLEAN promoter 516638 517637 0.650969 - . ID=CGI_10027452; scaffold1213 TRF Tandem_Repeat 535388 536031 755 + . . scaffold1213 TRF Tandem_Repeat 535398 536032 669 + . . scaffold1213 TRF Tandem_Repeat 535650 536032 314 + . . scaffold1213 GLEAN mRNA 541578 546950 0.733271 - . ID=CGI_10027453; scaffold1213 WUBlastX LTR_Gypsy 545652 546341 104 - . . scaffold1213 GLEAN promoter 546951 547950 0.733271 - . ID=CGI_10027453; scaffold1213 TRF Tandem_Repeat 551710 551734 50 + . . scaffold1213 GLEAN mRNA 553097 569652 0.798762 - . ID=CGI_10027454; scaffold1213 TRF Tandem_Repeat 554099 554386 576 + . . scaffold1213 TRF Tandem_Repeat 568022 568064 86 + . . scaffold1213 GLEAN promoter 569653 570652 0.798762 - . ID=CGI_10027454; scaffold1213 GLEAN mRNA 574801 576263 0.999321 - . ID=CGI_10027455; scaffold1213 GLEAN promoter 576264 577263 0.999321 - . ID=CGI_10027455; scaffold1213 GLEAN mRNA 576383 577070 0.998665 - . ID=CGI_10027456; scaffold1213 GLEAN promoter 577071 578070 0.998665 - . ID=CGI_10027456; scaffold1213 TRF Tandem_Repeat 619506 619536 53 + . . scaffold1213 WUBlastX LINE_RTE-X 631705 632268 64 - . . scaffold1213 WUBlastX LINE_RTE-X 631750 632085 153 - . . scaffold1213 WUBlastX LINE_RTE-BovB 631831 632199 73 - . . scaffold1213 GLEAN mRNA 632817 642352 0.510232 - . ID=CGI_10027457; scaffold1213 TRF Tandem_Repeat 641924 641977 58 + . . scaffold1213 GLEAN promoter 642353 643352 0.510232 - . ID=CGI_10027457; scaffold1213 TRF Tandem_Repeat 642839 642890 104 + . . scaffold1213 GLEAN promoter 643703 644702 1 + . ID=CGI_10027458; scaffold1213 GLEAN mRNA 644703 647145 1 + . ID=CGI_10027458; scaffold1213 GLEAN mRNA 649076 655549 0.619049 - . ID=CGI_10027459; scaffold1213 GLEAN promoter 655189 656188 0.999666 + . ID=CGI_10027460; scaffold1213 GLEAN promoter 655550 656549 0.619049 - . ID=CGI_10027459; scaffold1213 GLEAN mRNA 656189 657391 0.999666 + . ID=CGI_10027460; scaffold1213 GLEAN mRNA 659525 674092 0.331119 - . ID=CGI_10027461; scaffold1213 WUBlastX DNA_Transib 669104 669283 58 - . . scaffold1213 GLEAN promoter 674093 675092 0.331119 - . ID=CGI_10027461; scaffold1213 WUBlastX LINE_Rex-Babar 675135 675422 27 + . . scaffold1213 WUBlastX LINE_RTE-X 675255 675728 165 + . . scaffold1213 WUBlastX LINE_RTE-X 675542 676294 195 + . . scaffold1213 WUBlastX LINE_RTE-X 676320 676523 66 + . . scaffold1213 WUBlastX LINE_RTE-X 676356 676523 83 + . . scaffold1213 WUBlastX LINE_RTE-X 676356 676553 50 + . . scaffold1213 TRF Tandem_Repeat 678326 678389 128 + . . scaffold1213 TRF Tandem_Repeat 678807 678841 61 + . . scaffold1213 GLEAN promoter 679911 680910 1 + . ID=CGI_10027462; scaffold1213 GLEAN mRNA 680911 681864 1 + . ID=CGI_10027462; scaffold1213 TRF Tandem_Repeat 681261 681317 114 + . . scaffold1213 GLEAN promoter 686189 687188 1 + . ID=CGI_10027463; scaffold1213 GLEAN mRNA 687189 703423 1 + . ID=CGI_10027463; scaffold1213 TRF Tandem_Repeat 697184 697236 99 + . . scaffold1213 GLEAN mRNA 705866 725571 0.80624 - . ID=CGI_10027464; scaffold1213 TRF Tandem_Repeat 712847 712894 60 + . . scaffold1213 TRF Tandem_Repeat 723337 723654 297 + . . scaffold1213 GLEAN promoter 725572 726571 0.80624 - . ID=CGI_10027464; scaffold1213 TRF Tandem_Repeat 725935 725974 80 + . . scaffold1213 TRF Tandem_Repeat 727044 727086 86 + . . scaffold1213 GLEAN promoter 748933 749932 0.947537 + . ID=CGI_10027465; scaffold1213 GLEAN mRNA 749933 754884 0.947537 + . ID=CGI_10027465; scaffold1213 GLEAN promoter 754285 755284 0.946675 + . ID=CGI_10027466; scaffold1213 GLEAN mRNA 755285 774056 0.946675 + . ID=CGI_10027466; scaffold1213 TRF Tandem_Repeat 757339 757375 58 + . . scaffold1213 GLEAN promoter 774143 775142 0.999915 + . ID=CGI_10027467; scaffold1213 GLEAN mRNA 775143 780365 0.999915 + . ID=CGI_10027467; scaffold1213 TRF Tandem_Repeat 779329 779388 120 + . . scaffold1213 GLEAN promoter 785921 786920 0.884092 + . ID=CGI_10027468; scaffold1213 GLEAN mRNA 786921 789171 0.884092 + . ID=CGI_10027468; scaffold1213 GLEAN promoter 793510 794509 0.99952 + . ID=CGI_10027469; scaffold1213 GLEAN mRNA 794510 802778 0.99952 + . ID=CGI_10027469; scaffold1213 TRF Tandem_Repeat 796594 796669 111 + . . scaffold1213 GLEAN promoter 803489 804488 0.999828 + . ID=CGI_10027470; scaffold1213 GLEAN mRNA 804489 809696 0.999828 + . ID=CGI_10027470; scaffold1213 TRF Tandem_Repeat 805744 805808 96 + . . scaffold1213 GLEAN mRNA 811049 815477 1 - . ID=CGI_10027471; scaffold1213 GLEAN promoter 815478 816477 1 - . ID=CGI_10027471; scaffold1213 TRF Tandem_Repeat 827187 827247 122 + . . scaffold1213 GLEAN promoter 833033 834032 0.999981 + . ID=CGI_10027472; scaffold1213 GLEAN mRNA 834033 835723 0.999981 + . ID=CGI_10027472; scaffold1213 TRF Tandem_Repeat 863646 863866 117 + . . scaffold1213 TRF Tandem_Repeat 864749 866377 1724 + . . scaffold1213 TRF Tandem_Repeat 866588 866775 129 + . . scaffold1213 TRF Tandem_Repeat 866593 867181 205 + . . scaffold1213 TRF Tandem_Repeat 866958 867169 257 + . . scaffold1213 TRF Tandem_Repeat 867600 867712 154 + . . scaffold1213 TRF Tandem_Repeat 871358 871394 74 + . . scaffold1213 TRF Tandem_Repeat 871394 871421 56 + . . scaffold1213 TRF Tandem_Repeat 875638 875706 138 + . . scaffold1213 GLEAN promoter 875882 876881 0.998571 + . ID=CGI_10027473; scaffold1213 GLEAN mRNA 876882 878035 0.998571 + . ID=CGI_10027473; scaffold1213 GLEAN promoter 877040 878039 0.557335 + . ID=CGI_10027474; scaffold1213 GLEAN mRNA 878040 886398 0.557335 + . ID=CGI_10027474; scaffold1213 TRF Tandem_Repeat 888904 889701 1317 + . . scaffold1213 TRF Tandem_Repeat 889710 889778 84 + . . scaffold1213 WUBlastX LTR_DIRS 910485 911105 152 - . . scaffold1213 WUBlastX LTR_DIRS 910555 910845 169 - . . scaffold1213 WUBlastX LTR_DIRS 911102 911698 183 - . . scaffold1213 TRF Tandem_Repeat 917970 917998 58 + . . scaffold1213 WUBlastX LINE_L1-Tx1 924809 925246 76 + . . scaffold1213 WUBlastX LINE_L1 925399 925809 66 + . . scaffold1213 WUBlastX LINE_L1-Tx1 925462 925803 108 + . . scaffold1213 WUBlastX LINE_L1-Tx1 925465 925917 54 + . . scaffold1213 TRF Tandem_Repeat 926957 927012 112 + . . scaffold1213 TRF Tandem_Repeat 933095 933218 119 + . . scaffold1213 TRF Tandem_Repeat 933362 933449 122 + . . scaffold1213 GLEAN mRNA 937186 938459 1 - . ID=CGI_10027475; scaffold1213 GLEAN promoter 938460 939459 1 - . ID=CGI_10027475; scaffold1213 GLEAN mRNA 943254 943643 0.998816 - . ID=CGI_10027476; scaffold1213 GLEAN promoter 943644 944643 0.998816 - . ID=CGI_10027476; scaffold1213 TRF Tandem_Repeat 943755 943786 64 + . . scaffold1213 GLEAN mRNA 946222 964411 0.518885 - . ID=CGI_10027477; scaffold1213 TRF Tandem_Repeat 958332 958452 224 + . . scaffold1213 TRF Tandem_Repeat 958558 958696 113 + . . scaffold1213 GLEAN promoter 961661 962660 0.766143 + . ID=CGI_10027478; scaffold1213 GLEAN mRNA 962661 992482 0.766143 + . ID=CGI_10027478; scaffold1213 GLEAN promoter 964412 965411 0.518885 - . ID=CGI_10027477; scaffold1213 TRF Tandem_Repeat 983523 983585 126 + . . scaffold1213 TRF Tandem_Repeat 986507 986568 124 + . . scaffold1213 GLEAN mRNA 996794 1000495 1 - . ID=CGI_10027479; scaffold1213 GLEAN promoter 1000496 1001495 1 - . ID=CGI_10027479; scaffold1213 GLEAN mRNA 1001677 1005339 0.999375 - . ID=CGI_10027480; scaffold1213 GLEAN promoter 1005340 1006339 0.999375 - . ID=CGI_10027480; scaffold1213 TRF Tandem_Repeat 1008074 1008807 690 + . . scaffold1213 TRF Tandem_Repeat 1009750 1009836 54 + . . scaffold1213 TRF Tandem_Repeat 1027628 1027686 100 + . . scaffold1213 TRF Tandem_Repeat 1032179 1032506 393 + . . scaffold1213 GLEAN promoter 1033604 1034603 1 + . ID=CGI_10027481; scaffold1213 GLEAN mRNA 1034604 1037320 1 + . ID=CGI_10027481; scaffold1213 TRF Tandem_Repeat 1039535 1039656 106 + . . scaffold1213 WUBlastX LINE_L2 1040007 1040159 28 - . . scaffold1213 WUBlastX LINE_L2 1040300 1040680 40 - . . scaffold1213 WUBlastX LINE_CR1-L2 1040381 1040659 59 - . . scaffold1213 GLEAN mRNA 1041638 1052846 0.999344 - . ID=CGI_10027482; scaffold1213 GLEAN promoter 1052847 1053846 0.999344 - . ID=CGI_10027482; scaffold1213 TRF Tandem_Repeat 1056651 1056811 322 + . . scaffold1213 WUBlastX LINE_RTE-X 1065877 1066140 24 - . . scaffold1213 WUBlastX LINE_RTE-X 1065979 1066125 37 - . . scaffold1213 GLEAN mRNA 1078275 1089237 0.999675 - . ID=CGI_10027483; scaffold1213 GLEAN promoter 1089238 1090237 0.999675 - . ID=CGI_10027483; scaffold1213 GLEAN promoter 1090166 1091165 0.544852 + . ID=CGI_10027484; scaffold1213 TRF Tandem_Repeat 1090932 1090969 76 + . . scaffold1213 GLEAN mRNA 1091166 1098987 0.544852 + . ID=CGI_10027484; scaffold1213 TRF Tandem_Repeat 1091570 1091656 142 + . . scaffold1213 TRF Tandem_Repeat 1091971 1092020 100 + . . scaffold1213 WUBlastX DNA_TcMar-Tc1 1109509 1110414 292 + . . scaffold1213 GLEAN mRNA 1112945 1137379 0.247457 - . ID=CGI_10027485; scaffold1213 TRF Tandem_Repeat 1118465 1118548 100 + . . scaffold1213 TRF Tandem_Repeat 1118465 1118548 77 + . . scaffold1213 TRF Tandem_Repeat 1118481 1118545 96 + . . scaffold1213 TRF Tandem_Repeat 1120562 1120611 91 + . . scaffold1213 TRF Tandem_Repeat 1130053 1130132 63 + . . scaffold1213 WUBlastX LTR_Ngaro 1132330 1133034 223 - . . scaffold1213 WUBlastX LTR_Ngaro 1133426 1133851 204 - . . scaffold1213 WUBlastX LTR_Ngaro 1133881 1134120 140 - . . scaffold1213 WUBlastX LTR_Ngaro 1134060 1134962 496 - . . scaffold1213 WUBlastX LTR_Ngaro 1134995 1135642 115 - . . scaffold1213 WUBlastX LTR_Ngaro 1135001 1135837 111 - . . scaffold1213 GLEAN promoter 1137380 1138379 0.247457 - . ID=CGI_10027485; scaffold1213 WUBlastX LTR_Gypsy-Cigr 1173313 1173768 55 + . . scaffold1213 WUBlastX LTR_Gypsy 1173580 1175271 71 + . . scaffold1213 WUBlastX LTR_Gypsy 1174003 1175271 198 + . . scaffold1213 WUBlastX LTR_Gypsy 1174504 1175271 274 + . . scaffold1213 WUBlastX LTR_Gypsy 1174720 1175280 295 + . . scaffold1213 WUBlastX LTR_Gypsy 1174798 1175271 350 + . . scaffold1213 WUBlastX LTR_Gypsy-Cigr 1175285 1176154 620 + . . scaffold1213 WUBlastX LTR_Gypsy 1176059 1176172 22 + . . scaffold1213 GLEAN promoter 1178356 1179355 1 + . ID=CGI_10027486; scaffold1213 GLEAN mRNA 1179356 1179847 1 + . ID=CGI_10027486; scaffold1213 GLEAN promoter 1207338 1208337 0.999611 + . ID=CGI_10027487; scaffold1213 GLEAN mRNA 1208338 1216985 0.999611 + . ID=CGI_10027487; scaffold1213 TRF Tandem_Repeat 1212643 1212700 116 + . . scaffold1213 TRF Tandem_Repeat 1213646 1214063 611 + . . scaffold1213 GLEAN promoter 1230098 1231097 0.99937 + . ID=CGI_10027488; scaffold1213 GLEAN mRNA 1231098 1231370 0.99937 + . ID=CGI_10027488; scaffold1213 GLEAN mRNA 1231840 1232073 0.999003 - . ID=CGI_10027489; scaffold1213 GLEAN promoter 1232074 1233073 0.999003 - . ID=CGI_10027489; scaffold1213 WUBlastX LTR_Gypsy-Cigr 1233279 1233605 41 + . . scaffold1213 WUBlastX LTR_Gypsy 1235595 1236398 333 + . . scaffold1213 WUBlastX LTR_Gypsy 1235841 1236407 340 + . . scaffold1213 WUBlastX LTR_Gypsy 1235925 1236398 357 + . . scaffold1213 WUBlastX LTR_Gypsy-Cigr 1236412 1237281 585 + . . scaffold1213 WUBlastX LTR_Gypsy 1236415 1237443 378 + . . scaffold1213 WUBlastX LTR_Gypsy 1237751 1237873 20 + . . scaffold1213 GLEAN promoter 1243086 1244085 0.999999 + . ID=CGI_10027492; scaffold1213 GLEAN mRNA 1244086 1251244 0.999999 + . ID=CGI_10027492; scaffold1213 TRF Tandem_Repeat 1257332 1258053 756 + . . scaffold1213 WUBlastX LTR_Ngaro 1261759 1261932 95 - . . scaffold1213 WUBlastX LTR_Ngaro 1261973 1262350 145 - . . scaffold1213 WUBlastX LTR_Ngaro 1261973 1262425 132 - . . scaffold1213 WUBlastX LTR_Ngaro 1262024 1262542 131 - . . scaffold1213 TRF Tandem_Repeat 1263134 1263992 996 + . . scaffold1213 TRF Tandem_Repeat 1266030 1266287 394 + . . scaffold1213 GLEAN mRNA 1278482 1293794 0.999222 - . ID=CGI_10027493; scaffold1213 TRF Tandem_Repeat 1279677 1279713 74 + . . scaffold1213 GLEAN promoter 1293795 1294794 0.999222 - . ID=CGI_10027493; scaffold1213 WUBlastX LTR_Ngaro 1298341 1298493 109 - . . scaffold1213 WUBlastX LTR_Ngaro 1298492 1298740 190 - . . scaffold1213 WUBlastX LTR_Ngaro 1298700 1299497 497 - . . scaffold1213 WUBlastX LTR_Ngaro 1299549 1300124 81 - . . scaffold1213 WUBlastX LTR_Ngaro 1299561 1300295 78 - . . scaffold1213 WUBlastX LTR_Ngaro 1299645 1300481 60 - . . scaffold1213 TRF Tandem_Repeat 1300759 1301426 1107 + . . scaffold1213 WUBlastX LINE_L1 1303234 1303650 42 + . . scaffold1213 WUBlastX LINE_L1-Tx1 1303303 1303638 54 + . . scaffold1213 WUBlastX LINE_L1 1303497 1303955 64 + . . scaffold1213 WUBlastX LINE_L1-Tx1 1303569 1304582 562 + . . scaffold1213 WUBlastX LINE_L1-Tx1 1304456 1305097 135 + . . scaffold1213 WUBlastX LINE_L1-Tx1 1304546 1305790 20 + . . scaffold1213 WUBlastX LINE_L1-Tx1 1304612 1305316 71 + . . scaffold1213 WUBlastX LINE_L1-Tx1 1305348 1305515 23 + . . scaffold1213 WUBlastX LINE_L1-Tx1 1305488 1305613 34 + . . scaffold1213 WUBlastX LTR_Pao 1307225 1307743 32 + . . scaffold1213 WUBlastX LTR_Pao 1307567 1308673 257 + . . scaffold1213 WUBlastX LTR_Pao 1307864 1308670 283 + . . scaffold1213 WUBlastX LTR_Pao 1307990 1308673 323 + . . scaffold1213 TRF Tandem_Repeat 1331570 1331596 54 + . . scaffold1213 TRF Tandem_Repeat 1339573 1339618 92 + . . scaffold1213 TRF Tandem_Repeat 1343297 1343355 73 + . . scaffold1213 TRF Tandem_Repeat 1343298 1343439 94 + . . scaffold1213 TRF Tandem_Repeat 1343374 1343505 90 + . . scaffold1213 TRF Tandem_Repeat 1343374 1343439 69 + . . scaffold1213 TRF Tandem_Repeat 1344040 1344075 72 + . . scaffold1213 WUBlastX DNA_TcMar-Tc2 1359161 1359271 51 - . . scaffold1213 WUBlastX DNA_TcMar-Tc2 1359315 1359428 20 - . . scaffold1213 GLEAN mRNA 1364377 1365015 1 - . ID=CGI_10027494; scaffold1213 TRF Tandem_Repeat 1364479 1364931 552 + . . scaffold1213 GLEAN promoter 1365016 1366015 1 - . ID=CGI_10027494; scaffold1214 GLEAN promoter 1 497 1 + . ID=CGI_10015471; scaffold1214 GLEAN mRNA 498 2889 1 + . ID=CGI_10015471; scaffold1214 TRF Tandem_Repeat 2692 2736 90 + . . scaffold1214 GLEAN mRNA 6612 34213 0.998287 - . ID=CGI_10015472; scaffold1214 TRF Tandem_Repeat 14094 14121 56 + . . scaffold1214 TRF Tandem_Repeat 16720 16775 112 + . . scaffold1214 TRF Tandem_Repeat 19137 19171 70 + . . scaffold1214 TRF Tandem_Repeat 27460 27506 94 + . . scaffold1214 TRF Tandem_Repeat 32794 32837 88 + . . scaffold1214 GLEAN promoter 34214 35213 0.998287 - . ID=CGI_10015472; scaffold1214 TRF Tandem_Repeat 34613 34668 78 + . . scaffold1214 TRF Tandem_Repeat 35550 35587 76 + . . scaffold1214 TRF Tandem_Repeat 36215 36244 60 + . . scaffold1214 GLEAN mRNA 38349 65809 0.141491 - . ID=CGI_10015473; scaffold1214 TRF Tandem_Repeat 43450 43979 873 + . . scaffold1214 TRF Tandem_Repeat 47947 48436 753 + . . scaffold1214 TRF Tandem_Repeat 56777 56832 112 + . . scaffold1214 TRF Tandem_Repeat 62443 62482 73 + . . scaffold1214 GLEAN promoter 65810 66809 0.141491 - . ID=CGI_10015473; scaffold1214 TRF Tandem_Repeat 67874 67929 112 + . . scaffold1214 WUBlastX LTR_Gypsy 85973 86116 59 - . . scaffold1214 WUBlastX LTR_Gypsy 86190 86633 78 - . . scaffold1214 WUBlastX LTR_Gypsy 86262 86636 98 - . . scaffold1214 WUBlastX LTR_Gypsy 86648 86803 75 - . . scaffold1214 WUBlastX LTR_Gypsy 86781 86873 34 - . . scaffold1214 WUBlastX LTR_Gypsy 87234 87443 63 - . . scaffold1214 GLEAN mRNA 95429 100897 0.999669 - . ID=CGI_10015474; scaffold1214 TRF Tandem_Repeat 100423 100468 83 + . . scaffold1214 GLEAN promoter 100898 101897 0.999669 - . ID=CGI_10015474; scaffold1214 GLEAN mRNA 104633 106631 0.558382 - . ID=CGI_10015475; scaffold1214 GLEAN promoter 106632 107631 0.558382 - . ID=CGI_10015475; scaffold1214 GLEAN promoter 107102 108101 0.657866 + . ID=CGI_10015476; scaffold1214 GLEAN mRNA 108102 111440 0.657866 + . ID=CGI_10015476; scaffold1214 TRF Tandem_Repeat 114146 114201 112 + . . scaffold1214 TRF Tandem_Repeat 114473 114503 62 + . . scaffold1214 GLEAN promoter 122562 123561 0.642994 + . ID=CGI_10015477; scaffold1214 GLEAN mRNA 123562 148526 0.642994 + . ID=CGI_10015477; scaffold1214 TRF Tandem_Repeat 131985 132731 963 + . . scaffold1214 GLEAN mRNA 134172 134381 1 - . ID=CGI_10015478; scaffold1214 GLEAN promoter 134382 135381 1 - . ID=CGI_10015478; scaffold1214 WUBlastX DNA_TcMar-m44 134421 135365 588 - . . scaffold1214 TRF Tandem_Repeat 150267 150371 201 + . . scaffold1214 GLEAN promoter 157582 158581 0.809234 + . ID=CGI_10015479; scaffold1214 GLEAN mRNA 158582 159474 0.809234 + . ID=CGI_10015479; scaffold1214 TRF Tandem_Repeat 169631 169679 98 + . . scaffold1214 WUBlastX LINE_L1-Tx1 177219 177725 64 + . . scaffold1214 TRF Tandem_Repeat 178561 178601 55 + . . scaffold1214 TRF Tandem_Repeat 179905 179998 127 + . . scaffold1214 TRF Tandem_Repeat 180185 180317 187 + . . scaffold1214 TRF Tandem_Repeat 180185 180363 164 + . . scaffold1214 TRF Tandem_Repeat 180442 180529 142 + . . scaffold1214 TRF Tandem_Repeat 186539 186566 56 + . . scaffold1214 TRF Tandem_Repeat 193251 193288 76 + . . scaffold1214 TRF Tandem_Repeat 193761 193790 60 + . . scaffold1214 WUBlastX DNA_hAT-hATw 195676 197121 34 - . . scaffold1214 WUBlastX DNA_hAT-hATw 196058 196423 68 - . . scaffold1214 WUBlastX DNA_hAT-hATw 196534 197127 55 - . . scaffold1214 TRF Tandem_Repeat 197150 197216 55 + . . scaffold1214 TRF Tandem_Repeat 199628 199759 117 + . . scaffold1214 TRF Tandem_Repeat 200801 200917 130 + . . scaffold1214 TRF Tandem_Repeat 201065 201103 78 + . . scaffold1214 TRF Tandem_Repeat 201622 201688 71 + . . scaffold1214 WUBlastX DNA_hAT-hATw 201842 202510 55 - . . scaffold1214 TRF Tandem_Repeat 207096 207156 59 + . . scaffold1214 TRF Tandem_Repeat 207805 207839 70 + . . scaffold1214 WUBlastX LINE_L1-Tx1 209691 209735 22 + . . scaffold1214 WUBlastX LINE_L2 209735 210325 135 + . . scaffold1214 WUBlastX LINE_RTE-BovB 209804 210934 107 + . . scaffold1214 WUBlastX LINE_RTE-X 209828 210748 301 + . . scaffold1214 WUBlastX LINE_RTE-X 210732 211082 33 + . . scaffold1214 TRF Tandem_Repeat 212390 212450 122 + . . scaffold1214 TRF Tandem_Repeat 212640 212682 77 + . . scaffold1214 TRF Tandem_Repeat 213403 213485 69 + . . scaffold1214 TRF Tandem_Repeat 213562 213622 50 + . . scaffold1214 TRF Tandem_Repeat 215900 215938 78 + . . scaffold1214 TRF Tandem_Repeat 216570 216604 63 + . . scaffold1214 WUBlastX DNA_Crypton 233231 233671 224 - . . scaffold1214 WUBlastX DNA_Crypton 233853 234359 193 - . . scaffold1214 GLEAN promoter 240265 241264 0.274712 + . ID=CGI_10015480; scaffold1214 GLEAN mRNA 241265 253884 0.274712 + . ID=CGI_10015480; scaffold1214 WUBlastX LINE_L2 243224 243550 28 + . . scaffold1214 WUBlastX LINE_RTE-X 243275 243658 116 + . . scaffold1214 WUBlastX LINE_I 243642 243695 23 + . . scaffold1214 WUBlastX LINE_RTE-X 243849 244232 56 + . . scaffold1214 WUBlastX LINE_RTE-X 244235 244675 54 + . . scaffold1214 WUBlastX LINE_RTE-X 244695 244766 33 + . . scaffold1214 WUBlastX LINE_RTE-X 244713 244787 27 + . . scaffold1214 TRF Tandem_Repeat 244986 245023 58 + . . scaffold1214 WUBlastX LINE_CR1 247105 247500 60 - . . scaffold1214 TRF Tandem_Repeat 247854 247945 87 + . . scaffold1214 WUBlastX LTR_Ngaro 249910 250071 40 - . . scaffold1214 WUBlastX LTR_Ngaro 250023 250439 235 - . . scaffold1214 WUBlastX LTR_Ngaro 250444 250734 206 - . . scaffold1214 WUBlastX LTR_Ngaro 250760 251122 162 - . . scaffold1214 WUBlastX LTR_Ngaro 251217 251711 26 - . . scaffold1214 WUBlastX LTR_Ngaro 251394 251768 134 - . . scaffold1214 TRF Tandem_Repeat 251921 252478 697 + . . scaffold1214 WUBlastX LTR_DIRS 254425 254529 35 + . . scaffold1214 WUBlastX LTR_DIRS 254691 255503 189 + . . scaffold1214 WUBlastX LTR_Gypsy 255369 255554 42 + . . scaffold1214 WUBlastX LTR_DIRS 255548 256300 134 + . . scaffold1214 WUBlastX LTR_DIRS 263096 263284 52 + . . scaffold1214 GLEAN mRNA 270536 276239 1 - . ID=CGI_10015482; scaffold1214 TRF Tandem_Repeat 274918 275120 140 + . . scaffold1214 TRF Tandem_Repeat 274974 275144 150 + . . scaffold1214 TRF Tandem_Repeat 275121 275267 123 + . . scaffold1214 GLEAN promoter 276240 277239 1 - . ID=CGI_10015482; scaffold1214 GLEAN mRNA 282682 309347 0.998661 - . ID=CGI_10015483; scaffold1214 TRF Tandem_Repeat 293756 293807 86 + . . scaffold1214 TRF Tandem_Repeat 293756 293813 73 + . . scaffold1214 TRF Tandem_Repeat 305549 305588 80 + . . scaffold1214 GLEAN promoter 309348 310347 0.998661 - . ID=CGI_10015483; scaffold1214 GLEAN promoter 310121 311120 0.949594 + . ID=CGI_10015485; scaffold1214 GLEAN mRNA 311121 312069 0.949594 + . ID=CGI_10015485; scaffold1214 TRF Tandem_Repeat 316212 316271 120 + . . scaffold1214 GLEAN promoter 320521 321520 0.372079 + . ID=CGI_10015486; scaffold1214 GLEAN mRNA 321521 327287 0.372079 + . ID=CGI_10015486; scaffold1214 WUBlastX LTR_Ngaro 337629 337817 60 - . . scaffold1214 WUBlastX LTR_Ngaro 337814 338200 91 - . . scaffold1214 WUBlastX LTR_Ngaro 338167 338340 68 - . . scaffold1214 WUBlastX LTR_Ngaro 338402 338905 46 - . . scaffold1214 WUBlastX LTR_Ngaro 338566 338709 51 - . . scaffold1214 WUBlastX LTR_Ngaro 340278 341147 255 - . . scaffold1214 WUBlastX DNA_TcMar-Tc1 344094 345077 270 - . . scaffold1214 TRF Tandem_Repeat 350453 350488 72 + . . scaffold1214 WUBlastX DNA_TcMar-Tc1 356893 357636 291 + . . scaffold1214 WUBlastX DNA_TcMar-Tc1 357645 357812 72 + . . scaffold1214 GLEAN mRNA 364173 366516 0.65086 - . ID=CGI_10015487; scaffold1214 GLEAN promoter 366517 367516 0.65086 - . ID=CGI_10015487; scaffold1214 GLEAN mRNA 370075 371920 1 - . ID=CGI_10015488; scaffold1214 TRF Tandem_Repeat 371117 371168 104 + . . scaffold1214 GLEAN promoter 371921 372920 1 - . ID=CGI_10015488; scaffold1214 GLEAN promoter 377438 378437 1 + . ID=CGI_10015489; scaffold1214 GLEAN mRNA 378438 379522 1 + . ID=CGI_10015489; scaffold1214 TRF Tandem_Repeat 379855 379894 80 + . . scaffold1214 WUBlastX LTR_Gypsy 382664 383530 31 + . . scaffold1214 WUBlastX LTR_Gypsy 382667 383032 36 + . . scaffold1214 WUBlastX LTR_Gypsy 383219 383899 69 + . . scaffold1214 WUBlastX LTR_Gypsy 383616 384155 53 + . . scaffold1214 WUBlastX LTR_Gypsy 383622 383780 102 + . . scaffold1214 WUBlastX LTR_Gypsy 383941 384216 35 + . . scaffold1214 WUBlastX LTR_Gypsy 384416 384796 76 + . . scaffold1214 TRF Tandem_Repeat 384846 384901 112 + . . scaffold1214 GLEAN promoter 399928 400927 0.999027 + . ID=CGI_10015490; scaffold1214 GLEAN mRNA 400928 406160 0.999027 + . ID=CGI_10015490; scaffold1214 TRF Tandem_Repeat 401184 401213 51 + . . scaffold1214 TRF Tandem_Repeat 428470 428553 150 + . . scaffold1215 GLEAN mRNA 8264 10729 1 - . ID=CGI_10002053; scaffold1215 GLEAN promoter 10730 11729 1 - . ID=CGI_10002053; scaffold1215 GLEAN promoter 13197 14196 0.999321 + . ID=CGI_10002056; scaffold1215 GLEAN mRNA 14197 14727 0.999321 + . ID=CGI_10002056; scaffold1215 GLEAN promoter 16824 17823 0.481487 + . ID=CGI_10002058; scaffold1215 GLEAN mRNA 17824 19065 0.481487 + . ID=CGI_10002058; scaffold1215 GLEAN promoter 18152 19151 0.999999 + . ID=CGI_10002059; scaffold1215 GLEAN mRNA 19152 19523 0.999999 + . ID=CGI_10002059; scaffold1215 GLEAN promoter 31353 32352 0.686292 + . ID=CGI_10002063; scaffold1215 GLEAN mRNA 32353 33712 0.686292 + . ID=CGI_10002063; scaffold1217 WUBlastX LTR_Ngaro 47364 47771 91 + . . scaffold1217 WUBlastX LTR_Ngaro 47800 47907 38 + . . scaffold1217 WUBlastX LTR_Ngaro 47806 47928 28 + . . scaffold1217 WUBlastX LTR_Ngaro 47940 48113 86 + . . scaffold1217 TRF Tandem_Repeat 48133 48241 127 + . . scaffold1217 TRF Tandem_Repeat 48475 48511 74 + . . scaffold1217 TRF Tandem_Repeat 49080 49125 92 + . . scaffold1217 TRF Tandem_Repeat 49586 49638 88 + . . scaffold1217 TRF Tandem_Repeat 49707 49780 130 + . . scaffold1217 TRF Tandem_Repeat 50021 50131 129 + . . scaffold1217 WUBlastX LTR_Ngaro 50138 50176 31 + . . scaffold1217 WUBlastX LTR_Ngaro 50147 51241 476 + . . scaffold1217 WUBlastX LTR_Ngaro 51138 51419 42 + . . scaffold1217 WUBlastX LTR_Ngaro 51639 51980 102 + . . scaffold1217 WUBlastX LTR_Ngaro 51965 52324 196 + . . scaffold1217 WUBlastX DNA_TcMar-Tc1 61840 62883 239 + . . scaffold1217 TRF Tandem_Repeat 68232 68339 123 + . . scaffold1217 TRF Tandem_Repeat 69410 69447 51 + . . scaffold1217 TRF Tandem_Repeat 69962 70012 102 + . . scaffold1217 WUBlastX LTR_Gypsy 71362 71556 27 + . . scaffold1217 WUBlastX LTR_Gypsy 71398 72309 49 + . . scaffold1217 WUBlastX LTR_Gypsy 71658 71822 66 + . . scaffold1217 WUBlastX LTR_Gypsy 71752 72369 189 + . . scaffold1217 WUBlastX LTR_Gypsy 71863 72399 203 + . . scaffold1217 WUBlastX LTR_Gypsy 71863 72300 233 + . . scaffold1217 GLEAN mRNA 92247 100613 0.998245 - . ID=CGI_10009994; scaffold1217 TRF Tandem_Repeat 93483 93843 502 + . . scaffold1217 GLEAN promoter 100614 101613 0.998245 - . ID=CGI_10009994; scaffold1217 WUBlastX LINE_I 123280 123342 24 + . . scaffold1217 WUBlastX LINE_RTE-X 123605 124324 244 + . . scaffold1217 WUBlastX LINE_RTE-X 124245 124829 307 + . . scaffold1217 WUBlastX LINE_RTE-X 125138 125464 60 + . . scaffold1217 WUBlastX LTR_Gypsy 129566 130576 81 - . . scaffold1217 WUBlastX LTR_Gypsy 129719 130576 233 - . . scaffold1217 WUBlastX LTR_Gypsy 130127 130693 82 - . . scaffold1217 WUBlastX LTR_Gypsy 130588 130788 65 - . . scaffold1217 WUBlastX LTR_Gypsy 130615 130866 43 - . . scaffold1217 GLEAN promoter 131340 132339 0.739794 + . ID=CGI_10009995; scaffold1217 GLEAN mRNA 132340 134181 0.739794 + . ID=CGI_10009995; scaffold1217 WUBlastX LTR_Gypsy 133246 133965 176 + . . scaffold1217 WUBlastX LTR_Gypsy 134003 134056 28 + . . scaffold1217 WUBlastX LTR_Gypsy-Cigr 134139 134561 48 + . . scaffold1217 GLEAN promoter 135030 136029 0.999436 + . ID=CGI_10009996; scaffold1217 GLEAN mRNA 136030 136287 0.999436 + . ID=CGI_10009996; scaffold1217 TRF Tandem_Repeat 136906 136960 83 + . . scaffold1217 TRF Tandem_Repeat 141959 142012 108 + . . scaffold1217 TRF Tandem_Repeat 149426 149479 108 + . . scaffold1217 GLEAN promoter 154787 155786 0.446428 + . ID=CGI_10009997; scaffold1217 GLEAN mRNA 155787 178725 0.446428 + . ID=CGI_10009997; scaffold1217 TRF Tandem_Repeat 167759 167801 86 + . . scaffold1217 GLEAN mRNA 179574 191340 0.499207 - . ID=CGI_10009998; scaffold1217 TRF Tandem_Repeat 181274 181316 86 + . . scaffold1217 GLEAN promoter 190357 191356 0.628071 + . ID=CGI_10009999; scaffold1217 GLEAN promoter 191341 192340 0.499207 - . ID=CGI_10009998; scaffold1217 GLEAN mRNA 191357 199080 0.628071 + . ID=CGI_10009999; scaffold1217 GLEAN mRNA 193443 204061 0.999662 - . ID=CGI_10010000; scaffold1217 TRF Tandem_Repeat 194372 194410 51 + . . scaffold1217 TRF Tandem_Repeat 196609 196664 112 + . . scaffold1217 TRF Tandem_Repeat 201405 201441 74 + . . scaffold1217 TRF Tandem_Repeat 201911 201939 58 + . . scaffold1217 GLEAN promoter 204062 205061 0.999662 - . ID=CGI_10010000; scaffold1217 TRF Tandem_Repeat 207090 207127 76 + . . scaffold1217 GLEAN mRNA 209874 210455 1 - . ID=CGI_10010001; scaffold1217 GLEAN promoter 210456 211455 1 - . ID=CGI_10010001; scaffold1217 TRF Tandem_Repeat 217060 217131 67 + . . scaffold1217 GLEAN promoter 222755 223754 0.999661 + . ID=CGI_10010002; scaffold1217 GLEAN mRNA 223755 226220 0.999661 + . ID=CGI_10010002; scaffold1217 GLEAN mRNA 224631 235578 0.333531 - . ID=CGI_10010003; scaffold1217 GLEAN promoter 229091 230090 0.806424 + . ID=CGI_10010004; scaffold1217 GLEAN mRNA 230091 238601 0.806424 + . ID=CGI_10010004; scaffold1217 GLEAN promoter 235579 236578 0.333531 - . ID=CGI_10010003; scaffold1219 GLEAN promoter 1 763 0.994167 + . ID=CGI_10024240; scaffold1219 GLEAN mRNA 764 10049 0.994167 + . ID=CGI_10024240; scaffold1219 TRF Tandem_Repeat 4966 5589 764 + . . scaffold1219 TRF Tandem_Repeat 15884 16040 197 + . . scaffold1219 GLEAN promoter 17418 18417 1 + . ID=CGI_10024241; scaffold1219 TRF Tandem_Repeat 17921 17988 57 + . . scaffold1219 TRF Tandem_Repeat 17940 18014 55 + . . scaffold1219 GLEAN mRNA 18418 21437 1 + . ID=CGI_10024241; scaffold1219 TRF Tandem_Repeat 20329 20577 417 + . . scaffold1219 TRF Tandem_Repeat 21899 22006 170 + . . scaffold1219 GLEAN promoter 27821 28820 1 + . ID=CGI_10024242; scaffold1219 GLEAN mRNA 28821 31939 1 + . ID=CGI_10024242; scaffold1219 TRF Tandem_Repeat 29160 29283 57 + . . scaffold1219 TRF Tandem_Repeat 29174 29315 142 + . . scaffold1219 TRF Tandem_Repeat 32185 32449 282 + . . scaffold1219 TRF Tandem_Repeat 35736 35937 194 + . . scaffold1219 GLEAN promoter 53873 54872 0.956539 + . ID=CGI_10024245; scaffold1219 GLEAN mRNA 54873 82081 0.956539 + . ID=CGI_10024245; scaffold1219 TRF Tandem_Repeat 60036 60080 90 + . . scaffold1219 TRF Tandem_Repeat 61147 61188 84 + . . scaffold1219 TRF Tandem_Repeat 68030 68376 480 + . . scaffold1219 TRF Tandem_Repeat 70953 71745 950 + . . scaffold1219 TRF Tandem_Repeat 74181 74214 59 + . . scaffold1219 TRF Tandem_Repeat 76224 76435 110 + . . scaffold1219 TRF Tandem_Repeat 80496 80983 615 + . . scaffold1219 TRF Tandem_Repeat 81110 81200 85 + . . scaffold1219 TRF Tandem_Repeat 81110 81218 71 + . . scaffold1219 TRF Tandem_Repeat 81111 81205 111 + . . scaffold1219 GLEAN promoter 84290 85289 0.999351 + . ID=CGI_10024246; scaffold1219 GLEAN mRNA 85290 96335 0.999351 + . ID=CGI_10024246; scaffold1219 TRF Tandem_Repeat 96784 96855 144 + . . scaffold1219 TRF Tandem_Repeat 98105 98148 88 + . . scaffold1219 TRF Tandem_Repeat 102337 102695 184 + . . scaffold1219 TRF Tandem_Repeat 102876 102970 104 + . . scaffold1219 TRF Tandem_Repeat 103823 104295 583 + . . scaffold1219 TRF Tandem_Repeat 104055 104276 134 + . . scaffold1219 GLEAN promoter 110591 111590 0.999997 + . ID=CGI_10024247; scaffold1219 TRF Tandem_Repeat 110608 110642 70 + . . scaffold1219 GLEAN mRNA 111591 114227 0.999997 + . ID=CGI_10024247; scaffold1219 TRF Tandem_Repeat 122978 123032 92 + . . scaffold1219 TRF Tandem_Repeat 123327 123394 136 + . . scaffold1219 TRF Tandem_Repeat 123909 125738 1561 + . . scaffold1219 GLEAN promoter 136971 137970 0.415978 + . ID=CGI_10024248; scaffold1219 GLEAN mRNA 137971 152338 0.415978 + . ID=CGI_10024248; scaffold1219 TRF Tandem_Repeat 139429 139639 298 + . . scaffold1219 TRF Tandem_Repeat 139431 139655 243 + . . scaffold1219 TRF Tandem_Repeat 144096 144223 88 + . . scaffold1219 GLEAN promoter 154007 155006 1 + . ID=CGI_10024249; scaffold1219 GLEAN mRNA 155007 159581 1 + . ID=CGI_10024249; scaffold1219 GLEAN promoter 159315 160314 0.986676 + . ID=CGI_10024250; scaffold1219 GLEAN mRNA 160315 161448 0.986676 + . ID=CGI_10024250; scaffold1219 GLEAN mRNA 164198 170611 0.990827 - . ID=CGI_10024251; scaffold1219 GLEAN promoter 165631 166630 0.973926 + . ID=CGI_10024252; scaffold1219 GLEAN mRNA 166631 173910 0.973926 + . ID=CGI_10024252; scaffold1219 GLEAN promoter 170612 171611 0.990827 - . ID=CGI_10024251; scaffold1219 GLEAN mRNA 176935 183038 0.999883 - . ID=CGI_10024253; scaffold1219 TRF Tandem_Repeat 178518 178984 642 + . . scaffold1219 TRF Tandem_Repeat 178543 178982 601 + . . scaffold1219 TRF Tandem_Repeat 179919 180135 312 + . . scaffold1219 GLEAN promoter 183039 184038 0.999883 - . ID=CGI_10024253; scaffold1219 GLEAN mRNA 183505 190496 0.999885 - . ID=CGI_10024254; scaffold1219 GLEAN promoter 190497 191496 0.999885 - . ID=CGI_10024254; scaffold1219 GLEAN mRNA 193630 200020 1 - . ID=CGI_10024255; scaffold1219 TRF Tandem_Repeat 197219 197533 560 + . . scaffold1219 GLEAN promoter 200021 201020 1 - . ID=CGI_10024255; scaffold1219 GLEAN promoter 200337 201336 0.966394 + . ID=CGI_10024256; scaffold1219 GLEAN mRNA 201337 204345 0.966394 + . ID=CGI_10024256; scaffold1219 GLEAN mRNA 201804 213731 0.810953 - . ID=CGI_10024257; scaffold1219 TRF Tandem_Repeat 208063 208211 90 + . . scaffold1219 TRF Tandem_Repeat 209625 209656 55 + . . scaffold1219 GLEAN promoter 213732 214731 0.810953 - . ID=CGI_10024257; scaffold1219 GLEAN mRNA 214823 223922 1 - . ID=CGI_10024258; scaffold1219 TRF Tandem_Repeat 217867 218218 542 + . . scaffold1219 TRF Tandem_Repeat 221283 221689 742 + . . scaffold1219 GLEAN promoter 223923 224922 1 - . ID=CGI_10024258; scaffold1219 TRF Tandem_Repeat 230345 230768 539 + . . scaffold1219 TRF Tandem_Repeat 232020 232306 347 + . . scaffold1219 TRF Tandem_Repeat 236109 236520 389 + . . scaffold1219 TRF Tandem_Repeat 242006 242152 197 + . . scaffold1219 TRF Tandem_Repeat 243042 243081 52 + . . scaffold1219 GLEAN promoter 245151 246150 0.965828 + . ID=CGI_10024259; scaffold1219 GLEAN mRNA 246151 252332 0.965828 + . ID=CGI_10024259; scaffold1219 TRF Tandem_Repeat 258833 258992 286 + . . scaffold1219 TRF Tandem_Repeat 265326 265743 759 + . . scaffold1219 GLEAN promoter 267127 268126 0.995044 + . ID=CGI_10024260; scaffold1219 GLEAN mRNA 268127 273999 0.995044 + . ID=CGI_10024260; scaffold1219 GLEAN promoter 286821 287820 1 + . ID=CGI_10024261; scaffold1219 GLEAN mRNA 287821 289052 1 + . ID=CGI_10024261; scaffold1219 GLEAN mRNA 290342 300616 0.999143 - . ID=CGI_10024262; scaffold1219 GLEAN promoter 300617 301616 0.999143 - . ID=CGI_10024262; scaffold1219 TRF Tandem_Repeat 302184 302220 74 + . . scaffold1219 TRF Tandem_Repeat 307859 307921 126 + . . scaffold1219 TRF Tandem_Repeat 310556 311185 399 + . . scaffold1219 TRF Tandem_Repeat 310621 311134 520 + . . scaffold1219 TRF Tandem_Repeat 312889 312930 84 + . . scaffold1219 TRF Tandem_Repeat 315373 315427 110 + . . scaffold1219 TRF Tandem_Repeat 318241 318547 353 + . . scaffold1219 TRF Tandem_Repeat 318241 318547 353 + . . scaffold1219 WUBlastX LINE_CR1-L2 318778 318945 51 + . . scaffold1219 WUBlastX LINE_CR1-L2 319185 319373 20 + . . scaffold1219 TRF Tandem_Repeat 319424 319654 248 + . . scaffold1219 TRF Tandem_Repeat 319424 319654 248 + . . scaffold1219 TRF Tandem_Repeat 320077 320201 115 + . . scaffold1219 TRF Tandem_Repeat 320350 320591 351 + . . scaffold1219 TRF Tandem_Repeat 320358 320567 124 + . . scaffold1219 WUBlastX LINE_R2-Hero 321595 322896 104 - . . scaffold1219 WUBlastX LINE_R2-Hero 322378 322896 115 - . . scaffold1219 WUBlastX LINE_R2-Hero 322796 323005 42 - . . scaffold1219 WUBlastX LINE_R2-Hero 323085 323231 33 - . . scaffold1219 WUBlastX LINE_R2-Hero 323243 323749 246 - . . scaffold1219 WUBlastX LINE_R2-Hero 323724 324185 234 - . . scaffold1219 WUBlastX LTR_Gypsy 324205 324282 28 + . . scaffold1219 WUBlastX LTR_Gypsy-Troyk 324244 324318 27 + . . scaffold1219 WUBlastX LTR_Gypsy 324341 324682 38 + . . scaffold1219 WUBlastX LTR_Gypsy-Troyk 324616 324993 41 + . . scaffold1219 WUBlastX LTR_Gypsy-Troyk 325056 325184 70 + . . scaffold1219 TRF Tandem_Repeat 326054 326202 215 + . . scaffold1219 GLEAN promoter 327817 328816 1 + . ID=CGI_10024263; scaffold1219 TRF Tandem_Repeat 327910 328020 123 + . . scaffold1219 GLEAN mRNA 328817 330902 1 + . ID=CGI_10024263; scaffold1219 GLEAN promoter 330059 331058 0.999998 + . ID=CGI_10024265; scaffold1219 GLEAN mRNA 330768 344080 0.874302 - . ID=CGI_10024264; scaffold1219 GLEAN mRNA 331059 337225 0.999998 + . ID=CGI_10024265; scaffold1219 TRF Tandem_Repeat 331969 332320 550 + . . scaffold1219 TRF Tandem_Repeat 332428 333918 161 + . . scaffold1219 TRF Tandem_Repeat 332691 334114 461 + . . scaffold1219 TRF Tandem_Repeat 332883 333106 193 + . . scaffold1219 TRF Tandem_Repeat 333307 333396 63 + . . scaffold1219 TRF Tandem_Repeat 333762 333898 116 + . . scaffold1219 TRF Tandem_Repeat 334002 334127 148 + . . scaffold1219 GLEAN promoter 344081 345080 0.874302 - . ID=CGI_10024264; scaffold1219 GLEAN mRNA 350888 356400 0.937811 - . ID=CGI_10024266; scaffold1219 GLEAN promoter 355624 356623 0.8139 + . ID=CGI_10024267; scaffold1219 GLEAN promoter 356401 357400 0.937811 - . ID=CGI_10024266; scaffold1219 GLEAN mRNA 356624 375079 0.8139 + . ID=CGI_10024267; scaffold1219 TRF Tandem_Repeat 368914 369129 405 + . . scaffold1219 TRF Tandem_Repeat 370195 370992 1272 + . . scaffold1219 TRF Tandem_Repeat 371988 372024 65 + . . scaffold1219 TRF Tandem_Repeat 373405 373452 69 + . . scaffold1219 GLEAN mRNA 378195 380336 1 - . ID=CGI_10024268; scaffold1219 GLEAN promoter 380337 381336 1 - . ID=CGI_10024268; scaffold1219 TRF Tandem_Repeat 382661 384540 1994 + . . scaffold1219 TRF Tandem_Repeat 382721 382804 64 + . . scaffold1219 TRF Tandem_Repeat 382736 382821 63 + . . scaffold1219 TRF Tandem_Repeat 384026 384356 96 + . . scaffold1219 TRF Tandem_Repeat 385466 385535 88 + . . scaffold1219 GLEAN mRNA 388687 397004 1 - . ID=CGI_10024269; scaffold1219 GLEAN promoter 397005 398004 1 - . ID=CGI_10024269; scaffold1219 TRF Tandem_Repeat 397502 397534 50 + . . scaffold1219 WUBlastX LINE_RTE-X 398520 398981 116 + . . scaffold1219 WUBlastX LINE_RTE-X 398571 399134 80 + . . scaffold1219 WUBlastX LINE_RTE-X 400532 400816 105 - . . scaffold1219 WUBlastX LINE_RTE-X 400616 401041 56 - . . scaffold1219 WUBlastX LINE_RTE-X 401116 401679 217 - . . scaffold1219 GLEAN promoter 402164 403163 1 + . ID=CGI_10024270; scaffold1219 GLEAN mRNA 403164 406929 1 + . ID=CGI_10024270; scaffold1219 WUBlastX LINE_RTE-X 407475 407837 48 + . . scaffold1219 WUBlastX LINE_RTE-X 407598 407816 103 + . . scaffold1219 WUBlastX LINE_RTE-X 407607 407945 89 + . . scaffold1219 WUBlastX LINE_RTE-X 408665 408760 33 - . . scaffold1219 WUBlastX LINE_RTE-X 408762 409052 137 - . . scaffold1219 TRF Tandem_Repeat 420172 420305 119 + . . scaffold1219 WUBlastX LINE_RTE-X 422418 422675 24 + . . scaffold1219 WUBlastX LINE_RTE-X 422418 422624 51 + . . scaffold1219 WUBlastX LINE_RTE-X 422753 423100 173 + . . scaffold1219 WUBlastX LINE_RTE-X 422813 423100 192 + . . scaffold1219 WUBlastX LINE_RTE-X 422813 423193 96 + . . scaffold1219 WUBlastX LINE_RTE-X 423114 423806 23 + . . scaffold1219 WUBlastX LINE_RTE-X 423114 423656 69 + . . scaffold1219 WUBlastX LINE_RTE-X 423525 423692 71 + . . scaffold1219 TRF Tandem_Repeat 428817 429076 350 + . . scaffold1219 GLEAN mRNA 430107 431873 0.412716 - . ID=CGI_10024271; scaffold1219 GLEAN promoter 431874 432873 0.412716 - . ID=CGI_10024271; scaffold1219 GLEAN promoter 433092 434091 1 + . ID=CGI_10024272; scaffold1219 GLEAN mRNA 434092 437417 1 + . ID=CGI_10024272; scaffold1219 GLEAN promoter 436789 437788 1 + . ID=CGI_10024274; scaffold1219 GLEAN mRNA 437591 437773 0.999372 - . ID=CGI_10024273; scaffold1219 GLEAN promoter 437774 438773 0.999372 - . ID=CGI_10024273; scaffold1219 GLEAN mRNA 437789 439803 1 + . ID=CGI_10024274; scaffold1219 TRF Tandem_Repeat 438778 438816 78 + . . scaffold1219 TRF Tandem_Repeat 442216 442329 59 + . . scaffold1219 TRF Tandem_Repeat 442262 442410 88 + . . scaffold1219 GLEAN promoter 443556 444555 0.95965 + . ID=CGI_10024275; scaffold1219 GLEAN mRNA 444556 448674 0.95965 + . ID=CGI_10024275; scaffold1219 WUBlastX LINE_RTE-X 449708 449926 24 + . . scaffold1219 WUBlastX LINE_RTE-X 449753 449890 45 + . . scaffold1219 GLEAN promoter 451750 452749 1 + . ID=CGI_10024276; scaffold1219 GLEAN mRNA 452750 453688 1 + . ID=CGI_10024276; scaffold1219 GLEAN mRNA 459106 471025 0.999675 - . ID=CGI_10024277; scaffold1219 TRF Tandem_Repeat 462143 469012 6281 + . . scaffold1219 GLEAN promoter 471026 472025 0.999675 - . ID=CGI_10024277; scaffold1219 GLEAN promoter 471830 472829 1 + . ID=CGI_10024278; scaffold1219 GLEAN mRNA 472830 478869 1 + . ID=CGI_10024278; scaffold1219 TRF Tandem_Repeat 477292 477477 192 + . . scaffold1219 TRF Tandem_Repeat 477373 477512 95 + . . scaffold1219 GLEAN mRNA 479446 482010 0.558395 - . ID=CGI_10024279; scaffold1219 GLEAN promoter 482011 483010 0.558395 - . ID=CGI_10024279; scaffold1219 TRF Tandem_Repeat 488217 488271 83 + . . scaffold1219 GLEAN promoter 506271 507270 0.457472 + . ID=CGI_10024280; scaffold1219 GLEAN mRNA 507271 517281 0.457472 + . ID=CGI_10024280; scaffold1219 TRF Tandem_Repeat 511161 511400 128 + . . scaffold1219 TRF Tandem_Repeat 522358 522411 99 + . . scaffold1219 GLEAN mRNA 523663 531569 0.527402 - . ID=CGI_10024281; scaffold1219 TRF Tandem_Repeat 527691 528709 1203 + . . scaffold1219 TRF Tandem_Repeat 528879 528957 104 + . . scaffold1219 TRF Tandem_Repeat 528882 528949 64 + . . scaffold1219 GLEAN promoter 531570 532569 0.527402 - . ID=CGI_10024281; scaffold1219 GLEAN mRNA 532983 538102 0.998954 - . ID=CGI_10024282; scaffold1219 TRF Tandem_Repeat 534227 534296 140 + . . scaffold1219 GLEAN promoter 538103 539102 0.998954 - . ID=CGI_10024282; scaffold1219 GLEAN mRNA 538126 544913 0.999676 - . ID=CGI_10024283; scaffold1219 TRF Tandem_Repeat 538347 539787 1888 + . . scaffold1219 GLEAN promoter 544914 545913 0.999676 - . ID=CGI_10024283; scaffold1219 GLEAN promoter 550169 551168 0.775752 + . ID=CGI_10024284; scaffold1219 GLEAN mRNA 551169 555588 0.775752 + . ID=CGI_10024284; scaffold1219 GLEAN mRNA 560250 563558 0.529261 - . ID=CGI_10024285; scaffold1219 GLEAN promoter 563559 564558 0.529261 - . ID=CGI_10024285; scaffold1219 GLEAN mRNA 568258 618995 0.744896 - . ID=CGI_10024286; scaffold1219 GLEAN promoter 574040 575039 1 + . ID=CGI_10024287; scaffold1219 GLEAN mRNA 575040 579039 1 + . ID=CGI_10024287; scaffold1219 TRF Tandem_Repeat 575631 575672 59 + . . scaffold1219 WUBlastX LINE_RTE-X 581388 581936 69 - . . scaffold1219 WUBlastX LINE_RTE-X 581505 581927 122 - . . scaffold1219 TRF Tandem_Repeat 599795 599831 74 + . . scaffold1219 TRF Tandem_Repeat 602622 602665 52 + . . scaffold1219 TRF Tandem_Repeat 607833 607939 168 + . . scaffold1219 TRF Tandem_Repeat 609019 609193 323 + . . scaffold1219 WUBlastX LTR_DIRS 615345 616181 609 - . . scaffold1219 WUBlastX LTR_DIRS 616154 617539 1207 - . . scaffold1219 WUBlastX LTR_Gypsy 618177 618968 66 - . . scaffold1219 WUBlastX LTR_DIRS 618342 618959 513 - . . scaffold1219 GLEAN promoter 618996 619995 0.744896 - . ID=CGI_10024286; scaffold1219 WUBlastX LTR_DIRS 619007 619798 158 - . . scaffold1219 WUBlastX LTR_DIRS 619037 619684 179 - . . scaffold1219 WUBlastX LTR_DIRS 619085 619966 148 - . . scaffold1219 TRF Tandem_Repeat 624402 624467 132 + . . scaffold1219 GLEAN promoter 632467 633466 0.999415 + . ID=CGI_10024288; scaffold1219 GLEAN mRNA 633467 634258 0.999415 + . ID=CGI_10024288; scaffold1219 TRF Tandem_Repeat 638969 639011 86 + . . scaffold1219 TRF Tandem_Repeat 649918 649952 61 + . . scaffold1219 GLEAN mRNA 659213 680644 0.995315 - . ID=CGI_10024289; scaffold1219 TRF Tandem_Repeat 679748 679793 56 + . . scaffold1219 TRF Tandem_Repeat 679748 679805 100 + . . scaffold1219 GLEAN promoter 680645 681644 0.995315 - . ID=CGI_10024289; scaffold1219 TRF Tandem_Repeat 696443 696501 109 + . . scaffold1219 GLEAN mRNA 698974 699915 1 - . ID=CGI_10024290; scaffold1219 GLEAN promoter 699916 700915 1 - . ID=CGI_10024290; scaffold1219 TRF Tandem_Repeat 701799 701848 100 + . . scaffold1219 GLEAN promoter 707411 708410 0.999675 + . ID=CGI_10024291; scaffold1219 TRF Tandem_Repeat 708086 708143 116 + . . scaffold1219 GLEAN mRNA 708411 709710 0.999675 + . ID=CGI_10024291; scaffold1219 GLEAN promoter 709173 710172 1 + . ID=CGI_10024292; scaffold1219 GLEAN mRNA 710173 710922 1 + . ID=CGI_10024292; scaffold1219 GLEAN mRNA 713642 718003 0.83598 - . ID=CGI_10024293; scaffold1219 GLEAN promoter 718004 719003 0.83598 - . ID=CGI_10024293; scaffold1219 TRF Tandem_Repeat 721028 721070 86 + . . scaffold1219 GLEAN promoter 721690 722689 0.995594 + . ID=CGI_10024294; scaffold1219 GLEAN promoter 722138 723137 0.99546 + . ID=CGI_10024295; scaffold1219 GLEAN mRNA 722690 723037 0.995594 + . ID=CGI_10024294; scaffold1219 GLEAN mRNA 723138 724746 0.99546 + . ID=CGI_10024295; scaffold1219 GLEAN promoter 729073 730072 0.999664 + . ID=CGI_10024296; scaffold1219 GLEAN mRNA 730073 738881 0.999664 + . ID=CGI_10024296; scaffold1219 TRF Tandem_Repeat 731076 731133 109 + . . scaffold1219 TRF Tandem_Repeat 734779 734831 97 + . . scaffold1219 TRF Tandem_Repeat 736395 736510 173 + . . scaffold1219 WUBlastX LINE_L1-Tx1 742049 742408 59 + . . scaffold1219 WUBlastX DNA_Harbinger 748345 748596 83 + . . scaffold1219 WUBlastX LINE_CR1-L2 753269 753985 119 + . . scaffold1219 WUBlastX LINE_CR1-L2 753983 754513 124 + . . scaffold1219 WUBlastX LINE_CR1-L2 754013 754432 161 + . . scaffold1219 WUBlastX DNA_Harbinger 764570 764854 58 - . . scaffold1219 WUBlastX DNA_Harbinger 764576 764770 63 - . . scaffold1219 WUBlastX LINE_L1-Tx1 773727 775379 250 - . . scaffold1219 WUBlastX LINE_L1-Tx1 773733 774452 254 - . . scaffold1219 WUBlastX LINE_L1 774452 775729 215 - . . scaffold1219 WUBlastX LINE_L1 774455 774940 367 - . . scaffold1219 WUBlastX LINE_L1-Tx1 775725 776288 178 - . . scaffold1219 WUBlastX LINE_L1 775975 776385 58 - . . scaffold1219 TRF Tandem_Repeat 779360 779394 54 + . . scaffold1219 WUBlastX LINE_L1-Tx1 783044 783439 84 - . . scaffold1219 TRF Tandem_Repeat 785050 785100 59 + . . scaffold1219 TRF Tandem_Repeat 785050 785100 68 + . . scaffold1219 TRF Tandem_Repeat 785058 785103 65 + . . scaffold1219 WUBlastX LINE_L1 785908 786165 49 - . . scaffold1219 WUBlastX LINE_L1-Tx1 786156 786641 187 - . . scaffold1219 WUBlastX LINE_L1-Tx1 786320 787447 260 - . . scaffold1219 TRF Tandem_Repeat 794709 794758 75 + . . scaffold1219 GLEAN promoter 803100 804099 0.893641 + . ID=CGI_10024297; scaffold1219 GLEAN mRNA 804100 817705 0.893641 + . ID=CGI_10024297; scaffold1219 GLEAN mRNA 821676 825554 0.999996 - . ID=CGI_10024298; scaffold1219 GLEAN promoter 825555 826554 0.999996 - . ID=CGI_10024298; scaffold1219 GLEAN mRNA 828871 837938 1 - . ID=CGI_10024299; scaffold1219 GLEAN promoter 837939 838938 1 - . ID=CGI_10024299; scaffold1219 TRF Tandem_Repeat 838001 838040 53 + . . scaffold1219 TRF Tandem_Repeat 838004 838029 52 + . . scaffold1219 TRF Tandem_Repeat 840914 840960 94 + . . scaffold1219 GLEAN promoter 842216 843215 0.997976 + . ID=CGI_10024301; scaffold1219 GLEAN mRNA 843176 855790 0.999997 - . ID=CGI_10024300; scaffold1219 GLEAN mRNA 843216 848800 0.997976 + . ID=CGI_10024301; scaffold1219 TRF Tandem_Repeat 848380 848423 88 + . . scaffold1219 GLEAN promoter 855791 856790 0.999997 - . ID=CGI_10024300; scaffold1219 GLEAN mRNA 860981 863973 0.999999 - . ID=CGI_10024302; scaffold1219 GLEAN promoter 863974 864973 0.999999 - . ID=CGI_10024302; scaffold1219 GLEAN mRNA 865490 866677 1 - . ID=CGI_10024303; scaffold1219 GLEAN promoter 866678 867677 1 - . ID=CGI_10024303; scaffold1219 GLEAN promoter 867848 868847 0.999351 + . ID=CGI_10024304; scaffold1219 GLEAN mRNA 868848 874682 0.999351 + . ID=CGI_10024304; scaffold1219 WUBlastX LINE_L1-Tx1 870343 870828 30 - . . scaffold1219 WUBlastX LINE_L1-Tx1 870448 870834 82 - . . scaffold1219 WUBlastX LINE_L1-Tx1 870451 871062 46 - . . scaffold1219 WUBlastX LINE_Dong-R4 870640 870870 51 - . . scaffold1219 GLEAN mRNA 875353 877136 1 - . ID=CGI_10024305; scaffold1219 GLEAN promoter 877137 878136 1 - . ID=CGI_10024305; scaffold1219 GLEAN mRNA 877650 883570 0.449005 - . ID=CGI_10024306; scaffold1219 TRF Tandem_Repeat 878178 878223 92 + . . scaffold1219 GLEAN promoter 883571 884570 0.449005 - . ID=CGI_10024306; scaffold1219 GLEAN mRNA 887545 905179 0.837482 - . ID=CGI_10024307; scaffold1219 TRF Tandem_Repeat 893192 893239 69 + . . scaffold1219 TRF Tandem_Repeat 893192 893245 63 + . . scaffold1219 WUBlastX DNA_hAT-Blackja 896885 897184 80 - . . scaffold1219 GLEAN promoter 900571 901570 1 + . ID=CGI_10024308; scaffold1219 GLEAN mRNA 901571 905249 1 + . ID=CGI_10024308; scaffold1219 GLEAN promoter 905180 906179 0.837482 - . ID=CGI_10024307; scaffold1219 GLEAN mRNA 907593 915676 0.999949 - . ID=CGI_10024309; scaffold1219 GLEAN promoter 915677 915739 0.999949 - . ID=CGI_10024309; scaffold122 GLEAN promoter 1956 2955 0.999949 + . ID=CGI_10011862; scaffold122 TRF Tandem_Repeat 2251 2322 90 + . . scaffold122 GLEAN mRNA 2956 11758 0.999949 + . ID=CGI_10011862; scaffold122 GLEAN mRNA 10940 18264 0.88992 - . ID=CGI_10011863; scaffold122 GLEAN promoter 17546 18545 1 + . ID=CGI_10011864; scaffold122 GLEAN promoter 18265 19264 0.88992 - . ID=CGI_10011863; scaffold122 GLEAN mRNA 18546 20586 1 + . ID=CGI_10011864; scaffold122 GLEAN promoter 22224 23223 0.785046 + . ID=CGI_10011865; scaffold122 GLEAN mRNA 23224 46340 0.785046 + . ID=CGI_10011865; scaffold122 TRF Tandem_Repeat 23622 23832 217 + . . scaffold122 TRF Tandem_Repeat 28060 28368 222 + . . scaffold122 TRF Tandem_Repeat 28081 28556 273 + . . scaffold122 TRF Tandem_Repeat 28085 28522 108 + . . scaffold122 TRF Tandem_Repeat 28090 28533 191 + . . scaffold122 TRF Tandem_Repeat 28257 28392 82 + . . scaffold122 TRF Tandem_Repeat 43135 43394 167 + . . scaffold122 TRF Tandem_Repeat 43160 43269 68 + . . scaffold122 WUBlastX LINE_RTE-X 46513 46689 25 - . . scaffold122 WUBlastX LINE_RTE-BovB 46572 46748 27 - . . scaffold122 WUBlastX LINE_RTE-BovB 46643 46945 52 - . . scaffold122 WUBlastX LINE_RTE-BovB 46712 46960 55 - . . scaffold122 WUBlastX LINE_RTE-BovB 46751 46960 116 - . . scaffold122 WUBlastX LINE_RTE-BovB 46952 47218 43 - . . scaffold122 WUBlastX LINE_RTE-BovB 47188 47640 108 - . . scaffold122 WUBlastX LINE_RTE-BovB 47533 47703 46 - . . scaffold122 WUBlastX LINE_RTE-BovB 48335 48562 58 - . . scaffold122 WUBlastX LINE_RTE-BovB 48413 48559 74 - . . scaffold122 WUBlastX LINE_RTE-RTE 48413 48625 45 - . . scaffold122 WUBlastX LINE_RTE-BovB 48643 48861 52 - . . scaffold122 WUBlastX LINE_RTE-BovB 48682 48885 90 - . . scaffold122 WUBlastX LINE_RTE-BovB 48881 49039 25 - . . scaffold122 WUBlastX DNA_TcMar-Tc1 53512 53562 31 - . . scaffold122 WUBlastX DNA_TcMar-Tc1 53559 54542 355 - . . scaffold122 GLEAN mRNA 63437 68849 0.648346 - . ID=CGI_10011866; scaffold122 GLEAN promoter 68850 69849 0.648346 - . ID=CGI_10011866; scaffold122 GLEAN promoter 93422 94421 0.836214 + . ID=CGI_10011867; scaffold122 GLEAN mRNA 94422 98666 0.836214 + . ID=CGI_10011867; scaffold122 GLEAN mRNA 103115 120768 0.665437 - . ID=CGI_10011868; scaffold122 GLEAN promoter 120010 121009 0.999764 + . ID=CGI_10011869; scaffold122 GLEAN promoter 120769 121768 0.665437 - . ID=CGI_10011868; scaffold122 GLEAN mRNA 121010 126376 0.999764 + . ID=CGI_10011869; scaffold122 TRF Tandem_Repeat 122955 122996 84 + . . scaffold122 TRF Tandem_Repeat 127209 127699 937 + . . scaffold122 GLEAN promoter 131737 132736 0.999675 + . ID=CGI_10011870; scaffold122 GLEAN mRNA 132737 140180 0.999675 + . ID=CGI_10011870; scaffold122 TRF Tandem_Repeat 135236 135288 106 + . . scaffold122 GLEAN mRNA 149120 150926 1 - . ID=CGI_10011871; scaffold122 GLEAN promoter 150927 151926 1 - . ID=CGI_10011871; scaffold122 GLEAN mRNA 157814 158971 0.994631 - . ID=CGI_10011872; scaffold122 GLEAN promoter 158972 159971 0.994631 - . ID=CGI_10011872; scaffold122 GLEAN promoter 161258 162257 0.999661 + . ID=CGI_10011873; scaffold122 GLEAN mRNA 162258 163643 0.999661 + . ID=CGI_10011873; scaffold122 TRF Tandem_Repeat 167765 167809 90 + . . scaffold122 TRF Tandem_Repeat 171324 171387 92 + . . scaffold122 GLEAN mRNA 173511 175794 0.545737 - . ID=CGI_10011874; scaffold122 GLEAN promoter 175795 176794 0.545737 - . ID=CGI_10011874; scaffold122 TRF Tandem_Repeat 183480 183578 117 + . . scaffold122 TRF Tandem_Repeat 196300 196334 70 + . . scaffold122 GLEAN mRNA 200218 205888 0.99996 - . ID=CGI_10011875; scaffold122 TRF Tandem_Repeat 202354 202599 375 + . . scaffold122 TRF Tandem_Repeat 203937 203983 94 + . . scaffold122 GLEAN promoter 205889 206888 0.99996 - . ID=CGI_10011875; scaffold122 GLEAN promoter 206183 207182 1 + . ID=CGI_10011876; scaffold122 WUBlastX LTR_Gypsy 206736 206909 90 + . . scaffold122 WUBlastX LTR_Gypsy 206742 206972 89 + . . scaffold122 GLEAN mRNA 207183 212143 1 + . ID=CGI_10011876; scaffold122 GLEAN mRNA 215847 230855 1 - . ID=CGI_10011877; scaffold122 TRF Tandem_Repeat 219370 221056 1824 + . . scaffold122 TRF Tandem_Repeat 219374 221056 1834 + . . scaffold122 TRF Tandem_Repeat 220137 221335 1453 + . . scaffold122 TRF Tandem_Repeat 221054 221340 265 + . . scaffold122 TRF Tandem_Repeat 222576 223838 1035 + . . scaffold122 TRF Tandem_Repeat 225737 227572 2533 + . . scaffold122 GLEAN promoter 230856 231855 1 - . ID=CGI_10011877; scaffold122 GLEAN mRNA 233639 235810 0.999668 - . ID=CGI_10011878; scaffold122 GLEAN promoter 235811 236810 0.999668 - . ID=CGI_10011878; scaffold122 WUBlastX LINE_RTE-X 237853 240240 743 + . . scaffold122 WUBlastX LINE_RTE-X 240366 240833 51 + . . scaffold122 WUBlastX LINE_RTE-X 240432 240686 75 + . . scaffold122 WUBlastX LINE_RTE-X 240516 240815 63 + . . scaffold122 GLEAN mRNA 244436 248648 0.999534 - . ID=CGI_10011879; scaffold122 TRF Tandem_Repeat 246994 247028 70 + . . scaffold122 GLEAN promoter 248649 249648 0.999534 - . ID=CGI_10011879; scaffold122 WUBlastX DNA_Kolobok 253462 253647 32 + . . scaffold122 WUBlastX DNA_Kolobok 253906 254034 31 + . . scaffold122 WUBlastX DNA_Kolobok 253957 254043 52 + . . scaffold122 WUBlastX DNA_Kolobok 254577 254654 27 - . . scaffold122 WUBlastX DNA_Kolobok 254659 254784 29 - . . scaffold122 WUBlastX DNA_Kolobok 254835 254996 79 - . . scaffold122 GLEAN mRNA 255059 255627 0.999999 - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255083 255343 94 - . . scaffold122 WUBlastX DNA_Kolobok 255466 255651 114 - . . scaffold122 GLEAN promoter 255628 256627 0.999999 - . ID=CGI_10011880; scaffold122 WUBlastX DNA_Kolobok 255976 256515 123 - . . scaffold1220 TRF Tandem_Repeat 2146 2185 80 + . . scaffold1220 GLEAN mRNA 15876 16991 0.999984 - . ID=CGI_10006797; scaffold1220 GLEAN promoter 16992 17991 0.999984 - . ID=CGI_10006797; scaffold1220 GLEAN mRNA 17071 20049 1 - . ID=CGI_10006798; scaffold1220 TRF Tandem_Repeat 17455 17506 97 + . . scaffold1220 GLEAN promoter 17650 18649 0.650854 + . ID=CGI_10006799; scaffold1220 TRF Tandem_Repeat 17701 17733 66 + . . scaffold1220 GLEAN mRNA 18650 31156 0.650854 + . ID=CGI_10006799; scaffold1220 TRF Tandem_Repeat 19693 19760 127 + . . scaffold1220 GLEAN promoter 20050 21049 1 - . ID=CGI_10006798; scaffold1220 TRF Tandem_Repeat 20411 20448 76 + . . scaffold1220 GLEAN mRNA 32393 34402 0.738573 - . ID=CGI_10006800; scaffold1220 TRF Tandem_Repeat 32753 32790 76 + . . scaffold1220 GLEAN promoter 34403 35402 0.738573 - . ID=CGI_10006800; scaffold1220 WUBlastX LINE_L2 36644 37114 147 - . . scaffold1220 WUBlastX LINE_L2 37083 38588 1092 - . . scaffold1220 GLEAN mRNA 67006 71348 0.99949 - . ID=CGI_10006801; scaffold1220 TRF Tandem_Repeat 68880 68915 72 + . . scaffold1220 GLEAN promoter 71349 72348 0.99949 - . ID=CGI_10006801; scaffold1220 GLEAN promoter 79146 80145 0.999676 + . ID=CGI_10006802; scaffold1220 GLEAN mRNA 80146 83792 0.999676 + . ID=CGI_10006802; scaffold1220 GLEAN mRNA 85285 93245 0.999675 - . ID=CGI_10006803; scaffold1220 TRF Tandem_Repeat 92299 92326 56 + . . scaffold1220 TRF Tandem_Repeat 92433 92481 98 + . . scaffold1220 TRF Tandem_Repeat 92551 92614 103 + . . scaffold1220 GLEAN promoter 92746 93745 0.999676 + . ID=CGI_10006804; scaffold1220 GLEAN promoter 93246 94245 0.999675 - . ID=CGI_10006803; scaffold1220 GLEAN mRNA 93746 104501 0.999676 + . ID=CGI_10006804; scaffold1220 TRF Tandem_Repeat 98355 98827 795 + . . scaffold1220 TRF Tandem_Repeat 100708 100805 171 + . . scaffold1220 TRF Tandem_Repeat 101488 101573 108 + . . scaffold1220 TRF Tandem_Repeat 112718 112757 80 + . . scaffold1220 GLEAN mRNA 115317 117901 0.996151 - . ID=CGI_10006805; scaffold1220 GLEAN promoter 117902 118901 0.996151 - . ID=CGI_10006805; scaffold1220 GLEAN mRNA 131862 132401 1 - . ID=CGI_10006806; scaffold1220 GLEAN promoter 132402 133401 1 - . ID=CGI_10006806; scaffold1220 GLEAN mRNA 146002 146541 0.990832 - . ID=CGI_10006807; scaffold1220 GLEAN promoter 146542 147541 0.990832 - . ID=CGI_10006807; scaffold1220 TRF Tandem_Repeat 149887 149957 115 + . . scaffold1220 TRF Tandem_Repeat 150057 150142 145 + . . scaffold1220 GLEAN mRNA 150688 157902 1 - . ID=CGI_10006808; scaffold1220 TRF Tandem_Repeat 155678 155707 51 + . . scaffold1220 GLEAN promoter 157903 158902 1 - . ID=CGI_10006808; scaffold1220 TRF Tandem_Repeat 157914 157954 82 + . . scaffold1220 TRF Tandem_Repeat 158239 158314 152 + . . scaffold1220 TRF Tandem_Repeat 159218 159374 144 + . . scaffold1220 TRF Tandem_Repeat 161008 161090 107 + . . scaffold1221 GLEAN promoter 1 79 0.96941 + . ID=CGI_10019720; scaffold1221 GLEAN mRNA 80 4127 0.96941 + . ID=CGI_10019720; scaffold1221 GLEAN mRNA 6329 8222 0.996819 - . ID=CGI_10019721; scaffold1221 WUBlastX LTR_Gypsy 7928 8317 28 - . . scaffold1221 WUBlastX LTR_Gypsy 8048 8317 42 - . . scaffold1221 GLEAN promoter 8223 9222 0.996819 - . ID=CGI_10019721; scaffold1221 GLEAN promoter 10974 11973 0.998979 + . ID=CGI_10019722; scaffold1221 GLEAN mRNA 11974 25890 0.998979 + . ID=CGI_10019722; scaffold1221 TRF Tandem_Repeat 14010 14058 73 + . . scaffold1221 TRF Tandem_Repeat 17530 17569 80 + . . scaffold1221 TRF Tandem_Repeat 20290 20764 604 + . . scaffold1221 TRF Tandem_Repeat 20290 20764 604 + . . scaffold1221 TRF Tandem_Repeat 20290 20764 598 + . . scaffold1221 GLEAN mRNA 26402 31456 0.999999 - . ID=CGI_10019723; scaffold1221 GLEAN promoter 27507 28506 1 + . ID=CGI_10019724; scaffold1221 GLEAN mRNA 28507 30541 1 + . ID=CGI_10019724; scaffold1221 GLEAN promoter 31457 32456 0.999999 - . ID=CGI_10019723; scaffold1221 WUBlastX DNA_Kolobok 32915 33220 139 + . . scaffold1221 WUBlastX DNA_Kolobok 32951 33271 87 + . . scaffold1221 WUBlastX DNA_Kolobok 33742 33882 21 + . . scaffold1221 WUBlastX DNA_Kolobok 34262 34471 51 + . . scaffold1221 WUBlastX DNA_Kolobok 35092 35259 57 + . . scaffold1221 WUBlastX DNA_Kolobok 35392 35634 93 + . . scaffold1221 GLEAN mRNA 35728 35946 1 - . ID=CGI_10019725; scaffold1221 WUBlastX DNA_Kolobok 35746 35991 116 - . . scaffold1221 GLEAN promoter 35947 36946 1 - . ID=CGI_10019725; scaffold1221 TRF Tandem_Repeat 36064 36110 51 + . . scaffold1221 GLEAN mRNA 36763 37561 0.72876 - . ID=CGI_10019726; scaffold1221 GLEAN promoter 37562 38561 0.72876 - . ID=CGI_10019726; scaffold1221 WUBlastX LINE_CR1 37957 38121 25 + . . scaffold1221 WUBlastX LINE_RTE-X 38248 39465 201 + . . scaffold1221 WUBlastX LINE_RTE-X 38248 39003 230 + . . scaffold1221 WUBlastX LINE_RTE-X 38878 39582 42 + . . scaffold1221 WUBlastX LINE_RTE-X 39834 40790 354 + . . scaffold1221 TRF Tandem_Repeat 47574 48694 1202 + . . scaffold1221 TRF Tandem_Repeat 53356 53402 58 + . . scaffold1221 GLEAN promoter 55411 56410 0.696179 + . ID=CGI_10019728; scaffold1221 GLEAN mRNA 56411 69596 0.696179 + . ID=CGI_10019728; scaffold1221 TRF Tandem_Repeat 63630 63669 80 + . . scaffold1221 TRF Tandem_Repeat 64552 64620 63 + . . scaffold1221 WUBlastX RC_Helitron 64671 66413 656 + . . scaffold1221 WUBlastX DNA_Maverick 66662 67015 43 - . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 66770 67009 93 - . . scaffold1221 WUBlastX LTR_Gypsy 66955 67323 119 - . . scaffold1221 WUBlastX LTR_Gypsy 67015 67824 549 - . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 67805 68260 252 - . . scaffold1221 WUBlastX LTR_Gypsy 67901 68245 260 - . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 68253 69320 194 - . . scaffold1221 WUBlastX LTR_Gypsy 68253 68477 221 - . . scaffold1221 WUBlastX LTR_Gypsy 68256 68564 206 - . . scaffold1221 WUBlastX LTR_Gypsy 69153 69362 48 - . . scaffold1221 WUBlastX LTR_Gypsy 69329 69430 25 - . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 70797 71006 68 - . . scaffold1221 WUBlastX LTR_Gypsy-Cigr 71007 71192 63 - . . scaffold1221 GLEAN mRNA 74126 75628 1 - . ID=CGI_10019729; scaffold1221 GLEAN promoter 75629 76628 1 - . ID=CGI_10019729; scaffold1221 TRF Tandem_Repeat 75820 75876 114 + . . scaffold1221 TRF Tandem_Repeat 79205 79234 60 + . . scaffold1221 WUBlastX DNA_En-Spm 81310 81402 34 - . . scaffold1221 WUBlastX DNA_En-Spm 81408 81545 59 - . . scaffold1221 GLEAN mRNA 84840 95252 0.99967 - . ID=CGI_10019730; scaffold1221 WUBlastX LTR_Gypsy 86125 86205 84 + . . scaffold1221 WUBlastX DNA_MuDR 87952 88761 242 + . . scaffold1221 TRF Tandem_Repeat 90624 90664 82 + . . scaffold1221 WUBlastX LINE_RTE-X 93517 93927 94 + . . scaffold1221 GLEAN promoter 94692 95691 0.999996 + . ID=CGI_10019731; scaffold1221 GLEAN promoter 95253 96252 0.99967 - . ID=CGI_10019730; scaffold1221 GLEAN mRNA 95692 101444 0.999996 + . ID=CGI_10019731; scaffold1221 TRF Tandem_Repeat 99989 100046 116 + . . scaffold1221 GLEAN promoter 107945 108944 0.776736 + . ID=CGI_10019732; scaffold1221 GLEAN mRNA 108945 113501 0.776736 + . ID=CGI_10019732; scaffold1221 GLEAN promoter 117718 118717 0.999909 + . ID=CGI_10019733; scaffold1221 GLEAN mRNA 118718 130285 0.999909 + . ID=CGI_10019733; scaffold1221 GLEAN mRNA 132556 145664 0.698987 - . ID=CGI_10019734; scaffold1221 TRF Tandem_Repeat 133047 133077 62 + . . scaffold1221 TRF Tandem_Repeat 137038 137830 1201 + . . scaffold1221 GLEAN promoter 145665 146664 0.698987 - . ID=CGI_10019734; scaffold1221 TRF Tandem_Repeat 147256 147549 234 + . . scaffold1221 TRF Tandem_Repeat 147269 147498 199 + . . scaffold1221 TRF Tandem_Repeat 149123 149179 114 + . . scaffold1221 GLEAN mRNA 151480 161089 0.999154 - . ID=CGI_10019735; scaffold1221 GLEAN promoter 161090 162089 0.999154 - . ID=CGI_10019735; scaffold1221 TRF Tandem_Repeat 161808 161868 122 + . . scaffold1221 TRF Tandem_Repeat 162119 162423 308 + . . scaffold1221 TRF Tandem_Repeat 167166 167408 414 + . . scaffold1221 TRF Tandem_Repeat 169506 169532 54 + . . scaffold1221 TRF Tandem_Repeat 169531 169564 68 + . . scaffold1221 WUBlastX DNA_TcMar-Marin 172269 172331 32 - . . scaffold1221 WUBlastX DNA_TcMar-Marin 172402 172629 44 - . . scaffold1221 GLEAN mRNA 173457 177264 0.801242 - . ID=CGI_10019736; scaffold1221 TRF Tandem_Repeat 174204 174254 95 + . . scaffold1221 GLEAN promoter 177265 178264 0.801242 - . ID=CGI_10019736; scaffold1221 TRF Tandem_Repeat 182491 182534 61 + . . scaffold1221 WUBlastX LTR_DIRS 185655 186605 460 - . . scaffold1221 TRF Tandem_Repeat 194200 194583 301 + . . scaffold1221 TRF Tandem_Repeat 194274 194630 344 + . . scaffold1221 WUBlastX RC_Helitron 198839 199243 58 + . . scaffold1221 WUBlastX DNA_Harbinger 203095 203268 64 + . . scaffold1221 WUBlastX DNA_Harbinger 210540 211031 84 - . . scaffold1221 WUBlastX DNA_Harbinger 210666 211067 136 - . . scaffold1221 WUBlastX DNA_Zator 217578 217982 97 - . . scaffold1221 WUBlastX DNA_Zator 218164 218559 65 - . . scaffold1221 WUBlastX DNA_Zator 218236 219123 399 - . . scaffold1221 WUBlastX DNA_Zator 219129 219674 234 - . . scaffold1221 WUBlastX DNA_Zator 219650 219847 57 - . . scaffold1221 WUBlastX DNA_Zator 219925 220353 53 - . . scaffold1221 WUBlastX DNA_TcMar-Tc1 221870 221941 21 + . . scaffold1221 WUBlastX DNA_TcMar-Tc1 221946 222422 133 + . . scaffold1221 WUBlastX DNA_TcMar-Tc1 222556 222858 157 + . . scaffold1221 WUBlastX DNA_TcMar-Tc1 222577 222930 94 + . . scaffold1221 WUBlastX DNA_TcMar-Tc1 222837 223019 36 + . . scaffold1221 GLEAN mRNA 232615 238704 1 - . ID=CGI_10019737; scaffold1221 TRF Tandem_Repeat 237920 237958 78 + . . scaffold1221 GLEAN promoter 238705 239704 1 - . ID=CGI_10019737; scaffold1221 TRF Tandem_Repeat 241927 241972 92 + . . scaffold1221 TRF Tandem_Repeat 242818 242893 134 + . . scaffold1221 WUBlastX LINE_CR1-L2 246273 246311 25 + . . scaffold1221 WUBlastX LINE_L2 246875 247009 45 + . . scaffold1221 GLEAN mRNA 255576 256268 0.481546 - . ID=CGI_10019738; scaffold1221 GLEAN promoter 256269 257268 0.481546 - . ID=CGI_10019738; scaffold1221 TRF Tandem_Repeat 257203 257265 126 + . . scaffold1221 TRF Tandem_Repeat 257331 257380 100 + . . scaffold1221 GLEAN mRNA 259177 267824 0.734114 - . ID=CGI_10019739; scaffold1221 GLEAN promoter 267825 268824 0.734114 - . ID=CGI_10019739; scaffold1221 GLEAN mRNA 268383 268767 0.999572 - . ID=CGI_10019740; scaffold1221 GLEAN promoter 268768 269767 0.999572 - . ID=CGI_10019740; scaffold1221 GLEAN promoter 272641 273640 0.999998 + . ID=CGI_10019741; scaffold1221 GLEAN mRNA 273641 275485 0.999998 + . ID=CGI_10019741; scaffold1221 TRF Tandem_Repeat 283108 283156 98 + . . scaffold1221 TRF Tandem_Repeat 287404 287449 92 + . . scaffold1221 TRF Tandem_Repeat 289538 289576 78 + . . scaffold1221 TRF Tandem_Repeat 292075 292414 428 + . . scaffold1221 TRF Tandem_Repeat 292939 292991 106 + . . scaffold1221 GLEAN promoter 294053 295052 0.999196 + . ID=CGI_10019742; scaffold1221 GLEAN mRNA 295053 306727 0.999196 + . ID=CGI_10019742; scaffold1221 WUBlastX LINE_RTE-X 303478 303939 128 - . . scaffold1221 WUBlastX LINE_RTE-X 303511 303855 164 - . . scaffold1221 GLEAN promoter 306263 307262 0.888682 + . ID=CGI_10019743; scaffold1221 GLEAN mRNA 307263 319481 0.888682 + . ID=CGI_10019743; scaffold1221 GLEAN promoter 319684 320683 0.998804 + . ID=CGI_10019744; scaffold1221 GLEAN mRNA 320684 325059 0.998804 + . ID=CGI_10019744; scaffold1221 TRF Tandem_Repeat 320905 320931 54 + . . scaffold1221 TRF Tandem_Repeat 321018 321048 62 + . . scaffold1221 TRF Tandem_Repeat 352314 352371 82 + . . scaffold1221 GLEAN mRNA 352551 403939 0.753368 - . ID=CGI_10019745; scaffold1221 TRF Tandem_Repeat 382904 383001 169 + . . scaffold1221 WUBlastX LINE_L1 390034 390657 30 + . . scaffold1221 WUBlastX LINE_L1 390295 390630 87 + . . scaffold1221 WUBlastX LINE_L1-Tx1 390349 390708 163 + . . scaffold1221 WUBlastX LINE_L1-Tx1 390749 391723 85 + . . scaffold1221 GLEAN promoter 403940 404939 0.753368 - . ID=CGI_10019745; scaffold1221 GLEAN mRNA 404160 443117 0.999155 - . ID=CGI_10019746; scaffold1221 TRF Tandem_Repeat 417618 417654 67 + . . scaffold1221 TRF Tandem_Repeat 424386 424417 55 + . . scaffold1221 GLEAN promoter 443118 444117 0.999155 - . ID=CGI_10019746; scaffold1221 TRF Tandem_Repeat 445734 445776 52 + . . scaffold1221 WUBlastX LINE_RTE-X 445821 446825 258 - . . scaffold1221 WUBlastX LINE_RTE-X 446526 446933 28 - . . scaffold1221 TRF Tandem_Repeat 449723 449762 71 + . . scaffold1221 TRF Tandem_Repeat 455702 455732 62 + . . scaffold1221 TRF Tandem_Repeat 455730 455766 74 + . . scaffold1221 GLEAN promoter 461567 462566 0.937662 + . ID=CGI_10019747; scaffold1221 GLEAN mRNA 462567 464709 0.937662 + . ID=CGI_10019747; scaffold1221 TRF Tandem_Repeat 470059 470094 72 + . . scaffold1221 TRF Tandem_Repeat 485774 485798 50 + . . scaffold1221 TRF Tandem_Repeat 485798 485862 130 + . . scaffold1221 TRF Tandem_Repeat 487143 487262 124 + . . scaffold1221 TRF Tandem_Repeat 487146 487224 55 + . . scaffold1221 TRF Tandem_Repeat 490203 490247 54 + . . scaffold1221 TRF Tandem_Repeat 498898 498923 52 + . . scaffold1221 GLEAN mRNA 505287 514877 0.549954 - . ID=CGI_10019748; scaffold1221 WUBlastX DNA_PiggyBac 511087 511233 65 - . . scaffold1221 WUBlastX DNA_PiggyBac 511248 511319 22 - . . scaffold1221 WUBlastX DNA_PiggyBac 512102 512206 30 - . . scaffold1221 WUBlastX DNA_PiggyBac 512126 512206 37 - . . scaffold1221 WUBlastX DNA_PiggyBac 512554 512631 48 - . . scaffold1221 GLEAN promoter 514878 515877 0.549954 - . ID=CGI_10019748; scaffold1221 GLEAN promoter 521455 522454 0.967384 + . ID=CGI_10019749; scaffold1221 GLEAN mRNA 522455 543272 0.967384 + . ID=CGI_10019749; scaffold1221 WUBlastX LINE_L1-Tx1 523216 523650 166 + . . scaffold1221 WUBlastX LINE_L1-Tx1 523662 524054 93 + . . scaffold1221 WUBlastX LINE_L1-Tx1 523671 523994 115 + . . scaffold1221 TRF Tandem_Repeat 524067 524212 204 + . . scaffold1221 WUBlastX LINE_L1-Tx1 525935 526402 60 + . . scaffold1221 WUBlastX LINE_L1-Tx1 525965 526258 83 + . . scaffold1221 WUBlastX LINE_L1-Tx1 526417 526815 22 + . . scaffold1221 WUBlastX LINE_L1 526435 526656 36 + . . scaffold1221 TRF Tandem_Repeat 533421 533480 66 + . . scaffold1221 TRF Tandem_Repeat 535055 535099 90 + . . scaffold1221 WUBlastX LINE_RTE-X 549334 549870 30 + . . scaffold1221 WUBlastX LINE_RTE-X 549553 549948 140 + . . scaffold1221 WUBlastX LINE_RTE-X 549929 550099 37 + . . scaffold1221 TRF Tandem_Repeat 550109 550321 291 + . . scaffold1221 TRF Tandem_Repeat 550111 550327 290 + . . scaffold1221 TRF Tandem_Repeat 551007 551247 288 + . . scaffold1221 TRF Tandem_Repeat 551007 551245 253 + . . scaffold1221 WUBlastX LINE_RTE-X 551367 551486 55 + . . scaffold1221 WUBlastX LINE_RTE-X 551486 551629 27 + . . scaffold1221 GLEAN mRNA 554298 561651 0.999282 - . ID=CGI_10019750; scaffold1221 GLEAN promoter 561652 562651 0.999282 - . ID=CGI_10019750; scaffold1221 TRF Tandem_Repeat 582110 582153 88 + . . scaffold1221 TRF Tandem_Repeat 589753 589790 76 + . . scaffold1221 TRF Tandem_Repeat 590997 591039 86 + . . scaffold1221 WUBlastX LINE_RTE-X 592896 593006 73 - . . scaffold1221 WUBlastX LINE_L1 595472 595795 44 - . . scaffold1221 WUBlastX LINE_RTE-X 596612 596836 57 + . . scaffold1221 WUBlastX LINE_RTE-X 596612 596905 22 + . . scaffold1221 WUBlastX LINE_RTE-BovB 600356 600529 93 - . . scaffold1221 WUBlastX LINE_RTE-BovB 600514 601092 357 - . . scaffold1221 TRF Tandem_Repeat 603979 604036 73 + . . scaffold1221 TRF Tandem_Repeat 603990 604033 52 + . . scaffold1222 GLEAN promoter 1 35 1 + . ID=CGI_10016233; scaffold1222 GLEAN mRNA 36 5538 1 + . ID=CGI_10016233; scaffold1222 TRF Tandem_Repeat 6838 6895 82 + . . scaffold1222 GLEAN mRNA 19757 26446 1 - . ID=CGI_10016234; scaffold1222 TRF Tandem_Repeat 20382 20458 77 + . . scaffold1222 TRF Tandem_Repeat 20701 20727 54 + . . scaffold1222 TRF Tandem_Repeat 20771 20857 108 + . . scaffold1222 TRF Tandem_Repeat 20771 20857 95 + . . scaffold1222 TRF Tandem_Repeat 22035 22366 489 + . . scaffold1222 GLEAN promoter 26447 27446 1 - . ID=CGI_10016234; scaffold1222 TRF Tandem_Repeat 41383 41445 54 + . . scaffold1222 GLEAN promoter 48536 49535 1 + . ID=CGI_10016235; scaffold1222 TRF Tandem_Repeat 48623 48919 414 + . . scaffold1222 GLEAN mRNA 49536 51751 1 + . ID=CGI_10016235; scaffold1222 TRF Tandem_Repeat 58541 59103 844 + . . scaffold1222 TRF Tandem_Repeat 58541 59103 799 + . . scaffold1222 TRF Tandem_Repeat 62485 62623 226 + . . scaffold1222 GLEAN mRNA 68719 82791 0.648135 - . ID=CGI_10016236; scaffold1222 WUBlastX LINE_L2 75838 76413 146 + . . scaffold1222 WUBlastX LINE_L2 76181 76681 279 + . . scaffold1222 WUBlastX LINE_CR1-L2 76656 77159 181 + . . scaffold1222 WUBlastX LINE_L2 76707 77096 221 + . . scaffold1222 TRF Tandem_Repeat 77160 77260 63 + . . scaffold1222 GLEAN promoter 82792 83791 0.648135 - . ID=CGI_10016236; scaffold1222 TRF Tandem_Repeat 86342 86374 50 + . . scaffold1222 GLEAN mRNA 87309 92938 1 - . ID=CGI_10016237; scaffold1222 GLEAN promoter 92939 93938 1 - . ID=CGI_10016237; scaffold1222 WUBlastX DNA_TcMar-Tc1 129120 129473 52 + . . scaffold1222 WUBlastX DNA_TcMar-Tc1 129183 129473 86 + . . scaffold1222 WUBlastX DNA_TcMar-Tc1 129491 129838 107 + . . scaffold1222 WUBlastX DNA_TcMar-Tc1 129506 129937 70 + . . scaffold1222 GLEAN promoter 133214 134213 0.999999 + . ID=CGI_10016238; scaffold1222 GLEAN mRNA 134214 152280 0.999999 + . ID=CGI_10016238; scaffold1222 WUBlastX LINE_RTE-X 136384 136731 183 - . . scaffold1222 WUBlastX LINE_L2 136465 136788 41 - . . scaffold1222 WUBlastX LINE_RTE-X 136789 136980 165 - . . scaffold1222 TRF Tandem_Repeat 144056 144087 64 + . . scaffold1222 TRF Tandem_Repeat 150084 150122 78 + . . scaffold1222 WUBlastX LINE_L1 156384 157055 165 + . . scaffold1222 WUBlastX LINE_L1-Tx1 156781 157704 306 + . . scaffold1222 WUBlastX LINE_L1 156946 157734 456 + . . scaffold1222 WUBlastX LINE_L1 157000 157869 233 + . . scaffold1222 WUBlastX LINE_L1-Tx1 157036 157704 479 + . . scaffold1222 WUBlastX LINE_RTE-BovB 157126 158067 99 + . . scaffold1222 TRF Tandem_Repeat 166463 166488 52 + . . scaffold1222 GLEAN mRNA 170376 181243 0.738574 - . ID=CGI_10016239; scaffold1222 GLEAN promoter 181244 182243 0.738574 - . ID=CGI_10016239; scaffold1222 TRF Tandem_Repeat 181349 181404 112 + . . scaffold1222 GLEAN mRNA 181889 211274 0.999614 - . ID=CGI_10016240; scaffold1222 TRF Tandem_Repeat 190689 190730 84 + . . scaffold1222 WUBlastX LINE_CR1-L2 195533 196501 224 - . . scaffold1222 TRF Tandem_Repeat 202043 202081 78 + . . scaffold1222 TRF Tandem_Repeat 202590 202634 90 + . . scaffold1222 TRF Tandem_Repeat 204574 204645 137 + . . scaffold1222 TRF Tandem_Repeat 209704 209776 103 + . . scaffold1222 GLEAN promoter 211275 212274 0.999614 - . ID=CGI_10016240; scaffold1222 GLEAN mRNA 221945 228208 1 - . ID=CGI_10016241; scaffold1222 TRF Tandem_Repeat 226618 226799 136 + . . scaffold1222 TRF Tandem_Repeat 226621 226804 135 + . . scaffold1222 GLEAN promoter 228209 229208 1 - . ID=CGI_10016241; scaffold1222 TRF Tandem_Repeat 229212 229341 94 + . . scaffold1222 GLEAN mRNA 229401 248477 0.998196 - . ID=CGI_10016242; scaffold1222 TRF Tandem_Repeat 238784 238815 64 + . . scaffold1222 TRF Tandem_Repeat 242455 242488 68 + . . scaffold1222 GLEAN promoter 248478 249477 0.998196 - . ID=CGI_10016242; scaffold1222 TRF Tandem_Repeat 248954 249099 105 + . . scaffold1222 TRF Tandem_Repeat 248954 249099 111 + . . scaffold1222 TRF Tandem_Repeat 249946 250051 85 + . . scaffold1222 GLEAN promoter 252591 253590 0.66898 + . ID=CGI_10016243; scaffold1222 GLEAN mRNA 253591 268403 0.66898 + . ID=CGI_10016243; scaffold1222 TRF Tandem_Repeat 260945 260990 58 + . . scaffold1222 TRF Tandem_Repeat 265582 266442 1270 + . . scaffold1222 GLEAN promoter 272087 273086 0.999922 + . ID=CGI_10016244; scaffold1222 GLEAN mRNA 273087 282191 0.999922 + . ID=CGI_10016244; scaffold1222 TRF Tandem_Repeat 278884 279076 185 + . . scaffold1222 TRF Tandem_Repeat 280806 281120 351 + . . scaffold1222 GLEAN mRNA 286800 304394 1 - . ID=CGI_10016245; scaffold1222 TRF Tandem_Repeat 294272 294352 65 + . . scaffold1222 TRF Tandem_Repeat 295414 296363 1261 + . . scaffold1222 TRF Tandem_Repeat 296475 296518 79 + . . scaffold1222 TRF Tandem_Repeat 302046 302119 132 + . . scaffold1222 GLEAN promoter 303957 304956 0.923791 + . ID=CGI_10016246; scaffold1222 GLEAN promoter 304395 305394 1 - . ID=CGI_10016245; scaffold1222 GLEAN mRNA 304957 327237 0.923791 + . ID=CGI_10016246; scaffold1222 GLEAN mRNA 335576 335767 1 - . ID=CGI_10016247; scaffold1222 GLEAN promoter 335768 336767 1 - . ID=CGI_10016247; scaffold1222 GLEAN promoter 336753 337752 0.999603 + . ID=CGI_10016248; scaffold1222 GLEAN mRNA 337753 342388 0.999603 + . ID=CGI_10016248; scaffold1222 GLEAN mRNA 350384 350638 1 - . ID=CGI_10016249; scaffold1222 GLEAN promoter 350639 351638 1 - . ID=CGI_10016249; scaffold1222 GLEAN mRNA 351724 362896 0.999607 - . ID=CGI_10016250; scaffold1222 TRF Tandem_Repeat 360267 361298 1463 + . . scaffold1222 TRF Tandem_Repeat 361473 361514 59 + . . scaffold1222 GLEAN promoter 362897 363896 0.999607 - . ID=CGI_10016250; scaffold1222 TRF Tandem_Repeat 365971 365996 52 + . . scaffold1222 TRF Tandem_Repeat 369611 369725 83 + . . scaffold1222 TRF Tandem_Repeat 371312 371549 157 + . . scaffold1222 TRF Tandem_Repeat 371388 371549 175 + . . scaffold1222 TRF Tandem_Repeat 371864 372002 120 + . . scaffold1222 TRF Tandem_Repeat 372157 372780 684 + . . scaffold1222 TRF Tandem_Repeat 372184 372339 68 + . . scaffold1222 GLEAN mRNA 377825 378016 0.481188 - . ID=CGI_10016251; scaffold1222 GLEAN promoter 378017 379016 0.481188 - . ID=CGI_10016251; scaffold1222 TRF Tandem_Repeat 387727 387759 66 + . . scaffold1222 GLEAN promoter 399133 400132 0.499415 + . ID=CGI_10016252; scaffold1222 GLEAN mRNA 400133 408736 0.499415 + . ID=CGI_10016252; scaffold1222 TRF Tandem_Repeat 412141 414363 2904 + . . scaffold1222 TRF Tandem_Repeat 412834 414363 1966 + . . scaffold1222 TRF Tandem_Repeat 438785 438850 116 + . . scaffold1222 TRF Tandem_Repeat 438788 438849 72 + . . scaffold1222 GLEAN mRNA 441392 454325 0.921485 - . ID=CGI_10016253; scaffold1222 TRF Tandem_Repeat 447316 447574 355 + . . scaffold1222 TRF Tandem_Repeat 447316 447574 380 + . . scaffold1222 TRF Tandem_Repeat 450479 450531 56 + . . scaffold1222 TRF Tandem_Repeat 450498 450531 59 + . . scaffold1222 GLEAN promoter 454326 455325 0.921485 - . ID=CGI_10016253; scaffold1222 GLEAN promoter 455633 456632 1 + . ID=CGI_10016254; scaffold1222 GLEAN mRNA 456633 457370 1 + . ID=CGI_10016254; scaffold1223 GLEAN promoter 1 806 0.998023 + . ID=CGI_10000117; scaffold1223 GLEAN mRNA 807 2122 0.998023 + . ID=CGI_10000117; scaffold1224 GLEAN mRNA 107 775 0.639435 - . ID=CGI_10000027; scaffold1224 GLEAN promoter 776 1039 0.639435 - . ID=CGI_10000027; scaffold1225 GLEAN promoter 1 83 0.634443 + . ID=CGI_10000587; scaffold1225 GLEAN mRNA 84 6427 0.634443 + . ID=CGI_10000587; scaffold1226 TRF Tandem_Repeat 978 1164 56 + . . scaffold1226 TRF Tandem_Repeat 9408 9444 74 + . . scaffold1226 GLEAN promoter 13403 14402 0.702385 + . ID=CGI_10002681; scaffold1226 TRF Tandem_Repeat 14018 14087 97 + . . scaffold1226 TRF Tandem_Repeat 14018 14076 77 + . . scaffold1226 TRF Tandem_Repeat 14030 14087 64 + . . scaffold1226 GLEAN mRNA 14403 23712 0.702385 + . ID=CGI_10002681; scaffold1226 TRF Tandem_Repeat 16992 17201 171 + . . scaffold1226 TRF Tandem_Repeat 17071 17200 66 + . . scaffold1226 WUBlastX DNA_Crypton 19890 20225 99 + . . scaffold1226 WUBlastX LTR_DIRS 24122 24547 68 - . . scaffold1226 WUBlastX LTR_DIRS 24155 24472 87 - . . scaffold1226 WUBlastX LTR_DIRS 24441 24737 52 - . . scaffold1226 WUBlastX LINE_RTE-BovB 30308 31474 1002 - . . scaffold1226 WUBlastX LINE_L1 30935 31576 70 - . . scaffold1226 WUBlastX LTR_Ngaro 31922 32206 60 - . . scaffold1226 GLEAN mRNA 32404 37153 0.999547 - . ID=CGI_10002682; scaffold1226 WUBlastX DNA_hAT-Tip100 37139 37384 45 - . . scaffold1226 GLEAN promoter 37154 38153 0.999547 - . ID=CGI_10002682; scaffold1227 GLEAN mRNA 2069 3310 1 - . ID=CGI_10010046; scaffold1227 GLEAN promoter 3311 4310 1 - . ID=CGI_10010046; scaffold1227 TRF Tandem_Repeat 8290 8347 98 + . . scaffold1227 GLEAN mRNA 9079 28834 0.458408 - . ID=CGI_10010047; scaffold1227 TRF Tandem_Repeat 27223 27266 88 + . . scaffold1227 GLEAN promoter 28835 29834 0.458408 - . ID=CGI_10010047; scaffold1227 GLEAN mRNA 43416 60500 0.979682 - . ID=CGI_10010048; scaffold1227 GLEAN promoter 60501 61500 0.979682 - . ID=CGI_10010048; scaffold1227 TRF Tandem_Repeat 73319 73389 88 + . . scaffold1227 GLEAN promoter 74136 75135 0.841129 + . ID=CGI_10010049; scaffold1227 GLEAN mRNA 75136 87935 0.841129 + . ID=CGI_10010049; scaffold1227 TRF Tandem_Repeat 79197 79274 131 + . . scaffold1227 TRF Tandem_Repeat 84953 84987 70 + . . scaffold1227 GLEAN promoter 112510 113509 0.965908 + . ID=CGI_10010050; scaffold1227 GLEAN mRNA 113510 113905 0.965908 + . ID=CGI_10010050; scaffold1227 GLEAN mRNA 125342 139160 0.53592 - . ID=CGI_10010051; scaffold1227 TRF Tandem_Repeat 134597 134752 278 + . . scaffold1227 TRF Tandem_Repeat 134645 134983 298 + . . scaffold1227 TRF Tandem_Repeat 134734 135010 355 + . . scaffold1227 TRF Tandem_Repeat 137882 138064 330 + . . scaffold1227 GLEAN promoter 139161 140160 0.53592 - . ID=CGI_10010051; scaffold1227 TRF Tandem_Repeat 140987 141011 50 + . . scaffold1227 TRF Tandem_Repeat 147420 147515 147 + . . scaffold1227 TRF Tandem_Repeat 149829 149865 74 + . . scaffold1227 GLEAN mRNA 156543 157918 0.991247 - . ID=CGI_10010052; scaffold1227 GLEAN promoter 157919 158918 0.991247 - . ID=CGI_10010052; scaffold1227 GLEAN mRNA 160914 172198 0.881287 - . ID=CGI_10010053; scaffold1227 TRF Tandem_Repeat 162284 162346 108 + . . scaffold1227 TRF Tandem_Repeat 168645 168722 156 + . . scaffold1227 GLEAN promoter 172199 173198 0.881287 - . ID=CGI_10010053; scaffold1227 TRF Tandem_Repeat 187711 187761 102 + . . scaffold1227 WUBlastX DNA_IS4EU 188425 189375 127 + . . scaffold1227 WUBlastX DNA_IS4EU 188863 189375 128 + . . scaffold1227 GLEAN mRNA 195691 199359 0.988892 - . ID=CGI_10010054; scaffold1227 GLEAN promoter 199009 200008 0.776248 + . ID=CGI_10010055; scaffold1227 GLEAN promoter 199360 200359 0.988892 - . ID=CGI_10010054; scaffold1227 GLEAN mRNA 200009 200269 0.776248 + . ID=CGI_10010055; scaffold1227 TRF Tandem_Repeat 201210 201262 70 + . . scaffold1227 TRF Tandem_Repeat 201211 201262 50 + . . scaffold1227 WUBlastX DNA_Harbinger 202742 202855 131 + . . scaffold1227 WUBlastX DNA_Harbinger 202968 203102 31 + . . scaffold1227 WUBlastX DNA_Harbinger 202968 203078 54 + . . scaffold1227 WUBlastX DNA_Harbinger 203168 203410 90 + . . scaffold1227 WUBlastX DNA_Harbinger 203198 203380 126 + . . scaffold1227 WUBlastX DNA_Harbinger 203478 203672 49 + . . scaffold1227 GLEAN promoter 208453 209452 0.982351 + . ID=CGI_10010056; scaffold1227 GLEAN mRNA 209453 211287 0.982351 + . ID=CGI_10010056; scaffold1227 WUBlastX DNA_Kolobok-Hyd 209851 209913 33 + . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210238 210393 21 + . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210250 210369 40 + . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210463 211035 43 + . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210601 211017 50 + . . scaffold1227 WUBlastX DNA_Kolobok-Hyd 210664 211233 65 + . . scaffold1227 WUBlastX LINE_L2 214733 214885 40 + . . scaffold1227 WUBlastX LINE_L2 214855 215124 115 + . . scaffold1227 WUBlastX LINE_L2 215133 215882 105 + . . scaffold1227 GLEAN mRNA 222181 224702 1 - . ID=CGI_10010057; scaffold1227 GLEAN promoter 224703 225702 1 - . ID=CGI_10010057; scaffold1227 GLEAN mRNA 226459 228736 0.99995 - . ID=CGI_10010058; scaffold1227 GLEAN promoter 228737 229736 0.99995 - . ID=CGI_10010058; scaffold1227 GLEAN mRNA 229067 232861 0.99995 - . ID=CGI_10010059; scaffold1227 GLEAN promoter 232862 233861 0.99995 - . ID=CGI_10010059; scaffold1227 GLEAN promoter 235048 236047 0.381561 + . ID=CGI_10010060; scaffold1227 GLEAN mRNA 236048 237910 0.381561 + . ID=CGI_10010060; scaffold1227 WUBlastX LINE_CR1 243895 244287 138 + . . scaffold1227 WUBlastX LINE_CR1 244317 244547 39 + . . scaffold1227 WUBlastX LINE_L1-Tx1 245137 248601 1041 + . . scaffold1227 GLEAN promoter 249554 250553 1 + . ID=CGI_10010061; scaffold1227 GLEAN mRNA 250554 251558 1 + . ID=CGI_10010061; scaffold1228 TRF Tandem_Repeat 654 1736 1498 + . . scaffold1228 GLEAN promoter 6010 7009 0.998387 + . ID=CGI_10016976; scaffold1228 GLEAN mRNA 7010 7705 0.998387 + . ID=CGI_10016976; scaffold1228 GLEAN promoter 7362 8361 0.990524 + . ID=CGI_10016977; scaffold1228 GLEAN mRNA 8362 14095 0.990524 + . ID=CGI_10016977; scaffold1228 TRF Tandem_Repeat 10954 10988 52 + . . scaffold1228 GLEAN promoter 22058 23057 0.997233 + . ID=CGI_10016978; scaffold1228 GLEAN mRNA 23058 32529 0.997233 + . ID=CGI_10016978; scaffold1228 TRF Tandem_Repeat 26045 26541 167 + . . scaffold1228 GLEAN promoter 35864 36863 0.999826 + . ID=CGI_10016979; scaffold1228 GLEAN mRNA 36864 38500 0.999826 + . ID=CGI_10016979; scaffold1228 WUBlastX LINE_L2 43650 43853 58 + . . scaffold1228 WUBlastX LINE_L2 43822 44028 34 + . . scaffold1228 WUBlastX LINE_RTE-BovB 47375 47665 34 - . . scaffold1228 WUBlastX LINE_RTE-BovB 47423 48235 320 - . . scaffold1228 WUBlastX LINE_RTE-X 48209 48691 138 - . . scaffold1228 WUBlastX LINE_RTE-BovB 48320 49597 560 - . . scaffold1228 GLEAN promoter 52070 53069 0.999676 + . ID=CGI_10016980; scaffold1228 GLEAN mRNA 53070 56517 0.999676 + . ID=CGI_10016980; scaffold1228 GLEAN mRNA 56070 63234 0.279262 - . ID=CGI_10016981; scaffold1228 TRF Tandem_Repeat 56127 56310 260 + . . scaffold1228 GLEAN promoter 62127 63126 0.794389 + . ID=CGI_10016982; scaffold1228 GLEAN mRNA 63127 71313 0.794389 + . ID=CGI_10016982; scaffold1228 GLEAN promoter 63235 64234 0.279262 - . ID=CGI_10016981; scaffold1228 TRF Tandem_Repeat 80124 80344 124 + . . scaffold1228 TRF Tandem_Repeat 80126 80344 167 + . . scaffold1228 TRF Tandem_Repeat 80432 80522 94 + . . scaffold1228 TRF Tandem_Repeat 80660 80758 82 + . . scaffold1228 WUBlastX LTR_DIRS 82236 82562 211 + . . scaffold1228 WUBlastX LTR_DIRS 82257 82691 207 + . . scaffold1228 WUBlastX LTR_DIRS 83179 84090 547 + . . scaffold1228 GLEAN mRNA 85977 87338 0.777723 - . ID=CGI_10016983; scaffold1228 GLEAN promoter 87339 88338 0.777723 - . ID=CGI_10016983; scaffold1228 TRF Tandem_Repeat 88572 88658 69 + . . scaffold1228 WUBlastX LTR_DIRS 88702 89235 353 + . . scaffold1228 TRF Tandem_Repeat 90098 90149 104 + . . scaffold1228 TRF Tandem_Repeat 97471 97520 64 + . . scaffold1228 TRF Tandem_Repeat 97474 97649 50 + . . scaffold1228 TRF Tandem_Repeat 97605 97631 54 + . . scaffold1228 TRF Tandem_Repeat 99960 100013 108 + . . scaffold1228 TRF Tandem_Repeat 118397 118730 483 + . . scaffold1228 TRF Tandem_Repeat 124722 124766 90 + . . scaffold1228 TRF Tandem_Repeat 130262 130289 56 + . . scaffold1228 TRF Tandem_Repeat 131315 131353 78 + . . scaffold1228 GLEAN promoter 135030 136029 1 + . ID=CGI_10016984; scaffold1228 GLEAN mRNA 136030 136866 1 + . ID=CGI_10016984; scaffold1228 TRF Tandem_Repeat 146398 146480 166 + . . scaffold1228 TRF Tandem_Repeat 150007 150068 115 + . . scaffold1228 TRF Tandem_Repeat 151887 151950 78 + . . scaffold1228 WUBlastX LINE_RTE-BovB 152814 153140 134 + . . scaffold1228 WUBlastX DNA_TcMar-Marin 154314 154400 24 + . . scaffold1228 WUBlastX DNA_TcMar-Marin 154490 154702 36 + . . scaffold1228 WUBlastX DNA_TcMar-Marin 154496 154663 64 + . . scaffold1228 GLEAN promoter 171602 172601 1 + . ID=CGI_10016985; scaffold1228 GLEAN mRNA 172602 173480 1 + . ID=CGI_10016985; scaffold1228 TRF Tandem_Repeat 183006 183042 74 + . . scaffold1228 TRF Tandem_Repeat 185032 185290 102 + . . scaffold1228 GLEAN mRNA 187609 187902 0.407083 - . ID=CGI_10016986; scaffold1228 GLEAN promoter 187903 188902 0.407083 - . ID=CGI_10016986; scaffold1228 TRF Tandem_Repeat 188573 188606 59 + . . scaffold1228 TRF Tandem_Repeat 189237 189366 235 + . . scaffold1228 GLEAN mRNA 204571 206567 0.992086 - . ID=CGI_10016987; scaffold1228 GLEAN promoter 206568 207567 0.992086 - . ID=CGI_10016987; scaffold1228 TRF Tandem_Repeat 226641 226715 123 + . . scaffold1228 TRF Tandem_Repeat 227012 227053 68 + . . scaffold1228 TRF Tandem_Repeat 227013 227050 51 + . . scaffold1228 GLEAN promoter 227394 228393 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 228055 228236 230 + . . scaffold1228 GLEAN mRNA 228394 247686 0.734404 + . ID=CGI_10016988; scaffold1228 TRF Tandem_Repeat 229552 229606 110 + . . scaffold1228 TRF Tandem_Repeat 236968 237041 85 + . . scaffold1228 TRF Tandem_Repeat 238894 239651 663 + . . scaffold1228 TRF Tandem_Repeat 238894 239973 634 + . . scaffold1228 TRF Tandem_Repeat 238894 239973 736 + . . scaffold1228 TRF Tandem_Repeat 238898 239642 501 + . . scaffold1228 TRF Tandem_Repeat 238910 239954 658 + . . scaffold1228 TRF Tandem_Repeat 239690 239973 187 + . . scaffold1228 TRF Tandem_Repeat 245074 245312 379 + . . scaffold1228 TRF Tandem_Repeat 247732 247955 335 + . . scaffold1228 TRF Tandem_Repeat 247736 247955 388 + . . scaffold1228 TRF Tandem_Repeat 251708 251738 53 + . . scaffold1228 TRF Tandem_Repeat 251953 252867 1143 + . . scaffold1228 TRF Tandem_Repeat 254423 254738 215 + . . scaffold1228 TRF Tandem_Repeat 254423 254569 125 + . . scaffold1228 TRF Tandem_Repeat 254823 254967 191 + . . scaffold1228 TRF Tandem_Repeat 254836 254967 153 + . . scaffold1228 TRF Tandem_Repeat 254837 254947 74 + . . scaffold1228 GLEAN mRNA 258260 260088 0.999999 - . ID=CGI_10016989; scaffold1228 GLEAN promoter 260089 261088 0.999999 - . ID=CGI_10016989; scaffold1228 GLEAN mRNA 260115 269157 0.999673 - . ID=CGI_10016990; scaffold1228 GLEAN promoter 269158 270157 0.999673 - . ID=CGI_10016990; scaffold1228 TRF Tandem_Repeat 270030 270062 66 + . . scaffold1228 GLEAN promoter 270640 271639 1 + . ID=CGI_10016991; scaffold1228 GLEAN mRNA 271640 271981 1 + . ID=CGI_10016991; scaffold1228 GLEAN promoter 274960 275959 0.981805 + . ID=CGI_10016992; scaffold1228 GLEAN mRNA 275960 280697 0.981805 + . ID=CGI_10016992; scaffold1228 TRF Tandem_Repeat 277592 277637 56 + . . scaffold1228 TRF Tandem_Repeat 277592 277648 51 + . . scaffold1228 GLEAN mRNA 303420 314860 0.999611 - . ID=CGI_10016993; scaffold1228 TRF Tandem_Repeat 304188 304213 52 + . . scaffold1228 GLEAN promoter 314861 315860 0.999611 - . ID=CGI_10016993; scaffold1228 TRF Tandem_Repeat 325443 326036 603 + . . scaffold1228 TRF Tandem_Repeat 329554 329587 52 + . . scaffold1228 TRF Tandem_Repeat 336984 337016 59 + . . scaffold1228 GLEAN mRNA 337747 337947 0.935104 - . ID=CGI_10016994; scaffold1228 GLEAN promoter 337948 338947 0.935104 - . ID=CGI_10016994; scaffold1228 GLEAN mRNA 338485 341733 0.832924 - . ID=CGI_10016995; scaffold1228 GLEAN promoter 341734 342733 0.832924 - . ID=CGI_10016995; scaffold1228 TRF Tandem_Repeat 344756 344931 275 + . . scaffold1228 TRF Tandem_Repeat 345818 345863 92 + . . scaffold1228 WUBlastX LINE_RTE-X 348059 348412 172 + . . scaffold1228 WUBlastX LINE_RTE-X 348101 348469 106 + . . scaffold1228 WUBlastX LINE_RTE-X 348167 348538 100 + . . scaffold1228 TRF Tandem_Repeat 354146 354210 121 + . . scaffold1228 TRF Tandem_Repeat 365485 365513 58 + . . scaffold1228 GLEAN promoter 368882 369881 0.999996 + . ID=CGI_10016997; scaffold1228 GLEAN mRNA 369882 373145 0.999996 + . ID=CGI_10016997; scaffold1228 TRF Tandem_Repeat 370051 370096 92 + . . scaffold1228 GLEAN mRNA 376218 390755 0.482439 - . ID=CGI_10016998; scaffold1228 TRF Tandem_Repeat 381455 381521 82 + . . scaffold1228 TRF Tandem_Repeat 381455 381521 98 + . . scaffold1228 GLEAN promoter 389520 390519 0.999063 + . ID=CGI_10016999; scaffold1228 GLEAN mRNA 390520 413066 0.999063 + . ID=CGI_10016999; scaffold1228 GLEAN promoter 390756 391755 0.482439 - . ID=CGI_10016998; scaffold1228 TRF Tandem_Repeat 400897 400938 84 + . . scaffold1228 TRF Tandem_Repeat 401873 401913 50 + . . scaffold1228 TRF Tandem_Repeat 402675 403314 784 + . . scaffold1228 TRF Tandem_Repeat 406322 406349 56 + . . scaffold1228 TRF Tandem_Repeat 410203 410633 300 + . . scaffold1228 TRF Tandem_Repeat 410203 410628 516 + . . scaffold1228 TRF Tandem_Repeat 410227 410633 404 + . . scaffold1228 TRF Tandem_Repeat 410235 410633 458 + . . scaffold1228 TRF Tandem_Repeat 419313 419416 145 + . . scaffold1228 GLEAN promoter 419565 420564 0.855336 + . ID=CGI_10017000; scaffold1228 GLEAN mRNA 420565 426177 0.855336 + . ID=CGI_10017000; scaffold1228 TRF Tandem_Repeat 426212 426257 58 + . . scaffold1228 GLEAN mRNA 427835 429105 0.999998 - . ID=CGI_10017001; scaffold1228 GLEAN promoter 429106 430105 0.999998 - . ID=CGI_10017001; scaffold1228 GLEAN promoter 430657 431656 1 + . ID=CGI_10017002; scaffold1228 GLEAN mRNA 431657 433457 1 + . ID=CGI_10017002; scaffold1228 TRF Tandem_Repeat 432923 432982 54 + . . scaffold1228 TRF Tandem_Repeat 434144 434184 73 + . . scaffold1228 GLEAN mRNA 435327 439305 1 - . ID=CGI_10017003; scaffold1228 GLEAN promoter 439306 440305 1 - . ID=CGI_10017003; scaffold1228 TRF Tandem_Repeat 447535 447573 78 + . . scaffold1228 GLEAN mRNA 449072 459843 1 - . ID=CGI_10017004; scaffold1228 TRF Tandem_Repeat 454435 455652 1729 + . . scaffold1228 TRF Tandem_Repeat 455814 455844 53 + . . scaffold1228 GLEAN promoter 459550 460549 0.593383 + . ID=CGI_10017005; scaffold1228 GLEAN promoter 459844 460843 1 - . ID=CGI_10017004; scaffold1228 GLEAN mRNA 460550 464452 0.593383 + . ID=CGI_10017005; scaffold1228 GLEAN mRNA 466655 478477 0.528865 - . ID=CGI_10017006; scaffold1228 TRF Tandem_Repeat 468724 468763 53 + . . scaffold1228 TRF Tandem_Repeat 473566 473636 79 + . . scaffold1228 WUBlastX LINE_CR1-L2 474911 475132 56 - . . scaffold1228 WUBlastX LINE_L2 475137 475901 398 - . . scaffold1228 WUBlastX LINE_L2 475840 476595 522 - . . scaffold1228 WUBlastX LINE_CR1-L2 475870 476808 410 - . . scaffold1228 WUBlastX LINE_L2 476604 476894 25 - . . scaffold1228 WUBlastX LINE_CR1-L2 476933 476995 31 - . . scaffold1228 WUBlastX LINE_RTE-X 477041 477736 165 - . . scaffold1228 GLEAN promoter 478478 479477 0.528865 - . ID=CGI_10017006; scaffold123 TRF Tandem_Repeat 940 1109 112 + . . scaffold123 TRF Tandem_Repeat 941 1109 203 + . . scaffold123 TRF Tandem_Repeat 1228 1340 145 + . . scaffold123 TRF Tandem_Repeat 1228 1471 172 + . . scaffold123 TRF Tandem_Repeat 1250 1328 59 + . . scaffold123 TRF Tandem_Repeat 1298 1477 121 + . . scaffold123 TRF Tandem_Repeat 1331 1477 159 + . . scaffold123 TRF Tandem_Repeat 1843 2531 778 + . . scaffold123 WUBlastX LTR_Gypsy 2851 3231 78 + . . scaffold123 WUBlastX LTR_Gypsy 2863 3177 117 + . . scaffold123 TRF Tandem_Repeat 9087 11022 2471 + . . scaffold123 WUBlastX LTR_Gypsy 12349 12684 49 + . . scaffold123 TRF Tandem_Repeat 13227 13292 132 + . . scaffold123 TRF Tandem_Repeat 15030 15070 73 + . . scaffold123 TRF Tandem_Repeat 15034 15070 56 + . . scaffold123 TRF Tandem_Repeat 15180 15238 109 + . . scaffold123 WUBlastX LTR_Gypsy-Troyk 38791 39294 145 + . . scaffold123 GLEAN mRNA 43722 56403 0.447664 - . ID=CGI_10011071; scaffold123 TRF Tandem_Repeat 54913 54952 53 + . . scaffold123 GLEAN promoter 56404 57403 0.447664 - . ID=CGI_10011071; scaffold123 WUBlastX DNA_TcMar-Tc1 56881 57078 21 + . . scaffold123 WUBlastX DNA_TcMar-Tc1 56911 57087 61 + . . scaffold123 WUBlastX DNA_TcMar-Tc1 57027 57509 111 + . . scaffold123 WUBlastX DNA_TcMar-Tc1 57374 57853 178 + . . scaffold123 WUBlastX DNA_TcMar-Tc1 57868 57942 25 + . . scaffold123 WUBlastX DNA_TcMar-Tc1 57886 57942 28 + . . scaffold123 TRF Tandem_Repeat 69752 69785 50 + . . scaffold123 TRF Tandem_Repeat 82625 82682 89 + . . scaffold123 TRF Tandem_Repeat 82993 83670 983 + . . scaffold123 TRF Tandem_Repeat 98739 98764 52 + . . scaffold123 WUBlastX DNA_Merlin 101138 101227 28 + . . scaffold123 WUBlastX DNA_Merlin 101165 101242 29 + . . scaffold123 WUBlastX DNA_Merlin 101184 101480 57 + . . scaffold123 WUBlastX DNA_Merlin 101274 101474 77 + . . scaffold123 WUBlastX DNA_Merlin 101313 101513 110 + . . scaffold123 WUBlastX DNA_Merlin 101325 101594 62 + . . scaffold123 WUBlastX DNA_Merlin 101325 101549 70 + . . scaffold123 GLEAN mRNA 103786 108168 1 - . ID=CGI_10011072; scaffold123 GLEAN promoter 108169 109168 1 - . ID=CGI_10011072; scaffold123 TRF Tandem_Repeat 108503 108553 102 + . . scaffold123 TRF Tandem_Repeat 108651 108727 154 + . . scaffold123 TRF Tandem_Repeat 109233 109277 90 + . . scaffold123 TRF Tandem_Repeat 109344 109398 65 + . . scaffold123 GLEAN mRNA 110922 114290 0.996632 - . ID=CGI_10011073; scaffold123 TRF Tandem_Repeat 112286 113203 635 + . . scaffold123 TRF Tandem_Repeat 112295 113109 853 + . . scaffold123 GLEAN promoter 114291 115290 0.996632 - . ID=CGI_10011073; scaffold123 GLEAN promoter 119594 120593 0.466419 + . ID=CGI_10011074; scaffold123 GLEAN mRNA 120594 138573 0.466419 + . ID=CGI_10011074; scaffold123 TRF Tandem_Repeat 127990 128065 152 + . . scaffold123 TRF Tandem_Repeat 129161 129196 72 + . . scaffold123 TRF Tandem_Repeat 130085 130218 124 + . . scaffold123 TRF Tandem_Repeat 130551 130580 51 + . . scaffold123 TRF Tandem_Repeat 134806 134858 106 + . . scaffold123 TRF Tandem_Repeat 139004 139115 77 + . . scaffold123 WUBlastX RC_Helitron 141241 142008 49 + . . scaffold123 WUBlastX RC_Helitron 141259 141879 66 + . . scaffold123 WUBlastX RC_Helitron 141292 142239 20 + . . scaffold123 WUBlastX RC_Helitron 143682 144479 437 + . . scaffold123 TRF Tandem_Repeat 150434 150527 75 + . . scaffold123 WUBlastX LINE_CR1-L2 151639 152259 21 + . . scaffold123 WUBlastX LINE_CR1-L2 151639 151980 94 + . . scaffold123 WUBlastX LINE_CR1-L2 151639 152160 67 + . . scaffold123 GLEAN promoter 155711 156710 0.544755 + . ID=CGI_10011075; scaffold123 TRF Tandem_Repeat 156493 156541 91 + . . scaffold123 GLEAN mRNA 156711 158571 0.544755 + . ID=CGI_10011075; scaffold123 TRF Tandem_Repeat 159969 160011 86 + . . scaffold123 TRF Tandem_Repeat 166702 166743 84 + . . scaffold123 WUBlastX LTR_Pao 184282 184443 42 + . . scaffold123 WUBlastX LTR_Pao 184427 185563 318 + . . scaffold123 WUBlastX LTR_Pao 184673 186295 708 + . . scaffold123 TRF Tandem_Repeat 213113 214691 1648 + . . scaffold123 TRF Tandem_Repeat 213113 214691 1863 + . . scaffold123 TRF Tandem_Repeat 213113 214691 1919 + . . scaffold123 TRF Tandem_Repeat 213902 213978 54 + . . scaffold123 GLEAN mRNA 214903 220342 1 - . ID=CGI_10011076; scaffold123 GLEAN promoter 220343 221342 1 - . ID=CGI_10011076; scaffold123 TRF Tandem_Repeat 224045 224091 94 + . . scaffold123 TRF Tandem_Repeat 234887 234911 50 + . . scaffold123 GLEAN promoter 236215 237214 1 + . ID=CGI_10011077; scaffold123 GLEAN mRNA 237215 238069 1 + . ID=CGI_10011077; scaffold123 TRF Tandem_Repeat 242007 242032 52 + . . scaffold123 WUBlastX DNA_Kolobok-Hyd 245315 245641 34 - . . scaffold123 TRF Tandem_Repeat 246115 246168 94 + . . scaffold123 TRF Tandem_Repeat 255889 255923 70 + . . scaffold123 TRF Tandem_Repeat 256229 256299 108 + . . scaffold123 TRF Tandem_Repeat 258568 258613 85 + . . scaffold123 TRF Tandem_Repeat 263084 263112 58 + . . scaffold123 TRF Tandem_Repeat 263289 263325 65 + . . scaffold123 GLEAN promoter 263816 264815 0.999372 + . ID=CGI_10011078; scaffold123 TRF Tandem_Repeat 263841 263907 62 + . . scaffold123 GLEAN mRNA 264816 265034 0.999372 + . ID=CGI_10011078; scaffold123 WUBlastX LTR_Gypsy 274980 276794 1054 - . . scaffold123 WUBlastX LTR_Gypsy 276802 276951 101 - . . scaffold123 WUBlastX LTR_Gypsy 276802 276915 120 - . . scaffold123 WUBlastX LTR_Gypsy 276975 277031 21 - . . scaffold123 WUBlastX LTR_Gypsy 277595 277735 30 - . . scaffold123 WUBlastX LTR_Gypsy 280138 280716 131 - . . scaffold123 WUBlastX LTR_Gypsy 280462 280788 134 - . . scaffold123 WUBlastX LTR_Gypsy 280667 281032 174 - . . scaffold123 WUBlastX LTR_Gypsy 280850 281128 59 - . . scaffold123 TRF Tandem_Repeat 281295 281329 70 + . . scaffold1230 TRF Tandem_Repeat 868 898 62 + . . scaffold1230 WUBlastX LINE_RTE-X 2765 2881 68 + . . scaffold1230 WUBlastX LINE_RTE-X 2765 3013 46 + . . scaffold1230 WUBlastX LINE_RTE-X 2765 2920 54 + . . scaffold1230 TRF Tandem_Repeat 4051 4084 68 + . . scaffold1230 GLEAN promoter 5081 6080 0.721334 + . ID=CGI_10004421; scaffold1230 GLEAN mRNA 6081 12982 0.721334 + . ID=CGI_10004421; scaffold1230 TRF Tandem_Repeat 13712 13747 72 + . . scaffold1230 TRF Tandem_Repeat 14450 14523 148 + . . scaffold1230 TRF Tandem_Repeat 17248 17282 70 + . . scaffold1230 GLEAN mRNA 21661 55599 0.55469 - . ID=CGI_10004422; scaffold1230 TRF Tandem_Repeat 26185 26921 818 + . . scaffold1230 TRF Tandem_Repeat 31546 31580 54 + . . scaffold1230 TRF Tandem_Repeat 32020 32052 66 + . . scaffold1230 TRF Tandem_Repeat 47984 48008 50 + . . scaffold1230 GLEAN promoter 55600 56599 0.55469 - . ID=CGI_10004422; scaffold1230 GLEAN mRNA 56388 93654 0.514803 - . ID=CGI_10004423; scaffold1230 GLEAN promoter 60857 61856 0.544345 + . ID=CGI_10004424; scaffold1230 GLEAN mRNA 61857 71757 0.544345 + . ID=CGI_10004424; scaffold1230 WUBlastX LINE_L1 63571 64017 72 + . . scaffold1230 WUBlastX LINE_L1-Tx1 63646 64101 384 + . . scaffold1230 TRF Tandem_Repeat 79294 79353 120 + . . scaffold1230 TRF Tandem_Repeat 82383 82446 92 + . . scaffold1230 GLEAN promoter 93655 94654 0.514803 - . ID=CGI_10004423; scaffold1230 WUBlastX DNA_TcMar-Tc1 93952 94137 33 + . . scaffold1230 WUBlastX DNA_TcMar-Tc1 93982 94218 34 + . . scaffold1230 WUBlastX DNA_TcMar-Tc1 94045 94263 41 + . . scaffold1230 WUBlastX DNA_TcMar-Tc1 94197 94370 46 + . . scaffold1230 WUBlastX DNA_TcMar-Tc1 94367 94495 31 + . . scaffold1231 GLEAN promoter 5549 6548 0.814894 + . ID=CGI_10004701; scaffold1231 GLEAN mRNA 6549 17827 0.814894 + . ID=CGI_10004701; scaffold1231 GLEAN promoter 21010 22009 0.489584 + . ID=CGI_10004702; scaffold1231 GLEAN mRNA 22010 47918 0.489584 + . ID=CGI_10004702; scaffold1231 TRF Tandem_Repeat 33634 33740 142 + . . scaffold1231 TRF Tandem_Repeat 35344 35489 94 + . . scaffold1231 TRF Tandem_Repeat 35399 35489 146 + . . scaffold1231 TRF Tandem_Repeat 51766 51792 54 + . . scaffold1231 TRF Tandem_Repeat 53748 53790 86 + . . scaffold1231 TRF Tandem_Repeat 54573 54607 54 + . . scaffold1231 TRF Tandem_Repeat 57690 57994 357 + . . scaffold1231 GLEAN promoter 78934 79933 0.93438 + . ID=CGI_10004703; scaffold1231 GLEAN mRNA 79934 107425 0.93438 + . ID=CGI_10004703; scaffold1231 TRF Tandem_Repeat 88666 88787 88 + . . scaffold1231 TRF Tandem_Repeat 92195 92375 105 + . . scaffold1231 TRF Tandem_Repeat 94085 94145 68 + . . scaffold1231 TRF Tandem_Repeat 94812 94842 62 + . . scaffold1231 TRF Tandem_Repeat 101050 101108 57 + . . scaffold1231 TRF Tandem_Repeat 101050 101108 75 + . . scaffold1231 WUBlastX LINE_RTE-BovB 105744 105995 65 + . . scaffold1231 WUBlastX LINE_RTE-BovB 105771 105983 152 + . . scaffold1231 WUBlastX LINE_RTE-BovB 106116 106328 74 + . . scaffold1231 WUBlastX LINE_RTE-BovB 106264 106434 36 + . . scaffold1231 WUBlastX LINE_RTE-BovB 106436 106615 57 + . . scaffold1232 TRF Tandem_Repeat 3427 3472 85 + . . scaffold1232 GLEAN mRNA 5122 19979 0.999676 - . ID=CGI_10014985; scaffold1232 GLEAN promoter 19980 20979 0.999676 - . ID=CGI_10014985; scaffold1232 TRF Tandem_Repeat 24563 24612 75 + . . scaffold1232 TRF Tandem_Repeat 42833 42868 63 + . . scaffold1232 TRF Tandem_Repeat 45394 45454 122 + . . scaffold1232 GLEAN promoter 46791 47790 0.777732 + . ID=CGI_10014986; scaffold1232 GLEAN mRNA 47791 52412 0.777732 + . ID=CGI_10014986; scaffold1232 GLEAN mRNA 53895 66601 0.999898 - . ID=CGI_10014987; scaffold1232 WUBlastX LTR_Ngaro 62393 62680 36 + . . scaffold1232 WUBlastX LTR_Ngaro 62444 62680 53 + . . scaffold1232 WUBlastX LTR_Ngaro 62525 62833 44 + . . scaffold1232 GLEAN promoter 66602 67601 0.999898 - . ID=CGI_10014987; scaffold1232 GLEAN mRNA 68601 72537 0.998976 - . ID=CGI_10014988; scaffold1232 GLEAN promoter 72538 73537 0.998976 - . ID=CGI_10014988; scaffold1232 GLEAN mRNA 73632 76680 0.777738 - . ID=CGI_10014989; scaffold1232 GLEAN promoter 76681 77680 0.777738 - . ID=CGI_10014989; scaffold1232 GLEAN mRNA 78037 85323 0.999991 - . ID=CGI_10014990; scaffold1232 GLEAN promoter 85324 86323 0.999991 - . ID=CGI_10014990; scaffold1232 GLEAN promoter 87779 88778 0.836236 + . ID=CGI_10014991; scaffold1232 GLEAN mRNA 88779 91708 0.836236 + . ID=CGI_10014991; scaffold1232 GLEAN mRNA 94120 105634 0.999676 - . ID=CGI_10014992; scaffold1232 GLEAN promoter 95278 96277 0.999973 + . ID=CGI_10014993; scaffold1232 GLEAN mRNA 96278 96785 0.999973 + . ID=CGI_10014993; scaffold1232 GLEAN promoter 98873 99872 0.998486 + . ID=CGI_10014994; scaffold1232 GLEAN mRNA 99873 102086 0.998486 + . ID=CGI_10014994; scaffold1232 GLEAN promoter 104682 105681 1 + . ID=CGI_10014995; scaffold1232 GLEAN promoter 105635 106634 0.999676 - . ID=CGI_10014992; scaffold1232 GLEAN mRNA 105682 109213 1 + . ID=CGI_10014995; scaffold1232 GLEAN mRNA 111345 113620 1 - . ID=CGI_10014996; scaffold1232 GLEAN promoter 113621 114620 1 - . ID=CGI_10014996; scaffold1232 TRF Tandem_Repeat 114418 114473 112 + . . scaffold1232 GLEAN mRNA 117082 159185 0.999672 - . ID=CGI_10014997; scaffold1232 TRF Tandem_Repeat 119442 119471 60 + . . scaffold1232 TRF Tandem_Repeat 125389 125741 253 + . . scaffold1232 TRF Tandem_Repeat 125389 125741 323 + . . scaffold1232 GLEAN promoter 130003 131002 0.536478 + . ID=CGI_10014998; scaffold1232 GLEAN mRNA 131003 138920 0.536478 + . ID=CGI_10014998; scaffold1232 GLEAN promoter 139451 140450 1 + . ID=CGI_10014999; scaffold1232 GLEAN mRNA 140451 160169 1 + . ID=CGI_10014999; scaffold1232 TRF Tandem_Repeat 157368 157405 67 + . . scaffold1232 GLEAN promoter 159186 160185 0.999672 - . ID=CGI_10014997; scaffold1232 GLEAN promoter 162586 163585 0.999998 + . ID=CGI_10015000; scaffold1232 GLEAN mRNA 163586 179875 0.999998 + . ID=CGI_10015000; scaffold1232 GLEAN mRNA 183428 187947 0.814149 - . ID=CGI_10015001; scaffold1232 GLEAN promoter 187948 188947 0.814149 - . ID=CGI_10015001; scaffold1232 GLEAN promoter 188903 189902 1 + . ID=CGI_10015002; scaffold1232 GLEAN mRNA 189903 191917 1 + . ID=CGI_10015002; scaffold1232 TRF Tandem_Repeat 190796 190830 70 + . . scaffold1232 GLEAN mRNA 192613 197178 1 - . ID=CGI_10015003; scaffold1232 GLEAN promoter 197179 198178 1 - . ID=CGI_10015003; scaffold1232 GLEAN promoter 197451 198450 1 + . ID=CGI_10015004; scaffold1232 GLEAN mRNA 198451 201556 1 + . ID=CGI_10015004; scaffold1232 WUBlastX LINE_RTE-X 207962 208183 69 + . . scaffold1232 WUBlastX LINE_RTE-X 208034 208216 97 + . . scaffold1232 TRF Tandem_Repeat 210969 210999 62 + . . scaffold1232 TRF Tandem_Repeat 212225 212285 106 + . . scaffold1232 GLEAN promoter 213766 214765 0.990262 + . ID=CGI_10015005; scaffold1232 GLEAN mRNA 214766 222918 0.990262 + . ID=CGI_10015005; scaffold1232 TRF Tandem_Repeat 217388 217418 53 + . . scaffold1232 TRF Tandem_Repeat 229805 229891 93 + . . scaffold1232 TRF Tandem_Repeat 229839 230081 133 + . . scaffold1232 WUBlastX DNA_IS4EU 252245 252667 20 - . . scaffold1232 WUBlastX DNA_Kolobok-IS4 252419 252667 45 - . . scaffold1232 TRF Tandem_Repeat 253591 253619 58 + . . scaffold1232 GLEAN mRNA 259401 259865 0.64255 - . ID=CGI_10015006; scaffold1232 GLEAN promoter 259866 260865 0.64255 - . ID=CGI_10015006; scaffold1232 TRF Tandem_Repeat 262365 262412 60 + . . scaffold1232 WUBlastX DNA_Crypton 289534 290058 87 + . . scaffold1232 GLEAN promoter 304046 305045 0.741648 + . ID=CGI_10015007; scaffold1232 GLEAN mRNA 305046 306986 0.741648 + . ID=CGI_10015007; scaffold1232 GLEAN promoter 306574 307573 0.370715 + . ID=CGI_10015008; scaffold1232 GLEAN mRNA 307574 309103 0.370715 + . ID=CGI_10015008; scaffold1232 TRF Tandem_Repeat 310463 310507 72 + . . scaffold1232 TRF Tandem_Repeat 312076 312138 63 + . . scaffold1232 TRF Tandem_Repeat 312092 312142 102 + . . scaffold1232 WUBlastX LTR_Pao 314721 315143 275 - . . scaffold1232 WUBlastX LTR_Pao 315143 316033 828 - . . scaffold1232 WUBlastX LTR_Pao 316128 316853 457 - . . scaffold1232 WUBlastX LTR_Pao 316835 317230 144 - . . scaffold1232 WUBlastX LTR_Pao 316868 317164 249 - . . scaffold1232 WUBlastX LTR_Pao 317137 317325 98 - . . scaffold1232 WUBlastX LTR_Pao 317328 318620 799 - . . scaffold1232 WUBlastX LTR_Pao 318244 319680 498 - . . scaffold1232 WUBlastX LTR_Pao 318601 319908 47 - . . scaffold1232 WUBlastX LTR_Gypsy 326465 326641 24 - . . scaffold1232 WUBlastX LTR_Ngaro 326510 328108 723 - . . scaffold1232 WUBlastX LTR_Ngaro 328128 328538 91 - . . scaffold1232 WUBlastX LTR_Ngaro 328531 328617 21 - . . scaffold1232 TRF Tandem_Repeat 334727 334849 176 + . . scaffold1232 TRF Tandem_Repeat 355321 355430 159 + . . scaffold1232 WUBlastX DNA_TcMar-Marin 363131 363535 243 - . . scaffold1232 WUBlastX DNA_TcMar-Marin 363724 364374 345 - . . scaffold1232 TRF Tandem_Repeat 364925 365636 837 + . . scaffold1232 TRF Tandem_Repeat 366431 366459 58 + . . scaffold1232 TRF Tandem_Repeat 367444 367587 139 + . . scaffold1232 TRF Tandem_Repeat 372369 372411 86 + . . scaffold1232 TRF Tandem_Repeat 372786 372823 76 + . . scaffold1232 WUBlastX LTR_Pao 375334 375453 35 + . . scaffold1232 WUBlastX LTR_Pao 375694 375906 40 + . . scaffold1232 WUBlastX LTR_Pao 375715 375888 62 + . . scaffold1232 WUBlastX LTR_Pao 375969 376856 87 + . . scaffold1232 WUBlastX LTR_Pao 376308 376904 149 + . . scaffold1232 TRF Tandem_Repeat 379983 380049 134 + . . scaffold1232 TRF Tandem_Repeat 380047 380078 64 + . . scaffold1232 TRF Tandem_Repeat 392772 393603 975 + . . scaffold1232 TRF Tandem_Repeat 393803 393844 66 + . . scaffold1232 TRF Tandem_Repeat 394366 394415 55 + . . scaffold1232 WUBlastX LINE_CR1-L2 401479 401724 27 + . . scaffold1232 WUBlastX LINE_CR1-L2 401581 401781 35 + . . scaffold1232 WUBlastX LINE_L2 401614 401721 58 + . . scaffold1232 WUBlastX LINE_L2 401647 401805 21 + . . scaffold1232 WUBlastX LINE_CR1-L2 401897 402436 26 + . . scaffold1232 WUBlastX LINE_CR1-L2 401993 402385 134 + . . scaffold1232 WUBlastX LINE_L2 402308 402406 30 + . . scaffold1232 WUBlastX LINE_L2 402412 402600 96 + . . scaffold1232 WUBlastX LINE_CR1-L2 402543 403844 161 + . . scaffold1232 WUBlastX LINE_CR1-L2 402597 403682 210 + . . scaffold1232 WUBlastX LINE_L2 402606 403436 291 + . . scaffold1232 WUBlastX LINE_CR1-L2 403844 404065 40 + . . scaffold1232 TRF Tandem_Repeat 404917 404947 53 + . . scaffold1232 TRF Tandem_Repeat 405089 405334 287 + . . scaffold1232 TRF Tandem_Repeat 405089 405335 310 + . . scaffold1232 GLEAN promoter 408711 409710 0.999999 + . ID=CGI_10015009; scaffold1232 TRF Tandem_Repeat 408794 408839 57 + . . scaffold1232 TRF Tandem_Repeat 408797 408838 50 + . . scaffold1232 GLEAN mRNA 409711 415850 0.999999 + . ID=CGI_10015009; scaffold1232 GLEAN mRNA 416340 418520 1 - . ID=CGI_10015010; scaffold1232 GLEAN promoter 418521 418697 1 - . ID=CGI_10015010; scaffold1233 GLEAN mRNA 818 16086 0.387616 - . ID=CGI_10003098; scaffold1233 TRF Tandem_Repeat 1172 1200 58 + . . scaffold1233 TRF Tandem_Repeat 6423 6670 424 + . . scaffold1233 WUBlastX LTR_Ngaro 7663 7875 119 - . . scaffold1233 WUBlastX LTR_Ngaro 7666 7947 66 - . . scaffold1233 WUBlastX DNA_IS4EU 11448 11573 35 + . . scaffold1233 WUBlastX DNA_IS4EU 12271 12381 31 + . . scaffold1233 WUBlastX DNA_IS4EU 12573 12803 90 + . . scaffold1233 WUBlastX DNA_IS4EU 13152 13433 170 - . . scaffold1233 WUBlastX DNA_IS4EU 13343 13570 120 - . . scaffold1233 TRF Tandem_Repeat 15831 15971 129 + . . scaffold1233 GLEAN promoter 16087 17086 0.387616 - . ID=CGI_10003098; scaffold1233 GLEAN promoter 17604 18603 1 + . ID=CGI_10003099; scaffold1233 GLEAN mRNA 18604 19240 1 + . ID=CGI_10003099; scaffold1233 GLEAN promoter 18878 19877 0.998095 + . ID=CGI_10003100; scaffold1233 GLEAN mRNA 19878 35245 0.998095 + . ID=CGI_10003100; scaffold1233 TRF Tandem_Repeat 36392 36490 164 + . . scaffold1233 GLEAN promoter 41848 42847 0.999998 + . ID=CGI_10003101; scaffold1233 GLEAN mRNA 42848 51364 0.999998 + . ID=CGI_10003101; scaffold1233 GLEAN promoter 50932 51931 0.991727 + . ID=CGI_10003102; scaffold1233 GLEAN mRNA 51932 56133 0.991727 + . ID=CGI_10003102; scaffold1233 WUBlastX DNA_TcMar-Tc1 59366 59452 29 - . . scaffold1233 WUBlastX DNA_TcMar-Tc1 59396 59452 42 - . . scaffold1233 WUBlastX DNA_TcMar-Tc1 59594 59653 42 - . . scaffold1233 TRF Tandem_Repeat 60515 60571 114 + . . scaffold1234 GLEAN mRNA 25172 26296 1 - . ID=CGI_10004511; scaffold1234 GLEAN promoter 26297 27296 1 - . ID=CGI_10004511; scaffold1234 GLEAN mRNA 44712 101400 0.366364 - . ID=CGI_10004512; scaffold1234 GLEAN promoter 57635 58634 1 + . ID=CGI_10004513; scaffold1234 GLEAN mRNA 58635 64156 1 + . ID=CGI_10004513; scaffold1234 GLEAN promoter 101401 101538 0.366364 - . ID=CGI_10004512; scaffold1235 GLEAN mRNA 3480 15135 0.990769 - . ID=CGI_10011827; scaffold1235 TRF Tandem_Repeat 5490 5538 89 + . . scaffold1235 TRF Tandem_Repeat 12351 12400 66 + . . scaffold1235 GLEAN promoter 15136 16135 0.990769 - . ID=CGI_10011827; scaffold1235 GLEAN mRNA 16837 34725 0.738057 - . ID=CGI_10011828; scaffold1235 TRF Tandem_Repeat 19420 19453 68 + . . scaffold1235 TRF Tandem_Repeat 19822 19884 101 + . . scaffold1235 GLEAN promoter 23706 24705 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 24589 25332 23 + . . scaffold1235 WUBlastX LTR_Gypsy 24706 26100 905 + . . scaffold1235 GLEAN mRNA 24706 26124 0.999999 + . ID=CGI_10011829; scaffold1235 WUBlastX LTR_Gypsy 26114 28954 2574 + . . scaffold1235 WUBlastX LTR_Gypsy 28457 29047 106 + . . scaffold1235 WUBlastX LINE_L1-Tx1 32897 33454 73 + . . scaffold1235 GLEAN promoter 34726 35725 0.738057 - . ID=CGI_10011828; scaffold1235 TRF Tandem_Repeat 37838 37924 147 + . . scaffold1235 TRF Tandem_Repeat 44781 44825 90 + . . scaffold1235 TRF Tandem_Repeat 47468 47730 246 + . . scaffold1235 TRF Tandem_Repeat 48723 48791 75 + . . scaffold1235 TRF Tandem_Repeat 52242 52373 110 + . . scaffold1235 GLEAN promoter 66950 67949 0.991373 + . ID=CGI_10011831; scaffold1235 GLEAN mRNA 67950 76689 0.991373 + . ID=CGI_10011831; scaffold1235 TRF Tandem_Repeat 75696 76051 536 + . . scaffold1235 TRF Tandem_Repeat 75696 76051 508 + . . scaffold1235 GLEAN mRNA 80520 86515 1 - . ID=CGI_10011832; scaffold1235 GLEAN promoter 86516 87515 1 - . ID=CGI_10011832; scaffold1235 GLEAN promoter 99102 100101 0.450725 + . ID=CGI_10011833; scaffold1235 GLEAN mRNA 100102 129172 0.450725 + . ID=CGI_10011833; scaffold1235 WUBlastX LINE_RTE-X 101177 101239 21 + . . scaffold1235 WUBlastX LINE_RTE-X 101863 102075 80 + . . scaffold1235 TRF Tandem_Repeat 117271 117315 90 + . . scaffold1235 TRF Tandem_Repeat 122610 122634 50 + . . scaffold1235 TRF Tandem_Repeat 127267 127323 89 + . . scaffold1235 TRF Tandem_Repeat 137246 137280 61 + . . scaffold1235 GLEAN promoter 138008 139007 0.479482 + . ID=CGI_10011834; scaffold1235 GLEAN mRNA 139008 140009 0.479482 + . ID=CGI_10011834; scaffold1235 TRF Tandem_Repeat 146078 146146 138 + . . scaffold1235 TRF Tandem_Repeat 148386 148452 134 + . . scaffold1235 TRF Tandem_Repeat 148720 148745 52 + . . scaffold1235 TRF Tandem_Repeat 151102 151145 88 + . . scaffold1235 GLEAN promoter 152933 153932 0.333189 + . ID=CGI_10011835; scaffold1235 GLEAN mRNA 153933 157581 0.333189 + . ID=CGI_10011835; scaffold1235 GLEAN mRNA 159432 170109 0.960098 - . ID=CGI_10011836; scaffold1235 WUBlastX LINE_L2 160641 160721 24 - . . scaffold1235 WUBlastX LINE_L2 160720 161097 29 - . . scaffold1235 GLEAN promoter 170110 171109 0.960098 - . ID=CGI_10011836; scaffold1235 GLEAN mRNA 172565 180021 1 - . ID=CGI_10011837; scaffold1235 GLEAN promoter 180022 181021 1 - . ID=CGI_10011837; scaffold1235 TRF Tandem_Repeat 185621 185684 128 + . . scaffold1235 GLEAN mRNA 185683 187114 0.998469 - . ID=CGI_10011838; scaffold1235 GLEAN promoter 187115 188114 0.998469 - . ID=CGI_10011838; scaffold1235 GLEAN mRNA 189277 190639 0.999424 - . ID=CGI_10011839; scaffold1235 GLEAN promoter 190640 191639 0.999424 - . ID=CGI_10011839; scaffold1235 GLEAN mRNA 191715 198503 0.999375 - . ID=CGI_10011840; scaffold1235 GLEAN promoter 198504 199503 0.999375 - . ID=CGI_10011840; scaffold1235 GLEAN mRNA 200033 200542 0.999999 - . ID=CGI_10011841; scaffold1235 GLEAN promoter 200543 201542 0.999999 - . ID=CGI_10011841; scaffold1235 TRF Tandem_Repeat 202041 202116 143 + . . scaffold1235 GLEAN mRNA 202418 208268 0.761513 - . ID=CGI_10011842; scaffold1235 TRF Tandem_Repeat 204413 204455 86 + . . scaffold1235 GLEAN promoter 208269 209268 0.761513 - . ID=CGI_10011842; scaffold1235 GLEAN mRNA 211805 213058 0.999479 - . ID=CGI_10011843; scaffold1235 GLEAN promoter 213059 214058 0.999479 - . ID=CGI_10011843; scaffold1235 GLEAN mRNA 214586 216975 0.39653 - . ID=CGI_10011844; scaffold1235 GLEAN promoter 216976 217975 0.39653 - . ID=CGI_10011844; scaffold1235 GLEAN mRNA 217162 218403 0.484475 - . ID=CGI_10011845; scaffold1235 GLEAN promoter 218404 219403 0.484475 - . ID=CGI_10011845; scaffold1235 GLEAN mRNA 222056 222343 0.999995 - . ID=CGI_10011846; scaffold1235 GLEAN promoter 222344 223343 0.999995 - . ID=CGI_10011846; scaffold1235 GLEAN mRNA 226070 233858 0.999963 - . ID=CGI_10011847; scaffold1235 GLEAN promoter 233859 234858 0.999963 - . ID=CGI_10011847; scaffold1235 TRF Tandem_Repeat 234669 234701 57 + . . scaffold1235 GLEAN mRNA 236201 241670 0.660868 - . ID=CGI_10011848; scaffold1235 GLEAN promoter 241671 242670 0.660868 - . ID=CGI_10011848; scaffold1235 GLEAN mRNA 245082 245928 0.991081 - . ID=CGI_10011849; scaffold1235 GLEAN promoter 245929 246928 0.991081 - . ID=CGI_10011849; scaffold1235 TRF Tandem_Repeat 247620 247674 110 + . . scaffold1235 GLEAN promoter 253127 254126 0.593348 + . ID=CGI_10011850; scaffold1235 GLEAN mRNA 254127 264096 0.593348 + . ID=CGI_10011850; scaffold1235 TRF Tandem_Repeat 270538 270591 108 + . . scaffold1235 TRF Tandem_Repeat 273907 273949 86 + . . scaffold1235 TRF Tandem_Repeat 275858 275896 60 + . . scaffold1235 GLEAN promoter 281403 282402 0.528485 + . ID=CGI_10011851; scaffold1235 GLEAN mRNA 282403 283695 0.528485 + . ID=CGI_10011851; scaffold1235 TRF Tandem_Repeat 293032 293057 52 + . . scaffold1235 TRF Tandem_Repeat 297510 297566 114 + . . scaffold1237 GLEAN mRNA 131 1266 0.776345 - . ID=CGI_10012790; scaffold1237 GLEAN promoter 1267 2266 0.776345 - . ID=CGI_10012790; scaffold1237 TRF Tandem_Repeat 1738 1847 65 + . . scaffold1237 TRF Tandem_Repeat 8647 8697 102 + . . scaffold1237 WUBlastX LINE_R2-Hero 9518 11092 427 + . . scaffold1237 GLEAN mRNA 12520 18350 1 - . ID=CGI_10012791; scaffold1237 TRF Tandem_Repeat 13704 13746 86 + . . scaffold1237 GLEAN promoter 18351 19350 1 - . ID=CGI_10012791; scaffold1237 GLEAN promoter 21633 22632 1 + . ID=CGI_10012792; scaffold1237 TRF Tandem_Repeat 21960 22013 108 + . . scaffold1237 GLEAN mRNA 22633 24816 1 + . ID=CGI_10012792; scaffold1237 TRF Tandem_Repeat 25111 25184 53 + . . scaffold1237 GLEAN promoter 29333 30332 1 + . ID=CGI_10012793; scaffold1237 GLEAN mRNA 30333 50698 1 + . ID=CGI_10012793; scaffold1237 TRF Tandem_Repeat 52968 53003 54 + . . scaffold1237 TRF Tandem_Repeat 54712 55862 1261 + . . scaffold1237 WUBlastX LINE_Penelope 57329 58039 78 - . . scaffold1237 WUBlastX LINE_Penelope 57722 58024 128 - . . scaffold1237 WUBlastX LINE_Penelope 58041 58157 26 - . . scaffold1237 WUBlastX LINE_Penelope 58089 58157 34 - . . scaffold1237 WUBlastX LTR_DIRS 58626 59249 121 + . . scaffold1237 WUBlastX LTR_DIRS 58755 59249 212 + . . scaffold1237 WUBlastX LTR_DIRS 59258 59632 185 + . . scaffold1237 WUBlastX LTR_DIRS 59635 59874 146 + . . scaffold1237 WUBlastX LTR_DIRS 59644 60021 114 + . . scaffold1237 WUBlastX LTR_DIRS 59939 60424 274 + . . scaffold1237 WUBlastX LTR_DIRS 60664 60810 52 + . . scaffold1237 WUBlastX LTR_DIRS 60818 61267 154 + . . scaffold1237 TRF Tandem_Repeat 64063 64872 798 + . . scaffold1237 TRF Tandem_Repeat 72352 72410 118 + . . scaffold1237 WUBlastX DNA_PiggyBac 86790 86954 57 - . . scaffold1237 TRF Tandem_Repeat 93395 94197 1151 + . . scaffold1237 TRF Tandem_Repeat 93395 94197 1124 + . . scaffold1237 WUBlastX DNA_En-Spm 100006 100548 24 + . . scaffold1237 WUBlastX DNA_En-Spm 100006 100455 67 + . . scaffold1237 TRF Tandem_Repeat 102009 102044 54 + . . scaffold1237 WUBlastX LTR_Gypsy 109122 109421 20 - . . scaffold1237 WUBlastX LTR_Gypsy-Cigr 109188 109592 138 - . . scaffold1237 WUBlastX LTR_Gypsy-Cigr 109555 110295 226 - . . scaffold1237 WUBlastX LTR_Gypsy 110384 110476 24 - . . scaffold1237 WUBlastX LTR_Gypsy 110616 111023 135 - . . scaffold1237 WUBlastX LTR_Gypsy 110691 111065 175 - . . scaffold1237 WUBlastX LTR_Gypsy-Cigr 110763 111062 266 - . . scaffold1237 WUBlastX LTR_Gypsy 110769 111128 199 - . . scaffold1237 TRF Tandem_Repeat 117944 117977 50 + . . scaffold1237 GLEAN mRNA 135445 139418 0.799413 - . ID=CGI_10012794; scaffold1237 TRF Tandem_Repeat 136410 136700 357 + . . scaffold1237 GLEAN promoter 139419 140418 0.799413 - . ID=CGI_10012794; scaffold1237 TRF Tandem_Repeat 142479 142700 198 + . . scaffold1237 TRF Tandem_Repeat 146080 146301 214 + . . scaffold1237 TRF Tandem_Repeat 150390 150427 58 + . . scaffold1237 TRF Tandem_Repeat 181199 181759 779 + . . scaffold1237 GLEAN promoter 195351 196350 0.593383 + . ID=CGI_10012795; scaffold1237 GLEAN mRNA 196351 198113 0.593383 + . ID=CGI_10012795; scaffold1237 GLEAN promoter 200980 201979 0.126918 + . ID=CGI_10012796; scaffold1237 GLEAN mRNA 201980 293560 0.126918 + . ID=CGI_10012796; scaffold1237 WUBlastX LINE_L1-Tx1 204780 205073 51 + . . scaffold1237 WUBlastX LINE_L1-Tx1 204858 205070 98 + . . scaffold1237 WUBlastX LTR_Gypsy 222155 222307 20 - . . scaffold1237 WUBlastX LTR_Gypsy 222452 223138 50 - . . scaffold1237 WUBlastX LTR_Gypsy 222557 223474 182 - . . scaffold1237 WUBlastX LTR_Gypsy 223030 224421 112 - . . scaffold1237 WUBlastX LTR_Gypsy 223708 224433 282 - . . scaffold1237 WUBlastX LTR_Gypsy 224046 225794 291 - . . scaffold1237 WUBlastX LTR_Gypsy 224433 225776 430 - . . scaffold1237 WUBlastX LTR_Gypsy 225806 225997 117 - . . scaffold1237 WUBlastX LTR_Gypsy 225997 226269 148 - . . scaffold1237 TRF Tandem_Repeat 229313 229366 72 + . . scaffold1237 WUBlastX LTR_Gypsy 258132 258368 28 + . . scaffold1237 WUBlastX LTR_Gypsy 258252 258395 21 + . . scaffold1237 WUBlastX LTR_Gypsy 258559 259305 46 + . . scaffold1237 WUBlastX LTR_Gypsy 258676 259491 48 + . . scaffold1237 WUBlastX LTR_DIRS 258904 261156 662 + . . scaffold1237 WUBlastX LTR_DIRS 258907 260229 741 + . . scaffold1237 WUBlastX LTR_DIRS 261173 261391 101 + . . scaffold1237 WUBlastX LTR_DIRS 261182 261442 78 + . . scaffold1237 TRF Tandem_Repeat 275198 275226 58 + . . scaffold1237 TRF Tandem_Repeat 279976 280023 51 + . . scaffold1237 TRF Tandem_Repeat 281430 281572 108 + . . scaffold1237 TRF Tandem_Repeat 281571 281783 98 + . . scaffold1237 WUBlastX LTR_Gypsy 296970 297938 172 + . . scaffold1237 WUBlastX LTR_Gypsy 297135 297989 759 + . . scaffold1237 GLEAN mRNA 298697 320745 0.728658 - . ID=CGI_10012797; scaffold1237 TRF Tandem_Repeat 298978 299019 84 + . . scaffold1237 GLEAN promoter 310829 311828 0.618022 + . ID=CGI_10012798; scaffold1237 GLEAN mRNA 311829 312314 0.618022 + . ID=CGI_10012798; scaffold1237 TRF Tandem_Repeat 314864 315137 147 + . . scaffold1237 TRF Tandem_Repeat 315008 315137 145 + . . scaffold1237 TRF Tandem_Repeat 317171 317837 1077 + . . scaffold1237 GLEAN promoter 320746 321745 0.728658 - . ID=CGI_10012797; scaffold1237 TRF Tandem_Repeat 322660 322707 96 + . . scaffold1237 TRF Tandem_Repeat 325647 325678 64 + . . scaffold1237 TRF Tandem_Repeat 331625 331668 88 + . . scaffold1237 GLEAN promoter 334085 335084 0.996788 + . ID=CGI_10012799; scaffold1237 GLEAN mRNA 335085 336044 0.996788 + . ID=CGI_10012799; scaffold1237 TRF Tandem_Repeat 336393 336424 64 + . . scaffold1238 GLEAN mRNA 778 1968 0.82852 - . ID=CGI_10000090; scaffold1238 GLEAN promoter 1969 1990 0.82852 - . ID=CGI_10000090; scaffold1240 GLEAN mRNA 497 3005 0.836195 - . ID=CGI_10001128; scaffold1240 GLEAN promoter 3006 4005 0.836195 - . ID=CGI_10001128; scaffold1241 GLEAN promoter 1 450 0.999415 + . ID=CGI_10016414; scaffold1241 GLEAN mRNA 451 5544 0.999415 + . ID=CGI_10016414; scaffold1241 TRF Tandem_Repeat 796 845 73 + . . scaffold1241 GLEAN promoter 7816 8815 1 + . ID=CGI_10016415; scaffold1241 GLEAN mRNA 8816 14142 1 + . ID=CGI_10016415; scaffold1241 TRF Tandem_Repeat 12119 12243 67 + . . scaffold1241 TRF Tandem_Repeat 12285 12478 199 + . . scaffold1241 TRF Tandem_Repeat 12310 12550 161 + . . scaffold1241 TRF Tandem_Repeat 12714 12763 100 + . . scaffold1241 TRF Tandem_Repeat 14355 14430 134 + . . scaffold1241 GLEAN mRNA 15912 18704 0.731355 - . ID=CGI_10016416; scaffold1241 GLEAN promoter 18705 19704 0.731355 - . ID=CGI_10016416; scaffold1241 GLEAN promoter 20350 21349 0.999676 + . ID=CGI_10016417; scaffold1241 GLEAN mRNA 21350 28363 0.999676 + . ID=CGI_10016417; scaffold1241 TRF Tandem_Repeat 27070 27111 57 + . . scaffold1241 TRF Tandem_Repeat 27070 27110 73 + . . scaffold1241 TRF Tandem_Repeat 29728 30669 1264 + . . scaffold1241 TRF Tandem_Repeat 31646 31824 65 + . . scaffold1241 GLEAN mRNA 33172 55862 0.858231 - . ID=CGI_10016418; scaffold1241 TRF Tandem_Repeat 33645 34603 684 + . . scaffold1241 TRF Tandem_Repeat 33663 34599 586 + . . scaffold1241 TRF Tandem_Repeat 33677 34599 638 + . . scaffold1241 TRF Tandem_Repeat 38238 38602 642 + . . scaffold1241 WUBlastX LTR_Gypsy 40479 42041 257 + . . scaffold1241 WUBlastX LTR_Gypsy 40728 44750 2062 + . . scaffold1241 WUBlastX LTR_DIRS 44709 44771 27 + . . scaffold1241 TRF Tandem_Repeat 52523 53147 911 + . . scaffold1241 GLEAN promoter 55863 56862 0.858231 - . ID=CGI_10016418; scaffold1241 TRF Tandem_Repeat 57217 57287 142 + . . scaffold1241 GLEAN promoter 60839 61838 0.789878 + . ID=CGI_10016419; scaffold1241 WUBlastX LINE_L2 61181 61420 54 - . . scaffold1241 GLEAN mRNA 61839 64018 0.789878 + . ID=CGI_10016419; scaffold1241 TRF Tandem_Repeat 65798 65831 68 + . . scaffold1241 GLEAN mRNA 65866 68593 0.921807 - . ID=CGI_10016420; scaffold1241 GLEAN promoter 68594 69593 0.921807 - . ID=CGI_10016420; scaffold1241 TRF Tandem_Repeat 68752 69244 799 + . . scaffold1241 TRF Tandem_Repeat 70425 70477 106 + . . scaffold1241 TRF Tandem_Repeat 71525 71562 76 + . . scaffold1241 TRF Tandem_Repeat 72129 72299 173 + . . scaffold1241 TRF Tandem_Repeat 76079 76120 84 + . . scaffold1241 GLEAN mRNA 76165 82592 0.439922 - . ID=CGI_10016421; scaffold1241 TRF Tandem_Repeat 76604 76635 64 + . . scaffold1241 TRF Tandem_Repeat 78145 78259 74 + . . scaffold1241 TRF Tandem_Repeat 78487 78580 50 + . . scaffold1241 TRF Tandem_Repeat 79074 79468 592 + . . scaffold1241 GLEAN promoter 81771 82770 0.589744 + . ID=CGI_10016422; scaffold1241 GLEAN promoter 82593 83592 0.439922 - . ID=CGI_10016421; scaffold1241 GLEAN mRNA 82771 83136 0.589744 + . ID=CGI_10016422; scaffold1241 GLEAN promoter 83310 84309 0.953907 + . ID=CGI_10016423; scaffold1241 TRF Tandem_Repeat 83553 83600 96 + . . scaffold1241 GLEAN mRNA 84310 86634 0.953907 + . ID=CGI_10016423; scaffold1241 TRF Tandem_Repeat 87949 88928 1433 + . . scaffold1241 TRF Tandem_Repeat 92096 92146 93 + . . scaffold1241 TRF Tandem_Repeat 94035 94088 90 + . . scaffold1241 GLEAN promoter 101217 102216 1 + . ID=CGI_10016424; scaffold1241 GLEAN mRNA 102217 103135 1 + . ID=CGI_10016424; scaffold1241 WUBlastX LTR_Ngaro 107422 107577 23 + . . scaffold1241 WUBlastX LINE_RTE-X 118814 119353 111 - . . scaffold1241 WUBlastX LINE_RTE-X 119356 120021 165 - . . scaffold1241 WUBlastX LINE_CR1-L2 119434 119997 182 - . . scaffold1241 WUBlastX LINE_RTE-BovB 119981 120100 42 - . . scaffold1241 WUBlastX LINE_RTE-X 119993 120208 32 - . . scaffold1241 WUBlastX DNA_hAT-hATw 126845 127672 76 + . . scaffold1241 GLEAN promoter 126939 127938 1 + . ID=CGI_10016425; scaffold1241 WUBlastX DNA_hAT-hATw 127085 127684 137 + . . scaffold1241 GLEAN mRNA 127939 130462 1 + . ID=CGI_10016425; scaffold1241 WUBlastX LTR_Ngaro 144993 145940 225 + . . scaffold1241 WUBlastX LTR_Ngaro 145789 146565 441 + . . scaffold1241 WUBlastX LTR_Ngaro 146582 146917 245 + . . scaffold1241 WUBlastX LTR_Ngaro 146845 147822 508 + . . scaffold1241 GLEAN promoter 147782 148781 0.321458 + . ID=CGI_10016426; scaffold1241 GLEAN mRNA 148782 154349 0.321458 + . ID=CGI_10016426; scaffold1241 TRF Tandem_Repeat 153294 153324 53 + . . scaffold1241 GLEAN mRNA 157809 158177 1 - . ID=CGI_10016427; scaffold1241 GLEAN promoter 158178 159177 1 - . ID=CGI_10016427; scaffold1241 GLEAN mRNA 158229 159365 0.555898 - . ID=CGI_10016428; scaffold1241 WUBlastX LTR_Gypsy 158256 158948 29 - . . scaffold1241 WUBlastX LTR_Gypsy-Cigr 158403 159107 189 - . . scaffold1241 WUBlastX LTR_Gypsy 158448 159257 85 - . . scaffold1241 GLEAN promoter 159366 160365 0.555898 - . ID=CGI_10016428; scaffold1241 GLEAN promoter 159405 160404 0.994492 + . ID=CGI_10016429; scaffold1241 GLEAN mRNA 160405 162946 0.994492 + . ID=CGI_10016429; scaffold1241 TRF Tandem_Repeat 164023 164047 50 + . . scaffold1241 WUBlastX LINE_L2 200166 201224 70 - . . scaffold1241 WUBlastX LINE_L2 200346 201251 299 - . . scaffold1241 WUBlastX LINE_CR1-L2 200346 200900 303 - . . scaffold1241 WUBlastX LINE_L2 202219 202449 39 - . . scaffold1241 WUBlastX LINE_L2 202219 202371 53 - . . scaffold1241 WUBlastX LINE_L1 206207 206329 47 - . . scaffold1241 WUBlastX LINE_L1-Tx1 206314 206556 28 - . . scaffold1241 WUBlastX LINE_L1-Tx1 206971 207105 30 - . . scaffold1241 WUBlastX LINE_L1-Tx1 207007 207099 35 - . . scaffold1241 WUBlastX LINE_L1-Tx1 207024 207371 63 - . . scaffold1241 WUBlastX LINE_L1-Tx1 207081 207356 76 - . . scaffold1241 WUBlastX LINE_L1 207391 207690 80 - . . scaffold1241 WUBlastX LINE_L1 207454 207690 120 - . . scaffold1241 WUBlastX LINE_L1-Tx1 207454 207759 71 - . . scaffold1241 WUBlastX LINE_L1 208288 208539 31 - . . scaffold1241 WUBlastX LINE_L1-Tx1 208383 208775 47 - . . scaffold1241 WUBlastX LINE_L1-Tx1 208383 208676 141 - . . scaffold1241 WUBlastX DNA_IS4EU 209089 209517 26 + . . scaffold1241 WUBlastX DNA_IS4EU 209806 210138 33 - . . scaffold1241 WUBlastX LINE_L1-Tx1 210372 210722 76 - . . scaffold1241 WUBlastX LINE_L1-Tx1 210468 210734 92 - . . scaffold1241 WUBlastX LINE_L1-Tx1 210763 211095 176 - . . scaffold1241 WUBlastX LINE_L1-Tx1 211034 211606 158 - . . scaffold1241 WUBlastX LINE_L1-Tx1 213759 214061 181 - . . scaffold1241 WUBlastX LINE_L2 214381 215103 97 - . . scaffold1241 TRF Tandem_Repeat 218414 218604 163 + . . scaffold1241 TRF Tandem_Repeat 218429 218710 155 + . . scaffold1241 TRF Tandem_Repeat 218633 218989 225 + . . scaffold1241 TRF Tandem_Repeat 218633 218989 232 + . . scaffold1241 TRF Tandem_Repeat 218907 219194 110 + . . scaffold1241 TRF Tandem_Repeat 219095 219260 124 + . . scaffold1241 GLEAN mRNA 221407 226561 0.999395 - . ID=CGI_10016430; scaffold1241 GLEAN promoter 226562 227561 0.999395 - . ID=CGI_10016430; scaffold1241 GLEAN mRNA 230364 272061 0.65035 - . ID=CGI_10016431; scaffold1241 TRF Tandem_Repeat 230854 230883 60 + . . scaffold1241 TRF Tandem_Repeat 245143 245211 72 + . . scaffold1241 TRF Tandem_Repeat 246129 246180 104 + . . scaffold1241 TRF Tandem_Repeat 248004 248040 74 + . . scaffold1241 TRF Tandem_Repeat 248271 248391 131 + . . scaffold1241 TRF Tandem_Repeat 255971 256024 74 + . . scaffold1241 WUBlastX LINE_RTE-X 260250 260366 29 + . . scaffold1241 WUBlastX LINE_RTE-X 260390 260518 50 + . . scaffold1241 WUBlastX LINE_RTE-X 260396 260545 34 + . . scaffold1241 GLEAN promoter 272062 273061 0.65035 - . ID=CGI_10016431; scaffold1241 GLEAN mRNA 278154 283109 1 - . ID=CGI_10016432; scaffold1241 GLEAN promoter 283110 284109 1 - . ID=CGI_10016432; scaffold1241 GLEAN promoter 286109 287108 1 + . ID=CGI_10016433; scaffold1241 GLEAN mRNA 287109 293365 1 + . ID=CGI_10016433; scaffold1241 GLEAN promoter 298725 299724 0.936059 + . ID=CGI_10016434; scaffold1241 GLEAN mRNA 299725 301209 0.936059 + . ID=CGI_10016434; scaffold1241 GLEAN mRNA 326666 326986 1 - . ID=CGI_10016435; scaffold1241 GLEAN promoter 326987 327986 1 - . ID=CGI_10016435; scaffold1241 GLEAN promoter 328086 329085 0.999796 + . ID=CGI_10016436; scaffold1241 GLEAN mRNA 329086 342003 0.999796 + . ID=CGI_10016436; scaffold1241 WUBlastX LINE_L1 330448 330513 25 + . . scaffold1241 WUBlastX LINE_L2 330764 330934 22 + . . scaffold1241 WUBlastX LINE_RTE-X 331492 332895 620 + . . scaffold1241 WUBlastX LINE_L1-Tx1 342127 343578 437 + . . scaffold1241 WUBlastX LINE_L1-Tx1 343574 343810 146 + . . scaffold1241 WUBlastX LINE_L1-Tx1 343785 345548 480 + . . scaffold1241 GLEAN mRNA 353077 389854 0.999576 - . ID=CGI_10016437; scaffold1241 TRF Tandem_Repeat 375158 375200 79 + . . scaffold1241 TRF Tandem_Repeat 386050 386122 128 + . . scaffold1241 GLEAN promoter 389855 390854 0.999576 - . ID=CGI_10016437; scaffold1241 GLEAN promoter 395712 396711 0.999351 + . ID=CGI_10016438; scaffold1241 GLEAN mRNA 396712 410533 0.999351 + . ID=CGI_10016438; scaffold1241 TRF Tandem_Repeat 410504 410804 514 + . . scaffold1241 WUBlastX LINE_RTE-X 413547 414107 33 - . . scaffold1241 WUBlastX LINE_RTE-X 413703 414092 46 - . . scaffold1241 WUBlastX LINE_RTE-X 413721 414161 33 - . . scaffold1241 GLEAN promoter 414093 415092 0.499912 + . ID=CGI_10016439; scaffold1241 WUBlastX LINE_RTE-X 414121 414378 25 - . . scaffold1241 GLEAN mRNA 415093 416079 0.499912 + . ID=CGI_10016439; scaffold1241 TRF Tandem_Repeat 416804 416828 50 + . . scaffold1241 TRF Tandem_Repeat 419162 419216 110 + . . scaffold1241 TRF Tandem_Repeat 419228 419403 142 + . . scaffold1241 TRF Tandem_Repeat 419228 419493 159 + . . scaffold1241 GLEAN mRNA 421748 426631 1 - . ID=CGI_10016440; scaffold1241 GLEAN promoter 426632 427631 1 - . ID=CGI_10016440; scaffold1241 GLEAN mRNA 434766 441384 0.999473 - . ID=CGI_10016441; scaffold1241 GLEAN promoter 441385 442384 0.999473 - . ID=CGI_10016441; scaffold1241 GLEAN mRNA 441426 445916 0.499221 - . ID=CGI_10016442; scaffold1241 GLEAN promoter 444238 445237 0.999749 + . ID=CGI_10016443; scaffold1241 GLEAN mRNA 445238 446833 0.999749 + . ID=CGI_10016443; scaffold1241 GLEAN promoter 445917 446916 0.499221 - . ID=CGI_10016442; scaffold1241 GLEAN promoter 449056 450055 0.999748 + . ID=CGI_10016444; scaffold1241 GLEAN mRNA 450056 457703 0.999748 + . ID=CGI_10016444; scaffold1241 GLEAN mRNA 459100 460389 0.776285 - . ID=CGI_10016445; scaffold1241 GLEAN promoter 460390 461389 0.776285 - . ID=CGI_10016445; scaffold1241 GLEAN mRNA 461330 461644 0.746248 - . ID=CGI_10016446; scaffold1241 GLEAN promoter 461645 462644 0.746248 - . ID=CGI_10016446; scaffold1241 GLEAN mRNA 461928 463060 0.749265 - . ID=CGI_10016447; scaffold1241 GLEAN promoter 463061 463977 0.749265 - . ID=CGI_10016447; scaffold1242 WUBlastX LINE_RTE-BovB 1555 1701 27 - . . scaffold1242 WUBlastX LINE_RTE-BovB 1644 1982 132 - . . scaffold1242 WUBlastX LINE_RTE-BovB 1668 2057 77 - . . scaffold1242 WUBlastX LINE_RTE-BovB 2049 2174 79 - . . scaffold1242 WUBlastX LINE_RTE-BovB 2156 2344 78 - . . scaffold1242 WUBlastX LINE_RTE-BovB 2284 2493 97 - . . scaffold1242 WUBlastX LINE_RTE-BovB 2499 2885 149 - . . scaffold1242 WUBlastX LINE_RTE-BovB 2505 2954 115 - . . scaffold1242 GLEAN promoter 2925 3924 1 + . ID=CGI_10000428; scaffold1242 WUBlastX LINE_RTE-BovB 2950 3285 35 - . . scaffold1242 GLEAN mRNA 3925 4806 1 + . ID=CGI_10000428; scaffold1243 GLEAN promoter 1 287 0.999654 + . ID=CGI_10000684; scaffold1243 GLEAN mRNA 288 8276 0.999654 + . ID=CGI_10000684; scaffold1244 TRF Tandem_Repeat 5415 5443 58 + . . scaffold1244 GLEAN promoter 8286 9285 0.999999 + . ID=CGI_10020816; scaffold1244 GLEAN mRNA 9286 31091 0.999999 + . ID=CGI_10020816; scaffold1244 TRF Tandem_Repeat 18161 18269 109 + . . scaffold1244 TRF Tandem_Repeat 37734 37800 134 + . . scaffold1244 TRF Tandem_Repeat 44577 44620 88 + . . scaffold1244 TRF Tandem_Repeat 44978 45013 63 + . . scaffold1244 TRF Tandem_Repeat 48158 48201 88 + . . scaffold1244 TRF Tandem_Repeat 50710 50786 154 + . . scaffold1244 TRF Tandem_Repeat 52911 52957 94 + . . scaffold1244 GLEAN promoter 53153 54152 1 + . ID=CGI_10020817; scaffold1244 TRF Tandem_Repeat 53600 53645 92 + . . scaffold1244 GLEAN mRNA 54153 56823 1 + . ID=CGI_10020817; scaffold1244 TRF Tandem_Repeat 59719 59769 102 + . . scaffold1244 TRF Tandem_Repeat 67367 67464 104 + . . scaffold1244 TRF Tandem_Repeat 67374 67466 140 + . . scaffold1244 TRF Tandem_Repeat 67769 67821 97 + . . scaffold1244 TRF Tandem_Repeat 71065 71115 93 + . . scaffold1244 GLEAN mRNA 78887 79225 0.6496 - . ID=CGI_10020818; scaffold1244 GLEAN promoter 79226 80225 0.6496 - . ID=CGI_10020818; scaffold1244 GLEAN promoter 80713 81712 1 + . ID=CGI_10020819; scaffold1244 GLEAN mRNA 81713 82090 1 + . ID=CGI_10020819; scaffold1244 WUBlastX DNA_TcMar-Tc1 85273 85344 26 + . . scaffold1244 WUBlastX DNA_TcMar-Tc1 85441 85635 67 + . . scaffold1244 GLEAN promoter 88223 89222 0.299139 + . ID=CGI_10020820; scaffold1244 GLEAN mRNA 89223 101617 0.299139 + . ID=CGI_10020820; scaffold1244 TRF Tandem_Repeat 92903 92935 66 + . . scaffold1244 WUBlastX LINE_L1 99417 99566 21 + . . scaffold1244 WUBlastX LINE_L1-Tx1 99456 99581 39 + . . scaffold1244 WUBlastX LINE_L1-Tx1 99486 99644 49 + . . scaffold1244 WUBlastX LINE_L1-Tx1 99539 99787 56 + . . scaffold1244 WUBlastX LINE_L1-Tx1 99599 99844 92 + . . scaffold1244 WUBlastX LINE_L1-Tx1 99832 100119 56 + . . scaffold1244 WUBlastX LINE_L1 99931 100122 61 + . . scaffold1244 WUBlastX LINE_L1 100098 100226 24 + . . scaffold1244 TRF Tandem_Repeat 100891 101167 527 + . . scaffold1244 TRF Tandem_Repeat 105148 105195 96 + . . scaffold1244 TRF Tandem_Repeat 105359 105387 58 + . . scaffold1244 TRF Tandem_Repeat 108849 108899 102 + . . scaffold1244 TRF Tandem_Repeat 108901 108942 66 + . . scaffold1244 GLEAN promoter 110686 111685 0.992073 + . ID=CGI_10020821; scaffold1244 GLEAN mRNA 111686 113332 0.992073 + . ID=CGI_10020821; scaffold1244 GLEAN promoter 120009 121008 0.646055 + . ID=CGI_10020823; scaffold1244 GLEAN mRNA 120848 121219 1 - . ID=CGI_10020822; scaffold1244 GLEAN mRNA 121009 134472 0.646055 + . ID=CGI_10020823; scaffold1244 GLEAN promoter 121220 122219 1 - . ID=CGI_10020822; scaffold1244 WUBlastX LTR_Gypsy 121992 122834 46 - . . scaffold1244 WUBlastX LTR_Gypsy 122136 123572 500 - . . scaffold1244 WUBlastX LTR_Gypsy 123309 123623 95 - . . scaffold1244 WUBlastX LTR_Gypsy 123312 123701 83 - . . scaffold1244 WUBlastX LTR_Gypsy 124425 124466 20 - . . scaffold1244 WUBlastX LTR_ERV1 124432 124518 28 - . . scaffold1244 WUBlastX LTR_Gypsy 124843 125334 140 - . . scaffold1244 WUBlastX LTR_Gypsy 124927 125337 376 - . . scaffold1244 WUBlastX LTR_Gypsy 125151 126143 520 - . . scaffold1244 WUBlastX LTR_Gypsy 125343 126143 886 - . . scaffold1244 WUBlastX LTR_Gypsy 126140 126520 231 - . . scaffold1244 WUBlastX LTR_Gypsy 126543 126998 162 - . . scaffold1244 WUBlastX LTR_Gypsy 126997 127155 80 - . . scaffold1244 WUBlastX LTR_Gypsy 127405 128175 110 - . . scaffold1244 WUBlastX LTR_Gypsy 127697 127909 125 - . . scaffold1244 WUBlastX LINE_RTE-X 136420 136680 76 - . . scaffold1244 WUBlastX LINE_RTE-X 136501 136716 91 - . . scaffold1244 WUBlastX LINE_RTE-X 136507 136866 78 - . . scaffold1244 WUBlastX LINE_RTE-X 136784 137143 59 - . . scaffold1244 WUBlastX LINE_L2 137137 137244 34 - . . scaffold1244 WUBlastX LINE_RTE-X 137149 137232 56 - . . scaffold1244 WUBlastX LINE_RTE-X 137247 137558 121 - . . scaffold1244 WUBlastX LINE_L1-Tx1 137434 138297 66 - . . scaffold1244 WUBlastX LINE_RTE-X 137698 138483 348 - . . scaffold1244 WUBlastX LINE_RTE-X 137710 139080 246 - . . scaffold1244 TRF Tandem_Repeat 142509 142583 150 + . . scaffold1244 WUBlastX LINE_RTE-X 145907 146122 54 + . . scaffold1244 GLEAN promoter 152621 153620 1 + . ID=CGI_10020824; scaffold1244 GLEAN mRNA 153621 155267 1 + . ID=CGI_10020824; scaffold1244 WUBlastX LINE_L1-Tx1 155603 156214 45 + . . scaffold1244 WUBlastX LINE_L1-Tx1 155759 156244 60 + . . scaffold1244 WUBlastX LINE_L1-Tx1 155849 156214 87 + . . scaffold1244 GLEAN promoter 159742 160741 0.589775 + . ID=CGI_10020825; scaffold1244 GLEAN promoter 160437 161436 0.99997 + . ID=CGI_10020826; scaffold1244 GLEAN mRNA 160742 161434 0.589775 + . ID=CGI_10020825; scaffold1244 GLEAN mRNA 161437 161988 0.99997 + . ID=CGI_10020826; scaffold1244 GLEAN mRNA 162851 163261 0.999991 - . ID=CGI_10020827; scaffold1244 GLEAN promoter 163262 164261 0.999991 - . ID=CGI_10020827; scaffold1244 WUBlastX LTR_Pao 163622 164086 34 - . . scaffold1244 WUBlastX LTR_Pao 163676 164044 92 - . . scaffold1244 WUBlastX LTR_Pao 163946 164467 23 - . . scaffold1244 WUBlastX LINE_RTE-X 166238 168031 872 + . . scaffold1244 WUBlastX LINE_RTE-X 168060 168386 139 + . . scaffold1244 TRF Tandem_Repeat 170319 170350 50 + . . scaffold1244 TRF Tandem_Repeat 173682 173843 211 + . . scaffold1244 TRF Tandem_Repeat 177650 177674 50 + . . scaffold1244 GLEAN mRNA 180003 180971 0.999999 - . ID=CGI_10020828; scaffold1244 GLEAN promoter 180972 181971 0.999999 - . ID=CGI_10020828; scaffold1244 WUBlastX LINE_L2 182728 183666 441 + . . scaffold1244 WUBlastX LINE_L2 183690 184403 202 + . . scaffold1244 TRF Tandem_Repeat 187179 187226 96 + . . scaffold1244 WUBlastX DNA_TcMar-Tc1 195010 195201 33 + . . scaffold1244 WUBlastX DNA_TcMar-Tc1 195221 195622 29 + . . scaffold1244 WUBlastX DNA_TcMar-Tc1 195295 195795 37 + . . scaffold1244 WUBlastX DNA_TcMar-Tc1 195430 195831 86 + . . scaffold1244 WUBlastX LINE_L1-Tx1 195805 196014 30 - . . scaffold1244 WUBlastX LINE_L1 195883 196017 43 - . . scaffold1244 WUBlastX LINE_L1 195916 196008 50 - . . scaffold1244 WUBlastX LINE_L1-Tx1 196026 196721 299 - . . scaffold1244 WUBlastX LINE_L1-Tx1 196726 196986 56 - . . scaffold1244 WUBlastX LINE_L1-Tx1 196936 197010 21 - . . scaffold1244 WUBlastX LINE_L1 197054 197917 83 - . . scaffold1244 WUBlastX LINE_L1 197231 197929 89 - . . scaffold1244 WUBlastX LINE_L1-Tx1 197342 197917 235 - . . scaffold1244 GLEAN mRNA 208455 210095 1 - . ID=CGI_10020829; scaffold1244 GLEAN promoter 210096 211095 1 - . ID=CGI_10020829; scaffold1244 TRF Tandem_Repeat 212517 212555 78 + . . scaffold1244 TRF Tandem_Repeat 217435 217493 118 + . . scaffold1244 WUBlastX LTR_DIRS 219942 220568 100 + . . scaffold1244 WUBlastX LTR_DIRS 220522 222255 764 + . . scaffold1244 TRF Tandem_Repeat 227529 227596 136 + . . scaffold1244 GLEAN promoter 233027 234026 0.557975 + . ID=CGI_10020830; scaffold1244 GLEAN mRNA 234027 249917 0.557975 + . ID=CGI_10020830; scaffold1244 TRF Tandem_Repeat 235485 235514 60 + . . scaffold1244 TRF Tandem_Repeat 250698 250915 259 + . . scaffold1244 TRF Tandem_Repeat 259990 260285 315 + . . scaffold1244 TRF Tandem_Repeat 259990 260285 309 + . . scaffold1244 TRF Tandem_Repeat 259990 260285 339 + . . scaffold1244 TRF Tandem_Repeat 275869 275893 50 + . . scaffold1244 TRF Tandem_Repeat 276932 276995 128 + . . scaffold1244 GLEAN promoter 278727 279726 0.999676 + . ID=CGI_10020831; scaffold1244 GLEAN mRNA 279727 285299 0.999676 + . ID=CGI_10020831; scaffold1244 TRF Tandem_Repeat 283255 283297 70 + . . scaffold1244 TRF Tandem_Repeat 287860 287913 108 + . . scaffold1244 TRF Tandem_Repeat 296128 296180 106 + . . scaffold1244 TRF Tandem_Repeat 310105 310320 306 + . . scaffold1244 GLEAN promoter 315228 316227 0.446078 + . ID=CGI_10020832; scaffold1244 GLEAN mRNA 316228 325470 0.446078 + . ID=CGI_10020832; scaffold1244 TRF Tandem_Repeat 318026 318123 56 + . . scaffold1244 TRF Tandem_Repeat 320211 320249 78 + . . scaffold1244 GLEAN promoter 325169 326168 1 + . ID=CGI_10020833; scaffold1244 TRF Tandem_Repeat 325927 326008 74 + . . scaffold1244 TRF Tandem_Repeat 326076 326135 61 + . . scaffold1244 GLEAN mRNA 326169 330232 1 + . ID=CGI_10020833; scaffold1244 TRF Tandem_Repeat 343770 343815 58 + . . scaffold1244 WUBlastX LTR_Ngaro 367448 368374 69 - . . scaffold1244 WUBlastX LTR_Ngaro 367646 368350 139 - . . scaffold1244 TRF Tandem_Repeat 371911 371952 66 + . . scaffold1244 GLEAN promoter 378428 379427 0.999372 + . ID=CGI_10020834; scaffold1244 TRF Tandem_Repeat 378836 378933 96 + . . scaffold1244 TRF Tandem_Repeat 379137 379259 52 + . . scaffold1244 TRF Tandem_Repeat 379145 379365 148 + . . scaffold1244 TRF Tandem_Repeat 379145 379268 64 + . . scaffold1244 GLEAN mRNA 379428 379613 0.999372 + . ID=CGI_10020834; scaffold1244 TRF Tandem_Repeat 379662 379701 80 + . . scaffold1244 TRF Tandem_Repeat 391700 391732 57 + . . scaffold1244 TRF Tandem_Repeat 395972 396139 196 + . . scaffold1244 TRF Tandem_Repeat 413605 413631 54 + . . scaffold1244 TRF Tandem_Repeat 427348 427520 154 + . . scaffold1244 TRF Tandem_Repeat 427530 427631 84 + . . scaffold1244 WUBlastX LINE_RTE-X 434757 434933 47 - . . scaffold1244 WUBlastX LTR_Ngaro 440028 440399 192 + . . scaffold1244 WUBlastX LTR_Ngaro 440085 440414 222 + . . scaffold1244 WUBlastX LTR_Ngaro 440348 441319 482 + . . scaffold1244 GLEAN mRNA 476935 490583 0.999988 - . ID=CGI_10020835; scaffold1244 GLEAN promoter 487192 488191 0.737996 + . ID=CGI_10020836; scaffold1244 GLEAN mRNA 488192 501756 0.737996 + . ID=CGI_10020836; scaffold1244 GLEAN promoter 490584 491583 0.999988 - . ID=CGI_10020835; scaffold1244 TRF Tandem_Repeat 490607 490648 59 + . . scaffold1244 GLEAN mRNA 502210 507888 0.728367 - . ID=CGI_10020837; scaffold1244 GLEAN promoter 507889 508888 0.728367 - . ID=CGI_10020837; scaffold1244 GLEAN mRNA 508938 634898 0.0392589 - . ID=CGI_10020838; scaffold1244 TRF Tandem_Repeat 543790 544193 538 + . . scaffold1244 TRF Tandem_Repeat 545183 545429 359 + . . scaffold1244 TRF Tandem_Repeat 545183 545764 606 + . . scaffold1244 TRF Tandem_Repeat 545429 545764 384 + . . scaffold1244 TRF Tandem_Repeat 546132 546292 227 + . . scaffold1244 TRF Tandem_Repeat 555853 555878 52 + . . scaffold1244 TRF Tandem_Repeat 561241 561272 57 + . . scaffold1244 TRF Tandem_Repeat 566728 566775 87 + . . scaffold1244 WUBlastX LINE_Penelope 570681 570914 30 - . . scaffold1244 WUBlastX LINE_Penelope 570795 571025 87 - . . scaffold1244 WUBlastX LINE_Penelope 570992 572014 163 - . . scaffold1244 WUBlastX LINE_Penelope 571286 572017 166 - . . scaffold1244 WUBlastX LINE_Penelope 571436 572038 272 - . . scaffold1244 WUBlastX LINE_Penelope 572029 572175 76 - . . scaffold1244 WUBlastX LINE_Penelope 572053 572199 43 - . . scaffold1244 WUBlastX LINE_Penelope 572056 572238 39 - . . scaffold1244 TRF Tandem_Repeat 573290 573417 91 + . . scaffold1244 TRF Tandem_Repeat 589044 589095 86 + . . scaffold1244 TRF Tandem_Repeat 599275 599306 64 + . . scaffold1244 WUBlastX DNA_Kolobok-IS4 605091 605582 41 + . . scaffold1244 WUBlastX DNA_IS4EU 605184 605582 64 + . . scaffold1244 WUBlastX DNA_IS4EU 605998 606171 65 + . . scaffold1244 TRF Tandem_Repeat 609369 609395 54 + . . scaffold1244 TRF Tandem_Repeat 611268 611935 900 + . . scaffold1244 TRF Tandem_Repeat 615851 615900 91 + . . scaffold1244 TRF Tandem_Repeat 625367 625409 54 + . . scaffold1244 TRF Tandem_Repeat 627382 627453 58 + . . scaffold1244 GLEAN promoter 634899 635898 0.0392589 - . ID=CGI_10020838; scaffold1244 GLEAN mRNA 635233 647942 0.720487 - . ID=CGI_10020839; scaffold1244 GLEAN promoter 647943 648942 0.720487 - . ID=CGI_10020839; scaffold1244 TRF Tandem_Repeat 654710 654759 82 + . . scaffold1244 GLEAN mRNA 654857 662518 0.834262 - . ID=CGI_10020840; scaffold1244 TRF Tandem_Repeat 657063 657095 66 + . . scaffold1244 TRF Tandem_Repeat 660124 662002 907 + . . scaffold1244 TRF Tandem_Repeat 660133 661092 621 + . . scaffold1244 TRF Tandem_Repeat 660145 660665 493 + . . scaffold1244 TRF Tandem_Repeat 660727 661083 261 + . . scaffold1244 TRF Tandem_Repeat 661627 662005 495 + . . scaffold1244 GLEAN promoter 662519 662526 0.834262 - . ID=CGI_10020840; scaffold1245 TRF Tandem_Repeat 829 870 84 + . . scaffold1245 GLEAN promoter 3573 4572 0.626695 + . ID=CGI_10009217; scaffold1245 GLEAN mRNA 4573 6423 0.626695 + . ID=CGI_10009217; scaffold1245 GLEAN mRNA 8846 27165 0.999947 - . ID=CGI_10009218; scaffold1245 TRF Tandem_Repeat 10040 10848 703 + . . scaffold1245 WUBlastX LINE_CR1-L2 18684 18785 55 + . . scaffold1245 WUBlastX LINE_CR1-L2 18826 18927 34 + . . scaffold1245 GLEAN promoter 20720 21719 0.999676 + . ID=CGI_10009219; scaffold1245 GLEAN mRNA 21720 29508 0.999676 + . ID=CGI_10009219; scaffold1245 GLEAN promoter 27166 28165 0.999947 - . ID=CGI_10009218; scaffold1245 GLEAN mRNA 35305 42117 0.999676 - . ID=CGI_10009220; scaffold1245 GLEAN promoter 42118 43117 0.999676 - . ID=CGI_10009220; scaffold1245 GLEAN promoter 45652 46651 0.999661 + . ID=CGI_10009221; scaffold1245 TRF Tandem_Repeat 45838 45913 152 + . . scaffold1245 GLEAN mRNA 46652 48873 0.999661 + . ID=CGI_10009221; scaffold1245 GLEAN mRNA 55469 62415 0.999925 - . ID=CGI_10009222; scaffold1245 GLEAN promoter 62416 63415 0.999925 - . ID=CGI_10009222; scaffold1245 GLEAN mRNA 71955 83410 0.993687 - . ID=CGI_10009223; scaffold1245 GLEAN promoter 83411 84410 0.993687 - . ID=CGI_10009223; scaffold1245 GLEAN mRNA 83881 84808 0.998846 - . ID=CGI_10009224; scaffold1245 GLEAN promoter 84196 85195 1 + . ID=CGI_10009225; scaffold1245 GLEAN promoter 84809 85808 0.998846 - . ID=CGI_10009224; scaffold1245 GLEAN mRNA 85196 93419 1 + . ID=CGI_10009225; scaffold1245 TRF Tandem_Repeat 93414 93579 161 + . . scaffold1245 WUBlastX LINE_RTE-X 97411 97824 141 - . . scaffold1245 WUBlastX LINE_RTE-X 97823 98575 127 - . . scaffold1245 WUBlastX LINE_RTE-X 98142 99344 319 - . . scaffold1245 WUBlastX LINE_RTE-X 98685 99365 352 - . . scaffold1245 WUBlastX LINE_Jockey 98832 99500 110 - . . scaffold1245 WUBlastX LINE_L2 99867 99947 21 - . . scaffold1245 WUBlastX LINE_I 99882 99947 22 - . . scaffold1245 GLEAN mRNA 102403 119670 0.989696 - . ID=CGI_10009226; scaffold1245 WUBlastX DNA_TcMar-Marin 104150 104362 49 - . . scaffold1245 WUBlastX DNA_TcMar-Marin 104370 104651 28 - . . scaffold1245 WUBlastX DNA_TcMar-Marin 104370 104831 22 - . . scaffold1245 WUBlastX DNA_TcMar-Marin 104433 104660 53 - . . scaffold1245 WUBlastX DNA_TcMar-Marin 104517 104654 61 - . . scaffold1245 TRF Tandem_Repeat 109715 109780 123 + . . scaffold1245 TRF Tandem_Repeat 115954 115999 92 + . . scaffold1245 GLEAN promoter 119671 120670 0.989696 - . ID=CGI_10009226; scaffold1245 GLEAN mRNA 119898 126505 0.926793 - . ID=CGI_10009227; scaffold1245 TRF Tandem_Repeat 125302 126239 941 + . . scaffold1245 GLEAN promoter 126506 127505 0.926793 - . ID=CGI_10009227; scaffold1245 GLEAN promoter 132727 133726 0.949719 + . ID=CGI_10009228; scaffold1245 GLEAN mRNA 133727 150482 0.949719 + . ID=CGI_10009228; scaffold1245 GLEAN promoter 153787 154786 0.965077 + . ID=CGI_10009229; scaffold1245 GLEAN mRNA 154787 178039 0.965077 + . ID=CGI_10009229; scaffold1245 TRF Tandem_Repeat 177575 177663 79 + . . scaffold1245 GLEAN mRNA 187338 190856 0.571727 - . ID=CGI_10009230; scaffold1245 GLEAN promoter 190857 191856 0.571727 - . ID=CGI_10009230; scaffold1245 TRF Tandem_Repeat 200126 200186 122 + . . scaffold1245 WUBlastX DNA_TcMar-Tc1 208103 209125 139 - . . scaffold1245 WUBlastX LTR_DIRS 212096 212347 33 - . . scaffold1245 WUBlastX LTR_DIRS 212375 212608 43 - . . scaffold1245 WUBlastX LTR_DIRS 212581 213102 170 - . . scaffold1245 WUBlastX LTR_DIRS 213007 213168 31 - . . scaffold1245 WUBlastX LTR_DIRS 213145 213339 40 - . . scaffold1245 WUBlastX LTR_DIRS 213299 213571 87 - . . scaffold1245 WUBlastX LTR_DIRS 213335 213877 68 - . . scaffold1245 WUBlastX LTR_DIRS 213341 213604 136 - . . scaffold1245 WUBlastX LTR_DIRS 213672 214049 20 - . . scaffold1245 GLEAN mRNA 221562 225833 1 - . ID=CGI_10009231; scaffold1245 GLEAN promoter 225834 226833 1 - . ID=CGI_10009231; scaffold1246 GLEAN promoter 1 63 0.69447 + . ID=CGI_10001800; scaffold1246 GLEAN mRNA 64 516 0.69447 + . ID=CGI_10001800; scaffold1246 GLEAN promoter 3295 4294 0.999996 + . ID=CGI_10001801; scaffold1246 GLEAN promoter 3871 4870 0.69447 + . ID=CGI_10001802; scaffold1246 GLEAN mRNA 4295 4537 0.999996 + . ID=CGI_10001801; scaffold1246 GLEAN mRNA 4871 5419 0.69447 + . ID=CGI_10001802; scaffold1246 GLEAN mRNA 7378 17414 0.992653 - . ID=CGI_10001803; scaffold1246 GLEAN promoter 17415 18414 0.992653 - . ID=CGI_10001803; scaffold1246 GLEAN mRNA 31165 31536 0.69447 - . ID=CGI_10001805; scaffold1246 GLEAN promoter 31537 31611 0.69447 - . ID=CGI_10001805; scaffold1247 WUBlastX LTR_Ngaro 336 545 43 - . . scaffold1247 TRF Tandem_Repeat 3160 3199 80 + . . scaffold1247 WUBlastX DNA_TcMar-Fot1 3797 5644 642 - . . scaffold1247 WUBlastX DNA_TcMar-Fot1 4322 5593 783 - . . scaffold1247 GLEAN mRNA 61059 61989 0.991218 - . ID=CGI_10008943; scaffold1247 GLEAN promoter 61990 62989 0.991218 - . ID=CGI_10008943; scaffold1247 TRF Tandem_Repeat 62610 63615 1543 + . . scaffold1247 TRF Tandem_Repeat 63785 63822 58 + . . scaffold1247 TRF Tandem_Repeat 65126 65178 88 + . . scaffold1247 GLEAN mRNA 74127 74351 0.866433 - . ID=CGI_10008944; scaffold1247 GLEAN promoter 74352 75351 0.866433 - . ID=CGI_10008944; scaffold1247 TRF Tandem_Repeat 89819 89872 81 + . . scaffold1247 TRF Tandem_Repeat 89822 89880 66 + . . scaffold1247 TRF Tandem_Repeat 92642 92680 78 + . . scaffold1247 GLEAN mRNA 96036 115392 0.95838 - . ID=CGI_10008945; scaffold1247 TRF Tandem_Repeat 109196 109231 72 + . . scaffold1247 WUBlastX LINE_L1-Tx1 112215 112400 30 + . . scaffold1247 WUBlastX LINE_L1 112649 113146 61 + . . scaffold1247 WUBlastX LINE_L1-Tx1 112751 113146 83 + . . scaffold1247 WUBlastX LINE_L1-Tx1 112766 113230 25 + . . scaffold1247 WUBlastX DNA_TcMar-Tc1 113688 113966 39 + . . scaffold1247 WUBlastX DNA_TcMar-Tc1 113832 114248 142 + . . scaffold1247 WUBlastX DNA_TcMar-Tc1 113982 114248 157 + . . scaffold1247 GLEAN promoter 115393 116392 0.95838 - . ID=CGI_10008945; scaffold1247 GLEAN promoter 128265 129264 0.65315 + . ID=CGI_10008946; scaffold1247 GLEAN mRNA 129265 150164 0.65315 + . ID=CGI_10008946; scaffold1247 TRF Tandem_Repeat 131738 131764 54 + . . scaffold1247 TRF Tandem_Repeat 133500 133727 167 + . . scaffold1247 TRF Tandem_Repeat 142100 143271 1736 + . . scaffold1247 GLEAN mRNA 144835 147978 0.999741 - . ID=CGI_10008947; scaffold1247 TRF Tandem_Repeat 145236 145278 86 + . . scaffold1247 TRF Tandem_Repeat 145327 145366 71 + . . scaffold1247 GLEAN promoter 147979 148978 0.999741 - . ID=CGI_10008947; scaffold1247 GLEAN mRNA 153583 155704 0.995903 - . ID=CGI_10008948; scaffold1247 GLEAN promoter 155705 156704 0.995903 - . ID=CGI_10008948; scaffold1247 GLEAN promoter 157391 158390 1 + . ID=CGI_10008949; scaffold1247 GLEAN mRNA 158391 163136 1 + . ID=CGI_10008949; scaffold1247 GLEAN mRNA 173109 184348 0.886383 - . ID=CGI_10008950; scaffold1247 WUBlastX DNA_MuDR 180915 181172 64 - . . scaffold1247 TRF Tandem_Repeat 181691 181716 52 + . . scaffold1247 WUBlastX DNA_TcMar-Tc1 181983 182192 73 + . . scaffold1247 WUBlastX DNA_TcMar-Tc1 182961 183137 58 + . . scaffold1247 GLEAN promoter 184349 185348 0.886383 - . ID=CGI_10008950; scaffold1247 GLEAN promoter 184717 185716 0.350146 + . ID=CGI_10008951; scaffold1247 GLEAN mRNA 185717 186145 0.350146 + . ID=CGI_10008951; scaffold1247 TRF Tandem_Repeat 188000 188064 130 + . . scaffold1247 GLEAN promoter 188579 189578 0.999985 + . ID=CGI_10008952; scaffold1247 GLEAN mRNA 189579 190547 0.999985 + . ID=CGI_10008952; scaffold1247 GLEAN promoter 196240 197239 0.996495 + . ID=CGI_10008953; scaffold1247 GLEAN mRNA 197240 208826 0.996495 + . ID=CGI_10008953; scaffold1247 TRF Tandem_Repeat 211590 211749 108 + . . scaffold1247 TRF Tandem_Repeat 211748 211918 184 + . . scaffold1247 GLEAN mRNA 213121 215043 1 - . ID=CGI_10008954; scaffold1247 GLEAN promoter 215044 216043 1 - . ID=CGI_10008954; scaffold1247 GLEAN mRNA 215364 216182 1 - . ID=CGI_10008955; scaffold1247 GLEAN promoter 215745 216744 1 + . ID=CGI_10008956; scaffold1247 GLEAN promoter 216183 217182 1 - . ID=CGI_10008955; scaffold1247 GLEAN mRNA 216745 217986 1 + . ID=CGI_10008956; scaffold1248 WUBlastX LINE_RTE-X 3136 3315 104 - . . scaffold1249 GLEAN mRNA 626 4765 0.762279 - . ID=CGI_10019043; scaffold1249 TRF Tandem_Repeat 2370 2415 83 + . . scaffold1249 TRF Tandem_Repeat 4391 4430 80 + . . scaffold1249 GLEAN promoter 4766 5765 0.762279 - . ID=CGI_10019043; scaffold1249 WUBlastX DNA_Harbinger 36271 36354 31 + . . scaffold1249 WUBlastX DNA_Harbinger 36444 36536 49 + . . scaffold1249 WUBlastX DNA_Harbinger 36465 36536 54 + . . scaffold1249 WUBlastX DNA_Harbinger 37042 37113 28 + . . scaffold1249 TRF Tandem_Repeat 46296 46342 85 + . . scaffold1249 GLEAN mRNA 52372 53253 0.924226 - . ID=CGI_10019044; scaffold1249 GLEAN promoter 53254 54253 0.924226 - . ID=CGI_10019044; scaffold1249 GLEAN mRNA 53502 71764 0.999664 - . ID=CGI_10019045; scaffold1249 TRF Tandem_Repeat 55625 55670 92 + . . scaffold1249 GLEAN promoter 56574 57573 0.6547 + . ID=CGI_10019046; scaffold1249 GLEAN mRNA 57574 76602 0.6547 + . ID=CGI_10019046; scaffold1249 TRF Tandem_Repeat 62827 62892 123 + . . scaffold1249 GLEAN promoter 71765 72764 0.999664 - . ID=CGI_10019045; scaffold1249 TRF Tandem_Repeat 74764 74812 98 + . . scaffold1249 GLEAN mRNA 79202 93203 0.821927 - . ID=CGI_10019047; scaffold1249 TRF Tandem_Repeat 90234 90269 72 + . . scaffold1249 GLEAN promoter 93204 94203 0.821927 - . ID=CGI_10019047; scaffold1249 GLEAN mRNA 98485 107635 0.82183 - . ID=CGI_10019048; scaffold1249 TRF Tandem_Repeat 101488 101548 52 + . . scaffold1249 TRF Tandem_Repeat 105407 105462 112 + . . scaffold1249 GLEAN promoter 107636 108635 0.82183 - . ID=CGI_10019048; scaffold1249 GLEAN mRNA 112636 113582 1 - . ID=CGI_10019049; scaffold1249 GLEAN promoter 113583 114582 1 - . ID=CGI_10019049; scaffold1249 GLEAN promoter 113878 114877 0.992776 + . ID=CGI_10019050; scaffold1249 GLEAN mRNA 114878 120746 0.992776 + . ID=CGI_10019050; scaffold1249 GLEAN promoter 123551 124550 0.558382 + . ID=CGI_10019051; scaffold1249 TRF Tandem_Repeat 123777 123814 76 + . . scaffold1249 GLEAN mRNA 124551 131714 0.558382 + . ID=CGI_10019051; scaffold1249 TRF Tandem_Repeat 126015 126073 118 + . . scaffold1249 WUBlastX LINE_DRE 127868 127942 23 + . . scaffold1249 WUBlastX LINE_RTE-X 128253 129914 719 + . . scaffold1249 WUBlastX LINE_RTE-X 128541 129923 911 + . . scaffold1249 WUBlastX LINE_RTE-X 128571 130214 454 + . . scaffold1249 WUBlastX LINE_RTE-X 129898 130281 182 + . . scaffold1249 WUBlastX LINE_RTE-X 129970 130338 106 + . . scaffold1249 WUBlastX LINE_RTE-X 130036 130407 100 + . . scaffold1249 TRF Tandem_Repeat 134446 134486 57 + . . scaffold1249 GLEAN promoter 136450 137449 1 + . ID=CGI_10019052; scaffold1249 GLEAN promoter 136830 137829 0.999992 + . ID=CGI_10019054; scaffold1249 GLEAN mRNA 137450 137638 1 + . ID=CGI_10019052; scaffold1249 GLEAN mRNA 137724 137978 1 - . ID=CGI_10019053; scaffold1249 GLEAN mRNA 137830 141322 0.999992 + . ID=CGI_10019054; scaffold1249 GLEAN promoter 137979 138978 1 - . ID=CGI_10019053; scaffold1249 TRF Tandem_Repeat 158173 158270 117 + . . scaffold1249 TRF Tandem_Repeat 158579 158629 52 + . . scaffold1249 GLEAN mRNA 162426 176584 0.651122 - . ID=CGI_10019055; scaffold1249 GLEAN promoter 176585 177584 0.651122 - . ID=CGI_10019055; scaffold1249 TRF Tandem_Repeat 189826 189871 92 + . . scaffold1249 TRF Tandem_Repeat 191727 192141 762 + . . scaffold1249 TRF Tandem_Repeat 196896 196951 112 + . . scaffold1249 GLEAN mRNA 203505 209970 1 - . ID=CGI_10019056; scaffold1249 TRF Tandem_Repeat 207088 207208 161 + . . scaffold1249 TRF Tandem_Repeat 207732 207797 132 + . . scaffold1249 GLEAN promoter 208452 209451 1 + . ID=CGI_10019057; scaffold1249 TRF Tandem_Repeat 208915 208981 98 + . . scaffold1249 GLEAN mRNA 209452 218345 1 + . ID=CGI_10019057; scaffold1249 GLEAN promoter 209971 210970 1 - . ID=CGI_10019056; scaffold1249 TRF Tandem_Repeat 232179 232236 116 + . . scaffold1249 WUBlastX LINE_L1 248985 249143 42 - . . scaffold1249 WUBlastX LINE_L1-Tx1 248991 249086 63 - . . scaffold1249 WUBlastX LINE_L1-Tx1 249000 249107 59 - . . scaffold1249 WUBlastX LINE_L1-Tx1 249273 249737 78 - . . scaffold1249 WUBlastX LINE_L1-Tx1 249390 249989 71 - . . scaffold1249 WUBlastX LINE_L1-Tx1 249390 249890 145 - . . scaffold1249 GLEAN mRNA 253670 268651 0.545459 - . ID=CGI_10019058; scaffold1249 TRF Tandem_Repeat 254780 255007 293 + . . scaffold1249 TRF Tandem_Repeat 254780 255049 154 + . . scaffold1249 TRF Tandem_Repeat 254783 254933 59 + . . scaffold1249 WUBlastX LINE_CR1-L2 259651 260139 22 - . . scaffold1249 WUBlastX LINE_CR1-L2 259781 260641 198 - . . scaffold1249 WUBlastX LINE_CR1-L2 260138 260662 249 - . . scaffold1249 WUBlastX LINE_CR1 260159 260878 55 - . . scaffold1249 WUBlastX LINE_L2 260900 260950 20 - . . scaffold1249 WUBlastX LINE_L2 261492 261569 22 - . . scaffold1249 TRF Tandem_Repeat 262137 262460 425 + . . scaffold1249 GLEAN promoter 268652 269651 0.545459 - . ID=CGI_10019058; scaffold1249 GLEAN mRNA 269345 279275 0.651916 - . ID=CGI_10019059; scaffold1249 TRF Tandem_Repeat 272171 272972 774 + . . scaffold1249 GLEAN promoter 279276 280275 0.651916 - . ID=CGI_10019059; scaffold1249 GLEAN mRNA 283678 288397 0.437769 - . ID=CGI_10019060; scaffold1249 GLEAN promoter 288398 289397 0.437769 - . ID=CGI_10019060; scaffold1249 TRF Tandem_Repeat 293283 293332 100 + . . scaffold1249 WUBlastX LTR_Gypsy 306343 306492 39 - . . scaffold1249 WUBlastX LTR_Gypsy 306370 306519 30 - . . scaffold1249 WUBlastX LTR_Gypsy-Cigr 306733 307023 39 - . . scaffold1249 WUBlastX LTR_Gypsy 306916 307023 85 - . . scaffold1249 WUBlastX DNA_Academ 308837 309049 59 - . . scaffold1249 WUBlastX DNA_Academ 309144 309509 57 - . . scaffold1249 WUBlastX DNA_Academ 309514 309687 95 - . . scaffold1249 GLEAN promoter 321246 322245 1 + . ID=CGI_10019061; scaffold1249 GLEAN mRNA 322246 322853 1 + . ID=CGI_10019061; scaffold1249 GLEAN promoter 322663 323662 0.702384 + . ID=CGI_10019062; scaffold1249 TRF Tandem_Repeat 323465 323642 248 + . . scaffold1249 TRF Tandem_Repeat 323465 323632 201 + . . scaffold1249 GLEAN mRNA 323663 331083 0.702384 + . ID=CGI_10019062; scaffold1249 TRF Tandem_Repeat 326195 326347 207 + . . scaffold1249 GLEAN mRNA 332076 338091 0.946691 - . ID=CGI_10019063; scaffold1249 GLEAN promoter 338092 339091 0.946691 - . ID=CGI_10019063; scaffold1249 GLEAN mRNA 345362 350836 0.912176 - . ID=CGI_10019064; scaffold1249 GLEAN promoter 350837 351836 0.912176 - . ID=CGI_10019064; scaffold1249 WUBlastX LINE_RTE-X 352686 353453 130 - . . scaffold1249 WUBlastX LINE_RTE-X 352812 353453 144 - . . scaffold1249 WUBlastX LINE_L2 353635 353931 105 - . . scaffold1249 WUBlastX LINE_CR1-L2 353638 354141 60 - . . scaffold1249 WUBlastX LINE_CR1-L2 353644 354615 28 - . . scaffold1249 WUBlastX LINE_CR1-L2 354626 354796 41 - . . scaffold1249 TRF Tandem_Repeat 360392 360498 125 + . . scaffold1249 GLEAN promoter 361287 362286 1 + . ID=CGI_10019065; scaffold1249 GLEAN mRNA 362287 371442 1 + . ID=CGI_10019065; scaffold1249 TRF Tandem_Repeat 367529 367573 81 + . . scaffold1249 GLEAN mRNA 372059 373414 0.988716 - . ID=CGI_10019066; scaffold1249 GLEAN promoter 373415 374414 0.988716 - . ID=CGI_10019066; scaffold1249 GLEAN promoter 384797 385796 0.812905 + . ID=CGI_10019067; scaffold1249 GLEAN mRNA 385797 398389 0.812905 + . ID=CGI_10019067; scaffold1249 TRF Tandem_Repeat 386391 386477 65 + . . scaffold1249 GLEAN promoter 397763 398762 0.977989 + . ID=CGI_10019068; scaffold1249 GLEAN mRNA 398763 402891 0.977989 + . ID=CGI_10019068; scaffold1249 GLEAN mRNA 408811 410987 0.993907 - . ID=CGI_10019069; scaffold1249 GLEAN promoter 410988 411987 0.993907 - . ID=CGI_10019069; scaffold1249 GLEAN promoter 414378 415377 1 + . ID=CGI_10019070; scaffold1249 GLEAN mRNA 415378 423997 1 + . ID=CGI_10019070; scaffold1249 TRF Tandem_Repeat 419507 419565 84 + . . scaffold1249 TRF Tandem_Repeat 434144 434187 88 + . . scaffold1249 GLEAN promoter 434806 435805 0.998704 + . ID=CGI_10019071; scaffold1249 GLEAN mRNA 435806 459154 0.998704 + . ID=CGI_10019071; scaffold1249 TRF Tandem_Repeat 459191 459314 96 + . . scaffold1249 GLEAN mRNA 460722 465966 0.999676 - . ID=CGI_10019072; scaffold1249 GLEAN promoter 465967 466966 0.999676 - . ID=CGI_10019072; scaffold1249 GLEAN promoter 466392 467391 0.999624 + . ID=CGI_10019073; scaffold1249 GLEAN mRNA 467392 481171 0.999624 + . ID=CGI_10019073; scaffold1249 GLEAN promoter 480533 481532 1 + . ID=CGI_10019074; scaffold1249 GLEAN mRNA 481533 484440 1 + . ID=CGI_10019074; scaffold1249 GLEAN mRNA 485730 489204 1 - . ID=CGI_10019075; scaffold1249 TRF Tandem_Repeat 487506 487548 86 + . . scaffold1249 TRF Tandem_Repeat 488069 488109 82 + . . scaffold1249 GLEAN promoter 489205 490204 1 - . ID=CGI_10019075; scaffold1249 GLEAN promoter 492149 493148 1 + . ID=CGI_10019076; scaffold1249 GLEAN mRNA 493149 497416 1 + . ID=CGI_10019076; scaffold1249 GLEAN promoter 502323 503322 0.651002 + . ID=CGI_10019077; scaffold1249 GLEAN mRNA 503323 504820 0.651002 + . ID=CGI_10019077; scaffold1249 TRF Tandem_Repeat 505216 505242 54 + . . scaffold1249 TRF Tandem_Repeat 509396 509433 76 + . . scaffold1249 TRF Tandem_Repeat 514126 514165 80 + . . scaffold1249 TRF Tandem_Repeat 516278 516373 84 + . . scaffold1249 GLEAN promoter 517932 518931 0.999996 + . ID=CGI_10019078; scaffold1249 GLEAN mRNA 518932 520909 0.999996 + . ID=CGI_10019078; scaffold1249 WUBlastX LINE_CR1-L2 529362 529535 45 - . . scaffold1249 GLEAN promoter 531640 532639 0.971957 + . ID=CGI_10019079; scaffold1249 GLEAN mRNA 532640 542588 0.971957 + . ID=CGI_10019079; scaffold1249 TRF Tandem_Repeat 532766 532961 177 + . . scaffold1249 GLEAN mRNA 548312 553477 1 - . ID=CGI_10019080; scaffold1249 GLEAN promoter 553478 554477 1 - . ID=CGI_10019080; scaffold1249 TRF Tandem_Repeat 554892 554929 60 + . . scaffold1249 TRF Tandem_Repeat 556667 556712 92 + . . scaffold1249 GLEAN promoter 564171 565170 0.999999 + . ID=CGI_10019081; scaffold1249 GLEAN mRNA 565171 575106 0.999999 + . ID=CGI_10019081; scaffold1249 TRF Tandem_Repeat 574140 574185 74 + . . scaffold1249 TRF Tandem_Repeat 575531 575832 604 + . . scaffold125 WUBlastX LTR_Gypsy 51 107 29 - . . scaffold125 WUBlastX LTR_Gypsy 314 481 131 - . . scaffold1250 TRF Tandem_Repeat 257 283 54 + . . scaffold1250 TRF Tandem_Repeat 10169 10287 132 + . . scaffold1250 WUBlastX DNA_Harbinger 13845 14012 29 - . . scaffold1250 WUBlastX DNA_Harbinger 14141 14281 23 - . . scaffold1250 WUBlastX DNA_Harbinger 14477 14548 27 - . . scaffold1250 GLEAN promoter 14484 15483 0.83621 + . ID=CGI_10004324; scaffold1250 GLEAN mRNA 15484 15834 0.83621 + . ID=CGI_10004324; scaffold1250 WUBlastX LTR_Ngaro 17119 17376 43 + . . scaffold1250 WUBlastX DNA_IS4EU 26943 27305 50 + . . scaffold1250 WUBlastX DNA_Sola 28213 28644 208 + . . scaffold1250 WUBlastX DNA_Sola 28696 29388 198 + . . scaffold1250 WUBlastX LINE_L1 30717 30881 41 + . . scaffold1250 WUBlastX LINE_L1-Tx1 30763 31299 183 + . . scaffold1250 WUBlastX LINE_L1 31299 32711 270 + . . scaffold1250 WUBlastX LINE_L1-Tx1 31299 32306 300 + . . scaffold1250 WUBlastX LINE_L1-Tx1 31299 31919 382 + . . scaffold1250 WUBlastX LINE_L1-Tx1 32791 33141 38 + . . scaffold1250 WUBlastX LINE_L1-Tx1 32803 33387 24 + . . scaffold1250 WUBlastX LINE_L1 32905 33150 46 + . . scaffold1250 GLEAN mRNA 46165 71974 0.483157 - . ID=CGI_10004325; scaffold1250 TRF Tandem_Repeat 53147 53185 51 + . . scaffold1250 TRF Tandem_Repeat 62009 62037 58 + . . scaffold1250 TRF Tandem_Repeat 67527 67570 70 + . . scaffold1250 GLEAN promoter 71975 72974 0.483157 - . ID=CGI_10004325; scaffold1250 GLEAN promoter 72061 73060 0.618241 + . ID=CGI_10004326; scaffold1250 GLEAN mRNA 73061 73276 0.618241 + . ID=CGI_10004326; scaffold1250 GLEAN mRNA 78308 84215 0.998799 - . ID=CGI_10004327; scaffold1250 GLEAN promoter 84216 85215 0.998799 - . ID=CGI_10004327; scaffold1251 TRF Tandem_Repeat 2044 2084 82 + . . scaffold1251 TRF Tandem_Repeat 4774 4829 112 + . . scaffold1251 GLEAN mRNA 5575 27719 0.997488 - . ID=CGI_10004009; scaffold1251 TRF Tandem_Repeat 26976 27015 80 + . . scaffold1251 GLEAN promoter 27720 28719 0.997488 - . ID=CGI_10004009; scaffold1251 TRF Tandem_Repeat 31164 31208 83 + . . scaffold1251 TRF Tandem_Repeat 31525 31562 76 + . . scaffold1251 TRF Tandem_Repeat 32024 32182 170 + . . scaffold1251 TRF Tandem_Repeat 32024 32182 170 + . . scaffold1251 WUBlastX LTR_Pao 37319 40987 2388 + . . scaffold1251 WUBlastX LTR_Pao 38192 42400 2981 + . . scaffold1251 WUBlastX LTR_Pao 42840 42926 20 + . . scaffold1251 GLEAN mRNA 44666 52852 0.645112 - . ID=CGI_10004010; scaffold1251 TRF Tandem_Repeat 49405 49489 170 + . . scaffold1251 GLEAN promoter 52853 53852 0.645112 - . ID=CGI_10004010; scaffold1251 WUBlastX LINE_L1-Tx1 58569 58943 60 + . . scaffold1251 TRF Tandem_Repeat 60260 60295 63 + . . scaffold1251 TRF Tandem_Repeat 60295 60354 120 + . . scaffold1251 TRF Tandem_Repeat 67172 67213 68 + . . scaffold1251 GLEAN mRNA 80107 86358 1 - . ID=CGI_10004011; scaffold1251 TRF Tandem_Repeat 80793 81527 725 + . . scaffold1251 TRF Tandem_Repeat 84666 84729 92 + . . scaffold1251 TRF Tandem_Repeat 84675 84738 92 + . . scaffold1251 GLEAN promoter 86359 87358 1 - . ID=CGI_10004011; scaffold1252 GLEAN promoter 3214 4213 0.201897 + . ID=CGI_10013115; scaffold1252 GLEAN mRNA 4214 13359 0.201897 + . ID=CGI_10013115; scaffold1252 TRF Tandem_Repeat 7173 7324 187 + . . scaffold1252 TRF Tandem_Repeat 28604 28646 86 + . . scaffold1252 TRF Tandem_Repeat 32119 32145 54 + . . scaffold1252 TRF Tandem_Repeat 39855 39908 53 + . . scaffold1252 TRF Tandem_Repeat 39855 39910 60 + . . scaffold1252 TRF Tandem_Repeat 39859 39910 70 + . . scaffold1252 TRF Tandem_Repeat 44110 44138 58 + . . scaffold1252 TRF Tandem_Repeat 70426 70469 61 + . . scaffold1252 TRF Tandem_Repeat 92509 92588 58 + . . scaffold1252 TRF Tandem_Repeat 92876 92914 60 + . . scaffold1252 GLEAN promoter 98277 99276 0.999947 + . ID=CGI_10013116; scaffold1252 TRF Tandem_Repeat 98906 98952 67 + . . scaffold1252 GLEAN mRNA 99277 108225 0.999947 + . ID=CGI_10013116; scaffold1252 TRF Tandem_Repeat 99968 100058 110 + . . scaffold1252 TRF Tandem_Repeat 106514 106567 99 + . . scaffold1252 TRF Tandem_Repeat 108359 108405 67 + . . scaffold1252 TRF Tandem_Repeat 110460 111399 1043 + . . scaffold1252 TRF Tandem_Repeat 114087 114146 75 + . . scaffold1252 TRF Tandem_Repeat 116816 116857 84 + . . scaffold1252 TRF Tandem_Repeat 117348 117407 93 + . . scaffold1252 TRF Tandem_Repeat 117348 117407 75 + . . scaffold1252 GLEAN promoter 121255 122254 0.999799 + . ID=CGI_10013117; scaffold1252 GLEAN mRNA 122255 142328 0.999799 + . ID=CGI_10013117; scaffold1252 TRF Tandem_Repeat 125979 126009 53 + . . scaffold1252 TRF Tandem_Repeat 125979 126013 52 + . . scaffold1252 TRF Tandem_Repeat 126011 126229 377 + . . scaffold1252 TRF Tandem_Repeat 150416 150448 66 + . . scaffold1252 GLEAN mRNA 151546 164068 1 - . ID=CGI_10013119; scaffold1252 TRF Tandem_Repeat 153401 154438 1872 + . . scaffold1252 TRF Tandem_Repeat 154599 154640 56 + . . scaffold1252 TRF Tandem_Repeat 160139 160250 197 + . . scaffold1252 GLEAN promoter 164069 165068 1 - . ID=CGI_10013119; scaffold1252 TRF Tandem_Repeat 172935 172975 82 + . . scaffold1252 GLEAN mRNA 173266 177951 0.613067 - . ID=CGI_10013120; scaffold1252 GLEAN promoter 177952 178951 0.613067 - . ID=CGI_10013120; scaffold1252 TRF Tandem_Repeat 207184 207238 69 + . . scaffold1252 WUBlastX LINE_RTE-BovB 207285 207818 182 + . . scaffold1252 WUBlastX LINE_RTE-BovB 207514 208185 223 + . . scaffold1252 WUBlastX LINE_RTE-BovB 207757 208281 249 + . . scaffold1252 TRF Tandem_Repeat 217974 218087 117 + . . scaffold1252 TRF Tandem_Repeat 219037 219071 52 + . . scaffold1252 TRF Tandem_Repeat 221003 221065 126 + . . scaffold1252 TRF Tandem_Repeat 227218 227371 159 + . . scaffold1252 TRF Tandem_Repeat 231000 231028 58 + . . scaffold1252 TRF Tandem_Repeat 236608 236663 112 + . . scaffold1252 TRF Tandem_Repeat 239695 239719 50 + . . scaffold1252 TRF Tandem_Repeat 241310 241349 80 + . . scaffold1252 TRF Tandem_Repeat 248907 248957 50 + . . scaffold1252 TRF Tandem_Repeat 248907 248957 70 + . . scaffold1252 TRF Tandem_Repeat 256001 256055 101 + . . scaffold1252 GLEAN promoter 259981 260980 1 + . ID=CGI_10013121; scaffold1252 GLEAN mRNA 260981 269359 1 + . ID=CGI_10013121; scaffold1252 TRF Tandem_Repeat 263981 264215 164 + . . scaffold1252 TRF Tandem_Repeat 265588 265708 169 + . . scaffold1252 TRF Tandem_Repeat 267984 268038 110 + . . scaffold1252 GLEAN promoter 271418 272417 1 + . ID=CGI_10013122; scaffold1252 TRF Tandem_Repeat 272262 272304 86 + . . scaffold1252 GLEAN mRNA 272418 275290 1 + . ID=CGI_10013122; scaffold1252 GLEAN mRNA 275105 286656 0.999673 - . ID=CGI_10013123; scaffold1252 GLEAN promoter 286657 287656 0.999673 - . ID=CGI_10013123; scaffold1252 GLEAN mRNA 294568 343049 0.93602 - . ID=CGI_10013124; scaffold1252 TRF Tandem_Repeat 298862 298916 110 + . . scaffold1252 TRF Tandem_Repeat 299444 300425 1319 + . . scaffold1252 TRF Tandem_Repeat 304045 304162 69 + . . scaffold1252 TRF Tandem_Repeat 304779 304844 98 + . . scaffold1252 GLEAN promoter 309249 310248 0.378967 + . ID=CGI_10013125; scaffold1252 GLEAN mRNA 310249 313752 0.378967 + . ID=CGI_10013125; scaffold1252 TRF Tandem_Repeat 329860 331114 1748 + . . scaffold1252 TRF Tandem_Repeat 332340 332391 86 + . . scaffold1252 TRF Tandem_Repeat 332340 332397 73 + . . scaffold1252 TRF Tandem_Repeat 341518 341552 70 + . . scaffold1252 WUBlastX LINE_RTE-X 341848 342546 212 - . . scaffold1252 GLEAN promoter 343050 344049 0.93602 - . ID=CGI_10013124; scaffold1253 GLEAN promoter 41 1040 0.999547 + . ID=CGI_10004817; scaffold1253 GLEAN mRNA 1041 6486 0.999547 + . ID=CGI_10004817; scaffold1253 WUBlastX LINE_L1-Tx1 7817 8458 41 - . . scaffold1253 WUBlastX LINE_L1-Tx1 7916 8458 93 - . . scaffold1253 WUBlastX LINE_L1-Tx1 9729 9782 20 - . . scaffold1253 WUBlastX LINE_L1-Tx1 9829 9927 64 - . . scaffold1253 WUBlastX LINE_L1-Tx1 12312 12683 47 + . . scaffold1253 WUBlastX LINE_L1-Tx1 12378 12821 60 + . . scaffold1253 GLEAN promoter 15186 16185 0.331456 + . ID=CGI_10004818; scaffold1253 GLEAN mRNA 16186 44891 0.331456 + . ID=CGI_10004818; scaffold1253 TRF Tandem_Repeat 27556 27667 82 + . . scaffold1253 TRF Tandem_Repeat 27820 27900 72 + . . scaffold1253 TRF Tandem_Repeat 27830 27893 83 + . . scaffold1253 TRF Tandem_Repeat 38440 38466 54 + . . scaffold1253 WUBlastX LTR_Gypsy 41178 41243 29 + . . scaffold1253 WUBlastX LTR_Gypsy 41190 41243 38 + . . scaffold1253 WUBlastX LTR_Gypsy 41868 43061 149 + . . scaffold1253 WUBlastX LTR_Gypsy 42057 43676 1348 + . . scaffold1253 WUBlastX LTR_Copia 43788 43817 22 + . . scaffold1253 WUBlastX LTR_Gypsy 44178 44711 63 + . . scaffold1253 TRF Tandem_Repeat 48743 49713 1443 + . . scaffold1253 TRF Tandem_Repeat 49884 49926 50 + . . scaffold1253 GLEAN mRNA 51549 51938 0.843431 - . ID=CGI_10004819; scaffold1253 GLEAN promoter 51939 52938 0.843431 - . ID=CGI_10004819; scaffold1253 WUBlastX LINE_CR1 52949 53152 47 + . . scaffold1253 WUBlastX LINE_CR1 52988 53134 72 + . . scaffold1253 WUBlastX LINE_CR1-L2 53024 53158 54 + . . scaffold1253 WUBlastX LINE_L2 54267 54479 61 - . . scaffold1253 WUBlastX LINE_CR1-L2 54294 54470 69 - . . scaffold1253 WUBlastX LINE_CR1 54300 54521 29 - . . scaffold1253 WUBlastX LINE_L2 61102 61590 32 - . . scaffold1253 WUBlastX RC_Helitron 61183 66630 3045 - . . scaffold1253 TRF Tandem_Repeat 66644 66953 280 + . . scaffold1253 WUBlastX RC_Helitron 67075 67911 57 - . . scaffold1253 WUBlastX RC_Helitron 67291 67920 123 - . . scaffold1253 WUBlastX RC_Helitron 67294 68226 35 - . . scaffold1253 TRF Tandem_Repeat 73202 73255 76 + . . scaffold1253 TRF Tandem_Repeat 73205 73250 76 + . . scaffold1253 GLEAN mRNA 76428 78990 1 - . ID=CGI_10004820; scaffold1253 GLEAN promoter 78991 79990 1 - . ID=CGI_10004820; scaffold1253 GLEAN mRNA 79007 85139 0.54485 - . ID=CGI_10004821; scaffold1253 GLEAN promoter 85140 86139 0.54485 - . ID=CGI_10004821; scaffold1253 WUBlastX DNA_TcMar-ISRm1 90958 91764 139 + . . scaffold1253 WUBlastX DNA_TcMar-ISRm1 91327 91875 114 + . . scaffold1253 TRF Tandem_Repeat 96415 96490 116 + . . scaffold1253 TRF Tandem_Repeat 96415 96490 116 + . . scaffold1253 TRF Tandem_Repeat 96415 96490 116 + . . scaffold1253 GLEAN mRNA 96780 99842 0.999824 - . ID=CGI_10004822; scaffold1253 GLEAN promoter 99843 100842 0.999824 - . ID=CGI_10004822; scaffold1253 GLEAN mRNA 102918 110431 0.634382 - . ID=CGI_10004823; scaffold1253 TRF Tandem_Repeat 105893 106061 302 + . . scaffold1253 WUBlastX LINE_RTE-BovB 109340 109591 47 + . . scaffold1253 WUBlastX LINE_RTE-BovB 109349 109537 51 + . . scaffold1253 GLEAN promoter 110432 111431 0.634382 - . ID=CGI_10004823; scaffold1253 GLEAN mRNA 110741 112223 1 - . ID=CGI_10004824; scaffold1253 GLEAN promoter 112224 112223 1 - . ID=CGI_10004824; scaffold1254 GLEAN mRNA 2461 9836 0.99882 - . ID=CGI_10000919; scaffold1254 GLEAN promoter 9837 10836 0.99882 - . ID=CGI_10000919; scaffold1255 GLEAN promoter 708 1707 1 + . ID=CGI_10018054; scaffold1255 GLEAN mRNA 1708 2760 1 + . ID=CGI_10018054; scaffold1255 WUBlastX DNA_Kolobok 2926 3075 71 + . . scaffold1255 GLEAN mRNA 3472 8230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX DNA_Kolobok 3822 3989 91 - . . scaffold1255 WUBlastX DNA_Kolobok 4139 4312 74 - . . scaffold1255 WUBlastX DNA_Kolobok 4175 4333 88 - . . scaffold1255 WUBlastX DNA_Kolobok 4244 4744 53 - . . scaffold1255 WUBlastX DNA_Kolobok 4508 4747 122 - . . scaffold1255 WUBlastX DNA_Kolobok 4834 5031 107 - . . scaffold1255 WUBlastX DNA_Kolobok 4843 5082 79 - . . scaffold1255 WUBlastX DNA_Kolobok 5250 5780 239 - . . scaffold1255 WUBlastX DNA_P 7871 8230 42 - . . scaffold1255 WUBlastX DNA_Kolobok 7997 8230 49 - . . scaffold1255 GLEAN promoter 8231 9230 0.999979 - . ID=CGI_10018055; scaffold1255 WUBlastX LTR_Ngaro 20361 21434 56 - . . scaffold1255 WUBlastX LTR_Ngaro 20391 21008 75 - . . scaffold1255 WUBlastX LTR_Ngaro 20538 21239 220 - . . scaffold1255 GLEAN mRNA 21989 22926 0.993466 - . ID=CGI_10018056; scaffold1255 GLEAN promoter 22927 23926 0.993466 - . ID=CGI_10018056; scaffold1255 GLEAN mRNA 27822 43552 0.702291 - . ID=CGI_10018057; scaffold1255 TRF Tandem_Repeat 33350 33547 191 + . . scaffold1255 TRF Tandem_Repeat 36175 36366 182 + . . scaffold1255 TRF Tandem_Repeat 36915 37096 188 + . . scaffold1255 GLEAN promoter 43553 44552 0.702291 - . ID=CGI_10018057; scaffold1255 TRF Tandem_Repeat 47676 47731 105 + . . scaffold1255 TRF Tandem_Repeat 50106 50190 79 + . . scaffold1255 TRF Tandem_Repeat 52472 52535 53 + . . scaffold1255 GLEAN promoter 54785 55784 0.998504 + . ID=CGI_10018058; scaffold1255 GLEAN mRNA 55785 61408 0.998504 + . ID=CGI_10018058; scaffold1255 TRF Tandem_Repeat 57844 57874 55 + . . scaffold1255 TRF Tandem_Repeat 76353 76419 127 + . . scaffold1255 TRF Tandem_Repeat 78916 78943 56 + . . scaffold1255 TRF Tandem_Repeat 79254 79316 126 + . . scaffold1255 GLEAN promoter 80662 81661 0.98478 + . ID=CGI_10018059; scaffold1255 GLEAN mRNA 81662 93486 0.98478 + . ID=CGI_10018059; scaffold1255 GLEAN mRNA 102008 102211 0.979657 - . ID=CGI_10018060; scaffold1255 GLEAN promoter 102212 103211 0.979657 - . ID=CGI_10018060; scaffold1255 GLEAN promoter 106102 107101 0.98703 + . ID=CGI_10018061; scaffold1255 GLEAN mRNA 107102 122148 0.98703 + . ID=CGI_10018061; scaffold1255 TRF Tandem_Repeat 123294 123410 78 + . . scaffold1255 TRF Tandem_Repeat 123644 124102 561 + . . scaffold1255 TRF Tandem_Repeat 123644 124102 500 + . . scaffold1255 TRF Tandem_Repeat 123644 124102 536 + . . scaffold1255 TRF Tandem_Repeat 125366 125611 411 + . . scaffold1255 TRF Tandem_Repeat 142321 142563 227 + . . scaffold1255 TRF Tandem_Repeat 142402 142563 162 + . . scaffold1255 GLEAN mRNA 146423 147180 0.544741 - . ID=CGI_10018062; scaffold1255 GLEAN promoter 147181 148180 0.544741 - . ID=CGI_10018062; scaffold1255 GLEAN mRNA 164771 177006 0.82999 - . ID=CGI_10018063; scaffold1255 TRF Tandem_Repeat 171563 172312 1069 + . . scaffold1255 TRF Tandem_Repeat 173735 173792 100 + . . scaffold1255 TRF Tandem_Repeat 173738 173791 65 + . . scaffold1255 GLEAN promoter 177007 178006 0.82999 - . ID=CGI_10018063; scaffold1255 TRF Tandem_Repeat 179621 179973 201 + . . scaffold1255 TRF Tandem_Repeat 179621 179973 195 + . . scaffold1255 TRF Tandem_Repeat 179621 179785 73 + . . scaffold1255 TRF Tandem_Repeat 179667 179791 98 + . . scaffold1255 GLEAN promoter 181936 182935 1 + . ID=CGI_10018064; scaffold1255 GLEAN mRNA 182936 185677 1 + . ID=CGI_10018064; scaffold1255 GLEAN mRNA 186843 188481 1 - . ID=CGI_10018065; scaffold1255 GLEAN promoter 188482 189481 1 - . ID=CGI_10018065; scaffold1255 TRF Tandem_Repeat 192927 193116 247 + . . scaffold1255 TRF Tandem_Repeat 196220 196368 167 + . . scaffold1255 GLEAN promoter 197297 198296 0.999944 + . ID=CGI_10018067; scaffold1255 GLEAN mRNA 198297 207782 0.999944 + . ID=CGI_10018067; scaffold1255 GLEAN mRNA 211548 212816 0.999998 - . ID=CGI_10018068; scaffold1255 WUBlastX RC_Helitron 211554 211826 31 - . . scaffold1255 GLEAN promoter 212817 213816 0.999998 - . ID=CGI_10018068; scaffold1255 WUBlastX LTR_Gypsy 213971 214153 21 - . . scaffold1255 GLEAN mRNA 214109 222745 0.998357 - . ID=CGI_10018069; scaffold1255 GLEAN promoter 222746 223745 0.998357 - . ID=CGI_10018069; scaffold1255 TRF Tandem_Repeat 223784 223882 123 + . . scaffold1255 TRF Tandem_Repeat 224685 224917 193 + . . scaffold1255 TRF Tandem_Repeat 227090 227118 58 + . . scaffold1255 GLEAN promoter 235016 236015 1 + . ID=CGI_10018070; scaffold1255 GLEAN mRNA 236016 239856 1 + . ID=CGI_10018070; scaffold1255 GLEAN mRNA 243667 250179 1 - . ID=CGI_10018071; scaffold1255 GLEAN promoter 250180 251179 1 - . ID=CGI_10018071; scaffold1255 GLEAN mRNA 252833 257273 0.811719 - . ID=CGI_10018072; scaffold1255 GLEAN promoter 257274 258273 0.811719 - . ID=CGI_10018072; scaffold1255 TRF Tandem_Repeat 262973 263028 112 + . . scaffold1255 GLEAN promoter 271736 272735 1 + . ID=CGI_10018073; scaffold1255 GLEAN mRNA 272736 275722 1 + . ID=CGI_10018073; scaffold1255 TRF Tandem_Repeat 279953 279996 88 + . . scaffold1255 GLEAN promoter 289039 290038 1 + . ID=CGI_10018074; scaffold1255 GLEAN mRNA 290039 296981 1 + . ID=CGI_10018074; scaffold1255 TRF Tandem_Repeat 293945 294330 772 + . . scaffold1255 GLEAN mRNA 299813 311117 0.999949 - . ID=CGI_10018075; scaffold1255 TRF Tandem_Repeat 305273 305342 79 + . . scaffold1255 TRF Tandem_Repeat 305273 305342 97 + . . scaffold1255 TRF Tandem_Repeat 305281 305339 91 + . . scaffold1255 TRF Tandem_Repeat 305512 307024 2108 + . . scaffold1255 GLEAN promoter 310795 311794 0.810991 + . ID=CGI_10018076; scaffold1255 GLEAN promoter 311118 312117 0.999949 - . ID=CGI_10018075; scaffold1255 GLEAN mRNA 311795 326352 0.810991 + . ID=CGI_10018076; scaffold1255 TRF Tandem_Repeat 330196 330246 75 + . . scaffold1255 GLEAN mRNA 331278 345585 0.999828 - . ID=CGI_10018077; scaffold1255 GLEAN promoter 345586 346585 0.999828 - . ID=CGI_10018077; scaffold1255 TRF Tandem_Repeat 346802 346881 151 + . . scaffold1255 GLEAN promoter 347633 348632 1 + . ID=CGI_10018078; scaffold1255 GLEAN mRNA 348633 349175 1 + . ID=CGI_10018078; scaffold1255 WUBlastX DNA_Maverick 349180 349665 58 - . . scaffold1255 WUBlastX DNA_Maverick 349309 349716 133 - . . scaffold1255 WUBlastX DNA_Maverick 349722 350939 589 - . . scaffold1255 WUBlastX DNA_Maverick 351695 352732 611 - . . scaffold1255 WUBlastX LTR_Gypsy-Cigr 352088 352870 68 - . . scaffold1255 GLEAN mRNA 352774 353274 0.927762 - . ID=CGI_10018079; scaffold1255 GLEAN promoter 353275 354274 0.927762 - . ID=CGI_10018079; scaffold1255 WUBlastX DNA_Maverick 354160 354759 392 - . . scaffold1255 WUBlastX DNA_Maverick 354928 355098 51 - . . scaffold1255 WUBlastX DNA_Maverick 355058 355765 524 - . . scaffold1255 TRF Tandem_Repeat 355792 355845 108 + . . scaffold1255 WUBlastX DNA_Maverick 355881 356387 456 - . . scaffold1255 WUBlastX DNA_Maverick 356597 356995 98 - . . scaffold1255 WUBlastX DNA_Maverick 356660 357136 176 - . . scaffold1255 TRF Tandem_Repeat 357030 357055 52 + . . scaffold1255 WUBlastX DNA_Maverick 357128 357280 58 - . . scaffold1255 WUBlastX DNA_Maverick 357527 358225 405 - . . scaffold1255 WUBlastX DNA_Maverick 357527 358372 336 - . . scaffold1255 TRF Tandem_Repeat 358489 358513 50 + . . scaffold1255 WUBlastX DNA_Maverick 358537 358743 28 - . . scaffold1255 WUBlastX DNA_Maverick 358838 359311 108 - . . scaffold1255 WUBlastX DNA_Maverick 359330 359887 61 - . . scaffold1255 WUBlastX DNA_Maverick 359438 359962 94 - . . scaffold1255 GLEAN mRNA 362322 363195 0.593372 - . ID=CGI_10018081; scaffold1255 GLEAN promoter 363196 364195 0.593372 - . ID=CGI_10018081; scaffold1255 GLEAN promoter 363541 364540 1 + . ID=CGI_10018082; scaffold1255 GLEAN mRNA 364541 368563 1 + . ID=CGI_10018082; scaffold1255 TRF Tandem_Repeat 370236 370949 1023 + . . scaffold1255 GLEAN promoter 371354 372353 0.977275 + . ID=CGI_10018083; scaffold1255 TRF Tandem_Repeat 371866 371903 76 + . . scaffold1255 TRF Tandem_Repeat 371982 372006 50 + . . scaffold1255 GLEAN mRNA 372354 397475 0.977275 + . ID=CGI_10018083; scaffold1255 WUBlastX DNA_hAT 377258 378478 257 - . . scaffold1255 WUBlastX DNA_hAT 379013 379195 57 - . . scaffold1255 GLEAN mRNA 380027 380257 0.452881 - . ID=CGI_10018084; scaffold1255 GLEAN promoter 380258 381257 0.452881 - . ID=CGI_10018084; scaffold1255 GLEAN mRNA 384695 387892 0.817334 - . ID=CGI_10018085; scaffold1255 WUBlastX DNA_hAT 385091 386164 201 - . . scaffold1255 WUBlastX DNA_hAT 386230 386445 74 - . . scaffold1255 GLEAN promoter 387893 388892 0.817334 - . ID=CGI_10018085; scaffold1255 WUBlastX LTR_Gypsy 392466 392657 22 + . . scaffold1255 WUBlastX LTR_Gypsy 392496 392702 26 + . . scaffold1255 WUBlastX LTR_Gypsy 392693 393196 30 + . . scaffold1255 WUBlastX LTR_Gypsy 393301 393615 35 + . . scaffold1255 WUBlastX LTR_Gypsy 393394 393627 59 + . . scaffold1255 WUBlastX LTR_Gypsy 393448 393915 94 + . . scaffold1255 WUBlastX LTR_Gypsy 393918 394307 58 + . . scaffold1255 WUBlastX LTR_Gypsy-Cigr 393998 395692 904 + . . scaffold1255 WUBlastX LTR_Gypsy 394310 396277 1302 + . . scaffold1255 WUBlastX LTR_Gypsy-Cigr 396222 396449 144 + . . scaffold1255 WUBlastX LTR_Gypsy-Cigr 396469 396747 86 + . . scaffold1255 WUBlastX LTR_Gypsy 396481 396816 33 + . . scaffold1255 WUBlastX LTR_Copia 397143 397232 20 + . . scaffold1255 WUBlastX LTR_Copia 397196 397294 24 + . . scaffold1255 TRF Tandem_Repeat 401232 401261 60 + . . scaffold1255 TRF Tandem_Repeat 401259 401301 86 + . . scaffold1255 WUBlastX LINE_Penelope 413019 413111 23 - . . scaffold1255 WUBlastX LINE_Penelope 413126 413593 181 - . . scaffold1255 WUBlastX DNA_TcMar-Tc1 431301 431573 87 - . . scaffold1255 WUBlastX DNA_TcMar-Tc1 431301 431465 93 - . . scaffold1255 WUBlastX DNA_TcMar-Tc1 431548 431937 90 - . . scaffold1255 WUBlastX DNA_TcMar-Tc1 431578 431886 97 - . . scaffold1255 WUBlastX DNA_TcMar-Tc1 431981 432301 41 - . . scaffold1255 WUBlastX DNA_TcMar-Tc1 432038 432301 79 - . . scaffold1255 WUBlastX LINE_RTE-BovB 436353 437183 281 + . . scaffold1255 WUBlastX LINE_RTE-BovB 437161 437511 113 + . . scaffold1255 TRF Tandem_Repeat 438714 438755 57 + . . scaffold1255 TRF Tandem_Repeat 439038 439075 51 + . . scaffold1255 WUBlastX LINE_LOA 469122 469265 23 + . . scaffold1255 WUBlastX LINE_CR1-L2 469475 469564 34 + . . scaffold1255 WUBlastX LINE_L2 469919 470548 125 + . . scaffold1255 WUBlastX LINE_CR1-L2 470030 471748 425 + . . scaffold1255 WUBlastX LINE_L2 471756 471926 59 + . . scaffold1255 GLEAN promoter 472866 473865 0.776794 + . ID=CGI_10018086; scaffold1255 GLEAN mRNA 473866 474087 0.776794 + . ID=CGI_10018086; scaffold1255 WUBlastX DNA_TcMar-Tc1 475347 475460 26 + . . scaffold1255 WUBlastX LINE_L1-Tx1 477693 477899 28 - . . scaffold1255 WUBlastX LINE_L1-Tx1 477738 477932 40 - . . scaffold1255 GLEAN promoter 479822 480821 0.648545 + . ID=CGI_10018087; scaffold1255 GLEAN mRNA 480822 494649 0.648545 + . ID=CGI_10018087; scaffold1255 TRF Tandem_Repeat 487165 487213 98 + . . scaffold1255 TRF Tandem_Repeat 491627 491831 132 + . . scaffold1255 GLEAN mRNA 498550 501445 1 - . ID=CGI_10018088; scaffold1255 GLEAN promoter 501446 502445 1 - . ID=CGI_10018088; scaffold1255 GLEAN mRNA 502076 508764 1 - . ID=CGI_10018089; scaffold1255 GLEAN promoter 508033 509032 0.999372 + . ID=CGI_10018090; scaffold1255 GLEAN promoter 508765 509764 1 - . ID=CGI_10018089; scaffold1255 GLEAN mRNA 509033 509236 0.999372 + . ID=CGI_10018090; scaffold1255 TRF Tandem_Repeat 511267 511379 63 + . . scaffold1255 TRF Tandem_Repeat 511284 511381 92 + . . scaffold1255 WUBlastX LINE_L2 515415 515591 35 - . . scaffold1255 GLEAN mRNA 520566 524902 0.99949 - . ID=CGI_10018091; scaffold1255 TRF Tandem_Repeat 522745 523984 1445 + . . scaffold1255 GLEAN promoter 524903 525902 0.99949 - . ID=CGI_10018091; scaffold1256 GLEAN promoter 4062 5061 1 + . ID=CGI_10005420; scaffold1256 GLEAN mRNA 5062 8851 1 + . ID=CGI_10005420; scaffold1256 TRF Tandem_Repeat 7492 7864 307 + . . scaffold1256 TRF Tandem_Repeat 7492 7864 278 + . . scaffold1256 GLEAN promoter 19370 20369 0.702347 + . ID=CGI_10005421; scaffold1256 GLEAN mRNA 20370 32211 0.702347 + . ID=CGI_10005421; scaffold1256 TRF Tandem_Repeat 32521 32576 112 + . . scaffold1256 TRF Tandem_Repeat 32859 34318 2201 + . . scaffold1256 TRF Tandem_Repeat 32859 34318 2184 + . . scaffold1256 TRF Tandem_Repeat 34349 34396 60 + . . scaffold1256 GLEAN mRNA 36502 41671 0.999676 - . ID=CGI_10005422; scaffold1256 GLEAN promoter 41672 42671 0.999676 - . ID=CGI_10005422; scaffold1256 TRF Tandem_Repeat 42383 42427 90 + . . scaffold1256 TRF Tandem_Repeat 42570 42601 64 + . . scaffold1256 GLEAN mRNA 43625 50560 0.990316 - . ID=CGI_10005423; scaffold1256 GLEAN promoter 50561 51560 0.990316 - . ID=CGI_10005423; scaffold1256 GLEAN mRNA 53442 58092 0.890509 - . ID=CGI_10005424; scaffold1256 GLEAN promoter 58093 59092 0.890509 - . ID=CGI_10005424; scaffold1256 GLEAN mRNA 62943 66216 1 - . ID=CGI_10005425; scaffold1256 GLEAN promoter 66217 67216 1 - . ID=CGI_10005425; scaffold1256 GLEAN mRNA 69035 73116 0.999732 - . ID=CGI_10005426; scaffold1256 TRF Tandem_Repeat 72237 72286 84 + . . scaffold1256 GLEAN promoter 73117 74116 0.999732 - . ID=CGI_10005426; scaffold1256 GLEAN promoter 76329 77328 0.81415 + . ID=CGI_10005427; scaffold1256 GLEAN mRNA 77329 79943 0.81415 + . ID=CGI_10005427; scaffold1256 WUBlastX LTR_Gypsy 78656 79456 245 + . . scaffold1256 WUBlastX DNA_Harbinger 81366 81629 82 - . . scaffold1256 WUBlastX DNA_Harbinger 81432 81629 134 - . . scaffold1256 WUBlastX DNA_Harbinger 83274 83408 75 - . . scaffold1256 WUBlastX DNA_Harbinger 83420 83956 266 - . . scaffold1256 GLEAN promoter 84382 85381 1 + . ID=CGI_10005428; scaffold1256 GLEAN mRNA 85382 86113 1 + . ID=CGI_10005428; scaffold1256 GLEAN promoter 86416 87415 1 + . ID=CGI_10005429; scaffold1256 GLEAN mRNA 87416 88748 1 + . ID=CGI_10005429; scaffold1256 GLEAN promoter 89444 90443 0.997922 + . ID=CGI_10005430; scaffold1256 GLEAN mRNA 90444 103764 0.997922 + . ID=CGI_10005430; scaffold1256 WUBlastX LTR_Ngaro 90459 90830 43 + . . scaffold1256 WUBlastX LTR_Ngaro 90546 90797 68 + . . scaffold1256 WUBlastX LTR_Ngaro 91579 91641 26 + . . scaffold1256 WUBlastX LTR_Ngaro 91626 91703 31 + . . scaffold1256 TRF Tandem_Repeat 93414 93573 148 + . . scaffold1256 TRF Tandem_Repeat 94284 94578 274 + . . scaffold1256 TRF Tandem_Repeat 107088 107132 81 + . . scaffold1256 GLEAN promoter 107425 108424 0.999777 + . ID=CGI_10005431; scaffold1256 TRF Tandem_Repeat 107757 107786 60 + . . scaffold1256 GLEAN mRNA 108425 114997 0.999777 + . ID=CGI_10005431; scaffold1256 TRF Tandem_Repeat 112376 112409 68 + . . scaffold1256 TRF Tandem_Repeat 112583 112635 79 + . . scaffold1256 GLEAN mRNA 115968 125708 0.999676 - . ID=CGI_10005432; scaffold1256 GLEAN promoter 125709 126708 0.999676 - . ID=CGI_10005432; scaffold1258 WUBlastX DNA_Zator 157 261 20 + . . scaffold1258 WUBlastX DNA_Zator 398 562 29 + . . scaffold1258 GLEAN mRNA 1365 7093 0.840346 - . ID=CGI_10023479; scaffold1258 GLEAN promoter 7094 8093 0.840346 - . ID=CGI_10023479; scaffold1258 GLEAN promoter 7398 8397 0.958385 + . ID=CGI_10023480; scaffold1258 GLEAN mRNA 8398 13298 0.958385 + . ID=CGI_10023480; scaffold1258 TRF Tandem_Repeat 9572 9612 82 + . . scaffold1258 TRF Tandem_Repeat 12829 12866 76 + . . scaffold1258 TRF Tandem_Repeat 13375 13418 70 + . . scaffold1258 TRF Tandem_Repeat 13388 13421 50 + . . scaffold1258 GLEAN promoter 13841 14840 0.961547 + . ID=CGI_10023481; scaffold1258 GLEAN mRNA 14841 16017 0.961547 + . ID=CGI_10023481; scaffold1258 GLEAN mRNA 15615 16013 0.734554 - . ID=CGI_10023482; scaffold1258 GLEAN promoter 16014 17013 0.734554 - . ID=CGI_10023482; scaffold1258 GLEAN promoter 17128 18127 0.444518 + . ID=CGI_10023483; scaffold1258 GLEAN mRNA 18128 36344 0.444518 + . ID=CGI_10023483; scaffold1258 TRF Tandem_Repeat 37008 37056 89 + . . scaffold1258 WUBlastX DNA_hAT-Tip100 37917 38159 102 - . . scaffold1258 TRF Tandem_Repeat 41752 41821 140 + . . scaffold1258 TRF Tandem_Repeat 70255 70422 113 + . . scaffold1258 TRF Tandem_Repeat 72110 72143 68 + . . scaffold1258 TRF Tandem_Repeat 74732 74770 78 + . . scaffold1258 TRF Tandem_Repeat 74892 75067 318 + . . scaffold1258 GLEAN mRNA 75642 89115 0.999734 - . ID=CGI_10023484; scaffold1258 TRF Tandem_Repeat 76899 76926 56 + . . scaffold1258 TRF Tandem_Repeat 81775 81998 182 + . . scaffold1258 TRF Tandem_Repeat 86856 87334 374 + . . scaffold1258 TRF Tandem_Repeat 87108 87466 384 + . . scaffold1258 GLEAN promoter 89116 90115 0.999734 - . ID=CGI_10023484; scaffold1258 TRF Tandem_Repeat 96082 97408 1409 + . . scaffold1258 GLEAN mRNA 100970 105720 0.310537 - . ID=CGI_10023485; scaffold1258 GLEAN promoter 105721 106720 0.310537 - . ID=CGI_10023485; scaffold1258 TRF Tandem_Repeat 108906 108953 96 + . . scaffold1258 TRF Tandem_Repeat 111056 111485 702 + . . scaffold1258 TRF Tandem_Repeat 112753 115674 3261 + . . scaffold1258 GLEAN mRNA 118774 131577 1 - . ID=CGI_10023486; scaffold1258 TRF Tandem_Repeat 122456 122819 283 + . . scaffold1258 TRF Tandem_Repeat 122476 122807 213 + . . scaffold1258 TRF Tandem_Repeat 123704 123869 207 + . . scaffold1258 TRF Tandem_Repeat 124592 124696 147 + . . scaffold1258 TRF Tandem_Repeat 129496 129548 106 + . . scaffold1258 TRF Tandem_Repeat 130419 130505 84 + . . scaffold1258 GLEAN promoter 131578 132577 1 - . ID=CGI_10023486; scaffold1258 GLEAN mRNA 131776 137887 0.774946 - . ID=CGI_10023487; scaffold1258 TRF Tandem_Repeat 134792 134841 100 + . . scaffold1258 TRF Tandem_Repeat 136368 136595 375 + . . scaffold1258 GLEAN promoter 137888 138887 0.774946 - . ID=CGI_10023487; scaffold1258 TRF Tandem_Repeat 141095 141140 92 + . . scaffold1258 TRF Tandem_Repeat 141276 141311 72 + . . scaffold1258 TRF Tandem_Repeat 144554 144868 484 + . . scaffold1258 WUBlastX LINE_L1-Tx1 148144 148716 68 - . . scaffold1258 WUBlastX LINE_L1-Tx1 148956 149129 37 - . . scaffold1258 WUBlastX LINE_L1 148986 149129 45 - . . scaffold1258 WUBlastX LINE_L1 149065 149352 76 - . . scaffold1258 WUBlastX LINE_L1-Tx1 149107 149343 108 - . . scaffold1258 WUBlastX LINE_L1-Tx1 149125 149400 73 - . . scaffold1258 WUBlastX LINE_L1-Tx1 150265 150369 24 - . . scaffold1258 TRF Tandem_Repeat 162856 162906 102 + . . scaffold1258 TRF Tandem_Repeat 162904 162957 108 + . . scaffold1258 TRF Tandem_Repeat 184491 184529 78 + . . scaffold1258 TRF Tandem_Repeat 195559 195619 122 + . . scaffold1258 GLEAN mRNA 195618 206786 0.999664 - . ID=CGI_10023488; scaffold1258 GLEAN promoter 206166 207165 0.986649 + . ID=CGI_10023489; scaffold1258 GLEAN promoter 206787 207786 0.999664 - . ID=CGI_10023488; scaffold1258 GLEAN mRNA 207166 209982 0.986649 + . ID=CGI_10023489; scaffold1258 TRF Tandem_Repeat 217596 218161 691 + . . scaffold1258 TRF Tandem_Repeat 217603 218161 679 + . . scaffold1258 GLEAN promoter 218116 219115 1 + . ID=CGI_10023490; scaffold1258 GLEAN mRNA 219116 221265 1 + . ID=CGI_10023490; scaffold1258 GLEAN mRNA 223996 225381 1 - . ID=CGI_10023491; scaffold1258 GLEAN promoter 225382 226381 1 - . ID=CGI_10023491; scaffold1258 GLEAN promoter 226138 227137 0.991221 + . ID=CGI_10023492; scaffold1258 GLEAN mRNA 227138 243984 0.991221 + . ID=CGI_10023492; scaffold1258 TRF Tandem_Repeat 230322 230400 63 + . . scaffold1258 TRF Tandem_Repeat 230422 230508 59 + . . scaffold1258 TRF Tandem_Repeat 230570 230646 57 + . . scaffold1258 TRF Tandem_Repeat 235534 235564 53 + . . scaffold1258 TRF Tandem_Repeat 237409 237587 224 + . . scaffold1258 GLEAN promoter 245777 246776 0.606693 + . ID=CGI_10023493; scaffold1258 GLEAN mRNA 246777 270644 0.606693 + . ID=CGI_10023493; scaffold1258 TRF Tandem_Repeat 252501 252991 662 + . . scaffold1258 TRF Tandem_Repeat 253026 253406 470 + . . scaffold1258 TRF Tandem_Repeat 253026 253406 473 + . . scaffold1258 TRF Tandem_Repeat 257717 257830 129 + . . scaffold1258 TRF Tandem_Repeat 266715 266971 205 + . . scaffold1258 GLEAN promoter 270760 271759 0.651134 + . ID=CGI_10023494; scaffold1258 GLEAN mRNA 271760 288448 0.651134 + . ID=CGI_10023494; scaffold1258 GLEAN mRNA 276759 278205 1 - . ID=CGI_10023495; scaffold1258 GLEAN promoter 278206 279205 1 - . ID=CGI_10023495; scaffold1258 TRF Tandem_Repeat 280730 282733 3112 + . . scaffold1258 TRF Tandem_Repeat 295603 295643 82 + . . scaffold1258 WUBlastX LINE_RTE-X 297233 297535 73 - . . scaffold1258 WUBlastX LINE_RTE-X 297290 297538 84 - . . scaffold1258 TRF Tandem_Repeat 297853 297892 80 + . . scaffold1258 GLEAN promoter 299852 300851 0.998492 + . ID=CGI_10023496; scaffold1258 GLEAN mRNA 300852 308537 0.998492 + . ID=CGI_10023496; scaffold1258 TRF Tandem_Repeat 307922 307959 58 + . . scaffold1258 WUBlastX DNA_En-Spm 309346 309822 160 + . . scaffold1258 TRF Tandem_Repeat 341324 341360 74 + . . scaffold1258 TRF Tandem_Repeat 341360 341423 128 + . . scaffold1258 TRF Tandem_Repeat 354747 354796 91 + . . scaffold1258 GLEAN mRNA 370084 386398 0.650923 - . ID=CGI_10023497; scaffold1258 TRF Tandem_Repeat 383533 383571 51 + . . scaffold1258 TRF Tandem_Repeat 383535 383569 52 + . . scaffold1258 GLEAN promoter 386399 387398 0.650923 - . ID=CGI_10023497; scaffold1258 GLEAN mRNA 387140 390412 0.79429 - . ID=CGI_10023498; scaffold1258 GLEAN promoter 390413 391412 0.79429 - . ID=CGI_10023498; scaffold1258 WUBlastX LTR_Gypsy 392395 394455 1014 - . . scaffold1258 WUBlastX LTR_Gypsy 392845 394455 1075 - . . scaffold1258 TRF Tandem_Repeat 401186 401215 60 + . . scaffold1258 TRF Tandem_Repeat 401215 401257 86 + . . scaffold1258 TRF Tandem_Repeat 410739 410765 54 + . . scaffold1258 TRF Tandem_Repeat 410763 410812 100 + . . scaffold1258 TRF Tandem_Repeat 433464 433539 89 + . . scaffold1258 TRF Tandem_Repeat 433560 433600 64 + . . scaffold1258 TRF Tandem_Repeat 434694 434738 90 + . . scaffold1258 TRF Tandem_Repeat 441911 442075 294 + . . scaffold1258 TRF Tandem_Repeat 453605 453654 100 + . . scaffold1258 TRF Tandem_Repeat 455166 456512 1549 + . . scaffold1258 TRF Tandem_Repeat 455206 456515 1845 + . . scaffold1258 GLEAN promoter 458032 459031 0.999787 + . ID=CGI_10023499; scaffold1258 GLEAN mRNA 459032 459367 0.999787 + . ID=CGI_10023499; scaffold1258 TRF Tandem_Repeat 461943 462014 144 + . . scaffold1258 TRF Tandem_Repeat 465339 465386 96 + . . scaffold1258 TRF Tandem_Repeat 465499 465992 679 + . . scaffold1258 TRF Tandem_Repeat 473294 473365 144 + . . scaffold1258 TRF Tandem_Repeat 478474 478528 65 + . . scaffold1258 TRF Tandem_Repeat 478477 478532 71 + . . scaffold1258 TRF Tandem_Repeat 483233 483272 80 + . . scaffold1258 TRF Tandem_Repeat 483387 483427 75 + . . scaffold1258 TRF Tandem_Repeat 484760 484806 85 + . . scaffold1258 GLEAN promoter 485186 486185 1 + . ID=CGI_10023500; scaffold1258 GLEAN mRNA 486186 491966 1 + . ID=CGI_10023500; scaffold1258 TRF Tandem_Repeat 487723 487774 104 + . . scaffold1258 TRF Tandem_Repeat 496569 496604 72 + . . scaffold1258 TRF Tandem_Repeat 502458 502489 64 + . . scaffold1258 GLEAN mRNA 504998 507127 0.937847 - . ID=CGI_10023501; scaffold1258 GLEAN promoter 507128 508127 0.937847 - . ID=CGI_10023501; scaffold1258 TRF Tandem_Repeat 507841 507867 54 + . . scaffold1258 GLEAN promoter 517892 518891 0.992656 + . ID=CGI_10023502; scaffold1258 GLEAN mRNA 518892 521532 0.992656 + . ID=CGI_10023502; scaffold1258 WUBlastX DNA_TcMar-Tc1 526633 526779 38 - . . scaffold1258 WUBlastX DNA_TcMar-Tc1 526669 526788 48 - . . scaffold1258 WUBlastX DNA_TcMar-Tc1 526722 527252 138 - . . scaffold1258 WUBlastX DNA_TcMar-Tc1 526851 527351 62 - . . scaffold1258 WUBlastX DNA_TcMar-Tc1 526851 527270 224 - . . scaffold1258 WUBlastX DNA_TcMar-Tc1 527360 527410 20 - . . scaffold1258 GLEAN promoter 534431 535430 0.69447 + . ID=CGI_10023504; scaffold1258 GLEAN mRNA 535431 535997 0.69447 + . ID=CGI_10023504; scaffold1258 GLEAN mRNA 539666 544893 0.391169 - . ID=CGI_10023505; scaffold1258 TRF Tandem_Repeat 541185 541222 76 + . . scaffold1258 TRF Tandem_Repeat 541221 541245 50 + . . scaffold1258 TRF Tandem_Repeat 541962 541994 66 + . . scaffold1258 GLEAN promoter 544894 545893 0.391169 - . ID=CGI_10023505; scaffold1258 TRF Tandem_Repeat 548653 548725 146 + . . scaffold1258 WUBlastX LINE_Penelope 549084 549908 262 - . . scaffold1258 WUBlastX LINE_Penelope 549935 550309 149 - . . scaffold1258 WUBlastX LINE_Penelope 549935 550219 175 - . . scaffold1258 WUBlastX LINE_CR1-L2 566642 566728 30 + . . scaffold1258 WUBlastX LINE_L2 566698 567048 88 + . . scaffold1258 WUBlastX LINE_RTE-X 567792 570269 1515 + . . scaffold1258 WUBlastX LINE_RTE-X 569646 570398 103 + . . scaffold1258 WUBlastX LINE_RTE-X 570938 571297 36 - . . scaffold1258 WUBlastX LINE_RTE-X 571037 571276 56 - . . scaffold1258 TRF Tandem_Repeat 573072 573166 86 + . . scaffold1258 TRF Tandem_Repeat 573072 573164 77 + . . scaffold1258 TRF Tandem_Repeat 580135 580222 74 + . . scaffold1258 GLEAN promoter 583556 584555 0.999867 + . ID=CGI_10023506; scaffold1258 TRF Tandem_Repeat 584497 584538 84 + . . scaffold1258 GLEAN mRNA 584556 586651 0.999867 + . ID=CGI_10023506; scaffold1258 TRF Tandem_Repeat 589764 589797 52 + . . scaffold1258 GLEAN promoter 593079 594078 1 + . ID=CGI_10023507; scaffold1258 GLEAN mRNA 594079 595288 1 + . ID=CGI_10023507; scaffold1258 TRF Tandem_Repeat 599690 599745 112 + . . scaffold1258 TRF Tandem_Repeat 599857 599943 113 + . . scaffold1258 TRF Tandem_Repeat 600028 600160 160 + . . scaffold1258 TRF Tandem_Repeat 600195 600302 135 + . . scaffold1258 TRF Tandem_Repeat 600376 600464 106 + . . scaffold1258 GLEAN mRNA 602122 602754 0.948998 - . ID=CGI_10023508; scaffold1258 GLEAN promoter 602755 603754 0.948998 - . ID=CGI_10023508; scaffold1258 TRF Tandem_Repeat 602963 603006 54 + . . scaffold1258 TRF Tandem_Repeat 607550 607640 146 + . . scaffold1258 TRF Tandem_Repeat 607551 607724 129 + . . scaffold1258 TRF Tandem_Repeat 607720 607938 231 + . . scaffold1258 TRF Tandem_Repeat 617047 617074 56 + . . scaffold1258 TRF Tandem_Repeat 617146 617210 121 + . . scaffold1258 TRF Tandem_Repeat 617210 617237 56 + . . scaffold1258 TRF Tandem_Repeat 620306 620560 232 + . . scaffold1258 GLEAN mRNA 632490 668544 0.92041 - . ID=CGI_10023509; scaffold1258 TRF Tandem_Repeat 650399 650547 57 + . . scaffold1258 TRF Tandem_Repeat 651499 652341 708 + . . scaffold1258 TRF Tandem_Repeat 651505 652249 953 + . . scaffold1258 TRF Tandem_Repeat 658385 658492 189 + . . scaffold1258 GLEAN promoter 668545 669544 0.92041 - . ID=CGI_10023509; scaffold1258 TRF Tandem_Repeat 670871 670931 122 + . . scaffold1258 TRF Tandem_Repeat 696277 696334 116 + . . scaffold1258 WUBlastX LTR_Gypsy 703465 704160 300 + . . scaffold1258 WUBlastX LTR_Gypsy 703465 704454 25 + . . scaffold1258 WUBlastX LTR_Gypsy 703465 704295 144 + . . scaffold1258 WUBlastX LTR_Gypsy 704941 705015 24 + . . scaffold1258 TRF Tandem_Repeat 713643 713688 58 + . . scaffold1258 GLEAN promoter 720114 721113 1 + . ID=CGI_10023510; scaffold1258 GLEAN mRNA 721114 726365 1 + . ID=CGI_10023510; scaffold1258 TRF Tandem_Repeat 722691 722991 458 + . . scaffold1258 TRF Tandem_Repeat 733814 734086 483 + . . scaffold1258 GLEAN mRNA 736071 753674 0.985984 - . ID=CGI_10023511; scaffold1258 TRF Tandem_Repeat 738066 738113 96 + . . scaffold1258 TRF Tandem_Repeat 742328 742375 96 + . . scaffold1258 TRF Tandem_Repeat 746800 746853 90 + . . scaffold1258 TRF Tandem_Repeat 747198 747270 101 + . . scaffold1258 TRF Tandem_Repeat 748175 748422 212 + . . scaffold1258 TRF Tandem_Repeat 748186 748395 258 + . . scaffold1258 GLEAN promoter 753675 754674 0.985984 - . ID=CGI_10023511; scaffold1258 GLEAN mRNA 771870 789822 0.994737 - . ID=CGI_10023512; scaffold1258 TRF Tandem_Repeat 781638 781738 139 + . . scaffold1258 TRF Tandem_Repeat 787688 787715 56 + . . scaffold1258 GLEAN promoter 789823 790822 0.994737 - . ID=CGI_10023512; scaffold1258 GLEAN mRNA 789902 820003 0.926741 - . ID=CGI_10023513; scaffold1258 TRF Tandem_Repeat 791217 791407 165 + . . scaffold1258 TRF Tandem_Repeat 818230 818274 90 + . . scaffold1258 GLEAN promoter 820004 821003 0.926741 - . ID=CGI_10023513; scaffold1258 TRF Tandem_Repeat 823010 823064 110 + . . scaffold1258 TRF Tandem_Repeat 823150 823220 135 + . . scaffold1258 GLEAN mRNA 827844 835273 0.999981 - . ID=CGI_10023514; scaffold1258 GLEAN promoter 835274 836273 0.999981 - . ID=CGI_10023514; scaffold1258 WUBlastX DNA_Maverick 840382 841632 193 + . . scaffold1258 WUBlastX DNA_Maverick 841426 842319 37 + . . scaffold1258 WUBlastX DNA_Maverick 841918 842469 198 + . . scaffold1258 WUBlastX DNA_Maverick 842149 842751 91 + . . scaffold1258 WUBlastX DNA_Maverick 842563 842766 129 + . . scaffold1258 WUBlastX DNA_Maverick 842791 843117 91 + . . scaffold1258 WUBlastX DNA_Maverick 843169 844233 444 + . . scaffold1258 WUBlastX DNA_Maverick 843595 844404 109 + . . scaffold1258 WUBlastX DNA_Maverick 844802 845440 371 + . . scaffold1258 WUBlastX LTR_Copia 845958 846026 27 + . . scaffold1258 WUBlastX DNA_Maverick 846073 847173 511 + . . scaffold1258 WUBlastX LTR_Gypsy 847021 847203 67 + . . scaffold1258 WUBlastX DNA_Maverick 847281 847625 27 + . . scaffold1258 WUBlastX DNA_Maverick 848061 849302 540 + . . scaffold1258 WUBlastX DNA_Maverick 849305 849739 146 + . . scaffold1258 WUBlastX DNA_Maverick 849305 849838 99 + . . scaffold1258 TRF Tandem_Repeat 850378 850403 52 + . . scaffold1259 TRF Tandem_Repeat 388 2238 1762 + . . scaffold1259 GLEAN mRNA 7185 21560 0.723207 - . ID=CGI_10005496; scaffold1259 TRF Tandem_Repeat 10045 10205 159 + . . scaffold1259 WUBlastX LINE_L2 12574 13065 91 + . . scaffold1259 WUBlastX LINE_L2 12676 13083 125 + . . scaffold1259 WUBlastX LINE_CR1-L2 12781 13083 130 + . . scaffold1259 WUBlastX LINE_L2 13010 13333 46 + . . scaffold1259 WUBlastX LINE_L1 13109 13300 77 + . . scaffold1259 WUBlastX DNA_MuDR 14808 15254 62 - . . scaffold1259 WUBlastX DNA_MuDR 15474 15635 42 - . . scaffold1259 WUBlastX DNA 15516 15635 50 - . . scaffold1259 WUBlastX DNA_MuDR 15516 15707 44 - . . scaffold1259 WUBlastX DNA_MuDR 15722 16036 39 - . . scaffold1259 WUBlastX DNA_MuDR 15821 16027 60 - . . scaffold1259 WUBlastX DNA_MuDR 15833 16078 55 - . . scaffold1259 WUBlastX DNA_MuDR 16589 16795 22 - . . scaffold1259 WUBlastX LINE_CR1 17932 18102 40 - . . scaffold1259 WUBlastX LINE_L1 19306 19641 100 - . . scaffold1259 WUBlastX LINE_L1-Tx1 19306 19485 147 - . . scaffold1259 WUBlastX LINE_L1 19306 19518 133 - . . scaffold1259 GLEAN promoter 21561 22560 0.723207 - . ID=CGI_10005496; scaffold1259 GLEAN mRNA 22957 28860 0.737922 - . ID=CGI_10005497; scaffold1259 TRF Tandem_Repeat 28592 28688 94 + . . scaffold1259 GLEAN promoter 28861 29860 0.737922 - . ID=CGI_10005497; scaffold1259 WUBlastX DNA_Maverick 36664 37029 90 + . . scaffold1259 WUBlastX LTR_Foamy 36996 37235 73 + . . scaffold1259 WUBlastX LTR_Gypsy 37367 37636 20 + . . scaffold1259 TRF Tandem_Repeat 40241 40275 70 + . . scaffold1259 TRF Tandem_Repeat 40859 40906 96 + . . scaffold1259 TRF Tandem_Repeat 46070 46129 75 + . . scaffold1259 TRF Tandem_Repeat 47828 48049 336 + . . scaffold1259 TRF Tandem_Repeat 57439 57464 52 + . . scaffold1259 WUBlastX LTR_Gypsy 58038 58481 32 + . . scaffold1259 GLEAN promoter 58917 59916 0.999878 + . ID=CGI_10005498; scaffold1259 GLEAN mRNA 59917 63058 0.999878 + . ID=CGI_10005498; scaffold1259 TRF Tandem_Repeat 60350 60380 53 + . . scaffold1259 TRF Tandem_Repeat 60447 60475 58 + . . scaffold1259 TRF Tandem_Repeat 65620 65842 277 + . . scaffold1259 TRF Tandem_Repeat 112862 112910 89 + . . scaffold1259 WUBlastX LINE_Penelope 113152 114627 651 + . . scaffold1259 WUBlastX LINE_Penelope 114433 114696 29 + . . scaffold1259 TRF Tandem_Repeat 116688 116751 74 + . . scaffold126 GLEAN promoter 4314 5313 0.367217 + . ID=CGI_10019178; scaffold126 TRF Tandem_Repeat 5072 5216 272 + . . scaffold126 GLEAN mRNA 5314 7078 0.367217 + . ID=CGI_10019178; scaffold126 TRF Tandem_Repeat 7436 7485 73 + . . scaffold126 TRF Tandem_Repeat 8983 9041 118 + . . scaffold126 WUBlastX LTR_Gypsy 10002 10169 135 - . . scaffold126 WUBlastX LTR_Gypsy 10118 10972 231 - . . scaffold126 WUBlastX LTR_Gypsy 10187 10876 606 - . . scaffold126 WUBlastX LTR_Gypsy 10957 11481 257 - . . scaffold126 WUBlastX LTR_Gypsy 10957 11397 348 - . . scaffold126 WUBlastX LTR_Gypsy 11396 11791 127 - . . scaffold126 WUBlastX DNA_Harbinger 14354 14731 25 - . . scaffold126 WUBlastX DNA_Harbinger 14354 14650 59 - . . scaffold126 WUBlastX LINE_RTE-X 32743 33864 171 - . . scaffold126 WUBlastX LINE_RTE-X 32905 34170 168 - . . scaffold126 WUBlastX LINE_RTE-X 32917 33864 247 - . . scaffold126 TRF Tandem_Repeat 49973 50065 78 + . . scaffold126 TRF Tandem_Repeat 56655 57360 855 + . . scaffold126 TRF Tandem_Repeat 69017 70136 1549 + . . scaffold126 TRF Tandem_Repeat 70167 70210 70 + . . scaffold126 GLEAN promoter 71071 72070 0.988186 + . ID=CGI_10019179; scaffold126 WUBlastX DNA_Harbinger 71990 72202 69 + . . scaffold126 WUBlastX DNA_Harbinger 72041 72184 79 + . . scaffold126 GLEAN mRNA 72071 89869 0.988186 + . ID=CGI_10019179; scaffold126 TRF Tandem_Repeat 73006 73065 104 + . . scaffold126 WUBlastX DNA_IS4EU 92552 92752 33 + . . scaffold126 WUBlastX DNA_IS4EU 93483 93584 44 + . . scaffold126 WUBlastX DNA_IS4EU 93704 93952 38 + . . scaffold126 WUBlastX LINE_RTE-BovB 106117 107460 453 + . . scaffold126 TRF Tandem_Repeat 140299 140344 83 + . . scaffold126 WUBlastX LTR_Gypsy 144668 144775 22 + . . scaffold126 WUBlastX LTR_Gypsy 144849 146810 617 + . . scaffold126 WUBlastX LTR_Gypsy 146798 146986 111 + . . scaffold126 WUBlastX LTR_Gypsy 146798 147130 95 + . . scaffold126 WUBlastX LTR_Gypsy 146798 147070 111 + . . scaffold126 WUBlastX LTR_Gypsy 146837 147184 53 + . . scaffold126 WUBlastX LTR_Gypsy 147246 147779 314 + . . scaffold126 WUBlastX LTR_Gypsy 147339 147962 302 + . . scaffold126 WUBlastX LTR_Gypsy 148016 148072 20 + . . scaffold126 TRF Tandem_Repeat 152492 152517 52 + . . scaffold126 WUBlastX LTR_Pao 157469 157984 118 - . . scaffold126 WUBlastX LTR_Pao 157469 157870 164 - . . scaffold126 WUBlastX LTR_Pao 157469 157777 193 - . . scaffold126 GLEAN mRNA 160618 160848 0.999372 - . ID=CGI_10019180; scaffold126 GLEAN promoter 160849 161848 0.999372 - . ID=CGI_10019180; scaffold126 GLEAN mRNA 161725 161904 0.999372 - . ID=CGI_10019181; scaffold126 GLEAN promoter 161905 162904 0.999372 - . ID=CGI_10019181; scaffold126 GLEAN promoter 179505 180504 0.835438 + . ID=CGI_10019182; scaffold126 GLEAN mRNA 180505 199508 0.835438 + . ID=CGI_10019182; scaffold126 GLEAN mRNA 186722 188463 1 - . ID=CGI_10019183; scaffold126 GLEAN promoter 188464 189463 1 - . ID=CGI_10019183; scaffold126 GLEAN mRNA 190021 202782 0.985607 - . ID=CGI_10019184; scaffold126 TRF Tandem_Repeat 191700 191816 74 + . . scaffold126 TRF Tandem_Repeat 195530 195590 58 + . . scaffold126 GLEAN promoter 202783 203782 0.985607 - . ID=CGI_10019184; scaffold126 GLEAN mRNA 205264 205692 0.776612 - . ID=CGI_10019185; scaffold126 GLEAN promoter 205693 206692 0.776612 - . ID=CGI_10019185; scaffold126 TRF Tandem_Repeat 213284 214302 1389 + . . scaffold126 GLEAN promoter 214728 215727 0.491639 + . ID=CGI_10019186; scaffold126 GLEAN mRNA 215728 221364 0.491639 + . ID=CGI_10019186; scaffold126 TRF Tandem_Repeat 216701 217495 261 + . . scaffold126 TRF Tandem_Repeat 216884 217535 885 + . . scaffold126 WUBlastX LINE_Rex-Babar 219076 220056 156 + . . scaffold126 WUBlastX LINE_L2 219259 220884 929 + . . scaffold126 WUBlastX LINE_CR1 221642 221728 21 + . . scaffold126 WUBlastX LTR_Ngaro 227897 228676 102 - . . scaffold126 WUBlastX LTR_Ngaro 228074 228550 224 - . . scaffold126 WUBlastX LTR_Ngaro 228128 228796 196 - . . scaffold126 WUBlastX DNA_Kolobok 232735 233358 62 - . . scaffold126 WUBlastX DNA_P 233620 233940 92 - . . scaffold126 WUBlastX DNA_Kolobok-IS4 233764 234069 65 - . . scaffold126 WUBlastX LINE_L1-Tx1 234201 234479 73 - . . scaffold126 WUBlastX LINE_L1 234466 234546 30 - . . scaffold126 WUBlastX LINE_L1-Tx1 234466 234588 24 - . . scaffold126 WUBlastX LINE_L1-Tx1 235408 235674 46 - . . scaffold126 WUBlastX LINE_L1-Tx1 235665 235817 33 - . . scaffold126 WUBlastX LINE_L1 235674 235853 24 - . . scaffold126 WUBlastX LINE_L1-Tx1 235674 235760 57 - . . scaffold126 WUBlastX LINE_L1-Tx1 235674 235784 42 - . . scaffold126 WUBlastX LINE_L1 236639 236734 27 - . . scaffold126 WUBlastX LINE_L1 236639 236707 43 - . . scaffold126 WUBlastX LINE_L1-Tx1 236706 236777 23 - . . scaffold126 WUBlastX LINE_L1 237109 237339 44 - . . scaffold126 WUBlastX LINE_L1-Tx1 237268 237357 35 - . . scaffold126 TRF Tandem_Repeat 247292 247349 53 + . . scaffold126 TRF Tandem_Repeat 248368 248396 58 + . . scaffold126 TRF Tandem_Repeat 248591 248631 82 + . . scaffold126 GLEAN promoter 249553 250552 0.648545 + . ID=CGI_10019187; scaffold126 GLEAN promoter 250015 251014 0.999956 + . ID=CGI_10019188; scaffold126 TRF Tandem_Repeat 250173 250263 73 + . . scaffold126 TRF Tandem_Repeat 250249 250309 50 + . . scaffold126 GLEAN mRNA 250553 250933 0.648545 + . ID=CGI_10019187; scaffold126 GLEAN mRNA 251015 257085 0.999956 + . ID=CGI_10019188; scaffold126 WUBlastX DNA_IS4EU 251921 252346 112 - . . scaffold126 WUBlastX DNA_Kolobok-IS4 251927 252268 135 - . . scaffold126 WUBlastX DNA_IS4EU 252491 252592 33 - . . scaffold126 WUBlastX DNA_IS4EU 252500 252625 29 - . . scaffold126 TRF Tandem_Repeat 252766 252809 70 + . . scaffold126 WUBlastX DNA_IS4EU 253377 253865 52 - . . scaffold126 GLEAN promoter 256130 257129 0.994487 + . ID=CGI_10019189; scaffold126 GLEAN mRNA 257130 257330 0.994487 + . ID=CGI_10019189; scaffold126 WUBlastX DNA_Maverick 257506 258114 426 + . . scaffold126 GLEAN mRNA 263019 265010 0.999919 - . ID=CGI_10019190; scaffold126 GLEAN promoter 265011 266010 0.999919 - . ID=CGI_10019190; scaffold126 GLEAN mRNA 265266 272636 0.813518 - . ID=CGI_10019191; scaffold126 WUBlastX LTR_Gypsy 271185 271526 100 + . . scaffold126 GLEAN promoter 272637 273636 0.813518 - . ID=CGI_10019191; scaffold126 WUBlastX LTR_Gypsy 277325 277711 49 + . . scaffold126 WUBlastX LTR_Gypsy 277691 278389 42 + . . scaffold126 WUBlastX LTR_Gypsy 277868 279352 227 + . . scaffold126 WUBlastX LTR_Gypsy 278111 279403 459 + . . scaffold126 TRF Tandem_Repeat 280463 280504 50 + . . scaffold126 TRF Tandem_Repeat 280556 280690 69 + . . scaffold126 TRF Tandem_Repeat 280579 280782 311 + . . scaffold126 GLEAN mRNA 283665 285404 1 - . ID=CGI_10019192; scaffold126 GLEAN promoter 285405 286404 1 - . ID=CGI_10019192; scaffold126 TRF Tandem_Repeat 319881 319934 108 + . . scaffold126 WUBlastX LINE_I 322523 322588 21 - . . scaffold126 WUBlastX LINE_RTE-X 323162 323941 279 - . . scaffold126 WUBlastX LINE_RTE-BovB 323780 324022 29 - . . scaffold126 WUBlastX LINE_RTE-X 324036 325979 167 - . . scaffold126 WUBlastX LINE_RTE-X 324483 325025 188 - . . scaffold126 WUBlastX LINE_RTE-X 324582 326558 388 - . . scaffold126 WUBlastX LINE_L1 326589 327209 78 - . . scaffold126 WUBlastX LINE_L1 326754 327248 245 - . . scaffold126 TRF Tandem_Repeat 327713 327753 82 + . . scaffold126 TRF Tandem_Repeat 327836 327899 119 + . . scaffold126 TRF Tandem_Repeat 328071 328139 129 + . . scaffold126 GLEAN mRNA 331126 331455 1 - . ID=CGI_10019193; scaffold126 GLEAN promoter 331456 332455 1 - . ID=CGI_10019193; scaffold126 GLEAN mRNA 334382 361232 0.917458 - . ID=CGI_10019194; scaffold126 GLEAN promoter 361233 362232 0.917458 - . ID=CGI_10019194; scaffold126 TRF Tandem_Repeat 364314 365109 1193 + . . scaffold126 GLEAN promoter 365776 366775 0.718959 + . ID=CGI_10019195; scaffold126 GLEAN mRNA 366776 367075 0.718959 + . ID=CGI_10019195; scaffold126 WUBlastX DNA_Harbinger 368498 368737 176 - . . scaffold126 WUBlastX DNA_Harbinger 368774 369829 1017 - . . scaffold126 TRF Tandem_Repeat 375819 375902 82 + . . scaffold126 WUBlastX LINE_RTE-X 377051 377431 38 - . . scaffold126 WUBlastX LTR_Ngaro 377678 377800 73 - . . scaffold126 WUBlastX LTR_Ngaro 377809 378144 119 - . . scaffold126 WUBlastX LTR_Ngaro 378144 378512 77 - . . scaffold126 WUBlastX LTR_Ngaro 378558 378905 168 - . . scaffold126 WUBlastX LTR_Ngaro 378949 380157 841 - . . scaffold126 WUBlastX LTR_Ngaro 380225 380755 90 - . . scaffold126 WUBlastX LTR_Ngaro 380423 380695 133 - . . scaffold126 WUBlastX LTR_Ngaro 380760 380843 44 - . . scaffold126 WUBlastX LTR_Ngaro 380760 380927 32 - . . scaffold126 TRF Tandem_Repeat 383469 383495 54 + . . scaffold126 GLEAN promoter 386636 387635 0.997493 + . ID=CGI_10019196; scaffold126 WUBlastX DNA_IS4EU 387177 387539 50 + . . scaffold126 GLEAN mRNA 387636 399699 0.997493 + . ID=CGI_10019196; scaffold126 WUBlastX DNA_IS4EU 387864 388868 601 + . . scaffold126 TRF Tandem_Repeat 392984 393050 89 + . . scaffold126 TRF Tandem_Repeat 398841 398871 62 + . . scaffold126 WUBlastX DNA_Harbinger 400822 401418 90 - . . scaffold126 GLEAN promoter 400847 401846 0.306208 + . ID=CGI_10019197; scaffold126 GLEAN mRNA 401847 409297 0.306208 + . ID=CGI_10019197; scaffold126 TRF Tandem_Repeat 406752 406796 74 + . . scaffold126 TRF Tandem_Repeat 409363 409415 52 + . . scaffold126 TRF Tandem_Repeat 411839 411863 50 + . . scaffold126 TRF Tandem_Repeat 416230 417175 1084 + . . scaffold126 WUBlastX DNA_Kolobok 418479 418583 38 + . . scaffold126 WUBlastX DNA_Kolobok 418743 419000 46 + . . scaffold126 WUBlastX DNA_Kolobok 419160 419279 47 - . . scaffold126 TRF Tandem_Repeat 444453 445360 1320 + . . scaffold126 GLEAN mRNA 446331 447873 0.998333 - . ID=CGI_10019198; scaffold126 GLEAN promoter 446913 447912 0.999981 + . ID=CGI_10019199; scaffold126 GLEAN promoter 447874 448873 0.998333 - . ID=CGI_10019198; scaffold126 GLEAN mRNA 447913 450207 0.999981 + . ID=CGI_10019199; scaffold126 TRF Tandem_Repeat 455125 456225 1421 + . . scaffold126 TRF Tandem_Repeat 455125 456206 1291 + . . scaffold126 TRF Tandem_Repeat 455125 456225 1417 + . . scaffold126 TRF Tandem_Repeat 465660 465725 132 + . . scaffold126 TRF Tandem_Repeat 470858 470933 152 + . . scaffold126 WUBlastX LTR_Gypsy 474694 474948 45 + . . scaffold126 WUBlastX LTR_Gypsy 474796 475605 40 + . . scaffold126 WUBlastX LTR_Gypsy-Cigr 474826 475014 64 + . . scaffold126 WUBlastX LTR_Gypsy 475399 476430 187 + . . scaffold126 WUBlastX LTR_Gypsy-Cigr 475669 476406 231 + . . scaffold126 WUBlastX LTR_Gypsy 476981 477448 195 + . . scaffold126 WUBlastX LTR_Gypsy-Cigr 477065 477454 369 + . . scaffold126 WUBlastX LTR_Gypsy 477421 477744 245 + . . scaffold126 WUBlastX LTR_Gypsy 477744 478757 390 + . . scaffold126 WUBlastX LTR_Gypsy-Cigr 478741 479520 469 + . . scaffold126 WUBlastX LTR_Gypsy 478744 479301 480 + . . scaffold126 TRF Tandem_Repeat 479685 479722 58 + . . scaffold126 TRF Tandem_Repeat 480706 481507 1015 + . . scaffold126 TRF Tandem_Repeat 484318 484351 68 + . . scaffold126 TRF Tandem_Repeat 485767 485820 99 + . . scaffold126 WUBlastX LTR_Ngaro 509420 509596 97 - . . scaffold126 WUBlastX LTR_Ngaro 509420 509770 95 - . . scaffold126 WUBlastX DNA_Maverick 524640 525422 294 - . . scaffold126 WUBlastX DNA_Maverick 525078 525500 116 - . . scaffold126 WUBlastX DNA_Maverick 525499 525675 50 - . . scaffold126 WUBlastX DNA_Maverick 526396 526884 247 - . . scaffold126 WUBlastX DNA_Maverick 526510 526953 149 - . . scaffold126 WUBlastX DNA_Maverick 528448 529518 235 + . . scaffold126 WUBlastX DNA_Maverick 529719 530171 46 + . . scaffold126 WUBlastX DNA_Maverick 529947 530204 149 + . . scaffold126 WUBlastX DNA_Maverick 530216 532186 782 + . . scaffold126 WUBlastX LTR_Gypsy 539185 539922 472 + . . scaffold126 WUBlastX LTR_Gypsy 539221 540165 132 + . . scaffold126 WUBlastX LTR_Gypsy 542005 542286 98 + . . scaffold126 WUBlastX LTR_Gypsy 545434 545922 179 + . . scaffold126 WUBlastX LTR_Gypsy 545524 545931 435 + . . scaffold126 WUBlastX LTR_Gypsy 545539 546045 158 + . . scaffold126 WUBlastX LTR_Gypsy 546346 547086 154 + . . scaffold126 WUBlastX LTR_Gypsy 546469 547092 342 + . . scaffold126 WUBlastX LTR_Gypsy 546619 547725 525 + . . scaffold126 WUBlastX LTR_Gypsy 547549 547770 73 + . . scaffold126 WUBlastX LTR_Gypsy 547725 547823 56 + . . scaffold126 WUBlastX LTR_Gypsy 547728 547850 40 + . . scaffold126 TRF Tandem_Repeat 556515 556552 51 + . . scaffold126 WUBlastX LINE_L1 570279 570335 20 + . . scaffold126 WUBlastX LINE_L1-Tx1 570337 570615 40 + . . scaffold126 WUBlastX LINE_L1-Tx1 570621 570764 42 + . . scaffold126 WUBlastX LINE_L1 570683 571090 32 - . . scaffold126 WUBlastX LINE_L1-Tx1 570731 570898 119 - . . scaffold126 WUBlastX LINE_L1-Tx1 570776 570931 106 - . . scaffold126 WUBlastX LINE_L1 571080 571355 40 + . . scaffold126 WUBlastX LINE_L1-Tx1 571203 571610 23 + . . scaffold126 WUBlastX LINE_L1-Tx1 571203 571463 62 + . . scaffold126 WUBlastX LINE_L1-Tx1 571203 571409 90 + . . scaffold126 WUBlastX LINE_L1 571406 571546 60 + . . scaffold126 WUBlastX LTR_Gypsy 572316 572375 20 - . . scaffold126 WUBlastX LTR_Gypsy 572405 574615 543 - . . scaffold126 WUBlastX LTR_Gypsy-Cigr 572555 574378 1117 - . . scaffold126 WUBlastX LTR_Gypsy 574603 575142 122 - . . scaffold126 GLEAN promoter 575864 576863 0.999598 + . ID=CGI_10019200; scaffold126 GLEAN mRNA 576864 580670 0.999598 + . ID=CGI_10019200; scaffold126 WUBlastX DNA_MuDR 579025 579267 86 + . . scaffold126 WUBlastX DNA_MuDR 579064 579261 97 + . . scaffold126 WUBlastX DNA_MuDR 579358 579612 63 + . . scaffold126 WUBlastX DNA_MuDR 579436 579603 82 + . . scaffold126 WUBlastX DNA_MuDR 579445 579690 48 + . . scaffold126 WUBlastX DNA_MuDR 579734 580051 64 + . . scaffold126 WUBlastX DNA_MuDR 579743 579997 79 + . . scaffold126 WUBlastX LTR_Gypsy-Cigr 581435 581674 54 - . . scaffold126 WUBlastX LTR_Gypsy 585568 585816 112 + . . scaffold126 WUBlastX LTR_Gypsy 585652 587037 508 + . . scaffold126 WUBlastX LTR_Gypsy 586060 587352 978 + . . scaffold126 WUBlastX LTR_Gypsy 586897 587508 181 + . . scaffold1260 GLEAN mRNA 1840 3507 0.986676 - . ID=CGI_10005941; scaffold1260 GLEAN promoter 3508 4507 0.986676 - . ID=CGI_10005941; scaffold1260 TRF Tandem_Repeat 37416 37440 50 + . . scaffold1260 TRF Tandem_Repeat 37958 38024 98 + . . scaffold1260 TRF Tandem_Repeat 45919 45953 52 + . . scaffold1260 TRF Tandem_Repeat 45958 46614 959 + . . scaffold1260 GLEAN promoter 46189 47188 0.842291 + . ID=CGI_10005942; scaffold1260 GLEAN mRNA 47189 52079 0.842291 + . ID=CGI_10005942; scaffold1260 TRF Tandem_Repeat 52180 52239 65 + . . scaffold1260 WUBlastX DNA_Harbinger 87947 88189 75 + . . scaffold1260 WUBlastX DNA_Harbinger 87995 88210 81 + . . scaffold1260 WUBlastX DNA_Harbinger 88330 88425 25 + . . scaffold1260 WUBlastX DNA_Harbinger 90181 90903 353 - . . scaffold1260 TRF Tandem_Repeat 92527 92737 240 + . . scaffold1260 TRF Tandem_Repeat 93388 93453 62 + . . scaffold1260 GLEAN promoter 96154 97153 1 + . ID=CGI_10005943; scaffold1260 TRF Tandem_Repeat 96281 96314 68 + . . scaffold1260 GLEAN mRNA 97154 106777 1 + . ID=CGI_10005943; scaffold1260 TRF Tandem_Repeat 101169 101205 74 + . . scaffold1260 GLEAN mRNA 101391 106059 0.529962 - . ID=CGI_10005944; scaffold1260 WUBlastX DNA_Academ 101529 101876 27 - . . scaffold1260 WUBlastX DNA_Academ 101737 102108 77 - . . scaffold1260 WUBlastX DNA_Academ 101818 102102 144 - . . scaffold1260 WUBlastX DNA_Academ 101833 102240 134 - . . scaffold1260 WUBlastX DNA_Academ 102082 102618 91 - . . scaffold1260 WUBlastX DNA_Academ 103026 103310 62 - . . scaffold1260 GLEAN promoter 106060 107059 0.529962 - . ID=CGI_10005944; scaffold1260 GLEAN promoter 106342 107341 1 + . ID=CGI_10005945; scaffold1260 GLEAN mRNA 107342 107966 1 + . ID=CGI_10005945; scaffold1260 GLEAN mRNA 111958 118904 0.993907 - . ID=CGI_10005946; scaffold1260 GLEAN promoter 118905 119904 0.993907 - . ID=CGI_10005946; scaffold1260 WUBlastX DNA_TcMar-Tc2 120279 121370 140 + . . scaffold1260 WUBlastX DNA_TcMar-Tc2 120357 121193 188 + . . scaffold1260 WUBlastX DNA_TcMar-Tc2 120495 121184 194 + . . scaffold1260 GLEAN mRNA 125467 137108 0.839916 - . ID=CGI_10005947; scaffold1260 GLEAN promoter 136728 137727 0.986568 + . ID=CGI_10005948; scaffold1260 GLEAN promoter 137109 138108 0.839916 - . ID=CGI_10005947; scaffold1260 GLEAN mRNA 137728 138834 0.986568 + . ID=CGI_10005948; scaffold1261 GLEAN mRNA 10104 16618 0.999675 - . ID=CGI_10002387; scaffold1261 GLEAN promoter 16619 17618 0.999675 - . ID=CGI_10002387; scaffold1261 WUBlastX LINE_L1 19613 19930 54 - . . scaffold1261 WUBlastX LINE_L1-Tx1 19724 19930 65 - . . scaffold1261 WUBlastX LINE_L1 19760 19942 92 - . . scaffold1261 WUBlastX LINE_L1-Tx1 19942 21030 620 - . . scaffold1261 WUBlastX LINE_L1-Tx1 19957 21465 399 - . . scaffold1261 WUBlastX LINE_L1-Tx1 21319 21612 26 - . . scaffold1261 WUBlastX LINE_L1 21334 21531 75 - . . scaffold1261 WUBlastX LINE_L1 21430 21564 46 - . . scaffold1261 WUBlastX LINE_L1-Tx1 21790 22218 42 - . . scaffold1261 WUBlastX LINE_L1-Tx1 21862 22257 85 - . . scaffold1261 WUBlastX LINE_L1-Tx1 22600 24627 414 - . . scaffold1261 WUBlastX LINE_L1-Tx1 23386 24591 460 - . . scaffold1261 WUBlastX LINE_L1 24624 24926 78 - . . scaffold1261 TRF Tandem_Repeat 25613 25718 81 + . . scaffold1261 TRF Tandem_Repeat 25614 25664 59 + . . scaffold1261 TRF Tandem_Repeat 37924 37985 74 + . . scaffold1261 TRF Tandem_Repeat 37924 37981 73 + . . scaffold1261 TRF Tandem_Repeat 37927 37980 56 + . . scaffold1261 TRF Tandem_Repeat 39974 40114 129 + . . scaffold1261 TRF Tandem_Repeat 41031 41122 105 + . . scaffold1262 GLEAN mRNA 750 1361 0.776794 - . ID=CGI_10018927; scaffold1262 GLEAN promoter 1362 2361 0.776794 - . ID=CGI_10018927; scaffold1262 TRF Tandem_Repeat 7798 7834 74 + . . scaffold1262 TRF Tandem_Repeat 9107 9147 82 + . . scaffold1262 TRF Tandem_Repeat 9913 9959 94 + . . scaffold1262 TRF Tandem_Repeat 15244 17500 2434 + . . scaffold1262 TRF Tandem_Repeat 28439 28473 70 + . . scaffold1262 TRF Tandem_Repeat 60308 60379 144 + . . scaffold1262 GLEAN mRNA 67104 77376 1 - . ID=CGI_10018928; scaffold1262 TRF Tandem_Repeat 68407 68455 71 + . . scaffold1262 TRF Tandem_Repeat 68887 68936 66 + . . scaffold1262 WUBlastX DNA_Sola 69957 70133 112 + . . scaffold1262 TRF Tandem_Repeat 72242 72283 84 + . . scaffold1262 GLEAN promoter 73759 74758 0.992486 + . ID=CGI_10018929; scaffold1262 GLEAN mRNA 74759 83144 0.992486 + . ID=CGI_10018929; scaffold1262 GLEAN promoter 77377 78376 1 - . ID=CGI_10018928; scaffold1262 GLEAN mRNA 86410 92685 0.999391 - . ID=CGI_10018930; scaffold1262 GLEAN promoter 92262 93261 0.758315 + . ID=CGI_10018931; scaffold1262 GLEAN promoter 92686 93685 0.999391 - . ID=CGI_10018930; scaffold1262 GLEAN mRNA 93262 109707 0.758315 + . ID=CGI_10018931; scaffold1262 WUBlastX LINE_L2 112427 112885 26 + . . scaffold1262 WUBlastX LINE_L2 112562 112885 61 + . . scaffold1262 WUBlastX LINE_CR1 112619 112885 178 + . . scaffold1262 WUBlastX LINE_CR1 112893 113147 36 + . . scaffold1262 WUBlastX LINE_CR1 112893 113108 107 + . . scaffold1262 GLEAN promoter 116438 117437 0.493445 + . ID=CGI_10018932; scaffold1262 GLEAN mRNA 117438 121559 0.493445 + . ID=CGI_10018932; scaffold1262 TRF Tandem_Repeat 122467 123131 1043 + . . scaffold1262 WUBlastX LINE_RTE-X 124508 124924 80 + . . scaffold1262 WUBlastX LINE_RTE-X 124625 125059 71 + . . scaffold1262 GLEAN mRNA 128637 152422 0.881343 - . ID=CGI_10018933; scaffold1262 GLEAN promoter 142801 143800 0.999987 + . ID=CGI_10018934; scaffold1262 GLEAN mRNA 143801 151621 0.999987 + . ID=CGI_10018934; scaffold1262 TRF Tandem_Repeat 147643 148801 1133 + . . scaffold1262 GLEAN promoter 152423 153422 0.881343 - . ID=CGI_10018933; scaffold1262 GLEAN mRNA 159424 163912 1 - . ID=CGI_10018935; scaffold1262 GLEAN promoter 163063 164062 0.634562 + . ID=CGI_10018936; scaffold1262 GLEAN promoter 163913 164912 1 - . ID=CGI_10018935; scaffold1262 GLEAN mRNA 164063 170938 0.634562 + . ID=CGI_10018936; scaffold1262 GLEAN promoter 173499 174498 0.999676 + . ID=CGI_10018937; scaffold1262 GLEAN mRNA 174499 175809 0.999676 + . ID=CGI_10018937; scaffold1262 TRF Tandem_Repeat 176794 176887 143 + . . scaffold1262 TRF Tandem_Repeat 177514 177555 84 + . . scaffold1262 TRF Tandem_Repeat 180515 180643 114 + . . scaffold1262 GLEAN promoter 188921 189920 0.925982 + . ID=CGI_10018938; scaffold1262 GLEAN mRNA 189921 195613 0.925982 + . ID=CGI_10018938; scaffold1262 GLEAN mRNA 201968 204633 0.473393 - . ID=CGI_10018939; scaffold1262 GLEAN promoter 204634 205633 0.473393 - . ID=CGI_10018939; scaffold1262 GLEAN mRNA 225730 234863 0.990229 - . ID=CGI_10018940; scaffold1262 GLEAN promoter 234258 235257 0.999676 + . ID=CGI_10018941; scaffold1262 GLEAN promoter 234864 235863 0.990229 - . ID=CGI_10018940; scaffold1262 GLEAN mRNA 235258 243112 0.999676 + . ID=CGI_10018941; scaffold1262 TRF Tandem_Repeat 241341 241365 50 + . . scaffold1262 GLEAN mRNA 245942 275737 0.888426 - . ID=CGI_10018942; scaffold1262 TRF Tandem_Repeat 262621 262691 142 + . . scaffold1262 TRF Tandem_Repeat 263215 263245 62 + . . scaffold1262 TRF Tandem_Repeat 274029 274076 60 + . . scaffold1262 GLEAN promoter 275738 276737 0.888426 - . ID=CGI_10018942; scaffold1262 TRF Tandem_Repeat 280956 280990 61 + . . scaffold1262 TRF Tandem_Repeat 288384 288441 116 + . . scaffold1262 TRF Tandem_Repeat 293675 293700 52 + . . scaffold1262 GLEAN mRNA 299052 319830 0.786182 - . ID=CGI_10018943; scaffold1262 TRF Tandem_Repeat 302610 302639 51 + . . scaffold1262 TRF Tandem_Repeat 303222 303265 88 + . . scaffold1262 TRF Tandem_Repeat 307221 307280 104 + . . scaffold1262 GLEAN promoter 319831 320830 0.786182 - . ID=CGI_10018943; scaffold1262 TRF Tandem_Repeat 321176 321223 51 + . . scaffold1262 WUBlastX LINE_L1-Tx1 327279 328280 198 - . . scaffold1262 WUBlastX LINE_L1 330773 331093 55 - . . scaffold1262 WUBlastX LINE_L1-Tx1 330824 331132 98 - . . scaffold1262 WUBlastX LINE_L1 331155 332177 419 - . . scaffold1262 GLEAN mRNA 340672 343006 0.999807 - . ID=CGI_10018944; scaffold1262 GLEAN promoter 343007 344006 0.999807 - . ID=CGI_10018944; scaffold1262 WUBlastX LINE_RTE-X 343685 344854 257 - . . scaffold1262 WUBlastX LINE_RTE-X 343862 344854 302 - . . scaffold1262 GLEAN mRNA 354471 371770 0.990769 - . ID=CGI_10018945; scaffold1262 TRF Tandem_Repeat 360733 360781 98 + . . scaffold1262 GLEAN promoter 363669 364668 0.777165 + . ID=CGI_10018946; scaffold1262 GLEAN mRNA 364669 375432 0.777165 + . ID=CGI_10018946; scaffold1262 TRF Tandem_Repeat 366838 366870 66 + . . scaffold1262 GLEAN promoter 371771 372770 0.990769 - . ID=CGI_10018945; scaffold1262 GLEAN mRNA 371816 387218 0.801532 - . ID=CGI_10018947; scaffold1262 WUBlastX LTR_Gypsy 378165 378323 75 + . . scaffold1262 TRF Tandem_Repeat 382780 382995 360 + . . scaffold1262 GLEAN promoter 386467 387466 1 + . ID=CGI_10018948; scaffold1262 GLEAN promoter 387219 388218 0.801532 - . ID=CGI_10018947; scaffold1262 GLEAN mRNA 387467 395891 1 + . ID=CGI_10018948; scaffold1262 TRF Tandem_Repeat 392073 392368 385 + . . scaffold1262 TRF Tandem_Repeat 392073 392368 538 + . . scaffold1262 GLEAN mRNA 396345 397826 0.999942 - . ID=CGI_10018949; scaffold1262 GLEAN promoter 397827 398826 0.999942 - . ID=CGI_10018949; scaffold1262 GLEAN mRNA 398955 408690 0.917228 - . ID=CGI_10018950; scaffold1262 TRF Tandem_Repeat 407827 407921 63 + . . scaffold1262 TRF Tandem_Repeat 407828 407921 82 + . . scaffold1262 TRF Tandem_Repeat 407870 407909 59 + . . scaffold1262 GLEAN promoter 408691 409690 0.917228 - . ID=CGI_10018950; scaffold1262 GLEAN mRNA 413099 423130 0.999676 - . ID=CGI_10018951; scaffold1262 GLEAN promoter 418483 419482 0.803191 + . ID=CGI_10018952; scaffold1262 GLEAN mRNA 419483 428715 0.803191 + . ID=CGI_10018952; scaffold1262 GLEAN promoter 423131 424130 0.999676 - . ID=CGI_10018951; scaffold1262 TRF Tandem_Repeat 426512 426577 77 + . . scaffold1262 TRF Tandem_Repeat 426512 426597 61 + . . scaffold1262 TRF Tandem_Repeat 429080 429397 120 + . . scaffold1262 TRF Tandem_Repeat 429492 429652 87 + . . scaffold1262 TRF Tandem_Repeat 433582 433675 188 + . . scaffold1262 GLEAN mRNA 437499 439115 0.999234 - . ID=CGI_10018953; scaffold1262 GLEAN promoter 439116 440115 0.999234 - . ID=CGI_10018953; scaffold1262 TRF Tandem_Repeat 451540 451578 78 + . . scaffold1262 TRF Tandem_Repeat 458798 458830 66 + . . scaffold1262 GLEAN promoter 466377 467376 0.994341 + . ID=CGI_10018954; scaffold1262 GLEAN mRNA 467377 481186 0.994341 + . ID=CGI_10018954; scaffold1262 TRF Tandem_Repeat 468937 468986 100 + . . scaffold1262 GLEAN mRNA 494450 501014 0.990667 - . ID=CGI_10018955; scaffold1262 GLEAN promoter 501015 502014 0.990667 - . ID=CGI_10018955; scaffold1262 GLEAN mRNA 503446 523698 0.999351 - . ID=CGI_10018956; scaffold1262 WUBlastX DNA_IS4EU 511314 511739 52 + . . scaffold1262 WUBlastX DNA_Kolobok-IS4 511476 511676 64 + . . scaffold1262 WUBlastX DNA_IS4EU 511675 511815 29 + . . scaffold1262 WUBlastX DNA_IS4EU 512042 512293 45 + . . scaffold1262 WUBlastX DNA_Kolobok-IS4 512090 513232 275 + . . scaffold1262 WUBlastX DNA_IS4EU 513637 514635 541 - . . scaffold1262 WUBlastX DNA_Kolobok-IS4 515085 515174 39 - . . scaffold1262 TRF Tandem_Repeat 515211 515281 124 + . . scaffold1262 TRF Tandem_Repeat 515396 515430 70 + . . scaffold1262 TRF Tandem_Repeat 515544 515578 70 + . . scaffold1262 TRF Tandem_Repeat 515692 515726 70 + . . scaffold1262 WUBlastX DNA_Kolobok-IS4 515844 515981 40 - . . scaffold1262 GLEAN promoter 523604 524603 0.997233 + . ID=CGI_10018957; scaffold1262 GLEAN promoter 523699 524698 0.999351 - . ID=CGI_10018956; scaffold1262 GLEAN mRNA 524604 531466 0.997233 + . ID=CGI_10018957; scaffold1262 GLEAN mRNA 533839 536369 0.647552 - . ID=CGI_10018958; scaffold1262 TRF Tandem_Repeat 534285 534310 52 + . . scaffold1262 GLEAN promoter 535759 536758 1 + . ID=CGI_10018959; scaffold1262 GLEAN promoter 536370 537369 0.647552 - . ID=CGI_10018958; scaffold1262 GLEAN mRNA 536759 542214 1 + . ID=CGI_10018959; scaffold1262 WUBlastX LTR_Gypsy 538928 539110 50 + . . scaffold1262 TRF Tandem_Repeat 539198 539263 89 + . . scaffold1262 WUBlastX LTR_Gypsy 543263 543577 31 + . . scaffold1262 WUBlastX LTR_Gypsy-Cigr 543359 543565 75 + . . scaffold1262 WUBlastX LTR_Gypsy 543425 543565 84 + . . scaffold1262 WUBlastX LTR_Gypsy 543458 543613 83 + . . scaffold1262 WUBlastX LTR_Gypsy 543458 543661 22 + . . scaffold1262 WUBlastX LTR_Gypsy 543467 543565 92 + . . scaffold1262 WUBlastX LTR_Gypsy 543571 543624 24 + . . scaffold1262 WUBlastX LTR_Gypsy 544003 544272 87 + . . scaffold1262 WUBlastX LTR_Gypsy-Cigr 544263 544541 172 + . . scaffold1262 WUBlastX LTR_Gypsy 544573 544788 100 + . . scaffold1262 WUBlastX LTR_Gypsy 544697 545002 125 + . . scaffold1262 WUBlastX LTR_Gypsy 544769 544987 158 + . . scaffold1262 WUBlastX LTR_Gypsy 544772 545047 101 + . . scaffold1262 GLEAN promoter 557615 558614 0.395768 + . ID=CGI_10018960; scaffold1262 GLEAN mRNA 558615 563088 0.395768 + . ID=CGI_10018960; scaffold1262 TRF Tandem_Repeat 566353 566401 98 + . . scaffold1262 TRF Tandem_Repeat 572779 572829 77 + . . scaffold1262 TRF Tandem_Repeat 574377 574431 110 + . . scaffold1262 TRF Tandem_Repeat 574557 574750 300 + . . scaffold1262 TRF Tandem_Repeat 574563 574750 314 + . . scaffold1263 GLEAN promoter 1896 2895 0.999949 + . ID=CGI_10000700; scaffold1263 GLEAN mRNA 2896 7417 0.999949 + . ID=CGI_10000700; scaffold1264 GLEAN promoter 1 443 0.998938 + . ID=CGI_10007169; scaffold1264 GLEAN mRNA 444 20424 0.998938 + . ID=CGI_10007169; scaffold1264 GLEAN promoter 24666 25665 0.612594 + . ID=CGI_10007170; scaffold1264 GLEAN mRNA 25666 41185 0.612594 + . ID=CGI_10007170; scaffold1264 WUBlastX LINE_L1-Tx1 37129 37626 42 + . . scaffold1264 WUBlastX LINE_L1 37249 37773 38 + . . scaffold1264 GLEAN promoter 41236 42235 0.959625 + . ID=CGI_10007171; scaffold1264 GLEAN mRNA 42236 82741 0.959625 + . ID=CGI_10007171; scaffold1264 TRF Tandem_Repeat 53155 53194 53 + . . scaffold1264 GLEAN mRNA 82143 96465 0.354771 - . ID=CGI_10007172; scaffold1264 TRF Tandem_Repeat 84433 84481 98 + . . scaffold1264 TRF Tandem_Repeat 91754 91806 106 + . . scaffold1264 GLEAN promoter 93187 94186 0.592998 + . ID=CGI_10007173; scaffold1264 GLEAN mRNA 94187 114043 0.592998 + . ID=CGI_10007173; scaffold1264 GLEAN promoter 96466 97465 0.354771 - . ID=CGI_10007172; scaffold1264 GLEAN mRNA 109018 119202 0.702372 - . ID=CGI_10007174; scaffold1264 TRF Tandem_Repeat 110069 110129 50 + . . scaffold1264 TRF Tandem_Repeat 110201 110264 58 + . . scaffold1264 TRF Tandem_Repeat 110201 110287 77 + . . scaffold1264 TRF Tandem_Repeat 111838 111872 70 + . . scaffold1264 TRF Tandem_Repeat 112060 112132 137 + . . scaffold1264 TRF Tandem_Repeat 112858 112946 81 + . . scaffold1264 TRF Tandem_Repeat 113019 113079 50 + . . scaffold1264 GLEAN promoter 119203 120202 0.702372 - . ID=CGI_10007174; scaffold1264 GLEAN mRNA 123074 127803 0.999676 - . ID=CGI_10007175; scaffold1264 GLEAN promoter 127804 128803 0.999676 - . ID=CGI_10007175; scaffold1264 TRF Tandem_Repeat 128990 129021 55 + . . scaffold1264 GLEAN mRNA 129263 151960 0.5 - . ID=CGI_10007176; scaffold1264 WUBlastX LINE_L1 135433 136242 326 + . . scaffold1264 WUBlastX LINE_L1 136179 137522 839 + . . scaffold1264 WUBlastX LINE_L1-Tx1 137531 139060 328 + . . scaffold1264 TRF Tandem_Repeat 140064 140116 97 + . . scaffold1264 GLEAN promoter 144247 145246 1 + . ID=CGI_10007177; scaffold1264 GLEAN mRNA 145247 160080 1 + . ID=CGI_10007177; scaffold1264 TRF Tandem_Repeat 147879 147939 122 + . . scaffold1264 TRF Tandem_Repeat 149477 149534 107 + . . scaffold1264 GLEAN promoter 151961 152960 0.5 - . ID=CGI_10007176; scaffold1264 TRF Tandem_Repeat 171230 171267 76 + . . scaffold1266 TRF Tandem_Repeat 8704 8883 65 + . . scaffold1266 TRF Tandem_Repeat 8729 8879 94 + . . scaffold1266 TRF Tandem_Repeat 11563 11679 58 + . . scaffold1266 TRF Tandem_Repeat 11595 11741 73 + . . scaffold1266 GLEAN promoter 13736 14735 0.999675 + . ID=CGI_10004341; scaffold1266 GLEAN mRNA 14736 16646 0.999675 + . ID=CGI_10004341; scaffold1266 TRF Tandem_Repeat 19223 19260 76 + . . scaffold1266 GLEAN promoter 20252 21251 0.734216 + . ID=CGI_10004343; scaffold1266 GLEAN mRNA 20426 20737 0.999855 - . ID=CGI_10004342; scaffold1266 GLEAN promoter 20738 21737 0.999855 - . ID=CGI_10004342; scaffold1266 GLEAN mRNA 21252 22445 0.734216 + . ID=CGI_10004343; scaffold1266 GLEAN mRNA 23079 33478 1 - . ID=CGI_10004344; scaffold1266 TRF Tandem_Repeat 31428 31463 72 + . . scaffold1266 GLEAN promoter 33479 34478 1 - . ID=CGI_10004344; scaffold1266 TRF Tandem_Repeat 34004 34041 76 + . . scaffold1266 TRF Tandem_Repeat 41148 41189 84 + . . scaffold1266 GLEAN promoter 46526 47525 0.593375 + . ID=CGI_10004345; scaffold1266 GLEAN mRNA 47526 48680 0.593375 + . ID=CGI_10004345; scaffold1266 WUBlastX LTR_Ngaro 58610 59422 427 - . . scaffold1266 WUBlastX LTR_Ngaro 59528 59854 192 - . . scaffold1266 WUBlastX LTR_Ngaro 59905 60351 306 - . . scaffold1266 WUBlastX LTR_Ngaro 60354 61019 478 - . . scaffold1266 WUBlastX LTR_Ngaro 61033 61212 109 - . . scaffold1266 WUBlastX LTR_Ngaro 61033 61245 37 - . . scaffold1266 WUBlastX LTR_Ngaro 61359 61664 45 - . . scaffold1266 WUBlastX LTR_Ngaro 61521 61688 70 - . . scaffold1266 WUBlastX LTR_Ngaro 61700 61786 24 - . . scaffold1266 TRF Tandem_Repeat 63587 63684 90 + . . scaffold1266 TRF Tandem_Repeat 66590 66655 114 + . . scaffold1266 GLEAN promoter 87466 88465 0.684734 + . ID=CGI_10004346; scaffold1266 GLEAN mRNA 88466 95770 0.684734 + . ID=CGI_10004346; scaffold1267 GLEAN promoter 17263 18262 0.541062 + . ID=CGI_10025137; scaffold1267 GLEAN mRNA 18263 37440 0.541062 + . ID=CGI_10025137; scaffold1267 TRF Tandem_Repeat 29647 31034 1493 + . . scaffold1267 TRF Tandem_Repeat 45177 45389 365 + . . scaffold1267 GLEAN mRNA 46111 58131 0.991325 - . ID=CGI_10025138; scaffold1267 TRF Tandem_Repeat 51589 51657 75 + . . scaffold1267 TRF Tandem_Repeat 51589 51658 54 + . . scaffold1267 GLEAN promoter 58132 59131 0.991325 - . ID=CGI_10025138; scaffold1267 TRF Tandem_Repeat 60524 60584 122 + . . scaffold1267 TRF Tandem_Repeat 61894 61942 62 + . . scaffold1267 TRF Tandem_Repeat 63905 64038 112 + . . scaffold1267 TRF Tandem_Repeat 63909 64014 194 + . . scaffold1267 TRF Tandem_Repeat 66165 66490 455 + . . scaffold1267 TRF Tandem_Repeat 66165 66488 396 + . . scaffold1267 TRF Tandem_Repeat 66779 66835 96 + . . scaffold1267 TRF Tandem_Repeat 69368 69410 86 + . . scaffold1267 TRF Tandem_Repeat 70560 70599 80 + . . scaffold1267 TRF Tandem_Repeat 72233 72279 94 + . . scaffold1267 GLEAN promoter 74363 75362 0.99991 + . ID=CGI_10025139; scaffold1267 GLEAN mRNA 75363 86502 0.99991 + . ID=CGI_10025139; scaffold1267 TRF Tandem_Repeat 79721 79787 134 + . . scaffold1267 TRF Tandem_Repeat 81005 81166 188 + . . scaffold1267 TRF Tandem_Repeat 87167 87262 192 + . . scaffold1267 TRF Tandem_Repeat 90087 90221 92 + . . scaffold1267 TRF Tandem_Repeat 90163 90221 81 + . . scaffold1267 GLEAN mRNA 91448 94503 0.999855 - . ID=CGI_10025140; scaffold1267 GLEAN promoter 94504 95503 0.999855 - . ID=CGI_10025140; scaffold1267 GLEAN promoter 108090 109089 1 + . ID=CGI_10025141; scaffold1267 TRF Tandem_Repeat 108196 108250 74 + . . scaffold1267 GLEAN mRNA 109090 111181 1 + . ID=CGI_10025141; scaffold1267 TRF Tandem_Repeat 109436 109462 54 + . . scaffold1267 GLEAN mRNA 111924 115294 1 - . ID=CGI_10025142; scaffold1267 GLEAN promoter 115295 116294 1 - . ID=CGI_10025142; scaffold1267 TRF Tandem_Repeat 119519 119544 52 + . . scaffold1267 TRF Tandem_Repeat 119584 119648 130 + . . scaffold1267 GLEAN mRNA 126092 131654 0.702385 - . ID=CGI_10025143; scaffold1267 GLEAN promoter 131655 132654 0.702385 - . ID=CGI_10025143; scaffold1267 TRF Tandem_Repeat 131909 131970 72 + . . scaffold1267 TRF Tandem_Repeat 132010 132050 82 + . . scaffold1267 GLEAN promoter 162654 163653 1 + . ID=CGI_10025144; scaffold1267 GLEAN mRNA 163654 171208 1 + . ID=CGI_10025144; scaffold1267 TRF Tandem_Repeat 165335 165384 100 + . . scaffold1267 GLEAN promoter 181632 182631 1 + . ID=CGI_10025145; scaffold1267 GLEAN mRNA 182632 189175 1 + . ID=CGI_10025145; scaffold1267 TRF Tandem_Repeat 192628 192741 99 + . . scaffold1267 TRF Tandem_Repeat 196792 196905 79 + . . scaffold1267 TRF Tandem_Repeat 211348 211374 54 + . . scaffold1267 GLEAN promoter 211503 212502 1 + . ID=CGI_10025146; scaffold1267 GLEAN mRNA 212503 215822 1 + . ID=CGI_10025146; scaffold1267 TRF Tandem_Repeat 219535 219646 104 + . . scaffold1267 TRF Tandem_Repeat 250903 251014 104 + . . scaffold1267 GLEAN promoter 255119 256118 0.999984 + . ID=CGI_10025147; scaffold1267 GLEAN mRNA 256119 256886 0.999984 + . ID=CGI_10025147; scaffold1267 WUBlastX DNA_TcMar-Tc1 258029 258181 63 - . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258168 258275 52 - . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258204 258260 56 - . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258259 258345 32 - . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258265 258327 35 - . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258265 258363 26 - . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258800 258958 24 - . . scaffold1267 WUBlastX DNA_TcMar-Tc1 258836 258958 58 - . . scaffold1267 WUBlastX DNA_TcMar-Tc1 259247 259423 25 - . . scaffold1267 WUBlastX DNA_TcMar-Marin 260045 260371 73 + . . scaffold1267 WUBlastX DNA_TcMar-Marin 260078 260332 99 + . . scaffold1267 WUBlastX DNA_TcMar-Marin 261026 261118 26 + . . scaffold1267 WUBlastX DNA_TcMar-Marin 261082 261369 184 + . . scaffold1267 WUBlastX DNA_TcMar-Marin 261566 261970 225 + . . scaffold1267 TRF Tandem_Repeat 263704 263745 75 + . . scaffold1267 TRF Tandem_Repeat 264009 264060 61 + . . scaffold1267 WUBlastX DNA_MuDR 270438 271568 229 - . . scaffold1267 WUBlastX DNA_MuDR 271519 272373 235 - . . scaffold1267 WUBlastX DNA_MuDR 271831 272703 258 - . . scaffold1267 WUBlastX DNA_MuDR 272837 272893 21 - . . scaffold1267 TRF Tandem_Repeat 272950 273492 980 + . . scaffold1267 TRF Tandem_Repeat 279820 279926 115 + . . scaffold1267 TRF Tandem_Repeat 281652 281742 137 + . . scaffold1267 TRF Tandem_Repeat 286533 286647 106 + . . scaffold1267 TRF Tandem_Repeat 296000 296181 152 + . . scaffold1267 TRF Tandem_Repeat 296545 296630 109 + . . scaffold1267 TRF Tandem_Repeat 299612 299673 115 + . . scaffold1267 TRF Tandem_Repeat 300009 300059 93 + . . scaffold1267 GLEAN promoter 305072 306071 0.448271 + . ID=CGI_10025148; scaffold1267 GLEAN mRNA 306072 306518 0.448271 + . ID=CGI_10025148; scaffold1267 TRF Tandem_Repeat 317774 317833 57 + . . scaffold1267 TRF Tandem_Repeat 317783 317833 66 + . . scaffold1267 TRF Tandem_Repeat 317787 317834 51 + . . scaffold1267 GLEAN promoter 335358 336357 0.59015 + . ID=CGI_10025149; scaffold1267 WUBlastX LINE_L2 335569 335913 33 + . . scaffold1267 GLEAN mRNA 336358 336936 0.59015 + . ID=CGI_10025149; scaffold1267 GLEAN mRNA 343067 345620 0.810498 - . ID=CGI_10025150; scaffold1267 GLEAN promoter 345621 346620 0.810498 - . ID=CGI_10025150; scaffold1267 WUBlastX LTR_Pao 345622 346884 99 + . . scaffold1267 WUBlastX LTR_Pao 345868 346899 223 + . . scaffold1267 WUBlastX LTR_Pao 346342 346899 344 + . . scaffold1267 WUBlastX LTR_Pao 346925 348592 440 + . . scaffold1267 WUBlastX LTR_Pao 348592 350460 1326 + . . scaffold1267 WUBlastX LTR_Pao 350270 350500 78 + . . scaffold1267 WUBlastX LTR_Pao 350508 351734 1010 + . . scaffold1267 WUBlastX DNA_PiggyBac 357592 358227 196 + . . scaffold1267 WUBlastX DNA_PiggyBac 357736 358227 229 + . . scaffold1267 WUBlastX LTR_Pao 358397 360103 1368 + . . scaffold1267 WUBlastX LTR_Pao 359342 360340 355 + . . scaffold1267 WUBlastX LTR_Pao 360271 360708 320 + . . scaffold1267 WUBlastX LTR_Pao 360711 361394 592 + . . scaffold1267 WUBlastX LTR_Gypsy 369723 369824 33 - . . scaffold1267 WUBlastX LTR_Gypsy 369764 369931 59 - . . scaffold1267 WUBlastX LTR_Gypsy 369773 369991 40 - . . scaffold1267 WUBlastX LTR_Gypsy 369773 369907 68 - . . scaffold1267 WUBlastX LTR_Gypsy 369773 370522 23 - . . scaffold1267 WUBlastX LTR_Gypsy 370002 370091 28 - . . scaffold1267 WUBlastX LTR_Gypsy 370226 370495 92 - . . scaffold1267 WUBlastX LTR_Gypsy 370268 371380 378 - . . scaffold1267 WUBlastX LTR_Gypsy 371012 371521 138 - . . scaffold1267 WUBlastX LTR_Gypsy 371826 371993 23 - . . scaffold1267 GLEAN mRNA 373736 378279 0.532395 - . ID=CGI_10025151; scaffold1267 GLEAN promoter 378280 379279 0.532395 - . ID=CGI_10025151; scaffold1267 TRF Tandem_Repeat 381172 381234 126 + . . scaffold1267 GLEAN mRNA 383501 383848 0.950853 - . ID=CGI_10025152; scaffold1267 GLEAN promoter 383849 384848 0.950853 - . ID=CGI_10025152; scaffold1267 WUBlastX DNA_IS4EU 391072 391191 29 + . . scaffold1267 WUBlastX DNA_IS4EU 391530 391652 48 + . . scaffold1267 WUBlastX DNA_IS4EU 391812 391982 76 + . . scaffold1267 WUBlastX LINE_L1 406261 406500 38 + . . scaffold1267 WUBlastX LINE_L1-Tx1 406273 406452 43 + . . scaffold1267 GLEAN promoter 409677 410676 0.995186 + . ID=CGI_10025153; scaffold1267 GLEAN mRNA 410677 423169 0.995186 + . ID=CGI_10025153; scaffold1267 TRF Tandem_Repeat 414602 414639 76 + . . scaffold1267 TRF Tandem_Repeat 438793 438872 81 + . . scaffold1267 TRF Tandem_Repeat 447954 448029 53 + . . scaffold1267 WUBlastX LTR_Ngaro 449799 450680 177 - . . scaffold1267 WUBlastX LTR_Ngaro 450674 450820 49 - . . scaffold1267 WUBlastX LTR_Ngaro 450820 451128 100 - . . scaffold1267 WUBlastX LTR_Ngaro 451116 451274 47 - . . scaffold1267 WUBlastX LTR_Ngaro 451289 451393 45 - . . scaffold1267 TRF Tandem_Repeat 451682 451732 77 + . . scaffold1267 TRF Tandem_Repeat 452116 452161 83 + . . scaffold1267 TRF Tandem_Repeat 453622 453673 86 + . . scaffold1267 WUBlastX LTR_Ngaro 454130 454921 323 - . . scaffold1267 WUBlastX LTR_Ngaro 455241 455393 80 - . . scaffold1267 TRF Tandem_Repeat 470878 470930 106 + . . scaffold1267 TRF Tandem_Repeat 482231 482265 70 + . . scaffold1267 TRF Tandem_Repeat 508695 508840 114 + . . scaffold1267 GLEAN mRNA 512059 524087 0.99935 - . ID=CGI_10025154; scaffold1267 TRF Tandem_Repeat 522149 522174 52 + . . scaffold1267 GLEAN promoter 522321 523320 0.648527 + . ID=CGI_10025155; scaffold1267 TRF Tandem_Repeat 522402 522493 123 + . . scaffold1267 GLEAN mRNA 523321 527031 0.648527 + . ID=CGI_10025155; scaffold1267 GLEAN promoter 524088 525087 0.99935 - . ID=CGI_10025154; scaffold1267 GLEAN mRNA 529741 546486 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 530700 530813 74 + . . scaffold1267 TRF Tandem_Repeat 530720 530834 76 + . . scaffold1267 TRF Tandem_Repeat 532361 532633 357 + . . scaffold1267 TRF Tandem_Repeat 538542 538618 58 + . . scaffold1267 TRF Tandem_Repeat 538614 538663 54 + . . scaffold1267 TRF Tandem_Repeat 538685 538856 66 + . . scaffold1267 TRF Tandem_Repeat 538802 538936 70 + . . scaffold1267 TRF Tandem_Repeat 538806 538933 183 + . . scaffold1267 TRF Tandem_Repeat 538838 538935 81 + . . scaffold1267 TRF Tandem_Repeat 543181 543490 575 + . . scaffold1267 TRF Tandem_Repeat 544725 545403 1061 + . . scaffold1267 TRF Tandem_Repeat 545680 545867 367 + . . scaffold1267 TRF Tandem_Repeat 545685 545859 53 + . . scaffold1267 GLEAN promoter 546440 547439 0.724543 + . ID=CGI_10025157; scaffold1267 GLEAN promoter 546487 547486 0.814164 - . ID=CGI_10025156; scaffold1267 TRF Tandem_Repeat 546589 546649 122 + . . scaffold1267 TRF Tandem_Repeat 546647 546688 84 + . . scaffold1267 GLEAN mRNA 547440 561333 0.724543 + . ID=CGI_10025157; scaffold1267 TRF Tandem_Repeat 548461 548510 100 + . . scaffold1267 TRF Tandem_Repeat 552032 553387 2118 + . . scaffold1267 TRF Tandem_Repeat 552032 553387 2117 + . . scaffold1267 TRF Tandem_Repeat 552032 553387 1796 + . . scaffold1267 TRF Tandem_Repeat 552732 553377 880 + . . scaffold1267 TRF Tandem_Repeat 559376 559614 205 + . . scaffold1267 TRF Tandem_Repeat 559378 559613 141 + . . scaffold1267 TRF Tandem_Repeat 559726 559863 154 + . . scaffold1267 TRF Tandem_Repeat 559779 559884 129 + . . scaffold1267 TRF Tandem_Repeat 560175 560741 819 + . . scaffold1267 GLEAN promoter 562372 563371 1 + . ID=CGI_10025158; scaffold1267 GLEAN mRNA 563372 567439 1 + . ID=CGI_10025158; scaffold1267 WUBlastX LINE_L1 568652 568912 26 + . . scaffold1267 WUBlastX LINE_L1-Tx1 568735 569091 67 + . . scaffold1267 WUBlastX LINE_L1-Tx1 568790 568921 82 + . . scaffold1267 WUBlastX LINE_L1 568909 569091 82 + . . scaffold1267 WUBlastX LINE_L1-Tx1 569094 569489 204 + . . scaffold1267 WUBlastX LINE_L1 569094 569579 141 + . . scaffold1267 TRF Tandem_Repeat 583045 583111 80 + . . scaffold1267 TRF Tandem_Repeat 583554 583684 244 + . . scaffold1267 WUBlastX LTR_DIRS 584602 585588 60 - . . scaffold1267 TRF Tandem_Repeat 587150 587729 968 + . . scaffold1267 TRF Tandem_Repeat 587990 588072 60 + . . scaffold1267 TRF Tandem_Repeat 588334 589412 1865 + . . scaffold1267 TRF Tandem_Repeat 589623 590846 150 + . . scaffold1267 TRF Tandem_Repeat 589842 590857 1775 + . . scaffold1267 WUBlastX LINE_RTE-X 592531 592608 37 + . . scaffold1267 WUBlastX LINE_RTE-X 592850 593017 33 + . . scaffold1267 GLEAN mRNA 593436 593825 0.618072 - . ID=CGI_10025159; scaffold1267 GLEAN promoter 593768 594767 0.980173 + . ID=CGI_10025160; scaffold1267 GLEAN promoter 593826 594825 0.618072 - . ID=CGI_10025159; scaffold1267 GLEAN mRNA 594768 601920 0.980173 + . ID=CGI_10025160; scaffold1267 TRF Tandem_Repeat 594887 595034 82 + . . scaffold1267 TRF Tandem_Repeat 595172 595292 95 + . . scaffold1267 TRF Tandem_Repeat 595234 595582 511 + . . scaffold1267 TRF Tandem_Repeat 595367 595584 99 + . . scaffold1267 TRF Tandem_Repeat 596391 596964 755 + . . scaffold1267 TRF Tandem_Repeat 596430 596964 878 + . . scaffold1267 TRF Tandem_Repeat 596802 596936 74 + . . scaffold1267 TRF Tandem_Repeat 599849 599921 146 + . . scaffold1267 GLEAN promoter 602748 603747 1 + . ID=CGI_10025161; scaffold1267 GLEAN mRNA 603748 605070 1 + . ID=CGI_10025161; scaffold1267 GLEAN promoter 605545 606544 1 + . ID=CGI_10025162; scaffold1267 TRF Tandem_Repeat 606034 606076 86 + . . scaffold1267 GLEAN mRNA 606545 606898 1 + . ID=CGI_10025162; scaffold1267 GLEAN promoter 629149 630148 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 629672 629750 83 + . . scaffold1267 GLEAN mRNA 630149 649593 0.811452 + . ID=CGI_10025163; scaffold1267 TRF Tandem_Repeat 630535 630624 80 + . . scaffold1267 TRF Tandem_Repeat 630538 630623 108 + . . scaffold1267 TRF Tandem_Repeat 630539 630618 114 + . . scaffold1267 TRF Tandem_Repeat 632174 632775 723 + . . scaffold1267 TRF Tandem_Repeat 635598 635629 50 + . . scaffold1267 TRF Tandem_Repeat 636315 636974 947 + . . scaffold1267 TRF Tandem_Repeat 638576 639002 597 + . . scaffold1267 TRF Tandem_Repeat 641851 642029 243 + . . scaffold1267 TRF Tandem_Repeat 645010 645064 62 + . . scaffold1267 TRF Tandem_Repeat 645915 646192 259 + . . scaffold1267 TRF Tandem_Repeat 645979 646232 234 + . . scaffold1267 TRF Tandem_Repeat 646186 646509 212 + . . scaffold1267 TRF Tandem_Repeat 650279 650505 409 + . . scaffold1267 GLEAN promoter 671589 672588 0.96195 + . ID=CGI_10025164; scaffold1267 GLEAN mRNA 672589 677080 0.96195 + . ID=CGI_10025164; scaffold1267 TRF Tandem_Repeat 674299 674366 136 + . . scaffold1267 GLEAN promoter 676415 677414 0.795629 + . ID=CGI_10025165; scaffold1267 GLEAN mRNA 677415 704094 0.795629 + . ID=CGI_10025165; scaffold1267 TRF Tandem_Repeat 691378 691429 104 + . . scaffold1267 TRF Tandem_Repeat 698875 699318 715 + . . scaffold1267 TRF Tandem_Repeat 698875 699318 703 + . . scaffold1267 TRF Tandem_Repeat 701980 702541 822 + . . scaffold1267 TRF Tandem_Repeat 702712 703268 690 + . . scaffold1267 GLEAN mRNA 712393 727027 0.949718 - . ID=CGI_10025166; scaffold1267 TRF Tandem_Repeat 712860 713414 433 + . . scaffold1267 GLEAN promoter 727028 728027 0.949718 - . ID=CGI_10025166; scaffold1267 TRF Tandem_Repeat 728372 728756 367 + . . scaffold1267 TRF Tandem_Repeat 728384 728488 95 + . . scaffold1267 GLEAN mRNA 738355 760622 0.992619 - . ID=CGI_10025169; scaffold1267 TRF Tandem_Repeat 741734 743792 2114 + . . scaffold1267 TRF Tandem_Repeat 743987 744201 188 + . . scaffold1267 TRF Tandem_Repeat 745630 745831 167 + . . scaffold1267 TRF Tandem_Repeat 745925 746913 1591 + . . scaffold1267 TRF Tandem_Repeat 747763 750470 3324 + . . scaffold1267 TRF Tandem_Repeat 747772 750470 4519 + . . scaffold1267 TRF Tandem_Repeat 750307 750560 91 + . . scaffold1267 TRF Tandem_Repeat 756991 757169 109 + . . scaffold1267 GLEAN promoter 760623 761622 0.992619 - . ID=CGI_10025169; scaffold1267 WUBlastX LINE_RTE-X 761462 762280 210 + . . scaffold1267 WUBlastX LINE_RTE-X 761516 762196 250 + . . scaffold1267 WUBlastX LINE_RTE-X 762162 762515 54 + . . scaffold1267 WUBlastX LINE_RTE-X 762168 762389 84 + . . scaffold1267 WUBlastX LINE_RTE-X 763873 764349 75 + . . scaffold1267 WUBlastX LINE_RTE-X 764059 764619 59 + . . scaffold1267 GLEAN promoter 764630 765629 1 + . ID=CGI_10025170; scaffold1267 WUBlastX LINE_RTE-X 764637 764789 28 + . . scaffold1267 WUBlastX LINE_RTE-X 764643 764729 32 + . . scaffold1267 GLEAN mRNA 765630 769072 1 + . ID=CGI_10025170; scaffold1267 TRF Tandem_Repeat 768870 768916 58 + . . scaffold1267 TRF Tandem_Repeat 771778 772414 154 + . . scaffold1267 TRF Tandem_Repeat 771778 772430 677 + . . scaffold1267 TRF Tandem_Repeat 771778 772430 672 + . . scaffold1267 TRF Tandem_Repeat 771795 772430 377 + . . scaffold1267 TRF Tandem_Repeat 771813 772352 173 + . . scaffold1267 GLEAN promoter 772380 773379 0.98901 + . ID=CGI_10025171; scaffold1267 GLEAN mRNA 773380 773688 0.98901 + . ID=CGI_10025171; scaffold1267 TRF Tandem_Repeat 787688 788324 422 + . . scaffold1267 TRF Tandem_Repeat 787688 788322 506 + . . scaffold1267 TRF Tandem_Repeat 787735 788322 470 + . . scaffold1267 GLEAN mRNA 788354 789384 0.967365 - . ID=CGI_10025172; scaffold1267 GLEAN promoter 789385 790384 0.967365 - . ID=CGI_10025172; scaffold1267 TRF Tandem_Repeat 791674 791718 90 + . . scaffold1267 TRF Tandem_Repeat 792102 792130 58 + . . scaffold1267 TRF Tandem_Repeat 809751 809787 65 + . . scaffold1267 TRF Tandem_Repeat 810444 812462 763 + . . scaffold1267 TRF Tandem_Repeat 811051 811996 1534 + . . scaffold1267 TRF Tandem_Repeat 826986 827036 102 + . . scaffold1267 WUBlastX LINE_CR1 831978 832040 27 + . . scaffold1267 WUBlastX LINE_CR1 832440 833126 147 + . . scaffold1267 WUBlastX LINE_CR1 832566 833135 355 + . . scaffold1267 GLEAN promoter 840243 841242 0.642339 + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 840690 840727 60 + . . scaffold1267 GLEAN mRNA 841243 850199 0.642339 + . ID=CGI_10025173; scaffold1267 TRF Tandem_Repeat 843170 843512 402 + . . scaffold1267 TRF Tandem_Repeat 843170 843520 578 + . . scaffold1267 TRF Tandem_Repeat 843170 843520 403 + . . scaffold1267 TRF Tandem_Repeat 845694 845728 70 + . . scaffold1267 TRF Tandem_Repeat 846764 846866 179 + . . scaffold1267 TRF Tandem_Repeat 847937 847983 58 + . . scaffold1267 WUBlastX LINE_RTE-BovB 853671 853856 57 - . . scaffold1267 TRF Tandem_Repeat 853988 856538 1018 + . . scaffold1267 TRF Tandem_Repeat 854018 856177 409 + . . scaffold1267 TRF Tandem_Repeat 854018 856538 755 + . . scaffold1267 TRF Tandem_Repeat 856258 856539 160 + . . scaffold1267 TRF Tandem_Repeat 856919 856985 134 + . . scaffold1267 TRF Tandem_Repeat 858044 858709 1005 + . . scaffold1267 TRF Tandem_Repeat 860334 860522 236 + . . scaffold1267 TRF Tandem_Repeat 860344 860885 249 + . . scaffold1267 TRF Tandem_Repeat 860530 860885 328 + . . scaffold1267 TRF Tandem_Repeat 862494 862539 92 + . . scaffold1267 TRF Tandem_Repeat 863276 863473 324 + . . scaffold1267 GLEAN mRNA 864385 877176 0.648545 - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 864862 865194 468 + . . scaffold1267 TRF Tandem_Repeat 866693 866732 53 + . . scaffold1267 TRF Tandem_Repeat 866696 866732 65 + . . scaffold1267 TRF Tandem_Repeat 867818 868102 347 + . . scaffold1267 TRF Tandem_Repeat 869209 869424 312 + . . scaffold1267 WUBlastX DNA_TcMar-Tc2 873129 873485 101 - . . scaffold1267 GLEAN promoter 877177 878176 0.648545 - . ID=CGI_10025174; scaffold1267 TRF Tandem_Repeat 877430 877972 780 + . . scaffold1267 TRF Tandem_Repeat 878032 878306 418 + . . scaffold1267 TRF Tandem_Repeat 889395 890338 1086 + . . scaffold1267 WUBlastX LINE_L2 893166 893438 62 - . . scaffold1267 GLEAN promoter 914570 915569 1 + . ID=CGI_10025175; scaffold1267 GLEAN mRNA 915570 916298 1 + . ID=CGI_10025175; scaffold1267 GLEAN mRNA 923630 939567 0.999674 - . ID=CGI_10025176; scaffold1267 TRF Tandem_Repeat 925195 925246 104 + . . scaffold1267 TRF Tandem_Repeat 932009 932036 56 + . . scaffold1267 GLEAN promoter 939568 940567 0.999674 - . ID=CGI_10025176; scaffold1267 GLEAN mRNA 941909 942841 0.956823 - . ID=CGI_10025177; scaffold1267 GLEAN promoter 942842 943841 0.956823 - . ID=CGI_10025177; scaffold1267 TRF Tandem_Repeat 943181 943258 77 + . . scaffold1267 TRF Tandem_Repeat 952275 952316 84 + . . scaffold1267 TRF Tandem_Repeat 958645 958690 92 + . . scaffold1267 TRF Tandem_Repeat 975637 975682 92 + . . scaffold1267 GLEAN promoter 976175 977174 0.52004 + . ID=CGI_10025178; scaffold1267 GLEAN mRNA 977175 980490 0.52004 + . ID=CGI_10025178; scaffold1267 TRF Tandem_Repeat 980206 980271 132 + . . scaffold1267 GLEAN promoter 984065 985064 1 + . ID=CGI_10025179; scaffold1267 GLEAN mRNA 985065 993572 1 + . ID=CGI_10025179; scaffold1267 TRF Tandem_Repeat 998588 998638 102 + . . scaffold1267 TRF Tandem_Repeat 1008532 1008628 173 + . . scaffold1267 TRF Tandem_Repeat 1008707 1008785 149 + . . scaffold1267 TRF Tandem_Repeat 1016363 1016448 100 + . . scaffold1267 TRF Tandem_Repeat 1019219 1019366 153 + . . scaffold1267 TRF Tandem_Repeat 1019270 1019366 139 + . . scaffold1267 TRF Tandem_Repeat 1021542 1021916 284 + . . scaffold1267 TRF Tandem_Repeat 1021542 1021916 240 + . . scaffold1267 TRF Tandem_Repeat 1021542 1021916 255 + . . scaffold1267 TRF Tandem_Repeat 1021607 1021814 158 + . . scaffold1267 TRF Tandem_Repeat 1022908 1023253 213 + . . scaffold1267 TRF Tandem_Repeat 1022908 1023231 202 + . . scaffold1267 TRF Tandem_Repeat 1022913 1023080 170 + . . scaffold1267 GLEAN mRNA 1024228 1030662 0.999673 - . ID=CGI_10025180; scaffold1267 GLEAN promoter 1029598 1030597 0.995555 + . ID=CGI_10025181; scaffold1267 TRF Tandem_Repeat 1029916 1029977 90 + . . scaffold1267 GLEAN mRNA 1030598 1050254 0.995555 + . ID=CGI_10025181; scaffold1267 GLEAN promoter 1030663 1031662 0.999673 - . ID=CGI_10025180; scaffold1267 GLEAN mRNA 1041483 1041854 0.999068 - . ID=CGI_10025182; scaffold1267 GLEAN promoter 1041855 1042854 0.999068 - . ID=CGI_10025182; scaffold1267 WUBlastX LINE_RTE-X 1044356 1044853 183 + . . scaffold1267 WUBlastX LINE_RTE-X 1044637 1045167 102 + . . scaffold1267 WUBlastX LINE_RTE-X 1045200 1045442 124 + . . scaffold1267 WUBlastX LINE_RTE-X 1045200 1045529 71 + . . scaffold1267 TRF Tandem_Repeat 1045611 1046996 1736 + . . scaffold1267 TRF Tandem_Repeat 1047275 1047311 65 + . . scaffold1268 GLEAN mRNA 1409 3412 1 - . ID=CGI_10000281; scaffold1268 GLEAN promoter 3413 3658 1 - . ID=CGI_10000281; scaffold1269 GLEAN mRNA 2493 2870 0.69447 - . ID=CGI_10000792; scaffold1269 GLEAN promoter 2871 3870 0.69447 - . ID=CGI_10000792; scaffold127 GLEAN promoter 5859 6858 0.965908 + . ID=CGI_10004403; scaffold127 GLEAN mRNA 6859 7116 0.965908 + . ID=CGI_10004403; scaffold127 TRF Tandem_Repeat 12977 13005 58 + . . scaffold127 GLEAN promoter 15636 16635 0.997324 + . ID=CGI_10004404; scaffold127 GLEAN mRNA 16636 43326 0.997324 + . ID=CGI_10004404; scaffold127 TRF Tandem_Repeat 37442 37502 50 + . . scaffold127 TRF Tandem_Repeat 37574 37637 58 + . . scaffold127 TRF Tandem_Repeat 37574 37660 77 + . . scaffold127 TRF Tandem_Repeat 38148 38186 78 + . . scaffold127 TRF Tandem_Repeat 39211 39251 82 + . . scaffold127 TRF Tandem_Repeat 39440 39480 73 + . . scaffold127 TRF Tandem_Repeat 40200 40286 86 + . . scaffold127 TRF Tandem_Repeat 40359 40419 50 + . . scaffold127 TRF Tandem_Repeat 42125 42161 67 + . . scaffold127 TRF Tandem_Repeat 45270 45318 53 + . . scaffold127 GLEAN mRNA 49171 50355 1 - . ID=CGI_10004405; scaffold127 GLEAN promoter 50356 51355 1 - . ID=CGI_10004405; scaffold127 TRF Tandem_Repeat 53308 53382 127 + . . scaffold127 GLEAN promoter 54740 55739 0.354904 + . ID=CGI_10004406; scaffold127 GLEAN mRNA 55740 60036 0.354904 + . ID=CGI_10004406; scaffold127 TRF Tandem_Repeat 70895 70996 77 + . . scaffold127 GLEAN promoter 75604 76603 0.841401 + . ID=CGI_10004407; scaffold127 GLEAN mRNA 76604 77650 0.841401 + . ID=CGI_10004407; scaffold127 WUBlastX DNA_Crypton 76934 77515 94 + . . scaffold127 TRF Tandem_Repeat 78913 79320 414 + . . scaffold127 TRF Tandem_Repeat 83696 83980 410 + . . scaffold127 TRF Tandem_Repeat 83705 83980 321 + . . scaffold127 TRF Tandem_Repeat 83752 83812 54 + . . scaffold127 GLEAN promoter 88640 89639 0.98039 + . ID=CGI_10004408; scaffold127 GLEAN mRNA 89640 94263 0.98039 + . ID=CGI_10004408; scaffold127 TRF Tandem_Repeat 96118 96408 327 + . . scaffold127 TRF Tandem_Repeat 99011 99057 53 + . . scaffold1271 GLEAN mRNA 994 11666 0.649525 - . ID=CGI_10002566; scaffold1271 GLEAN promoter 11426 12425 0.721747 + . ID=CGI_10002567; scaffold1271 GLEAN promoter 11667 12666 0.649525 - . ID=CGI_10002566; scaffold1271 GLEAN mRNA 12426 30464 0.721747 + . ID=CGI_10002567; scaffold1271 GLEAN mRNA 32735 44488 0.811653 - . ID=CGI_10002568; scaffold1271 GLEAN promoter 33217 34216 0.560677 + . ID=CGI_10002569; scaffold1271 GLEAN mRNA 34217 34474 0.560677 + . ID=CGI_10002569; scaffold1271 GLEAN promoter 44489 45488 0.811653 - . ID=CGI_10002568; scaffold1271 GLEAN mRNA 47620 48634 1 - . ID=CGI_10002570; scaffold1271 GLEAN promoter 48635 49634 1 - . ID=CGI_10002570; scaffold1272 WUBlastX LINE_Penelope 2966 3253 48 + . . scaffold1272 WUBlastX LINE_Penelope 3068 3328 72 + . . scaffold1272 WUBlastX LINE_Penelope 5066 5587 31 + . . scaffold1272 TRF Tandem_Repeat 8635 9049 455 + . . scaffold1272 TRF Tandem_Repeat 15504 15541 51 + . . scaffold1272 TRF Tandem_Repeat 17609 17829 257 + . . scaffold1272 GLEAN mRNA 18792 24869 0.551444 - . ID=CGI_10008304; scaffold1272 TRF Tandem_Repeat 23662 23701 53 + . . scaffold1272 GLEAN promoter 24870 25869 0.551444 - . ID=CGI_10008304; scaffold1272 TRF Tandem_Repeat 29017 29054 76 + . . scaffold1272 GLEAN promoter 30337 31336 0.889748 + . ID=CGI_10008305; scaffold1272 GLEAN mRNA 31337 32779 0.889748 + . ID=CGI_10008305; scaffold1272 TRF Tandem_Repeat 31988 32032 54 + . . scaffold1272 WUBlastX DNA_Chapaev 33802 34539 28 + . . scaffold1272 WUBlastX DNA_Chapaev 33988 34623 53 + . . scaffold1272 WUBlastX DNA_Chapaev 34168 34569 69 + . . scaffold1272 WUBlastX DNA_Chapaev 34231 34539 75 + . . scaffold1272 WUBlastX DNA_Chapaev 34649 35029 30 + . . scaffold1272 WUBlastX DNA_Chapaev 34730 35146 64 + . . scaffold1272 TRF Tandem_Repeat 35840 35864 50 + . . scaffold1272 WUBlastX LTR_Ngaro 38761 38832 39 + . . scaffold1272 WUBlastX LTR_Ngaro 38910 39239 83 + . . scaffold1272 WUBlastX LTR_Ngaro 38919 39143 110 + . . scaffold1272 WUBlastX LTR_Ngaro 39512 39718 34 + . . scaffold1272 WUBlastX LTR_Ngaro 39539 39709 38 + . . scaffold1272 WUBlastX LTR_Ngaro 39554 39655 45 + . . scaffold1272 WUBlastX LTR_Ngaro 39557 39790 33 + . . scaffold1272 WUBlastX LTR_Ngaro 39773 40267 41 + . . scaffold1272 WUBlastX LTR_Ngaro 39779 39955 63 + . . scaffold1272 WUBlastX LTR_Ngaro 40351 40578 29 + . . scaffold1272 WUBlastX LTR_Ngaro 40644 40739 26 + . . scaffold1272 WUBlastX LINE_L1-Tx1 41052 41111 32 + . . scaffold1272 WUBlastX LINE_L1-Tx1 41470 42036 48 + . . scaffold1272 WUBlastX LINE_L1-Tx1 41557 42042 59 + . . scaffold1272 GLEAN promoter 58329 59328 0.836238 + . ID=CGI_10008306; scaffold1272 GLEAN mRNA 59329 63479 0.836238 + . ID=CGI_10008306; scaffold1272 TRF Tandem_Repeat 64808 64881 123 + . . scaffold1272 TRF Tandem_Repeat 67975 68086 70 + . . scaffold1272 TRF Tandem_Repeat 68264 68357 63 + . . scaffold1272 GLEAN promoter 68936 69935 0.861711 + . ID=CGI_10008307; scaffold1272 GLEAN mRNA 69936 97048 0.861711 + . ID=CGI_10008307; scaffold1272 TRF Tandem_Repeat 71736 71788 106 + . . scaffold1272 TRF Tandem_Repeat 73393 73464 117 + . . scaffold1272 TRF Tandem_Repeat 73393 73467 105 + . . scaffold1272 TRF Tandem_Repeat 74008 74284 455 + . . scaffold1272 TRF Tandem_Repeat 76450 77046 685 + . . scaffold1272 TRF Tandem_Repeat 80684 80727 88 + . . scaffold1272 WUBlastX LINE_Penelope 90154 90681 61 + . . scaffold1272 TRF Tandem_Repeat 91091 91145 53 + . . scaffold1272 TRF Tandem_Repeat 94606 94648 86 + . . scaffold1272 TRF Tandem_Repeat 104809 104856 96 + . . scaffold1272 WUBlastX LINE_L1 113694 114176 68 + . . scaffold1272 WUBlastX LINE_L1 113781 114176 151 + . . scaffold1272 WUBlastX LINE_L1-Tx1 113835 114272 71 + . . scaffold1272 WUBlastX LINE_L1-Tx1 113850 114176 253 + . . scaffold1272 WUBlastX LINE_L1-Tx1 115016 115261 62 + . . scaffold1272 WUBlastX LINE_L1 115085 115240 73 + . . scaffold1272 WUBlastX LINE_L1 115118 115258 87 + . . scaffold1272 WUBlastX LINE_L1-Tx1 115269 115553 74 + . . scaffold1272 WUBlastX LINE_L1-Tx1 115371 115550 93 + . . scaffold1272 GLEAN mRNA 119217 120297 1 - . ID=CGI_10008308; scaffold1272 GLEAN promoter 120298 121297 1 - . ID=CGI_10008308; scaffold1272 TRF Tandem_Repeat 127168 127216 98 + . . scaffold1272 TRF Tandem_Repeat 128179 128236 107 + . . scaffold1272 TRF Tandem_Repeat 132520 132567 96 + . . scaffold1272 TRF Tandem_Repeat 132567 132600 68 + . . scaffold1272 TRF Tandem_Repeat 155126 155186 113 + . . scaffold1272 GLEAN mRNA 155957 203314 0.324986 - . ID=CGI_10008310; scaffold1272 WUBlastX DNA_Harbinger 161385 162092 373 - . . scaffold1272 WUBlastX LTR_Ngaro 166458 166682 50 - . . scaffold1272 WUBlastX LTR_Ngaro 166458 166871 27 - . . scaffold1272 WUBlastX LTR_Ngaro 167091 168374 353 - . . scaffold1272 WUBlastX LTR_Ngaro 167145 168152 468 - . . scaffold1272 WUBlastX LTR_Ngaro 181120 181392 81 - . . scaffold1272 TRF Tandem_Repeat 192715 192762 96 + . . scaffold1272 TRF Tandem_Repeat 192763 192793 62 + . . scaffold1272 GLEAN promoter 203315 204314 0.324986 - . ID=CGI_10008310; scaffold1273 GLEAN mRNA 10535 11423 1 - . ID=CGI_10000922; scaffold1273 GLEAN promoter 11424 12073 1 - . ID=CGI_10000922; scaffold1274 TRF Tandem_Repeat 835 1054 180 + . . scaffold1274 WUBlastX LTR_Gypsy-Cigr 2293 2619 111 - . . scaffold1274 WUBlastX LINE_Penelope 2743 2970 23 - . . scaffold1274 WUBlastX LINE_L1-Tx1 3969 4613 60 - . . scaffold1276 GLEAN mRNA 1107 2933 0.504319 - . ID=CGI_10003437; scaffold1276 GLEAN promoter 2934 3933 0.504319 - . ID=CGI_10003437; scaffold1276 GLEAN mRNA 7140 43389 0.398616 - . ID=CGI_10003438; scaffold1276 WUBlastX LINE_RTE-BovB 28988 29221 78 + . . scaffold1276 TRF Tandem_Repeat 36161 36191 62 + . . scaffold1276 TRF Tandem_Repeat 39273 39972 1014 + . . scaffold1276 GLEAN promoter 43390 44389 0.398616 - . ID=CGI_10003438; scaffold1276 GLEAN promoter 43411 44410 1 + . ID=CGI_10003439; scaffold1276 GLEAN mRNA 44411 45662 1 + . ID=CGI_10003439; scaffold1276 GLEAN mRNA 47836 61829 0.972711 - . ID=CGI_10003440; scaffold1276 TRF Tandem_Repeat 55341 55396 112 + . . scaffold1276 GLEAN promoter 61830 62829 0.972711 - . ID=CGI_10003440; scaffold1276 TRF Tandem_Repeat 63683 63735 106 + . . scaffold1276 GLEAN mRNA 64669 73043 0.896952 - . ID=CGI_10003441; scaffold1276 TRF Tandem_Repeat 70641 70680 80 + . . scaffold1276 GLEAN promoter 73044 73510 0.896952 - . ID=CGI_10003441; scaffold1277 TRF Tandem_Repeat 58775 58817 68 + . . scaffold1277 TRF Tandem_Repeat 59022 59072 79 + . . scaffold1277 TRF Tandem_Repeat 59096 59153 107 + . . scaffold1277 TRF Tandem_Repeat 73719 73755 74 + . . scaffold1277 GLEAN mRNA 76656 92744 0.765999 - . ID=CGI_10008022; scaffold1277 WUBlastX LINE_RTE-X 82675 82872 75 + . . scaffold1277 WUBlastX LINE_RTE-X 82723 82893 78 + . . scaffold1277 WUBlastX LINE_RTE-X 82874 83008 59 + . . scaffold1277 WUBlastX LINE_RTE-X 82953 83873 277 + . . scaffold1277 GLEAN promoter 92745 93744 0.765999 - . ID=CGI_10008022; scaffold1277 WUBlastX LTR_Ngaro 99599 99700 24 - . . scaffold1277 WUBlastX LTR_Ngaro 99632 99706 27 - . . scaffold1277 WUBlastX LTR_Ngaro 99641 99745 23 - . . scaffold1277 WUBlastX LTR_Ngaro 99825 100073 33 - . . scaffold1277 WUBlastX LTR_Ngaro 99984 100076 42 - . . scaffold1277 WUBlastX LINE_L1 106585 106671 20 + . . scaffold1277 WUBlastX LINE_RTE-X 107634 109007 775 + . . scaffold1277 TRF Tandem_Repeat 119937 119962 52 + . . scaffold1277 TRF Tandem_Repeat 119989 120033 90 + . . scaffold1277 TRF Tandem_Repeat 122046 122150 176 + . . scaffold1277 TRF Tandem_Repeat 132814 132840 54 + . . scaffold1277 TRF Tandem_Repeat 132928 132958 62 + . . scaffold1277 TRF Tandem_Repeat 133055 133099 54 + . . scaffold1277 WUBlastX LINE_L1 145846 146055 29 - . . scaffold1277 WUBlastX LINE_L1 146099 146434 59 - . . scaffold1277 WUBlastX LINE_L1 146195 146434 61 - . . scaffold1277 WUBlastX LINE_L1-Tx1 146412 146585 25 - . . scaffold1277 WUBlastX LINE_L1 146415 146459 33 - . . scaffold1277 WUBlastX LINE_L1-Tx1 146415 146507 32 - . . scaffold1277 WUBlastX LINE_L1-Tx1 146618 146677 36 - . . scaffold1277 GLEAN promoter 147949 148948 0.999825 + . ID=CGI_10008023; scaffold1277 GLEAN mRNA 148949 172576 0.999825 + . ID=CGI_10008023; scaffold1277 TRF Tandem_Repeat 157629 157661 66 + . . scaffold1277 TRF Tandem_Repeat 161661 161790 95 + . . scaffold1277 TRF Tandem_Repeat 161776 162017 161 + . . scaffold1277 TRF Tandem_Repeat 161836 162017 166 + . . scaffold1277 TRF Tandem_Repeat 163470 163657 257 + . . scaffold1277 TRF Tandem_Repeat 163516 163657 112 + . . scaffold1277 TRF Tandem_Repeat 163525 163583 64 + . . scaffold1277 TRF Tandem_Repeat 169842 169901 120 + . . scaffold1277 TRF Tandem_Repeat 170318 170373 94 + . . scaffold1277 GLEAN promoter 179148 180147 1 + . ID=CGI_10008024; scaffold1277 GLEAN mRNA 180148 200196 1 + . ID=CGI_10008024; scaffold1277 TRF Tandem_Repeat 186010 186351 316 + . . scaffold1277 TRF Tandem_Repeat 186027 186352 372 + . . scaffold1277 WUBlastX LTR_Gypsy 191892 192899 366 - . . scaffold1277 WUBlastX LTR_Gypsy 192015 193082 228 - . . scaffold1277 WUBlastX LTR_Gypsy 192063 192755 433 - . . scaffold1278 GLEAN mRNA 1369 25679 0.392208 - . ID=CGI_10001566; scaffold1278 GLEAN promoter 22011 23010 1 + . ID=CGI_10001567; scaffold1278 GLEAN mRNA 23011 25461 1 + . ID=CGI_10001567; scaffold1278 GLEAN promoter 25680 25827 0.392208 - . ID=CGI_10001566; scaffold1279 GLEAN mRNA 103 26229 0.498941 - . ID=CGI_10004028; scaffold1279 GLEAN promoter 26230 27229 0.498941 - . ID=CGI_10004028; scaffold1279 GLEAN promoter 71643 72642 0.999161 + . ID=CGI_10004029; scaffold1279 GLEAN mRNA 72643 84849 0.999161 + . ID=CGI_10004029; scaffold1279 GLEAN mRNA 86146 88704 0.734569 - . ID=CGI_10004030; scaffold1279 GLEAN promoter 88705 89000 0.734569 - . ID=CGI_10004030; scaffold128 WUBlastX LINE_R2-Hero 2450 2851 94 - . . scaffold128 TRF Tandem_Repeat 19760 19809 100 + . . scaffold128 TRF Tandem_Repeat 25254 26274 1567 + . . scaffold128 TRF Tandem_Repeat 26436 26492 80 + . . scaffold128 TRF Tandem_Repeat 26436 26493 64 + . . scaffold128 TRF Tandem_Repeat 29972 29997 52 + . . scaffold128 GLEAN mRNA 33403 42761 0.999548 - . ID=CGI_10021503; scaffold128 TRF Tandem_Repeat 35968 35998 53 + . . scaffold128 TRF Tandem_Repeat 37057 37082 52 + . . scaffold128 GLEAN promoter 42762 43761 0.999548 - . ID=CGI_10021503; scaffold128 TRF Tandem_Repeat 45464 45513 55 + . . scaffold128 WUBlastX DNA_TcMar-Tc1 52503 53423 339 + . . scaffold128 WUBlastX DNA_TcMar-Tc1 53413 53490 29 + . . scaffold128 GLEAN mRNA 54342 63516 0.993133 - . ID=CGI_10021504; scaffold128 WUBlastX DNA_IS4EU 56494 56793 44 + . . scaffold128 WUBlastX DNA_Kolobok-IS4 57217 58290 133 + . . scaffold128 WUBlastX DNA_IS4EU 57415 58302 203 + . . scaffold128 WUBlastX DNA_Kolobok-IS4 58710 59600 447 - . . scaffold128 WUBlastX DNA_IS4EU 60626 60973 57 - . . scaffold128 WUBlastX DNA_IS4EU 60752 60892 58 - . . scaffold128 TRF Tandem_Repeat 62917 62954 76 + . . scaffold128 GLEAN promoter 63517 64516 0.993133 - . ID=CGI_10021504; scaffold128 TRF Tandem_Repeat 64282 64375 161 + . . scaffold128 TRF Tandem_Repeat 70484 70534 93 + . . scaffold128 GLEAN mRNA 70675 71190 0.999592 - . ID=CGI_10021505; scaffold128 GLEAN promoter 71191 72190 0.999592 - . ID=CGI_10021505; scaffold128 GLEAN promoter 75343 76342 0.41081 + . ID=CGI_10021506; scaffold128 GLEAN mRNA 76343 79470 0.41081 + . ID=CGI_10021506; scaffold128 TRF Tandem_Repeat 78273 78363 80 + . . scaffold128 TRF Tandem_Repeat 78886 79008 97 + . . scaffold128 TRF Tandem_Repeat 78886 79000 123 + . . scaffold128 GLEAN mRNA 84183 98663 0.995613 - . ID=CGI_10021507; scaffold128 WUBlastX DNA_TcMar-Tc1 87026 87388 74 + . . scaffold128 WUBlastX DNA_TcMar-Tc1 87149 87376 87 + . . scaffold128 WUBlastX DNA_TcMar-Tc1 87399 87713 61 + . . scaffold128 WUBlastX DNA_TcMar-Tc1 87402 87593 113 + . . scaffold128 WUBlastX DNA_TcMar-Tc1 87402 87644 100 + . . scaffold128 WUBlastX LINE_L2 91094 91849 313 + . . scaffold128 WUBlastX LINE_CR1-L2 91097 92038 56 + . . scaffold128 WUBlastX LINE_Penelope 93295 93429 44 - . . scaffold128 WUBlastX LINE_Penelope 93337 93471 57 - . . scaffold128 WUBlastX LINE_Penelope 93477 93545 47 - . . scaffold128 WUBlastX LINE_Penelope 93477 93617 41 - . . scaffold128 WUBlastX LINE_Penelope 94121 94699 34 - . . scaffold128 WUBlastX LINE_Penelope 94223 94699 185 - . . scaffold128 WUBlastX LINE_Penelope 96736 96900 72 - . . scaffold128 WUBlastX LINE_Penelope 96760 96885 81 - . . scaffold128 WUBlastX DNA_Crypton 97373 97579 79 - . . scaffold128 GLEAN promoter 98664 99663 0.995613 - . ID=CGI_10021507; scaffold128 GLEAN mRNA 100789 103176 0.99999 - . ID=CGI_10021508; scaffold128 GLEAN promoter 103177 104176 0.99999 - . ID=CGI_10021508; scaffold128 WUBlastX LINE_RTE-BovB 117143 117289 50 + . . scaffold128 WUBlastX LINE_RTE-X 117279 118121 170 + . . scaffold128 GLEAN mRNA 119795 124529 0.290216 - . ID=CGI_10021509; scaffold128 WUBlastX LINE_RTE-X 122015 122290 43 + . . scaffold128 WUBlastX LINE_RTE-X 122186 122311 82 + . . scaffold128 WUBlastX LINE_RTE-X 122299 122802 112 + . . scaffold128 GLEAN promoter 124530 125529 0.290216 - . ID=CGI_10021509; scaffold128 TRF Tandem_Repeat 140710 140742 59 + . . scaffold128 TRF Tandem_Repeat 141312 141432 110 + . . scaffold128 WUBlastX LINE_L2 152294 152638 43 + . . scaffold128 TRF Tandem_Repeat 157986 158110 83 + . . scaffold128 GLEAN promoter 161880 162879 0.999999 + . ID=CGI_10021510; scaffold128 GLEAN mRNA 162880 165632 0.999999 + . ID=CGI_10021510; scaffold128 GLEAN promoter 169944 170943 0.999999 + . ID=CGI_10021511; scaffold128 GLEAN mRNA 170944 183454 0.999999 + . ID=CGI_10021511; scaffold128 TRF Tandem_Repeat 174785 175021 183 + . . scaffold128 TRF Tandem_Repeat 176511 176549 51 + . . scaffold128 TRF Tandem_Repeat 186631 186754 131 + . . scaffold128 TRF Tandem_Repeat 186673 186766 70 + . . scaffold128 WUBlastX LINE_Penelope 187932 188336 92 + . . scaffold128 WUBlastX LINE_Penelope 188028 188408 103 + . . scaffold128 WUBlastX LINE_Penelope 188324 189496 137 + . . scaffold128 WUBlastX LINE_Penelope 188765 189292 158 + . . scaffold128 WUBlastX LINE_RTE-X 189275 190153 348 + . . scaffold128 WUBlastX LINE_RTE-X 190119 190313 62 + . . scaffold128 WUBlastX LINE_RTE-X 190312 191025 190 + . . scaffold128 WUBlastX LINE_RTE-X 191192 191296 39 + . . scaffold128 WUBlastX LINE_RTE-X 191201 191377 25 + . . scaffold128 WUBlastX LINE_RTE-X 191207 191419 22 + . . scaffold128 WUBlastX LINE_Penelope 191620 191886 44 + . . scaffold128 WUBlastX LINE_Penelope 191982 192101 65 + . . scaffold128 TRF Tandem_Repeat 195440 195493 67 + . . scaffold128 TRF Tandem_Repeat 195443 195488 67 + . . scaffold128 TRF Tandem_Repeat 199891 199948 55 + . . scaffold128 TRF Tandem_Repeat 203798 203832 52 + . . scaffold128 TRF Tandem_Repeat 205613 205637 50 + . . scaffold128 WUBlastX DNA_PiggyBac 227895 228221 63 + . . scaffold128 WUBlastX DNA_PiggyBac 228235 228351 71 + . . scaffold128 WUBlastX DNA_PiggyBac 228362 228541 93 + . . scaffold128 WUBlastX DNA_PiggyBac 231201 231443 88 + . . scaffold128 WUBlastX DNA_PiggyBac 231261 231434 104 + . . scaffold128 WUBlastX DNA_PiggyBac 231360 232007 66 + . . scaffold128 WUBlastX DNA_PiggyBac 231549 232010 72 + . . scaffold128 WUBlastX DNA_PiggyBac 231594 231785 73 + . . scaffold128 WUBlastX DNA_PiggyBac 231600 232097 53 + . . scaffold128 WUBlastX DNA_PiggyBac 232511 232732 41 + . . scaffold128 WUBlastX DNA_PiggyBac 232559 232738 57 + . . scaffold128 TRF Tandem_Repeat 232800 232866 57 + . . scaffold128 TRF Tandem_Repeat 240692 240773 85 + . . scaffold128 TRF Tandem_Repeat 240701 240773 51 + . . scaffold128 WUBlastX DNA_TcMar-Tc1 242061 242615 350 - . . scaffold128 WUBlastX DNA_TcMar-Tc1 242061 243074 165 - . . scaffold128 GLEAN mRNA 245527 245784 1 - . ID=CGI_10021512; scaffold128 GLEAN promoter 245785 246784 1 - . ID=CGI_10021512; scaffold128 GLEAN mRNA 260220 262232 0.96488 - . ID=CGI_10021513; scaffold128 GLEAN promoter 262031 263030 1 + . ID=CGI_10021514; scaffold128 GLEAN promoter 262233 263232 0.96488 - . ID=CGI_10021513; scaffold128 GLEAN mRNA 263031 268470 1 + . ID=CGI_10021514; scaffold128 WUBlastX LTR_Gypsy-Cigr 273052 273771 68 + . . scaffold128 WUBlastX LTR_Gypsy 273052 273534 126 + . . scaffold128 WUBlastX LTR_Gypsy 273954 274214 30 + . . scaffold128 WUBlastX LTR_Gypsy 273996 274352 79 + . . scaffold128 WUBlastX LTR_Gypsy 274080 275150 258 + . . scaffold128 GLEAN promoter 274169 275168 0.999372 + . ID=CGI_10021515; scaffold128 WUBlastX LTR_Gypsy 274884 275198 95 + . . scaffold128 GLEAN mRNA 275169 275468 0.999372 + . ID=CGI_10021515; scaffold128 TRF Tandem_Repeat 279311 279341 62 + . . scaffold128 WUBlastX LTR_Gypsy 281346 281471 48 + . . scaffold128 WUBlastX LTR_Gypsy 281346 281762 46 + . . scaffold128 WUBlastX LTR_Gypsy 281346 281408 64 + . . scaffold128 WUBlastX LTR_Gypsy 281580 281801 38 + . . scaffold128 WUBlastX LTR_Gypsy 281822 283108 787 + . . scaffold128 GLEAN mRNA 283454 283705 0.516047 - . ID=CGI_10021516; scaffold128 WUBlastX LTR_Copia 283541 283651 21 + . . scaffold128 GLEAN promoter 283706 284705 0.516047 - . ID=CGI_10021516; scaffold128 WUBlastX LTR_Gypsy 283813 284208 33 + . . scaffold128 WUBlastX LTR_Gypsy-Cigr 283876 284208 121 + . . scaffold128 WUBlastX LTR_Gypsy-Cigr 283939 284211 173 + . . scaffold128 WUBlastX LTR_Gypsy 283939 284277 109 + . . scaffold128 TRF Tandem_Repeat 303855 304040 119 + . . scaffold128 TRF Tandem_Repeat 307745 307794 91 + . . scaffold128 WUBlastX DNA_TcMar-Marin 308076 308282 138 + . . scaffold128 WUBlastX DNA_TcMar-Marin 308464 308772 156 + . . scaffold128 WUBlastX DNA_TcMar-Marin 308578 308781 173 + . . scaffold128 WUBlastX DNA_TcMar-Marin 308825 308866 23 + . . scaffold128 TRF Tandem_Repeat 311461 311534 55 + . . scaffold128 TRF Tandem_Repeat 311478 311526 57 + . . scaffold128 TRF Tandem_Repeat 312773 312829 114 + . . scaffold128 GLEAN promoter 314626 315625 0.851957 + . ID=CGI_10021517; scaffold128 TRF Tandem_Repeat 314961 315013 79 + . . scaffold128 TRF Tandem_Repeat 314970 315013 70 + . . scaffold128 GLEAN mRNA 315626 330120 0.851957 + . ID=CGI_10021517; scaffold128 TRF Tandem_Repeat 318112 318159 96 + . . scaffold128 WUBlastX DNA_Kolobok 344620 344724 35 + . . scaffold128 WUBlastX DNA_Kolobok 344938 345111 100 + . . scaffold128 TRF Tandem_Repeat 355631 355700 113 + . . scaffold128 GLEAN mRNA 372887 383856 0.614041 - . ID=CGI_10021518; scaffold128 TRF Tandem_Repeat 375948 375999 86 + . . scaffold128 TRF Tandem_Repeat 375953 376002 73 + . . scaffold128 TRF Tandem_Repeat 375961 376002 57 + . . scaffold128 GLEAN promoter 383857 384856 0.614041 - . ID=CGI_10021518; scaffold128 WUBlastX DNA_Harbinger 384145 384357 91 + . . scaffold128 GLEAN mRNA 387311 389005 0.544699 - . ID=CGI_10021519; scaffold128 GLEAN promoter 389006 390005 0.544699 - . ID=CGI_10021519; scaffold128 GLEAN promoter 391815 392814 0.774499 + . ID=CGI_10021520; scaffold128 GLEAN mRNA 392815 406969 0.774499 + . ID=CGI_10021520; scaffold128 TRF Tandem_Repeat 400208 400254 51 + . . scaffold128 GLEAN promoter 407916 408915 1 + . ID=CGI_10021521; scaffold128 GLEAN mRNA 408916 417904 1 + . ID=CGI_10021521; scaffold128 TRF Tandem_Repeat 412143 412781 481 + . . scaffold128 TRF Tandem_Repeat 412143 412633 470 + . . scaffold128 TRF Tandem_Repeat 412162 412773 470 + . . scaffold128 TRF Tandem_Repeat 412640 412770 108 + . . scaffold128 GLEAN promoter 418363 419362 0.999983 + . ID=CGI_10021522; scaffold128 GLEAN mRNA 419363 419581 0.999983 + . ID=CGI_10021522; scaffold128 GLEAN promoter 427572 428571 0.997262 + . ID=CGI_10021523; scaffold128 GLEAN mRNA 428572 437056 0.997262 + . ID=CGI_10021523; scaffold128 WUBlastX LINE_RTE-X 441536 441676 64 - . . scaffold128 WUBlastX LINE_RTE-X 441660 442283 72 - . . scaffold128 WUBlastX LINE_RTE-X 444323 444565 42 + . . scaffold128 WUBlastX LINE_RTE-X 444323 444685 26 + . . scaffold128 TRF Tandem_Repeat 449798 449829 64 + . . scaffold128 TRF Tandem_Repeat 451892 451953 124 + . . scaffold128 GLEAN promoter 452917 453916 1 + . ID=CGI_10021524; scaffold128 GLEAN mRNA 453917 466309 1 + . ID=CGI_10021524; scaffold128 TRF Tandem_Repeat 454831 454888 116 + . . scaffold128 TRF Tandem_Repeat 464744 464903 193 + . . scaffold128 TRF Tandem_Repeat 464744 465215 303 + . . scaffold128 TRF Tandem_Repeat 464745 464909 134 + . . scaffold128 TRF Tandem_Repeat 464971 465071 148 + . . scaffold128 TRF Tandem_Repeat 464994 465242 293 + . . scaffold128 TRF Tandem_Repeat 464994 465242 336 + . . scaffold128 GLEAN mRNA 470114 476905 0.558056 - . ID=CGI_10021525; scaffold128 GLEAN promoter 476906 477905 0.558056 - . ID=CGI_10021525; scaffold128 GLEAN mRNA 493832 501188 0.999259 - . ID=CGI_10021526; scaffold128 GLEAN promoter 501189 502188 0.999259 - . ID=CGI_10021526; scaffold128 GLEAN mRNA 501343 510682 0.999996 - . ID=CGI_10021527; scaffold128 GLEAN promoter 510683 511682 0.999996 - . ID=CGI_10021527; scaffold128 GLEAN mRNA 512885 515427 0.794506 - . ID=CGI_10021528; scaffold128 GLEAN promoter 515428 516427 0.794506 - . ID=CGI_10021528; scaffold128 GLEAN mRNA 518234 525199 1 - . ID=CGI_10021529; scaffold128 GLEAN promoter 525200 526199 1 - . ID=CGI_10021529; scaffold128 GLEAN promoter 528779 529778 0.912709 + . ID=CGI_10021530; scaffold128 TRF Tandem_Repeat 529073 529110 60 + . . scaffold128 GLEAN mRNA 529779 535567 0.912709 + . ID=CGI_10021530; scaffold128 GLEAN mRNA 539740 566049 0.978795 - . ID=CGI_10021531; scaffold128 TRF Tandem_Repeat 553707 553758 59 + . . scaffold128 TRF Tandem_Repeat 553725 553758 68 + . . scaffold128 GLEAN promoter 566050 567049 0.978795 - . ID=CGI_10021531; scaffold128 GLEAN promoter 568506 569505 0.977611 + . ID=CGI_10021532; scaffold128 TRF Tandem_Repeat 569065 569117 106 + . . scaffold128 GLEAN mRNA 569506 570592 0.977611 + . ID=CGI_10021532; scaffold128 TRF Tandem_Repeat 572368 572418 102 + . . scaffold128 GLEAN mRNA 578008 578934 0.777738 - . ID=CGI_10021533; scaffold128 GLEAN promoter 578935 579934 0.777738 - . ID=CGI_10021533; scaffold128 WUBlastX DNA_Harbinger 584590 584769 70 - . . scaffold128 TRF Tandem_Repeat 585066 585099 68 + . . scaffold128 TRF Tandem_Repeat 623956 623986 62 + . . scaffold128 GLEAN promoter 627015 628014 0.99266 + . ID=CGI_10021534; scaffold128 GLEAN mRNA 628015 631437 0.99266 + . ID=CGI_10021534; scaffold128 GLEAN promoter 632534 633533 0.323718 + . ID=CGI_10021535; scaffold128 GLEAN mRNA 633534 640006 0.323718 + . ID=CGI_10021535; scaffold128 TRF Tandem_Repeat 640045 640100 112 + . . scaffold128 GLEAN mRNA 640571 661683 0.836156 - . ID=CGI_10021536; scaffold128 TRF Tandem_Repeat 651020 651685 670 + . . scaffold128 WUBlastX LINE_R1 651959 652027 21 + . . scaffold128 WUBlastX LINE_L2 652220 653419 213 + . . scaffold128 WUBlastX LINE_RTE-X 652412 654253 770 + . . scaffold128 GLEAN promoter 661684 662683 0.836156 - . ID=CGI_10021536; scaffold128 WUBlastX LINE_RTE-X 664457 664804 124 - . . scaffold128 WUBlastX LINE_RTE-X 664496 664897 91 - . . scaffold128 TRF Tandem_Repeat 667944 668054 107 + . . scaffold128 GLEAN promoter 668620 669619 0.771433 + . ID=CGI_10021537; scaffold128 GLEAN mRNA 669620 670153 0.771433 + . ID=CGI_10021537; scaffold128 GLEAN promoter 672532 673531 0.777728 + . ID=CGI_10021538; scaffold128 GLEAN mRNA 673532 674392 0.777728 + . ID=CGI_10021538; scaffold128 TRF Tandem_Repeat 677142 677196 110 + . . scaffold128 TRF Tandem_Repeat 684923 684966 74 + . . scaffold128 TRF Tandem_Repeat 687870 687919 84 + . . scaffold128 GLEAN promoter 689611 690610 0.999999 + . ID=CGI_10021540; scaffold128 GLEAN mRNA 690611 692341 0.999999 + . ID=CGI_10021540; scaffold1280 GLEAN promoter 1 439 1 + . ID=CGI_10000370; scaffold1280 GLEAN mRNA 440 2963 1 + . ID=CGI_10000370; scaffold1281 TRF Tandem_Repeat 248 310 54 + . . scaffold1281 TRF Tandem_Repeat 248 310 67 + . . scaffold1281 TRF Tandem_Repeat 251 307 60 + . . scaffold1281 TRF Tandem_Repeat 308 363 112 + . . scaffold1281 TRF Tandem_Repeat 665 694 60 + . . scaffold1281 GLEAN mRNA 1556 4031 0.999114 - . ID=CGI_10001419; scaffold1281 WUBlastX LINE_RTE-BovB 3938 4135 43 - . . scaffold1281 GLEAN promoter 4032 5031 0.999114 - . ID=CGI_10001419; scaffold1281 GLEAN promoter 5818 6817 0.72874 + . ID=CGI_10001420; scaffold1281 GLEAN mRNA 6818 22494 0.72874 + . ID=CGI_10001420; scaffold1281 WUBlastX LTR_Gypsy 7381 7566 34 + . . scaffold1281 WUBlastX LTR_DIRS 7932 8060 79 + . . scaffold1281 WUBlastX LTR_DIRS 8053 8259 108 + . . scaffold1281 WUBlastX LTR_DIRS 8243 8944 394 + . . scaffold1281 WUBlastX LTR_DIRS 8724 9113 195 + . . scaffold1281 WUBlastX LTR_DIRS 8994 9158 66 + . . scaffold1281 WUBlastX LTR_DIRS 9807 10085 193 + . . scaffold1281 WUBlastX LTR_DIRS 10090 10386 194 + . . scaffold1281 WUBlastX LTR_DIRS 10416 10940 214 + . . scaffold1281 WUBlastX LTR_DIRS 11742 12266 214 - . . scaffold1281 WUBlastX LTR_DIRS 12296 12592 203 - . . scaffold1281 WUBlastX LTR_DIRS 12597 12875 193 - . . scaffold1281 TRF Tandem_Repeat 18579 18619 82 + . . scaffold1282 TRF Tandem_Repeat 3989 4647 592 + . . scaffold1282 TRF Tandem_Repeat 4819 4858 53 + . . scaffold1282 TRF Tandem_Repeat 5612 5737 207 + . . scaffold1282 WUBlastX DNA_Harbinger 6727 6828 64 - . . scaffold1282 WUBlastX DNA_Harbinger 6786 7199 275 - . . scaffold1282 GLEAN mRNA 14408 20446 0.999999 - . ID=CGI_10003895; scaffold1282 GLEAN promoter 20447 21446 0.999999 - . ID=CGI_10003895; scaffold1282 GLEAN mRNA 23829 40169 0.985891 - . ID=CGI_10003896; scaffold1282 TRF Tandem_Repeat 32042 32145 199 + . . scaffold1282 TRF Tandem_Repeat 35752 35794 86 + . . scaffold1282 TRF Tandem_Repeat 37183 37340 129 + . . scaffold1282 GLEAN promoter 40170 41169 0.985891 - . ID=CGI_10003896; scaffold1282 TRF Tandem_Repeat 47529 47582 108 + . . scaffold1282 TRF Tandem_Repeat 53559 53625 134 + . . scaffold1282 TRF Tandem_Repeat 56032 56110 149 + . . scaffold1282 GLEAN mRNA 68943 80581 1 - . ID=CGI_10003897; scaffold1282 TRF Tandem_Repeat 74841 75615 1209 + . . scaffold1282 GLEAN promoter 80582 81581 1 - . ID=CGI_10003897; scaffold1282 TRF Tandem_Repeat 84519 84552 50 + . . scaffold1283 GLEAN promoter 1 238 0.98947 + . ID=CGI_10011780; scaffold1283 GLEAN mRNA 239 23348 0.98947 + . ID=CGI_10011780; scaffold1283 TRF Tandem_Repeat 12588 12621 68 + . . scaffold1283 GLEAN mRNA 16350 19742 1 - . ID=CGI_10011781; scaffold1283 GLEAN promoter 19743 20742 1 - . ID=CGI_10011781; scaffold1283 GLEAN mRNA 24169 31927 0.580414 - . ID=CGI_10011782; scaffold1283 TRF Tandem_Repeat 26197 27248 864 + . . scaffold1283 TRF Tandem_Repeat 26238 27234 759 + . . scaffold1283 TRF Tandem_Repeat 27743 28477 1326 + . . scaffold1283 GLEAN promoter 31464 32463 1 + . ID=CGI_10011783; scaffold1283 GLEAN promoter 31928 32927 0.580414 - . ID=CGI_10011782; scaffold1283 GLEAN mRNA 32464 43957 1 + . ID=CGI_10011783; scaffold1283 TRF Tandem_Repeat 33685 33794 148 + . . scaffold1283 WUBlastX LINE_RTE-X 38151 38600 146 + . . scaffold1283 WUBlastX LINE_RTE-X 38235 38591 219 + . . scaffold1283 WUBlastX LINE_RTE-X 38596 39495 166 + . . scaffold1283 WUBlastX LINE_RTE-X 39210 39647 50 + . . scaffold1283 GLEAN mRNA 46587 47807 0.777718 - . ID=CGI_10011784; scaffold1283 GLEAN promoter 47808 48807 0.777718 - . ID=CGI_10011784; scaffold1283 TRF Tandem_Repeat 48176 48265 83 + . . scaffold1283 TRF Tandem_Repeat 48285 48448 192 + . . scaffold1283 GLEAN mRNA 50365 61759 0.999936 - . ID=CGI_10011785; scaffold1283 WUBlastX LINE_RTE-X 51645 51986 52 + . . scaffold1283 WUBlastX LINE_RTE-X 51684 51863 67 + . . scaffold1283 TRF Tandem_Repeat 55884 57181 1596 + . . scaffold1283 TRF Tandem_Repeat 57617 58494 882 + . . scaffold1283 TRF Tandem_Repeat 57617 58494 915 + . . scaffold1283 TRF Tandem_Repeat 60014 60163 149 + . . scaffold1283 TRF Tandem_Repeat 60273 60459 239 + . . scaffold1283 GLEAN promoter 61760 62759 0.999936 - . ID=CGI_10011785; scaffold1283 GLEAN mRNA 63969 68783 1 - . ID=CGI_10011786; scaffold1283 TRF Tandem_Repeat 65166 67128 2657 + . . scaffold1283 TRF Tandem_Repeat 65166 67128 2675 + . . scaffold1283 GLEAN promoter 68784 69783 1 - . ID=CGI_10011786; scaffold1283 GLEAN mRNA 69946 70910 1 - . ID=CGI_10011787; scaffold1283 GLEAN promoter 70911 71910 1 - . ID=CGI_10011787; scaffold1283 GLEAN promoter 78547 79546 0.999676 + . ID=CGI_10011788; scaffold1283 TRF Tandem_Repeat 78745 78775 62 + . . scaffold1283 GLEAN mRNA 79547 85404 0.999676 + . ID=CGI_10011788; scaffold1283 TRF Tandem_Repeat 86095 88807 3384 + . . scaffold1283 TRF Tandem_Repeat 89434 89480 58 + . . scaffold1283 GLEAN mRNA 90052 92930 1 - . ID=CGI_10011789; scaffold1283 GLEAN promoter 92931 93930 1 - . ID=CGI_10011789; scaffold1283 GLEAN mRNA 94857 95063 1 - . ID=CGI_10011790; scaffold1283 GLEAN promoter 95064 96063 1 - . ID=CGI_10011790; scaffold1283 GLEAN mRNA 95291 96418 1 - . ID=CGI_10011791; scaffold1283 GLEAN promoter 96419 97418 1 - . ID=CGI_10011791; scaffold1283 TRF Tandem_Repeat 107174 107234 59 + . . scaffold1283 TRF Tandem_Repeat 107175 107234 57 + . . scaffold1283 TRF Tandem_Repeat 107187 107233 67 + . . scaffold1283 TRF Tandem_Repeat 109256 109307 95 + . . scaffold1283 TRF Tandem_Repeat 132620 132698 158 + . . scaffold1283 TRF Tandem_Repeat 143399 143467 120 + . . scaffold1283 WUBlastX LINE_L1-Tx1 146111 146170 23 + . . scaffold1283 WUBlastX LINE_RTE-RTE 146636 146713 28 + . . scaffold1283 WUBlastX LINE_L1-Tx1 146672 148606 601 + . . scaffold1283 WUBlastX LINE_L1 147356 148891 357 + . . scaffold1283 TRF Tandem_Repeat 148940 149050 73 + . . scaffold1283 WUBlastX LINE_L1-Tx1 149303 149449 31 + . . scaffold1283 TRF Tandem_Repeat 154995 155180 345 + . . scaffold1283 TRF Tandem_Repeat 162361 162404 52 + . . scaffold1283 TRF Tandem_Repeat 162362 162411 64 + . . scaffold1283 TRF Tandem_Repeat 162362 162411 64 + . . scaffold1283 TRF Tandem_Repeat 162435 163393 1447 + . . scaffold1283 GLEAN mRNA 163503 189745 0.981099 - . ID=CGI_10011792; scaffold1283 TRF Tandem_Repeat 163819 163890 56 + . . scaffold1283 GLEAN promoter 189746 190745 0.981099 - . ID=CGI_10011792; scaffold1283 WUBlastX LINE_L1 190316 190678 56 + . . scaffold1283 WUBlastX LINE_L1-Tx1 190725 190865 27 + . . scaffold1283 WUBlastX LINE_L1 191221 191379 32 + . . scaffold1283 WUBlastX LINE_L1-Tx1 191357 191989 130 + . . scaffold1283 WUBlastX LINE_L1 192025 192144 20 + . . scaffold1283 GLEAN mRNA 206197 234977 0.3561 - . ID=CGI_10011794; scaffold1283 TRF Tandem_Repeat 215474 215765 404 + . . scaffold1283 TRF Tandem_Repeat 215481 215828 239 + . . scaffold1283 TRF Tandem_Repeat 215483 215597 58 + . . scaffold1283 TRF Tandem_Repeat 215755 216658 992 + . . scaffold1283 TRF Tandem_Repeat 219553 219859 176 + . . scaffold1283 TRF Tandem_Repeat 219606 219920 434 + . . scaffold1283 TRF Tandem_Repeat 222956 223130 341 + . . scaffold1283 TRF Tandem_Repeat 226506 226559 67 + . . scaffold1283 TRF Tandem_Repeat 226509 226554 67 + . . scaffold1283 TRF Tandem_Repeat 226893 227101 364 + . . scaffold1283 TRF Tandem_Repeat 234005 234280 543 + . . scaffold1283 GLEAN promoter 234978 235977 0.3561 - . ID=CGI_10011794; scaffold1283 GLEAN promoter 236683 237682 1 + . ID=CGI_10011795; scaffold1283 GLEAN mRNA 237683 239167 1 + . ID=CGI_10011795; scaffold1283 GLEAN mRNA 240961 258563 0.432673 - . ID=CGI_10011796; scaffold1283 TRF Tandem_Repeat 241859 241910 104 + . . scaffold1283 TRF Tandem_Repeat 245660 245763 190 + . . scaffold1283 WUBlastX DNA_TcMar-Marin 249818 249931 46 + . . scaffold1283 WUBlastX DNA_TcMar-Marin 250376 250573 27 + . . scaffold1283 GLEAN promoter 258564 259563 0.432673 - . ID=CGI_10011796; scaffold1283 WUBlastX LINE_L2 259327 259578 108 + . . scaffold1283 WUBlastX LINE_L2 259399 259725 73 + . . scaffold1283 TRF Tandem_Repeat 292377 292447 115 + . . scaffold1283 TRF Tandem_Repeat 293541 293570 60 + . . scaffold1283 WUBlastX DNA_TcMar-Marin 296603 297046 44 + . . scaffold1283 TRF Tandem_Repeat 300664 300704 82 + . . scaffold1284 GLEAN promoter 6945 7944 0.999986 + . ID=CGI_10001409; scaffold1284 GLEAN mRNA 7945 20880 0.999986 + . ID=CGI_10001409; scaffold1286 TRF Tandem_Repeat 1580 1628 80 + . . scaffold1286 GLEAN mRNA 2541 6494 0.999936 - . ID=CGI_10009504; scaffold1286 WUBlastX LINE_CR1 4189 4302 27 - . . scaffold1286 WUBlastX LINE_L2 4242 4367 29 - . . scaffold1286 WUBlastX LINE_CR1 4412 4600 36 - . . scaffold1286 WUBlastX LINE_CR1 4442 4600 37 - . . scaffold1286 WUBlastX LINE_CR1 4799 5122 59 - . . scaffold1286 WUBlastX LINE_CR1 4826 5056 90 - . . scaffold1286 GLEAN promoter 6495 7494 0.999936 - . ID=CGI_10009504; scaffold1286 TRF Tandem_Repeat 7648 7684 74 + . . scaffold1286 GLEAN promoter 9335 10334 1 + . ID=CGI_10009505; scaffold1286 GLEAN mRNA 10335 13503 1 + . ID=CGI_10009505; scaffold1286 GLEAN mRNA 10444 11450 1 - . ID=CGI_10009506; scaffold1286 GLEAN promoter 11451 12450 1 - . ID=CGI_10009506; scaffold1286 TRF Tandem_Repeat 12464 12503 80 + . . scaffold1286 TRF Tandem_Repeat 13687 13732 60 + . . scaffold1286 TRF Tandem_Repeat 13687 13721 61 + . . scaffold1286 TRF Tandem_Repeat 13688 13733 51 + . . scaffold1286 GLEAN promoter 14362 15361 1 + . ID=CGI_10009507; scaffold1286 GLEAN mRNA 15362 17027 1 + . ID=CGI_10009507; scaffold1286 TRF Tandem_Repeat 18253 18300 96 + . . scaffold1286 GLEAN promoter 24687 25686 0.660843 + . ID=CGI_10009508; scaffold1286 GLEAN mRNA 25687 35466 0.660843 + . ID=CGI_10009508; scaffold1286 WUBlastX DNA_TcMar-Tc2 31515 31649 71 - . . scaffold1286 WUBlastX DNA_TcMar-Tc2 31619 31954 70 - . . scaffold1286 GLEAN mRNA 38035 57959 0.99939 - . ID=CGI_10009509; scaffold1286 GLEAN promoter 57679 58678 1 + . ID=CGI_10009510; scaffold1286 GLEAN promoter 57960 58959 0.99939 - . ID=CGI_10009509; scaffold1286 GLEAN mRNA 58679 60747 1 + . ID=CGI_10009510; scaffold1286 GLEAN mRNA 63652 76201 0.726937 - . ID=CGI_10009511; scaffold1286 TRF Tandem_Repeat 66473 66548 80 + . . scaffold1286 TRF Tandem_Repeat 66478 66548 97 + . . scaffold1286 GLEAN promoter 76202 77201 0.726937 - . ID=CGI_10009511; scaffold1286 TRF Tandem_Repeat 85140 85202 126 + . . scaffold1286 GLEAN mRNA 91979 92621 1 - . ID=CGI_10009512; scaffold1286 GLEAN promoter 92622 93621 1 - . ID=CGI_10009512; scaffold1286 GLEAN promoter 96278 97277 0.998858 + . ID=CGI_10009513; scaffold1286 GLEAN mRNA 97278 98256 0.998858 + . ID=CGI_10009513; scaffold1286 GLEAN mRNA 98601 123345 0.396375 - . ID=CGI_10009514; scaffold1286 WUBlastX LINE_CR1 114146 114373 99 - . . scaffold1286 WUBlastX LINE_CR1 114228 114698 50 - . . scaffold1286 WUBlastX LINE_CR1 114432 114557 95 - . . scaffold1286 WUBlastX LINE_CR1 114432 114674 61 - . . scaffold1286 GLEAN promoter 121557 122556 0.677907 + . ID=CGI_10009515; scaffold1286 GLEAN mRNA 122557 148738 0.677907 + . ID=CGI_10009515; scaffold1286 GLEAN promoter 123346 124345 0.396375 - . ID=CGI_10009514; scaffold1286 TRF Tandem_Repeat 150109 150236 130 + . . scaffold1286 TRF Tandem_Repeat 150286 150477 120 + . . scaffold1286 TRF Tandem_Repeat 150288 150464 97 + . . scaffold1286 TRF Tandem_Repeat 156738 156806 52 + . . scaffold1286 WUBlastX DNA_Harbinger 157951 158100 69 - . . scaffold1286 TRF Tandem_Repeat 158427 158494 136 + . . scaffold1286 TRF Tandem_Repeat 158609 158672 51 + . . scaffold1286 WUBlastX DNA_MuDR 161091 162464 134 + . . scaffold1286 WUBlastX DNA_MuDR 161745 162404 198 + . . scaffold1286 TRF Tandem_Repeat 163547 163589 86 + . . scaffold1286 GLEAN promoter 171460 172459 0.535502 + . ID=CGI_10009516; scaffold1286 GLEAN mRNA 172460 179755 0.535502 + . ID=CGI_10009516; scaffold1286 TRF Tandem_Repeat 176895 176942 96 + . . scaffold1286 GLEAN promoter 182749 183748 0.683696 + . ID=CGI_10009517; scaffold1286 GLEAN mRNA 183749 189813 0.683696 + . ID=CGI_10009517; scaffold1286 TRF Tandem_Repeat 188814 188888 116 + . . scaffold1286 GLEAN mRNA 196917 204567 1 - . ID=CGI_10009518; scaffold1286 GLEAN promoter 204568 205567 1 - . ID=CGI_10009518; scaffold1286 GLEAN promoter 206452 207451 0.911294 + . ID=CGI_10009519; scaffold1286 GLEAN mRNA 207452 210887 0.911294 + . ID=CGI_10009519; scaffold1286 TRF Tandem_Repeat 230709 230742 68 + . . scaffold1286 TRF Tandem_Repeat 232410 232661 310 + . . scaffold1287 GLEAN promoter 943 1942 1 + . ID=CGI_10002198; scaffold1287 GLEAN mRNA 1943 4525 1 + . ID=CGI_10002198; scaffold1287 GLEAN promoter 3896 4895 1 + . ID=CGI_10002199; scaffold1287 GLEAN mRNA 4896 6104 1 + . ID=CGI_10002199; scaffold1287 GLEAN mRNA 7294 8154 1 - . ID=CGI_10002201; scaffold1287 GLEAN promoter 8155 9154 1 - . ID=CGI_10002201; scaffold1287 GLEAN mRNA 12807 19161 0.243589 - . ID=CGI_10002204; scaffold1287 GLEAN promoter 18881 19880 0.531613 + . ID=CGI_10002205; scaffold1287 GLEAN promoter 19162 20161 0.243589 - . ID=CGI_10002204; scaffold1287 GLEAN mRNA 19881 21761 0.531613 + . ID=CGI_10002205; scaffold1287 GLEAN mRNA 32875 33327 0.86591 - . ID=CGI_10002209; scaffold1287 GLEAN promoter 33328 34327 0.86591 - . ID=CGI_10002209; scaffold1287 GLEAN mRNA 38686 39294 0.481511 - . ID=CGI_10002213; scaffold1287 GLEAN promoter 39295 39446 0.481511 - . ID=CGI_10002213; scaffold1288 GLEAN promoter 634 1633 0.99909 + . ID=CGI_10010911; scaffold1288 GLEAN mRNA 1634 25033 0.99909 + . ID=CGI_10010911; scaffold1288 GLEAN mRNA 29879 52135 0.998981 - . ID=CGI_10010912; scaffold1288 TRF Tandem_Repeat 46394 46446 51 + . . scaffold1288 TRF Tandem_Repeat 46409 46451 68 + . . scaffold1288 GLEAN promoter 52136 53135 0.998981 - . ID=CGI_10010912; scaffold1288 WUBlastX LINE_RTE-BovB 52511 52591 45 + . . scaffold1288 WUBlastX LINE_RTE-BovB 52608 52676 31 + . . scaffold1288 GLEAN mRNA 53765 72316 0.592769 - . ID=CGI_10010913; scaffold1288 TRF Tandem_Repeat 55633 55799 235 + . . scaffold1288 TRF Tandem_Repeat 58024 58381 467 + . . scaffold1288 TRF Tandem_Repeat 58042 58405 385 + . . scaffold1288 TRF Tandem_Repeat 58051 58405 471 + . . scaffold1288 TRF Tandem_Repeat 60479 60737 241 + . . scaffold1288 GLEAN promoter 72317 73316 0.592769 - . ID=CGI_10010913; scaffold1288 TRF Tandem_Repeat 74983 75384 241 + . . scaffold1288 TRF Tandem_Repeat 74988 75384 346 + . . scaffold1288 GLEAN promoter 76588 77587 0.989529 + . ID=CGI_10010914; scaffold1288 TRF Tandem_Repeat 76959 77000 84 + . . scaffold1288 GLEAN mRNA 77588 105488 0.989529 + . ID=CGI_10010914; scaffold1288 GLEAN promoter 109455 110454 0.999999 + . ID=CGI_10010915; scaffold1288 GLEAN mRNA 110455 117255 0.999999 + . ID=CGI_10010915; scaffold1288 TRF Tandem_Repeat 112357 112404 96 + . . scaffold1288 TRF Tandem_Repeat 115063 115389 434 + . . scaffold1288 TRF Tandem_Repeat 116580 116695 65 + . . scaffold1288 TRF Tandem_Repeat 116594 116870 308 + . . scaffold1288 TRF Tandem_Repeat 121125 121213 62 + . . scaffold1288 GLEAN mRNA 122629 157575 0.993766 - . ID=CGI_10010916; scaffold1288 TRF Tandem_Repeat 136519 136821 510 + . . scaffold1288 TRF Tandem_Repeat 138351 138722 478 + . . scaffold1288 TRF Tandem_Repeat 138351 138733 423 + . . scaffold1288 TRF Tandem_Repeat 145539 145754 180 + . . scaffold1288 GLEAN promoter 152887 153886 0.949718 + . ID=CGI_10010917; scaffold1288 GLEAN mRNA 153887 174456 0.949718 + . ID=CGI_10010917; scaffold1288 TRF Tandem_Repeat 155863 155934 65 + . . scaffold1288 GLEAN promoter 157576 158575 0.993766 - . ID=CGI_10010916; scaffold1288 TRF Tandem_Repeat 164678 164985 537 + . . scaffold1288 TRF Tandem_Repeat 167279 167578 420 + . . scaffold1288 GLEAN promoter 180813 181812 0.800246 + . ID=CGI_10010918; scaffold1288 TRF Tandem_Repeat 180975 181010 72 + . . scaffold1288 TRF Tandem_Repeat 181010 181036 54 + . . scaffold1288 GLEAN mRNA 181813 197516 0.800246 + . ID=CGI_10010918; scaffold1288 TRF Tandem_Repeat 182314 182362 98 + . . scaffold1288 GLEAN mRNA 199936 204217 1 - . ID=CGI_10010919; scaffold1288 GLEAN promoter 203649 204648 1 + . ID=CGI_10010920; scaffold1288 GLEAN promoter 204218 205217 1 - . ID=CGI_10010919; scaffold1288 GLEAN mRNA 204649 209025 1 + . ID=CGI_10010920; scaffold1288 GLEAN promoter 211372 212371 0.999564 + . ID=CGI_10010921; scaffold1288 GLEAN mRNA 212372 214480 0.999564 + . ID=CGI_10010921; scaffold1288 GLEAN mRNA 222627 228184 1 - . ID=CGI_10010922; scaffold1288 GLEAN promoter 228185 229184 1 - . ID=CGI_10010922; scaffold1288 GLEAN promoter 234430 235429 0.833436 + . ID=CGI_10010923; scaffold1288 GLEAN mRNA 235430 236045 0.833436 + . ID=CGI_10010923; scaffold1288 TRF Tandem_Repeat 235952 235987 72 + . . scaffold1288 TRF Tandem_Repeat 236743 236785 56 + . . scaffold1288 TRF Tandem_Repeat 237014 237937 863 + . . scaffold1288 GLEAN mRNA 241936 249902 1 - . ID=CGI_10010924; scaffold1288 TRF Tandem_Repeat 245166 245303 174 + . . scaffold1288 GLEAN promoter 249903 250902 1 - . ID=CGI_10010924; scaffold1288 GLEAN promoter 252832 253831 0.999607 + . ID=CGI_10010925; scaffold1288 GLEAN mRNA 253832 265457 0.999607 + . ID=CGI_10010925; scaffold1288 TRF Tandem_Repeat 255275 256003 879 + . . scaffold1288 TRF Tandem_Repeat 255275 255563 416 + . . scaffold1288 TRF Tandem_Repeat 255566 256003 585 + . . scaffold1288 GLEAN promoter 269946 270945 1 + . ID=CGI_10010926; scaffold1288 GLEAN mRNA 270946 276438 1 + . ID=CGI_10010926; scaffold1288 GLEAN mRNA 277761 277943 1 - . ID=CGI_10010927; scaffold1288 GLEAN promoter 277944 278943 1 - . ID=CGI_10010927; scaffold1288 TRF Tandem_Repeat 277952 278347 545 + . . scaffold129 WUBlastX LTR_DIRS 16973 17383 52 - . . scaffold129 WUBlastX LTR_DIRS 17033 17371 64 - . . scaffold129 WUBlastX LTR_DIRS 17150 17374 71 - . . scaffold129 WUBlastX LINE_L1-Tx1 45198 45503 35 - . . scaffold129 WUBlastX LINE_L1-Tx1 45475 46062 56 - . . scaffold129 WUBlastX LINE_L1 45577 46065 126 - . . scaffold129 WUBlastX LINE_L1-Tx1 45793 46065 130 - . . scaffold129 WUBlastX LINE_L1-Tx1 46077 46937 154 - . . scaffold129 WUBlastX LINE_L1-Tx1 46089 47090 115 - . . scaffold129 WUBlastX LINE_L1 47036 47266 27 - . . scaffold129 WUBlastX LINE_L1-Tx1 47189 47293 36 - . . scaffold129 WUBlastX LINE_L1 47207 47281 43 - . . scaffold129 WUBlastX LINE_L1-Tx1 47275 47568 33 - . . scaffold129 WUBlastX LINE_RTE-BovB 47314 47412 41 - . . scaffold129 WUBlastX LINE_L1-Tx1 47329 47517 47 - . . scaffold129 TRF Tandem_Repeat 58601 58654 55 + . . scaffold129 WUBlastX DNA_Sola 59833 60141 53 - . . scaffold129 WUBlastX LINE_L2 61687 62043 61 + . . scaffold129 TRF Tandem_Repeat 66922 66960 60 + . . scaffold129 TRF Tandem_Repeat 76672 76745 109 + . . scaffold129 TRF Tandem_Repeat 77196 77371 156 + . . scaffold129 TRF Tandem_Repeat 77835 77940 105 + . . scaffold129 TRF Tandem_Repeat 77838 77940 68 + . . scaffold129 TRF Tandem_Repeat 81804 81913 62 + . . scaffold129 WUBlastX LINE_L1-Tx1 82507 82845 158 + . . scaffold1290 GLEAN mRNA 1201 2006 0.648931 - . ID=CGI_10005118; scaffold1290 GLEAN promoter 2007 3006 0.648931 - . ID=CGI_10005118; scaffold1290 GLEAN mRNA 4248 5811 0.418637 - . ID=CGI_10005119; scaffold1290 GLEAN promoter 5812 6811 0.418637 - . ID=CGI_10005119; scaffold1290 WUBlastX LTR_Gypsy-Cigr 6521 9358 2037 - . . scaffold1290 WUBlastX LTR_Gypsy 6605 10072 1672 - . . scaffold1290 WUBlastX LTR_Gypsy 9764 10225 45 - . . scaffold1290 WUBlastX LTR_Gypsy 9779 10141 47 - . . scaffold1290 WUBlastX LTR_Gypsy 10004 10282 41 - . . scaffold1290 WUBlastX LTR_Gypsy-Cigr 10276 10923 103 - . . scaffold1290 GLEAN mRNA 15293 15784 0.99978 - . ID=CGI_10005120; scaffold1290 GLEAN promoter 15785 16784 0.99978 - . ID=CGI_10005120; scaffold1290 TRF Tandem_Repeat 18706 18749 88 + . . scaffold1290 GLEAN mRNA 18910 30572 0.999786 - . ID=CGI_10005121; scaffold1290 GLEAN promoter 30573 31572 0.999786 - . ID=CGI_10005121; scaffold1290 GLEAN promoter 33038 34037 1 + . ID=CGI_10005122; scaffold1290 TRF Tandem_Repeat 33210 33252 86 + . . scaffold1290 GLEAN mRNA 34038 36846 1 + . ID=CGI_10005122; scaffold1290 GLEAN promoter 46657 47656 1 + . ID=CGI_10005123; scaffold1290 GLEAN mRNA 47657 51511 1 + . ID=CGI_10005123; scaffold1290 TRF Tandem_Repeat 53909 54838 1161 + . . scaffold1290 WUBlastX LTR_Gypsy 56292 57245 38 + . . scaffold1290 WUBlastX LTR_Gypsy-Cigr 56475 57221 193 + . . scaffold1290 WUBlastX LTR_Gypsy 56718 57803 133 + . . scaffold1290 TRF Tandem_Repeat 68599 68653 94 + . . scaffold1290 GLEAN promoter 72345 73344 0.836238 + . ID=CGI_10005125; scaffold1290 GLEAN mRNA 73345 74226 0.836238 + . ID=CGI_10005125; scaffold1290 TRF Tandem_Repeat 74695 74754 120 + . . scaffold1290 TRF Tandem_Repeat 117672 117719 96 + . . scaffold1293 TRF Tandem_Repeat 1795 1849 110 + . . scaffold1293 WUBlastX LINE_Penelope 10922 11206 97 - . . scaffold1293 WUBlastX LINE_Penelope 11009 11242 81 - . . scaffold1293 WUBlastX LINE_Penelope 11491 12012 91 + . . scaffold1293 TRF Tandem_Repeat 14232 14268 74 + . . scaffold1293 TRF Tandem_Repeat 15719 15765 94 + . . scaffold1293 TRF Tandem_Repeat 19521 19559 78 + . . scaffold1293 WUBlastX LINE_Penelope 24681 24923 21 + . . scaffold1293 WUBlastX LINE_Jockey 25264 25548 41 - . . scaffold1293 WUBlastX LINE_RTE-X 25264 25494 52 - . . scaffold1293 WUBlastX LINE_Jockey 25306 25479 56 - . . scaffold1293 WUBlastX LINE_Jockey 25342 25476 60 - . . scaffold1293 WUBlastX LINE_Penelope 28688 28963 47 - . . scaffold1293 WUBlastX LINE_Penelope 28778 28963 57 - . . scaffold1293 TRF Tandem_Repeat 76243 76280 51 + . . scaffold1293 TRF Tandem_Repeat 79329 80234 1236 + . . scaffold1293 WUBlastX LTR_Gypsy 87910 88032 20 - . . scaffold1293 WUBlastX LTR_Gypsy 87955 88044 33 - . . scaffold1293 WUBlastX LTR_Gypsy 87973 88062 22 - . . scaffold1293 WUBlastX LTR_DIRS 88290 89270 173 - . . scaffold1293 WUBlastX LTR_DIRS 88831 90129 372 - . . scaffold1293 WUBlastX LTR_DIRS 89278 90156 394 - . . scaffold1293 GLEAN mRNA 112683 113273 0.702216 - . ID=CGI_10015858; scaffold1293 GLEAN promoter 113274 114273 0.702216 - . ID=CGI_10015858; scaffold1293 WUBlastX LTR_Gypsy 113310 113732 81 - . . scaffold1293 WUBlastX LTR_Gypsy 113379 113732 83 - . . scaffold1293 WUBlastX LTR_Gypsy-Cigr 113442 113759 108 - . . scaffold1293 WUBlastX LTR_Gypsy 113592 114668 72 - . . scaffold1293 WUBlastX LTR_Gypsy 113925 114680 151 - . . scaffold1293 WUBlastX LTR_Gypsy-Cigr 114216 114719 183 - . . scaffold1293 TRF Tandem_Repeat 116206 116244 69 + . . scaffold1293 TRF Tandem_Repeat 116710 116800 73 + . . scaffold1293 TRF Tandem_Repeat 119564 119621 98 + . . scaffold1293 GLEAN promoter 122569 123568 0.992461 + . ID=CGI_10015859; scaffold1293 GLEAN mRNA 123569 136750 0.992461 + . ID=CGI_10015859; scaffold1293 TRF Tandem_Repeat 128897 128944 96 + . . scaffold1293 TRF Tandem_Repeat 132779 132852 87 + . . scaffold1293 TRF Tandem_Repeat 133022 134534 2145 + . . scaffold1293 WUBlastX LTR_Ngaro 141200 141673 109 - . . scaffold1293 TRF Tandem_Repeat 148312 148367 112 + . . scaffold1293 WUBlastX LINE_Penelope 150763 150840 43 - . . scaffold1293 WUBlastX LINE_Penelope 150810 151298 82 - . . scaffold1293 WUBlastX LINE_Penelope 150975 151298 103 - . . scaffold1293 WUBlastX LINE_Penelope 151252 151413 34 - . . scaffold1293 WUBlastX LINE_Penelope 151372 151476 23 - . . scaffold1293 GLEAN mRNA 154816 183715 0.990352 - . ID=CGI_10015860; scaffold1293 TRF Tandem_Repeat 165762 166146 467 + . . scaffold1293 TRF Tandem_Repeat 181427 181615 360 + . . scaffold1293 TRF Tandem_Repeat 181759 181895 265 + . . scaffold1293 GLEAN promoter 183716 184715 0.990352 - . ID=CGI_10015860; scaffold1293 GLEAN promoter 187008 188007 0.969339 + . ID=CGI_10015861; scaffold1293 GLEAN mRNA 188008 192244 0.969339 + . ID=CGI_10015861; scaffold1293 GLEAN mRNA 197505 197741 0.999372 - . ID=CGI_10015862; scaffold1293 GLEAN promoter 197742 198741 0.999372 - . ID=CGI_10015862; scaffold1293 TRF Tandem_Repeat 210837 210884 96 + . . scaffold1293 TRF Tandem_Repeat 211851 211886 72 + . . scaffold1293 TRF Tandem_Repeat 216514 216538 50 + . . scaffold1293 GLEAN promoter 223031 224030 0.999999 + . ID=CGI_10015863; scaffold1293 GLEAN mRNA 224031 227072 0.999999 + . ID=CGI_10015863; scaffold1293 GLEAN promoter 230912 231911 0.618241 + . ID=CGI_10015864; scaffold1293 GLEAN mRNA 231912 232136 0.618241 + . ID=CGI_10015864; scaffold1293 TRF Tandem_Repeat 235956 236033 147 + . . scaffold1293 TRF Tandem_Repeat 254216 254249 68 + . . scaffold1293 TRF Tandem_Repeat 257983 258027 90 + . . scaffold1293 GLEAN promoter 271882 272881 1 + . ID=CGI_10015865; scaffold1293 GLEAN mRNA 272882 273265 1 + . ID=CGI_10015865; scaffold1293 GLEAN promoter 273565 274564 1 + . ID=CGI_10015866; scaffold1293 GLEAN mRNA 274565 276472 1 + . ID=CGI_10015866; scaffold1293 GLEAN mRNA 284730 284951 1 - . ID=CGI_10015867; scaffold1293 GLEAN promoter 284952 285951 1 - . ID=CGI_10015867; scaffold1293 GLEAN mRNA 288331 314169 0.794425 - . ID=CGI_10015868; scaffold1293 TRF Tandem_Repeat 301424 301457 68 + . . scaffold1293 TRF Tandem_Repeat 308672 308706 70 + . . scaffold1293 GLEAN promoter 314170 315169 0.794425 - . ID=CGI_10015868; scaffold1293 GLEAN mRNA 315831 353420 0.986589 - . ID=CGI_10015869; scaffold1293 TRF Tandem_Repeat 319027 319097 88 + . . scaffold1293 TRF Tandem_Repeat 320937 321041 103 + . . scaffold1293 TRF Tandem_Repeat 327085 327125 82 + . . scaffold1293 GLEAN promoter 338183 339182 0.842827 + . ID=CGI_10015870; scaffold1293 GLEAN mRNA 339183 340514 0.842827 + . ID=CGI_10015870; scaffold1293 TRF Tandem_Repeat 345724 345750 54 + . . scaffold1293 GLEAN promoter 353421 354420 0.986589 - . ID=CGI_10015869; scaffold1293 TRF Tandem_Repeat 356749 356779 55 + . . scaffold1293 GLEAN mRNA 357729 363954 0.98785 - . ID=CGI_10015871; scaffold1293 GLEAN promoter 363955 364954 0.98785 - . ID=CGI_10015871; scaffold1293 TRF Tandem_Repeat 366055 366168 60 + . . scaffold1293 TRF Tandem_Repeat 366055 366168 67 + . . scaffold1293 TRF Tandem_Repeat 366189 366244 55 + . . scaffold1293 TRF Tandem_Repeat 368464 368492 58 + . . scaffold1293 GLEAN promoter 369486 370485 0.811185 + . ID=CGI_10015872; scaffold1293 GLEAN mRNA 370486 390470 0.811185 + . ID=CGI_10015872; scaffold1293 GLEAN mRNA 376710 396808 0.998315 - . ID=CGI_10015873; scaffold1293 TRF Tandem_Repeat 386772 386816 81 + . . scaffold1293 TRF Tandem_Repeat 390279 390313 70 + . . scaffold1293 GLEAN promoter 396809 397808 0.998315 - . ID=CGI_10015873; scaffold1293 GLEAN promoter 417217 418216 0.999999 + . ID=CGI_10015874; scaffold1293 GLEAN mRNA 418217 422995 0.999999 + . ID=CGI_10015874; scaffold1293 GLEAN promoter 429146 430145 0.916319 + . ID=CGI_10015875; scaffold1293 GLEAN mRNA 430146 444170 0.916319 + . ID=CGI_10015875; scaffold1293 TRF Tandem_Repeat 433032 433329 233 + . . scaffold1293 TRF Tandem_Repeat 433669 433977 343 + . . scaffold1295 WUBlastX LTR_Gypsy 1879 1944 37 + . . scaffold1295 WUBlastX LTR_Lenti 1894 1953 40 + . . scaffold1295 WUBlastX LTR_ERVK 2571 2747 38 + . . scaffold1295 WUBlastX LTR_Copia 2613 2816 32 + . . scaffold1295 WUBlastX LTR_Copia 2769 2855 28 + . . scaffold1295 WUBlastX LTR_Copia 3185 3346 30 + . . scaffold1296 WUBlastX LTR_Copia 240 572 41 + . . scaffold1296 WUBlastX LTR_Copia 297 572 66 + . . scaffold1296 WUBlastX LTR_Copia 360 572 146 + . . scaffold1296 WUBlastX LTR_Copia 847 1779 1081 + . . scaffold1297 GLEAN mRNA 2512 14284 0.999674 - . ID=CGI_10003519; scaffold1297 GLEAN promoter 14285 15284 0.999674 - . ID=CGI_10003519; scaffold1297 GLEAN mRNA 16432 16668 0.99937 - . ID=CGI_10003520; scaffold1297 GLEAN promoter 16669 17668 0.99937 - . ID=CGI_10003520; scaffold1297 GLEAN promoter 20158 21157 0.838025 + . ID=CGI_10003521; scaffold1297 GLEAN mRNA 21158 73778 0.838025 + . ID=CGI_10003521; scaffold1298 GLEAN promoter 190 1189 0.739676 + . ID=CGI_10000856; scaffold1298 GLEAN mRNA 1190 10313 0.739676 + . ID=CGI_10000856; scaffold1299 GLEAN mRNA 1926 14111 0.933951 - . ID=CGI_10007575; scaffold1299 GLEAN promoter 14112 15111 0.933951 - . ID=CGI_10007575; scaffold1299 GLEAN promoter 18497 19496 0.593391 + . ID=CGI_10007576; scaffold1299 GLEAN mRNA 19497 47457 0.593391 + . ID=CGI_10007576; scaffold1299 TRF Tandem_Repeat 28550 28593 88 + . . scaffold1299 TRF Tandem_Repeat 31538 31639 188 + . . scaffold1299 GLEAN mRNA 51997 61253 0.999654 - . ID=CGI_10007577; scaffold1299 TRF Tandem_Repeat 59675 59779 56 + . . scaffold1299 TRF Tandem_Repeat 59701 59765 67 + . . scaffold1299 GLEAN promoter 61254 62253 0.999654 - . ID=CGI_10007577; scaffold1299 GLEAN mRNA 64433 72852 0.884307 - . ID=CGI_10007578; scaffold1299 GLEAN promoter 67816 68815 0.999676 + . ID=CGI_10007579; scaffold1299 GLEAN mRNA 68816 76008 0.999676 + . ID=CGI_10007579; scaffold1299 GLEAN promoter 72853 73852 0.884307 - . ID=CGI_10007578; scaffold1299 TRF Tandem_Repeat 77856 79546 1695 + . . scaffold1299 GLEAN promoter 81026 82025 1 + . ID=CGI_10007580; scaffold1299 GLEAN mRNA 82026 82376 1 + . ID=CGI_10007580; scaffold1299 TRF Tandem_Repeat 84667 84702 72 + . . scaffold1299 TRF Tandem_Repeat 84700 84734 70 + . . scaffold1299 TRF Tandem_Repeat 85060 85096 74 + . . scaffold1299 GLEAN mRNA 87852 89681 0.994793 - . ID=CGI_10007581; scaffold1299 GLEAN promoter 89682 90681 0.994793 - . ID=CGI_10007581; scaffold1299 TRF Tandem_Repeat 92752 94469 2884 + . . scaffold1299 GLEAN mRNA 99045 107635 0.814101 - . ID=CGI_10007582; scaffold1299 TRF Tandem_Repeat 105662 105707 51 + . . scaffold1299 GLEAN promoter 107636 108635 0.814101 - . ID=CGI_10007582; scaffold1299 GLEAN mRNA 107766 127470 0.662391 - . ID=CGI_10007583; scaffold1299 GLEAN promoter 113555 114554 1 + . ID=CGI_10007584; scaffold1299 GLEAN mRNA 114555 115688 1 + . ID=CGI_10007584; scaffold1299 TRF Tandem_Repeat 124854 124928 150 + . . scaffold1299 TRF Tandem_Repeat 125332 125391 111 + . . scaffold1299 GLEAN promoter 127471 128470 0.662391 - . ID=CGI_10007583; scaffold1299 GLEAN promoter 128056 129055 1 + . ID=CGI_10007585; scaffold1299 GLEAN mRNA 129056 130605 1 + . ID=CGI_10007585; scaffold1299 TRF Tandem_Repeat 130987 131055 138 + . . scaffold1299 GLEAN promoter 131868 132867 0.923911 + . ID=CGI_10007586; scaffold1299 GLEAN mRNA 132868 184987 0.923911 + . ID=CGI_10007586; scaffold1299 TRF Tandem_Repeat 133678 133713 72 + . . scaffold1299 TRF Tandem_Repeat 137018 137091 148 + . . scaffold1299 WUBlastX LINE_L1-Tx1 138488 138685 47 - . . scaffold1299 WUBlastX LINE_L1 138494 138661 60 - . . scaffold1299 WUBlastX LINE_RTE-BovB 139253 139909 42 - . . scaffold1299 WUBlastX LINE_RTE-BovB 139259 139771 137 - . . scaffold1299 WUBlastX LINE_RTE-BovB 139911 140441 234 - . . scaffold1299 WUBlastX LINE_RTE-BovB 139995 140450 296 - . . scaffold1299 WUBlastX LINE_L1 140007 140579 95 - . . scaffold1299 WUBlastX LINE_RTE-BovB 140527 140601 33 - . . scaffold1299 WUBlastX LINE_RTE-BovB 140606 141202 162 - . . scaffold1299 WUBlastX LINE_RTE-BovB 141262 141357 69 - . . scaffold1299 WUBlastX LINE_RTE-BovB 141360 141473 71 - . . scaffold1299 WUBlastX LINE_RTE-BovB 141478 141657 58 - . . scaffold1299 WUBlastX LINE_RTE-BovB 141478 141612 81 - . . scaffold1299 TRF Tandem_Repeat 156208 156246 53 + . . scaffold1299 GLEAN mRNA 161235 162394 1 - . ID=CGI_10007587; scaffold1299 GLEAN promoter 162395 163394 1 - . ID=CGI_10007587; scaffold1299 TRF Tandem_Repeat 164930 164963 59 + . . scaffold13 GLEAN promoter 303 1302 1 + . ID=CGI_10013193; scaffold13 GLEAN mRNA 1303 2527 1 + . ID=CGI_10013193; scaffold13 GLEAN promoter 3258 4257 0.992455 + . ID=CGI_10013194; scaffold13 GLEAN mRNA 4258 15888 0.992455 + . ID=CGI_10013194; scaffold13 TRF Tandem_Repeat 7062 7094 59 + . . scaffold13 GLEAN mRNA 17885 35459 0.999997 - . ID=CGI_10013195; scaffold13 TRF Tandem_Repeat 24728 24785 102 + . . scaffold13 GLEAN promoter 35460 36459 0.999997 - . ID=CGI_10013195; scaffold13 TRF Tandem_Repeat 36890 37114 298 + . . scaffold13 GLEAN promoter 37091 38090 0.999372 + . ID=CGI_10013196; scaffold13 TRF Tandem_Repeat 37207 37485 267 + . . scaffold13 GLEAN mRNA 38091 38315 0.999372 + . ID=CGI_10013196; scaffold13 WUBlastX LINE_RTE-X 41117 41398 26 - . . scaffold13 WUBlastX LINE_RTE-X 41905 42027 27 - . . scaffold13 WUBlastX LINE_RTE-X 41905 41970 32 - . . scaffold13 WUBlastX LINE_RTE-X 42114 42659 57 - . . scaffold13 WUBlastX LINE_RTE-X 42261 42770 159 - . . scaffold13 TRF Tandem_Repeat 44552 45005 529 + . . scaffold13 TRF Tandem_Repeat 47121 47158 60 + . . scaffold13 TRF Tandem_Repeat 48575 48625 102 + . . scaffold13 GLEAN promoter 56985 57984 0.999664 + . ID=CGI_10013197; scaffold13 GLEAN mRNA 57985 70902 0.999664 + . ID=CGI_10013197; scaffold13 GLEAN mRNA 69739 92923 0.999999 - . ID=CGI_10013198; scaffold13 TRF Tandem_Repeat 72427 73363 1119 + . . scaffold13 TRF Tandem_Repeat 78552 78683 94 + . . scaffold13 TRF Tandem_Repeat 87408 87799 651 + . . scaffold13 TRF Tandem_Repeat 87408 87802 576 + . . scaffold13 GLEAN promoter 92585 93584 1 + . ID=CGI_10013199; scaffold13 GLEAN promoter 92924 93923 0.999999 - . ID=CGI_10013198; scaffold13 GLEAN mRNA 93585 96181 1 + . ID=CGI_10013199; scaffold13 GLEAN promoter 95382 96381 0.558395 + . ID=CGI_10013200; scaffold13 GLEAN mRNA 96382 101251 0.558395 + . ID=CGI_10013200; scaffold13 TRF Tandem_Repeat 96865 97346 653 + . . scaffold13 TRF Tandem_Repeat 98029 98244 243 + . . scaffold13 TRF Tandem_Repeat 98846 99012 250 + . . scaffold13 TRF Tandem_Repeat 98846 99032 218 + . . scaffold13 TRF Tandem_Repeat 100409 100523 94 + . . scaffold13 GLEAN promoter 103907 104906 0.999981 + . ID=CGI_10013201; scaffold13 TRF Tandem_Repeat 104120 104261 88 + . . scaffold13 TRF Tandem_Repeat 104153 104352 294 + . . scaffold13 GLEAN mRNA 104907 109173 0.999981 + . ID=CGI_10013201; scaffold13 TRF Tandem_Repeat 106791 107316 701 + . . scaffold13 GLEAN promoter 111352 112351 1 + . ID=CGI_10013202; scaffold13 GLEAN mRNA 112352 118814 1 + . ID=CGI_10013202; scaffold13 TRF Tandem_Repeat 113053 113792 519 + . . scaffold13 TRF Tandem_Repeat 113057 113792 626 + . . scaffold13 TRF Tandem_Repeat 116508 116574 80 + . . scaffold13 TRF Tandem_Repeat 117980 118046 80 + . . scaffold13 GLEAN promoter 118028 119027 0.999996 + . ID=CGI_10013203; scaffold13 GLEAN mRNA 119028 120461 0.999996 + . ID=CGI_10013203; scaffold13 GLEAN promoter 120736 121735 0.999992 + . ID=CGI_10013204; scaffold13 GLEAN mRNA 121736 127612 0.999992 + . ID=CGI_10013204; scaffold13 WUBlastX LINE_Penelope 126592 126987 33 + . . scaffold13 GLEAN promoter 128804 129803 0.999907 + . ID=CGI_10013205; scaffold13 GLEAN mRNA 129804 135055 0.999907 + . ID=CGI_10013205; scaffold13 GLEAN mRNA 134789 137366 0.999674 - . ID=CGI_10013206; scaffold13 GLEAN promoter 137367 138366 0.999674 - . ID=CGI_10013206; scaffold13 TRF Tandem_Repeat 142483 142623 168 + . . scaffold13 TRF Tandem_Repeat 142666 142941 306 + . . scaffold13 TRF Tandem_Repeat 143345 143597 455 + . . scaffold13 TRF Tandem_Repeat 143599 143808 321 + . . scaffold13 WUBlastX DNA_PiggyBac 147767 149473 658 - . . scaffold13 WUBlastX DNA_En-Spm 159179 159601 118 + . . scaffold13 TRF Tandem_Repeat 159821 159846 52 + . . scaffold13 TRF Tandem_Repeat 161748 162547 1113 + . . scaffold13 WUBlastX LTR_Ngaro 169737 170000 35 - . . scaffold13 WUBlastX LTR_Ngaro 169785 170000 70 - . . scaffold13 WUBlastX LTR_Ngaro 169809 169991 99 - . . scaffold13 TRF Tandem_Repeat 170040 170091 68 + . . scaffold13 TRF Tandem_Repeat 170045 170095 75 + . . scaffold13 TRF Tandem_Repeat 170519 171297 1104 + . . scaffold13 GLEAN promoter 171056 172055 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_hAT-Blackja 171969 172121 26 + . . scaffold13 GLEAN mRNA 172056 194004 0.998501 + . ID=CGI_10013207; scaffold13 WUBlastX DNA_hAT-Blackja 172275 172496 46 + . . scaffold13 TRF Tandem_Repeat 173581 174089 493 + . . scaffold13 TRF Tandem_Repeat 174562 174696 227 + . . scaffold13 TRF Tandem_Repeat 180657 180703 78 + . . scaffold13 TRF Tandem_Repeat 180658 180707 66 + . . scaffold13 TRF Tandem_Repeat 187467 187500 68 + . . scaffold13 WUBlastX DNA_IS4EU 192130 193032 28 + . . scaffold13 WUBlastX DNA_IS4EU 192397 193050 60 + . . scaffold13 WUBlastX DNA_IS4EU 193300 193425 36 + . . scaffold13 TRF Tandem_Repeat 200533 200563 62 + . . scaffold13 TRF Tandem_Repeat 203307 203356 66 + . . scaffold13 TRF Tandem_Repeat 203733 203774 84 + . . scaffold13 TRF Tandem_Repeat 205135 205188 81 + . . scaffold13 TRF Tandem_Repeat 222569 222614 56 + . . scaffold13 TRF Tandem_Repeat 222576 222631 51 + . . scaffold13 TRF Tandem_Repeat 223953 223993 73 + . . scaffold13 TRF Tandem_Repeat 229508 229556 98 + . . scaffold13 TRF Tandem_Repeat 238326 238387 115 + . . scaffold13 WUBlastX DNA_IS4EU 239554 240447 433 + . . scaffold13 WUBlastX DNA_IS4EU 240429 240551 38 + . . scaffold13 TRF Tandem_Repeat 243643 243707 103 + . . scaffold13 TRF Tandem_Repeat 252484 252533 100 + . . scaffold13 TRF Tandem_Repeat 252900 252948 55 + . . scaffold13 TRF Tandem_Repeat 255259 255303 63 + . . scaffold13 TRF Tandem_Repeat 262341 262370 60 + . . scaffold13 TRF Tandem_Repeat 293842 293873 55 + . . scaffold13 TRF Tandem_Repeat 296512 296550 78 + . . scaffold13 WUBlastX LINE_Penelope 307094 307441 54 - . . scaffold13 WUBlastX LINE_Penelope 307178 307444 79 - . . scaffold13 WUBlastX DNA_Harbinger 321719 321994 68 - . . scaffold13 WUBlastX DNA_Harbinger 324108 324875 187 - . . scaffold13 WUBlastX DNA_Harbinger 324225 324914 200 - . . scaffold13 TRF Tandem_Repeat 329529 329554 52 + . . scaffold13 TRF Tandem_Repeat 330572 330597 52 + . . scaffold13 GLEAN mRNA 334280 334597 0.958527 - . ID=CGI_10013208; scaffold13 GLEAN promoter 334598 335597 0.958527 - . ID=CGI_10013208; scaffold13 GLEAN mRNA 338304 338977 1 - . ID=CGI_10013209; scaffold13 GLEAN promoter 338978 339977 1 - . ID=CGI_10013209; scaffold13 WUBlastX LTR_Pao 340032 340217 27 + . . scaffold130 WUBlastX LINE_RTE-X 8 346 218 + . . scaffold130 WUBlastX LINE_RTE-X 303 1241 583 + . . scaffold130 WUBlastX LINE_RTE-X 636 1370 105 + . . scaffold130 TRF Tandem_Repeat 1513 1543 62 + . . scaffold130 WUBlastX LINE_RTE-X 2555 2818 56 - . . scaffold1300 GLEAN mRNA 313 5801 0.962315 - . ID=CGI_10000472; scaffold1300 GLEAN promoter 5802 5931 0.962315 - . ID=CGI_10000472; scaffold1301 WUBlastX LTR_Gypsy 34 171 33 - . . scaffold1301 WUBlastX LTR_Gypsy-Cigr 73 171 78 - . . scaffold1301 WUBlastX LTR_Gypsy 129 284 84 - . . scaffold1301 WUBlastX LTR_Gypsy 206 478 111 - . . scaffold1301 WUBlastX LTR_Gypsy 290 607 75 - . . scaffold1301 WUBlastX LTR_Gypsy 290 556 96 - . . scaffold1301 WUBlastX LTR_Gypsy 293 709 55 - . . scaffold1301 WUBlastX LTR_Gypsy-Cigr 293 481 116 - . . scaffold1301 WUBlastX DNA_TcMar-Tc1 842 1177 132 - . . scaffold1301 WUBlastX DNA_TcMar-Tc1 842 1240 64 - . . scaffold1301 WUBlastX DNA_TcMar-Tc1 842 1123 173 - . . scaffold1301 WUBlastX DNA_TcMar-Tc1 2020 2106 20 - . . scaffold1301 GLEAN mRNA 2664 3357 0.991247 - . ID=CGI_10027700; scaffold1301 GLEAN promoter 3358 4357 0.991247 - . ID=CGI_10027700; scaffold1301 TRF Tandem_Repeat 11930 12063 114 + . . scaffold1301 TRF Tandem_Repeat 11975 12061 131 + . . scaffold1301 TRF Tandem_Repeat 13336 13367 64 + . . scaffold1301 TRF Tandem_Repeat 16831 16881 102 + . . scaffold1301 GLEAN mRNA 19872 21281 0.998274 - . ID=CGI_10027701; scaffold1301 GLEAN promoter 21282 22281 0.998274 - . ID=CGI_10027701; scaffold1301 WUBlastX DNA_Zator 28217 28429 56 - . . scaffold1301 WUBlastX DNA_Zator 28908 29387 143 - . . scaffold1301 WUBlastX DNA_Zator 29398 29832 132 - . . scaffold1301 WUBlastX DNA_Zator 30730 30900 107 - . . scaffold1301 WUBlastX DNA_Zator 30872 31144 73 - . . scaffold1301 WUBlastX LTR_Gypsy 31591 32457 528 + . . scaffold1301 WUBlastX LTR_Gypsy 32406 33128 83 + . . scaffold1301 WUBlastX LTR_Gypsy 32571 35924 2809 + . . scaffold1301 WUBlastX RC_Helitron 37428 37874 30 - . . scaffold1301 TRF Tandem_Repeat 41751 41789 60 + . . scaffold1301 WUBlastX DNA_Maverick 46901 47335 232 - . . scaffold1301 WUBlastX DNA_Maverick 46901 48004 175 - . . scaffold1301 WUBlastX DNA_Maverick 48001 48312 42 - . . scaffold1301 WUBlastX DNA_Maverick 48337 48753 124 - . . scaffold1301 GLEAN mRNA 50247 56946 0.59019 - . ID=CGI_10027702; scaffold1301 GLEAN promoter 56947 57946 0.59019 - . ID=CGI_10027702; scaffold1301 TRF Tandem_Repeat 58234 58322 80 + . . scaffold1301 TRF Tandem_Repeat 58534 58573 62 + . . scaffold1301 WUBlastX DNA_hAT-Tip100 60193 60249 22 - . . scaffold1301 WUBlastX DNA_hAT-Tip100 60292 60639 94 - . . scaffold1301 WUBlastX DNA_hAT-Charlie 60639 60872 79 - . . scaffold1301 WUBlastX DNA_hAT 60804 61103 102 - . . scaffold1301 WUBlastX DNA_hAT-Tip100 63416 63487 20 - . . scaffold1301 WUBlastX DNA_hAT-Charlie 63678 63944 62 - . . scaffold1301 GLEAN mRNA 63902 64216 0.618186 - . ID=CGI_10027703; scaffold1301 WUBlastX DNA_hAT 63914 64168 66 - . . scaffold1301 GLEAN promoter 64217 65216 0.618186 - . ID=CGI_10027703; scaffold1301 GLEAN mRNA 69784 74292 0.984414 - . ID=CGI_10027704; scaffold1301 TRF Tandem_Repeat 71272 71305 68 + . . scaffold1301 GLEAN promoter 74293 75292 0.984414 - . ID=CGI_10027704; scaffold1301 TRF Tandem_Repeat 78316 78445 92 + . . scaffold1301 TRF Tandem_Repeat 78317 78446 78 + . . scaffold1301 TRF Tandem_Repeat 78325 78451 81 + . . scaffold1301 TRF Tandem_Repeat 78332 78444 82 + . . scaffold1301 TRF Tandem_Repeat 79184 79249 54 + . . scaffold1301 TRF Tandem_Repeat 79188 79249 58 + . . scaffold1301 TRF Tandem_Repeat 79265 79363 64 + . . scaffold1301 TRF Tandem_Repeat 85739 85782 88 + . . scaffold1301 TRF Tandem_Repeat 91737 92847 1072 + . . scaffold1301 TRF Tandem_Repeat 97759 97794 72 + . . scaffold1301 GLEAN promoter 126474 127473 0.999886 + . ID=CGI_10027705; scaffold1301 GLEAN mRNA 127474 141992 0.999886 + . ID=CGI_10027705; scaffold1301 GLEAN mRNA 143748 145787 0.981977 - . ID=CGI_10027706; scaffold1301 GLEAN promoter 145788 146787 0.981977 - . ID=CGI_10027706; scaffold1301 TRF Tandem_Repeat 146500 146542 86 + . . scaffold1301 TRF Tandem_Repeat 152226 152347 145 + . . scaffold1301 GLEAN mRNA 154758 160303 0.999623 - . ID=CGI_10027707; scaffold1301 GLEAN promoter 159573 160572 1 + . ID=CGI_10027708; scaffold1301 GLEAN promoter 160304 161303 0.999623 - . ID=CGI_10027707; scaffold1301 GLEAN mRNA 160573 165680 1 + . ID=CGI_10027708; scaffold1301 TRF Tandem_Repeat 162729 163118 227 + . . scaffold1301 GLEAN promoter 193943 194942 0.999542 + . ID=CGI_10027709; scaffold1301 GLEAN mRNA 194943 214255 0.999542 + . ID=CGI_10027709; scaffold1301 TRF Tandem_Repeat 210113 210166 108 + . . scaffold1301 GLEAN mRNA 212485 214501 0.985313 - . ID=CGI_10027710; scaffold1301 GLEAN promoter 213582 214581 0.998692 + . ID=CGI_10027711; scaffold1301 GLEAN promoter 214502 215501 0.985313 - . ID=CGI_10027710; scaffold1301 GLEAN mRNA 214582 251452 0.998692 + . ID=CGI_10027711; scaffold1301 TRF Tandem_Repeat 242007 242088 164 + . . scaffold1301 GLEAN promoter 254359 255358 0.998061 + . ID=CGI_10027712; scaffold1301 GLEAN mRNA 255359 264985 0.998061 + . ID=CGI_10027712; scaffold1301 TRF Tandem_Repeat 265772 265807 72 + . . scaffold1301 WUBlastX LINE_CR1 276956 277120 69 + . . scaffold1301 WUBlastX LINE_CR1 277131 277289 67 + . . scaffold1301 WUBlastX LINE_CR1 277180 277323 39 + . . scaffold1301 GLEAN promoter 281020 282019 0.999855 + . ID=CGI_10027713; scaffold1301 GLEAN mRNA 282020 286170 0.999855 + . ID=CGI_10027713; scaffold1301 TRF Tandem_Repeat 289929 289977 98 + . . scaffold1301 TRF Tandem_Repeat 295144 295287 225 + . . scaffold1301 WUBlastX DNA_Kolobok 295668 295949 121 - . . scaffold1301 TRF Tandem_Repeat 300156 300191 72 + . . scaffold1301 TRF Tandem_Repeat 304661 304939 409 + . . scaffold1301 TRF Tandem_Repeat 304730 305093 311 + . . scaffold1301 GLEAN mRNA 311038 320027 0.984699 - . ID=CGI_10027714; scaffold1301 WUBlastX LTR_Ngaro 316577 317398 48 + . . scaffold1301 WUBlastX LTR_Ngaro 316598 317287 142 + . . scaffold1301 WUBlastX LTR_Ngaro 317475 319052 1078 + . . scaffold1301 WUBlastX LTR_Ngaro 318962 319939 346 + . . scaffold1301 WUBlastX LTR_Ngaro 319673 319993 38 + . . scaffold1301 GLEAN promoter 320028 321027 0.984699 - . ID=CGI_10027714; scaffold1301 TRF Tandem_Repeat 320982 321060 63 + . . scaffold1301 TRF Tandem_Repeat 320990 321055 53 + . . scaffold1301 TRF Tandem_Repeat 324523 324559 74 + . . scaffold1301 TRF Tandem_Repeat 328112 328152 82 + . . scaffold1301 TRF Tandem_Repeat 332639 332685 51 + . . scaffold1301 GLEAN promoter 346412 347411 1 + . ID=CGI_10027715; scaffold1301 GLEAN mRNA 347412 355447 1 + . ID=CGI_10027715; scaffold1301 TRF Tandem_Repeat 351076 351102 54 + . . scaffold1301 GLEAN promoter 354691 355690 1 + . ID=CGI_10027716; scaffold1301 GLEAN mRNA 355691 360635 1 + . ID=CGI_10027716; scaffold1301 GLEAN promoter 363752 364751 0.997872 + . ID=CGI_10027717; scaffold1301 GLEAN mRNA 364752 382399 0.997872 + . ID=CGI_10027717; scaffold1301 TRF Tandem_Repeat 393012 393048 74 + . . scaffold1301 TRF Tandem_Repeat 396426 396484 109 + . . scaffold1301 GLEAN promoter 405486 406485 0.999676 + . ID=CGI_10027719; scaffold1301 GLEAN mRNA 406486 407856 0.999676 + . ID=CGI_10027719; scaffold1301 GLEAN mRNA 411262 412434 0.999372 - . ID=CGI_10027720; scaffold1301 GLEAN promoter 412435 413434 0.999372 - . ID=CGI_10027720; scaffold1301 WUBlastX DNA_TcMar-ISRm1 413518 414441 131 + . . scaffold1301 WUBlastX DNA_TcMar-Ant1 413551 414330 157 + . . scaffold1301 WUBlastX LTR_Ngaro 419945 420001 26 + . . scaffold1301 WUBlastX LTR_Ngaro 419999 420088 30 + . . scaffold1301 WUBlastX LTR_Ngaro 420079 420363 36 + . . scaffold1301 WUBlastX LTR_Ngaro 420142 420363 62 + . . scaffold1301 WUBlastX LTR_Ngaro 420377 420811 73 + . . scaffold1301 WUBlastX LTR_Ngaro 420512 420814 100 + . . scaffold1301 TRF Tandem_Repeat 430244 430277 68 + . . scaffold1301 TRF Tandem_Repeat 431973 432011 78 + . . scaffold1301 TRF Tandem_Repeat 432119 432161 86 + . . scaffold1301 TRF Tandem_Repeat 432192 432252 88 + . . scaffold1301 GLEAN mRNA 434750 443288 0.999675 - . ID=CGI_10027721; scaffold1301 TRF Tandem_Repeat 436494 436531 76 + . . scaffold1301 TRF Tandem_Repeat 439885 440044 178 + . . scaffold1301 GLEAN promoter 443289 444288 0.999675 - . ID=CGI_10027721; scaffold1301 TRF Tandem_Repeat 445087 445132 51 + . . scaffold1301 TRF Tandem_Repeat 447765 448561 1058 + . . scaffold1301 TRF Tandem_Repeat 449349 449412 128 + . . scaffold1301 WUBlastX LINE_RTE-X 452603 452656 26 - . . scaffold1301 GLEAN promoter 455534 456533 0.999634 + . ID=CGI_10027722; scaffold1301 GLEAN mRNA 456534 481300 0.999634 + . ID=CGI_10027722; scaffold1301 TRF Tandem_Repeat 460845 461054 115 + . . scaffold1301 TRF Tandem_Repeat 460891 461810 1168 + . . scaffold1301 TRF Tandem_Repeat 460891 461810 1005 + . . scaffold1301 TRF Tandem_Repeat 470356 470598 179 + . . scaffold1301 TRF Tandem_Repeat 470470 471264 423 + . . scaffold1301 TRF Tandem_Repeat 470601 471343 728 + . . scaffold1301 TRF Tandem_Repeat 476017 476076 50 + . . scaffold1301 GLEAN mRNA 481829 492349 0.996819 - . ID=CGI_10027723; scaffold1301 GLEAN promoter 492350 493349 0.996819 - . ID=CGI_10027723; scaffold1301 GLEAN mRNA 492546 496204 1 - . ID=CGI_10027724; scaffold1301 GLEAN promoter 495191 496190 0.957283 + . ID=CGI_10027725; scaffold1301 GLEAN mRNA 496191 496412 0.957283 + . ID=CGI_10027725; scaffold1301 GLEAN promoter 496205 497204 1 - . ID=CGI_10027724; scaffold1301 GLEAN mRNA 511073 520925 0.99959 - . ID=CGI_10027726; scaffold1301 GLEAN promoter 520926 521925 0.99959 - . ID=CGI_10027726; scaffold1301 TRF Tandem_Repeat 525385 525424 80 + . . scaffold1301 TRF Tandem_Repeat 528540 528578 62 + . . scaffold1301 GLEAN mRNA 533171 534951 0.999675 - . ID=CGI_10027727; scaffold1301 GLEAN promoter 534952 535951 0.999675 - . ID=CGI_10027727; scaffold1301 GLEAN mRNA 535829 545342 0.835003 - . ID=CGI_10027728; scaffold1301 GLEAN promoter 545343 546342 0.835003 - . ID=CGI_10027728; scaffold1301 GLEAN promoter 546613 547612 1 + . ID=CGI_10027729; scaffold1301 TRF Tandem_Repeat 547225 547260 63 + . . scaffold1301 GLEAN mRNA 547613 549053 1 + . ID=CGI_10027729; scaffold1301 TRF Tandem_Repeat 549127 549177 95 + . . scaffold1301 GLEAN promoter 550241 551240 0.499723 + . ID=CGI_10027730; scaffold1301 GLEAN mRNA 551241 567597 0.499723 + . ID=CGI_10027730; scaffold1301 GLEAN mRNA 551272 564700 0.999415 - . ID=CGI_10027731; scaffold1301 TRF Tandem_Repeat 552313 553769 1095 + . . scaffold1301 TRF Tandem_Repeat 552313 553804 1115 + . . scaffold1301 TRF Tandem_Repeat 552983 553804 710 + . . scaffold1301 TRF Tandem_Repeat 564500 564536 67 + . . scaffold1301 GLEAN promoter 564701 565700 0.999415 - . ID=CGI_10027731; scaffold1301 GLEAN promoter 567249 568248 0.999624 + . ID=CGI_10027732; scaffold1301 GLEAN mRNA 568249 584232 0.999624 + . ID=CGI_10027732; scaffold1301 TRF Tandem_Repeat 570550 571374 1094 + . . scaffold1301 TRF Tandem_Repeat 572456 573232 1187 + . . scaffold1301 GLEAN promoter 600687 601686 1 + . ID=CGI_10027733; scaffold1301 GLEAN mRNA 601687 609674 1 + . ID=CGI_10027733; scaffold1301 GLEAN mRNA 610202 620973 0.794499 - . ID=CGI_10027734; scaffold1301 GLEAN promoter 618345 619344 0.288547 + . ID=CGI_10027735; scaffold1301 GLEAN mRNA 619345 669752 0.288547 + . ID=CGI_10027735; scaffold1301 GLEAN promoter 620974 621973 0.794499 - . ID=CGI_10027734; scaffold1301 TRF Tandem_Repeat 622496 622531 72 + . . scaffold1301 TRF Tandem_Repeat 623138 623180 86 + . . scaffold1301 WUBlastX LTR_Pao 624634 625536 786 - . . scaffold1301 WUBlastX LTR_Pao 625536 625952 252 - . . scaffold1301 WUBlastX LTR_Pao 625952 626311 36 - . . scaffold1301 WUBlastX LTR_Pao 625952 626239 197 - . . scaffold1301 WUBlastX LTR_Pao 627195 627569 130 - . . scaffold1301 WUBlastX LTR_Pao 627496 627915 221 - . . scaffold1301 WUBlastX LTR_Pao 627923 628651 250 - . . scaffold1301 WUBlastX LTR_Pao 627923 628330 279 - . . scaffold1301 WUBlastX LTR_Pao 628382 628711 22 - . . scaffold1301 TRF Tandem_Repeat 647161 647203 86 + . . scaffold1301 TRF Tandem_Repeat 648238 648301 128 + . . scaffold1301 TRF Tandem_Repeat 651725 651765 73 + . . scaffold1301 TRF Tandem_Repeat 658773 658838 114 + . . scaffold1301 TRF Tandem_Repeat 660344 661009 1000 + . . scaffold1301 WUBlastX LTR_Pao 669876 669959 31 + . . scaffold1301 WUBlastX LTR_Pao 669958 670098 46 + . . scaffold1301 TRF Tandem_Repeat 670730 671125 510 + . . scaffold1301 GLEAN mRNA 671565 673433 1 - . ID=CGI_10027736; scaffold1301 GLEAN promoter 673434 674433 1 - . ID=CGI_10027736; scaffold1301 TRF Tandem_Repeat 685553 685641 65 + . . scaffold1301 TRF Tandem_Repeat 685748 685843 129 + . . scaffold1301 TRF Tandem_Repeat 685783 685874 82 + . . scaffold1301 GLEAN promoter 686049 687048 0.639108 + . ID=CGI_10027738; scaffold1301 GLEAN mRNA 687007 701447 0.999676 - . ID=CGI_10027737; scaffold1301 GLEAN mRNA 687049 687273 0.639108 + . ID=CGI_10027738; scaffold1301 TRF Tandem_Repeat 694411 694675 408 + . . scaffold1301 GLEAN promoter 701448 702447 0.999676 - . ID=CGI_10027737; scaffold1301 WUBlastX LTR_Gypsy 706148 706642 40 - . . scaffold1301 WUBlastX LTR_Gypsy 706352 706738 89 - . . scaffold1301 WUBlastX LTR_Gypsy-Cigr 706364 706666 110 - . . scaffold1301 WUBlastX LTR_Pao 732105 733529 1064 + . . scaffold1301 WUBlastX LTR_Pao 733529 734164 153 + . . scaffold1301 WUBlastX LTR_Pao 733670 734218 486 + . . scaffold1301 WUBlastX LTR_Pao 733742 734347 235 + . . scaffold1301 WUBlastX DNA_Harbinger 734350 734742 51 + . . scaffold1301 WUBlastX DNA_Harbinger 734410 734745 127 + . . scaffold1301 WUBlastX DNA_Harbinger 735497 735610 122 + . . scaffold1301 WUBlastX DNA_Harbinger 735825 735941 42 + . . scaffold1301 WUBlastX DNA_Harbinger 736039 736248 126 + . . scaffold1301 WUBlastX DNA_Harbinger 736453 736710 21 + . . scaffold1301 WUBlastX DNA_Harbinger 736462 736557 42 + . . scaffold1301 WUBlastX DNA_Harbinger 736477 736677 45 + . . scaffold1301 WUBlastX LTR_Pao 739175 739666 381 + . . scaffold1301 WUBlastX LTR_Gypsy 740312 740527 57 + . . scaffold1301 WUBlastX LTR_Gypsy 740527 740757 132 + . . scaffold1301 WUBlastX LTR_Gypsy 740530 740820 74 + . . scaffold1301 WUBlastX LTR_Gypsy 740828 741010 49 + . . scaffold1301 WUBlastX LTR_Gypsy 741007 741270 23 + . . scaffold1301 WUBlastX LTR_Gypsy 741022 741213 43 + . . scaffold1301 GLEAN promoter 741863 742862 0.397055 + . ID=CGI_10027739; scaffold1301 GLEAN mRNA 742863 752603 0.397055 + . ID=CGI_10027739; scaffold1301 GLEAN promoter 752237 753236 1 + . ID=CGI_10027740; scaffold1301 GLEAN promoter 752553 753552 0.999662 + . ID=CGI_10027741; scaffold1301 GLEAN mRNA 753237 753551 1 + . ID=CGI_10027740; scaffold1301 GLEAN mRNA 753553 780508 0.999662 + . ID=CGI_10027741; scaffold1301 GLEAN mRNA 760639 763443 0.937844 - . ID=CGI_10027742; scaffold1301 GLEAN promoter 763444 764443 0.937844 - . ID=CGI_10027742; scaffold1301 TRF Tandem_Repeat 768409 768433 50 + . . scaffold1301 GLEAN promoter 780075 781074 0.518044 + . ID=CGI_10027743; scaffold1301 GLEAN mRNA 781075 819646 0.518044 + . ID=CGI_10027743; scaffold1301 TRF Tandem_Repeat 789188 789234 94 + . . scaffold1301 TRF Tandem_Repeat 789571 789619 98 + . . scaffold1301 TRF Tandem_Repeat 792548 792604 114 + . . scaffold1301 TRF Tandem_Repeat 792941 792989 98 + . . scaffold1301 WUBlastX DNA_MuDR 795598 795894 24 - . . scaffold1301 GLEAN mRNA 795655 798380 0.702584 - . ID=CGI_10027744; scaffold1301 WUBlastX DNA_MuDR 795999 796262 118 - . . scaffold1301 WUBlastX DNA_MuDR 796026 796304 100 - . . scaffold1301 WUBlastX DNA_MuDR 796035 796352 86 - . . scaffold1301 WUBlastX DNA_MuDR 796383 796631 110 - . . scaffold1301 GLEAN promoter 798381 799380 0.702584 - . ID=CGI_10027744; scaffold1301 GLEAN promoter 820116 821115 0.789172 + . ID=CGI_10027745; scaffold1301 GLEAN mRNA 821116 856956 0.789172 + . ID=CGI_10027745; scaffold1301 TRF Tandem_Repeat 838758 838787 51 + . . scaffold1301 TRF Tandem_Repeat 861610 861654 83 + . . scaffold1301 GLEAN promoter 888242 889241 1 + . ID=CGI_10027746; scaffold1301 GLEAN mRNA 889242 897797 1 + . ID=CGI_10027746; scaffold1301 TRF Tandem_Repeat 894610 895462 1463 + . . scaffold1301 GLEAN promoter 896807 897806 0.999981 + . ID=CGI_10027747; scaffold1301 GLEAN mRNA 897807 898472 0.999981 + . ID=CGI_10027747; scaffold1301 GLEAN promoter 907539 908538 0.997973 + . ID=CGI_10027748; scaffold1301 TRF Tandem_Repeat 907873 907929 114 + . . scaffold1301 GLEAN mRNA 908539 917281 0.997973 + . ID=CGI_10027748; scaffold1301 GLEAN mRNA 918295 923480 0.992511 - . ID=CGI_10027749; scaffold1301 TRF Tandem_Repeat 922775 922821 51 + . . scaffold1301 GLEAN promoter 923481 924480 0.992511 - . ID=CGI_10027749; scaffold1301 TRF Tandem_Repeat 925987 926075 117 + . . scaffold1301 GLEAN mRNA 930345 937523 0.59315 - . ID=CGI_10027750; scaffold1301 GLEAN promoter 937524 938523 0.59315 - . ID=CGI_10027750; scaffold1301 GLEAN promoter 939827 940826 0.536299 + . ID=CGI_10027751; scaffold1301 GLEAN mRNA 940827 961246 0.536299 + . ID=CGI_10027751; scaffold1301 TRF Tandem_Repeat 945397 945428 64 + . . scaffold1301 TRF Tandem_Repeat 945545 946312 976 + . . scaffold1301 TRF Tandem_Repeat 947076 947207 52 + . . scaffold1301 WUBlastX LINE_RTE-X 955501 956004 83 + . . scaffold1301 WUBlastX LINE_RTE-X 955591 956124 138 + . . scaffold1301 WUBlastX DNA_TcMar-Tigge 958039 958431 61 + . . scaffold1301 WUBlastX DNA_TcMar-Pogo 958126 959520 528 + . . scaffold1301 TRF Tandem_Repeat 963260 964105 698 + . . scaffold1301 GLEAN promoter 969800 970799 1 + . ID=CGI_10027752; scaffold1301 GLEAN mRNA 970800 975203 1 + . ID=CGI_10027752; scaffold1301 GLEAN promoter 975369 976368 0.983023 + . ID=CGI_10027753; scaffold1301 GLEAN mRNA 976369 976710 0.983023 + . ID=CGI_10027753; scaffold1301 GLEAN promoter 992675 993674 0.983022 + . ID=CGI_10027754; scaffold1301 GLEAN mRNA 993675 1000965 0.983022 + . ID=CGI_10027754; scaffold1301 GLEAN mRNA 998944 999763 1 - . ID=CGI_10027755; scaffold1301 GLEAN promoter 999764 1000763 1 - . ID=CGI_10027755; scaffold1301 GLEAN mRNA 1011964 1017083 0.999676 - . ID=CGI_10027756; scaffold1301 TRF Tandem_Repeat 1014472 1014534 103 + . . scaffold1301 GLEAN promoter 1017084 1018083 0.999676 - . ID=CGI_10027756; scaffold1301 GLEAN promoter 1017788 1018787 1 + . ID=CGI_10027757; scaffold1301 GLEAN mRNA 1018788 1022878 1 + . ID=CGI_10027757; scaffold1301 WUBlastX LINE_RTE-BovB 1030781 1031248 431 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1031164 1032126 117 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1031397 1032293 613 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1031893 1033008 612 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1032704 1033099 284 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1033056 1033190 49 + . . scaffold1301 WUBlastX LTR_Pao 1039372 1039626 23 - . . scaffold1301 WUBlastX LTR_Pao 1039417 1039620 71 - . . scaffold1301 WUBlastX LTR_Pao 1039608 1040237 418 - . . scaffold1301 WUBlastX LTR_Pao 1040240 1040962 332 - . . scaffold1301 WUBlastX LTR_Pao 1040456 1040974 347 - . . scaffold1301 WUBlastX LTR_Pao 1040971 1041615 307 - . . scaffold1301 WUBlastX LTR_Pao 1041190 1041732 204 - . . scaffold1301 WUBlastX LTR_Pao 1041190 1041618 319 - . . scaffold1301 WUBlastX LTR_Pao 1041629 1042045 169 - . . scaffold1301 WUBlastX LTR_Pao 1042011 1042268 48 - . . scaffold1301 WUBlastX LTR_Pao 1042011 1042229 58 - . . scaffold1301 WUBlastX LTR_Pao 1042277 1042573 146 - . . scaffold1301 WUBlastX LTR_Pao 1042563 1042781 81 - . . scaffold1301 WUBlastX LTR_Pao 1042620 1044575 707 - . . scaffold1301 WUBlastX LTR_Pao 1046085 1046471 113 - . . scaffold1301 WUBlastX LTR_Pao 1046151 1046471 154 - . . scaffold1301 WUBlastX LTR_Pao 1046470 1046697 175 - . . scaffold1301 WUBlastX LTR_Pao 1046476 1046739 112 - . . scaffold1301 TRF Tandem_Repeat 1049129 1049153 50 + . . scaffold1301 WUBlastX LINE_RTE-X 1049751 1051643 422 - . . scaffold1301 WUBlastX LINE_L1-Tx1 1051515 1051673 24 - . . scaffold1301 WUBlastX LINE_CR1 1051798 1051860 22 - . . scaffold1301 WUBlastX LINE_L1-Tx1 1051998 1052051 24 - . . scaffold1301 GLEAN mRNA 1056694 1093835 0.998606 - . ID=CGI_10027758; scaffold1301 TRF Tandem_Repeat 1064291 1064886 711 + . . scaffold1301 TRF Tandem_Repeat 1068159 1068188 60 + . . scaffold1301 TRF Tandem_Repeat 1090736 1090826 94 + . . scaffold1301 GLEAN promoter 1093836 1094835 0.998606 - . ID=CGI_10027758; scaffold1301 TRF Tandem_Repeat 1094306 1094381 143 + . . scaffold1301 GLEAN promoter 1096003 1097002 0.798682 + . ID=CGI_10027759; scaffold1301 GLEAN mRNA 1097003 1102907 0.798682 + . ID=CGI_10027759; scaffold1301 GLEAN promoter 1102156 1103155 0.924209 + . ID=CGI_10027760; scaffold1301 GLEAN mRNA 1103156 1109006 0.924209 + . ID=CGI_10027760; scaffold1301 GLEAN mRNA 1109104 1139468 0.999351 - . ID=CGI_10027761; scaffold1301 GLEAN promoter 1139469 1140468 0.999351 - . ID=CGI_10027761; scaffold1301 GLEAN promoter 1139816 1140815 0.99718 + . ID=CGI_10027762; scaffold1301 GLEAN mRNA 1140816 1161568 0.99718 + . ID=CGI_10027762; scaffold1301 GLEAN mRNA 1151846 1153561 0.481367 - . ID=CGI_10027763; scaffold1301 GLEAN promoter 1153562 1154561 0.481367 - . ID=CGI_10027763; scaffold1301 WUBlastX LINE_RTE-BovB 1165978 1166613 367 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1166619 1167188 236 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1167188 1167388 113 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1167362 1167874 113 + . . scaffold1301 WUBlastX LINE_RTE-BovB 1167461 1167874 145 + . . scaffold1301 GLEAN promoter 1175767 1176766 0.996929 + . ID=CGI_10027764; scaffold1301 GLEAN mRNA 1176767 1189559 0.996929 + . ID=CGI_10027764; scaffold1301 TRF Tandem_Repeat 1179237 1179509 501 + . . scaffold1301 GLEAN promoter 1199879 1200878 1 + . ID=CGI_10027765; scaffold1301 GLEAN mRNA 1200879 1217821 1 + . ID=CGI_10027765; scaffold1301 GLEAN promoter 1216842 1217841 1 + . ID=CGI_10027766; scaffold1301 GLEAN mRNA 1217842 1222716 1 + . ID=CGI_10027766; scaffold1301 TRF Tandem_Repeat 1223902 1224007 108 + . . scaffold1301 GLEAN promoter 1226474 1227473 0.999999 + . ID=CGI_10027767; scaffold1301 GLEAN mRNA 1227474 1241275 0.999999 + . ID=CGI_10027767; scaffold1301 TRF Tandem_Repeat 1239440 1239795 329 + . . scaffold1301 GLEAN mRNA 1240763 1263950 0.99974 - . ID=CGI_10027768; scaffold1301 WUBlastX LINE_RTE-X 1244540 1244743 22 + . . scaffold1301 WUBlastX LINE_RTE-X 1244633 1244743 24 + . . scaffold1301 WUBlastX LINE_RTE-X 1244766 1244945 60 + . . scaffold1301 WUBlastX LINE_RTE-X 1244784 1244984 51 + . . scaffold1301 WUBlastX LINE_RTE-X 1244784 1245041 33 + . . scaffold1301 TRF Tandem_Repeat 1246042 1247460 2015 + . . scaffold1301 TRF Tandem_Repeat 1249626 1249683 98 + . . scaffold1301 TRF Tandem_Repeat 1250427 1250696 438 + . . scaffold1301 TRF Tandem_Repeat 1258491 1258562 99 + . . scaffold1301 TRF Tandem_Repeat 1258816 1259221 231 + . . scaffold1301 GLEAN promoter 1263951 1264950 0.99974 - . ID=CGI_10027768; scaffold1301 GLEAN mRNA 1266215 1277849 0.999683 - . ID=CGI_10027769; scaffold1301 TRF Tandem_Repeat 1268661 1268785 196 + . . scaffold1301 GLEAN promoter 1277850 1278849 0.999683 - . ID=CGI_10027769; scaffold1301 GLEAN mRNA 1279712 1290172 1 - . ID=CGI_10027770; scaffold1301 TRF Tandem_Repeat 1281487 1281533 94 + . . scaffold1301 TRF Tandem_Repeat 1287927 1287971 90 + . . scaffold1301 GLEAN promoter 1290173 1291172 1 - . ID=CGI_10027770; scaffold1301 TRF Tandem_Repeat 1300414 1300483 113 + . . scaffold1301 TRF Tandem_Repeat 1319277 1319978 746 + . . scaffold1301 TRF Tandem_Repeat 1319582 1319707 51 + . . scaffold1301 GLEAN promoter 1327371 1328370 0.364156 + . ID=CGI_10027771; scaffold1301 GLEAN mRNA 1328371 1341967 0.364156 + . ID=CGI_10027771; scaffold1301 GLEAN mRNA 1343566 1354649 0.741745 - . ID=CGI_10027772; scaffold1301 GLEAN promoter 1354650 1355649 0.741745 - . ID=CGI_10027772; scaffold1301 TRF Tandem_Repeat 1361462 1362369 1042 + . . scaffold1301 TRF Tandem_Repeat 1362539 1362570 55 + . . scaffold1301 GLEAN promoter 1363305 1364304 0.591786 + . ID=CGI_10027773; scaffold1301 GLEAN mRNA 1364305 1366092 0.591786 + . ID=CGI_10027773; scaffold1301 WUBlastX LINE_RTE-X 1368711 1369073 163 + . . scaffold1301 WUBlastX LINE_RTE-X 1368778 1369509 275 + . . scaffold1301 WUBlastX LINE_L2 1369066 1369740 91 + . . scaffold1301 GLEAN mRNA 1370474 1376052 0.815066 - . ID=CGI_10027774; scaffold1301 TRF Tandem_Repeat 1370702 1370730 58 + . . scaffold1301 GLEAN promoter 1376053 1377052 0.815066 - . ID=CGI_10027774; scaffold1301 TRF Tandem_Repeat 1377772 1378698 1303 + . . scaffold1301 GLEAN mRNA 1392275 1396267 1 - . ID=CGI_10027775; scaffold1301 GLEAN promoter 1396021 1397020 1 + . ID=CGI_10027776; scaffold1301 GLEAN promoter 1396268 1397267 1 - . ID=CGI_10027775; scaffold1301 GLEAN mRNA 1397021 1397248 1 + . ID=CGI_10027776; scaffold1301 GLEAN mRNA 1398129 1411592 0.999949 - . ID=CGI_10027777; scaffold1301 TRF Tandem_Repeat 1402053 1402093 55 + . . scaffold1301 GLEAN promoter 1411593 1412592 0.999949 - . ID=CGI_10027777; scaffold1301 GLEAN mRNA 1413639 1414176 1 - . ID=CGI_10027778; scaffold1301 GLEAN promoter 1414177 1415176 1 - . ID=CGI_10027778; scaffold1301 TRF Tandem_Repeat 1414273 1414324 104 + . . scaffold1301 TRF Tandem_Repeat 1414326 1414359 68 + . . scaffold1301 GLEAN promoter 1439237 1440236 0.999995 + . ID=CGI_10027779; scaffold1301 GLEAN mRNA 1440237 1444519 0.999995 + . ID=CGI_10027779; scaffold1301 WUBlastX LINE_L1-Tx1 1445582 1446265 78 - . . scaffold1301 WUBlastX LINE_L1-Tx1 1445696 1446265 106 - . . scaffold1301 WUBlastX LINE_L1-Tx1 1446256 1446444 85 - . . scaffold1301 GLEAN promoter 1457727 1458726 0.918032 + . ID=CGI_10027780; scaffold1301 GLEAN mRNA 1458727 1459971 0.918032 + . ID=CGI_10027780; scaffold1301 GLEAN mRNA 1461271 1463898 1 - . ID=CGI_10027781; scaffold1301 GLEAN promoter 1463899 1464898 1 - . ID=CGI_10027781; scaffold1301 TRF Tandem_Repeat 1465629 1465717 178 + . . scaffold1301 GLEAN mRNA 1483888 1485650 0.9992 - . ID=CGI_10027782; scaffold1301 GLEAN promoter 1485651 1486650 0.9992 - . ID=CGI_10027782; scaffold1301 TRF Tandem_Repeat 1515561 1515630 70 + . . scaffold1301 TRF Tandem_Repeat 1524574 1524604 62 + . . scaffold1301 TRF Tandem_Repeat 1525114 1526457 1969 + . . scaffold1301 TRF Tandem_Repeat 1533043 1534400 1685 + . . scaffold1301 TRF Tandem_Repeat 1533043 1534440 1700 + . . scaffold1301 TRF Tandem_Repeat 1540831 1541837 1553 + . . scaffold1301 GLEAN mRNA 1544107 1545360 0.998698 - . ID=CGI_10027783; scaffold1301 GLEAN promoter 1545361 1546360 0.998698 - . ID=CGI_10027783; scaffold1301 GLEAN promoter 1548196 1549195 0.817436 + . ID=CGI_10027785; scaffold1301 TRF Tandem_Repeat 1548524 1548729 331 + . . scaffold1301 GLEAN mRNA 1549196 1549889 0.817436 + . ID=CGI_10027785; scaffold1301 GLEAN mRNA 1553597 1558778 0.877812 - . ID=CGI_10027786; scaffold1301 GLEAN promoter 1558779 1559340 0.877812 - . ID=CGI_10027786; scaffold1302 GLEAN mRNA 861 12204 0.999405 - . ID=CGI_10001203; scaffold1302 GLEAN promoter 12205 13204 0.999405 - . ID=CGI_10001203; scaffold1303 GLEAN mRNA 3931 8208 0.69447 - . ID=CGI_10000654; scaffold1303 GLEAN promoter 8209 8221 0.69447 - . ID=CGI_10000654; scaffold1304 TRF Tandem_Repeat 4382 4489 121 + . . scaffold1304 GLEAN mRNA 5892 16388 0.86377 - . ID=CGI_10003861; scaffold1304 GLEAN promoter 16389 17388 0.86377 - . ID=CGI_10003861; scaffold1304 GLEAN promoter 17393 18392 1 + . ID=CGI_10003862; scaffold1304 GLEAN mRNA 18393 35543 1 + . ID=CGI_10003862; scaffold1304 TRF Tandem_Repeat 31062 31323 226 + . . scaffold1304 WUBlastX LINE_L1 31695 31904 39 - . . scaffold1304 GLEAN mRNA 37105 42236 0.999356 - . ID=CGI_10003863; scaffold1304 TRF Tandem_Repeat 39140 39226 65 + . . scaffold1304 TRF Tandem_Repeat 39388 39475 50 + . . scaffold1304 GLEAN promoter 41774 42773 1 + . ID=CGI_10003864; scaffold1304 GLEAN promoter 42237 43236 0.999356 - . ID=CGI_10003863; scaffold1304 GLEAN mRNA 42774 50762 1 + . ID=CGI_10003864; scaffold1304 TRF Tandem_Repeat 48378 48430 90 + . . scaffold1304 GLEAN mRNA 52194 54779 1 - . ID=CGI_10003865; scaffold1304 GLEAN promoter 54780 55779 1 - . ID=CGI_10003865; scaffold1304 GLEAN mRNA 66761 80457 0.814164 - . ID=CGI_10003866; scaffold1304 TRF Tandem_Repeat 69976 70029 108 + . . scaffold1304 TRF Tandem_Repeat 74392 74422 62 + . . scaffold1304 TRF Tandem_Repeat 74420 74517 160 + . . scaffold1304 GLEAN promoter 80458 81457 0.814164 - . ID=CGI_10003866; scaffold1304 TRF Tandem_Repeat 80775 80813 78 + . . scaffold1305 GLEAN promoter 1439 2438 0.429909 + . ID=CGI_10001752; scaffold1305 GLEAN mRNA 2439 3671 0.429909 + . ID=CGI_10001752; scaffold1305 GLEAN mRNA 4553 5515 1 - . ID=CGI_10001753; scaffold1305 GLEAN promoter 5516 6515 1 - . ID=CGI_10001753; scaffold1305 GLEAN mRNA 12044 14374 0.999068 - . ID=CGI_10001755; scaffold1305 GLEAN promoter 14375 15374 0.999068 - . ID=CGI_10001755; scaffold1305 GLEAN promoter 18988 19987 0.57326 + . ID=CGI_10001757; scaffold1305 GLEAN mRNA 19988 21247 0.57326 + . ID=CGI_10001757; scaffold1306 GLEAN mRNA 5977 6798 0.998501 - . ID=CGI_10001894; scaffold1306 GLEAN promoter 6799 7798 0.998501 - . ID=CGI_10001894; scaffold1306 GLEAN promoter 16971 17970 0.997408 + . ID=CGI_10001897; scaffold1306 GLEAN mRNA 17971 19299 0.997408 + . ID=CGI_10001897; scaffold1306 GLEAN mRNA 21725 22195 0.734434 - . ID=CGI_10001899; scaffold1306 GLEAN promoter 22196 23195 0.734434 - . ID=CGI_10001899; scaffold1306 GLEAN mRNA 23223 24263 0.999982 - . ID=CGI_10001900; scaffold1306 GLEAN promoter 24264 25263 0.999982 - . ID=CGI_10001900; scaffold1306 GLEAN mRNA 33886 34197 0.999039 - . ID=CGI_10001908; scaffold1306 GLEAN promoter 34198 34669 0.999039 - . ID=CGI_10001908; scaffold1306 GLEAN mRNA 34223 34567 0.69447 - . ID=CGI_10001909; scaffold1306 GLEAN promoter 34568 34669 0.69447 - . ID=CGI_10001909; scaffold1307 GLEAN mRNA 1769 5065 0.999973 - . ID=CGI_10023738; scaffold1307 GLEAN promoter 5066 6065 0.999973 - . ID=CGI_10023738; scaffold1307 GLEAN promoter 5251 6250 0.745308 + . ID=CGI_10023739; scaffold1307 GLEAN mRNA 6251 45653 0.745308 + . ID=CGI_10023739; scaffold1307 WUBlastX DNA_Kolobok-IS4 9310 10338 250 + . . scaffold1307 WUBlastX DNA_IS4EU 9655 10338 353 + . . scaffold1307 WUBlastX DNA_IS4EU 10951 11217 169 + . . scaffold1307 WUBlastX DNA_IS4EU 11163 11291 31 + . . scaffold1307 WUBlastX DNA_IS4EU 11612 11806 31 - . . scaffold1307 WUBlastX LINE_RTE-X 17943 18389 28 - . . scaffold1307 WUBlastX LINE_RTE-X 18069 18356 93 - . . scaffold1307 WUBlastX LINE_RTE-X 18087 18407 49 - . . scaffold1307 WUBlastX LINE_RTE-X 18320 18478 23 - . . scaffold1307 WUBlastX LTR_Ngaro 45680 46087 141 - . . scaffold1307 WUBlastX LTR_Ngaro 46087 47055 359 - . . scaffold1307 WUBlastX LTR_Ngaro 47075 47629 312 - . . scaffold1307 GLEAN promoter 53325 54324 1 + . ID=CGI_10023740; scaffold1307 GLEAN mRNA 54325 58017 1 + . ID=CGI_10023740; scaffold1307 GLEAN mRNA 60748 64783 1 - . ID=CGI_10023741; scaffold1307 GLEAN promoter 64784 65783 1 - . ID=CGI_10023741; scaffold1307 TRF Tandem_Repeat 65806 65882 145 + . . scaffold1307 GLEAN mRNA 69826 75026 0.889859 - . ID=CGI_10023742; scaffold1307 GLEAN promoter 75027 76026 0.889859 - . ID=CGI_10023742; scaffold1307 GLEAN promoter 76743 77742 0.992313 + . ID=CGI_10023743; scaffold1307 GLEAN mRNA 77743 81648 0.992313 + . ID=CGI_10023743; scaffold1307 GLEAN promoter 84545 85544 0.899957 + . ID=CGI_10023744; scaffold1307 GLEAN mRNA 85545 98014 0.899957 + . ID=CGI_10023744; scaffold1307 TRF Tandem_Repeat 101264 101304 55 + . . scaffold1307 TRF Tandem_Repeat 101464 101504 55 + . . scaffold1307 WUBlastX LINE_RTE-BovB 103534 104346 135 + . . scaffold1307 WUBlastX LINE_RTE-BovB 103705 105054 324 + . . scaffold1307 WUBlastX LINE_RTE-BovB 104609 105244 249 + . . scaffold1307 WUBlastX LINE_RTE-BovB 105247 105510 142 + . . scaffold1307 WUBlastX LINE_RTE-BovB 105256 105570 22 + . . scaffold1307 GLEAN promoter 115155 116154 0.57245 + . ID=CGI_10023745; scaffold1307 GLEAN mRNA 116155 132773 0.57245 + . ID=CGI_10023745; scaffold1307 TRF Tandem_Repeat 119339 119427 178 + . . scaffold1307 TRF Tandem_Repeat 122860 123000 99 + . . scaffold1307 GLEAN mRNA 134174 152289 0.801867 - . ID=CGI_10023746; scaffold1307 TRF Tandem_Repeat 136397 136429 50 + . . scaffold1307 TRF Tandem_Repeat 137638 137686 71 + . . scaffold1307 GLEAN promoter 139182 140181 0.5 + . ID=CGI_10023747; scaffold1307 TRF Tandem_Repeat 140142 140704 955 + . . scaffold1307 GLEAN mRNA 140182 140760 0.5 + . ID=CGI_10023747; scaffold1307 TRF Tandem_Repeat 140970 141052 123 + . . scaffold1307 GLEAN promoter 152290 153289 0.801867 - . ID=CGI_10023746; scaffold1307 TRF Tandem_Repeat 153259 153329 133 + . . scaffold1307 TRF Tandem_Repeat 154150 154299 221 + . . scaffold1307 GLEAN promoter 158373 159372 0.999637 + . ID=CGI_10023748; scaffold1307 GLEAN mRNA 159373 174883 0.999637 + . ID=CGI_10023748; scaffold1307 TRF Tandem_Repeat 162793 163072 274 + . . scaffold1307 TRF Tandem_Repeat 162855 162978 88 + . . scaffold1307 TRF Tandem_Repeat 163902 163995 134 + . . scaffold1307 TRF Tandem_Repeat 165512 165605 152 + . . scaffold1307 TRF Tandem_Repeat 177834 177877 61 + . . scaffold1307 WUBlastX LINE_L1-Tx1 184781 185389 36 - . . scaffold1307 WUBlastX LINE_L1-Tx1 184859 185260 65 - . . scaffold1307 WUBlastX LINE_L1 188721 188837 22 - . . scaffold1307 WUBlastX LINE_L1 188754 188795 22 - . . scaffold1307 WUBlastX LINE_L1-Tx1 188771 188908 31 - . . scaffold1307 WUBlastX LINE_L1 188807 188917 41 - . . scaffold1307 WUBlastX LINE_L1-Tx1 189082 189210 22 - . . scaffold1307 WUBlastX LINE_L1 189096 189137 23 - . . scaffold1307 WUBlastX LINE_L1-Tx1 189175 189351 23 - . . scaffold1307 WUBlastX LINE_L1 189285 190229 29 - . . scaffold1307 WUBlastX LINE_L1 189476 189781 33 - . . scaffold1307 WUBlastX LINE_L1 189539 189781 51 - . . scaffold1307 WUBlastX LINE_L1 189578 189784 55 - . . scaffold1307 WUBlastX LINE_L1 189614 189805 69 - . . scaffold1307 WUBlastX LINE_L1 189656 189784 97 - . . scaffold1307 WUBlastX LINE_L1-Tx1 189786 190466 200 - . . scaffold1307 WUBlastX LINE_L1-Tx1 189786 190229 357 - . . scaffold1307 WUBlastX LINE_L1-Tx1 190460 190636 113 - . . scaffold1307 WUBlastX LINE_L2 192081 192758 189 - . . scaffold1307 WUBlastX LINE_L1 193830 194933 80 - . . scaffold1307 WUBlastX LINE_L1-Tx1 194142 195566 538 - . . scaffold1307 WUBlastX LINE_L1-Tx1 195542 195709 21 - . . scaffold1307 WUBlastX LINE_L1-Tx1 195596 195835 99 - . . scaffold1307 WUBlastX LINE_L1-Tx1 195853 196041 65 - . . scaffold1307 WUBlastX LINE_L1-Tx1 195993 196358 79 - . . scaffold1307 WUBlastX LINE_L1-Tx1 196029 196328 88 - . . scaffold1307 WUBlastX LINE_L1 196032 196439 64 - . . scaffold1307 WUBlastX LINE_L2 197508 197867 46 - . . scaffold1307 TRF Tandem_Repeat 206313 206556 305 + . . scaffold1307 WUBlastX DNA_hAT-Tip100 206653 207174 68 + . . scaffold1307 WUBlastX DNA_hAT-Tip100 207795 208229 98 + . . scaffold1307 WUBlastX DNA_hAT-Tip100 207876 208379 86 + . . scaffold1307 WUBlastX DNA_hAT-Tip100 207876 208199 136 + . . scaffold1307 WUBlastX DNA_hAT-Tip100 207876 208277 113 + . . scaffold1307 WUBlastX LTR_Pao 218237 219460 1352 + . . scaffold1307 GLEAN mRNA 220986 221504 0.999005 - . ID=CGI_10023749; scaffold1307 GLEAN promoter 221505 222504 0.999005 - . ID=CGI_10023749; scaffold1307 TRF Tandem_Repeat 230203 230236 68 + . . scaffold1307 WUBlastX LTR_Gypsy 240626 240703 38 + . . scaffold1307 WUBlastX LTR_Gypsy 240693 240812 62 + . . scaffold1307 WUBlastX LTR_Gypsy 240729 240836 73 + . . scaffold1307 TRF Tandem_Repeat 240889 240936 96 + . . scaffold1307 GLEAN mRNA 259966 260229 1 - . ID=CGI_10023750; scaffold1307 GLEAN promoter 260230 261229 1 - . ID=CGI_10023750; scaffold1307 WUBlastX DNA_Harbinger 260992 261384 62 - . . scaffold1307 WUBlastX DNA_Harbinger 261139 261429 144 - . . scaffold1307 GLEAN promoter 297729 298728 0.998321 + . ID=CGI_10023751; scaffold1307 GLEAN mRNA 298729 299019 0.998321 + . ID=CGI_10023751; scaffold1307 WUBlastX LTR_Pao 299943 300497 133 + . . scaffold1307 WUBlastX LTR_Pao 300127 300384 163 + . . scaffold1307 WUBlastX LTR_Pao 300565 300750 35 + . . scaffold1307 WUBlastX DNA_Maverick 319705 320217 227 - . . scaffold1307 WUBlastX DNA_Maverick 320083 320250 53 - . . scaffold1307 WUBlastX DNA_Maverick 320268 320591 48 - . . scaffold1307 WUBlastX DNA_Maverick 320798 321076 59 - . . scaffold1307 WUBlastX DNA_Maverick 320861 321097 66 - . . scaffold1307 GLEAN mRNA 321870 328584 0.400019 - . ID=CGI_10023752; scaffold1307 GLEAN promoter 322239 323238 0.901731 + . ID=CGI_10023754; scaffold1307 GLEAN mRNA 323239 332767 0.901731 + . ID=CGI_10023754; scaffold1307 GLEAN promoter 328585 329584 0.400019 - . ID=CGI_10023752; scaffold1307 WUBlastX LTR_Gypsy 330696 331520 483 + . . scaffold1307 WUBlastX LTR_Gypsy 331469 331624 45 + . . scaffold1307 WUBlastX LTR_Gypsy 331562 332701 1111 + . . scaffold1307 WUBlastX LTR_Gypsy-Cigr 331868 332917 356 + . . scaffold1307 GLEAN promoter 332505 333504 0.908151 + . ID=CGI_10023755; scaffold1307 WUBlastX LTR_Gypsy 332873 333007 80 + . . scaffold1307 GLEAN mRNA 333505 334659 0.908151 + . ID=CGI_10023755; scaffold1307 WUBlastX DNA_IS4EU 336381 336572 56 + . . scaffold1307 WUBlastX LTR_Gypsy 341352 342020 23 + . . scaffold1307 WUBlastX LTR_Gypsy 341457 342080 61 + . . scaffold1307 WUBlastX LTR_Gypsy 341592 342041 72 + . . scaffold1307 WUBlastX LTR_Gypsy 341712 342266 54 + . . scaffold1307 WUBlastX LTR_Gypsy 341721 342140 68 + . . scaffold1307 TRF Tandem_Repeat 342327 342406 72 + . . scaffold1307 WUBlastX LTR_Gypsy 342864 343247 32 + . . scaffold1307 WUBlastX LTR_Gypsy? 343492 344172 34 + . . scaffold1307 TRF Tandem_Repeat 344619 344663 83 + . . scaffold1307 TRF Tandem_Repeat 348085 348118 68 + . . scaffold1307 WUBlastX DNA_hAT-hATw 348542 348853 21 + . . scaffold1307 WUBlastX DNA_hAT-hATw 348757 349440 78 + . . scaffold1307 WUBlastX DNA_hAT-hATw 349674 350750 79 + . . scaffold1307 WUBlastX DNA_hAT-hATw 350124 350750 116 + . . scaffold1307 TRF Tandem_Repeat 370212 370569 494 + . . scaffold1307 TRF Tandem_Repeat 370249 370569 435 + . . scaffold1307 GLEAN mRNA 370679 372388 0.998587 - . ID=CGI_10023756; scaffold1307 GLEAN promoter 372389 373388 0.998587 - . ID=CGI_10023756; scaffold1307 TRF Tandem_Repeat 376305 376349 76 + . . scaffold1307 GLEAN promoter 382094 383093 0.999921 + . ID=CGI_10023757; scaffold1307 GLEAN mRNA 383094 397266 0.999921 + . ID=CGI_10023757; scaffold1307 GLEAN mRNA 392687 427992 0.966019 - . ID=CGI_10023758; scaffold1307 TRF Tandem_Repeat 406124 406910 1259 + . . scaffold1307 TRF Tandem_Repeat 416375 416511 97 + . . scaffold1307 TRF Tandem_Repeat 416375 416511 118 + . . scaffold1307 TRF Tandem_Repeat 421018 421044 54 + . . scaffold1307 GLEAN promoter 425520 426519 0.999027 + . ID=CGI_10023759; scaffold1307 GLEAN mRNA 426520 439623 0.999027 + . ID=CGI_10023759; scaffold1307 GLEAN promoter 427993 428992 0.966019 - . ID=CGI_10023758; scaffold1307 WUBlastX LINE_RTE-X 437551 437934 77 + . . scaffold1307 GLEAN mRNA 442852 444961 1 - . ID=CGI_10023760; scaffold1307 GLEAN promoter 444962 445961 1 - . ID=CGI_10023760; scaffold1307 TRF Tandem_Repeat 446496 446540 74 + . . scaffold1307 WUBlastX LINE_RTE-X 447774 447935 107 - . . scaffold1307 GLEAN mRNA 450719 462062 0.999431 - . ID=CGI_10023761; scaffold1307 WUBlastX DNA_TcMar-Tc1 458420 458935 138 - . . scaffold1307 GLEAN promoter 462063 463062 0.999431 - . ID=CGI_10023761; scaffold1307 GLEAN mRNA 463678 469349 0.99999 - . ID=CGI_10023762; scaffold1307 GLEAN promoter 469350 470349 0.99999 - . ID=CGI_10023762; scaffold1307 TRF Tandem_Repeat 469386 470571 1807 + . . scaffold1307 GLEAN mRNA 470749 476858 0.998805 - . ID=CGI_10023763; scaffold1307 TRF Tandem_Repeat 471697 472312 1126 + . . scaffold1307 GLEAN promoter 476859 477858 0.998805 - . ID=CGI_10023763; scaffold1307 TRF Tandem_Repeat 478733 478787 110 + . . scaffold1307 TRF Tandem_Repeat 479674 479724 77 + . . scaffold1307 GLEAN promoter 492275 493274 0.920529 + . ID=CGI_10023764; scaffold1307 GLEAN mRNA 493275 499936 0.920529 + . ID=CGI_10023764; scaffold1307 TRF Tandem_Repeat 493736 493784 98 + . . scaffold1307 TRF Tandem_Repeat 495475 495500 52 + . . scaffold1307 TRF Tandem_Repeat 502235 502287 56 + . . scaffold1307 TRF Tandem_Repeat 506289 506321 66 + . . scaffold1307 GLEAN mRNA 510351 524698 0.366202 - . ID=CGI_10023765; scaffold1307 TRF Tandem_Repeat 511930 511972 86 + . . scaffold1307 TRF Tandem_Repeat 519828 519996 126 + . . scaffold1307 TRF Tandem_Repeat 524271 524563 435 + . . scaffold1307 GLEAN promoter 524699 525698 0.366202 - . ID=CGI_10023765; scaffold1307 GLEAN mRNA 525050 526837 0.672133 - . ID=CGI_10023766; scaffold1307 GLEAN promoter 526838 527837 0.672133 - . ID=CGI_10023766; scaffold1307 GLEAN mRNA 529288 552602 0.774608 - . ID=CGI_10023767; scaffold1307 TRF Tandem_Repeat 532218 532280 126 + . . scaffold1307 TRF Tandem_Repeat 549362 550819 2281 + . . scaffold1307 TRF Tandem_Repeat 549362 550819 2320 + . . scaffold1307 TRF Tandem_Repeat 550850 550909 84 + . . scaffold1307 GLEAN promoter 552603 553602 0.774608 - . ID=CGI_10023767; scaffold1307 GLEAN mRNA 552798 568629 0.889941 - . ID=CGI_10023768; scaffold1307 GLEAN promoter 568630 569629 0.889941 - . ID=CGI_10023768; scaffold1307 TRF Tandem_Repeat 571297 571330 59 + . . scaffold1307 TRF Tandem_Repeat 574756 574791 72 + . . scaffold1307 TRF Tandem_Repeat 576236 576334 144 + . . scaffold1307 TRF Tandem_Repeat 576881 576999 168 + . . scaffold1307 WUBlastX LINE_CR1 577023 577403 41 + . . scaffold1307 WUBlastX LINE_CR1 577119 577409 67 + . . scaffold1307 WUBlastX LINE_CR1 577119 577466 25 + . . scaffold1307 WUBlastX LINE_L2 578158 578271 20 + . . scaffold1307 WUBlastX LINE_CR1-L2 578176 578346 50 + . . scaffold1307 WUBlastX LINE_CR1 578188 578397 43 + . . scaffold1307 WUBlastX LINE_L2 578188 578484 24 + . . scaffold1307 WUBlastX LINE_L2 578602 578748 49 + . . scaffold1307 WUBlastX LINE_CR1-L2 578626 578877 26 + . . scaffold1307 WUBlastX LTR_DIRS 581280 582140 266 - . . scaffold1307 WUBlastX LTR_DIRS 582139 582582 201 - . . scaffold1307 WUBlastX LTR_DIRS 582211 582705 274 - . . scaffold1307 WUBlastX LTR_DIRS 582669 583709 110 - . . scaffold1307 WUBlastX LTR_DIRS 583578 584033 103 - . . scaffold1307 WUBlastX LTR_DIRS 583578 584117 42 - . . scaffold1307 WUBlastX DNA_TcMar-Tc1 584955 585026 48 - . . scaffold1307 WUBlastX DNA_TcMar-Tc1 585017 585700 185 - . . scaffold1307 WUBlastX DNA_TcMar-Tc1 585041 585550 209 - . . scaffold1307 GLEAN promoter 585550 586549 0.992394 + . ID=CGI_10023769; scaffold1307 WUBlastX DNA_TcMar-Tc1 585651 585824 24 - . . scaffold1307 WUBlastX DNA_TcMar-Tc1 585914 586153 33 - . . scaffold1307 WUBlastX DNA_TcMar-Tc1 585974 586153 73 - . . scaffold1307 TRF Tandem_Repeat 586404 586430 54 + . . scaffold1307 GLEAN mRNA 586550 596673 0.992394 + . ID=CGI_10023769; scaffold1307 TRF Tandem_Repeat 589121 589158 76 + . . scaffold1307 WUBlastX LTR_Gypsy 592071 592307 83 + . . scaffold1307 WUBlastX LTR_Gypsy 592107 592385 67 + . . scaffold1307 WUBlastX LTR_Gypsy 592125 592307 94 + . . scaffold1307 WUBlastX LTR_Gypsy 592391 592444 22 + . . scaffold1307 TRF Tandem_Repeat 594544 595954 2056 + . . scaffold1307 TRF Tandem_Repeat 596033 596261 133 + . . scaffold1307 GLEAN promoter 597092 598091 0.723884 + . ID=CGI_10023770; scaffold1307 GLEAN mRNA 598092 607745 0.723884 + . ID=CGI_10023770; scaffold1307 TRF Tandem_Repeat 600488 600551 103 + . . scaffold1307 TRF Tandem_Repeat 601643 601677 70 + . . scaffold1307 TRF Tandem_Repeat 602217 602270 108 + . . scaffold1307 GLEAN mRNA 608358 608865 0.648525 - . ID=CGI_10023771; scaffold1307 GLEAN promoter 608866 609865 0.648525 - . ID=CGI_10023771; scaffold1307 TRF Tandem_Repeat 609970 610794 1125 + . . scaffold1307 GLEAN promoter 611866 612865 1 + . ID=CGI_10023772; scaffold1307 GLEAN mRNA 612866 616246 1 + . ID=CGI_10023772; scaffold1307 GLEAN mRNA 617872 618285 0.986676 - . ID=CGI_10023773; scaffold1307 GLEAN promoter 618286 619285 0.986676 - . ID=CGI_10023773; scaffold1307 GLEAN mRNA 618804 623796 1 - . ID=CGI_10023774; scaffold1307 TRF Tandem_Repeat 621930 622861 1047 + . . scaffold1307 GLEAN promoter 623797 624796 1 - . ID=CGI_10023774; scaffold1307 GLEAN mRNA 625481 640911 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 629897 630145 471 + . . scaffold1307 TRF Tandem_Repeat 631695 633196 2337 + . . scaffold1307 TRF Tandem_Repeat 631695 633196 2314 + . . scaffold1307 WUBlastX DNA_hAT-Blackja 634173 634424 66 - . . scaffold1307 TRF Tandem_Repeat 639084 639143 120 + . . scaffold1307 TRF Tandem_Repeat 639141 639179 53 + . . scaffold1307 TRF Tandem_Repeat 639443 639482 80 + . . scaffold1307 TRF Tandem_Repeat 639955 640002 96 + . . scaffold1307 GLEAN promoter 640912 641911 0.991393 - . ID=CGI_10023775; scaffold1307 TRF Tandem_Repeat 643837 643873 74 + . . scaffold1307 GLEAN promoter 645819 646818 0.999676 + . ID=CGI_10023776; scaffold1307 GLEAN mRNA 646819 654061 0.999676 + . ID=CGI_10023776; scaffold1307 TRF Tandem_Repeat 647625 647962 359 + . . scaffold1307 TRF Tandem_Repeat 652803 653060 293 + . . scaffold1307 TRF Tandem_Repeat 654310 654604 260 + . . scaffold1307 GLEAN mRNA 659024 661786 1 - . ID=CGI_10023777; scaffold1307 GLEAN promoter 661787 662786 1 - . ID=CGI_10023777; scaffold1307 TRF Tandem_Repeat 662428 662499 144 + . . scaffold1307 GLEAN promoter 663728 664727 0.999976 + . ID=CGI_10023778; scaffold1307 GLEAN mRNA 664728 669185 0.999976 + . ID=CGI_10023778; scaffold1307 GLEAN promoter 670865 671864 0.999372 + . ID=CGI_10023780; scaffold1307 GLEAN mRNA 671090 671746 0.997345 - . ID=CGI_10023779; scaffold1307 GLEAN promoter 671747 672746 0.997345 - . ID=CGI_10023779; scaffold1307 GLEAN mRNA 671865 672056 0.999372 + . ID=CGI_10023780; scaffold1307 WUBlastX DNA_TcMar-Tc1 672782 673657 227 - . . scaffold1307 WUBlastX DNA_TcMar-Tc1 672782 673471 393 - . . scaffold1307 GLEAN promoter 676887 677886 1 + . ID=CGI_10023781; scaffold1307 GLEAN mRNA 677887 683119 1 + . ID=CGI_10023781; scaffold1307 TRF Tandem_Repeat 678449 678701 158 + . . scaffold1307 TRF Tandem_Repeat 678721 678897 216 + . . scaffold1307 GLEAN mRNA 685134 691917 0.996413 - . ID=CGI_10023782; scaffold1307 GLEAN promoter 691918 692917 0.996413 - . ID=CGI_10023782; scaffold1307 TRF Tandem_Repeat 693911 694047 117 + . . scaffold1307 TRF Tandem_Repeat 693911 694047 117 + . . scaffold1307 GLEAN mRNA 696080 696653 0.998363 - . ID=CGI_10023783; scaffold1307 GLEAN promoter 696654 697653 0.998363 - . ID=CGI_10023783; scaffold1307 TRF Tandem_Repeat 698387 698423 74 + . . scaffold1307 TRF Tandem_Repeat 703000 703077 133 + . . scaffold1307 TRF Tandem_Repeat 704642 704907 266 + . . scaffold1307 GLEAN mRNA 707716 709349 0.999347 - . ID=CGI_10023784; scaffold1307 GLEAN promoter 709350 710349 0.999347 - . ID=CGI_10023784; scaffold1307 TRF Tandem_Repeat 709510 709547 76 + . . scaffold1307 WUBlastX DNA_TcMar-Tc1 711513 711740 62 + . . scaffold1307 WUBlastX DNA_TcMar-Marin 713353 713556 55 + . . scaffold1307 WUBlastX DNA_TcMar-Tc1 713519 713692 70 + . . scaffold1307 WUBlastX DNA_TcMar-Tc1 713543 713875 33 + . . scaffold1307 TRF Tandem_Repeat 716186 716296 156 + . . scaffold1307 TRF Tandem_Repeat 716186 716296 124 + . . scaffold1307 TRF Tandem_Repeat 717053 717107 110 + . . scaffold1307 TRF Tandem_Repeat 718290 718391 111 + . . scaffold1307 TRF Tandem_Repeat 718290 718391 111 + . . scaffold1307 TRF Tandem_Repeat 718434 718481 96 + . . scaffold1307 GLEAN mRNA 723980 730961 0.855967 - . ID=CGI_10023785; scaffold1307 GLEAN promoter 730962 731961 0.855967 - . ID=CGI_10023785; scaffold1307 TRF Tandem_Repeat 732791 732842 104 + . . scaffold1307 TRF Tandem_Repeat 735460 735489 53 + . . scaffold1307 GLEAN promoter 737225 738224 0.961099 + . ID=CGI_10023786; scaffold1307 GLEAN mRNA 738225 740963 0.961099 + . ID=CGI_10023786; scaffold1307 TRF Tandem_Repeat 743816 743863 96 + . . scaffold1307 TRF Tandem_Repeat 754978 755941 1068 + . . scaffold1307 TRF Tandem_Repeat 754978 755941 1218 + . . scaffold1307 GLEAN promoter 758063 759062 0.958848 + . ID=CGI_10023787; scaffold1307 GLEAN mRNA 759063 764059 0.958848 + . ID=CGI_10023787; scaffold1307 GLEAN promoter 766661 767660 0.990898 + . ID=CGI_10023788; scaffold1307 GLEAN mRNA 767661 771039 0.990898 + . ID=CGI_10023788; scaffold1307 GLEAN mRNA 771036 773123 0.988374 - . ID=CGI_10023789; scaffold1307 GLEAN promoter 773124 774123 0.988374 - . ID=CGI_10023789; scaffold1307 GLEAN mRNA 777509 778051 0.988353 - . ID=CGI_10023790; scaffold1307 GLEAN promoter 778052 779051 0.988353 - . ID=CGI_10023790; scaffold1307 WUBlastX LINE_L1 788406 788597 58 - . . scaffold1307 WUBlastX LINE_L1 788663 788818 37 + . . scaffold1307 WUBlastX LINE_L1 789665 789955 46 + . . scaffold1307 WUBlastX LINE_L1-Tx1 789707 789952 57 + . . scaffold1307 WUBlastX LINE_L1-Tx1 790540 790656 47 + . . scaffold1307 TRF Tandem_Repeat 799654 799704 102 + . . scaffold1307 WUBlastX LINE_RTE-X 802365 802691 40 - . . scaffold1307 WUBlastX LTR_Ngaro 814382 814573 94 + . . scaffold1307 WUBlastX LTR_Ngaro 814688 814897 68 + . . scaffold1307 WUBlastX LTR_Ngaro 814887 814985 70 + . . scaffold1307 TRF Tandem_Repeat 815234 815264 62 + . . scaffold1307 TRF Tandem_Repeat 860432 860473 59 + . . scaffold1307 TRF Tandem_Repeat 864377 864406 51 + . . scaffold1308 GLEAN promoter 7557 8556 1 + . ID=CGI_10003477; scaffold1308 GLEAN mRNA 8557 10175 1 + . ID=CGI_10003477; scaffold1308 TRF Tandem_Repeat 12925 12970 92 + . . scaffold1308 WUBlastX LTR_Gypsy 21058 21453 68 + . . scaffold1308 WUBlastX LTR_Gypsy 21136 21594 150 + . . scaffold1308 WUBlastX LTR_Gypsy 21590 21856 92 + . . scaffold1308 WUBlastX LTR_Gypsy 21593 21805 134 + . . scaffold1308 WUBlastX LTR_Gypsy 21629 21979 50 + . . scaffold1308 WUBlastX LTR_Gypsy 22049 22552 152 + . . scaffold1308 WUBlastX LTR_Gypsy 22136 22546 264 + . . scaffold1308 WUBlastX LTR_Gypsy 22503 22757 111 + . . scaffold1308 TRF Tandem_Repeat 36136 36168 66 + . . scaffold1308 WUBlastX LINE_RTE-X 38100 39212 226 + . . scaffold1308 WUBlastX LINE_RTE-X 39180 39788 112 + . . scaffold1308 WUBlastX LINE_RTE-X 39345 39737 260 + . . scaffold1308 WUBlastX LINE_RTE-X 39722 40270 230 + . . scaffold1308 WUBlastX LINE_RTE-X 40258 40752 187 + . . scaffold1308 WUBlastX LINE_RTE-X 40677 40946 53 + . . scaffold1308 WUBlastX LINE_RTE-X 40680 40856 88 + . . scaffold1308 GLEAN promoter 51981 52980 0.999973 + . ID=CGI_10003478; scaffold1308 GLEAN mRNA 52981 58362 0.999973 + . ID=CGI_10003478; scaffold1308 GLEAN mRNA 67983 72918 1 - . ID=CGI_10003479; scaffold1308 GLEAN promoter 72919 73918 1 - . ID=CGI_10003479; scaffold1309 GLEAN mRNA 737 7460 1 - . ID=CGI_10011551; scaffold1309 GLEAN promoter 7461 8460 1 - . ID=CGI_10011551; scaffold1309 GLEAN mRNA 8992 9489 1 - . ID=CGI_10011552; scaffold1309 GLEAN promoter 9490 10489 1 - . ID=CGI_10011552; scaffold1309 GLEAN mRNA 14286 14795 0.728625 - . ID=CGI_10011553; scaffold1309 GLEAN promoter 14796 15795 0.728625 - . ID=CGI_10011553; scaffold1309 GLEAN mRNA 16853 23044 1 - . ID=CGI_10011554; scaffold1309 GLEAN promoter 23045 24044 1 - . ID=CGI_10011554; scaffold1309 GLEAN promoter 23234 24233 0.999998 + . ID=CGI_10011555; scaffold1309 GLEAN mRNA 24234 31345 0.999998 + . ID=CGI_10011555; scaffold1309 GLEAN mRNA 31862 43978 0.681312 - . ID=CGI_10011556; scaffold1309 GLEAN promoter 43979 44978 0.681312 - . ID=CGI_10011556; scaffold1309 GLEAN mRNA 45598 47082 1 - . ID=CGI_10011557; scaffold1309 GLEAN promoter 47083 48082 1 - . ID=CGI_10011557; scaffold1309 GLEAN promoter 52548 53547 1 + . ID=CGI_10011558; scaffold1309 GLEAN mRNA 53548 58137 1 + . ID=CGI_10011558; scaffold1309 GLEAN mRNA 58959 69302 0.540966 - . ID=CGI_10011559; scaffold1309 GLEAN promoter 59680 60679 1 + . ID=CGI_10011560; scaffold1309 GLEAN mRNA 60680 62755 1 + . ID=CGI_10011560; scaffold1309 GLEAN promoter 69303 70302 0.540966 - . ID=CGI_10011559; scaffold1309 GLEAN mRNA 69538 71557 0.580363 - . ID=CGI_10011561; scaffold1309 GLEAN promoter 71558 72557 0.580363 - . ID=CGI_10011561; scaffold1309 GLEAN promoter 71708 72707 0.739968 + . ID=CGI_10011562; scaffold1309 GLEAN mRNA 72708 88596 0.739968 + . ID=CGI_10011562; scaffold1309 GLEAN mRNA 91371 96011 1 - . ID=CGI_10011563; scaffold1309 GLEAN promoter 96012 97011 1 - . ID=CGI_10011563; scaffold1309 GLEAN promoter 102614 103613 1 + . ID=CGI_10011564; scaffold1309 GLEAN mRNA 103614 104902 1 + . ID=CGI_10011564; scaffold1309 GLEAN mRNA 107336 116026 1 - . ID=CGI_10011565; scaffold1309 GLEAN promoter 116027 117026 1 - . ID=CGI_10011565; scaffold1309 GLEAN promoter 128866 129865 0.653907 + . ID=CGI_10011566; scaffold1309 GLEAN mRNA 129866 143956 0.653907 + . ID=CGI_10011566; scaffold1309 GLEAN mRNA 147582 157861 1 - . ID=CGI_10011567; scaffold1309 GLEAN promoter 157385 158384 1 + . ID=CGI_10011568; scaffold1309 GLEAN promoter 157862 158861 1 - . ID=CGI_10011567; scaffold1309 GLEAN mRNA 158385 165980 1 + . ID=CGI_10011568; scaffold1309 GLEAN mRNA 167902 171832 0.641245 - . ID=CGI_10011569; scaffold1309 GLEAN promoter 171833 172832 0.641245 - . ID=CGI_10011569; scaffold1309 GLEAN promoter 176970 177969 0.544321 + . ID=CGI_10011571; scaffold1309 GLEAN mRNA 177351 181405 0.97645 - . ID=CGI_10011570; scaffold1309 GLEAN mRNA 177970 184859 0.544321 + . ID=CGI_10011571; scaffold1309 GLEAN promoter 181406 182405 0.97645 - . ID=CGI_10011570; scaffold1309 GLEAN promoter 196143 197142 0.785049 + . ID=CGI_10011572; scaffold1309 GLEAN mRNA 197143 203473 0.785049 + . ID=CGI_10011572; scaffold1309 GLEAN promoter 202607 203606 0.999472 + . ID=CGI_10011573; scaffold1309 GLEAN mRNA 203607 221504 0.999472 + . ID=CGI_10011573; scaffold1309 GLEAN mRNA 209358 211238 0.531613 - . ID=CGI_10011574; scaffold1309 GLEAN promoter 211239 212238 0.531613 - . ID=CGI_10011574; scaffold1309 GLEAN promoter 252048 253047 0.702349 + . ID=CGI_10011575; scaffold1309 GLEAN mRNA 253048 263189 0.702349 + . ID=CGI_10011575; scaffold1309 GLEAN mRNA 267318 269138 1 - . ID=CGI_10011576; scaffold1309 GLEAN promoter 269139 270138 1 - . ID=CGI_10011576; scaffold1309 GLEAN mRNA 273614 275604 0.999895 - . ID=CGI_10011577; scaffold1309 GLEAN promoter 275605 276604 0.999895 - . ID=CGI_10011577; scaffold1309 GLEAN promoter 282970 283969 0.999393 + . ID=CGI_10011578; scaffold1309 GLEAN mRNA 283970 294741 0.999393 + . ID=CGI_10011578; scaffold1310 WUBlastX DNA_MuDR 189 446 64 - . . scaffold1311 GLEAN mRNA 1560 1862 0.480721 - . ID=CGI_10000723; scaffold1311 GLEAN promoter 1863 2862 0.480721 - . ID=CGI_10000723; scaffold1311 GLEAN promoter 2915 3914 1 + . ID=CGI_10000724; scaffold1311 GLEAN mRNA 3915 4187 1 + . ID=CGI_10000724; scaffold1311 GLEAN mRNA 4328 4780 0.999984 - . ID=CGI_10000725; scaffold1311 GLEAN promoter 4781 5780 0.999984 - . ID=CGI_10000725; scaffold1311 GLEAN promoter 5170 6169 0.999984 + . ID=CGI_10000727; scaffold1311 GLEAN mRNA 5970 6131 0.997681 - . ID=CGI_10000726; scaffold1311 GLEAN promoter 6132 7131 0.997681 - . ID=CGI_10000726; scaffold1311 GLEAN mRNA 6170 6466 0.999984 + . ID=CGI_10000727; scaffold1311 GLEAN promoter 6440 7439 0.999372 + . ID=CGI_10000728; scaffold1311 GLEAN mRNA 7440 7748 0.999372 + . ID=CGI_10000728; scaffold1312 GLEAN mRNA 4240 6155 0.999761 - . ID=CGI_10000493; scaffold1312 GLEAN promoter 6156 6212 0.999761 - . ID=CGI_10000493; scaffold1314 TRF Tandem_Repeat 4132 4187 112 + . . scaffold1314 TRF Tandem_Repeat 4286 4334 91 + . . scaffold1314 TRF Tandem_Repeat 5921 6117 313 + . . scaffold1314 TRF Tandem_Repeat 13323 13394 108 + . . scaffold1314 TRF Tandem_Repeat 16621 16666 92 + . . scaffold1314 WUBlastX LINE_L1-Tx1 18972 19799 122 + . . scaffold1314 WUBlastX LINE_L1-Tx1 19831 20469 70 + . . scaffold1314 WUBlastX LINE_L1-Tx1 20436 20639 61 + . . scaffold1314 WUBlastX LINE_L1-Tx1 20579 20917 109 + . . scaffold1314 WUBlastX LINE_L1-Tx1 20579 20800 147 + . . scaffold1314 WUBlastX LINE_L1-Tx1 20846 21112 43 + . . scaffold1314 GLEAN promoter 20933 21932 0.850958 + . ID=CGI_10009302; scaffold1314 GLEAN mRNA 21933 22668 0.850958 + . ID=CGI_10009302; scaffold1314 TRF Tandem_Repeat 22146 22199 101 + . . scaffold1314 GLEAN promoter 23248 24247 0.657792 + . ID=CGI_10009303; scaffold1314 GLEAN mRNA 24248 26243 0.657792 + . ID=CGI_10009303; scaffold1314 WUBlastX DNA_Sola 24317 25072 22 + . . scaffold1314 WUBlastX DNA_Sola 24488 25030 42 + . . scaffold1314 WUBlastX DNA_Sola 25258 25608 48 + . . scaffold1314 TRF Tandem_Repeat 25705 25731 54 + . . scaffold1314 WUBlastX DNA_Sola 25747 25875 38 + . . scaffold1314 WUBlastX LINE_L1-Tx1 28855 30069 105 - . . scaffold1314 GLEAN mRNA 50687 53786 0.992636 - . ID=CGI_10009304; scaffold1314 GLEAN promoter 53787 54786 0.992636 - . ID=CGI_10009304; scaffold1314 WUBlastX LINE_Penelope 54999 55622 44 + . . scaffold1314 WUBlastX LINE_Penelope 55014 55154 67 + . . scaffold1314 WUBlastX LINE_Penelope 55017 55751 34 + . . scaffold1314 WUBlastX LINE_Penelope 55763 56026 23 + . . scaffold1314 WUBlastX LINE_Penelope 55877 56065 38 + . . scaffold1314 TRF Tandem_Repeat 61913 61965 106 + . . scaffold1314 TRF Tandem_Repeat 62640 62691 95 + . . scaffold1314 TRF Tandem_Repeat 63378 63414 74 + . . scaffold1314 TRF Tandem_Repeat 75098 75152 110 + . . scaffold1314 TRF Tandem_Repeat 77313 77368 112 + . . scaffold1314 WUBlastX LINE_L2 83119 83550 46 + . . scaffold1314 WUBlastX LINE_L1-Tx1 83827 83970 90 + . . scaffold1314 WUBlastX LINE_L1-Tx1 83845 84048 61 + . . scaffold1314 WUBlastX LINE_L1-Tx1 83976 84266 36 + . . scaffold1314 WUBlastX LINE_L1 84006 84128 45 + . . scaffold1314 WUBlastX LINE_L1-Tx1 84236 84520 113 + . . scaffold1314 WUBlastX LINE_L1-Tx1 84537 84824 70 + . . scaffold1314 WUBlastX RC_Helitron 84758 85342 75 - . . scaffold1314 WUBlastX RC_Helitron 84872 85507 178 - . . scaffold1314 WUBlastX LINE_L1-Tx1 85455 85586 23 + . . scaffold1314 WUBlastX LINE_L1-Tx1 85576 86091 341 + . . scaffold1314 WUBlastX LINE_L1-Tx1 86094 86813 186 + . . scaffold1314 WUBlastX LINE_L1-Tx1 86644 87192 54 + . . scaffold1314 WUBlastX LINE_L1 86653 87069 107 + . . scaffold1314 WUBlastX LINE_L1-Tx1 87221 87403 35 + . . scaffold1314 WUBlastX LINE_L1-Tx1 88859 89317 39 + . . scaffold1314 WUBlastX LINE_L1-Tx1 88895 89218 71 + . . scaffold1314 GLEAN mRNA 90727 94818 1 - . ID=CGI_10009305; scaffold1314 GLEAN promoter 94819 95818 1 - . ID=CGI_10009305; scaffold1314 TRF Tandem_Repeat 101705 101753 89 + . . scaffold1314 TRF Tandem_Repeat 102441 102507 134 + . . scaffold1314 GLEAN promoter 105556 106555 0.685915 + . ID=CGI_10009306; scaffold1314 GLEAN mRNA 106556 120530 0.685915 + . ID=CGI_10009306; scaffold1314 TRF Tandem_Repeat 109932 109995 56 + . . scaffold1314 TRF Tandem_Repeat 117291 117338 96 + . . scaffold1314 GLEAN promoter 120089 121088 0.533472 + . ID=CGI_10009307; scaffold1314 GLEAN mRNA 121089 121412 0.533472 + . ID=CGI_10009307; scaffold1314 TRF Tandem_Repeat 122950 122988 78 + . . scaffold1314 GLEAN promoter 128407 129406 0.985091 + . ID=CGI_10009308; scaffold1314 GLEAN mRNA 129407 131981 0.985091 + . ID=CGI_10009308; scaffold1314 WUBlastX DNA_MuDR 131697 131954 56 + . . scaffold1314 TRF Tandem_Repeat 136986 137211 185 + . . scaffold1314 TRF Tandem_Repeat 137017 137168 79 + . . scaffold1314 WUBlastX LINE_L2 137517 137870 25 - . . scaffold1314 WUBlastX LINE_CR1 137574 137897 54 - . . scaffold1314 WUBlastX LINE_L2 137628 137936 93 - . . scaffold1314 WUBlastX LINE_CR1 137903 138058 48 - . . scaffold1314 TRF Tandem_Repeat 139683 139893 149 + . . scaffold1314 TRF Tandem_Repeat 139892 140009 105 + . . scaffold1314 WUBlastX LINE_L2 140541 140702 26 - . . scaffold1314 WUBlastX LINE_L2 140675 140941 55 - . . scaffold1314 WUBlastX LINE_L2 140744 140971 60 - . . scaffold1314 TRF Tandem_Repeat 141876 141993 105 + . . scaffold1314 WUBlastX LINE_L2 142525 142686 26 - . . scaffold1314 WUBlastX LINE_L2 142659 142925 55 - . . scaffold1314 WUBlastX LINE_L2 142728 142955 60 - . . scaffold1314 TRF Tandem_Repeat 149305 149372 58 + . . scaffold1314 WUBlastX LTR_Pao 159958 160380 459 - . . scaffold1314 WUBlastX LTR_Pao 160406 160966 506 - . . scaffold1314 WUBlastX LTR_Pao 160412 161143 286 - . . scaffold1314 WUBlastX LINE_L1 162083 162310 71 + . . scaffold1314 TRF Tandem_Repeat 164139 164178 80 + . . scaffold1314 TRF Tandem_Repeat 164432 164460 58 + . . scaffold1314 WUBlastX DNA_TcMar-Pogo 165663 165926 100 - . . scaffold1314 WUBlastX DNA_TcMar-Pogo 165935 165976 23 - . . scaffold1314 WUBlastX DNA_TcMar-Pogo 166054 166257 55 - . . scaffold1314 TRF Tandem_Repeat 175359 175400 50 + . . scaffold1314 TRF Tandem_Repeat 176543 176576 52 + . . scaffold1314 GLEAN mRNA 179869 191602 0.999193 - . ID=CGI_10009309; scaffold1314 TRF Tandem_Repeat 184155 184192 76 + . . scaffold1314 WUBlastX LINE_Penelope 184979 185398 69 + . . scaffold1314 TRF Tandem_Repeat 187253 187343 87 + . . scaffold1314 TRF Tandem_Repeat 187579 187628 100 + . . scaffold1314 TRF Tandem_Repeat 187806 187831 52 + . . scaffold1314 TRF Tandem_Repeat 188896 188966 67 + . . scaffold1314 GLEAN promoter 190556 191555 1 + . ID=CGI_10009310; scaffold1314 GLEAN mRNA 191556 197945 1 + . ID=CGI_10009310; scaffold1314 GLEAN promoter 191603 192602 0.999193 - . ID=CGI_10009309; scaffold1314 TRF Tandem_Repeat 202508 202539 64 + . . scaffold1314 TRF Tandem_Repeat 203797 203835 69 + . . scaffold1314 TRF Tandem_Repeat 204019 204044 52 + . . scaffold1314 TRF Tandem_Repeat 207974 208323 207 + . . scaffold1314 TRF Tandem_Repeat 208865 209462 618 + . . scaffold1314 TRF Tandem_Repeat 208874 209455 605 + . . scaffold1314 TRF Tandem_Repeat 212427 212480 108 + . . scaffold1314 TRF Tandem_Repeat 221729 221826 97 + . . scaffold1315 TRF Tandem_Repeat 8145 8188 72 + . . scaffold1315 TRF Tandem_Repeat 23087 23135 71 + . . scaffold1315 TRF Tandem_Repeat 23088 23130 59 + . . scaffold1315 GLEAN promoter 23729 24728 0.999612 + . ID=CGI_10021591; scaffold1315 GLEAN mRNA 24729 31202 0.999612 + . ID=CGI_10021591; scaffold1315 WUBlastX LINE_L1-Tx1 26974 27405 49 + . . scaffold1315 WUBlastX LINE_L1-Tx1 28179 28421 23 + . . scaffold1315 WUBlastX LINE_L1 28230 28406 28 + . . scaffold1315 WUBlastX LINE_L1 28275 28415 33 + . . scaffold1315 WUBlastX LINE_L1-Tx1 28430 28687 65 + . . scaffold1315 WUBlastX LINE_L1-Tx1 28433 28840 34 + . . scaffold1315 WUBlastX DNA_Sola 30522 30689 81 + . . scaffold1315 GLEAN mRNA 31055 51619 0.972425 - . ID=CGI_10021592; scaffold1315 TRF Tandem_Repeat 34483 34528 92 + . . scaffold1315 GLEAN promoter 51620 52619 0.972425 - . ID=CGI_10021592; scaffold1315 WUBlastX LINE_RTE-X 57386 57643 74 - . . scaffold1315 TRF Tandem_Repeat 62600 62692 177 + . . scaffold1315 GLEAN promoter 69526 70525 0.833601 + . ID=CGI_10021593; scaffold1315 GLEAN mRNA 70526 72819 0.833601 + . ID=CGI_10021593; scaffold1315 GLEAN promoter 81313 82312 0.993319 + . ID=CGI_10021594; scaffold1315 TRF Tandem_Repeat 82153 82200 80 + . . scaffold1315 GLEAN mRNA 82313 91778 0.993319 + . ID=CGI_10021594; scaffold1315 TRF Tandem_Repeat 92300 92604 392 + . . scaffold1315 GLEAN promoter 93352 94351 0.986676 + . ID=CGI_10021595; scaffold1315 GLEAN mRNA 94352 95962 0.986676 + . ID=CGI_10021595; scaffold1315 GLEAN mRNA 102205 106658 0.999036 - . ID=CGI_10021596; scaffold1315 GLEAN promoter 103044 104043 0.999824 + . ID=CGI_10021597; scaffold1315 GLEAN mRNA 104044 112762 0.999824 + . ID=CGI_10021597; scaffold1315 GLEAN promoter 106659 107658 0.999036 - . ID=CGI_10021596; scaffold1315 GLEAN mRNA 106761 107027 0.998409 - . ID=CGI_10021598; scaffold1315 GLEAN promoter 107028 108027 0.998409 - . ID=CGI_10021598; scaffold1315 TRF Tandem_Repeat 111203 111670 268 + . . scaffold1315 GLEAN promoter 114033 115032 1 + . ID=CGI_10021599; scaffold1315 GLEAN mRNA 115033 120143 1 + . ID=CGI_10021599; scaffold1315 GLEAN mRNA 122739 131421 0.999676 - . ID=CGI_10021600; scaffold1315 GLEAN promoter 130733 131732 0.544432 + . ID=CGI_10021601; scaffold1315 GLEAN promoter 131422 132421 0.999676 - . ID=CGI_10021600; scaffold1315 GLEAN mRNA 131733 149570 0.544432 + . ID=CGI_10021601; scaffold1315 GLEAN mRNA 138274 138453 0.986676 - . ID=CGI_10021602; scaffold1315 GLEAN promoter 138454 139453 0.986676 - . ID=CGI_10021602; scaffold1315 GLEAN mRNA 145631 160285 0.999675 - . ID=CGI_10021603; scaffold1315 GLEAN promoter 154988 155987 0.999691 + . ID=CGI_10021604; scaffold1315 GLEAN mRNA 155988 157558 0.999691 + . ID=CGI_10021604; scaffold1315 GLEAN promoter 159662 160661 0.927164 + . ID=CGI_10021605; scaffold1315 GLEAN promoter 160286 161285 0.999675 - . ID=CGI_10021603; scaffold1315 GLEAN mRNA 160662 167078 0.927164 + . ID=CGI_10021605; scaffold1315 GLEAN mRNA 172442 174097 0.99941 - . ID=CGI_10021606; scaffold1315 GLEAN promoter 174098 175097 0.99941 - . ID=CGI_10021606; scaffold1315 TRF Tandem_Repeat 175358 175401 88 + . . scaffold1315 WUBlastX LINE_RTE-X 175448 175777 164 + . . scaffold1315 WUBlastX LINE_Jockey 175508 175864 53 + . . scaffold1315 WUBlastX LINE_RTE-X 175834 175956 28 + . . scaffold1315 WUBlastX LINE_RTE-X 176460 176876 57 + . . scaffold1315 WUBlastX LINE_RTE-X 176529 176876 77 + . . scaffold1315 TRF Tandem_Repeat 176924 176968 90 + . . scaffold1315 GLEAN promoter 177203 178202 0.985772 + . ID=CGI_10021607; scaffold1315 GLEAN mRNA 178203 201001 0.985772 + . ID=CGI_10021607; scaffold1315 GLEAN mRNA 186991 198136 0.998573 - . ID=CGI_10021608; scaffold1315 TRF Tandem_Repeat 197136 197400 458 + . . scaffold1315 GLEAN promoter 198137 199136 0.998573 - . ID=CGI_10021608; scaffold1315 GLEAN mRNA 201837 202960 0.836238 - . ID=CGI_10021609; scaffold1315 GLEAN promoter 202961 203960 0.836238 - . ID=CGI_10021609; scaffold1315 TRF Tandem_Repeat 207384 208471 1517 + . . scaffold1315 GLEAN mRNA 211177 212309 0.777737 - . ID=CGI_10021610; scaffold1315 GLEAN promoter 212310 213309 0.777737 - . ID=CGI_10021610; scaffold1315 GLEAN promoter 212354 213353 1 + . ID=CGI_10021611; scaffold1315 GLEAN mRNA 213354 216249 1 + . ID=CGI_10021611; scaffold1315 GLEAN mRNA 216723 218592 0.557051 - . ID=CGI_10021612; scaffold1315 GLEAN promoter 218593 219592 0.557051 - . ID=CGI_10021612; scaffold1315 GLEAN mRNA 222577 223844 0.504765 - . ID=CGI_10021613; scaffold1315 GLEAN promoter 223845 224844 0.504765 - . ID=CGI_10021613; scaffold1315 GLEAN mRNA 224357 225825 0.831973 - . ID=CGI_10021614; scaffold1315 GLEAN promoter 225826 226825 0.831973 - . ID=CGI_10021614; scaffold1315 WUBlastX LINE_L2 229391 230215 123 + . . scaffold1315 WUBlastX LINE_CR1-L2 229538 230167 258 + . . scaffold1315 WUBlastX LINE_L2 230895 231488 221 + . . scaffold1315 WUBlastX LINE_L2 230958 231599 109 + . . scaffold1315 GLEAN promoter 250264 251263 1 + . ID=CGI_10021615; scaffold1315 GLEAN mRNA 251264 251473 1 + . ID=CGI_10021615; scaffold1315 TRF Tandem_Repeat 254837 254884 51 + . . scaffold1315 TRF Tandem_Repeat 257058 257110 97 + . . scaffold1315 GLEAN mRNA 267837 268391 0.99998 - . ID=CGI_10021616; scaffold1315 GLEAN promoter 268392 269391 0.99998 - . ID=CGI_10021616; scaffold1315 WUBlastX LTR_Gypsy 268651 269646 201 - . . scaffold1315 WUBlastX LTR_Gypsy-Cigr 268816 271404 1481 - . . scaffold1315 WUBlastX LTR_Gypsy 271066 271470 55 - . . scaffold1315 WUBlastX LTR_Gypsy 271463 271543 21 - . . scaffold1315 WUBlastX LTR_Gypsy 272164 272460 57 - . . scaffold1315 WUBlastX LTR_Gypsy 272218 272577 109 - . . scaffold1315 WUBlastX LTR_Gypsy-Cigr 272275 273321 241 - . . scaffold1315 WUBlastX LTR_Gypsy 272674 273447 85 - . . scaffold1315 WUBlastX LTR_Gypsy-Cigr 273513 274226 82 - . . scaffold1315 WUBlastX LTR_Gypsy 273930 274247 87 - . . scaffold1315 TRF Tandem_Repeat 279146 279182 65 + . . scaffold1315 TRF Tandem_Repeat 279876 279922 71 + . . scaffold1315 TRF Tandem_Repeat 299918 300022 92 + . . scaffold1315 TRF Tandem_Repeat 301166 301270 112 + . . scaffold1315 TRF Tandem_Repeat 302445 302488 70 + . . scaffold1315 GLEAN mRNA 303767 329484 0.999571 - . ID=CGI_10021617; scaffold1315 GLEAN promoter 329485 330484 0.999571 - . ID=CGI_10021617; scaffold1315 TRF Tandem_Repeat 330391 330461 124 + . . scaffold1315 TRF Tandem_Repeat 339124 339173 100 + . . scaffold1315 TRF Tandem_Repeat 340908 340941 68 + . . scaffold1315 TRF Tandem_Repeat 341803 341845 70 + . . scaffold1315 GLEAN mRNA 348769 379010 0.999675 - . ID=CGI_10021618; scaffold1315 TRF Tandem_Repeat 352647 352707 104 + . . scaffold1315 GLEAN promoter 379011 380010 0.999675 - . ID=CGI_10021618; scaffold1315 TRF Tandem_Repeat 387348 387386 55 + . . scaffold1315 GLEAN promoter 419480 420479 0.999676 + . ID=CGI_10021619; scaffold1315 GLEAN mRNA 420480 437076 0.999676 + . ID=CGI_10021619; scaffold1315 TRF Tandem_Repeat 441742 441774 66 + . . scaffold1315 TRF Tandem_Repeat 444169 444213 83 + . . scaffold1315 GLEAN mRNA 445075 452748 0.998149 - . ID=CGI_10021620; scaffold1315 TRF Tandem_Repeat 448539 448586 96 + . . scaffold1315 GLEAN promoter 452749 453748 0.998149 - . ID=CGI_10021620; scaffold1315 GLEAN promoter 461245 462244 0.408651 + . ID=CGI_10021621; scaffold1315 GLEAN mRNA 462245 494069 0.408651 + . ID=CGI_10021621; scaffold1315 TRF Tandem_Repeat 471642 471694 106 + . . scaffold1315 TRF Tandem_Repeat 505132 505264 124 + . . scaffold1315 TRF Tandem_Repeat 505845 506046 296 + . . scaffold1315 WUBlastX DNA_MuDR 507482 507886 93 - . . scaffold1315 WUBlastX DNA_MuDR 507521 507964 89 - . . scaffold1315 WUBlastX DNA_MuDR 508170 508313 58 - . . scaffold1315 WUBlastX DNA_MuDR 508194 508487 91 - . . scaffold1315 WUBlastX DNA_MuDR 508528 508797 111 - . . scaffold1315 GLEAN mRNA 509041 510100 0.999989 - . ID=CGI_10021622; scaffold1315 GLEAN promoter 510101 511100 0.999989 - . ID=CGI_10021622; scaffold1315 TRF Tandem_Repeat 510540 510630 128 + . . scaffold1315 TRF Tandem_Repeat 511245 511287 86 + . . scaffold1315 WUBlastX LINE_CR1 511675 511842 41 - . . scaffold1315 WUBlastX LINE_CR1 511684 511812 62 - . . scaffold1315 WUBlastX LINE_RTE-X 513241 513477 41 - . . scaffold1315 WUBlastX LINE_RTE-X 513298 513546 65 - . . scaffold1315 WUBlastX LINE_RTE-X 513576 513650 23 - . . scaffold1315 WUBlastX LINE_CR1 513604 514116 39 - . . scaffold1315 WUBlastX LINE_RTE-X 513697 514245 315 - . . scaffold1315 WUBlastX LINE_RTE-X 513706 514368 193 - . . scaffold1315 WUBlastX LTR_DIRS 517555 518571 634 - . . scaffold1315 WUBlastX LTR_DIRS 518349 520478 1086 - . . scaffold1315 WUBlastX LTR_DIRS 520418 521437 153 - . . scaffold1315 WUBlastX LTR_DIRS 520487 521269 238 - . . scaffold1315 GLEAN promoter 521066 522065 0.9886 + . ID=CGI_10021623; scaffold1315 GLEAN mRNA 522066 545999 0.9886 + . ID=CGI_10021623; scaffold1315 WUBlastX LINE_RTE-X 525705 526049 86 + . . scaffold1315 GLEAN mRNA 546626 556638 0.989641 - . ID=CGI_10021624; scaffold1315 TRF Tandem_Repeat 549408 549446 51 + . . scaffold1315 GLEAN promoter 556639 557638 0.989641 - . ID=CGI_10021624; scaffold1315 WUBlastX LINE_RTE-X 560837 561052 49 - . . scaffold1315 WUBlastX LINE_RTE-X 560840 561133 44 - . . scaffold1315 TRF Tandem_Repeat 574906 575096 237 + . . scaffold1315 TRF Tandem_Repeat 574908 575096 227 + . . scaffold1315 TRF Tandem_Repeat 576375 577057 505 + . . scaffold1315 TRF Tandem_Repeat 576375 577044 700 + . . scaffold1315 TRF Tandem_Repeat 576375 577057 663 + . . scaffold1315 TRF Tandem_Repeat 587465 587556 94 + . . scaffold1315 GLEAN promoter 612333 613332 0.999669 + . ID=CGI_10021625; scaffold1315 GLEAN mRNA 613333 629905 0.999669 + . ID=CGI_10021625; scaffold1315 GLEAN mRNA 625390 632320 0.999538 - . ID=CGI_10021626; scaffold1315 GLEAN promoter 632321 633320 0.999538 - . ID=CGI_10021626; scaffold1315 TRF Tandem_Repeat 636323 636372 100 + . . scaffold1315 TRF Tandem_Repeat 638182 638227 92 + . . scaffold1315 WUBlastX LINE_Penelope 643491 643688 81 - . . scaffold1315 TRF Tandem_Repeat 651024 651051 56 + . . scaffold1315 WUBlastX RC_Helitron 652011 653207 563 + . . scaffold1315 WUBlastX RC_Helitron 653150 654052 342 + . . scaffold1315 WUBlastX RC_Helitron 653555 656380 1654 + . . scaffold1315 WUBlastX DNA_IS 656552 657769 2000 + . . scaffold1315 GLEAN mRNA 688539 696190 0.999948 - . ID=CGI_10021627; scaffold1315 WUBlastX LINE_Penelope 688683 689276 61 - . . scaffold1315 WUBlastX LINE_Penelope 688722 689033 63 - . . scaffold1315 WUBlastX LINE_Penelope 689035 689535 21 - . . scaffold1315 WUBlastX LINE_Penelope 689371 689628 51 - . . scaffold1315 TRF Tandem_Repeat 693238 693501 168 + . . scaffold1315 GLEAN promoter 696191 697190 0.999948 - . ID=CGI_10021627; scaffold1315 GLEAN promoter 696969 697968 0.999981 + . ID=CGI_10021628; scaffold1315 GLEAN mRNA 697969 700772 0.999981 + . ID=CGI_10021628; scaffold1315 GLEAN mRNA 704049 704240 0.649333 - . ID=CGI_10021629; scaffold1315 GLEAN promoter 704241 705240 0.649333 - . ID=CGI_10021629; scaffold1315 WUBlastX LINE_Penelope 704290 706200 839 - . . scaffold1315 WUBlastX LINE_Penelope 705241 706422 59 - . . scaffold1315 TRF Tandem_Repeat 706246 706280 54 + . . scaffold1316 GLEAN promoter 14423 15422 0.304128 + . ID=CGI_10016291; scaffold1316 GLEAN mRNA 15423 26637 0.304128 + . ID=CGI_10016291; scaffold1316 GLEAN promoter 31032 32031 0.999949 + . ID=CGI_10016292; scaffold1316 GLEAN mRNA 32032 47573 0.999949 + . ID=CGI_10016292; scaffold1316 TRF Tandem_Repeat 33348 33432 71 + . . scaffold1316 TRF Tandem_Repeat 33351 33432 101 + . . scaffold1316 TRF Tandem_Repeat 41444 41482 78 + . . scaffold1316 TRF Tandem_Repeat 41576 41619 88 + . . scaffold1316 TRF Tandem_Repeat 47030 47082 97 + . . scaffold1316 GLEAN mRNA 64619 65113 1 - . ID=CGI_10016293; scaffold1316 GLEAN promoter 65114 66113 1 - . ID=CGI_10016293; scaffold1316 GLEAN promoter 68329 69328 0.593293 + . ID=CGI_10016294; scaffold1316 TRF Tandem_Repeat 68402 68490 87 + . . scaffold1316 GLEAN mRNA 69329 70375 0.593293 + . ID=CGI_10016294; scaffold1316 TRF Tandem_Repeat 71343 71389 62 + . . scaffold1316 TRF Tandem_Repeat 72140 72275 70 + . . scaffold1316 GLEAN promoter 78386 79385 0.996199 + . ID=CGI_10016295; scaffold1316 GLEAN mRNA 79386 80798 0.996199 + . ID=CGI_10016295; scaffold1316 WUBlastX DNA_Kolobok 96037 96225 50 - . . scaffold1316 WUBlastX LINE_RTE-X 100265 100915 126 - . . scaffold1316 WUBlastX LINE_L2 101612 103081 719 - . . scaffold1316 WUBlastX LINE_Jockey 103074 103181 24 - . . scaffold1316 WUBlastX LINE_L1 103305 103439 31 - . . scaffold1316 TRF Tandem_Repeat 106456 107356 1139 + . . scaffold1316 GLEAN promoter 110923 111922 0.999101 + . ID=CGI_10016296; scaffold1316 GLEAN mRNA 111923 113462 0.999101 + . ID=CGI_10016296; scaffold1316 GLEAN promoter 113656 114655 0.955869 + . ID=CGI_10016297; scaffold1316 GLEAN mRNA 114656 117685 0.955869 + . ID=CGI_10016297; scaffold1316 TRF Tandem_Repeat 115403 115460 116 + . . scaffold1316 WUBlastX DNA_IS4EU 147676 147795 29 + . . scaffold1316 WUBlastX DNA_IS4EU 148236 148358 48 + . . scaffold1316 WUBlastX DNA_IS4EU 148482 148691 26 + . . scaffold1316 WUBlastX DNA_IS4EU 148518 148688 76 + . . scaffold1316 WUBlastX DNA_IS4EU 148959 149381 113 + . . scaffold1316 WUBlastX DNA_IS4EU 149805 150161 163 + . . scaffold1316 WUBlastX DNA_Kolobok-IS4 150503 151498 636 - . . scaffold1316 WUBlastX DNA_P 152127 152342 31 - . . scaffold1316 WUBlastX DNA_P 152172 152342 42 - . . scaffold1316 WUBlastX DNA_IS4EU 152885 153049 115 - . . scaffold1316 WUBlastX DNA_Harbinger 156523 156642 51 - . . scaffold1316 WUBlastX DNA_Harbinger 156692 156766 23 - . . scaffold1316 WUBlastX DNA_Harbinger 158365 158643 150 - . . scaffold1316 WUBlastX DNA_Harbinger 158748 158915 56 - . . scaffold1316 WUBlastX DNA_Harbinger 159320 159562 51 - . . scaffold1316 GLEAN mRNA 173430 175142 0.999999 - . ID=CGI_10016298; scaffold1316 WUBlastX LTR_ERV1 174294 174788 31 - . . scaffold1316 GLEAN promoter 175143 176142 0.999999 - . ID=CGI_10016298; scaffold1316 GLEAN mRNA 180973 197363 0.999999 - . ID=CGI_10016299; scaffold1316 TRF Tandem_Repeat 194040 194066 54 + . . scaffold1316 GLEAN promoter 197364 198363 0.999999 - . ID=CGI_10016299; scaffold1316 GLEAN mRNA 200307 205065 0.648335 - . ID=CGI_10016301; scaffold1316 GLEAN promoter 203787 204786 0.95582 + . ID=CGI_10016302; scaffold1316 GLEAN mRNA 204787 214535 0.95582 + . ID=CGI_10016302; scaffold1316 GLEAN promoter 205066 206065 0.648335 - . ID=CGI_10016301; scaffold1316 TRF Tandem_Repeat 207617 207662 92 + . . scaffold1316 TRF Tandem_Repeat 207668 207701 59 + . . scaffold1316 TRF Tandem_Repeat 216653 216727 116 + . . scaffold1316 GLEAN mRNA 218060 220970 1 - . ID=CGI_10016303; scaffold1316 GLEAN promoter 220971 221970 1 - . ID=CGI_10016303; scaffold1316 TRF Tandem_Repeat 221854 222289 413 + . . scaffold1316 TRF Tandem_Repeat 221854 222289 380 + . . scaffold1316 GLEAN promoter 223231 224230 0.999676 + . ID=CGI_10016304; scaffold1316 GLEAN mRNA 224231 227427 0.999676 + . ID=CGI_10016304; scaffold1316 TRF Tandem_Repeat 229260 229284 50 + . . scaffold1316 TRF Tandem_Repeat 234929 234987 118 + . . scaffold1316 TRF Tandem_Repeat 236412 236454 86 + . . scaffold1316 TRF Tandem_Repeat 236656 236721 132 + . . scaffold1316 GLEAN promoter 237761 238760 1 + . ID=CGI_10016305; scaffold1316 GLEAN mRNA 238761 243613 1 + . ID=CGI_10016305; scaffold1316 TRF Tandem_Repeat 253343 253379 74 + . . scaffold1316 TRF Tandem_Repeat 255799 255862 128 + . . scaffold1316 TRF Tandem_Repeat 257392 257493 68 + . . scaffold1316 TRF Tandem_Repeat 257932 258013 137 + . . scaffold1316 GLEAN promoter 258603 259602 0.995793 + . ID=CGI_10016306; scaffold1316 GLEAN mRNA 259603 261597 0.995793 + . ID=CGI_10016306; scaffold1316 WUBlastX LTR_Gypsy 260011 260538 59 + . . scaffold1316 WUBlastX LTR_Gypsy-Cigr 260098 260823 186 + . . scaffold1316 WUBlastX LTR_Gypsy 260596 260916 57 + . . scaffold1316 WUBlastX LTR_ERV1 260650 260856 66 + . . scaffold1316 WUBlastX LTR_Copia 260830 261228 31 + . . scaffold1316 WUBlastX LTR_Copia 260887 261159 44 + . . scaffold1316 GLEAN promoter 265299 266298 1 + . ID=CGI_10016307; scaffold1316 GLEAN mRNA 266299 278404 1 + . ID=CGI_10016307; scaffold1316 TRF Tandem_Repeat 284061 284117 114 + . . scaffold1316 GLEAN promoter 284802 285801 0.481511 + . ID=CGI_10016308; scaffold1316 GLEAN mRNA 285802 286179 0.481511 + . ID=CGI_10016308; scaffold1316 TRF Tandem_Repeat 289405 289448 61 + . . scaffold1316 TRF Tandem_Repeat 292286 292323 76 + . . scaffold1316 TRF Tandem_Repeat 317563 317647 170 + . . scaffold1316 TRF Tandem_Repeat 322684 322747 128 + . . scaffold1316 GLEAN promoter 329354 330353 0.6496 + . ID=CGI_10016309; scaffold1316 GLEAN mRNA 330354 330746 0.6496 + . ID=CGI_10016309; scaffold1316 TRF Tandem_Repeat 336303 336338 72 + . . scaffold1316 GLEAN promoter 339137 340136 0.999938 + . ID=CGI_10016310; scaffold1316 GLEAN mRNA 340137 349600 0.999938 + . ID=CGI_10016310; scaffold1316 TRF Tandem_Repeat 343901 343936 72 + . . scaffold1316 TRF Tandem_Repeat 348932 348980 98 + . . scaffold1316 GLEAN promoter 358458 359457 0.999575 + . ID=CGI_10016311; scaffold1316 GLEAN mRNA 359458 367840 0.999575 + . ID=CGI_10016311; scaffold1316 GLEAN mRNA 367063 406080 0.346646 - . ID=CGI_10016312; scaffold1316 WUBlastX LINE_L1-Tx1 369654 370151 91 - . . scaffold1316 WUBlastX LINE_L1-Tx1 369801 370202 135 - . . scaffold1316 WUBlastX LINE_L1-Tx1 370211 370771 57 - . . scaffold1316 TRF Tandem_Repeat 380116 380162 76 + . . scaffold1316 TRF Tandem_Repeat 380207 380245 78 + . . scaffold1316 TRF Tandem_Repeat 380325 380380 112 + . . scaffold1316 TRF Tandem_Repeat 385015 385054 80 + . . scaffold1316 TRF Tandem_Repeat 385304 385400 178 + . . scaffold1316 TRF Tandem_Repeat 388347 388400 90 + . . scaffold1316 GLEAN promoter 406081 407080 0.346646 - . ID=CGI_10016312; scaffold1316 GLEAN promoter 406230 407229 0.423698 + . ID=CGI_10016313; scaffold1316 GLEAN mRNA 407230 417417 0.423698 + . ID=CGI_10016313; scaffold1316 GLEAN promoter 419733 420732 0.988982 + . ID=CGI_10016314; scaffold1316 GLEAN mRNA 420733 424842 0.988982 + . ID=CGI_10016314; scaffold1316 GLEAN mRNA 426117 433245 0.999994 - . ID=CGI_10016315; scaffold1316 TRF Tandem_Repeat 428970 429009 80 + . . scaffold1316 TRF Tandem_Repeat 429210 429251 84 + . . scaffold1316 GLEAN promoter 433246 434245 0.999994 - . ID=CGI_10016315; scaffold1316 TRF Tandem_Repeat 434218 434244 54 + . . scaffold1316 GLEAN mRNA 434772 437510 0.999994 - . ID=CGI_10016316; scaffold1316 GLEAN promoter 437511 438510 0.999994 - . ID=CGI_10016316; scaffold1316 TRF Tandem_Repeat 442064 442095 50 + . . scaffold1316 TRF Tandem_Repeat 449036 449099 128 + . . scaffold1316 TRF Tandem_Repeat 450194 450247 108 + . . scaffold1316 GLEAN promoter 458713 459712 1 + . ID=CGI_10016317; scaffold1316 GLEAN mRNA 459713 462528 1 + . ID=CGI_10016317; scaffold1317 TRF Tandem_Repeat 639 740 86 + . . scaffold1317 TRF Tandem_Repeat 1096 1174 70 + . . scaffold1317 TRF Tandem_Repeat 1100 1180 55 + . . scaffold1317 TRF Tandem_Repeat 2689 3191 774 + . . scaffold1317 TRF Tandem_Repeat 3195 3550 525 + . . scaffold1317 TRF Tandem_Repeat 4611 5578 1578 + . . scaffold1317 TRF Tandem_Repeat 6655 6907 364 + . . scaffold1317 GLEAN mRNA 11343 17943 0.999842 - . ID=CGI_10006053; scaffold1317 TRF Tandem_Repeat 12422 12475 108 + . . scaffold1317 TRF Tandem_Repeat 13362 13999 956 + . . scaffold1317 TRF Tandem_Repeat 17308 17765 647 + . . scaffold1317 TRF Tandem_Repeat 17308 17808 356 + . . scaffold1317 GLEAN promoter 17944 18943 0.999842 - . ID=CGI_10006053; scaffold1317 WUBlastX LTR_Pao 18421 18741 21 + . . scaffold1317 WUBlastX LTR_Pao 18616 18945 75 + . . scaffold1317 WUBlastX LTR_Pao 18862 20121 616 + . . scaffold1317 WUBlastX LTR_Pao 19345 20280 197 + . . scaffold1317 WUBlastX LTR_Pao 19366 20637 177 + . . scaffold1317 WUBlastX LTR_Pao 20485 20670 64 + . . scaffold1317 GLEAN promoter 37666 38665 0.999949 + . ID=CGI_10006054; scaffold1317 GLEAN mRNA 38666 49431 0.999949 + . ID=CGI_10006054; scaffold1317 TRF Tandem_Repeat 41036 41126 146 + . . scaffold1317 TRF Tandem_Repeat 41092 41181 99 + . . scaffold1317 TRF Tandem_Repeat 42667 42773 142 + . . scaffold1317 TRF Tandem_Repeat 43464 43490 54 + . . scaffold1317 TRF Tandem_Repeat 43929 43974 92 + . . scaffold1317 TRF Tandem_Repeat 47354 47409 87 + . . scaffold1317 TRF Tandem_Repeat 47671 47706 63 + . . scaffold1317 TRF Tandem_Repeat 48100 48125 52 + . . scaffold1317 TRF Tandem_Repeat 48601 48625 50 + . . scaffold1317 TRF Tandem_Repeat 48776 48820 90 + . . scaffold1317 TRF Tandem_Repeat 48938 48979 75 + . . scaffold1317 TRF Tandem_Repeat 62073 62114 84 + . . scaffold1317 GLEAN promoter 62271 63270 0.481188 + . ID=CGI_10006055; scaffold1317 WUBlastX LINE_L1-Tx1 62587 62712 58 - . . scaffold1317 WUBlastX LINE_L1-Tx1 62763 62861 27 - . . scaffold1317 WUBlastX LINE_L1-Tx1 62780 63010 46 - . . scaffold1317 WUBlastX LINE_L1 62861 62980 78 - . . scaffold1317 WUBlastX LINE_L1-Tx1 62861 63142 59 - . . scaffold1317 WUBlastX LINE_L1-Tx1 62864 63028 61 - . . scaffold1317 WUBlastX DNA_Crypton 63076 63528 39 + . . scaffold1317 GLEAN mRNA 63271 63657 0.481188 + . ID=CGI_10006055; scaffold1317 WUBlastX LTR_Pao 71710 71820 22 + . . scaffold1317 WUBlastX LTR_Pao 71925 72539 197 + . . scaffold1317 WUBlastX LTR_Pao 72045 72608 230 + . . scaffold1317 WUBlastX LTR_Pao 72063 72539 237 + . . scaffold1317 WUBlastX LTR_Pao 72527 72646 65 + . . scaffold1317 WUBlastX LTR_Pao 72578 72703 27 + . . scaffold1317 WUBlastX LTR_Pao 72670 73161 146 + . . scaffold1317 WUBlastX LTR_Pao 72745 73176 162 + . . scaffold1317 WUBlastX LTR_Pao 73044 73613 261 + . . scaffold1317 WUBlastX LTR_Pao 73164 73613 286 + . . scaffold1317 WUBlastX LTR_Pao 73604 73732 111 + . . scaffold1317 WUBlastX LTR_Pao 73679 74974 994 + . . scaffold1317 WUBlastX LINE_L2 86161 86442 27 + . . scaffold1317 WUBlastX LINE_RTE-X 99246 99551 53 - . . scaffold1317 WUBlastX LINE_RTE-X 99393 99623 45 - . . scaffold1317 GLEAN promoter 102076 103075 1 + . ID=CGI_10006056; scaffold1317 GLEAN mRNA 103076 104856 1 + . ID=CGI_10006056; scaffold1317 TRF Tandem_Repeat 106593 107165 699 + . . scaffold1317 GLEAN promoter 114174 115173 0.99481 + . ID=CGI_10006057; scaffold1317 GLEAN mRNA 115174 141084 0.99481 + . ID=CGI_10006057; scaffold1317 TRF Tandem_Repeat 116259 116348 117 + . . scaffold1317 TRF Tandem_Repeat 117722 117809 95 + . . scaffold1317 TRF Tandem_Repeat 125375 125405 53 + . . scaffold1317 TRF Tandem_Repeat 129889 130046 316 + . . scaffold1317 TRF Tandem_Repeat 133007 133248 346 + . . scaffold1317 TRF Tandem_Repeat 134448 134541 87 + . . scaffold1318 WUBlastX DNA_IS4EU 16949 17332 84 + . . scaffold1318 WUBlastX DNA_Kolobok-IS4 16952 17443 80 + . . scaffold1318 WUBlastX DNA_IS4EU 17896 18600 282 - . . scaffold1318 WUBlastX DNA_TcMar-Tc1 21348 22310 453 - . . scaffold1318 GLEAN promoter 24908 25907 0.997661 + . ID=CGI_10008643; scaffold1318 GLEAN mRNA 25908 26138 0.997661 + . ID=CGI_10008643; scaffold1318 GLEAN promoter 46679 47678 0.328272 + . ID=CGI_10008644; scaffold1318 GLEAN mRNA 47679 59079 0.328272 + . ID=CGI_10008644; scaffold1318 WUBlastX DNA_TcMar-Tc1 47787 47987 27 + . . scaffold1318 WUBlastX DNA_TcMar-Tc1 47841 48137 75 + . . scaffold1318 WUBlastX DNA_TcMar-Tc1 48130 48585 205 + . . scaffold1318 WUBlastX DNA_TcMar-Tc1 48151 48738 81 + . . scaffold1318 WUBlastX DNA_TcMar-Tc1 48585 48773 72 + . . scaffold1318 TRF Tandem_Repeat 63071 63135 121 + . . scaffold1318 TRF Tandem_Repeat 64244 64305 124 + . . scaffold1318 GLEAN promoter 65563 66562 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 65884 65913 51 + . . scaffold1318 GLEAN mRNA 66563 100313 0.120326 + . ID=CGI_10008645; scaffold1318 TRF Tandem_Repeat 73040 73097 66 + . . scaffold1318 TRF Tandem_Repeat 73042 73093 63 + . . scaffold1318 TRF Tandem_Repeat 80689 80755 71 + . . scaffold1318 TRF Tandem_Repeat 83117 83153 74 + . . scaffold1318 TRF Tandem_Repeat 90020 90069 100 + . . scaffold1318 TRF Tandem_Repeat 91530 91570 82 + . . scaffold1318 TRF Tandem_Repeat 91644 91685 66 + . . scaffold1318 TRF Tandem_Repeat 93593 94522 1065 + . . scaffold1318 TRF Tandem_Repeat 93593 94522 1179 + . . scaffold1318 TRF Tandem_Repeat 93614 94522 1135 + . . scaffold1318 TRF Tandem_Repeat 94733 94780 78 + . . scaffold1318 TRF Tandem_Repeat 95068 95106 78 + . . scaffold1318 TRF Tandem_Repeat 95508 95548 82 + . . scaffold1318 TRF Tandem_Repeat 95878 95939 115 + . . scaffold1318 TRF Tandem_Repeat 96248 96289 68 + . . scaffold1318 TRF Tandem_Repeat 96753 96803 102 + . . scaffold1318 TRF Tandem_Repeat 100998 101819 1293 + . . scaffold1318 WUBlastX LTR_Gypsy 104259 104414 45 - . . scaffold1318 WUBlastX LTR_Gypsy 104323 104568 91 - . . scaffold1318 WUBlastX LTR_Gypsy 104416 104568 123 - . . scaffold1318 WUBlastX LTR_Gypsy 104446 104568 125 - . . scaffold1318 TRF Tandem_Repeat 116757 116842 154 + . . scaffold1318 WUBlastX RC_Helitron 117196 117699 131 + . . scaffold1318 WUBlastX DNA_Helitron 117301 117813 155 + . . scaffold1318 WUBlastX DNA_P 119225 120766 292 - . . scaffold1318 WUBlastX DNA_P 119303 121036 209 - . . scaffold1318 WUBlastX RC_Helitron 121827 121994 25 + . . scaffold1318 WUBlastX RC_Helitron 121863 122312 116 + . . scaffold1318 WUBlastX RC_Helitron 122079 122267 122 + . . scaffold1318 TRF Tandem_Repeat 125424 125463 80 + . . scaffold1318 TRF Tandem_Repeat 128218 128893 1244 + . . scaffold1318 GLEAN promoter 130503 131502 0.999929 + . ID=CGI_10008646; scaffold1318 GLEAN mRNA 131503 137292 0.999929 + . ID=CGI_10008646; scaffold1318 GLEAN promoter 136602 137601 0.196685 + . ID=CGI_10008647; scaffold1318 GLEAN mRNA 137602 139893 0.196685 + . ID=CGI_10008647; scaffold1318 TRF Tandem_Repeat 137870 137897 56 + . . scaffold1318 TRF Tandem_Repeat 137897 137942 92 + . . scaffold1318 GLEAN promoter 142440 143439 0.822584 + . ID=CGI_10008648; scaffold1318 GLEAN mRNA 143440 145571 0.822584 + . ID=CGI_10008648; scaffold1318 WUBlastX DNA_Maverick 158266 158601 188 - . . scaffold1318 WUBlastX DNA_Maverick 158700 161474 1827 - . . scaffold1318 WUBlastX DNA_Maverick 159468 161873 1087 - . . scaffold1318 WUBlastX DNA_Maverick 163829 164464 407 - . . scaffold1318 WUBlastX DNA_Maverick 164625 165068 174 - . . scaffold1318 WUBlastX DNA_Maverick 165068 166348 752 - . . scaffold1318 WUBlastX DNA_Maverick 166923 167093 36 - . . scaffold1318 WUBlastX DNA_Maverick 166923 167213 31 - . . scaffold1318 WUBlastX LTR_Copia 167022 167129 33 - . . scaffold1318 WUBlastX DNA_Maverick 167184 167345 55 - . . scaffold1318 WUBlastX DNA_Maverick 167199 167321 62 - . . scaffold1318 WUBlastX LTR_Gypsy 167354 167470 49 - . . scaffold1318 WUBlastX DNA_Maverick 167375 168436 596 - . . scaffold1318 WUBlastX LTR_Gypsy 169390 169509 29 - . . scaffold1318 TRF Tandem_Repeat 171594 172418 1319 + . . scaffold1318 GLEAN mRNA 177661 179679 0.723996 - . ID=CGI_10008649; scaffold1318 GLEAN promoter 179680 180679 0.723996 - . ID=CGI_10008649; scaffold1318 TRF Tandem_Repeat 179705 179729 50 + . . scaffold1318 TRF Tandem_Repeat 179964 180034 142 + . . scaffold1318 TRF Tandem_Repeat 180433 180681 282 + . . scaffold1318 TRF Tandem_Repeat 191724 193581 2196 + . . scaffold1318 WUBlastX DNA_Kolobok 202450 202728 112 + . . scaffold1318 WUBlastX DNA_Kolobok 202844 203023 94 + . . scaffold1318 WUBlastX DNA_Kolobok 203204 203389 55 + . . scaffold1318 WUBlastX DNA_Kolobok 203473 203643 64 + . . scaffold1318 TRF Tandem_Repeat 209872 209985 156 + . . scaffold1318 TRF Tandem_Repeat 209989 210176 105 + . . scaffold1318 TRF Tandem_Repeat 210017 210206 102 + . . scaffold1318 TRF Tandem_Repeat 210468 210510 86 + . . scaffold1318 TRF Tandem_Repeat 211119 211987 1157 + . . scaffold1318 TRF Tandem_Repeat 213689 213912 286 + . . scaffold1318 TRF Tandem_Repeat 213689 213943 233 + . . scaffold132 TRF Tandem_Repeat 12327 12354 56 + . . scaffold132 GLEAN promoter 14751 15750 0.999949 + . ID=CGI_10004706; scaffold132 GLEAN mRNA 15751 19527 0.999949 + . ID=CGI_10004706; scaffold132 GLEAN mRNA 23140 32243 0.747326 - . ID=CGI_10004707; scaffold132 GLEAN promoter 32244 33243 0.747326 - . ID=CGI_10004707; scaffold132 TRF Tandem_Repeat 32826 33390 1017 + . . scaffold132 TRF Tandem_Repeat 32826 33390 519 + . . scaffold132 TRF Tandem_Repeat 35655 35874 215 + . . scaffold132 TRF Tandem_Repeat 39239 39371 221 + . . scaffold132 TRF Tandem_Repeat 39242 39327 61 + . . scaffold132 TRF Tandem_Repeat 39257 39344 71 + . . scaffold132 GLEAN promoter 44886 45885 1 + . ID=CGI_10004708; scaffold132 GLEAN mRNA 45886 47561 1 + . ID=CGI_10004708; scaffold132 TRF Tandem_Repeat 50033 50063 62 + . . scaffold132 GLEAN mRNA 51251 59010 0.352617 - . ID=CGI_10004709; scaffold132 GLEAN promoter 59011 60010 0.352617 - . ID=CGI_10004709; scaffold132 WUBlastX LINE_L2 60817 61626 88 - . . scaffold132 TRF Tandem_Repeat 61781 61886 194 + . . scaffold132 GLEAN mRNA 63594 70738 0.999221 - . ID=CGI_10004710; scaffold132 GLEAN promoter 70739 71738 0.999221 - . ID=CGI_10004710; scaffold132 GLEAN promoter 74547 75546 0.998378 + . ID=CGI_10004711; scaffold132 GLEAN mRNA 75547 94641 0.998378 + . ID=CGI_10004711; scaffold132 GLEAN mRNA 87529 98678 0.984697 - . ID=CGI_10004712; scaffold132 GLEAN promoter 98679 99678 0.984697 - . ID=CGI_10004712; scaffold132 GLEAN mRNA 102412 105318 0.999415 - . ID=CGI_10004713; scaffold132 WUBlastX LTR_Pao 102877 103479 21 - . . scaffold132 GLEAN promoter 105319 106318 0.999415 - . ID=CGI_10004713; scaffold132 GLEAN promoter 106438 107437 0.999999 + . ID=CGI_10004714; scaffold132 TRF Tandem_Repeat 106606 106657 77 + . . scaffold132 GLEAN mRNA 107438 107935 0.999999 + . ID=CGI_10004714; scaffold1321 TRF Tandem_Repeat 1940 1984 90 + . . scaffold1321 WUBlastX LINE_RTE-BovB 2832 2960 29 - . . scaffold1321 WUBlastX LINE_RTE-BovB 2957 3085 21 - . . scaffold1321 WUBlastX LINE_RTE-BovB 4187 4561 26 - . . scaffold1321 WUBlastX LINE_RTE-BovB 4259 4552 40 - . . scaffold1321 TRF Tandem_Repeat 12397 12429 50 + . . scaffold1321 TRF Tandem_Repeat 21148 21172 50 + . . scaffold1321 GLEAN mRNA 23658 52155 0.377682 - . ID=CGI_10010658; scaffold1321 TRF Tandem_Repeat 24499 24906 640 + . . scaffold1321 GLEAN promoter 27179 28178 0.648346 + . ID=CGI_10010659; scaffold1321 GLEAN mRNA 28179 44937 0.648346 + . ID=CGI_10010659; scaffold1321 TRF Tandem_Repeat 32045 32145 166 + . . scaffold1321 TRF Tandem_Repeat 32045 32145 177 + . . scaffold1321 TRF Tandem_Repeat 32211 32266 51 + . . scaffold1321 TRF Tandem_Repeat 33531 33593 108 + . . scaffold1321 TRF Tandem_Repeat 50140 50184 58 + . . scaffold1321 GLEAN promoter 51641 52640 1 + . ID=CGI_10010660; scaffold1321 GLEAN promoter 52156 53155 0.377682 - . ID=CGI_10010658; scaffold1321 GLEAN mRNA 52641 53307 1 + . ID=CGI_10010660; scaffold1321 WUBlastX DNA_Sola 85120 85500 64 - . . scaffold1321 WUBlastX LINE_L1-Tx1 87904 88890 494 + . . scaffold1321 WUBlastX LINE_L1-Tx1 88948 90042 515 + . . scaffold1321 WUBlastX LINE_L1-Tx1 90004 90090 20 + . . scaffold1321 TRF Tandem_Repeat 92886 92945 61 + . . scaffold1321 WUBlastX LINE_CR1-L2 92948 93190 38 + . . scaffold1321 WUBlastX LINE_CR1-L2 92948 93136 42 + . . scaffold1321 WUBlastX LINE_L2 93565 93939 76 + . . scaffold1321 WUBlastX LINE_I 97111 97632 112 - . . scaffold1321 WUBlastX LINE_RTE-BovB 97201 98742 442 - . . scaffold1321 WUBlastX LINE_RTE-BovB 97201 97626 524 - . . scaffold1321 WUBlastX LINE_RTE-BovB 98364 98897 90 - . . scaffold1321 WUBlastX LINE_RTE-BovB 98900 98992 71 - . . scaffold1321 TRF Tandem_Repeat 99179 99307 95 + . . scaffold1321 TRF Tandem_Repeat 100322 100416 75 + . . scaffold1321 TRF Tandem_Repeat 103155 103825 639 + . . scaffold1321 WUBlastX DNA_NOF 118340 118651 33 - . . scaffold1321 TRF Tandem_Repeat 121334 121360 54 + . . scaffold1321 GLEAN mRNA 124908 130065 0.986166 - . ID=CGI_10010661; scaffold1321 WUBlastX DNA_Harbinger 124920 125093 56 - . . scaffold1321 WUBlastX LTR_Gypsy 129490 129996 25 - . . scaffold1321 WUBlastX LTR_Gypsy 129814 130011 29 - . . scaffold1321 GLEAN promoter 130066 131065 0.986166 - . ID=CGI_10010661; scaffold1321 TRF Tandem_Repeat 130930 130956 54 + . . scaffold1321 WUBlastX LTR_DIRS 134718 135176 275 - . . scaffold1321 WUBlastX LTR_DIRS 135176 135814 209 - . . scaffold1321 WUBlastX LTR_DIRS 135805 136101 197 - . . scaffold1321 WUBlastX LTR_DIRS 136083 136469 293 - . . scaffold1321 WUBlastX LTR_DIRS 136430 136555 30 - . . scaffold1321 WUBlastX LTR_Gypsy 136522 136689 45 - . . scaffold1321 GLEAN mRNA 136608 137201 1 - . ID=CGI_10010662; scaffold1321 WUBlastX LTR_Copia 136624 136761 41 - . . scaffold1321 WUBlastX LTR_DIRS 136803 137267 205 - . . scaffold1321 GLEAN promoter 137202 138201 1 - . ID=CGI_10010662; scaffold1321 TRF Tandem_Repeat 140720 140851 90 + . . scaffold1321 TRF Tandem_Repeat 140786 140851 69 + . . scaffold1321 GLEAN promoter 141277 142276 0.999372 + . ID=CGI_10010663; scaffold1321 GLEAN mRNA 142277 142471 0.999372 + . ID=CGI_10010663; scaffold1321 GLEAN promoter 143678 144677 0.544485 + . ID=CGI_10010664; scaffold1321 GLEAN mRNA 144678 167818 0.544485 + . ID=CGI_10010664; scaffold1321 TRF Tandem_Repeat 151229 151262 68 + . . scaffold1321 TRF Tandem_Repeat 151918 152104 141 + . . scaffold1321 TRF Tandem_Repeat 152001 152074 51 + . . scaffold1321 TRF Tandem_Repeat 155253 155403 126 + . . scaffold1321 WUBlastX LTR_Gypsy 160285 160395 32 - . . scaffold1321 WUBlastX LTR_Gypsy 160312 161376 736 - . . scaffold1321 WUBlastX LTR_Gypsy 160975 161472 161 - . . scaffold1321 WUBlastX LTR_Gypsy 161592 161657 34 - . . scaffold1321 WUBlastX DNA_TcMar-Tc1 170805 171563 391 - . . scaffold1321 WUBlastX DNA_TcMar-Tc1 170808 171722 109 - . . scaffold1321 WUBlastX DNA_TcMar-Tc1 171557 171772 27 - . . scaffold1321 TRF Tandem_Repeat 175532 175584 97 + . . scaffold1321 WUBlastX DNA_Merlin 189951 190844 346 + . . scaffold1321 TRF Tandem_Repeat 199465 199508 70 + . . scaffold1321 TRF Tandem_Repeat 222231 222295 94 + . . scaffold1321 TRF Tandem_Repeat 260526 260650 241 + . . scaffold1321 GLEAN promoter 268019 269018 1 + . ID=CGI_10010665; scaffold1321 GLEAN mRNA 269019 271470 1 + . ID=CGI_10010665; scaffold1322 GLEAN mRNA 9861 25007 0.962166 - . ID=CGI_10019460; scaffold1322 TRF Tandem_Repeat 11441 11495 110 + . . scaffold1322 GLEAN promoter 25008 26007 0.962166 - . ID=CGI_10019460; scaffold1322 GLEAN promoter 27376 28375 0.999667 + . ID=CGI_10019461; scaffold1322 GLEAN mRNA 28376 39814 0.999667 + . ID=CGI_10019461; scaffold1322 TRF Tandem_Repeat 50949 51031 157 + . . scaffold1322 TRF Tandem_Repeat 54787 54825 78 + . . scaffold1322 TRF Tandem_Repeat 61025 61054 51 + . . scaffold1322 GLEAN promoter 66617 67616 0.99372 + . ID=CGI_10019462; scaffold1322 GLEAN mRNA 67617 81438 0.99372 + . ID=CGI_10019462; scaffold1322 TRF Tandem_Repeat 71604 71764 234 + . . scaffold1322 TRF Tandem_Repeat 71634 71737 51 + . . scaffold1322 TRF Tandem_Repeat 81879 81941 81 + . . scaffold1322 TRF Tandem_Repeat 85873 85906 68 + . . scaffold1322 TRF Tandem_Repeat 88021 88065 90 + . . scaffold1322 TRF Tandem_Repeat 88493 88574 155 + . . scaffold1322 TRF Tandem_Repeat 104283 104341 91 + . . scaffold1322 TRF Tandem_Repeat 109405 109439 52 + . . scaffold1322 TRF Tandem_Repeat 112152 112203 88 + . . scaffold1322 GLEAN promoter 129696 130695 0.990978 + . ID=CGI_10019463; scaffold1322 GLEAN mRNA 130696 133423 0.990978 + . ID=CGI_10019463; scaffold1322 TRF Tandem_Repeat 133455 133635 240 + . . scaffold1322 TRF Tandem_Repeat 137072 137164 68 + . . scaffold1322 GLEAN promoter 140929 141928 1 + . ID=CGI_10019464; scaffold1322 GLEAN mRNA 141929 145467 1 + . ID=CGI_10019464; scaffold1322 TRF Tandem_Repeat 150184 150229 92 + . . scaffold1322 TRF Tandem_Repeat 158136 158169 59 + . . scaffold1322 TRF Tandem_Repeat 163520 163545 52 + . . scaffold1322 TRF Tandem_Repeat 171957 171994 60 + . . scaffold1322 TRF Tandem_Repeat 172189 172215 54 + . . scaffold1322 GLEAN promoter 173216 174215 0.754735 + . ID=CGI_10019465; scaffold1322 GLEAN mRNA 174216 176209 0.754735 + . ID=CGI_10019465; scaffold1322 TRF Tandem_Repeat 174917 174976 75 + . . scaffold1322 TRF Tandem_Repeat 175262 175297 63 + . . scaffold1322 TRF Tandem_Repeat 175365 175417 61 + . . scaffold1322 TRF Tandem_Repeat 175740 175772 66 + . . scaffold1322 TRF Tandem_Repeat 175764 175907 93 + . . scaffold1322 TRF Tandem_Repeat 175774 175904 79 + . . scaffold1322 GLEAN promoter 179325 180324 0.999372 + . ID=CGI_10019466; scaffold1322 GLEAN mRNA 180325 180762 0.999372 + . ID=CGI_10019466; scaffold1322 WUBlastX DNA_MuDR 181815 182024 48 + . . scaffold1322 TRF Tandem_Repeat 182865 182952 87 + . . scaffold1322 TRF Tandem_Repeat 185287 185689 354 + . . scaffold1322 TRF Tandem_Repeat 185712 185788 154 + . . scaffold1322 TRF Tandem_Repeat 187942 187967 52 + . . scaffold1322 GLEAN promoter 191179 192178 0.871492 + . ID=CGI_10019467; scaffold1322 GLEAN mRNA 192179 204571 0.871492 + . ID=CGI_10019467; scaffold1322 WUBlastX LINE_RTE-X 195180 195335 48 - . . scaffold1322 GLEAN promoter 203820 204819 0.998243 + . ID=CGI_10019468; scaffold1322 GLEAN mRNA 204820 205017 0.998243 + . ID=CGI_10019468; scaffold1322 GLEAN promoter 206175 207174 1 + . ID=CGI_10019469; scaffold1322 GLEAN mRNA 207175 210688 1 + . ID=CGI_10019469; scaffold1322 GLEAN mRNA 210926 227010 0.986206 - . ID=CGI_10019470; scaffold1322 TRF Tandem_Repeat 212916 212961 92 + . . scaffold1322 GLEAN promoter 227011 228010 0.986206 - . ID=CGI_10019470; scaffold1322 GLEAN mRNA 234644 241892 0.634119 - . ID=CGI_10019471; scaffold1322 GLEAN promoter 241893 242892 0.634119 - . ID=CGI_10019471; scaffold1322 WUBlastX DNA_IS4EU 246169 246372 96 - . . scaffold1322 WUBlastX DNA_IS4EU 246172 246408 67 - . . scaffold1322 WUBlastX DNA_Kolobok-IS4 246407 246535 61 - . . scaffold1322 WUBlastX DNA_IS4EU 246431 246634 67 - . . scaffold1322 WUBlastX DNA_Kolobok-IS4 247217 247417 33 + . . scaffold1322 WUBlastX DNA_IS4EU 247877 248089 72 + . . scaffold1322 WUBlastX DNA_IS4EU 247904 248512 63 + . . scaffold1322 TRF Tandem_Repeat 262061 262099 78 + . . scaffold1322 TRF Tandem_Repeat 262427 262459 66 + . . scaffold1322 WUBlastX LINE_RTE-X 263636 263809 52 + . . scaffold1322 WUBlastX LINE_RTE-X 263639 263770 65 + . . scaffold1322 GLEAN promoter 264135 265134 0.499623 + . ID=CGI_10019472; scaffold1322 GLEAN mRNA 265135 302274 0.499623 + . ID=CGI_10019472; scaffold1322 WUBlastX LINE_RTE-X 267480 267776 23 - . . scaffold1322 WUBlastX LINE_RTE-X 267513 267695 30 - . . scaffold1322 WUBlastX LTR_Gypsy 269916 270824 47 + . . scaffold1322 WUBlastX LTR_Gypsy 270078 270824 76 + . . scaffold1322 WUBlastX LTR_Gypsy-Cigr 270294 270842 120 + . . scaffold1322 WUBlastX LTR_Gypsy 270360 270824 123 + . . scaffold1322 TRF Tandem_Repeat 280893 281852 1385 + . . scaffold1322 TRF Tandem_Repeat 285353 285392 52 + . . scaffold1322 TRF Tandem_Repeat 285400 286200 1039 + . . scaffold1322 TRF Tandem_Repeat 290757 291145 698 + . . scaffold1322 WUBlastX LTR_Ngaro 298915 299025 69 - . . scaffold1322 WUBlastX LTR_Ngaro 299932 300048 49 - . . scaffold1322 WUBlastX LTR_Ngaro 300080 300526 250 - . . scaffold1322 WUBlastX LTR_Ngaro 301037 301159 50 - . . scaffold1322 WUBlastX LTR_Ngaro 301070 301465 97 - . . scaffold1322 WUBlastX LTR_Ngaro 301264 301572 71 - . . scaffold1322 WUBlastX LINE_RTE-X 308280 308588 140 + . . scaffold1322 WUBlastX LINE_RTE-BovB 309955 310356 256 - . . scaffold1322 WUBlastX LINE_RTE-BovB 310208 311071 435 - . . scaffold1322 WUBlastX LINE_RTE-BovB 310379 311047 502 - . . scaffold1322 WUBlastX LINE_RTE-BovB 311043 311555 281 - . . scaffold1322 WUBlastX LINE_RTE-BovB 311052 311459 317 - . . scaffold1322 TRF Tandem_Repeat 315684 315762 158 + . . scaffold1322 WUBlastX LINE_L1-Tx1 315897 316175 70 - . . scaffold1322 GLEAN mRNA 322287 330928 0.999369 - . ID=CGI_10019473; scaffold1322 TRF Tandem_Repeat 327454 327504 95 + . . scaffold1322 TRF Tandem_Repeat 327746 327810 130 + . . scaffold1322 GLEAN promoter 330929 331928 0.999369 - . ID=CGI_10019473; scaffold1322 GLEAN mRNA 331911 332546 0.999993 - . ID=CGI_10019474; scaffold1322 GLEAN promoter 332547 333546 0.999993 - . ID=CGI_10019474; scaffold1322 WUBlastX LINE_RTE-X 334502 334762 53 - . . scaffold1322 WUBlastX LINE_RTE-X 334565 334771 53 - . . scaffold1322 WUBlastX LINE_RTE-X 334607 334771 79 - . . scaffold1322 WUBlastX LINE_RTE-X 334843 335553 144 - . . scaffold1322 WUBlastX LINE_RTE-X 335550 335840 177 - . . scaffold1322 WUBlastX LINE_L1 335553 335912 31 - . . scaffold1322 WUBlastX LINE_L2 340733 341071 124 + . . scaffold1322 WUBlastX LINE_L2 340754 341206 42 + . . scaffold1322 WUBlastX LINE_CR1-L2 341182 341343 80 + . . scaffold1322 WUBlastX LINE_CR1-L2 341303 341653 79 + . . scaffold1322 WUBlastX LINE_CR1-L2 341309 341770 74 + . . scaffold1322 WUBlastX LTR_Ngaro 342548 343267 132 + . . scaffold1322 WUBlastX LTR_Ngaro 342653 343252 160 + . . scaffold1322 TRF Tandem_Repeat 343597 343687 137 + . . scaffold1322 TRF Tandem_Repeat 343597 343687 148 + . . scaffold1322 GLEAN mRNA 345731 346357 0.999999 - . ID=CGI_10019475; scaffold1322 GLEAN promoter 346358 347357 0.999999 - . ID=CGI_10019475; scaffold1322 WUBlastX LINE_RTE-X 358581 358961 83 - . . scaffold1322 WUBlastX LINE_RTE-X 358710 358958 95 - . . scaffold1322 WUBlastX DNA_TcMar-Tc1 359037 359141 22 + . . scaffold1322 WUBlastX DNA_TcMar-Tc1 359086 359511 35 + . . scaffold1322 WUBlastX DNA_TcMar-Tc1 359149 359505 131 + . . scaffold1322 WUBlastX DNA_TcMar-Tc1 359508 359624 81 + . . scaffold1322 WUBlastX DNA_TcMar-Tc1 359511 359699 41 + . . scaffold1322 WUBlastX DNA_hAT 362522 363178 110 + . . scaffold1322 WUBlastX DNA_hAT-Ac 362693 363247 143 + . . scaffold1322 WUBlastX DNA_hAT-Ac 362738 363184 191 + . . scaffold1322 WUBlastX DNA_hAT-Ac 363252 363527 67 + . . scaffold1322 WUBlastX DNA_hAT-Ac 363312 363725 123 + . . scaffold1322 WUBlastX DNA_hAT-Ac 363315 363821 66 + . . scaffold1322 WUBlastX DNA_hAT-Ac 363773 364138 49 + . . scaffold1322 WUBlastX DNA_hAT-Ac 364075 364275 94 + . . scaffold1322 WUBlastX DNA_hAT-Ac 364090 364371 28 + . . scaffold1322 WUBlastX DNA_hAT-Ac 364093 364317 55 + . . scaffold1322 WUBlastX DNA_Harbinger 364909 365388 170 - . . scaffold1322 WUBlastX DNA_Harbinger 364918 365241 195 - . . scaffold1322 GLEAN promoter 365517 366516 0.833191 + . ID=CGI_10019476; scaffold1322 TRF Tandem_Repeat 365977 366340 291 + . . scaffold1322 TRF Tandem_Repeat 365977 366348 336 + . . scaffold1322 GLEAN mRNA 366517 374727 0.833191 + . ID=CGI_10019476; scaffold1322 WUBlastX LINE_RTE-X 366937 368628 612 - . . scaffold1322 WUBlastX LINE_RTE-X 368622 368834 26 - . . scaffold1322 WUBlastX LINE_RTE-X 368634 368750 46 - . . scaffold1322 WUBlastX LINE_RTE-BovB 368649 368735 48 - . . scaffold1322 TRF Tandem_Repeat 370251 370309 118 + . . scaffold1322 WUBlastX DNA_PiggyBac 378499 378723 28 - . . scaffold1322 WUBlastX DNA_PiggyBac 378544 378783 62 - . . scaffold1322 WUBlastX DNA_PiggyBac 378559 378705 70 - . . scaffold1322 WUBlastX LINE_RTE-BovB 379652 379786 44 - . . scaffold1322 WUBlastX LINE_RTE-BovB 379756 379911 45 - . . scaffold1322 GLEAN mRNA 394198 409376 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Pao 405670 408018 1394 - . . scaffold1322 WUBlastX LTR_Pao 407979 408200 80 - . . scaffold1322 WUBlastX LTR_Pao 408233 408436 39 - . . scaffold1322 WUBlastX LTR_Pao 408242 408406 46 - . . scaffold1322 WUBlastX LTR_Pao 408846 409445 36 - . . scaffold1322 WUBlastX LTR_Pao 408951 409178 119 - . . scaffold1322 WUBlastX LTR_Pao 409177 409863 91 - . . scaffold1322 GLEAN promoter 409377 410376 0.999229 - . ID=CGI_10019477; scaffold1322 WUBlastX LTR_Ngaro 409863 410306 110 + . . scaffold1322 GLEAN mRNA 427994 443481 0.958613 - . ID=CGI_10019478; scaffold1322 TRF Tandem_Repeat 433192 433226 63 + . . scaffold1322 GLEAN promoter 443482 444481 0.958613 - . ID=CGI_10019478; scaffold1322 GLEAN promoter 445058 446057 0.593385 + . ID=CGI_10019479; scaffold1322 GLEAN mRNA 446058 449088 0.593385 + . ID=CGI_10019479; scaffold1322 GLEAN mRNA 452220 456368 0.999595 - . ID=CGI_10019480; scaffold1322 GLEAN promoter 453396 454395 1 + . ID=CGI_10019481; scaffold1322 GLEAN mRNA 454396 463606 1 + . ID=CGI_10019481; scaffold1322 GLEAN promoter 456369 457368 0.999595 - . ID=CGI_10019480; scaffold1322 WUBlastX DNA_IS4EU 463490 463570 49 + . . scaffold1322 GLEAN mRNA 469090 478831 0.810694 - . ID=CGI_10019482; scaffold1322 WUBlastX DNA_P 477702 477905 48 - . . scaffold1322 WUBlastX DNA_P 478325 478363 21 - . . scaffold1322 GLEAN promoter 478832 479831 0.810694 - . ID=CGI_10019482; scaffold1322 TRF Tandem_Repeat 483133 483157 50 + . . scaffold1322 TRF Tandem_Repeat 483983 484050 136 + . . scaffold1322 TRF Tandem_Repeat 485521 485575 101 + . . scaffold1322 TRF Tandem_Repeat 487194 487253 120 + . . scaffold1322 TRF Tandem_Repeat 487735 487789 101 + . . scaffold1322 TRF Tandem_Repeat 488334 488378 90 + . . scaffold1322 GLEAN promoter 514145 515144 0.581946 + . ID=CGI_10019483; scaffold1322 GLEAN mRNA 515145 561358 0.581946 + . ID=CGI_10019483; scaffold1322 GLEAN mRNA 524997 525248 0.618241 - . ID=CGI_10019484; scaffold1322 GLEAN promoter 525249 526248 0.618241 - . ID=CGI_10019484; scaffold1322 TRF Tandem_Repeat 533806 533834 58 + . . scaffold1322 TRF Tandem_Repeat 536167 536477 257 + . . scaffold1322 TRF Tandem_Repeat 536167 536452 317 + . . scaffold1322 GLEAN mRNA 569997 571235 0.558395 - . ID=CGI_10019485; scaffold1322 GLEAN promoter 571236 572235 0.558395 - . ID=CGI_10019485; scaffold1322 GLEAN mRNA 571511 590238 0.999351 - . ID=CGI_10019486; scaffold1322 TRF Tandem_Repeat 578876 578940 85 + . . scaffold1322 WUBlastX LTR_Ngaro 587512 587613 41 - . . scaffold1322 WUBlastX LTR_Ngaro 587851 588180 78 - . . scaffold1322 WUBlastX LTR_Ngaro 588288 588494 34 - . . scaffold1322 WUBlastX LTR_Ngaro 588359 588862 189 - . . scaffold1322 WUBlastX LTR_Ngaro 588850 589128 49 - . . scaffold1322 WUBlastX LTR_Ngaro 589444 590124 63 - . . scaffold1322 GLEAN promoter 590239 591238 0.999351 - . ID=CGI_10019486; scaffold1322 WUBlastX DNA_Maverick 601814 601930 63 - . . scaffold1322 TRF Tandem_Repeat 601996 602141 229 + . . scaffold1323 WUBlastX LTR_DIRS? 1518 2039 144 - . . scaffold1323 WUBlastX LTR_DIRS 1978 2295 158 - . . scaffold1323 WUBlastX LTR_DIRS 2689 3018 131 - . . scaffold1323 WUBlastX LTR_DIRS 3020 3547 210 - . . scaffold1323 WUBlastX LTR_DIRS 3547 3870 51 - . . scaffold1323 WUBlastX LTR_DIRS 3628 3885 73 - . . scaffold1323 WUBlastX LTR_Gypsy 3780 4325 95 - . . scaffold1323 WUBlastX LTR_DIRS 3879 4517 362 - . . scaffold1323 GLEAN promoter 4100 5099 0.182338 + . ID=CGI_10009080; scaffold1323 GLEAN mRNA 5100 53779 0.182338 + . ID=CGI_10009080; scaffold1323 WUBlastX LINE_Penelope 11484 11684 45 + . . scaffold1323 WUBlastX LINE_Penelope 11645 12085 133 + . . scaffold1323 WUBlastX LINE_Penelope 12096 12263 32 + . . scaffold1323 TRF Tandem_Repeat 14176 14210 70 + . . scaffold1323 TRF Tandem_Repeat 16963 16994 64 + . . scaffold1323 GLEAN mRNA 24733 25119 0.618241 - . ID=CGI_10009081; scaffold1323 WUBlastX DNA_Sola 24829 25218 93 - . . scaffold1323 GLEAN promoter 25120 26119 0.618241 - . ID=CGI_10009081; scaffold1323 TRF Tandem_Repeat 35642 35686 90 + . . scaffold1323 GLEAN promoter 61759 62758 0.99865 + . ID=CGI_10009082; scaffold1323 GLEAN mRNA 62759 90642 0.99865 + . ID=CGI_10009082; scaffold1323 WUBlastX DNA_MuDR 69790 70371 169 - . . scaffold1323 WUBlastX DNA_MuDR 70380 71000 140 - . . scaffold1323 TRF Tandem_Repeat 71086 71318 421 + . . scaffold1323 WUBlastX LTR_Ngaro 75513 75830 37 - . . scaffold1323 WUBlastX LTR_Ngaro 75690 75863 70 - . . scaffold1323 WUBlastX LTR_Ngaro 75844 76134 58 - . . scaffold1323 WUBlastX LTR_Ngaro 76122 76778 207 - . . scaffold1323 WUBlastX LTR_Ngaro 76762 76821 42 - . . scaffold1323 WUBlastX LTR_DIRS 77405 78091 69 - . . scaffold1323 WUBlastX LTR_Ngaro 77597 78112 305 - . . scaffold1323 WUBlastX LTR_Ngaro 78091 78486 63 - . . scaffold1323 TRF Tandem_Repeat 80331 80371 82 + . . scaffold1323 TRF Tandem_Repeat 83110 83151 84 + . . scaffold1323 TRF Tandem_Repeat 85905 85986 155 + . . scaffold1323 TRF Tandem_Repeat 87749 87804 78 + . . scaffold1323 GLEAN promoter 92052 93051 1 + . ID=CGI_10009084; scaffold1323 GLEAN mRNA 92299 96769 0.743057 - . ID=CGI_10009083; scaffold1323 GLEAN mRNA 93052 106567 1 + . ID=CGI_10009084; scaffold1323 GLEAN promoter 96770 97769 0.743057 - . ID=CGI_10009083; scaffold1323 GLEAN mRNA 116794 117522 1 - . ID=CGI_10009085; scaffold1323 GLEAN promoter 117523 118522 1 - . ID=CGI_10009085; scaffold1323 GLEAN mRNA 121201 122861 1 - . ID=CGI_10009086; scaffold1323 GLEAN promoter 122862 123861 1 - . ID=CGI_10009086; scaffold1323 TRF Tandem_Repeat 126364 126426 126 + . . scaffold1323 WUBlastX LINE_CR1-L2 131789 131863 39 + . . scaffold1323 WUBlastX LINE_L2 131812 132180 41 + . . scaffold1323 WUBlastX LINE_CR1-L2 131857 132123 88 + . . scaffold1323 TRF Tandem_Repeat 138533 138590 116 + . . scaffold1323 TRF Tandem_Repeat 140163 140197 70 + . . scaffold1323 GLEAN mRNA 156970 184989 0.472258 - . ID=CGI_10009087; scaffold1323 TRF Tandem_Repeat 157943 157975 59 + . . scaffold1323 TRF Tandem_Repeat 167664 169484 2040 + . . scaffold1323 TRF Tandem_Repeat 167664 169436 2009 + . . scaffold1323 TRF Tandem_Repeat 171748 171781 59 + . . scaffold1323 GLEAN promoter 184990 185989 0.472258 - . ID=CGI_10009087; scaffold1323 TRF Tandem_Repeat 185258 185325 118 + . . scaffold1323 GLEAN mRNA 190439 213355 0.99653 - . ID=CGI_10009088; scaffold1323 TRF Tandem_Repeat 193820 193917 178 + . . scaffold1323 TRF Tandem_Repeat 200507 200586 74 + . . scaffold1323 TRF Tandem_Repeat 200518 200603 98 + . . scaffold1323 TRF Tandem_Repeat 207883 207946 128 + . . scaffold1323 GLEAN promoter 213356 214355 0.99653 - . ID=CGI_10009088; scaffold1323 TRF Tandem_Repeat 213795 213836 84 + . . scaffold1323 GLEAN mRNA 214188 223101 0.531442 - . ID=CGI_10009089; scaffold1323 TRF Tandem_Repeat 220330 220354 50 + . . scaffold1323 TRF Tandem_Repeat 222228 222401 62 + . . scaffold1323 TRF Tandem_Repeat 222416 222863 574 + . . scaffold1323 TRF Tandem_Repeat 222536 222884 295 + . . scaffold1323 GLEAN promoter 223102 224101 0.531442 - . ID=CGI_10009089; scaffold1323 TRF Tandem_Repeat 223433 223643 327 + . . scaffold1324 GLEAN mRNA 2093 2365 0.733407 - . ID=CGI_10018370; scaffold1324 GLEAN promoter 2366 3365 0.733407 - . ID=CGI_10018370; scaffold1324 WUBlastX DNA_Harbinger 3074 3355 36 - . . scaffold1324 TRF Tandem_Repeat 12390 12469 78 + . . scaffold1324 TRF Tandem_Repeat 12390 12496 65 + . . scaffold1324 TRF Tandem_Repeat 13559 13609 102 + . . scaffold1324 GLEAN mRNA 14127 23793 0.98702 - . ID=CGI_10018371; scaffold1324 TRF Tandem_Repeat 16331 16384 108 + . . scaffold1324 WUBlastX LINE_Penelope 19636 19941 111 + . . scaffold1324 GLEAN promoter 22894 23893 0.999372 + . ID=CGI_10018372; scaffold1324 GLEAN promoter 23794 24793 0.98702 - . ID=CGI_10018371; scaffold1324 GLEAN mRNA 23894 24079 0.999372 + . ID=CGI_10018372; scaffold1324 TRF Tandem_Repeat 28604 30315 1750 + . . scaffold1324 TRF Tandem_Repeat 28604 30315 1907 + . . scaffold1324 TRF Tandem_Repeat 30561 30683 93 + . . scaffold1324 TRF Tandem_Repeat 31600 31671 137 + . . scaffold1324 TRF Tandem_Repeat 33926 33991 132 + . . scaffold1324 TRF Tandem_Repeat 34658 34812 294 + . . scaffold1324 GLEAN mRNA 34984 39981 1 - . ID=CGI_10018373; scaffold1324 GLEAN promoter 39982 40981 1 - . ID=CGI_10018373; scaffold1324 GLEAN promoter 40327 41326 0.920529 + . ID=CGI_10018374; scaffold1324 GLEAN mRNA 41327 44272 0.920529 + . ID=CGI_10018374; scaffold1324 GLEAN promoter 45140 46139 0.808329 + . ID=CGI_10018375; scaffold1324 GLEAN mRNA 46140 69010 0.808329 + . ID=CGI_10018375; scaffold1324 TRF Tandem_Repeat 48432 48849 631 + . . scaffold1324 TRF Tandem_Repeat 62392 63111 1039 + . . scaffold1324 TRF Tandem_Repeat 62403 63111 1032 + . . scaffold1324 TRF Tandem_Repeat 64145 64198 108 + . . scaffold1324 TRF Tandem_Repeat 65499 65525 54 + . . scaffold1324 TRF Tandem_Repeat 72459 72625 201 + . . scaffold1324 TRF Tandem_Repeat 75623 75865 380 + . . scaffold1324 GLEAN mRNA 76324 77277 0.412771 - . ID=CGI_10018376; scaffold1324 GLEAN promoter 77278 78277 0.412771 - . ID=CGI_10018376; scaffold1324 GLEAN promoter 77923 78922 0.782344 + . ID=CGI_10018377; scaffold1324 TRF Tandem_Repeat 78697 78726 51 + . . scaffold1324 GLEAN mRNA 78923 84528 0.782344 + . ID=CGI_10018377; scaffold1324 GLEAN promoter 84495 85494 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 84761 85127 592 + . . scaffold1324 GLEAN mRNA 85495 114276 0.507528 + . ID=CGI_10018378; scaffold1324 TRF Tandem_Repeat 85626 86104 548 + . . scaffold1324 TRF Tandem_Repeat 85772 86104 422 + . . scaffold1324 TRF Tandem_Repeat 88385 88658 383 + . . scaffold1324 TRF Tandem_Repeat 89267 89759 611 + . . scaffold1324 TRF Tandem_Repeat 89278 89732 253 + . . scaffold1324 TRF Tandem_Repeat 91290 91651 347 + . . scaffold1324 TRF Tandem_Repeat 93868 94988 1503 + . . scaffold1324 TRF Tandem_Repeat 93963 94096 68 + . . scaffold1324 TRF Tandem_Repeat 93990 94121 75 + . . scaffold1324 GLEAN mRNA 99156 100558 0.648545 - . ID=CGI_10018379; scaffold1324 GLEAN promoter 100559 101558 0.648545 - . ID=CGI_10018379; scaffold1324 TRF Tandem_Repeat 107750 107830 162 + . . scaffold1324 TRF Tandem_Repeat 107841 107872 64 + . . scaffold1324 TRF Tandem_Repeat 107870 107896 54 + . . scaffold1324 GLEAN mRNA 119144 120055 0.991245 - . ID=CGI_10018380; scaffold1324 GLEAN promoter 120056 121055 0.991245 - . ID=CGI_10018380; scaffold1324 TRF Tandem_Repeat 122601 122652 104 + . . scaffold1324 GLEAN promoter 133871 134870 0.997654 + . ID=CGI_10018381; scaffold1324 GLEAN mRNA 134871 152575 0.997654 + . ID=CGI_10018381; scaffold1324 TRF Tandem_Repeat 135614 137345 1732 + . . scaffold1324 GLEAN mRNA 140735 151412 0.841132 - . ID=CGI_10018382; scaffold1324 TRF Tandem_Repeat 145128 145495 607 + . . scaffold1324 GLEAN promoter 151413 152412 0.841132 - . ID=CGI_10018382; scaffold1324 TRF Tandem_Repeat 152153 152191 78 + . . scaffold1324 GLEAN promoter 153344 154343 0.999364 + . ID=CGI_10018383; scaffold1324 GLEAN mRNA 154344 168009 0.999364 + . ID=CGI_10018383; scaffold1324 TRF Tandem_Repeat 164658 164880 331 + . . scaffold1324 TRF Tandem_Repeat 170649 170694 83 + . . scaffold1324 TRF Tandem_Repeat 170897 171778 1405 + . . scaffold1324 GLEAN promoter 172849 173848 0.999286 + . ID=CGI_10018384; scaffold1324 TRF Tandem_Repeat 173508 173535 56 + . . scaffold1324 GLEAN mRNA 173849 182760 0.999286 + . ID=CGI_10018384; scaffold1324 TRF Tandem_Repeat 174066 174096 53 + . . scaffold1324 TRF Tandem_Repeat 175898 176323 640 + . . scaffold1324 GLEAN mRNA 183262 188739 0.996934 - . ID=CGI_10018385; scaffold1324 GLEAN promoter 188740 189739 0.996934 - . ID=CGI_10018385; scaffold1324 GLEAN promoter 188836 189835 1 + . ID=CGI_10018386; scaffold1324 GLEAN mRNA 189836 196791 1 + . ID=CGI_10018386; scaffold1324 TRF Tandem_Repeat 192534 192599 132 + . . scaffold1324 TRF Tandem_Repeat 193174 193274 139 + . . scaffold1324 GLEAN mRNA 201737 205536 0.999996 - . ID=CGI_10018387; scaffold1324 GLEAN promoter 205537 206536 0.999996 - . ID=CGI_10018387; scaffold1324 TRF Tandem_Repeat 206017 206205 127 + . . scaffold1324 TRF Tandem_Repeat 206017 206204 198 + . . scaffold1324 TRF Tandem_Repeat 206203 206373 207 + . . scaffold1324 TRF Tandem_Repeat 207151 207194 88 + . . scaffold1324 TRF Tandem_Repeat 210252 210546 437 + . . scaffold1324 TRF Tandem_Repeat 211478 211785 287 + . . scaffold1324 TRF Tandem_Repeat 211886 211928 77 + . . scaffold1324 TRF Tandem_Repeat 212153 212557 447 + . . scaffold1324 GLEAN promoter 212494 213493 1 + . ID=CGI_10018388; scaffold1324 GLEAN mRNA 213494 214792 1 + . ID=CGI_10018388; scaffold1324 GLEAN promoter 220835 221834 0.743564 + . ID=CGI_10018389; scaffold1324 GLEAN mRNA 221835 223738 0.743564 + . ID=CGI_10018389; scaffold1324 TRF Tandem_Repeat 224934 225012 81 + . . scaffold1324 TRF Tandem_Repeat 224934 225013 60 + . . scaffold1324 TRF Tandem_Repeat 224935 224979 63 + . . scaffold1324 GLEAN promoter 225449 226448 0.664878 + . ID=CGI_10018390; scaffold1324 GLEAN mRNA 226449 231683 0.664878 + . ID=CGI_10018390; scaffold1324 TRF Tandem_Repeat 231833 231875 59 + . . scaffold1324 GLEAN mRNA 232720 253865 0.999351 - . ID=CGI_10018391; scaffold1324 TRF Tandem_Repeat 233894 234513 1006 + . . scaffold1324 TRF Tandem_Repeat 235409 235492 141 + . . scaffold1324 TRF Tandem_Repeat 240122 240482 560 + . . scaffold1324 TRF Tandem_Repeat 246663 246719 114 + . . scaffold1324 TRF Tandem_Repeat 248576 249321 974 + . . scaffold1324 GLEAN promoter 253866 254865 0.999351 - . ID=CGI_10018391; scaffold1324 GLEAN mRNA 260410 260847 1 - . ID=CGI_10018392; scaffold1324 GLEAN promoter 260848 261847 1 - . ID=CGI_10018392; scaffold1324 TRF Tandem_Repeat 261034 261102 111 + . . scaffold1324 WUBlastX LTR_Gypsy 263274 263456 23 + . . scaffold1324 WUBlastX LTR_Gypsy-Cigr 263313 264734 788 + . . scaffold1324 GLEAN promoter 263782 264781 0.999964 + . ID=CGI_10018393; scaffold1324 GLEAN mRNA 264782 265423 0.999964 + . ID=CGI_10018393; scaffold1324 WUBlastX LTR_Gypsy 265614 265751 21 + . . scaffold1324 WUBlastX LTR_Gypsy 266229 266675 277 + . . scaffold1324 WUBlastX LTR_Gypsy 266256 266756 210 + . . scaffold1324 WUBlastX LTR_Gypsy 266271 266849 204 + . . scaffold1324 TRF Tandem_Repeat 268482 268581 200 + . . scaffold1324 TRF Tandem_Repeat 269719 269769 93 + . . scaffold1324 TRF Tandem_Repeat 270349 270382 68 + . . scaffold1324 TRF Tandem_Repeat 271076 271125 66 + . . scaffold1324 TRF Tandem_Repeat 276743 276782 80 + . . scaffold1324 WUBlastX DNA_IS4EU 282739 282828 64 + . . scaffold1324 WUBlastX DNA_IS4EU 283097 283198 40 + . . scaffold1324 WUBlastX DNA_IS4EU 283100 283183 52 + . . scaffold1324 WUBlastX DNA_Kolobok-IS4 283696 283977 61 + . . scaffold1324 WUBlastX DNA_Kolobok-IS4 283965 284381 28 + . . scaffold1324 WUBlastX LINE_CR1 284478 284585 29 + . . scaffold1324 WUBlastX DNA_IS4EU 284947 285351 133 - . . scaffold1324 WUBlastX DNA_IS4EU 285034 285405 202 - . . scaffold1324 WUBlastX DNA_IS4EU 285067 285684 136 - . . scaffold1324 TRF Tandem_Repeat 286453 287310 1145 + . . scaffold1324 TRF Tandem_Repeat 294369 294775 616 + . . scaffold1324 GLEAN mRNA 297030 309822 0.831429 - . ID=CGI_10018394; scaffold1324 GLEAN promoter 309823 310822 0.831429 - . ID=CGI_10018394; scaffold1324 GLEAN mRNA 312434 327926 0.84986 - . ID=CGI_10018395; scaffold1324 TRF Tandem_Repeat 314310 315364 1090 + . . scaffold1324 TRF Tandem_Repeat 321393 321438 92 + . . scaffold1324 TRF Tandem_Repeat 322882 322935 92 + . . scaffold1324 WUBlastX DNA_TcMar-Tc1 323866 324840 318 + . . scaffold1324 GLEAN promoter 327927 328926 0.84986 - . ID=CGI_10018395; scaffold1324 TRF Tandem_Repeat 337472 337650 103 + . . scaffold1324 TRF Tandem_Repeat 339915 339970 94 + . . scaffold1324 TRF Tandem_Repeat 345003 345053 84 + . . scaffold1324 TRF Tandem_Repeat 345007 345056 73 + . . scaffold1324 TRF Tandem_Repeat 345162 345201 80 + . . scaffold1324 TRF Tandem_Repeat 345371 345421 95 + . . scaffold1324 TRF Tandem_Repeat 346295 346492 193 + . . scaffold1324 TRF Tandem_Repeat 346295 346493 62 + . . scaffold1324 WUBlastX DNA_TcMar-Pogo 350738 350986 104 + . . scaffold1324 WUBlastX DNA_TcMar-Pogo 350804 351001 124 + . . scaffold1324 TRF Tandem_Repeat 352639 352694 112 + . . scaffold1324 TRF Tandem_Repeat 353017 353206 193 + . . scaffold1324 GLEAN promoter 353089 354088 1 + . ID=CGI_10018396; scaffold1324 GLEAN mRNA 354089 362762 1 + . ID=CGI_10018396; scaffold1324 GLEAN mRNA 364499 366631 0.966707 - . ID=CGI_10018397; scaffold1324 GLEAN promoter 366632 367631 0.966707 - . ID=CGI_10018397; scaffold1324 TRF Tandem_Repeat 367359 367434 152 + . . scaffold1324 TRF Tandem_Repeat 369610 369661 104 + . . scaffold1324 TRF Tandem_Repeat 370882 370931 100 + . . scaffold1324 TRF Tandem_Repeat 375851 375905 101 + . . scaffold1324 GLEAN promoter 387854 388853 0.593391 + . ID=CGI_10018398; scaffold1324 GLEAN mRNA 388854 394271 0.593391 + . ID=CGI_10018398; scaffold1324 TRF Tandem_Repeat 403579 403623 81 + . . scaffold1324 TRF Tandem_Repeat 405168 405209 84 + . . scaffold1324 TRF Tandem_Repeat 405999 406030 64 + . . scaffold1324 TRF Tandem_Repeat 414790 414836 94 + . . scaffold1324 TRF Tandem_Repeat 415685 415721 74 + . . scaffold1324 TRF Tandem_Repeat 445615 445648 68 + . . scaffold1324 TRF Tandem_Repeat 454920 455048 123 + . . scaffold1324 TRF Tandem_Repeat 455117 455257 140 + . . scaffold1324 WUBlastX LTR_Gypsy 462154 462261 36 - . . scaffold1324 WUBlastX LTR_Gypsy 462199 463122 76 - . . scaffold1324 WUBlastX LTR_Gypsy 462517 463092 106 - . . scaffold1324 WUBlastX LTR_Gypsy 462607 463269 161 - . . scaffold1324 WUBlastX LTR_Gypsy 462625 463557 107 - . . scaffold1324 WUBlastX LTR_Gypsy 463737 465137 392 - . . scaffold1324 WUBlastX LTR_Gypsy 463998 465056 420 - . . scaffold1324 WUBlastX LTR_Gypsy-Cigr 465199 465603 32 - . . scaffold1324 WUBlastX LTR_Gypsy 465199 465366 38 - . . scaffold1324 WUBlastX LTR_Gypsy 465205 465402 35 - . . scaffold1324 WUBlastX LTR_Gypsy 465226 465306 41 - . . scaffold1324 WUBlastX LTR_Gypsy 465648 465746 24 - . . scaffold1324 WUBlastX DNA_TcMar-Tc1 469261 470067 280 - . . scaffold1324 GLEAN mRNA 471372 478263 0.634914 - . ID=CGI_10018399; scaffold1324 GLEAN promoter 478264 479263 0.634914 - . ID=CGI_10018399; scaffold1324 TRF Tandem_Repeat 484184 484217 68 + . . scaffold1324 GLEAN mRNA 489112 490317 0.506571 - . ID=CGI_10018400; scaffold1324 GLEAN promoter 490318 491317 0.506571 - . ID=CGI_10018400; scaffold1324 TRF Tandem_Repeat 491488 491543 112 + . . scaffold1324 GLEAN promoter 498946 499945 0.733411 + . ID=CGI_10018401; scaffold1324 GLEAN mRNA 499946 500659 0.733411 + . ID=CGI_10018401; scaffold1324 GLEAN mRNA 504763 511203 0.412327 - . ID=CGI_10018402; scaffold1324 GLEAN promoter 511204 512203 0.412327 - . ID=CGI_10018402; scaffold1324 GLEAN mRNA 511417 525497 0.972343 - . ID=CGI_10018403; scaffold1324 TRF Tandem_Repeat 523037 523132 178 + . . scaffold1324 GLEAN promoter 525498 526497 0.972343 - . ID=CGI_10018403; scaffold1324 GLEAN promoter 538413 539412 0.999638 + . ID=CGI_10018404; scaffold1324 GLEAN mRNA 539413 540291 0.999638 + . ID=CGI_10018404; scaffold1324 TRF Tandem_Repeat 541013 541052 80 + . . scaffold1327 TRF Tandem_Repeat 1549 1692 114 + . . scaffold1327 TRF Tandem_Repeat 2651 3103 418 + . . scaffold1327 TRF Tandem_Repeat 2661 3092 412 + . . scaffold1327 TRF Tandem_Repeat 2661 3100 340 + . . scaffold1327 TRF Tandem_Repeat 3646 3777 63 + . . scaffold1327 TRF Tandem_Repeat 10281 10320 53 + . . scaffold1327 TRF Tandem_Repeat 11206 11251 74 + . . scaffold1327 TRF Tandem_Repeat 50501 50873 548 + . . scaffold1327 TRF Tandem_Repeat 51175 51433 491 + . . scaffold1327 TRF Tandem_Repeat 53366 53422 105 + . . scaffold1327 TRF Tandem_Repeat 54720 55013 401 + . . scaffold1327 TRF Tandem_Repeat 61067 61110 79 + . . scaffold1327 TRF Tandem_Repeat 64480 64534 110 + . . scaffold1327 TRF Tandem_Repeat 65691 65747 114 + . . scaffold1327 TRF Tandem_Repeat 81446 83534 1643 + . . scaffold1327 GLEAN promoter 84190 85189 0.88611 + . ID=CGI_10014336; scaffold1327 GLEAN mRNA 85190 108876 0.88611 + . ID=CGI_10014336; scaffold1327 TRF Tandem_Repeat 88733 88964 401 + . . scaffold1327 TRF Tandem_Repeat 93501 93536 72 + . . scaffold1327 TRF Tandem_Repeat 94619 94831 277 + . . scaffold1327 TRF Tandem_Repeat 97307 97356 57 + . . scaffold1327 TRF Tandem_Repeat 99776 100322 713 + . . scaffold1327 TRF Tandem_Repeat 100893 101053 231 + . . scaffold1327 TRF Tandem_Repeat 103822 104027 412 + . . scaffold1327 TRF Tandem_Repeat 106441 106839 629 + . . scaffold1327 TRF Tandem_Repeat 111699 111729 62 + . . scaffold1327 TRF Tandem_Repeat 111832 111880 82 + . . scaffold1327 TRF Tandem_Repeat 112072 112125 83 + . . scaffold1327 GLEAN promoter 114470 115469 0.579587 + . ID=CGI_10014337; scaffold1327 GLEAN mRNA 115470 125797 0.579587 + . ID=CGI_10014337; scaffold1327 TRF Tandem_Repeat 118157 118228 144 + . . scaffold1327 TRF Tandem_Repeat 123320 123578 284 + . . scaffold1327 TRF Tandem_Repeat 123324 123510 190 + . . scaffold1327 GLEAN mRNA 126411 130745 0.999999 - . ID=CGI_10014338; scaffold1327 TRF Tandem_Repeat 128229 128590 393 + . . scaffold1327 TRF Tandem_Repeat 128874 128915 84 + . . scaffold1327 GLEAN promoter 130746 131745 0.999999 - . ID=CGI_10014338; scaffold1327 GLEAN promoter 133151 134150 0.999138 + . ID=CGI_10014339; scaffold1327 GLEAN mRNA 134151 148545 0.999138 + . ID=CGI_10014339; scaffold1327 TRF Tandem_Repeat 135470 135683 198 + . . scaffold1327 TRF Tandem_Repeat 145298 145449 125 + . . scaffold1327 TRF Tandem_Repeat 150268 150301 50 + . . scaffold1327 GLEAN promoter 157348 158347 0.802379 + . ID=CGI_10014340; scaffold1327 TRF Tandem_Repeat 157862 157963 111 + . . scaffold1327 GLEAN mRNA 158348 178666 0.802379 + . ID=CGI_10014340; scaffold1327 TRF Tandem_Repeat 167872 167927 60 + . . scaffold1327 TRF Tandem_Repeat 167873 167934 63 + . . scaffold1327 TRF Tandem_Repeat 169850 169914 130 + . . scaffold1327 TRF Tandem_Repeat 170794 170821 56 + . . scaffold1327 GLEAN promoter 179097 180096 0.600145 + . ID=CGI_10014341; scaffold1327 GLEAN mRNA 180097 196030 0.600145 + . ID=CGI_10014341; scaffold1327 TRF Tandem_Repeat 193139 193205 53 + . . scaffold1327 WUBlastX LINE_RTE-X 193442 193636 104 + . . scaffold1327 TRF Tandem_Repeat 195643 195685 86 + . . scaffold1327 GLEAN mRNA 203991 211678 0.999675 - . ID=CGI_10014342; scaffold1327 GLEAN promoter 211679 212678 0.999675 - . ID=CGI_10014342; scaffold1327 WUBlastX LTR_Gypsy 216658 216738 21 - . . scaffold1327 WUBlastX LTR_Gypsy 217048 217128 26 - . . scaffold1327 WUBlastX LTR_Gypsy 217256 217546 77 - . . scaffold1327 WUBlastX LTR_Gypsy 217304 217540 188 - . . scaffold1327 WUBlastX LTR_Gypsy 217310 217618 167 - . . scaffold1327 WUBlastX LTR_Gypsy 217600 218916 882 - . . scaffold1327 WUBlastX LTR_Gypsy 218095 219432 187 - . . scaffold1327 WUBlastX LTR_Gypsy 218113 219063 278 - . . scaffold1327 WUBlastX LTR_Gypsy 219352 219582 53 - . . scaffold1327 WUBlastX LTR_Gypsy 219352 219642 36 - . . scaffold1327 WUBlastX LINE_RTE-X 226974 227282 57 - . . scaffold1327 TRF Tandem_Repeat 229559 230273 514 + . . scaffold1327 TRF Tandem_Repeat 229559 230273 625 + . . scaffold1327 GLEAN mRNA 232034 235158 0.946692 - . ID=CGI_10014343; scaffold1327 GLEAN promoter 235159 236158 0.946692 - . ID=CGI_10014343; scaffold1327 TRF Tandem_Repeat 241012 241043 55 + . . scaffold1327 TRF Tandem_Repeat 241538 241571 68 + . . scaffold1327 TRF Tandem_Repeat 241569 241601 66 + . . scaffold1327 TRF Tandem_Repeat 241789 241837 98 + . . scaffold1327 TRF Tandem_Repeat 244225 244298 103 + . . scaffold1327 GLEAN mRNA 244585 249562 1 - . ID=CGI_10014344; scaffold1327 TRF Tandem_Repeat 245986 246043 116 + . . scaffold1327 GLEAN promoter 249563 250562 1 - . ID=CGI_10014344; scaffold1327 GLEAN mRNA 250166 279158 0.863216 - . ID=CGI_10014345; scaffold1327 TRF Tandem_Repeat 273465 273620 303 + . . scaffold1327 TRF Tandem_Repeat 273471 273600 62 + . . scaffold1327 TRF Tandem_Repeat 278935 278960 52 + . . scaffold1327 GLEAN promoter 279159 280158 0.863216 - . ID=CGI_10014345; scaffold1327 TRF Tandem_Repeat 279530 279562 66 + . . scaffold1327 WUBlastX RC_Helitron 282945 283460 66 + . . scaffold1327 WUBlastX LINE_Penelope 283411 284328 149 + . . scaffold1327 WUBlastX LINE_Penelope 283495 284217 353 + . . scaffold1327 WUBlastX LINE_Penelope 284210 284371 37 + . . scaffold1327 WUBlastX LINE_Penelope 284261 284398 23 + . . scaffold1327 WUBlastX LINE_Penelope 284397 285200 449 + . . scaffold1327 WUBlastX LINE_Penelope 285241 285636 140 + . . scaffold1327 TRF Tandem_Repeat 291894 292139 357 + . . scaffold1327 WUBlastX LINE_L1-Tx1 293691 294122 23 - . . scaffold1327 WUBlastX LINE_L1-Tx1 293934 294224 23 - . . scaffold1327 WUBlastX LINE_L1 293934 294173 50 - . . scaffold1327 WUBlastX LINE_L1-Tx1 294319 294510 24 - . . scaffold1327 WUBlastX LINE_L1-Tx1 294730 294951 99 - . . scaffold1327 WUBlastX LINE_L1-Tx1 294944 295312 70 - . . scaffold1327 WUBlastX LINE_L1-Tx1 295421 295663 91 - . . scaffold1327 WUBlastX LINE_L1 295424 295714 33 - . . scaffold1327 WUBlastX LINE_L1-Tx1 295735 295821 25 - . . scaffold1327 WUBlastX DNA_Kolobok-IS4 300059 300256 54 + . . scaffold1327 WUBlastX DNA_IS4EU 300092 300289 25 + . . scaffold1327 WUBlastX DNA_Kolobok-IS4 301183 301629 65 + . . scaffold1327 WUBlastX DNA_IS4EU 301291 301629 113 + . . scaffold1327 WUBlastX DNA_IS4EU 301607 301753 37 + . . scaffold1327 GLEAN mRNA 319834 319989 0.618241 - . ID=CGI_10014346; scaffold1327 GLEAN promoter 319990 320989 0.618241 - . ID=CGI_10014346; scaffold1327 WUBlastX LTR_Gypsy 327795 328169 67 + . . scaffold1327 WUBlastX LTR_Gypsy 328628 328840 46 + . . scaffold1327 WUBlastX LTR_Gypsy-Cigr 328679 329020 106 + . . scaffold1327 WUBlastX LTR_Gypsy 328706 329302 69 + . . scaffold1327 WUBlastX LTR_Gypsy-Cigr 329359 330177 416 + . . scaffold1327 WUBlastX LTR_Gypsy 329560 330393 303 + . . scaffold1327 WUBlastX LTR_Gypsy 330378 330671 154 + . . scaffold1327 WUBlastX LTR_Gypsy-Cigr 330378 330605 160 + . . scaffold1327 WUBlastX LTR_Gypsy 330818 331129 43 + . . scaffold1327 WUBlastX LTR_Gypsy 331013 331156 47 + . . scaffold1327 WUBlastX LTR_Gypsy 331135 331722 173 + . . scaffold1327 WUBlastX LTR_Gypsy 331297 332157 74 + . . scaffold1327 WUBlastX LTR_Gypsy-Cigr 331300 331929 211 + . . scaffold1327 WUBlastX LTR_Gypsy 331303 331794 334 + . . scaffold1327 WUBlastX DNA 333539 334297 105 - . . scaffold1327 WUBlastX DNA_Zator 333806 334294 170 - . . scaffold1327 WUBlastX DNA_Zator 334303 335088 439 - . . scaffold1327 WUBlastX DNA_Zator 335126 335962 73 - . . scaffold1327 WUBlastX DNA_Zator 336018 336110 21 - . . scaffold1327 WUBlastX DNA_IS4EU 346412 346558 35 - . . scaffold1327 WUBlastX DNA_Kolobok-IS4 346554 346805 29 - . . scaffold1327 WUBlastX DNA_Kolobok-IS4 346612 346716 38 - . . scaffold1327 WUBlastX DNA_IS4EU 346624 346701 62 - . . scaffold1327 WUBlastX DNA_IS4EU 346630 346767 30 - . . scaffold1327 TRF Tandem_Repeat 346894 347852 1390 + . . scaffold1327 WUBlastX DNA_IS4EU 347870 348160 70 - . . scaffold1327 WUBlastX LINE_L2 348658 348933 33 + . . scaffold1327 WUBlastX LINE_L2 348721 349191 37 + . . scaffold1327 WUBlastX LINE_CR1-L2 348727 348924 77 + . . scaffold1327 GLEAN mRNA 359858 360380 0.557138 - . ID=CGI_10014347; scaffold1327 GLEAN promoter 360381 361380 0.557138 - . ID=CGI_10014347; scaffold1327 TRF Tandem_Repeat 362868 363721 1330 + . . scaffold1327 GLEAN promoter 375430 376429 0.499545 + . ID=CGI_10014348; scaffold1327 TRF Tandem_Repeat 375740 376126 638 + . . scaffold1327 GLEAN mRNA 376430 386645 0.499545 + . ID=CGI_10014348; scaffold1327 TRF Tandem_Repeat 392458 392549 175 + . . scaffold1328 TRF Tandem_Repeat 9840 9889 55 + . . scaffold1328 WUBlastX LTR_Gypsy 12828 13094 28 + . . scaffold1328 WUBlastX DNA_Maverick 13845 14240 142 + . . scaffold1328 WUBlastX DNA_Maverick 13917 14240 222 + . . scaffold1328 WUBlastX DNA_Maverick 17749 19260 119 + . . scaffold1328 WUBlastX DNA_Maverick 18583 20100 215 + . . scaffold1328 WUBlastX DNA_Maverick 18952 20064 276 + . . scaffold1328 WUBlastX DNA_Maverick 19135 20109 298 + . . scaffold1328 WUBlastX DNA_Maverick 19321 20100 336 + . . scaffold1328 WUBlastX DNA_Maverick 20122 20412 75 + . . scaffold1328 WUBlastX DNA_Maverick 20212 20457 118 + . . scaffold1328 WUBlastX DNA_Maverick 20566 20703 31 + . . scaffold1328 WUBlastX DNA_Maverick 20587 20703 50 + . . scaffold1328 WUBlastX DNA_Maverick 20721 22184 975 + . . scaffold1328 WUBlastX DNA_Maverick 22900 23517 325 - . . scaffold1328 WUBlastX DNA_Maverick 23716 24171 160 - . . scaffold1328 WUBlastX DNA_Maverick 24180 25430 628 - . . scaffold1328 GLEAN mRNA 25467 25925 0.998484 - . ID=CGI_10012985; scaffold1328 GLEAN promoter 25926 26925 0.998484 - . ID=CGI_10012985; scaffold1328 WUBlastX DNA_Maverick 26003 26284 81 - . . scaffold1328 WUBlastX DNA_Maverick 26003 26392 61 - . . scaffold1328 WUBlastX DNA_Maverick 26003 26233 96 - . . scaffold1328 WUBlastX DNA_Maverick 26452 27654 499 - . . scaffold1328 TRF Tandem_Repeat 29111 29186 116 + . . scaffold1328 TRF Tandem_Repeat 29884 30041 289 + . . scaffold1328 WUBlastX DNA_Maverick 33156 33401 58 - . . scaffold1328 WUBlastX DNA_Maverick 33213 33401 85 - . . scaffold1328 WUBlastX DNA_Maverick 33406 33456 33 - . . scaffold1328 WUBlastX DNA_Maverick 33962 34114 45 - . . scaffold1328 TRF Tandem_Repeat 41625 42547 1497 + . . scaffold1328 WUBlastX LTR_Gypsy 43514 44128 184 + . . scaffold1328 WUBlastX LTR_Gypsy 44111 47200 2116 + . . scaffold1328 WUBlastX LTR_Gypsy 46334 47356 142 + . . scaffold1328 WUBlastX LTR_Gypsy 47208 47561 70 + . . scaffold1328 WUBlastX LTR_Gypsy 47208 47651 67 + . . scaffold1328 WUBlastX LTR_Gypsy 47208 47483 96 + . . scaffold1328 WUBlastX LTR_Gypsy 47208 47768 37 + . . scaffold1328 WUBlastX LTR_Ngaro 58721 58843 43 + . . scaffold1328 WUBlastX LTR_Ngaro 58745 58828 45 + . . scaffold1328 WUBlastX LTR_Ngaro 58840 58947 31 + . . scaffold1328 WUBlastX LTR_Ngaro 58890 59237 82 + . . scaffold1328 WUBlastX LTR_Ngaro 58890 59171 104 + . . scaffold1328 WUBlastX LTR_Ngaro 59171 59296 23 + . . scaffold1328 WUBlastX LTR_Ngaro 59171 59272 26 + . . scaffold1328 WUBlastX LTR_Ngaro 59174 59335 22 + . . scaffold1328 WUBlastX LTR_Gypsy 61261 61683 242 + . . scaffold1328 WUBlastX LTR_Gypsy 61342 61746 119 + . . scaffold1328 WUBlastX LTR_Gypsy 61746 61943 92 + . . scaffold1328 WUBlastX LTR_Gypsy 61773 61931 97 + . . scaffold1328 WUBlastX LTR_Gypsy 61779 62009 21 + . . scaffold1328 TRF Tandem_Repeat 62386 62417 64 + . . scaffold1328 WUBlastX LTR_Gypsy 64017 64349 89 - . . scaffold1328 WUBlastX LTR_Gypsy 64074 64340 210 - . . scaffold1328 WUBlastX LTR_Gypsy-Cigr 64143 65006 295 - . . scaffold1328 WUBlastX LTR_Gypsy 64302 66263 535 - . . scaffold1328 WUBlastX LTR_Gypsy 64950 66512 257 - . . scaffold1328 WUBlastX DNA_Harbinger 69335 70333 338 + . . scaffold1328 WUBlastX DNA_Harbinger 70121 70423 34 + . . scaffold1328 TRF Tandem_Repeat 83819 83853 56 + . . scaffold1328 GLEAN promoter 89672 90671 0.976468 + . ID=CGI_10012986; scaffold1328 GLEAN mRNA 90672 92405 0.976468 + . ID=CGI_10012986; scaffold1328 WUBlastX LINE_RTE-BovB 100029 100142 77 + . . scaffold1328 WUBlastX LINE_RTE-BovB 100144 100293 60 + . . scaffold1328 WUBlastX LINE_CR1 101600 101764 54 - . . scaffold1328 WUBlastX LINE_Penelope 102653 103096 139 - . . scaffold1328 WUBlastX LINE_Penelope 102875 103156 47 - . . scaffold1328 GLEAN mRNA 107115 120166 0.999949 - . ID=CGI_10012987; scaffold1328 TRF Tandem_Repeat 107324 107413 76 + . . scaffold1328 TRF Tandem_Repeat 107959 108878 1210 + . . scaffold1328 GLEAN promoter 120167 121166 0.999949 - . ID=CGI_10012987; scaffold1328 TRF Tandem_Repeat 145095 146813 2695 + . . scaffold1328 TRF Tandem_Repeat 145095 146813 2670 + . . scaffold1328 TRF Tandem_Repeat 148142 149000 1170 + . . scaffold1328 TRF Tandem_Repeat 167225 167278 99 + . . scaffold1328 WUBlastX LTR_Ngaro 169392 169466 47 - . . scaffold1328 TRF Tandem_Repeat 169593 169634 59 + . . scaffold1328 WUBlastX LTR_Ngaro 172155 172577 203 - . . scaffold1328 WUBlastX LTR_Ngaro 172615 172794 38 - . . scaffold1328 TRF Tandem_Repeat 180169 180193 50 + . . scaffold1328 GLEAN mRNA 189773 194666 0.999675 - . ID=CGI_10012988; scaffold1328 GLEAN promoter 194667 195666 0.999675 - . ID=CGI_10012988; scaffold1328 GLEAN mRNA 194809 210321 0.999376 - . ID=CGI_10012989; scaffold1328 GLEAN promoter 210322 211321 0.999376 - . ID=CGI_10012989; scaffold1328 WUBlastX LTR_DIRS 212490 212564 39 + . . scaffold1328 WUBlastX LTR_DIRS 212743 212853 57 + . . scaffold1328 WUBlastX LTR_DIRS 212859 213029 41 + . . scaffold1328 WUBlastX LTR_DIRS 212922 213050 26 + . . scaffold1328 WUBlastX LTR_Ngaro 214089 214148 29 - . . scaffold1328 WUBlastX LTR_Ngaro 214148 214237 44 - . . scaffold1328 WUBlastX LTR_Ngaro 214304 214456 39 - . . scaffold1328 WUBlastX LTR_Ngaro 214501 214557 36 - . . scaffold1328 WUBlastX LTR_Ngaro 214530 214775 37 - . . scaffold1328 TRF Tandem_Repeat 216602 216649 60 + . . scaffold1328 TRF Tandem_Repeat 216605 216649 81 + . . scaffold1328 WUBlastX LTR_Ngaro 218094 218285 67 - . . scaffold1328 TRF Tandem_Repeat 224626 224678 106 + . . scaffold1328 WUBlastX LINE_RTE-X 226757 226972 46 - . . scaffold1328 GLEAN mRNA 227617 243814 0.999186 - . ID=CGI_10012991; scaffold1328 TRF Tandem_Repeat 229896 230015 150 + . . scaffold1328 TRF Tandem_Repeat 240967 241012 92 + . . scaffold1328 TRF Tandem_Repeat 241759 241811 106 + . . scaffold1328 GLEAN promoter 243815 244814 0.999186 - . ID=CGI_10012991; scaffold1328 WUBlastX LTR_DIRS 249974 250159 36 + . . scaffold1328 WUBlastX LTR_DIRS 250944 251501 42 + . . scaffold1328 WUBlastX LTR_DIRS 251172 251504 56 + . . scaffold1328 WUBlastX LTR_DIRS 251829 251903 22 + . . scaffold1328 GLEAN mRNA 256742 258503 1 - . ID=CGI_10012992; scaffold1328 GLEAN promoter 258504 259503 1 - . ID=CGI_10012992; scaffold1328 TRF Tandem_Repeat 260476 260515 62 + . . scaffold1328 TRF Tandem_Repeat 260640 261315 820 + . . scaffold1328 TRF Tandem_Repeat 262995 263426 598 + . . scaffold1328 TRF Tandem_Repeat 266975 267118 218 + . . scaffold1328 TRF Tandem_Repeat 286119 286647 869 + . . scaffold1328 TRF Tandem_Repeat 286940 287444 367 + . . scaffold1328 TRF Tandem_Repeat 286990 287441 418 + . . scaffold1328 TRF Tandem_Repeat 287828 288253 485 + . . scaffold1328 TRF Tandem_Repeat 302394 302436 86 + . . scaffold1328 GLEAN mRNA 310802 321439 0.78586 - . ID=CGI_10012993; scaffold1328 WUBlastX LTR_Pao 311668 316782 3981 - . . scaffold1328 TRF Tandem_Repeat 316799 317185 258 + . . scaffold1328 TRF Tandem_Repeat 316802 317129 333 + . . scaffold1328 WUBlastX LTR_Pao 317257 317523 58 - . . scaffold1328 GLEAN promoter 321440 322439 0.78586 - . ID=CGI_10012993; scaffold1328 TRF Tandem_Repeat 322454 323177 914 + . . scaffold1328 GLEAN promoter 322676 323675 0.776727 + . ID=CGI_10012994; scaffold1328 GLEAN promoter 323419 324418 0.99929 + . ID=CGI_10012995; scaffold1328 GLEAN mRNA 323676 324083 0.776727 + . ID=CGI_10012994; scaffold1328 GLEAN mRNA 324419 326509 0.99929 + . ID=CGI_10012995; scaffold1328 TRF Tandem_Repeat 340333 340392 102 + . . scaffold1328 TRF Tandem_Repeat 342804 343037 252 + . . scaffold1328 TRF Tandem_Repeat 342804 343037 225 + . . scaffold1328 TRF Tandem_Repeat 342828 343037 249 + . . scaffold1328 TRF Tandem_Repeat 343238 343304 89 + . . scaffold1328 TRF Tandem_Repeat 343238 343304 98 + . . scaffold1329 TRF Tandem_Repeat 8665 8779 221 + . . scaffold1329 WUBlastX LINE_L1-Tx1 12907 14220 505 - . . scaffold1329 WUBlastX LINE_L1-Tx1 14217 15434 437 - . . scaffold1329 WUBlastX LINE_L1-Tx1 15368 15562 74 - . . scaffold1329 WUBlastX LINE_L1-Tx1 15428 15619 71 - . . scaffold1329 WUBlastX LINE_L1-Tx1 15669 16556 269 - . . scaffold1329 WUBlastX LINE_L1-Tx1 15972 16556 314 - . . scaffold1329 GLEAN promoter 19559 20558 0.995804 + . ID=CGI_10015779; scaffold1329 GLEAN mRNA 20559 21032 0.995804 + . ID=CGI_10015779; scaffold1329 GLEAN promoter 28026 29025 0.998814 + . ID=CGI_10015780; scaffold1329 GLEAN mRNA 29026 29625 0.998814 + . ID=CGI_10015780; scaffold1329 WUBlastX LINE_CR1 33863 33916 27 - . . scaffold1329 WUBlastX LINE_L2 34187 34525 21 - . . scaffold1329 WUBlastX LINE_RTE-X 34247 34537 68 - . . scaffold1329 WUBlastX LINE_RTE-X 34560 35111 114 - . . scaffold1329 WUBlastX LINE_I-Nimb 35050 35274 47 - . . scaffold1329 WUBlastX LINE_RTE-X 35059 35313 46 - . . scaffold1329 WUBlastX LINE_Jockey 35300 35356 31 - . . scaffold1329 WUBlastX LINE_L1 35300 35410 23 - . . scaffold1329 WUBlastX LINE_L2 35300 35380 31 - . . scaffold1329 WUBlastX LINE_RTE-X 43328 43465 32 - . . scaffold1329 WUBlastX LINE_RTE-X 43355 43474 33 - . . scaffold1329 TRF Tandem_Repeat 44091 44119 51 + . . scaffold1329 WUBlastX LINE_RTE-X 46843 47358 65 + . . scaffold1329 WUBlastX LINE_RTE-X 46945 47331 72 + . . scaffold1329 WUBlastX LINE_RTE-X 46978 47304 75 + . . scaffold1329 TRF Tandem_Repeat 58664 59572 1224 + . . scaffold1329 GLEAN promoter 61472 62471 0.809896 + . ID=CGI_10015781; scaffold1329 GLEAN mRNA 62472 64752 0.809896 + . ID=CGI_10015781; scaffold1329 TRF Tandem_Repeat 65272 65359 117 + . . scaffold1329 TRF Tandem_Repeat 76499 76539 82 + . . scaffold1329 GLEAN mRNA 77218 94406 0.816606 - . ID=CGI_10015782; scaffold1329 TRF Tandem_Repeat 81916 81953 58 + . . scaffold1329 WUBlastX DNA_TcMar-m44 87479 87778 140 + . . scaffold1329 WUBlastX DNA_hAT-Tag1 91822 92319 29 - . . scaffold1329 WUBlastX DNA_hAT-Ac 91897 92229 59 - . . scaffold1329 WUBlastX DNA_hAT-Ac 91963 92553 202 - . . scaffold1329 WUBlastX DNA_hAT-Ac 92576 93394 423 - . . scaffold1329 WUBlastX DNA_hAT-Ac 92624 93541 188 - . . scaffold1329 WUBlastX DNA_hAT 93862 94035 28 - . . scaffold1329 WUBlastX DNA_hAT-Ac 93895 94041 52 - . . scaffold1329 WUBlastX DNA_hAT-Ac 93898 94077 36 - . . scaffold1329 GLEAN promoter 94407 95406 0.816606 - . ID=CGI_10015782; scaffold1329 GLEAN mRNA 94432 94722 0.733047 - . ID=CGI_10015783; scaffold1329 GLEAN promoter 94723 95722 0.733047 - . ID=CGI_10015783; scaffold1329 WUBlastX LTR_Gypsy 94847 94966 40 - . . scaffold1329 WUBlastX LTR_Gypsy-Cigr 94911 96068 753 - . . scaffold1329 WUBlastX LTR_Gypsy 96049 97509 781 - . . scaffold1329 WUBlastX LTR_Gypsy-Cigr 96172 97410 1158 - . . scaffold1329 WUBlastX LTR_Gypsy 97377 98321 183 - . . scaffold1329 WUBlastX LTR_Gypsy 98007 98432 80 - . . scaffold1329 WUBlastX LTR_Gypsy 98426 99055 71 - . . scaffold1329 WUBlastX LTR_Gypsy-Cigr 98516 99025 118 - . . scaffold1329 WUBlastX LTR_Gypsy 99033 99203 26 - . . scaffold1329 WUBlastX LTR_Gypsy-Cigr 99036 99173 43 - . . scaffold1329 TRF Tandem_Repeat 100302 100412 134 + . . scaffold1329 TRF Tandem_Repeat 100489 100580 103 + . . scaffold1329 WUBlastX LINE_CR1-L2 103489 104100 100 - . . scaffold1329 WUBlastX LINE_L2 104100 104249 36 - . . scaffold1329 WUBlastX LINE_CR1-L2 104103 104204 46 - . . scaffold1329 WUBlastX LINE_L2 104180 104284 30 - . . scaffold1329 TRF Tandem_Repeat 106286 106317 64 + . . scaffold1329 WUBlastX LINE_CR1-L2 111262 111642 53 - . . scaffold1329 WUBlastX LINE_CR1-L2 111533 112063 110 - . . scaffold1329 WUBlastX LINE_L2 111620 112078 173 - . . scaffold1329 WUBlastX LINE_L1 114121 114381 20 + . . scaffold1329 WUBlastX LINE_L2 114321 114623 89 + . . scaffold1329 WUBlastX LINE_L1 114423 114683 131 + . . scaffold1329 WUBlastX LINE_L1-Tx1 114447 114764 63 + . . scaffold1329 WUBlastX LINE_CR1 114783 115163 90 + . . scaffold1329 WUBlastX LINE_RTE-X 115165 115314 56 + . . scaffold1329 WUBlastX LINE_RTE-X 115268 115516 99 + . . scaffold1329 WUBlastX LINE_RTE-X 115286 115474 103 + . . scaffold1329 WUBlastX LINE_RTE-X 115543 115992 152 + . . scaffold1329 WUBlastX LINE_RTE-X 115770 116231 138 + . . scaffold1329 TRF Tandem_Repeat 116722 116751 60 + . . scaffold1329 WUBlastX LINE_RTE-X 116824 116973 28 + . . scaffold1329 WUBlastX LINE_RTE-X 116848 116925 42 + . . scaffold1329 WUBlastX LINE_RTE-X 116921 117208 69 + . . scaffold1329 WUBlastX LINE_RTE-X 116969 117202 112 + . . scaffold1329 GLEAN mRNA 123466 129610 0.554979 - . ID=CGI_10015784; scaffold1329 GLEAN promoter 129611 130610 0.554979 - . ID=CGI_10015784; scaffold1329 GLEAN mRNA 142370 180575 0.999351 - . ID=CGI_10015785; scaffold1329 GLEAN promoter 180576 181575 0.999351 - . ID=CGI_10015785; scaffold1329 TRF Tandem_Repeat 191268 191384 84 + . . scaffold1329 TRF Tandem_Repeat 191280 191448 80 + . . scaffold1329 TRF Tandem_Repeat 191300 191481 181 + . . scaffold1329 TRF Tandem_Repeat 191326 191480 61 + . . scaffold1329 TRF Tandem_Repeat 195157 195259 70 + . . scaffold1329 TRF Tandem_Repeat 195157 195344 211 + . . scaffold1329 TRF Tandem_Repeat 195189 195375 191 + . . scaffold1329 WUBlastX LINE_L2 197232 197432 51 - . . scaffold1329 WUBlastX LINE_L2 197295 197492 59 - . . scaffold1329 WUBlastX LINE_L2 197295 197444 76 - . . scaffold1329 WUBlastX LINE_L2 197427 197789 54 - . . scaffold1329 WUBlastX LINE_L2 197512 197904 23 - . . scaffold1329 WUBlastX LINE_L2 197909 198064 36 - . . scaffold1329 TRF Tandem_Repeat 206180 206210 53 + . . scaffold1329 WUBlastX DNA_Kolobok 207496 207774 53 + . . scaffold1329 WUBlastX DNA_Kolobok 207496 207828 37 + . . scaffold1329 WUBlastX DNA_Kolobok 208428 208634 58 - . . scaffold1329 WUBlastX DNA_Kolobok 208539 208676 23 - . . scaffold1329 WUBlastX DNA_Kolobok 209165 209329 49 - . . scaffold1329 TRF Tandem_Repeat 214965 216056 1032 + . . scaffold1329 TRF Tandem_Repeat 218826 218859 50 + . . scaffold1329 TRF Tandem_Repeat 218837 218871 54 + . . scaffold1329 TRF Tandem_Repeat 227060 227098 78 + . . scaffold1329 TRF Tandem_Repeat 227097 227142 92 + . . scaffold1329 GLEAN promoter 232559 233558 0.980296 + . ID=CGI_10015786; scaffold1329 GLEAN mRNA 233559 242569 0.980296 + . ID=CGI_10015786; scaffold1329 TRF Tandem_Repeat 235349 235466 69 + . . scaffold1329 TRF Tandem_Repeat 236518 236559 84 + . . scaffold1329 GLEAN mRNA 247391 250699 0.78831 - . ID=CGI_10015787; scaffold1329 TRF Tandem_Repeat 248372 248506 137 + . . scaffold1329 GLEAN promoter 250700 251699 0.78831 - . ID=CGI_10015787; scaffold1329 TRF Tandem_Repeat 252155 252189 56 + . . scaffold1329 GLEAN mRNA 253426 254911 1 - . ID=CGI_10015788; scaffold1329 GLEAN promoter 254912 255911 1 - . ID=CGI_10015788; scaffold1329 WUBlastX LINE_RTE-X 258846 259031 42 - . . scaffold1329 WUBlastX LINE_RTE-X 258924 259031 48 - . . scaffold1329 WUBlastX LINE_RTE-X 260783 261052 22 - . . scaffold1329 WUBlastX LINE_RTE-X 260864 261073 45 - . . scaffold1329 TRF Tandem_Repeat 261093 261130 69 + . . scaffold1329 WUBlastX LINE_L2 261649 261825 41 - . . scaffold1329 WUBlastX LINE_RTE-X 261776 262084 49 - . . scaffold1329 WUBlastX LINE_RTE-X 261833 262174 67 - . . scaffold1329 WUBlastX LINE_RTE-X 261833 262102 84 - . . scaffold1329 WUBlastX LINE_L2 262025 262207 33 - . . scaffold1329 WUBlastX LINE_RTE-X 262658 262759 34 - . . scaffold1329 WUBlastX LINE_RTE-X 262691 262759 38 - . . scaffold1329 WUBlastX LINE_RTE-X 262749 262994 46 - . . scaffold1329 WUBlastX LTR_DIRS 263063 263335 68 + . . scaffold1329 WUBlastX LTR_DIRS 263308 263628 55 + . . scaffold1329 WUBlastX LTR_DIRS 263846 264100 127 + . . scaffold1329 WUBlastX LTR_DIRS 264088 264399 163 + . . scaffold1329 WUBlastX LTR_DIRS 264401 264598 86 + . . scaffold1329 WUBlastX LTR_DIRS 264750 265586 411 + . . scaffold1329 WUBlastX LINE_RTE-X 265759 265983 46 - . . scaffold1329 WUBlastX LINE_RTE-X 265792 265980 75 - . . scaffold1329 WUBlastX LINE_Jockey 265813 266103 43 - . . scaffold1329 WUBlastX LINE_RTE-X 266769 267044 29 - . . scaffold1329 GLEAN mRNA 267398 267913 0.649524 - . ID=CGI_10015789; scaffold1329 GLEAN promoter 267914 268913 0.649524 - . ID=CGI_10015789; scaffold1329 GLEAN promoter 271455 272454 1 + . ID=CGI_10015790; scaffold1329 TRF Tandem_Repeat 271806 271858 106 + . . scaffold1329 GLEAN mRNA 272455 274691 1 + . ID=CGI_10015790; scaffold1329 GLEAN promoter 277337 278336 1 + . ID=CGI_10015791; scaffold1329 GLEAN mRNA 278337 285594 1 + . ID=CGI_10015791; scaffold1329 TRF Tandem_Repeat 287141 287251 141 + . . scaffold1329 GLEAN mRNA 290971 296481 1 - . ID=CGI_10015792; scaffold1329 TRF Tandem_Repeat 292741 292797 114 + . . scaffold1329 TRF Tandem_Repeat 295004 295059 112 + . . scaffold1329 TRF Tandem_Repeat 296254 296311 116 + . . scaffold1329 GLEAN promoter 296482 297481 1 - . ID=CGI_10015792; scaffold1329 GLEAN mRNA 313976 322117 0.836238 - . ID=CGI_10015793; scaffold1329 TRF Tandem_Repeat 316166 316220 101 + . . scaffold1329 GLEAN promoter 322118 323117 0.836238 - . ID=CGI_10015793; scaffold1329 GLEAN promoter 325995 326994 1 + . ID=CGI_10015794; scaffold1329 GLEAN mRNA 326995 335234 1 + . ID=CGI_10015794; scaffold1329 GLEAN promoter 337528 338527 1 + . ID=CGI_10015795; scaffold1329 GLEAN mRNA 338528 340814 1 + . ID=CGI_10015795; scaffold1329 GLEAN mRNA 343359 349478 1 - . ID=CGI_10015796; scaffold1329 TRF Tandem_Repeat 347035 347061 54 + . . scaffold1329 GLEAN promoter 349479 350478 1 - . ID=CGI_10015796; scaffold1329 GLEAN mRNA 354111 367179 1 - . ID=CGI_10015797; scaffold1329 TRF Tandem_Repeat 354177 354231 110 + . . scaffold1329 TRF Tandem_Repeat 356220 356277 116 + . . scaffold1329 GLEAN promoter 367180 368179 1 - . ID=CGI_10015797; scaffold1329 WUBlastX DNA_Crypton 367451 367771 57 - . . scaffold1329 TRF Tandem_Repeat 368339 368374 72 + . . scaffold1329 GLEAN promoter 373236 374235 0.999633 + . ID=CGI_10015798; scaffold1329 GLEAN mRNA 374236 377724 0.999633 + . ID=CGI_10015798; scaffold1329 TRF Tandem_Repeat 376025 376052 56 + . . scaffold1329 WUBlastX LTR_Gypsy 377065 377355 36 + . . scaffold1329 TRF Tandem_Repeat 377380 377428 80 + . . scaffold1329 TRF Tandem_Repeat 382700 382751 86 + . . scaffold1329 TRF Tandem_Repeat 385523 385743 237 + . . scaffold1329 TRF Tandem_Repeat 386376 386596 237 + . . scaffold1329 TRF Tandem_Repeat 394326 394389 128 + . . scaffold1329 GLEAN mRNA 406311 427871 0.544483 - . ID=CGI_10015799; scaffold1329 TRF Tandem_Repeat 422361 424019 2040 + . . scaffold1329 TRF Tandem_Repeat 422361 424019 2013 + . . scaffold1329 GLEAN promoter 427550 428549 0.999981 + . ID=CGI_10015800; scaffold1329 GLEAN promoter 427872 428871 0.544483 - . ID=CGI_10015799; scaffold1329 GLEAN mRNA 428550 442753 0.999981 + . ID=CGI_10015800; scaffold133 TRF Tandem_Repeat 962 1087 76 + . . scaffold133 TRF Tandem_Repeat 1015 1087 60 + . . scaffold133 TRF Tandem_Repeat 1261 1353 186 + . . scaffold133 WUBlastX DNA_TcMar-Tc1 8740 9357 131 + . . scaffold133 WUBlastX DNA_TcMar-Tc1 9018 9755 161 + . . scaffold133 WUBlastX DNA_TcMar-Tc1 9276 9755 267 + . . scaffold133 TRF Tandem_Repeat 10735 10926 168 + . . scaffold133 TRF Tandem_Repeat 18663 19313 691 + . . scaffold133 TRF Tandem_Repeat 20094 20593 569 + . . scaffold133 TRF Tandem_Repeat 22623 22660 76 + . . scaffold133 TRF Tandem_Repeat 22899 23038 185 + . . scaffold133 TRF Tandem_Repeat 22900 23038 151 + . . scaffold133 GLEAN mRNA 23626 24624 0.998816 - . ID=CGI_10007524; scaffold133 GLEAN promoter 24625 25624 0.998816 - . ID=CGI_10007524; scaffold133 TRF Tandem_Repeat 32961 33052 141 + . . scaffold133 TRF Tandem_Repeat 37131 37182 104 + . . scaffold133 WUBlastX LINE_L1 44513 44623 43 - . . scaffold133 WUBlastX LINE_L1-Tx1 45234 45386 33 - . . scaffold133 WUBlastX LINE_L1-Tx1 45270 45395 54 - . . scaffold133 WUBlastX LINE_L1-Tx1 45523 45705 21 - . . scaffold133 WUBlastX LINE_L1 45854 46111 56 - . . scaffold133 WUBlastX LINE_L1-Tx1 45953 46114 83 - . . scaffold133 WUBlastX LINE_L1-Tx1 46114 46485 143 - . . scaffold133 WUBlastX LINE_L1 47031 47108 22 - . . scaffold133 TRF Tandem_Repeat 56735 56805 115 + . . scaffold133 TRF Tandem_Repeat 69888 69933 92 + . . scaffold133 TRF Tandem_Repeat 84220 84259 53 + . . scaffold133 TRF Tandem_Repeat 88851 88892 57 + . . scaffold133 TRF Tandem_Repeat 92155 92203 82 + . . scaffold133 WUBlastX DNA_Harbinger 98564 98863 47 + . . scaffold133 TRF Tandem_Repeat 104077 104125 98 + . . scaffold133 TRF Tandem_Repeat 115671 116669 1196 + . . scaffold133 TRF Tandem_Repeat 117565 117693 100 + . . scaffold133 TRF Tandem_Repeat 117580 117698 112 + . . scaffold133 TRF Tandem_Repeat 117580 117697 96 + . . scaffold133 TRF Tandem_Repeat 122858 122968 150 + . . scaffold133 WUBlastX LTR_Gypsy 131993 132730 247 - . . scaffold133 WUBlastX LTR_Gypsy 132104 132736 496 - . . scaffold133 WUBlastX LINE_L1-Tx1 137003 138400 346 - . . scaffold133 WUBlastX LINE_L1-Tx1 139465 139953 41 - . . scaffold133 WUBlastX LINE_L1-Tx1 139681 139953 107 - . . scaffold133 WUBlastX LINE_L1-Tx1 139693 140001 81 - . . scaffold133 WUBlastX LINE_L1 139702 139869 113 - . . scaffold133 WUBlastX LINE_L1 139708 140094 49 - . . scaffold133 TRF Tandem_Repeat 141435 141472 67 + . . scaffold133 GLEAN mRNA 181178 182775 0.999999 - . ID=CGI_10007525; scaffold133 GLEAN promoter 182776 183668 0.999999 - . ID=CGI_10007525; scaffold1330 GLEAN promoter 17273 18272 1 + . ID=CGI_10009450; scaffold1330 GLEAN mRNA 18273 26218 1 + . ID=CGI_10009450; scaffold1330 TRF Tandem_Repeat 22747 23309 411 + . . scaffold1330 TRF Tandem_Repeat 22765 23309 618 + . . scaffold1330 TRF Tandem_Repeat 23399 23569 189 + . . scaffold1330 TRF Tandem_Repeat 23407 23586 180 + . . scaffold1330 TRF Tandem_Repeat 23407 23569 152 + . . scaffold1330 GLEAN mRNA 29770 34950 1 - . ID=CGI_10009451; scaffold1330 GLEAN promoter 34951 35950 1 - . ID=CGI_10009451; scaffold1330 TRF Tandem_Repeat 34958 35090 68 + . . scaffold1330 TRF Tandem_Repeat 36792 37181 577 + . . scaffold1330 GLEAN mRNA 38642 40984 0.992003 - . ID=CGI_10009452; scaffold1330 GLEAN promoter 40985 41984 0.992003 - . ID=CGI_10009452; scaffold1330 GLEAN promoter 46017 47016 0.999661 + . ID=CGI_10009453; scaffold1330 GLEAN mRNA 47017 48816 0.999661 + . ID=CGI_10009453; scaffold1330 TRF Tandem_Repeat 48929 48960 64 + . . scaffold1330 GLEAN mRNA 52782 57206 1 - . ID=CGI_10009454; scaffold1330 TRF Tandem_Repeat 54035 54318 336 + . . scaffold1330 GLEAN promoter 57207 58206 1 - . ID=CGI_10009454; scaffold1330 TRF Tandem_Repeat 58878 58919 57 + . . scaffold1330 TRF Tandem_Repeat 59276 59716 741 + . . scaffold1330 GLEAN mRNA 61571 70286 0.544237 - . ID=CGI_10009455; scaffold1330 TRF Tandem_Repeat 65331 65369 71 + . . scaffold1330 GLEAN promoter 70287 71286 0.544237 - . ID=CGI_10009455; scaffold1330 TRF Tandem_Repeat 103879 104624 1142 + . . scaffold1330 GLEAN promoter 113532 114531 0.999949 + . ID=CGI_10009456; scaffold1330 GLEAN mRNA 114532 120096 0.999949 + . ID=CGI_10009456; scaffold1330 TRF Tandem_Repeat 123838 124050 327 + . . scaffold1330 TRF Tandem_Repeat 123879 124026 77 + . . scaffold1330 GLEAN mRNA 124519 125538 0.66458 - . ID=CGI_10009457; scaffold1330 GLEAN promoter 125539 126538 0.66458 - . ID=CGI_10009457; scaffold1330 TRF Tandem_Repeat 128734 129917 1354 + . . scaffold1330 TRF Tandem_Repeat 132452 132678 274 + . . scaffold1330 TRF Tandem_Repeat 136106 136147 50 + . . scaffold1330 WUBlastX LTR_Gypsy 137607 139286 632 - . . scaffold1330 WUBlastX LTR_Gypsy 139049 140194 345 - . . scaffold1330 WUBlastX LTR_Gypsy 139499 140194 540 - . . scaffold1330 WUBlastX LTR_Gypsy 140145 140939 487 - . . scaffold1330 WUBlastX LTR_Gypsy 140148 140819 500 - . . scaffold1330 TRF Tandem_Repeat 143191 143244 108 + . . scaffold1330 WUBlastX LINE_L1-Tx1 143431 143964 74 - . . scaffold1330 WUBlastX LINE_L1-Tx1 143455 143865 116 - . . scaffold1330 WUBlastX LINE_L1-Tx1 143928 144827 129 - . . scaffold1330 TRF Tandem_Repeat 156150 156823 1314 + . . scaffold1330 TRF Tandem_Repeat 171110 171161 104 + . . scaffold1330 TRF Tandem_Repeat 180344 180379 65 + . . scaffold1330 GLEAN mRNA 186442 194358 0.999 - . ID=CGI_10009458; scaffold1330 TRF Tandem_Repeat 187903 187947 72 + . . scaffold1330 TRF Tandem_Repeat 189912 189951 80 + . . scaffold1330 TRF Tandem_Repeat 190756 190796 82 + . . scaffold1330 TRF Tandem_Repeat 191417 191472 60 + . . scaffold1330 GLEAN promoter 194359 195358 0.999 - . ID=CGI_10009458; scaffold1330 TRF Tandem_Repeat 195651 195689 64 + . . scaffold1330 TRF Tandem_Repeat 210462 210506 90 + . . scaffold1330 TRF Tandem_Repeat 211661 211719 118 + . . scaffold1330 TRF Tandem_Repeat 218848 218895 51 + . . scaffold1330 WUBlastX LTR_Ngaro 227704 227784 23 + . . scaffold1330 WUBlastX LTR_Ngaro 227796 228416 70 + . . scaffold1330 WUBlastX LTR_Ngaro 228312 228788 106 + . . scaffold1330 WUBlastX LTR_Ngaro 228820 228981 75 + . . scaffold1330 WUBlastX LTR_Ngaro 228980 229057 25 + . . scaffold1330 WUBlastX LTR_Ngaro 229853 229924 37 + . . scaffold1331 GLEAN mRNA 1637 3196 0.999996 - . ID=CGI_10000237; scaffold1331 GLEAN promoter 3197 3212 0.999996 - . ID=CGI_10000237; scaffold1333 GLEAN mRNA 338 23548 0.590765 - . ID=CGI_10009672; scaffold1333 TRF Tandem_Repeat 7277 7319 54 + . . scaffold1333 TRF Tandem_Repeat 8986 9381 458 + . . scaffold1333 WUBlastX LTR_Copia 11361 11759 38 - . . scaffold1333 GLEAN promoter 23549 24548 0.590765 - . ID=CGI_10009672; scaffold1333 GLEAN mRNA 27477 27887 1 - . ID=CGI_10009673; scaffold1333 GLEAN promoter 27888 28887 1 - . ID=CGI_10009673; scaffold1333 TRF Tandem_Repeat 31011 31050 80 + . . scaffold1333 WUBlastX DNA_IS4EU 40740 40910 23 - . . scaffold1333 WUBlastX LINE_CR1 40767 40895 35 - . . scaffold1333 TRF Tandem_Repeat 42078 42127 91 + . . scaffold1333 TRF Tandem_Repeat 48110 48864 939 + . . scaffold1333 GLEAN mRNA 51293 57849 0.723221 - . ID=CGI_10009674; scaffold1333 WUBlastX DNA?_Crypton? 54157 54510 28 - . . scaffold1333 WUBlastX LTR_DIRS 54214 54450 56 - . . scaffold1333 WUBlastX LTR_Ngaro 54289 55152 333 - . . scaffold1333 WUBlastX LTR_Ngaro 55235 56761 551 - . . scaffold1333 WUBlastX LTR_Ngaro 55292 56503 807 - . . scaffold1333 WUBlastX LTR_ERV1 56872 56934 23 - . . scaffold1333 GLEAN promoter 57850 58849 0.723221 - . ID=CGI_10009674; scaffold1333 GLEAN mRNA 57908 58144 0.999372 - . ID=CGI_10009675; scaffold1333 GLEAN promoter 58145 59144 0.999372 - . ID=CGI_10009675; scaffold1333 GLEAN mRNA 58541 64481 1 - . ID=CGI_10009676; scaffold1333 TRF Tandem_Repeat 59309 60271 1229 + . . scaffold1333 GLEAN promoter 63867 64866 1 + . ID=CGI_10009677; scaffold1333 GLEAN promoter 64482 65481 1 - . ID=CGI_10009676; scaffold1333 GLEAN mRNA 64867 67834 1 + . ID=CGI_10009677; scaffold1333 GLEAN mRNA 68207 75961 0.985265 - . ID=CGI_10009678; scaffold1333 GLEAN promoter 75962 76961 0.985265 - . ID=CGI_10009678; scaffold1333 GLEAN mRNA 79859 81319 1 - . ID=CGI_10009679; scaffold1333 GLEAN promoter 81320 82319 1 - . ID=CGI_10009679; scaffold1333 GLEAN mRNA 86802 98515 1 - . ID=CGI_10009680; scaffold1333 TRF Tandem_Repeat 91364 91401 58 + . . scaffold1333 GLEAN promoter 98516 99515 1 - . ID=CGI_10009680; scaffold1333 TRF Tandem_Repeat 100769 100842 148 + . . scaffold1333 TRF Tandem_Repeat 101075 101114 80 + . . scaffold1333 GLEAN promoter 101196 102195 1 + . ID=CGI_10009681; scaffold1333 GLEAN mRNA 102196 105130 1 + . ID=CGI_10009681; scaffold1333 GLEAN mRNA 112796 135997 0.999051 - . ID=CGI_10009682; scaffold1333 TRF Tandem_Repeat 115569 116760 1500 + . . scaffold1333 GLEAN promoter 135998 136997 0.999051 - . ID=CGI_10009682; scaffold1333 GLEAN promoter 136593 137592 1 + . ID=CGI_10009683; scaffold1333 TRF Tandem_Repeat 137005 137047 86 + . . scaffold1333 GLEAN mRNA 137593 141339 1 + . ID=CGI_10009683; scaffold1333 TRF Tandem_Repeat 139023 139080 116 + . . scaffold1333 TRF Tandem_Repeat 139125 139172 96 + . . scaffold1333 GLEAN mRNA 139301 146614 0.75449 - . ID=CGI_10009684; scaffold1333 GLEAN promoter 146005 147004 1 + . ID=CGI_10009685; scaffold1333 GLEAN promoter 146615 147614 0.75449 - . ID=CGI_10009684; scaffold1333 GLEAN mRNA 147005 158062 1 + . ID=CGI_10009685; scaffold1333 TRF Tandem_Repeat 154235 154272 60 + . . scaffold1333 TRF Tandem_Repeat 156409 156479 90 + . . scaffold1333 WUBlastX LINE_L1-Tx1 158582 159139 58 - . . scaffold1333 WUBlastX LINE_L1-Tx1 158696 159139 191 - . . scaffold1333 WUBlastX LINE_L1-Tx1 169274 170455 817 - . . scaffold1333 WUBlastX LINE_L1-Tx1 170479 171237 535 - . . scaffold1333 WUBlastX LINE_L2 171615 172109 132 - . . scaffold1333 WUBlastX LINE_L1-Tx1 171789 172202 65 - . . scaffold1333 GLEAN promoter 177551 178550 0.511082 + . ID=CGI_10009686; scaffold1333 GLEAN mRNA 178551 188188 0.511082 + . ID=CGI_10009686; scaffold1333 GLEAN promoter 187643 188642 0.999675 + . ID=CGI_10009687; scaffold1333 TRF Tandem_Repeat 187689 187802 185 + . . scaffold1333 TRF Tandem_Repeat 188496 188548 106 + . . scaffold1333 GLEAN mRNA 188643 191301 0.999675 + . ID=CGI_10009687; scaffold1333 TRF Tandem_Repeat 192361 192412 104 + . . scaffold1333 GLEAN mRNA 196945 205528 0.99265 - . ID=CGI_10009688; scaffold1333 TRF Tandem_Repeat 204774 204829 85 + . . scaffold1333 GLEAN promoter 205529 206528 0.99265 - . ID=CGI_10009688; scaffold1333 GLEAN mRNA 207334 238318 0.812187 - . ID=CGI_10009689; scaffold1333 TRF Tandem_Repeat 211581 211629 50 + . . scaffold1333 TRF Tandem_Repeat 230737 230775 78 + . . scaffold1333 TRF Tandem_Repeat 237120 237202 157 + . . scaffold1333 GLEAN promoter 238319 239318 0.812187 - . ID=CGI_10009689; scaffold1334 GLEAN mRNA 1383 27081 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 1784 1825 50 + . . scaffold1334 TRF Tandem_Repeat 5120 5173 108 + . . scaffold1334 WUBlastX LINE_Penelope 7590 8843 437 + . . scaffold1334 WUBlastX LINE_Penelope 7620 9077 231 + . . scaffold1334 WUBlastX LINE_Penelope 8337 9488 87 + . . scaffold1334 WUBlastX LINE_Penelope 9121 9687 58 + . . scaffold1334 WUBlastX LINE_Penelope 9544 9726 44 + . . scaffold1334 WUBlastX LINE_RTE-X 12515 12649 50 + . . scaffold1334 WUBlastX LINE_RTE-X 12703 12798 32 + . . scaffold1334 TRF Tandem_Repeat 19088 19119 55 + . . scaffold1334 TRF Tandem_Repeat 20423 20760 292 + . . scaffold1334 TRF Tandem_Repeat 20423 20785 336 + . . scaffold1334 TRF Tandem_Repeat 20425 20783 361 + . . scaffold1334 TRF Tandem_Repeat 23176 23612 322 + . . scaffold1334 TRF Tandem_Repeat 23220 23402 161 + . . scaffold1334 TRF Tandem_Repeat 23406 23613 222 + . . scaffold1334 GLEAN promoter 27082 28081 0.666269 - . ID=CGI_10003403; scaffold1334 TRF Tandem_Repeat 48763 48819 114 + . . scaffold1334 TRF Tandem_Repeat 50551 50582 55 + . . scaffold1334 GLEAN promoter 58811 59810 1 + . ID=CGI_10003404; scaffold1334 GLEAN mRNA 59811 60300 1 + . ID=CGI_10003404; scaffold1334 TRF Tandem_Repeat 64688 64723 72 + . . scaffold1334 TRF Tandem_Repeat 70392 70447 112 + . . scaffold1335 GLEAN promoter 1 496 0.65089 + . ID=CGI_10001395; scaffold1335 GLEAN mRNA 497 21134 0.65089 + . ID=CGI_10001395; scaffold1335 TRF Tandem_Repeat 2406 2678 261 + . . scaffold1335 TRF Tandem_Repeat 2406 2678 262 + . . scaffold1335 TRF Tandem_Repeat 2406 2678 280 + . . scaffold1335 TRF Tandem_Repeat 10255 10379 196 + . . scaffold1335 WUBlastX LINE_Penelope 12438 12554 32 - . . scaffold1335 WUBlastX LINE_Penelope 12557 13180 96 - . . scaffold1335 WUBlastX LINE_Penelope 12674 13180 121 - . . scaffold1335 WUBlastX LINE_Penelope 12758 13204 141 - . . scaffold1335 WUBlastX LINE_Penelope 13183 13659 202 - . . scaffold1335 WUBlastX LINE_Penelope 14866 15423 149 - . . scaffold1335 WUBlastX LINE_Penelope 14980 15543 75 - . . scaffold1336 TRF Tandem_Repeat 2287 2321 70 + . . scaffold1336 WUBlastX LINE_Penelope 3881 4147 42 - . . scaffold1336 TRF Tandem_Repeat 4695 4795 147 + . . scaffold1336 GLEAN mRNA 7358 8047 0.998402 - . ID=CGI_10000691; scaffold1336 GLEAN promoter 8048 8637 0.998402 - . ID=CGI_10000691; scaffold1337 TRF Tandem_Repeat 37487 37515 58 + . . scaffold1337 TRF Tandem_Repeat 47848 47954 61 + . . scaffold1337 TRF Tandem_Repeat 52339 52373 52 + . . scaffold1337 TRF Tandem_Repeat 57332 57433 132 + . . scaffold1337 GLEAN mRNA 67348 76315 0.999981 - . ID=CGI_10012829; scaffold1337 TRF Tandem_Repeat 73369 73417 98 + . . scaffold1337 TRF Tandem_Repeat 74079 74167 178 + . . scaffold1337 GLEAN promoter 76316 77315 0.999981 - . ID=CGI_10012829; scaffold1337 TRF Tandem_Repeat 77485 77544 120 + . . scaffold1337 GLEAN promoter 78121 79120 0.935292 + . ID=CGI_10012830; scaffold1337 GLEAN mRNA 79121 94095 0.935292 + . ID=CGI_10012830; scaffold1337 TRF Tandem_Repeat 92095 92225 119 + . . scaffold1337 TRF Tandem_Repeat 93128 93176 98 + . . scaffold1337 TRF Tandem_Repeat 100208 100967 1213 + . . scaffold1337 GLEAN mRNA 112824 134929 0.762925 - . ID=CGI_10012831; scaffold1337 GLEAN promoter 114545 115544 0.593383 + . ID=CGI_10012832; scaffold1337 GLEAN mRNA 115545 116777 0.593383 + . ID=CGI_10012832; scaffold1337 TRF Tandem_Repeat 118101 118142 52 + . . scaffold1337 GLEAN promoter 119062 120061 0.333189 + . ID=CGI_10012833; scaffold1337 GLEAN mRNA 120062 142795 0.333189 + . ID=CGI_10012833; scaffold1337 TRF Tandem_Repeat 128013 128205 206 + . . scaffold1337 GLEAN promoter 134930 135929 0.762925 - . ID=CGI_10012831; scaffold1337 WUBlastX LINE_RTE-X 135831 136022 51 + . . scaffold1337 TRF Tandem_Repeat 139517 140178 805 + . . scaffold1337 GLEAN mRNA 143316 145043 0.999999 - . ID=CGI_10012834; scaffold1337 GLEAN promoter 144613 145612 0.993323 + . ID=CGI_10012835; scaffold1337 GLEAN promoter 145044 146043 0.999999 - . ID=CGI_10012834; scaffold1337 GLEAN mRNA 145613 149853 0.993323 + . ID=CGI_10012835; scaffold1337 GLEAN promoter 152618 153617 1 + . ID=CGI_10012836; scaffold1337 GLEAN mRNA 153618 156662 1 + . ID=CGI_10012836; scaffold1337 TRF Tandem_Repeat 155282 155379 126 + . . scaffold1337 GLEAN promoter 160802 161801 0.989003 + . ID=CGI_10012837; scaffold1337 TRF Tandem_Repeat 160888 160979 80 + . . scaffold1337 TRF Tandem_Repeat 161056 161215 187 + . . scaffold1337 TRF Tandem_Repeat 161445 161538 100 + . . scaffold1337 GLEAN mRNA 161802 162569 0.989003 + . ID=CGI_10012837; scaffold1337 TRF Tandem_Repeat 162287 162329 86 + . . scaffold1337 GLEAN mRNA 164428 175572 0.999661 - . ID=CGI_10012838; scaffold1337 TRF Tandem_Repeat 167621 167711 94 + . . scaffold1337 TRF Tandem_Repeat 167946 167980 70 + . . scaffold1337 TRF Tandem_Repeat 169108 169132 50 + . . scaffold1337 GLEAN promoter 172876 173875 0.643838 + . ID=CGI_10012839; scaffold1337 GLEAN mRNA 173876 183764 0.643838 + . ID=CGI_10012839; scaffold1337 GLEAN promoter 175573 176572 0.999661 - . ID=CGI_10012838; scaffold1337 GLEAN mRNA 183667 193119 0.992795 - . ID=CGI_10012840; scaffold1337 TRF Tandem_Repeat 190362 190420 57 + . . scaffold1337 GLEAN promoter 192180 193179 0.989405 + . ID=CGI_10012841; scaffold1337 GLEAN promoter 193120 194119 0.992795 - . ID=CGI_10012840; scaffold1337 GLEAN mRNA 193180 200018 0.989405 + . ID=CGI_10012841; scaffold1337 TRF Tandem_Repeat 202312 202614 363 + . . scaffold1337 WUBlastX DNA_TcMar-Tc1 228119 228457 60 + . . scaffold1337 WUBlastX DNA_TcMar-Tc1 228176 228457 87 + . . scaffold1337 WUBlastX DNA_TcMar-Tc1 228493 228786 46 + . . scaffold1337 WUBlastX DNA_TcMar-Tc1 228565 228729 58 + . . scaffold1337 WUBlastX DNA_TcMar-Tc1 228655 228831 37 + . . scaffold1337 TRF Tandem_Repeat 231274 231318 90 + . . scaffold1337 TRF Tandem_Repeat 246165 246216 104 + . . scaffold1337 TRF Tandem_Repeat 246450 246493 54 + . . scaffold1337 TRF Tandem_Repeat 247840 248869 1485 + . . scaffold1337 TRF Tandem_Repeat 251713 251803 123 + . . scaffold1337 TRF Tandem_Repeat 263617 263670 90 + . . scaffold1337 WUBlastX LINE_L1-Tx1 280080 280502 214 - . . scaffold1337 WUBlastX LINE_L1-Tx1 280480 281085 346 - . . scaffold1337 GLEAN mRNA 281481 282728 0.999981 - . ID=CGI_10012842; scaffold1337 WUBlastX LINE_L2 281907 282356 54 - . . scaffold1337 WUBlastX LINE_L1 281970 282722 25 - . . scaffold1337 WUBlastX LINE_L2 281979 282545 82 - . . scaffold1337 GLEAN promoter 282729 283728 0.999981 - . ID=CGI_10012842; scaffold1337 TRF Tandem_Repeat 293974 294025 61 + . . scaffold1337 TRF Tandem_Repeat 296525 296710 115 + . . scaffold1337 TRF Tandem_Repeat 296525 296697 152 + . . scaffold1337 WUBlastX LINE_L1-Tx1 299197 299295 21 - . . scaffold1337 WUBlastX LINE_L1 299489 300346 90 - . . scaffold1337 WUBlastX LINE_L1-Tx1 299630 301324 662 - . . scaffold1337 WUBlastX LINE_L1 301336 301938 99 - . . scaffold1337 WUBlastX LINE_L1 301342 301686 104 - . . scaffold1337 WUBlastX LINE_L1-Tx1 301864 301956 33 - . . scaffold1337 WUBlastX LINE_L1-Tx1 301976 302734 51 - . . scaffold1337 WUBlastX LINE_L1-Tx1 302066 302665 155 - . . scaffold1337 WUBlastX LINE_L1-Tx1 303121 303903 188 - . . scaffold1337 WUBlastX LINE_CR1 303256 303909 214 - . . scaffold1337 TRF Tandem_Repeat 308055 308090 63 + . . scaffold1337 GLEAN mRNA 314324 320429 0.937472 - . ID=CGI_10012843; scaffold1337 GLEAN promoter 320430 321429 0.937472 - . ID=CGI_10012843; scaffold1337 GLEAN promoter 321674 322673 1 + . ID=CGI_10012844; scaffold1337 GLEAN mRNA 322674 323072 1 + . ID=CGI_10012844; scaffold1337 TRF Tandem_Repeat 324893 325572 854 + . . scaffold1337 GLEAN mRNA 330650 341044 0.999409 - . ID=CGI_10012845; scaffold1337 TRF Tandem_Repeat 333710 334519 755 + . . scaffold1337 GLEAN promoter 337039 338038 1 + . ID=CGI_10012846; scaffold1337 GLEAN mRNA 338039 341211 1 + . ID=CGI_10012846; scaffold1337 TRF Tandem_Repeat 340213 340270 98 + . . scaffold1337 GLEAN promoter 341045 341216 0.999409 - . ID=CGI_10012845; scaffold1338 WUBlastX LINE_RTE-X 2776 3303 132 - . . scaffold1338 GLEAN promoter 3908 4907 0.999445 + . ID=CGI_10001340; scaffold1338 GLEAN mRNA 4908 16606 0.999445 + . ID=CGI_10001340; scaffold1338 GLEAN mRNA 11841 17335 1 - . ID=CGI_10001341; scaffold1338 GLEAN promoter 17336 18335 1 - . ID=CGI_10001341; scaffold1338 TRF Tandem_Repeat 17609 17650 84 + . . scaffold1338 TRF Tandem_Repeat 18771 19037 329 + . . scaffold1338 TRF Tandem_Repeat 19441 19658 284 + . . scaffold1339 GLEAN promoter 164 1163 0.998895 + . ID=CGI_10003376; scaffold1339 GLEAN mRNA 1164 43021 0.998895 + . ID=CGI_10003376; scaffold1339 GLEAN mRNA 9934 10344 0.999934 - . ID=CGI_10003377; scaffold1339 GLEAN promoter 10345 11344 0.999934 - . ID=CGI_10003377; scaffold1339 GLEAN promoter 60461 61460 1 + . ID=CGI_10003378; scaffold1339 GLEAN mRNA 61461 67814 1 + . ID=CGI_10003378; scaffold1340 GLEAN promoter 1 616 1 + . ID=CGI_10001404; scaffold1340 GLEAN mRNA 617 1486 1 + . ID=CGI_10001404; scaffold1340 GLEAN mRNA 4642 6809 1 - . ID=CGI_10001405; scaffold1340 WUBlastX DNA_hAT 4669 6294 404 - . . scaffold1340 WUBlastX DNA_hAT 6678 6809 27 - . . scaffold1340 GLEAN promoter 6810 7809 1 - . ID=CGI_10001405; scaffold1340 GLEAN promoter 7411 8410 1 + . ID=CGI_10001406; scaffold1340 GLEAN mRNA 8411 18369 1 + . ID=CGI_10001406; scaffold1340 GLEAN mRNA 17447 22077 1 - . ID=CGI_10001407; scaffold1340 GLEAN promoter 22078 22079 1 - . ID=CGI_10001407; scaffold1341 GLEAN promoter 3451 4450 0.992186 + . ID=CGI_10004662; scaffold1341 GLEAN mRNA 4451 30218 0.992186 + . ID=CGI_10004662; scaffold1341 WUBlastX LINE_L1-Tx1 5529 5801 21 - . . scaffold1341 WUBlastX LINE_L1 5598 5750 23 - . . scaffold1341 TRF Tandem_Repeat 7033 7072 62 + . . scaffold1341 TRF Tandem_Repeat 7062 7121 102 + . . scaffold1341 TRF Tandem_Repeat 12761 12807 67 + . . scaffold1341 TRF Tandem_Repeat 14318 14361 61 + . . scaffold1341 WUBlastX LINE_L2 21653 22537 93 - . . scaffold1341 WUBlastX LINE_L2 22343 22594 57 - . . scaffold1341 WUBlastX LINE_L2 22346 22552 100 - . . scaffold1341 GLEAN mRNA 24381 25111 1 - . ID=CGI_10004663; scaffold1341 GLEAN promoter 25112 26111 1 - . ID=CGI_10004663; scaffold1341 TRF Tandem_Repeat 26895 26944 100 + . . scaffold1341 GLEAN mRNA 35478 50758 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 37139 37532 522 + . . scaffold1341 TRF Tandem_Repeat 37555 37723 223 + . . scaffold1341 TRF Tandem_Repeat 38216 38425 163 + . . scaffold1341 TRF Tandem_Repeat 39684 39851 219 + . . scaffold1341 TRF Tandem_Repeat 39846 40842 1401 + . . scaffold1341 TRF Tandem_Repeat 47929 48858 1446 + . . scaffold1341 TRF Tandem_Repeat 49472 50551 1567 + . . scaffold1341 GLEAN promoter 50759 51758 0.931127 - . ID=CGI_10004664; scaffold1341 TRF Tandem_Repeat 60024 60263 401 + . . scaffold1341 GLEAN promoter 67043 68042 1 + . ID=CGI_10004665; scaffold1341 GLEAN mRNA 68043 91984 1 + . ID=CGI_10004665; scaffold1341 TRF Tandem_Repeat 73014 73121 207 + . . scaffold1341 TRF Tandem_Repeat 79499 79711 345 + . . scaffold1341 GLEAN promoter 105144 106143 0.999922 + . ID=CGI_10004666; scaffold1341 GLEAN mRNA 106144 107418 0.999922 + . ID=CGI_10004666; scaffold1342 TRF Tandem_Repeat 1569 1807 361 + . . scaffold1342 TRF Tandem_Repeat 3023 3174 108 + . . scaffold1342 TRF Tandem_Repeat 3173 3393 160 + . . scaffold1342 TRF Tandem_Repeat 3178 3381 97 + . . scaffold1342 TRF Tandem_Repeat 3243 3393 162 + . . scaffold1342 WUBlastX LINE_CR1-L2 4122 4238 52 + . . scaffold1342 WUBlastX LINE_CR1-L2 4143 4262 61 + . . scaffold1342 WUBlastX LINE_L2 4279 4758 53 + . . scaffold1342 WUBlastX LINE_CR1-L2 4573 4758 59 + . . scaffold1343 GLEAN promoter 1 35 1 + . ID=CGI_10005044; scaffold1343 GLEAN mRNA 36 8762 1 + . ID=CGI_10005044; scaffold1343 TRF Tandem_Repeat 8242 8299 116 + . . scaffold1343 WUBlastX LINE_RTE-X 9770 10171 27 + . . scaffold1343 WUBlastX LINE_RTE-X 9869 10171 36 + . . scaffold1343 WUBlastX LINE_RTE-X 9926 10069 63 + . . scaffold1343 WUBlastX LINE_RTE-X 9926 10171 46 + . . scaffold1343 WUBlastX LINE_RTE-X 9929 10111 61 + . . scaffold1343 WUBlastX LINE_Penelope 14926 15066 74 + . . scaffold1343 WUBlastX LINE_Penelope 14926 15102 63 + . . scaffold1343 GLEAN promoter 29181 30180 0.543666 + . ID=CGI_10005045; scaffold1343 TRF Tandem_Repeat 29570 29600 53 + . . scaffold1343 GLEAN mRNA 30181 33626 0.543666 + . ID=CGI_10005045; scaffold1343 TRF Tandem_Repeat 31507 31542 72 + . . scaffold1343 WUBlastX LTR_Gypsy 35406 36137 147 + . . scaffold1343 WUBlastX LTR_Gypsy 35520 36419 214 + . . scaffold1343 WUBlastX LTR_Gypsy-Cigr 36452 36655 64 + . . scaffold1343 WUBlastX LTR_Gypsy 36518 39928 1952 + . . scaffold1343 WUBlastX LTR_Gypsy 39878 39952 20 + . . scaffold1343 GLEAN promoter 40305 41304 0.999372 + . ID=CGI_10005046; scaffold1343 GLEAN promoter 40720 41719 0.324842 + . ID=CGI_10005047; scaffold1343 GLEAN mRNA 41305 41616 0.999372 + . ID=CGI_10005046; scaffold1343 GLEAN mRNA 41720 63602 0.324842 + . ID=CGI_10005047; scaffold1343 TRF Tandem_Repeat 50479 50531 106 + . . scaffold1343 TRF Tandem_Repeat 52238 52311 112 + . . scaffold1343 TRF Tandem_Repeat 56588 56655 136 + . . scaffold1343 TRF Tandem_Repeat 56794 56839 83 + . . scaffold1343 TRF Tandem_Repeat 70141 70188 96 + . . scaffold1343 WUBlastX LINE_R2-Hero 78072 78350 66 + . . scaffold1343 WUBlastX LINE_R2 78165 79274 420 + . . scaffold1343 TRF Tandem_Repeat 86594 87379 968 + . . scaffold1343 TRF Tandem_Repeat 90296 90404 123 + . . scaffold1343 GLEAN promoter 93192 94191 0.999675 + . ID=CGI_10005048; scaffold1343 GLEAN mRNA 94192 115140 0.999675 + . ID=CGI_10005048; scaffold1343 TRF Tandem_Repeat 95103 95269 274 + . . scaffold1343 TRF Tandem_Repeat 96001 96107 187 + . . scaffold1343 WUBlastX DNA_Maverick 98238 99761 140 + . . scaffold1343 WUBlastX DNA_Maverick 99084 100607 238 + . . scaffold1343 WUBlastX DNA_Maverick 99765 100601 305 + . . scaffold1343 WUBlastX DNA_Maverick 99903 100589 351 + . . scaffold1343 WUBlastX DNA_Maverick 100053 100784 194 + . . scaffold1343 WUBlastX DNA_Maverick 100638 100958 99 + . . scaffold1343 TRF Tandem_Repeat 101156 101236 135 + . . scaffold1343 TRF Tandem_Repeat 102312 102464 148 + . . scaffold1343 TRF Tandem_Repeat 102988 103942 1213 + . . scaffold1343 TRF Tandem_Repeat 102988 103942 1359 + . . scaffold1343 TRF Tandem_Repeat 102988 103942 1386 + . . scaffold1343 TRF Tandem_Repeat 109666 109703 67 + . . scaffold1343 GLEAN mRNA 110417 115565 0.999674 - . ID=CGI_10005049; scaffold1343 GLEAN promoter 115566 116565 0.999674 - . ID=CGI_10005049; scaffold1343 TRF Tandem_Repeat 116249 116311 126 + . . scaffold1345 GLEAN mRNA 346 1089 0.990509 - . ID=CGI_10016278; scaffold1345 GLEAN promoter 1090 2089 0.990509 - . ID=CGI_10016278; scaffold1345 WUBlastX LTR_Pao 6945 7382 397 - . . scaffold1345 TRF Tandem_Repeat 23719 23779 86 + . . scaffold1345 TRF Tandem_Repeat 34452 34483 64 + . . scaffold1345 TRF Tandem_Repeat 53135 53226 168 + . . scaffold1345 TRF Tandem_Repeat 55130 55197 118 + . . scaffold1345 GLEAN mRNA 82558 85256 0.572888 - . ID=CGI_10016279; scaffold1345 GLEAN promoter 85257 86256 0.572888 - . ID=CGI_10016279; scaffold1345 GLEAN mRNA 85689 85952 0.809448 - . ID=CGI_10016280; scaffold1345 GLEAN promoter 85953 86952 0.809448 - . ID=CGI_10016280; scaffold1345 WUBlastX LINE_Penelope 88908 89330 23 - . . scaffold1345 TRF Tandem_Repeat 92876 92929 99 + . . scaffold1345 TRF Tandem_Repeat 115311 115397 54 + . . scaffold1345 TRF Tandem_Repeat 127187 127584 760 + . . scaffold1345 TRF Tandem_Repeat 134079 134985 1449 + . . scaffold1345 TRF Tandem_Repeat 137430 138896 2180 + . . scaffold1345 GLEAN mRNA 145864 161252 0.810287 - . ID=CGI_10016281; scaffold1345 TRF Tandem_Repeat 156894 156939 92 + . . scaffold1345 TRF Tandem_Repeat 158844 158876 66 + . . scaffold1345 GLEAN promoter 161253 162252 0.810287 - . ID=CGI_10016281; scaffold1345 GLEAN mRNA 163355 170551 0.999676 - . ID=CGI_10016282; scaffold1345 GLEAN promoter 170552 171551 0.999676 - . ID=CGI_10016282; scaffold1345 WUBlastX LINE_Penelope 178525 178731 59 - . . scaffold1345 WUBlastX LINE_Penelope 179606 179719 74 - . . scaffold1345 WUBlastX LINE_Penelope 179740 179868 32 - . . scaffold1345 TRF Tandem_Repeat 184531 184569 78 + . . scaffold1345 WUBlastX DNA_IS4EU 185087 185347 21 + . . scaffold1345 WUBlastX DNA_IS4EU 186265 186435 48 + . . scaffold1345 WUBlastX DNA_IS4EU 186778 186984 39 + . . scaffold1345 WUBlastX DNA_Kolobok-IS4 186960 187199 75 + . . scaffold1345 WUBlastX DNA_Kolobok-IS4 187020 187265 54 + . . scaffold1345 TRF Tandem_Repeat 192748 192782 70 + . . scaffold1345 TRF Tandem_Repeat 192780 192839 102 + . . scaffold1345 TRF Tandem_Repeat 197091 197135 90 + . . scaffold1345 TRF Tandem_Repeat 197222 197391 196 + . . scaffold1345 TRF Tandem_Repeat 206908 207141 263 + . . scaffold1345 TRF Tandem_Repeat 207765 207829 94 + . . scaffold1345 TRF Tandem_Repeat 214328 214466 138 + . . scaffold1345 TRF Tandem_Repeat 214518 214615 74 + . . scaffold1345 TRF Tandem_Repeat 217026 217095 122 + . . scaffold1345 TRF Tandem_Repeat 218472 218524 106 + . . scaffold1345 TRF Tandem_Repeat 232558 232595 76 + . . scaffold1345 TRF Tandem_Repeat 233506 233748 369 + . . scaffold1345 TRF Tandem_Repeat 234134 234250 175 + . . scaffold1345 TRF Tandem_Repeat 234630 234686 96 + . . scaffold1345 TRF Tandem_Repeat 236920 236991 144 + . . scaffold1345 TRF Tandem_Repeat 237204 237296 186 + . . scaffold1345 TRF Tandem_Repeat 237472 237575 199 + . . scaffold1345 TRF Tandem_Repeat 239754 239880 139 + . . scaffold1345 GLEAN mRNA 239892 251479 1 - . ID=CGI_10016283; scaffold1345 WUBlastX LTR_Gypsy 239985 240275 105 - . . scaffold1345 WUBlastX LTR_Gypsy 240036 240263 116 - . . scaffold1345 WUBlastX LTR_Gypsy 240081 240335 145 - . . scaffold1345 WUBlastX LTR_Gypsy 240230 240706 179 - . . scaffold1345 WUBlastX LTR_Gypsy 240260 240661 205 - . . scaffold1345 WUBlastX LTR_Gypsy 240272 240805 153 - . . scaffold1345 WUBlastX LTR_Gypsy 241500 241607 77 - . . scaffold1345 WUBlastX LTR_Gypsy 241500 241631 58 - . . scaffold1345 WUBlastX LTR_Gypsy 241565 241699 23 - . . scaffold1345 WUBlastX LTR_Gypsy 242261 242401 24 - . . scaffold1345 WUBlastX LTR_Gypsy 242357 242401 29 - . . scaffold1345 WUBlastX LTR_Gypsy 242416 242862 180 - . . scaffold1345 WUBlastX LTR_Gypsy 243484 243612 29 - . . scaffold1345 WUBlastX LTR_Gypsy 243514 243759 59 - . . scaffold1345 TRF Tandem_Repeat 245878 246106 440 + . . scaffold1345 GLEAN promoter 251480 252479 1 - . ID=CGI_10016283; scaffold1345 TRF Tandem_Repeat 251730 251769 80 + . . scaffold1345 TRF Tandem_Repeat 251835 251891 105 + . . scaffold1345 TRF Tandem_Repeat 252688 252739 104 + . . scaffold1345 TRF Tandem_Repeat 253501 253542 75 + . . scaffold1345 TRF Tandem_Repeat 254511 254557 85 + . . scaffold1345 TRF Tandem_Repeat 259359 259389 62 + . . scaffold1345 TRF Tandem_Repeat 261404 261451 96 + . . scaffold1345 TRF Tandem_Repeat 261555 261670 187 + . . scaffold1345 WUBlastX LINE_L1-Tx1 267703 268491 57 + . . scaffold1345 WUBlastX LINE_L1-Tx1 267718 268383 102 + . . scaffold1345 WUBlastX LINE_L1-Tx1 272085 272420 55 - . . scaffold1345 WUBlastX LINE_L1 273212 273322 25 - . . scaffold1345 GLEAN mRNA 274800 277691 0.643654 - . ID=CGI_10016284; scaffold1345 GLEAN promoter 277539 278538 0.999979 + . ID=CGI_10016285; scaffold1345 GLEAN promoter 277692 278691 0.643654 - . ID=CGI_10016284; scaffold1345 GLEAN mRNA 278539 281467 0.999979 + . ID=CGI_10016285; scaffold1345 WUBlastX LTR_DIRS 284505 285608 373 + . . scaffold1345 WUBlastX LTR_DIRS 285538 285813 85 + . . scaffold1345 WUBlastX LTR_Gypsy 285736 285852 21 + . . scaffold1345 WUBlastX LTR_Gypsy 285766 285822 27 + . . scaffold1345 WUBlastX LTR_DIRS 285842 286558 208 + . . scaffold1345 TRF Tandem_Repeat 286653 287587 1401 + . . scaffold1345 WUBlastX LTR_DIRS 287953 288591 284 + . . scaffold1345 TRF Tandem_Repeat 289369 289394 52 + . . scaffold1345 TRF Tandem_Repeat 324660 324703 61 + . . scaffold1345 TRF Tandem_Repeat 326983 327042 120 + . . scaffold1345 TRF Tandem_Repeat 340971 341007 74 + . . scaffold1345 WUBlastX DNA_Sola 349436 349795 54 - . . scaffold1345 WUBlastX DNA_Sola 350238 350318 40 - . . scaffold1345 TRF Tandem_Repeat 353101 353910 935 + . . scaffold1345 GLEAN mRNA 356174 362378 0.989078 - . ID=CGI_10016286; scaffold1345 GLEAN promoter 362379 363378 0.989078 - . ID=CGI_10016286; scaffold1345 GLEAN mRNA 363757 380659 0.999947 - . ID=CGI_10016287; scaffold1345 TRF Tandem_Repeat 366786 367046 495 + . . scaffold1345 GLEAN promoter 380660 381659 0.999947 - . ID=CGI_10016287; scaffold1345 TRF Tandem_Repeat 388395 389272 1302 + . . scaffold1345 GLEAN mRNA 390905 398842 0.996685 - . ID=CGI_10016288; scaffold1345 TRF Tandem_Repeat 393161 393386 326 + . . scaffold1345 TRF Tandem_Repeat 393168 393378 287 + . . scaffold1345 TRF Tandem_Repeat 393204 393279 51 + . . scaffold1345 TRF Tandem_Repeat 394156 394394 301 + . . scaffold1345 TRF Tandem_Repeat 395601 395641 82 + . . scaffold1345 WUBlastX LINE_L1 396339 396623 31 - . . scaffold1345 GLEAN promoter 398843 399842 0.996685 - . ID=CGI_10016288; scaffold1345 GLEAN mRNA 402550 412625 0.544852 - . ID=CGI_10016289; scaffold1345 TRF Tandem_Repeat 405358 405384 54 + . . scaffold1345 GLEAN promoter 412626 413625 0.544852 - . ID=CGI_10016289; scaffold1345 TRF Tandem_Repeat 414356 414406 52 + . . scaffold1345 TRF Tandem_Repeat 414803 414865 117 + . . scaffold1345 WUBlastX LINE_L1-Tx1 415276 419079 1939 - . . scaffold1345 WUBlastX LINE_L2 419390 420112 130 - . . scaffold1345 WUBlastX LINE_L1 419525 420328 49 - . . scaffold1345 GLEAN mRNA 451290 459325 0.998311 - . ID=CGI_10016290; scaffold1345 TRF Tandem_Repeat 455311 455348 76 + . . scaffold1345 GLEAN promoter 459326 460325 0.998311 - . ID=CGI_10016290; scaffold1347 WUBlastX DNA_hAT-Tip100 2655 2831 64 - . . scaffold1347 TRF Tandem_Repeat 4198 5097 1397 + . . scaffold1347 WUBlastX DNA_Harbinger 13492 14007 196 + . . scaffold1347 WUBlastX DNA_Harbinger 13615 14004 227 + . . scaffold1347 WUBlastX DNA_Harbinger 14007 14306 88 + . . scaffold1347 WUBlastX DNA_Harbinger 14064 14429 139 + . . scaffold1347 TRF Tandem_Repeat 17827 18569 1170 + . . scaffold1347 TRF Tandem_Repeat 19317 19367 57 + . . scaffold1347 GLEAN mRNA 19889 21255 0.997166 - . ID=CGI_10012971; scaffold1347 GLEAN promoter 21256 22255 0.997166 - . ID=CGI_10012971; scaffold1347 GLEAN mRNA 21277 29429 0.935835 - . ID=CGI_10012972; scaffold1347 WUBlastX LTR_Gypsy-Cigr 21728 21850 24 + . . scaffold1347 WUBlastX LTR_Gypsy 21903 22289 70 + . . scaffold1347 WUBlastX LTR_Gypsy-Cigr 21927 22226 94 + . . scaffold1347 WUBlastX DNA_IS4EU 23753 24178 166 + . . scaffold1347 WUBlastX DNA_IS4EU 24180 24299 42 + . . scaffold1347 WUBlastX DNA_IS4EU 24824 25177 32 + . . scaffold1347 WUBlastX DNA_IS4EU 24887 25108 40 + . . scaffold1347 WUBlastX DNA_IS4EU 25542 25673 50 + . . scaffold1347 WUBlastX DNA_IS4EU 25949 26350 183 + . . scaffold1347 WUBlastX DNA_IS4EU 26388 26600 43 + . . scaffold1347 WUBlastX DNA_IS4EU 26433 26867 97 + . . scaffold1347 WUBlastX DNA_IS4EU 27301 28836 869 - . . scaffold1347 GLEAN promoter 29430 30429 0.935835 - . ID=CGI_10012972; scaffold1347 TRF Tandem_Repeat 48869 48918 100 + . . scaffold1347 TRF Tandem_Repeat 49675 49796 145 + . . scaffold1347 TRF Tandem_Repeat 50656 50886 299 + . . scaffold1347 TRF Tandem_Repeat 50670 50886 266 + . . scaffold1347 GLEAN promoter 52466 53465 0.999998 + . ID=CGI_10012973; scaffold1347 GLEAN mRNA 53466 58776 0.999998 + . ID=CGI_10012973; scaffold1347 TRF Tandem_Repeat 53564 53601 76 + . . scaffold1347 TRF Tandem_Repeat 56200 56236 51 + . . scaffold1347 WUBlastX LTR_Gypsy 65410 65730 132 - . . scaffold1347 WUBlastX LTR_Gypsy 65479 65880 401 - . . scaffold1347 TRF Tandem_Repeat 98914 98972 118 + . . scaffold1347 WUBlastX DNA_TcMar-Tc1 100122 100886 68 - . . scaffold1347 WUBlastX DNA_TcMar-Tc1 100904 100972 25 - . . scaffold1347 TRF Tandem_Repeat 124886 124944 109 + . . scaffold1347 TRF Tandem_Repeat 128557 128691 85 + . . scaffold1347 TRF Tandem_Repeat 129684 129797 106 + . . scaffold1347 GLEAN promoter 132564 133563 0.49238 + . ID=CGI_10012974; scaffold1347 GLEAN mRNA 133564 144148 0.49238 + . ID=CGI_10012974; scaffold1347 WUBlastX LINE_RTE-X 141555 141758 114 + . . scaffold1347 WUBlastX LINE_RTE-X 141609 141809 88 + . . scaffold1347 WUBlastX LINE_RTE-X 141761 142000 58 + . . scaffold1347 WUBlastX LINE_RTE-X 141865 142209 57 + . . scaffold1347 WUBlastX LINE_RTE-X 142012 142251 41 + . . scaffold1347 WUBlastX LINE_L2 144381 145088 295 - . . scaffold1347 WUBlastX LINE_L2 144738 145205 22 - . . scaffold1347 WUBlastX LINE_L2 145576 145659 22 - . . scaffold1347 WUBlastX LINE_RTE-X 148543 149094 37 + . . scaffold1347 WUBlastX LINE_RTE-BovB 148635 148769 50 + . . scaffold1347 WUBlastX LINE_RTE-X 148780 149115 85 + . . scaffold1347 WUBlastX LINE_RTE-X 149058 149189 88 + . . scaffold1347 WUBlastX LINE_RTE-X 149061 149246 72 + . . scaffold1347 WUBlastX LINE_RTE-X 151555 151674 44 + . . scaffold1347 WUBlastX LINE_RTE-X 151662 151901 73 + . . scaffold1347 WUBlastX LINE_RTE-X 151662 152003 44 + . . scaffold1347 WUBlastX LINE_L2 151731 151934 73 + . . scaffold1347 WUBlastX LINE_RTE-X 152542 152670 28 + . . scaffold1347 WUBlastX LINE_RTE-X 152563 152682 30 + . . scaffold1347 WUBlastX LINE_RTE-X 152623 152670 32 + . . scaffold1347 WUBlastX LINE_RTE-X 152672 153130 93 + . . scaffold1347 WUBlastX LINE_RTE-X 152735 153286 82 + . . scaffold1347 TRF Tandem_Repeat 157801 157825 50 + . . scaffold1347 TRF Tandem_Repeat 159458 159557 119 + . . scaffold1347 TRF Tandem_Repeat 159580 159679 112 + . . scaffold1347 GLEAN mRNA 160193 162159 0.814115 - . ID=CGI_10012975; scaffold1347 GLEAN promoter 162160 163159 0.814115 - . ID=CGI_10012975; scaffold1347 TRF Tandem_Repeat 168186 168230 90 + . . scaffold1347 TRF Tandem_Repeat 170412 170445 68 + . . scaffold1347 TRF Tandem_Repeat 188943 188989 94 + . . scaffold1347 TRF Tandem_Repeat 189497 189553 69 + . . scaffold1347 GLEAN promoter 190595 191594 0.218139 + . ID=CGI_10012977; scaffold1347 GLEAN mRNA 191120 191596 0.999479 - . ID=CGI_10012976; scaffold1347 GLEAN mRNA 191595 210560 0.218139 + . ID=CGI_10012977; scaffold1347 GLEAN promoter 191597 192596 0.999479 - . ID=CGI_10012976; scaffold1347 TRF Tandem_Repeat 197081 197135 110 + . . scaffold1347 TRF Tandem_Repeat 197252 197302 93 + . . scaffold1347 TRF Tandem_Repeat 198922 198971 100 + . . scaffold1347 GLEAN promoter 209851 210850 0.828787 + . ID=CGI_10012978; scaffold1347 GLEAN mRNA 210851 219449 0.828787 + . ID=CGI_10012978; scaffold1347 TRF Tandem_Repeat 223340 223379 80 + . . scaffold1347 TRF Tandem_Repeat 227719 227764 83 + . . scaffold1347 GLEAN promoter 236751 237750 0.985538 + . ID=CGI_10012979; scaffold1347 GLEAN mRNA 237751 258034 0.985538 + . ID=CGI_10012979; scaffold1347 TRF Tandem_Repeat 253751 254334 600 + . . scaffold1347 TRF Tandem_Repeat 256503 256663 171 + . . scaffold1347 TRF Tandem_Repeat 256671 256779 103 + . . scaffold1347 TRF Tandem_Repeat 256844 256931 90 + . . scaffold1347 GLEAN mRNA 263026 267496 1 - . ID=CGI_10012980; scaffold1347 TRF Tandem_Repeat 265172 265268 103 + . . scaffold1347 TRF Tandem_Repeat 265532 265567 72 + . . scaffold1347 TRF Tandem_Repeat 266478 266510 50 + . . scaffold1347 TRF Tandem_Repeat 266754 266869 78 + . . scaffold1347 TRF Tandem_Repeat 266754 266858 94 + . . scaffold1347 GLEAN promoter 267497 268496 1 - . ID=CGI_10012980; scaffold1347 GLEAN mRNA 267930 270710 0.423749 - . ID=CGI_10012981; scaffold1347 GLEAN promoter 270124 271123 1 + . ID=CGI_10012982; scaffold1347 GLEAN promoter 270711 271710 0.423749 - . ID=CGI_10012981; scaffold1347 GLEAN mRNA 271124 276856 1 + . ID=CGI_10012982; scaffold1347 GLEAN mRNA 280238 294607 0.791406 - . ID=CGI_10012983; scaffold1347 GLEAN promoter 294608 295607 0.791406 - . ID=CGI_10012983; scaffold1347 TRF Tandem_Repeat 299063 299162 139 + . . scaffold1347 GLEAN promoter 314464 315463 0.924019 + . ID=CGI_10012984; scaffold1347 GLEAN mRNA 315464 333991 0.924019 + . ID=CGI_10012984; scaffold1347 TRF Tandem_Repeat 317032 317057 52 + . . scaffold1347 WUBlastX DNA_Maverick 325152 325892 458 + . . scaffold1347 WUBlastX DNA_Maverick 325326 326024 261 + . . scaffold1347 WUBlastX DNA_Maverick 325913 326254 213 + . . scaffold1347 WUBlastX DNA_Maverick 326289 326441 27 + . . scaffold1347 WUBlastX DNA_Maverick 326319 326438 40 + . . scaffold1347 WUBlastX DNA_Maverick 326358 326495 29 + . . scaffold1347 WUBlastX DNA_Maverick 326475 326669 32 + . . scaffold1347 WUBlastX DNA_En-Spm 335207 335368 22 + . . scaffold1347 WUBlastX DNA_En-Spm 335362 336300 323 + . . scaffold1347 WUBlastX DNA_En-Spm 335362 335946 405 + . . scaffold1348 GLEAN promoter 253 1252 0.704074 + . ID=CGI_10008055; scaffold1348 TRF Tandem_Repeat 390 435 92 + . . scaffold1348 GLEAN mRNA 1253 4023 0.704074 + . ID=CGI_10008055; scaffold1348 GLEAN promoter 4389 5388 1 + . ID=CGI_10008056; scaffold1348 GLEAN mRNA 5389 5700 1 + . ID=CGI_10008056; scaffold1348 GLEAN promoter 6570 7569 1 + . ID=CGI_10008058; scaffold1348 GLEAN mRNA 6931 7302 1 - . ID=CGI_10008057; scaffold1348 GLEAN promoter 7303 8302 1 - . ID=CGI_10008057; scaffold1348 GLEAN mRNA 7570 7950 1 + . ID=CGI_10008058; scaffold1348 GLEAN promoter 9131 10130 1 + . ID=CGI_10008059; scaffold1348 TRF Tandem_Repeat 9268 9313 92 + . . scaffold1348 GLEAN mRNA 10131 10721 1 + . ID=CGI_10008059; scaffold1348 GLEAN promoter 11491 12490 0.891985 + . ID=CGI_10008060; scaffold1348 GLEAN mRNA 12491 12901 0.891985 + . ID=CGI_10008060; scaffold1348 GLEAN promoter 13203 14202 1 + . ID=CGI_10008061; scaffold1348 TRF Tandem_Repeat 13768 13829 65 + . . scaffold1348 GLEAN mRNA 14203 14514 1 + . ID=CGI_10008061; scaffold1348 GLEAN promoter 15889 16888 1 + . ID=CGI_10008063; scaffold1348 GLEAN mRNA 16250 16621 1 - . ID=CGI_10008062; scaffold1348 GLEAN promoter 16622 17621 1 - . ID=CGI_10008062; scaffold1348 GLEAN mRNA 16889 17269 1 + . ID=CGI_10008063; scaffold1348 GLEAN promoter 40116 41115 0.986255 + . ID=CGI_10008064; scaffold1348 GLEAN mRNA 41116 47122 0.986255 + . ID=CGI_10008064; scaffold1348 TRF Tandem_Repeat 44244 44288 90 + . . scaffold1348 TRF Tandem_Repeat 45931 45977 94 + . . scaffold1348 TRF Tandem_Repeat 47721 47752 64 + . . scaffold1348 GLEAN promoter 48886 49885 1 + . ID=CGI_10008065; scaffold1348 GLEAN mRNA 49886 50266 1 + . ID=CGI_10008065; scaffold1348 GLEAN promoter 53317 54316 1 + . ID=CGI_10008066; scaffold1348 GLEAN mRNA 54317 54727 1 + . ID=CGI_10008066; scaffold1348 GLEAN promoter 54798 55797 1 + . ID=CGI_10008067; scaffold1348 TRF Tandem_Repeat 55362 55424 60 + . . scaffold1348 GLEAN mRNA 55798 56109 1 + . ID=CGI_10008067; scaffold1348 GLEAN promoter 56667 57666 1 + . ID=CGI_10008069; scaffold1348 GLEAN mRNA 57028 57399 1 - . ID=CGI_10008068; scaffold1348 GLEAN promoter 57400 58399 1 - . ID=CGI_10008068; scaffold1348 GLEAN mRNA 57667 58047 1 + . ID=CGI_10008069; scaffold1348 GLEAN promoter 58535 59534 1 + . ID=CGI_10008070; scaffold1348 GLEAN mRNA 59535 60134 1 + . ID=CGI_10008070; scaffold1348 GLEAN promoter 60856 61855 1 + . ID=CGI_10008071; scaffold1348 TRF Tandem_Repeat 60867 60924 116 + . . scaffold1348 GLEAN mRNA 61856 62266 1 + . ID=CGI_10008071; scaffold1348 GLEAN promoter 62335 63334 1 + . ID=CGI_10008072; scaffold1348 GLEAN mRNA 63335 63646 1 + . ID=CGI_10008072; scaffold1348 GLEAN promoter 64217 65216 1 + . ID=CGI_10008074; scaffold1348 GLEAN mRNA 64578 64949 1 - . ID=CGI_10008073; scaffold1348 GLEAN promoter 64950 65949 1 - . ID=CGI_10008073; scaffold1348 GLEAN mRNA 65217 65597 1 + . ID=CGI_10008074; scaffold1348 GLEAN promoter 66075 67074 1 + . ID=CGI_10008075; scaffold1348 GLEAN mRNA 67075 67674 1 + . ID=CGI_10008075; scaffold1348 GLEAN promoter 68396 69395 1 + . ID=CGI_10008076; scaffold1348 TRF Tandem_Repeat 68407 68464 116 + . . scaffold1348 GLEAN mRNA 69396 69806 1 + . ID=CGI_10008076; scaffold1348 GLEAN promoter 69875 70874 1 + . ID=CGI_10008077; scaffold1348 GLEAN mRNA 70875 71186 1 + . ID=CGI_10008077; scaffold1348 GLEAN promoter 71757 72756 1 + . ID=CGI_10008079; scaffold1348 GLEAN mRNA 72118 72489 1 - . ID=CGI_10008078; scaffold1348 GLEAN promoter 72490 73489 1 - . ID=CGI_10008078; scaffold1348 GLEAN mRNA 72757 73137 1 + . ID=CGI_10008079; scaffold1348 GLEAN promoter 73625 74624 1 + . ID=CGI_10008080; scaffold1348 GLEAN mRNA 74625 75224 1 + . ID=CGI_10008080; scaffold1348 GLEAN promoter 75946 76945 1 + . ID=CGI_10008081; scaffold1348 TRF Tandem_Repeat 75957 76014 116 + . . scaffold1348 GLEAN mRNA 76946 77356 1 + . ID=CGI_10008081; scaffold1348 GLEAN promoter 77425 78424 1 + . ID=CGI_10008082; scaffold1348 GLEAN mRNA 78425 78736 1 + . ID=CGI_10008082; scaffold1348 GLEAN promoter 79307 80306 1 + . ID=CGI_10008084; scaffold1348 GLEAN mRNA 79668 80039 1 - . ID=CGI_10008083; scaffold1348 GLEAN promoter 80040 81039 1 - . ID=CGI_10008083; scaffold1348 GLEAN mRNA 80307 80687 1 + . ID=CGI_10008084; scaffold1348 GLEAN promoter 81165 82164 1 + . ID=CGI_10008085; scaffold1348 GLEAN mRNA 82165 82767 1 + . ID=CGI_10008085; scaffold1348 GLEAN promoter 83490 84489 0.809844 + . ID=CGI_10008086; scaffold1348 TRF Tandem_Repeat 83503 83568 114 + . . scaffold1348 GLEAN mRNA 84490 85965 0.809844 + . ID=CGI_10008086; scaffold1348 GLEAN promoter 86042 87041 1 + . ID=CGI_10008087; scaffold1348 TRF Tandem_Repeat 86607 86668 65 + . . scaffold1348 GLEAN mRNA 87042 87353 1 + . ID=CGI_10008087; scaffold1348 TRF Tandem_Repeat 137652 137695 88 + . . scaffold1348 GLEAN mRNA 139350 153215 0.546281 - . ID=CGI_10008088; scaffold1348 GLEAN promoter 153216 154215 0.546281 - . ID=CGI_10008088; scaffold1348 GLEAN promoter 153832 154831 1 + . ID=CGI_10008089; scaffold1348 GLEAN mRNA 154832 156908 1 + . ID=CGI_10008089; scaffold1348 GLEAN promoter 156946 157945 0.999372 + . ID=CGI_10008090; scaffold1348 GLEAN mRNA 157946 159304 0.999372 + . ID=CGI_10008090; scaffold1348 GLEAN mRNA 160077 161591 0.999375 - . ID=CGI_10008091; scaffold1348 GLEAN promoter 161293 162292 0.990412 + . ID=CGI_10008092; scaffold1348 GLEAN promoter 161592 162591 0.999375 - . ID=CGI_10008091; scaffold1348 GLEAN mRNA 162293 163738 0.990412 + . ID=CGI_10008092; scaffold1348 TRF Tandem_Repeat 165659 166128 493 + . . scaffold1348 GLEAN promoter 165846 166845 0.994745 + . ID=CGI_10008093; scaffold1348 GLEAN mRNA 166846 176972 0.994745 + . ID=CGI_10008093; scaffold1348 TRF Tandem_Repeat 169486 169572 104 + . . scaffold1348 WUBlastX LINE_L1 177378 177953 138 + . . scaffold1348 GLEAN promoter 178448 179447 0.990558 + . ID=CGI_10008094; scaffold1348 GLEAN mRNA 179448 190546 0.990558 + . ID=CGI_10008094; scaffold1348 TRF Tandem_Repeat 186927 187455 470 + . . scaffold1348 TRF Tandem_Repeat 186943 187458 543 + . . scaffold1348 GLEAN promoter 189645 190644 0.99999 + . ID=CGI_10008095; scaffold1348 GLEAN mRNA 190645 200992 0.99999 + . ID=CGI_10008095; scaffold1349 TRF Tandem_Repeat 9253 10329 922 + . . scaffold1349 TRF Tandem_Repeat 9254 10329 916 + . . scaffold1349 GLEAN promoter 38539 39538 0.990994 + . ID=CGI_10009934; scaffold1349 GLEAN mRNA 39539 41389 0.990994 + . ID=CGI_10009934; scaffold1349 GLEAN promoter 56613 57612 0.965913 + . ID=CGI_10009935; scaffold1349 GLEAN mRNA 57613 58539 0.965913 + . ID=CGI_10009935; scaffold1349 TRF Tandem_Repeat 59503 59547 90 + . . scaffold1349 TRF Tandem_Repeat 59641 59753 70 + . . scaffold1349 TRF Tandem_Repeat 60739 60899 81 + . . scaffold1349 TRF Tandem_Repeat 65000 65053 108 + . . scaffold1349 TRF Tandem_Repeat 67522 67603 58 + . . scaffold1349 TRF Tandem_Repeat 68814 68850 53 + . . scaffold1349 TRF Tandem_Repeat 72399 72436 69 + . . scaffold1349 TRF Tandem_Repeat 73639 73700 101 + . . scaffold1349 GLEAN promoter 75621 76620 0.67921 + . ID=CGI_10009936; scaffold1349 GLEAN mRNA 76621 91471 0.67921 + . ID=CGI_10009936; scaffold1349 TRF Tandem_Repeat 77014 77473 659 + . . scaffold1349 TRF Tandem_Repeat 82669 82702 68 + . . scaffold1349 GLEAN mRNA 93779 97622 0.995239 - . ID=CGI_10009937; scaffold1349 GLEAN promoter 97623 98622 0.995239 - . ID=CGI_10009937; scaffold1349 GLEAN mRNA 98417 106130 0.988431 - . ID=CGI_10009938; scaffold1349 WUBlastX LINE_L2 101255 101725 74 + . . scaffold1349 WUBlastX LINE_CR1-L2 101342 101686 96 + . . scaffold1349 GLEAN promoter 106131 107130 0.988431 - . ID=CGI_10009938; scaffold1349 GLEAN promoter 108398 109397 0.999996 + . ID=CGI_10009939; scaffold1349 GLEAN mRNA 109398 116363 0.999996 + . ID=CGI_10009939; scaffold1349 TRF Tandem_Repeat 118092 118141 61 + . . scaffold1349 GLEAN promoter 118652 119651 1 + . ID=CGI_10009940; scaffold1349 GLEAN mRNA 119652 120253 1 + . ID=CGI_10009940; scaffold1349 GLEAN promoter 128357 129356 0.331697 + . ID=CGI_10009941; scaffold1349 GLEAN mRNA 129357 131146 0.331697 + . ID=CGI_10009941; scaffold1349 TRF Tandem_Repeat 147094 147135 84 + . . scaffold1349 GLEAN mRNA 152213 163211 0.538893 - . ID=CGI_10009942; scaffold1349 TRF Tandem_Repeat 155751 155784 50 + . . scaffold1349 WUBlastX LINE_L2 156491 156592 30 - . . scaffold1349 WUBlastX LINE_L2 156744 156908 34 - . . scaffold1349 TRF Tandem_Repeat 157703 157748 92 + . . scaffold1349 GLEAN promoter 163212 164211 0.538893 - . ID=CGI_10009942; scaffold1349 TRF Tandem_Repeat 168065 168094 51 + . . scaffold1349 TRF Tandem_Repeat 175579 175845 214 + . . scaffold1349 TRF Tandem_Repeat 185070 185129 120 + . . scaffold1349 GLEAN mRNA 193256 230639 0.305208 - . ID=CGI_10009943; scaffold1349 TRF Tandem_Repeat 210563 210636 118 + . . scaffold1349 TRF Tandem_Repeat 216711 216759 98 + . . scaffold1349 TRF Tandem_Repeat 228528 228615 169 + . . scaffold1349 GLEAN promoter 230640 231639 0.305208 - . ID=CGI_10009943; scaffold1349 TRF Tandem_Repeat 230707 230763 114 + . . scaffold1349 TRF Tandem_Repeat 235209 235250 84 + . . scaffold1349 GLEAN mRNA 235764 236627 0.953789 - . ID=CGI_10009944; scaffold1349 GLEAN promoter 236628 237627 0.953789 - . ID=CGI_10009944; scaffold1350 WUBlastX LINE_L2 1939 2025 25 + . . scaffold1350 TRF Tandem_Repeat 3837 3886 57 + . . scaffold1350 TRF Tandem_Repeat 6551 6596 65 + . . scaffold1350 WUBlastX LINE_RTE-X 10729 11049 43 - . . scaffold1350 WUBlastX LINE_RTE-X 10861 11049 57 - . . scaffold1350 TRF Tandem_Repeat 15943 15987 81 + . . scaffold1350 TRF Tandem_Repeat 20652 21097 315 + . . scaffold1350 GLEAN promoter 21099 22098 0.999989 + . ID=CGI_10017288; scaffold1350 GLEAN mRNA 22099 22566 0.999989 + . ID=CGI_10017288; scaffold1350 TRF Tandem_Repeat 24654 24686 59 + . . scaffold1350 GLEAN promoter 26750 27749 0.499835 + . ID=CGI_10017289; scaffold1350 GLEAN mRNA 27750 32465 0.499835 + . ID=CGI_10017289; scaffold1350 TRF Tandem_Repeat 32700 32731 50 + . . scaffold1350 WUBlastX LTR_Gypsy 33947 34564 33 + . . scaffold1350 WUBlastX LTR_Gypsy 34118 34636 44 + . . scaffold1350 GLEAN mRNA 34597 41993 0.49982 - . ID=CGI_10017291; scaffold1350 TRF Tandem_Repeat 37817 37867 102 + . . scaffold1350 TRF Tandem_Repeat 39732 40478 715 + . . scaffold1350 GLEAN promoter 41994 42993 0.49982 - . ID=CGI_10017291; scaffold1350 GLEAN mRNA 42174 58718 0.624435 - . ID=CGI_10017292; scaffold1350 TRF Tandem_Repeat 49985 50015 62 + . . scaffold1350 TRF Tandem_Repeat 53466 54195 467 + . . scaffold1350 TRF Tandem_Repeat 53466 54195 431 + . . scaffold1350 TRF Tandem_Repeat 53474 54197 372 + . . scaffold1350 GLEAN promoter 55381 56380 0.999675 + . ID=CGI_10017293; scaffold1350 GLEAN mRNA 56381 64175 0.999675 + . ID=CGI_10017293; scaffold1350 GLEAN promoter 58719 59718 0.624435 - . ID=CGI_10017292; scaffold1350 TRF Tandem_Repeat 64324 64350 54 + . . scaffold1350 TRF Tandem_Repeat 64997 65219 293 + . . scaffold1350 GLEAN promoter 73638 74637 0.588959 + . ID=CGI_10017294; scaffold1350 GLEAN mRNA 74638 75754 0.588959 + . ID=CGI_10017294; scaffold1350 GLEAN promoter 74984 75983 0.588883 + . ID=CGI_10017295; scaffold1350 GLEAN mRNA 75984 82579 0.588883 + . ID=CGI_10017295; scaffold1350 TRF Tandem_Repeat 85692 86001 397 + . . scaffold1350 WUBlastX LINE_RTE-X 88817 89032 29 - . . scaffold1350 GLEAN mRNA 89427 90463 0.999495 - . ID=CGI_10017296; scaffold1350 GLEAN promoter 90464 91463 0.999495 - . ID=CGI_10017296; scaffold1350 GLEAN mRNA 92477 120800 0.694726 - . ID=CGI_10017297; scaffold1350 TRF Tandem_Repeat 95413 95507 190 + . . scaffold1350 WUBlastX LTR_Ngaro 109607 109831 81 - . . scaffold1350 WUBlastX LTR_Ngaro 109950 110333 22 - . . scaffold1350 WUBlastX LTR_Ngaro 110016 110396 45 - . . scaffold1350 GLEAN promoter 115715 116714 0.68864 + . ID=CGI_10017298; scaffold1350 GLEAN mRNA 116715 124816 0.68864 + . ID=CGI_10017298; scaffold1350 WUBlastX LTR_Gypsy 119245 119892 556 + . . scaffold1350 WUBlastX LTR_Gypsy 119254 120060 343 + . . scaffold1350 WUBlastX LTR_Gypsy 119829 120107 63 + . . scaffold1350 GLEAN promoter 120801 121800 0.694726 - . ID=CGI_10017297; scaffold1350 TRF Tandem_Repeat 124085 124410 426 + . . scaffold1350 TRF Tandem_Repeat 124304 124566 156 + . . scaffold1350 WUBlastX LINE_RTE-X 128665 128847 62 - . . scaffold1350 WUBlastX LINE_RTE-X 128671 128913 46 - . . scaffold1350 GLEAN mRNA 129252 139027 0.648527 - . ID=CGI_10017299; scaffold1350 TRF Tandem_Repeat 136861 136896 63 + . . scaffold1350 GLEAN promoter 139028 140027 0.648527 - . ID=CGI_10017299; scaffold1350 GLEAN mRNA 148503 161084 1 - . ID=CGI_10017301; scaffold1350 WUBlastX LINE_L1-Tx1 149035 149661 23 + . . scaffold1350 GLEAN promoter 161085 162084 1 - . ID=CGI_10017301; scaffold1350 TRF Tandem_Repeat 163903 163947 90 + . . scaffold1350 TRF Tandem_Repeat 164381 164411 62 + . . scaffold1350 GLEAN mRNA 175145 193937 0.999592 - . ID=CGI_10017302; scaffold1350 WUBlastX LINE_L2 176587 177132 93 + . . scaffold1350 WUBlastX LINE_L1-Tx1 177453 181244 1877 + . . scaffold1350 TRF Tandem_Repeat 185813 185939 132 + . . scaffold1350 TRF Tandem_Repeat 185819 185926 125 + . . scaffold1350 TRF Tandem_Repeat 185824 185939 133 + . . scaffold1350 GLEAN promoter 193938 194937 0.999592 - . ID=CGI_10017302; scaffold1350 GLEAN mRNA 196123 199789 0.999999 - . ID=CGI_10017303; scaffold1350 GLEAN promoter 199790 200789 0.999999 - . ID=CGI_10017303; scaffold1350 GLEAN mRNA 200904 214641 0.523236 - . ID=CGI_10017304; scaffold1350 WUBlastX LTR_Ngaro 203271 203672 170 - . . scaffold1350 WUBlastX LINE_L1 207526 207780 65 - . . scaffold1350 GLEAN promoter 214642 215641 0.523236 - . ID=CGI_10017304; scaffold1350 WUBlastX LINE_L2 220703 221389 101 + . . scaffold1350 WUBlastX LINE_L1-Tx1 221749 222324 365 + . . scaffold1350 WUBlastX LTR_Ngaro 222882 223370 298 - . . scaffold1350 WUBlastX LTR_Ngaro 222882 223574 293 - . . scaffold1350 WUBlastX LTR_Ngaro 223558 224247 142 - . . scaffold1350 WUBlastX LINE_L1 224957 225781 88 + . . scaffold1350 WUBlastX LINE_L1-Tx1 225149 226186 307 + . . scaffold1350 WUBlastX LINE_L1-Tx1 226266 226862 45 + . . scaffold1350 WUBlastX LINE_L1-Tx1 226389 226865 101 + . . scaffold1350 GLEAN mRNA 234925 240808 0.490222 - . ID=CGI_10017305; scaffold1350 GLEAN promoter 240809 241808 0.490222 - . ID=CGI_10017305; scaffold1350 TRF Tandem_Repeat 241933 242027 190 + . . scaffold1350 TRF Tandem_Repeat 242512 242560 98 + . . scaffold1350 WUBlastX LINE_I 245017 245121 25 - . . scaffold1350 WUBlastX LINE_RTE-X 245290 246633 399 - . . scaffold1350 WUBlastX LINE_RTE-X 255721 257421 116 - . . scaffold1350 WUBlastX LINE_RTE-X 255994 257421 132 - . . scaffold1350 WUBlastX LINE_RTE-X 256258 257418 343 - . . scaffold1350 WUBlastX LINE_CR1 256963 257529 76 - . . scaffold1350 GLEAN promoter 258568 259567 0.949387 + . ID=CGI_10017306; scaffold1350 GLEAN mRNA 259568 261727 0.949387 + . ID=CGI_10017306; scaffold1350 GLEAN mRNA 263572 266107 1 - . ID=CGI_10017307; scaffold1350 GLEAN promoter 266108 267107 1 - . ID=CGI_10017307; scaffold1350 GLEAN promoter 266566 267565 0.952681 + . ID=CGI_10017308; scaffold1350 GLEAN mRNA 267566 273446 0.952681 + . ID=CGI_10017308; scaffold1350 TRF Tandem_Repeat 278054 278113 56 + . . scaffold1350 GLEAN promoter 286668 287667 1 + . ID=CGI_10017309; scaffold1350 GLEAN mRNA 287668 297786 1 + . ID=CGI_10017309; scaffold1350 TRF Tandem_Repeat 289224 289406 142 + . . scaffold1350 TRF Tandem_Repeat 300547 301633 1309 + . . scaffold1350 TRF Tandem_Repeat 302539 302676 56 + . . scaffold1350 GLEAN promoter 304453 305452 0.78166 + . ID=CGI_10017310; scaffold1350 GLEAN mRNA 305453 312696 0.78166 + . ID=CGI_10017310; scaffold1350 GLEAN mRNA 314454 321270 1 - . ID=CGI_10017311; scaffold1350 GLEAN promoter 321271 322270 1 - . ID=CGI_10017311; scaffold1350 GLEAN promoter 326392 327391 0.78166 + . ID=CGI_10017312; scaffold1350 GLEAN mRNA 327392 328172 0.78166 + . ID=CGI_10017312; scaffold1350 TRF Tandem_Repeat 336527 336551 50 + . . scaffold1350 GLEAN mRNA 336636 336899 0.999372 - . ID=CGI_10017313; scaffold1350 GLEAN promoter 336900 337899 0.999372 - . ID=CGI_10017313; scaffold1350 TRF Tandem_Repeat 338824 338865 68 + . . scaffold1350 TRF Tandem_Repeat 339657 339694 76 + . . scaffold1350 TRF Tandem_Repeat 340097 340127 62 + . . scaffold1350 TRF Tandem_Repeat 341666 341715 100 + . . scaffold1350 TRF Tandem_Repeat 341805 341858 108 + . . scaffold1350 GLEAN promoter 342515 343514 1 + . ID=CGI_10017314; scaffold1350 GLEAN mRNA 343515 350224 1 + . ID=CGI_10017314; scaffold1350 TRF Tandem_Repeat 347272 347554 348 + . . scaffold1350 TRF Tandem_Repeat 347283 347593 264 + . . scaffold1350 TRF Tandem_Repeat 347756 347989 423 + . . scaffold1350 TRF Tandem_Repeat 347761 347978 223 + . . scaffold1350 TRF Tandem_Repeat 349382 349435 108 + . . scaffold1350 TRF Tandem_Repeat 350542 351062 727 + . . scaffold1350 TRF Tandem_Repeat 350544 351096 802 + . . scaffold1350 TRF Tandem_Repeat 351358 351734 560 + . . scaffold1350 TRF Tandem_Repeat 368370 368520 143 + . . scaffold1350 TRF Tandem_Repeat 368406 368508 71 + . . scaffold1350 TRF Tandem_Repeat 370896 371038 128 + . . scaffold1350 TRF Tandem_Repeat 371960 372094 118 + . . scaffold1350 TRF Tandem_Repeat 374018 374078 113 + . . scaffold1350 GLEAN promoter 376685 377684 1 + . ID=CGI_10017315; scaffold1350 TRF Tandem_Repeat 377186 377404 375 + . . scaffold1350 TRF Tandem_Repeat 377585 377621 74 + . . scaffold1350 GLEAN mRNA 377685 378882 1 + . ID=CGI_10017315; scaffold1350 TRF Tandem_Repeat 383143 383184 54 + . . scaffold1350 TRF Tandem_Repeat 384117 384208 96 + . . scaffold1350 TRF Tandem_Repeat 384117 384210 54 + . . scaffold1350 GLEAN promoter 384237 385236 1 + . ID=CGI_10017316; scaffold1350 TRF Tandem_Repeat 385023 385048 52 + . . scaffold1350 GLEAN mRNA 385237 393326 1 + . ID=CGI_10017316; scaffold1350 TRF Tandem_Repeat 385612 385671 106 + . . scaffold1350 TRF Tandem_Repeat 391739 391823 161 + . . scaffold1350 TRF Tandem_Repeat 392046 392081 72 + . . scaffold1350 GLEAN promoter 392414 393413 0.728523 + . ID=CGI_10017317; scaffold1350 GLEAN mRNA 393414 411683 0.728523 + . ID=CGI_10017317; scaffold1350 TRF Tandem_Repeat 395210 395252 52 + . . scaffold1350 TRF Tandem_Repeat 395367 395401 70 + . . scaffold1350 WUBlastX LINE_RTE-X 396908 397780 125 - . . scaffold1350 WUBlastX LINE_RTE-X 397022 397750 188 - . . scaffold1350 WUBlastX LINE_RTE-X 397661 397804 41 - . . scaffold1350 WUBlastX LINE_RTE-BovB 397821 397940 53 - . . scaffold1350 WUBlastX LINE_RTE-X 397927 398334 157 - . . scaffold1350 WUBlastX LINE_RTE-X 398346 398513 81 - . . scaffold1350 WUBlastX LINE_CR1 398385 398564 37 - . . scaffold1350 WUBlastX LINE_RTE-X 398590 398688 26 - . . scaffold1350 WUBlastX LINE_RTE-X 398590 398775 20 - . . scaffold1350 WUBlastX LINE_L1-Tx1 399909 400019 55 - . . scaffold1350 WUBlastX LINE_L1-Tx1 400121 400549 20 - . . scaffold1350 TRF Tandem_Repeat 400863 401842 1265 + . . scaffold1350 TRF Tandem_Repeat 407339 408471 1200 + . . scaffold1350 TRF Tandem_Repeat 407339 408471 376 + . . scaffold1350 TRF Tandem_Repeat 407339 408471 1167 + . . scaffold1350 TRF Tandem_Repeat 410389 410691 597 + . . scaffold1350 TRF Tandem_Repeat 412529 413332 1182 + . . scaffold1350 TRF Tandem_Repeat 418457 418494 51 + . . scaffold1350 GLEAN promoter 421157 422156 0.930348 + . ID=CGI_10017318; scaffold1350 GLEAN mRNA 422157 430316 0.930348 + . ID=CGI_10017318; scaffold1350 TRF Tandem_Repeat 425624 425666 68 + . . scaffold1350 TRF Tandem_Repeat 427245 430234 2182 + . . scaffold1350 TRF Tandem_Repeat 431372 431425 72 + . . scaffold1350 TRF Tandem_Repeat 432868 432902 70 + . . scaffold1350 WUBlastX DNA_Kolobok 438857 439354 48 + . . scaffold1350 TRF Tandem_Repeat 446173 446431 405 + . . scaffold1350 WUBlastX LINE_RTE-X 447371 447649 48 + . . scaffold1350 GLEAN mRNA 448816 473345 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX LTR_Pao 451165 451542 74 + . . scaffold1350 WUBlastX LTR_Pao 451563 455030 2276 + . . scaffold1350 WUBlastX LTR_Pao 452136 456443 2853 + . . scaffold1350 TRF Tandem_Repeat 459717 460511 1527 + . . scaffold1350 WUBlastX LTR_DIRS 468048 468842 114 + . . scaffold1350 WUBlastX LTR_DIRS 468883 469509 252 + . . scaffold1350 WUBlastX LTR_DIRS 469018 469560 356 + . . scaffold1350 WUBlastX LTR_DIRS 469511 469639 87 + . . scaffold1350 WUBlastX LTR_DIRS 470092 471486 746 + . . scaffold1350 WUBlastX LTR_DIRS 471327 472238 520 + . . scaffold1350 GLEAN promoter 473346 474345 0.450856 - . ID=CGI_10017319; scaffold1350 WUBlastX DNA_TcMar-Tc1 481982 482365 96 - . . scaffold1350 WUBlastX DNA_TcMar-Tc1 482015 482329 164 - . . scaffold1350 WUBlastX LINE_RTE-X 490571 491749 510 - . . scaffold1350 WUBlastX LINE_RTE-X 491763 492641 420 - . . scaffold1350 WUBlastX LINE_L2 493115 493282 24 - . . scaffold1350 WUBlastX LINE_RTE-X 494861 496927 450 - . . scaffold1350 WUBlastX LINE_RTE-X 495470 496909 622 - . . scaffold1350 WUBlastX LINE_L2 495710 497149 228 - . . scaffold1350 TRF Tandem_Repeat 497721 497758 51 + . . scaffold1351 GLEAN mRNA 900 4595 1 - . ID=CGI_10000360; scaffold1351 GLEAN promoter 4596 4683 1 - . ID=CGI_10000360; scaffold1352 GLEAN mRNA 710 1564 0.999451 - . ID=CGI_10018405; scaffold1352 GLEAN promoter 1565 2564 0.999451 - . ID=CGI_10018405; scaffold1352 TRF Tandem_Repeat 1800 1863 114 + . . scaffold1352 WUBlastX LINE_L1 5762 5953 20 + . . scaffold1352 WUBlastX LINE_L1-Tx1 5807 6265 58 + . . scaffold1352 WUBlastX LINE_L1-Tx1 6297 6683 58 + . . scaffold1352 WUBlastX LINE_L1-Tx1 6417 6704 76 + . . scaffold1352 WUBlastX LINE_L1-Tx1 6650 6973 57 + . . scaffold1352 TRF Tandem_Repeat 7532 7795 213 + . . scaffold1352 WUBlastX LINE_CR1-L2 13130 13552 51 + . . scaffold1352 WUBlastX LINE_L2 13334 13624 55 + . . scaffold1352 WUBlastX LINE_CR1-L2 13370 13552 95 + . . scaffold1352 WUBlastX LINE_CR1-L2 13756 13989 26 + . . scaffold1352 WUBlastX LINE_L2 13771 14067 22 + . . scaffold1352 WUBlastX LTR_DIRS 20099 20239 46 + . . scaffold1352 WUBlastX LTR_DIRS 20292 21914 606 + . . scaffold1352 WUBlastX LTR_Gypsy 22299 22346 22 + . . scaffold1352 GLEAN mRNA 24554 24757 0.618163 - . ID=CGI_10018406; scaffold1352 GLEAN promoter 24625 25624 0.999661 + . ID=CGI_10018407; scaffold1352 GLEAN promoter 24758 25757 0.618163 - . ID=CGI_10018406; scaffold1352 TRF Tandem_Repeat 25471 25514 88 + . . scaffold1352 GLEAN mRNA 25625 27367 0.999661 + . ID=CGI_10018407; scaffold1352 TRF Tandem_Repeat 31451 31517 89 + . . scaffold1352 WUBlastX LINE_CR1 35907 36170 54 + . . scaffold1352 WUBlastX LINE_CR1-L2 35949 36269 131 + . . scaffold1352 WUBlastX LINE_CR1-L2 35949 36419 95 + . . scaffold1352 WUBlastX LINE_CR1-L2 35949 36200 132 + . . scaffold1352 TRF Tandem_Repeat 40997 41103 142 + . . scaffold1352 TRF Tandem_Repeat 42624 42735 161 + . . scaffold1352 TRF Tandem_Repeat 45076 45128 63 + . . scaffold1352 TRF Tandem_Repeat 48569 48618 75 + . . scaffold1352 TRF Tandem_Repeat 49000 49039 80 + . . scaffold1352 GLEAN mRNA 51284 55265 0.997083 - . ID=CGI_10018408; scaffold1352 TRF Tandem_Repeat 51896 51952 114 + . . scaffold1352 GLEAN promoter 55266 56265 0.997083 - . ID=CGI_10018408; scaffold1352 TRF Tandem_Repeat 55764 55799 54 + . . scaffold1352 TRF Tandem_Repeat 55764 55811 69 + . . scaffold1352 GLEAN mRNA 56490 57295 0.980152 - . ID=CGI_10018409; scaffold1352 GLEAN promoter 57296 58295 0.980152 - . ID=CGI_10018409; scaffold1352 WUBlastX LINE_CR1-L2 68494 68622 21 + . . scaffold1352 WUBlastX LINE_L2 68566 68619 24 + . . scaffold1352 WUBlastX LINE_L2 68575 68619 25 + . . scaffold1352 WUBlastX LINE_CR1-L2 68628 68876 74 + . . scaffold1352 WUBlastX LINE_CR1-L2 68637 69254 71 + . . scaffold1352 TRF Tandem_Repeat 84222 84398 219 + . . scaffold1352 WUBlastX LTR_Gypsy 84958 85335 54 + . . scaffold1352 WUBlastX LTR_Gypsy 85069 85290 71 + . . scaffold1352 WUBlastX LTR_Gypsy 85108 85341 100 + . . scaffold1352 WUBlastX LTR_Gypsy 85277 85690 80 + . . scaffold1352 WUBlastX LTR_Gypsy-Cigr 85277 85570 131 + . . scaffold1352 WUBlastX LTR_Gypsy 85705 85758 25 + . . scaffold1352 TRF Tandem_Repeat 99955 100015 122 + . . scaffold1352 TRF Tandem_Repeat 100013 100079 125 + . . scaffold1352 TRF Tandem_Repeat 101183 101331 163 + . . scaffold1352 GLEAN promoter 101227 102226 0.999451 + . ID=CGI_10018411; scaffold1352 GLEAN mRNA 102227 102547 0.999451 + . ID=CGI_10018411; scaffold1352 TRF Tandem_Repeat 110059 110108 66 + . . scaffold1352 TRF Tandem_Repeat 112472 113641 1611 + . . scaffold1352 TRF Tandem_Repeat 114654 114753 74 + . . scaffold1352 TRF Tandem_Repeat 114656 114714 82 + . . scaffold1352 TRF Tandem_Repeat 114662 114753 85 + . . scaffold1352 TRF Tandem_Repeat 114700 114753 90 + . . scaffold1352 WUBlastX DNA_TcMar-Tc1 115274 116233 407 - . . scaffold1352 TRF Tandem_Repeat 122730 122980 195 + . . scaffold1352 TRF Tandem_Repeat 122730 123022 145 + . . scaffold1352 TRF Tandem_Repeat 122734 123022 225 + . . scaffold1352 TRF Tandem_Repeat 128640 128675 72 + . . scaffold1352 WUBlastX LINE_L1 136433 136909 21 + . . scaffold1352 WUBlastX LINE_L1 136454 136846 36 + . . scaffold1352 WUBlastX LINE_L1-Tx1 136670 136855 57 + . . scaffold1352 TRF Tandem_Repeat 142881 142933 72 + . . scaffold1352 WUBlastX LTR_Gypsy 144548 145195 184 - . . scaffold1352 WUBlastX LTR_Gypsy 144722 146032 1014 - . . scaffold1352 WUBlastX LTR_Gypsy 145181 146194 464 - . . scaffold1352 WUBlastX LTR_Gypsy 146121 146336 125 - . . scaffold1352 WUBlastX LTR_Gypsy 146332 146673 256 - . . scaffold1352 WUBlastX LTR_Gypsy 146350 146820 87 - . . scaffold1352 WUBlastX LTR_Gypsy 147184 147255 20 - . . scaffold1352 WUBlastX LINE_CR1-L2 147956 148318 109 + . . scaffold1352 TRF Tandem_Repeat 148331 148471 113 + . . scaffold1352 TRF Tandem_Repeat 149463 149596 128 + . . scaffold1352 WUBlastX LTR_Gypsy 150313 150870 139 - . . scaffold1352 WUBlastX LTR_Gypsy 150397 150861 395 - . . scaffold1352 TRF Tandem_Repeat 150884 150950 80 + . . scaffold1352 TRF Tandem_Repeat 153652 153714 99 + . . scaffold1352 TRF Tandem_Repeat 153906 153930 50 + . . scaffold1352 TRF Tandem_Repeat 153928 153993 123 + . . scaffold1352 TRF Tandem_Repeat 154488 154554 71 + . . scaffold1352 WUBlastX LTR_Gypsy 154567 155097 117 - . . scaffold1352 WUBlastX LTR_Gypsy 154576 154851 143 - . . scaffold1352 WUBlastX LTR_Gypsy 154576 154956 124 - . . scaffold1352 WUBlastX LTR_Gypsy 155087 156289 192 - . . scaffold1352 WUBlastX LTR_Gypsy 155339 156208 217 - . . scaffold1352 TRF Tandem_Repeat 159158 159241 152 + . . scaffold1352 TRF Tandem_Repeat 163651 163696 74 + . . scaffold1352 GLEAN mRNA 168784 185855 0.640433 - . ID=CGI_10018412; scaffold1352 TRF Tandem_Repeat 169453 169504 104 + . . scaffold1352 WUBlastX DNA_TcMar-Tc1 172261 173013 153 - . . scaffold1352 WUBlastX DNA_TcMar-Tc1 172861 173193 49 - . . scaffold1352 TRF Tandem_Repeat 175390 175421 55 + . . scaffold1352 TRF Tandem_Repeat 177098 177182 53 + . . scaffold1352 TRF Tandem_Repeat 177203 177282 54 + . . scaffold1352 TRF Tandem_Repeat 177970 178012 86 + . . scaffold1352 TRF Tandem_Repeat 178122 178160 78 + . . scaffold1352 TRF Tandem_Repeat 183767 183833 80 + . . scaffold1352 TRF Tandem_Repeat 185381 185447 82 + . . scaffold1352 GLEAN promoter 185856 186855 0.640433 - . ID=CGI_10018412; scaffold1352 WUBlastX DNA_TcMar-Tc1 189854 190036 46 + . . scaffold1352 WUBlastX DNA_TcMar-Tc1 189919 190194 48 + . . scaffold1352 WUBlastX DNA_TcMar-Tc1 189970 190179 72 + . . scaffold1352 WUBlastX DNA_TcMar-Tc1 190012 190206 85 + . . scaffold1352 TRF Tandem_Repeat 191653 191703 66 + . . scaffold1352 WUBlastX LTR_Gypsy 193824 194549 370 + . . scaffold1352 WUBlastX LTR_Gypsy 193833 195260 302 + . . scaffold1352 WUBlastX LTR_Gypsy 193938 194693 396 + . . scaffold1352 WUBlastX LTR_Foamy 194736 195365 159 + . . scaffold1352 WUBlastX LTR_Gypsy 195287 195646 68 + . . scaffold1352 WUBlastX LTR_Gypsy 195293 195721 32 + . . scaffold1352 TRF Tandem_Repeat 196561 196605 90 + . . scaffold1352 TRF Tandem_Repeat 197329 197407 158 + . . scaffold1352 TRF Tandem_Repeat 201382 201435 56 + . . scaffold1352 GLEAN mRNA 212932 230879 0.392918 - . ID=CGI_10018413; scaffold1352 WUBlastX LINE_L1 217162 217428 91 - . . scaffold1352 WUBlastX LINE_L1 217165 217584 52 - . . scaffold1352 WUBlastX LINE_L1-Tx1 217174 217395 133 - . . scaffold1352 TRF Tandem_Repeat 221577 221606 51 + . . scaffold1352 GLEAN promoter 222334 223333 1 + . ID=CGI_10018414; scaffold1352 GLEAN mRNA 223334 223534 1 + . ID=CGI_10018414; scaffold1352 GLEAN promoter 224048 225047 0.728758 + . ID=CGI_10018415; scaffold1352 GLEAN mRNA 225048 231379 0.728758 + . ID=CGI_10018415; scaffold1352 GLEAN promoter 230880 231879 0.392918 - . ID=CGI_10018413; scaffold1352 GLEAN mRNA 232915 245768 0.998601 - . ID=CGI_10018416; scaffold1352 TRF Tandem_Repeat 237646 237678 66 + . . scaffold1352 GLEAN promoter 242840 243839 0.989551 + . ID=CGI_10018417; scaffold1352 GLEAN mRNA 243840 244574 0.989551 + . ID=CGI_10018417; scaffold1352 GLEAN promoter 244294 245293 1 + . ID=CGI_10018418; scaffold1352 TRF Tandem_Repeat 244666 244699 50 + . . scaffold1352 GLEAN mRNA 245294 249799 1 + . ID=CGI_10018418; scaffold1352 GLEAN promoter 245769 246768 0.998601 - . ID=CGI_10018416; scaffold1352 TRF Tandem_Repeat 249998 250036 60 + . . scaffold1352 GLEAN mRNA 257906 263696 0.232061 - . ID=CGI_10018419; scaffold1352 GLEAN promoter 263697 264696 0.232061 - . ID=CGI_10018419; scaffold1352 GLEAN promoter 265011 266010 0.813833 + . ID=CGI_10018420; scaffold1352 GLEAN mRNA 266011 273275 0.813833 + . ID=CGI_10018420; scaffold1352 GLEAN promoter 278942 279941 1 + . ID=CGI_10018421; scaffold1352 GLEAN mRNA 279942 287031 1 + . ID=CGI_10018421; scaffold1352 TRF Tandem_Repeat 288529 288610 134 + . . scaffold1352 GLEAN mRNA 292591 292761 0.742327 - . ID=CGI_10018422; scaffold1352 GLEAN promoter 292762 293761 0.742327 - . ID=CGI_10018422; scaffold1352 GLEAN promoter 299291 300290 0.838486 + . ID=CGI_10018423; scaffold1352 GLEAN mRNA 300291 302479 0.838486 + . ID=CGI_10018423; scaffold1352 TRF Tandem_Repeat 300405 300613 102 + . . scaffold1352 GLEAN promoter 319238 320237 0.927469 + . ID=CGI_10018424; scaffold1352 GLEAN mRNA 320238 321692 0.927469 + . ID=CGI_10018424; scaffold1352 TRF Tandem_Repeat 332852 332892 82 + . . scaffold1352 WUBlastX LINE_L1 333934 334632 278 - . . scaffold1352 WUBlastX LINE_L1-Tx1 334045 334632 347 - . . scaffold1352 WUBlastX LINE_L1 334601 335251 99 - . . scaffold1352 WUBlastX LINE_L1 334604 335140 212 - . . scaffold1352 WUBlastX LINE_L1 335185 335442 76 - . . scaffold1352 WUBlastX LINE_L1 335185 335373 84 - . . scaffold1352 TRF Tandem_Repeat 344267 344337 142 + . . scaffold1352 TRF Tandem_Repeat 364025 364065 73 + . . scaffold1352 TRF Tandem_Repeat 366657 366773 141 + . . scaffold1352 GLEAN promoter 399458 400457 0.333165 + . ID=CGI_10018425; scaffold1352 GLEAN mRNA 400458 408667 0.333165 + . ID=CGI_10018425; scaffold1352 TRF Tandem_Repeat 400730 400771 68 + . . scaffold1352 WUBlastX LINE_L1-Tx1 401494 401817 48 + . . scaffold1352 WUBlastX LINE_L2 401497 401757 75 + . . scaffold1352 WUBlastX LINE_RTE-X 401986 402366 154 + . . scaffold1352 WUBlastX LINE_RTE-X 402007 402435 85 + . . scaffold1352 WUBlastX LINE_RTE-X 402330 402494 49 + . . scaffold1352 WUBlastX LINE_RTE-X 402384 402626 23 + . . scaffold1352 WUBlastX LINE_RTE-X 402393 402536 41 + . . scaffold1352 WUBlastX LINE_RTE 402972 403022 24 + . . scaffold1352 WUBlastX LINE_RTE-X 402990 403373 29 + . . scaffold1352 WUBlastX LINE_RTE-X 403072 403155 38 + . . scaffold1352 WUBlastX LINE_RTE-X 403200 403373 45 + . . scaffold1352 WUBlastX LINE_RTE-X 403387 404196 165 + . . scaffold1352 WUBlastX LINE_RTE-X 403722 405050 37 + . . scaffold1352 WUBlastX LINE_RTE-X 404175 404543 114 + . . scaffold1352 GLEAN mRNA 409430 412340 1 - . ID=CGI_10018426; scaffold1352 GLEAN promoter 412341 413340 1 - . ID=CGI_10018426; scaffold1352 TRF Tandem_Repeat 419707 419747 64 + . . scaffold1352 TRF Tandem_Repeat 420261 420335 150 + . . scaffold1352 TRF Tandem_Repeat 420333 420372 80 + . . scaffold1352 TRF Tandem_Repeat 423506 423559 99 + . . scaffold1352 WUBlastX DNA_TcMar-Marin 427033 427191 47 + . . scaffold1352 WUBlastX DNA_TcMar-Marin 427051 427251 31 + . . scaffold1352 WUBlastX DNA_TcMar-Marin 427367 427753 45 + . . scaffold1352 WUBlastX DNA_TcMar-Marin 427439 427753 93 + . . scaffold1352 WUBlastX DNA_TcMar-Marin 427678 427932 22 + . . scaffold1352 GLEAN mRNA 428049 429253 0.831973 - . ID=CGI_10018427; scaffold1352 GLEAN promoter 429254 430253 0.831973 - . ID=CGI_10018427; scaffold1352 GLEAN mRNA 434092 436067 0.999676 - . ID=CGI_10018428; scaffold1352 GLEAN promoter 436068 437067 0.999676 - . ID=CGI_10018428; scaffold1352 WUBlastX DNA_TcMar-Marin 443667 443816 34 + . . scaffold1352 WUBlastX DNA_TcMar-Marin 444180 444239 26 + . . scaffold1352 GLEAN promoter 445585 446584 0.306187 + . ID=CGI_10018429; scaffold1352 GLEAN mRNA 446585 459041 0.306187 + . ID=CGI_10018429; scaffold1352 TRF Tandem_Repeat 453033 453086 81 + . . scaffold1352 GLEAN promoter 461103 462102 0.728224 + . ID=CGI_10018430; scaffold1352 GLEAN mRNA 462103 466469 0.728224 + . ID=CGI_10018430; scaffold1352 TRF Tandem_Repeat 471985 472081 88 + . . scaffold1352 TRF Tandem_Repeat 472167 472316 61 + . . scaffold1352 TRF Tandem_Repeat 472992 473101 87 + . . scaffold1352 GLEAN mRNA 473395 505370 0.647789 - . ID=CGI_10018431; scaffold1352 TRF Tandem_Repeat 495643 495673 62 + . . scaffold1352 GLEAN promoter 505371 506370 0.647789 - . ID=CGI_10018431; scaffold1352 TRF Tandem_Repeat 545771 545900 233 + . . scaffold1352 WUBlastX LINE_Penelope 551359 551742 46 + . . scaffold1353 TRF Tandem_Repeat 4993 5019 54 + . . scaffold1353 TRF Tandem_Repeat 13760 13796 74 + . . scaffold1353 WUBlastX LINE_L1-Tx1 13890 14177 67 + . . scaffold1353 WUBlastX LINE_L1 17718 17966 65 + . . scaffold1353 WUBlastX LINE_L1 17885 18244 98 + . . scaffold1353 WUBlastX LINE_L1-Tx1 17954 18358 83 + . . scaffold1353 WUBlastX LINE_L1 17984 18250 129 + . . scaffold1353 WUBlastX LINE_RTE-X 18911 19204 28 + . . scaffold1353 WUBlastX LINE_RTE-X 19174 19236 23 + . . scaffold1353 WUBlastX LINE_RTE-X 19357 19617 27 + . . scaffold1353 WUBlastX LINE_RTE-X 19438 19617 29 + . . scaffold1353 WUBlastX LINE_I 19946 20047 29 + . . scaffold1353 WUBlastX LINE_RTE-X 19983 21266 230 + . . scaffold1353 WUBlastX LINE_RTE-X 20148 21209 416 + . . scaffold1353 WUBlastX LINE_RTE-X 21262 21675 181 + . . scaffold1353 WUBlastX LINE_RTE-X 21765 22076 87 + . . scaffold1353 WUBlastX LINE_RTE-X 21777 22241 74 + . . scaffold1353 TRF Tandem_Repeat 22704 22745 66 + . . scaffold1353 TRF Tandem_Repeat 22774 22818 65 + . . scaffold1353 TRF Tandem_Repeat 24761 24791 62 + . . scaffold1353 TRF Tandem_Repeat 24791 24835 90 + . . scaffold1353 GLEAN mRNA 25142 31467 0.99874 - . ID=CGI_10003639; scaffold1353 TRF Tandem_Repeat 26984 27016 66 + . . scaffold1353 TRF Tandem_Repeat 27016 27071 112 + . . scaffold1353 GLEAN promoter 31468 32467 0.99874 - . ID=CGI_10003639; scaffold1353 TRF Tandem_Repeat 38780 38843 119 + . . scaffold1353 WUBlastX LINE_CR1 43760 44434 52 - . . scaffold1353 WUBlastX LINE_L2 43991 44428 95 - . . scaffold1353 WUBlastX LINE_RTE-X 44075 44437 253 - . . scaffold1353 WUBlastX LINE_I 44804 44980 29 - . . scaffold1353 TRF Tandem_Repeat 48212 48278 109 + . . scaffold1353 TRF Tandem_Repeat 56204 56237 50 + . . scaffold1353 WUBlastX DNA_IS4EU 70491 70784 100 - . . scaffold1353 WUBlastX DNA_IS4EU 71003 71134 37 - . . scaffold1353 TRF Tandem_Repeat 72403 72439 65 + . . scaffold1353 WUBlastX LTR_Gypsy 78041 78463 31 + . . scaffold1353 WUBlastX LTR_Gypsy 78107 78460 70 + . . scaffold1353 WUBlastX LTR_Gypsy-Cigr 78881 79429 32 + . . scaffold1353 WUBlastX LTR_Gypsy 79016 79393 73 + . . scaffold1353 WUBlastX LTR_Gypsy 79145 79429 86 + . . scaffold1354 GLEAN mRNA 391 849 1 - . ID=CGI_10014926; scaffold1354 GLEAN promoter 850 1849 1 - . ID=CGI_10014926; scaffold1354 GLEAN mRNA 36362 42430 0.999676 - . ID=CGI_10014927; scaffold1354 GLEAN promoter 42431 43430 0.999676 - . ID=CGI_10014927; scaffold1354 WUBlastX LINE_L1 51290 51571 49 + . . scaffold1354 GLEAN mRNA 55530 71525 0.999676 - . ID=CGI_10014928; scaffold1354 GLEAN promoter 71526 72525 0.999676 - . ID=CGI_10014928; scaffold1354 TRF Tandem_Repeat 81575 81636 115 + . . scaffold1354 GLEAN mRNA 94963 112981 0.999996 - . ID=CGI_10014929; scaffold1354 TRF Tandem_Repeat 102973 103949 1305 + . . scaffold1354 TRF Tandem_Repeat 104153 104775 799 + . . scaffold1354 TRF Tandem_Repeat 105300 105670 425 + . . scaffold1354 TRF Tandem_Repeat 108059 108175 189 + . . scaffold1354 TRF Tandem_Repeat 108204 108413 251 + . . scaffold1354 TRF Tandem_Repeat 110273 110605 386 + . . scaffold1354 TRF Tandem_Repeat 111115 111432 573 + . . scaffold1354 GLEAN promoter 112982 113981 0.999996 - . ID=CGI_10014929; scaffold1354 GLEAN promoter 115912 116911 0.801523 + . ID=CGI_10014930; scaffold1354 GLEAN mRNA 116912 128449 0.801523 + . ID=CGI_10014930; scaffold1354 TRF Tandem_Repeat 117496 117530 54 + . . scaffold1354 TRF Tandem_Repeat 123395 123911 529 + . . scaffold1354 TRF Tandem_Repeat 125483 126158 304 + . . scaffold1354 TRF Tandem_Repeat 125483 125887 222 + . . scaffold1354 TRF Tandem_Repeat 125800 126122 448 + . . scaffold1354 GLEAN mRNA 132546 135698 0.929252 - . ID=CGI_10014931; scaffold1354 TRF Tandem_Repeat 134127 134245 130 + . . scaffold1354 GLEAN promoter 135699 136698 0.929252 - . ID=CGI_10014931; scaffold1354 GLEAN mRNA 144609 151091 0.453594 - . ID=CGI_10014932; scaffold1354 TRF Tandem_Repeat 146571 146604 50 + . . scaffold1354 GLEAN promoter 151092 152091 0.453594 - . ID=CGI_10014932; scaffold1354 GLEAN mRNA 152591 158772 0.503684 - . ID=CGI_10014933; scaffold1354 GLEAN promoter 158773 159772 0.503684 - . ID=CGI_10014933; scaffold1354 TRF Tandem_Repeat 160321 160360 71 + . . scaffold1354 TRF Tandem_Repeat 164808 164834 54 + . . scaffold1354 WUBlastX LINE_RTE-X 167756 167944 33 - . . scaffold1354 WUBlastX LINE_RTE-X 167837 169453 425 - . . scaffold1354 WUBlastX LINE_RTE-X 168257 169453 457 - . . scaffold1354 GLEAN mRNA 170031 176711 0.9991 - . ID=CGI_10014934; scaffold1354 WUBlastX LINE_Jockey 170034 170225 24 - . . scaffold1354 WUBlastX LINE_R1 170130 170249 22 - . . scaffold1354 WUBlastX LINE_L1-Tx1 170733 170828 32 - . . scaffold1354 WUBlastX LINE_L1-Tx1 171709 174201 1162 - . . scaffold1354 WUBlastX LINE_L2 174082 174249 31 - . . scaffold1354 WUBlastX LINE_L2 174154 174267 21 - . . scaffold1354 WUBlastX LINE_DRE 174521 174682 26 - . . scaffold1354 TRF Tandem_Repeat 175812 176026 134 + . . scaffold1354 GLEAN promoter 176712 177711 0.9991 - . ID=CGI_10014934; scaffold1354 GLEAN mRNA 178667 183119 0.889923 - . ID=CGI_10014935; scaffold1354 TRF Tandem_Repeat 179822 179860 78 + . . scaffold1354 GLEAN promoter 183120 184119 0.889923 - . ID=CGI_10014935; scaffold1354 GLEAN promoter 183170 184169 1 + . ID=CGI_10014936; scaffold1354 TRF Tandem_Repeat 183389 183687 521 + . . scaffold1354 GLEAN mRNA 184170 193090 1 + . ID=CGI_10014936; scaffold1354 TRF Tandem_Repeat 187339 188128 1119 + . . scaffold1354 TRF Tandem_Repeat 187347 188230 713 + . . scaffold1354 TRF Tandem_Repeat 187850 188006 86 + . . scaffold1354 GLEAN mRNA 194383 210294 0.943034 - . ID=CGI_10014937; scaffold1354 TRF Tandem_Repeat 203634 205069 954 + . . scaffold1354 TRF Tandem_Repeat 203634 205069 817 + . . scaffold1354 TRF Tandem_Repeat 203634 205069 1018 + . . scaffold1354 GLEAN promoter 210295 211294 0.943034 - . ID=CGI_10014937; scaffold1354 GLEAN promoter 214870 215869 0.997256 + . ID=CGI_10014938; scaffold1354 GLEAN mRNA 215870 241076 0.997256 + . ID=CGI_10014938; scaffold1354 TRF Tandem_Repeat 216075 216312 458 + . . scaffold1354 TRF Tandem_Repeat 219308 219594 448 + . . scaffold1354 TRF Tandem_Repeat 219308 219594 439 + . . scaffold1354 TRF Tandem_Repeat 230047 231132 1310 + . . scaffold1354 TRF Tandem_Repeat 238983 239222 426 + . . scaffold1354 TRF Tandem_Repeat 244018 244045 56 + . . scaffold1354 TRF Tandem_Repeat 245069 246974 3452 + . . scaffold1354 TRF Tandem_Repeat 253732 253773 59 + . . scaffold1354 TRF Tandem_Repeat 264284 264326 86 + . . scaffold1354 GLEAN mRNA 272477 277466 1 - . ID=CGI_10014939; scaffold1354 TRF Tandem_Repeat 275246 275274 58 + . . scaffold1354 TRF Tandem_Repeat 276018 277071 591 + . . scaffold1354 GLEAN promoter 277467 278466 1 - . ID=CGI_10014939; scaffold1354 TRF Tandem_Repeat 282903 283631 892 + . . scaffold1354 TRF Tandem_Repeat 283918 283969 68 + . . scaffold1354 TRF Tandem_Repeat 283918 283978 77 + . . scaffold1354 TRF Tandem_Repeat 301293 301633 367 + . . scaffold1354 TRF Tandem_Repeat 301475 301622 136 + . . scaffold1354 TRF Tandem_Repeat 304897 304972 152 + . . scaffold1354 TRF Tandem_Repeat 310488 311488 856 + . . scaffold1354 GLEAN promoter 316583 317582 1 + . ID=CGI_10014940; scaffold1354 TRF Tandem_Repeat 317236 317262 54 + . . scaffold1354 GLEAN mRNA 317583 317882 1 + . ID=CGI_10014940; scaffold1354 GLEAN mRNA 328791 332727 1 - . ID=CGI_10014941; scaffold1354 GLEAN promoter 332728 333727 1 - . ID=CGI_10014941; scaffold1354 TRF Tandem_Repeat 334702 334751 100 + . . scaffold1354 TRF Tandem_Repeat 335347 336205 700 + . . scaffold1354 GLEAN promoter 339858 340857 0.999999 + . ID=CGI_10014942; scaffold1354 GLEAN mRNA 340858 341893 0.999999 + . ID=CGI_10014942; scaffold1354 GLEAN promoter 346259 347258 0.998709 + . ID=CGI_10014943; scaffold1354 GLEAN mRNA 347259 357737 0.998709 + . ID=CGI_10014943; scaffold1354 TRF Tandem_Repeat 349429 350464 694 + . . scaffold1354 TRF Tandem_Repeat 349583 350470 711 + . . scaffold1354 TRF Tandem_Repeat 353759 353798 53 + . . scaffold1354 GLEAN promoter 360062 361061 0.99871 + . ID=CGI_10014944; scaffold1354 GLEAN mRNA 361062 362945 0.99871 + . ID=CGI_10014944; scaffold1354 TRF Tandem_Repeat 364227 364267 82 + . . scaffold1354 GLEAN promoter 366786 367785 0.32817 + . ID=CGI_10014945; scaffold1354 TRF Tandem_Repeat 367627 367673 94 + . . scaffold1354 GLEAN mRNA 367786 378141 0.32817 + . ID=CGI_10014945; scaffold1354 TRF Tandem_Repeat 370898 370944 94 + . . scaffold1354 WUBlastX DNA_Sola 383651 383905 76 + . . scaffold1354 TRF Tandem_Repeat 398254 400272 2600 + . . scaffold1355 WUBlastX LINE_RTE-X 2911 3027 27 - . . scaffold1355 WUBlastX LINE_RTE-X 3723 3830 34 - . . scaffold1355 WUBlastX LINE_RTE-X 3807 4433 83 - . . scaffold1355 WUBlastX LINE_RTE-X 3957 4358 105 - . . scaffold1355 TRF Tandem_Repeat 8150 8185 72 + . . scaffold1355 TRF Tandem_Repeat 22139 22193 92 + . . scaffold1355 TRF Tandem_Repeat 26335 26369 52 + . . scaffold1355 TRF Tandem_Repeat 31056 31122 80 + . . scaffold1355 TRF Tandem_Repeat 32814 32860 94 + . . scaffold1355 TRF Tandem_Repeat 33594 33659 60 + . . scaffold1355 TRF Tandem_Repeat 43041 43219 162 + . . scaffold1355 TRF Tandem_Repeat 43041 43219 108 + . . scaffold1355 TRF Tandem_Repeat 43041 43216 176 + . . scaffold1355 TRF Tandem_Repeat 60337 60443 97 + . . scaffold1355 TRF Tandem_Repeat 69825 69864 80 + . . scaffold1355 TRF Tandem_Repeat 80411 80442 55 + . . scaffold1355 TRF Tandem_Repeat 80442 80509 129 + . . scaffold1357 TRF Tandem_Repeat 1351 1396 92 + . . scaffold1357 TRF Tandem_Repeat 2430 2459 60 + . . scaffold1357 WUBlastX LTR_Gypsy 3741 4547 43 + . . scaffold1357 WUBlastX LTR_Gypsy 3948 4526 56 + . . scaffold1357 WUBlastX LTR_Gypsy 3978 4892 50 + . . scaffold1357 WUBlastX LTR_Gypsy-Cigr 4059 4700 172 + . . scaffold1357 WUBlastX LTR_Gypsy 4886 5449 24 + . . scaffold1357 WUBlastX LTR_Gypsy 4991 5563 60 + . . scaffold1357 WUBlastX LTR_Gypsy 5093 5746 145 + . . scaffold1357 WUBlastX LTR_Gypsy 5704 6369 246 + . . scaffold1357 WUBlastX LTR_Gypsy-Cigr 5818 7449 1211 + . . scaffold1357 GLEAN promoter 7074 8073 0.56088 + . ID=CGI_10004033; scaffold1357 GLEAN mRNA 8074 8769 0.56088 + . ID=CGI_10004033; scaffold1357 GLEAN mRNA 10414 19916 0.961258 - . ID=CGI_10004034; scaffold1357 GLEAN promoter 19917 20916 0.961258 - . ID=CGI_10004034; scaffold1357 GLEAN mRNA 22936 40562 0.729532 - . ID=CGI_10004035; scaffold1357 TRF Tandem_Repeat 36445 36639 53 + . . scaffold1357 TRF Tandem_Repeat 36445 36526 58 + . . scaffold1357 GLEAN promoter 40563 41562 0.729532 - . ID=CGI_10004035; scaffold1357 TRF Tandem_Repeat 44401 44459 118 + . . scaffold1357 GLEAN promoter 44819 45818 0.918908 + . ID=CGI_10004036; scaffold1357 GLEAN mRNA 45819 51850 0.918908 + . ID=CGI_10004036; scaffold1357 TRF Tandem_Repeat 53048 53127 160 + . . scaffold1357 GLEAN mRNA 58080 75504 0.374546 - . ID=CGI_10004037; scaffold1357 TRF Tandem_Repeat 74476 74534 118 + . . scaffold1357 GLEAN promoter 75505 76504 0.374546 - . ID=CGI_10004037; scaffold1357 GLEAN mRNA 78358 86116 0.978973 - . ID=CGI_10004038; scaffold1357 WUBlastX DNA_Maverick 79432 79560 51 - . . scaffold1357 WUBlastX DNA_Maverick 79560 80312 384 - . . scaffold1357 GLEAN promoter 86117 87116 0.978973 - . ID=CGI_10004038; scaffold1358 GLEAN promoter 55 1054 1 + . ID=CGI_10011351; scaffold1358 GLEAN mRNA 1055 2626 1 + . ID=CGI_10011351; scaffold1358 GLEAN mRNA 5387 7550 0.650648 - . ID=CGI_10011352; scaffold1358 GLEAN promoter 7551 8550 0.650648 - . ID=CGI_10011352; scaffold1358 TRF Tandem_Repeat 7957 7998 84 + . . scaffold1358 TRF Tandem_Repeat 8927 8952 52 + . . scaffold1358 TRF Tandem_Repeat 9781 9830 75 + . . scaffold1358 TRF Tandem_Repeat 10212 10255 88 + . . scaffold1358 TRF Tandem_Repeat 11705 11758 99 + . . scaffold1358 TRF Tandem_Repeat 18908 18953 92 + . . scaffold1358 TRF Tandem_Repeat 25305 25511 186 + . . scaffold1358 TRF Tandem_Repeat 25336 25511 110 + . . scaffold1358 TRF Tandem_Repeat 33362 33415 99 + . . scaffold1358 TRF Tandem_Repeat 46327 46364 76 + . . scaffold1358 WUBlastX LINE_L1-Tx1 59524 59736 47 - . . scaffold1358 WUBlastX LINE_L1 60496 60600 27 - . . scaffold1358 TRF Tandem_Repeat 73100 73218 157 + . . scaffold1358 GLEAN mRNA 73286 74154 1 - . ID=CGI_10011353; scaffold1358 GLEAN promoter 74155 75154 1 - . ID=CGI_10011353; scaffold1358 WUBlastX LINE_L2 79076 79468 66 - . . scaffold1358 TRF Tandem_Repeat 79626 79810 203 + . . scaffold1358 TRF Tandem_Repeat 81501 81568 136 + . . scaffold1358 GLEAN promoter 84355 85354 0.998702 + . ID=CGI_10011354; scaffold1358 GLEAN mRNA 85355 94331 0.998702 + . ID=CGI_10011354; scaffold1358 GLEAN mRNA 88585 99321 0.911767 - . ID=CGI_10011355; scaffold1358 TRF Tandem_Repeat 92152 92200 55 + . . scaffold1358 TRF Tandem_Repeat 92152 92200 55 + . . scaffold1358 TRF Tandem_Repeat 98464 98496 66 + . . scaffold1358 TRF Tandem_Repeat 98494 98520 54 + . . scaffold1358 GLEAN promoter 99322 100321 0.911767 - . ID=CGI_10011355; scaffold1358 GLEAN promoter 105659 106658 1 + . ID=CGI_10011356; scaffold1358 GLEAN mRNA 106659 112057 1 + . ID=CGI_10011356; scaffold1358 TRF Tandem_Repeat 110170 110602 329 + . . scaffold1358 TRF Tandem_Repeat 110170 110780 448 + . . scaffold1358 TRF Tandem_Repeat 110170 111361 424 + . . scaffold1358 TRF Tandem_Repeat 110612 111361 290 + . . scaffold1358 GLEAN mRNA 115783 118194 0.859559 - . ID=CGI_10011357; scaffold1358 GLEAN promoter 118195 119194 0.859559 - . ID=CGI_10011357; scaffold1358 TRF Tandem_Repeat 126839 126915 129 + . . scaffold1358 TRF Tandem_Repeat 130384 130432 98 + . . scaffold1358 TRF Tandem_Repeat 132712 132758 94 + . . scaffold1358 TRF Tandem_Repeat 132927 132970 88 + . . scaffold1358 TRF Tandem_Repeat 136527 136593 125 + . . scaffold1358 WUBlastX LINE_RTE-BovB 140374 141162 97 - . . scaffold1358 WUBlastX LINE_RTE-BovB 140548 141162 131 - . . scaffold1358 WUBlastX LINE_RTE-BovB 140971 141207 29 - . . scaffold1358 WUBlastX LINE_RTE-BovB 141289 141549 72 - . . scaffold1358 WUBlastX LINE_RTE-BovB 141346 141558 104 - . . scaffold1358 WUBlastX LINE_RTE-BovB 141468 141743 63 - . . scaffold1358 WUBlastX LINE_RTE-BovB 141953 142096 29 - . . scaffold1358 WUBlastX LINE_RTE-BovB 141986 142096 54 - . . scaffold1358 WUBlastX LINE_L1-Tx1 155333 155752 83 + . . scaffold1358 WUBlastX LINE_L1-Tx1 155429 155890 123 + . . scaffold1358 TRF Tandem_Repeat 184952 185001 57 + . . scaffold1358 WUBlastX DNA_Crypton 193544 193933 76 + . . scaffold1358 TRF Tandem_Repeat 199554 199594 82 + . . scaffold1358 WUBlastX DNA_Harbinger 205480 205656 37 + . . scaffold1358 WUBlastX DNA_Harbinger 205673 205822 78 + . . scaffold1358 WUBlastX DNA_Harbinger 205685 206158 60 + . . scaffold1358 WUBlastX LINE_RTE-X 213423 213848 80 - . . scaffold1358 TRF Tandem_Repeat 221881 221906 52 + . . scaffold1358 WUBlastX LINE_R2-Hero 238968 239432 132 - . . scaffold1358 GLEAN mRNA 249347 251641 1 - . ID=CGI_10011358; scaffold1358 GLEAN promoter 251642 252641 1 - . ID=CGI_10011358; scaffold1358 TRF Tandem_Repeat 252534 252577 81 + . . scaffold1358 WUBlastX LINE_CR1 253771 253917 21 - . . scaffold1358 WUBlastX LINE_CR1 254024 254116 44 - . . scaffold1358 WUBlastX LINE_CR1 254045 254134 30 - . . scaffold1358 WUBlastX LINE_CR1 254389 254586 54 - . . scaffold1358 WUBlastX LINE_CR1 254696 254791 21 - . . scaffold1358 WUBlastX LINE_CR1 254696 254770 29 - . . scaffold1358 WUBlastX LINE_L2 254699 254866 21 - . . scaffold1358 WUBlastX LINE_CR1 255158 255223 24 - . . scaffold1358 WUBlastX LINE_CR1 255187 255834 51 - . . scaffold1358 WUBlastX LINE_CR1 255190 256263 29 - . . scaffold1358 WUBlastX LINE_CR1 255652 255876 43 - . . scaffold1358 GLEAN mRNA 261418 272401 0.999979 - . ID=CGI_10011359; scaffold1358 TRF Tandem_Repeat 269723 269774 104 + . . scaffold1358 GLEAN promoter 272402 273401 0.999979 - . ID=CGI_10011359; scaffold1358 TRF Tandem_Repeat 278740 278770 62 + . . scaffold1358 GLEAN mRNA 286331 288473 1 - . ID=CGI_10011360; scaffold1358 GLEAN promoter 288474 288496 1 - . ID=CGI_10011360; scaffold1359 GLEAN mRNA 5152 25363 0.4134 - . ID=CGI_10013230; scaffold1359 TRF Tandem_Repeat 7893 7930 76 + . . scaffold1359 GLEAN promoter 25364 26363 0.4134 - . ID=CGI_10013230; scaffold1359 TRF Tandem_Repeat 29397 29450 99 + . . scaffold1359 GLEAN mRNA 41744 50354 0.742387 - . ID=CGI_10013231; scaffold1359 TRF Tandem_Repeat 42758 42802 90 + . . scaffold1359 GLEAN promoter 50355 51354 0.742387 - . ID=CGI_10013231; scaffold1359 GLEAN mRNA 51235 56319 0.742558 - . ID=CGI_10013232; scaffold1359 TRF Tandem_Repeat 54258 54301 54 + . . scaffold1359 TRF Tandem_Repeat 56085 56160 143 + . . scaffold1359 GLEAN promoter 56320 57319 0.742558 - . ID=CGI_10013232; scaffold1359 TRF Tandem_Repeat 56490 56524 61 + . . scaffold1359 TRF Tandem_Repeat 56555 56589 70 + . . scaffold1359 WUBlastX LINE_RTE-X 57061 57381 117 + . . scaffold1359 WUBlastX LINE_RTE-X 57070 57498 114 + . . scaffold1359 GLEAN promoter 58796 59795 0.805925 + . ID=CGI_10013233; scaffold1359 GLEAN mRNA 59796 79396 0.805925 + . ID=CGI_10013233; scaffold1359 TRF Tandem_Repeat 74351 74442 157 + . . scaffold1359 TRF Tandem_Repeat 86877 86921 90 + . . scaffold1359 TRF Tandem_Repeat 94456 94490 54 + . . scaffold1359 TRF Tandem_Repeat 103407 103728 303 + . . scaffold1359 TRF Tandem_Repeat 106722 107496 1040 + . . scaffold1359 TRF Tandem_Repeat 106863 107478 818 + . . scaffold1359 TRF Tandem_Repeat 109640 109928 465 + . . scaffold1359 GLEAN promoter 119621 120620 1 + . ID=CGI_10013234; scaffold1359 TRF Tandem_Repeat 120046 120070 50 + . . scaffold1359 GLEAN mRNA 120621 125613 1 + . ID=CGI_10013234; scaffold1359 TRF Tandem_Repeat 129529 129809 411 + . . scaffold1359 TRF Tandem_Repeat 129529 129824 526 + . . scaffold1359 TRF Tandem_Repeat 131082 131363 304 + . . scaffold1359 GLEAN promoter 132600 133599 0.654733 + . ID=CGI_10013235; scaffold1359 GLEAN mRNA 133600 136932 0.654733 + . ID=CGI_10013235; scaffold1359 TRF Tandem_Repeat 135730 135781 104 + . . scaffold1359 GLEAN mRNA 137228 157438 0.889848 - . ID=CGI_10013236; scaffold1359 TRF Tandem_Repeat 138137 138168 64 + . . scaffold1359 WUBlastX LINE_RTE-X 143042 143266 66 + . . scaffold1359 TRF Tandem_Repeat 144116 144703 741 + . . scaffold1359 TRF Tandem_Repeat 144145 144203 52 + . . scaffold1359 TRF Tandem_Repeat 145941 146133 293 + . . scaffold1359 TRF Tandem_Repeat 146147 146201 53 + . . scaffold1359 GLEAN promoter 157439 158438 0.889848 - . ID=CGI_10013236; scaffold1359 GLEAN mRNA 168675 176902 0.999998 - . ID=CGI_10013237; scaffold1359 TRF Tandem_Repeat 176474 176517 88 + . . scaffold1359 GLEAN promoter 176903 177902 0.999998 - . ID=CGI_10013237; scaffold1359 WUBlastX LINE_L2 180839 181018 24 - . . scaffold1359 WUBlastX LINE_I 180872 181006 37 - . . scaffold1359 WUBlastX LINE_L2 180975 181334 111 - . . scaffold1359 WUBlastX LINE_L2 181020 181307 150 - . . scaffold1359 WUBlastX LINE_CR1-L2 181023 181454 83 - . . scaffold1359 WUBlastX LINE_L2 181029 181601 44 - . . scaffold1359 WUBlastX LINE_L2 181588 181734 33 - . . scaffold1359 WUBlastX LINE_L2 181802 181831 21 - . . scaffold1359 WUBlastX LINE_L2 181915 181947 25 - . . scaffold1359 WUBlastX LINE_CR1 182122 182271 20 - . . scaffold1359 TRF Tandem_Repeat 183396 183445 100 + . . scaffold1359 GLEAN promoter 189278 190277 0.481228 + . ID=CGI_10013238; scaffold1359 GLEAN mRNA 190278 193862 0.481228 + . ID=CGI_10013238; scaffold1359 GLEAN mRNA 195938 205786 0.352828 - . ID=CGI_10013239; scaffold1359 GLEAN promoter 197528 198527 0.999786 + . ID=CGI_10013240; scaffold1359 GLEAN mRNA 198528 203607 0.999786 + . ID=CGI_10013240; scaffold1359 GLEAN promoter 205787 206786 0.352828 - . ID=CGI_10013239; scaffold1359 GLEAN mRNA 206619 208229 1 - . ID=CGI_10013241; scaffold1359 GLEAN promoter 208230 209229 1 - . ID=CGI_10013241; scaffold1359 GLEAN mRNA 209372 212379 0.882924 - . ID=CGI_10013242; scaffold1359 GLEAN promoter 212380 213379 0.882924 - . ID=CGI_10013242; scaffold1359 GLEAN promoter 217104 218103 0.618186 + . ID=CGI_10013243; scaffold1359 GLEAN mRNA 218104 218595 0.618186 + . ID=CGI_10013243; scaffold1359 TRF Tandem_Repeat 228803 229526 1125 + . . scaffold1359 GLEAN mRNA 231045 231436 1 - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 231114 231992 27 + . . scaffold1359 WUBlastX DNA_IS4EU 231420 232034 27 + . . scaffold1359 GLEAN promoter 231437 232436 1 - . ID=CGI_10013244; scaffold1359 WUBlastX DNA_IS4EU 231669 232058 75 + . . scaffold1359 WUBlastX DNA_IS4EU 232215 232349 28 + . . scaffold1359 TRF Tandem_Repeat 233361 233393 66 + . . scaffold1359 WUBlastX DNA_TcMar-Tc1 234502 234789 56 + . . scaffold1359 WUBlastX DNA_TcMar-Tc1 234610 234933 72 + . . scaffold1359 WUBlastX DNA_TcMar-Tc1 234640 234912 103 + . . scaffold1359 TRF Tandem_Repeat 238544 239403 1124 + . . scaffold1359 TRF Tandem_Repeat 240956 242082 1480 + . . scaffold1359 TRF Tandem_Repeat 242113 242152 62 + . . scaffold1359 TRF Tandem_Repeat 246922 246999 91 + . . scaffold1359 WUBlastX LTR_DIRS 264883 265686 117 + . . scaffold1359 WUBlastX LTR_DIRS 265024 265686 141 + . . scaffold1359 WUBlastX LTR_DIRS 265105 265812 39 + . . scaffold1359 WUBlastX LTR_DIRS 265793 266188 29 + . . scaffold1359 WUBlastX LTR_DIRS 266248 266433 26 + . . scaffold1359 WUBlastX DNA_MuDR 270447 270758 90 - . . scaffold1359 GLEAN mRNA 272552 272755 0.999372 - . ID=CGI_10013247; scaffold1359 GLEAN promoter 272756 273755 0.999372 - . ID=CGI_10013247; scaffold1359 WUBlastX LINE_CR1 274789 275505 31 - . . scaffold1359 WUBlastX LINE_L2 274789 275142 46 - . . scaffold1359 WUBlastX LINE_RTE-X 274858 275190 68 - . . scaffold1359 WUBlastX LINE_RTE-X 274915 275181 72 - . . scaffold1359 WUBlastX LINE_L2 274978 275391 92 - . . scaffold1359 GLEAN mRNA 278512 287094 1 - . ID=CGI_10013248; scaffold1359 TRF Tandem_Repeat 283225 283353 240 + . . scaffold1359 GLEAN promoter 287095 288094 1 - . ID=CGI_10013248; scaffold1359 GLEAN mRNA 287670 337310 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 311682 311986 496 + . . scaffold1359 TRF Tandem_Repeat 312664 313103 619 + . . scaffold1359 TRF Tandem_Repeat 313310 313423 93 + . . scaffold1359 TRF Tandem_Repeat 315934 316227 518 + . . scaffold1359 TRF Tandem_Repeat 316852 316908 87 + . . scaffold1359 TRF Tandem_Repeat 317605 317792 193 + . . scaffold1359 TRF Tandem_Repeat 334458 334513 98 + . . scaffold1359 GLEAN promoter 337311 338310 0.372616 - . ID=CGI_10013249; scaffold1359 TRF Tandem_Repeat 340670 341506 971 + . . scaffold1359 GLEAN mRNA 344352 347959 0.999661 - . ID=CGI_10013250; scaffold1359 TRF Tandem_Repeat 345095 345354 61 + . . scaffold1359 TRF Tandem_Repeat 345148 345290 171 + . . scaffold1359 TRF Tandem_Repeat 345407 345519 109 + . . scaffold1359 TRF Tandem_Repeat 345506 345630 110 + . . scaffold1359 TRF Tandem_Repeat 345534 345630 115 + . . scaffold1359 GLEAN promoter 347960 348959 0.999661 - . ID=CGI_10013250; scaffold1360 GLEAN mRNA 682 10322 0.761163 - . ID=CGI_10022623; scaffold1360 GLEAN promoter 10323 11322 0.761163 - . ID=CGI_10022623; scaffold1360 TRF Tandem_Repeat 12832 13117 527 + . . scaffold1360 GLEAN promoter 18050 19049 0.715639 + . ID=CGI_10022624; scaffold1360 GLEAN mRNA 19050 50648 0.715639 + . ID=CGI_10022624; scaffold1360 WUBlastX LINE_RTE-BovB 39707 40006 163 - . . scaffold1360 WUBlastX LINE_RTE-BovB 39710 40093 50 - . . scaffold1360 WUBlastX LINE_RTE-BovB 40089 40307 97 - . . scaffold1360 WUBlastX LINE_RTE-BovB 40203 40778 144 - . . scaffold1360 WUBlastX LINE_RTE-BovB 40305 40769 285 - . . scaffold1360 WUBlastX LINE_RTE-BovB 40822 41097 104 - . . scaffold1360 WUBlastX LINE_RTE-BovB 40846 41184 44 - . . scaffold1360 TRF Tandem_Repeat 58418 58584 131 + . . scaffold1360 TRF Tandem_Repeat 62085 62896 1340 + . . scaffold1360 TRF Tandem_Repeat 68362 68450 160 + . . scaffold1360 GLEAN promoter 95226 96225 1 + . ID=CGI_10022625; scaffold1360 GLEAN mRNA 96226 104863 1 + . ID=CGI_10022625; scaffold1360 TRF Tandem_Repeat 100230 100771 604 + . . scaffold1360 GLEAN promoter 108404 109403 0.913813 + . ID=CGI_10022626; scaffold1360 GLEAN mRNA 109404 117235 0.913813 + . ID=CGI_10022626; scaffold1360 TRF Tandem_Repeat 110638 110935 501 + . . scaffold1360 TRF Tandem_Repeat 114528 115020 842 + . . scaffold1360 TRF Tandem_Repeat 114554 115014 276 + . . scaffold1360 TRF Tandem_Repeat 116026 116073 78 + . . scaffold1360 GLEAN promoter 117759 118758 0.647013 + . ID=CGI_10022627; scaffold1360 TRF Tandem_Repeat 118591 118656 125 + . . scaffold1360 GLEAN mRNA 118759 122248 0.647013 + . ID=CGI_10022627; scaffold1360 TRF Tandem_Repeat 122755 122823 138 + . . scaffold1360 GLEAN mRNA 123074 124310 1 - . ID=CGI_10022628; scaffold1360 GLEAN promoter 124311 125310 1 - . ID=CGI_10022628; scaffold1360 GLEAN mRNA 125233 126277 0.814159 - . ID=CGI_10022629; scaffold1360 TRF Tandem_Repeat 126060 126090 53 + . . scaffold1360 GLEAN promoter 126278 127277 0.814159 - . ID=CGI_10022629; scaffold1360 TRF Tandem_Repeat 128406 128451 92 + . . scaffold1360 TRF Tandem_Repeat 130994 131074 162 + . . scaffold1360 GLEAN mRNA 132935 137416 1 - . ID=CGI_10022630; scaffold1360 GLEAN promoter 137417 138416 1 - . ID=CGI_10022630; scaffold1360 TRF Tandem_Repeat 138104 138143 80 + . . scaffold1360 TRF Tandem_Repeat 138203 138267 130 + . . scaffold1360 GLEAN mRNA 139832 143951 1 - . ID=CGI_10022631; scaffold1360 GLEAN promoter 143952 144951 1 - . ID=CGI_10022631; scaffold1360 GLEAN mRNA 147527 148473 1 - . ID=CGI_10022632; scaffold1360 GLEAN promoter 148474 149473 1 - . ID=CGI_10022632; scaffold1360 TRF Tandem_Repeat 148943 149007 121 + . . scaffold1360 TRF Tandem_Repeat 149213 149583 476 + . . scaffold1360 GLEAN mRNA 151005 156149 0.921886 - . ID=CGI_10022633; scaffold1360 GLEAN promoter 156150 157149 0.921886 - . ID=CGI_10022633; scaffold1360 GLEAN mRNA 160922 172811 0.999286 - . ID=CGI_10022634; scaffold1360 TRF Tandem_Repeat 165853 165916 128 + . . scaffold1360 TRF Tandem_Repeat 167863 168076 295 + . . scaffold1360 TRF Tandem_Repeat 168440 168964 316 + . . scaffold1360 TRF Tandem_Repeat 168440 168960 272 + . . scaffold1360 GLEAN promoter 172812 173811 0.999286 - . ID=CGI_10022634; scaffold1360 TRF Tandem_Repeat 172962 173013 104 + . . scaffold1360 GLEAN mRNA 174097 180132 1 - . ID=CGI_10022635; scaffold1360 TRF Tandem_Repeat 176246 176359 102 + . . scaffold1360 GLEAN promoter 179938 180937 0.801621 + . ID=CGI_10022636; scaffold1360 GLEAN promoter 180133 181132 1 - . ID=CGI_10022635; scaffold1360 GLEAN mRNA 180938 210281 0.801621 + . ID=CGI_10022636; scaffold1360 TRF Tandem_Repeat 196831 196859 58 + . . scaffold1360 GLEAN mRNA 200061 234492 0.701856 - . ID=CGI_10022637; scaffold1360 TRF Tandem_Repeat 200400 200432 66 + . . scaffold1360 TRF Tandem_Repeat 200660 200689 60 + . . scaffold1360 TRF Tandem_Repeat 206307 206354 87 + . . scaffold1360 TRF Tandem_Repeat 207503 207532 60 + . . scaffold1360 TRF Tandem_Repeat 210892 211130 359 + . . scaffold1360 TRF Tandem_Repeat 211248 212073 716 + . . scaffold1360 TRF Tandem_Repeat 220647 220686 53 + . . scaffold1360 TRF Tandem_Repeat 220717 223053 2380 + . . scaffold1360 TRF Tandem_Repeat 220717 223014 2843 + . . scaffold1360 TRF Tandem_Repeat 221675 221730 67 + . . scaffold1360 TRF Tandem_Repeat 224553 225640 1675 + . . scaffold1360 TRF Tandem_Repeat 230834 231297 811 + . . scaffold1360 GLEAN promoter 233823 234822 0.593391 + . ID=CGI_10022638; scaffold1360 GLEAN promoter 234493 235492 0.701856 - . ID=CGI_10022637; scaffold1360 GLEAN mRNA 234823 239830 0.593391 + . ID=CGI_10022638; scaffold1360 GLEAN promoter 247213 248212 1 + . ID=CGI_10022639; scaffold1360 GLEAN mRNA 248213 249349 1 + . ID=CGI_10022639; scaffold1360 GLEAN promoter 252423 253422 0.618186 + . ID=CGI_10022640; scaffold1360 GLEAN mRNA 253423 253578 0.618186 + . ID=CGI_10022640; scaffold1360 GLEAN mRNA 253519 262518 0.999979 - . ID=CGI_10022641; scaffold1360 TRF Tandem_Repeat 254786 254841 67 + . . scaffold1360 GLEAN promoter 262519 263518 0.999979 - . ID=CGI_10022641; scaffold1360 TRF Tandem_Repeat 264581 264625 90 + . . scaffold1360 GLEAN promoter 264870 265869 0.478993 + . ID=CGI_10022642; scaffold1360 GLEAN mRNA 265870 278934 0.478993 + . ID=CGI_10022642; scaffold1360 TRF Tandem_Repeat 267761 268395 792 + . . scaffold1360 TRF Tandem_Repeat 267761 268394 877 + . . scaffold1360 GLEAN promoter 283342 284341 0.999939 + . ID=CGI_10022643; scaffold1360 GLEAN mRNA 284342 300596 0.999939 + . ID=CGI_10022643; scaffold1360 TRF Tandem_Repeat 288777 289046 330 + . . scaffold1360 TRF Tandem_Repeat 290187 290330 85 + . . scaffold1360 TRF Tandem_Repeat 290468 290731 492 + . . scaffold1360 TRF Tandem_Repeat 290499 290716 190 + . . scaffold1360 TRF Tandem_Repeat 293124 293148 50 + . . scaffold1360 TRF Tandem_Repeat 298226 298282 114 + . . scaffold1360 TRF Tandem_Repeat 298381 298420 80 + . . scaffold1360 TRF Tandem_Repeat 299376 299413 51 + . . scaffold1360 GLEAN promoter 299601 300600 0.654722 + . ID=CGI_10022644; scaffold1360 GLEAN mRNA 300601 302301 0.654722 + . ID=CGI_10022644; scaffold1360 GLEAN mRNA 303040 307935 0.999395 - . ID=CGI_10022645; scaffold1360 TRF Tandem_Repeat 304734 304796 119 + . . scaffold1360 GLEAN promoter 307936 308935 0.999395 - . ID=CGI_10022645; scaffold1360 GLEAN mRNA 310100 329385 0.531017 - . ID=CGI_10022646; scaffold1360 TRF Tandem_Repeat 312393 312429 74 + . . scaffold1360 TRF Tandem_Repeat 315387 315438 104 + . . scaffold1360 TRF Tandem_Repeat 319117 319180 128 + . . scaffold1360 TRF Tandem_Repeat 321855 321901 94 + . . scaffold1360 TRF Tandem_Repeat 322497 322553 114 + . . scaffold1360 TRF Tandem_Repeat 325109 325182 139 + . . scaffold1360 GLEAN promoter 329386 330385 0.531017 - . ID=CGI_10022646; scaffold1360 GLEAN mRNA 332252 333400 0.636299 - . ID=CGI_10022647; scaffold1360 GLEAN promoter 333401 334400 0.636299 - . ID=CGI_10022647; scaffold1360 GLEAN mRNA 336449 337597 0.996198 - . ID=CGI_10022648; scaffold1360 GLEAN promoter 337598 338597 0.996198 - . ID=CGI_10022648; scaffold1360 TRF Tandem_Repeat 340908 340966 52 + . . scaffold1360 TRF Tandem_Repeat 340981 341042 58 + . . scaffold1360 TRF Tandem_Repeat 340981 341042 58 + . . scaffold1360 TRF Tandem_Repeat 341416 341474 52 + . . scaffold1360 TRF Tandem_Repeat 341489 341550 58 + . . scaffold1360 TRF Tandem_Repeat 341489 341550 58 + . . scaffold1360 TRF Tandem_Repeat 342335 342452 73 + . . scaffold1360 GLEAN promoter 344459 345458 0.999976 + . ID=CGI_10022649; scaffold1360 GLEAN mRNA 345459 349792 0.999976 + . ID=CGI_10022649; scaffold1360 GLEAN promoter 348990 349989 0.819489 + . ID=CGI_10022650; scaffold1360 GLEAN mRNA 349990 350688 0.819489 + . ID=CGI_10022650; scaffold1360 GLEAN mRNA 354811 367582 0.999676 - . ID=CGI_10022651; scaffold1360 GLEAN promoter 367583 368582 0.999676 - . ID=CGI_10022651; scaffold1360 TRF Tandem_Repeat 367867 367895 58 + . . scaffold1360 TRF Tandem_Repeat 375924 376105 178 + . . scaffold1360 GLEAN promoter 376011 377010 0.644549 + . ID=CGI_10022652; scaffold1360 GLEAN mRNA 377011 383564 0.644549 + . ID=CGI_10022652; scaffold1360 GLEAN promoter 383068 384067 0.768021 + . ID=CGI_10022653; scaffold1360 GLEAN mRNA 384068 385225 0.768021 + . ID=CGI_10022653; scaffold1360 TRF Tandem_Repeat 396764 396862 135 + . . scaffold1360 TRF Tandem_Repeat 398445 398590 103 + . . scaffold1360 TRF Tandem_Repeat 398500 398590 146 + . . scaffold1360 TRF Tandem_Repeat 403765 403795 53 + . . scaffold1360 TRF Tandem_Repeat 429726 429827 132 + . . scaffold1360 GLEAN promoter 431862 432861 0.963479 + . ID=CGI_10022654; scaffold1360 GLEAN mRNA 432862 441455 0.963479 + . ID=CGI_10022654; scaffold1360 GLEAN promoter 440863 441862 0.939893 + . ID=CGI_10022655; scaffold1360 GLEAN mRNA 441863 455531 0.939893 + . ID=CGI_10022655; scaffold1360 TRF Tandem_Repeat 442677 442726 66 + . . scaffold1360 TRF Tandem_Repeat 455862 455895 59 + . . scaffold1360 GLEAN mRNA 456106 459750 1 - . ID=CGI_10022656; scaffold1360 GLEAN promoter 459751 460750 1 - . ID=CGI_10022656; scaffold1360 TRF Tandem_Repeat 467212 467258 94 + . . scaffold1360 WUBlastX LTR_DIRS 469593 469817 48 + . . scaffold1360 WUBlastX LTR_DIRS 469641 469814 74 + . . scaffold1360 WUBlastX LTR_DIRS 469801 470031 64 + . . scaffold1360 WUBlastX LTR_DIRS 470966 471178 96 + . . scaffold1360 WUBlastX LTR_Ngaro 474488 475039 321 + . . scaffold1360 WUBlastX LTR_Ngaro 475173 475385 51 + . . scaffold1360 WUBlastX LTR_Ngaro 475388 475594 48 + . . scaffold1360 WUBlastX LTR_Ngaro 475784 475981 57 + . . scaffold1360 WUBlastX LTR_Ngaro 475820 475996 65 + . . scaffold1360 TRF Tandem_Repeat 496645 496706 124 + . . scaffold1360 WUBlastX LINE_CR1 498046 498705 190 + . . scaffold1360 WUBlastX LINE_I 498304 498975 35 + . . scaffold1360 WUBlastX LINE_L1-Tx1 499355 499399 20 + . . scaffold1360 WUBlastX LINE_L1-Tx1 499372 499584 49 + . . scaffold1360 WUBlastX LINE_L1-Tx1 499372 499644 20 + . . scaffold1360 WUBlastX LINE_L1-Tx1 499402 499581 77 + . . scaffold1360 WUBlastX LINE_L1-Tx1 500404 500520 27 + . . scaffold1360 WUBlastX LINE_L1 500847 500978 30 + . . scaffold1360 WUBlastX LINE_L1-Tx1 500871 500978 31 + . . scaffold1360 WUBlastX LINE_L1 500877 500951 31 + . . scaffold1360 WUBlastX LINE_L1 501031 502821 145 + . . scaffold1360 WUBlastX LINE_L1-Tx1 501592 502185 241 + . . scaffold1360 WUBlastX LINE_L1-Tx1 501682 503127 385 + . . scaffold1360 WUBlastX LINE_L1-Tx1 505157 506875 183 - . . scaffold1360 WUBlastX LINE_L1-Tx1 505439 506875 227 - . . scaffold1360 WUBlastX LINE_DRE 506495 506950 72 - . . scaffold1360 TRF Tandem_Repeat 509468 509523 103 + . . scaffold1360 GLEAN mRNA 514265 543442 0.465285 - . ID=CGI_10022657; scaffold1360 TRF Tandem_Repeat 519219 519255 74 + . . scaffold1360 TRF Tandem_Repeat 519828 519873 58 + . . scaffold1360 TRF Tandem_Repeat 522733 522808 62 + . . scaffold1360 TRF Tandem_Repeat 522736 522812 70 + . . scaffold1360 TRF Tandem_Repeat 528902 528933 55 + . . scaffold1360 TRF Tandem_Repeat 529489 529525 65 + . . scaffold1360 GLEAN promoter 543443 544442 0.465285 - . ID=CGI_10022657; scaffold1360 GLEAN mRNA 545643 546146 0.532287 - . ID=CGI_10022658; scaffold1360 GLEAN promoter 546147 547146 0.532287 - . ID=CGI_10022658; scaffold1360 GLEAN promoter 549744 550743 0.990124 + . ID=CGI_10022659; scaffold1360 GLEAN mRNA 550744 569328 0.990124 + . ID=CGI_10022659; scaffold1360 TRF Tandem_Repeat 560408 560435 56 + . . scaffold1360 TRF Tandem_Repeat 566386 566875 467 + . . scaffold1360 TRF Tandem_Repeat 566391 566859 613 + . . scaffold1360 GLEAN mRNA 570971 571312 1 - . ID=CGI_10022660; scaffold1360 GLEAN promoter 571313 572312 1 - . ID=CGI_10022660; scaffold1360 WUBlastX LINE_L2 577749 579317 1008 - . . scaffold1360 TRF Tandem_Repeat 600791 601103 367 + . . scaffold1360 GLEAN promoter 604985 605984 0.387765 + . ID=CGI_10022661; scaffold1360 TRF Tandem_Repeat 605598 605644 94 + . . scaffold1360 TRF Tandem_Repeat 605644 605677 68 + . . scaffold1360 TRF Tandem_Repeat 605816 605870 101 + . . scaffold1360 GLEAN mRNA 605985 606185 0.387765 + . ID=CGI_10022661; scaffold1360 TRF Tandem_Repeat 608721 608768 87 + . . scaffold1360 GLEAN promoter 609268 610267 0.531611 + . ID=CGI_10022662; scaffold1360 GLEAN mRNA 610268 611503 0.531611 + . ID=CGI_10022662; scaffold1360 GLEAN mRNA 615048 617593 0.994026 - . ID=CGI_10022663; scaffold1360 GLEAN promoter 617594 618593 0.994026 - . ID=CGI_10022663; scaffold1360 TRF Tandem_Repeat 628784 628841 98 + . . scaffold1360 TRF Tandem_Repeat 629035 629201 199 + . . scaffold1360 GLEAN mRNA 630272 630790 0.878734 - . ID=CGI_10022664; scaffold1360 GLEAN promoter 630791 631790 0.878734 - . ID=CGI_10022664; scaffold1360 WUBlastX DNA_TcMar-Marin 631259 631501 85 - . . scaffold1360 GLEAN mRNA 635551 638516 0.873921 - . ID=CGI_10022665; scaffold1360 GLEAN promoter 638517 639516 0.873921 - . ID=CGI_10022665; scaffold1360 WUBlastX LINE_RTE-X 642825 643037 27 - . . scaffold1360 WUBlastX LINE_RTE-X 643013 643132 35 - . . scaffold1360 WUBlastX LINE_RTE-X 643129 643575 76 - . . scaffold1360 WUBlastX LINE_RTE-X 643387 644097 76 - . . scaffold1360 WUBlastX LINE_RTE-X 643655 643915 107 - . . scaffold1360 WUBlastX LINE_RTE-X 643882 644142 103 - . . scaffold1360 WUBlastX LINE_RTE-X 643995 644525 154 - . . scaffold1360 WUBlastX LINE_RTE-X 644109 644540 284 - . . scaffold1360 WUBlastX LINE_RTE-X 644542 644796 103 - . . scaffold1360 WUBlastX LINE_RTE-X 644542 644886 101 - . . scaffold1360 WUBlastX LINE_RTE-X 644542 645027 74 - . . scaffold1360 GLEAN mRNA 648258 649619 0.817387 - . ID=CGI_10022666; scaffold1360 GLEAN promoter 649620 650619 0.817387 - . ID=CGI_10022666; scaffold1360 TRF Tandem_Repeat 653598 653652 110 + . . scaffold1360 WUBlastX DNA_PiggyBac 668698 668991 56 + . . scaffold1360 WUBlastX DNA_PiggyBac 668698 668907 85 + . . scaffold1360 WUBlastX DNA_PiggyBac 669098 669238 61 + . . scaffold1360 WUBlastX DNA_PiggyBac 669137 669295 69 + . . scaffold1360 WUBlastX DNA_PiggyBac 669137 669343 45 + . . scaffold1360 TRF Tandem_Repeat 681579 682251 1157 + . . scaffold1360 TRF Tandem_Repeat 685273 685322 100 + . . scaffold1360 TRF Tandem_Repeat 686551 686606 112 + . . scaffold1360 GLEAN mRNA 691030 719045 0.999999 - . ID=CGI_10022667; scaffold1360 TRF Tandem_Repeat 694439 694499 113 + . . scaffold1360 TRF Tandem_Repeat 709377 709673 168 + . . scaffold1360 TRF Tandem_Repeat 709377 709677 498 + . . scaffold1360 TRF Tandem_Repeat 715305 715353 82 + . . scaffold1360 TRF Tandem_Repeat 716709 717079 343 + . . scaffold1360 GLEAN promoter 719046 720045 0.999999 - . ID=CGI_10022667; scaffold1360 GLEAN promoter 719788 720787 0.90396 + . ID=CGI_10022668; scaffold1360 GLEAN mRNA 720788 721491 0.90396 + . ID=CGI_10022668; scaffold1360 GLEAN promoter 726481 727480 0.999545 + . ID=CGI_10022669; scaffold1360 GLEAN mRNA 727481 729725 0.999545 + . ID=CGI_10022669; scaffold1360 GLEAN promoter 731870 732869 0.95405 + . ID=CGI_10022670; scaffold1360 TRF Tandem_Repeat 732128 732183 76 + . . scaffold1360 WUBlastX LINE_CR1-L2 732240 732386 29 + . . scaffold1360 GLEAN mRNA 732870 739512 0.95405 + . ID=CGI_10022670; scaffold1360 WUBlastX LINE_RTE-X 734269 734706 141 - . . scaffold1360 WUBlastX LINE_RTE-X 734374 734751 144 - . . scaffold1360 WUBlastX LINE_RTE-X 734404 734712 176 - . . scaffold1360 TRF Tandem_Repeat 736941 736988 87 + . . scaffold1360 WUBlastX LTR_DIRS 739562 740014 65 + . . scaffold1360 WUBlastX LTR_DIRS 740020 740490 291 + . . scaffold1360 WUBlastX LTR_DIRS 740020 740586 148 + . . scaffold1360 WUBlastX LTR_DIRS 740461 741051 145 + . . scaffold1360 WUBlastX LTR_DIRS 741012 741170 33 + . . scaffold1360 WUBlastX LTR_Ngaro 741161 741850 41 + . . scaffold1360 WUBlastX LTR_DIRS 741272 741871 266 + . . scaffold1360 WUBlastX LTR_DIRS 741849 742175 149 + . . scaffold1360 WUBlastX LINE_RTE-X 743856 744032 92 + . . scaffold1360 GLEAN promoter 743929 744928 0.999999 + . ID=CGI_10022671; scaffold1360 WUBlastX LINE_RTE-X 744032 744214 125 + . . scaffold1360 TRF Tandem_Repeat 744269 744310 84 + . . scaffold1360 GLEAN mRNA 744929 745767 0.999999 + . ID=CGI_10022671; scaffold1360 TRF Tandem_Repeat 747649 747708 84 + . . scaffold1360 WUBlastX RC_Helitron 747710 747985 90 - . . scaffold1360 WUBlastX LTR_Gypsy 748006 748842 237 - . . scaffold1360 WUBlastX LTR_Gypsy 748030 749037 222 - . . scaffold1360 WUBlastX LTR_Gypsy 748162 748842 265 - . . scaffold1360 WUBlastX LTR_Gypsy 748992 749324 102 - . . scaffold1360 WUBlastX LTR_Gypsy 748992 749393 38 - . . scaffold1360 WUBlastX LTR_Gypsy 753218 753391 101 + . . scaffold1360 WUBlastX LTR_Gypsy 753409 753513 24 + . . scaffold1360 GLEAN promoter 763388 764387 0.99818 + . ID=CGI_10022672; scaffold1360 GLEAN mRNA 764388 769167 0.99818 + . ID=CGI_10022672; scaffold1360 TRF Tandem_Repeat 766987 767131 121 + . . scaffold1360 TRF Tandem_Repeat 767439 767468 60 + . . scaffold1360 GLEAN mRNA 777367 777905 1 - . ID=CGI_10022673; scaffold1360 GLEAN promoter 777906 778905 1 - . ID=CGI_10022673; scaffold1360 GLEAN mRNA 777977 781467 1 - . ID=CGI_10022674; scaffold1360 GLEAN promoter 781468 782295 1 - . ID=CGI_10022674; scaffold1362 GLEAN promoter 1 665 0.73822 + . ID=CGI_10023924; scaffold1362 GLEAN mRNA 666 18667 0.73822 + . ID=CGI_10023924; scaffold1362 TRF Tandem_Repeat 1295 1325 62 + . . scaffold1362 TRF Tandem_Repeat 3803 3879 154 + . . scaffold1362 TRF Tandem_Repeat 17270 17315 83 + . . scaffold1362 GLEAN promoter 33008 34007 0.999675 + . ID=CGI_10023925; scaffold1362 GLEAN mRNA 34008 34678 0.999675 + . ID=CGI_10023925; scaffold1362 TRF Tandem_Repeat 40224 40253 60 + . . scaffold1362 TRF Tandem_Repeat 50692 51622 990 + . . scaffold1362 GLEAN mRNA 57495 60087 1 - . ID=CGI_10023926; scaffold1362 GLEAN promoter 60088 61087 1 - . ID=CGI_10023926; scaffold1362 GLEAN mRNA 61323 65307 1 - . ID=CGI_10023927; scaffold1362 TRF Tandem_Repeat 61548 61582 70 + . . scaffold1362 GLEAN promoter 65308 66307 1 - . ID=CGI_10023927; scaffold1362 GLEAN promoter 75589 76588 0.593391 + . ID=CGI_10023928; scaffold1362 GLEAN mRNA 76589 87812 0.593391 + . ID=CGI_10023928; scaffold1362 TRF Tandem_Repeat 77133 77163 62 + . . scaffold1362 TRF Tandem_Repeat 77611 77664 108 + . . scaffold1362 TRF Tandem_Repeat 78405 78446 84 + . . scaffold1362 TRF Tandem_Repeat 82063 82096 50 + . . scaffold1362 TRF Tandem_Repeat 106129 106199 76 + . . scaffold1362 TRF Tandem_Repeat 109769 110142 255 + . . scaffold1362 TRF Tandem_Repeat 109769 110122 282 + . . scaffold1362 TRF Tandem_Repeat 109769 110122 262 + . . scaffold1362 TRF Tandem_Repeat 109830 110142 299 + . . scaffold1362 TRF Tandem_Repeat 109850 109908 50 + . . scaffold1362 TRF Tandem_Repeat 110067 110155 92 + . . scaffold1362 TRF Tandem_Repeat 118744 118823 160 + . . scaffold1362 GLEAN promoter 120469 121468 1 + . ID=CGI_10023929; scaffold1362 GLEAN mRNA 121469 131213 1 + . ID=CGI_10023929; scaffold1362 TRF Tandem_Repeat 122134 122168 70 + . . scaffold1362 TRF Tandem_Repeat 125555 125598 88 + . . scaffold1362 GLEAN mRNA 133219 139042 0.836236 - . ID=CGI_10023930; scaffold1362 GLEAN promoter 139043 140042 0.836236 - . ID=CGI_10023930; scaffold1362 TRF Tandem_Repeat 147603 147642 80 + . . scaffold1362 TRF Tandem_Repeat 147794 147830 74 + . . scaffold1362 TRF Tandem_Repeat 148762 148799 67 + . . scaffold1362 GLEAN promoter 158076 159075 0.422024 + . ID=CGI_10023931; scaffold1362 GLEAN mRNA 159076 170659 0.422024 + . ID=CGI_10023931; scaffold1362 TRF Tandem_Repeat 160728 160783 76 + . . scaffold1362 GLEAN promoter 175226 176225 1 + . ID=CGI_10023932; scaffold1362 GLEAN mRNA 176226 180640 1 + . ID=CGI_10023932; scaffold1362 TRF Tandem_Repeat 177027 177089 110 + . . scaffold1362 GLEAN mRNA 178873 194785 0.319683 - . ID=CGI_10023933; scaffold1362 GLEAN promoter 194786 195785 0.319683 - . ID=CGI_10023933; scaffold1362 TRF Tandem_Repeat 196326 196374 98 + . . scaffold1362 GLEAN mRNA 196782 238172 0.653945 - . ID=CGI_10023934; scaffold1362 WUBlastX LTR_Gypsy 198881 202513 425 + . . scaffold1362 WUBlastX LTR_Gypsy 200288 202450 1167 + . . scaffold1362 WUBlastX LTR_Gypsy-Cigr 201032 203992 1285 + . . scaffold1362 TRF Tandem_Repeat 226030 226057 56 + . . scaffold1362 TRF Tandem_Repeat 233568 233645 138 + . . scaffold1362 TRF Tandem_Repeat 235641 235749 119 + . . scaffold1362 GLEAN promoter 238173 239172 0.653945 - . ID=CGI_10023934; scaffold1362 GLEAN promoter 241942 242941 0.998816 + . ID=CGI_10023935; scaffold1362 GLEAN mRNA 242942 243943 0.998816 + . ID=CGI_10023935; scaffold1362 TRF Tandem_Repeat 244515 244567 106 + . . scaffold1362 WUBlastX LTR_Gypsy? 246519 247574 66 - . . scaffold1362 WUBlastX LTR_Gypsy 247320 248192 84 - . . scaffold1362 WUBlastX LTR_Gypsy 249134 249259 36 - . . scaffold1362 WUBlastX LTR_Gypsy 249415 250587 207 - . . scaffold1362 WUBlastX LTR_Gypsy 249676 251865 856 - . . scaffold1362 WUBlastX LTR_Gypsy 251864 253402 650 - . . scaffold1362 WUBlastX LTR_Gypsy 252995 253981 83 - . . scaffold1362 WUBlastX LTR_Gypsy 253865 254080 72 - . . scaffold1362 WUBlastX LTR_Gypsy 254101 254334 35 - . . scaffold1362 TRF Tandem_Repeat 258451 258489 78 + . . scaffold1362 GLEAN promoter 263769 264768 0.581781 + . ID=CGI_10023936; scaffold1362 GLEAN mRNA 264769 270928 0.581781 + . ID=CGI_10023936; scaffold1362 TRF Tandem_Repeat 265140 265192 106 + . . scaffold1362 TRF Tandem_Repeat 268052 268096 90 + . . scaffold1362 GLEAN mRNA 270439 274596 1 - . ID=CGI_10023937; scaffold1362 GLEAN promoter 274597 275596 1 - . ID=CGI_10023937; scaffold1362 GLEAN promoter 275958 276957 0.99239 + . ID=CGI_10023938; scaffold1362 GLEAN mRNA 276958 284523 0.99239 + . ID=CGI_10023938; scaffold1362 TRF Tandem_Repeat 277433 277463 62 + . . scaffold1362 TRF Tandem_Repeat 284663 284725 119 + . . scaffold1362 TRF Tandem_Repeat 305055 305102 87 + . . scaffold1362 GLEAN mRNA 318915 327618 0.70295 - . ID=CGI_10023939; scaffold1362 GLEAN promoter 327619 328618 0.70295 - . ID=CGI_10023939; scaffold1362 GLEAN mRNA 330460 343507 0.997706 - . ID=CGI_10023940; scaffold1362 GLEAN promoter 343508 344507 0.997706 - . ID=CGI_10023940; scaffold1362 GLEAN promoter 343854 344853 0.222082 + . ID=CGI_10023941; scaffold1362 GLEAN mRNA 344854 375688 0.222082 + . ID=CGI_10023941; scaffold1362 TRF Tandem_Repeat 349974 349998 50 + . . scaffold1362 TRF Tandem_Repeat 375925 376151 368 + . . scaffold1362 GLEAN mRNA 378943 383486 1 - . ID=CGI_10023942; scaffold1362 GLEAN promoter 382825 383824 0.993856 + . ID=CGI_10023943; scaffold1362 GLEAN promoter 383487 384486 1 - . ID=CGI_10023942; scaffold1362 GLEAN mRNA 383825 399196 0.993856 + . ID=CGI_10023943; scaffold1362 TRF Tandem_Repeat 384806 384842 74 + . . scaffold1362 WUBlastX LINE_CR1-L2 403170 403754 39 - . . scaffold1362 WUBlastX LINE_CR1-L2 403170 403583 110 - . . scaffold1362 WUBlastX LINE_CR1 408228 408410 26 + . . scaffold1362 WUBlastX LINE_L2 408258 408905 186 + . . scaffold1362 WUBlastX LINE_L2 408547 410772 265 + . . scaffold1362 WUBlastX LINE_L2 408910 411123 1263 + . . scaffold1362 TRF Tandem_Repeat 419069 419124 103 + . . scaffold1362 TRF Tandem_Repeat 425340 425367 56 + . . scaffold1362 WUBlastX LINE_RTE-X 426652 426891 78 - . . scaffold1362 WUBlastX LINE_RTE-X 426652 426798 108 - . . scaffold1362 WUBlastX LINE_RTE-X 426655 427026 39 - . . scaffold1362 WUBlastX LINE_L1-Tx1 427454 427531 20 - . . scaffold1362 WUBlastX LINE_L2 427510 427731 70 - . . scaffold1362 TRF Tandem_Repeat 443257 443363 187 + . . scaffold1362 TRF Tandem_Repeat 445025 445055 62 + . . scaffold1362 TRF Tandem_Repeat 445055 445095 82 + . . scaffold1362 TRF Tandem_Repeat 454939 455788 1122 + . . scaffold1362 TRF Tandem_Repeat 457209 457254 57 + . . scaffold1362 TRF Tandem_Repeat 457212 457253 50 + . . scaffold1362 WUBlastX LTR_Ngaro 461428 461646 129 + . . scaffold1362 TRF Tandem_Repeat 471281 471609 450 + . . scaffold1362 TRF Tandem_Repeat 494222 495280 1571 + . . scaffold1362 WUBlastX DNA_Sola 497000 497113 54 - . . scaffold1362 WUBlastX DNA_Sola 497978 498076 32 - . . scaffold1362 GLEAN promoter 501555 502554 0.999351 + . ID=CGI_10023945; scaffold1362 GLEAN mRNA 501660 502067 1 - . ID=CGI_10023944; scaffold1362 WUBlastX RC_Helitron 501669 502472 51 - . . scaffold1362 WUBlastX RC_Helitron 501855 502433 177 - . . scaffold1362 GLEAN promoter 502068 503067 1 - . ID=CGI_10023944; scaffold1362 GLEAN mRNA 502555 508195 0.999351 + . ID=CGI_10023945; scaffold1362 TRF Tandem_Repeat 514414 514447 59 + . . scaffold1362 TRF Tandem_Repeat 516329 516376 96 + . . scaffold1362 TRF Tandem_Repeat 520167 520234 127 + . . scaffold1362 TRF Tandem_Repeat 524493 524526 50 + . . scaffold1362 WUBlastX DNA_hAT-hATw 524901 525350 165 - . . scaffold1362 WUBlastX DNA_hAT-hATw 524937 525449 101 - . . scaffold1362 WUBlastX DNA_hAT-hATw 525548 526513 40 - . . scaffold1362 WUBlastX DNA_hAT-hATw 525551 526366 139 - . . scaffold1362 WUBlastX LTR_Ngaro 533835 534110 143 - . . scaffold1362 WUBlastX LTR_Ngaro 534268 534846 55 - . . scaffold1362 WUBlastX LTR_Ngaro 534424 534852 235 - . . scaffold1362 WUBlastX LTR_Ngaro 534499 534846 268 - . . scaffold1362 WUBlastX LTR_Ngaro 534837 535595 446 - . . scaffold1362 WUBlastX LTR_Ngaro 535884 536078 49 - . . scaffold1362 WUBlastX LTR_Ngaro 536051 536221 29 - . . scaffold1362 WUBlastX LTR_Ngaro 545669 545824 122 - . . scaffold1362 WUBlastX LTR_Ngaro 545820 546410 114 - . . scaffold1362 WUBlastX LTR_Ngaro 546512 547444 605 - . . scaffold1362 WUBlastX LTR_Ngaro 548380 548436 30 - . . scaffold1362 WUBlastX LTR_Ngaro 548389 548505 32 - . . scaffold1362 WUBlastX LTR_Ngaro 548703 549089 134 - . . scaffold1362 WUBlastX LTR_Ngaro 548718 549263 107 - . . scaffold1362 TRF Tandem_Repeat 558833 558897 58 + . . scaffold1362 WUBlastX LTR_Ngaro 561154 561882 192 - . . scaffold1362 WUBlastX LTR_Ngaro 562019 562501 225 - . . scaffold1362 WUBlastX LTR_Ngaro 562423 563562 700 - . . scaffold1362 WUBlastX LTR_Ngaro 562423 563814 640 - . . scaffold1362 WUBlastX LINE_RTE-X 565136 565240 25 + . . scaffold1362 WUBlastX LINE_RTE-X 565157 565240 38 + . . scaffold1362 WUBlastX LINE_RTE-X 565508 565738 25 + . . scaffold1362 GLEAN mRNA 572276 574419 0.938876 - . ID=CGI_10023946; scaffold1362 WUBlastX DNA_IS4EU 572375 572548 65 - . . scaffold1362 WUBlastX DNA_Kolobok-IS4 572964 573455 41 - . . scaffold1362 WUBlastX DNA_IS4EU 572964 573362 64 - . . scaffold1362 GLEAN promoter 574420 575419 0.938876 - . ID=CGI_10023946; scaffold1362 WUBlastX LINE_L1 582108 582215 59 - . . scaffold1362 WUBlastX LINE_L1-Tx1 582129 582242 47 - . . scaffold1362 WUBlastX LINE_L1-Tx1 582524 582697 21 - . . scaffold1362 WUBlastX LINE_L1-Tx1 582555 582623 33 - . . scaffold1362 WUBlastX LINE_L1-Tx1 582641 582700 37 - . . scaffold1362 WUBlastX LINE_L1 582688 582780 26 - . . scaffold1362 WUBlastX DNA_TcMar-Marin 583937 584335 237 - . . scaffold1362 GLEAN mRNA 587546 595826 0.592228 - . ID=CGI_10023947; scaffold1362 TRF Tandem_Repeat 590171 590196 52 + . . scaffold1362 GLEAN promoter 595827 596826 0.592228 - . ID=CGI_10023947; scaffold1362 GLEAN mRNA 596653 596988 0.591996 - . ID=CGI_10023948; scaffold1362 GLEAN promoter 596989 597988 0.591996 - . ID=CGI_10023948; scaffold1362 TRF Tandem_Repeat 598204 598228 50 + . . scaffold1362 GLEAN promoter 600989 601988 0.544851 + . ID=CGI_10023949; scaffold1362 GLEAN mRNA 601989 615985 0.544851 + . ID=CGI_10023949; scaffold1362 TRF Tandem_Repeat 602403 602431 58 + . . scaffold1362 TRF Tandem_Repeat 604106 604146 82 + . . scaffold1362 TRF Tandem_Repeat 607821 607991 193 + . . scaffold1362 TRF Tandem_Repeat 607825 607990 113 + . . scaffold1362 TRF Tandem_Repeat 607990 608126 103 + . . scaffold1362 TRF Tandem_Repeat 608012 608139 85 + . . scaffold1362 GLEAN mRNA 611483 616770 1 - . ID=CGI_10023950; scaffold1362 TRF Tandem_Repeat 613208 613245 58 + . . scaffold1362 GLEAN promoter 616771 617770 1 - . ID=CGI_10023950; scaffold1362 GLEAN mRNA 620620 621905 0.999846 - . ID=CGI_10023951; scaffold1362 GLEAN promoter 621906 622905 0.999846 - . ID=CGI_10023951; scaffold1362 GLEAN mRNA 622281 624843 0.999846 - . ID=CGI_10023952; scaffold1362 TRF Tandem_Repeat 622619 622858 408 + . . scaffold1362 GLEAN promoter 624844 625843 0.999846 - . ID=CGI_10023952; scaffold1362 GLEAN mRNA 642322 674075 0.999624 - . ID=CGI_10023953; scaffold1362 GLEAN promoter 674076 675075 0.999624 - . ID=CGI_10023953; scaffold1362 TRF Tandem_Repeat 675608 675645 76 + . . scaffold1362 TRF Tandem_Repeat 678756 678806 52 + . . scaffold1362 TRF Tandem_Repeat 679310 679367 116 + . . scaffold1362 TRF Tandem_Repeat 686901 687018 96 + . . scaffold1362 GLEAN mRNA 691736 715477 0.999895 - . ID=CGI_10023954; scaffold1362 WUBlastX LINE_RTE-X 698043 698309 24 - . . scaffold1362 WUBlastX LINE_RTE-X 698106 698309 75 - . . scaffold1362 WUBlastX LINE_RTE-X 698354 698794 22 - . . scaffold1362 WUBlastX LINE_RTE-X 698681 698794 33 - . . scaffold1362 TRF Tandem_Repeat 700911 700938 56 + . . scaffold1362 GLEAN promoter 715478 716477 0.999895 - . ID=CGI_10023954; scaffold1362 TRF Tandem_Repeat 718244 718288 90 + . . scaffold1362 GLEAN mRNA 723150 730221 0.777732 - . ID=CGI_10023955; scaffold1362 GLEAN promoter 730222 731221 0.777732 - . ID=CGI_10023955; scaffold1362 TRF Tandem_Repeat 733408 733479 135 + . . scaffold1362 GLEAN mRNA 738469 742315 0.999571 - . ID=CGI_10023956; scaffold1362 GLEAN promoter 742316 743315 0.999571 - . ID=CGI_10023956; scaffold1362 GLEAN promoter 743274 744273 1 + . ID=CGI_10023957; scaffold1362 GLEAN mRNA 744274 745518 1 + . ID=CGI_10023957; scaffold1362 GLEAN promoter 748422 749421 0.990769 + . ID=CGI_10023958; scaffold1362 GLEAN mRNA 749422 756477 0.990769 + . ID=CGI_10023958; scaffold1362 GLEAN promoter 757623 758622 1 + . ID=CGI_10023959; scaffold1362 GLEAN mRNA 758623 760203 1 + . ID=CGI_10023959; scaffold1362 GLEAN mRNA 763275 765179 1 - . ID=CGI_10023960; scaffold1362 GLEAN promoter 765180 766179 1 - . ID=CGI_10023960; scaffold1362 GLEAN mRNA 765402 771059 0.847546 - . ID=CGI_10023961; scaffold1362 GLEAN promoter 771060 772059 0.847546 - . ID=CGI_10023961; scaffold1362 TRF Tandem_Repeat 771108 771132 50 + . . scaffold1362 TRF Tandem_Repeat 773364 773474 106 + . . scaffold1362 TRF Tandem_Repeat 773364 773467 101 + . . scaffold1362 TRF Tandem_Repeat 773365 773466 118 + . . scaffold1362 TRF Tandem_Repeat 773366 773465 109 + . . scaffold1362 TRF Tandem_Repeat 774253 774664 445 + . . scaffold1362 TRF Tandem_Repeat 774253 774676 496 + . . scaffold1362 TRF Tandem_Repeat 782720 783010 392 + . . scaffold1362 GLEAN promoter 795383 796382 0.933506 + . ID=CGI_10023962; scaffold1362 GLEAN mRNA 796383 802516 0.933506 + . ID=CGI_10023962; scaffold1362 TRF Tandem_Repeat 796951 796992 84 + . . scaffold1362 TRF Tandem_Repeat 800175 800225 102 + . . scaffold1362 GLEAN promoter 802840 803839 1 + . ID=CGI_10023963; scaffold1362 GLEAN mRNA 803840 805341 1 + . ID=CGI_10023963; scaffold1362 GLEAN mRNA 805413 806249 0.268072 - . ID=CGI_10023964; scaffold1362 GLEAN promoter 806250 807249 0.268072 - . ID=CGI_10023964; scaffold1362 TRF Tandem_Repeat 821403 821435 66 + . . scaffold1362 GLEAN promoter 827904 828903 0.615405 + . ID=CGI_10023966; scaffold1362 GLEAN mRNA 828904 842521 0.615405 + . ID=CGI_10023966; scaffold1362 TRF Tandem_Repeat 832190 832219 60 + . . scaffold1362 GLEAN mRNA 841973 847773 0.909071 - . ID=CGI_10023967; scaffold1362 GLEAN promoter 847774 848773 0.909071 - . ID=CGI_10023967; scaffold1362 TRF Tandem_Repeat 852223 852263 64 + . . scaffold1362 TRF Tandem_Repeat 852613 852683 135 + . . scaffold1362 GLEAN promoter 857575 858574 0.335196 + . ID=CGI_10023968; scaffold1362 GLEAN mRNA 858575 876239 0.335196 + . ID=CGI_10023968; scaffold1362 TRF Tandem_Repeat 867768 869962 3195 + . . scaffold1362 TRF Tandem_Repeat 867768 869962 3059 + . . scaffold1362 GLEAN mRNA 870591 873105 0.650836 - . ID=CGI_10023969; scaffold1362 GLEAN promoter 873106 874105 0.650836 - . ID=CGI_10023969; scaffold1362 TRF Tandem_Repeat 884958 884998 57 + . . scaffold1363 GLEAN promoter 1 480 0.54104 + . ID=CGI_10000748; scaffold1363 GLEAN mRNA 481 9247 0.54104 + . ID=CGI_10000748; scaffold1364 GLEAN promoter 4315 5314 1 + . ID=CGI_10001796; scaffold1364 GLEAN mRNA 5315 6556 1 + . ID=CGI_10001796; scaffold1364 GLEAN promoter 14743 15742 0.999985 + . ID=CGI_10001797; scaffold1364 GLEAN mRNA 15743 30439 0.999985 + . ID=CGI_10001797; scaffold1364 GLEAN mRNA 30740 31518 1 - . ID=CGI_10001798; scaffold1364 GLEAN promoter 31519 31602 1 - . ID=CGI_10001798; scaffold1366 GLEAN mRNA 8056 14110 0.873566 - . ID=CGI_10012280; scaffold1366 GLEAN promoter 12626 13625 0.618241 + . ID=CGI_10012281; scaffold1366 TRF Tandem_Repeat 13333 13586 355 + . . scaffold1366 GLEAN mRNA 13626 14027 0.618241 + . ID=CGI_10012281; scaffold1366 GLEAN promoter 14111 15110 0.873566 - . ID=CGI_10012280; scaffold1366 TRF Tandem_Repeat 15984 16035 104 + . . scaffold1366 GLEAN mRNA 17393 17731 1 - . ID=CGI_10012282; scaffold1366 GLEAN promoter 17732 18731 1 - . ID=CGI_10012282; scaffold1366 WUBlastX DNA_Crypton 26354 26734 62 + . . scaffold1366 WUBlastX DNA_Crypton 27285 27638 94 + . . scaffold1366 GLEAN promoter 29390 30389 0.743724 + . ID=CGI_10012283; scaffold1366 TRF Tandem_Repeat 29532 29595 83 + . . scaffold1366 GLEAN mRNA 30390 31955 0.743724 + . ID=CGI_10012283; scaffold1366 WUBlastX LTR_Gypsy 31524 32135 53 + . . scaffold1366 WUBlastX LTR_Gypsy 31635 32252 50 + . . scaffold1366 WUBlastX LTR_Copia 32025 32297 47 + . . scaffold1366 GLEAN promoter 32187 33186 0.553203 + . ID=CGI_10012285; scaffold1366 GLEAN mRNA 32366 55197 0.995905 - . ID=CGI_10012284; scaffold1366 GLEAN mRNA 33187 43502 0.553203 + . ID=CGI_10012285; scaffold1366 TRF Tandem_Repeat 46332 46388 114 + . . scaffold1366 TRF Tandem_Repeat 48053 48329 314 + . . scaffold1366 TRF Tandem_Repeat 48339 48879 645 + . . scaffold1366 TRF Tandem_Repeat 49041 49317 314 + . . scaffold1366 TRF Tandem_Repeat 49327 50908 2239 + . . scaffold1366 GLEAN promoter 55198 56197 0.995905 - . ID=CGI_10012284; scaffold1366 GLEAN promoter 55257 56256 0.999676 + . ID=CGI_10012286; scaffold1366 GLEAN mRNA 56257 58444 0.999676 + . ID=CGI_10012286; scaffold1366 GLEAN promoter 61693 62692 0.499838 + . ID=CGI_10012287; scaffold1366 TRF Tandem_Repeat 62384 62496 187 + . . scaffold1366 GLEAN mRNA 62693 68631 0.499838 + . ID=CGI_10012287; scaffold1366 GLEAN mRNA 64442 65608 0.999661 - . ID=CGI_10012288; scaffold1366 GLEAN promoter 65609 66608 0.999661 - . ID=CGI_10012288; scaffold1366 TRF Tandem_Repeat 67347 67382 54 + . . scaffold1366 TRF Tandem_Repeat 67607 67662 67 + . . scaffold1366 TRF Tandem_Repeat 67607 67662 96 + . . scaffold1366 TRF Tandem_Repeat 67610 67650 55 + . . scaffold1366 TRF Tandem_Repeat 71063 71098 72 + . . scaffold1366 GLEAN promoter 72729 73728 0.999999 + . ID=CGI_10012289; scaffold1366 GLEAN mRNA 73729 84667 0.999999 + . ID=CGI_10012289; scaffold1366 TRF Tandem_Repeat 82838 83355 778 + . . scaffold1366 GLEAN mRNA 85242 90157 0.999624 - . ID=CGI_10012290; scaffold1366 TRF Tandem_Repeat 87911 87998 115 + . . scaffold1366 GLEAN promoter 90158 91157 0.999624 - . ID=CGI_10012290; scaffold1366 TRF Tandem_Repeat 90467 90532 123 + . . scaffold1366 TRF Tandem_Repeat 93947 94323 513 + . . scaffold1366 TRF Tandem_Repeat 94804 94876 128 + . . scaffold1366 TRF Tandem_Repeat 94941 95014 51 + . . scaffold1366 TRF Tandem_Repeat 94949 95014 89 + . . scaffold1366 TRF Tandem_Repeat 95110 95202 55 + . . scaffold1366 TRF Tandem_Repeat 95112 95157 74 + . . scaffold1366 TRF Tandem_Repeat 107273 107412 185 + . . scaffold1366 GLEAN promoter 108000 108999 0.999351 + . ID=CGI_10012291; scaffold1366 GLEAN mRNA 109000 119073 0.999351 + . ID=CGI_10012291; scaffold1366 WUBlastX LINE_RTE-BovB 109453 109809 39 - . . scaffold1366 TRF Tandem_Repeat 115373 115446 134 + . . scaffold1366 TRF Tandem_Repeat 118519 118885 322 + . . scaffold1366 GLEAN mRNA 126212 128917 1 - . ID=CGI_10012292; scaffold1366 GLEAN promoter 128918 129917 1 - . ID=CGI_10012292; scaffold1366 TRF Tandem_Repeat 130770 130897 238 + . . scaffold1366 TRF Tandem_Repeat 131786 131846 104 + . . scaffold1366 TRF Tandem_Repeat 133414 133458 90 + . . scaffold1366 GLEAN mRNA 134919 140492 0.999572 - . ID=CGI_10012293; scaffold1366 WUBlastX LINE_RTE-X 137450 137752 29 - . . scaffold1366 WUBlastX LINE_RTE-X 137558 137770 68 - . . scaffold1366 GLEAN promoter 140493 141492 0.999572 - . ID=CGI_10012293; scaffold1366 WUBlastX LINE_RTE-X 140827 141117 91 - . . scaffold1366 WUBlastX LINE_RTE-X 140956 141105 93 - . . scaffold1366 GLEAN promoter 148453 149452 0.999067 + . ID=CGI_10012294; scaffold1366 GLEAN mRNA 149453 157718 0.999067 + . ID=CGI_10012294; scaffold1366 GLEAN mRNA 158751 162132 0.938848 - . ID=CGI_10012295; scaffold1366 GLEAN promoter 162133 163132 0.938848 - . ID=CGI_10012295; scaffold1366 GLEAN promoter 162589 163588 0.942246 + . ID=CGI_10012296; scaffold1366 GLEAN mRNA 163589 176739 0.942246 + . ID=CGI_10012296; scaffold1366 WUBlastX DNA_Crypton 163773 163982 46 - . . scaffold1366 WUBlastX DNA_Crypton 163988 164344 122 - . . scaffold1366 TRF Tandem_Repeat 174417 174445 58 + . . scaffold1366 GLEAN mRNA 176880 180379 1 - . ID=CGI_10012297; scaffold1366 TRF Tandem_Repeat 179619 180276 432 + . . scaffold1366 TRF Tandem_Repeat 179732 180261 351 + . . scaffold1366 TRF Tandem_Repeat 179977 180269 320 + . . scaffold1366 GLEAN promoter 180380 181379 1 - . ID=CGI_10012297; scaffold1366 TRF Tandem_Repeat 182940 182964 50 + . . scaffold1366 TRF Tandem_Repeat 190797 191316 659 + . . scaffold1366 GLEAN mRNA 191708 197634 0.734544 - . ID=CGI_10012298; scaffold1366 TRF Tandem_Repeat 197388 197435 51 + . . scaffold1366 GLEAN promoter 197635 198634 0.734544 - . ID=CGI_10012298; scaffold1366 GLEAN mRNA 200479 203668 0.580489 - . ID=CGI_10012299; scaffold1366 GLEAN promoter 203669 204668 0.580489 - . ID=CGI_10012299; scaffold1366 TRF Tandem_Repeat 207957 208005 98 + . . scaffold1366 TRF Tandem_Repeat 209003 209047 90 + . . scaffold1366 GLEAN mRNA 209696 213264 1 - . ID=CGI_10012300; scaffold1366 GLEAN promoter 213265 214264 1 - . ID=CGI_10012300; scaffold1366 GLEAN mRNA 222961 224450 1 - . ID=CGI_10012301; scaffold1366 GLEAN promoter 224451 225450 1 - . ID=CGI_10012301; scaffold1366 GLEAN mRNA 224781 226229 1 - . ID=CGI_10012302; scaffold1366 GLEAN promoter 226230 227229 1 - . ID=CGI_10012302; scaffold1366 GLEAN mRNA 226934 234486 0.999879 - . ID=CGI_10012303; scaffold1366 TRF Tandem_Repeat 231286 231337 104 + . . scaffold1366 GLEAN promoter 234487 235486 0.999879 - . ID=CGI_10012303; scaffold1366 TRF Tandem_Repeat 238013 239072 1553 + . . scaffold1366 TRF Tandem_Repeat 238013 239072 1553 + . . scaffold1366 TRF Tandem_Repeat 246214 246482 230 + . . scaffold1366 GLEAN mRNA 252170 270391 0.937316 - . ID=CGI_10012304; scaffold1366 TRF Tandem_Repeat 252807 252832 52 + . . scaffold1366 TRF Tandem_Repeat 255055 255447 535 + . . scaffold1366 GLEAN promoter 270392 271391 0.937316 - . ID=CGI_10012304; scaffold1366 TRF Tandem_Repeat 273043 273105 126 + . . scaffold1366 TRF Tandem_Repeat 300077 300235 88 + . . scaffold1366 TRF Tandem_Repeat 301380 301424 90 + . . scaffold1366 TRF Tandem_Repeat 301422 301460 78 + . . scaffold1366 GLEAN mRNA 303503 308082 1 - . ID=CGI_10012305; scaffold1366 GLEAN promoter 308083 309082 1 - . ID=CGI_10012305; scaffold1367 GLEAN mRNA 2698 5874 0.998226 - . ID=CGI_10005499; scaffold1367 GLEAN promoter 5875 6874 0.998226 - . ID=CGI_10005499; scaffold1367 WUBlastX DNA_Sola 70766 71809 325 + . . scaffold1367 TRF Tandem_Repeat 79928 79995 136 + . . scaffold1367 TRF Tandem_Repeat 81297 81339 54 + . . scaffold1367 WUBlastX DNA_TcMar-Tc1 89683 90249 113 + . . scaffold1367 WUBlastX DNA_TcMar-Tc1 90284 90691 174 + . . scaffold1367 WUBlastX DNA_TcMar-Tc1 90608 90706 24 + . . scaffold1367 TRF Tandem_Repeat 104633 104679 76 + . . scaffold1367 TRF Tandem_Repeat 106268 106307 80 + . . scaffold1367 GLEAN mRNA 110543 127160 0.879341 - . ID=CGI_10005500; scaffold1367 GLEAN promoter 127161 128160 0.879341 - . ID=CGI_10005500; scaffold1368 GLEAN promoter 325 1324 1 + . ID=CGI_10002236; scaffold1368 GLEAN mRNA 1325 12899 1 + . ID=CGI_10002236; scaffold1368 TRF Tandem_Repeat 12650 12700 93 + . . scaffold1368 GLEAN mRNA 18332 20059 1 - . ID=CGI_10002237; scaffold1368 GLEAN promoter 20060 21059 1 - . ID=CGI_10002237; scaffold1368 TRF Tandem_Repeat 30678 30718 82 + . . scaffold1368 GLEAN mRNA 31913 33640 1 - . ID=CGI_10002238; scaffold1368 WUBlastX LINE_L2 32666 33397 26 - . . scaffold1368 GLEAN promoter 33641 34640 1 - . ID=CGI_10002238; scaffold1368 GLEAN promoter 36763 37762 0.999661 + . ID=CGI_10002239; scaffold1368 GLEAN mRNA 37763 39493 0.999661 + . ID=CGI_10002239; scaffold1369 WUBlastX LINE_L1 2370 2705 40 - . . scaffold1369 WUBlastX LINE_L1-Tx1 2442 2696 78 - . . scaffold1369 WUBlastX LINE_L1-Tx1 2513 2746 54 - . . scaffold1369 WUBlastX LINE_L1-Tx1 3819 4037 40 - . . scaffold1369 WUBlastX LTR_Gypsy 14014 14136 57 - . . scaffold1369 GLEAN promoter 24254 25253 1 + . ID=CGI_10002715; scaffold1369 GLEAN mRNA 25254 31595 1 + . ID=CGI_10002715; scaffold1369 TRF Tandem_Repeat 36127 36175 98 + . . scaffold137 GLEAN promoter 1 652 1 + . ID=CGI_10000425; scaffold137 GLEAN mRNA 653 5187 1 + . ID=CGI_10000425; scaffold1370 GLEAN mRNA 642 1238 1 - . ID=CGI_10000165; scaffold1370 GLEAN promoter 1239 2238 1 - . ID=CGI_10000165; scaffold1370 GLEAN mRNA 1243 2469 0.999414 - . ID=CGI_10000166; scaffold1370 GLEAN promoter 2470 2506 0.999414 - . ID=CGI_10000166; scaffold1371 WUBlastX LINE_L2 7440 7616 58 - . . scaffold1371 WUBlastX LINE_CR1-L2 7643 7714 39 - . . scaffold1371 WUBlastX LINE_CR1 7716 8039 95 - . . scaffold1371 WUBlastX LINE_L2 7773 8327 233 - . . scaffold1371 GLEAN mRNA 13026 14755 0.999676 - . ID=CGI_10005454; scaffold1371 GLEAN promoter 14756 15755 0.999676 - . ID=CGI_10005454; scaffold1371 GLEAN promoter 27504 28503 0.999999 + . ID=CGI_10005455; scaffold1371 TRF Tandem_Repeat 27776 27859 105 + . . scaffold1371 GLEAN mRNA 28504 33195 0.999999 + . ID=CGI_10005455; scaffold1371 TRF Tandem_Repeat 28977 29045 79 + . . scaffold1371 TRF Tandem_Repeat 29688 29923 429 + . . scaffold1371 GLEAN promoter 33480 34479 0.999999 + . ID=CGI_10005456; scaffold1371 GLEAN mRNA 34480 37747 0.999999 + . ID=CGI_10005456; scaffold1371 TRF Tandem_Repeat 34544 34650 178 + . . scaffold1371 TRF Tandem_Repeat 34966 35578 626 + . . scaffold1371 GLEAN promoter 37386 38385 1 + . ID=CGI_10005457; scaffold1371 GLEAN mRNA 38386 51399 1 + . ID=CGI_10005457; scaffold1371 TRF Tandem_Repeat 45661 45938 502 + . . scaffold1371 TRF Tandem_Repeat 55061 55090 60 + . . scaffold1371 TRF Tandem_Repeat 55794 55829 54 + . . scaffold1371 WUBlastX LINE_RTE-X 57627 57665 25 - . . scaffold1371 WUBlastX LINE_R2 57671 58225 44 - . . scaffold1371 WUBlastX LINE_RTE-X 57827 58219 101 - . . scaffold1371 TRF Tandem_Repeat 83343 84156 1182 + . . scaffold1371 TRF Tandem_Repeat 84192 84409 61 + . . scaffold1371 TRF Tandem_Repeat 85965 85993 58 + . . scaffold1371 TRF Tandem_Repeat 86182 86256 123 + . . scaffold1371 TRF Tandem_Repeat 86995 87049 56 + . . scaffold1371 TRF Tandem_Repeat 92615 92666 104 + . . scaffold1371 TRF Tandem_Repeat 104193 104246 54 + . . scaffold1371 WUBlastX LTR_Gypsy 104800 105288 71 + . . scaffold1371 WUBlastX LTR_Gypsy 104935 105288 100 + . . scaffold1371 TRF Tandem_Repeat 123775 123853 52 + . . scaffold1371 WUBlastX DNA_IS4EU 126608 127411 243 - . . scaffold1372 WUBlastX DNA_TcMar-Tc1 13516 13599 20 + . . scaffold1372 WUBlastX DNA_TcMar-Tc1 13576 13995 141 + . . scaffold1372 WUBlastX DNA_TcMar-Tc1 13672 13995 162 + . . scaffold1372 GLEAN mRNA 19272 22107 0.797819 - . ID=CGI_10015659; scaffold1372 GLEAN promoter 22108 23107 0.797819 - . ID=CGI_10015659; scaffold1372 TRF Tandem_Repeat 22592 22616 50 + . . scaffold1372 TRF Tandem_Repeat 24876 24941 105 + . . scaffold1372 GLEAN mRNA 26632 27988 0.999826 - . ID=CGI_10015660; scaffold1372 GLEAN promoter 27989 28988 0.999826 - . ID=CGI_10015660; scaffold1372 GLEAN promoter 48739 49738 0.635284 + . ID=CGI_10015661; scaffold1372 GLEAN mRNA 49739 64867 0.635284 + . ID=CGI_10015661; scaffold1372 TRF Tandem_Repeat 52500 52583 168 + . . scaffold1372 TRF Tandem_Repeat 53903 53937 52 + . . scaffold1372 GLEAN mRNA 65929 69396 0.720628 - . ID=CGI_10015662; scaffold1372 GLEAN promoter 69397 70396 0.720628 - . ID=CGI_10015662; scaffold1372 TRF Tandem_Repeat 69916 69949 59 + . . scaffold1372 TRF Tandem_Repeat 70062 70123 70 + . . scaffold1372 TRF Tandem_Repeat 71848 71892 54 + . . scaffold1372 TRF Tandem_Repeat 72019 72089 99 + . . scaffold1372 TRF Tandem_Repeat 73017 73084 118 + . . scaffold1372 WUBlastX DNA_hAT-Tip100 75669 75926 167 + . . scaffold1372 TRF Tandem_Repeat 87823 87872 55 + . . scaffold1372 TRF Tandem_Repeat 88216 88270 83 + . . scaffold1372 TRF Tandem_Repeat 89724 89777 90 + . . scaffold1372 TRF Tandem_Repeat 96767 96873 142 + . . scaffold1372 TRF Tandem_Repeat 103871 104165 260 + . . scaffold1372 TRF Tandem_Repeat 103874 104204 137 + . . scaffold1372 TRF Tandem_Repeat 104318 104458 219 + . . scaffold1372 TRF Tandem_Repeat 105612 105775 301 + . . scaffold1372 GLEAN mRNA 106818 117508 0.255831 - . ID=CGI_10015663; scaffold1372 WUBlastX LINE_RTE-X 109453 109830 62 + . . scaffold1372 WUBlastX LINE_RTE-X 109826 110110 92 + . . scaffold1372 WUBlastX LINE_RTE-X 109844 110014 97 + . . scaffold1372 TRF Tandem_Repeat 110419 110443 50 + . . scaffold1372 GLEAN promoter 117509 118508 0.255831 - . ID=CGI_10015663; scaffold1372 TRF Tandem_Repeat 119588 119646 109 + . . scaffold1372 TRF Tandem_Repeat 123140 123188 98 + . . scaffold1372 TRF Tandem_Repeat 129319 129453 92 + . . scaffold1372 TRF Tandem_Repeat 129333 129478 141 + . . scaffold1372 TRF Tandem_Repeat 129380 129468 53 + . . scaffold1372 WUBlastX LINE_CR1-L2 131133 131558 121 + . . scaffold1372 WUBlastX LINE_L2 131289 131675 42 + . . scaffold1372 WUBlastX LINE_Jockey 131367 131594 42 + . . scaffold1372 GLEAN mRNA 133072 155445 0.712488 - . ID=CGI_10015664; scaffold1372 GLEAN promoter 155446 156445 0.712488 - . ID=CGI_10015664; scaffold1372 TRF Tandem_Repeat 170454 170485 55 + . . scaffold1372 WUBlastX LINE_RTE-X 172501 172926 56 + . . scaffold1372 WUBlastX LINE_RTE-X 172612 172932 78 + . . scaffold1372 WUBlastX LINE_RTE-X 172741 172959 85 + . . scaffold1372 WUBlastX LINE_RTE-X 173078 173272 28 + . . scaffold1372 WUBlastX LINE_RTE-X 173078 173311 24 + . . scaffold1372 WUBlastX LINE_RTE-X 173162 173272 44 + . . scaffold1372 TRF Tandem_Repeat 180761 180802 84 + . . scaffold1372 GLEAN promoter 182296 183295 0.998901 + . ID=CGI_10015665; scaffold1372 GLEAN mRNA 183296 187646 0.998901 + . ID=CGI_10015665; scaffold1372 TRF Tandem_Repeat 192780 192904 94 + . . scaffold1372 TRF Tandem_Repeat 194154 194230 55 + . . scaffold1372 TRF Tandem_Repeat 194156 194229 57 + . . scaffold1372 GLEAN promoter 200385 201384 0.568164 + . ID=CGI_10015666; scaffold1372 GLEAN mRNA 201385 266403 0.568164 + . ID=CGI_10015666; scaffold1372 GLEAN mRNA 269337 291204 0.998088 - . ID=CGI_10015667; scaffold1372 TRF Tandem_Repeat 270233 270600 576 + . . scaffold1372 TRF Tandem_Repeat 274345 274395 102 + . . scaffold1372 TRF Tandem_Repeat 274715 274755 73 + . . scaffold1372 GLEAN promoter 291205 292204 0.998088 - . ID=CGI_10015667; scaffold1372 GLEAN mRNA 292423 305798 0.71724 - . ID=CGI_10015668; scaffold1372 TRF Tandem_Repeat 293540 293585 92 + . . scaffold1372 TRF Tandem_Repeat 294685 294750 132 + . . scaffold1372 TRF Tandem_Repeat 305266 305301 72 + . . scaffold1372 GLEAN promoter 305799 306798 0.71724 - . ID=CGI_10015668; scaffold1372 TRF Tandem_Repeat 309134 309170 74 + . . scaffold1372 TRF Tandem_Repeat 315389 315753 345 + . . scaffold1372 WUBlastX LINE_RTE-X 317334 317990 86 - . . scaffold1372 WUBlastX LINE_RTE-X 317499 317966 126 - . . scaffold1372 TRF Tandem_Repeat 319388 319413 52 + . . scaffold1372 TRF Tandem_Repeat 326009 326055 94 + . . scaffold1372 GLEAN promoter 336236 337235 0.994485 + . ID=CGI_10015669; scaffold1372 GLEAN mRNA 337236 344759 0.994485 + . ID=CGI_10015669; scaffold1372 TRF Tandem_Repeat 342526 342579 108 + . . scaffold1372 TRF Tandem_Repeat 344448 344483 72 + . . scaffold1372 GLEAN promoter 344634 345633 0.58791 + . ID=CGI_10015670; scaffold1372 GLEAN mRNA 345634 353825 0.58791 + . ID=CGI_10015670; scaffold1372 TRF Tandem_Repeat 347029 347088 84 + . . scaffold1372 TRF Tandem_Repeat 347034 347095 88 + . . scaffold1372 TRF Tandem_Repeat 347119 347907 1180 + . . scaffold1372 TRF Tandem_Repeat 350567 350792 196 + . . scaffold1372 TRF Tandem_Repeat 351040 351227 209 + . . scaffold1372 TRF Tandem_Repeat 358003 358038 72 + . . scaffold1372 TRF Tandem_Repeat 364581 364624 54 + . . scaffold1372 TRF Tandem_Repeat 364581 364632 50 + . . scaffold1372 GLEAN mRNA 364735 372913 0.631038 - . ID=CGI_10015671; scaffold1372 TRF Tandem_Repeat 370978 371062 170 + . . scaffold1372 GLEAN promoter 371225 372224 0.527898 + . ID=CGI_10015672; scaffold1372 GLEAN mRNA 372225 373382 0.527898 + . ID=CGI_10015672; scaffold1372 GLEAN promoter 372914 373913 0.631038 - . ID=CGI_10015671; scaffold1372 TRF Tandem_Repeat 374329 374473 82 + . . scaffold1372 TRF Tandem_Repeat 374371 374478 153 + . . scaffold1372 TRF Tandem_Repeat 374375 374467 90 + . . scaffold1372 TRF Tandem_Repeat 374376 374478 129 + . . scaffold1372 WUBlastX DNA_Harbinger 375594 375953 64 + . . scaffold1372 WUBlastX DNA_Harbinger 375699 375959 71 + . . scaffold1372 WUBlastX DNA_Harbinger 376031 376177 134 + . . scaffold1372 WUBlastX DNA_Harbinger 376043 376207 42 + . . scaffold1372 WUBlastX DNA_Harbinger 376305 376724 87 - . . scaffold1372 WUBlastX DNA_Harbinger 376469 376780 37 - . . scaffold1372 TRF Tandem_Repeat 377061 377111 102 + . . scaffold1372 GLEAN promoter 380566 381565 0.780733 + . ID=CGI_10015673; scaffold1372 GLEAN mRNA 381566 383299 0.780733 + . ID=CGI_10015673; scaffold1372 WUBlastX RC_Helitron 400615 406170 2876 - . . scaffold1372 WUBlastX RC_Helitron 406039 407124 161 - . . scaffold1372 TRF Tandem_Repeat 416730 416767 67 + . . scaffold1372 GLEAN promoter 422782 423781 0.771599 + . ID=CGI_10015674; scaffold1372 GLEAN mRNA 423782 425509 0.771599 + . ID=CGI_10015674; scaffold1372 GLEAN promoter 428304 429303 0.82852 + . ID=CGI_10015675; scaffold1372 GLEAN mRNA 429304 431037 0.82852 + . ID=CGI_10015675; scaffold1372 WUBlastX LINE_L1 435639 436601 113 - . . scaffold1372 WUBlastX LINE_L1-Tx1 436209 436610 143 - . . scaffold1373 GLEAN mRNA 600 7221 1 - . ID=CGI_10007903; scaffold1373 WUBlastX LINE_RTE-X 1285 1884 147 + . . scaffold1373 WUBlastX LINE_RTE-X 1297 2019 107 + . . scaffold1373 TRF Tandem_Repeat 4984 5246 384 + . . scaffold1373 GLEAN promoter 7222 8221 1 - . ID=CGI_10007903; scaffold1373 GLEAN mRNA 14147 30425 0.488375 - . ID=CGI_10007904; scaffold1373 GLEAN promoter 14305 15304 0.999368 + . ID=CGI_10007905; scaffold1373 GLEAN mRNA 15305 23957 0.999368 + . ID=CGI_10007905; scaffold1373 WUBlastX LTR_Pao 20958 22133 1135 + . . scaffold1373 GLEAN promoter 22981 23980 1 + . ID=CGI_10007906; scaffold1373 GLEAN mRNA 23981 28133 1 + . ID=CGI_10007906; scaffold1373 TRF Tandem_Repeat 29613 29682 78 + . . scaffold1373 TRF Tandem_Repeat 29773 29804 55 + . . scaffold1373 TRF Tandem_Repeat 29889 29965 136 + . . scaffold1373 GLEAN promoter 30426 31425 0.488375 - . ID=CGI_10007904; scaffold1373 TRF Tandem_Repeat 32281 33009 1119 + . . scaffold1373 TRF Tandem_Repeat 32281 33012 954 + . . scaffold1373 TRF Tandem_Repeat 38038 38077 80 + . . scaffold1373 TRF Tandem_Repeat 45517 45548 64 + . . scaffold1373 GLEAN promoter 54125 55124 0.996819 + . ID=CGI_10007907; scaffold1373 GLEAN mRNA 55125 68644 0.996819 + . ID=CGI_10007907; scaffold1373 TRF Tandem_Repeat 56110 56146 74 + . . scaffold1373 TRF Tandem_Repeat 61144 61187 88 + . . scaffold1373 TRF Tandem_Repeat 75000 75044 90 + . . scaffold1373 TRF Tandem_Repeat 90014 90395 626 + . . scaffold1373 TRF Tandem_Repeat 91038 92108 758 + . . scaffold1373 TRF Tandem_Repeat 91069 91925 572 + . . scaffold1373 TRF Tandem_Repeat 92111 92454 414 + . . scaffold1373 GLEAN mRNA 93164 101031 0.999392 - . ID=CGI_10007908; scaffold1373 GLEAN promoter 101032 102031 0.999392 - . ID=CGI_10007908; scaffold1373 GLEAN promoter 102034 103033 0.995871 + . ID=CGI_10007909; scaffold1373 GLEAN mRNA 103034 123779 0.995871 + . ID=CGI_10007909; scaffold1373 TRF Tandem_Repeat 106216 106671 736 + . . scaffold1373 TRF Tandem_Repeat 106291 106406 68 + . . scaffold1373 TRF Tandem_Repeat 107805 107890 127 + . . scaffold1373 TRF Tandem_Repeat 107805 107890 145 + . . scaffold1373 TRF Tandem_Repeat 111699 112040 252 + . . scaffold1373 TRF Tandem_Repeat 111771 112071 239 + . . scaffold1373 TRF Tandem_Repeat 114457 114859 533 + . . scaffold1373 WUBlastX DNA_TcMar-Tc1 131587 131838 47 - . . scaffold1373 WUBlastX DNA_TcMar-Tc1 131662 131802 56 - . . scaffold1373 WUBlastX DNA_TcMar-Tc1 131912 132157 31 - . . scaffold1373 WUBlastX DNA_TcMar-Tc1 133323 133409 63 - . . scaffold1373 GLEAN promoter 135954 136953 0.465822 + . ID=CGI_10007910; scaffold1373 GLEAN mRNA 136954 137821 0.465822 + . ID=CGI_10007910; scaffold1373 WUBlastX DNA_hAT-Tip100 137435 137779 101 + . . scaffold1373 GLEAN promoter 139288 140287 0.61817 + . ID=CGI_10007911; scaffold1373 GLEAN mRNA 140288 140494 0.61817 + . ID=CGI_10007911; scaffold1373 GLEAN mRNA 140926 141120 0.999372 - . ID=CGI_10007912; scaffold1373 GLEAN promoter 141121 142120 0.999372 - . ID=CGI_10007912; scaffold1373 WUBlastX DNA_hAT 144327 145298 320 + . . scaffold1373 WUBlastX DNA_hAT-Tip100 145361 145603 27 + . . scaffold1373 WUBlastX DNA_hAT-Tip100 146209 146316 21 + . . scaffold1373 WUBlastX DNA_hAT-Tip100 146239 146631 45 + . . scaffold1373 WUBlastX DNA_hAT-Tip100 146338 146703 75 + . . scaffold1373 WUBlastX DNA_hAT-Tag1 146407 146913 23 + . . scaffold1373 WUBlastX DNA_hAT-Tip100 146425 146673 96 + . . scaffold1373 WUBlastX DNA_hAT-Tip100 146461 146787 44 + . . scaffold1373 TRF Tandem_Repeat 153023 153263 419 + . . scaffold1373 TRF Tandem_Repeat 162270 162355 149 + . . scaffold1373 GLEAN mRNA 164407 174047 0.544675 - . ID=CGI_10007913; scaffold1373 WUBlastX LINE_Penelope 166900 167478 32 - . . scaffold1373 GLEAN promoter 173273 174272 0.993584 + . ID=CGI_10007914; scaffold1373 GLEAN promoter 174048 175047 0.544675 - . ID=CGI_10007913; scaffold1373 GLEAN mRNA 174273 181107 0.993584 + . ID=CGI_10007914; scaffold1373 GLEAN mRNA 183813 185069 0.999999 - . ID=CGI_10007915; scaffold1373 GLEAN promoter 185070 186069 0.999999 - . ID=CGI_10007915; scaffold1373 GLEAN mRNA 185282 185446 0.776794 - . ID=CGI_10007916; scaffold1373 GLEAN promoter 185447 186446 0.776794 - . ID=CGI_10007916; scaffold1373 GLEAN mRNA 185452 189524 0.702385 - . ID=CGI_10007917; scaffold1373 GLEAN promoter 189525 190524 0.702385 - . ID=CGI_10007917; scaffold1374 WUBlastX LTR_Gypsy 7493 7717 61 + . . scaffold1374 TRF Tandem_Repeat 11782 11845 98 + . . scaffold1374 TRF Tandem_Repeat 12793 12871 106 + . . scaffold1374 WUBlastX LINE_RTE-X 15274 15723 107 + . . scaffold1374 WUBlastX LINE_RTE-X 15286 15600 111 + . . scaffold1374 TRF Tandem_Repeat 25360 25409 100 + . . scaffold1374 WUBlastX DNA_Harbinger 33495 33638 68 + . . scaffold1374 TRF Tandem_Repeat 34141 34255 137 + . . scaffold1374 TRF Tandem_Repeat 34141 34255 133 + . . scaffold1374 TRF Tandem_Repeat 34172 34269 83 + . . scaffold1374 WUBlastX LINE_RTE-X 35802 36191 85 - . . scaffold1374 WUBlastX LINE_RTE-X 35931 36191 105 - . . scaffold1374 TRF Tandem_Repeat 40371 40464 72 + . . scaffold1374 TRF Tandem_Repeat 40394 40498 122 + . . scaffold1374 TRF Tandem_Repeat 40394 40498 122 + . . scaffold1374 WUBlastX DNA_Harbinger 40933 41076 68 - . . scaffold1374 GLEAN mRNA 53120 54241 0.965908 - . ID=CGI_10003418; scaffold1374 GLEAN promoter 54242 55241 0.965908 - . ID=CGI_10003418; scaffold1374 TRF Tandem_Repeat 56803 56832 51 + . . scaffold1374 TRF Tandem_Repeat 57580 57604 50 + . . scaffold1374 GLEAN promoter 58001 59000 0.911813 + . ID=CGI_10003419; scaffold1374 TRF Tandem_Repeat 58640 58999 361 + . . scaffold1374 GLEAN mRNA 59001 64557 0.911813 + . ID=CGI_10003419; scaffold1374 TRF Tandem_Repeat 61036 61386 614 + . . scaffold1374 TRF Tandem_Repeat 62273 63043 1114 + . . scaffold1374 TRF Tandem_Repeat 66202 66536 182 + . . scaffold1374 TRF Tandem_Repeat 66317 66526 126 + . . scaffold1374 TRF Tandem_Repeat 71226 71261 63 + . . scaffold1375 GLEAN promoter 3233 4232 1 + . ID=CGI_10003979; scaffold1375 GLEAN mRNA 4233 5216 1 + . ID=CGI_10003979; scaffold1375 GLEAN promoter 10184 11183 1 + . ID=CGI_10003981; scaffold1375 GLEAN mRNA 11184 14017 1 + . ID=CGI_10003981; scaffold1375 WUBlastX LINE_L2 15296 16801 152 + . . scaffold1375 WUBlastX LINE_CR1 15581 16816 800 + . . scaffold1375 WUBlastX LINE_CR1 16795 17838 745 + . . scaffold1375 WUBlastX LINE_L2 18651 19103 348 + . . scaffold1375 TRF Tandem_Repeat 19584 19609 52 + . . scaffold1375 WUBlastX LTR_Pao 20889 21428 457 - . . scaffold1375 WUBlastX LTR_Pao 21430 21516 49 - . . scaffold1375 WUBlastX LTR_Pao 21506 22324 683 - . . scaffold1375 WUBlastX LTR_Pao 22458 23456 783 - . . scaffold1375 WUBlastX LTR_Pao 23431 23811 242 - . . scaffold1375 WUBlastX LTR_Pao 23813 25042 648 - . . scaffold1375 WUBlastX LTR_Pao 25048 25494 227 - . . scaffold1375 WUBlastX LTR_Pao 25613 26230 25 - . . scaffold1375 GLEAN mRNA 34135 39845 0.937918 - . ID=CGI_10003982; scaffold1375 TRF Tandem_Repeat 37318 37362 90 + . . scaffold1375 TRF Tandem_Repeat 37957 38074 236 + . . scaffold1375 GLEAN promoter 39162 40161 1 + . ID=CGI_10003983; scaffold1375 GLEAN promoter 39846 40845 0.937918 - . ID=CGI_10003982; scaffold1375 GLEAN mRNA 40162 57556 1 + . ID=CGI_10003983; scaffold1375 TRF Tandem_Repeat 43899 44586 1054 + . . scaffold1375 TRF Tandem_Repeat 45062 45353 344 + . . scaffold1375 GLEAN promoter 59609 60608 1 + . ID=CGI_10003984; scaffold1375 GLEAN mRNA 60609 74524 1 + . ID=CGI_10003984; scaffold1375 TRF Tandem_Repeat 64259 65005 984 + . . scaffold1375 TRF Tandem_Repeat 65900 66113 74 + . . scaffold1375 TRF Tandem_Repeat 75736 75784 98 + . . scaffold1375 TRF Tandem_Repeat 78840 78894 110 + . . scaffold1375 TRF Tandem_Repeat 85543 85636 52 + . . scaffold1375 TRF Tandem_Repeat 86351 86391 73 + . . scaffold1376 TRF Tandem_Repeat 1174 1244 97 + . . scaffold1376 TRF Tandem_Repeat 1174 1244 97 + . . scaffold1376 WUBlastX DNA_TcMar-m44 4188 4874 344 + . . scaffold1376 WUBlastX DNA_TcMar-m44 4877 5113 30 + . . scaffold1376 WUBlastX DNA_TcMar-m44 4877 5068 50 + . . scaffold1376 TRF Tandem_Repeat 5721 6368 862 + . . scaffold1376 TRF Tandem_Repeat 7263 7312 75 + . . scaffold1376 GLEAN mRNA 13081 17616 0.523289 - . ID=CGI_10002794; scaffold1376 WUBlastX LINE_CR1-L2 15557 15760 32 + . . scaffold1376 WUBlastX LINE_L2 15590 15757 61 + . . scaffold1376 WUBlastX LINE_L2 15775 16107 129 + . . scaffold1376 TRF Tandem_Repeat 17259 17308 100 + . . scaffold1376 GLEAN promoter 17617 18616 0.523289 - . ID=CGI_10002794; scaffold1376 WUBlastX DNA_TcMar-Tc1 19671 20048 64 + . . scaffold1376 WUBlastX DNA_TcMar-Tc1 20045 20251 20 + . . scaffold1376 TRF Tandem_Repeat 20575 20620 51 + . . scaffold1376 TRF Tandem_Repeat 28808 28865 116 + . . scaffold1376 TRF Tandem_Repeat 29894 29941 96 + . . scaffold1376 TRF Tandem_Repeat 34081 34256 104 + . . scaffold1376 WUBlastX LINE_RTE-X 35900 36262 27 + . . scaffold1376 WUBlastX LINE_RTE-X 36038 36262 65 + . . scaffold1376 GLEAN mRNA 39109 52499 0.502849 - . ID=CGI_10002795; scaffold1376 TRF Tandem_Repeat 40654 40702 53 + . . scaffold1376 WUBlastX LINE_L1 42655 42720 20 - . . scaffold1376 WUBlastX LINE_L1-Tx1 42742 44460 429 - . . scaffold1376 WUBlastX LINE_L1 44462 44647 108 - . . scaffold1376 WUBlastX LINE_L1-Tx1 44465 44611 111 - . . scaffold1376 WUBlastX LINE_L1 44465 44689 46 - . . scaffold1376 WUBlastX LINE_R2 45442 45498 24 - . . scaffold1376 TRF Tandem_Repeat 46029 46072 88 + . . scaffold1376 TRF Tandem_Repeat 48156 48189 50 + . . scaffold1376 TRF Tandem_Repeat 49687 49724 58 + . . scaffold1376 TRF Tandem_Repeat 52004 52187 172 + . . scaffold1376 GLEAN promoter 52500 53499 0.502849 - . ID=CGI_10002795; scaffold1376 GLEAN promoter 52660 53659 1 + . ID=CGI_10002796; scaffold1376 GLEAN mRNA 53660 55432 1 + . ID=CGI_10002796; scaffold1377 TRF Tandem_Repeat 321 439 150 + . . scaffold1377 GLEAN promoter 3634 4633 0.99195 + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 4092 4368 509 + . . scaffold1377 TRF Tandem_Repeat 4128 4332 146 + . . scaffold1377 TRF Tandem_Repeat 4134 4315 118 + . . scaffold1377 GLEAN mRNA 4634 19279 0.99195 + . ID=CGI_10008617; scaffold1377 TRF Tandem_Repeat 5107 5171 130 + . . scaffold1377 WUBlastX LTR_DIRS 7737 7973 24 - . . scaffold1377 WUBlastX LTR_DIRS 7970 8221 98 - . . scaffold1377 WUBlastX LTR_DIRS 8057 8824 35 - . . scaffold1377 TRF Tandem_Repeat 13522 13575 67 + . . scaffold1377 TRF Tandem_Repeat 13524 13578 65 + . . scaffold1377 TRF Tandem_Repeat 14571 14611 82 + . . scaffold1377 TRF Tandem_Repeat 14733 14794 97 + . . scaffold1377 TRF Tandem_Repeat 18488 18532 54 + . . scaffold1377 WUBlastX DNA_Chapaev 20302 21039 25 + . . scaffold1377 WUBlastX DNA_Chapaev 20488 21123 52 + . . scaffold1377 WUBlastX DNA_Chapaev 20668 21069 71 + . . scaffold1377 WUBlastX DNA_Chapaev 20731 21039 72 + . . scaffold1377 WUBlastX DNA_Chapaev 21262 21576 43 + . . scaffold1377 GLEAN promoter 44083 45082 1 + . ID=CGI_10008618; scaffold1377 GLEAN mRNA 45083 49910 1 + . ID=CGI_10008618; scaffold1377 GLEAN mRNA 87950 88498 0.481188 - . ID=CGI_10008619; scaffold1377 GLEAN promoter 88499 89498 0.481188 - . ID=CGI_10008619; scaffold1377 TRF Tandem_Repeat 99969 100023 53 + . . scaffold1377 TRF Tandem_Repeat 99974 100016 52 + . . scaffold1377 TRF Tandem_Repeat 104163 104190 56 + . . scaffold1377 GLEAN promoter 105879 106878 0.962665 + . ID=CGI_10008620; scaffold1377 WUBlastX LINE_L1 106231 107109 36 + . . scaffold1377 WUBlastX LINE_L1 106366 107070 139 + . . scaffold1377 GLEAN mRNA 106879 107493 0.962665 + . ID=CGI_10008620; scaffold1377 GLEAN promoter 118143 119142 0.64366 + . ID=CGI_10008621; scaffold1377 GLEAN mRNA 119143 150442 0.64366 + . ID=CGI_10008621; scaffold1377 WUBlastX DNA_Crypton 127636 127800 64 + . . scaffold1377 WUBlastX DNA_Crypton 127781 128170 138 + . . scaffold1377 WUBlastX DNA_Crypton 128161 128331 78 + . . scaffold1377 TRF Tandem_Repeat 135413 135445 66 + . . scaffold1377 TRF Tandem_Repeat 146354 146531 80 + . . scaffold1377 TRF Tandem_Repeat 148295 148423 77 + . . scaffold1377 WUBlastX LTR_Gypsy 148773 149675 244 + . . scaffold1377 WUBlastX LTR_Gypsy 149001 149828 232 + . . scaffold1377 WUBlastX LTR_Gypsy 149943 150026 21 + . . scaffold1377 WUBlastX LTR_Gypsy 150089 150118 24 + . . scaffold1377 WUBlastX LTR_Gypsy 150098 150220 27 + . . scaffold1377 WUBlastX LTR_Gypsy 150493 151938 1007 + . . scaffold1377 WUBlastX LTR_Gypsy 151486 152058 173 + . . scaffold1377 TRF Tandem_Repeat 165512 165555 88 + . . scaffold1377 WUBlastX DNA_Crypton 167837 168262 135 + . . scaffold1377 WUBlastX DNA_Crypton 168259 168597 151 + . . scaffold1377 GLEAN promoter 171994 172993 0.999572 + . ID=CGI_10008622; scaffold1377 WUBlastX LINE_L1 172764 173000 30 + . . scaffold1377 WUBlastX LINE_L1 172991 173335 80 + . . scaffold1377 GLEAN mRNA 172994 173758 0.999572 + . ID=CGI_10008622; scaffold1377 WUBlastX LINE_L1-Tx1 174794 178579 1859 + . . scaffold1377 GLEAN promoter 178618 179617 0.456444 + . ID=CGI_10008623; scaffold1377 TRF Tandem_Repeat 178717 178804 158 + . . scaffold1377 GLEAN mRNA 179618 201716 0.456444 + . ID=CGI_10008623; scaffold1377 WUBlastX DNA_IS4EU 183339 183527 47 + . . scaffold1377 WUBlastX DNA_IS4EU 183939 184094 33 + . . scaffold1377 WUBlastX DNA_Kolobok-IS4 185293 185904 259 - . . scaffold1377 WUBlastX DNA_Kolobok-IS4 185897 186310 48 - . . scaffold1377 WUBlastX DNA_IS4EU 186422 186883 53 + . . scaffold1377 WUBlastX DNA_IS4EU 186566 186871 96 + . . scaffold1377 WUBlastX DNA_IS4EU 186856 187200 124 + . . scaffold1377 GLEAN mRNA 197917 212197 0.323307 - . ID=CGI_10008624; scaffold1377 TRF Tandem_Repeat 201851 201879 58 + . . scaffold1377 TRF Tandem_Repeat 204850 204899 57 + . . scaffold1377 TRF Tandem_Repeat 206166 206225 75 + . . scaffold1377 GLEAN promoter 212198 213197 0.323307 - . ID=CGI_10008624; scaffold1377 TRF Tandem_Repeat 212449 213217 887 + . . scaffold1378 GLEAN promoter 1 122 0.610176 + . ID=CGI_10001719; scaffold1378 GLEAN mRNA 123 24824 0.610176 + . ID=CGI_10001719; scaffold1379 WUBlastX LTR_Ngaro 3585 3800 49 + . . scaffold1379 TRF Tandem_Repeat 4171 4213 86 + . . scaffold1379 TRF Tandem_Repeat 8839 8870 64 + . . scaffold1379 TRF Tandem_Repeat 9435 9501 89 + . . scaffold1379 WUBlastX LINE_RTE-X 17603 17980 85 - . . scaffold1379 WUBlastX LINE_RTE-X 17618 18490 45 - . . scaffold1379 WUBlastX LINE_RTE-X 18037 18189 50 - . . scaffold1379 GLEAN mRNA 18722 19036 0.618241 - . ID=CGI_10001624; scaffold1379 GLEAN promoter 19037 20036 0.618241 - . ID=CGI_10001624; scaffold1379 TRF Tandem_Repeat 25450 25511 124 + . . scaffold138 GLEAN promoter 1 799 0.879441 + . ID=CGI_10008423; scaffold138 GLEAN mRNA 800 34081 0.879441 + . ID=CGI_10008423; scaffold138 TRF Tandem_Repeat 2601 2648 87 + . . scaffold138 TRF Tandem_Repeat 3324 3365 84 + . . scaffold138 TRF Tandem_Repeat 12438 12485 96 + . . scaffold138 WUBlastX LINE_L1-Tx1 26070 26207 37 - . . scaffold138 WUBlastX LINE_L1-Tx1 26103 26240 40 - . . scaffold138 WUBlastX LINE_L1-Tx1 26233 26649 96 - . . scaffold138 WUBlastX LINE_L1-Tx1 26236 26535 140 - . . scaffold138 WUBlastX LINE_L1-Tx1 27793 28029 57 - . . scaffold138 WUBlastX LINE_L1-Tx1 27853 28038 85 - . . scaffold138 WUBlastX LINE_L1-Tx1 27886 28029 90 - . . scaffold138 WUBlastX LINE_L1-Tx1 28032 28358 63 - . . scaffold138 WUBlastX LINE_L1 28047 28154 64 - . . scaffold138 WUBlastX LINE_L1-Tx1 28047 28466 42 - . . scaffold138 WUBlastX LINE_L1 28319 28582 41 - . . scaffold138 WUBlastX LINE_L1-Tx1 29658 29897 22 - . . scaffold138 WUBlastX LINE_L1-Tx1 29733 29906 43 - . . scaffold138 TRF Tandem_Repeat 38764 38824 86 + . . scaffold138 TRF Tandem_Repeat 38764 38827 65 + . . scaffold138 TRF Tandem_Repeat 38764 38827 92 + . . scaffold138 GLEAN promoter 40038 41037 1 + . ID=CGI_10008424; scaffold138 GLEAN mRNA 41038 50797 1 + . ID=CGI_10008424; scaffold138 TRF Tandem_Repeat 45463 46054 586 + . . scaffold138 TRF Tandem_Repeat 46822 47266 511 + . . scaffold138 TRF Tandem_Repeat 46822 47266 574 + . . scaffold138 TRF Tandem_Repeat 48687 49744 1072 + . . scaffold138 GLEAN mRNA 53139 56012 0.998993 - . ID=CGI_10008425; scaffold138 TRF Tandem_Repeat 55650 55688 78 + . . scaffold138 GLEAN promoter 56013 57012 0.998993 - . ID=CGI_10008425; scaffold138 TRF Tandem_Repeat 56964 57011 96 + . . scaffold138 TRF Tandem_Repeat 58557 60007 814 + . . scaffold138 TRF Tandem_Repeat 58557 59765 717 + . . scaffold138 TRF Tandem_Repeat 58596 59960 868 + . . scaffold138 TRF Tandem_Repeat 58600 59487 402 + . . scaffold138 TRF Tandem_Repeat 59502 59988 208 + . . scaffold138 WUBlastX LINE_L1-Tx1 60053 62833 1312 + . . scaffold138 GLEAN promoter 64465 65464 0.866735 + . ID=CGI_10008426; scaffold138 GLEAN mRNA 65465 69944 0.866735 + . ID=CGI_10008426; scaffold138 GLEAN mRNA 71718 76716 0.998636 - . ID=CGI_10008427; scaffold138 WUBlastX LINE_L1 75421 75717 49 - . . scaffold138 WUBlastX LINE_L1-Tx1 75704 75919 49 - . . scaffold138 WUBlastX LINE_L1-Tx1 75918 76130 70 - . . scaffold138 WUBlastX LINE_L1-Tx1 76008 76190 33 - . . scaffold138 GLEAN promoter 76717 77716 0.998636 - . ID=CGI_10008427; scaffold138 TRF Tandem_Repeat 78375 78425 102 + . . scaffold138 WUBlastX LINE_RTE-X 78456 79112 74 + . . scaffold138 WUBlastX LINE_RTE-X 79109 80005 587 + . . scaffold138 WUBlastX LINE_RTE-X 80007 80888 345 + . . scaffold138 GLEAN promoter 83559 84558 1 + . ID=CGI_10008428; scaffold138 GLEAN mRNA 84559 99053 1 + . ID=CGI_10008428; scaffold138 WUBlastX LINE_RTE-X 86482 86679 41 - . . scaffold138 WUBlastX LINE_RTE-X 86694 86969 66 - . . scaffold138 WUBlastX LINE_RTE-X 86697 86882 70 - . . scaffold138 TRF Tandem_Repeat 101113 101145 66 + . . scaffold138 GLEAN promoter 144635 145634 0.702317 + . ID=CGI_10008429; scaffold138 GLEAN mRNA 145635 148451 0.702317 + . ID=CGI_10008429; scaffold138 GLEAN mRNA 149468 155695 0.836238 - . ID=CGI_10008430; scaffold138 GLEAN promoter 155696 156695 0.836238 - . ID=CGI_10008430; scaffold138 GLEAN mRNA 160827 167097 0.989024 - . ID=CGI_10008431; scaffold138 WUBlastX LINE_CR1-L2 164292 164687 50 - . . scaffold138 WUBlastX LINE_L2 164292 164621 100 - . . scaffold138 GLEAN promoter 167098 168097 0.989024 - . ID=CGI_10008431; scaffold138 TRF Tandem_Repeat 167657 167688 64 + . . scaffold138 GLEAN promoter 170980 171979 0.998697 + . ID=CGI_10008432; scaffold138 GLEAN mRNA 171980 174551 0.998697 + . ID=CGI_10008432; scaffold138 GLEAN mRNA 182212 182415 0.999955 - . ID=CGI_10008433; scaffold138 GLEAN promoter 182416 183415 0.999955 - . ID=CGI_10008433; scaffold138 GLEAN promoter 184804 185803 0.942984 + . ID=CGI_10008434; scaffold138 GLEAN mRNA 185804 189482 0.942984 + . ID=CGI_10008434; scaffold138 GLEAN mRNA 190278 192930 1 - . ID=CGI_10008435; scaffold138 GLEAN promoter 192931 193930 1 - . ID=CGI_10008435; scaffold138 TRF Tandem_Repeat 200086 200116 62 + . . scaffold138 WUBlastX DNA_Harbinger 200414 200593 43 + . . scaffold138 WUBlastX DNA_Harbinger 200456 200584 59 + . . scaffold138 GLEAN mRNA 201916 204491 0.730437 - . ID=CGI_10008436; scaffold138 GLEAN promoter 204492 205491 0.730437 - . ID=CGI_10008436; scaffold1380 GLEAN mRNA 162 4238 0.734583 - . ID=CGI_10004351; scaffold1380 GLEAN promoter 4239 5238 0.734583 - . ID=CGI_10004351; scaffold1380 TRF Tandem_Repeat 9951 9990 53 + . . scaffold1380 TRF Tandem_Repeat 25592 25631 80 + . . scaffold1380 TRF Tandem_Repeat 26493 26713 134 + . . scaffold1380 TRF Tandem_Repeat 26494 26710 174 + . . scaffold1380 TRF Tandem_Repeat 44336 44469 259 + . . scaffold1380 TRF Tandem_Repeat 46305 46335 62 + . . scaffold1380 WUBlastX LINE_RTE-X 48937 49833 211 + . . scaffold1380 WUBlastX LINE_RTE-X 49186 49866 312 + . . scaffold1380 TRF Tandem_Repeat 58488 58594 89 + . . scaffold1380 TRF Tandem_Repeat 58490 58636 66 + . . scaffold1380 GLEAN promoter 90578 91577 1 + . ID=CGI_10004352; scaffold1380 GLEAN mRNA 91578 96409 1 + . ID=CGI_10004352; scaffold1380 TRF Tandem_Repeat 94660 94774 178 + . . scaffold1381 GLEAN mRNA 752 22212 0.543872 - . ID=CGI_10002299; scaffold1381 GLEAN promoter 22213 23212 0.543872 - . ID=CGI_10002299; scaffold1382 TRF Tandem_Repeat 7393 7458 107 + . . scaffold1382 TRF Tandem_Repeat 7631 8378 1198 + . . scaffold1382 GLEAN promoter 19085 20084 0.905952 + . ID=CGI_10011169; scaffold1382 GLEAN mRNA 20085 30408 0.905952 + . ID=CGI_10011169; scaffold1382 TRF Tandem_Repeat 27806 27899 152 + . . scaffold1382 GLEAN promoter 33512 34511 0.99101 + . ID=CGI_10011170; scaffold1382 GLEAN mRNA 34512 35063 0.99101 + . ID=CGI_10011170; scaffold1382 GLEAN promoter 35913 36912 0.991043 + . ID=CGI_10011171; scaffold1382 GLEAN mRNA 36913 42504 0.991043 + . ID=CGI_10011171; scaffold1382 TRF Tandem_Repeat 37786 37825 80 + . . scaffold1382 WUBlastX LINE_CR1 51337 51645 62 + . . scaffold1382 WUBlastX LINE_CR1 51668 52099 90 + . . scaffold1382 WUBlastX LINE_L1 52836 53180 83 + . . scaffold1382 WUBlastX LINE_L1-Tx1 52893 53189 139 + . . scaffold1382 WUBlastX LINE_L1-Tx1 53206 53784 131 + . . scaffold1382 WUBlastX LINE_L1-Tx1 53820 54761 82 + . . scaffold1382 WUBlastX LINE_L1-Tx1 54012 54800 124 + . . scaffold1382 WUBlastX LINE_L1-Tx1 54168 54779 277 + . . scaffold1382 WUBlastX LINE_L1 55052 55135 25 + . . scaffold1382 TRF Tandem_Repeat 65439 65470 55 + . . scaffold1382 WUBlastX LTR_Pao 68375 69259 715 - . . scaffold1382 WUBlastX LTR_Pao 69189 69659 506 - . . scaffold1382 GLEAN promoter 101303 102302 0.544522 + . ID=CGI_10011172; scaffold1382 GLEAN mRNA 102303 109120 0.544522 + . ID=CGI_10011172; scaffold1382 GLEAN mRNA 113082 142955 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 117244 117674 727 + . . scaffold1382 TRF Tandem_Repeat 120278 120323 56 + . . scaffold1382 TRF Tandem_Repeat 122709 122759 102 + . . scaffold1382 TRF Tandem_Repeat 122945 122977 66 + . . scaffold1382 TRF Tandem_Repeat 122975 123018 88 + . . scaffold1382 TRF Tandem_Repeat 123513 123572 66 + . . scaffold1382 TRF Tandem_Repeat 128768 128806 60 + . . scaffold1382 TRF Tandem_Repeat 138525 138614 94 + . . scaffold1382 WUBlastX LINE_CR1 138632 139027 70 + . . scaffold1382 WUBlastX LINE_RTE-X 138692 139549 248 + . . scaffold1382 WUBlastX LINE_RTE-X 139337 139606 86 + . . scaffold1382 TRF Tandem_Repeat 139814 139873 57 + . . scaffold1382 TRF Tandem_Repeat 140487 140769 128 + . . scaffold1382 GLEAN promoter 142956 143955 0.812933 - . ID=CGI_10011173; scaffold1382 TRF Tandem_Repeat 145029 145090 124 + . . scaffold1382 WUBlastX DNA_Harbinger 151445 151600 62 - . . scaffold1382 WUBlastX DNA_Harbinger 151466 151624 20 - . . scaffold1382 WUBlastX DNA_Harbinger 151629 151904 48 - . . scaffold1382 WUBlastX DNA_TcMar-Tc1 153589 154224 365 - . . scaffold1382 WUBlastX DNA_TcMar-Tc1 154227 154508 52 - . . scaffold1382 TRF Tandem_Repeat 155720 155791 135 + . . scaffold1382 WUBlastX LINE_L1 155905 156387 43 + . . scaffold1382 GLEAN promoter 163417 164416 0.9108 + . ID=CGI_10011174; scaffold1382 GLEAN mRNA 164417 169153 0.9108 + . ID=CGI_10011174; scaffold1382 TRF Tandem_Repeat 166726 166843 146 + . . scaffold1382 TRF Tandem_Repeat 169485 169546 124 + . . scaffold1382 GLEAN promoter 172351 173350 0.814037 + . ID=CGI_10011175; scaffold1382 GLEAN mRNA 173351 194736 0.814037 + . ID=CGI_10011175; scaffold1382 TRF Tandem_Repeat 178419 178835 595 + . . scaffold1382 TRF Tandem_Repeat 178434 178642 88 + . . scaffold1382 TRF Tandem_Repeat 198258 198310 70 + . . scaffold1382 TRF Tandem_Repeat 198258 198309 50 + . . scaffold1382 GLEAN promoter 198672 199671 1 + . ID=CGI_10011176; scaffold1382 GLEAN mRNA 199672 206821 1 + . ID=CGI_10011176; scaffold1382 WUBlastX DNA_P 206848 206958 20 + . . scaffold1382 GLEAN mRNA 212938 228080 0.974072 - . ID=CGI_10011177; scaffold1382 GLEAN promoter 217944 218943 0.999189 + . ID=CGI_10011178; scaffold1382 WUBlastX DNA_Harbinger 217967 218074 21 + . . scaffold1382 WUBlastX DNA_Harbinger 218920 219264 170 + . . scaffold1382 GLEAN mRNA 218944 220078 0.999189 + . ID=CGI_10011178; scaffold1382 GLEAN promoter 219173 220172 0.792821 + . ID=CGI_10011179; scaffold1382 WUBlastX DNA_Harbinger 219353 219634 220 + . . scaffold1382 GLEAN promoter 219689 220688 0.792821 + . ID=CGI_10011180; scaffold1382 WUBlastX DNA_Harbinger 219830 219946 37 + . . scaffold1382 GLEAN mRNA 220173 220613 0.792821 + . ID=CGI_10011179; scaffold1382 GLEAN mRNA 220689 221309 0.792821 + . ID=CGI_10011180; scaffold1382 TRF Tandem_Repeat 225971 228025 3397 + . . scaffold1382 TRF Tandem_Repeat 226474 228025 2518 + . . scaffold1382 TRF Tandem_Repeat 226703 228025 2293 + . . scaffold1382 GLEAN promoter 228081 229080 0.974072 - . ID=CGI_10011177; scaffold1382 GLEAN mRNA 229926 239669 0.88642 - . ID=CGI_10011181; scaffold1382 WUBlastX LTR_DIRS 232612 232866 88 - . . scaffold1382 WUBlastX LTR_DIRS 232615 232818 120 - . . scaffold1382 WUBlastX DNA_Kolobok 233324 233710 35 - . . scaffold1382 GLEAN promoter 239670 240669 0.88642 - . ID=CGI_10011181; scaffold1382 TRF Tandem_Repeat 243864 243912 98 + . . scaffold1382 WUBlastX LINE_RTE-X 244734 244856 38 + . . scaffold1382 WUBlastX LTR_Gypsy 252649 253038 74 - . . scaffold1382 WUBlastX LTR_Gypsy 253043 253792 144 - . . scaffold1382 WUBlastX LTR_Gypsy 253833 254102 34 - . . scaffold1382 WUBlastX LTR_Gypsy 253899 254138 64 - . . scaffold1382 WUBlastX LTR_Gypsy 254056 254352 105 - . . scaffold1382 WUBlastX LTR_Gypsy-Cigr 254083 254277 106 - . . scaffold1382 WUBlastX LTR_Gypsy 254122 254517 74 - . . scaffold1382 WUBlastX LINE_L2 272001 272585 29 + . . scaffold1382 WUBlastX LINE_L2 272100 272819 150 + . . scaffold1382 WUBlastX LINE_CR1-L2 272268 272792 169 + . . scaffold1382 WUBlastX LINE_L2 273613 276849 1738 + . . scaffold1382 WUBlastX LINE_CR1 277196 277261 20 + . . scaffold1382 WUBlastX LINE_Penelope 279963 280121 66 - . . scaffold1382 WUBlastX LINE_Penelope 279987 280124 71 - . . scaffold1383 TRF Tandem_Repeat 11221 11278 98 + . . scaffold1383 WUBlastX LINE_L1 11365 11667 34 - . . scaffold1383 WUBlastX LINE_L1-Tx1 11589 11804 37 - . . scaffold1383 WUBlastX LINE_L1-Tx1 12432 12743 39 - . . scaffold1383 WUBlastX LINE_L1-Tx1 12562 13311 161 - . . scaffold1383 WUBlastX LINE_L1-Tx1 13287 14039 250 - . . scaffold1383 WUBlastX LINE_L1-Tx1 13490 14218 136 - . . scaffold1383 WUBlastX LINE_L1-Tx1 14161 14895 283 - . . scaffold1383 WUBlastX LINE_L1 14850 15206 35 - . . scaffold1383 WUBlastX LINE_L1-Tx1 14901 15152 128 - . . scaffold1383 WUBlastX LTR_Gypsy 17041 20997 3602 + . . scaffold1383 TRF Tandem_Repeat 25317 25500 334 + . . scaffold1383 TRF Tandem_Repeat 28332 28374 86 + . . scaffold1383 TRF Tandem_Repeat 39736 39785 100 + . . scaffold1383 TRF Tandem_Repeat 39787 39813 54 + . . scaffold1383 WUBlastX LINE_L2 56159 56635 140 + . . scaffold1383 WUBlastX LINE_L1 56237 56674 213 + . . scaffold1383 WUBlastX LINE_CR1 56703 57248 50 + . . scaffold1383 WUBlastX LINE_RTE-X 56790 57356 97 + . . scaffold1383 WUBlastX LINE_RTE-X 56796 57266 129 + . . scaffold1383 WUBlastX LINE_RTE-X 57359 57601 32 + . . scaffold1383 WUBlastX LINE_RTE-X 57380 57583 73 + . . scaffold1383 WUBlastX DNA_Harbinger 58118 58420 75 + . . scaffold1383 WUBlastX DNA_Harbinger 58142 58381 77 + . . scaffold1383 WUBlastX DNA_Harbinger 58611 58787 40 + . . scaffold1383 WUBlastX DNA_Harbinger 58671 58787 108 + . . scaffold1383 WUBlastX DNA_Harbinger 58896 59105 52 + . . scaffold1383 WUBlastX DNA_Harbinger 58962 59138 44 + . . scaffold1383 TRF Tandem_Repeat 64727 64928 120 + . . scaffold1383 GLEAN mRNA 65157 67483 0.999987 - . ID=CGI_10003249; scaffold1383 GLEAN promoter 67484 67837 0.999987 - . ID=CGI_10003249; scaffold1384 GLEAN promoter 139 1138 1 + . ID=CGI_10000502; scaffold1384 GLEAN mRNA 1139 5363 1 + . ID=CGI_10000502; scaffold1385 TRF Tandem_Repeat 1593 1633 82 + . . scaffold1385 GLEAN mRNA 10286 11218 0.906525 - . ID=CGI_10013831; scaffold1385 GLEAN promoter 11219 12218 0.906525 - . ID=CGI_10013831; scaffold1385 GLEAN mRNA 13688 19311 0.958432 - . ID=CGI_10013832; scaffold1385 GLEAN promoter 14491 15490 0.999996 + . ID=CGI_10013833; scaffold1385 GLEAN mRNA 15491 22292 0.999996 + . ID=CGI_10013833; scaffold1385 GLEAN promoter 19312 20311 0.958432 - . ID=CGI_10013832; scaffold1385 GLEAN mRNA 22815 31330 0.957817 - . ID=CGI_10013834; scaffold1385 WUBlastX LINE_RTE-X 24613 24834 30 + . . scaffold1385 WUBlastX LINE_RTE-X 24613 24885 26 + . . scaffold1385 WUBlastX LINE_RTE-X 24682 24831 40 + . . scaffold1385 GLEAN promoter 31331 32330 0.957817 - . ID=CGI_10013834; scaffold1385 GLEAN mRNA 32387 32871 1 - . ID=CGI_10013835; scaffold1385 GLEAN promoter 32872 33871 1 - . ID=CGI_10013835; scaffold1385 TRF Tandem_Repeat 33279 33327 98 + . . scaffold1385 GLEAN mRNA 33579 36277 0.968715 - . ID=CGI_10013836; scaffold1385 GLEAN promoter 36278 37277 0.968715 - . ID=CGI_10013836; scaffold1385 GLEAN promoter 38592 39591 0.99876 + . ID=CGI_10013837; scaffold1385 GLEAN mRNA 39592 44434 0.99876 + . ID=CGI_10013837; scaffold1385 GLEAN promoter 43526 44525 0.99876 + . ID=CGI_10013838; scaffold1385 GLEAN mRNA 44526 48641 0.99876 + . ID=CGI_10013838; scaffold1385 TRF Tandem_Repeat 47208 47954 775 + . . scaffold1385 GLEAN promoter 48183 49182 0.499836 + . ID=CGI_10013839; scaffold1385 TRF Tandem_Repeat 48203 48261 118 + . . scaffold1385 GLEAN mRNA 49183 64587 0.499836 + . ID=CGI_10013839; scaffold1385 TRF Tandem_Repeat 50643 50705 126 + . . scaffold1385 GLEAN mRNA 65442 84428 0.968283 - . ID=CGI_10013840; scaffold1385 TRF Tandem_Repeat 70386 71373 1203 + . . scaffold1385 TRF Tandem_Repeat 76174 76232 91 + . . scaffold1385 TRF Tandem_Repeat 81031 81084 58 + . . scaffold1385 TRF Tandem_Repeat 81034 81079 58 + . . scaffold1385 GLEAN promoter 84429 85428 0.968283 - . ID=CGI_10013840; scaffold1385 GLEAN mRNA 84539 135495 0.195018 - . ID=CGI_10013841; scaffold1385 TRF Tandem_Repeat 93388 93416 58 + . . scaffold1385 TRF Tandem_Repeat 95167 95210 88 + . . scaffold1385 TRF Tandem_Repeat 96660 96713 99 + . . scaffold1385 TRF Tandem_Repeat 105193 105229 56 + . . scaffold1385 GLEAN promoter 135496 136495 0.195018 - . ID=CGI_10013841; scaffold1385 GLEAN mRNA 137684 146009 0.615381 - . ID=CGI_10013842; scaffold1385 TRF Tandem_Repeat 144689 144745 69 + . . scaffold1385 GLEAN promoter 146010 147009 0.615381 - . ID=CGI_10013842; scaffold1385 TRF Tandem_Repeat 158045 158131 79 + . . scaffold1385 GLEAN mRNA 160598 168746 0.878569 - . ID=CGI_10013843; scaffold1385 GLEAN promoter 166518 167517 1 + . ID=CGI_10013844; scaffold1385 GLEAN mRNA 167518 178633 1 + . ID=CGI_10013844; scaffold1385 GLEAN promoter 168747 169746 0.878569 - . ID=CGI_10013843; scaffold1385 TRF Tandem_Repeat 175799 175925 130 + . . scaffold1385 GLEAN promoter 182605 183604 0.999996 + . ID=CGI_10013845; scaffold1385 GLEAN mRNA 183605 207390 0.999996 + . ID=CGI_10013845; scaffold1385 GLEAN mRNA 210890 241237 0.992106 - . ID=CGI_10013846; scaffold1385 GLEAN promoter 241238 242237 0.992106 - . ID=CGI_10013846; scaffold1385 GLEAN mRNA 243226 264530 0.476499 - . ID=CGI_10013847; scaffold1385 GLEAN promoter 264531 265530 0.476499 - . ID=CGI_10013847; scaffold1385 GLEAN mRNA 265685 273877 0.994335 - . ID=CGI_10013848; scaffold1385 WUBlastX LINE_RTE-X 268826 269263 49 - . . scaffold1385 WUBlastX LINE_RTE-X 268949 269323 88 - . . scaffold1385 GLEAN promoter 273878 274877 0.994335 - . ID=CGI_10013848; scaffold1385 GLEAN mRNA 275575 278435 0.997817 - . ID=CGI_10013849; scaffold1385 GLEAN promoter 278436 279435 0.997817 - . ID=CGI_10013849; scaffold1385 TRF Tandem_Repeat 280731 280808 88 + . . scaffold1385 TRF Tandem_Repeat 287939 287972 54 + . . scaffold1385 TRF Tandem_Repeat 287970 288046 154 + . . scaffold1385 TRF Tandem_Repeat 294336 294367 64 + . . scaffold1385 GLEAN mRNA 302243 307542 1 - . ID=CGI_10013850; scaffold1385 GLEAN promoter 307543 308542 1 - . ID=CGI_10013850; scaffold1385 WUBlastX DNA_TcMar-Marin 313705 313866 22 + . . scaffold1385 WUBlastX DNA_TcMar-Marin 313898 314083 44 + . . scaffold1385 WUBlastX LINE_L1 329745 330248 39 - . . scaffold1385 WUBlastX LINE_L1-Tx1 329889 330302 48 - . . scaffold1385 WUBlastX LINE_L1-Tx1 329991 330266 107 - . . scaffold1385 WUBlastX LINE_L1 330108 330302 49 - . . scaffold1385 WUBlastX LINE_L1 330307 330498 40 - . . scaffold1385 WUBlastX LINE_L1-Tx1 330337 330546 61 - . . scaffold1385 WUBlastX LINE_L1-Tx1 330513 330764 84 - . . scaffold1385 WUBlastX LINE_L1-Tx1 330555 330764 118 - . . scaffold1385 GLEAN mRNA 344395 351595 0.99897 - . ID=CGI_10013851; scaffold1385 TRF Tandem_Repeat 349381 349436 112 + . . scaffold1385 TRF Tandem_Repeat 349703 349738 72 + . . scaffold1385 GLEAN promoter 351596 352595 0.99897 - . ID=CGI_10013851; scaffold1385 TRF Tandem_Repeat 354859 354924 132 + . . scaffold1385 GLEAN promoter 358805 359804 0.558382 + . ID=CGI_10013852; scaffold1385 GLEAN mRNA 359805 369778 0.558382 + . ID=CGI_10013852; scaffold1386 GLEAN promoter 1 509 0.303685 + . ID=CGI_10005444; scaffold1386 GLEAN mRNA 510 3541 0.303685 + . ID=CGI_10005444; scaffold1386 GLEAN mRNA 5618 8393 1 - . ID=CGI_10005445; scaffold1386 GLEAN promoter 8394 9393 1 - . ID=CGI_10005445; scaffold1386 TRF Tandem_Repeat 8699 8764 132 + . . scaffold1386 GLEAN mRNA 13434 33022 0.499838 - . ID=CGI_10005446; scaffold1386 GLEAN promoter 19891 20890 0.776639 + . ID=CGI_10005447; scaffold1386 GLEAN mRNA 20891 21052 0.776639 + . ID=CGI_10005447; scaffold1386 GLEAN promoter 25372 26371 1 + . ID=CGI_10005448; scaffold1386 GLEAN mRNA 26372 33696 1 + . ID=CGI_10005448; scaffold1386 GLEAN promoter 33023 34022 0.499838 - . ID=CGI_10005446; scaffold1386 GLEAN promoter 37873 38872 0.877137 + . ID=CGI_10005449; scaffold1386 GLEAN mRNA 38873 48821 0.877137 + . ID=CGI_10005449; scaffold1386 TRF Tandem_Repeat 42688 42822 225 + . . scaffold1386 TRF Tandem_Repeat 45247 45298 104 + . . scaffold1386 TRF Tandem_Repeat 55329 55373 90 + . . scaffold1386 GLEAN promoter 56401 57400 1 + . ID=CGI_10005450; scaffold1386 GLEAN mRNA 57401 60116 1 + . ID=CGI_10005450; scaffold1386 GLEAN mRNA 67154 69913 0.894088 - . ID=CGI_10005451; scaffold1386 GLEAN promoter 69914 70913 0.894088 - . ID=CGI_10005451; scaffold1386 TRF Tandem_Repeat 73511 73545 56 + . . scaffold1386 TRF Tandem_Repeat 73545 73593 98 + . . scaffold1386 TRF Tandem_Repeat 74476 74656 236 + . . scaffold1386 TRF Tandem_Repeat 74657 74817 205 + . . scaffold1386 TRF Tandem_Repeat 75022 75957 540 + . . scaffold1386 TRF Tandem_Repeat 75022 75957 185 + . . scaffold1386 TRF Tandem_Repeat 75153 75956 606 + . . scaffold1386 TRF Tandem_Repeat 75164 75849 479 + . . scaffold1386 WUBlastX DNA_TcMar-Tc1 81833 82861 430 - . . scaffold1386 WUBlastX LINE_RTE-X 91230 91565 63 + . . scaffold1386 TRF Tandem_Repeat 114170 114266 141 + . . scaffold1386 WUBlastX LINE_CR1 115439 116110 156 + . . scaffold1386 WUBlastX LINE_L2 115601 116128 352 + . . scaffold1386 WUBlastX LTR_Gypsy 126618 126830 30 - . . scaffold1386 WUBlastX LTR_Gypsy 126669 126887 42 - . . scaffold1387 WUBlastX LTR_Copia 1 903 719 - . . scaffold1387 WUBlastX LTR_Copia 947 2782 905 - . . scaffold1388 TRF Tandem_Repeat 1812 1898 122 + . . scaffold1388 GLEAN mRNA 9002 35424 0.580489 - . ID=CGI_10008878; scaffold1388 TRF Tandem_Repeat 11253 11287 70 + . . scaffold1388 TRF Tandem_Repeat 13428 13454 54 + . . scaffold1388 TRF Tandem_Repeat 16830 16887 116 + . . scaffold1388 TRF Tandem_Repeat 22527 22609 157 + . . scaffold1388 TRF Tandem_Repeat 24329 24371 86 + . . scaffold1388 TRF Tandem_Repeat 26351 27164 678 + . . scaffold1388 GLEAN promoter 35425 36424 0.580489 - . ID=CGI_10008878; scaffold1388 TRF Tandem_Repeat 36980 37569 552 + . . scaffold1388 TRF Tandem_Repeat 37055 37569 503 + . . scaffold1388 TRF Tandem_Repeat 37055 37569 600 + . . scaffold1388 WUBlastX LINE_L1-Tx1 38891 41434 1340 - . . scaffold1388 GLEAN mRNA 45800 48793 0.999973 - . ID=CGI_10008880; scaffold1388 GLEAN promoter 48794 49793 0.999973 - . ID=CGI_10008880; scaffold1388 WUBlastX LINE_L1 57423 57959 164 + . . scaffold1388 WUBlastX LINE_L1-Tx1 57510 57995 349 + . . scaffold1388 WUBlastX LINE_L1-Tx1 57513 58091 146 + . . scaffold1388 WUBlastX LINE_L1-Tx1 58019 58186 64 + . . scaffold1388 WUBlastX LINE_L1-Tx1 58028 58258 29 + . . scaffold1388 WUBlastX DNA_Academ 59759 59926 35 + . . scaffold1388 TRF Tandem_Repeat 61565 61603 78 + . . scaffold1388 TRF Tandem_Repeat 61990 62024 70 + . . scaffold1388 TRF Tandem_Repeat 85994 86027 59 + . . scaffold1388 TRF Tandem_Repeat 88120 88168 98 + . . scaffold1388 TRF Tandem_Repeat 99000 99095 192 + . . scaffold1388 WUBlastX LINE_Penelope 103956 104168 51 - . . scaffold1388 TRF Tandem_Repeat 105826 105945 150 + . . scaffold1388 TRF Tandem_Repeat 109034 109174 129 + . . scaffold1388 TRF Tandem_Repeat 110704 110837 119 + . . scaffold1388 TRF Tandem_Repeat 117422 117473 104 + . . scaffold1388 WUBlastX LTR_Gypsy 120520 121146 66 + . . scaffold1388 WUBlastX LTR_Gypsy 120694 121116 100 + . . scaffold1388 WUBlastX LTR_Gypsy 120694 121203 70 + . . scaffold1388 TRF Tandem_Repeat 122094 122191 196 + . . scaffold1388 TRF Tandem_Repeat 122097 122281 73 + . . scaffold1388 TRF Tandem_Repeat 122190 122232 86 + . . scaffold1388 TRF Tandem_Repeat 122230 122263 59 + . . scaffold1388 TRF Tandem_Repeat 122233 122281 62 + . . scaffold1388 WUBlastX LTR_Ngaro 151806 152477 254 + . . scaffold1388 WUBlastX LTR_Ngaro 151920 152744 153 + . . scaffold1388 WUBlastX LTR_Ngaro 152825 152989 95 + . . scaffold1388 WUBlastX LTR_Ngaro 152989 153441 354 + . . scaffold1388 WUBlastX LTR_Ngaro 153461 154348 525 + . . scaffold1388 WUBlastX LTR_Ngaro 154383 154580 25 + . . scaffold1388 WUBlastX LTR_Ngaro 154389 154457 40 + . . scaffold1388 WUBlastX LTR_Ngaro 154610 155257 378 + . . scaffold1388 WUBlastX LINE_RTE-X 155639 156019 66 + . . scaffold1388 GLEAN mRNA 164265 174689 0.999675 - . ID=CGI_10008881; scaffold1388 TRF Tandem_Repeat 165668 165710 77 + . . scaffold1388 TRF Tandem_Repeat 171819 171882 60 + . . scaffold1388 TRF Tandem_Repeat 173519 173554 63 + . . scaffold1388 GLEAN promoter 174690 175689 0.999675 - . ID=CGI_10008881; scaffold1388 GLEAN mRNA 175579 196501 0.977359 - . ID=CGI_10008882; scaffold1388 TRF Tandem_Repeat 190772 190839 127 + . . scaffold1388 GLEAN promoter 196502 197501 0.977359 - . ID=CGI_10008882; scaffold1388 WUBlastX LINE_L1 198550 198750 53 + . . scaffold1388 WUBlastX LINE_L1 198589 198741 61 + . . scaffold1388 WUBlastX LINE_L1-Tx1 198610 198738 74 + . . scaffold1388 WUBlastX LINE_L1 198661 198738 74 + . . scaffold1388 WUBlastX LINE_L1 198752 198955 87 + . . scaffold1388 WUBlastX LINE_L1-Tx1 198836 199132 21 + . . scaffold1388 WUBlastX LINE_L1-Tx1 199405 199698 91 + . . scaffold1388 WUBlastX LINE_L1 199447 199932 31 + . . scaffold1388 WUBlastX LINE_L1-Tx1 199456 199698 100 + . . scaffold1388 WUBlastX LINE_L1-Tx1 199456 199761 79 + . . scaffold1388 WUBlastX LINE_L1-Tx1 199468 199833 56 + . . scaffold1388 GLEAN mRNA 201164 204064 0.975915 - . ID=CGI_10008883; scaffold1388 TRF Tandem_Repeat 202351 202482 113 + . . scaffold1388 GLEAN promoter 204065 205064 0.975915 - . ID=CGI_10008883; scaffold1388 TRF Tandem_Repeat 209744 209829 73 + . . scaffold1388 TRF Tandem_Repeat 209887 209927 66 + . . scaffold1388 WUBlastX LINE_CR1-L2 214891 214980 22 + . . scaffold1388 WUBlastX LINE_RTE-X 216145 216543 65 + . . scaffold1388 GLEAN promoter 216989 217988 0.998794 + . ID=CGI_10008884; scaffold1388 GLEAN mRNA 217989 218602 0.998794 + . ID=CGI_10008884; scaffold1389 GLEAN promoter 1 249 0.999068 + . ID=CGI_10001841; scaffold1389 GLEAN mRNA 250 795 0.999068 + . ID=CGI_10001841; scaffold1389 GLEAN promoter 2115 3114 0.999938 + . ID=CGI_10001842; scaffold1389 GLEAN mRNA 3115 4913 0.999938 + . ID=CGI_10001842; scaffold1389 GLEAN mRNA 7212 17526 0.802968 - . ID=CGI_10001843; scaffold1389 GLEAN promoter 7750 8749 0.618241 + . ID=CGI_10001844; scaffold1389 GLEAN mRNA 8750 9076 0.618241 + . ID=CGI_10001844; scaffold1389 GLEAN promoter 16781 17780 1 + . ID=CGI_10001845; scaffold1389 GLEAN promoter 17527 18526 0.802968 - . ID=CGI_10001843; scaffold1389 GLEAN mRNA 17781 20930 1 + . ID=CGI_10001845; scaffold1389 GLEAN promoter 20527 21526 1 + . ID=CGI_10001846; scaffold1389 GLEAN mRNA 21527 24375 1 + . ID=CGI_10001846; scaffold139 WUBlastX LTR_DIRS 3726 4418 134 - . . scaffold139 WUBlastX LTR_DIRS 3945 4616 100 - . . scaffold139 WUBlastX LTR_DIRS 4622 5488 93 - . . scaffold139 WUBlastX LTR_DIRS 4721 5386 180 - . . scaffold139 TRF Tandem_Repeat 12342 12379 67 + . . scaffold139 WUBlastX LINE_L1-Tx1 13863 14111 24 + . . scaffold139 WUBlastX RC_Helitron 19573 19905 218 - . . scaffold139 WUBlastX RC_Helitron 19911 20084 46 - . . scaffold139 WUBlastX DNA_Helitron 20093 20950 362 - . . scaffold139 WUBlastX RC_Helitron 20279 21142 270 - . . scaffold139 TRF Tandem_Repeat 21156 21440 414 + . . scaffold139 WUBlastX DNA_NOF 21728 21976 68 - . . scaffold139 TRF Tandem_Repeat 28785 29763 1289 + . . scaffold139 WUBlastX DNA_hAT-Tip100 45544 47088 597 - . . scaffold139 WUBlastX DNA_hAT-Tip100 47419 47694 122 - . . scaffold139 WUBlastX DNA_hAT-Tip100 47434 47856 94 - . . scaffold139 WUBlastX DNA_IS4EU 50457 50591 27 + . . scaffold139 WUBlastX DNA_IS4EU 50761 50853 29 + . . scaffold139 WUBlastX DNA_Kolobok-IS4 50883 51011 25 + . . scaffold139 WUBlastX DNA_IS4EU 50892 50969 31 + . . scaffold139 GLEAN promoter 51360 52359 0.997727 + . ID=CGI_10005334; scaffold139 GLEAN mRNA 52360 53211 0.997727 + . ID=CGI_10005334; scaffold139 TRF Tandem_Repeat 53501 53541 82 + . . scaffold139 TRF Tandem_Repeat 56530 56695 149 + . . scaffold139 TRF Tandem_Repeat 56694 56853 140 + . . scaffold139 WUBlastX LTR_Ngaro 56901 57341 144 - . . scaffold139 WUBlastX LTR_Ngaro 56901 57482 136 - . . scaffold139 WUBlastX LTR_Ngaro 56901 57590 120 - . . scaffold139 TRF Tandem_Repeat 57844 58588 1211 + . . scaffold139 TRF Tandem_Repeat 58845 58947 134 + . . scaffold139 WUBlastX LINE_L1 75148 75447 134 + . . scaffold139 WUBlastX LINE_RTE-X 75572 75757 21 + . . scaffold139 TRF Tandem_Repeat 78452 78499 96 + . . scaffold139 GLEAN promoter 89265 90264 0.508065 + . ID=CGI_10005335; scaffold139 GLEAN mRNA 90265 105142 0.508065 + . ID=CGI_10005335; scaffold139 TRF Tandem_Repeat 99820 99851 55 + . . scaffold139 TRF Tandem_Repeat 101781 101806 52 + . . scaffold139 WUBlastX LINE_CR1 106197 106502 118 - . . scaffold139 TRF Tandem_Repeat 106555 106664 74 + . . scaffold139 GLEAN promoter 107647 108646 0.322577 + . ID=CGI_10005336; scaffold139 GLEAN mRNA 108647 121634 0.322577 + . ID=CGI_10005336; scaffold139 TRF Tandem_Repeat 109044 109084 82 + . . scaffold139 TRF Tandem_Repeat 109218 109730 785 + . . scaffold139 TRF Tandem_Repeat 111740 112890 1089 + . . scaffold139 TRF Tandem_Repeat 111740 112890 1006 + . . scaffold139 TRF Tandem_Repeat 111740 112890 1181 + . . scaffold1391 TRF Tandem_Repeat 28074 28106 57 + . . scaffold1391 WUBlastX DNA_TcMar-Marin 46841 47056 82 - . . scaffold1391 TRF Tandem_Repeat 54677 54723 85 + . . scaffold1391 TRF Tandem_Repeat 57059 57091 66 + . . scaffold1391 TRF Tandem_Repeat 66475 66522 96 + . . scaffold1391 GLEAN promoter 67087 68086 0.592946 + . ID=CGI_10016932; scaffold1391 GLEAN mRNA 68087 69697 0.592946 + . ID=CGI_10016932; scaffold1391 TRF Tandem_Repeat 127329 127466 228 + . . scaffold1391 TRF Tandem_Repeat 141333 141409 145 + . . scaffold1391 TRF Tandem_Repeat 142736 142980 301 + . . scaffold1391 TRF Tandem_Repeat 142985 143247 395 + . . scaffold1391 GLEAN promoter 146909 147908 1 + . ID=CGI_10016933; scaffold1391 GLEAN mRNA 147909 149138 1 + . ID=CGI_10016933; scaffold1391 GLEAN promoter 155248 156247 0.651135 + . ID=CGI_10016934; scaffold1391 GLEAN mRNA 156248 158365 0.651135 + . ID=CGI_10016934; scaffold1391 TRF Tandem_Repeat 163716 163769 108 + . . scaffold1391 TRF Tandem_Repeat 169806 169910 112 + . . scaffold1391 TRF Tandem_Repeat 171084 171177 90 + . . scaffold1391 WUBlastX LINE_RTE-X 171731 172573 238 - . . scaffold1391 WUBlastX LINE_RTE-X 171812 172855 87 - . . scaffold1391 GLEAN mRNA 180812 182470 0.996819 - . ID=CGI_10016935; scaffold1391 GLEAN promoter 182471 183470 0.996819 - . ID=CGI_10016935; scaffold1391 GLEAN promoter 184302 185301 0.761232 + . ID=CGI_10016936; scaffold1391 GLEAN mRNA 185302 187813 0.761232 + . ID=CGI_10016936; scaffold1391 GLEAN promoter 191075 192074 1 + . ID=CGI_10016937; scaffold1391 GLEAN mRNA 192075 193340 1 + . ID=CGI_10016937; scaffold1391 GLEAN mRNA 194282 204252 0.999675 - . ID=CGI_10016938; scaffold1391 GLEAN promoter 197501 198500 0.590501 + . ID=CGI_10016939; scaffold1391 TRF Tandem_Repeat 197599 197653 110 + . . scaffold1391 GLEAN mRNA 198501 208093 0.590501 + . ID=CGI_10016939; scaffold1391 GLEAN promoter 204253 205252 0.999675 - . ID=CGI_10016938; scaffold1391 TRF Tandem_Repeat 204384 204834 498 + . . scaffold1391 TRF Tandem_Repeat 204652 204796 182 + . . scaffold1391 GLEAN mRNA 209541 212286 1 - . ID=CGI_10016940; scaffold1391 GLEAN promoter 212287 213286 1 - . ID=CGI_10016940; scaffold1391 GLEAN promoter 213187 214186 0.999709 + . ID=CGI_10016941; scaffold1391 GLEAN mRNA 214187 216324 0.999709 + . ID=CGI_10016941; scaffold1391 TRF Tandem_Repeat 221011 221905 1392 + . . scaffold1391 GLEAN mRNA 224174 240232 0.998841 - . ID=CGI_10016942; scaffold1391 TRF Tandem_Repeat 224758 225009 450 + . . scaffold1391 TRF Tandem_Repeat 224788 224995 133 + . . scaffold1391 TRF Tandem_Repeat 231195 231544 219 + . . scaffold1391 TRF Tandem_Repeat 232289 232449 161 + . . scaffold1391 GLEAN promoter 239370 240369 0.811687 + . ID=CGI_10016943; scaffold1391 GLEAN promoter 240233 241232 0.998841 - . ID=CGI_10016942; scaffold1391 GLEAN mRNA 240370 265141 0.811687 + . ID=CGI_10016943; scaffold1391 GLEAN promoter 265249 266248 0.999952 + . ID=CGI_10016944; scaffold1391 GLEAN mRNA 266249 267398 0.999952 + . ID=CGI_10016944; scaffold1391 GLEAN promoter 271287 272286 0.999372 + . ID=CGI_10016945; scaffold1391 GLEAN mRNA 272287 272475 0.999372 + . ID=CGI_10016945; scaffold1391 GLEAN promoter 274749 275748 0.717951 + . ID=CGI_10016946; scaffold1391 GLEAN mRNA 275749 300184 0.717951 + . ID=CGI_10016946; scaffold1391 TRF Tandem_Repeat 300079 300317 136 + . . scaffold1391 GLEAN promoter 302442 303441 1 + . ID=CGI_10016947; scaffold1391 GLEAN mRNA 303442 310024 1 + . ID=CGI_10016947; scaffold1391 TRF Tandem_Repeat 303636 303721 163 + . . scaffold1391 WUBlastX LINE_CR1 317666 317728 22 + . . scaffold1391 WUBlastX LINE_RTE-BovB 318390 319802 517 + . . scaffold1391 WUBlastX LINE_RTE-BovB 319210 319920 231 + . . scaffold1391 TRF Tandem_Repeat 328011 328048 76 + . . scaffold1391 TRF Tandem_Repeat 329343 329480 126 + . . scaffold1391 TRF Tandem_Repeat 329346 329500 62 + . . scaffold1391 GLEAN promoter 349298 350297 0.79473 + . ID=CGI_10016948; scaffold1391 GLEAN mRNA 350298 393065 0.79473 + . ID=CGI_10016948; scaffold1391 TRF Tandem_Repeat 354171 354237 127 + . . scaffold1391 TRF Tandem_Repeat 355496 355568 146 + . . scaffold1391 TRF Tandem_Repeat 361242 361495 220 + . . scaffold1391 TRF Tandem_Repeat 361242 361495 125 + . . scaffold1391 TRF Tandem_Repeat 382889 382915 54 + . . scaffold1391 TRF Tandem_Repeat 382953 383016 128 + . . scaffold1391 TRF Tandem_Repeat 386155 386246 139 + . . scaffold1391 GLEAN mRNA 397046 402621 1 - . ID=CGI_10016949; scaffold1391 GLEAN promoter 402622 403621 1 - . ID=CGI_10016949; scaffold1391 TRF Tandem_Repeat 404785 404955 131 + . . scaffold1391 TRF Tandem_Repeat 404791 405037 148 + . . scaffold1391 TRF Tandem_Repeat 409583 409647 62 + . . scaffold1391 TRF Tandem_Repeat 410458 410569 100 + . . scaffold1391 TRF Tandem_Repeat 412744 412860 77 + . . scaffold1391 TRF Tandem_Repeat 430780 431279 799 + . . scaffold1391 TRF Tandem_Repeat 431519 431735 380 + . . scaffold1391 GLEAN promoter 432967 433966 0.999661 + . ID=CGI_10016950; scaffold1391 GLEAN mRNA 433967 435802 0.999661 + . ID=CGI_10016950; scaffold1391 WUBlastX LINE_L1-Tx1 438058 439518 602 - . . scaffold1391 WUBlastX LINE_L1 440313 440357 20 - . . scaffold1391 WUBlastX LINE_L1-Tx1 440825 441376 336 - . . scaffold1391 WUBlastX LINE_L1-Tx1 448642 450102 219 + . . scaffold1391 WUBlastX LINE_L1-Tx1 448642 449553 245 + . . scaffold1391 WUBlastX LINE_L1-Tx1 480045 480308 123 + . . scaffold1391 WUBlastX LINE_L1-Tx1 480084 480368 81 + . . scaffold1391 WUBlastX LINE_L1 480760 480903 25 + . . scaffold1391 WUBlastX LINE_L1-Tx1 480769 480879 27 + . . scaffold1391 WUBlastX LINE_L1-Tx1 480984 481226 20 + . . scaffold1391 WUBlastX LINE_L1-Tx1 481241 481660 70 + . . scaffold1391 TRF Tandem_Repeat 483871 483907 74 + . . scaffold1392 GLEAN mRNA 15 5612 0.99716 - . ID=CGI_10000637; scaffold1392 GLEAN promoter 5613 6612 0.99716 - . ID=CGI_10000637; scaffold1392 WUBlastX LTR_DIRS 6689 8056 732 - . . scaffold1393 GLEAN mRNA 1156 19168 0.544851 - . ID=CGI_10004890; scaffold1393 WUBlastX DNA_Sola 10659 10943 61 + . . scaffold1393 GLEAN promoter 19169 20168 0.544851 - . ID=CGI_10004890; scaffold1393 GLEAN mRNA 38508 48485 0.999996 - . ID=CGI_10004891; scaffold1393 TRF Tandem_Repeat 43233 43288 112 + . . scaffold1393 TRF Tandem_Repeat 43672 43722 50 + . . scaffold1393 GLEAN promoter 48486 49485 0.999996 - . ID=CGI_10004891; scaffold1393 GLEAN promoter 49407 50406 0.996749 + . ID=CGI_10004892; scaffold1393 GLEAN mRNA 50407 52246 0.996749 + . ID=CGI_10004892; scaffold1393 GLEAN mRNA 53674 61463 0.999996 - . ID=CGI_10004893; scaffold1393 GLEAN promoter 61464 62463 0.999996 - . ID=CGI_10004893; scaffold1393 GLEAN promoter 62072 63071 0.961187 + . ID=CGI_10004894; scaffold1393 GLEAN mRNA 63072 67626 0.961187 + . ID=CGI_10004894; scaffold1393 GLEAN promoter 66953 67952 1 + . ID=CGI_10004895; scaffold1393 GLEAN mRNA 67953 72716 1 + . ID=CGI_10004895; scaffold1393 TRF Tandem_Repeat 78724 78771 69 + . . scaffold1393 GLEAN promoter 85324 86323 0.999999 + . ID=CGI_10004896; scaffold1393 GLEAN mRNA 86324 87547 0.999999 + . ID=CGI_10004896; scaffold1393 TRF Tandem_Repeat 88408 88469 124 + . . scaffold1393 GLEAN promoter 89188 90187 0.431205 + . ID=CGI_10004897; scaffold1393 GLEAN mRNA 90188 92364 0.431205 + . ID=CGI_10004897; scaffold1393 TRF Tandem_Repeat 90281 90324 61 + . . scaffold1393 TRF Tandem_Repeat 106252 106332 55 + . . scaffold1393 TRF Tandem_Repeat 106252 106332 55 + . . scaffold1393 TRF Tandem_Repeat 106260 106333 64 + . . scaffold1393 TRF Tandem_Repeat 106274 106316 52 + . . scaffold1394 WUBlastX LTR_DIRS 2039 2320 54 + . . scaffold1394 GLEAN promoter 5070 6069 0.104378 + . ID=CGI_10002919; scaffold1394 GLEAN mRNA 6070 25114 0.104378 + . ID=CGI_10002919; scaffold1394 TRF Tandem_Repeat 27383 28297 1153 + . . scaffold1394 WUBlastX LTR_Ngaro 43373 44140 328 + . . scaffold1394 WUBlastX LINE_L1 47735 49372 381 + . . scaffold1394 WUBlastX LINE_L1-Tx1 47948 49318 902 + . . scaffold1394 WUBlastX LINE_L1 49329 49406 26 + . . scaffold1394 WUBlastX LINE_L1-Tx1 49900 50694 100 + . . scaffold1394 WUBlastX LINE_L1 50035 50727 104 + . . scaffold1394 WUBlastX LINE_L1-Tx1 50209 51846 405 + . . scaffold1394 WUBlastX DNA_hAT 52827 54203 317 + . . scaffold1396 WUBlastX LINE_RTE-X 188 442 44 + . . scaffold1396 WUBlastX LINE_RTE-X 284 421 46 + . . scaffold1396 WUBlastX LINE_RTE-X 427 660 34 + . . scaffold1396 TRF Tandem_Repeat 6168 6197 60 + . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 10556 11266 206 - . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 10688 11248 251 - . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 11250 12419 617 - . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 12413 12598 122 - . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 12579 12761 136 - . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 12764 13726 314 - . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 13701 13916 50 - . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 13927 14271 265 - . . scaffold1396 WUBlastX LTR_Gypsy 13996 14331 156 - . . scaffold1396 WUBlastX LTR_Gypsy-Troyk 14338 14382 25 - . . scaffold1396 WUBlastX DNA_TcMar-Tc1 14850 14945 24 + . . scaffold1396 WUBlastX DNA_TcMar-Tc1 14865 14984 20 + . . scaffold1396 WUBlastX DNA_TcMar-Tc1 15622 16164 31 + . . scaffold1396 WUBlastX DNA_TcMar-Tc1 15814 16194 100 + . . scaffold1396 WUBlastX DNA_TcMar-Tc1 16152 16550 188 + . . scaffold1396 GLEAN promoter 28083 29082 0.464424 + . ID=CGI_10005955; scaffold1396 GLEAN mRNA 29083 32213 0.464424 + . ID=CGI_10005955; scaffold1396 WUBlastX LINE_CR1-L2 39820 39903 45 + . . scaffold1396 WUBlastX LINE_CR1-L2 39823 39870 51 + . . scaffold1396 WUBlastX LINE_CR1-L2 39891 40253 101 + . . scaffold1396 WUBlastX LINE_CR1-L2 39891 40400 70 + . . scaffold1396 TRF Tandem_Repeat 46766 46800 70 + . . scaffold1396 GLEAN promoter 55923 56922 1 + . ID=CGI_10005956; scaffold1396 GLEAN mRNA 56923 57672 1 + . ID=CGI_10005956; scaffold1396 TRF Tandem_Repeat 58264 58323 120 + . . scaffold1396 GLEAN promoter 59561 60560 1 + . ID=CGI_10005957; scaffold1396 GLEAN mRNA 60561 61628 1 + . ID=CGI_10005957; scaffold1396 GLEAN promoter 62964 63963 1 + . ID=CGI_10005958; scaffold1396 GLEAN mRNA 63964 65939 1 + . ID=CGI_10005958; scaffold1396 TRF Tandem_Repeat 66479 66579 78 + . . scaffold1396 TRF Tandem_Repeat 66787 66902 119 + . . scaffold1396 GLEAN promoter 69061 70060 0.999415 + . ID=CGI_10005959; scaffold1396 GLEAN mRNA 70061 70666 0.999415 + . ID=CGI_10005959; scaffold1396 GLEAN promoter 70115 71114 1 + . ID=CGI_10005960; scaffold1396 GLEAN mRNA 71115 71450 1 + . ID=CGI_10005960; scaffold1396 GLEAN mRNA 71367 80106 0.703487 - . ID=CGI_10005961; scaffold1396 TRF Tandem_Repeat 73172 73211 80 + . . scaffold1396 GLEAN promoter 79240 80239 0.842356 + . ID=CGI_10005962; scaffold1396 GLEAN promoter 80107 81106 0.703487 - . ID=CGI_10005961; scaffold1396 GLEAN mRNA 80240 80843 0.842356 + . ID=CGI_10005962; scaffold1396 WUBlastX LINE_R2-Hero 82379 82537 62 - . . scaffold1396 WUBlastX LINE_R2-Hero 82415 82534 62 - . . scaffold1396 WUBlastX LINE_R2-Hero 82601 82996 57 - . . scaffold1396 WUBlastX LINE_R2-Hero 82670 83077 136 - . . scaffold1396 WUBlastX LINE_R2-Hero 82673 83428 50 - . . scaffold1396 WUBlastX LINE_R2-Hero 83418 83564 40 - . . scaffold1396 TRF Tandem_Repeat 84942 84974 50 + . . scaffold1396 TRF Tandem_Repeat 88701 88730 51 + . . scaffold1396 GLEAN mRNA 90407 91025 1 - . ID=CGI_10005963; scaffold1396 GLEAN promoter 91026 92025 1 - . ID=CGI_10005963; scaffold1396 WUBlastX LINE_RTE-X 95170 95385 24 + . . scaffold1396 WUBlastX LINE_RTE-X 96217 96588 73 + . . scaffold1396 WUBlastX LINE_RTE-X 96310 96558 90 + . . scaffold1396 WUBlastX LINE_RTE-X 96558 97157 63 + . . scaffold1396 WUBlastX LINE_RTE-X 96951 97142 77 + . . scaffold1396 WUBlastX LINE_RTE-X 97023 97202 24 + . . scaffold1396 WUBlastX LINE_RTE-X 97475 97546 20 + . . scaffold1396 WUBlastX LINE_RTE-X 97561 97611 20 + . . scaffold1396 TRF Tandem_Repeat 117144 117174 62 + . . scaffold1396 WUBlastX LINE_L2 126925 127161 33 + . . scaffold1396 WUBlastX LINE_L2 127024 127161 39 + . . scaffold1396 WUBlastX LINE_L2 127055 127369 96 + . . scaffold1396 WUBlastX LINE_L2 127127 127654 97 + . . scaffold1396 WUBlastX LINE_L2 127133 127372 110 + . . scaffold1396 WUBlastX LINE_L2 127178 127420 140 + . . scaffold1396 TRF Tandem_Repeat 128715 128750 72 + . . scaffold1396 TRF Tandem_Repeat 134429 135528 1342 + . . scaffold1397 TRF Tandem_Repeat 12834 12867 52 + . . scaffold1397 TRF Tandem_Repeat 19736 19768 66 + . . scaffold1397 GLEAN mRNA 22041 34038 0.684002 - . ID=CGI_10017113; scaffold1397 GLEAN promoter 22367 23366 0.999994 + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 23130 24074 173 + . . scaffold1397 GLEAN mRNA 23367 24092 0.999994 + . ID=CGI_10017114; scaffold1397 WUBlastX LTR_Ngaro 24052 24351 239 + . . scaffold1397 WUBlastX LTR_Ngaro 24351 24869 183 + . . scaffold1397 WUBlastX LTR_Ngaro 24890 25267 169 + . . scaffold1397 GLEAN promoter 34039 35038 0.684002 - . ID=CGI_10017113; scaffold1397 WUBlastX LTR_Gypsy 34822 35010 31 - . . scaffold1397 WUBlastX LTR_Gypsy 34852 35052 50 - . . scaffold1397 WUBlastX LTR_Gypsy 34957 35226 35 - . . scaffold1397 WUBlastX LTR_Gypsy 34957 35283 26 - . . scaffold1397 WUBlastX LTR_Gypsy 35556 36191 72 - . . scaffold1397 WUBlastX LTR_Gypsy 35580 36029 112 - . . scaffold1397 WUBlastX LTR_Ngaro 60847 61701 199 + . . scaffold1397 WUBlastX LTR_Ngaro 61721 62161 231 + . . scaffold1397 WUBlastX LTR_Ngaro 62151 62417 145 + . . scaffold1397 WUBlastX LTR_Ngaro 62422 63141 129 + . . scaffold1397 WUBlastX LTR_Ngaro 62536 63141 140 + . . scaffold1397 WUBlastX DNA_TcMar-Tc2 65810 66055 109 + . . scaffold1397 WUBlastX DNA_TcMar-Tc2 65846 66094 67 + . . scaffold1397 TRF Tandem_Repeat 67163 67188 52 + . . scaffold1397 WUBlastX LTR_Pao 70743 71294 216 + . . scaffold1397 WUBlastX LTR_Pao 71309 71764 70 + . . scaffold1397 WUBlastX LTR_Pao 71770 72369 111 + . . scaffold1397 WUBlastX LTR_Pao 72097 72369 131 + . . scaffold1397 WUBlastX LTR_Pao 72148 72483 55 + . . scaffold1397 WUBlastX LTR_Pao 78031 78621 37 + . . scaffold1397 WUBlastX LTR_Pao 78121 78621 204 + . . scaffold1397 WUBlastX LTR_Pao 78356 78814 175 + . . scaffold1397 WUBlastX LTR_Pao 78487 79017 116 + . . scaffold1397 WUBlastX LTR_Pao 79031 79195 110 + . . scaffold1397 WUBlastX LTR_Pao 79104 79388 125 + . . scaffold1397 WUBlastX LTR_Pao 79194 79385 143 + . . scaffold1397 WUBlastX LTR_Pao 79248 79418 56 + . . scaffold1397 WUBlastX LTR_Pao 80374 80406 23 + . . scaffold1397 WUBlastX DNA_IS4EU 89137 89409 103 + . . scaffold1397 TRF Tandem_Repeat 89437 89483 67 + . . scaffold1397 WUBlastX DNA_IS4EU 91052 91261 59 - . . scaffold1397 WUBlastX DNA_IS4EU 91717 92187 62 - . . scaffold1397 WUBlastX DNA_hAT-Tip100 110523 110867 71 - . . scaffold1397 WUBlastX DNA_hAT-Tip100 110655 110912 48 - . . scaffold1397 WUBlastX DNA_hAT-Tip100? 111791 111994 40 - . . scaffold1397 WUBlastX DNA_hAT-Tip100 112339 112587 64 - . . scaffold1397 WUBlastX DNA_hAT-Tip100 112757 112963 123 - . . scaffold1397 WUBlastX DNA_hAT-Tip100 113175 113360 77 - . . scaffold1397 WUBlastX DNA_hAT-Tip100 113196 113393 28 - . . scaffold1397 WUBlastX DNA_hAT-Tip100 115027 115404 136 - . . scaffold1397 WUBlastX DNA_hAT-Tip100? 115383 115631 52 - . . scaffold1397 WUBlastX LINE_RTE-X 119988 120128 21 - . . scaffold1397 WUBlastX LINE_RTE-X 120146 120304 27 - . . scaffold1397 WUBlastX LINE_RTE-X 120301 120696 120 - . . scaffold1397 WUBlastX LINE_RTE-X 120698 121066 226 - . . scaffold1397 WUBlastX LINE_RTE-X 121062 121217 69 - . . scaffold1397 WUBlastX LINE_RTE-X 121074 121253 49 - . . scaffold1397 TRF Tandem_Repeat 121573 121613 82 + . . scaffold1397 GLEAN promoter 124564 125563 1 + . ID=CGI_10017116; scaffold1397 GLEAN mRNA 125564 125882 1 + . ID=CGI_10017116; scaffold1397 TRF Tandem_Repeat 126998 127106 130 + . . scaffold1397 GLEAN promoter 134079 135078 0.995825 + . ID=CGI_10017117; scaffold1397 WUBlastX DNA_Sola 134947 135828 35 + . . scaffold1397 GLEAN mRNA 135079 136782 0.995825 + . ID=CGI_10017117; scaffold1397 WUBlastX DNA_Sola 135871 136386 31 + . . scaffold1397 WUBlastX DNA_Sola 135952 136779 184 + . . scaffold1397 GLEAN promoter 141564 142563 1 + . ID=CGI_10017118; scaffold1397 GLEAN mRNA 142564 144535 1 + . ID=CGI_10017118; scaffold1397 TRF Tandem_Repeat 149393 149443 102 + . . scaffold1397 WUBlastX LTR_Gypsy 157501 158106 180 + . . scaffold1397 WUBlastX LTR_Gypsy 157654 158253 334 + . . scaffold1397 WUBlastX LTR_Gypsy 157654 158406 94 + . . scaffold1397 WUBlastX LTR_Gypsy 158395 158439 20 + . . scaffold1397 TRF Tandem_Repeat 168292 168339 96 + . . scaffold1397 WUBlastX DNA_IS4EU 169979 170581 23 + . . scaffold1397 WUBlastX DNA_IS4EU 170099 170848 71 + . . scaffold1397 WUBlastX DNA_IS4EU 171043 171186 22 + . . scaffold1397 WUBlastX DNA_IS4EU 171055 171168 25 + . . scaffold1397 TRF Tandem_Repeat 182394 183189 1317 + . . scaffold1397 TRF Tandem_Repeat 183198 183241 61 + . . scaffold1397 GLEAN promoter 196751 197750 0.59015 + . ID=CGI_10017119; scaffold1397 GLEAN mRNA 197751 198101 0.59015 + . ID=CGI_10017119; scaffold1397 GLEAN mRNA 206907 222276 0.644927 - . ID=CGI_10017120; scaffold1397 TRF Tandem_Repeat 209311 209354 54 + . . scaffold1397 WUBlastX DNA_IS4EU 209719 209871 71 - . . scaffold1397 WUBlastX DNA_Kolobok-IS4 209802 210164 141 - . . scaffold1397 WUBlastX DNA_IS4EU 209868 210170 222 - . . scaffold1397 WUBlastX DNA_Kolobok-IS4 210130 210384 44 - . . scaffold1397 WUBlastX DNA_Sola 217787 219592 352 - . . scaffold1397 TRF Tandem_Repeat 221195 221227 66 + . . scaffold1397 GLEAN promoter 222277 223276 0.644927 - . ID=CGI_10017120; scaffold1397 TRF Tandem_Repeat 224215 224443 170 + . . scaffold1397 TRF Tandem_Repeat 242167 243299 1315 + . . scaffold1397 WUBlastX LINE_CR1 245122 245448 87 + . . scaffold1397 WUBlastX LINE_CR1 245200 245490 121 + . . scaffold1397 WUBlastX LINE_CR1 245203 245595 100 + . . scaffold1397 WUBlastX LINE_CR1 245203 245448 152 + . . scaffold1397 WUBlastX LINE_Penelope 249926 250150 85 - . . scaffold1397 TRF Tandem_Repeat 267422 267480 64 + . . scaffold1397 WUBlastX LINE_L1-Tx1 267863 268963 173 - . . scaffold1397 WUBlastX LINE_L1 268951 269415 45 - . . scaffold1397 WUBlastX LINE_L1-Tx1 268984 269322 154 - . . scaffold1397 WUBlastX DNA_TcMar-Fot1 274037 274375 100 + . . scaffold1397 WUBlastX DNA_TcMar-Fot1 274407 274943 64 + . . scaffold1397 GLEAN promoter 279234 280233 1 + . ID=CGI_10017121; scaffold1397 WUBlastX DNA_hAT-Tip100 280006 280527 75 + . . scaffold1397 GLEAN mRNA 280234 280587 1 + . ID=CGI_10017121; scaffold1397 TRF Tandem_Repeat 282654 282790 85 + . . scaffold1397 WUBlastX DNA_Harbinger 285873 286358 102 - . . scaffold1397 WUBlastX DNA_Harbinger 285981 286592 100 - . . scaffold1397 WUBlastX LTR_Gypsy 287022 289283 1869 - . . scaffold1397 WUBlastX DNA_Sola 306534 306719 25 - . . scaffold1397 WUBlastX DNA_Sola 306606 306716 52 - . . scaffold1397 WUBlastX DNA_Sola 306950 307687 200 - . . scaffold1397 WUBlastX DNA_Sola 307579 308073 70 - . . scaffold1397 WUBlastX DNA_Sola 307585 307968 138 - . . scaffold1397 WUBlastX DNA_Sola 307828 308139 41 - . . scaffold1397 WUBlastX DNA_Sola 308034 308330 32 - . . scaffold1397 TRF Tandem_Repeat 310177 311137 1374 + . . scaffold1397 TRF Tandem_Repeat 311941 311996 76 + . . scaffold1397 TRF Tandem_Repeat 311941 312000 84 + . . scaffold1397 TRF Tandem_Repeat 311941 312003 72 + . . scaffold1397 TRF Tandem_Repeat 312027 312986 1446 + . . scaffold1397 WUBlastX LINE_CR1-L2 318292 318384 41 - . . scaffold1397 WUBlastX LINE_L2 318295 318402 27 - . . scaffold1397 WUBlastX LINE_L2 318404 318562 44 - . . scaffold1397 TRF Tandem_Repeat 335321 335355 70 + . . scaffold1397 TRF Tandem_Repeat 335361 336223 1261 + . . scaffold1397 GLEAN promoter 338676 339675 1 + . ID=CGI_10017122; scaffold1397 GLEAN mRNA 339676 345561 1 + . ID=CGI_10017122; scaffold1397 TRF Tandem_Repeat 342525 342553 58 + . . scaffold1397 GLEAN mRNA 346372 357730 0.949523 - . ID=CGI_10017123; scaffold1397 TRF Tandem_Repeat 347224 347285 115 + . . scaffold1397 GLEAN promoter 357731 358730 0.949523 - . ID=CGI_10017123; scaffold1397 GLEAN mRNA 363862 367082 0.733296 - . ID=CGI_10017124; scaffold1397 GLEAN promoter 367083 368082 0.733296 - . ID=CGI_10017124; scaffold1397 GLEAN mRNA 393954 426485 0.988255 - . ID=CGI_10017125; scaffold1397 GLEAN promoter 409059 410058 0.649783 + . ID=CGI_10017126; scaffold1397 GLEAN mRNA 410059 426588 0.649783 + . ID=CGI_10017126; scaffold1397 GLEAN promoter 425917 426916 1 + . ID=CGI_10017127; scaffold1397 GLEAN promoter 426486 427485 0.988255 - . ID=CGI_10017125; scaffold1397 GLEAN mRNA 426917 436521 1 + . ID=CGI_10017127; scaffold1397 TRF Tandem_Repeat 428583 428775 296 + . . scaffold1397 TRF Tandem_Repeat 432560 432719 115 + . . scaffold1397 TRF Tandem_Repeat 433284 433820 975 + . . scaffold1397 GLEAN promoter 438967 439966 0.499998 + . ID=CGI_10017128; scaffold1397 GLEAN mRNA 439967 450571 0.499998 + . ID=CGI_10017128; scaffold1397 TRF Tandem_Repeat 446789 446946 145 + . . scaffold1397 GLEAN mRNA 447381 454049 0.941831 - . ID=CGI_10017129; scaffold1397 TRF Tandem_Repeat 449517 450345 611 + . . scaffold1397 TRF Tandem_Repeat 449542 450390 700 + . . scaffold1397 TRF Tandem_Repeat 449618 450066 77 + . . scaffold1397 TRF Tandem_Repeat 452044 452317 395 + . . scaffold1397 GLEAN promoter 454050 455049 0.941831 - . ID=CGI_10017129; scaffold1397 GLEAN mRNA 454990 461128 0.999996 - . ID=CGI_10017130; scaffold1397 GLEAN promoter 461129 462128 0.999996 - . ID=CGI_10017130; scaffold1397 GLEAN mRNA 463072 470406 0.999395 - . ID=CGI_10017131; scaffold1397 TRF Tandem_Repeat 464717 464749 66 + . . scaffold1397 TRF Tandem_Repeat 469061 469124 83 + . . scaffold1397 TRF Tandem_Repeat 469101 469339 111 + . . scaffold1397 TRF Tandem_Repeat 469101 469339 71 + . . scaffold1397 GLEAN promoter 470233 471232 0.371399 + . ID=CGI_10017132; scaffold1397 GLEAN promoter 470407 471406 0.999395 - . ID=CGI_10017131; scaffold1397 GLEAN mRNA 471233 474530 0.371399 + . ID=CGI_10017132; scaffold1397 GLEAN promoter 477639 478638 1 + . ID=CGI_10017133; scaffold1397 GLEAN mRNA 478639 489866 1 + . ID=CGI_10017133; scaffold1397 TRF Tandem_Repeat 492268 492330 126 + . . scaffold1399 GLEAN mRNA 4147 4557 0.776794 - . ID=CGI_10007045; scaffold1399 GLEAN promoter 4558 5557 0.776794 - . ID=CGI_10007045; scaffold1399 WUBlastX DNA_Sola 4675 4914 42 - . . scaffold1399 WUBlastX DNA_Sola 5236 6015 114 - . . scaffold1399 GLEAN promoter 13248 14247 0.999609 + . ID=CGI_10007046; scaffold1399 GLEAN mRNA 14248 15312 0.999609 + . ID=CGI_10007046; scaffold1399 GLEAN promoter 15276 16275 0.996608 + . ID=CGI_10007047; scaffold1399 GLEAN mRNA 16276 39140 0.996608 + . ID=CGI_10007047; scaffold1399 TRF Tandem_Repeat 22231 22393 125 + . . scaffold1399 TRF Tandem_Repeat 29035 29088 65 + . . scaffold1399 WUBlastX LINE_L1 33397 33723 24 - . . scaffold1399 WUBlastX LINE_L1-Tx1 33517 33738 25 - . . scaffold1399 WUBlastX LINE_L1 33929 34096 31 - . . scaffold1399 GLEAN promoter 42432 43431 0.575752 + . ID=CGI_10007048; scaffold1399 GLEAN mRNA 43432 61883 0.575752 + . ID=CGI_10007048; scaffold1399 TRF Tandem_Repeat 47507 47597 182 + . . scaffold1399 TRF Tandem_Repeat 56157 56182 52 + . . scaffold1399 GLEAN promoter 63809 64808 0.728009 + . ID=CGI_10007049; scaffold1399 GLEAN mRNA 64809 87156 0.728009 + . ID=CGI_10007049; scaffold1399 TRF Tandem_Repeat 67046 67426 509 + . . scaffold1399 TRF Tandem_Repeat 67061 67490 331 + . . scaffold1399 TRF Tandem_Repeat 67068 67490 402 + . . scaffold1399 TRF Tandem_Repeat 68167 68412 361 + . . scaffold1399 TRF Tandem_Repeat 74857 76104 1898 + . . scaffold1399 TRF Tandem_Repeat 90737 90803 55 + . . scaffold1399 TRF Tandem_Repeat 92298 92364 89 + . . scaffold1399 GLEAN promoter 94731 95730 0.470575 + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 94736 94790 110 + . . scaffold1399 TRF Tandem_Repeat 94968 94997 60 + . . scaffold1399 TRF Tandem_Repeat 94968 95026 64 + . . scaffold1399 TRF Tandem_Repeat 95521 95587 89 + . . scaffold1399 GLEAN mRNA 95731 121782 0.470575 + . ID=CGI_10007050; scaffold1399 TRF Tandem_Repeat 101779 101824 92 + . . scaffold1399 TRF Tandem_Repeat 105779 107504 2416 + . . scaffold1399 TRF Tandem_Repeat 105779 107504 2377 + . . scaffold1399 TRF Tandem_Repeat 109416 109946 794 + . . scaffold1399 TRF Tandem_Repeat 111135 111175 82 + . . scaffold1399 WUBlastX LTR_DIRS 117515 118438 596 - . . scaffold1399 WUBlastX LTR_DIRS 118333 120354 1398 - . . scaffold1399 WUBlastX LTR_Gypsy 119512 120546 87 - . . scaffold1399 WUBlastX LTR_DIRS 120730 121098 84 - . . scaffold1399 GLEAN mRNA 122901 124052 1 - . ID=CGI_10007051; scaffold1399 GLEAN promoter 124053 125052 1 - . ID=CGI_10007051; scaffold1399 TRF Tandem_Repeat 124879 124916 76 + . . scaffold1399 WUBlastX LINE_L1-Tx1 126694 127668 115 - . . scaffold1399 WUBlastX LINE_L1-Tx1 126964 127668 180 - . . scaffold1399 GLEAN promoter 129415 130414 0.890929 + . ID=CGI_10007052; scaffold1399 GLEAN mRNA 130415 132715 0.890929 + . ID=CGI_10007052; scaffold1399 GLEAN mRNA 134498 135229 0.866653 - . ID=CGI_10007053; scaffold1399 GLEAN promoter 134868 135867 0.931927 + . ID=CGI_10007054; scaffold1399 GLEAN promoter 135230 136229 0.866653 - . ID=CGI_10007053; scaffold1399 GLEAN mRNA 135868 138338 0.931927 + . ID=CGI_10007054; scaffold1399 GLEAN mRNA 140872 142077 0.999585 - . ID=CGI_10007055; scaffold1399 GLEAN promoter 142078 143077 0.999585 - . ID=CGI_10007055; scaffold1399 GLEAN mRNA 142476 145484 0.999296 - . ID=CGI_10007056; scaffold1399 GLEAN promoter 145485 146484 0.999296 - . ID=CGI_10007056; scaffold1399 GLEAN promoter 146816 147815 0.65061 + . ID=CGI_10007057; scaffold1399 GLEAN mRNA 147816 165074 0.65061 + . ID=CGI_10007057; scaffold1399 TRF Tandem_Repeat 148857 148891 70 + . . scaffold1399 TRF Tandem_Repeat 151473 151508 72 + . . scaffold1399 TRF Tandem_Repeat 152326 153121 1177 + . . scaffold1399 TRF Tandem_Repeat 158737 158776 80 + . . scaffold1399 GLEAN mRNA 167918 169579 0.999983 - . ID=CGI_10007058; scaffold1399 GLEAN promoter 169580 169737 0.999983 - . ID=CGI_10007058; scaffold140 GLEAN mRNA 45423 78027 0.362757 - . ID=CGI_10020123; scaffold140 TRF Tandem_Repeat 72457 72513 114 + . . scaffold140 WUBlastX LINE_L1-Tx1 72890 74050 138 + . . scaffold140 WUBlastX LINE_L1-Tx1 73034 74011 258 + . . scaffold140 WUBlastX LINE_L1-Tx1 73921 74118 77 + . . scaffold140 WUBlastX LINE_L1-Tx1 74133 74609 73 + . . scaffold140 GLEAN promoter 78028 79027 0.362757 - . ID=CGI_10020123; scaffold140 WUBlastX LINE_RTE-X 95097 95564 131 + . . scaffold140 WUBlastX LINE_RTE-X 95614 95919 62 + . . scaffold140 WUBlastX LINE_RTE-X 95626 96117 20 + . . scaffold140 WUBlastX LINE_RTE-X 95626 95973 49 + . . scaffold140 WUBlastX LINE_RTE-X 96786 97364 103 + . . scaffold140 WUBlastX LINE_RTE-X 97029 97451 107 + . . scaffold140 WUBlastX LINE_CR1-L2 97366 97470 34 + . . scaffold140 WUBlastX LINE_RTE-X 99506 99712 80 + . . scaffold140 WUBlastX LINE_RTE-X 99539 99712 113 + . . scaffold140 WUBlastX LINE_RTE-X 99720 100376 291 + . . scaffold140 WUBlastX LINE_RTE-X 99723 101126 169 + . . scaffold140 WUBlastX LINE_CR1 112343 112408 20 + . . scaffold140 WUBlastX LINE_L2 112409 112897 146 + . . scaffold140 WUBlastX LINE_L2 112544 112906 202 + . . scaffold140 WUBlastX LINE_L2 112562 113038 199 + . . scaffold140 WUBlastX LINE_L2 112867 113211 51 + . . scaffold140 WUBlastX LINE_L2 112921 113097 77 + . . scaffold140 WUBlastX LINE_L2 112921 113298 21 + . . scaffold140 WUBlastX LINE_L2 112921 113139 71 + . . scaffold140 WUBlastX LINE_L2 113103 113240 28 + . . scaffold140 TRF Tandem_Repeat 114200 114268 138 + . . scaffold140 TRF Tandem_Repeat 121420 121460 82 + . . scaffold140 WUBlastX LTR_Ngaro 136523 136657 45 + . . scaffold140 WUBlastX LTR_Ngaro 136801 136983 59 + . . scaffold140 TRF Tandem_Repeat 148269 148369 112 + . . scaffold140 TRF Tandem_Repeat 148813 148864 104 + . . scaffold140 TRF Tandem_Repeat 149283 149313 53 + . . scaffold140 TRF Tandem_Repeat 149945 150076 102 + . . scaffold140 GLEAN mRNA 152858 172100 0.399475 - . ID=CGI_10020124; scaffold140 TRF Tandem_Repeat 160308 160339 55 + . . scaffold140 TRF Tandem_Repeat 160451 161198 979 + . . scaffold140 TRF Tandem_Repeat 169942 170090 120 + . . scaffold140 TRF Tandem_Repeat 170196 170328 151 + . . scaffold140 GLEAN promoter 172101 173100 0.399475 - . ID=CGI_10020124; scaffold140 TRF Tandem_Repeat 174369 174742 168 + . . scaffold140 TRF Tandem_Repeat 174370 174691 187 + . . scaffold140 TRF Tandem_Repeat 174370 174742 281 + . . scaffold140 TRF Tandem_Repeat 175158 175426 238 + . . scaffold140 GLEAN promoter 176772 177771 0.998077 + . ID=CGI_10020125; scaffold140 GLEAN mRNA 177772 178434 0.998077 + . ID=CGI_10020125; scaffold140 GLEAN mRNA 182002 193793 0.762382 - . ID=CGI_10020126; scaffold140 GLEAN promoter 193606 194605 0.869264 + . ID=CGI_10020127; scaffold140 GLEAN promoter 193794 194793 0.762382 - . ID=CGI_10020126; scaffold140 GLEAN mRNA 194606 204346 0.869264 + . ID=CGI_10020127; scaffold140 GLEAN promoter 212601 213600 0.891303 + . ID=CGI_10020128; scaffold140 TRF Tandem_Repeat 212971 213064 125 + . . scaffold140 TRF Tandem_Repeat 213113 213211 182 + . . scaffold140 GLEAN mRNA 213601 222884 0.891303 + . ID=CGI_10020128; scaffold140 TRF Tandem_Repeat 227817 228012 329 + . . scaffold140 TRF Tandem_Repeat 233361 233495 148 + . . scaffold140 TRF Tandem_Repeat 233361 233493 173 + . . scaffold140 GLEAN promoter 233595 234594 0.998901 + . ID=CGI_10020129; scaffold140 GLEAN mRNA 234595 236022 0.998901 + . ID=CGI_10020129; scaffold140 GLEAN promoter 235209 236208 0.999335 + . ID=CGI_10020130; scaffold140 GLEAN mRNA 236209 237759 0.999335 + . ID=CGI_10020130; scaffold140 TRF Tandem_Repeat 243810 243837 56 + . . scaffold140 TRF Tandem_Repeat 258923 258979 114 + . . scaffold140 GLEAN mRNA 261485 263063 0.805673 - . ID=CGI_10020131; scaffold140 GLEAN promoter 263064 264063 0.805673 - . ID=CGI_10020131; scaffold140 GLEAN promoter 265613 266612 0.999661 + . ID=CGI_10020132; scaffold140 GLEAN mRNA 266613 270883 0.999661 + . ID=CGI_10020132; scaffold140 TRF Tandem_Repeat 268532 268579 60 + . . scaffold140 TRF Tandem_Repeat 268533 268583 61 + . . scaffold140 TRF Tandem_Repeat 268549 268598 54 + . . scaffold140 GLEAN mRNA 274556 300501 0.732841 - . ID=CGI_10020133; scaffold140 TRF Tandem_Repeat 293694 293836 140 + . . scaffold140 GLEAN promoter 300502 301501 0.732841 - . ID=CGI_10020133; scaffold140 TRF Tandem_Repeat 308462 308526 123 + . . scaffold140 TRF Tandem_Repeat 310276 310325 100 + . . scaffold140 TRF Tandem_Repeat 311741 311775 70 + . . scaffold140 GLEAN mRNA 314931 325697 0.976053 - . ID=CGI_10020134; scaffold140 WUBlastX RC_Helitron 315413 315553 24 - . . scaffold140 GLEAN promoter 325698 326697 0.976053 - . ID=CGI_10020134; scaffold140 TRF Tandem_Repeat 326588 326624 56 + . . scaffold140 GLEAN promoter 326930 327929 0.379108 + . ID=CGI_10020135; scaffold140 TRF Tandem_Repeat 327156 327233 147 + . . scaffold140 GLEAN mRNA 327930 353126 0.379108 + . ID=CGI_10020135; scaffold140 WUBlastX LINE_L2 343886 344263 122 - . . scaffold140 GLEAN mRNA 344940 369951 0.671174 - . ID=CGI_10020136; scaffold140 WUBlastX LINE_CR1-L2 344946 345086 56 - . . scaffold140 WUBlastX LINE_CR1-L2 345064 345348 74 - . . scaffold140 WUBlastX LINE_L2 345380 345592 54 - . . scaffold140 WUBlastX LINE_CR1 345440 345625 61 - . . scaffold140 WUBlastX LINE_CR1-L2 345473 345631 100 - . . scaffold140 WUBlastX LINE_L2 345473 345808 72 - . . scaffold140 WUBlastX LINE_L2 346034 346096 21 - . . scaffold140 TRF Tandem_Repeat 363727 363780 108 + . . scaffold140 WUBlastX LINE_L1-Tx1 364872 365246 96 - . . scaffold140 WUBlastX LINE_L1-Tx1 365261 365413 20 - . . scaffold140 WUBlastX LINE_L1-Tx1 365294 365515 45 - . . scaffold140 WUBlastX LINE_L1-Tx1 365340 366320 151 - . . scaffold140 WUBlastX LINE_L1-Tx1 365526 366317 385 - . . scaffold140 WUBlastX LINE_CR1 365892 366533 53 - . . scaffold140 WUBlastX LINE_L1 365916 366404 87 - . . scaffold140 WUBlastX LINE_L2 366854 366943 26 - . . scaffold140 GLEAN promoter 369952 370951 0.671174 - . ID=CGI_10020136; scaffold140 TRF Tandem_Repeat 370791 370829 78 + . . scaffold140 WUBlastX LINE_L1-Tx1 373310 374488 359 - . . scaffold140 WUBlastX LINE_L1-Tx1 374487 374855 113 - . . scaffold140 WUBlastX LINE_L1 374553 374930 24 - . . scaffold140 WUBlastX LINE_L2 375377 375631 58 - . . scaffold140 GLEAN mRNA 375764 376111 0.999372 - . ID=CGI_10020137; scaffold140 GLEAN promoter 376112 377111 0.999372 - . ID=CGI_10020137; scaffold140 WUBlastX DNA_TcMar-Marin 380385 380471 35 - . . scaffold140 WUBlastX DNA_TcMar-Tc1 380437 380646 45 - . . scaffold140 WUBlastX DNA_TcMar-Tc1 380485 380604 56 - . . scaffold140 WUBlastX DNA_TcMar-Tc1 380485 380721 42 - . . scaffold140 WUBlastX DNA_TcMar-Tc1 380500 380598 65 - . . scaffold140 WUBlastX DNA_TcMar-Tc1 380506 380640 53 - . . scaffold140 WUBlastX DNA_TcMar-Tc1 380714 381088 87 - . . scaffold140 TRF Tandem_Repeat 381539 381568 60 + . . scaffold140 GLEAN promoter 409478 410477 0.999869 + . ID=CGI_10020138; scaffold140 GLEAN mRNA 410478 412939 0.999869 + . ID=CGI_10020138; scaffold140 GLEAN mRNA 416366 421157 1 - . ID=CGI_10020139; scaffold140 GLEAN promoter 421158 422157 1 - . ID=CGI_10020139; scaffold140 GLEAN mRNA 423304 425070 0.999965 - . ID=CGI_10020140; scaffold140 GLEAN promoter 425071 426070 0.999965 - . ID=CGI_10020140; scaffold140 TRF Tandem_Repeat 446018 446060 86 + . . scaffold140 TRF Tandem_Repeat 450755 450849 163 + . . scaffold140 GLEAN promoter 451641 452640 0.836212 + . ID=CGI_10020141; scaffold140 GLEAN mRNA 452641 454790 0.836212 + . ID=CGI_10020141; scaffold140 TRF Tandem_Repeat 462469 462691 306 + . . scaffold140 TRF Tandem_Repeat 463188 463621 620 + . . scaffold140 TRF Tandem_Repeat 463188 463621 809 + . . scaffold140 TRF Tandem_Repeat 469435 469574 194 + . . scaffold140 GLEAN mRNA 471136 472137 1 - . ID=CGI_10020142; scaffold140 GLEAN promoter 472138 473137 1 - . ID=CGI_10020142; scaffold140 TRF Tandem_Repeat 478053 478079 54 + . . scaffold140 TRF Tandem_Repeat 478924 478983 120 + . . scaffold140 TRF Tandem_Repeat 479634 479663 60 + . . scaffold140 TRF Tandem_Repeat 480599 480677 142 + . . scaffold140 TRF Tandem_Repeat 481789 481822 68 + . . scaffold140 GLEAN promoter 484436 485435 1 + . ID=CGI_10020143; scaffold140 GLEAN mRNA 485436 491553 1 + . ID=CGI_10020143; scaffold140 GLEAN promoter 497381 498380 0.996998 + . ID=CGI_10020144; scaffold140 GLEAN mRNA 498381 510630 0.996998 + . ID=CGI_10020144; scaffold140 TRF Tandem_Repeat 517714 517892 288 + . . scaffold140 TRF Tandem_Repeat 521696 521743 96 + . . scaffold140 TRF Tandem_Repeat 525662 525953 413 + . . scaffold140 TRF Tandem_Repeat 525665 526127 412 + . . scaffold140 TRF Tandem_Repeat 525665 526905 334 + . . scaffold140 TRF Tandem_Repeat 525665 526905 264 + . . scaffold140 TRF Tandem_Repeat 526445 527012 342 + . . scaffold140 TRF Tandem_Repeat 527842 527966 119 + . . scaffold140 TRF Tandem_Repeat 529594 529911 243 + . . scaffold140 TRF Tandem_Repeat 532008 532040 66 + . . scaffold140 TRF Tandem_Repeat 532040 532093 108 + . . scaffold140 GLEAN promoter 534818 535817 0.900397 + . ID=CGI_10020145; scaffold140 GLEAN mRNA 535818 537081 0.900397 + . ID=CGI_10020145; scaffold140 TRF Tandem_Repeat 541098 541132 52 + . . scaffold140 GLEAN promoter 557112 558111 0.999281 + . ID=CGI_10020146; scaffold140 GLEAN mRNA 558112 578994 0.999281 + . ID=CGI_10020146; scaffold140 TRF Tandem_Repeat 559864 559925 106 + . . scaffold140 TRF Tandem_Repeat 562767 563381 775 + . . scaffold140 TRF Tandem_Repeat 596619 596688 104 + . . scaffold140 TRF Tandem_Repeat 596619 596681 72 + . . scaffold140 TRF Tandem_Repeat 596693 597366 852 + . . scaffold140 GLEAN promoter 596889 597888 1 + . ID=CGI_10020147; scaffold140 GLEAN mRNA 597889 605894 1 + . ID=CGI_10020147; scaffold140 TRF Tandem_Repeat 602488 603288 1280 + . . scaffold140 GLEAN mRNA 609283 611992 1 - . ID=CGI_10020148; scaffold140 TRF Tandem_Repeat 609766 610038 483 + . . scaffold140 GLEAN promoter 611993 612992 1 - . ID=CGI_10020148; scaffold140 GLEAN mRNA 614371 633766 0.462581 - . ID=CGI_10020149; scaffold140 TRF Tandem_Repeat 614634 614660 54 + . . scaffold140 TRF Tandem_Repeat 617913 617974 124 + . . scaffold140 TRF Tandem_Repeat 621836 621905 124 + . . scaffold140 TRF Tandem_Repeat 622421 622463 86 + . . scaffold140 TRF Tandem_Repeat 624357 624382 52 + . . scaffold140 GLEAN promoter 624412 625411 0.999372 + . ID=CGI_10020150; scaffold140 TRF Tandem_Repeat 624809 624967 189 + . . scaffold140 GLEAN promoter 624871 625870 0.999447 + . ID=CGI_10020151; scaffold140 GLEAN mRNA 625412 625636 0.999372 + . ID=CGI_10020150; scaffold140 GLEAN mRNA 625871 627079 0.999447 + . ID=CGI_10020151; scaffold140 TRF Tandem_Repeat 628330 628389 75 + . . scaffold140 GLEAN promoter 633350 634349 1 + . ID=CGI_10020152; scaffold140 GLEAN promoter 633767 634766 0.462581 - . ID=CGI_10020149; scaffold140 GLEAN mRNA 634350 634907 1 + . ID=CGI_10020152; scaffold1400 GLEAN mRNA 63 1123 0.558234 - . ID=CGI_10001647; scaffold1400 GLEAN promoter 1124 2123 0.558234 - . ID=CGI_10001647; scaffold1400 WUBlastX LINE_RTE-X 2177 2812 142 + . . scaffold1400 WUBlastX LINE_RTE-BovB 2838 2888 20 + . . scaffold1400 WUBlastX LINE_RTE-X 2884 3561 165 + . . scaffold1400 WUBlastX LINE_RTE-X 3569 3838 79 + . . scaffold1400 GLEAN mRNA 6197 9008 0.633403 - . ID=CGI_10001648; scaffold1400 GLEAN promoter 8622 9621 0.66717 + . ID=CGI_10001649; scaffold1400 GLEAN promoter 9009 10008 0.633403 - . ID=CGI_10001648; scaffold1400 GLEAN mRNA 9622 15175 0.66717 + . ID=CGI_10001649; scaffold1400 GLEAN mRNA 20237 28518 1 - . ID=CGI_10001650; scaffold1400 GLEAN promoter 28519 28786 1 - . ID=CGI_10001650; scaffold1401 GLEAN mRNA 431 6619 0.997038 - . ID=CGI_10001278; scaffold1401 TRF Tandem_Repeat 2067 2104 67 + . . scaffold1401 TRF Tandem_Repeat 2920 2945 52 + . . scaffold1401 WUBlastX LINE_RTE-X 2960 3214 55 - . . scaffold1401 WUBlastX LINE_RTE-X 3211 4437 616 - . . scaffold1401 WUBlastX LINE_RTE-BovB 4183 4497 54 - . . scaffold1401 WUBlastX LINE_RTE-X 4430 4639 38 - . . scaffold1401 WUBlastX LINE_RTE-X 4653 5426 148 - . . scaffold1401 WUBlastX LINE_I 5408 5554 22 - . . scaffold1401 WUBlastX LINE_RTE-X 5468 6031 47 - . . scaffold1401 WUBlastX LINE_L2 6296 6634 59 - . . scaffold1401 WUBlastX LINE_L2 6338 6622 84 - . . scaffold1401 GLEAN promoter 6620 7619 0.997038 - . ID=CGI_10001278; scaffold1401 TRF Tandem_Repeat 9250 9280 53 + . . scaffold1401 GLEAN mRNA 12264 16029 0.999547 - . ID=CGI_10001279; scaffold1401 GLEAN promoter 16030 17029 0.999547 - . ID=CGI_10001279; scaffold1401 GLEAN mRNA 16303 17417 0.99876 - . ID=CGI_10001280; scaffold1401 GLEAN promoter 17418 18193 0.99876 - . ID=CGI_10001280; scaffold1402 TRF Tandem_Repeat 2582 2635 108 + . . scaffold1402 GLEAN mRNA 8431 25423 0.989725 - . ID=CGI_10017571; scaffold1402 GLEAN promoter 25424 26423 0.989725 - . ID=CGI_10017571; scaffold1402 WUBlastX LTR_Gypsy-Cigr 31160 31735 196 + . . scaffold1402 GLEAN mRNA 33233 45215 0.260031 - . ID=CGI_10017572; scaffold1402 TRF Tandem_Repeat 35224 35261 58 + . . scaffold1402 TRF Tandem_Repeat 40728 41418 480 + . . scaffold1402 TRF Tandem_Repeat 40733 41004 454 + . . scaffold1402 TRF Tandem_Repeat 40794 41401 430 + . . scaffold1402 TRF Tandem_Repeat 40989 41338 619 + . . scaffold1402 GLEAN promoter 44330 45329 1 + . ID=CGI_10017573; scaffold1402 GLEAN promoter 45216 46215 0.260031 - . ID=CGI_10017572; scaffold1402 GLEAN mRNA 45330 46691 1 + . ID=CGI_10017573; scaffold1402 TRF Tandem_Repeat 48064 49002 740 + . . scaffold1402 TRF Tandem_Repeat 50461 50809 409 + . . scaffold1402 GLEAN mRNA 52977 75391 1 - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 64753 64816 74 + . . scaffold1402 TRF Tandem_Repeat 64756 64816 95 + . . scaffold1402 TRF Tandem_Repeat 65649 65717 75 + . . scaffold1402 TRF Tandem_Repeat 73640 73741 131 + . . scaffold1402 TRF Tandem_Repeat 73859 73901 86 + . . scaffold1402 TRF Tandem_Repeat 74219 74271 106 + . . scaffold1402 GLEAN promoter 75392 76391 1 - . ID=CGI_10017574; scaffold1402 TRF Tandem_Repeat 76337 76390 55 + . . scaffold1402 TRF Tandem_Repeat 76337 76390 60 + . . scaffold1402 GLEAN mRNA 77852 81164 1 - . ID=CGI_10017575; scaffold1402 GLEAN promoter 81165 82164 1 - . ID=CGI_10017575; scaffold1402 GLEAN mRNA 83671 93881 0.902989 - . ID=CGI_10017576; scaffold1402 TRF Tandem_Repeat 86632 86681 93 + . . scaffold1402 TRF Tandem_Repeat 90403 90632 237 + . . scaffold1402 GLEAN promoter 93882 94881 0.902989 - . ID=CGI_10017576; scaffold1402 TRF Tandem_Repeat 99414 99888 567 + . . scaffold1402 TRF Tandem_Repeat 99415 100180 602 + . . scaffold1402 TRF Tandem_Repeat 99415 100180 640 + . . scaffold1402 TRF Tandem_Repeat 99416 100176 550 + . . scaffold1402 TRF Tandem_Repeat 99858 100049 179 + . . scaffold1402 TRF Tandem_Repeat 101187 101211 50 + . . scaffold1402 TRF Tandem_Repeat 102238 102286 66 + . . scaffold1402 TRF Tandem_Repeat 102371 102554 179 + . . scaffold1402 GLEAN promoter 107415 108414 0.319098 + . ID=CGI_10017577; scaffold1402 GLEAN mRNA 108415 116057 0.319098 + . ID=CGI_10017577; scaffold1402 TRF Tandem_Repeat 112108 112147 80 + . . scaffold1402 GLEAN mRNA 121442 122683 0.999999 - . ID=CGI_10017578; scaffold1402 GLEAN promoter 122684 123683 0.999999 - . ID=CGI_10017578; scaffold1402 GLEAN mRNA 130146 131402 0.998077 - . ID=CGI_10017579; scaffold1402 GLEAN promoter 131403 132402 0.998077 - . ID=CGI_10017579; scaffold1402 TRF Tandem_Repeat 132977 133092 173 + . . scaffold1402 WUBlastX LINE_L1 133608 133706 37 + . . scaffold1402 WUBlastX LINE_L1-Tx1 133780 133881 32 + . . scaffold1402 WUBlastX LINE_L1-Tx1 134588 134716 39 + . . scaffold1402 WUBlastX LINE_L1-Tx1 134609 134707 71 + . . scaffold1402 WUBlastX LINE_L1-Tx1 134713 134886 24 + . . scaffold1402 WUBlastX LINE_L1-Tx1 134937 135086 59 + . . scaffold1402 WUBlastX LINE_L1-Tx1 136347 136538 32 + . . scaffold1402 WUBlastX LINE_L1-Tx1 136422 136538 36 + . . scaffold1402 WUBlastX LINE_L1-Tx1 136422 136577 27 + . . scaffold1402 WUBlastX LINE_L1 136449 136526 43 + . . scaffold1402 WUBlastX LINE_L1-Tx1 136672 136782 25 + . . scaffold1402 WUBlastX LINE_L1-Tx1 136782 136919 39 + . . scaffold1402 WUBlastX LINE_L1-Tx1 136815 136919 73 + . . scaffold1402 WUBlastX LINE_L1-Tx1 136907 138229 273 + . . scaffold1402 WUBlastX LINE_L1-Tx1 138235 138921 62 + . . scaffold1402 WUBlastX LINE_L1-Tx1 138529 138921 77 + . . scaffold1402 WUBlastX LTR_DIRS 139137 139283 41 - . . scaffold1402 WUBlastX LINE_L2 144433 145791 421 - . . scaffold1402 WUBlastX LINE_L2 144460 146040 266 - . . scaffold1402 GLEAN mRNA 154950 158880 0.996561 - . ID=CGI_10017580; scaffold1402 WUBlastX LINE_RTE-X 157826 158209 62 + . . scaffold1402 WUBlastX LINE_RTE-X 157835 158080 73 + . . scaffold1402 GLEAN promoter 158881 159880 0.996561 - . ID=CGI_10017580; scaffold1402 WUBlastX LINE_L1-Tx1 161882 162748 21 - . . scaffold1402 WUBlastX LINE_L1-Tx1 161891 162532 111 - . . scaffold1402 WUBlastX LINE_L1-Tx1 162994 163953 475 - . . scaffold1402 WUBlastX LINE_L1-Tx1 163931 164494 154 - . . scaffold1402 WUBlastX LINE_L1-Tx1 163946 164368 406 - . . scaffold1402 WUBlastX LINE_RTE-BovB 165105 165161 21 - . . scaffold1402 TRF Tandem_Repeat 166415 166442 56 + . . scaffold1402 GLEAN mRNA 166588 178600 0.999994 - . ID=CGI_10017581; scaffold1402 TRF Tandem_Repeat 168423 168470 96 + . . scaffold1402 TRF Tandem_Repeat 169468 169536 138 + . . scaffold1402 TRF Tandem_Repeat 173321 175035 2706 + . . scaffold1402 TRF Tandem_Repeat 176439 176505 134 + . . scaffold1402 GLEAN promoter 178601 179600 0.999994 - . ID=CGI_10017581; scaffold1402 TRF Tandem_Repeat 181447 181484 53 + . . scaffold1402 TRF Tandem_Repeat 182374 182432 91 + . . scaffold1402 GLEAN promoter 183651 184650 0.999999 + . ID=CGI_10017582; scaffold1402 TRF Tandem_Repeat 184054 184105 79 + . . scaffold1402 GLEAN mRNA 184651 185376 0.999999 + . ID=CGI_10017582; scaffold1402 TRF Tandem_Repeat 189947 190004 116 + . . scaffold1402 TRF Tandem_Repeat 191472 191509 76 + . . scaffold1402 TRF Tandem_Repeat 212779 212945 100 + . . scaffold1402 GLEAN mRNA 237887 247528 0.999676 - . ID=CGI_10017583; scaffold1402 TRF Tandem_Repeat 241208 241302 181 + . . scaffold1402 TRF Tandem_Repeat 245164 245207 88 + . . scaffold1402 TRF Tandem_Repeat 246435 246478 88 + . . scaffold1402 TRF Tandem_Repeat 246579 246637 52 + . . scaffold1402 GLEAN promoter 247529 248528 0.999676 - . ID=CGI_10017583; scaffold1402 TRF Tandem_Repeat 248364 248495 133 + . . scaffold1402 GLEAN mRNA 251256 258475 0.377274 - . ID=CGI_10017584; scaffold1402 GLEAN promoter 258476 259475 0.377274 - . ID=CGI_10017584; scaffold1402 GLEAN mRNA 258768 274615 0.999925 - . ID=CGI_10017585; scaffold1402 TRF Tandem_Repeat 263523 263589 80 + . . scaffold1402 TRF Tandem_Repeat 264084 264117 68 + . . scaffold1402 TRF Tandem_Repeat 264115 264147 66 + . . scaffold1402 TRF Tandem_Repeat 264335 264385 102 + . . scaffold1402 TRF Tandem_Repeat 266774 266868 118 + . . scaffold1402 GLEAN promoter 274616 275615 0.999925 - . ID=CGI_10017585; scaffold1402 TRF Tandem_Repeat 275991 276396 294 + . . scaffold1402 TRF Tandem_Repeat 277419 277454 54 + . . scaffold1402 TRF Tandem_Repeat 281033 282281 1799 + . . scaffold1402 TRF Tandem_Repeat 283500 283545 57 + . . scaffold1402 TRF Tandem_Repeat 283503 283544 50 + . . scaffold1402 GLEAN mRNA 284677 290501 0.974469 - . ID=CGI_10017586; scaffold1402 TRF Tandem_Repeat 286018 286054 74 + . . scaffold1402 TRF Tandem_Repeat 286162 286196 70 + . . scaffold1402 GLEAN promoter 290502 291501 0.974469 - . ID=CGI_10017586; scaffold1402 GLEAN mRNA 291216 291595 0.889923 - . ID=CGI_10017587; scaffold1402 GLEAN promoter 291596 292595 0.889923 - . ID=CGI_10017587; scaffold1402 TRF Tandem_Repeat 294211 294317 187 + . . scaffold1402 TRF Tandem_Repeat 295291 295347 51 + . . scaffold1402 TRF Tandem_Repeat 295296 295322 54 + . . scaffold1402 TRF Tandem_Repeat 295917 295993 136 + . . scaffold1402 TRF Tandem_Repeat 296303 296360 107 + . . scaffold1402 GLEAN mRNA 298647 305346 0.806242 - . ID=CGI_10017588; scaffold1402 TRF Tandem_Repeat 303557 303671 221 + . . scaffold1402 GLEAN promoter 305347 306346 0.806242 - . ID=CGI_10017588; scaffold1402 WUBlastX LINE_CR1 321772 321957 62 + . . scaffold1402 WUBlastX LINE_CR1 321811 321972 67 + . . scaffold1402 WUBlastX LINE_CR1 321823 322062 67 + . . scaffold1402 WUBlastX LINE_CR1 321823 321957 85 + . . scaffold1402 WUBlastX LINE_L2 322103 322171 23 + . . scaffold1402 WUBlastX LINE_CR1 322121 322480 282 + . . scaffold1402 WUBlastX LINE_CR1-L2 322480 323793 217 + . . scaffold1402 WUBlastX LINE_CR1 322483 323589 562 + . . scaffold1402 GLEAN mRNA 333924 347546 0.999947 - . ID=CGI_10017589; scaffold1402 WUBlastX LINE_CR1 341752 341949 50 + . . scaffold1402 WUBlastX LINE_CR1 341815 341949 66 + . . scaffold1402 WUBlastX LINE_CR1 341836 342000 51 + . . scaffold1402 WUBlastX LINE_CR1 342024 342188 74 + . . scaffold1402 WUBlastX LINE_CR1 342104 342475 245 + . . scaffold1402 WUBlastX LINE_CR1 342167 343591 455 + . . scaffold1402 WUBlastX LINE_CR1 342478 343029 458 + . . scaffold1402 WUBlastX LINE_CR1-L2 343055 343711 43 + . . scaffold1402 GLEAN mRNA 347546 347698 1 - . ID=CGI_10017590; scaffold1402 GLEAN promoter 347547 348546 0.999947 - . ID=CGI_10017589; scaffold1402 GLEAN promoter 347699 348698 1 - . ID=CGI_10017590; scaffold1402 TRF Tandem_Repeat 352588 352905 449 + . . scaffold1402 TRF Tandem_Repeat 356964 357065 54 + . . scaffold1402 WUBlastX LINE_Penelope 368037 368180 53 + . . scaffold1402 GLEAN mRNA 371929 376765 0.67887 - . ID=CGI_10017591; scaffold1402 GLEAN promoter 376766 377765 0.67887 - . ID=CGI_10017591; scaffold1402 TRF Tandem_Repeat 377910 381851 4663 + . . scaffold1402 TRF Tandem_Repeat 377910 381851 4642 + . . scaffold1402 TRF Tandem_Repeat 383551 383614 101 + . . scaffold1402 GLEAN promoter 386395 387394 0.999567 + . ID=CGI_10017592; scaffold1402 GLEAN mRNA 387395 392575 0.999567 + . ID=CGI_10017592; scaffold1402 TRF Tandem_Repeat 391324 391383 66 + . . scaffold1402 WUBlastX LINE_Jockey 397037 397423 22 - . . scaffold1402 WUBlastX LINE_RTE-X 397082 397408 72 - . . scaffold1402 WUBlastX LINE_RTE-X 397091 397336 77 - . . scaffold1402 GLEAN promoter 401740 402739 0.863535 + . ID=CGI_10017593; scaffold1402 GLEAN mRNA 402740 419521 0.863535 + . ID=CGI_10017593; scaffold1402 WUBlastX DNA_TcMar-Tc1 403981 404553 22 + . . scaffold1402 WUBlastX DNA_TcMar-Tc1 404127 404864 94 + . . scaffold1402 WUBlastX DNA_TcMar-Tc1 404565 404864 155 + . . scaffold1402 TRF Tandem_Repeat 420782 420813 64 + . . scaffold1402 TRF Tandem_Repeat 420812 420861 91 + . . scaffold1402 TRF Tandem_Repeat 421522 421587 89 + . . scaffold1402 TRF Tandem_Repeat 421522 421587 98 + . . scaffold1402 TRF Tandem_Repeat 421523 421584 63 + . . scaffold1402 TRF Tandem_Repeat 422521 422596 116 + . . scaffold1402 TRF Tandem_Repeat 427024 427112 137 + . . scaffold1402 WUBlastX LTR_Gypsy-Cigr 428208 428792 104 - . . scaffold1402 WUBlastX LTR_Gypsy-Cigr 428304 428882 171 - . . scaffold1402 WUBlastX LTR_Gypsy 428801 428947 74 - . . scaffold1402 WUBlastX LTR_Gypsy 428801 428920 90 - . . scaffold1402 WUBlastX LTR_Gypsy 428801 428980 55 - . . scaffold1402 TRF Tandem_Repeat 432694 432726 66 + . . scaffold1402 WUBlastX LTR_Ngaro 437285 437485 149 + . . scaffold1402 WUBlastX LTR_Ngaro 437446 437925 265 + . . scaffold1402 WUBlastX LTR_Ngaro 437925 438860 242 + . . scaffold1402 TRF Tandem_Repeat 441528 441604 83 + . . scaffold1402 TRF Tandem_Repeat 441528 441583 51 + . . scaffold1402 TRF Tandem_Repeat 441532 441592 51 + . . scaffold1402 WUBlastX LTR_Ngaro 457585 458478 106 + . . scaffold1402 WUBlastX LTR_Ngaro 457846 458469 155 + . . scaffold1402 WUBlastX LTR_Ngaro 458273 459670 590 + . . scaffold1402 WUBlastX LTR_Ngaro 458501 459670 679 + . . scaffold1402 WUBlastX LTR_Ngaro 459613 460026 37 + . . scaffold1402 WUBlastX LTR_Ngaro 459670 459954 135 + . . scaffold1402 TRF Tandem_Repeat 474297 474353 98 + . . scaffold1402 TRF Tandem_Repeat 474751 474813 117 + . . scaffold1402 TRF Tandem_Repeat 475824 475856 57 + . . scaffold1402 TRF Tandem_Repeat 476383 476471 81 + . . scaffold1402 TRF Tandem_Repeat 476408 476471 58 + . . scaffold1402 TRF Tandem_Repeat 478903 478936 59 + . . scaffold1402 WUBlastX RC_Helitron 478940 479359 139 + . . scaffold1402 WUBlastX LINE_L2 478982 479485 50 + . . scaffold1402 WUBlastX LINE_L2 479078 479575 26 + . . scaffold1402 WUBlastX RC_Helitron 479816 480103 107 + . . scaffold1402 WUBlastX DNA_Harbinger 482503 482679 87 - . . scaffold1402 WUBlastX DNA_Harbinger 482622 482912 20 - . . scaffold1402 WUBlastX DNA_Harbinger 482625 482813 91 - . . scaffold1402 WUBlastX DNA_TcMar-Fot1 485163 485354 83 + . . scaffold1402 TRF Tandem_Repeat 485416 486388 1480 + . . scaffold1402 WUBlastX DNA_TcMar-Fot1 486499 486543 30 + . . scaffold1402 WUBlastX DNA_TcMar-Fot1 486546 487145 448 + . . scaffold1402 WUBlastX DNA_TcMar-Fot1 487066 487521 167 + . . scaffold1402 WUBlastX DNA_PiggyBac 491897 492511 151 + . . scaffold1402 WUBlastX DNA_PiggyBac 491936 492430 156 + . . scaffold1402 WUBlastX DNA_PiggyBac 492044 492451 173 + . . scaffold1402 TRF Tandem_Repeat 496132 496166 54 + . . scaffold1403 GLEAN mRNA 31 3241 0.937766 - . ID=CGI_10020153; scaffold1403 GLEAN promoter 3242 4241 0.937766 - . ID=CGI_10020153; scaffold1403 GLEAN promoter 5181 6180 1 + . ID=CGI_10020154; scaffold1403 GLEAN mRNA 6181 7640 1 + . ID=CGI_10020154; scaffold1403 GLEAN mRNA 7932 14512 0.459466 - . ID=CGI_10020155; scaffold1403 TRF Tandem_Repeat 9174 9205 55 + . . scaffold1403 TRF Tandem_Repeat 9254 10001 1007 + . . scaffold1403 TRF Tandem_Repeat 11103 11461 421 + . . scaffold1403 WUBlastX LTR_Pao 13766 14176 76 - . . scaffold1403 WUBlastX LTR_Pao 13838 14635 48 - . . scaffold1403 GLEAN promoter 14513 15512 0.459466 - . ID=CGI_10020155; scaffold1403 GLEAN mRNA 14529 16909 0.998919 - . ID=CGI_10020156; scaffold1403 GLEAN promoter 16910 17909 0.998919 - . ID=CGI_10020156; scaffold1403 TRF Tandem_Repeat 20381 20424 88 + . . scaffold1403 WUBlastX LTR_DIRS 29119 29502 41 + . . scaffold1403 TRF Tandem_Repeat 29570 29870 279 + . . scaffold1403 WUBlastX LTR_DIRS 30147 30602 145 + . . scaffold1403 WUBlastX LTR_DIRS 30574 30828 160 + . . scaffold1403 WUBlastX LTR_Copia 31875 32156 22 - . . scaffold1403 WUBlastX LTR_Copia 32013 32213 34 - . . scaffold1403 TRF Tandem_Repeat 32227 32326 121 + . . scaffold1403 WUBlastX LTR_Gypsy 32343 32912 220 - . . scaffold1403 WUBlastX LTR_Gypsy 32499 32912 233 - . . scaffold1403 WUBlastX LTR_Gypsy-Cigr 32945 36253 1631 - . . scaffold1403 WUBlastX LTR_Gypsy 36241 37176 239 - . . scaffold1403 WUBlastX LTR_Gypsy 36310 37356 109 - . . scaffold1403 WUBlastX LINE_Penelope 40955 42214 390 - . . scaffold1403 WUBlastX LINE_Penelope 41765 42295 20 - . . scaffold1403 WUBlastX LINE_Penelope 42309 42695 217 + . . scaffold1403 WUBlastX LINE_Penelope 42703 43137 135 + . . scaffold1403 GLEAN promoter 70929 71928 0.949651 + . ID=CGI_10020157; scaffold1403 GLEAN mRNA 71929 81170 0.949651 + . ID=CGI_10020157; scaffold1403 TRF Tandem_Repeat 72224 72275 104 + . . scaffold1403 GLEAN mRNA 83862 89809 1 - . ID=CGI_10020158; scaffold1403 GLEAN promoter 89716 90715 0.310867 + . ID=CGI_10020159; scaffold1403 GLEAN promoter 89810 90809 1 - . ID=CGI_10020158; scaffold1403 GLEAN mRNA 90716 99239 0.310867 + . ID=CGI_10020159; scaffold1403 TRF Tandem_Repeat 96795 96842 96 + . . scaffold1403 TRF Tandem_Repeat 97367 97426 57 + . . scaffold1403 TRF Tandem_Repeat 102553 102587 70 + . . scaffold1403 GLEAN mRNA 102689 111282 0.541584 - . ID=CGI_10020160; scaffold1403 GLEAN promoter 111283 112282 0.541584 - . ID=CGI_10020160; scaffold1403 TRF Tandem_Repeat 112945 112975 53 + . . scaffold1403 TRF Tandem_Repeat 116454 116502 98 + . . scaffold1403 GLEAN mRNA 117374 128622 0.99383 - . ID=CGI_10020161; scaffold1403 TRF Tandem_Repeat 127167 127196 51 + . . scaffold1403 GLEAN promoter 127980 128979 0.332039 + . ID=CGI_10020162; scaffold1403 GLEAN promoter 128623 129622 0.99383 - . ID=CGI_10020161; scaffold1403 GLEAN mRNA 128980 147103 0.332039 + . ID=CGI_10020162; scaffold1403 TRF Tandem_Repeat 133951 133988 76 + . . scaffold1403 TRF Tandem_Repeat 143743 145046 2135 + . . scaffold1403 TRF Tandem_Repeat 145547 145807 369 + . . scaffold1403 GLEAN promoter 149469 150468 0.999879 + . ID=CGI_10020163; scaffold1403 GLEAN mRNA 150469 154318 0.999879 + . ID=CGI_10020163; scaffold1403 WUBlastX DNA_Sola 151964 153823 135 + . . scaffold1403 WUBlastX DNA_Sola 152807 153829 168 + . . scaffold1403 GLEAN promoter 153619 154618 0.999372 + . ID=CGI_10020164; scaffold1403 GLEAN mRNA 154619 154912 0.999372 + . ID=CGI_10020164; scaffold1403 WUBlastX LINE_L1-Tx1 156667 157122 98 + . . scaffold1403 TRF Tandem_Repeat 163763 163880 137 + . . scaffold1403 TRF Tandem_Repeat 164257 164296 80 + . . scaffold1403 WUBlastX LINE_RTE-BovB 168376 168732 57 + . . scaffold1403 WUBlastX LINE_RTE-BovB 168496 168732 58 + . . scaffold1403 WUBlastX LINE_RTE-BovB 168732 169097 171 + . . scaffold1403 WUBlastX LINE_Penelope 169695 170294 40 - . . scaffold1403 WUBlastX LINE_RTE-BovB 171378 171509 78 + . . scaffold1403 WUBlastX LINE_RTE-BovB 171396 171530 54 + . . scaffold1403 WUBlastX LINE_RTE-BovB 171514 171576 29 + . . scaffold1403 TRF Tandem_Repeat 174950 174978 58 + . . scaffold1403 GLEAN promoter 175454 176453 0.651047 + . ID=CGI_10020165; scaffold1403 GLEAN mRNA 176454 189666 0.651047 + . ID=CGI_10020165; scaffold1403 TRF Tandem_Repeat 176617 176642 52 + . . scaffold1403 TRF Tandem_Repeat 182558 182587 51 + . . scaffold1403 TRF Tandem_Repeat 183897 183935 69 + . . scaffold1403 TRF Tandem_Repeat 184527 184588 79 + . . scaffold1403 TRF Tandem_Repeat 190507 190565 109 + . . scaffold1403 WUBlastX LTR_Gypsy 194324 194416 24 + . . scaffold1403 WUBlastX LTR_Gypsy 194699 195301 117 + . . scaffold1403 WUBlastX LTR_Gypsy 195161 195373 31 + . . scaffold1403 WUBlastX LTR_Gypsy 195164 195334 38 + . . scaffold1403 WUBlastX LTR_Gypsy 195424 195687 30 + . . scaffold1403 WUBlastX LTR_Gypsy-Cigr 195708 196076 244 + . . scaffold1403 WUBlastX LTR_Gypsy 196081 196653 235 + . . scaffold1403 WUBlastX LTR_Gypsy 196159 196809 47 + . . scaffold1403 TRF Tandem_Repeat 202940 202995 112 + . . scaffold1403 TRF Tandem_Repeat 217372 217429 98 + . . scaffold1403 TRF Tandem_Repeat 223059 223107 89 + . . scaffold1403 TRF Tandem_Repeat 223249 223309 122 + . . scaffold1403 WUBlastX DNA_TcMar-Marin 229495 230124 159 + . . scaffold1403 WUBlastX DNA_TcMar-Marin 230336 230734 212 + . . scaffold1403 TRF Tandem_Repeat 234474 234531 80 + . . scaffold1403 TRF Tandem_Repeat 235719 235783 94 + . . scaffold1403 TRF Tandem_Repeat 243994 244857 1008 + . . scaffold1403 WUBlastX LTR_Gypsy 249637 250221 55 + . . scaffold1403 TRF Tandem_Repeat 250776 250849 114 + . . scaffold1403 TRF Tandem_Repeat 250777 250846 61 + . . scaffold1403 TRF Tandem_Repeat 294795 296656 2467 + . . scaffold1403 GLEAN promoter 300039 301038 0.999994 + . ID=CGI_10020166; scaffold1403 GLEAN mRNA 301039 311460 0.999994 + . ID=CGI_10020166; scaffold1403 WUBlastX LTR_DIRS 303166 303441 124 + . . scaffold1403 WUBlastX LTR_DIRS 303446 305377 912 + . . scaffold1403 TRF Tandem_Repeat 309579 310749 1469 + . . scaffold1403 TRF Tandem_Repeat 318063 318100 51 + . . scaffold1403 WUBlastX LINE_Penelope 320156 320560 73 + . . scaffold1403 WUBlastX LINE_Penelope 320222 320542 73 + . . scaffold1403 WUBlastX LINE_Penelope 320285 320560 89 + . . scaffold1403 WUBlastX LINE_Penelope 320291 320638 82 + . . scaffold1403 TRF Tandem_Repeat 320893 320944 95 + . . scaffold1403 WUBlastX DNA_IS4EU 329777 330070 61 - . . scaffold1403 TRF Tandem_Repeat 330196 330227 64 + . . scaffold1403 TRF Tandem_Repeat 330371 330421 102 + . . scaffold1403 WUBlastX RC_Helitron 330831 331013 113 + . . scaffold1403 WUBlastX RC_Helitron 330991 331068 45 + . . scaffold1403 WUBlastX RC_Helitron 331067 332389 573 + . . scaffold1403 WUBlastX LINE_L2 331745 332539 38 + . . scaffold1403 WUBlastX LINE_CR1-L2 332653 332694 20 + . . scaffold1403 GLEAN promoter 333452 334451 0.999184 + . ID=CGI_10020167; scaffold1403 GLEAN mRNA 334452 342219 0.999184 + . ID=CGI_10020167; scaffold1403 TRF Tandem_Repeat 335913 335994 51 + . . scaffold1403 TRF Tandem_Repeat 345816 345869 90 + . . scaffold1403 GLEAN mRNA 347184 356858 0.966311 - . ID=CGI_10020168; scaffold1403 TRF Tandem_Repeat 348224 348311 176 + . . scaffold1403 GLEAN promoter 356859 357858 0.966311 - . ID=CGI_10020168; scaffold1403 GLEAN promoter 364456 365455 0.996644 + . ID=CGI_10020169; scaffold1403 GLEAN mRNA 365456 365911 0.996644 + . ID=CGI_10020169; scaffold1403 GLEAN promoter 366362 367361 0.993906 + . ID=CGI_10020170; scaffold1403 GLEAN mRNA 367362 369009 0.993906 + . ID=CGI_10020170; scaffold1403 TRF Tandem_Repeat 371009 371082 148 + . . scaffold1403 WUBlastX LINE_L2 374089 374373 58 + . . scaffold1403 WUBlastX LINE_RTE-BovB 374434 374556 70 + . . scaffold1403 TRF Tandem_Repeat 374610 374635 52 + . . scaffold1403 GLEAN promoter 376107 377106 0.767026 + . ID=CGI_10020171; scaffold1403 GLEAN mRNA 377107 378747 0.767026 + . ID=CGI_10020171; scaffold1403 GLEAN promoter 386771 387770 0.662471 + . ID=CGI_10020172; scaffold1403 GLEAN mRNA 387771 394517 0.662471 + . ID=CGI_10020172; scaffold1403 WUBlastX LINE_CR1 393159 394067 22 + . . scaffold1403 GLEAN promoter 400699 401698 0.998504 + . ID=CGI_10020173; scaffold1403 GLEAN mRNA 401699 402965 0.998504 + . ID=CGI_10020173; scaffold1403 GLEAN mRNA 404886 422361 0.999675 - . ID=CGI_10020174; scaffold1403 TRF Tandem_Repeat 407642 407688 87 + . . scaffold1403 GLEAN promoter 422362 423361 0.999675 - . ID=CGI_10020174; scaffold1403 GLEAN mRNA 425093 425596 0.411252 - . ID=CGI_10020175; scaffold1403 GLEAN promoter 425597 426596 0.411252 - . ID=CGI_10020175; scaffold1403 GLEAN mRNA 432630 445366 0.997486 - . ID=CGI_10020176; scaffold1403 TRF Tandem_Repeat 434825 435621 1337 + . . scaffold1403 TRF Tandem_Repeat 435630 435722 96 + . . scaffold1403 TRF Tandem_Repeat 435635 435722 113 + . . scaffold1403 TRF Tandem_Repeat 436613 436637 50 + . . scaffold1403 GLEAN promoter 445367 446366 0.997486 - . ID=CGI_10020176; scaffold1403 TRF Tandem_Repeat 447400 447447 96 + . . scaffold1403 TRF Tandem_Repeat 452695 452747 106 + . . scaffold1403 GLEAN mRNA 454280 455203 0.593391 - . ID=CGI_10020177; scaffold1403 GLEAN promoter 455204 456203 0.593391 - . ID=CGI_10020177; scaffold1403 TRF Tandem_Repeat 455753 455785 50 + . . scaffold1403 GLEAN promoter 455844 456843 0.980388 + . ID=CGI_10020178; scaffold1403 GLEAN mRNA 456844 473500 0.980388 + . ID=CGI_10020178; scaffold1403 TRF Tandem_Repeat 458899 459164 370 + . . scaffold1403 TRF Tandem_Repeat 460602 460650 52 + . . scaffold1403 TRF Tandem_Repeat 463702 463738 74 + . . scaffold1403 TRF Tandem_Repeat 480507 480564 116 + . . scaffold1403 TRF Tandem_Repeat 492174 492227 108 + . . scaffold1403 TRF Tandem_Repeat 494952 494993 84 + . . scaffold1403 GLEAN promoter 496828 497827 0.999973 + . ID=CGI_10020179; scaffold1403 GLEAN mRNA 497828 498937 0.999973 + . ID=CGI_10020179; scaffold1403 TRF Tandem_Repeat 499607 499679 146 + . . scaffold1403 TRF Tandem_Repeat 501565 501609 90 + . . scaffold1403 TRF Tandem_Repeat 502750 502782 66 + . . scaffold1403 GLEAN mRNA 502999 503280 0.999372 - . ID=CGI_10020180; scaffold1403 GLEAN promoter 503281 504280 0.999372 - . ID=CGI_10020180; scaffold1403 TRF Tandem_Repeat 503341 503407 134 + . . scaffold1403 TRF Tandem_Repeat 506990 507033 88 + . . scaffold1403 TRF Tandem_Repeat 509869 509946 80 + . . scaffold1403 TRF Tandem_Repeat 512296 512336 82 + . . scaffold1403 TRF Tandem_Repeat 514945 514992 89 + . . scaffold1403 GLEAN promoter 520405 521404 0.999956 + . ID=CGI_10020181; scaffold1403 GLEAN mRNA 521405 530953 0.999956 + . ID=CGI_10020181; scaffold1403 TRF Tandem_Repeat 533450 533492 86 + . . scaffold1403 GLEAN mRNA 533958 540908 0.999269 - . ID=CGI_10020182; scaffold1403 GLEAN promoter 540909 541908 0.999269 - . ID=CGI_10020182; scaffold1403 GLEAN promoter 544447 545446 1 + . ID=CGI_10020183; scaffold1403 GLEAN mRNA 545447 545920 1 + . ID=CGI_10020183; scaffold1403 WUBlastX DNA_Maverick 558256 559248 447 + . . scaffold1403 WUBlastX DNA_Maverick 560639 561718 546 + . . scaffold1403 WUBlastX DNA_Maverick 561733 562068 127 + . . scaffold1403 WUBlastX DNA_Maverick 561733 562014 134 + . . scaffold1403 WUBlastX DNA_Maverick 562336 562965 368 + . . scaffold1403 WUBlastX DNA_Maverick 563300 563731 63 + . . scaffold1403 WUBlastX DNA_Maverick 563468 563749 88 + . . scaffold1403 WUBlastX DNA_Maverick 563486 563806 69 + . . scaffold1403 WUBlastX LTR_Gypsy 567949 568053 26 - . . scaffold1403 WUBlastX DNA_IS4EU 568393 568659 127 - . . scaffold1403 WUBlastX DNA_IS4EU 568661 568723 35 - . . scaffold1403 WUBlastX LTR_Gypsy-Cigr 568699 568848 82 - . . scaffold1403 WUBlastX LTR_Gypsy-Cigr 568729 568848 85 - . . scaffold1403 WUBlastX LTR_Gypsy 568842 569234 196 - . . scaffold1403 WUBlastX LTR_Gypsy 568905 569423 164 - . . scaffold1403 WUBlastX LTR_Gypsy 568905 569339 234 - . . scaffold1403 WUBlastX LTR_Gypsy 568905 569216 248 - . . scaffold1403 WUBlastX DNA_IS4EU 569432 569608 75 - . . scaffold1403 WUBlastX LTR_Gypsy 569563 569646 33 - . . scaffold1403 WUBlastX LTR_Gypsy 569779 569832 23 - . . scaffold1403 GLEAN mRNA 570715 576701 0.734339 - . ID=CGI_10020184; scaffold1403 WUBlastX LTR_Pao 571614 571871 29 - . . scaffold1403 TRF Tandem_Repeat 572961 573266 375 + . . scaffold1403 TRF Tandem_Repeat 576409 576496 81 + . . scaffold1403 GLEAN promoter 576702 577701 0.734339 - . ID=CGI_10020184; scaffold1403 GLEAN mRNA 583312 583605 0.999955 - . ID=CGI_10020185; scaffold1403 GLEAN promoter 583606 584605 0.999955 - . ID=CGI_10020185; scaffold1403 WUBlastX DNA_Merlin 586842 587243 126 + . . scaffold1403 TRF Tandem_Repeat 587327 588106 1136 + . . scaffold1403 TRF Tandem_Repeat 588137 588184 60 + . . scaffold1403 WUBlastX DNA_PiggyBac 589688 590125 116 - . . scaffold1403 WUBlastX DNA_PiggyBac 589712 590059 185 - . . scaffold1403 WUBlastX DNA_PiggyBac 590083 590187 24 - . . scaffold1403 WUBlastX DNA_PiggyBac 590083 590286 22 - . . scaffold1403 GLEAN promoter 590552 591551 0.603218 + . ID=CGI_10020186; scaffold1403 GLEAN mRNA 591552 592767 0.603218 + . ID=CGI_10020186; scaffold1403 GLEAN promoter 591768 592767 0.99967 + . ID=CGI_10020187; scaffold1403 GLEAN mRNA 592768 593919 0.99967 + . ID=CGI_10020187; scaffold1403 WUBlastX LTR_Gypsy 597048 597485 37 + . . scaffold1403 TRF Tandem_Repeat 597114 597155 68 + . . scaffold1403 TRF Tandem_Repeat 597117 597154 51 + . . scaffold1403 WUBlastX LTR_Gypsy 597159 597476 92 + . . scaffold1403 WUBlastX LTR_Gypsy 597207 597473 172 + . . scaffold1403 WUBlastX LTR_Gypsy 597457 597885 324 + . . scaffold1403 WUBlastX LTR_Gypsy 597475 598011 261 + . . scaffold1403 WUBlastX LTR_Gypsy 597858 598277 40 + . . scaffold1403 WUBlastX LTR_Gypsy 597885 598208 98 + . . scaffold1403 WUBlastX LTR_Gypsy 597891 598076 171 + . . scaffold1403 WUBlastX LTR_Gypsy 597894 598121 124 + . . scaffold1403 WUBlastX LTR_Gypsy 598412 598840 231 + . . scaffold1403 WUBlastX LTR_Gypsy 598523 599806 417 + . . scaffold1403 WUBlastX LTR_Gypsy 599375 599971 247 + . . scaffold1403 WUBlastX LTR_Gypsy 599393 600091 57 + . . scaffold1403 TRF Tandem_Repeat 603728 603766 78 + . . scaffold1403 TRF Tandem_Repeat 605928 606822 909 + . . scaffold1403 WUBlastX LTR_Pao 609927 610235 202 - . . scaffold1403 GLEAN mRNA 612208 612819 0.999999 - . ID=CGI_10020188; scaffold1403 WUBlastX LTR_DIRS 612223 613479 233 - . . scaffold1403 WUBlastX LTR_DIRS 612331 614001 184 - . . scaffold1403 GLEAN promoter 612820 613819 0.999999 - . ID=CGI_10020188; scaffold1403 WUBlastX LTR_DIRS 613513 614202 45 - . . scaffold1403 WUBlastX LTR_Gypsy 613633 614091 47 - . . scaffold1403 GLEAN mRNA 614580 614945 0.618241 - . ID=CGI_10020189; scaffold1403 GLEAN promoter 614946 615945 0.618241 - . ID=CGI_10020189; scaffold1403 GLEAN mRNA 615329 620752 0.997653 - . ID=CGI_10020190; scaffold1403 WUBlastX LTR_Pao 616950 617033 36 + . . scaffold1403 WUBlastX LTR_Pao 617036 617089 27 + . . scaffold1403 GLEAN promoter 620753 621752 0.997653 - . ID=CGI_10020190; scaffold1403 TRF Tandem_Repeat 624686 624734 98 + . . scaffold1403 GLEAN promoter 628972 629971 0.999852 + . ID=CGI_10020191; scaffold1403 GLEAN mRNA 629972 631839 0.999852 + . ID=CGI_10020191; scaffold1403 TRF Tandem_Repeat 635048 635517 627 + . . scaffold1404 GLEAN mRNA 13965 14609 0.618186 - . ID=CGI_10008822; scaffold1404 GLEAN promoter 14610 15609 0.618186 - . ID=CGI_10008822; scaffold1404 TRF Tandem_Repeat 14973 15023 66 + . . scaffold1404 TRF Tandem_Repeat 14973 15022 91 + . . scaffold1404 GLEAN promoter 17159 18158 0.480962 + . ID=CGI_10008823; scaffold1404 TRF Tandem_Repeat 17225 17255 62 + . . scaffold1404 GLEAN mRNA 18159 18698 0.480962 + . ID=CGI_10008823; scaffold1404 TRF Tandem_Repeat 27680 27738 118 + . . scaffold1404 TRF Tandem_Repeat 31015 31119 113 + . . scaffold1404 TRF Tandem_Repeat 31015 31119 113 + . . scaffold1404 TRF Tandem_Repeat 31018 31132 96 + . . scaffold1404 GLEAN promoter 37283 38282 0.999676 + . ID=CGI_10008824; scaffold1404 GLEAN mRNA 38283 51126 0.999676 + . ID=CGI_10008824; scaffold1404 TRF Tandem_Repeat 44906 45026 77 + . . scaffold1404 TRF Tandem_Repeat 47204 47239 72 + . . scaffold1404 GLEAN mRNA 52291 68988 0.999949 - . ID=CGI_10008825; scaffold1404 TRF Tandem_Repeat 60399 60449 102 + . . scaffold1404 TRF Tandem_Repeat 63688 63736 98 + . . scaffold1404 GLEAN promoter 68989 69988 0.999949 - . ID=CGI_10008825; scaffold1404 WUBlastX LINE_RTE-BovB 76890 76988 51 + . . scaffold1404 WUBlastX LINE_RTE-BovB 77084 77203 32 + . . scaffold1404 GLEAN promoter 80566 81565 0.999999 + . ID=CGI_10008827; scaffold1404 GLEAN mRNA 81506 81700 0.776794 - . ID=CGI_10008826; scaffold1404 GLEAN mRNA 81566 88959 0.999999 + . ID=CGI_10008827; scaffold1404 GLEAN promoter 81701 82700 0.776794 - . ID=CGI_10008826; scaffold1404 GLEAN mRNA 90990 97777 0.999981 - . ID=CGI_10008828; scaffold1404 GLEAN promoter 97778 98777 0.999981 - . ID=CGI_10008828; scaffold1404 GLEAN promoter 98875 99874 1 + . ID=CGI_10008829; scaffold1404 GLEAN mRNA 99875 105523 1 + . ID=CGI_10008829; scaffold1404 GLEAN mRNA 111746 123746 0.517387 - . ID=CGI_10008830; scaffold1404 GLEAN promoter 123747 124746 0.517387 - . ID=CGI_10008830; scaffold1404 TRF Tandem_Repeat 139914 139943 60 + . . scaffold1404 GLEAN promoter 140540 141539 1 + . ID=CGI_10008831; scaffold1404 GLEAN mRNA 141540 147626 1 + . ID=CGI_10008831; scaffold1404 TRF Tandem_Repeat 142207 142268 124 + . . scaffold1404 WUBlastX LTR_Ngaro 153842 153946 33 + . . scaffold1404 WUBlastX LTR_Ngaro 154396 154479 49 - . . scaffold1404 WUBlastX LTR_Ngaro 154451 154789 63 + . . scaffold1404 WUBlastX LTR_Ngaro 154511 154789 102 + . . scaffold1404 TRF Tandem_Repeat 170173 170209 74 + . . scaffold1404 TRF Tandem_Repeat 174039 174095 105 + . . scaffold1404 GLEAN promoter 174787 175786 0.544647 + . ID=CGI_10008832; scaffold1404 GLEAN mRNA 175787 202626 0.544647 + . ID=CGI_10008832; scaffold1404 TRF Tandem_Repeat 177335 177361 54 + . . scaffold1404 TRF Tandem_Repeat 186009 186041 66 + . . scaffold1404 TRF Tandem_Repeat 195669 199615 4582 + . . scaffold1404 TRF Tandem_Repeat 195669 199615 4582 + . . scaffold1404 TRF Tandem_Repeat 195669 199615 4118 + . . scaffold1404 WUBlastX LINE_RTE-X 206067 206531 60 + . . scaffold1404 WUBlastX LINE_RTE-X 206082 206462 118 + . . scaffold1404 TRF Tandem_Repeat 209072 209768 546 + . . scaffold1404 TRF Tandem_Repeat 217661 217698 76 + . . scaffold1405 TRF Tandem_Repeat 10881 12463 2390 + . . scaffold1405 TRF Tandem_Repeat 14860 15996 1542 + . . scaffold1405 WUBlastX LINE_L1-Tx1 26767 26934 38 - . . scaffold1405 WUBlastX LINE_L1-Tx1 26794 26955 69 - . . scaffold1405 WUBlastX LINE_L1-Tx1 26964 27155 36 - . . scaffold1405 TRF Tandem_Repeat 51677 52425 1034 + . . scaffold1405 TRF Tandem_Repeat 56118 56204 174 + . . scaffold1405 TRF Tandem_Repeat 59043 59228 313 + . . scaffold1405 TRF Tandem_Repeat 59737 60474 931 + . . scaffold1405 TRF Tandem_Repeat 59737 60474 1018 + . . scaffold1405 TRF Tandem_Repeat 63199 63311 113 + . . scaffold1406 GLEAN promoter 1 239 0.995628 + . ID=CGI_10000528; scaffold1406 GLEAN mRNA 240 578 0.995628 + . ID=CGI_10000528; scaffold1406 GLEAN mRNA 706 903 0.999372 - . ID=CGI_10000529; scaffold1406 GLEAN promoter 904 1903 0.999372 - . ID=CGI_10000529; scaffold1406 GLEAN promoter 2782 3781 0.999984 + . ID=CGI_10000532; scaffold1406 GLEAN mRNA 3782 5710 0.999984 + . ID=CGI_10000532; scaffold1408 GLEAN promoter 75 1074 0.650712 + . ID=CGI_10000933; scaffold1408 GLEAN mRNA 1075 10794 0.650712 + . ID=CGI_10000933; scaffold1408 WUBlastX LINE_RTE-X 3606 4085 22 - . . scaffold1409 GLEAN mRNA 610 2726 0.999998 - . ID=CGI_10013776; scaffold1409 GLEAN promoter 2727 3726 0.999998 - . ID=CGI_10013776; scaffold1409 TRF Tandem_Repeat 2802 2842 82 + . . scaffold1409 GLEAN mRNA 3661 5704 0.888596 - . ID=CGI_10013777; scaffold1409 GLEAN promoter 5705 6704 0.888596 - . ID=CGI_10013777; scaffold1409 GLEAN mRNA 7320 12143 0.695423 - . ID=CGI_10013778; scaffold1409 GLEAN promoter 12144 13143 0.695423 - . ID=CGI_10013778; scaffold1409 GLEAN promoter 13212 14211 1 + . ID=CGI_10013779; scaffold1409 GLEAN mRNA 14212 18932 1 + . ID=CGI_10013779; scaffold1409 GLEAN mRNA 20809 37285 1 - . ID=CGI_10013780; scaffold1409 TRF Tandem_Repeat 22600 22634 70 + . . scaffold1409 GLEAN promoter 37286 38285 1 - . ID=CGI_10013780; scaffold1409 TRF Tandem_Repeat 40945 40987 52 + . . scaffold1409 GLEAN promoter 52059 53058 0.806318 + . ID=CGI_10013781; scaffold1409 TRF Tandem_Repeat 52437 52496 120 + . . scaffold1409 GLEAN mRNA 53059 83540 0.806318 + . ID=CGI_10013781; scaffold1409 TRF Tandem_Repeat 56248 56443 171 + . . scaffold1409 TRF Tandem_Repeat 61169 61217 98 + . . scaffold1409 GLEAN mRNA 72987 87792 0.969783 - . ID=CGI_10013782; scaffold1409 GLEAN promoter 87793 88792 0.969783 - . ID=CGI_10013782; scaffold1409 TRF Tandem_Repeat 87860 87911 104 + . . scaffold1409 TRF Tandem_Repeat 97125 97168 88 + . . scaffold1409 WUBlastX LINE_RTE-BovB 110860 111558 891 - . . scaffold1409 WUBlastX LINE_RTE-BovB 110860 111786 332 - . . scaffold1409 WUBlastX LINE_RTE-BovB 111566 111862 131 - . . scaffold1409 WUBlastX LINE_RTE-BovB 111852 112757 827 + . . scaffold1409 WUBlastX LINE_RTE-BovB 112718 112990 227 + . . scaffold1409 TRF Tandem_Repeat 115437 115467 53 + . . scaffold1409 WUBlastX DNA_Sola 115530 116327 116 - . . scaffold1409 WUBlastX DNA_Sola 115533 116642 114 - . . scaffold1409 WUBlastX DNA_Sola 115536 116141 191 - . . scaffold1409 TRF Tandem_Repeat 116675 117184 255 + . . scaffold1409 TRF Tandem_Repeat 116844 117019 106 + . . scaffold1409 TRF Tandem_Repeat 116890 117184 125 + . . scaffold1409 GLEAN mRNA 123560 153776 0.210676 - . ID=CGI_10013783; scaffold1409 TRF Tandem_Repeat 134042 134097 103 + . . scaffold1409 WUBlastX LINE_RTE-BovB 137952 139016 1288 - . . scaffold1409 WUBlastX LINE_RTE-BovB 139016 140464 1949 - . . scaffold1409 WUBlastX LINE_RTE-BovB 140466 140522 41 - . . scaffold1409 TRF Tandem_Repeat 142445 142490 74 + . . scaffold1409 TRF Tandem_Repeat 146004 146036 66 + . . scaffold1409 GLEAN promoter 153777 154776 0.210676 - . ID=CGI_10013783; scaffold1409 WUBlastX LINE_L1-Tx1 162720 162992 32 + . . scaffold1409 WUBlastX LINE_L1-Tx1 162940 163485 92 + . . scaffold1409 WUBlastX LINE_L1-Tx1 163057 163476 128 + . . scaffold1409 TRF Tandem_Repeat 166752 166785 68 + . . scaffold1409 TRF Tandem_Repeat 171965 172004 80 + . . scaffold1409 TRF Tandem_Repeat 172767 172809 86 + . . scaffold1409 TRF Tandem_Repeat 175261 175298 76 + . . scaffold1409 WUBlastX LTR_Pao 179416 179622 187 - . . scaffold1409 WUBlastX LTR_Pao 179612 180247 175 - . . scaffold1409 WUBlastX LTR_Pao 179621 180142 433 - . . scaffold1409 TRF Tandem_Repeat 191017 191078 124 + . . scaffold1409 WUBlastX LINE_L1-Tx1 209233 209445 146 + . . scaffold1409 WUBlastX LINE_L1 210617 211312 77 + . . scaffold1409 WUBlastX LINE_L1 210764 212110 221 + . . scaffold1409 WUBlastX LINE_L1-Tx1 210767 211351 366 + . . scaffold1409 WUBlastX LINE_L1-Tx1 212122 214077 749 + . . scaffold1409 TRF Tandem_Repeat 218911 218938 56 + . . scaffold1409 WUBlastX LINE_L1-Tx1 220971 221237 64 + . . scaffold1409 GLEAN promoter 221620 222619 0.995549 + . ID=CGI_10013784; scaffold1409 GLEAN mRNA 222620 225458 0.995549 + . ID=CGI_10013784; scaffold1409 GLEAN promoter 224555 225554 0.72858 + . ID=CGI_10013785; scaffold1409 GLEAN mRNA 225555 267916 0.72858 + . ID=CGI_10013785; scaffold1409 TRF Tandem_Repeat 225948 226026 113 + . . scaffold1409 TRF Tandem_Repeat 225948 226026 113 + . . scaffold1409 TRF Tandem_Repeat 226278 226328 102 + . . scaffold1409 TRF Tandem_Repeat 227667 227954 325 + . . scaffold1409 TRF Tandem_Repeat 228790 229254 743 + . . scaffold1409 TRF Tandem_Repeat 230142 230177 72 + . . scaffold1409 TRF Tandem_Repeat 232129 232379 294 + . . scaffold1409 TRF Tandem_Repeat 236400 236450 50 + . . scaffold1409 TRF Tandem_Repeat 240301 240356 66 + . . scaffold1409 TRF Tandem_Repeat 240301 240358 107 + . . scaffold1409 TRF Tandem_Repeat 240304 240352 57 + . . scaffold1409 TRF Tandem_Repeat 247204 247374 333 + . . scaffold1409 TRF Tandem_Repeat 247966 248012 94 + . . scaffold1409 TRF Tandem_Repeat 256044 256964 1119 + . . scaffold1409 TRF Tandem_Repeat 257765 258005 328 + . . scaffold1409 TRF Tandem_Repeat 265186 266344 1188 + . . scaffold1409 GLEAN promoter 267490 268489 0.678941 + . ID=CGI_10013786; scaffold1409 TRF Tandem_Repeat 268191 268488 488 + . . scaffold1409 GLEAN mRNA 268490 282042 0.678941 + . ID=CGI_10013786; scaffold1409 TRF Tandem_Repeat 269811 269926 94 + . . scaffold1409 TRF Tandem_Repeat 272484 272545 115 + . . scaffold1409 TRF Tandem_Repeat 273645 274215 758 + . . scaffold1409 TRF Tandem_Repeat 289476 289570 156 + . . scaffold1409 GLEAN mRNA 290480 292119 1 - . ID=CGI_10013787; scaffold1409 GLEAN promoter 292120 293119 1 - . ID=CGI_10013787; scaffold1409 TRF Tandem_Repeat 292199 292263 121 + . . scaffold1409 TRF Tandem_Repeat 293152 293234 96 + . . scaffold1409 GLEAN promoter 295794 296793 0.996819 + . ID=CGI_10013788; scaffold1409 GLEAN mRNA 296794 300998 0.996819 + . ID=CGI_10013788; scaffold1409 GLEAN promoter 301029 302028 0.997974 + . ID=CGI_10013789; scaffold1409 GLEAN mRNA 302029 307910 0.997974 + . ID=CGI_10013789; scaffold1409 TRF Tandem_Repeat 307498 307539 75 + . . scaffold1409 TRF Tandem_Repeat 307613 307679 127 + . . scaffold1409 TRF Tandem_Repeat 318791 318965 97 + . . scaffold1409 TRF Tandem_Repeat 318791 319017 130 + . . scaffold1409 GLEAN mRNA 320209 321471 0.965866 - . ID=CGI_10013790; scaffold1409 GLEAN promoter 321472 322471 0.965866 - . ID=CGI_10013790; scaffold1409 GLEAN promoter 323559 324558 0.993493 + . ID=CGI_10013792; scaffold1409 GLEAN mRNA 324495 351305 0.918932 - . ID=CGI_10013791; scaffold1409 GLEAN mRNA 324559 327816 0.993493 + . ID=CGI_10013792; scaffold1409 GLEAN promoter 328296 329295 0.994281 + . ID=CGI_10013793; scaffold1409 GLEAN mRNA 329296 337932 0.994281 + . ID=CGI_10013793; scaffold1409 TRF Tandem_Repeat 329798 329865 118 + . . scaffold1409 TRF Tandem_Repeat 329900 331023 1589 + . . scaffold1409 TRF Tandem_Repeat 334440 335580 1620 + . . scaffold1409 WUBlastX LINE_L1-Tx1 336901 337482 29 - . . scaffold1409 WUBlastX LINE_L2 337570 337902 70 - . . scaffold1409 TRF Tandem_Repeat 340029 340418 690 + . . scaffold1409 TRF Tandem_Repeat 350031 350676 349 + . . scaffold1409 GLEAN promoter 351306 352305 0.918932 - . ID=CGI_10013791; scaffold1409 GLEAN mRNA 351791 363597 0.999654 - . ID=CGI_10013794; scaffold1409 TRF Tandem_Repeat 356715 356740 52 + . . scaffold1409 GLEAN promoter 359833 360832 0.990666 + . ID=CGI_10013795; scaffold1409 GLEAN mRNA 360833 368643 0.990666 + . ID=CGI_10013795; scaffold1409 GLEAN promoter 363598 364597 0.999654 - . ID=CGI_10013794; scaffold141 GLEAN promoter 1 114 1 + . ID=CGI_10006576; scaffold141 GLEAN mRNA 115 3748 1 + . ID=CGI_10006576; scaffold141 GLEAN mRNA 12156 26323 0.833265 - . ID=CGI_10006577; scaffold141 GLEAN promoter 13441 14440 0.989677 + . ID=CGI_10006578; scaffold141 GLEAN mRNA 14441 22237 0.989677 + . ID=CGI_10006578; scaffold141 TRF Tandem_Repeat 15284 15318 70 + . . scaffold141 GLEAN promoter 26324 27323 0.833265 - . ID=CGI_10006577; scaffold141 TRF Tandem_Repeat 27706 27746 75 + . . scaffold141 GLEAN mRNA 29903 31147 0.580238 - . ID=CGI_10006579; scaffold141 GLEAN promoter 31148 32147 0.580238 - . ID=CGI_10006579; scaffold141 GLEAN promoter 33895 34894 0.989288 + . ID=CGI_10006580; scaffold141 GLEAN mRNA 34895 61533 0.989288 + . ID=CGI_10006580; scaffold141 TRF Tandem_Repeat 37060 37352 453 + . . scaffold141 WUBlastX LINE_L1 40123 40971 25 - . . scaffold141 WUBlastX LINE_L1 40147 40842 197 - . . scaffold141 TRF Tandem_Repeat 64123 64229 142 + . . scaffold141 TRF Tandem_Repeat 76019 76048 60 + . . scaffold141 TRF Tandem_Repeat 80570 80713 56 + . . scaffold141 WUBlastX LINE_RTE-X 83334 83792 84 - . . scaffold141 WUBlastX LINE_RTE-X 83457 84137 24 - . . scaffold141 WUBlastX LINE_RTE-X 83493 83801 100 - . . scaffold141 TRF Tandem_Repeat 96876 97644 1038 + . . scaffold141 WUBlastX DNA_IS4EU 99987 100238 118 - . . scaffold141 WUBlastX DNA_IS4EU 100259 100468 96 - . . scaffold141 WUBlastX DNA_Kolobok-IS4 100483 100641 38 - . . scaffold141 WUBlastX DNA_IS4EU 100510 100626 49 - . . scaffold141 GLEAN mRNA 101474 113635 0.413094 - . ID=CGI_10006581; scaffold141 GLEAN promoter 113636 114635 0.413094 - . ID=CGI_10006581; scaffold141 WUBlastX DNA_Harbinger 127340 127462 43 - . . scaffold141 WUBlastX DNA_Harbinger 127637 127750 100 - . . scaffold141 WUBlastX DNA_Harbinger 127978 128349 118 - . . scaffold141 TRF Tandem_Repeat 128914 128956 59 + . . scaffold141 WUBlastX LTR_Gypsy 131476 132159 68 - . . scaffold141 WUBlastX LTR_Gypsy-Cigr 131707 132183 113 - . . scaffold141 WUBlastX LTR_Gypsy 131755 132378 82 - . . scaffold141 WUBlastX LTR_Gypsy 131761 132159 203 - . . scaffold141 WUBlastX LTR_Gypsy 132236 132508 25 - . . scaffold141 WUBlastX LTR_Gypsy 132236 132439 28 - . . scaffold141 WUBlastX DNA_TcMar-Tc2 132603 132827 66 - . . scaffold141 WUBlastX LINE_RTE-X 144073 144435 92 + . . scaffold141 WUBlastX LINE_RTE-X 144214 144591 76 + . . scaffold141 WUBlastX LINE_RTE-X 144220 144693 45 + . . scaffold141 WUBlastX LTR_Gypsy 148211 148741 79 + . . scaffold141 WUBlastX LTR_Gypsy 149013 149336 22 + . . scaffold141 WUBlastX LTR_Gypsy 149094 149336 22 + . . scaffold141 WUBlastX LTR_Gypsy 149253 149336 32 + . . scaffold141 WUBlastX LTR_Gypsy 149274 149336 33 + . . scaffold141 WUBlastX LTR_Gypsy 149277 149393 23 + . . scaffold141 WUBlastX LTR_Gypsy 149280 149348 29 + . . scaffold141 WUBlastX LTR_Gypsy 149292 149360 26 + . . scaffold141 WUBlastX LTR_ERV1 149295 149336 38 + . . scaffold141 WUBlastX LTR_Gypsy 149342 149551 20 + . . scaffold141 WUBlastX LTR_Gypsy 149542 149886 50 + . . scaffold141 WUBlastX LTR_Gypsy-Cigr 149865 150764 425 + . . scaffold141 WUBlastX LTR_Gypsy 150015 150764 475 + . . scaffold141 WUBlastX LTR_Gypsy 150721 152541 659 + . . scaffold141 WUBlastX LTR_Gypsy 152526 153125 95 + . . scaffold141 WUBlastX LTR_Gypsy 152547 152966 186 + . . scaffold141 WUBlastX LTR_Gypsy 153077 153229 52 + . . scaffold1410 GLEAN mRNA 1217 4982 1 - . ID=CGI_10001049; scaffold1410 GLEAN promoter 4983 5982 1 - . ID=CGI_10001049; scaffold1410 GLEAN mRNA 5558 11225 1 - . ID=CGI_10001050; scaffold1410 GLEAN promoter 11226 12225 1 - . ID=CGI_10001050; scaffold1411 GLEAN mRNA 228 22448 0.999949 - . ID=CGI_10009183; scaffold1411 TRF Tandem_Repeat 473 1539 1139 + . . scaffold1411 TRF Tandem_Repeat 473 1539 1083 + . . scaffold1411 TRF Tandem_Repeat 476 1539 1091 + . . scaffold1411 TRF Tandem_Repeat 12860 12911 50 + . . scaffold1411 TRF Tandem_Repeat 14898 14922 50 + . . scaffold1411 GLEAN promoter 22449 23448 0.999949 - . ID=CGI_10009183; scaffold1411 GLEAN mRNA 23088 24423 1 - . ID=CGI_10009184; scaffold1411 GLEAN promoter 24424 25423 1 - . ID=CGI_10009184; scaffold1411 GLEAN mRNA 24558 65895 0.728594 - . ID=CGI_10009185; scaffold1411 TRF Tandem_Repeat 36495 36528 61 + . . scaffold1411 GLEAN promoter 65896 66895 0.728594 - . ID=CGI_10009185; scaffold1411 GLEAN mRNA 68337 88337 0.750194 - . ID=CGI_10009186; scaffold1411 TRF Tandem_Repeat 72017 72051 70 + . . scaffold1411 TRF Tandem_Repeat 73148 73173 52 + . . scaffold1411 WUBlastX LINE_RTE-X 79872 80375 38 + . . scaffold1411 WUBlastX LINE_RTE-X 80049 80375 58 + . . scaffold1411 TRF Tandem_Repeat 83039 83071 66 + . . scaffold1411 GLEAN promoter 88338 89337 0.750194 - . ID=CGI_10009186; scaffold1411 TRF Tandem_Repeat 88845 88894 91 + . . scaffold1411 GLEAN mRNA 104845 107727 1 - . ID=CGI_10009187; scaffold1411 GLEAN promoter 107728 108727 1 - . ID=CGI_10009187; scaffold1411 TRF Tandem_Repeat 113911 113945 70 + . . scaffold1411 TRF Tandem_Repeat 117610 117639 60 + . . scaffold1411 WUBlastX LTR_Gypsy 119835 120512 74 + . . scaffold1411 WUBlastX LTR_Gypsy-Cigr 119835 120212 105 + . . scaffold1411 WUBlastX LTR_Gypsy 120572 124228 2001 + . . scaffold1411 WUBlastX LTR_Gypsy-Cigr 121268 124207 2172 + . . scaffold1411 WUBlastX LTR_Gypsy 123536 124405 167 + . . scaffold1411 GLEAN promoter 123888 124887 0.588821 + . ID=CGI_10009188; scaffold1411 GLEAN mRNA 124888 125817 0.588821 + . ID=CGI_10009188; scaffold1411 GLEAN mRNA 127939 133635 0.732019 - . ID=CGI_10009190; scaffold1411 TRF Tandem_Repeat 128789 128815 54 + . . scaffold1411 TRF Tandem_Repeat 128895 128935 82 + . . scaffold1411 GLEAN promoter 133636 134635 0.732019 - . ID=CGI_10009190; scaffold1411 TRF Tandem_Repeat 135665 135705 64 + . . scaffold1411 GLEAN mRNA 136576 147705 0.650467 - . ID=CGI_10009191; scaffold1411 TRF Tandem_Repeat 138664 138705 84 + . . scaffold1411 TRF Tandem_Repeat 140900 140959 104 + . . scaffold1411 TRF Tandem_Repeat 141070 141115 92 + . . scaffold1411 GLEAN promoter 147706 148705 0.650467 - . ID=CGI_10009191; scaffold1411 TRF Tandem_Repeat 150194 150464 230 + . . scaffold1411 TRF Tandem_Repeat 150224 150464 103 + . . scaffold1411 TRF Tandem_Repeat 152813 152872 104 + . . scaffold1411 GLEAN mRNA 154900 160821 0.682042 - . ID=CGI_10009192; scaffold1411 TRF Tandem_Repeat 155127 155170 79 + . . scaffold1411 GLEAN promoter 160822 161821 0.682042 - . ID=CGI_10009192; scaffold1411 TRF Tandem_Repeat 161309 161395 95 + . . scaffold1411 TRF Tandem_Repeat 161475 161648 177 + . . scaffold1411 TRF Tandem_Repeat 161475 161648 195 + . . scaffold1411 TRF Tandem_Repeat 165302 165337 72 + . . scaffold1411 GLEAN promoter 171916 172915 0.659429 + . ID=CGI_10009193; scaffold1411 GLEAN mRNA 172916 179846 0.659429 + . ID=CGI_10009193; scaffold1411 GLEAN promoter 183160 184159 0.556716 + . ID=CGI_10009194; scaffold1411 GLEAN mRNA 184160 208554 0.556716 + . ID=CGI_10009194; scaffold1411 GLEAN promoter 208611 209610 0.651737 + . ID=CGI_10009195; scaffold1411 TRF Tandem_Repeat 208616 209522 1110 + . . scaffold1411 GLEAN mRNA 209611 223883 0.651737 + . ID=CGI_10009195; scaffold1413 GLEAN mRNA 1786 11035 0.999972 - . ID=CGI_10002017; scaffold1413 GLEAN promoter 11036 12035 0.999972 - . ID=CGI_10002017; scaffold1413 GLEAN promoter 24383 25382 1 + . ID=CGI_10002018; scaffold1413 GLEAN mRNA 25383 34157 1 + . ID=CGI_10002018; scaffold1414 GLEAN mRNA 4943 8014 0.999941 - . ID=CGI_10000686; scaffold1414 GLEAN promoter 8015 8535 0.999941 - . ID=CGI_10000686; scaffold1415 GLEAN mRNA 2066 13539 0.987598 - . ID=CGI_10001474; scaffold1415 GLEAN promoter 13540 14539 0.987598 - . ID=CGI_10001474; scaffold1415 GLEAN promoter 19110 20109 0.999451 + . ID=CGI_10001475; scaffold1415 GLEAN mRNA 20110 20397 0.999451 + . ID=CGI_10001475; scaffold1416 GLEAN mRNA 1391 1645 0.996109 - . ID=CGI_10000274; scaffold1416 GLEAN promoter 1646 2645 0.996109 - . ID=CGI_10000274; scaffold1417 GLEAN promoter 11062 12061 0.997075 + . ID=CGI_10005066; scaffold1417 GLEAN mRNA 12062 13572 0.997075 + . ID=CGI_10005066; scaffold1417 GLEAN promoter 12635 13634 1 + . ID=CGI_10005067; scaffold1417 GLEAN promoter 13226 14225 0.999372 + . ID=CGI_10005068; scaffold1417 GLEAN mRNA 13635 14177 1 + . ID=CGI_10005067; scaffold1417 GLEAN mRNA 14226 14561 0.999372 + . ID=CGI_10005068; scaffold1417 GLEAN promoter 15568 16567 0.617291 + . ID=CGI_10005069; scaffold1417 GLEAN mRNA 16568 16741 0.617291 + . ID=CGI_10005069; scaffold1417 WUBlastX DNA_Sola 18087 18245 52 + . . scaffold1417 TRF Tandem_Repeat 24980 25014 70 + . . scaffold1417 WUBlastX LTR_Gypsy 34600 35211 44 + . . scaffold1417 WUBlastX LTR_Gypsy 34711 35328 55 + . . scaffold1417 WUBlastX LTR_Copia 35104 35373 53 + . . scaffold1417 GLEAN promoter 35257 36256 0.940872 + . ID=CGI_10005070; scaffold1417 GLEAN mRNA 36257 36448 0.940872 + . ID=CGI_10005070; scaffold1417 WUBlastX LINE_RTE-X 37960 38439 193 + . . scaffold1417 WUBlastX LINE_RTE-X 38410 38700 65 + . . scaffold1417 WUBlastX LINE_RTE-X 38536 38760 66 + . . scaffold1417 TRF Tandem_Repeat 46366 46701 142 + . . scaffold1417 TRF Tandem_Repeat 46373 46701 424 + . . scaffold1417 TRF Tandem_Repeat 46373 46701 442 + . . scaffold1417 TRF Tandem_Repeat 54274 54360 52 + . . scaffold1417 WUBlastX DNA_TcMar-Tc1 56772 56987 104 + . . scaffold1417 WUBlastX DNA_TcMar-Tc1 56781 57026 52 + . . scaffold1417 WUBlastX DNA_TcMar-Tc1 57031 57318 96 + . . scaffold1417 GLEAN promoter 59657 60656 0.63127 + . ID=CGI_10005071; scaffold1417 TRF Tandem_Repeat 59793 60053 255 + . . scaffold1417 GLEAN mRNA 60657 68034 0.63127 + . ID=CGI_10005071; scaffold1417 WUBlastX DNA_hAT-hATw 73135 74322 122 - . . scaffold1417 WUBlastX DNA_hAT-hATw 73357 74307 169 - . . scaffold1417 WUBlastX DNA_hAT-hATw 74319 74477 75 - . . scaffold1417 WUBlastX DNA_hAT-hATw 74319 74795 50 - . . scaffold1417 WUBlastX DNA_hAT-hATw 74670 75152 126 - . . scaffold1417 TRF Tandem_Repeat 78360 78427 64 + . . scaffold1417 TRF Tandem_Repeat 78360 78419 84 + . . scaffold1417 TRF Tandem_Repeat 78369 78428 75 + . . scaffold1417 TRF Tandem_Repeat 80840 80890 102 + . . scaffold1417 WUBlastX DNA_Harbinger 100275 100349 73 - . . scaffold1417 WUBlastX DNA_Harbinger 100337 100918 591 - . . scaffold1417 WUBlastX DNA_Harbinger 100861 101526 493 - . . scaffold1417 TRF Tandem_Repeat 105531 105750 93 + . . scaffold1417 TRF Tandem_Repeat 105619 105896 191 + . . scaffold1417 TRF Tandem_Repeat 105627 105791 71 + . . scaffold1417 TRF Tandem_Repeat 105629 105900 211 + . . scaffold1418 GLEAN promoter 1 11 1 + . ID=CGI_10001496; scaffold1418 GLEAN mRNA 12 632 1 + . ID=CGI_10001496; scaffold1418 TRF Tandem_Repeat 678 987 476 + . . scaffold1418 TRF Tandem_Repeat 678 987 476 + . . scaffold1418 GLEAN promoter 997 1996 0.999675 + . ID=CGI_10001497; scaffold1418 GLEAN mRNA 1997 9117 0.999675 + . ID=CGI_10001497; scaffold1418 TRF Tandem_Repeat 8052 8105 108 + . . scaffold1418 TRF Tandem_Repeat 8743 8835 150 + . . scaffold1418 GLEAN promoter 12969 13968 0.999965 + . ID=CGI_10001498; scaffold1418 GLEAN mRNA 13969 14844 0.999965 + . ID=CGI_10001498; scaffold1418 WUBlastX DNA_Kolobok-IS4 14005 14370 39 + . . scaffold1418 WUBlastX DNA_Kolobok-IS4 14704 14841 78 + . . scaffold1418 WUBlastX DNA_IS4EU 16572 16769 44 + . . scaffold1418 WUBlastX DNA_Kolobok-IS4 16742 17404 162 + . . scaffold1418 WUBlastX DNA_IS4EU 17700 18272 373 - . . scaffold1418 WUBlastX DNA_IS4EU 17706 18395 225 - . . scaffold1418 WUBlastX DNA_Kolobok-IS4 18284 18595 84 - . . scaffold1418 WUBlastX DNA_IS4EU 18287 18667 63 - . . scaffold1418 WUBlastX DNA_IS4EU 19213 19563 38 - . . scaffold1418 WUBlastX DNA_hAT-Tip100 19333 19563 54 - . . scaffold1418 TRF Tandem_Repeat 22256 22296 82 + . . scaffold1419 TRF Tandem_Repeat 11235 11280 56 + . . scaffold1419 TRF Tandem_Repeat 11235 11301 89 + . . scaffold1419 TRF Tandem_Repeat 11242 11301 75 + . . scaffold1419 WUBlastX LTR_Gypsy 12139 12216 37 - . . scaffold1419 WUBlastX LTR_Gypsy 12189 12302 63 - . . scaffold1419 WUBlastX LTR_Gypsy 12219 12302 65 - . . scaffold1419 WUBlastX LTR_Gypsy 12287 12424 67 + . . scaffold1419 GLEAN mRNA 15962 93471 0.812498 - . ID=CGI_10005452; scaffold1419 TRF Tandem_Repeat 20699 20755 114 + . . scaffold1419 TRF Tandem_Repeat 27161 27230 131 + . . scaffold1419 TRF Tandem_Repeat 27164 27231 82 + . . scaffold1419 TRF Tandem_Repeat 36932 37737 731 + . . scaffold1419 TRF Tandem_Repeat 37082 37797 512 + . . scaffold1419 TRF Tandem_Repeat 37610 37790 143 + . . scaffold1419 TRF Tandem_Repeat 49689 50358 695 + . . scaffold1419 TRF Tandem_Repeat 49695 50354 581 + . . scaffold1419 TRF Tandem_Repeat 49772 50358 661 + . . scaffold1419 TRF Tandem_Repeat 69198 69243 65 + . . scaffold1419 TRF Tandem_Repeat 69244 69278 70 + . . scaffold1419 TRF Tandem_Repeat 77074 77216 94 + . . scaffold1419 WUBlastX DNA_TcMar-Marin 80925 81260 83 + . . scaffold1419 TRF Tandem_Repeat 86002 86048 51 + . . scaffold1419 GLEAN promoter 93472 94471 0.812498 - . ID=CGI_10005452; scaffold1419 GLEAN mRNA 101376 123223 0.492606 - . ID=CGI_10005453; scaffold1419 TRF Tandem_Repeat 107043 107072 60 + . . scaffold1419 GLEAN promoter 123224 124223 0.492606 - . ID=CGI_10005453; scaffold142 TRF Tandem_Repeat 4580 4613 50 + . . scaffold142 GLEAN promoter 39845 40844 0.998077 + . ID=CGI_10026753; scaffold142 GLEAN mRNA 40845 42533 0.998077 + . ID=CGI_10026753; scaffold142 GLEAN mRNA 45031 46320 0.497405 - . ID=CGI_10026754; scaffold142 TRF Tandem_Repeat 45530 45621 96 + . . scaffold142 TRF Tandem_Repeat 45682 45856 165 + . . scaffold142 TRF Tandem_Repeat 45896 45992 117 + . . scaffold142 TRF Tandem_Repeat 46061 46161 96 + . . scaffold142 GLEAN promoter 46321 47320 0.497405 - . ID=CGI_10026754; scaffold142 WUBlastX LTR_ERVK 46898 47146 54 - . . scaffold142 TRF Tandem_Repeat 47585 47959 448 + . . scaffold142 TRF Tandem_Repeat 48416 48732 181 + . . scaffold142 TRF Tandem_Repeat 48431 48733 128 + . . scaffold142 WUBlastX LTR_Gypsy 51828 52367 206 - . . scaffold142 WUBlastX LTR_Gypsy 52005 52376 227 - . . scaffold142 WUBlastX LTR_Gypsy 52354 52485 119 - . . scaffold142 WUBlastX LTR_Gypsy 52366 52587 81 - . . scaffold142 WUBlastX LTR_Gypsy 52372 52551 101 - . . scaffold142 WUBlastX LTR_Gypsy 53528 53764 31 - . . scaffold142 WUBlastX LTR_Gypsy 53591 56629 1760 - . . scaffold142 WUBlastX LTR_Gypsy 56304 56720 237 - . . scaffold142 WUBlastX LTR_Gypsy 56304 56807 103 - . . scaffold142 TRF Tandem_Repeat 65660 65761 81 + . . scaffold142 TRF Tandem_Repeat 65660 65761 67 + . . scaffold142 TRF Tandem_Repeat 75161 75188 56 + . . scaffold142 TRF Tandem_Repeat 75444 75525 164 + . . scaffold142 TRF Tandem_Repeat 75532 75570 78 + . . scaffold142 TRF Tandem_Repeat 80373 80418 92 + . . scaffold142 WUBlastX DNA_TcMar-Marin 95733 95834 24 + . . scaffold142 WUBlastX DNA_TcMar-Marin 95754 95831 28 + . . scaffold142 WUBlastX DNA_TcMar-Marin 95825 96112 146 + . . scaffold142 WUBlastX DNA_TcMar-Marin 96248 96592 99 + . . scaffold142 WUBlastX DNA_TcMar-Marin 96302 96592 99 + . . scaffold142 WUBlastX DNA_TcMar-Marin 96359 96589 116 + . . scaffold142 WUBlastX DNA_TcMar-Marin 96413 96592 119 + . . scaffold142 TRF Tandem_Repeat 115815 115891 113 + . . scaffold142 WUBlastX LINE_Penelope 117001 117384 77 + . . scaffold142 WUBlastX LINE_Penelope 117115 117462 84 + . . scaffold142 TRF Tandem_Repeat 129086 129116 62 + . . scaffold142 TRF Tandem_Repeat 140194 140219 52 + . . scaffold142 WUBlastX LINE_L1-Tx1 146225 146899 145 - . . scaffold142 WUBlastX LINE_L1 146258 147028 42 - . . scaffold142 TRF Tandem_Repeat 149274 149310 74 + . . scaffold142 TRF Tandem_Repeat 153992 154018 54 + . . scaffold142 WUBlastX LINE_L1-Tx1 156847 157017 57 - . . scaffold142 WUBlastX LINE_L1-Tx1 156856 156996 81 - . . scaffold142 GLEAN mRNA 157089 157685 0.986937 - . ID=CGI_10026755; scaffold142 WUBlastX LINE_CR1 157681 158349 220 - . . scaffold142 GLEAN promoter 157686 158685 0.986937 - . ID=CGI_10026755; scaffold142 TRF Tandem_Repeat 168355 168439 116 + . . scaffold142 WUBlastX DNA_TcMar-Marin 174808 175002 63 + . . scaffold142 WUBlastX LINE_Penelope 178281 178703 123 + . . scaffold142 WUBlastX LINE_Penelope 178299 178829 116 + . . scaffold142 GLEAN mRNA 185184 212005 0.449794 - . ID=CGI_10026756; scaffold142 TRF Tandem_Repeat 186181 186425 118 + . . scaffold142 TRF Tandem_Repeat 189276 189301 52 + . . scaffold142 TRF Tandem_Repeat 196473 196561 108 + . . scaffold142 TRF Tandem_Repeat 197467 197527 122 + . . scaffold142 TRF Tandem_Repeat 203098 203262 178 + . . scaffold142 TRF Tandem_Repeat 203098 203292 173 + . . scaffold142 TRF Tandem_Repeat 206220 206274 110 + . . scaffold142 TRF Tandem_Repeat 206272 206314 86 + . . scaffold142 TRF Tandem_Repeat 209101 209136 54 + . . scaffold142 GLEAN promoter 209515 210514 1 + . ID=CGI_10026757; scaffold142 GLEAN mRNA 210515 212254 1 + . ID=CGI_10026757; scaffold142 GLEAN promoter 212006 213005 0.449794 - . ID=CGI_10026756; scaffold142 GLEAN mRNA 212051 212419 0.477529 - . ID=CGI_10026758; scaffold142 GLEAN promoter 212420 213419 0.477529 - . ID=CGI_10026758; scaffold142 TRF Tandem_Repeat 213411 214121 955 + . . scaffold142 GLEAN mRNA 215835 234072 0.998793 - . ID=CGI_10026759; scaffold142 TRF Tandem_Repeat 218505 218818 499 + . . scaffold142 TRF Tandem_Repeat 218511 219021 336 + . . scaffold142 TRF Tandem_Repeat 218790 218978 199 + . . scaffold142 GLEAN promoter 225750 226749 0.969071 + . ID=CGI_10026760; scaffold142 GLEAN mRNA 226750 254431 0.969071 + . ID=CGI_10026760; scaffold142 GLEAN promoter 234073 235072 0.998793 - . ID=CGI_10026759; scaffold142 WUBlastX LINE_CR1 235848 236693 504 + . . scaffold142 WUBlastX LINE_CR1 236693 237352 249 + . . scaffold142 WUBlastX LINE_CR1 236795 238918 1260 + . . scaffold142 WUBlastX LINE_I 237191 239224 241 + . . scaffold142 WUBlastX LINE_CR1 237398 238918 1294 + . . scaffold142 TRF Tandem_Repeat 243045 243069 50 + . . scaffold142 TRF Tandem_Repeat 243207 244120 943 + . . scaffold142 TRF Tandem_Repeat 271286 271383 65 + . . scaffold142 WUBlastX LTR_DIRS 297291 297770 215 + . . scaffold142 WUBlastX LTR_DIRS 297781 298134 118 + . . scaffold142 WUBlastX LTR_DIRS 301086 301175 79 + . . scaffold142 TRF Tandem_Repeat 301589 301636 96 + . . scaffold142 TRF Tandem_Repeat 303869 303900 64 + . . scaffold142 TRF Tandem_Repeat 305364 305390 54 + . . scaffold142 TRF Tandem_Repeat 305388 305418 62 + . . scaffold142 TRF Tandem_Repeat 305797 305848 95 + . . scaffold142 TRF Tandem_Repeat 310392 310452 122 + . . scaffold142 TRF Tandem_Repeat 316580 316633 108 + . . scaffold142 WUBlastX LTR_Gypsy-Cigr 321218 321727 152 + . . scaffold142 TRF Tandem_Repeat 323769 323826 98 + . . scaffold142 WUBlastX LINE_CR1-L2 329979 330287 43 - . . scaffold142 WUBlastX LINE_CR1 330219 330422 47 - . . scaffold142 WUBlastX LINE_CR1-L2 330430 330528 44 - . . scaffold142 WUBlastX DNA_TcMar-Tc1 339821 340735 47 + . . scaffold142 WUBlastX DNA_TcMar-ISRm1 340007 340702 117 + . . scaffold142 WUBlastX DNA_TcMar-Ant1 340295 340828 133 + . . scaffold142 TRF Tandem_Repeat 355296 355345 100 + . . scaffold142 TRF Tandem_Repeat 365949 366015 89 + . . scaffold142 TRF Tandem_Repeat 366484 366523 71 + . . scaffold142 GLEAN mRNA 368861 391926 0.649901 - . ID=CGI_10026761; scaffold142 TRF Tandem_Repeat 377551 377604 55 + . . scaffold142 GLEAN promoter 391927 392926 0.649901 - . ID=CGI_10026761; scaffold142 TRF Tandem_Repeat 393159 393283 196 + . . scaffold142 TRF Tandem_Repeat 400256 400322 89 + . . scaffold142 TRF Tandem_Repeat 402712 402762 93 + . . scaffold142 TRF Tandem_Repeat 402968 403010 61 + . . scaffold142 TRF Tandem_Repeat 403505 403567 81 + . . scaffold142 TRF Tandem_Repeat 421472 421548 154 + . . scaffold142 GLEAN mRNA 433063 433925 0.893171 - . ID=CGI_10026762; scaffold142 GLEAN promoter 433926 434925 0.893171 - . ID=CGI_10026762; scaffold142 TRF Tandem_Repeat 435323 435448 198 + . . scaffold142 TRF Tandem_Repeat 435755 435808 108 + . . scaffold142 TRF Tandem_Repeat 458301 458391 103 + . . scaffold142 TRF Tandem_Repeat 462608 462761 92 + . . scaffold142 TRF Tandem_Repeat 463210 463242 66 + . . scaffold142 TRF Tandem_Repeat 463240 463307 136 + . . scaffold142 TRF Tandem_Repeat 466611 466694 132 + . . scaffold142 GLEAN promoter 471131 472130 1 + . ID=CGI_10026763; scaffold142 GLEAN mRNA 472131 473116 1 + . ID=CGI_10026763; scaffold142 GLEAN promoter 474583 475582 0.544851 + . ID=CGI_10026764; scaffold142 GLEAN mRNA 475583 500512 0.544851 + . ID=CGI_10026764; scaffold142 TRF Tandem_Repeat 480544 480571 56 + . . scaffold142 TRF Tandem_Repeat 497420 497471 97 + . . scaffold142 TRF Tandem_Repeat 503911 504071 108 + . . scaffold142 TRF Tandem_Repeat 504140 504268 71 + . . scaffold142 TRF Tandem_Repeat 507963 508040 72 + . . scaffold142 WUBlastX LTR_Gypsy 514264 514611 109 - . . scaffold142 WUBlastX LTR_Gypsy 514345 514611 153 - . . scaffold142 WUBlastX LTR_Gypsy 514533 515057 166 - . . scaffold142 WUBlastX LTR_Gypsy 514557 514964 254 - . . scaffold142 WUBlastX LTR_Gypsy 514948 515091 30 - . . scaffold142 TRF Tandem_Repeat 524483 524568 145 + . . scaffold142 TRF Tandem_Repeat 532084 532132 98 + . . scaffold142 TRF Tandem_Repeat 532259 532317 73 + . . scaffold142 TRF Tandem_Repeat 539777 539910 117 + . . scaffold142 TRF Tandem_Repeat 550480 550519 80 + . . scaffold142 GLEAN promoter 555571 556570 0.998733 + . ID=CGI_10026766; scaffold142 GLEAN mRNA 556097 556711 0.74647 - . ID=CGI_10026765; scaffold142 GLEAN mRNA 556571 581193 0.998733 + . ID=CGI_10026766; scaffold142 GLEAN promoter 556712 557711 0.74647 - . ID=CGI_10026765; scaffold142 TRF Tandem_Repeat 570523 570649 87 + . . scaffold142 TRF Tandem_Repeat 570558 570666 81 + . . scaffold142 TRF Tandem_Repeat 570581 570666 82 + . . scaffold142 TRF Tandem_Repeat 571956 572001 92 + . . scaffold142 TRF Tandem_Repeat 580907 580946 73 + . . scaffold142 TRF Tandem_Repeat 582627 582680 108 + . . scaffold142 TRF Tandem_Repeat 585854 585964 123 + . . scaffold142 TRF Tandem_Repeat 588315 588358 88 + . . scaffold142 GLEAN promoter 588371 589370 0.726025 + . ID=CGI_10026767; scaffold142 TRF Tandem_Repeat 588925 589137 198 + . . scaffold142 TRF Tandem_Repeat 588985 589137 216 + . . scaffold142 GLEAN mRNA 589371 592848 0.726025 + . ID=CGI_10026767; scaffold142 TRF Tandem_Repeat 590959 590997 60 + . . scaffold142 TRF Tandem_Repeat 591495 591555 122 + . . scaffold142 TRF Tandem_Repeat 603006 603063 116 + . . scaffold142 TRF Tandem_Repeat 603351 603400 100 + . . scaffold142 TRF Tandem_Repeat 605629 605684 112 + . . scaffold142 TRF Tandem_Repeat 616597 616690 133 + . . scaffold142 TRF Tandem_Repeat 617654 619370 2206 + . . scaffold142 TRF Tandem_Repeat 617654 619370 2263 + . . scaffold142 TRF Tandem_Repeat 619568 619609 50 + . . scaffold142 TRF Tandem_Repeat 621815 622087 376 + . . scaffold142 TRF Tandem_Repeat 627981 628728 1000 + . . scaffold142 TRF Tandem_Repeat 630199 630240 50 + . . scaffold142 TRF Tandem_Repeat 633956 634002 94 + . . scaffold142 TRF Tandem_Repeat 640553 641424 1239 + . . scaffold142 TRF Tandem_Repeat 649165 649480 406 + . . scaffold142 GLEAN promoter 651587 652586 0.927019 + . ID=CGI_10026768; scaffold142 GLEAN mRNA 652587 657482 0.927019 + . ID=CGI_10026768; scaffold142 TRF Tandem_Repeat 656211 656968 1026 + . . scaffold142 TRF Tandem_Repeat 657957 658162 288 + . . scaffold142 TRF Tandem_Repeat 658310 658638 478 + . . scaffold142 TRF Tandem_Repeat 658310 658639 488 + . . scaffold142 TRF Tandem_Repeat 663972 664035 128 + . . scaffold142 TRF Tandem_Repeat 664472 664515 88 + . . scaffold142 TRF Tandem_Repeat 668078 668153 152 + . . scaffold142 TRF Tandem_Repeat 674287 674427 106 + . . scaffold142 TRF Tandem_Repeat 675426 675559 101 + . . scaffold142 TRF Tandem_Repeat 698900 699298 557 + . . scaffold142 TRF Tandem_Repeat 703779 703966 112 + . . scaffold142 TRF Tandem_Repeat 704967 704996 60 + . . scaffold142 TRF Tandem_Repeat 708646 708778 171 + . . scaffold142 WUBlastX LTR_Ngaro 710530 710895 192 + . . scaffold142 WUBlastX LTR_Ngaro 711024 711329 113 + . . scaffold142 WUBlastX LTR_Ngaro 711388 711738 55 + . . scaffold142 WUBlastX LTR_Ngaro 711466 711738 59 + . . scaffold142 WUBlastX LTR_Ngaro 711684 712127 166 + . . scaffold142 TRF Tandem_Repeat 713066 713193 76 + . . scaffold142 TRF Tandem_Repeat 713073 713161 50 + . . scaffold142 TRF Tandem_Repeat 714419 714505 174 + . . scaffold142 TRF Tandem_Repeat 716092 716126 52 + . . scaffold142 TRF Tandem_Repeat 721196 721338 156 + . . scaffold142 TRF Tandem_Repeat 721224 721361 107 + . . scaffold142 TRF Tandem_Repeat 722272 722386 63 + . . scaffold142 TRF Tandem_Repeat 722282 722473 228 + . . scaffold142 TRF Tandem_Repeat 722282 722515 244 + . . scaffold142 GLEAN promoter 741581 742580 0.999676 + . ID=CGI_10026769; scaffold142 GLEAN mRNA 742581 749967 0.999676 + . ID=CGI_10026769; scaffold142 WUBlastX LINE_L2 746524 746997 26 + . . scaffold142 WUBlastX LINE_CR1-L2 746806 746973 39 + . . scaffold142 TRF Tandem_Repeat 747293 747361 138 + . . scaffold142 WUBlastX LINE_CR1 750357 750473 21 + . . scaffold142 WUBlastX LINE_CR1 750424 750552 53 + . . scaffold142 WUBlastX LINE_CR1-L2 750463 750570 56 + . . scaffold142 WUBlastX LINE_L2 750584 750814 61 + . . scaffold142 WUBlastX LINE_L2 750584 750859 28 + . . scaffold142 WUBlastX LINE_CR1 752765 752845 38 + . . scaffold142 WUBlastX LINE_L2 754799 755044 71 + . . scaffold142 TRF Tandem_Repeat 767752 767801 100 + . . scaffold142 GLEAN promoter 780198 781197 0.996408 + . ID=CGI_10026770; scaffold142 GLEAN mRNA 781198 782202 0.996408 + . ID=CGI_10026770; scaffold142 TRF Tandem_Repeat 783622 784219 493 + . . scaffold142 TRF Tandem_Repeat 783622 784225 505 + . . scaffold142 TRF Tandem_Repeat 789714 790619 875 + . . scaffold142 TRF Tandem_Repeat 796168 796209 57 + . . scaffold142 TRF Tandem_Repeat 796168 796221 64 + . . scaffold142 GLEAN mRNA 803107 813735 0.99984 - . ID=CGI_10026771; scaffold142 GLEAN promoter 813736 814735 0.99984 - . ID=CGI_10026771; scaffold142 GLEAN mRNA 814952 818235 1 - . ID=CGI_10026772; scaffold142 GLEAN promoter 818236 819235 1 - . ID=CGI_10026772; scaffold142 TRF Tandem_Repeat 825419 825518 98 + . . scaffold142 GLEAN promoter 831713 832712 0.841403 + . ID=CGI_10026773; scaffold142 GLEAN mRNA 832713 854286 0.841403 + . ID=CGI_10026773; scaffold142 TRF Tandem_Repeat 853184 853230 94 + . . scaffold142 GLEAN promoter 860879 861878 0.397218 + . ID=CGI_10026774; scaffold142 GLEAN mRNA 861879 865861 0.397218 + . ID=CGI_10026774; scaffold142 TRF Tandem_Repeat 863091 863136 92 + . . scaffold142 WUBlastX DNA_TcMar-Tc1 866055 866228 22 - . . scaffold142 WUBlastX DNA_TcMar-Tc1 866225 866392 63 - . . scaffold142 WUBlastX DNA_TcMar-Tc1 866552 866656 20 - . . scaffold142 TRF Tandem_Repeat 871596 871838 405 + . . scaffold142 TRF Tandem_Repeat 871600 871882 314 + . . scaffold142 TRF Tandem_Repeat 873678 873782 54 + . . scaffold142 TRF Tandem_Repeat 873679 873728 55 + . . scaffold142 TRF Tandem_Repeat 874045 874123 131 + . . scaffold142 TRF Tandem_Repeat 875140 875168 58 + . . scaffold142 WUBlastX DNA_TcMar-Tc1 875189 875431 87 - . . scaffold142 GLEAN promoter 881955 882954 0.999993 + . ID=CGI_10026775; scaffold142 GLEAN mRNA 882955 887865 0.999993 + . ID=CGI_10026775; scaffold142 TRF Tandem_Repeat 888066 888126 122 + . . scaffold142 GLEAN mRNA 888958 909635 0.813845 - . ID=CGI_10026776; scaffold142 GLEAN promoter 909636 910635 0.813845 - . ID=CGI_10026776; scaffold142 TRF Tandem_Repeat 911042 911085 88 + . . scaffold142 TRF Tandem_Repeat 911427 911467 73 + . . scaffold142 TRF Tandem_Repeat 916163 916220 107 + . . scaffold142 GLEAN mRNA 919758 920060 0.998975 - . ID=CGI_10026777; scaffold142 GLEAN promoter 920061 921060 0.998975 - . ID=CGI_10026777; scaffold142 GLEAN mRNA 920142 920666 0.590095 - . ID=CGI_10026778; scaffold142 GLEAN promoter 920667 921666 0.590095 - . ID=CGI_10026778; scaffold142 WUBlastX DNA_Harbinger 923910 924140 42 - . . scaffold142 WUBlastX DNA_Harbinger 923943 924086 72 - . . scaffold142 WUBlastX DNA_Harbinger 924717 924893 20 - . . scaffold142 WUBlastX DNA_Harbinger 924717 924857 44 - . . scaffold142 GLEAN promoter 929810 930809 0.997747 + . ID=CGI_10026779; scaffold142 GLEAN mRNA 930810 932537 0.997747 + . ID=CGI_10026779; scaffold142 TRF Tandem_Repeat 934088 934131 88 + . . scaffold142 GLEAN promoter 942810 943809 0.999814 + . ID=CGI_10026780; scaffold142 GLEAN mRNA 943810 944256 0.999814 + . ID=CGI_10026780; scaffold142 TRF Tandem_Repeat 944739 944773 52 + . . scaffold142 TRF Tandem_Repeat 947183 947213 53 + . . scaffold142 TRF Tandem_Repeat 948057 948171 230 + . . scaffold142 GLEAN promoter 948651 949650 0.802649 + . ID=CGI_10026781; scaffold142 GLEAN mRNA 949651 954198 0.802649 + . ID=CGI_10026781; scaffold142 GLEAN mRNA 963818 985587 0.999623 - . ID=CGI_10026782; scaffold142 TRF Tandem_Repeat 966329 966417 126 + . . scaffold142 TRF Tandem_Repeat 968200 968226 54 + . . scaffold142 TRF Tandem_Repeat 970131 970179 98 + . . scaffold142 WUBlastX DNA_MuDR 980422 982260 439 + . . scaffold142 WUBlastX DNA_MuDR 980749 982617 440 + . . scaffold142 WUBlastX DNA_NOF? 982754 983443 118 + . . scaffold142 GLEAN promoter 985588 986587 0.999623 - . ID=CGI_10026782; scaffold142 GLEAN promoter 987947 988946 0.992639 + . ID=CGI_10026783; scaffold142 GLEAN mRNA 988947 1002463 0.992639 + . ID=CGI_10026783; scaffold142 TRF Tandem_Repeat 1002386 1002439 50 + . . scaffold142 TRF Tandem_Repeat 1008661 1008718 116 + . . scaffold142 TRF Tandem_Repeat 1013681 1013722 84 + . . scaffold142 GLEAN mRNA 1016684 1042183 0.999675 - . ID=CGI_10026784; scaffold142 TRF Tandem_Repeat 1016894 1016936 58 + . . scaffold142 TRF Tandem_Repeat 1039657 1039694 76 + . . scaffold142 GLEAN promoter 1042184 1043183 0.999675 - . ID=CGI_10026784; scaffold142 TRF Tandem_Repeat 1042900 1042934 70 + . . scaffold142 TRF Tandem_Repeat 1043129 1043161 66 + . . scaffold142 TRF Tandem_Repeat 1043543 1043608 132 + . . scaffold142 TRF Tandem_Repeat 1044807 1044857 84 + . . scaffold142 TRF Tandem_Repeat 1046149 1046186 76 + . . scaffold142 WUBlastX LINE_L2 1046194 1046277 31 - . . scaffold142 WUBlastX LINE_L2 1046307 1046465 34 - . . scaffold142 TRF Tandem_Repeat 1047100 1047186 149 + . . scaffold142 GLEAN mRNA 1048988 1077870 1 - . ID=CGI_10026785; scaffold142 TRF Tandem_Repeat 1051841 1051867 54 + . . scaffold142 TRF Tandem_Repeat 1057167 1057203 65 + . . scaffold142 GLEAN promoter 1063085 1064084 0.618185 + . ID=CGI_10026786; scaffold142 GLEAN mRNA 1064085 1064249 0.618185 + . ID=CGI_10026786; scaffold142 TRF Tandem_Repeat 1065884 1065927 81 + . . scaffold142 TRF Tandem_Repeat 1071486 1071515 60 + . . scaffold142 TRF Tandem_Repeat 1075620 1075648 58 + . . scaffold142 GLEAN promoter 1077871 1078870 1 - . ID=CGI_10026785; scaffold142 TRF Tandem_Repeat 1090971 1091181 248 + . . scaffold142 TRF Tandem_Repeat 1091814 1091849 54 + . . scaffold142 GLEAN promoter 1098533 1099532 0.999415 + . ID=CGI_10026787; scaffold142 GLEAN mRNA 1099533 1123286 0.999415 + . ID=CGI_10026787; scaffold142 TRF Tandem_Repeat 1107443 1107469 54 + . . scaffold142 TRF Tandem_Repeat 1113018 1113364 480 + . . scaffold142 GLEAN mRNA 1124242 1127408 0.999661 - . ID=CGI_10026788; scaffold142 GLEAN promoter 1126726 1127725 1 + . ID=CGI_10026789; scaffold142 GLEAN promoter 1127409 1128408 0.999661 - . ID=CGI_10026788; scaffold142 GLEAN mRNA 1127726 1132687 1 + . ID=CGI_10026789; scaffold142 GLEAN promoter 1131832 1132831 0.999918 + . ID=CGI_10026790; scaffold142 GLEAN mRNA 1132832 1143622 0.999918 + . ID=CGI_10026790; scaffold142 GLEAN mRNA 1133655 1136382 0.999351 - . ID=CGI_10026791; scaffold142 GLEAN promoter 1136383 1137382 0.999351 - . ID=CGI_10026791; scaffold142 GLEAN mRNA 1145682 1146530 0.999999 - . ID=CGI_10026792; scaffold142 GLEAN promoter 1146531 1147530 0.999999 - . ID=CGI_10026792; scaffold142 GLEAN mRNA 1150652 1152367 0.78434 - . ID=CGI_10026793; scaffold142 GLEAN promoter 1152368 1153367 0.78434 - . ID=CGI_10026793; scaffold142 GLEAN promoter 1155257 1156256 0.997592 + . ID=CGI_10026794; scaffold142 GLEAN mRNA 1156257 1159260 0.997592 + . ID=CGI_10026794; scaffold142 GLEAN mRNA 1174754 1175733 0.999999 - . ID=CGI_10026795; scaffold142 GLEAN promoter 1175734 1176733 0.999999 - . ID=CGI_10026795; scaffold142 TRF Tandem_Repeat 1176124 1176302 340 + . . scaffold142 GLEAN mRNA 1176601 1177512 0.996588 - . ID=CGI_10026796; scaffold142 GLEAN promoter 1177513 1178512 0.996588 - . ID=CGI_10026796; scaffold142 WUBlastX DNA_En-Spm 1177775 1179697 1165 - . . scaffold142 TRF Tandem_Repeat 1181457 1181487 62 + . . scaffold142 TRF Tandem_Repeat 1199735 1199764 60 + . . scaffold142 WUBlastX RC_Helitron 1203189 1203569 85 - . . scaffold142 WUBlastX LTR_Gypsy 1209687 1209758 22 + . . scaffold142 WUBlastX LTR_Caulimoviru 1210280 1210939 46 + . . scaffold142 WUBlastX LTR_Gypsy 1210397 1210984 220 + . . scaffold142 WUBlastX LTR_Gypsy 1210517 1211200 159 + . . scaffold142 WUBlastX LTR_Gypsy 1210517 1211041 333 + . . scaffold142 WUBlastX LTR_Gypsy 1211317 1211601 91 + . . scaffold142 WUBlastX LTR_Gypsy 1211410 1211676 92 + . . scaffold142 WUBlastX LTR_Gypsy 1211609 1211692 32 + . . scaffold142 WUBlastX LTR_Gypsy 1211642 1211773 23 + . . scaffold142 WUBlastX DNA_Maverick 1212518 1212997 43 + . . scaffold142 WUBlastX LTR_Gypsy 1212596 1213132 135 + . . scaffold142 WUBlastX LTR_Gypsy 1212605 1213021 274 + . . scaffold142 WUBlastX LTR_Gypsy-Cigr 1213068 1213337 120 + . . scaffold142 GLEAN promoter 1215819 1216818 0.999676 + . ID=CGI_10026797; scaffold142 GLEAN mRNA 1216819 1221683 0.999676 + . ID=CGI_10026797; scaffold142 WUBlastX DNA_Harbinger 1218970 1219668 33 - . . scaffold142 WUBlastX DNA_Harbinger 1219135 1220073 365 - . . scaffold142 WUBlastX LTR_Gypsy 1224207 1224344 21 - . . scaffold142 WUBlastX LTR_Gypsy 1224296 1225336 345 - . . scaffold142 WUBlastX LTR_Gypsy 1224488 1225333 404 - . . scaffold142 WUBlastX LTR_Gypsy 1224638 1225474 216 - . . scaffold142 WUBlastX LTR_Gypsy 1225489 1226337 162 - . . scaffold142 WUBlastX LTR_Gypsy 1225618 1226337 278 - . . scaffold142 WUBlastX LTR_Gypsy-Cigr 1225738 1226313 361 - . . scaffold142 WUBlastX LTR_Gypsy 1225831 1227132 344 - . . scaffold142 WUBlastX LTR_Gypsy 1225834 1226313 430 - . . scaffold142 WUBlastX LTR_Gypsy 1226300 1226803 457 - . . scaffold142 WUBlastX LTR_Gypsy-Cigr 1226812 1227462 230 - . . scaffold142 WUBlastX LTR_Gypsy-Cigr 1226812 1227249 254 - . . scaffold142 WUBlastX LTR_Gypsy 1227662 1227742 25 - . . scaffold142 WUBlastX LTR_Pao 1228461 1229318 696 - . . scaffold142 WUBlastX LTR_Pao 1229309 1229866 360 - . . scaffold142 WUBlastX LTR_Pao 1229869 1230300 56 - . . scaffold142 WUBlastX LTR_Pao 1229998 1230309 223 - . . scaffold142 WUBlastX LTR_Pao 1231212 1231289 24 - . . scaffold142 WUBlastX LTR_Pao 1231307 1231468 61 - . . scaffold142 TRF Tandem_Repeat 1234675 1234728 108 + . . scaffold142 GLEAN promoter 1237618 1238617 0.889602 + . ID=CGI_10026798; scaffold142 TRF Tandem_Repeat 1238489 1238616 177 + . . scaffold142 TRF Tandem_Repeat 1238490 1238575 59 + . . scaffold142 GLEAN mRNA 1238618 1243867 0.889602 + . ID=CGI_10026798; scaffold142 GLEAN promoter 1242870 1243869 0.974028 + . ID=CGI_10026799; scaffold142 WUBlastX DNA_MuDR 1243595 1243918 103 + . . scaffold142 GLEAN mRNA 1243870 1244404 0.974028 + . ID=CGI_10026799; scaffold142 GLEAN promoter 1243952 1244951 0.924755 + . ID=CGI_10026800; scaffold142 GLEAN mRNA 1244952 1245278 0.924755 + . ID=CGI_10026800; scaffold142 WUBlastX LTR_Ngaro 1245424 1245474 31 + . . scaffold142 WUBlastX LTR_Ngaro 1245552 1245980 172 + . . scaffold142 WUBlastX LTR_Ngaro 1246250 1246540 199 + . . scaffold142 WUBlastX LTR_Ngaro 1246546 1246746 48 + . . scaffold142 WUBlastX LTR_Ngaro 1246552 1246701 97 + . . scaffold142 WUBlastX LTR_Gypsy 1251479 1252366 797 - . . scaffold1420 GLEAN promoter 4754 5753 0.378712 + . ID=CGI_10001586; scaffold1420 GLEAN mRNA 5754 9932 0.378712 + . ID=CGI_10001586; scaffold1420 GLEAN mRNA 23264 25366 1 - . ID=CGI_10001587; scaffold1420 GLEAN promoter 25367 26366 1 - . ID=CGI_10001587; scaffold1421 GLEAN promoter 734 1733 0.455576 + . ID=CGI_10000218; scaffold1421 GLEAN mRNA 1734 2705 0.455576 + . ID=CGI_10000218; scaffold1422 GLEAN mRNA 4531 20073 0.556113 - . ID=CGI_10003187; scaffold1422 TRF Tandem_Repeat 6295 6321 54 + . . scaffold1422 TRF Tandem_Repeat 17015 17065 93 + . . scaffold1422 TRF Tandem_Repeat 17679 17704 52 + . . scaffold1422 GLEAN promoter 20074 21073 0.556113 - . ID=CGI_10003187; scaffold1422 TRF Tandem_Repeat 53043 53088 65 + . . scaffold1422 TRF Tandem_Repeat 53347 53419 119 + . . scaffold1422 TRF Tandem_Repeat 53909 53975 89 + . . scaffold1422 TRF Tandem_Repeat 57921 57962 66 + . . scaffold1422 WUBlastX DNA_TcMar-Tc1 64859 65587 20 + . . scaffold1422 WUBlastX DNA_TcMar-Tc1 65125 65832 203 + . . scaffold1423 GLEAN mRNA 5330 6250 0.999998 - . ID=CGI_10025401; scaffold1423 GLEAN promoter 6251 7250 0.999998 - . ID=CGI_10025401; scaffold1423 GLEAN promoter 8068 9067 0.836252 + . ID=CGI_10025402; scaffold1423 GLEAN mRNA 9068 11130 0.836252 + . ID=CGI_10025402; scaffold1423 GLEAN mRNA 13450 32441 0.999998 - . ID=CGI_10025403; scaffold1423 TRF Tandem_Repeat 15275 16018 1215 + . . scaffold1423 TRF Tandem_Repeat 18565 18756 160 + . . scaffold1423 TRF Tandem_Repeat 18570 18758 145 + . . scaffold1423 WUBlastX LINE_RTE-X 23281 23583 80 + . . scaffold1423 WUBlastX LINE_RTE-X 23290 23487 96 + . . scaffold1423 TRF Tandem_Repeat 26616 26972 430 + . . scaffold1423 TRF Tandem_Repeat 27187 27470 261 + . . scaffold1423 GLEAN promoter 32442 33441 0.999998 - . ID=CGI_10025403; scaffold1423 GLEAN promoter 33899 34898 0.725799 + . ID=CGI_10025404; scaffold1423 GLEAN mRNA 34899 42941 0.725799 + . ID=CGI_10025404; scaffold1423 GLEAN promoter 43457 44456 0.999349 + . ID=CGI_10025405; scaffold1423 GLEAN mRNA 44457 53173 0.999349 + . ID=CGI_10025405; scaffold1423 TRF Tandem_Repeat 51009 51038 60 + . . scaffold1423 TRF Tandem_Repeat 52245 52271 54 + . . scaffold1423 TRF Tandem_Repeat 52408 52669 157 + . . scaffold1423 TRF Tandem_Repeat 53492 53559 136 + . . scaffold1423 GLEAN promoter 53856 54855 0.687535 + . ID=CGI_10025406; scaffold1423 GLEAN mRNA 54856 65745 0.687535 + . ID=CGI_10025406; scaffold1423 TRF Tandem_Repeat 64980 65503 565 + . . scaffold1423 TRF Tandem_Repeat 65863 66007 186 + . . scaffold1423 TRF Tandem_Repeat 66963 67056 154 + . . scaffold1423 GLEAN promoter 67473 68472 0.642146 + . ID=CGI_10025407; scaffold1423 GLEAN mRNA 68473 74309 0.642146 + . ID=CGI_10025407; scaffold1423 TRF Tandem_Repeat 69606 69641 72 + . . scaffold1423 TRF Tandem_Repeat 70023 70083 59 + . . scaffold1423 TRF Tandem_Repeat 70031 70093 81 + . . scaffold1423 GLEAN mRNA 74525 74731 0.776794 - . ID=CGI_10025408; scaffold1423 GLEAN promoter 74732 75731 0.776794 - . ID=CGI_10025408; scaffold1423 WUBlastX LINE_L2 77432 77623 32 - . . scaffold1423 WUBlastX LINE_L2 78059 78130 31 - . . scaffold1423 TRF Tandem_Repeat 79232 79701 823 + . . scaffold1423 TRF Tandem_Repeat 80516 80740 164 + . . scaffold1423 TRF Tandem_Repeat 80625 80760 119 + . . scaffold1423 TRF Tandem_Repeat 82464 82533 140 + . . scaffold1423 TRF Tandem_Repeat 82569 82603 61 + . . scaffold1423 GLEAN promoter 82900 83899 0.990927 + . ID=CGI_10025409; scaffold1423 GLEAN mRNA 83900 85666 0.990927 + . ID=CGI_10025409; scaffold1423 TRF Tandem_Repeat 87098 87137 80 + . . scaffold1423 GLEAN mRNA 88334 92059 0.999999 - . ID=CGI_10025410; scaffold1423 GLEAN promoter 92060 93059 0.999999 - . ID=CGI_10025410; scaffold1423 TRF Tandem_Repeat 92798 92845 96 + . . scaffold1423 TRF Tandem_Repeat 95544 96000 905 + . . scaffold1423 GLEAN promoter 101456 102455 0.999985 + . ID=CGI_10025411; scaffold1423 GLEAN mRNA 102456 106192 0.999985 + . ID=CGI_10025411; scaffold1423 TRF Tandem_Repeat 108809 108864 112 + . . scaffold1423 GLEAN promoter 111508 112507 1 + . ID=CGI_10025412; scaffold1423 GLEAN mRNA 112508 114599 1 + . ID=CGI_10025412; scaffold1423 TRF Tandem_Repeat 114414 114463 66 + . . scaffold1423 GLEAN promoter 115026 116025 1 + . ID=CGI_10025413; scaffold1423 GLEAN mRNA 116026 122090 1 + . ID=CGI_10025413; scaffold1423 GLEAN promoter 121094 122093 1 + . ID=CGI_10025414; scaffold1423 GLEAN mRNA 122094 124681 1 + . ID=CGI_10025414; scaffold1423 TRF Tandem_Repeat 123253 123279 54 + . . scaffold1423 TRF Tandem_Repeat 125844 125870 54 + . . scaffold1423 WUBlastX LINE_R2-Hero 131122 131598 282 - . . scaffold1423 GLEAN promoter 134741 135740 0.642524 + . ID=CGI_10025415; scaffold1423 GLEAN mRNA 135741 136289 0.642524 + . ID=CGI_10025415; scaffold1423 GLEAN promoter 138943 139942 0.996496 + . ID=CGI_10025416; scaffold1423 GLEAN mRNA 139943 153580 0.996496 + . ID=CGI_10025416; scaffold1423 TRF Tandem_Repeat 143517 143560 88 + . . scaffold1423 TRF Tandem_Repeat 155186 155712 615 + . . scaffold1423 TRF Tandem_Repeat 160499 160648 246 + . . scaffold1423 TRF Tandem_Repeat 163455 163550 90 + . . scaffold1423 GLEAN promoter 163630 164629 1 + . ID=CGI_10025417; scaffold1423 GLEAN mRNA 164630 165586 1 + . ID=CGI_10025417; scaffold1423 TRF Tandem_Repeat 165828 165887 120 + . . scaffold1423 GLEAN mRNA 168220 177876 0.999415 - . ID=CGI_10025418; scaffold1423 TRF Tandem_Repeat 174385 174684 421 + . . scaffold1423 GLEAN promoter 177839 178838 0.893116 + . ID=CGI_10025419; scaffold1423 GLEAN promoter 177877 178876 0.999415 - . ID=CGI_10025418; scaffold1423 GLEAN mRNA 178839 185581 0.893116 + . ID=CGI_10025419; scaffold1423 GLEAN mRNA 180205 189553 0.814118 - . ID=CGI_10025420; scaffold1423 GLEAN promoter 189554 190553 0.814118 - . ID=CGI_10025420; scaffold1423 GLEAN mRNA 194970 198353 1 - . ID=CGI_10025421; scaffold1423 WUBlastX DNA_hAT 194973 195206 30 - . . scaffold1423 WUBlastX DNA_hAT 195744 195989 96 - . . scaffold1423 WUBlastX DNA_hAT 196199 197140 328 - . . scaffold1423 WUBlastX DNA_hAT 198099 198314 45 - . . scaffold1423 GLEAN promoter 198253 199252 1 + . ID=CGI_10025422; scaffold1423 GLEAN promoter 198354 199353 1 - . ID=CGI_10025421; scaffold1423 GLEAN mRNA 199253 203520 1 + . ID=CGI_10025422; scaffold1423 GLEAN mRNA 205383 207056 1 - . ID=CGI_10025423; scaffold1423 GLEAN promoter 207057 208056 1 - . ID=CGI_10025423; scaffold1423 GLEAN mRNA 207464 219341 0.999671 - . ID=CGI_10025424; scaffold1423 TRF Tandem_Repeat 212440 212530 62 + . . scaffold1423 TRF Tandem_Repeat 218351 218387 74 + . . scaffold1423 GLEAN promoter 219342 220341 0.999671 - . ID=CGI_10025424; scaffold1423 GLEAN promoter 225886 226885 0.987625 + . ID=CGI_10025425; scaffold1423 GLEAN mRNA 226886 228040 0.987625 + . ID=CGI_10025425; scaffold1423 WUBlastX LINE_RTE-X 229555 229911 42 - . . scaffold1423 WUBlastX LINE_RTE-X 229585 229869 100 - . . scaffold1423 WUBlastX LINE_RTE-X 229657 229881 122 - . . scaffold1423 WUBlastX LINE_RTE-X 230143 230199 22 - . . scaffold1423 WUBlastX DNA_TcMar-Marin 231754 232014 56 - . . scaffold1423 WUBlastX DNA_TcMar-Marin 231975 232172 43 - . . scaffold1423 WUBlastX DNA_TcMar-Marin 232163 232447 27 - . . scaffold1423 WUBlastX DNA_TcMar-Marin 232268 232390 46 - . . scaffold1423 WUBlastX DNA_TcMar-Marin 232271 232372 63 - . . scaffold1423 WUBlastX LINE_RTE-X 239929 240594 139 + . . scaffold1423 TRF Tandem_Repeat 269369 269732 440 + . . scaffold1423 TRF Tandem_Repeat 269427 269731 492 + . . scaffold1423 WUBlastX LTR_DIRS 269779 270024 67 + . . scaffold1423 WUBlastX LTR_DIRS 270189 270365 122 + . . scaffold1423 WUBlastX LTR_DIRS 270358 270636 209 + . . scaffold1423 WUBlastX LTR_DIRS 270639 270860 107 + . . scaffold1423 WUBlastX LTR_DIRS 270989 271141 43 + . . scaffold1423 WUBlastX LTR_DIRS 271141 271479 179 + . . scaffold1423 WUBlastX LTR_DIRS 271714 272136 261 + . . scaffold1423 WUBlastX LTR_DIRS 272165 272380 127 + . . scaffold1423 TRF Tandem_Repeat 274709 274760 104 + . . scaffold1423 TRF Tandem_Repeat 289693 290041 621 + . . scaffold1423 TRF Tandem_Repeat 294894 294922 58 + . . scaffold1423 TRF Tandem_Repeat 296011 296054 88 + . . scaffold1423 GLEAN promoter 296808 297807 0.72352 + . ID=CGI_10025426; scaffold1423 GLEAN mRNA 297808 305158 0.72352 + . ID=CGI_10025426; scaffold1423 TRF Tandem_Repeat 306181 306206 52 + . . scaffold1423 GLEAN mRNA 314960 332907 0.456701 - . ID=CGI_10025427; scaffold1423 TRF Tandem_Repeat 331194 331231 67 + . . scaffold1423 GLEAN promoter 332908 333907 0.456701 - . ID=CGI_10025427; scaffold1423 WUBlastX LINE_RTE-BovB 340571 340750 39 - . . scaffold1423 WUBlastX LINE_RTE-BovB 340629 341150 23 - . . scaffold1423 TRF Tandem_Repeat 340852 340881 51 + . . scaffold1423 WUBlastX LINE_RTE-BovB 340890 341198 35 - . . scaffold1423 TRF Tandem_Repeat 344587 344673 86 + . . scaffold1423 WUBlastX LINE_RTE-BovB 348030 348911 616 - . . scaffold1423 WUBlastX LINE_RTE-BovB 348907 349698 600 - . . scaffold1423 WUBlastX LINE_RTE-BovB 349225 349785 162 - . . scaffold1423 WUBlastX LINE_RTE-BovB 349707 349922 73 - . . scaffold1423 WUBlastX LINE_RTE-BovB 349838 350995 738 - . . scaffold1423 TRF Tandem_Repeat 361592 362565 1368 + . . scaffold1423 GLEAN mRNA 365596 414191 0.989152 - . ID=CGI_10025428; scaffold1423 TRF Tandem_Repeat 368697 369703 903 + . . scaffold1423 TRF Tandem_Repeat 368708 369703 811 + . . scaffold1423 TRF Tandem_Repeat 372610 372642 66 + . . scaffold1423 TRF Tandem_Repeat 377265 377829 1058 + . . scaffold1423 TRF Tandem_Repeat 378849 379101 260 + . . scaffold1423 TRF Tandem_Repeat 378860 379101 244 + . . scaffold1423 TRF Tandem_Repeat 387093 387253 69 + . . scaffold1423 TRF Tandem_Repeat 387093 387117 50 + . . scaffold1423 TRF Tandem_Repeat 387115 387249 52 + . . scaffold1423 GLEAN promoter 414192 415191 0.989152 - . ID=CGI_10025428; scaffold1423 GLEAN promoter 415806 416805 0.998391 + . ID=CGI_10025429; scaffold1423 GLEAN mRNA 416806 418431 0.998391 + . ID=CGI_10025429; scaffold1423 WUBlastX LTR_DIRS 422177 422749 60 + . . scaffold1423 WUBlastX LTR_DIRS 422295 422570 79 + . . scaffold1423 WUBlastX LTR_DIRS 422408 422749 98 + . . scaffold1423 WUBlastX LTR_DIRS 422543 422749 147 + . . scaffold1423 WUBlastX LTR_DIRS 423640 423849 81 + . . scaffold1423 WUBlastX LTR_DIRS 423676 423828 130 + . . scaffold1423 WUBlastX LTR_DIRS 423830 424264 181 + . . scaffold1423 WUBlastX LTR_DIRS 424159 424299 68 + . . scaffold1423 GLEAN mRNA 428972 432877 0.998573 - . ID=CGI_10025430; scaffold1423 GLEAN promoter 432878 433877 0.998573 - . ID=CGI_10025430; scaffold1423 TRF Tandem_Repeat 434324 434367 88 + . . scaffold1423 TRF Tandem_Repeat 444834 445018 280 + . . scaffold1423 TRF Tandem_Repeat 448789 448840 104 + . . scaffold1423 TRF Tandem_Repeat 449226 449270 90 + . . scaffold1423 TRF Tandem_Repeat 453902 453941 80 + . . scaffold1423 TRF Tandem_Repeat 456454 456491 76 + . . scaffold1423 TRF Tandem_Repeat 478995 479223 368 + . . scaffold1423 TRF Tandem_Repeat 479158 479329 90 + . . scaffold1423 TRF Tandem_Repeat 490536 490635 186 + . . scaffold1423 TRF Tandem_Repeat 495151 495203 106 + . . scaffold1423 TRF Tandem_Repeat 508169 508221 106 + . . scaffold1423 TRF Tandem_Repeat 525466 526097 1098 + . . scaffold1423 TRF Tandem_Repeat 526410 526556 204 + . . scaffold1423 TRF Tandem_Repeat 537926 538846 369 + . . scaffold1423 TRF Tandem_Repeat 557381 557459 149 + . . scaffold1423 GLEAN mRNA 567391 578605 0.999605 - . ID=CGI_10025431; scaffold1423 TRF Tandem_Repeat 575287 575345 118 + . . scaffold1423 GLEAN promoter 577376 578375 0.843729 + . ID=CGI_10025432; scaffold1423 GLEAN mRNA 578376 592213 0.843729 + . ID=CGI_10025432; scaffold1423 GLEAN promoter 578606 579605 0.999605 - . ID=CGI_10025431; scaffold1423 GLEAN mRNA 600709 641767 0.5483 - . ID=CGI_10025433; scaffold1423 TRF Tandem_Repeat 604266 604417 107 + . . scaffold1423 GLEAN promoter 641768 642767 0.5483 - . ID=CGI_10025433; scaffold1423 GLEAN promoter 641806 642805 0.999676 + . ID=CGI_10025434; scaffold1423 GLEAN mRNA 642806 646947 0.999676 + . ID=CGI_10025434; scaffold1423 TRF Tandem_Repeat 649773 649807 70 + . . scaffold1423 GLEAN mRNA 650683 651123 0.996819 - . ID=CGI_10025435; scaffold1423 GLEAN promoter 651124 652123 0.996819 - . ID=CGI_10025435; scaffold1423 GLEAN mRNA 653919 675880 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX DNA_Harbinger 672101 672412 129 + . . scaffold1423 WUBlastX DNA_Harbinger 672131 672466 116 + . . scaffold1423 WUBlastX DNA_Harbinger 672412 672507 54 + . . scaffold1423 WUBlastX DNA_Harbinger 672506 672619 73 + . . scaffold1423 WUBlastX DNA_Harbinger 672839 673024 99 + . . scaffold1423 WUBlastX DNA_Harbinger 672954 673139 63 + . . scaffold1423 WUBlastX DNA_Harbinger 672954 673109 78 + . . scaffold1423 WUBlastX DNA_Harbinger 674007 674138 39 - . . scaffold1423 GLEAN promoter 675881 676880 0.821976 - . ID=CGI_10025436; scaffold1423 WUBlastX LTR_Ngaro 689764 689835 37 + . . scaffold1423 WUBlastX LTR_Ngaro 690332 690478 51 + . . scaffold1423 WUBlastX LTR_Ngaro 690603 690860 65 + . . scaffold1423 WUBlastX LTR_Ngaro 690705 690935 54 + . . scaffold1423 WUBlastX LTR_Ngaro 690925 691167 84 + . . scaffold1423 WUBlastX LINE_L1 692048 692527 21 - . . scaffold1423 WUBlastX LINE_L1-Tx1 692186 692530 112 - . . scaffold1423 WUBlastX LINE_L1-Tx1 692569 692799 33 - . . scaffold1423 WUBlastX LINE_L1-Tx1 692823 693209 40 - . . scaffold1423 WUBlastX LINE_L1-Tx1 692994 693200 68 - . . scaffold1423 WUBlastX LINE_L1-Tx1 693134 694561 201 - . . scaffold1423 WUBlastX LINE_L1 694385 694612 29 - . . scaffold1423 GLEAN mRNA 698275 698505 0.992406 - . ID=CGI_10025437; scaffold1423 GLEAN promoter 698506 699505 0.992406 - . ID=CGI_10025437; scaffold1423 TRF Tandem_Repeat 698957 698993 74 + . . scaffold1423 WUBlastX LINE_L1-Tx1 699076 699267 21 + . . scaffold1423 WUBlastX LINE_L1-Tx1 699115 699270 53 + . . scaffold1423 WUBlastX LINE_L1 699815 700726 42 + . . scaffold1423 WUBlastX LINE_L1-Tx1 699821 700237 132 + . . scaffold1423 WUBlastX LINE_L1 700643 700768 56 + . . scaffold1423 WUBlastX LINE_L1-Tx1 700643 700729 76 + . . scaffold1423 WUBlastX LINE_L1-Tx1 701014 701415 82 + . . scaffold1423 GLEAN mRNA 702823 732700 0.440207 - . ID=CGI_10025438; scaffold1423 WUBlastX LINE_Jockey 713796 714317 64 + . . scaffold1423 WUBlastX LINE_RTE-BovB 713898 714326 187 + . . scaffold1423 WUBlastX LINE_RTE-X 714036 714395 35 + . . scaffold1423 WUBlastX LINE_RTE-BovB 714322 714444 33 + . . scaffold1423 WUBlastX LINE_RTE-BovB 714696 715832 418 + . . scaffold1423 TRF Tandem_Repeat 721545 721574 60 + . . scaffold1423 WUBlastX LTR_Ngaro 726073 727014 220 - . . scaffold1423 WUBlastX LTR_Ngaro 726990 728552 946 - . . scaffold1423 WUBlastX LTR_Ngaro 728530 728958 95 - . . scaffold1423 TRF Tandem_Repeat 729399 730574 1647 + . . scaffold1423 WUBlastX LTR_Ngaro 732071 732259 58 - . . scaffold1423 GLEAN promoter 732701 733700 0.440207 - . ID=CGI_10025438; scaffold1423 GLEAN mRNA 735890 736295 1 - . ID=CGI_10025439; scaffold1423 GLEAN promoter 736296 737295 1 - . ID=CGI_10025439; scaffold1423 WUBlastX LTR_Ngaro 749416 750267 297 - . . scaffold1423 WUBlastX LTR_DIRS 750283 751080 47 - . . scaffold1423 WUBlastX LTR_Ngaro 750409 751074 371 - . . scaffold1423 TRF Tandem_Repeat 751123 751172 66 + . . scaffold1423 WUBlastX LTR_Ngaro 754235 754729 347 - . . scaffold1423 WUBlastX LTR_Ngaro 754732 755070 172 - . . scaffold1423 WUBlastX LTR_Ngaro 755311 756057 182 - . . scaffold1423 TRF Tandem_Repeat 756768 756802 52 + . . scaffold1423 TRF Tandem_Repeat 756812 757503 1079 + . . scaffold1423 GLEAN promoter 827062 828061 0.602549 + . ID=CGI_10025440; scaffold1423 GLEAN mRNA 828062 836562 0.602549 + . ID=CGI_10025440; scaffold1423 TRF Tandem_Repeat 833155 833182 56 + . . scaffold1423 TRF Tandem_Repeat 834872 834973 66 + . . scaffold1423 WUBlastX LINE_CR1-L2 837100 837402 50 + . . scaffold1423 TRF Tandem_Repeat 843497 843540 88 + . . scaffold1423 GLEAN promoter 850157 851156 0.409903 + . ID=CGI_10025441; scaffold1423 TRF Tandem_Repeat 850731 850845 65 + . . scaffold1423 GLEAN mRNA 851157 872284 0.409903 + . ID=CGI_10025441; scaffold1423 TRF Tandem_Repeat 867572 867634 65 + . . scaffold1423 TRF Tandem_Repeat 867572 867622 68 + . . scaffold1423 TRF Tandem_Repeat 869121 869341 327 + . . scaffold1423 TRF Tandem_Repeat 870015 870206 287 + . . scaffold1423 GLEAN mRNA 875719 893618 1 - . ID=CGI_10025442; scaffold1423 TRF Tandem_Repeat 876959 877010 90 + . . scaffold1423 TRF Tandem_Repeat 891299 891615 272 + . . scaffold1423 GLEAN promoter 893619 894618 1 - . ID=CGI_10025442; scaffold1423 TRF Tandem_Repeat 894302 894354 106 + . . scaffold1423 GLEAN mRNA 898436 920689 0.999351 - . ID=CGI_10025443; scaffold1423 TRF Tandem_Repeat 900226 900302 140 + . . scaffold1423 TRF Tandem_Repeat 908392 908733 265 + . . scaffold1423 TRF Tandem_Repeat 912420 913398 745 + . . scaffold1423 TRF Tandem_Repeat 912425 912990 733 + . . scaffold1423 TRF Tandem_Repeat 913081 913264 83 + . . scaffold1423 TRF Tandem_Repeat 913289 913398 69 + . . scaffold1423 GLEAN promoter 920690 921689 0.999351 - . ID=CGI_10025443; scaffold1423 TRF Tandem_Repeat 922133 922233 202 + . . scaffold1423 TRF Tandem_Repeat 923223 923281 118 + . . scaffold1423 GLEAN promoter 924796 925795 0.999949 + . ID=CGI_10025444; scaffold1423 GLEAN mRNA 925796 936278 0.999949 + . ID=CGI_10025444; scaffold1423 TRF Tandem_Repeat 926581 926624 63 + . . scaffold1423 TRF Tandem_Repeat 929515 929559 63 + . . scaffold1423 TRF Tandem_Repeat 934867 935317 672 + . . scaffold1423 TRF Tandem_Repeat 937730 938363 878 + . . scaffold1423 TRF Tandem_Repeat 939601 941133 1244 + . . scaffold1423 TRF Tandem_Repeat 939601 941009 1033 + . . scaffold1423 GLEAN promoter 949473 950472 0.992668 + . ID=CGI_10025445; scaffold1423 GLEAN mRNA 950473 951722 0.992668 + . ID=CGI_10025445; scaffold1423 TRF Tandem_Repeat 950659 950890 353 + . . scaffold1423 TRF Tandem_Repeat 950659 950929 184 + . . scaffold1423 TRF Tandem_Repeat 953708 953839 103 + . . scaffold1423 TRF Tandem_Repeat 955384 955595 133 + . . scaffold1423 GLEAN promoter 956520 957519 0.992668 + . ID=CGI_10025446; scaffold1423 GLEAN mRNA 957520 958366 0.992668 + . ID=CGI_10025446; scaffold1423 TRF Tandem_Repeat 958306 958616 173 + . . scaffold1423 TRF Tandem_Repeat 958890 960209 808 + . . scaffold1423 TRF Tandem_Repeat 958890 960340 1006 + . . scaffold1423 GLEAN mRNA 962018 971121 0.733568 - . ID=CGI_10025447; scaffold1423 TRF Tandem_Repeat 968624 968857 432 + . . scaffold1423 TRF Tandem_Repeat 969140 969469 624 + . . scaffold1423 GLEAN promoter 971122 972121 0.733568 - . ID=CGI_10025447; scaffold1423 TRF Tandem_Repeat 972743 972902 205 + . . scaffold1423 TRF Tandem_Repeat 974373 974492 116 + . . scaffold1423 TRF Tandem_Repeat 977397 977750 528 + . . scaffold1423 TRF Tandem_Repeat 977915 977955 73 + . . scaffold1423 WUBlastX LINE_L1-Tx1 977977 978225 27 - . . scaffold1423 WUBlastX LINE_L1 978230 978364 20 - . . scaffold1423 WUBlastX LINE_L1-Tx1 978260 978361 21 - . . scaffold1423 WUBlastX LINE_L1-Tx1 978278 979918 287 - . . scaffold1423 WUBlastX LINE_L1 979507 980130 110 - . . scaffold1423 WUBlastX LINE_L1-Tx1 979507 980022 171 - . . scaffold1423 TRF Tandem_Repeat 999682 999904 374 + . . scaffold1423 GLEAN mRNA 1002097 1003347 0.987309 - . ID=CGI_10025448; scaffold1423 TRF Tandem_Repeat 1002351 1002565 331 + . . scaffold1423 GLEAN promoter 1003348 1004347 0.987309 - . ID=CGI_10025448; scaffold1423 GLEAN promoter 1005289 1006288 0.798305 + . ID=CGI_10025449; scaffold1423 GLEAN mRNA 1006289 1022634 0.798305 + . ID=CGI_10025449; scaffold1423 TRF Tandem_Repeat 1010237 1010434 292 + . . scaffold1423 TRF Tandem_Repeat 1016718 1018661 2991 + . . scaffold1423 TRF Tandem_Repeat 1020838 1021990 1285 + . . scaffold1423 GLEAN mRNA 1030288 1037483 0.646228 - . ID=CGI_10025450; scaffold1423 GLEAN promoter 1037484 1038483 0.646228 - . ID=CGI_10025450; scaffold1423 WUBlastX LTR_Gypsy 1038708 1039520 106 + . . scaffold1423 WUBlastX LTR_Gypsy-Cigr 1038711 1039217 127 + . . scaffold1423 WUBlastX LTR_Gypsy 1039371 1040774 254 + . . scaffold1423 WUBlastX LTR_Gypsy 1039788 1040774 268 + . . scaffold1423 WUBlastX LTR_Gypsy 1040022 1040774 363 + . . scaffold1423 WUBlastX LTR_Gypsy-Cigr 1040166 1040771 571 + . . scaffold1423 WUBlastX LTR_Gypsy-Cigr 1040166 1040900 564 + . . scaffold1423 WUBlastX LTR_Gypsy 1040166 1041062 415 + . . scaffold1423 WUBlastX LTR_Gypsy-Cigr 1041085 1041990 619 + . . scaffold1423 GLEAN promoter 1041867 1042866 0.988726 + . ID=CGI_10025452; scaffold1423 WUBlastX LTR_Gypsy-Cigr 1041986 1042408 165 + . . scaffold1423 WUBlastX LTR_Copia 1042356 1042601 60 + . . scaffold1423 WUBlastX LTR_Gypsy 1042715 1042828 27 + . . scaffold1423 GLEAN mRNA 1042867 1043394 0.988726 + . ID=CGI_10025452; scaffold1423 TRF Tandem_Repeat 1045152 1045515 521 + . . scaffold1423 TRF Tandem_Repeat 1045621 1045760 253 + . . scaffold1423 TRF Tandem_Repeat 1046871 1046898 56 + . . scaffold1423 WUBlastX LINE_L1-Tx1 1049786 1050775 40 + . . scaffold1423 WUBlastX LINE_L1-Tx1 1050014 1050928 319 + . . scaffold1423 WUBlastX LINE_L1-Tx1 1050924 1051721 33 + . . scaffold1423 WUBlastX LINE_L1-Tx1 1051101 1051712 39 + . . scaffold1423 TRF Tandem_Repeat 1054680 1054744 58 + . . scaffold1423 GLEAN promoter 1056538 1057537 0.980388 + . ID=CGI_10025454; scaffold1423 GLEAN mRNA 1057538 1060967 0.980388 + . ID=CGI_10025454; scaffold1423 WUBlastX LTR_Ngaro 1058089 1058757 143 + . . scaffold1423 WUBlastX LTR_Ngaro 1058814 1060424 784 + . . scaffold1423 WUBlastX LTR_Ngaro 1059099 1060418 935 + . . scaffold1423 WUBlastX LTR_Ngaro 1060442 1060786 66 + . . scaffold1423 WUBlastX LTR_Ngaro 1060969 1061370 144 + . . scaffold1423 TRF Tandem_Repeat 1061555 1061705 159 + . . scaffold1423 WUBlastX LTR_Pao 1064831 1069330 1105 + . . scaffold1423 WUBlastX LTR_Pao 1065701 1070743 3622 + . . scaffold1424 TRF Tandem_Repeat 2644 2688 90 + . . scaffold1424 TRF Tandem_Repeat 3859 3890 64 + . . scaffold1424 TRF Tandem_Repeat 4142 4194 97 + . . scaffold1424 WUBlastX LTR_ERV1 5373 6152 161 + . . scaffold1424 WUBlastX LTR_Gypsy 5496 7658 1418 + . . scaffold1424 WUBlastX LTR_Copia 7615 7731 29 + . . scaffold1424 WUBlastX LTR_Gypsy 10756 10827 25 + . . scaffold1424 WUBlastX LTR_Gypsy 11012 11521 463 + . . scaffold1424 WUBlastX LTR_Gypsy 11875 11940 22 + . . scaffold1424 TRF Tandem_Repeat 12156 12200 90 + . . scaffold1424 TRF Tandem_Repeat 13776 13919 191 + . . scaffold1424 TRF Tandem_Repeat 13786 13935 95 + . . scaffold1424 GLEAN promoter 19271 20270 0.999372 + . ID=CGI_10005348; scaffold1424 GLEAN mRNA 20271 20495 0.999372 + . ID=CGI_10005348; scaffold1424 WUBlastX LTR_Gypsy 20646 21155 93 + . . scaffold1424 WUBlastX LTR_ERV1 21301 21492 26 + . . scaffold1424 WUBlastX LTR_Gypsy 22977 24476 778 + . . scaffold1424 WUBlastX LTR_Gypsy 23205 24500 874 + . . scaffold1424 WUBlastX LTR_Gypsy 24499 25701 277 + . . scaffold1424 WUBlastX LTR_Gypsy 24913 25701 410 + . . scaffold1424 WUBlastX LTR_Gypsy 25105 25890 124 + . . scaffold1424 WUBlastX LTR_Copia 25954 26082 37 + . . scaffold1424 WUBlastX LTR_Gypsy 26693 26803 20 + . . scaffold1424 WUBlastX LTR_Gypsy 27691 27729 21 + . . scaffold1424 WUBlastX LTR_Gypsy 28415 28537 23 + . . scaffold1424 WUBlastX LTR_Gypsy 28436 28672 51 + . . scaffold1424 WUBlastX LTR_Gypsy 28891 29961 377 + . . scaffold1424 WUBlastX LTR_Gypsy 29188 30207 479 + . . scaffold1424 WUBlastX LTR_Gypsy 30210 30497 162 + . . scaffold1424 WUBlastX LTR_Gypsy 30240 31166 72 + . . scaffold1424 WUBlastX LTR_Gypsy 30759 31160 121 + . . scaffold1424 WUBlastX LTR_Gypsy 30873 31055 126 + . . scaffold1424 WUBlastX LTR_Gypsy 31166 31837 75 + . . scaffold1424 WUBlastX LTR_Gypsy 31166 31609 230 + . . scaffold1424 WUBlastX LTR_Gypsy 31181 31726 198 + . . scaffold1424 TRF Tandem_Repeat 31912 32812 583 + . . scaffold1424 TRF Tandem_Repeat 31981 32790 469 + . . scaffold1424 GLEAN promoter 32463 33462 0.311764 + . ID=CGI_10005349; scaffold1424 GLEAN mRNA 33463 38788 0.311764 + . ID=CGI_10005349; scaffold1424 WUBlastX DNA_Harbinger 38935 39195 88 - . . scaffold1424 WUBlastX DNA_Harbinger 39484 39597 63 - . . scaffold1424 WUBlastX DNA_Harbinger 39727 39870 64 - . . scaffold1424 WUBlastX DNA_Harbinger 39733 39849 70 - . . scaffold1424 WUBlastX DNA_Harbinger 39754 39849 73 - . . scaffold1424 WUBlastX DNA_Harbinger 39891 40109 65 - . . scaffold1424 WUBlastX DNA_Harbinger 39963 40115 87 - . . scaffold1424 WUBlastX DNA_Harbinger 39996 40109 116 - . . scaffold1424 WUBlastX DNA_Harbinger 40724 41056 35 - . . scaffold1424 WUBlastX DNA_Harbinger 40775 41059 107 - . . scaffold1424 WUBlastX DNA_Harbinger 40790 41191 62 - . . scaffold1424 TRF Tandem_Repeat 46386 46430 90 + . . scaffold1424 TRF Tandem_Repeat 47309 47336 56 + . . scaffold1424 WUBlastX LINE_CR1 52869 53639 196 + . . scaffold1424 GLEAN promoter 52871 53870 0.99939 + . ID=CGI_10005350; scaffold1424 WUBlastX LINE_I 53217 54119 22 + . . scaffold1424 WUBlastX LINE_L1 53466 53795 28 + . . scaffold1424 GLEAN mRNA 53871 54215 0.99939 + . ID=CGI_10005350; scaffold1424 WUBlastX LINE_R1 53883 53963 23 + . . scaffold1424 WUBlastX LINE_L1-Tx1 54339 57929 1131 + . . scaffold1424 WUBlastX DNA_Kolobok 66109 66399 117 + . . scaffold1424 WUBlastX DNA_Kolobok 66474 66656 88 + . . scaffold1424 WUBlastX DNA_Kolobok 66632 66739 30 + . . scaffold1424 WUBlastX DNA_Kolobok 67447 67590 30 + . . scaffold1424 WUBlastX DNA_Kolobok 67456 67671 24 + . . scaffold1424 WUBlastX DNA_Kolobok 67456 67623 28 + . . scaffold1424 WUBlastX DNA_Kolobok 67747 67926 52 + . . scaffold1424 WUBlastX LINE_L2 68903 69574 37 + . . scaffold1424 WUBlastX LINE_L2 69056 69592 68 + . . scaffold1424 WUBlastX LINE_L2 69149 69637 105 + . . scaffold1424 WUBlastX LINE_L1-Tx1 69804 70286 45 + . . scaffold1424 WUBlastX LINE_L1-Tx1 69879 70274 219 + . . scaffold1424 WUBlastX LINE_L1-Tx1 70280 70609 77 + . . scaffold1424 WUBlastX LINE_L1-Tx1 70429 71607 656 + . . scaffold1424 WUBlastX LINE_L1-Tx1 71552 71905 228 + . . scaffold1424 WUBlastX LINE_L1-Tx1 71922 73622 340 + . . scaffold1424 WUBlastX LTR_Gypsy 80553 80747 27 + . . scaffold1424 WUBlastX LTR_Gypsy-Cigr 80878 80952 25 + . . scaffold1424 WUBlastX LTR_Gypsy-Cigr 81332 81406 23 + . . scaffold1424 WUBlastX LTR_Gypsy-Cigr 81891 81998 46 + . . scaffold1424 WUBlastX LTR_Gypsy-Cigr 86173 86268 81 + . . scaffold1424 WUBlastX LINE_RTE-X 112052 113350 862 + . . scaffold1424 WUBlastX LINE_RTE-X 113341 113988 420 + . . scaffold1424 WUBlastX LINE_RTE-X 113416 114117 43 + . . scaffold1424 TRF Tandem_Repeat 117902 117947 58 + . . scaffold1424 GLEAN mRNA 122366 123622 1 - . ID=CGI_10005352; scaffold1424 GLEAN promoter 123623 124622 1 - . ID=CGI_10005352; scaffold1424 TRF Tandem_Repeat 123975 124016 84 + . . scaffold1425 GLEAN mRNA 10110 28245 0.999635 - . ID=CGI_10001937; scaffold1425 GLEAN promoter 28246 29245 0.999635 - . ID=CGI_10001937; scaffold1425 GLEAN mRNA 29335 34266 0.999998 - . ID=CGI_10001938; scaffold1425 GLEAN promoter 34267 35196 0.999998 - . ID=CGI_10001938; scaffold1426 GLEAN mRNA 73 378 0.999996 - . ID=CGI_10003024; scaffold1426 GLEAN promoter 379 1378 0.999996 - . ID=CGI_10003024; scaffold1426 GLEAN mRNA 415 27976 0.990953 - . ID=CGI_10003025; scaffold1426 TRF Tandem_Repeat 1772 1819 96 + . . scaffold1426 WUBlastX DNA_hAT-Tip100 5871 6380 61 + . . scaffold1426 WUBlastX DNA_hAT-Tip100 6015 6419 96 + . . scaffold1426 WUBlastX DNA_hAT-Tip100 6611 6880 131 + . . scaffold1426 WUBlastX DNA_hAT-Charlie 6647 6973 86 + . . scaffold1426 WUBlastX DNA_hAT-Tip100 6880 7038 63 + . . scaffold1426 WUBlastX DNA_hAT-Tip100 7133 7483 44 + . . scaffold1426 GLEAN promoter 27977 28976 0.990953 - . ID=CGI_10003025; scaffold1426 GLEAN mRNA 38224 56130 0.825228 - . ID=CGI_10003026; scaffold1426 TRF Tandem_Repeat 44453 45230 1015 + . . scaffold1426 GLEAN promoter 56131 57130 0.825228 - . ID=CGI_10003026; scaffold1426 TRF Tandem_Repeat 56658 56844 374 + . . scaffold1427 GLEAN promoter 1 3 0.901139 + . ID=CGI_10005223; scaffold1427 GLEAN mRNA 4 11150 0.901139 + . ID=CGI_10005223; scaffold1427 TRF Tandem_Repeat 7756 7937 301 + . . scaffold1427 TRF Tandem_Repeat 7944 8210 256 + . . scaffold1427 GLEAN mRNA 8598 10883 0.997215 - . ID=CGI_10005224; scaffold1427 TRF Tandem_Repeat 9136 9378 235 + . . scaffold1427 GLEAN promoter 10473 11472 0.901462 + . ID=CGI_10005225; scaffold1427 GLEAN promoter 10884 11883 0.997215 - . ID=CGI_10005224; scaffold1427 GLEAN mRNA 11473 12653 0.901462 + . ID=CGI_10005225; scaffold1427 GLEAN mRNA 13450 16593 0.9972 - . ID=CGI_10005226; scaffold1427 GLEAN promoter 16594 17593 0.9972 - . ID=CGI_10005226; scaffold1427 WUBlastX DNA_TcMar-Marin 37082 37303 55 - . . scaffold1427 GLEAN promoter 40430 41429 0.956761 + . ID=CGI_10005227; scaffold1427 GLEAN mRNA 41430 44967 0.956761 + . ID=CGI_10005227; scaffold1427 GLEAN mRNA 53677 60534 0.584287 - . ID=CGI_10005228; scaffold1427 GLEAN promoter 60535 61534 0.584287 - . ID=CGI_10005228; scaffold1427 GLEAN promoter 64602 65601 0.999124 + . ID=CGI_10005229; scaffold1427 GLEAN mRNA 65602 66000 0.999124 + . ID=CGI_10005229; scaffold1427 WUBlastX DNA_Maverick 66313 66411 51 + . . scaffold1427 WUBlastX DNA_Maverick 66328 66417 67 + . . scaffold1427 WUBlastX DNA_Maverick 66420 66818 182 + . . scaffold1427 WUBlastX DNA_Maverick 66811 67440 242 + . . scaffold1427 WUBlastX DNA_Maverick 66913 67428 250 + . . scaffold1427 TRF Tandem_Repeat 70501 70611 100 + . . scaffold1427 TRF Tandem_Repeat 73667 73691 50 + . . scaffold1427 WUBlastX DNA_Maverick 81251 81409 56 - . . scaffold1427 WUBlastX DNA_Maverick 81275 81409 86 - . . scaffold1427 WUBlastX DNA_Maverick 81415 81759 101 - . . scaffold1427 GLEAN promoter 82286 83285 0.375742 + . ID=CGI_10005230; scaffold1427 GLEAN mRNA 83286 88793 0.375742 + . ID=CGI_10005230; scaffold1427 WUBlastX LTR_Gypsy 84946 84978 21 + . . scaffold1427 WUBlastX LTR_Gypsy 84956 85282 96 + . . scaffold1427 WUBlastX LTR_Gypsy 85070 86203 339 + . . scaffold1427 WUBlastX LTR_Gypsy 85724 86299 80 + . . scaffold1427 GLEAN mRNA 90213 91227 0.29313 - . ID=CGI_10005231; scaffold1427 GLEAN promoter 91228 92227 0.29313 - . ID=CGI_10005231; scaffold1427 GLEAN promoter 99689 100688 0.382647 + . ID=CGI_10005232; scaffold1427 GLEAN mRNA 100689 106671 0.382647 + . ID=CGI_10005232; scaffold1427 WUBlastX DNA_Harbinger 104753 105265 192 - . . scaffold1427 WUBlastX DNA_Harbinger 104834 105268 215 - . . scaffold1427 WUBlastX DNA_Harbinger 105231 105575 58 - . . scaffold1427 WUBlastX DNA_Harbinger 105351 105629 87 - . . scaffold1427 WUBlastX DNA_Harbinger 105745 106023 36 - . . scaffold1427 WUBlastX DNA_Harbinger 105790 106092 41 - . . scaffold1427 TRF Tandem_Repeat 110868 111493 601 + . . scaffold1427 GLEAN promoter 110869 111868 1 + . ID=CGI_10005233; scaffold1427 GLEAN mRNA 111869 112927 1 + . ID=CGI_10005233; scaffold1427 WUBlastX DNA_En-Spm 114267 114683 131 - . . scaffold1427 WUBlastX DNA_TcMar-Tc1 114799 115695 348 - . . scaffold1427 WUBlastX DNA_TcMar-Tc1 115629 115769 22 - . . scaffold1427 WUBlastX DNA_En-Spm 115915 116307 57 - . . scaffold1427 WUBlastX DNA_En-Spm 116011 116217 61 - . . scaffold1427 WUBlastX DNA_En-Spm 118065 118556 49 - . . scaffold1427 TRF Tandem_Repeat 118629 118679 57 + . . scaffold1427 TRF Tandem_Repeat 118630 118672 59 + . . scaffold1427 GLEAN promoter 119335 120334 0.981858 + . ID=CGI_10005234; scaffold1427 GLEAN mRNA 120335 121417 0.981858 + . ID=CGI_10005234; scaffold1428 TRF Tandem_Repeat 1991 2028 76 + . . scaffold1428 TRF Tandem_Repeat 2275 2311 74 + . . scaffold1428 TRF Tandem_Repeat 9497 9551 110 + . . scaffold1428 WUBlastX DNA_Sola 10158 11609 432 - . . scaffold1428 WUBlastX DNA_Sola 10731 11612 442 - . . scaffold1428 WUBlastX DNA_Sola 12757 12984 48 - . . scaffold1428 WUBlastX DNA_Sola 13751 14602 320 - . . scaffold1428 GLEAN promoter 16888 17887 0.648527 + . ID=CGI_10001542; scaffold1428 GLEAN mRNA 17888 24384 0.648527 + . ID=CGI_10001542; scaffold1428 TRF Tandem_Repeat 23510 23943 139 + . . scaffold1429 GLEAN mRNA 1197 12757 0.989698 - . ID=CGI_10001354; scaffold1429 TRF Tandem_Repeat 3714 3752 51 + . . scaffold1429 GLEAN promoter 12458 13457 0.727726 + . ID=CGI_10001355; scaffold1429 GLEAN promoter 12758 13757 0.989698 - . ID=CGI_10001354; scaffold1429 GLEAN mRNA 13458 17611 0.727726 + . ID=CGI_10001355; scaffold1429 WUBlastX DNA_IS4EU 14565 15194 234 - . . scaffold1429 WUBlastX DNA_Kolobok-IS4 15455 15862 27 + . . scaffold1429 WUBlastX DNA_IS4EU 15775 16470 329 + . . scaffold1429 WUBlastX DNA_IS4EU 17269 17514 57 - . . scaffold143 WUBlastX LINE_L1 1992 2267 21 - . . scaffold143 TRF Tandem_Repeat 2762 4512 2297 + . . scaffold143 TRF Tandem_Repeat 2762 4512 2411 + . . scaffold143 TRF Tandem_Repeat 4682 4732 66 + . . scaffold143 TRF Tandem_Repeat 5048 5103 76 + . . scaffold143 TRF Tandem_Repeat 5049 5091 50 + . . scaffold143 TRF Tandem_Repeat 5057 5104 60 + . . scaffold143 TRF Tandem_Repeat 5582 5632 102 + . . scaffold143 GLEAN promoter 6031 7030 1 + . ID=CGI_10010005; scaffold143 GLEAN mRNA 7031 9564 1 + . ID=CGI_10010005; scaffold143 GLEAN promoter 15958 16957 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Ngaro 16065 16325 46 + . . scaffold143 GLEAN mRNA 16958 23785 0.985197 + . ID=CGI_10010006; scaffold143 WUBlastX LTR_Gypsy 19430 19747 63 - . . scaffold143 WUBlastX LTR_Gypsy 19610 19759 66 - . . scaffold143 WUBlastX LTR_Gypsy 19644 20459 147 - . . scaffold143 WUBlastX LTR_Gypsy 19806 20975 1055 - . . scaffold143 WUBlastX LTR_Gypsy 20900 22741 1581 - . . scaffold143 GLEAN promoter 38157 39156 0.728522 + . ID=CGI_10010007; scaffold143 GLEAN mRNA 39157 75752 0.728522 + . ID=CGI_10010007; scaffold143 WUBlastX LTR_Gypsy 39863 39982 20 - . . scaffold143 WUBlastX LTR_Gypsy 39882 40259 27 - . . scaffold143 WUBlastX LTR_Gypsy 39951 40265 44 - . . scaffold143 WUBlastX LTR_Gypsy 40035 40277 181 - . . scaffold143 WUBlastX LTR_Gypsy 40226 41227 975 - . . scaffold143 WUBlastX LTR_Gypsy 41239 42708 1406 - . . scaffold143 WUBlastX LTR_Gypsy 42735 42983 37 - . . scaffold143 WUBlastX LTR_Gypsy 42860 43432 262 - . . scaffold143 WUBlastX LTR_Gypsy 42980 43483 480 - . . scaffold143 TRF Tandem_Repeat 46216 46279 121 + . . scaffold143 TRF Tandem_Repeat 57442 57493 97 + . . scaffold143 TRF Tandem_Repeat 59195 59353 196 + . . scaffold143 TRF Tandem_Repeat 65790 65959 208 + . . scaffold143 TRF Tandem_Repeat 65790 65961 215 + . . scaffold143 TRF Tandem_Repeat 65791 65961 195 + . . scaffold143 TRF Tandem_Repeat 66788 66870 139 + . . scaffold143 TRF Tandem_Repeat 68649 68713 130 + . . scaffold143 WUBlastX LTR_Gypsy 73259 75634 2051 + . . scaffold143 WUBlastX LTR_Gypsy-Gmr1 76263 76337 23 - . . scaffold143 WUBlastX LTR_Gypsy-Cigr 76301 76999 545 - . . scaffold143 WUBlastX LTR_Gypsy-Cigr 76900 77676 479 - . . scaffold143 WUBlastX LTR_Gypsy-Cigr 77014 77814 448 - . . scaffold143 WUBlastX LTR_Gypsy 78268 78318 21 - . . scaffold143 WUBlastX LTR_Gypsy 78616 79113 45 - . . scaffold143 WUBlastX LTR_Gypsy-Cigr 78724 79248 63 - . . scaffold143 WUBlastX LTR_Gypsy 78853 79143 65 - . . scaffold143 WUBlastX LTR_Lenti 79491 79730 47 - . . scaffold143 WUBlastX LTR_Gypsy 79641 79760 32 - . . scaffold143 GLEAN mRNA 79775 80164 0.986676 - . ID=CGI_10010008; scaffold143 WUBlastX LTR_Gypsy 79955 80392 53 - . . scaffold143 GLEAN promoter 80165 81164 0.986676 - . ID=CGI_10010008; scaffold143 GLEAN mRNA 80214 80516 0.776794 - . ID=CGI_10010009; scaffold143 WUBlastX LTR_Gypsy 80244 80543 54 - . . scaffold143 GLEAN promoter 80517 81516 0.776794 - . ID=CGI_10010009; scaffold143 TRF Tandem_Repeat 83919 83949 55 + . . scaffold143 GLEAN promoter 85467 86466 0.999999 + . ID=CGI_10010010; scaffold143 TRF Tandem_Repeat 85950 86043 89 + . . scaffold143 GLEAN mRNA 86467 95124 0.999999 + . ID=CGI_10010010; scaffold143 GLEAN mRNA 109786 128853 0.354657 - . ID=CGI_10010011; scaffold143 GLEAN promoter 116664 117663 0.999949 + . ID=CGI_10010012; scaffold143 GLEAN mRNA 117664 149411 0.999949 + . ID=CGI_10010012; scaffold143 TRF Tandem_Repeat 117839 118172 551 + . . scaffold143 TRF Tandem_Repeat 120708 121016 501 + . . scaffold143 GLEAN promoter 128854 129853 0.354657 - . ID=CGI_10010011; scaffold143 WUBlastX LINE_RTE-X 147194 147349 25 - . . scaffold143 WUBlastX LINE_RTE-X 147254 147361 41 - . . scaffold143 WUBlastX LINE_RTE-X 147363 147521 22 - . . scaffold143 GLEAN promoter 148729 149728 1 + . ID=CGI_10010013; scaffold143 GLEAN mRNA 149729 152281 1 + . ID=CGI_10010013; scaffold143 GLEAN mRNA 153450 168728 0.999598 - . ID=CGI_10010014; scaffold143 TRF Tandem_Repeat 154990 155056 80 + . . scaffold143 TRF Tandem_Repeat 154998 155056 73 + . . scaffold143 TRF Tandem_Repeat 155309 156631 1608 + . . scaffold143 TRF Tandem_Repeat 158355 158410 60 + . . scaffold143 TRF Tandem_Repeat 158683 158717 70 + . . scaffold143 GLEAN promoter 168729 169728 0.999598 - . ID=CGI_10010014; scaffold143 TRF Tandem_Repeat 169610 170011 547 + . . scaffold143 GLEAN mRNA 169963 195466 0.789583 - . ID=CGI_10010015; scaffold143 TRF Tandem_Repeat 175577 175970 636 + . . scaffold143 WUBlastX LINE_L1 181851 181916 21 - . . scaffold143 WUBlastX LINE_L1-Tx1 182843 185035 872 - . . scaffold143 WUBlastX LINE_Tad1? 184613 185119 68 - . . scaffold143 WUBlastX LINE_RTE-BovB 186017 186073 20 - . . scaffold143 TRF Tandem_Repeat 186642 186685 88 + . . scaffold143 WUBlastX LINE_L1-Tx1 186818 187315 90 - . . scaffold143 WUBlastX LINE_L1-Tx1 186896 187309 105 - . . scaffold143 WUBlastX LINE_L1-Tx1 186962 187366 106 - . . scaffold143 WUBlastX LINE_L1 187964 188143 89 - . . scaffold143 TRF Tandem_Repeat 189670 189719 100 + . . scaffold143 WUBlastX LINE_L1 190207 190596 57 - . . scaffold143 WUBlastX LINE_L1-Tx1 190279 190581 162 - . . scaffold143 WUBlastX LINE_L1 192032 192910 36 - . . scaffold143 WUBlastX LINE_L1 192071 192775 139 - . . scaffold143 WUBlastX LINE_L1-Tx1 193069 193398 102 - . . scaffold143 WUBlastX LINE_L1-Tx1 193162 193410 154 - . . scaffold143 WUBlastX LINE_L1-Tx1 193769 194134 279 - . . scaffold143 WUBlastX LINE_L2 194480 195148 117 - . . scaffold143 WUBlastX LINE_L2 194591 195247 27 - . . scaffold143 GLEAN promoter 195467 196466 0.789583 - . ID=CGI_10010015; scaffold143 WUBlastX LTR_Gypsy 200033 200524 283 + . . scaffold143 WUBlastX LTR_Gypsy 200033 200659 208 + . . scaffold143 WUBlastX LINE_RTE-RTE 211658 211720 26 - . . scaffold143 WUBlastX LINE_L1 211828 212244 34 - . . scaffold143 WUBlastX LINE_L1-Tx1 211891 212289 78 - . . scaffold143 GLEAN mRNA 211939 221171 0.564856 - . ID=CGI_10010016; scaffold143 WUBlastX LINE_L1-Tx1 211984 212277 174 - . . scaffold143 WUBlastX LINE_L1 212235 212951 218 - . . scaffold143 WUBlastX LINE_L1-Tx1 212310 212912 412 - . . scaffold143 WUBlastX LINE_CR1 212505 213083 51 - . . scaffold143 TRF Tandem_Repeat 213120 213173 108 + . . scaffold143 WUBlastX LINE_CR1-L2 215000 215515 59 + . . scaffold143 WUBlastX LINE_CR1-L2 215096 215515 88 + . . scaffold143 WUBlastX LINE_CR1-L2 215168 215515 117 + . . scaffold143 WUBlastX LINE_CR1-L2 215288 215515 118 + . . scaffold143 GLEAN promoter 215904 216903 0.812943 + . ID=CGI_10010017; scaffold143 GLEAN mRNA 216904 223355 0.812943 + . ID=CGI_10010017; scaffold143 TRF Tandem_Repeat 219236 219372 96 + . . scaffold143 TRF Tandem_Repeat 219261 219393 70 + . . scaffold143 TRF Tandem_Repeat 219677 219715 51 + . . scaffold143 GLEAN promoter 221172 222171 0.564856 - . ID=CGI_10010016; scaffold143 TRF Tandem_Repeat 221878 222395 941 + . . scaffold143 TRF Tandem_Repeat 223918 224052 225 + . . scaffold143 TRF Tandem_Repeat 226026 226151 125 + . . scaffold143 TRF Tandem_Repeat 226038 226149 139 + . . scaffold143 TRF Tandem_Repeat 226386 226440 110 + . . scaffold143 TRF Tandem_Repeat 227637 227752 130 + . . scaffold143 TRF Tandem_Repeat 228730 230124 1403 + . . scaffold143 GLEAN mRNA 232398 241663 0.648296 - . ID=CGI_10010018; scaffold143 TRF Tandem_Repeat 233818 233873 112 + . . scaffold143 TRF Tandem_Repeat 234091 234306 326 + . . scaffold143 TRF Tandem_Repeat 234192 234265 51 + . . scaffold143 TRF Tandem_Repeat 239806 239870 130 + . . scaffold143 TRF Tandem_Repeat 241292 241349 116 + . . scaffold143 GLEAN promoter 241664 242663 0.648296 - . ID=CGI_10010018; scaffold1430 WUBlastX LTR_Copia 7 834 811 + . . scaffold1431 GLEAN promoter 6361 7360 0.923849 + . ID=CGI_10004388; scaffold1431 GLEAN mRNA 7361 14251 0.923849 + . ID=CGI_10004388; scaffold1431 TRF Tandem_Repeat 14891 14939 66 + . . scaffold1431 TRF Tandem_Repeat 15108 16007 1064 + . . scaffold1431 WUBlastX DNA_Harbinger 24683 24883 83 - . . scaffold1431 GLEAN mRNA 24906 25121 0.999372 - . ID=CGI_10004389; scaffold1431 GLEAN promoter 25122 26121 0.999372 - . ID=CGI_10004389; scaffold1431 WUBlastX DNA_hAT-Tip100 27713 27790 32 - . . scaffold1431 WUBlastX DNA_hAT-Tip100 27780 28022 157 - . . scaffold1431 WUBlastX DNA_hAT-Tip100 27780 28067 150 - . . scaffold1431 WUBlastX DNA_hAT-Tip100 27786 28199 70 - . . scaffold1431 WUBlastX DNA_hAT-Tip100 29277 30812 203 - . . scaffold1431 WUBlastX DNA_hAT-Tip100 29535 30812 576 - . . scaffold1431 WUBlastX DNA_hAT-Tip100 30781 31266 28 - . . scaffold1431 WUBlastX DNA_hAT-Tip100 30809 31099 74 - . . scaffold1431 WUBlastX DNA_hAT-Tip100 30937 31191 98 - . . scaffold1431 GLEAN mRNA 34702 34896 0.999372 - . ID=CGI_10004390; scaffold1431 GLEAN promoter 34897 35896 0.999372 - . ID=CGI_10004390; scaffold1431 WUBlastX LTR_Ngaro 36006 36344 155 - . . scaffold1431 TRF Tandem_Repeat 37797 39088 1854 + . . scaffold1431 TRF Tandem_Repeat 39115 39170 85 + . . scaffold1431 TRF Tandem_Repeat 39119 39170 59 + . . scaffold1431 TRF Tandem_Repeat 43268 43297 51 + . . scaffold1431 WUBlastX LINE_L1 43773 44582 61 + . . scaffold1431 WUBlastX LINE_L1-Tx1 44034 44588 193 + . . scaffold1431 WUBlastX LINE_L1-Tx1 44609 45223 112 + . . scaffold1431 WUBlastX LINE_L1-Tx1 45303 45416 23 + . . scaffold1431 TRF Tandem_Repeat 53740 54448 665 + . . scaffold1431 TRF Tandem_Repeat 55354 56472 794 + . . scaffold1431 TRF Tandem_Repeat 58788 58924 82 + . . scaffold1431 TRF Tandem_Repeat 59725 59814 108 + . . scaffold1431 TRF Tandem_Repeat 65559 65592 68 + . . scaffold1431 TRF Tandem_Repeat 68788 69459 927 + . . scaffold1431 TRF Tandem_Repeat 71759 71821 90 + . . scaffold1431 TRF Tandem_Repeat 71762 71827 80 + . . scaffold1431 GLEAN mRNA 78529 80232 0.836016 - . ID=CGI_10004391; scaffold1431 WUBlastX DNA_Sola 78532 79359 187 - . . scaffold1431 WUBlastX DNA_Sola 79483 80364 35 - . . scaffold1431 GLEAN promoter 80233 81232 0.836016 - . ID=CGI_10004391; scaffold1431 TRF Tandem_Repeat 89000 89125 216 + . . scaffold1431 WUBlastX LTR_Gypsy 90468 90755 140 - . . scaffold1431 WUBlastX LTR_Gypsy 90516 90773 175 - . . scaffold1431 WUBlastX LTR_Gypsy-Cigr 90728 91345 496 - . . scaffold1431 WUBlastX LTR_Gypsy 91350 92399 195 - . . scaffold1431 WUBlastX LTR_Gypsy-Cigr 92948 93154 30 - . . scaffold1431 WUBlastX LTR_Gypsy-Cigr 93174 93338 67 - . . scaffold1434 GLEAN promoter 1 686 0.91181 + . ID=CGI_10000467; scaffold1434 GLEAN mRNA 687 2141 0.91181 + . ID=CGI_10000467; scaffold1436 GLEAN promoter 1 51 0.997078 + . ID=CGI_10006098; scaffold1436 GLEAN mRNA 52 445 0.997078 + . ID=CGI_10006098; scaffold1436 WUBlastX LINE_L1-Tx1 12498 12746 63 + . . scaffold1436 WUBlastX LINE_L1-Tx1 12537 12704 81 + . . scaffold1436 WUBlastX LINE_L1-Tx1 12567 12722 88 + . . scaffold1436 TRF Tandem_Repeat 12830 12955 116 + . . scaffold1436 TRF Tandem_Repeat 12841 12955 151 + . . scaffold1436 TRF Tandem_Repeat 13199 13242 88 + . . scaffold1436 TRF Tandem_Repeat 14135 14162 56 + . . scaffold1436 TRF Tandem_Repeat 14406 14520 169 + . . scaffold1436 TRF Tandem_Repeat 14406 14531 138 + . . scaffold1436 TRF Tandem_Repeat 16282 16328 60 + . . scaffold1436 GLEAN promoter 16836 17835 0.89836 + . ID=CGI_10006099; scaffold1436 GLEAN mRNA 17836 24752 0.89836 + . ID=CGI_10006099; scaffold1436 WUBlastX LTR_Gypsy 26157 26576 66 - . . scaffold1436 WUBlastX LTR_Gypsy 26247 26576 91 - . . scaffold1436 WUBlastX LTR_Gypsy 26331 26576 122 - . . scaffold1436 WUBlastX LTR_Gypsy 26572 26865 153 - . . scaffold1436 WUBlastX LTR_Gypsy 26575 26952 91 - . . scaffold1436 WUBlastX LTR_Gypsy 26575 26823 203 - . . scaffold1436 WUBlastX LINE_L1-Tx1 32107 32475 114 - . . scaffold1436 WUBlastX LINE_L1-Tx1 32125 32577 63 - . . scaffold1436 WUBlastX DNA_hAT-hATw 33174 34163 30 + . . scaffold1436 WUBlastX DNA_hAT-hATw 33489 34163 32 + . . scaffold1436 WUBlastX DNA_hAT-hATw 34187 34585 79 + . . scaffold1436 WUBlastX DNA_Harbinger 41054 41290 103 + . . scaffold1436 WUBlastX LINE_L2 43540 44364 113 + . . scaffold1436 WUBlastX LINE_CR1-L2 43687 44316 260 + . . scaffold1436 WUBlastX LINE_L2 45014 47635 1152 + . . scaffold1436 WUBlastX LINE_L2 47587 48237 249 + . . scaffold1436 TRF Tandem_Repeat 50561 50589 58 + . . scaffold1436 WUBlastX LTR_Pao 51123 51422 68 + . . scaffold1436 WUBlastX LTR_Pao 51225 51422 103 + . . scaffold1436 GLEAN promoter 53985 54984 0.946458 + . ID=CGI_10006100; scaffold1436 GLEAN mRNA 54985 60290 0.946458 + . ID=CGI_10006100; scaffold1436 WUBlastX LTR_Pao 70109 70417 169 - . . scaffold1436 WUBlastX LTR_Pao 70175 70462 37 - . . scaffold1436 WUBlastX LTR_Pao 71219 71302 27 - . . scaffold1436 WUBlastX LTR_Pao 71249 71302 33 - . . scaffold1436 TRF Tandem_Repeat 74133 74177 74 + . . scaffold1436 WUBlastX DNA_Kolobok 110895 111080 91 - . . scaffold1436 WUBlastX DNA_Kolobok 111173 111373 60 - . . scaffold1436 WUBlastX DNA_Kolobok 111194 111430 44 - . . scaffold1436 WUBlastX DNA_IS4EU 115369 115515 61 - . . scaffold1436 WUBlastX RC_Helitron 116057 116242 172 + . . scaffold1436 WUBlastX RC_Helitron 116057 116308 136 + . . scaffold1436 WUBlastX RC_Helitron 117418 117750 109 + . . scaffold1436 WUBlastX RC_Helitron 117656 117934 71 + . . scaffold1436 WUBlastX RC_Helitron 117937 118194 151 + . . scaffold1436 GLEAN promoter 126101 127100 0.993979 + . ID=CGI_10006101; scaffold1436 GLEAN mRNA 127101 128465 0.993979 + . ID=CGI_10006101; scaffold1436 TRF Tandem_Repeat 129264 129518 406 + . . scaffold1436 WUBlastX LTR_Pao 129718 129960 103 + . . scaffold1436 WUBlastX LTR_Pao 129793 129960 111 + . . scaffold1436 WUBlastX LTR_Pao 129820 130137 60 + . . scaffold1436 WUBlastX LTR_Pao 129823 130056 74 + . . scaffold1436 WUBlastX LTR_Pao 129823 130002 99 + . . scaffold1436 WUBlastX LTR_Pao 129829 129960 115 + . . scaffold1436 GLEAN mRNA 138118 140936 0.478272 - . ID=CGI_10006102; scaffold1436 GLEAN promoter 140937 141936 0.478272 - . ID=CGI_10006102; scaffold1437 TRF Tandem_Repeat 4659 4726 136 + . . scaffold1437 GLEAN mRNA 5002 9097 0.858336 - . ID=CGI_10003663; scaffold1437 GLEAN promoter 8816 9815 0.99909 + . ID=CGI_10003664; scaffold1437 GLEAN promoter 9098 10097 0.858336 - . ID=CGI_10003663; scaffold1437 GLEAN mRNA 9816 21221 0.99909 + . ID=CGI_10003664; scaffold1437 TRF Tandem_Repeat 12655 13363 956 + . . scaffold1437 TRF Tandem_Repeat 12673 13351 974 + . . scaffold1437 TRF Tandem_Repeat 13266 13347 54 + . . scaffold1437 TRF Tandem_Repeat 15019 15111 120 + . . scaffold1437 WUBlastX DNA_TcMar-Fot1 20625 20804 60 + . . scaffold1437 GLEAN mRNA 24848 45423 0.863601 - . ID=CGI_10003665; scaffold1437 GLEAN promoter 45424 46423 0.863601 - . ID=CGI_10003665; scaffold1437 GLEAN mRNA 45647 61479 0.528952 - . ID=CGI_10003666; scaffold1437 TRF Tandem_Repeat 56457 56481 50 + . . scaffold1437 GLEAN promoter 61480 62479 0.528952 - . ID=CGI_10003666; scaffold1437 GLEAN mRNA 62286 63334 1 - . ID=CGI_10003667; scaffold1437 GLEAN promoter 63335 64334 1 - . ID=CGI_10003667; scaffold1437 GLEAN mRNA 65247 67929 1 - . ID=CGI_10003668; scaffold1437 TRF Tandem_Repeat 67199 67257 50 + . . scaffold1437 GLEAN promoter 67930 68929 1 - . ID=CGI_10003668; scaffold1437 GLEAN promoter 68231 69230 0.65307 + . ID=CGI_10003669; scaffold1437 GLEAN mRNA 69231 70469 0.65307 + . ID=CGI_10003669; scaffold1438 GLEAN promoter 961 1960 0.999998 + . ID=CGI_10002214; scaffold1438 GLEAN mRNA 1961 7417 0.999998 + . ID=CGI_10002214; scaffold1438 GLEAN promoter 8508 9507 0.982192 + . ID=CGI_10002215; scaffold1438 GLEAN mRNA 9508 24885 0.982192 + . ID=CGI_10002215; scaffold1438 TRF Tandem_Repeat 10973 11102 93 + . . scaffold1438 TRF Tandem_Repeat 11018 11164 73 + . . scaffold1438 TRF Tandem_Repeat 22186 22301 110 + . . scaffold1438 TRF Tandem_Repeat 22341 22434 82 + . . scaffold1438 TRF Tandem_Repeat 22629 22713 91 + . . scaffold1438 TRF Tandem_Repeat 23003 23129 121 + . . scaffold1438 TRF Tandem_Repeat 23221 23314 82 + . . scaffold1438 GLEAN mRNA 31197 36263 0.999661 - . ID=CGI_10002216; scaffold1438 GLEAN promoter 36264 37263 0.999661 - . ID=CGI_10002216; scaffold1438 WUBlastX LINE_RTE-X 36494 36835 75 + . . scaffold1439 TRF Tandem_Repeat 7801 7840 53 + . . scaffold1439 TRF Tandem_Repeat 8260 8332 146 + . . scaffold1439 TRF Tandem_Repeat 21198 21222 50 + . . scaffold1439 WUBlastX DNA_IS4EU 23668 24252 65 + . . scaffold1439 WUBlastX LINE_L2 26412 26768 47 + . . scaffold1439 WUBlastX LINE_L2 26526 26774 95 + . . scaffold1439 WUBlastX LINE_L2 26586 26774 102 + . . scaffold1439 TRF Tandem_Repeat 27114 27928 767 + . . scaffold1439 TRF Tandem_Repeat 27999 28119 120 + . . scaffold1439 TRF Tandem_Repeat 30531 30606 89 + . . scaffold1439 TRF Tandem_Repeat 30534 30610 97 + . . scaffold1439 TRF Tandem_Repeat 33222 33263 84 + . . scaffold1439 WUBlastX LINE_RTE-X 34608 34973 59 + . . scaffold1439 WUBlastX LTR_Ngaro 35692 35877 107 - . . scaffold1439 WUBlastX LTR_Ngaro 35832 36347 152 - . . scaffold1439 WUBlastX LINE_L1-Tx1 40135 40458 158 + . . scaffold1439 WUBlastX LINE_L1-Tx1 40442 41083 215 + . . scaffold1439 WUBlastX LINE_L1 41037 41600 177 + . . scaffold1439 WUBlastX LINE_L1-Tx1 41576 42799 354 + . . scaffold1439 WUBlastX LINE_L1-Tx1 42880 43071 27 + . . scaffold1439 WUBlastX LINE_L1-Tx1 43065 43229 40 + . . scaffold1439 WUBlastX LINE_L1-Tx1 43250 43792 69 + . . scaffold1439 TRF Tandem_Repeat 43843 43903 115 + . . scaffold1439 TRF Tandem_Repeat 44728 44757 51 + . . scaffold1439 TRF Tandem_Repeat 44869 45608 826 + . . scaffold1439 TRF Tandem_Repeat 46691 46772 58 + . . scaffold1439 WUBlastX LINE_RTE-X 47342 47461 66 - . . scaffold1439 TRF Tandem_Repeat 47628 47683 103 + . . scaffold1439 WUBlastX LINE_RTE-X 49420 49785 41 - . . scaffold1439 WUBlastX LINE_RTE-X 49477 49836 72 - . . scaffold1439 WUBlastX LINE_RTE-X 49519 49812 139 - . . scaffold1439 TRF Tandem_Repeat 49995 50021 54 + . . scaffold1439 TRF Tandem_Repeat 50584 50624 82 + . . scaffold1439 TRF Tandem_Repeat 52959 52991 66 + . . scaffold1439 TRF Tandem_Repeat 66559 66594 72 + . . scaffold1439 TRF Tandem_Repeat 69172 69205 59 + . . scaffold1439 TRF Tandem_Repeat 78055 78105 102 + . . scaffold1439 WUBlastX LTR_Ngaro 78126 78560 91 - . . scaffold1439 WUBlastX LTR_Ngaro 78156 78728 23 - . . scaffold1439 WUBlastX LTR_Ngaro 78800 79036 92 - . . scaffold1439 TRF Tandem_Repeat 81752 82008 198 + . . scaffold1439 WUBlastX LTR_Ngaro 83439 83783 141 - . . scaffold1439 WUBlastX LTR_Ngaro 83777 84211 142 - . . scaffold1439 TRF Tandem_Repeat 86795 87588 1017 + . . scaffold1439 WUBlastX LTR_Gypsy 88356 88502 70 - . . scaffold1439 WUBlastX LTR_Gypsy 88502 88747 91 - . . scaffold1439 WUBlastX LTR_Gypsy 88613 88843 50 - . . scaffold1439 WUBlastX LTR_Gypsy 88613 88795 89 - . . scaffold1439 TRF Tandem_Repeat 90538 90569 55 + . . scaffold1439 WUBlastX LINE_Penelope 93200 94273 666 + . . scaffold1439 WUBlastX LINE_Penelope 94153 94953 311 + . . scaffold144 GLEAN mRNA 5309 5653 0.999999 - . ID=CGI_10022875; scaffold144 GLEAN promoter 5654 6653 0.999999 - . ID=CGI_10022875; scaffold144 TRF Tandem_Repeat 7566 7632 125 + . . scaffold144 TRF Tandem_Repeat 10230 10292 126 + . . scaffold144 WUBlastX DNA_TcMar-Marin 11569 11781 65 - . . scaffold144 WUBlastX DNA_TcMar-Marin 11593 11820 56 - . . scaffold144 WUBlastX DNA_TcMar-Marin 11680 11961 30 - . . scaffold144 TRF Tandem_Repeat 15062 15128 89 + . . scaffold144 TRF Tandem_Repeat 15062 15128 80 + . . scaffold144 GLEAN mRNA 17883 18413 0.997344 - . ID=CGI_10022876; scaffold144 GLEAN promoter 18414 19413 0.997344 - . ID=CGI_10022876; scaffold144 WUBlastX LINE_L1-Tx1 21062 23302 713 - . . scaffold144 GLEAN promoter 31353 32352 0.668908 + . ID=CGI_10022877; scaffold144 GLEAN mRNA 32353 46416 0.668908 + . ID=CGI_10022877; scaffold144 TRF Tandem_Repeat 34436 34524 151 + . . scaffold144 TRF Tandem_Repeat 44396 44432 74 + . . scaffold144 TRF Tandem_Repeat 45257 45302 92 + . . scaffold144 WUBlastX LINE_L2 49375 49452 21 + . . scaffold144 WUBlastX LINE_L2 49503 50549 467 + . . scaffold144 TRF Tandem_Repeat 54697 55686 1230 + . . scaffold144 GLEAN promoter 56916 57915 0.343048 + . ID=CGI_10022878; scaffold144 TRF Tandem_Repeat 57142 57203 81 + . . scaffold144 GLEAN mRNA 57916 84621 0.343048 + . ID=CGI_10022878; scaffold144 TRF Tandem_Repeat 62892 62953 124 + . . scaffold144 TRF Tandem_Repeat 63288 63340 106 + . . scaffold144 GLEAN mRNA 65710 73586 0.987924 - . ID=CGI_10022879; scaffold144 TRF Tandem_Repeat 70374 71083 899 + . . scaffold144 TRF Tandem_Repeat 71090 71128 60 + . . scaffold144 GLEAN promoter 73587 74586 0.987924 - . ID=CGI_10022879; scaffold144 TRF Tandem_Repeat 73641 73984 206 + . . scaffold144 GLEAN mRNA 82720 88774 0.987917 - . ID=CGI_10022880; scaffold144 TRF Tandem_Repeat 87324 87549 209 + . . scaffold144 TRF Tandem_Repeat 87324 87521 333 + . . scaffold144 GLEAN promoter 88775 89774 0.987917 - . ID=CGI_10022880; scaffold144 TRF Tandem_Repeat 92740 92907 155 + . . scaffold144 TRF Tandem_Repeat 92746 92978 170 + . . scaffold144 TRF Tandem_Repeat 93595 93688 116 + . . scaffold144 TRF Tandem_Repeat 93690 93811 113 + . . scaffold144 TRF Tandem_Repeat 93735 93823 128 + . . scaffold144 GLEAN mRNA 96873 97268 0.9996 - . ID=CGI_10022881; scaffold144 GLEAN promoter 97269 98268 0.9996 - . ID=CGI_10022881; scaffold144 WUBlastX LINE_RTE-X 106694 106897 42 - . . scaffold144 GLEAN mRNA 113045 133338 0.801897 - . ID=CGI_10022882; scaffold144 TRF Tandem_Repeat 114965 114999 70 + . . scaffold144 TRF Tandem_Repeat 124940 125083 105 + . . scaffold144 GLEAN promoter 133339 134338 0.801897 - . ID=CGI_10022882; scaffold144 GLEAN promoter 137697 138696 0.734554 + . ID=CGI_10022883; scaffold144 GLEAN mRNA 138697 139743 0.734554 + . ID=CGI_10022883; scaffold144 GLEAN promoter 147351 148350 0.999949 + . ID=CGI_10022884; scaffold144 GLEAN mRNA 148351 174013 0.999949 + . ID=CGI_10022884; scaffold144 TRF Tandem_Repeat 164923 165385 505 + . . scaffold144 TRF Tandem_Repeat 164928 165385 290 + . . scaffold144 TRF Tandem_Repeat 164968 165385 354 + . . scaffold144 TRF Tandem_Repeat 166020 166207 107 + . . scaffold144 TRF Tandem_Repeat 169359 169415 51 + . . scaffold144 TRF Tandem_Repeat 171898 172281 612 + . . scaffold144 TRF Tandem_Repeat 171898 172281 563 + . . scaffold144 GLEAN mRNA 175661 181238 1 - . ID=CGI_10022885; scaffold144 GLEAN promoter 181239 182238 1 - . ID=CGI_10022885; scaffold144 GLEAN mRNA 183783 190792 0.654733 - . ID=CGI_10022886; scaffold144 GLEAN promoter 190073 191072 0.999372 + . ID=CGI_10022887; scaffold144 TRF Tandem_Repeat 190139 190207 104 + . . scaffold144 GLEAN promoter 190793 191792 0.654733 - . ID=CGI_10022886; scaffold144 GLEAN mRNA 191073 191258 0.999372 + . ID=CGI_10022887; scaffold144 TRF Tandem_Repeat 193687 193734 96 + . . scaffold144 TRF Tandem_Repeat 194746 195298 759 + . . scaffold144 TRF Tandem_Repeat 197428 197465 76 + . . scaffold144 GLEAN mRNA 198062 200163 0.831298 - . ID=CGI_10022888; scaffold144 GLEAN promoter 200164 201163 0.831298 - . ID=CGI_10022888; scaffold144 TRF Tandem_Repeat 201751 201798 96 + . . scaffold144 GLEAN promoter 204039 205038 0.614051 + . ID=CGI_10022889; scaffold144 GLEAN mRNA 205039 216106 0.614051 + . ID=CGI_10022889; scaffold144 GLEAN mRNA 218054 219988 0.999982 - . ID=CGI_10022890; scaffold144 GLEAN promoter 219989 220988 0.999982 - . ID=CGI_10022890; scaffold144 TRF Tandem_Repeat 223529 223914 127 + . . scaffold144 TRF Tandem_Repeat 223533 223825 258 + . . scaffold144 GLEAN mRNA 224041 230478 1 - . ID=CGI_10022891; scaffold144 GLEAN promoter 230479 231478 1 - . ID=CGI_10022891; scaffold144 TRF Tandem_Repeat 248709 248945 318 + . . scaffold144 TRF Tandem_Repeat 266531 266723 311 + . . scaffold144 GLEAN mRNA 270052 270666 0.393792 - . ID=CGI_10022892; scaffold144 TRF Tandem_Repeat 270266 270621 487 + . . scaffold144 GLEAN promoter 270667 271666 0.393792 - . ID=CGI_10022892; scaffold144 GLEAN mRNA 291137 318722 0.676766 - . ID=CGI_10022893; scaffold144 TRF Tandem_Repeat 293546 293594 98 + . . scaffold144 TRF Tandem_Repeat 293839 293927 97 + . . scaffold144 GLEAN promoter 318723 319722 0.676766 - . ID=CGI_10022893; scaffold144 TRF Tandem_Repeat 329525 329597 146 + . . scaffold144 GLEAN mRNA 330075 331855 0.775887 - . ID=CGI_10022894; scaffold144 GLEAN promoter 331856 332855 0.775887 - . ID=CGI_10022894; scaffold144 GLEAN mRNA 333598 336331 1 - . ID=CGI_10022895; scaffold144 GLEAN promoter 336332 337331 1 - . ID=CGI_10022895; scaffold144 GLEAN mRNA 339732 344778 1 - . ID=CGI_10022896; scaffold144 TRF Tandem_Repeat 344145 344214 122 + . . scaffold144 GLEAN promoter 344779 345778 1 - . ID=CGI_10022896; scaffold144 TRF Tandem_Repeat 345187 345229 68 + . . scaffold144 TRF Tandem_Repeat 364853 365021 223 + . . scaffold144 TRF Tandem_Repeat 371140 371302 265 + . . scaffold144 TRF Tandem_Repeat 376420 376470 102 + . . scaffold144 WUBlastX DNA_TcMar-Marin 383652 383774 42 - . . scaffold144 WUBlastX DNA_TcMar-Marin 384070 384273 36 - . . scaffold144 GLEAN mRNA 384921 390504 0.64132 - . ID=CGI_10022897; scaffold144 TRF Tandem_Repeat 387873 388196 538 + . . scaffold144 TRF Tandem_Repeat 389156 389206 102 + . . scaffold144 GLEAN promoter 390505 391504 0.64132 - . ID=CGI_10022897; scaffold144 GLEAN mRNA 397188 398550 0.643657 - . ID=CGI_10022898; scaffold144 GLEAN promoter 398551 399550 0.643657 - . ID=CGI_10022898; scaffold144 WUBlastX LINE_RTE-X 401298 401513 86 + . . scaffold144 WUBlastX LINE_RTE-X 401298 401672 48 + . . scaffold144 TRF Tandem_Repeat 403363 403422 120 + . . scaffold144 TRF Tandem_Repeat 405141 405197 114 + . . scaffold144 GLEAN mRNA 405321 429894 0.694226 - . ID=CGI_10022899; scaffold144 TRF Tandem_Repeat 405588 405653 132 + . . scaffold144 TRF Tandem_Repeat 418115 418182 136 + . . scaffold144 TRF Tandem_Repeat 424663 425108 240 + . . scaffold144 GLEAN promoter 429895 430894 0.694226 - . ID=CGI_10022899; scaffold144 TRF Tandem_Repeat 432482 432540 57 + . . scaffold144 GLEAN promoter 433094 434093 1 + . ID=CGI_10022901; scaffold144 GLEAN mRNA 434094 437380 1 + . ID=CGI_10022901; scaffold144 GLEAN mRNA 438859 442935 0.777732 - . ID=CGI_10022902; scaffold144 GLEAN promoter 442936 443935 0.777732 - . ID=CGI_10022902; scaffold144 TRF Tandem_Repeat 451576 451639 128 + . . scaffold144 TRF Tandem_Repeat 455428 455489 106 + . . scaffold144 TRF Tandem_Repeat 457250 457290 73 + . . scaffold144 TRF Tandem_Repeat 458450 458482 57 + . . scaffold144 TRF Tandem_Repeat 461614 462351 833 + . . scaffold144 WUBlastX LINE_CR1-L2 462860 463339 123 - . . scaffold144 WUBlastX DNA_Harbinger 465824 465991 49 - . . scaffold144 WUBlastX LINE_L1 467964 468026 29 - . . scaffold144 WUBlastX LINE_L2 468039 468224 46 - . . scaffold144 WUBlastX LINE_L2 468105 468233 58 - . . scaffold144 WUBlastX LINE_L2 468226 469257 651 - . . scaffold144 WUBlastX LINE_L2 468256 469683 205 - . . scaffold144 WUBlastX LINE_L2 468256 469443 329 - . . scaffold144 GLEAN promoter 482582 483581 0.893641 + . ID=CGI_10022903; scaffold144 GLEAN mRNA 483582 485323 0.893641 + . ID=CGI_10022903; scaffold144 TRF Tandem_Repeat 484873 484994 154 + . . scaffold144 TRF Tandem_Repeat 485683 485707 50 + . . scaffold144 TRF Tandem_Repeat 485991 486158 126 + . . scaffold144 TRF Tandem_Repeat 487150 487416 224 + . . scaffold144 TRF Tandem_Repeat 487178 487412 307 + . . scaffold144 TRF Tandem_Repeat 487178 487412 150 + . . scaffold144 TRF Tandem_Repeat 509474 509539 53 + . . scaffold144 TRF Tandem_Repeat 509609 509667 73 + . . scaffold144 TRF Tandem_Repeat 547123 547187 130 + . . scaffold144 TRF Tandem_Repeat 559120 559146 54 + . . scaffold144 TRF Tandem_Repeat 560891 560943 106 + . . scaffold144 TRF Tandem_Repeat 567576 567605 60 + . . scaffold144 TRF Tandem_Repeat 569332 569376 90 + . . scaffold144 WUBlastX LINE_RTE-X 604970 605497 119 - . . scaffold144 WUBlastX LINE_RTE-X 605442 605957 116 - . . scaffold144 WUBlastX LINE_RTE-X 605826 606005 46 - . . scaffold144 TRF Tandem_Repeat 606948 606993 85 + . . scaffold144 TRF Tandem_Repeat 615185 615223 78 + . . scaffold144 GLEAN mRNA 632441 632734 0.592376 - . ID=CGI_10022904; scaffold144 GLEAN promoter 632735 633734 0.592376 - . ID=CGI_10022904; scaffold144 WUBlastX LTR_DIRS 632990 633226 40 - . . scaffold144 WUBlastX LTR_Ngaro 633071 633940 350 - . . scaffold144 WUBlastX LTR_Ngaro 633963 634589 297 - . . scaffold144 TRF Tandem_Repeat 635149 635252 50 + . . scaffold144 TRF Tandem_Repeat 643784 643946 177 + . . scaffold144 TRF Tandem_Repeat 649022 649055 59 + . . scaffold144 GLEAN mRNA 649908 651329 1 - . ID=CGI_10022905; scaffold144 GLEAN promoter 651330 652329 1 - . ID=CGI_10022905; scaffold144 TRF Tandem_Repeat 655000 655030 62 + . . scaffold144 WUBlastX LINE_RTE-X 657109 657576 124 + . . scaffold144 WUBlastX LINE_RTE-X 657576 657779 29 + . . scaffold144 WUBlastX LINE_RTE-X 657612 657821 51 + . . scaffold144 WUBlastX LINE_RTE-X 657806 657937 33 + . . scaffold144 WUBlastX LINE_RTE-X 657809 657904 59 + . . scaffold144 TRF Tandem_Repeat 660868 661165 362 + . . scaffold144 TRF Tandem_Repeat 660868 661165 362 + . . scaffold144 GLEAN promoter 663954 664953 0.999999 + . ID=CGI_10022906; scaffold144 GLEAN mRNA 664954 666862 0.999999 + . ID=CGI_10022906; scaffold144 GLEAN promoter 666790 667789 0.685416 + . ID=CGI_10022907; scaffold144 GLEAN mRNA 667790 674112 0.685416 + . ID=CGI_10022907; scaffold144 GLEAN promoter 673681 674680 0.458435 + . ID=CGI_10022908; scaffold144 GLEAN mRNA 674681 691299 0.458435 + . ID=CGI_10022908; scaffold144 TRF Tandem_Repeat 679021 679058 76 + . . scaffold144 GLEAN promoter 693375 694374 1 + . ID=CGI_10022909; scaffold144 GLEAN mRNA 694375 695673 1 + . ID=CGI_10022909; scaffold144 GLEAN promoter 696046 697045 0.620366 + . ID=CGI_10022910; scaffold144 GLEAN mRNA 697046 713518 0.620366 + . ID=CGI_10022910; scaffold144 TRF Tandem_Repeat 710101 710161 115 + . . scaffold144 TRF Tandem_Repeat 711815 711848 68 + . . scaffold144 GLEAN promoter 716955 717954 0.999999 + . ID=CGI_10022911; scaffold144 GLEAN mRNA 717955 719691 0.999999 + . ID=CGI_10022911; scaffold144 TRF Tandem_Repeat 732818 732847 60 + . . scaffold144 GLEAN promoter 733817 734816 0.999674 + . ID=CGI_10022912; scaffold144 GLEAN mRNA 734817 748000 0.999674 + . ID=CGI_10022912; scaffold144 GLEAN mRNA 735941 739993 0.999982 - . ID=CGI_10022913; scaffold144 TRF Tandem_Repeat 736030 736129 200 + . . scaffold144 GLEAN promoter 739994 740993 0.999982 - . ID=CGI_10022913; scaffold144 GLEAN mRNA 740080 748343 0.999597 - . ID=CGI_10022914; scaffold144 TRF Tandem_Repeat 741516 741545 60 + . . scaffold144 TRF Tandem_Repeat 741851 741888 76 + . . scaffold144 TRF Tandem_Repeat 741997 742021 50 + . . scaffold144 TRF Tandem_Repeat 742916 742945 60 + . . scaffold144 TRF Tandem_Repeat 743021 743065 65 + . . scaffold144 TRF Tandem_Repeat 745887 745925 69 + . . scaffold144 GLEAN promoter 748344 749343 0.999597 - . ID=CGI_10022914; scaffold144 TRF Tandem_Repeat 752804 752855 104 + . . scaffold144 TRF Tandem_Repeat 752855 752893 78 + . . scaffold144 TRF Tandem_Repeat 753774 753873 51 + . . scaffold144 TRF Tandem_Repeat 753774 753962 202 + . . scaffold144 TRF Tandem_Repeat 753816 753962 68 + . . scaffold144 TRF Tandem_Repeat 755507 755638 122 + . . scaffold144 GLEAN promoter 768994 769993 0.941314 + . ID=CGI_10022915; scaffold144 GLEAN mRNA 769994 771323 0.941314 + . ID=CGI_10022915; scaffold144 WUBlastX LTR_Gypsy 771483 771920 46 - . . scaffold144 WUBlastX LTR_Gypsy 771576 771920 77 - . . scaffold144 GLEAN mRNA 778017 801842 0.628464 - . ID=CGI_10022916; scaffold144 TRF Tandem_Repeat 779828 779889 65 + . . scaffold144 TRF Tandem_Repeat 779828 779889 83 + . . scaffold144 TRF Tandem_Repeat 786799 786902 190 + . . scaffold144 TRF Tandem_Repeat 794169 794256 167 + . . scaffold144 GLEAN promoter 801843 802826 0.628464 - . ID=CGI_10022916; scaffold1440 GLEAN mRNA 1117 7828 0.702385 - . ID=CGI_10008351; scaffold1440 GLEAN promoter 6880 7879 0.556537 + . ID=CGI_10008352; scaffold1440 GLEAN promoter 7829 8828 0.702385 - . ID=CGI_10008351; scaffold1440 GLEAN mRNA 7880 25706 0.556537 + . ID=CGI_10008352; scaffold1440 TRF Tandem_Repeat 28714 28770 114 + . . scaffold1440 GLEAN mRNA 38192 43331 1 - . ID=CGI_10008353; scaffold1440 WUBlastX LTR_Pao 39282 40409 506 + . . scaffold1440 WUBlastX LTR_Pao 39483 40415 877 + . . scaffold1440 GLEAN promoter 43332 44331 1 - . ID=CGI_10008353; scaffold1440 WUBlastX DNA_Maverick 43760 45175 723 + . . scaffold1440 WUBlastX DNA_Maverick 45294 45839 415 + . . scaffold1440 GLEAN mRNA 46324 69343 0.667435 - . ID=CGI_10008354; scaffold1440 WUBlastX DNA_Maverick 48557 49042 218 - . . scaffold1440 WUBlastX DNA_Maverick 48557 49144 175 - . . scaffold1440 WUBlastX DNA_Maverick 49099 49173 23 - . . scaffold1440 TRF Tandem_Repeat 56275 57236 1286 + . . scaffold1440 TRF Tandem_Repeat 57984 58439 556 + . . scaffold1440 TRF Tandem_Repeat 63093 63273 80 + . . scaffold1440 TRF Tandem_Repeat 68146 68172 54 + . . scaffold1440 GLEAN promoter 69344 70343 0.667435 - . ID=CGI_10008354; scaffold1440 TRF Tandem_Repeat 75387 75624 390 + . . scaffold1440 GLEAN promoter 75944 76943 0.733495 + . ID=CGI_10008355; scaffold1440 GLEAN mRNA 76944 77126 0.733495 + . ID=CGI_10008355; scaffold1440 TRF Tandem_Repeat 77769 78719 916 + . . scaffold1440 GLEAN mRNA 79181 79890 0.833751 - . ID=CGI_10008356; scaffold1440 GLEAN promoter 79891 80890 0.833751 - . ID=CGI_10008356; scaffold1440 TRF Tandem_Repeat 80361 80404 88 + . . scaffold1440 WUBlastX RC_Helitron 80532 80747 50 + . . scaffold1440 TRF Tandem_Repeat 85350 85446 149 + . . scaffold1440 TRF Tandem_Repeat 93885 93925 82 + . . scaffold1440 WUBlastX LINE_RTE-X 97507 98340 282 - . . scaffold1440 TRF Tandem_Repeat 98799 99062 414 + . . scaffold1440 TRF Tandem_Repeat 133894 133947 99 + . . scaffold1440 WUBlastX RC_Helitron 134195 134497 42 - . . scaffold1440 WUBlastX DNA_Academ 138762 140228 117 + . . scaffold1440 WUBlastX DNA_Academ 140770 141138 93 + . . scaffold1440 TRF Tandem_Repeat 161420 161469 82 + . . scaffold1440 TRF Tandem_Repeat 169599 169663 112 + . . scaffold1440 TRF Tandem_Repeat 171057 171145 54 + . . scaffold1440 GLEAN promoter 174302 175301 0.333291 + . ID=CGI_10008358; scaffold1440 GLEAN mRNA 175302 192419 0.333291 + . ID=CGI_10008358; scaffold1440 TRF Tandem_Repeat 177908 177954 94 + . . scaffold1440 TRF Tandem_Repeat 178622 178655 68 + . . scaffold1440 TRF Tandem_Repeat 186870 186903 50 + . . scaffold1440 TRF Tandem_Repeat 187051 187094 61 + . . scaffold1440 WUBlastX DNA_Sola 188584 189777 232 + . . scaffold1440 WUBlastX DNA_Sola 188827 189789 284 + . . scaffold1440 WUBlastX DNA_Sola 189782 190339 361 + . . scaffold1440 TRF Tandem_Repeat 194601 194649 98 + . . scaffold1440 TRF Tandem_Repeat 196179 196385 218 + . . scaffold1440 TRF Tandem_Repeat 196182 196387 148 + . . scaffold1440 TRF Tandem_Repeat 196192 196387 165 + . . scaffold1440 TRF Tandem_Repeat 201579 201620 84 + . . scaffold1440 TRF Tandem_Repeat 204995 205042 69 + . . scaffold1440 TRF Tandem_Repeat 208014 208105 62 + . . scaffold1441 GLEAN mRNA 1448 7952 0.958888 - . ID=CGI_10001618; scaffold1441 GLEAN promoter 7953 8952 0.958888 - . ID=CGI_10001618; scaffold1441 GLEAN promoter 15031 16030 0.999676 + . ID=CGI_10001619; scaffold1441 GLEAN mRNA 16031 22105 0.999676 + . ID=CGI_10001619; scaffold1441 GLEAN mRNA 26678 27767 1 - . ID=CGI_10001620; scaffold1441 GLEAN promoter 27768 27994 1 - . ID=CGI_10001620; scaffold1442 GLEAN mRNA 5012 20569 0.987275 - . ID=CGI_10003583; scaffold1442 WUBlastX LINE_L1-Tx1 19566 19772 34 - . . scaffold1442 WUBlastX LINE_L1-Tx1 19599 19874 50 - . . scaffold1442 WUBlastX LINE_L1-Tx1 19608 19829 74 - . . scaffold1442 WUBlastX LINE_L1 19847 19954 22 - . . scaffold1442 WUBlastX LINE_L1-Tx1 19897 20304 101 - . . scaffold1442 GLEAN promoter 20570 21569 0.987275 - . ID=CGI_10003583; scaffold1442 TRF Tandem_Repeat 23299 23335 56 + . . scaffold1442 GLEAN mRNA 28034 38698 1 - . ID=CGI_10003584; scaffold1442 TRF Tandem_Repeat 29720 30692 1148 + . . scaffold1442 TRF Tandem_Repeat 35605 35652 87 + . . scaffold1442 WUBlastX LINE_L1-Tx1 35767 36588 84 - . . scaffold1442 WUBlastX LINE_L1-Tx1 36602 38143 928 - . . scaffold1442 WUBlastX LINE_L1-Tx1 38142 38627 293 - . . scaffold1442 WUBlastX LINE_CR1 38562 38723 32 - . . scaffold1442 GLEAN promoter 38699 39698 1 - . ID=CGI_10003584; scaffold1442 GLEAN mRNA 41071 46143 0.993907 - . ID=CGI_10003585; scaffold1442 GLEAN promoter 46144 47143 0.993907 - . ID=CGI_10003585; scaffold1442 GLEAN mRNA 57740 58739 1 - . ID=CGI_10003586; scaffold1442 WUBlastX DNA_MuDR 58284 58499 91 - . . scaffold1442 GLEAN promoter 58740 59739 1 - . ID=CGI_10003586; scaffold1442 TRF Tandem_Repeat 60978 61015 60 + . . scaffold1442 WUBlastX DNA_Harbinger 64264 64467 33 - . . scaffold1442 WUBlastX DNA_Harbinger 64408 64518 44 - . . scaffold1442 WUBlastX DNA_Harbinger 64505 64975 220 - . . scaffold1442 GLEAN promoter 71882 72881 0.853071 + . ID=CGI_10003587; scaffold1442 WUBlastX DNA_En-Spm 72694 72918 31 - . . scaffold1442 GLEAN mRNA 72882 75260 0.853071 + . ID=CGI_10003587; scaffold1442 WUBlastX LTR_ERV1 74907 75128 24 + . . scaffold1442 WUBlastX DNA_PiggyBac 77044 77340 89 - . . scaffold1444 GLEAN mRNA 5736 10614 0.999545 - . ID=CGI_10001206; scaffold1444 GLEAN promoter 10615 11614 0.999545 - . ID=CGI_10001206; scaffold1445 GLEAN mRNA 22 11956 0.969604 - . ID=CGI_10010363; scaffold1445 GLEAN promoter 11957 12956 0.969604 - . ID=CGI_10010363; scaffold1445 GLEAN mRNA 16143 32311 0.701502 - . ID=CGI_10010364; scaffold1445 GLEAN promoter 32312 33311 0.701502 - . ID=CGI_10010364; scaffold1445 GLEAN mRNA 34788 35300 0.999372 - . ID=CGI_10010365; scaffold1445 GLEAN promoter 35301 36300 0.999372 - . ID=CGI_10010365; scaffold1445 TRF Tandem_Repeat 38753 38803 102 + . . scaffold1445 WUBlastX LTR_Gypsy 48066 49385 242 - . . scaffold1445 WUBlastX LTR_Gypsy 48312 49976 1495 - . . scaffold1445 WUBlastX LTR_Gypsy 49972 50304 183 - . . scaffold1445 WUBlastX LTR_Gypsy 49972 50253 242 - . . scaffold1445 WUBlastX LTR_DIRS 51234 51629 40 - . . scaffold1445 WUBlastX LTR_DIRS 51530 52333 182 - . . scaffold1445 WUBlastX LTR_DIRS 51680 52321 184 - . . scaffold1445 WUBlastX LTR_DIRS 51869 52312 198 - . . scaffold1445 WUBlastX LTR_DIRS 52297 52776 46 - . . scaffold1445 WUBlastX LTR_DIRS 52303 52686 56 - . . scaffold1445 WUBlastX LTR_DIRS 52775 53056 101 - . . scaffold1445 WUBlastX LTR_DIRS 52776 53426 79 - . . scaffold1445 WUBlastX LTR_DIRS 53175 53384 88 - . . scaffold1445 WUBlastX LTR_DIRS 53208 53486 89 - . . scaffold1445 WUBlastX LTR_DIRS 53462 53560 54 - . . scaffold1445 TRF Tandem_Repeat 55278 55473 180 + . . scaffold1445 TRF Tandem_Repeat 56142 56376 263 + . . scaffold1445 TRF Tandem_Repeat 68018 68068 50 + . . scaffold1445 TRF Tandem_Repeat 68018 68088 62 + . . scaffold1445 TRF Tandem_Repeat 68036 68087 56 + . . scaffold1445 TRF Tandem_Repeat 71557 71614 91 + . . scaffold1445 TRF Tandem_Repeat 75339 75396 116 + . . scaffold1445 GLEAN mRNA 76643 89177 0.999675 - . ID=CGI_10010366; scaffold1445 GLEAN promoter 89178 90177 0.999675 - . ID=CGI_10010366; scaffold1445 TRF Tandem_Repeat 92554 92588 70 + . . scaffold1445 TRF Tandem_Repeat 96685 96720 72 + . . scaffold1445 TRF Tandem_Repeat 97890 97934 90 + . . scaffold1445 TRF Tandem_Repeat 102353 102405 106 + . . scaffold1445 GLEAN mRNA 103852 114549 0.989218 - . ID=CGI_10010367; scaffold1445 TRF Tandem_Repeat 111587 111630 88 + . . scaffold1445 TRF Tandem_Repeat 112153 112186 68 + . . scaffold1445 GLEAN promoter 114550 115549 0.989218 - . ID=CGI_10010367; scaffold1445 TRF Tandem_Repeat 115295 115343 98 + . . scaffold1445 GLEAN mRNA 117474 128760 0.507004 - . ID=CGI_10010368; scaffold1445 GLEAN promoter 128761 129760 0.507004 - . ID=CGI_10010368; scaffold1445 GLEAN promoter 129812 130811 0.788131 + . ID=CGI_10010369; scaffold1445 GLEAN mRNA 130812 135436 0.788131 + . ID=CGI_10010369; scaffold1445 TRF Tandem_Repeat 134497 134726 311 + . . scaffold1445 GLEAN promoter 134829 135828 0.904297 + . ID=CGI_10010370; scaffold1445 GLEAN mRNA 135829 138603 0.904297 + . ID=CGI_10010370; scaffold1445 WUBlastX LINE_Jockey 137321 137524 35 + . . scaffold1445 TRF Tandem_Repeat 146227 146302 152 + . . scaffold1445 TRF Tandem_Repeat 164874 165198 476 + . . scaffold1445 WUBlastX LTR_Gypsy 167552 168040 165 - . . scaffold1445 WUBlastX LTR_Gypsy 168022 168318 169 - . . scaffold1445 WUBlastX LTR_Gypsy 168085 168393 153 - . . scaffold1445 WUBlastX LTR_Gypsy 168145 168459 98 - . . scaffold1445 WUBlastX LINE_CR1 170350 171753 683 + . . scaffold1445 WUBlastX LINE_CR1 170395 172023 520 + . . scaffold1445 WUBlastX LINE_CR1 171981 172649 501 + . . scaffold1445 WUBlastX LINE_L2 176511 176621 41 + . . scaffold1445 WUBlastX LINE_CR1 176532 179747 2072 + . . scaffold1445 WUBlastX LTR_Copia 181067 181567 91 - . . scaffold1445 WUBlastX LTR_Gypsy 181148 182155 751 - . . scaffold1445 WUBlastX LTR_Gypsy 182054 182203 34 - . . scaffold1445 WUBlastX LTR_Gypsy 182087 182173 41 - . . scaffold1445 WUBlastX LTR_Gypsy 182727 182765 26 - . . scaffold1445 WUBlastX LINE_RTE-X 186561 186644 44 + . . scaffold1445 WUBlastX LINE_RTE-X 186740 187099 39 + . . scaffold1445 WUBlastX LINE_RTE-X 186794 187090 107 + . . scaffold1445 TRF Tandem_Repeat 187635 187674 80 + . . scaffold1445 TRF Tandem_Repeat 188893 189121 386 + . . scaffold1445 TRF Tandem_Repeat 190194 190498 479 + . . scaffold1445 GLEAN mRNA 192282 192506 0.999372 - . ID=CGI_10010371; scaffold1445 GLEAN promoter 192507 193506 0.999372 - . ID=CGI_10010371; scaffold1445 GLEAN mRNA 192510 193966 0.699862 - . ID=CGI_10010372; scaffold1445 WUBlastX LTR_Gypsy-Cigr 192967 193578 164 - . . scaffold1445 GLEAN promoter 193967 194966 0.699862 - . ID=CGI_10010372; scaffold1445 TRF Tandem_Repeat 209039 209073 61 + . . scaffold1445 GLEAN promoter 211316 212315 0.590067 + . ID=CGI_10010373; scaffold1445 TRF Tandem_Repeat 212025 212104 97 + . . scaffold1445 GLEAN mRNA 212316 212867 0.590067 + . ID=CGI_10010373; scaffold1445 GLEAN mRNA 215438 231778 0.644744 - . ID=CGI_10010374; scaffold1445 WUBlastX LTR_Gypsy 215486 215776 43 - . . scaffold1445 WUBlastX LTR_Gypsy 215630 215926 39 - . . scaffold1445 WUBlastX LINE_L1-Tx1 216414 216788 29 - . . scaffold1445 WUBlastX LINE_L1-Tx1 216492 218138 369 - . . scaffold1445 WUBlastX LINE_L1 217647 218231 45 - . . scaffold1445 WUBlastX LTR_Gypsy 222397 222723 20 - . . scaffold1445 TRF Tandem_Repeat 225583 225670 131 + . . scaffold1445 WUBlastX LTR_Gypsy 226294 226620 20 - . . scaffold1445 WUBlastX LTR_Gypsy 226977 227303 20 - . . scaffold1445 TRF Tandem_Repeat 231018 231593 408 + . . scaffold1445 TRF Tandem_Repeat 231035 231537 424 + . . scaffold1445 TRF Tandem_Repeat 231035 231306 345 + . . scaffold1445 TRF Tandem_Repeat 231036 231306 299 + . . scaffold1445 GLEAN promoter 231779 232778 0.644744 - . ID=CGI_10010374; scaffold1445 TRF Tandem_Repeat 233756 233797 66 + . . scaffold1445 TRF Tandem_Repeat 234394 234426 50 + . . scaffold1445 TRF Tandem_Repeat 235637 235891 221 + . . scaffold1445 TRF Tandem_Repeat 235637 235887 342 + . . scaffold1445 TRF Tandem_Repeat 235929 236217 154 + . . scaffold1445 TRF Tandem_Repeat 236474 236530 62 + . . scaffold1445 GLEAN mRNA 238181 249253 0.990769 - . ID=CGI_10010375; scaffold1445 TRF Tandem_Repeat 240417 240454 76 + . . scaffold1445 TRF Tandem_Repeat 244558 244619 124 + . . scaffold1445 TRF Tandem_Repeat 246175 246228 99 + . . scaffold1445 TRF Tandem_Repeat 246368 246407 80 + . . scaffold1445 TRF Tandem_Repeat 247113 247144 64 + . . scaffold1445 WUBlastX LTR_Gypsy 249077 249379 31 - . . scaffold1445 GLEAN promoter 249254 250253 0.990769 - . ID=CGI_10010375; scaffold1445 TRF Tandem_Repeat 259399 259538 110 + . . scaffold1445 GLEAN promoter 259400 260399 0.998624 + . ID=CGI_10010376; scaffold1445 TRF Tandem_Repeat 259448 259741 196 + . . scaffold1445 TRF Tandem_Repeat 260281 260326 92 + . . scaffold1445 GLEAN mRNA 260400 261065 0.998624 + . ID=CGI_10010376; scaffold1446 GLEAN promoter 1 985 0.999998 + . ID=CGI_10002373; scaffold1446 GLEAN mRNA 986 1830 0.999998 + . ID=CGI_10002373; scaffold1446 GLEAN promoter 9991 10990 1 + . ID=CGI_10002374; scaffold1446 GLEAN mRNA 10991 14090 1 + . ID=CGI_10002374; scaffold1446 GLEAN promoter 16567 17566 0.593391 + . ID=CGI_10002375; scaffold1446 GLEAN mRNA 17567 26017 0.593391 + . ID=CGI_10002375; scaffold1446 GLEAN promoter 28028 29027 0.999068 + . ID=CGI_10002376; scaffold1446 GLEAN mRNA 29028 30164 0.999068 + . ID=CGI_10002376; scaffold1446 GLEAN mRNA 39022 44126 1 - . ID=CGI_10002377; scaffold1446 GLEAN promoter 44127 44225 1 - . ID=CGI_10002377; scaffold1447 TRF Tandem_Repeat 9142 9177 72 + . . scaffold1447 GLEAN promoter 10511 11510 0.469757 + . ID=CGI_10013812; scaffold1447 GLEAN mRNA 11511 50547 0.469757 + . ID=CGI_10013812; scaffold1447 TRF Tandem_Repeat 22426 22456 62 + . . scaffold1447 TRF Tandem_Repeat 24268 24346 131 + . . scaffold1447 TRF Tandem_Repeat 27395 27436 50 + . . scaffold1447 TRF Tandem_Repeat 37139 37188 100 + . . scaffold1447 TRF Tandem_Repeat 37916 37990 55 + . . scaffold1447 TRF Tandem_Repeat 39095 39129 70 + . . scaffold1447 TRF Tandem_Repeat 39241 39308 136 + . . scaffold1447 TRF Tandem_Repeat 39704 39771 136 + . . scaffold1447 TRF Tandem_Repeat 39940 39979 64 + . . scaffold1447 TRF Tandem_Repeat 40587 40764 73 + . . scaffold1447 TRF Tandem_Repeat 44452 44580 63 + . . scaffold1447 WUBlastX LINE_Penelope 48875 49267 64 - . . scaffold1447 GLEAN mRNA 53118 54164 0.64854 - . ID=CGI_10013813; scaffold1447 GLEAN promoter 54165 55164 0.64854 - . ID=CGI_10013813; scaffold1447 TRF Tandem_Repeat 56790 56827 76 + . . scaffold1447 GLEAN mRNA 60792 62099 0.734553 - . ID=CGI_10013814; scaffold1447 GLEAN promoter 62100 63099 0.734553 - . ID=CGI_10013814; scaffold1447 WUBlastX LINE_RTE-X 63113 63328 46 - . . scaffold1447 WUBlastX LINE_RTE-X 63206 63415 62 - . . scaffold1447 WUBlastX LINE_RTE-X 63792 63887 38 - . . scaffold1447 WUBlastX LINE_RTE-X 63795 63911 37 - . . scaffold1447 TRF Tandem_Repeat 66332 66371 80 + . . scaffold1447 GLEAN mRNA 70744 72405 0.531611 - . ID=CGI_10013816; scaffold1447 GLEAN promoter 72406 73405 0.531611 - . ID=CGI_10013816; scaffold1447 WUBlastX LINE_RTE-X 97030 97158 34 - . . scaffold1447 WUBlastX LINE_RTE-X 97166 97312 61 - . . scaffold1447 WUBlastX LINE_RTE-X 97449 97571 39 - . . scaffold1447 GLEAN mRNA 98553 105907 0.92535 - . ID=CGI_10013817; scaffold1447 WUBlastX DNA_TcMar-Tc1 99729 100286 300 - . . scaffold1447 WUBlastX DNA_TcMar-Tc1 100285 100683 42 - . . scaffold1447 TRF Tandem_Repeat 102515 102572 66 + . . scaffold1447 GLEAN promoter 105908 106907 0.92535 - . ID=CGI_10013817; scaffold1447 TRF Tandem_Repeat 107046 107119 148 + . . scaffold1447 GLEAN mRNA 145066 154561 0.838589 - . ID=CGI_10013818; scaffold1447 WUBlastX LINE_RTE-X 149647 150003 32 - . . scaffold1447 WUBlastX LINE_RTE-X 149743 150027 115 - . . scaffold1447 WUBlastX DNA_TcMar-Tc1 152966 153091 63 - . . scaffold1447 WUBlastX DNA_TcMar-Tc1 153109 153432 93 - . . scaffold1447 WUBlastX DNA_TcMar-Tc1 153118 153276 100 - . . scaffold1447 GLEAN promoter 154029 155028 1 + . ID=CGI_10013819; scaffold1447 GLEAN promoter 154562 155561 0.838589 - . ID=CGI_10013818; scaffold1447 GLEAN mRNA 155029 161592 1 + . ID=CGI_10013819; scaffold1447 GLEAN promoter 163821 164820 0.999674 + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 163982 164127 107 + . . scaffold1447 TRF Tandem_Repeat 164154 164336 161 + . . scaffold1447 GLEAN mRNA 164821 184696 0.999674 + . ID=CGI_10013820; scaffold1447 TRF Tandem_Repeat 170572 170768 155 + . . scaffold1447 TRF Tandem_Repeat 172875 172907 66 + . . scaffold1447 TRF Tandem_Repeat 175280 175341 83 + . . scaffold1447 TRF Tandem_Repeat 175387 176172 908 + . . scaffold1447 TRF Tandem_Repeat 177005 178376 1944 + . . scaffold1447 TRF Tandem_Repeat 180469 180510 68 + . . scaffold1447 TRF Tandem_Repeat 195563 195674 152 + . . scaffold1447 GLEAN mRNA 197617 199299 0.996199 - . ID=CGI_10013821; scaffold1447 GLEAN promoter 199300 200299 0.996199 - . ID=CGI_10013821; scaffold1447 GLEAN mRNA 205047 206756 0.989476 - . ID=CGI_10013822; scaffold1447 GLEAN promoter 206757 207756 0.989476 - . ID=CGI_10013822; scaffold1447 TRF Tandem_Repeat 226174 226229 89 + . . scaffold1447 GLEAN mRNA 226443 227756 0.998504 - . ID=CGI_10013823; scaffold1447 GLEAN promoter 227757 228756 0.998504 - . ID=CGI_10013823; scaffold1447 TRF Tandem_Repeat 228414 228507 107 + . . scaffold1447 TRF Tandem_Repeat 229059 229154 84 + . . scaffold1447 GLEAN mRNA 232697 238403 0.517291 - . ID=CGI_10013824; scaffold1447 GLEAN promoter 238404 239403 0.517291 - . ID=CGI_10013824; scaffold1447 GLEAN mRNA 246804 247481 0.999925 - . ID=CGI_10013825; scaffold1447 GLEAN promoter 247482 248481 0.999925 - . ID=CGI_10013825; scaffold1447 GLEAN mRNA 247562 248137 0.776781 - . ID=CGI_10013826; scaffold1447 GLEAN promoter 248138 249137 0.776781 - . ID=CGI_10013826; scaffold1447 GLEAN mRNA 252480 261580 0.612003 - . ID=CGI_10013827; scaffold1447 GLEAN promoter 261460 262459 1 + . ID=CGI_10013828; scaffold1447 GLEAN promoter 261581 262580 0.612003 - . ID=CGI_10013827; scaffold1447 GLEAN mRNA 262460 275511 1 + . ID=CGI_10013828; scaffold1447 TRF Tandem_Repeat 265844 265898 110 + . . scaffold1447 TRF Tandem_Repeat 269396 269455 113 + . . scaffold1447 TRF Tandem_Repeat 279788 279989 105 + . . scaffold1447 TRF Tandem_Repeat 284307 285756 793 + . . scaffold1447 GLEAN mRNA 287722 296132 0.998487 - . ID=CGI_10013829; scaffold1447 GLEAN promoter 296133 297132 0.998487 - . ID=CGI_10013829; scaffold1447 GLEAN mRNA 300093 324572 0.937847 - . ID=CGI_10013830; scaffold1447 TRF Tandem_Repeat 304257 304317 79 + . . scaffold1447 GLEAN promoter 324573 325572 0.937847 - . ID=CGI_10013830; scaffold1447 WUBlastX DNA_TcMar-Tc1 329818 330864 165 + . . scaffold1447 WUBlastX DNA_TcMar-Tc1 330019 330864 310 + . . scaffold1447 TRF Tandem_Repeat 365844 365881 76 + . . scaffold1447 WUBlastX LINE_RTE-BovB 368912 368995 43 - . . scaffold1447 WUBlastX LINE_RTE-BovB 369006 369764 191 - . . scaffold1448 GLEAN promoter 1 630 0.999948 + . ID=CGI_10011852; scaffold1448 GLEAN mRNA 631 18510 0.999948 + . ID=CGI_10011852; scaffold1448 WUBlastX LINE_RTE-X 3545 3646 27 - . . scaffold1448 WUBlastX LINE_RTE-X 3661 4110 229 - . . scaffold1448 WUBlastX LINE_RTE-X 4050 4229 102 - . . scaffold1448 WUBlastX LINE_RTE-X 4107 4262 99 - . . scaffold1448 WUBlastX LINE_RTE-X 4107 4319 91 - . . scaffold1448 TRF Tandem_Repeat 10672 10728 114 + . . scaffold1448 TRF Tandem_Repeat 22426 22466 82 + . . scaffold1448 TRF Tandem_Repeat 27818 27901 89 + . . scaffold1448 GLEAN mRNA 28289 31614 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 28861 29199 131 - . . scaffold1448 WUBlastX LTR_Ngaro 29181 29684 161 - . . scaffold1448 WUBlastX LTR_Ngaro 29301 29786 116 - . . scaffold1448 WUBlastX LTR_Ngaro 29763 29834 45 - . . scaffold1448 WUBlastX LTR_Ngaro 29798 30106 66 - . . scaffold1448 WUBlastX LTR_Ngaro 29855 30106 81 - . . scaffold1448 WUBlastX LTR_Ngaro 30141 30833 441 - . . scaffold1448 WUBlastX LTR_Ngaro 30819 31421 470 - . . scaffold1448 WUBlastX LTR_Ngaro 31489 31899 60 - . . scaffold1448 GLEAN promoter 31615 32614 0.624176 - . ID=CGI_10011853; scaffold1448 WUBlastX LTR_Ngaro 31684 31899 127 - . . scaffold1448 WUBlastX LTR_Ngaro 31898 32194 31 - . . scaffold1448 WUBlastX LTR_Ngaro 31934 32110 41 - . . scaffold1448 TRF Tandem_Repeat 47560 47613 108 + . . scaffold1448 TRF Tandem_Repeat 53547 53606 120 + . . scaffold1448 TRF Tandem_Repeat 53979 54010 64 + . . scaffold1448 TRF Tandem_Repeat 59623 59685 126 + . . scaffold1448 TRF Tandem_Repeat 69030 69748 787 + . . scaffold1448 TRF Tandem_Repeat 100960 101020 122 + . . scaffold1448 WUBlastX LINE_RTE-BovB 107205 107564 49 - . . scaffold1448 WUBlastX LINE_RTE-BovB 107301 107969 165 - . . scaffold1448 TRF Tandem_Repeat 107680 107719 55 + . . scaffold1448 WUBlastX LINE_RTE-BovB 107942 108175 174 - . . scaffold1448 WUBlastX LINE_RTE-BovB 107942 108334 125 - . . scaffold1448 WUBlastX LINE_RTE 107948 108244 128 - . . scaffold1448 WUBlastX LINE_RTE-BovB 109139 109213 24 - . . scaffold1448 WUBlastX LINE_RTE-RTE 111265 111600 23 - . . scaffold1448 WUBlastX LINE_RTE-BovB 111322 111621 196 - . . scaffold1448 WUBlastX LINE_RTE-BovB 111629 111781 51 - . . scaffold1448 WUBlastX LINE_RTE-BovB 111653 112312 274 - . . scaffold1448 WUBlastX LINE_RTE-BovB 111656 112567 266 - . . scaffold1448 WUBlastX LINE_RTE-BovB 112360 113091 116 - . . scaffold1448 WUBlastX LINE_RTE-BovB 112816 113091 153 - . . scaffold1448 WUBlastX LINE_RTE-BovB 112846 113154 100 - . . scaffold1448 TRF Tandem_Repeat 145249 145307 73 + . . scaffold1448 TRF Tandem_Repeat 145254 145307 90 + . . scaffold1448 TRF Tandem_Repeat 145258 145304 67 + . . scaffold1448 TRF Tandem_Repeat 146809 146860 104 + . . scaffold1448 GLEAN promoter 149330 150329 0.442069 + . ID=CGI_10011854; scaffold1448 GLEAN mRNA 150330 154216 0.442069 + . ID=CGI_10011854; scaffold1448 WUBlastX LTR_Gypsy 155258 155980 21 + . . scaffold1448 WUBlastX LTR_Gypsy 155378 156295 75 + . . scaffold1448 WUBlastX LTR_Gypsy 155570 155989 79 + . . scaffold1448 WUBlastX LTR_Gypsy-Cigr 155672 156277 151 + . . scaffold1448 WUBlastX LINE_Penelope 159155 159298 42 + . . scaffold1448 TRF Tandem_Repeat 160365 161536 1446 + . . scaffold1448 TRF Tandem_Repeat 174341 174384 70 + . . scaffold1448 TRF Tandem_Repeat 174386 174425 80 + . . scaffold1448 TRF Tandem_Repeat 175483 175520 58 + . . scaffold1448 TRF Tandem_Repeat 181218 181256 51 + . . scaffold1448 TRF Tandem_Repeat 181712 181737 52 + . . scaffold1448 TRF Tandem_Repeat 186691 186996 194 + . . scaffold1448 TRF Tandem_Repeat 186695 186913 79 + . . scaffold1448 TRF Tandem_Repeat 186813 186998 189 + . . scaffold1448 GLEAN mRNA 190467 190820 0.990763 - . ID=CGI_10011855; scaffold1448 GLEAN promoter 190821 191820 0.990763 - . ID=CGI_10011855; scaffold1448 WUBlastX LTR_Copia 191408 191605 22 - . . scaffold1448 WUBlastX LTR_Gypsy 191447 191602 22 - . . scaffold1448 WUBlastX LTR_Gypsy 191504 191620 25 - . . scaffold1448 WUBlastX LTR_Gypsy 191636 195115 2993 - . . scaffold1448 WUBlastX LTR_Gypsy 195126 195497 64 - . . scaffold1448 WUBlastX LTR_Gypsy 195126 195335 93 - . . scaffold1448 WUBlastX LTR_Gypsy 195546 195761 27 - . . scaffold1448 WUBlastX LTR_Gypsy 195603 195899 201 - . . scaffold1448 WUBlastX LTR_Gypsy 195868 196104 25 - . . scaffold1448 WUBlastX LTR_Gypsy 195949 196191 104 - . . scaffold1448 WUBlastX LINE_L2 198970 199029 20 + . . scaffold1448 WUBlastX LINE_RTE-X 199859 201151 635 + . . scaffold1448 WUBlastX LINE_RTE-X 201172 201363 43 + . . scaffold1448 GLEAN promoter 204659 205658 0.97529 + . ID=CGI_10011856; scaffold1448 GLEAN mRNA 205659 222787 0.97529 + . ID=CGI_10011856; scaffold1448 TRF Tandem_Repeat 206662 206697 54 + . . scaffold1448 TRF Tandem_Repeat 208008 208054 94 + . . scaffold1448 TRF Tandem_Repeat 210062 210791 1322 + . . scaffold1448 WUBlastX LTR_Pao 217034 219055 675 + . . scaffold1448 WUBlastX LTR_Pao 217442 219064 712 + . . scaffold1448 WUBlastX LTR_Pao 220879 220986 28 + . . scaffold1448 WUBlastX LTR_Pao 220930 222450 906 + . . scaffold1448 TRF Tandem_Repeat 227158 227251 70 + . . scaffold1448 TRF Tandem_Repeat 227175 227313 102 + . . scaffold1448 GLEAN promoter 238874 239873 0.999946 + . ID=CGI_10011857; scaffold1448 GLEAN mRNA 239874 240499 0.999946 + . ID=CGI_10011857; scaffold1448 WUBlastX LINE_L2 241075 241788 89 + . . scaffold1448 WUBlastX LINE_L1 241207 241857 189 + . . scaffold1448 WUBlastX LINE_L2 241979 242263 61 + . . scaffold1448 WUBlastX LINE_RTE-X 242030 245098 925 + . . scaffold1448 WUBlastX LINE_RTE-X 245106 245294 98 + . . scaffold1448 WUBlastX LINE_RTE-X 245136 245426 113 + . . scaffold1448 TRF Tandem_Repeat 245455 245514 57 + . . scaffold1448 GLEAN mRNA 246360 248515 0.756332 - . ID=CGI_10011858; scaffold1448 GLEAN promoter 248516 249515 0.756332 - . ID=CGI_10011858; scaffold1448 TRF Tandem_Repeat 248947 248977 62 + . . scaffold1448 TRF Tandem_Repeat 255576 255629 108 + . . scaffold1448 TRF Tandem_Repeat 262657 262695 60 + . . scaffold1448 WUBlastX LINE_RTE-X 263182 263355 31 - . . scaffold1448 WUBlastX LINE_RTE-X 263278 263364 33 - . . scaffold1448 WUBlastX LINE_RTE-X 263343 263606 45 - . . scaffold1448 WUBlastX LINE_RTE-X 263385 263849 30 - . . scaffold1448 WUBlastX LINE_RTE-X 263714 264202 78 - . . scaffold1448 WUBlastX LINE_RTE-X 263789 264217 131 - . . scaffold1448 WUBlastX LINE_RTE-X 263798 264136 150 - . . scaffold1448 WUBlastX LINE_RTE-X 264198 264356 67 - . . scaffold1448 WUBlastX LINE_RTE-X 264198 264332 96 - . . scaffold1448 WUBlastX LINE_CR1 264198 264392 29 - . . scaffold1448 WUBlastX LINE_RTE-X 264400 265254 340 - . . scaffold1448 WUBlastX LINE_L1 265951 266013 21 - . . scaffold1448 GLEAN mRNA 268542 268915 0.943479 - . ID=CGI_10011859; scaffold1448 WUBlastX DNA_Kolobok-Hyd 268778 268972 41 - . . scaffold1448 GLEAN promoter 268916 269915 0.943479 - . ID=CGI_10011859; scaffold1448 GLEAN mRNA 269171 271647 0.740287 - . ID=CGI_10011860; scaffold1448 WUBlastX DNA_IS4EU 269216 269920 80 - . . scaffold1448 WUBlastX DNA_Kolobok-Hyd 269630 270040 23 - . . scaffold1448 GLEAN promoter 270824 271823 0.999637 + . ID=CGI_10011861; scaffold1448 GLEAN promoter 271648 272647 0.740287 - . ID=CGI_10011860; scaffold1448 GLEAN mRNA 271824 273564 0.999637 + . ID=CGI_10011861; scaffold1448 WUBlastX LINE_CR1-L2 274160 274303 52 + . . scaffold1448 WUBlastX LINE_CR1-L2 274312 274470 30 + . . scaffold1448 WUBlastX LINE_CR1-L2 275302 275385 33 - . . scaffold1448 WUBlastX LINE_CR1 275325 275654 116 - . . scaffold1448 WUBlastX LINE_CR1-L2 275412 275654 200 - . . scaffold1448 WUBlastX LINE_CR1-L2 275639 276253 188 - . . scaffold1448 WUBlastX LINE_L2 276294 276371 23 - . . scaffold1448 WUBlastX LINE_CR1-L2 276883 277041 30 - . . scaffold1448 WUBlastX LINE_CR1-L2 277050 277193 52 - . . scaffold1448 WUBlastX LINE_L2 277190 277435 21 - . . scaffold1448 WUBlastX LINE_L2 277913 278320 118 - . . scaffold1448 TRF Tandem_Repeat 285028 285601 551 + . . scaffold1448 TRF Tandem_Repeat 286379 286658 294 + . . scaffold1448 TRF Tandem_Repeat 286665 287718 653 + . . scaffold1448 TRF Tandem_Repeat 286665 287708 495 + . . scaffold1448 TRF Tandem_Repeat 286665 287722 351 + . . scaffold1448 TRF Tandem_Repeat 287733 288072 244 + . . scaffold1448 WUBlastX DNA_IS4EU 290050 290712 36 + . . scaffold1448 WUBlastX DNA_Kolobok-Hyd 290831 291028 20 + . . scaffold1448 TRF Tandem_Repeat 296449 296794 368 + . . scaffold1448 TRF Tandem_Repeat 296449 296794 435 + . . scaffold1448 TRF Tandem_Repeat 296449 296794 368 + . . scaffold1448 TRF Tandem_Repeat 297460 297744 306 + . . scaffold1448 TRF Tandem_Repeat 297460 297742 298 + . . scaffold1448 TRF Tandem_Repeat 297468 297744 296 + . . scaffold1449 GLEAN mRNA 1629 7199 0.544852 - . ID=CGI_10010687; scaffold1449 GLEAN promoter 7200 8199 0.544852 - . ID=CGI_10010687; scaffold1449 GLEAN mRNA 10356 12457 0.999676 - . ID=CGI_10010688; scaffold1449 GLEAN promoter 12458 13457 0.999676 - . ID=CGI_10010688; scaffold1449 WUBlastX LINE_L2 19237 19404 79 + . . scaffold1449 WUBlastX LINE_L2 19422 19535 20 + . . scaffold1449 TRF Tandem_Repeat 20280 20327 69 + . . scaffold1449 TRF Tandem_Repeat 20280 20319 53 + . . scaffold1449 WUBlastX LINE_Penelope 24116 24430 32 + . . scaffold1449 WUBlastX LINE_Penelope 24125 24382 65 + . . scaffold1449 WUBlastX DNA_Crypton 27089 27277 46 + . . scaffold1449 WUBlastX DNA_Crypton 27371 27901 93 + . . scaffold1449 TRF Tandem_Repeat 32016 32285 235 + . . scaffold1449 TRF Tandem_Repeat 32017 32285 310 + . . scaffold1449 TRF Tandem_Repeat 32037 32285 215 + . . scaffold1449 TRF Tandem_Repeat 32701 32933 285 + . . scaffold1449 TRF Tandem_Repeat 32702 32913 293 + . . scaffold1449 GLEAN mRNA 33105 34570 0.878492 - . ID=CGI_10010689; scaffold1449 GLEAN promoter 34571 35570 0.878492 - . ID=CGI_10010689; scaffold1449 WUBlastX LINE_RTE-BovB 42454 42930 90 - . . scaffold1449 WUBlastX LINE_RTE-BovB 42569 43318 48 - . . scaffold1449 WUBlastX LINE_RTE-BovB 43130 43318 101 - . . scaffold1449 TRF Tandem_Repeat 43382 43430 64 + . . scaffold1449 TRF Tandem_Repeat 43383 43428 58 + . . scaffold1449 TRF Tandem_Repeat 43389 43440 68 + . . scaffold1449 WUBlastX LINE_RTE-BovB 45948 46133 73 - . . scaffold1449 WUBlastX LINE_RTE-BovB 45948 46166 67 - . . scaffold1449 TRF Tandem_Repeat 47467 47521 56 + . . scaffold1449 TRF Tandem_Repeat 47467 47524 64 + . . scaffold1449 TRF Tandem_Repeat 47469 47498 53 + . . scaffold1449 GLEAN mRNA 47527 52497 0.806919 - . ID=CGI_10010690; scaffold1449 WUBlastX DNA_TcMar-Tc1 51682 51963 59 - . . scaffold1449 WUBlastX DNA_TcMar-Tc1 51700 51921 97 - . . scaffold1449 WUBlastX DNA_TcMar-Tc1 51718 52119 23 - . . scaffold1449 GLEAN promoter 52498 53497 0.806919 - . ID=CGI_10010690; scaffold1449 TRF Tandem_Repeat 53289 53353 123 + . . scaffold1449 WUBlastX LINE_L1 64393 64539 37 + . . scaffold1449 WUBlastX LINE_CR1 64522 65196 86 + . . scaffold1449 WUBlastX LINE_RTE-X 64660 65211 181 + . . scaffold1449 WUBlastX LINE_RTE-X 65171 65992 414 + . . scaffold1449 WUBlastX LINE_CR1 66522 66818 20 + . . scaffold1449 WUBlastX LINE_RTE-X 66597 66839 97 + . . scaffold1449 GLEAN promoter 66747 67746 0.84051 + . ID=CGI_10010691; scaffold1449 WUBlastX LINE_RTE-X 66834 67121 81 + . . scaffold1449 WUBlastX LINE_RTE-X 66906 67184 72 + . . scaffold1449 WUBlastX LINE_RTE-X 66909 67130 113 + . . scaffold1449 GLEAN mRNA 67747 83098 0.84051 + . ID=CGI_10010691; scaffold1449 WUBlastX DNA_TcMar-Tc1 72301 72957 387 - . . scaffold1449 WUBlastX DNA_TcMar-Tc1 72966 73313 55 - . . scaffold1449 WUBlastX DNA_TcMar-Tc1 73062 73295 78 - . . scaffold1449 WUBlastX DNA_TcMar-Marin 73191 73343 35 - . . scaffold1449 TRF Tandem_Repeat 75560 75606 67 + . . scaffold1449 TRF Tandem_Repeat 83946 84033 149 + . . scaffold1449 GLEAN promoter 89245 90244 0.999579 + . ID=CGI_10010693; scaffold1449 TRF Tandem_Repeat 89691 89730 80 + . . scaffold1449 GLEAN mRNA 90245 92240 0.999579 + . ID=CGI_10010693; scaffold1449 TRF Tandem_Repeat 159685 160309 625 + . . scaffold1449 TRF Tandem_Repeat 159685 160301 688 + . . scaffold1449 WUBlastX LINE_L2 171564 171872 54 - . . scaffold1449 WUBlastX LINE_L2 171618 171977 57 - . . scaffold1449 WUBlastX RC_Helitron 171699 173051 232 - . . scaffold1449 WUBlastX RC_Helitron 172005 173000 259 - . . scaffold1449 WUBlastX DNA_TcMar-Marin 173451 174470 610 - . . scaffold1449 WUBlastX RC_Helitron 174865 176157 398 - . . scaffold1449 WUBlastX RC_Helitron 176154 176501 145 - . . scaffold1449 WUBlastX DNA_Helitron 176166 176585 67 - . . scaffold1449 WUBlastX RC_Helitron 177227 177484 86 - . . scaffold1449 WUBlastX RC_Helitron 177709 178599 435 - . . scaffold1449 WUBlastX DNA_Helitron 178593 178718 37 - . . scaffold1449 WUBlastX RC_Helitron 178913 179056 33 - . . scaffold1449 GLEAN mRNA 182022 201778 0.821744 - . ID=CGI_10010695; scaffold1449 TRF Tandem_Repeat 184216 184293 138 + . . scaffold1449 TRF Tandem_Repeat 184216 184293 111 + . . scaffold1449 TRF Tandem_Repeat 185118 185175 107 + . . scaffold1449 TRF Tandem_Repeat 186471 186538 91 + . . scaffold1449 TRF Tandem_Repeat 186476 186537 79 + . . scaffold1449 GLEAN promoter 201779 202778 0.821744 - . ID=CGI_10010695; scaffold1449 GLEAN promoter 202791 203790 0.776794 + . ID=CGI_10010696; scaffold1449 WUBlastX DNA_Kolobok-Hyd 203488 204075 52 + . . scaffold1449 GLEAN mRNA 203791 204087 0.776794 + . ID=CGI_10010696; scaffold1449 GLEAN promoter 213129 214128 0.618241 + . ID=CGI_10010697; scaffold1449 GLEAN mRNA 214129 214314 0.618241 + . ID=CGI_10010697; scaffold1449 TRF Tandem_Repeat 222607 222644 55 + . . scaffold1449 TRF Tandem_Repeat 227707 227763 78 + . . scaffold1449 WUBlastX LINE_L1 236063 236272 55 + . . scaffold1449 WUBlastX LINE_L1-Tx1 236099 236272 115 + . . scaffold1449 WUBlastX LINE_L1-Tx1 246916 248175 657 + . . scaffold1449 GLEAN promoter 249799 250798 0.999676 + . ID=CGI_10010699; scaffold1449 TRF Tandem_Repeat 250415 250441 54 + . . scaffold1449 GLEAN mRNA 250799 255455 0.999676 + . ID=CGI_10010699; scaffold1449 TRF Tandem_Repeat 261665 261696 64 + . . scaffold1449 TRF Tandem_Repeat 265302 266084 1086 + . . scaffold145 TRF Tandem_Repeat 996 1066 142 + . . scaffold145 GLEAN mRNA 8342 9043 0.980096 - . ID=CGI_10026545; scaffold145 GLEAN promoter 9044 10043 0.980096 - . ID=CGI_10026545; scaffold145 WUBlastX DNA_Harbinger 12305 12571 128 - . . scaffold145 WUBlastX DNA_Harbinger 12636 12758 76 - . . scaffold145 WUBlastX DNA_Harbinger 12824 12958 60 - . . scaffold145 TRF Tandem_Repeat 13755 13799 90 + . . scaffold145 TRF Tandem_Repeat 14591 14626 72 + . . scaffold145 TRF Tandem_Repeat 14626 14654 58 + . . scaffold145 TRF Tandem_Repeat 15820 16014 257 + . . scaffold145 TRF Tandem_Repeat 17743 18278 567 + . . scaffold145 TRF Tandem_Repeat 17743 18278 628 + . . scaffold145 TRF Tandem_Repeat 17750 18278 510 + . . scaffold145 TRF Tandem_Repeat 25138 25162 50 + . . scaffold145 TRF Tandem_Repeat 30883 30980 196 + . . scaffold145 GLEAN promoter 31990 32989 0.999624 + . ID=CGI_10026546; scaffold145 GLEAN mRNA 32990 63613 0.999624 + . ID=CGI_10026546; scaffold145 TRF Tandem_Repeat 37930 37964 70 + . . scaffold145 TRF Tandem_Repeat 41377 41415 69 + . . scaffold145 TRF Tandem_Repeat 43047 43095 98 + . . scaffold145 TRF Tandem_Repeat 45007 45033 54 + . . scaffold145 TRF Tandem_Repeat 56735 56776 57 + . . scaffold145 TRF Tandem_Repeat 61700 61736 67 + . . scaffold145 GLEAN promoter 75317 76316 0.771672 + . ID=CGI_10026547; scaffold145 GLEAN mRNA 76317 84578 0.771672 + . ID=CGI_10026547; scaffold145 TRF Tandem_Repeat 79095 79204 132 + . . scaffold145 WUBlastX LINE_Penelope 87707 88666 221 - . . scaffold145 WUBlastX LINE_Penelope 88256 88771 53 - . . scaffold145 WUBlastX LINE_Penelope 88755 88925 105 - . . scaffold145 WUBlastX LINE_Penelope 88761 88964 70 - . . scaffold145 WUBlastX LINE_Penelope 88767 89012 65 - . . scaffold145 WUBlastX LINE_Penelope 88779 88922 109 - . . scaffold145 WUBlastX LINE_Penelope 88945 89100 34 - . . scaffold145 WUBlastX LINE_Penelope 88948 89067 36 - . . scaffold145 WUBlastX LINE_Penelope 88948 89043 43 - . . scaffold145 WUBlastX LINE_Penelope 88954 89028 50 - . . scaffold145 WUBlastX LINE_Penelope 89424 90017 95 - . . scaffold145 WUBlastX LINE_Penelope 89526 90008 184 - . . scaffold145 WUBlastX LINE_Penelope 90578 90733 37 - . . scaffold145 WUBlastX LINE_Penelope 90620 90733 47 - . . scaffold145 WUBlastX LINE_Penelope 90730 91077 71 - . . scaffold145 WUBlastX LINE_Penelope 92124 92420 56 - . . scaffold145 WUBlastX LINE_Penelope 92205 92417 62 - . . scaffold145 WUBlastX LINE_Penelope 92452 93051 159 - . . scaffold145 TRF Tandem_Repeat 93372 93628 218 + . . scaffold145 TRF Tandem_Repeat 93712 93803 69 + . . scaffold145 TRF Tandem_Repeat 102607 103449 1221 + . . scaffold145 WUBlastX LTR_ERV1 104564 105400 152 - . . scaffold145 WUBlastX LTR_Gypsy 104744 106642 1436 - . . scaffold145 WUBlastX LTR_Gypsy-Cigr 106629 107846 505 - . . scaffold145 WUBlastX LTR_Gypsy 107845 107943 47 - . . scaffold145 WUBlastX LTR_Gypsy 107848 107997 32 - . . scaffold145 WUBlastX LTR_Gypsy 107988 108527 28 - . . scaffold145 WUBlastX LTR_Gypsy-Cigr 108515 108829 110 - . . scaffold145 WUBlastX LTR_Gypsy 108832 109113 114 + . . scaffold145 WUBlastX LTR_Gypsy 108895 109083 149 + . . scaffold145 WUBlastX LTR_Gypsy 108937 109110 158 + . . scaffold145 WUBlastX LTR_Gypsy-Cigr 109086 109799 558 + . . scaffold145 WUBlastX LTR_Gypsy 109089 109955 353 + . . scaffold145 WUBlastX LTR_Gypsy-Cigr 109831 110412 209 + . . scaffold145 WUBlastX DNA_IS4EU 113431 113670 34 + . . scaffold145 WUBlastX DNA_NOF? 113756 114112 81 + . . scaffold145 WUBlastX LTR_Gypsy 115345 115440 22 + . . scaffold145 TRF Tandem_Repeat 116126 116181 58 + . . scaffold145 WUBlastX LTR_Gypsy-Cigr 116229 117395 525 + . . scaffold145 TRF Tandem_Repeat 121270 122237 1332 + . . scaffold145 TRF Tandem_Repeat 125942 125974 59 + . . scaffold145 TRF Tandem_Repeat 131039 131345 366 + . . scaffold145 WUBlastX LINE_RTE-BovB 131447 132493 617 - . . scaffold145 TRF Tandem_Repeat 132499 133089 735 + . . scaffold145 TRF Tandem_Repeat 132499 133089 583 + . . scaffold145 TRF Tandem_Repeat 132499 133061 433 + . . scaffold145 GLEAN promoter 144896 145895 1 + . ID=CGI_10026548; scaffold145 GLEAN promoter 145756 146755 0.910386 + . ID=CGI_10026549; scaffold145 GLEAN mRNA 145896 146093 1 + . ID=CGI_10026548; scaffold145 GLEAN mRNA 146756 152331 0.910386 + . ID=CGI_10026549; scaffold145 TRF Tandem_Repeat 157164 157264 188 + . . scaffold145 WUBlastX LINE_L2 157574 158776 873 + . . scaffold145 WUBlastX DNA_MuDR 160062 160361 99 - . . scaffold145 WUBlastX DNA_MuDR 160122 160667 218 - . . scaffold145 WUBlastX DNA_MuDR 160182 160787 169 - . . scaffold145 GLEAN promoter 160879 161878 0.999676 + . ID=CGI_10026550; scaffold145 GLEAN mRNA 161879 164736 0.999676 + . ID=CGI_10026550; scaffold145 GLEAN promoter 182779 183778 0.999113 + . ID=CGI_10026551; scaffold145 GLEAN mRNA 183779 198582 0.999113 + . ID=CGI_10026551; scaffold145 GLEAN promoter 201426 202425 0.997487 + . ID=CGI_10026552; scaffold145 GLEAN mRNA 202426 215737 0.997487 + . ID=CGI_10026552; scaffold145 TRF Tandem_Repeat 204796 204846 102 + . . scaffold145 TRF Tandem_Repeat 206509 206534 52 + . . scaffold145 TRF Tandem_Repeat 218826 219660 933 + . . scaffold145 WUBlastX LTR_Ngaro 219777 220445 206 - . . scaffold145 WUBlastX DNA_TcMar-Tc1 222666 222833 73 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 222799 223173 62 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 222914 223447 115 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 223097 223447 127 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 223157 223435 144 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 223157 223519 79 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 223479 223589 46 + . . scaffold145 TRF Tandem_Repeat 225751 225793 86 + . . scaffold145 TRF Tandem_Repeat 226118 226151 68 + . . scaffold145 TRF Tandem_Repeat 241442 241583 203 + . . scaffold145 TRF Tandem_Repeat 244415 244446 64 + . . scaffold145 TRF Tandem_Repeat 246036 246124 106 + . . scaffold145 TRF Tandem_Repeat 248267 249327 711 + . . scaffold145 TRF Tandem_Repeat 248585 249321 826 + . . scaffold145 TRF Tandem_Repeat 255752 255798 94 + . . scaffold145 GLEAN mRNA 256564 261144 0.995737 - . ID=CGI_10026553; scaffold145 GLEAN promoter 261145 262144 0.995737 - . ID=CGI_10026553; scaffold145 TRF Tandem_Repeat 266879 267681 974 + . . scaffold145 TRF Tandem_Repeat 267847 267909 63 + . . scaffold145 TRF Tandem_Repeat 267847 267909 90 + . . scaffold145 TRF Tandem_Repeat 267847 267900 72 + . . scaffold145 WUBlastX LTR_Gypsy 267916 268647 242 + . . scaffold145 WUBlastX LTR_Gypsy 268162 268716 248 + . . scaffold145 WUBlastX LTR_Gypsy 268165 268626 320 + . . scaffold145 WUBlastX LTR_Gypsy 268737 268964 53 + . . scaffold145 WUBlastX LTR_Gypsy 268842 268964 57 + . . scaffold145 WUBlastX LINE_CR1 292347 292499 71 + . . scaffold145 WUBlastX DNA_IS4EU 296161 296916 63 + . . scaffold145 WUBlastX DNA_IS4EU 296578 296982 63 + . . scaffold145 WUBlastX DNA_Kolobok-IS4 297154 297297 26 + . . scaffold145 TRF Tandem_Repeat 301925 303091 1047 + . . scaffold145 TRF Tandem_Repeat 305563 305589 54 + . . scaffold145 GLEAN mRNA 306921 326519 0.542969 - . ID=CGI_10026554; scaffold145 TRF Tandem_Repeat 317841 318291 301 + . . scaffold145 TRF Tandem_Repeat 317843 318291 207 + . . scaffold145 TRF Tandem_Repeat 318638 319278 603 + . . scaffold145 TRF Tandem_Repeat 318644 318765 140 + . . scaffold145 GLEAN promoter 326520 327519 0.542969 - . ID=CGI_10026554; scaffold145 TRF Tandem_Repeat 335032 335081 100 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 335350 335733 97 - . . scaffold145 WUBlastX DNA_TcMar-Tc1 335434 335625 100 - . . scaffold145 WUBlastX DNA_TcMar-Tc1 335485 336384 300 - . . scaffold145 TRF Tandem_Repeat 338461 338531 67 + . . scaffold145 GLEAN mRNA 348535 374993 0.998765 - . ID=CGI_10026555; scaffold145 TRF Tandem_Repeat 349014 349047 68 + . . scaffold145 TRF Tandem_Repeat 362995 363115 233 + . . scaffold145 TRF Tandem_Repeat 366150 366906 1119 + . . scaffold145 TRF Tandem_Repeat 370990 371123 76 + . . scaffold145 GLEAN promoter 374994 375993 0.998765 - . ID=CGI_10026555; scaffold145 GLEAN promoter 379231 380230 0.61414 + . ID=CGI_10026556; scaffold145 GLEAN mRNA 380231 413214 0.61414 + . ID=CGI_10026556; scaffold145 WUBlastX LINE_L1-Tx1 391820 392485 35 + . . scaffold145 TRF Tandem_Repeat 397673 397841 257 + . . scaffold145 GLEAN mRNA 417763 440555 0.648525 - . ID=CGI_10026557; scaffold145 TRF Tandem_Repeat 420307 420502 326 + . . scaffold145 TRF Tandem_Repeat 420564 421077 866 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 422330 422572 23 + . . scaffold145 WUBlastX DNA_TcMar-Tc1 422336 422539 31 + . . scaffold145 TRF Tandem_Repeat 437294 437338 90 + . . scaffold145 GLEAN promoter 440556 441555 0.648525 - . ID=CGI_10026557; scaffold145 TRF Tandem_Repeat 441171 441230 113 + . . scaffold145 GLEAN mRNA 449168 453980 0.891434 - . ID=CGI_10026558; scaffold145 TRF Tandem_Repeat 452251 452318 118 + . . scaffold145 TRF Tandem_Repeat 453156 453216 122 + . . scaffold145 GLEAN promoter 453981 454980 0.891434 - . ID=CGI_10026558; scaffold145 TRF Tandem_Repeat 454722 454770 53 + . . scaffold145 TRF Tandem_Repeat 464448 464502 110 + . . scaffold145 GLEAN promoter 474777 475776 0.999984 + . ID=CGI_10026559; scaffold145 GLEAN mRNA 475777 476382 0.999984 + . ID=CGI_10026559; scaffold145 TRF Tandem_Repeat 476621 476671 66 + . . scaffold145 TRF Tandem_Repeat 485918 485971 99 + . . scaffold145 TRF Tandem_Repeat 487427 487466 71 + . . scaffold145 TRF Tandem_Repeat 498235 498280 74 + . . scaffold145 TRF Tandem_Repeat 505161 505203 86 + . . scaffold145 WUBlastX LINE_L1-Tx1 508162 508566 153 - . . scaffold145 WUBlastX LINE_L1 508539 508922 80 - . . scaffold145 WUBlastX LINE_L1 508545 508775 92 - . . scaffold145 WUBlastX DNA_IS4EU 515423 516205 288 + . . scaffold145 WUBlastX DNA_IS4EU 516317 516547 63 - . . scaffold145 WUBlastX DNA_IS4EU 516326 516511 86 - . . scaffold145 WUBlastX DNA_Kolobok-IS4 516800 516871 33 - . . scaffold145 WUBlastX DNA_Kolobok-IS4 517147 517287 31 - . . scaffold145 WUBlastX DNA_Kolobok-IS4 517389 517484 31 - . . scaffold145 WUBlastX DNA_IS4EU 517404 517508 58 - . . scaffold145 TRF Tandem_Repeat 521635 521679 63 + . . scaffold145 WUBlastX DNA_Kolobok-IS4 533014 533205 40 - . . scaffold145 WUBlastX DNA_Kolobok-IS4 533014 533163 50 - . . scaffold145 TRF Tandem_Repeat 538300 538434 83 + . . scaffold145 TRF Tandem_Repeat 539261 539355 70 + . . scaffold145 TRF Tandem_Repeat 545763 545903 158 + . . scaffold145 TRF Tandem_Repeat 545764 545949 152 + . . scaffold145 TRF Tandem_Repeat 545767 545903 149 + . . scaffold145 TRF Tandem_Repeat 546578 546648 78 + . . scaffold145 TRF Tandem_Repeat 560433 560777 268 + . . scaffold145 WUBlastX DNA_Crypton 573399 573593 38 - . . scaffold145 WUBlastX LINE_RTE-BovB 586422 586562 54 - . . scaffold145 WUBlastX DNA_TcMar-Marin 594220 594663 56 - . . scaffold145 TRF Tandem_Repeat 602270 602442 253 + . . scaffold145 WUBlastX LTR_Gypsy 607325 607603 84 - . . scaffold145 WUBlastX LTR_Gypsy 607761 608063 46 + . . scaffold145 WUBlastX LTR_Gypsy 607872 608081 56 + . . scaffold145 WUBlastX LTR_Gypsy 608285 608647 23 + . . scaffold145 WUBlastX LTR_Gypsy 608464 609228 42 + . . scaffold145 WUBlastX LTR_Gypsy-Cigr 608589 609002 117 + . . scaffold145 WUBlastX LTR_Gypsy 608688 609002 132 + . . scaffold145 WUBlastX LTR_Gypsy 608776 609252 166 + . . scaffold145 WUBlastX LTR_Gypsy 608872 609252 187 + . . scaffold145 WUBlastX LTR_Gypsy 609254 609505 37 + . . scaffold145 WUBlastX LTR_Gypsy-Cigr 609263 609472 155 + . . scaffold145 TRF Tandem_Repeat 631341 631407 82 + . . scaffold145 TRF Tandem_Repeat 633766 633813 69 + . . scaffold145 TRF Tandem_Repeat 635051 635104 72 + . . scaffold145 GLEAN mRNA 640130 678599 0.569648 - . ID=CGI_10026560; scaffold145 WUBlastX DNA_Crypton 642490 642894 88 - . . scaffold145 WUBlastX DNA_Crypton 642933 643199 88 - . . scaffold145 WUBlastX DNA_TcMar-Fot1 647423 647659 153 + . . scaffold145 WUBlastX DNA_TcMar-Fot1 648857 649141 80 + . . scaffold145 WUBlastX DNA_TcMar-Fot1 649129 649461 66 + . . scaffold145 WUBlastX DNA_TcMar-Fot1 649168 649326 77 + . . scaffold145 WUBlastX DNA_TcMar-Fot1 649353 649658 218 + . . scaffold145 WUBlastX DNA_TcMar-Fot1 649658 650116 68 + . . scaffold145 WUBlastX DNA_TcMar-Fot1 649661 649957 72 + . . scaffold145 WUBlastX DNA_TcMar-Fot1 649664 649900 180 + . . scaffold145 WUBlastX DNA_TcMar-Fot1 649697 650233 39 + . . scaffold145 TRF Tandem_Repeat 670778 670824 67 + . . scaffold145 GLEAN promoter 678600 679599 0.569648 - . ID=CGI_10026560; scaffold145 GLEAN mRNA 679506 683548 0.999983 - . ID=CGI_10026561; scaffold145 GLEAN promoter 683549 684548 0.999983 - . ID=CGI_10026561; scaffold145 WUBlastX RC_Helitron 684078 684629 86 - . . scaffold145 WUBlastX LTR_Pao 685173 686000 119 + . . scaffold145 WUBlastX LTR_Pao 685539 687683 979 + . . scaffold145 WUBlastX LTR_Pao 687637 688089 249 + . . scaffold145 WUBlastX LTR_Pao 688095 688805 611 + . . scaffold145 WUBlastX LTR_Pao 688783 688962 34 + . . scaffold145 WUBlastX LTR_Pao 688783 688932 167 + . . scaffold145 TRF Tandem_Repeat 698204 698257 99 + . . scaffold145 TRF Tandem_Repeat 699188 699231 88 + . . scaffold145 TRF Tandem_Repeat 700865 700911 94 + . . scaffold145 GLEAN promoter 704507 705506 1 + . ID=CGI_10026562; scaffold145 GLEAN mRNA 705507 710842 1 + . ID=CGI_10026562; scaffold145 TRF Tandem_Repeat 720149 720306 289 + . . scaffold145 TRF Tandem_Repeat 720580 720666 69 + . . scaffold145 TRF Tandem_Repeat 720582 720668 80 + . . scaffold145 TRF Tandem_Repeat 721225 721858 1124 + . . scaffold145 TRF Tandem_Repeat 726701 726735 70 + . . scaffold145 GLEAN promoter 727202 728201 1 + . ID=CGI_10026563; scaffold145 GLEAN mRNA 728202 729636 1 + . ID=CGI_10026563; scaffold145 GLEAN mRNA 743217 743408 0.999371 - . ID=CGI_10026564; scaffold145 GLEAN promoter 743409 744408 0.999371 - . ID=CGI_10026564; scaffold145 TRF Tandem_Repeat 747404 747448 90 + . . scaffold145 TRF Tandem_Repeat 749827 749904 84 + . . scaffold145 TRF Tandem_Repeat 749827 749904 66 + . . scaffold145 TRF Tandem_Repeat 756527 756570 70 + . . scaffold145 TRF Tandem_Repeat 759244 759298 110 + . . scaffold145 TRF Tandem_Repeat 771844 771892 98 + . . scaffold145 GLEAN promoter 773679 774678 0.593353 + . ID=CGI_10026565; scaffold145 GLEAN mRNA 774679 782684 0.593353 + . ID=CGI_10026565; scaffold145 WUBlastX LTR_Gypsy 791786 792190 127 - . . scaffold145 WUBlastX LTR_Gypsy 791870 792208 285 - . . scaffold145 WUBlastX LTR_Gypsy 792219 793064 220 - . . scaffold145 WUBlastX LTR_Gypsy 792219 792665 241 - . . scaffold145 WUBlastX LTR_Gypsy-Gmr1 792219 792773 235 - . . scaffold145 TRF Tandem_Repeat 798241 798524 394 + . . scaffold145 WUBlastX LTR_Gypsy 799473 799541 23 + . . scaffold145 WUBlastX LTR_Gypsy 800297 800797 189 + . . scaffold145 WUBlastX LTR_Gypsy 800375 800797 286 + . . scaffold145 WUBlastX LTR_Gypsy 800706 801125 233 + . . scaffold145 WUBlastX LTR_Gypsy 800709 801266 133 + . . scaffold145 WUBlastX LTR_Gypsy 801135 801506 44 + . . scaffold145 WUBlastX LTR_Gypsy-Cigr 801272 801454 80 + . . scaffold145 WUBlastX LTR_Gypsy 801493 801603 32 + . . scaffold145 WUBlastX LTR_Gypsy-Cigr 801529 801630 41 + . . scaffold145 WUBlastX LTR_Gypsy 802282 802428 25 + . . scaffold145 WUBlastX DNA_PiggyBac 809981 810148 69 + . . scaffold145 TRF Tandem_Repeat 810845 810890 92 + . . scaffold145 WUBlastX DNA_PiggyBac 811152 811328 87 + . . scaffold145 WUBlastX DNA_PiggyBac 811182 811877 86 + . . scaffold145 WUBlastX DNA_PiggyBac 811194 811532 91 + . . scaffold145 WUBlastX DNA_PiggyBac 811668 811958 101 + . . scaffold145 GLEAN mRNA 832787 840125 0.97533 - . ID=CGI_10026566; scaffold145 WUBlastX LINE_L2 834833 835276 33 - . . scaffold145 GLEAN promoter 840126 841125 0.97533 - . ID=CGI_10026566; scaffold145 GLEAN promoter 844430 845429 0.515241 + . ID=CGI_10026567; scaffold145 GLEAN mRNA 845430 872287 0.515241 + . ID=CGI_10026567; scaffold145 TRF Tandem_Repeat 845652 845698 67 + . . scaffold145 TRF Tandem_Repeat 856774 857673 1710 + . . scaffold145 TRF Tandem_Repeat 858411 858674 510 + . . scaffold145 GLEAN mRNA 866189 876630 1 - . ID=CGI_10026568; scaffold145 TRF Tandem_Repeat 870241 871034 1408 + . . scaffold145 GLEAN promoter 876631 877630 1 - . ID=CGI_10026568; scaffold145 TRF Tandem_Repeat 898296 898326 62 + . . scaffold145 TRF Tandem_Repeat 898660 898690 62 + . . scaffold145 WUBlastX LTR_Gypsy 911970 912653 78 - . . scaffold145 WUBlastX LTR_Gypsy 912180 912635 101 - . . scaffold145 TRF Tandem_Repeat 923672 923743 81 + . . scaffold145 TRF Tandem_Repeat 943754 943806 88 + . . scaffold145 WUBlastX DNA_hAT-Tip100 955127 955456 85 - . . scaffold145 WUBlastX DNA_hAT-Tip100 955244 955477 168 - . . scaffold145 WUBlastX DNA_hAT-Tip100 955262 955546 58 - . . scaffold145 GLEAN promoter 958637 959636 0.612015 + . ID=CGI_10026569; scaffold145 GLEAN mRNA 959637 969232 0.612015 + . ID=CGI_10026569; scaffold145 TRF Tandem_Repeat 969502 969534 52 + . . scaffold145 GLEAN promoter 969674 970673 0.99924 + . ID=CGI_10026570; scaffold145 GLEAN mRNA 970674 975170 0.99924 + . ID=CGI_10026570; scaffold145 TRF Tandem_Repeat 971463 972088 906 + . . scaffold145 WUBlastX LINE_RTE-X 981377 981547 77 + . . scaffold145 WUBlastX LINE_RTE-X 981564 982364 97 + . . scaffold145 TRF Tandem_Repeat 995543 995593 102 + . . scaffold145 WUBlastX DNA_Kolobok 997065 997526 45 - . . scaffold145 TRF Tandem_Repeat 1000889 1000913 50 + . . scaffold145 TRF Tandem_Repeat 1030651 1030730 70 + . . scaffold145 WUBlastX LTR_Ngaro 1039780 1039899 22 - . . scaffold145 WUBlastX LTR_Ngaro 1039982 1040233 67 - . . scaffold145 WUBlastX LTR_Ngaro 1040048 1040233 76 - . . scaffold145 WUBlastX LTR_Ngaro 1040307 1040711 27 - . . scaffold145 WUBlastX LTR_Ngaro 1040331 1040663 98 - . . scaffold145 WUBlastX LTR_Ngaro 1052761 1053060 48 - . . scaffold145 WUBlastX LTR_Ngaro 1053238 1053441 26 - . . scaffold145 WUBlastX LTR_Ngaro 1053497 1053601 25 - . . scaffold145 WUBlastX LTR_Ngaro 1053728 1054009 88 - . . scaffold145 WUBlastX LTR_Ngaro 1054027 1054059 22 - . . scaffold145 WUBlastX LTR_Ngaro 1054092 1054721 67 - . . scaffold145 GLEAN promoter 1087845 1088844 0.306549 + . ID=CGI_10026571; scaffold145 GLEAN mRNA 1088845 1120119 0.306549 + . ID=CGI_10026571; scaffold145 TRF Tandem_Repeat 1105004 1105035 64 + . . scaffold145 TRF Tandem_Repeat 1116828 1116890 83 + . . scaffold145 GLEAN mRNA 1119089 1121050 1 - . ID=CGI_10026572; scaffold145 GLEAN promoter 1120514 1121513 1 + . ID=CGI_10026573; scaffold145 GLEAN promoter 1121051 1122050 1 - . ID=CGI_10026572; scaffold145 GLEAN mRNA 1121514 1125488 1 + . ID=CGI_10026573; scaffold145 TRF Tandem_Repeat 1124739 1124811 112 + . . scaffold145 TRF Tandem_Repeat 1125101 1125202 84 + . . scaffold145 TRF Tandem_Repeat 1127363 1127406 88 + . . scaffold145 GLEAN mRNA 1129022 1132331 0.99999 - . ID=CGI_10026574; scaffold145 TRF Tandem_Repeat 1130302 1130353 97 + . . scaffold145 GLEAN promoter 1132332 1133331 0.99999 - . ID=CGI_10026574; scaffold145 GLEAN mRNA 1133737 1141496 0.998497 - . ID=CGI_10026575; scaffold145 WUBlastX LINE_RTE-BovB 1137332 1137385 29 - . . scaffold145 WUBlastX LINE_RTE-BovB 1137375 1137575 41 - . . scaffold145 WUBlastX LINE_RTE-BovB 1137426 1137560 63 - . . scaffold145 WUBlastX LINE_RTE-BovB 1137477 1137575 56 - . . scaffold145 WUBlastX LINE_RTE-BovB 1137508 1137801 35 - . . scaffold145 WUBlastX LINE_RTE-BovB 1137631 1138191 85 - . . scaffold145 WUBlastX LINE_RTE-BovB 1137736 1138227 131 - . . scaffold145 WUBlastX LINE_RTE-BovB 1137805 1138182 206 - . . scaffold145 WUBlastX LINE_RTE-BovB 1138196 1138411 67 - . . scaffold145 WUBlastX LINE_RTE-BovB 1138259 1138369 95 - . . scaffold145 WUBlastX LINE_RTE-X 1138262 1138495 34 - . . scaffold145 WUBlastX LINE_RTE-BovB 1138262 1138408 68 - . . scaffold145 WUBlastX LINE_Jockey 1138274 1138450 49 - . . scaffold145 GLEAN promoter 1138972 1139971 0.998984 + . ID=CGI_10026576; scaffold145 WUBlastX LINE_RTE-BovB 1139296 1139721 32 - . . scaffold145 WUBlastX LINE_RTE-BovB 1139494 1139739 35 - . . scaffold145 WUBlastX LINE_RTE-BovB 1139599 1139739 66 - . . scaffold145 GLEAN mRNA 1139972 1169601 0.998984 + . ID=CGI_10026576; scaffold145 GLEAN promoter 1141497 1142496 0.998497 - . ID=CGI_10026575; scaffold145 TRF Tandem_Repeat 1150006 1150250 400 + . . scaffold145 WUBlastX LTR_Gypsy 1152131 1152340 21 + . . scaffold145 WUBlastX LTR_Gypsy 1152318 1153244 32 + . . scaffold145 WUBlastX LTR_DIRS 1152507 1154252 908 + . . scaffold145 WUBlastX LTR_DIRS 1152612 1154594 780 + . . scaffold145 WUBlastX LTR_DIRS 1154486 1155385 382 + . . scaffold145 TRF Tandem_Repeat 1159803 1159844 68 + . . scaffold145 TRF Tandem_Repeat 1159804 1159841 51 + . . scaffold145 GLEAN mRNA 1172816 1176962 0.999661 - . ID=CGI_10026577; scaffold145 GLEAN promoter 1176963 1177157 0.999661 - . ID=CGI_10026577; scaffold1450 GLEAN mRNA 1704 4744 1 - . ID=CGI_10000646; scaffold1450 GLEAN promoter 4745 5744 1 - . ID=CGI_10000646; scaffold1450 WUBlastX LINE_L2 6126 6818 250 - . . scaffold1450 WUBlastX LINE_L2 6480 6923 34 - . . scaffold1451 GLEAN mRNA 11499 12721 0.733983 - . ID=CGI_10004366; scaffold1451 GLEAN promoter 12722 13721 0.733983 - . ID=CGI_10004366; scaffold1451 GLEAN mRNA 15878 20859 1 - . ID=CGI_10004367; scaffold1451 GLEAN promoter 20860 21859 1 - . ID=CGI_10004367; scaffold1451 GLEAN mRNA 24057 29456 0.813371 - . ID=CGI_10004368; scaffold1451 GLEAN promoter 29457 30456 0.813371 - . ID=CGI_10004368; scaffold1451 GLEAN mRNA 31803 39718 0.777262 - . ID=CGI_10004369; scaffold1451 GLEAN promoter 39719 40718 0.777262 - . ID=CGI_10004369; scaffold1451 GLEAN promoter 41822 42821 0.855552 + . ID=CGI_10004370; scaffold1451 GLEAN mRNA 42822 47588 0.855552 + . ID=CGI_10004370; scaffold1451 GLEAN mRNA 48516 53956 1 - . ID=CGI_10004371; scaffold1451 GLEAN promoter 53957 54956 1 - . ID=CGI_10004371; scaffold1451 GLEAN mRNA 54526 73215 0.636277 - . ID=CGI_10004372; scaffold1451 GLEAN promoter 73216 74215 0.636277 - . ID=CGI_10004372; scaffold1451 GLEAN mRNA 75195 89135 0.733214 - . ID=CGI_10004373; scaffold1451 GLEAN promoter 89136 90135 0.733214 - . ID=CGI_10004373; scaffold1452 TRF Tandem_Repeat 6901 6958 55 + . . scaffold1452 WUBlastX DNA_hAT-Ac 14557 14736 52 + . . scaffold1452 WUBlastX DNA_hAT-Ac 14596 14745 55 + . . scaffold1452 WUBlastX DNA_hAT 14599 14772 32 + . . scaffold1452 WUBlastX DNA_hAT-Ac 15092 16021 173 + . . scaffold1452 WUBlastX DNA_hAT-Ac 15245 16351 514 + . . scaffold1452 TRF Tandem_Repeat 19475 19505 62 + . . scaffold1452 TRF Tandem_Repeat 31950 31999 64 + . . scaffold1452 TRF Tandem_Repeat 35210 35247 51 + . . scaffold1452 GLEAN promoter 41154 42153 1 + . ID=CGI_10010094; scaffold1452 GLEAN mRNA 42154 42735 1 + . ID=CGI_10010094; scaffold1452 TRF Tandem_Repeat 55921 55960 80 + . . scaffold1452 WUBlastX DNA_IS4EU 68825 69610 73 + . . scaffold1452 WUBlastX DNA_Kolobok-IS4 69080 69610 78 + . . scaffold1452 WUBlastX DNA_IS4EU 69221 69610 82 + . . scaffold1452 TRF Tandem_Repeat 69635 69679 90 + . . scaffold1452 WUBlastX DNA_IS4EU 69769 69870 36 + . . scaffold1452 TRF Tandem_Repeat 87655 87762 92 + . . scaffold1452 TRF Tandem_Repeat 87655 87779 99 + . . scaffold1452 TRF Tandem_Repeat 87669 87761 108 + . . scaffold1452 WUBlastX DNA_TcMar-Tc1 95278 95673 82 + . . scaffold1452 TRF Tandem_Repeat 102739 102803 78 + . . scaffold1452 TRF Tandem_Repeat 104335 104455 125 + . . scaffold1452 TRF Tandem_Repeat 105453 105565 108 + . . scaffold1452 TRF Tandem_Repeat 126317 127110 911 + . . scaffold1452 TRF Tandem_Repeat 128608 128647 80 + . . scaffold1452 WUBlastX DNA_TcMar-Tc1 128816 129013 33 - . . scaffold1452 WUBlastX DNA_TcMar-Tc1 128849 129001 62 - . . scaffold1452 WUBlastX DNA_TcMar-Tc1 129030 129608 112 - . . scaffold1452 TRF Tandem_Repeat 142821 142877 80 + . . scaffold1452 TRF Tandem_Repeat 142829 142881 79 + . . scaffold1452 TRF Tandem_Repeat 144032 144089 116 + . . scaffold1452 WUBlastX DNA_hAT-Tip100 170550 171071 148 - . . scaffold1452 GLEAN mRNA 176484 180104 0.999996 - . ID=CGI_10010095; scaffold1452 GLEAN promoter 180105 181104 0.999996 - . ID=CGI_10010095; scaffold1452 GLEAN promoter 181671 182670 0.69447 + . ID=CGI_10010096; scaffold1452 GLEAN mRNA 182671 183882 0.69447 + . ID=CGI_10010096; scaffold1452 GLEAN mRNA 186870 202456 0.327493 - . ID=CGI_10010097; scaffold1452 TRF Tandem_Repeat 193318 193371 74 + . . scaffold1452 TRF Tandem_Repeat 200967 200991 50 + . . scaffold1452 GLEAN promoter 202457 203456 0.327493 - . ID=CGI_10010097; scaffold1452 GLEAN mRNA 202956 203549 0.990832 - . ID=CGI_10010098; scaffold1452 GLEAN promoter 203550 204549 0.990832 - . ID=CGI_10010098; scaffold1452 TRF Tandem_Repeat 204319 204360 57 + . . scaffold1452 TRF Tandem_Repeat 204319 204360 57 + . . scaffold1452 TRF Tandem_Repeat 204703 204749 94 + . . scaffold1452 TRF Tandem_Repeat 205093 205135 77 + . . scaffold1452 TRF Tandem_Repeat 205455 205480 52 + . . scaffold1452 TRF Tandem_Repeat 206046 206095 100 + . . scaffold1452 TRF Tandem_Repeat 206357 206399 86 + . . scaffold1452 WUBlastX LINE_L1-Tx1 208510 208641 40 - . . scaffold1452 TRF Tandem_Repeat 208965 209031 89 + . . scaffold1452 TRF Tandem_Repeat 211420 211466 94 + . . scaffold1452 TRF Tandem_Repeat 211654 211686 66 + . . scaffold1452 TRF Tandem_Repeat 211684 211717 68 + . . scaffold1452 TRF Tandem_Repeat 212212 212278 89 + . . scaffold1452 TRF Tandem_Repeat 224882 224972 130 + . . scaffold1452 TRF Tandem_Repeat 227135 227186 97 + . . scaffold1452 TRF Tandem_Repeat 229317 229362 92 + . . scaffold1452 TRF Tandem_Repeat 229470 229552 166 + . . scaffold1452 TRF Tandem_Repeat 230810 230847 58 + . . scaffold1452 TRF Tandem_Repeat 232577 232767 91 + . . scaffold1453 GLEAN promoter 92 1091 0.99901 + . ID=CGI_10001599; scaffold1453 GLEAN mRNA 1092 26923 0.99901 + . ID=CGI_10001599; scaffold1454 WUBlastX LTR_DIRS 737 982 20 + . . scaffold1454 WUBlastX LTR_DIRS 937 1458 53 + . . scaffold1454 WUBlastX LTR_DIRS 1692 1856 32 + . . scaffold1454 TRF Tandem_Repeat 2300 2341 68 + . . scaffold1454 TRF Tandem_Repeat 2303 2340 51 + . . scaffold1454 GLEAN mRNA 4447 15298 0.999999 - . ID=CGI_10004310; scaffold1454 WUBlastX DNA_TcMar-Tc1 8740 9048 39 - . . scaffold1454 WUBlastX DNA_TcMar-Tc1 8764 9120 37 - . . scaffold1454 TRF Tandem_Repeat 9701 9750 100 + . . scaffold1454 GLEAN promoter 15299 16298 0.999999 - . ID=CGI_10004310; scaffold1454 TRF Tandem_Repeat 18040 18067 56 + . . scaffold1454 GLEAN mRNA 26701 27894 0.694119 - . ID=CGI_10004311; scaffold1454 GLEAN promoter 27895 28894 0.694119 - . ID=CGI_10004311; scaffold1454 WUBlastX DNA_Harbinger 37534 38151 253 - . . scaffold1454 GLEAN mRNA 49031 49987 1 - . ID=CGI_10004312; scaffold1454 GLEAN promoter 49988 50987 1 - . ID=CGI_10004312; scaffold1454 GLEAN mRNA 52591 59447 0.570116 - . ID=CGI_10004313; scaffold1454 WUBlastX RC_Helitron 55871 56437 240 - . . scaffold1454 WUBlastX DNA_Helitron 55964 56632 268 - . . scaffold1454 GLEAN promoter 59448 60447 0.570116 - . ID=CGI_10004313; scaffold1454 TRF Tandem_Repeat 59494 59554 122 + . . scaffold1454 GLEAN mRNA 63589 73088 0.838276 - . ID=CGI_10004314; scaffold1454 WUBlastX DNA_Zator 63934 64416 113 - . . scaffold1454 WUBlastX LTR_ERV1 66278 66556 23 - . . scaffold1454 WUBlastX LTR_ERV1 66350 66406 26 - . . scaffold1454 WUBlastX LTR_ERV1 66359 66406 28 - . . scaffold1454 GLEAN promoter 73089 74088 0.838276 - . ID=CGI_10004314; scaffold1454 TRF Tandem_Repeat 74890 74915 52 + . . scaffold1454 WUBlastX DNA_Helitron 80420 81085 58 + . . scaffold1454 WUBlastX DNA_Helitron 81098 82051 24 + . . scaffold1454 WUBlastX RC_Helitron 81497 83224 363 + . . scaffold1454 WUBlastX RC_Helitron 82031 83125 401 + . . scaffold1454 WUBlastX DNA_Helitron 83177 85558 546 + . . scaffold1454 WUBlastX LINE_L2 92314 93009 190 + . . scaffold1454 TRF Tandem_Repeat 95209 96207 1503 + . . scaffold1455 GLEAN promoter 1843 2842 0.999993 + . ID=CGI_10003298; scaffold1455 GLEAN mRNA 2843 13113 0.999993 + . ID=CGI_10003298; scaffold1455 TRF Tandem_Repeat 3400 3527 102 + . . scaffold1455 TRF Tandem_Repeat 6762 6803 84 + . . scaffold1455 GLEAN mRNA 15398 29987 0.99967 - . ID=CGI_10003299; scaffold1455 TRF Tandem_Repeat 26202 26248 58 + . . scaffold1455 TRF Tandem_Repeat 26202 26248 76 + . . scaffold1455 TRF Tandem_Repeat 26958 27006 98 + . . scaffold1455 GLEAN promoter 29988 30987 0.99967 - . ID=CGI_10003299; scaffold1455 GLEAN mRNA 55225 56486 1 - . ID=CGI_10003300; scaffold1455 GLEAN promoter 56487 57486 1 - . ID=CGI_10003300; scaffold1455 GLEAN mRNA 56849 64611 0.522943 - . ID=CGI_10003301; scaffold1455 WUBlastX LTR_Gypsy 57372 58085 83 - . . scaffold1455 GLEAN promoter 64612 65611 0.522943 - . ID=CGI_10003301; scaffold1456 WUBlastX LTR_Gypsy 302 1837 182 + . . scaffold1456 WUBlastX LTR_Gypsy-Cigr 1121 2119 221 + . . scaffold1456 WUBlastX LTR_Gypsy 20588 21100 68 + . . scaffold1456 WUBlastX LTR_Gypsy 20672 22285 207 + . . scaffold1456 WUBlastX LTR_Gypsy-Cigr 22276 24459 1540 + . . scaffold1456 WUBlastX LTR_Gypsy-Cigr 24414 25256 456 + . . scaffold1456 GLEAN promoter 24546 25545 0.593318 + . ID=CGI_10007782; scaffold1456 GLEAN mRNA 25546 26719 0.593318 + . ID=CGI_10007782; scaffold1456 TRF Tandem_Repeat 28753 28778 52 + . . scaffold1456 WUBlastX DNA_Crypton 36968 37285 92 + . . scaffold1456 TRF Tandem_Repeat 42700 42749 66 + . . scaffold1456 TRF Tandem_Repeat 42700 42749 57 + . . scaffold1456 TRF Tandem_Repeat 45488 45541 108 + . . scaffold1456 TRF Tandem_Repeat 50431 50491 113 + . . scaffold1456 WUBlastX LTR_Ngaro 61737 61994 59 + . . scaffold1456 WUBlastX LTR_Ngaro 61752 62444 54 + . . scaffold1456 TRF Tandem_Repeat 78732 78758 54 + . . scaffold1456 TRF Tandem_Repeat 79369 79402 68 + . . scaffold1456 TRF Tandem_Repeat 94853 94897 90 + . . scaffold1456 TRF Tandem_Repeat 96259 96740 483 + . . scaffold1456 TRF Tandem_Repeat 96261 96773 554 + . . scaffold1456 TRF Tandem_Repeat 97270 97392 156 + . . scaffold1456 WUBlastX DNA_TcMar-Fot1 97930 98412 85 + . . scaffold1456 WUBlastX DNA_TcMar-Fot1 97975 98511 69 + . . scaffold1456 TRF Tandem_Repeat 103433 103462 60 + . . scaffold1456 TRF Tandem_Repeat 116693 116748 112 + . . scaffold1456 WUBlastX LTR_Gypsy-Cigr 117094 117414 71 + . . scaffold1456 WUBlastX LTR_Gypsy 117256 117453 31 + . . scaffold1456 WUBlastX LTR_Gypsy 117447 117797 56 + . . scaffold1456 WUBlastX LTR_Gypsy 117450 117746 112 + . . scaffold1456 WUBlastX LTR_Gypsy 117731 117898 24 + . . scaffold1456 WUBlastX LTR_Gypsy 117865 118113 45 + . . scaffold1456 WUBlastX LTR_Gypsy 117925 118113 56 + . . scaffold1456 WUBlastX LTR_Gypsy 118015 118113 58 + . . scaffold1456 WUBlastX LTR_Gypsy 118015 118140 55 + . . scaffold1456 WUBlastX LTR_Gypsy 118555 118692 34 + . . scaffold1456 TRF Tandem_Repeat 119137 119183 94 + . . scaffold1456 GLEAN promoter 135036 136035 1 + . ID=CGI_10007783; scaffold1456 GLEAN mRNA 136036 137688 1 + . ID=CGI_10007783; scaffold1456 GLEAN promoter 139350 140349 0.999855 + . ID=CGI_10007784; scaffold1456 GLEAN mRNA 140350 145955 0.999855 + . ID=CGI_10007784; scaffold1456 TRF Tandem_Repeat 143729 144156 676 + . . scaffold1456 GLEAN mRNA 146729 157664 0.499837 - . ID=CGI_10007785; scaffold1456 TRF Tandem_Repeat 147292 147321 60 + . . scaffold1456 GLEAN promoter 157665 158664 0.499837 - . ID=CGI_10007785; scaffold1456 TRF Tandem_Repeat 157755 157804 100 + . . scaffold1456 TRF Tandem_Repeat 162013 162213 222 + . . scaffold1456 TRF Tandem_Repeat 162013 162213 179 + . . scaffold1456 WUBlastX DNA_Harbinger 164925 165128 26 - . . scaffold1456 WUBlastX DNA_Harbinger 165475 165843 46 - . . scaffold1456 TRF Tandem_Repeat 166591 166623 66 + . . scaffold1456 TRF Tandem_Repeat 169491 169552 99 + . . scaffold1456 TRF Tandem_Repeat 169492 169551 88 + . . scaffold1456 TRF Tandem_Repeat 169493 169578 82 + . . scaffold1456 TRF Tandem_Repeat 169494 169578 91 + . . scaffold1456 GLEAN promoter 183830 184829 0.836235 + . ID=CGI_10007786; scaffold1456 GLEAN mRNA 184830 185453 0.836235 + . ID=CGI_10007786; scaffold1456 GLEAN mRNA 186243 190486 1 - . ID=CGI_10007787; scaffold1456 TRF Tandem_Repeat 188071 188291 302 + . . scaffold1456 TRF Tandem_Repeat 189077 189216 122 + . . scaffold1456 GLEAN promoter 190487 191486 1 - . ID=CGI_10007787; scaffold1458 WUBlastX LTR_Ngaro 1731 1973 74 - . . scaffold1458 WUBlastX LTR_Ngaro 1749 2141 33 - . . scaffold1458 WUBlastX LTR_Ngaro 1749 2039 67 - . . scaffold1458 WUBlastX LTR_Ngaro 2112 3371 440 - . . scaffold1458 WUBlastX LTR_Ngaro 2669 3631 372 - . . scaffold1458 WUBlastX LTR_Ngaro 3717 4139 74 - . . scaffold1458 WUBlastX LTR_Ngaro 4214 4483 46 - . . scaffold1459 GLEAN promoter 1189 2188 0.710953 + . ID=CGI_10010099; scaffold1459 GLEAN mRNA 2189 7318 0.710953 + . ID=CGI_10010099; scaffold1459 GLEAN mRNA 7515 18289 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX LINE_L1 10230 10505 42 + . . scaffold1459 WUBlastX LINE_L1-Tx1 10248 10445 63 + . . scaffold1459 WUBlastX LINE_L1-Tx1 10504 10599 31 + . . scaffold1459 WUBlastX LINE_L1 10541 10936 90 + . . scaffold1459 WUBlastX LINE_L1 10652 10987 60 + . . scaffold1459 WUBlastX LINE_L1-Tx1 11004 11480 114 + . . scaffold1459 WUBlastX LINE_L1-Tx1 15229 15711 119 + . . scaffold1459 WUBlastX LINE_L1-Tx1 15304 15768 193 + . . scaffold1459 WUBlastX LINE_L1-Tx1 15340 15711 225 + . . scaffold1459 WUBlastX LINE_L1-Tx1 15346 16080 114 + . . scaffold1459 WUBlastX LINE_L1 16042 16113 25 + . . scaffold1459 WUBlastX LINE_L1 16104 16487 66 + . . scaffold1459 WUBlastX LINE_L1 16116 16427 84 + . . scaffold1459 WUBlastX LINE_L1-Tx1 16161 16424 108 + . . scaffold1459 WUBlastX LINE_L1-Tx1 16544 16837 56 + . . scaffold1459 WUBlastX LINE_L1 17798 17914 20 + . . scaffold1459 GLEAN promoter 18290 19289 0.874986 - . ID=CGI_10010100; scaffold1459 WUBlastX DNA_TcMar-Marin 21726 22022 197 - . . scaffold1459 WUBlastX DNA_TcMar-Marin 21729 22115 100 - . . scaffold1459 WUBlastX DNA_TcMar-Marin 22296 22442 79 - . . scaffold1459 WUBlastX DNA_TcMar-Marin 22331 22795 98 - . . scaffold1459 WUBlastX DNA_TcMar-Marin 22448 22795 189 - . . scaffold1459 WUBlastX DNA_TcMar-Marin 22514 22867 34 - . . scaffold1459 GLEAN mRNA 26186 26473 0.693151 - . ID=CGI_10010101; scaffold1459 GLEAN promoter 26474 27473 0.693151 - . ID=CGI_10010101; scaffold1459 GLEAN promoter 28146 29145 0.988368 + . ID=CGI_10010102; scaffold1459 GLEAN mRNA 29146 29779 0.988368 + . ID=CGI_10010102; scaffold1459 GLEAN mRNA 36992 40536 1 - . ID=CGI_10010103; scaffold1459 GLEAN promoter 40537 41536 1 - . ID=CGI_10010103; scaffold1459 GLEAN promoter 43783 44782 1 + . ID=CGI_10010104; scaffold1459 GLEAN mRNA 44783 48696 1 + . ID=CGI_10010104; scaffold1459 GLEAN promoter 50035 51034 0.38176 + . ID=CGI_10010105; scaffold1459 GLEAN mRNA 51035 56173 0.38176 + . ID=CGI_10010105; scaffold1459 GLEAN promoter 86335 87334 1 + . ID=CGI_10010106; scaffold1459 GLEAN mRNA 87335 90250 1 + . ID=CGI_10010106; scaffold1459 GLEAN mRNA 92847 117435 0.999674 - . ID=CGI_10010107; scaffold1459 WUBlastX LTR_Gypsy 105470 105886 44 + . . scaffold1459 WUBlastX LTR_Gypsy 105614 109222 1229 + . . scaffold1459 WUBlastX LTR_Gypsy 106127 109819 1149 + . . scaffold1459 WUBlastX LTR_Copia 109760 109852 29 + . . scaffold1459 WUBlastX LTR_Gypsy 110081 110236 20 + . . scaffold1459 TRF Tandem_Repeat 114643 114672 60 + . . scaffold1459 GLEAN promoter 117436 118435 0.999674 - . ID=CGI_10010107; scaffold1459 GLEAN mRNA 118548 127571 0.68429 - . ID=CGI_10010108; scaffold1459 GLEAN promoter 127572 128571 0.68429 - . ID=CGI_10010108; scaffold1459 WUBlastX LINE_I 131636 132112 49 + . . scaffold1459 WUBlastX LINE_CR1 131744 132433 469 + . . scaffold1459 TRF Tandem_Repeat 133862 133911 82 + . . scaffold1459 TRF Tandem_Repeat 134022 134060 60 + . . scaffold1459 TRF Tandem_Repeat 144774 144806 66 + . . scaffold1459 GLEAN promoter 152995 153994 0.998274 + . ID=CGI_10010109; scaffold1459 GLEAN mRNA 153995 154834 0.998274 + . ID=CGI_10010109; scaffold1459 TRF Tandem_Repeat 158967 158999 66 + . . scaffold1459 TRF Tandem_Repeat 160156 160213 116 + . . scaffold1459 GLEAN mRNA 162596 163894 0.98939 - . ID=CGI_10010110; scaffold1459 GLEAN promoter 163895 164894 0.98939 - . ID=CGI_10010110; scaffold1459 GLEAN mRNA 170290 171495 0.44203 - . ID=CGI_10010111; scaffold1459 GLEAN promoter 171496 172495 0.44203 - . ID=CGI_10010111; scaffold1459 TRF Tandem_Repeat 173383 173422 57 + . . scaffold1459 TRF Tandem_Repeat 176206 176262 105 + . . scaffold1459 TRF Tandem_Repeat 178750 178786 74 + . . scaffold1459 GLEAN promoter 181123 182122 0.506922 + . ID=CGI_10010112; scaffold1459 GLEAN mRNA 182123 182335 0.506922 + . ID=CGI_10010112; scaffold1459 WUBlastX DNA_Kolobok-IS4 183682 183969 31 + . . scaffold1459 WUBlastX DNA_IS4EU 184128 184289 48 + . . scaffold1459 WUBlastX DNA_IS4EU 184306 184617 81 + . . scaffold1459 WUBlastX DNA_IS4EU 184378 184584 83 + . . scaffold1459 WUBlastX LTR_Gypsy 187482 187673 91 + . . scaffold1459 TRF Tandem_Repeat 192717 192785 88 + . . scaffold1459 GLEAN promoter 198438 199437 0.999999 + . ID=CGI_10010113; scaffold1459 GLEAN mRNA 199438 199824 0.999999 + . ID=CGI_10010113; scaffold1459 GLEAN mRNA 205018 215216 0.471924 - . ID=CGI_10010114; scaffold1459 TRF Tandem_Repeat 205904 205929 52 + . . scaffold1459 TRF Tandem_Repeat 214141 214221 65 + . . scaffold1459 TRF Tandem_Repeat 214170 214207 67 + . . scaffold1459 WUBlastX LINE_L1-Tx1 214255 214554 43 - . . scaffold1459 GLEAN promoter 215217 216216 0.471924 - . ID=CGI_10010114; scaffold1459 TRF Tandem_Repeat 221160 221217 64 + . . scaffold1459 TRF Tandem_Repeat 232548 232592 90 + . . scaffold1459 TRF Tandem_Repeat 233706 233762 93 + . . scaffold1459 GLEAN mRNA 242148 250597 0.877473 - . ID=CGI_10010115; scaffold1459 GLEAN promoter 250598 251597 0.877473 - . ID=CGI_10010115; scaffold146 GLEAN promoter 795 1794 1 + . ID=CGI_10024877; scaffold146 GLEAN mRNA 1795 3559 1 + . ID=CGI_10024877; scaffold146 TRF Tandem_Repeat 4773 4825 106 + . . scaffold146 TRF Tandem_Repeat 7237 7263 54 + . . scaffold146 WUBlastX LINE_RTE-X 7417 7899 139 - . . scaffold146 WUBlastX LINE_RTE-X 7531 7848 162 - . . scaffold146 WUBlastX LINE_RTE-X 7561 7905 162 - . . scaffold146 WUBlastX LINE_RTE-X 7905 8129 84 - . . scaffold146 WUBlastX LINE_Jockey 9450 10013 78 - . . scaffold146 WUBlastX LINE_RTE-X 9477 9878 252 - . . scaffold146 GLEAN promoter 10178 11177 0.999234 + . ID=CGI_10024878; scaffold146 TRF Tandem_Repeat 10701 10748 96 + . . scaffold146 GLEAN mRNA 11178 24512 0.999234 + . ID=CGI_10024878; scaffold146 GLEAN mRNA 11205 15456 0.562097 - . ID=CGI_10024879; scaffold146 GLEAN promoter 15457 16456 0.562097 - . ID=CGI_10024879; scaffold146 WUBlastX LINE_CR1-L2 15977 16372 20 + . . scaffold146 WUBlastX LINE_L2 16040 16423 97 + . . scaffold146 TRF Tandem_Repeat 17125 17162 67 + . . scaffold146 TRF Tandem_Repeat 19081 19130 100 + . . scaffold146 TRF Tandem_Repeat 19350 19683 404 + . . scaffold146 TRF Tandem_Repeat 19749 19807 118 + . . scaffold146 GLEAN mRNA 26512 28231 1 - . ID=CGI_10024880; scaffold146 GLEAN promoter 28232 29231 1 - . ID=CGI_10024880; scaffold146 TRF Tandem_Repeat 28531 28564 68 + . . scaffold146 GLEAN mRNA 29809 30901 1 - . ID=CGI_10024881; scaffold146 GLEAN promoter 30902 31901 1 - . ID=CGI_10024881; scaffold146 GLEAN promoter 33063 34062 0.499837 + . ID=CGI_10024882; scaffold146 GLEAN mRNA 34063 53916 0.499837 + . ID=CGI_10024882; scaffold146 TRF Tandem_Repeat 41930 41957 56 + . . scaffold146 TRF Tandem_Repeat 47549 47596 96 + . . scaffold146 GLEAN promoter 54760 55759 0.999375 + . ID=CGI_10024883; scaffold146 GLEAN mRNA 55760 61498 0.999375 + . ID=CGI_10024883; scaffold146 TRF Tandem_Repeat 67217 67627 295 + . . scaffold146 TRF Tandem_Repeat 67240 67673 294 + . . scaffold146 GLEAN promoter 68659 69658 0.999999 + . ID=CGI_10024884; scaffold146 TRF Tandem_Repeat 69500 69582 166 + . . scaffold146 GLEAN mRNA 69659 69885 0.999999 + . ID=CGI_10024884; scaffold146 GLEAN promoter 77075 78074 1 + . ID=CGI_10024885; scaffold146 GLEAN mRNA 78075 91763 1 + . ID=CGI_10024885; scaffold146 TRF Tandem_Repeat 85067 85979 1105 + . . scaffold146 TRF Tandem_Repeat 97213 97252 80 + . . scaffold146 GLEAN promoter 100684 101683 0.999372 + . ID=CGI_10024886; scaffold146 GLEAN mRNA 101684 101950 0.999372 + . ID=CGI_10024886; scaffold146 TRF Tandem_Repeat 103103 103164 117 + . . scaffold146 TRF Tandem_Repeat 105494 105551 75 + . . scaffold146 GLEAN promoter 109940 110939 0.958207 + . ID=CGI_10024887; scaffold146 GLEAN mRNA 110940 163846 0.958207 + . ID=CGI_10024887; scaffold146 GLEAN mRNA 121429 122149 0.999826 - . ID=CGI_10024888; scaffold146 GLEAN promoter 122150 123149 0.999826 - . ID=CGI_10024888; scaffold146 TRF Tandem_Repeat 150883 150924 77 + . . scaffold146 TRF Tandem_Repeat 150923 150956 68 + . . scaffold146 GLEAN promoter 165772 166771 0.739802 + . ID=CGI_10024889; scaffold146 GLEAN mRNA 166772 190859 0.739802 + . ID=CGI_10024889; scaffold146 TRF Tandem_Repeat 178176 178634 659 + . . scaffold146 TRF Tandem_Repeat 178704 179490 1028 + . . scaffold146 TRF Tandem_Repeat 178704 179489 1201 + . . scaffold146 GLEAN promoter 192989 193988 0.999372 + . ID=CGI_10024890; scaffold146 GLEAN mRNA 193989 194405 0.999372 + . ID=CGI_10024890; scaffold146 GLEAN mRNA 201585 203515 1 - . ID=CGI_10024891; scaffold146 GLEAN promoter 203516 204515 1 - . ID=CGI_10024891; scaffold146 GLEAN promoter 205988 206987 0.744629 + . ID=CGI_10024892; scaffold146 GLEAN mRNA 206988 251697 0.744629 + . ID=CGI_10024892; scaffold146 TRF Tandem_Repeat 210206 210248 86 + . . scaffold146 TRF Tandem_Repeat 219504 219866 379 + . . scaffold146 GLEAN mRNA 225913 226458 1 - . ID=CGI_10024893; scaffold146 GLEAN promoter 226459 227458 1 - . ID=CGI_10024893; scaffold146 TRF Tandem_Repeat 240569 241435 915 + . . scaffold146 TRF Tandem_Repeat 255135 255206 126 + . . scaffold146 WUBlastX LINE_RTE-BovB 283676 283873 59 - . . scaffold146 GLEAN promoter 285191 286190 0.999954 + . ID=CGI_10024894; scaffold146 GLEAN mRNA 286191 286724 0.999954 + . ID=CGI_10024894; scaffold146 TRF Tandem_Repeat 288494 288519 52 + . . scaffold146 WUBlastX DNA_TcMar-Tc1 293114 293521 102 - . . scaffold146 WUBlastX DNA_TcMar-Tc1 293114 293398 179 - . . scaffold146 WUBlastX DNA_TcMar-Tc1 293114 293455 163 - . . scaffold146 WUBlastX DNA_TcMar-Tc1 293442 293570 60 - . . scaffold146 WUBlastX DNA_TcMar-Tc1 293576 294016 92 - . . scaffold146 WUBlastX DNA_TcMar-Tc1 293594 294151 21 - . . scaffold146 TRF Tandem_Repeat 307184 307216 66 + . . scaffold146 GLEAN mRNA 313191 316026 0.993907 - . ID=CGI_10024895; scaffold146 GLEAN promoter 316027 317026 0.993907 - . ID=CGI_10024895; scaffold146 GLEAN mRNA 323084 328779 0.777647 - . ID=CGI_10024896; scaffold146 GLEAN promoter 328780 329779 0.777647 - . ID=CGI_10024896; scaffold146 TRF Tandem_Repeat 330551 330617 71 + . . scaffold146 TRF Tandem_Repeat 331132 331168 74 + . . scaffold146 WUBlastX LINE_CR1-L2 343385 343582 45 + . . scaffold146 GLEAN mRNA 345580 375561 0.539484 - . ID=CGI_10024897; scaffold146 TRF Tandem_Repeat 348651 348761 152 + . . scaffold146 TRF Tandem_Repeat 350736 350894 156 + . . scaffold146 TRF Tandem_Repeat 355601 355645 63 + . . scaffold146 GLEAN promoter 356715 357714 0.999672 + . ID=CGI_10024898; scaffold146 GLEAN mRNA 357715 360121 0.999672 + . ID=CGI_10024898; scaffold146 GLEAN promoter 361174 362173 0.54485 + . ID=CGI_10024899; scaffold146 GLEAN mRNA 362174 373526 0.54485 + . ID=CGI_10024899; scaffold146 GLEAN promoter 375562 376561 0.539484 - . ID=CGI_10024897; scaffold146 WUBlastX LINE_Rex-Babar 379025 379126 25 + . . scaffold146 WUBlastX LINE_Rex-Babar 379052 379204 31 + . . scaffold146 WUBlastX LINE_RTE-X 379167 380369 193 + . . scaffold146 WUBlastX LINE_RTE-X 379407 380381 203 + . . scaffold146 WUBlastX LINE_RTE-X 379881 380546 163 + . . scaffold146 WUBlastX LINE_RTE-X 379902 380354 211 + . . scaffold146 WUBlastX LINE_RTE-X 380560 380820 103 + . . scaffold146 WUBlastX LINE_RTE-X 380563 380868 83 + . . scaffold146 WUBlastX LINE_RTE-X 381063 381221 35 + . . scaffold146 WUBlastX LINE_RTE-X 381090 381233 60 + . . scaffold146 WUBlastX LINE_RTE-X 381123 381278 56 + . . scaffold146 WUBlastX LINE_RTE-X 381123 381248 65 + . . scaffold146 WUBlastX LINE_RTE-X 381126 381224 78 + . . scaffold146 WUBlastX LINE_RTE-X 381144 381311 21 + . . scaffold146 GLEAN promoter 381603 382602 0.999998 + . ID=CGI_10024900; scaffold146 WUBlastX LINE_RTE-X 381611 382150 97 + . . scaffold146 WUBlastX LINE_RTE-X 381617 382030 103 + . . scaffold146 GLEAN mRNA 382603 383808 0.999998 + . ID=CGI_10024900; scaffold146 GLEAN promoter 391087 392086 1 + . ID=CGI_10024901; scaffold146 GLEAN mRNA 392087 393584 1 + . ID=CGI_10024901; scaffold146 GLEAN promoter 397211 398210 0.999676 + . ID=CGI_10024902; scaffold146 GLEAN mRNA 398211 400945 0.999676 + . ID=CGI_10024902; scaffold146 TRF Tandem_Repeat 403659 403703 72 + . . scaffold146 WUBlastX LTR_DIRS 406228 407085 296 - . . scaffold146 WUBlastX LTR_DIRS 407078 407899 251 - . . scaffold146 WUBlastX LTR_DIRS 407189 407806 323 - . . scaffold146 GLEAN promoter 407838 408837 0.993669 + . ID=CGI_10024903; scaffold146 GLEAN mRNA 408838 413294 0.993669 + . ID=CGI_10024903; scaffold146 TRF Tandem_Repeat 423790 423819 51 + . . scaffold146 GLEAN mRNA 425246 429148 0.999641 - . ID=CGI_10024904; scaffold146 GLEAN promoter 428465 429464 0.544647 + . ID=CGI_10024905; scaffold146 GLEAN promoter 429149 430148 0.999641 - . ID=CGI_10024904; scaffold146 GLEAN mRNA 429465 442479 0.544647 + . ID=CGI_10024905; scaffold146 TRF Tandem_Repeat 433327 433354 56 + . . scaffold146 TRF Tandem_Repeat 434148 434188 73 + . . scaffold146 TRF Tandem_Repeat 438182 438219 76 + . . scaffold146 GLEAN mRNA 445752 454994 0.544479 - . ID=CGI_10024906; scaffold146 WUBlastX LINE_RTE-X 453034 453384 96 - . . scaffold146 WUBlastX LINE_RTE-X 453061 453348 118 - . . scaffold146 GLEAN promoter 454385 455384 0.999997 + . ID=CGI_10024907; scaffold146 GLEAN promoter 454995 455994 0.544479 - . ID=CGI_10024906; scaffold146 GLEAN mRNA 455385 463623 0.999997 + . ID=CGI_10024907; scaffold146 GLEAN mRNA 465972 470163 0.999376 - . ID=CGI_10024908; scaffold146 GLEAN promoter 470164 471163 0.999376 - . ID=CGI_10024908; scaffold146 GLEAN promoter 473011 474010 0.999971 + . ID=CGI_10024909; scaffold146 GLEAN mRNA 474011 476157 0.999971 + . ID=CGI_10024909; scaffold146 TRF Tandem_Repeat 475479 475737 394 + . . scaffold146 TRF Tandem_Repeat 475479 475781 392 + . . scaffold146 GLEAN mRNA 481086 482117 0.863143 - . ID=CGI_10024910; scaffold146 GLEAN promoter 482118 483117 0.863143 - . ID=CGI_10024910; scaffold146 GLEAN mRNA 482327 483311 0.425607 - . ID=CGI_10024911; scaffold146 GLEAN promoter 483312 484311 0.425607 - . ID=CGI_10024911; scaffold146 WUBlastX LTR_Ngaro 488901 489287 52 + . . scaffold146 WUBlastX LTR_Ngaro 489235 489375 61 + . . scaffold146 WUBlastX LTR_Ngaro 489238 489450 31 + . . scaffold146 WUBlastX LTR_Ngaro 489462 489776 211 + . . scaffold146 WUBlastX LTR_Ngaro 489480 489935 198 + . . scaffold146 WUBlastX LTR_Ngaro 489775 490041 156 + . . scaffold146 TRF Tandem_Repeat 507764 507801 76 + . . scaffold146 GLEAN promoter 509092 510091 0.728455 + . ID=CGI_10024912; scaffold146 GLEAN mRNA 510092 517144 0.728455 + . ID=CGI_10024912; scaffold146 TRF Tandem_Repeat 519886 519931 92 + . . scaffold146 TRF Tandem_Repeat 520490 520556 66 + . . scaffold146 TRF Tandem_Repeat 520492 520555 56 + . . scaffold146 WUBlastX LTR_Gypsy 523461 524588 160 + . . scaffold146 WUBlastX LTR_Gypsy 523584 524474 171 + . . scaffold146 WUBlastX LTR_Gypsy 523779 524747 110 + . . scaffold146 TRF Tandem_Repeat 526146 526188 86 + . . scaffold146 TRF Tandem_Repeat 528252 528292 82 + . . scaffold146 TRF Tandem_Repeat 537404 537446 86 + . . scaffold146 TRF Tandem_Repeat 538952 539083 174 + . . scaffold146 TRF Tandem_Repeat 538956 539099 139 + . . scaffold146 WUBlastX LINE_L1-Tx1 553879 554007 59 - . . scaffold146 TRF Tandem_Repeat 558563 559361 903 + . . scaffold146 GLEAN promoter 560396 561395 0.986676 + . ID=CGI_10024913; scaffold146 WUBlastX LINE_CR1 560649 561137 123 + . . scaffold146 GLEAN mRNA 561396 561749 0.986676 + . ID=CGI_10024913; scaffold146 WUBlastX LINE_L1-Tx1 561791 562915 272 + . . scaffold146 WUBlastX LINE_L1-Tx1 562867 563436 291 + . . scaffold146 WUBlastX LINE_R2-Hero 563119 563505 57 + . . scaffold146 TRF Tandem_Repeat 563463 563487 50 + . . scaffold146 WUBlastX LINE_L2 563847 563891 20 + . . scaffold146 WUBlastX LINE_L1-Tx1 564194 564232 24 + . . scaffold146 WUBlastX LINE_L1-Tx1 564363 565142 141 + . . scaffold146 WUBlastX LINE_L1-Tx1 564591 566018 411 + . . scaffold146 TRF Tandem_Repeat 576697 576746 66 + . . scaffold146 WUBlastX LTR_DIRS? 580712 581149 47 + . . scaffold146 WUBlastX LINE_CR1 586684 587337 103 + . . scaffold146 WUBlastX LINE_CR1-L2 586780 587310 251 + . . scaffold146 WUBlastX LINE_L2 587298 587711 58 + . . scaffold146 GLEAN promoter 587959 588958 0.999984 + . ID=CGI_10024914; scaffold146 WUBlastX LINE_L1 588254 588916 58 + . . scaffold146 WUBlastX LINE_L2 588299 588859 79 + . . scaffold146 WUBlastX LINE_L1 588335 589111 40 + . . scaffold146 GLEAN mRNA 588959 589360 0.999984 + . ID=CGI_10024914; scaffold146 WUBlastX LINE_L1 589971 590558 235 + . . scaffold146 WUBlastX LINE_L1-Tx1 590579 591442 402 + . . scaffold146 WUBlastX LINE_L1 591430 591558 59 + . . scaffold146 WUBlastX LINE_L1-Tx1 591537 593666 724 + . . scaffold146 TRF Tandem_Repeat 613775 613851 91 + . . scaffold146 TRF Tandem_Repeat 613775 613853 77 + . . scaffold146 TRF Tandem_Repeat 616130 616171 50 + . . scaffold146 GLEAN mRNA 617556 637446 0.912862 - . ID=CGI_10024915; scaffold146 TRF Tandem_Repeat 619152 619190 62 + . . scaffold146 WUBlastX LINE_L1-Tx1 624787 625665 118 - . . scaffold146 WUBlastX LINE_L1-Tx1 624937 625695 152 - . . scaffold146 GLEAN promoter 637447 638446 0.912862 - . ID=CGI_10024915; scaffold146 GLEAN mRNA 638309 652967 0.499837 - . ID=CGI_10024916; scaffold146 WUBlastX LINE_L1-Tx1 641979 642203 45 - . . scaffold146 WUBlastX LINE_Penelope 643735 643986 46 - . . scaffold146 WUBlastX LINE_Penelope 643747 644151 23 - . . scaffold146 WUBlastX LINE_Penelope 643774 644052 60 - . . scaffold146 TRF Tandem_Repeat 646532 646571 71 + . . scaffold146 GLEAN promoter 652968 653967 0.499837 - . ID=CGI_10024916; scaffold146 WUBlastX LTR_Gypsy 654061 654273 21 + . . scaffold146 WUBlastX LTR_Gypsy 654184 654780 35 + . . scaffold146 WUBlastX LTR_Gypsy 654370 654912 163 + . . scaffold146 WUBlastX LTR_Gypsy 654376 655032 75 + . . scaffold146 WUBlastX LTR_Gypsy 655224 655667 27 + . . scaffold146 WUBlastX LTR_Gypsy 655314 655616 44 + . . scaffold146 WUBlastX LTR_Gypsy 655437 659246 2176 + . . scaffold146 WUBlastX LTR_Gypsy 658884 659339 157 + . . scaffold146 TRF Tandem_Repeat 659360 659435 125 + . . scaffold146 WUBlastX LTR_Copia 659478 659606 22 + . . scaffold146 TRF Tandem_Repeat 661788 661843 80 + . . scaffold146 WUBlastX DNA_Harbinger 662047 662271 40 - . . scaffold146 WUBlastX DNA_Harbinger 662801 662971 102 - . . scaffold146 TRF Tandem_Repeat 662983 663085 86 + . . scaffold146 GLEAN mRNA 667336 668501 0.889923 - . ID=CGI_10024917; scaffold146 GLEAN promoter 668502 669501 0.889923 - . ID=CGI_10024917; scaffold146 GLEAN mRNA 668861 671162 1 - . ID=CGI_10024918; scaffold146 GLEAN promoter 671163 672162 1 - . ID=CGI_10024918; scaffold146 GLEAN mRNA 671163 748128 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 675155 675198 88 + . . scaffold146 TRF Tandem_Repeat 682438 682493 103 + . . scaffold146 TRF Tandem_Repeat 687974 688017 88 + . . scaffold146 WUBlastX DNA_hAT-hATw 697913 698413 28 - . . scaffold146 TRF Tandem_Repeat 699737 699774 76 + . . scaffold146 TRF Tandem_Repeat 709789 710034 219 + . . scaffold146 TRF Tandem_Repeat 724033 724083 102 + . . scaffold146 TRF Tandem_Repeat 735632 735730 103 + . . scaffold146 TRF Tandem_Repeat 738550 738593 79 + . . scaffold146 TRF Tandem_Repeat 744529 744579 75 + . . scaffold146 GLEAN promoter 748129 749128 0.737513 - . ID=CGI_10024919; scaffold146 TRF Tandem_Repeat 761674 761709 63 + . . scaffold146 WUBlastX DNA_hAT-Ac 762147 762488 97 + . . scaffold146 WUBlastX DNA_hAT-Ac 762279 762488 101 + . . scaffold146 WUBlastX DNA_hAT-Ac 762430 762831 113 + . . scaffold146 WUBlastX DNA_hAT-Ac 762544 762834 146 + . . scaffold146 WUBlastX DNA_hAT-Ac 762610 762888 148 + . . scaffold146 WUBlastX DNA_hAT-Ac 762646 762954 55 + . . scaffold146 TRF Tandem_Repeat 764776 764852 154 + . . scaffold146 GLEAN promoter 774921 775920 0.836238 + . ID=CGI_10024920; scaffold146 GLEAN mRNA 775921 777636 0.836238 + . ID=CGI_10024920; scaffold146 GLEAN promoter 778912 779911 0.997836 + . ID=CGI_10024921; scaffold146 GLEAN mRNA 779912 801569 0.997836 + . ID=CGI_10024921; scaffold146 TRF Tandem_Repeat 793684 793918 150 + . . scaffold146 TRF Tandem_Repeat 799891 799969 95 + . . scaffold146 TRF Tandem_Repeat 834738 834781 88 + . . scaffold146 TRF Tandem_Repeat 837124 837158 70 + . . scaffold146 GLEAN promoter 838937 839936 0.977393 + . ID=CGI_10024922; scaffold146 GLEAN mRNA 839937 845451 0.977393 + . ID=CGI_10024922; scaffold146 WUBlastX LTR_Gypsy 842599 842772 27 + . . scaffold146 TRF Tandem_Repeat 843790 844147 475 + . . scaffold146 GLEAN promoter 850677 851676 1 + . ID=CGI_10024923; scaffold146 GLEAN mRNA 851677 852722 1 + . ID=CGI_10024923; scaffold146 TRF Tandem_Repeat 853208 853265 86 + . . scaffold146 TRF Tandem_Repeat 853208 853265 82 + . . scaffold146 GLEAN promoter 864687 865686 0.999999 + . ID=CGI_10024924; scaffold146 GLEAN mRNA 865687 866382 0.999999 + . ID=CGI_10024924; scaffold146 TRF Tandem_Repeat 886207 887755 2306 + . . scaffold146 TRF Tandem_Repeat 886208 887755 2309 + . . scaffold146 GLEAN mRNA 897604 910749 0.805057 - . ID=CGI_10024925; scaffold146 TRF Tandem_Repeat 902962 903259 377 + . . scaffold146 TRF Tandem_Repeat 902986 903259 362 + . . scaffold146 GLEAN promoter 910750 911749 0.805057 - . ID=CGI_10024925; scaffold146 TRF Tandem_Repeat 912766 914259 1713 + . . scaffold146 TRF Tandem_Repeat 912766 914259 1645 + . . scaffold146 TRF Tandem_Repeat 919690 920579 1388 + . . scaffold146 TRF Tandem_Repeat 920978 921693 1218 + . . scaffold146 TRF Tandem_Repeat 922906 922932 54 + . . scaffold146 GLEAN mRNA 926941 935458 1 - . ID=CGI_10024926; scaffold146 GLEAN promoter 935459 936458 1 - . ID=CGI_10024926; scaffold146 TRF Tandem_Repeat 953730 953962 201 + . . scaffold146 TRF Tandem_Repeat 954303 954340 76 + . . scaffold146 TRF Tandem_Repeat 966177 966350 68 + . . scaffold146 WUBlastX DNA_PiggyBac 967013 967144 26 + . . scaffold146 WUBlastX DNA_PiggyBac 967161 967466 146 + . . scaffold146 WUBlastX DNA_PiggyBac 967215 967523 94 + . . scaffold146 WUBlastX DNA_PiggyBac 967774 968160 47 + . . scaffold146 WUBlastX DNA_PiggyBac 967926 968381 72 + . . scaffold146 WUBlastX DNA_PiggyBac 968035 968163 90 + . . scaffold146 WUBlastX DNA_PiggyBac 968166 968381 126 + . . scaffold146 GLEAN mRNA 975283 982093 0.894216 - . ID=CGI_10024927; scaffold146 TRF Tandem_Repeat 980205 980247 63 + . . scaffold146 GLEAN promoter 982094 983093 0.894216 - . ID=CGI_10024927; scaffold146 TRF Tandem_Repeat 989778 990907 1386 + . . scaffold146 TRF Tandem_Repeat 989822 990800 1389 + . . scaffold146 WUBlastX DNA_Harbinger 999927 1000064 61 + . . scaffold1460 WUBlastX LINE_RTE-X 4215 4457 27 + . . scaffold1460 WUBlastX LINE_RTE-BovB 4317 4466 29 + . . scaffold1460 WUBlastX LINE_RTE-BovB 4344 4457 34 + . . scaffold1460 WUBlastX LINE_RTE-X 4377 4559 50 + . . scaffold1460 WUBlastX LINE_RTE-X 4377 4451 53 + . . scaffold1460 WUBlastX LINE_L2 5289 5639 104 + . . scaffold1460 WUBlastX LINE_RTE-X 5385 6020 248 + . . scaffold1460 WUBlastX LINE_RTE-BovB 6046 6258 31 + . . scaffold1460 WUBlastX LINE_RTE-BovB 6052 6144 32 + . . scaffold1460 WUBlastX LTR_Gypsy 7663 8913 292 + . . scaffold1460 WUBlastX LTR_Gypsy 8035 9120 805 + . . scaffold1460 WUBlastX LTR_Gypsy 9258 9392 21 + . . scaffold1460 GLEAN mRNA 19265 19414 0.743981 - . ID=CGI_10004189; scaffold1460 GLEAN promoter 19415 20414 0.743981 - . ID=CGI_10004189; scaffold1460 GLEAN mRNA 19452 19772 0.592126 - . ID=CGI_10004190; scaffold1460 GLEAN promoter 19773 20772 0.592126 - . ID=CGI_10004190; scaffold1460 TRF Tandem_Repeat 25212 25257 92 + . . scaffold1460 TRF Tandem_Repeat 38853 38888 54 + . . scaffold1460 TRF Tandem_Repeat 52742 52793 104 + . . scaffold1460 TRF Tandem_Repeat 56331 56356 52 + . . scaffold1460 TRF Tandem_Repeat 56612 56709 142 + . . scaffold1460 TRF Tandem_Repeat 56612 56709 142 + . . scaffold1460 TRF Tandem_Repeat 58082 58127 56 + . . scaffold1460 GLEAN mRNA 62681 63316 0.649574 - . ID=CGI_10004191; scaffold1460 GLEAN promoter 63317 64316 0.649574 - . ID=CGI_10004191; scaffold1460 TRF Tandem_Repeat 63648 63715 118 + . . scaffold1460 TRF Tandem_Repeat 76980 77039 84 + . . scaffold1460 TRF Tandem_Repeat 82280 82306 54 + . . scaffold1460 TRF Tandem_Repeat 84818 84844 54 + . . scaffold1460 TRF Tandem_Repeat 84892 84935 88 + . . scaffold1461 GLEAN mRNA 864 5170 0.982142 - . ID=CGI_10000768; scaffold1461 GLEAN promoter 5171 6170 0.982142 - . ID=CGI_10000768; scaffold1461 GLEAN promoter 5974 6973 1 + . ID=CGI_10000769; scaffold1461 GLEAN mRNA 6974 9606 1 + . ID=CGI_10000769; scaffold1462 WUBlastX LINE_L1-Tx1 9 173 59 - . . scaffold1462 WUBlastX LINE_CR1-L2 1457 1597 32 - . . scaffold1462 WUBlastX LINE_L2 1624 2067 95 - . . scaffold1462 WUBlastX LINE_L2 1627 2226 80 - . . scaffold1462 TRF Tandem_Repeat 3061 3645 1026 + . . scaffold1462 TRF Tandem_Repeat 3066 3797 580 + . . scaffold1462 WUBlastX RC_Helitron 5865 5915 25 + . . scaffold1462 WUBlastX RC_Helitron 5940 6515 115 + . . scaffold1462 WUBlastX RC_Helitron 6468 7463 243 + . . scaffold1462 WUBlastX RC_Helitron 6705 9761 1896 + . . scaffold1462 WUBlastX RC_Helitron 6996 10430 1296 + . . scaffold1462 WUBlastX RC_Helitron 9411 12065 1241 + . . scaffold1462 GLEAN promoter 11242 12241 0.989061 + . ID=CGI_10014371; scaffold1462 GLEAN mRNA 12242 13238 0.989061 + . ID=CGI_10014371; scaffold1462 TRF Tandem_Repeat 37975 38029 110 + . . scaffold1462 TRF Tandem_Repeat 51902 51934 52 + . . scaffold1462 TRF Tandem_Repeat 58141 58186 83 + . . scaffold1462 TRF Tandem_Repeat 70039 70083 90 + . . scaffold1462 TRF Tandem_Repeat 95374 95417 88 + . . scaffold1462 TRF Tandem_Repeat 99429 99469 66 + . . scaffold1462 TRF Tandem_Repeat 104947 105003 114 + . . scaffold1462 TRF Tandem_Repeat 111908 111954 58 + . . scaffold1462 TRF Tandem_Repeat 111920 111963 54 + . . scaffold1462 TRF Tandem_Repeat 113614 113640 54 + . . scaffold1462 GLEAN promoter 125068 126067 0.382353 + . ID=CGI_10014372; scaffold1462 GLEAN mRNA 126068 169270 0.382353 + . ID=CGI_10014372; scaffold1462 WUBlastX DNA_Zator 134344 136353 1133 + . . scaffold1462 WUBlastX DNA_Zator 137249 137395 107 + . . scaffold1462 WUBlastX DNA_Zator 137492 138046 101 + . . scaffold1462 TRF Tandem_Repeat 138778 138903 173 + . . scaffold1462 TRF Tandem_Repeat 146023 146049 54 + . . scaffold1462 TRF Tandem_Repeat 158448 158558 138 + . . scaffold1462 WUBlastX LINE_L2 159367 159561 71 - . . scaffold1462 WUBlastX LINE_L2 159480 159701 117 - . . scaffold1462 WUBlastX LINE_L2 159567 159827 25 - . . scaffold1462 WUBlastX LINE_L2 159567 159752 104 - . . scaffold1462 WUBlastX LINE_RTE-X 192182 192586 71 + . . scaffold1462 WUBlastX LINE_RTE-X 192272 192703 34 + . . scaffold1462 TRF Tandem_Repeat 193212 193254 77 + . . scaffold1462 GLEAN mRNA 193361 197973 0.776235 - . ID=CGI_10014373; scaffold1462 GLEAN promoter 197974 198973 0.776235 - . ID=CGI_10014373; scaffold1462 GLEAN mRNA 198280 200171 0.999337 - . ID=CGI_10014374; scaffold1462 GLEAN promoter 200172 201171 0.999337 - . ID=CGI_10014374; scaffold1462 TRF Tandem_Repeat 206735 206791 105 + . . scaffold1462 TRF Tandem_Repeat 207774 207800 54 + . . scaffold1462 WUBlastX LINE_RTE-BovB 213261 214724 1074 - . . scaffold1462 WUBlastX LINE_RTE-BovB 214712 215557 346 - . . scaffold1462 TRF Tandem_Repeat 217704 217738 61 + . . scaffold1462 WUBlastX LINE_RTE-X 219473 219661 26 - . . scaffold1462 WUBlastX LINE_RTE-X 219584 219646 32 - . . scaffold1462 WUBlastX LINE_RTE-X 219666 219842 54 - . . scaffold1462 WUBlastX LINE_RTE-X 220360 221001 72 - . . scaffold1462 WUBlastX LINE_RTE-X 220591 221001 81 - . . scaffold1462 WUBlastX LINE_RTE-X 220710 221078 30 - . . scaffold1462 WUBlastX LINE_RTE-X 220831 221001 86 - . . scaffold1462 WUBlastX LINE_RTE-BovB 221413 221511 83 - . . scaffold1462 TRF Tandem_Repeat 222382 222420 78 + . . scaffold1462 GLEAN mRNA 224256 226036 0.379826 - . ID=CGI_10014375; scaffold1462 GLEAN promoter 224636 225635 1 + . ID=CGI_10014376; scaffold1462 GLEAN mRNA 225636 234862 1 + . ID=CGI_10014376; scaffold1462 GLEAN promoter 226037 227036 0.379826 - . ID=CGI_10014375; scaffold1462 TRF Tandem_Repeat 229491 229547 114 + . . scaffold1462 TRF Tandem_Repeat 232997 233027 62 + . . scaffold1462 TRF Tandem_Repeat 233622 234602 1179 + . . scaffold1462 TRF Tandem_Repeat 238489 238514 52 + . . scaffold1462 GLEAN mRNA 239144 245171 1 - . ID=CGI_10014377; scaffold1462 GLEAN promoter 244714 245713 1 + . ID=CGI_10014378; scaffold1462 GLEAN promoter 245172 246171 1 - . ID=CGI_10014377; scaffold1462 GLEAN mRNA 245714 261379 1 + . ID=CGI_10014378; scaffold1462 TRF Tandem_Repeat 255086 255113 56 + . . scaffold1462 TRF Tandem_Repeat 255579 257920 2473 + . . scaffold1462 TRF Tandem_Repeat 255595 257920 2447 + . . scaffold1462 TRF Tandem_Repeat 256402 257920 2253 + . . scaffold1462 TRF Tandem_Repeat 258090 258163 69 + . . scaffold1462 GLEAN promoter 268295 269294 0.584044 + . ID=CGI_10014379; scaffold1462 GLEAN mRNA 269295 278456 0.584044 + . ID=CGI_10014379; scaffold1462 TRF Tandem_Repeat 278573 278702 217 + . . scaffold1462 GLEAN mRNA 279210 285237 0.918701 - . ID=CGI_10014380; scaffold1462 GLEAN promoter 285238 286237 0.918701 - . ID=CGI_10014380; scaffold1462 GLEAN promoter 285324 286323 0.99818 + . ID=CGI_10014381; scaffold1462 GLEAN mRNA 286324 290035 0.99818 + . ID=CGI_10014381; scaffold1462 GLEAN mRNA 291893 294676 0.734569 - . ID=CGI_10014382; scaffold1462 GLEAN promoter 294677 295676 0.734569 - . ID=CGI_10014382; scaffold1462 TRF Tandem_Repeat 305608 305635 56 + . . scaffold1462 GLEAN mRNA 305995 331618 0.999054 - . ID=CGI_10014383; scaffold1462 WUBlastX LINE_RTE-BovB 306305 306391 53 + . . scaffold1462 WUBlastX LINE_RTE-BovB 306404 306730 49 + . . scaffold1462 WUBlastX LINE_RTE-BovB 306593 306739 70 + . . scaffold1462 WUBlastX LINE_RTE-BovB 306724 306948 90 + . . scaffold1462 TRF Tandem_Repeat 325355 325408 99 + . . scaffold1462 TRF Tandem_Repeat 326753 326793 82 + . . scaffold1462 GLEAN promoter 331619 332618 0.999054 - . ID=CGI_10014383; scaffold1462 GLEAN promoter 337212 338211 0.999888 + . ID=CGI_10014384; scaffold1462 GLEAN mRNA 338212 346400 0.999888 + . ID=CGI_10014384; scaffold1462 GLEAN promoter 347326 348325 0.995853 + . ID=CGI_10014386; scaffold1462 GLEAN mRNA 347678 348043 0.733278 - . ID=CGI_10014385; scaffold1462 GLEAN promoter 348044 349043 0.733278 - . ID=CGI_10014385; scaffold1462 GLEAN mRNA 348326 383431 0.995853 + . ID=CGI_10014386; scaffold1462 WUBlastX DNA_Maverick 348403 349026 409 - . . scaffold1462 TRF Tandem_Repeat 355000 355048 50 + . . scaffold1462 WUBlastX DNA_Harbinger 359430 359543 68 - . . scaffold1462 WUBlastX DNA_Harbinger 359533 359664 32 - . . scaffold1462 GLEAN mRNA 365331 374649 0.539656 - . ID=CGI_10014387; scaffold1462 WUBlastX RC_Helitron 367149 371852 2664 - . . scaffold1462 WUBlastX RC_Helitron 372375 372995 374 - . . scaffold1462 TRF Tandem_Repeat 373075 374090 1892 + . . scaffold1462 TRF Tandem_Repeat 373087 374090 1085 + . . scaffold1462 GLEAN promoter 374650 375649 0.539656 - . ID=CGI_10014387; scaffold1462 TRF Tandem_Repeat 378762 378820 109 + . . scaffold1462 GLEAN mRNA 381344 388860 0.999999 - . ID=CGI_10014388; scaffold1462 GLEAN promoter 388861 389860 0.999999 - . ID=CGI_10014388; scaffold1462 WUBlastX LTR_DIRS 390161 390613 115 + . . scaffold1462 WUBlastX LTR_DIRS 390796 391092 122 + . . scaffold1462 WUBlastX LTR_DIRS 391137 391238 27 + . . scaffold1462 WUBlastX LTR_DIRS 391216 392001 88 + . . scaffold1462 WUBlastX LTR_DIRS 391971 392312 139 + . . scaffold1462 WUBlastX LTR_DIRS 392380 392430 24 + . . scaffold1462 WUBlastX DNA_TcMar-Fot1 393427 394467 276 - . . scaffold1462 WUBlastX DNA_TcMar-Fot1 394033 394575 21 - . . scaffold1462 GLEAN promoter 395186 396185 0.759958 + . ID=CGI_10014389; scaffold1462 WUBlastX DNA_IS4EU 396186 396497 54 + . . scaffold1462 GLEAN mRNA 396186 396948 0.759958 + . ID=CGI_10014389; scaffold1462 WUBlastX DNA_IS4EU 397216 397389 45 + . . scaffold1463 GLEAN mRNA 245 3439 0.99567 - . ID=CGI_10000860; scaffold1463 GLEAN promoter 3440 4439 0.99567 - . ID=CGI_10000860; scaffold1464 GLEAN promoter 479 1478 0.549445 + . ID=CGI_10003234; scaffold1464 GLEAN mRNA 1479 25035 0.549445 + . ID=CGI_10003234; scaffold1464 WUBlastX LTR_Gypsy 2336 2596 78 + . . scaffold1464 WUBlastX LTR_Gypsy 2378 2596 88 + . . scaffold1464 WUBlastX LTR_Gypsy 2423 2977 235 + . . scaffold1464 WUBlastX LTR_Gypsy 2558 2998 303 + . . scaffold1464 WUBlastX LTR_Gypsy 2980 3441 314 + . . scaffold1464 WUBlastX LTR_Gypsy 3016 3591 187 + . . scaffold1464 WUBlastX LINE_Penelope 6982 7284 31 - . . scaffold1464 GLEAN mRNA 10282 13662 0.623128 - . ID=CGI_10003235; scaffold1464 GLEAN promoter 13663 14662 0.623128 - . ID=CGI_10003235; scaffold1464 WUBlastX DNA_TcMar-Tc1 25099 25500 52 + . . scaffold1464 WUBlastX LINE_RTE-X 26690 28663 604 - . . scaffold1464 WUBlastX LINE_RTE-X 27377 28975 445 - . . scaffold1464 GLEAN mRNA 33337 33822 0.990797 - . ID=CGI_10003236; scaffold1464 GLEAN promoter 33823 34822 0.990797 - . ID=CGI_10003236; scaffold1464 TRF Tandem_Repeat 36760 36795 72 + . . scaffold1464 GLEAN promoter 37427 38426 1 + . ID=CGI_10003237; scaffold1464 GLEAN mRNA 38427 41614 1 + . ID=CGI_10003237; scaffold1464 TRF Tandem_Repeat 44202 44275 148 + . . scaffold1464 GLEAN promoter 47015 48014 1 + . ID=CGI_10003238; scaffold1464 GLEAN mRNA 48015 63687 1 + . ID=CGI_10003238; scaffold1464 TRF Tandem_Repeat 49012 49049 76 + . . scaffold1464 TRF Tandem_Repeat 53124 53183 120 + . . scaffold1464 TRF Tandem_Repeat 61710 61750 82 + . . scaffold1466 GLEAN promoter 3367 4366 1 + . ID=CGI_10002217; scaffold1466 GLEAN mRNA 4367 6119 1 + . ID=CGI_10002217; scaffold1466 GLEAN mRNA 7308 13341 0.999676 - . ID=CGI_10002218; scaffold1466 GLEAN promoter 13342 14341 0.999676 - . ID=CGI_10002218; scaffold1466 GLEAN promoter 17254 18253 0.999907 + . ID=CGI_10002219; scaffold1466 GLEAN mRNA 18254 25852 0.999907 + . ID=CGI_10002219; scaffold1466 GLEAN promoter 26351 27350 0.999907 + . ID=CGI_10002220; scaffold1466 GLEAN mRNA 27351 38197 0.999907 + . ID=CGI_10002220; scaffold1467 WUBlastX LINE_R2-Hero 3902 4090 22 - . . scaffold1467 WUBlastX LINE_R2-Hero 3963 4220 76 - . . scaffold1467 WUBlastX LINE_R2-Hero 4231 4506 170 - . . scaffold1467 WUBlastX LINE_R2-Hero 4528 4815 180 - . . scaffold1467 WUBlastX LINE_R2-Hero 4791 4889 37 - . . scaffold1467 WUBlastX LINE_R2-Hero 4791 4868 37 - . . scaffold1467 GLEAN mRNA 9191 22169 0.999624 - . ID=CGI_10005083; scaffold1467 TRF Tandem_Repeat 10390 10423 50 + . . scaffold1467 TRF Tandem_Repeat 10393 10436 70 + . . scaffold1467 TRF Tandem_Repeat 15513 15546 52 + . . scaffold1467 GLEAN promoter 22170 23169 0.999624 - . ID=CGI_10005083; scaffold1467 GLEAN promoter 25835 26834 0.993907 + . ID=CGI_10005084; scaffold1467 GLEAN mRNA 26835 30696 0.993907 + . ID=CGI_10005084; scaffold1467 TRF Tandem_Repeat 31769 31795 54 + . . scaffold1467 GLEAN mRNA 37030 41556 1 - . ID=CGI_10005085; scaffold1467 GLEAN promoter 41280 42279 1 + . ID=CGI_10005086; scaffold1467 GLEAN promoter 41557 42556 1 - . ID=CGI_10005085; scaffold1467 GLEAN mRNA 42280 48376 1 + . ID=CGI_10005086; scaffold1467 GLEAN mRNA 55462 87462 0.835967 - . ID=CGI_10005087; scaffold1467 TRF Tandem_Repeat 81044 81070 54 + . . scaffold1467 GLEAN promoter 87463 88462 0.835967 - . ID=CGI_10005087; scaffold1467 TRF Tandem_Repeat 90846 91026 290 + . . scaffold1467 TRF Tandem_Repeat 97121 97273 162 + . . scaffold1467 GLEAN promoter 106836 107835 1 + . ID=CGI_10005088; scaffold1467 GLEAN mRNA 107836 110824 1 + . ID=CGI_10005088; scaffold1467 GLEAN mRNA 111172 118546 0.74778 - . ID=CGI_10005089; scaffold1467 TRF Tandem_Repeat 113436 113467 64 + . . scaffold1467 TRF Tandem_Repeat 113971 114004 59 + . . scaffold1467 TRF Tandem_Repeat 114754 115554 1284 + . . scaffold1467 GLEAN promoter 118547 119238 0.74778 - . ID=CGI_10005089; scaffold1468 GLEAN promoter 1 59 0.419867 + . ID=CGI_10006767; scaffold1468 GLEAN mRNA 60 17541 0.419867 + . ID=CGI_10006767; scaffold1468 TRF Tandem_Repeat 22710 22762 99 + . . scaffold1468 GLEAN promoter 28324 29323 0.989268 + . ID=CGI_10006768; scaffold1468 GLEAN mRNA 29324 39297 0.989268 + . ID=CGI_10006768; scaffold1468 GLEAN mRNA 36122 36328 0.618241 - . ID=CGI_10006769; scaffold1468 GLEAN promoter 36329 37328 0.618241 - . ID=CGI_10006769; scaffold1468 GLEAN mRNA 49345 57623 0.734544 - . ID=CGI_10006770; scaffold1468 TRF Tandem_Repeat 53913 54506 750 + . . scaffold1468 TRF Tandem_Repeat 53913 54506 713 + . . scaffold1468 TRF Tandem_Repeat 53925 54506 832 + . . scaffold1468 GLEAN promoter 57111 58110 0.950065 + . ID=CGI_10006771; scaffold1468 GLEAN promoter 57624 58623 0.734544 - . ID=CGI_10006770; scaffold1468 GLEAN mRNA 58111 59568 0.950065 + . ID=CGI_10006771; scaffold1468 GLEAN promoter 61225 62224 0.950065 + . ID=CGI_10006772; scaffold1468 GLEAN mRNA 62225 70726 0.950065 + . ID=CGI_10006772; scaffold1468 GLEAN mRNA 71298 77750 0.982896 - . ID=CGI_10006773; scaffold1468 GLEAN promoter 77751 78750 0.982896 - . ID=CGI_10006773; scaffold1468 GLEAN mRNA 77764 82827 0.998712 - . ID=CGI_10006774; scaffold1468 GLEAN promoter 82828 83827 0.998712 - . ID=CGI_10006774; scaffold1468 TRF Tandem_Repeat 85053 85077 50 + . . scaffold1468 TRF Tandem_Repeat 87514 87568 110 + . . scaffold1468 GLEAN promoter 88053 89052 1 + . ID=CGI_10006775; scaffold1468 GLEAN mRNA 89053 92698 1 + . ID=CGI_10006775; scaffold1468 GLEAN mRNA 92828 98239 0.999282 - . ID=CGI_10006776; scaffold1468 GLEAN promoter 98240 99239 0.999282 - . ID=CGI_10006776; scaffold1468 GLEAN mRNA 106632 107297 0.999999 - . ID=CGI_10006777; scaffold1468 GLEAN promoter 107298 108297 0.999999 - . ID=CGI_10006777; scaffold1468 GLEAN promoter 114274 115273 0.996753 + . ID=CGI_10006778; scaffold1468 GLEAN mRNA 115274 117109 0.996753 + . ID=CGI_10006778; scaffold1468 TRF Tandem_Repeat 120543 120596 108 + . . scaffold1468 GLEAN mRNA 128001 128678 0.999375 - . ID=CGI_10006779; scaffold1468 GLEAN promoter 128679 129678 0.999375 - . ID=CGI_10006779; scaffold1468 TRF Tandem_Repeat 130281 130364 168 + . . scaffold1468 TRF Tandem_Repeat 132599 132637 78 + . . scaffold1468 GLEAN promoter 134686 135685 0.815837 + . ID=CGI_10006780; scaffold1468 TRF Tandem_Repeat 135306 135347 75 + . . scaffold1468 GLEAN mRNA 135686 143525 0.815837 + . ID=CGI_10006780; scaffold1468 TRF Tandem_Repeat 142167 142193 54 + . . scaffold1468 WUBlastX LINE_RTE-X 147137 147673 73 + . . scaffold1468 WUBlastX LINE_RTE-X 147242 147514 94 + . . scaffold1468 TRF Tandem_Repeat 150542 150587 92 + . . scaffold1469 WUBlastX DNA_Crypton 8487 9080 74 + . . scaffold1469 WUBlastX DNA_Crypton 9047 9418 100 + . . scaffold1469 WUBlastX DNA_Crypton 9083 9496 40 + . . scaffold1469 TRF Tandem_Repeat 11556 11592 56 + . . scaffold1469 TRF Tandem_Repeat 20837 20894 64 + . . scaffold1469 TRF Tandem_Repeat 20842 20881 53 + . . scaffold1469 GLEAN promoter 21725 22724 0.999999 + . ID=CGI_10015409; scaffold1469 GLEAN mRNA 22725 23003 0.999999 + . ID=CGI_10015409; scaffold1469 TRF Tandem_Repeat 27905 27945 82 + . . scaffold1469 TRF Tandem_Repeat 29483 29509 54 + . . scaffold1469 WUBlastX DNA_Harbinger 29525 29641 70 + . . scaffold1469 WUBlastX DNA_Harbinger 29635 29706 41 + . . scaffold1469 TRF Tandem_Repeat 34885 35458 760 + . . scaffold1469 TRF Tandem_Repeat 35772 36754 1308 + . . scaffold1469 TRF Tandem_Repeat 38298 38345 96 + . . scaffold1469 WUBlastX DNA_Kolobok-IS4 39295 39849 77 + . . scaffold1469 WUBlastX DNA_IS4EU 39445 39837 87 + . . scaffold1469 WUBlastX DNA_IS4EU 40369 40584 34 + . . scaffold1469 WUBlastX DNA_Kolobok-IS4 40432 41505 124 + . . scaffold1469 WUBlastX DNA_IS4EU 40828 41511 164 + . . scaffold1469 WUBlastX DNA_Kolobok-IS4 42654 43781 551 - . . scaffold1469 WUBlastX DNA_Kolobok-IS4 44506 44766 50 - . . scaffold1469 WUBlastX DNA_IS4EU 44539 44826 31 - . . scaffold1469 GLEAN promoter 46455 47454 0.887057 + . ID=CGI_10015410; scaffold1469 GLEAN mRNA 47455 52515 0.887057 + . ID=CGI_10015410; scaffold1469 GLEAN promoter 53546 54545 0.54485 + . ID=CGI_10015411; scaffold1469 GLEAN mRNA 54546 70396 0.54485 + . ID=CGI_10015411; scaffold1469 TRF Tandem_Repeat 65454 65604 230 + . . scaffold1469 WUBlastX LINE_RTE-BovB 70723 70863 68 - . . scaffold1469 WUBlastX LINE_RTE-BovB 70943 71059 65 - . . scaffold1469 TRF Tandem_Repeat 78095 78138 88 + . . scaffold1469 GLEAN promoter 96762 97761 1 + . ID=CGI_10015412; scaffold1469 GLEAN mRNA 97762 98911 1 + . ID=CGI_10015412; scaffold1469 TRF Tandem_Repeat 104714 104764 102 + . . scaffold1469 TRF Tandem_Repeat 110596 110657 124 + . . scaffold1469 GLEAN mRNA 112943 113137 0.733495 - . ID=CGI_10015413; scaffold1469 GLEAN promoter 113138 114137 0.733495 - . ID=CGI_10015413; scaffold1469 TRF Tandem_Repeat 114006 114035 60 + . . scaffold1469 TRF Tandem_Repeat 115914 116075 177 + . . scaffold1469 TRF Tandem_Repeat 116084 116264 193 + . . scaffold1469 GLEAN promoter 117979 118978 0.358465 + . ID=CGI_10015414; scaffold1469 GLEAN mRNA 118979 165008 0.358465 + . ID=CGI_10015414; scaffold1469 TRF Tandem_Repeat 123561 123628 136 + . . scaffold1469 TRF Tandem_Repeat 129749 129800 104 + . . scaffold1469 TRF Tandem_Repeat 155351 155393 86 + . . scaffold1469 TRF Tandem_Repeat 168513 168545 66 + . . scaffold1469 GLEAN mRNA 203236 210089 0.937149 - . ID=CGI_10015415; scaffold1469 GLEAN promoter 210090 211089 0.937149 - . ID=CGI_10015415; scaffold1469 GLEAN promoter 214031 215030 0.99777 + . ID=CGI_10015416; scaffold1469 GLEAN mRNA 215031 229509 0.99777 + . ID=CGI_10015416; scaffold1469 GLEAN mRNA 232877 233230 0.997706 - . ID=CGI_10015417; scaffold1469 GLEAN promoter 233231 234230 0.997706 - . ID=CGI_10015417; scaffold1469 GLEAN mRNA 233617 244603 0.973044 - . ID=CGI_10015418; scaffold1469 TRF Tandem_Repeat 241606 242149 633 + . . scaffold1469 GLEAN promoter 244604 245603 0.973044 - . ID=CGI_10015418; scaffold1469 GLEAN mRNA 245495 247569 1 - . ID=CGI_10015419; scaffold1469 GLEAN promoter 247570 248569 1 - . ID=CGI_10015419; scaffold1469 GLEAN mRNA 249571 254057 1 - . ID=CGI_10015420; scaffold1469 TRF Tandem_Repeat 253606 253638 57 + . . scaffold1469 GLEAN promoter 254058 255057 1 - . ID=CGI_10015420; scaffold1469 GLEAN mRNA 254628 255338 1 - . ID=CGI_10015421; scaffold1469 GLEAN promoter 255339 256338 1 - . ID=CGI_10015421; scaffold1469 GLEAN mRNA 255819 268242 1 - . ID=CGI_10015422; scaffold1469 TRF Tandem_Repeat 256703 257957 1468 + . . scaffold1469 TRF Tandem_Repeat 256703 257957 1396 + . . scaffold1469 GLEAN promoter 268243 269242 1 - . ID=CGI_10015422; scaffold1469 TRF Tandem_Repeat 269605 269643 78 + . . scaffold1469 GLEAN promoter 269993 270992 0.999892 + . ID=CGI_10015423; scaffold1469 GLEAN mRNA 270993 288861 0.999892 + . ID=CGI_10015423; scaffold1469 GLEAN promoter 292421 293420 0.989551 + . ID=CGI_10015424; scaffold1469 GLEAN mRNA 293421 294650 0.989551 + . ID=CGI_10015424; scaffold1469 GLEAN promoter 296804 297803 1 + . ID=CGI_10015425; scaffold1469 GLEAN mRNA 297804 306022 1 + . ID=CGI_10015425; scaffold1469 TRF Tandem_Repeat 303013 303055 86 + . . scaffold1469 TRF Tandem_Repeat 309678 309711 68 + . . scaffold1469 WUBlastX LINE_R2-Hero 311095 311367 73 - . . scaffold1469 TRF Tandem_Repeat 311819 311934 133 + . . scaffold1469 TRF Tandem_Repeat 312229 312345 65 + . . scaffold1469 GLEAN promoter 313618 314617 0.999999 + . ID=CGI_10015426; scaffold1469 GLEAN mRNA 314618 317382 0.999999 + . ID=CGI_10015426; scaffold1469 GLEAN mRNA 322924 327672 1 - . ID=CGI_10015427; scaffold1469 GLEAN promoter 327673 328672 1 - . ID=CGI_10015427; scaffold1469 TRF Tandem_Repeat 327770 327918 217 + . . scaffold1469 GLEAN mRNA 328132 363409 0.937512 - . ID=CGI_10015428; scaffold1469 WUBlastX DNA_Zator 331240 334059 1412 + . . scaffold1469 WUBlastX DNA_Zator 334210 334389 64 + . . scaffold1469 WUBlastX DNA_Zator 334853 335020 51 + . . scaffold1469 GLEAN promoter 363410 364409 0.937512 - . ID=CGI_10015428; scaffold1469 TRF Tandem_Repeat 367830 368639 746 + . . scaffold1469 TRF Tandem_Repeat 370072 370129 82 + . . scaffold1469 TRF Tandem_Repeat 381679 381718 71 + . . scaffold1469 WUBlastX LINE_RTE-X 396258 396914 405 + . . scaffold1469 WUBlastX LINE_RTE-X 396986 397126 32 + . . scaffold1470 GLEAN mRNA 18 1592 1 - . ID=CGI_10003540; scaffold1470 GLEAN promoter 1593 2592 1 - . ID=CGI_10003540; scaffold1470 GLEAN mRNA 2893 9683 1 - . ID=CGI_10003541; scaffold1470 TRF Tandem_Repeat 3477 3802 481 + . . scaffold1470 TRF Tandem_Repeat 3477 3802 471 + . . scaffold1470 GLEAN promoter 9684 10683 1 - . ID=CGI_10003541; scaffold1470 WUBlastX LTR_Ngaro 45775 46410 111 + . . scaffold1470 WUBlastX LTR_Ngaro 45832 46332 289 + . . scaffold1470 WUBlastX LTR_Ngaro 46337 46453 65 + . . scaffold1470 WUBlastX LTR_Ngaro 50756 51115 76 + . . scaffold1470 WUBlastX LTR_Ngaro 50885 51115 97 + . . scaffold1470 WUBlastX LTR_Ngaro 51147 51323 35 + . . scaffold1470 WUBlastX LINE_L1-Tx1 53333 53608 27 - . . scaffold1470 WUBlastX LINE_L1 53474 53731 37 - . . scaffold1470 WUBlastX LINE_L1-Tx1 53823 54656 170 - . . scaffold1470 WUBlastX LINE_L1 54434 54943 193 - . . scaffold1470 WUBlastX LINE_L1-Tx1 54949 55707 181 - . . scaffold1470 WUBlastX LINE_L1-Tx1 55676 56332 161 - . . scaffold1470 TRF Tandem_Repeat 56391 56424 50 + . . scaffold1470 WUBlastX LTR_Ngaro 66732 67508 162 + . . scaffold1470 WUBlastX LTR_Ngaro 67014 67688 162 + . . scaffold1470 WUBlastX LTR_Ngaro 67807 69393 1087 + . . scaffold1470 WUBlastX LTR_Ngaro 69300 70277 391 + . . scaffold1471 TRF Tandem_Repeat 6366 6419 67 + . . scaffold1471 TRF Tandem_Repeat 6370 6428 82 + . . scaffold1471 TRF Tandem_Repeat 7478 7601 221 + . . scaffold1471 TRF Tandem_Repeat 7478 7554 59 + . . scaffold1471 WUBlastX DNA_IS4EU 11942 12199 21 + . . scaffold1471 WUBlastX DNA_IS4EU 12287 12538 141 + . . scaffold1471 WUBlastX DNA_Kolobok-IS4 12535 12582 32 + . . scaffold1472 GLEAN promoter 1 21 0.999676 + . ID=CGI_10001021; scaffold1472 GLEAN mRNA 22 7807 0.999676 + . ID=CGI_10001021; scaffold1472 GLEAN mRNA 9065 10013 1 - . ID=CGI_10001022; scaffold1472 GLEAN promoter 10014 11013 1 - . ID=CGI_10001022; scaffold1473 WUBlastX LINE_CR1 892 942 26 + . . scaffold1473 WUBlastX LINE_RTE-X 1514 3049 702 + . . scaffold1473 WUBlastX LINE_RTE-X 3051 3908 176 + . . scaffold1473 WUBlastX LINE_RTE-X 3075 3779 189 + . . scaffold1473 GLEAN promoter 12162 13161 0.99911 + . ID=CGI_10003509; scaffold1473 GLEAN mRNA 13162 33966 0.99911 + . ID=CGI_10003509; scaffold1473 WUBlastX LINE_L1-Tx1 15282 15560 71 - . . scaffold1473 WUBlastX LINE_L1 15348 15608 58 - . . scaffold1473 WUBlastX LINE_L2 17173 17445 81 - . . scaffold1473 WUBlastX LINE_L2 17173 17502 68 - . . scaffold1473 WUBlastX LINE_L2 17176 17586 37 - . . scaffold1473 TRF Tandem_Repeat 18337 18434 169 + . . scaffold1473 WUBlastX LINE_L2 18659 19012 61 - . . scaffold1473 WUBlastX LINE_L2 18668 18952 90 - . . scaffold1473 WUBlastX LINE_L2 18973 19476 26 - . . scaffold1473 WUBlastX LINE_L2 19105 19857 127 - . . scaffold1473 TRF Tandem_Repeat 33582 33664 166 + . . scaffold1473 GLEAN promoter 35371 36370 0.999114 + . ID=CGI_10003510; scaffold1473 GLEAN mRNA 36371 40501 0.999114 + . ID=CGI_10003510; scaffold1473 WUBlastX LINE_L1 67701 67787 34 - . . scaffold1473 WUBlastX LINE_L1-Tx1 67837 68214 97 - . . scaffold1473 TRF Tandem_Repeat 70125 70258 97 + . . scaffold1473 TRF Tandem_Repeat 71253 71393 104 + . . scaffold1473 TRF Tandem_Repeat 71796 71862 71 + . . scaffold1473 WUBlastX LTR_Gypsy-Cigr 72332 72691 62 + . . scaffold1473 WUBlastX LTR_Gypsy-Cigr 72455 72724 71 + . . scaffold1473 WUBlastX LTR_Gypsy 72717 73787 107 + . . scaffold1473 WUBlastX LTR_Gypsy-Cigr 73335 74990 873 + . . scaffold1473 WUBlastX LTR_Gypsy 74268 75230 441 + . . scaffold1474 TRF Tandem_Repeat 4881 5211 359 + . . scaffold1474 TRF Tandem_Repeat 4881 5211 329 + . . scaffold1474 TRF Tandem_Repeat 4901 5208 301 + . . scaffold1474 TRF Tandem_Repeat 5267 5430 231 + . . scaffold1474 WUBlastX LTR_Ngaro 7882 8691 159 + . . scaffold1474 WUBlastX LTR_Ngaro 8683 8856 27 + . . scaffold1474 WUBlastX LTR_Ngaro 8725 8856 51 + . . scaffold1474 WUBlastX LTR_Ngaro 8855 8959 33 + . . scaffold1474 WUBlastX LTR_Ngaro 8986 9558 121 + . . scaffold1474 WUBlastX LTR_Ngaro 9112 9486 126 + . . scaffold1474 GLEAN mRNA 14998 15210 0.529364 - . ID=CGI_10001202; scaffold1474 GLEAN promoter 15211 16210 0.529364 - . ID=CGI_10001202; scaffold1475 GLEAN promoter 1 316 0.997946 + . ID=CGI_10005949; scaffold1475 GLEAN mRNA 317 8048 0.997946 + . ID=CGI_10005949; scaffold1475 GLEAN promoter 10094 11093 0.733495 + . ID=CGI_10005950; scaffold1475 GLEAN mRNA 11094 11384 0.733495 + . ID=CGI_10005950; scaffold1475 GLEAN promoter 11125 12124 0.99953 + . ID=CGI_10005951; scaffold1475 GLEAN mRNA 12125 23000 0.99953 + . ID=CGI_10005951; scaffold1475 TRF Tandem_Repeat 25799 25849 61 + . . scaffold1475 TRF Tandem_Repeat 35658 35718 122 + . . scaffold1475 GLEAN mRNA 66440 67543 0.668023 - . ID=CGI_10005952; scaffold1475 TRF Tandem_Repeat 66447 66495 98 + . . scaffold1475 GLEAN promoter 67544 68543 0.668023 - . ID=CGI_10005952; scaffold1475 WUBlastX LINE_L1-Tx1 84970 85173 23 - . . scaffold1475 WUBlastX LINE_L1-Tx1 85018 85221 48 - . . scaffold1475 TRF Tandem_Repeat 85223 85265 50 + . . scaffold1475 WUBlastX LINE_L1 85602 86249 55 - . . scaffold1475 WUBlastX LINE_L1-Tx1 85731 86243 154 - . . scaffold1475 WUBlastX LINE_L1-Tx1 85824 86291 242 - . . scaffold1475 WUBlastX LINE_L1-Tx1 86240 86722 102 - . . scaffold1475 WUBlastX LINE_L1 86627 86770 44 - . . scaffold1475 WUBlastX LINE_L1 86697 86948 32 - . . scaffold1475 WUBlastX LINE_L1 86914 87078 77 - . . scaffold1475 WUBlastX LINE_L1-Tx1 86953 87144 68 - . . scaffold1475 WUBlastX LINE_L1 86959 87192 57 - . . scaffold1475 WUBlastX LINE_L1-Tx1 87117 87221 28 - . . scaffold1475 WUBlastX LINE_L1 87137 87454 21 - . . scaffold1475 WUBlastX LINE_L1-Tx1 87308 87469 41 - . . scaffold1475 WUBlastX LINE_L1 87484 87714 39 - . . scaffold1475 WUBlastX LINE_L1-Tx1 87487 87759 27 - . . scaffold1475 WUBlastX LINE_L1-Tx1 87487 87666 65 - . . scaffold1475 WUBlastX LINE_RTE-X 91640 92119 57 - . . scaffold1475 WUBlastX LINE_RTE-X 91739 92239 64 - . . scaffold1475 WUBlastX LINE_RTE-X 91787 92119 65 - . . scaffold1475 TRF Tandem_Repeat 103208 103243 63 + . . scaffold1475 GLEAN mRNA 105013 111468 0.650413 - . ID=CGI_10005953; scaffold1475 WUBlastX LINE_L1-Tx1 109002 109889 72 - . . scaffold1475 GLEAN promoter 111469 112468 0.650413 - . ID=CGI_10005953; scaffold1475 TRF Tandem_Repeat 115439 115479 55 + . . scaffold1475 GLEAN mRNA 134909 140895 0.551268 - . ID=CGI_10005954; scaffold1475 TRF Tandem_Repeat 136341 136397 107 + . . scaffold1475 TRF Tandem_Repeat 137228 137278 50 + . . scaffold1475 GLEAN promoter 140896 141806 0.551268 - . ID=CGI_10005954; scaffold1475 TRF Tandem_Repeat 141375 141483 155 + . . scaffold1475 TRF Tandem_Repeat 141376 141489 183 + . . scaffold1476 WUBlastX DNA_TcMar-Pogo 1771 2283 154 - . . scaffold1476 WUBlastX DNA_TcMar-Pogo 1903 2274 181 - . . scaffold1476 WUBlastX DNA_TcMar-Pogo 2274 2537 171 - . . scaffold1476 WUBlastX DNA_TcMar-Tigge 2307 2579 75 - . . scaffold1476 WUBlastX DNA_TcMar-Tigge 2574 2663 27 - . . scaffold1476 WUBlastX DNA_TcMar-Pogo 2616 2735 37 - . . scaffold1476 WUBlastX LINE_RTE-X 4989 5108 51 - . . scaffold1476 WUBlastX LINE_RTE-X 5117 5278 21 - . . scaffold1476 GLEAN mRNA 9732 11517 0.999954 - . ID=CGI_10009817; scaffold1476 GLEAN promoter 11518 12517 0.999954 - . ID=CGI_10009817; scaffold1476 TRF Tandem_Repeat 14812 14853 84 + . . scaffold1476 TRF Tandem_Repeat 25664 25707 63 + . . scaffold1476 WUBlastX LTR_Gypsy 27487 28287 127 - . . scaffold1476 WUBlastX LTR_Gypsy 27700 28140 234 - . . scaffold1476 WUBlastX LTR_Gypsy 27715 28281 148 - . . scaffold1476 WUBlastX LTR_Gypsy-Cigr 28081 28707 104 - . . scaffold1476 WUBlastX LTR_Gypsy 28456 28971 96 - . . scaffold1476 WUBlastX LTR_Gypsy 28938 29804 193 - . . scaffold1476 WUBlastX LTR_Gypsy 29292 29912 30 - . . scaffold1476 TRF Tandem_Repeat 32002 32071 133 + . . scaffold1476 TRF Tandem_Repeat 35794 35855 81 + . . scaffold1476 TRF Tandem_Repeat 37622 38706 1381 + . . scaffold1476 GLEAN mRNA 83635 86003 0.739608 - . ID=CGI_10009818; scaffold1476 GLEAN promoter 85685 86684 0.9999 + . ID=CGI_10009819; scaffold1476 GLEAN promoter 86004 87003 0.739608 - . ID=CGI_10009818; scaffold1476 GLEAN mRNA 86685 89746 0.9999 + . ID=CGI_10009819; scaffold1476 GLEAN mRNA 95810 97770 1 - . ID=CGI_10009820; scaffold1476 GLEAN promoter 97771 98770 1 - . ID=CGI_10009820; scaffold1476 GLEAN promoter 98392 99391 0.812087 + . ID=CGI_10009821; scaffold1476 GLEAN mRNA 99392 102588 0.812087 + . ID=CGI_10009821; scaffold1476 TRF Tandem_Repeat 103686 103720 70 + . . scaffold1476 WUBlastX LINE_R2-Hero 107752 108360 270 - . . scaffold1476 WUBlastX LINE_R2-Hero 108347 108412 23 - . . scaffold1476 TRF Tandem_Repeat 112923 112963 82 + . . scaffold1476 TRF Tandem_Repeat 115805 116117 339 + . . scaffold1476 GLEAN mRNA 119267 120409 0.999675 - . ID=CGI_10009822; scaffold1476 GLEAN promoter 120410 121409 0.999675 - . ID=CGI_10009822; scaffold1476 GLEAN promoter 121884 122883 0.933086 + . ID=CGI_10009823; scaffold1476 GLEAN mRNA 122884 130360 0.933086 + . ID=CGI_10009823; scaffold1476 TRF Tandem_Repeat 132689 132733 90 + . . scaffold1476 GLEAN mRNA 134197 137165 1 - . ID=CGI_10009824; scaffold1476 GLEAN promoter 137166 138165 1 - . ID=CGI_10009824; scaffold1476 GLEAN mRNA 146882 168555 0.993885 - . ID=CGI_10009825; scaffold1476 TRF Tandem_Repeat 150606 151001 516 + . . scaffold1476 TRF Tandem_Repeat 158393 158427 61 + . . scaffold1476 TRF Tandem_Repeat 160384 160753 490 + . . scaffold1476 TRF Tandem_Repeat 160815 160931 234 + . . scaffold1476 TRF Tandem_Repeat 160913 161234 278 + . . scaffold1476 GLEAN promoter 168556 169555 0.993885 - . ID=CGI_10009825; scaffold1476 GLEAN promoter 168615 169614 0.862141 + . ID=CGI_10009826; scaffold1476 GLEAN mRNA 169615 179488 0.862141 + . ID=CGI_10009826; scaffold1476 WUBlastX LINE_CR1-L2 170899 171075 20 + . . scaffold1476 WUBlastX LINE_L2 170987 171127 44 + . . scaffold1476 WUBlastX LINE_CR1 171063 171215 63 + . . scaffold1476 WUBlastX LINE_CR1-L2 171114 171506 108 + . . scaffold1476 WUBlastX LINE_CR1-L2 171503 171628 62 + . . scaffold1476 WUBlastX LINE_L2 171850 171954 32 + . . scaffold1476 WUBlastX LINE_CR1-L2 172389 172553 21 + . . scaffold1476 WUBlastX LINE_RTE-X 172510 172632 29 - . . scaffold1476 WUBlastX LINE_RTE-X 172540 172662 73 - . . scaffold1476 WUBlastX LINE_RTE-X 172540 173721 54 - . . scaffold1476 WUBlastX LINE_RTE-X 173026 173754 157 - . . scaffold1476 WUBlastX LINE_RTE-X 173715 174107 111 - . . scaffold1476 WUBlastX LINE_Jockey 173940 174137 73 - . . scaffold1476 WUBlastX LINE_RTE-X 175116 175187 23 - . . scaffold1476 TRF Tandem_Repeat 175811 176630 833 + . . scaffold1476 TRF Tandem_Repeat 183981 184018 76 + . . scaffold1476 TRF Tandem_Repeat 196697 196758 124 + . . scaffold1476 GLEAN promoter 213172 214171 0.888104 + . ID=CGI_10009827; scaffold1476 GLEAN mRNA 214172 229952 0.888104 + . ID=CGI_10009827; scaffold1476 TRF Tandem_Repeat 228985 229025 55 + . . scaffold1476 GLEAN mRNA 235027 243223 0.993945 - . ID=CGI_10009828; scaffold1476 TRF Tandem_Repeat 240305 240404 191 + . . scaffold1476 TRF Tandem_Repeat 240736 240776 82 + . . scaffold1476 GLEAN promoter 243224 243662 0.993945 - . ID=CGI_10009828; scaffold1477 GLEAN promoter 2362 3361 1 + . ID=CGI_10002963; scaffold1477 GLEAN mRNA 3362 6152 1 + . ID=CGI_10002963; scaffold1477 GLEAN promoter 20774 21773 1 + . ID=CGI_10002964; scaffold1477 GLEAN mRNA 21774 26567 1 + . ID=CGI_10002964; scaffold1477 TRF Tandem_Repeat 27952 28006 65 + . . scaffold1477 GLEAN mRNA 29427 34412 0.999995 - . ID=CGI_10002965; scaffold1477 GLEAN promoter 34413 35412 0.999995 - . ID=CGI_10002965; scaffold1477 TRF Tandem_Repeat 35563 35596 68 + . . scaffold1477 TRF Tandem_Repeat 35980 36029 75 + . . scaffold1477 WUBlastX DNA_IS4EU 36787 36969 91 + . . scaffold1477 WUBlastX DNA_IS4EU 36975 37286 238 + . . scaffold1477 WUBlastX DNA_Kolobok-IS4 37321 37365 23 + . . scaffold1477 TRF Tandem_Repeat 37538 37572 52 + . . scaffold1477 WUBlastX DNA_IS4EU 39831 40241 178 - . . scaffold1477 WUBlastX DNA_IS4EU 40244 40540 45 - . . scaffold1477 WUBlastX DNA_IS4EU 40253 40492 109 - . . scaffold1477 WUBlastX DNA_IS4EU 40929 41069 22 - . . scaffold1477 TRF Tandem_Repeat 52337 52409 58 + . . scaffold1477 TRF Tandem_Repeat 52349 52409 50 + . . scaffold1477 GLEAN promoter 59236 60235 0.777637 + . ID=CGI_10002966; scaffold1477 GLEAN mRNA 60236 60586 0.777637 + . ID=CGI_10002966; scaffold1478 GLEAN promoter 1 129 0.841413 + . ID=CGI_10000895; scaffold1478 GLEAN mRNA 130 11329 0.841413 + . ID=CGI_10000895; scaffold1479 WUBlastX LTR_Gypsy 2608 4209 104 + . . scaffold1479 WUBlastX LTR_Gypsy 3361 4308 114 + . . scaffold1479 WUBlastX LTR_Gypsy 4140 4916 237 + . . scaffold1479 WUBlastX LTR_Gypsy 4910 5629 777 + . . scaffold1479 WUBlastX LTR_Gypsy 5605 7704 1934 + . . scaffold1479 WUBlastX LTR_Gypsy 7657 7779 26 + . . scaffold148 GLEAN promoter 5630 6629 0.999676 + . ID=CGI_10008516; scaffold148 GLEAN mRNA 6630 8858 0.999676 + . ID=CGI_10008516; scaffold148 TRF Tandem_Repeat 12959 12990 64 + . . scaffold148 TRF Tandem_Repeat 16295 16336 50 + . . scaffold148 WUBlastX LTR_Gypsy 18482 18805 191 + . . scaffold148 WUBlastX LTR_Gypsy-Cigr 18557 18817 197 + . . scaffold148 TRF Tandem_Repeat 22229 22767 757 + . . scaffold148 TRF Tandem_Repeat 22627 22716 68 + . . scaffold148 TRF Tandem_Repeat 31142 31169 56 + . . scaffold148 WUBlastX LINE_CR1-L2 32986 34284 825 - . . scaffold148 WUBlastX LINE_Jockey 33889 34398 139 - . . scaffold148 WUBlastX DNA_Harbinger 38309 38947 144 - . . scaffold148 WUBlastX DNA_Harbinger 38390 38827 216 - . . scaffold148 WUBlastX DNA_Harbinger 38784 39179 118 - . . scaffold148 WUBlastX DNA_Harbinger 38877 39338 26 - . . scaffold148 WUBlastX LINE_L2 41121 41516 38 + . . scaffold148 WUBlastX LINE_L2 41196 41531 40 + . . scaffold148 WUBlastX LINE_CR1-L2 41241 41516 42 + . . scaffold148 WUBlastX LINE_L2 41554 41643 20 + . . scaffold148 TRF Tandem_Repeat 51239 51516 251 + . . scaffold148 TRF Tandem_Repeat 51239 51520 219 + . . scaffold148 TRF Tandem_Repeat 51265 51468 232 + . . scaffold148 WUBlastX DNA_TcMar-Fot1 71234 71923 186 + . . scaffold148 WUBlastX DNA_TcMar-Tigge 71687 71989 42 + . . scaffold148 WUBlastX DNA_TcMar-Fot1 71994 72233 146 + . . scaffold148 WUBlastX DNA_TcMar-Fot1 72027 72308 140 + . . scaffold148 GLEAN promoter 73062 74061 0.481188 + . ID=CGI_10008517; scaffold148 GLEAN mRNA 74062 74508 0.481188 + . ID=CGI_10008517; scaffold148 WUBlastX DNA_Harbinger 75950 76078 21 + . . scaffold148 WUBlastX DNA_Harbinger 75971 76078 24 + . . scaffold148 WUBlastX DNA_Harbinger 76388 76525 45 + . . scaffold148 WUBlastX DNA_Harbinger 76497 76580 45 + . . scaffold148 TRF Tandem_Repeat 77230 77273 88 + . . scaffold148 TRF Tandem_Repeat 79007 81447 3423 + . . scaffold148 TRF Tandem_Repeat 86479 87611 1631 + . . scaffold148 TRF Tandem_Repeat 87642 87697 94 + . . scaffold148 TRF Tandem_Repeat 88797 88845 91 + . . scaffold148 TRF Tandem_Repeat 99002 99050 98 + . . scaffold148 TRF Tandem_Repeat 99127 99174 96 + . . scaffold148 WUBlastX LTR_Gypsy 99300 99545 56 + . . scaffold148 WUBlastX LTR_Gypsy 99965 100039 28 + . . scaffold148 WUBlastX LTR_Gypsy 100235 100552 45 + . . scaffold148 WUBlastX LTR_Gypsy 100286 100492 102 + . . scaffold148 WUBlastX LTR_Gypsy-Cigr 100295 100549 99 + . . scaffold148 GLEAN promoter 100381 101380 0.754508 + . ID=CGI_10008518; scaffold148 TRF Tandem_Repeat 101045 101109 130 + . . scaffold148 GLEAN mRNA 101381 106706 0.754508 + . ID=CGI_10008518; scaffold148 TRF Tandem_Repeat 131378 131440 119 + . . scaffold148 GLEAN promoter 147864 148863 0.435131 + . ID=CGI_10008519; scaffold148 GLEAN mRNA 148864 156626 0.435131 + . ID=CGI_10008519; scaffold148 GLEAN promoter 157264 158263 0.999996 + . ID=CGI_10008520; scaffold148 GLEAN mRNA 158264 163539 0.999996 + . ID=CGI_10008520; scaffold148 GLEAN mRNA 165881 170257 0.999375 - . ID=CGI_10008521; scaffold148 TRF Tandem_Repeat 166882 166931 100 + . . scaffold148 TRF Tandem_Repeat 166961 167007 94 + . . scaffold148 GLEAN promoter 169448 170447 0.544852 + . ID=CGI_10008522; scaffold148 GLEAN promoter 170258 171257 0.999375 - . ID=CGI_10008521; scaffold148 GLEAN mRNA 170448 185202 0.544852 + . ID=CGI_10008522; scaffold148 TRF Tandem_Repeat 177351 177487 199 + . . scaffold148 TRF Tandem_Repeat 185506 185553 96 + . . scaffold148 GLEAN mRNA 193720 197398 1 - . ID=CGI_10008523; scaffold148 GLEAN promoter 197399 198398 1 - . ID=CGI_10008523; scaffold148 GLEAN promoter 208482 209481 1 + . ID=CGI_10008524; scaffold148 GLEAN mRNA 209482 210676 1 + . ID=CGI_10008524; scaffold1480 TRF Tandem_Repeat 3474 3567 98 + . . scaffold1480 TRF Tandem_Repeat 3797 3956 142 + . . scaffold1480 TRF Tandem_Repeat 4033 4124 96 + . . scaffold1480 TRF Tandem_Repeat 4221 4287 127 + . . scaffold1480 WUBlastX LINE_RTE-X 4337 4966 349 + . . scaffold1480 WUBlastX LINE_RTE-X 4962 6428 701 + . . scaffold1480 TRF Tandem_Repeat 36332 36359 56 + . . scaffold1480 WUBlastX DNA_PiggyBac 36711 37067 105 - . . scaffold1480 WUBlastX DNA_PiggyBac 37066 37302 76 - . . scaffold1480 WUBlastX DNA_PiggyBac 37096 37284 90 - . . scaffold1480 TRF Tandem_Repeat 37351 37401 50 + . . scaffold1480 TRF Tandem_Repeat 37351 37401 77 + . . scaffold1480 WUBlastX DNA_PiggyBac 38412 38717 160 - . . scaffold1480 TRF Tandem_Repeat 42473 42564 184 + . . scaffold1480 TRF Tandem_Repeat 49057 49194 150 + . . scaffold1480 TRF Tandem_Repeat 49740 49797 98 + . . scaffold1480 TRF Tandem_Repeat 52421 52454 68 + . . scaffold1480 TRF Tandem_Repeat 53728 53763 72 + . . scaffold1480 TRF Tandem_Repeat 57890 57930 57 + . . scaffold1480 TRF Tandem_Repeat 60889 60941 106 + . . scaffold1480 GLEAN promoter 62537 63536 0.919725 + . ID=CGI_10008634; scaffold1480 GLEAN mRNA 63537 65305 0.919725 + . ID=CGI_10008634; scaffold1480 WUBlastX LINE_R2 68711 68860 52 - . . scaffold1480 WUBlastX LINE_R2 68869 69060 60 - . . scaffold1480 WUBlastX LINE_Dong-R4 69104 69325 27 - . . scaffold1480 WUBlastX LINE_R2 69173 69325 38 - . . scaffold1480 WUBlastX LINE_R2 69327 69497 108 - . . scaffold1480 WUBlastX LINE_R2 69502 69804 179 - . . scaffold1480 WUBlastX LINE_R2 69801 70124 47 - . . scaffold1480 WUBlastX DNA_Harbinger 73057 73425 121 + . . scaffold1480 WUBlastX DNA_Harbinger 73783 73971 72 + . . scaffold1480 WUBlastX DNA_Harbinger 73822 74010 92 + . . scaffold1480 WUBlastX DNA_Harbinger 73822 73971 100 + . . scaffold1480 WUBlastX DNA_Harbinger 73852 73971 133 + . . scaffold1480 WUBlastX DNA_Harbinger 74145 74207 32 + . . scaffold1480 TRF Tandem_Repeat 74897 74942 74 + . . scaffold1480 WUBlastX LINE_R2 77157 77285 91 - . . scaffold1480 GLEAN mRNA 77249 77533 0.999102 - . ID=CGI_10008636; scaffold1480 WUBlastX LINE_R2 77303 77470 27 - . . scaffold1480 WUBlastX LINE_R2 77348 77470 29 - . . scaffold1480 GLEAN promoter 77534 78533 0.999102 - . ID=CGI_10008636; scaffold1480 WUBlastX LINE_R2 78977 79453 134 - . . scaffold1480 WUBlastX LINE_R2 79049 79435 215 - . . scaffold1480 WUBlastX LINE_R2 79413 80465 313 - . . scaffold1480 WUBlastX LINE_R2 79767 80600 186 - . . scaffold1480 WUBlastX LINE_Jockey 81231 81644 68 - . . scaffold1480 WUBlastX LINE_L1-Tx1 81363 81644 87 - . . scaffold1480 WUBlastX LINE_R2 81408 81644 183 - . . scaffold1480 WUBlastX LINE_R2 81426 81809 92 - . . scaffold1480 WUBlastX LINE_R2 81800 82435 335 - . . scaffold1480 WUBlastX LINE_I 81932 82660 82 - . . scaffold1480 WUBlastX LINE_R2 82669 82896 62 - . . scaffold1480 WUBlastX LINE_R2 82744 83013 32 - . . scaffold1480 WUBlastX DNA_Harbinger 83321 83485 22 + . . scaffold1480 WUBlastX DNA_Harbinger 83484 83723 100 + . . scaffold1480 WUBlastX DNA_Harbinger 83931 84047 112 + . . scaffold1480 WUBlastX DNA_Harbinger 84222 84344 51 + . . scaffold1480 WUBlastX DNA_Harbinger 84222 84398 36 + . . scaffold1480 WUBlastX DNA_Harbinger 114460 114852 104 + . . scaffold1480 WUBlastX DNA_Harbinger 115456 115506 39 + . . scaffold1480 TRF Tandem_Repeat 116993 117153 63 + . . scaffold1480 TRF Tandem_Repeat 119282 119322 57 + . . scaffold1480 WUBlastX LINE_CR1 121010 121114 24 - . . scaffold1480 WUBlastX LINE_L2 121031 121129 31 - . . scaffold1480 WUBlastX LINE_L2 121275 121793 161 - . . scaffold1480 WUBlastX LINE_CR1-L2 121789 122133 83 - . . scaffold1480 WUBlastX LINE_L2 121819 122202 70 - . . scaffold1480 WUBlastX LINE_CR1-L2 121846 122133 116 - . . scaffold1480 TRF Tandem_Repeat 125521 125607 70 + . . scaffold1480 TRF Tandem_Repeat 130160 130203 61 + . . scaffold1480 TRF Tandem_Repeat 130161 130210 55 + . . scaffold1480 TRF Tandem_Repeat 130234 131357 1603 + . . scaffold1480 GLEAN mRNA 131830 138953 0.535981 - . ID=CGI_10008637; scaffold1480 TRF Tandem_Repeat 134233 134280 60 + . . scaffold1480 TRF Tandem_Repeat 134311 136268 3020 + . . scaffold1480 WUBlastX LINE_R2 137670 138191 271 - . . scaffold1480 WUBlastX LINE_R2 137670 138692 160 - . . scaffold1480 WUBlastX LINE_R2 137673 139004 108 - . . scaffold1480 WUBlastX LINE_R2 137673 138350 203 - . . scaffold1480 GLEAN promoter 138954 139953 0.535981 - . ID=CGI_10008637; scaffold1480 TRF Tandem_Repeat 143950 143995 92 + . . scaffold1480 GLEAN mRNA 145751 160551 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_R2 156975 157637 95 - . . scaffold1480 WUBlastX LINE_R2 157083 157646 288 - . . scaffold1480 WUBlastX LINE_R2 157646 159403 898 - . . scaffold1480 WUBlastX LINE_L1 157844 159706 244 - . . scaffold1480 WUBlastX LINE_R2 159699 160028 144 - . . scaffold1480 WUBlastX LINE_R1 160162 160215 20 - . . scaffold1480 WUBlastX LINE_R2 160240 160434 27 - . . scaffold1480 GLEAN promoter 160552 161551 0.693127 - . ID=CGI_10008638; scaffold1480 WUBlastX LINE_L1-Tx1 162418 163050 118 - . . scaffold1480 WUBlastX LINE_L1 162667 163122 37 - . . scaffold1480 TRF Tandem_Repeat 164276 164303 56 + . . scaffold1480 WUBlastX LINE_RTE-X 166612 167214 66 + . . scaffold1480 WUBlastX LINE_RTE-X 166612 166944 132 + . . scaffold1480 WUBlastX LINE_Jockey 167427 167888 39 + . . scaffold1480 WUBlastX LINE_R1 167565 167867 51 + . . scaffold1480 WUBlastX LINE_RTE-X 167637 168086 226 + . . scaffold1480 WUBlastX LINE_RTE-X 167637 168707 188 + . . scaffold1480 WUBlastX LINE_Rex-Babar 169029 169085 23 + . . scaffold1480 WUBlastX LINE_L2 169035 169112 20 + . . scaffold1480 WUBlastX LINE_L2 169334 169771 114 + . . scaffold1480 WUBlastX LINE_L2 169400 169756 182 + . . scaffold1480 WUBlastX LINE_L2 169460 169771 184 + . . scaffold1480 WUBlastX LINE_L2 169771 170334 325 + . . scaffold1480 WUBlastX LINE_L2 170322 170957 198 + . . scaffold1480 GLEAN promoter 171502 172501 0.618235 + . ID=CGI_10008639; scaffold1480 GLEAN promoter 172065 173064 0.694463 + . ID=CGI_10008640; scaffold1480 GLEAN mRNA 172502 172666 0.618235 + . ID=CGI_10008639; scaffold1480 GLEAN mRNA 173065 173274 0.694463 + . ID=CGI_10008640; scaffold1480 WUBlastX DNA_Kolobok 174656 174802 93 - . . scaffold1480 WUBlastX DNA_Kolobok 174913 175074 65 - . . scaffold1480 WUBlastX DNA_Kolobok 175188 175517 69 - . . scaffold1480 WUBlastX DNA_TcMar-Tc1 185850 186641 377 + . . scaffold1480 GLEAN promoter 186499 187498 0.719191 + . ID=CGI_10008641; scaffold1480 GLEAN mRNA 187499 190306 0.719191 + . ID=CGI_10008641; scaffold1480 TRF Tandem_Repeat 187795 188206 397 + . . scaffold1480 GLEAN promoter 197840 198839 0.748853 + . ID=CGI_10008642; scaffold1480 GLEAN mRNA 198840 211895 0.748853 + . ID=CGI_10008642; scaffold1480 TRF Tandem_Repeat 199341 199468 96 + . . scaffold1480 TRF Tandem_Repeat 201728 201766 78 + . . scaffold1480 TRF Tandem_Repeat 204514 204541 56 + . . scaffold1480 TRF Tandem_Repeat 211427 211499 67 + . . scaffold1481 GLEAN mRNA 2380 5442 0.648545 - . ID=CGI_10003891; scaffold1481 GLEAN promoter 5443 6442 0.648545 - . ID=CGI_10003891; scaffold1481 WUBlastX LINE_L1-Tx1 9146 9436 50 + . . scaffold1481 WUBlastX LINE_RTE-X 9379 9639 60 + . . scaffold1481 WUBlastX LINE_RTE-X 9826 9954 24 + . . scaffold1481 WUBlastX LINE_RTE-X 9832 9921 33 + . . scaffold1481 TRF Tandem_Repeat 11115 11172 109 + . . scaffold1481 TRF Tandem_Repeat 12273 12323 93 + . . scaffold1481 GLEAN mRNA 18084 39742 0.999949 - . ID=CGI_10003892; scaffold1481 TRF Tandem_Repeat 19272 19336 68 + . . scaffold1481 TRF Tandem_Repeat 19272 19345 52 + . . scaffold1481 TRF Tandem_Repeat 19276 19338 69 + . . scaffold1481 WUBlastX LINE_L1-Tx1 28284 28559 73 + . . scaffold1481 WUBlastX LINE_L1-Tx1 28368 28616 27 + . . scaffold1481 TRF Tandem_Repeat 35836 35867 64 + . . scaffold1481 GLEAN promoter 39743 40742 0.999949 - . ID=CGI_10003892; scaffold1481 TRF Tandem_Repeat 40931 40985 101 + . . scaffold1481 TRF Tandem_Repeat 43602 43645 88 + . . scaffold1481 TRF Tandem_Repeat 45822 45848 54 + . . scaffold1481 TRF Tandem_Repeat 49078 49131 99 + . . scaffold1481 TRF Tandem_Repeat 50585 50612 56 + . . scaffold1481 TRF Tandem_Repeat 50991 51040 75 + . . scaffold1481 WUBlastX LINE_L2 55345 56358 34 - . . scaffold1481 WUBlastX RC_Helitron 55519 59364 2340 - . . scaffold1481 WUBlastX RC_Helitron 59367 62156 1323 - . . scaffold1481 WUBlastX DNA_Helitron 60777 62843 240 - . . scaffold1481 TRF Tandem_Repeat 74211 74248 76 + . . scaffold1481 TRF Tandem_Repeat 75489 75541 106 + . . scaffold1481 TRF Tandem_Repeat 78630 78934 387 + . . scaffold1483 GLEAN promoter 1 27 0.999375 + . ID=CGI_10000602; scaffold1483 GLEAN mRNA 28 375 0.999375 + . ID=CGI_10000602; scaffold1484 GLEAN mRNA 4722 5720 0.733284 - . ID=CGI_10013251; scaffold1484 GLEAN promoter 5721 6720 0.733284 - . ID=CGI_10013251; scaffold1484 GLEAN mRNA 12744 24434 0.992151 - . ID=CGI_10013252; scaffold1484 GLEAN promoter 24435 25434 0.992151 - . ID=CGI_10013252; scaffold1484 TRF Tandem_Repeat 26904 26945 84 + . . scaffold1484 GLEAN mRNA 27940 39363 0.893015 - . ID=CGI_10013253; scaffold1484 TRF Tandem_Repeat 30021 30150 84 + . . scaffold1484 TRF Tandem_Repeat 30070 30242 64 + . . scaffold1484 TRF Tandem_Repeat 31192 31243 104 + . . scaffold1484 GLEAN promoter 39364 40363 0.893015 - . ID=CGI_10013253; scaffold1484 TRF Tandem_Repeat 39696 39720 50 + . . scaffold1484 TRF Tandem_Repeat 40353 40404 95 + . . scaffold1484 TRF Tandem_Repeat 41402 41440 78 + . . scaffold1484 GLEAN promoter 42916 43915 0.998274 + . ID=CGI_10013254; scaffold1484 TRF Tandem_Repeat 43635 43678 88 + . . scaffold1484 GLEAN mRNA 43916 53652 0.998274 + . ID=CGI_10013254; scaffold1484 GLEAN mRNA 54332 65017 0.626178 - . ID=CGI_10013255; scaffold1484 GLEAN promoter 63515 64514 0.593095 + . ID=CGI_10013256; scaffold1484 GLEAN mRNA 64515 75845 0.593095 + . ID=CGI_10013256; scaffold1484 GLEAN promoter 65018 66017 0.626178 - . ID=CGI_10013255; scaffold1484 TRF Tandem_Repeat 69688 69738 102 + . . scaffold1484 GLEAN mRNA 70806 71398 0.999855 - . ID=CGI_10013257; scaffold1484 GLEAN promoter 71399 72398 0.999855 - . ID=CGI_10013257; scaffold1484 GLEAN mRNA 80386 85720 0.726027 - . ID=CGI_10013258; scaffold1484 GLEAN promoter 85721 86720 0.726027 - . ID=CGI_10013258; scaffold1484 GLEAN promoter 91407 92406 0.996819 + . ID=CGI_10013259; scaffold1484 GLEAN mRNA 92407 94067 0.996819 + . ID=CGI_10013259; scaffold1484 WUBlastX DNA_Harbinger 99846 100181 109 + . . scaffold1484 WUBlastX DNA_Harbinger 99876 100151 157 + . . scaffold1484 WUBlastX DNA_Harbinger 101067 101393 121 - . . scaffold1484 WUBlastX DNA_Harbinger 101193 101393 149 - . . scaffold1484 WUBlastX DNA_Harbinger 101401 101574 142 - . . scaffold1484 WUBlastX DNA_Harbinger 101407 101640 114 - . . scaffold1484 WUBlastX DNA_Harbinger 102192 102791 76 - . . scaffold1484 WUBlastX DNA_Harbinger 102372 102797 249 - . . scaffold1484 GLEAN mRNA 103851 118273 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 106684 107058 161 - . . scaffold1484 WUBlastX LTR_DIRS 106762 107124 29 - . . scaffold1484 WUBlastX LTR_Ngaro 107779 108111 140 - . . scaffold1484 WUBlastX LTR_Ngaro 108110 108457 202 - . . scaffold1484 WUBlastX LTR_Ngaro 108110 108886 119 - . . scaffold1484 WUBlastX LTR_Ngaro 108450 108716 170 - . . scaffold1484 WUBlastX LTR_Ngaro 108710 108934 53 - . . scaffold1484 TRF Tandem_Repeat 109307 109398 71 + . . scaffold1484 TRF Tandem_Repeat 112094 112228 89 + . . scaffold1484 GLEAN promoter 118274 119273 0.818682 - . ID=CGI_10013260; scaffold1484 WUBlastX LTR_Ngaro 120999 121652 194 - . . scaffold1484 WUBlastX LTR_Ngaro 121631 122413 526 - . . scaffold1484 WUBlastX LTR_Ngaro 122401 122556 29 - . . scaffold1484 TRF Tandem_Repeat 122834 122922 59 + . . scaffold1484 TRF Tandem_Repeat 139116 139149 50 + . . scaffold1484 TRF Tandem_Repeat 139296 139329 50 + . . scaffold1484 WUBlastX LTR_Pao 141029 141133 51 - . . scaffold1484 WUBlastX LTR_Pao 141225 142409 1123 - . . scaffold1484 WUBlastX LTR_Pao 145544 147238 310 - . . scaffold1484 TRF Tandem_Repeat 153028 153085 82 + . . scaffold1484 TRF Tandem_Repeat 153040 153085 74 + . . scaffold1484 GLEAN mRNA 163846 170056 0.924924 - . ID=CGI_10013261; scaffold1484 GLEAN promoter 170057 171056 0.924924 - . ID=CGI_10013261; scaffold1484 GLEAN promoter 178260 179259 0.987285 + . ID=CGI_10013262; scaffold1484 GLEAN mRNA 179260 209329 0.987285 + . ID=CGI_10013262; scaffold1484 TRF Tandem_Repeat 179562 179623 99 + . . scaffold1484 TRF Tandem_Repeat 180379 180485 133 + . . scaffold1484 TRF Tandem_Repeat 183302 183434 180 + . . scaffold1484 TRF Tandem_Repeat 185079 185762 794 + . . scaffold1484 TRF Tandem_Repeat 185929 185982 58 + . . scaffold1484 TRF Tandem_Repeat 189732 189846 196 + . . scaffold1484 TRF Tandem_Repeat 202758 202805 52 + . . scaffold1484 TRF Tandem_Repeat 202974 204138 1480 + . . scaffold1484 TRF Tandem_Repeat 208691 208821 208 + . . scaffold1484 WUBlastX LINE_L1-Tx1 217139 218122 117 - . . scaffold1484 WUBlastX LINE_L1-Tx1 219114 219581 61 - . . scaffold1484 WUBlastX LINE_L1-Tx1 219216 219581 194 - . . scaffold1484 WUBlastX LINE_L1 219255 219680 45 - . . scaffold1484 WUBlastX LINE_L1 220338 220517 20 - . . scaffold1484 WUBlastX LINE_L1 220398 220517 26 - . . scaffold1484 GLEAN promoter 236791 237790 0.836238 + . ID=CGI_10013263; scaffold1484 GLEAN mRNA 237791 240839 0.836238 + . ID=CGI_10013263; scaffold1484 GLEAN promoter 246398 247397 0.964846 + . ID=CGI_10013264; scaffold1484 GLEAN mRNA 247398 248894 0.964846 + . ID=CGI_10013264; scaffold1484 WUBlastX LINE_RTE-X 250939 251442 36 + . . scaffold1484 WUBlastX LINE_RTE-X 251146 251442 114 + . . scaffold1484 WUBlastX LINE_RTE-X 251245 251469 119 + . . scaffold1484 WUBlastX LINE_RTE-X 251466 251738 145 + . . scaffold1484 WUBlastX LINE_RTE-X 251771 252346 86 + . . scaffold1484 WUBlastX LINE_RTE-X 252432 252938 54 + . . scaffold1484 WUBlastX LINE_RTE-X 252456 252842 66 + . . scaffold1484 GLEAN promoter 256797 257796 0.412714 + . ID=CGI_10013265; scaffold1484 GLEAN mRNA 257797 259068 0.412714 + . ID=CGI_10013265; scaffold1484 TRF Tandem_Repeat 263888 263936 80 + . . scaffold1484 WUBlastX LINE_L2 267415 267597 72 - . . scaffold1484 WUBlastX LINE_L2 267415 267555 96 - . . scaffold1484 WUBlastX LINE_L2 267465 267797 48 - . . scaffold1484 TRF Tandem_Repeat 268889 268979 112 + . . scaffold1484 GLEAN promoter 273949 274948 0.9999 + . ID=CGI_10013267; scaffold1484 GLEAN mRNA 274949 275662 0.9999 + . ID=CGI_10013267; scaffold1484 TRF Tandem_Repeat 281009 281043 52 + . . scaffold1484 TRF Tandem_Repeat 281041 281095 110 + . . scaffold1484 WUBlastX LINE_CR1 287371 287811 38 + . . scaffold1484 WUBlastX LINE_CR1 287509 287772 43 + . . scaffold1484 WUBlastX LINE_CR1-L2 287551 287811 110 + . . scaffold1484 WUBlastX LINE_CR1 287608 287880 54 + . . scaffold1484 WUBlastX LINE_L2 287829 288089 38 + . . scaffold1484 WUBlastX LINE_CR1-L2 288197 288271 27 + . . scaffold1484 WUBlastX LINE_CR1-L2 288264 288728 57 + . . scaffold1484 WUBlastX LINE_L2 288351 288716 145 + . . scaffold1484 WUBlastX LINE_CR1-L2 288745 288948 137 + . . scaffold1484 WUBlastX LINE_CR1-L2 288745 289158 114 + . . scaffold1484 WUBlastX LINE_CR1 288748 289380 62 + . . scaffold1484 WUBlastX LINE_L2 289955 290326 40 + . . scaffold1484 WUBlastX LINE_L2 290093 290329 90 + . . scaffold1484 WUBlastX LINE_CR1-L2 290144 290383 94 + . . scaffold1484 WUBlastX LINE_CR1-L2 290403 290732 82 + . . scaffold1484 WUBlastX LINE_CR1-L2 290714 290962 38 + . . scaffold1484 GLEAN promoter 299124 300123 0.771927 + . ID=CGI_10013269; scaffold1484 GLEAN mRNA 300124 301782 0.771927 + . ID=CGI_10013269; scaffold1484 TRF Tandem_Repeat 303354 303393 80 + . . scaffold1484 WUBlastX DNA_TcMar-Marin 306060 306275 72 - . . scaffold1484 TRF Tandem_Repeat 312238 312359 67 + . . scaffold1484 TRF Tandem_Repeat 312378 312622 109 + . . scaffold1484 GLEAN mRNA 315082 322454 1 - . ID=CGI_10013270; scaffold1484 TRF Tandem_Repeat 319441 319507 125 + . . scaffold1484 GLEAN promoter 321917 322916 0.831954 + . ID=CGI_10013271; scaffold1484 GLEAN promoter 322455 323454 1 - . ID=CGI_10013270; scaffold1484 GLEAN mRNA 322917 329117 0.831954 + . ID=CGI_10013271; scaffold1484 TRF Tandem_Repeat 324086 324122 74 + . . scaffold1484 TRF Tandem_Repeat 332364 332391 56 + . . scaffold1484 WUBlastX DNA_Merlin 336325 336726 33 + . . scaffold1484 WUBlastX DNA_Merlin 336481 336738 38 + . . scaffold1484 WUBlastX DNA_Merlin 336716 336934 57 + . . scaffold1484 WUBlastX DNA_Merlin 336878 336955 32 + . . scaffold1484 WUBlastX DNA_Merlin 336890 336967 28 + . . scaffold1484 WUBlastX DNA_Merlin 337152 337529 187 + . . scaffold1484 GLEAN mRNA 342488 349065 0.84036 - . ID=CGI_10013272; scaffold1484 TRF Tandem_Repeat 347124 347161 76 + . . scaffold1484 GLEAN promoter 349066 350065 0.84036 - . ID=CGI_10013272; scaffold1485 GLEAN promoter 464 1463 0.98054 + . ID=CGI_10003288; scaffold1485 GLEAN mRNA 1464 19602 0.98054 + . ID=CGI_10003288; scaffold1485 TRF Tandem_Repeat 6525 6572 96 + . . scaffold1485 TRF Tandem_Repeat 6572 6609 76 + . . scaffold1485 TRF Tandem_Repeat 21174 21214 82 + . . scaffold1485 GLEAN mRNA 23079 29075 1 - . ID=CGI_10003289; scaffold1485 GLEAN promoter 28632 29631 1 + . ID=CGI_10003290; scaffold1485 GLEAN promoter 29076 30075 1 - . ID=CGI_10003289; scaffold1485 WUBlastX DNA_hAT 29569 29778 66 + . . scaffold1485 GLEAN mRNA 29632 31205 1 + . ID=CGI_10003290; scaffold1485 GLEAN promoter 30316 31315 0.638265 + . ID=CGI_10003291; scaffold1485 TRF Tandem_Repeat 30773 31072 519 + . . scaffold1485 GLEAN mRNA 31316 32768 0.638265 + . ID=CGI_10003291; scaffold1485 GLEAN promoter 36092 37091 0.990649 + . ID=CGI_10003292; scaffold1485 WUBlastX LTR_ERV1 36694 36921 52 + . . scaffold1485 GLEAN mRNA 37092 37562 0.990649 + . ID=CGI_10003292; scaffold1485 GLEAN mRNA 39332 48639 0.999437 - . ID=CGI_10003293; scaffold1485 TRF Tandem_Repeat 47885 47909 50 + . . scaffold1485 WUBlastX LINE_RTE-X 48165 48551 133 - . . scaffold1485 WUBlastX LINE_RTE-X 48294 48602 185 - . . scaffold1485 WUBlastX LINE_RTE-X 48601 49017 194 - . . scaffold1485 GLEAN promoter 48640 49639 0.999437 - . ID=CGI_10003293; scaffold1485 WUBlastX LINE_RTE-X 48972 49346 185 - . . scaffold1485 WUBlastX LINE_CR1 49047 49496 41 - . . scaffold1485 TRF Tandem_Repeat 49628 50576 1392 + . . scaffold1485 WUBlastX LINE_RTE-X 66276 66659 88 + . . scaffold1486 GLEAN mRNA 56766 72702 0.282079 - . ID=CGI_10003957; scaffold1486 GLEAN promoter 72703 73702 0.282079 - . ID=CGI_10003957; scaffold1487 GLEAN promoter 4964 5963 0.998504 + . ID=CGI_10001142; scaffold1487 GLEAN mRNA 5964 7289 0.998504 + . ID=CGI_10001142; scaffold1488 TRF Tandem_Repeat 1697 1739 77 + . . scaffold1488 TRF Tandem_Repeat 16078 16123 92 + . . scaffold1488 TRF Tandem_Repeat 20128 20206 149 + . . scaffold1488 GLEAN promoter 24827 25826 0.401053 + . ID=CGI_10005177; scaffold1488 GLEAN mRNA 25827 55917 0.401053 + . ID=CGI_10005177; scaffold1488 TRF Tandem_Repeat 31791 31822 64 + . . scaffold1488 TRF Tandem_Repeat 51863 51912 91 + . . scaffold1488 GLEAN promoter 89513 90512 0.719592 + . ID=CGI_10005179; scaffold1488 GLEAN mRNA 90513 121461 0.719592 + . ID=CGI_10005179; scaffold1488 GLEAN mRNA 90668 95164 0.544341 - . ID=CGI_10005180; scaffold1488 GLEAN promoter 95165 96164 0.544341 - . ID=CGI_10005180; scaffold1488 WUBlastX LINE_RTE-X 96216 96554 32 + . . scaffold1488 WUBlastX LINE_RTE-X 96273 96482 53 + . . scaffold1488 WUBlastX LINE_RTE-X 96285 96545 36 + . . scaffold1488 WUBlastX LINE_RTE-X 99039 99683 167 - . . scaffold1488 WUBlastX LINE_RTE-X 99183 99683 217 - . . scaffold1488 WUBlastX LINE_RTE-X 99748 100038 27 + . . scaffold1488 TRF Tandem_Repeat 115252 115350 99 + . . scaffold1488 TRF Tandem_Repeat 116117 116250 110 + . . scaffold1488 TRF Tandem_Repeat 119396 119936 974 + . . scaffold1489 WUBlastX LTR_Gypsy 155 1180 289 + . . scaffold1489 WUBlastX LTR_Gypsy 362 1180 304 + . . scaffold1489 WUBlastX LTR_Gypsy 569 1291 129 + . . scaffold1489 WUBlastX LTR_Gypsy 1284 1622 54 + . . scaffold1489 WUBlastX LTR_Gypsy 1353 1946 80 + . . scaffold1489 GLEAN mRNA 8306 9257 0.999676 - . ID=CGI_10004844; scaffold1489 GLEAN promoter 9258 10257 0.999676 - . ID=CGI_10004844; scaffold1489 TRF Tandem_Repeat 13105 13214 84 + . . scaffold1489 TRF Tandem_Repeat 13116 13214 127 + . . scaffold1489 TRF Tandem_Repeat 13116 13214 121 + . . scaffold1489 TRF Tandem_Repeat 24938 24968 53 + . . scaffold1489 GLEAN mRNA 32716 43077 0.267397 - . ID=CGI_10004845; scaffold1489 TRF Tandem_Repeat 41270 41376 171 + . . scaffold1489 GLEAN promoter 43078 44077 0.267397 - . ID=CGI_10004845; scaffold1489 TRF Tandem_Repeat 48956 49016 68 + . . scaffold1489 GLEAN mRNA 49066 56008 0.999351 - . ID=CGI_10004846; scaffold1489 GLEAN promoter 56009 57008 0.999351 - . ID=CGI_10004846; scaffold1489 TRF Tandem_Repeat 56919 57953 1661 + . . scaffold1489 WUBlastX RC_Helitron 64458 70424 2978 - . . scaffold1489 WUBlastX RC_Helitron 65145 70205 3204 - . . scaffold1489 WUBlastX DNA_Helitron 67890 71072 1724 - . . scaffold1489 WUBlastX RC_Helitron 69762 71834 304 - . . scaffold1489 GLEAN mRNA 74843 86032 0.998829 - . ID=CGI_10004847; scaffold1489 GLEAN promoter 86033 87032 0.998829 - . ID=CGI_10004847; scaffold1489 GLEAN mRNA 86576 91200 0.814164 - . ID=CGI_10004848; scaffold1489 TRF Tandem_Repeat 87735 87786 52 + . . scaffold1489 TRF Tandem_Repeat 88806 88869 66 + . . scaffold1489 TRF Tandem_Repeat 88810 88870 61 + . . scaffold1489 TRF Tandem_Repeat 90883 90964 157 + . . scaffold1489 GLEAN promoter 91201 92200 0.814164 - . ID=CGI_10004848; scaffold1489 GLEAN mRNA 93433 95216 0.987861 - . ID=CGI_10004849; scaffold1489 GLEAN promoter 95217 96216 0.987861 - . ID=CGI_10004849; scaffold1489 TRF Tandem_Repeat 105200 105227 56 + . . scaffold1489 TRF Tandem_Repeat 106677 106740 119 + . . scaffold1489 TRF Tandem_Repeat 107791 107844 108 + . . scaffold149 GLEAN promoter 1824 2823 1 + . ID=CGI_10025282; scaffold149 GLEAN mRNA 2824 9785 1 + . ID=CGI_10025282; scaffold149 TRF Tandem_Repeat 8185 8215 62 + . . scaffold149 TRF Tandem_Repeat 11929 11976 96 + . . scaffold149 TRF Tandem_Repeat 14156 14209 74 + . . scaffold149 TRF Tandem_Repeat 24511 24559 64 + . . scaffold149 GLEAN mRNA 24711 39578 0.536029 - . ID=CGI_10025283; scaffold149 TRF Tandem_Repeat 31293 31341 71 + . . scaffold149 GLEAN promoter 39579 40578 0.536029 - . ID=CGI_10025283; scaffold149 TRF Tandem_Repeat 40515 40551 74 + . . scaffold149 GLEAN promoter 44154 45153 0.618186 + . ID=CGI_10025284; scaffold149 GLEAN mRNA 45154 45378 0.618186 + . ID=CGI_10025284; scaffold149 GLEAN mRNA 45422 50891 0.425691 - . ID=CGI_10025285; scaffold149 TRF Tandem_Repeat 46763 46802 80 + . . scaffold149 GLEAN promoter 50892 51891 0.425691 - . ID=CGI_10025285; scaffold149 WUBlastX LINE_RTE-X 51243 52274 128 - . . scaffold149 WUBlastX LINE_L2 53025 53630 49 + . . scaffold149 WUBlastX LINE_RTE-BovB 53148 53627 75 + . . scaffold149 WUBlastX LINE_CR1-L2 54241 54309 25 + . . scaffold149 WUBlastX LINE_L2 54389 54712 106 + . . scaffold149 WUBlastX LINE_CR1-L2 54518 54841 48 + . . scaffold149 WUBlastX LINE_L2 55024 55167 45 + . . scaffold149 WUBlastX LINE_CR1-L2 55078 55158 48 + . . scaffold149 GLEAN promoter 57681 58680 0.964876 + . ID=CGI_10025286; scaffold149 GLEAN mRNA 58681 64602 0.964876 + . ID=CGI_10025286; scaffold149 GLEAN promoter 66635 67634 0.943997 + . ID=CGI_10025287; scaffold149 GLEAN mRNA 67635 68135 0.943997 + . ID=CGI_10025287; scaffold149 WUBlastX LINE_L1-Tx1 68531 68905 238 + . . scaffold149 WUBlastX LINE_L1-Tx1 68881 69816 434 + . . scaffold149 WUBlastX LINE_L1-Tx1 69872 70426 87 + . . scaffold149 TRF Tandem_Repeat 70548 70598 84 + . . scaffold149 WUBlastX DNA_TcMar-Tc1 71505 72143 251 + . . scaffold149 WUBlastX DNA_TcMar-Tc1 71634 72137 294 + . . scaffold149 GLEAN mRNA 73771 79003 0.790513 - . ID=CGI_10025288; scaffold149 GLEAN promoter 79004 80003 0.790513 - . ID=CGI_10025288; scaffold149 GLEAN promoter 82928 83927 0.964877 + . ID=CGI_10025289; scaffold149 GLEAN mRNA 83928 102929 0.964877 + . ID=CGI_10025289; scaffold149 WUBlastX LINE_L2 85595 85804 41 - . . scaffold149 TRF Tandem_Repeat 90086 90137 104 + . . scaffold149 TRF Tandem_Repeat 100259 100294 54 + . . scaffold149 GLEAN promoter 106962 107961 0.899792 + . ID=CGI_10025290; scaffold149 GLEAN mRNA 107962 121917 0.899792 + . ID=CGI_10025290; scaffold149 WUBlastX LTR_Gypsy 112798 113088 25 + . . scaffold149 TRF Tandem_Repeat 113132 113196 130 + . . scaffold149 TRF Tandem_Repeat 113548 113617 95 + . . scaffold149 TRF Tandem_Repeat 113548 113617 95 + . . scaffold149 GLEAN mRNA 118402 135214 0.537204 - . ID=CGI_10025291; scaffold149 GLEAN promoter 125595 126594 0.615707 + . ID=CGI_10025292; scaffold149 GLEAN mRNA 126595 126843 0.615707 + . ID=CGI_10025292; scaffold149 TRF Tandem_Repeat 128228 128471 364 + . . scaffold149 TRF Tandem_Repeat 131982 132021 80 + . . scaffold149 TRF Tandem_Repeat 133933 133976 63 + . . scaffold149 GLEAN promoter 135215 136214 0.537204 - . ID=CGI_10025291; scaffold149 TRF Tandem_Repeat 144680 144725 92 + . . scaffold149 TRF Tandem_Repeat 150561 150679 98 + . . scaffold149 TRF Tandem_Repeat 150564 150637 76 + . . scaffold149 TRF Tandem_Repeat 150569 150646 74 + . . scaffold149 TRF Tandem_Repeat 150592 150676 75 + . . scaffold149 TRF Tandem_Repeat 150644 150678 70 + . . scaffold149 WUBlastX LINE_RTE-X 151077 151196 82 + . . scaffold149 WUBlastX LINE_RTE-X 151199 151300 28 + . . scaffold149 WUBlastX LINE_RTE-X 151199 151366 26 + . . scaffold149 GLEAN promoter 152345 153344 0.728287 + . ID=CGI_10025293; scaffold149 GLEAN mRNA 153345 165007 0.728287 + . ID=CGI_10025293; scaffold149 TRF Tandem_Repeat 161506 162042 300 + . . scaffold149 TRF Tandem_Repeat 161506 162042 435 + . . scaffold149 GLEAN promoter 175447 176446 0.998924 + . ID=CGI_10025294; scaffold149 GLEAN mRNA 176447 178183 0.998924 + . ID=CGI_10025294; scaffold149 WUBlastX DNA_hAT 176516 177865 286 + . . scaffold149 TRF Tandem_Repeat 179085 179120 72 + . . scaffold149 GLEAN mRNA 179199 193397 0.990232 - . ID=CGI_10025295; scaffold149 TRF Tandem_Repeat 185949 186090 230 + . . scaffold149 WUBlastX LINE_L1-Tx1 191490 191666 34 + . . scaffold149 WUBlastX LINE_L1 191758 191988 21 + . . scaffold149 WUBlastX LINE_L1-Tx1 192057 192422 42 + . . scaffold149 WUBlastX LINE_L1-Tx1 192117 192629 114 + . . scaffold149 GLEAN promoter 193398 194397 0.990232 - . ID=CGI_10025295; scaffold149 TRF Tandem_Repeat 216585 216651 80 + . . scaffold149 WUBlastX LINE_L1-Tx1 229634 229900 36 - . . scaffold149 WUBlastX LINE_L1 230992 231138 45 - . . scaffold149 WUBlastX LINE_L1-Tx1 231028 231144 69 - . . scaffold149 WUBlastX LINE_L1-Tx1 231140 232297 371 - . . scaffold149 WUBlastX LINE_L1-Tx1 231143 232114 639 - . . scaffold149 WUBlastX LINE_L1-Tx1 232140 232790 246 - . . scaffold149 WUBlastX LINE_L1-Tx1 232792 233385 346 - . . scaffold149 WUBlastX LINE_L1-Tx1 233315 233464 94 - . . scaffold149 WUBlastX LINE_L1-Tx1 233327 233500 41 - . . scaffold149 GLEAN mRNA 233711 233881 0.960172 - . ID=CGI_10025296; scaffold149 WUBlastX LINE_RTE-BovB 233753 234058 80 - . . scaffold149 WUBlastX LINE_L2 233753 234508 43 - . . scaffold149 WUBlastX LINE_L2 233780 234265 66 - . . scaffold149 GLEAN promoter 233882 234881 0.960172 - . ID=CGI_10025296; scaffold149 TRF Tandem_Repeat 234360 234412 70 + . . scaffold149 TRF Tandem_Repeat 246814 246863 100 + . . scaffold149 TRF Tandem_Repeat 257949 258735 986 + . . scaffold149 TRF Tandem_Repeat 268369 268401 66 + . . scaffold149 TRF Tandem_Repeat 270128 270154 54 + . . scaffold149 WUBlastX LINE_RTE-X 270420 270761 68 - . . scaffold149 WUBlastX LINE_RTE-X 270480 270812 93 - . . scaffold149 WUBlastX LINE_RTE-X 270546 270794 109 - . . scaffold149 WUBlastX LINE_RTE-X 270851 271342 114 - . . scaffold149 WUBlastX LINE_RTE-X 270932 271333 140 - . . scaffold149 WUBlastX LINE_RTE-X 271377 271625 26 - . . scaffold149 WUBlastX LINE_RTE-X 271377 271526 53 - . . scaffold149 TRF Tandem_Repeat 273580 273617 76 + . . scaffold149 TRF Tandem_Repeat 283595 283631 74 + . . scaffold149 TRF Tandem_Repeat 283644 283674 62 + . . scaffold149 GLEAN promoter 285385 286384 0.935125 + . ID=CGI_10025297; scaffold149 GLEAN mRNA 286385 302078 0.935125 + . ID=CGI_10025297; scaffold149 GLEAN mRNA 294600 302138 1 - . ID=CGI_10025298; scaffold149 TRF Tandem_Repeat 298526 298568 86 + . . scaffold149 TRF Tandem_Repeat 298588 298653 132 + . . scaffold149 GLEAN promoter 302139 303138 1 - . ID=CGI_10025298; scaffold149 GLEAN promoter 307246 308245 0.217101 + . ID=CGI_10025300; scaffold149 GLEAN mRNA 307335 309275 0.999647 - . ID=CGI_10025299; scaffold149 GLEAN mRNA 308246 356402 0.217101 + . ID=CGI_10025300; scaffold149 GLEAN promoter 309276 310275 0.999647 - . ID=CGI_10025299; scaffold149 TRF Tandem_Repeat 311285 311330 83 + . . scaffold149 TRF Tandem_Repeat 346251 346277 54 + . . scaffold149 WUBlastX LINE_L1-Tx1 347409 347561 24 - . . scaffold149 WUBlastX LINE_L1-Tx1 347825 348085 57 - . . scaffold149 WUBlastX LINE_L1-Tx1 348067 348189 56 - . . scaffold149 GLEAN mRNA 348893 349219 0.618241 - . ID=CGI_10025301; scaffold149 GLEAN promoter 349220 350219 0.618241 - . ID=CGI_10025301; scaffold149 TRF Tandem_Repeat 352090 352131 57 + . . scaffold149 TRF Tandem_Repeat 392319 392349 62 + . . scaffold149 TRF Tandem_Repeat 393542 393595 67 + . . scaffold149 WUBlastX LINE_L1-Tx1 394496 394918 36 - . . scaffold149 WUBlastX LINE_L1 394905 394970 34 - . . scaffold149 TRF Tandem_Repeat 398073 398144 144 + . . scaffold149 TRF Tandem_Repeat 400435 400472 76 + . . scaffold149 TRF Tandem_Repeat 415747 415812 69 + . . scaffold149 TRF Tandem_Repeat 417028 417111 69 + . . scaffold149 GLEAN mRNA 417123 420871 1 - . ID=CGI_10025302; scaffold149 TRF Tandem_Repeat 420728 420796 138 + . . scaffold149 GLEAN promoter 420872 421871 1 - . ID=CGI_10025302; scaffold149 WUBlastX LINE_L1-Tx1 424567 424644 25 + . . scaffold149 WUBlastX LINE_L1-Tx1 424682 425014 65 + . . scaffold149 WUBlastX LINE_L1-Tx1 424910 425080 22 + . . scaffold149 WUBlastX LINE_L1 425968 427578 267 + . . scaffold149 WUBlastX LINE_L1-Tx1 425974 427308 427 + . . scaffold149 WUBlastX LINE_L1-Tx1 427307 428110 143 + . . scaffold149 WUBlastX LINE_L1-Tx1 428145 428270 34 + . . scaffold149 WUBlastX LINE_L1 436341 437264 184 - . . scaffold149 WUBlastX LINE_L1-Tx1 436386 437165 343 - . . scaffold149 TRF Tandem_Repeat 438551 438592 84 + . . scaffold149 TRF Tandem_Repeat 461852 461910 109 + . . scaffold149 GLEAN mRNA 467722 490597 0.67799 - . ID=CGI_10025303; scaffold149 TRF Tandem_Repeat 488401 488425 50 + . . scaffold149 GLEAN promoter 490598 491597 0.67799 - . ID=CGI_10025303; scaffold149 TRF Tandem_Repeat 494473 494506 68 + . . scaffold149 GLEAN mRNA 495630 503137 0.997893 - . ID=CGI_10025304; scaffold149 TRF Tandem_Repeat 497551 498174 489 + . . scaffold149 TRF Tandem_Repeat 497551 498174 561 + . . scaffold149 TRF Tandem_Repeat 497551 498174 519 + . . scaffold149 TRF Tandem_Repeat 497993 498185 255 + . . scaffold149 TRF Tandem_Repeat 502215 502271 105 + . . scaffold149 GLEAN promoter 503138 504137 0.997893 - . ID=CGI_10025304; scaffold149 GLEAN mRNA 503490 503831 0.617024 - . ID=CGI_10025305; scaffold149 GLEAN promoter 503832 504831 0.617024 - . ID=CGI_10025305; scaffold149 TRF Tandem_Repeat 505553 505600 96 + . . scaffold149 TRF Tandem_Repeat 522284 522336 61 + . . scaffold149 TRF Tandem_Repeat 522284 522335 59 + . . scaffold149 TRF Tandem_Repeat 522285 522323 60 + . . scaffold149 TRF Tandem_Repeat 525582 525617 72 + . . scaffold149 TRF Tandem_Repeat 528620 528652 66 + . . scaffold149 TRF Tandem_Repeat 530379 530496 159 + . . scaffold149 TRF Tandem_Repeat 530496 530540 90 + . . scaffold149 GLEAN promoter 534278 535277 0.999962 + . ID=CGI_10025306; scaffold149 GLEAN mRNA 535278 546060 0.999962 + . ID=CGI_10025306; scaffold149 WUBlastX LTR_Gypsy 548046 548261 72 - . . scaffold149 GLEAN mRNA 553117 566688 0.999351 - . ID=CGI_10025307; scaffold149 TRF Tandem_Repeat 555664 555731 109 + . . scaffold149 TRF Tandem_Repeat 556101 556223 173 + . . scaffold149 GLEAN promoter 566689 567688 0.999351 - . ID=CGI_10025307; scaffold149 TRF Tandem_Repeat 568934 568992 118 + . . scaffold149 TRF Tandem_Repeat 571402 571437 63 + . . scaffold149 TRF Tandem_Repeat 572988 573033 92 + . . scaffold149 TRF Tandem_Repeat 574365 574416 95 + . . scaffold149 TRF Tandem_Repeat 582005 582035 62 + . . scaffold149 GLEAN promoter 583854 584853 0.922469 + . ID=CGI_10025308; scaffold149 TRF Tandem_Repeat 584298 584332 70 + . . scaffold149 GLEAN mRNA 584854 590268 0.922469 + . ID=CGI_10025308; scaffold149 TRF Tandem_Repeat 587342 587393 104 + . . scaffold149 TRF Tandem_Repeat 588106 588155 100 + . . scaffold149 WUBlastX LTR_Ngaro 589564 589653 30 - . . scaffold149 WUBlastX LTR_Ngaro 589647 589880 27 - . . scaffold149 GLEAN promoter 589774 590773 0.999676 + . ID=CGI_10025309; scaffold149 GLEAN mRNA 590774 592865 0.999676 + . ID=CGI_10025309; scaffold149 GLEAN promoter 593251 594250 1 + . ID=CGI_10025310; scaffold149 GLEAN mRNA 594251 599499 1 + . ID=CGI_10025310; scaffold149 GLEAN mRNA 600732 603242 1 - . ID=CGI_10025311; scaffold149 TRF Tandem_Repeat 601123 601157 70 + . . scaffold149 GLEAN promoter 603243 604242 1 - . ID=CGI_10025311; scaffold149 TRF Tandem_Repeat 608526 608566 73 + . . scaffold149 GLEAN mRNA 618631 623519 0.999675 - . ID=CGI_10025312; scaffold149 WUBlastX LINE_L1-Tx1 622657 623472 54 + . . scaffold149 GLEAN promoter 623520 624519 0.999675 - . ID=CGI_10025312; scaffold149 WUBlastX LINE_RTE-X 631652 632011 107 - . . scaffold149 WUBlastX LINE_I 631655 632143 39 - . . scaffold149 WUBlastX LINE_L1 632150 632779 247 - . . scaffold149 WUBlastX LINE_L2 632156 632890 112 - . . scaffold149 WUBlastX LINE_L1 632174 633058 34 - . . scaffold149 GLEAN promoter 632695 633694 0.618058 + . ID=CGI_10025313; scaffold149 GLEAN mRNA 633695 633907 0.618058 + . ID=CGI_10025313; scaffold149 WUBlastX DNA_Harbinger 633715 633858 58 + . . scaffold149 WUBlastX DNA_Harbinger 633718 633897 47 + . . scaffold149 GLEAN promoter 634690 635689 0.999652 + . ID=CGI_10025314; scaffold149 TRF Tandem_Repeat 635448 635504 114 + . . scaffold149 GLEAN mRNA 635690 646961 0.999652 + . ID=CGI_10025314; scaffold149 TRF Tandem_Repeat 636747 636787 82 + . . scaffold149 TRF Tandem_Repeat 662347 662395 98 + . . scaffold149 TRF Tandem_Repeat 671511 671574 87 + . . scaffold149 TRF Tandem_Repeat 687003 687056 67 + . . scaffold149 GLEAN promoter 695181 696180 0.640828 + . ID=CGI_10025315; scaffold149 TRF Tandem_Repeat 695709 695757 98 + . . scaffold149 GLEAN mRNA 696181 703977 0.640828 + . ID=CGI_10025315; scaffold149 TRF Tandem_Repeat 697031 697265 327 + . . scaffold149 TRF Tandem_Repeat 700091 700303 264 + . . scaffold149 TRF Tandem_Repeat 704410 704999 1072 + . . scaffold149 TRF Tandem_Repeat 704410 704999 1072 + . . scaffold149 GLEAN mRNA 708173 717446 0.936556 - . ID=CGI_10025316; scaffold149 TRF Tandem_Repeat 709350 709397 96 + . . scaffold149 TRF Tandem_Repeat 709920 710253 487 + . . scaffold149 TRF Tandem_Repeat 711059 711336 303 + . . scaffold149 TRF Tandem_Repeat 713104 713266 132 + . . scaffold149 GLEAN promoter 717447 718446 0.936556 - . ID=CGI_10025316; scaffold149 TRF Tandem_Repeat 724482 724540 95 + . . scaffold149 TRF Tandem_Repeat 728350 728811 861 + . . scaffold149 TRF Tandem_Repeat 729220 729290 60 + . . scaffold149 TRF Tandem_Repeat 730804 730924 134 + . . scaffold149 TRF Tandem_Repeat 732872 733180 126 + . . scaffold149 TRF Tandem_Repeat 732872 733180 490 + . . scaffold149 GLEAN mRNA 734812 742515 1 - . ID=CGI_10025317; scaffold149 GLEAN promoter 741549 742548 0.776639 + . ID=CGI_10025318; scaffold149 TRF Tandem_Repeat 741807 741880 148 + . . scaffold149 GLEAN promoter 742430 743429 0.525247 + . ID=CGI_10025319; scaffold149 GLEAN promoter 742516 743515 1 - . ID=CGI_10025317; scaffold149 GLEAN mRNA 742549 742713 0.776639 + . ID=CGI_10025318; scaffold149 GLEAN mRNA 743430 748297 0.525247 + . ID=CGI_10025319; scaffold149 TRF Tandem_Repeat 747392 747536 209 + . . scaffold149 GLEAN mRNA 751008 752598 0.994132 - . ID=CGI_10025320; scaffold149 GLEAN promoter 752599 753598 0.994132 - . ID=CGI_10025320; scaffold149 TRF Tandem_Repeat 765384 765472 153 + . . scaffold149 TRF Tandem_Repeat 770078 770169 152 + . . scaffold149 TRF Tandem_Repeat 770198 770227 60 + . . scaffold149 TRF Tandem_Repeat 772861 772913 106 + . . scaffold149 TRF Tandem_Repeat 775584 775608 50 + . . scaffold149 GLEAN mRNA 777070 781118 0.999983 - . ID=CGI_10025321; scaffold149 TRF Tandem_Repeat 778133 778946 862 + . . scaffold149 TRF Tandem_Repeat 779128 779389 463 + . . scaffold149 GLEAN promoter 781119 782118 0.999983 - . ID=CGI_10025321; scaffold149 TRF Tandem_Repeat 781138 781375 296 + . . scaffold149 TRF Tandem_Repeat 793109 793202 91 + . . scaffold149 GLEAN mRNA 795729 800992 0.959834 - . ID=CGI_10025322; scaffold149 TRF Tandem_Repeat 800244 800670 402 + . . scaffold149 TRF Tandem_Repeat 800305 800635 446 + . . scaffold149 GLEAN promoter 800993 801992 0.959834 - . ID=CGI_10025322; scaffold149 GLEAN mRNA 801158 838837 0.367052 - . ID=CGI_10025323; scaffold149 TRF Tandem_Repeat 801780 804374 3468 + . . scaffold149 TRF Tandem_Repeat 805539 805605 62 + . . scaffold149 TRF Tandem_Repeat 806245 807739 1393 + . . scaffold149 TRF Tandem_Repeat 807664 807733 55 + . . scaffold149 TRF Tandem_Repeat 809734 809838 76 + . . scaffold149 GLEAN promoter 815960 816959 1 + . ID=CGI_10025324; scaffold149 GLEAN mRNA 816960 819517 1 + . ID=CGI_10025324; scaffold149 TRF Tandem_Repeat 818429 818689 384 + . . scaffold149 TRF Tandem_Repeat 823847 824548 567 + . . scaffold149 TRF Tandem_Repeat 823884 824547 851 + . . scaffold149 TRF Tandem_Repeat 823884 824540 828 + . . scaffold149 TRF Tandem_Repeat 825189 825761 722 + . . scaffold149 TRF Tandem_Repeat 827131 828975 2358 + . . scaffold149 TRF Tandem_Repeat 827131 828975 2358 + . . scaffold149 TRF Tandem_Repeat 827131 828060 1518 + . . scaffold149 TRF Tandem_Repeat 827896 828922 1080 + . . scaffold149 TRF Tandem_Repeat 828130 828975 639 + . . scaffold149 TRF Tandem_Repeat 830496 830996 860 + . . scaffold149 TRF Tandem_Repeat 830496 830996 851 + . . scaffold149 TRF Tandem_Repeat 831463 831892 675 + . . scaffold149 TRF Tandem_Repeat 835798 836459 994 + . . scaffold149 GLEAN promoter 838838 839837 0.367052 - . ID=CGI_10025323; scaffold149 GLEAN mRNA 843607 859739 0.923707 - . ID=CGI_10025325; scaffold149 TRF Tandem_Repeat 845719 845754 56 + . . scaffold149 TRF Tandem_Repeat 846637 847018 204 + . . scaffold149 TRF Tandem_Repeat 849202 849507 477 + . . scaffold149 GLEAN promoter 850861 851860 0.999995 + . ID=CGI_10025326; scaffold149 TRF Tandem_Repeat 851255 851312 109 + . . scaffold149 TRF Tandem_Repeat 851341 851419 115 + . . scaffold149 GLEAN mRNA 851861 852679 0.999995 + . ID=CGI_10025326; scaffold149 GLEAN promoter 855131 856130 1 + . ID=CGI_10025327; scaffold149 TRF Tandem_Repeat 855497 855555 118 + . . scaffold149 GLEAN mRNA 856131 856994 1 + . ID=CGI_10025327; scaffold149 GLEAN promoter 859740 860739 0.923707 - . ID=CGI_10025325; scaffold149 GLEAN mRNA 861057 877198 0.660124 - . ID=CGI_10025328; scaffold149 TRF Tandem_Repeat 862547 862583 74 + . . scaffold149 TRF Tandem_Repeat 866750 867088 180 + . . scaffold149 TRF Tandem_Repeat 866750 867089 181 + . . scaffold149 TRF Tandem_Repeat 866766 867079 83 + . . scaffold149 TRF Tandem_Repeat 866921 867092 139 + . . scaffold149 GLEAN promoter 877199 878198 0.660124 - . ID=CGI_10025328; scaffold149 GLEAN mRNA 879864 884651 0.672148 - . ID=CGI_10025329; scaffold149 TRF Tandem_Repeat 881751 882153 465 + . . scaffold149 TRF Tandem_Repeat 882387 882808 519 + . . scaffold149 TRF Tandem_Repeat 882987 883600 1012 + . . scaffold149 GLEAN promoter 884652 885651 0.672148 - . ID=CGI_10025329; scaffold149 TRF Tandem_Repeat 885473 885677 356 + . . scaffold149 TRF Tandem_Repeat 886519 886545 54 + . . scaffold149 TRF Tandem_Repeat 887273 887313 82 + . . scaffold149 TRF Tandem_Repeat 887665 887714 100 + . . scaffold149 TRF Tandem_Repeat 888916 888973 116 + . . scaffold149 TRF Tandem_Repeat 888971 889042 54 + . . scaffold149 TRF Tandem_Repeat 889040 889070 53 + . . scaffold149 WUBlastX LTR_Gypsy 890818 893136 1468 - . . scaffold149 WUBlastX LTR_Gypsy 894619 895491 197 - . . scaffold149 GLEAN promoter 896350 897349 0.724901 + . ID=CGI_10025330; scaffold149 GLEAN mRNA 897350 904187 0.724901 + . ID=CGI_10025330; scaffold149 TRF Tandem_Repeat 899225 899357 184 + . . scaffold149 TRF Tandem_Repeat 901877 902070 280 + . . scaffold149 TRF Tandem_Repeat 902177 902204 56 + . . scaffold149 TRF Tandem_Repeat 905668 905713 92 + . . scaffold149 TRF Tandem_Repeat 906841 907663 1005 + . . scaffold149 GLEAN mRNA 911522 915619 1 - . ID=CGI_10025331; scaffold149 TRF Tandem_Repeat 912432 912466 70 + . . scaffold149 TRF Tandem_Repeat 914135 914313 313 + . . scaffold149 TRF Tandem_Repeat 915105 915236 192 + . . scaffold149 TRF Tandem_Repeat 915135 915235 121 + . . scaffold149 GLEAN promoter 915620 916619 1 - . ID=CGI_10025331; scaffold149 TRF Tandem_Repeat 916494 916556 126 + . . scaffold149 GLEAN promoter 917275 918274 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 917568 917644 77 + . . scaffold149 GLEAN mRNA 918275 948623 0.635384 + . ID=CGI_10025332; scaffold149 TRF Tandem_Repeat 919330 919449 91 + . . scaffold149 TRF Tandem_Repeat 919343 919495 152 + . . scaffold149 TRF Tandem_Repeat 919697 920121 294 + . . scaffold149 TRF Tandem_Repeat 919824 920177 195 + . . scaffold149 TRF Tandem_Repeat 919827 920049 58 + . . scaffold149 TRF Tandem_Repeat 924526 924575 84 + . . scaffold149 TRF Tandem_Repeat 926003 927316 1577 + . . scaffold149 TRF Tandem_Repeat 928303 928338 72 + . . scaffold149 TRF Tandem_Repeat 930055 930097 59 + . . scaffold149 TRF Tandem_Repeat 931180 931596 200 + . . scaffold149 TRF Tandem_Repeat 931180 931688 778 + . . scaffold149 TRF Tandem_Repeat 931675 931817 200 + . . scaffold149 TRF Tandem_Repeat 938135 938187 79 + . . scaffold149 TRF Tandem_Repeat 938135 938221 88 + . . scaffold149 TRF Tandem_Repeat 938141 938227 97 + . . scaffold149 TRF Tandem_Repeat 938169 938225 96 + . . scaffold149 TRF Tandem_Repeat 938513 938624 102 + . . scaffold149 TRF Tandem_Repeat 939539 939596 116 + . . scaffold149 TRF Tandem_Repeat 939790 939826 74 + . . scaffold149 TRF Tandem_Repeat 940626 942045 1364 + . . scaffold149 GLEAN mRNA 948392 959761 0.932291 - . ID=CGI_10025333; scaffold149 WUBlastX LINE_L1-Tx1 958887 959000 36 - . . scaffold149 WUBlastX LINE_L1-Tx1 958976 959122 28 - . . scaffold149 GLEAN promoter 959762 960761 0.932291 - . ID=CGI_10025333; scaffold149 TRF Tandem_Repeat 964311 965071 370 + . . scaffold149 TRF Tandem_Repeat 964319 965071 1128 + . . scaffold149 TRF Tandem_Repeat 964462 965063 422 + . . scaffold149 TRF Tandem_Repeat 964462 965062 392 + . . scaffold149 TRF Tandem_Repeat 974609 974662 99 + . . scaffold149 GLEAN promoter 976738 977737 0.998126 + . ID=CGI_10025334; scaffold149 WUBlastX LINE_Penelope 977573 977809 44 + . . scaffold149 WUBlastX LINE_Penelope 977573 977905 39 + . . scaffold149 GLEAN mRNA 977738 985587 0.998126 + . ID=CGI_10025334; scaffold149 TRF Tandem_Repeat 978561 978590 51 + . . scaffold149 GLEAN mRNA 978994 980181 0.999826 - . ID=CGI_10025335; scaffold149 GLEAN promoter 980182 981181 0.999826 - . ID=CGI_10025335; scaffold149 GLEAN promoter 984609 985608 0.984964 + . ID=CGI_10025336; scaffold149 GLEAN mRNA 985609 986073 0.984964 + . ID=CGI_10025336; scaffold149 GLEAN mRNA 989278 1013104 0.999502 - . ID=CGI_10025337; scaffold149 GLEAN promoter 997861 998860 1 + . ID=CGI_10025338; scaffold149 GLEAN mRNA 998861 1001294 1 + . ID=CGI_10025338; scaffold149 WUBlastX DNA_Harbinger 998912 999298 158 + . . scaffold149 TRF Tandem_Repeat 999745 1000016 203 + . . scaffold149 TRF Tandem_Repeat 1000791 1001049 194 + . . scaffold149 WUBlastX DNA_Harbinger 1001157 1001276 97 + . . scaffold149 WUBlastX DNA_Harbinger 1002046 1002180 60 + . . scaffold149 WUBlastX DNA_Harbinger 1002246 1002368 76 + . . scaffold149 WUBlastX DNA_Harbinger 1002433 1002699 128 + . . scaffold149 GLEAN promoter 1013105 1014104 0.999502 - . ID=CGI_10025337; scaffold149 TRF Tandem_Repeat 1020689 1020760 117 + . . scaffold149 WUBlastX LINE_Penelope 1021971 1022420 70 + . . scaffold149 TRF Tandem_Repeat 1027190 1027240 102 + . . scaffold149 TRF Tandem_Repeat 1028011 1028071 113 + . . scaffold149 GLEAN mRNA 1029286 1055668 0.813477 - . ID=CGI_10025339; scaffold149 TRF Tandem_Repeat 1035843 1035893 57 + . . scaffold149 WUBlastX DNA_TcMar-Marin 1037202 1037396 25 - . . scaffold149 WUBlastX DNA_TcMar-Marin 1037253 1037450 48 - . . scaffold149 WUBlastX DNA_TcMar-Marin 1037802 1038020 42 - . . scaffold149 TRF Tandem_Repeat 1042362 1042453 98 + . . scaffold149 TRF Tandem_Repeat 1042530 1042689 196 + . . scaffold149 TRF Tandem_Repeat 1042919 1043012 82 + . . scaffold149 TRF Tandem_Repeat 1049460 1049593 83 + . . scaffold149 TRF Tandem_Repeat 1053988 1054035 53 + . . scaffold149 TRF Tandem_Repeat 1053988 1054035 53 + . . scaffold149 GLEAN promoter 1055669 1056668 0.813477 - . ID=CGI_10025339; scaffold1490 GLEAN promoter 5025 6024 0.523219 + . ID=CGI_10014903; scaffold1490 GLEAN mRNA 6025 16835 0.523219 + . ID=CGI_10014903; scaffold1490 TRF Tandem_Repeat 8831 8878 64 + . . scaffold1490 TRF Tandem_Repeat 10449 10496 96 + . . scaffold1490 TRF Tandem_Repeat 12013 12134 217 + . . scaffold1490 GLEAN promoter 18342 19341 0.998217 + . ID=CGI_10014904; scaffold1490 GLEAN mRNA 19342 22822 0.998217 + . ID=CGI_10014904; scaffold1490 WUBlastX LINE_CR1 32548 32622 24 + . . scaffold1490 WUBlastX LINE_L2 33389 33847 85 + . . scaffold1490 WUBlastX LINE_L2 33503 33847 175 + . . scaffold1490 WUBlastX LINE_L2 33802 34542 348 + . . scaffold1490 GLEAN mRNA 36055 39969 1 - . ID=CGI_10014905; scaffold1490 GLEAN promoter 39970 40969 1 - . ID=CGI_10014905; scaffold1490 GLEAN mRNA 43792 46491 0.613941 - . ID=CGI_10014906; scaffold1490 GLEAN promoter 46492 47491 0.613941 - . ID=CGI_10014906; scaffold1490 TRF Tandem_Repeat 47232 47286 74 + . . scaffold1490 GLEAN promoter 77068 78067 0.888418 + . ID=CGI_10014907; scaffold1490 GLEAN mRNA 78068 78815 0.888418 + . ID=CGI_10014907; scaffold1490 TRF Tandem_Repeat 79448 79478 62 + . . scaffold1490 TRF Tandem_Repeat 80109 80161 97 + . . scaffold1490 WUBlastX DNA_Harbinger 80831 81040 122 + . . scaffold1490 WUBlastX DNA_Harbinger 81089 81133 36 + . . scaffold1490 WUBlastX DNA_Harbinger 81092 81151 21 + . . scaffold1490 WUBlastX DNA_Harbinger 81288 81557 90 + . . scaffold1490 WUBlastX DNA_Harbinger 81396 81557 116 + . . scaffold1490 TRF Tandem_Repeat 82636 82713 102 + . . scaffold1490 TRF Tandem_Repeat 82636 82713 129 + . . scaffold1490 GLEAN mRNA 91194 96385 0.692842 - . ID=CGI_10014908; scaffold1490 GLEAN promoter 95453 96452 0.842441 + . ID=CGI_10014909; scaffold1490 GLEAN promoter 96386 97385 0.692842 - . ID=CGI_10014908; scaffold1490 GLEAN mRNA 96453 102109 0.842441 + . ID=CGI_10014909; scaffold1490 TRF Tandem_Repeat 99869 100676 1062 + . . scaffold1490 TRF Tandem_Repeat 101852 101880 58 + . . scaffold1490 TRF Tandem_Repeat 120261 121505 1791 + . . scaffold1490 GLEAN mRNA 133810 149803 0.325964 - . ID=CGI_10014910; scaffold1490 TRF Tandem_Repeat 140641 140675 61 + . . scaffold1490 GLEAN promoter 149804 150803 0.325964 - . ID=CGI_10014910; scaffold1490 TRF Tandem_Repeat 154143 154236 79 + . . scaffold1490 WUBlastX LTR_Gypsy 155820 155930 21 + . . scaffold1490 WUBlastX LTR_Gypsy 155820 155909 37 + . . scaffold1490 WUBlastX LTR_Gypsy 156011 156592 90 + . . scaffold1490 WUBlastX LTR_Gypsy 156101 156592 366 + . . scaffold1490 WUBlastX LTR_Gypsy 156592 157089 299 + . . scaffold1490 WUBlastX LTR_Gypsy 156613 157182 200 + . . scaffold1490 WUBlastX LTR_Gypsy 157109 157267 47 + . . scaffold1490 WUBlastX LTR_Gypsy 157266 157439 65 + . . scaffold1490 WUBlastX LTR_Gypsy 157269 157511 50 + . . scaffold1490 TRF Tandem_Repeat 157736 157786 86 + . . scaffold1490 GLEAN mRNA 166070 166723 0.978042 - . ID=CGI_10014911; scaffold1490 GLEAN promoter 166724 167723 0.978042 - . ID=CGI_10014911; scaffold1490 GLEAN promoter 169500 170499 0.659104 + . ID=CGI_10014912; scaffold1490 GLEAN mRNA 170500 224827 0.659104 + . ID=CGI_10014912; scaffold1490 GLEAN mRNA 178977 181742 0.821321 - . ID=CGI_10014913; scaffold1490 GLEAN promoter 181743 182742 0.821321 - . ID=CGI_10014913; scaffold1490 TRF Tandem_Repeat 189129 189364 359 + . . scaffold1490 TRF Tandem_Repeat 190642 192307 2093 + . . scaffold1490 TRF Tandem_Repeat 195936 196421 632 + . . scaffold1490 TRF Tandem_Repeat 198938 200102 1358 + . . scaffold1490 TRF Tandem_Repeat 198938 200100 1372 + . . scaffold1490 WUBlastX DNA_NOF 201456 201608 40 + . . scaffold1490 WUBlastX DNA_NOF 201743 201994 37 + . . scaffold1490 WUBlastX DNA_NOF 202186 202485 213 + . . scaffold1490 WUBlastX DNA_NOF 202713 202949 117 + . . scaffold1490 TRF Tandem_Repeat 206021 206121 157 + . . scaffold1490 TRF Tandem_Repeat 206358 206466 148 + . . scaffold1490 WUBlastX DNA_NOF 206842 207033 70 + . . scaffold1490 WUBlastX DNA_NOF 207392 207880 104 + . . scaffold1490 WUBlastX DNA_NOF 207395 208099 88 + . . scaffold1490 TRF Tandem_Repeat 213498 215018 1965 + . . scaffold1490 TRF Tandem_Repeat 213533 215018 2098 + . . scaffold1490 TRF Tandem_Repeat 217447 217768 608 + . . scaffold1490 TRF Tandem_Repeat 222367 222730 422 + . . scaffold1490 GLEAN promoter 224676 225675 0.998976 + . ID=CGI_10014914; scaffold1490 GLEAN mRNA 225676 250177 0.998976 + . ID=CGI_10014914; scaffold1490 TRF Tandem_Repeat 229561 229859 292 + . . scaffold1490 TRF Tandem_Repeat 229561 229863 298 + . . scaffold1490 TRF Tandem_Repeat 229925 230317 680 + . . scaffold1490 TRF Tandem_Repeat 229925 230807 687 + . . scaffold1490 TRF Tandem_Repeat 230317 230807 716 + . . scaffold1490 TRF Tandem_Repeat 230807 231367 713 + . . scaffold1490 TRF Tandem_Repeat 236735 238022 1672 + . . scaffold1490 TRF Tandem_Repeat 236735 238334 2080 + . . scaffold1490 TRF Tandem_Repeat 238028 238334 479 + . . scaffold1490 TRF Tandem_Repeat 239383 240234 1047 + . . scaffold1490 TRF Tandem_Repeat 245854 246304 861 + . . scaffold1490 TRF Tandem_Repeat 253328 253636 476 + . . scaffold1490 TRF Tandem_Repeat 253328 253634 276 + . . scaffold1490 TRF Tandem_Repeat 253698 254466 815 + . . scaffold1490 TRF Tandem_Repeat 253737 253839 72 + . . scaffold1490 TRF Tandem_Repeat 253823 254451 820 + . . scaffold1490 TRF Tandem_Repeat 253946 254055 85 + . . scaffold1490 TRF Tandem_Repeat 254253 254386 83 + . . scaffold1490 GLEAN promoter 257312 258311 1 + . ID=CGI_10014915; scaffold1490 GLEAN mRNA 258312 262622 1 + . ID=CGI_10014915; scaffold1490 GLEAN promoter 270505 271504 0.998207 + . ID=CGI_10014916; scaffold1490 GLEAN mRNA 271505 279362 0.998207 + . ID=CGI_10014916; scaffold1490 TRF Tandem_Repeat 275128 275504 578 + . . scaffold1490 TRF Tandem_Repeat 277234 277506 268 + . . scaffold1490 TRF Tandem_Repeat 277268 277506 207 + . . scaffold1490 GLEAN mRNA 280111 293863 0.833888 - . ID=CGI_10014917; scaffold1490 TRF Tandem_Repeat 284587 284979 137 + . . scaffold1490 TRF Tandem_Repeat 284699 284956 113 + . . scaffold1490 GLEAN promoter 293864 294863 0.833888 - . ID=CGI_10014917; scaffold1490 GLEAN promoter 301225 302224 1 + . ID=CGI_10014918; scaffold1490 GLEAN mRNA 302225 316925 1 + . ID=CGI_10014918; scaffold1490 TRF Tandem_Repeat 302385 302564 227 + . . scaffold1490 TRF Tandem_Repeat 314741 315353 744 + . . scaffold1490 TRF Tandem_Repeat 317361 317419 52 + . . scaffold1490 GLEAN promoter 319277 320276 1 + . ID=CGI_10014919; scaffold1490 GLEAN mRNA 320277 320498 1 + . ID=CGI_10014919; scaffold1490 TRF Tandem_Repeat 324087 324111 50 + . . scaffold1490 TRF Tandem_Repeat 324358 324382 50 + . . scaffold1490 GLEAN promoter 324864 325863 0.819804 + . ID=CGI_10014920; scaffold1490 GLEAN mRNA 325864 360900 0.819804 + . ID=CGI_10014920; scaffold1490 TRF Tandem_Repeat 331736 332000 442 + . . scaffold1490 TRF Tandem_Repeat 337622 337743 140 + . . scaffold1490 TRF Tandem_Repeat 337622 338192 167 + . . scaffold1490 TRF Tandem_Repeat 337622 338192 290 + . . scaffold1490 TRF Tandem_Repeat 337637 338185 270 + . . scaffold1490 TRF Tandem_Repeat 337802 338192 284 + . . scaffold1490 TRF Tandem_Repeat 337804 338192 256 + . . scaffold1490 TRF Tandem_Repeat 353647 353768 115 + . . scaffold1490 TRF Tandem_Repeat 353827 354416 496 + . . scaffold1490 TRF Tandem_Repeat 353960 354407 613 + . . scaffold1490 GLEAN mRNA 355810 355959 0.570051 - . ID=CGI_10014921; scaffold1490 GLEAN promoter 355960 356959 0.570051 - . ID=CGI_10014921; scaffold1490 GLEAN promoter 363682 364681 0.830306 + . ID=CGI_10014922; scaffold1490 GLEAN mRNA 364682 370369 0.830306 + . ID=CGI_10014922; scaffold1490 GLEAN promoter 375771 376770 0.920012 + . ID=CGI_10014923; scaffold1490 GLEAN mRNA 376771 397004 0.920012 + . ID=CGI_10014923; scaffold1490 TRF Tandem_Repeat 378019 378049 62 + . . scaffold1490 TRF Tandem_Repeat 384035 384073 60 + . . scaffold1490 WUBlastX LINE_L1 392935 393474 30 + . . scaffold1490 GLEAN promoter 397900 398899 1 + . ID=CGI_10014924; scaffold1490 GLEAN mRNA 398900 399867 1 + . ID=CGI_10014924; scaffold1490 GLEAN mRNA 402073 406321 0.999998 - . ID=CGI_10014925; scaffold1490 GLEAN promoter 406322 407321 0.999998 - . ID=CGI_10014925; scaffold1490 TRF Tandem_Repeat 409465 410722 1793 + . . scaffold1491 GLEAN mRNA 1863 17674 0.99909 - . ID=CGI_10005609; scaffold1491 TRF Tandem_Repeat 13855 13909 110 + . . scaffold1491 TRF Tandem_Repeat 14498 14537 80 + . . scaffold1491 GLEAN promoter 17675 18674 0.99909 - . ID=CGI_10005609; scaffold1491 GLEAN promoter 23360 24359 1 + . ID=CGI_10005610; scaffold1491 GLEAN mRNA 24360 26824 1 + . ID=CGI_10005610; scaffold1491 GLEAN mRNA 31088 45459 0.999419 - . ID=CGI_10005611; scaffold1491 GLEAN promoter 45460 46459 0.999419 - . ID=CGI_10005611; scaffold1491 GLEAN mRNA 47099 47422 0.999372 - . ID=CGI_10005612; scaffold1491 WUBlastX LTR_Gypsy 47351 47695 52 - . . scaffold1491 GLEAN promoter 47423 48422 0.999372 - . ID=CGI_10005612; scaffold1491 GLEAN mRNA 49083 49403 0.999984 - . ID=CGI_10005613; scaffold1491 GLEAN promoter 49404 50403 0.999984 - . ID=CGI_10005613; scaffold1491 TRF Tandem_Repeat 50542 50584 77 + . . scaffold1491 TRF Tandem_Repeat 50585 50623 78 + . . scaffold1491 TRF Tandem_Repeat 53151 53209 68 + . . scaffold1491 GLEAN mRNA 54160 60525 0.998725 - . ID=CGI_10005614; scaffold1491 TRF Tandem_Repeat 58552 59542 914 + . . scaffold1491 GLEAN promoter 60526 61525 0.998725 - . ID=CGI_10005614; scaffold1491 WUBlastX LINE_L2 79897 80436 22 + . . scaffold1491 TRF Tandem_Repeat 91645 91765 179 + . . scaffold1491 TRF Tandem_Repeat 95268 95389 183 + . . scaffold1491 TRF Tandem_Repeat 95278 95406 130 + . . scaffold1491 GLEAN mRNA 99150 109169 0.90545 - . ID=CGI_10005615; scaffold1491 TRF Tandem_Repeat 100172 100259 114 + . . scaffold1491 GLEAN promoter 109170 110169 0.90545 - . ID=CGI_10005615; scaffold1491 GLEAN mRNA 109176 110975 0.808126 - . ID=CGI_10005616; scaffold1491 GLEAN promoter 110976 111975 0.808126 - . ID=CGI_10005616; scaffold1491 GLEAN mRNA 112301 112549 0.776794 - . ID=CGI_10005617; scaffold1491 GLEAN promoter 112550 113549 0.776794 - . ID=CGI_10005617; scaffold1491 TRF Tandem_Repeat 114886 114929 88 + . . scaffold1491 GLEAN mRNA 118582 120760 0.702487 - . ID=CGI_10005618; scaffold1491 GLEAN promoter 120761 121760 0.702487 - . ID=CGI_10005618; scaffold1491 TRF Tandem_Repeat 129835 129859 50 + . . scaffold1491 TRF Tandem_Repeat 130846 130951 90 + . . scaffold1492 TRF Tandem_Repeat 1656 1729 141 + . . scaffold1492 GLEAN mRNA 1897 16561 1 - . ID=CGI_10012067; scaffold1492 TRF Tandem_Repeat 10098 10177 133 + . . scaffold1492 TRF Tandem_Repeat 10554 10612 118 + . . scaffold1492 TRF Tandem_Repeat 10847 11132 473 + . . scaffold1492 TRF Tandem_Repeat 11134 11159 52 + . . scaffold1492 GLEAN promoter 15838 16837 1 + . ID=CGI_10012068; scaffold1492 TRF Tandem_Repeat 15959 16001 86 + . . scaffold1492 GLEAN promoter 16562 17561 1 - . ID=CGI_10012067; scaffold1492 GLEAN mRNA 16838 21862 1 + . ID=CGI_10012068; scaffold1492 TRF Tandem_Repeat 16939 16993 110 + . . scaffold1492 TRF Tandem_Repeat 22207 22256 66 + . . scaffold1492 TRF Tandem_Repeat 22208 22253 58 + . . scaffold1492 TRF Tandem_Repeat 26435 26479 56 + . . scaffold1492 GLEAN mRNA 32204 47796 0.999675 - . ID=CGI_10012069; scaffold1492 TRF Tandem_Repeat 36013 36183 169 + . . scaffold1492 GLEAN promoter 47797 48796 0.999675 - . ID=CGI_10012069; scaffold1492 TRF Tandem_Repeat 57952 58033 164 + . . scaffold1492 TRF Tandem_Repeat 58384 58420 65 + . . scaffold1492 TRF Tandem_Repeat 58787 58854 136 + . . scaffold1492 TRF Tandem_Repeat 66513 66558 76 + . . scaffold1492 TRF Tandem_Repeat 73256 73309 108 + . . scaffold1492 TRF Tandem_Repeat 77440 77480 82 + . . scaffold1492 TRF Tandem_Repeat 79085 79159 150 + . . scaffold1492 TRF Tandem_Repeat 80358 80424 134 + . . scaffold1492 TRF Tandem_Repeat 80670 80705 72 + . . scaffold1492 WUBlastX LINE_L1-Tx1 82728 83192 77 - . . scaffold1492 WUBlastX LINE_L1-Tx1 82815 83192 85 - . . scaffold1492 WUBlastX LINE_L1 82866 83489 68 - . . scaffold1492 WUBlastX LINE_L1-Tx1 83477 83803 41 - . . scaffold1492 WUBlastX LINE_L1 83811 83897 27 - . . scaffold1492 WUBlastX LINE_L1-Tx1 83833 84219 85 - . . scaffold1492 WUBlastX LINE_L1-Tx1 84196 84420 61 - . . scaffold1492 WUBlastX LINE_L1 84419 84664 54 - . . scaffold1492 WUBlastX LINE_L1 84419 84619 85 - . . scaffold1492 GLEAN promoter 85045 86044 0.99872 + . ID=CGI_10012070; scaffold1492 GLEAN mRNA 86045 86941 0.99872 + . ID=CGI_10012070; scaffold1492 GLEAN promoter 86158 87157 0.999364 + . ID=CGI_10012071; scaffold1492 GLEAN mRNA 87158 87619 0.999364 + . ID=CGI_10012071; scaffold1492 TRF Tandem_Repeat 88953 88992 80 + . . scaffold1492 GLEAN promoter 89558 90557 0.999995 + . ID=CGI_10012072; scaffold1492 GLEAN mRNA 90558 100898 0.999995 + . ID=CGI_10012072; scaffold1492 GLEAN promoter 103444 104443 0.989938 + . ID=CGI_10012073; scaffold1492 GLEAN mRNA 104444 105863 0.989938 + . ID=CGI_10012073; scaffold1492 GLEAN promoter 104909 105908 0.999676 + . ID=CGI_10012074; scaffold1492 GLEAN mRNA 105909 108043 0.999676 + . ID=CGI_10012074; scaffold1492 TRF Tandem_Repeat 106527 106577 102 + . . scaffold1492 GLEAN promoter 107502 108501 0.558395 + . ID=CGI_10012075; scaffold1492 GLEAN mRNA 108502 121370 0.558395 + . ID=CGI_10012075; scaffold1492 TRF Tandem_Repeat 109512 109613 91 + . . scaffold1492 TRF Tandem_Repeat 109524 109690 115 + . . scaffold1492 TRF Tandem_Repeat 111055 111087 66 + . . scaffold1492 TRF Tandem_Repeat 119486 119515 51 + . . scaffold1492 TRF Tandem_Repeat 124004 124042 78 + . . scaffold1492 GLEAN mRNA 126018 133959 1 - . ID=CGI_10012076; scaffold1492 GLEAN promoter 133960 134959 1 - . ID=CGI_10012076; scaffold1492 TRF Tandem_Repeat 148094 148119 52 + . . scaffold1492 GLEAN mRNA 151666 160346 0.996496 - . ID=CGI_10012077; scaffold1492 TRF Tandem_Repeat 152821 152867 87 + . . scaffold1492 TRF Tandem_Repeat 158262 158307 83 + . . scaffold1492 GLEAN promoter 159727 160726 0.999351 + . ID=CGI_10012078; scaffold1492 GLEAN promoter 160347 161346 0.996496 - . ID=CGI_10012077; scaffold1492 GLEAN mRNA 160727 169356 0.999351 + . ID=CGI_10012078; scaffold1492 GLEAN promoter 171740 172739 1 + . ID=CGI_10012079; scaffold1492 GLEAN mRNA 172740 173141 1 + . ID=CGI_10012079; scaffold1492 GLEAN promoter 172803 173802 1 + . ID=CGI_10012080; scaffold1492 GLEAN mRNA 173803 174147 1 + . ID=CGI_10012080; scaffold1492 GLEAN promoter 175166 176165 0.815977 + . ID=CGI_10012081; scaffold1492 GLEAN mRNA 176166 192088 0.815977 + . ID=CGI_10012081; scaffold1492 TRF Tandem_Repeat 176354 176402 50 + . . scaffold1492 TRF Tandem_Repeat 182035 182108 148 + . . scaffold1492 TRF Tandem_Repeat 184231 187454 6448 + . . scaffold1492 TRF Tandem_Repeat 189375 189419 72 + . . scaffold1492 TRF Tandem_Repeat 195968 196227 217 + . . scaffold1492 TRF Tandem_Repeat 207243 207295 106 + . . scaffold1492 TRF Tandem_Repeat 207339 207369 62 + . . scaffold1492 TRF Tandem_Repeat 234841 234871 62 + . . scaffold1492 GLEAN promoter 235767 236766 1 + . ID=CGI_10012082; scaffold1492 GLEAN promoter 236406 237405 0.558395 + . ID=CGI_10012083; scaffold1492 GLEAN mRNA 236767 237202 1 + . ID=CGI_10012082; scaffold1492 GLEAN mRNA 237406 246753 0.558395 + . ID=CGI_10012083; scaffold1492 TRF Tandem_Repeat 238649 238739 101 + . . scaffold1492 GLEAN promoter 252353 253352 1 + . ID=CGI_10012084; scaffold1492 GLEAN mRNA 253353 254809 1 + . ID=CGI_10012084; scaffold1492 TRF Tandem_Repeat 256660 256713 108 + . . scaffold1492 TRF Tandem_Repeat 256772 256821 100 + . . scaffold1492 GLEAN mRNA 257061 274600 1 - . ID=CGI_10012085; scaffold1492 TRF Tandem_Repeat 267666 267710 90 + . . scaffold1492 TRF Tandem_Repeat 273030 273080 102 + . . scaffold1492 TRF Tandem_Repeat 273078 273103 52 + . . scaffold1492 TRF Tandem_Repeat 273359 273405 76 + . . scaffold1492 GLEAN promoter 274601 275600 1 - . ID=CGI_10012085; scaffold1492 TRF Tandem_Repeat 282482 282535 90 + . . scaffold1492 GLEAN mRNA 291423 291695 0.593348 - . ID=CGI_10012087; scaffold1492 GLEAN promoter 291696 292695 0.593348 - . ID=CGI_10012087; scaffold1492 GLEAN promoter 296399 297398 0.531613 + . ID=CGI_10012088; scaffold1492 GLEAN mRNA 297399 298667 0.531613 + . ID=CGI_10012088; scaffold1492 WUBlastX LINE_Penelope 302627 302827 20 - . . scaffold1492 WUBlastX LINE_Penelope 302666 302827 24 - . . scaffold1492 GLEAN promoter 304124 305123 1 + . ID=CGI_10012090; scaffold1492 GLEAN mRNA 304336 304650 1 - . ID=CGI_10012089; scaffold1492 GLEAN promoter 304651 305650 1 - . ID=CGI_10012089; scaffold1492 GLEAN mRNA 305124 306887 1 + . ID=CGI_10012090; scaffold1493 GLEAN promoter 10465 11464 1 + . ID=CGI_10006736; scaffold1493 GLEAN mRNA 11465 19397 1 + . ID=CGI_10006736; scaffold1493 GLEAN mRNA 23993 28245 1 - . ID=CGI_10006737; scaffold1493 TRF Tandem_Repeat 26752 28045 1883 + . . scaffold1493 TRF Tandem_Repeat 28069 28134 105 + . . scaffold1493 TRF Tandem_Repeat 28069 28126 71 + . . scaffold1493 TRF Tandem_Repeat 28069 28130 97 + . . scaffold1493 TRF Tandem_Repeat 28076 28135 57 + . . scaffold1493 GLEAN promoter 28246 29245 1 - . ID=CGI_10006737; scaffold1493 WUBlastX DNA_TcMar-Marin 33487 33711 67 + . . scaffold1493 GLEAN promoter 33742 34741 0.999351 + . ID=CGI_10006738; scaffold1493 GLEAN mRNA 34742 42344 0.999351 + . ID=CGI_10006738; scaffold1493 TRF Tandem_Repeat 40762 41086 569 + . . scaffold1493 GLEAN mRNA 45330 54963 0.62639 - . ID=CGI_10006739; scaffold1493 GLEAN promoter 54964 55963 0.62639 - . ID=CGI_10006739; scaffold1493 GLEAN mRNA 56268 57452 1 - . ID=CGI_10006740; scaffold1493 GLEAN promoter 57453 58452 1 - . ID=CGI_10006740; scaffold1493 GLEAN promoter 59202 60201 1 + . ID=CGI_10006741; scaffold1493 GLEAN mRNA 60202 63110 1 + . ID=CGI_10006741; scaffold1493 TRF Tandem_Repeat 63686 64772 1721 + . . scaffold1493 GLEAN promoter 67626 68625 0.99155 + . ID=CGI_10006742; scaffold1493 GLEAN mRNA 68626 94456 0.99155 + . ID=CGI_10006742; scaffold1493 WUBlastX DNA_Harbinger 92973 93449 153 + . . scaffold1493 TRF Tandem_Repeat 93831 93877 94 + . . scaffold1493 WUBlastX DNA_Harbinger 94283 94336 21 + . . scaffold1493 TRF Tandem_Repeat 94701 94755 78 + . . scaffold1493 TRF Tandem_Repeat 101614 101806 115 + . . scaffold1493 TRF Tandem_Repeat 102256 102356 96 + . . scaffold1493 WUBlastX LTR_Ngaro 112835 113494 200 + . . scaffold1493 WUBlastX LTR_Ngaro 113012 113461 226 + . . scaffold1493 WUBlastX LTR_Ngaro 113063 113605 101 + . . scaffold1493 WUBlastX LTR_Ngaro 113852 114103 75 + . . scaffold1493 WUBlastX LTR_Ngaro 113943 114569 316 + . . scaffold1493 WUBlastX LTR_Ngaro 114497 114811 158 + . . scaffold1493 WUBlastX LTR_Ngaro 114816 115154 181 + . . scaffold1493 WUBlastX LTR_Ngaro 114876 115277 87 + . . scaffold1493 WUBlastX LTR_Ngaro 115264 115323 29 + . . scaffold1493 GLEAN mRNA 121328 141809 0.414594 - . ID=CGI_10006743; scaffold1493 TRF Tandem_Repeat 140798 140839 84 + . . scaffold1493 GLEAN promoter 141810 142809 0.414594 - . ID=CGI_10006743; scaffold1493 WUBlastX LINE_L1-Tx1 143240 144130 174 - . . scaffold1493 TRF Tandem_Repeat 145391 145457 80 + . . scaffold1493 TRF Tandem_Repeat 147268 147301 68 + . . scaffold1493 TRF Tandem_Repeat 147648 147929 152 + . . scaffold1493 TRF Tandem_Repeat 147843 147929 138 + . . scaffold1493 TRF Tandem_Repeat 147932 148204 99 + . . scaffold1493 GLEAN promoter 150289 151288 1 + . ID=CGI_10006744; scaffold1493 GLEAN mRNA 151289 154845 1 + . ID=CGI_10006744; scaffold1493 TRF Tandem_Repeat 153581 153626 85 + . . scaffold1493 TRF Tandem_Repeat 156295 156464 206 + . . scaffold1493 TRF Tandem_Repeat 156483 156595 129 + . . scaffold1494 GLEAN mRNA 789 4041 1 - . ID=CGI_10000675; scaffold1494 GLEAN promoter 4042 5041 1 - . ID=CGI_10000675; scaffold1494 GLEAN mRNA 4092 7182 0.660618 - . ID=CGI_10000676; scaffold1494 GLEAN promoter 7183 8182 0.660618 - . ID=CGI_10000676; scaffold1495 WUBlastX LINE_RTE-X 531 3158 819 - . . scaffold1495 WUBlastX LINE_Jockey 3114 3200 32 - . . scaffold1495 WUBlastX LTR_Pao 42844 48789 4019 - . . scaffold1495 TRF Tandem_Repeat 48934 48973 53 + . . scaffold1495 GLEAN mRNA 57924 62282 1 - . ID=CGI_10003044; scaffold1495 GLEAN promoter 62283 62979 1 - . ID=CGI_10003044; scaffold1495 GLEAN mRNA 62487 62933 0.481188 - . ID=CGI_10003045; scaffold1495 GLEAN promoter 62934 62979 0.481188 - . ID=CGI_10003045; scaffold1496 GLEAN mRNA 2460 12060 0.960144 - . ID=CGI_10000974; scaffold1496 GLEAN promoter 12061 12998 0.960144 - . ID=CGI_10000974; scaffold1497 GLEAN promoter 14026 15025 0.836332 + . ID=CGI_10006959; scaffold1497 GLEAN mRNA 15026 34353 0.836332 + . ID=CGI_10006959; scaffold1497 TRF Tandem_Repeat 17476 17527 104 + . . scaffold1497 TRF Tandem_Repeat 17642 17689 96 + . . scaffold1497 TRF Tandem_Repeat 22418 22447 51 + . . scaffold1497 WUBlastX DNA_Kolobok 24509 24751 68 + . . scaffold1497 WUBlastX DNA_Kolobok 24907 25080 53 + . . scaffold1497 GLEAN mRNA 35203 35502 0.884487 - . ID=CGI_10006960; scaffold1497 GLEAN promoter 35503 36502 0.884487 - . ID=CGI_10006960; scaffold1497 GLEAN mRNA 36278 37837 0.98619 - . ID=CGI_10006962; scaffold1497 GLEAN promoter 37658 38657 0.927373 + . ID=CGI_10006963; scaffold1497 GLEAN promoter 37838 38837 0.98619 - . ID=CGI_10006962; scaffold1497 GLEAN mRNA 38658 42952 0.927373 + . ID=CGI_10006963; scaffold1497 WUBlastX LINE_RTE-X 39727 40815 318 - . . scaffold1497 WUBlastX LINE_RTE-X 40766 41113 204 - . . scaffold1497 WUBlastX LINE_RTE-BovB 40967 41155 57 - . . scaffold1497 TRF Tandem_Repeat 43523 43906 443 + . . scaffold1497 TRF Tandem_Repeat 46857 47220 377 + . . scaffold1497 TRF Tandem_Repeat 46857 47220 406 + . . scaffold1497 TRF Tandem_Repeat 46857 47218 327 + . . scaffold1497 WUBlastX LINE_L1 52170 52775 30 + . . scaffold1497 WUBlastX LINE_L2 52284 52913 101 + . . scaffold1497 WUBlastX LINE_L2 52722 52967 56 + . . scaffold1497 GLEAN promoter 82799 83798 0.991824 + . ID=CGI_10006964; scaffold1497 GLEAN mRNA 83799 88836 0.991824 + . ID=CGI_10006964; scaffold1497 TRF Tandem_Repeat 90099 90130 55 + . . scaffold1497 TRF Tandem_Repeat 93408 93612 358 + . . scaffold1497 GLEAN mRNA 95806 128213 0.600834 - . ID=CGI_10006965; scaffold1497 TRF Tandem_Repeat 110573 110614 84 + . . scaffold1497 GLEAN promoter 128214 129213 0.600834 - . ID=CGI_10006965; scaffold1497 GLEAN promoter 130559 131558 0.478498 + . ID=CGI_10006966; scaffold1497 GLEAN mRNA 131559 140512 0.478498 + . ID=CGI_10006966; scaffold1497 GLEAN mRNA 134425 141098 0.988357 - . ID=CGI_10006967; scaffold1497 TRF Tandem_Repeat 134740 134784 90 + . . scaffold1497 TRF Tandem_Repeat 136097 136140 79 + . . scaffold1497 GLEAN promoter 141099 142098 0.988357 - . ID=CGI_10006967; scaffold1497 GLEAN mRNA 148119 156729 0.749146 - . ID=CGI_10006968; scaffold1497 WUBlastX LINE_I 153377 153457 22 - . . scaffold1497 TRF Tandem_Repeat 155177 155757 858 + . . scaffold1497 GLEAN promoter 156730 157729 0.749146 - . ID=CGI_10006968; scaffold1498 GLEAN promoter 1 114 0.844003 + . ID=CGI_10004755; scaffold1498 GLEAN mRNA 115 13249 0.844003 + . ID=CGI_10004755; scaffold1498 TRF Tandem_Repeat 1432 1462 62 + . . scaffold1498 WUBlastX LINE_L2 2101 2577 97 - . . scaffold1498 TRF Tandem_Repeat 21983 22846 1118 + . . scaffold1498 WUBlastX LTR_Ngaro 23897 24376 207 - . . scaffold1498 WUBlastX LTR_Ngaro 23897 24469 197 - . . scaffold1498 GLEAN promoter 34300 35299 0.284109 + . ID=CGI_10004756; scaffold1498 GLEAN mRNA 35300 49088 0.284109 + . ID=CGI_10004756; scaffold1498 TRF Tandem_Repeat 36282 36325 88 + . . scaffold1498 TRF Tandem_Repeat 36947 36992 92 + . . scaffold1498 TRF Tandem_Repeat 37935 37974 80 + . . scaffold1498 TRF Tandem_Repeat 38415 38444 51 + . . scaffold1498 TRF Tandem_Repeat 43832 43857 52 + . . scaffold1498 TRF Tandem_Repeat 47599 47624 52 + . . scaffold1498 TRF Tandem_Repeat 50615 50687 137 + . . scaffold1498 TRF Tandem_Repeat 52104 52164 60 + . . scaffold1498 TRF Tandem_Repeat 56813 56864 104 + . . scaffold1498 TRF Tandem_Repeat 59496 59584 178 + . . scaffold1498 TRF Tandem_Repeat 65832 66032 246 + . . scaffold1498 GLEAN mRNA 67695 81850 0.907333 - . ID=CGI_10004757; scaffold1498 TRF Tandem_Repeat 67979 68025 85 + . . scaffold1498 GLEAN promoter 81851 82850 0.907333 - . ID=CGI_10004757; scaffold1498 GLEAN promoter 82268 83267 0.999953 + . ID=CGI_10004758; scaffold1498 TRF Tandem_Repeat 83194 83250 114 + . . scaffold1498 GLEAN mRNA 83268 94154 0.999953 + . ID=CGI_10004758; scaffold1498 WUBlastX LINE_L2 90180 91052 450 - . . scaffold1498 WUBlastX LINE_L2 91010 91402 169 - . . scaffold1498 WUBlastX LINE_L2 91387 91611 139 - . . scaffold1498 TRF Tandem_Repeat 92200 92510 223 + . . scaffold1498 TRF Tandem_Repeat 95038 95178 237 + . . scaffold1498 TRF Tandem_Repeat 101079 101135 105 + . . scaffold1499 GLEAN mRNA 210 1770 1 - . ID=CGI_10001713; scaffold1499 GLEAN promoter 1771 2770 1 - . ID=CGI_10001713; scaffold1499 WUBlastX LTR_DIRS 3435 3704 81 - . . scaffold1499 WUBlastX LTR_DIRS 3855 4238 33 - . . scaffold1499 WUBlastX LTR_Gypsy 4107 4277 22 - . . scaffold1499 WUBlastX LTR_DIRS 4422 6539 209 - . . scaffold1499 WUBlastX LTR_DIRS 4722 6404 270 - . . scaffold1499 WUBlastX LTR_Copia 6954 7307 60 - . . scaffold1499 GLEAN promoter 8602 9601 0.999177 + . ID=CGI_10001715; scaffold1499 GLEAN mRNA 9602 26472 0.999177 + . ID=CGI_10001715; scaffold1499 TRF Tandem_Repeat 16179 16221 50 + . . scaffold15 WUBlastX LINE_RTE-X 117 188 29 + . . scaffold15 TRF Tandem_Repeat 3349 3481 92 + . . scaffold15 GLEAN promoter 8822 9821 0.999831 + . ID=CGI_10001332; scaffold15 GLEAN mRNA 9822 10034 0.999831 + . ID=CGI_10001332; scaffold150 TRF Tandem_Repeat 2316 2424 148 + . . scaffold150 TRF Tandem_Repeat 2776 3545 984 + . . scaffold150 TRF Tandem_Repeat 4545 5055 603 + . . scaffold150 TRF Tandem_Repeat 4545 5055 671 + . . scaffold150 TRF Tandem_Repeat 5310 5363 90 + . . scaffold150 TRF Tandem_Repeat 8768 8851 87 + . . scaffold150 TRF Tandem_Repeat 8773 8851 95 + . . scaffold150 TRF Tandem_Repeat 8777 8823 94 + . . scaffold150 TRF Tandem_Repeat 8821 8852 64 + . . scaffold150 TRF Tandem_Repeat 10608 10639 55 + . . scaffold150 TRF Tandem_Repeat 39398 41968 5101 + . . scaffold150 TRF Tandem_Repeat 45186 45306 217 + . . scaffold150 WUBlastX LINE_L1-Tx1 51401 51943 115 + . . scaffold150 WUBlastX LINE_L1 51948 52163 35 + . . scaffold150 TRF Tandem_Repeat 67628 67680 106 + . . scaffold150 WUBlastX LINE_L1 67852 68232 47 - . . scaffold150 WUBlastX LINE_L1-Tx1 67948 68238 81 - . . scaffold150 WUBlastX LINE_L1-Tx1 67996 68238 82 - . . scaffold150 WUBlastX LINE_L1 68241 68522 111 - . . scaffold150 WUBlastX LINE_L1-Tx1 68241 68576 81 - . . scaffold150 WUBlastX LINE_L1-Tx1 68241 68468 112 - . . scaffold150 WUBlastX LINE_L1-Tx1 77153 79825 989 - . . scaffold150 WUBlastX LINE_L1-Tx1 77225 80539 892 - . . scaffold150 WUBlastX LTR_Gypsy-Cigr 80544 81008 175 + . . scaffold150 WUBlastX LTR_Gypsy 80751 81518 79 + . . scaffold150 WUBlastX LTR_Gypsy 81474 81683 89 + . . scaffold150 WUBlastX LTR_Gypsy 81662 81754 37 + . . scaffold150 WUBlastX LTR_ERV1 81823 81972 20 + . . scaffold150 WUBlastX LTR_Gypsy-Cigr 82080 82622 256 + . . scaffold150 WUBlastX LTR_Gypsy-Cigr 82183 83172 309 + . . scaffold150 TRF Tandem_Repeat 83231 84355 1563 + . . scaffold150 TRF Tandem_Repeat 84386 84425 53 + . . scaffold150 WUBlastX LTR_Gypsy 84446 84565 37 + . . scaffold150 WUBlastX LTR_Gypsy 84488 84565 37 + . . scaffold150 WUBlastX LTR_Gypsy 84529 84918 173 + . . scaffold150 WUBlastX LTR_Gypsy-Cigr 84547 84876 304 + . . scaffold150 WUBlastX LTR_Gypsy-Cigr 84932 86239 680 + . . scaffold150 WUBlastX DNA_hAT 87137 87373 30 - . . scaffold150 WUBlastX DNA_hAT-Ac 87236 87373 104 - . . scaffold150 WUBlastX DNA_hAT-Ac 87236 87469 92 - . . scaffold150 WUBlastX DNA_hAT-Ac 87369 87581 40 - . . scaffold150 WUBlastX DNA_hAT-Hobo 87411 87692 23 - . . scaffold150 WUBlastX DNA_hAT-Ac 87778 88320 84 - . . scaffold150 WUBlastX DNA_hAT-Ac 88316 88378 26 - . . scaffold150 TRF Tandem_Repeat 88386 89321 1175 + . . scaffold150 TRF Tandem_Repeat 92596 92642 94 + . . scaffold150 TRF Tandem_Repeat 94296 94325 60 + . . scaffold150 WUBlastX DNA_Kolobok 98929 99210 78 + . . scaffold150 WUBlastX DNA_Kolobok 98998 99210 91 + . . scaffold150 WUBlastX DNA_Kolobok 99336 99584 141 + . . scaffold150 WUBlastX DNA_Kolobok 99680 99862 26 + . . scaffold150 WUBlastX LTR_Ngaro 114394 114783 98 - . . scaffold150 WUBlastX LTR_Ngaro 114400 114690 144 - . . scaffold150 WUBlastX LTR_Ngaro 114848 115216 34 - . . scaffold150 WUBlastX LTR_Ngaro 114866 115108 35 - . . scaffold150 TRF Tandem_Repeat 115414 115443 60 + . . scaffold150 TRF Tandem_Repeat 115602 115631 60 + . . scaffold150 GLEAN promoter 121400 122399 0.986676 + . ID=CGI_10028586; scaffold150 GLEAN mRNA 122400 123278 0.986676 + . ID=CGI_10028586; scaffold150 TRF Tandem_Repeat 125457 125502 83 + . . scaffold150 TRF Tandem_Repeat 125962 126021 120 + . . scaffold150 GLEAN promoter 130580 131579 0.996589 + . ID=CGI_10028587; scaffold150 GLEAN mRNA 131580 133211 0.996589 + . ID=CGI_10028587; scaffold150 TRF Tandem_Repeat 134391 134438 96 + . . scaffold150 TRF Tandem_Repeat 137756 137789 68 + . . scaffold150 TRF Tandem_Repeat 139890 139948 109 + . . scaffold150 GLEAN promoter 141910 142909 0.999661 + . ID=CGI_10028588; scaffold150 GLEAN mRNA 142910 144370 0.999661 + . ID=CGI_10028588; scaffold150 GLEAN promoter 146507 147506 0.530696 + . ID=CGI_10028589; scaffold150 GLEAN mRNA 147507 184963 0.530696 + . ID=CGI_10028589; scaffold150 TRF Tandem_Repeat 153193 153634 649 + . . scaffold150 TRF Tandem_Repeat 153945 154171 310 + . . scaffold150 TRF Tandem_Repeat 157773 157809 74 + . . scaffold150 TRF Tandem_Repeat 157867 157891 50 + . . scaffold150 TRF Tandem_Repeat 160477 160513 74 + . . scaffold150 TRF Tandem_Repeat 160571 160595 50 + . . scaffold150 TRF Tandem_Repeat 183508 183553 76 + . . scaffold150 WUBlastX LINE_CR1 185246 185899 91 + . . scaffold150 WUBlastX LINE_L1-Tx1 186511 186840 66 + . . scaffold150 WUBlastX LINE_L1-Tx1 186792 187115 43 + . . scaffold150 WUBlastX LINE_L1 186885 187184 30 + . . scaffold150 WUBlastX LINE_L1-Tx1 186903 187115 52 + . . scaffold150 WUBlastX LINE_L1-Tx1 187804 187941 32 + . . scaffold150 WUBlastX LINE_L1 187828 187959 59 + . . scaffold150 WUBlastX LINE_L1-Tx1 187849 188145 38 + . . scaffold150 WUBlastX LINE_L1 188285 188446 21 + . . scaffold150 WUBlastX LINE_L1-Tx1 188327 188434 32 + . . scaffold150 TRF Tandem_Repeat 190028 190088 122 + . . scaffold150 TRF Tandem_Repeat 191009 191072 128 + . . scaffold150 TRF Tandem_Repeat 192382 192430 98 + . . scaffold150 TRF Tandem_Repeat 202275 202677 407 + . . scaffold150 GLEAN mRNA 202869 211925 0.738569 - . ID=CGI_10028590; scaffold150 WUBlastX DNA_IS4EU 204603 205397 406 + . . scaffold150 GLEAN promoter 211926 212925 0.738569 - . ID=CGI_10028590; scaffold150 WUBlastX LINE_L2 213356 214165 400 - . . scaffold150 WUBlastX LINE_L2 214180 215496 547 - . . scaffold150 WUBlastX LINE_L2 215492 216538 514 - . . scaffold150 WUBlastX LINE_CR1-L2 215492 216739 315 - . . scaffold150 TRF Tandem_Repeat 219664 219743 160 + . . scaffold150 GLEAN promoter 223010 224009 0.593383 + . ID=CGI_10028591; scaffold150 GLEAN mRNA 224010 241607 0.593383 + . ID=CGI_10028591; scaffold150 WUBlastX DNA_hAT 224267 224578 59 + . . scaffold150 GLEAN mRNA 225439 237186 0.997933 - . ID=CGI_10028592; scaffold150 TRF Tandem_Repeat 225583 225642 93 + . . scaffold150 TRF Tandem_Repeat 225708 225774 55 + . . scaffold150 TRF Tandem_Repeat 225708 225754 60 + . . scaffold150 WUBlastX LINE_RTE-X 230932 231111 103 + . . scaffold150 TRF Tandem_Repeat 231163 231856 1003 + . . scaffold150 TRF Tandem_Repeat 232019 232091 128 + . . scaffold150 GLEAN promoter 237187 238186 0.997933 - . ID=CGI_10028592; scaffold150 WUBlastX DNA_PiggyBac 237995 238162 50 + . . scaffold150 GLEAN mRNA 238975 239247 1 - . ID=CGI_10028593; scaffold150 GLEAN promoter 239248 240247 1 - . ID=CGI_10028593; scaffold150 TRF Tandem_Repeat 272995 273054 68 + . . scaffold150 GLEAN mRNA 274064 280368 0.999804 - . ID=CGI_10028594; scaffold150 GLEAN promoter 280369 281368 0.999804 - . ID=CGI_10028594; scaffold150 GLEAN mRNA 305359 306154 1 - . ID=CGI_10028595; scaffold150 GLEAN promoter 306155 307154 1 - . ID=CGI_10028595; scaffold150 GLEAN mRNA 314718 314933 0.999372 - . ID=CGI_10028596; scaffold150 GLEAN promoter 314934 315933 0.999372 - . ID=CGI_10028596; scaffold150 GLEAN mRNA 316180 316548 1 - . ID=CGI_10028597; scaffold150 GLEAN promoter 316549 317548 1 - . ID=CGI_10028597; scaffold150 GLEAN mRNA 320219 338260 0.102023 - . ID=CGI_10028598; scaffold150 GLEAN promoter 338261 339260 0.102023 - . ID=CGI_10028598; scaffold150 GLEAN promoter 343373 344372 1 + . ID=CGI_10028599; scaffold150 GLEAN mRNA 344373 346355 1 + . ID=CGI_10028599; scaffold150 GLEAN promoter 353314 354313 1 + . ID=CGI_10028600; scaffold150 GLEAN mRNA 354314 356287 1 + . ID=CGI_10028600; scaffold150 GLEAN promoter 358978 359977 1 + . ID=CGI_10028601; scaffold150 TRF Tandem_Repeat 358986 359054 138 + . . scaffold150 GLEAN mRNA 359978 361993 1 + . ID=CGI_10028601; scaffold150 TRF Tandem_Repeat 363726 363792 62 + . . scaffold150 GLEAN promoter 364149 365148 1 + . ID=CGI_10028602; scaffold150 TRF Tandem_Repeat 364304 364347 88 + . . scaffold150 GLEAN mRNA 365149 366123 1 + . ID=CGI_10028602; scaffold150 GLEAN promoter 365247 366246 0.864827 + . ID=CGI_10028603; scaffold150 GLEAN mRNA 366247 368272 0.864827 + . ID=CGI_10028603; scaffold150 TRF Tandem_Repeat 370612 370648 65 + . . scaffold150 GLEAN promoter 370636 371635 0.999912 + . ID=CGI_10028604; scaffold150 GLEAN mRNA 371636 376710 0.999912 + . ID=CGI_10028604; scaffold150 GLEAN mRNA 384089 384511 1 - . ID=CGI_10028605; scaffold150 GLEAN promoter 384512 385511 1 - . ID=CGI_10028605; scaffold150 WUBlastX DNA_Harbinger 390708 390920 79 + . . scaffold150 WUBlastX DNA_Harbinger 393100 393567 104 + . . scaffold150 WUBlastX DNA_Harbinger 393241 393564 322 + . . scaffold150 TRF Tandem_Repeat 393572 393604 66 + . . scaffold150 TRF Tandem_Repeat 393604 393641 76 + . . scaffold150 WUBlastX DNA_Harbinger 393714 394052 288 + . . scaffold150 WUBlastX DNA_Harbinger 394256 394306 32 + . . scaffold150 GLEAN mRNA 394960 395505 0.643635 - . ID=CGI_10028606; scaffold150 GLEAN promoter 395506 396505 0.643635 - . ID=CGI_10028606; scaffold150 WUBlastX DNA_Harbinger 396060 396215 90 - . . scaffold150 WUBlastX DNA_Harbinger 396164 396421 87 - . . scaffold150 GLEAN mRNA 402302 406152 0.988482 - . ID=CGI_10028607; scaffold150 GLEAN promoter 406153 407152 0.988482 - . ID=CGI_10028607; scaffold150 TRF Tandem_Repeat 407152 407184 66 + . . scaffold150 TRF Tandem_Repeat 407433 407471 78 + . . scaffold150 TRF Tandem_Repeat 407755 407807 106 + . . scaffold150 TRF Tandem_Repeat 408766 408804 78 + . . scaffold150 TRF Tandem_Repeat 409094 409139 74 + . . scaffold150 TRF Tandem_Repeat 409350 410597 1689 + . . scaffold150 TRF Tandem_Repeat 409350 410578 1710 + . . scaffold150 TRF Tandem_Repeat 414326 414361 54 + . . scaffold150 TRF Tandem_Repeat 421187 421414 203 + . . scaffold150 GLEAN mRNA 424145 437123 0.342812 - . ID=CGI_10028608; scaffold150 TRF Tandem_Repeat 425604 425662 55 + . . scaffold150 TRF Tandem_Repeat 425604 425660 51 + . . scaffold150 TRF Tandem_Repeat 432619 432655 65 + . . scaffold150 TRF Tandem_Repeat 433168 433254 77 + . . scaffold150 TRF Tandem_Repeat 433169 433230 60 + . . scaffold150 TRF Tandem_Repeat 433250 433340 82 + . . scaffold150 GLEAN promoter 437124 438123 0.342812 - . ID=CGI_10028608; scaffold150 TRF Tandem_Repeat 438948 439549 825 + . . scaffold150 GLEAN promoter 439940 440939 0.995484 + . ID=CGI_10028609; scaffold150 GLEAN mRNA 440940 442586 0.995484 + . ID=CGI_10028609; scaffold150 WUBlastX LTR_Pao 440943 442571 290 + . . scaffold150 WUBlastX LTR_Pao 441258 442574 320 + . . scaffold150 WUBlastX LTR_Pao 441864 442571 336 + . . scaffold150 WUBlastX LTR_Pao 442047 442604 364 + . . scaffold150 WUBlastX LTR_Pao 443701 444048 313 + . . scaffold150 WUBlastX LTR_Pao 444051 445028 804 + . . scaffold150 WUBlastX LTR_Pao 445021 445311 116 + . . scaffold150 WUBlastX LTR_Pao 445316 445813 331 + . . scaffold150 WUBlastX LINE_L1-Tx1 445794 445904 60 - . . scaffold150 WUBlastX LINE_L1-Tx1 445864 446292 183 - . . scaffold150 WUBlastX LINE_L1 445894 446373 24 - . . scaffold150 TRF Tandem_Repeat 452456 452536 56 + . . scaffold150 TRF Tandem_Repeat 471134 471177 79 + . . scaffold150 TRF Tandem_Repeat 474807 474848 84 + . . scaffold150 TRF Tandem_Repeat 474900 474932 66 + . . scaffold150 GLEAN promoter 476730 477729 0.999999 + . ID=CGI_10028610; scaffold150 GLEAN mRNA 477730 477951 0.999999 + . ID=CGI_10028610; scaffold150 TRF Tandem_Repeat 497314 497339 52 + . . scaffold150 WUBlastX LINE_RTE-X 501773 502036 45 + . . scaffold150 WUBlastX LINE_RTE-X 501815 502000 47 + . . scaffold150 TRF Tandem_Repeat 502258 502298 73 + . . scaffold150 TRF Tandem_Repeat 502376 502430 110 + . . scaffold150 WUBlastX LINE_L2 506027 506185 28 - . . scaffold150 WUBlastX LINE_L2 506149 506817 33 - . . scaffold150 WUBlastX LINE_CR1-L2 506416 506757 90 - . . scaffold150 WUBlastX LINE_CR1-L2 506557 506820 55 - . . scaffold150 GLEAN mRNA 511383 521169 1 - . ID=CGI_10028611; scaffold150 TRF Tandem_Repeat 518826 518877 104 + . . scaffold150 GLEAN promoter 521170 522169 1 - . ID=CGI_10028611; scaffold150 GLEAN promoter 525126 526125 0.999997 + . ID=CGI_10028612; scaffold150 TRF Tandem_Repeat 525519 525584 64 + . . scaffold150 GLEAN mRNA 526126 531695 0.999997 + . ID=CGI_10028612; scaffold150 GLEAN promoter 531020 532019 0.618008 + . ID=CGI_10028613; scaffold150 GLEAN mRNA 532020 532706 0.618008 + . ID=CGI_10028613; scaffold150 WUBlastX LINE_L1 532038 532664 29 + . . scaffold150 WUBlastX LINE_L1 532134 532664 68 + . . scaffold150 WUBlastX LINE_L1 532212 532853 41 + . . scaffold150 WUBlastX LINE_L1-Tx1 532933 533031 25 + . . scaffold150 WUBlastX LINE_L1-Tx1 534006 534140 27 + . . scaffold150 WUBlastX LINE_L1-Tx1 534033 534164 41 + . . scaffold150 WUBlastX LINE_L1-Tx1 534033 534140 54 + . . scaffold150 WUBlastX LINE_L1-Tx1 534178 534720 126 + . . scaffold150 WUBlastX LINE_L1-Tx1 534423 535823 458 + . . scaffold150 WUBlastX LINE_L1-Tx1 536940 539162 792 - . . scaffold150 WUBlastX LINE_L1-Tx1 536997 539582 712 - . . scaffold150 WUBlastX LINE_L1-Tx1 539458 539670 50 - . . scaffold150 WUBlastX LINE_L1 539631 539822 26 - . . scaffold150 WUBlastX LINE_L1 539670 539789 46 - . . scaffold150 WUBlastX LINE_L1-Tx1 540585 540746 20 - . . scaffold150 WUBlastX LINE_L1 540585 540707 58 - . . scaffold150 GLEAN mRNA 540784 540966 0.999372 - . ID=CGI_10028614; scaffold150 GLEAN promoter 540967 541966 0.999372 - . ID=CGI_10028614; scaffold150 WUBlastX LINE_L1 541072 541869 89 + . . scaffold150 WUBlastX LINE_L1 541312 541890 141 + . . scaffold150 WUBlastX LINE_L1-Tx1 541429 542043 286 + . . scaffold150 WUBlastX LINE_L1-Tx1 542022 542234 118 + . . scaffold150 WUBlastX LINE_L1-Tx1 542243 543091 201 + . . scaffold150 WUBlastX LINE_L1-Tx1 543088 543273 36 + . . scaffold150 GLEAN promoter 546869 547868 1 + . ID=CGI_10028615; scaffold150 GLEAN mRNA 547869 552301 1 + . ID=CGI_10028615; scaffold150 TRF Tandem_Repeat 560613 560885 235 + . . scaffold150 TRF Tandem_Repeat 561777 561945 130 + . . scaffold150 TRF Tandem_Repeat 561783 561953 118 + . . scaffold150 TRF Tandem_Repeat 575722 575753 64 + . . scaffold150 WUBlastX LINE_L1-Tx1 577525 577908 58 + . . scaffold150 WUBlastX LINE_L1-Tx1 577696 577917 59 + . . scaffold150 WUBlastX LINE_L1 577946 578377 30 + . . scaffold150 WUBlastX LINE_L1 577946 578098 33 + . . scaffold150 WUBlastX LINE_L1 578596 578835 42 + . . scaffold150 WUBlastX LINE_L1 578835 578984 45 + . . scaffold150 WUBlastX LINE_L1 578835 578960 52 + . . scaffold150 WUBlastX LINE_L1-Tx1 578835 579032 40 + . . scaffold150 GLEAN promoter 590454 591453 0.472758 + . ID=CGI_10028616; scaffold150 GLEAN mRNA 591454 628379 0.472758 + . ID=CGI_10028616; scaffold150 TRF Tandem_Repeat 602901 603270 486 + . . scaffold150 TRF Tandem_Repeat 610580 611607 452 + . . scaffold150 TRF Tandem_Repeat 610580 611607 408 + . . scaffold150 TRF Tandem_Repeat 611828 612041 261 + . . scaffold150 TRF Tandem_Repeat 623741 624399 933 + . . scaffold150 TRF Tandem_Repeat 626492 626529 58 + . . scaffold150 GLEAN mRNA 661368 665520 1 - . ID=CGI_10028617; scaffold150 GLEAN promoter 664995 665994 0.99846 + . ID=CGI_10028618; scaffold150 GLEAN promoter 665521 666520 1 - . ID=CGI_10028617; scaffold150 GLEAN mRNA 665995 676224 0.99846 + . ID=CGI_10028618; scaffold150 GLEAN promoter 679024 680023 0.998504 + . ID=CGI_10028619; scaffold150 GLEAN mRNA 680024 685018 0.998504 + . ID=CGI_10028619; scaffold150 GLEAN mRNA 683608 684157 0.993634 - . ID=CGI_10028620; scaffold150 GLEAN promoter 684158 685157 0.993634 - . ID=CGI_10028620; scaffold150 GLEAN mRNA 691396 698268 0.999675 - . ID=CGI_10028621; scaffold150 TRF Tandem_Repeat 692034 692064 62 + . . scaffold150 GLEAN promoter 698269 699268 0.999675 - . ID=CGI_10028621; scaffold150 GLEAN mRNA 725128 729295 0.999754 - . ID=CGI_10028622; scaffold150 GLEAN promoter 729296 730295 0.999754 - . ID=CGI_10028622; scaffold150 GLEAN promoter 731546 732545 0.990752 + . ID=CGI_10028623; scaffold150 GLEAN mRNA 732546 756362 0.990752 + . ID=CGI_10028623; scaffold150 TRF Tandem_Repeat 739568 739678 54 + . . scaffold150 TRF Tandem_Repeat 739575 739673 78 + . . scaffold150 TRF Tandem_Repeat 748110 748249 271 + . . scaffold150 WUBlastX RC_Helitron 754504 754827 50 + . . scaffold150 GLEAN promoter 756883 757882 0.984163 + . ID=CGI_10028624; scaffold150 GLEAN mRNA 757883 772537 0.984163 + . ID=CGI_10028624; scaffold150 GLEAN mRNA 757918 772055 0.999429 - . ID=CGI_10028625; scaffold150 TRF Tandem_Repeat 760619 761702 1482 + . . scaffold150 TRF Tandem_Repeat 762931 762976 57 + . . scaffold150 TRF Tandem_Repeat 762934 762975 50 + . . scaffold150 WUBlastX DNA_Kolobok-Hyd 765640 765993 64 + . . scaffold150 TRF Tandem_Repeat 767281 767328 60 + . . scaffold150 TRF Tandem_Repeat 767284 767328 81 + . . scaffold150 GLEAN promoter 772056 773055 0.999429 - . ID=CGI_10028625; scaffold150 WUBlastX LINE_RTE-BovB 776076 776336 85 + . . scaffold150 WUBlastX LINE_RTE-BovB 776315 776497 80 + . . scaffold150 WUBlastX LTR_Gypsy 796271 796354 20 + . . scaffold150 WUBlastX LTR_Gypsy 796849 797067 27 + . . scaffold150 WUBlastX LTR_Gypsy 796921 797148 56 + . . scaffold150 WUBlastX LTR_Gypsy 797151 797189 21 + . . scaffold150 WUBlastX LTR_Gypsy-Cigr 797157 797267 43 + . . scaffold150 WUBlastX LTR_Gypsy 797276 797779 22 + . . scaffold150 WUBlastX LTR_Gypsy 797363 797779 34 + . . scaffold150 WUBlastX LTR_Gypsy 797516 797668 34 + . . scaffold150 WUBlastX LTR_Gypsy 797543 797695 42 + . . scaffold150 WUBlastX LTR_Gypsy 797570 797779 47 + . . scaffold150 WUBlastX LTR_Gypsy-Cigr 797618 797779 56 + . . scaffold150 WUBlastX LTR_Gypsy 797674 798384 83 + . . scaffold150 WUBlastX LTR_Gypsy-Cigr 797782 798369 317 + . . scaffold150 WUBlastX LTR_Gypsy 798312 798761 265 + . . scaffold150 WUBlastX LTR_Gypsy 798345 798944 153 + . . scaffold150 WUBlastX LTR_Gypsy 798885 799028 25 + . . scaffold150 WUBlastX LTR_Gypsy 801575 802495 110 + . . scaffold150 WUBlastX LTR_Gypsy 801968 802639 141 + . . scaffold150 WUBlastX LTR_DIRS 803384 803749 114 + . . scaffold150 WUBlastX LTR_Ngaro 803492 803806 50 + . . scaffold150 WUBlastX LTR_DIRS 803889 804008 39 + . . scaffold150 TRF Tandem_Repeat 806091 806165 141 + . . scaffold150 WUBlastX DNA_Crypton 813677 813895 68 + . . scaffold150 WUBlastX DNA_Crypton 815029 815424 63 + . . scaffold150 TRF Tandem_Repeat 817483 817614 75 + . . scaffold150 WUBlastX LTR_Gypsy 824116 825039 109 + . . scaffold150 WUBlastX LTR_Gypsy 824509 825225 128 + . . scaffold150 WUBlastX LTR_DIRS 825340 825804 77 + . . scaffold150 WUBlastX LTR_DIRS 825779 825898 32 + . . scaffold150 GLEAN mRNA 827269 833302 0.999859 - . ID=CGI_10028626; scaffold150 GLEAN promoter 833303 834302 0.999859 - . ID=CGI_10028626; scaffold150 GLEAN mRNA 838853 848104 1 - . ID=CGI_10028627; scaffold150 TRF Tandem_Repeat 843272 843306 61 + . . scaffold150 GLEAN promoter 848105 849104 1 - . ID=CGI_10028627; scaffold150 TRF Tandem_Repeat 850951 850985 70 + . . scaffold150 GLEAN mRNA 852715 854820 0.999977 - . ID=CGI_10028628; scaffold150 GLEAN promoter 854821 855820 0.999977 - . ID=CGI_10028628; scaffold150 GLEAN promoter 855044 856043 0.470574 + . ID=CGI_10028629; scaffold150 GLEAN mRNA 856044 888703 0.470574 + . ID=CGI_10028629; scaffold150 TRF Tandem_Repeat 856688 856727 73 + . . scaffold150 GLEAN promoter 887983 888982 1 + . ID=CGI_10028630; scaffold150 GLEAN mRNA 888983 921874 1 + . ID=CGI_10028630; scaffold150 TRF Tandem_Repeat 907605 907644 53 + . . scaffold150 TRF Tandem_Repeat 907605 907641 65 + . . scaffold150 TRF Tandem_Repeat 911668 911712 63 + . . scaffold150 GLEAN mRNA 921497 922136 0.5 - . ID=CGI_10028631; scaffold150 GLEAN promoter 922137 923136 0.5 - . ID=CGI_10028631; scaffold150 TRF Tandem_Repeat 924041 924108 136 + . . scaffold150 TRF Tandem_Repeat 933713 933827 160 + . . scaffold150 TRF Tandem_Repeat 934009 934145 188 + . . scaffold150 TRF Tandem_Repeat 934270 934361 141 + . . scaffold150 TRF Tandem_Repeat 934420 934513 73 + . . scaffold150 TRF Tandem_Repeat 934740 934878 145 + . . scaffold150 GLEAN promoter 938604 939603 0.646794 + . ID=CGI_10028632; scaffold150 TRF Tandem_Repeat 938993 939032 80 + . . scaffold150 GLEAN mRNA 939604 940289 0.646794 + . ID=CGI_10028632; scaffold150 GLEAN promoter 953138 954137 1 + . ID=CGI_10028633; scaffold150 GLEAN mRNA 954138 954808 1 + . ID=CGI_10028633; scaffold150 TRF Tandem_Repeat 955600 955654 110 + . . scaffold150 GLEAN promoter 958043 959042 0.999661 + . ID=CGI_10028634; scaffold150 GLEAN mRNA 959043 959715 0.999661 + . ID=CGI_10028634; scaffold150 GLEAN mRNA 964413 964628 0.994718 - . ID=CGI_10028635; scaffold150 GLEAN promoter 964629 965628 0.994718 - . ID=CGI_10028635; scaffold150 GLEAN mRNA 964731 965498 1 - . ID=CGI_10028636; scaffold150 GLEAN promoter 965499 966498 1 - . ID=CGI_10028636; scaffold150 GLEAN mRNA 978098 978603 1 - . ID=CGI_10028637; scaffold150 GLEAN promoter 978604 979603 1 - . ID=CGI_10028637; scaffold150 TRF Tandem_Repeat 979852 979911 93 + . . scaffold150 TRF Tandem_Repeat 979853 979918 105 + . . scaffold150 TRF Tandem_Repeat 979942 981071 1781 + . . scaffold150 TRF Tandem_Repeat 985695 985738 54 + . . scaffold150 GLEAN promoter 993184 994183 1 + . ID=CGI_10028638; scaffold150 GLEAN mRNA 994184 994887 1 + . ID=CGI_10028638; scaffold150 TRF Tandem_Repeat 998018 998084 89 + . . scaffold150 TRF Tandem_Repeat 1000482 1000533 104 + . . scaffold150 TRF Tandem_Repeat 1001343 1001409 89 + . . scaffold150 GLEAN mRNA 1001935 1002123 0.73346 - . ID=CGI_10028639; scaffold150 GLEAN promoter 1002124 1003123 0.73346 - . ID=CGI_10028639; scaffold150 GLEAN promoter 1003252 1004251 0.86589 + . ID=CGI_10028640; scaffold150 GLEAN mRNA 1004252 1004988 0.86589 + . ID=CGI_10028640; scaffold150 GLEAN promoter 1009647 1010646 1 + . ID=CGI_10028641; scaffold150 GLEAN mRNA 1010647 1011347 1 + . ID=CGI_10028641; scaffold150 GLEAN mRNA 1011446 1011664 0.999372 - . ID=CGI_10028642; scaffold150 GLEAN promoter 1011665 1012664 0.999372 - . ID=CGI_10028642; scaffold150 GLEAN promoter 1013779 1014778 0.999372 + . ID=CGI_10028643; scaffold150 GLEAN mRNA 1014779 1014964 0.999372 + . ID=CGI_10028643; scaffold150 GLEAN promoter 1020869 1021868 0.999999 + . ID=CGI_10028644; scaffold150 GLEAN mRNA 1021869 1022632 0.999999 + . ID=CGI_10028644; scaffold150 GLEAN mRNA 1034053 1037657 0.797849 - . ID=CGI_10028645; scaffold150 GLEAN promoter 1037658 1038657 0.797849 - . ID=CGI_10028645; scaffold150 GLEAN mRNA 1037800 1042952 0.999815 - . ID=CGI_10028646; scaffold150 GLEAN promoter 1042178 1043177 1 + . ID=CGI_10028647; scaffold150 GLEAN promoter 1042953 1043952 0.999815 - . ID=CGI_10028646; scaffold150 GLEAN mRNA 1043178 1058541 1 + . ID=CGI_10028647; scaffold150 TRF Tandem_Repeat 1055934 1056251 609 + . . scaffold150 GLEAN mRNA 1062220 1075721 0.999866 - . ID=CGI_10028648; scaffold150 GLEAN promoter 1072530 1073529 0.889634 + . ID=CGI_10028649; scaffold150 GLEAN mRNA 1073530 1080768 0.889634 + . ID=CGI_10028649; scaffold150 GLEAN promoter 1075722 1076721 0.999866 - . ID=CGI_10028648; scaffold150 TRF Tandem_Repeat 1081616 1082107 443 + . . scaffold150 TRF Tandem_Repeat 1081633 1082110 381 + . . scaffold150 TRF Tandem_Repeat 1082462 1082542 162 + . . scaffold150 TRF Tandem_Repeat 1084941 1084981 73 + . . scaffold150 TRF Tandem_Repeat 1088134 1088172 78 + . . scaffold150 TRF Tandem_Repeat 1089013 1089050 76 + . . scaffold150 GLEAN mRNA 1092729 1094926 0.973412 - . ID=CGI_10028650; scaffold150 GLEAN promoter 1094927 1095926 0.973412 - . ID=CGI_10028650; scaffold150 TRF Tandem_Repeat 1094956 1094982 54 + . . scaffold150 GLEAN mRNA 1104217 1105428 0.714965 - . ID=CGI_10028651; scaffold150 GLEAN promoter 1105429 1106428 0.714965 - . ID=CGI_10028651; scaffold150 TRF Tandem_Repeat 1108153 1108236 67 + . . scaffold150 GLEAN mRNA 1114249 1117261 0.999928 - . ID=CGI_10028652; scaffold150 TRF Tandem_Repeat 1116238 1116572 233 + . . scaffold150 GLEAN promoter 1117262 1118261 0.999928 - . ID=CGI_10028652; scaffold150 TRF Tandem_Repeat 1123014 1124254 1748 + . . scaffold150 TRF Tandem_Repeat 1123014 1124239 2093 + . . scaffold150 GLEAN mRNA 1128219 1141761 0.651134 - . ID=CGI_10028653; scaffold150 GLEAN promoter 1141762 1142761 0.651134 - . ID=CGI_10028653; scaffold150 GLEAN promoter 1143309 1144308 0.811719 + . ID=CGI_10028654; scaffold150 GLEAN mRNA 1144309 1169557 0.811719 + . ID=CGI_10028654; scaffold150 TRF Tandem_Repeat 1146580 1147322 1014 + . . scaffold150 TRF Tandem_Repeat 1148388 1148466 74 + . . scaffold150 TRF Tandem_Repeat 1150871 1150908 67 + . . scaffold150 TRF Tandem_Repeat 1152061 1152259 346 + . . scaffold150 TRF Tandem_Repeat 1155212 1155610 690 + . . scaffold150 TRF Tandem_Repeat 1163059 1163105 60 + . . scaffold150 TRF Tandem_Repeat 1163278 1164824 2150 + . . scaffold150 TRF Tandem_Repeat 1169590 1170593 1316 + . . scaffold150 TRF Tandem_Repeat 1169590 1170593 1430 + . . scaffold150 GLEAN promoter 1169617 1170616 1 + . ID=CGI_10028655; scaffold150 TRF Tandem_Repeat 1170125 1170580 597 + . . scaffold150 GLEAN mRNA 1170617 1171395 1 + . ID=CGI_10028655; scaffold150 TRF Tandem_Repeat 1174061 1174098 76 + . . scaffold150 GLEAN mRNA 1174141 1178590 0.999583 - . ID=CGI_10028656; scaffold150 TRF Tandem_Repeat 1176090 1176146 69 + . . scaffold150 GLEAN promoter 1178591 1179590 0.999583 - . ID=CGI_10028656; scaffold150 GLEAN mRNA 1179879 1188334 0.733288 - . ID=CGI_10028657; scaffold150 TRF Tandem_Repeat 1181291 1181589 314 + . . scaffold150 TRF Tandem_Repeat 1186550 1186597 96 + . . scaffold150 TRF Tandem_Repeat 1186597 1186637 73 + . . scaffold150 TRF Tandem_Repeat 1186830 1186856 54 + . . scaffold150 GLEAN promoter 1188335 1189334 0.733288 - . ID=CGI_10028657; scaffold150 GLEAN promoter 1189357 1190356 0.986568 + . ID=CGI_10028658; scaffold150 GLEAN mRNA 1190357 1197465 0.986568 + . ID=CGI_10028658; scaffold150 TRF Tandem_Repeat 1196878 1197065 159 + . . scaffold150 GLEAN mRNA 1197692 1201646 0.999997 - . ID=CGI_10028659; scaffold150 TRF Tandem_Repeat 1199242 1200222 1017 + . . scaffold150 TRF Tandem_Repeat 1199242 1200296 959 + . . scaffold150 TRF Tandem_Repeat 1199242 1200296 778 + . . scaffold150 GLEAN promoter 1200807 1201806 0.999661 + . ID=CGI_10028660; scaffold150 GLEAN promoter 1201647 1202646 0.999997 - . ID=CGI_10028659; scaffold150 GLEAN mRNA 1201807 1202889 0.999661 + . ID=CGI_10028660; scaffold150 GLEAN mRNA 1205286 1224549 1 - . ID=CGI_10028661; scaffold150 GLEAN promoter 1212916 1213915 0.630659 + . ID=CGI_10028662; scaffold150 GLEAN mRNA 1213916 1217122 0.630659 + . ID=CGI_10028662; scaffold150 TRF Tandem_Repeat 1214103 1214527 207 + . . scaffold150 TRF Tandem_Repeat 1214192 1214564 453 + . . scaffold150 TRF Tandem_Repeat 1214192 1214564 568 + . . scaffold150 WUBlastX DNA_Kolobok-Hyd 1214982 1215266 30 + . . scaffold150 WUBlastX DNA_Kolobok-Hyd 1215030 1215419 30 + . . scaffold150 WUBlastX DNA_Kolobok-Hyd 1215922 1215996 42 + . . scaffold150 WUBlastX DNA_Kolobok-Hyd 1216149 1216373 25 + . . scaffold150 TRF Tandem_Repeat 1222443 1223386 1006 + . . scaffold150 TRF Tandem_Repeat 1222485 1223386 1257 + . . scaffold150 GLEAN promoter 1224550 1225549 1 - . ID=CGI_10028661; scaffold150 TRF Tandem_Repeat 1225614 1225648 70 + . . scaffold150 TRF Tandem_Repeat 1226621 1227005 182 + . . scaffold150 TRF Tandem_Repeat 1226676 1227007 168 + . . scaffold150 TRF Tandem_Repeat 1226684 1227010 191 + . . scaffold150 GLEAN promoter 1227853 1228852 0.999372 + . ID=CGI_10028664; scaffold150 TRF Tandem_Repeat 1228017 1228051 70 + . . scaffold150 GLEAN mRNA 1228795 1233791 0.911813 - . ID=CGI_10028663; scaffold150 GLEAN mRNA 1228853 1229161 0.999372 + . ID=CGI_10028664; scaffold150 TRF Tandem_Repeat 1230426 1230473 55 + . . scaffold150 GLEAN promoter 1233792 1234791 0.911813 - . ID=CGI_10028663; scaffold150 GLEAN mRNA 1237587 1238831 0.999984 - . ID=CGI_10028665; scaffold150 GLEAN promoter 1238832 1239831 0.999984 - . ID=CGI_10028665; scaffold150 GLEAN promoter 1243325 1244324 1 + . ID=CGI_10028666; scaffold150 GLEAN mRNA 1244325 1245978 1 + . ID=CGI_10028666; scaffold150 GLEAN promoter 1250643 1251642 0.931604 + . ID=CGI_10028667; scaffold150 GLEAN mRNA 1251643 1253706 0.931604 + . ID=CGI_10028667; scaffold150 GLEAN promoter 1256066 1257065 0.991953 + . ID=CGI_10028668; scaffold150 GLEAN mRNA 1257066 1258510 0.991953 + . ID=CGI_10028668; scaffold150 TRF Tandem_Repeat 1260064 1261005 1296 + . . scaffold150 TRF Tandem_Repeat 1260064 1261005 1235 + . . scaffold150 TRF Tandem_Repeat 1270145 1270387 311 + . . scaffold150 WUBlastX DNA_Sola 1270596 1271507 74 - . . scaffold150 WUBlastX DNA_Sola 1270596 1271000 110 - . . scaffold150 WUBlastX DNA_Sola 1270602 1271207 79 - . . scaffold150 TRF Tandem_Repeat 1273257 1273392 137 + . . scaffold150 GLEAN promoter 1274607 1275606 1 + . ID=CGI_10028669; scaffold150 TRF Tandem_Repeat 1274685 1274725 55 + . . scaffold150 TRF Tandem_Repeat 1274689 1274740 58 + . . scaffold150 GLEAN mRNA 1275607 1280044 1 + . ID=CGI_10028669; scaffold150 GLEAN mRNA 1281711 1287697 1 - . ID=CGI_10028670; scaffold150 GLEAN promoter 1287698 1288697 1 - . ID=CGI_10028670; scaffold150 GLEAN promoter 1287737 1288736 0.926091 + . ID=CGI_10028671; scaffold150 GLEAN mRNA 1288737 1293066 0.926091 + . ID=CGI_10028671; scaffold150 TRF Tandem_Repeat 1296613 1296658 74 + . . scaffold150 GLEAN mRNA 1298999 1309680 0.814164 - . ID=CGI_10028672; scaffold150 TRF Tandem_Repeat 1304168 1304595 423 + . . scaffold150 TRF Tandem_Repeat 1304170 1304595 342 + . . scaffold150 TRF Tandem_Repeat 1305568 1306391 1199 + . . scaffold150 TRF Tandem_Repeat 1307475 1307545 142 + . . scaffold150 GLEAN promoter 1309681 1310680 0.814164 - . ID=CGI_10028672; scaffold150 GLEAN mRNA 1314584 1316622 0.521369 - . ID=CGI_10028673; scaffold150 GLEAN promoter 1316623 1317622 0.521369 - . ID=CGI_10028673; scaffold150 GLEAN mRNA 1316689 1329919 1 - . ID=CGI_10028674; scaffold150 TRF Tandem_Repeat 1320726 1320763 67 + . . scaffold150 TRF Tandem_Repeat 1320893 1321008 187 + . . scaffold150 TRF Tandem_Repeat 1323592 1323644 97 + . . scaffold150 TRF Tandem_Repeat 1329182 1329218 74 + . . scaffold150 GLEAN promoter 1329920 1330919 1 - . ID=CGI_10028674; scaffold150 TRF Tandem_Repeat 1337217 1337272 112 + . . scaffold150 TRF Tandem_Repeat 1337670 1337734 130 + . . scaffold150 GLEAN promoter 1339936 1340935 1 + . ID=CGI_10028675; scaffold150 GLEAN mRNA 1340936 1351181 1 + . ID=CGI_10028675; scaffold150 TRF Tandem_Repeat 1348701 1349542 1066 + . . scaffold150 GLEAN mRNA 1351630 1358824 0.998084 - . ID=CGI_10028676; scaffold150 WUBlastX LTR_DIRS 1352745 1353680 458 - . . scaffold150 WUBlastX LTR_DIRS 1353824 1354636 369 - . . scaffold150 WUBlastX LTR_DIRS 1354612 1355247 275 - . . scaffold150 WUBlastX LTR_DIRS 1354630 1355463 129 - . . scaffold150 GLEAN promoter 1358825 1359824 0.998084 - . ID=CGI_10028676; scaffold150 GLEAN promoter 1361587 1362586 0.499144 + . ID=CGI_10028677; scaffold150 GLEAN mRNA 1362587 1380772 0.499144 + . ID=CGI_10028677; scaffold150 TRF Tandem_Repeat 1365310 1365453 126 + . . scaffold150 TRF Tandem_Repeat 1366517 1366576 93 + . . scaffold150 TRF Tandem_Repeat 1368098 1368160 58 + . . scaffold150 TRF Tandem_Repeat 1371921 1371976 112 + . . scaffold150 GLEAN mRNA 1372759 1377820 1 - . ID=CGI_10028678; scaffold150 GLEAN promoter 1377821 1378820 1 - . ID=CGI_10028678; scaffold150 TRF Tandem_Repeat 1377910 1378197 366 + . . scaffold150 TRF Tandem_Repeat 1377910 1378197 324 + . . scaffold150 GLEAN mRNA 1391324 1408192 0.394228 - . ID=CGI_10028679; scaffold150 TRF Tandem_Repeat 1396588 1396710 129 + . . scaffold150 GLEAN promoter 1401605 1402604 1 + . ID=CGI_10028680; scaffold150 TRF Tandem_Repeat 1401868 1401961 134 + . . scaffold150 GLEAN mRNA 1402605 1408500 1 + . ID=CGI_10028680; scaffold150 TRF Tandem_Repeat 1405476 1405519 88 + . . scaffold150 TRF Tandem_Repeat 1406108 1406144 65 + . . scaffold150 GLEAN promoter 1408193 1409192 0.394228 - . ID=CGI_10028679; scaffold150 GLEAN mRNA 1409969 1411665 1 - . ID=CGI_10028681; scaffold150 GLEAN promoter 1411666 1412665 1 - . ID=CGI_10028681; scaffold150 WUBlastX LINE_RTE-X 1413540 1413824 49 - . . scaffold150 GLEAN promoter 1413621 1414620 0.999642 + . ID=CGI_10028682; scaffold150 GLEAN mRNA 1414621 1415169 0.999642 + . ID=CGI_10028682; scaffold150 WUBlastX LINE_RTE-X 1416691 1417230 199 - . . scaffold150 WUBlastX LINE_RTE-X 1417200 1417478 170 - . . scaffold150 WUBlastX LINE_RTE-X 1417483 1417953 218 - . . scaffold150 WUBlastX LINE_RTE-X 1417486 1418061 96 - . . scaffold150 WUBlastX LINE_L1-Tx1 1421178 1422281 161 - . . scaffold150 WUBlastX LINE_L1-Tx1 1422251 1422460 53 - . . scaffold150 TRF Tandem_Repeat 1424589 1424615 54 + . . scaffold150 TRF Tandem_Repeat 1426307 1426406 123 + . . scaffold150 GLEAN promoter 1430441 1431440 0.729145 + . ID=CGI_10028683; scaffold150 GLEAN mRNA 1431441 1444585 0.729145 + . ID=CGI_10028683; scaffold150 TRF Tandem_Repeat 1439277 1439319 59 + . . scaffold150 TRF Tandem_Repeat 1439489 1440366 1307 + . . scaffold150 TRF Tandem_Repeat 1441553 1441985 577 + . . scaffold150 GLEAN mRNA 1450542 1456299 1 - . ID=CGI_10028684; scaffold150 TRF Tandem_Repeat 1450742 1450838 103 + . . scaffold150 TRF Tandem_Repeat 1450766 1450841 79 + . . scaffold150 GLEAN promoter 1456300 1457299 1 - . ID=CGI_10028684; scaffold150 GLEAN mRNA 1457253 1458275 1 - . ID=CGI_10028685; scaffold150 GLEAN promoter 1458276 1459275 1 - . ID=CGI_10028685; scaffold150 GLEAN mRNA 1463951 1476104 1 - . ID=CGI_10028686; scaffold150 GLEAN promoter 1476105 1477104 1 - . ID=CGI_10028686; scaffold150 TRF Tandem_Repeat 1478964 1479054 121 + . . scaffold150 TRF Tandem_Repeat 1489389 1489413 50 + . . scaffold150 TRF Tandem_Repeat 1492221 1492255 70 + . . scaffold150 TRF Tandem_Repeat 1499484 1499586 165 + . . scaffold150 TRF Tandem_Repeat 1500204 1500299 115 + . . scaffold150 TRF Tandem_Repeat 1500384 1502734 2007 + . . scaffold150 TRF Tandem_Repeat 1504818 1506167 740 + . . scaffold150 TRF Tandem_Repeat 1516361 1516414 108 + . . scaffold150 TRF Tandem_Repeat 1516514 1516570 105 + . . scaffold150 TRF Tandem_Repeat 1517445 1517483 60 + . . scaffold150 TRF Tandem_Repeat 1520894 1521753 1051 + . . scaffold150 GLEAN mRNA 1533380 1537595 1 - . ID=CGI_10028688; scaffold150 GLEAN promoter 1537596 1538595 1 - . ID=CGI_10028688; scaffold150 TRF Tandem_Repeat 1545544 1545577 68 + . . scaffold150 TRF Tandem_Repeat 1545577 1545636 120 + . . scaffold150 GLEAN promoter 1546065 1547064 0.612131 + . ID=CGI_10028689; scaffold150 GLEAN mRNA 1547065 1576864 0.612131 + . ID=CGI_10028689; scaffold150 GLEAN promoter 1576225 1577224 0.685515 + . ID=CGI_10028690; scaffold150 GLEAN mRNA 1577225 1599619 0.685515 + . ID=CGI_10028690; scaffold150 WUBlastX DNA_Kolobok 1580669 1581040 111 + . . scaffold150 WUBlastX DNA_Kolobok 1580672 1580986 121 + . . scaffold150 WUBlastX DNA_Kolobok 1581197 1581439 118 + . . scaffold150 WUBlastX DNA_Kolobok 1581581 1581649 25 + . . scaffold150 WUBlastX DNA_Kolobok 1581593 1581652 34 + . . scaffold150 TRF Tandem_Repeat 1581973 1582093 224 + . . scaffold150 TRF Tandem_Repeat 1582194 1582263 140 + . . scaffold150 TRF Tandem_Repeat 1585576 1585634 118 + . . scaffold150 TRF Tandem_Repeat 1587563 1587798 357 + . . scaffold150 TRF Tandem_Repeat 1587885 1588194 230 + . . scaffold150 TRF Tandem_Repeat 1589604 1589657 99 + . . scaffold150 TRF Tandem_Repeat 1589734 1589771 67 + . . scaffold150 TRF Tandem_Repeat 1589769 1589803 70 + . . scaffold150 TRF Tandem_Repeat 1589842 1589922 71 + . . scaffold150 TRF Tandem_Repeat 1590576 1592947 3358 + . . scaffold150 TRF Tandem_Repeat 1594630 1594736 171 + . . scaffold150 TRF Tandem_Repeat 1595444 1595526 109 + . . scaffold150 TRF Tandem_Repeat 1595945 1595992 60 + . . scaffold150 WUBlastX LTR_Gypsy 1597790 1598275 26 + . . scaffold150 TRF Tandem_Repeat 1600214 1600247 68 + . . scaffold150 WUBlastX LINE_Penelope 1602573 1602917 47 - . . scaffold150 WUBlastX LINE_Penelope 1603043 1603192 39 - . . scaffold150 WUBlastX LINE_Penelope 1603076 1603201 70 - . . scaffold150 WUBlastX LINE_Penelope 1603082 1603273 31 - . . scaffold150 TRF Tandem_Repeat 1605714 1605763 66 + . . scaffold150 TRF Tandem_Repeat 1606143 1606180 76 + . . scaffold150 TRF Tandem_Repeat 1607529 1607593 112 + . . scaffold150 GLEAN promoter 1608311 1609310 0.550073 + . ID=CGI_10028691; scaffold150 GLEAN mRNA 1609311 1613969 0.550073 + . ID=CGI_10028691; scaffold150 WUBlastX LINE_L2 1610519 1610620 32 + . . scaffold150 WUBlastX LINE_CR1-L2 1610570 1610653 64 + . . scaffold150 WUBlastX LINE_CR1-L2 1610589 1610957 87 + . . scaffold150 WUBlastX LINE_CR1-L2 1610649 1611221 110 + . . scaffold150 WUBlastX LINE_CR1-L2 1610649 1611575 48 + . . scaffold150 TRF Tandem_Repeat 1624688 1624788 51 + . . scaffold150 GLEAN mRNA 1626512 1630643 1 - . ID=CGI_10028692; scaffold150 GLEAN promoter 1629860 1630859 1 + . ID=CGI_10028693; scaffold150 GLEAN promoter 1630644 1631643 1 - . ID=CGI_10028692; scaffold150 GLEAN mRNA 1630860 1633433 1 + . ID=CGI_10028693; scaffold150 GLEAN mRNA 1634405 1647516 1 - . ID=CGI_10028694; scaffold150 GLEAN promoter 1647517 1648516 1 - . ID=CGI_10028694; scaffold150 TRF Tandem_Repeat 1651869 1651933 130 + . . scaffold150 TRF Tandem_Repeat 1658184 1658231 96 + . . scaffold150 GLEAN promoter 1670308 1671307 0.932614 + . ID=CGI_10028695; scaffold150 GLEAN mRNA 1671308 1685433 0.932614 + . ID=CGI_10028695; scaffold150 WUBlastX LINE_RTE-X 1689635 1690276 36 - . . scaffold150 WUBlastX LINE_RTE-X 1689641 1690174 71 - . . scaffold150 WUBlastX LINE_RTE-X 1689653 1689949 71 - . . scaffold150 WUBlastX LINE_RTE-X 1690597 1690755 66 - . . scaffold150 WUBlastX LINE_RTE-X 1690603 1690821 53 - . . scaffold150 WUBlastX LINE_RTE-X 1690603 1690869 45 - . . scaffold150 TRF Tandem_Repeat 1695281 1695328 96 + . . scaffold150 GLEAN mRNA 1699012 1703311 0.99996 - . ID=CGI_10028696; scaffold150 GLEAN promoter 1703021 1704020 0.836238 + . ID=CGI_10028697; scaffold150 GLEAN promoter 1703312 1704311 0.99996 - . ID=CGI_10028696; scaffold150 GLEAN mRNA 1704021 1706532 0.836238 + . ID=CGI_10028697; scaffold150 GLEAN mRNA 1729070 1740167 1 - . ID=CGI_10028698; scaffold150 GLEAN promoter 1739600 1740599 1 + . ID=CGI_10028699; scaffold150 GLEAN promoter 1740168 1741167 1 - . ID=CGI_10028698; scaffold150 GLEAN mRNA 1740600 1744657 1 + . ID=CGI_10028699; scaffold150 GLEAN mRNA 1744719 1749363 1 - . ID=CGI_10028700; scaffold150 GLEAN promoter 1749364 1750363 1 - . ID=CGI_10028700; scaffold150 GLEAN mRNA 1751272 1756095 1 - . ID=CGI_10028701; scaffold150 GLEAN promoter 1751956 1752955 0.80741 + . ID=CGI_10028702; scaffold150 GLEAN mRNA 1752956 1765015 0.80741 + . ID=CGI_10028702; scaffold150 GLEAN promoter 1756096 1757095 1 - . ID=CGI_10028701; scaffold150 WUBlastX DNA_IS4EU 1760005 1760328 84 - . . scaffold150 TRF Tandem_Repeat 1776282 1776311 51 + . . scaffold150 TRF Tandem_Repeat 1780967 1781104 70 + . . scaffold150 TRF Tandem_Repeat 1781767 1781798 64 + . . scaffold150 GLEAN mRNA 1789295 1803648 0.999141 - . ID=CGI_10028703; scaffold150 TRF Tandem_Repeat 1792868 1792910 86 + . . scaffold150 GLEAN promoter 1803649 1804648 0.999141 - . ID=CGI_10028703; scaffold150 TRF Tandem_Repeat 1818847 1818876 51 + . . scaffold150 TRF Tandem_Repeat 1818920 1818944 50 + . . scaffold150 TRF Tandem_Repeat 1819158 1819198 82 + . . scaffold150 GLEAN mRNA 1821287 1826147 0.999676 - . ID=CGI_10028704; scaffold150 TRF Tandem_Repeat 1822441 1822494 99 + . . scaffold150 TRF Tandem_Repeat 1823184 1823226 86 + . . scaffold150 GLEAN promoter 1825394 1826393 0.999947 + . ID=CGI_10028705; scaffold150 GLEAN promoter 1826148 1827147 0.999676 - . ID=CGI_10028704; scaffold150 GLEAN mRNA 1826394 1828298 0.999947 + . ID=CGI_10028705; scaffold150 GLEAN mRNA 1829428 1830760 0.999999 - . ID=CGI_10028706; scaffold150 GLEAN promoter 1830761 1831760 0.999999 - . ID=CGI_10028706; scaffold150 GLEAN mRNA 1831339 1834965 0.999999 - . ID=CGI_10028707; scaffold150 TRF Tandem_Repeat 1831789 1831843 56 + . . scaffold150 GLEAN promoter 1834966 1835965 0.999999 - . ID=CGI_10028707; scaffold150 GLEAN promoter 1843855 1844854 0.997342 + . ID=CGI_10028708; scaffold150 GLEAN mRNA 1844855 1845298 0.997342 + . ID=CGI_10028708; scaffold150 TRF Tandem_Repeat 1845325 1845364 80 + . . scaffold150 TRF Tandem_Repeat 1853128 1853164 74 + . . scaffold150 TRF Tandem_Repeat 1853235 1853277 86 + . . scaffold1500 GLEAN promoter 1 15 0.999068 + . ID=CGI_10007895; scaffold1500 GLEAN mRNA 16 285 0.999068 + . ID=CGI_10007895; scaffold1500 WUBlastX LINE_L2 21990 22700 50 - . . scaffold1500 WUBlastX LINE_CR1-L2 22218 22670 58 - . . scaffold1500 WUBlastX LINE_CR1-L2 22230 22613 112 - . . scaffold1500 TRF Tandem_Repeat 28239 28288 100 + . . scaffold1500 TRF Tandem_Repeat 34097 34153 114 + . . scaffold1500 TRF Tandem_Repeat 36405 36478 148 + . . scaffold1500 WUBlastX DNA_Crypton 47670 47951 88 - . . scaffold1500 WUBlastX DNA_Crypton 48596 48916 75 - . . scaffold1500 GLEAN promoter 48749 49748 0.435566 + . ID=CGI_10007896; scaffold1500 GLEAN mRNA 49749 53516 0.435566 + . ID=CGI_10007896; scaffold1500 WUBlastX LINE_Penelope 56521 56694 25 + . . scaffold1500 WUBlastX LINE_Penelope 56769 57203 21 + . . scaffold1500 WUBlastX LTR_Gypsy 67172 68068 676 + . . scaffold1500 WUBlastX LTR_Gypsy 68945 69037 20 + . . scaffold1500 WUBlastX DNA_Academ 72827 73021 74 - . . scaffold1500 WUBlastX DNA_TcMar-Tc1 83685 84008 169 - . . scaffold1500 WUBlastX DNA_TcMar-Tc1 83697 84626 115 - . . scaffold1500 WUBlastX DNA_TcMar-Tc1 84110 84400 116 - . . scaffold1500 WUBlastX DNA_TcMar-Tc1 84393 84722 26 - . . scaffold1500 WUBlastX DNA_hAT-Tip100 87185 87454 88 - . . scaffold1500 WUBlastX DNA_hAT-Tip100 87188 87730 69 - . . scaffold1500 WUBlastX DNA_hAT-Tip100 87245 88048 46 - . . scaffold1500 TRF Tandem_Repeat 89278 89347 131 + . . scaffold1500 TRF Tandem_Repeat 113919 113970 104 + . . scaffold1500 TRF Tandem_Repeat 115539 116823 1210 + . . scaffold1500 GLEAN promoter 117785 118784 0.987163 + . ID=CGI_10007897; scaffold1500 GLEAN mRNA 118785 139886 0.987163 + . ID=CGI_10007897; scaffold1500 TRF Tandem_Repeat 120102 120159 107 + . . scaffold1500 TRF Tandem_Repeat 131253 131303 72 + . . scaffold1500 GLEAN mRNA 138474 139937 0.994695 - . ID=CGI_10007898; scaffold1500 GLEAN promoter 139938 140937 0.994695 - . ID=CGI_10007898; scaffold1500 WUBlastX DNA_Harbinger 142217 142288 22 + . . scaffold1500 WUBlastX DNA_Harbinger 142744 143298 91 + . . scaffold1500 WUBlastX DNA_Harbinger 142972 143298 175 + . . scaffold1500 GLEAN mRNA 143334 143531 0.481107 - . ID=CGI_10007899; scaffold1500 WUBlastX DNA_Harbinger 143532 143660 29 + . . scaffold1500 GLEAN promoter 143532 144531 0.481107 - . ID=CGI_10007899; scaffold1500 WUBlastX DNA_Harbinger 143580 143660 45 + . . scaffold1500 WUBlastX DNA_Harbinger 143601 143672 39 + . . scaffold1500 WUBlastX DNA_Harbinger 143601 143693 35 + . . scaffold1500 WUBlastX DNA_Harbinger 144525 144671 21 + . . scaffold1500 TRF Tandem_Repeat 151157 151278 83 + . . scaffold1500 TRF Tandem_Repeat 151157 151284 81 + . . scaffold1500 TRF Tandem_Repeat 151164 151277 74 + . . scaffold1500 TRF Tandem_Repeat 157977 158013 58 + . . scaffold1500 GLEAN mRNA 171651 188068 0.692586 - . ID=CGI_10007900; scaffold1500 TRF Tandem_Repeat 177829 177864 72 + . . scaffold1500 WUBlastX LTR_Gypsy 185276 185683 147 - . . scaffold1500 WUBlastX LTR_Gypsy 185375 185680 156 - . . scaffold1500 WUBlastX LTR_Gypsy 185661 186290 506 - . . scaffold1500 WUBlastX LTR_Gypsy 185685 186218 509 - . . scaffold1500 TRF Tandem_Repeat 187786 187825 80 + . . scaffold1500 GLEAN promoter 188069 189068 0.692586 - . ID=CGI_10007900; scaffold1500 TRF Tandem_Repeat 188525 188618 91 + . . scaffold1500 TRF Tandem_Repeat 188693 188784 150 + . . scaffold1500 GLEAN promoter 188813 189812 1 + . ID=CGI_10007901; scaffold1500 TRF Tandem_Repeat 188861 189002 133 + . . scaffold1500 TRF Tandem_Repeat 189185 189278 136 + . . scaffold1500 GLEAN mRNA 189813 190652 1 + . ID=CGI_10007901; scaffold1500 GLEAN mRNA 191252 191479 0.714341 - . ID=CGI_10007902; scaffold1500 GLEAN promoter 191480 192479 0.714341 - . ID=CGI_10007902; scaffold1500 TRF Tandem_Repeat 193024 193048 50 + . . scaffold1500 TRF Tandem_Repeat 193048 193105 116 + . . scaffold1501 TRF Tandem_Repeat 3585 3637 106 + . . scaffold1501 WUBlastX DNA_hAT-Tip100 4958 6253 840 - . . scaffold1501 WUBlastX DNA_hAT-Tip100 6274 6750 316 - . . scaffold1501 WUBlastX DNA_hAT-Tip100 6280 6921 134 - . . scaffold1501 WUBlastX DNA_hAT-Tip100 6635 7033 101 - . . scaffold1501 WUBlastX DNA_hAT-Tip100 6686 7378 81 - . . scaffold1501 WUBlastX DNA_hAT-Tip100 6776 7174 99 - . . scaffold1501 GLEAN promoter 9874 10873 0.917003 + . ID=CGI_10004161; scaffold1501 GLEAN mRNA 10874 11390 0.917003 + . ID=CGI_10004161; scaffold1501 WUBlastX DNA_Kolobok 12902 13975 98 + . . scaffold1501 GLEAN promoter 18145 19144 0.906757 + . ID=CGI_10004162; scaffold1501 GLEAN mRNA 19145 33271 0.906757 + . ID=CGI_10004162; scaffold1501 TRF Tandem_Repeat 24865 24892 56 + . . scaffold1501 TRF Tandem_Repeat 27311 27374 128 + . . scaffold1501 GLEAN mRNA 37525 43880 0.999735 - . ID=CGI_10004163; scaffold1501 GLEAN promoter 43881 44880 0.999735 - . ID=CGI_10004163; scaffold1501 GLEAN promoter 43983 44982 0.998077 + . ID=CGI_10004164; scaffold1501 GLEAN mRNA 44983 45699 0.998077 + . ID=CGI_10004164; scaffold1501 GLEAN promoter 48338 49337 0.998745 + . ID=CGI_10004165; scaffold1501 GLEAN mRNA 49338 50051 0.998745 + . ID=CGI_10004165; scaffold1501 GLEAN promoter 50036 51035 0.777001 + . ID=CGI_10004166; scaffold1501 GLEAN mRNA 51036 51416 0.777001 + . ID=CGI_10004166; scaffold1501 WUBlastX LTR_Gypsy 55055 55579 89 + . . scaffold1501 WUBlastX LTR_Gypsy 55223 55573 147 + . . scaffold1501 WUBlastX LTR_Gypsy-Cigr 55283 55579 188 + . . scaffold1501 GLEAN mRNA 55710 74261 0.988822 - . ID=CGI_10004167; scaffold1501 TRF Tandem_Repeat 57112 57303 196 + . . scaffold1501 GLEAN promoter 73155 74154 0.801598 + . ID=CGI_10004168; scaffold1501 GLEAN mRNA 74155 92514 0.801598 + . ID=CGI_10004168; scaffold1501 GLEAN promoter 74262 75261 0.988822 - . ID=CGI_10004167; scaffold1501 TRF Tandem_Repeat 76086 76240 204 + . . scaffold1501 TRF Tandem_Repeat 79083 79836 693 + . . scaffold1501 TRF Tandem_Repeat 91282 91339 116 + . . scaffold1502 GLEAN mRNA 2514 17245 0.692839 - . ID=CGI_10001572; scaffold1502 GLEAN promoter 17214 18213 1 + . ID=CGI_10001573; scaffold1502 GLEAN promoter 17246 18245 0.692839 - . ID=CGI_10001572; scaffold1502 GLEAN mRNA 18214 25048 1 + . ID=CGI_10001573; scaffold1503 GLEAN mRNA 126 5946 0.858576 - . ID=CGI_10009522; scaffold1503 TRF Tandem_Repeat 506 557 104 + . . scaffold1503 TRF Tandem_Repeat 1839 2123 552 + . . scaffold1503 GLEAN promoter 5947 6946 0.858576 - . ID=CGI_10009522; scaffold1503 GLEAN promoter 6092 7091 0.731429 + . ID=CGI_10009523; scaffold1503 GLEAN mRNA 7092 8365 0.731429 + . ID=CGI_10009523; scaffold1503 GLEAN mRNA 11603 29007 1 - . ID=CGI_10009524; scaffold1503 TRF Tandem_Repeat 16278 17435 1798 + . . scaffold1503 TRF Tandem_Repeat 16278 17435 1753 + . . scaffold1503 TRF Tandem_Repeat 16281 17439 1828 + . . scaffold1503 TRF Tandem_Repeat 21921 21957 74 + . . scaffold1503 GLEAN promoter 29008 30007 1 - . ID=CGI_10009524; scaffold1503 GLEAN promoter 38138 39137 0.681639 + . ID=CGI_10009525; scaffold1503 GLEAN mRNA 39138 44019 0.681639 + . ID=CGI_10009525; scaffold1503 TRF Tandem_Repeat 41926 42115 301 + . . scaffold1503 TRF Tandem_Repeat 42436 42518 78 + . . scaffold1503 GLEAN promoter 49101 50100 0.998612 + . ID=CGI_10009527; scaffold1503 GLEAN mRNA 49416 51934 0.937847 - . ID=CGI_10009526; scaffold1503 GLEAN mRNA 50101 54154 0.998612 + . ID=CGI_10009527; scaffold1503 GLEAN promoter 51935 52934 0.937847 - . ID=CGI_10009526; scaffold1503 GLEAN promoter 54967 55966 1 + . ID=CGI_10009528; scaffold1503 GLEAN mRNA 55967 67698 1 + . ID=CGI_10009528; scaffold1503 WUBlastX DNA_TcMar-Tc1 56379 56981 303 - . . scaffold1503 WUBlastX DNA_TcMar-Tc1 57003 57263 164 - . . scaffold1503 WUBlastX DNA_TcMar-Tc1 57006 57347 148 - . . scaffold1503 WUBlastX DNA_TcMar-Tc1 57620 57901 26 - . . scaffold1503 TRF Tandem_Repeat 64362 66286 1356 + . . scaffold1503 TRF Tandem_Repeat 67183 67438 187 + . . scaffold1503 TRF Tandem_Repeat 67183 67509 276 + . . scaffold1503 TRF Tandem_Repeat 67183 67500 176 + . . scaffold1503 GLEAN mRNA 68406 71360 1 - . ID=CGI_10009529; scaffold1503 GLEAN promoter 71361 72360 1 - . ID=CGI_10009529; scaffold1503 TRF Tandem_Repeat 72300 72343 79 + . . scaffold1503 GLEAN mRNA 75378 97107 0.999557 - . ID=CGI_10009530; scaffold1503 TRF Tandem_Repeat 80765 80790 52 + . . scaffold1503 TRF Tandem_Repeat 86801 86831 62 + . . scaffold1503 GLEAN promoter 94543 95542 1 + . ID=CGI_10009531; scaffold1503 GLEAN mRNA 95543 100855 1 + . ID=CGI_10009531; scaffold1503 GLEAN promoter 97108 98107 0.999557 - . ID=CGI_10009530; scaffold1503 TRF Tandem_Repeat 99829 99883 103 + . . scaffold1503 GLEAN mRNA 103188 104183 0.768341 - . ID=CGI_10009532; scaffold1503 GLEAN promoter 104184 105183 0.768341 - . ID=CGI_10009532; scaffold1503 GLEAN mRNA 107578 109368 0.999956 - . ID=CGI_10009533; scaffold1503 GLEAN promoter 109369 110368 0.999956 - . ID=CGI_10009533; scaffold1503 GLEAN promoter 113699 114698 0.882949 + . ID=CGI_10009534; scaffold1503 GLEAN mRNA 114699 156404 0.882949 + . ID=CGI_10009534; scaffold1503 TRF Tandem_Repeat 119545 119968 322 + . . scaffold1503 TRF Tandem_Repeat 121629 122475 1271 + . . scaffold1503 GLEAN mRNA 130487 130801 0.618214 - . ID=CGI_10009535; scaffold1503 GLEAN promoter 130802 131801 0.618214 - . ID=CGI_10009535; scaffold1503 TRF Tandem_Repeat 133691 133766 109 + . . scaffold1503 GLEAN mRNA 135362 137499 0.925801 - . ID=CGI_10009536; scaffold1503 GLEAN promoter 137500 138499 0.925801 - . ID=CGI_10009536; scaffold1503 TRF Tandem_Repeat 138576 138605 60 + . . scaffold1503 TRF Tandem_Repeat 139997 140200 160 + . . scaffold1503 TRF Tandem_Repeat 147224 147264 73 + . . scaffold1503 TRF Tandem_Repeat 149677 149711 70 + . . scaffold1503 TRF Tandem_Repeat 161171 162726 2408 + . . scaffold1503 TRF Tandem_Repeat 161171 162726 2453 + . . scaffold1503 GLEAN promoter 163584 164583 1 + . ID=CGI_10009537; scaffold1503 GLEAN mRNA 164584 165986 1 + . ID=CGI_10009537; scaffold1503 TRF Tandem_Repeat 167849 168037 335 + . . scaffold1503 GLEAN mRNA 187320 192498 0.925812 - . ID=CGI_10009538; scaffold1503 GLEAN promoter 192499 193498 0.925812 - . ID=CGI_10009538; scaffold1503 GLEAN promoter 193105 194104 1 + . ID=CGI_10009539; scaffold1503 GLEAN mRNA 194105 211206 1 + . ID=CGI_10009539; scaffold1503 TRF Tandem_Repeat 195669 196278 253 + . . scaffold1503 TRF Tandem_Repeat 195764 196271 131 + . . scaffold1503 TRF Tandem_Repeat 195816 196151 536 + . . scaffold1503 TRF Tandem_Repeat 195817 196151 521 + . . scaffold1503 TRF Tandem_Repeat 195932 196278 341 + . . scaffold1503 TRF Tandem_Repeat 196106 196251 97 + . . scaffold1503 TRF Tandem_Repeat 196744 196783 64 + . . scaffold1503 TRF Tandem_Repeat 199806 199919 210 + . . scaffold1503 TRF Tandem_Repeat 200911 200960 64 + . . scaffold1503 TRF Tandem_Repeat 200925 200960 63 + . . scaffold1503 TRF Tandem_Repeat 206447 207236 1049 + . . scaffold1503 WUBlastX LINE_Penelope 214629 215093 165 + . . scaffold1503 TRF Tandem_Repeat 217631 217995 540 + . . scaffold1503 TRF Tandem_Repeat 219139 219274 184 + . . scaffold1503 GLEAN mRNA 219416 230128 0.776193 - . ID=CGI_10009541; scaffold1503 TRF Tandem_Repeat 222543 223280 337 + . . scaffold1503 WUBlastX LINE_RTE-BovB 227255 227455 123 + . . scaffold1503 GLEAN promoter 230129 231128 0.776193 - . ID=CGI_10009541; scaffold1504 GLEAN mRNA 1945 3012 0.999642 - . ID=CGI_10000319; scaffold1504 GLEAN promoter 3013 4012 0.999642 - . ID=CGI_10000319; scaffold1505 GLEAN promoter 6309 7308 1 + . ID=CGI_10001876; scaffold1505 GLEAN mRNA 7309 13325 1 + . ID=CGI_10001876; scaffold1505 GLEAN promoter 14401 15400 0.999585 + . ID=CGI_10001877; scaffold1505 GLEAN mRNA 15401 25614 0.999585 + . ID=CGI_10001877; scaffold1505 GLEAN promoter 24645 25644 0.999676 + . ID=CGI_10001878; scaffold1505 GLEAN mRNA 25645 33194 0.999676 + . ID=CGI_10001878; scaffold1506 GLEAN promoter 922 1921 0.166358 + . ID=CGI_10003366; scaffold1506 GLEAN mRNA 1922 14924 0.166358 + . ID=CGI_10003366; scaffold1506 TRF Tandem_Repeat 6595 6631 74 + . . scaffold1506 GLEAN mRNA 7722 22523 0.998625 - . ID=CGI_10003367; scaffold1506 GLEAN promoter 22524 23523 0.998625 - . ID=CGI_10003367; scaffold1506 TRF Tandem_Repeat 25498 25550 106 + . . scaffold1506 GLEAN mRNA 40537 45022 1 - . ID=CGI_10003368; scaffold1506 TRF Tandem_Repeat 44065 44122 116 + . . scaffold1506 TRF Tandem_Repeat 44481 44539 118 + . . scaffold1506 GLEAN promoter 45023 46022 1 - . ID=CGI_10003368; scaffold1506 TRF Tandem_Repeat 46175 46200 52 + . . scaffold1506 WUBlastX LINE_RTE-X 48246 48791 56 - . . scaffold1506 WUBlastX LINE_RTE-BovB 48373 48513 57 - . . scaffold1506 WUBlastX LINE_RTE-X 48405 48746 87 - . . scaffold1506 WUBlastX LINE_RTE-X 48501 48776 119 - . . scaffold1506 WUBlastX LINE_R1 48504 48932 56 - . . scaffold1506 WUBlastX LINE_RTE-X 48510 48836 101 - . . scaffold1506 WUBlastX LINE_L1 49503 49793 54 - . . scaffold1506 WUBlastX LINE_RTE-X 49581 50144 146 - . . scaffold1506 TRF Tandem_Repeat 51331 51406 145 + . . scaffold1506 TRF Tandem_Repeat 55976 56130 159 + . . scaffold1506 TRF Tandem_Repeat 58524 58669 148 + . . scaffold1506 TRF Tandem_Repeat 59351 59389 78 + . . scaffold1506 TRF Tandem_Repeat 62414 62438 50 + . . scaffold1506 TRF Tandem_Repeat 62492 62560 138 + . . scaffold1506 TRF Tandem_Repeat 68490 69320 1115 + . . scaffold1507 GLEAN promoter 1 31 0.675757 + . ID=CGI_10001767; scaffold1507 GLEAN mRNA 32 12359 0.675757 + . ID=CGI_10001767; scaffold1507 TRF Tandem_Repeat 1161 1191 62 + . . scaffold1507 TRF Tandem_Repeat 2071 2106 72 + . . scaffold1507 GLEAN mRNA 8112 20039 0.965106 - . ID=CGI_10001768; scaffold1507 TRF Tandem_Repeat 9652 10781 783 + . . scaffold1507 TRF Tandem_Repeat 9681 10269 454 + . . scaffold1507 WUBlastX LTR_Ngaro 12947 13423 145 + . . scaffold1507 WUBlastX LTR_Ngaro 13353 13787 108 + . . scaffold1507 WUBlastX LTR_Ngaro 13515 13787 189 + . . scaffold1507 WUBlastX LTR_Ngaro 13521 14015 118 + . . scaffold1507 WUBlastX LTR_Ngaro 13898 14131 144 + . . scaffold1507 WUBlastX LTR_Ngaro 14107 14325 99 + . . scaffold1507 GLEAN promoter 19194 20193 0.99937 + . ID=CGI_10001769; scaffold1507 GLEAN promoter 19604 20603 0.956459 + . ID=CGI_10001770; scaffold1507 GLEAN promoter 20040 21039 0.965106 - . ID=CGI_10001768; scaffold1507 GLEAN mRNA 20194 20373 0.99937 + . ID=CGI_10001769; scaffold1507 GLEAN mRNA 20604 20999 0.956459 + . ID=CGI_10001770; scaffold1507 GLEAN mRNA 21083 22151 0.967615 - . ID=CGI_10001771; scaffold1507 GLEAN promoter 22152 23151 0.967615 - . ID=CGI_10001771; scaffold1507 GLEAN promoter 23518 24517 0.999372 + . ID=CGI_10001772; scaffold1507 GLEAN mRNA 24518 24700 0.999372 + . ID=CGI_10001772; scaffold1507 WUBlastX DNA_hAT-Tip100 25102 26775 1238 - . . scaffold1508 TRF Tandem_Repeat 14270 14311 50 + . . scaffold1508 GLEAN promoter 23058 24057 0.733495 + . ID=CGI_10007800; scaffold1508 GLEAN mRNA 24058 25032 0.733495 + . ID=CGI_10007800; scaffold1508 GLEAN mRNA 30674 71423 0.813369 - . ID=CGI_10007801; scaffold1508 TRF Tandem_Repeat 33105 33160 78 + . . scaffold1508 TRF Tandem_Repeat 42742 42967 337 + . . scaffold1508 TRF Tandem_Repeat 67372 67430 118 + . . scaffold1508 GLEAN promoter 71424 72423 0.813369 - . ID=CGI_10007801; scaffold1508 GLEAN mRNA 80428 85556 0.770548 - . ID=CGI_10007802; scaffold1508 GLEAN promoter 85557 86556 0.770548 - . ID=CGI_10007802; scaffold1508 GLEAN promoter 87111 88110 0.989894 + . ID=CGI_10007803; scaffold1508 GLEAN mRNA 88111 107923 0.989894 + . ID=CGI_10007803; scaffold1508 TRF Tandem_Repeat 97198 97240 86 + . . scaffold1508 TRF Tandem_Repeat 98520 98572 97 + . . scaffold1508 GLEAN promoter 109354 110353 1 + . ID=CGI_10007804; scaffold1508 GLEAN mRNA 110354 111616 1 + . ID=CGI_10007804; scaffold1508 TRF Tandem_Repeat 110634 110688 110 + . . scaffold1508 GLEAN promoter 111074 112073 0.721117 + . ID=CGI_10007805; scaffold1508 GLEAN mRNA 112074 116357 0.721117 + . ID=CGI_10007805; scaffold1508 GLEAN mRNA 116630 145116 0.499376 - . ID=CGI_10007806; scaffold1508 TRF Tandem_Repeat 117132 117228 103 + . . scaffold1508 TRF Tandem_Repeat 117146 117216 87 + . . scaffold1508 TRF Tandem_Repeat 119156 119203 51 + . . scaffold1508 TRF Tandem_Repeat 119159 119203 72 + . . scaffold1508 GLEAN promoter 123449 124448 0.871056 + . ID=CGI_10007807; scaffold1508 GLEAN mRNA 124449 143526 0.871056 + . ID=CGI_10007807; scaffold1508 TRF Tandem_Repeat 132588 132649 124 + . . scaffold1508 TRF Tandem_Repeat 141328 142078 1020 + . . scaffold1508 WUBlastX DNA_TcMar-Tc1 143699 144730 417 + . . scaffold1508 GLEAN promoter 145117 146116 0.499376 - . ID=CGI_10007806; scaffold1508 GLEAN mRNA 146112 147290 1 - . ID=CGI_10007808; scaffold1508 GLEAN promoter 146980 147979 0.989916 + . ID=CGI_10007809; scaffold1508 GLEAN promoter 147291 148290 1 - . ID=CGI_10007808; scaffold1508 GLEAN mRNA 147980 168233 0.989916 + . ID=CGI_10007809; scaffold1508 TRF Tandem_Repeat 155653 155714 70 + . . scaffold1508 TRF Tandem_Repeat 155653 155723 88 + . . scaffold1508 TRF Tandem_Repeat 156554 156602 82 + . . scaffold1508 TRF Tandem_Repeat 160161 160204 88 + . . scaffold1508 WUBlastX LINE_L2 173877 174170 37 + . . scaffold1508 WUBlastX LINE_RTE-X 173925 174251 101 + . . scaffold1508 WUBlastX LINE_RTE-X 174254 174337 39 + . . scaffold1508 WUBlastX LINE_RTE-X 175074 175136 22 + . . scaffold1508 WUBlastX LINE_RTE-X 175077 175127 31 + . . scaffold1508 WUBlastX LINE_RTE-X 175236 175319 26 + . . scaffold1508 TRF Tandem_Repeat 176276 176324 98 + . . scaffold1508 TRF Tandem_Repeat 178271 178317 94 + . . scaffold1508 TRF Tandem_Repeat 184407 185491 2170 + . . scaffold1508 TRF Tandem_Repeat 186182 186236 101 + . . scaffold1509 WUBlastX LINE_CR1 5442 5561 43 - . . scaffold1509 TRF Tandem_Repeat 16121 16176 112 + . . scaffold1509 WUBlastX DNA_Crypton 19971 20582 56 - . . scaffold1509 GLEAN mRNA 25873 36362 0.990769 - . ID=CGI_10007240; scaffold1509 TRF Tandem_Repeat 29731 29891 85 + . . scaffold1509 TRF Tandem_Repeat 29981 30068 167 + . . scaffold1509 TRF Tandem_Repeat 30810 30992 89 + . . scaffold1509 TRF Tandem_Repeat 32553 32621 122 + . . scaffold1509 TRF Tandem_Repeat 34287 34335 89 + . . scaffold1509 GLEAN promoter 36363 37362 0.990769 - . ID=CGI_10007240; scaffold1509 TRF Tandem_Repeat 36717 36764 96 + . . scaffold1509 TRF Tandem_Repeat 38243 38297 60 + . . scaffold1509 TRF Tandem_Repeat 38246 38297 68 + . . scaffold1509 TRF Tandem_Repeat 38252 38292 64 + . . scaffold1509 TRF Tandem_Repeat 42117 42156 80 + . . scaffold1509 WUBlastX DNA_TcMar-Tc1 63890 64435 165 + . . scaffold1509 WUBlastX DNA_TcMar-Tc1 64392 64859 237 + . . scaffold1509 TRF Tandem_Repeat 65128 65154 54 + . . scaffold1509 TRF Tandem_Repeat 66174 66302 258 + . . scaffold1509 TRF Tandem_Repeat 93124 93159 54 + . . scaffold1509 TRF Tandem_Repeat 93125 93155 53 + . . scaffold1509 TRF Tandem_Repeat 93166 93854 895 + . . scaffold1509 TRF Tandem_Repeat 98702 98740 78 + . . scaffold1509 WUBlastX LINE_Jockey 99764 99943 24 - . . scaffold1509 WUBlastX LINE_CR1-L2 99764 99853 29 - . . scaffold1509 WUBlastX LINE_L2 100047 100874 572 - . . scaffold1509 WUBlastX LINE_L2 100092 101057 323 - . . scaffold1509 GLEAN mRNA 108521 141226 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 109214 109255 77 + . . scaffold1509 TRF Tandem_Repeat 111055 111108 99 + . . scaffold1509 TRF Tandem_Repeat 112564 112613 100 + . . scaffold1509 TRF Tandem_Repeat 115789 115867 144 + . . scaffold1509 TRF Tandem_Repeat 121037 121097 122 + . . scaffold1509 TRF Tandem_Repeat 126890 126938 89 + . . scaffold1509 TRF Tandem_Repeat 132692 132767 145 + . . scaffold1509 TRF Tandem_Repeat 138207 138483 374 + . . scaffold1509 GLEAN promoter 141227 142226 0.885266 - . ID=CGI_10007241; scaffold1509 TRF Tandem_Repeat 150895 151117 198 + . . scaffold1509 WUBlastX LINE_RTE-X 154565 154846 52 - . . scaffold1509 TRF Tandem_Repeat 156879 156921 86 + . . scaffold1509 GLEAN promoter 162719 163718 0.999921 + . ID=CGI_10007242; scaffold1509 GLEAN mRNA 163719 167621 0.999921 + . ID=CGI_10007242; scaffold1509 GLEAN promoter 167714 168713 0.999997 + . ID=CGI_10007243; scaffold1509 GLEAN mRNA 168714 169169 0.999997 + . ID=CGI_10007243; scaffold1509 WUBlastX LINE_CR1 173522 173845 20 - . . scaffold1511 WUBlastX DNA_Harbinger 8212 8433 86 + . . scaffold1511 GLEAN mRNA 30937 37771 0.992208 - . ID=CGI_10007825; scaffold1511 GLEAN promoter 37772 38771 0.992208 - . ID=CGI_10007825; scaffold1511 TRF Tandem_Repeat 55268 55319 68 + . . scaffold1511 WUBlastX LINE_L2 64840 66498 1011 - . . scaffold1511 WUBlastX LINE_RTE-X 75692 76069 86 + . . scaffold1511 WUBlastX LINE_RTE-X 76150 76251 20 + . . scaffold1511 WUBlastX LINE_RTE-X 76239 76508 86 + . . scaffold1511 GLEAN mRNA 82973 84694 0.999479 - . ID=CGI_10007826; scaffold1511 GLEAN promoter 84695 85694 0.999479 - . ID=CGI_10007826; scaffold1511 TRF Tandem_Repeat 85881 85928 80 + . . scaffold1511 GLEAN promoter 86394 87393 0.999999 + . ID=CGI_10007827; scaffold1511 GLEAN mRNA 87394 93803 0.999999 + . ID=CGI_10007827; scaffold1511 GLEAN mRNA 102665 113037 0.650985 - . ID=CGI_10007828; scaffold1511 GLEAN promoter 113038 114037 0.650985 - . ID=CGI_10007828; scaffold1511 WUBlastX DNA_IS4EU 126307 126849 98 + . . scaffold1511 TRF Tandem_Repeat 159077 159117 82 + . . scaffold1511 TRF Tandem_Repeat 167741 168368 1004 + . . scaffold1511 WUBlastX DNA_Crypton 169876 171111 104 + . . scaffold1511 WUBlastX DNA_Crypton 170227 170976 132 + . . scaffold1511 TRF Tandem_Repeat 182282 182327 92 + . . scaffold1512 WUBlastX LTR_Ngaro 2821 3144 95 + . . scaffold1512 WUBlastX LTR_Ngaro 3414 3959 168 + . . scaffold1512 WUBlastX LTR_Ngaro 3959 4099 35 + . . scaffold1512 WUBlastX LTR_Ngaro 4100 4408 85 + . . scaffold1512 WUBlastX LTR_Ngaro 4154 4612 36 + . . scaffold1512 WUBlastX LTR_Ngaro 4157 4489 111 + . . scaffold1512 TRF Tandem_Repeat 6049 6097 80 + . . scaffold1512 GLEAN mRNA 8931 9596 0.979657 - . ID=CGI_10019849; scaffold1512 GLEAN promoter 9597 10596 0.979657 - . ID=CGI_10019849; scaffold1512 WUBlastX LTR_Gypsy 9703 10974 582 - . . scaffold1512 WUBlastX LTR_Gypsy 9910 12198 1620 - . . scaffold1512 TRF Tandem_Repeat 15860 16239 516 + . . scaffold1512 TRF Tandem_Repeat 26445 26495 93 + . . scaffold1512 GLEAN promoter 27519 28518 0.216715 + . ID=CGI_10019850; scaffold1512 GLEAN mRNA 28519 43315 0.216715 + . ID=CGI_10019850; scaffold1512 TRF Tandem_Repeat 31110 31155 58 + . . scaffold1512 TRF Tandem_Repeat 31747 31793 58 + . . scaffold1512 TRF Tandem_Repeat 67914 67945 64 + . . scaffold1512 WUBlastX DNA_IS4EU 68693 69043 27 + . . scaffold1512 WUBlastX DNA_Kolobok-IS4 68828 69019 28 + . . scaffold1512 WUBlastX DNA_Kolobok-IS4 69559 69696 37 + . . scaffold1512 WUBlastX DNA_Kolobok-IS4 69711 70049 148 + . . scaffold1512 WUBlastX DNA_IS4EU 69976 70320 185 + . . scaffold1512 WUBlastX DNA_IS4EU 70417 71121 133 - . . scaffold1512 WUBlastX DNA_IS4EU 70540 71037 153 - . . scaffold1512 WUBlastX DNA_Kolobok-IS4 72078 72641 43 - . . scaffold1512 WUBlastX DNA_IS4EU 72177 72509 59 - . . scaffold1512 WUBlastX DNA_Kolobok-IS4 72177 72689 54 - . . scaffold1512 WUBlastX LINE_L1 73439 73555 24 - . . scaffold1512 WUBlastX LINE_L1-Tx1 73503 73919 93 - . . scaffold1512 WUBlastX LINE_L1-Tx1 73548 74027 51 - . . scaffold1512 WUBlastX LINE_L1-Tx1 74144 75172 246 - . . scaffold1512 WUBlastX LINE_L1-Tx1 75186 75587 142 - . . scaffold1512 WUBlastX LINE_L1-Tx1 75186 75506 257 - . . scaffold1512 WUBlastX LINE_L1-Tx1 76334 76648 31 - . . scaffold1512 WUBlastX LINE_L1-Tx1 76406 76648 56 - . . scaffold1512 WUBlastX LINE_L1-Tx1 76445 76645 65 - . . scaffold1512 WUBlastX LINE_L1-Tx1 76487 76648 118 - . . scaffold1512 WUBlastX LINE_L1-Tx1 76647 76826 135 - . . scaffold1512 WUBlastX LINE_L1-Tx1 76665 76898 36 - . . scaffold1512 WUBlastX LINE_L1 76674 76856 56 - . . scaffold1512 WUBlastX LTR_ERV1 77535 78335 43 + . . scaffold1512 WUBlastX LTR_Gypsy 77841 78443 399 + . . scaffold1512 WUBlastX LTR_Pao 95880 95990 40 - . . scaffold1512 WUBlastX LTR_Pao 95979 96698 31 - . . scaffold1512 WUBlastX LINE_L1 97920 99767 240 + . . scaffold1512 WUBlastX LINE_L1-Tx1 98490 99773 570 + . . scaffold1512 WUBlastX LINE_L1-Tx1 99784 100440 177 + . . scaffold1512 WUBlastX LINE_L1-Tx1 100395 100865 87 + . . scaffold1512 WUBlastX LINE_L1-Tx1 101104 101547 62 + . . scaffold1512 GLEAN mRNA 103804 112617 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 103903 104904 435 - . . scaffold1512 WUBlastX LTR_Gypsy 107363 107857 121 - . . scaffold1512 WUBlastX LTR_Gypsy 108227 108421 83 - . . scaffold1512 WUBlastX LTR_Gypsy 108350 109927 375 - . . scaffold1512 WUBlastX LTR_Gypsy 108542 109861 1264 - . . scaffold1512 WUBlastX LTR_Gypsy 109814 109969 25 - . . scaffold1512 GLEAN promoter 112618 113617 0.999842 - . ID=CGI_10019851; scaffold1512 WUBlastX LTR_Gypsy 113479 115356 495 - . . scaffold1512 WUBlastX LTR_Gypsy 115189 115410 48 - . . scaffold1512 GLEAN mRNA 115638 115985 0.593342 - . ID=CGI_10019852; scaffold1512 GLEAN promoter 115986 116985 0.593342 - . ID=CGI_10019852; scaffold1512 WUBlastX LTR_Gypsy 116402 116596 85 - . . scaffold1512 WUBlastX LTR_Gypsy 116621 117196 404 - . . scaffold1512 GLEAN mRNA 120055 123908 1 - . ID=CGI_10019853; scaffold1512 GLEAN promoter 123150 124149 0.999897 + . ID=CGI_10019854; scaffold1512 GLEAN promoter 123909 124908 1 - . ID=CGI_10019853; scaffold1512 GLEAN mRNA 124150 128668 0.999897 + . ID=CGI_10019854; scaffold1512 TRF Tandem_Repeat 131295 131654 147 + . . scaffold1512 TRF Tandem_Repeat 167299 167345 51 + . . scaffold1512 GLEAN mRNA 170999 187296 0.265 - . ID=CGI_10019855; scaffold1512 GLEAN promoter 173409 174408 0.220558 + . ID=CGI_10019856; scaffold1512 GLEAN mRNA 174409 182857 0.220558 + . ID=CGI_10019856; scaffold1512 TRF Tandem_Repeat 182541 182573 66 + . . scaffold1512 GLEAN promoter 187297 188296 0.265 - . ID=CGI_10019855; scaffold1512 WUBlastX LINE_RTE-BovB 191902 192249 54 - . . scaffold1512 WUBlastX LINE_RTE-BovB 192130 192549 77 - . . scaffold1512 WUBlastX LINE_RTE-BovB 192561 192896 108 - . . scaffold1512 WUBlastX LINE_RTE-BovB 192753 192923 20 - . . scaffold1512 TRF Tandem_Repeat 192932 192962 62 + . . scaffold1512 GLEAN promoter 193183 194182 0.76379 + . ID=CGI_10019857; scaffold1512 GLEAN mRNA 194183 200582 0.76379 + . ID=CGI_10019857; scaffold1512 TRF Tandem_Repeat 197973 198071 83 + . . scaffold1512 TRF Tandem_Repeat 199113 199206 109 + . . scaffold1512 TRF Tandem_Repeat 200682 200782 150 + . . scaffold1512 WUBlastX DNA_TcMar-Tc1 202052 202192 88 - . . scaffold1512 WUBlastX DNA_TcMar-Tc1 202082 202204 93 - . . scaffold1512 TRF Tandem_Repeat 202923 202988 57 + . . scaffold1512 TRF Tandem_Repeat 202928 202985 64 + . . scaffold1512 TRF Tandem_Repeat 208161 208185 50 + . . scaffold1512 WUBlastX DNA_IS4EU 209147 209371 20 + . . scaffold1512 WUBlastX DNA_IS4EU 210060 210182 23 + . . scaffold1512 WUBlastX DNA_IS4EU 210374 211180 260 + . . scaffold1512 WUBlastX DNA_Kolobok-IS4 210524 211192 299 + . . scaffold1512 WUBlastX DNA_IS4EU 211583 212239 371 - . . scaffold1512 WUBlastX DNA_IS4EU 211586 212431 320 - . . scaffold1512 WUBlastX DNA_Kolobok-IS4 213218 213433 33 - . . scaffold1512 GLEAN mRNA 216898 224169 0.840618 - . ID=CGI_10019858; scaffold1512 GLEAN promoter 224170 225169 0.840618 - . ID=CGI_10019858; scaffold1512 GLEAN promoter 226616 227615 0.504602 + . ID=CGI_10019859; scaffold1512 GLEAN mRNA 227616 232174 0.504602 + . ID=CGI_10019859; scaffold1512 GLEAN promoter 232779 233778 0.409363 + . ID=CGI_10019860; scaffold1512 GLEAN mRNA 233779 246625 0.409363 + . ID=CGI_10019860; scaffold1512 GLEAN promoter 246450 247449 0.946175 + . ID=CGI_10019861; scaffold1512 GLEAN mRNA 247450 249288 0.946175 + . ID=CGI_10019861; scaffold1512 GLEAN mRNA 252447 267521 1 - . ID=CGI_10019862; scaffold1512 GLEAN promoter 267522 268521 1 - . ID=CGI_10019862; scaffold1512 TRF Tandem_Repeat 270372 270416 90 + . . scaffold1512 WUBlastX LINE_RTE-X 270615 270974 112 - . . scaffold1512 WUBlastX LINE_RTE-X 270893 271567 139 - . . scaffold1512 WUBlastX LINE_RTE-X 271016 271567 254 - . . scaffold1512 TRF Tandem_Repeat 273890 273929 80 + . . scaffold1512 GLEAN mRNA 298236 299892 1 - . ID=CGI_10019863; scaffold1512 GLEAN promoter 299372 300371 0.971528 + . ID=CGI_10019864; scaffold1512 TRF Tandem_Repeat 299738 299766 51 + . . scaffold1512 GLEAN promoter 299893 300892 1 - . ID=CGI_10019863; scaffold1512 GLEAN mRNA 300372 303489 0.971528 + . ID=CGI_10019864; scaffold1512 TRF Tandem_Repeat 304994 305059 123 + . . scaffold1512 GLEAN mRNA 308273 311479 0.65088 - . ID=CGI_10019865; scaffold1512 GLEAN promoter 311480 312479 0.65088 - . ID=CGI_10019865; scaffold1512 GLEAN promoter 339678 340677 0.27871 + . ID=CGI_10019866; scaffold1512 GLEAN mRNA 340678 347111 0.27871 + . ID=CGI_10019866; scaffold1512 TRF Tandem_Repeat 343886 343917 55 + . . scaffold1512 GLEAN promoter 352069 353068 0.836757 + . ID=CGI_10019867; scaffold1512 GLEAN mRNA 353069 360136 0.836757 + . ID=CGI_10019867; scaffold1512 GLEAN mRNA 360657 365194 1 - . ID=CGI_10019868; scaffold1512 GLEAN promoter 365195 366194 1 - . ID=CGI_10019868; scaffold1512 WUBlastX DNA_PiggyBac 371853 373244 482 + . . scaffold1512 WUBlastX DNA_PiggyBac 373154 373435 47 + . . scaffold1512 TRF Tandem_Repeat 377246 377272 54 + . . scaffold1512 TRF Tandem_Repeat 382326 382460 139 + . . scaffold1512 GLEAN promoter 407436 408435 0.769664 + . ID=CGI_10019869; scaffold1512 GLEAN mRNA 408436 410570 0.769664 + . ID=CGI_10019869; scaffold1512 TRF Tandem_Repeat 411819 411886 50 + . . scaffold1512 TRF Tandem_Repeat 419219 419249 62 + . . scaffold1512 TRF Tandem_Repeat 420631 420807 130 + . . scaffold1512 TRF Tandem_Repeat 442225 442291 89 + . . scaffold1512 GLEAN promoter 443187 444186 0.892852 + . ID=CGI_10019870; scaffold1512 GLEAN mRNA 444187 455004 0.892852 + . ID=CGI_10019870; scaffold1512 GLEAN promoter 454004 455003 0.166215 + . ID=CGI_10019871; scaffold1512 GLEAN mRNA 455004 459594 0.166215 + . ID=CGI_10019871; scaffold1512 WUBlastX LTR_DIRS 465403 466386 752 - . . scaffold1512 WUBlastX LTR_DIRS 467596 469539 912 - . . scaffold1512 TRF Tandem_Repeat 470570 471310 634 + . . scaffold1512 GLEAN promoter 472391 473390 0.478382 + . ID=CGI_10019872; scaffold1512 GLEAN mRNA 473391 476958 0.478382 + . ID=CGI_10019872; scaffold1512 TRF Tandem_Repeat 484160 485147 1516 + . . scaffold1512 TRF Tandem_Repeat 491415 491475 122 + . . scaffold1512 GLEAN mRNA 495502 499794 0.641037 - . ID=CGI_10019873; scaffold1512 WUBlastX LINE_RTE-BovB 499737 499943 76 + . . scaffold1512 GLEAN promoter 499795 500794 0.641037 - . ID=CGI_10019873; scaffold1512 GLEAN promoter 502721 503720 0.999471 + . ID=CGI_10019874; scaffold1512 GLEAN mRNA 503721 510610 0.999471 + . ID=CGI_10019874; scaffold1512 GLEAN mRNA 515853 518840 0.999999 - . ID=CGI_10019875; scaffold1512 GLEAN promoter 518841 519840 0.999999 - . ID=CGI_10019875; scaffold1512 GLEAN mRNA 524189 530966 0.835748 - . ID=CGI_10019876; scaffold1512 TRF Tandem_Repeat 526667 527019 514 + . . scaffold1512 GLEAN promoter 530967 531966 0.835748 - . ID=CGI_10019876; scaffold1512 TRF Tandem_Repeat 537774 537825 97 + . . scaffold1512 GLEAN mRNA 545604 551140 0.889634 - . ID=CGI_10019877; scaffold1512 GLEAN promoter 551141 552140 0.889634 - . ID=CGI_10019877; scaffold1512 GLEAN mRNA 556936 559624 0.999415 - . ID=CGI_10019878; scaffold1512 GLEAN promoter 559625 560624 0.999415 - . ID=CGI_10019878; scaffold1512 WUBlastX LINE_RTE-BovB 573772 573849 41 + . . scaffold1512 WUBlastX LINE_RTE-BovB 573875 573985 28 + . . scaffold1512 GLEAN mRNA 582013 584007 0.985274 - . ID=CGI_10019879; scaffold1512 GLEAN promoter 584008 585007 0.985274 - . ID=CGI_10019879; scaffold1512 GLEAN mRNA 584068 595193 0.799199 - . ID=CGI_10019880; scaffold1512 TRF Tandem_Repeat 592445 593569 1562 + . . scaffold1512 TRF Tandem_Repeat 593593 593658 105 + . . scaffold1512 TRF Tandem_Repeat 593596 593658 99 + . . scaffold1512 TRF Tandem_Repeat 593600 593659 75 + . . scaffold1512 GLEAN promoter 595194 596193 0.799199 - . ID=CGI_10019880; scaffold1512 GLEAN promoter 597482 598481 0.412716 + . ID=CGI_10019881; scaffold1512 GLEAN mRNA 598482 598868 0.412716 + . ID=CGI_10019881; scaffold1512 GLEAN promoter 602828 603827 0.164355 + . ID=CGI_10019882; scaffold1512 GLEAN mRNA 603828 612711 0.164355 + . ID=CGI_10019882; scaffold1513 WUBlastX DNA_IS 545 1522 255 + . . scaffold1513 GLEAN mRNA 21005 25925 0.447467 - . ID=CGI_10002273; scaffold1513 GLEAN promoter 25926 26925 0.447467 - . ID=CGI_10002273; scaffold1513 GLEAN mRNA 26956 28374 0.505851 - . ID=CGI_10002275; scaffold1513 GLEAN promoter 28375 29374 0.505851 - . ID=CGI_10002275; scaffold1513 GLEAN mRNA 29689 30876 0.999572 - . ID=CGI_10002277; scaffold1513 GLEAN promoter 30877 31876 0.999572 - . ID=CGI_10002277; scaffold1514 GLEAN mRNA 8901 11855 0.999203 - . ID=CGI_10005307; scaffold1514 GLEAN promoter 11856 12855 0.999203 - . ID=CGI_10005307; scaffold1514 TRF Tandem_Repeat 13205 13239 70 + . . scaffold1514 TRF Tandem_Repeat 16120 16523 375 + . . scaffold1514 TRF Tandem_Repeat 24995 25106 127 + . . scaffold1514 TRF Tandem_Repeat 34923 34948 52 + . . scaffold1514 GLEAN promoter 41052 42051 0.945059 + . ID=CGI_10005308; scaffold1514 TRF Tandem_Repeat 41852 41953 103 + . . scaffold1514 GLEAN mRNA 42052 55235 0.945059 + . ID=CGI_10005308; scaffold1514 TRF Tandem_Repeat 44424 44470 85 + . . scaffold1514 WUBlastX DNA_IS4EU 56211 56699 52 + . . scaffold1514 WUBlastX DNA_IS4EU 57355 57555 20 + . . scaffold1514 WUBlastX DNA_Kolobok-IS4 57860 58333 233 + . . scaffold1514 WUBlastX DNA_IS4EU 57944 58333 240 + . . scaffold1514 TRF Tandem_Repeat 81507 81536 51 + . . scaffold1514 TRF Tandem_Repeat 81537 81569 66 + . . scaffold1514 TRF Tandem_Repeat 89294 89385 121 + . . scaffold1514 TRF Tandem_Repeat 89455 89525 54 + . . scaffold1514 TRF Tandem_Repeat 106303 106359 107 + . . scaffold1514 TRF Tandem_Repeat 114210 114387 71 + . . scaffold1514 TRF Tandem_Repeat 115741 115804 128 + . . scaffold1514 WUBlastX LTR_Gypsy 119853 120557 198 + . . scaffold1514 WUBlastX LTR_Gypsy 122976 123182 77 + . . scaffold1514 WUBlastX LTR_Gypsy 123239 123607 97 + . . scaffold1514 WUBlastX LTR_Gypsy 123462 123929 106 + . . scaffold1514 WUBlastX LTR_Gypsy 123591 123935 230 + . . scaffold1514 WUBlastX LTR_Gypsy 123609 124022 148 + . . scaffold1514 WUBlastX LTR_Gypsy 123964 124044 48 + . . scaffold1515 TRF Tandem_Repeat 4798 5437 965 + . . scaffold1515 WUBlastX LINE_RTE-X 5987 6202 66 + . . scaffold1515 GLEAN mRNA 19140 20762 0.999446 - . ID=CGI_10004441; scaffold1515 GLEAN promoter 20763 21762 0.999446 - . ID=CGI_10004441; scaffold1515 GLEAN promoter 23552 24551 0.455755 + . ID=CGI_10004442; scaffold1515 GLEAN mRNA 24552 34962 0.455755 + . ID=CGI_10004442; scaffold1515 GLEAN mRNA 36492 44365 0.999676 - . ID=CGI_10004443; scaffold1515 TRF Tandem_Repeat 38980 39244 232 + . . scaffold1515 GLEAN promoter 44366 45365 0.999676 - . ID=CGI_10004443; scaffold1515 TRF Tandem_Repeat 50702 50751 64 + . . scaffold1515 GLEAN mRNA 55195 56397 0.999676 - . ID=CGI_10004444; scaffold1515 GLEAN promoter 56398 57397 0.999676 - . ID=CGI_10004444; scaffold1515 GLEAN mRNA 58067 68333 0.749301 - . ID=CGI_10004445; scaffold1515 GLEAN promoter 68334 69333 0.749301 - . ID=CGI_10004445; scaffold1515 TRF Tandem_Repeat 98886 98964 140 + . . scaffold1516 GLEAN mRNA 275 4492 1 - . ID=CGI_10001806; scaffold1516 GLEAN promoter 4493 5492 1 - . ID=CGI_10001806; scaffold1516 GLEAN mRNA 13114 21158 0.999949 - . ID=CGI_10001807; scaffold1516 GLEAN promoter 21159 22158 0.999949 - . ID=CGI_10001807; scaffold1517 GLEAN mRNA 3566 6433 0.650923 - . ID=CGI_10001214; scaffold1517 GLEAN promoter 6434 7433 0.650923 - . ID=CGI_10001214; scaffold1517 GLEAN mRNA 8844 9065 0.733495 - . ID=CGI_10001215; scaffold1517 GLEAN promoter 9066 10065 0.733495 - . ID=CGI_10001215; scaffold1517 GLEAN mRNA 13666 14625 1 - . ID=CGI_10001216; scaffold1517 GLEAN promoter 14626 15625 1 - . ID=CGI_10001216; scaffold1518 GLEAN promoter 1 63 1 + . ID=CGI_10017786; scaffold1518 GLEAN mRNA 64 1318 1 + . ID=CGI_10017786; scaffold1518 WUBlastX LINE_L1-Tx1 24741 24974 75 - . . scaffold1518 WUBlastX LINE_L1-Tx1 24784 26139 482 - . . scaffold1518 WUBlastX LINE_L1-Tx1 26412 26627 51 - . . scaffold1518 WUBlastX LINE_L1-Tx1 42414 43205 27 - . . scaffold1518 WUBlastX LINE_L1-Tx1 42414 42608 84 - . . scaffold1518 WUBlastX LINE_L1 42938 43102 44 - . . scaffold1518 WUBlastX LINE_L1 42941 43144 32 - . . scaffold1518 WUBlastX LINE_L1 42977 43246 32 - . . scaffold1518 WUBlastX LINE_L1-Tx1 43213 43515 135 - . . scaffold1518 WUBlastX LINE_L1-Tx1 43222 43578 112 - . . scaffold1518 WUBlastX LINE_L1 43515 43697 37 - . . scaffold1518 WUBlastX LINE_L1-Tx1 43515 43658 60 - . . scaffold1518 GLEAN promoter 47584 48583 0.999451 + . ID=CGI_10017787; scaffold1518 GLEAN mRNA 48584 48844 0.999451 + . ID=CGI_10017787; scaffold1518 GLEAN promoter 55557 56556 0.557715 + . ID=CGI_10017788; scaffold1518 GLEAN mRNA 56557 76841 0.557715 + . ID=CGI_10017788; scaffold1518 TRF Tandem_Repeat 57608 58224 856 + . . scaffold1518 TRF Tandem_Repeat 66718 66749 64 + . . scaffold1518 TRF Tandem_Repeat 73406 74112 949 + . . scaffold1518 GLEAN promoter 75903 76902 0.999985 + . ID=CGI_10017789; scaffold1518 WUBlastX LTR_DIRS 75961 76206 129 - . . scaffold1518 GLEAN mRNA 76903 86519 0.999985 + . ID=CGI_10017789; scaffold1518 TRF Tandem_Repeat 78238 78298 122 + . . scaffold1518 GLEAN promoter 87223 88222 0.558395 + . ID=CGI_10017790; scaffold1518 GLEAN mRNA 88223 90340 0.558395 + . ID=CGI_10017790; scaffold1518 TRF Tandem_Repeat 92589 92642 63 + . . scaffold1518 TRF Tandem_Repeat 93051 93106 112 + . . scaffold1518 WUBlastX LINE_RTE-BovB 94109 94540 119 - . . scaffold1518 WUBlastX LINE_RTE-RTE 94570 95118 102 - . . scaffold1518 WUBlastX LINE_RTE-BovB 94660 95118 236 - . . scaffold1518 WUBlastX LINE_RTE-RTE 94666 95205 101 - . . scaffold1518 WUBlastX LINE_RTE-BovB 95423 95668 54 - . . scaffold1518 WUBlastX LINE_RTE-BovB 95565 95798 82 - . . scaffold1518 WUBlastX LINE_RTE-BovB 95595 95741 82 - . . scaffold1518 GLEAN promoter 95608 96607 0.773516 + . ID=CGI_10017791; scaffold1518 WUBlastX LINE_RTE-BovB 95619 95738 87 - . . scaffold1518 GLEAN mRNA 96608 101044 0.773516 + . ID=CGI_10017791; scaffold1518 GLEAN mRNA 102295 120319 0.96632 - . ID=CGI_10017792; scaffold1518 TRF Tandem_Repeat 107017 107306 221 + . . scaffold1518 GLEAN promoter 119291 120290 1 + . ID=CGI_10017793; scaffold1518 GLEAN mRNA 120291 121869 1 + . ID=CGI_10017793; scaffold1518 GLEAN promoter 120320 121319 0.96632 - . ID=CGI_10017792; scaffold1518 TRF Tandem_Repeat 121952 121994 63 + . . scaffold1518 GLEAN mRNA 125802 137177 0.999949 - . ID=CGI_10017794; scaffold1518 TRF Tandem_Repeat 129801 130002 147 + . . scaffold1518 TRF Tandem_Repeat 135145 135199 110 + . . scaffold1518 TRF Tandem_Repeat 136316 136373 116 + . . scaffold1518 GLEAN promoter 137178 138177 0.999949 - . ID=CGI_10017794; scaffold1518 TRF Tandem_Repeat 139400 139757 503 + . . scaffold1518 GLEAN mRNA 145398 153173 0.728788 - . ID=CGI_10017795; scaffold1518 TRF Tandem_Repeat 147470 147543 94 + . . scaffold1518 TRF Tandem_Repeat 150045 150250 349 + . . scaffold1518 GLEAN promoter 152424 153423 0.996783 + . ID=CGI_10017796; scaffold1518 GLEAN promoter 153174 154173 0.728788 - . ID=CGI_10017795; scaffold1518 GLEAN mRNA 153424 166490 0.996783 + . ID=CGI_10017796; scaffold1518 TRF Tandem_Repeat 157632 157976 573 + . . scaffold1518 WUBlastX DNA_hAT-Tip100 159448 159714 63 + . . scaffold1518 WUBlastX DNA_hAT-Tip100 159499 159732 181 + . . scaffold1518 WUBlastX DNA_hAT-Tip100 159520 159849 90 + . . scaffold1518 TRF Tandem_Repeat 162580 164308 1125 + . . scaffold1518 TRF Tandem_Repeat 162589 164300 479 + . . scaffold1518 TRF Tandem_Repeat 162593 164294 1052 + . . scaffold1518 TRF Tandem_Repeat 162634 163582 791 + . . scaffold1518 GLEAN promoter 166133 167132 0.996774 + . ID=CGI_10017797; scaffold1518 GLEAN mRNA 167133 182393 0.996774 + . ID=CGI_10017797; scaffold1518 TRF Tandem_Repeat 174922 174956 70 + . . scaffold1518 TRF Tandem_Repeat 176647 176793 213 + . . scaffold1518 GLEAN promoter 196440 197439 0.937841 + . ID=CGI_10017798; scaffold1518 GLEAN mRNA 197440 202532 0.937841 + . ID=CGI_10017798; scaffold1518 GLEAN mRNA 197962 207967 0.333225 - . ID=CGI_10017799; scaffold1518 GLEAN promoter 207968 208967 0.333225 - . ID=CGI_10017799; scaffold1518 GLEAN promoter 209347 210346 0.999512 + . ID=CGI_10017800; scaffold1518 GLEAN mRNA 210347 219718 0.999512 + . ID=CGI_10017800; scaffold1518 TRF Tandem_Repeat 210456 210520 103 + . . scaffold1518 TRF Tandem_Repeat 210459 210520 115 + . . scaffold1518 WUBlastX LINE_Penelope 210560 211144 39 + . . scaffold1518 GLEAN mRNA 212842 213237 0.999996 - . ID=CGI_10017801; scaffold1518 GLEAN promoter 213238 214237 0.999996 - . ID=CGI_10017801; scaffold1518 GLEAN mRNA 213310 213540 0.575104 - . ID=CGI_10017802; scaffold1518 GLEAN promoter 213541 214540 0.575104 - . ID=CGI_10017802; scaffold1518 TRF Tandem_Repeat 221104 226212 5953 + . . scaffold1518 TRF Tandem_Repeat 229614 230478 1299 + . . scaffold1518 TRF Tandem_Repeat 253520 253562 61 + . . scaffold1518 TRF Tandem_Repeat 256905 256947 86 + . . scaffold1518 GLEAN promoter 257241 258240 0.241996 + . ID=CGI_10017803; scaffold1518 GLEAN mRNA 258241 287104 0.241996 + . ID=CGI_10017803; scaffold1518 TRF Tandem_Repeat 264392 264417 52 + . . scaffold1518 WUBlastX LTR_Ngaro 268615 268911 142 - . . scaffold1518 WUBlastX LTR_Ngaro 268905 269555 205 - . . scaffold1518 WUBlastX LTR_Ngaro 269519 270628 704 - . . scaffold1518 WUBlastX LTR_Ngaro 270637 270702 22 - . . scaffold1518 WUBlastX LTR_Ngaro 270928 271764 162 - . . scaffold1518 WUBlastX LTR_Ngaro 271069 271848 190 - . . scaffold1518 WUBlastX LTR_Ngaro 271081 271491 195 - . . scaffold1518 TRF Tandem_Repeat 275443 275500 82 + . . scaffold1518 WUBlastX LINE_L2 285447 285980 85 + . . scaffold1518 WUBlastX LINE_L2 285585 285983 100 + . . scaffold1518 WUBlastX LINE_L2 285648 285986 103 + . . scaffold1518 WUBlastX LINE_L2 285771 285986 107 + . . scaffold1518 WUBlastX LINE_L2 286024 286734 323 + . . scaffold1518 WUBlastX LINE_L2 286682 287965 721 + . . scaffold1518 WUBlastX LINE_L2 286742 288223 712 + . . scaffold1518 WUBlastX LINE_L2 288031 288645 471 + . . scaffold1518 GLEAN mRNA 289127 289886 0.998815 - . ID=CGI_10017804; scaffold1518 GLEAN promoter 289887 290886 0.998815 - . ID=CGI_10017804; scaffold1518 WUBlastX LTR_Gypsy 290591 290665 22 - . . scaffold1518 WUBlastX LTR_Gypsy 291186 291602 118 - . . scaffold1518 WUBlastX LTR_Gypsy 291195 291500 253 - . . scaffold1518 TRF Tandem_Repeat 292807 292831 50 + . . scaffold1518 GLEAN promoter 300576 301575 0.998908 + . ID=CGI_10017805; scaffold1518 GLEAN mRNA 301576 312604 0.998908 + . ID=CGI_10017805; scaffold1518 TRF Tandem_Repeat 302983 303087 65 + . . scaffold1518 TRF Tandem_Repeat 303002 303106 74 + . . scaffold1518 TRF Tandem_Repeat 307117 307164 96 + . . scaffold1518 TRF Tandem_Repeat 318815 318851 51 + . . scaffold1518 GLEAN promoter 319571 320570 0.999676 + . ID=CGI_10017806; scaffold1518 GLEAN mRNA 320571 346924 0.999676 + . ID=CGI_10017806; scaffold1518 TRF Tandem_Repeat 330663 330693 53 + . . scaffold1518 TRF Tandem_Repeat 341754 342068 537 + . . scaffold1518 GLEAN promoter 351790 352789 1 + . ID=CGI_10017807; scaffold1518 GLEAN mRNA 352790 362059 1 + . ID=CGI_10017807; scaffold1518 TRF Tandem_Repeat 360132 360275 163 + . . scaffold1518 TRF Tandem_Repeat 360345 360528 260 + . . scaffold1518 GLEAN mRNA 380835 384356 0.999999 - . ID=CGI_10017809; scaffold1518 TRF Tandem_Repeat 381568 381601 68 + . . scaffold1518 GLEAN promoter 384357 385356 0.999999 - . ID=CGI_10017809; scaffold1518 TRF Tandem_Repeat 393624 393660 74 + . . scaffold1518 TRF Tandem_Repeat 396383 396539 206 + . . scaffold1518 TRF Tandem_Repeat 396398 396539 230 + . . scaffold1518 GLEAN promoter 399168 400167 0.995871 + . ID=CGI_10017810; scaffold1518 GLEAN mRNA 400168 401344 0.995871 + . ID=CGI_10017810; scaffold1518 TRF Tandem_Repeat 402086 402130 81 + . . scaffold1518 GLEAN mRNA 406860 412415 0.979077 - . ID=CGI_10017811; scaffold1518 TRF Tandem_Repeat 409829 409890 124 + . . scaffold1518 GLEAN promoter 412416 413415 0.979077 - . ID=CGI_10017811; scaffold1518 GLEAN mRNA 415151 417525 0.975441 - . ID=CGI_10017812; scaffold1518 GLEAN promoter 417526 418525 0.975441 - . ID=CGI_10017812; scaffold1518 TRF Tandem_Repeat 418019 418075 114 + . . scaffold1518 TRF Tandem_Repeat 418272 418300 58 + . . scaffold1518 TRF Tandem_Repeat 420007 420042 72 + . . scaffold1518 GLEAN mRNA 421619 427340 0.991637 - . ID=CGI_10017813; scaffold1518 WUBlastX LINE_L1 422444 422941 53 - . . scaffold1518 TRF Tandem_Repeat 425838 426292 574 + . . scaffold1518 TRF Tandem_Repeat 425838 426292 578 + . . scaffold1518 GLEAN promoter 427341 428340 0.991637 - . ID=CGI_10017813; scaffold1518 GLEAN mRNA 427821 428306 0.771043 - . ID=CGI_10017814; scaffold1518 GLEAN promoter 428307 429306 0.771043 - . ID=CGI_10017814; scaffold1518 WUBlastX LTR_Ngaro 428669 429022 171 - . . scaffold1518 TRF Tandem_Repeat 429924 429988 69 + . . scaffold1518 TRF Tandem_Repeat 429924 429988 76 + . . scaffold1518 TRF Tandem_Repeat 429933 429988 69 + . . scaffold1518 TRF Tandem_Repeat 433905 433941 58 + . . scaffold1518 TRF Tandem_Repeat 438383 439308 617 + . . scaffold1518 TRF Tandem_Repeat 439789 440089 333 + . . scaffold1518 GLEAN promoter 453061 454060 0.622487 + . ID=CGI_10017815; scaffold1518 TRF Tandem_Repeat 453191 453426 273 + . . scaffold1518 GLEAN mRNA 454061 469419 0.622487 + . ID=CGI_10017815; scaffold1518 TRF Tandem_Repeat 455984 456387 497 + . . scaffold1518 TRF Tandem_Repeat 455984 456387 479 + . . scaffold1518 TRF Tandem_Repeat 455985 456383 526 + . . scaffold1518 TRF Tandem_Repeat 456555 456592 76 + . . scaffold1518 TRF Tandem_Repeat 466593 467307 1053 + . . scaffold1518 WUBlastX LTR_DIRS 467730 467927 106 - . . scaffold1518 WUBlastX LTR_DIRS 467930 468136 50 - . . scaffold1518 WUBlastX LINE_RTE-X 470018 470590 87 + . . scaffold1518 WUBlastX LINE_RTE-X 470081 470473 171 + . . scaffold1518 WUBlastX LINE_RTE-X 470081 470560 160 + . . scaffold1518 WUBlastX LINE_RTE-X 470596 470955 40 + . . scaffold1518 WUBlastX LINE_RTE-X 470635 470931 64 + . . scaffold1518 GLEAN mRNA 474049 485910 0.99294 - . ID=CGI_10017816; scaffold1518 TRF Tandem_Repeat 485282 485355 53 + . . scaffold1518 GLEAN promoter 485911 486910 0.99294 - . ID=CGI_10017816; scaffold1518 TRF Tandem_Repeat 488214 488320 196 + . . scaffold1518 GLEAN mRNA 488933 494327 0.999281 - . ID=CGI_10017817; scaffold1518 TRF Tandem_Repeat 492976 493466 504 + . . scaffold1518 GLEAN promoter 494328 495327 0.999281 - . ID=CGI_10017817; scaffold1518 TRF Tandem_Repeat 499497 499637 131 + . . scaffold1518 TRF Tandem_Repeat 500673 500806 90 + . . scaffold1518 TRF Tandem_Repeat 501866 501945 160 + . . scaffold1518 TRF Tandem_Repeat 505477 505512 72 + . . scaffold1518 TRF Tandem_Repeat 507970 508017 87 + . . scaffold1518 TRF Tandem_Repeat 511457 511507 102 + . . scaffold1518 GLEAN mRNA 517346 517732 0.999969 - . ID=CGI_10017818; scaffold1518 GLEAN promoter 517733 518732 0.999969 - . ID=CGI_10017818; scaffold1518 GLEAN mRNA 518156 518800 0.936029 - . ID=CGI_10017819; scaffold1518 GLEAN promoter 518801 519800 0.936029 - . ID=CGI_10017819; scaffold1518 GLEAN mRNA 519758 519946 0.999372 - . ID=CGI_10017820; scaffold1518 GLEAN promoter 519947 520738 0.999372 - . ID=CGI_10017820; scaffold1519 TRF Tandem_Repeat 5571 6470 895 + . . scaffold1519 GLEAN promoter 10061 11060 0.999942 + . ID=CGI_10005933; scaffold1519 GLEAN mRNA 11061 24904 0.999942 + . ID=CGI_10005933; scaffold1519 TRF Tandem_Repeat 15367 15427 113 + . . scaffold1519 TRF Tandem_Repeat 15518 15550 57 + . . scaffold1519 TRF Tandem_Repeat 19055 19088 52 + . . scaffold1519 WUBlastX DNA_Sola 27745 27987 97 - . . scaffold1519 WUBlastX DNA_Sola 30562 30813 72 - . . scaffold1519 WUBlastX DNA_Sola 32710 33081 33 - . . scaffold1519 TRF Tandem_Repeat 34273 35113 506 + . . scaffold1519 TRF Tandem_Repeat 34386 35113 794 + . . scaffold1519 WUBlastX LINE_L1 70383 70679 59 - . . scaffold1519 WUBlastX LINE_L1-Tx1 70861 70959 21 - . . scaffold1519 TRF Tandem_Repeat 93319 93343 50 + . . scaffold1519 TRF Tandem_Repeat 103173 103214 75 + . . scaffold1519 TRF Tandem_Repeat 123058 123091 68 + . . scaffold1519 TRF Tandem_Repeat 124115 124799 1009 + . . scaffold152 WUBlastX LINE_L2 1601 2539 424 + . . scaffold152 TRF Tandem_Repeat 5117 5384 144 + . . scaffold152 TRF Tandem_Repeat 5135 5348 136 + . . scaffold152 TRF Tandem_Repeat 5136 5348 158 + . . scaffold152 TRF Tandem_Repeat 7081 7137 114 + . . scaffold152 TRF Tandem_Repeat 24704 24744 82 + . . scaffold152 TRF Tandem_Repeat 26924 26964 82 + . . scaffold152 TRF Tandem_Repeat 28087 28336 419 + . . scaffold152 TRF Tandem_Repeat 36002 36077 152 + . . scaffold152 TRF Tandem_Repeat 39887 39911 50 + . . scaffold152 TRF Tandem_Repeat 40329 40389 122 + . . scaffold152 TRF Tandem_Repeat 46047 46400 518 + . . scaffold152 TRF Tandem_Repeat 46977 47135 140 + . . scaffold152 TRF Tandem_Repeat 49889 49964 118 + . . scaffold152 TRF Tandem_Repeat 52552 52790 361 + . . scaffold152 TRF Tandem_Repeat 54587 54637 52 + . . scaffold152 TRF Tandem_Repeat 55618 56531 922 + . . scaffold152 GLEAN mRNA 60138 75351 0.999676 - . ID=CGI_10014894; scaffold152 TRF Tandem_Repeat 62932 63847 1329 + . . scaffold152 TRF Tandem_Repeat 64604 64734 110 + . . scaffold152 WUBlastX LINE_CR1 74201 74530 230 + . . scaffold152 WUBlastX LINE_CR1-L2 74261 74626 78 + . . scaffold152 WUBlastX LINE_CR1 74536 74691 78 + . . scaffold152 TRF Tandem_Repeat 74822 74851 60 + . . scaffold152 GLEAN promoter 75352 76351 0.999676 - . ID=CGI_10014894; scaffold152 TRF Tandem_Repeat 75877 76028 162 + . . scaffold152 WUBlastX LINE_RTE-X 76206 76433 52 + . . scaffold152 WUBlastX LINE_RTE-X 76257 76436 69 + . . scaffold152 WUBlastX LINE_RTE-X 77406 77693 88 + . . scaffold152 WUBlastX LINE_L1-Tx1 77714 77878 82 + . . scaffold152 WUBlastX LINE_L1-Tx1 77856 78101 145 + . . scaffold152 WUBlastX LINE_L1 78908 79036 26 + . . scaffold152 TRF Tandem_Repeat 79053 79332 499 + . . scaffold152 TRF Tandem_Repeat 79573 79604 64 + . . scaffold152 TRF Tandem_Repeat 80092 80123 64 + . . scaffold152 TRF Tandem_Repeat 80174 80213 64 + . . scaffold152 TRF Tandem_Repeat 80482 80512 62 + . . scaffold152 TRF Tandem_Repeat 90492 90539 87 + . . scaffold152 WUBlastX DNA_Sola 96433 96972 25 + . . scaffold152 WUBlastX DNA_Sola 96723 96896 35 + . . scaffold152 WUBlastX DNA_Sola 96941 97066 24 + . . scaffold152 WUBlastX DNA_Sola 97105 97551 46 + . . scaffold152 WUBlastX DNA_Sola 97174 97494 156 + . . scaffold152 WUBlastX DNA_Sola 97461 98078 315 + . . scaffold152 TRF Tandem_Repeat 98274 98334 50 + . . scaffold152 TRF Tandem_Repeat 100029 100063 52 + . . scaffold152 TRF Tandem_Repeat 100256 100335 160 + . . scaffold152 TRF Tandem_Repeat 100535 100609 78 + . . scaffold152 TRF Tandem_Repeat 101567 101655 90 + . . scaffold152 TRF Tandem_Repeat 101592 101655 58 + . . scaffold152 WUBlastX LTR_Gypsy 110377 112020 1082 + . . scaffold152 WUBlastX LTR_Gypsy 111376 112152 173 + . . scaffold152 WUBlastX LTR_Copia 112000 112194 32 + . . scaffold152 TRF Tandem_Repeat 119593 119620 56 + . . scaffold152 TRF Tandem_Repeat 136245 136986 941 + . . scaffold152 TRF Tandem_Repeat 138403 138436 52 + . . scaffold152 TRF Tandem_Repeat 142469 142501 66 + . . scaffold152 WUBlastX LINE_Penelope 142890 143438 169 - . . scaffold152 WUBlastX LINE_Penelope 149249 150520 298 - . . scaffold152 WUBlastX LINE_Penelope 149948 150622 228 - . . scaffold152 TRF Tandem_Repeat 171723 171752 51 + . . scaffold152 TRF Tandem_Repeat 173894 173957 66 + . . scaffold152 WUBlastX LTR_Gypsy 177886 178593 259 - . . scaffold152 WUBlastX LTR_Gypsy 177994 178662 378 - . . scaffold152 WUBlastX LTR_Gypsy 178378 178728 79 - . . scaffold152 WUBlastX LTR_Gypsy 178728 179291 149 - . . scaffold152 WUBlastX LTR_Gypsy 178893 179303 274 - . . scaffold152 WUBlastX LTR_Gypsy 178935 179384 118 - . . scaffold152 WUBlastX LTR_Gypsy 179305 179427 88 - . . scaffold152 TRF Tandem_Repeat 210440 210473 59 + . . scaffold152 TRF Tandem_Repeat 217625 217671 73 + . . scaffold152 TRF Tandem_Repeat 217625 217671 76 + . . scaffold152 TRF Tandem_Repeat 218326 219695 1666 + . . scaffold152 TRF Tandem_Repeat 229827 229857 53 + . . scaffold152 TRF Tandem_Repeat 234683 235521 648 + . . scaffold152 WUBlastX LINE_L1-Tx1 243562 243645 52 - . . scaffold152 WUBlastX LINE_R2-Hero 247791 248060 198 - . . scaffold152 WUBlastX LINE_R2-Hero 247812 248159 119 - . . scaffold152 WUBlastX LINE_R2-Hero 248078 248182 20 - . . scaffold152 GLEAN mRNA 249726 250223 0.776794 - . ID=CGI_10014895; scaffold152 GLEAN promoter 250224 251223 0.776794 - . ID=CGI_10014895; scaffold152 GLEAN promoter 253015 254014 0.99176 + . ID=CGI_10014896; scaffold152 GLEAN mRNA 254015 259771 0.99176 + . ID=CGI_10014896; scaffold152 WUBlastX LTR_Pao 262945 263109 60 + . . scaffold152 WUBlastX LTR_Pao 262981 263226 181 + . . scaffold152 WUBlastX LTR_Pao 263267 263689 263 + . . scaffold152 WUBlastX LTR_Pao 263815 263991 166 + . . scaffold152 WUBlastX LTR_Pao 263985 264527 489 + . . scaffold152 WUBlastX LTR_Pao 264518 265015 396 + . . scaffold152 WUBlastX LTR_Gypsy 279013 279270 66 - . . scaffold152 WUBlastX LTR_Gypsy 279097 279420 89 - . . scaffold152 WUBlastX LTR_Gypsy 279097 279276 98 - . . scaffold152 WUBlastX DNA_Maverick 279368 279508 92 + . . scaffold152 TRF Tandem_Repeat 286711 286747 74 + . . scaffold152 TRF Tandem_Repeat 291341 291489 70 + . . scaffold152 GLEAN mRNA 295073 296467 0.99999 - . ID=CGI_10014897; scaffold152 GLEAN promoter 296468 297467 0.99999 - . ID=CGI_10014897; scaffold152 GLEAN mRNA 296688 308228 1 - . ID=CGI_10014898; scaffold152 TRF Tandem_Repeat 298151 298248 103 + . . scaffold152 TRF Tandem_Repeat 298151 298248 103 + . . scaffold152 GLEAN promoter 308229 309228 1 - . ID=CGI_10014898; scaffold152 TRF Tandem_Repeat 309459 309504 92 + . . scaffold152 TRF Tandem_Repeat 309756 309791 63 + . . scaffold152 TRF Tandem_Repeat 313263 313299 74 + . . scaffold152 WUBlastX LTR_Gypsy 317342 317488 66 - . . scaffold152 WUBlastX LTR_Copia 317541 317987 36 - . . scaffold152 WUBlastX DNA_Maverick 324985 325488 144 - . . scaffold152 WUBlastX DNA_Maverick 324985 325410 180 - . . scaffold152 GLEAN promoter 325766 326765 0.295405 + . ID=CGI_10014899; scaffold152 GLEAN mRNA 326766 349856 0.295405 + . ID=CGI_10014899; scaffold152 WUBlastX LINE_L1-Tx1 335060 335581 223 - . . scaffold152 WUBlastX LINE_L1-Tx1 335072 335674 103 - . . scaffold152 GLEAN mRNA 335750 337141 0.992563 - . ID=CGI_10014900; scaffold152 WUBlastX LINE_L1-Tx1 336503 337123 185 - . . scaffold152 GLEAN promoter 337142 338141 0.992563 - . ID=CGI_10014900; scaffold152 WUBlastX LTR_Ngaro 342560 342952 88 + . . scaffold152 TRF Tandem_Repeat 348045 348092 55 + . . scaffold152 TRF Tandem_Repeat 348059 348108 50 + . . scaffold152 WUBlastX RC_Helitron 354265 354336 22 + . . scaffold152 WUBlastX RC_Helitron 354675 355124 123 + . . scaffold152 TRF Tandem_Repeat 359646 361884 2123 + . . scaffold152 GLEAN promoter 361447 362446 0.554335 + . ID=CGI_10014901; scaffold152 GLEAN mRNA 362447 367845 0.554335 + . ID=CGI_10014901; scaffold152 TRF Tandem_Repeat 370179 370967 1106 + . . scaffold152 WUBlastX DNA_Kolobok 382758 383429 42 + . . scaffold152 WUBlastX DNA_En-Spm 386201 386992 343 + . . scaffold152 WUBlastX DNA_En-Spm 386991 387470 335 + . . scaffold152 WUBlastX DNA_En-Spm 387422 387829 248 + . . scaffold152 WUBlastX DNA_En-Spm 387422 387925 243 + . . scaffold152 WUBlastX DNA_En-Spm 387832 388113 110 + . . scaffold152 TRF Tandem_Repeat 402815 404682 2611 + . . scaffold152 TRF Tandem_Repeat 404844 404905 63 + . . scaffold152 GLEAN promoter 408884 409883 1 + . ID=CGI_10014902; scaffold152 GLEAN mRNA 409884 410249 1 + . ID=CGI_10014902; scaffold1520 GLEAN promoter 1342 2341 0.999375 + . ID=CGI_10000514; scaffold1520 GLEAN promoter 1612 2611 0.999372 + . ID=CGI_10000515; scaffold1520 GLEAN mRNA 1745 1933 1 - . ID=CGI_10000513; scaffold1520 GLEAN promoter 1934 2933 1 - . ID=CGI_10000513; scaffold1520 GLEAN mRNA 2342 2602 0.999375 + . ID=CGI_10000514; scaffold1520 GLEAN mRNA 2612 2842 0.999372 + . ID=CGI_10000515; scaffold1520 GLEAN promoter 4169 5168 0.999818 + . ID=CGI_10000517; scaffold1520 GLEAN mRNA 4694 4879 0.997357 - . ID=CGI_10000516; scaffold1520 GLEAN promoter 4880 5879 0.997357 - . ID=CGI_10000516; scaffold1520 GLEAN mRNA 5169 5836 0.999818 + . ID=CGI_10000517; scaffold1520 GLEAN mRNA 6057 6290 0.998747 - . ID=CGI_10000518; scaffold1520 GLEAN promoter 6291 6454 0.998747 - . ID=CGI_10000518; scaffold1521 WUBlastX DNA_hAT-Tip100 2516 2653 26 + . . scaffold1521 WUBlastX DNA_hAT-Tip100 2965 3507 185 + . . scaffold1521 WUBlastX DNA_hAT-Tip100 3483 4955 661 + . . scaffold1521 WUBlastX DNA_hAT-Tip100 4955 5113 27 + . . scaffold1521 WUBlastX DNA_hAT-Tip100 4955 5080 63 + . . scaffold1521 TRF Tandem_Repeat 9505 9568 80 + . . scaffold1521 TRF Tandem_Repeat 9829 9889 70 + . . scaffold1521 GLEAN promoter 9856 10855 0.761411 + . ID=CGI_10017929; scaffold1521 GLEAN mRNA 10856 20829 0.761411 + . ID=CGI_10017929; scaffold1521 TRF Tandem_Repeat 13218 13251 68 + . . scaffold1521 GLEAN mRNA 23304 29831 0.462565 - . ID=CGI_10017930; scaffold1521 GLEAN promoter 29832 30831 0.462565 - . ID=CGI_10017930; scaffold1521 TRF Tandem_Repeat 30942 30989 96 + . . scaffold1521 TRF Tandem_Repeat 41430 41474 58 + . . scaffold1521 TRF Tandem_Repeat 43087 43123 74 + . . scaffold1521 WUBlastX DNA_TcMar-Tc1 46779 47021 50 + . . scaffold1521 WUBlastX DNA_TcMar-Tc1 46963 47775 276 + . . scaffold1521 WUBlastX DNA_TcMar-Tc1 47137 47763 313 + . . scaffold1521 WUBlastX DNA_Harbinger 50400 50900 117 - . . scaffold1521 TRF Tandem_Repeat 52675 52699 50 + . . scaffold1521 GLEAN promoter 63795 64794 0.54097 + . ID=CGI_10017931; scaffold1521 GLEAN mRNA 64795 90291 0.54097 + . ID=CGI_10017931; scaffold1521 TRF Tandem_Repeat 65510 66590 1526 + . . scaffold1521 TRF Tandem_Repeat 72251 72463 204 + . . scaffold1521 TRF Tandem_Repeat 82712 83496 1115 + . . scaffold1521 TRF Tandem_Repeat 90575 90622 96 + . . scaffold1521 GLEAN mRNA 113733 121454 0.991856 - . ID=CGI_10017932; scaffold1521 GLEAN promoter 121455 122454 0.991856 - . ID=CGI_10017932; scaffold1521 TRF Tandem_Repeat 122587 122656 140 + . . scaffold1521 TRF Tandem_Repeat 122791 122842 104 + . . scaffold1521 WUBlastX LINE_RTE-X 124645 126927 768 - . . scaffold1521 WUBlastX LINE_RTE-X 126878 128053 257 - . . scaffold1521 WUBlastX LINE_CR1 127436 128191 37 - . . scaffold1521 WUBlastX LINE_L1 128168 128440 141 - . . scaffold1521 WUBlastX LINE_L2 128195 128629 84 - . . scaffold1521 WUBlastX LINE_L1-Tx1 128195 128494 125 - . . scaffold1521 TRF Tandem_Repeat 136895 136969 150 + . . scaffold1521 TRF Tandem_Repeat 138164 138208 90 + . . scaffold1521 GLEAN mRNA 139281 143271 0.840333 - . ID=CGI_10017933; scaffold1521 TRF Tandem_Repeat 139529 139565 74 + . . scaffold1521 TRF Tandem_Repeat 140511 140836 197 + . . scaffold1521 TRF Tandem_Repeat 140520 140854 439 + . . scaffold1521 GLEAN promoter 143272 144271 0.840333 - . ID=CGI_10017933; scaffold1521 WUBlastX LINE_L2 146480 146749 86 + . . scaffold1521 WUBlastX LINE_CR1-L2 146528 147295 109 + . . scaffold1521 WUBlastX LINE_CR1-L2 146528 146761 147 + . . scaffold1521 WUBlastX LINE_L2 147083 147295 150 + . . scaffold1521 WUBlastX LINE_L2 147092 147403 42 + . . scaffold1521 TRF Tandem_Repeat 152217 152456 455 + . . scaffold1521 GLEAN mRNA 155608 159979 0.575459 - . ID=CGI_10017934; scaffold1521 GLEAN promoter 159980 160979 0.575459 - . ID=CGI_10017934; scaffold1521 GLEAN mRNA 171907 178322 0.897399 - . ID=CGI_10017935; scaffold1521 TRF Tandem_Repeat 176872 176957 172 + . . scaffold1521 GLEAN promoter 178323 179322 0.897399 - . ID=CGI_10017935; scaffold1521 TRF Tandem_Repeat 185328 185370 59 + . . scaffold1521 TRF Tandem_Repeat 186594 186634 82 + . . scaffold1521 GLEAN mRNA 191795 192376 1 - . ID=CGI_10017936; scaffold1521 GLEAN promoter 191922 192921 0.999668 + . ID=CGI_10017937; scaffold1521 GLEAN promoter 192377 193376 1 - . ID=CGI_10017936; scaffold1521 GLEAN mRNA 192922 210118 0.999668 + . ID=CGI_10017937; scaffold1521 TRF Tandem_Repeat 194735 194860 110 + . . scaffold1521 TRF Tandem_Repeat 198862 198905 88 + . . scaffold1521 TRF Tandem_Repeat 204305 204330 52 + . . scaffold1521 TRF Tandem_Repeat 204495 204520 52 + . . scaffold1521 TRF Tandem_Repeat 206132 206167 72 + . . scaffold1521 GLEAN mRNA 210963 212126 1 - . ID=CGI_10017938; scaffold1521 GLEAN promoter 211318 212317 0.482046 + . ID=CGI_10017939; scaffold1521 GLEAN promoter 212127 213126 1 - . ID=CGI_10017938; scaffold1521 GLEAN mRNA 212318 231130 0.482046 + . ID=CGI_10017939; scaffold1521 WUBlastX DNA_TcMar-Tc1 216817 217437 265 + . . scaffold1521 WUBlastX DNA_TcMar-Tc1 217413 217655 112 + . . scaffold1521 WUBlastX DNA_TcMar-Tc1 217491 217688 90 + . . scaffold1521 WUBlastX DNA_TcMar-Tc1 217494 217652 117 + . . scaffold1521 WUBlastX DNA_TcMar-Tc1 217661 217798 72 + . . scaffold1521 TRF Tandem_Repeat 218583 218643 108 + . . scaffold1521 TRF Tandem_Repeat 229789 229842 67 + . . scaffold1521 TRF Tandem_Repeat 229805 229839 52 + . . scaffold1521 GLEAN mRNA 240137 243599 0.458007 - . ID=CGI_10017940; scaffold1521 GLEAN promoter 243600 244599 0.458007 - . ID=CGI_10017940; scaffold1521 TRF Tandem_Repeat 260606 260658 106 + . . scaffold1521 TRF Tandem_Repeat 264979 265005 54 + . . scaffold1521 GLEAN promoter 266923 267922 1 + . ID=CGI_10017941; scaffold1521 GLEAN mRNA 267923 271403 1 + . ID=CGI_10017941; scaffold1521 TRF Tandem_Repeat 279530 279618 178 + . . scaffold1521 GLEAN mRNA 281960 286715 1 - . ID=CGI_10017942; scaffold1521 GLEAN promoter 286716 287715 1 - . ID=CGI_10017942; scaffold1521 GLEAN promoter 287094 288093 0.99586 + . ID=CGI_10017943; scaffold1521 GLEAN mRNA 288094 301748 0.99586 + . ID=CGI_10017943; scaffold1521 GLEAN mRNA 289698 291938 1 - . ID=CGI_10017944; scaffold1521 GLEAN promoter 291939 292938 1 - . ID=CGI_10017944; scaffold1521 GLEAN mRNA 303673 307273 1 - . ID=CGI_10017945; scaffold1521 GLEAN promoter 307274 308273 1 - . ID=CGI_10017945; scaffold1521 GLEAN mRNA 308645 313905 0.996817 - . ID=CGI_10017946; scaffold1521 TRF Tandem_Repeat 313165 313222 107 + . . scaffold1521 GLEAN promoter 313906 314905 0.996817 - . ID=CGI_10017946; scaffold1521 GLEAN mRNA 315799 319325 0.997396 - . ID=CGI_10017947; scaffold1521 GLEAN promoter 319326 320325 0.997396 - . ID=CGI_10017947; scaffold1521 WUBlastX LINE_Penelope 321000 321095 41 - . . scaffold1521 WUBlastX LINE_Penelope 321624 322082 36 - . . scaffold1521 WUBlastX LINE_Penelope 321765 322049 92 - . . scaffold1521 WUBlastX LINE_Penelope 321849 322088 37 - . . scaffold1521 WUBlastX LINE_Penelope 322115 322198 27 - . . scaffold1521 TRF Tandem_Repeat 324154 324214 122 + . . scaffold1521 WUBlastX LINE_R2-Hero 327707 328615 710 + . . scaffold1521 TRF Tandem_Repeat 335328 335379 77 + . . scaffold1521 TRF Tandem_Repeat 335328 335387 66 + . . scaffold1521 TRF Tandem_Repeat 335329 335375 58 + . . scaffold1521 TRF Tandem_Repeat 335337 335388 50 + . . scaffold1521 WUBlastX LINE_RTE-BovB 335400 335633 51 + . . scaffold1521 WUBlastX LINE_RTE-X 335457 335618 66 + . . scaffold1521 WUBlastX LINE_RTE-BovB 335617 335787 79 + . . scaffold1521 WUBlastX LINE_RTE-BovB 335617 335829 69 + . . scaffold1521 WUBlastX LINE_RTE-X 335823 336257 93 + . . scaffold1521 WUBlastX LINE_RTE-X 336280 336834 60 + . . scaffold1521 WUBlastX LINE_RTE-X 336830 336913 48 + . . scaffold1521 WUBlastX LINE_RTE-X 336848 336931 29 + . . scaffold1521 TRF Tandem_Repeat 343127 343295 134 + . . scaffold1521 TRF Tandem_Repeat 343127 343295 146 + . . scaffold1521 TRF Tandem_Repeat 345953 345986 68 + . . scaffold1521 GLEAN mRNA 345989 352481 0.263392 - . ID=CGI_10017948; scaffold1521 TRF Tandem_Repeat 346800 346971 229 + . . scaffold1521 TRF Tandem_Repeat 350489 350523 70 + . . scaffold1521 TRF Tandem_Repeat 351752 351792 64 + . . scaffold1521 GLEAN promoter 352482 353481 0.263392 - . ID=CGI_10017948; scaffold1521 TRF Tandem_Repeat 353996 354034 78 + . . scaffold1521 GLEAN promoter 364881 365880 1 + . ID=CGI_10017949; scaffold1521 TRF Tandem_Repeat 365740 365783 79 + . . scaffold1521 GLEAN mRNA 365881 369601 1 + . ID=CGI_10017949; scaffold1521 GLEAN mRNA 372821 385047 0.999051 - . ID=CGI_10017950; scaffold1521 TRF Tandem_Repeat 384366 384443 142 + . . scaffold1521 GLEAN promoter 385048 386047 0.999051 - . ID=CGI_10017950; scaffold1521 TRF Tandem_Repeat 385583 385619 74 + . . scaffold1521 GLEAN mRNA 403731 404431 0.999676 - . ID=CGI_10017951; scaffold1521 GLEAN promoter 404432 405431 0.999676 - . ID=CGI_10017951; scaffold1521 GLEAN mRNA 405875 406826 0.557846 - . ID=CGI_10017952; scaffold1521 GLEAN promoter 406827 407826 0.557846 - . ID=CGI_10017952; scaffold1521 GLEAN mRNA 410332 414216 0.378134 - . ID=CGI_10017953; scaffold1521 GLEAN promoter 414217 415216 0.378134 - . ID=CGI_10017953; scaffold1521 WUBlastX LINE_RTE-X 415233 415826 164 + . . scaffold1521 GLEAN promoter 416324 417323 1 + . ID=CGI_10017954; scaffold1521 GLEAN mRNA 417324 428003 1 + . ID=CGI_10017954; scaffold1521 TRF Tandem_Repeat 431043 431090 96 + . . scaffold1521 TRF Tandem_Repeat 431373 431450 156 + . . scaffold1521 GLEAN mRNA 438351 452783 0.99909 - . ID=CGI_10017955; scaffold1521 TRF Tandem_Repeat 441397 441478 101 + . . scaffold1521 TRF Tandem_Repeat 443688 443790 188 + . . scaffold1521 GLEAN promoter 452784 453783 0.99909 - . ID=CGI_10017955; scaffold1521 TRF Tandem_Repeat 455637 455670 68 + . . scaffold1521 TRF Tandem_Repeat 461331 461378 96 + . . scaffold1521 TRF Tandem_Repeat 461399 461464 132 + . . scaffold1521 GLEAN mRNA 461540 463090 1 - . ID=CGI_10017956; scaffold1521 GLEAN promoter 463091 464090 1 - . ID=CGI_10017956; scaffold1521 TRF Tandem_Repeat 465576 465641 132 + . . scaffold1521 GLEAN mRNA 465717 467767 0.999999 - . ID=CGI_10017957; scaffold1521 GLEAN promoter 467391 468390 1 + . ID=CGI_10017958; scaffold1521 GLEAN promoter 467768 468767 0.999999 - . ID=CGI_10017957; scaffold1521 GLEAN mRNA 468391 472426 1 + . ID=CGI_10017958; scaffold1521 GLEAN mRNA 475145 480493 0.917827 - . ID=CGI_10017959; scaffold1521 TRF Tandem_Repeat 476015 476047 66 + . . scaffold1521 GLEAN promoter 480494 481493 0.917827 - . ID=CGI_10017959; scaffold1521 WUBlastX DNA_TcMar-Tc1 497459 497866 171 - . . scaffold1521 WUBlastX DNA_TcMar-Tc1 497958 498155 25 - . . scaffold1521 WUBlastX DNA_TcMar-Tc1 497988 498155 46 - . . scaffold1521 TRF Tandem_Repeat 501871 501909 78 + . . scaffold1521 TRF Tandem_Repeat 509201 509232 64 + . . scaffold1521 TRF Tandem_Repeat 509810 509843 68 + . . scaffold1521 GLEAN promoter 517592 518591 0.544852 + . ID=CGI_10017960; scaffold1521 GLEAN mRNA 518592 523647 0.544852 + . ID=CGI_10017960; scaffold1521 TRF Tandem_Repeat 519075 519110 56 + . . scaffold1521 TRF Tandem_Repeat 519642 519680 69 + . . scaffold1521 TRF Tandem_Repeat 521800 521830 62 + . . scaffold1521 TRF Tandem_Repeat 523873 523911 69 + . . scaffold1521 TRF Tandem_Repeat 524563 524610 60 + . . scaffold1521 GLEAN mRNA 525992 528972 1 - . ID=CGI_10017961; scaffold1521 GLEAN promoter 528973 529040 1 - . ID=CGI_10017961; scaffold1522 GLEAN promoter 84662 85661 1 + . ID=CGI_10005596; scaffold1522 GLEAN mRNA 85662 92441 1 + . ID=CGI_10005596; scaffold1522 GLEAN mRNA 96410 100746 1 - . ID=CGI_10005597; scaffold1522 GLEAN promoter 100747 101746 1 - . ID=CGI_10005597; scaffold1522 GLEAN promoter 100989 101988 0.754735 + . ID=CGI_10005598; scaffold1522 GLEAN mRNA 101989 106158 0.754735 + . ID=CGI_10005598; scaffold1522 GLEAN promoter 114657 115656 0.749146 + . ID=CGI_10005599; scaffold1522 GLEAN mRNA 115657 117327 0.749146 + . ID=CGI_10005599; scaffold1522 GLEAN promoter 119426 120425 0.999611 + . ID=CGI_10005600; scaffold1522 GLEAN mRNA 120426 128869 0.999611 + . ID=CGI_10005600; scaffold1523 WUBlastX LTR_Copia 2269 3372 123 - . . scaffold1524 GLEAN mRNA 7 1937 1 - . ID=CGI_10007396; scaffold1524 GLEAN promoter 1938 2937 1 - . ID=CGI_10007396; scaffold1524 GLEAN promoter 3560 4559 0.911813 + . ID=CGI_10007397; scaffold1524 TRF Tandem_Repeat 4229 4269 82 + . . scaffold1524 GLEAN mRNA 4560 8338 0.911813 + . ID=CGI_10007397; scaffold1524 GLEAN mRNA 12671 20701 0.999676 - . ID=CGI_10007398; scaffold1524 GLEAN promoter 18135 19134 0.999221 + . ID=CGI_10007399; scaffold1524 GLEAN mRNA 19135 30496 0.999221 + . ID=CGI_10007399; scaffold1524 GLEAN promoter 20702 21701 0.999676 - . ID=CGI_10007398; scaffold1524 GLEAN mRNA 35542 49700 1 - . ID=CGI_10007400; scaffold1524 GLEAN promoter 49701 50700 1 - . ID=CGI_10007400; scaffold1524 GLEAN promoter 56620 57619 0.999999 + . ID=CGI_10007401; scaffold1524 TRF Tandem_Repeat 57499 57548 100 + . . scaffold1524 GLEAN mRNA 57620 88338 0.999999 + . ID=CGI_10007401; scaffold1524 TRF Tandem_Repeat 66549 66590 75 + . . scaffold1524 TRF Tandem_Repeat 89897 89946 100 + . . scaffold1524 TRF Tandem_Repeat 102547 102614 136 + . . scaffold1524 TRF Tandem_Repeat 103821 103925 92 + . . scaffold1524 TRF Tandem_Repeat 105086 105190 105 + . . scaffold1524 GLEAN promoter 109364 110363 0.541528 + . ID=CGI_10007402; scaffold1524 GLEAN mRNA 110364 112092 0.541528 + . ID=CGI_10007402; scaffold1524 GLEAN mRNA 126406 129730 0.999676 - . ID=CGI_10007403; scaffold1524 GLEAN promoter 129731 130730 0.999676 - . ID=CGI_10007403; scaffold1524 GLEAN promoter 137050 138049 0.994155 + . ID=CGI_10007404; scaffold1524 GLEAN mRNA 138050 143263 0.994155 + . ID=CGI_10007404; scaffold1524 GLEAN promoter 155067 156066 0.729448 + . ID=CGI_10007405; scaffold1524 GLEAN mRNA 156067 174337 0.729448 + . ID=CGI_10007405; scaffold1524 WUBlastX LINE_L2 174837 175109 106 - . . scaffold1524 WUBlastX LINE_L2 174840 175199 86 - . . scaffold1524 WUBlastX LINE_L2 175144 175365 54 - . . scaffold1524 WUBlastX DNA_Kolobok 179851 180009 51 + . . scaffold1525 TRF Tandem_Repeat 10202 10246 90 + . . scaffold1525 TRF Tandem_Repeat 15047 15098 104 + . . scaffold1525 GLEAN promoter 21768 22767 0.21079 + . ID=CGI_10013853; scaffold1525 GLEAN mRNA 22768 58796 0.21079 + . ID=CGI_10013853; scaffold1525 TRF Tandem_Repeat 29601 29647 69 + . . scaffold1525 WUBlastX LINE_L2 39140 39208 21 + . . scaffold1525 WUBlastX LINE_L1-Tx1 39852 40067 39 + . . scaffold1525 WUBlastX LINE_L1 39929 40654 145 + . . scaffold1525 WUBlastX LINE_L1-Tx1 40070 40690 389 + . . scaffold1525 WUBlastX LINE_L1-Tx1 40692 41075 232 + . . scaffold1525 WUBlastX LINE_L1-Tx1 40701 41153 128 + . . scaffold1525 WUBlastX LINE_L1-Tx1 41165 41992 162 + . . scaffold1525 WUBlastX LINE_L1 42019 42144 23 + . . scaffold1525 TRF Tandem_Repeat 42155 42221 134 + . . scaffold1525 TRF Tandem_Repeat 46466 46643 80 + . . scaffold1525 TRF Tandem_Repeat 47700 47730 53 + . . scaffold1525 TRF Tandem_Repeat 48682 48854 70 + . . scaffold1525 WUBlastX LINE_Penelope 56222 57349 513 + . . scaffold1525 TRF Tandem_Repeat 67367 67507 102 + . . scaffold1525 GLEAN promoter 72438 73437 0.443007 + . ID=CGI_10013854; scaffold1525 GLEAN mRNA 73438 101601 0.443007 + . ID=CGI_10013854; scaffold1525 TRF Tandem_Repeat 74702 74769 86 + . . scaffold1525 TRF Tandem_Repeat 82122 82146 50 + . . scaffold1525 TRF Tandem_Repeat 98775 98819 90 + . . scaffold1525 TRF Tandem_Repeat 99173 99208 72 + . . scaffold1525 TRF Tandem_Repeat 99876 99992 144 + . . scaffold1525 TRF Tandem_Repeat 100274 100346 146 + . . scaffold1525 TRF Tandem_Repeat 107016 107077 124 + . . scaffold1525 TRF Tandem_Repeat 110263 110335 137 + . . scaffold1525 TRF Tandem_Repeat 110666 110737 135 + . . scaffold1525 WUBlastX DNA_Kolobok 111869 112573 97 - . . scaffold1525 GLEAN promoter 113454 114453 0.998088 + . ID=CGI_10013855; scaffold1525 GLEAN mRNA 114454 119496 0.998088 + . ID=CGI_10013855; scaffold1525 TRF Tandem_Repeat 121244 121291 71 + . . scaffold1525 WUBlastX LINE_Penelope 122995 123780 177 - . . scaffold1525 TRF Tandem_Repeat 127850 127934 170 + . . scaffold1525 TRF Tandem_Repeat 127932 128010 140 + . . scaffold1525 GLEAN promoter 132642 133641 1 + . ID=CGI_10013856; scaffold1525 GLEAN mRNA 133642 136804 1 + . ID=CGI_10013856; scaffold1525 WUBlastX LTR_Pao 142435 143406 102 + . . scaffold1525 WUBlastX LTR_Pao 142972 143403 115 + . . scaffold1525 GLEAN promoter 148711 149710 0.999997 + . ID=CGI_10013857; scaffold1525 GLEAN mRNA 149711 150797 0.999997 + . ID=CGI_10013857; scaffold1525 GLEAN promoter 154669 155668 0.839835 + . ID=CGI_10013858; scaffold1525 GLEAN mRNA 155669 173658 0.839835 + . ID=CGI_10013858; scaffold1525 TRF Tandem_Repeat 155910 155945 54 + . . scaffold1525 TRF Tandem_Repeat 156054 156098 90 + . . scaffold1525 GLEAN mRNA 157769 166360 0.583688 - . ID=CGI_10013859; scaffold1525 TRF Tandem_Repeat 165544 165685 128 + . . scaffold1525 GLEAN promoter 166361 167360 0.583688 - . ID=CGI_10013859; scaffold1525 GLEAN promoter 177082 178081 1 + . ID=CGI_10013860; scaffold1525 GLEAN mRNA 178082 184327 1 + . ID=CGI_10013860; scaffold1525 TRF Tandem_Repeat 185557 185610 67 + . . scaffold1525 TRF Tandem_Repeat 185562 185607 67 + . . scaffold1525 GLEAN mRNA 186745 196886 0.9993 - . ID=CGI_10013861; scaffold1525 GLEAN promoter 196887 197886 0.9993 - . ID=CGI_10013861; scaffold1525 TRF Tandem_Repeat 201540 201582 86 + . . scaffold1525 GLEAN mRNA 209524 214538 0.840208 - . ID=CGI_10013862; scaffold1525 TRF Tandem_Repeat 210343 210368 52 + . . scaffold1525 GLEAN promoter 214539 215538 0.840208 - . ID=CGI_10013862; scaffold1525 GLEAN mRNA 218006 218932 0.836246 - . ID=CGI_10013863; scaffold1525 GLEAN promoter 218933 219932 0.836246 - . ID=CGI_10013863; scaffold1525 TRF Tandem_Repeat 219488 219518 55 + . . scaffold1525 WUBlastX DNA_Harbinger 220617 220979 170 + . . scaffold1525 WUBlastX DNA_hAT-hATw 224231 224482 67 - . . scaffold1525 GLEAN mRNA 230203 231272 0.866333 - . ID=CGI_10013864; scaffold1525 WUBlastX DNA_Kolobok 230221 230433 69 - . . scaffold1525 GLEAN promoter 231273 232272 0.866333 - . ID=CGI_10013864; scaffold1525 WUBlastX DNA_Kolobok 236159 236515 73 + . . scaffold1525 WUBlastX DNA_Kolobok 236234 236515 89 + . . scaffold1525 WUBlastX DNA_Kolobok 236901 237125 84 + . . scaffold1525 WUBlastX DNA_Kolobok 237941 238159 94 + . . scaffold1525 WUBlastX DNA_Kolobok 238982 239224 87 + . . scaffold1525 WUBlastX DNA_Kolobok 239811 239951 89 - . . scaffold1525 WUBlastX DNA_Kolobok 239811 240002 85 - . . scaffold1525 WUBlastX LINE_RTE-X 243798 244352 236 + . . scaffold1525 WUBlastX LINE_RTE-X 243798 244466 177 + . . scaffold1525 WUBlastX LINE_RTE-X 244357 244494 31 + . . scaffold1525 WUBlastX LTR_Gypsy 251278 251409 58 + . . scaffold1525 WUBlastX LTR_Gypsy 251409 251558 51 + . . scaffold1525 WUBlastX DNA_Maverick 253414 253734 115 + . . scaffold1525 WUBlastX DNA_Maverick 253737 253838 46 + . . scaffold1525 WUBlastX DNA_IS4EU 270440 270940 149 + . . scaffold1525 WUBlastX DNA_IS4EU 271634 271921 170 - . . scaffold1525 WUBlastX DNA_IS4EU 271920 272192 261 - . . scaffold1525 WUBlastX DNA_IS4EU 272171 273181 219 - . . scaffold1525 WUBlastX DNA_IS4EU 272186 272779 344 - . . scaffold1525 WUBlastX DNA_IS4EU 273617 273805 105 - . . scaffold1525 WUBlastX LTR_Gypsy 274344 274655 32 + . . scaffold1525 TRF Tandem_Repeat 274437 274461 50 + . . scaffold1525 WUBlastX LTR_Gypsy 274470 274610 37 + . . scaffold1525 WUBlastX LTR_Gypsy 274652 274834 66 + . . scaffold1525 WUBlastX LTR_Gypsy 274655 274786 100 + . . scaffold1525 WUBlastX LTR_Gypsy 274789 275496 49 + . . scaffold1525 WUBlastX LTR_Gypsy-Cigr 274792 275169 53 + . . scaffold1525 WUBlastX LTR_Gypsy 275497 275583 28 + . . scaffold1525 GLEAN mRNA 276942 293191 0.993853 - . ID=CGI_10013865; scaffold1525 WUBlastX LTR_Pao 277125 277355 39 - . . scaffold1525 WUBlastX DNA_En-Spm 282633 282938 163 - . . scaffold1525 WUBlastX DNA_En-Spm 282937 283011 27 - . . scaffold1525 TRF Tandem_Repeat 284350 284389 53 + . . scaffold1525 TRF Tandem_Repeat 284353 284389 65 + . . scaffold1525 GLEAN promoter 293192 294191 0.993853 - . ID=CGI_10013865; scaffold1525 GLEAN mRNA 297164 297628 0.617912 - . ID=CGI_10013866; scaffold1525 GLEAN promoter 297629 298628 0.617912 - . ID=CGI_10013866; scaffold1525 WUBlastX DNA_En-Spm 300003 300380 21 + . . scaffold1525 WUBlastX DNA_En-Spm 300126 300407 90 + . . scaffold1525 GLEAN promoter 302148 303147 0.996685 + . ID=CGI_10013867; scaffold1525 GLEAN mRNA 303148 307540 0.996685 + . ID=CGI_10013867; scaffold1525 GLEAN mRNA 308250 308624 0.998915 - . ID=CGI_10013868; scaffold1525 GLEAN promoter 308625 309624 0.998915 - . ID=CGI_10013868; scaffold1525 TRF Tandem_Repeat 310049 310078 53 + . . scaffold1525 WUBlastX LTR_Pao 312931 313038 32 + . . scaffold1525 WUBlastX LTR_Pao 312982 313341 110 + . . scaffold1525 WUBlastX LTR_Pao 313244 314209 771 + . . scaffold1525 WUBlastX LTR_Pao 314012 314257 77 + . . scaffold1525 WUBlastX LTR_Pao 314682 314879 36 + . . scaffold1525 WUBlastX LTR_Pao 314847 314906 23 + . . scaffold1525 WUBlastX LTR_Pao 315023 315124 24 + . . scaffold1525 TRF Tandem_Repeat 338548 338654 142 + . . scaffold1525 TRF Tandem_Repeat 339214 339252 69 + . . scaffold1525 TRF Tandem_Repeat 339263 340266 1431 + . . scaffold1525 TRF Tandem_Repeat 344579 344613 70 + . . scaffold1525 GLEAN mRNA 345189 363927 0.815102 - . ID=CGI_10013870; scaffold1525 WUBlastX LTR_Ngaro 354539 355093 30 + . . scaffold1525 WUBlastX LTR_Ngaro 354803 355078 47 + . . scaffold1525 WUBlastX LTR_Ngaro 354863 355090 69 + . . scaffold1525 WUBlastX LTR_Ngaro 355098 355502 95 + . . scaffold1525 WUBlastX LTR_Ngaro 355480 357045 932 + . . scaffold1525 WUBlastX LTR_Ngaro 357086 357928 75 + . . scaffold1525 WUBlastX LTR_Ngaro 357248 357952 218 + . . scaffold1525 GLEAN promoter 363928 364927 0.815102 - . ID=CGI_10013870; scaffold1525 GLEAN promoter 364334 365333 0.997965 + . ID=CGI_10013871; scaffold1525 GLEAN promoter 364674 365673 0.984669 + . ID=CGI_10013872; scaffold1525 GLEAN mRNA 365334 365540 0.997965 + . ID=CGI_10013871; scaffold1525 GLEAN mRNA 365674 366123 0.984669 + . ID=CGI_10013872; scaffold1525 WUBlastX LTR_Ngaro 366664 367353 64 + . . scaffold1525 WUBlastX LTR_Ngaro 366691 367143 96 + . . scaffold1525 WUBlastX LTR_Pao 369982 370149 64 - . . scaffold1525 WUBlastX LTR_Gypsy 370021 371232 249 - . . scaffold1525 WUBlastX LTR_Gypsy 370231 371232 648 - . . scaffold1526 GLEAN promoter 29649 30648 0.993907 + . ID=CGI_10006180; scaffold1526 GLEAN mRNA 30649 39123 0.993907 + . ID=CGI_10006180; scaffold1526 GLEAN mRNA 32659 41312 0.996884 - . ID=CGI_10006181; scaffold1526 TRF Tandem_Repeat 33098 33133 54 + . . scaffold1526 GLEAN promoter 40726 41725 0.919139 + . ID=CGI_10006182; scaffold1526 GLEAN promoter 41313 42312 0.996884 - . ID=CGI_10006181; scaffold1526 GLEAN mRNA 41726 44983 0.919139 + . ID=CGI_10006182; scaffold1526 GLEAN mRNA 50792 52861 0.999989 - . ID=CGI_10006183; scaffold1526 TRF Tandem_Repeat 51630 51666 56 + . . scaffold1526 TRF Tandem_Repeat 51666 51693 56 + . . scaffold1526 GLEAN promoter 52311 53310 0.999882 + . ID=CGI_10006184; scaffold1526 TRF Tandem_Repeat 52395 52554 248 + . . scaffold1526 GLEAN promoter 52862 53861 0.999989 - . ID=CGI_10006183; scaffold1526 GLEAN mRNA 53311 58452 0.999882 + . ID=CGI_10006184; scaffold1526 GLEAN mRNA 55959 73285 0.514346 - . ID=CGI_10006185; scaffold1526 TRF Tandem_Repeat 58942 59087 274 + . . scaffold1526 TRF Tandem_Repeat 60172 60218 94 + . . scaffold1526 TRF Tandem_Repeat 71869 71923 110 + . . scaffold1526 GLEAN promoter 72448 73447 0.991676 + . ID=CGI_10006186; scaffold1526 GLEAN promoter 73286 74285 0.514346 - . ID=CGI_10006185; scaffold1526 GLEAN mRNA 73448 82393 0.991676 + . ID=CGI_10006186; scaffold1526 TRF Tandem_Repeat 75293 75325 66 + . . scaffold1526 GLEAN mRNA 83330 93705 0.632332 - . ID=CGI_10006187; scaffold1526 TRF Tandem_Repeat 87180 87317 175 + . . scaffold1526 WUBlastX DNA_TcMar-Tc2 88175 89098 436 - . . scaffold1526 WUBlastX DNA_TcMar-Tc2 89085 89255 52 - . . scaffold1526 GLEAN promoter 93706 94705 0.632332 - . ID=CGI_10006187; scaffold1526 GLEAN mRNA 94443 99453 0.999507 - . ID=CGI_10006188; scaffold1526 GLEAN promoter 99454 100453 0.999507 - . ID=CGI_10006188; scaffold1526 TRF Tandem_Repeat 105222 105260 78 + . . scaffold1526 TRF Tandem_Repeat 116272 116302 62 + . . scaffold1526 WUBlastX LTR_Pao 123466 124740 417 - . . scaffold1526 WUBlastX LTR_Pao 123466 125202 382 - . . scaffold1526 GLEAN promoter 126883 127882 0.558407 + . ID=CGI_10006189; scaffold1526 GLEAN mRNA 127883 143030 0.558407 + . ID=CGI_10006189; scaffold1527 TRF Tandem_Repeat 4628 4710 166 + . . scaffold1527 WUBlastX LINE_RTE-X 18581 18781 21 - . . scaffold1527 WUBlastX LINE_RTE-X 18587 18679 23 - . . scaffold1527 WUBlastX LINE_RTE-X 19045 19308 69 - . . scaffold1527 WUBlastX LINE_RTE-BovB 19547 19609 21 - . . scaffold1527 TRF Tandem_Repeat 27601 27719 83 + . . scaffold1527 TRF Tandem_Repeat 27602 27715 99 + . . scaffold1527 TRF Tandem_Repeat 27606 27719 52 + . . scaffold1527 WUBlastX LTR_Gypsy 32372 32455 39 - . . scaffold1527 WUBlastX LTR_Gypsy 32468 33091 354 - . . scaffold1527 WUBlastX LTR_Gypsy 33075 34598 1468 - . . scaffold1527 WUBlastX LTR_Gypsy 34535 36280 1290 - . . scaffold1527 WUBlastX LTR_Gypsy 36288 36503 134 - . . scaffold1527 GLEAN promoter 40226 41225 0.9996 + . ID=CGI_10011613; scaffold1527 GLEAN mRNA 41226 44889 0.9996 + . ID=CGI_10011613; scaffold1527 TRF Tandem_Repeat 58786 58853 64 + . . scaffold1527 TRF Tandem_Repeat 58786 58845 84 + . . scaffold1527 TRF Tandem_Repeat 58795 58854 75 + . . scaffold1527 WUBlastX LTR_DIRS? 60833 61492 421 - . . scaffold1527 WUBlastX LTR_DIRS 61489 61788 153 - . . scaffold1527 WUBlastX LINE_RTE-X 63347 64360 218 + . . scaffold1527 WUBlastX LINE_RTE-X 87633 87734 23 - . . scaffold1527 WUBlastX LINE_RTE-X 87657 88613 103 - . . scaffold1527 WUBlastX LINE_RTE-X 88257 88613 130 - . . scaffold1527 TRF Tandem_Repeat 95867 96530 795 + . . scaffold1527 TRF Tandem_Repeat 104610 105313 1074 + . . scaffold1527 TRF Tandem_Repeat 109114 109849 1091 + . . scaffold1527 TRF Tandem_Repeat 113994 114039 92 + . . scaffold1527 TRF Tandem_Repeat 122918 123042 93 + . . scaffold1527 TRF Tandem_Repeat 122919 123043 118 + . . scaffold1527 TRF Tandem_Repeat 134878 135097 327 + . . scaffold1527 WUBlastX LINE_Penelope 138022 138267 68 - . . scaffold1527 TRF Tandem_Repeat 139308 139367 111 + . . scaffold1527 TRF Tandem_Repeat 141228 141546 476 + . . scaffold1527 GLEAN mRNA 146177 161631 0.77016 - . ID=CGI_10011614; scaffold1527 TRF Tandem_Repeat 159521 159803 204 + . . scaffold1527 TRF Tandem_Repeat 159818 160345 643 + . . scaffold1527 GLEAN promoter 161632 162631 0.77016 - . ID=CGI_10011614; scaffold1527 TRF Tandem_Repeat 161911 162777 1360 + . . scaffold1527 TRF Tandem_Repeat 168842 168892 102 + . . scaffold1527 TRF Tandem_Repeat 170837 172320 825 + . . scaffold1527 TRF Tandem_Repeat 170935 171989 713 + . . scaffold1527 TRF Tandem_Repeat 171753 171888 92 + . . scaffold1527 WUBlastX LINE_RTE-X 176128 176265 30 - . . scaffold1527 WUBlastX LINE_RTE-X 176173 176262 39 - . . scaffold1527 WUBlastX LINE_RTE-BovB 176267 176368 58 - . . scaffold1527 WUBlastX LINE_RTE-X 176270 176413 41 - . . scaffold1527 WUBlastX LINE_RTE-X 176403 176699 160 - . . scaffold1527 WUBlastX LINE_L2 178786 178887 27 - . . scaffold1527 WUBlastX LINE_L2 178986 179393 64 - . . scaffold1527 WUBlastX LINE_RTE-BovB 179049 179393 92 - . . scaffold1527 WUBlastX LINE_RTE-X 179142 179459 167 - . . scaffold1527 WUBlastX LINE_RTE-X 179411 179623 93 - . . scaffold1527 WUBlastX LINE_L1 179602 179853 58 - . . scaffold1527 WUBlastX LINE_L1-Tx1 179617 179814 74 - . . scaffold1527 WUBlastX LINE_L2 179626 179937 29 - . . scaffold1527 WUBlastX LINE_RTE-X 179906 180490 55 + . . scaffold1527 WUBlastX LINE_RTE-X 179942 180367 80 + . . scaffold1527 WUBlastX LINE_RTE-X 180140 180430 61 + . . scaffold1527 WUBlastX LINE_Penelope 190804 191028 70 - . . scaffold1527 WUBlastX LINE_Penelope 190816 191091 59 - . . scaffold1527 TRF Tandem_Repeat 197626 197893 175 + . . scaffold1527 TRF Tandem_Repeat 197677 197893 163 + . . scaffold1527 TRF Tandem_Repeat 198470 198646 82 + . . scaffold1527 GLEAN promoter 199043 200042 0.507326 + . ID=CGI_10011615; scaffold1527 GLEAN mRNA 200043 223817 0.507326 + . ID=CGI_10011615; scaffold1527 GLEAN promoter 222864 223863 1 + . ID=CGI_10011616; scaffold1527 GLEAN mRNA 223864 225310 1 + . ID=CGI_10011616; scaffold1527 TRF Tandem_Repeat 226147 226232 172 + . . scaffold1527 GLEAN promoter 230627 231626 1 + . ID=CGI_10011617; scaffold1527 GLEAN mRNA 231627 237140 1 + . ID=CGI_10011617; scaffold1527 GLEAN promoter 247551 248550 0.999999 + . ID=CGI_10011618; scaffold1527 GLEAN mRNA 248551 254506 0.999999 + . ID=CGI_10011618; scaffold1527 GLEAN mRNA 254669 260688 0.999766 - . ID=CGI_10011619; scaffold1527 GLEAN promoter 260689 261688 0.999766 - . ID=CGI_10011619; scaffold1527 TRF Tandem_Repeat 266768 266826 109 + . . scaffold1527 TRF Tandem_Repeat 267596 267720 209 + . . scaffold1527 TRF Tandem_Repeat 267981 268031 57 + . . scaffold1527 TRF Tandem_Repeat 270411 270475 69 + . . scaffold1527 TRF Tandem_Repeat 270506 270556 77 + . . scaffold1527 TRF Tandem_Repeat 270919 270953 61 + . . scaffold1527 GLEAN promoter 274606 275605 0.457501 + . ID=CGI_10011620; scaffold1527 GLEAN mRNA 275606 282971 0.457501 + . ID=CGI_10011620; scaffold1527 TRF Tandem_Repeat 285821 285878 59 + . . scaffold1527 GLEAN promoter 293995 294994 1 + . ID=CGI_10011621; scaffold1527 GLEAN mRNA 294995 295954 1 + . ID=CGI_10011621; scaffold1528 GLEAN promoter 4907 5906 0.999668 + . ID=CGI_10013210; scaffold1528 GLEAN mRNA 5907 7872 0.999668 + . ID=CGI_10013210; scaffold1528 WUBlastX LINE_L2 9966 10172 40 - . . scaffold1528 WUBlastX LINE_L2 10147 10434 45 - . . scaffold1528 WUBlastX LINE_L2 26199 26357 20 - . . scaffold1528 WUBlastX LINE_CR1-L2 26754 26933 60 - . . scaffold1528 WUBlastX LINE_CR1-L2 26927 27001 48 - . . scaffold1528 WUBlastX LINE_RTE-BovB 29322 29615 73 - . . scaffold1528 WUBlastX LINE_RTE-BovB 29608 29733 45 - . . scaffold1528 GLEAN promoter 33593 34592 1 + . ID=CGI_10013211; scaffold1528 GLEAN mRNA 34593 35578 1 + . ID=CGI_10013211; scaffold1528 GLEAN mRNA 36206 41053 1 - . ID=CGI_10013212; scaffold1528 WUBlastX LINE_RTE-X 40326 40511 53 - . . scaffold1528 TRF Tandem_Repeat 40556 40626 133 + . . scaffold1528 GLEAN promoter 41054 42053 1 - . ID=CGI_10013212; scaffold1528 GLEAN promoter 43212 44211 1 + . ID=CGI_10013213; scaffold1528 GLEAN mRNA 44212 45576 1 + . ID=CGI_10013213; scaffold1528 GLEAN promoter 45356 46355 0.997673 + . ID=CGI_10013214; scaffold1528 GLEAN mRNA 46356 49243 0.997673 + . ID=CGI_10013214; scaffold1528 GLEAN mRNA 49605 54829 1 - . ID=CGI_10013215; scaffold1528 GLEAN promoter 54830 55829 1 - . ID=CGI_10013215; scaffold1528 TRF Tandem_Repeat 60790 60950 304 + . . scaffold1528 TRF Tandem_Repeat 65872 65933 124 + . . scaffold1528 TRF Tandem_Repeat 80170 80226 114 + . . scaffold1528 TRF Tandem_Repeat 97884 97920 65 + . . scaffold1528 TRF Tandem_Repeat 109351 109419 138 + . . scaffold1528 GLEAN mRNA 114248 114457 1 - . ID=CGI_10013216; scaffold1528 GLEAN promoter 114458 115457 1 - . ID=CGI_10013216; scaffold1528 GLEAN mRNA 114956 131854 0.865798 - . ID=CGI_10013217; scaffold1528 GLEAN promoter 131855 132854 0.865798 - . ID=CGI_10013217; scaffold1528 TRF Tandem_Repeat 139390 139424 70 + . . scaffold1528 TRF Tandem_Repeat 150067 150111 90 + . . scaffold1528 TRF Tandem_Repeat 150496 150821 338 + . . scaffold1528 TRF Tandem_Repeat 155729 155793 130 + . . scaffold1528 GLEAN promoter 156470 157469 0.520377 + . ID=CGI_10013219; scaffold1528 GLEAN mRNA 157470 159173 0.520377 + . ID=CGI_10013219; scaffold1528 TRF Tandem_Repeat 162880 162924 83 + . . scaffold1528 TRF Tandem_Repeat 164975 165044 126 + . . scaffold1528 GLEAN mRNA 166736 185006 0.35575 - . ID=CGI_10013220; scaffold1528 TRF Tandem_Repeat 169337 169375 78 + . . scaffold1528 TRF Tandem_Repeat 171689 171793 167 + . . scaffold1528 GLEAN promoter 185007 186006 0.35575 - . ID=CGI_10013220; scaffold1528 TRF Tandem_Repeat 185196 186530 1149 + . . scaffold1528 TRF Tandem_Repeat 185196 186548 979 + . . scaffold1528 TRF Tandem_Repeat 185207 186548 1153 + . . scaffold1528 TRF Tandem_Repeat 187745 189335 1310 + . . scaffold1528 GLEAN promoter 190526 191525 1 + . ID=CGI_10013221; scaffold1528 GLEAN mRNA 191526 195874 1 + . ID=CGI_10013221; scaffold1528 GLEAN promoter 196048 197047 0.499919 + . ID=CGI_10013223; scaffold1528 GLEAN mRNA 196951 204992 1 - . ID=CGI_10013222; scaffold1528 GLEAN mRNA 197048 213530 0.499919 + . ID=CGI_10013223; scaffold1528 TRF Tandem_Repeat 197767 197844 52 + . . scaffold1528 TRF Tandem_Repeat 198707 199468 1020 + . . scaffold1528 TRF Tandem_Repeat 199585 199610 52 + . . scaffold1528 TRF Tandem_Repeat 200972 201034 126 + . . scaffold1528 GLEAN promoter 204993 205992 1 - . ID=CGI_10013222; scaffold1528 GLEAN promoter 213694 214693 0.997473 + . ID=CGI_10013224; scaffold1528 GLEAN mRNA 214694 217315 0.997473 + . ID=CGI_10013224; scaffold1528 TRF Tandem_Repeat 215413 216008 280 + . . scaffold1528 TRF Tandem_Repeat 215413 215815 213 + . . scaffold1528 TRF Tandem_Repeat 215730 215972 292 + . . scaffold1528 TRF Tandem_Repeat 226844 226919 71 + . . scaffold1528 TRF Tandem_Repeat 226844 226919 71 + . . scaffold1528 WUBlastX LINE_RTE-X 227286 227561 56 + . . scaffold1528 WUBlastX LINE_RTE-X 227531 227737 76 + . . scaffold1528 WUBlastX LINE_RTE-X 227731 227832 26 + . . scaffold1528 WUBlastX LINE_RTE-X 227767 227832 30 + . . scaffold1528 WUBlastX LINE_RTE-X 230303 230617 23 + . . scaffold1528 TRF Tandem_Repeat 234834 234884 50 + . . scaffold1528 TRF Tandem_Repeat 234841 234884 54 + . . scaffold1528 WUBlastX LINE_RTE-X 234929 235393 114 - . . scaffold1528 TRF Tandem_Repeat 235397 236356 1313 + . . scaffold1528 GLEAN mRNA 237804 245056 0.999675 - . ID=CGI_10013225; scaffold1528 TRF Tandem_Repeat 242218 242254 74 + . . scaffold1528 TRF Tandem_Repeat 244676 244727 104 + . . scaffold1528 GLEAN promoter 245057 246056 0.999675 - . ID=CGI_10013225; scaffold1528 WUBlastX DNA_TcMar-Tc1 249948 250487 140 + . . scaffold1528 WUBlastX DNA_TcMar-Tc1 250453 250821 26 + . . scaffold1528 WUBlastX DNA_TcMar-Tc1 250453 250734 39 + . . scaffold1528 WUBlastX DNA_TcMar-Tc1 250453 250647 84 + . . scaffold1528 WUBlastX LINE_L2 253355 254548 93 + . . scaffold1528 WUBlastX LINE_RTE-X 253535 255220 759 + . . scaffold1528 TRF Tandem_Repeat 255645 255691 94 + . . scaffold1528 TRF Tandem_Repeat 256665 256698 68 + . . scaffold1528 GLEAN mRNA 257542 262832 0.969644 - . ID=CGI_10013226; scaffold1528 GLEAN promoter 262833 263832 0.969644 - . ID=CGI_10013226; scaffold1528 TRF Tandem_Repeat 266503 266555 90 + . . scaffold1528 GLEAN promoter 267004 268003 0.91002 + . ID=CGI_10013227; scaffold1528 TRF Tandem_Repeat 267687 267745 118 + . . scaffold1528 GLEAN mRNA 268004 277753 0.91002 + . ID=CGI_10013227; scaffold1528 TRF Tandem_Repeat 272955 272986 64 + . . scaffold1528 GLEAN promoter 278511 279510 0.999103 + . ID=CGI_10013228; scaffold1528 GLEAN mRNA 279511 286973 0.999103 + . ID=CGI_10013228; scaffold1528 TRF Tandem_Repeat 283566 283640 150 + . . scaffold1528 TRF Tandem_Repeat 284654 284956 453 + . . scaffold1528 WUBlastX LINE_L1 286587 286661 21 + . . scaffold1528 WUBlastX LINE_L1-Tx1 287134 289758 930 + . . scaffold1528 WUBlastX LINE_L1 289681 289791 39 + . . scaffold1528 WUBlastX LINE_L1-Tx1 289832 290008 22 + . . scaffold1528 WUBlastX LINE_L1 290068 290127 20 + . . scaffold1528 GLEAN promoter 294403 295402 0.999039 + . ID=CGI_10013229; scaffold1528 GLEAN mRNA 295403 317666 0.999039 + . ID=CGI_10013229; scaffold1528 TRF Tandem_Repeat 295752 295781 60 + . . scaffold1528 TRF Tandem_Repeat 301763 302612 1179 + . . scaffold1528 TRF Tandem_Repeat 315070 315156 167 + . . scaffold1528 WUBlastX LINE_L1-Tx1 321663 321791 39 + . . scaffold1528 WUBlastX LINE_L1-Tx1 321722 321928 69 + . . scaffold1528 WUBlastX LINE_L1-Tx1 321755 322000 47 + . . scaffold1528 WUBlastX LINE_L1-Tx1 321773 321931 80 + . . scaffold1528 WUBlastX LINE_L1-Tx1 322496 322600 23 + . . scaffold1528 WUBlastX LINE_L1-Tx1 322609 322722 65 + . . scaffold1528 WUBlastX LINE_L1-Tx1 322621 322770 53 + . . scaffold1528 WUBlastX LINE_L1 322627 322932 29 + . . scaffold1528 TRF Tandem_Repeat 323228 323279 104 + . . scaffold1528 TRF Tandem_Repeat 330095 330541 262 + . . scaffold1528 TRF Tandem_Repeat 330885 331234 425 + . . scaffold1529 GLEAN mRNA 6907 7272 1 - . ID=CGI_10000618; scaffold1529 GLEAN promoter 7273 7715 1 - . ID=CGI_10000618; scaffold1530 GLEAN promoter 1 396 0.999999 + . ID=CGI_10000390; scaffold1530 GLEAN mRNA 397 1678 0.999999 + . ID=CGI_10000390; scaffold1531 GLEAN promoter 699 1698 0.999674 + . ID=CGI_10000820; scaffold1531 GLEAN mRNA 1699 10376 0.999674 + . ID=CGI_10000820; scaffold1532 GLEAN mRNA 31 3314 1 - . ID=CGI_10028230; scaffold1532 GLEAN promoter 3315 4314 1 - . ID=CGI_10028230; scaffold1532 GLEAN promoter 5946 6945 1 + . ID=CGI_10028231; scaffold1532 GLEAN mRNA 6946 21540 1 + . ID=CGI_10028231; scaffold1532 TRF Tandem_Repeat 8248 8298 93 + . . scaffold1532 GLEAN promoter 27246 28245 0.499655 + . ID=CGI_10028232; scaffold1532 GLEAN mRNA 28246 32426 0.499655 + . ID=CGI_10028232; scaffold1532 TRF Tandem_Repeat 34561 34613 88 + . . scaffold1532 TRF Tandem_Repeat 34561 34616 58 + . . scaffold1532 TRF Tandem_Repeat 34567 34616 73 + . . scaffold1532 TRF Tandem_Repeat 39658 39704 85 + . . scaffold1532 TRF Tandem_Repeat 41507 41598 89 + . . scaffold1532 TRF Tandem_Repeat 47554 47587 68 + . . scaffold1532 WUBlastX LINE_L2 53903 57187 1781 - . . scaffold1532 WUBlastX LINE_CR1-L2 57259 57306 29 - . . scaffold1532 WUBlastX LINE_L2 58044 58565 45 - . . scaffold1532 WUBlastX LINE_CR1-L2 58125 58526 127 - . . scaffold1532 WUBlastX LINE_CR1-L2 58167 58649 69 - . . scaffold1532 GLEAN promoter 66061 67060 0.89002 + . ID=CGI_10028233; scaffold1532 GLEAN mRNA 67061 101808 0.89002 + . ID=CGI_10028233; scaffold1532 TRF Tandem_Repeat 73310 73565 322 + . . scaffold1532 GLEAN mRNA 93926 95044 0.999661 - . ID=CGI_10028234; scaffold1532 GLEAN promoter 95045 96044 0.999661 - . ID=CGI_10028234; scaffold1532 GLEAN mRNA 106072 115792 0.937298 - . ID=CGI_10028235; scaffold1532 TRF Tandem_Repeat 108128 108403 216 + . . scaffold1532 GLEAN promoter 115793 116792 0.937298 - . ID=CGI_10028235; scaffold1532 TRF Tandem_Repeat 120341 120466 193 + . . scaffold1532 TRF Tandem_Repeat 124716 124767 104 + . . scaffold1532 WUBlastX LTR_Pao 139909 142926 2110 - . . scaffold1532 WUBlastX LTR_Pao 142923 144026 624 - . . scaffold1532 WUBlastX LTR_Pao 143998 144432 236 - . . scaffold1532 WUBlastX LTR_Pao 144004 144747 236 - . . scaffold1532 WUBlastX LTR_Pao 144559 144834 24 - . . scaffold1532 TRF Tandem_Repeat 146131 146167 56 + . . scaffold1532 WUBlastX LINE_L2 169232 169513 49 + . . scaffold1532 WUBlastX LINE_L1 169298 169510 93 + . . scaffold1532 WUBlastX DNA_Harbinger 170238 170981 181 + . . scaffold1532 WUBlastX DNA_Harbinger 171627 171932 167 - . . scaffold1532 WUBlastX DNA_Harbinger 171756 171986 67 - . . scaffold1532 WUBlastX DNA_Harbinger 173664 173975 63 + . . scaffold1532 GLEAN mRNA 176651 177200 0.889583 - . ID=CGI_10028236; scaffold1532 WUBlastX DNA_Harbinger 176657 176953 77 - . . scaffold1532 WUBlastX DNA_Harbinger 176747 176941 94 - . . scaffold1532 GLEAN promoter 177201 178200 0.889583 - . ID=CGI_10028236; scaffold1532 WUBlastX DNA_Harbinger 178080 178166 46 - . . scaffold1532 WUBlastX DNA_Harbinger 178189 178482 121 - . . scaffold1532 WUBlastX LINE_Penelope 185880 186341 45 + . . scaffold1532 WUBlastX LINE_Penelope 185958 186758 210 + . . scaffold1532 WUBlastX LINE_Penelope 186537 186800 44 + . . scaffold1532 WUBlastX LINE_Penelope 188304 188723 23 - . . scaffold1532 WUBlastX LINE_Penelope 188331 188609 53 - . . scaffold1532 GLEAN mRNA 190650 203280 0.449006 - . ID=CGI_10028237; scaffold1532 TRF Tandem_Repeat 199228 199322 102 + . . scaffold1532 GLEAN promoter 203281 204280 0.449006 - . ID=CGI_10028237; scaffold1532 GLEAN mRNA 204415 207217 0.999676 - . ID=CGI_10028238; scaffold1532 GLEAN promoter 207218 208217 0.999676 - . ID=CGI_10028238; scaffold1532 WUBlastX LINE_RTE-X 208362 208664 56 - . . scaffold1532 WUBlastX LTR_Gypsy 214739 215485 59 + . . scaffold1532 WUBlastX LTR_Gypsy 214868 215596 284 + . . scaffold1532 WUBlastX LTR_Gypsy 215204 215695 62 + . . scaffold1532 WUBlastX LTR_Gypsy 215692 216789 348 + . . scaffold1532 WUBlastX LTR_Gypsy 216688 216831 67 + . . scaffold1532 WUBlastX LTR_Gypsy 217307 217417 22 + . . scaffold1532 GLEAN promoter 230877 231876 0.438723 + . ID=CGI_10028239; scaffold1532 GLEAN mRNA 231877 233427 0.438723 + . ID=CGI_10028239; scaffold1532 WUBlastX LTR_Gypsy-Cigr 232054 232605 128 + . . scaffold1532 WUBlastX LTR_Gypsy-Cigr 232144 232836 178 + . . scaffold1532 WUBlastX LINE_L1 236442 237074 88 + . . scaffold1532 GLEAN promoter 245532 246531 0.799581 + . ID=CGI_10028240; scaffold1532 GLEAN mRNA 246532 248136 0.799581 + . ID=CGI_10028240; scaffold1532 TRF Tandem_Repeat 252355 252391 65 + . . scaffold1532 GLEAN mRNA 254002 254406 0.986676 - . ID=CGI_10028241; scaffold1532 GLEAN promoter 254407 255406 0.986676 - . ID=CGI_10028241; scaffold1532 WUBlastX LINE_RTE-X 261699 262157 36 + . . scaffold1532 WUBlastX LINE_RTE-X 261825 262160 51 + . . scaffold1532 WUBlastX LINE_L1 262566 262601 22 + . . scaffold1532 WUBlastX LINE_L1 262727 262783 24 + . . scaffold1532 WUBlastX LINE_L2 262742 262819 26 + . . scaffold1532 WUBlastX LINE_L1 263360 264418 35 + . . scaffold1532 WUBlastX LINE_RTE-X 263522 265369 708 + . . scaffold1532 TRF Tandem_Repeat 265588 265619 64 + . . scaffold1532 TRF Tandem_Repeat 268644 268684 64 + . . scaffold1532 TRF Tandem_Repeat 271442 271485 88 + . . scaffold1532 TRF Tandem_Repeat 271979 272015 74 + . . scaffold1532 GLEAN mRNA 273642 274274 0.420219 - . ID=CGI_10028242; scaffold1532 GLEAN promoter 274275 275274 0.420219 - . ID=CGI_10028242; scaffold1532 TRF Tandem_Repeat 274355 274488 126 + . . scaffold1532 TRF Tandem_Repeat 280321 280356 72 + . . scaffold1532 TRF Tandem_Repeat 285954 285988 70 + . . scaffold1532 GLEAN promoter 295822 296821 0.835701 + . ID=CGI_10028243; scaffold1532 GLEAN mRNA 296822 297976 0.835701 + . ID=CGI_10028243; scaffold1532 TRF Tandem_Repeat 300245 300305 104 + . . scaffold1532 TRF Tandem_Repeat 301558 301650 143 + . . scaffold1532 WUBlastX DNA_IS4EU 303169 303426 29 - . . scaffold1532 WUBlastX LTR_Gypsy 306489 307460 442 - . . scaffold1532 WUBlastX LTR_Gypsy 306750 307508 538 - . . scaffold1532 WUBlastX LTR_Gypsy 307487 309628 1746 - . . scaffold1532 WUBlastX LTR_Gypsy 309622 310278 204 - . . scaffold1532 WUBlastX LTR_Gypsy 310329 310910 87 - . . scaffold1532 WUBlastX LTR_Gypsy 310425 310856 136 - . . scaffold1532 WUBlastX LTR_Gypsy 311120 312010 435 - . . scaffold1532 TRF Tandem_Repeat 316797 316844 96 + . . scaffold1532 TRF Tandem_Repeat 317162 317209 87 + . . scaffold1532 TRF Tandem_Repeat 319890 319934 81 + . . scaffold1532 GLEAN promoter 320703 321702 0.99935 + . ID=CGI_10028244; scaffold1532 GLEAN mRNA 321703 334271 0.99935 + . ID=CGI_10028244; scaffold1532 GLEAN mRNA 325933 331440 0.918094 - . ID=CGI_10028245; scaffold1532 TRF Tandem_Repeat 326842 326887 92 + . . scaffold1532 WUBlastX LINE_RTE-X 327178 330675 2069 - . . scaffold1532 WUBlastX LINE_RTE-X 330742 331482 199 - . . scaffold1532 GLEAN promoter 331441 332440 0.918094 - . ID=CGI_10028245; scaffold1532 TRF Tandem_Repeat 332533 332584 104 + . . scaffold1532 GLEAN mRNA 338883 350677 1 - . ID=CGI_10028246; scaffold1532 GLEAN promoter 350032 351031 0.999994 + . ID=CGI_10028247; scaffold1532 GLEAN promoter 350678 351677 1 - . ID=CGI_10028246; scaffold1532 GLEAN mRNA 351032 354777 0.999994 + . ID=CGI_10028247; scaffold1532 WUBlastX LTR_Gypsy 367171 367995 245 + . . scaffold1532 WUBlastX LTR_Gypsy 368010 368231 86 + . . scaffold1532 WUBlastX LTR_Gypsy 368228 368407 34 + . . scaffold1532 WUBlastX LTR_Gypsy 368353 368466 53 + . . scaffold1532 WUBlastX LTR_Gypsy 368377 368736 153 + . . scaffold1532 WUBlastX LTR_Gypsy 368476 369414 697 + . . scaffold1532 WUBlastX LTR_Gypsy 369416 370324 575 + . . scaffold1532 WUBlastX LTR_Gypsy 370317 370964 287 + . . scaffold1532 TRF Tandem_Repeat 372393 372465 146 + . . scaffold1532 TRF Tandem_Repeat 372463 372491 58 + . . scaffold1532 GLEAN mRNA 379596 382070 0.544322 - . ID=CGI_10028248; scaffold1532 GLEAN promoter 382071 383070 0.544322 - . ID=CGI_10028248; scaffold1532 TRF Tandem_Repeat 382783 382859 154 + . . scaffold1532 TRF Tandem_Repeat 382857 382889 57 + . . scaffold1532 TRF Tandem_Repeat 387055 387089 70 + . . scaffold1532 GLEAN promoter 390874 391873 0.462643 + . ID=CGI_10028249; scaffold1532 GLEAN mRNA 391874 403369 0.462643 + . ID=CGI_10028249; scaffold1532 WUBlastX LTR_Gypsy 391970 392923 358 + . . scaffold1532 WUBlastX LTR_Gypsy 392123 393085 394 + . . scaffold1532 WUBlastX LTR_Gypsy 393043 393513 125 + . . scaffold1532 WUBlastX LTR_Gypsy 393539 393670 31 + . . scaffold1532 WUBlastX LTR_Gypsy 393698 393784 27 + . . scaffold1532 WUBlastX LTR_Gypsy 393767 394531 83 + . . scaffold1532 WUBlastX LTR_Gypsy 393905 394525 95 + . . scaffold1532 WUBlastX LTR_Gypsy 394034 394531 489 + . . scaffold1532 WUBlastX LTR_Gypsy 394527 395360 569 + . . scaffold1532 WUBlastX LTR_Gypsy 395371 396450 738 + . . scaffold1532 WUBlastX DNA_Kolobok-IS4 397397 397744 94 + . . scaffold1532 WUBlastX DNA_IS4EU 397421 397828 89 + . . scaffold1532 WUBlastX DNA_IS4EU 397883 397954 57 + . . scaffold1532 WUBlastX DNA_IS4EU 397883 397981 56 + . . scaffold1532 GLEAN promoter 404806 405805 0.729212 + . ID=CGI_10028250; scaffold1532 GLEAN mRNA 405806 428910 0.729212 + . ID=CGI_10028250; scaffold1532 TRF Tandem_Repeat 408086 408151 132 + . . scaffold1532 TRF Tandem_Repeat 409084 409125 68 + . . scaffold1532 WUBlastX LINE_R2 409942 410019 23 - . . scaffold1532 WUBlastX LINE_RTE-X 410176 410643 53 - . . scaffold1532 WUBlastX LINE_RTE-X 410296 410694 102 - . . scaffold1532 WUBlastX LINE_RTE-X 410766 410960 51 - . . scaffold1532 WUBlastX LINE_RTE-X 410799 411734 478 - . . scaffold1532 WUBlastX LINE_RTE-X 410799 411950 465 - . . scaffold1532 WUBlastX LINE_RTE-X 410802 412193 431 - . . scaffold1532 WUBlastX LINE_I 411798 412280 38 - . . scaffold1532 WUBlastX LINE_L1-Tx1 412293 412685 211 - . . scaffold1532 TRF Tandem_Repeat 435177 435322 130 + . . scaffold1532 GLEAN mRNA 445961 453744 0.999675 - . ID=CGI_10028251; scaffold1532 GLEAN promoter 453745 454744 0.999675 - . ID=CGI_10028251; scaffold1532 TRF Tandem_Repeat 463769 463800 64 + . . scaffold1532 GLEAN promoter 467096 468095 0.999676 + . ID=CGI_10028252; scaffold1532 GLEAN mRNA 468096 471822 0.999676 + . ID=CGI_10028252; scaffold1532 TRF Tandem_Repeat 479916 479968 76 + . . scaffold1532 TRF Tandem_Repeat 479919 479970 58 + . . scaffold1532 WUBlastX DNA_IS4EU 485434 485700 38 + . . scaffold1532 WUBlastX DNA_IS4EU 485793 485969 57 + . . scaffold1532 WUBlastX DNA_IS4EU 485799 485921 66 + . . scaffold1532 WUBlastX DNA_IS4EU 486364 487068 323 - . . scaffold1532 WUBlastX DNA_IS4EU 487064 487324 113 - . . scaffold1532 WUBlastX DNA_IS4EU 487076 487585 109 - . . scaffold1532 WUBlastX DNA_IS4EU 487930 488523 111 + . . scaffold1532 WUBlastX DNA_IS4EU 488035 488523 276 + . . scaffold1532 WUBlastX DNA_Kolobok-IS4 490081 490890 216 + . . scaffold1532 WUBlastX DNA_IS4EU 490093 490719 318 + . . scaffold1532 TRF Tandem_Repeat 510949 511138 189 + . . scaffold1532 TRF Tandem_Repeat 510951 511138 176 + . . scaffold1532 TRF Tandem_Repeat 511808 512046 221 + . . scaffold1532 TRF Tandem_Repeat 511810 512045 175 + . . scaffold1532 TRF Tandem_Repeat 521883 521967 163 + . . scaffold1532 GLEAN promoter 522729 523728 0.969356 + . ID=CGI_10028254; scaffold1532 GLEAN mRNA 523729 549500 0.969356 + . ID=CGI_10028254; scaffold1532 TRF Tandem_Repeat 525511 525548 76 + . . scaffold1532 TRF Tandem_Repeat 531214 531287 121 + . . scaffold1532 TRF Tandem_Repeat 531214 531287 121 + . . scaffold1532 TRF Tandem_Repeat 531214 531287 121 + . . scaffold1532 TRF Tandem_Repeat 533320 533389 113 + . . scaffold1532 TRF Tandem_Repeat 538544 538625 155 + . . scaffold1532 TRF Tandem_Repeat 538625 538664 53 + . . scaffold1532 TRF Tandem_Repeat 540476 540514 78 + . . scaffold1532 GLEAN mRNA 554051 561900 1 - . ID=CGI_10028255; scaffold1532 GLEAN promoter 561901 562900 1 - . ID=CGI_10028255; scaffold1532 GLEAN mRNA 565727 566074 0.999984 - . ID=CGI_10028256; scaffold1532 GLEAN promoter 566075 567074 0.999984 - . ID=CGI_10028256; scaffold1532 TRF Tandem_Repeat 576071 576095 50 + . . scaffold1532 GLEAN mRNA 577371 590809 0.942324 - . ID=CGI_10028257; scaffold1532 GLEAN promoter 581141 582140 0.544851 + . ID=CGI_10028258; scaffold1532 TRF Tandem_Repeat 582038 582110 146 + . . scaffold1532 GLEAN mRNA 582141 582743 0.544851 + . ID=CGI_10028258; scaffold1532 TRF Tandem_Repeat 584333 584620 354 + . . scaffold1532 TRF Tandem_Repeat 584403 584631 276 + . . scaffold1532 WUBlastX DNA_Kolobok 586778 587047 76 - . . scaffold1532 WUBlastX DNA_Kolobok 586841 587047 84 - . . scaffold1532 WUBlastX DNA_Kolobok 587374 587454 24 - . . scaffold1532 WUBlastX DNA_Kolobok 587670 587996 88 - . . scaffold1532 WUBlastX DNA_Kolobok 587688 587897 92 - . . scaffold1532 GLEAN promoter 590810 591809 0.942324 - . ID=CGI_10028257; scaffold1532 GLEAN promoter 591573 592572 0.615282 + . ID=CGI_10028259; scaffold1532 GLEAN mRNA 592573 597797 0.615282 + . ID=CGI_10028259; scaffold1532 TRF Tandem_Repeat 595059 595121 65 + . . scaffold1532 TRF Tandem_Repeat 598250 598346 126 + . . scaffold1532 TRF Tandem_Repeat 598521 598554 50 + . . scaffold1532 WUBlastX LTR_Gypsy 599430 599483 21 + . . scaffold1532 WUBlastX LTR_Gypsy 599454 599528 23 + . . scaffold1532 WUBlastX LTR_Gypsy 600193 601173 391 + . . scaffold1532 WUBlastX LTR_Gypsy 600358 601353 366 + . . scaffold1532 WUBlastX LTR_Gypsy 600361 601185 552 + . . scaffold1532 WUBlastX LTR_Gypsy 601544 602860 614 + . . scaffold1532 WUBlastX LTR_Gypsy 601565 603133 399 + . . scaffold1532 GLEAN promoter 602430 603429 0.999984 + . ID=CGI_10028260; scaffold1532 WUBlastX LTR_Pao 603137 603283 60 + . . scaffold1532 WUBlastX LTR_Pao 603170 603274 64 + . . scaffold1532 GLEAN mRNA 603430 604998 0.999984 + . ID=CGI_10028260; scaffold1532 GLEAN mRNA 606606 610636 0.502786 - . ID=CGI_10028261; scaffold1532 WUBlastX DNA_PiggyBac 606633 607109 160 - . . scaffold1532 WUBlastX DNA_PiggyBac 606840 607175 68 - . . scaffold1532 WUBlastX DNA_PiggyBac 607338 607526 105 - . . scaffold1532 WUBlastX DNA_PiggyBac 607338 607589 59 - . . scaffold1532 WUBlastX DNA_PiggyBac 608523 608678 56 - . . scaffold1532 WUBlastX DNA_PiggyBac 608872 608943 25 - . . scaffold1532 WUBlastX DNA_PiggyBac 609026 609265 35 - . . scaffold1532 WUBlastX DNA_PiggyBac 609146 609265 65 - . . scaffold1532 WUBlastX DNA_PiggyBac 609844 609966 87 - . . scaffold1532 WUBlastX DNA_PiggyBac 610151 610570 113 - . . scaffold1532 GLEAN promoter 610637 611636 0.502786 - . ID=CGI_10028261; scaffold1532 TRF Tandem_Repeat 632595 633308 881 + . . scaffold1532 GLEAN promoter 633183 634182 0.996769 + . ID=CGI_10028262; scaffold1532 GLEAN promoter 634106 635105 0.477064 + . ID=CGI_10028263; scaffold1532 GLEAN mRNA 634183 634494 0.996769 + . ID=CGI_10028262; scaffold1532 GLEAN mRNA 635106 637133 0.477064 + . ID=CGI_10028263; scaffold1532 TRF Tandem_Repeat 635407 635503 135 + . . scaffold1532 WUBlastX DNA_Sola 636951 637121 35 + . . scaffold1532 GLEAN promoter 637492 638491 0.995183 + . ID=CGI_10028264; scaffold1532 TRF Tandem_Repeat 637992 638044 54 + . . scaffold1532 GLEAN mRNA 638492 642462 0.995183 + . ID=CGI_10028264; scaffold1532 WUBlastX LTR_Ngaro 638912 639115 105 + . . scaffold1532 WUBlastX LTR_Ngaro 639358 640545 257 + . . scaffold1532 WUBlastX LTR_Ngaro 640269 640919 202 + . . scaffold1532 WUBlastX LTR_Ngaro 640868 641413 145 + . . scaffold1532 WUBlastX LTR_Ngaro 641072 641425 153 + . . scaffold1532 WUBlastX LTR_Ngaro 641360 641776 89 + . . scaffold1532 WUBlastX LTR_Ngaro 641498 641788 124 + . . scaffold1532 WUBlastX LTR_Gypsy 644446 645294 72 - . . scaffold1532 WUBlastX LTR_Gypsy 644584 645393 118 - . . scaffold1532 WUBlastX LTR_Gypsy 644890 645417 133 - . . scaffold1532 WUBlastX LTR_Gypsy 645399 646238 73 - . . scaffold1532 WUBlastX LTR_Gypsy 645627 646271 113 - . . scaffold1532 WUBlastX LTR_Gypsy 645702 646244 183 - . . scaffold1532 WUBlastX LTR_Gypsy 645852 646400 83 - . . scaffold1532 GLEAN mRNA 648398 649285 0.59321 - . ID=CGI_10028265; scaffold1532 GLEAN promoter 649286 650285 0.59321 - . ID=CGI_10028265; scaffold1532 TRF Tandem_Repeat 649479 650937 2061 + . . scaffold1532 TRF Tandem_Repeat 650964 651007 70 + . . scaffold1532 WUBlastX LTR_Gypsy 651582 651803 29 - . . scaffold1532 WUBlastX LTR_Gypsy-Cigr 651666 651845 103 - . . scaffold1532 WUBlastX LTR_Gypsy 651869 652477 405 - . . scaffold1532 WUBlastX LTR_Gypsy-Cigr 652464 652826 175 - . . scaffold1532 WUBlastX LTR_Gypsy 652500 652895 137 - . . scaffold1532 TRF Tandem_Repeat 652945 653227 326 + . . scaffold1532 WUBlastX LTR_Gypsy 653577 653774 28 - . . scaffold1532 WUBlastX LTR_Gypsy 653611 653865 46 - . . scaffold1532 WUBlastX LTR_Gypsy 653658 653774 54 - . . scaffold1532 WUBlastX LTR_Gypsy 653746 654027 74 - . . scaffold1532 WUBlastX LTR_Gypsy 653746 653925 107 - . . scaffold1532 WUBlastX LTR_Gypsy 653746 653865 121 - . . scaffold1532 WUBlastX LTR_Gypsy 656206 656967 107 - . . scaffold1532 WUBlastX LTR_Gypsy-Cigr 656347 657090 68 - . . scaffold1532 WUBlastX DNA_Harbinger 657742 657912 61 - . . scaffold1532 WUBlastX DNA_Harbinger 657802 657909 101 - . . scaffold1532 TRF Tandem_Repeat 696497 696555 118 + . . scaffold1532 TRF Tandem_Repeat 697312 697379 65 + . . scaffold1532 TRF Tandem_Repeat 700804 700855 86 + . . scaffold1532 TRF Tandem_Repeat 702795 702848 108 + . . scaffold1532 TRF Tandem_Repeat 705626 705697 94 + . . scaffold1532 TRF Tandem_Repeat 706448 706472 50 + . . scaffold1532 TRF Tandem_Repeat 708394 708452 118 + . . scaffold1532 TRF Tandem_Repeat 715376 715442 55 + . . scaffold1532 GLEAN mRNA 716288 721636 1 - . ID=CGI_10028266; scaffold1532 GLEAN promoter 721637 722636 1 - . ID=CGI_10028266; scaffold1532 GLEAN mRNA 724787 737762 0.999929 - . ID=CGI_10028267; scaffold1532 TRF Tandem_Repeat 728283 728882 1092 + . . scaffold1532 TRF Tandem_Repeat 729858 730020 221 + . . scaffold1532 TRF Tandem_Repeat 733574 733607 68 + . . scaffold1532 GLEAN promoter 737763 738762 0.999929 - . ID=CGI_10028267; scaffold1532 GLEAN promoter 739380 740379 0.960754 + . ID=CGI_10028268; scaffold1532 GLEAN mRNA 740380 743413 0.960754 + . ID=CGI_10028268; scaffold1532 TRF Tandem_Repeat 749632 749697 78 + . . scaffold1532 TRF Tandem_Repeat 750612 750710 130 + . . scaffold1532 GLEAN promoter 750788 751787 0.966644 + . ID=CGI_10028269; scaffold1532 GLEAN mRNA 751788 767026 0.966644 + . ID=CGI_10028269; scaffold1532 GLEAN mRNA 754224 756546 0.77692 - . ID=CGI_10028270; scaffold1532 TRF Tandem_Repeat 754643 754670 56 + . . scaffold1532 TRF Tandem_Repeat 754669 754730 124 + . . scaffold1532 GLEAN promoter 756547 757546 0.77692 - . ID=CGI_10028270; scaffold1532 TRF Tandem_Repeat 764966 765027 88 + . . scaffold1532 TRF Tandem_Repeat 770000 770046 94 + . . scaffold1532 TRF Tandem_Repeat 772004 772103 155 + . . scaffold1532 WUBlastX LINE_L1-Tx1 776915 777757 86 - . . scaffold1532 WUBlastX LINE_L1-Tx1 777763 778041 50 - . . scaffold1532 WUBlastX LINE_L1 777826 778053 62 - . . scaffold1532 WUBlastX LINE_L1-Tx1 777886 778233 23 - . . scaffold1532 GLEAN mRNA 780284 792817 0.96199 - . ID=CGI_10028271; scaffold1532 TRF Tandem_Repeat 783901 783927 54 + . . scaffold1532 TRF Tandem_Repeat 784581 784637 114 + . . scaffold1532 TRF Tandem_Repeat 790561 790627 134 + . . scaffold1532 GLEAN promoter 792818 793817 0.96199 - . ID=CGI_10028271; scaffold1532 GLEAN mRNA 794910 825805 0.837125 - . ID=CGI_10028272; scaffold1532 TRF Tandem_Repeat 796209 796249 82 + . . scaffold1532 TRF Tandem_Repeat 798764 798814 88 + . . scaffold1532 TRF Tandem_Repeat 799691 799787 88 + . . scaffold1532 TRF Tandem_Repeat 815120 815153 50 + . . scaffold1532 TRF Tandem_Repeat 815153 815196 70 + . . scaffold1532 GLEAN promoter 825806 826805 0.837125 - . ID=CGI_10028272; scaffold1532 TRF Tandem_Repeat 830176 830267 94 + . . scaffold1532 TRF Tandem_Repeat 830188 830266 86 + . . scaffold1532 TRF Tandem_Repeat 834567 834591 50 + . . scaffold1532 TRF Tandem_Repeat 841355 841397 77 + . . scaffold1532 TRF Tandem_Repeat 854979 855097 150 + . . scaffold1532 TRF Tandem_Repeat 854989 855082 98 + . . scaffold1532 TRF Tandem_Repeat 866342 866425 159 + . . scaffold1532 TRF Tandem_Repeat 867977 868071 88 + . . scaffold1532 TRF Tandem_Repeat 867977 868071 79 + . . scaffold1532 TRF Tandem_Repeat 868081 868112 64 + . . scaffold1532 TRF Tandem_Repeat 873274 873323 100 + . . scaffold1532 TRF Tandem_Repeat 875213 875291 158 + . . scaffold1532 TRF Tandem_Repeat 875322 875371 75 + . . scaffold1532 GLEAN promoter 876478 877477 0.99999 + . ID=CGI_10028273; scaffold1532 TRF Tandem_Repeat 876869 876902 59 + . . scaffold1532 GLEAN mRNA 877478 906408 0.99999 + . ID=CGI_10028273; scaffold1532 GLEAN promoter 917187 918186 0.988938 + . ID=CGI_10028274; scaffold1532 GLEAN mRNA 918187 932549 0.988938 + . ID=CGI_10028274; scaffold1532 TRF Tandem_Repeat 929520 930239 212 + . . scaffold1532 TRF Tandem_Repeat 929599 930033 419 + . . scaffold1532 TRF Tandem_Repeat 931181 931756 202 + . . scaffold1532 TRF Tandem_Repeat 933477 933595 71 + . . scaffold1532 TRF Tandem_Repeat 933479 933609 85 + . . scaffold1532 TRF Tandem_Repeat 937798 937843 92 + . . scaffold1532 TRF Tandem_Repeat 946722 946778 114 + . . scaffold1532 GLEAN promoter 950741 951740 0.99945 + . ID=CGI_10028275; scaffold1532 GLEAN mRNA 951741 953477 0.99945 + . ID=CGI_10028275; scaffold1532 GLEAN promoter 955349 956348 0.999878 + . ID=CGI_10028276; scaffold1532 GLEAN mRNA 956349 969868 0.999878 + . ID=CGI_10028276; scaffold1532 WUBlastX LINE_Penelope 957848 958207 37 + . . scaffold1532 WUBlastX LINE_Penelope 957875 958174 103 + . . scaffold1532 WUBlastX LINE_Penelope 958207 958854 160 + . . scaffold1532 TRF Tandem_Repeat 963188 963278 86 + . . scaffold1532 TRF Tandem_Repeat 963264 963324 50 + . . scaffold1532 GLEAN mRNA 970227 975953 0.953998 - . ID=CGI_10028277; scaffold1532 WUBlastX LINE_RTE-X 974934 975317 78 - . . scaffold1532 WUBlastX LINE_RTE-X 974994 975323 135 - . . scaffold1532 WUBlastX LINE_RTE-X 975120 975362 85 - . . scaffold1532 GLEAN promoter 975954 976953 0.953998 - . ID=CGI_10028277; scaffold1532 GLEAN mRNA 980578 997386 0.999875 - . ID=CGI_10028278; scaffold1532 WUBlastX LTR_Gypsy 987745 988080 111 + . . scaffold1532 WUBlastX LTR_Gypsy 988091 988837 86 + . . scaffold1532 WUBlastX LTR_Gypsy 988094 988651 218 + . . scaffold1532 WUBlastX LTR_Gypsy 988711 988866 57 + . . scaffold1532 WUBlastX LTR_Gypsy 988770 988898 26 + . . scaffold1532 GLEAN promoter 997387 998386 0.999875 - . ID=CGI_10028278; scaffold1532 TRF Tandem_Repeat 997472 997543 99 + . . scaffold1532 TRF Tandem_Repeat 997472 997543 99 + . . scaffold1532 TRF Tandem_Repeat 997472 997543 99 + . . scaffold1532 TRF Tandem_Repeat 1034394 1034437 88 + . . scaffold1532 TRF Tandem_Repeat 1036076 1036140 103 + . . scaffold1532 GLEAN mRNA 1062422 1062688 0.73346 - . ID=CGI_10028279; scaffold1532 WUBlastX LTR_DIRS 1062647 1063267 26 - . . scaffold1532 GLEAN promoter 1062689 1063688 0.73346 - . ID=CGI_10028279; scaffold1532 WUBlastX LTR_Ngaro 1062782 1063405 246 - . . scaffold1532 WUBlastX LTR_Ngaro 1062782 1063678 233 - . . scaffold1532 WUBlastX LTR_Ngaro 1063964 1064023 24 - . . scaffold1532 WUBlastX LTR_Ngaro 1064035 1064172 53 - . . scaffold1532 GLEAN mRNA 1066273 1066644 1 - . ID=CGI_10028280; scaffold1532 GLEAN promoter 1066645 1067644 1 - . ID=CGI_10028280; scaffold1532 TRF Tandem_Repeat 1069491 1069548 109 + . . scaffold1532 WUBlastX RC_Helitron 1078976 1082887 771 + . . scaffold1532 WUBlastX RC_Helitron 1082770 1083354 328 + . . scaffold1532 WUBlastX RC_Helitron 1083347 1083883 225 + . . scaffold1532 WUBlastX RC_Helitron 1083889 1084404 208 + . . scaffold1532 WUBlastX RC_Helitron 1083982 1084488 30 + . . scaffold1532 TRF Tandem_Repeat 1085957 1085982 52 + . . scaffold1532 TRF Tandem_Repeat 1088667 1088725 54 + . . scaffold1532 WUBlastX DNA_Maverick 1091258 1091887 161 - . . scaffold1532 WUBlastX DNA_Maverick 1091444 1091887 212 - . . scaffold1532 WUBlastX DNA_Maverick 1091832 1092356 253 - . . scaffold1532 WUBlastX LTR_Gypsy-Troyk 1101624 1102529 654 - . . scaffold1532 WUBlastX LTR_Gypsy-Troyk 1102329 1103018 297 - . . scaffold1532 WUBlastX LTR_Gypsy-Troyk 1103011 1104132 1176 - . . scaffold1532 WUBlastX DNA_IS4EU 1104501 1104626 38 + . . scaffold1532 WUBlastX DNA_IS4EU 1105595 1105708 30 + . . scaffold1532 WUBlastX DNA_IS4EU 1105876 1106043 49 + . . scaffold1532 WUBlastX DNA_IS4EU 1106441 1106575 33 + . . scaffold1532 WUBlastX DNA_IS4EU 1107784 1108161 173 + . . scaffold1532 WUBlastX DNA_IS4EU 1108412 1108960 414 - . . scaffold1532 WUBlastX DNA_Kolobok-IS4 1108942 1109412 168 - . . scaffold1532 WUBlastX DNA_IS4EU 1109900 1109983 28 - . . scaffold1532 WUBlastX DNA_IS4EU 1110344 1110490 81 - . . scaffold1532 WUBlastX LTR_Gypsy 1110583 1110918 109 - . . scaffold1532 WUBlastX LTR_Gypsy-Troyk 1110882 1111346 283 - . . scaffold1532 GLEAN mRNA 1112130 1112501 0.979648 - . ID=CGI_10028281; scaffold1532 WUBlastX LTR_Gypsy 1112145 1112564 81 - . . scaffold1532 WUBlastX LTR_Gypsy-Troyk 1112151 1112486 151 - . . scaffold1532 GLEAN promoter 1112502 1113501 0.979648 - . ID=CGI_10028281; scaffold1532 WUBlastX LTR_DIRS 1116797 1117324 51 + . . scaffold1532 WUBlastX LTR_DIRS 1117264 1117701 62 + . . scaffold1532 WUBlastX LTR_DIRS 1117345 1117701 70 + . . scaffold1532 WUBlastX LTR_DIRS 1117743 1117853 29 + . . scaffold1532 WUBlastX LTR_DIRS 1117849 1118070 78 + . . scaffold1532 WUBlastX LTR_DIRS 1118058 1118363 100 + . . scaffold1532 WUBlastX LTR_DIRS 1119139 1119405 103 + . . scaffold1532 WUBlastX DNA_IS4EU 1121629 1122069 49 + . . scaffold1532 WUBlastX DNA_Kolobok-IS4 1121710 1122072 56 + . . scaffold1532 WUBlastX DNA_IS4EU 1122300 1122458 28 + . . scaffold1532 GLEAN promoter 1126066 1127065 0.992288 + . ID=CGI_10028283; scaffold1532 GLEAN mRNA 1127066 1152811 0.992288 + . ID=CGI_10028283; scaffold1532 WUBlastX LTR_Ngaro 1133313 1133585 37 - . . scaffold1532 WUBlastX LTR_Ngaro 1133427 1133612 55 - . . scaffold1532 WUBlastX LTR_Ngaro 1133439 1133594 59 - . . scaffold1532 WUBlastX LTR_Ngaro 1133631 1133750 33 - . . scaffold1532 WUBlastX LTR_Ngaro 1133710 1133892 58 - . . scaffold1532 WUBlastX LTR_Ngaro 1133882 1134196 66 - . . scaffold1532 WUBlastX LTR_Ngaro 1134217 1134363 45 - . . scaffold1532 WUBlastX LTR_Ngaro 1134685 1135227 101 - . . scaffold1532 TRF Tandem_Repeat 1144266 1144324 118 + . . scaffold1532 GLEAN promoter 1152032 1153031 0.544852 + . ID=CGI_10028284; scaffold1532 GLEAN mRNA 1153032 1156319 0.544852 + . ID=CGI_10028284; scaffold1532 WUBlastX LINE_Penelope 1160050 1160334 35 - . . scaffold1532 WUBlastX LINE_Penelope 1162000 1162704 20 - . . scaffold1532 WUBlastX LINE_Penelope 1162402 1162677 30 - . . scaffold1532 WUBlastX LINE_Penelope 1162444 1162623 42 - . . scaffold1532 TRF Tandem_Repeat 1172608 1172693 145 + . . scaffold1532 WUBlastX LTR_Gypsy 1176011 1176055 20 - . . scaffold1532 WUBlastX LTR_Gypsy 1176071 1178779 1090 - . . scaffold1532 WUBlastX LTR_Gypsy 1176479 1180231 2298 - . . scaffold1532 WUBlastX LTR_Gypsy 1179521 1180378 59 - . . scaffold1532 WUBlastX LTR_Gypsy 1180546 1181463 108 - . . scaffold1532 WUBlastX LTR_Gypsy 1180603 1181298 110 - . . scaffold1532 WUBlastX LINE_L1-Tx1 1184612 1185925 133 - . . scaffold1532 WUBlastX LINE_L1-Tx1 1185533 1185943 167 - . . scaffold1532 WUBlastX LINE_L1-Tx1 1194079 1194258 63 + . . scaffold1532 WUBlastX LINE_L1-Tx1 1194273 1194356 31 + . . scaffold1532 WUBlastX LINE_L1-Tx1 1194288 1194350 34 + . . scaffold1532 WUBlastX LINE_L1-Tx1 1194408 1194506 20 + . . scaffold1532 WUBlastX LINE_L1-Tx1 1195244 1195387 32 + . . scaffold1532 WUBlastX LINE_L2 1196057 1196116 23 + . . scaffold1532 WUBlastX LINE_L1 1196796 1196924 21 + . . scaffold1532 WUBlastX LINE_RTE-X 1196832 1199069 1093 + . . scaffold1532 TRF Tandem_Repeat 1204211 1204241 53 + . . scaffold1532 TRF Tandem_Repeat 1205777 1205932 77 + . . scaffold1532 TRF Tandem_Repeat 1206825 1206880 98 + . . scaffold1532 TRF Tandem_Repeat 1207085 1207162 147 + . . scaffold1532 TRF Tandem_Repeat 1211478 1211524 76 + . . scaffold1532 TRF Tandem_Repeat 1212866 1213036 290 + . . scaffold1532 GLEAN mRNA 1221409 1231062 0.998995 - . ID=CGI_10028285; scaffold1532 GLEAN promoter 1231063 1232062 0.998995 - . ID=CGI_10028285; scaffold1532 GLEAN mRNA 1232732 1236633 0.627982 - . ID=CGI_10028286; scaffold1532 GLEAN promoter 1236634 1237633 0.627982 - . ID=CGI_10028286; scaffold1532 TRF Tandem_Repeat 1241755 1241800 67 + . . scaffold1532 TRF Tandem_Repeat 1256974 1257046 146 + . . scaffold1532 TRF Tandem_Repeat 1257044 1257076 66 + . . scaffold1532 TRF Tandem_Repeat 1278966 1279040 89 + . . scaffold1532 TRF Tandem_Repeat 1280282 1280309 56 + . . scaffold1532 WUBlastX DNA_hAT-Tip100 1282331 1282528 27 + . . scaffold1532 WUBlastX DNA_hAT-Tip100 1282679 1283434 154 + . . scaffold1532 WUBlastX DNA_hAT-Tip100 1282826 1283437 162 + . . scaffold1532 WUBlastX DNA_hAT-Tip100 1282931 1283443 356 + . . scaffold1532 WUBlastX DNA_hAT-Tip100 1283406 1284635 719 + . . scaffold1532 TRF Tandem_Repeat 1287097 1287131 70 + . . scaffold1532 TRF Tandem_Repeat 1287561 1287589 58 + . . scaffold1532 GLEAN promoter 1290599 1291598 0.999996 + . ID=CGI_10028287; scaffold1532 GLEAN mRNA 1291599 1296916 0.999996 + . ID=CGI_10028287; scaffold1532 GLEAN mRNA 1301035 1351939 0.999471 - . ID=CGI_10028288; scaffold1532 TRF Tandem_Repeat 1306884 1306925 84 + . . scaffold1532 TRF Tandem_Repeat 1314445 1314477 50 + . . scaffold1532 TRF Tandem_Repeat 1332475 1332529 110 + . . scaffold1532 TRF Tandem_Repeat 1335853 1335890 76 + . . scaffold1532 GLEAN promoter 1351940 1352939 0.999471 - . ID=CGI_10028288; scaffold1532 GLEAN mRNA 1355951 1380707 0.703185 - . ID=CGI_10028289; scaffold1532 TRF Tandem_Repeat 1380092 1380270 126 + . . scaffold1532 TRF Tandem_Repeat 1380142 1380256 106 + . . scaffold1532 TRF Tandem_Repeat 1380433 1380622 326 + . . scaffold1532 GLEAN promoter 1380708 1381707 0.703185 - . ID=CGI_10028289; scaffold1532 GLEAN mRNA 1394544 1396485 1 - . ID=CGI_10028290; scaffold1532 GLEAN promoter 1396486 1397485 1 - . ID=CGI_10028290; scaffold1532 TRF Tandem_Repeat 1396714 1396740 54 + . . scaffold1532 TRF Tandem_Repeat 1398795 1398842 96 + . . scaffold1532 GLEAN promoter 1400170 1401169 1 + . ID=CGI_10028291; scaffold1532 GLEAN mRNA 1401170 1403100 1 + . ID=CGI_10028291; scaffold1532 TRF Tandem_Repeat 1407092 1407130 53 + . . scaffold1532 GLEAN mRNA 1408196 1409146 0.999661 - . ID=CGI_10028292; scaffold1532 GLEAN promoter 1409103 1410102 1 + . ID=CGI_10028293; scaffold1532 GLEAN promoter 1409147 1410146 0.999661 - . ID=CGI_10028292; scaffold1532 TRF Tandem_Repeat 1409433 1409471 78 + . . scaffold1532 GLEAN mRNA 1410103 1416137 1 + . ID=CGI_10028293; scaffold1532 TRF Tandem_Repeat 1413517 1413572 103 + . . scaffold1532 TRF Tandem_Repeat 1420264 1420300 67 + . . scaffold1532 GLEAN mRNA 1421242 1436722 0.804182 - . ID=CGI_10028294; scaffold1532 TRF Tandem_Repeat 1424286 1424370 163 + . . scaffold1532 TRF Tandem_Repeat 1426448 1426479 64 + . . scaffold1532 TRF Tandem_Repeat 1428776 1428827 104 + . . scaffold1532 GLEAN promoter 1436723 1437722 0.804182 - . ID=CGI_10028294; scaffold1532 GLEAN mRNA 1440369 1441650 0.648545 - . ID=CGI_10028295; scaffold1532 GLEAN promoter 1441651 1442650 0.648545 - . ID=CGI_10028295; scaffold1532 GLEAN mRNA 1446258 1454254 0.687443 - . ID=CGI_10028296; scaffold1532 GLEAN promoter 1454255 1455254 0.687443 - . ID=CGI_10028296; scaffold1532 GLEAN mRNA 1455694 1464695 1 - . ID=CGI_10028297; scaffold1532 TRF Tandem_Repeat 1461501 1461549 98 + . . scaffold1532 TRF Tandem_Repeat 1463959 1464024 132 + . . scaffold1532 GLEAN promoter 1464696 1465695 1 - . ID=CGI_10028297; scaffold1532 GLEAN mRNA 1470892 1479935 0.999949 - . ID=CGI_10028298; scaffold1532 TRF Tandem_Repeat 1472501 1473049 737 + . . scaffold1532 GLEAN promoter 1479936 1480935 0.999949 - . ID=CGI_10028298; scaffold1532 GLEAN mRNA 1486529 1487982 1 - . ID=CGI_10028299; scaffold1532 GLEAN promoter 1487983 1488982 1 - . ID=CGI_10028299; scaffold1532 GLEAN promoter 1493498 1494497 1 + . ID=CGI_10028300; scaffold1532 GLEAN mRNA 1494498 1496112 1 + . ID=CGI_10028300; scaffold1532 GLEAN promoter 1496779 1497778 0.998575 + . ID=CGI_10028301; scaffold1532 GLEAN mRNA 1497779 1507074 0.998575 + . ID=CGI_10028301; scaffold1532 GLEAN mRNA 1497950 1498786 1 - . ID=CGI_10028302; scaffold1532 GLEAN promoter 1498787 1499786 1 - . ID=CGI_10028302; scaffold1532 TRF Tandem_Repeat 1504845 1505080 212 + . . scaffold1532 GLEAN mRNA 1508697 1510802 0.999539 - . ID=CGI_10028303; scaffold1532 GLEAN promoter 1510803 1511802 0.999539 - . ID=CGI_10028303; scaffold1532 GLEAN mRNA 1513048 1517030 1 - . ID=CGI_10028304; scaffold1532 GLEAN promoter 1517031 1518030 1 - . ID=CGI_10028304; scaffold1532 GLEAN mRNA 1520366 1523434 0.59541 - . ID=CGI_10028305; scaffold1532 GLEAN promoter 1523435 1524434 0.59541 - . ID=CGI_10028305; scaffold1532 GLEAN mRNA 1528379 1533385 0.999997 - . ID=CGI_10028306; scaffold1532 GLEAN promoter 1533386 1534385 0.999997 - . ID=CGI_10028306; scaffold1532 TRF Tandem_Repeat 1535205 1535375 137 + . . scaffold1532 TRF Tandem_Repeat 1535237 1535326 85 + . . scaffold1532 WUBlastX DNA_Harbinger 1540498 1540947 62 - . . scaffold1532 WUBlastX DNA_Harbinger 1540594 1540953 82 - . . scaffold1532 GLEAN mRNA 1542608 1545839 0.135186 - . ID=CGI_10028307; scaffold1532 GLEAN promoter 1545840 1546839 0.135186 - . ID=CGI_10028307; scaffold1532 TRF Tandem_Repeat 1547004 1547048 63 + . . scaffold1532 GLEAN mRNA 1547913 1548287 1 - . ID=CGI_10028308; scaffold1532 GLEAN promoter 1548288 1549287 1 - . ID=CGI_10028308; scaffold1532 GLEAN mRNA 1551097 1553246 0.997818 - . ID=CGI_10028309; scaffold1532 GLEAN promoter 1553247 1554246 0.997818 - . ID=CGI_10028309; scaffold1532 GLEAN mRNA 1559420 1560818 0.39366 - . ID=CGI_10028310; scaffold1532 GLEAN promoter 1560819 1561818 0.39366 - . ID=CGI_10028310; scaffold1532 GLEAN mRNA 1564766 1567550 0.660577 - . ID=CGI_10028311; scaffold1532 GLEAN promoter 1567551 1568550 0.660577 - . ID=CGI_10028311; scaffold1532 TRF Tandem_Repeat 1569835 1569868 59 + . . scaffold1532 WUBlastX LINE_L2 1574646 1575146 66 - . . scaffold1532 WUBlastX LINE_L2 1574763 1575305 47 - . . scaffold1532 WUBlastX LINE_L2 1574763 1575146 166 - . . scaffold1532 WUBlastX LINE_CR1 1575772 1575804 20 - . . scaffold1532 TRF Tandem_Repeat 1578628 1578671 88 + . . scaffold1532 TRF Tandem_Repeat 1579225 1579296 121 + . . scaffold1532 TRF Tandem_Repeat 1579229 1579296 100 + . . scaffold1532 GLEAN mRNA 1579852 1602581 0.966007 - . ID=CGI_10028312; scaffold1532 TRF Tandem_Repeat 1580767 1580804 76 + . . scaffold1532 TRF Tandem_Repeat 1591819 1594503 3530 + . . scaffold1532 GLEAN promoter 1602582 1603581 0.966007 - . ID=CGI_10028312; scaffold1532 TRF Tandem_Repeat 1604899 1604931 66 + . . scaffold1532 GLEAN mRNA 1605274 1607427 1 - . ID=CGI_10028313; scaffold1532 GLEAN promoter 1607428 1608427 1 - . ID=CGI_10028313; scaffold1532 TRF Tandem_Repeat 1608743 1608783 82 + . . scaffold1532 GLEAN promoter 1609301 1610300 1 + . ID=CGI_10028314; scaffold1532 GLEAN mRNA 1610301 1631386 1 + . ID=CGI_10028314; scaffold1532 TRF Tandem_Repeat 1615761 1615822 124 + . . scaffold1532 TRF Tandem_Repeat 1618838 1618873 54 + . . scaffold1532 TRF Tandem_Repeat 1624310 1625049 1063 + . . scaffold1532 TRF Tandem_Repeat 1625366 1626580 1878 + . . scaffold1532 TRF Tandem_Repeat 1646345 1646419 105 + . . scaffold1532 GLEAN promoter 1651437 1652436 0.899437 + . ID=CGI_10028315; scaffold1532 GLEAN mRNA 1652437 1653204 0.899437 + . ID=CGI_10028315; scaffold1532 TRF Tandem_Repeat 1658546 1658603 116 + . . scaffold1532 TRF Tandem_Repeat 1663872 1663935 128 + . . scaffold1532 GLEAN promoter 1668116 1669115 0.734544 + . ID=CGI_10028316; scaffold1532 GLEAN mRNA 1669116 1670212 0.734544 + . ID=CGI_10028316; scaffold1532 TRF Tandem_Repeat 1672853 1674358 1897 + . . scaffold1532 WUBlastX LINE_RTE-X 1675425 1675940 45 - . . scaffold1532 WUBlastX LINE_RTE-X 1675446 1675862 58 - . . scaffold1532 WUBlastX LINE_RTE-X 1675560 1675838 101 - . . scaffold1532 WUBlastX LINE_RTE-X 1675900 1676049 22 - . . scaffold1532 TRF Tandem_Repeat 1676208 1676256 98 + . . scaffold1532 TRF Tandem_Repeat 1677777 1677841 121 + . . scaffold1532 TRF Tandem_Repeat 1679295 1679344 91 + . . scaffold1532 TRF Tandem_Repeat 1679726 1679775 75 + . . scaffold1532 WUBlastX LINE_L2 1679812 1680189 22 - . . scaffold1532 WUBlastX LINE_CR1-L2 1679872 1680180 80 - . . scaffold1532 WUBlastX LINE_L2 1679935 1680192 93 - . . scaffold1532 WUBlastX LINE_CR1-L2 1680216 1680497 61 - . . scaffold1532 WUBlastX LINE_L2 1680231 1680446 77 - . . scaffold1532 WUBlastX LINE_RTE-X 1680237 1680401 79 - . . scaffold1532 TRF Tandem_Repeat 1681062 1681097 54 + . . scaffold1532 TRF Tandem_Repeat 1681143 1681956 1104 + . . scaffold1532 WUBlastX DNA_Harbinger 1682314 1682577 40 - . . scaffold1532 TRF Tandem_Repeat 1683485 1683528 52 + . . scaffold1532 TRF Tandem_Repeat 1683559 1684684 1501 + . . scaffold1532 WUBlastX LTR_Ngaro 1686993 1687229 34 - . . scaffold1532 WUBlastX LTR_Ngaro 1687813 1688433 152 - . . scaffold1532 WUBlastX LTR_Ngaro 1687938 1689311 358 - . . scaffold1532 WUBlastX LTR_Ngaro 1688427 1689284 358 - . . scaffold1532 TRF Tandem_Repeat 1691215 1691285 119 + . . scaffold1532 WUBlastX LINE_CR1 1705518 1705697 20 + . . scaffold1532 TRF Tandem_Repeat 1706198 1706249 63 + . . scaffold1532 TRF Tandem_Repeat 1706198 1706248 59 + . . scaffold1532 WUBlastX LINE_CR1 1706638 1707135 86 + . . scaffold1533 GLEAN mRNA 203 10044 0.80634 - . ID=CGI_10012863; scaffold1533 GLEAN promoter 1485 2484 0.879993 + . ID=CGI_10012864; scaffold1533 GLEAN mRNA 2485 40419 0.879993 + . ID=CGI_10012864; scaffold1533 TRF Tandem_Repeat 3846 4842 1205 + . . scaffold1533 TRF Tandem_Repeat 3846 4842 1047 + . . scaffold1533 GLEAN promoter 10045 11044 0.80634 - . ID=CGI_10012863; scaffold1533 TRF Tandem_Repeat 15544 15798 474 + . . scaffold1533 TRF Tandem_Repeat 18766 19773 1683 + . . scaffold1533 TRF Tandem_Repeat 20327 20939 1028 + . . scaffold1533 TRF Tandem_Repeat 21834 22215 629 + . . scaffold1533 TRF Tandem_Repeat 26594 26886 388 + . . scaffold1533 TRF Tandem_Repeat 38511 38579 122 + . . scaffold1533 TRF Tandem_Repeat 40594 41061 346 + . . scaffold1533 TRF Tandem_Repeat 42435 42499 130 + . . scaffold1533 GLEAN promoter 43678 44677 0.999675 + . ID=CGI_10012865; scaffold1533 GLEAN mRNA 44678 60659 0.999675 + . ID=CGI_10012865; scaffold1533 TRF Tandem_Repeat 55469 55727 133 + . . scaffold1533 TRF Tandem_Repeat 55597 55737 264 + . . scaffold1533 GLEAN promoter 62372 63371 0.814163 + . ID=CGI_10012866; scaffold1533 GLEAN mRNA 63372 78897 0.814163 + . ID=CGI_10012866; scaffold1533 TRF Tandem_Repeat 67574 68312 1214 + . . scaffold1533 TRF Tandem_Repeat 75430 76124 1147 + . . scaffold1533 TRF Tandem_Repeat 75430 76124 1147 + . . scaffold1533 GLEAN mRNA 79904 80950 0.999991 - . ID=CGI_10012867; scaffold1533 GLEAN promoter 80951 81950 0.999991 - . ID=CGI_10012867; scaffold1533 GLEAN promoter 90991 91990 1 + . ID=CGI_10012868; scaffold1533 GLEAN mRNA 91991 98571 1 + . ID=CGI_10012868; scaffold1533 WUBlastX DNA_Harbinger 94238 94450 76 + . . scaffold1533 WUBlastX DNA_Harbinger 94262 94432 78 + . . scaffold1533 WUBlastX LINE_CR1-L2 95240 95596 20 - . . scaffold1533 WUBlastX DNA_TcMar-Marin 98940 99476 32 - . . scaffold1533 WUBlastX DNA_TcMar-Marin 99547 99774 55 - . . scaffold1533 TRF Tandem_Repeat 102098 102131 68 + . . scaffold1533 TRF Tandem_Repeat 103384 104007 902 + . . scaffold1533 TRF Tandem_Repeat 104992 105389 575 + . . scaffold1533 TRF Tandem_Repeat 104992 105389 593 + . . scaffold1533 TRF Tandem_Repeat 109210 109757 576 + . . scaffold1533 TRF Tandem_Repeat 116262 116300 78 + . . scaffold1533 TRF Tandem_Repeat 119436 119566 217 + . . scaffold1533 TRF Tandem_Repeat 127319 127469 89 + . . scaffold1533 GLEAN promoter 131420 132419 1 + . ID=CGI_10012869; scaffold1533 GLEAN mRNA 132420 138063 1 + . ID=CGI_10012869; scaffold1533 GLEAN mRNA 138235 147128 0.999939 - . ID=CGI_10012870; scaffold1533 GLEAN promoter 147129 148128 0.999939 - . ID=CGI_10012870; scaffold1533 TRF Tandem_Repeat 147258 147380 76 + . . scaffold1533 GLEAN promoter 149362 150361 1 + . ID=CGI_10012871; scaffold1533 GLEAN mRNA 150362 163521 1 + . ID=CGI_10012871; scaffold1533 TRF Tandem_Repeat 152446 152493 51 + . . scaffold1533 TRF Tandem_Repeat 152448 152494 53 + . . scaffold1533 GLEAN mRNA 164497 169780 1 - . ID=CGI_10012872; scaffold1533 TRF Tandem_Repeat 168520 168552 57 + . . scaffold1533 GLEAN promoter 169781 170780 1 - . ID=CGI_10012872; scaffold1533 GLEAN mRNA 170668 171036 0.990832 - . ID=CGI_10012873; scaffold1533 GLEAN promoter 171037 172036 0.990832 - . ID=CGI_10012873; scaffold1533 TRF Tandem_Repeat 171511 171546 54 + . . scaffold1533 TRF Tandem_Repeat 195024 195067 88 + . . scaffold1533 WUBlastX LTR_DIRS 196838 197785 394 - . . scaffold1533 WUBlastX LINE_RTE-X 205747 205881 110 - . . scaffold1533 WUBlastX LINE_RTE-X 205747 205917 94 - . . scaffold1533 WUBlastX LINE_RTE-X 206018 206089 39 - . . scaffold1533 WUBlastX LINE_RTE-X 206070 206312 45 - . . scaffold1533 TRF Tandem_Repeat 206623 206944 405 + . . scaffold1533 TRF Tandem_Repeat 206993 207302 424 + . . scaffold1533 GLEAN mRNA 208436 208732 0.999372 - . ID=CGI_10012874; scaffold1533 GLEAN promoter 208733 209732 0.999372 - . ID=CGI_10012874; scaffold1533 GLEAN promoter 211127 212126 0.389864 + . ID=CGI_10012875; scaffold1533 GLEAN mRNA 212127 212848 0.389864 + . ID=CGI_10012875; scaffold1533 GLEAN promoter 214052 215051 0.857334 + . ID=CGI_10012876; scaffold1533 GLEAN mRNA 215052 232112 0.857334 + . ID=CGI_10012876; scaffold1533 TRF Tandem_Repeat 215570 215633 87 + . . scaffold1533 TRF Tandem_Repeat 215750 215793 54 + . . scaffold1533 TRF Tandem_Repeat 217679 217742 87 + . . scaffold1533 TRF Tandem_Repeat 219775 219838 87 + . . scaffold1533 TRF Tandem_Repeat 221871 221934 87 + . . scaffold1533 TRF Tandem_Repeat 223967 224030 87 + . . scaffold1533 TRF Tandem_Repeat 226063 226126 87 + . . scaffold1533 TRF Tandem_Repeat 226243 226286 54 + . . scaffold1533 TRF Tandem_Repeat 226403 226458 94 + . . scaffold1533 TRF Tandem_Repeat 237113 237161 98 + . . scaffold1533 TRF Tandem_Repeat 238115 238163 53 + . . scaffold1533 TRF Tandem_Repeat 241031 241076 92 + . . scaffold1533 TRF Tandem_Repeat 241672 241727 112 + . . scaffold1533 GLEAN promoter 242609 243608 0.272254 + . ID=CGI_10012877; scaffold1533 GLEAN mRNA 243609 253447 0.272254 + . ID=CGI_10012877; scaffold1533 TRF Tandem_Repeat 245869 246073 241 + . . scaffold1533 TRF Tandem_Repeat 247790 247841 50 + . . scaffold1533 TRF Tandem_Repeat 253199 253242 88 + . . scaffold1533 TRF Tandem_Repeat 254455 255310 1399 + . . scaffold1533 GLEAN mRNA 258171 271249 0.998878 - . ID=CGI_10012878; scaffold1533 GLEAN promoter 271250 272249 0.998878 - . ID=CGI_10012878; scaffold1533 GLEAN promoter 291265 292264 0.535578 + . ID=CGI_10012879; scaffold1533 GLEAN mRNA 292265 312647 0.535578 + . ID=CGI_10012879; scaffold1533 TRF Tandem_Repeat 294790 294828 69 + . . scaffold1533 GLEAN mRNA 316186 317715 0.558395 - . ID=CGI_10012880; scaffold1533 GLEAN promoter 317716 318715 0.558395 - . ID=CGI_10012880; scaffold1533 GLEAN promoter 320662 321661 0.702385 + . ID=CGI_10012881; scaffold1533 GLEAN mRNA 321662 336056 0.702385 + . ID=CGI_10012881; scaffold1533 WUBlastX LINE_RTE-BovB 341788 342015 66 - . . scaffold1533 WUBlastX LINE_RTE-BovB 342000 342125 49 - . . scaffold1534 TRF Tandem_Repeat 1 763 797 + . . scaffold1534 TRF Tandem_Repeat 5675 5705 53 + . . scaffold1534 WUBlastX LTR_Copia 13877 14692 417 + . . scaffold1534 WUBlastX LTR_Copia 14692 15489 231 + . . scaffold1534 TRF Tandem_Repeat 19420 19487 136 + . . scaffold1535 TRF Tandem_Repeat 532 1172 753 + . . scaffold1535 TRF Tandem_Repeat 9869 10017 154 + . . scaffold1535 TRF Tandem_Repeat 10044 10163 145 + . . scaffold1535 WUBlastX LINE_L1-Tx1 11695 12018 51 - . . scaffold1535 WUBlastX LINE_L1-Tx1 11842 12009 82 - . . scaffold1535 WUBlastX LINE_L1-Tx1 12020 12238 72 - . . scaffold1535 WUBlastX LINE_L1 12213 12365 82 - . . scaffold1535 WUBlastX LINE_L2 14260 14979 48 - . . scaffold1535 WUBlastX LINE_L1 14272 14856 69 - . . scaffold1535 WUBlastX LINE_Penelope 39630 40769 592 - . . scaffold1535 WUBlastX LINE_Penelope 40799 41473 242 - . . scaffold1535 WUBlastX LINE_Penelope 40853 41593 84 - . . scaffold1535 TRF Tandem_Repeat 48866 48891 52 + . . scaffold1535 TRF Tandem_Repeat 49393 49433 82 + . . scaffold1535 WUBlastX LINE_Penelope 49745 50032 56 - . . scaffold1535 WUBlastX LINE_Penelope 49841 50023 79 - . . scaffold1535 WUBlastX LINE_Penelope 50048 50551 55 + . . scaffold1535 WUBlastX LINE_Penelope 50072 50644 39 + . . scaffold1535 WUBlastX LINE_Penelope 50143 50406 78 + . . scaffold1535 TRF Tandem_Repeat 60886 61272 549 + . . scaffold1535 GLEAN mRNA 65624 65848 0.999372 - . ID=CGI_10005841; scaffold1535 GLEAN promoter 65849 66848 0.999372 - . ID=CGI_10005841; scaffold1535 GLEAN mRNA 66755 69289 1 - . ID=CGI_10005842; scaffold1535 GLEAN promoter 69290 70289 1 - . ID=CGI_10005842; scaffold1535 WUBlastX DNA_Harbinger 70200 71009 103 - . . scaffold1535 WUBlastX DNA_Harbinger 70200 70847 146 - . . scaffold1535 TRF Tandem_Repeat 73737 73764 56 + . . scaffold1535 TRF Tandem_Repeat 73868 73928 61 + . . scaffold1535 WUBlastX LTR_Gypsy 76980 77288 87 + . . scaffold1535 WUBlastX LTR_Gypsy 77073 77288 124 + . . scaffold1535 WUBlastX LTR_Gypsy 77073 77411 64 + . . scaffold1535 GLEAN mRNA 91570 94447 0.471026 - . ID=CGI_10005843; scaffold1535 GLEAN promoter 94448 95447 0.471026 - . ID=CGI_10005843; scaffold1535 GLEAN promoter 96053 97052 0.979657 + . ID=CGI_10005844; scaffold1535 GLEAN mRNA 97053 97358 0.979657 + . ID=CGI_10005844; scaffold1535 WUBlastX DNA_Maverick 99595 100056 152 - . . scaffold1535 WUBlastX DNA_Maverick 99694 100056 171 - . . scaffold1535 WUBlastX DNA_Maverick 100088 100648 350 - . . scaffold1535 WUBlastX DNA_Maverick 100581 101024 135 - . . scaffold1535 WUBlastX DNA_Maverick 100656 100949 147 - . . scaffold1535 WUBlastX DNA_Maverick 101019 101162 31 - . . scaffold1535 WUBlastX DNA_Maverick 101129 101491 202 - . . scaffold1535 GLEAN mRNA 101526 101912 0.999372 - . ID=CGI_10005845; scaffold1535 GLEAN promoter 101913 102912 0.999372 - . ID=CGI_10005845; scaffold1535 GLEAN mRNA 101940 102425 0.999372 - . ID=CGI_10005846; scaffold1535 GLEAN promoter 102426 103425 0.999372 - . ID=CGI_10005846; scaffold1535 WUBlastX DNA_Maverick 102778 103146 107 - . . scaffold1535 WUBlastX DNA_Maverick 102790 103062 132 - . . scaffold1535 WUBlastX DNA_Maverick 102793 103242 107 - . . scaffold1535 WUBlastX DNA_Maverick 103295 103717 72 - . . scaffold1535 WUBlastX DNA_Maverick 103391 103753 76 - . . scaffold1535 TRF Tandem_Repeat 104637 104666 60 + . . scaffold1535 WUBlastX DNA_Maverick 108291 108899 420 - . . scaffold1535 WUBlastX LINE_R2-Hero 112544 113095 172 - . . scaffold1535 WUBlastX LINE_R2-Hero 113100 113186 23 - . . scaffold1535 WUBlastX LINE_L2 124408 124893 107 + . . scaffold1535 WUBlastX LINE_L2 124896 126170 564 + . . scaffold1535 WUBlastX LINE_L2 126124 126426 221 + . . scaffold1535 TRF Tandem_Repeat 134276 134308 57 + . . scaffold1535 WUBlastX LINE_L2 135793 136098 84 + . . scaffold1535 WUBlastX LINE_CR1-L2 135844 136101 94 + . . scaffold1535 WUBlastX LINE_CR1 135934 136101 99 + . . scaffold1535 WUBlastX LINE_L2 135964 136098 104 + . . scaffold1535 WUBlastX LINE_L2 135964 136137 82 + . . scaffold1535 TRF Tandem_Repeat 136194 136412 201 + . . scaffold1535 TRF Tandem_Repeat 136194 136385 210 + . . scaffold1535 TRF Tandem_Repeat 137272 137590 320 + . . scaffold1535 TRF Tandem_Repeat 137272 137590 322 + . . scaffold1535 TRF Tandem_Repeat 137272 137590 286 + . . scaffold1536 GLEAN mRNA 1194 2251 1 - . ID=CGI_10004413; scaffold1536 GLEAN promoter 2252 3251 1 - . ID=CGI_10004413; scaffold1536 TRF Tandem_Repeat 3497 3528 64 + . . scaffold1536 TRF Tandem_Repeat 16853 16903 57 + . . scaffold1536 TRF Tandem_Repeat 18017 18051 70 + . . scaffold1536 TRF Tandem_Repeat 26192 26312 197 + . . scaffold1536 WUBlastX LTR_Gypsy 28881 29876 238 + . . scaffold1536 WUBlastX LTR_Gypsy 29058 31259 1703 + . . scaffold1536 TRF Tandem_Repeat 35304 35346 70 + . . scaffold1536 GLEAN mRNA 43049 50777 0.955167 - . ID=CGI_10004414; scaffold1536 GLEAN promoter 50778 51777 0.955167 - . ID=CGI_10004414; scaffold1536 WUBlastX LTR_Pao 52528 55530 2502 - . . scaffold1536 GLEAN promoter 68658 69657 0.779284 + . ID=CGI_10004415; scaffold1536 GLEAN mRNA 69658 89028 0.779284 + . ID=CGI_10004415; scaffold1536 TRF Tandem_Repeat 70098 70188 123 + . . scaffold1536 TRF Tandem_Repeat 74250 75329 1786 + . . scaffold1536 TRF Tandem_Repeat 78821 78853 50 + . . scaffold1536 TRF Tandem_Repeat 79974 80505 603 + . . scaffold1536 TRF Tandem_Repeat 82474 83420 1390 + . . scaffold1536 TRF Tandem_Repeat 84834 84873 62 + . . scaffold1536 GLEAN mRNA 91082 99071 0.998934 - . ID=CGI_10004416; scaffold1536 GLEAN promoter 99072 99581 0.998934 - . ID=CGI_10004416; scaffold1537 GLEAN promoter 1 1 0.999999 + . ID=CGI_10001150; scaffold1537 GLEAN mRNA 2 9370 0.999999 + . ID=CGI_10001150; scaffold1537 WUBlastX LINE_Penelope 8454 8597 20 + . . scaffold1537 WUBlastX LINE_Penelope 8581 8742 88 + . . scaffold1537 WUBlastX LINE_Penelope 8581 8853 78 + . . scaffold1537 WUBlastX LINE_Penelope 9039 9095 36 + . . scaffold1537 GLEAN mRNA 10615 15641 0.998312 - . ID=CGI_10001151; scaffold1537 GLEAN promoter 15642 15700 0.998312 - . ID=CGI_10001151; scaffold1538 TRF Tandem_Repeat 227 306 160 + . . scaffold1538 WUBlastX LINE_L1-Tx1 5337 5606 69 + . . scaffold1538 WUBlastX LINE_L1 5627 5806 22 + . . scaffold1538 TRF Tandem_Repeat 6170 6204 70 + . . scaffold1538 TRF Tandem_Repeat 11956 12069 124 + . . scaffold1538 TRF Tandem_Repeat 12893 13033 120 + . . scaffold1538 TRF Tandem_Repeat 19566 19592 54 + . . scaffold1538 WUBlastX LINE_L1-Tx1 21261 21371 48 + . . scaffold1538 WUBlastX LINE_L1-Tx1 21370 21837 39 + . . scaffold1538 WUBlastX LINE_L1 21400 21993 28 + . . scaffold1538 WUBlastX LINE_L2 25203 25445 34 - . . scaffold1538 WUBlastX LINE_L2 25430 25843 52 - . . scaffold1538 WUBlastX LINE_L2 25445 25765 64 - . . scaffold1538 TRF Tandem_Repeat 34356 34632 203 + . . scaffold1538 TRF Tandem_Repeat 34374 34616 166 + . . scaffold1538 TRF Tandem_Repeat 35080 35402 354 + . . scaffold1538 WUBlastX LTR_Gypsy 38241 38624 142 - . . scaffold1538 WUBlastX LTR_Gypsy 38310 38618 261 - . . scaffold1538 WUBlastX LTR_Gypsy 38621 41689 1394 - . . scaffold1538 WUBlastX LTR_Gypsy 38624 41020 1434 - . . scaffold1538 WUBlastX LTR_Gypsy 41700 41948 55 - . . scaffold1538 TRF Tandem_Repeat 48127 48180 51 + . . scaffold1538 TRF Tandem_Repeat 48132 48184 61 + . . scaffold1538 TRF Tandem_Repeat 57646 57672 54 + . . scaffold1538 TRF Tandem_Repeat 64280 64408 152 + . . scaffold1538 TRF Tandem_Repeat 64285 64486 147 + . . scaffold1538 TRF Tandem_Repeat 64485 64676 195 + . . scaffold1538 TRF Tandem_Repeat 71414 71542 152 + . . scaffold1538 TRF Tandem_Repeat 71419 71620 147 + . . scaffold1538 TRF Tandem_Repeat 71619 71810 195 + . . scaffold1538 TRF Tandem_Repeat 76177 76236 111 + . . scaffold1539 GLEAN mRNA 236 25904 0.740122 - . ID=CGI_10001569; scaffold1539 GLEAN promoter 25905 25949 0.740122 - . ID=CGI_10001569; scaffold154 TRF Tandem_Repeat 5874 6105 277 + . . scaffold154 TRF Tandem_Repeat 7984 8022 60 + . . scaffold154 TRF Tandem_Repeat 8214 8274 122 + . . scaffold154 TRF Tandem_Repeat 8478 8533 112 + . . scaffold154 GLEAN promoter 15566 16565 0.865656 + . ID=CGI_10004829; scaffold154 GLEAN mRNA 16566 17402 0.865656 + . ID=CGI_10004829; scaffold154 GLEAN mRNA 23857 47855 0.920299 - . ID=CGI_10004830; scaffold154 TRF Tandem_Repeat 36330 36357 56 + . . scaffold154 TRF Tandem_Repeat 36537 36624 108 + . . scaffold154 GLEAN promoter 36912 37911 0.734544 + . ID=CGI_10004831; scaffold154 GLEAN mRNA 37912 40044 0.734544 + . ID=CGI_10004831; scaffold154 GLEAN promoter 42289 43288 0.702385 + . ID=CGI_10004832; scaffold154 GLEAN mRNA 43289 54598 0.702385 + . ID=CGI_10004832; scaffold154 GLEAN promoter 47856 48855 0.920299 - . ID=CGI_10004830; scaffold154 TRF Tandem_Repeat 49590 49633 88 + . . scaffold154 TRF Tandem_Repeat 50822 50863 59 + . . scaffold154 TRF Tandem_Repeat 51036 51887 1510 + . . scaffold154 GLEAN mRNA 55540 66408 1 - . ID=CGI_10004833; scaffold154 WUBlastX DNA_Harbinger 56481 56666 25 - . . scaffold154 WUBlastX DNA_Harbinger 57655 57795 40 - . . scaffold154 TRF Tandem_Repeat 61506 61543 76 + . . scaffold154 TRF Tandem_Repeat 61633 61660 56 + . . scaffold154 GLEAN promoter 66409 67408 1 - . ID=CGI_10004833; scaffold154 GLEAN promoter 67395 68394 0.844002 + . ID=CGI_10004834; scaffold154 GLEAN mRNA 68395 83743 0.844002 + . ID=CGI_10004834; scaffold154 TRF Tandem_Repeat 74700 75709 1389 + . . scaffold154 GLEAN mRNA 83886 94070 0.999674 - . ID=CGI_10004835; scaffold154 TRF Tandem_Repeat 92073 92115 50 + . . scaffold154 TRF Tandem_Repeat 92073 92115 59 + . . scaffold154 TRF Tandem_Repeat 93568 93645 138 + . . scaffold154 GLEAN promoter 94071 95070 0.999674 - . ID=CGI_10004835; scaffold154 GLEAN mRNA 97207 97518 0.999955 - . ID=CGI_10004836; scaffold154 GLEAN promoter 97519 98518 0.999955 - . ID=CGI_10004836; scaffold154 TRF Tandem_Repeat 103641 103674 59 + . . scaffold154 TRF Tandem_Repeat 112187 112213 54 + . . scaffold1541 TRF Tandem_Repeat 962 988 54 + . . scaffold1541 TRF Tandem_Repeat 6300 6356 114 + . . scaffold1541 TRF Tandem_Repeat 6957 7007 102 + . . scaffold1541 TRF Tandem_Repeat 7005 7036 64 + . . scaffold1541 TRF Tandem_Repeat 9707 9735 58 + . . scaffold1541 TRF Tandem_Repeat 18236 18537 294 + . . scaffold1541 TRF Tandem_Repeat 18244 18537 329 + . . scaffold1541 GLEAN promoter 20231 21230 0.999675 + . ID=CGI_10017876; scaffold1541 GLEAN mRNA 21231 36409 0.999675 + . ID=CGI_10017876; scaffold1541 TRF Tandem_Repeat 22943 22969 54 + . . scaffold1541 WUBlastX DNA_TcMar-Tc1 34719 35621 252 - . . scaffold1541 GLEAN promoter 41655 42654 1 + . ID=CGI_10017877; scaffold1541 GLEAN mRNA 42655 43646 1 + . ID=CGI_10017877; scaffold1541 GLEAN mRNA 45231 51447 0.865984 - . ID=CGI_10017878; scaffold1541 TRF Tandem_Repeat 47300 47335 72 + . . scaffold1541 GLEAN promoter 51448 52447 0.865984 - . ID=CGI_10017878; scaffold1541 GLEAN promoter 54433 55432 0.992447 + . ID=CGI_10017879; scaffold1541 GLEAN mRNA 55433 64954 0.992447 + . ID=CGI_10017879; scaffold1541 GLEAN mRNA 65821 71290 0.990697 - . ID=CGI_10017880; scaffold1541 TRF Tandem_Repeat 67208 67263 112 + . . scaffold1541 TRF Tandem_Repeat 69705 69779 141 + . . scaffold1541 GLEAN promoter 71291 72290 0.990697 - . ID=CGI_10017880; scaffold1541 GLEAN mRNA 74266 103673 0.923273 - . ID=CGI_10017881; scaffold1541 TRF Tandem_Repeat 81439 81464 52 + . . scaffold1541 TRF Tandem_Repeat 81467 81595 124 + . . scaffold1541 TRF Tandem_Repeat 81474 81575 64 + . . scaffold1541 GLEAN promoter 103674 104673 0.923273 - . ID=CGI_10017881; scaffold1541 GLEAN promoter 106128 107127 1 + . ID=CGI_10017882; scaffold1541 GLEAN mRNA 107128 113332 1 + . ID=CGI_10017882; scaffold1541 TRF Tandem_Repeat 111391 111438 96 + . . scaffold1541 TRF Tandem_Repeat 112835 112920 93 + . . scaffold1541 GLEAN mRNA 120298 133125 0.670531 - . ID=CGI_10017883; scaffold1541 GLEAN promoter 133126 134125 0.670531 - . ID=CGI_10017883; scaffold1541 GLEAN mRNA 137776 151256 0.998719 - . ID=CGI_10017884; scaffold1541 TRF Tandem_Repeat 142186 142355 73 + . . scaffold1541 TRF Tandem_Repeat 142198 142262 53 + . . scaffold1541 TRF Tandem_Repeat 142243 142357 97 + . . scaffold1541 GLEAN promoter 151257 152256 0.998719 - . ID=CGI_10017884; scaffold1541 TRF Tandem_Repeat 152997 153044 96 + . . scaffold1541 GLEAN mRNA 155737 160589 1 - . ID=CGI_10017885; scaffold1541 GLEAN promoter 160590 161589 1 - . ID=CGI_10017885; scaffold1541 TRF Tandem_Repeat 164267 164309 77 + . . scaffold1541 GLEAN mRNA 178231 179328 0.69447 - . ID=CGI_10017886; scaffold1541 GLEAN promoter 179329 180328 0.69447 - . ID=CGI_10017886; scaffold1541 GLEAN mRNA 190584 196671 1 - . ID=CGI_10017887; scaffold1541 GLEAN promoter 196672 197671 1 - . ID=CGI_10017887; scaffold1541 TRF Tandem_Repeat 200607 200647 82 + . . scaffold1541 GLEAN mRNA 201379 234972 0.933811 - . ID=CGI_10017888; scaffold1541 GLEAN promoter 205343 206342 0.995858 + . ID=CGI_10017889; scaffold1541 TRF Tandem_Repeat 205490 205822 330 + . . scaffold1541 TRF Tandem_Repeat 205492 205735 245 + . . scaffold1541 GLEAN mRNA 206343 219894 0.995858 + . ID=CGI_10017889; scaffold1541 TRF Tandem_Repeat 214273 214341 138 + . . scaffold1541 TRF Tandem_Repeat 217111 217210 119 + . . scaffold1541 GLEAN promoter 221020 222019 0.981532 + . ID=CGI_10017890; scaffold1541 GLEAN mRNA 222020 224610 0.981532 + . ID=CGI_10017890; scaffold1541 WUBlastX LTR_ERV1 222611 223153 53 + . . scaffold1541 TRF Tandem_Repeat 228325 228362 76 + . . scaffold1541 TRF Tandem_Repeat 231543 231582 53 + . . scaffold1541 GLEAN promoter 234973 235972 0.933811 - . ID=CGI_10017888; scaffold1541 TRF Tandem_Repeat 254537 254585 98 + . . scaffold1541 TRF Tandem_Repeat 261720 261770 102 + . . scaffold1541 TRF Tandem_Repeat 262736 262764 58 + . . scaffold1541 TRF Tandem_Repeat 273756 273793 76 + . . scaffold1541 TRF Tandem_Repeat 273902 273940 78 + . . scaffold1541 TRF Tandem_Repeat 277819 277885 71 + . . scaffold1541 TRF Tandem_Repeat 278380 278434 56 + . . scaffold1541 TRF Tandem_Repeat 278380 278434 56 + . . scaffold1541 TRF Tandem_Repeat 278380 278434 65 + . . scaffold1541 TRF Tandem_Repeat 278612 278638 54 + . . scaffold1541 GLEAN promoter 280818 281817 0.619018 + . ID=CGI_10017891; scaffold1541 TRF Tandem_Repeat 280988 281054 89 + . . scaffold1541 GLEAN mRNA 281818 283131 0.619018 + . ID=CGI_10017891; scaffold1541 WUBlastX LINE_RTE-X 287095 287172 32 - . . scaffold1541 WUBlastX LINE_RTE-X 287178 287393 40 - . . scaffold1541 WUBlastX LINE_RTE-X 287654 287788 66 - . . scaffold1541 WUBlastX LINE_RTE-X 287769 288674 541 - . . scaffold1541 WUBlastX LINE_RTE-BovB 288351 288737 88 - . . scaffold1541 WUBlastX LINE_RTE-X 288737 289198 111 - . . scaffold1541 GLEAN promoter 291619 292618 0.398723 + . ID=CGI_10017892; scaffold1541 TRF Tandem_Repeat 292479 292574 151 + . . scaffold1541 GLEAN mRNA 292619 301567 0.398723 + . ID=CGI_10017892; scaffold1541 TRF Tandem_Repeat 293044 293076 66 + . . scaffold1541 TRF Tandem_Repeat 295154 295202 98 + . . scaffold1541 TRF Tandem_Repeat 295345 295423 151 + . . scaffold1541 GLEAN promoter 305772 306771 1 + . ID=CGI_10017893; scaffold1541 GLEAN mRNA 306772 310252 1 + . ID=CGI_10017893; scaffold1541 TRF Tandem_Repeat 308740 308802 117 + . . scaffold1541 GLEAN promoter 321059 322058 1 + . ID=CGI_10017894; scaffold1541 GLEAN mRNA 322059 325577 1 + . ID=CGI_10017894; scaffold1541 GLEAN promoter 330127 331126 0.984217 + . ID=CGI_10017895; scaffold1541 GLEAN mRNA 331127 368552 0.984217 + . ID=CGI_10017895; scaffold1541 TRF Tandem_Repeat 331626 331683 116 + . . scaffold1541 WUBlastX DNA_TcMar-Marin 338891 339055 29 + . . scaffold1541 WUBlastX DNA_TcMar-Marin 339221 339271 29 + . . scaffold1541 WUBlastX DNA_TcMar-Marin 339440 339610 29 + . . scaffold1541 TRF Tandem_Repeat 342196 342241 83 + . . scaffold1541 TRF Tandem_Repeat 343452 343509 116 + . . scaffold1541 TRF Tandem_Repeat 345458 345491 59 + . . scaffold1541 GLEAN mRNA 350143 362463 0.999533 - . ID=CGI_10017896; scaffold1541 GLEAN promoter 362464 363463 0.999533 - . ID=CGI_10017896; scaffold1541 GLEAN mRNA 363847 377632 0.999999 - . ID=CGI_10017897; scaffold1541 WUBlastX DNA_hAT-Tip100 375270 375413 75 - . . scaffold1541 GLEAN promoter 377633 378632 0.999999 - . ID=CGI_10017897; scaffold1541 TRF Tandem_Repeat 383638 383698 50 + . . scaffold1541 TRF Tandem_Repeat 384852 384940 72 + . . scaffold1541 TRF Tandem_Repeat 385013 385073 50 + . . scaffold1541 WUBlastX DNA_En-Spm 422284 422754 190 - . . scaffold1541 GLEAN promoter 435772 436771 0.98423 + . ID=CGI_10017898; scaffold1541 GLEAN mRNA 436772 436993 0.98423 + . ID=CGI_10017898; scaffold1541 GLEAN mRNA 437559 447793 0.998727 - . ID=CGI_10017899; scaffold1541 TRF Tandem_Repeat 446065 446098 68 + . . scaffold1541 TRF Tandem_Repeat 446343 446478 184 + . . scaffold1541 TRF Tandem_Repeat 446343 446478 156 + . . scaffold1541 TRF Tandem_Repeat 447046 447091 92 + . . scaffold1541 GLEAN promoter 447794 448793 0.998727 - . ID=CGI_10017899; scaffold1541 GLEAN promoter 456747 457746 0.765024 + . ID=CGI_10017900; scaffold1541 WUBlastX LINE_CR1 456958 457617 224 + . . scaffold1541 GLEAN mRNA 457747 458271 0.765024 + . ID=CGI_10017900; scaffold1541 WUBlastX LINE_L1-Tx1 458429 459541 382 + . . scaffold1541 WUBlastX LINE_L1-Tx1 459567 459989 171 + . . scaffold1541 WUBlastX LINE_L1 459618 459956 174 + . . scaffold1541 WUBlastX LINE_L1-Tx1 460808 460876 23 + . . scaffold1541 WUBlastX LINE_L1 460832 460876 26 + . . scaffold1541 WUBlastX LINE_L1 465804 466439 163 + . . scaffold1541 WUBlastX LINE_L1 465909 466481 264 + . . scaffold1541 WUBlastX LINE_L1 465981 466445 274 + . . scaffold1541 TRF Tandem_Repeat 466972 467068 126 + . . scaffold1541 WUBlastX DNA_hAT-Tip100 467864 468577 139 + . . scaffold1541 WUBlastX DNA_hAT 468735 469052 109 + . . scaffold1541 GLEAN promoter 468948 469947 0.864419 + . ID=CGI_10017901; scaffold1541 WUBlastX DNA_hAT 469188 469505 109 + . . scaffold1541 GLEAN mRNA 469948 471973 0.864419 + . ID=CGI_10017901; scaffold1541 WUBlastX DNA_hAT-Tip100 470187 470270 26 + . . scaffold1541 WUBlastX DNA_hAT-Tip100 471286 471387 27 + . . scaffold1541 WUBlastX DNA_hAT-Tip100 477557 477823 54 + . . scaffold1541 WUBlastX DNA_hAT-Tip100 477608 477841 174 + . . scaffold1541 WUBlastX DNA_hAT-Tip100 477629 477964 79 + . . scaffold1541 TRF Tandem_Repeat 479207 479242 54 + . . scaffold1541 WUBlastX LTR_Pao 485398 487125 348 + . . scaffold1541 WUBlastX LTR_Pao 485674 487869 1544 + . . scaffold1541 WUBlastX LTR_Pao 487866 488789 622 + . . scaffold1541 WUBlastX LTR_Gypsy 491488 491823 107 - . . scaffold1541 WUBlastX LTR_Gypsy 491488 491679 153 - . . scaffold1541 TRF Tandem_Repeat 522763 522797 54 + . . scaffold1543 TRF Tandem_Repeat 1777 1818 84 + . . scaffold1543 TRF Tandem_Repeat 7690 7727 76 + . . scaffold1543 TRF Tandem_Repeat 10142 10188 94 + . . scaffold1543 GLEAN mRNA 12787 15031 0.784835 - . ID=CGI_10003480; scaffold1543 TRF Tandem_Repeat 13323 13577 413 + . . scaffold1543 GLEAN promoter 15032 16031 0.784835 - . ID=CGI_10003480; scaffold1543 GLEAN promoter 24442 25441 0.890906 + . ID=CGI_10003481; scaffold1543 GLEAN mRNA 25442 28613 0.890906 + . ID=CGI_10003481; scaffold1543 WUBlastX LINE_I-Nimb 34026 34577 38 + . . scaffold1543 GLEAN promoter 39797 40796 0.999648 + . ID=CGI_10003482; scaffold1543 GLEAN mRNA 40797 48179 0.999648 + . ID=CGI_10003482; scaffold1543 TRF Tandem_Repeat 50195 50258 67 + . . scaffold1543 TRF Tandem_Repeat 50223 50257 61 + . . scaffold1543 GLEAN mRNA 52831 56563 0.963165 - . ID=CGI_10003483; scaffold1543 GLEAN promoter 56564 57563 0.963165 - . ID=CGI_10003483; scaffold1543 GLEAN mRNA 58582 63392 0.97254 - . ID=CGI_10003484; scaffold1543 GLEAN promoter 61305 62304 0.883594 + . ID=CGI_10003485; scaffold1543 GLEAN mRNA 62305 73668 0.883594 + . ID=CGI_10003485; scaffold1543 GLEAN promoter 63393 64392 0.97254 - . ID=CGI_10003484; scaffold1543 TRF Tandem_Repeat 70787 70928 193 + . . scaffold1543 TRF Tandem_Repeat 71790 71869 142 + . . scaffold1544 GLEAN promoter 205 1204 0.873026 + . ID=CGI_10001560; scaffold1544 GLEAN mRNA 1205 7316 0.873026 + . ID=CGI_10001560; scaffold1544 TRF Tandem_Repeat 2991 3100 96 + . . scaffold1544 TRF Tandem_Repeat 2991 3081 98 + . . scaffold1544 TRF Tandem_Repeat 9302 9343 50 + . . scaffold1544 TRF Tandem_Repeat 9306 9348 54 + . . scaffold1544 WUBlastX DNA_hAT 11324 11485 40 + . . scaffold1544 WUBlastX DNA_hAT-Ac 11605 11862 86 + . . scaffold1544 WUBlastX DNA_hAT-Ac 12172 12990 291 + . . scaffold1544 GLEAN promoter 13267 14266 0.321847 + . ID=CGI_10001561; scaffold1544 GLEAN mRNA 14267 21624 0.321847 + . ID=CGI_10001561; scaffold1544 TRF Tandem_Repeat 22704 24371 1935 + . . scaffold1546 GLEAN promoter 783 1782 1 + . ID=CGI_10010747; scaffold1546 GLEAN mRNA 1783 3776 1 + . ID=CGI_10010747; scaffold1546 WUBlastX LINE_L2 14465 14662 40 + . . scaffold1546 TRF Tandem_Repeat 21102 21143 68 + . . scaffold1546 GLEAN promoter 22344 23343 0.751553 + . ID=CGI_10010748; scaffold1546 GLEAN mRNA 23344 35372 0.751553 + . ID=CGI_10010748; scaffold1546 GLEAN promoter 35589 36588 0.999999 + . ID=CGI_10010749; scaffold1546 GLEAN mRNA 36589 37640 0.999999 + . ID=CGI_10010749; scaffold1546 GLEAN mRNA 44743 65069 0.999624 - . ID=CGI_10010750; scaffold1546 TRF Tandem_Repeat 54304 54446 259 + . . scaffold1546 GLEAN promoter 65070 66069 0.999624 - . ID=CGI_10010750; scaffold1546 GLEAN promoter 66047 67046 0.99956 + . ID=CGI_10010751; scaffold1546 GLEAN mRNA 67047 80771 0.99956 + . ID=CGI_10010751; scaffold1546 TRF Tandem_Repeat 72990 73036 60 + . . scaffold1546 TRF Tandem_Repeat 72997 73047 57 + . . scaffold1546 TRF Tandem_Repeat 73248 74175 1271 + . . scaffold1546 GLEAN promoter 80154 81153 1 + . ID=CGI_10010752; scaffold1546 TRF Tandem_Repeat 80335 80550 380 + . . scaffold1546 GLEAN mRNA 81154 82784 1 + . ID=CGI_10010752; scaffold1546 TRF Tandem_Repeat 83108 83893 1270 + . . scaffold1546 TRF Tandem_Repeat 87055 87119 100 + . . scaffold1546 TRF Tandem_Repeat 95924 96716 832 + . . scaffold1546 WUBlastX LTR_DIRS 96787 97131 259 + . . scaffold1546 WUBlastX LTR_DIRS 97134 97430 206 + . . scaffold1546 WUBlastX LTR_DIRS 97381 98304 557 + . . scaffold1546 WUBlastX LTR_DIRS 98288 99172 232 + . . scaffold1546 WUBlastX LTR_DIRS 98315 98740 284 + . . scaffold1546 WUBlastX LTR_Ngaro 153142 154260 858 - . . scaffold1546 WUBlastX LTR_Ngaro 154307 155074 94 - . . scaffold1546 WUBlastX LTR_Ngaro 154484 154960 211 - . . scaffold1546 WUBlastX LTR_Ngaro 154508 155272 140 - . . scaffold1546 WUBlastX LTR_Ngaro 154538 155107 198 - . . scaffold1546 WUBlastX DNA_Maverick 160429 160566 40 + . . scaffold1546 WUBlastX DNA_Maverick 160477 160566 46 + . . scaffold1546 WUBlastX DNA_Maverick 160617 160763 63 + . . scaffold1546 TRF Tandem_Repeat 175157 175247 146 + . . scaffold1546 TRF Tandem_Repeat 175213 175302 99 + . . scaffold1546 WUBlastX LTR_Ngaro 178821 179534 328 + . . scaffold1546 GLEAN promoter 180571 181570 0.999984 + . ID=CGI_10010754; scaffold1546 GLEAN promoter 181221 182220 0.988067 + . ID=CGI_10010755; scaffold1546 GLEAN mRNA 181571 181816 0.999984 + . ID=CGI_10010754; scaffold1546 WUBlastX DNA_Kolobok 182209 182379 26 + . . scaffold1546 GLEAN mRNA 182221 209655 0.988067 + . ID=CGI_10010755; scaffold1546 WUBlastX DNA_Kolobok 182524 182619 49 + . . scaffold1546 WUBlastX DNA_Kolobok 183219 183359 49 - . . scaffold1546 WUBlastX DNA_Kolobok 183480 183653 99 - . . scaffold1546 WUBlastX DNA_Kolobok 183507 183692 26 - . . scaffold1546 WUBlastX DNA_Kolobok 183719 184012 115 - . . scaffold1546 WUBlastX DNA_Kolobok 184078 184293 58 - . . scaffold1546 WUBlastX DNA_Kolobok 184117 184311 79 - . . scaffold1546 WUBlastX DNA_Kolobok 184454 184582 70 - . . scaffold1546 WUBlastX DNA_Kolobok 184533 184859 111 - . . scaffold1546 WUBlastX DNA_Kolobok 184894 184980 22 - . . scaffold1546 WUBlastX DNA_P 186408 186623 65 - . . scaffold1546 WUBlastX DNA_Helitron 190968 191624 43 + . . scaffold1546 WUBlastX RC_Helitron 191073 191624 88 + . . scaffold1546 WUBlastX RC_Helitron 191706 197198 3201 + . . scaffold1546 WUBlastX LINE_L2 196572 197321 22 + . . scaffold1546 WUBlastX DNA_TcMar-Tc1 204536 204760 28 - . . scaffold1546 TRF Tandem_Repeat 204976 205200 140 + . . scaffold1546 TRF Tandem_Repeat 205048 205169 118 + . . scaffold1546 WUBlastX DNA_Kolobok-IS4 217876 218229 133 - . . scaffold1546 WUBlastX DNA_IS4EU 218795 219139 40 - . . scaffold1546 WUBlastX DNA_IS4EU 218834 219124 57 - . . scaffold1546 WUBlastX DNA_TcMar-Fot1 246342 247076 171 + . . scaffold1546 WUBlastX DNA_TcMar-Fot1 246348 246962 218 + . . scaffold1546 TRF Tandem_Repeat 252460 252526 62 + . . scaffold1546 GLEAN mRNA 261594 273352 0.574717 - . ID=CGI_10010756; scaffold1546 TRF Tandem_Repeat 262370 262441 72 + . . scaffold1546 TRF Tandem_Repeat 262370 262446 57 + . . scaffold1546 TRF Tandem_Repeat 262370 262429 61 + . . scaffold1546 TRF Tandem_Repeat 265071 265117 94 + . . scaffold1546 TRF Tandem_Repeat 267066 267105 53 + . . scaffold1546 TRF Tandem_Repeat 268624 269032 250 + . . scaffold1546 GLEAN promoter 273353 274352 0.574717 - . ID=CGI_10010756; scaffold1546 TRF Tandem_Repeat 274492 274525 61 + . . scaffold1547 GLEAN mRNA 1169 9176 1 - . ID=CGI_10000762; scaffold1547 GLEAN promoter 9177 9667 1 - . ID=CGI_10000762; scaffold1548 WUBlastX LINE_L1-Tx1 599 1201 28 - . . scaffold1548 WUBlastX LINE_CR1 1393 2064 224 + . . scaffold1548 WUBlastX LINE_Penelope 5155 5508 152 - . . scaffold1548 WUBlastX LINE_Penelope 5525 5587 30 - . . scaffold1548 TRF Tandem_Repeat 6760 6810 102 + . . scaffold1548 TRF Tandem_Repeat 7744 7777 68 + . . scaffold1549 GLEAN promoter 1 934 0.996491 + . ID=CGI_10002844; scaffold1549 GLEAN mRNA 935 3544 0.996491 + . ID=CGI_10002844; scaffold1549 GLEAN mRNA 4210 11718 0.999526 - . ID=CGI_10002845; scaffold1549 WUBlastX LINE_L1-Tx1 7825 8334 96 + . . scaffold1549 WUBlastX LINE_L1-Tx1 8336 8719 33 + . . scaffold1549 TRF Tandem_Repeat 8731 8762 64 + . . scaffold1549 TRF Tandem_Repeat 11546 11581 72 + . . scaffold1549 GLEAN promoter 11719 12718 0.999526 - . ID=CGI_10002845; scaffold1549 TRF Tandem_Repeat 14740 14787 96 + . . scaffold1549 GLEAN mRNA 17205 17723 0.978995 - . ID=CGI_10002846; scaffold1549 GLEAN promoter 17724 18723 0.978995 - . ID=CGI_10002846; scaffold1549 GLEAN mRNA 18427 18699 0.997551 - . ID=CGI_10002847; scaffold1549 GLEAN promoter 18700 19699 0.997551 - . ID=CGI_10002847; scaffold1549 TRF Tandem_Repeat 22725 22790 132 + . . scaffold1549 GLEAN promoter 24838 25837 0.332467 + . ID=CGI_10002848; scaffold1549 GLEAN mRNA 25838 35243 0.332467 + . ID=CGI_10002848; scaffold1549 WUBlastX LINE_L2 47789 48073 160 - . . scaffold1549 WUBlastX LINE_CR1-L2 47798 48274 103 - . . scaffold1549 WUBlastX LINE_L2 49417 49968 223 - . . scaffold1549 WUBlastX LINE_L2 49432 50235 161 - . . scaffold1549 GLEAN promoter 51273 52272 0.996199 + . ID=CGI_10002849; scaffold1549 GLEAN mRNA 52273 53943 0.996199 + . ID=CGI_10002849; scaffold1549 WUBlastX LINE_RTE-X 55156 57480 722 - . . scaffold1549 WUBlastX LINE_RTE-X 55288 57069 737 - . . scaffold155 GLEAN mRNA 868 8083 0.364229 - . ID=CGI_10000747; scaffold155 GLEAN promoter 8084 9083 0.364229 - . ID=CGI_10000747; scaffold1550 WUBlastX LINE_L1 4002 4688 269 - . . scaffold1550 WUBlastX LINE_L1-Tx1 4143 4787 144 - . . scaffold1550 WUBlastX LINE_L1 4890 4931 23 - . . scaffold1551 GLEAN promoter 1 359 1 + . ID=CGI_10011466; scaffold1551 GLEAN mRNA 360 9050 1 + . ID=CGI_10011466; scaffold1551 GLEAN mRNA 13193 14545 0.64382 - . ID=CGI_10011467; scaffold1551 GLEAN promoter 14546 15545 0.64382 - . ID=CGI_10011467; scaffold1551 WUBlastX DNA_IS4EU 18104 18541 68 + . . scaffold1551 WUBlastX DNA_Kolobok-IS4 18522 19019 119 + . . scaffold1551 WUBlastX DNA_IS4EU 18594 19103 64 + . . scaffold1551 WUBlastX DNA_IS4EU 19075 19227 37 + . . scaffold1551 WUBlastX DNA_IS4EU 20573 20800 104 - . . scaffold1551 GLEAN mRNA 31659 33059 1 - . ID=CGI_10011468; scaffold1551 GLEAN promoter 33060 34059 1 - . ID=CGI_10011468; scaffold1551 GLEAN promoter 36121 37120 0.63673 + . ID=CGI_10011469; scaffold1551 GLEAN mRNA 37121 38055 0.63673 + . ID=CGI_10011469; scaffold1551 TRF Tandem_Repeat 45974 46017 88 + . . scaffold1551 WUBlastX LINE_RTE-BovB 46260 46634 205 - . . scaffold1551 WUBlastX LINE_RTE-BovB 46646 47323 508 - . . scaffold1551 WUBlastX LINE_L1 46658 47560 83 - . . scaffold1551 GLEAN promoter 47041 48040 0.263167 + . ID=CGI_10011471; scaffold1551 GLEAN mRNA 47951 49294 0.588989 - . ID=CGI_10011470; scaffold1551 GLEAN mRNA 48041 86336 0.263167 + . ID=CGI_10011471; scaffold1551 GLEAN promoter 49295 50294 0.588989 - . ID=CGI_10011470; scaffold1551 WUBlastX LTR_Gypsy-Cigr 54977 55156 71 - . . scaffold1551 WUBlastX LTR_Gypsy-Cigr 55022 55159 84 - . . scaffold1551 TRF Tandem_Repeat 58540 59203 1031 + . . scaffold1551 TRF Tandem_Repeat 61872 62195 447 + . . scaffold1551 TRF Tandem_Repeat 61921 62189 367 + . . scaffold1551 TRF Tandem_Repeat 66238 66273 72 + . . scaffold1551 WUBlastX LTR_Ngaro 72708 73511 147 + . . scaffold1551 WUBlastX LTR_Ngaro 72864 73511 199 + . . scaffold1551 WUBlastX LTR_Ngaro 72975 73748 93 + . . scaffold1551 WUBlastX LTR_Ngaro 73714 74142 165 + . . scaffold1551 WUBlastX LTR_Ngaro 74022 74393 200 + . . scaffold1551 WUBlastX LTR_Ngaro 74388 74726 232 + . . scaffold1551 WUBlastX LTR_Ngaro 74744 75319 279 + . . scaffold1551 WUBlastX LTR_Ngaro 75232 76029 280 + . . scaffold1551 WUBlastX LTR_Ngaro 76018 76131 24 + . . scaffold1551 TRF Tandem_Repeat 84106 84141 63 + . . scaffold1551 GLEAN mRNA 90140 91876 0.531615 - . ID=CGI_10011472; scaffold1551 GLEAN promoter 91877 92876 0.531615 - . ID=CGI_10011472; scaffold1551 WUBlastX LINE_RTE-X 102873 103043 56 - . . scaffold1551 WUBlastX LTR_Gypsy 105679 106239 118 + . . scaffold1551 WUBlastX LTR_Gypsy 105790 106338 28 + . . scaffold1551 WUBlastX LTR_Gypsy 106499 106900 50 + . . scaffold1551 WUBlastX LTR_Gypsy 106902 107201 22 + . . scaffold1551 WUBlastX LTR_Gypsy 106908 107138 28 + . . scaffold1551 WUBlastX LTR_Gypsy 107275 107769 120 + . . scaffold1551 WUBlastX LTR_Gypsy 107765 109177 816 + . . scaffold1551 WUBlastX LTR_Gypsy 109040 109258 34 + . . scaffold1551 WUBlastX LTR_Gypsy 109236 110447 219 + . . scaffold1551 WUBlastX LTR_Gypsy 109320 110672 162 + . . scaffold1551 GLEAN promoter 110282 111281 0.691569 + . ID=CGI_10011473; scaffold1551 WUBlastX LTR_Copia 110361 110732 37 + . . scaffold1551 GLEAN mRNA 111282 112373 0.691569 + . ID=CGI_10011473; scaffold1551 TRF Tandem_Repeat 114418 114719 310 + . . scaffold1551 TRF Tandem_Repeat 114434 114723 325 + . . scaffold1551 WUBlastX LTR_Ngaro 115381 115479 62 - . . scaffold1551 WUBlastX LTR_Ngaro 115499 116227 47 - . . scaffold1551 WUBlastX LTR_Ngaro 116230 116418 82 - . . scaffold1551 WUBlastX LTR_Ngaro 116257 116370 87 - . . scaffold1551 TRF Tandem_Repeat 117639 117750 125 + . . scaffold1551 TRF Tandem_Repeat 120520 121429 1502 + . . scaffold1551 WUBlastX LTR_Ngaro 123858 124169 33 - . . scaffold1551 WUBlastX LTR_Ngaro 123957 124154 94 - . . scaffold1551 TRF Tandem_Repeat 125491 125531 64 + . . scaffold1551 WUBlastX LINE_L1-Tx1 125951 128884 1300 - . . scaffold1551 WUBlastX LINE_L1-Tx1 125972 129706 1263 - . . scaffold1551 GLEAN mRNA 130008 130199 0.776736 - . ID=CGI_10011474; scaffold1551 WUBlastX LINE_RTE-BovB 130056 130142 26 - . . scaffold1551 GLEAN promoter 130072 131071 0.564223 + . ID=CGI_10011475; scaffold1551 GLEAN promoter 130200 131199 0.776736 - . ID=CGI_10011474; scaffold1551 GLEAN mRNA 131072 134535 0.564223 + . ID=CGI_10011475; scaffold1551 TRF Tandem_Repeat 133243 133284 84 + . . scaffold1551 TRF Tandem_Repeat 135436 135465 60 + . . scaffold1551 TRF Tandem_Repeat 135538 135577 80 + . . scaffold1551 TRF Tandem_Repeat 135649 135704 105 + . . scaffold1551 TRF Tandem_Repeat 138562 138664 206 + . . scaffold1551 WUBlastX LINE_RTE-X 139601 140371 177 - . . scaffold1551 WUBlastX LINE_RTE-X 139742 142222 766 - . . scaffold1551 WUBlastX LINE_RTE-X 142257 142385 53 - . . scaffold1551 TRF Tandem_Repeat 145105 145159 110 + . . scaffold1551 GLEAN mRNA 148906 150582 0.996158 - . ID=CGI_10011476; scaffold1551 GLEAN promoter 150583 151582 0.996158 - . ID=CGI_10011476; scaffold1551 GLEAN promoter 154031 155030 0.904447 + . ID=CGI_10011477; scaffold1551 GLEAN mRNA 155031 157361 0.904447 + . ID=CGI_10011477; scaffold1551 TRF Tandem_Repeat 156021 156118 189 + . . scaffold1551 TRF Tandem_Repeat 157399 157639 153 + . . scaffold1551 WUBlastX LTR_Gypsy 159073 159648 96 + . . scaffold1551 WUBlastX LTR_Gypsy 159079 159252 99 + . . scaffold1551 TRF Tandem_Repeat 160747 160776 53 + . . scaffold1551 WUBlastX LINE_L1 160802 161101 22 + . . scaffold1551 WUBlastX LINE_L1-Tx1 160862 161176 31 + . . scaffold1551 WUBlastX LINE_L1-Tx1 160865 161122 34 + . . scaffold1551 TRF Tandem_Repeat 163371 163426 103 + . . scaffold1551 GLEAN mRNA 168920 170596 0.999972 - . ID=CGI_10011478; scaffold1551 GLEAN promoter 170597 171596 0.999972 - . ID=CGI_10011478; scaffold1551 WUBlastX LTR_DIRS 176952 177794 186 + . . scaffold1551 WUBlastX LTR_DIRS 177252 177845 195 + . . scaffold1551 WUBlastX LTR_DIRS 177970 179007 276 + . . scaffold1551 WUBlastX LTR_DIRS 178069 179694 212 + . . scaffold1551 WUBlastX LTR_DIRS 179657 179929 37 + . . scaffold1551 WUBlastX LTR_DIRS 179791 180216 235 + . . scaffold1551 WUBlastX LTR_DIRS 180216 180737 182 + . . scaffold1551 TRF Tandem_Repeat 183658 183854 180 + . . scaffold1551 TRF Tandem_Repeat 184341 184402 115 + . . scaffold1551 TRF Tandem_Repeat 184470 184520 57 + . . scaffold1551 TRF Tandem_Repeat 191919 191965 85 + . . scaffold1551 TRF Tandem_Repeat 192901 192953 97 + . . scaffold1551 GLEAN mRNA 194543 196153 0.83621 - . ID=CGI_10011479; scaffold1551 GLEAN promoter 196154 197153 0.83621 - . ID=CGI_10011479; scaffold1551 WUBlastX DNA_TcMar-Fot1 211286 211669 76 + . . scaffold1551 WUBlastX DNA_TcMar-Fot1 211394 212212 107 + . . scaffold1551 WUBlastX DNA_TcMar-Fot1 211397 211804 152 + . . scaffold1551 TRF Tandem_Repeat 212679 212733 110 + . . scaffold1551 GLEAN mRNA 214002 217106 0.999999 - . ID=CGI_10011480; scaffold1551 TRF Tandem_Repeat 214123 214147 50 + . . scaffold1551 TRF Tandem_Repeat 215590 215630 82 + . . scaffold1551 GLEAN promoter 217107 218106 0.999999 - . ID=CGI_10011480; scaffold1551 WUBlastX LINE_L1-Tx1 222674 223309 115 - . . scaffold1551 WUBlastX LINE_L1-Tx1 223297 223635 66 - . . scaffold1551 WUBlastX LINE_L1-Tx1 223688 223846 54 - . . scaffold1551 WUBlastX LINE_L1-Tx1 223800 225023 686 - . . scaffold1551 WUBlastX LINE_L1-Tx1 225037 226431 651 - . . scaffold1551 GLEAN promoter 227479 228478 0.966402 + . ID=CGI_10011481; scaffold1551 GLEAN mRNA 228479 243361 0.966402 + . ID=CGI_10011481; scaffold1551 GLEAN mRNA 235305 248542 0.417664 - . ID=CGI_10011482; scaffold1551 TRF Tandem_Repeat 243943 244810 1164 + . . scaffold1551 TRF Tandem_Repeat 245696 245773 156 + . . scaffold1551 GLEAN promoter 248543 249542 0.417664 - . ID=CGI_10011482; scaffold1551 TRF Tandem_Repeat 254128 254171 88 + . . scaffold1551 TRF Tandem_Repeat 267161 267382 117 + . . scaffold1551 TRF Tandem_Repeat 277314 277369 69 + . . scaffold1551 TRF Tandem_Repeat 277315 277360 76 + . . scaffold1551 WUBlastX LTR_Gypsy 278239 282216 2060 - . . scaffold1551 WUBlastX LTR_Gypsy 281155 282441 236 - . . scaffold1551 GLEAN promoter 284266 285265 1 + . ID=CGI_10011483; scaffold1551 GLEAN mRNA 285266 291658 1 + . ID=CGI_10011483; scaffold1551 TRF Tandem_Repeat 286102 286139 76 + . . scaffold1553 TRF Tandem_Repeat 1128 3191 251 + . . scaffold1553 TRF Tandem_Repeat 1140 1387 193 + . . scaffold1553 TRF Tandem_Repeat 1480 1796 116 + . . scaffold1553 TRF Tandem_Repeat 1526 1922 111 + . . scaffold1553 TRF Tandem_Repeat 1966 2242 127 + . . scaffold1553 GLEAN promoter 2198 3197 0.937799 + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 2270 2406 87 + . . scaffold1553 TRF Tandem_Repeat 2308 2531 167 + . . scaffold1553 TRF Tandem_Repeat 2347 2533 95 + . . scaffold1553 TRF Tandem_Repeat 2678 3193 223 + . . scaffold1553 GLEAN mRNA 3198 29329 0.937799 + . ID=CGI_10005358; scaffold1553 TRF Tandem_Repeat 3727 3843 95 + . . scaffold1553 GLEAN mRNA 15234 30449 0.997897 - . ID=CGI_10005359; scaffold1553 TRF Tandem_Repeat 20953 20988 72 + . . scaffold1553 TRF Tandem_Repeat 24834 24882 98 + . . scaffold1553 GLEAN promoter 30450 31449 0.997897 - . ID=CGI_10005359; scaffold1553 TRF Tandem_Repeat 31177 31244 136 + . . scaffold1553 TRF Tandem_Repeat 32815 32856 66 + . . scaffold1553 GLEAN mRNA 33686 33988 0.481188 - . ID=CGI_10005360; scaffold1553 GLEAN promoter 33989 34988 0.481188 - . ID=CGI_10005360; scaffold1553 GLEAN promoter 35197 36196 1 + . ID=CGI_10005361; scaffold1553 GLEAN mRNA 36197 43801 1 + . ID=CGI_10005361; scaffold1553 TRF Tandem_Repeat 46122 46177 105 + . . scaffold1553 GLEAN mRNA 56711 57966 0.999797 - . ID=CGI_10005362; scaffold1553 GLEAN promoter 57967 58966 0.999797 - . ID=CGI_10005362; scaffold1553 TRF Tandem_Repeat 59873 59935 72 + . . scaffold1553 TRF Tandem_Repeat 59873 59933 77 + . . scaffold1553 TRF Tandem_Repeat 59875 59905 53 + . . scaffold1553 TRF Tandem_Repeat 59895 59935 73 + . . scaffold1553 WUBlastX LINE_RTE-X 61291 62052 53 - . . scaffold1553 WUBlastX LINE_RTE-X 61405 62349 52 - . . scaffold1553 WUBlastX LINE_RTE-X 62345 62533 28 - . . scaffold1553 WUBlastX LINE_RTE-X 62351 62458 35 - . . scaffold1553 WUBlastX LINE_RTE-X 62357 62446 40 - . . scaffold1553 TRF Tandem_Repeat 62806 62852 94 + . . scaffold1553 WUBlastX DNA_IS4EU 72657 73328 395 - . . scaffold1553 WUBlastX DNA_Kolobok-IS4 73541 73768 27 - . . scaffold1553 WUBlastX DNA_IS4EU 73595 73729 45 - . . scaffold1553 GLEAN mRNA 73907 74723 0.759666 - . ID=CGI_10005363; scaffold1553 WUBlastX DNA_IS4EU 74412 74723 51 - . . scaffold1553 GLEAN promoter 74724 75723 0.759666 - . ID=CGI_10005363; scaffold1553 GLEAN promoter 82138 83137 1 + . ID=CGI_10005365; scaffold1553 GLEAN mRNA 83138 84655 1 + . ID=CGI_10005365; scaffold1553 TRF Tandem_Repeat 84007 84064 55 + . . scaffold1553 TRF Tandem_Repeat 85132 85185 55 + . . scaffold1554 GLEAN promoter 1 976 0.529783 + . ID=CGI_10017354; scaffold1554 GLEAN mRNA 977 22779 0.529783 + . ID=CGI_10017354; scaffold1554 WUBlastX LTR_Gypsy 4700 6520 1113 - . . scaffold1554 WUBlastX LTR_Gypsy 6254 6574 38 - . . scaffold1554 WUBlastX LTR_Gypsy 6455 6607 23 - . . scaffold1554 TRF Tandem_Repeat 7376 7883 404 + . . scaffold1554 TRF Tandem_Repeat 11938 11976 60 + . . scaffold1554 TRF Tandem_Repeat 11942 11985 52 + . . scaffold1554 TRF Tandem_Repeat 20250 20308 118 + . . scaffold1554 GLEAN mRNA 20487 35985 0.999765 - . ID=CGI_10017355; scaffold1554 TRF Tandem_Repeat 29964 30722 1167 + . . scaffold1554 TRF Tandem_Repeat 30204 30644 98 + . . scaffold1554 GLEAN promoter 35986 36985 0.999765 - . ID=CGI_10017355; scaffold1554 WUBlastX DNA_Kolobok-Hyd 54407 54526 28 - . . scaffold1554 GLEAN mRNA 55077 66633 0.275944 - . ID=CGI_10017356; scaffold1554 WUBlastX DNA_Kolobok-Hyd 55373 55843 44 - . . scaffold1554 WUBlastX DNA_Kolobok-Hyd 55490 55843 49 - . . scaffold1554 WUBlastX DNA_Kolobok-Hyd 56561 56698 30 - . . scaffold1554 TRF Tandem_Repeat 56930 57000 142 + . . scaffold1554 GLEAN promoter 66634 67633 0.275944 - . ID=CGI_10017356; scaffold1554 TRF Tandem_Repeat 69681 69710 60 + . . scaffold1554 GLEAN mRNA 73118 75674 0.972908 - . ID=CGI_10017357; scaffold1554 GLEAN promoter 75675 76674 0.972908 - . ID=CGI_10017357; scaffold1554 TRF Tandem_Repeat 78762 78811 55 + . . scaffold1554 TRF Tandem_Repeat 79204 79268 130 + . . scaffold1554 WUBlastX DNA_hAT-hATw 81385 81549 27 + . . scaffold1554 WUBlastX DNA_hAT-hATw 82036 82611 218 + . . scaffold1554 WUBlastX DNA_hAT-hATw 82616 82825 50 + . . scaffold1554 WUBlastX LINE_RTE-X 82719 83183 120 - . . scaffold1554 WUBlastX LINE_RTE-BovB 83028 83219 53 - . . scaffold1554 WUBlastX LINE_RTE-X 83218 83736 131 - . . scaffold1554 WUBlastX LINE_RTE-X 83428 83736 150 - . . scaffold1554 WUBlastX LINE_L2 83461 83907 83 - . . scaffold1554 GLEAN mRNA 84456 84665 0.999372 - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_CR1-L2 84525 84647 41 - . . scaffold1554 WUBlastX LINE_L2 84557 84949 22 - . . scaffold1554 WUBlastX LINE_L2 84623 84868 34 - . . scaffold1554 GLEAN promoter 84666 85665 0.999372 - . ID=CGI_10017358; scaffold1554 WUBlastX LINE_L2 84939 85151 28 - . . scaffold1554 WUBlastX LINE_CR1-L2 84939 85022 55 - . . scaffold1554 WUBlastX LINE_L2 84939 85043 51 - . . scaffold1554 GLEAN mRNA 85635 107228 0.541994 - . ID=CGI_10017359; scaffold1554 TRF Tandem_Repeat 94719 94748 60 + . . scaffold1554 GLEAN promoter 102559 103558 0.860594 + . ID=CGI_10017360; scaffold1554 GLEAN mRNA 103559 116816 0.860594 + . ID=CGI_10017360; scaffold1554 GLEAN promoter 107229 108228 0.541994 - . ID=CGI_10017359; scaffold1554 TRF Tandem_Repeat 109328 109497 202 + . . scaffold1554 GLEAN promoter 116347 117346 0.990752 + . ID=CGI_10017361; scaffold1554 GLEAN mRNA 117347 124188 0.990752 + . ID=CGI_10017361; scaffold1554 TRF Tandem_Repeat 128003 128144 140 + . . scaffold1554 TRF Tandem_Repeat 130544 130621 156 + . . scaffold1554 GLEAN promoter 131574 132573 0.721842 + . ID=CGI_10017362; scaffold1554 GLEAN mRNA 132574 146511 0.721842 + . ID=CGI_10017362; scaffold1554 TRF Tandem_Repeat 145148 145396 171 + . . scaffold1554 TRF Tandem_Repeat 145199 145690 305 + . . scaffold1554 TRF Tandem_Repeat 145477 145733 187 + . . scaffold1554 GLEAN mRNA 151563 153047 1 - . ID=CGI_10017363; scaffold1554 TRF Tandem_Repeat 151819 151897 135 + . . scaffold1554 TRF Tandem_Repeat 152672 152762 83 + . . scaffold1554 GLEAN promoter 153048 154047 1 - . ID=CGI_10017363; scaffold1554 GLEAN mRNA 154634 155946 0.999999 - . ID=CGI_10017364; scaffold1554 GLEAN promoter 155947 156946 0.999999 - . ID=CGI_10017364; scaffold1554 TRF Tandem_Repeat 155976 156005 51 + . . scaffold1554 TRF Tandem_Repeat 159219 159269 93 + . . scaffold1554 TRF Tandem_Repeat 162039 162074 72 + . . scaffold1554 GLEAN mRNA 162281 165601 0.989795 - . ID=CGI_10017365; scaffold1554 GLEAN promoter 165602 166601 0.989795 - . ID=CGI_10017365; scaffold1554 TRF Tandem_Repeat 165691 165734 88 + . . scaffold1554 TRF Tandem_Repeat 167189 167228 62 + . . scaffold1554 TRF Tandem_Repeat 174806 174857 104 + . . scaffold1554 TRF Tandem_Repeat 176021 176069 98 + . . scaffold1554 WUBlastX LINE_Proto2 203578 204879 158 - . . scaffold1554 WUBlastX LINE_Proto2 204976 205521 28 - . . scaffold1554 WUBlastX LINE_Proto2 205018 205470 43 - . . scaffold1554 WUBlastX LINE_Proto2 205021 205233 68 - . . scaffold1554 TRF Tandem_Repeat 212431 212512 146 + . . scaffold1554 TRF Tandem_Repeat 230987 231055 138 + . . scaffold1554 TRF Tandem_Repeat 234581 234615 70 + . . scaffold1554 GLEAN promoter 239225 240224 0.999996 + . ID=CGI_10017366; scaffold1554 GLEAN mRNA 240225 241877 0.999996 + . ID=CGI_10017366; scaffold1554 WUBlastX DNA_hAT 240390 240533 29 + . . scaffold1554 GLEAN promoter 240966 241965 0.987181 + . ID=CGI_10017367; scaffold1554 GLEAN mRNA 241966 254282 0.987181 + . ID=CGI_10017367; scaffold1554 TRF Tandem_Repeat 262435 262476 84 + . . scaffold1554 TRF Tandem_Repeat 265982 266245 186 + . . scaffold1554 TRF Tandem_Repeat 266078 266253 177 + . . scaffold1554 TRF Tandem_Repeat 273035 273141 178 + . . scaffold1554 WUBlastX RC_Helitron 273396 273626 38 + . . scaffold1554 TRF Tandem_Repeat 304191 304269 113 + . . scaffold1554 WUBlastX LTR_Ngaro 311794 312060 187 + . . scaffold1554 WUBlastX LTR_Ngaro 312060 312512 64 + . . scaffold1554 WUBlastX LTR_Ngaro 312159 312512 72 + . . scaffold1554 WUBlastX LTR_Ngaro 312515 312781 75 + . . scaffold1554 GLEAN mRNA 314550 318225 0.998631 - . ID=CGI_10017368; scaffold1554 GLEAN promoter 318226 319225 0.998631 - . ID=CGI_10017368; scaffold1554 TRF Tandem_Repeat 321049 321077 58 + . . scaffold1554 GLEAN mRNA 321127 341182 0.173332 - . ID=CGI_10017369; scaffold1554 TRF Tandem_Repeat 326693 326936 197 + . . scaffold1554 TRF Tandem_Repeat 339014 339054 82 + . . scaffold1554 GLEAN promoter 341183 342182 0.173332 - . ID=CGI_10017369; scaffold1554 TRF Tandem_Repeat 341595 341695 75 + . . scaffold1554 TRF Tandem_Repeat 341606 341695 108 + . . scaffold1554 WUBlastX LTR_Gypsy 370749 371363 105 - . . scaffold1554 WUBlastX LTR_Gypsy 370899 371519 236 - . . scaffold1554 WUBlastX LTR_Gypsy 370899 371387 269 - . . scaffold1554 WUBlastX LTR_Gypsy 371617 372102 183 - . . scaffold1554 WUBlastX LTR_Gypsy 371617 372198 89 - . . scaffold1554 WUBlastX LTR_Gypsy 372213 372314 27 - . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 373599 373955 179 - . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 373958 374125 79 - . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 374101 375858 908 - . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 375867 376061 207 - . . scaffold1554 WUBlastX LTR_Gypsy 375888 376121 24 - . . scaffold1554 WUBlastX LTR_Gypsy 376115 376216 42 - . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 376256 376411 25 - . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 376298 376423 62 - . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 376428 376910 387 - . . scaffold1554 WUBlastX LTR_Gypsy-Troyk 376793 377047 142 - . . scaffold1554 TRF Tandem_Repeat 388056 388089 68 + . . scaffold1554 TRF Tandem_Repeat 388323 388347 50 + . . scaffold1554 TRF Tandem_Repeat 389172 389221 54 + . . scaffold1554 GLEAN promoter 397282 398281 0.924957 + . ID=CGI_10017370; scaffold1554 GLEAN mRNA 398282 424620 0.924957 + . ID=CGI_10017370; scaffold1554 TRF Tandem_Repeat 406700 406733 52 + . . scaffold1554 TRF Tandem_Repeat 417481 417544 121 + . . scaffold1554 TRF Tandem_Repeat 418887 419104 391 + . . scaffold1554 TRF Tandem_Repeat 422315 422518 125 + . . scaffold1554 TRF Tandem_Repeat 423931 423956 52 + . . scaffold1554 TRF Tandem_Repeat 428948 429172 188 + . . scaffold1554 TRF Tandem_Repeat 428948 429179 218 + . . scaffold1554 TRF Tandem_Repeat 431744 431799 112 + . . scaffold1554 TRF Tandem_Repeat 434164 434413 308 + . . scaffold1554 TRF Tandem_Repeat 434454 434572 112 + . . scaffold1554 TRF Tandem_Repeat 435584 435697 112 + . . scaffold1554 GLEAN promoter 443125 444124 0.977529 + . ID=CGI_10017371; scaffold1554 GLEAN mRNA 444125 445753 0.977529 + . ID=CGI_10017371; scaffold1554 WUBlastX LINE_L1-Tx1 451783 452544 172 + . . scaffold1554 GLEAN promoter 453897 454896 0.999997 + . ID=CGI_10017372; scaffold1554 GLEAN mRNA 454897 455319 0.999997 + . ID=CGI_10017372; scaffold1554 GLEAN mRNA 456259 456489 0.59015 - . ID=CGI_10017373; scaffold1554 GLEAN promoter 456490 457489 0.59015 - . ID=CGI_10017373; scaffold1554 GLEAN promoter 468041 469040 0.487802 + . ID=CGI_10017374; scaffold1554 GLEAN mRNA 469041 471591 0.487802 + . ID=CGI_10017374; scaffold1554 GLEAN promoter 474769 475768 0.34149 + . ID=CGI_10017375; scaffold1554 GLEAN mRNA 475769 486188 0.34149 + . ID=CGI_10017375; scaffold1554 GLEAN promoter 485431 486430 0.994589 + . ID=CGI_10017376; scaffold1554 WUBlastX LINE_L1 486039 486419 61 + . . scaffold1554 WUBlastX LINE_L2 486084 486398 63 + . . scaffold1554 WUBlastX LINE_L2 486123 486359 68 + . . scaffold1554 GLEAN mRNA 486431 486892 0.994589 + . ID=CGI_10017376; scaffold1554 WUBlastX LINE_L1-Tx1 488073 488888 407 + . . scaffold1554 WUBlastX LINE_L1-Tx1 488843 489532 226 + . . scaffold1554 TRF Tandem_Repeat 492610 492638 58 + . . scaffold1554 GLEAN mRNA 493576 498084 0.999995 - . ID=CGI_10017377; scaffold1554 GLEAN promoter 498085 499084 0.999995 - . ID=CGI_10017377; scaffold1554 WUBlastX LTR_Gypsy-Cigr 499152 499955 39 + . . scaffold1554 WUBlastX LTR_Gypsy 499305 499955 106 + . . scaffold1554 WUBlastX LTR_Gypsy 500014 500103 28 + . . scaffold1555 GLEAN promoter 7028 8027 1 + . ID=CGI_10001266; scaffold1555 GLEAN mRNA 8028 8342 1 + . ID=CGI_10001266; scaffold1555 GLEAN promoter 9732 10731 0.999668 + . ID=CGI_10001267; scaffold1555 GLEAN mRNA 10732 16070 0.999668 + . ID=CGI_10001267; scaffold1556 GLEAN mRNA 48 5520 1 - . ID=CGI_10010471; scaffold1556 GLEAN promoter 5521 6520 1 - . ID=CGI_10010471; scaffold1556 TRF Tandem_Repeat 60613 60699 104 + . . scaffold1556 TRF Tandem_Repeat 67515 67571 114 + . . scaffold1556 GLEAN mRNA 70111 71475 1 - . ID=CGI_10010472; scaffold1556 TRF Tandem_Repeat 70299 70333 70 + . . scaffold1556 GLEAN promoter 71476 72475 1 - . ID=CGI_10010472; scaffold1556 TRF Tandem_Repeat 77957 78008 59 + . . scaffold1556 TRF Tandem_Repeat 77966 78015 55 + . . scaffold1556 TRF Tandem_Repeat 78039 79164 1773 + . . scaffold1556 WUBlastX LINE_RTE-X 87360 87554 28 - . . scaffold1556 WUBlastX LINE_RTE-X 87420 87551 44 - . . scaffold1556 WUBlastX LTR_Ngaro 89229 89735 194 - . . scaffold1556 WUBlastX LTR_Ngaro 89740 90054 154 - . . scaffold1556 WUBlastX LTR_Ngaro 89982 90509 322 - . . scaffold1556 WUBlastX LTR_Ngaro 90445 90723 77 - . . scaffold1556 WUBlastX LTR_Ngaro 90908 91450 115 - . . scaffold1556 WUBlastX LTR_Ngaro 91052 91501 225 - . . scaffold1556 WUBlastX LINE_RTE-BovB 92818 93006 96 - . . scaffold1556 WUBlastX LINE_RTE-BovB 92818 93045 85 - . . scaffold1556 GLEAN mRNA 98989 101989 0.999916 - . ID=CGI_10010473; scaffold1556 GLEAN promoter 100999 101998 1 + . ID=CGI_10010474; scaffold1556 WUBlastX LINE_RTE-X 101369 101746 53 - . . scaffold1556 GLEAN promoter 101990 102989 0.999916 - . ID=CGI_10010473; scaffold1556 GLEAN mRNA 101999 103041 1 + . ID=CGI_10010474; scaffold1556 TRF Tandem_Repeat 114803 114829 54 + . . scaffold1556 WUBlastX LINE_RTE-X 132937 134361 272 - . . scaffold1556 WUBlastX LINE_RTE-X 133159 134358 293 - . . scaffold1556 GLEAN mRNA 170803 171600 0.965893 - . ID=CGI_10010475; scaffold1556 GLEAN promoter 171601 172600 0.965893 - . ID=CGI_10010475; scaffold1556 TRF Tandem_Repeat 173809 173862 63 + . . scaffold1556 WUBlastX LINE_RTE-X 178682 179020 103 - . . scaffold1556 WUBlastX LINE_RTE-X 178742 179215 103 - . . scaffold1556 WUBlastX LINE_RTE-X 178748 179020 132 - . . scaffold1556 TRF Tandem_Repeat 179345 179411 80 + . . scaffold1556 TRF Tandem_Repeat 187795 187884 85 + . . scaffold1556 GLEAN mRNA 188925 217260 0.600311 - . ID=CGI_10010476; scaffold1556 TRF Tandem_Repeat 214457 214518 97 + . . scaffold1556 GLEAN promoter 217261 218260 0.600311 - . ID=CGI_10010476; scaffold1556 TRF Tandem_Repeat 218185 218313 77 + . . scaffold1556 TRF Tandem_Repeat 219496 219529 68 + . . scaffold1556 TRF Tandem_Repeat 219693 219729 74 + . . scaffold1556 TRF Tandem_Repeat 219925 219960 72 + . . scaffold1556 TRF Tandem_Repeat 220071 220106 72 + . . scaffold1556 TRF Tandem_Repeat 221212 221389 62 + . . scaffold1556 WUBlastX LTR_Gypsy 231772 232164 38 - . . scaffold1556 TRF Tandem_Repeat 233293 233747 476 + . . scaffold1556 TRF Tandem_Repeat 233339 233743 465 + . . scaffold1556 WUBlastX LTR_ERV1 240646 240852 25 + . . scaffold1556 WUBlastX LINE_L1-Tx1 251537 252685 413 - . . scaffold1556 GLEAN promoter 252099 253098 1 + . ID=CGI_10010477; scaffold1556 GLEAN mRNA 253099 254577 1 + . ID=CGI_10010477; scaffold1556 GLEAN mRNA 261229 263899 0.481266 - . ID=CGI_10010478; scaffold1556 TRF Tandem_Repeat 262882 263391 804 + . . scaffold1556 GLEAN promoter 263900 263922 0.481266 - . ID=CGI_10010478; scaffold1558 GLEAN promoter 1192 2191 1 + . ID=CGI_10004092; scaffold1558 TRF Tandem_Repeat 1936 1969 68 + . . scaffold1558 GLEAN mRNA 2192 4793 1 + . ID=CGI_10004092; scaffold1558 WUBlastX DNA_Zator 10306 10392 40 - . . scaffold1558 WUBlastX DNA_Zator 10380 10928 287 - . . scaffold1558 WUBlastX LINE_CR1 13861 14052 29 - . . scaffold1558 WUBlastX LINE_L2 13891 14466 79 - . . scaffold1558 WUBlastX LINE_L2 14123 14392 92 - . . scaffold1558 WUBlastX LINE_L2 14871 15047 21 - . . scaffold1558 TRF Tandem_Repeat 23192 23257 71 + . . scaffold1558 TRF Tandem_Repeat 23195 23256 63 + . . scaffold1558 TRF Tandem_Repeat 23423 23476 108 + . . scaffold1558 TRF Tandem_Repeat 24353 24534 201 + . . scaffold1558 TRF Tandem_Repeat 25584 25642 118 + . . scaffold1558 GLEAN mRNA 27950 29578 0.836235 - . ID=CGI_10004093; scaffold1558 GLEAN promoter 29579 30578 0.836235 - . ID=CGI_10004093; scaffold1558 GLEAN mRNA 34398 73907 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX LINE_L1-Tx1 38105 38251 49 - . . scaffold1558 WUBlastX LINE_L1 40501 40854 100 - . . scaffold1558 WUBlastX LINE_L1-Tx1 40901 41203 33 - . . scaffold1558 WUBlastX LINE_L1-Tx1 41047 41346 34 - . . scaffold1558 WUBlastX LINE_L1 41102 41233 59 - . . scaffold1558 WUBlastX LINE_L1 41203 41352 65 - . . scaffold1558 WUBlastX LINE_L1-Tx1 41203 41394 57 - . . scaffold1558 WUBlastX LINE_L1-Tx1 41203 41463 53 - . . scaffold1558 WUBlastX LINE_L1-Tx1 41366 41689 22 - . . scaffold1558 WUBlastX LINE_L1 41701 41799 52 - . . scaffold1558 WUBlastX LINE_L1 41713 41853 37 - . . scaffold1558 TRF Tandem_Repeat 47484 47520 74 + . . scaffold1558 TRF Tandem_Repeat 51630 51716 129 + . . scaffold1558 TRF Tandem_Repeat 54772 54833 124 + . . scaffold1558 WUBlastX LINE_L1-Tx1 61497 61784 59 + . . scaffold1558 WUBlastX LINE_L1-Tx1 61596 61784 71 + . . scaffold1558 GLEAN promoter 73908 74907 0.517269 - . ID=CGI_10004094; scaffold1558 WUBlastX DNA_Crypton 74025 74471 110 + . . scaffold1558 TRF Tandem_Repeat 81517 81543 54 + . . scaffold1558 GLEAN mRNA 84449 86754 0.642884 - . ID=CGI_10004095; scaffold1558 GLEAN promoter 86755 87754 0.642884 - . ID=CGI_10004095; scaffold1559 GLEAN mRNA 1457 6307 1 - . ID=CGI_10004058; scaffold1559 GLEAN promoter 6308 7307 1 - . ID=CGI_10004058; scaffold1559 TRF Tandem_Repeat 11289 11318 51 + . . scaffold1559 GLEAN mRNA 16724 24090 1 - . ID=CGI_10004059; scaffold1559 TRF Tandem_Repeat 18197 18939 1037 + . . scaffold1559 GLEAN promoter 24091 25090 1 - . ID=CGI_10004059; scaffold1559 GLEAN promoter 27881 28880 0.65484 + . ID=CGI_10004060; scaffold1559 GLEAN mRNA 28881 53702 0.65484 + . ID=CGI_10004060; scaffold1559 TRF Tandem_Repeat 38772 39241 841 + . . scaffold1559 TRF Tandem_Repeat 42747 42780 68 + . . scaffold1559 GLEAN mRNA 48387 48792 1 - . ID=CGI_10004061; scaffold1559 GLEAN promoter 48793 49792 1 - . ID=CGI_10004061; scaffold1559 WUBlastX LINE_CR1 55301 56410 312 + . . scaffold1559 WUBlastX LINE_CR1-L2 55535 56425 550 + . . scaffold1559 WUBlastX LINE_CR1-L2 56418 56984 349 + . . scaffold1559 WUBlastX LINE_L2 56986 57504 113 + . . scaffold1559 TRF Tandem_Repeat 62494 62589 129 + . . scaffold1559 TRF Tandem_Repeat 62494 62585 132 + . . scaffold1559 GLEAN promoter 62666 63665 0.648579 + . ID=CGI_10004062; scaffold1559 GLEAN mRNA 63666 64196 0.648579 + . ID=CGI_10004062; scaffold1559 WUBlastX LINE_L1-Tx1 89438 89995 171 + . . scaffold156 GLEAN promoter 1 911 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 424 725 206 + . . scaffold156 TRF Tandem_Repeat 430 683 127 + . . scaffold156 TRF Tandem_Repeat 447 723 176 + . . scaffold156 TRF Tandem_Repeat 501 727 157 + . . scaffold156 GLEAN mRNA 912 8440 0.999676 + . ID=CGI_10026468; scaffold156 TRF Tandem_Repeat 3959 4301 217 + . . scaffold156 TRF Tandem_Repeat 4055 4592 365 + . . scaffold156 TRF Tandem_Repeat 4055 4242 127 + . . scaffold156 TRF Tandem_Repeat 4162 4263 50 + . . scaffold156 TRF Tandem_Repeat 4244 4592 440 + . . scaffold156 TRF Tandem_Repeat 4365 4458 50 + . . scaffold156 TRF Tandem_Repeat 5732 6190 427 + . . scaffold156 TRF Tandem_Repeat 5791 6190 431 + . . scaffold156 TRF Tandem_Repeat 5791 6181 435 + . . scaffold156 TRF Tandem_Repeat 7497 7652 163 + . . scaffold156 TRF Tandem_Repeat 11101 11527 755 + . . scaffold156 GLEAN mRNA 12242 14609 1 - . ID=CGI_10026470; scaffold156 GLEAN promoter 13763 14762 0.782343 + . ID=CGI_10026471; scaffold156 GLEAN promoter 14610 15609 1 - . ID=CGI_10026470; scaffold156 GLEAN mRNA 14763 25823 0.782343 + . ID=CGI_10026471; scaffold156 TRF Tandem_Repeat 16359 16387 58 + . . scaffold156 TRF Tandem_Repeat 21737 21781 72 + . . scaffold156 WUBlastX LTR_Gypsy 25322 25495 44 + . . scaffold156 WUBlastX LTR_Gypsy 25513 25593 21 + . . scaffold156 WUBlastX LTR_Gypsy 25552 25638 20 + . . scaffold156 WUBlastX LTR_Gypsy 25965 26348 40 + . . scaffold156 WUBlastX LTR_Gypsy 26184 26369 76 + . . scaffold156 WUBlastX LTR_Gypsy-Cigr 26220 26534 77 + . . scaffold156 WUBlastX LTR_Gypsy 26561 26725 95 + . . scaffold156 WUBlastX LTR_Gypsy 26731 27150 116 + . . scaffold156 WUBlastX LTR_Gypsy-Cigr 26896 27225 167 + . . scaffold156 WUBlastX LTR_Gypsy 26899 27153 177 + . . scaffold156 WUBlastX LTR_Gypsy 27156 27608 102 + . . scaffold156 WUBlastX LTR_Gypsy 27168 27803 33 + . . scaffold156 WUBlastX LTR_Gypsy 27586 27705 36 + . . scaffold156 TRF Tandem_Repeat 32852 32883 57 + . . scaffold156 GLEAN promoter 41913 42912 0.928559 + . ID=CGI_10026473; scaffold156 GLEAN mRNA 42913 43612 0.928559 + . ID=CGI_10026473; scaffold156 GLEAN promoter 45102 46101 0.998499 + . ID=CGI_10026474; scaffold156 GLEAN mRNA 46102 47367 0.998499 + . ID=CGI_10026474; scaffold156 GLEAN promoter 46452 47451 0.511907 + . ID=CGI_10026475; scaffold156 GLEAN mRNA 47452 61764 0.511907 + . ID=CGI_10026475; scaffold156 TRF Tandem_Repeat 52775 53590 1310 + . . scaffold156 WUBlastX LTR_Pao 56116 56754 595 - . . scaffold156 WUBlastX LTR_Pao 56763 57113 367 - . . scaffold156 WUBlastX LTR_Pao 57119 57946 495 - . . scaffold156 WUBlastX LTR_Pao 57913 58596 516 - . . scaffold156 TRF Tandem_Repeat 58597 58854 358 + . . scaffold156 WUBlastX LTR_Pao 58985 59308 257 - . . scaffold156 WUBlastX LTR_Pao 59293 59682 299 - . . scaffold156 WUBlastX LTR_Pao 59305 59772 285 - . . scaffold156 WUBlastX LTR_Pao 59675 59803 57 - . . scaffold156 WUBlastX LTR_Pao 59810 60643 511 - . . scaffold156 WUBlastX LTR_Pao 60579 61241 303 - . . scaffold156 WUBlastX LTR_Pao 61229 61339 20 - . . scaffold156 TRF Tandem_Repeat 61771 61808 58 + . . scaffold156 WUBlastX LTR_Pao 61881 62093 69 - . . scaffold156 WUBlastX LTR_Pao 62288 62683 21 - . . scaffold156 WUBlastX DNA_Harbinger 71716 71976 66 - . . scaffold156 WUBlastX LTR_Ngaro 99775 99993 72 + . . scaffold156 TRF Tandem_Repeat 100749 100811 126 + . . scaffold156 WUBlastX LTR_Gypsy 108323 108931 150 - . . scaffold156 WUBlastX LTR_Gypsy 108344 109162 85 - . . scaffold156 WUBlastX LTR_Gypsy-Cigr 109061 109186 29 - . . scaffold156 GLEAN mRNA 110560 111498 0.677735 - . ID=CGI_10026476; scaffold156 GLEAN promoter 111499 112498 0.677735 - . ID=CGI_10026476; scaffold156 WUBlastX RC_Helitron 112621 112812 61 - . . scaffold156 TRF Tandem_Repeat 115307 116600 1903 + . . scaffold156 TRF Tandem_Repeat 116624 116677 54 + . . scaffold156 TRF Tandem_Repeat 116627 116685 63 + . . scaffold156 TRF Tandem_Repeat 124331 124381 59 + . . scaffold156 TRF Tandem_Repeat 124752 124797 92 + . . scaffold156 TRF Tandem_Repeat 125620 125667 51 + . . scaffold156 GLEAN promoter 127111 128110 0.505818 + . ID=CGI_10026477; scaffold156 GLEAN mRNA 128111 128845 0.505818 + . ID=CGI_10026477; scaffold156 TRF Tandem_Repeat 135058 135083 52 + . . scaffold156 TRF Tandem_Repeat 142170 142195 52 + . . scaffold156 TRF Tandem_Repeat 144314 144375 124 + . . scaffold156 GLEAN promoter 144568 145567 0.543558 + . ID=CGI_10026478; scaffold156 GLEAN mRNA 145568 146763 0.543558 + . ID=CGI_10026478; scaffold156 GLEAN mRNA 147036 162064 0.997813 - . ID=CGI_10026479; scaffold156 GLEAN promoter 162065 163064 0.997813 - . ID=CGI_10026479; scaffold156 GLEAN promoter 162185 163184 0.306979 + . ID=CGI_10026480; scaffold156 GLEAN mRNA 163185 176544 0.306979 + . ID=CGI_10026480; scaffold156 GLEAN mRNA 180483 209202 0.999 - . ID=CGI_10026481; scaffold156 TRF Tandem_Repeat 199576 199645 131 + . . scaffold156 TRF Tandem_Repeat 200623 200651 58 + . . scaffold156 GLEAN promoter 207337 208336 0.712691 + . ID=CGI_10026482; scaffold156 GLEAN mRNA 208337 214490 0.712691 + . ID=CGI_10026482; scaffold156 GLEAN promoter 209203 210202 0.999 - . ID=CGI_10026481; scaffold156 GLEAN promoter 213787 214786 0.796737 + . ID=CGI_10026483; scaffold156 GLEAN mRNA 214787 226624 0.796737 + . ID=CGI_10026483; scaffold156 TRF Tandem_Repeat 222952 223231 305 + . . scaffold156 GLEAN promoter 232811 233810 0.990897 + . ID=CGI_10026484; scaffold156 GLEAN mRNA 233811 241733 0.990897 + . ID=CGI_10026484; scaffold156 WUBlastX DNA_hAT-Tip100 238845 239093 77 - . . scaffold156 WUBlastX DNA_hAT-Tip100 238869 239075 94 - . . scaffold156 WUBlastX DNA_hAT-Tip100 238881 239132 67 - . . scaffold156 WUBlastX LINE_R2-Hero 240837 241619 313 + . . scaffold156 GLEAN mRNA 241119 253785 0.986993 - . ID=CGI_10026485; scaffold156 GLEAN promoter 242141 243140 0.999351 + . ID=CGI_10026486; scaffold156 GLEAN mRNA 243141 251328 0.999351 + . ID=CGI_10026486; scaffold156 TRF Tandem_Repeat 245627 247233 2586 + . . scaffold156 GLEAN promoter 253786 254785 0.986993 - . ID=CGI_10026485; scaffold156 GLEAN promoter 255572 256571 0.560737 + . ID=CGI_10026487; scaffold156 GLEAN mRNA 256572 260082 0.560737 + . ID=CGI_10026487; scaffold156 GLEAN promoter 259186 260185 0.542247 + . ID=CGI_10026488; scaffold156 GLEAN mRNA 260186 271571 0.542247 + . ID=CGI_10026488; scaffold156 TRF Tandem_Repeat 264617 264667 102 + . . scaffold156 TRF Tandem_Repeat 265518 265558 52 + . . scaffold156 TRF Tandem_Repeat 269300 269513 329 + . . scaffold156 GLEAN mRNA 272710 277708 0.558302 - . ID=CGI_10026489; scaffold156 WUBlastX LINE_L2 274507 274830 68 + . . scaffold156 WUBlastX LINE_CR1-L2 274820 275104 50 + . . scaffold156 WUBlastX LINE_L2 274820 275056 64 + . . scaffold156 WUBlastX LINE_L2 275181 275453 37 + . . scaffold156 GLEAN promoter 277709 278708 0.558302 - . ID=CGI_10026489; scaffold156 GLEAN mRNA 281921 285748 0.969494 - . ID=CGI_10026490; scaffold156 GLEAN promoter 285749 286748 0.969494 - . ID=CGI_10026490; scaffold156 WUBlastX LINE_RTE-X 287235 287444 58 + . . scaffold156 WUBlastX LINE_RTE-X 287390 287746 64 + . . scaffold156 WUBlastX LINE_RTE-X 287471 287890 55 + . . scaffold156 WUBlastX LINE_RTE-X 287471 287743 90 + . . scaffold156 GLEAN mRNA 293639 301921 0.999747 - . ID=CGI_10026491; scaffold156 TRF Tandem_Repeat 295089 296171 1384 + . . scaffold156 TRF Tandem_Repeat 298115 298148 52 + . . scaffold156 GLEAN promoter 301922 302921 0.999747 - . ID=CGI_10026491; scaffold156 GLEAN mRNA 302829 305068 0.999798 - . ID=CGI_10026492; scaffold156 WUBlastX DNA_IS4EU 303352 303654 77 - . . scaffold156 GLEAN promoter 305069 306068 0.999798 - . ID=CGI_10026492; scaffold156 GLEAN promoter 306826 307825 0.999922 + . ID=CGI_10026493; scaffold156 GLEAN mRNA 307826 309985 0.999922 + . ID=CGI_10026493; scaffold156 GLEAN mRNA 312153 320929 0.992253 - . ID=CGI_10026494; scaffold156 GLEAN promoter 320930 321929 0.992253 - . ID=CGI_10026494; scaffold156 GLEAN mRNA 321239 327726 0.993116 - . ID=CGI_10026495; scaffold156 GLEAN promoter 325940 326939 0.63561 + . ID=CGI_10026496; scaffold156 GLEAN mRNA 326940 337481 0.63561 + . ID=CGI_10026496; scaffold156 GLEAN promoter 327727 328726 0.993116 - . ID=CGI_10026495; scaffold156 WUBlastX LINE_RTE-X 327888 328073 56 - . . scaffold156 WUBlastX LINE_RTE-X 328012 328179 51 - . . scaffold156 WUBlastX LINE_RTE-X 328012 328224 33 - . . scaffold156 TRF Tandem_Repeat 331580 331609 51 + . . scaffold156 WUBlastX LINE_R2-Hero 333086 333499 350 - . . scaffold156 GLEAN mRNA 344252 347529 0.999673 - . ID=CGI_10026497; scaffold156 GLEAN promoter 347530 348529 0.999673 - . ID=CGI_10026497; scaffold156 WUBlastX LTR_ERV1 357480 357821 56 - . . scaffold156 GLEAN mRNA 361801 363140 0.887041 - . ID=CGI_10026498; scaffold156 GLEAN promoter 363141 364140 0.887041 - . ID=CGI_10026498; scaffold156 WUBlastX LINE_Penelope 363461 363967 42 + . . scaffold156 GLEAN mRNA 377742 428749 0.652335 - . ID=CGI_10026499; scaffold156 TRF Tandem_Repeat 408882 408966 152 + . . scaffold156 TRF Tandem_Repeat 409055 409113 118 + . . scaffold156 TRF Tandem_Repeat 409338 410315 1442 + . . scaffold156 TRF Tandem_Repeat 424755 424966 352 + . . scaffold156 TRF Tandem_Repeat 425567 425736 184 + . . scaffold156 GLEAN promoter 428750 429749 0.652335 - . ID=CGI_10026499; scaffold156 TRF Tandem_Repeat 431480 431537 107 + . . scaffold156 TRF Tandem_Repeat 434983 435053 142 + . . scaffold156 TRF Tandem_Repeat 437813 437843 62 + . . scaffold156 TRF Tandem_Repeat 440744 440785 84 + . . scaffold156 GLEAN promoter 444550 445549 0.998504 + . ID=CGI_10026500; scaffold156 GLEAN mRNA 445550 446368 0.998504 + . ID=CGI_10026500; scaffold156 GLEAN mRNA 449389 461164 0.999927 - . ID=CGI_10026501; scaffold156 TRF Tandem_Repeat 450400 450452 106 + . . scaffold156 GLEAN promoter 461165 462164 0.999927 - . ID=CGI_10026501; scaffold156 GLEAN mRNA 462310 466038 0.999248 - . ID=CGI_10026502; scaffold156 GLEAN promoter 466039 467038 0.999248 - . ID=CGI_10026502; scaffold156 TRF Tandem_Repeat 467081 467152 123 + . . scaffold156 TRF Tandem_Repeat 468092 468116 50 + . . scaffold156 WUBlastX LINE_RTE-X 468466 469089 162 - . . scaffold156 GLEAN promoter 468758 469757 0.896096 + . ID=CGI_10026503; scaffold156 GLEAN mRNA 469758 473961 0.896096 + . ID=CGI_10026503; scaffold156 TRF Tandem_Repeat 469871 470023 126 + . . scaffold156 TRF Tandem_Repeat 470317 470455 150 + . . scaffold156 TRF Tandem_Repeat 471907 471941 52 + . . scaffold156 GLEAN mRNA 476681 495575 0.990447 - . ID=CGI_10026504; scaffold156 TRF Tandem_Repeat 485916 485967 104 + . . scaffold156 TRF Tandem_Repeat 493656 493695 80 + . . scaffold156 GLEAN promoter 495576 496575 0.990447 - . ID=CGI_10026504; scaffold156 GLEAN mRNA 498409 502168 0.614183 - . ID=CGI_10026505; scaffold156 GLEAN promoter 502169 503168 0.614183 - . ID=CGI_10026505; scaffold156 TRF Tandem_Repeat 508210 508270 104 + . . scaffold156 GLEAN mRNA 509383 524946 0.75449 - . ID=CGI_10026506; scaffold156 TRF Tandem_Repeat 514210 514895 1232 + . . scaffold156 TRF Tandem_Repeat 514906 514940 52 + . . scaffold156 GLEAN promoter 524947 525946 0.75449 - . ID=CGI_10026506; scaffold156 WUBlastX LTR_Pao 525979 527508 1301 - . . scaffold156 WUBlastX LINE_RTE-X 529286 531274 897 - . . scaffold156 WUBlastX LINE_CR1 530090 531628 45 - . . scaffold156 GLEAN promoter 530789 531788 0.797603 + . ID=CGI_10026507; scaffold156 GLEAN mRNA 531789 545215 0.797603 + . ID=CGI_10026507; scaffold156 TRF Tandem_Repeat 534159 534189 62 + . . scaffold156 TRF Tandem_Repeat 539123 539212 71 + . . scaffold156 TRF Tandem_Repeat 539436 539531 81 + . . scaffold156 GLEAN mRNA 546685 577646 0.516159 - . ID=CGI_10026508; scaffold156 TRF Tandem_Repeat 551518 551914 322 + . . scaffold156 TRF Tandem_Repeat 551520 551912 264 + . . scaffold156 TRF Tandem_Repeat 551570 551912 315 + . . scaffold156 GLEAN promoter 577647 578646 0.516159 - . ID=CGI_10026508; scaffold156 GLEAN promoter 584704 585703 1 + . ID=CGI_10026509; scaffold156 GLEAN mRNA 585704 600197 1 + . ID=CGI_10026509; scaffold156 GLEAN mRNA 607998 608565 1 - . ID=CGI_10026510; scaffold156 GLEAN promoter 608566 609565 1 - . ID=CGI_10026510; scaffold156 TRF Tandem_Repeat 612044 612119 134 + . . scaffold156 TRF Tandem_Repeat 613624 613665 84 + . . scaffold156 TRF Tandem_Repeat 617093 617125 66 + . . scaffold156 GLEAN mRNA 622521 622886 0.999372 - . ID=CGI_10026512; scaffold156 GLEAN promoter 622887 623886 0.999372 - . ID=CGI_10026512; scaffold156 GLEAN promoter 628804 629803 0.777482 + . ID=CGI_10026513; scaffold156 GLEAN mRNA 629804 631162 0.777482 + . ID=CGI_10026513; scaffold156 TRF Tandem_Repeat 633233 633299 62 + . . scaffold156 TRF Tandem_Repeat 633256 633304 98 + . . scaffold156 TRF Tandem_Repeat 634006 634059 108 + . . scaffold156 TRF Tandem_Repeat 634171 634219 62 + . . scaffold156 TRF Tandem_Repeat 639668 639722 101 + . . scaffold156 TRF Tandem_Repeat 649445 649490 92 + . . scaffold156 GLEAN promoter 651931 652930 0.999025 + . ID=CGI_10026514; scaffold156 GLEAN mRNA 652931 669843 0.999025 + . ID=CGI_10026514; scaffold156 GLEAN mRNA 652973 662246 1 - . ID=CGI_10026515; scaffold156 TRF Tandem_Repeat 655802 655840 78 + . . scaffold156 TRF Tandem_Repeat 659234 659266 66 + . . scaffold156 GLEAN promoter 662247 663246 1 - . ID=CGI_10026515; scaffold156 GLEAN mRNA 669682 693584 0.721042 - . ID=CGI_10026516; scaffold156 TRF Tandem_Repeat 680176 680594 608 + . . scaffold156 WUBlastX DNA_Kolobok-Hyd 687921 688256 51 - . . scaffold156 WUBlastX DNA_Kolobok-Hyd 688119 688724 52 - . . scaffold156 WUBlastX DNA_Kolobok-Hyd 688254 688721 76 - . . scaffold156 WUBlastX DNA_Kolobok-Hyd 688368 688724 79 - . . scaffold156 WUBlastX DNA_Kolobok-Hyd 689443 689514 22 - . . scaffold156 GLEAN promoter 693585 694584 0.721042 - . ID=CGI_10026516; scaffold156 TRF Tandem_Repeat 706210 706254 90 + . . scaffold156 WUBlastX LINE_L1-Tx1 707398 707523 26 + . . scaffold156 WUBlastX LINE_L1 707631 708377 285 + . . scaffold156 WUBlastX LINE_L1-Tx1 708406 709890 534 + . . scaffold156 WUBlastX LINE_L1-Tx1 709883 710653 507 + . . scaffold156 WUBlastX LINE_L1-Tx1 710593 711582 331 + . . scaffold156 WUBlastX LINE_L1-Tx1 711611 711898 34 + . . scaffold156 WUBlastX LINE_L1-Tx1 711819 711917 22 + . . scaffold156 GLEAN promoter 716569 717568 0.999371 + . ID=CGI_10026518; scaffold156 GLEAN mRNA 716803 736043 0.463925 - . ID=CGI_10026517; scaffold156 GLEAN mRNA 717569 717895 0.999371 + . ID=CGI_10026518; scaffold156 GLEAN promoter 718008 719007 0.999989 + . ID=CGI_10026519; scaffold156 GLEAN mRNA 719008 721600 0.999989 + . ID=CGI_10026519; scaffold156 WUBlastX LINE_L2 721739 721972 49 + . . scaffold156 WUBlastX LINE_L2 721787 722146 96 + . . scaffold156 WUBlastX LINE_CR1-L2 723395 723448 33 + . . scaffold156 WUBlastX LINE_L2 723560 723727 52 + . . scaffold156 WUBlastX LINE_L2 723726 725780 1152 + . . scaffold156 WUBlastX LINE_L2 725782 726705 535 + . . scaffold156 TRF Tandem_Repeat 730434 730500 50 + . . scaffold156 TRF Tandem_Repeat 735764 735799 54 + . . scaffold156 GLEAN promoter 736044 737043 0.463925 - . ID=CGI_10026517; scaffold156 GLEAN mRNA 741739 742299 0.836238 - . ID=CGI_10026520; scaffold156 GLEAN promoter 742300 743299 0.836238 - . ID=CGI_10026520; scaffold156 TRF Tandem_Repeat 769277 769374 55 + . . scaffold156 WUBlastX DNA_TcMar-Tc1 775110 775289 20 + . . scaffold156 WUBlastX DNA_TcMar-Tc1 775526 776344 315 + . . scaffold156 GLEAN mRNA 782773 786345 0.96041 - . ID=CGI_10026521; scaffold156 GLEAN promoter 786346 787345 0.96041 - . ID=CGI_10026521; scaffold156 GLEAN mRNA 788178 789839 0.997955 - . ID=CGI_10026522; scaffold156 GLEAN promoter 789840 790839 0.997955 - . ID=CGI_10026522; scaffold156 GLEAN mRNA 792280 797200 0.999997 - . ID=CGI_10026523; scaffold156 GLEAN promoter 797201 798200 0.999997 - . ID=CGI_10026523; scaffold156 GLEAN mRNA 797534 807394 0.962 - . ID=CGI_10026524; scaffold156 GLEAN promoter 807395 808394 0.962 - . ID=CGI_10026524; scaffold156 GLEAN mRNA 807399 821046 0.99874 - . ID=CGI_10026525; scaffold156 TRF Tandem_Repeat 815016 816153 2168 + . . scaffold156 GLEAN promoter 821047 822046 0.99874 - . ID=CGI_10026525; scaffold156 TRF Tandem_Repeat 823527 823619 62 + . . scaffold156 TRF Tandem_Repeat 827647 827682 72 + . . scaffold156 TRF Tandem_Repeat 831224 831265 66 + . . scaffold156 GLEAN promoter 848662 849661 0.999371 + . ID=CGI_10026526; scaffold156 GLEAN mRNA 849662 849901 0.999371 + . ID=CGI_10026526; scaffold156 GLEAN promoter 854433 855432 0.979156 + . ID=CGI_10026527; scaffold156 GLEAN mRNA 855433 866423 0.979156 + . ID=CGI_10026527; scaffold156 TRF Tandem_Repeat 860452 860507 112 + . . scaffold156 TRF Tandem_Repeat 862350 862387 67 + . . scaffold156 GLEAN mRNA 872188 884800 0.422519 - . ID=CGI_10026528; scaffold156 TRF Tandem_Repeat 880787 880837 84 + . . scaffold156 TRF Tandem_Repeat 880787 880837 75 + . . scaffold156 TRF Tandem_Repeat 881519 881580 124 + . . scaffold156 GLEAN promoter 884801 885800 0.422519 - . ID=CGI_10026528; scaffold156 GLEAN mRNA 885273 894645 0.993928 - . ID=CGI_10026529; scaffold156 TRF Tandem_Repeat 888427 888479 106 + . . scaffold156 GLEAN promoter 893703 894702 0.999129 + . ID=CGI_10026530; scaffold156 GLEAN promoter 894646 895645 0.993928 - . ID=CGI_10026529; scaffold156 GLEAN mRNA 894703 897257 0.999129 + . ID=CGI_10026530; scaffold156 TRF Tandem_Repeat 896019 896063 72 + . . scaffold156 GLEAN promoter 899795 900794 1 + . ID=CGI_10026531; scaffold156 GLEAN mRNA 900795 901316 1 + . ID=CGI_10026531; scaffold156 WUBlastX LINE_CR1 901733 902407 27 + . . scaffold156 GLEAN promoter 901876 902875 0.99967 + . ID=CGI_10026532; scaffold156 WUBlastX LINE_CR1 901907 902527 218 + . . scaffold156 WUBlastX LINE_CR1 902003 902527 343 + . . scaffold156 GLEAN mRNA 902876 906343 0.99967 + . ID=CGI_10026532; scaffold156 GLEAN mRNA 910623 912946 0.836196 - . ID=CGI_10026533; scaffold156 GLEAN promoter 912947 913946 0.836196 - . ID=CGI_10026533; scaffold156 WUBlastX LINE_RTE-X 918628 919074 72 - . . scaffold156 WUBlastX LINE_RTE-X 918712 919074 100 - . . scaffold156 WUBlastX LINE_RTE-X 918712 918966 120 - . . scaffold156 TRF Tandem_Repeat 919925 919966 84 + . . scaffold156 GLEAN mRNA 920443 923257 0.999676 - . ID=CGI_10026534; scaffold156 TRF Tandem_Repeat 920956 921003 96 + . . scaffold156 GLEAN promoter 923258 924257 0.999676 - . ID=CGI_10026534; scaffold156 TRF Tandem_Repeat 925486 925724 203 + . . scaffold156 TRF Tandem_Repeat 928229 928406 311 + . . scaffold156 GLEAN promoter 932214 933213 0.61099 + . ID=CGI_10026535; scaffold156 GLEAN mRNA 933214 963088 0.61099 + . ID=CGI_10026535; scaffold156 TRF Tandem_Repeat 937706 937741 54 + . . scaffold156 TRF Tandem_Repeat 941652 941686 70 + . . scaffold156 TRF Tandem_Repeat 949649 949690 66 + . . scaffold156 TRF Tandem_Repeat 957402 957544 83 + . . scaffold156 TRF Tandem_Repeat 979879 979926 78 + . . scaffold156 GLEAN mRNA 981628 994324 0.538231 - . ID=CGI_10026536; scaffold156 TRF Tandem_Repeat 984011 984038 56 + . . scaffold156 GLEAN promoter 994325 995324 0.538231 - . ID=CGI_10026536; scaffold156 WUBlastX LTR_DIRS 1006641 1006916 66 + . . scaffold156 WUBlastX LTR_DIRS? 1006907 1007029 47 + . . scaffold156 WUBlastX LTR_DIRS 1007055 1007150 43 + . . scaffold156 TRF Tandem_Repeat 1015793 1015856 128 + . . scaffold156 WUBlastX RC_Helitron 1023564 1024007 21 + . . scaffold156 WUBlastX DNA_Helitron 1023982 1024839 91 + . . scaffold156 WUBlastX RC_Helitron 1024015 1024554 233 + . . scaffold156 WUBlastX RC_Helitron 1024835 1027405 696 + . . scaffold156 WUBlastX RC_Helitron 1025339 1027396 781 + . . scaffold156 WUBlastX RC_Helitron 1027401 1028867 1212 + . . scaffold156 WUBlastX RC_Helitron 1028803 1029000 99 + . . scaffold156 WUBlastX RC_Helitron 1028803 1029141 84 + . . scaffold156 GLEAN promoter 1033084 1034083 0.999991 + . ID=CGI_10026537; scaffold156 GLEAN mRNA 1034084 1034971 0.999991 + . ID=CGI_10026537; scaffold156 GLEAN mRNA 1036537 1046551 0.601744 - . ID=CGI_10026538; scaffold156 TRF Tandem_Repeat 1039600 1039666 134 + . . scaffold156 TRF Tandem_Repeat 1042559 1042600 84 + . . scaffold156 GLEAN promoter 1045767 1046766 0.999981 + . ID=CGI_10026539; scaffold156 GLEAN promoter 1046552 1047551 0.601744 - . ID=CGI_10026538; scaffold156 GLEAN mRNA 1046767 1048419 0.999981 + . ID=CGI_10026539; scaffold156 TRF Tandem_Repeat 1050739 1050995 230 + . . scaffold156 TRF Tandem_Repeat 1050741 1051003 148 + . . scaffold156 TRF Tandem_Repeat 1050766 1050994 284 + . . scaffold156 TRF Tandem_Repeat 1062180 1062219 55 + . . scaffold156 TRF Tandem_Repeat 1062181 1062294 71 + . . scaffold156 TRF Tandem_Repeat 1062189 1062291 59 + . . scaffold156 TRF Tandem_Repeat 1067519 1067577 118 + . . scaffold156 GLEAN mRNA 1070591 1071675 1 - . ID=CGI_10026541; scaffold156 GLEAN promoter 1071676 1072675 1 - . ID=CGI_10026541; scaffold156 TRF Tandem_Repeat 1073292 1073333 66 + . . scaffold156 TRF Tandem_Repeat 1080556 1080635 65 + . . scaffold156 TRF Tandem_Repeat 1080557 1080634 68 + . . scaffold156 TRF Tandem_Repeat 1080557 1080634 59 + . . scaffold156 TRF Tandem_Repeat 1080583 1080635 58 + . . scaffold156 GLEAN promoter 1086589 1087588 1 + . ID=CGI_10026542; scaffold156 GLEAN mRNA 1087589 1090026 1 + . ID=CGI_10026542; scaffold156 GLEAN mRNA 1094153 1105194 0.982183 - . ID=CGI_10026543; scaffold156 WUBlastX LTR_Gypsy 1100449 1101780 536 - . . scaffold156 WUBlastX LTR_Gypsy-Cigr 1100653 1103382 1878 - . . scaffold156 WUBlastX LTR_Gypsy 1103361 1103792 69 - . . scaffold156 WUBlastX LTR_Gypsy 1103526 1103792 80 - . . scaffold156 GLEAN promoter 1105195 1106194 0.982183 - . ID=CGI_10026543; scaffold156 GLEAN promoter 1106511 1107510 0.852291 + . ID=CGI_10026544; scaffold156 GLEAN mRNA 1107511 1114101 0.852291 + . ID=CGI_10026544; scaffold156 TRF Tandem_Repeat 1112150 1112193 88 + . . scaffold156 TRF Tandem_Repeat 1115614 1115661 68 + . . scaffold156 TRF Tandem_Repeat 1115997 1116037 82 + . . scaffold156 TRF Tandem_Repeat 1116644 1116706 117 + . . scaffold156 TRF Tandem_Repeat 1161911 1162003 100 + . . scaffold156 TRF Tandem_Repeat 1161915 1162003 67 + . . scaffold1560 GLEAN promoter 1438 2437 0.937847 + . ID=CGI_10009791; scaffold1560 GLEAN mRNA 2438 7237 0.937847 + . ID=CGI_10009791; scaffold1560 TRF Tandem_Repeat 5762 5984 164 + . . scaffold1560 TRF Tandem_Repeat 5793 5980 184 + . . scaffold1560 GLEAN mRNA 10590 17123 0.580729 - . ID=CGI_10009792; scaffold1560 GLEAN promoter 17124 18123 0.580729 - . ID=CGI_10009792; scaffold1560 TRF Tandem_Repeat 21844 21882 78 + . . scaffold1560 TRF Tandem_Repeat 24912 24965 101 + . . scaffold1560 GLEAN promoter 28213 29212 0.998701 + . ID=CGI_10009793; scaffold1560 GLEAN mRNA 29213 72051 0.998701 + . ID=CGI_10009793; scaffold1560 TRF Tandem_Repeat 36088 36128 82 + . . scaffold1560 TRF Tandem_Repeat 39556 39596 64 + . . scaffold1560 TRF Tandem_Repeat 46798 46849 77 + . . scaffold1560 TRF Tandem_Repeat 61838 61922 88 + . . scaffold1560 TRF Tandem_Repeat 65563 65737 251 + . . scaffold1560 TRF Tandem_Repeat 66016 66065 100 + . . scaffold1560 TRF Tandem_Repeat 68460 68633 156 + . . scaffold1560 TRF Tandem_Repeat 73805 73846 66 + . . scaffold1560 GLEAN mRNA 77049 79667 0.999045 - . ID=CGI_10009794; scaffold1560 GLEAN promoter 79668 80667 0.999045 - . ID=CGI_10009794; scaffold1560 WUBlastX LINE_CR1-L2 82961 83035 50 - . . scaffold1560 TRF Tandem_Repeat 101168 101251 64 + . . scaffold1560 TRF Tandem_Repeat 101169 101249 63 + . . scaffold1560 TRF Tandem_Repeat 111978 112026 98 + . . scaffold1560 TRF Tandem_Repeat 127985 128025 82 + . . scaffold1560 WUBlastX LTR_Gypsy 137086 137481 273 + . . scaffold1560 WUBlastX LTR_Gypsy 137481 139973 1588 + . . scaffold1560 WUBlastX LTR_Gypsy 138090 139973 1635 + . . scaffold1560 WUBlastX LTR_Gypsy 139976 140572 241 + . . scaffold1560 WUBlastX LTR_Gypsy 139976 140464 429 + . . scaffold1560 WUBlastX LTR_Gypsy 140479 140946 223 + . . scaffold1560 WUBlastX LTR_Gypsy 140932 140991 20 + . . scaffold1560 WUBlastX DNA_MuDR 143376 143660 30 - . . scaffold1560 TRF Tandem_Repeat 149908 149981 148 + . . scaffold1560 WUBlastX LINE_RTE-X 153223 155268 1435 + . . scaffold1560 WUBlastX LINE_RTE-X 154648 155382 125 + . . scaffold1560 GLEAN mRNA 158184 159530 0.999538 - . ID=CGI_10009795; scaffold1560 GLEAN promoter 159531 160530 0.999538 - . ID=CGI_10009795; scaffold1560 TRF Tandem_Repeat 160487 160551 130 + . . scaffold1560 GLEAN mRNA 163984 169162 1 - . ID=CGI_10009796; scaffold1560 GLEAN promoter 169163 170162 1 - . ID=CGI_10009796; scaffold1560 GLEAN promoter 170199 171198 0.498517 + . ID=CGI_10009797; scaffold1560 GLEAN mRNA 171199 202711 0.498517 + . ID=CGI_10009797; scaffold1560 TRF Tandem_Repeat 171930 171972 86 + . . scaffold1560 TRF Tandem_Repeat 176033 176109 138 + . . scaffold1560 GLEAN mRNA 182504 192864 1 - . ID=CGI_10009798; scaffold1560 GLEAN promoter 192865 193864 1 - . ID=CGI_10009798; scaffold1560 TRF Tandem_Repeat 200736 200941 223 + . . scaffold1560 TRF Tandem_Repeat 201423 201863 484 + . . scaffold1560 TRF Tandem_Repeat 201423 201863 433 + . . scaffold1560 GLEAN mRNA 208334 210816 0.999944 - . ID=CGI_10009799; scaffold1560 GLEAN promoter 210817 211816 0.999944 - . ID=CGI_10009799; scaffold1560 GLEAN mRNA 211256 215556 0.998889 - . ID=CGI_10009800; scaffold1560 TRF Tandem_Repeat 212335 212978 832 + . . scaffold1560 TRF Tandem_Repeat 212335 212978 924 + . . scaffold1560 GLEAN promoter 215557 216556 0.998889 - . ID=CGI_10009800; scaffold1560 GLEAN mRNA 216964 231608 0.931249 - . ID=CGI_10009801; scaffold1560 GLEAN promoter 231609 232608 0.931249 - . ID=CGI_10009801; scaffold1560 WUBlastX LINE_L1 235540 235617 20 - . . scaffold1560 WUBlastX LINE_L1-Tx1 235552 237069 429 - . . scaffold1560 WUBlastX LINE_L1-Tx1 237035 237973 520 - . . scaffold1560 WUBlastX LINE_L1 237044 238585 290 - . . scaffold1560 WUBlastX LINE_L1-Tx1 238522 238917 230 - . . scaffold1560 WUBlastX LINE_L1 238561 238983 140 - . . scaffold1560 GLEAN promoter 239834 240833 0.481188 + . ID=CGI_10009802; scaffold1560 WUBlastX LINE_CR1 240406 240738 95 + . . scaffold1560 WUBlastX LINE_I 240711 241130 39 + . . scaffold1560 GLEAN mRNA 240834 241163 0.481188 + . ID=CGI_10009802; scaffold1560 WUBlastX LINE_L1-Tx1 241574 241777 79 + . . scaffold1560 WUBlastX LINE_L1 241583 241834 38 + . . scaffold1560 WUBlastX LINE_L1-Tx1 241881 242072 66 + . . scaffold1560 WUBlastX LINE_L1-Tx1 241881 242012 75 + . . scaffold1560 WUBlastX LINE_L1-Tx1 242042 242497 62 + . . scaffold1560 WUBlastX LINE_L1 242491 242940 44 + . . scaffold1560 WUBlastX LINE_L1-Tx1 242578 243588 344 + . . scaffold1561 WUBlastX LINE_RTE-X 2751 2984 46 - . . scaffold1561 WUBlastX LTR_Gypsy 3022 3282 115 - . . scaffold1561 WUBlastX LTR_Gypsy 3254 3427 105 - . . scaffold1561 WUBlastX LTR_Gypsy 3263 3538 80 - . . scaffold1561 WUBlastX LTR_Gypsy 3423 3575 57 - . . scaffold1561 WUBlastX LTR_Gypsy 3483 3593 34 - . . scaffold1561 WUBlastX LTR_Gypsy 3498 3812 29 - . . scaffold1561 GLEAN promoter 5278 6277 0.999234 + . ID=CGI_10005689; scaffold1561 GLEAN mRNA 6278 19988 0.999234 + . ID=CGI_10005689; scaffold1561 TRF Tandem_Repeat 13155 13190 54 + . . scaffold1561 WUBlastX LTR_Ngaro 14644 14919 83 + . . scaffold1561 WUBlastX LINE_RTE-X 16436 17650 490 - . . scaffold1561 WUBlastX LINE_RTE-X 17656 18228 367 - . . scaffold1561 WUBlastX LINE_L2 17689 18333 110 - . . scaffold1561 WUBlastX LINE_RTE-X 18291 19007 32 - . . scaffold1561 WUBlastX LINE_RTE-X 18471 19823 203 - . . scaffold1561 GLEAN mRNA 20753 40366 0.862328 - . ID=CGI_10005690; scaffold1561 GLEAN promoter 40367 41366 0.862328 - . ID=CGI_10005690; scaffold1561 WUBlastX LINE_CR1-L2 40904 41437 402 + . . scaffold1561 WUBlastX LINE_CR1 40973 41743 192 + . . scaffold1561 WUBlastX LINE_CR1 40973 41545 248 + . . scaffold1561 TRF Tandem_Repeat 46918 46968 102 + . . scaffold1561 WUBlastX LINE_RTE-X 50922 51146 22 + . . scaffold1561 TRF Tandem_Repeat 53314 53693 258 + . . scaffold1561 TRF Tandem_Repeat 59371 59425 110 + . . scaffold1561 TRF Tandem_Repeat 62086 62131 92 + . . scaffold1561 GLEAN promoter 65236 66235 0.425742 + . ID=CGI_10005691; scaffold1561 GLEAN mRNA 66236 69737 0.425742 + . ID=CGI_10005691; scaffold1561 TRF Tandem_Repeat 67801 67857 87 + . . scaffold1561 GLEAN mRNA 69801 78810 1 - . ID=CGI_10005692; scaffold1561 GLEAN promoter 70777 71776 0.761607 + . ID=CGI_10005693; scaffold1561 GLEAN mRNA 71777 88192 0.761607 + . ID=CGI_10005693; scaffold1561 GLEAN promoter 78811 79810 1 - . ID=CGI_10005692; scaffold1561 GLEAN mRNA 90687 107153 0.999946 - . ID=CGI_10005694; scaffold1561 TRF Tandem_Repeat 96333 96530 101 + . . scaffold1561 WUBlastX LINE_RTE-X 97671 97904 81 - . . scaffold1561 WUBlastX LINE_RTE-X 97746 97982 58 - . . scaffold1561 WUBlastX LINE_RTE-X 98806 99525 260 - . . scaffold1561 WUBlastX LINE_RTE-X 98875 99483 293 - . . scaffold1561 WUBlastX LINE_RTE-X 98881 99909 246 - . . scaffold1561 WUBlastX LINE_RTE-BovB 100353 100454 21 - . . scaffold1561 WUBlastX LINE_CR1 100500 100547 22 - . . scaffold1561 GLEAN promoter 107154 108153 0.999946 - . ID=CGI_10005694; scaffold1561 GLEAN mRNA 108100 130977 0.678864 - . ID=CGI_10005695; scaffold1561 TRF Tandem_Repeat 109275 110062 779 + . . scaffold1561 TRF Tandem_Repeat 109628 110062 550 + . . scaffold1561 TRF Tandem_Repeat 110055 110086 64 + . . scaffold1561 TRF Tandem_Repeat 110271 110385 72 + . . scaffold1561 TRF Tandem_Repeat 110850 110907 116 + . . scaffold1561 TRF Tandem_Repeat 112221 112252 64 + . . scaffold1561 TRF Tandem_Repeat 112252 112288 74 + . . scaffold1561 TRF Tandem_Repeat 125862 125889 56 + . . scaffold1561 GLEAN promoter 130978 131977 0.678864 - . ID=CGI_10005695; scaffold1562 GLEAN mRNA 3599 7155 0.557561 - . ID=CGI_10005772; scaffold1562 GLEAN promoter 7156 8155 0.557561 - . ID=CGI_10005772; scaffold1562 GLEAN mRNA 7394 8900 1 - . ID=CGI_10005773; scaffold1562 GLEAN promoter 8901 9900 1 - . ID=CGI_10005773; scaffold1562 WUBlastX LTR_Gypsy 35225 36169 495 + . . scaffold1562 WUBlastX LTR_Gypsy 35225 36559 42 + . . scaffold1562 WUBlastX LTR_Gypsy 35240 36358 62 + . . scaffold1562 WUBlastX LTR_Copia 36500 36592 29 + . . scaffold1562 WUBlastX LTR_Gypsy 36821 36976 20 + . . scaffold1562 TRF Tandem_Repeat 41476 41712 267 + . . scaffold1562 TRF Tandem_Repeat 41900 42396 339 + . . scaffold1562 TRF Tandem_Repeat 41901 42462 460 + . . scaffold1562 TRF Tandem_Repeat 41918 42396 267 + . . scaffold1562 TRF Tandem_Repeat 42090 42436 148 + . . scaffold1562 GLEAN mRNA 48535 57920 0.593353 - . ID=CGI_10005774; scaffold1562 GLEAN promoter 57921 58920 0.593353 - . ID=CGI_10005774; scaffold1562 GLEAN promoter 62829 63828 1 + . ID=CGI_10005775; scaffold1562 GLEAN mRNA 63829 67250 1 + . ID=CGI_10005775; scaffold1562 GLEAN mRNA 73157 112953 0.997511 - . ID=CGI_10005776; scaffold1562 TRF Tandem_Repeat 75039 75289 225 + . . scaffold1562 TRF Tandem_Repeat 75085 75218 67 + . . scaffold1562 TRF Tandem_Repeat 82990 83388 397 + . . scaffold1562 TRF Tandem_Repeat 88922 89580 964 + . . scaffold1562 WUBlastX DNA_TcMar-Marin 105859 105957 65 - . . scaffold1562 WUBlastX DNA_TcMar-Marin 105859 106077 48 - . . scaffold1562 GLEAN promoter 112954 113953 0.997511 - . ID=CGI_10005776; scaffold1562 WUBlastX LINE_RTE-X 114772 115950 680 - . . scaffold1562 WUBlastX LINE_L2 115162 116094 27 - . . scaffold1562 WUBlastX LINE_RTE-X 116480 116704 70 + . . scaffold1562 WUBlastX LINE_RTE-X 116513 116746 55 + . . scaffold1562 WUBlastX LINE_RTE-X 116715 116807 32 + . . scaffold1562 WUBlastX LINE_RTE-X 116776 117717 261 + . . scaffold1562 WUBlastX LINE_RTE-X 118801 119478 362 + . . scaffold1562 WUBlastX LINE_RTE-X 119472 120470 360 + . . scaffold1562 WUBlastX LINE_CR1 123042 123146 28 - . . scaffold1562 WUBlastX LINE_CR1 123060 123212 74 - . . scaffold1562 WUBlastX LINE_CR1 123139 123732 244 - . . scaffold1562 WUBlastX LINE_CR1 123253 123732 313 - . . scaffold1562 WUBlastX LINE_CR1 123605 124330 534 - . . scaffold1562 WUBlastX LINE_CR1 123725 124591 208 - . . scaffold1562 WUBlastX LINE_CR1 123728 124321 544 - . . scaffold1562 WUBlastX LINE_CR1 124666 124902 141 - . . scaffold1562 WUBlastX LINE_CR1 124922 125281 246 - . . scaffold1562 WUBlastX LINE_CR1 125328 125714 29 - . . scaffold1562 WUBlastX LINE_L2 125475 125657 30 - . . scaffold1562 WUBlastX LINE_L2 125505 125786 70 - . . scaffold1562 WUBlastX LINE_CR1 125553 125741 107 - . . scaffold1562 TRF Tandem_Repeat 126866 126908 86 + . . scaffold1562 GLEAN mRNA 129952 130794 0.999999 - . ID=CGI_10005777; scaffold1562 GLEAN promoter 130795 131794 0.999999 - . ID=CGI_10005777; scaffold1563 GLEAN promoter 11467 12466 1 + . ID=CGI_10002335; scaffold1563 GLEAN mRNA 12467 18790 1 + . ID=CGI_10002335; scaffold1563 GLEAN mRNA 41110 42718 0.999998 - . ID=CGI_10002336; scaffold1563 GLEAN promoter 42719 43116 0.999998 - . ID=CGI_10002336; scaffold1564 TRF Tandem_Repeat 1486 1556 142 + . . scaffold1564 WUBlastX LINE_CR1-L2 4296 5000 96 + . . scaffold1564 WUBlastX LINE_CR1-L2 4446 5186 103 + . . scaffold1564 WUBlastX LINE_L2 4446 4994 134 + . . scaffold1564 WUBlastX LINE_CR1-L2 4659 4997 205 + . . scaffold1564 WUBlastX LINE_L2 5017 5496 60 + . . scaffold1564 TRF Tandem_Repeat 7096 7140 90 + . . scaffold1564 TRF Tandem_Repeat 11014 11052 78 + . . scaffold1564 TRF Tandem_Repeat 12420 12485 114 + . . scaffold1564 GLEAN mRNA 15527 16159 0.994477 - . ID=CGI_10005193; scaffold1564 GLEAN promoter 16160 17159 0.994477 - . ID=CGI_10005193; scaffold1564 TRF Tandem_Repeat 22922 22972 102 + . . scaffold1564 TRF Tandem_Repeat 24045 24101 114 + . . scaffold1564 GLEAN promoter 27102 28101 0.627641 + . ID=CGI_10005194; scaffold1564 GLEAN mRNA 28102 30679 0.627641 + . ID=CGI_10005194; scaffold1564 TRF Tandem_Repeat 33560 33610 66 + . . scaffold1564 TRF Tandem_Repeat 44942 45107 183 + . . scaffold1564 GLEAN promoter 49489 50488 0.999375 + . ID=CGI_10005195; scaffold1564 GLEAN mRNA 50489 50740 0.999375 + . ID=CGI_10005195; scaffold1564 GLEAN promoter 55337 56336 0.999675 + . ID=CGI_10005196; scaffold1564 GLEAN mRNA 56337 64566 0.999675 + . ID=CGI_10005196; scaffold1564 TRF Tandem_Repeat 58661 58709 98 + . . scaffold1564 TRF Tandem_Repeat 61881 62507 649 + . . scaffold1564 TRF Tandem_Repeat 61917 62483 551 + . . scaffold1564 TRF Tandem_Repeat 61926 62483 740 + . . scaffold1564 GLEAN mRNA 66739 69111 0.5033 - . ID=CGI_10005197; scaffold1564 GLEAN promoter 69112 70111 0.5033 - . ID=CGI_10005197; scaffold1564 TRF Tandem_Repeat 69486 69551 132 + . . scaffold1564 TRF Tandem_Repeat 73497 73544 96 + . . scaffold1564 GLEAN promoter 73652 74651 0.84036 + . ID=CGI_10005198; scaffold1564 GLEAN mRNA 74652 78416 0.84036 + . ID=CGI_10005198; scaffold1564 TRF Tandem_Repeat 76148 76209 124 + . . scaffold1564 TRF Tandem_Repeat 78748 78782 70 + . . scaffold1564 TRF Tandem_Repeat 79225 79264 80 + . . scaffold1564 GLEAN mRNA 80148 112523 0.650997 - . ID=CGI_10005199; scaffold1564 TRF Tandem_Repeat 81256 81286 62 + . . scaffold1564 TRF Tandem_Repeat 81586 81893 386 + . . scaffold1564 TRF Tandem_Repeat 98950 99027 93 + . . scaffold1564 TRF Tandem_Repeat 98950 99027 93 + . . scaffold1564 TRF Tandem_Repeat 98950 99027 93 + . . scaffold1564 WUBlastX DNA_hAT-Ac 107714 107854 55 - . . scaffold1564 WUBlastX DNA_hAT-Ac 107842 107934 22 - . . scaffold1564 WUBlastX DNA_hAT-Ac 107842 108012 22 - . . scaffold1564 WUBlastX DNA_hAT-Ac 108129 108248 45 - . . scaffold1564 GLEAN promoter 112524 113523 0.650997 - . ID=CGI_10005199; scaffold1564 TRF Tandem_Repeat 115131 115164 59 + . . scaffold1564 GLEAN mRNA 115743 120901 1 - . ID=CGI_10005200; scaffold1564 GLEAN promoter 120902 121901 1 - . ID=CGI_10005200; scaffold1565 GLEAN promoter 1 459 1 + . ID=CGI_10000778; scaffold1565 GLEAN mRNA 460 9199 1 + . ID=CGI_10000778; scaffold1565 WUBlastX LINE_L1-Tx1 6825 7412 29 - . . scaffold1565 WUBlastX LINE_L1-Tx1 6999 7469 30 - . . scaffold1565 WUBlastX LINE_L1-Tx1 7429 7791 92 - . . scaffold1565 WUBlastX LINE_L1-Tx1 7522 7845 73 - . . scaffold1565 WUBlastX LINE_L1-Tx1 7817 7951 23 - . . scaffold1566 WUBlastX LTR_Pao 6462 6860 128 - . . scaffold1566 WUBlastX LTR_Pao 6480 6770 179 - . . scaffold1566 WUBlastX LTR_Pao 7543 7959 56 - . . scaffold1566 WUBlastX LTR_Pao 7615 8010 292 - . . scaffold1566 WUBlastX LTR_Pao 7744 8058 90 - . . scaffold1566 TRF Tandem_Repeat 12756 12800 76 + . . scaffold1566 WUBlastX LTR_Pao 15360 15476 26 - . . scaffold1566 WUBlastX LTR_Pao 15393 15482 69 - . . scaffold1566 WUBlastX LTR_Pao 15457 15678 114 - . . scaffold1566 WUBlastX LTR_Pao 15481 15657 130 - . . scaffold1566 WUBlastX LINE_RTE-X 17785 17976 65 + . . scaffold1567 GLEAN mRNA 291 17545 0.991842 - . ID=CGI_10005156; scaffold1567 TRF Tandem_Repeat 10344 10455 154 + . . scaffold1567 GLEAN promoter 17546 18545 0.991842 - . ID=CGI_10005156; scaffold1567 TRF Tandem_Repeat 17766 17806 82 + . . scaffold1567 TRF Tandem_Repeat 29530 29620 155 + . . scaffold1567 TRF Tandem_Repeat 29530 29620 175 + . . scaffold1567 GLEAN promoter 36552 37551 1 + . ID=CGI_10005157; scaffold1567 GLEAN mRNA 37552 40706 1 + . ID=CGI_10005157; scaffold1567 TRF Tandem_Repeat 37924 38039 67 + . . scaffold1567 TRF Tandem_Repeat 37941 38039 75 + . . scaffold1567 GLEAN promoter 48977 49976 0.92456 + . ID=CGI_10005158; scaffold1567 GLEAN mRNA 49977 54417 0.92456 + . ID=CGI_10005158; scaffold1567 TRF Tandem_Repeat 79033 79120 167 + . . scaffold1567 TRF Tandem_Repeat 91929 92012 168 + . . scaffold1567 WUBlastX DNA_TcMar-Tc1 99949 100869 252 - . . scaffold1567 TRF Tandem_Repeat 103757 103884 157 + . . scaffold1567 TRF Tandem_Repeat 116516 116569 74 + . . scaffold1569 TRF Tandem_Repeat 6317 6381 130 + . . scaffold1569 WUBlastX LINE_CR1-L2 9995 10348 72 + . . scaffold1569 WUBlastX LINE_CR1-L2 10010 10693 56 + . . scaffold1569 WUBlastX LINE_CR1-L2 10049 10348 91 + . . scaffold1569 WUBlastX LINE_Penelope 11743 12570 136 + . . scaffold1569 WUBlastX LINE_Penelope 12130 12570 175 + . . scaffold1569 WUBlastX LINE_Penelope 12555 13202 479 + . . scaffold1569 WUBlastX LINE_Penelope 13184 13636 256 + . . scaffold1569 WUBlastX LINE_Penelope 13639 14352 194 + . . scaffold1569 WUBlastX LINE_Proto2 16430 18382 258 + . . scaffold1569 WUBlastX LINE_CR1 17519 18739 106 + . . scaffold1569 WUBlastX LINE_RTE-X 17885 18472 222 + . . scaffold1569 TRF Tandem_Repeat 19164 19200 74 + . . scaffold1569 GLEAN mRNA 22663 26139 0.999235 - . ID=CGI_10010628; scaffold1569 TRF Tandem_Repeat 24499 24996 736 + . . scaffold1569 TRF Tandem_Repeat 24499 24996 690 + . . scaffold1569 TRF Tandem_Repeat 24502 24616 179 + . . scaffold1569 GLEAN promoter 26140 27139 0.999235 - . ID=CGI_10010628; scaffold1569 GLEAN mRNA 29623 33450 0.365913 - . ID=CGI_10010629; scaffold1569 TRF Tandem_Repeat 32322 32390 138 + . . scaffold1569 GLEAN promoter 33451 34450 0.365913 - . ID=CGI_10010629; scaffold1569 WUBlastX LINE_Proto2 36886 38745 170 + . . scaffold1569 WUBlastX LINE_RTE-X 38714 39601 208 + . . scaffold1569 WUBlastX LINE_L2 38837 39775 24 + . . scaffold1569 GLEAN promoter 43131 44130 0.996848 + . ID=CGI_10010630; scaffold1569 GLEAN mRNA 44131 49096 0.996848 + . ID=CGI_10010630; scaffold1569 GLEAN mRNA 52596 56532 1 - . ID=CGI_10010631; scaffold1569 TRF Tandem_Repeat 56387 56414 56 + . . scaffold1569 GLEAN promoter 56533 57532 1 - . ID=CGI_10010631; scaffold1569 GLEAN promoter 65603 66602 0.999985 + . ID=CGI_10010632; scaffold1569 GLEAN mRNA 66603 79498 0.999985 + . ID=CGI_10010632; scaffold1569 TRF Tandem_Repeat 78842 78893 68 + . . scaffold1569 GLEAN mRNA 79547 94042 0.993829 - . ID=CGI_10010633; scaffold1569 GLEAN promoter 93847 94846 0.999898 + . ID=CGI_10010634; scaffold1569 GLEAN promoter 94043 95042 0.993829 - . ID=CGI_10010633; scaffold1569 GLEAN mRNA 94847 109588 0.999898 + . ID=CGI_10010634; scaffold1569 TRF Tandem_Repeat 95924 96047 185 + . . scaffold1569 TRF Tandem_Repeat 95924 96051 127 + . . scaffold1569 TRF Tandem_Repeat 102499 102592 61 + . . scaffold1569 TRF Tandem_Repeat 104831 104857 54 + . . scaffold1569 GLEAN mRNA 114991 121558 1 - . ID=CGI_10010635; scaffold1569 TRF Tandem_Repeat 119563 119630 127 + . . scaffold1569 TRF Tandem_Repeat 120677 120790 137 + . . scaffold1569 GLEAN promoter 121559 122558 1 - . ID=CGI_10010635; scaffold1569 GLEAN mRNA 121692 127604 0.551199 - . ID=CGI_10010636; scaffold1569 TRF Tandem_Repeat 125300 125976 1052 + . . scaffold1569 GLEAN promoter 127334 128333 0.999949 + . ID=CGI_10010637; scaffold1569 GLEAN promoter 127605 128604 0.551199 - . ID=CGI_10010636; scaffold1569 GLEAN mRNA 128334 155107 0.999949 + . ID=CGI_10010637; scaffold1569 TRF Tandem_Repeat 130563 130595 57 + . . scaffold1569 GLEAN mRNA 140769 141845 0.999996 - . ID=CGI_10010638; scaffold1569 GLEAN promoter 141846 142845 0.999996 - . ID=CGI_10010638; scaffold1569 GLEAN mRNA 141921 153101 1 - . ID=CGI_10010639; scaffold1569 TRF Tandem_Repeat 144129 144170 77 + . . scaffold1569 GLEAN promoter 153102 154101 1 - . ID=CGI_10010639; scaffold1569 GLEAN mRNA 158757 199245 0.999179 - . ID=CGI_10010640; scaffold1569 TRF Tandem_Repeat 163810 164080 200 + . . scaffold1569 TRF Tandem_Repeat 163860 164086 206 + . . scaffold1569 TRF Tandem_Repeat 166980 167048 104 + . . scaffold1569 TRF Tandem_Repeat 171315 171364 100 + . . scaffold1569 TRF Tandem_Repeat 179139 179179 82 + . . scaffold1569 TRF Tandem_Repeat 186985 187821 1219 + . . scaffold1569 TRF Tandem_Repeat 187990 188032 54 + . . scaffold1569 TRF Tandem_Repeat 192075 192105 53 + . . scaffold1569 TRF Tandem_Repeat 192813 193772 1291 + . . scaffold1569 GLEAN promoter 199246 200245 0.999179 - . ID=CGI_10010640; scaffold1569 GLEAN mRNA 209232 222136 0.99923 - . ID=CGI_10010641; scaffold1569 TRF Tandem_Repeat 220720 220999 389 + . . scaffold1569 GLEAN promoter 222137 223136 0.99923 - . ID=CGI_10010641; scaffold1569 GLEAN promoter 225988 226987 0.995609 + . ID=CGI_10010642; scaffold1569 GLEAN mRNA 226988 229275 0.995609 + . ID=CGI_10010642; scaffold1569 TRF Tandem_Repeat 227892 228082 145 + . . scaffold1569 GLEAN promoter 229767 230766 0.382692 + . ID=CGI_10010643; scaffold1569 GLEAN mRNA 230767 236059 0.382692 + . ID=CGI_10010643; scaffold1569 TRF Tandem_Repeat 231618 231663 65 + . . scaffold1569 TRF Tandem_Repeat 231626 231660 52 + . . scaffold1569 TRF Tandem_Repeat 233089 233774 1029 + . . scaffold1569 GLEAN mRNA 239315 240461 0.935521 - . ID=CGI_10010644; scaffold1569 GLEAN promoter 240462 241461 0.935521 - . ID=CGI_10010644; scaffold1569 TRF Tandem_Repeat 243166 243870 967 + . . scaffold1569 TRF Tandem_Repeat 250413 250445 66 + . . scaffold1569 TRF Tandem_Repeat 251956 252649 935 + . . scaffold1569 TRF Tandem_Repeat 251956 252649 929 + . . scaffold1569 WUBlastX DNA_TcMar-Tc1 259837 260583 332 - . . scaffold1569 WUBlastX DNA_TcMar-Tc1 259837 260721 297 - . . scaffold1569 WUBlastX DNA_TcMar-Tc1 260646 260879 48 - . . scaffold157 TRF Tandem_Repeat 914 969 112 + . . scaffold157 GLEAN promoter 949 1948 0.999372 + . ID=CGI_10021220; scaffold157 GLEAN mRNA 1949 2380 0.999372 + . ID=CGI_10021220; scaffold157 WUBlastX LTR_Ngaro 3227 3382 77 + . . scaffold157 WUBlastX LTR_Ngaro 3254 3430 68 + . . scaffold157 WUBlastX LTR_Ngaro 3436 3798 66 + . . scaffold157 WUBlastX LTR_Ngaro 3457 3717 83 + . . scaffold157 WUBlastX LTR_Ngaro 3523 3717 92 + . . scaffold157 WUBlastX LTR_Gypsy 4132 6078 1702 + . . scaffold157 WUBlastX LTR_Gypsy 5326 6231 217 + . . scaffold157 WUBlastX LTR_Gypsy 12470 15361 2628 + . . scaffold157 WUBlastX LTR_Gypsy 15295 16908 1401 + . . scaffold157 WUBlastX LTR_Copia 17483 17533 20 + . . scaffold157 WUBlastX LTR_Gypsy 18113 18220 20 + . . scaffold157 WUBlastX LTR_Gypsy 18137 19399 1063 + . . scaffold157 GLEAN mRNA 20175 26168 0.972051 - . ID=CGI_10021221; scaffold157 GLEAN promoter 26169 27168 0.972051 - . ID=CGI_10021221; scaffold157 TRF Tandem_Repeat 31291 31384 156 + . . scaffold157 GLEAN mRNA 35688 40690 1 - . ID=CGI_10021222; scaffold157 GLEAN promoter 40691 41690 1 - . ID=CGI_10021222; scaffold157 GLEAN mRNA 41175 61381 0.695106 - . ID=CGI_10021223; scaffold157 TRF Tandem_Repeat 53983 54808 857 + . . scaffold157 GLEAN promoter 61382 62381 0.695106 - . ID=CGI_10021223; scaffold157 TRF Tandem_Repeat 62008 62108 73 + . . scaffold157 GLEAN promoter 65459 66458 1 + . ID=CGI_10021224; scaffold157 GLEAN mRNA 66459 67613 1 + . ID=CGI_10021224; scaffold157 GLEAN mRNA 68605 82734 0.999938 - . ID=CGI_10021225; scaffold157 GLEAN promoter 74676 75675 1 + . ID=CGI_10021226; scaffold157 GLEAN mRNA 75676 77738 1 + . ID=CGI_10021226; scaffold157 TRF Tandem_Repeat 76283 76319 74 + . . scaffold157 TRF Tandem_Repeat 78085 78135 102 + . . scaffold157 GLEAN promoter 78196 79195 1 + . ID=CGI_10021227; scaffold157 GLEAN mRNA 79196 80800 1 + . ID=CGI_10021227; scaffold157 TRF Tandem_Repeat 79456 79489 68 + . . scaffold157 GLEAN promoter 81793 82792 0.991247 + . ID=CGI_10021228; scaffold157 GLEAN promoter 82735 83734 0.999938 - . ID=CGI_10021225; scaffold157 GLEAN mRNA 82793 83263 0.991247 + . ID=CGI_10021228; scaffold157 WUBlastX LINE_RTE-BovB 89540 89950 37 + . . scaffold157 WUBlastX LINE_RTE-X 89615 90283 215 + . . scaffold157 WUBlastX LINE_RTE-X 90286 90609 63 + . . scaffold157 WUBlastX LINE_RTE-X 90295 90567 67 + . . scaffold157 WUBlastX LINE_RTE-X 90573 90656 22 + . . scaffold157 WUBlastX LINE_RTE-X 90573 90626 27 + . . scaffold157 TRF Tandem_Repeat 91562 91641 56 + . . scaffold157 TRF Tandem_Repeat 92060 92106 94 + . . scaffold157 GLEAN promoter 96476 97475 0.987683 + . ID=CGI_10021229; scaffold157 GLEAN mRNA 97476 99942 0.987683 + . ID=CGI_10021229; scaffold157 GLEAN mRNA 104374 107577 0.794457 - . ID=CGI_10021230; scaffold157 TRF Tandem_Repeat 106344 106536 242 + . . scaffold157 GLEAN promoter 107578 108577 0.794457 - . ID=CGI_10021230; scaffold157 GLEAN promoter 108851 109850 0.904988 + . ID=CGI_10021231; scaffold157 GLEAN mRNA 109851 125954 0.904988 + . ID=CGI_10021231; scaffold157 TRF Tandem_Repeat 120783 120809 54 + . . scaffold157 GLEAN promoter 128639 129638 0.998806 + . ID=CGI_10021232; scaffold157 GLEAN mRNA 129639 140414 0.998806 + . ID=CGI_10021232; scaffold157 GLEAN promoter 142536 143535 0.584787 + . ID=CGI_10021233; scaffold157 GLEAN mRNA 143536 202006 0.584787 + . ID=CGI_10021233; scaffold157 TRF Tandem_Repeat 158088 158119 64 + . . scaffold157 TRF Tandem_Repeat 170735 171530 1234 + . . scaffold157 GLEAN mRNA 174989 176302 0.999661 - . ID=CGI_10021234; scaffold157 GLEAN promoter 176303 177302 0.999661 - . ID=CGI_10021234; scaffold157 TRF Tandem_Repeat 198743 199071 371 + . . scaffold157 GLEAN mRNA 203897 228375 0.998184 - . ID=CGI_10021235; scaffold157 GLEAN promoter 208274 209273 1 + . ID=CGI_10021236; scaffold157 GLEAN mRNA 209274 219897 1 + . ID=CGI_10021236; scaffold157 TRF Tandem_Repeat 223235 223273 51 + . . scaffold157 GLEAN promoter 228376 229375 0.998184 - . ID=CGI_10021235; scaffold157 GLEAN promoter 229295 230294 0.639751 + . ID=CGI_10021237; scaffold157 GLEAN mRNA 230295 238678 0.639751 + . ID=CGI_10021237; scaffold157 TRF Tandem_Repeat 233477 233520 88 + . . scaffold157 GLEAN mRNA 239752 246888 0.999881 - . ID=CGI_10021238; scaffold157 TRF Tandem_Repeat 243745 243881 220 + . . scaffold157 GLEAN promoter 244767 245766 0.799049 + . ID=CGI_10021239; scaffold157 GLEAN mRNA 245767 253618 0.799049 + . ID=CGI_10021239; scaffold157 GLEAN promoter 246889 247888 0.999881 - . ID=CGI_10021238; scaffold157 TRF Tandem_Repeat 247337 247505 293 + . . scaffold157 TRF Tandem_Repeat 248531 248572 84 + . . scaffold157 GLEAN mRNA 257032 258044 0.999999 - . ID=CGI_10021240; scaffold157 GLEAN promoter 258045 259044 0.999999 - . ID=CGI_10021240; scaffold157 GLEAN promoter 265818 266817 0.999986 + . ID=CGI_10021241; scaffold157 GLEAN mRNA 266818 276233 0.999986 + . ID=CGI_10021241; scaffold157 TRF Tandem_Repeat 273082 273119 76 + . . scaffold157 GLEAN promoter 275454 276453 0.999675 + . ID=CGI_10021242; scaffold157 GLEAN mRNA 276454 282373 0.999675 + . ID=CGI_10021242; scaffold157 GLEAN mRNA 291635 298725 0.777738 - . ID=CGI_10021243; scaffold157 GLEAN promoter 298190 299189 0.990213 + . ID=CGI_10021244; scaffold157 GLEAN promoter 298726 299725 0.777738 - . ID=CGI_10021243; scaffold157 GLEAN mRNA 299190 306252 0.990213 + . ID=CGI_10021244; scaffold157 WUBlastX LTR_DIRS 333123 334043 440 - . . scaffold157 WUBlastX LTR_DIRS 333997 334629 89 - . . scaffold157 TRF Tandem_Repeat 334923 335206 261 + . . scaffold157 TRF Tandem_Repeat 334923 335204 242 + . . scaffold157 TRF Tandem_Repeat 334952 335206 245 + . . scaffold157 TRF Tandem_Repeat 335285 335474 213 + . . scaffold157 TRF Tandem_Repeat 336322 336554 285 + . . scaffold157 TRF Tandem_Repeat 336322 336554 249 + . . scaffold157 TRF Tandem_Repeat 337964 339065 1518 + . . scaffold157 TRF Tandem_Repeat 340279 340329 102 + . . scaffold157 GLEAN promoter 340538 341537 1 + . ID=CGI_10021245; scaffold157 GLEAN mRNA 341538 342971 1 + . ID=CGI_10021245; scaffold157 GLEAN promoter 342531 343530 0.996732 + . ID=CGI_10021246; scaffold157 GLEAN mRNA 343531 362206 0.996732 + . ID=CGI_10021246; scaffold157 GLEAN mRNA 352044 352631 0.99998 - . ID=CGI_10021247; scaffold157 GLEAN promoter 352632 353631 0.99998 - . ID=CGI_10021247; scaffold157 GLEAN promoter 367029 368028 1 + . ID=CGI_10021248; scaffold157 GLEAN mRNA 368029 374109 1 + . ID=CGI_10021248; scaffold157 GLEAN promoter 376092 377091 0.999999 + . ID=CGI_10021249; scaffold157 TRF Tandem_Repeat 376840 376949 121 + . . scaffold157 GLEAN mRNA 377092 382534 0.999999 + . ID=CGI_10021249; scaffold157 TRF Tandem_Repeat 377617 377876 259 + . . scaffold157 TRF Tandem_Repeat 377669 377878 226 + . . scaffold157 TRF Tandem_Repeat 381623 381756 74 + . . scaffold157 TRF Tandem_Repeat 381837 381941 70 + . . scaffold157 GLEAN mRNA 383774 384241 0.593391 - . ID=CGI_10021250; scaffold157 GLEAN promoter 384242 385241 0.593391 - . ID=CGI_10021250; scaffold157 GLEAN promoter 385616 386615 1 + . ID=CGI_10021251; scaffold157 GLEAN mRNA 386616 387582 1 + . ID=CGI_10021251; scaffold157 GLEAN promoter 388218 389217 0.999926 + . ID=CGI_10021252; scaffold157 GLEAN mRNA 389218 393480 0.999926 + . ID=CGI_10021252; scaffold157 TRF Tandem_Repeat 392657 392710 108 + . . scaffold157 TRF Tandem_Repeat 395106 395197 98 + . . scaffold157 GLEAN promoter 395541 396540 0.549464 + . ID=CGI_10021253; scaffold157 GLEAN mRNA 396541 396953 0.549464 + . ID=CGI_10021253; scaffold157 GLEAN mRNA 401502 409644 0.999676 - . ID=CGI_10021254; scaffold157 TRF Tandem_Repeat 405004 405061 57 + . . scaffold157 TRF Tandem_Repeat 405004 405061 66 + . . scaffold157 GLEAN promoter 408810 409809 1 + . ID=CGI_10021255; scaffold157 GLEAN promoter 409645 410644 0.999676 - . ID=CGI_10021254; scaffold157 GLEAN mRNA 409810 411600 1 + . ID=CGI_10021255; scaffold157 GLEAN mRNA 413425 424054 0.987713 - . ID=CGI_10021256; scaffold157 TRF Tandem_Repeat 420524 420587 128 + . . scaffold157 GLEAN promoter 424055 425054 0.987713 - . ID=CGI_10021256; scaffold157 GLEAN mRNA 426765 450812 0.974046 - . ID=CGI_10021257; scaffold157 TRF Tandem_Repeat 439644 439792 178 + . . scaffold157 GLEAN promoter 450813 451812 0.974046 - . ID=CGI_10021257; scaffold157 TRF Tandem_Repeat 453553 453709 161 + . . scaffold157 TRF Tandem_Repeat 453996 454128 178 + . . scaffold157 TRF Tandem_Repeat 454213 454299 104 + . . scaffold157 TRF Tandem_Repeat 463508 463607 69 + . . scaffold157 GLEAN promoter 464011 465010 0.558382 + . ID=CGI_10021259; scaffold157 GLEAN mRNA 464334 464792 0.999995 - . ID=CGI_10021258; scaffold157 GLEAN promoter 464793 465792 0.999995 - . ID=CGI_10021258; scaffold157 GLEAN mRNA 465011 465596 0.558382 + . ID=CGI_10021259; scaffold157 GLEAN promoter 477503 478502 1 + . ID=CGI_10021260; scaffold157 GLEAN mRNA 478503 487949 1 + . ID=CGI_10021260; scaffold157 GLEAN mRNA 488397 498832 0.590798 - . ID=CGI_10021261; scaffold157 GLEAN promoter 498097 499096 0.999943 + . ID=CGI_10021262; scaffold157 GLEAN promoter 498833 499832 0.590798 - . ID=CGI_10021261; scaffold157 GLEAN mRNA 499097 505243 0.999943 + . ID=CGI_10021262; scaffold157 GLEAN promoter 508844 509843 0.999956 + . ID=CGI_10021263; scaffold157 TRF Tandem_Repeat 509451 509497 78 + . . scaffold157 GLEAN mRNA 509844 518491 0.999956 + . ID=CGI_10021263; scaffold157 GLEAN promoter 522184 523183 0.999956 + . ID=CGI_10021264; scaffold157 GLEAN mRNA 523184 528086 0.999956 + . ID=CGI_10021264; scaffold157 TRF Tandem_Repeat 528387 528438 59 + . . scaffold157 GLEAN promoter 529193 530192 1 + . ID=CGI_10021265; scaffold157 GLEAN mRNA 530193 535491 1 + . ID=CGI_10021265; scaffold157 TRF Tandem_Repeat 531390 532946 2247 + . . scaffold157 TRF Tandem_Repeat 534372 534402 62 + . . scaffold157 GLEAN mRNA 540555 541949 0.999983 - . ID=CGI_10021266; scaffold157 GLEAN promoter 541950 542949 0.999983 - . ID=CGI_10021266; scaffold157 GLEAN mRNA 543634 549432 1 - . ID=CGI_10021267; scaffold157 GLEAN promoter 548777 549776 0.777767 + . ID=CGI_10021268; scaffold157 GLEAN promoter 549433 550432 1 - . ID=CGI_10021267; scaffold157 GLEAN mRNA 549777 554791 0.777767 + . ID=CGI_10021268; scaffold157 TRF Tandem_Repeat 553447 553747 503 + . . scaffold157 GLEAN mRNA 557729 559188 1 - . ID=CGI_10021269; scaffold157 GLEAN promoter 558523 559522 1 + . ID=CGI_10021270; scaffold157 GLEAN promoter 559189 560188 1 - . ID=CGI_10021269; scaffold157 GLEAN mRNA 559523 566866 1 + . ID=CGI_10021270; scaffold157 GLEAN promoter 579643 580642 0.99996 + . ID=CGI_10021271; scaffold157 GLEAN mRNA 580643 588934 0.99996 + . ID=CGI_10021271; scaffold157 TRF Tandem_Repeat 583486 583543 50 + . . scaffold157 GLEAN mRNA 590475 594970 1 - . ID=CGI_10021272; scaffold157 GLEAN promoter 594971 595970 1 - . ID=CGI_10021272; scaffold157 GLEAN promoter 595346 596345 0.999675 + . ID=CGI_10021273; scaffold157 GLEAN mRNA 596346 599517 0.999675 + . ID=CGI_10021273; scaffold157 TRF Tandem_Repeat 598408 598460 106 + . . scaffold157 TRF Tandem_Repeat 599003 599043 55 + . . scaffold157 WUBlastX LINE_RTE-X 600081 600374 72 + . . scaffold157 TRF Tandem_Repeat 607013 607045 66 + . . scaffold157 TRF Tandem_Repeat 607183 607230 96 + . . scaffold157 GLEAN promoter 608789 609788 0.999984 + . ID=CGI_10021274; scaffold157 GLEAN mRNA 609789 611453 0.999984 + . ID=CGI_10021274; scaffold157 GLEAN mRNA 613262 618841 1 - . ID=CGI_10021275; scaffold157 TRF Tandem_Repeat 614163 614519 259 + . . scaffold157 GLEAN promoter 618209 619208 0.728523 + . ID=CGI_10021276; scaffold157 GLEAN promoter 618842 619841 1 - . ID=CGI_10021275; scaffold157 GLEAN mRNA 619209 642076 0.728523 + . ID=CGI_10021276; scaffold157 TRF Tandem_Repeat 623439 623514 152 + . . scaffold157 GLEAN mRNA 642849 645096 0.935808 - . ID=CGI_10021277; scaffold157 GLEAN promoter 645097 646096 0.935808 - . ID=CGI_10021277; scaffold157 WUBlastX LTR_Gypsy 646654 647274 175 + . . scaffold157 WUBlastX LTR_Gypsy 646816 647280 203 + . . scaffold157 WUBlastX LTR_Gypsy 647243 647821 113 + . . scaffold157 WUBlastX LTR_Gypsy 647267 647623 277 + . . scaffold157 WUBlastX LTR_Gypsy 647838 648773 564 + . . scaffold157 WUBlastX LTR_Copia 648099 648911 127 + . . scaffold157 WUBlastX LTR_Gypsy 648880 649143 57 + . . scaffold157 WUBlastX LTR_Gypsy 648916 649083 59 + . . scaffold157 WUBlastX LTR_Pao 649103 649390 49 + . . scaffold157 WUBlastX LTR_Pao 649205 649339 50 + . . scaffold157 WUBlastX LTR_Pao 649232 649333 56 + . . scaffold157 WUBlastX LINE_L1-Tx1 657813 658292 38 + . . scaffold157 WUBlastX LINE_L1-Tx1 657933 658400 56 + . . scaffold157 WUBlastX LINE_L1-Tx1 658038 658403 74 + . . scaffold157 WUBlastX LINE_L1-Tx1 658095 658529 51 + . . scaffold157 WUBlastX LINE_L1-Tx1 658104 658403 93 + . . scaffold157 WUBlastX LINE_L1-Tx1 658426 658566 33 + . . scaffold157 WUBlastX LINE_L1-Tx1 658565 658627 21 + . . scaffold157 WUBlastX LINE_L1 658574 658624 25 + . . scaffold157 GLEAN mRNA 659789 663339 0.588561 - . ID=CGI_10021278; scaffold157 GLEAN promoter 663340 664339 0.588561 - . ID=CGI_10021278; scaffold157 WUBlastX LTR_Gypsy 665229 666002 173 + . . scaffold157 GLEAN mRNA 666141 668267 0.589162 - . ID=CGI_10021279; scaffold157 GLEAN promoter 668268 669267 0.589162 - . ID=CGI_10021279; scaffold157 GLEAN promoter 672211 673210 0.999372 + . ID=CGI_10021280; scaffold157 GLEAN mRNA 673211 673516 0.999372 + . ID=CGI_10021280; scaffold1570 WUBlastX LTR_Ngaro 3327 3881 44 - . . scaffold1570 WUBlastX LTR_Ngaro 3459 3824 50 - . . scaffold1570 WUBlastX LTR_Ngaro 4892 5518 22 - . . scaffold1570 WUBlastX LTR_Ngaro 5110 5346 55 - . . scaffold1570 WUBlastX LTR_Ngaro 5348 5518 56 - . . scaffold1570 GLEAN promoter 9930 10929 0.990546 + . ID=CGI_10002599; scaffold1570 GLEAN mRNA 10930 17344 0.990546 + . ID=CGI_10002599; scaffold1570 WUBlastX DNA_PiggyBac 14565 14747 42 + . . scaffold1570 WUBlastX DNA_P 16312 17103 118 + . . scaffold1570 GLEAN mRNA 17596 27206 0.918041 - . ID=CGI_10002600; scaffold1570 TRF Tandem_Repeat 18066 18751 1036 + . . scaffold1570 TRF Tandem_Repeat 23934 23994 122 + . . scaffold1570 GLEAN promoter 27207 28206 0.918041 - . ID=CGI_10002600; scaffold1570 WUBlastX LTR_Gypsy 29805 30380 48 + . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 29904 30389 57 + . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 29946 30500 49 + . . scaffold1570 WUBlastX LTR_Gypsy 30570 30899 20 + . . scaffold1570 WUBlastX LTR_Gypsy 30573 30770 21 + . . scaffold1570 WUBlastX LTR_Gypsy 30840 30890 20 + . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 30875 34504 1422 + . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 33215 34750 533 + . . scaffold1570 GLEAN promoter 34181 35180 0.999642 + . ID=CGI_10002601; scaffold1570 WUBlastX LTR_Pao 34625 34780 49 + . . scaffold1570 GLEAN mRNA 35181 37286 0.999642 + . ID=CGI_10002601; scaffold1570 WUBlastX LTR_Gypsy 39237 39869 181 + . . scaffold1570 WUBlastX LTR_Gypsy 39321 39842 219 + . . scaffold1570 WUBlastX LTR_Gypsy 39336 40031 146 + . . scaffold1570 WUBlastX LTR_Gypsy 40161 40445 54 + . . scaffold1570 WUBlastX LTR_Gypsy 40221 41759 839 + . . scaffold1570 WUBlastX LTR_Gypsy 41136 42071 229 + . . scaffold1570 WUBlastX LTR_Gypsy 42119 43093 363 + . . scaffold1570 WUBlastX LTR_Gypsy 42266 43462 855 + . . scaffold1570 WUBlastX LTR_Gypsy 44400 45242 111 - . . scaffold1570 WUBlastX LTR_Gypsy-Cigr 44568 46400 298 - . . scaffold1570 WUBlastX LTR_ERV1 46122 46481 63 - . . scaffold1570 WUBlastX LINE_L1 50363 50572 39 + . . scaffold1571 TRF Tandem_Repeat 66 221 186 + . . scaffold1571 TRF Tandem_Repeat 1352 1405 99 + . . scaffold1571 WUBlastX LINE_RTE-X 3260 3538 55 + . . scaffold1571 WUBlastX LINE_RTE-X 3308 3538 139 + . . scaffold1571 WUBlastX LINE_RTE-X 4011 4136 36 + . . scaffold1571 WUBlastX LINE_RTE-X 4066 4878 78 + . . scaffold1571 WUBlastX LINE_RTE-X 4192 4896 287 + . . scaffold1571 GLEAN mRNA 9485 12282 1 - . ID=CGI_10012165; scaffold1571 GLEAN promoter 12283 13282 1 - . ID=CGI_10012165; scaffold1571 GLEAN mRNA 34119 40158 0.994275 - . ID=CGI_10012166; scaffold1571 GLEAN promoter 40159 41158 0.994275 - . ID=CGI_10012166; scaffold1571 TRF Tandem_Repeat 42834 43344 602 + . . scaffold1571 TRF Tandem_Repeat 43657 44185 419 + . . scaffold1571 TRF Tandem_Repeat 43705 44289 265 + . . scaffold1571 TRF Tandem_Repeat 43705 44185 291 + . . scaffold1571 TRF Tandem_Repeat 43726 44185 171 + . . scaffold1571 TRF Tandem_Repeat 43832 44141 306 + . . scaffold1571 TRF Tandem_Repeat 63966 64026 50 + . . scaffold1571 GLEAN promoter 82837 83836 0.58521 + . ID=CGI_10012167; scaffold1571 GLEAN mRNA 83837 93685 0.58521 + . ID=CGI_10012167; scaffold1571 GLEAN promoter 93540 94539 0.562917 + . ID=CGI_10012168; scaffold1571 GLEAN mRNA 94540 118770 0.562917 + . ID=CGI_10012168; scaffold1571 TRF Tandem_Repeat 109973 110020 96 + . . scaffold1571 TRF Tandem_Repeat 110329 110365 74 + . . scaffold1571 TRF Tandem_Repeat 117455 118657 1674 + . . scaffold1571 GLEAN mRNA 125253 131864 1 - . ID=CGI_10012169; scaffold1571 TRF Tandem_Repeat 126262 126967 1169 + . . scaffold1571 TRF Tandem_Repeat 129613 129683 70 + . . scaffold1571 GLEAN promoter 131865 132864 1 - . ID=CGI_10012169; scaffold1571 GLEAN promoter 134177 135176 0.999675 + . ID=CGI_10012170; scaffold1571 GLEAN mRNA 135177 138387 0.999675 + . ID=CGI_10012170; scaffold1571 TRF Tandem_Repeat 138508 138545 60 + . . scaffold1571 GLEAN promoter 139324 140323 1 + . ID=CGI_10012171; scaffold1571 GLEAN mRNA 140324 144334 1 + . ID=CGI_10012171; scaffold1571 TRF Tandem_Repeat 168297 168631 424 + . . scaffold1571 TRF Tandem_Repeat 168322 168647 439 + . . scaffold1571 WUBlastX LINE_L1 170885 170986 32 - . . scaffold1571 WUBlastX LINE_L1-Tx1 171373 171969 337 - . . scaffold1571 WUBlastX LINE_L1 171418 172092 70 - . . scaffold1571 TRF Tandem_Repeat 177378 177423 92 + . . scaffold1571 WUBlastX DNA_TcMar-Pogo 177499 177894 282 - . . scaffold1571 WUBlastX DNA_TcMar-Pogo 177878 178462 305 - . . scaffold1571 TRF Tandem_Repeat 182318 182343 52 + . . scaffold1571 TRF Tandem_Repeat 182455 183217 1088 + . . scaffold1571 TRF Tandem_Repeat 184032 184397 106 + . . scaffold1571 TRF Tandem_Repeat 187842 188577 1084 + . . scaffold1571 TRF Tandem_Repeat 189383 189480 182 + . . scaffold1571 TRF Tandem_Repeat 190788 191710 1239 + . . scaffold1571 TRF Tandem_Repeat 192697 192774 52 + . . scaffold1571 TRF Tandem_Repeat 195617 195683 80 + . . scaffold1571 TRF Tandem_Repeat 198093 198143 102 + . . scaffold1571 TRF Tandem_Repeat 198329 198361 66 + . . scaffold1571 TRF Tandem_Repeat 198359 198402 88 + . . scaffold1571 TRF Tandem_Repeat 198897 198963 80 + . . scaffold1571 WUBlastX DNA_TcMar-Tc1 208704 208877 56 + . . scaffold1571 TRF Tandem_Repeat 217642 218365 819 + . . scaffold1571 GLEAN promoter 225724 226723 0.999995 + . ID=CGI_10012172; scaffold1571 TRF Tandem_Repeat 226130 226157 56 + . . scaffold1571 GLEAN mRNA 226724 233778 0.999995 + . ID=CGI_10012172; scaffold1571 TRF Tandem_Repeat 247220 247278 82 + . . scaffold1571 TRF Tandem_Repeat 247220 247278 70 + . . scaffold1571 TRF Tandem_Repeat 247229 247282 67 + . . scaffold1571 WUBlastX LINE_L2 251882 251920 23 + . . scaffold1571 WUBlastX LINE_L2 251938 252837 104 + . . scaffold1571 TRF Tandem_Repeat 258433 258470 58 + . . scaffold1571 TRF Tandem_Repeat 258470 258533 128 + . . scaffold1571 TRF Tandem_Repeat 259385 260903 1691 + . . scaffold1571 TRF Tandem_Repeat 259385 260903 1632 + . . scaffold1571 WUBlastX LINE_L1 265588 266076 107 - . . scaffold1571 WUBlastX LINE_L1-Tx1 265648 266046 153 - . . scaffold1571 WUBlastX LINE_L1-Tx1 266109 266771 118 - . . scaffold1571 WUBlastX LINE_L1-Tx1 266725 267618 591 - . . scaffold1571 WUBlastX LINE_L1 266737 267810 146 - . . scaffold1571 WUBlastX LINE_CR1 268575 268628 22 - . . scaffold1571 WUBlastX LTR_Pao 271628 272248 256 + . . scaffold1571 WUBlastX LTR_Pao 272224 272472 93 + . . scaffold1571 WUBlastX LTR_Pao 272319 272657 114 + . . scaffold1571 WUBlastX LTR_Pao 272427 272657 121 + . . scaffold1571 WUBlastX LTR_Pao 272469 272657 144 + . . scaffold1571 WUBlastX LTR_Pao 272502 272900 59 + . . scaffold1571 WUBlastX LTR_Pao 272948 273148 55 + . . scaffold1571 WUBlastX LTR_Pao 273216 273296 34 + . . scaffold1571 WUBlastX LTR_Pao 273244 273456 72 + . . scaffold1571 WUBlastX LTR_Pao 273295 273462 160 + . . scaffold1571 WUBlastX LTR_Pao 273337 273507 58 + . . scaffold1571 WUBlastX LTR_Pao 273337 273570 31 + . . scaffold1571 WUBlastX LTR_Pao 273899 273961 23 + . . scaffold1571 GLEAN mRNA 278083 285006 0.999917 - . ID=CGI_10012173; scaffold1571 GLEAN promoter 285007 286006 0.999917 - . ID=CGI_10012173; scaffold1571 WUBlastX LINE_L1 288432 288557 44 + . . scaffold1571 WUBlastX LINE_L1 288581 288682 31 + . . scaffold1571 WUBlastX LINE_L1-Tx1 307947 308222 37 - . . scaffold1571 WUBlastX LINE_L1-Tx1 307977 308192 78 - . . scaffold1571 TRF Tandem_Repeat 308668 308707 80 + . . scaffold1571 TRF Tandem_Repeat 309497 309697 329 + . . scaffold1571 TRF Tandem_Repeat 309501 309585 57 + . . scaffold1571 GLEAN promoter 313211 314210 1 + . ID=CGI_10012174; scaffold1571 GLEAN mRNA 314211 317035 1 + . ID=CGI_10012174; scaffold1572 TRF Tandem_Repeat 1242 1266 50 + . . scaffold1572 GLEAN promoter 1269 2268 1 + . ID=CGI_10007810; scaffold1572 GLEAN mRNA 2269 5590 1 + . ID=CGI_10007810; scaffold1572 TRF Tandem_Repeat 4679 4737 50 + . . scaffold1572 TRF Tandem_Repeat 11179 11217 51 + . . scaffold1572 TRF Tandem_Repeat 14803 14913 222 + . . scaffold1572 TRF Tandem_Repeat 16977 17010 59 + . . scaffold1572 GLEAN mRNA 41048 51257 0.999943 - . ID=CGI_10007811; scaffold1572 TRF Tandem_Repeat 47202 47440 424 + . . scaffold1572 GLEAN promoter 51258 52257 0.999943 - . ID=CGI_10007811; scaffold1572 WUBlastX LINE_L1-Tx1 53735 54883 136 - . . scaffold1572 GLEAN promoter 55667 56666 0.99996 + . ID=CGI_10007812; scaffold1572 GLEAN mRNA 56667 66844 0.99996 + . ID=CGI_10007812; scaffold1572 TRF Tandem_Repeat 60419 60456 58 + . . scaffold1572 GLEAN mRNA 67948 69217 1 - . ID=CGI_10007813; scaffold1572 GLEAN promoter 69218 70217 1 - . ID=CGI_10007813; scaffold1572 GLEAN mRNA 74078 76695 1 - . ID=CGI_10007814; scaffold1572 GLEAN promoter 76696 77695 1 - . ID=CGI_10007814; scaffold1572 GLEAN mRNA 76713 78044 0.672351 - . ID=CGI_10007815; scaffold1572 GLEAN promoter 77329 78328 1 + . ID=CGI_10007816; scaffold1572 GLEAN promoter 78045 79044 0.672351 - . ID=CGI_10007815; scaffold1572 GLEAN mRNA 78329 81184 1 + . ID=CGI_10007816; scaffold1572 TRF Tandem_Repeat 80559 80609 75 + . . scaffold1572 TRF Tandem_Repeat 82341 82375 70 + . . scaffold1572 GLEAN mRNA 82485 85658 1 - . ID=CGI_10007817; scaffold1572 GLEAN promoter 85659 86658 1 - . ID=CGI_10007817; scaffold1572 GLEAN mRNA 87117 89899 0.728523 - . ID=CGI_10007818; scaffold1572 GLEAN promoter 89900 90899 0.728523 - . ID=CGI_10007818; scaffold1572 TRF Tandem_Repeat 95103 95148 92 + . . scaffold1572 TRF Tandem_Repeat 97032 97173 248 + . . scaffold1572 TRF Tandem_Repeat 97381 97560 121 + . . scaffold1572 GLEAN promoter 97792 98791 1 + . ID=CGI_10007819; scaffold1572 GLEAN mRNA 98792 115435 1 + . ID=CGI_10007819; scaffold1572 TRF Tandem_Repeat 105144 106012 1038 + . . scaffold1572 TRF Tandem_Repeat 109492 109798 157 + . . scaffold1572 TRF Tandem_Repeat 109526 109782 180 + . . scaffold1572 TRF Tandem_Repeat 113383 114076 449 + . . scaffold1572 TRF Tandem_Repeat 113384 114076 621 + . . scaffold1572 TRF Tandem_Repeat 113415 114076 447 + . . scaffold1572 GLEAN promoter 115699 116698 0.973001 + . ID=CGI_10007820; scaffold1572 GLEAN mRNA 116699 129290 0.973001 + . ID=CGI_10007820; scaffold1572 TRF Tandem_Repeat 123431 123577 161 + . . scaffold1572 TRF Tandem_Repeat 130261 130304 79 + . . scaffold1572 GLEAN mRNA 131644 134420 0.999415 - . ID=CGI_10007821; scaffold1572 GLEAN promoter 133689 134688 1 + . ID=CGI_10007822; scaffold1572 GLEAN promoter 134421 135420 0.999415 - . ID=CGI_10007821; scaffold1572 GLEAN mRNA 134689 143056 1 + . ID=CGI_10007822; scaffold1572 TRF Tandem_Repeat 136012 136770 1134 + . . scaffold1572 TRF Tandem_Repeat 138468 138520 106 + . . scaffold1572 TRF Tandem_Repeat 140730 141086 187 + . . scaffold1572 TRF Tandem_Repeat 141150 141292 109 + . . scaffold1572 TRF Tandem_Repeat 141151 141277 139 + . . scaffold1572 TRF Tandem_Repeat 150366 150541 264 + . . scaffold1572 TRF Tandem_Repeat 150542 150993 192 + . . scaffold1572 TRF Tandem_Repeat 150589 150967 406 + . . scaffold1572 TRF Tandem_Repeat 150630 151379 788 + . . scaffold1572 TRF Tandem_Repeat 151007 151980 783 + . . scaffold1572 TRF Tandem_Repeat 151424 151532 59 + . . scaffold1572 TRF Tandem_Repeat 152012 152320 399 + . . scaffold1572 TRF Tandem_Repeat 152206 152322 67 + . . scaffold1572 TRF Tandem_Repeat 153081 154341 1689 + . . scaffold1572 GLEAN mRNA 155656 161607 0.999144 - . ID=CGI_10007823; scaffold1572 TRF Tandem_Repeat 157354 157405 104 + . . scaffold1572 GLEAN promoter 161608 162607 0.999144 - . ID=CGI_10007823; scaffold1572 TRF Tandem_Repeat 162273 162994 611 + . . scaffold1572 TRF Tandem_Repeat 162273 162960 492 + . . scaffold1572 TRF Tandem_Repeat 162289 162979 510 + . . scaffold1572 TRF Tandem_Repeat 164900 164952 67 + . . scaffold1572 TRF Tandem_Repeat 169844 169887 81 + . . scaffold1572 TRF Tandem_Repeat 173152 173226 69 + . . scaffold1572 TRF Tandem_Repeat 173152 173194 68 + . . scaffold1572 TRF Tandem_Repeat 173160 173234 78 + . . scaffold1572 TRF Tandem_Repeat 179690 179956 330 + . . scaffold1572 TRF Tandem_Repeat 187643 187762 165 + . . scaffold1572 TRF Tandem_Repeat 187643 187761 159 + . . scaffold1572 GLEAN promoter 189216 190215 1 + . ID=CGI_10007824; scaffold1572 GLEAN mRNA 190216 190851 1 + . ID=CGI_10007824; scaffold1573 TRF Tandem_Repeat 2940 2987 96 + . . scaffold1573 GLEAN mRNA 5708 9290 1 - . ID=CGI_10002290; scaffold1573 GLEAN promoter 9291 10290 1 - . ID=CGI_10002290; scaffold1573 TRF Tandem_Repeat 30881 30920 53 + . . scaffold1573 TRF Tandem_Repeat 37634 37741 105 + . . scaffold1573 WUBlastX LINE_RTE-X 38033 38299 28 - . . scaffold1573 WUBlastX LINE_RTE-X 38226 38426 34 - . . scaffold1573 WUBlastX LINE_RTE-X 38530 38838 71 - . . scaffold1573 WUBlastX LINE_RTE-X 38635 38838 93 - . . scaffold1573 WUBlastX LINE_RTE-X 38834 39196 137 - . . scaffold1573 WUBlastX LINE_RTE-X 39190 39423 35 - . . scaffold1573 WUBlastX LINE_L2 39997 40113 21 - . . scaffold1573 TRF Tandem_Repeat 40148 40300 236 + . . scaffold1574 TRF Tandem_Repeat 515 759 255 + . . scaffold1574 TRF Tandem_Repeat 1384 1789 363 + . . scaffold1574 TRF Tandem_Repeat 1384 1790 325 + . . scaffold1574 WUBlastX LTR_Gypsy 6168 6254 22 + . . scaffold1574 WUBlastX LTR_Gypsy-Cigr 6662 7147 130 + . . scaffold1574 WUBlastX LTR_Gypsy 7035 7193 68 + . . scaffold1574 WUBlastX LTR_Gypsy 7050 7229 63 + . . scaffold1574 TRF Tandem_Repeat 7972 8012 82 + . . scaffold1574 TRF Tandem_Repeat 18162 18186 50 + . . scaffold1574 TRF Tandem_Repeat 20862 20920 59 + . . scaffold1574 WUBlastX LTR_Gypsy 21416 22348 126 + . . scaffold1574 WUBlastX LTR_Gypsy-Cigr 21638 22372 151 + . . scaffold1574 WUBlastX LTR_Gypsy 21890 22498 85 + . . scaffold1574 GLEAN mRNA 53027 57537 0.999965 - . ID=CGI_10016318; scaffold1574 TRF Tandem_Repeat 54978 55332 530 + . . scaffold1574 TRF Tandem_Repeat 55615 55733 150 + . . scaffold1574 GLEAN promoter 57538 58537 0.999965 - . ID=CGI_10016318; scaffold1574 GLEAN mRNA 60039 61837 0.660873 - . ID=CGI_10016319; scaffold1574 GLEAN promoter 61838 62837 0.660873 - . ID=CGI_10016319; scaffold1574 TRF Tandem_Repeat 73200 74223 1335 + . . scaffold1574 TRF Tandem_Repeat 74516 74554 78 + . . scaffold1574 GLEAN promoter 77319 78318 0.677897 + . ID=CGI_10016320; scaffold1574 GLEAN mRNA 78319 93305 0.677897 + . ID=CGI_10016320; scaffold1574 TRF Tandem_Repeat 83787 83877 155 + . . scaffold1574 TRF Tandem_Repeat 83954 84050 131 + . . scaffold1574 TRF Tandem_Repeat 87536 87611 120 + . . scaffold1574 TRF Tandem_Repeat 90866 90908 86 + . . scaffold1574 TRF Tandem_Repeat 92658 92788 118 + . . scaffold1574 TRF Tandem_Repeat 92658 92790 86 + . . scaffold1574 WUBlastX LINE_Penelope 92792 93496 172 + . . scaffold1574 WUBlastX LINE_Penelope 93538 93711 53 + . . scaffold1574 TRF Tandem_Repeat 100292 100337 92 + . . scaffold1574 TRF Tandem_Repeat 100366 100951 596 + . . scaffold1574 TRF Tandem_Repeat 100366 100953 662 + . . scaffold1574 TRF Tandem_Repeat 100366 100951 605 + . . scaffold1574 GLEAN promoter 102184 103183 1 + . ID=CGI_10016321; scaffold1574 GLEAN mRNA 103184 104705 1 + . ID=CGI_10016321; scaffold1574 WUBlastX LINE_RTE-X 112587 113015 68 - . . scaffold1574 GLEAN mRNA 112677 113012 0.965913 - . ID=CGI_10016322; scaffold1574 GLEAN promoter 113013 114012 0.965913 - . ID=CGI_10016322; scaffold1574 TRF Tandem_Repeat 115289 115322 61 + . . scaffold1574 TRF Tandem_Repeat 119751 120010 389 + . . scaffold1574 WUBlastX DNA_TcMar-Tc1 121281 121811 149 + . . scaffold1574 WUBlastX DNA_TcMar-Tc1 121748 122305 202 + . . scaffold1574 WUBlastX DNA_TcMar-Tc1 121844 122305 260 + . . scaffold1574 WUBlastX LINE_L1 126605 127189 64 - . . scaffold1574 WUBlastX LINE_DRE 127171 127473 49 - . . scaffold1574 WUBlastX LINE_L1 127177 127287 68 - . . scaffold1574 WUBlastX LINE_L1 127192 127422 55 - . . scaffold1574 WUBlastX LINE_L1-Tx1 127492 127536 20 - . . scaffold1574 WUBlastX LINE_L1-Tx1 127539 127619 20 - . . scaffold1574 WUBlastX LINE_L1 128368 128637 42 - . . scaffold1574 WUBlastX LINE_L1-Tx1 128371 128520 42 - . . scaffold1574 WUBlastX LINE_L1-Tx1 128535 128708 25 - . . scaffold1574 TRF Tandem_Repeat 148796 148848 106 + . . scaffold1574 TRF Tandem_Repeat 167415 167482 129 + . . scaffold1574 GLEAN promoter 175046 176045 0.813773 + . ID=CGI_10016323; scaffold1574 GLEAN mRNA 176046 194098 0.813773 + . ID=CGI_10016323; scaffold1574 TRF Tandem_Repeat 179399 179447 98 + . . scaffold1574 TRF Tandem_Repeat 179490 179523 59 + . . scaffold1574 TRF Tandem_Repeat 183077 183233 244 + . . scaffold1574 TRF Tandem_Repeat 184743 184777 52 + . . scaffold1574 TRF Tandem_Repeat 184788 185624 1275 + . . scaffold1574 TRF Tandem_Repeat 192632 192659 56 + . . scaffold1574 TRF Tandem_Repeat 199474 199508 63 + . . scaffold1574 TRF Tandem_Repeat 200493 200537 90 + . . scaffold1574 TRF Tandem_Repeat 201657 201696 80 + . . scaffold1574 GLEAN promoter 212046 213045 0.999661 + . ID=CGI_10016324; scaffold1574 GLEAN mRNA 213046 221277 0.999661 + . ID=CGI_10016324; scaffold1574 TRF Tandem_Repeat 213493 213563 142 + . . scaffold1574 TRF Tandem_Repeat 215350 215392 86 + . . scaffold1574 TRF Tandem_Repeat 215563 215589 54 + . . scaffold1574 TRF Tandem_Repeat 241271 241338 136 + . . scaffold1574 TRF Tandem_Repeat 242105 242151 94 + . . scaffold1574 GLEAN promoter 256630 257629 0.984888 + . ID=CGI_10016325; scaffold1574 GLEAN mRNA 257630 269496 0.984888 + . ID=CGI_10016325; scaffold1574 GLEAN promoter 271241 272240 1 + . ID=CGI_10016326; scaffold1574 GLEAN mRNA 272241 273829 1 + . ID=CGI_10016326; scaffold1574 TRF Tandem_Repeat 294964 294991 56 + . . scaffold1574 TRF Tandem_Repeat 297988 298116 91 + . . scaffold1574 TRF Tandem_Repeat 301000 301056 114 + . . scaffold1574 TRF Tandem_Repeat 302585 302693 110 + . . scaffold1574 TRF Tandem_Repeat 302587 302693 132 + . . scaffold1574 TRF Tandem_Repeat 303624 303664 82 + . . scaffold1574 GLEAN promoter 304006 305005 0.837234 + . ID=CGI_10016327; scaffold1574 GLEAN mRNA 305006 334748 0.837234 + . ID=CGI_10016327; scaffold1574 GLEAN mRNA 305637 305867 0.481188 - . ID=CGI_10016328; scaffold1574 GLEAN promoter 305868 306867 0.481188 - . ID=CGI_10016328; scaffold1574 TRF Tandem_Repeat 310929 310990 81 + . . scaffold1574 TRF Tandem_Repeat 320434 320695 325 + . . scaffold1574 TRF Tandem_Repeat 323731 323767 56 + . . scaffold1574 TRF Tandem_Repeat 326548 327310 1070 + . . scaffold1574 TRF Tandem_Repeat 328074 328242 80 + . . scaffold1574 TRF Tandem_Repeat 328131 328262 90 + . . scaffold1574 TRF Tandem_Repeat 328144 328212 70 + . . scaffold1574 TRF Tandem_Repeat 328144 328212 52 + . . scaffold1574 TRF Tandem_Repeat 328165 328277 91 + . . scaffold1574 GLEAN mRNA 336143 351996 0.45163 - . ID=CGI_10016329; scaffold1574 TRF Tandem_Repeat 340517 340549 57 + . . scaffold1574 TRF Tandem_Repeat 346325 346455 122 + . . scaffold1574 TRF Tandem_Repeat 347673 347712 71 + . . scaffold1574 GLEAN promoter 351997 352996 0.45163 - . ID=CGI_10016329; scaffold1574 TRF Tandem_Repeat 352600 352774 158 + . . scaffold1574 TRF Tandem_Repeat 352810 352979 205 + . . scaffold1574 GLEAN promoter 354411 355410 1 + . ID=CGI_10016330; scaffold1574 GLEAN mRNA 355411 357472 1 + . ID=CGI_10016330; scaffold1574 TRF Tandem_Repeat 356488 356525 60 + . . scaffold1574 TRF Tandem_Repeat 365446 365503 59 + . . scaffold1574 TRF Tandem_Repeat 365459 365501 61 + . . scaffold1574 TRF Tandem_Repeat 375812 375872 122 + . . scaffold1574 TRF Tandem_Repeat 378347 378581 452 + . . scaffold1574 TRF Tandem_Repeat 382157 382211 110 + . . scaffold1574 TRF Tandem_Repeat 391170 391238 138 + . . scaffold1574 GLEAN promoter 391417 392416 0.647136 + . ID=CGI_10016331; scaffold1574 GLEAN mRNA 392417 431082 0.647136 + . ID=CGI_10016331; scaffold1574 TRF Tandem_Repeat 404296 404327 57 + . . scaffold1574 GLEAN mRNA 424431 425637 0.999961 - . ID=CGI_10016332; scaffold1574 GLEAN promoter 425638 426637 0.999961 - . ID=CGI_10016332; scaffold1574 GLEAN promoter 430675 431674 0.999112 + . ID=CGI_10016333; scaffold1574 GLEAN mRNA 431675 438878 0.999112 + . ID=CGI_10016333; scaffold1574 GLEAN promoter 446917 447916 0.999999 + . ID=CGI_10016334; scaffold1574 GLEAN mRNA 447917 450023 0.999999 + . ID=CGI_10016334; scaffold1574 GLEAN promoter 451128 452127 0.999957 + . ID=CGI_10016335; scaffold1574 GLEAN mRNA 452128 459537 0.999957 + . ID=CGI_10016335; scaffold1574 WUBlastX LTR_Gypsy 452567 452884 48 + . . scaffold1574 WUBlastX LTR_Gypsy 452681 453022 47 + . . scaffold1574 WUBlastX LTR_Gypsy 452807 453163 39 + . . scaffold1574 WUBlastX LTR_Gypsy 453155 453481 48 + . . scaffold1574 TRF Tandem_Repeat 455249 455308 120 + . . scaffold1574 WUBlastX LINE_RTE-X 455676 457628 168 - . . scaffold1574 WUBlastX LINE_RTE-X 456162 457511 228 - . . scaffold1574 WUBlastX LINE_RTE-X 456630 457619 334 - . . scaffold1574 WUBlastX LINE_L2 456834 457931 188 - . . scaffold1574 WUBlastX LINE_I 457849 458280 69 - . . scaffold1574 WUBlastX LINE_Telomeric 458288 458536 51 - . . scaffold1574 WUBlastX LINE_Proto2 458294 458650 37 - . . scaffold1575 WUBlastX LINE_RTE-X 135 308 25 - . . scaffold1575 GLEAN mRNA 1415 11413 0.708557 - . ID=CGI_10004715; scaffold1575 GLEAN promoter 11033 12032 0.996819 + . ID=CGI_10004716; scaffold1575 GLEAN promoter 11414 12413 0.708557 - . ID=CGI_10004715; scaffold1575 GLEAN mRNA 12033 14665 0.996819 + . ID=CGI_10004716; scaffold1575 TRF Tandem_Repeat 13351 13418 129 + . . scaffold1575 TRF Tandem_Repeat 24371 24424 101 + . . scaffold1575 GLEAN promoter 24795 25794 0.918953 + . ID=CGI_10004717; scaffold1575 GLEAN mRNA 25795 27451 0.918953 + . ID=CGI_10004717; scaffold1575 WUBlastX LINE_RTE-X 34189 34854 91 - . . scaffold1575 WUBlastX LINE_RTE-X 34312 35394 693 - . . scaffold1575 WUBlastX LINE_RTE-X 35378 37642 1355 - . . scaffold1575 WUBlastX LINE_Jockey 37238 37789 39 - . . scaffold1575 GLEAN promoter 39676 40675 0.966739 + . ID=CGI_10004718; scaffold1575 GLEAN mRNA 40676 48214 0.966739 + . ID=CGI_10004718; scaffold1575 GLEAN promoter 48099 49098 1 + . ID=CGI_10004719; scaffold1575 GLEAN mRNA 49099 53156 1 + . ID=CGI_10004719; scaffold1575 GLEAN mRNA 54747 64275 0.592949 - . ID=CGI_10004720; scaffold1575 WUBlastX RC_Helitron 62336 62560 88 - . . scaffold1575 GLEAN promoter 64276 65275 0.592949 - . ID=CGI_10004720; scaffold1575 WUBlastX LTR_Gypsy 68042 68266 132 + . . scaffold1575 WUBlastX LTR_Gypsy 68048 68335 101 + . . scaffold1575 WUBlastX LTR_Gypsy 68048 68221 148 + . . scaffold1575 WUBlastX LTR_Gypsy 68572 68670 23 + . . scaffold1575 WUBlastX LTR_Gypsy 68596 70668 942 + . . scaffold1575 WUBlastX LTR_Gypsy 69253 70668 1079 + . . scaffold1575 WUBlastX LTR_Gypsy 70602 70937 257 + . . scaffold1575 WUBlastX LTR_Gypsy 70865 71395 416 + . . scaffold1575 WUBlastX LTR_Gypsy 71394 72035 321 + . . scaffold1575 WUBlastX LTR_Gypsy 71521 72249 149 + . . scaffold1575 WUBlastX LTR_Gypsy 72400 72450 22 + . . scaffold1575 WUBlastX LTR_Gypsy 72415 72450 24 + . . scaffold1575 WUBlastX LTR_Gypsy 72675 72935 163 + . . scaffold1575 WUBlastX LTR_Gypsy 72684 73004 91 + . . scaffold1575 GLEAN promoter 72929 73928 0.544627 + . ID=CGI_10004721; scaffold1575 GLEAN mRNA 73929 76913 0.544627 + . ID=CGI_10004721; scaffold1575 WUBlastX RC_Helitron 75707 75988 117 + . . scaffold1575 TRF Tandem_Repeat 91619 91789 112 + . . scaffold1575 TRF Tandem_Repeat 91619 91789 184 + . . scaffold1575 TRF Tandem_Repeat 91816 91998 168 + . . scaffold1575 TRF Tandem_Repeat 91858 91998 140 + . . scaffold1575 TRF Tandem_Repeat 92085 92171 113 + . . scaffold1575 TRF Tandem_Repeat 92856 92904 98 + . . scaffold1575 TRF Tandem_Repeat 93216 93261 83 + . . scaffold1575 GLEAN mRNA 95441 108781 0.999027 - . ID=CGI_10004722; scaffold1575 GLEAN promoter 98043 99042 0.999074 + . ID=CGI_10004723; scaffold1575 GLEAN mRNA 99043 104167 0.999074 + . ID=CGI_10004723; scaffold1575 TRF Tandem_Repeat 101330 101374 90 + . . scaffold1575 GLEAN promoter 108782 108859 0.999027 - . ID=CGI_10004722; scaffold1576 GLEAN promoter 1 847 0.777337 + . ID=CGI_10004467; scaffold1576 GLEAN mRNA 848 1936 0.777337 + . ID=CGI_10004467; scaffold1576 TRF Tandem_Repeat 6855 6900 74 + . . scaffold1576 WUBlastX LTR_DIRS 7556 9196 487 + . . scaffold1576 WUBlastX LTR_Gypsy 9143 9280 28 + . . scaffold1576 WUBlastX LTR_DIRS 9226 9540 144 + . . scaffold1576 WUBlastX LTR_DIRS 9535 9561 22 + . . scaffold1576 WUBlastX LTR_DIRS 9573 9833 69 + . . scaffold1576 WUBlastX LTR_DIRS 10838 11011 91 + . . scaffold1576 WUBlastX LTR_DIRS 11139 11318 90 + . . scaffold1576 WUBlastX LTR_DIRS? 11417 11494 45 + . . scaffold1576 WUBlastX LTR_DIRS 11476 11556 31 + . . scaffold1576 TRF Tandem_Repeat 20879 21211 232 + . . scaffold1576 GLEAN mRNA 36797 38389 0.836235 - . ID=CGI_10004468; scaffold1576 GLEAN promoter 38390 39389 0.836235 - . ID=CGI_10004468; scaffold1576 TRF Tandem_Repeat 47032 47062 53 + . . scaffold1576 WUBlastX LTR_Ngaro 53202 53771 41 + . . scaffold1576 WUBlastX LTR_DIRS? 53292 53816 186 + . . scaffold1576 WUBlastX LTR_DIRS? 53902 54126 134 + . . scaffold1576 WUBlastX LINE_CR1 54211 54255 20 + . . scaffold1576 WUBlastX LINE_RTE-X 54711 55181 142 + . . scaffold1576 WUBlastX LINE_RTE-X 54801 55187 158 + . . scaffold1576 WUBlastX LINE_RTE-X 54867 55193 225 + . . scaffold1576 WUBlastX LINE_L2 54942 55265 45 + . . scaffold1576 WUBlastX LINE_RTE-X 55205 55285 43 + . . scaffold1576 WUBlastX LINE_RTE-X 55297 56220 233 + . . scaffold1576 TRF Tandem_Repeat 60872 60946 141 + . . scaffold1576 GLEAN mRNA 70061 86867 0.644256 - . ID=CGI_10004469; scaffold1576 TRF Tandem_Repeat 85718 85769 86 + . . scaffold1576 TRF Tandem_Repeat 85718 85775 73 + . . scaffold1576 GLEAN promoter 86868 87867 0.644256 - . ID=CGI_10004469; scaffold1576 GLEAN promoter 93896 94895 1 + . ID=CGI_10004470; scaffold1576 WUBlastX LINE_CR1 94089 94760 196 + . . scaffold1576 GLEAN mRNA 94896 95300 1 + . ID=CGI_10004470; scaffold1576 WUBlastX LINE_L1-Tx1 95704 96765 241 + . . scaffold1577 GLEAN mRNA 11657 24356 0.998598 - . ID=CGI_10002923; scaffold1577 TRF Tandem_Repeat 11997 13003 1518 + . . scaffold1577 TRF Tandem_Repeat 24029 24101 146 + . . scaffold1577 GLEAN promoter 24357 25356 0.998598 - . ID=CGI_10002923; scaffold1577 TRF Tandem_Repeat 27672 27712 82 + . . scaffold1577 WUBlastX LINE_Penelope 31773 32225 65 + . . scaffold1577 WUBlastX LINE_Penelope 31866 32225 92 + . . scaffold1577 WUBlastX LINE_Penelope 31959 32240 128 + . . scaffold1577 WUBlastX LINE_CR1 35756 35812 26 + . . scaffold1577 WUBlastX LINE_CR1-L2 35774 35812 27 + . . scaffold1577 WUBlastX LINE_CR1 35820 35873 30 + . . scaffold1577 WUBlastX LINE_CR1 35972 36112 60 + . . scaffold1577 WUBlastX LINE_CR1-L2 36369 36515 21 + . . scaffold1577 TRF Tandem_Repeat 39473 39531 118 + . . scaffold1577 GLEAN promoter 39690 40689 0.8453 + . ID=CGI_10002924; scaffold1577 GLEAN mRNA 40690 48284 0.8453 + . ID=CGI_10002924; scaffold1577 GLEAN promoter 50338 51337 0.575468 + . ID=CGI_10002925; scaffold1577 TRF Tandem_Repeat 50771 50808 67 + . . scaffold1577 TRF Tandem_Repeat 50774 50816 52 + . . scaffold1577 GLEAN mRNA 51338 57126 0.575468 + . ID=CGI_10002925; scaffold1577 TRF Tandem_Repeat 53258 53309 104 + . . scaffold1578 GLEAN promoter 1147 2146 1 + . ID=CGI_10008159; scaffold1578 GLEAN mRNA 2147 2866 1 + . ID=CGI_10008159; scaffold1578 TRF Tandem_Repeat 5520 5544 50 + . . scaffold1578 TRF Tandem_Repeat 7943 8039 117 + . . scaffold1578 TRF Tandem_Repeat 8224 8257 50 + . . scaffold1578 TRF Tandem_Repeat 14256 14347 89 + . . scaffold1578 TRF Tandem_Repeat 14424 14583 169 + . . scaffold1578 TRF Tandem_Repeat 14813 14906 100 + . . scaffold1578 WUBlastX LTR_DIRS 34563 35552 820 - . . scaffold1578 WUBlastX LTR_DIRS 35585 35773 53 - . . scaffold1578 WUBlastX LTR_DIRS 35657 36340 235 - . . scaffold1578 WUBlastX LTR_DIRS 36366 37310 614 - . . scaffold1578 WUBlastX LTR_DIRS 37017 37598 268 - . . scaffold1578 TRF Tandem_Repeat 37891 38612 959 + . . scaffold1578 WUBlastX DNA_PiggyBac 40618 40812 33 - . . scaffold1578 WUBlastX DNA_PiggyBac 40796 41050 70 - . . scaffold1578 WUBlastX DNA_PiggyBac 40835 41122 57 - . . scaffold1578 WUBlastX DNA_PiggyBac 42505 43284 223 - . . scaffold1578 WUBlastX DNA_PiggyBac 43281 43469 22 - . . scaffold1578 GLEAN mRNA 44226 72498 0.998909 - . ID=CGI_10008160; scaffold1578 WUBlastX LTR_Ngaro 56008 56547 183 - . . scaffold1578 TRF Tandem_Repeat 62452 62522 117 + . . scaffold1578 WUBlastX LINE_L1-Tx1 63793 64236 91 - . . scaffold1578 WUBlastX LTR_Pao 65362 65520 23 + . . scaffold1578 WUBlastX LTR_Pao 65439 65573 21 + . . scaffold1578 WUBlastX LTR_Pao 65811 65909 34 + . . scaffold1578 WUBlastX LTR_Pao 65862 66473 116 + . . scaffold1578 WUBlastX LTR_Pao 66072 66479 328 + . . scaffold1578 WUBlastX LTR_Pao 66479 66550 47 + . . scaffold1578 WUBlastX LTR_Pao 66502 66636 56 + . . scaffold1578 WUBlastX LTR_Pao 66526 66654 74 + . . scaffold1578 WUBlastX LTR_Pao 66571 66681 21 + . . scaffold1578 WUBlastX LTR_Pao 66976 67035 26 + . . scaffold1578 WUBlastX LTR_Pao 67258 67575 114 + . . scaffold1578 WUBlastX LTR_Pao 67321 67578 220 + . . scaffold1578 WUBlastX LTR_Pao 68314 68400 25 + . . scaffold1578 GLEAN promoter 69792 70791 0.711447 + . ID=CGI_10008161; scaffold1578 GLEAN mRNA 70792 80456 0.711447 + . ID=CGI_10008161; scaffold1578 GLEAN promoter 72499 73498 0.998909 - . ID=CGI_10008160; scaffold1578 TRF Tandem_Repeat 73651 73729 158 + . . scaffold1578 GLEAN mRNA 98588 103876 0.999949 - . ID=CGI_10008162; scaffold1578 GLEAN promoter 103877 104876 0.999949 - . ID=CGI_10008162; scaffold1578 GLEAN promoter 106358 107357 0.618108 + . ID=CGI_10008163; scaffold1578 WUBlastX LINE_L2 107271 107519 78 + . . scaffold1578 GLEAN mRNA 107358 107540 0.618108 + . ID=CGI_10008163; scaffold1578 TRF Tandem_Repeat 109628 109724 194 + . . scaffold1578 TRF Tandem_Repeat 110385 110437 106 + . . scaffold1578 WUBlastX DNA_Harbinger 117698 117910 79 + . . scaffold1578 WUBlastX LTR_Gypsy 121225 122337 192 + . . scaffold1578 WUBlastX LTR_Gypsy 121510 124032 843 + . . scaffold1578 WUBlastX LTR_Gypsy 123899 125701 1177 + . . scaffold1578 WUBlastX LTR_Gypsy 125974 126066 22 + . . scaffold1578 GLEAN mRNA 129681 139173 0.171329 - . ID=CGI_10008164; scaffold1578 GLEAN promoter 139174 140173 0.171329 - . ID=CGI_10008164; scaffold1578 WUBlastX LINE_L2 157426 158520 473 - . . scaffold1578 WUBlastX LINE_L2 158440 158544 29 - . . scaffold1578 WUBlastX LINE_L2 159316 159654 85 - . . scaffold1578 WUBlastX LINE_L2 159403 159714 61 - . . scaffold1578 TRF Tandem_Repeat 161250 161436 329 + . . scaffold1578 GLEAN mRNA 166710 168766 0.677651 - . ID=CGI_10008165; scaffold1578 TRF Tandem_Repeat 168355 168387 66 + . . scaffold1578 GLEAN promoter 168767 169766 0.677651 - . ID=CGI_10008165; scaffold1578 TRF Tandem_Repeat 170027 170175 190 + . . scaffold1578 WUBlastX LINE_RTE-X 173334 173861 41 - . . scaffold1578 WUBlastX LINE_RTE-X 173367 173504 51 - . . scaffold1578 WUBlastX LINE_RTE-X 173370 173633 43 - . . scaffold1578 WUBlastX LINE_RTE-X 173812 174285 196 - . . scaffold1578 WUBlastX LINE_RTE-X 173824 174429 173 - . . scaffold1578 TRF Tandem_Repeat 177829 178188 287 + . . scaffold1578 TRF Tandem_Repeat 178968 179377 450 + . . scaffold1578 GLEAN promoter 178977 179976 0.997993 + . ID=CGI_10008166; scaffold1578 GLEAN promoter 179395 180394 0.999279 + . ID=CGI_10008167; scaffold1578 GLEAN mRNA 179977 180357 0.997993 + . ID=CGI_10008166; scaffold1578 GLEAN mRNA 180395 185270 0.999279 + . ID=CGI_10008167; scaffold1578 WUBlastX RC_Helitron 188026 188199 35 + . . scaffold1578 TRF Tandem_Repeat 191545 191574 60 + . . scaffold1578 TRF Tandem_Repeat 195628 196437 789 + . . scaffold1578 TRF Tandem_Repeat 197887 197948 81 + . . scaffold1579 GLEAN promoter 100 1099 0.5 + . ID=CGI_10016843; scaffold1579 GLEAN mRNA 1100 12565 0.5 + . ID=CGI_10016843; scaffold1579 GLEAN mRNA 1359 2416 1 - . ID=CGI_10016844; scaffold1579 GLEAN promoter 2417 3416 1 - . ID=CGI_10016844; scaffold1579 GLEAN mRNA 2855 10215 0.998191 - . ID=CGI_10016845; scaffold1579 TRF Tandem_Repeat 6700 6751 79 + . . scaffold1579 TRF Tandem_Repeat 9998 10023 52 + . . scaffold1579 GLEAN promoter 10216 11215 0.998191 - . ID=CGI_10016845; scaffold1579 TRF Tandem_Repeat 10895 10981 95 + . . scaffold1579 GLEAN mRNA 13103 16257 0.997064 - . ID=CGI_10016846; scaffold1579 GLEAN promoter 16258 17257 0.997064 - . ID=CGI_10016846; scaffold1579 GLEAN promoter 35498 36497 0.963272 + . ID=CGI_10016847; scaffold1579 GLEAN mRNA 36498 39893 0.963272 + . ID=CGI_10016847; scaffold1579 TRF Tandem_Repeat 38215 38632 483 + . . scaffold1579 GLEAN mRNA 40889 46018 0.96715 - . ID=CGI_10016848; scaffold1579 GLEAN promoter 45754 46753 1 + . ID=CGI_10016849; scaffold1579 GLEAN promoter 46019 47018 0.96715 - . ID=CGI_10016848; scaffold1579 GLEAN mRNA 46754 50308 1 + . ID=CGI_10016849; scaffold1579 TRF Tandem_Repeat 58589 58636 96 + . . scaffold1579 GLEAN mRNA 60125 61378 0.732724 - . ID=CGI_10016850; scaffold1579 GLEAN promoter 61379 62378 0.732724 - . ID=CGI_10016850; scaffold1579 TRF Tandem_Repeat 65325 65368 79 + . . scaffold1579 WUBlastX LINE_Penelope 81558 81584 22 + . . scaffold1579 WUBlastX LINE_Penelope 81790 82053 119 + . . scaffold1579 WUBlastX LINE_Penelope 82056 82304 128 + . . scaffold1579 WUBlastX LINE_Penelope 82307 83068 412 + . . scaffold1579 WUBlastX LINE_Penelope 82427 83278 66 + . . scaffold1579 TRF Tandem_Repeat 101574 102366 1137 + . . scaffold1579 WUBlastX LINE_L2 105460 105678 95 - . . scaffold1579 WUBlastX LINE_L2 105615 105932 121 - . . scaffold1579 WUBlastX LINE_L2 105672 106019 158 - . . scaffold1579 WUBlastX LINE_L2 105672 106088 129 - . . scaffold1579 WUBlastX LINE_L2 105705 106163 54 - . . scaffold1579 GLEAN promoter 109304 110303 0.998621 + . ID=CGI_10016852; scaffold1579 GLEAN mRNA 110304 111281 0.998621 + . ID=CGI_10016852; scaffold1579 WUBlastX LINE_RTE-BovB 118170 118484 65 - . . scaffold1579 WUBlastX LINE_RTE-BovB 118432 118587 54 - . . scaffold1579 GLEAN mRNA 125167 127568 0.94419 - . ID=CGI_10016853; scaffold1579 GLEAN promoter 127569 128568 0.94419 - . ID=CGI_10016853; scaffold1579 GLEAN mRNA 137517 138251 0.969297 - . ID=CGI_10016854; scaffold1579 GLEAN promoter 137713 138712 1 + . ID=CGI_10016855; scaffold1579 GLEAN promoter 138252 139251 0.969297 - . ID=CGI_10016854; scaffold1579 GLEAN mRNA 138713 143145 1 + . ID=CGI_10016855; scaffold1579 GLEAN mRNA 144482 145432 0.999375 - . ID=CGI_10016856; scaffold1579 GLEAN promoter 144720 145719 1 + . ID=CGI_10016857; scaffold1579 GLEAN promoter 145433 146432 0.999375 - . ID=CGI_10016856; scaffold1579 GLEAN mRNA 145720 150962 1 + . ID=CGI_10016857; scaffold1579 TRF Tandem_Repeat 147269 147372 181 + . . scaffold1579 GLEAN mRNA 153271 169105 1 - . ID=CGI_10016858; scaffold1579 GLEAN promoter 169106 170105 1 - . ID=CGI_10016858; scaffold1579 GLEAN mRNA 169269 177151 1 - . ID=CGI_10016859; scaffold1579 GLEAN promoter 176927 177926 0.999476 + . ID=CGI_10016860; scaffold1579 GLEAN promoter 177152 178151 1 - . ID=CGI_10016859; scaffold1579 GLEAN mRNA 177927 180535 0.999476 + . ID=CGI_10016860; scaffold1579 TRF Tandem_Repeat 181316 181393 149 + . . scaffold1579 GLEAN promoter 189590 190589 0.999676 + . ID=CGI_10016861; scaffold1579 GLEAN mRNA 190590 199075 0.999676 + . ID=CGI_10016861; scaffold1579 GLEAN mRNA 191295 213199 0.999913 - . ID=CGI_10016862; scaffold1579 TRF Tandem_Repeat 210035 210076 68 + . . scaffold1579 GLEAN promoter 213200 214199 0.999913 - . ID=CGI_10016862; scaffold1579 TRF Tandem_Repeat 213880 214004 89 + . . scaffold1579 TRF Tandem_Repeat 213880 214010 74 + . . scaffold1579 GLEAN mRNA 218963 230956 0.999965 - . ID=CGI_10016863; scaffold1579 GLEAN promoter 230957 231956 0.999965 - . ID=CGI_10016863; scaffold1579 GLEAN promoter 237529 238528 0.999212 + . ID=CGI_10016864; scaffold1579 GLEAN mRNA 238529 253555 0.999212 + . ID=CGI_10016864; scaffold1579 TRF Tandem_Repeat 240320 240610 354 + . . scaffold1579 TRF Tandem_Repeat 240991 241118 188 + . . scaffold1579 TRF Tandem_Repeat 240993 241150 176 + . . scaffold1579 TRF Tandem_Repeat 241188 241292 147 + . . scaffold1579 TRF Tandem_Repeat 243730 244856 1746 + . . scaffold1579 GLEAN mRNA 255385 256818 0.734544 - . ID=CGI_10016865; scaffold1579 GLEAN promoter 256471 257470 1 + . ID=CGI_10016866; scaffold1579 GLEAN promoter 256819 257818 0.734544 - . ID=CGI_10016865; scaffold1579 GLEAN mRNA 257471 264098 1 + . ID=CGI_10016866; scaffold1579 TRF Tandem_Repeat 265782 265963 197 + . . scaffold1579 TRF Tandem_Repeat 265838 266012 107 + . . scaffold1579 TRF Tandem_Repeat 277363 277418 112 + . . scaffold1579 WUBlastX DNA_TcMar-Pogo 278283 278384 25 - . . scaffold1579 WUBlastX DNA_TcMar-Pogo 278401 279180 247 - . . scaffold1579 WUBlastX DNA_TcMar-Tigge 279216 279284 49 - . . scaffold1579 GLEAN promoter 292629 293628 0.998987 + . ID=CGI_10016867; scaffold1579 GLEAN mRNA 293629 306324 0.998987 + . ID=CGI_10016867; scaffold1579 TRF Tandem_Repeat 307925 307956 64 + . . scaffold1579 TRF Tandem_Repeat 313526 313595 140 + . . scaffold1579 GLEAN promoter 316346 317345 1 + . ID=CGI_10016868; scaffold1579 GLEAN mRNA 317346 318165 1 + . ID=CGI_10016868; scaffold1579 WUBlastX LINE_CR1 317939 318343 58 - . . scaffold1579 GLEAN promoter 319598 320597 0.999956 + . ID=CGI_10016869; scaffold1579 GLEAN mRNA 320598 331843 0.999956 + . ID=CGI_10016869; scaffold1579 WUBlastX LINE_L1 324997 325464 39 + . . scaffold1579 WUBlastX LINE_RTE-X 325090 325425 63 + . . scaffold1579 WUBlastX LINE_RTE-X 325428 327092 698 + . . scaffold1579 WUBlastX LINE_RTE-X 326463 327233 180 + . . scaffold1579 GLEAN promoter 331901 332900 0.998724 + . ID=CGI_10016870; scaffold1579 TRF Tandem_Repeat 332501 332579 158 + . . scaffold1579 GLEAN mRNA 332901 342919 0.998724 + . ID=CGI_10016870; scaffold1579 GLEAN mRNA 347248 358452 0.999997 - . ID=CGI_10016871; scaffold1579 TRF Tandem_Repeat 352715 352742 56 + . . scaffold1579 GLEAN promoter 353403 354402 0.857989 + . ID=CGI_10016872; scaffold1579 GLEAN mRNA 354403 366872 0.857989 + . ID=CGI_10016872; scaffold1579 GLEAN promoter 358453 359452 0.999997 - . ID=CGI_10016871; scaffold1579 TRF Tandem_Repeat 360056 360724 707 + . . scaffold1579 TRF Tandem_Repeat 362000 362030 62 + . . scaffold1579 GLEAN promoter 366653 367652 0.999938 + . ID=CGI_10016873; scaffold1579 GLEAN mRNA 367653 387162 0.999938 + . ID=CGI_10016873; scaffold1579 TRF Tandem_Repeat 379563 379611 91 + . . scaffold1579 TRF Tandem_Repeat 380355 380962 497 + . . scaffold1579 TRF Tandem_Repeat 380355 380962 450 + . . scaffold1579 TRF Tandem_Repeat 380677 380827 206 + . . scaffold1579 GLEAN mRNA 390587 392213 0.999415 - . ID=CGI_10016874; scaffold1579 GLEAN promoter 392214 393213 0.999415 - . ID=CGI_10016874; scaffold1579 TRF Tandem_Repeat 392656 392722 125 + . . scaffold1579 GLEAN promoter 396131 397130 0.732699 + . ID=CGI_10016875; scaffold1579 GLEAN mRNA 397131 401231 0.732699 + . ID=CGI_10016875; scaffold1579 GLEAN promoter 400721 401720 0.790768 + . ID=CGI_10016876; scaffold1579 TRF Tandem_Repeat 401272 401371 155 + . . scaffold1579 GLEAN mRNA 401721 411103 0.790768 + . ID=CGI_10016876; scaffold1579 TRF Tandem_Repeat 404355 404409 110 + . . scaffold1579 TRF Tandem_Repeat 404436 404471 72 + . . scaffold1579 TRF Tandem_Repeat 411643 412066 283 + . . scaffold1579 TRF Tandem_Repeat 411749 411985 170 + . . scaffold1579 TRF Tandem_Repeat 413630 413663 68 + . . scaffold1579 GLEAN promoter 418049 419048 0.687518 + . ID=CGI_10016877; scaffold1579 GLEAN mRNA 419049 441911 0.687518 + . ID=CGI_10016877; scaffold1579 TRF Tandem_Repeat 423435 423495 104 + . . scaffold1579 TRF Tandem_Repeat 436657 436701 90 + . . scaffold1579 TRF Tandem_Repeat 441322 441365 88 + . . scaffold1579 GLEAN promoter 441813 442812 1 + . ID=CGI_10016878; scaffold1579 GLEAN mRNA 442813 449504 1 + . ID=CGI_10016878; scaffold1579 GLEAN promoter 458057 459056 0.998897 + . ID=CGI_10016879; scaffold1579 GLEAN mRNA 459057 473086 0.998897 + . ID=CGI_10016879; scaffold1579 GLEAN promoter 472292 473291 0.999415 + . ID=CGI_10016880; scaffold1579 GLEAN mRNA 473292 477285 0.999415 + . ID=CGI_10016880; scaffold1579 TRF Tandem_Repeat 476645 476919 370 + . . scaffold1579 GLEAN promoter 477555 478554 1 + . ID=CGI_10016881; scaffold1579 GLEAN mRNA 478555 480411 1 + . ID=CGI_10016881; scaffold1579 TRF Tandem_Repeat 478663 478717 110 + . . scaffold1579 TRF Tandem_Repeat 481288 481985 783 + . . scaffold1580 TRF Tandem_Repeat 16880 16933 81 + . . scaffold1580 WUBlastX LINE_Penelope 17615 17740 32 + . . scaffold1580 WUBlastX LINE_Penelope 17899 18084 36 + . . scaffold1580 TRF Tandem_Repeat 30074 30251 62 + . . scaffold1581 WUBlastX LINE_L1-Tx1 410 517 29 - . . scaffold1581 WUBlastX LINE_L1-Tx1 879 968 50 - . . scaffold1581 WUBlastX LINE_L1-Tx1 958 1191 39 - . . scaffold1581 WUBlastX LINE_L1 1030 1494 46 - . . scaffold1581 WUBlastX LINE_L1 1414 1497 59 - . . scaffold1581 WUBlastX LINE_L1 1464 1649 63 - . . scaffold1581 WUBlastX LINE_L1-Tx1 1518 1691 76 - . . scaffold1581 WUBlastX LINE_L1-Tx1 1691 2206 84 - . . scaffold1581 TRF Tandem_Repeat 2649 2676 56 + . . scaffold1581 WUBlastX LINE_L1-Tx1 12168 14249 1161 + . . scaffold1581 WUBlastX LINE_L1 14195 14494 73 + . . scaffold1581 WUBlastX LINE_L1-Tx1 14195 14434 149 + . . scaffold1581 WUBlastX LINE_L2 14213 14548 24 + . . scaffold1581 WUBlastX LINE_L1-Tx1 14551 15027 92 + . . scaffold1581 WUBlastX LINE_L1-Tx1 14692 15033 105 + . . scaffold1581 WUBlastX LINE_L1 14734 15117 43 + . . scaffold1581 WUBlastX LINE_CR1 15120 15212 20 + . . scaffold1581 WUBlastX LINE_R2 15135 15242 22 + . . scaffold1581 GLEAN promoter 15229 16228 0.999661 + . ID=CGI_10005309; scaffold1581 GLEAN mRNA 16229 17959 0.999661 + . ID=CGI_10005309; scaffold1581 WUBlastX LINE_L2 16436 17203 21 + . . scaffold1581 GLEAN mRNA 19755 24679 0.641528 - . ID=CGI_10005310; scaffold1581 GLEAN promoter 24680 25679 0.641528 - . ID=CGI_10005310; scaffold1581 WUBlastX DNA_IS4EU 27429 27731 115 + . . scaffold1581 WUBlastX DNA_Kolobok-IS4 27573 28919 468 + . . scaffold1581 WUBlastX DNA_IS4EU 27906 28919 732 + . . scaffold1581 WUBlastX DNA_IS4EU 30814 31575 109 - . . scaffold1581 WUBlastX DNA_IS4EU 31078 31560 158 - . . scaffold1581 TRF Tandem_Repeat 33717 33773 114 + . . scaffold1581 WUBlastX DNA_IS4EU 47785 48318 100 + . . scaffold1581 WUBlastX DNA_IS4EU 48262 48516 33 + . . scaffold1581 WUBlastX DNA_IS4EU 48371 49276 641 + . . scaffold1581 GLEAN promoter 51858 52857 0.999605 + . ID=CGI_10005311; scaffold1581 GLEAN mRNA 52858 61261 0.999605 + . ID=CGI_10005311; scaffold1581 TRF Tandem_Repeat 57718 57759 77 + . . scaffold1581 TRF Tandem_Repeat 58598 58713 133 + . . scaffold1581 TRF Tandem_Repeat 58622 58686 62 + . . scaffold1581 GLEAN promoter 67978 68977 1 + . ID=CGI_10005312; scaffold1581 GLEAN mRNA 68978 81686 1 + . ID=CGI_10005312; scaffold1581 TRF Tandem_Repeat 72693 72730 67 + . . scaffold1581 TRF Tandem_Repeat 72850 73589 958 + . . scaffold1581 TRF Tandem_Repeat 77501 78355 1032 + . . scaffold1581 TRF Tandem_Repeat 84604 84628 50 + . . scaffold1581 GLEAN promoter 86967 87966 0.999064 + . ID=CGI_10005313; scaffold1581 GLEAN mRNA 87967 89628 0.999064 + . ID=CGI_10005313; scaffold1581 WUBlastX LINE_L2 88093 88557 39 + . . scaffold1581 TRF Tandem_Repeat 91160 91225 50 + . . scaffold1581 GLEAN mRNA 95773 105131 0.937847 - . ID=CGI_10005314; scaffold1581 GLEAN promoter 103527 104526 0.998784 + . ID=CGI_10005315; scaffold1581 TRF Tandem_Repeat 103916 103960 90 + . . scaffold1581 GLEAN mRNA 104527 113749 0.998784 + . ID=CGI_10005315; scaffold1581 GLEAN promoter 105132 106131 0.937847 - . ID=CGI_10005314; scaffold1582 GLEAN mRNA 5589 5897 0.999372 - . ID=CGI_10000482; scaffold1582 GLEAN promoter 5898 5985 0.999372 - . ID=CGI_10000482; scaffold1583 GLEAN mRNA 1306 45381 0.647663 - . ID=CGI_10025805; scaffold1583 TRF Tandem_Repeat 1647 1714 104 + . . scaffold1583 TRF Tandem_Repeat 28218 28313 76 + . . scaffold1583 TRF Tandem_Repeat 30670 30702 57 + . . scaffold1583 TRF Tandem_Repeat 31398 31552 67 + . . scaffold1583 TRF Tandem_Repeat 31462 31608 73 + . . scaffold1583 TRF Tandem_Repeat 40104 40167 56 + . . scaffold1583 TRF Tandem_Repeat 40112 40168 69 + . . scaffold1583 TRF Tandem_Repeat 40128 40159 55 + . . scaffold1583 GLEAN promoter 44990 45989 0.652119 + . ID=CGI_10025806; scaffold1583 GLEAN promoter 45382 46381 0.647663 - . ID=CGI_10025805; scaffold1583 GLEAN mRNA 45990 74832 0.652119 + . ID=CGI_10025806; scaffold1583 TRF Tandem_Repeat 57183 57317 56 + . . scaffold1583 TRF Tandem_Repeat 65602 66024 490 + . . scaffold1583 TRF Tandem_Repeat 65608 66023 427 + . . scaffold1583 TRF Tandem_Repeat 67210 67297 97 + . . scaffold1583 TRF Tandem_Repeat 67299 67424 70 + . . scaffold1583 TRF Tandem_Repeat 67316 67536 158 + . . scaffold1583 GLEAN promoter 77625 78624 0.997499 + . ID=CGI_10025807; scaffold1583 GLEAN mRNA 78625 84636 0.997499 + . ID=CGI_10025807; scaffold1583 GLEAN mRNA 85740 92618 1 - . ID=CGI_10025808; scaffold1583 GLEAN promoter 92619 93618 1 - . ID=CGI_10025808; scaffold1583 WUBlastX LINE_RTE-X 97520 98197 55 + . . scaffold1583 WUBlastX LINE_RTE-X 97640 98215 60 + . . scaffold1583 WUBlastX LINE_RTE-X 97802 98188 73 + . . scaffold1583 GLEAN mRNA 101315 116076 0.999375 - . ID=CGI_10025809; scaffold1583 TRF Tandem_Repeat 114618 114656 78 + . . scaffold1583 GLEAN promoter 116077 117076 0.999375 - . ID=CGI_10025809; scaffold1583 GLEAN mRNA 119311 124474 0.99849 - . ID=CGI_10025810; scaffold1583 GLEAN promoter 124475 125474 0.99849 - . ID=CGI_10025810; scaffold1583 GLEAN mRNA 126967 128830 1 - . ID=CGI_10025811; scaffold1583 GLEAN promoter 128831 129830 1 - . ID=CGI_10025811; scaffold1583 GLEAN mRNA 129483 139733 1 - . ID=CGI_10025812; scaffold1583 TRF Tandem_Repeat 136504 136743 191 + . . scaffold1583 TRF Tandem_Repeat 137571 137656 70 + . . scaffold1583 TRF Tandem_Repeat 137878 137920 86 + . . scaffold1583 TRF Tandem_Repeat 138251 138300 82 + . . scaffold1583 GLEAN promoter 139734 140733 1 - . ID=CGI_10025812; scaffold1583 TRF Tandem_Repeat 141082 141330 372 + . . scaffold1583 GLEAN mRNA 143861 148507 0.836238 - . ID=CGI_10025813; scaffold1583 GLEAN promoter 148508 149507 0.836238 - . ID=CGI_10025813; scaffold1583 TRF Tandem_Repeat 151716 151765 86 + . . scaffold1583 GLEAN promoter 162766 163765 1 + . ID=CGI_10025814; scaffold1583 GLEAN mRNA 163766 167569 1 + . ID=CGI_10025814; scaffold1583 GLEAN promoter 171691 172690 0.999949 + . ID=CGI_10025815; scaffold1583 GLEAN mRNA 172691 185420 0.999949 + . ID=CGI_10025815; scaffold1583 TRF Tandem_Repeat 181700 181934 229 + . . scaffold1583 GLEAN mRNA 188931 190044 1 - . ID=CGI_10025816; scaffold1583 GLEAN promoter 190045 191044 1 - . ID=CGI_10025816; scaffold1583 WUBlastX LINE_RTE-X 195201 195236 23 + . . scaffold1583 WUBlastX LINE_RTE-X 195552 195650 20 + . . scaffold1583 WUBlastX LINE_RTE-X 195647 195760 38 + . . scaffold1583 WUBlastX LINE_RTE-X 195841 196032 44 + . . scaffold1583 GLEAN promoter 196262 197261 0.998725 + . ID=CGI_10025817; scaffold1583 GLEAN mRNA 197262 202600 0.998725 + . ID=CGI_10025817; scaffold1583 TRF Tandem_Repeat 200096 200144 98 + . . scaffold1583 TRF Tandem_Repeat 200632 200965 297 + . . scaffold1583 GLEAN promoter 226324 227323 0.559884 + . ID=CGI_10025818; scaffold1583 GLEAN mRNA 227324 237330 0.559884 + . ID=CGI_10025818; scaffold1583 GLEAN promoter 239980 240979 0.977442 + . ID=CGI_10025819; scaffold1583 GLEAN mRNA 240980 255343 0.977442 + . ID=CGI_10025819; scaffold1583 GLEAN mRNA 263251 263925 0.777732 - . ID=CGI_10025820; scaffold1583 GLEAN promoter 263926 264925 0.777732 - . ID=CGI_10025820; scaffold1583 GLEAN mRNA 264264 269564 0.999572 - . ID=CGI_10025821; scaffold1583 GLEAN promoter 269565 270564 0.999572 - . ID=CGI_10025821; scaffold1583 WUBlastX LINE_L2 280435 281667 522 - . . scaffold1583 WUBlastX LINE_I 281113 281865 54 - . . scaffold1583 WUBlastX LINE_RTE-X 282821 283300 38 - . . scaffold1583 WUBlastX LINE_RTE-X 282827 283228 92 - . . scaffold1583 TRF Tandem_Repeat 285616 285653 67 + . . scaffold1583 TRF Tandem_Repeat 293070 293119 50 + . . scaffold1583 GLEAN mRNA 295937 299922 1 - . ID=CGI_10025822; scaffold1583 GLEAN promoter 299923 300922 1 - . ID=CGI_10025822; scaffold1583 GLEAN mRNA 302473 325169 0.82008 - . ID=CGI_10025823; scaffold1583 TRF Tandem_Repeat 304774 304838 130 + . . scaffold1583 TRF Tandem_Repeat 304901 304931 62 + . . scaffold1583 WUBlastX LINE_RTE-X 323387 323725 62 - . . scaffold1583 WUBlastX LINE_RTE-X 323471 323725 84 - . . scaffold1583 WUBlastX LINE_RTE-X 323785 324345 144 - . . scaffold1583 WUBlastX LINE_RTE-X 323902 324345 154 - . . scaffold1583 WUBlastX LINE_RTE-X 324351 324659 138 - . . scaffold1583 WUBlastX LINE_Proto2 324408 324704 42 - . . scaffold1583 GLEAN promoter 325170 326169 0.82008 - . ID=CGI_10025823; scaffold1583 TRF Tandem_Repeat 325337 325420 69 + . . scaffold1583 TRF Tandem_Repeat 326451 326526 89 + . . scaffold1583 TRF Tandem_Repeat 327749 327807 100 + . . scaffold1583 GLEAN mRNA 328363 329220 1 - . ID=CGI_10025824; scaffold1583 GLEAN promoter 329221 330220 1 - . ID=CGI_10025824; scaffold1583 GLEAN mRNA 329253 340870 0.998703 - . ID=CGI_10025825; scaffold1583 WUBlastX LINE_RTE-X 330184 330501 126 + . . scaffold1583 WUBlastX LINE_RTE-X 330196 330585 99 + . . scaffold1583 WUBlastX LINE_RTE-X 330557 330670 50 + . . scaffold1583 WUBlastX LINE_RTE-X 330696 331175 86 + . . scaffold1583 GLEAN promoter 331118 332117 0.999676 + . ID=CGI_10025826; scaffold1583 GLEAN mRNA 332118 341866 0.999676 + . ID=CGI_10025826; scaffold1583 GLEAN promoter 340871 341870 0.998703 - . ID=CGI_10025825; scaffold1583 GLEAN mRNA 344678 376529 0.997998 - . ID=CGI_10025827; scaffold1583 GLEAN promoter 369305 370304 0.999981 + . ID=CGI_10025828; scaffold1583 GLEAN mRNA 370305 397955 0.999981 + . ID=CGI_10025828; scaffold1583 GLEAN promoter 376530 377529 0.997998 - . ID=CGI_10025827; scaffold1583 TRF Tandem_Repeat 381309 381352 88 + . . scaffold1583 TRF Tandem_Repeat 390301 390341 82 + . . scaffold1583 TRF Tandem_Repeat 390435 390462 56 + . . scaffold1583 GLEAN mRNA 407638 421039 1 - . ID=CGI_10025830; scaffold1583 GLEAN promoter 421040 422039 1 - . ID=CGI_10025830; scaffold1583 WUBlastX DNA_TcMar-Marin 422425 422643 25 - . . scaffold1583 WUBlastX DNA_TcMar-Marin 422475 422729 50 - . . scaffold1583 WUBlastX DNA_TcMar-Marin 422535 422729 59 - . . scaffold1583 TRF Tandem_Repeat 422803 422927 62 + . . scaffold1583 TRF Tandem_Repeat 422803 422913 50 + . . scaffold1583 TRF Tandem_Repeat 423642 423758 69 + . . scaffold1583 TRF Tandem_Repeat 423657 423723 61 + . . scaffold1583 WUBlastX DNA_TcMar-Marin 423773 424264 64 - . . scaffold1583 WUBlastX DNA_TcMar-Marin 424273 424551 69 - . . scaffold1583 WUBlastX DNA_TcMar-Marin 424318 424497 79 - . . scaffold1583 TRF Tandem_Repeat 426804 426873 140 + . . scaffold1583 TRF Tandem_Repeat 427123 427177 110 + . . scaffold1583 TRF Tandem_Repeat 459691 459873 102 + . . scaffold1583 WUBlastX LINE_Penelope 488545 489135 58 + . . scaffold1583 TRF Tandem_Repeat 492267 493094 1151 + . . scaffold1583 WUBlastX LINE_RTE-BovB 507611 507688 20 - . . scaffold1583 WUBlastX LINE_RTE-BovB 507792 507932 58 - . . scaffold1583 WUBlastX LINE_RTE-BovB 507840 508130 79 - . . scaffold1583 WUBlastX LINE_RTE-BovB 507912 508127 84 - . . scaffold1583 WUBlastX LINE_RTE-BovB 507963 508157 82 - . . scaffold1583 WUBlastX LINE_RTE-BovB 508289 508588 49 - . . scaffold1583 WUBlastX LINE_RTE-BovB 508346 508576 68 - . . scaffold1583 GLEAN promoter 511309 512308 0.999996 + . ID=CGI_10025831; scaffold1583 GLEAN mRNA 512309 518134 0.999996 + . ID=CGI_10025831; scaffold1583 TRF Tandem_Repeat 524240 524296 107 + . . scaffold1583 TRF Tandem_Repeat 526960 527008 98 + . . scaffold1583 TRF Tandem_Repeat 530502 530540 78 + . . scaffold1583 TRF Tandem_Repeat 533388 533419 64 + . . scaffold1583 TRF Tandem_Repeat 536295 536368 94 + . . scaffold1583 TRF Tandem_Repeat 536305 536365 81 + . . scaffold1583 TRF Tandem_Repeat 536313 536368 94 + . . scaffold1583 WUBlastX LTR_Copia 538587 539231 38 + . . scaffold1583 WUBlastX LTR_DIRS 538914 539948 119 + . . scaffold1583 WUBlastX LTR_DIRS 539268 539966 200 + . . scaffold1583 WUBlastX LTR_DIRS 539993 541126 700 + . . scaffold1583 WUBlastX LTR_DIRS 541156 541857 412 + . . scaffold1583 WUBlastX LTR_DIRS 541156 542409 346 + . . scaffold1583 WUBlastX LTR_DIRS 542403 542828 120 + . . scaffold1583 TRF Tandem_Repeat 546508 546537 60 + . . scaffold1583 TRF Tandem_Repeat 546943 547814 1100 + . . scaffold1583 GLEAN promoter 549850 550849 0.993179 + . ID=CGI_10025832; scaffold1583 GLEAN mRNA 550850 570750 0.993179 + . ID=CGI_10025832; scaffold1583 TRF Tandem_Repeat 570867 571130 370 + . . scaffold1583 GLEAN promoter 572941 573940 0.444858 + . ID=CGI_10025833; scaffold1583 GLEAN mRNA 573941 574321 0.444858 + . ID=CGI_10025833; scaffold1583 WUBlastX LINE_L2 603051 603278 75 + . . scaffold1583 WUBlastX LINE_L2 603087 603290 78 + . . scaffold1583 WUBlastX LINE_L2 603161 603517 104 + . . scaffold1583 WUBlastX LINE_L2 603287 603517 105 + . . scaffold1583 WUBlastX LINE_L2 603603 603722 30 + . . scaffold1583 TRF Tandem_Repeat 604711 604759 98 + . . scaffold1583 GLEAN mRNA 604844 607465 0.51807 - . ID=CGI_10025834; scaffold1583 TRF Tandem_Repeat 604916 605824 717 + . . scaffold1583 GLEAN promoter 607466 608465 0.51807 - . ID=CGI_10025834; scaffold1583 WUBlastX LINE_L2 610369 611400 563 - . . scaffold1583 WUBlastX LINE_CR1-L2 611378 612958 403 - . . scaffold1583 WUBlastX LINE_L2 611447 612757 613 - . . scaffold1583 WUBlastX LINE_L2 613759 614310 223 - . . scaffold1583 WUBlastX LINE_L2 613774 614577 163 - . . scaffold1583 WUBlastX LINE_L2 613792 614427 173 - . . scaffold1583 GLEAN mRNA 619298 631603 0.999866 - . ID=CGI_10025835; scaffold1583 TRF Tandem_Repeat 622306 622363 102 + . . scaffold1583 TRF Tandem_Repeat 623511 623679 248 + . . scaffold1583 TRF Tandem_Repeat 624431 624584 254 + . . scaffold1583 TRF Tandem_Repeat 624673 624726 54 + . . scaffold1583 TRF Tandem_Repeat 626470 626919 408 + . . scaffold1583 TRF Tandem_Repeat 626874 626933 59 + . . scaffold1583 GLEAN promoter 631604 632603 0.999866 - . ID=CGI_10025835; scaffold1583 GLEAN promoter 636095 637094 0.999995 + . ID=CGI_10025836; scaffold1583 GLEAN mRNA 637095 660562 0.999995 + . ID=CGI_10025836; scaffold1583 TRF Tandem_Repeat 640267 641200 1595 + . . scaffold1583 TRF Tandem_Repeat 642336 642485 221 + . . scaffold1583 TRF Tandem_Repeat 643806 643831 52 + . . scaffold1583 TRF Tandem_Repeat 651410 651681 332 + . . scaffold1583 TRF Tandem_Repeat 652818 653059 413 + . . scaffold1583 TRF Tandem_Repeat 657719 657806 114 + . . scaffold1583 TRF Tandem_Repeat 659453 659540 114 + . . scaffold1583 WUBlastX LTR_Gypsy 676029 677381 1035 + . . scaffold1583 WUBlastX LTR_DIRS 677340 677402 27 + . . scaffold1583 WUBlastX LTR_Gypsy 678871 678903 22 + . . scaffold1583 TRF Tandem_Repeat 685410 686905 955 + . . scaffold1583 TRF Tandem_Repeat 685879 686376 453 + . . scaffold1583 TRF Tandem_Repeat 685996 686244 102 + . . scaffold1583 TRF Tandem_Repeat 686015 686968 406 + . . scaffold1583 TRF Tandem_Repeat 686355 686827 407 + . . scaffold1583 TRF Tandem_Repeat 686383 686481 92 + . . scaffold1583 TRF Tandem_Repeat 686838 686949 161 + . . scaffold1583 GLEAN mRNA 687521 699761 1 - . ID=CGI_10025837; scaffold1583 TRF Tandem_Repeat 690851 691258 534 + . . scaffold1583 TRF Tandem_Repeat 691255 691548 473 + . . scaffold1583 TRF Tandem_Repeat 691860 692283 508 + . . scaffold1583 TRF Tandem_Repeat 694120 694689 732 + . . scaffold1583 TRF Tandem_Repeat 699074 699117 88 + . . scaffold1583 GLEAN promoter 699762 700761 1 - . ID=CGI_10025837; scaffold1583 TRF Tandem_Repeat 700623 700692 106 + . . scaffold1583 GLEAN promoter 700832 701831 1 + . ID=CGI_10025838; scaffold1583 GLEAN mRNA 701832 712815 1 + . ID=CGI_10025838; scaffold1583 TRF Tandem_Repeat 702091 702144 108 + . . scaffold1583 TRF Tandem_Repeat 704215 704308 89 + . . scaffold1583 TRF Tandem_Repeat 705090 705210 127 + . . scaffold1583 TRF Tandem_Repeat 705265 705403 127 + . . scaffold1583 TRF Tandem_Repeat 705480 705571 96 + . . scaffold1583 TRF Tandem_Repeat 707771 707826 103 + . . scaffold1583 TRF Tandem_Repeat 708291 708329 78 + . . scaffold1583 GLEAN mRNA 714158 724330 0.999675 - . ID=CGI_10025839; scaffold1583 TRF Tandem_Repeat 716368 716477 193 + . . scaffold1583 TRF Tandem_Repeat 718775 718825 102 + . . scaffold1583 TRF Tandem_Repeat 722696 722735 80 + . . scaffold1583 GLEAN promoter 724331 725330 0.999675 - . ID=CGI_10025839; scaffold1583 WUBlastX LINE_L2 729197 729304 54 + . . scaffold1583 WUBlastX LINE_L2 729301 729441 70 + . . scaffold1583 WUBlastX LINE_CR1-L2 729334 729504 61 + . . scaffold1583 WUBlastX LINE_CR1-L2 729793 729849 38 + . . scaffold1583 WUBlastX LINE_CR1-L2 729793 729870 22 + . . scaffold1583 WUBlastX DNA_Maverick 755753 756862 593 - . . scaffold1583 GLEAN mRNA 756798 766988 0.512265 - . ID=CGI_10025840; scaffold1583 WUBlastX LTR_Gypsy 756984 757121 26 - . . scaffold1583 WUBlastX DNA_Maverick 757569 758177 406 - . . scaffold1583 TRF Tandem_Repeat 758279 758312 59 + . . scaffold1583 WUBlastX DNA_Maverick 759061 759990 266 - . . scaffold1583 WUBlastX DNA_Maverick 759064 759594 289 - . . scaffold1583 WUBlastX DNA_Maverick 760038 760841 299 - . . scaffold1583 TRF Tandem_Repeat 764151 764196 92 + . . scaffold1583 GLEAN promoter 766467 767466 0.731718 + . ID=CGI_10025841; scaffold1583 GLEAN promoter 766989 767988 0.512265 - . ID=CGI_10025840; scaffold1583 GLEAN mRNA 767467 767988 0.731718 + . ID=CGI_10025841; scaffold1583 TRF Tandem_Repeat 768251 768276 52 + . . scaffold1583 TRF Tandem_Repeat 769242 769863 643 + . . scaffold1583 WUBlastX LINE_L1 772886 773266 44 - . . scaffold1583 WUBlastX LINE_L1-Tx1 772949 773299 69 - . . scaffold1583 WUBlastX RC_Helitron 774144 775808 842 - . . scaffold1583 TRF Tandem_Repeat 794525 794580 112 + . . scaffold1583 TRF Tandem_Repeat 798769 798867 189 + . . scaffold1583 WUBlastX LINE_Penelope 804582 804887 60 + . . scaffold1583 WUBlastX LTR_Gypsy-Cigr 821676 822080 76 - . . scaffold1583 WUBlastX LTR_Gypsy-Cigr 821745 822182 66 - . . scaffold1583 WUBlastX LTR_Gypsy 821745 822047 79 - . . scaffold1583 WUBlastX LTR_Gypsy 821745 822347 64 - . . scaffold1583 WUBlastX LTR_Gypsy 821799 822452 41 - . . scaffold1583 WUBlastX LTR_Gypsy 821820 822686 38 - . . scaffold1583 GLEAN mRNA 822207 822614 0.999365 - . ID=CGI_10025843; scaffold1583 GLEAN promoter 822615 823614 0.999365 - . ID=CGI_10025843; scaffold1583 GLEAN mRNA 822649 823883 0.593542 - . ID=CGI_10025844; scaffold1583 GLEAN promoter 823884 824883 0.593542 - . ID=CGI_10025844; scaffold1583 GLEAN promoter 825543 826542 0.69082 + . ID=CGI_10025845; scaffold1583 GLEAN mRNA 826543 827773 0.69082 + . ID=CGI_10025845; scaffold1583 WUBlastX LTR_Gypsy 830367 830735 20 - . . scaffold1583 WUBlastX LTR_Gypsy 830493 834440 2682 - . . scaffold1583 WUBlastX DNA_TcMar-Tc1 836695 837180 219 - . . scaffold1583 WUBlastX DNA_TcMar-Tc1 837162 837512 80 - . . scaffold1583 GLEAN mRNA 847774 849351 1 - . ID=CGI_10025846; scaffold1583 GLEAN promoter 849352 850351 1 - . ID=CGI_10025846; scaffold1583 TRF Tandem_Repeat 850673 850787 151 + . . scaffold1583 TRF Tandem_Repeat 850961 851069 101 + . . scaffold1583 TRF Tandem_Repeat 854005 854039 70 + . . scaffold1583 GLEAN mRNA 854501 869319 0.857655 - . ID=CGI_10025847; scaffold1583 TRF Tandem_Repeat 857862 858272 130 + . . scaffold1583 GLEAN promoter 869320 870319 0.857655 - . ID=CGI_10025847; scaffold1583 GLEAN mRNA 870364 871773 1 - . ID=CGI_10025848; scaffold1583 GLEAN promoter 871774 872773 1 - . ID=CGI_10025848; scaffold1583 TRF Tandem_Repeat 871926 871991 114 + . . scaffold1583 GLEAN promoter 873807 874806 1 + . ID=CGI_10025849; scaffold1583 GLEAN mRNA 874807 875781 1 + . ID=CGI_10025849; scaffold1583 GLEAN mRNA 878075 888347 0.841405 - . ID=CGI_10025850; scaffold1583 GLEAN promoter 888348 889347 0.841405 - . ID=CGI_10025850; scaffold1583 GLEAN mRNA 888386 888742 0.937773 - . ID=CGI_10025851; scaffold1583 GLEAN promoter 888743 889742 0.937773 - . ID=CGI_10025851; scaffold1583 WUBlastX LINE_L2 892355 892762 102 + . . scaffold1583 WUBlastX LTR_Pao 897139 897372 163 - . . scaffold1583 WUBlastX LTR_Pao 897205 897420 74 - . . scaffold1583 GLEAN promoter 898221 899220 1 + . ID=CGI_10025852; scaffold1583 GLEAN mRNA 899221 905675 1 + . ID=CGI_10025852; scaffold1583 GLEAN mRNA 906885 909966 1 - . ID=CGI_10025853; scaffold1583 TRF Tandem_Repeat 908525 908578 92 + . . scaffold1583 GLEAN promoter 909967 910966 1 - . ID=CGI_10025853; scaffold1583 TRF Tandem_Repeat 912666 912699 50 + . . scaffold1583 WUBlastX LINE_RTE-X 916819 918105 204 + . . scaffold1583 WUBlastX LINE_RTE-X 917092 918084 279 + . . scaffold1583 WUBlastX LINE_RTE-X 917239 918051 328 + . . scaffold1583 WUBlastX LINE_RTE-X 917242 918240 257 + . . scaffold1583 WUBlastX LINE_RTE-X 918494 918808 40 + . . scaffold1583 WUBlastX LINE_RTE-X 918554 918802 50 + . . scaffold1583 WUBlastX LINE_RTE-X 918626 918802 74 + . . scaffold1583 WUBlastX LINE_RTE-X 918816 919115 32 + . . scaffold1583 WUBlastX LINE_RTE-X 919292 919456 21 + . . scaffold1583 WUBlastX LINE_RTE-X 919310 919432 25 + . . scaffold1583 WUBlastX LINE_RTE-X 919331 919426 28 + . . scaffold1583 TRF Tandem_Repeat 926431 926475 90 + . . scaffold1583 WUBlastX DNA_TcMar-Tc1 928394 928975 163 + . . scaffold1583 WUBlastX DNA_TcMar-Tc1 928912 929373 274 + . . scaffold1583 TRF Tandem_Repeat 933676 933757 137 + . . scaffold1583 TRF Tandem_Repeat 934009 934065 107 + . . scaffold1583 TRF Tandem_Repeat 936009 936080 51 + . . scaffold1583 GLEAN promoter 943207 944206 1 + . ID=CGI_10025854; scaffold1583 GLEAN mRNA 944207 946039 1 + . ID=CGI_10025854; scaffold1583 GLEAN mRNA 950026 952773 1 - . ID=CGI_10025856; scaffold1583 GLEAN promoter 952169 953168 0.999949 + . ID=CGI_10025857; scaffold1583 GLEAN promoter 952774 953773 1 - . ID=CGI_10025856; scaffold1583 GLEAN mRNA 953169 980453 0.999949 + . ID=CGI_10025857; scaffold1583 WUBlastX LINE_RTE-X 970049 970102 33 + . . scaffold1583 TRF Tandem_Repeat 970771 971566 1077 + . . scaffold1583 TRF Tandem_Repeat 970778 971566 1048 + . . scaffold1583 WUBlastX LINE_RTE-X 998945 999229 23 + . . scaffold1583 WUBlastX LINE_RTE-X 998996 999268 44 + . . scaffold1583 WUBlastX LINE_RTE-X 999068 999262 59 + . . scaffold1583 WUBlastX LINE_RTE-X 999086 999358 50 + . . scaffold1583 WUBlastX LINE_L2 1004970 1005476 170 - . . scaffold1583 GLEAN mRNA 1005974 1010817 1 - . ID=CGI_10025858; scaffold1583 GLEAN promoter 1010818 1011817 1 - . ID=CGI_10025858; scaffold1583 TRF Tandem_Repeat 1074823 1074979 305 + . . scaffold1583 GLEAN mRNA 1079575 1095496 0.937847 - . ID=CGI_10025859; scaffold1583 TRF Tandem_Repeat 1081933 1082429 459 + . . scaffold1583 TRF Tandem_Repeat 1087260 1087295 63 + . . scaffold1583 TRF Tandem_Repeat 1089802 1090120 525 + . . scaffold1583 TRF Tandem_Repeat 1094425 1094567 234 + . . scaffold1583 GLEAN promoter 1095497 1096496 0.937847 - . ID=CGI_10025859; scaffold1583 TRF Tandem_Repeat 1096588 1096674 93 + . . scaffold1583 TRF Tandem_Repeat 1096588 1096669 85 + . . scaffold1583 TRF Tandem_Repeat 1096595 1096674 108 + . . scaffold1583 TRF Tandem_Repeat 1096599 1096673 62 + . . scaffold1584 GLEAN promoter 11069 12068 1 + . ID=CGI_10015069; scaffold1584 GLEAN mRNA 12069 15692 1 + . ID=CGI_10015069; scaffold1584 TRF Tandem_Repeat 14406 14445 80 + . . scaffold1584 GLEAN mRNA 17588 32625 0.463442 - . ID=CGI_10015070; scaffold1584 TRF Tandem_Repeat 19215 19503 181 + . . scaffold1584 TRF Tandem_Repeat 19215 19500 193 + . . scaffold1584 WUBlastX LINE_L1-Tx1 20863 20919 31 + . . scaffold1584 WUBlastX LINE_L1 20967 21182 56 + . . scaffold1584 TRF Tandem_Repeat 22813 23019 193 + . . scaffold1584 TRF Tandem_Repeat 22813 23021 212 + . . scaffold1584 TRF Tandem_Repeat 31422 31725 252 + . . scaffold1584 TRF Tandem_Repeat 31432 31616 165 + . . scaffold1584 GLEAN promoter 32626 33625 0.463442 - . ID=CGI_10015070; scaffold1584 TRF Tandem_Repeat 41049 42162 1482 + . . scaffold1584 WUBlastX LINE_RTE-BovB 42682 43059 272 - . . scaffold1584 WUBlastX LINE_RTE-BovB 43040 43246 132 - . . scaffold1584 WUBlastX LINE_RTE-BovB 43273 43734 308 - . . scaffold1584 WUBlastX LINE_L1-Tx1 43447 43803 55 - . . scaffold1584 WUBlastX LINE_RTE-BovB 46608 47105 77 - . . scaffold1584 WUBlastX LINE_RTE-BovB 46765 47202 22 - . . scaffold1584 GLEAN mRNA 50047 50385 0.999984 - . ID=CGI_10015071; scaffold1584 GLEAN promoter 50386 51385 0.999984 - . ID=CGI_10015071; scaffold1584 GLEAN mRNA 51137 60910 0.993646 - . ID=CGI_10015072; scaffold1584 GLEAN promoter 60911 61910 0.993646 - . ID=CGI_10015072; scaffold1584 GLEAN mRNA 73868 96669 0.999351 - . ID=CGI_10015073; scaffold1584 TRF Tandem_Repeat 77898 77938 82 + . . scaffold1584 WUBlastX LINE_RTE-X 91995 92426 94 + . . scaffold1584 WUBlastX LINE_RTE-X 92034 92390 133 + . . scaffold1584 TRF Tandem_Repeat 94568 94623 112 + . . scaffold1584 GLEAN promoter 96340 97339 1 + . ID=CGI_10015074; scaffold1584 GLEAN promoter 96670 97669 0.999351 - . ID=CGI_10015073; scaffold1584 GLEAN mRNA 97340 102742 1 + . ID=CGI_10015074; scaffold1584 GLEAN mRNA 104924 110058 1 - . ID=CGI_10015075; scaffold1584 TRF Tandem_Repeat 108317 108357 82 + . . scaffold1584 GLEAN promoter 110059 111058 1 - . ID=CGI_10015075; scaffold1584 GLEAN promoter 110515 111514 0.777732 + . ID=CGI_10015076; scaffold1584 TRF Tandem_Repeat 110627 110672 92 + . . scaffold1584 GLEAN mRNA 111515 114509 0.777732 + . ID=CGI_10015076; scaffold1584 GLEAN promoter 124489 125488 0.999372 + . ID=CGI_10015077; scaffold1584 GLEAN mRNA 125489 125791 0.999372 + . ID=CGI_10015077; scaffold1584 GLEAN mRNA 127355 129221 1 - . ID=CGI_10015078; scaffold1584 GLEAN promoter 129222 130221 1 - . ID=CGI_10015078; scaffold1584 GLEAN promoter 132329 133328 1 + . ID=CGI_10015079; scaffold1584 GLEAN mRNA 133329 135070 1 + . ID=CGI_10015079; scaffold1584 GLEAN promoter 135088 136087 1 + . ID=CGI_10015080; scaffold1584 GLEAN mRNA 136088 137151 1 + . ID=CGI_10015080; scaffold1584 GLEAN mRNA 139190 162866 0.837406 - . ID=CGI_10015081; scaffold1584 TRF Tandem_Repeat 140455 140715 186 + . . scaffold1584 TRF Tandem_Repeat 140689 140943 395 + . . scaffold1584 TRF Tandem_Repeat 142213 142348 115 + . . scaffold1584 TRF Tandem_Repeat 151494 152183 409 + . . scaffold1584 TRF Tandem_Repeat 151498 152181 450 + . . scaffold1584 TRF Tandem_Repeat 152068 152270 90 + . . scaffold1584 TRF Tandem_Repeat 161355 161406 86 + . . scaffold1584 TRF Tandem_Repeat 162381 162428 96 + . . scaffold1584 GLEAN promoter 162867 163866 0.837406 - . ID=CGI_10015081; scaffold1584 GLEAN promoter 168036 169035 0.999995 + . ID=CGI_10015082; scaffold1584 GLEAN mRNA 169036 187063 0.999995 + . ID=CGI_10015082; scaffold1584 TRF Tandem_Repeat 187235 187280 58 + . . scaffold1584 TRF Tandem_Repeat 187449 188319 1196 + . . scaffold1584 TRF Tandem_Repeat 208664 208712 98 + . . scaffold1584 GLEAN promoter 211437 212436 1 + . ID=CGI_10015083; scaffold1584 GLEAN mRNA 212437 213807 1 + . ID=CGI_10015083; scaffold1584 TRF Tandem_Repeat 220680 220736 114 + . . scaffold1584 GLEAN promoter 233760 234759 0.999992 + . ID=CGI_10015084; scaffold1584 GLEAN mRNA 234760 236725 0.999992 + . ID=CGI_10015084; scaffold1584 TRF Tandem_Repeat 248989 249023 70 + . . scaffold1584 TRF Tandem_Repeat 257744 257791 96 + . . scaffold1584 TRF Tandem_Repeat 298286 298338 106 + . . scaffold1584 GLEAN promoter 307975 308974 0.991637 + . ID=CGI_10015085; scaffold1584 GLEAN mRNA 308975 315652 0.991637 + . ID=CGI_10015085; scaffold1584 GLEAN promoter 318520 319519 1 + . ID=CGI_10015086; scaffold1584 GLEAN mRNA 319520 321032 1 + . ID=CGI_10015086; scaffold1584 TRF Tandem_Repeat 321632 321725 80 + . . scaffold1584 TRF Tandem_Repeat 321818 321945 132 + . . scaffold1584 TRF Tandem_Repeat 321983 322076 98 + . . scaffold1584 TRF Tandem_Repeat 322168 322296 98 + . . scaffold1584 TRF Tandem_Repeat 322348 322507 137 + . . scaffold1584 TRF Tandem_Repeat 322584 322675 78 + . . scaffold1584 TRF Tandem_Repeat 322745 322901 145 + . . scaffold1584 GLEAN mRNA 325595 332854 0.500774 - . ID=CGI_10015087; scaffold1584 GLEAN promoter 332855 333854 0.500774 - . ID=CGI_10015087; scaffold1584 GLEAN mRNA 337235 338752 0.836238 - . ID=CGI_10015088; scaffold1584 GLEAN promoter 338753 339752 0.836238 - . ID=CGI_10015088; scaffold1584 GLEAN mRNA 342917 343357 0.69447 - . ID=CGI_10015089; scaffold1584 WUBlastX RC_Helitron 342956 343354 60 - . . scaffold1584 WUBlastX RC_Helitron 342965 343297 74 - . . scaffold1584 WUBlastX RC_Helitron 343016 343291 79 - . . scaffold1584 GLEAN promoter 343358 344357 0.69447 - . ID=CGI_10015089; scaffold1584 TRF Tandem_Repeat 345042 345072 62 + . . scaffold1584 GLEAN mRNA 346220 348352 0.777723 - . ID=CGI_10015090; scaffold1584 GLEAN promoter 348353 349352 0.777723 - . ID=CGI_10015090; scaffold1584 GLEAN promoter 358213 359212 0.963846 + . ID=CGI_10015092; scaffold1584 GLEAN mRNA 359213 362479 0.963846 + . ID=CGI_10015092; scaffold1584 GLEAN promoter 363698 364697 0.966075 + . ID=CGI_10015093; scaffold1584 GLEAN mRNA 364698 377587 0.966075 + . ID=CGI_10015093; scaffold1584 GLEAN mRNA 379441 384554 0.823881 - . ID=CGI_10015094; scaffold1584 GLEAN promoter 384555 385554 0.823881 - . ID=CGI_10015094; scaffold1584 TRF Tandem_Repeat 390038 390287 124 + . . scaffold1584 TRF Tandem_Repeat 390560 390584 50 + . . scaffold1584 TRF Tandem_Repeat 390584 390628 90 + . . scaffold1584 WUBlastX DNA_TcMar-Tc1 398287 398646 111 - . . scaffold1584 TRF Tandem_Repeat 399967 400004 58 + . . scaffold1584 TRF Tandem_Repeat 415693 415740 78 + . . scaffold1585 GLEAN promoter 1 70 0.558382 + . ID=CGI_10012581; scaffold1585 GLEAN mRNA 71 785 0.558382 + . ID=CGI_10012581; scaffold1585 GLEAN mRNA 1530 11079 0.999999 - . ID=CGI_10012582; scaffold1585 TRF Tandem_Repeat 7318 7343 52 + . . scaffold1585 WUBlastX LINE_RTE-X 7384 7599 71 + . . scaffold1585 WUBlastX LINE_RTE-X 7399 7662 52 + . . scaffold1585 GLEAN promoter 11080 12079 0.999999 - . ID=CGI_10012582; scaffold1585 GLEAN mRNA 12025 13030 1 - . ID=CGI_10012583; scaffold1585 GLEAN promoter 13031 14030 1 - . ID=CGI_10012583; scaffold1585 GLEAN mRNA 19438 22477 1 - . ID=CGI_10012584; scaffold1585 GLEAN promoter 22478 23477 1 - . ID=CGI_10012584; scaffold1585 GLEAN mRNA 23062 34202 0.934141 - . ID=CGI_10012585; scaffold1585 TRF Tandem_Repeat 31387 31448 115 + . . scaffold1585 GLEAN promoter 34203 35202 0.934141 - . ID=CGI_10012585; scaffold1585 GLEAN mRNA 34376 34861 1 - . ID=CGI_10012586; scaffold1585 GLEAN promoter 34862 35861 1 - . ID=CGI_10012586; scaffold1585 TRF Tandem_Repeat 38953 39328 330 + . . scaffold1585 TRF Tandem_Repeat 39040 39325 309 + . . scaffold1585 GLEAN mRNA 42818 46461 1 - . ID=CGI_10012587; scaffold1585 GLEAN promoter 46462 47461 1 - . ID=CGI_10012587; scaffold1585 GLEAN mRNA 47886 74932 0.392655 - . ID=CGI_10012588; scaffold1585 TRF Tandem_Repeat 53761 54121 656 + . . scaffold1585 TRF Tandem_Repeat 61158 61349 357 + . . scaffold1585 TRF Tandem_Repeat 62860 62889 60 + . . scaffold1585 WUBlastX LINE_RTE-X 67652 68137 99 + . . scaffold1585 TRF Tandem_Repeat 72897 72941 90 + . . scaffold1585 GLEAN promoter 74933 75932 0.392655 - . ID=CGI_10012588; scaffold1585 TRF Tandem_Repeat 75470 75497 56 + . . scaffold1585 TRF Tandem_Repeat 87526 88544 1566 + . . scaffold1585 TRF Tandem_Repeat 94137 94274 142 + . . scaffold1585 TRF Tandem_Repeat 94339 94387 98 + . . scaffold1585 GLEAN promoter 95471 96470 0.975462 + . ID=CGI_10012589; scaffold1585 GLEAN mRNA 96471 98806 0.975462 + . ID=CGI_10012589; scaffold1585 TRF Tandem_Repeat 98211 98253 50 + . . scaffold1585 TRF Tandem_Repeat 98425 98466 50 + . . scaffold1585 GLEAN mRNA 101436 108085 0.729329 - . ID=CGI_10012590; scaffold1585 TRF Tandem_Repeat 106435 106551 81 + . . scaffold1585 TRF Tandem_Repeat 106435 106551 99 + . . scaffold1585 TRF Tandem_Repeat 106445 106517 96 + . . scaffold1585 TRF Tandem_Repeat 107761 107826 132 + . . scaffold1585 GLEAN promoter 108086 109085 0.729329 - . ID=CGI_10012590; scaffold1585 TRF Tandem_Repeat 114838 114877 80 + . . scaffold1585 TRF Tandem_Repeat 136601 136641 82 + . . scaffold1585 GLEAN promoter 138741 139740 0.650787 + . ID=CGI_10012592; scaffold1585 GLEAN mRNA 139741 157964 0.650787 + . ID=CGI_10012592; scaffold1585 TRF Tandem_Repeat 145496 145606 91 + . . scaffold1585 TRF Tandem_Repeat 145497 145559 63 + . . scaffold1585 GLEAN promoter 160584 161583 1 + . ID=CGI_10012593; scaffold1585 GLEAN mRNA 161584 166659 1 + . ID=CGI_10012593; scaffold1585 TRF Tandem_Repeat 163197 163703 892 + . . scaffold1585 TRF Tandem_Repeat 165635 165713 158 + . . scaffold1585 GLEAN promoter 166748 167747 0.997972 + . ID=CGI_10012594; scaffold1585 GLEAN mRNA 167748 175810 0.997972 + . ID=CGI_10012594; scaffold1585 WUBlastX LINE_L1-Tx1 173740 173865 36 - . . scaffold1585 WUBlastX LINE_RTE-X 177105 177200 28 - . . scaffold1585 WUBlastX LINE_RTE-X 177787 177933 39 - . . scaffold1585 WUBlastX LINE_RTE-X 177811 177933 59 - . . scaffold1585 TRF Tandem_Repeat 178235 178493 308 + . . scaffold1585 TRF Tandem_Repeat 178235 178493 304 + . . scaffold1585 TRF Tandem_Repeat 178235 178493 304 + . . scaffold1585 TRF Tandem_Repeat 179143 179465 394 + . . scaffold1585 TRF Tandem_Repeat 179143 179466 405 + . . scaffold1585 GLEAN mRNA 192505 199782 1 - . ID=CGI_10012595; scaffold1585 TRF Tandem_Repeat 198875 198970 124 + . . scaffold1585 GLEAN promoter 199783 200782 1 - . ID=CGI_10012595; scaffold1585 GLEAN mRNA 204800 209951 0.925502 - . ID=CGI_10012596; scaffold1585 GLEAN promoter 209952 210951 0.925502 - . ID=CGI_10012596; scaffold1585 TRF Tandem_Repeat 209963 211747 2376 + . . scaffold1585 GLEAN promoter 218427 219426 0.999423 + . ID=CGI_10012597; scaffold1585 GLEAN mRNA 219427 233267 0.999423 + . ID=CGI_10012597; scaffold1585 GLEAN promoter 260769 261768 0.536999 + . ID=CGI_10012598; scaffold1585 GLEAN mRNA 261769 270690 0.536999 + . ID=CGI_10012598; scaffold1585 TRF Tandem_Repeat 274695 274737 86 + . . scaffold1585 WUBlastX DNA_NOF 275849 277066 124 + . . scaffold1585 WUBlastX DNA_NOF 276053 276958 176 + . . scaffold1585 TRF Tandem_Repeat 287030 287064 70 + . . scaffold1585 TRF Tandem_Repeat 288624 288805 204 + . . scaffold1585 TRF Tandem_Repeat 288624 288804 226 + . . scaffold1585 TRF Tandem_Repeat 288625 288805 192 + . . scaffold1585 TRF Tandem_Repeat 289669 289762 179 + . . scaffold1585 TRF Tandem_Repeat 290612 290716 94 + . . scaffold1585 TRF Tandem_Repeat 290646 290716 88 + . . scaffold1585 TRF Tandem_Repeat 291891 291995 65 + . . scaffold1585 TRF Tandem_Repeat 301843 301898 112 + . . scaffold1585 TRF Tandem_Repeat 304167 304242 143 + . . scaffold1585 GLEAN mRNA 317428 322400 1 - . ID=CGI_10012599; scaffold1585 TRF Tandem_Repeat 318128 318158 53 + . . scaffold1585 TRF Tandem_Repeat 320459 320495 74 + . . scaffold1585 TRF Tandem_Repeat 320714 320988 266 + . . scaffold1585 TRF Tandem_Repeat 321056 321081 52 + . . scaffold1585 GLEAN promoter 322401 323400 1 - . ID=CGI_10012599; scaffold1585 TRF Tandem_Repeat 322684 322725 84 + . . scaffold1585 GLEAN mRNA 326871 327926 0.998274 - . ID=CGI_10012600; scaffold1585 GLEAN promoter 327927 328926 0.998274 - . ID=CGI_10012600; scaffold1586 GLEAN promoter 14146 15145 0.651135 + . ID=CGI_10006366; scaffold1586 GLEAN mRNA 15146 24148 0.651135 + . ID=CGI_10006366; scaffold1586 TRF Tandem_Repeat 17712 17765 58 + . . scaffold1586 TRF Tandem_Repeat 17892 17936 90 + . . scaffold1586 TRF Tandem_Repeat 22411 22462 95 + . . scaffold1586 TRF Tandem_Repeat 25508 25629 64 + . . scaffold1586 TRF Tandem_Repeat 27401 27450 100 + . . scaffold1586 WUBlastX LTR_DIRS 30132 30233 52 - . . scaffold1586 WUBlastX LTR_DIRS 30230 32449 1116 - . . scaffold1586 WUBlastX LTR_DIRS 32454 32573 109 - . . scaffold1586 WUBlastX LTR_DIRS 32581 32931 178 - . . scaffold1586 WUBlastX LTR_DIRS 32581 33015 151 - . . scaffold1586 WUBlastX LTR_DIRS 32979 33479 124 - . . scaffold1586 WUBlastX LTR_DIRS 33090 33461 140 - . . scaffold1586 WUBlastX LTR_DIRS 33472 33618 40 - . . scaffold1586 GLEAN promoter 36838 37837 0.790901 + . ID=CGI_10006367; scaffold1586 GLEAN mRNA 37838 52277 0.790901 + . ID=CGI_10006367; scaffold1586 TRF Tandem_Repeat 43723 43771 98 + . . scaffold1586 TRF Tandem_Repeat 45109 45157 98 + . . scaffold1586 TRF Tandem_Repeat 48124 48175 52 + . . scaffold1586 TRF Tandem_Repeat 58476 58567 96 + . . scaffold1586 TRF Tandem_Repeat 58491 58555 53 + . . scaffold1586 TRF Tandem_Repeat 58595 58644 50 + . . scaffold1586 GLEAN promoter 59407 60406 0.999114 + . ID=CGI_10006368; scaffold1586 GLEAN mRNA 60407 66080 0.999114 + . ID=CGI_10006368; scaffold1586 WUBlastX LINE_Penelope 68726 68875 66 - . . scaffold1586 WUBlastX LINE_RTE-X 70886 71635 92 - . . scaffold1586 WUBlastX LINE_RTE-X 71021 71629 144 - . . scaffold1586 WUBlastX LINE_RTE-X 71828 72163 129 - . . scaffold1586 WUBlastX LINE_RTE-X 71885 72163 130 - . . scaffold1586 WUBlastX LINE_RTE-X 72135 72788 139 - . . scaffold1586 WUBlastX DNA_TcMar-Tc2 75556 75942 101 - . . scaffold1586 WUBlastX DNA_TcMar-Fot1 75781 76161 84 - . . scaffold1586 WUBlastX DNA_TcMar-Fot1 76257 76757 61 - . . scaffold1586 WUBlastX DNA_TcMar-Fot1 76257 76562 69 - . . scaffold1586 GLEAN mRNA 78263 79150 0.412771 - . ID=CGI_10006369; scaffold1586 GLEAN promoter 79151 80150 0.412771 - . ID=CGI_10006369; scaffold1586 WUBlastX DNA_Crypton 84502 84984 160 + . . scaffold1586 WUBlastX DNA_Crypton 85095 85415 45 + . . scaffold1586 GLEAN promoter 86074 87073 1 + . ID=CGI_10006370; scaffold1586 GLEAN mRNA 87074 89649 1 + . ID=CGI_10006370; scaffold1586 TRF Tandem_Repeat 94994 95028 61 + . . scaffold1586 GLEAN promoter 95822 96821 0.713699 + . ID=CGI_10006371; scaffold1586 GLEAN mRNA 96822 109367 0.713699 + . ID=CGI_10006371; scaffold1586 GLEAN mRNA 113559 114387 0.915068 - . ID=CGI_10006372; scaffold1586 GLEAN promoter 114388 115387 0.915068 - . ID=CGI_10006372; scaffold1586 TRF Tandem_Repeat 118726 118765 50 + . . scaffold1586 TRF Tandem_Repeat 119597 119660 128 + . . scaffold1586 TRF Tandem_Repeat 122775 122816 50 + . . scaffold1586 TRF Tandem_Repeat 125845 125889 90 + . . scaffold1586 TRF Tandem_Repeat 127153 127200 78 + . . scaffold1586 TRF Tandem_Repeat 128335 128360 52 + . . scaffold1586 TRF Tandem_Repeat 128437 128476 80 + . . scaffold1586 GLEAN mRNA 128473 135188 1 - . ID=CGI_10006373; scaffold1586 TRF Tandem_Repeat 133489 133721 315 + . . scaffold1586 TRF Tandem_Repeat 133938 134083 249 + . . scaffold1586 TRF Tandem_Repeat 134761 134817 54 + . . scaffold1586 TRF Tandem_Repeat 134762 134825 56 + . . scaffold1586 TRF Tandem_Repeat 134780 134814 54 + . . scaffold1586 GLEAN promoter 135189 136188 1 - . ID=CGI_10006373; scaffold1586 GLEAN mRNA 142424 149427 0.999999 - . ID=CGI_10006374; scaffold1586 TRF Tandem_Repeat 145040 145096 55 + . . scaffold1586 TRF Tandem_Repeat 147164 147221 107 + . . scaffold1586 TRF Tandem_Repeat 149131 149292 274 + . . scaffold1586 GLEAN promoter 149428 150427 0.999999 - . ID=CGI_10006374; scaffold1588 TRF Tandem_Repeat 25366 25391 52 + . . scaffold1588 TRF Tandem_Repeat 25872 25947 107 + . . scaffold1588 WUBlastX LTR_Ngaro 31446 31817 77 + . . scaffold1588 WUBlastX LTR_Ngaro 31584 31817 82 + . . scaffold1588 WUBlastX LTR_Ngaro 31826 31933 80 + . . scaffold1588 WUBlastX LTR_Ngaro 32249 32377 41 + . . scaffold1588 WUBlastX LTR_Ngaro 32270 32374 46 + . . scaffold1588 WUBlastX LTR_Ngaro 32497 32598 26 + . . scaffold1588 TRF Tandem_Repeat 46440 46471 57 + . . scaffold1588 TRF Tandem_Repeat 49030 51028 2587 + . . scaffold1588 TRF Tandem_Repeat 49030 51028 2567 + . . scaffold1588 GLEAN mRNA 56027 117187 0.840099 - . ID=CGI_10014772; scaffold1588 TRF Tandem_Repeat 69314 69354 57 + . . scaffold1588 WUBlastX LINE_RTE-X 71729 72427 160 + . . scaffold1588 WUBlastX LINE_RTE-X 71855 72454 203 + . . scaffold1588 WUBlastX LINE_L1 71969 72565 83 + . . scaffold1588 WUBlastX LINE_RTE-X 71969 72430 230 + . . scaffold1588 WUBlastX LINE_RTE-X 74325 74780 163 + . . scaffold1588 WUBlastX LINE_L1? 74421 74927 22 + . . scaffold1588 WUBlastX LINE_I 75595 75903 31 + . . scaffold1588 WUBlastX LINE_RTE-X 75733 75921 41 + . . scaffold1588 WUBlastX LINE_RTE-X 75733 75993 28 + . . scaffold1588 GLEAN promoter 117188 118187 0.840099 - . ID=CGI_10014772; scaffold1588 TRF Tandem_Repeat 117836 117896 79 + . . scaffold1588 TRF Tandem_Repeat 117836 117897 63 + . . scaffold1588 TRF Tandem_Repeat 123129 123211 159 + . . scaffold1588 TRF Tandem_Repeat 123584 123870 423 + . . scaffold1588 TRF Tandem_Repeat 123584 123872 497 + . . scaffold1588 WUBlastX LINE_RTE-X 129077 129196 46 + . . scaffold1588 WUBlastX LINE_RTE-X 129144 129392 41 + . . scaffold1588 WUBlastX LINE_RTE-X 129240 129413 45 + . . scaffold1588 WUBlastX LINE_RTE-X 129240 129494 42 + . . scaffold1588 TRF Tandem_Repeat 134415 134448 52 + . . scaffold1588 TRF Tandem_Repeat 138689 138765 73 + . . scaffold1588 TRF Tandem_Repeat 138690 138748 55 + . . scaffold1588 TRF Tandem_Repeat 138714 138765 68 + . . scaffold1588 TRF Tandem_Repeat 140042 140102 122 + . . scaffold1588 TRF Tandem_Repeat 140106 140130 50 + . . scaffold1588 GLEAN mRNA 141828 142646 0.999719 - . ID=CGI_10014773; scaffold1588 GLEAN promoter 142647 143646 0.999719 - . ID=CGI_10014773; scaffold1588 WUBlastX LINE_L1-Tx1 149574 149927 136 - . . scaffold1588 TRF Tandem_Repeat 157570 158580 1272 + . . scaffold1588 TRF Tandem_Repeat 159994 160051 91 + . . scaffold1588 TRF Tandem_Repeat 159997 160050 74 + . . scaffold1588 GLEAN promoter 167399 168398 0.996819 + . ID=CGI_10014774; scaffold1588 GLEAN mRNA 168399 183811 0.996819 + . ID=CGI_10014774; scaffold1588 GLEAN promoter 183792 184791 1 + . ID=CGI_10014775; scaffold1588 GLEAN mRNA 184792 187200 1 + . ID=CGI_10014775; scaffold1588 WUBlastX DNA_TcMar-Tc1 188667 189695 454 + . . scaffold1588 GLEAN promoter 189525 190524 0.996496 + . ID=CGI_10014776; scaffold1588 GLEAN mRNA 190525 193741 0.996496 + . ID=CGI_10014776; scaffold1588 TRF Tandem_Repeat 194972 195014 54 + . . scaffold1588 GLEAN promoter 195257 196256 0.738042 + . ID=CGI_10014777; scaffold1588 GLEAN mRNA 196257 211816 0.738042 + . ID=CGI_10014777; scaffold1588 TRF Tandem_Repeat 201038 201298 330 + . . scaffold1588 GLEAN mRNA 206031 207342 0.98759 - . ID=CGI_10014778; scaffold1588 GLEAN promoter 207343 208342 0.98759 - . ID=CGI_10014778; scaffold1588 GLEAN mRNA 207418 221223 0.794079 - . ID=CGI_10014779; scaffold1588 TRF Tandem_Repeat 213693 213729 74 + . . scaffold1588 GLEAN promoter 217095 218094 1 + . ID=CGI_10014780; scaffold1588 GLEAN mRNA 218095 218418 1 + . ID=CGI_10014780; scaffold1588 GLEAN promoter 221224 222223 0.794079 - . ID=CGI_10014779; scaffold1588 GLEAN promoter 233699 234698 0.999755 + . ID=CGI_10014781; scaffold1588 GLEAN mRNA 234699 248001 0.999755 + . ID=CGI_10014781; scaffold1588 TRF Tandem_Repeat 237512 237711 220 + . . scaffold1588 TRF Tandem_Repeat 240388 241344 1212 + . . scaffold1588 TRF Tandem_Repeat 241517 241559 68 + . . scaffold1588 GLEAN mRNA 248296 253087 1 - . ID=CGI_10014782; scaffold1588 GLEAN promoter 253088 254087 1 - . ID=CGI_10014782; scaffold1588 GLEAN promoter 253436 254435 0.994208 + . ID=CGI_10014783; scaffold1588 GLEAN mRNA 254436 255602 0.994208 + . ID=CGI_10014783; scaffold1588 GLEAN mRNA 256596 257132 0.999992 - . ID=CGI_10014784; scaffold1588 GLEAN promoter 257133 258132 0.999992 - . ID=CGI_10014784; scaffold1588 GLEAN mRNA 257174 262325 0.999874 - . ID=CGI_10014785; scaffold1588 GLEAN promoter 262326 263325 0.999874 - . ID=CGI_10014785; scaffold1588 GLEAN mRNA 266551 267903 0.555326 - . ID=CGI_10014786; scaffold1588 GLEAN promoter 267904 268903 0.555326 - . ID=CGI_10014786; scaffold1588 GLEAN promoter 268686 269685 0.308213 + . ID=CGI_10014787; scaffold1588 TRF Tandem_Repeat 269399 269513 151 + . . scaffold1588 GLEAN mRNA 269686 298816 0.308213 + . ID=CGI_10014787; scaffold1588 GLEAN mRNA 302731 303150 0.776794 - . ID=CGI_10014788; scaffold1588 GLEAN promoter 303151 304150 0.776794 - . ID=CGI_10014788; scaffold1588 WUBlastX LTR_Gypsy 303250 304137 56 - . . scaffold1588 WUBlastX LTR_Gypsy 303511 304158 161 - . . scaffold1588 WUBlastX LTR_Gypsy 303673 306693 1802 - . . scaffold1588 WUBlastX LTR_Gypsy 304162 307197 1543 - . . scaffold1588 WUBlastX LTR_Gypsy 306577 307434 111 - . . scaffold1588 WUBlastX LTR_Gypsy 307467 308252 113 - . . scaffold1588 WUBlastX LTR_Gypsy-Cigr 307599 308135 183 - . . scaffold1588 WUBlastX RC_Helitron 313804 314193 77 + . . scaffold1588 WUBlastX DNA_MuDR 314452 316803 717 + . . scaffold1588 TRF Tandem_Repeat 320102 320135 61 + . . scaffold1588 GLEAN mRNA 323254 325332 0.989218 - . ID=CGI_10014790; scaffold1588 WUBlastX DNA_TcMar-m44 323503 323802 185 - . . scaffold1588 GLEAN promoter 325333 326332 0.989218 - . ID=CGI_10014790; scaffold1588 TRF Tandem_Repeat 335005 335036 64 + . . scaffold1588 TRF Tandem_Repeat 335031 335098 118 + . . scaffold1588 TRF Tandem_Repeat 337469 337518 75 + . . scaffold1588 TRF Tandem_Repeat 359366 359428 126 + . . scaffold1588 TRF Tandem_Repeat 359428 359465 76 + . . scaffold1588 WUBlastX LINE_L1 380475 381086 83 + . . scaffold1588 WUBlastX LTR_Gypsy 406507 406995 168 - . . scaffold1588 WUBlastX LTR_Gypsy 407036 408217 207 - . . scaffold1589 GLEAN promoter 2814 3813 0.999128 + . ID=CGI_10024101; scaffold1589 GLEAN mRNA 3814 6941 0.999128 + . ID=CGI_10024101; scaffold1589 GLEAN promoter 6348 7347 0.999351 + . ID=CGI_10024102; scaffold1589 GLEAN mRNA 7348 19163 0.999351 + . ID=CGI_10024102; scaffold1589 GLEAN mRNA 9550 14840 1 - . ID=CGI_10024103; scaffold1589 GLEAN promoter 14841 15840 1 - . ID=CGI_10024103; scaffold1589 TRF Tandem_Repeat 15138 15172 70 + . . scaffold1589 TRF Tandem_Repeat 15437 15485 75 + . . scaffold1589 GLEAN mRNA 20258 40825 0.999675 - . ID=CGI_10024104; scaffold1589 TRF Tandem_Repeat 35156 35186 62 + . . scaffold1589 GLEAN promoter 40826 41825 0.999675 - . ID=CGI_10024104; scaffold1589 WUBlastX LINE_CR1-L2 60770 60961 28 - . . scaffold1589 WUBlastX LINE_CR1-L2 61059 61142 20 - . . scaffold1589 WUBlastX LINE_CR1-L2 61074 61148 48 - . . scaffold1589 GLEAN mRNA 62955 75492 0.811443 - . ID=CGI_10024105; scaffold1589 GLEAN promoter 75493 76492 0.811443 - . ID=CGI_10024105; scaffold1589 GLEAN promoter 75689 76688 0.681403 + . ID=CGI_10024106; scaffold1589 GLEAN mRNA 76689 101639 0.681403 + . ID=CGI_10024106; scaffold1589 TRF Tandem_Repeat 86914 87400 681 + . . scaffold1589 TRF Tandem_Repeat 89881 90086 335 + . . scaffold1589 TRF Tandem_Repeat 95520 96192 1024 + . . scaffold1589 TRF Tandem_Repeat 95520 96192 672 + . . scaffold1589 TRF Tandem_Repeat 97571 98448 1382 + . . scaffold1589 TRF Tandem_Repeat 97571 98448 1388 + . . scaffold1589 TRF Tandem_Repeat 105345 105572 438 + . . scaffold1589 GLEAN mRNA 106343 110940 1 - . ID=CGI_10024107; scaffold1589 GLEAN promoter 110686 111685 0.668529 + . ID=CGI_10024108; scaffold1589 GLEAN promoter 110941 111940 1 - . ID=CGI_10024107; scaffold1589 GLEAN mRNA 111686 137363 0.668529 + . ID=CGI_10024108; scaffold1589 TRF Tandem_Repeat 112005 112072 136 + . . scaffold1589 TRF Tandem_Repeat 117023 117098 152 + . . scaffold1589 TRF Tandem_Repeat 124738 125768 1540 + . . scaffold1589 TRF Tandem_Repeat 126680 126721 84 + . . scaffold1589 WUBlastX LINE_Penelope 128421 129014 63 + . . scaffold1589 WUBlastX LINE_Penelope 128562 129008 79 + . . scaffold1589 TRF Tandem_Repeat 129042 129221 148 + . . scaffold1589 TRF Tandem_Repeat 129042 129221 216 + . . scaffold1589 TRF Tandem_Repeat 129817 129903 113 + . . scaffold1589 TRF Tandem_Repeat 131894 132055 101 + . . scaffold1589 TRF Tandem_Repeat 131896 131997 132 + . . scaffold1589 TRF Tandem_Repeat 132057 132222 172 + . . scaffold1589 TRF Tandem_Repeat 147993 148041 98 + . . scaffold1589 WUBlastX DNA_Maverick 150003 151355 310 + . . scaffold1589 WUBlastX DNA_Maverick 150717 151376 355 + . . scaffold1589 WUBlastX DNA_Maverick 151351 151482 48 + . . scaffold1589 WUBlastX DNA_Maverick 151414 151563 53 + . . scaffold1589 WUBlastX DNA_Maverick 151610 152128 212 + . . scaffold1589 WUBlastX DNA_Maverick 152092 152310 89 + . . scaffold1589 WUBlastX DNA_Maverick 153142 153306 39 + . . scaffold1589 WUBlastX DNA_Maverick 153151 153216 41 + . . scaffold1589 WUBlastX DNA_Maverick 153169 153495 30 + . . scaffold1589 WUBlastX DNA_Maverick 153235 153306 61 + . . scaffold1589 WUBlastX DNA_Maverick 153439 153519 62 + . . scaffold1589 WUBlastX DNA_Maverick 153919 154767 258 + . . scaffold1589 WUBlastX DNA_Maverick 154144 154767 359 + . . scaffold1589 WUBlastX DNA_Maverick 155154 155786 364 - . . scaffold1589 WUBlastX DNA_Maverick 155995 156441 114 - . . scaffold1589 WUBlastX DNA_Maverick 156450 157658 633 - . . scaffold1589 WUBlastX DNA_Maverick 157664 157747 36 - . . scaffold1589 WUBlastX DNA_Maverick 158411 158482 20 - . . scaffold1589 WUBlastX DNA_Maverick 158501 158644 52 - . . scaffold1589 WUBlastX DNA_Maverick 158678 159775 484 - . . scaffold1589 WUBlastX LTR_Gypsy 159014 159937 30 - . . scaffold1589 GLEAN mRNA 160332 160679 0.99991 - . ID=CGI_10024109; scaffold1589 GLEAN promoter 160680 161679 0.99991 - . ID=CGI_10024109; scaffold1589 WUBlastX DNA_Zator 167423 169885 877 + . . scaffold1589 WUBlastX DNA_Zator 169652 170188 54 + . . scaffold1589 WUBlastX DNA_Zator 170342 170521 63 + . . scaffold1589 WUBlastX DNA_Zator 170992 171165 60 + . . scaffold1589 TRF Tandem_Repeat 173002 173058 96 + . . scaffold1589 TRF Tandem_Repeat 174274 174306 66 + . . scaffold1589 WUBlastX LINE_L1-Tx1 175097 177076 828 + . . scaffold1589 WUBlastX LINE_L1-Tx1 177021 177431 169 + . . scaffold1589 WUBlastX LINE_L1 177412 177627 93 + . . scaffold1589 WUBlastX LINE_L1-Tx1 177533 178195 27 + . . scaffold1589 WUBlastX LINE_L1-Tx1 177590 178078 106 + . . scaffold1589 WUBlastX LTR_Gypsy 178580 179125 52 - . . scaffold1589 WUBlastX LTR_Gypsy 178703 179125 168 - . . scaffold1589 WUBlastX LTR_Gypsy 178709 179206 133 - . . scaffold1589 WUBlastX LTR_Gypsy 179618 180154 32 - . . scaffold1589 WUBlastX LTR_Gypsy 179711 180091 51 - . . scaffold1589 WUBlastX LTR_Gypsy 179807 180136 87 - . . scaffold1589 WUBlastX LTR_Gypsy 180139 180249 64 - . . scaffold1589 WUBlastX LTR_Gypsy 180139 180297 48 - . . scaffold1589 WUBlastX LTR_Gypsy 180145 180336 36 - . . scaffold1589 TRF Tandem_Repeat 183891 183948 71 + . . scaffold1589 TRF Tandem_Repeat 183891 183960 106 + . . scaffold1589 TRF Tandem_Repeat 183902 183960 84 + . . scaffold1589 WUBlastX DNA_Harbinger 189578 189832 38 + . . scaffold1589 WUBlastX DNA_Harbinger 189796 190023 40 + . . scaffold1589 WUBlastX DNA_Harbinger 189829 189987 58 + . . scaffold1589 WUBlastX DNA_Harbinger 190455 190508 23 + . . scaffold1589 WUBlastX DNA_Harbinger 190746 190910 94 + . . scaffold1589 TRF Tandem_Repeat 192005 192056 97 + . . scaffold1589 TRF Tandem_Repeat 200013 200067 110 + . . scaffold1589 TRF Tandem_Repeat 203147 203376 289 + . . scaffold1589 TRF Tandem_Repeat 203988 204305 332 + . . scaffold1589 TRF Tandem_Repeat 207370 207757 193 + . . scaffold1589 TRF Tandem_Repeat 207374 207757 189 + . . scaffold1589 TRF Tandem_Repeat 208832 209193 93 + . . scaffold1589 TRF Tandem_Repeat 208840 209153 165 + . . scaffold1589 TRF Tandem_Repeat 208854 209193 215 + . . scaffold1589 TRF Tandem_Repeat 208966 209194 198 + . . scaffold1589 WUBlastX LTR_Gypsy 212067 212540 159 - . . scaffold1589 WUBlastX LTR_Gypsy 212226 212540 259 - . . scaffold1589 WUBlastX LTR_Gypsy 212534 212584 25 - . . scaffold1589 WUBlastX LTR_Gypsy 212551 212721 84 - . . scaffold1589 WUBlastX LTR_Gypsy 212590 212799 85 - . . scaffold1589 WUBlastX LTR_Gypsy 212744 212908 66 - . . scaffold1589 TRF Tandem_Repeat 215545 215586 84 + . . scaffold1589 TRF Tandem_Repeat 217582 217621 80 + . . scaffold1589 TRF Tandem_Repeat 221802 221875 123 + . . scaffold1589 TRF Tandem_Repeat 228375 228426 104 + . . scaffold1589 TRF Tandem_Repeat 228426 228467 84 + . . scaffold1589 TRF Tandem_Repeat 236218 236284 62 + . . scaffold1589 TRF Tandem_Repeat 239717 239753 74 + . . scaffold1589 TRF Tandem_Repeat 240263 240329 53 + . . scaffold1589 TRF Tandem_Repeat 240263 240329 64 + . . scaffold1589 WUBlastX DNA_PiggyBac 241040 241366 75 - . . scaffold1589 WUBlastX DNA_PiggyBac 241375 241572 63 - . . scaffold1589 WUBlastX DNA_PiggyBac 241539 241862 59 - . . scaffold1589 WUBlastX DNA_PiggyBac 241656 241847 113 - . . scaffold1589 WUBlastX DNA_PiggyBac 242184 242402 21 - . . scaffold1589 WUBlastX DNA_PiggyBac 242232 242390 57 - . . scaffold1589 WUBlastX DNA_PiggyBac 242292 242402 77 - . . scaffold1589 WUBlastX DNA_PiggyBac 243002 243208 20 - . . scaffold1589 WUBlastX DNA_PiggyBac 243011 243178 83 - . . scaffold1589 WUBlastX DNA_PiggyBac 243433 243564 65 - . . scaffold1589 WUBlastX DNA_PiggyBac 243940 244302 91 - . . scaffold1589 WUBlastX DNA_PiggyBac 244018 244335 121 - . . scaffold1589 TRF Tandem_Repeat 251102 251140 78 + . . scaffold1589 WUBlastX DNA_Kolobok-IS4 253069 254211 287 - . . scaffold1589 WUBlastX DNA_IS4EU 254008 254259 51 - . . scaffold1589 WUBlastX DNA_IS4EU 254480 255004 113 - . . scaffold1589 WUBlastX LTR_Gypsy 264544 264648 41 - . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 264645 265532 273 - . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 264756 265484 500 - . . scaffold1589 WUBlastX LTR_Gypsy 265520 266068 216 - . . scaffold1589 WUBlastX LTR_Gypsy 266089 267036 339 - . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 266278 267018 566 - . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 266952 267437 339 - . . scaffold1589 WUBlastX LTR_Gypsy 266976 267563 218 - . . scaffold1589 WUBlastX LTR_Gypsy 267356 267952 152 - . . scaffold1589 WUBlastX LTR_Gypsy 267422 268084 137 - . . scaffold1589 TRF Tandem_Repeat 268648 268690 50 + . . scaffold1589 TRF Tandem_Repeat 268648 268711 65 + . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 268714 269463 41 - . . scaffold1589 WUBlastX LTR_Gypsy 268741 269292 68 - . . scaffold1589 WUBlastX LTR_Gypsy 268741 269160 74 - . . scaffold1589 WUBlastX LTR_Gypsy 268858 269196 76 - . . scaffold1589 TRF Tandem_Repeat 269483 269547 121 + . . scaffold1589 WUBlastX DNA_IS4EU 270506 270769 37 + . . scaffold1589 GLEAN mRNA 279757 287553 0.968345 - . ID=CGI_10024110; scaffold1589 WUBlastX LTR_Copia 280111 280314 34 - . . scaffold1589 WUBlastX LTR_Copia 280515 280574 28 - . . scaffold1589 WUBlastX LTR_Gypsy 280536 282038 464 - . . scaffold1589 WUBlastX LTR_Gypsy 280773 282626 1075 - . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 282617 284251 888 - . . scaffold1589 WUBlastX LTR_Gypsy 283592 285142 113 - . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 284600 285136 147 - . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 284669 285253 139 - . . scaffold1589 GLEAN promoter 287554 288553 0.968345 - . ID=CGI_10024110; scaffold1589 TRF Tandem_Repeat 289390 289458 102 + . . scaffold1589 TRF Tandem_Repeat 289595 289630 58 + . . scaffold1589 TRF Tandem_Repeat 308180 308216 74 + . . scaffold1589 GLEAN mRNA 308518 321562 0.998727 - . ID=CGI_10024111; scaffold1589 TRF Tandem_Repeat 309301 309325 50 + . . scaffold1589 TRF Tandem_Repeat 311917 312066 273 + . . scaffold1589 GLEAN promoter 320727 321726 0.999922 + . ID=CGI_10024112; scaffold1589 GLEAN promoter 321563 322562 0.998727 - . ID=CGI_10024111; scaffold1589 GLEAN mRNA 321727 328111 0.999922 + . ID=CGI_10024112; scaffold1589 TRF Tandem_Repeat 324874 324904 62 + . . scaffold1589 TRF Tandem_Repeat 333520 333576 80 + . . scaffold1589 GLEAN mRNA 334177 353767 0.999676 - . ID=CGI_10024113; scaffold1589 TRF Tandem_Repeat 334870 335025 244 + . . scaffold1589 TRF Tandem_Repeat 340840 340888 98 + . . scaffold1589 TRF Tandem_Repeat 342778 343028 421 + . . scaffold1589 TRF Tandem_Repeat 345975 346046 144 + . . scaffold1589 TRF Tandem_Repeat 346647 346709 119 + . . scaffold1589 TRF Tandem_Repeat 351541 351581 82 + . . scaffold1589 TRF Tandem_Repeat 352114 352165 104 + . . scaffold1589 GLEAN promoter 353768 354767 0.999676 - . ID=CGI_10024113; scaffold1589 GLEAN promoter 355773 356772 0.999977 + . ID=CGI_10024114; scaffold1589 GLEAN mRNA 356773 363295 0.999977 + . ID=CGI_10024114; scaffold1589 TRF Tandem_Repeat 360363 360448 86 + . . scaffold1589 TRF Tandem_Repeat 366904 366935 64 + . . scaffold1589 GLEAN promoter 369243 370242 0.643157 + . ID=CGI_10024115; scaffold1589 GLEAN mRNA 370243 390217 0.643157 + . ID=CGI_10024115; scaffold1589 WUBlastX LINE_L1-Tx1 379966 380031 21 + . . scaffold1589 WUBlastX LINE_L1 380546 380629 25 + . . scaffold1589 WUBlastX LINE_L1 380576 380629 27 + . . scaffold1589 WUBlastX LINE_L1-Tx1 380628 381257 301 + . . scaffold1589 WUBlastX LINE_L1 380772 381461 93 + . . scaffold1589 WUBlastX LINE_L1 381478 381546 22 + . . scaffold1589 TRF Tandem_Repeat 388808 388875 70 + . . scaffold1589 GLEAN mRNA 396798 423094 0.722572 - . ID=CGI_10024116; scaffold1589 TRF Tandem_Repeat 397902 398194 496 + . . scaffold1589 TRF Tandem_Repeat 397903 398025 69 + . . scaffold1589 TRF Tandem_Repeat 398018 398139 76 + . . scaffold1589 GLEAN promoter 423095 424094 0.722572 - . ID=CGI_10024116; scaffold1589 TRF Tandem_Repeat 426767 426829 126 + . . scaffold1589 TRF Tandem_Repeat 431588 431615 56 + . . scaffold1589 TRF Tandem_Repeat 433430 433472 86 + . . scaffold1589 TRF Tandem_Repeat 437046 438196 147 + . . scaffold1589 TRF Tandem_Repeat 437490 438221 641 + . . scaffold1589 TRF Tandem_Repeat 437522 438221 641 + . . scaffold1589 TRF Tandem_Repeat 437623 438250 536 + . . scaffold1589 TRF Tandem_Repeat 439170 439210 82 + . . scaffold1589 GLEAN promoter 457196 458195 0.999999 + . ID=CGI_10024117; scaffold1589 GLEAN mRNA 458196 464921 0.999999 + . ID=CGI_10024117; scaffold1589 GLEAN mRNA 464819 490421 0.728523 - . ID=CGI_10024118; scaffold1589 GLEAN promoter 490422 491421 0.728523 - . ID=CGI_10024118; scaffold1589 TRF Tandem_Repeat 490535 490600 105 + . . scaffold1589 TRF Tandem_Repeat 490645 490710 114 + . . scaffold1589 TRF Tandem_Repeat 490755 490814 120 + . . scaffold1589 GLEAN mRNA 490858 492981 0.999998 - . ID=CGI_10024119; scaffold1589 TRF Tandem_Repeat 491178 491213 63 + . . scaffold1589 GLEAN promoter 492982 493981 0.999998 - . ID=CGI_10024119; scaffold1589 TRF Tandem_Repeat 509348 509393 83 + . . scaffold1589 GLEAN promoter 543376 544375 0.999995 + . ID=CGI_10024120; scaffold1589 GLEAN mRNA 544376 572522 0.999995 + . ID=CGI_10024120; scaffold1589 TRF Tandem_Repeat 556004 556034 53 + . . scaffold1589 TRF Tandem_Repeat 556524 556681 201 + . . scaffold1589 TRF Tandem_Repeat 556528 556686 183 + . . scaffold1589 TRF Tandem_Repeat 556528 556686 237 + . . scaffold1589 TRF Tandem_Repeat 556552 556684 91 + . . scaffold1589 TRF Tandem_Repeat 559860 559917 116 + . . scaffold1589 TRF Tandem_Repeat 566754 566834 153 + . . scaffold1589 TRF Tandem_Repeat 568510 569113 778 + . . scaffold1589 TRF Tandem_Repeat 570626 570663 76 + . . scaffold1589 GLEAN mRNA 576775 584795 0.679857 - . ID=CGI_10024121; scaffold1589 GLEAN promoter 584796 585795 0.679857 - . ID=CGI_10024121; scaffold1589 WUBlastX LTR_Gypsy 586335 587246 152 + . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 586338 587009 161 + . . scaffold1589 WUBlastX LTR_Gypsy 587237 587752 153 + . . scaffold1589 WUBlastX LTR_Gypsy 588284 588358 24 + . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 589103 589453 21 + . . scaffold1589 WUBlastX LTR_Gypsy 589170 589208 23 + . . scaffold1589 WUBlastX LTR_Gypsy 589208 589450 36 + . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 589259 591490 1563 + . . scaffold1589 WUBlastX LTR_Gypsy 591380 591511 37 + . . scaffold1589 GLEAN mRNA 592118 603104 0.965132 - . ID=CGI_10024122; scaffold1589 WUBlastX LTR_Copia 593760 593903 23 + . . scaffold1589 WUBlastX LTR_Gypsy 593825 595015 961 + . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 594935 595033 51 + . . scaffold1589 WUBlastX LTR_Gypsy-Cigr 594962 595057 51 + . . scaffold1589 WUBlastX LTR_Copia 595315 595395 26 + . . scaffold1589 GLEAN promoter 603105 604104 0.965132 - . ID=CGI_10024122; scaffold1589 GLEAN mRNA 603712 607485 0.935628 - . ID=CGI_10024123; scaffold1589 GLEAN promoter 606509 607508 0.999607 + . ID=CGI_10024124; scaffold1589 GLEAN promoter 607486 608485 0.935628 - . ID=CGI_10024123; scaffold1589 GLEAN mRNA 607509 617026 0.999607 + . ID=CGI_10024124; scaffold1589 TRF Tandem_Repeat 615610 615650 82 + . . scaffold1589 GLEAN mRNA 627432 638234 0.924857 - . ID=CGI_10024125; scaffold1589 TRF Tandem_Repeat 633929 633979 102 + . . scaffold1589 GLEAN promoter 638235 639234 0.924857 - . ID=CGI_10024125; scaffold1589 TRF Tandem_Repeat 638239 638321 62 + . . scaffold1589 TRF Tandem_Repeat 641882 641927 92 + . . scaffold1589 TRF Tandem_Repeat 644039 644083 90 + . . scaffold1589 TRF Tandem_Repeat 647564 647617 99 + . . scaffold1589 TRF Tandem_Repeat 655849 655884 72 + . . scaffold1589 TRF Tandem_Repeat 657052 657485 453 + . . scaffold1589 TRF Tandem_Repeat 657056 657485 504 + . . scaffold1589 TRF Tandem_Repeat 658683 658944 425 + . . scaffold1589 TRF Tandem_Repeat 658685 658944 367 + . . scaffold1589 TRF Tandem_Repeat 663244 663273 60 + . . scaffold1589 GLEAN mRNA 663543 667399 0.911736 - . ID=CGI_10024126; scaffold1589 GLEAN promoter 667400 668399 0.911736 - . ID=CGI_10024126; scaffold1589 GLEAN mRNA 675206 689259 0.999332 - . ID=CGI_10024127; scaffold1589 GLEAN promoter 689260 690259 0.999332 - . ID=CGI_10024127; scaffold1589 WUBlastX LTR_DIRS 696918 697178 65 - . . scaffold1589 WUBlastX LTR_DIRS 696963 697226 111 - . . scaffold1589 TRF Tandem_Repeat 704335 704442 146 + . . scaffold1589 GLEAN promoter 711956 712955 0.999933 + . ID=CGI_10024128; scaffold1589 GLEAN mRNA 712956 718399 0.999933 + . ID=CGI_10024128; scaffold1589 TRF Tandem_Repeat 733835 733862 56 + . . scaffold1589 TRF Tandem_Repeat 734582 734620 60 + . . scaffold1589 TRF Tandem_Repeat 734834 735750 1090 + . . scaffold1589 TRF Tandem_Repeat 737183 737370 340 + . . scaffold1589 WUBlastX LINE_RTE-X 742715 743587 81 + . . scaffold1589 WUBlastX LINE_RTE-X 742988 743572 168 + . . scaffold1589 TRF Tandem_Repeat 745463 745497 70 + . . scaffold1589 TRF Tandem_Repeat 760839 760872 52 + . . scaffold1589 GLEAN promoter 769388 770387 0.516431 + . ID=CGI_10024129; scaffold1589 GLEAN mRNA 770388 788276 0.516431 + . ID=CGI_10024129; scaffold1589 TRF Tandem_Repeat 771909 772042 83 + . . scaffold1589 TRF Tandem_Repeat 773031 773147 100 + . . scaffold1589 TRF Tandem_Repeat 778082 778129 96 + . . scaffold1589 TRF Tandem_Repeat 780585 780614 60 + . . scaffold1589 TRF Tandem_Repeat 780868 780906 69 + . . scaffold1589 TRF Tandem_Repeat 781747 781814 136 + . . scaffold1589 TRF Tandem_Repeat 782729 782760 64 + . . scaffold1589 WUBlastX LTR_Ngaro 788422 788778 20 - . . scaffold1589 WUBlastX LTR_Ngaro 788530 788778 29 - . . scaffold1589 WUBlastX LTR_Ngaro 788953 789138 68 - . . scaffold1589 WUBlastX LTR_Ngaro 788992 789138 84 - . . scaffold1589 TRF Tandem_Repeat 794014 794052 78 + . . scaffold1589 WUBlastX LTR_Ngaro 811573 812316 519 - . . scaffold1589 WUBlastX LTR_Ngaro 812300 812731 134 - . . scaffold1589 WUBlastX LTR_Ngaro 812336 812674 153 - . . scaffold1589 WUBlastX LINE_L2 822192 822461 39 + . . scaffold1589 TRF Tandem_Repeat 848240 848278 51 + . . scaffold1589 WUBlastX DNA_Harbinger 850859 851158 105 - . . scaffold1589 WUBlastX LINE_CR1-L2 851760 852245 202 + . . scaffold1589 WUBlastX LINE_I 853173 853322 30 + . . scaffold1589 WUBlastX LINE_CR1 853281 853322 33 + . . scaffold1589 WUBlastX LINE_CR1-L2 853374 856406 1436 + . . scaffold1589 WUBlastX LINE_CR1-L2 856433 856531 30 + . . scaffold1589 TRF Tandem_Repeat 857961 857995 70 + . . scaffold1589 WUBlastX DNA_Harbinger 859780 860142 222 + . . scaffold1589 WUBlastX DNA_Harbinger 859792 860211 79 + . . scaffold1589 WUBlastX DNA_Harbinger 861724 861936 75 - . . scaffold1589 TRF Tandem_Repeat 864783 864826 88 + . . scaffold1589 WUBlastX LINE_RTE-BovB 865448 865591 21 - . . scaffold1589 WUBlastX LINE_RTE-BovB 865499 865594 45 - . . scaffold1589 WUBlastX LINE_RTE-BovB 865573 865809 82 - . . scaffold1589 GLEAN mRNA 870971 871832 1 - . ID=CGI_10024130; scaffold1589 GLEAN promoter 871833 872832 1 - . ID=CGI_10024130; scaffold1589 TRF Tandem_Repeat 876063 876099 65 + . . scaffold1589 GLEAN mRNA 876164 888401 0.863209 - . ID=CGI_10024131; scaffold1589 WUBlastX LINE_CR1-L2 882015 882254 32 + . . scaffold1589 GLEAN promoter 888124 889123 1 + . ID=CGI_10024132; scaffold1589 GLEAN promoter 888402 889401 0.863209 - . ID=CGI_10024131; scaffold1589 GLEAN mRNA 889124 893865 1 + . ID=CGI_10024132; scaffold1590 GLEAN mRNA 3411 3725 1 - . ID=CGI_10005505; scaffold1590 GLEAN promoter 3726 4725 1 - . ID=CGI_10005505; scaffold1590 WUBlastX DNA_Crypton 9909 10280 209 - . . scaffold1590 TRF Tandem_Repeat 12286 12320 61 + . . scaffold1590 WUBlastX LTR_Gypsy 15525 15659 21 + . . scaffold1590 WUBlastX LTR_Gypsy 15550 15924 35 + . . scaffold1590 WUBlastX LTR_Gypsy 15634 16239 66 + . . scaffold1590 WUBlastX LTR_Gypsy 16135 16236 69 + . . scaffold1590 WUBlastX LTR_Gypsy 16242 17078 543 + . . scaffold1590 WUBlastX DNA_hAT 17204 17395 86 - . . scaffold1590 WUBlastX DNA_hAT-Tip100 17273 17422 24 - . . scaffold1590 WUBlastX DNA_hAT 17548 18111 263 - . . scaffold1590 WUBlastX DNA_hAT-Tip100 18210 18449 42 - . . scaffold1590 TRF Tandem_Repeat 18503 18567 76 + . . scaffold1590 TRF Tandem_Repeat 18512 18576 76 + . . scaffold1590 GLEAN promoter 29913 30912 0.776646 + . ID=CGI_10005506; scaffold1590 GLEAN mRNA 30913 31080 0.776646 + . ID=CGI_10005506; scaffold1590 WUBlastX LINE_RTE-X 36106 36330 65 + . . scaffold1590 GLEAN mRNA 37950 38879 1 - . ID=CGI_10005507; scaffold1590 GLEAN promoter 38880 39879 1 - . ID=CGI_10005507; scaffold1590 WUBlastX DNA_TcMar-Tc1 56210 56383 88 - . . scaffold1590 WUBlastX DNA_TcMar-Tc1 56210 56446 66 - . . scaffold1590 WUBlastX DNA_TcMar-Tc1 57046 57825 334 - . . scaffold1590 WUBlastX LTR_Gypsy 66799 67608 93 + . . scaffold1590 WUBlastX LTR_Gypsy 66940 67881 47 + . . scaffold1590 WUBlastX LTR_Gypsy 66952 67638 191 + . . scaffold1590 WUBlastX LTR_Gypsy 67807 67926 22 + . . scaffold1590 WUBlastX LTR_Gypsy 68039 68662 111 + . . scaffold1590 WUBlastX LTR_Gypsy 68162 68662 365 + . . scaffold1590 WUBlastX LTR_Gypsy 68258 68662 369 + . . scaffold1590 WUBlastX LTR_Gypsy 68668 70221 930 + . . scaffold1590 WUBlastX LTR_Gypsy 70212 70658 394 + . . scaffold1590 WUBlastX LTR_Copia 70416 70832 28 + . . scaffold1590 TRF Tandem_Repeat 76989 77019 55 + . . scaffold1590 GLEAN promoter 79565 80564 0.937854 + . ID=CGI_10005508; scaffold1590 GLEAN mRNA 80565 81097 0.937854 + . ID=CGI_10005508; scaffold1590 GLEAN promoter 94250 95249 0.651119 + . ID=CGI_10005509; scaffold1590 GLEAN mRNA 95250 96105 0.651119 + . ID=CGI_10005509; scaffold1590 TRF Tandem_Repeat 96872 97236 458 + . . scaffold1590 TRF Tandem_Repeat 109389 109588 258 + . . scaffold1590 GLEAN mRNA 110792 116679 0.632406 - . ID=CGI_10005510; scaffold1590 GLEAN promoter 116680 117679 0.632406 - . ID=CGI_10005510; scaffold1590 GLEAN mRNA 117504 127573 0.611115 - . ID=CGI_10005511; scaffold1590 WUBlastX LINE_Penelope 121787 122014 73 + . . scaffold1590 GLEAN promoter 127574 128573 0.611115 - . ID=CGI_10005511; scaffold1590 WUBlastX LINE_Penelope 128047 128274 44 + . . scaffold1591 GLEAN promoter 989 1988 0.999949 + . ID=CGI_10001761; scaffold1591 GLEAN mRNA 1989 11664 0.999949 + . ID=CGI_10001761; scaffold1591 GLEAN promoter 10817 11816 1 + . ID=CGI_10001762; scaffold1591 GLEAN mRNA 11817 12068 1 + . ID=CGI_10001762; scaffold1591 GLEAN mRNA 13700 28670 0.863733 - . ID=CGI_10001763; scaffold1591 GLEAN promoter 28671 29670 0.863733 - . ID=CGI_10001763; scaffold1592 TRF Tandem_Repeat 5208 5939 1054 + . . scaffold1592 TRF Tandem_Repeat 10916 10965 100 + . . scaffold1592 TRF Tandem_Repeat 12561 12607 94 + . . scaffold1592 GLEAN promoter 16048 17047 0.660889 + . ID=CGI_10006584; scaffold1592 GLEAN mRNA 17048 28772 0.660889 + . ID=CGI_10006584; scaffold1592 TRF Tandem_Repeat 17522 18012 684 + . . scaffold1592 TRF Tandem_Repeat 21434 21493 111 + . . scaffold1592 TRF Tandem_Repeat 22886 23188 245 + . . scaffold1592 TRF Tandem_Repeat 23434 23581 172 + . . scaffold1592 GLEAN mRNA 31242 37562 1 - . ID=CGI_10006585; scaffold1592 GLEAN promoter 37315 38314 0.999997 + . ID=CGI_10006586; scaffold1592 GLEAN promoter 37563 38562 1 - . ID=CGI_10006585; scaffold1592 GLEAN mRNA 38315 47322 0.999997 + . ID=CGI_10006586; scaffold1592 TRF Tandem_Repeat 40219 40260 84 + . . scaffold1592 TRF Tandem_Repeat 40519 40806 319 + . . scaffold1592 TRF Tandem_Repeat 46559 46595 74 + . . scaffold1592 GLEAN mRNA 49726 79362 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 51168 51323 258 + . . scaffold1592 TRF Tandem_Repeat 61057 61109 74 + . . scaffold1592 TRF Tandem_Repeat 65266 65324 118 + . . scaffold1592 TRF Tandem_Repeat 67711 67811 130 + . . scaffold1592 TRF Tandem_Repeat 69611 69647 65 + . . scaffold1592 TRF Tandem_Repeat 69721 69761 64 + . . scaffold1592 TRF Tandem_Repeat 75173 75236 128 + . . scaffold1592 TRF Tandem_Repeat 76138 76170 66 + . . scaffold1592 TRF Tandem_Repeat 77430 77458 58 + . . scaffold1592 TRF Tandem_Repeat 77456 77505 100 + . . scaffold1592 GLEAN promoter 79363 80362 0.774411 - . ID=CGI_10006587; scaffold1592 TRF Tandem_Repeat 80178 80252 51 + . . scaffold1592 TRF Tandem_Repeat 80178 80256 63 + . . scaffold1592 TRF Tandem_Repeat 81167 81218 104 + . . scaffold1592 TRF Tandem_Repeat 90004 90159 70 + . . scaffold1592 TRF Tandem_Repeat 90634 90670 74 + . . scaffold1592 WUBlastX DNA_TcMar-Tc1 92285 93280 483 + . . scaffold1592 WUBlastX DNA_hAT-Tip100 98243 99277 481 - . . scaffold1592 TRF Tandem_Repeat 102186 102290 60 + . . scaffold1592 TRF Tandem_Repeat 102220 102290 72 + . . scaffold1592 TRF Tandem_Repeat 103510 103602 87 + . . scaffold1592 TRF Tandem_Repeat 103510 103602 93 + . . scaffold1592 TRF Tandem_Repeat 103592 103638 58 + . . scaffold1592 GLEAN promoter 104660 105659 0.999999 + . ID=CGI_10006588; scaffold1592 GLEAN mRNA 105660 114168 0.999999 + . ID=CGI_10006588; scaffold1592 TRF Tandem_Repeat 113471 113682 222 + . . scaffold1592 TRF Tandem_Repeat 116589 116635 94 + . . scaffold1592 WUBlastX LINE_L1 117444 117593 22 + . . scaffold1592 WUBlastX LINE_RTE-BovB 117888 118118 86 + . . scaffold1592 WUBlastX LINE_RTE-BovB 117929 118390 129 + . . scaffold1592 WUBlastX LINE_RTE-BovB 118133 118399 191 + . . scaffold1592 WUBlastX LINE_RTE-BovB 118375 119589 1026 + . . scaffold1592 WUBlastX LINE_RTE-BovB 119493 119735 206 + . . scaffold1592 GLEAN promoter 120957 121956 0.636303 + . ID=CGI_10006589; scaffold1592 GLEAN mRNA 121957 124457 0.636303 + . ID=CGI_10006589; scaffold1592 TRF Tandem_Repeat 125426 126483 1176 + . . scaffold1592 TRF Tandem_Repeat 125426 126483 1026 + . . scaffold1592 GLEAN promoter 131440 132439 0.99814 + . ID=CGI_10006590; scaffold1592 GLEAN mRNA 132440 135218 0.99814 + . ID=CGI_10006590; scaffold1592 GLEAN mRNA 135764 141880 0.998897 - . ID=CGI_10006591; scaffold1592 GLEAN promoter 141881 142880 0.998897 - . ID=CGI_10006591; scaffold1592 GLEAN mRNA 145144 148584 1 - . ID=CGI_10006592; scaffold1592 TRF Tandem_Repeat 146612 148173 2040 + . . scaffold1592 TRF Tandem_Repeat 147027 148173 1814 + . . scaffold1592 GLEAN promoter 148585 149584 1 - . ID=CGI_10006592; scaffold1592 GLEAN mRNA 149588 153633 1 - . ID=CGI_10006593; scaffold1592 GLEAN promoter 153634 154633 1 - . ID=CGI_10006593; scaffold1592 GLEAN mRNA 154684 155043 0.999787 - . ID=CGI_10006594; scaffold1592 GLEAN promoter 155044 156043 0.999787 - . ID=CGI_10006594; scaffold1593 WUBlastX DNA_IS 22 1239 2000 - . . scaffold1593 WUBlastX DNA_Crypton 3853 4569 85 - . . scaffold1593 WUBlastX DNA_Crypton 3970 4764 49 - . . scaffold1593 WUBlastX LINE_L1-Tx1 9262 9678 40 - . . scaffold1593 WUBlastX LINE_L1 9686 9922 116 - . . scaffold1593 WUBlastX LINE_L1 9776 9949 76 - . . scaffold1593 WUBlastX LINE_L1-Tx1 9836 9970 23 - . . scaffold1593 WUBlastX LINE_L1 9978 10391 150 - . . scaffold1593 WUBlastX LINE_L1-Tx1 10340 10660 69 - . . scaffold1593 WUBlastX LINE_L1-Tx1 10424 10741 22 - . . scaffold1593 WUBlastX LINE_L1-Tx1 10734 11075 125 - . . scaffold1593 WUBlastX LINE_L1 11083 11148 35 - . . scaffold1593 GLEAN promoter 11087 12086 0.985796 + . ID=CGI_10002613; scaffold1593 GLEAN mRNA 12087 20284 0.985796 + . ID=CGI_10002613; scaffold1593 GLEAN mRNA 24023 27468 0.615405 - . ID=CGI_10002614; scaffold1593 GLEAN promoter 27469 28468 0.615405 - . ID=CGI_10002614; scaffold1593 WUBlastX LINE_Penelope 43249 44637 516 - . . scaffold1593 WUBlastX LINE_Penelope 44612 44851 107 - . . scaffold1593 WUBlastX LINE_Penelope 44928 45071 56 - . . scaffold1593 WUBlastX LINE_Penelope 44985 45110 26 - . . scaffold1593 WUBlastX LINE_Penelope 45094 45750 163 - . . scaffold1593 WUBlastX LINE_Penelope 45148 45627 212 - . . scaffold1593 GLEAN mRNA 47299 51410 0.997168 - . ID=CGI_10002615; scaffold1593 GLEAN promoter 51411 51753 0.997168 - . ID=CGI_10002615; scaffold1595 TRF Tandem_Repeat 1811 1835 50 + . . scaffold1595 TRF Tandem_Repeat 1833 1869 74 + . . scaffold1595 WUBlastX LTR_Gypsy 3298 3945 287 - . . scaffold1595 WUBlastX LTR_Gypsy 3938 4846 575 - . . scaffold1595 WUBlastX LTR_Gypsy 4848 5843 782 - . . scaffold1595 WUBlastX LINE_L2 10209 10745 197 - . . scaffold1595 WUBlastX LINE_CR1-L2 10756 11124 153 - . . scaffold1595 WUBlastX LINE_CR1-L2 10756 11064 165 - . . scaffold1595 WUBlastX LINE_L2 11731 12336 164 - . . scaffold1595 WUBlastX LINE_CR1-L2 11779 12291 285 - . . scaffold1595 WUBlastX LINE_L2 11818 12495 113 - . . scaffold1596 WUBlastX DNA_hAT-Ac 2596 3276 132 + . . scaffold1596 WUBlastX DNA_hAT-Ac 2856 3404 21 + . . scaffold1596 WUBlastX DNA_hAT-Ac 3518 3835 71 + . . scaffold1596 WUBlastX DNA_hAT-Ac 3557 3820 83 + . . scaffold1596 WUBlastX DNA_hAT-Ac 3689 3826 101 + . . scaffold1596 GLEAN promoter 4776 5775 0.997715 + . ID=CGI_10000647; scaffold1596 GLEAN mRNA 5776 6731 0.997715 + . ID=CGI_10000647; scaffold1596 WUBlastX DNA_Crypton 6552 7001 61 + . . scaffold1597 GLEAN mRNA 296 3638 1 - . ID=CGI_10011762; scaffold1597 WUBlastX DNA_hAT-Tip100 2304 3287 147 - . . scaffold1597 WUBlastX DNA_hAT-Tip100 3111 3440 151 - . . scaffold1597 WUBlastX DNA_hAT-Tip100 3153 3533 23 - . . scaffold1597 GLEAN promoter 3639 4638 1 - . ID=CGI_10011762; scaffold1597 GLEAN mRNA 6965 25801 0.650922 - . ID=CGI_10011763; scaffold1597 GLEAN promoter 20940 21939 0.999419 + . ID=CGI_10011764; scaffold1597 GLEAN mRNA 21940 26103 0.999419 + . ID=CGI_10011764; scaffold1597 TRF Tandem_Repeat 24208 24254 58 + . . scaffold1597 GLEAN promoter 25802 26801 0.650922 - . ID=CGI_10011763; scaffold1597 GLEAN mRNA 33826 36386 1 - . ID=CGI_10011765; scaffold1597 TRF Tandem_Repeat 34557 34739 303 + . . scaffold1597 GLEAN promoter 36387 37386 1 - . ID=CGI_10011765; scaffold1597 GLEAN mRNA 37265 40382 1 - . ID=CGI_10011766; scaffold1597 TRF Tandem_Repeat 37687 37786 96 + . . scaffold1597 GLEAN promoter 39503 40502 1 + . ID=CGI_10011767; scaffold1597 GLEAN promoter 40383 41382 1 - . ID=CGI_10011766; scaffold1597 GLEAN mRNA 40503 44220 1 + . ID=CGI_10011767; scaffold1597 TRF Tandem_Repeat 45916 46036 99 + . . scaffold1597 TRF Tandem_Repeat 46222 47014 1092 + . . scaffold1597 TRF Tandem_Repeat 47734 47963 108 + . . scaffold1597 TRF Tandem_Repeat 47805 47964 148 + . . scaffold1597 TRF Tandem_Repeat 59443 59469 54 + . . scaffold1597 TRF Tandem_Repeat 63221 63254 59 + . . scaffold1597 GLEAN promoter 63830 64829 0.575457 + . ID=CGI_10011768; scaffold1597 GLEAN mRNA 64830 66494 0.575457 + . ID=CGI_10011768; scaffold1597 TRF Tandem_Repeat 68589 68620 64 + . . scaffold1597 GLEAN mRNA 69157 83925 0.999715 - . ID=CGI_10011769; scaffold1597 WUBlastX LINE_RTE-X 72327 72794 112 + . . scaffold1597 TRF Tandem_Repeat 74552 74588 56 + . . scaffold1597 TRF Tandem_Repeat 77331 77550 305 + . . scaffold1597 GLEAN promoter 80608 81607 0.811719 + . ID=CGI_10011770; scaffold1597 TRF Tandem_Repeat 81124 81167 81 + . . scaffold1597 GLEAN mRNA 81608 96269 0.811719 + . ID=CGI_10011770; scaffold1597 GLEAN promoter 83926 84925 0.999715 - . ID=CGI_10011769; scaffold1597 TRF Tandem_Repeat 87586 87627 75 + . . scaffold1597 TRF Tandem_Repeat 93411 94032 632 + . . scaffold1597 TRF Tandem_Repeat 93684 93724 66 + . . scaffold1597 TRF Tandem_Repeat 100509 101640 1849 + . . scaffold1597 TRF Tandem_Repeat 101667 101722 76 + . . scaffold1597 TRF Tandem_Repeat 101671 101722 68 + . . scaffold1597 GLEAN mRNA 103203 119999 0.890291 - . ID=CGI_10011771; scaffold1597 TRF Tandem_Repeat 105410 106332 1393 + . . scaffold1597 TRF Tandem_Repeat 106663 106810 80 + . . scaffold1597 GLEAN promoter 120000 120999 0.890291 - . ID=CGI_10011771; scaffold1597 WUBlastX DNA_En-Spm 120319 120594 76 + . . scaffold1597 WUBlastX DNA_En-Spm 120385 121149 142 + . . scaffold1597 WUBlastX DNA_En-Spm 120634 121194 202 + . . scaffold1597 WUBlastX DNA_En-Spm 121176 121337 33 + . . scaffold1597 WUBlastX DNA_En-Spm 121281 121475 39 + . . scaffold1597 WUBlastX LINE_L1-Tx1 139743 139913 79 - . . scaffold1597 GLEAN mRNA 140908 141102 0.624266 - . ID=CGI_10011772; scaffold1597 GLEAN promoter 141103 142102 0.624266 - . ID=CGI_10011772; scaffold1597 GLEAN promoter 151318 152317 0.999931 + . ID=CGI_10011773; scaffold1597 GLEAN mRNA 152318 155930 0.999931 + . ID=CGI_10011773; scaffold1597 TRF Tandem_Repeat 157878 157918 57 + . . scaffold1597 TRF Tandem_Repeat 169726 169773 96 + . . scaffold1597 TRF Tandem_Repeat 174303 174989 467 + . . scaffold1597 TRF Tandem_Repeat 174303 174989 551 + . . scaffold1597 WUBlastX LINE_L1-Tx1 186665 188218 546 - . . scaffold1597 WUBlastX RC_Helitron 188656 188883 48 + . . scaffold1597 WUBlastX RC_Helitron 188713 188877 101 + . . scaffold1597 WUBlastX RC_Helitron 188867 189400 229 + . . scaffold1597 WUBlastX RC_Helitron 188924 189358 234 + . . scaffold1597 GLEAN mRNA 192027 197230 0.999156 - . ID=CGI_10011774; scaffold1597 GLEAN promoter 197231 198230 0.999156 - . ID=CGI_10011774; scaffold1597 WUBlastX LINE_L2 198843 199358 100 - . . scaffold1597 WUBlastX LINE_CR1-L2 198963 199310 117 - . . scaffold1597 WUBlastX LINE_CR1-L2 199331 199378 40 - . . scaffold1597 WUBlastX LINE_L2 199384 199512 28 - . . scaffold1597 TRF Tandem_Repeat 204029 204078 55 + . . scaffold1597 TRF Tandem_Repeat 204201 204536 672 + . . scaffold1597 TRF Tandem_Repeat 205927 205996 140 + . . scaffold1597 TRF Tandem_Repeat 210095 210249 283 + . . scaffold1597 GLEAN mRNA 221540 230074 0.633091 - . ID=CGI_10011775; scaffold1597 GLEAN promoter 230075 231074 0.633091 - . ID=CGI_10011775; scaffold1597 GLEAN promoter 245137 246136 0.994676 + . ID=CGI_10011776; scaffold1597 GLEAN mRNA 246137 259619 0.994676 + . ID=CGI_10011776; scaffold1597 TRF Tandem_Repeat 250279 250319 64 + . . scaffold1597 TRF Tandem_Repeat 250802 250870 138 + . . scaffold1597 TRF Tandem_Repeat 253133 253180 96 + . . scaffold1597 TRF Tandem_Repeat 256156 256218 126 + . . scaffold1597 TRF Tandem_Repeat 257238 257288 102 + . . scaffold1597 TRF Tandem_Repeat 267502 267541 71 + . . scaffold1597 GLEAN mRNA 272076 272336 0.999372 - . ID=CGI_10011777; scaffold1597 GLEAN promoter 272337 273336 0.999372 - . ID=CGI_10011777; scaffold1597 GLEAN mRNA 272342 272548 0.998504 - . ID=CGI_10011778; scaffold1597 GLEAN promoter 272549 273548 0.998504 - . ID=CGI_10011778; scaffold1597 GLEAN promoter 272594 273593 1 + . ID=CGI_10011779; scaffold1597 GLEAN mRNA 273594 274226 1 + . ID=CGI_10011779; scaffold1597 WUBlastX LINE_RTE-X 284743 284958 57 - . . scaffold1597 WUBlastX LINE_RTE-X 284803 284961 58 - . . scaffold1597 TRF Tandem_Repeat 295637 295911 473 + . . scaffold1597 TRF Tandem_Repeat 298935 298969 70 + . . scaffold1598 GLEAN mRNA 4425 7752 1 - . ID=CGI_10003268; scaffold1598 GLEAN promoter 7043 8042 1 + . ID=CGI_10003269; scaffold1598 GLEAN promoter 7753 8752 1 - . ID=CGI_10003268; scaffold1598 GLEAN mRNA 8043 14704 1 + . ID=CGI_10003269; scaffold1598 GLEAN promoter 17526 18525 0.999351 + . ID=CGI_10003270; scaffold1598 GLEAN mRNA 18526 29890 0.999351 + . ID=CGI_10003270; scaffold1598 GLEAN mRNA 29601 41899 0.494296 - . ID=CGI_10003271; scaffold1598 GLEAN promoter 41900 42899 0.494296 - . ID=CGI_10003271; scaffold1598 GLEAN mRNA 47032 47502 0.999984 - . ID=CGI_10003272; scaffold1598 GLEAN promoter 47503 48502 0.999984 - . ID=CGI_10003272; scaffold1598 GLEAN mRNA 52803 62879 0.999949 - . ID=CGI_10003273; scaffold1598 GLEAN promoter 62880 63879 0.999949 - . ID=CGI_10003273; scaffold1599 GLEAN promoter 4974 5973 0.69854 + . ID=CGI_10027125; scaffold1599 GLEAN mRNA 5974 11404 0.69854 + . ID=CGI_10027125; scaffold1599 TRF Tandem_Repeat 6992 7427 276 + . . scaffold1599 TRF Tandem_Repeat 11417 11497 135 + . . scaffold1599 GLEAN mRNA 12750 13743 1 - . ID=CGI_10027126; scaffold1599 TRF Tandem_Repeat 13201 13247 94 + . . scaffold1599 TRF Tandem_Repeat 13245 13270 52 + . . scaffold1599 GLEAN promoter 13744 14743 1 - . ID=CGI_10027126; scaffold1599 GLEAN mRNA 13872 20605 1 - . ID=CGI_10027127; scaffold1599 TRF Tandem_Repeat 16935 17090 269 + . . scaffold1599 GLEAN promoter 20041 21040 0.591911 + . ID=CGI_10027128; scaffold1599 GLEAN promoter 20606 21605 1 - . ID=CGI_10027127; scaffold1599 GLEAN mRNA 21041 25059 0.591911 + . ID=CGI_10027128; scaffold1599 GLEAN mRNA 28148 40046 0.999611 - . ID=CGI_10027129; scaffold1599 GLEAN promoter 40047 41046 0.999611 - . ID=CGI_10027129; scaffold1599 GLEAN promoter 42377 43376 0.92776 + . ID=CGI_10027130; scaffold1599 GLEAN mRNA 43377 79233 0.92776 + . ID=CGI_10027130; scaffold1599 TRF Tandem_Repeat 46806 46866 122 + . . scaffold1599 TRF Tandem_Repeat 75514 75802 213 + . . scaffold1599 TRF Tandem_Repeat 75531 75792 333 + . . scaffold1599 WUBlastX LINE_RTE-X 81521 81802 72 + . . scaffold1599 TRF Tandem_Repeat 86961 87003 77 + . . scaffold1599 TRF Tandem_Repeat 97085 97829 1163 + . . scaffold1599 TRF Tandem_Repeat 98042 98079 58 + . . scaffold1599 GLEAN mRNA 99063 100769 0.989946 - . ID=CGI_10027131; scaffold1599 GLEAN promoter 100770 101769 0.989946 - . ID=CGI_10027131; scaffold1599 TRF Tandem_Repeat 102025 102075 102 + . . scaffold1599 TRF Tandem_Repeat 103416 103491 152 + . . scaffold1599 GLEAN promoter 105094 106093 0.889395 + . ID=CGI_10027132; scaffold1599 GLEAN mRNA 106094 119733 0.889395 + . ID=CGI_10027132; scaffold1599 TRF Tandem_Repeat 106177 106204 56 + . . scaffold1599 TRF Tandem_Repeat 117126 117166 82 + . . scaffold1599 GLEAN mRNA 123071 130934 0.448272 - . ID=CGI_10027133; scaffold1599 TRF Tandem_Repeat 123195 124139 1487 + . . scaffold1599 TRF Tandem_Repeat 126822 126959 116 + . . scaffold1599 GLEAN promoter 130935 131934 0.448272 - . ID=CGI_10027133; scaffold1599 TRF Tandem_Repeat 133260 133303 88 + . . scaffold1599 TRF Tandem_Repeat 133303 133336 50 + . . scaffold1599 TRF Tandem_Repeat 133440 133521 164 + . . scaffold1599 GLEAN mRNA 135083 150409 0.999319 - . ID=CGI_10027134; scaffold1599 TRF Tandem_Repeat 144207 145980 1791 + . . scaffold1599 TRF Tandem_Repeat 146612 146654 77 + . . scaffold1599 TRF Tandem_Repeat 147974 148031 116 + . . scaffold1599 GLEAN promoter 150410 151409 0.999319 - . ID=CGI_10027134; scaffold1599 TRF Tandem_Repeat 151898 152048 158 + . . scaffold1599 TRF Tandem_Repeat 152142 152235 82 + . . scaffold1599 GLEAN mRNA 153631 176831 1 - . ID=CGI_10027135; scaffold1599 TRF Tandem_Repeat 171124 171163 80 + . . scaffold1599 GLEAN promoter 172047 173046 0.999235 + . ID=CGI_10027136; scaffold1599 GLEAN mRNA 173047 181373 0.999235 + . ID=CGI_10027136; scaffold1599 GLEAN promoter 176832 177831 1 - . ID=CGI_10027135; scaffold1599 GLEAN mRNA 183829 192621 0.999973 - . ID=CGI_10027137; scaffold1599 TRF Tandem_Repeat 189363 189387 50 + . . scaffold1599 GLEAN promoter 192452 193451 0.999493 + . ID=CGI_10027138; scaffold1599 GLEAN promoter 192622 193621 0.999973 - . ID=CGI_10027137; scaffold1599 GLEAN mRNA 193452 195562 0.999493 + . ID=CGI_10027138; scaffold1599 GLEAN promoter 200256 201255 1 + . ID=CGI_10027139; scaffold1599 GLEAN promoter 200829 201828 0.995867 + . ID=CGI_10027140; scaffold1599 GLEAN mRNA 201256 201510 1 + . ID=CGI_10027139; scaffold1599 GLEAN mRNA 201829 203720 0.995867 + . ID=CGI_10027140; scaffold1599 GLEAN mRNA 204689 219809 0.999676 - . ID=CGI_10027141; scaffold1599 WUBlastX DNA_Sola 208582 208713 61 + . . scaffold1599 WUBlastX DNA_Sola 208582 208692 67 + . . scaffold1599 WUBlastX DNA_Sola 208848 208913 21 + . . scaffold1599 TRF Tandem_Repeat 213608 213652 90 + . . scaffold1599 WUBlastX LTR_Gypsy 214866 215900 160 + . . scaffold1599 WUBlastX LTR_Gypsy 214887 215636 196 + . . scaffold1599 GLEAN promoter 219810 220809 0.999676 - . ID=CGI_10027141; scaffold1599 GLEAN mRNA 223417 231880 1 - . ID=CGI_10027142; scaffold1599 TRF Tandem_Repeat 228793 228833 55 + . . scaffold1599 TRF Tandem_Repeat 230771 230810 71 + . . scaffold1599 GLEAN promoter 231881 232880 1 - . ID=CGI_10027142; scaffold1599 WUBlastX LINE_L1-Tx1 236058 236471 35 + . . scaffold1599 WUBlastX LINE_L1 236229 236471 61 + . . scaffold1599 GLEAN mRNA 238916 249872 0.993706 - . ID=CGI_10027143; scaffold1599 WUBlastX LTR_Gypsy 239899 240027 22 - . . scaffold1599 WUBlastX LTR_Gypsy 239923 240117 66 - . . scaffold1599 WUBlastX LTR_Gypsy 239974 240513 172 - . . scaffold1599 WUBlastX LTR_Gypsy 240492 240887 102 - . . scaffold1599 WUBlastX LTR_Gypsy 240504 240791 137 - . . scaffold1599 WUBlastX LTR_Gypsy 240516 240743 138 - . . scaffold1599 TRF Tandem_Repeat 241792 241843 104 + . . scaffold1599 WUBlastX LINE_Penelope 246074 246589 57 - . . scaffold1599 WUBlastX LINE_Penelope 246612 246650 21 - . . scaffold1599 GLEAN promoter 249873 250872 0.993706 - . ID=CGI_10027143; scaffold1599 TRF Tandem_Repeat 250630 250736 142 + . . scaffold1599 TRF Tandem_Repeat 252335 252480 94 + . . scaffold1599 TRF Tandem_Repeat 252390 252480 137 + . . scaffold1599 TRF Tandem_Repeat 252667 252713 94 + . . scaffold1599 TRF Tandem_Repeat 253146 253187 84 + . . scaffold1599 TRF Tandem_Repeat 258536 258575 80 + . . scaffold1599 TRF Tandem_Repeat 265700 265753 108 + . . scaffold1599 TRF Tandem_Repeat 269225 269265 73 + . . scaffold1599 WUBlastX LINE_L2 273422 273793 72 - . . scaffold1599 WUBlastX LINE_CR1-L2 273730 274281 166 - . . scaffold1599 WUBlastX LINE_CR1-L2 273817 274281 211 - . . scaffold1599 WUBlastX LINE_L2 274284 275261 280 - . . scaffold1599 WUBlastX LINE_CR1-L2 274287 275066 515 - . . scaffold1599 WUBlastX LINE_CR1 275047 275301 63 - . . scaffold1599 GLEAN mRNA 291871 301066 0.499386 - . ID=CGI_10027144; scaffold1599 GLEAN promoter 301067 302066 0.499386 - . ID=CGI_10027144; scaffold1599 GLEAN mRNA 301335 304486 0.702157 - . ID=CGI_10027145; scaffold1599 GLEAN promoter 304487 305486 0.702157 - . ID=CGI_10027145; scaffold1599 TRF Tandem_Repeat 305048 305217 250 + . . scaffold1599 TRF Tandem_Repeat 308091 308328 368 + . . scaffold1599 TRF Tandem_Repeat 326800 326969 322 + . . scaffold1599 GLEAN promoter 347384 348383 0.135254 + . ID=CGI_10027146; scaffold1599 GLEAN mRNA 348384 369888 0.135254 + . ID=CGI_10027146; scaffold1599 TRF Tandem_Repeat 366700 366741 84 + . . scaffold1599 TRF Tandem_Repeat 384790 385136 534 + . . scaffold1599 TRF Tandem_Repeat 384807 385094 285 + . . scaffold1599 TRF Tandem_Repeat 385580 385714 216 + . . scaffold1599 TRF Tandem_Repeat 391090 391133 54 + . . scaffold1599 TRF Tandem_Repeat 393263 393290 56 + . . scaffold1599 WUBlastX LINE_CR1 397203 397370 45 - . . scaffold1599 TRF Tandem_Repeat 399325 399372 96 + . . scaffold1599 TRF Tandem_Repeat 409415 409597 92 + . . scaffold1599 TRF Tandem_Repeat 409430 409528 58 + . . scaffold1599 TRF Tandem_Repeat 429509 429552 79 + . . scaffold1599 TRF Tandem_Repeat 431908 432030 237 + . . scaffold1599 TRF Tandem_Repeat 431912 432046 180 + . . scaffold1599 WUBlastX DNA_TcMar-Tc1 434260 434469 50 + . . scaffold1599 WUBlastX LINE_CR1 435336 435473 20 + . . scaffold1599 WUBlastX LINE_CR1 435525 437027 244 + . . scaffold1599 WUBlastX LINE_CR1-L2 435819 437540 958 + . . scaffold1599 TRF Tandem_Repeat 438310 438484 296 + . . scaffold1599 TRF Tandem_Repeat 439771 439822 68 + . . scaffold1599 TRF Tandem_Repeat 439771 439826 76 + . . scaffold1599 TRF Tandem_Repeat 439853 440976 1686 + . . scaffold1599 TRF Tandem_Repeat 450451 450485 70 + . . scaffold1599 TRF Tandem_Repeat 461716 461764 98 + . . scaffold1599 TRF Tandem_Repeat 463833 463884 104 + . . scaffold1599 WUBlastX LINE_RTE-X 477111 477287 37 - . . scaffold1599 WUBlastX LINE_RTE-X 477401 477487 20 - . . scaffold1599 TRF Tandem_Repeat 477647 477690 88 + . . scaffold1599 GLEAN promoter 482303 483302 0.998077 + . ID=CGI_10027147; scaffold1599 GLEAN mRNA 483303 483890 0.998077 + . ID=CGI_10027147; scaffold1599 TRF Tandem_Repeat 486578 486625 96 + . . scaffold1599 TRF Tandem_Repeat 488571 488617 85 + . . scaffold1599 TRF Tandem_Repeat 502194 502309 124 + . . scaffold1599 TRF Tandem_Repeat 502390 502480 112 + . . scaffold1599 TRF Tandem_Repeat 502708 502759 104 + . . scaffold1599 GLEAN promoter 503163 504162 0.999676 + . ID=CGI_10027148; scaffold1599 GLEAN mRNA 504163 508533 0.999676 + . ID=CGI_10027148; scaffold1599 TRF Tandem_Repeat 512869 512934 132 + . . scaffold1599 TRF Tandem_Repeat 513893 514029 76 + . . scaffold1599 TRF Tandem_Repeat 513913 514049 76 + . . scaffold1599 TRF Tandem_Repeat 514351 514391 82 + . . scaffold1599 GLEAN mRNA 519334 520888 0.979999 - . ID=CGI_10027149; scaffold1599 GLEAN promoter 520458 521457 0.613088 + . ID=CGI_10027150; scaffold1599 GLEAN promoter 520889 521888 0.979999 - . ID=CGI_10027149; scaffold1599 GLEAN mRNA 521458 521658 0.613088 + . ID=CGI_10027150; scaffold1599 WUBlastX LINE_R2-Hero 522207 522413 56 - . . scaffold1599 WUBlastX LINE_R2-Hero 522216 522347 61 - . . scaffold1599 TRF Tandem_Repeat 524726 524787 51 + . . scaffold1599 TRF Tandem_Repeat 529884 529921 76 + . . scaffold1599 GLEAN promoter 540949 541948 0.648153 + . ID=CGI_10027151; scaffold1599 GLEAN mRNA 541949 554448 0.648153 + . ID=CGI_10027151; scaffold1599 WUBlastX LINE_RTE-X 543062 543208 34 + . . scaffold1599 TRF Tandem_Repeat 543392 543442 102 + . . scaffold1599 WUBlastX LINE_L1 546942 547148 30 + . . scaffold1599 WUBlastX LINE_L1-Tx1 546981 547286 31 + . . scaffold1599 WUBlastX LINE_L1-Tx1 546984 547175 69 + . . scaffold1599 GLEAN promoter 553525 554524 0.924419 + . ID=CGI_10027152; scaffold1599 GLEAN mRNA 554525 590190 0.924419 + . ID=CGI_10027152; scaffold1599 WUBlastX DNA_IS4EU 556940 557020 43 + . . scaffold1599 WUBlastX DNA_IS4EU 558205 558291 39 + . . scaffold1599 WUBlastX DNA_IS4EU 558411 558614 83 + . . scaffold1599 WUBlastX DNA_IS4EU 559400 560143 343 - . . scaffold1599 WUBlastX LINE_L1-Tx1 590346 591305 265 + . . scaffold1599 GLEAN promoter 591729 592728 0.996798 + . ID=CGI_10027153; scaffold1599 WUBlastX LINE_CR1 591994 592710 193 + . . scaffold1599 GLEAN mRNA 592729 593313 0.996798 + . ID=CGI_10027153; scaffold1599 WUBlastX LINE_L1-Tx1 593469 594590 348 + . . scaffold1599 WUBlastX LINE_L1 594799 595017 65 + . . scaffold1599 WUBlastX LINE_L1 594826 595146 27 + . . scaffold1599 WUBlastX LINE_L1-Tx1 594826 595011 85 + . . scaffold1599 WUBlastX LINE_L1-Tx1 596101 596391 31 + . . scaffold1599 WUBlastX LINE_L1-Tx1 596170 596391 50 + . . scaffold1599 WUBlastX LINE_L1 596224 596421 30 + . . scaffold1599 WUBlastX LINE_L1-Tx1 596424 597062 163 + . . scaffold1599 WUBlastX LINE_L1 596919 597092 28 + . . scaffold1599 WUBlastX LINE_L1-Tx1 597038 597124 20 + . . scaffold1599 WUBlastX LINE_L1-Tx1 597127 598479 368 + . . scaffold1599 WUBlastX LINE_L1-Tx1 598473 598544 36 + . . scaffold1599 WUBlastX LINE_L1-Tx1 598500 598982 84 + . . scaffold1599 TRF Tandem_Repeat 612194 612228 70 + . . scaffold1599 GLEAN promoter 612504 613503 0.579802 + . ID=CGI_10027154; scaffold1599 GLEAN mRNA 613504 641190 0.579802 + . ID=CGI_10027154; scaffold1599 WUBlastX LINE_Penelope 631116 631265 56 + . . scaffold1599 TRF Tandem_Repeat 642068 642107 62 + . . scaffold1599 TRF Tandem_Repeat 651105 651131 54 + . . scaffold1599 TRF Tandem_Repeat 654880 654912 66 + . . scaffold1599 GLEAN mRNA 676136 688286 0.501311 - . ID=CGI_10027155; scaffold1599 WUBlastX LTR_Gypsy-Cigr 676605 677252 133 - . . scaffold1599 WUBlastX LTR_Gypsy 677122 678039 438 - . . scaffold1599 WUBlastX LTR_Gypsy 677263 678168 689 - . . scaffold1599 WUBlastX LTR_Gypsy 678194 679579 939 - . . scaffold1599 WUBlastX LTR_Gypsy 678293 679456 1110 - . . scaffold1599 WUBlastX LINE_CR1-L2 680040 680354 56 + . . scaffold1599 WUBlastX LINE_L2 680142 680354 69 + . . scaffold1599 GLEAN promoter 688287 689286 0.501311 - . ID=CGI_10027155; scaffold1599 GLEAN mRNA 688624 688827 1 - . ID=CGI_10027156; scaffold1599 GLEAN promoter 688828 689827 1 - . ID=CGI_10027156; scaffold1599 GLEAN mRNA 689539 697404 0.999992 - . ID=CGI_10027157; scaffold1599 GLEAN promoter 697405 698404 0.999992 - . ID=CGI_10027157; scaffold1599 TRF Tandem_Repeat 701231 701264 68 + . . scaffold1599 GLEAN promoter 701765 702764 0.55839 + . ID=CGI_10027158; scaffold1599 GLEAN promoter 702042 703041 0.999993 + . ID=CGI_10027159; scaffold1599 GLEAN mRNA 702765 702920 0.55839 + . ID=CGI_10027158; scaffold1599 GLEAN mRNA 703042 704064 0.999993 + . ID=CGI_10027159; scaffold1599 GLEAN promoter 705385 706384 0.544682 + . ID=CGI_10027160; scaffold1599 GLEAN mRNA 706385 710058 0.544682 + . ID=CGI_10027160; scaffold1599 WUBlastX LINE_RTE-X 710903 711604 137 - . . scaffold1599 WUBlastX LINE_RTE-X 712105 712254 43 - . . scaffold1599 TRF Tandem_Repeat 713520 713555 63 + . . scaffold1599 WUBlastX DNA_TcMar-Marin 725930 726583 196 + . . scaffold1599 WUBlastX DNA_TcMar-Marin 726724 727026 118 + . . scaffold1599 WUBlastX DNA_TcMar-Marin 726763 727017 149 + . . scaffold1599 WUBlastX DNA_TcMar-Marin 727475 727645 56 + . . scaffold1599 WUBlastX LINE_L2 742365 742838 25 + . . scaffold1599 WUBlastX LINE_CR1-L2 742835 743032 22 + . . scaffold1599 TRF Tandem_Repeat 747378 747412 70 + . . scaffold1599 GLEAN promoter 747973 748972 1 + . ID=CGI_10027161; scaffold1599 GLEAN mRNA 748973 750826 1 + . ID=CGI_10027161; scaffold1599 WUBlastX LTR_Ngaro 763336 763836 21 - . . scaffold1599 WUBlastX LTR_Ngaro 763399 763746 24 - . . scaffold1599 WUBlastX LTR_Ngaro 767111 767392 24 - . . scaffold1599 WUBlastX LTR_Ngaro 767232 767591 44 - . . scaffold1599 WUBlastX LTR_Ngaro 767400 768227 84 - . . scaffold1599 WUBlastX LTR_Ngaro 767403 768104 111 - . . scaffold1599 WUBlastX LTR_Ngaro 767559 768089 118 - . . scaffold1599 WUBlastX LTR_Ngaro 767748 768065 156 - . . scaffold1599 WUBlastX LTR_Ngaro 768444 768593 73 - . . scaffold1599 WUBlastX DNA_IS4EU 768831 768959 31 + . . scaffold1599 WUBlastX DNA_IS4EU 769587 769793 29 + . . scaffold1599 TRF Tandem_Repeat 770449 770515 89 + . . scaffold1599 WUBlastX DNA_IS4EU 772859 773410 226 + . . scaffold1599 WUBlastX DNA_IS4EU 773748 774002 92 - . . scaffold1599 WUBlastX DNA_IS4EU 775254 775679 85 - . . scaffold1599 WUBlastX DNA_IS4EU 775461 776111 128 - . . scaffold1599 GLEAN promoter 784004 785003 0.999981 + . ID=CGI_10027162; scaffold1599 GLEAN mRNA 785004 785618 0.999981 + . ID=CGI_10027162; scaffold1599 WUBlastX DNA_TcMar-Tc1 786582 786788 96 - . . scaffold1599 WUBlastX DNA_TcMar-Tc1 786582 786884 30 - . . scaffold1599 WUBlastX DNA_TcMar-Tc1 786702 786836 46 - . . scaffold1599 WUBlastX DNA_TcMar-Tc1 787095 787889 137 - . . scaffold1599 TRF Tandem_Repeat 789293 789346 81 + . . scaffold1599 TRF Tandem_Repeat 791469 791532 128 + . . scaffold1599 TRF Tandem_Repeat 794822 794885 128 + . . scaffold1599 TRF Tandem_Repeat 795048 795118 142 + . . scaffold1599 TRF Tandem_Repeat 800913 800961 71 + . . scaffold1599 TRF Tandem_Repeat 800916 800961 56 + . . scaffold1599 WUBlastX LINE_L1-Tx1 803015 804145 214 - . . scaffold1599 WUBlastX LINE_L1-Tx1 804094 804414 130 - . . scaffold1599 WUBlastX LINE_L1-Tx1 806881 807672 566 - . . scaffold1599 WUBlastX LINE_L1-Tx1 807659 808117 225 - . . scaffold1599 WUBlastX LINE_L1-Tx1 808141 809121 582 - . . scaffold1599 WUBlastX LINE_L1 809433 809891 67 - . . scaffold1599 WUBlastX LINE_CR1-L2 809517 809882 100 - . . scaffold1599 WUBlastX LINE_L1 809652 809927 100 - . . scaffold1599 WUBlastX LINE_RTE-X 811103 811708 157 + . . scaffold1599 WUBlastX LINE_RTE-X 811600 812007 26 + . . scaffold1599 WUBlastX LINE_RTE-X 811798 812073 32 + . . scaffold1599 WUBlastX LINE_RTE-X 811840 812007 88 + . . scaffold1599 WUBlastX LINE_RTE-X 811846 812067 43 + . . scaffold1599 TRF Tandem_Repeat 827299 827347 98 + . . scaffold1599 WUBlastX DNA_IS4EU 851645 851911 68 + . . scaffold1599 WUBlastX DNA_IS4EU 851863 852171 92 + . . scaffold1599 WUBlastX DNA_IS4EU 851929 852180 147 + . . scaffold1599 WUBlastX DNA_IS4EU 853282 853659 110 + . . scaffold1599 WUBlastX DNA_Kolobok-IS4 853435 853725 176 + . . scaffold1599 WUBlastX DNA_IS4EU 854621 855223 74 - . . scaffold1599 WUBlastX DNA_IS4EU 854627 855088 160 - . . scaffold1599 GLEAN promoter 861379 862378 0.994461 + . ID=CGI_10027163; scaffold1599 GLEAN mRNA 862379 863869 0.994461 + . ID=CGI_10027163; scaffold1599 TRF Tandem_Repeat 868935 869007 137 + . . scaffold1599 TRF Tandem_Repeat 885966 885999 68 + . . scaffold1599 GLEAN mRNA 892594 914150 0.944926 - . ID=CGI_10027165; scaffold1599 TRF Tandem_Repeat 900919 900964 83 + . . scaffold1599 TRF Tandem_Repeat 913095 913182 176 + . . scaffold1599 GLEAN promoter 914151 915150 0.944926 - . ID=CGI_10027165; scaffold1599 GLEAN mRNA 914603 921536 0.945682 - . ID=CGI_10027166; scaffold1599 TRF Tandem_Repeat 917598 917638 82 + . . scaffold1599 TRF Tandem_Repeat 918019 918052 68 + . . scaffold1599 GLEAN promoter 921537 922536 0.945682 - . ID=CGI_10027166; scaffold1599 GLEAN mRNA 925764 929225 0.884536 - . ID=CGI_10027167; scaffold1599 TRF Tandem_Repeat 928135 928405 260 + . . scaffold1599 GLEAN promoter 929226 930225 0.884536 - . ID=CGI_10027167; scaffold1599 GLEAN mRNA 931839 933778 0.999676 - . ID=CGI_10027168; scaffold1599 GLEAN promoter 933779 934778 0.999676 - . ID=CGI_10027168; scaffold1599 GLEAN mRNA 934698 937430 0.99046 - . ID=CGI_10027169; scaffold1599 GLEAN promoter 937431 938430 0.99046 - . ID=CGI_10027169; scaffold1599 TRF Tandem_Repeat 937879 937927 98 + . . scaffold1599 WUBlastX LINE_L2 943732 944652 489 - . . scaffold1599 WUBlastX LINE_CR1-L2 944466 945749 561 - . . scaffold1599 WUBlastX LINE_L2 944652 945716 705 - . . scaffold1599 TRF Tandem_Repeat 946998 947239 226 + . . scaffold1599 TRF Tandem_Repeat 946998 947239 233 + . . scaffold1599 TRF Tandem_Repeat 948049 948204 112 + . . scaffold1599 WUBlastX LINE_RTE-X 949175 949480 46 - . . scaffold1599 TRF Tandem_Repeat 951680 951735 112 + . . scaffold1599 WUBlastX LTR_Gypsy 955432 956025 143 - . . scaffold1599 WUBlastX LTR_Gypsy-Cigr 955531 956034 343 - . . scaffold1599 TRF Tandem_Repeat 965344 965566 175 + . . scaffold1599 WUBlastX LINE_RTE-X 966144 966272 24 - . . scaffold1599 WUBlastX LINE_RTE-X 966640 966861 26 - . . scaffold1599 GLEAN mRNA 971141 983893 0.884901 - . ID=CGI_10027170; scaffold1599 TRF Tandem_Repeat 973013 973063 52 + . . scaffold1599 TRF Tandem_Repeat 973022 973065 56 + . . scaffold1599 GLEAN promoter 983894 984893 0.884901 - . ID=CGI_10027170; scaffold1599 TRF Tandem_Repeat 988223 988332 68 + . . scaffold1599 GLEAN promoter 1000768 1001767 0.933427 + . ID=CGI_10027171; scaffold1599 GLEAN mRNA 1001768 1041481 0.933427 + . ID=CGI_10027171; scaffold1599 TRF Tandem_Repeat 1002323 1002474 164 + . . scaffold1599 GLEAN promoter 1043222 1044221 1 + . ID=CGI_10027172; scaffold1599 GLEAN mRNA 1044222 1058611 1 + . ID=CGI_10027172; scaffold1599 TRF Tandem_Repeat 1053869 1054715 1299 + . . scaffold1599 TRF Tandem_Repeat 1060872 1060936 130 + . . scaffold1599 GLEAN promoter 1061989 1062988 0.999999 + . ID=CGI_10027173; scaffold1599 GLEAN mRNA 1062989 1067852 0.999999 + . ID=CGI_10027173; scaffold1599 TRF Tandem_Repeat 1063626 1063686 122 + . . scaffold1599 TRF Tandem_Repeat 1067370 1067539 164 + . . scaffold1599 GLEAN promoter 1068473 1069472 1 + . ID=CGI_10027174; scaffold1599 TRF Tandem_Repeat 1068508 1068722 191 + . . scaffold1599 GLEAN mRNA 1069473 1070805 1 + . ID=CGI_10027174; scaffold1599 GLEAN promoter 1072165 1073164 0.778902 + . ID=CGI_10027175; scaffold1599 GLEAN mRNA 1073165 1075682 0.778902 + . ID=CGI_10027175; scaffold1599 GLEAN promoter 1075101 1076100 0.931132 + . ID=CGI_10027176; scaffold1599 GLEAN mRNA 1076101 1094945 0.931132 + . ID=CGI_10027176; scaffold1599 TRF Tandem_Repeat 1080119 1080265 68 + . . scaffold1599 TRF Tandem_Repeat 1080141 1080259 61 + . . scaffold1599 TRF Tandem_Repeat 1080178 1080303 94 + . . scaffold1599 TRF Tandem_Repeat 1080329 1080384 55 + . . scaffold1599 TRF Tandem_Repeat 1086445 1086561 65 + . . scaffold1599 TRF Tandem_Repeat 1086445 1086561 73 + . . scaffold1599 TRF Tandem_Repeat 1086446 1086559 126 + . . scaffold1599 TRF Tandem_Repeat 1092233 1094306 2416 + . . scaffold1599 GLEAN mRNA 1095265 1101961 0.999674 - . ID=CGI_10027177; scaffold1599 TRF Tandem_Repeat 1096786 1096870 134 + . . scaffold1599 GLEAN promoter 1101962 1102961 0.999674 - . ID=CGI_10027177; scaffold1599 GLEAN promoter 1102422 1103421 1 + . ID=CGI_10027178; scaffold1599 GLEAN mRNA 1103422 1106993 1 + . ID=CGI_10027178; scaffold1599 GLEAN mRNA 1109764 1113050 1 - . ID=CGI_10027179; scaffold1599 GLEAN promoter 1113051 1114050 1 - . ID=CGI_10027179; scaffold1599 GLEAN promoter 1113520 1114519 0.902853 + . ID=CGI_10027180; scaffold1599 GLEAN mRNA 1114520 1120307 0.902853 + . ID=CGI_10027180; scaffold1599 TRF Tandem_Repeat 1115130 1115171 84 + . . scaffold1599 TRF Tandem_Repeat 1119341 1119372 64 + . . scaffold1599 GLEAN promoter 1121623 1122622 0.9995 + . ID=CGI_10027181; scaffold1599 GLEAN mRNA 1122623 1125178 0.9995 + . ID=CGI_10027181; scaffold1599 WUBlastX LINE_Penelope 1134889 1135545 361 + . . scaffold1599 WUBlastX LINE_Penelope 1135563 1136150 137 + . . scaffold1599 WUBlastX LINE_Penelope 1135584 1136255 133 + . . scaffold1599 TRF Tandem_Repeat 1137636 1137681 92 + . . scaffold1599 TRF Tandem_Repeat 1138164 1138193 60 + . . scaffold1599 TRF Tandem_Repeat 1142112 1142166 110 + . . scaffold1599 TRF Tandem_Repeat 1145107 1145152 92 + . . scaffold1599 GLEAN promoter 1145261 1146260 0.937811 + . ID=CGI_10027182; scaffold1599 TRF Tandem_Repeat 1145330 1145360 53 + . . scaffold1599 GLEAN mRNA 1146261 1149275 0.937811 + . ID=CGI_10027182; scaffold1599 TRF Tandem_Repeat 1146810 1146929 98 + . . scaffold1599 TRF Tandem_Repeat 1146967 1147060 80 + . . scaffold1599 TRF Tandem_Repeat 1147160 1147278 105 + . . scaffold1599 TRF Tandem_Repeat 1147327 1147468 142 + . . scaffold1599 TRF Tandem_Repeat 1154573 1154630 61 + . . scaffold1599 TRF Tandem_Repeat 1156136 1156171 65 + . . scaffold1599 TRF Tandem_Repeat 1161348 1161496 104 + . . scaffold1599 GLEAN promoter 1163879 1164878 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1164491 1164526 72 + . . scaffold1599 GLEAN mRNA 1164879 1191199 0.639589 + . ID=CGI_10027183; scaffold1599 TRF Tandem_Repeat 1165102 1165135 68 + . . scaffold1599 TRF Tandem_Repeat 1182594 1182725 171 + . . scaffold1599 TRF Tandem_Repeat 1182862 1182933 65 + . . scaffold1599 TRF Tandem_Repeat 1184169 1184848 134 + . . scaffold1599 TRF Tandem_Repeat 1185034 1185128 68 + . . scaffold1599 TRF Tandem_Repeat 1185288 1185400 100 + . . scaffold1599 TRF Tandem_Repeat 1185288 1185400 126 + . . scaffold1599 TRF Tandem_Repeat 1185539 1185630 62 + . . scaffold1599 TRF Tandem_Repeat 1185796 1186001 157 + . . scaffold1599 TRF Tandem_Repeat 1185796 1185994 136 + . . scaffold1599 TRF Tandem_Repeat 1190627 1190666 80 + . . scaffold1599 TRF Tandem_Repeat 1190826 1190870 90 + . . scaffold1599 WUBlastX LINE_RTE-X 1194681 1194980 33 + . . scaffold1599 WUBlastX LINE_RTE-X 1194780 1194989 72 + . . scaffold1599 WUBlastX LINE_RTE-X 1194801 1195121 31 + . . scaffold1599 WUBlastX LINE_RTE-X 1194834 1195067 46 + . . scaffold1599 WUBlastX LINE_RTE-X 1194834 1195028 69 + . . scaffold1599 GLEAN promoter 1198973 1199972 1 + . ID=CGI_10027184; scaffold1599 GLEAN mRNA 1199973 1205452 1 + . ID=CGI_10027184; scaffold1599 TRF Tandem_Repeat 1209363 1209442 160 + . . scaffold1599 TRF Tandem_Repeat 1213859 1213913 110 + . . scaffold1599 TRF Tandem_Repeat 1213919 1213979 69 + . . scaffold1599 TRF Tandem_Repeat 1213920 1213971 50 + . . scaffold1599 GLEAN mRNA 1216500 1224733 0.987363 - . ID=CGI_10027185; scaffold1599 TRF Tandem_Repeat 1218501 1218549 98 + . . scaffold1599 GLEAN promoter 1224734 1225733 0.987363 - . ID=CGI_10027185; scaffold1599 GLEAN mRNA 1225652 1228513 1 - . ID=CGI_10027186; scaffold1599 GLEAN promoter 1228148 1229147 1 + . ID=CGI_10027187; scaffold1599 GLEAN promoter 1228514 1229513 1 - . ID=CGI_10027186; scaffold1599 GLEAN mRNA 1229148 1230448 1 + . ID=CGI_10027187; scaffold1599 GLEAN mRNA 1239579 1253649 0.971924 - . ID=CGI_10027188; scaffold1599 GLEAN promoter 1253650 1254649 0.971924 - . ID=CGI_10027188; scaffold1599 TRF Tandem_Repeat 1255217 1255285 117 + . . scaffold1599 TRF Tandem_Repeat 1259182 1259252 133 + . . scaffold1599 TRF Tandem_Repeat 1275008 1275164 189 + . . scaffold1599 TRF Tandem_Repeat 1275009 1275106 142 + . . scaffold1599 TRF Tandem_Repeat 1275009 1275164 178 + . . scaffold1599 GLEAN promoter 1275868 1276867 0.458894 + . ID=CGI_10027189; scaffold1599 GLEAN mRNA 1276868 1293141 0.458894 + . ID=CGI_10027189; scaffold1599 TRF Tandem_Repeat 1278188 1278306 127 + . . scaffold1599 TRF Tandem_Repeat 1280661 1280745 149 + . . scaffold1599 WUBlastX LTR_Ngaro 1310613 1311026 170 - . . scaffold1599 WUBlastX LTR_Ngaro 1310896 1311588 156 - . . scaffold1599 WUBlastX LTR_Ngaro 1311591 1311809 144 - . . scaffold1599 TRF Tandem_Repeat 1311861 1311891 53 + . . scaffold1599 TRF Tandem_Repeat 1312097 1312851 1113 + . . scaffold1599 WUBlastX LTR_Ngaro 1313293 1313793 350 - . . scaffold1599 WUBlastX LTR_Ngaro 1313802 1313924 58 - . . scaffold1599 WUBlastX LTR_Ngaro 1313924 1314538 243 - . . scaffold1599 WUBlastX LTR_Ngaro 1314637 1315323 200 - . . scaffold1599 WUBlastX LINE_L1-Tx1 1321785 1322327 110 - . . scaffold1599 WUBlastX LINE_L2 1322649 1323302 97 + . . scaffold1599 WUBlastX LINE_CR1-L2 1322892 1323287 115 + . . scaffold1599 WUBlastX LINE_L1-Tx1 1323737 1324099 69 + . . scaffold1599 WUBlastX LINE_L1-Tx1 1323800 1324093 143 + . . scaffold160 WUBlastX LINE_L1-Tx1 3199 3603 25 - . . scaffold160 WUBlastX LINE_L1 3214 3489 33 - . . scaffold160 TRF Tandem_Repeat 5664 5761 133 + . . scaffold160 TRF Tandem_Repeat 6180 6212 66 + . . scaffold160 TRF Tandem_Repeat 6612 6652 66 + . . scaffold160 GLEAN mRNA 34669 35901 0.999642 - . ID=CGI_10020568; scaffold160 GLEAN promoter 35902 36901 0.999642 - . ID=CGI_10020568; scaffold160 TRF Tandem_Repeat 40656 40799 168 + . . scaffold160 TRF Tandem_Repeat 40656 40799 222 + . . scaffold160 TRF Tandem_Repeat 41368 41413 92 + . . scaffold160 TRF Tandem_Repeat 42484 42904 557 + . . scaffold160 WUBlastX DNA_MuDR 43518 45074 31 + . . scaffold160 TRF Tandem_Repeat 47492 47658 217 + . . scaffold160 TRF Tandem_Repeat 49392 49446 110 + . . scaffold160 GLEAN mRNA 54329 55561 0.575441 - . ID=CGI_10020569; scaffold160 GLEAN promoter 55562 56561 0.575441 - . ID=CGI_10020569; scaffold160 GLEAN promoter 61412 62411 0.980373 + . ID=CGI_10020570; scaffold160 GLEAN mRNA 62412 64897 0.980373 + . ID=CGI_10020570; scaffold160 GLEAN mRNA 66447 66635 0.999372 - . ID=CGI_10020571; scaffold160 GLEAN promoter 66636 67635 0.999372 - . ID=CGI_10020571; scaffold160 GLEAN promoter 69473 70472 0.999937 + . ID=CGI_10020572; scaffold160 GLEAN mRNA 70473 80812 0.999937 + . ID=CGI_10020572; scaffold160 TRF Tandem_Repeat 72495 72965 378 + . . scaffold160 TRF Tandem_Repeat 74820 75030 145 + . . scaffold160 TRF Tandem_Repeat 75254 75558 243 + . . scaffold160 GLEAN mRNA 82240 91677 0.910737 - . ID=CGI_10020573; scaffold160 GLEAN promoter 91678 92677 0.910737 - . ID=CGI_10020573; scaffold160 TRF Tandem_Repeat 92267 92317 102 + . . scaffold160 GLEAN mRNA 92803 100229 0.817234 - . ID=CGI_10020574; scaffold160 GLEAN promoter 100230 101229 0.817234 - . ID=CGI_10020574; scaffold160 GLEAN promoter 105307 106306 1 + . ID=CGI_10020575; scaffold160 GLEAN mRNA 106307 108776 1 + . ID=CGI_10020575; scaffold160 GLEAN mRNA 115693 116316 1 - . ID=CGI_10020576; scaffold160 GLEAN promoter 116317 117316 1 - . ID=CGI_10020576; scaffold160 TRF Tandem_Repeat 116878 116925 89 + . . scaffold160 WUBlastX LINE_Penelope 119559 120140 57 - . . scaffold160 WUBlastX LTR_Gypsy 122432 122773 81 + . . scaffold160 WUBlastX LTR_Gypsy 122492 123019 97 + . . scaffold160 WUBlastX LTR_Gypsy-Cigr 122498 122791 193 + . . scaffold160 WUBlastX LTR_Gypsy 122501 122851 178 + . . scaffold160 WUBlastX LTR_Gypsy 123019 123069 20 + . . scaffold160 WUBlastX DNA_Crypton 129240 129638 110 + . . scaffold160 TRF Tandem_Repeat 160884 161844 1052 + . . scaffold160 WUBlastX LINE_CR1-L2 163178 163369 72 + . . scaffold160 WUBlastX LINE_CR1-L2 163187 163348 104 + . . scaffold160 TRF Tandem_Repeat 166494 166560 62 + . . scaffold160 TRF Tandem_Repeat 169818 169884 80 + . . scaffold160 GLEAN promoter 169972 170971 0.999611 + . ID=CGI_10020577; scaffold160 GLEAN mRNA 170972 177701 0.999611 + . ID=CGI_10020577; scaffold160 GLEAN mRNA 177779 208943 0.919015 - . ID=CGI_10020578; scaffold160 WUBlastX LINE_RTE-X 180566 181765 173 - . . scaffold160 WUBlastX LINE_RTE-X 180788 181768 214 - . . scaffold160 TRF Tandem_Repeat 183234 183444 171 + . . scaffold160 TRF Tandem_Repeat 187716 188057 395 + . . scaffold160 TRF Tandem_Repeat 204454 204496 63 + . . scaffold160 TRF Tandem_Repeat 204454 204495 59 + . . scaffold160 GLEAN promoter 208944 209943 0.919015 - . ID=CGI_10020578; scaffold160 GLEAN mRNA 209409 231426 0.981726 - . ID=CGI_10020579; scaffold160 TRF Tandem_Repeat 211413 211468 112 + . . scaffold160 TRF Tandem_Repeat 213303 213731 347 + . . scaffold160 TRF Tandem_Repeat 213303 213731 334 + . . scaffold160 TRF Tandem_Repeat 215871 215951 81 + . . scaffold160 TRF Tandem_Repeat 215872 215951 78 + . . scaffold160 TRF Tandem_Repeat 216012 216078 134 + . . scaffold160 TRF Tandem_Repeat 220527 220633 137 + . . scaffold160 TRF Tandem_Repeat 220530 220631 145 + . . scaffold160 TRF Tandem_Repeat 225051 225914 186 + . . scaffold160 TRF Tandem_Repeat 225405 225915 306 + . . scaffold160 TRF Tandem_Repeat 225498 225913 240 + . . scaffold160 TRF Tandem_Repeat 225499 225605 94 + . . scaffold160 TRF Tandem_Repeat 226565 226621 105 + . . scaffold160 GLEAN promoter 230790 231789 1 + . ID=CGI_10020580; scaffold160 GLEAN promoter 231427 232426 0.981726 - . ID=CGI_10020579; scaffold160 GLEAN mRNA 231790 234218 1 + . ID=CGI_10020580; scaffold160 GLEAN mRNA 238940 259225 0.993906 - . ID=CGI_10020581; scaffold160 TRF Tandem_Repeat 246956 247285 597 + . . scaffold160 TRF Tandem_Repeat 258020 258196 336 + . . scaffold160 TRF Tandem_Repeat 258780 258915 202 + . . scaffold160 GLEAN promoter 259226 260225 0.993906 - . ID=CGI_10020581; scaffold160 GLEAN promoter 263525 264524 0.998724 + . ID=CGI_10020582; scaffold160 GLEAN mRNA 264525 276960 0.998724 + . ID=CGI_10020582; scaffold160 TRF Tandem_Repeat 266565 266594 53 + . . scaffold160 TRF Tandem_Repeat 272407 272445 60 + . . scaffold160 TRF Tandem_Repeat 273519 274262 463 + . . scaffold160 TRF Tandem_Repeat 273519 273814 441 + . . scaffold160 TRF Tandem_Repeat 273736 274844 1656 + . . scaffold160 TRF Tandem_Repeat 273790 274052 89 + . . scaffold160 TRF Tandem_Repeat 274028 274262 389 + . . scaffold160 TRF Tandem_Repeat 274238 274719 106 + . . scaffold160 TRF Tandem_Repeat 274768 275033 435 + . . scaffold160 GLEAN promoter 281492 282491 0.996496 + . ID=CGI_10020584; scaffold160 GLEAN mRNA 282492 283823 0.996496 + . ID=CGI_10020584; scaffold160 GLEAN mRNA 286287 294876 0.997912 - . ID=CGI_10020585; scaffold160 GLEAN promoter 294877 295876 0.997912 - . ID=CGI_10020585; scaffold160 TRF Tandem_Repeat 297498 297696 283 + . . scaffold160 TRF Tandem_Repeat 298358 298830 813 + . . scaffold160 TRF Tandem_Repeat 304054 304134 94 + . . scaffold160 GLEAN promoter 305911 306910 0.999676 + . ID=CGI_10020586; scaffold160 GLEAN mRNA 306911 308226 0.999676 + . ID=CGI_10020586; scaffold160 GLEAN mRNA 312810 318016 1 - . ID=CGI_10020587; scaffold160 GLEAN promoter 318017 319016 1 - . ID=CGI_10020587; scaffold160 GLEAN mRNA 319475 320748 0.628364 - . ID=CGI_10020588; scaffold160 WUBlastX LTR_Pao 319662 319751 20 - . . scaffold160 WUBlastX LTR_Pao 320231 320659 64 - . . scaffold160 WUBlastX LTR_Pao 320309 320683 107 - . . scaffold160 GLEAN promoter 320749 321748 0.628364 - . ID=CGI_10020588; scaffold160 WUBlastX LTR_Pao 320819 321091 27 - . . scaffold160 TRF Tandem_Repeat 322154 322421 308 + . . scaffold160 GLEAN mRNA 322967 324712 0.999443 - . ID=CGI_10020589; scaffold160 GLEAN promoter 324713 325712 0.999443 - . ID=CGI_10020589; scaffold160 GLEAN promoter 324853 325852 0.937789 + . ID=CGI_10020590; scaffold160 TRF Tandem_Repeat 325108 325155 96 + . . scaffold160 GLEAN mRNA 325853 329492 0.937789 + . ID=CGI_10020590; scaffold160 GLEAN promoter 331740 332739 0.996238 + . ID=CGI_10020591; scaffold160 GLEAN mRNA 332740 336753 0.996238 + . ID=CGI_10020591; scaffold160 GLEAN promoter 340764 341763 1 + . ID=CGI_10020592; scaffold160 GLEAN mRNA 341764 344858 1 + . ID=CGI_10020592; scaffold160 TRF Tandem_Repeat 342125 342184 120 + . . scaffold160 WUBlastX LINE_RTE-X 342487 342738 52 + . . scaffold160 WUBlastX LINE_RTE-X 342532 342738 66 + . . scaffold160 TRF Tandem_Repeat 343377 343427 84 + . . scaffold160 TRF Tandem_Repeat 343438 344273 1160 + . . scaffold160 GLEAN promoter 346293 347292 1 + . ID=CGI_10020593; scaffold160 GLEAN mRNA 347293 349172 1 + . ID=CGI_10020593; scaffold160 GLEAN promoter 351163 352162 1 + . ID=CGI_10020594; scaffold160 GLEAN mRNA 352163 353647 1 + . ID=CGI_10020594; scaffold160 TRF Tandem_Repeat 353734 353758 50 + . . scaffold160 TRF Tandem_Repeat 353894 353925 64 + . . scaffold160 WUBlastX LINE_RTE-X 355565 355837 47 - . . scaffold160 GLEAN mRNA 361023 369328 1 - . ID=CGI_10020595; scaffold160 TRF Tandem_Repeat 366776 366984 168 + . . scaffold160 GLEAN promoter 369329 370328 1 - . ID=CGI_10020595; scaffold160 TRF Tandem_Repeat 372350 372395 92 + . . scaffold160 GLEAN promoter 374935 375934 1 + . ID=CGI_10020596; scaffold160 GLEAN mRNA 375935 377473 1 + . ID=CGI_10020596; scaffold160 TRF Tandem_Repeat 379619 379674 112 + . . scaffold160 GLEAN mRNA 381732 381989 0.999372 - . ID=CGI_10020598; scaffold160 GLEAN promoter 381990 382989 0.999372 - . ID=CGI_10020598; scaffold160 GLEAN promoter 382321 383320 1 + . ID=CGI_10020599; scaffold160 GLEAN mRNA 383321 392390 1 + . ID=CGI_10020599; scaffold160 TRF Tandem_Repeat 392563 392797 352 + . . scaffold160 WUBlastX LINE_RTE-X 395375 395515 45 - . . scaffold160 WUBlastX LINE_RTE-X 395426 395515 47 - . . scaffold160 WUBlastX LINE_RTE-X 395515 395799 27 - . . scaffold160 GLEAN mRNA 397061 398707 0.999499 - . ID=CGI_10020600; scaffold160 GLEAN promoter 398708 399707 0.999499 - . ID=CGI_10020600; scaffold160 TRF Tandem_Repeat 400042 400071 60 + . . scaffold160 TRF Tandem_Repeat 402939 403799 888 + . . scaffold160 TRF Tandem_Repeat 405216 405280 130 + . . scaffold160 TRF Tandem_Repeat 408689 408734 83 + . . scaffold160 TRF Tandem_Repeat 409761 409832 74 + . . scaffold160 TRF Tandem_Repeat 409761 409832 65 + . . scaffold160 TRF Tandem_Repeat 411388 411434 58 + . . scaffold160 TRF Tandem_Repeat 412639 412847 409 + . . scaffold160 TRF Tandem_Repeat 416671 416724 108 + . . scaffold160 TRF Tandem_Repeat 417994 418268 424 + . . scaffold160 TRF Tandem_Repeat 418268 420675 3466 + . . scaffold160 TRF Tandem_Repeat 420900 421049 118 + . . scaffold160 TRF Tandem_Repeat 420902 421019 125 + . . scaffold160 GLEAN mRNA 429018 433817 0.728269 - . ID=CGI_10020601; scaffold160 GLEAN promoter 433818 434817 0.728269 - . ID=CGI_10020601; scaffold160 TRF Tandem_Repeat 435843 436787 906 + . . scaffold160 TRF Tandem_Repeat 436097 436237 68 + . . scaffold160 WUBlastX LTR_Ngaro 440121 440714 434 - . . scaffold160 WUBlastX LTR_Ngaro 440699 440848 24 - . . scaffold160 WUBlastX LTR_Ngaro 440898 441719 146 - . . scaffold160 WUBlastX LTR_Ngaro 441159 441830 259 - . . scaffold160 WUBlastX LINE_L1-Tx1 446031 446237 77 + . . scaffold160 WUBlastX LINE_L1-Tx1 446040 446273 49 + . . scaffold160 GLEAN mRNA 446741 450413 0.875344 - . ID=CGI_10020602; scaffold160 TRF Tandem_Repeat 447824 447887 64 + . . scaffold160 TRF Tandem_Repeat 447861 448027 152 + . . scaffold160 TRF Tandem_Repeat 448922 449123 165 + . . scaffold160 GLEAN promoter 450414 451413 0.875344 - . ID=CGI_10020602; scaffold160 WUBlastX LINE_Telomeric 464034 464432 67 - . . scaffold160 GLEAN mRNA 465850 466791 0.999376 - . ID=CGI_10020603; scaffold160 GLEAN promoter 466792 467791 0.999376 - . ID=CGI_10020603; scaffold160 TRF Tandem_Repeat 469580 469623 88 + . . scaffold160 WUBlastX LTR_Gypsy 474029 474115 26 - . . scaffold160 WUBlastX LTR_Gypsy 474471 476039 948 - . . scaffold160 WUBlastX LTR_Gypsy 476041 476244 160 - . . scaffold160 WUBlastX LTR_Gypsy 476171 476836 234 - . . scaffold160 WUBlastX LTR_Gypsy 476342 476884 269 - . . scaffold160 WUBlastX LTR_Gypsy 476926 477480 37 - . . scaffold160 WUBlastX LTR_Gypsy 477100 477447 97 - . . scaffold160 WUBlastX LTR_Gypsy 477124 477513 62 - . . scaffold160 WUBlastX LTR_Gypsy 477839 478015 20 - . . scaffold160 WUBlastX LTR_Gypsy 478078 478422 99 - . . scaffold160 WUBlastX LTR_Gypsy 478078 478701 93 - . . scaffold160 WUBlastX LTR_Gypsy 478117 478377 115 - . . scaffold160 TRF Tandem_Repeat 480512 480578 66 + . . scaffold160 WUBlastX DNA_Maverick 486186 486365 30 + . . scaffold160 WUBlastX DNA_Maverick 486830 487450 253 + . . scaffold160 WUBlastX DNA_Maverick 487281 487913 462 + . . scaffold160 WUBlastX DNA_Maverick 487998 488036 29 + . . scaffold160 WUBlastX DNA_Maverick 488030 488302 124 + . . scaffold160 TRF Tandem_Repeat 495931 495990 52 + . . scaffold160 GLEAN promoter 497862 498861 0.994424 + . ID=CGI_10020604; scaffold160 GLEAN mRNA 498862 500159 0.994424 + . ID=CGI_10020604; scaffold160 WUBlastX DNA_Crypton 499509 500123 150 + . . scaffold160 WUBlastX DNA_Crypton 500122 500556 53 + . . scaffold160 WUBlastX DNA_Crypton 500173 500418 86 + . . scaffold160 GLEAN mRNA 515086 515891 1 - . ID=CGI_10020605; scaffold160 GLEAN promoter 515892 516891 1 - . ID=CGI_10020605; scaffold160 WUBlastX DNA_Merlin 518951 519352 52 - . . scaffold160 GLEAN mRNA 523738 543493 0.85871 - . ID=CGI_10020606; scaffold160 WUBlastX DNA_hAT-Tip100 523789 523983 38 - . . scaffold160 WUBlastX DNA_hAT-Tip100 523852 523983 50 - . . scaffold160 WUBlastX DNA_hAT-Tip100 524212 524298 24 - . . scaffold160 WUBlastX LINE_L1-Tx1 528035 529153 426 + . . scaffold160 WUBlastX LINE_L1-Tx1 529164 530129 405 + . . scaffold160 GLEAN promoter 543494 544493 0.85871 - . ID=CGI_10020606; scaffold160 GLEAN promoter 556392 557391 1 + . ID=CGI_10020607; scaffold160 GLEAN mRNA 557392 557751 1 + . ID=CGI_10020607; scaffold160 TRF Tandem_Repeat 560831 560864 68 + . . scaffold160 TRF Tandem_Repeat 571285 571364 151 + . . scaffold160 GLEAN promoter 575436 576435 0.481188 + . ID=CGI_10020608; scaffold160 GLEAN mRNA 576436 576804 0.481188 + . ID=CGI_10020608; scaffold160 GLEAN promoter 579550 580549 0.999998 + . ID=CGI_10020609; scaffold160 GLEAN mRNA 580550 580912 0.999998 + . ID=CGI_10020609; scaffold160 GLEAN promoter 582191 583190 0.593386 + . ID=CGI_10020610; scaffold160 GLEAN promoter 583069 584068 0.999372 + . ID=CGI_10020611; scaffold160 GLEAN mRNA 583191 583535 0.593386 + . ID=CGI_10020610; scaffold160 GLEAN mRNA 584069 584443 0.999372 + . ID=CGI_10020611; scaffold160 WUBlastX LINE_CR1 601491 601595 53 - . . scaffold160 WUBlastX LINE_CR1 601562 601837 63 - . . scaffold160 WUBlastX LINE_CR1 601613 601837 74 - . . scaffold160 GLEAN promoter 606475 607474 1 + . ID=CGI_10020612; scaffold160 GLEAN mRNA 607475 609448 1 + . ID=CGI_10020612; scaffold160 TRF Tandem_Repeat 614532 615091 622 + . . scaffold160 TRF Tandem_Repeat 614532 615091 629 + . . scaffold160 TRF Tandem_Repeat 614558 615091 727 + . . scaffold160 TRF Tandem_Repeat 618360 618392 66 + . . scaffold160 TRF Tandem_Repeat 628649 628695 94 + . . scaffold160 TRF Tandem_Repeat 634141 634837 720 + . . scaffold160 TRF Tandem_Repeat 636636 636684 98 + . . scaffold160 TRF Tandem_Repeat 639022 639161 120 + . . scaffold160 GLEAN promoter 639308 640307 0.65427 + . ID=CGI_10020613; scaffold160 GLEAN mRNA 640308 646151 0.65427 + . ID=CGI_10020613; scaffold160 GLEAN mRNA 646949 654505 0.999523 - . ID=CGI_10020614; scaffold160 GLEAN promoter 654506 655505 0.999523 - . ID=CGI_10020614; scaffold1600 TRF Tandem_Repeat 2970 3006 65 + . . scaffold1600 GLEAN mRNA 5165 66532 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 25354 25395 84 + . . scaffold1600 TRF Tandem_Repeat 32042 32099 109 + . . scaffold1600 TRF Tandem_Repeat 37054 37119 132 + . . scaffold1600 TRF Tandem_Repeat 43553 43608 58 + . . scaffold1600 TRF Tandem_Repeat 45089 45229 129 + . . scaffold1600 TRF Tandem_Repeat 46228 46341 124 + . . scaffold1600 TRF Tandem_Repeat 48734 48774 82 + . . scaffold1600 TRF Tandem_Repeat 49291 49320 60 + . . scaffold1600 TRF Tandem_Repeat 50684 51057 364 + . . scaffold1600 TRF Tandem_Repeat 51127 51457 509 + . . scaffold1600 TRF Tandem_Repeat 54238 54283 92 + . . scaffold1600 TRF Tandem_Repeat 57734 57774 73 + . . scaffold1600 GLEAN promoter 66533 67532 0.604341 - . ID=CGI_10013033; scaffold1600 TRF Tandem_Repeat 69034 69062 58 + . . scaffold1600 TRF Tandem_Repeat 71760 71803 88 + . . scaffold1600 GLEAN mRNA 76795 84800 0.996819 - . ID=CGI_10013034; scaffold1600 GLEAN promoter 84801 85800 0.996819 - . ID=CGI_10013034; scaffold1600 GLEAN mRNA 85225 91404 0.999676 - . ID=CGI_10013035; scaffold1600 TRF Tandem_Repeat 88599 88634 72 + . . scaffold1600 GLEAN promoter 91405 92404 0.999676 - . ID=CGI_10013035; scaffold1600 GLEAN promoter 93170 94169 0.99989 + . ID=CGI_10013036; scaffold1600 GLEAN mRNA 94170 103095 0.99989 + . ID=CGI_10013036; scaffold1600 TRF Tandem_Repeat 97784 97824 66 + . . scaffold1600 TRF Tandem_Repeat 103304 103409 92 + . . scaffold1600 TRF Tandem_Repeat 108796 110028 1439 + . . scaffold1600 GLEAN promoter 111223 112222 0.999138 + . ID=CGI_10013037; scaffold1600 GLEAN mRNA 112223 169446 0.999138 + . ID=CGI_10013037; scaffold1600 TRF Tandem_Repeat 112990 113298 246 + . . scaffold1600 TRF Tandem_Repeat 112991 113304 260 + . . scaffold1600 TRF Tandem_Repeat 114990 115140 151 + . . scaffold1600 TRF Tandem_Repeat 114992 115169 126 + . . scaffold1600 TRF Tandem_Repeat 117954 118027 121 + . . scaffold1600 TRF Tandem_Repeat 126234 126287 99 + . . scaffold1600 TRF Tandem_Repeat 128739 128791 97 + . . scaffold1600 TRF Tandem_Repeat 129016 129074 118 + . . scaffold1600 TRF Tandem_Repeat 134592 134640 98 + . . scaffold1600 TRF Tandem_Repeat 138697 139012 348 + . . scaffold1600 TRF Tandem_Repeat 145070 145118 98 + . . scaffold1600 TRF Tandem_Repeat 158351 159449 1034 + . . scaffold1600 TRF Tandem_Repeat 158398 158502 61 + . . scaffold1600 TRF Tandem_Repeat 158460 159709 712 + . . scaffold1600 TRF Tandem_Repeat 158766 159441 750 + . . scaffold1600 TRF Tandem_Repeat 158770 159449 801 + . . scaffold1600 TRF Tandem_Repeat 159462 159741 411 + . . scaffold1600 TRF Tandem_Repeat 164818 164932 81 + . . scaffold1600 TRF Tandem_Repeat 164823 164932 94 + . . scaffold1600 GLEAN promoter 178369 179368 0.98626 + . ID=CGI_10013038; scaffold1600 GLEAN mRNA 179369 186583 0.98626 + . ID=CGI_10013038; scaffold1600 GLEAN mRNA 182749 197532 0.996574 - . ID=CGI_10013039; scaffold1600 WUBlastX LTR_DIRS 184574 184669 22 + . . scaffold1600 WUBlastX LTR_DIRS 184624 184776 33 + . . scaffold1600 WUBlastX LTR_DIRS 184660 184761 36 + . . scaffold1600 WUBlastX LTR_DIRS 185382 185555 21 + . . scaffold1600 WUBlastX LTR_DIRS 185827 186168 55 + . . scaffold1600 WUBlastX LTR_DIRS 185827 185988 56 + . . scaffold1600 TRF Tandem_Repeat 190284 191368 1753 + . . scaffold1600 WUBlastX LINE_Proto2 194791 195834 40 + . . scaffold1600 WUBlastX LINE_RTE-BovB 194965 196134 756 + . . scaffold1600 WUBlastX LINE_RTE-BovB 196007 196168 52 + . . scaffold1600 GLEAN promoter 197533 198532 0.996574 - . ID=CGI_10013039; scaffold1600 GLEAN promoter 201796 202795 0.593383 + . ID=CGI_10013040; scaffold1600 GLEAN mRNA 202796 206912 0.593383 + . ID=CGI_10013040; scaffold1600 TRF Tandem_Repeat 204520 204564 54 + . . scaffold1600 TRF Tandem_Repeat 204776 204812 74 + . . scaffold1600 TRF Tandem_Repeat 208178 208215 76 + . . scaffold1600 GLEAN mRNA 208223 214219 0.999973 - . ID=CGI_10013041; scaffold1600 GLEAN promoter 214220 215219 0.999973 - . ID=CGI_10013041; scaffold1600 TRF Tandem_Repeat 220125 220170 92 + . . scaffold1600 TRF Tandem_Repeat 224532 224559 56 + . . scaffold1600 TRF Tandem_Repeat 224593 224648 112 + . . scaffold1600 GLEAN promoter 224924 225923 0.999572 + . ID=CGI_10013042; scaffold1600 GLEAN mRNA 225924 232230 0.999572 + . ID=CGI_10013042; scaffold1600 GLEAN mRNA 234305 235006 0.59015 - . ID=CGI_10013043; scaffold1600 GLEAN promoter 235007 236006 0.59015 - . ID=CGI_10013043; scaffold1600 TRF Tandem_Repeat 237489 237533 90 + . . scaffold1600 GLEAN promoter 237859 238858 0.99867 + . ID=CGI_10013044; scaffold1600 GLEAN mRNA 238859 248417 0.99867 + . ID=CGI_10013044; scaffold1600 TRF Tandem_Repeat 238907 239195 485 + . . scaffold1600 TRF Tandem_Repeat 244214 244258 90 + . . scaffold1600 TRF Tandem_Repeat 245600 245653 99 + . . scaffold1600 WUBlastX LINE_L1-Tx1 249511 249606 28 - . . scaffold1600 WUBlastX LINE_L1-Tx1 249978 250100 75 - . . scaffold1600 WUBlastX LTR_Gypsy 251232 252053 68 + . . scaffold1600 WUBlastX LTR_Gypsy 251310 251981 180 + . . scaffold1600 WUBlastX LTR_Gypsy 252058 253941 1556 + . . scaffold1600 GLEAN promoter 269304 270303 0.449848 + . ID=CGI_10013045; scaffold1600 GLEAN mRNA 270304 277874 0.449848 + . ID=CGI_10013045; scaffold1600 TRF Tandem_Repeat 276173 276202 60 + . . scaffold1600 TRF Tandem_Repeat 276458 276491 68 + . . scaffold1600 GLEAN mRNA 281495 305209 0.999999 - . ID=CGI_10013046; scaffold1600 TRF Tandem_Repeat 289264 289289 52 + . . scaffold1600 TRF Tandem_Repeat 296940 296984 90 + . . scaffold1600 GLEAN promoter 305210 306209 0.999999 - . ID=CGI_10013046; scaffold1600 GLEAN mRNA 306873 309347 0.937847 - . ID=CGI_10013047; scaffold1600 GLEAN promoter 309348 310347 0.937847 - . ID=CGI_10013047; scaffold1600 GLEAN promoter 310807 311806 0.772358 + . ID=CGI_10013048; scaffold1600 GLEAN mRNA 311807 313375 0.772358 + . ID=CGI_10013048; scaffold1601 TRF Tandem_Repeat 3217 3267 50 + . . scaffold1601 TRF Tandem_Repeat 3224 3267 54 + . . scaffold1601 WUBlastX LINE_RTE-X 3444 6233 862 - . . scaffold1601 WUBlastX LINE_RTE-X 6238 6501 69 - . . scaffold1601 WUBlastX LINE_RTE-X 6319 6501 71 - . . scaffold1601 WUBlastX LINE_RTE-X 6346 6594 51 - . . scaffold1601 WUBlastX LINE_RTE-X 7551 7877 85 - . . scaffold1601 WUBlastX LINE_CR1 7575 7994 72 - . . scaffold1601 WUBlastX LINE_L1-Tx1 8043 8828 114 - . . scaffold1601 WUBlastX LINE_L1 8046 8696 196 - . . scaffold1601 WUBlastX LTR_ERV1 8448 8909 55 - . . scaffold1601 GLEAN promoter 8638 9637 0.937841 + . ID=CGI_10010239; scaffold1601 GLEAN mRNA 9638 17196 0.937841 + . ID=CGI_10010239; scaffold1601 GLEAN promoter 28631 29630 1 + . ID=CGI_10010240; scaffold1601 GLEAN mRNA 29631 35658 1 + . ID=CGI_10010240; scaffold1601 GLEAN promoter 42292 43291 0.993906 + . ID=CGI_10010241; scaffold1601 GLEAN mRNA 43292 44974 0.993906 + . ID=CGI_10010241; scaffold1601 GLEAN mRNA 48912 60765 0.999949 - . ID=CGI_10010242; scaffold1601 TRF Tandem_Repeat 60277 60329 106 + . . scaffold1601 GLEAN promoter 60766 61765 0.999949 - . ID=CGI_10010242; scaffold1601 TRF Tandem_Repeat 60991 61422 163 + . . scaffold1601 GLEAN mRNA 63974 79945 0.843264 - . ID=CGI_10010243; scaffold1601 TRF Tandem_Repeat 70407 70650 210 + . . scaffold1601 TRF Tandem_Repeat 70440 71614 548 + . . scaffold1601 TRF Tandem_Repeat 70702 71591 1456 + . . scaffold1601 TRF Tandem_Repeat 72912 73226 114 + . . scaffold1601 TRF Tandem_Repeat 73052 73226 206 + . . scaffold1601 TRF Tandem_Repeat 75522 75937 566 + . . scaffold1601 GLEAN promoter 79821 80820 0.992457 + . ID=CGI_10010244; scaffold1601 GLEAN promoter 79946 80945 0.843264 - . ID=CGI_10010243; scaffold1601 GLEAN mRNA 80821 93267 0.992457 + . ID=CGI_10010244; scaffold1601 TRF Tandem_Repeat 81422 81521 67 + . . scaffold1601 TRF Tandem_Repeat 91032 91178 222 + . . scaffold1601 GLEAN mRNA 96189 107234 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 97343 97463 104 + . . scaffold1601 TRF Tandem_Repeat 98682 99094 520 + . . scaffold1601 TRF Tandem_Repeat 98686 99094 575 + . . scaffold1601 TRF Tandem_Repeat 100839 100876 51 + . . scaffold1601 TRF Tandem_Repeat 102492 102539 96 + . . scaffold1601 TRF Tandem_Repeat 104010 104182 238 + . . scaffold1601 TRF Tandem_Repeat 104194 104357 247 + . . scaffold1601 TRF Tandem_Repeat 104371 104921 652 + . . scaffold1601 GLEAN promoter 107235 108234 0.687575 - . ID=CGI_10010245; scaffold1601 TRF Tandem_Repeat 108480 108731 378 + . . scaffold1601 GLEAN mRNA 109560 120800 0.619861 - . ID=CGI_10010246; scaffold1601 TRF Tandem_Repeat 109850 110653 606 + . . scaffold1601 TRF Tandem_Repeat 111862 111886 50 + . . scaffold1601 TRF Tandem_Repeat 113101 113132 64 + . . scaffold1601 TRF Tandem_Repeat 114020 114191 116 + . . scaffold1601 TRF Tandem_Repeat 120665 120703 69 + . . scaffold1601 GLEAN promoter 120801 121800 0.619861 - . ID=CGI_10010246; scaffold1601 GLEAN mRNA 120815 123749 0.999999 - . ID=CGI_10010247; scaffold1601 TRF Tandem_Repeat 122048 122246 326 + . . scaffold1601 TRF Tandem_Repeat 123421 123468 96 + . . scaffold1601 GLEAN promoter 123750 124749 0.999999 - . ID=CGI_10010247; scaffold1601 GLEAN mRNA 124931 133334 0.999825 - . ID=CGI_10010248; scaffold1601 GLEAN promoter 130875 131874 1 + . ID=CGI_10010249; scaffold1601 GLEAN mRNA 131875 134912 1 + . ID=CGI_10010249; scaffold1601 GLEAN promoter 133335 134334 0.999825 - . ID=CGI_10010248; scaffold1601 GLEAN mRNA 135362 139826 0.999999 - . ID=CGI_10010250; scaffold1601 GLEAN promoter 139827 140826 0.999999 - . ID=CGI_10010250; scaffold1601 GLEAN promoter 141367 142366 0.999675 + . ID=CGI_10010251; scaffold1601 GLEAN mRNA 142367 148508 0.999675 + . ID=CGI_10010251; scaffold1601 TRF Tandem_Repeat 145680 145712 66 + . . scaffold1601 GLEAN promoter 148368 149367 0.395542 + . ID=CGI_10010252; scaffold1601 GLEAN mRNA 149368 171766 0.395542 + . ID=CGI_10010252; scaffold1601 TRF Tandem_Repeat 157139 158162 1036 + . . scaffold1601 TRF Tandem_Repeat 157139 158162 1230 + . . scaffold1601 TRF Tandem_Repeat 157162 158162 1056 + . . scaffold1601 GLEAN promoter 174146 175145 0.984004 + . ID=CGI_10010253; scaffold1601 GLEAN mRNA 175146 189359 0.984004 + . ID=CGI_10010253; scaffold1601 WUBlastX LINE_L2 192073 192174 22 + . . scaffold1601 WUBlastX LINE_L2 192358 192963 35 + . . scaffold1601 WUBlastX LINE_L2 192460 192963 110 + . . scaffold1601 WUBlastX LINE_L2 192541 192963 144 + . . scaffold1601 WUBlastX LINE_L2 192959 193294 139 + . . scaffold1601 WUBlastX LINE_L2 192959 193366 86 + . . scaffold1601 WUBlastX LINE_L2 193591 193710 23 + . . scaffold1601 GLEAN mRNA 199271 215918 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 199769 200051 261 + . . scaffold1601 TRF Tandem_Repeat 203042 203757 1132 + . . scaffold1601 TRF Tandem_Repeat 203927 204082 267 + . . scaffold1601 TRF Tandem_Repeat 206894 206934 82 + . . scaffold1601 TRF Tandem_Repeat 208170 208231 54 + . . scaffold1601 TRF Tandem_Repeat 208170 208231 54 + . . scaffold1601 TRF Tandem_Repeat 209143 209696 686 + . . scaffold1601 GLEAN promoter 215919 216918 0.766035 - . ID=CGI_10010254; scaffold1601 TRF Tandem_Repeat 219439 219501 108 + . . scaffold1601 TRF Tandem_Repeat 223566 223594 51 + . . scaffold1601 TRF Tandem_Repeat 224558 225512 1251 + . . scaffold1601 TRF Tandem_Repeat 226630 226680 95 + . . scaffold1601 GLEAN mRNA 226820 229750 0.758444 - . ID=CGI_10010255; scaffold1601 GLEAN promoter 229751 230750 0.758444 - . ID=CGI_10010255; scaffold1601 TRF Tandem_Repeat 231305 231369 76 + . . scaffold1601 TRF Tandem_Repeat 231865 231898 68 + . . scaffold1601 TRF Tandem_Repeat 232111 232173 117 + . . scaffold1601 TRF Tandem_Repeat 234236 234292 60 + . . scaffold1601 GLEAN promoter 238577 239576 0.999996 + . ID=CGI_10010256; scaffold1601 GLEAN mRNA 239577 245693 0.999996 + . ID=CGI_10010256; scaffold1601 TRF Tandem_Repeat 245951 245994 70 + . . scaffold1601 GLEAN promoter 246710 247709 0.986676 + . ID=CGI_10010257; scaffold1601 GLEAN mRNA 247710 249416 0.986676 + . ID=CGI_10010257; scaffold1601 GLEAN mRNA 251131 253190 0.99996 - . ID=CGI_10010258; scaffold1601 GLEAN promoter 253191 254190 0.99996 - . ID=CGI_10010258; scaffold1601 WUBlastX LTR_Gypsy 254259 254633 99 - . . scaffold1601 WUBlastX LTR_Gypsy-Cigr 254409 255011 59 - . . scaffold1601 WUBlastX LTR_Gypsy 254418 254693 100 - . . scaffold1601 WUBlastX LTR_Gypsy 254421 254651 105 - . . scaffold1601 WUBlastX LTR_Gypsy 254421 254756 80 - . . scaffold1601 WUBlastX LTR_Gypsy 254947 255639 146 - . . scaffold1601 WUBlastX LTR_Gypsy-Cigr 255124 255624 364 - . . scaffold1601 WUBlastX LTR_Gypsy 255629 256321 401 - . . scaffold1601 WUBlastX LTR_Gypsy 256413 256484 21 - . . scaffold1601 WUBlastX LTR_Gypsy 257106 257495 35 - . . scaffold1601 WUBlastX LTR_Gypsy-Cigr 257229 257495 52 - . . scaffold1601 WUBlastX LTR_Gypsy 257238 257564 35 - . . scaffold1602 GLEAN promoter 8232 9231 0.999991 + . ID=CGI_10001682; scaffold1602 GLEAN mRNA 9232 9810 0.999991 + . ID=CGI_10001682; scaffold1602 GLEAN promoter 11456 12455 0.999999 + . ID=CGI_10001685; scaffold1602 GLEAN mRNA 12456 14258 0.999999 + . ID=CGI_10001685; scaffold1602 GLEAN promoter 14666 15665 1 + . ID=CGI_10001688; scaffold1602 GLEAN mRNA 15666 17102 1 + . ID=CGI_10001688; scaffold1602 GLEAN mRNA 19311 20219 0.999999 - . ID=CGI_10001690; scaffold1602 GLEAN promoter 20220 21219 0.999999 - . ID=CGI_10001690; scaffold1602 GLEAN mRNA 20360 21262 0.999999 - . ID=CGI_10001691; scaffold1602 GLEAN promoter 21263 22262 0.999999 - . ID=CGI_10001691; scaffold1602 GLEAN mRNA 21301 22089 0.800954 - . ID=CGI_10001692; scaffold1602 GLEAN promoter 22090 23089 0.800954 - . ID=CGI_10001692; scaffold1602 GLEAN mRNA 26215 27327 0.998548 - . ID=CGI_10001696; scaffold1602 GLEAN promoter 27328 28327 0.998548 - . ID=CGI_10001696; scaffold1603 WUBlastX DNA_IS4EU 2752 2877 36 - . . scaffold1603 WUBlastX DNA_IS4EU 3127 3759 37 - . . scaffold1603 TRF Tandem_Repeat 25423 25452 60 + . . scaffold1603 TRF Tandem_Repeat 25596 25637 84 + . . scaffold1603 TRF Tandem_Repeat 26682 26796 169 + . . scaffold1603 TRF Tandem_Repeat 27214 27245 64 + . . scaffold1603 TRF Tandem_Repeat 28351 28387 74 + . . scaffold1603 TRF Tandem_Repeat 29922 30023 143 + . . scaffold1603 GLEAN mRNA 30175 43783 0.728287 - . ID=CGI_10012815; scaffold1603 TRF Tandem_Repeat 31820 31865 76 + . . scaffold1603 TRF Tandem_Repeat 34007 34320 330 + . . scaffold1603 TRF Tandem_Repeat 37379 37461 103 + . . scaffold1603 TRF Tandem_Repeat 37379 37461 103 + . . scaffold1603 TRF Tandem_Repeat 37379 37461 103 + . . scaffold1603 GLEAN promoter 43784 44783 0.728287 - . ID=CGI_10012815; scaffold1603 GLEAN mRNA 44108 68236 0.999997 - . ID=CGI_10012816; scaffold1603 TRF Tandem_Repeat 46979 47023 81 + . . scaffold1603 TRF Tandem_Repeat 49741 50130 564 + . . scaffold1603 WUBlastX DNA_P 58274 58828 32 - . . scaffold1603 WUBlastX DNA_P 58274 58987 22 - . . scaffold1603 WUBlastX RC_Helitron 59714 60229 99 + . . scaffold1603 WUBlastX RC_Helitron 59747 60184 107 + . . scaffold1603 WUBlastX RC_Helitron 59783 60142 110 + . . scaffold1603 GLEAN promoter 65173 66172 0.560979 + . ID=CGI_10012817; scaffold1603 GLEAN mRNA 66173 72511 0.560979 + . ID=CGI_10012817; scaffold1603 GLEAN promoter 68237 69236 0.999997 - . ID=CGI_10012816; scaffold1603 GLEAN mRNA 77836 92708 1 - . ID=CGI_10012818; scaffold1603 GLEAN promoter 92709 93708 1 - . ID=CGI_10012818; scaffold1603 GLEAN promoter 92971 93970 0.756186 + . ID=CGI_10012819; scaffold1603 GLEAN mRNA 93971 94129 0.756186 + . ID=CGI_10012819; scaffold1603 TRF Tandem_Repeat 116987 117013 54 + . . scaffold1603 TRF Tandem_Repeat 120506 120556 102 + . . scaffold1603 TRF Tandem_Repeat 125249 125530 322 + . . scaffold1603 GLEAN promoter 131329 132328 0.886198 + . ID=CGI_10012820; scaffold1603 GLEAN mRNA 132329 144611 0.886198 + . ID=CGI_10012820; scaffold1603 TRF Tandem_Repeat 138493 139154 805 + . . scaffold1603 GLEAN mRNA 146519 147139 0.815999 - . ID=CGI_10012821; scaffold1603 GLEAN promoter 147140 148139 0.815999 - . ID=CGI_10012821; scaffold1603 GLEAN mRNA 155672 175240 0.99949 - . ID=CGI_10012822; scaffold1603 TRF Tandem_Repeat 157658 157709 68 + . . scaffold1603 TRF Tandem_Repeat 157709 157743 70 + . . scaffold1603 TRF Tandem_Repeat 161009 161123 158 + . . scaffold1603 TRF Tandem_Repeat 161983 162290 321 + . . scaffold1603 TRF Tandem_Repeat 161983 162289 389 + . . scaffold1603 TRF Tandem_Repeat 165378 165435 116 + . . scaffold1603 GLEAN promoter 175241 176240 0.99949 - . ID=CGI_10012822; scaffold1603 GLEAN promoter 179829 180828 0.472249 + . ID=CGI_10012823; scaffold1603 GLEAN mRNA 180829 183388 0.472249 + . ID=CGI_10012823; scaffold1603 GLEAN promoter 182410 183409 0.671565 + . ID=CGI_10012824; scaffold1603 GLEAN mRNA 183410 203387 0.671565 + . ID=CGI_10012824; scaffold1603 TRF Tandem_Repeat 188155 188840 948 + . . scaffold1603 TRF Tandem_Repeat 198292 199008 1108 + . . scaffold1603 TRF Tandem_Repeat 198292 199008 1125 + . . scaffold1603 TRF Tandem_Repeat 198292 199008 1122 + . . scaffold1603 TRF Tandem_Repeat 199944 200102 191 + . . scaffold1603 TRF Tandem_Repeat 199948 200102 217 + . . scaffold1603 GLEAN mRNA 215825 216508 0.998274 - . ID=CGI_10012825; scaffold1603 GLEAN promoter 216509 217508 0.998274 - . ID=CGI_10012825; scaffold1603 TRF Tandem_Repeat 238938 238990 106 + . . scaffold1603 TRF Tandem_Repeat 242334 242359 52 + . . scaffold1603 TRF Tandem_Repeat 245664 245794 111 + . . scaffold1603 TRF Tandem_Repeat 249033 249076 88 + . . scaffold1603 TRF Tandem_Repeat 249895 249941 94 + . . scaffold1603 TRF Tandem_Repeat 259002 259066 121 + . . scaffold1603 GLEAN promoter 261697 262696 0.980091 + . ID=CGI_10012826; scaffold1603 GLEAN mRNA 262697 264962 0.980091 + . ID=CGI_10012826; scaffold1603 TRF Tandem_Repeat 268693 268741 98 + . . scaffold1603 TRF Tandem_Repeat 290739 290781 86 + . . scaffold1603 TRF Tandem_Repeat 303315 303353 78 + . . scaffold1603 TRF Tandem_Repeat 308133 308169 65 + . . scaffold1603 GLEAN mRNA 317403 337665 0.999674 - . ID=CGI_10012827; scaffold1603 GLEAN promoter 318393 319392 0.999992 + . ID=CGI_10012828; scaffold1603 GLEAN mRNA 319393 326227 0.999992 + . ID=CGI_10012828; scaffold1603 WUBlastX LTR_Pao 331560 331601 27 - . . scaffold1603 WUBlastX LTR_Pao 331560 331610 24 - . . scaffold1603 WUBlastX LTR_Pao 331630 331938 125 - . . scaffold1603 WUBlastX LTR_Pao 331801 331980 84 - . . scaffold1603 WUBlastX LTR_Pao 331940 332104 28 - . . scaffold1603 WUBlastX LTR_Pao 331952 332011 40 - . . scaffold1603 WUBlastX LTR_Pao 332070 333143 156 - . . scaffold1603 WUBlastX LTR_Pao 332076 332528 170 - . . scaffold1603 WUBlastX LTR_Pao 333158 333376 103 - . . scaffold1603 WUBlastX LTR_Pao 333170 333421 69 - . . scaffold1603 WUBlastX LTR_Pao 333361 333558 62 - . . scaffold1603 WUBlastX LTR_Pao 333551 333682 47 - . . scaffold1603 WUBlastX LTR_Pao 333688 333831 42 - . . scaffold1603 WUBlastX LTR_Pao 333703 333795 43 - . . scaffold1603 WUBlastX LTR_Pao 333780 333998 35 - . . scaffold1603 WUBlastX LTR_Pao 333867 334100 96 - . . scaffold1603 WUBlastX LTR_Pao 334127 334576 22 - . . scaffold1603 WUBlastX LTR_Pao 334130 334402 29 - . . scaffold1603 WUBlastX LTR_Pao 334564 334644 21 - . . scaffold1603 TRF Tandem_Repeat 336600 337096 976 + . . scaffold1603 GLEAN promoter 337666 338665 0.999674 - . ID=CGI_10012827; scaffold1604 GLEAN promoter 14493 15492 0.69447 + . ID=CGI_10001294; scaffold1604 GLEAN mRNA 15493 17331 0.69447 + . ID=CGI_10001294; scaffold1605 GLEAN mRNA 545 2773 0.998497 - . ID=CGI_10023339; scaffold1605 GLEAN promoter 2774 3773 0.998497 - . ID=CGI_10023339; scaffold1605 TRF Tandem_Repeat 5352 5407 112 + . . scaffold1605 WUBlastX LINE_RTE-X 8269 8601 35 - . . scaffold1605 WUBlastX LINE_RTE-X 9459 9515 20 - . . scaffold1605 GLEAN mRNA 11402 13497 0.727003 - . ID=CGI_10023340; scaffold1605 WUBlastX LINE_L2 12437 12709 33 - . . scaffold1605 TRF Tandem_Repeat 12951 12994 88 + . . scaffold1605 GLEAN promoter 13498 14497 0.727003 - . ID=CGI_10023340; scaffold1605 GLEAN mRNA 14580 14930 0.734447 - . ID=CGI_10023341; scaffold1605 GLEAN promoter 14931 15930 0.734447 - . ID=CGI_10023341; scaffold1605 TRF Tandem_Repeat 15167 15211 90 + . . scaffold1605 GLEAN mRNA 17660 26242 0.997192 - . ID=CGI_10023342; scaffold1605 TRF Tandem_Repeat 19214 19246 66 + . . scaffold1605 TRF Tandem_Repeat 21041 21189 79 + . . scaffold1605 TRF Tandem_Repeat 22195 22977 693 + . . scaffold1605 GLEAN promoter 26243 27242 0.997192 - . ID=CGI_10023342; scaffold1605 TRF Tandem_Repeat 30026 30089 128 + . . scaffold1605 WUBlastX LINE_RTE-X 32239 32730 132 - . . scaffold1605 WUBlastX LINE_RTE-X 32335 32736 144 - . . scaffold1605 WUBlastX LINE_RTE-X 32705 33085 224 - . . scaffold1605 WUBlastX LINE_RTE-X 33105 33266 87 - . . scaffold1605 GLEAN mRNA 51474 53886 1 - . ID=CGI_10023343; scaffold1605 WUBlastX DNA_hAT 53509 53865 117 - . . scaffold1605 GLEAN promoter 53887 54886 1 - . ID=CGI_10023343; scaffold1605 GLEAN promoter 55141 56140 0.998504 + . ID=CGI_10023344; scaffold1605 GLEAN promoter 55602 56601 0.682759 + . ID=CGI_10023345; scaffold1605 GLEAN mRNA 56141 56584 0.998504 + . ID=CGI_10023344; scaffold1605 GLEAN mRNA 56602 68967 0.682759 + . ID=CGI_10023345; scaffold1605 TRF Tandem_Repeat 60865 60903 78 + . . scaffold1605 GLEAN promoter 72319 73318 0.788576 + . ID=CGI_10023346; scaffold1605 GLEAN mRNA 73319 76006 0.788576 + . ID=CGI_10023346; scaffold1605 GLEAN promoter 75053 76052 1 + . ID=CGI_10023347; scaffold1605 GLEAN mRNA 76053 81615 1 + . ID=CGI_10023347; scaffold1605 GLEAN promoter 84574 85573 0.910604 + . ID=CGI_10023348; scaffold1605 GLEAN mRNA 85574 101575 0.910604 + . ID=CGI_10023348; scaffold1605 WUBlastX LINE_Telomeric 97058 97381 35 + . . scaffold1605 GLEAN mRNA 108697 124090 0.99941 - . ID=CGI_10023349; scaffold1605 GLEAN promoter 123854 124853 0.544845 + . ID=CGI_10023350; scaffold1605 GLEAN promoter 124091 125090 0.99941 - . ID=CGI_10023349; scaffold1605 GLEAN mRNA 124854 130572 0.544845 + . ID=CGI_10023350; scaffold1605 TRF Tandem_Repeat 128892 128920 58 + . . scaffold1605 GLEAN promoter 129829 130828 0.600226 + . ID=CGI_10023351; scaffold1605 GLEAN mRNA 130829 151126 0.600226 + . ID=CGI_10023351; scaffold1605 TRF Tandem_Repeat 151984 152111 202 + . . scaffold1605 TRF Tandem_Repeat 153314 153355 84 + . . scaffold1605 TRF Tandem_Repeat 155812 155900 164 + . . scaffold1605 TRF Tandem_Repeat 156236 156414 295 + . . scaffold1605 GLEAN promoter 165486 166485 0.273274 + . ID=CGI_10023352; scaffold1605 GLEAN mRNA 166486 256508 0.273274 + . ID=CGI_10023352; scaffold1605 TRF Tandem_Repeat 207184 207220 74 + . . scaffold1605 GLEAN promoter 256458 257457 0.44789 + . ID=CGI_10023353; scaffold1605 GLEAN mRNA 257458 263522 0.44789 + . ID=CGI_10023353; scaffold1605 TRF Tandem_Repeat 258917 258965 98 + . . scaffold1605 TRF Tandem_Repeat 259922 259958 74 + . . scaffold1605 GLEAN promoter 265506 266505 0.661304 + . ID=CGI_10023354; scaffold1605 GLEAN mRNA 266506 271377 0.661304 + . ID=CGI_10023354; scaffold1605 GLEAN mRNA 273343 275603 0.999999 - . ID=CGI_10023355; scaffold1605 GLEAN promoter 275604 276603 0.999999 - . ID=CGI_10023355; scaffold1605 GLEAN mRNA 276405 286700 0.997947 - . ID=CGI_10023356; scaffold1605 TRF Tandem_Repeat 285343 285372 60 + . . scaffold1605 TRF Tandem_Repeat 285681 285738 116 + . . scaffold1605 GLEAN promoter 286701 287700 0.997947 - . ID=CGI_10023356; scaffold1605 GLEAN mRNA 292844 300858 0.618137 - . ID=CGI_10023357; scaffold1605 GLEAN promoter 300859 301858 0.618137 - . ID=CGI_10023357; scaffold1605 GLEAN promoter 302815 303814 0.999834 + . ID=CGI_10023358; scaffold1605 GLEAN mRNA 303815 319387 0.999834 + . ID=CGI_10023358; scaffold1605 TRF Tandem_Repeat 314679 314728 100 + . . scaffold1605 TRF Tandem_Repeat 315804 315837 50 + . . scaffold1605 TRF Tandem_Repeat 321359 321384 52 + . . scaffold1605 TRF Tandem_Repeat 321985 322014 51 + . . scaffold1605 TRF Tandem_Repeat 323064 323114 102 + . . scaffold1605 GLEAN promoter 334059 335058 0.804393 + . ID=CGI_10023359; scaffold1605 GLEAN mRNA 335059 358531 0.804393 + . ID=CGI_10023359; scaffold1605 GLEAN mRNA 361969 365966 1 - . ID=CGI_10023360; scaffold1605 GLEAN promoter 365967 366966 1 - . ID=CGI_10023360; scaffold1605 TRF Tandem_Repeat 367013 367230 153 + . . scaffold1605 TRF Tandem_Repeat 367289 367388 78 + . . scaffold1605 TRF Tandem_Repeat 367784 367912 102 + . . scaffold1605 GLEAN mRNA 372082 382712 1 - . ID=CGI_10023361; scaffold1605 TRF Tandem_Repeat 379923 379961 78 + . . scaffold1605 GLEAN promoter 382713 383712 1 - . ID=CGI_10023361; scaffold1605 GLEAN mRNA 384598 408044 0.498916 - . ID=CGI_10023362; scaffold1605 TRF Tandem_Repeat 394434 395084 1214 + . . scaffold1605 GLEAN promoter 407568 408567 1 + . ID=CGI_10023363; scaffold1605 GLEAN promoter 408045 409044 0.498916 - . ID=CGI_10023362; scaffold1605 GLEAN mRNA 408568 410288 1 + . ID=CGI_10023363; scaffold1605 TRF Tandem_Repeat 413604 413653 100 + . . scaffold1605 TRF Tandem_Repeat 414894 414936 86 + . . scaffold1605 GLEAN promoter 416090 417089 0.394042 + . ID=CGI_10023364; scaffold1605 GLEAN mRNA 417090 429495 0.394042 + . ID=CGI_10023364; scaffold1605 GLEAN mRNA 420278 423054 1 - . ID=CGI_10023365; scaffold1605 TRF Tandem_Repeat 420580 421086 447 + . . scaffold1605 TRF Tandem_Repeat 420580 421015 460 + . . scaffold1605 GLEAN promoter 423055 424054 1 - . ID=CGI_10023365; scaffold1605 TRF Tandem_Repeat 428334 428512 256 + . . scaffold1605 GLEAN promoter 436754 437753 0.966322 + . ID=CGI_10023367; scaffold1605 GLEAN mRNA 436945 439098 1 - . ID=CGI_10023366; scaffold1605 GLEAN mRNA 437754 447689 0.966322 + . ID=CGI_10023367; scaffold1605 GLEAN promoter 439099 440098 1 - . ID=CGI_10023366; scaffold1605 GLEAN mRNA 448930 451268 1 - . ID=CGI_10023368; scaffold1605 GLEAN promoter 451269 452268 1 - . ID=CGI_10023368; scaffold1605 TRF Tandem_Repeat 454466 454502 67 + . . scaffold1605 WUBlastX LINE_L1 455736 455825 22 - . . scaffold1605 WUBlastX LINE_L1-Tx1 455754 456011 25 - . . scaffold1605 WUBlastX LINE_L1 455807 456448 76 - . . scaffold1605 WUBlastX LINE_L1-Tx1 456008 456559 170 - . . scaffold1605 WUBlastX LINE_L1-Tx1 456014 456463 257 - . . scaffold1605 WUBlastX LINE_L1-Tx1 456457 456717 139 - . . scaffold1605 WUBlastX LINE_L1-Tx1 456614 456763 61 - . . scaffold1605 GLEAN mRNA 463463 475315 0.984678 - . ID=CGI_10023369; scaffold1605 TRF Tandem_Repeat 469958 470834 1368 + . . scaffold1605 TRF Tandem_Repeat 472667 473494 1217 + . . scaffold1605 GLEAN promoter 475316 476315 0.984678 - . ID=CGI_10023369; scaffold1605 TRF Tandem_Repeat 519202 519236 70 + . . scaffold1605 GLEAN promoter 551432 552431 1 + . ID=CGI_10023370; scaffold1605 GLEAN mRNA 552432 555663 1 + . ID=CGI_10023370; scaffold1605 GLEAN promoter 556671 557670 1 + . ID=CGI_10023371; scaffold1605 GLEAN mRNA 557671 558681 1 + . ID=CGI_10023371; scaffold1605 TRF Tandem_Repeat 562117 562176 120 + . . scaffold1605 GLEAN mRNA 562949 568597 0.998097 - . ID=CGI_10023372; scaffold1605 GLEAN promoter 565278 566277 0.999673 + . ID=CGI_10023373; scaffold1605 GLEAN mRNA 566278 571814 0.999673 + . ID=CGI_10023373; scaffold1605 GLEAN promoter 568598 569597 0.998097 - . ID=CGI_10023372; scaffold1605 GLEAN mRNA 573424 576440 1 - . ID=CGI_10023374; scaffold1605 GLEAN promoter 576441 577440 1 - . ID=CGI_10023374; scaffold1605 GLEAN promoter 577124 578123 0.836516 + . ID=CGI_10023375; scaffold1605 GLEAN mRNA 578124 579354 0.836516 + . ID=CGI_10023375; scaffold1605 GLEAN promoter 582258 583257 0.999922 + . ID=CGI_10023376; scaffold1605 GLEAN mRNA 583258 591937 0.999922 + . ID=CGI_10023376; scaffold1605 GLEAN mRNA 592428 598191 0.990881 - . ID=CGI_10023377; scaffold1605 GLEAN promoter 598192 599191 0.990881 - . ID=CGI_10023377; scaffold1605 WUBlastX LINE_L1-Tx1 598340 598666 118 + . . scaffold1605 GLEAN mRNA 600398 601579 1 - . ID=CGI_10023378; scaffold1605 GLEAN promoter 601580 602579 1 - . ID=CGI_10023378; scaffold1605 GLEAN mRNA 606395 617547 0.579601 - . ID=CGI_10023379; scaffold1605 GLEAN promoter 614425 615424 1 + . ID=CGI_10023380; scaffold1605 GLEAN mRNA 615425 624095 1 + . ID=CGI_10023380; scaffold1605 GLEAN promoter 617548 618547 0.579601 - . ID=CGI_10023379; scaffold1605 TRF Tandem_Repeat 619794 619986 289 + . . scaffold1605 TRF Tandem_Repeat 620387 620421 52 + . . scaffold1605 GLEAN promoter 624884 625883 0.836238 + . ID=CGI_10023381; scaffold1605 GLEAN mRNA 625884 630420 0.836238 + . ID=CGI_10023381; scaffold1605 TRF Tandem_Repeat 631492 631578 72 + . . scaffold1605 TRF Tandem_Repeat 636510 636552 77 + . . scaffold1605 TRF Tandem_Repeat 642029 642197 122 + . . scaffold1605 TRF Tandem_Repeat 642044 642197 245 + . . scaffold1605 TRF Tandem_Repeat 645245 645285 82 + . . scaffold1605 GLEAN promoter 646145 647144 0.999929 + . ID=CGI_10023382; scaffold1605 GLEAN mRNA 647145 656924 0.999929 + . ID=CGI_10023382; scaffold1605 TRF Tandem_Repeat 658271 658445 142 + . . scaffold1605 TRF Tandem_Repeat 658694 659009 379 + . . scaffold1605 TRF Tandem_Repeat 658702 659727 284 + . . scaffold1605 TRF Tandem_Repeat 658862 659623 535 + . . scaffold1605 TRF Tandem_Repeat 659016 659789 814 + . . scaffold1605 TRF Tandem_Repeat 659016 659789 937 + . . scaffold1605 GLEAN mRNA 661731 668124 0.999996 - . ID=CGI_10023383; scaffold1605 GLEAN promoter 668125 669124 0.999996 - . ID=CGI_10023383; scaffold1605 GLEAN mRNA 668313 673098 0.992768 - . ID=CGI_10023384; scaffold1605 GLEAN promoter 673099 674098 0.992768 - . ID=CGI_10023384; scaffold1605 GLEAN mRNA 677360 678838 0.998378 - . ID=CGI_10023385; scaffold1605 GLEAN promoter 678839 679838 0.998378 - . ID=CGI_10023385; scaffold1605 GLEAN promoter 682392 683391 0.99332 + . ID=CGI_10023386; scaffold1605 TRF Tandem_Repeat 682772 682833 108 + . . scaffold1605 GLEAN mRNA 683392 692390 0.99332 + . ID=CGI_10023386; scaffold1605 GLEAN mRNA 696278 739510 0.673314 - . ID=CGI_10023387; scaffold1605 TRF Tandem_Repeat 700116 700402 351 + . . scaffold1605 TRF Tandem_Repeat 710103 710171 138 + . . scaffold1605 TRF Tandem_Repeat 711804 711851 87 + . . scaffold1605 TRF Tandem_Repeat 722212 722298 72 + . . scaffold1605 GLEAN promoter 723330 724329 0.991906 + . ID=CGI_10023388; scaffold1605 GLEAN mRNA 724330 729039 0.991906 + . ID=CGI_10023388; scaffold1605 TRF Tandem_Repeat 730861 731008 81 + . . scaffold1605 TRF Tandem_Repeat 730935 731095 91 + . . scaffold1605 TRF Tandem_Repeat 730935 731046 76 + . . scaffold1605 TRF Tandem_Repeat 730964 731037 60 + . . scaffold1605 TRF Tandem_Repeat 730965 731033 52 + . . scaffold1605 WUBlastX DNA_hAT 731702 732067 122 - . . scaffold1605 GLEAN promoter 732968 733967 0.768707 + . ID=CGI_10023389; scaffold1605 GLEAN mRNA 733968 741632 0.768707 + . ID=CGI_10023389; scaffold1605 TRF Tandem_Repeat 737423 737456 61 + . . scaffold1605 GLEAN promoter 739511 740510 0.673314 - . ID=CGI_10023387; scaffold1605 GLEAN mRNA 744758 746657 0.999999 - . ID=CGI_10023390; scaffold1605 GLEAN promoter 746658 747657 0.999999 - . ID=CGI_10023390; scaffold1605 GLEAN mRNA 747357 754933 0.999999 - . ID=CGI_10023391; scaffold1605 GLEAN promoter 754934 755933 0.999999 - . ID=CGI_10023391; scaffold1605 GLEAN promoter 762013 763012 0.912508 + . ID=CGI_10023392; scaffold1605 GLEAN mRNA 763013 767437 0.912508 + . ID=CGI_10023392; scaffold1605 TRF Tandem_Repeat 775375 776180 865 + . . scaffold1605 GLEAN promoter 779717 780716 0.836191 + . ID=CGI_10023393; scaffold1605 GLEAN mRNA 780717 805704 0.836191 + . ID=CGI_10023393; scaffold1605 TRF Tandem_Repeat 796873 796935 126 + . . scaffold1605 TRF Tandem_Repeat 817511 817585 150 + . . scaffold1605 WUBlastX LINE_L1 826901 826954 20 + . . scaffold1605 WUBlastX LINE_L1-Tx1 826913 826954 20 + . . scaffold1605 WUBlastX LINE_L1-Tx1 827013 827237 21 + . . scaffold1605 WUBlastX LINE_L1-Tx1 827245 827412 47 + . . scaffold1605 WUBlastX LINE_L1 827302 827403 61 + . . scaffold1605 WUBlastX LINE_L1-Tx1 827390 828490 82 + . . scaffold1605 WUBlastX LINE_L1-Tx1 827465 828394 187 + . . scaffold1605 WUBlastX LINE_L1-Tx1 828384 828584 63 + . . scaffold1605 WUBlastX LINE_L1 828580 828987 82 + . . scaffold1605 WUBlastX LINE_L1-Tx1 828924 829265 59 + . . scaffold1605 WUBlastX LINE_L1 829011 829220 75 + . . scaffold1605 WUBlastX LINE_L1-Tx1 829414 829629 23 + . . scaffold1605 WUBlastX LINE_L2 831570 832592 185 - . . scaffold1605 WUBlastX LINE_L2 831570 832427 326 - . . scaffold1605 WUBlastX LINE_L2 831594 832781 51 - . . scaffold1606 GLEAN promoter 279 1278 1 + . ID=CGI_10000282; scaffold1606 GLEAN mRNA 1279 1659 1 + . ID=CGI_10000282; scaffold1607 GLEAN promoter 2926 3925 0.999103 + . ID=CGI_10001170; scaffold1607 GLEAN mRNA 3926 6926 0.999103 + . ID=CGI_10001170; scaffold1608 GLEAN mRNA 516 13891 0.330112 - . ID=CGI_10010666; scaffold1608 GLEAN promoter 6733 7732 0.999351 + . ID=CGI_10010667; scaffold1608 GLEAN mRNA 7733 27126 0.999351 + . ID=CGI_10010667; scaffold1608 GLEAN promoter 13892 14891 0.330112 - . ID=CGI_10010666; scaffold1608 TRF Tandem_Repeat 14081 14107 54 + . . scaffold1608 TRF Tandem_Repeat 20829 20892 65 + . . scaffold1608 TRF Tandem_Repeat 20829 20889 86 + . . scaffold1608 TRF Tandem_Repeat 20831 20889 100 + . . scaffold1608 TRF Tandem_Repeat 29808 29859 88 + . . scaffold1608 TRF Tandem_Repeat 30491 30525 70 + . . scaffold1608 GLEAN promoter 30988 31987 1 + . ID=CGI_10010668; scaffold1608 GLEAN mRNA 31988 43520 1 + . ID=CGI_10010668; scaffold1608 GLEAN mRNA 43846 45753 1 - . ID=CGI_10010669; scaffold1608 GLEAN promoter 45754 46753 1 - . ID=CGI_10010669; scaffold1608 GLEAN promoter 48257 49256 1 + . ID=CGI_10010671; scaffold1608 GLEAN mRNA 48448 49077 0.996819 - . ID=CGI_10010670; scaffold1608 GLEAN promoter 49078 50077 0.996819 - . ID=CGI_10010670; scaffold1608 GLEAN mRNA 49257 49835 1 + . ID=CGI_10010671; scaffold1608 TRF Tandem_Repeat 51356 51484 102 + . . scaffold1608 TRF Tandem_Repeat 51914 52008 81 + . . scaffold1608 GLEAN mRNA 53062 57256 1 - . ID=CGI_10010672; scaffold1608 GLEAN promoter 56853 57852 1 + . ID=CGI_10010673; scaffold1608 GLEAN promoter 57257 58256 1 - . ID=CGI_10010672; scaffold1608 GLEAN mRNA 57853 58491 1 + . ID=CGI_10010673; scaffold1608 GLEAN mRNA 59235 69733 1 - . ID=CGI_10010674; scaffold1608 TRF Tandem_Repeat 64069 64094 52 + . . scaffold1608 GLEAN promoter 69734 70733 1 - . ID=CGI_10010674; scaffold1608 GLEAN promoter 71122 72121 0.999999 + . ID=CGI_10010675; scaffold1608 GLEAN mRNA 72122 72385 0.999999 + . ID=CGI_10010675; scaffold1608 WUBlastX DNA_MuDR 72903 73385 23 + . . scaffold1608 WUBlastX DNA_MuDR 73089 73403 109 + . . scaffold1608 WUBlastX DNA_IS4EU 73544 73987 43 + . . scaffold1608 WUBlastX DNA_NOF 73721 73963 53 + . . scaffold1608 WUBlastX DNA_NOF 73993 74058 24 + . . scaffold1608 GLEAN promoter 74219 75218 1 + . ID=CGI_10010676; scaffold1608 GLEAN mRNA 75219 91136 1 + . ID=CGI_10010676; scaffold1608 TRF Tandem_Repeat 79189 79213 50 + . . scaffold1608 TRF Tandem_Repeat 80217 80241 50 + . . scaffold1608 TRF Tandem_Repeat 91504 91551 96 + . . scaffold1608 GLEAN mRNA 91683 92920 0.999999 - . ID=CGI_10010677; scaffold1608 GLEAN promoter 92921 93920 0.999999 - . ID=CGI_10010677; scaffold1608 TRF Tandem_Repeat 93770 93803 68 + . . scaffold1608 WUBlastX DNA_Crypton 96356 96838 57 + . . scaffold1608 GLEAN promoter 107771 108770 0.737683 + . ID=CGI_10010678; scaffold1608 GLEAN mRNA 108771 134587 0.737683 + . ID=CGI_10010678; scaffold1608 TRF Tandem_Repeat 109120 109189 140 + . . scaffold1608 TRF Tandem_Repeat 112246 112288 86 + . . scaffold1608 TRF Tandem_Repeat 126643 127548 1525 + . . scaffold1608 TRF Tandem_Repeat 127855 127955 66 + . . scaffold1608 TRF Tandem_Repeat 128757 128855 55 + . . scaffold1608 WUBlastX LTR_Gypsy 134350 134457 20 + . . scaffold1608 GLEAN mRNA 142802 144564 1 - . ID=CGI_10010679; scaffold1608 GLEAN promoter 144565 145564 1 - . ID=CGI_10010679; scaffold1608 GLEAN mRNA 157703 160389 1 - . ID=CGI_10010680; scaffold1608 GLEAN promoter 160390 161389 1 - . ID=CGI_10010680; scaffold1608 GLEAN promoter 180037 181036 1 + . ID=CGI_10010681; scaffold1608 GLEAN mRNA 181037 188549 1 + . ID=CGI_10010681; scaffold1608 TRF Tandem_Repeat 181966 182093 247 + . . scaffold1608 TRF Tandem_Repeat 194786 194893 153 + . . scaffold1608 GLEAN promoter 197197 198196 1 + . ID=CGI_10010682; scaffold1608 GLEAN mRNA 198197 204520 1 + . ID=CGI_10010682; scaffold1608 GLEAN mRNA 206214 207203 1 - . ID=CGI_10010683; scaffold1608 GLEAN promoter 207204 208203 1 - . ID=CGI_10010683; scaffold1608 TRF Tandem_Repeat 215737 215853 189 + . . scaffold1608 GLEAN mRNA 216736 217713 0.94835 - . ID=CGI_10010684; scaffold1608 GLEAN promoter 217714 218713 0.94835 - . ID=CGI_10010684; scaffold1608 GLEAN promoter 244081 245080 0.531613 + . ID=CGI_10010685; scaffold1608 GLEAN mRNA 245081 246547 0.531613 + . ID=CGI_10010685; scaffold1608 GLEAN mRNA 248360 261314 1 - . ID=CGI_10010686; scaffold1608 TRF Tandem_Repeat 253864 254352 513 + . . scaffold1608 TRF Tandem_Repeat 253892 254352 592 + . . scaffold1608 TRF Tandem_Repeat 254064 254352 245 + . . scaffold1608 GLEAN promoter 261315 262314 1 - . ID=CGI_10010686; scaffold1608 TRF Tandem_Repeat 263380 263436 105 + . . scaffold1608 TRF Tandem_Repeat 268121 268159 78 + . . scaffold1609 TRF Tandem_Repeat 1458 1508 93 + . . scaffold1609 TRF Tandem_Repeat 5114 5329 186 + . . scaffold1609 WUBlastX LTR_Ngaro 7073 7369 163 - . . scaffold1609 WUBlastX LTR_Ngaro 7486 7965 175 - . . scaffold1609 WUBlastX LTR_Ngaro 7956 8213 94 - . . scaffold1609 WUBlastX LTR_Ngaro 7959 8159 106 - . . scaffold1609 WUBlastX LTR_Ngaro 8165 8230 20 - . . scaffold1609 WUBlastX LTR_Ngaro 8232 9203 673 - . . scaffold1609 WUBlastX LTR_Ngaro 9203 9565 59 - . . scaffold1609 WUBlastX LTR_Ngaro 9203 9424 77 - . . scaffold1609 TRF Tandem_Repeat 9871 9953 70 + . . scaffold1609 TRF Tandem_Repeat 9878 9960 71 + . . scaffold1609 TRF Tandem_Repeat 10767 10878 91 + . . scaffold1609 WUBlastX LTR_Ngaro 11733 12734 332 - . . scaffold1609 WUBlastX LTR_Ngaro 12653 14209 1009 - . . scaffold1609 WUBlastX LTR_Ngaro 14395 14694 115 - . . scaffold1609 TRF Tandem_Repeat 17553 18215 906 + . . scaffold1609 WUBlastX DNA_IS4EU 19199 19672 77 + . . scaffold1609 TRF Tandem_Repeat 32550 32587 76 + . . scaffold1609 TRF Tandem_Repeat 83646 83696 50 + . . scaffold1609 TRF Tandem_Repeat 86374 86480 133 + . . scaffold1609 TRF Tandem_Repeat 93485 93575 137 + . . scaffold1609 TRF Tandem_Repeat 94509 94573 130 + . . scaffold1609 TRF Tandem_Repeat 94909 94955 94 + . . scaffold1609 GLEAN promoter 115125 116124 0.999675 + . ID=CGI_10010600; scaffold1609 GLEAN mRNA 116125 121219 0.999675 + . ID=CGI_10010600; scaffold1609 TRF Tandem_Repeat 125966 126258 366 + . . scaffold1609 TRF Tandem_Repeat 126022 126055 50 + . . scaffold1609 GLEAN promoter 127582 128581 0.999998 + . ID=CGI_10010601; scaffold1609 GLEAN mRNA 128582 145314 0.999998 + . ID=CGI_10010601; scaffold1609 TRF Tandem_Repeat 134789 134866 70 + . . scaffold1609 TRF Tandem_Repeat 134984 135025 84 + . . scaffold1609 TRF Tandem_Repeat 135812 135860 55 + . . scaffold1609 TRF Tandem_Repeat 135827 135860 59 + . . scaffold1609 GLEAN mRNA 144417 163840 0.83514 - . ID=CGI_10010602; scaffold1609 TRF Tandem_Repeat 151814 151860 94 + . . scaffold1609 TRF Tandem_Repeat 153764 153834 135 + . . scaffold1609 WUBlastX LTR_Gypsy 158513 159157 515 + . . scaffold1609 WUBlastX LTR_Gypsy 159151 160602 1370 + . . scaffold1609 WUBlastX LTR_Gypsy 159184 161556 995 + . . scaffold1609 WUBlastX LTR_Gypsy 160942 161712 425 + . . scaffold1609 GLEAN promoter 163841 164840 0.83514 - . ID=CGI_10010602; scaffold1609 WUBlastX LINE_RTE-BovB 168174 169226 201 + . . scaffold1609 WUBlastX LINE_RTE-BovB 168174 168668 256 + . . scaffold1609 GLEAN mRNA 178727 179242 0.999676 - . ID=CGI_10010603; scaffold1609 GLEAN promoter 179243 180242 0.999676 - . ID=CGI_10010603; scaffold1609 WUBlastX LINE_L1 183684 183791 20 + . . scaffold1609 WUBlastX LINE_RTE-RTE 183802 184404 110 + . . scaffold1609 WUBlastX LINE_L1-Tx1 183901 184413 212 + . . scaffold1609 WUBlastX LINE_L1-Tx1 184000 184413 310 + . . scaffold1609 WUBlastX LINE_L1-Tx1 184430 185641 396 + . . scaffold1609 WUBlastX LINE_L1-Tx1 185957 186463 32 + . . scaffold1609 WUBlastX LINE_L1-Tx1 186026 186298 39 + . . scaffold1609 GLEAN mRNA 193254 194537 0.82852 - . ID=CGI_10010605; scaffold1609 GLEAN promoter 194538 195537 0.82852 - . ID=CGI_10010605; scaffold1609 WUBlastX LINE_L1-Tx1 211533 212114 150 - . . scaffold1609 WUBlastX LINE_L1-Tx1 211845 212162 37 - . . scaffold1609 GLEAN promoter 216945 217944 0.910568 + . ID=CGI_10010606; scaffold1609 GLEAN mRNA 217945 222836 0.910568 + . ID=CGI_10010606; scaffold1609 TRF Tandem_Repeat 224061 224092 64 + . . scaffold1609 TRF Tandem_Repeat 231129 231161 66 + . . scaffold1609 TRF Tandem_Repeat 232192 232224 59 + . . scaffold1609 TRF Tandem_Repeat 232366 232419 108 + . . scaffold1609 TRF Tandem_Repeat 236973 237015 86 + . . scaffold1609 TRF Tandem_Repeat 237139 237179 73 + . . scaffold1609 GLEAN promoter 238891 239890 0.998414 + . ID=CGI_10010607; scaffold1609 GLEAN mRNA 239891 253366 0.998414 + . ID=CGI_10010607; scaffold1609 GLEAN mRNA 247311 248711 1 - . ID=CGI_10010608; scaffold1609 GLEAN promoter 248712 249711 1 - . ID=CGI_10010608; scaffold1609 GLEAN promoter 253527 254526 0.836758 + . ID=CGI_10010609; scaffold1609 GLEAN mRNA 254527 261301 0.836758 + . ID=CGI_10010609; scaffold1609 TRF Tandem_Repeat 260656 260836 107 + . . scaffold1609 GLEAN mRNA 263179 263502 0.724574 - . ID=CGI_10010610; scaffold1609 GLEAN promoter 263503 264502 0.724574 - . ID=CGI_10010610; scaffold1609 TRF Tandem_Repeat 267120 267404 132 + . . scaffold1609 GLEAN mRNA 269697 270113 0.649447 - . ID=CGI_10010611; scaffold1609 GLEAN promoter 270114 270779 0.649447 - . ID=CGI_10010611; scaffold161 WUBlastX DNA_hAT-Tip100 449 703 171 - . . scaffold161 WUBlastX DNA_hAT-Tip100 700 1023 131 - . . scaffold161 WUBlastX DNA_hAT-Tip100 1002 1562 115 - . . scaffold161 WUBlastX DNA_hAT-Tip100 1023 1394 160 - . . scaffold161 WUBlastX DNA_Crypton 7776 8822 188 - . . scaffold161 TRF Tandem_Repeat 10022 10070 53 + . . scaffold161 TRF Tandem_Repeat 10112 10244 77 + . . scaffold161 TRF Tandem_Repeat 10190 10270 63 + . . scaffold161 GLEAN promoter 13324 14323 1 + . ID=CGI_10008582; scaffold161 GLEAN mRNA 14324 26281 1 + . ID=CGI_10008582; scaffold161 GLEAN mRNA 20985 24168 0.836238 - . ID=CGI_10008583; scaffold161 GLEAN promoter 24169 25168 0.836238 - . ID=CGI_10008583; scaffold161 GLEAN promoter 26500 27499 0.722266 + . ID=CGI_10008584; scaffold161 GLEAN mRNA 27500 58943 0.722266 + . ID=CGI_10008584; scaffold161 TRF Tandem_Repeat 37325 37828 543 + . . scaffold161 TRF Tandem_Repeat 38793 38829 74 + . . scaffold161 TRF Tandem_Repeat 43213 43250 58 + . . scaffold161 TRF Tandem_Repeat 47762 47887 143 + . . scaffold161 TRF Tandem_Repeat 49515 49615 109 + . . scaffold161 TRF Tandem_Repeat 58324 58465 223 + . . scaffold161 TRF Tandem_Repeat 64227 67497 4558 + . . scaffold161 TRF Tandem_Repeat 64227 65343 1678 + . . scaffold161 TRF Tandem_Repeat 65368 66226 1411 + . . scaffold161 TRF Tandem_Repeat 66251 66860 886 + . . scaffold161 TRF Tandem_Repeat 66885 67497 937 + . . scaffold161 GLEAN promoter 68219 69218 0.998916 + . ID=CGI_10008585; scaffold161 GLEAN mRNA 69219 78128 0.998916 + . ID=CGI_10008585; scaffold161 TRF Tandem_Repeat 69343 69670 236 + . . scaffold161 TRF Tandem_Repeat 69438 69583 111 + . . scaffold161 TRF Tandem_Repeat 73139 73185 94 + . . scaffold161 GLEAN mRNA 77618 83188 0.990769 - . ID=CGI_10008586; scaffold161 GLEAN promoter 83189 84188 0.990769 - . ID=CGI_10008586; scaffold161 GLEAN promoter 94863 95862 0.999256 + . ID=CGI_10008588; scaffold161 GLEAN mRNA 95285 104821 0.500316 - . ID=CGI_10008587; scaffold161 GLEAN mRNA 95863 96042 0.999256 + . ID=CGI_10008588; scaffold161 TRF Tandem_Repeat 98760 98889 233 + . . scaffold161 TRF Tandem_Repeat 98921 99484 950 + . . scaffold161 TRF Tandem_Repeat 100283 100590 249 + . . scaffold161 TRF Tandem_Repeat 100386 100520 91 + . . scaffold161 TRF Tandem_Repeat 100589 100756 266 + . . scaffold161 TRF Tandem_Repeat 100913 101027 88 + . . scaffold161 GLEAN promoter 104822 105821 0.500316 - . ID=CGI_10008587; scaffold161 TRF Tandem_Repeat 105225 105951 1202 + . . scaffold161 GLEAN promoter 105688 106687 0.832376 + . ID=CGI_10008589; scaffold161 GLEAN mRNA 106688 117037 0.832376 + . ID=CGI_10008589; scaffold161 WUBlastX LTR_Gypsy 110020 110184 26 + . . scaffold161 WUBlastX LTR_Gypsy 110303 111367 139 + . . scaffold161 WUBlastX LTR_DIRS 110495 112582 1405 + . . scaffold161 WUBlastX LTR_DIRS 112465 112689 133 + . . scaffold161 GLEAN promoter 119532 120531 0.924226 + . ID=CGI_10008590; scaffold161 GLEAN mRNA 120532 120693 0.924226 + . ID=CGI_10008590; scaffold161 GLEAN promoter 131164 132163 0.998052 + . ID=CGI_10008591; scaffold161 GLEAN mRNA 132164 133369 0.998052 + . ID=CGI_10008591; scaffold161 GLEAN promoter 132674 133673 0.998558 + . ID=CGI_10008592; scaffold161 GLEAN mRNA 133674 134174 0.998558 + . ID=CGI_10008592; scaffold161 TRF Tandem_Repeat 180084 181001 1346 + . . scaffold161 GLEAN promoter 183304 184303 0.451001 + . ID=CGI_10008593; scaffold161 GLEAN mRNA 184304 210063 0.451001 + . ID=CGI_10008593; scaffold161 TRF Tandem_Repeat 187499 188370 908 + . . scaffold161 TRF Tandem_Repeat 189690 190982 1726 + . . scaffold1610 TRF Tandem_Repeat 1272 1304 66 + . . scaffold1610 TRF Tandem_Repeat 1393 1418 52 + . . scaffold1610 TRF Tandem_Repeat 3864 3895 64 + . . scaffold1610 TRF Tandem_Repeat 14248 14278 62 + . . scaffold1610 TRF Tandem_Repeat 17612 17655 88 + . . scaffold1610 TRF Tandem_Repeat 17835 17891 60 + . . scaffold1610 TRF Tandem_Repeat 17835 17899 67 + . . scaffold1610 TRF Tandem_Repeat 17843 17906 58 + . . scaffold1610 GLEAN mRNA 19018 34767 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 22722 22760 78 + . . scaffold1610 TRF Tandem_Repeat 26628 26677 100 + . . scaffold1610 TRF Tandem_Repeat 26677 26716 80 + . . scaffold1610 TRF Tandem_Repeat 27698 27747 100 + . . scaffold1610 TRF Tandem_Repeat 29808 29889 119 + . . scaffold1610 TRF Tandem_Repeat 29808 29889 137 + . . scaffold1610 TRF Tandem_Repeat 33480 33512 50 + . . scaffold1610 TRF Tandem_Repeat 33827 33894 136 + . . scaffold1610 TRF Tandem_Repeat 33979 34027 98 + . . scaffold1610 GLEAN promoter 34768 35767 0.948802 - . ID=CGI_10016490; scaffold1610 TRF Tandem_Repeat 36134 36163 51 + . . scaffold1610 TRF Tandem_Repeat 36571 36603 66 + . . scaffold1610 GLEAN promoter 36590 37589 1 + . ID=CGI_10016491; scaffold1610 GLEAN mRNA 37590 41814 1 + . ID=CGI_10016491; scaffold1610 TRF Tandem_Repeat 40369 40429 122 + . . scaffold1610 GLEAN mRNA 45729 62721 0.760342 - . ID=CGI_10016492; scaffold1610 TRF Tandem_Repeat 49366 50097 975 + . . scaffold1610 TRF Tandem_Repeat 51448 51501 74 + . . scaffold1610 TRF Tandem_Repeat 62063 62123 50 + . . scaffold1610 GLEAN promoter 62090 63089 0.711805 + . ID=CGI_10016493; scaffold1610 GLEAN promoter 62722 63721 0.760342 - . ID=CGI_10016492; scaffold1610 TRF Tandem_Repeat 63007 63055 80 + . . scaffold1610 GLEAN mRNA 63090 69258 0.711805 + . ID=CGI_10016493; scaffold1610 WUBlastX LTR_Gypsy 86757 88523 1006 + . . scaffold1610 TRF Tandem_Repeat 92971 93030 111 + . . scaffold1610 WUBlastX LINE_L2 96865 97284 202 - . . scaffold1610 TRF Tandem_Repeat 101744 101792 89 + . . scaffold1610 TRF Tandem_Repeat 108867 108902 72 + . . scaffold1610 GLEAN promoter 108875 109874 0.997327 + . ID=CGI_10016494; scaffold1610 GLEAN mRNA 109875 112959 0.997327 + . ID=CGI_10016494; scaffold1610 GLEAN promoter 117855 118854 1 + . ID=CGI_10016495; scaffold1610 GLEAN mRNA 118855 124630 1 + . ID=CGI_10016495; scaffold1610 TRF Tandem_Repeat 119334 119393 54 + . . scaffold1610 GLEAN mRNA 126142 129353 0.593391 - . ID=CGI_10016496; scaffold1610 GLEAN promoter 129354 130353 0.593391 - . ID=CGI_10016496; scaffold1610 GLEAN mRNA 133732 134220 0.836238 - . ID=CGI_10016497; scaffold1610 GLEAN promoter 134221 135220 0.836238 - . ID=CGI_10016497; scaffold1610 TRF Tandem_Repeat 135662 135725 128 + . . scaffold1610 WUBlastX RC_Helitron 151266 151904 23 - . . scaffold1610 WUBlastX RC_Helitron 151374 151976 271 - . . scaffold1610 WUBlastX RC_Helitron 151860 152993 225 - . . scaffold1610 WUBlastX RC_Helitron 152115 152819 233 - . . scaffold1610 TRF Tandem_Repeat 153232 153529 311 + . . scaffold1610 TRF Tandem_Repeat 153298 153477 279 + . . scaffold1610 TRF Tandem_Repeat 153487 153558 119 + . . scaffold1610 TRF Tandem_Repeat 153491 153589 94 + . . scaffold1610 GLEAN mRNA 167179 184418 1 - . ID=CGI_10016498; scaffold1610 TRF Tandem_Repeat 177671 177714 61 + . . scaffold1610 TRF Tandem_Repeat 181880 182202 173 + . . scaffold1610 GLEAN promoter 184419 185418 1 - . ID=CGI_10016498; scaffold1610 GLEAN promoter 188248 189247 1 + . ID=CGI_10016499; scaffold1610 GLEAN mRNA 189248 195977 1 + . ID=CGI_10016499; scaffold1610 TRF Tandem_Repeat 203726 203761 72 + . . scaffold1610 TRF Tandem_Repeat 210512 210542 53 + . . scaffold1610 GLEAN promoter 214007 215006 0.62189 + . ID=CGI_10016500; scaffold1610 GLEAN mRNA 215007 217133 0.62189 + . ID=CGI_10016500; scaffold1610 GLEAN promoter 216212 217211 0.572471 + . ID=CGI_10016501; scaffold1610 GLEAN mRNA 217212 224112 0.572471 + . ID=CGI_10016501; scaffold1610 TRF Tandem_Repeat 218010 218042 59 + . . scaffold1610 GLEAN promoter 223530 224529 0.999992 + . ID=CGI_10016502; scaffold1610 GLEAN mRNA 224530 225248 0.999992 + . ID=CGI_10016502; scaffold1610 GLEAN promoter 227132 228131 0.862915 + . ID=CGI_10016503; scaffold1610 GLEAN mRNA 228132 243894 0.862915 + . ID=CGI_10016503; scaffold1610 WUBlastX DNA_Kolobok-IS4 229664 229867 44 + . . scaffold1610 TRF Tandem_Repeat 232632 232691 56 + . . scaffold1610 TRF Tandem_Repeat 232641 232691 66 + . . scaffold1610 TRF Tandem_Repeat 232646 232690 65 + . . scaffold1610 TRF Tandem_Repeat 238453 238497 90 + . . scaffold1610 GLEAN mRNA 244604 267221 0.51314 - . ID=CGI_10016504; scaffold1610 TRF Tandem_Repeat 265847 265904 116 + . . scaffold1610 TRF Tandem_Repeat 265951 265978 56 + . . scaffold1610 GLEAN promoter 267222 268221 0.51314 - . ID=CGI_10016504; scaffold1610 GLEAN promoter 268543 269542 0.999984 + . ID=CGI_10016505; scaffold1610 TRF Tandem_Repeat 268873 268927 110 + . . scaffold1610 GLEAN mRNA 269543 270739 0.999984 + . ID=CGI_10016505; scaffold1610 GLEAN mRNA 273690 282502 1 - . ID=CGI_10016506; scaffold1610 TRF Tandem_Repeat 275940 276001 124 + . . scaffold1610 TRF Tandem_Repeat 277727 277784 116 + . . scaffold1610 GLEAN promoter 281618 282617 1 + . ID=CGI_10016507; scaffold1610 GLEAN promoter 282503 283502 1 - . ID=CGI_10016506; scaffold1610 GLEAN mRNA 282618 300563 1 + . ID=CGI_10016507; scaffold1610 TRF Tandem_Repeat 284498 284547 57 + . . scaffold1610 TRF Tandem_Repeat 284498 284547 55 + . . scaffold1610 TRF Tandem_Repeat 284571 285364 1097 + . . scaffold1610 TRF Tandem_Repeat 298067 298919 1016 + . . scaffold1610 TRF Tandem_Repeat 298941 299312 488 + . . scaffold1610 GLEAN mRNA 302620 303624 0.994697 - . ID=CGI_10016508; scaffold1610 GLEAN promoter 303625 304624 0.994697 - . ID=CGI_10016508; scaffold1610 GLEAN mRNA 305528 306532 0.59015 - . ID=CGI_10016509; scaffold1610 GLEAN promoter 306194 307193 0.999415 + . ID=CGI_10016510; scaffold1610 GLEAN promoter 306533 307532 0.59015 - . ID=CGI_10016509; scaffold1610 GLEAN mRNA 307194 330954 0.999415 + . ID=CGI_10016510; scaffold1610 TRF Tandem_Repeat 317751 317785 61 + . . scaffold1610 TRF Tandem_Repeat 317955 319154 1845 + . . scaffold1610 TRF Tandem_Repeat 330596 330637 84 + . . scaffold1610 GLEAN mRNA 332382 334144 1 - . ID=CGI_10016511; scaffold1610 GLEAN promoter 334145 335144 1 - . ID=CGI_10016511; scaffold1610 GLEAN promoter 343012 344011 0.544498 + . ID=CGI_10016512; scaffold1610 GLEAN mRNA 344012 346735 0.544498 + . ID=CGI_10016512; scaffold1610 TRF Tandem_Repeat 345490 345537 96 + . . scaffold1610 GLEAN promoter 359144 360143 0.654084 + . ID=CGI_10016513; scaffold1610 GLEAN mRNA 360144 380859 0.654084 + . ID=CGI_10016513; scaffold1610 TRF Tandem_Repeat 361636 361688 106 + . . scaffold1610 GLEAN mRNA 366220 373754 0.681104 - . ID=CGI_10016514; scaffold1610 GLEAN promoter 373755 374754 0.681104 - . ID=CGI_10016514; scaffold1610 GLEAN promoter 382240 383239 0.991151 + . ID=CGI_10016515; scaffold1610 GLEAN mRNA 383240 385042 0.991151 + . ID=CGI_10016515; scaffold1610 TRF Tandem_Repeat 388706 388749 88 + . . scaffold1610 TRF Tandem_Repeat 389219 389274 112 + . . scaffold1610 TRF Tandem_Repeat 406200 406249 100 + . . scaffold1610 TRF Tandem_Repeat 407834 407903 122 + . . scaffold1610 TRF Tandem_Repeat 408453 408502 50 + . . scaffold1610 TRF Tandem_Repeat 410984 411058 143 + . . scaffold1610 TRF Tandem_Repeat 411835 411908 58 + . . scaffold1610 TRF Tandem_Repeat 412175 412625 242 + . . scaffold1610 TRF Tandem_Repeat 412396 412712 243 + . . scaffold1610 TRF Tandem_Repeat 415932 415971 71 + . . scaffold1610 GLEAN promoter 419199 420198 0.999676 + . ID=CGI_10016516; scaffold1610 GLEAN mRNA 420199 428285 0.999676 + . ID=CGI_10016516; scaffold1610 TRF Tandem_Repeat 426359 427155 1011 + . . scaffold1610 TRF Tandem_Repeat 438113 438153 82 + . . scaffold1610 WUBlastX LTR_Ngaro 448702 449388 465 - . . scaffold1610 WUBlastX LTR_Ngaro 449474 450208 111 - . . scaffold1610 WUBlastX LTR_Ngaro 449642 450091 217 - . . scaffold1610 WUBlastX LTR_Ngaro 449696 450250 177 - . . scaffold1610 WUBlastX LINE_CR1-L2 459166 459336 60 + . . scaffold1610 WUBlastX LINE_CR1-L2 459248 459541 118 + . . scaffold1610 WUBlastX LINE_CR1 459269 459649 87 + . . scaffold1610 WUBlastX LINE_L2 459308 459538 141 + . . scaffold1610 WUBlastX LINE_L1-Tx1 461399 462157 90 + . . scaffold1610 WUBlastX LINE_L1-Tx1 461552 462628 169 + . . scaffold1610 WUBlastX LINE_L1 462703 463122 103 + . . scaffold1610 WUBlastX LINE_L1-Tx1 462790 463257 137 + . . scaffold1610 WUBlastX LINE_Penelope 463903 464490 153 - . . scaffold1611 GLEAN mRNA 1263 9963 0.351466 - . ID=CGI_10014322; scaffold1611 TRF Tandem_Repeat 3681 3707 54 + . . scaffold1611 GLEAN promoter 9964 10963 0.351466 - . ID=CGI_10014322; scaffold1611 GLEAN mRNA 21601 35288 0.542241 - . ID=CGI_10014323; scaffold1611 GLEAN promoter 35289 36288 0.542241 - . ID=CGI_10014323; scaffold1611 TRF Tandem_Repeat 35848 35889 75 + . . scaffold1611 TRF Tandem_Repeat 49761 49824 92 + . . scaffold1611 WUBlastX DNA_En-Spm 51429 52019 112 + . . scaffold1611 WUBlastX DNA_En-Spm 51588 52004 187 + . . scaffold1611 WUBlastX DNA_En-Spm 51952 53340 954 + . . scaffold1611 GLEAN promoter 52672 53671 0.588517 + . ID=CGI_10014324; scaffold1611 GLEAN mRNA 53672 56015 0.588517 + . ID=CGI_10014324; scaffold1611 TRF Tandem_Repeat 54808 54834 54 + . . scaffold1611 GLEAN mRNA 61530 69027 1 - . ID=CGI_10014325; scaffold1611 GLEAN promoter 69028 70027 1 - . ID=CGI_10014325; scaffold1611 WUBlastX LINE_L2 78359 78916 42 - . . scaffold1611 WUBlastX LINE_CR1-L2 78395 78772 84 - . . scaffold1611 WUBlastX LINE_CR1-L2 78395 78856 71 - . . scaffold1611 WUBlastX LINE_RTE-X 79709 80305 62 + . . scaffold1611 WUBlastX LINE_L1-Tx1 79816 79959 68 + . . scaffold1611 WUBlastX LINE_RTE-X 79976 80305 97 + . . scaffold1611 WUBlastX LINE_RTE-X 80266 80802 92 + . . scaffold1611 WUBlastX LINE_CR1 80302 80973 30 + . . scaffold1611 WUBlastX LINE_RTE-X 80302 80721 113 + . . scaffold1611 WUBlastX LINE_L2 82415 82912 193 + . . scaffold1611 WUBlastX LINE_CR1-L2 82415 83056 67 + . . scaffold1611 TRF Tandem_Repeat 100734 100763 60 + . . scaffold1611 TRF Tandem_Repeat 110103 110161 118 + . . scaffold1611 WUBlastX LINE_RTE-BovB 114102 114332 93 + . . scaffold1611 TRF Tandem_Repeat 115081 115131 61 + . . scaffold1611 TRF Tandem_Repeat 115316 117123 2058 + . . scaffold1611 TRF Tandem_Repeat 132427 132457 62 + . . scaffold1611 WUBlastX LTR_Pao 139000 140454 329 + . . scaffold1611 WUBlastX LTR_Pao 139219 144912 4008 + . . scaffold1611 TRF Tandem_Repeat 153072 153125 108 + . . scaffold1611 WUBlastX DNA_Kolobok-Hyd 160848 160904 32 + . . scaffold1611 WUBlastX DNA_Kolobok-Hyd 161454 161906 52 + . . scaffold1611 WUBlastX DNA_Kolobok-Hyd 161460 161804 55 + . . scaffold1611 GLEAN promoter 163027 164026 0.999064 + . ID=CGI_10014326; scaffold1611 GLEAN mRNA 164027 164311 0.999064 + . ID=CGI_10014326; scaffold1611 TRF Tandem_Repeat 165251 166102 1260 + . . scaffold1611 TRF Tandem_Repeat 165261 166102 922 + . . scaffold1611 TRF Tandem_Repeat 165261 166102 963 + . . scaffold1611 GLEAN mRNA 177082 178986 0.998983 - . ID=CGI_10014327; scaffold1611 GLEAN promoter 178987 179986 0.998983 - . ID=CGI_10014327; scaffold1611 TRF Tandem_Repeat 178995 179338 580 + . . scaffold1611 TRF Tandem_Repeat 197594 197781 82 + . . scaffold1611 TRF Tandem_Repeat 198818 198858 73 + . . scaffold1611 TRF Tandem_Repeat 199191 199222 64 + . . scaffold1611 TRF Tandem_Repeat 199792 199969 80 + . . scaffold1611 TRF Tandem_Repeat 199841 199969 77 + . . scaffold1611 TRF Tandem_Repeat 220900 221003 147 + . . scaffold1611 TRF Tandem_Repeat 222861 222888 56 + . . scaffold1611 GLEAN mRNA 226808 268846 0.992087 - . ID=CGI_10014328; scaffold1611 TRF Tandem_Repeat 235477 235527 102 + . . scaffold1611 TRF Tandem_Repeat 243419 243500 62 + . . scaffold1611 TRF Tandem_Repeat 249859 249901 86 + . . scaffold1611 TRF Tandem_Repeat 250226 250262 74 + . . scaffold1611 GLEAN promoter 268847 269846 0.992087 - . ID=CGI_10014328; scaffold1611 GLEAN mRNA 271252 281952 0.993128 - . ID=CGI_10014329; scaffold1611 TRF Tandem_Repeat 275911 275955 90 + . . scaffold1611 TRF Tandem_Repeat 277696 278142 619 + . . scaffold1611 GLEAN promoter 281953 282952 0.993128 - . ID=CGI_10014329; scaffold1611 GLEAN promoter 282887 283886 1 + . ID=CGI_10014330; scaffold1611 GLEAN mRNA 283887 286539 1 + . ID=CGI_10014330; scaffold1611 GLEAN promoter 287418 288417 0.888718 + . ID=CGI_10014331; scaffold1611 GLEAN mRNA 288418 294713 0.888718 + . ID=CGI_10014331; scaffold1611 TRF Tandem_Repeat 296578 296666 151 + . . scaffold1611 GLEAN promoter 296623 297622 0.379952 + . ID=CGI_10014332; scaffold1611 GLEAN mRNA 297623 328864 0.379952 + . ID=CGI_10014332; scaffold1611 TRF Tandem_Repeat 297896 297953 116 + . . scaffold1611 TRF Tandem_Repeat 298475 298696 426 + . . scaffold1611 TRF Tandem_Repeat 298746 298910 222 + . . scaffold1611 TRF Tandem_Repeat 320736 320924 141 + . . scaffold1611 TRF Tandem_Repeat 320745 320880 119 + . . scaffold1611 TRF Tandem_Repeat 320763 320924 114 + . . scaffold1611 TRF Tandem_Repeat 327979 328038 111 + . . scaffold1611 GLEAN mRNA 335434 351546 0.824818 - . ID=CGI_10014333; scaffold1611 GLEAN promoter 351547 352546 0.824818 - . ID=CGI_10014333; scaffold1611 TRF Tandem_Repeat 357467 357529 126 + . . scaffold1611 TRF Tandem_Repeat 357711 357782 144 + . . scaffold1611 TRF Tandem_Repeat 358325 358418 97 + . . scaffold1611 TRF Tandem_Repeat 358336 358425 52 + . . scaffold1611 GLEAN promoter 360117 361116 0.975667 + . ID=CGI_10014334; scaffold1611 GLEAN mRNA 361117 373640 0.975667 + . ID=CGI_10014334; scaffold1611 TRF Tandem_Repeat 363715 363758 88 + . . scaffold1611 WUBlastX DNA_TcMar-Fot1 364953 365444 83 - . . scaffold1611 WUBlastX DNA_TcMar-Fot1 365040 365453 308 - . . scaffold1611 WUBlastX DNA_TcMar-Fot1 365470 366165 420 - . . scaffold1611 GLEAN promoter 382023 383022 0.722624 + . ID=CGI_10014335; scaffold1611 GLEAN mRNA 383023 384978 0.722624 + . ID=CGI_10014335; scaffold1611 TRF Tandem_Repeat 391529 391646 157 + . . scaffold1611 TRF Tandem_Repeat 393346 393530 82 + . . scaffold1611 TRF Tandem_Repeat 394033 394058 52 + . . scaffold1612 WUBlastX DNA_Sola 23 760 96 - . . scaffold1612 WUBlastX DNA_Sola 10108 10434 30 - . . scaffold1612 WUBlastX DNA_Sola 10162 10617 138 - . . scaffold1612 WUBlastX DNA_Sola 10614 11813 151 - . . scaffold1613 GLEAN promoter 628 1627 0.999019 + . ID=CGI_10000905; scaffold1613 GLEAN mRNA 1628 11706 0.999019 + . ID=CGI_10000905; scaffold1614 GLEAN promoter 2125 3124 0.879402 + . ID=CGI_10000863; scaffold1614 GLEAN mRNA 3125 10118 0.879402 + . ID=CGI_10000863; scaffold1615 WUBlastX DNA_Harbinger 1539 1700 66 - . . scaffold1615 TRF Tandem_Repeat 3740 3796 51 + . . scaffold1615 TRF Tandem_Repeat 4309 4458 266 + . . scaffold1615 WUBlastX LTR_Gypsy 4469 4795 122 - . . scaffold1615 WUBlastX LTR_Gypsy 4732 5028 124 - . . scaffold1615 WUBlastX LTR_Gypsy-Cigr 4789 5028 131 - . . scaffold1615 WUBlastX LTR_Gypsy 4831 5028 144 - . . scaffold1615 WUBlastX LTR_Gypsy 5010 5141 43 - . . scaffold1615 WUBlastX LTR_Gypsy 5076 5141 56 - . . scaffold1615 TRF Tandem_Repeat 8692 8742 57 + . . scaffold1615 TRF Tandem_Repeat 11014 11063 55 + . . scaffold1615 TRF Tandem_Repeat 11439 11484 92 + . . scaffold1616 TRF Tandem_Repeat 9285 9365 153 + . . scaffold1616 TRF Tandem_Repeat 12314 12387 51 + . . scaffold1616 TRF Tandem_Repeat 13365 13396 64 + . . scaffold1616 TRF Tandem_Repeat 13394 13478 152 + . . scaffold1616 TRF Tandem_Repeat 20663 20707 90 + . . scaffold1616 WUBlastX LTR_Ngaro 22710 23447 93 + . . scaffold1616 WUBlastX LTR_Ngaro 23049 23594 141 + . . scaffold1616 WUBlastX LTR_Ngaro 23614 24288 308 + . . scaffold1616 WUBlastX LTR_Ngaro 23695 24249 329 + . . scaffold1616 WUBlastX LTR_Ngaro 23716 24498 200 + . . scaffold1616 WUBlastX LTR_Ngaro 24370 24573 96 + . . scaffold1616 WUBlastX LTR_Ngaro 24379 24540 110 + . . scaffold1616 TRF Tandem_Repeat 29850 29899 66 + . . scaffold1616 WUBlastX LTR_Ngaro 37610 37798 44 - . . scaffold1616 WUBlastX LTR_Ngaro 37631 37768 71 - . . scaffold1616 WUBlastX LTR_Ngaro 38006 38170 40 - . . scaffold1616 WUBlastX LTR_Ngaro 38129 38419 44 - . . scaffold1616 WUBlastX LTR_Ngaro 38386 39042 530 - . . scaffold1616 WUBlastX LTR_Ngaro 39089 39928 532 - . . scaffold1616 WUBlastX LTR_Ngaro 40341 40796 49 - . . scaffold1616 WUBlastX LTR_Ngaro 40359 40631 53 - . . scaffold1616 TRF Tandem_Repeat 45447 45475 58 + . . scaffold1616 TRF Tandem_Repeat 45473 45530 116 + . . scaffold1616 GLEAN promoter 45510 46509 0.999985 + . ID=CGI_10009075; scaffold1616 GLEAN mRNA 46510 47214 0.999985 + . ID=CGI_10009075; scaffold1616 TRF Tandem_Repeat 49740 49774 70 + . . scaffold1616 GLEAN promoter 55395 56394 0.569133 + . ID=CGI_10009076; scaffold1616 GLEAN mRNA 56395 104736 0.569133 + . ID=CGI_10009076; scaffold1616 WUBlastX LINE_Penelope 59756 60031 23 - . . scaffold1616 WUBlastX LINE_Penelope 60043 60405 29 - . . scaffold1616 WUBlastX LINE_Penelope 60175 60624 124 - . . scaffold1616 WUBlastX LINE_Penelope 60431 60730 46 - . . scaffold1616 WUBlastX LINE_RTE-X 62652 63092 57 + . . scaffold1616 WUBlastX LINE_RTE-X 62658 62984 97 + . . scaffold1616 WUBlastX LINE_L2 69901 70584 107 - . . scaffold1616 WUBlastX LINE_L2 70024 70686 49 - . . scaffold1616 WUBlastX LINE_L1-Tx1 72922 73506 31 - . . scaffold1616 WUBlastX LINE_L1-Tx1 73015 73506 44 - . . scaffold1616 TRF Tandem_Repeat 87319 87400 58 + . . scaffold1616 WUBlastX LTR_DIRS 91411 91638 50 + . . scaffold1616 WUBlastX LTR_DIRS 91504 91638 57 + . . scaffold1616 WUBlastX LTR_ERVL 91553 92269 89 + . . scaffold1616 WUBlastX LTR_DIRS 91676 93766 513 + . . scaffold1616 WUBlastX LTR_DIRS 91700 93172 834 + . . scaffold1616 WUBlastX LTR_DIRS 93787 94353 264 + . . scaffold1616 TRF Tandem_Repeat 100643 101566 1266 + . . scaffold1616 WUBlastX LINE_R1 105318 105395 25 + . . scaffold1616 WUBlastX LINE_L1-Tx1 105366 105404 29 + . . scaffold1616 WUBlastX LINE_DRE 105501 105587 22 + . . scaffold1616 WUBlastX LINE_L2 105858 107399 203 + . . scaffold1616 WUBlastX LINE_RTE-X 106095 107765 915 + . . scaffold1616 WUBlastX LINE_RTE-X 107743 108132 103 + . . scaffold1616 GLEAN mRNA 116981 119030 1 - . ID=CGI_10009077; scaffold1616 GLEAN promoter 119031 120030 1 - . ID=CGI_10009077; scaffold1616 TRF Tandem_Repeat 125285 125323 51 + . . scaffold1616 TRF Tandem_Repeat 125441 125588 152 + . . scaffold1616 WUBlastX LINE_Penelope 126516 127016 69 + . . scaffold1616 WUBlastX LINE_Penelope 126528 127127 63 + . . scaffold1616 TRF Tandem_Repeat 161873 161910 51 + . . scaffold1616 TRF Tandem_Repeat 162042 162709 970 + . . scaffold1616 TRF Tandem_Repeat 178598 178644 58 + . . scaffold1616 TRF Tandem_Repeat 180055 180102 96 + . . scaffold1616 TRF Tandem_Repeat 180102 180149 78 + . . scaffold1616 GLEAN promoter 185394 186393 0.48977 + . ID=CGI_10009078; scaffold1616 GLEAN mRNA 186394 205716 0.48977 + . ID=CGI_10009078; scaffold1616 GLEAN promoter 208780 209779 0.999812 + . ID=CGI_10009079; scaffold1616 GLEAN mRNA 209780 210655 0.999812 + . ID=CGI_10009079; scaffold1616 WUBlastX DNA_Academ 218176 218253 30 + . . scaffold1616 WUBlastX DNA_Academ 218249 218500 183 + . . scaffold1616 WUBlastX DNA_Academ 218536 219003 187 + . . scaffold1616 WUBlastX DNA_Academ 218930 219619 225 + . . scaffold1616 WUBlastX DNA_Academ 218933 219454 258 + . . scaffold1616 TRF Tandem_Repeat 221402 222502 1503 + . . scaffold1617 TRF Tandem_Repeat 2440 2509 115 + . . scaffold1617 WUBlastX LTR_DIRS 5635 5913 36 + . . scaffold1617 WUBlastX LTR_DIRS 6124 6261 54 + . . scaffold1618 GLEAN mRNA 163 9639 0.999999 - . ID=CGI_10001104; scaffold1618 GLEAN promoter 9640 10639 0.999999 - . ID=CGI_10001104; scaffold1619 WUBlastX LINE_L1-Tx1 8682 8798 52 - . . scaffold1619 WUBlastX LINE_L1 8697 8888 39 - . . scaffold1619 WUBlastX LINE_L1 8933 9469 24 - . . scaffold1619 WUBlastX LINE_L1-Tx1 8990 9421 217 - . . scaffold1619 WUBlastX LINE_L1 9514 9582 26 - . . scaffold1619 WUBlastX LINE_L1 9526 10383 87 - . . scaffold1619 WUBlastX LINE_L1-Tx1 9901 10530 200 - . . scaffold1619 WUBlastX LINE_L1-Tx1 22798 22914 52 - . . scaffold1619 WUBlastX LINE_L1 22813 23004 39 - . . scaffold1619 WUBlastX LINE_L1 23049 23585 24 - . . scaffold1619 WUBlastX LINE_L1-Tx1 23106 23537 217 - . . scaffold1619 WUBlastX LINE_L1 23630 23698 26 - . . scaffold1619 WUBlastX LINE_L1 23642 24499 87 - . . scaffold1619 WUBlastX LINE_L1-Tx1 24017 24646 200 - . . scaffold1619 GLEAN mRNA 30125 39818 0.966401 - . ID=CGI_10010216; scaffold1619 TRF Tandem_Repeat 32372 32401 60 + . . scaffold1619 GLEAN promoter 39819 40818 0.966401 - . ID=CGI_10010216; scaffold1619 TRF Tandem_Repeat 49382 49419 58 + . . scaffold1619 TRF Tandem_Repeat 52981 53019 51 + . . scaffold1619 TRF Tandem_Repeat 53230 53317 99 + . . scaffold1619 TRF Tandem_Repeat 58682 58736 110 + . . scaffold1619 GLEAN mRNA 62897 64771 0.998956 - . ID=CGI_10010217; scaffold1619 GLEAN promoter 64772 65771 0.998956 - . ID=CGI_10010217; scaffold1619 TRF Tandem_Repeat 66606 66648 59 + . . scaffold1619 TRF Tandem_Repeat 66612 66653 52 + . . scaffold1619 GLEAN promoter 69354 70353 0.630755 + . ID=CGI_10010218; scaffold1619 GLEAN mRNA 70354 107598 0.630755 + . ID=CGI_10010218; scaffold1619 TRF Tandem_Repeat 80019 80252 276 + . . scaffold1619 TRF Tandem_Repeat 86305 86562 399 + . . scaffold1619 TRF Tandem_Repeat 87605 87802 169 + . . scaffold1619 TRF Tandem_Repeat 88644 88731 108 + . . scaffold1619 TRF Tandem_Repeat 88925 88958 50 + . . scaffold1619 TRF Tandem_Repeat 95347 95915 958 + . . scaffold1619 TRF Tandem_Repeat 96513 96851 538 + . . scaffold1619 GLEAN mRNA 104029 111364 0.989908 - . ID=CGI_10010219; scaffold1619 GLEAN promoter 111365 112364 0.989908 - . ID=CGI_10010219; scaffold1619 GLEAN mRNA 115652 116118 1 - . ID=CGI_10010220; scaffold1619 GLEAN promoter 116119 117118 1 - . ID=CGI_10010220; scaffold1619 TRF Tandem_Repeat 119234 119295 124 + . . scaffold1619 TRF Tandem_Repeat 120635 121398 678 + . . scaffold1619 TRF Tandem_Repeat 123543 123620 156 + . . scaffold1619 TRF Tandem_Repeat 123968 124008 82 + . . scaffold1619 TRF Tandem_Repeat 134269 134296 56 + . . scaffold1619 WUBlastX LTR_Gypsy 135202 135393 20 - . . scaffold1619 WUBlastX LTR_Copia 135283 135375 29 - . . scaffold1619 WUBlastX LTR_Gypsy-Cigr 135301 136302 646 - . . scaffold1619 WUBlastX LTR_Gypsy 136316 137521 825 - . . scaffold1619 WUBlastX LTR_Gypsy 137475 138767 362 - . . scaffold1619 WUBlastX LTR_Gypsy-Cigr 137523 138026 417 - . . scaffold1619 WUBlastX LTR_Gypsy 138345 138923 90 - . . scaffold1619 WUBlastX LTR_Gypsy 138882 139607 178 - . . scaffold1619 WUBlastX LTR_Gypsy-Cigr 139149 139649 211 - . . scaffold1619 WUBlastX DNA_Harbinger 147396 147530 22 + . . scaffold1619 WUBlastX DNA_Harbinger 147399 147491 32 + . . scaffold1619 WUBlastX DNA_Harbinger 148150 148350 152 + . . scaffold1619 TRF Tandem_Repeat 163996 164027 55 + . . scaffold1619 WUBlastX LINE_L1-Tx1 164102 164977 99 - . . scaffold1619 WUBlastX LINE_L1-Tx1 165235 166548 276 - . . scaffold1619 WUBlastX LINE_L1 167182 167241 22 - . . scaffold1619 TRF Tandem_Repeat 171083 171316 380 + . . scaffold1619 WUBlastX LINE_Penelope 171500 171964 46 + . . scaffold1619 WUBlastX LINE_Penelope 171578 172120 35 + . . scaffold1619 WUBlastX LINE_Penelope 171584 171997 64 + . . scaffold1619 GLEAN mRNA 173752 191933 0.641992 - . ID=CGI_10010221; scaffold1619 GLEAN promoter 191934 192933 0.641992 - . ID=CGI_10010221; scaffold1619 GLEAN mRNA 195930 197597 0.969337 - . ID=CGI_10010222; scaffold1619 GLEAN promoter 197598 198597 0.969337 - . ID=CGI_10010222; scaffold1619 TRF Tandem_Repeat 201384 201438 101 + . . scaffold1619 TRF Tandem_Repeat 203612 203650 60 + . . scaffold1619 TRF Tandem_Repeat 206325 206376 104 + . . scaffold1619 WUBlastX LINE_RTE-BovB 235824 236000 45 - . . scaffold1619 WUBlastX LINE_RTE-BovB 235824 236057 44 - . . scaffold1619 WUBlastX LINE_RTE-BovB 235824 235964 76 - . . scaffold1619 WUBlastX LINE_RTE-BovB 236168 236251 33 - . . scaffold1619 WUBlastX LINE_RTE-BovB 236263 236649 97 - . . scaffold1619 WUBlastX LINE_RTE-BovB 236335 236631 161 - . . scaffold1619 WUBlastX LINE_RTE-BovB 236335 236910 77 - . . scaffold1619 WUBlastX LINE_RTE-BovB 236855 237295 109 - . . scaffold1619 TRF Tandem_Repeat 237302 237363 124 + . . scaffold1619 GLEAN promoter 239414 240413 0.998486 + . ID=CGI_10010223; scaffold1619 GLEAN mRNA 240414 243906 0.998486 + . ID=CGI_10010223; scaffold1619 WUBlastX DNA_Kolobok-Hyd 240731 240799 27 + . . scaffold1619 TRF Tandem_Repeat 241651 241688 67 + . . scaffold1619 WUBlastX LINE_L1-Tx1 248837 249274 142 - . . scaffold1619 WUBlastX LTR_DIRS 251856 252068 60 - . . scaffold1619 TRF Tandem_Repeat 253037 253066 60 + . . scaffold1619 WUBlastX LTR_DIRS 253242 253577 54 - . . scaffold1619 TRF Tandem_Repeat 256934 257188 393 + . . scaffold162 WUBlastX DNA_TcMar-Tc1 2656 2931 95 - . . scaffold162 WUBlastX DNA_TcMar-Tc1 2770 2988 80 - . . scaffold162 WUBlastX DNA_TcMar-Tc1 2976 3416 84 - . . scaffold162 WUBlastX DNA_TcMar-Tc1 3406 3645 50 - . . scaffold162 TRF Tandem_Repeat 10789 10830 52 + . . scaffold162 TRF Tandem_Repeat 25765 25802 58 + . . scaffold162 TRF Tandem_Repeat 25919 25965 85 + . . scaffold162 TRF Tandem_Repeat 27620 27682 61 + . . scaffold162 TRF Tandem_Repeat 27623 27670 53 + . . scaffold162 WUBlastX DNA_hAT-Tip100 32187 32477 72 - . . scaffold162 WUBlastX DNA_hAT-Tip100 32238 32447 78 - . . scaffold162 WUBlastX DNA_hAT-Tip100 32916 33059 37 - . . scaffold162 WUBlastX DNA_hAT-Tip100 33450 33650 42 - . . scaffold162 WUBlastX DNA_hAT-Tip100 33522 33707 20 - . . scaffold162 WUBlastX DNA_hAT 33870 34043 74 - . . scaffold162 WUBlastX DNA_hAT-Tip100 33921 34070 28 - . . scaffold162 WUBlastX DNA_hAT 34196 34804 279 - . . scaffold162 WUBlastX DNA_hAT-Tip100 34196 35053 250 - . . scaffold162 WUBlastX DNA_hAT-Tip100 34856 35092 29 - . . scaffold162 GLEAN promoter 39123 40122 0.544852 + . ID=CGI_10014087; scaffold162 GLEAN mRNA 40123 45538 0.544852 + . ID=CGI_10014087; scaffold162 GLEAN mRNA 48572 73668 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L1-Tx1 50132 50389 24 - . . scaffold162 WUBlastX LINE_L1-Tx1 50374 50583 39 - . . scaffold162 WUBlastX LINE_L1-Tx1 50658 52097 207 - . . scaffold162 WUBlastX LINE_L1-Tx1 51201 52019 469 - . . scaffold162 WUBlastX LINE_L1-Tx1 51947 52180 172 - . . scaffold162 WUBlastX LINE_L1 51995 52219 94 - . . scaffold162 TRF Tandem_Repeat 52220 52267 51 + . . scaffold162 TRF Tandem_Repeat 52221 52271 57 + . . scaffold162 WUBlastX LINE_L2 53005 53100 30 - . . scaffold162 WUBlastX LINE_RTE-X 53772 54086 100 + . . scaffold162 WUBlastX LINE_RTE-X 53859 54092 132 + . . scaffold162 WUBlastX LINE_RTE-X 54314 55303 151 + . . scaffold162 WUBlastX LINE_RTE-X 54512 55393 397 + . . scaffold162 WUBlastX LINE_RTE-X 54515 55552 309 + . . scaffold162 WUBlastX LINE_RTE-X 55581 55922 64 + . . scaffold162 WUBlastX LINE_RTE-X 55629 55859 64 + . . scaffold162 TRF Tandem_Repeat 57932 58069 147 + . . scaffold162 TRF Tandem_Repeat 57933 58068 79 + . . scaffold162 TRF Tandem_Repeat 59978 60370 786 + . . scaffold162 TRF Tandem_Repeat 61271 61305 70 + . . scaffold162 WUBlastX LTR_Gypsy 72882 73172 61 - . . scaffold162 WUBlastX LTR_Gypsy-Cigr 73002 73175 68 - . . scaffold162 GLEAN promoter 73669 74668 0.362555 - . ID=CGI_10014088; scaffold162 WUBlastX LINE_L2 75139 75378 32 + . . scaffold162 WUBlastX LINE_CR1-L2 75191 75997 204 + . . scaffold162 WUBlastX LINE_CR1-L2 75443 75997 252 + . . scaffold162 WUBlastX LTR_Gypsy 76054 76320 59 + . . scaffold162 WUBlastX LTR_Gypsy 99063 99155 29 - . . scaffold162 GLEAN mRNA 99199 99384 0.532275 - . ID=CGI_10014089; scaffold162 GLEAN promoter 99385 100384 0.532275 - . ID=CGI_10014089; scaffold162 WUBlastX LTR_Gypsy 99561 99596 22 - . . scaffold162 WUBlastX LTR_Gypsy 100062 100529 62 - . . scaffold162 WUBlastX LTR_Gypsy 100227 100451 102 - . . scaffold162 WUBlastX LTR_Gypsy 100275 100478 154 - . . scaffold162 WUBlastX LTR_Gypsy 100436 100645 143 - . . scaffold162 WUBlastX LTR_Gypsy-Cigr 100436 100687 119 - . . scaffold162 WUBlastX LTR_Gypsy 100436 100771 98 - . . scaffold162 WUBlastX LTR_Gypsy 100772 101446 206 - . . scaffold162 WUBlastX LTR_Gypsy 100933 101223 225 - . . scaffold162 WUBlastX LTR_Gypsy 101216 101554 54 - . . scaffold162 WUBlastX LTR_Gypsy 101219 101503 163 - . . scaffold162 WUBlastX LTR_Gypsy 101733 101819 35 - . . scaffold162 WUBlastX LINE_Penelope 108525 109052 201 - . . scaffold162 TRF Tandem_Repeat 111196 111245 66 + . . scaffold162 GLEAN mRNA 125039 158542 0.510942 - . ID=CGI_10014090; scaffold162 TRF Tandem_Repeat 129248 129280 66 + . . scaffold162 WUBlastX LINE_L1-Tx1 129879 130352 136 - . . scaffold162 TRF Tandem_Repeat 130600 130626 54 + . . scaffold162 TRF Tandem_Repeat 137313 137432 114 + . . scaffold162 TRF Tandem_Repeat 139291 139409 82 + . . scaffold162 GLEAN promoter 146351 147350 1 + . ID=CGI_10014091; scaffold162 GLEAN mRNA 147351 150865 1 + . ID=CGI_10014091; scaffold162 TRF Tandem_Repeat 148366 148409 88 + . . scaffold162 GLEAN promoter 158543 159542 0.510942 - . ID=CGI_10014090; scaffold162 GLEAN promoter 160019 161018 1 + . ID=CGI_10014092; scaffold162 GLEAN mRNA 161019 166596 1 + . ID=CGI_10014092; scaffold162 TRF Tandem_Repeat 170013 170890 1097 + . . scaffold162 TRF Tandem_Repeat 172247 172319 53 + . . scaffold162 TRF Tandem_Repeat 178847 178890 88 + . . scaffold162 TRF Tandem_Repeat 181306 181337 64 + . . scaffold162 TRF Tandem_Repeat 183412 183462 50 + . . scaffold162 TRF Tandem_Repeat 183419 183462 54 + . . scaffold162 WUBlastX LINE_RTE-X 183507 183722 60 - . . scaffold162 TRF Tandem_Repeat 193546 193583 69 + . . scaffold162 WUBlastX LINE_RTE-X 203006 203956 139 + . . scaffold162 WUBlastX LINE_RTE-X 203180 203962 236 + . . scaffold162 GLEAN mRNA 214716 217931 1 - . ID=CGI_10014093; scaffold162 GLEAN promoter 217932 218931 1 - . ID=CGI_10014093; scaffold162 TRF Tandem_Repeat 219029 219095 134 + . . scaffold162 TRF Tandem_Repeat 224029 224077 98 + . . scaffold162 TRF Tandem_Repeat 230518 230575 116 + . . scaffold162 TRF Tandem_Repeat 231293 231436 238 + . . scaffold162 TRF Tandem_Repeat 237393 237433 64 + . . scaffold162 TRF Tandem_Repeat 240372 240425 108 + . . scaffold162 TRF Tandem_Repeat 241914 241974 122 + . . scaffold162 TRF Tandem_Repeat 243355 243432 68 + . . scaffold162 TRF Tandem_Repeat 243363 243429 107 + . . scaffold162 TRF Tandem_Repeat 247796 247836 82 + . . scaffold162 WUBlastX LINE_RTE-X 252513 252740 93 - . . scaffold162 WUBlastX LINE_RTE-X 252582 252872 98 - . . scaffold162 GLEAN mRNA 254328 277132 0.643433 - . ID=CGI_10014094; scaffold162 GLEAN promoter 256884 257883 1 + . ID=CGI_10014095; scaffold162 GLEAN mRNA 257884 258879 1 + . ID=CGI_10014095; scaffold162 TRF Tandem_Repeat 262596 262627 64 + . . scaffold162 TRF Tandem_Repeat 266289 266344 76 + . . scaffold162 TRF Tandem_Repeat 267713 267760 51 + . . scaffold162 WUBlastX LTR_Gypsy 270802 271191 122 - . . scaffold162 WUBlastX LTR_Gypsy 270808 271023 127 - . . scaffold162 WUBlastX LTR_Gypsy 271221 271409 58 - . . scaffold162 WUBlastX LTR_Gypsy 271251 271403 63 - . . scaffold162 WUBlastX LTR_Gypsy 271307 271792 117 - . . scaffold162 WUBlastX LTR_Gypsy 271400 273580 1254 - . . scaffold162 WUBlastX LTR_Gypsy 276242 276838 121 - . . scaffold162 GLEAN promoter 277133 278132 0.643433 - . ID=CGI_10014094; scaffold162 GLEAN mRNA 280554 281021 0.995181 - . ID=CGI_10014096; scaffold162 GLEAN promoter 281022 282021 0.995181 - . ID=CGI_10014096; scaffold162 WUBlastX LINE_CR1-L2 282904 283641 259 + . . scaffold162 WUBlastX LINE_L1 303485 303742 55 + . . scaffold162 WUBlastX LINE_CR1-L2 303527 303802 117 + . . scaffold162 WUBlastX LINE_CR1-L2 304541 304654 37 + . . scaffold162 WUBlastX LINE_L2 304775 305032 79 + . . scaffold162 WUBlastX LINE_CR1-L2 305027 305200 71 + . . scaffold162 WUBlastX LINE_L2 305178 306041 412 + . . scaffold162 TRF Tandem_Repeat 307607 307639 66 + . . scaffold162 TRF Tandem_Repeat 308913 308952 80 + . . scaffold162 GLEAN promoter 310884 311883 0.983153 + . ID=CGI_10014097; scaffold162 TRF Tandem_Repeat 310976 311009 68 + . . scaffold162 GLEAN mRNA 311884 314466 0.983153 + . ID=CGI_10014097; scaffold162 GLEAN mRNA 316701 319648 1 - . ID=CGI_10014098; scaffold162 GLEAN promoter 319649 320648 1 - . ID=CGI_10014098; scaffold162 GLEAN mRNA 322081 324638 0.999824 - . ID=CGI_10014099; scaffold162 GLEAN promoter 323953 324952 1 + . ID=CGI_10014100; scaffold162 GLEAN promoter 324639 325638 0.999824 - . ID=CGI_10014099; scaffold162 GLEAN mRNA 324953 327155 1 + . ID=CGI_10014100; scaffold162 GLEAN mRNA 328195 337244 1 - . ID=CGI_10014101; scaffold162 GLEAN promoter 330558 331557 1 + . ID=CGI_10014102; scaffold162 GLEAN mRNA 331558 334100 1 + . ID=CGI_10014102; scaffold162 GLEAN promoter 337245 338244 1 - . ID=CGI_10014101; scaffold162 GLEAN promoter 339365 340364 0.999916 + . ID=CGI_10014103; scaffold162 GLEAN mRNA 340365 348385 0.999916 + . ID=CGI_10014103; scaffold162 TRF Tandem_Repeat 347070 347120 102 + . . scaffold162 GLEAN promoter 349305 350304 0.996693 + . ID=CGI_10014104; scaffold162 GLEAN mRNA 350305 351961 0.996693 + . ID=CGI_10014104; scaffold162 GLEAN mRNA 355121 386233 0.297644 - . ID=CGI_10014105; scaffold162 TRF Tandem_Repeat 365348 365503 102 + . . scaffold162 TRF Tandem_Repeat 375079 375219 158 + . . scaffold162 TRF Tandem_Repeat 384522 384916 502 + . . scaffold162 GLEAN promoter 386234 386316 0.297644 - . ID=CGI_10014105; scaffold1621 WUBlastX LINE_CR1-L2 1281 1439 21 + . . scaffold1621 WUBlastX LINE_CR1-L2 1308 1439 76 + . . scaffold1621 WUBlastX LINE_CR1-L2 1446 1736 62 + . . scaffold1621 WUBlastX DNA_IS4EU 3612 3737 25 - . . scaffold1621 WUBlastX DNA_IS4EU 3932 4681 61 - . . scaffold1621 TRF Tandem_Repeat 6081 6128 96 + . . scaffold1622 WUBlastX LINE_Penelope 2429 3061 62 + . . scaffold1622 WUBlastX LINE_Penelope 2525 3037 89 + . . scaffold1622 WUBlastX LINE_Penelope 2636 3052 203 + . . scaffold1622 WUBlastX LINE_Penelope 2756 3154 90 + . . scaffold1622 GLEAN mRNA 7558 10480 0.341222 - . ID=CGI_10000819; scaffold1622 GLEAN promoter 10481 10574 0.341222 - . ID=CGI_10000819; scaffold1623 GLEAN promoter 1672 2671 0.211469 + . ID=CGI_10002853; scaffold1623 GLEAN mRNA 2672 21645 0.211469 + . ID=CGI_10002853; scaffold1623 TRF Tandem_Repeat 4598 4670 128 + . . scaffold1623 WUBlastX LINE_RTE-BovB 8685 9074 108 - . . scaffold1623 WUBlastX LINE_RTE-BovB 9098 9133 20 - . . scaffold1623 WUBlastX LINE_RTE-BovB 9382 9417 20 - . . scaffold1623 WUBlastX DNA_Sola 12520 12774 52 - . . scaffold1623 WUBlastX DNA_Sola 13035 13094 20 - . . scaffold1623 WUBlastX RC_Helitron 14447 14926 106 + . . scaffold1623 WUBlastX RC_Helitron 14528 15409 153 + . . scaffold1623 WUBlastX DNA_Harbinger 16030 16191 70 - . . scaffold1623 TRF Tandem_Repeat 18198 18987 972 + . . scaffold1623 TRF Tandem_Repeat 19018 19085 109 + . . scaffold1623 TRF Tandem_Repeat 26019 26058 62 + . . scaffold1623 WUBlastX DNA_Harbinger 33056 33166 55 + . . scaffold1623 WUBlastX DNA_Harbinger 33273 33785 79 + . . scaffold1623 WUBlastX DNA_Harbinger 34937 35092 95 + . . scaffold1623 WUBlastX LINE_L2 36215 36445 42 - . . scaffold1623 WUBlastX LINE_L1-Tx1 36251 36466 127 - . . scaffold1623 WUBlastX LINE_L1-Tx1 36430 36519 50 - . . scaffold1623 TRF Tandem_Repeat 38736 38801 57 + . . scaffold1623 WUBlastX LINE_L1-Tx1 38939 39724 127 - . . scaffold1623 WUBlastX DNA_Maverick 46717 47217 81 - . . scaffold1623 WUBlastX DNA_Maverick 46723 46869 93 - . . scaffold1623 WUBlastX DNA_Maverick 46960 47316 118 - . . scaffold1623 WUBlastX LTR_Gypsy 53457 53675 73 + . . scaffold1623 WUBlastX LTR_Gypsy 53672 54499 261 + . . scaffold1623 WUBlastX LTR_Gypsy 54486 54818 288 + . . scaffold1623 WUBlastX LTR_Gypsy 54826 55680 633 + . . scaffold1623 WUBlastX LTR_Gypsy 54847 55887 216 + . . scaffold1623 WUBlastX LTR_Gypsy 55788 55943 22 + . . scaffold1623 WUBlastX LTR_Gypsy 56052 56216 23 + . . scaffold1623 WUBlastX LTR_Gypsy 56282 56464 44 + . . scaffold1623 WUBlastX LTR_Gypsy 56449 56682 44 + . . scaffold1623 TRF Tandem_Repeat 57076 57116 82 + . . scaffold1624 TRF Tandem_Repeat 2889 3052 113 + . . scaffold1624 TRF Tandem_Repeat 8752 8829 156 + . . scaffold1624 TRF Tandem_Repeat 9511 9542 55 + . . scaffold1624 TRF Tandem_Repeat 10954 11022 61 + . . scaffold1624 TRF Tandem_Repeat 15089 15144 112 + . . scaffold1624 GLEAN promoter 15249 16248 0.837277 + . ID=CGI_10004584; scaffold1624 GLEAN mRNA 16249 19267 0.837277 + . ID=CGI_10004584; scaffold1624 TRF Tandem_Repeat 25693 25748 76 + . . scaffold1624 WUBlastX DNA_Crypton 48467 48628 25 + . . scaffold1624 TRF Tandem_Repeat 49247 49294 87 + . . scaffold1624 WUBlastX DNA_Crypton 49555 50031 86 + . . scaffold1624 WUBlastX LTR_Gypsy 77143 77706 70 - . . scaffold1624 WUBlastX DNA_Maverick 77149 77625 328 - . . scaffold1624 GLEAN promoter 77674 78673 0.999349 + . ID=CGI_10004587; scaffold1624 GLEAN mRNA 77966 78424 0.69447 - . ID=CGI_10004586; scaffold1624 GLEAN promoter 78425 79424 0.69447 - . ID=CGI_10004586; scaffold1624 GLEAN mRNA 78674 78952 0.999349 + . ID=CGI_10004587; scaffold1624 TRF Tandem_Repeat 91825 91899 86 + . . scaffold1624 TRF Tandem_Repeat 91825 91890 53 + . . scaffold1624 TRF Tandem_Repeat 91828 91899 72 + . . scaffold1624 TRF Tandem_Repeat 91832 91899 64 + . . scaffold1624 WUBlastX LINE_Penelope 93765 94076 30 - . . scaffold1624 WUBlastX LINE_Penelope 94208 94351 43 - . . scaffold1625 TRF Tandem_Repeat 2547 2583 74 + . . scaffold1625 TRF Tandem_Repeat 24693 24732 62 + . . scaffold1625 WUBlastX LTR_Gypsy 26901 27536 175 - . . scaffold1625 WUBlastX LTR_Gypsy 26976 27497 191 - . . scaffold1625 GLEAN promoter 33009 34008 0.802836 + . ID=CGI_10007526; scaffold1625 GLEAN mRNA 34009 36188 0.802836 + . ID=CGI_10007526; scaffold1625 GLEAN mRNA 36745 41949 0.999995 - . ID=CGI_10007527; scaffold1625 GLEAN promoter 41950 42949 0.999995 - . ID=CGI_10007527; scaffold1625 GLEAN promoter 45643 46642 1 + . ID=CGI_10007528; scaffold1625 GLEAN mRNA 46643 54066 1 + . ID=CGI_10007528; scaffold1625 TRF Tandem_Repeat 51548 51767 368 + . . scaffold1625 TRF Tandem_Repeat 51950 52263 171 + . . scaffold1625 TRF Tandem_Repeat 52039 52659 394 + . . scaffold1625 TRF Tandem_Repeat 52276 52564 200 + . . scaffold1625 TRF Tandem_Repeat 52546 52681 202 + . . scaffold1625 WUBlastX LTR_DIRS 59771 60565 146 - . . scaffold1625 WUBlastX LTR_DIRS 59786 60370 390 - . . scaffold1625 WUBlastX LTR_DIRS 60495 61205 141 - . . scaffold1625 WUBlastX LTR_Gypsy 61161 61265 21 - . . scaffold1625 TRF Tandem_Repeat 63039 63682 393 + . . scaffold1625 TRF Tandem_Repeat 63319 63695 428 + . . scaffold1625 TRF Tandem_Repeat 86979 87014 72 + . . scaffold1625 TRF Tandem_Repeat 88298 88340 86 + . . scaffold1625 GLEAN promoter 89845 90844 0.999364 + . ID=CGI_10007529; scaffold1625 GLEAN mRNA 90845 97594 0.999364 + . ID=CGI_10007529; scaffold1625 WUBlastX LINE_RTE-X 100967 101221 55 + . . scaffold1625 TRF Tandem_Repeat 110757 110802 92 + . . scaffold1625 TRF Tandem_Repeat 112747 113006 288 + . . scaffold1625 TRF Tandem_Repeat 112747 113003 352 + . . scaffold1625 WUBlastX LINE_RTE-X 113085 113504 26 - . . scaffold1625 WUBlastX LINE_RTE-X 113163 113396 40 - . . scaffold1625 WUBlastX LINE_RTE-X 113648 113767 38 - . . scaffold1625 TRF Tandem_Repeat 115719 115768 59 + . . scaffold1625 TRF Tandem_Repeat 115728 115768 55 + . . scaffold1625 TRF Tandem_Repeat 116416 116505 128 + . . scaffold1625 TRF Tandem_Repeat 128404 128508 105 + . . scaffold1625 TRF Tandem_Repeat 128406 128510 117 + . . scaffold1625 TRF Tandem_Repeat 128409 128509 108 + . . scaffold1625 TRF Tandem_Repeat 138158 138445 252 + . . scaffold1625 TRF Tandem_Repeat 138469 138757 260 + . . scaffold1625 TRF Tandem_Repeat 138774 139094 236 + . . scaffold1625 TRF Tandem_Repeat 141643 143832 3257 + . . scaffold1625 TRF Tandem_Repeat 141756 142662 83 + . . scaffold1625 TRF Tandem_Repeat 142483 142549 55 + . . scaffold1625 TRF Tandem_Repeat 143470 143536 52 + . . scaffold1625 GLEAN promoter 144465 145464 1 + . ID=CGI_10007530; scaffold1625 GLEAN mRNA 145465 147347 1 + . ID=CGI_10007530; scaffold1625 TRF Tandem_Repeat 150827 152367 2312 + . . scaffold1625 GLEAN mRNA 154393 155445 0.999064 - . ID=CGI_10007531; scaffold1625 WUBlastX LTR_Copia 154798 155040 43 - . . scaffold1625 WUBlastX LTR_Gypsy-Cigr 154987 155445 70 - . . scaffold1625 GLEAN promoter 155446 156445 0.999064 - . ID=CGI_10007531; scaffold1625 GLEAN mRNA 163230 175754 0.999993 - . ID=CGI_10007533; scaffold1625 WUBlastX DNA_TcMar-Tc1 165742 166722 416 - . . scaffold1625 TRF Tandem_Repeat 169501 169567 116 + . . scaffold1625 TRF Tandem_Repeat 169606 169696 141 + . . scaffold1625 WUBlastX LINE_RTE-X 169737 169952 26 - . . scaffold1625 WUBlastX LINE_RTE-X 169773 170072 54 - . . scaffold1625 WUBlastX LINE_RTE-X 169785 170144 40 - . . scaffold1625 WUBlastX LINE_RTE-X 170191 170367 20 - . . scaffold1625 WUBlastX LINE_RTE-X 170255 170308 39 - . . scaffold1625 WUBlastX LINE_RTE-X 170269 170391 40 - . . scaffold1625 WUBlastX LINE_RTE-X 170379 170801 71 - . . scaffold1625 WUBlastX LINE_RTE-X 170448 170879 189 - . . scaffold1625 WUBlastX LINE_RTE-X 170448 171479 57 - . . scaffold1625 WUBlastX LINE_RTE-X 171688 171828 34 - . . scaffold1625 WUBlastX LINE_RTE-X 171968 172018 28 - . . scaffold1625 GLEAN promoter 175755 176754 0.999993 - . ID=CGI_10007533; scaffold1625 GLEAN mRNA 176211 183059 1 - . ID=CGI_10007534; scaffold1625 GLEAN promoter 183060 183691 1 - . ID=CGI_10007534; scaffold1627 GLEAN promoter 1 408 0.702089 + . ID=CGI_10009559; scaffold1627 GLEAN mRNA 52 249 0.999372 - . ID=CGI_10009557; scaffold1627 GLEAN promoter 250 1249 0.999372 - . ID=CGI_10009557; scaffold1627 GLEAN mRNA 271 1023 0.59015 - . ID=CGI_10009558; scaffold1627 GLEAN mRNA 409 9959 0.702089 + . ID=CGI_10009559; scaffold1627 GLEAN promoter 1024 2023 0.59015 - . ID=CGI_10009558; scaffold1627 TRF Tandem_Repeat 4711 4788 138 + . . scaffold1627 GLEAN promoter 9390 10389 0.593391 + . ID=CGI_10009560; scaffold1627 TRF Tandem_Repeat 9443 9549 74 + . . scaffold1627 TRF Tandem_Repeat 9444 9550 89 + . . scaffold1627 TRF Tandem_Repeat 9451 9559 107 + . . scaffold1627 GLEAN mRNA 10390 21489 0.593391 + . ID=CGI_10009560; scaffold1627 WUBlastX DNA_TcMar-Marin 25545 25682 41 + . . scaffold1627 TRF Tandem_Repeat 25918 25944 54 + . . scaffold1627 TRF Tandem_Repeat 25944 26008 130 + . . scaffold1627 WUBlastX LTR_Gypsy 28698 29204 60 - . . scaffold1627 WUBlastX LTR_Gypsy 28767 29192 101 - . . scaffold1627 WUBlastX LTR_Gypsy 30677 31099 92 - . . scaffold1627 GLEAN mRNA 33192 33434 0.999998 - . ID=CGI_10009561; scaffold1627 GLEAN promoter 33435 34434 0.999998 - . ID=CGI_10009561; scaffold1627 WUBlastX LTR_Gypsy 35826 36632 301 + . . scaffold1627 WUBlastX LTR_Gypsy 35952 36656 329 + . . scaffold1627 WUBlastX LTR_Gypsy 36141 36653 399 + . . scaffold1627 WUBlastX LTR_Gypsy 37412 37504 25 + . . scaffold1627 WUBlastX LTR_Gypsy 37439 37492 30 + . . scaffold1627 WUBlastX LTR_Gypsy 37620 37727 36 + . . scaffold1627 WUBlastX LTR_ERV1 37632 37715 53 + . . scaffold1627 WUBlastX LTR_Gypsy-Cigr 37723 38007 77 + . . scaffold1627 WUBlastX LTR_Gypsy 37786 38325 109 + . . scaffold1627 WUBlastX LTR_Gypsy 38345 38698 43 + . . scaffold1627 WUBlastX LTR_Gypsy 38510 38725 55 + . . scaffold1627 WUBlastX LTR_Gypsy 38597 38770 49 + . . scaffold1627 WUBlastX LTR_Gypsy 38597 38743 56 + . . scaffold1627 GLEAN promoter 41721 42720 0.549617 + . ID=CGI_10009562; scaffold1627 GLEAN mRNA 42721 61730 0.549617 + . ID=CGI_10009562; scaffold1627 TRF Tandem_Repeat 55546 55592 62 + . . scaffold1627 GLEAN mRNA 66742 71430 0.991124 - . ID=CGI_10009563; scaffold1627 GLEAN promoter 71431 72430 0.991124 - . ID=CGI_10009563; scaffold1627 WUBlastX LTR_Pao 94218 94343 87 + . . scaffold1627 WUBlastX LTR_Pao 94438 94899 118 + . . scaffold1627 WUBlastX LTR_Pao 94606 94902 123 + . . scaffold1627 WUBlastX LTR_Pao 94618 95022 103 + . . scaffold1627 WUBlastX LTR_Pao 94663 94899 156 + . . scaffold1627 WUBlastX LTR_Pao 94669 94944 136 + . . scaffold1627 WUBlastX LTR_Pao 95235 95279 20 + . . scaffold1627 WUBlastX DNA_Harbinger 96274 96546 124 + . . scaffold1627 WUBlastX DNA_Harbinger 96540 96914 249 + . . scaffold1627 WUBlastX DNA_Harbinger 96555 96992 178 + . . scaffold1627 GLEAN mRNA 118593 140645 0.525814 - . ID=CGI_10009564; scaffold1627 TRF Tandem_Repeat 132392 132437 76 + . . scaffold1627 TRF Tandem_Repeat 138175 138254 83 + . . scaffold1627 TRF Tandem_Repeat 138838 139196 250 + . . scaffold1627 TRF Tandem_Repeat 138845 139197 283 + . . scaffold1627 GLEAN promoter 140646 141645 0.525814 - . ID=CGI_10009564; scaffold1627 TRF Tandem_Repeat 148508 149563 1020 + . . scaffold1627 WUBlastX DNA_Zator 150687 151052 33 + . . scaffold1627 WUBlastX DNA 151603 151785 32 + . . scaffold1627 WUBlastX DNA_Zator 151727 152029 58 + . . scaffold1627 WUBlastX DNA 151787 152032 74 + . . scaffold1627 GLEAN promoter 155049 156048 0.63892 + . ID=CGI_10009565; scaffold1627 GLEAN mRNA 156049 160564 0.63892 + . ID=CGI_10009565; scaffold1627 TRF Tandem_Repeat 158163 158240 156 + . . scaffold1627 WUBlastX LINE_L1-Tx1 167004 169364 814 - . . scaffold1627 GLEAN mRNA 171711 172869 0.809567 - . ID=CGI_10009566; scaffold1627 GLEAN promoter 172870 173869 0.809567 - . ID=CGI_10009566; scaffold1627 GLEAN mRNA 173064 218682 0.503235 - . ID=CGI_10009567; scaffold1627 TRF Tandem_Repeat 183927 183965 78 + . . scaffold1627 TRF Tandem_Repeat 203776 203847 117 + . . scaffold1627 WUBlastX DNA_TcMar-Tc1 208057 208266 48 + . . scaffold1627 GLEAN promoter 218683 219682 0.503235 - . ID=CGI_10009567; scaffold1627 TRF Tandem_Repeat 220026 220058 57 + . . scaffold1629 GLEAN mRNA 3893 6957 0.717209 - . ID=CGI_10002156; scaffold1629 GLEAN promoter 6958 7957 0.717209 - . ID=CGI_10002156; scaffold1629 TRF Tandem_Repeat 9117 9150 59 + . . scaffold1629 WUBlastX LTR_Ngaro 13914 14333 185 + . . scaffold1629 TRF Tandem_Repeat 15716 15754 78 + . . scaffold1629 TRF Tandem_Repeat 17566 17600 54 + . . scaffold1629 TRF Tandem_Repeat 17654 17696 77 + . . scaffold1629 TRF Tandem_Repeat 17826 17876 102 + . . scaffold1629 TRF Tandem_Repeat 18186 18216 62 + . . scaffold1629 TRF Tandem_Repeat 18544 18792 234 + . . scaffold1629 TRF Tandem_Repeat 18544 18792 243 + . . scaffold1629 WUBlastX LINE_L1 32848 33042 35 + . . scaffold1629 WUBlastX LINE_I-Nimb 33225 33545 33 + . . scaffold1629 WUBlastX LINE_RTE-X 33297 34223 208 + . . scaffold1629 WUBlastX LINE_RTE-X 33921 34304 26 + . . scaffold1629 WUBlastX LINE_RTE-X 34351 35241 164 + . . scaffold1629 WUBlastX LINE_RTE-X 34351 35085 205 + . . scaffold1629 WUBlastX LINE_RTE-X 35042 35317 152 + . . scaffold1629 WUBlastX LINE_RTE-BovB 35054 35368 82 + . . scaffold1629 WUBlastX LINE_RTE-X 35379 35861 314 + . . scaffold1629 WUBlastX LINE_RTE-X 35864 36133 168 + . . scaffold1629 WUBlastX LINE_RTE-X 35873 36193 103 + . . scaffold1629 WUBlastX LINE_RTE-X 36175 36429 47 + . . scaffold1629 WUBlastX LINE_RTE-X 36414 36629 23 + . . scaffold1629 WUBlastX LINE_RTE-X 36423 36581 53 + . . scaffold1629 TRF Tandem_Repeat 36766 36831 123 + . . scaffold163 WUBlastX LINE_RTE-X 884 1183 59 - . . scaffold163 WUBlastX LINE_RTE-X 938 1264 103 - . . scaffold163 WUBlastX LINE_RTE-X 1203 1745 75 - . . scaffold163 WUBlastX LINE_RTE-X 1428 1736 86 - . . scaffold163 WUBlastX LINE_RTE-X 1458 1796 84 - . . scaffold163 WUBlastX LINE_RTE-X 1620 2042 36 - . . scaffold163 WUBlastX LINE_RTE-X 1863 1991 42 - . . scaffold163 WUBlastX LINE_RTE-X 1884 2021 52 - . . scaffold163 WUBlastX LINE_RTE-X 1997 2305 122 - . . scaffold163 WUBlastX LINE_RTE-X 2054 2305 149 - . . scaffold163 WUBlastX LINE_RTE-X 2313 2519 75 - . . scaffold163 GLEAN mRNA 5233 9753 0.999394 - . ID=CGI_10018604; scaffold163 GLEAN promoter 9754 10753 0.999394 - . ID=CGI_10018604; scaffold163 GLEAN promoter 10592 11591 0.999626 + . ID=CGI_10018605; scaffold163 GLEAN mRNA 11592 38917 0.999626 + . ID=CGI_10018605; scaffold163 TRF Tandem_Repeat 18912 19206 455 + . . scaffold163 TRF Tandem_Repeat 23219 23280 81 + . . scaffold163 TRF Tandem_Repeat 24725 26204 1824 + . . scaffold163 GLEAN mRNA 40887 49384 1 - . ID=CGI_10018606; scaffold163 GLEAN promoter 49338 50337 1 + . ID=CGI_10018607; scaffold163 GLEAN promoter 49385 50384 1 - . ID=CGI_10018606; scaffold163 GLEAN mRNA 50338 52444 1 + . ID=CGI_10018607; scaffold163 GLEAN promoter 52328 53327 1 + . ID=CGI_10018608; scaffold163 GLEAN mRNA 53328 56496 1 + . ID=CGI_10018608; scaffold163 TRF Tandem_Repeat 53507 53541 70 + . . scaffold163 TRF Tandem_Repeat 58335 58367 66 + . . scaffold163 TRF Tandem_Repeat 60128 60179 95 + . . scaffold163 WUBlastX LINE_RTE-BovB 61008 61202 57 + . . scaffold163 WUBlastX LINE_RTE-BovB 61056 61202 62 + . . scaffold163 WUBlastX LINE_RTE-BovB 61083 61202 64 + . . scaffold163 WUBlastX LINE_RTE-BovB 61181 61465 128 + . . scaffold163 TRF Tandem_Repeat 63171 63211 82 + . . scaffold163 WUBlastX LINE_RTE-X 77209 77733 73 + . . scaffold163 WUBlastX LINE_RTE-X 78115 78729 133 + . . scaffold163 WUBlastX LINE_RTE-X 78733 78879 67 + . . scaffold163 WUBlastX LINE_RTE-X 78828 79277 227 + . . scaffold163 WUBlastX LINE_L2 79841 79894 21 + . . scaffold163 WUBlastX LINE_L2 81086 81571 76 + . . scaffold163 WUBlastX LINE_CR1-L2 81570 83969 152 + . . scaffold163 WUBlastX LINE_CR1-L2 82194 84041 226 + . . scaffold163 WUBlastX LINE_L2 82866 84092 266 + . . scaffold163 TRF Tandem_Repeat 88650 88687 67 + . . scaffold163 WUBlastX LINE_RTE-X 91315 91563 61 + . . scaffold163 TRF Tandem_Repeat 92412 92483 135 + . . scaffold163 TRF Tandem_Repeat 92808 92836 58 + . . scaffold163 TRF Tandem_Repeat 93021 93064 70 + . . scaffold163 TRF Tandem_Repeat 97019 97165 105 + . . scaffold163 GLEAN mRNA 98929 103683 0.975626 - . ID=CGI_10018609; scaffold163 TRF Tandem_Repeat 99550 99580 53 + . . scaffold163 TRF Tandem_Repeat 102288 102379 114 + . . scaffold163 GLEAN promoter 102633 103632 0.895517 + . ID=CGI_10018610; scaffold163 GLEAN mRNA 103633 112444 0.895517 + . ID=CGI_10018610; scaffold163 GLEAN promoter 103684 104683 0.975626 - . ID=CGI_10018609; scaffold163 TRF Tandem_Repeat 108762 109557 1220 + . . scaffold163 WUBlastX LTR_Ngaro 109614 110210 131 + . . scaffold163 WUBlastX LTR_Ngaro 110208 111548 824 + . . scaffold163 GLEAN promoter 111985 112984 0.606466 + . ID=CGI_10018612; scaffold163 GLEAN mRNA 112452 112925 0.999659 - . ID=CGI_10018611; scaffold163 GLEAN promoter 112926 113925 0.999659 - . ID=CGI_10018611; scaffold163 GLEAN mRNA 112985 132830 0.606466 + . ID=CGI_10018612; scaffold163 WUBlastX LINE_L1-Tx1 113612 116365 1689 + . . scaffold163 WUBlastX LINE_Penelope 117082 117549 118 - . . scaffold163 TRF Tandem_Repeat 122905 122948 79 + . . scaffold163 TRF Tandem_Repeat 122948 122978 53 + . . scaffold163 TRF Tandem_Repeat 127717 127754 76 + . . scaffold163 GLEAN promoter 140309 141308 1 + . ID=CGI_10018614; scaffold163 GLEAN mRNA 140928 159922 0.469368 - . ID=CGI_10018613; scaffold163 GLEAN mRNA 141309 143858 1 + . ID=CGI_10018614; scaffold163 TRF Tandem_Repeat 154502 154534 57 + . . scaffold163 GLEAN promoter 159923 160922 0.469368 - . ID=CGI_10018613; scaffold163 TRF Tandem_Repeat 164603 164687 161 + . . scaffold163 GLEAN mRNA 165349 181491 0.535062 - . ID=CGI_10018615; scaffold163 GLEAN promoter 169380 170379 0.780072 + . ID=CGI_10018616; scaffold163 GLEAN mRNA 170380 174810 0.780072 + . ID=CGI_10018616; scaffold163 TRF Tandem_Repeat 174662 174764 102 + . . scaffold163 TRF Tandem_Repeat 179663 179723 122 + . . scaffold163 TRF Tandem_Repeat 179856 179885 51 + . . scaffold163 GLEAN promoter 181492 182491 0.535062 - . ID=CGI_10018615; scaffold163 GLEAN mRNA 182952 183660 1 - . ID=CGI_10018617; scaffold163 GLEAN promoter 183540 184539 0.999624 + . ID=CGI_10018618; scaffold163 GLEAN promoter 183661 184660 1 - . ID=CGI_10018617; scaffold163 TRF Tandem_Repeat 183751 183809 118 + . . scaffold163 GLEAN mRNA 184540 214048 0.999624 + . ID=CGI_10018618; scaffold163 GLEAN promoter 216699 217698 0.516396 + . ID=CGI_10018619; scaffold163 GLEAN mRNA 217699 234188 0.516396 + . ID=CGI_10018619; scaffold163 GLEAN promoter 237170 238169 0.997818 + . ID=CGI_10018620; scaffold163 GLEAN mRNA 238170 253809 0.997818 + . ID=CGI_10018620; scaffold163 GLEAN promoter 273404 274403 0.728917 + . ID=CGI_10018621; scaffold163 GLEAN mRNA 274404 278050 0.728917 + . ID=CGI_10018621; scaffold163 WUBlastX DNA_TcMar-Marin 280870 281064 54 - . . scaffold163 WUBlastX DNA_TcMar-Marin 281061 281135 28 - . . scaffold163 WUBlastX DNA_TcMar-Marin 281061 281174 26 - . . scaffold163 TRF Tandem_Repeat 290921 290954 59 + . . scaffold163 TRF Tandem_Repeat 296641 296666 52 + . . scaffold163 WUBlastX LTR_Pao 300578 301012 28 + . . scaffold163 TRF Tandem_Repeat 302517 302548 55 + . . scaffold163 GLEAN promoter 332507 333506 0.915172 + . ID=CGI_10018622; scaffold163 GLEAN mRNA 333507 361685 0.915172 + . ID=CGI_10018622; scaffold163 TRF Tandem_Repeat 337746 337946 204 + . . scaffold163 TRF Tandem_Repeat 337746 337946 197 + . . scaffold163 TRF Tandem_Repeat 347841 347898 91 + . . scaffold163 TRF Tandem_Repeat 347842 347895 56 + . . scaffold163 TRF Tandem_Repeat 349277 350122 1160 + . . scaffold163 GLEAN promoter 361020 362019 0.916029 + . ID=CGI_10018623; scaffold163 GLEAN mRNA 362020 364228 0.916029 + . ID=CGI_10018623; scaffold163 TRF Tandem_Repeat 363981 364006 52 + . . scaffold163 TRF Tandem_Repeat 366239 366275 74 + . . scaffold163 GLEAN mRNA 367105 372141 0.99984 - . ID=CGI_10018624; scaffold163 GLEAN promoter 372142 373141 0.99984 - . ID=CGI_10018624; scaffold163 TRF Tandem_Repeat 379222 379266 90 + . . scaffold163 GLEAN mRNA 379365 380912 1 - . ID=CGI_10018625; scaffold163 GLEAN promoter 380913 381912 1 - . ID=CGI_10018625; scaffold163 TRF Tandem_Repeat 381609 381636 56 + . . scaffold163 TRF Tandem_Repeat 382280 382334 110 + . . scaffold163 GLEAN promoter 382351 383350 0.776783 + . ID=CGI_10018626; scaffold163 GLEAN mRNA 383351 387435 0.776783 + . ID=CGI_10018626; scaffold163 GLEAN promoter 393171 394170 0.707862 + . ID=CGI_10018627; scaffold163 GLEAN mRNA 394171 415561 0.707862 + . ID=CGI_10018627; scaffold163 GLEAN promoter 430191 431190 0.955308 + . ID=CGI_10018628; scaffold163 GLEAN mRNA 431191 432477 0.955308 + . ID=CGI_10018628; scaffold163 GLEAN promoter 439738 440737 0.311673 + . ID=CGI_10018629; scaffold163 GLEAN mRNA 440738 483510 0.311673 + . ID=CGI_10018629; scaffold163 TRF Tandem_Repeat 442105 442134 51 + . . scaffold163 TRF Tandem_Repeat 449961 450556 834 + . . scaffold163 TRF Tandem_Repeat 471348 472043 1148 + . . scaffold163 WUBlastX LTR_Gypsy 476053 476913 38 + . . scaffold163 WUBlastX LTR_Gypsy 476329 476877 59 + . . scaffold163 WUBlastX LTR_Gypsy 476425 476997 38 + . . scaffold163 WUBlastX LTR_Gypsy 476434 476898 167 + . . scaffold163 WUBlastX LTR_Gypsy 477239 477280 30 + . . scaffold163 WUBlastX LTR_Gypsy 477731 477931 41 + . . scaffold163 WUBlastX LTR_Gypsy 477755 478108 36 + . . scaffold163 TRF Tandem_Repeat 479584 479638 56 + . . scaffold163 TRF Tandem_Repeat 479587 479642 62 + . . scaffold163 WUBlastX LTR_Gypsy 479679 480314 300 + . . scaffold163 WUBlastX LTR_Gypsy 479811 480281 351 + . . scaffold163 WUBlastX LTR_Gypsy-Cigr 480283 482130 822 + . . scaffold163 WUBlastX LTR_Gypsy 482018 482692 402 + . . scaffold163 GLEAN promoter 484695 485694 0.810494 + . ID=CGI_10018630; scaffold163 GLEAN mRNA 485695 492043 0.810494 + . ID=CGI_10018630; scaffold163 WUBlastX LTR_Gypsy-Troyk 487295 488326 943 + . . scaffold163 WUBlastX LTR_Gypsy 487856 489790 1027 + . . scaffold163 WUBlastX LTR_Gypsy-Troyk 488264 490780 2601 + . . scaffold163 WUBlastX LTR_Gypsy 490792 490881 69 + . . scaffold163 WUBlastX LTR_Gypsy-Troyk 490887 491471 473 + . . scaffold163 WUBlastX LTR_Gypsy-Troyk 491456 491980 168 + . . scaffold163 GLEAN mRNA 491676 503218 1 - . ID=CGI_10018631; scaffold163 GLEAN promoter 491891 492890 0.858032 + . ID=CGI_10018632; scaffold163 GLEAN mRNA 492891 503609 0.858032 + . ID=CGI_10018632; scaffold163 WUBlastX DNA_Harbinger 502753 502866 116 - . . scaffold163 GLEAN promoter 503219 504218 1 - . ID=CGI_10018631; scaffold163 WUBlastX DNA_Harbinger 503665 504123 103 - . . scaffold163 WUBlastX DNA_Harbinger 503725 504093 163 - . . scaffold163 GLEAN mRNA 505361 519807 0.999581 - . ID=CGI_10018633; scaffold163 TRF Tandem_Repeat 512694 512740 85 + . . scaffold163 TRF Tandem_Repeat 516087 516132 92 + . . scaffold163 GLEAN promoter 519808 520807 0.999581 - . ID=CGI_10018633; scaffold163 TRF Tandem_Repeat 557852 557898 85 + . . scaffold163 GLEAN promoter 557894 558893 0.374424 + . ID=CGI_10018634; scaffold163 GLEAN mRNA 558894 559527 0.374424 + . ID=CGI_10018634; scaffold163 TRF Tandem_Repeat 558987 559059 128 + . . scaffold163 WUBlastX LINE_L1-Tx1 562470 562865 39 + . . scaffold163 WUBlastX LINE_L1-Tx1 562518 562832 80 + . . scaffold1630 TRF Tandem_Repeat 2038 2079 84 + . . scaffold1630 GLEAN promoter 2240 3239 0.999999 + . ID=CGI_10013416; scaffold1630 GLEAN mRNA 3240 6173 0.999999 + . ID=CGI_10013416; scaffold1630 TRF Tandem_Repeat 5666 5690 50 + . . scaffold1630 TRF Tandem_Repeat 11477 11515 78 + . . scaffold1630 GLEAN promoter 16692 17691 0.606786 + . ID=CGI_10013417; scaffold1630 GLEAN mRNA 17692 44037 0.606786 + . ID=CGI_10013417; scaffold1630 TRF Tandem_Repeat 40105 40140 72 + . . scaffold1630 TRF Tandem_Repeat 42637 42831 119 + . . scaffold1630 TRF Tandem_Repeat 42743 42856 102 + . . scaffold1630 WUBlastX DNA_TcMar-Tc1 44219 44545 113 - . . scaffold1630 WUBlastX DNA_TcMar-Tc1 44554 44757 63 - . . scaffold1630 WUBlastX DNA_TcMar-Tc1 44751 45017 46 - . . scaffold1630 WUBlastX DNA_TcMar-Tc1 45005 45208 62 - . . scaffold1630 TRF Tandem_Repeat 48239 48358 231 + . . scaffold1630 TRF Tandem_Repeat 52504 52562 118 + . . scaffold1630 GLEAN promoter 52535 53534 0.431936 + . ID=CGI_10013418; scaffold1630 TRF Tandem_Repeat 52560 52589 60 + . . scaffold1630 GLEAN mRNA 53535 55352 0.431936 + . ID=CGI_10013418; scaffold1630 GLEAN mRNA 57961 61682 1 - . ID=CGI_10013419; scaffold1630 TRF Tandem_Repeat 58636 58693 116 + . . scaffold1630 GLEAN promoter 61683 62682 1 - . ID=CGI_10013419; scaffold1630 WUBlastX LINE_RTE-X 63100 63432 45 - . . scaffold1630 WUBlastX LINE_RTE-X 63187 63432 82 - . . scaffold1630 GLEAN promoter 63804 64803 0.992939 + . ID=CGI_10013420; scaffold1630 GLEAN mRNA 64804 82849 0.992939 + . ID=CGI_10013420; scaffold1630 TRF Tandem_Repeat 68956 68998 86 + . . scaffold1630 TRF Tandem_Repeat 80247 80402 136 + . . scaffold1630 TRF Tandem_Repeat 83651 83693 86 + . . scaffold1630 GLEAN mRNA 86913 92393 1 - . ID=CGI_10013421; scaffold1630 TRF Tandem_Repeat 89608 89681 112 + . . scaffold1630 TRF Tandem_Repeat 90560 90595 72 + . . scaffold1630 TRF Tandem_Repeat 91110 91154 90 + . . scaffold1630 GLEAN promoter 92394 93393 1 - . ID=CGI_10013421; scaffold1630 TRF Tandem_Repeat 94481 94534 108 + . . scaffold1630 GLEAN mRNA 94775 95525 0.544852 - . ID=CGI_10013422; scaffold1630 GLEAN promoter 95526 96525 0.544852 - . ID=CGI_10013422; scaffold1630 GLEAN mRNA 97533 112934 0.648556 - . ID=CGI_10013423; scaffold1630 TRF Tandem_Repeat 99610 99899 424 + . . scaffold1630 GLEAN promoter 112935 113934 0.648556 - . ID=CGI_10013423; scaffold1630 TRF Tandem_Repeat 113592 113648 73 + . . scaffold1630 GLEAN promoter 119301 120300 0.999676 + . ID=CGI_10013424; scaffold1630 GLEAN mRNA 120301 124225 0.999676 + . ID=CGI_10013424; scaffold1630 TRF Tandem_Repeat 128025 128105 162 + . . scaffold1630 TRF Tandem_Repeat 132010 132189 114 + . . scaffold1630 TRF Tandem_Repeat 132036 132207 254 + . . scaffold1630 TRF Tandem_Repeat 132054 132162 50 + . . scaffold1630 TRF Tandem_Repeat 132188 132240 67 + . . scaffold1630 WUBlastX LINE_Penelope 140988 141365 43 - . . scaffold1630 WUBlastX LINE_Penelope 141066 141353 50 - . . scaffold1630 TRF Tandem_Repeat 142969 143005 74 + . . scaffold1630 TRF Tandem_Repeat 146551 146597 85 + . . scaffold1630 TRF Tandem_Repeat 148249 148305 114 + . . scaffold1630 TRF Tandem_Repeat 177059 177097 78 + . . scaffold1630 WUBlastX LTR_Pao 186102 186671 150 - . . scaffold1630 WUBlastX LTR_Pao 186291 186671 158 - . . scaffold1630 WUBlastX LTR_Pao 186668 186940 102 - . . scaffold1630 WUBlastX LTR_Pao 186945 187193 74 - . . scaffold1630 WUBlastX LTR_Pao 186948 187139 131 - . . scaffold1630 WUBlastX LTR_Pao 187349 187441 22 - . . scaffold1630 WUBlastX LTR_Pao 187355 187426 22 - . . scaffold1630 WUBlastX LTR_Pao 187706 188065 154 - . . scaffold1630 WUBlastX LTR_Pao 187730 188167 119 - . . scaffold1630 WUBlastX LTR_Pao 187730 188029 234 - . . scaffold1630 TRF Tandem_Repeat 206014 206051 76 + . . scaffold1630 GLEAN mRNA 208694 211851 1 - . ID=CGI_10013425; scaffold1630 WUBlastX DNA_hAT 209316 209945 77 - . . scaffold1630 WUBlastX DNA_hAT 209397 209858 122 - . . scaffold1630 WUBlastX DNA_hAT 210030 210818 238 - . . scaffold1630 GLEAN promoter 211852 212851 1 - . ID=CGI_10013425; scaffold1630 TRF Tandem_Repeat 215385 215450 132 + . . scaffold1630 TRF Tandem_Repeat 229629 229669 82 + . . scaffold1630 TRF Tandem_Repeat 230384 230424 73 + . . scaffold1630 TRF Tandem_Repeat 231154 231197 88 + . . scaffold1630 TRF Tandem_Repeat 231896 231932 74 + . . scaffold1630 GLEAN promoter 233185 234184 1 + . ID=CGI_10013426; scaffold1630 GLEAN mRNA 234185 235594 1 + . ID=CGI_10013426; scaffold1630 TRF Tandem_Repeat 237397 237432 63 + . . scaffold1630 TRF Tandem_Repeat 251827 251881 101 + . . scaffold1630 TRF Tandem_Repeat 252034 252090 87 + . . scaffold1630 TRF Tandem_Repeat 260244 260283 80 + . . scaffold1630 WUBlastX LINE_L1-Tx1 293842 294828 99 + . . scaffold1630 GLEAN mRNA 297875 312372 0.980735 - . ID=CGI_10013427; scaffold1630 TRF Tandem_Repeat 298974 299045 144 + . . scaffold1630 GLEAN promoter 312373 313372 0.980735 - . ID=CGI_10013427; scaffold1630 TRF Tandem_Repeat 312784 312853 104 + . . scaffold1630 TRF Tandem_Repeat 315473 315654 186 + . . scaffold1630 GLEAN promoter 318085 319084 0.999998 + . ID=CGI_10013428; scaffold1630 GLEAN mRNA 319085 325503 0.999998 + . ID=CGI_10013428; scaffold1630 TRF Tandem_Repeat 323536 323588 106 + . . scaffold1630 TRF Tandem_Repeat 324244 324684 584 + . . scaffold1630 TRF Tandem_Repeat 325152 325199 96 + . . scaffold1630 GLEAN mRNA 327938 342063 0.987773 - . ID=CGI_10013429; scaffold1630 TRF Tandem_Repeat 329173 329228 94 + . . scaffold1630 TRF Tandem_Repeat 339774 339798 50 + . . scaffold1630 GLEAN promoter 342064 343063 0.987773 - . ID=CGI_10013429; scaffold1630 TRF Tandem_Repeat 351009 351097 72 + . . scaffold1630 TRF Tandem_Repeat 354348 354384 56 + . . scaffold1630 TRF Tandem_Repeat 354348 354428 67 + . . scaffold1630 TRF Tandem_Repeat 354352 354424 76 + . . scaffold1630 TRF Tandem_Repeat 354374 354424 66 + . . scaffold1630 TRF Tandem_Repeat 355050 356492 2060 + . . scaffold1631 TRF Tandem_Repeat 3144 3174 62 + . . scaffold1631 TRF Tandem_Repeat 4270 4312 77 + . . scaffold1631 TRF Tandem_Repeat 6067 6116 55 + . . scaffold1631 TRF Tandem_Repeat 6513 6588 152 + . . scaffold1631 WUBlastX LINE_L1 9734 9886 27 - . . scaffold1631 WUBlastX LINE_L1 10237 10323 20 - . . scaffold1631 WUBlastX LINE_L1 10473 10688 61 - . . scaffold1631 WUBlastX LINE_L1-Tx1 14204 14368 57 - . . scaffold1631 WUBlastX LINE_L1 14263 14691 107 - . . scaffold1631 WUBlastX LINE_L1 14338 14700 213 - . . scaffold1631 WUBlastX LINE_L1-Tx1 14356 14850 210 - . . scaffold1631 WUBlastX LINE_L1-Tx1 14365 15075 123 - . . scaffold1631 TRF Tandem_Repeat 15150 15205 67 + . . scaffold1631 WUBlastX LINE_L1-Tx1 17092 18060 75 - . . scaffold1631 WUBlastX LINE_L1 17320 18060 125 - . . scaffold1631 TRF Tandem_Repeat 24013 24069 114 + . . scaffold1631 TRF Tandem_Repeat 25802 25835 59 + . . scaffold1631 WUBlastX LINE_L2 26846 27208 50 - . . scaffold1631 WUBlastX DNA_TcMar-Tc1 37155 37388 51 + . . scaffold1631 WUBlastX DNA_TcMar-Tc1 37418 37519 45 + . . scaffold1631 WUBlastX LINE_L1 37748 38245 37 + . . scaffold1631 WUBlastX LINE_L1-Tx1 37859 38245 86 + . . scaffold1631 WUBlastX LINE_L1-Tx1 37859 38557 71 + . . scaffold1631 WUBlastX LINE_L1-Tx1 38708 38779 20 + . . scaffold1631 TRF Tandem_Repeat 43976 44090 178 + . . scaffold1631 WUBlastX LINE_L1-Tx1 45264 45581 29 - . . scaffold1631 WUBlastX LINE_L1 45462 45623 33 - . . scaffold1631 WUBlastX LINE_L1-Tx1 45617 45937 71 - . . scaffold1631 WUBlastX LINE_L1 45960 46442 52 - . . scaffold1631 WUBlastX LINE_L1-Tx1 46480 47286 329 - . . scaffold1631 WUBlastX LINE_RTE-BovB 47068 47343 55 - . . scaffold1631 TRF Tandem_Repeat 50099 50130 55 + . . scaffold1631 TRF Tandem_Repeat 50540 50568 58 + . . scaffold1631 TRF Tandem_Repeat 50570 50608 78 + . . scaffold1631 TRF Tandem_Repeat 62336 62385 100 + . . scaffold1631 WUBlastX DNA_Maverick 70886 71179 137 - . . scaffold1631 WUBlastX DNA_Maverick 71220 71471 25 - . . scaffold1631 WUBlastX DNA_Maverick 71449 72240 119 - . . scaffold1631 WUBlastX DNA_IS4EU 95837 96307 255 - . . scaffold1631 WUBlastX DNA_IS4EU 95855 96430 136 - . . scaffold1631 WUBlastX DNA_IS4EU 96273 96686 47 - . . scaffold1631 WUBlastX DNA_Kolobok-IS4 97348 97539 47 - . . scaffold1631 TRF Tandem_Repeat 97889 97926 76 + . . scaffold1631 GLEAN promoter 118733 119732 1 + . ID=CGI_10007199; scaffold1631 GLEAN mRNA 119733 120128 1 + . ID=CGI_10007199; scaffold1631 GLEAN mRNA 121726 126162 0.999974 - . ID=CGI_10007200; scaffold1631 GLEAN promoter 126163 127162 0.999974 - . ID=CGI_10007200; scaffold1631 GLEAN mRNA 126164 142051 0.997836 - . ID=CGI_10007201; scaffold1631 TRF Tandem_Repeat 132007 132052 92 + . . scaffold1631 TRF Tandem_Repeat 137286 137344 109 + . . scaffold1631 TRF Tandem_Repeat 139126 139224 110 + . . scaffold1631 GLEAN promoter 142052 143051 0.997836 - . ID=CGI_10007201; scaffold1631 TRF Tandem_Repeat 144337 144403 89 + . . scaffold1631 GLEAN mRNA 146479 157271 0.998023 - . ID=CGI_10007202; scaffold1631 GLEAN promoter 157272 158271 0.998023 - . ID=CGI_10007202; scaffold1631 GLEAN mRNA 157940 162964 0.998023 - . ID=CGI_10007203; scaffold1631 GLEAN promoter 162965 163964 0.998023 - . ID=CGI_10007203; scaffold1631 GLEAN mRNA 163195 172842 0.969546 - . ID=CGI_10007204; scaffold1631 WUBlastX LTR_Pao 166002 167453 1164 - . . scaffold1631 WUBlastX LTR_Pao 167350 168267 610 - . . scaffold1631 GLEAN promoter 172843 173593 0.969546 - . ID=CGI_10007204; scaffold1631 TRF Tandem_Repeat 173425 173551 211 + . . scaffold1631 TRF Tandem_Repeat 173444 173583 178 + . . scaffold1632 WUBlastX DNA_Harbinger 17177 17428 88 + . . scaffold1632 WUBlastX DNA_Harbinger 17428 17895 153 + . . scaffold1632 GLEAN mRNA 18276 18548 0.618222 - . ID=CGI_10008046; scaffold1632 GLEAN promoter 18549 19548 0.618222 - . ID=CGI_10008046; scaffold1632 GLEAN mRNA 18629 19033 0.999984 - . ID=CGI_10008047; scaffold1632 GLEAN promoter 19034 20033 0.999984 - . ID=CGI_10008047; scaffold1632 GLEAN promoter 28818 29817 1 + . ID=CGI_10008049; scaffold1632 GLEAN mRNA 29740 29907 0.618186 - . ID=CGI_10008048; scaffold1632 GLEAN mRNA 29818 30894 1 + . ID=CGI_10008049; scaffold1632 GLEAN promoter 29908 30907 0.618186 - . ID=CGI_10008048; scaffold1632 WUBlastX LINE_CR1 36176 36604 34 + . . scaffold1632 WUBlastX LINE_Proto2 36287 38263 253 + . . scaffold1632 WUBlastX LINE_I-Nimb 36797 38239 260 + . . scaffold1632 WUBlastX LINE_CR1-L2 37187 38215 265 + . . scaffold1632 WUBlastX LINE_L1 37379 38479 111 + . . scaffold1632 WUBlastX LINE_RTE-X 37382 38239 287 + . . scaffold1632 WUBlastX LINE_RTE-X 37535 38239 289 + . . scaffold1632 WUBlastX LINE_RTE-X 38292 38960 79 + . . scaffold1632 WUBlastX LINE_RTE-X 38292 38855 106 + . . scaffold1632 WUBlastX LINE_RTE-BovB 38619 39110 24 + . . scaffold1632 WUBlastX LINE_RTE-X 51720 52850 220 - . . scaffold1632 WUBlastX LINE_RTE-X 52041 52823 222 - . . scaffold1632 WUBlastX LINE_CR1 52389 52958 76 - . . scaffold1632 TRF Tandem_Repeat 58595 58639 81 + . . scaffold1632 TRF Tandem_Repeat 62201 62260 120 + . . scaffold1632 TRF Tandem_Repeat 70194 70234 82 + . . scaffold1632 TRF Tandem_Repeat 72365 72395 62 + . . scaffold1632 TRF Tandem_Repeat 76920 76969 100 + . . scaffold1632 GLEAN promoter 86121 87120 0.663431 + . ID=CGI_10008050; scaffold1632 GLEAN mRNA 87121 92672 0.663431 + . ID=CGI_10008050; scaffold1632 GLEAN promoter 93420 94419 0.998817 + . ID=CGI_10008051; scaffold1632 GLEAN mRNA 94420 99469 0.998817 + . ID=CGI_10008051; scaffold1632 TRF Tandem_Repeat 103860 103901 84 + . . scaffold1632 TRF Tandem_Repeat 115097 115136 80 + . . scaffold1632 TRF Tandem_Repeat 116122 116162 75 + . . scaffold1632 TRF Tandem_Repeat 129096 129122 54 + . . scaffold1632 GLEAN mRNA 133326 135100 1 - . ID=CGI_10008052; scaffold1632 GLEAN promoter 135101 136100 1 - . ID=CGI_10008052; scaffold1632 TRF Tandem_Repeat 142001 142097 96 + . . scaffold1632 TRF Tandem_Repeat 159147 159424 448 + . . scaffold1632 TRF Tandem_Repeat 165309 165419 181 + . . scaffold1632 GLEAN mRNA 166355 195642 0.999947 - . ID=CGI_10008053; scaffold1632 TRF Tandem_Repeat 171154 171188 70 + . . scaffold1632 TRF Tandem_Repeat 178419 178462 72 + . . scaffold1632 TRF Tandem_Repeat 181555 181888 515 + . . scaffold1632 TRF Tandem_Repeat 193219 193272 60 + . . scaffold1632 TRF Tandem_Repeat 193219 193268 55 + . . scaffold1632 GLEAN promoter 195367 196366 0.271725 + . ID=CGI_10008054; scaffold1632 GLEAN promoter 195643 196642 0.999947 - . ID=CGI_10008053; scaffold1632 GLEAN mRNA 196367 197533 0.271725 + . ID=CGI_10008054; scaffold1633 WUBlastX LINE_L1 113 538 61 + . . scaffold1633 WUBlastX LINE_L1-Tx1 236 547 179 + . . scaffold1633 WUBlastX LINE_L1 284 748 105 + . . scaffold1633 WUBlastX LINE_L1 284 664 151 + . . scaffold1633 WUBlastX LINE_L1-Tx1 287 547 195 + . . scaffold1633 WUBlastX LINE_L1 3093 3185 35 + . . scaffold1633 WUBlastX LINE_L1-Tx1 3156 3245 35 + . . scaffold1633 WUBlastX LINE_L1-Tx1 3247 4659 177 + . . scaffold1633 TRF Tandem_Repeat 13815 13859 74 + . . scaffold1633 TRF Tandem_Repeat 21267 21312 74 + . . scaffold1633 TRF Tandem_Repeat 30150 30199 66 + . . scaffold1633 GLEAN promoter 33074 34073 0.999673 + . ID=CGI_10012653; scaffold1633 GLEAN mRNA 34074 44823 0.999673 + . ID=CGI_10012653; scaffold1633 TRF Tandem_Repeat 35431 35493 94 + . . scaffold1633 TRF Tandem_Repeat 38972 39039 136 + . . scaffold1633 TRF Tandem_Repeat 54869 54895 54 + . . scaffold1633 TRF Tandem_Repeat 67262 67303 84 + . . scaffold1633 TRF Tandem_Repeat 67709 67780 144 + . . scaffold1633 TRF Tandem_Repeat 70351 70401 77 + . . scaffold1633 TRF Tandem_Repeat 70780 70814 63 + . . scaffold1633 TRF Tandem_Repeat 77566 77619 99 + . . scaffold1633 TRF Tandem_Repeat 91102 91875 984 + . . scaffold1633 TRF Tandem_Repeat 99949 99985 74 + . . scaffold1633 TRF Tandem_Repeat 106162 106196 61 + . . scaffold1633 TRF Tandem_Repeat 123711 125326 1808 + . . scaffold1633 WUBlastX LTR_Ngaro 128885 129700 217 + . . scaffold1633 TRF Tandem_Repeat 130173 130595 358 + . . scaffold1633 TRF Tandem_Repeat 131856 131955 60 + . . scaffold1633 TRF Tandem_Repeat 131859 131955 115 + . . scaffold1633 TRF Tandem_Repeat 172585 172637 106 + . . scaffold1633 WUBlastX LINE_RTE-BovB 190608 191834 1140 - . . scaffold1633 WUBlastX LINE_RTE-BovB 191822 193048 946 - . . scaffold1633 WUBlastX LINE_RTE-BovB 192959 193369 321 - . . scaffold1633 WUBlastX LINE_RTE-BovB 193327 193890 380 - . . scaffold1633 WUBlastX LINE_L2-Hydra 195781 195975 26 + . . scaffold1633 WUBlastX LINE_L2 196131 196223 23 + . . scaffold1633 WUBlastX LINE_L2-Hydra 196340 197233 80 + . . scaffold1633 WUBlastX LINE_L1-Tx1 196487 198496 750 + . . scaffold1633 TRF Tandem_Repeat 207967 208016 100 + . . scaffold1633 TRF Tandem_Repeat 216960 216998 50 + . . scaffold1633 TRF Tandem_Repeat 216960 217018 79 + . . scaffold1633 GLEAN mRNA 250875 253017 0.902222 - . ID=CGI_10012654; scaffold1633 GLEAN promoter 253018 254017 0.902222 - . ID=CGI_10012654; scaffold1633 GLEAN promoter 256815 257814 0.989981 + . ID=CGI_10012655; scaffold1633 GLEAN mRNA 257815 266261 0.989981 + . ID=CGI_10012655; scaffold1633 TRF Tandem_Repeat 259941 259990 59 + . . scaffold1633 TRF Tandem_Repeat 261505 261569 130 + . . scaffold1633 TRF Tandem_Repeat 262032 263002 1377 + . . scaffold1633 WUBlastX DNA_hAT-Tip100 280374 280535 110 - . . scaffold1633 WUBlastX DNA_hAT-Tip100 280380 280682 62 - . . scaffold1633 WUBlastX DNA_hAT-Tip100 280389 280571 78 - . . scaffold1633 WUBlastX DNA_hAT-Tip100 281997 282299 93 - . . scaffold1633 WUBlastX DNA_hAT-Tip100 282497 282739 32 - . . scaffold1633 WUBlastX DNA_hAT-Tip100 282614 282838 65 - . . scaffold1633 WUBlastX DNA_hAT-Tip100 282614 282739 69 - . . scaffold1633 WUBlastX DNA_Harbinger 288337 288423 53 - . . scaffold1633 WUBlastX DNA_Harbinger 288503 288724 106 - . . scaffold1633 WUBlastX DNA_Harbinger 288530 288706 132 - . . scaffold1633 WUBlastX DNA_Harbinger 288884 289132 25 - . . scaffold1633 WUBlastX DNA_Harbinger 288887 289036 46 - . . scaffold1633 TRF Tandem_Repeat 289658 289689 64 + . . scaffold1633 TRF Tandem_Repeat 294157 294183 54 + . . scaffold1633 WUBlastX DNA_Crypton 295889 296347 72 - . . scaffold1633 WUBlastX DNA_Crypton 296051 296344 96 - . . scaffold1633 WUBlastX DNA_Crypton 296388 297038 93 - . . scaffold1633 WUBlastX DNA_hAT-Tip100 303696 303917 45 - . . scaffold1633 WUBlastX DNA_hAT-Blackja 306950 307582 130 - . . scaffold1633 WUBlastX LTR_DIRS 312804 313172 142 + . . scaffold1633 WUBlastX LTR_DIRS 313424 313840 65 + . . scaffold1633 TRF Tandem_Repeat 320309 320364 71 + . . scaffold1633 TRF Tandem_Repeat 320313 320367 65 + . . scaffold1633 GLEAN promoter 322350 323349 0.971024 + . ID=CGI_10012656; scaffold1633 GLEAN mRNA 323350 331983 0.971024 + . ID=CGI_10012656; scaffold1634 GLEAN promoter 111 1110 1 + . ID=CGI_10005149; scaffold1634 GLEAN mRNA 1111 13257 1 + . ID=CGI_10005149; scaffold1634 TRF Tandem_Repeat 3918 3960 86 + . . scaffold1634 TRF Tandem_Repeat 4652 4687 72 + . . scaffold1634 TRF Tandem_Repeat 7767 7835 57 + . . scaffold1634 TRF Tandem_Repeat 12717 12766 66 + . . scaffold1634 TRF Tandem_Repeat 12721 12767 78 + . . scaffold1634 GLEAN mRNA 15859 29432 0.999999 - . ID=CGI_10005150; scaffold1634 TRF Tandem_Repeat 20816 20850 61 + . . scaffold1634 WUBlastX LINE_Penelope 25964 26149 37 - . . scaffold1634 GLEAN promoter 29433 30432 0.999999 - . ID=CGI_10005150; scaffold1634 WUBlastX DNA_Kolobok-IS4 39669 40280 102 + . . scaffold1634 WUBlastX DNA_IS4EU 39873 40235 124 + . . scaffold1634 WUBlastX DNA_IS4EU 40543 41553 269 + . . scaffold1634 WUBlastX DNA_Kolobok-IS4 46150 47214 502 - . . scaffold1634 WUBlastX DNA_P 47856 48023 23 - . . scaffold1634 WUBlastX LTR_Gypsy 51889 51987 20 + . . scaffold1634 WUBlastX LTR_Gypsy 51949 52284 85 + . . scaffold1634 WUBlastX LTR_Gypsy 52653 53093 147 + . . scaffold1634 WUBlastX LTR_Gypsy-Cigr 52782 53327 283 + . . scaffold1634 WUBlastX LINE_L1-Tx1 57959 58648 93 - . . scaffold1634 WUBlastX LINE_L1 58373 58741 76 - . . scaffold1634 WUBlastX LINE_L1-Tx1 59453 60592 623 - . . scaffold1634 WUBlastX LINE_L1 60600 60920 117 - . . scaffold1634 WUBlastX LINE_L1-Tx1 60943 61200 70 - . . scaffold1634 WUBlastX LINE_L1-Tx1 61205 61474 25 - . . scaffold1634 WUBlastX LINE_L1-Tx1 61235 61420 59 - . . scaffold1634 WUBlastX LINE_L1-Tx1 61241 61456 28 - . . scaffold1634 TRF Tandem_Repeat 64231 64299 129 + . . scaffold1634 TRF Tandem_Repeat 68137 68194 73 + . . scaffold1634 TRF Tandem_Repeat 68140 68193 56 + . . scaffold1634 WUBlastX LTR_DIRS 69682 70152 109 + . . scaffold1634 WUBlastX LTR_Gypsy 70250 70363 27 + . . scaffold1634 WUBlastX LTR_DIRS 70491 70670 51 + . . scaffold1634 WUBlastX LTR_DIRS 70672 70746 51 + . . scaffold1634 WUBlastX LTR_DIRS 70760 71404 143 + . . scaffold1634 WUBlastX LTR_DIRS 70760 71275 214 + . . scaffold1634 WUBlastX LTR_DIRS 71296 71511 20 + . . scaffold1634 TRF Tandem_Repeat 71656 71690 70 + . . scaffold1634 GLEAN promoter 78459 79458 0.617782 + . ID=CGI_10005151; scaffold1634 GLEAN mRNA 79459 79677 0.617782 + . ID=CGI_10005151; scaffold1634 WUBlastX LTR_Gypsy 79717 79881 80 + . . scaffold1634 WUBlastX LTR_Gypsy 79904 80365 41 + . . scaffold1634 WUBlastX LTR_Pao 80475 80582 20 + . . scaffold1634 WUBlastX LTR_Gypsy 81321 81485 68 + . . scaffold1634 GLEAN promoter 81464 82463 0.992943 + . ID=CGI_10005152; scaffold1634 GLEAN mRNA 82464 85496 0.992943 + . ID=CGI_10005152; scaffold1634 WUBlastX LTR_Ngaro 83395 83745 90 - . . scaffold1634 WUBlastX LTR_Ngaro 83782 84510 526 - . . scaffold1634 WUBlastX LTR_Ngaro 84558 85061 87 - . . scaffold1634 WUBlastX LTR_Ngaro 84747 85079 155 - . . scaffold1634 WUBlastX LTR_Ngaro 85112 85216 59 - . . scaffold1634 WUBlastX LTR_Gypsy 85854 86132 36 + . . scaffold1634 WUBlastX LTR_Gypsy 85959 86132 54 + . . scaffold1634 WUBlastX LTR_Gypsy 86034 86132 58 + . . scaffold1634 WUBlastX LTR_Gypsy 86117 87604 687 + . . scaffold1634 WUBlastX LTR_Gypsy-Cigr 86117 87376 828 + . . scaffold1634 WUBlastX LTR_Copia 87681 87983 66 + . . scaffold1634 WUBlastX LTR_Gypsy 87732 88028 115 + . . scaffold1634 WUBlastX LTR_Gypsy-Cigr 87732 87983 116 + . . scaffold1634 WUBlastX LTR_Gypsy 87980 88087 55 + . . scaffold1634 WUBlastX LTR_Gypsy 88544 88777 59 + . . scaffold1634 WUBlastX LTR_Gypsy 88652 88777 108 + . . scaffold1634 WUBlastX LTR_Gypsy 88652 88843 41 + . . scaffold1634 GLEAN promoter 88739 89738 0.998588 + . ID=CGI_10005153; scaffold1634 WUBlastX LTR_Gypsy 88836 89195 65 + . . scaffold1634 GLEAN mRNA 89739 98250 0.998588 + . ID=CGI_10005153; scaffold1634 WUBlastX DNA_TcMar-Fot1 91308 91637 47 - . . scaffold1634 WUBlastX DNA_TcMar-Fot1 91374 91628 100 - . . scaffold1634 WUBlastX DNA_TcMar-Fot1 91651 91839 44 - . . scaffold1634 TRF Tandem_Repeat 98555 98596 61 + . . scaffold1634 WUBlastX LTR_Copia 100090 100215 36 - . . scaffold1634 GLEAN mRNA 100114 110322 0.998817 - . ID=CGI_10005154; scaffold1634 GLEAN promoter 110323 111322 0.998817 - . ID=CGI_10005154; scaffold1634 GLEAN mRNA 115536 120116 0.777738 - . ID=CGI_10005155; scaffold1634 TRF Tandem_Repeat 118104 118142 78 + . . scaffold1634 TRF Tandem_Repeat 118374 118411 76 + . . scaffold1634 TRF Tandem_Repeat 119377 119415 78 + . . scaffold1634 GLEAN promoter 120117 120594 0.777738 - . ID=CGI_10005155; scaffold1635 TRF Tandem_Repeat 4797 4836 71 + . . scaffold1635 TRF Tandem_Repeat 7048 7124 154 + . . scaffold1635 WUBlastX LINE_L2 9452 9919 185 - . . scaffold1635 WUBlastX LINE_CR1-L2 9452 10018 57 - . . scaffold1635 TRF Tandem_Repeat 10646 10778 164 + . . scaffold1635 TRF Tandem_Repeat 10815 10983 131 + . . scaffold1635 TRF Tandem_Repeat 16561 16613 106 + . . scaffold1635 GLEAN mRNA 17821 27235 0.621954 - . ID=CGI_10001870; scaffold1635 TRF Tandem_Repeat 23116 23152 74 + . . scaffold1635 GLEAN promoter 27236 28235 0.621954 - . ID=CGI_10001870; scaffold1635 WUBlastX DNA_TcMar-Tc1 28830 29687 89 + . . scaffold1635 WUBlastX DNA_TcMar-Tc1 29019 29654 93 + . . scaffold1635 WUBlastX DNA_TcMar-Tc1 29133 29729 124 + . . scaffold1635 WUBlastX DNA_TcMar-Tc1 29202 29654 168 + . . scaffold1635 WUBlastX DNA_TcMar-Tc1 29699 29827 56 + . . scaffold1635 TRF Tandem_Repeat 32238 32262 50 + . . scaffold1636 WUBlastX LTR_Gypsy 5215 6234 63 + . . scaffold1636 WUBlastX LTR_Gypsy 5461 6228 386 + . . scaffold1636 WUBlastX LTR_Gypsy 5515 6375 102 + . . scaffold1636 WUBlastX LTR_Gypsy 6549 6974 250 + . . scaffold1637 TRF Tandem_Repeat 4376 4407 64 + . . scaffold1637 GLEAN promoter 5795 6794 0.409292 + . ID=CGI_10010272; scaffold1637 GLEAN mRNA 6795 17183 0.409292 + . ID=CGI_10010272; scaffold1637 TRF Tandem_Repeat 10603 10651 57 + . . scaffold1637 WUBlastX LTR_Gypsy 13563 14048 40 + . . scaffold1637 GLEAN mRNA 16884 32061 0.997837 - . ID=CGI_10010273; scaffold1637 GLEAN promoter 31307 32306 0.825376 + . ID=CGI_10010274; scaffold1637 GLEAN promoter 32062 33061 0.997837 - . ID=CGI_10010273; scaffold1637 GLEAN mRNA 32307 33563 0.825376 + . ID=CGI_10010274; scaffold1637 GLEAN mRNA 40155 58210 0.998439 - . ID=CGI_10010275; scaffold1637 TRF Tandem_Repeat 43707 43861 247 + . . scaffold1637 GLEAN promoter 58211 59210 0.998439 - . ID=CGI_10010275; scaffold1637 GLEAN mRNA 58419 71307 0.646323 - . ID=CGI_10010276; scaffold1637 TRF Tandem_Repeat 70400 70431 64 + . . scaffold1637 GLEAN promoter 71308 72307 0.646323 - . ID=CGI_10010276; scaffold1637 TRF Tandem_Repeat 80231 80265 61 + . . scaffold1637 TRF Tandem_Repeat 80610 80673 128 + . . scaffold1637 TRF Tandem_Repeat 88860 88894 63 + . . scaffold1637 GLEAN mRNA 94610 104477 0.985176 - . ID=CGI_10010277; scaffold1637 TRF Tandem_Repeat 101421 101497 154 + . . scaffold1637 GLEAN promoter 104478 105477 0.985176 - . ID=CGI_10010277; scaffold1637 TRF Tandem_Repeat 112313 112353 82 + . . scaffold1637 GLEAN mRNA 116866 117189 1 - . ID=CGI_10010278; scaffold1637 GLEAN promoter 117190 118189 1 - . ID=CGI_10010278; scaffold1637 TRF Tandem_Repeat 135361 135389 58 + . . scaffold1637 TRF Tandem_Repeat 137745 137798 92 + . . scaffold1637 GLEAN mRNA 146684 191770 0.63167 - . ID=CGI_10010279; scaffold1637 TRF Tandem_Repeat 152499 153405 1235 + . . scaffold1637 TRF Tandem_Repeat 154028 154074 67 + . . scaffold1637 TRF Tandem_Repeat 162592 162625 59 + . . scaffold1637 TRF Tandem_Repeat 165882 165911 51 + . . scaffold1637 WUBlastX DNA_TcMar-Marin 185799 186137 55 + . . scaffold1637 TRF Tandem_Repeat 190628 190691 83 + . . scaffold1637 GLEAN promoter 191771 192770 0.63167 - . ID=CGI_10010279; scaffold1637 TRF Tandem_Repeat 194658 195237 401 + . . scaffold1637 TRF Tandem_Repeat 194802 195161 292 + . . scaffold1637 GLEAN mRNA 199308 205104 0.999507 - . ID=CGI_10010280; scaffold1637 GLEAN promoter 205105 206104 0.999507 - . ID=CGI_10010280; scaffold1637 GLEAN mRNA 205459 211498 0.987403 - . ID=CGI_10010281; scaffold1637 GLEAN promoter 211499 212498 0.987403 - . ID=CGI_10010281; scaffold1637 GLEAN mRNA 213906 231047 0.783977 - . ID=CGI_10010282; scaffold1637 TRF Tandem_Repeat 223197 223233 65 + . . scaffold1637 TRF Tandem_Repeat 227646 227883 210 + . . scaffold1637 GLEAN promoter 231048 232047 0.783977 - . ID=CGI_10010282; scaffold1637 GLEAN promoter 235552 236551 0.999376 + . ID=CGI_10010283; scaffold1637 GLEAN mRNA 236552 237253 0.999376 + . ID=CGI_10010283; scaffold1637 TRF Tandem_Repeat 237741 237792 50 + . . scaffold1637 TRF Tandem_Repeat 237741 237779 51 + . . scaffold1637 TRF Tandem_Repeat 239394 239457 128 + . . scaffold1637 GLEAN promoter 242110 243109 1 + . ID=CGI_10010284; scaffold1637 GLEAN mRNA 243110 258314 1 + . ID=CGI_10010284; scaffold1637 TRF Tandem_Repeat 255518 255572 74 + . . scaffold1637 TRF Tandem_Repeat 255522 255556 70 + . . scaffold1637 TRF Tandem_Repeat 259685 259727 86 + . . scaffold1637 TRF Tandem_Repeat 259805 259854 100 + . . scaffold1638 TRF Tandem_Repeat 29897 29944 82 + . . scaffold1638 TRF Tandem_Repeat 31598 31661 128 + . . scaffold1638 TRF Tandem_Repeat 33195 33227 66 + . . scaffold1638 TRF Tandem_Repeat 33573 33619 94 + . . scaffold1638 TRF Tandem_Repeat 40186 40227 84 + . . scaffold1638 TRF Tandem_Repeat 40227 40269 86 + . . scaffold1638 WUBlastX LINE_L1 43098 43484 41 + . . scaffold1638 WUBlastX LINE_L1-Tx1 43167 43484 77 + . . scaffold1638 WUBlastX LINE_L1 43457 43561 28 + . . scaffold1638 WUBlastX LINE_RTE-X 44797 44895 21 - . . scaffold1638 WUBlastX LINE_RTE-X 44815 44928 50 - . . scaffold1638 WUBlastX LINE_RTE-X 44940 45473 142 - . . scaffold1638 TRF Tandem_Repeat 54289 54317 58 + . . scaffold1638 TRF Tandem_Repeat 58977 59022 83 + . . scaffold1638 TRF Tandem_Repeat 64120 64186 134 + . . scaffold1638 GLEAN promoter 65773 66772 1 + . ID=CGI_10007421; scaffold1638 GLEAN mRNA 66773 69771 1 + . ID=CGI_10007421; scaffold1638 TRF Tandem_Repeat 67884 67926 86 + . . scaffold1638 GLEAN mRNA 75565 82107 0.999996 - . ID=CGI_10007422; scaffold1638 TRF Tandem_Repeat 76304 76342 78 + . . scaffold1638 TRF Tandem_Repeat 79813 79865 92 + . . scaffold1638 GLEAN promoter 82108 83107 0.999996 - . ID=CGI_10007422; scaffold1638 TRF Tandem_Repeat 88173 88208 72 + . . scaffold1638 GLEAN promoter 108836 109835 1 + . ID=CGI_10007423; scaffold1638 WUBlastX LINE_RTE-BovB 109315 109470 65 - . . scaffold1638 WUBlastX LINE_RTE-BovB 109318 109443 66 - . . scaffold1638 GLEAN mRNA 109836 121441 1 + . ID=CGI_10007423; scaffold1638 TRF Tandem_Repeat 123342 123488 75 + . . scaffold1638 TRF Tandem_Repeat 123404 123552 90 + . . scaffold1638 GLEAN mRNA 125146 126939 0.999984 - . ID=CGI_10007424; scaffold1638 GLEAN promoter 126640 127639 0.999676 + . ID=CGI_10007425; scaffold1638 GLEAN promoter 126940 127939 0.999984 - . ID=CGI_10007424; scaffold1638 GLEAN mRNA 127640 129695 0.999676 + . ID=CGI_10007425; scaffold1638 WUBlastX LTR_Gypsy 129138 129665 25 + . . scaffold1638 GLEAN promoter 129635 130634 0.999984 + . ID=CGI_10007426; scaffold1638 GLEAN mRNA 130635 131702 0.999984 + . ID=CGI_10007426; scaffold1638 WUBlastX LTR_Gypsy 131145 131672 25 + . . scaffold1638 TRF Tandem_Repeat 142307 142369 126 + . . scaffold1638 WUBlastX LTR_Gypsy 160933 161355 70 + . . scaffold1638 WUBlastX LTR_Gypsy 165199 165474 50 + . . scaffold1638 WUBlastX LTR_Gypsy 165244 165471 74 + . . scaffold1638 WUBlastX LTR_Gypsy-Cigr 165493 165936 82 + . . scaffold1638 WUBlastX LTR_Gypsy-Cigr 165811 165945 96 + . . scaffold1638 WUBlastX LTR_Gypsy-Cigr 166025 166165 35 + . . scaffold1638 TRF Tandem_Repeat 174033 174259 361 + . . scaffold1638 TRF Tandem_Repeat 175150 175401 423 + . . scaffold1638 GLEAN promoter 176673 177672 0.746957 + . ID=CGI_10007428; scaffold1638 GLEAN promoter 176914 177913 0.997171 + . ID=CGI_10007429; scaffold1638 GLEAN mRNA 177234 177626 0.999943 - . ID=CGI_10007427; scaffold1638 GLEAN promoter 177627 178626 0.999943 - . ID=CGI_10007427; scaffold1638 GLEAN mRNA 177673 177894 0.746957 + . ID=CGI_10007428; scaffold1638 GLEAN mRNA 177914 178306 0.997171 + . ID=CGI_10007429; scaffold1639 GLEAN mRNA 819 3853 1 - . ID=CGI_10005436; scaffold1639 GLEAN promoter 3854 4853 1 - . ID=CGI_10005436; scaffold1639 GLEAN promoter 26466 27465 0.863535 + . ID=CGI_10005437; scaffold1639 GLEAN mRNA 27466 42582 0.863535 + . ID=CGI_10005437; scaffold1639 TRF Tandem_Repeat 30174 30209 54 + . . scaffold1639 WUBlastX DNA_Harbinger 34573 35022 60 + . . scaffold1639 WUBlastX DNA_Harbinger 34901 35188 54 + . . scaffold1639 WUBlastX DNA_Harbinger 35354 35710 103 + . . scaffold1639 WUBlastX DNA_TcMar-Tc1 37452 37826 106 + . . scaffold1639 WUBlastX DNA_TcMar-Tc1 37584 37826 120 + . . scaffold1639 TRF Tandem_Repeat 54436 54875 605 + . . scaffold1639 TRF Tandem_Repeat 66553 66606 99 + . . scaffold1639 TRF Tandem_Repeat 68072 68125 108 + . . scaffold1639 WUBlastX DNA_Kolobok-Hyd 73342 73872 83 + . . scaffold1639 WUBlastX DNA_Kolobok-Hyd 73342 74184 65 + . . scaffold1639 WUBlastX DNA_Kolobok-Hyd 74433 74615 29 + . . scaffold1639 GLEAN mRNA 82644 83780 1 - . ID=CGI_10005439; scaffold1639 WUBlastX DNA_Kolobok-IS4 82659 83189 42 - . . scaffold1639 WUBlastX DNA_IS4EU 83241 83354 38 - . . scaffold1639 WUBlastX DNA_IS4EU 83460 83885 86 - . . scaffold1639 GLEAN promoter 83781 84780 1 - . ID=CGI_10005439; scaffold1639 GLEAN mRNA 83815 84948 1 - . ID=CGI_10005440; scaffold1639 GLEAN promoter 84949 85948 1 - . ID=CGI_10005440; scaffold1639 WUBlastX LINE_L1-Tx1 86340 86852 131 - . . scaffold1639 WUBlastX LINE_L1 86532 86969 41 - . . scaffold1639 GLEAN mRNA 88868 89059 0.768365 - . ID=CGI_10005441; scaffold1639 GLEAN promoter 89060 90059 0.768365 - . ID=CGI_10005441; scaffold1639 WUBlastX DNA_Maverick 118238 118528 45 + . . scaffold1639 GLEAN promoter 118718 119717 0.776794 + . ID=CGI_10005442; scaffold1639 GLEAN mRNA 119718 119924 0.776794 + . ID=CGI_10005442; scaffold1639 GLEAN mRNA 120498 127273 1 - . ID=CGI_10005443; scaffold1639 WUBlastX DNA_Maverick 123984 124109 38 - . . scaffold1639 TRF Tandem_Repeat 126207 126256 55 + . . scaffold1639 GLEAN promoter 127274 127541 1 - . ID=CGI_10005443; scaffold164 TRF Tandem_Repeat 553 593 64 + . . scaffold164 TRF Tandem_Repeat 6460 6525 132 + . . scaffold164 TRF Tandem_Repeat 37206 37267 94 + . . scaffold164 GLEAN mRNA 40628 54980 0.99473 - . ID=CGI_10021845; scaffold164 TRF Tandem_Repeat 48412 48516 94 + . . scaffold164 TRF Tandem_Repeat 49593 49698 107 + . . scaffold164 TRF Tandem_Repeat 52028 52934 1464 + . . scaffold164 WUBlastX LTR_Gypsy 53065 53130 20 - . . scaffold164 WUBlastX LTR_Gypsy 53360 53893 67 - . . scaffold164 WUBlastX LTR_Gypsy 53447 53656 93 - . . scaffold164 WUBlastX LTR_Gypsy 53501 53899 108 - . . scaffold164 WUBlastX LTR_Gypsy 53501 53704 113 - . . scaffold164 WUBlastX LTR_Gypsy 53776 54414 36 - . . scaffold164 WUBlastX LTR_Gypsy 53776 53970 88 - . . scaffold164 WUBlastX LTR_Gypsy 54286 54720 49 - . . scaffold164 WUBlastX LTR_Gypsy 54523 54720 50 - . . scaffold164 GLEAN promoter 54981 55980 0.99473 - . ID=CGI_10021845; scaffold164 WUBlastX LTR_Gypsy 55105 55605 98 - . . scaffold164 WUBlastX LINE_RTE-X 55993 56751 67 - . . scaffold164 WUBlastX LINE_RTE-X 56176 56715 77 - . . scaffold164 GLEAN mRNA 61201 67393 0.999789 - . ID=CGI_10021846; scaffold164 GLEAN promoter 67394 68393 0.999789 - . ID=CGI_10021846; scaffold164 GLEAN mRNA 68785 79328 0.557548 - . ID=CGI_10021847; scaffold164 TRF Tandem_Repeat 72886 73006 57 + . . scaffold164 TRF Tandem_Repeat 74009 74772 849 + . . scaffold164 TRF Tandem_Repeat 74883 74926 70 + . . scaffold164 GLEAN promoter 79329 80328 0.557548 - . ID=CGI_10021847; scaffold164 WUBlastX LTR_Gypsy 81519 82493 170 + . . scaffold164 WUBlastX LTR_Gypsy 81681 82610 252 + . . scaffold164 TRF Tandem_Repeat 92796 92835 80 + . . scaffold164 TRF Tandem_Repeat 118602 118690 108 + . . scaffold164 GLEAN promoter 138006 139005 1 + . ID=CGI_10021848; scaffold164 GLEAN mRNA 139006 140263 1 + . ID=CGI_10021848; scaffold164 TRF Tandem_Repeat 139367 139414 96 + . . scaffold164 TRF Tandem_Repeat 141006 141625 697 + . . scaffold164 TRF Tandem_Repeat 141006 141625 630 + . . scaffold164 TRF Tandem_Repeat 141768 141884 218 + . . scaffold164 GLEAN mRNA 144056 145316 1 - . ID=CGI_10021849; scaffold164 GLEAN promoter 145317 146316 1 - . ID=CGI_10021849; scaffold164 GLEAN promoter 147750 148749 1 + . ID=CGI_10021850; scaffold164 GLEAN mRNA 148750 153163 1 + . ID=CGI_10021850; scaffold164 TRF Tandem_Repeat 150171 150338 201 + . . scaffold164 GLEAN mRNA 155317 161952 0.99935 - . ID=CGI_10021851; scaffold164 GLEAN promoter 161953 162952 0.99935 - . ID=CGI_10021851; scaffold164 GLEAN mRNA 165506 168961 1 - . ID=CGI_10021852; scaffold164 WUBlastX LINE_RTE-X 167302 167973 149 + . . scaffold164 WUBlastX LINE_RTE-X 167392 167961 168 + . . scaffold164 TRF Tandem_Repeat 168315 168343 58 + . . scaffold164 GLEAN promoter 168962 169961 1 - . ID=CGI_10021852; scaffold164 GLEAN promoter 172351 173350 0.999624 + . ID=CGI_10021853; scaffold164 GLEAN mRNA 173351 185164 0.999624 + . ID=CGI_10021853; scaffold164 TRF Tandem_Repeat 177226 177391 163 + . . scaffold164 TRF Tandem_Repeat 177462 177875 250 + . . scaffold164 TRF Tandem_Repeat 177681 177885 238 + . . scaffold164 TRF Tandem_Repeat 179731 179931 384 + . . scaffold164 TRF Tandem_Repeat 187152 187293 119 + . . scaffold164 TRF Tandem_Repeat 189215 190384 1457 + . . scaffold164 TRF Tandem_Repeat 190205 190410 137 + . . scaffold164 GLEAN promoter 191996 192995 0.999992 + . ID=CGI_10021854; scaffold164 GLEAN mRNA 192996 193259 0.999992 + . ID=CGI_10021854; scaffold164 TRF Tandem_Repeat 194382 194413 64 + . . scaffold164 GLEAN promoter 202229 203228 0.998742 + . ID=CGI_10021856; scaffold164 GLEAN mRNA 202372 203071 0.999546 - . ID=CGI_10021855; scaffold164 GLEAN promoter 203072 204071 0.999546 - . ID=CGI_10021855; scaffold164 GLEAN mRNA 203229 226487 0.998742 + . ID=CGI_10021856; scaffold164 TRF Tandem_Repeat 222333 222668 381 + . . scaffold164 GLEAN mRNA 229674 231549 1 - . ID=CGI_10021857; scaffold164 GLEAN promoter 230937 231936 1 + . ID=CGI_10021858; scaffold164 GLEAN promoter 231550 232549 1 - . ID=CGI_10021857; scaffold164 GLEAN mRNA 231937 237484 1 + . ID=CGI_10021858; scaffold164 TRF Tandem_Repeat 236361 236450 173 + . . scaffold164 TRF Tandem_Repeat 237538 237600 126 + . . scaffold164 GLEAN mRNA 240410 241561 0.503348 - . ID=CGI_10021859; scaffold164 GLEAN promoter 241562 242561 0.503348 - . ID=CGI_10021859; scaffold164 TRF Tandem_Repeat 243845 243880 72 + . . scaffold164 GLEAN promoter 245238 246237 0.733056 + . ID=CGI_10021860; scaffold164 GLEAN mRNA 246238 249077 0.733056 + . ID=CGI_10021860; scaffold164 TRF Tandem_Repeat 249484 249515 64 + . . scaffold164 GLEAN mRNA 251123 258886 1 - . ID=CGI_10021861; scaffold164 TRF Tandem_Repeat 255115 255170 112 + . . scaffold164 TRF Tandem_Repeat 257087 257332 402 + . . scaffold164 TRF Tandem_Repeat 257088 257332 157 + . . scaffold164 TRF Tandem_Repeat 258312 258421 202 + . . scaffold164 TRF Tandem_Repeat 258313 258402 63 + . . scaffold164 GLEAN promoter 258887 259886 1 - . ID=CGI_10021861; scaffold164 TRF Tandem_Repeat 265108 265154 94 + . . scaffold164 GLEAN promoter 279280 280279 0.988898 + . ID=CGI_10021862; scaffold164 GLEAN mRNA 280280 286961 0.988898 + . ID=CGI_10021862; scaffold164 TRF Tandem_Repeat 290298 290358 104 + . . scaffold164 TRF Tandem_Repeat 291441 291902 701 + . . scaffold164 TRF Tandem_Repeat 296295 296340 83 + . . scaffold164 GLEAN mRNA 297479 305213 1 - . ID=CGI_10021863; scaffold164 TRF Tandem_Repeat 298897 300179 1237 + . . scaffold164 TRF Tandem_Repeat 298897 300179 1285 + . . scaffold164 TRF Tandem_Repeat 298897 300179 1348 + . . scaffold164 TRF Tandem_Repeat 300705 301655 702 + . . scaffold164 GLEAN promoter 305214 306213 1 - . ID=CGI_10021863; scaffold164 WUBlastX LINE_RTE-BovB 308610 308744 30 - . . scaffold164 WUBlastX LINE_RTE-BovB 309035 309424 120 - . . scaffold164 TRF Tandem_Repeat 309499 309544 92 + . . scaffold164 WUBlastX LINE_RTE-BovB 309958 310248 78 - . . scaffold164 WUBlastX LINE_RTE-BovB 310274 310660 98 - . . scaffold164 WUBlastX LINE_RTE-BovB 310436 310738 24 - . . scaffold164 WUBlastX LINE_RTE-BovB 310846 310977 30 - . . scaffold164 WUBlastX LINE_RTE-BovB 311054 311254 42 - . . scaffold164 WUBlastX LINE_RTE-BovB 311356 311694 99 - . . scaffold164 WUBlastX LINE_RTE-BovB 311356 311823 31 - . . scaffold164 TRF Tandem_Repeat 313355 313407 81 + . . scaffold164 GLEAN mRNA 313773 315279 1 - . ID=CGI_10021864; scaffold164 GLEAN promoter 315280 316279 1 - . ID=CGI_10021864; scaffold164 GLEAN promoter 318973 319972 1 + . ID=CGI_10021865; scaffold164 TRF Tandem_Repeat 319680 319724 81 + . . scaffold164 GLEAN mRNA 319973 325224 1 + . ID=CGI_10021865; scaffold164 TRF Tandem_Repeat 320368 320396 58 + . . scaffold164 TRF Tandem_Repeat 325682 325725 65 + . . scaffold164 GLEAN promoter 325942 326941 0.999991 + . ID=CGI_10021866; scaffold164 GLEAN mRNA 326942 328283 0.999991 + . ID=CGI_10021866; scaffold164 TRF Tandem_Repeat 328403 328487 75 + . . scaffold164 TRF Tandem_Repeat 328560 328774 159 + . . scaffold164 TRF Tandem_Repeat 328907 329019 104 + . . scaffold164 TRF Tandem_Repeat 329158 329325 154 + . . scaffold164 GLEAN mRNA 329695 370658 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 337378 337808 718 + . . scaffold164 TRF Tandem_Repeat 338159 338690 702 + . . scaffold164 TRF Tandem_Repeat 339243 339789 793 + . . scaffold164 TRF Tandem_Repeat 345094 345450 506 + . . scaffold164 TRF Tandem_Repeat 346132 346176 90 + . . scaffold164 TRF Tandem_Repeat 346235 346276 54 + . . scaffold164 TRF Tandem_Repeat 350570 351124 652 + . . scaffold164 TRF Tandem_Repeat 352377 352425 53 + . . scaffold164 TRF Tandem_Repeat 353610 354241 771 + . . scaffold164 TRF Tandem_Repeat 368778 369444 929 + . . scaffold164 TRF Tandem_Repeat 368778 369438 935 + . . scaffold164 TRF Tandem_Repeat 368778 369365 915 + . . scaffold164 GLEAN promoter 370659 371658 0.605961 - . ID=CGI_10021867; scaffold164 TRF Tandem_Repeat 378256 378441 322 + . . scaffold164 TRF Tandem_Repeat 378762 380178 2179 + . . scaffold164 TRF Tandem_Repeat 378762 380199 1961 + . . scaffold164 TRF Tandem_Repeat 378762 380167 1811 + . . scaffold164 TRF Tandem_Repeat 381066 381496 718 + . . scaffold164 TRF Tandem_Repeat 381066 381496 718 + . . scaffold164 TRF Tandem_Repeat 386151 386192 84 + . . scaffold164 TRF Tandem_Repeat 392153 392196 79 + . . scaffold164 TRF Tandem_Repeat 393695 393739 90 + . . scaffold164 TRF Tandem_Repeat 395830 395865 72 + . . scaffold164 TRF Tandem_Repeat 396634 396676 86 + . . scaffold164 TRF Tandem_Repeat 398702 399187 451 + . . scaffold164 TRF Tandem_Repeat 398855 399160 349 + . . scaffold164 TRF Tandem_Repeat 400093 400499 337 + . . scaffold164 TRF Tandem_Repeat 400093 400499 452 + . . scaffold164 TRF Tandem_Repeat 400181 400483 257 + . . scaffold164 TRF Tandem_Repeat 400962 401292 329 + . . scaffold164 TRF Tandem_Repeat 400962 401292 374 + . . scaffold164 TRF Tandem_Repeat 400976 401279 414 + . . scaffold164 TRF Tandem_Repeat 403045 403107 126 + . . scaffold164 TRF Tandem_Repeat 403331 403356 52 + . . scaffold164 GLEAN mRNA 417615 419156 0.935774 - . ID=CGI_10021868; scaffold164 GLEAN promoter 419157 420156 0.935774 - . ID=CGI_10021868; scaffold164 TRF Tandem_Repeat 419505 419552 69 + . . scaffold164 TRF Tandem_Repeat 421142 421478 584 + . . scaffold164 WUBlastX LINE_R2 426688 427233 41 + . . scaffold164 GLEAN promoter 427685 428684 0.999742 + . ID=CGI_10021869; scaffold164 GLEAN mRNA 428685 429059 0.999742 + . ID=CGI_10021869; scaffold164 WUBlastX LINE_Penelope 446881 446955 25 + . . scaffold164 WUBlastX LINE_Penelope 446940 447308 66 + . . scaffold164 WUBlastX LINE_Penelope 449290 449946 56 + . . scaffold164 GLEAN promoter 450551 451550 0.481154 + . ID=CGI_10021870; scaffold164 GLEAN mRNA 451551 453029 0.481154 + . ID=CGI_10021870; scaffold164 TRF Tandem_Repeat 453692 453889 121 + . . scaffold164 WUBlastX LINE_L2 454169 455152 26 + . . scaffold164 WUBlastX LINE_CR1 454331 454921 35 + . . scaffold164 WUBlastX LINE_L2 454457 455443 230 + . . scaffold164 GLEAN mRNA 460036 472158 0.999993 - . ID=CGI_10021871; scaffold164 TRF Tandem_Repeat 462885 463965 1433 + . . scaffold164 TRF Tandem_Repeat 464869 464954 93 + . . scaffold164 TRF Tandem_Repeat 467453 467974 733 + . . scaffold164 TRF Tandem_Repeat 468399 469662 1679 + . . scaffold164 GLEAN promoter 471641 472640 0.999676 + . ID=CGI_10021872; scaffold164 GLEAN promoter 472159 473158 0.999993 - . ID=CGI_10021871; scaffold164 GLEAN mRNA 472641 476419 0.999676 + . ID=CGI_10021872; scaffold164 TRF Tandem_Repeat 477677 477844 291 + . . scaffold164 GLEAN mRNA 478474 484027 0.99818 - . ID=CGI_10021873; scaffold164 TRF Tandem_Repeat 482195 482249 110 + . . scaffold164 GLEAN promoter 484028 485027 0.99818 - . ID=CGI_10021873; scaffold164 GLEAN mRNA 488307 502627 1 - . ID=CGI_10021874; scaffold164 TRF Tandem_Repeat 488454 488693 435 + . . scaffold164 GLEAN promoter 497689 498688 0.558382 + . ID=CGI_10021875; scaffold164 GLEAN mRNA 498689 503171 0.558382 + . ID=CGI_10021875; scaffold164 TRF Tandem_Repeat 499758 499796 78 + . . scaffold164 GLEAN promoter 502628 503627 1 - . ID=CGI_10021874; scaffold164 GLEAN mRNA 504416 507571 1 - . ID=CGI_10021876; scaffold164 GLEAN promoter 507572 508571 1 - . ID=CGI_10021876; scaffold164 GLEAN mRNA 509630 517820 0.54485 - . ID=CGI_10021877; scaffold164 TRF Tandem_Repeat 512305 512751 795 + . . scaffold164 GLEAN promoter 517821 518820 0.54485 - . ID=CGI_10021877; scaffold164 TRF Tandem_Repeat 538812 538982 315 + . . scaffold164 TRF Tandem_Repeat 540302 540756 512 + . . scaffold164 TRF Tandem_Repeat 542121 542398 495 + . . scaffold164 TRF Tandem_Repeat 543082 543348 329 + . . scaffold164 TRF Tandem_Repeat 543703 544443 737 + . . scaffold164 TRF Tandem_Repeat 543703 544443 858 + . . scaffold164 GLEAN mRNA 549252 564006 0.99899 - . ID=CGI_10021878; scaffold164 TRF Tandem_Repeat 552437 552652 234 + . . scaffold164 TRF Tandem_Repeat 554824 554984 187 + . . scaffold164 TRF Tandem_Repeat 557938 558711 691 + . . scaffold164 TRF Tandem_Repeat 560609 560812 291 + . . scaffold164 TRF Tandem_Repeat 560904 560982 122 + . . scaffold164 TRF Tandem_Repeat 563317 563365 82 + . . scaffold164 GLEAN promoter 564007 565006 0.99899 - . ID=CGI_10021878; scaffold164 TRF Tandem_Repeat 568783 569038 395 + . . scaffold164 TRF Tandem_Repeat 569139 569403 314 + . . scaffold164 WUBlastX LINE_RTE-X 569580 569825 30 - . . scaffold164 WUBlastX LINE_RTE-X 569709 569807 42 - . . scaffold164 WUBlastX LINE_RTE-X 569806 569922 28 - . . scaffold164 WUBlastX LINE_RTE-X 570187 570234 37 - . . scaffold164 WUBlastX LINE_RTE-X 573065 573295 28 + . . scaffold164 TRF Tandem_Repeat 574868 574899 64 + . . scaffold164 TRF Tandem_Repeat 575955 576003 98 + . . scaffold164 TRF Tandem_Repeat 576420 576446 54 + . . scaffold164 TRF Tandem_Repeat 580967 581690 892 + . . scaffold164 TRF Tandem_Repeat 580967 581418 796 + . . scaffold164 TRF Tandem_Repeat 581419 581728 525 + . . scaffold164 GLEAN mRNA 582087 593087 0.583594 - . ID=CGI_10021879; scaffold164 TRF Tandem_Repeat 588508 588673 246 + . . scaffold164 TRF Tandem_Repeat 591153 591183 53 + . . scaffold164 GLEAN promoter 592166 593165 0.999351 + . ID=CGI_10021880; scaffold164 GLEAN promoter 593088 594087 0.583594 - . ID=CGI_10021879; scaffold164 GLEAN mRNA 593166 597502 0.999351 + . ID=CGI_10021880; scaffold164 TRF Tandem_Repeat 611321 611370 100 + . . scaffold164 GLEAN mRNA 617365 618483 0.777732 - . ID=CGI_10021881; scaffold164 GLEAN promoter 618484 619483 0.777732 - . ID=CGI_10021881; scaffold164 TRF Tandem_Repeat 623336 623437 177 + . . scaffold164 WUBlastX LTR_Ngaro 625697 626080 34 + . . scaffold164 WUBlastX LTR_Ngaro 625772 626080 155 + . . scaffold164 WUBlastX LTR_Ngaro 625772 626668 118 + . . scaffold164 TRF Tandem_Repeat 628326 628449 203 + . . scaffold164 TRF Tandem_Repeat 636263 636304 84 + . . scaffold164 TRF Tandem_Repeat 636526 636599 148 + . . scaffold164 TRF Tandem_Repeat 638219 638945 1011 + . . scaffold164 GLEAN promoter 640470 641469 0.999675 + . ID=CGI_10021882; scaffold164 GLEAN mRNA 641470 656494 0.999675 + . ID=CGI_10021882; scaffold164 GLEAN mRNA 662085 689616 0.811014 - . ID=CGI_10021883; scaffold164 TRF Tandem_Repeat 679684 680807 2113 + . . scaffold164 GLEAN promoter 689617 690616 0.811014 - . ID=CGI_10021883; scaffold164 TRF Tandem_Repeat 693295 693331 56 + . . scaffold164 WUBlastX LINE_RTE-X 704653 705063 103 - . . scaffold164 WUBlastX LINE_RTE-X 704785 705135 43 - . . scaffold164 WUBlastX LINE_RTE-X 705129 705473 112 - . . scaffold164 WUBlastX LINE_RTE-X 705273 705602 59 - . . scaffold164 WUBlastX LINE_RTE-X 705324 705506 62 - . . scaffold164 WUBlastX LINE_RTE-X 706125 706226 24 - . . scaffold164 TRF Tandem_Repeat 706729 706803 150 + . . scaffold164 TRF Tandem_Repeat 713843 713926 101 + . . scaffold164 TRF Tandem_Repeat 715454 715560 142 + . . scaffold164 WUBlastX DNA_TcMar-Marin 715764 715889 21 - . . scaffold1640 WUBlastX DNA_TcMar-Marin 2341 2934 81 - . . scaffold1641 GLEAN promoter 1 19 0.998179 + . ID=CGI_10012497; scaffold1641 GLEAN mRNA 20 1731 0.998179 + . ID=CGI_10012497; scaffold1641 GLEAN promoter 1460 2459 0.990345 + . ID=CGI_10012498; scaffold1641 GLEAN mRNA 2460 3730 0.990345 + . ID=CGI_10012498; scaffold1641 GLEAN promoter 4666 5665 0.965892 + . ID=CGI_10012499; scaffold1641 GLEAN mRNA 5666 14809 0.965892 + . ID=CGI_10012499; scaffold1641 TRF Tandem_Repeat 11904 11959 71 + . . scaffold1641 TRF Tandem_Repeat 11908 11962 65 + . . scaffold1641 TRF Tandem_Repeat 19421 19446 52 + . . scaffold1641 TRF Tandem_Repeat 27671 27796 94 + . . scaffold1641 TRF Tandem_Repeat 30476 30562 95 + . . scaffold1641 TRF Tandem_Repeat 30647 30779 169 + . . scaffold1641 TRF Tandem_Repeat 30856 31005 183 + . . scaffold1641 TRF Tandem_Repeat 42592 42641 59 + . . scaffold1641 TRF Tandem_Repeat 46872 47019 71 + . . scaffold1641 TRF Tandem_Repeat 46873 46954 128 + . . scaffold1641 GLEAN promoter 53062 54061 0.332971 + . ID=CGI_10012501; scaffold1641 GLEAN mRNA 54062 76631 0.332971 + . ID=CGI_10012501; scaffold1641 TRF Tandem_Repeat 65402 65552 69 + . . scaffold1641 TRF Tandem_Repeat 70434 70467 68 + . . scaffold1641 TRF Tandem_Repeat 72440 72497 109 + . . scaffold1641 TRF Tandem_Repeat 73949 75220 2142 + . . scaffold1641 TRF Tandem_Repeat 78204 78543 429 + . . scaffold1641 TRF Tandem_Repeat 80566 81332 1180 + . . scaffold1641 GLEAN mRNA 81721 106026 0.592059 - . ID=CGI_10012502; scaffold1641 TRF Tandem_Repeat 101436 101462 54 + . . scaffold1641 GLEAN promoter 106027 107026 0.592059 - . ID=CGI_10012502; scaffold1641 TRF Tandem_Repeat 116084 116150 134 + . . scaffold1641 GLEAN mRNA 146128 154081 0.592505 - . ID=CGI_10012503; scaffold1641 GLEAN promoter 154082 155081 0.592505 - . ID=CGI_10012503; scaffold1641 TRF Tandem_Repeat 156929 156983 110 + . . scaffold1641 GLEAN promoter 157676 158675 0.998323 + . ID=CGI_10012504; scaffold1641 GLEAN mRNA 158676 167945 0.998323 + . ID=CGI_10012504; scaffold1641 TRF Tandem_Repeat 167669 167778 202 + . . scaffold1641 GLEAN mRNA 170149 180343 1 - . ID=CGI_10012505; scaffold1641 TRF Tandem_Repeat 173194 173287 136 + . . scaffold1641 TRF Tandem_Repeat 173478 173597 134 + . . scaffold1641 TRF Tandem_Repeat 173724 173813 90 + . . scaffold1641 GLEAN promoter 180344 181343 1 - . ID=CGI_10012505; scaffold1641 GLEAN promoter 181893 182892 0.373126 + . ID=CGI_10012506; scaffold1641 TRF Tandem_Repeat 182140 182369 203 + . . scaffold1641 GLEAN mRNA 182893 184128 0.373126 + . ID=CGI_10012506; scaffold1641 GLEAN promoter 188607 189606 0.745185 + . ID=CGI_10012507; scaffold1641 GLEAN mRNA 189607 199282 0.745185 + . ID=CGI_10012507; scaffold1641 TRF Tandem_Repeat 195329 195775 355 + . . scaffold1641 TRF Tandem_Repeat 196494 196552 118 + . . scaffold1641 GLEAN mRNA 201328 201861 1 - . ID=CGI_10012508; scaffold1641 GLEAN promoter 201862 202861 1 - . ID=CGI_10012508; scaffold1641 TRF Tandem_Repeat 201997 202045 71 + . . scaffold1641 TRF Tandem_Repeat 203609 204300 642 + . . scaffold1641 TRF Tandem_Repeat 205824 206116 523 + . . scaffold1641 TRF Tandem_Repeat 205833 206125 415 + . . scaffold1641 TRF Tandem_Repeat 207411 207676 282 + . . scaffold1641 TRF Tandem_Repeat 207411 207672 317 + . . scaffold1641 TRF Tandem_Repeat 207413 207672 315 + . . scaffold1641 GLEAN promoter 209251 210250 0.731966 + . ID=CGI_10012509; scaffold1641 GLEAN mRNA 210251 211191 0.731966 + . ID=CGI_10012509; scaffold1641 GLEAN promoter 211327 212326 0.378732 + . ID=CGI_10012510; scaffold1641 GLEAN mRNA 212327 220564 0.378732 + . ID=CGI_10012510; scaffold1641 GLEAN promoter 220308 221307 0.19995 + . ID=CGI_10012511; scaffold1641 GLEAN mRNA 221308 225801 0.19995 + . ID=CGI_10012511; scaffold1641 GLEAN mRNA 226791 227456 0.694989 - . ID=CGI_10012512; scaffold1641 GLEAN promoter 227457 228456 0.694989 - . ID=CGI_10012512; scaffold1641 TRF Tandem_Repeat 227519 227582 74 + . . scaffold1641 TRF Tandem_Repeat 229290 229356 89 + . . scaffold1641 TRF Tandem_Repeat 231728 231774 94 + . . scaffold1641 TRF Tandem_Repeat 231962 231990 58 + . . scaffold1641 TRF Tandem_Repeat 231988 232022 70 + . . scaffold1641 TRF Tandem_Repeat 232516 232575 84 + . . scaffold1641 WUBlastX LTR_Gypsy-Cigr 232601 233170 83 - . . scaffold1641 WUBlastX LTR_Gypsy 232604 233017 97 - . . scaffold1641 WUBlastX LTR_Copia 233179 233349 30 - . . scaffold1641 WUBlastX LINE_Jockey 233236 233415 46 - . . scaffold1641 WUBlastX LTR_Gypsy-Cigr 233318 233956 172 - . . scaffold1641 WUBlastX LTR_Gypsy-Cigr 233486 233959 173 - . . scaffold1641 WUBlastX LTR_Gypsy 233579 234082 70 - . . scaffold1641 WUBlastX LTR_Gypsy 237422 237532 84 - . . scaffold1641 WUBlastX LTR_Gypsy-Cigr 237431 237637 76 - . . scaffold1641 TRF Tandem_Repeat 243567 243629 72 + . . scaffold1641 TRF Tandem_Repeat 245006 245108 54 + . . scaffold1641 TRF Tandem_Repeat 245007 245051 67 + . . scaffold1641 GLEAN promoter 265410 266409 0.676282 + . ID=CGI_10012513; scaffold1641 GLEAN mRNA 266410 275480 0.676282 + . ID=CGI_10012513; scaffold1641 GLEAN promoter 294095 295094 1 + . ID=CGI_10012514; scaffold1641 GLEAN mRNA 295095 295535 1 + . ID=CGI_10012514; scaffold1641 WUBlastX LINE_L1 296177 297640 151 + . . scaffold1641 WUBlastX LINE_L1-Tx1 296372 297613 841 + . . scaffold1641 WUBlastX LINE_L1-Tx1 297658 298626 152 + . . scaffold1641 GLEAN promoter 299419 300418 1 + . ID=CGI_10012515; scaffold1641 GLEAN mRNA 300419 300631 1 + . ID=CGI_10012515; scaffold1641 GLEAN promoter 304704 305703 0.557386 + . ID=CGI_10012516; scaffold1641 GLEAN mRNA 305704 313815 0.557386 + . ID=CGI_10012516; scaffold1641 GLEAN promoter 315119 316118 0.824689 + . ID=CGI_10012517; scaffold1641 GLEAN mRNA 316119 316400 0.824689 + . ID=CGI_10012517; scaffold1641 TRF Tandem_Repeat 319588 319690 179 + . . scaffold1641 TRF Tandem_Repeat 323892 324728 1101 + . . scaffold1642 GLEAN promoter 1 659 0.999769 + . ID=CGI_10001277; scaffold1642 GLEAN mRNA 593 8437 0.999676 - . ID=CGI_10001276; scaffold1642 GLEAN mRNA 660 9457 0.999769 + . ID=CGI_10001277; scaffold1642 GLEAN promoter 8438 9437 0.999676 - . ID=CGI_10001276; scaffold1643 TRF Tandem_Repeat 3438 4265 1128 + . . scaffold1643 GLEAN promoter 8456 9455 1 + . ID=CGI_10008359; scaffold1643 GLEAN mRNA 9456 10908 1 + . ID=CGI_10008359; scaffold1643 GLEAN mRNA 11205 15327 1 - . ID=CGI_10008360; scaffold1643 GLEAN promoter 15328 16327 1 - . ID=CGI_10008360; scaffold1643 GLEAN mRNA 15461 34224 1 - . ID=CGI_10008361; scaffold1643 TRF Tandem_Repeat 19005 19044 80 + . . scaffold1643 GLEAN promoter 34225 35224 1 - . ID=CGI_10008361; scaffold1643 WUBlastX DNA_MuDR 36424 36726 65 + . . scaffold1643 WUBlastX DNA_MuDR 36502 36879 109 + . . scaffold1643 WUBlastX DNA_MuDR 36547 36942 54 + . . scaffold1643 TRF Tandem_Repeat 59693 59729 74 + . . scaffold1643 TRF Tandem_Repeat 60917 60960 88 + . . scaffold1643 TRF Tandem_Repeat 81672 81706 70 + . . scaffold1643 TRF Tandem_Repeat 87300 87513 270 + . . scaffold1643 GLEAN promoter 87308 88307 0.999607 + . ID=CGI_10008363; scaffold1643 GLEAN mRNA 88308 104648 0.999607 + . ID=CGI_10008363; scaffold1643 GLEAN promoter 103668 104667 0.99993 + . ID=CGI_10008364; scaffold1643 GLEAN mRNA 104668 107388 0.99993 + . ID=CGI_10008364; scaffold1643 WUBlastX LTR_Pao 104920 105513 35 + . . scaffold1643 WUBlastX LTR_Pao 105040 106002 190 + . . scaffold1643 WUBlastX LTR_Pao 105568 106125 204 + . . scaffold1643 WUBlastX LTR_Pao 105628 105996 219 + . . scaffold1643 TRF Tandem_Repeat 109345 109380 56 + . . scaffold1643 TRF Tandem_Repeat 124710 124756 76 + . . scaffold1643 TRF Tandem_Repeat 130679 130723 54 + . . scaffold1643 GLEAN promoter 131742 132741 0.999645 + . ID=CGI_10008365; scaffold1643 GLEAN mRNA 132742 133116 0.999645 + . ID=CGI_10008365; scaffold1643 TRF Tandem_Repeat 133511 133554 79 + . . scaffold1643 WUBlastX LINE_L1-Tx1 136086 136511 66 - . . scaffold1643 GLEAN mRNA 139880 141664 1 - . ID=CGI_10008366; scaffold1643 GLEAN promoter 141665 142664 1 - . ID=CGI_10008366; scaffold1643 GLEAN mRNA 147523 157764 0.352688 - . ID=CGI_10008367; scaffold1643 GLEAN promoter 157765 158764 0.352688 - . ID=CGI_10008367; scaffold1643 TRF Tandem_Repeat 168295 168359 78 + . . scaffold1643 WUBlastX LTR_Ngaro 182639 182836 109 - . . scaffold1643 WUBlastX LTR_Ngaro 182832 182993 53 - . . scaffold1643 WUBlastX LTR_Ngaro 182844 183050 50 - . . scaffold1643 WUBlastX LTR_Pao 183837 185672 469 + . . scaffold1643 WUBlastX LTR_Pao 184152 185672 529 + . . scaffold1643 WUBlastX LTR_Pao 184683 185672 572 + . . scaffold1643 WUBlastX LTR_Ngaro 185699 186046 156 - . . scaffold1643 WUBlastX LTR_Ngaro 185699 186211 147 - . . scaffold1643 TRF Tandem_Repeat 187208 187357 124 + . . scaffold1643 GLEAN mRNA 191242 195294 0.99935 - . ID=CGI_10008368; scaffold1643 TRF Tandem_Repeat 191847 191913 57 + . . scaffold1643 TRF Tandem_Repeat 191850 191891 52 + . . scaffold1643 GLEAN promoter 195295 196294 0.99935 - . ID=CGI_10008368; scaffold1643 GLEAN mRNA 195682 200751 1 - . ID=CGI_10008369; scaffold1643 GLEAN promoter 200752 201751 1 - . ID=CGI_10008369; scaffold1644 GLEAN mRNA 4502 16425 0.999756 - . ID=CGI_10004211; scaffold1644 TRF Tandem_Repeat 5145 5384 133 + . . scaffold1644 TRF Tandem_Repeat 5281 5386 99 + . . scaffold1644 TRF Tandem_Repeat 5371 5404 59 + . . scaffold1644 TRF Tandem_Repeat 8162 9010 671 + . . scaffold1644 TRF Tandem_Repeat 10061 10100 53 + . . scaffold1644 GLEAN promoter 16426 17425 0.999756 - . ID=CGI_10004211; scaffold1644 TRF Tandem_Repeat 23635 23711 52 + . . scaffold1644 GLEAN mRNA 24284 24998 0.999996 - . ID=CGI_10004212; scaffold1644 GLEAN promoter 24999 25998 0.999996 - . ID=CGI_10004212; scaffold1644 GLEAN mRNA 25935 30751 0.994071 - . ID=CGI_10004213; scaffold1644 TRF Tandem_Repeat 26735 26764 60 + . . scaffold1644 GLEAN promoter 30752 31751 0.994071 - . ID=CGI_10004213; scaffold1644 TRF Tandem_Repeat 33631 34647 427 + . . scaffold1644 TRF Tandem_Repeat 34217 36762 874 + . . scaffold1644 TRF Tandem_Repeat 34217 37044 1381 + . . scaffold1644 TRF Tandem_Repeat 34503 34723 94 + . . scaffold1644 TRF Tandem_Repeat 34736 37044 683 + . . scaffold1644 TRF Tandem_Repeat 34736 37044 1210 + . . scaffold1644 TRF Tandem_Repeat 34933 36410 772 + . . scaffold1644 TRF Tandem_Repeat 37443 37619 130 + . . scaffold1644 TRF Tandem_Repeat 38228 38376 122 + . . scaffold1644 TRF Tandem_Repeat 42751 42893 241 + . . scaffold1644 TRF Tandem_Repeat 44817 44842 52 + . . scaffold1644 WUBlastX LINE_RTE-X 47447 47929 69 + . . scaffold1644 WUBlastX LINE_RTE-X 47447 47851 106 + . . scaffold1644 WUBlastX LINE_RTE-X 47943 47981 25 + . . scaffold1644 WUBlastX LINE_L2 50441 51238 114 - . . scaffold1644 WUBlastX LINE_CR1-L2 50753 51220 138 - . . scaffold1644 WUBlastX LINE_CR1-L2 50825 51208 187 - . . scaffold1644 TRF Tandem_Repeat 53998 54053 112 + . . scaffold1644 WUBlastX DNA_Academ 57975 59054 500 - . . scaffold1644 GLEAN mRNA 59083 88105 0.250771 - . ID=CGI_10004214; scaffold1644 WUBlastX DNA_Academ 59113 59634 164 - . . scaffold1644 WUBlastX DNA_Academ 59661 60764 404 - . . scaffold1644 WUBlastX DNA_Academ 60830 61432 135 - . . scaffold1644 WUBlastX DNA_Academ 62122 62364 57 - . . scaffold1644 WUBlastX DNA_Academ 62342 62539 67 - . . scaffold1644 WUBlastX DNA_Academ 62363 62599 50 - . . scaffold1644 TRF Tandem_Repeat 65804 65852 80 + . . scaffold1644 GLEAN promoter 88106 89105 0.250771 - . ID=CGI_10004214; scaffold1644 GLEAN promoter 92198 93197 0.995209 + . ID=CGI_10004215; scaffold1644 GLEAN mRNA 93198 94189 0.995209 + . ID=CGI_10004215; scaffold1645 GLEAN mRNA 342 3937 1 - . ID=CGI_10003351; scaffold1645 GLEAN promoter 3938 4937 1 - . ID=CGI_10003351; scaffold1645 GLEAN mRNA 7469 22440 0.712072 - . ID=CGI_10003352; scaffold1645 GLEAN promoter 22441 23440 0.712072 - . ID=CGI_10003352; scaffold1645 GLEAN promoter 28353 29352 1 + . ID=CGI_10003353; scaffold1645 GLEAN mRNA 29353 29813 1 + . ID=CGI_10003353; scaffold1645 GLEAN promoter 53970 54969 0.999661 + . ID=CGI_10003354; scaffold1645 GLEAN mRNA 54970 60371 0.999661 + . ID=CGI_10003354; scaffold1645 GLEAN promoter 62056 63055 1 + . ID=CGI_10003355; scaffold1645 GLEAN mRNA 63056 67594 1 + . ID=CGI_10003355; scaffold1645 GLEAN mRNA 68703 69440 1 - . ID=CGI_10003356; scaffold1645 GLEAN promoter 69441 70440 1 - . ID=CGI_10003356; scaffold1646 TRF Tandem_Repeat 3 422 723 + . . scaffold1646 TRF Tandem_Repeat 1071 1222 277 + . . scaffold1646 TRF Tandem_Repeat 1740 1989 491 + . . scaffold1646 TRF Tandem_Repeat 4072 4113 84 + . . scaffold1646 TRF Tandem_Repeat 7175 7210 72 + . . scaffold1646 TRF Tandem_Repeat 8935 8984 100 + . . scaffold1646 TRF Tandem_Repeat 9428 9453 52 + . . scaffold1646 TRF Tandem_Repeat 10347 10768 578 + . . scaffold1646 TRF Tandem_Repeat 10347 10810 469 + . . scaffold1646 TRF Tandem_Repeat 10404 10821 549 + . . scaffold1646 TRF Tandem_Repeat 13358 13427 77 + . . scaffold1646 TRF Tandem_Repeat 13473 13510 76 + . . scaffold1646 GLEAN mRNA 20884 21231 0.95872 - . ID=CGI_10007516; scaffold1646 GLEAN promoter 21232 22231 0.95872 - . ID=CGI_10007516; scaffold1646 TRF Tandem_Repeat 22417 22459 86 + . . scaffold1646 TRF Tandem_Repeat 30907 31034 240 + . . scaffold1646 GLEAN mRNA 36125 36319 0.717153 - . ID=CGI_10007517; scaffold1646 GLEAN promoter 36320 37319 0.717153 - . ID=CGI_10007517; scaffold1646 TRF Tandem_Repeat 39377 39410 61 + . . scaffold1646 GLEAN mRNA 47372 48235 0.741031 - . ID=CGI_10007518; scaffold1646 GLEAN promoter 48236 49235 0.741031 - . ID=CGI_10007518; scaffold1646 WUBlastX LINE_CR1 48724 49251 183 + . . scaffold1646 WUBlastX LINE_CR1 48900 49370 56 + . . scaffold1646 TRF Tandem_Repeat 52396 53167 374 + . . scaffold1646 GLEAN mRNA 54096 65289 0.32768 - . ID=CGI_10007519; scaffold1646 TRF Tandem_Repeat 61073 61144 101 + . . scaffold1646 GLEAN promoter 65290 66289 0.32768 - . ID=CGI_10007519; scaffold1646 GLEAN promoter 77300 78299 1 + . ID=CGI_10007520; scaffold1646 GLEAN mRNA 78300 78821 1 + . ID=CGI_10007520; scaffold1646 GLEAN mRNA 96144 109849 0.583131 - . ID=CGI_10007521; scaffold1646 GLEAN promoter 109850 110849 0.583131 - . ID=CGI_10007521; scaffold1646 TRF Tandem_Repeat 111464 111555 184 + . . scaffold1646 TRF Tandem_Repeat 114588 114674 63 + . . scaffold1646 TRF Tandem_Repeat 114601 114674 71 + . . scaffold1646 TRF Tandem_Repeat 122161 122254 179 + . . scaffold1646 GLEAN mRNA 153773 154162 0.909014 - . ID=CGI_10007522; scaffold1646 GLEAN promoter 154163 155162 0.909014 - . ID=CGI_10007522; scaffold1646 WUBlastX LTR_Gypsy-Cigr 154267 154761 117 - . . scaffold1646 WUBlastX LTR_ERV1 154614 155540 182 - . . scaffold1646 WUBlastX LTR_Gypsy 154782 156005 714 - . . scaffold1646 WUBlastX LTR_Gypsy 155772 156359 23 - . . scaffold1646 WUBlastX LTR_Gypsy-Cigr 155926 156135 112 - . . scaffold1646 WUBlastX LTR_Gypsy 156625 156771 30 - . . scaffold1646 TRF Tandem_Repeat 162886 162916 62 + . . scaffold1646 TRF Tandem_Repeat 170845 171126 399 + . . scaffold1646 TRF Tandem_Repeat 170845 171088 402 + . . scaffold1647 WUBlastX LTR_Gypsy-Cigr 4711 4995 62 - . . scaffold1647 WUBlastX LTR_Gypsy-Cigr 4783 4977 134 - . . scaffold1647 WUBlastX LTR_Gypsy 4931 5275 147 - . . scaffold1647 WUBlastX LTR_Gypsy 4988 5287 220 - . . scaffold1647 WUBlastX LTR_Gypsy 5274 6179 169 - . . scaffold1647 WUBlastX LTR_Gypsy 5841 6179 268 - . . scaffold1647 WUBlastX LTR_Gypsy 5910 6251 146 - . . scaffold1647 WUBlastX LTR_Gypsy 6419 6475 24 - . . scaffold1647 WUBlastX LTR_ERV1 6488 7603 163 - . . scaffold1647 WUBlastX LTR_Gypsy-Cigr 6656 7762 682 - . . scaffold1647 WUBlastX LTR_Gypsy 6779 7948 521 - . . scaffold1647 WUBlastX LTR_Gypsy 8061 8576 32 - . . scaffold1647 WUBlastX LTR_Gypsy-Cigr 8211 8657 40 - . . scaffold1647 WUBlastX LTR_Gypsy 8232 8483 61 - . . scaffold1647 WUBlastX LTR_Gypsy 8370 8516 47 - . . scaffold1647 WUBlastX LTR_Gypsy 9058 9408 42 - . . scaffold1647 TRF Tandem_Repeat 33276 33322 51 + . . scaffold1647 WUBlastX DNA_Sola 44153 45175 175 + . . scaffold1647 TRF Tandem_Repeat 47225 47258 59 + . . scaffold1647 WUBlastX DNA_TcMar-Tc1 53210 53890 50 + . . scaffold1647 WUBlastX DNA_TcMar-Tc1 53664 54134 90 + . . scaffold1647 WUBlastX DNA_TcMar-Tc1 53709 54008 93 + . . scaffold1647 WUBlastX DNA_TcMar-Fot1 58820 59128 139 + . . scaffold1647 WUBlastX LINE_RTE-BovB 62586 62846 105 + . . scaffold1647 WUBlastX LINE_RTE-BovB 62586 62783 112 + . . scaffold1647 WUBlastX DNA_TcMar-Fot1 67548 68507 640 + . . scaffold1647 TRF Tandem_Repeat 85481 86574 835 + . . scaffold1647 TRF Tandem_Repeat 85493 86607 643 + . . scaffold1647 TRF Tandem_Repeat 88636 88693 98 + . . scaffold1647 WUBlastX LTR_Gypsy 100515 100664 28 - . . scaffold1647 WUBlastX LTR_Gypsy 100590 100685 34 - . . scaffold1647 WUBlastX LTR_Gypsy 100700 101011 56 - . . scaffold1647 WUBlastX LTR_Gypsy 101004 101534 59 - . . scaffold1647 WUBlastX LTR_Gypsy 101004 101717 22 - . . scaffold1647 WUBlastX LTR_Gypsy 101830 102144 37 - . . scaffold1647 WUBlastX LTR_Gypsy 101890 102144 40 - . . scaffold1647 WUBlastX LTR_Gypsy 101957 102349 178 - . . scaffold1647 WUBlastX LTR_Gypsy 102447 102617 34 - . . scaffold1647 WUBlastX LTR_Gypsy 102519 102665 28 - . . scaffold1647 WUBlastX LTR_Gypsy 102669 103172 24 - . . scaffold1647 WUBlastX LTR_Gypsy 102735 102926 96 - . . scaffold1647 WUBlastX LTR_Gypsy 102937 103131 102 - . . scaffold1647 WUBlastX LTR_Gypsy 102937 103170 79 - . . scaffold1647 WUBlastX LTR_Gypsy 102967 103275 47 - . . scaffold1647 TRF Tandem_Repeat 103820 103866 94 + . . scaffold1647 GLEAN promoter 123519 124518 0.544851 + . ID=CGI_10008139; scaffold1647 GLEAN mRNA 124519 127941 0.544851 + . ID=CGI_10008139; scaffold1647 TRF Tandem_Repeat 134667 134698 64 + . . scaffold1647 WUBlastX DNA_Zator 143919 144011 21 + . . scaffold1647 TRF Tandem_Repeat 145467 145705 88 + . . scaffold1647 GLEAN promoter 155867 156866 0.999984 + . ID=CGI_10008140; scaffold1647 GLEAN mRNA 156867 157490 0.999984 + . ID=CGI_10008140; scaffold1647 GLEAN mRNA 157870 163808 0.957006 - . ID=CGI_10008141; scaffold1647 WUBlastX DNA_En-Spm 159261 159440 132 + . . scaffold1647 WUBlastX DNA_En-Spm 159439 159855 204 + . . scaffold1647 TRF Tandem_Repeat 159665 159695 53 + . . scaffold1647 TRF Tandem_Repeat 161021 161056 54 + . . scaffold1647 WUBlastX DNA_En-Spm 161332 161817 134 + . . scaffold1647 GLEAN promoter 163809 164808 0.957006 - . ID=CGI_10008141; scaffold1647 WUBlastX DNA_Maverick 166069 166365 163 - . . scaffold1647 WUBlastX DNA_Kolobok 166547 166867 65 + . . scaffold1647 TRF Tandem_Repeat 169690 169737 78 + . . scaffold1647 TRF Tandem_Repeat 169774 170853 1738 + . . scaffold1647 TRF Tandem_Repeat 172547 172653 153 + . . scaffold1647 GLEAN promoter 175745 176744 1 + . ID=CGI_10008143; scaffold1647 GLEAN promoter 176022 177021 0.999372 + . ID=CGI_10008144; scaffold1647 GLEAN mRNA 176745 176969 1 + . ID=CGI_10008143; scaffold1647 GLEAN promoter 176871 177870 0.991288 + . ID=CGI_10008145; scaffold1647 GLEAN mRNA 177022 177213 0.999372 + . ID=CGI_10008144; scaffold1647 GLEAN promoter 177863 178862 0.59015 + . ID=CGI_10008146; scaffold1647 GLEAN mRNA 177871 178466 0.991288 + . ID=CGI_10008145; scaffold1647 GLEAN mRNA 178863 179189 0.59015 + . ID=CGI_10008146; scaffold1647 GLEAN promoter 181198 182197 0.69447 + . ID=CGI_10008147; scaffold1647 GLEAN mRNA 182198 182422 0.69447 + . ID=CGI_10008147; scaffold1647 GLEAN promoter 186635 187634 0.525082 + . ID=CGI_10008148; scaffold1647 GLEAN mRNA 187635 201366 0.525082 + . ID=CGI_10008148; scaffold1647 WUBlastX LINE_Penelope 188357 188800 22 - . . scaffold1647 TRF Tandem_Repeat 190593 190713 172 + . . scaffold1647 TRF Tandem_Repeat 198300 198336 74 + . . scaffold1647 TRF Tandem_Repeat 199044 199100 105 + . . scaffold1647 TRF Tandem_Repeat 199143 199276 119 + . . scaffold1649 GLEAN promoter 1987 2986 0.801516 + . ID=CGI_10000799; scaffold1649 GLEAN mRNA 2987 4234 0.801516 + . ID=CGI_10000799; scaffold1649 GLEAN promoter 3264 4263 0.992284 + . ID=CGI_10000800; scaffold1649 GLEAN promoter 3928 4927 0.999572 + . ID=CGI_10000801; scaffold1649 GLEAN mRNA 4264 4905 0.992284 + . ID=CGI_10000800; scaffold1649 GLEAN mRNA 4928 6805 0.999572 + . ID=CGI_10000801; scaffold1649 GLEAN promoter 6627 7626 0.999981 + . ID=CGI_10000803; scaffold1649 GLEAN mRNA 7627 10119 0.999981 + . ID=CGI_10000803; scaffold165 TRF Tandem_Repeat 1363 1391 58 + . . scaffold165 GLEAN promoter 4514 5513 0.476218 + . ID=CGI_10015304; scaffold165 GLEAN mRNA 5514 23715 0.476218 + . ID=CGI_10015304; scaffold165 TRF Tandem_Repeat 7117 7186 113 + . . scaffold165 TRF Tandem_Repeat 11581 12450 1264 + . . scaffold165 TRF Tandem_Repeat 13407 13553 64 + . . scaffold165 TRF Tandem_Repeat 13478 13598 84 + . . scaffold165 TRF Tandem_Repeat 15731 16492 1060 + . . scaffold165 TRF Tandem_Repeat 16578 16620 68 + . . scaffold165 GLEAN promoter 23138 24137 0.943789 + . ID=CGI_10015305; scaffold165 GLEAN mRNA 24138 26030 0.943789 + . ID=CGI_10015305; scaffold165 GLEAN promoter 25399 26398 0.643177 + . ID=CGI_10015306; scaffold165 GLEAN mRNA 26399 28505 0.643177 + . ID=CGI_10015306; scaffold165 GLEAN promoter 27751 28750 0.998499 + . ID=CGI_10015307; scaffold165 GLEAN mRNA 28751 29712 0.998499 + . ID=CGI_10015307; scaffold165 GLEAN promoter 29099 30098 0.557846 + . ID=CGI_10015308; scaffold165 TRF Tandem_Repeat 29832 29964 124 + . . scaffold165 GLEAN mRNA 30099 30698 0.557846 + . ID=CGI_10015308; scaffold165 GLEAN promoter 32307 33306 1 + . ID=CGI_10015309; scaffold165 WUBlastX LTR_Copia 33292 33720 21 + . . scaffold165 GLEAN mRNA 33307 33933 1 + . ID=CGI_10015309; scaffold165 WUBlastX LINE_RTE-X 33370 33930 126 + . . scaffold165 WUBlastX LINE_RTE-X 33915 34010 67 + . . scaffold165 WUBlastX LINE_RTE-X 34077 34346 119 + . . scaffold165 GLEAN mRNA 35293 36948 0.531436 - . ID=CGI_10015310; scaffold165 WUBlastX LINE_RTE-X 36208 36555 32 - . . scaffold165 WUBlastX LINE_L2 36214 36663 31 - . . scaffold165 GLEAN promoter 36771 37770 0.53486 + . ID=CGI_10015311; scaffold165 GLEAN promoter 36949 37948 0.531436 - . ID=CGI_10015310; scaffold165 GLEAN mRNA 37771 47656 0.53486 + . ID=CGI_10015311; scaffold165 TRF Tandem_Repeat 46011 46364 487 + . . scaffold165 TRF Tandem_Repeat 46138 46205 55 + . . scaffold165 TRF Tandem_Repeat 46608 47869 1051 + . . scaffold165 TRF Tandem_Repeat 46821 46944 58 + . . scaffold165 TRF Tandem_Repeat 47572 47642 66 + . . scaffold165 TRF Tandem_Repeat 48264 48441 80 + . . scaffold165 TRF Tandem_Repeat 49098 49131 68 + . . scaffold165 TRF Tandem_Repeat 49296 49350 103 + . . scaffold165 TRF Tandem_Repeat 49546 49577 55 + . . scaffold165 TRF Tandem_Repeat 49691 49748 116 + . . scaffold165 TRF Tandem_Repeat 50803 50979 80 + . . scaffold165 GLEAN mRNA 52313 52600 1 - . ID=CGI_10015312; scaffold165 GLEAN promoter 52601 53600 1 - . ID=CGI_10015312; scaffold165 GLEAN mRNA 52666 53286 0.999315 - . ID=CGI_10015313; scaffold165 GLEAN promoter 53287 54286 0.999315 - . ID=CGI_10015313; scaffold165 TRF Tandem_Repeat 59350 60056 795 + . . scaffold165 TRF Tandem_Repeat 59350 60048 788 + . . scaffold165 TRF Tandem_Repeat 59353 60048 597 + . . scaffold165 TRF Tandem_Repeat 61409 61450 84 + . . scaffold165 GLEAN mRNA 62290 62700 0.979657 - . ID=CGI_10015314; scaffold165 GLEAN promoter 62701 63700 0.979657 - . ID=CGI_10015314; scaffold165 TRF Tandem_Repeat 67772 67827 67 + . . scaffold165 TRF Tandem_Repeat 69646 69674 58 + . . scaffold165 GLEAN promoter 99697 100696 0.998921 + . ID=CGI_10015315; scaffold165 GLEAN mRNA 100697 128503 0.998921 + . ID=CGI_10015315; scaffold165 WUBlastX LTR_Gypsy 110645 110923 29 + . . scaffold165 WUBlastX LTR_Gypsy 110693 110923 46 + . . scaffold165 WUBlastX LTR_Gypsy 110693 111025 44 + . . scaffold165 WUBlastX LTR_Gypsy 111127 111189 22 + . . scaffold165 WUBlastX LTR_Gypsy 111139 111867 524 + . . scaffold165 WUBlastX LTR_Gypsy 111145 112086 433 + . . scaffold165 WUBlastX LTR_Gypsy 111846 112427 359 + . . scaffold165 WUBlastX LTR_Gypsy 112422 112535 26 + . . scaffold165 WUBlastX LTR_Gypsy 112520 113827 971 + . . scaffold165 WUBlastX LTR_Gypsy 114298 114342 20 + . . scaffold165 TRF Tandem_Repeat 119247 119553 614 + . . scaffold165 GLEAN mRNA 122672 132436 0.647898 - . ID=CGI_10015316; scaffold165 GLEAN promoter 132437 133436 0.647898 - . ID=CGI_10015316; scaffold165 GLEAN mRNA 134673 135629 0.691018 - . ID=CGI_10015317; scaffold165 GLEAN promoter 135630 136629 0.691018 - . ID=CGI_10015317; scaffold165 TRF Tandem_Repeat 136114 136344 356 + . . scaffold165 TRF Tandem_Repeat 137859 138509 1086 + . . scaffold165 GLEAN promoter 138265 139264 0.352689 + . ID=CGI_10015318; scaffold165 GLEAN mRNA 139265 143556 0.352689 + . ID=CGI_10015318; scaffold165 TRF Tandem_Repeat 141731 142185 645 + . . scaffold165 GLEAN mRNA 145147 145308 0.615168 - . ID=CGI_10015319; scaffold165 GLEAN promoter 145309 146308 0.615168 - . ID=CGI_10015319; scaffold165 GLEAN mRNA 145470 150801 0.5 - . ID=CGI_10015320; scaffold165 TRF Tandem_Repeat 147562 148859 1650 + . . scaffold165 GLEAN promoter 150802 151801 0.5 - . ID=CGI_10015320; scaffold165 GLEAN mRNA 170204 175301 0.999999 - . ID=CGI_10015321; scaffold165 GLEAN promoter 175302 176301 0.999999 - . ID=CGI_10015321; scaffold165 TRF Tandem_Repeat 175514 175556 86 + . . scaffold165 TRF Tandem_Repeat 176061 176116 85 + . . scaffold165 TRF Tandem_Repeat 176744 176908 161 + . . scaffold165 TRF Tandem_Repeat 176765 176888 121 + . . scaffold165 TRF Tandem_Repeat 177553 178008 251 + . . scaffold165 TRF Tandem_Repeat 177627 177960 346 + . . scaffold165 GLEAN mRNA 180012 186401 1 - . ID=CGI_10015322; scaffold165 GLEAN promoter 186402 187401 1 - . ID=CGI_10015322; scaffold165 GLEAN promoter 194130 195129 1 + . ID=CGI_10015323; scaffold165 GLEAN mRNA 195130 200984 1 + . ID=CGI_10015323; scaffold165 WUBlastX LTR_Pao 197614 198042 153 - . . scaffold165 WUBlastX LTR_Pao 197644 198333 30 - . . scaffold165 WUBlastX LTR_Pao 197644 198198 126 - . . scaffold165 WUBlastX LTR_Pao 198406 198786 27 - . . scaffold165 WUBlastX LTR_Pao 198520 198783 47 - . . scaffold165 WUBlastX LTR_Pao 198867 198983 28 - . . scaffold165 WUBlastX LTR_Pao 199350 199451 36 - . . scaffold165 GLEAN promoter 202059 203058 0.999676 + . ID=CGI_10015324; scaffold165 GLEAN mRNA 203059 211300 0.999676 + . ID=CGI_10015324; scaffold165 TRF Tandem_Repeat 210277 210535 164 + . . scaffold165 TRF Tandem_Repeat 210352 210556 267 + . . scaffold165 TRF Tandem_Repeat 212429 213829 623 + . . scaffold165 TRF Tandem_Repeat 212431 213829 588 + . . scaffold165 GLEAN mRNA 216658 219824 0.999999 - . ID=CGI_10015325; scaffold165 GLEAN promoter 219825 220824 0.999999 - . ID=CGI_10015325; scaffold165 TRF Tandem_Repeat 219975 220027 106 + . . scaffold165 GLEAN promoter 222444 223443 1 + . ID=CGI_10015326; scaffold165 GLEAN mRNA 223444 232812 1 + . ID=CGI_10015326; scaffold165 TRF Tandem_Repeat 227589 228308 1359 + . . scaffold165 GLEAN mRNA 237916 246865 0.988019 - . ID=CGI_10015327; scaffold165 TRF Tandem_Repeat 241435 241858 699 + . . scaffold165 TRF Tandem_Repeat 246226 246318 186 + . . scaffold165 GLEAN promoter 246866 247865 0.988019 - . ID=CGI_10015327; scaffold165 GLEAN mRNA 247164 249781 1 - . ID=CGI_10015328; scaffold165 GLEAN promoter 249782 250781 1 - . ID=CGI_10015328; scaffold165 WUBlastX LINE_L1-Tx1 253814 256750 1340 - . . scaffold165 TRF Tandem_Repeat 260032 260115 60 + . . scaffold165 TRF Tandem_Repeat 260042 260104 62 + . . scaffold165 GLEAN promoter 264972 265971 0.459638 + . ID=CGI_10015329; scaffold165 TRF Tandem_Repeat 265928 265966 60 + . . scaffold165 GLEAN mRNA 265972 268806 0.459638 + . ID=CGI_10015329; scaffold165 TRF Tandem_Repeat 270913 270978 89 + . . scaffold165 TRF Tandem_Repeat 277244 277327 61 + . . scaffold165 TRF Tandem_Repeat 277297 277327 62 + . . scaffold165 TRF Tandem_Repeat 278846 279294 306 + . . scaffold165 TRF Tandem_Repeat 278946 279470 621 + . . scaffold165 TRF Tandem_Repeat 285430 285468 51 + . . scaffold165 GLEAN mRNA 293161 307887 0.249814 - . ID=CGI_10015330; scaffold165 WUBlastX LINE_L1 305122 305772 42 - . . scaffold165 WUBlastX LINE_L1-Tx1 305281 306822 539 - . . scaffold165 WUBlastX DNA_En-Spm 306877 307470 36 - . . scaffold165 WUBlastX DNA_En-Spm 306997 307641 199 - . . scaffold165 GLEAN promoter 307888 308887 0.249814 - . ID=CGI_10015330; scaffold165 WUBlastX LTR_Pao 357924 358244 141 - . . scaffold165 WUBlastX LTR_Pao 357930 358913 109 - . . scaffold165 WUBlastX LTR_Pao 357945 358376 110 - . . scaffold165 WUBlastX LINE_L1 360392 361057 80 + . . scaffold165 WUBlastX LINE_L1 360659 361192 64 + . . scaffold165 TRF Tandem_Repeat 361672 361797 76 + . . scaffold165 WUBlastX LINE_L1-Tx1 362383 364029 918 + . . scaffold165 WUBlastX LINE_L1-Tx1 363992 366160 958 + . . scaffold165 TRF Tandem_Repeat 366197 366289 118 + . . scaffold165 WUBlastX LINE_L1-Tx1 366853 367014 39 - . . scaffold165 WUBlastX LINE_L1-Tx1 366907 367014 46 - . . scaffold165 WUBlastX LINE_L1-Tx1 367034 367165 28 - . . scaffold165 TRF Tandem_Repeat 368347 368590 398 + . . scaffold165 GLEAN mRNA 370842 389362 0.999778 - . ID=CGI_10015331; scaffold165 TRF Tandem_Repeat 374986 376244 1538 + . . scaffold165 TRF Tandem_Repeat 375292 376244 1190 + . . scaffold165 WUBlastX LINE_L1-Tx1 380877 380990 36 - . . scaffold165 WUBlastX LINE_L1-Tx1 380959 381249 54 - . . scaffold165 TRF Tandem_Repeat 382159 383555 1873 + . . scaffold165 TRF Tandem_Repeat 382159 383562 1874 + . . scaffold165 TRF Tandem_Repeat 384747 384794 78 + . . scaffold165 TRF Tandem_Repeat 385147 385185 78 + . . scaffold165 TRF Tandem_Repeat 385549 385661 92 + . . scaffold165 TRF Tandem_Repeat 385814 386201 571 + . . scaffold165 TRF Tandem_Repeat 386206 386555 522 + . . scaffold165 GLEAN promoter 388788 389787 0.499576 + . ID=CGI_10015332; scaffold165 GLEAN promoter 389363 390362 0.999778 - . ID=CGI_10015331; scaffold165 GLEAN mRNA 389788 399015 0.499576 + . ID=CGI_10015332; scaffold165 GLEAN promoter 400693 401692 0.999998 + . ID=CGI_10015333; scaffold165 WUBlastX LTR_Pao 400982 401167 25 - . . scaffold165 WUBlastX LTR_Pao 401012 401170 115 - . . scaffold165 WUBlastX LTR_Pao 401170 401688 516 - . . scaffold165 GLEAN mRNA 401693 410950 0.999998 + . ID=CGI_10015333; scaffold165 TRF Tandem_Repeat 402226 402492 171 + . . scaffold165 TRF Tandem_Repeat 405872 406258 701 + . . scaffold165 GLEAN mRNA 408549 422699 0.999997 - . ID=CGI_10015334; scaffold165 TRF Tandem_Repeat 416884 417128 185 + . . scaffold165 TRF Tandem_Repeat 416884 417079 218 + . . scaffold165 TRF Tandem_Repeat 417557 417825 254 + . . scaffold165 TRF Tandem_Repeat 417561 417825 130 + . . scaffold165 GLEAN promoter 422700 423699 0.999997 - . ID=CGI_10015334; scaffold165 TRF Tandem_Repeat 423111 423150 80 + . . scaffold1650 WUBlastX LINE_RTE-X 634 738 23 - . . scaffold1650 WUBlastX LINE_RTE-X 664 738 25 - . . scaffold1650 WUBlastX LINE_RTE-X 731 904 55 - . . scaffold1650 GLEAN promoter 2040 3039 1 + . ID=CGI_10017767; scaffold1650 GLEAN mRNA 3040 6158 1 + . ID=CGI_10017767; scaffold1650 TRF Tandem_Repeat 9487 9552 57 + . . scaffold1650 GLEAN mRNA 11438 15410 0.647114 - . ID=CGI_10017768; scaffold1650 WUBlastX LTR_DIRS 13029 13421 112 - . . scaffold1650 WUBlastX LTR_DIRS 13432 13650 56 - . . scaffold1650 GLEAN promoter 15411 16410 0.647114 - . ID=CGI_10017768; scaffold1650 WUBlastX LTR_Pao 18348 24005 3475 - . . scaffold1650 WUBlastX LTR_Pao 21615 24554 921 - . . scaffold1650 GLEAN mRNA 31012 31380 0.991548 - . ID=CGI_10017769; scaffold1650 WUBlastX DNA_MuDR 31304 31528 112 - . . scaffold1650 GLEAN promoter 31381 32380 0.991548 - . ID=CGI_10017769; scaffold1650 WUBlastX LINE_L1-Tx1 32462 33733 803 + . . scaffold1650 WUBlastX LINE_L1-Tx1 33696 34595 333 + . . scaffold1650 WUBlastX LINE_L1 34603 34749 39 + . . scaffold1650 WUBlastX LINE_L1 34681 34776 23 + . . scaffold1650 TRF Tandem_Repeat 34812 34848 65 + . . scaffold1650 TRF Tandem_Repeat 43392 43417 52 + . . scaffold1650 TRF Tandem_Repeat 48417 48930 697 + . . scaffold1650 GLEAN promoter 52770 53769 0.982202 + . ID=CGI_10017770; scaffold1650 GLEAN mRNA 53770 77975 0.982202 + . ID=CGI_10017770; scaffold1650 GLEAN mRNA 71588 76134 0.992708 - . ID=CGI_10017771; scaffold1650 GLEAN promoter 76135 77134 0.992708 - . ID=CGI_10017771; scaffold1650 TRF Tandem_Repeat 79392 79429 76 + . . scaffold1650 TRF Tandem_Repeat 80396 80469 148 + . . scaffold1650 TRF Tandem_Repeat 80516 80644 172 + . . scaffold1650 TRF Tandem_Repeat 80516 80643 130 + . . scaffold1650 TRF Tandem_Repeat 96407 96464 116 + . . scaffold1650 GLEAN mRNA 102282 130606 0.781405 - . ID=CGI_10017772; scaffold1650 WUBlastX LINE_L2 113636 114451 280 - . . scaffold1650 WUBlastX LINE_CR1 113960 114583 41 - . . scaffold1650 GLEAN promoter 130269 131268 0.997617 + . ID=CGI_10017773; scaffold1650 GLEAN promoter 130607 131606 0.781405 - . ID=CGI_10017772; scaffold1650 GLEAN mRNA 131269 168998 0.997617 + . ID=CGI_10017773; scaffold1650 TRF Tandem_Repeat 138190 139276 1514 + . . scaffold1650 TRF Tandem_Repeat 149563 149604 84 + . . scaffold1650 GLEAN mRNA 150281 151931 1 - . ID=CGI_10017774; scaffold1650 GLEAN promoter 151932 152931 1 - . ID=CGI_10017774; scaffold1650 GLEAN mRNA 171974 251292 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 174837 174885 98 + . . scaffold1650 TRF Tandem_Repeat 178423 178849 600 + . . scaffold1650 TRF Tandem_Repeat 182766 183316 737 + . . scaffold1650 TRF Tandem_Repeat 182783 183316 795 + . . scaffold1650 TRF Tandem_Repeat 188118 188219 152 + . . scaffold1650 TRF Tandem_Repeat 189676 190325 724 + . . scaffold1650 TRF Tandem_Repeat 190979 191211 131 + . . scaffold1650 TRF Tandem_Repeat 192885 193954 1782 + . . scaffold1650 TRF Tandem_Repeat 196277 196377 62 + . . scaffold1650 TRF Tandem_Repeat 201139 201181 86 + . . scaffold1650 TRF Tandem_Repeat 203261 203362 50 + . . scaffold1650 TRF Tandem_Repeat 203279 203345 62 + . . scaffold1650 TRF Tandem_Repeat 203497 203581 161 + . . scaffold1650 TRF Tandem_Repeat 206109 206402 253 + . . scaffold1650 TRF Tandem_Repeat 208653 208703 66 + . . scaffold1650 TRF Tandem_Repeat 208656 208703 51 + . . scaffold1650 TRF Tandem_Repeat 208660 208702 68 + . . scaffold1650 TRF Tandem_Repeat 211119 211322 320 + . . scaffold1650 TRF Tandem_Repeat 213264 213337 130 + . . scaffold1650 TRF Tandem_Repeat 214637 215148 764 + . . scaffold1650 TRF Tandem_Repeat 214709 215148 767 + . . scaffold1650 TRF Tandem_Repeat 216159 216298 253 + . . scaffold1650 WUBlastX LTR_Copia 218670 219113 30 - . . scaffold1650 TRF Tandem_Repeat 225565 225681 126 + . . scaffold1650 TRF Tandem_Repeat 230108 230179 108 + . . scaffold1650 TRF Tandem_Repeat 231522 231554 57 + . . scaffold1650 TRF Tandem_Repeat 231522 231584 63 + . . scaffold1650 TRF Tandem_Repeat 231646 231753 78 + . . scaffold1650 TRF Tandem_Repeat 231660 231753 84 + . . scaffold1650 TRF Tandem_Repeat 231809 231877 106 + . . scaffold1650 TRF Tandem_Repeat 232466 233156 1120 + . . scaffold1650 TRF Tandem_Repeat 234547 234620 148 + . . scaffold1650 TRF Tandem_Repeat 236159 236254 183 + . . scaffold1650 TRF Tandem_Repeat 237662 239037 2294 + . . scaffold1650 TRF Tandem_Repeat 239144 239461 618 + . . scaffold1650 TRF Tandem_Repeat 243616 243743 211 + . . scaffold1650 TRF Tandem_Repeat 244220 244307 108 + . . scaffold1650 TRF Tandem_Repeat 249698 250100 422 + . . scaffold1650 TRF Tandem_Repeat 250342 250688 505 + . . scaffold1650 TRF Tandem_Repeat 250727 250810 51 + . . scaffold1650 GLEAN promoter 251293 252292 0.504113 - . ID=CGI_10017775; scaffold1650 TRF Tandem_Repeat 252409 252435 54 + . . scaffold1650 TRF Tandem_Repeat 252920 252959 80 + . . scaffold1650 GLEAN mRNA 257574 281084 0.789325 - . ID=CGI_10017776; scaffold1650 TRF Tandem_Repeat 266364 266544 208 + . . scaffold1650 WUBlastX LINE_L1 270781 271131 22 - . . scaffold1650 TRF Tandem_Repeat 272940 273038 162 + . . scaffold1650 TRF Tandem_Repeat 273169 273206 76 + . . scaffold1650 TRF Tandem_Repeat 276887 277045 264 + . . scaffold1650 GLEAN promoter 281085 282084 0.789325 - . ID=CGI_10017776; scaffold1650 WUBlastX LTR_Gypsy 285091 285726 175 + . . scaffold1650 WUBlastX LTR_Gypsy 285130 285651 189 + . . scaffold1650 TRF Tandem_Repeat 288613 288654 84 + . . scaffold1650 TRF Tandem_Repeat 288654 288683 60 + . . scaffold1650 TRF Tandem_Repeat 291131 291202 144 + . . scaffold1650 TRF Tandem_Repeat 302492 302647 93 + . . scaffold1650 TRF Tandem_Repeat 302492 302647 79 + . . scaffold1650 TRF Tandem_Repeat 308392 308446 101 + . . scaffold1650 TRF Tandem_Repeat 315954 316217 219 + . . scaffold1650 TRF Tandem_Repeat 315960 316045 79 + . . scaffold1650 TRF Tandem_Repeat 316109 316238 84 + . . scaffold1650 WUBlastX DNA_TcMar-Tc1 317985 318512 67 + . . scaffold1650 WUBlastX DNA_TcMar-Tc1 317994 318416 92 + . . scaffold1650 WUBlastX DNA_TcMar-Tc1 318491 318802 89 + . . scaffold1650 WUBlastX DNA_TcMar-Tc1 318563 318802 101 + . . scaffold1650 TRF Tandem_Repeat 319260 319333 148 + . . scaffold1650 GLEAN mRNA 332036 335918 0.361807 - . ID=CGI_10017777; scaffold1650 GLEAN promoter 335919 336918 0.361807 - . ID=CGI_10017777; scaffold1650 TRF Tandem_Repeat 338672 338757 91 + . . scaffold1650 GLEAN promoter 345036 346035 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 345323 345373 102 + . . scaffold1650 GLEAN mRNA 346036 364125 0.999041 + . ID=CGI_10017778; scaffold1650 TRF Tandem_Repeat 350457 351332 372 + . . scaffold1650 TRF Tandem_Repeat 350676 351388 733 + . . scaffold1650 TRF Tandem_Repeat 350676 351388 772 + . . scaffold1650 TRF Tandem_Repeat 350868 351388 634 + . . scaffold1650 TRF Tandem_Repeat 351541 351689 94 + . . scaffold1650 TRF Tandem_Repeat 353879 354016 145 + . . scaffold1650 TRF Tandem_Repeat 353879 353982 136 + . . scaffold1650 TRF Tandem_Repeat 353879 353982 136 + . . scaffold1650 TRF Tandem_Repeat 353880 354012 144 + . . scaffold1650 TRF Tandem_Repeat 353882 354012 108 + . . scaffold1650 TRF Tandem_Repeat 353928 354016 73 + . . scaffold1650 TRF Tandem_Repeat 364116 364175 75 + . . scaffold1650 TRF Tandem_Repeat 374834 374992 318 + . . scaffold1650 GLEAN promoter 376193 377192 0.813899 + . ID=CGI_10017779; scaffold1650 GLEAN mRNA 377193 382435 0.813899 + . ID=CGI_10017779; scaffold1650 TRF Tandem_Repeat 379164 379226 110 + . . scaffold1650 TRF Tandem_Repeat 379775 379863 108 + . . scaffold1650 GLEAN mRNA 383505 390477 0.87729 - . ID=CGI_10017780; scaffold1650 TRF Tandem_Repeat 384600 384633 59 + . . scaffold1650 GLEAN promoter 390478 391477 0.87729 - . ID=CGI_10017780; scaffold1650 TRF Tandem_Repeat 399753 400369 1038 + . . scaffold1650 GLEAN mRNA 402171 406396 0.999675 - . ID=CGI_10017781; scaffold1650 GLEAN promoter 406397 407396 0.999675 - . ID=CGI_10017781; scaffold1650 TRF Tandem_Repeat 407943 408725 1005 + . . scaffold1650 TRF Tandem_Repeat 409445 409775 506 + . . scaffold1650 TRF Tandem_Repeat 416801 416844 70 + . . scaffold1650 TRF Tandem_Repeat 417530 417569 53 + . . scaffold1650 TRF Tandem_Repeat 417570 417628 109 + . . scaffold1650 WUBlastX LINE_L1-Tx1 422430 422702 64 + . . scaffold1650 TRF Tandem_Repeat 429757 430708 1618 + . . scaffold1650 TRF Tandem_Repeat 451933 452501 461 + . . scaffold1650 TRF Tandem_Repeat 451940 452500 457 + . . scaffold1650 TRF Tandem_Repeat 452216 452500 302 + . . scaffold1650 GLEAN promoter 453767 454766 0.937811 + . ID=CGI_10017782; scaffold1650 GLEAN mRNA 454767 463877 0.937811 + . ID=CGI_10017782; scaffold1650 WUBlastX DNA_TcMar-Marin 460637 461485 30 + . . scaffold1650 WUBlastX DNA_TcMar-Marin 460811 461488 140 + . . scaffold1650 GLEAN promoter 464670 465669 1 + . ID=CGI_10017783; scaffold1650 GLEAN mRNA 465670 472059 1 + . ID=CGI_10017783; scaffold1650 TRF Tandem_Repeat 477215 477528 628 + . . scaffold1650 GLEAN promoter 490335 491334 0.950029 + . ID=CGI_10017784; scaffold1650 GLEAN mRNA 491335 500733 0.950029 + . ID=CGI_10017784; scaffold1650 GLEAN mRNA 508610 514421 0.969144 - . ID=CGI_10017785; scaffold1650 GLEAN promoter 514422 515421 0.969144 - . ID=CGI_10017785; scaffold1650 TRF Tandem_Repeat 514735 514771 74 + . . scaffold1650 TRF Tandem_Repeat 517249 517301 79 + . . scaffold1650 TRF Tandem_Repeat 517931 518004 58 + . . scaffold1650 TRF Tandem_Repeat 517931 518004 58 + . . scaffold1651 GLEAN mRNA 718 18299 0.886062 - . ID=CGI_10007883; scaffold1651 TRF Tandem_Repeat 2748 2797 84 + . . scaffold1651 TRF Tandem_Repeat 2940 2983 88 + . . scaffold1651 TRF Tandem_Repeat 4076 5133 1153 + . . scaffold1651 GLEAN promoter 18300 19299 0.886062 - . ID=CGI_10007883; scaffold1651 GLEAN promoter 24492 25491 0.998071 + . ID=CGI_10007884; scaffold1651 GLEAN promoter 25002 26001 0.991361 + . ID=CGI_10007885; scaffold1651 GLEAN mRNA 25492 25971 0.998071 + . ID=CGI_10007884; scaffold1651 GLEAN mRNA 26002 27154 0.991361 + . ID=CGI_10007885; scaffold1651 GLEAN promoter 27299 28298 0.991365 + . ID=CGI_10007886; scaffold1651 GLEAN mRNA 28299 32603 0.991365 + . ID=CGI_10007886; scaffold1651 TRF Tandem_Repeat 43680 43801 145 + . . scaffold1651 TRF Tandem_Repeat 43695 43794 173 + . . scaffold1651 TRF Tandem_Repeat 44983 45042 120 + . . scaffold1651 TRF Tandem_Repeat 46580 46702 185 + . . scaffold1651 TRF Tandem_Repeat 46590 46718 103 + . . scaffold1651 WUBlastX LINE_CR1-L2 46751 46915 61 - . . scaffold1651 GLEAN promoter 51803 52802 1 + . ID=CGI_10007887; scaffold1651 GLEAN mRNA 52803 57976 1 + . ID=CGI_10007887; scaffold1651 TRF Tandem_Repeat 53536 53635 67 + . . scaffold1651 TRF Tandem_Repeat 53554 53636 66 + . . scaffold1651 TRF Tandem_Repeat 53557 53607 66 + . . scaffold1651 GLEAN promoter 63291 64290 0.999027 + . ID=CGI_10007888; scaffold1651 TRF Tandem_Repeat 63699 63804 167 + . . scaffold1651 GLEAN mRNA 64291 72997 0.999027 + . ID=CGI_10007888; scaffold1651 WUBlastX DNA_TcMar-Tc1 65256 65534 79 - . . scaffold1651 WUBlastX DNA_TcMar-Tc1 66802 66867 22 - . . scaffold1651 WUBlastX DNA_TcMar-Tc1 67261 67590 91 - . . scaffold1651 GLEAN promoter 73879 74878 1 + . ID=CGI_10007890; scaffold1651 GLEAN mRNA 73958 74515 0.997685 - . ID=CGI_10007889; scaffold1651 WUBlastX DNA_Kolobok-IS4 73961 74479 94 - . . scaffold1651 GLEAN promoter 74516 75515 0.997685 - . ID=CGI_10007889; scaffold1651 GLEAN mRNA 74879 82055 1 + . ID=CGI_10007890; scaffold1651 TRF Tandem_Repeat 78770 79376 1061 + . . scaffold1651 GLEAN mRNA 87110 90200 0.99961 - . ID=CGI_10007891; scaffold1651 TRF Tandem_Repeat 88813 89289 526 + . . scaffold1651 GLEAN promoter 90201 91200 0.99961 - . ID=CGI_10007891; scaffold1651 GLEAN mRNA 96893 110823 1 - . ID=CGI_10007892; scaffold1651 TRF Tandem_Repeat 103502 103594 73 + . . scaffold1651 GLEAN promoter 105699 106698 0.999351 + . ID=CGI_10007893; scaffold1651 GLEAN mRNA 106699 111210 0.999351 + . ID=CGI_10007893; scaffold1651 GLEAN promoter 110824 111823 1 - . ID=CGI_10007892; scaffold1651 GLEAN promoter 114241 115240 0.911246 + . ID=CGI_10007894; scaffold1651 TRF Tandem_Repeat 114599 114687 60 + . . scaffold1651 GLEAN mRNA 115241 119377 0.911246 + . ID=CGI_10007894; scaffold1651 WUBlastX LINE_CR1 125502 125903 73 - . . scaffold1651 WUBlastX LINE_RTE-X 125544 125858 95 - . . scaffold1651 WUBlastX LTR_Ngaro 126103 126351 132 - . . scaffold1651 WUBlastX LTR_Ngaro 126365 126700 137 - . . scaffold1651 WUBlastX LTR_Ngaro 126682 127032 138 - . . scaffold1651 WUBlastX LTR_Ngaro 127006 127254 131 - . . scaffold1651 WUBlastX LTR_Ngaro 127244 127615 199 - . . scaffold1651 WUBlastX LTR_Ngaro 127593 128036 227 - . . scaffold1651 WUBlastX LTR_Ngaro 128044 128511 335 - . . scaffold1651 WUBlastX LTR_Ngaro 128056 128715 97 - . . scaffold1651 WUBlastX LTR_Ngaro 128690 128986 32 - . . scaffold1651 WUBlastX LTR_Ngaro 128876 129043 92 - . . scaffold1651 TRF Tandem_Repeat 129052 129402 452 + . . scaffold1651 TRF Tandem_Repeat 129311 129425 113 + . . scaffold1651 TRF Tandem_Repeat 140150 141036 1282 + . . scaffold1651 WUBlastX LINE_L1 141628 141855 53 + . . scaffold1651 WUBlastX LINE_L1 141667 141888 56 + . . scaffold1651 WUBlastX LINE_L1-Tx1 141872 142276 176 + . . scaffold1651 WUBlastX LINE_L1-Tx1 141962 142345 76 + . . scaffold1651 WUBlastX LINE_L1-Tx1 142872 143267 40 + . . scaffold1651 WUBlastX LINE_L1-Tx1 142902 143135 41 + . . scaffold1651 TRF Tandem_Repeat 154112 154156 54 + . . scaffold1651 WUBlastX LINE_CR1-L2 158708 158848 44 + . . scaffold1651 TRF Tandem_Repeat 173904 173950 69 + . . scaffold1651 TRF Tandem_Repeat 180626 181815 1509 + . . scaffold1651 TRF Tandem_Repeat 188567 188746 83 + . . scaffold1652 GLEAN promoter 214 1213 1 + . ID=CGI_10012376; scaffold1652 GLEAN mRNA 1214 10229 1 + . ID=CGI_10012376; scaffold1652 TRF Tandem_Repeat 6960 7236 319 + . . scaffold1652 TRF Tandem_Repeat 15556 15714 201 + . . scaffold1652 GLEAN mRNA 17553 18254 0.996814 - . ID=CGI_10012377; scaffold1652 GLEAN promoter 18255 19254 0.996814 - . ID=CGI_10012377; scaffold1652 GLEAN promoter 21269 22268 0.666531 + . ID=CGI_10012378; scaffold1652 GLEAN mRNA 22269 58693 0.666531 + . ID=CGI_10012378; scaffold1652 TRF Tandem_Repeat 39528 39570 68 + . . scaffold1652 TRF Tandem_Repeat 48606 48638 66 + . . scaffold1652 TRF Tandem_Repeat 50485 50540 67 + . . scaffold1652 GLEAN mRNA 61735 72421 0.812526 - . ID=CGI_10012379; scaffold1652 TRF Tandem_Repeat 61919 62096 162 + . . scaffold1652 TRF Tandem_Repeat 61939 62099 119 + . . scaffold1652 TRF Tandem_Repeat 61957 62096 145 + . . scaffold1652 TRF Tandem_Repeat 62680 62736 114 + . . scaffold1652 TRF Tandem_Repeat 62784 62820 65 + . . scaffold1652 TRF Tandem_Repeat 67735 67950 143 + . . scaffold1652 TRF Tandem_Repeat 72081 72205 142 + . . scaffold1652 GLEAN promoter 72422 73421 0.812526 - . ID=CGI_10012379; scaffold1652 GLEAN mRNA 72542 78582 0.999997 - . ID=CGI_10012380; scaffold1652 TRF Tandem_Repeat 74683 74723 82 + . . scaffold1652 GLEAN promoter 78583 79582 0.999997 - . ID=CGI_10012380; scaffold1652 GLEAN mRNA 81006 84480 0.827444 - . ID=CGI_10012381; scaffold1652 GLEAN promoter 84481 85480 0.827444 - . ID=CGI_10012381; scaffold1652 TRF Tandem_Repeat 87580 87675 83 + . . scaffold1652 GLEAN mRNA 91621 102912 0.999676 - . ID=CGI_10012382; scaffold1652 TRF Tandem_Repeat 102039 102074 72 + . . scaffold1652 GLEAN promoter 102913 103912 0.999676 - . ID=CGI_10012382; scaffold1652 GLEAN mRNA 106686 110707 0.999415 - . ID=CGI_10012383; scaffold1652 GLEAN promoter 110708 111707 0.999415 - . ID=CGI_10012383; scaffold1652 GLEAN promoter 110905 111904 0.714436 + . ID=CGI_10012384; scaffold1652 GLEAN mRNA 111905 116391 0.714436 + . ID=CGI_10012384; scaffold1652 TRF Tandem_Repeat 115322 115979 1032 + . . scaffold1652 GLEAN promoter 120822 121821 0.999999 + . ID=CGI_10012385; scaffold1652 GLEAN mRNA 121822 130148 0.999999 + . ID=CGI_10012385; scaffold1652 TRF Tandem_Repeat 122964 123030 79 + . . scaffold1652 TRF Tandem_Repeat 128798 128864 125 + . . scaffold1652 GLEAN promoter 132436 133435 0.998356 + . ID=CGI_10012386; scaffold1652 GLEAN mRNA 133436 134998 0.998356 + . ID=CGI_10012386; scaffold1652 TRF Tandem_Repeat 135605 135670 125 + . . scaffold1652 GLEAN promoter 136165 137164 0.995871 + . ID=CGI_10012387; scaffold1652 GLEAN mRNA 137165 143874 0.995871 + . ID=CGI_10012387; scaffold1652 TRF Tandem_Repeat 138227 138251 50 + . . scaffold1652 GLEAN mRNA 145949 162161 0.999412 - . ID=CGI_10012388; scaffold1652 TRF Tandem_Repeat 151901 151934 52 + . . scaffold1652 TRF Tandem_Repeat 153240 154366 1672 + . . scaffold1652 TRF Tandem_Repeat 154390 154447 62 + . . scaffold1652 TRF Tandem_Repeat 154390 154439 55 + . . scaffold1652 TRF Tandem_Repeat 154393 154448 67 + . . scaffold1652 GLEAN promoter 162162 163161 0.999412 - . ID=CGI_10012388; scaffold1652 GLEAN mRNA 166396 175989 0.955041 - . ID=CGI_10012389; scaffold1652 TRF Tandem_Repeat 172642 173032 610 + . . scaffold1652 TRF Tandem_Repeat 172642 173032 610 + . . scaffold1652 TRF Tandem_Repeat 173580 173689 193 + . . scaffold1652 GLEAN promoter 175990 176989 0.955041 - . ID=CGI_10012389; scaffold1652 GLEAN promoter 179873 180872 1 + . ID=CGI_10012390; scaffold1652 GLEAN mRNA 180873 189339 1 + . ID=CGI_10012390; scaffold1652 TRF Tandem_Repeat 183248 183282 70 + . . scaffold1652 TRF Tandem_Repeat 186884 187833 1115 + . . scaffold1652 GLEAN mRNA 189387 197117 0.999949 - . ID=CGI_10012391; scaffold1652 TRF Tandem_Repeat 192364 192524 61 + . . scaffold1652 TRF Tandem_Repeat 193527 194293 967 + . . scaffold1652 GLEAN promoter 197118 198117 0.999949 - . ID=CGI_10012391; scaffold1652 TRF Tandem_Repeat 201349 201409 52 + . . scaffold1652 TRF Tandem_Repeat 201481 201529 53 + . . scaffold1652 TRF Tandem_Repeat 202531 202570 80 + . . scaffold1652 TRF Tandem_Repeat 204512 204558 76 + . . scaffold1652 TRF Tandem_Repeat 205055 205141 95 + . . scaffold1652 TRF Tandem_Repeat 205067 205154 63 + . . scaffold1652 TRF Tandem_Repeat 210086 211178 1372 + . . scaffold1652 TRF Tandem_Repeat 213206 213263 73 + . . scaffold1652 TRF Tandem_Repeat 213206 213257 86 + . . scaffold1652 GLEAN mRNA 219616 223268 0.92422 - . ID=CGI_10012392; scaffold1652 GLEAN promoter 223269 224268 0.92422 - . ID=CGI_10012392; scaffold1652 GLEAN mRNA 224467 242523 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX RC_Helitron 224905 225096 45 - . . scaffold1652 WUBlastX LINE_CR1 225573 225779 25 - . . scaffold1652 WUBlastX RC_Helitron 226018 227061 137 - . . scaffold1652 WUBlastX RC_Helitron 226231 231123 2518 - . . scaffold1652 WUBlastX RC_Helitron 230380 231489 87 - . . scaffold1652 WUBlastX RC_Helitron 230605 231291 381 - . . scaffold1652 WUBlastX RC_Helitron 231487 232071 56 - . . scaffold1652 TRF Tandem_Repeat 234415 234570 100 + . . scaffold1652 TRF Tandem_Repeat 234440 234560 66 + . . scaffold1652 TRF Tandem_Repeat 239948 240029 78 + . . scaffold1652 TRF Tandem_Repeat 239959 240029 88 + . . scaffold1652 TRF Tandem_Repeat 240070 240144 143 + . . scaffold1652 GLEAN promoter 242524 243523 0.999676 - . ID=CGI_10012393; scaffold1652 WUBlastX LINE_RTE-X 244099 244314 98 - . . scaffold1652 WUBlastX LINE_RTE-X 244668 244916 28 - . . scaffold1652 WUBlastX LINE_RTE-X 244847 245326 68 - . . scaffold1652 WUBlastX LINE_RTE-X 244874 245410 28 - . . scaffold1652 WUBlastX LINE_RTE-X 246753 246818 23 - . . scaffold1652 GLEAN promoter 247434 248433 0.627942 + . ID=CGI_10012394; scaffold1652 GLEAN mRNA 248434 255891 0.627942 + . ID=CGI_10012394; scaffold1652 TRF Tandem_Repeat 254238 254552 576 + . . scaffold1652 TRF Tandem_Repeat 255900 256274 504 + . . scaffold1652 TRF Tandem_Repeat 255900 256274 583 + . . scaffold1652 TRF Tandem_Repeat 259194 259225 64 + . . scaffold1652 GLEAN mRNA 263902 285990 0.976399 - . ID=CGI_10012395; scaffold1652 TRF Tandem_Repeat 278911 279012 95 + . . scaffold1652 GLEAN promoter 285991 286990 0.976399 - . ID=CGI_10012395; scaffold1652 TRF Tandem_Repeat 286960 287033 148 + . . scaffold1652 TRF Tandem_Repeat 287216 287254 78 + . . scaffold1652 GLEAN promoter 289385 290384 0.994237 + . ID=CGI_10012396; scaffold1652 GLEAN mRNA 290385 290630 0.994237 + . ID=CGI_10012396; scaffold1652 GLEAN promoter 290626 291625 0.997776 + . ID=CGI_10012397; scaffold1652 GLEAN mRNA 291626 293090 0.997776 + . ID=CGI_10012397; scaffold1652 TRF Tandem_Repeat 294413 294460 96 + . . scaffold1652 TRF Tandem_Repeat 295008 295033 52 + . . scaffold1652 TRF Tandem_Repeat 297896 298597 601 + . . scaffold1652 TRF Tandem_Repeat 298128 298594 422 + . . scaffold1652 TRF Tandem_Repeat 298150 298204 55 + . . scaffold1652 TRF Tandem_Repeat 298477 299462 879 + . . scaffold1652 TRF Tandem_Repeat 298477 299462 1060 + . . scaffold1652 TRF Tandem_Repeat 298477 299462 1009 + . . scaffold1652 TRF Tandem_Repeat 301606 301659 108 + . . scaffold1652 TRF Tandem_Repeat 303250 303310 122 + . . scaffold1652 TRF Tandem_Repeat 307335 307672 432 + . . scaffold1652 TRF Tandem_Repeat 308529 308781 273 + . . scaffold1652 GLEAN mRNA 314383 324446 0.999949 - . ID=CGI_10012398; scaffold1652 GLEAN promoter 324447 324516 0.999949 - . ID=CGI_10012398; scaffold1653 TRF Tandem_Repeat 4045 4088 88 + . . scaffold1653 TRF Tandem_Repeat 4088 4177 173 + . . scaffold1653 TRF Tandem_Repeat 4261 4299 78 + . . scaffold1653 WUBlastX LINE_RTE-X 5537 6262 168 - . . scaffold1653 WUBlastX LINE_RTE-X 6228 6641 62 - . . scaffold1653 WUBlastX LINE_RTE-X 6240 6575 64 - . . scaffold1653 WUBlastX LINE_L1 6642 6908 154 - . . scaffold1653 WUBlastX LINE_L1 6925 7311 72 - . . scaffold1653 GLEAN mRNA 9481 13720 0.662343 - . ID=CGI_10002251; scaffold1653 TRF Tandem_Repeat 13490 13535 56 + . . scaffold1653 GLEAN promoter 13721 14720 0.662343 - . ID=CGI_10002251; scaffold1653 TRF Tandem_Repeat 27597 27634 76 + . . scaffold1653 WUBlastX DNA_TcMar-Ant1 29741 30106 89 - . . scaffold1653 GLEAN mRNA 29747 39764 0.980452 - . ID=CGI_10002252; scaffold1653 WUBlastX DNA_TcMar-ISRm1 29753 29953 97 - . . scaffold1653 GLEAN promoter 34905 35904 1 + . ID=CGI_10002253; scaffold1653 GLEAN mRNA 35905 38447 1 + . ID=CGI_10002253; scaffold1653 GLEAN promoter 39765 40294 0.980452 - . ID=CGI_10002252; scaffold1654 WUBlastX LINE_RTE-BovB 9342 10592 609 + . . scaffold1654 WUBlastX LINE_RTE-BovB 10446 10631 40 + . . scaffold1654 WUBlastX LINE_RTE-BovB 10625 10897 222 + . . scaffold1654 WUBlastX LINE_RTE-BovB 10739 11479 207 + . . scaffold1654 WUBlastX LINE_RTE-BovB 11501 11929 265 + . . scaffold1654 WUBlastX LINE_RTE-BovB 11929 12300 208 + . . scaffold1654 TRF Tandem_Repeat 17599 17669 124 + . . scaffold1654 TRF Tandem_Repeat 17679 18510 1137 + . . scaffold1654 TRF Tandem_Repeat 25678 25724 85 + . . scaffold1654 WUBlastX LINE_Penelope 26211 26483 62 + . . scaffold1654 GLEAN promoter 26749 27748 0.503036 + . ID=CGI_10004123; scaffold1654 GLEAN mRNA 27749 35815 0.503036 + . ID=CGI_10004123; scaffold1654 TRF Tandem_Repeat 32713 32767 56 + . . scaffold1654 GLEAN mRNA 35939 40872 0.956995 - . ID=CGI_10004124; scaffold1654 TRF Tandem_Repeat 36834 37563 643 + . . scaffold1654 TRF Tandem_Repeat 36889 37563 589 + . . scaffold1654 GLEAN promoter 40873 41872 0.956995 - . ID=CGI_10004124; scaffold1654 WUBlastX DNA_Kolobok 43553 43777 124 + . . scaffold1654 WUBlastX DNA_hAT-Tip100 54088 55845 1290 - . . scaffold1654 WUBlastX DNA_hAT-Tip100 54121 56160 477 - . . scaffold1654 WUBlastX DNA_hAT-Tip100 54619 56433 137 - . . scaffold1654 TRF Tandem_Repeat 58435 58478 70 + . . scaffold1654 TRF Tandem_Repeat 69429 69566 183 + . . scaffold1654 TRF Tandem_Repeat 73411 73451 82 + . . scaffold1654 TRF Tandem_Repeat 76112 76206 59 + . . scaffold1654 GLEAN promoter 80531 81530 0.790661 + . ID=CGI_10004125; scaffold1654 GLEAN mRNA 81531 89750 0.790661 + . ID=CGI_10004125; scaffold1654 TRF Tandem_Repeat 82586 82687 100 + . . scaffold1654 TRF Tandem_Repeat 85687 85711 50 + . . scaffold1654 TRF Tandem_Repeat 90436 90583 167 + . . scaffold1656 GLEAN mRNA 437 697 0.618241 - . ID=CGI_10006140; scaffold1656 GLEAN promoter 698 1697 0.618241 - . ID=CGI_10006140; scaffold1656 WUBlastX LINE_Penelope 6424 6720 56 - . . scaffold1656 TRF Tandem_Repeat 6740 6774 63 + . . scaffold1656 TRF Tandem_Repeat 8512 8578 134 + . . scaffold1656 WUBlastX LINE_Penelope 12180 12656 53 + . . scaffold1656 WUBlastX LINE_Penelope 12372 12623 57 + . . scaffold1656 WUBlastX LINE_Penelope 12477 12629 59 + . . scaffold1656 WUBlastX LINE_Penelope 12655 13014 26 + . . scaffold1656 TRF Tandem_Repeat 20870 20920 102 + . . scaffold1656 TRF Tandem_Repeat 22337 22367 62 + . . scaffold1656 TRF Tandem_Repeat 24579 24640 115 + . . scaffold1656 WUBlastX LINE_RTE-X 27171 28457 418 + . . scaffold1656 GLEAN mRNA 45907 73911 0.308617 - . ID=CGI_10006142; scaffold1656 TRF Tandem_Repeat 60834 60875 59 + . . scaffold1656 WUBlastX LTR_DIRS 62642 62836 47 + . . scaffold1656 WUBlastX LTR_DIRS 62997 63104 41 + . . scaffold1656 GLEAN promoter 72832 73831 0.912224 + . ID=CGI_10006143; scaffold1656 WUBlastX LINE_RTE-BovB 73541 73825 75 + . . scaffold1656 GLEAN mRNA 73832 80261 0.912224 + . ID=CGI_10006143; scaffold1656 GLEAN promoter 73912 74911 0.308617 - . ID=CGI_10006142; scaffold1656 WUBlastX LTR_Gypsy-Troyk 74783 76264 75 + . . scaffold1656 WUBlastX LTR_Gypsy-Troyk 74818 75384 117 + . . scaffold1656 WUBlastX LTR_Gypsy-Troyk 75390 75638 87 + . . scaffold1656 TRF Tandem_Repeat 76323 76371 98 + . . scaffold1656 GLEAN mRNA 97513 97815 0.481166 - . ID=CGI_10006144; scaffold1656 GLEAN promoter 97816 98815 0.481166 - . ID=CGI_10006144; scaffold1656 WUBlastX LINE_Penelope 101910 102497 91 - . . scaffold1656 WUBlastX LINE_Penelope 102204 102551 34 - . . scaffold1656 TRF Tandem_Repeat 103208 103593 204 + . . scaffold1656 TRF Tandem_Repeat 103274 103462 172 + . . scaffold1656 TRF Tandem_Repeat 107917 108676 1102 + . . scaffold1656 TRF Tandem_Repeat 109608 109669 106 + . . scaffold1656 GLEAN mRNA 116802 126372 0.949613 - . ID=CGI_10006145; scaffold1656 WUBlastX LTR_Ngaro 122252 122476 58 - . . scaffold1656 WUBlastX LTR_Ngaro 122631 122903 50 - . . scaffold1656 WUBlastX LTR_Ngaro 122733 122861 78 - . . scaffold1656 WUBlastX LTR_Ngaro 122733 122897 72 - . . scaffold1656 WUBlastX LTR_Ngaro 122947 123090 28 - . . scaffold1656 TRF Tandem_Repeat 124340 124383 88 + . . scaffold1656 TRF Tandem_Repeat 125026 125054 58 + . . scaffold1656 GLEAN promoter 126373 127372 0.949613 - . ID=CGI_10006145; scaffold1656 TRF Tandem_Repeat 129499 129566 57 + . . scaffold1656 WUBlastX DNA_TcMar-Tc1 129963 130982 390 - . . scaffold1656 WUBlastX DNA_TcMar 130794 131042 32 - . . scaffold1656 TRF Tandem_Repeat 134061 134112 77 + . . scaffold1656 TRF Tandem_Repeat 135977 136021 90 + . . scaffold1656 TRF Tandem_Repeat 138870 138963 98 + . . scaffold1656 TRF Tandem_Repeat 142055 142143 178 + . . scaffold1656 GLEAN promoter 144697 145696 1 + . ID=CGI_10006146; scaffold1656 GLEAN mRNA 145697 146263 1 + . ID=CGI_10006146; scaffold1658 GLEAN mRNA 303 6611 1 - . ID=CGI_10001615; scaffold1658 GLEAN promoter 6612 7611 1 - . ID=CGI_10001615; scaffold1658 GLEAN mRNA 9002 16785 0.526368 - . ID=CGI_10001616; scaffold1658 GLEAN promoter 16786 17785 0.526368 - . ID=CGI_10001616; scaffold1659 TRF Tandem_Repeat 2151 2220 70 + . . scaffold1659 TRF Tandem_Repeat 2157 2258 59 + . . scaffold1659 GLEAN promoter 3365 4364 0.650917 + . ID=CGI_10001326; scaffold1659 TRF Tandem_Repeat 3496 3557 124 + . . scaffold1659 GLEAN mRNA 4365 18372 0.650917 + . ID=CGI_10001326; scaffold1659 TRF Tandem_Repeat 5103 5157 101 + . . scaffold1659 TRF Tandem_Repeat 6299 6351 97 + . . scaffold1659 WUBlastX DNA_Harbinger 6608 6754 24 + . . scaffold1659 WUBlastX DNA_Harbinger 6877 7077 90 + . . scaffold1659 WUBlastX DNA_Harbinger 6904 7071 103 + . . scaffold1659 TRF Tandem_Repeat 13810 13876 80 + . . scaffold1659 TRF Tandem_Repeat 16213 16249 74 + . . scaffold1660 GLEAN mRNA 24935 32483 0.999448 - . ID=CGI_10002142; scaffold1660 GLEAN promoter 32484 33483 0.999448 - . ID=CGI_10002142; scaffold1661 TRF Tandem_Repeat 5034 5073 71 + . . scaffold1661 WUBlastX LINE_L1-Tx1 5487 8351 1249 - . . scaffold1661 TRF Tandem_Repeat 9028 9075 60 + . . scaffold1661 TRF Tandem_Repeat 9302 9358 54 + . . scaffold1661 TRF Tandem_Repeat 9625 9670 83 + . . scaffold1662 GLEAN promoter 1 926 0.229192 + . ID=CGI_10004949; scaffold1662 GLEAN mRNA 927 30833 0.229192 + . ID=CGI_10004949; scaffold1662 GLEAN mRNA 17255 20157 0.972245 - . ID=CGI_10004950; scaffold1662 GLEAN promoter 20158 21157 0.972245 - . ID=CGI_10004950; scaffold1662 GLEAN promoter 44261 45260 0.998205 + . ID=CGI_10004951; scaffold1662 GLEAN mRNA 45261 48657 0.998205 + . ID=CGI_10004951; scaffold1662 GLEAN promoter 56060 57059 0.990795 + . ID=CGI_10004952; scaffold1662 GLEAN mRNA 57060 57644 0.990795 + . ID=CGI_10004952; scaffold1662 GLEAN promoter 57993 58992 1 + . ID=CGI_10004953; scaffold1662 GLEAN mRNA 58993 61075 1 + . ID=CGI_10004953; scaffold1662 GLEAN mRNA 60801 61061 0.601127 - . ID=CGI_10004954; scaffold1662 GLEAN promoter 61062 62061 0.601127 - . ID=CGI_10004954; scaffold1662 GLEAN mRNA 61719 62782 1 - . ID=CGI_10004955; scaffold1662 GLEAN promoter 62783 63782 1 - . ID=CGI_10004955; scaffold1662 GLEAN promoter 64357 65356 0.648097 + . ID=CGI_10004956; scaffold1662 GLEAN mRNA 65357 114219 0.648097 + . ID=CGI_10004956; scaffold1662 GLEAN mRNA 81086 89255 0.999675 - . ID=CGI_10004957; scaffold1662 GLEAN promoter 89256 90255 0.999675 - . ID=CGI_10004957; scaffold1663 GLEAN promoter 1082 2081 0.985105 + . ID=CGI_10009862; scaffold1663 GLEAN mRNA 2082 14069 0.985105 + . ID=CGI_10009862; scaffold1663 WUBlastX LINE_L1-Tx1 3508 4392 23 + . . scaffold1663 WUBlastX LINE_L1-Tx1 3811 4365 100 + . . scaffold1663 TRF Tandem_Repeat 5170 5257 140 + . . scaffold1663 TRF Tandem_Repeat 8509 8980 521 + . . scaffold1663 GLEAN mRNA 14275 33810 0.998969 - . ID=CGI_10009863; scaffold1663 TRF Tandem_Repeat 16670 17007 478 + . . scaffold1663 WUBlastX LINE_RTE-X 17689 18027 32 + . . scaffold1663 WUBlastX LINE_RTE-X 17800 18027 52 + . . scaffold1663 WUBlastX LINE_RTE-X 18006 18299 74 + . . scaffold1663 TRF Tandem_Repeat 24581 24623 50 + . . scaffold1663 GLEAN promoter 33811 34810 0.998969 - . ID=CGI_10009863; scaffold1663 WUBlastX LINE_CR1-L2 61063 61554 170 - . . scaffold1663 WUBlastX LINE_CR1-L2 61105 61656 81 - . . scaffold1663 GLEAN mRNA 68504 119090 0.88293 - . ID=CGI_10009864; scaffold1663 TRF Tandem_Repeat 71708 71754 85 + . . scaffold1663 TRF Tandem_Repeat 92283 92359 154 + . . scaffold1663 TRF Tandem_Repeat 95862 95897 63 + . . scaffold1663 WUBlastX DNA_MuDR 106829 108034 377 - . . scaffold1663 WUBlastX DNA_MuDR 108033 108587 62 - . . scaffold1663 WUBlastX DNA_MuDR 108075 108521 178 - . . scaffold1663 WUBlastX DNA_MuDR 108473 108913 29 - . . scaffold1663 WUBlastX LINE_CR1 109695 109859 21 + . . scaffold1663 WUBlastX LINE_CR1 109743 109859 35 + . . scaffold1663 WUBlastX LINE_CR1 109788 109877 27 + . . scaffold1663 WUBlastX LINE_L2 109874 110905 139 + . . scaffold1663 TRF Tandem_Repeat 115427 115637 169 + . . scaffold1663 GLEAN promoter 119091 120090 0.88293 - . ID=CGI_10009864; scaffold1663 GLEAN mRNA 120804 122770 0.969132 - . ID=CGI_10009865; scaffold1663 GLEAN promoter 122771 123770 0.969132 - . ID=CGI_10009865; scaffold1663 TRF Tandem_Repeat 136456 136500 60 + . . scaffold1663 WUBlastX DNA_Harbinger 147944 148312 118 + . . scaffold1663 WUBlastX DNA_Harbinger 148834 149031 70 + . . scaffold1663 WUBlastX DNA_Harbinger 148909 149070 101 + . . scaffold1663 WUBlastX DNA_Harbinger 148912 149031 133 + . . scaffold1663 WUBlastX DNA_Harbinger 149236 149355 51 + . . scaffold1663 TRF Tandem_Repeat 150041 150083 86 + . . scaffold1663 WUBlastX DNA_Harbinger 150638 151006 248 + . . scaffold1663 TRF Tandem_Repeat 151379 151442 69 + . . scaffold1663 TRF Tandem_Repeat 151506 151531 52 + . . scaffold1663 WUBlastX DNA_Harbinger 157239 157412 36 - . . scaffold1663 TRF Tandem_Repeat 157783 157810 56 + . . scaffold1663 TRF Tandem_Repeat 175549 175716 201 + . . scaffold1663 TRF Tandem_Repeat 175549 175802 213 + . . scaffold1663 TRF Tandem_Repeat 175679 175799 125 + . . scaffold1663 TRF Tandem_Repeat 179949 179996 96 + . . scaffold1663 TRF Tandem_Repeat 193033 193097 121 + . . scaffold1663 TRF Tandem_Repeat 194600 194936 372 + . . scaffold1663 TRF Tandem_Repeat 194602 194944 337 + . . scaffold1663 TRF Tandem_Repeat 195588 195927 581 + . . scaffold1663 GLEAN promoter 201843 202842 0.488082 + . ID=CGI_10009866; scaffold1663 GLEAN mRNA 202843 206763 0.488082 + . ID=CGI_10009866; scaffold1663 TRF Tandem_Repeat 203304 203341 67 + . . scaffold1663 TRF Tandem_Repeat 203465 203489 50 + . . scaffold1663 TRF Tandem_Repeat 208005 208182 80 + . . scaffold1663 GLEAN promoter 208484 209483 0.466972 + . ID=CGI_10009867; scaffold1663 TRF Tandem_Repeat 208801 208869 129 + . . scaffold1663 GLEAN mRNA 209484 223574 0.466972 + . ID=CGI_10009867; scaffold1663 TRF Tandem_Repeat 210833 210872 71 + . . scaffold1663 TRF Tandem_Repeat 220374 220453 99 + . . scaffold1663 TRF Tandem_Repeat 223913 223999 129 + . . scaffold1663 TRF Tandem_Repeat 228493 228620 52 + . . scaffold1663 GLEAN mRNA 229915 233443 1 - . ID=CGI_10009868; scaffold1663 GLEAN promoter 233444 234443 1 - . ID=CGI_10009868; scaffold1663 TRF Tandem_Repeat 240795 240861 107 + . . scaffold1664 TRF Tandem_Repeat 6140 6171 64 + . . scaffold1664 GLEAN mRNA 12870 13550 0.996819 - . ID=CGI_10002933; scaffold1664 GLEAN promoter 13551 14550 0.996819 - . ID=CGI_10002933; scaffold1664 TRF Tandem_Repeat 17301 17342 84 + . . scaffold1664 TRF Tandem_Repeat 22596 22667 135 + . . scaffold1664 GLEAN promoter 36696 37695 0.876045 + . ID=CGI_10002936; scaffold1664 GLEAN mRNA 37696 39169 0.876045 + . ID=CGI_10002936; scaffold1664 WUBlastX LTR_Ngaro 43213 43794 155 + . . scaffold1664 WUBlastX LTR_Ngaro 43333 43824 177 + . . scaffold1664 WUBlastX LTR_Ngaro 43411 43950 61 + . . scaffold1664 WUBlastX LTR_Ngaro 44081 45658 1021 + . . scaffold1664 WUBlastX LTR_Ngaro 45574 46536 371 + . . scaffold1665 TRF Tandem_Repeat 5584 5644 122 + . . scaffold1665 WUBlastX LTR_Gypsy 11605 11955 243 + . . scaffold1665 WUBlastX LTR_Gypsy 11951 12115 99 + . . scaffold1665 WUBlastX LTR_Gypsy 12738 13001 60 + . . scaffold1665 WUBlastX LTR_Gypsy 14982 15257 41 + . . scaffold1665 WUBlastX LTR_Gypsy 15039 15200 79 + . . scaffold1665 WUBlastX LTR_Gypsy 15251 15349 29 + . . scaffold1665 WUBlastX LTR_Gypsy 16636 16761 47 + . . scaffold1665 WUBlastX LTR_Gypsy 17191 17244 35 + . . scaffold1665 WUBlastX LTR_ERVK 18147 18425 26 + . . scaffold1665 WUBlastX LTR_Gypsy-Cigr 18192 18428 27 + . . scaffold1665 WUBlastX LTR_Gypsy 18282 18410 39 + . . scaffold1665 WUBlastX LTR_Gypsy 18345 18437 52 + . . scaffold1665 WUBlastX LTR_Gypsy 18345 18485 36 + . . scaffold1665 WUBlastX LTR_Gypsy 18496 18987 159 + . . scaffold1665 WUBlastX LTR_Gypsy 18969 19823 436 + . . scaffold1665 WUBlastX LTR_Gypsy 19074 19703 640 + . . scaffold1665 WUBlastX LTR_Gypsy 19789 20208 153 + . . scaffold1665 WUBlastX LTR_Gypsy 19828 20142 300 + . . scaffold1665 WUBlastX LTR_Gypsy 20057 20329 69 + . . scaffold1665 WUBlastX LTR_Gypsy 20256 20819 587 + . . scaffold1665 WUBlastX LTR_Gypsy 20830 21495 446 + . . scaffold1665 TRF Tandem_Repeat 24217 24250 50 + . . scaffold1665 TRF Tandem_Repeat 32754 32800 94 + . . scaffold1665 GLEAN promoter 37913 38912 1 + . ID=CGI_10015197; scaffold1665 GLEAN mRNA 38913 41516 1 + . ID=CGI_10015197; scaffold1665 TRF Tandem_Repeat 39865 39889 50 + . . scaffold1665 TRF Tandem_Repeat 44385 44651 319 + . . scaffold1665 TRF Tandem_Repeat 51745 51836 98 + . . scaffold1665 TRF Tandem_Repeat 53817 53904 126 + . . scaffold1665 GLEAN mRNA 55037 82274 0.991575 - . ID=CGI_10015198; scaffold1665 TRF Tandem_Repeat 76195 76247 106 + . . scaffold1665 GLEAN promoter 82275 83274 0.991575 - . ID=CGI_10015198; scaffold1665 WUBlastX LTR_Gypsy 84195 84266 21 + . . scaffold1665 WUBlastX LTR_Gypsy 84417 84548 35 + . . scaffold1665 WUBlastX LTR_Gypsy 84584 85120 118 + . . scaffold1665 GLEAN mRNA 97402 103136 0.999177 - . ID=CGI_10015199; scaffold1665 TRF Tandem_Repeat 99229 99713 252 + . . scaffold1665 TRF Tandem_Repeat 101095 101139 90 + . . scaffold1665 GLEAN promoter 103137 104136 0.999177 - . ID=CGI_10015199; scaffold1665 TRF Tandem_Repeat 114592 114663 144 + . . scaffold1665 WUBlastX LINE_Penelope 121129 121308 55 - . . scaffold1665 WUBlastX LINE_Penelope 121627 121959 46 - . . scaffold1665 WUBlastX LINE_Penelope 121681 122004 76 - . . scaffold1665 WUBlastX LINE_Penelope 122012 122518 286 - . . scaffold1665 GLEAN mRNA 129924 142467 0.651132 - . ID=CGI_10015200; scaffold1665 WUBlastX LINE_RTE-X 134062 134331 114 + . . scaffold1665 WUBlastX LINE_RTE-X 134131 134367 69 + . . scaffold1665 GLEAN promoter 138037 139036 1 + . ID=CGI_10015201; scaffold1665 GLEAN mRNA 139037 142401 1 + . ID=CGI_10015201; scaffold1665 GLEAN promoter 142468 143467 0.651132 - . ID=CGI_10015200; scaffold1665 GLEAN promoter 146782 147781 0.995029 + . ID=CGI_10015202; scaffold1665 GLEAN mRNA 147782 159312 0.995029 + . ID=CGI_10015202; scaffold1665 GLEAN promoter 160410 161409 0.999898 + . ID=CGI_10015203; scaffold1665 GLEAN mRNA 161410 179700 0.999898 + . ID=CGI_10015203; scaffold1665 GLEAN mRNA 180895 184847 0.999612 - . ID=CGI_10015204; scaffold1665 GLEAN promoter 184848 185847 0.999612 - . ID=CGI_10015204; scaffold1665 GLEAN mRNA 188789 194793 0.648545 - . ID=CGI_10015205; scaffold1665 TRF Tandem_Repeat 189936 190107 192 + . . scaffold1665 TRF Tandem_Repeat 189987 190311 272 + . . scaffold1665 GLEAN promoter 194794 195793 0.648545 - . ID=CGI_10015205; scaffold1665 TRF Tandem_Repeat 194811 194961 125 + . . scaffold1665 TRF Tandem_Repeat 194864 195018 66 + . . scaffold1665 WUBlastX LINE_RTE-X 214789 214947 105 - . . scaffold1665 WUBlastX LINE_RTE-X 214806 215258 60 - . . scaffold1665 WUBlastX LINE_RTE-X 214810 214986 73 - . . scaffold1665 GLEAN mRNA 220836 229215 0.994598 - . ID=CGI_10015206; scaffold1665 WUBlastX LTR_Gypsy 222388 222915 183 + . . scaffold1665 WUBlastX LTR_Gypsy 222559 224274 558 + . . scaffold1665 GLEAN promoter 229216 230215 0.994598 - . ID=CGI_10015206; scaffold1665 TRF Tandem_Repeat 231484 231569 117 + . . scaffold1665 WUBlastX LTR_Ngaro 232540 232878 176 - . . scaffold1665 WUBlastX LTR_Ngaro 232555 232824 182 - . . scaffold1665 WUBlastX LTR_Ngaro 232869 233324 165 - . . scaffold1665 WUBlastX LTR_Ngaro 233513 234856 841 - . . scaffold1665 WUBlastX LTR_Ngaro 235127 235429 91 - . . scaffold1665 WUBlastX LTR_Gypsy 235539 235646 28 - . . scaffold1665 WUBlastX LINE_Penelope 236020 236544 93 + . . scaffold1665 WUBlastX LINE_Penelope 236110 236535 239 + . . scaffold1665 WUBlastX LINE_Penelope 236546 237424 381 + . . scaffold1665 WUBlastX LINE_Penelope 237480 237962 133 + . . scaffold1665 TRF Tandem_Repeat 239628 239698 51 + . . scaffold1665 WUBlastX LINE_RTE-X 241061 241219 105 - . . scaffold1665 WUBlastX LINE_RTE-X 241078 241530 42 - . . scaffold1665 WUBlastX LINE_RTE-X 241082 241258 72 - . . scaffold1665 GLEAN mRNA 271619 275143 0.96612 - . ID=CGI_10015207; scaffold1665 GLEAN promoter 275144 276143 0.96612 - . ID=CGI_10015207; scaffold1665 GLEAN mRNA 276273 289823 0.55838 - . ID=CGI_10015208; scaffold1665 GLEAN promoter 289824 290823 0.55838 - . ID=CGI_10015208; scaffold1665 TRF Tandem_Repeat 294536 294599 64 + . . scaffold1665 GLEAN mRNA 295575 302313 0.98923 - . ID=CGI_10015209; scaffold1665 GLEAN promoter 302314 303313 0.98923 - . ID=CGI_10015209; scaffold1665 TRF Tandem_Repeat 306551 306595 90 + . . scaffold1665 GLEAN promoter 307042 308041 0.999998 + . ID=CGI_10015210; scaffold1665 GLEAN mRNA 308042 308590 0.999998 + . ID=CGI_10015210; scaffold1665 GLEAN promoter 313618 314617 0.43532 + . ID=CGI_10015211; scaffold1665 GLEAN mRNA 314618 349133 0.43532 + . ID=CGI_10015211; scaffold1665 TRF Tandem_Repeat 316133 316191 118 + . . scaffold1665 TRF Tandem_Repeat 317216 317259 88 + . . scaffold1665 TRF Tandem_Repeat 339851 339908 116 + . . scaffold1665 TRF Tandem_Repeat 340260 340285 52 + . . scaffold1665 TRF Tandem_Repeat 341495 341563 95 + . . scaffold1665 TRF Tandem_Repeat 345587 345642 112 + . . scaffold1665 GLEAN promoter 354017 355016 0.991247 + . ID=CGI_10015212; scaffold1665 TRF Tandem_Repeat 354374 354426 90 + . . scaffold1665 GLEAN mRNA 355017 356780 0.991247 + . ID=CGI_10015212; scaffold1665 TRF Tandem_Repeat 357241 357323 85 + . . scaffold1665 GLEAN mRNA 363443 364243 0.999338 - . ID=CGI_10015213; scaffold1665 GLEAN promoter 364244 365243 0.999338 - . ID=CGI_10015213; scaffold1665 WUBlastX DNA_TcMar-Tc1 388643 389590 239 - . . scaffold1665 TRF Tandem_Repeat 391945 392001 98 + . . scaffold1665 TRF Tandem_Repeat 392198 392232 70 + . . scaffold1665 GLEAN mRNA 393035 394675 0.999661 - . ID=CGI_10015214; scaffold1665 GLEAN promoter 394676 395675 0.999661 - . ID=CGI_10015214; scaffold1665 WUBlastX LINE_RTE-X 395242 395562 24 - . . scaffold1665 WUBlastX LINE_RTE-X 395335 395550 46 - . . scaffold1665 WUBlastX LINE_RTE-X 395428 395637 59 - . . scaffold1665 WUBlastX LINE_RTE-X 396014 396109 43 - . . scaffold1665 WUBlastX LINE_RTE-X 396020 396133 39 - . . scaffold1665 GLEAN mRNA 398422 398793 1 - . ID=CGI_10015215; scaffold1665 GLEAN promoter 398794 399793 1 - . ID=CGI_10015215; scaffold1665 GLEAN mRNA 398851 400083 1 - . ID=CGI_10015216; scaffold1665 GLEAN promoter 400084 401083 1 - . ID=CGI_10015216; scaffold1665 WUBlastX LINE_RTE-X 405466 405594 28 - . . scaffold1665 WUBlastX LINE_RTE-X 405602 405748 61 - . . scaffold1665 TRF Tandem_Repeat 411167 411242 136 + . . scaffold1665 GLEAN mRNA 412979 414184 0.999661 - . ID=CGI_10015217; scaffold1665 GLEAN promoter 414185 415184 0.999661 - . ID=CGI_10015217; scaffold1665 GLEAN mRNA 414201 417723 0.990268 - . ID=CGI_10015218; scaffold1665 WUBlastX LINE_I 415348 415659 32 + . . scaffold1665 WUBlastX LINE_CR1-L2 415411 415866 62 + . . scaffold1665 WUBlastX LINE_RTE-X 415513 415872 123 + . . scaffold1665 WUBlastX LINE_RTE-X 415713 416366 210 + . . scaffold1665 WUBlastX LINE_RTE-X 416347 416649 145 + . . scaffold1665 WUBlastX LINE_RTE-X 416599 416772 59 + . . scaffold1665 GLEAN promoter 417724 418723 0.990268 - . ID=CGI_10015218; scaffold1665 GLEAN mRNA 418728 419186 0.981138 - . ID=CGI_10015219; scaffold1665 GLEAN promoter 419187 420186 0.981138 - . ID=CGI_10015219; scaffold1665 WUBlastX LINE_RTE-BovB 421190 421261 26 + . . scaffold1665 WUBlastX LINE_RTE-X 421640 421759 61 + . . scaffold1665 WUBlastX LINE_RTE-X 421761 422432 137 + . . scaffold1665 WUBlastX LINE_RTE-X 422386 423345 132 + . . scaffold1666 GLEAN promoter 593 1592 0.773648 + . ID=CGI_10000521; scaffold1666 GLEAN mRNA 1593 3788 0.773648 + . ID=CGI_10000521; scaffold1667 GLEAN mRNA 167 7611 0.72729 - . ID=CGI_10000609; scaffold1667 GLEAN promoter 7612 7624 0.72729 - . ID=CGI_10000609; scaffold1669 GLEAN mRNA 1110 11588 0.999673 - . ID=CGI_10001412; scaffold1669 WUBlastX DNA_Kolobok 9502 9792 111 + . . scaffold1669 WUBlastX DNA_Kolobok 9876 9923 40 + . . scaffold1669 GLEAN promoter 11589 12588 0.999673 - . ID=CGI_10001412; scaffold1669 WUBlastX DNA_En-Spm 13788 14624 160 + . . scaffold1669 WUBlastX DNA_En-Spm 14623 14808 133 + . . scaffold1669 WUBlastX DNA_En-Spm 14623 14961 131 + . . scaffold1669 GLEAN promoter 16620 17619 0.999372 + . ID=CGI_10001413; scaffold1669 GLEAN mRNA 17620 17835 0.999372 + . ID=CGI_10001413; scaffold1669 WUBlastX LTR_Copia 20517 20645 22 - . . scaffold1669 WUBlastX LTR_Gypsy 20568 21743 749 - . . scaffold1669 WUBlastX LTR_Gypsy 21668 22234 246 - . . scaffold1670 GLEAN promoter 3951 4950 0.990244 + . ID=CGI_10017594; scaffold1670 GLEAN mRNA 4951 6019 0.990244 + . ID=CGI_10017594; scaffold1670 TRF Tandem_Repeat 11143 11178 54 + . . scaffold1670 TRF Tandem_Repeat 12548 12581 52 + . . scaffold1670 GLEAN promoter 19416 20415 0.542324 + . ID=CGI_10017595; scaffold1670 GLEAN mRNA 20416 44429 0.542324 + . ID=CGI_10017595; scaffold1670 TRF Tandem_Repeat 31530 31573 88 + . . scaffold1670 WUBlastX LINE_R2-Hero 35276 35425 22 - . . scaffold1670 WUBlastX LINE_R2-Hero 35467 35808 135 - . . scaffold1670 WUBlastX LINE_R2-Hero 36071 36199 34 - . . scaffold1670 TRF Tandem_Repeat 39543 39599 98 + . . scaffold1670 WUBlastX DNA_TcMar-Marin 44050 44184 46 - . . scaffold1670 TRF Tandem_Repeat 53254 53286 66 + . . scaffold1670 GLEAN promoter 53489 54488 0.999861 + . ID=CGI_10017596; scaffold1670 GLEAN mRNA 54489 61878 0.999861 + . ID=CGI_10017596; scaffold1670 GLEAN mRNA 68250 75227 1 - . ID=CGI_10017597; scaffold1670 TRF Tandem_Repeat 71098 71971 1429 + . . scaffold1670 GLEAN promoter 75228 76227 1 - . ID=CGI_10017597; scaffold1670 GLEAN mRNA 76397 86392 0.777737 - . ID=CGI_10017598; scaffold1670 GLEAN promoter 86393 87392 0.777737 - . ID=CGI_10017598; scaffold1670 GLEAN promoter 90998 91997 0.998501 + . ID=CGI_10017599; scaffold1670 GLEAN mRNA 91998 93290 0.998501 + . ID=CGI_10017599; scaffold1670 TRF Tandem_Repeat 97388 97435 60 + . . scaffold1670 TRF Tandem_Repeat 97391 97435 81 + . . scaffold1670 GLEAN mRNA 98061 103306 1 - . ID=CGI_10017600; scaffold1670 GLEAN promoter 103307 104306 1 - . ID=CGI_10017600; scaffold1670 TRF Tandem_Repeat 120292 120364 137 + . . scaffold1670 GLEAN promoter 124122 125121 1 + . ID=CGI_10017601; scaffold1670 WUBlastX LTR_DIRS 124978 125595 121 + . . scaffold1670 GLEAN mRNA 125122 125499 1 + . ID=CGI_10017601; scaffold1670 WUBlastX LTR_DIRS 125720 126049 126 + . . scaffold1670 WUBlastX LTR_DIRS 126031 127050 316 + . . scaffold1670 TRF Tandem_Repeat 136984 137023 80 + . . scaffold1670 GLEAN promoter 137248 138247 1 + . ID=CGI_10017602; scaffold1670 GLEAN mRNA 138248 140450 1 + . ID=CGI_10017602; scaffold1670 GLEAN mRNA 138323 150544 0.999378 - . ID=CGI_10017603; scaffold1670 TRF Tandem_Repeat 138913 139087 165 + . . scaffold1670 GLEAN promoter 150545 151544 0.999378 - . ID=CGI_10017603; scaffold1670 GLEAN mRNA 150870 175640 0.999639 - . ID=CGI_10017604; scaffold1670 TRF Tandem_Repeat 153446 153769 450 + . . scaffold1670 TRF Tandem_Repeat 169600 169655 112 + . . scaffold1670 TRF Tandem_Repeat 173970 174181 379 + . . scaffold1670 GLEAN promoter 175641 176640 0.999639 - . ID=CGI_10017604; scaffold1670 TRF Tandem_Repeat 176218 176257 57 + . . scaffold1670 TRF Tandem_Repeat 179155 179203 98 + . . scaffold1670 GLEAN mRNA 182293 184971 1 - . ID=CGI_10017605; scaffold1670 GLEAN promoter 184972 185971 1 - . ID=CGI_10017605; scaffold1670 GLEAN promoter 187554 188553 0.999922 + . ID=CGI_10017606; scaffold1670 GLEAN mRNA 188554 196080 0.999922 + . ID=CGI_10017606; scaffold1670 TRF Tandem_Repeat 188740 189016 242 + . . scaffold1670 TRF Tandem_Repeat 194247 194357 179 + . . scaffold1670 TRF Tandem_Repeat 194252 194331 56 + . . scaffold1670 TRF Tandem_Repeat 196789 197053 440 + . . scaffold1670 GLEAN promoter 211636 212635 0.981248 + . ID=CGI_10017607; scaffold1670 GLEAN mRNA 212636 215020 0.981248 + . ID=CGI_10017607; scaffold1670 TRF Tandem_Repeat 215907 215947 82 + . . scaffold1670 GLEAN mRNA 216127 224196 0.702384 - . ID=CGI_10017608; scaffold1670 TRF Tandem_Repeat 220764 220810 94 + . . scaffold1670 GLEAN promoter 224197 225196 0.702384 - . ID=CGI_10017608; scaffold1670 GLEAN mRNA 225811 226365 1 - . ID=CGI_10017609; scaffold1670 GLEAN promoter 226366 227365 1 - . ID=CGI_10017609; scaffold1670 WUBlastX LTR_Gypsy 226549 226629 26 - . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 226567 229578 1632 - . . scaffold1670 TRF Tandem_Repeat 231530 231876 606 + . . scaffold1670 TRF Tandem_Repeat 233350 233386 51 + . . scaffold1670 TRF Tandem_Repeat 234916 234977 117 + . . scaffold1670 GLEAN promoter 247991 248990 0.949717 + . ID=CGI_10017610; scaffold1670 GLEAN mRNA 248991 268997 0.949717 + . ID=CGI_10017610; scaffold1670 TRF Tandem_Repeat 262253 262327 143 + . . scaffold1670 TRF Tandem_Repeat 267796 267887 57 + . . scaffold1670 TRF Tandem_Repeat 267796 267852 59 + . . scaffold1670 GLEAN mRNA 272470 277727 1 - . ID=CGI_10017611; scaffold1670 GLEAN promoter 277728 278727 1 - . ID=CGI_10017611; scaffold1670 GLEAN promoter 279242 280241 0.988958 + . ID=CGI_10017612; scaffold1670 GLEAN mRNA 280242 281670 0.988958 + . ID=CGI_10017612; scaffold1670 TRF Tandem_Repeat 280547 280591 90 + . . scaffold1670 GLEAN mRNA 285011 292494 0.999186 - . ID=CGI_10017613; scaffold1670 TRF Tandem_Repeat 288959 290358 1706 + . . scaffold1670 TRF Tandem_Repeat 288959 290358 1578 + . . scaffold1670 GLEAN promoter 292055 293054 1 + . ID=CGI_10017614; scaffold1670 GLEAN promoter 292495 293494 0.999186 - . ID=CGI_10017613; scaffold1670 GLEAN mRNA 293055 297540 1 + . ID=CGI_10017614; scaffold1670 GLEAN mRNA 300672 304503 1 - . ID=CGI_10017615; scaffold1670 GLEAN promoter 303656 304655 0.999949 + . ID=CGI_10017616; scaffold1670 GLEAN promoter 304504 305503 1 - . ID=CGI_10017615; scaffold1670 GLEAN mRNA 304656 310189 0.999949 + . ID=CGI_10017616; scaffold1670 GLEAN promoter 311132 312131 1 + . ID=CGI_10017617; scaffold1670 GLEAN mRNA 312132 315534 1 + . ID=CGI_10017617; scaffold1670 GLEAN promoter 314570 315569 0.999676 + . ID=CGI_10017618; scaffold1670 GLEAN mRNA 315570 334176 0.999676 + . ID=CGI_10017618; scaffold1670 WUBlastX LTR_Ngaro 317163 317936 112 - . . scaffold1670 WUBlastX LTR_Ngaro 317322 318041 243 - . . scaffold1670 TRF Tandem_Repeat 319762 320143 516 + . . scaffold1670 TRF Tandem_Repeat 320818 321224 445 + . . scaffold1670 TRF Tandem_Repeat 320818 321224 451 + . . scaffold1670 TRF Tandem_Repeat 320818 321224 445 + . . scaffold1670 TRF Tandem_Repeat 321012 321072 54 + . . scaffold1670 TRF Tandem_Repeat 321562 321670 101 + . . scaffold1670 TRF Tandem_Repeat 321577 321670 134 + . . scaffold1670 TRF Tandem_Repeat 322421 322531 71 + . . scaffold1670 GLEAN promoter 338824 339823 0.998698 + . ID=CGI_10017619; scaffold1670 WUBlastX LINE_RTE-X 339303 339560 66 - . . scaffold1670 WUBlastX LINE_RTE-X 339342 339560 90 - . . scaffold1670 GLEAN mRNA 339824 354391 0.998698 + . ID=CGI_10017619; scaffold1670 GLEAN mRNA 355659 357525 1 - . ID=CGI_10017620; scaffold1670 GLEAN promoter 357526 358525 1 - . ID=CGI_10017620; scaffold1670 GLEAN promoter 360879 361878 1 + . ID=CGI_10017621; scaffold1670 GLEAN mRNA 361879 364719 1 + . ID=CGI_10017621; scaffold1670 TRF Tandem_Repeat 367750 367898 235 + . . scaffold1670 GLEAN mRNA 371521 377943 0.996819 - . ID=CGI_10017622; scaffold1670 GLEAN promoter 377944 378943 0.996819 - . ID=CGI_10017622; scaffold1670 GLEAN promoter 380556 381555 1 + . ID=CGI_10017624; scaffold1670 GLEAN mRNA 381451 410223 0.441452 - . ID=CGI_10017623; scaffold1670 GLEAN mRNA 381556 392432 1 + . ID=CGI_10017624; scaffold1670 TRF Tandem_Repeat 387339 387399 95 + . . scaffold1670 WUBlastX LINE_CR1 398265 398594 89 + . . scaffold1670 WUBlastX LINE_CR1 398454 398639 29 + . . scaffold1670 WUBlastX LINE_Jockey 398651 399004 69 + . . scaffold1670 WUBlastX LINE_CR1 398726 399004 219 + . . scaffold1670 WUBlastX LINE_CR1 398753 399064 133 + . . scaffold1670 WUBlastX LINE_CR1 398765 399175 104 + . . scaffold1670 WUBlastX LINE_CR1 399043 399291 60 + . . scaffold1670 WUBlastX LINE_CR1 399064 399243 84 + . . scaffold1670 WUBlastX LINE_CR1 399215 399331 30 + . . scaffold1670 WUBlastX LINE_L2 399500 399838 44 + . . scaffold1670 WUBlastX LINE_CR1 399593 399832 62 + . . scaffold1670 WUBlastX LINE_CR1 399647 399868 103 + . . scaffold1670 WUBlastX LINE_CR1 399838 399957 46 + . . scaffold1670 WUBlastX LINE_CR1 404065 404610 160 + . . scaffold1670 WUBlastX LINE_CR1 404146 404607 205 + . . scaffold1670 WUBlastX LINE_RTE-X 406850 407188 80 + . . scaffold1670 GLEAN promoter 410224 411223 0.441452 - . ID=CGI_10017623; scaffold1670 GLEAN promoter 412073 413072 0.999971 + . ID=CGI_10017625; scaffold1670 GLEAN mRNA 413073 413540 0.999971 + . ID=CGI_10017625; scaffold1670 WUBlastX LINE_RTE-X 417625 417867 97 + . . scaffold1670 WUBlastX LINE_RTE-X 417691 417858 106 + . . scaffold1670 WUBlastX LINE_RTE-X 417703 417954 99 + . . scaffold1670 WUBlastX DNA_Helitron 431834 432319 136 - . . scaffold1670 GLEAN mRNA 433134 433475 0.376111 - . ID=CGI_10017626; scaffold1670 GLEAN promoter 433476 434475 0.376111 - . ID=CGI_10017626; scaffold1670 WUBlastX LTR_Gypsy 441100 441558 53 - . . scaffold1670 WUBlastX LTR_Gypsy 441223 441558 72 - . . scaffold1670 WUBlastX LTR_Gypsy 441563 441766 140 - . . scaffold1670 GLEAN promoter 447842 448841 0.99939 + . ID=CGI_10017627; scaffold1670 GLEAN mRNA 448842 475285 0.99939 + . ID=CGI_10017627; scaffold1670 WUBlastX LTR_Gypsy 456390 456971 63 + . . scaffold1670 WUBlastX LTR_DIRS 456522 456908 102 + . . scaffold1670 WUBlastX LTR_DIRS 456582 457040 141 + . . scaffold1670 WUBlastX LTR_DIRS 456585 456908 152 + . . scaffold1670 WUBlastX LTR_DIRS 456913 457107 29 + . . scaffold1670 TRF Tandem_Repeat 461217 462018 981 + . . scaffold1670 WUBlastX LINE_L1-Tx1 463633 464223 102 - . . scaffold1670 WUBlastX LINE_L1 463663 465120 22 - . . scaffold1670 WUBlastX LINE_L1-Tx1 464461 465078 139 - . . scaffold1670 WUBlastX LINE_L1-Tx1 464476 465363 133 - . . scaffold1670 WUBlastX LINE_L1-Tx1 464680 465027 150 - . . scaffold1670 WUBlastX LINE_L1-Tx1 465338 465586 135 - . . scaffold1670 WUBlastX LINE_L1-Tx1 465350 465709 72 - . . scaffold1670 WUBlastX LINE_L1 465359 465640 108 - . . scaffold1670 TRF Tandem_Repeat 468648 468711 83 + . . scaffold1670 TRF Tandem_Repeat 480573 481517 1329 + . . scaffold1670 TRF Tandem_Repeat 485482 485575 53 + . . scaffold1670 TRF Tandem_Repeat 486305 486340 72 + . . scaffold1670 GLEAN promoter 486777 487776 0.999087 + . ID=CGI_10017628; scaffold1670 TRF Tandem_Repeat 486854 486882 58 + . . scaffold1670 GLEAN mRNA 487777 490131 0.999087 + . ID=CGI_10017628; scaffold1670 TRF Tandem_Repeat 487903 488085 54 + . . scaffold1670 TRF Tandem_Repeat 491202 491576 535 + . . scaffold1670 WUBlastX DNA_En-Spm 493708 494280 359 + . . scaffold1670 WUBlastX DNA_En-Spm 494291 494440 77 + . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 497127 498959 303 - . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 497238 498572 544 - . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 498964 500013 930 - . . scaffold1670 WUBlastX LTR_Gypsy 499867 500040 54 - . . scaffold1670 WUBlastX LTR_Gypsy 504262 505047 38 - . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 504274 504438 47 - . . scaffold1670 WUBlastX LTR_Gypsy 504289 504660 43 - . . scaffold1670 WUBlastX LTR_Gypsy 504911 505297 20 - . . scaffold1670 WUBlastX LTR_Gypsy 504986 505216 38 - . . scaffold1670 WUBlastX LTR_Gypsy 505351 506181 51 - . . scaffold1670 WUBlastX LTR_Gypsy-Cigr 505594 506205 130 - . . scaffold1670 WUBlastX DNA_En-Spm 507910 508857 602 + . . scaffold1670 WUBlastX DNA_Harbinger 509316 509477 80 + . . scaffold1670 WUBlastX LTR_DIRS 511523 512446 193 + . . scaffold1670 WUBlastX LTR_DIRS 512018 512473 218 + . . scaffold1670 WUBlastX LTR_DIRS 512538 512936 198 + . . scaffold1670 WUBlastX LTR_DIRS 512646 513005 44 + . . scaffold1670 WUBlastX LTR_DIRS 512923 513024 23 + . . scaffold1671 WUBlastX RC_Helitron 4159 4872 22 + . . scaffold1671 WUBlastX LTR_Pao 9301 9405 21 + . . scaffold1671 WUBlastX LTR_Pao 9319 9405 35 + . . scaffold1671 WUBlastX LTR_Pao 9405 9488 66 + . . scaffold1671 WUBlastX DNA_Merlin 12776 12934 34 + . . scaffold1671 WUBlastX DNA_Merlin 13081 13284 121 + . . scaffold1671 TRF Tandem_Repeat 20446 20482 74 + . . scaffold1671 TRF Tandem_Repeat 21197 21237 55 + . . scaffold1671 TRF Tandem_Repeat 25411 25467 78 + . . scaffold1671 TRF Tandem_Repeat 27658 27702 67 + . . scaffold1671 WUBlastX LINE_L1 42080 42127 23 + . . scaffold1671 WUBlastX LINE_L1 42309 42425 28 + . . scaffold1671 WUBlastX LINE_L1-Tx1 42339 42428 30 + . . scaffold1671 WUBlastX LINE_L1-Tx1 42357 42428 42 + . . scaffold1671 WUBlastX LINE_L1 42372 42443 59 + . . scaffold1671 WUBlastX LINE_L1 42372 42464 47 + . . scaffold1671 TRF Tandem_Repeat 42474 42561 104 + . . scaffold1671 TRF Tandem_Repeat 42483 42570 75 + . . scaffold1671 WUBlastX LINE_L1-Tx1 42882 43628 104 + . . scaffold1671 WUBlastX LINE_L1-Tx1 43044 43613 174 + . . scaffold1671 WUBlastX LINE_L1 44447 44674 21 + . . scaffold1671 WUBlastX LINE_L1 44459 44554 22 + . . scaffold1671 WUBlastX LTR_Pao 45347 45619 188 - . . scaffold1671 WUBlastX LTR_Pao 45618 46298 25 - . . scaffold1671 WUBlastX LTR_Pao 45876 46427 72 - . . scaffold1671 GLEAN promoter 46958 47957 0.998077 + . ID=CGI_10015136; scaffold1671 GLEAN mRNA 47958 55887 0.998077 + . ID=CGI_10015136; scaffold1671 WUBlastX LINE_CR1 50590 50838 85 - . . scaffold1671 TRF Tandem_Repeat 52884 52945 115 + . . scaffold1671 WUBlastX DNA_TcMar-Marin 58530 58613 46 - . . scaffold1671 WUBlastX DNA_TcMar-Marin 58620 58748 35 - . . scaffold1671 TRF Tandem_Repeat 65299 65342 61 + . . scaffold1671 WUBlastX DNA_TcMar-Marin 65741 65809 34 - . . scaffold1671 WUBlastX DNA_TcMar-Marin 65756 65812 37 - . . scaffold1671 WUBlastX DNA_TcMar-Marin 65822 65995 68 - . . scaffold1671 WUBlastX LINE_CR1 73373 73591 32 - . . scaffold1671 WUBlastX LINE_Penelope 89779 90312 38 - . . scaffold1671 WUBlastX LINE_Penelope 89884 90171 43 - . . scaffold1671 TRF Tandem_Repeat 91055 91081 54 + . . scaffold1671 TRF Tandem_Repeat 94513 94569 69 + . . scaffold1671 TRF Tandem_Repeat 97080 97132 52 + . . scaffold1671 GLEAN promoter 98304 99303 0.499635 + . ID=CGI_10015137; scaffold1671 GLEAN mRNA 99304 99930 0.499635 + . ID=CGI_10015137; scaffold1671 WUBlastX LINE_Telomeric 103993 104394 24 + . . scaffold1671 WUBlastX LINE_L2 104056 104409 81 + . . scaffold1671 WUBlastX LINE_L2 104113 104403 191 + . . scaffold1671 WUBlastX LINE_L2 104409 105521 163 + . . scaffold1671 WUBlastX LINE_L2 104412 105161 325 + . . scaffold1671 WUBlastX LTR_Pao 106561 107004 39 + . . scaffold1671 WUBlastX LTR_Pao 106630 108672 824 + . . scaffold1671 WUBlastX LTR_Pao 107257 108954 101 + . . scaffold1671 WUBlastX LTR_Pao 109462 109548 27 + . . scaffold1671 WUBlastX LTR_Pao 109504 109608 26 + . . scaffold1671 WUBlastX LTR_Pao 110873 111346 261 + . . scaffold1671 WUBlastX LTR_Pao 111306 111695 30 + . . scaffold1671 WUBlastX LTR_Pao 111312 111530 132 + . . scaffold1671 WUBlastX LTR_Pao 111312 111614 127 + . . scaffold1671 WUBlastX LTR_Pao 111750 112241 138 + . . scaffold1671 WUBlastX LTR_Pao 111960 112370 176 + . . scaffold1671 WUBlastX LTR_Pao 111999 112250 263 + . . scaffold1671 WUBlastX LTR_Pao 112286 112900 578 + . . scaffold1671 GLEAN mRNA 126700 150687 0.998892 - . ID=CGI_10015138; scaffold1671 TRF Tandem_Repeat 146136 146852 769 + . . scaffold1671 TRF Tandem_Repeat 149490 149560 142 + . . scaffold1671 TRF Tandem_Repeat 149833 149943 129 + . . scaffold1671 TRF Tandem_Repeat 149833 149943 102 + . . scaffold1671 GLEAN promoter 150688 151687 0.998892 - . ID=CGI_10015138; scaffold1671 TRF Tandem_Repeat 151089 151171 166 + . . scaffold1671 WUBlastX LINE_L1-Tx1 152541 152927 37 - . . scaffold1671 WUBlastX LINE_L1 153684 153770 21 - . . scaffold1671 WUBlastX LINE_L1-Tx1 153884 154519 53 - . . scaffold1671 WUBlastX LINE_L1-Tx1 153983 154510 93 - . . scaffold1671 WUBlastX LINE_L1-Tx1 154513 155805 657 - . . scaffold1671 WUBlastX LINE_L1 155323 155901 114 - . . scaffold1671 WUBlastX LINE_L1-Tx1 155913 156713 163 - . . scaffold1671 WUBlastX LINE_L1-Tx1 156625 157083 142 - . . scaffold1671 WUBlastX LINE_L1 156643 157014 185 - . . scaffold1671 GLEAN mRNA 157130 157648 0.999984 - . ID=CGI_10015139; scaffold1671 GLEAN promoter 157649 158648 0.999984 - . ID=CGI_10015139; scaffold1671 WUBlastX LINE_L1-Tx1 157782 158402 52 + . . scaffold1671 WUBlastX LINE_CR1 157893 158405 95 + . . scaffold1671 GLEAN mRNA 163025 167836 0.730546 - . ID=CGI_10015140; scaffold1671 GLEAN promoter 167837 168836 0.730546 - . ID=CGI_10015140; scaffold1671 TRF Tandem_Repeat 170173 170726 917 + . . scaffold1671 TRF Tandem_Repeat 174203 174246 70 + . . scaffold1671 GLEAN mRNA 176131 177786 0.999661 - . ID=CGI_10015142; scaffold1671 GLEAN promoter 177787 178786 0.999661 - . ID=CGI_10015142; scaffold1671 GLEAN mRNA 178429 200164 0.999618 - . ID=CGI_10015143; scaffold1671 TRF Tandem_Repeat 179979 180027 98 + . . scaffold1671 TRF Tandem_Repeat 184226 184259 59 + . . scaffold1671 TRF Tandem_Repeat 184851 184931 101 + . . scaffold1671 TRF Tandem_Repeat 185395 185689 283 + . . scaffold1671 TRF Tandem_Repeat 185395 185672 272 + . . scaffold1671 TRF Tandem_Repeat 185395 185673 263 + . . scaffold1671 TRF Tandem_Repeat 186341 186378 51 + . . scaffold1671 TRF Tandem_Repeat 189134 189869 1062 + . . scaffold1671 TRF Tandem_Repeat 191124 191411 418 + . . scaffold1671 TRF Tandem_Repeat 193614 194022 336 + . . scaffold1671 TRF Tandem_Repeat 193614 193791 148 + . . scaffold1671 TRF Tandem_Repeat 193621 194020 193 + . . scaffold1671 TRF Tandem_Repeat 196255 196542 441 + . . scaffold1671 TRF Tandem_Repeat 198274 198742 250 + . . scaffold1671 TRF Tandem_Repeat 198274 198733 361 + . . scaffold1671 TRF Tandem_Repeat 198279 198735 328 + . . scaffold1671 GLEAN promoter 200165 201164 0.999618 - . ID=CGI_10015143; scaffold1671 GLEAN mRNA 203257 214336 0.999995 - . ID=CGI_10015144; scaffold1671 TRF Tandem_Repeat 204391 204424 61 + . . scaffold1671 TRF Tandem_Repeat 205482 205517 72 + . . scaffold1671 GLEAN promoter 213898 214897 0.999676 + . ID=CGI_10015145; scaffold1671 GLEAN promoter 214337 215336 0.999995 - . ID=CGI_10015144; scaffold1671 GLEAN mRNA 214898 217336 0.999676 + . ID=CGI_10015145; scaffold1671 GLEAN mRNA 219028 220537 0.999946 - . ID=CGI_10015146; scaffold1671 GLEAN promoter 220124 221123 0.633477 + . ID=CGI_10015147; scaffold1671 GLEAN promoter 220538 221537 0.999946 - . ID=CGI_10015146; scaffold1671 GLEAN mRNA 221124 227498 0.633477 + . ID=CGI_10015147; scaffold1671 WUBlastX RC_Helitron 221442 221831 29 + . . scaffold1671 WUBlastX RC_Helitron 221739 221831 32 + . . scaffold1671 WUBlastX RC_Helitron 221760 221864 21 + . . scaffold1671 WUBlastX RC_Helitron 222168 222251 22 + . . scaffold1671 WUBlastX RC_Helitron 222780 222869 26 + . . scaffold1671 WUBlastX RC_Helitron 222783 222857 36 + . . scaffold1671 WUBlastX RC_Helitron 222795 222857 37 + . . scaffold1671 WUBlastX RC_Helitron 226405 226494 36 + . . scaffold1671 WUBlastX RC_Helitron 226429 226560 28 + . . scaffold1671 WUBlastX RC_Helitron 226874 227017 42 + . . scaffold1671 WUBlastX RC_Helitron 227283 227456 98 + . . scaffold1671 WUBlastX RC_Helitron 227283 227429 108 + . . scaffold1671 GLEAN mRNA 228085 230368 0.999977 - . ID=CGI_10015148; scaffold1671 GLEAN promoter 230369 231368 0.999977 - . ID=CGI_10015148; scaffold1671 TRF Tandem_Repeat 231100 231295 148 + . . scaffold1671 TRF Tandem_Repeat 231297 231585 232 + . . scaffold1671 TRF Tandem_Repeat 231300 231560 334 + . . scaffold1671 TRF Tandem_Repeat 233526 233601 152 + . . scaffold1671 GLEAN promoter 234013 235012 0.99883 + . ID=CGI_10015149; scaffold1671 TRF Tandem_Repeat 234052 234083 64 + . . scaffold1671 GLEAN mRNA 235013 243313 0.99883 + . ID=CGI_10015149; scaffold1671 TRF Tandem_Repeat 244343 245478 1749 + . . scaffold1671 TRF Tandem_Repeat 245509 245560 50 + . . scaffold1671 GLEAN mRNA 246040 251132 0.999076 - . ID=CGI_10015150; scaffold1671 GLEAN promoter 251133 252132 0.999076 - . ID=CGI_10015150; scaffold1671 GLEAN promoter 251552 252551 0.999676 + . ID=CGI_10015151; scaffold1671 GLEAN mRNA 252552 256664 0.999676 + . ID=CGI_10015151; scaffold1671 GLEAN promoter 268559 269558 1 + . ID=CGI_10015152; scaffold1671 GLEAN mRNA 269559 275725 1 + . ID=CGI_10015152; scaffold1671 TRF Tandem_Repeat 283713 283753 82 + . . scaffold1671 TRF Tandem_Repeat 286368 286518 275 + . . scaffold1671 GLEAN promoter 287810 288809 0.09114 + . ID=CGI_10015153; scaffold1671 GLEAN mRNA 288810 302318 0.09114 + . ID=CGI_10015153; scaffold1671 TRF Tandem_Repeat 299671 299715 90 + . . scaffold1671 TRF Tandem_Repeat 301651 301734 57 + . . scaffold1671 GLEAN promoter 302116 303115 0.243132 + . ID=CGI_10015154; scaffold1671 GLEAN mRNA 303116 311549 0.243132 + . ID=CGI_10015154; scaffold1671 TRF Tandem_Repeat 308615 308817 174 + . . scaffold1671 TRF Tandem_Repeat 308929 309015 104 + . . scaffold1671 WUBlastX LINE_RTE-BovB 310559 311035 93 - . . scaffold1671 WUBlastX LINE_RTE-BovB 310661 311083 170 - . . scaffold1671 WUBlastX LINE_RTE-BovB 311049 311414 240 - . . scaffold1671 WUBlastX LINE_RTE-BovB 311070 311555 45 - . . scaffold1671 WUBlastX LINE_RTE-BovB 311154 311468 97 - . . scaffold1671 TRF Tandem_Repeat 315902 315939 51 + . . scaffold1671 GLEAN promoter 316949 317948 0.991247 + . ID=CGI_10015155; scaffold1671 GLEAN mRNA 317949 336555 0.991247 + . ID=CGI_10015155; scaffold1671 TRF Tandem_Repeat 329723 329837 176 + . . scaffold1671 TRF Tandem_Repeat 330302 330467 255 + . . scaffold1671 TRF Tandem_Repeat 331012 331315 263 + . . scaffold1671 TRF Tandem_Repeat 335264 336288 1638 + . . scaffold1671 GLEAN promoter 338960 339959 0.693652 + . ID=CGI_10015156; scaffold1671 GLEAN mRNA 339960 359536 0.693652 + . ID=CGI_10015156; scaffold1671 TRF Tandem_Repeat 347913 347975 117 + . . scaffold1671 TRF Tandem_Repeat 348986 349025 80 + . . scaffold1671 TRF Tandem_Repeat 354356 356033 1832 + . . scaffold1671 TRF Tandem_Repeat 354356 356033 1802 + . . scaffold1671 TRF Tandem_Repeat 354456 356033 1804 + . . scaffold1671 TRF Tandem_Repeat 358706 358766 72 + . . scaffold1671 WUBlastX LTR_Ngaro 361130 361270 25 + . . scaffold1671 WUBlastX LTR_Ngaro 361266 361346 34 + . . scaffold1671 TRF Tandem_Repeat 363490 363527 67 + . . scaffold1671 WUBlastX LTR_DIRS 381454 382422 354 - . . scaffold1671 WUBlastX LTR_Gypsy 382264 382473 22 - . . scaffold1671 WUBlastX LTR_Gypsy 382863 383033 25 - . . scaffold1671 GLEAN mRNA 384061 387810 0.999617 - . ID=CGI_10015157; scaffold1671 WUBlastX DNA_Sola 384091 384177 22 - . . scaffold1671 WUBlastX DNA_Sola 384603 384824 60 - . . scaffold1671 WUBlastX DNA_Sola 387394 387996 30 - . . scaffold1671 GLEAN promoter 387811 388810 0.999617 - . ID=CGI_10015157; scaffold1671 TRF Tandem_Repeat 401754 401804 102 + . . scaffold1671 GLEAN mRNA 403383 409565 1 - . ID=CGI_10015158; scaffold1671 TRF Tandem_Repeat 409479 409539 122 + . . scaffold1671 GLEAN promoter 409566 410565 1 - . ID=CGI_10015158; scaffold1671 TRF Tandem_Repeat 410201 410239 69 + . . scaffold1671 GLEAN promoter 410663 411662 0.51142 + . ID=CGI_10015159; scaffold1671 GLEAN mRNA 411663 422714 0.51142 + . ID=CGI_10015159; scaffold1671 WUBlastX LINE_RTE-BovB 412934 413638 403 + . . scaffold1671 WUBlastX LINE_RTE-BovB 412934 413908 225 + . . scaffold1671 WUBlastX LINE_RTE-BovB 413640 413975 204 + . . scaffold1671 TRF Tandem_Repeat 420404 420452 73 + . . scaffold1672 TRF Tandem_Repeat 1432 1495 121 + . . scaffold1672 TRF Tandem_Repeat 2511 2592 68 + . . scaffold1672 GLEAN mRNA 36445 51606 0.889783 - . ID=CGI_10004940; scaffold1672 TRF Tandem_Repeat 36927 36957 53 + . . scaffold1672 GLEAN promoter 51607 52606 0.889783 - . ID=CGI_10004940; scaffold1672 GLEAN promoter 52382 53381 1 + . ID=CGI_10004941; scaffold1672 TRF Tandem_Repeat 53151 53204 108 + . . scaffold1672 GLEAN mRNA 53382 56020 1 + . ID=CGI_10004941; scaffold1672 TRF Tandem_Repeat 54259 54297 78 + . . scaffold1672 GLEAN promoter 56333 57332 0.999231 + . ID=CGI_10004942; scaffold1672 GLEAN mRNA 57333 81461 0.999231 + . ID=CGI_10004942; scaffold1672 WUBlastX LTR_Gypsy 57713 57772 20 + . . scaffold1672 WUBlastX LTR_DIRS 57963 60122 382 + . . scaffold1672 WUBlastX LTR_DIRS 58431 60407 1331 + . . scaffold1672 WUBlastX LTR_DIRS 60296 61171 550 + . . scaffold1672 TRF Tandem_Repeat 64848 64921 148 + . . scaffold1672 TRF Tandem_Repeat 67362 67430 129 + . . scaffold1672 TRF Tandem_Repeat 71589 71906 591 + . . scaffold1672 TRF Tandem_Repeat 71901 72163 438 + . . scaffold1672 GLEAN mRNA 76156 80299 1 - . ID=CGI_10004943; scaffold1672 WUBlastX LTR_Gypsy 77310 77585 31 + . . scaffold1672 TRF Tandem_Repeat 79070 79114 90 + . . scaffold1672 GLEAN promoter 80300 81299 1 - . ID=CGI_10004943; scaffold1672 WUBlastX LTR_Gypsy 81219 81452 54 + . . scaffold1672 GLEAN mRNA 82119 85192 1 - . ID=CGI_10004944; scaffold1672 GLEAN promoter 85193 86192 1 - . ID=CGI_10004944; scaffold1672 GLEAN mRNA 86437 89594 0.702295 - . ID=CGI_10004945; scaffold1672 GLEAN promoter 89595 90594 0.702295 - . ID=CGI_10004945; scaffold1672 TRF Tandem_Repeat 89813 89866 51 + . . scaffold1672 TRF Tandem_Repeat 90611 90684 50 + . . scaffold1672 TRF Tandem_Repeat 92593 92644 104 + . . scaffold1672 GLEAN promoter 95088 96087 0.784678 + . ID=CGI_10004946; scaffold1672 GLEAN mRNA 96088 97613 0.784678 + . ID=CGI_10004946; scaffold1672 GLEAN mRNA 99438 100105 0.777738 - . ID=CGI_10004947; scaffold1672 GLEAN promoter 100106 101105 0.777738 - . ID=CGI_10004947; scaffold1672 GLEAN mRNA 102202 113217 0.9998 - . ID=CGI_10004948; scaffold1672 GLEAN promoter 113218 114217 0.9998 - . ID=CGI_10004948; scaffold1673 GLEAN mRNA 726 31015 0.998009 - . ID=CGI_10013565; scaffold1673 GLEAN promoter 3560 4559 1 + . ID=CGI_10013566; scaffold1673 GLEAN mRNA 4560 13458 1 + . ID=CGI_10013566; scaffold1673 TRF Tandem_Repeat 11876 11993 155 + . . scaffold1673 TRF Tandem_Repeat 17559 17717 126 + . . scaffold1673 TRF Tandem_Repeat 25937 26085 282 + . . scaffold1673 TRF Tandem_Repeat 27336 27749 533 + . . scaffold1673 TRF Tandem_Repeat 29808 29862 110 + . . scaffold1673 GLEAN promoter 30438 31437 0.99967 + . ID=CGI_10013567; scaffold1673 GLEAN promoter 31016 32015 0.998009 - . ID=CGI_10013565; scaffold1673 GLEAN mRNA 31438 36790 0.99967 + . ID=CGI_10013567; scaffold1673 GLEAN promoter 37300 38299 1 + . ID=CGI_10013568; scaffold1673 GLEAN mRNA 38300 42089 1 + . ID=CGI_10013568; scaffold1673 GLEAN mRNA 45020 50018 0.681651 - . ID=CGI_10013569; scaffold1673 GLEAN promoter 50019 51018 0.681651 - . ID=CGI_10013569; scaffold1673 GLEAN mRNA 51832 54257 0.720264 - . ID=CGI_10013570; scaffold1673 WUBlastX LTR_Gypsy 52838 53119 94 - . . scaffold1673 WUBlastX LTR_Gypsy-Cigr 52922 53119 125 - . . scaffold1673 WUBlastX LTR_Gypsy 52988 53125 131 - . . scaffold1673 WUBlastX LTR_Gypsy-Cigr 53688 54020 89 - . . scaffold1673 GLEAN promoter 54258 55257 0.720264 - . ID=CGI_10013570; scaffold1673 GLEAN promoter 57935 58934 0.828275 + . ID=CGI_10013571; scaffold1673 WUBlastX DNA_TcMar-Marin 58633 58872 82 + . . scaffold1673 GLEAN mRNA 58935 108305 0.828275 + . ID=CGI_10013571; scaffold1673 TRF Tandem_Repeat 75176 75231 60 + . . scaffold1673 TRF Tandem_Repeat 75179 75234 53 + . . scaffold1673 TRF Tandem_Repeat 79735 79779 63 + . . scaffold1673 WUBlastX LTR_Ngaro 87262 87378 72 - . . scaffold1673 WUBlastX LINE_L1 99037 99915 64 + . . scaffold1673 WUBlastX LINE_L1-Tx1 99172 100023 477 + . . scaffold1673 WUBlastX LINE_L1-Tx1 100031 100969 158 + . . scaffold1673 TRF Tandem_Repeat 101114 101165 104 + . . scaffold1673 WUBlastX DNA_Crypton 103994 104674 223 + . . scaffold1673 TRF Tandem_Repeat 106454 106484 53 + . . scaffold1673 TRF Tandem_Repeat 111275 111349 114 + . . scaffold1673 TRF Tandem_Repeat 112898 112971 118 + . . scaffold1673 WUBlastX LINE_L2 113022 113717 77 + . . scaffold1673 WUBlastX LINE_L2 113169 113720 110 + . . scaffold1673 WUBlastX LINE_L1-Tx1 114065 114613 262 + . . scaffold1673 WUBlastX LINE_L1-Tx1 114561 114758 66 + . . scaffold1673 WUBlastX LINE_L1-Tx1 114615 114794 28 + . . scaffold1673 GLEAN mRNA 114952 122971 0.392699 - . ID=CGI_10013572; scaffold1673 TRF Tandem_Repeat 118030 118056 54 + . . scaffold1673 GLEAN promoter 122972 123971 0.392699 - . ID=CGI_10013572; scaffold1673 TRF Tandem_Repeat 126389 126467 149 + . . scaffold1673 TRF Tandem_Repeat 128378 128448 115 + . . scaffold1673 WUBlastX LINE_Penelope 138706 139446 183 - . . scaffold1673 WUBlastX LINE_Penelope 140290 140619 21 - . . scaffold1673 WUBlastX LINE_Penelope 140350 140661 90 - . . scaffold1673 WUBlastX LINE_Penelope 140634 141110 225 - . . scaffold1673 WUBlastX LINE_Penelope 141095 141460 39 - . . scaffold1673 WUBlastX LINE_Penelope 141140 141325 71 - . . scaffold1673 WUBlastX LINE_Penelope 141152 141406 59 - . . scaffold1673 TRF Tandem_Repeat 152768 152853 163 + . . scaffold1673 TRF Tandem_Repeat 156969 157054 120 + . . scaffold1673 TRF Tandem_Repeat 162925 163014 62 + . . scaffold1673 TRF Tandem_Repeat 162928 163016 72 + . . scaffold1673 TRF Tandem_Repeat 163317 163370 99 + . . scaffold1673 TRF Tandem_Repeat 164818 164883 123 + . . scaffold1673 GLEAN mRNA 167196 180789 0.361367 - . ID=CGI_10013573; scaffold1673 TRF Tandem_Repeat 170568 170601 50 + . . scaffold1673 TRF Tandem_Repeat 175175 175213 51 + . . scaffold1673 TRF Tandem_Repeat 175213 175252 80 + . . scaffold1673 GLEAN promoter 180790 181789 0.361367 - . ID=CGI_10013573; scaffold1673 WUBlastX LTR_Ngaro 196164 196262 35 + . . scaffold1673 WUBlastX LTR_Ngaro 196270 196362 44 + . . scaffold1673 WUBlastX LTR_Ngaro 196320 196529 20 + . . scaffold1673 WUBlastX LTR_Ngaro 196398 196529 35 + . . scaffold1673 WUBlastX LTR_Ngaro 196532 196729 89 + . . scaffold1673 WUBlastX LTR_Ngaro 196532 197155 25 + . . scaffold1673 WUBlastX LTR_Ngaro 196762 196947 57 + . . scaffold1673 WUBlastX LTR_Ngaro 197027 197170 47 + . . scaffold1673 WUBlastX LTR_Ngaro 197169 197333 40 + . . scaffold1673 TRF Tandem_Repeat 198243 198331 128 + . . scaffold1673 TRF Tandem_Repeat 204706 204755 50 + . . scaffold1673 TRF Tandem_Repeat 205572 205628 80 + . . scaffold1673 TRF Tandem_Repeat 216138 216166 58 + . . scaffold1673 TRF Tandem_Repeat 226163 226241 158 + . . scaffold1673 GLEAN mRNA 228342 237062 0.999027 - . ID=CGI_10013574; scaffold1673 TRF Tandem_Repeat 229668 230372 888 + . . scaffold1673 GLEAN promoter 236658 237657 1 + . ID=CGI_10013575; scaffold1673 GLEAN promoter 237063 238062 0.999027 - . ID=CGI_10013574; scaffold1673 GLEAN mRNA 237658 249188 1 + . ID=CGI_10013575; scaffold1673 TRF Tandem_Repeat 247905 248481 863 + . . scaffold1673 GLEAN promoter 251030 252029 1 + . ID=CGI_10013576; scaffold1673 GLEAN mRNA 252030 254876 1 + . ID=CGI_10013576; scaffold1673 GLEAN mRNA 257003 275064 0.999593 - . ID=CGI_10013577; scaffold1673 GLEAN promoter 275065 276064 0.999593 - . ID=CGI_10013577; scaffold1673 GLEAN promoter 278126 279125 1 + . ID=CGI_10013578; scaffold1673 GLEAN mRNA 279126 281607 1 + . ID=CGI_10013578; scaffold1673 WUBlastX LTR_Gypsy-Troyk 283010 283072 49 - . . scaffold1673 WUBlastX LTR_Gypsy-Troyk 283084 283281 25 - . . scaffold1673 WUBlastX LTR_Gypsy 283084 283176 55 - . . scaffold1673 WUBlastX LTR_Gypsy-Troyk 283260 283394 53 - . . scaffold1673 WUBlastX LINE_RTE-BovB 283504 283713 58 - . . scaffold1673 WUBlastX LINE_RTE-BovB 283719 283901 75 - . . scaffold1673 WUBlastX DNA_TcMar-Tc1 284512 284793 192 + . . scaffold1673 WUBlastX LINE_Penelope 300207 300377 67 + . . scaffold1673 WUBlastX LINE_Penelope 300228 300410 57 + . . scaffold1673 TRF Tandem_Repeat 303474 303531 98 + . . scaffold1673 WUBlastX LINE_L2 306128 306277 59 + . . scaffold1673 WUBlastX LINE_CR1 306173 306304 62 + . . scaffold1673 WUBlastX LINE_CR1-L2 306311 306592 58 + . . scaffold1673 WUBlastX LINE_L2 306428 306661 113 + . . scaffold1673 TRF Tandem_Repeat 308130 308319 233 + . . scaffold1673 TRF Tandem_Repeat 308136 308319 76 + . . scaffold1673 GLEAN mRNA 310510 313745 0.999675 - . ID=CGI_10013579; scaffold1673 TRF Tandem_Repeat 310616 310692 70 + . . scaffold1673 GLEAN promoter 313709 314708 0.999544 + . ID=CGI_10013580; scaffold1673 GLEAN promoter 313746 314745 0.999675 - . ID=CGI_10013579; scaffold1673 GLEAN mRNA 314709 330786 0.999544 + . ID=CGI_10013580; scaffold1673 TRF Tandem_Repeat 321501 321733 394 + . . scaffold1673 TRF Tandem_Repeat 321734 322190 702 + . . scaffold1673 TRF Tandem_Repeat 322192 322476 247 + . . scaffold1673 GLEAN promoter 331227 332226 0.811348 + . ID=CGI_10013581; scaffold1673 GLEAN mRNA 332227 347638 0.811348 + . ID=CGI_10013581; scaffold1673 GLEAN mRNA 335387 335599 0.999855 - . ID=CGI_10013582; scaffold1673 GLEAN promoter 335600 336599 0.999855 - . ID=CGI_10013582; scaffold1673 WUBlastX LINE_RTE-BovB 337559 337693 51 - . . scaffold1674 GLEAN promoter 1 4 1 + . ID=CGI_10000713; scaffold1674 GLEAN mRNA 5 748 1 + . ID=CGI_10000713; scaffold1674 TRF Tandem_Repeat 1079 1118 80 + . . scaffold1674 WUBlastX DNA_Maverick 8436 8966 102 + . . scaffold1674 WUBlastX DNA_Maverick 8475 8729 127 + . . scaffold1675 GLEAN mRNA 745 11817 0.679204 - . ID=CGI_10001288; scaffold1675 TRF Tandem_Repeat 7606 7665 84 + . . scaffold1675 TRF Tandem_Repeat 9187 9219 66 + . . scaffold1675 TRF Tandem_Repeat 9344 9400 114 + . . scaffold1675 WUBlastX LTR_DIRS 10126 10383 63 - . . scaffold1675 WUBlastX LTR_DIRS 10382 10864 58 - . . scaffold1675 WUBlastX LTR_DIRS 10391 10768 194 - . . scaffold1675 WUBlastX LTR_Gypsy 11081 11191 26 - . . scaffold1675 GLEAN promoter 11818 12817 0.679204 - . ID=CGI_10001288; scaffold1675 WUBlastX LINE_CR1-L2 15639 15950 60 + . . scaffold1676 TRF Tandem_Repeat 3792 3885 80 + . . scaffold1676 WUBlastX DNA_TcMar-Tc1 6585 6746 79 - . . scaffold1676 WUBlastX DNA_TcMar-Marin 11077 11934 63 - . . scaffold1676 WUBlastX DNA_TcMar-Tc1 11206 12102 477 - . . scaffold1676 WUBlastX DNA_TcMar-Tc1 11851 12165 35 - . . scaffold1676 TRF Tandem_Repeat 14293 14343 59 + . . scaffold1676 TRF Tandem_Repeat 19285 19351 89 + . . scaffold1676 TRF Tandem_Repeat 38697 38754 107 + . . scaffold1676 TRF Tandem_Repeat 39401 39430 51 + . . scaffold1677 WUBlastX LTR_Pao 10880 10930 30 - . . scaffold1677 WUBlastX LTR_Pao 10932 11066 61 - . . scaffold1678 GLEAN promoter 1 270 0.228184 + . ID=CGI_10010377; scaffold1678 TRF Tandem_Repeat 1 37 74 + . . scaffold1678 GLEAN mRNA 271 21370 0.228184 + . ID=CGI_10010377; scaffold1678 GLEAN mRNA 3883 18386 0.472128 - . ID=CGI_10010378; scaffold1678 TRF Tandem_Repeat 10367 10424 52 + . . scaffold1678 TRF Tandem_Repeat 12376 12548 310 + . . scaffold1678 GLEAN promoter 18387 19386 0.472128 - . ID=CGI_10010378; scaffold1678 GLEAN promoter 24348 25347 0.995329 + . ID=CGI_10010379; scaffold1678 GLEAN mRNA 25348 44463 0.995329 + . ID=CGI_10010379; scaffold1678 GLEAN mRNA 33169 37073 0.781982 - . ID=CGI_10010380; scaffold1678 TRF Tandem_Repeat 35023 35080 75 + . . scaffold1678 GLEAN promoter 37074 38073 0.781982 - . ID=CGI_10010380; scaffold1678 TRF Tandem_Repeat 41110 41150 82 + . . scaffold1678 TRF Tandem_Repeat 41819 41867 98 + . . scaffold1678 TRF Tandem_Repeat 45217 45279 126 + . . scaffold1678 GLEAN promoter 51645 52644 0.989782 + . ID=CGI_10010381; scaffold1678 TRF Tandem_Repeat 52194 52241 96 + . . scaffold1678 TRF Tandem_Repeat 52452 52491 80 + . . scaffold1678 GLEAN mRNA 52645 65240 0.989782 + . ID=CGI_10010381; scaffold1678 TRF Tandem_Repeat 57070 57098 58 + . . scaffold1678 WUBlastX LINE_Penelope 92600 93022 81 - . . scaffold1678 WUBlastX LTR_Ngaro 94233 94442 53 + . . scaffold1678 WUBlastX LTR_Ngaro 94245 94421 84 + . . scaffold1678 WUBlastX LTR_Ngaro 94420 94473 21 + . . scaffold1678 WUBlastX LTR_Ngaro 94521 94874 126 + . . scaffold1678 WUBlastX LTR_Ngaro 94536 94964 82 + . . scaffold1678 WUBlastX LTR_Ngaro 94933 95094 22 + . . scaffold1678 WUBlastX LTR_Ngaro 95201 95395 41 + . . scaffold1678 WUBlastX LTR_Ngaro 95255 95371 66 + . . scaffold1678 WUBlastX LTR_Ngaro 95282 95407 42 + . . scaffold1678 WUBlastX LINE_Penelope 97709 98362 165 + . . scaffold1678 TRF Tandem_Repeat 99002 99046 90 + . . scaffold1678 GLEAN mRNA 102031 121781 0.957739 - . ID=CGI_10010382; scaffold1678 TRF Tandem_Repeat 106093 107554 2012 + . . scaffold1678 TRF Tandem_Repeat 106093 107554 2015 + . . scaffold1678 TRF Tandem_Repeat 107585 107636 68 + . . scaffold1678 TRF Tandem_Repeat 110938 110967 60 + . . scaffold1678 TRF Tandem_Repeat 115534 115586 106 + . . scaffold1678 GLEAN promoter 121782 122781 0.957739 - . ID=CGI_10010382; scaffold1678 TRF Tandem_Repeat 122190 122367 62 + . . scaffold1678 TRF Tandem_Repeat 123510 123562 97 + . . scaffold1678 GLEAN mRNA 124781 125086 0.999372 - . ID=CGI_10010383; scaffold1678 GLEAN promoter 125087 126086 0.999372 - . ID=CGI_10010383; scaffold1678 WUBlastX DNA_Harbinger 130733 131107 72 - . . scaffold1678 WUBlastX DNA_Harbinger 130799 131119 87 - . . scaffold1678 WUBlastX DNA_Harbinger 131160 131243 33 - . . scaffold1678 GLEAN mRNA 133649 137063 0.999998 - . ID=CGI_10010384; scaffold1678 GLEAN promoter 137064 138063 0.999998 - . ID=CGI_10010384; scaffold1678 GLEAN mRNA 138230 146515 0.998289 - . ID=CGI_10010385; scaffold1678 TRF Tandem_Repeat 141238 141293 112 + . . scaffold1678 GLEAN promoter 146516 147515 0.998289 - . ID=CGI_10010385; scaffold1678 GLEAN mRNA 153695 176010 0.290685 - . ID=CGI_10010386; scaffold1678 TRF Tandem_Repeat 162412 162795 463 + . . scaffold1678 TRF Tandem_Repeat 169218 169699 639 + . . scaffold1678 TRF Tandem_Repeat 171013 171065 70 + . . scaffold1678 TRF Tandem_Repeat 172480 172566 104 + . . scaffold1678 TRF Tandem_Repeat 172659 172867 131 + . . scaffold1678 TRF Tandem_Repeat 172867 173013 89 + . . scaffold1678 WUBlastX DNA_IS4EU 173544 173753 62 + . . scaffold1678 WUBlastX DNA_IS4EU 174224 174382 31 + . . scaffold1678 WUBlastX LINE_L1 175483 175956 24 - . . scaffold1678 GLEAN promoter 176011 177010 0.290685 - . ID=CGI_10010386; scaffold1678 GLEAN promoter 176238 177237 0.998223 + . ID=CGI_10010387; scaffold1678 GLEAN mRNA 177238 192056 0.998223 + . ID=CGI_10010387; scaffold1678 TRF Tandem_Repeat 183240 183668 410 + . . scaffold1678 TRF Tandem_Repeat 183240 184538 706 + . . scaffold1678 TRF Tandem_Repeat 183240 184538 962 + . . scaffold1678 TRF Tandem_Repeat 183666 184538 948 + . . scaffold1678 TRF Tandem_Repeat 187240 187282 86 + . . scaffold1678 TRF Tandem_Repeat 190392 190450 118 + . . scaffold1678 GLEAN promoter 191119 192118 0.59015 + . ID=CGI_10010388; scaffold1678 GLEAN mRNA 192119 193711 0.59015 + . ID=CGI_10010388; scaffold1678 TRF Tandem_Repeat 198935 198992 116 + . . scaffold1678 GLEAN mRNA 199886 203250 0.999064 - . ID=CGI_10010389; scaffold1678 TRF Tandem_Repeat 200410 200436 54 + . . scaffold1678 GLEAN promoter 203251 204250 0.999064 - . ID=CGI_10010389; scaffold1678 GLEAN promoter 203848 204847 0.926733 + . ID=CGI_10010390; scaffold1678 GLEAN mRNA 204848 218805 0.926733 + . ID=CGI_10010390; scaffold1678 TRF Tandem_Repeat 215470 215753 460 + . . scaffold1678 GLEAN promoter 219742 220741 1 + . ID=CGI_10010391; scaffold1678 GLEAN mRNA 220742 224478 1 + . ID=CGI_10010391; scaffold1678 GLEAN promoter 224214 225213 0.899615 + . ID=CGI_10010392; scaffold1678 GLEAN mRNA 225214 229518 0.899615 + . ID=CGI_10010392; scaffold1678 GLEAN mRNA 230223 233420 0.999676 - . ID=CGI_10010393; scaffold1678 GLEAN promoter 233421 234420 0.999676 - . ID=CGI_10010393; scaffold1678 GLEAN mRNA 235013 239902 0.999926 - . ID=CGI_10010394; scaffold1678 TRF Tandem_Repeat 238620 238843 306 + . . scaffold1678 TRF Tandem_Repeat 238620 238837 267 + . . scaffold1678 GLEAN promoter 239903 240902 0.999926 - . ID=CGI_10010394; scaffold1678 GLEAN promoter 253687 254686 1 + . ID=CGI_10010395; scaffold1678 TRF Tandem_Repeat 254513 254541 58 + . . scaffold1678 GLEAN mRNA 254687 257075 1 + . ID=CGI_10010395; scaffold1679 GLEAN mRNA 910 1455 0.999999 - . ID=CGI_10002337; scaffold1679 GLEAN promoter 1456 2455 0.999999 - . ID=CGI_10002337; scaffold1679 TRF Tandem_Repeat 3812 3917 114 + . . scaffold1679 TRF Tandem_Repeat 3816 3917 74 + . . scaffold1679 TRF Tandem_Repeat 3837 3915 60 + . . scaffold1679 TRF Tandem_Repeat 3837 3916 73 + . . scaffold1679 TRF Tandem_Repeat 3838 3917 85 + . . scaffold1679 TRF Tandem_Repeat 24229 24572 420 + . . scaffold1679 TRF Tandem_Repeat 24229 24868 728 + . . scaffold1679 TRF Tandem_Repeat 24229 24892 322 + . . scaffold1679 TRF Tandem_Repeat 24573 24903 452 + . . scaffold1679 TRF Tandem_Repeat 24573 24903 430 + . . scaffold1679 GLEAN mRNA 27427 41298 0.999999 - . ID=CGI_10002338; scaffold1679 WUBlastX LTR_Gypsy 27572 28150 139 - . . scaffold1679 WUBlastX LTR_Gypsy 28125 28622 258 - . . scaffold1679 WUBlastX LTR_Gypsy 28624 31473 1131 - . . scaffold1679 WUBlastX LTR_Gypsy 28792 32187 652 - . . scaffold1679 WUBlastX LTR_Gypsy 29308 30708 1157 - . . scaffold1679 WUBlastX LTR_Gypsy 31174 32424 47 - . . scaffold1679 WUBlastX LTR_Gypsy 32086 32553 43 - . . scaffold1679 GLEAN promoter 41299 42298 0.999999 - . ID=CGI_10002338; scaffold168 TRF Tandem_Repeat 5104 5209 91 + . . scaffold168 WUBlastX LINE_CR1-L2 6377 6490 36 + . . scaffold168 WUBlastX LINE_CR1 6404 6487 39 + . . scaffold168 WUBlastX LINE_CR1 6440 6490 40 + . . scaffold168 WUBlastX LINE_CR1-L2 6677 7039 94 + . . scaffold168 GLEAN promoter 12135 13134 0.999567 + . ID=CGI_10025581; scaffold168 GLEAN mRNA 13135 14006 0.999567 + . ID=CGI_10025581; scaffold168 GLEAN mRNA 17788 42641 0.990039 - . ID=CGI_10025582; scaffold168 WUBlastX LINE_RTE-X 19689 20042 58 - . . scaffold168 WUBlastX LINE_RTE-X 20158 20283 58 - . . scaffold168 WUBlastX LINE_CR1 20260 20466 21 - . . scaffold168 WUBlastX LINE_CR1 20329 20493 35 - . . scaffold168 WUBlastX LINE_RTE-X 20356 20673 133 - . . scaffold168 WUBlastX LINE_RTE-X 20667 20744 24 - . . scaffold168 WUBlastX LINE_RTE-X 20688 21128 111 - . . scaffold168 WUBlastX LINE_CR1 20985 21176 96 - . . scaffold168 TRF Tandem_Repeat 21185 21262 138 + . . scaffold168 GLEAN promoter 42642 43641 0.990039 - . ID=CGI_10025582; scaffold168 TRF Tandem_Repeat 42792 42978 286 + . . scaffold168 TRF Tandem_Repeat 50301 50357 114 + . . scaffold168 WUBlastX LTR_DIRS 70386 70880 115 - . . scaffold168 WUBlastX LTR_DIRS 70587 71027 83 - . . scaffold168 WUBlastX LTR_DIRS 74425 74988 77 - . . scaffold168 WUBlastX LTR_DIRS 74533 75093 132 - . . scaffold168 GLEAN mRNA 75120 91732 0.985534 - . ID=CGI_10025583; scaffold168 GLEAN promoter 91733 92732 0.985534 - . ID=CGI_10025583; scaffold168 GLEAN mRNA 91748 95148 0.999994 - . ID=CGI_10025584; scaffold168 GLEAN promoter 95149 96148 0.999994 - . ID=CGI_10025584; scaffold168 WUBlastX LINE_L2 99416 100117 244 - . . scaffold168 WUBlastX LINE_L2 100104 100373 110 - . . scaffold168 WUBlastX LINE_CR1-L2 100122 100448 21 - . . scaffold168 WUBlastX LTR_DIRS 109218 110102 387 - . . scaffold168 WUBlastX LTR_DIRS 109982 110929 565 - . . scaffold168 GLEAN promoter 128163 129162 0.333009 + . ID=CGI_10025585; scaffold168 GLEAN mRNA 129163 148638 0.333009 + . ID=CGI_10025585; scaffold168 TRF Tandem_Repeat 138406 138455 93 + . . scaffold168 WUBlastX DNA_Crypton 172333 173418 169 - . . scaffold168 GLEAN mRNA 178276 183101 0.805771 - . ID=CGI_10025586; scaffold168 WUBlastX DNA_MuDR 178411 178497 30 - . . scaffold168 WUBlastX DNA_MuDR 178618 178851 34 - . . scaffold168 WUBlastX DNA_MuDR 178687 178815 50 - . . scaffold168 WUBlastX DNA_MuDR 178968 179126 62 - . . scaffold168 WUBlastX DNA_MuDR 178971 179180 56 - . . scaffold168 WUBlastX DNA_MuDR 179314 179562 101 - . . scaffold168 WUBlastX DNA_MuDR 179317 179649 71 - . . scaffold168 WUBlastX DNA_MuDR 179668 179853 24 - . . scaffold168 WUBlastX LINE_CR1-L2 182095 182274 49 + . . scaffold168 GLEAN promoter 183102 184101 0.805771 - . ID=CGI_10025586; scaffold168 TRF Tandem_Repeat 218105 218146 68 + . . scaffold168 WUBlastX LINE_L1-Tx1 225187 225342 53 + . . scaffold168 WUBlastX LINE_L1-Tx1 225296 225973 263 + . . scaffold168 WUBlastX LINE_L1 225936 226355 84 + . . scaffold168 WUBlastX LINE_L1 226751 226810 23 + . . scaffold168 TRF Tandem_Repeat 234303 234726 742 + . . scaffold168 TRF Tandem_Repeat 247191 247258 136 + . . scaffold168 GLEAN promoter 260556 261555 0.885095 + . ID=CGI_10025587; scaffold168 GLEAN mRNA 261556 267016 0.885095 + . ID=CGI_10025587; scaffold168 GLEAN promoter 266565 267564 0.650157 + . ID=CGI_10025588; scaffold168 GLEAN mRNA 267565 272304 0.650157 + . ID=CGI_10025588; scaffold168 TRF Tandem_Repeat 269458 269665 150 + . . scaffold168 TRF Tandem_Repeat 278526 279866 2187 + . . scaffold168 GLEAN mRNA 295040 302568 0.397771 - . ID=CGI_10025589; scaffold168 GLEAN promoter 302569 303568 0.397771 - . ID=CGI_10025589; scaffold168 TRF Tandem_Repeat 320733 320831 85 + . . scaffold168 GLEAN mRNA 320902 337238 0.996215 - . ID=CGI_10025590; scaffold168 TRF Tandem_Repeat 321488 321554 80 + . . scaffold168 TRF Tandem_Repeat 323206 323248 86 + . . scaffold168 TRF Tandem_Repeat 323546 323579 59 + . . scaffold168 TRF Tandem_Repeat 327735 327801 89 + . . scaffold168 WUBlastX LINE_L2 331042 331506 122 - . . scaffold168 GLEAN promoter 337239 338238 0.996215 - . ID=CGI_10025590; scaffold168 TRF Tandem_Repeat 337342 337385 88 + . . scaffold168 WUBlastX LINE_RTE-X 372791 373021 20 + . . scaffold168 WUBlastX DNA_TcMar-Marin 373450 373566 39 + . . scaffold168 WUBlastX DNA_TcMar-Marin 373697 373798 35 + . . scaffold168 GLEAN mRNA 374258 375344 1 - . ID=CGI_10025591; scaffold168 GLEAN promoter 375345 376344 1 - . ID=CGI_10025591; scaffold168 GLEAN mRNA 385829 388637 0.997245 - . ID=CGI_10025592; scaffold168 GLEAN promoter 388638 389637 0.997245 - . ID=CGI_10025592; scaffold168 TRF Tandem_Repeat 398593 398617 50 + . . scaffold168 TRF Tandem_Repeat 405753 405865 199 + . . scaffold168 TRF Tandem_Repeat 410675 410708 59 + . . scaffold168 TRF Tandem_Repeat 412838 412863 52 + . . scaffold168 WUBlastX LINE_RTE-X 423490 423612 34 + . . scaffold168 GLEAN promoter 427713 428712 1 + . ID=CGI_10025593; scaffold168 GLEAN mRNA 428713 438982 1 + . ID=CGI_10025593; scaffold168 TRF Tandem_Repeat 434597 434638 50 + . . scaffold168 TRF Tandem_Repeat 434803 435613 1500 + . . scaffold168 GLEAN mRNA 443305 451857 0.999676 - . ID=CGI_10025594; scaffold168 GLEAN promoter 451858 452857 0.999676 - . ID=CGI_10025594; scaffold168 GLEAN promoter 455171 456170 1 + . ID=CGI_10025595; scaffold168 GLEAN mRNA 456171 461399 1 + . ID=CGI_10025595; scaffold168 GLEAN mRNA 462325 488825 0.998042 - . ID=CGI_10025596; scaffold168 TRF Tandem_Repeat 473941 473991 50 + . . scaffold168 GLEAN promoter 488826 489825 0.998042 - . ID=CGI_10025596; scaffold168 TRF Tandem_Repeat 491664 491793 206 + . . scaffold168 TRF Tandem_Repeat 527744 527855 197 + . . scaffold168 GLEAN mRNA 537229 538243 1 - . ID=CGI_10025597; scaffold168 GLEAN promoter 538244 539243 1 - . ID=CGI_10025597; scaffold168 TRF Tandem_Repeat 546360 546387 56 + . . scaffold168 WUBlastX LINE_Penelope 547513 549708 1249 - . . scaffold168 TRF Tandem_Repeat 549715 549749 70 + . . scaffold168 GLEAN promoter 564249 565248 1 + . ID=CGI_10025598; scaffold168 TRF Tandem_Repeat 564814 564986 274 + . . scaffold168 GLEAN mRNA 565249 565941 1 + . ID=CGI_10025598; scaffold168 TRF Tandem_Repeat 565332 565721 480 + . . scaffold168 TRF Tandem_Repeat 565498 565692 94 + . . scaffold168 TRF Tandem_Repeat 567194 567294 66 + . . scaffold168 TRF Tandem_Repeat 567201 567293 73 + . . scaffold168 TRF Tandem_Repeat 567239 567300 54 + . . scaffold168 TRF Tandem_Repeat 567315 567370 55 + . . scaffold168 TRF Tandem_Repeat 568118 568235 68 + . . scaffold168 TRF Tandem_Repeat 568132 568225 54 + . . scaffold168 TRF Tandem_Repeat 568975 569068 100 + . . scaffold168 WUBlastX LINE_RTE-X 570012 570263 43 - . . scaffold168 WUBlastX LINE_RTE-X 570042 570422 37 - . . scaffold168 WUBlastX LINE_RTE-X 570123 570263 75 - . . scaffold168 GLEAN promoter 575202 576201 0.398178 + . ID=CGI_10025599; scaffold168 GLEAN mRNA 576202 577689 0.398178 + . ID=CGI_10025599; scaffold168 GLEAN promoter 579127 580126 0.430988 + . ID=CGI_10025600; scaffold168 GLEAN mRNA 580127 599947 0.430988 + . ID=CGI_10025600; scaffold168 WUBlastX LINE_Jockey 586651 586752 40 - . . scaffold168 WUBlastX LINE_RTE-X 586669 587613 631 - . . scaffold168 WUBlastX LINE_L2 586906 587757 186 - . . scaffold168 TRF Tandem_Repeat 593065 593140 145 + . . scaffold168 GLEAN promoter 603359 604358 1 + . ID=CGI_10025601; scaffold168 GLEAN mRNA 604359 605475 1 + . ID=CGI_10025601; scaffold168 TRF Tandem_Repeat 629295 629325 53 + . . scaffold168 WUBlastX DNA_PiggyBac 631804 631902 35 - . . scaffold168 WUBlastX DNA_PiggyBac 631804 631944 31 - . . scaffold168 WUBlastX DNA_PiggyBac 632409 632501 35 - . . scaffold168 WUBlastX DNA_PiggyBac 632424 632534 36 - . . scaffold168 WUBlastX DNA_PiggyBac 632963 633046 58 - . . scaffold168 GLEAN mRNA 665469 672390 1 - . ID=CGI_10025602; scaffold168 TRF Tandem_Repeat 670164 670234 54 + . . scaffold168 GLEAN promoter 672391 673390 1 - . ID=CGI_10025602; scaffold168 TRF Tandem_Repeat 675672 675732 122 + . . scaffold168 GLEAN promoter 676609 677608 0.478919 + . ID=CGI_10025603; scaffold168 GLEAN mRNA 677609 678436 0.478919 + . ID=CGI_10025603; scaffold168 GLEAN mRNA 683913 694928 0.499919 - . ID=CGI_10025604; scaffold168 GLEAN promoter 691391 692390 0.996603 + . ID=CGI_10025605; scaffold168 GLEAN mRNA 692391 708206 0.996603 + . ID=CGI_10025605; scaffold168 GLEAN promoter 694929 695928 0.499919 - . ID=CGI_10025604; scaffold168 GLEAN mRNA 695564 710339 0.805022 - . ID=CGI_10025606; scaffold168 TRF Tandem_Repeat 700868 701712 1195 + . . scaffold168 GLEAN promoter 707219 708218 0.999415 + . ID=CGI_10025607; scaffold168 GLEAN mRNA 708219 714400 0.999415 + . ID=CGI_10025607; scaffold168 WUBlastX LINE_CR1 708450 708920 24 + . . scaffold168 GLEAN promoter 710340 711339 0.805022 - . ID=CGI_10025606; scaffold168 TRF Tandem_Repeat 716373 716402 51 + . . scaffold168 GLEAN mRNA 719089 721473 1 - . ID=CGI_10025608; scaffold168 TRF Tandem_Repeat 720182 720222 82 + . . scaffold168 GLEAN promoter 721156 722155 0.924631 + . ID=CGI_10025609; scaffold168 GLEAN promoter 721474 722473 1 - . ID=CGI_10025608; scaffold168 GLEAN mRNA 722156 727353 0.924631 + . ID=CGI_10025609; scaffold168 GLEAN mRNA 731722 743819 0.777732 - . ID=CGI_10025610; scaffold168 TRF Tandem_Repeat 740871 740902 64 + . . scaffold168 TRF Tandem_Repeat 742235 742270 63 + . . scaffold168 TRF Tandem_Repeat 742847 742916 140 + . . scaffold168 GLEAN promoter 743820 744819 0.777732 - . ID=CGI_10025610; scaffold168 GLEAN mRNA 746142 765920 0.683894 - . ID=CGI_10025611; scaffold168 WUBlastX LINE_L1 752318 752824 53 - . . scaffold168 GLEAN promoter 765921 766920 0.683894 - . ID=CGI_10025611; scaffold168 TRF Tandem_Repeat 766958 767052 56 + . . scaffold168 GLEAN mRNA 770283 801285 0.999554 - . ID=CGI_10025612; scaffold168 TRF Tandem_Repeat 789266 789336 133 + . . scaffold168 TRF Tandem_Repeat 796934 796986 106 + . . scaffold168 TRF Tandem_Repeat 797599 797646 62 + . . scaffold168 TRF Tandem_Repeat 800114 800152 51 + . . scaffold168 TRF Tandem_Repeat 800945 801004 120 + . . scaffold168 GLEAN promoter 801286 802285 0.999554 - . ID=CGI_10025612; scaffold168 TRF Tandem_Repeat 804678 804720 86 + . . scaffold168 GLEAN mRNA 813401 825394 0.374227 - . ID=CGI_10025613; scaffold168 TRF Tandem_Repeat 819943 820424 538 + . . scaffold168 TRF Tandem_Repeat 819950 820153 99 + . . scaffold168 TRF Tandem_Repeat 820160 820304 75 + . . scaffold168 TRF Tandem_Repeat 821370 822116 656 + . . scaffold168 GLEAN promoter 825395 826394 0.374227 - . ID=CGI_10025613; scaffold168 TRF Tandem_Repeat 843453 843537 102 + . . scaffold168 GLEAN mRNA 849291 854814 0.648544 - . ID=CGI_10025614; scaffold168 TRF Tandem_Repeat 851300 852009 930 + . . scaffold168 TRF Tandem_Repeat 852013 852067 58 + . . scaffold168 TRF Tandem_Repeat 852020 852066 67 + . . scaffold168 GLEAN promoter 854815 855814 0.648544 - . ID=CGI_10025614; scaffold168 GLEAN promoter 854986 855985 0.629747 + . ID=CGI_10025615; scaffold168 GLEAN mRNA 855986 860122 0.629747 + . ID=CGI_10025615; scaffold168 GLEAN mRNA 863089 864738 1 - . ID=CGI_10025616; scaffold168 WUBlastX DNA_hAT 863449 864837 26 - . . scaffold168 GLEAN promoter 864447 865446 0.999981 + . ID=CGI_10025617; scaffold168 GLEAN promoter 864739 865738 1 - . ID=CGI_10025616; scaffold168 GLEAN mRNA 865447 866112 0.999981 + . ID=CGI_10025617; scaffold168 GLEAN mRNA 870888 892867 0.863485 - . ID=CGI_10025618; scaffold168 GLEAN promoter 873724 874723 1 + . ID=CGI_10025619; scaffold168 GLEAN mRNA 874724 880474 1 + . ID=CGI_10025619; scaffold168 TRF Tandem_Repeat 877320 878021 1051 + . . scaffold168 GLEAN promoter 892868 893867 0.863485 - . ID=CGI_10025618; scaffold168 GLEAN promoter 896791 897790 0.889923 + . ID=CGI_10025620; scaffold168 GLEAN mRNA 897791 901306 0.889923 + . ID=CGI_10025620; scaffold168 TRF Tandem_Repeat 897908 897959 104 + . . scaffold168 GLEAN promoter 902397 903396 0.882177 + . ID=CGI_10025621; scaffold168 GLEAN mRNA 903397 912053 0.882177 + . ID=CGI_10025621; scaffold168 TRF Tandem_Repeat 905225 905261 74 + . . scaffold168 TRF Tandem_Repeat 906400 906435 72 + . . scaffold168 TRF Tandem_Repeat 906451 906513 126 + . . scaffold168 GLEAN mRNA 917623 926532 0.996999 - . ID=CGI_10025622; scaffold168 GLEAN promoter 926533 927532 0.996999 - . ID=CGI_10025622; scaffold168 WUBlastX LINE_L1-Tx1 927627 929540 765 + . . scaffold168 WUBlastX LINE_L1 929772 929918 46 + . . scaffold168 WUBlastX LINE_L1-Tx1 929853 929936 26 + . . scaffold168 WUBlastX LINE_L1-Tx1 929941 930063 35 + . . scaffold168 WUBlastX LINE_L1 929962 930087 28 + . . scaffold168 TRF Tandem_Repeat 937894 937952 100 + . . scaffold168 TRF Tandem_Repeat 946955 947010 67 + . . scaffold168 TRF Tandem_Repeat 946958 947010 97 + . . scaffold168 TRF Tandem_Repeat 962379 962415 65 + . . scaffold168 TRF Tandem_Repeat 970929 971041 104 + . . scaffold168 WUBlastX LINE_L2 976254 976505 52 + . . scaffold168 GLEAN mRNA 994204 994398 0.616387 - . ID=CGI_10025623; scaffold168 GLEAN promoter 994399 995398 0.616387 - . ID=CGI_10025623; scaffold168 GLEAN mRNA 995195 1004011 0.992438 - . ID=CGI_10025624; scaffold168 WUBlastX DNA_PiggyBac 997759 999378 494 - . . scaffold168 TRF Tandem_Repeat 1003387 1003413 54 + . . scaffold168 GLEAN promoter 1004012 1005011 0.992438 - . ID=CGI_10025624; scaffold168 TRF Tandem_Repeat 1009085 1009125 82 + . . scaffold168 TRF Tandem_Repeat 1017248 1017374 137 + . . scaffold168 TRF Tandem_Repeat 1017381 1017418 76 + . . scaffold168 GLEAN mRNA 1052094 1056030 0.999676 - . ID=CGI_10025625; scaffold168 GLEAN promoter 1056031 1057030 0.999676 - . ID=CGI_10025625; scaffold168 GLEAN promoter 1060165 1061164 1 + . ID=CGI_10025626; scaffold168 GLEAN mRNA 1061165 1068516 1 + . ID=CGI_10025626; scaffold168 GLEAN mRNA 1061468 1075146 0.901342 - . ID=CGI_10025627; scaffold168 WUBlastX DNA_TcMar-Tc1 1061885 1062061 26 + . . scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062465 60 + . . scaffold168 WUBlastX DNA_TcMar-Tc1 1062346 1062504 33 + . . scaffold168 WUBlastX DNA_TcMar-Tc1 1062911 1063264 115 + . . scaffold168 WUBlastX DNA_TcMar-Tc1 1062983 1063270 171 + . . scaffold168 GLEAN promoter 1074472 1075471 0.998023 + . ID=CGI_10025628; scaffold168 GLEAN promoter 1075147 1076146 0.901342 - . ID=CGI_10025627; scaffold168 GLEAN mRNA 1075472 1076647 0.998023 + . ID=CGI_10025628; scaffold168 GLEAN promoter 1075771 1076770 0.997963 + . ID=CGI_10025629; scaffold168 GLEAN mRNA 1076771 1096532 0.997963 + . ID=CGI_10025629; scaffold168 TRF Tandem_Repeat 1089258 1089286 58 + . . scaffold1680 WUBlastX LINE_RTE-X 1836 2267 57 + . . scaffold1680 WUBlastX LINE_RTE-X 1932 2267 108 + . . scaffold1680 WUBlastX LINE_RTE-X 1941 2417 93 + . . scaffold1680 WUBlastX LINE_RTE-X 1947 2177 114 + . . scaffold1680 WUBlastX LINE_RTE-X 2276 2746 73 + . . scaffold1680 TRF Tandem_Repeat 3727 3752 52 + . . scaffold1680 GLEAN promoter 6161 7160 0.990978 + . ID=CGI_10004136; scaffold1680 GLEAN mRNA 7161 8493 0.990978 + . ID=CGI_10004136; scaffold1680 GLEAN mRNA 12064 27030 0.99995 - . ID=CGI_10004137; scaffold1680 GLEAN promoter 27031 28030 0.99995 - . ID=CGI_10004137; scaffold1680 WUBlastX DNA_hAT 28219 28887 163 - . . scaffold1680 TRF Tandem_Repeat 33401 33438 67 + . . scaffold1680 TRF Tandem_Repeat 33404 33446 52 + . . scaffold1680 GLEAN mRNA 34024 35739 0.795967 - . ID=CGI_10004138; scaffold1680 GLEAN promoter 35740 36739 0.795967 - . ID=CGI_10004138; scaffold1680 TRF Tandem_Repeat 36134 36172 69 + . . scaffold1680 TRF Tandem_Repeat 36616 36654 69 + . . scaffold1680 TRF Tandem_Repeat 44091 44124 59 + . . scaffold1680 GLEAN promoter 49814 50813 1 + . ID=CGI_10004139; scaffold1680 GLEAN mRNA 50814 54138 1 + . ID=CGI_10004139; scaffold1680 TRF Tandem_Repeat 52827 52890 128 + . . scaffold1680 GLEAN mRNA 60137 87573 0.648461 - . ID=CGI_10004140; scaffold1680 TRF Tandem_Repeat 60410 61050 577 + . . scaffold1680 TRF Tandem_Repeat 62663 63318 778 + . . scaffold1680 WUBlastX LTR_Gypsy 69575 70492 62 + . . scaffold1680 WUBlastX LTR_Gypsy 69782 70291 64 + . . scaffold1680 WUBlastX LTR_Gypsy-Cigr 69914 70450 209 + . . scaffold1680 WUBlastX LTR_Gypsy 70049 72937 774 + . . scaffold1680 WUBlastX LTR_Gypsy 70847 73489 1247 + . . scaffold1680 WUBlastX LTR_Gypsy 71324 73489 1396 + . . scaffold1680 WUBlastX LTR_Gypsy 73485 74465 376 + . . scaffold1680 WUBlastX LTR_Gypsy-Cigr 73494 74306 577 + . . scaffold1680 WUBlastX LTR_Copia 74304 74582 20 + . . scaffold1680 TRF Tandem_Repeat 78245 79945 2496 + . . scaffold1680 TRF Tandem_Repeat 80107 80152 58 + . . scaffold1680 TRF Tandem_Repeat 86044 86076 50 + . . scaffold1680 GLEAN promoter 87574 88573 0.648461 - . ID=CGI_10004140; scaffold1681 WUBlastX LINE_RTE-X 5831 6379 194 + . . scaffold1682 GLEAN promoter 1 293 1 + . ID=CGI_10016037; scaffold1682 GLEAN mRNA 294 1926 1 + . ID=CGI_10016037; scaffold1682 GLEAN promoter 1490 2489 1 + . ID=CGI_10016038; scaffold1682 GLEAN mRNA 2490 9461 1 + . ID=CGI_10016038; scaffold1682 TRF Tandem_Repeat 4740 4776 74 + . . scaffold1682 TRF Tandem_Repeat 5623 6331 790 + . . scaffold1682 TRF Tandem_Repeat 16890 16938 73 + . . scaffold1682 WUBlastX DNA_Harbinger 20706 20891 50 + . . scaffold1682 TRF Tandem_Repeat 24000 24029 60 + . . scaffold1682 TRF Tandem_Repeat 25797 25824 56 + . . scaffold1682 TRF Tandem_Repeat 25823 25861 69 + . . scaffold1682 GLEAN mRNA 28482 41800 0.935335 - . ID=CGI_10016039; scaffold1682 GLEAN promoter 38840 39839 0.999999 + . ID=CGI_10016040; scaffold1682 GLEAN mRNA 39840 41870 0.999999 + . ID=CGI_10016040; scaffold1682 GLEAN promoter 41801 42800 0.935335 - . ID=CGI_10016039; scaffold1682 TRF Tandem_Repeat 42804 42848 90 + . . scaffold1682 TRF Tandem_Repeat 45171 45300 251 + . . scaffold1682 TRF Tandem_Repeat 53627 53672 56 + . . scaffold1682 TRF Tandem_Repeat 53970 54023 99 + . . scaffold1682 TRF Tandem_Repeat 60405 60474 140 + . . scaffold1682 WUBlastX LINE_L2 62312 62362 28 + . . scaffold1682 WUBlastX LINE_L2 63160 63534 29 + . . scaffold1682 WUBlastX LINE_Jockey 63244 63534 47 + . . scaffold1682 WUBlastX LINE_CR1 63289 63528 51 + . . scaffold1682 WUBlastX LINE_RTE-X 63337 63552 130 + . . scaffold1682 WUBlastX LINE_RTE-X 63549 63935 193 + . . scaffold1682 TRF Tandem_Repeat 64796 64912 117 + . . scaffold1682 GLEAN promoter 64821 65820 0.965913 + . ID=CGI_10016042; scaffold1682 GLEAN mRNA 65458 65814 0.419295 - . ID=CGI_10016041; scaffold1682 GLEAN promoter 65815 66814 0.419295 - . ID=CGI_10016041; scaffold1682 GLEAN mRNA 65821 66147 0.965913 + . ID=CGI_10016042; scaffold1682 TRF Tandem_Repeat 67128 67384 98 + . . scaffold1682 TRF Tandem_Repeat 67150 67385 255 + . . scaffold1682 TRF Tandem_Repeat 67150 67425 184 + . . scaffold1682 TRF Tandem_Repeat 68689 68776 176 + . . scaffold1682 TRF Tandem_Repeat 69718 69791 148 + . . scaffold1682 TRF Tandem_Repeat 70716 70757 84 + . . scaffold1682 TRF Tandem_Repeat 70931 70996 132 + . . scaffold1682 TRF Tandem_Repeat 71877 72074 211 + . . scaffold1682 TRF Tandem_Repeat 71919 71989 65 + . . scaffold1682 TRF Tandem_Repeat 71919 72105 180 + . . scaffold1682 TRF Tandem_Repeat 79379 79413 70 + . . scaffold1682 GLEAN promoter 85038 86037 0.999675 + . ID=CGI_10016043; scaffold1682 GLEAN mRNA 86038 90954 0.999675 + . ID=CGI_10016043; scaffold1682 GLEAN promoter 89971 90970 0.999955 + . ID=CGI_10016044; scaffold1682 GLEAN mRNA 90971 92023 0.999955 + . ID=CGI_10016044; scaffold1682 GLEAN promoter 97009 98008 0.412162 + . ID=CGI_10016045; scaffold1682 GLEAN mRNA 98009 98245 0.412162 + . ID=CGI_10016045; scaffold1682 GLEAN promoter 98448 99447 0.557886 + . ID=CGI_10016046; scaffold1682 GLEAN mRNA 99448 99666 0.557886 + . ID=CGI_10016046; scaffold1682 TRF Tandem_Repeat 100096 100221 147 + . . scaffold1682 TRF Tandem_Repeat 100466 100513 96 + . . scaffold1682 TRF Tandem_Repeat 101423 101470 96 + . . scaffold1682 TRF Tandem_Repeat 112370 112772 547 + . . scaffold1682 TRF Tandem_Repeat 113357 113391 52 + . . scaffold1682 TRF Tandem_Repeat 113871 113904 68 + . . scaffold1682 GLEAN mRNA 115377 116489 0.995822 - . ID=CGI_10016047; scaffold1682 GLEAN promoter 116490 117489 0.995822 - . ID=CGI_10016047; scaffold1682 TRF Tandem_Repeat 118725 118789 62 + . . scaffold1682 TRF Tandem_Repeat 141412 141491 153 + . . scaffold1682 GLEAN mRNA 142377 148004 0.977487 - . ID=CGI_10016048; scaffold1682 GLEAN promoter 148005 149004 0.977487 - . ID=CGI_10016048; scaffold1682 TRF Tandem_Repeat 150431 150532 186 + . . scaffold1682 TRF Tandem_Repeat 152163 152440 411 + . . scaffold1682 TRF Tandem_Repeat 152163 152422 315 + . . scaffold1682 TRF Tandem_Repeat 153695 153954 376 + . . scaffold1682 WUBlastX DNA_TcMar-Tc1 154013 154654 259 - . . scaffold1682 WUBlastX DNA_TcMar-Tc1 154693 155034 62 - . . scaffold1682 WUBlastX DNA_TcMar-Tc1 154753 155025 109 - . . scaffold1682 WUBlastX LTR_Ngaro 155389 155556 28 + . . scaffold1682 WUBlastX LTR_Ngaro 156150 156680 57 + . . scaffold1682 TRF Tandem_Repeat 168173 168249 145 + . . scaffold1682 TRF Tandem_Repeat 188189 188219 62 + . . scaffold1682 TRF Tandem_Repeat 188709 188796 88 + . . scaffold1682 TRF Tandem_Repeat 188733 188796 58 + . . scaffold1682 TRF Tandem_Repeat 188792 188882 91 + . . scaffold1682 WUBlastX LTR_Ngaro 188967 189113 61 + . . scaffold1682 WUBlastX LTR_Ngaro 189367 190398 346 + . . scaffold1682 GLEAN mRNA 191866 233299 0.316426 - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 198667 198708 50 + . . scaffold1682 TRF Tandem_Repeat 200681 200709 58 + . . scaffold1682 TRF Tandem_Repeat 204591 204672 146 + . . scaffold1682 TRF Tandem_Repeat 204670 204714 72 + . . scaffold1682 WUBlastX LINE_L2 206326 206649 80 + . . scaffold1682 WUBlastX LINE_RTE-X 206377 206724 58 + . . scaffold1682 WUBlastX LINE_RTE-X 206966 207193 25 + . . scaffold1682 WUBlastX LINE_RTE-X 207059 207241 22 + . . scaffold1682 TRF Tandem_Repeat 230294 231607 1750 + . . scaffold1682 TRF Tandem_Repeat 230548 231587 1386 + . . scaffold1682 GLEAN promoter 233300 234299 0.316426 - . ID=CGI_10016049; scaffold1682 TRF Tandem_Repeat 233602 233649 96 + . . scaffold1682 TRF Tandem_Repeat 234192 235056 1310 + . . scaffold1682 TRF Tandem_Repeat 235492 236158 700 + . . scaffold1682 TRF Tandem_Repeat 236331 236374 61 + . . scaffold1682 GLEAN mRNA 240226 255100 1 - . ID=CGI_10016050; scaffold1682 GLEAN promoter 255101 256100 1 - . ID=CGI_10016050; scaffold1682 TRF Tandem_Repeat 283064 283089 52 + . . scaffold1682 TRF Tandem_Repeat 287521 287588 127 + . . scaffold1682 TRF Tandem_Repeat 288696 288753 116 + . . scaffold1682 TRF Tandem_Repeat 301541 301585 90 + . . scaffold1682 TRF Tandem_Repeat 314245 314424 351 + . . scaffold1682 TRF Tandem_Repeat 316852 316878 54 + . . scaffold1682 TRF Tandem_Repeat 316892 316924 66 + . . scaffold1682 TRF Tandem_Repeat 316923 317013 85 + . . scaffold1682 TRF Tandem_Repeat 319134 319173 80 + . . scaffold1682 TRF Tandem_Repeat 323359 323474 171 + . . scaffold1682 WUBlastX LTR_Ngaro 324514 324972 30 + . . scaffold1682 WUBlastX LTR_Ngaro 324589 324990 69 + . . scaffold1682 WUBlastX LTR_Ngaro 325028 325078 30 + . . scaffold1682 GLEAN mRNA 335679 338495 0.333333 - . ID=CGI_10016051; scaffold1682 GLEAN promoter 338496 339495 0.333333 - . ID=CGI_10016051; scaffold1682 GLEAN mRNA 339330 348090 0.98321 - . ID=CGI_10016052; scaffold1682 GLEAN promoter 341584 342583 0.965913 + . ID=CGI_10016053; scaffold1682 GLEAN mRNA 342584 342787 0.965913 + . ID=CGI_10016053; scaffold1682 TRF Tandem_Repeat 346363 346387 50 + . . scaffold1682 GLEAN promoter 348091 349090 0.98321 - . ID=CGI_10016052; scaffold1682 GLEAN mRNA 385688 389197 0.982341 - . ID=CGI_10016054; scaffold1682 GLEAN promoter 389198 390197 0.982341 - . ID=CGI_10016054; scaffold1682 GLEAN mRNA 389291 392837 0.999114 - . ID=CGI_10016055; scaffold1682 GLEAN promoter 392838 393837 0.999114 - . ID=CGI_10016055; scaffold1682 GLEAN mRNA 396014 417981 0.701631 - . ID=CGI_10016056; scaffold1682 TRF Tandem_Repeat 414638 414682 90 + . . scaffold1682 GLEAN promoter 417982 418981 0.701631 - . ID=CGI_10016056; scaffold1682 GLEAN mRNA 419021 421187 1 - . ID=CGI_10016057; scaffold1682 GLEAN promoter 421188 422187 1 - . ID=CGI_10016057; scaffold1682 GLEAN mRNA 421857 429054 0.325277 - . ID=CGI_10016058; scaffold1682 WUBlastX LTR_Ngaro 425384 425620 48 - . . scaffold1682 WUBlastX LTR_Ngaro 425662 425901 85 - . . scaffold1682 GLEAN promoter 429055 430054 0.325277 - . ID=CGI_10016058; scaffold1682 WUBlastX LINE_L1-Tx1 429952 430212 42 - . . scaffold1682 WUBlastX LINE_L1 430024 430209 66 - . . scaffold1682 WUBlastX LINE_L1 430039 430290 34 - . . scaffold1682 WUBlastX LINE_L1 430063 430239 57 - . . scaffold1682 WUBlastX LTR_Gypsy 430862 431257 56 + . . scaffold1682 WUBlastX LTR_Gypsy-Cigr 430991 431230 58 + . . scaffold1682 WUBlastX LTR_Gypsy-Cigr 431374 431913 29 + . . scaffold1682 WUBlastX LTR_Gypsy 431473 432045 64 + . . scaffold1682 GLEAN mRNA 447464 452325 1 - . ID=CGI_10016060; scaffold1682 WUBlastX DNA_TcMar-Marin 448578 448763 32 + . . scaffold1682 WUBlastX DNA_TcMar-Marin 448617 448751 57 + . . scaffold1682 WUBlastX DNA_TcMar-Marin 448820 449266 33 + . . scaffold1682 WUBlastX DNA_TcMar-Marin 449114 449317 49 + . . scaffold1682 GLEAN promoter 452326 453325 1 - . ID=CGI_10016060; scaffold1683 GLEAN promoter 1 510 0.576 + . ID=CGI_10001137; scaffold1683 GLEAN mRNA 511 5810 0.576 + . ID=CGI_10001137; scaffold1684 GLEAN mRNA 532 7542 0.695901 - . ID=CGI_10002307; scaffold1684 GLEAN promoter 6876 7875 1 + . ID=CGI_10002308; scaffold1684 GLEAN promoter 7543 8542 0.695901 - . ID=CGI_10002307; scaffold1684 GLEAN mRNA 7876 10440 1 + . ID=CGI_10002308; scaffold1684 GLEAN mRNA 14028 19103 0.999997 - . ID=CGI_10002309; scaffold1684 GLEAN promoter 19104 20103 0.999997 - . ID=CGI_10002309; scaffold1684 GLEAN mRNA 20987 31195 0.801618 - . ID=CGI_10002310; scaffold1684 GLEAN promoter 30240 31239 0.888713 + . ID=CGI_10002311; scaffold1684 GLEAN promoter 31196 32195 0.801618 - . ID=CGI_10002310; scaffold1684 GLEAN mRNA 31240 41628 0.888713 + . ID=CGI_10002311; scaffold1685 GLEAN promoter 1 646 0.999926 + . ID=CGI_10001229; scaffold1685 GLEAN mRNA 647 1594 0.999926 + . ID=CGI_10001229; scaffold1685 GLEAN mRNA 9712 12504 0.731108 - . ID=CGI_10001230; scaffold1685 GLEAN promoter 12505 13504 0.731108 - . ID=CGI_10001230; scaffold1685 WUBlastX LINE_L1-Tx1 14738 14851 77 + . . scaffold1686 TRF Tandem_Repeat 2425 2625 111 + . . scaffold1686 GLEAN mRNA 3495 11949 0.992485 - . ID=CGI_10005072; scaffold1686 WUBlastX LINE_Jockey 10846 10983 31 + . . scaffold1686 GLEAN promoter 11950 12949 0.992485 - . ID=CGI_10005072; scaffold1686 GLEAN mRNA 12792 13442 0.862137 - . ID=CGI_10005073; scaffold1686 WUBlastX DNA_Sola 13236 13463 41 - . . scaffold1686 GLEAN promoter 13443 14442 0.862137 - . ID=CGI_10005073; scaffold1686 WUBlastX DNA_Sola 13694 13810 46 - . . scaffold1686 TRF Tandem_Repeat 18614 18756 252 + . . scaffold1686 WUBlastX LINE_CR1-L2 19628 19948 50 + . . scaffold1686 WUBlastX LINE_CR1-L2 19685 20080 72 + . . scaffold1686 TRF Tandem_Repeat 24861 24938 147 + . . scaffold1686 GLEAN mRNA 25761 26018 0.962263 - . ID=CGI_10005074; scaffold1686 GLEAN promoter 26019 27018 0.962263 - . ID=CGI_10005074; scaffold1686 WUBlastX DNA_MuDR 26362 26532 54 - . . scaffold1686 WUBlastX LTR_Gypsy-Cigr 26698 27033 52 - . . scaffold1686 WUBlastX LTR_Gypsy 26833 27033 75 - . . scaffold1686 WUBlastX LTR_Gypsy 27000 27161 51 - . . scaffold1686 WUBlastX LTR_Gypsy 27066 28793 703 - . . scaffold1686 WUBlastX LTR_Gypsy-Cigr 27462 28925 1120 - . . scaffold1686 WUBlastX LTR_Gypsy-Cigr 27507 29738 1065 - . . scaffold1686 WUBlastX LTR_Gypsy 29346 29969 38 - . . scaffold1686 WUBlastX LTR_Gypsy-Cigr 29957 30634 41 - . . scaffold1686 WUBlastX LTR_Gypsy 30107 30685 62 - . . scaffold1686 TRF Tandem_Repeat 32702 32740 78 + . . scaffold1686 TRF Tandem_Repeat 34777 34829 106 + . . scaffold1686 TRF Tandem_Repeat 35348 35395 96 + . . scaffold1686 TRF Tandem_Repeat 36383 36426 88 + . . scaffold1686 TRF Tandem_Repeat 37988 38334 414 + . . scaffold1686 TRF Tandem_Repeat 41136 41194 102 + . . scaffold1686 TRF Tandem_Repeat 41136 41190 58 + . . scaffold1686 TRF Tandem_Repeat 47675 47735 122 + . . scaffold1686 WUBlastX LINE_L1-Tx1 55241 56704 407 - . . scaffold1686 WUBlastX LINE_L1 56624 57460 89 - . . scaffold1686 WUBlastX LINE_L1-Tx1 56852 57454 348 - . . scaffold1686 GLEAN mRNA 58573 59710 0.792752 - . ID=CGI_10005075; scaffold1686 WUBlastX LINE_L1 58930 59373 22 - . . scaffold1686 WUBlastX LINE_L2 59032 59349 57 - . . scaffold1686 WUBlastX LINE_L1-Tx1 59363 59689 20 - . . scaffold1686 GLEAN promoter 59711 60710 0.792752 - . ID=CGI_10005075; scaffold1686 TRF Tandem_Repeat 69350 69396 69 + . . scaffold1686 WUBlastX DNA_TcMar-Marin 78301 78915 298 + . . scaffold1686 TRF Tandem_Repeat 85614 85639 52 + . . scaffold1686 GLEAN mRNA 85748 93996 0.279233 - . ID=CGI_10005076; scaffold1686 GLEAN promoter 93997 94996 0.279233 - . ID=CGI_10005076; scaffold1686 TRF Tandem_Repeat 97648 97697 100 + . . scaffold1686 GLEAN mRNA 107624 116450 1 - . ID=CGI_10005077; scaffold1686 TRF Tandem_Repeat 115824 115889 66 + . . scaffold1686 TRF Tandem_Repeat 115837 115882 60 + . . scaffold1686 TRF Tandem_Repeat 116012 116052 57 + . . scaffold1686 GLEAN promoter 116451 117450 1 - . ID=CGI_10005077; scaffold1687 TRF Tandem_Repeat 2450 2497 60 + . . scaffold1687 WUBlastX LINE_RTE-X 2844 3095 137 + . . scaffold1687 TRF Tandem_Repeat 3640 4932 1441 + . . scaffold1687 WUBlastX LINE_RTE-X 5046 5264 76 + . . scaffold1687 WUBlastX LINE_RTE-X 5157 5273 82 + . . scaffold1687 WUBlastX LINE_RTE-X 5175 5276 102 + . . scaffold1687 WUBlastX LINE_RTE-X 5273 5734 216 + . . scaffold1687 WUBlastX LINE_RTE-X 5279 6496 118 + . . scaffold1687 WUBlastX LINE_RTE-X 5279 5863 125 + . . scaffold1687 WUBlastX LINE_RTE-X 6263 6580 68 + . . scaffold1687 GLEAN mRNA 10240 33056 0.999555 - . ID=CGI_10008388; scaffold1687 TRF Tandem_Repeat 12714 12758 74 + . . scaffold1687 GLEAN promoter 33057 34056 0.999555 - . ID=CGI_10008388; scaffold1687 TRF Tandem_Repeat 39018 39076 118 + . . scaffold1687 TRF Tandem_Repeat 42436 42482 94 + . . scaffold1687 GLEAN promoter 42993 43992 0.919245 + . ID=CGI_10008389; scaffold1687 GLEAN mRNA 43993 49787 0.919245 + . ID=CGI_10008389; scaffold1687 TRF Tandem_Repeat 54164 54406 133 + . . scaffold1687 WUBlastX LINE_RTE-X 77668 80721 946 + . . scaffold1687 TRF Tandem_Repeat 80882 80941 57 + . . scaffold1687 GLEAN promoter 84144 85143 0.999519 + . ID=CGI_10008390; scaffold1687 GLEAN mRNA 85144 85341 0.999519 + . ID=CGI_10008390; scaffold1687 GLEAN promoter 85545 86544 0.699738 + . ID=CGI_10008391; scaffold1687 GLEAN mRNA 86545 92934 0.699738 + . ID=CGI_10008391; scaffold1687 TRF Tandem_Repeat 87700 87748 98 + . . scaffold1687 TRF Tandem_Repeat 90227 90343 109 + . . scaffold1687 TRF Tandem_Repeat 90229 90343 107 + . . scaffold1687 WUBlastX LINE_CR1-L2 97458 97673 26 + . . scaffold1687 WUBlastX LINE_CR1-L2 97494 97691 58 + . . scaffold1687 WUBlastX LINE_CR1-L2 97645 97800 28 + . . scaffold1687 WUBlastX LINE_CR1-L2 97835 98155 49 + . . scaffold1687 WUBlastX LINE_CR1-L2 97835 98059 51 + . . scaffold1687 GLEAN promoter 103383 104382 0.813408 + . ID=CGI_10008392; scaffold1687 GLEAN mRNA 104383 119625 0.813408 + . ID=CGI_10008392; scaffold1687 TRF Tandem_Repeat 108554 108759 121 + . . scaffold1687 TRF Tandem_Repeat 122478 122509 57 + . . scaffold1687 TRF Tandem_Repeat 124761 124803 86 + . . scaffold1687 GLEAN promoter 136531 137530 0.489156 + . ID=CGI_10008393; scaffold1687 GLEAN mRNA 137531 151797 0.489156 + . ID=CGI_10008393; scaffold1687 TRF Tandem_Repeat 137781 137815 52 + . . scaffold1687 TRF Tandem_Repeat 138876 138931 103 + . . scaffold1687 TRF Tandem_Repeat 152262 153001 1005 + . . scaffold1687 TRF Tandem_Repeat 155173 155269 55 + . . scaffold1687 TRF Tandem_Repeat 155587 155622 54 + . . scaffold1687 TRF Tandem_Repeat 171256 171282 54 + . . scaffold1687 GLEAN promoter 174921 175920 0.898283 + . ID=CGI_10008394; scaffold1687 GLEAN mRNA 175921 180780 0.898283 + . ID=CGI_10008394; scaffold1687 WUBlastX DNA_IS4EU 175921 176232 33 + . . scaffold1687 WUBlastX DNA_P 175933 176172 38 + . . scaffold1687 WUBlastX DNA_IS4EU 176920 177084 52 + . . scaffold1687 WUBlastX DNA_IS4EU 177195 177815 361 + . . scaffold1687 WUBlastX DNA_IS4EU 178375 178560 98 + . . scaffold1687 WUBlastX DNA_Kolobok-IS4 178891 179523 168 - . . scaffold1687 WUBlastX DNA_IS4EU 178903 179430 177 - . . scaffold1687 WUBlastX DNA_IS4EU 179567 179776 46 - . . scaffold1687 WUBlastX DNA_Academ 187419 187676 80 - . . scaffold1687 WUBlastX DNA_Academ 187431 187748 75 - . . scaffold1687 WUBlastX DNA_Academ 187669 187857 56 - . . scaffold1687 WUBlastX DNA_Academ 187910 188119 42 - . . scaffold1687 WUBlastX DNA_Academ 188008 188160 41 - . . scaffold1687 TRF Tandem_Repeat 194060 194109 91 + . . scaffold1687 GLEAN mRNA 195516 200248 1 - . ID=CGI_10008396; scaffold1687 GLEAN promoter 200249 201248 1 - . ID=CGI_10008396; scaffold1687 GLEAN mRNA 201349 202611 0.999572 - . ID=CGI_10008397; scaffold1687 GLEAN promoter 202612 203611 0.999572 - . ID=CGI_10008397; scaffold1687 GLEAN promoter 203649 204648 0.325365 + . ID=CGI_10008398; scaffold1687 GLEAN mRNA 204649 208918 0.325365 + . ID=CGI_10008398; scaffold1687 TRF Tandem_Repeat 207152 207340 279 + . . scaffold1687 TRF Tandem_Repeat 207180 207415 168 + . . scaffold1688 TRF Tandem_Repeat 1338 1380 86 + . . scaffold1688 WUBlastX LINE_RTE-X 4832 5080 65 + . . scaffold1688 TRF Tandem_Repeat 15164 15222 118 + . . scaffold1688 TRF Tandem_Repeat 15401 15475 114 + . . scaffold1688 TRF Tandem_Repeat 15625 15715 182 + . . scaffold1688 TRF Tandem_Repeat 15792 15836 90 + . . scaffold1688 TRF Tandem_Repeat 21535 21586 104 + . . scaffold1688 TRF Tandem_Repeat 26134 26228 79 + . . scaffold1688 TRF Tandem_Repeat 27830 27988 146 + . . scaffold1688 TRF Tandem_Repeat 28223 28314 123 + . . scaffold1688 TRF Tandem_Repeat 46146 46179 50 + . . scaffold1688 TRF Tandem_Repeat 58224 58248 50 + . . scaffold1688 TRF Tandem_Repeat 59958 59982 50 + . . scaffold1688 WUBlastX LTR_Copia 67899 68138 23 - . . scaffold1688 WUBlastX LTR_Copia 67905 67964 32 - . . scaffold1688 WUBlastX LTR_Gypsy 68001 69020 446 - . . scaffold1688 WUBlastX LTR_Gypsy 68163 69023 580 - . . scaffold1688 WUBlastX LTR_Gypsy 69013 69225 74 - . . scaffold1688 WUBlastX LTR_Gypsy 69061 69888 460 - . . scaffold1688 WUBlastX LTR_Gypsy 69493 69963 154 - . . scaffold1688 TRF Tandem_Repeat 70564 70673 157 + . . scaffold1688 TRF Tandem_Repeat 70564 70670 160 + . . scaffold1688 TRF Tandem_Repeat 70564 70673 157 + . . scaffold1688 WUBlastX LTR_Gypsy-Cigr 71091 72830 919 - . . scaffold1688 WUBlastX LTR_Gypsy 72177 73073 88 - . . scaffold1688 WUBlastX LTR_Gypsy 72531 73370 67 - . . scaffold1688 WUBlastX LTR_Gypsy-Cigr 73361 73792 104 - . . scaffold1688 WUBlastX LTR_Gypsy 73370 73711 128 - . . scaffold1688 WUBlastX LTR_Pao 73502 73921 23 - . . scaffold1688 TRF Tandem_Repeat 81980 82231 357 + . . scaffold1688 TRF Tandem_Repeat 81980 82231 360 + . . scaffold1688 TRF Tandem_Repeat 89724 89755 64 + . . scaffold1688 TRF Tandem_Repeat 89755 89812 116 + . . scaffold1688 WUBlastX LINE_L1-Tx1 92217 92573 192 + . . scaffold1688 GLEAN mRNA 102004 116587 0.910228 - . ID=CGI_10009208; scaffold1688 GLEAN promoter 116588 117587 0.910228 - . ID=CGI_10009208; scaffold1688 GLEAN promoter 123696 124695 0.999997 + . ID=CGI_10009209; scaffold1688 GLEAN mRNA 124696 125382 0.999997 + . ID=CGI_10009209; scaffold1688 GLEAN mRNA 127405 131303 1 - . ID=CGI_10009210; scaffold1688 TRF Tandem_Repeat 129692 129733 84 + . . scaffold1688 GLEAN promoter 131304 132303 1 - . ID=CGI_10009210; scaffold1688 WUBlastX LINE_RTE-X 133739 133834 28 - . . scaffold1688 WUBlastX LINE_RTE-X 133812 134222 27 - . . scaffold1688 WUBlastX LINE_RTE-X 134248 134343 25 - . . scaffold1688 TRF Tandem_Repeat 136211 136318 184 + . . scaffold1688 GLEAN promoter 137240 138239 0.503309 + . ID=CGI_10009211; scaffold1688 GLEAN mRNA 138240 141724 0.503309 + . ID=CGI_10009211; scaffold1688 GLEAN mRNA 142987 168874 0.603019 - . ID=CGI_10009212; scaffold1688 TRF Tandem_Repeat 156333 156373 82 + . . scaffold1688 GLEAN promoter 168875 169874 0.603019 - . ID=CGI_10009212; scaffold1688 WUBlastX DNA_Kolobok 173015 173395 24 - . . scaffold1688 GLEAN mRNA 174971 179883 1 - . ID=CGI_10009214; scaffold1688 TRF Tandem_Repeat 176900 177954 1346 + . . scaffold1688 GLEAN promoter 179884 180883 1 - . ID=CGI_10009214; scaffold1688 GLEAN promoter 185454 186453 0.99935 + . ID=CGI_10009215; scaffold1688 GLEAN mRNA 186454 218439 0.99935 + . ID=CGI_10009215; scaffold1688 TRF Tandem_Repeat 188608 188668 77 + . . scaffold1688 TRF Tandem_Repeat 188608 188667 57 + . . scaffold1688 TRF Tandem_Repeat 188617 188668 59 + . . scaffold1688 GLEAN mRNA 222322 227505 0.5 - . ID=CGI_10009216; scaffold1688 GLEAN promoter 227506 227507 0.5 - . ID=CGI_10009216; scaffold169 WUBlastX LINE_CR1 910 1038 25 + . . scaffold169 WUBlastX LINE_CR1 951 1256 91 + . . scaffold169 WUBlastX LINE_CR1 999 1247 92 + . . scaffold169 WUBlastX LINE_CR1-L2 1037 2065 590 + . . scaffold169 WUBlastX LINE_CR1-L2 1223 2065 644 + . . scaffold169 WUBlastX LINE_CR1 1247 2224 391 + . . scaffold169 WUBlastX LINE_L2 2086 2799 211 + . . scaffold169 WUBlastX LINE_CR1-L2 2999 3046 22 + . . scaffold169 WUBlastX LINE_L2 15603 16004 93 + . . scaffold169 WUBlastX LINE_L1 15687 16016 127 + . . scaffold169 WUBlastX LINE_L1-Tx1 15768 16208 73 + . . scaffold169 WUBlastX LINE_RTE-X 16304 16588 70 + . . scaffold169 WUBlastX LINE_L2 16304 16660 24 + . . scaffold169 WUBlastX LINE_RTE-X 16319 16555 81 + . . scaffold169 WUBlastX LINE_RTE-X 16725 17375 59 + . . scaffold169 WUBlastX LINE_L1 17554 17754 61 + . . scaffold169 WUBlastX LINE_L1-Tx1 17563 17724 80 + . . scaffold169 WUBlastX LINE_L1-Tx1 28218 28508 117 + . . scaffold169 WUBlastX LINE_L1-Tx1 29423 29545 21 + . . scaffold169 GLEAN promoter 30609 31608 0.712323 + . ID=CGI_10022939; scaffold169 GLEAN mRNA 31609 39159 0.712323 + . ID=CGI_10022939; scaffold169 WUBlastX LINE_RTE-X 31894 32211 44 + . . scaffold169 GLEAN promoter 46735 47734 1 + . ID=CGI_10022940; scaffold169 GLEAN mRNA 47735 49611 1 + . ID=CGI_10022940; scaffold169 TRF Tandem_Repeat 50378 50444 89 + . . scaffold169 TRF Tandem_Repeat 52823 52853 62 + . . scaffold169 TRF Tandem_Repeat 53033 53067 70 + . . scaffold169 TRF Tandem_Repeat 53065 53103 78 + . . scaffold169 TRF Tandem_Repeat 53602 53668 89 + . . scaffold169 GLEAN promoter 55211 56210 0.984005 + . ID=CGI_10022941; scaffold169 GLEAN mRNA 56211 57964 0.984005 + . ID=CGI_10022941; scaffold169 WUBlastX LINE_RTE-X 58701 59108 35 + . . scaffold169 WUBlastX LINE_RTE-X 58866 59108 84 + . . scaffold169 WUBlastX LINE_RTE-X 58947 59252 42 + . . scaffold169 WUBlastX LINE_RTE-X 59204 59374 23 + . . scaffold169 WUBlastX LINE_Jockey 62372 62587 38 + . . scaffold169 WUBlastX LINE_RTE-X 62586 62870 65 + . . scaffold169 WUBlastX LINE_RTE-X 62613 62852 74 + . . scaffold169 WUBlastX DNA_TcMar-Tigge 64054 64215 40 + . . scaffold169 WUBlastX DNA_TcMar-Pogo 64057 64179 72 + . . scaffold169 WUBlastX DNA_TcMar-Pogo 64256 65023 377 + . . scaffold169 GLEAN mRNA 67377 73546 0.998513 - . ID=CGI_10022942; scaffold169 GLEAN promoter 73547 74546 0.998513 - . ID=CGI_10022942; scaffold169 GLEAN mRNA 73549 100756 0.999882 - . ID=CGI_10022943; scaffold169 TRF Tandem_Repeat 96427 96480 65 + . . scaffold169 TRF Tandem_Repeat 97625 97737 129 + . . scaffold169 GLEAN promoter 98651 99650 0.999428 + . ID=CGI_10022944; scaffold169 GLEAN mRNA 99651 105543 0.999428 + . ID=CGI_10022944; scaffold169 GLEAN promoter 100757 101756 0.999882 - . ID=CGI_10022943; scaffold169 TRF Tandem_Repeat 103277 103315 78 + . . scaffold169 TRF Tandem_Repeat 109286 109344 118 + . . scaffold169 TRF Tandem_Repeat 110928 111695 762 + . . scaffold169 TRF Tandem_Repeat 110930 111699 757 + . . scaffold169 TRF Tandem_Repeat 110951 111699 636 + . . scaffold169 TRF Tandem_Repeat 127945 127985 82 + . . scaffold169 GLEAN mRNA 133171 147962 0.999662 - . ID=CGI_10022945; scaffold169 TRF Tandem_Repeat 135373 135486 185 + . . scaffold169 TRF Tandem_Repeat 135488 135542 110 + . . scaffold169 TRF Tandem_Repeat 137117 137165 84 + . . scaffold169 TRF Tandem_Repeat 140068 140111 88 + . . scaffold169 TRF Tandem_Repeat 140769 140848 160 + . . scaffold169 TRF Tandem_Repeat 145694 145781 128 + . . scaffold169 TRF Tandem_Repeat 145821 145891 87 + . . scaffold169 GLEAN promoter 147963 148962 0.999662 - . ID=CGI_10022945; scaffold169 GLEAN mRNA 158136 163425 0.840357 - . ID=CGI_10022946; scaffold169 TRF Tandem_Repeat 160246 161323 1970 + . . scaffold169 GLEAN promoter 163426 164425 0.840357 - . ID=CGI_10022946; scaffold169 TRF Tandem_Repeat 163553 163609 51 + . . scaffold169 TRF Tandem_Repeat 163553 163610 53 + . . scaffold169 TRF Tandem_Repeat 163553 163600 57 + . . scaffold169 TRF Tandem_Repeat 166746 166798 97 + . . scaffold169 TRF Tandem_Repeat 168998 169041 88 + . . scaffold169 TRF Tandem_Repeat 170512 170554 86 + . . scaffold169 GLEAN mRNA 173245 173469 0.733494 - . ID=CGI_10022947; scaffold169 GLEAN promoter 173470 174469 0.733494 - . ID=CGI_10022947; scaffold169 GLEAN mRNA 176900 179862 0.999999 - . ID=CGI_10022948; scaffold169 GLEAN promoter 179863 180862 0.999999 - . ID=CGI_10022948; scaffold169 TRF Tandem_Repeat 181897 181956 95 + . . scaffold169 TRF Tandem_Repeat 182507 182784 326 + . . scaffold169 TRF Tandem_Repeat 183356 183440 129 + . . scaffold169 TRF Tandem_Repeat 183548 183584 74 + . . scaffold169 TRF Tandem_Repeat 185724 186585 623 + . . scaffold169 WUBlastX DNA_IS4EU 191086 191367 42 + . . scaffold169 TRF Tandem_Repeat 193188 193227 53 + . . scaffold169 GLEAN mRNA 195171 195494 0.999372 - . ID=CGI_10022949; scaffold169 GLEAN promoter 195495 196494 0.999372 - . ID=CGI_10022949; scaffold169 TRF Tandem_Repeat 196223 196362 208 + . . scaffold169 GLEAN promoter 237697 238696 0.691427 + . ID=CGI_10022950; scaffold169 GLEAN mRNA 238697 240357 0.691427 + . ID=CGI_10022950; scaffold169 TRF Tandem_Repeat 257454 257490 74 + . . scaffold169 TRF Tandem_Repeat 264768 264803 72 + . . scaffold169 GLEAN promoter 288764 289763 0.839155 + . ID=CGI_10022951; scaffold169 GLEAN mRNA 289764 307909 0.839155 + . ID=CGI_10022951; scaffold169 TRF Tandem_Repeat 290460 290498 78 + . . scaffold169 TRF Tandem_Repeat 290629 290726 106 + . . scaffold169 TRF Tandem_Repeat 292882 292987 139 + . . scaffold169 GLEAN mRNA 311192 325319 1 - . ID=CGI_10022952; scaffold169 TRF Tandem_Repeat 317158 317260 140 + . . scaffold169 TRF Tandem_Repeat 322300 322357 116 + . . scaffold169 GLEAN promoter 325320 326319 1 - . ID=CGI_10022952; scaffold169 TRF Tandem_Repeat 327056 327174 91 + . . scaffold169 TRF Tandem_Repeat 327790 327884 127 + . . scaffold169 TRF Tandem_Repeat 327931 328029 182 + . . scaffold169 GLEAN mRNA 349676 355862 1 - . ID=CGI_10022953; scaffold169 GLEAN promoter 355863 356862 1 - . ID=CGI_10022953; scaffold169 GLEAN mRNA 366815 367655 0.999676 - . ID=CGI_10022954; scaffold169 GLEAN promoter 367656 368655 0.999676 - . ID=CGI_10022954; scaffold169 GLEAN mRNA 368236 385589 0.814807 - . ID=CGI_10022955; scaffold169 GLEAN promoter 385590 386589 0.814807 - . ID=CGI_10022955; scaffold169 TRF Tandem_Repeat 388278 388322 90 + . . scaffold169 WUBlastX DNA_Harbinger 389346 389759 105 + . . scaffold169 WUBlastX DNA_Harbinger 391256 391375 91 + . . scaffold169 WUBlastX DNA_Harbinger 391360 391389 23 + . . scaffold169 WUBlastX DNA_Harbinger 391595 391735 55 + . . scaffold169 WUBlastX DNA_Harbinger 391833 391964 85 + . . scaffold169 TRF Tandem_Repeat 397430 397475 92 + . . scaffold169 TRF Tandem_Repeat 402873 402919 94 + . . scaffold169 TRF Tandem_Repeat 405724 405768 90 + . . scaffold169 GLEAN promoter 414329 415328 0.990496 + . ID=CGI_10022956; scaffold169 GLEAN mRNA 415329 447418 0.990496 + . ID=CGI_10022956; scaffold169 TRF Tandem_Repeat 424545 424599 110 + . . scaffold169 TRF Tandem_Repeat 431272 431359 87 + . . scaffold169 TRF Tandem_Repeat 451512 452658 1564 + . . scaffold169 TRF Tandem_Repeat 456990 457034 90 + . . scaffold169 WUBlastX LINE_L1-Tx1 457286 457579 63 - . . scaffold169 WUBlastX LINE_L1-Tx1 457304 457546 97 - . . scaffold169 TRF Tandem_Repeat 459952 460879 993 + . . scaffold169 TRF Tandem_Repeat 463093 463152 120 + . . scaffold169 TRF Tandem_Repeat 463753 463783 62 + . . scaffold169 TRF Tandem_Repeat 478614 479439 1172 + . . scaffold169 TRF Tandem_Repeat 479446 479488 59 + . . scaffold169 WUBlastX LINE_L2 481426 481866 20 - . . scaffold169 WUBlastX LINE_CR1-L2 483861 484181 40 - . . scaffold169 WUBlastX LINE_L2 483945 484214 64 - . . scaffold169 WUBlastX LINE_CR1-L2 483981 484196 82 - . . scaffold169 GLEAN promoter 500636 501635 0.733495 + . ID=CGI_10022957; scaffold169 WUBlastX LTR_Gypsy 500899 501063 69 + . . scaffold169 GLEAN mRNA 501636 501917 0.733495 + . ID=CGI_10022957; scaffold169 WUBlastX DNA_Kolobok 502859 503290 21 + . . scaffold169 WUBlastX DNA_Kolobok 503150 503293 55 + . . scaffold169 WUBlastX LTR_Pao 504403 504960 120 - . . scaffold169 WUBlastX LTR_Pao 504409 505092 113 - . . scaffold169 WUBlastX LTR_Pao 504421 505299 110 - . . scaffold169 WUBlastX LTR_Pao 505057 505443 43 - . . scaffold169 WUBlastX LTR_Pao 505057 505371 45 - . . scaffold169 WUBlastX DNA_Kolobok 509576 509791 41 - . . scaffold169 WUBlastX DNA_Kolobok 512592 512798 73 + . . scaffold169 TRF Tandem_Repeat 524456 524511 103 + . . scaffold169 TRF Tandem_Repeat 532881 532925 90 + . . scaffold169 TRF Tandem_Repeat 539918 539951 59 + . . scaffold169 TRF Tandem_Repeat 542145 543843 2280 + . . scaffold169 TRF Tandem_Repeat 542145 543834 2216 + . . scaffold169 TRF Tandem_Repeat 544004 544042 60 + . . scaffold169 WUBlastX DNA_Sola 558801 559154 86 + . . scaffold169 GLEAN promoter 561612 562611 1 + . ID=CGI_10022958; scaffold169 WUBlastX DNA_Sola 562555 564417 864 + . . scaffold169 GLEAN mRNA 562612 565291 1 + . ID=CGI_10022958; scaffold169 WUBlastX DNA_Sola 564668 565312 170 + . . scaffold169 TRF Tandem_Repeat 576140 576211 110 + . . scaffold169 TRF Tandem_Repeat 576587 576638 104 + . . scaffold169 WUBlastX LTR_Pao 578484 578831 45 + . . scaffold169 WUBlastX LTR_Pao 578598 579557 53 + . . scaffold169 WUBlastX LTR_Pao 578766 580646 1042 + . . scaffold169 WUBlastX LTR_Pao 580587 580679 49 + . . scaffold169 WUBlastX LTR_Pao 580679 581131 301 + . . scaffold169 WUBlastX LTR_Pao 581038 583860 2370 + . . scaffold169 WUBlastX LINE_Penelope 602888 603487 281 + . . scaffold169 GLEAN promoter 608897 609896 0.88882 + . ID=CGI_10022959; scaffold169 GLEAN mRNA 609897 625803 0.88882 + . ID=CGI_10022959; scaffold169 TRF Tandem_Repeat 613077 613105 58 + . . scaffold169 TRF Tandem_Repeat 621637 622345 867 + . . scaffold169 GLEAN mRNA 628224 637732 0.973288 - . ID=CGI_10022960; scaffold169 WUBlastX LTR_Gypsy 629126 629560 146 + . . scaffold169 WUBlastX LTR_Gypsy 629556 630692 871 + . . scaffold169 WUBlastX LTR_Gypsy 630210 630839 342 + . . scaffold169 WUBlastX LTR_Gypsy 630806 632353 889 + . . scaffold169 WUBlastX LTR_Copia 632207 632455 21 + . . scaffold169 WUBlastX LTR_Gypsy 632429 632563 26 + . . scaffold169 WUBlastX DNA_Sola 635126 636838 759 - . . scaffold169 WUBlastX DNA_Sola 635513 637102 51 - . . scaffold169 GLEAN promoter 637733 638732 0.973288 - . ID=CGI_10022960; scaffold169 TRF Tandem_Repeat 637792 638367 1044 + . . scaffold169 WUBlastX DNA_hAT-Tip100 640382 640651 110 + . . scaffold169 TRF Tandem_Repeat 641206 641240 63 + . . scaffold169 TRF Tandem_Repeat 641583 641638 112 + . . scaffold169 WUBlastX LTR_Gypsy 644244 645092 116 + . . scaffold169 WUBlastX LTR_Gypsy 644412 645092 143 + . . scaffold169 WUBlastX DNA_Maverick 644580 645416 117 + . . scaffold169 WUBlastX DNA_Maverick 644580 645140 164 + . . scaffold169 WUBlastX DNA_Maverick 644628 645272 126 + . . scaffold169 WUBlastX RC_Helitron 645546 646046 82 + . . scaffold169 TRF Tandem_Repeat 648257 648304 96 + . . scaffold169 TRF Tandem_Repeat 654353 654402 57 + . . scaffold169 TRF Tandem_Repeat 655342 655543 230 + . . scaffold169 WUBlastX LINE_L2 658038 658430 72 - . . scaffold169 GLEAN promoter 662398 663397 1 + . ID=CGI_10022961; scaffold169 GLEAN mRNA 663398 670678 1 + . ID=CGI_10022961; scaffold169 GLEAN mRNA 675340 678641 0.97088 - . ID=CGI_10022962; scaffold169 GLEAN promoter 678642 679641 0.97088 - . ID=CGI_10022962; scaffold169 TRF Tandem_Repeat 685030 685074 90 + . . scaffold169 GLEAN promoter 687807 688806 1 + . ID=CGI_10022963; scaffold169 GLEAN mRNA 688807 689772 1 + . ID=CGI_10022963; scaffold169 TRF Tandem_Repeat 691676 691702 54 + . . scaffold169 TRF Tandem_Repeat 693113 693860 763 + . . scaffold169 TRF Tandem_Repeat 693208 693860 661 + . . scaffold169 TRF Tandem_Repeat 695671 695741 88 + . . scaffold169 WUBlastX LTR_Gypsy 707141 707317 45 + . . scaffold169 WUBlastX LTR_Gypsy 707171 708175 301 + . . scaffold169 WUBlastX LTR_Gypsy 707334 707714 307 + . . scaffold169 WUBlastX LTR_Gypsy 707711 708175 306 + . . scaffold169 WUBlastX LTR_Gypsy 708109 708204 20 + . . scaffold169 WUBlastX LTR_Gypsy 708118 708186 24 + . . scaffold169 WUBlastX LTR_Gypsy 708202 709278 256 + . . scaffold169 WUBlastX LTR_Gypsy 708631 709287 264 + . . scaffold169 WUBlastX LTR_Gypsy 709290 709373 52 + . . scaffold169 WUBlastX LTR_Gypsy 709290 709406 30 + . . scaffold169 WUBlastX LTR_Gypsy 710160 710609 148 + . . scaffold169 WUBlastX LTR_Gypsy 710172 710798 113 + . . scaffold169 TRF Tandem_Repeat 711619 712519 1369 + . . scaffold169 TRF Tandem_Repeat 719782 719815 68 + . . scaffold169 GLEAN promoter 737106 738105 0.857639 + . ID=CGI_10022965; scaffold169 GLEAN mRNA 738106 739715 0.857639 + . ID=CGI_10022965; scaffold169 TRF Tandem_Repeat 757308 757337 60 + . . scaffold169 TRF Tandem_Repeat 758018 758052 54 + . . scaffold169 WUBlastX DNA_Crypton 767182 767460 29 - . . scaffold169 WUBlastX DNA_Crypton 767538 767795 46 - . . scaffold169 TRF Tandem_Repeat 772135 772215 153 + . . scaffold169 WUBlastX LINE_L1-Tx1 772390 773067 54 - . . scaffold169 WUBlastX LINE_L1-Tx1 772507 773064 144 - . . scaffold169 WUBlastX LINE_L1 773097 773315 28 - . . scaffold169 WUBlastX LINE_L1-Tx1 773196 773330 43 - . . scaffold169 WUBlastX LINE_L1-Tx1 773196 773303 52 - . . scaffold169 TRF Tandem_Repeat 776330 776778 319 + . . scaffold169 WUBlastX DNA_Sola 784125 784313 132 + . . scaffold169 TRF Tandem_Repeat 784447 784483 74 + . . scaffold169 WUBlastX DNA_Sola 784503 784895 138 + . . scaffold169 WUBlastX DNA_Sola 784560 784889 175 + . . scaffold169 WUBlastX DNA_Sola 785177 785770 151 + . . scaffold169 WUBlastX DNA_Sola 785213 785707 188 + . . scaffold169 TRF Tandem_Repeat 788553 788603 102 + . . scaffold169 WUBlastX DNA_IS4EU 788672 788776 41 + . . scaffold169 WUBlastX DNA_IS4EU 788932 789021 29 + . . scaffold169 WUBlastX DNA_IS4EU 789244 789411 29 + . . scaffold169 WUBlastX DNA_IS4EU 789313 789384 41 + . . scaffold169 WUBlastX DNA_IS4EU 789579 789818 40 + . . scaffold169 WUBlastX DNA_IS4EU 789612 789806 77 + . . scaffold169 WUBlastX DNA_IS4EU 790294 791037 195 - . . scaffold169 WUBlastX DNA_IS4EU 790546 791046 220 - . . scaffold169 TRF Tandem_Repeat 793473 794603 1544 + . . scaffold169 TRF Tandem_Repeat 796008 798356 3160 + . . scaffold169 GLEAN promoter 801679 802678 0.636202 + . ID=CGI_10022966; scaffold169 GLEAN mRNA 802679 805184 0.636202 + . ID=CGI_10022966; scaffold169 WUBlastX DNA_Sola 803577 804788 67 + . . scaffold169 WUBlastX DNA_Sola 803790 804809 70 + . . scaffold169 WUBlastX DNA_Sola 804372 804992 180 + . . scaffold169 WUBlastX DNA_hAT-Ac 806113 806412 43 - . . scaffold169 TRF Tandem_Repeat 807600 807653 81 + . . scaffold1690 WUBlastX LINE_L2 2294 2416 27 - . . scaffold1690 WUBlastX LINE_CR1 2318 2410 33 - . . scaffold1690 WUBlastX LINE_L2 2382 2561 33 - . . scaffold1690 WUBlastX LINE_CR1-L2 2442 2549 33 - . . scaffold1690 WUBlastX LINE_CR1 2575 2826 39 - . . scaffold1690 TRF Tandem_Repeat 5317 5341 50 + . . scaffold1690 TRF Tandem_Repeat 6574 6668 99 + . . scaffold1690 TRF Tandem_Repeat 6574 6704 149 + . . scaffold1690 TRF Tandem_Repeat 6578 6670 114 + . . scaffold1690 TRF Tandem_Repeat 6590 6725 173 + . . scaffold1690 TRF Tandem_Repeat 6620 6725 149 + . . scaffold1690 GLEAN mRNA 9012 64265 0.995929 - . ID=CGI_10003316; scaffold1690 TRF Tandem_Repeat 18986 19203 330 + . . scaffold1690 TRF Tandem_Repeat 33044 33618 1141 + . . scaffold1690 TRF Tandem_Repeat 35609 35648 80 + . . scaffold1690 TRF Tandem_Repeat 36469 36893 365 + . . scaffold1690 WUBlastX LINE_L1-Tx1 47721 48044 44 + . . scaffold1690 WUBlastX LINE_L1-Tx1 47775 48080 49 + . . scaffold1690 GLEAN promoter 64266 65265 0.995929 - . ID=CGI_10003316; scaffold1690 TRF Tandem_Repeat 66294 66327 68 + . . scaffold1692 GLEAN mRNA 6559 7005 1 - . ID=CGI_10004024; scaffold1692 TRF Tandem_Repeat 6650 7281 976 + . . scaffold1692 GLEAN promoter 7006 8005 1 - . ID=CGI_10004024; scaffold1692 TRF Tandem_Repeat 13240 13778 651 + . . scaffold1692 TRF Tandem_Repeat 13370 13661 485 + . . scaffold1692 TRF Tandem_Repeat 14304 14359 94 + . . scaffold1692 TRF Tandem_Repeat 14305 14359 74 + . . scaffold1692 TRF Tandem_Repeat 30268 30312 90 + . . scaffold1692 TRF Tandem_Repeat 30401 30437 56 + . . scaffold1692 WUBlastX LINE_RTE-BovB 30620 30724 22 + . . scaffold1692 WUBlastX LINE_RTE-BovB 30793 30957 111 + . . scaffold1692 WUBlastX LINE_RTE-BovB 30934 31533 112 + . . scaffold1692 WUBlastX LINE_Penelope 34959 35159 24 + . . scaffold1692 GLEAN promoter 39202 40201 0.152045 + . ID=CGI_10004025; scaffold1692 GLEAN mRNA 40202 58829 0.152045 + . ID=CGI_10004025; scaffold1692 TRF Tandem_Repeat 46819 46869 75 + . . scaffold1692 TRF Tandem_Repeat 47014 47059 92 + . . scaffold1692 WUBlastX LINE_L1-Tx1 52510 52650 36 - . . scaffold1692 WUBlastX LINE_L1-Tx1 52677 53060 90 - . . scaffold1692 WUBlastX LINE_L1-Tx1 52934 53344 104 - . . scaffold1692 WUBlastX LINE_L1-Tx1 52955 53461 58 - . . scaffold1692 GLEAN mRNA 57072 67994 0.651135 - . ID=CGI_10004026; scaffold1692 TRF Tandem_Repeat 57238 57343 140 + . . scaffold1692 TRF Tandem_Repeat 67433 67474 84 + . . scaffold1692 GLEAN promoter 67995 68994 0.651135 - . ID=CGI_10004026; scaffold1692 GLEAN promoter 70657 71656 1 + . ID=CGI_10004027; scaffold1692 TRF Tandem_Repeat 70891 70916 52 + . . scaffold1692 TRF Tandem_Repeat 70997 71055 118 + . . scaffold1692 GLEAN mRNA 71657 73321 1 + . ID=CGI_10004027; scaffold1693 GLEAN mRNA 3064 7419 0.536634 - . ID=CGI_10001500; scaffold1693 GLEAN promoter 7420 8419 0.536634 - . ID=CGI_10001500; scaffold1693 GLEAN promoter 8174 9173 0.999674 + . ID=CGI_10001501; scaffold1693 TRF Tandem_Repeat 8511 8961 462 + . . scaffold1693 TRF Tandem_Repeat 8513 8962 469 + . . scaffold1693 GLEAN mRNA 9174 12821 0.999674 + . ID=CGI_10001501; scaffold1693 GLEAN promoter 12623 13622 0.544674 + . ID=CGI_10001502; scaffold1693 GLEAN mRNA 13623 14491 0.544674 + . ID=CGI_10001502; scaffold1693 WUBlastX LINE_RTE-X 19905 20222 45 - . . scaffold1693 WUBlastX LINE_RTE-X 19950 20219 53 - . . scaffold1693 WUBlastX DNA_TcMar-Marin 22759 23169 159 + . . scaffold1693 WUBlastX DNA_TcMar-Marin 22825 23172 218 + . . scaffold1694 GLEAN mRNA 395 12053 0.95644 - . ID=CGI_10000986; scaffold1694 GLEAN promoter 12054 13053 0.95644 - . ID=CGI_10000986; scaffold1695 GLEAN mRNA 965 1783 1 - . ID=CGI_10001117; scaffold1695 GLEAN promoter 1784 2783 1 - . ID=CGI_10001117; scaffold1695 GLEAN mRNA 2426 5732 1 - . ID=CGI_10001118; scaffold1695 GLEAN promoter 5733 6732 1 - . ID=CGI_10001118; scaffold1695 WUBlastX LINE_CR1 14146 14466 43 + . . scaffold1695 WUBlastX LINE_CR1 14290 14643 29 + . . scaffold1696 GLEAN mRNA 261 23562 0.414457 - . ID=CGI_10003674; scaffold1696 WUBlastX LTR_Pao 2524 2757 27 + . . scaffold1696 WUBlastX LTR_Pao 2760 3203 270 + . . scaffold1696 WUBlastX LTR_Pao 3188 3280 74 + . . scaffold1696 WUBlastX LTR_Pao 3286 4203 818 + . . scaffold1696 TRF Tandem_Repeat 17117 17163 94 + . . scaffold1696 TRF Tandem_Repeat 21031 21085 110 + . . scaffold1696 GLEAN promoter 23563 24562 0.414457 - . ID=CGI_10003674; scaffold1696 WUBlastX DNA_TcMar-Marin 25043 25447 253 - . . scaffold1696 WUBlastX DNA_TcMar-Marin 25529 26086 262 - . . scaffold1696 WUBlastX DNA_TcMar-Marin 25637 26095 281 - . . scaffold1696 WUBlastX DNA_TcMar-Marin 26098 26328 57 - . . scaffold1696 WUBlastX DNA_TcMar-Marin 26110 26295 93 - . . scaffold1696 GLEAN promoter 28101 29100 0.999287 + . ID=CGI_10003675; scaffold1696 GLEAN mRNA 29101 34858 0.999287 + . ID=CGI_10003675; scaffold1696 TRF Tandem_Repeat 33438 33481 63 + . . scaffold1696 GLEAN promoter 36078 37077 0.518961 + . ID=CGI_10003676; scaffold1696 GLEAN mRNA 37078 44631 0.518961 + . ID=CGI_10003676; scaffold1696 TRF Tandem_Repeat 47908 48106 283 + . . scaffold1696 GLEAN promoter 55943 56942 0.99994 + . ID=CGI_10003677; scaffold1696 TRF Tandem_Repeat 56543 56587 81 + . . scaffold1696 GLEAN mRNA 56943 57997 0.99994 + . ID=CGI_10003677; scaffold1696 TRF Tandem_Repeat 59976 60011 54 + . . scaffold1696 GLEAN promoter 62416 63415 0.999905 + . ID=CGI_10003678; scaffold1696 TRF Tandem_Repeat 62620 62644 50 + . . scaffold1696 GLEAN mRNA 63416 63619 0.999905 + . ID=CGI_10003678; scaffold1696 TRF Tandem_Repeat 70005 70030 52 + . . scaffold1696 TRF Tandem_Repeat 72764 72815 68 + . . scaffold1696 TRF Tandem_Repeat 72766 72831 55 + . . scaffold1696 WUBlastX LINE_RTE-X 75715 76971 876 + . . scaffold1696 TRF Tandem_Repeat 77842 77901 120 + . . scaffold1696 WUBlastX LTR_DIRS 78791 79165 86 + . . scaffold1696 WUBlastX LTR_DIRS 79415 79813 165 + . . scaffold1696 WUBlastX LTR_DIRS 79771 80085 139 + . . scaffold1696 WUBlastX LTR_DIRS 80076 80690 201 + . . scaffold1697 GLEAN promoter 1 139 0.983491 + . ID=CGI_10007876; scaffold1697 GLEAN mRNA 140 13575 0.983491 + . ID=CGI_10007876; scaffold1697 WUBlastX LTR_Gypsy-Cigr 12451 13140 41 + . . scaffold1697 WUBlastX LTR_Copia 12856 13128 52 + . . scaffold1697 WUBlastX LTR_ERV1 12913 13116 53 + . . scaffold1697 TRF Tandem_Repeat 15627 15671 90 + . . scaffold1697 WUBlastX LINE_CR1 26394 27041 597 - . . scaffold1697 WUBlastX LINE_L2 26979 27122 29 - . . scaffold1697 WUBlastX LINE_CR1 27130 28818 661 - . . scaffold1697 WUBlastX LINE_L2 28387 28905 48 - . . scaffold1697 TRF Tandem_Repeat 35503 35543 64 + . . scaffold1697 GLEAN mRNA 53711 57479 0.992124 - . ID=CGI_10007877; scaffold1697 GLEAN promoter 57480 58479 0.992124 - . ID=CGI_10007877; scaffold1697 WUBlastX DNA_Crypton 58260 58361 21 + . . scaffold1697 WUBlastX DNA_Crypton 58417 58671 56 + . . scaffold1697 TRF Tandem_Repeat 60683 61008 503 + . . scaffold1697 TRF Tandem_Repeat 63542 63567 52 + . . scaffold1697 GLEAN mRNA 63752 73788 0.512292 - . ID=CGI_10007878; scaffold1697 TRF Tandem_Repeat 64296 64347 97 + . . scaffold1697 TRF Tandem_Repeat 67270 67316 69 + . . scaffold1697 GLEAN promoter 73789 74788 0.512292 - . ID=CGI_10007878; scaffold1697 GLEAN mRNA 89614 107881 0.999861 - . ID=CGI_10007879; scaffold1697 TRF Tandem_Repeat 106039 106102 128 + . . scaffold1697 TRF Tandem_Repeat 106096 106145 93 + . . scaffold1697 GLEAN promoter 107882 108881 0.999861 - . ID=CGI_10007879; scaffold1697 WUBlastX LINE_L1 112934 113080 75 + . . scaffold1697 WUBlastX LINE_L1 113083 113973 352 + . . scaffold1697 WUBlastX LINE_I 113969 114358 37 + . . scaffold1697 WUBlastX LINE_L1-Tx1 114032 114355 119 + . . scaffold1697 WUBlastX LINE_L1-Tx1 114363 115325 409 + . . scaffold1697 WUBlastX LINE_L1-Tx1 115319 115450 61 + . . scaffold1697 WUBlastX LINE_L1-Tx1 115340 115444 67 + . . scaffold1697 WUBlastX LINE_L1 115358 115444 86 + . . scaffold1697 WUBlastX LINE_L1-Tx1 115459 116337 547 + . . scaffold1697 WUBlastX LINE_L1-Tx1 116358 117779 337 + . . scaffold1697 WUBlastX LINE_L1-Tx1 116373 117572 369 + . . scaffold1697 GLEAN mRNA 118654 125058 0.999971 - . ID=CGI_10007880; scaffold1697 GLEAN promoter 125059 126058 0.999971 - . ID=CGI_10007880; scaffold1697 WUBlastX LTR_Ngaro 127076 127156 33 - . . scaffold1697 WUBlastX LTR_Ngaro 127833 127973 89 - . . scaffold1697 WUBlastX LTR_Ngaro 130374 130607 51 - . . scaffold1697 WUBlastX LTR_Ngaro 130592 130753 70 - . . scaffold1697 WUBlastX LTR_Ngaro 138860 139108 62 - . . scaffold1697 WUBlastX LTR_Ngaro 139317 139760 64 - . . scaffold1697 WUBlastX LTR_Ngaro 139464 140111 131 - . . scaffold1697 WUBlastX LTR_Ngaro 139485 139979 187 - . . scaffold1697 WUBlastX DNA_hAT-Ac 141834 142193 172 - . . scaffold1697 WUBlastX DNA_hAT-Ac 142252 143139 195 - . . scaffold1697 WUBlastX DNA_hAT-Ac 143130 143399 134 - . . scaffold1697 WUBlastX DNA_hAT-Ac 143160 143498 76 - . . scaffold1697 WUBlastX RC_Helitron 151104 151562 85 - . . scaffold1697 TRF Tandem_Repeat 155931 156139 164 + . . scaffold1697 TRF Tandem_Repeat 155935 156163 193 + . . scaffold1697 TRF Tandem_Repeat 157520 157884 143 + . . scaffold1697 TRF Tandem_Repeat 157520 157819 179 + . . scaffold1697 TRF Tandem_Repeat 157520 157690 163 + . . scaffold1697 TRF Tandem_Repeat 157543 157839 159 + . . scaffold1697 TRF Tandem_Repeat 157699 157898 107 + . . scaffold1697 GLEAN mRNA 159391 159765 0.558346 - . ID=CGI_10007881; scaffold1697 GLEAN promoter 159766 160765 0.558346 - . ID=CGI_10007881; scaffold1697 WUBlastX LINE_L1-Tx1 181675 181872 66 - . . scaffold1697 WUBlastX LINE_L1 181857 182366 196 - . . scaffold1697 WUBlastX LINE_L1 182359 182487 26 - . . scaffold1697 WUBlastX LINE_L1 182407 182487 52 - . . scaffold1697 WUBlastX LINE_L1-Tx1 182410 182514 47 - . . scaffold1697 GLEAN mRNA 183165 188731 0.999973 - . ID=CGI_10007882; scaffold1697 GLEAN promoter 188732 189731 0.999973 - . ID=CGI_10007882; scaffold1698 WUBlastX LINE_I 101 289 22 - . . scaffold1698 TRF Tandem_Repeat 5340 5383 54 + . . scaffold1698 WUBlastX LINE_RTE-X 7208 7741 126 - . . scaffold1698 WUBlastX LINE_RTE-X 7328 7831 70 - . . scaffold1698 TRF Tandem_Repeat 10239 10305 89 + . . scaffold1698 WUBlastX LINE_RTE-X 12125 12382 33 - . . scaffold1698 WUBlastX LINE_RTE-X 12164 12370 62 - . . scaffold1698 WUBlastX LINE_RTE-X 12209 12412 73 - . . scaffold1698 WUBlastX LINE_RTE-X 12224 12391 88 - . . scaffold1698 TRF Tandem_Repeat 15051 15645 579 + . . scaffold1698 TRF Tandem_Repeat 18957 18996 57 + . . scaffold1698 GLEAN mRNA 21540 26316 0.919138 - . ID=CGI_10019364; scaffold1698 TRF Tandem_Repeat 22748 22854 133 + . . scaffold1698 GLEAN promoter 26317 27316 0.919138 - . ID=CGI_10019364; scaffold1698 TRF Tandem_Repeat 36618 36675 116 + . . scaffold1698 TRF Tandem_Repeat 36825 36884 120 + . . scaffold1698 WUBlastX LTR_Gypsy 40602 40691 21 - . . scaffold1698 WUBlastX LTR_Gypsy 40836 41888 168 - . . scaffold1698 WUBlastX LTR_Gypsy 41052 41852 331 - . . scaffold1698 WUBlastX LTR_Gypsy 41410 43479 691 - . . scaffold1698 WUBlastX LTR_Gypsy 43562 43717 27 - . . scaffold1698 WUBlastX LTR_Gypsy 43901 43945 25 - . . scaffold1698 WUBlastX LTR_Gypsy 44184 44291 21 - . . scaffold1698 WUBlastX LTR_Gypsy 44268 44375 21 - . . scaffold1698 WUBlastX LTR_Gypsy 49947 50117 35 - . . scaffold1698 WUBlastX LTR_Gypsy 50102 50422 68 - . . scaffold1698 TRF Tandem_Repeat 50920 50951 64 + . . scaffold1698 GLEAN promoter 54092 55091 0.688406 + . ID=CGI_10019365; scaffold1698 TRF Tandem_Repeat 54240 54306 134 + . . scaffold1698 GLEAN mRNA 55092 68406 0.688406 + . ID=CGI_10019365; scaffold1698 TRF Tandem_Repeat 67272 67320 89 + . . scaffold1698 WUBlastX LTR_Copia 75365 75445 27 - . . scaffold1698 WUBlastX LTR_Gypsy 75398 76990 413 - . . scaffold1698 WUBlastX LTR_Gypsy 75518 76834 639 - . . scaffold1698 WUBlastX LTR_Gypsy 76972 78702 563 - . . scaffold1698 WUBlastX LTR_Gypsy 77263 79149 969 - . . scaffold1698 WUBlastX LTR_Gypsy-Cigr 77263 78810 990 - . . scaffold1698 GLEAN mRNA 81014 81520 0.994893 - . ID=CGI_10019366; scaffold1698 WUBlastX LTR_Gypsy 81047 81451 53 - . . scaffold1698 GLEAN promoter 81521 82520 0.994893 - . ID=CGI_10019366; scaffold1698 WUBlastX LTR_Gypsy-Cigr 81641 82180 34 - . . scaffold1698 WUBlastX LTR_Gypsy-Cigr 81737 82225 67 - . . scaffold1698 GLEAN mRNA 82772 83140 0.999347 - . ID=CGI_10019367; scaffold1698 GLEAN promoter 83141 84140 0.999347 - . ID=CGI_10019367; scaffold1698 TRF Tandem_Repeat 93064 93097 68 + . . scaffold1698 TRF Tandem_Repeat 98347 98456 96 + . . scaffold1698 TRF Tandem_Repeat 98414 98458 72 + . . scaffold1698 GLEAN mRNA 102826 106120 0.999735 - . ID=CGI_10019368; scaffold1698 GLEAN promoter 106121 107120 0.999735 - . ID=CGI_10019368; scaffold1698 GLEAN mRNA 108193 118621 0.527953 - . ID=CGI_10019369; scaffold1698 TRF Tandem_Repeat 108329 108508 252 + . . scaffold1698 TRF Tandem_Repeat 108329 108508 252 + . . scaffold1698 GLEAN promoter 114530 115529 0.999999 + . ID=CGI_10019370; scaffold1698 GLEAN mRNA 115530 127809 0.999999 + . ID=CGI_10019370; scaffold1698 GLEAN promoter 118622 119621 0.527953 - . ID=CGI_10019369; scaffold1698 WUBlastX LINE_CR1-L2 122879 123010 69 + . . scaffold1698 WUBlastX LINE_CR1-L2 122879 122986 69 + . . scaffold1698 TRF Tandem_Repeat 123134 123165 55 + . . scaffold1698 TRF Tandem_Repeat 123380 124466 1348 + . . scaffold1698 WUBlastX LINE_CR1-L2 125050 125613 91 + . . scaffold1698 WUBlastX LINE_L2 125170 125613 102 + . . scaffold1698 TRF Tandem_Repeat 127931 127982 104 + . . scaffold1698 GLEAN mRNA 129183 137081 1 - . ID=CGI_10019371; scaffold1698 TRF Tandem_Repeat 131469 131526 116 + . . scaffold1698 GLEAN promoter 137082 138081 1 - . ID=CGI_10019371; scaffold1698 GLEAN mRNA 141288 144455 0.999999 - . ID=CGI_10019372; scaffold1698 GLEAN promoter 144456 145455 0.999999 - . ID=CGI_10019372; scaffold1698 GLEAN promoter 148968 149967 1 + . ID=CGI_10019373; scaffold1698 GLEAN mRNA 149968 153094 1 + . ID=CGI_10019373; scaffold1698 GLEAN promoter 153635 154634 1 + . ID=CGI_10019374; scaffold1698 GLEAN mRNA 154635 155503 1 + . ID=CGI_10019374; scaffold1698 TRF Tandem_Repeat 157318 157366 89 + . . scaffold1698 GLEAN promoter 158386 159385 0.810357 + . ID=CGI_10019375; scaffold1698 GLEAN mRNA 159386 169195 0.810357 + . ID=CGI_10019375; scaffold1698 TRF Tandem_Repeat 170517 170546 51 + . . scaffold1698 TRF Tandem_Repeat 172337 172577 218 + . . scaffold1698 TRF Tandem_Repeat 172337 172592 243 + . . scaffold1698 TRF Tandem_Repeat 172576 172794 119 + . . scaffold1698 TRF Tandem_Repeat 172602 172794 244 + . . scaffold1698 TRF Tandem_Repeat 178618 178745 73 + . . scaffold1698 TRF Tandem_Repeat 190440 191350 962 + . . scaffold1698 TRF Tandem_Repeat 200173 200214 75 + . . scaffold1698 TRF Tandem_Repeat 203863 203897 54 + . . scaffold1698 TRF Tandem_Repeat 209258 209284 54 + . . scaffold1698 WUBlastX LINE_L2 209370 209546 39 + . . scaffold1698 WUBlastX LINE_L2 210243 210341 20 + . . scaffold1698 WUBlastX LINE_L2 211088 211456 70 + . . scaffold1698 WUBlastX LINE_L2 211447 211788 41 + . . scaffold1698 WUBlastX LINE_L2 211465 211590 62 + . . scaffold1698 WUBlastX LINE_L2 211486 211629 53 + . . scaffold1698 WUBlastX LINE_L2 211486 211596 73 + . . scaffold1698 WUBlastX DNA_IS4EU 217187 217873 90 - . . scaffold1698 WUBlastX DNA_IS4EU 217271 218221 37 - . . scaffold1698 WUBlastX DNA_IS4EU 217438 217593 97 - . . scaffold1698 WUBlastX DNA_Harbinger 223438 223584 44 + . . scaffold1698 WUBlastX DNA_Harbinger 225069 225266 61 - . . scaffold1698 WUBlastX DNA_Harbinger 225406 225603 117 - . . scaffold1698 WUBlastX DNA_Harbinger 225639 225776 20 - . . scaffold1698 WUBlastX DNA_Harbinger 225666 225806 51 - . . scaffold1698 WUBlastX DNA_Harbinger 225690 225776 53 - . . scaffold1698 TRF Tandem_Repeat 225895 225931 74 + . . scaffold1698 WUBlastX DNA_Harbinger 225939 226079 20 - . . scaffold1698 WUBlastX DNA_Harbinger 225963 226112 56 - . . scaffold1698 WUBlastX DNA_Harbinger 225963 226085 82 - . . scaffold1698 WUBlastX DNA_Harbinger 226595 227005 99 - . . scaffold1698 WUBlastX DNA_Harbinger 226625 226969 131 - . . scaffold1698 TRF Tandem_Repeat 227827 227897 142 + . . scaffold1698 TRF Tandem_Repeat 239838 240485 804 + . . scaffold1698 WUBlastX LINE_L1-Tx1 244565 245284 33 + . . scaffold1698 WUBlastX LINE_L1-Tx1 244808 245302 89 + . . scaffold1698 GLEAN mRNA 250086 256200 0.248615 - . ID=CGI_10019377; scaffold1698 GLEAN promoter 256201 257200 0.248615 - . ID=CGI_10019377; scaffold1698 TRF Tandem_Repeat 257196 257252 114 + . . scaffold1698 GLEAN mRNA 259252 262295 0.999985 - . ID=CGI_10019378; scaffold1698 GLEAN promoter 262296 263295 0.999985 - . ID=CGI_10019378; scaffold1698 GLEAN mRNA 269548 275248 0.999473 - . ID=CGI_10019379; scaffold1698 TRF Tandem_Repeat 271626 271707 164 + . . scaffold1698 GLEAN promoter 275249 276248 0.999473 - . ID=CGI_10019379; scaffold1698 GLEAN mRNA 275305 279445 0.999797 - . ID=CGI_10019380; scaffold1698 GLEAN promoter 279446 280445 0.999797 - . ID=CGI_10019380; scaffold1698 TRF Tandem_Repeat 288773 288810 58 + . . scaffold1698 TRF Tandem_Repeat 302402 302468 61 + . . scaffold1698 GLEAN mRNA 314056 316058 0.579779 - . ID=CGI_10019381; scaffold1698 GLEAN promoter 316059 317058 0.579779 - . ID=CGI_10019381; scaffold1698 TRF Tandem_Repeat 316386 316758 187 + . . scaffold1698 TRF Tandem_Repeat 316386 316758 155 + . . scaffold1698 TRF Tandem_Repeat 316404 316756 208 + . . scaffold1698 TRF Tandem_Repeat 316465 316525 53 + . . scaffold1698 WUBlastX DNA_TcMar-Marin 332400 333065 341 + . . scaffold1698 WUBlastX DNA_TcMar-Marin 333256 333660 233 + . . scaffold1698 TRF Tandem_Repeat 334811 335588 945 + . . scaffold1698 WUBlastX DNA_Sola 337589 337852 43 - . . scaffold1698 WUBlastX DNA_Sola 337655 337855 46 - . . scaffold1698 WUBlastX DNA_Sola 337700 337840 48 - . . scaffold1698 WUBlastX DNA_Sola 337848 338345 42 - . . scaffold1698 WUBlastX DNA_Sola 337863 338195 72 - . . scaffold1698 TRF Tandem_Repeat 340166 340199 50 + . . scaffold1698 TRF Tandem_Repeat 340347 340381 52 + . . scaffold1698 TRF Tandem_Repeat 340394 340481 126 + . . scaffold1698 GLEAN promoter 341252 342251 0.999911 + . ID=CGI_10019382; scaffold1698 GLEAN mRNA 342252 342455 0.999911 + . ID=CGI_10019382; scaffold1698 TRF Tandem_Repeat 347696 347731 72 + . . scaffold1698 WUBlastX DNA_Merlin 349394 349858 25 + . . scaffold1698 WUBlastX RC_Helitron 356243 357307 196 + . . scaffold1698 WUBlastX RC_Helitron 356243 356743 287 + . . scaffold1698 WUBlastX RC_Helitron 356951 357322 205 + . . scaffold1698 WUBlastX RC_Helitron 357032 357394 234 + . . scaffold1698 WUBlastX RC_Helitron 357313 358317 356 + . . scaffold1698 GLEAN mRNA 366380 366833 0.451984 - . ID=CGI_10019383; scaffold1698 GLEAN promoter 366834 367833 0.451984 - . ID=CGI_10019383; scaffold1698 WUBlastX RC_Helitron 368973 369323 46 - . . scaffold1698 TRF Tandem_Repeat 371445 372401 1345 + . . scaffold1698 TRF Tandem_Repeat 372432 372467 54 + . . scaffold1698 WUBlastX LTR_DIRS 372572 372799 44 + . . scaffold1698 WUBlastX LTR_DIRS? 372623 372832 35 + . . scaffold1698 WUBlastX LTR_DIRS 372889 373008 20 + . . scaffold1698 WUBlastX LTR_DIRS? 373017 373124 28 + . . scaffold1698 WUBlastX DNA_hAT-hATw 374391 374570 42 - . . scaffold1698 WUBlastX DNA_hAT-hATw 374421 374570 58 - . . scaffold1698 WUBlastX DNA_hAT-hATw 374579 374851 51 - . . scaffold1698 GLEAN mRNA 375155 376932 0.698033 - . ID=CGI_10019384; scaffold1698 GLEAN promoter 376933 377932 0.698033 - . ID=CGI_10019384; scaffold1698 TRF Tandem_Repeat 384720 384765 58 + . . scaffold1698 GLEAN promoter 385388 386387 0.549917 + . ID=CGI_10019385; scaffold1698 GLEAN mRNA 386388 395042 0.549917 + . ID=CGI_10019385; scaffold1698 WUBlastX DNA_Harbinger 389458 389610 62 + . . scaffold1698 TRF Tandem_Repeat 399076 399194 73 + . . scaffold1698 TRF Tandem_Repeat 405279 405308 51 + . . scaffold1698 WUBlastX DNA_TcMar-Fot1 421985 422461 29 + . . scaffold1698 WUBlastX DNA_TcMar-Fot1 422201 422659 36 + . . scaffold1698 WUBlastX DNA_TcMar-Fot1 422634 422927 77 + . . scaffold1698 WUBlastX DNA_TcMar-Fot1 422694 422945 96 + . . scaffold1698 GLEAN promoter 423726 424725 0.763562 + . ID=CGI_10019386; scaffold1698 GLEAN mRNA 424726 430365 0.763562 + . ID=CGI_10019386; scaffold1698 TRF Tandem_Repeat 429484 429513 60 + . . scaffold1698 GLEAN mRNA 433576 473169 0.953884 - . ID=CGI_10019387; scaffold1698 TRF Tandem_Repeat 453437 453463 54 + . . scaffold1698 TRF Tandem_Repeat 453551 453584 68 + . . scaffold1698 TRF Tandem_Repeat 457366 457610 427 + . . scaffold1698 TRF Tandem_Repeat 462043 462095 88 + . . scaffold1698 TRF Tandem_Repeat 467309 467456 197 + . . scaffold1698 TRF Tandem_Repeat 467740 468119 627 + . . scaffold1698 TRF Tandem_Repeat 470294 470770 226 + . . scaffold1698 TRF Tandem_Repeat 470309 470456 109 + . . scaffold1698 TRF Tandem_Repeat 470332 470647 120 + . . scaffold1698 TRF Tandem_Repeat 470450 470684 362 + . . scaffold1698 TRF Tandem_Repeat 470567 470770 211 + . . scaffold1698 TRF Tandem_Repeat 472034 472068 61 + . . scaffold1698 GLEAN promoter 473170 474169 0.953884 - . ID=CGI_10019387; scaffold1698 GLEAN promoter 476312 477311 0.998792 + . ID=CGI_10019388; scaffold1698 TRF Tandem_Repeat 476441 476562 72 + . . scaffold1698 GLEAN mRNA 477312 489558 0.998792 + . ID=CGI_10019388; scaffold1698 TRF Tandem_Repeat 480274 480527 273 + . . scaffold1698 TRF Tandem_Repeat 480274 480530 279 + . . scaffold1698 TRF Tandem_Repeat 482863 483685 928 + . . scaffold1698 TRF Tandem_Repeat 486281 486768 442 + . . scaffold1698 TRF Tandem_Repeat 489979 490013 61 + . . scaffold1698 TRF Tandem_Repeat 498212 498356 60 + . . scaffold1698 TRF Tandem_Repeat 499334 500100 1028 + . . scaffold1698 TRF Tandem_Repeat 500212 500237 52 + . . scaffold1698 TRF Tandem_Repeat 500746 500791 65 + . . scaffold1698 TRF Tandem_Repeat 502675 503228 885 + . . scaffold1698 GLEAN promoter 502808 503807 0.638313 + . ID=CGI_10019389; scaffold1698 GLEAN mRNA 503808 514720 0.638313 + . ID=CGI_10019389; scaffold1698 TRF Tandem_Repeat 504784 504966 296 + . . scaffold1698 TRF Tandem_Repeat 504807 504966 212 + . . scaffold1698 TRF Tandem_Repeat 505533 505578 92 + . . scaffold1698 WUBlastX DNA_Sola 509319 509702 47 + . . scaffold1698 WUBlastX DNA_Sola 509685 509828 68 + . . scaffold1698 WUBlastX DNA_Sola 510429 510563 30 + . . scaffold1698 TRF Tandem_Repeat 510885 510927 86 + . . scaffold1698 GLEAN promoter 513724 514723 0.995153 + . ID=CGI_10019390; scaffold1698 GLEAN mRNA 514724 532235 0.995153 + . ID=CGI_10019390; scaffold1698 TRF Tandem_Repeat 518164 518280 92 + . . scaffold1698 TRF Tandem_Repeat 518413 518638 136 + . . scaffold1698 TRF Tandem_Repeat 518453 518649 218 + . . scaffold1698 TRF Tandem_Repeat 524181 524297 171 + . . scaffold1698 TRF Tandem_Repeat 524184 524311 143 + . . scaffold1698 TRF Tandem_Repeat 525768 525823 112 + . . scaffold1698 TRF Tandem_Repeat 527338 527442 93 + . . scaffold1698 TRF Tandem_Repeat 535521 535839 516 + . . scaffold1698 TRF Tandem_Repeat 535523 535848 341 + . . scaffold1698 TRF Tandem_Repeat 536510 536770 308 + . . scaffold1698 TRF Tandem_Repeat 536518 536748 229 + . . scaffold1698 TRF Tandem_Repeat 536519 536772 332 + . . scaffold1698 TRF Tandem_Repeat 536971 537071 157 + . . scaffold1698 GLEAN promoter 537447 538446 1 + . ID=CGI_10019391; scaffold1698 GLEAN mRNA 538447 544759 1 + . ID=CGI_10019391; scaffold1698 TRF Tandem_Repeat 540817 541564 912 + . . scaffold1698 GLEAN mRNA 546897 554796 1 - . ID=CGI_10019392; scaffold1698 GLEAN promoter 554797 555796 1 - . ID=CGI_10019392; scaffold1698 GLEAN mRNA 555176 595908 0.182915 - . ID=CGI_10019393; scaffold1698 WUBlastX LINE_RTE-X 555188 556096 57 + . . scaffold1698 WUBlastX LINE_RTE-X 555503 556090 67 + . . scaffold1698 WUBlastX LINE_RTE-X 556465 556584 22 + . . scaffold1698 WUBlastX LINE_RTE-X 556620 556757 43 + . . scaffold1698 WUBlastX LINE_RTE-X 556772 557020 27 + . . scaffold1698 WUBlastX LINE_Penelope 558674 559171 59 - . . scaffold1698 WUBlastX LINE_Penelope 558782 559057 83 - . . scaffold1698 WUBlastX LINE_Penelope 558800 559120 82 - . . scaffold1698 GLEAN promoter 595909 595941 0.182915 - . ID=CGI_10019393; scaffold1699 GLEAN mRNA 922 8498 0.999395 - . ID=CGI_10008900; scaffold1699 GLEAN promoter 8499 9498 0.999395 - . ID=CGI_10008900; scaffold1699 WUBlastX LINE_RTE-X 10093 10527 64 - . . scaffold1699 WUBlastX LINE_RTE-X 10219 10530 90 - . . scaffold1699 TRF Tandem_Repeat 11198 11255 116 + . . scaffold1699 GLEAN mRNA 11310 13805 0.999675 - . ID=CGI_10008901; scaffold1699 GLEAN promoter 13806 14805 0.999675 - . ID=CGI_10008901; scaffold1699 WUBlastX LINE_RTE-X 16751 16930 21 + . . scaffold1699 WUBlastX LINE_RTE-X 16784 16960 48 + . . scaffold1699 WUBlastX LINE_RTE-X 16802 16936 53 + . . scaffold1699 WUBlastX LINE_RTE-X 17055 17216 33 + . . scaffold1699 WUBlastX LINE_RTE-X 17707 17958 58 + . . scaffold1699 WUBlastX LINE_RTE-X 17758 17883 69 + . . scaffold1699 GLEAN promoter 18360 19359 0.990797 + . ID=CGI_10008902; scaffold1699 TRF Tandem_Repeat 18881 18925 90 + . . scaffold1699 GLEAN promoter 19130 20129 0.999984 + . ID=CGI_10008903; scaffold1699 GLEAN mRNA 19360 19881 0.990797 + . ID=CGI_10008902; scaffold1699 GLEAN mRNA 20130 20498 0.999984 + . ID=CGI_10008903; scaffold1699 GLEAN mRNA 23428 28713 0.999676 - . ID=CGI_10008904; scaffold1699 GLEAN promoter 28714 29713 0.999676 - . ID=CGI_10008904; scaffold1699 WUBlastX LINE_R2-Hero 29207 29566 62 - . . scaffold1699 GLEAN mRNA 29933 36488 0.544498 - . ID=CGI_10008905; scaffold1699 GLEAN promoter 36489 37488 0.544498 - . ID=CGI_10008905; scaffold1699 GLEAN promoter 49768 50767 0.99996 + . ID=CGI_10008906; scaffold1699 TRF Tandem_Repeat 49957 50006 75 + . . scaffold1699 GLEAN mRNA 50768 55559 0.99996 + . ID=CGI_10008906; scaffold1699 WUBlastX LTR_Gypsy 57307 57504 28 + . . scaffold1699 WUBlastX LTR_Gypsy 57334 57465 65 + . . scaffold1699 WUBlastX LTR_Gypsy 57358 57501 44 + . . scaffold1699 WUBlastX LTR_Gypsy 57519 57893 50 + . . scaffold1699 WUBlastX LTR_Gypsy 57771 58313 75 + . . scaffold1699 WUBlastX LTR_Gypsy 57876 58721 197 + . . scaffold1699 WUBlastX LTR_Gypsy 57876 58574 246 + . . scaffold1699 WUBlastX LTR_Gypsy 57894 58385 335 + . . scaffold1699 WUBlastX LTR_Gypsy 58360 58923 51 + . . scaffold1699 TRF Tandem_Repeat 67741 67791 57 + . . scaffold1699 TRF Tandem_Repeat 67741 67791 57 + . . scaffold1699 TRF Tandem_Repeat 67754 67791 58 + . . scaffold1699 GLEAN mRNA 71738 73591 1 - . ID=CGI_10008907; scaffold1699 GLEAN promoter 73544 74543 0.978029 + . ID=CGI_10008908; scaffold1699 GLEAN promoter 73592 74591 1 - . ID=CGI_10008907; scaffold1699 GLEAN mRNA 74544 74909 0.978029 + . ID=CGI_10008908; scaffold1699 GLEAN mRNA 80841 82088 0.593272 - . ID=CGI_10008909; scaffold1699 GLEAN promoter 82089 83088 0.593272 - . ID=CGI_10008909; scaffold1699 GLEAN promoter 85473 86472 0.429013 + . ID=CGI_10008911; scaffold1699 GLEAN mRNA 85837 86073 0.999372 - . ID=CGI_10008910; scaffold1699 GLEAN promoter 86074 87073 0.999372 - . ID=CGI_10008910; scaffold1699 GLEAN mRNA 86473 88248 0.429013 + . ID=CGI_10008911; scaffold1699 TRF Tandem_Repeat 89898 90233 193 + . . scaffold1699 TRF Tandem_Repeat 90004 90228 177 + . . scaffold1699 GLEAN mRNA 93291 94535 0.996497 - . ID=CGI_10008912; scaffold1699 GLEAN promoter 94536 95535 0.996497 - . ID=CGI_10008912; scaffold1699 TRF Tandem_Repeat 95191 95313 59 + . . scaffold1699 GLEAN mRNA 95422 96540 1 - . ID=CGI_10008913; scaffold1699 GLEAN promoter 96541 97540 1 - . ID=CGI_10008913; scaffold1699 WUBlastX LTR_Pao 103588 103800 68 - . . scaffold1699 TRF Tandem_Repeat 108593 110010 1892 + . . scaffold1699 TRF Tandem_Repeat 116227 116260 68 + . . scaffold1699 TRF Tandem_Repeat 119968 120430 364 + . . scaffold1699 TRF Tandem_Repeat 119968 120474 434 + . . scaffold1699 TRF Tandem_Repeat 119968 120474 355 + . . scaffold1699 WUBlastX LINE_Penelope 124516 125019 45 + . . scaffold1699 WUBlastX LINE_L1-Tx1 134664 135353 87 + . . scaffold1699 TRF Tandem_Repeat 135408 135465 57 + . . scaffold1699 TRF Tandem_Repeat 135414 135468 74 + . . scaffold1699 TRF Tandem_Repeat 136426 136484 118 + . . scaffold1699 TRF Tandem_Repeat 148804 148852 89 + . . scaffold1699 TRF Tandem_Repeat 149883 149936 90 + . . scaffold1699 GLEAN promoter 157881 158880 1 + . ID=CGI_10008914; scaffold1699 GLEAN mRNA 158881 161145 1 + . ID=CGI_10008914; scaffold1699 TRF Tandem_Repeat 186364 186601 392 + . . scaffold1699 TRF Tandem_Repeat 188926 189091 287 + . . scaffold1699 TRF Tandem_Repeat 190023 190240 153 + . . scaffold1699 TRF Tandem_Repeat 190023 190134 152 + . . scaffold1699 TRF Tandem_Repeat 190285 190381 98 + . . scaffold1699 TRF Tandem_Repeat 192900 192962 56 + . . scaffold1699 GLEAN promoter 193406 194405 1 + . ID=CGI_10008915; scaffold1699 TRF Tandem_Repeat 193575 193643 138 + . . scaffold1699 GLEAN mRNA 194406 194720 1 + . ID=CGI_10008915; scaffold1699 WUBlastX DNA_PiggyBac 195479 195775 86 + . . scaffold1699 WUBlastX DNA_PiggyBac 195560 195775 123 + . . scaffold1699 WUBlastX DNA_PiggyBac 195680 195802 79 + . . scaffold1699 WUBlastX DNA_PiggyBac 196234 196365 63 + . . scaffold1699 WUBlastX DNA_PiggyBac 196748 196930 77 + . . scaffold1699 WUBlastX DNA_PiggyBac 197529 197639 77 + . . scaffold1699 WUBlastX DNA_PiggyBac 197529 197747 36 + . . scaffold1699 WUBlastX DNA_PiggyBac 197541 197699 63 + . . scaffold1699 WUBlastX DNA_PiggyBac 198110 198433 62 + . . scaffold1699 WUBlastX DNA_PiggyBac 198110 198346 87 + . . scaffold1699 WUBlastX DNA_PiggyBac 198125 198316 125 + . . scaffold1699 WUBlastX DNA_PiggyBac 198400 198936 144 + . . scaffold1699 WUBlastX DNA_PiggyBac 198481 198936 150 + . . scaffold17 TRF Tandem_Repeat 112 155 88 + . . scaffold17 WUBlastX LTR_Ngaro 3465 4367 401 - . . scaffold17 WUBlastX LTR_Ngaro 4361 4501 78 - . . scaffold17 WUBlastX LTR_Ngaro 4513 4959 285 - . . scaffold17 WUBlastX LTR_Ngaro 4881 5189 171 - . . scaffold17 WUBlastX LTR_Ngaro 4899 5279 97 - . . scaffold170 TRF Tandem_Repeat 402 436 52 + . . scaffold170 TRF Tandem_Repeat 448 1250 1114 + . . scaffold170 GLEAN promoter 957 1956 0.558378 + . ID=CGI_10007430; scaffold170 GLEAN mRNA 1957 29299 0.558378 + . ID=CGI_10007430; scaffold170 TRF Tandem_Repeat 17169 17201 57 + . . scaffold170 TRF Tandem_Repeat 17520 18370 1341 + . . scaffold170 TRF Tandem_Repeat 25731 25788 98 + . . scaffold170 GLEAN mRNA 33602 72151 0.952643 - . ID=CGI_10007431; scaffold170 TRF Tandem_Repeat 57872 57918 94 + . . scaffold170 WUBlastX DNA_MuDR 69232 69495 58 - . . scaffold170 TRF Tandem_Repeat 69821 69849 58 + . . scaffold170 TRF Tandem_Repeat 71601 71653 61 + . . scaffold170 GLEAN promoter 72056 73055 1 + . ID=CGI_10007432; scaffold170 GLEAN promoter 72152 73151 0.952643 - . ID=CGI_10007431; scaffold170 GLEAN mRNA 73056 73541 1 + . ID=CGI_10007432; scaffold170 TRF Tandem_Repeat 76640 76687 64 + . . scaffold170 GLEAN mRNA 76710 77096 1 - . ID=CGI_10007433; scaffold170 GLEAN promoter 77097 78096 1 - . ID=CGI_10007433; scaffold170 GLEAN mRNA 77582 89661 0.728463 - . ID=CGI_10007434; scaffold170 TRF Tandem_Repeat 84920 85047 114 + . . scaffold170 TRF Tandem_Repeat 84974 85097 73 + . . scaffold170 GLEAN promoter 89662 90661 0.728463 - . ID=CGI_10007434; scaffold170 TRF Tandem_Repeat 92132 92229 74 + . . scaffold170 GLEAN mRNA 100437 100712 0.611557 - . ID=CGI_10007435; scaffold170 GLEAN promoter 100713 101712 0.611557 - . ID=CGI_10007435; scaffold170 WUBlastX LINE_RTE-X 107500 107751 105 + . . scaffold170 WUBlastX LINE_RTE-X 107545 107883 63 + . . scaffold170 WUBlastX LINE_RTE-X 107554 107811 85 + . . scaffold170 WUBlastX LINE_RTE-X 107781 107930 51 + . . scaffold170 WUBlastX LINE_RTE-X 107909 108076 91 + . . scaffold170 WUBlastX LINE_RTE-X 107912 108193 61 + . . scaffold170 WUBlastX LINE_RTE-X 107918 108121 84 + . . scaffold170 WUBlastX DNA_Sola 114395 116068 251 + . . scaffold170 WUBlastX DNA_Sola 114836 116086 383 + . . scaffold170 WUBlastX DNA_Sola 114923 116557 277 + . . scaffold170 WUBlastX DNA_Sola 116264 116611 131 + . . scaffold170 WUBlastX LTR_Gypsy 120077 120217 68 + . . scaffold170 WUBlastX LTR_Gypsy 120190 120621 106 + . . scaffold170 WUBlastX LTR_Gypsy 120277 120810 37 + . . scaffold170 WUBlastX LTR_Gypsy 121036 121380 85 - . . scaffold170 WUBlastX LTR_Gypsy-Cigr 121120 121377 187 - . . scaffold170 WUBlastX LTR_Gypsy 121120 121587 109 - . . scaffold170 WUBlastX LINE_RTE-X 123259 123525 50 + . . scaffold170 WUBlastX DNA_Harbinger 123929 124087 43 + . . scaffold170 WUBlastX DNA_Harbinger 124223 124456 132 + . . scaffold170 WUBlastX DNA_Kolobok 127675 127728 24 + . . scaffold170 TRF Tandem_Repeat 128493 128536 52 + . . scaffold170 WUBlastX DNA_Kolobok 128587 128709 58 + . . scaffold170 WUBlastX LTR_Pao 130107 130499 95 - . . scaffold170 WUBlastX LTR_Pao 130176 130499 128 - . . scaffold170 WUBlastX LTR_Pao 130269 130499 129 - . . scaffold170 WUBlastX LTR_Pao 130320 130499 135 - . . scaffold170 WUBlastX LTR_Pao 130499 130945 231 - . . scaffold170 WUBlastX LTR_Pao 130502 130849 263 - . . scaffold170 WUBlastX DNA_Kolobok 132613 132813 40 - . . scaffold170 WUBlastX DNA_Kolobok 132676 132795 56 - . . scaffold170 WUBlastX DNA_Kolobok 133076 133246 35 - . . scaffold170 GLEAN mRNA 133462 133674 0.617893 - . ID=CGI_10007436; scaffold170 GLEAN promoter 133675 134674 0.617893 - . ID=CGI_10007436; scaffold170 TRF Tandem_Repeat 134922 134972 52 + . . scaffold170 TRF Tandem_Repeat 137226 137804 869 + . . scaffold170 TRF Tandem_Repeat 150347 150391 90 + . . scaffold170 WUBlastX LTR_Copia 154279 154821 82 - . . scaffold170 TRF Tandem_Repeat 155607 155675 122 + . . scaffold170 WUBlastX LTR_Ngaro 157586 157768 29 - . . scaffold170 WUBlastX LTR_Ngaro 158415 158681 116 - . . scaffold170 WUBlastX LTR_Ngaro 158659 158973 107 - . . scaffold170 WUBlastX LTR_Ngaro 181001 181141 66 - . . scaffold1700 GLEAN promoter 2279 3278 0.943718 + . ID=CGI_10012800; scaffold1700 GLEAN mRNA 3279 10052 0.943718 + . ID=CGI_10012800; scaffold1700 WUBlastX DNA_Academ 7783 7992 77 + . . scaffold1700 WUBlastX DNA_Academ 8019 8993 354 + . . scaffold1700 WUBlastX DNA_Academ 8947 9732 390 + . . scaffold1700 WUBlastX DNA_Academ 9852 10031 43 + . . scaffold1700 WUBlastX DNA_Academ 10028 11089 531 + . . scaffold1700 WUBlastX DNA_Academ 10028 11290 357 + . . scaffold1700 WUBlastX DNA_Academ 11248 11412 58 + . . scaffold1700 WUBlastX DNA_Academ 11318 11890 190 + . . scaffold1700 WUBlastX DNA_Academ 11489 11920 201 + . . scaffold1700 WUBlastX LINE_RTE-X 20524 20787 22 - . . scaffold1700 WUBlastX LINE_RTE-X 23307 23501 28 + . . scaffold1700 WUBlastX LINE_CR1-L2 25495 25575 26 + . . scaffold1700 WUBlastX LINE_CR1-L2 25599 25706 24 + . . scaffold1700 WUBlastX LINE_CR1-L2 25896 26027 46 + . . scaffold1700 GLEAN mRNA 36634 37104 0.618186 - . ID=CGI_10012801; scaffold1700 GLEAN promoter 37105 38104 0.618186 - . ID=CGI_10012801; scaffold1700 TRF Tandem_Repeat 43505 43619 101 + . . scaffold1700 WUBlastX LTR_ERV1 53583 54344 118 + . . scaffold1700 WUBlastX DNA_Maverick 53871 54527 87 + . . scaffold1700 WUBlastX LTR_Gypsy 53943 54341 125 + . . scaffold1700 WUBlastX LTR_Gypsy 53949 54647 65 + . . scaffold1700 WUBlastX LTR_Gypsy 53949 54782 22 + . . scaffold1700 WUBlastX LTR_Gypsy 55310 55417 21 + . . scaffold1700 WUBlastX LTR_Gypsy 55501 55623 32 + . . scaffold1700 WUBlastX LINE_Penelope 55579 56412 83 + . . scaffold1700 WUBlastX LINE_Penelope 56421 56759 74 + . . scaffold1700 WUBlastX LINE_Penelope 56472 56813 95 + . . scaffold1700 TRF Tandem_Repeat 65739 66532 1110 + . . scaffold1700 WUBlastX DNA_TcMar-Tc1 69729 69800 37 - . . scaffold1700 WUBlastX DNA_TcMar-Tc1 69760 70629 212 - . . scaffold1700 WUBlastX DNA_TcMar-Tc1 70581 70775 58 - . . scaffold1700 TRF Tandem_Repeat 100088 100906 1086 + . . scaffold1700 WUBlastX LINE_L1 109118 109429 69 + . . scaffold1700 WUBlastX LINE_L1-Tx1 109172 109441 87 + . . scaffold1700 TRF Tandem_Repeat 115085 115225 120 + . . scaffold1700 TRF Tandem_Repeat 116884 116997 108 + . . scaffold1700 GLEAN mRNA 118810 124667 0.988952 - . ID=CGI_10012802; scaffold1700 TRF Tandem_Repeat 119273 120175 1455 + . . scaffold1700 GLEAN promoter 124668 125667 0.988952 - . ID=CGI_10012802; scaffold1700 TRF Tandem_Repeat 130937 131038 159 + . . scaffold1700 TRF Tandem_Repeat 130937 131038 123 + . . scaffold1700 TRF Tandem_Repeat 131052 132196 1764 + . . scaffold1700 GLEAN promoter 144420 145419 0.593391 + . ID=CGI_10012803; scaffold1700 GLEAN mRNA 145420 146070 0.593391 + . ID=CGI_10012803; scaffold1700 GLEAN mRNA 153010 163776 0.924571 - . ID=CGI_10012804; scaffold1700 TRF Tandem_Repeat 156953 157019 59 + . . scaffold1700 GLEAN promoter 163777 164776 0.924571 - . ID=CGI_10012804; scaffold1700 TRF Tandem_Repeat 166000 166042 86 + . . scaffold1700 GLEAN mRNA 172663 178582 0.717817 - . ID=CGI_10012805; scaffold1700 GLEAN promoter 178583 179582 0.717817 - . ID=CGI_10012805; scaffold1700 TRF Tandem_Repeat 201657 201981 453 + . . scaffold1700 TRF Tandem_Repeat 209421 209464 65 + . . scaffold1700 TRF Tandem_Repeat 221152 221213 117 + . . scaffold1700 TRF Tandem_Repeat 221228 221260 50 + . . scaffold1700 TRF Tandem_Repeat 244193 244299 71 + . . scaffold1700 TRF Tandem_Repeat 244456 244721 245 + . . scaffold1700 TRF Tandem_Repeat 252089 252774 857 + . . scaffold1700 TRF Tandem_Repeat 254027 254160 245 + . . scaffold1700 TRF Tandem_Repeat 262273 262318 92 + . . scaffold1700 GLEAN promoter 275061 276060 0.999999 + . ID=CGI_10012806; scaffold1700 GLEAN mRNA 276061 277284 0.999999 + . ID=CGI_10012806; scaffold1700 GLEAN mRNA 289308 290331 0.990976 - . ID=CGI_10012807; scaffold1700 GLEAN promoter 290332 291331 0.990976 - . ID=CGI_10012807; scaffold1700 GLEAN mRNA 293117 296240 0.937776 - . ID=CGI_10012808; scaffold1700 GLEAN promoter 296241 297240 0.937776 - . ID=CGI_10012808; scaffold1700 GLEAN promoter 297634 298633 0.777732 + . ID=CGI_10012809; scaffold1700 GLEAN mRNA 298634 308559 0.777732 + . ID=CGI_10012809; scaffold1700 TRF Tandem_Repeat 298807 298847 50 + . . scaffold1700 TRF Tandem_Repeat 299021 299978 1152 + . . scaffold1700 GLEAN mRNA 313874 314329 0.777728 - . ID=CGI_10012811; scaffold1700 GLEAN promoter 314330 315329 0.777728 - . ID=CGI_10012811; scaffold1700 GLEAN mRNA 315850 321732 1 - . ID=CGI_10012812; scaffold1700 TRF Tandem_Repeat 318565 318614 100 + . . scaffold1700 TRF Tandem_Repeat 320826 320850 50 + . . scaffold1700 GLEAN promoter 321733 322732 1 - . ID=CGI_10012812; scaffold1700 GLEAN mRNA 324430 330281 0.593353 - . ID=CGI_10012813; scaffold1700 GLEAN promoter 330282 331281 0.593353 - . ID=CGI_10012813; scaffold1700 GLEAN promoter 331409 332408 1 + . ID=CGI_10012814; scaffold1700 GLEAN mRNA 332409 339839 1 + . ID=CGI_10012814; scaffold1701 GLEAN mRNA 2291 3204 0.814164 - . ID=CGI_10002843; scaffold1701 TRF Tandem_Repeat 2556 2624 131 + . . scaffold1701 GLEAN promoter 3205 4204 0.814164 - . ID=CGI_10002843; scaffold1701 TRF Tandem_Repeat 4596 4642 94 + . . scaffold1701 TRF Tandem_Repeat 22910 23002 179 + . . scaffold1701 WUBlastX LTR_Gypsy 27267 27392 50 - . . scaffold1701 WUBlastX LTR_Gypsy 27397 27588 34 - . . scaffold1701 WUBlastX LTR_Gypsy 40916 41206 37 + . . scaffold1701 WUBlastX LTR_Gypsy 40997 41407 51 + . . scaffold1701 WUBlastX LTR_Copia 41120 41485 21 + . . scaffold1701 TRF Tandem_Repeat 43613 43670 64 + . . scaffold1701 TRF Tandem_Repeat 48275 48301 54 + . . scaffold1702 GLEAN promoter 1 351 0.618186 + . ID=CGI_10001260; scaffold1702 GLEAN mRNA 352 534 0.618186 + . ID=CGI_10001260; scaffold1702 GLEAN mRNA 12635 17265 1 - . ID=CGI_10001261; scaffold1702 GLEAN promoter 17266 17896 1 - . ID=CGI_10001261; scaffold1702 WUBlastX DNA_hAT-Ac 17582 17881 70 - . . scaffold1702 WUBlastX DNA_hAT-Ac 17669 17896 78 - . . scaffold1703 WUBlastX LINE_CR1 2454 2573 20 - . . scaffold1703 WUBlastX LINE_RTE-X 2603 3079 35 - . . scaffold1703 WUBlastX LINE_L2-Hydra 2723 3019 60 - . . scaffold1703 WUBlastX LINE_RTE-BovB 2774 3064 89 - . . scaffold1703 WUBlastX LINE_RTE-X 2833 3663 114 - . . scaffold1703 WUBlastX LINE_RTE-X 3046 3693 213 - . . scaffold1703 GLEAN mRNA 8136 8306 1 - . ID=CGI_10023035; scaffold1703 GLEAN promoter 8307 9306 1 - . ID=CGI_10023035; scaffold1703 TRF Tandem_Repeat 9168 9211 88 + . . scaffold1703 WUBlastX DNA_TcMar-Marin 14558 14935 57 + . . scaffold1703 WUBlastX LINE_L2 15453 15566 27 - . . scaffold1703 TRF Tandem_Repeat 20037 20090 99 + . . scaffold1703 TRF Tandem_Repeat 21545 21586 84 + . . scaffold1703 TRF Tandem_Repeat 23442 23466 50 + . . scaffold1703 WUBlastX DNA_Crypton 32722 33126 73 - . . scaffold1703 TRF Tandem_Repeat 63857 63896 80 + . . scaffold1703 GLEAN promoter 64063 65062 0.731222 + . ID=CGI_10023037; scaffold1703 GLEAN mRNA 65063 66220 0.731222 + . ID=CGI_10023037; scaffold1703 GLEAN mRNA 66404 72344 0.99403 - . ID=CGI_10023038; scaffold1703 TRF Tandem_Repeat 68688 68732 90 + . . scaffold1703 GLEAN promoter 71381 72380 0.970587 + . ID=CGI_10023039; scaffold1703 GLEAN promoter 72345 73344 0.99403 - . ID=CGI_10023038; scaffold1703 GLEAN mRNA 72381 72857 0.970587 + . ID=CGI_10023039; scaffold1703 GLEAN promoter 87691 88690 1 + . ID=CGI_10023040; scaffold1703 GLEAN mRNA 88691 94932 1 + . ID=CGI_10023040; scaffold1703 TRF Tandem_Repeat 89095 89149 101 + . . scaffold1703 WUBlastX DNA_PiggyBac 90919 91095 84 + . . scaffold1703 WUBlastX DNA_PiggyBac 91610 91711 29 + . . scaffold1703 WUBlastX DNA_PiggyBac 91646 91822 61 + . . scaffold1703 WUBlastX DNA_PiggyBac 92278 92952 100 + . . scaffold1703 WUBlastX DNA_PiggyBac 92389 93513 516 + . . scaffold1703 GLEAN mRNA 108689 126213 0.591658 - . ID=CGI_10023041; scaffold1703 TRF Tandem_Repeat 112763 112792 51 + . . scaffold1703 TRF Tandem_Repeat 123491 124082 1060 + . . scaffold1703 GLEAN promoter 126214 127213 0.591658 - . ID=CGI_10023041; scaffold1703 GLEAN promoter 139691 140690 1 + . ID=CGI_10023042; scaffold1703 GLEAN mRNA 140691 140906 1 + . ID=CGI_10023042; scaffold1703 GLEAN mRNA 141021 153045 0.525157 - . ID=CGI_10023043; scaffold1703 TRF Tandem_Repeat 141955 141988 59 + . . scaffold1703 TRF Tandem_Repeat 141955 142004 73 + . . scaffold1703 TRF Tandem_Repeat 141958 142008 66 + . . scaffold1703 TRF Tandem_Repeat 141962 142012 57 + . . scaffold1703 WUBlastX LINE_RTE-X 142539 143264 91 + . . scaffold1703 TRF Tandem_Repeat 145793 146590 961 + . . scaffold1703 TRF Tandem_Repeat 145793 146589 958 + . . scaffold1703 TRF Tandem_Repeat 147142 147819 811 + . . scaffold1703 WUBlastX DNA_Kolobok-Hyd 152695 153111 31 - . . scaffold1703 GLEAN promoter 153046 154045 0.525157 - . ID=CGI_10023043; scaffold1703 WUBlastX LINE_RTE-X 158223 158726 112 - . . scaffold1703 WUBlastX LINE_RTE-X 158310 158723 128 - . . scaffold1703 TRF Tandem_Repeat 163275 163324 82 + . . scaffold1703 TRF Tandem_Repeat 163278 163337 84 + . . scaffold1703 TRF Tandem_Repeat 166174 166215 84 + . . scaffold1703 WUBlastX LINE_Penelope 169208 169612 40 - . . scaffold1703 WUBlastX LINE_Penelope 169211 169453 65 - . . scaffold1703 WUBlastX LINE_Penelope 169512 169703 25 - . . scaffold1703 WUBlastX LINE_Penelope 169518 169667 54 - . . scaffold1703 GLEAN mRNA 169768 170340 1 - . ID=CGI_10023044; scaffold1703 GLEAN promoter 170341 171340 1 - . ID=CGI_10023044; scaffold1703 WUBlastX LTR_Gypsy 170546 170695 36 - . . scaffold1703 WUBlastX LTR_Gypsy 170595 170810 49 - . . scaffold1703 WUBlastX LTR_Gypsy 170685 170840 75 - . . scaffold1703 WUBlastX LTR_Gypsy 170812 171111 112 - . . scaffold1703 WUBlastX LTR_Gypsy 170812 171063 162 - . . scaffold1703 WUBlastX LTR_Gypsy 171059 171214 25 - . . scaffold1703 WUBlastX LTR_Gypsy 171485 171547 21 - . . scaffold1703 TRF Tandem_Repeat 173434 173793 639 + . . scaffold1703 GLEAN promoter 175884 176883 0.618241 + . ID=CGI_10023045; scaffold1703 WUBlastX LINE_Penelope 175951 176232 76 + . . scaffold1703 GLEAN mRNA 176884 177456 0.618241 + . ID=CGI_10023045; scaffold1703 TRF Tandem_Repeat 178621 178670 77 + . . scaffold1703 WUBlastX LTR_Pao 178855 179277 22 + . . scaffold1703 WUBlastX LTR_Pao 179014 179346 47 + . . scaffold1703 WUBlastX LTR_Pao 179071 179445 72 + . . scaffold1703 WUBlastX LTR_Pao 179146 179445 241 + . . scaffold1703 WUBlastX LTR_Pao 179438 179806 132 + . . scaffold1703 WUBlastX LTR_Pao 179450 179740 139 + . . scaffold1703 WUBlastX LTR_Pao 179450 179689 210 + . . scaffold1703 GLEAN mRNA 182180 182413 1 - . ID=CGI_10023046; scaffold1703 GLEAN promoter 182414 183413 1 - . ID=CGI_10023046; scaffold1703 WUBlastX DNA_En-Spm 190170 190733 20 + . . scaffold1703 WUBlastX DNA_En-Spm 190383 190748 126 + . . scaffold1703 GLEAN promoter 193376 194375 0.999238 + . ID=CGI_10023047; scaffold1703 GLEAN mRNA 194376 196581 0.999238 + . ID=CGI_10023047; scaffold1703 WUBlastX LINE_L2 195440 195577 38 + . . scaffold1703 WUBlastX LTR_Ngaro 196629 196955 97 + . . scaffold1703 WUBlastX LTR_Ngaro 196692 196985 120 + . . scaffold1703 WUBlastX LTR_Ngaro 197252 197347 21 + . . scaffold1703 WUBlastX LTR_Ngaro 197320 197838 341 + . . scaffold1703 WUBlastX LTR_Ngaro 197332 198378 307 + . . scaffold1703 WUBlastX LTR_Gypsy 200478 200561 55 - . . scaffold1703 WUBlastX LTR_Gypsy-Troyk 200611 200775 102 - . . scaffold1703 WUBlastX DNA_MuDR 203138 203230 79 - . . scaffold1703 WUBlastX LTR_Ngaro 206627 206992 130 - . . scaffold1703 WUBlastX LTR_Ngaro 208850 209113 61 - . . scaffold1703 GLEAN mRNA 209003 209413 0.77673 - . ID=CGI_10023048; scaffold1703 WUBlastX LTR_Ngaro 209150 209296 70 - . . scaffold1703 GLEAN promoter 209414 210413 0.77673 - . ID=CGI_10023048; scaffold1703 WUBlastX LTR_Ngaro 209781 210161 124 - . . scaffold1703 WUBlastX LTR_Ngaro 210161 210751 75 - . . scaffold1703 WUBlastX LTR_Ngaro 210227 210718 106 - . . scaffold1703 WUBlastX LTR_Ngaro 210750 211304 79 - . . scaffold1703 WUBlastX LTR_Ngaro 210753 211148 204 - . . scaffold1703 WUBlastX RC_Helitron 212382 212618 103 - . . scaffold1703 WUBlastX RC_Helitron 212460 212699 62 - . . scaffold1703 GLEAN promoter 214396 215395 0.309503 + . ID=CGI_10023049; scaffold1703 GLEAN mRNA 215396 234951 0.309503 + . ID=CGI_10023049; scaffold1703 WUBlastX DNA_Maverick 220849 221073 86 - . . scaffold1703 WUBlastX DNA_Maverick 221083 222003 273 - . . scaffold1703 WUBlastX DNA_Maverick 221230 221904 393 - . . scaffold1703 WUBlastX DNA_Maverick 222114 222893 59 - . . scaffold1703 WUBlastX DNA_Maverick 222264 223553 140 - . . scaffold1703 TRF Tandem_Repeat 227427 228517 1740 + . . scaffold1703 TRF Tandem_Repeat 227427 228517 1677 + . . scaffold1703 TRF Tandem_Repeat 229151 229180 51 + . . scaffold1703 TRF Tandem_Repeat 233313 233442 176 + . . scaffold1703 WUBlastX DNA_Maverick 236400 236594 80 - . . scaffold1703 WUBlastX DNA_Maverick 236534 236743 23 - . . scaffold1703 WUBlastX DNA_Maverick 236588 236707 84 - . . scaffold1703 WUBlastX DNA_Maverick 236835 237263 287 - . . scaffold1703 GLEAN mRNA 238672 239127 0.986464 - . ID=CGI_10023050; scaffold1703 GLEAN promoter 239128 240127 0.986464 - . ID=CGI_10023050; scaffold1703 GLEAN mRNA 239690 239890 0.999157 - . ID=CGI_10023051; scaffold1703 GLEAN promoter 239891 240890 0.999157 - . ID=CGI_10023051; scaffold1703 GLEAN mRNA 241616 241804 0.618108 - . ID=CGI_10023052; scaffold1703 GLEAN promoter 241805 242804 0.618108 - . ID=CGI_10023052; scaffold1703 WUBlastX DNA_Maverick 244371 244577 51 - . . scaffold1703 WUBlastX DNA_Maverick 244513 244686 71 - . . scaffold1703 WUBlastX DNA_Maverick 244525 244671 115 - . . scaffold1703 TRF Tandem_Repeat 252800 252835 72 + . . scaffold1703 TRF Tandem_Repeat 253123 253164 84 + . . scaffold1703 WUBlastX LTR_Gypsy 255404 255739 35 + . . scaffold1703 TRF Tandem_Repeat 257821 257858 76 + . . scaffold1703 TRF Tandem_Repeat 290720 290773 108 + . . scaffold1703 TRF Tandem_Repeat 294510 294548 60 + . . scaffold1703 WUBlastX LTR_Ngaro 296191 296901 174 + . . scaffold1703 WUBlastX LTR_Ngaro 296449 297045 99 + . . scaffold1703 WUBlastX LTR_Ngaro 297143 298759 1020 + . . scaffold1703 WUBlastX LTR_Ngaro 298780 299661 388 + . . scaffold1703 WUBlastX LTR_Gypsy 299591 299683 22 + . . scaffold1703 WUBlastX LINE_RTE-X 300018 300395 43 + . . scaffold1703 WUBlastX DNA_IS4EU 306364 306867 188 + . . scaffold1703 WUBlastX DNA_IS4EU 307042 307800 295 + . . scaffold1703 TRF Tandem_Repeat 311160 311235 71 + . . scaffold1703 WUBlastX DNA_Sola 316781 317398 119 - . . scaffold1703 GLEAN mRNA 316892 317053 0.865902 - . ID=CGI_10023053; scaffold1703 GLEAN promoter 317054 318053 0.865902 - . ID=CGI_10023053; scaffold1703 WUBlastX LTR_Pao 318494 318823 64 - . . scaffold1703 WUBlastX LTR_Pao 318545 318823 154 - . . scaffold1703 WUBlastX LTR_Pao 318611 318868 63 - . . scaffold1703 WUBlastX LTR_Pao 318879 319091 80 - . . scaffold1703 WUBlastX LTR_Pao 318909 319163 44 - . . scaffold1703 WUBlastX LTR_Pao 319131 319931 375 - . . scaffold1703 WUBlastX LTR_Pao 319979 320311 70 - . . scaffold1703 WUBlastX LTR_Pao 320120 320311 73 - . . scaffold1703 WUBlastX LTR_Pao 320308 320445 40 - . . scaffold1703 WUBlastX LTR_Pao 320516 320779 41 - . . scaffold1703 WUBlastX LTR_Pao 320916 320948 20 - . . scaffold1703 WUBlastX LTR_Pao 320968 321468 274 - . . scaffold1703 WUBlastX LTR_Pao 320968 321594 239 - . . scaffold1703 WUBlastX LINE_Penelope 322194 322502 45 + . . scaffold1703 WUBlastX LINE_Penelope 322269 322496 72 + . . scaffold1703 WUBlastX LINE_Penelope 322694 322819 20 + . . scaffold1703 WUBlastX LINE_L2 325745 326176 31 + . . scaffold1703 WUBlastX LINE_L2 325967 326269 67 + . . scaffold1703 WUBlastX LINE_CR1 327026 327082 39 + . . scaffold1703 WUBlastX LINE_L2 327092 327229 56 + . . scaffold1703 WUBlastX LINE_Penelope 329198 329701 50 - . . scaffold1703 WUBlastX LINE_Penelope 329315 329641 64 - . . scaffold1703 WUBlastX DNA_Kolobok 329876 330100 124 + . . scaffold1703 TRF Tandem_Repeat 331506 331538 52 + . . scaffold1703 TRF Tandem_Repeat 335388 335442 101 + . . scaffold1703 TRF Tandem_Repeat 341883 343475 1589 + . . scaffold1703 TRF Tandem_Repeat 341885 343475 1539 + . . scaffold1703 TRF Tandem_Repeat 347435 347496 83 + . . scaffold1703 WUBlastX LINE_L1-Tx1 347730 348032 31 - . . scaffold1703 TRF Tandem_Repeat 355177 355521 609 + . . scaffold1703 TRF Tandem_Repeat 355645 355685 82 + . . scaffold1703 GLEAN promoter 355727 356726 0.999162 + . ID=CGI_10023054; scaffold1703 GLEAN mRNA 356727 362553 0.999162 + . ID=CGI_10023054; scaffold1703 TRF Tandem_Repeat 358670 358712 77 + . . scaffold1703 TRF Tandem_Repeat 363570 363651 146 + . . scaffold1703 GLEAN mRNA 363936 377675 0.813492 - . ID=CGI_10023055; scaffold1703 TRF Tandem_Repeat 364232 364371 135 + . . scaffold1703 TRF Tandem_Repeat 369413 369641 213 + . . scaffold1703 TRF Tandem_Repeat 369417 369639 245 + . . scaffold1703 TRF Tandem_Repeat 369524 369635 107 + . . scaffold1703 TRF Tandem_Repeat 371817 371904 167 + . . scaffold1703 TRF Tandem_Repeat 371995 372166 299 + . . scaffold1703 TRF Tandem_Repeat 374232 374584 625 + . . scaffold1703 GLEAN promoter 377676 378675 0.813492 - . ID=CGI_10023055; scaffold1703 GLEAN promoter 379685 380684 0.593129 + . ID=CGI_10023056; scaffold1703 GLEAN mRNA 380685 389285 0.593129 + . ID=CGI_10023056; scaffold1703 TRF Tandem_Repeat 387969 388097 93 + . . scaffold1703 TRF Tandem_Repeat 389643 389753 71 + . . scaffold1703 GLEAN promoter 390166 391165 0.999884 + . ID=CGI_10023057; scaffold1703 GLEAN mRNA 391166 392080 0.999884 + . ID=CGI_10023057; scaffold1703 TRF Tandem_Repeat 391391 391472 164 + . . scaffold1703 TRF Tandem_Repeat 396453 396563 80 + . . scaffold1703 TRF Tandem_Repeat 397527 397622 83 + . . scaffold1703 TRF Tandem_Repeat 397528 397618 65 + . . scaffold1703 TRF Tandem_Repeat 397532 397622 83 + . . scaffold1703 TRF Tandem_Repeat 401740 401769 60 + . . scaffold1703 TRF Tandem_Repeat 406767 406827 122 + . . scaffold1703 GLEAN mRNA 410303 422392 0.738334 - . ID=CGI_10023058; scaffold1703 TRF Tandem_Repeat 412340 412425 154 + . . scaffold1703 TRF Tandem_Repeat 415346 415566 293 + . . scaffold1703 WUBlastX LINE_RTE-BovB 418737 419051 76 + . . scaffold1703 WUBlastX LINE_RTE-BovB 419399 419611 68 + . . scaffold1703 GLEAN promoter 422393 423392 0.738334 - . ID=CGI_10023058; scaffold1703 GLEAN promoter 424713 425712 0.618241 + . ID=CGI_10023060; scaffold1703 GLEAN mRNA 425713 425868 0.618241 + . ID=CGI_10023060; scaffold1703 GLEAN mRNA 427909 433678 0.999999 - . ID=CGI_10023061; scaffold1703 GLEAN promoter 433679 434678 0.999999 - . ID=CGI_10023061; scaffold1703 WUBlastX LINE_RTE-X 440258 440983 240 + . . scaffold1703 TRF Tandem_Repeat 443790 443856 134 + . . scaffold1703 TRF Tandem_Repeat 447729 447790 124 + . . scaffold1703 TRF Tandem_Repeat 449644 449696 106 + . . scaffold1703 GLEAN mRNA 460683 476446 0.999324 - . ID=CGI_10023062; scaffold1703 WUBlastX LINE_L1-Tx1 466865 467620 149 + . . scaffold1703 WUBlastX LINE_L1-Tx1 467592 470261 878 + . . scaffold1703 WUBlastX LINE_RTE-X 472323 472892 181 + . . scaffold1703 GLEAN promoter 476447 477446 0.999324 - . ID=CGI_10023062; scaffold1703 TRF Tandem_Repeat 480237 480276 80 + . . scaffold1703 GLEAN promoter 483751 484750 0.999276 + . ID=CGI_10023063; scaffold1703 GLEAN mRNA 484751 498660 0.999276 + . ID=CGI_10023063; scaffold1703 TRF Tandem_Repeat 491056 491101 92 + . . scaffold1703 TRF Tandem_Repeat 495722 495789 109 + . . scaffold1703 TRF Tandem_Repeat 495788 495849 124 + . . scaffold1703 GLEAN mRNA 501306 510030 0.836238 - . ID=CGI_10023064; scaffold1703 TRF Tandem_Repeat 507590 507968 501 + . . scaffold1703 GLEAN promoter 510031 511030 0.836238 - . ID=CGI_10023064; scaffold1703 TRF Tandem_Repeat 512103 512161 109 + . . scaffold1703 TRF Tandem_Repeat 515582 515627 65 + . . scaffold1703 TRF Tandem_Repeat 515582 515627 65 + . . scaffold1703 TRF Tandem_Repeat 515582 515627 65 + . . scaffold1703 GLEAN promoter 515970 516969 0.999949 + . ID=CGI_10023065; scaffold1703 TRF Tandem_Repeat 516045 516105 122 + . . scaffold1703 GLEAN mRNA 516970 524164 0.999949 + . ID=CGI_10023065; scaffold1703 TRF Tandem_Repeat 519145 519191 94 + . . scaffold1703 GLEAN mRNA 528856 574710 0.728281 - . ID=CGI_10023066; scaffold1703 TRF Tandem_Repeat 535909 535939 62 + . . scaffold1703 TRF Tandem_Repeat 552222 552252 53 + . . scaffold1703 GLEAN promoter 574711 575710 0.728281 - . ID=CGI_10023066; scaffold1703 GLEAN mRNA 579438 582273 0.761232 - . ID=CGI_10023067; scaffold1703 GLEAN promoter 582274 583273 0.761232 - . ID=CGI_10023067; scaffold1703 TRF Tandem_Repeat 583223 583263 82 + . . scaffold1703 TRF Tandem_Repeat 587268 587312 90 + . . scaffold1703 TRF Tandem_Repeat 587882 587916 61 + . . scaffold1703 GLEAN promoter 592853 593852 0.584764 + . ID=CGI_10023068; scaffold1703 GLEAN mRNA 593853 609573 0.584764 + . ID=CGI_10023068; scaffold1703 TRF Tandem_Repeat 595000 595578 838 + . . scaffold1703 TRF Tandem_Repeat 597499 597888 352 + . . scaffold1703 TRF Tandem_Repeat 603846 603880 52 + . . scaffold1703 GLEAN mRNA 615001 618656 1 - . ID=CGI_10023069; scaffold1703 GLEAN promoter 618657 619656 1 - . ID=CGI_10023069; scaffold1703 TRF Tandem_Repeat 618851 618879 58 + . . scaffold1703 TRF Tandem_Repeat 619545 619591 94 + . . scaffold1703 GLEAN promoter 626963 627962 0.52528 + . ID=CGI_10023071; scaffold1703 GLEAN mRNA 627963 645159 0.52528 + . ID=CGI_10023071; scaffold1703 TRF Tandem_Repeat 629798 629853 112 + . . scaffold1703 GLEAN mRNA 642760 671813 0.998976 - . ID=CGI_10023072; scaffold1703 WUBlastX LTR_Gypsy 666972 670733 1478 + . . scaffold1703 WUBlastX LTR_Gypsy 667329 670481 2596 + . . scaffold1703 WUBlastX LTR_Gypsy 669372 671030 402 + . . scaffold1703 GLEAN promoter 671814 672813 0.998976 - . ID=CGI_10023072; scaffold1703 GLEAN mRNA 676143 677003 0.777732 - . ID=CGI_10023074; scaffold1703 GLEAN promoter 677004 678003 0.777732 - . ID=CGI_10023074; scaffold1703 WUBlastX LINE_RTE-X 678268 678543 66 + . . scaffold1703 WUBlastX LINE_RTE-X 678271 678486 93 + . . scaffold1703 WUBlastX LINE_RTE-X 678307 678486 119 + . . scaffold1703 TRF Tandem_Repeat 682851 682884 68 + . . scaffold1703 TRF Tandem_Repeat 683356 683393 76 + . . scaffold1703 WUBlastX LINE_L2 684304 684630 22 + . . scaffold1703 WUBlastX LINE_RTE-X 684367 684633 73 + . . scaffold1703 WUBlastX LINE_RTE-X 684430 684633 105 + . . scaffold1703 WUBlastX LINE_RTE-X 684627 684872 123 + . . scaffold1703 WUBlastX LINE_RTE-X 684842 685468 202 + . . scaffold1703 WUBlastX LINE_RTE-X 684845 686200 121 + . . scaffold1703 WUBlastX LINE_RTE-X 685381 685680 152 + . . scaffold1703 WUBlastX LINE_RTE-X 685991 686263 44 + . . scaffold1703 TRF Tandem_Repeat 689947 689993 85 + . . scaffold1703 WUBlastX LINE_RTE-X 701045 701275 60 - . . scaffold1703 WUBlastX LINE_RTE-X 701141 701275 76 - . . scaffold1703 WUBlastX LINE_RTE-X 701283 702908 877 - . . scaffold1703 WUBlastX LINE_R2 703098 703208 21 - . . scaffold1703 WUBlastX LINE_L1 703210 703296 20 - . . scaffold1703 TRF Tandem_Repeat 708508 708687 128 + . . scaffold1703 TRF Tandem_Repeat 708528 708642 99 + . . scaffold1703 TRF Tandem_Repeat 718798 718853 103 + . . scaffold1703 TRF Tandem_Repeat 721880 721913 54 + . . scaffold1703 GLEAN promoter 727649 728648 0.986625 + . ID=CGI_10023075; scaffold1703 GLEAN mRNA 728649 730454 0.986625 + . ID=CGI_10023075; scaffold1703 WUBlastX LINE_RTE-X 739535 739765 66 + . . scaffold1703 WUBlastX LINE_RTE-X 739604 739807 67 + . . scaffold1703 WUBlastX LINE_RTE-X 739604 739756 83 + . . scaffold1703 TRF Tandem_Repeat 746549 746578 60 + . . scaffold1703 TRF Tandem_Repeat 747966 748018 92 + . . scaffold1703 TRF Tandem_Repeat 773639 773700 124 + . . scaffold1703 WUBlastX DNA_Harbinger 778327 778452 82 - . . scaffold1703 WUBlastX DNA_Harbinger 778454 778576 56 - . . scaffold1703 WUBlastX DNA_Harbinger 778539 778979 473 - . . scaffold1703 WUBlastX DNA_Harbinger 778945 779073 37 - . . scaffold1703 WUBlastX DNA_Harbinger 778945 779046 50 - . . scaffold1703 WUBlastX DNA_Harbinger 779069 779365 239 - . . scaffold1703 TRF Tandem_Repeat 781171 781256 108 + . . scaffold1703 TRF Tandem_Repeat 781171 781252 96 + . . scaffold1703 TRF Tandem_Repeat 781172 781252 103 + . . scaffold1703 TRF Tandem_Repeat 781176 781258 102 + . . scaffold1703 TRF Tandem_Repeat 783164 783211 96 + . . scaffold1703 TRF Tandem_Repeat 784484 784527 88 + . . scaffold1703 TRF Tandem_Repeat 789801 789847 94 + . . scaffold1703 TRF Tandem_Repeat 798182 798207 52 + . . scaffold1703 TRF Tandem_Repeat 801550 801594 63 + . . scaffold1703 TRF Tandem_Repeat 805319 805451 86 + . . scaffold1703 TRF Tandem_Repeat 805397 805477 63 + . . scaffold1703 TRF Tandem_Repeat 817309 817530 169 + . . scaffold1704 TRF Tandem_Repeat 530 555 52 + . . scaffold1704 TRF Tandem_Repeat 6737 7553 1338 + . . scaffold1704 TRF Tandem_Repeat 8804 9690 1381 + . . scaffold1704 WUBlastX DNA_Maverick 10305 10754 48 + . . scaffold1704 TRF Tandem_Repeat 10809 10858 73 + . . scaffold1704 TRF Tandem_Repeat 10812 10892 76 + . . scaffold1704 TRF Tandem_Repeat 10812 10893 65 + . . scaffold1704 GLEAN promoter 11405 12404 0.998148 + . ID=CGI_10010159; scaffold1704 GLEAN mRNA 12405 27811 0.998148 + . ID=CGI_10010159; scaffold1704 TRF Tandem_Repeat 14857 14893 51 + . . scaffold1704 GLEAN mRNA 18953 19327 0.999984 - . ID=CGI_10010160; scaffold1704 WUBlastX DNA_PiggyBac 19022 19255 38 - . . scaffold1704 GLEAN promoter 19328 20327 0.999984 - . ID=CGI_10010160; scaffold1704 TRF Tandem_Repeat 23237 25032 1477 + . . scaffold1704 WUBlastX LTR_Gypsy 26621 27079 52 + . . scaffold1704 WUBlastX LTR_Gypsy 26672 26989 61 + . . scaffold1704 WUBlastX LINE_RTE-X 29272 29622 65 + . . scaffold1704 WUBlastX LINE_RTE-X 29272 29520 111 + . . scaffold1704 GLEAN promoter 32024 33023 1 + . ID=CGI_10010161; scaffold1704 GLEAN mRNA 33024 33613 1 + . ID=CGI_10010161; scaffold1704 GLEAN mRNA 35457 41695 0.675217 - . ID=CGI_10010162; scaffold1704 WUBlastX LINE_RTE-X 36210 37103 146 + . . scaffold1704 WUBlastX LINE_RTE-X 39455 40327 235 - . . scaffold1704 WUBlastX LINE_RTE-X 40733 40843 34 - . . scaffold1704 GLEAN promoter 41696 42695 0.675217 - . ID=CGI_10010162; scaffold1704 GLEAN promoter 42151 43150 1 + . ID=CGI_10010163; scaffold1704 GLEAN mRNA 43151 46544 1 + . ID=CGI_10010163; scaffold1704 GLEAN promoter 50075 51074 0.999415 + . ID=CGI_10010164; scaffold1704 GLEAN mRNA 51075 55226 0.999415 + . ID=CGI_10010164; scaffold1704 GLEAN promoter 59375 60374 0.999998 + . ID=CGI_10010165; scaffold1704 GLEAN mRNA 60375 75262 0.999998 + . ID=CGI_10010165; scaffold1704 GLEAN mRNA 62630 79284 0.99909 - . ID=CGI_10010166; scaffold1704 TRF Tandem_Repeat 67009 67542 203 + . . scaffold1704 TRF Tandem_Repeat 67052 67542 423 + . . scaffold1704 TRF Tandem_Repeat 67052 67542 387 + . . scaffold1704 GLEAN promoter 79285 80284 0.99909 - . ID=CGI_10010166; scaffold1704 GLEAN mRNA 79600 100054 0.998817 - . ID=CGI_10010167; scaffold1704 TRF Tandem_Repeat 80132 80300 218 + . . scaffold1704 TRF Tandem_Repeat 80511 80606 51 + . . scaffold1704 TRF Tandem_Repeat 81231 82269 852 + . . scaffold1704 TRF Tandem_Repeat 81369 81546 109 + . . scaffold1704 TRF Tandem_Repeat 81677 82269 656 + . . scaffold1704 TRF Tandem_Repeat 82067 82289 149 + . . scaffold1704 TRF Tandem_Repeat 92130 92242 190 + . . scaffold1704 TRF Tandem_Repeat 94944 95006 108 + . . scaffold1704 GLEAN promoter 99651 100650 1 + . ID=CGI_10010168; scaffold1704 GLEAN promoter 100055 101054 0.998817 - . ID=CGI_10010167; scaffold1704 GLEAN mRNA 100651 105296 1 + . ID=CGI_10010168; scaffold1704 TRF Tandem_Repeat 110179 110216 76 + . . scaffold1704 GLEAN mRNA 113948 115845 1 - . ID=CGI_10010169; scaffold1704 GLEAN promoter 115846 116845 1 - . ID=CGI_10010169; scaffold1704 TRF Tandem_Repeat 120556 120593 76 + . . scaffold1704 TRF Tandem_Repeat 120858 120917 120 + . . scaffold1704 TRF Tandem_Repeat 120920 120960 82 + . . scaffold1704 WUBlastX LINE_R2-Hero 123888 124577 589 + . . scaffold1704 WUBlastX LINE_R2-Hero 124571 124819 138 + . . scaffold1704 WUBlastX LINE_R2-Hero 124906 125541 383 + . . scaffold1704 WUBlastX LINE_R2-Hero 125026 125547 399 + . . scaffold1704 WUBlastX LINE_R2-Hero 125544 125648 99 + . . scaffold1704 WUBlastX LINE_R2-Hero 125606 125827 75 + . . scaffold1704 WUBlastX LINE_RTE-X 127087 127422 60 - . . scaffold1704 WUBlastX LINE_RTE-RTE 127147 127392 64 - . . scaffold1704 GLEAN promoter 129337 130336 0.994715 + . ID=CGI_10010170; scaffold1704 GLEAN mRNA 130337 165249 0.994715 + . ID=CGI_10010170; scaffold1704 WUBlastX DNA_Crypton 133095 133709 117 + . . scaffold1704 WUBlastX DNA_Crypton 133428 133763 89 + . . scaffold1704 TRF Tandem_Repeat 134757 134797 82 + . . scaffold1704 TRF Tandem_Repeat 136510 136548 51 + . . scaffold1704 TRF Tandem_Repeat 139841 140076 400 + . . scaffold1704 TRF Tandem_Repeat 141215 141340 110 + . . scaffold1704 TRF Tandem_Repeat 145045 145592 581 + . . scaffold1704 TRF Tandem_Repeat 147149 147413 268 + . . scaffold1704 WUBlastX LINE_RTE-X 148939 149178 29 + . . scaffold1704 WUBlastX LINE_RTE-X 149017 149574 37 + . . scaffold1704 WUBlastX LINE_RTE-X 149673 150116 94 + . . scaffold1704 WUBlastX LINE_RTE-X 149781 150182 158 + . . scaffold1704 GLEAN mRNA 152249 153448 1 - . ID=CGI_10010171; scaffold1704 GLEAN promoter 153449 154448 1 - . ID=CGI_10010171; scaffold1704 GLEAN promoter 186334 187333 1 + . ID=CGI_10010172; scaffold1704 GLEAN mRNA 187334 194165 1 + . ID=CGI_10010172; scaffold1704 TRF Tandem_Repeat 194666 195545 1309 + . . scaffold1704 TRF Tandem_Repeat 196489 196635 73 + . . scaffold1704 TRF Tandem_Repeat 196551 196680 93 + . . scaffold1704 TRF Tandem_Repeat 206124 206162 78 + . . scaffold1704 GLEAN mRNA 206798 218917 1 - . ID=CGI_10010173; scaffold1704 TRF Tandem_Repeat 207174 207209 56 + . . scaffold1704 TRF Tandem_Repeat 210756 211148 488 + . . scaffold1704 GLEAN promoter 218918 219917 1 - . ID=CGI_10010173; scaffold1704 GLEAN promoter 220503 221502 0.863496 + . ID=CGI_10010174; scaffold1704 TRF Tandem_Repeat 221316 221343 56 + . . scaffold1704 GLEAN mRNA 221503 251055 0.863496 + . ID=CGI_10010174; scaffold1704 TRF Tandem_Repeat 238614 238657 88 + . . scaffold1704 TRF Tandem_Repeat 241164 241462 482 + . . scaffold1704 TRF Tandem_Repeat 244102 244240 208 + . . scaffold1705 GLEAN promoter 12925 13924 0.996603 + . ID=CGI_10007464; scaffold1705 GLEAN mRNA 13925 28102 0.996603 + . ID=CGI_10007464; scaffold1705 TRF Tandem_Repeat 18915 18997 166 + . . scaffold1705 TRF Tandem_Repeat 23664 23718 110 + . . scaffold1705 TRF Tandem_Repeat 25469 25510 84 + . . scaffold1705 TRF Tandem_Repeat 28642 28694 106 + . . scaffold1705 GLEAN mRNA 31328 39661 1 - . ID=CGI_10007465; scaffold1705 TRF Tandem_Repeat 39217 39467 430 + . . scaffold1705 GLEAN promoter 39662 40661 1 - . ID=CGI_10007465; scaffold1705 GLEAN mRNA 40654 45724 0.999999 - . ID=CGI_10007466; scaffold1705 TRF Tandem_Repeat 41958 41989 64 + . . scaffold1705 TRF Tandem_Repeat 42543 42750 134 + . . scaffold1705 GLEAN promoter 45725 46724 0.999999 - . ID=CGI_10007466; scaffold1705 TRF Tandem_Repeat 51424 51483 120 + . . scaffold1705 TRF Tandem_Repeat 52415 52453 69 + . . scaffold1705 TRF Tandem_Repeat 56389 56413 50 + . . scaffold1705 TRF Tandem_Repeat 57016 58384 1252 + . . scaffold1705 GLEAN mRNA 59399 64263 0.999997 - . ID=CGI_10007467; scaffold1705 TRF Tandem_Repeat 62370 62443 59 + . . scaffold1705 GLEAN promoter 64264 65263 0.999997 - . ID=CGI_10007467; scaffold1705 TRF Tandem_Repeat 64903 64951 98 + . . scaffold1705 GLEAN promoter 67885 68884 0.343232 + . ID=CGI_10007468; scaffold1705 GLEAN mRNA 68885 100114 0.343232 + . ID=CGI_10007468; scaffold1705 TRF Tandem_Repeat 70519 70571 97 + . . scaffold1705 GLEAN mRNA 71240 77148 0.999676 - . ID=CGI_10007469; scaffold1705 TRF Tandem_Repeat 72724 72755 64 + . . scaffold1705 GLEAN promoter 77149 78148 0.999676 - . ID=CGI_10007469; scaffold1705 TRF Tandem_Repeat 80165 83153 3661 + . . scaffold1705 TRF Tandem_Repeat 86998 87053 112 + . . scaffold1705 TRF Tandem_Repeat 87193 87283 182 + . . scaffold1705 GLEAN mRNA 90422 91015 0.69447 - . ID=CGI_10007470; scaffold1705 GLEAN promoter 91016 92015 0.69447 - . ID=CGI_10007470; scaffold1705 WUBlastX LTR_Copia 91067 91141 20 - . . scaffold1705 WUBlastX LTR_Gypsy-Cigr 91115 92638 822 - . . scaffold1705 WUBlastX LTR_Gypsy 91376 94810 1925 - . . scaffold1705 WUBlastX LTR_Gypsy 91481 94249 2036 - . . scaffold1705 WUBlastX LTR_Gypsy 94478 95860 94 - . . scaffold1705 WUBlastX LTR_Gypsy 94904 95674 171 - . . scaffold1705 WUBlastX LTR_Gypsy 95273 95989 46 - . . scaffold1705 WUBlastX LTR_Gypsy 96747 96947 72 + . . scaffold1705 WUBlastX LTR_Gypsy-Cigr 96786 98054 712 + . . scaffold1705 WUBlastX LTR_Gypsy 97738 98613 89 + . . scaffold1705 WUBlastX LTR_Gypsy-Cigr 98101 98499 166 + . . scaffold1705 TRF Tandem_Repeat 99602 99725 81 + . . scaffold1705 TRF Tandem_Repeat 100901 100976 67 + . . scaffold1705 TRF Tandem_Repeat 100913 100976 76 + . . scaffold1705 TRF Tandem_Repeat 106085 106124 62 + . . scaffold1705 TRF Tandem_Repeat 119295 119324 53 + . . scaffold1705 WUBlastX DNA_Harbinger 119703 120422 213 - . . scaffold1705 WUBlastX DNA_Harbinger 119802 120410 231 - . . scaffold1705 WUBlastX DNA_Harbinger 120425 120598 45 - . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 121395 121439 23 - . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 121528 122148 188 - . . scaffold1705 GLEAN mRNA 121657 122031 0.866433 - . ID=CGI_10007472; scaffold1705 GLEAN promoter 122032 123031 0.866433 - . ID=CGI_10007472; scaffold1705 WUBlastX LTR_Gypsy-Troyk 122108 122461 316 - . . scaffold1705 WUBlastX LTR_Gypsy 122297 122500 24 - . . scaffold1705 WUBlastX LTR_Gypsy 122500 122757 256 - . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 122760 124946 1824 - . . scaffold1705 WUBlastX LTR_Gypsy 124945 125055 86 - . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 124945 125106 67 - . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 125109 125411 236 - . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 125856 126257 60 - . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 125905 126093 238 - . . scaffold1705 WUBlastX LTR_Gypsy-Troyk 126144 126260 77 - . . scaffold1705 TRF Tandem_Repeat 129774 129818 72 + . . scaffold1705 TRF Tandem_Repeat 132146 132185 53 + . . scaffold1705 GLEAN promoter 159580 160579 1 + . ID=CGI_10007473; scaffold1705 GLEAN mRNA 160580 168810 1 + . ID=CGI_10007473; scaffold1705 TRF Tandem_Repeat 166679 166714 54 + . . scaffold1705 GLEAN mRNA 168554 181759 0.810172 - . ID=CGI_10007474; scaffold1705 WUBlastX LINE_RTE-BovB 177890 178147 79 + . . scaffold1705 WUBlastX LINE_RTE-BovB 178119 178283 113 + . . scaffold1705 GLEAN promoter 181760 182283 0.810172 - . ID=CGI_10007474; scaffold1706 GLEAN mRNA 656 3862 1 - . ID=CGI_10003661; scaffold1706 WUBlastX DNA_Kolobok-Hyd 3479 3886 47 - . . scaffold1706 GLEAN promoter 3863 4862 1 - . ID=CGI_10003661; scaffold1706 WUBlastX DNA_Kolobok-Hyd 4097 4237 34 - . . scaffold1706 WUBlastX DNA_Kolobok-Hyd 4467 4691 21 - . . scaffold1706 TRF Tandem_Repeat 16961 16994 68 + . . scaffold1706 TRF Tandem_Repeat 26697 26807 97 + . . scaffold1706 WUBlastX DNA_Kolobok 37769 37981 93 - . . scaffold1706 GLEAN mRNA 37786 56373 0.330403 - . ID=CGI_10003662; scaffold1706 WUBlastX DNA_Kolobok 37817 38050 78 - . . scaffold1706 WUBlastX LINE_L1-Tx1 45618 46463 66 + . . scaffold1706 WUBlastX LINE_L1-Tx1 45834 46430 261 + . . scaffold1706 WUBlastX LINE_L1 45846 46556 71 + . . scaffold1706 WUBlastX LINE_L1 46645 46788 35 + . . scaffold1706 WUBlastX LINE_L1 46991 47521 29 + . . scaffold1706 WUBlastX LINE_L1-Tx1 47066 47497 94 + . . scaffold1706 TRF Tandem_Repeat 53949 54023 51 + . . scaffold1706 TRF Tandem_Repeat 53970 53999 51 + . . scaffold1706 GLEAN promoter 56374 57373 0.330403 - . ID=CGI_10003662; scaffold1706 TRF Tandem_Repeat 61680 61726 51 + . . scaffold1706 WUBlastX LINE_RTE-BovB 70227 70412 77 + . . scaffold1706 WUBlastX LINE_CR1 71828 72376 51 + . . scaffold1706 WUBlastX LINE_L1 71915 72529 55 + . . scaffold1706 WUBlastX LINE_RTE-BovB 71915 72433 297 + . . scaffold1706 WUBlastX LTR_Gypsy 76942 77073 37 + . . scaffold1706 WUBlastX LTR_Gypsy 77700 77828 20 + . . scaffold1706 WUBlastX LTR_Gypsy 78444 78563 23 + . . scaffold1706 WUBlastX LTR_Gypsy 78444 78539 44 + . . scaffold1707 WUBlastX LTR_Pao 358 750 140 + . . scaffold1707 WUBlastX LTR_Pao 448 786 259 + . . scaffold1707 GLEAN mRNA 1527 2835 0.999999 - . ID=CGI_10009945; scaffold1707 WUBlastX DNA_TcMar-Tc1 1578 1637 24 - . . scaffold1707 WUBlastX DNA_TcMar-Tc1 1840 1986 72 - . . scaffold1707 GLEAN promoter 2836 3835 0.999999 - . ID=CGI_10009945; scaffold1707 TRF Tandem_Repeat 10011 10060 50 + . . scaffold1707 TRF Tandem_Repeat 10011 10060 57 + . . scaffold1707 WUBlastX LTR_Gypsy 18978 19937 768 - . . scaffold1707 WUBlastX LTR_Gypsy 19934 21634 964 - . . scaffold1707 WUBlastX LTR_ERV-Foamy 20876 21892 161 - . . scaffold1707 GLEAN promoter 20976 21975 0.107162 + . ID=CGI_10009947; scaffold1707 GLEAN mRNA 21976 52763 0.107162 + . ID=CGI_10009947; scaffold1707 TRF Tandem_Repeat 26313 26392 133 + . . scaffold1707 TRF Tandem_Repeat 28234 28363 113 + . . scaffold1707 TRF Tandem_Repeat 28234 28363 129 + . . scaffold1707 TRF Tandem_Repeat 41538 41595 93 + . . scaffold1707 WUBlastX LINE_L2 55077 55349 211 + . . scaffold1707 WUBlastX LINE_L2 55363 55446 35 + . . scaffold1707 WUBlastX LINE_L2 55451 55525 41 + . . scaffold1707 GLEAN promoter 58144 59143 0.654454 + . ID=CGI_10009948; scaffold1707 GLEAN mRNA 59144 60817 0.654454 + . ID=CGI_10009948; scaffold1707 WUBlastX DNA_hAT-hATw 81794 81958 27 - . . scaffold1707 WUBlastX DNA_hAT-hATw 81935 82192 72 - . . scaffold1707 WUBlastX DNA_hAT-hATw 82010 82267 87 - . . scaffold1707 WUBlastX DNA_hAT-hATw 82408 83211 237 - . . scaffold1707 WUBlastX DNA_Sola 89450 90907 187 + . . scaffold1707 WUBlastX DNA_Sola 89897 90964 214 + . . scaffold1707 WUBlastX DNA_Sola 91336 91521 20 + . . scaffold1707 WUBlastX DNA_hAT-Tip100 99517 100101 67 + . . scaffold1707 WUBlastX DNA_hAT-Tip100 99613 100101 70 + . . scaffold1707 WUBlastX DNA_hAT-Tip100 100062 100376 128 + . . scaffold1707 TRF Tandem_Repeat 101458 101574 116 + . . scaffold1707 GLEAN mRNA 101886 106535 0.999676 - . ID=CGI_10009949; scaffold1707 GLEAN promoter 106536 107535 0.999676 - . ID=CGI_10009949; scaffold1707 GLEAN promoter 106713 107712 0.999997 + . ID=CGI_10009950; scaffold1707 GLEAN mRNA 107713 108835 0.999997 + . ID=CGI_10009950; scaffold1707 GLEAN promoter 112937 113936 0.630211 + . ID=CGI_10009951; scaffold1707 GLEAN mRNA 113937 128554 0.630211 + . ID=CGI_10009951; scaffold1707 TRF Tandem_Repeat 130468 130566 76 + . . scaffold1707 GLEAN mRNA 130633 146231 0.946308 - . ID=CGI_10009952; scaffold1707 TRF Tandem_Repeat 133589 133616 56 + . . scaffold1707 GLEAN promoter 146232 147231 0.946308 - . ID=CGI_10009952; scaffold1707 TRF Tandem_Repeat 149164 149211 96 + . . scaffold1707 TRF Tandem_Repeat 159206 159235 60 + . . scaffold1707 WUBlastX LINE_L1-Tx1 160402 161223 271 - . . scaffold1707 TRF Tandem_Repeat 161226 161563 265 + . . scaffold1707 TRF Tandem_Repeat 161235 161562 294 + . . scaffold1707 TRF Tandem_Repeat 162602 163517 670 + . . scaffold1707 TRF Tandem_Repeat 162892 163521 480 + . . scaffold1707 GLEAN mRNA 165250 165803 0.552636 - . ID=CGI_10009953; scaffold1707 GLEAN promoter 165804 166803 0.552636 - . ID=CGI_10009953; scaffold1707 TRF Tandem_Repeat 166226 166261 72 + . . scaffold1707 TRF Tandem_Repeat 177990 178050 68 + . . scaffold1707 TRF Tandem_Repeat 177999 178050 50 + . . scaffold1707 TRF Tandem_Repeat 185264 185306 86 + . . scaffold1707 WUBlastX LINE_L1 196730 196837 39 + . . scaffold1707 TRF Tandem_Repeat 204659 204868 148 + . . scaffold1707 TRF Tandem_Repeat 204940 205005 118 + . . scaffold1707 TRF Tandem_Repeat 209338 209478 122 + . . scaffold1707 TRF Tandem_Repeat 210654 210745 98 + . . scaffold1707 WUBlastX LINE_RTE-X 229148 230131 432 - . . scaffold1707 WUBlastX LINE_RTE-X 230134 230601 143 - . . scaffold1707 WUBlastX LINE_RTE-X 230155 230520 237 - . . scaffold1707 WUBlastX LINE_RTE-X 230519 230896 91 - . . scaffold1707 WUBlastX LINE_RTE-X 230976 232004 141 - . . scaffold1707 WUBlastX LINE_RTE-X 231714 232073 112 - . . scaffold1707 WUBlastX LINE_L2 231753 232169 26 - . . scaffold1707 TRF Tandem_Repeat 238790 238824 54 + . . scaffold1707 GLEAN promoter 241110 242109 0.999216 + . ID=CGI_10009954; scaffold1707 GLEAN mRNA 242110 245931 0.999216 + . ID=CGI_10009954; scaffold1708 TRF Tandem_Repeat 2590 2614 50 + . . scaffold1708 TRF Tandem_Repeat 2986 3061 125 + . . scaffold1708 TRF Tandem_Repeat 2986 3061 107 + . . scaffold1708 GLEAN promoter 5391 6390 0.777526 + . ID=CGI_10005574; scaffold1708 GLEAN mRNA 6391 9576 0.777526 + . ID=CGI_10005574; scaffold1708 WUBlastX LINE_L2 6895 6993 47 - . . scaffold1708 WUBlastX LINE_CR1-L2 6969 8450 258 - . . scaffold1708 WUBlastX LINE_L2 6990 8234 833 - . . scaffold1708 WUBlastX LINE_L2 6993 8771 233 - . . scaffold1708 WUBlastX LINE_L2 8613 8837 70 - . . scaffold1708 WUBlastX LINE_L2 10629 11345 104 + . . scaffold1708 WUBlastX LINE_L2 10788 11375 173 + . . scaffold1708 WUBlastX LINE_L1-Tx1 11810 13873 953 + . . scaffold1708 GLEAN promoter 14824 15823 1 + . ID=CGI_10005575; scaffold1708 GLEAN mRNA 15824 17269 1 + . ID=CGI_10005575; scaffold1708 GLEAN mRNA 19578 22812 0.900772 - . ID=CGI_10005576; scaffold1708 GLEAN promoter 22813 23812 0.900772 - . ID=CGI_10005576; scaffold1708 GLEAN promoter 26174 27173 1 + . ID=CGI_10005577; scaffold1708 GLEAN mRNA 27174 28963 1 + . ID=CGI_10005577; scaffold1708 TRF Tandem_Repeat 27308 27347 53 + . . scaffold1708 GLEAN mRNA 29329 36649 0.649027 - . ID=CGI_10005578; scaffold1708 GLEAN promoter 35648 36647 0.999997 + . ID=CGI_10005579; scaffold1708 GLEAN mRNA 36648 38242 0.999997 + . ID=CGI_10005579; scaffold1708 GLEAN promoter 36650 37649 0.649027 - . ID=CGI_10005578; scaffold1708 GLEAN promoter 38462 39461 1 + . ID=CGI_10005580; scaffold1708 GLEAN mRNA 39462 45275 1 + . ID=CGI_10005580; scaffold1708 TRF Tandem_Repeat 63075 63130 103 + . . scaffold1708 WUBlastX LTR_Ngaro 67219 67590 133 + . . scaffold1708 WUBlastX LTR_Ngaro 67219 67662 72 + . . scaffold1708 WUBlastX LTR_Ngaro 67766 68155 64 + . . scaffold1708 WUBlastX LTR_Ngaro 67868 68119 135 + . . scaffold1708 WUBlastX LTR_Ngaro 68122 68829 501 + . . scaffold1708 WUBlastX LTR_Gypsy 68215 68952 30 + . . scaffold1708 WUBlastX LTR_Ngaro 69705 69827 51 + . . scaffold1708 WUBlastX LTR_Ngaro 69717 69818 76 + . . scaffold1708 WUBlastX LTR_Ngaro 69738 69860 30 + . . scaffold1708 WUBlastX LTR_Ngaro 69890 70282 41 + . . scaffold1708 TRF Tandem_Repeat 88096 89113 1670 + . . scaffold1708 TRF Tandem_Repeat 89327 89455 86 + . . scaffold1708 TRF Tandem_Repeat 103227 103293 71 + . . scaffold1708 TRF Tandem_Repeat 103792 103838 94 + . . scaffold1708 TRF Tandem_Repeat 106249 106315 62 + . . scaffold1708 TRF Tandem_Repeat 106249 106315 55 + . . scaffold1708 TRF Tandem_Repeat 107267 107298 64 + . . scaffold1709 GLEAN mRNA 13345 21621 0.999676 - . ID=CGI_10005341; scaffold1709 GLEAN promoter 21622 22621 0.999676 - . ID=CGI_10005341; scaffold1709 GLEAN mRNA 22589 24190 0.984563 - . ID=CGI_10005342; scaffold1709 GLEAN promoter 24191 25190 0.984563 - . ID=CGI_10005342; scaffold1709 GLEAN mRNA 24867 45427 0.594544 - . ID=CGI_10005343; scaffold1709 GLEAN promoter 45428 46427 0.594544 - . ID=CGI_10005343; scaffold1709 GLEAN mRNA 48853 83635 0.6526 - . ID=CGI_10005344; scaffold1709 GLEAN promoter 83636 84635 0.6526 - . ID=CGI_10005344; scaffold1709 GLEAN mRNA 83747 96660 0.654459 - . ID=CGI_10005345; scaffold1709 GLEAN promoter 96661 97660 0.654459 - . ID=CGI_10005345; scaffold1709 GLEAN promoter 102984 103983 1 + . ID=CGI_10005346; scaffold1709 GLEAN mRNA 103984 110008 1 + . ID=CGI_10005346; scaffold1709 GLEAN promoter 117956 118955 0.586108 + . ID=CGI_10005347; scaffold1709 GLEAN mRNA 118956 119720 0.586108 + . ID=CGI_10005347; scaffold1710 TRF Tandem_Repeat 5948 5984 74 + . . scaffold1710 TRF Tandem_Repeat 9237 10363 1698 + . . scaffold1710 TRF Tandem_Repeat 10394 10433 62 + . . scaffold1710 TRF Tandem_Repeat 12315 12352 58 + . . scaffold1710 WUBlastX LTR_Ngaro 12739 13044 135 + . . scaffold1710 WUBlastX LTR_Ngaro 13029 13778 210 + . . scaffold1710 WUBlastX LTR_Ngaro 14725 14865 25 + . . scaffold1710 WUBlastX LTR_Ngaro 14755 14892 20 + . . scaffold1710 WUBlastX LINE_RTE-X 15133 15537 37 + . . scaffold1710 GLEAN promoter 21769 22768 0.999946 + . ID=CGI_10022335; scaffold1710 GLEAN mRNA 22769 26100 0.999946 + . ID=CGI_10022335; scaffold1710 TRF Tandem_Repeat 29543 29585 86 + . . scaffold1710 TRF Tandem_Repeat 30375 30420 71 + . . scaffold1710 TRF Tandem_Repeat 30840 30877 76 + . . scaffold1710 TRF Tandem_Repeat 32915 33631 623 + . . scaffold1710 WUBlastX LTR_Gypsy 43286 43480 35 - . . scaffold1710 WUBlastX LTR_Gypsy 43322 43480 37 - . . scaffold1710 WUBlastX LTR_Gypsy 43403 43480 50 - . . scaffold1710 WUBlastX LTR_Gypsy 43485 43835 116 - . . scaffold1710 WUBlastX LTR_Gypsy 43769 43924 56 - . . scaffold1710 WUBlastX LTR_Gypsy 43930 44007 61 - . . scaffold1710 WUBlastX LTR_Gypsy 43995 44159 68 - . . scaffold1710 WUBlastX LTR_Gypsy 44028 44183 46 - . . scaffold1710 TRF Tandem_Repeat 49710 49748 78 + . . scaffold1710 TRF Tandem_Repeat 50060 50091 55 + . . scaffold1710 WUBlastX LINE_L2 50905 51471 36 - . . scaffold1710 WUBlastX LINE_RTE-X 51004 51486 98 - . . scaffold1710 WUBlastX LINE_CR1-L2 51495 51860 136 - . . scaffold1710 WUBlastX LINE_CR1-L2 51498 51797 143 - . . scaffold1710 WUBlastX LINE_Jockey 51854 52267 80 - . . scaffold1710 WUBlastX LINE_RTE-X 51875 52207 129 - . . scaffold1710 WUBlastX LINE_Jockey 51899 52177 139 - . . scaffold1710 WUBlastX LINE_Tad1? 52269 52763 44 - . . scaffold1710 WUBlastX LINE_Proto2 52398 53405 75 - . . scaffold1710 WUBlastX LINE_RTE-X 53160 53453 30 - . . scaffold1710 WUBlastX LINE_I 53461 53613 29 - . . scaffold1710 WUBlastX LINE_Jockey 53500 53625 38 - . . scaffold1710 TRF Tandem_Repeat 53971 54011 82 + . . scaffold1710 TRF Tandem_Repeat 55510 55568 118 + . . scaffold1710 TRF Tandem_Repeat 55602 55643 75 + . . scaffold1710 TRF Tandem_Repeat 60503 60561 109 + . . scaffold1710 TRF Tandem_Repeat 61984 62035 95 + . . scaffold1710 TRF Tandem_Repeat 62488 62665 148 + . . scaffold1710 TRF Tandem_Repeat 62960 63000 50 + . . scaffold1710 GLEAN promoter 65509 66508 0.877603 + . ID=CGI_10022336; scaffold1710 GLEAN mRNA 66509 80594 0.877603 + . ID=CGI_10022336; scaffold1710 TRF Tandem_Repeat 73914 73959 92 + . . scaffold1710 WUBlastX LTR_Gypsy 83118 83915 338 + . . scaffold1710 WUBlastX LTR_Gypsy 83820 83978 41 + . . scaffold1710 WUBlastX LTR_Gypsy 84201 84380 69 + . . scaffold1710 WUBlastX LTR_Gypsy 84243 84380 69 + . . scaffold1710 WUBlastX LTR_Gypsy 84376 84696 166 + . . scaffold1710 WUBlastX LTR_Gypsy 84642 84992 28 + . . scaffold1710 WUBlastX LTR_Gypsy 84800 85438 161 + . . scaffold1710 WUBlastX LTR_Gypsy 84947 85462 166 + . . scaffold1710 WUBlastX LTR_Gypsy 85025 85477 474 + . . scaffold1710 WUBlastX LTR_Gypsy 85456 86556 924 + . . scaffold1710 WUBlastX LTR_Gypsy 86473 86589 26 + . . scaffold1710 WUBlastX LTR_Gypsy 86584 88014 1228 + . . scaffold1710 GLEAN promoter 89933 90932 0.706307 + . ID=CGI_10022338; scaffold1710 GLEAN mRNA 90933 99909 0.706307 + . ID=CGI_10022338; scaffold1710 TRF Tandem_Repeat 96011 96066 51 + . . scaffold1710 GLEAN promoter 104805 105804 0.611008 + . ID=CGI_10022339; scaffold1710 GLEAN mRNA 105805 108404 0.611008 + . ID=CGI_10022339; scaffold1710 WUBlastX LINE_RTE-BovB 113363 113806 97 + . . scaffold1710 WUBlastX LINE_RTE-BovB 113602 113961 83 + . . scaffold1710 WUBlastX LINE_RTE-BovB 113958 114254 146 + . . scaffold1710 WUBlastX LINE_RTE-BovB 114272 114991 364 + . . scaffold1710 WUBlastX LINE_RTE-BovB 114994 115317 175 + . . scaffold1710 WUBlastX LINE_RTE-BovB 115321 115377 20 + . . scaffold1710 GLEAN promoter 115469 116468 0.985316 + . ID=CGI_10022340; scaffold1710 GLEAN mRNA 116469 121680 0.985316 + . ID=CGI_10022340; scaffold1710 GLEAN mRNA 125602 128192 0.889853 - . ID=CGI_10022341; scaffold1710 GLEAN promoter 128193 129192 0.889853 - . ID=CGI_10022341; scaffold1710 TRF Tandem_Repeat 131493 131549 114 + . . scaffold1710 GLEAN mRNA 132993 137298 0.651135 - . ID=CGI_10022342; scaffold1710 WUBlastX LINE_L1-Tx1 136229 136336 24 - . . scaffold1710 WUBlastX LINE_L1-Tx1 136330 136929 297 - . . scaffold1710 GLEAN promoter 137299 138298 0.651135 - . ID=CGI_10022342; scaffold1710 GLEAN mRNA 141204 155516 1 - . ID=CGI_10022343; scaffold1710 TRF Tandem_Repeat 142789 143387 733 + . . scaffold1710 TRF Tandem_Repeat 145010 145063 108 + . . scaffold1710 TRF Tandem_Repeat 145061 145099 78 + . . scaffold1710 TRF Tandem_Repeat 145202 145248 87 + . . scaffold1710 TRF Tandem_Repeat 145246 145281 72 + . . scaffold1710 TRF Tandem_Repeat 149725 149809 120 + . . scaffold1710 GLEAN promoter 155517 156516 1 - . ID=CGI_10022343; scaffold1710 GLEAN mRNA 157836 164518 0.62941 - . ID=CGI_10022344; scaffold1710 TRF Tandem_Repeat 158810 158992 176 + . . scaffold1710 TRF Tandem_Repeat 161512 161543 64 + . . scaffold1710 GLEAN promoter 164519 165518 0.62941 - . ID=CGI_10022344; scaffold1710 TRF Tandem_Repeat 167493 167629 231 + . . scaffold1710 TRF Tandem_Repeat 167501 167723 117 + . . scaffold1710 GLEAN promoter 186402 187401 1 + . ID=CGI_10022345; scaffold1710 TRF Tandem_Repeat 186907 186950 61 + . . scaffold1710 GLEAN mRNA 187402 188883 1 + . ID=CGI_10022345; scaffold1710 GLEAN mRNA 190634 205917 0.952752 - . ID=CGI_10022346; scaffold1710 GLEAN promoter 205918 206917 0.952752 - . ID=CGI_10022346; scaffold1710 TRF Tandem_Repeat 209054 209403 416 + . . scaffold1710 TRF Tandem_Repeat 209056 209403 363 + . . scaffold1710 TRF Tandem_Repeat 209056 209403 363 + . . scaffold1710 TRF Tandem_Repeat 210051 210310 331 + . . scaffold1710 TRF Tandem_Repeat 210051 210310 331 + . . scaffold1710 TRF Tandem_Repeat 210060 210313 352 + . . scaffold1710 TRF Tandem_Repeat 211916 211985 77 + . . scaffold1710 GLEAN mRNA 213328 218333 1 - . ID=CGI_10022347; scaffold1710 WUBlastX LINE_RTE-X 216207 216812 24 - . . scaffold1710 WUBlastX LINE_RTE-X 216207 216689 82 - . . scaffold1710 GLEAN promoter 218176 219175 0.595987 + . ID=CGI_10022348; scaffold1710 GLEAN promoter 218334 219333 1 - . ID=CGI_10022347; scaffold1710 GLEAN mRNA 219176 247557 0.595987 + . ID=CGI_10022348; scaffold1710 TRF Tandem_Repeat 227253 227502 215 + . . scaffold1710 TRF Tandem_Repeat 229472 229511 53 + . . scaffold1710 TRF Tandem_Repeat 229481 229523 50 + . . scaffold1710 TRF Tandem_Repeat 233736 233782 51 + . . scaffold1710 TRF Tandem_Repeat 239743 242075 4016 + . . scaffold1710 TRF Tandem_Repeat 243583 244041 792 + . . scaffold1710 TRF Tandem_Repeat 244945 245068 194 + . . scaffold1710 TRF Tandem_Repeat 250080 250299 350 + . . scaffold1710 TRF Tandem_Repeat 254866 255617 1148 + . . scaffold1710 TRF Tandem_Repeat 254866 256319 2113 + . . scaffold1710 TRF Tandem_Repeat 255616 256323 1089 + . . scaffold1710 GLEAN promoter 256605 257604 0.999676 + . ID=CGI_10022349; scaffold1710 TRF Tandem_Repeat 257352 257412 122 + . . scaffold1710 GLEAN mRNA 257605 268723 0.999676 + . ID=CGI_10022349; scaffold1710 TRF Tandem_Repeat 258912 258963 86 + . . scaffold1710 TRF Tandem_Repeat 259051 259087 60 + . . scaffold1710 TRF Tandem_Repeat 260982 261017 63 + . . scaffold1710 TRF Tandem_Repeat 266234 266484 261 + . . scaffold1710 GLEAN mRNA 269996 270556 0.989817 - . ID=CGI_10022350; scaffold1710 GLEAN promoter 270557 271556 0.989817 - . ID=CGI_10022350; scaffold1710 TRF Tandem_Repeat 271735 271935 190 + . . scaffold1710 GLEAN mRNA 276054 281018 0.933682 - . ID=CGI_10022351; scaffold1710 TRF Tandem_Repeat 277530 277579 100 + . . scaffold1710 TRF Tandem_Repeat 278700 278725 52 + . . scaffold1710 GLEAN promoter 281019 282018 0.933682 - . ID=CGI_10022351; scaffold1710 TRF Tandem_Repeat 285588 285619 55 + . . scaffold1710 GLEAN mRNA 295420 295899 0.999984 - . ID=CGI_10022352; scaffold1710 GLEAN promoter 295900 296899 0.999984 - . ID=CGI_10022352; scaffold1710 TRF Tandem_Repeat 300461 300508 96 + . . scaffold1710 GLEAN mRNA 303576 303908 0.733495 - . ID=CGI_10022353; scaffold1710 GLEAN promoter 303909 304908 0.733495 - . ID=CGI_10022353; scaffold1710 GLEAN mRNA 312268 319223 0.999849 - . ID=CGI_10022354; scaffold1710 GLEAN promoter 319224 320223 0.999849 - . ID=CGI_10022354; scaffold1710 WUBlastX LINE_RTE-BovB 321655 321747 46 - . . scaffold1710 GLEAN promoter 333159 334158 0.996244 + . ID=CGI_10022355; scaffold1710 GLEAN mRNA 334159 370310 0.996244 + . ID=CGI_10022355; scaffold1710 TRF Tandem_Repeat 335372 336128 1051 + . . scaffold1710 TRF Tandem_Repeat 364984 365028 90 + . . scaffold1710 TRF Tandem_Repeat 365128 365241 189 + . . scaffold1710 GLEAN promoter 369477 370476 0.734554 + . ID=CGI_10022356; scaffold1710 GLEAN mRNA 370477 371708 0.734554 + . ID=CGI_10022356; scaffold1710 GLEAN promoter 374366 375365 0.993769 + . ID=CGI_10022357; scaffold1710 GLEAN mRNA 375366 376393 0.993769 + . ID=CGI_10022357; scaffold1710 GLEAN promoter 375581 376580 0.480572 + . ID=CGI_10022358; scaffold1710 GLEAN mRNA 376581 376985 0.480572 + . ID=CGI_10022358; scaffold1710 GLEAN promoter 377485 378484 1 + . ID=CGI_10022360; scaffold1710 GLEAN mRNA 377961 378349 0.993507 - . ID=CGI_10022359; scaffold1710 GLEAN promoter 378350 379349 0.993507 - . ID=CGI_10022359; scaffold1710 GLEAN mRNA 378485 379708 1 + . ID=CGI_10022360; scaffold1710 GLEAN mRNA 380892 387932 0.986651 - . ID=CGI_10022361; scaffold1710 TRF Tandem_Repeat 383472 383512 82 + . . scaffold1710 GLEAN promoter 387933 388932 0.986651 - . ID=CGI_10022361; scaffold1710 GLEAN mRNA 390230 393292 1 - . ID=CGI_10022362; scaffold1710 GLEAN promoter 393293 394292 1 - . ID=CGI_10022362; scaffold1710 TRF Tandem_Repeat 401294 401348 103 + . . scaffold1710 GLEAN promoter 406041 407040 1 + . ID=CGI_10022363; scaffold1710 GLEAN mRNA 407041 409371 1 + . ID=CGI_10022363; scaffold1710 TRF Tandem_Repeat 413563 413592 51 + . . scaffold1710 TRF Tandem_Repeat 423809 423856 96 + . . scaffold1710 TRF Tandem_Repeat 424947 425034 135 + . . scaffold1710 GLEAN promoter 427048 428047 0.147778 + . ID=CGI_10022364; scaffold1710 GLEAN mRNA 428048 437016 0.147778 + . ID=CGI_10022364; scaffold1710 TRF Tandem_Repeat 438215 438263 89 + . . scaffold1710 GLEAN mRNA 442099 451636 0.57594 - . ID=CGI_10022365; scaffold1710 GLEAN promoter 451637 452636 0.57594 - . ID=CGI_10022365; scaffold1710 WUBlastX DNA_IS4EU 458725 459183 106 + . . scaffold1710 WUBlastX DNA_IS4EU 465872 466957 325 + . . scaffold1710 WUBlastX DNA_Kolobok-IS4 466100 466954 342 + . . scaffold1710 WUBlastX DNA_IS4EU 467309 467533 62 - . . scaffold1710 WUBlastX LTR_Gypsy 467743 467961 37 + . . scaffold1710 WUBlastX LTR_Gypsy 467785 467961 39 + . . scaffold1710 WUBlastX LTR_Gypsy 467812 469287 1058 + . . scaffold1710 GLEAN promoter 468871 469870 1 + . ID=CGI_10022366; scaffold1710 GLEAN mRNA 469871 478742 1 + . ID=CGI_10022366; scaffold1710 WUBlastX DNA_Crypton 481487 481765 71 + . . scaffold1710 TRF Tandem_Repeat 482077 482130 99 + . . scaffold1710 TRF Tandem_Repeat 483661 483700 80 + . . scaffold1710 TRF Tandem_Repeat 484082 484131 84 + . . scaffold1710 WUBlastX LINE_RTE-X 485002 485376 72 + . . scaffold1710 WUBlastX LINE_RTE-X 485373 485798 92 + . . scaffold1710 TRF Tandem_Repeat 486017 486057 73 + . . scaffold1710 WUBlastX DNA_Sola 487647 487967 88 - . . scaffold1710 WUBlastX DNA_Sola 487698 487967 100 - . . scaffold1710 WUBlastX DNA_Sola 487740 487958 102 - . . scaffold1710 WUBlastX DNA_Sola 487888 488460 101 - . . scaffold1710 WUBlastX DNA_Sola 488305 488736 182 - . . scaffold1710 WUBlastX DNA_Sola 489260 489520 100 - . . scaffold1710 WUBlastX DNA_Sola 489281 489478 151 - . . scaffold1710 WUBlastX DNA_Sola 489682 490902 606 - . . scaffold1710 GLEAN promoter 504144 505143 0.997318 + . ID=CGI_10022368; scaffold1710 GLEAN mRNA 505144 530486 0.997318 + . ID=CGI_10022368; scaffold1710 TRF Tandem_Repeat 507045 507090 83 + . . scaffold1710 TRF Tandem_Repeat 517638 517685 87 + . . scaffold1710 TRF Tandem_Repeat 526533 528114 2273 + . . scaffold1710 TRF Tandem_Repeat 529058 529204 73 + . . scaffold1710 TRF Tandem_Repeat 529120 529249 93 + . . scaffold1710 GLEAN promoter 529875 530874 0.998159 + . ID=CGI_10022369; scaffold1710 GLEAN mRNA 530875 532602 0.998159 + . ID=CGI_10022369; scaffold1710 TRF Tandem_Repeat 537280 537315 72 + . . scaffold1710 TRF Tandem_Repeat 537530 537586 96 + . . scaffold1710 WUBlastX LTR_Gypsy-Cigr 547774 548274 80 - . . scaffold1710 WUBlastX LTR_Gypsy-Cigr 548351 548677 37 - . . scaffold1710 TRF Tandem_Repeat 559063 559117 51 + . . scaffold1710 TRF Tandem_Repeat 561312 561368 50 + . . scaffold1710 TRF Tandem_Repeat 561321 561368 51 + . . scaffold1710 TRF Tandem_Repeat 564381 564447 116 + . . scaffold1710 TRF Tandem_Repeat 583297 583349 70 + . . scaffold1710 TRF Tandem_Repeat 583298 583349 68 + . . scaffold1710 TRF Tandem_Repeat 583310 583348 51 + . . scaffold1710 TRF Tandem_Repeat 586191 586246 71 + . . scaffold1710 TRF Tandem_Repeat 586195 586249 65 + . . scaffold1710 GLEAN promoter 594295 595294 0.998932 + . ID=CGI_10022371; scaffold1710 GLEAN mRNA 595295 602666 0.998932 + . ID=CGI_10022371; scaffold1710 GLEAN promoter 602742 603741 0.95382 + . ID=CGI_10022372; scaffold1710 GLEAN mRNA 603742 700546 0.95382 + . ID=CGI_10022372; scaffold1710 TRF Tandem_Repeat 611596 611638 59 + . . scaffold1710 TRF Tandem_Repeat 625600 625630 62 + . . scaffold1710 TRF Tandem_Repeat 647420 647478 109 + . . scaffold1710 TRF Tandem_Repeat 649295 649355 122 + . . scaffold1710 TRF Tandem_Repeat 695524 695555 64 + . . scaffold1710 TRF Tandem_Repeat 709896 709945 100 + . . scaffold1710 GLEAN mRNA 716235 735298 0.587067 - . ID=CGI_10022373; scaffold1710 TRF Tandem_Repeat 716752 716857 194 + . . scaffold1710 TRF Tandem_Repeat 716855 716941 174 + . . scaffold1710 TRF Tandem_Repeat 719004 719450 352 + . . scaffold1710 TRF Tandem_Repeat 719013 719351 309 + . . scaffold1710 TRF Tandem_Repeat 719013 719450 234 + . . scaffold1710 TRF Tandem_Repeat 719019 719450 376 + . . scaffold1710 TRF Tandem_Repeat 719283 719380 99 + . . scaffold1710 TRF Tandem_Repeat 719404 719462 61 + . . scaffold1710 WUBlastX LINE_R2-Hero 723110 723217 72 + . . scaffold1710 WUBlastX LINE_R2-Hero 723229 723381 45 + . . scaffold1710 GLEAN promoter 735299 736298 0.587067 - . ID=CGI_10022373; scaffold1710 GLEAN mRNA 741691 745890 1 - . ID=CGI_10022374; scaffold1710 GLEAN promoter 745891 746890 1 - . ID=CGI_10022374; scaffold1711 WUBlastX LINE_RTE-X 1 594 116 - . . scaffold1711 WUBlastX LINE_RTE-BovB 313 675 83 - . . scaffold1711 GLEAN mRNA 1034 11661 0.79138 - . ID=CGI_10015594; scaffold1711 GLEAN promoter 11662 12661 0.79138 - . ID=CGI_10015594; scaffold1711 TRF Tandem_Repeat 12101 12126 52 + . . scaffold1711 WUBlastX LINE_L1-Tx1 14986 15561 136 - . . scaffold1711 WUBlastX LINE_L1-Tx1 15561 17171 902 - . . scaffold1711 WUBlastX LINE_L2 16230 17393 31 - . . scaffold1711 GLEAN promoter 18250 19249 0.598612 + . ID=CGI_10015595; scaffold1711 GLEAN mRNA 19250 25931 0.598612 + . ID=CGI_10015595; scaffold1711 TRF Tandem_Repeat 19560 19591 64 + . . scaffold1711 WUBlastX LINE_RTE-X 23183 23524 32 + . . scaffold1711 WUBlastX LINE_RTE-X 23210 23452 55 + . . scaffold1711 GLEAN mRNA 26456 31207 1 - . ID=CGI_10015596; scaffold1711 GLEAN promoter 30559 31558 1 + . ID=CGI_10015597; scaffold1711 GLEAN promoter 31208 32207 1 - . ID=CGI_10015596; scaffold1711 GLEAN mRNA 31559 33882 1 + . ID=CGI_10015597; scaffold1711 GLEAN mRNA 39044 50534 0.279157 - . ID=CGI_10015598; scaffold1711 TRF Tandem_Repeat 46825 47166 549 + . . scaffold1711 TRF Tandem_Repeat 47844 48158 531 + . . scaffold1711 GLEAN promoter 50535 51534 0.279157 - . ID=CGI_10015598; scaffold1711 GLEAN promoter 64819 65818 0.511931 + . ID=CGI_10015600; scaffold1711 GLEAN mRNA 65819 90414 0.511931 + . ID=CGI_10015600; scaffold1711 TRF Tandem_Repeat 69855 69976 167 + . . scaffold1711 GLEAN mRNA 71663 72970 1 - . ID=CGI_10015601; scaffold1711 GLEAN promoter 72971 73970 1 - . ID=CGI_10015601; scaffold1711 TRF Tandem_Repeat 86580 86671 94 + . . scaffold1711 TRF Tandem_Repeat 88167 88266 134 + . . scaffold1711 TRF Tandem_Repeat 88169 88274 92 + . . scaffold1711 TRF Tandem_Repeat 91792 91822 62 + . . scaffold1711 WUBlastX LTR_Pao 98240 98416 62 - . . scaffold1711 WUBlastX LTR_Pao 98255 98389 71 - . . scaffold1711 WUBlastX LTR_Pao 98403 98639 70 - . . scaffold1711 WUBlastX LTR_Pao 98421 98618 158 - . . scaffold1711 WUBlastX LTR_Pao 98638 100026 926 - . . scaffold1711 WUBlastX LTR_Pao 100005 100178 120 - . . scaffold1711 WUBlastX LTR_Pao 100144 100350 114 - . . scaffold1711 WUBlastX LTR_Pao 100893 102932 734 - . . scaffold1711 WUBlastX LTR_Pao 100929 102602 821 - . . scaffold1711 GLEAN promoter 104948 105947 0.545904 + . ID=CGI_10015602; scaffold1711 GLEAN mRNA 105948 106424 0.545904 + . ID=CGI_10015602; scaffold1711 TRF Tandem_Repeat 115648 115697 59 + . . scaffold1711 TRF Tandem_Repeat 133332 133361 60 + . . scaffold1711 WUBlastX LINE_RTE-X 149090 149950 272 - . . scaffold1711 WUBlastX LINE_Penelope 189520 189852 31 - . . scaffold1711 WUBlastX LINE_Penelope 189633 190298 218 - . . scaffold1711 WUBlastX LINE_Penelope 189633 190424 100 - . . scaffold1711 TRF Tandem_Repeat 193083 193133 102 + . . scaffold1711 WUBlastX LINE_RTE-BovB 201511 201669 69 - . . scaffold1711 TRF Tandem_Repeat 215547 215578 64 + . . scaffold1711 TRF Tandem_Repeat 216334 216358 50 + . . scaffold1711 TRF Tandem_Repeat 223899 223940 84 + . . scaffold1711 TRF Tandem_Repeat 233642 235176 1315 + . . scaffold1711 TRF Tandem_Repeat 233659 235176 1594 + . . scaffold1711 GLEAN promoter 243568 244567 0.59015 + . ID=CGI_10015603; scaffold1711 GLEAN mRNA 244568 245134 0.59015 + . ID=CGI_10015603; scaffold1711 WUBlastX DNA_Maverick 245479 245913 73 + . . scaffold1711 WUBlastX DNA_Maverick 245727 245873 95 + . . scaffold1711 TRF Tandem_Repeat 246163 246913 908 + . . scaffold1711 GLEAN mRNA 257829 258499 0.999986 - . ID=CGI_10015604; scaffold1711 GLEAN promoter 258500 259499 0.999986 - . ID=CGI_10015604; scaffold1711 TRF Tandem_Repeat 259123 259752 459 + . . scaffold1711 TRF Tandem_Repeat 259155 259869 370 + . . scaffold1711 GLEAN mRNA 261756 269883 1 - . ID=CGI_10015605; scaffold1711 GLEAN promoter 269884 270883 1 - . ID=CGI_10015605; scaffold1711 TRF Tandem_Repeat 271687 271740 60 + . . scaffold1711 TRF Tandem_Repeat 271687 271740 59 + . . scaffold1711 TRF Tandem_Repeat 271695 271732 62 + . . scaffold1711 GLEAN promoter 275782 276781 0.999675 + . ID=CGI_10015606; scaffold1711 GLEAN mRNA 276782 279261 0.999675 + . ID=CGI_10015606; scaffold1711 GLEAN promoter 278894 279893 0.999676 + . ID=CGI_10015607; scaffold1711 GLEAN mRNA 279894 293275 0.999676 + . ID=CGI_10015607; scaffold1711 TRF Tandem_Repeat 289592 290387 1290 + . . scaffold1711 GLEAN promoter 295893 296892 1 + . ID=CGI_10015608; scaffold1711 GLEAN mRNA 296893 301641 1 + . ID=CGI_10015608; scaffold1711 TRF Tandem_Repeat 300345 300622 227 + . . scaffold1711 GLEAN mRNA 302050 319265 0.999978 - . ID=CGI_10015609; scaffold1711 TRF Tandem_Repeat 314203 314234 64 + . . scaffold1711 TRF Tandem_Repeat 318155 318282 89 + . . scaffold1711 TRF Tandem_Repeat 318329 318675 181 + . . scaffold1711 TRF Tandem_Repeat 318436 318709 126 + . . scaffold1711 GLEAN promoter 319266 320265 0.999978 - . ID=CGI_10015609; scaffold1711 WUBlastX LINE_RTE-X 320483 320668 84 + . . scaffold1711 WUBlastX LINE_L2 320510 320725 27 + . . scaffold1711 WUBlastX LINE_CR1 320730 320822 28 + . . scaffold1711 WUBlastX LINE_RTE-X 320748 320825 57 + . . scaffold1711 WUBlastX LINE_RTE-X 320748 320879 37 + . . scaffold1711 WUBlastX LINE_RTE-X 321804 322553 151 + . . scaffold1711 WUBlastX LINE_RTE-X 322828 323115 53 + . . scaffold1711 WUBlastX LINE_RTE-X 322873 323115 87 + . . scaffold1711 GLEAN promoter 323221 324220 0.894424 + . ID=CGI_10015610; scaffold1711 GLEAN mRNA 324221 325883 0.894424 + . ID=CGI_10015610; scaffold1711 TRF Tandem_Repeat 330113 330185 137 + . . scaffold1711 WUBlastX DNA_IS4EU 333503 333628 50 + . . scaffold1711 WUBlastX DNA_IS4EU 334399 335298 365 + . . scaffold1711 WUBlastX DNA_IS4EU 334555 335280 416 + . . scaffold1711 WUBlastX DNA_IS4EU 335677 335916 53 - . . scaffold1711 WUBlastX DNA_Kolobok-IS4 335934 336293 108 - . . scaffold1711 GLEAN promoter 338141 339140 0.69447 + . ID=CGI_10015611; scaffold1711 WUBlastX LTR_Gypsy-Cigr 338556 339047 171 + . . scaffold1711 WUBlastX LTR_Gypsy 338649 339308 34 + . . scaffold1711 WUBlastX LTR_Gypsy 338649 339170 70 + . . scaffold1711 GLEAN mRNA 339141 339371 0.69447 + . ID=CGI_10015611; scaffold1711 WUBlastX LTR_Gypsy 339481 340017 41 + . . scaffold1711 WUBlastX LTR_Gypsy-Cigr 339685 340017 68 + . . scaffold1711 GLEAN promoter 340811 341810 0.999555 + . ID=CGI_10015612; scaffold1711 GLEAN mRNA 341811 351623 0.999555 + . ID=CGI_10015612; scaffold1711 WUBlastX LTR_Gypsy-Cigr 342220 342450 85 - . . scaffold1711 TRF Tandem_Repeat 344393 344520 127 + . . scaffold1711 WUBlastX LINE_L1 346840 346986 53 + . . scaffold1711 TRF Tandem_Repeat 353002 353927 418 + . . scaffold1711 TRF Tandem_Repeat 353321 353927 523 + . . scaffold1711 WUBlastX LINE_CR1-L2 358767 359039 31 - . . scaffold1711 WUBlastX LINE_L2 358969 359274 60 - . . scaffold1711 WUBlastX LINE_CR1-L2 359047 359409 82 - . . scaffold1711 WUBlastX LINE_CR1-L2 359047 359349 129 - . . scaffold1711 TRF Tandem_Repeat 370500 370700 197 + . . scaffold1711 TRF Tandem_Repeat 372136 372767 555 + . . scaffold1711 GLEAN promoter 373065 374064 0.993176 + . ID=CGI_10015613; scaffold1711 GLEAN mRNA 374065 410204 0.993176 + . ID=CGI_10015613; scaffold1711 TRF Tandem_Repeat 388711 388854 243 + . . scaffold1711 GLEAN mRNA 415742 428010 0.51732 - . ID=CGI_10015614; scaffold1711 GLEAN promoter 428011 429010 0.51732 - . ID=CGI_10015614; scaffold1712 GLEAN promoter 1 323 0.999994 + . ID=CGI_10000721; scaffold1712 GLEAN mRNA 324 7089 0.999994 + . ID=CGI_10000721; scaffold1713 GLEAN promoter 3746 4745 0.995615 + . ID=CGI_10004220; scaffold1713 GLEAN mRNA 4746 19750 0.995615 + . ID=CGI_10004220; scaffold1713 GLEAN mRNA 44493 48376 0.515629 - . ID=CGI_10004221; scaffold1713 GLEAN promoter 48377 49376 0.515629 - . ID=CGI_10004221; scaffold1713 GLEAN mRNA 48566 49171 0.585083 - . ID=CGI_10004222; scaffold1713 GLEAN promoter 49172 50171 0.585083 - . ID=CGI_10004222; scaffold1713 GLEAN mRNA 86680 86868 1 - . ID=CGI_10004223; scaffold1713 GLEAN promoter 86869 87868 1 - . ID=CGI_10004223; scaffold1714 GLEAN mRNA 1754 6575 0.999186 - . ID=CGI_10013672; scaffold1714 GLEAN promoter 6576 7575 0.999186 - . ID=CGI_10013672; scaffold1714 WUBlastX LINE_L2 21130 21171 23 + . . scaffold1714 WUBlastX LINE_RTE-X 21841 21939 21 + . . scaffold1714 WUBlastX LINE_RTE-X 21853 21936 37 + . . scaffold1714 WUBlastX LINE_RTE-X 21862 21930 41 + . . scaffold1714 WUBlastX LINE_L2 21948 22829 74 + . . scaffold1714 WUBlastX LINE_RTE-X 22095 22841 278 + . . scaffold1714 WUBlastX LINE_RTE-X 22807 22965 52 + . . scaffold1714 WUBlastX LINE_CR1 23120 23155 20 + . . scaffold1714 TRF Tandem_Repeat 24083 24117 61 + . . scaffold1714 TRF Tandem_Repeat 24374 24418 90 + . . scaffold1714 GLEAN mRNA 25695 26423 0.575106 - . ID=CGI_10013673; scaffold1714 GLEAN promoter 26424 27423 0.575106 - . ID=CGI_10013673; scaffold1714 WUBlastX LTR_Pao 26621 26797 53 - . . scaffold1714 WUBlastX LTR_Pao 26669 26893 63 - . . scaffold1714 WUBlastX LTR_Gypsy-Cigr 26898 27962 398 - . . scaffold1714 WUBlastX LTR_Gypsy 27111 27962 576 - . . scaffold1714 WUBlastX LTR_Gypsy 27971 29161 515 - . . scaffold1714 WUBlastX LTR_Gypsy 28163 30079 914 - . . scaffold1714 WUBlastX LTR_Gypsy-Cigr 29651 30175 51 - . . scaffold1714 WUBlastX LTR_Gypsy 29822 30409 34 - . . scaffold1714 WUBlastX LTR_Copia 30540 30782 61 - . . scaffold1714 WUBlastX LTR_Gypsy 30579 31487 62 - . . scaffold1714 WUBlastX LTR_Gypsy 30900 31538 88 - . . scaffold1714 WUBlastX LTR_Gypsy-Cigr 31041 31523 90 - . . scaffold1714 TRF Tandem_Repeat 49664 49701 62 + . . scaffold1714 TRF Tandem_Repeat 65178 65221 70 + . . scaffold1714 TRF Tandem_Repeat 65178 65232 56 + . . scaffold1714 TRF Tandem_Repeat 65256 66048 1025 + . . scaffold1714 TRF Tandem_Repeat 70084 70125 75 + . . scaffold1714 WUBlastX LTR_Gypsy 70185 70748 211 - . . scaffold1714 WUBlastX LTR_Gypsy 70188 70622 225 - . . scaffold1714 WUBlastX LTR_Gypsy 70260 70619 239 - . . scaffold1714 WUBlastX LTR_Gypsy 70281 70835 149 - . . scaffold1714 WUBlastX LTR_Gypsy 71510 71614 22 - . . scaffold1714 WUBlastX LTR_Gypsy 71854 72513 192 - . . scaffold1714 WUBlastX LTR_Gypsy-Cigr 72001 72924 419 - . . scaffold1714 WUBlastX LTR_Gypsy 72986 73420 48 - . . scaffold1714 WUBlastX LTR_Gypsy 73070 73348 57 - . . scaffold1714 WUBlastX LTR_Gypsy 74277 74471 29 - . . scaffold1714 WUBlastX LTR_Pao 81938 83914 180 + . . scaffold1714 WUBlastX LTR_Pao 82343 84022 514 + . . scaffold1714 WUBlastX LTR_Pao 82874 84034 569 + . . scaffold1714 WUBlastX LTR_Pao 84042 85826 1346 + . . scaffold1714 WUBlastX LTR_Pao 85837 87348 1179 + . . scaffold1714 WUBlastX LTR_Pao 87339 87575 209 + . . scaffold1714 WUBlastX LTR_Pao 87509 87907 308 + . . scaffold1714 WUBlastX LTR_Gypsy 96319 96411 20 - . . scaffold1714 WUBlastX LTR_Gypsy 96808 97473 381 - . . scaffold1714 TRF Tandem_Repeat 97943 97998 87 + . . scaffold1714 TRF Tandem_Repeat 98032 98089 80 + . . scaffold1714 TRF Tandem_Repeat 104555 104612 116 + . . scaffold1714 TRF Tandem_Repeat 105217 105280 101 + . . scaffold1714 TRF Tandem_Repeat 105311 106597 1811 + . . scaffold1714 TRF Tandem_Repeat 110568 110644 154 + . . scaffold1714 WUBlastX LINE_L1-Tx1 128377 128631 22 - . . scaffold1714 WUBlastX LINE_L1-Tx1 128443 128976 158 - . . scaffold1714 WUBlastX LINE_L1-Tx1 129588 129980 83 - . . scaffold1714 WUBlastX LINE_L1-Tx1 129817 130206 104 - . . scaffold1714 WUBlastX LINE_L1-Tx1 129934 130215 157 - . . scaffold1714 WUBlastX LINE_L1-Tx1 129949 130878 95 - . . scaffold1714 WUBlastX LINE_L1-Tx1 130486 130878 338 - . . scaffold1714 WUBlastX LINE_L1 130489 130998 138 - . . scaffold1714 WUBlastX LINE_L1-Tx1 133151 133750 85 - . . scaffold1714 WUBlastX LINE_L1-Tx1 134456 134701 53 - . . scaffold1714 WUBlastX LINE_L1 134525 134662 54 - . . scaffold1714 WUBlastX LINE_L1-Tx1 134562 135317 72 - . . scaffold1714 WUBlastX LINE_L1 134676 137228 267 - . . scaffold1714 WUBlastX LINE_L1-Tx1 135268 135726 359 - . . scaffold1714 WUBlastX LINE_L1-Tx1 135699 137207 535 - . . scaffold1714 TRF Tandem_Repeat 148681 148748 136 + . . scaffold1714 TRF Tandem_Repeat 150534 150571 67 + . . scaffold1714 TRF Tandem_Repeat 150573 150606 68 + . . scaffold1714 TRF Tandem_Repeat 154693 157003 3103 + . . scaffold1714 TRF Tandem_Repeat 167710 167765 103 + . . scaffold1714 TRF Tandem_Repeat 195270 195300 62 + . . scaffold1714 WUBlastX DNA_Sola 198021 198803 37 + . . scaffold1714 WUBlastX DNA_Sola 198210 198794 39 + . . scaffold1714 WUBlastX DNA_Sola 198312 198773 49 + . . scaffold1714 WUBlastX DNA_Sola 198495 198932 44 + . . scaffold1714 TRF Tandem_Repeat 207481 207571 94 + . . scaffold1714 WUBlastX DNA_Sola 207578 208006 95 + . . scaffold1714 WUBlastX DNA_Kolobok-IS4 213539 213904 43 + . . scaffold1714 WUBlastX DNA_Kolobok-IS4 214244 214381 85 + . . scaffold1714 WUBlastX DNA_IS4EU 214489 214635 23 + . . scaffold1714 WUBlastX DNA_IS4EU 214489 214674 21 + . . scaffold1714 WUBlastX DNA_IS4EU 214501 214605 24 + . . scaffold1714 WUBlastX DNA_Kolobok-IS4 215213 215890 193 + . . scaffold1714 GLEAN mRNA 216267 217025 1 - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_IS4EU 216276 217277 457 - . . scaffold1714 WUBlastX DNA_IS4EU 216279 217037 478 - . . scaffold1714 GLEAN promoter 217026 218025 1 - . ID=CGI_10013674; scaffold1714 WUBlastX DNA_IS4EU 217838 218188 37 - . . scaffold1714 WUBlastX DNA_IS4EU 217904 218230 42 - . . scaffold1714 WUBlastX DNA_hAT-Tip100 217958 218188 55 - . . scaffold1714 WUBlastX LINE_L1-Tx1 221916 222230 22 + . . scaffold1714 WUBlastX LINE_L1-Tx1 221937 222191 28 + . . scaffold1714 WUBlastX LTR_Gypsy 226396 230310 3229 - . . scaffold1714 GLEAN mRNA 234382 234606 1 - . ID=CGI_10013675; scaffold1714 GLEAN promoter 234607 235606 1 - . ID=CGI_10013675; scaffold1714 TRF Tandem_Repeat 235162 236337 1387 + . . scaffold1714 WUBlastX LTR_Gypsy 237799 238653 186 - . . scaffold1714 WUBlastX LTR_Gypsy 237838 238563 209 - . . scaffold1714 WUBlastX LINE_L2 243607 244170 38 + . . scaffold1714 WUBlastX LINE_L2 243760 244101 43 + . . scaffold1714 WUBlastX LINE_L2 243916 244083 64 + . . scaffold1714 WUBlastX LINE_CR1 243946 244101 75 + . . scaffold1714 WUBlastX LINE_CR1 243976 244146 81 + . . scaffold1714 WUBlastX LINE_CR1-L2 244139 244705 141 + . . scaffold1714 WUBlastX LINE_CR1-L2 244313 244726 150 + . . scaffold1714 WUBlastX LINE_L2 244872 244988 32 + . . scaffold1714 WUBlastX LINE_L2 245199 245333 32 + . . scaffold1714 WUBlastX LINE_CR1-L2 245296 245400 21 + . . scaffold1714 TRF Tandem_Repeat 247450 247489 80 + . . scaffold1714 TRF Tandem_Repeat 248246 248272 54 + . . scaffold1714 GLEAN promoter 248676 249675 1 + . ID=CGI_10013676; scaffold1714 GLEAN mRNA 249676 265575 1 + . ID=CGI_10013676; scaffold1714 TRF Tandem_Repeat 251551 252900 1691 + . . scaffold1714 TRF Tandem_Repeat 251551 252900 1712 + . . scaffold1714 TRF Tandem_Repeat 257350 257828 822 + . . scaffold1714 TRF Tandem_Repeat 257350 257828 787 + . . scaffold1714 TRF Tandem_Repeat 260640 260667 56 + . . scaffold1714 TRF Tandem_Repeat 260668 260697 60 + . . scaffold1714 TRF Tandem_Repeat 260873 260908 72 + . . scaffold1714 TRF Tandem_Repeat 265405 265480 152 + . . scaffold1714 GLEAN mRNA 267940 269223 0.558382 - . ID=CGI_10013677; scaffold1714 GLEAN promoter 269224 270223 0.558382 - . ID=CGI_10013677; scaffold1714 TRF Tandem_Repeat 274709 274899 104 + . . scaffold1714 TRF Tandem_Repeat 277796 277823 56 + . . scaffold1714 GLEAN promoter 278915 279914 0.99763 + . ID=CGI_10013678; scaffold1714 GLEAN mRNA 279915 301079 0.99763 + . ID=CGI_10013678; scaffold1714 TRF Tandem_Repeat 283562 283911 700 + . . scaffold1714 TRF Tandem_Repeat 284441 285576 1687 + . . scaffold1714 TRF Tandem_Repeat 287384 287433 100 + . . scaffold1714 TRF Tandem_Repeat 289582 289729 188 + . . scaffold1714 TRF Tandem_Repeat 294095 294511 304 + . . scaffold1714 TRF Tandem_Repeat 294170 294526 378 + . . scaffold1714 TRF Tandem_Repeat 294170 294423 147 + . . scaffold1714 TRF Tandem_Repeat 294313 294550 148 + . . scaffold1714 TRF Tandem_Repeat 295531 295801 398 + . . scaffold1714 TRF Tandem_Repeat 299455 299864 650 + . . scaffold1714 GLEAN promoter 304340 305339 1 + . ID=CGI_10013679; scaffold1714 GLEAN mRNA 305340 305735 1 + . ID=CGI_10013679; scaffold1714 GLEAN promoter 305589 306588 0.999557 + . ID=CGI_10013680; scaffold1714 GLEAN mRNA 306589 325335 0.999557 + . ID=CGI_10013680; scaffold1714 TRF Tandem_Repeat 307657 308126 609 + . . scaffold1714 WUBlastX LINE_L2 311159 311323 31 - . . scaffold1714 WUBlastX LINE_CR1 311251 311829 41 - . . scaffold1714 WUBlastX LINE_L2 311338 311820 183 - . . scaffold1714 WUBlastX LINE_I 311581 311868 65 - . . scaffold1714 WUBlastX LINE_CR1 311877 312044 43 - . . scaffold1714 WUBlastX LINE_L2 311883 312014 65 - . . scaffold1714 WUBlastX LINE_L2 312035 312217 113 - . . scaffold1714 WUBlastX LINE_L2 312214 312456 116 - . . scaffold1714 WUBlastX LINE_L2 312426 312563 51 - . . scaffold1714 WUBlastX LINE_L2 312426 312605 37 - . . scaffold1714 WUBlastX LINE_L2 312465 312635 20 - . . scaffold1714 TRF Tandem_Repeat 314340 314380 82 + . . scaffold1714 TRF Tandem_Repeat 315472 315499 56 + . . scaffold1714 TRF Tandem_Repeat 316042 316088 85 + . . scaffold1714 TRF Tandem_Repeat 357497 358236 1246 + . . scaffold1714 WUBlastX DNA_Harbinger 363099 363245 59 + . . scaffold1714 WUBlastX DNA_Harbinger 363242 363559 151 + . . scaffold1714 WUBlastX DNA_Harbinger 363556 363981 158 + . . scaffold1714 WUBlastX DNA_Harbinger 363556 364071 112 + . . scaffold1715 GLEAN promoter 3936 4935 0.469378 + . ID=CGI_10019659; scaffold1715 GLEAN mRNA 4936 29728 0.469378 + . ID=CGI_10019659; scaffold1715 TRF Tandem_Repeat 23506 23559 108 + . . scaffold1715 TRF Tandem_Repeat 25650 25678 51 + . . scaffold1715 WUBlastX LINE_R2-Hero 26436 26993 112 - . . scaffold1715 GLEAN promoter 49141 50140 0.843431 + . ID=CGI_10019660; scaffold1715 GLEAN mRNA 50141 53699 0.843431 + . ID=CGI_10019660; scaffold1715 GLEAN promoter 58716 59715 0.926412 + . ID=CGI_10019661; scaffold1715 GLEAN mRNA 59716 72434 0.926412 + . ID=CGI_10019661; scaffold1715 TRF Tandem_Repeat 61941 61982 84 + . . scaffold1715 TRF Tandem_Repeat 64650 64701 104 + . . scaffold1715 TRF Tandem_Repeat 75858 76372 416 + . . scaffold1715 TRF Tandem_Repeat 76039 76171 93 + . . scaffold1715 TRF Tandem_Repeat 76073 76199 89 + . . scaffold1715 TRF Tandem_Repeat 82180 82212 66 + . . scaffold1715 TRF Tandem_Repeat 82878 82987 114 + . . scaffold1715 TRF Tandem_Repeat 82910 83131 167 + . . scaffold1715 TRF Tandem_Repeat 83181 83329 194 + . . scaffold1715 TRF Tandem_Repeat 83189 83376 155 + . . scaffold1715 TRF Tandem_Repeat 83189 83376 152 + . . scaffold1715 TRF Tandem_Repeat 83252 83376 114 + . . scaffold1715 TRF Tandem_Repeat 83411 83602 123 + . . scaffold1715 TRF Tandem_Repeat 83447 83646 127 + . . scaffold1715 GLEAN promoter 87505 88504 0.96957 + . ID=CGI_10019662; scaffold1715 TRF Tandem_Repeat 87865 87904 80 + . . scaffold1715 TRF Tandem_Repeat 87959 88481 783 + . . scaffold1715 TRF Tandem_Repeat 87959 88481 753 + . . scaffold1715 GLEAN mRNA 88505 113380 0.96957 + . ID=CGI_10019662; scaffold1715 TRF Tandem_Repeat 89469 89554 165 + . . scaffold1715 TRF Tandem_Repeat 108314 108375 115 + . . scaffold1715 GLEAN promoter 118824 119823 1 + . ID=CGI_10019663; scaffold1715 TRF Tandem_Repeat 119044 119081 76 + . . scaffold1715 GLEAN mRNA 119824 133861 1 + . ID=CGI_10019663; scaffold1715 TRF Tandem_Repeat 125246 125306 65 + . . scaffold1715 TRF Tandem_Repeat 127764 127804 75 + . . scaffold1715 GLEAN promoter 138836 139835 0.729615 + . ID=CGI_10019664; scaffold1715 GLEAN mRNA 139836 164060 0.729615 + . ID=CGI_10019664; scaffold1715 GLEAN mRNA 142174 149057 1 - . ID=CGI_10019665; scaffold1715 GLEAN promoter 149058 150057 1 - . ID=CGI_10019665; scaffold1715 TRF Tandem_Repeat 153473 153512 80 + . . scaffold1715 TRF Tandem_Repeat 157894 158639 786 + . . scaffold1715 GLEAN mRNA 166584 196230 0.579396 - . ID=CGI_10019666; scaffold1715 TRF Tandem_Repeat 181776 181888 93 + . . scaffold1715 GLEAN promoter 196231 197230 0.579396 - . ID=CGI_10019666; scaffold1715 GLEAN promoter 197774 198773 0.999605 + . ID=CGI_10019667; scaffold1715 GLEAN mRNA 198774 208570 0.999605 + . ID=CGI_10019667; scaffold1715 GLEAN mRNA 225531 241334 0.994671 - . ID=CGI_10019668; scaffold1715 GLEAN promoter 241335 242334 0.994671 - . ID=CGI_10019668; scaffold1715 GLEAN mRNA 241582 245970 0.997006 - . ID=CGI_10019669; scaffold1715 TRF Tandem_Repeat 243095 243138 88 + . . scaffold1715 GLEAN promoter 245971 246970 0.997006 - . ID=CGI_10019669; scaffold1715 TRF Tandem_Repeat 247030 247072 86 + . . scaffold1715 GLEAN promoter 254532 255531 0.976779 + . ID=CGI_10019670; scaffold1715 GLEAN mRNA 255532 280109 0.976779 + . ID=CGI_10019670; scaffold1715 TRF Tandem_Repeat 270609 273250 3437 + . . scaffold1715 TRF Tandem_Repeat 270609 272525 2678 + . . scaffold1715 TRF Tandem_Repeat 272535 273251 910 + . . scaffold1715 TRF Tandem_Repeat 280295 280323 58 + . . scaffold1715 TRF Tandem_Repeat 280662 280693 64 + . . scaffold1715 TRF Tandem_Repeat 280922 280951 51 + . . scaffold1715 TRF Tandem_Repeat 285203 285250 96 + . . scaffold1715 GLEAN mRNA 288020 294573 0.889634 - . ID=CGI_10019671; scaffold1715 TRF Tandem_Repeat 293961 293994 68 + . . scaffold1715 GLEAN promoter 294574 295573 0.889634 - . ID=CGI_10019671; scaffold1715 TRF Tandem_Repeat 316766 316829 110 + . . scaffold1715 TRF Tandem_Repeat 316766 316835 88 + . . scaffold1715 GLEAN mRNA 318173 340300 0.986612 - . ID=CGI_10019672; scaffold1715 WUBlastX LINE_Penelope 326339 326719 89 + . . scaffold1715 WUBlastX LINE_Penelope 326707 327936 231 + . . scaffold1715 WUBlastX LINE_Penelope 326983 327963 408 + . . scaffold1715 WUBlastX LINE_Penelope 328038 328265 36 + . . scaffold1715 WUBlastX LINE_Penelope 328143 328268 49 + . . scaffold1715 WUBlastX LINE_Penelope 328146 328367 33 + . . scaffold1715 TRF Tandem_Repeat 332350 332401 104 + . . scaffold1715 WUBlastX LTR_Gypsy 333198 333254 45 + . . scaffold1715 WUBlastX LTR_Gypsy 333262 333372 42 + . . scaffold1715 WUBlastX LTR_Gypsy 333434 333649 20 + . . scaffold1715 WUBlastX LTR_Gypsy 333528 333641 29 + . . scaffold1715 WUBlastX LINE_L1-Tx1 334024 334230 22 - . . scaffold1715 WUBlastX LINE_CR1 337542 337790 28 - . . scaffold1715 WUBlastX LINE_RTE-X 337575 337763 36 - . . scaffold1715 WUBlastX LINE_RTE-X 337611 337775 43 - . . scaffold1715 WUBlastX LINE_CR1-L2 337784 337867 25 - . . scaffold1715 WUBlastX LINE_RTE-X 337885 338025 21 - . . scaffold1715 WUBlastX LINE_RTE-X 337939 338250 53 - . . scaffold1715 WUBlastX LINE_Jockey 338282 338452 45 - . . scaffold1715 GLEAN promoter 340301 341300 0.986612 - . ID=CGI_10019672; scaffold1715 TRF Tandem_Repeat 342936 342975 64 + . . scaffold1715 TRF Tandem_Repeat 342977 343057 162 + . . scaffold1715 TRF Tandem_Repeat 344900 344931 64 + . . scaffold1715 TRF Tandem_Repeat 353445 354135 786 + . . scaffold1715 GLEAN mRNA 354777 364040 0.588766 - . ID=CGI_10019673; scaffold1715 WUBlastX LINE_L2 357291 357569 128 - . . scaffold1715 GLEAN promoter 364041 365040 0.588766 - . ID=CGI_10019673; scaffold1715 WUBlastX LINE_L1-Tx1 379271 379858 71 - . . scaffold1715 WUBlastX LINE_L1-Tx1 379691 379861 80 - . . scaffold1715 WUBlastX LINE_L1 379869 380168 89 - . . scaffold1715 WUBlastX LINE_L1-Tx1 380070 380186 31 - . . scaffold1715 WUBlastX LINE_L1 380785 380874 22 - . . scaffold1715 TRF Tandem_Repeat 381128 381455 342 + . . scaffold1715 TRF Tandem_Repeat 381128 381446 294 + . . scaffold1715 TRF Tandem_Repeat 381130 381455 422 + . . scaffold1715 TRF Tandem_Repeat 382198 382862 760 + . . scaffold1715 TRF Tandem_Repeat 382199 382861 642 + . . scaffold1715 TRF Tandem_Repeat 382203 382861 607 + . . scaffold1715 TRF Tandem_Repeat 391900 391943 88 + . . scaffold1715 TRF Tandem_Repeat 400145 400213 102 + . . scaffold1715 GLEAN promoter 404647 405646 0.691889 + . ID=CGI_10019674; scaffold1715 GLEAN mRNA 405647 423871 0.691889 + . ID=CGI_10019674; scaffold1715 TRF Tandem_Repeat 406803 406937 198 + . . scaffold1715 TRF Tandem_Repeat 413065 413120 112 + . . scaffold1715 TRF Tandem_Repeat 417847 418214 594 + . . scaffold1715 WUBlastX DNA_Kolobok-IS4 424436 425509 145 + . . scaffold1715 WUBlastX DNA_IS4EU 424634 425518 219 + . . scaffold1715 WUBlastX DNA_IS4EU 425909 426592 413 - . . scaffold1715 WUBlastX DNA_IS4EU 425912 426751 348 - . . scaffold1715 GLEAN mRNA 426914 428141 0.999981 - . ID=CGI_10019675; scaffold1715 WUBlastX DNA_IS4EU 427782 428126 61 - . . scaffold1715 WUBlastX DNA_IS4EU 427905 428045 61 - . . scaffold1715 GLEAN promoter 428142 429141 0.999981 - . ID=CGI_10019675; scaffold1715 GLEAN promoter 428651 429650 0.999994 + . ID=CGI_10019676; scaffold1715 WUBlastX LINE_L2 429453 430019 158 + . . scaffold1715 GLEAN mRNA 429651 430214 0.999994 + . ID=CGI_10019676; scaffold1715 WUBlastX DNA_hAT-Ac 435094 435540 48 - . . scaffold1715 WUBlastX DNA_hAT-Ac 435163 435522 212 - . . scaffold1715 WUBlastX DNA_hAT-Ac 435352 436290 187 - . . scaffold1715 WUBlastX DNA_hAT-Ac 435814 436290 194 - . . scaffold1715 GLEAN promoter 436558 437557 1 + . ID=CGI_10019677; scaffold1715 GLEAN mRNA 437558 440031 1 + . ID=CGI_10019677; scaffold1715 GLEAN promoter 439859 440858 0.998814 + . ID=CGI_10019678; scaffold1715 GLEAN mRNA 440859 458026 0.998814 + . ID=CGI_10019678; scaffold1715 WUBlastX LTR_Gypsy-Cigr 444521 445141 326 + . . scaffold1715 WUBlastX DNA_IS4EU 455052 455708 320 + . . scaffold1715 GLEAN mRNA 458341 458571 0.618241 - . ID=CGI_10019679; scaffold1715 GLEAN promoter 458572 459571 0.618241 - . ID=CGI_10019679; scaffold1715 WUBlastX DNA_PiggyBac 458620 459192 88 + . . scaffold1715 WUBlastX DNA_PiggyBac 458659 459489 85 + . . scaffold1715 WUBlastX DNA_PiggyBac 458677 459069 107 + . . scaffold1715 GLEAN mRNA 463713 464072 0.99278 - . ID=CGI_10019680; scaffold1715 GLEAN promoter 464073 465072 0.99278 - . ID=CGI_10019680; scaffold1715 TRF Tandem_Repeat 465262 465305 70 + . . scaffold1715 WUBlastX DNA_hAT-Tip100 469011 471005 975 - . . scaffold1715 TRF Tandem_Repeat 471311 471377 70 + . . scaffold1715 TRF Tandem_Repeat 473281 473307 54 + . . scaffold1715 GLEAN promoter 473771 474770 0.851909 + . ID=CGI_10019681; scaffold1715 GLEAN mRNA 474771 495407 0.851909 + . ID=CGI_10019681; scaffold1715 TRF Tandem_Repeat 489356 489406 102 + . . scaffold1715 TRF Tandem_Repeat 491232 491285 67 + . . scaffold1715 TRF Tandem_Repeat 496651 496700 100 + . . scaffold1715 TRF Tandem_Repeat 513691 514104 413 + . . scaffold1715 GLEAN promoter 525028 526027 1 + . ID=CGI_10019682; scaffold1715 GLEAN mRNA 526028 528080 1 + . ID=CGI_10019682; scaffold1715 GLEAN mRNA 529264 531412 1 - . ID=CGI_10019683; scaffold1715 GLEAN promoter 531413 532412 1 - . ID=CGI_10019683; scaffold1715 TRF Tandem_Repeat 531492 531524 57 + . . scaffold1715 GLEAN mRNA 531682 540002 0.330232 - . ID=CGI_10019684; scaffold1715 TRF Tandem_Repeat 533550 533584 70 + . . scaffold1715 TRF Tandem_Repeat 535586 535625 80 + . . scaffold1715 TRF Tandem_Repeat 538620 538644 50 + . . scaffold1715 GLEAN promoter 540003 541002 0.330232 - . ID=CGI_10019684; scaffold1715 GLEAN mRNA 540033 545559 0.999676 - . ID=CGI_10019685; scaffold1715 GLEAN promoter 545560 546559 0.999676 - . ID=CGI_10019685; scaffold1715 GLEAN promoter 549177 550176 0.407691 + . ID=CGI_10019686; scaffold1715 GLEAN mRNA 550177 572188 0.407691 + . ID=CGI_10019686; scaffold1715 TRF Tandem_Repeat 558345 558393 98 + . . scaffold1715 WUBlastX LINE_CR1-L2 567670 567921 27 + . . scaffold1715 WUBlastX LINE_L2 568635 569243 61 + . . scaffold1715 WUBlastX LINE_CR1-L2 568809 569267 245 + . . scaffold1715 WUBlastX LINE_CR1-L2 570372 570647 128 + . . scaffold1715 WUBlastX LINE_L2 570432 570659 130 + . . scaffold1715 WUBlastX LINE_CR1-L2 570659 570967 145 + . . scaffold1715 WUBlastX LINE_L2 570984 571172 53 + . . scaffold1715 GLEAN promoter 572489 573488 0.939549 + . ID=CGI_10019687; scaffold1715 GLEAN mRNA 573489 582159 0.939549 + . ID=CGI_10019687; scaffold1715 TRF Tandem_Repeat 577900 577942 86 + . . scaffold1715 WUBlastX LINE_L2 582484 583062 97 + . . scaffold1715 WUBlastX LINE_RTE-BovB 582583 583917 1115 + . . scaffold1715 GLEAN mRNA 587194 589159 0.999673 - . ID=CGI_10019688; scaffold1715 GLEAN promoter 588943 589942 0.612358 + . ID=CGI_10019689; scaffold1715 GLEAN promoter 589160 590159 0.999673 - . ID=CGI_10019688; scaffold1715 GLEAN mRNA 589943 592435 0.612358 + . ID=CGI_10019689; scaffold1715 TRF Tandem_Repeat 591187 592159 1210 + . . scaffold1715 TRF Tandem_Repeat 592965 592990 52 + . . scaffold1715 TRF Tandem_Repeat 593721 593800 142 + . . scaffold1715 WUBlastX DNA_Zator 604053 604364 113 - . . scaffold1715 WUBlastX DNA_Zator 604540 604725 33 - . . scaffold1715 WUBlastX DNA_Zator 604805 605035 82 - . . scaffold1715 WUBlastX DNA_Zator 604847 605071 29 - . . scaffold1715 WUBlastX DNA_Zator 605687 606163 43 - . . scaffold1715 TRF Tandem_Repeat 609768 609806 60 + . . scaffold1715 TRF Tandem_Repeat 610420 610468 71 + . . scaffold1716 WUBlastX LINE_RTE-X 6057 6452 70 + . . scaffold1716 WUBlastX LINE_RTE-X 6057 6335 96 + . . scaffold1716 GLEAN mRNA 7189 8067 0.463629 - . ID=CGI_10001543; scaffold1716 GLEAN promoter 8068 9067 0.463629 - . ID=CGI_10001543; scaffold1716 TRF Tandem_Repeat 18135 18178 52 + . . scaffold1716 TRF Tandem_Repeat 18349 19151 848 + . . scaffold1716 TRF Tandem_Repeat 24012 24046 61 + . . scaffold1717 TRF Tandem_Repeat 93 132 53 + . . scaffold1717 TRF Tandem_Repeat 12946 12974 58 + . . scaffold1717 TRF Tandem_Repeat 30567 30600 68 + . . scaffold1717 GLEAN promoter 32205 33204 0.558386 + . ID=CGI_10013390; scaffold1717 GLEAN mRNA 33205 46915 0.558386 + . ID=CGI_10013390; scaffold1717 TRF Tandem_Repeat 33436 33519 168 + . . scaffold1717 WUBlastX LINE_L2 41582 41917 26 - . . scaffold1717 WUBlastX LINE_CR1-L2 41925 43031 254 - . . scaffold1717 WUBlastX LINE_CR1 41925 43280 75 - . . scaffold1717 TRF Tandem_Repeat 44375 46484 2023 + . . scaffold1717 TRF Tandem_Repeat 44375 46484 1832 + . . scaffold1717 TRF Tandem_Repeat 44393 45700 324 + . . scaffold1717 TRF Tandem_Repeat 55051 55114 112 + . . scaffold1717 TRF Tandem_Repeat 55596 55665 140 + . . scaffold1717 GLEAN promoter 57116 58115 0.980383 + . ID=CGI_10013391; scaffold1717 GLEAN mRNA 58116 75262 0.980383 + . ID=CGI_10013391; scaffold1717 TRF Tandem_Repeat 59207 59251 90 + . . scaffold1717 WUBlastX LINE_CR1-L2 64609 65064 55 + . . scaffold1717 WUBlastX LINE_L2 64699 65376 74 + . . scaffold1717 TRF Tandem_Repeat 79421 79469 62 + . . scaffold1717 TRF Tandem_Repeat 80401 80440 80 + . . scaffold1717 GLEAN promoter 83856 84855 1 + . ID=CGI_10013392; scaffold1717 GLEAN mRNA 84856 92912 1 + . ID=CGI_10013392; scaffold1717 GLEAN mRNA 96290 107438 1 - . ID=CGI_10013393; scaffold1717 WUBlastX DNA_hAT 96293 96988 123 - . . scaffold1717 TRF Tandem_Repeat 100646 100757 73 + . . scaffold1717 TRF Tandem_Repeat 102933 102962 60 + . . scaffold1717 WUBlastX DNA_hAT 103115 103294 87 - . . scaffold1717 TRF Tandem_Repeat 105680 105790 75 + . . scaffold1717 WUBlastX DNA_hAT 106059 106310 106 - . . scaffold1717 WUBlastX DNA_hAT 107160 107651 122 - . . scaffold1717 GLEAN promoter 107439 108438 1 - . ID=CGI_10013393; scaffold1717 GLEAN mRNA 110016 127567 0.999902 - . ID=CGI_10013394; scaffold1717 TRF Tandem_Repeat 111463 111497 70 + . . scaffold1717 TRF Tandem_Repeat 114370 114502 169 + . . scaffold1717 TRF Tandem_Repeat 116768 116829 108 + . . scaffold1717 TRF Tandem_Repeat 118754 118799 92 + . . scaffold1717 TRF Tandem_Repeat 125235 125277 86 + . . scaffold1717 GLEAN promoter 126964 127963 1 + . ID=CGI_10013395; scaffold1717 GLEAN promoter 127568 128567 0.999902 - . ID=CGI_10013394; scaffold1717 GLEAN mRNA 127964 136033 1 + . ID=CGI_10013395; scaffold1717 TRF Tandem_Repeat 132061 133017 1309 + . . scaffold1717 GLEAN promoter 137742 138741 0.999674 + . ID=CGI_10013396; scaffold1717 TRF Tandem_Repeat 137937 137984 60 + . . scaffold1717 GLEAN mRNA 138742 147316 0.999674 + . ID=CGI_10013396; scaffold1717 TRF Tandem_Repeat 146852 146943 147 + . . scaffold1717 TRF Tandem_Repeat 147513 147548 72 + . . scaffold1717 TRF Tandem_Repeat 148545 148582 76 + . . scaffold1717 GLEAN mRNA 151964 157175 0.999415 - . ID=CGI_10013397; scaffold1717 GLEAN promoter 157176 158175 0.999415 - . ID=CGI_10013397; scaffold1717 WUBlastX LINE_L2 159365 159628 78 + . . scaffold1717 WUBlastX LINE_L2 160215 160529 80 - . . scaffold1717 TRF Tandem_Repeat 163436 163475 53 + . . scaffold1717 TRF Tandem_Repeat 163439 163475 65 + . . scaffold1717 GLEAN mRNA 168771 219478 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 179314 180025 862 + . . scaffold1717 TRF Tandem_Repeat 179314 180025 1057 + . . scaffold1717 TRF Tandem_Repeat 179314 180025 1041 + . . scaffold1717 TRF Tandem_Repeat 185259 185304 92 + . . scaffold1717 TRF Tandem_Repeat 185823 185847 50 + . . scaffold1717 TRF Tandem_Repeat 185881 185908 56 + . . scaffold1717 TRF Tandem_Repeat 205608 205633 52 + . . scaffold1717 GLEAN promoter 213876 214875 0.493086 + . ID=CGI_10013399; scaffold1717 GLEAN mRNA 214876 236300 0.493086 + . ID=CGI_10013399; scaffold1717 GLEAN promoter 219479 220478 0.790125 - . ID=CGI_10013398; scaffold1717 TRF Tandem_Repeat 221055 221102 96 + . . scaffold1717 TRF Tandem_Repeat 226622 226762 138 + . . scaffold1717 GLEAN mRNA 240971 246010 0.889819 - . ID=CGI_10013400; scaffold1717 GLEAN promoter 246011 247010 0.889819 - . ID=CGI_10013400; scaffold1717 TRF Tandem_Repeat 247030 247070 82 + . . scaffold1717 TRF Tandem_Repeat 255123 255151 58 + . . scaffold1717 TRF Tandem_Repeat 258620 258674 103 + . . scaffold1717 TRF Tandem_Repeat 260437 260483 94 + . . scaffold1717 GLEAN mRNA 273940 274665 0.836238 - . ID=CGI_10013401; scaffold1717 GLEAN promoter 274666 275665 0.836238 - . ID=CGI_10013401; scaffold1717 GLEAN promoter 280314 281313 1 + . ID=CGI_10013402; scaffold1717 GLEAN mRNA 281314 283987 1 + . ID=CGI_10013402; scaffold1717 TRF Tandem_Repeat 293148 293393 258 + . . scaffold1717 TRF Tandem_Repeat 293196 293632 523 + . . scaffold1717 TRF Tandem_Repeat 293622 293870 112 + . . scaffold1717 WUBlastX LINE_RTE-X 313175 313621 285 - . . scaffold1717 WUBlastX LINE_RTE-X 313626 314117 184 - . . scaffold1717 WUBlastX LINE_RTE-X 313626 314300 164 - . . scaffold1717 WUBlastX LINE_RTE-X 313629 314009 223 - . . scaffold1717 WUBlastX LINE_L2 316986 317060 21 + . . scaffold1717 WUBlastX LINE_CR1-L2 317062 317370 58 + . . scaffold1717 TRF Tandem_Repeat 331723 331789 89 + . . scaffold1717 TRF Tandem_Repeat 337310 337376 89 + . . scaffold1717 GLEAN mRNA 340986 342620 0.999372 - . ID=CGI_10013403; scaffold1717 WUBlastX DNA_hAT-hATw 341673 342332 29 - . . scaffold1717 GLEAN promoter 342621 343620 0.999372 - . ID=CGI_10013403; scaffold1717 WUBlastX LINE_RTE-X 349727 350092 21 - . . scaffold1717 WUBlastX LINE_RTE-X 349847 350014 30 - . . scaffold1717 WUBlastX LINE_RTE-X 349895 350026 48 - . . scaffold1717 WUBlastX LINE_RTE-X 350270 350437 55 - . . scaffold1717 WUBlastX LINE_RTE-X 350300 350470 57 - . . scaffold1717 WUBlastX LINE_RTE-X 350315 350533 27 - . . scaffold1717 WUBlastX LINE_RTE-X 350536 350853 197 - . . scaffold1717 WUBlastX LINE_RTE-X 350850 351440 265 - . . scaffold1717 WUBlastX LINE_RTE-X 350952 351548 190 - . . scaffold1717 WUBlastX LINE_CR1 351477 351590 21 - . . scaffold1718 TRF Tandem_Repeat 6606 6791 291 + . . scaffold1718 TRF Tandem_Repeat 9414 9442 58 + . . scaffold1718 TRF Tandem_Repeat 9439 9479 82 + . . scaffold1718 WUBlastX LTR_DIRS 17914 18609 129 + . . scaffold1718 TRF Tandem_Repeat 22973 23011 78 + . . scaffold1718 TRF Tandem_Repeat 26538 26563 52 + . . scaffold1719 WUBlastX LINE_L1-Tx1 8242 8625 25 - . . scaffold1719 WUBlastX LINE_L1-Tx1 8365 8625 31 - . . scaffold1719 WUBlastX LINE_L1-Tx1 8624 9307 86 - . . scaffold1719 WUBlastX LINE_L1-Tx1 9200 9481 27 - . . scaffold1719 TRF Tandem_Repeat 15280 15333 99 + . . scaffold1719 TRF Tandem_Repeat 16054 16142 178 + . . scaffold1719 TRF Tandem_Repeat 16140 16222 105 + . . scaffold1719 WUBlastX DNA_Kolobok 18341 18631 76 - . . scaffold1719 WUBlastX DNA_Kolobok 18398 18631 80 - . . scaffold1719 WUBlastX DNA_Kolobok 19587 19742 26 - . . scaffold1719 TRF Tandem_Repeat 28446 28496 102 + . . scaffold1719 TRF Tandem_Repeat 37197 37281 98 + . . scaffold1719 TRF Tandem_Repeat 37197 37283 106 + . . scaffold1719 TRF Tandem_Repeat 37991 38045 92 + . . scaffold1719 TRF Tandem_Repeat 38031 38128 187 + . . scaffold1719 WUBlastX LTR_DIRS 76894 77163 39 - . . scaffold1719 WUBlastX LTR_DIRS 76945 77154 105 - . . scaffold1719 WUBlastX LTR_DIRS 78078 78305 85 - . . scaffold1719 WUBlastX LTR_DIRS 78123 79268 280 - . . scaffold1719 WUBlastX LTR_DIRS 79115 79450 184 - . . scaffold1719 TRF Tandem_Repeat 88596 88635 80 + . . scaffold1719 GLEAN promoter 89069 90068 0.593391 + . ID=CGI_10014270; scaffold1719 GLEAN mRNA 90069 92246 0.593391 + . ID=CGI_10014270; scaffold1719 TRF Tandem_Repeat 92331 92369 78 + . . scaffold1719 TRF Tandem_Repeat 97317 97376 120 + . . scaffold1719 GLEAN promoter 98135 99134 1 + . ID=CGI_10014271; scaffold1719 GLEAN mRNA 99135 100973 1 + . ID=CGI_10014271; scaffold1719 GLEAN mRNA 104956 114286 0.73542 - . ID=CGI_10014272; scaffold1719 TRF Tandem_Repeat 106199 106383 171 + . . scaffold1719 GLEAN promoter 114287 115286 0.73542 - . ID=CGI_10014272; scaffold1719 GLEAN promoter 114474 115473 1 + . ID=CGI_10014273; scaffold1719 GLEAN mRNA 115474 121429 1 + . ID=CGI_10014273; scaffold1719 TRF Tandem_Repeat 125027 125062 63 + . . scaffold1719 GLEAN mRNA 128248 135571 0.990769 - . ID=CGI_10014274; scaffold1719 TRF Tandem_Repeat 129369 129590 374 + . . scaffold1719 GLEAN promoter 135572 136571 0.990769 - . ID=CGI_10014274; scaffold1719 TRF Tandem_Repeat 135648 135702 110 + . . scaffold1719 GLEAN promoter 136631 137630 1 + . ID=CGI_10014275; scaffold1719 GLEAN mRNA 137631 140880 1 + . ID=CGI_10014275; scaffold1719 GLEAN mRNA 142667 151503 0.999988 - . ID=CGI_10014276; scaffold1719 TRF Tandem_Repeat 150602 150653 104 + . . scaffold1719 GLEAN promoter 151504 152503 0.999988 - . ID=CGI_10014276; scaffold1719 TRF Tandem_Repeat 158171 158210 80 + . . scaffold1719 GLEAN mRNA 159775 164941 1 - . ID=CGI_10014277; scaffold1719 TRF Tandem_Repeat 164300 164334 70 + . . scaffold1719 GLEAN promoter 164942 165941 1 - . ID=CGI_10014277; scaffold1719 GLEAN mRNA 168084 168461 0.999988 - . ID=CGI_10014278; scaffold1719 GLEAN promoter 168462 169461 0.999988 - . ID=CGI_10014278; scaffold1719 GLEAN mRNA 168546 168980 0.836234 - . ID=CGI_10014279; scaffold1719 GLEAN promoter 168981 169980 0.836234 - . ID=CGI_10014279; scaffold1719 GLEAN mRNA 171680 177049 0.996737 - . ID=CGI_10014280; scaffold1719 GLEAN promoter 177050 178049 0.996737 - . ID=CGI_10014280; scaffold1719 GLEAN mRNA 177172 199114 0.99732 - . ID=CGI_10014281; scaffold1719 TRF Tandem_Repeat 178963 179030 136 + . . scaffold1719 TRF Tandem_Repeat 183404 183435 64 + . . scaffold1719 WUBlastX LTR_Gypsy 189838 190485 92 + . . scaffold1719 WUBlastX LTR_Gypsy 189943 190461 169 + . . scaffold1719 WUBlastX LTR_Gypsy 190659 190697 30 + . . scaffold1719 WUBlastX LTR_Ngaro 196546 196887 86 - . . scaffold1719 WUBlastX LTR_Ngaro 196886 197155 81 - . . scaffold1719 WUBlastX LTR_Ngaro 197175 197252 52 - . . scaffold1719 WUBlastX LTR_Ngaro 197178 197282 28 - . . scaffold1719 WUBlastX LTR_Ngaro 197444 197848 120 - . . scaffold1719 WUBlastX LTR_Ngaro 197525 197824 204 - . . scaffold1719 WUBlastX LTR_Ngaro 197845 198120 84 - . . scaffold1719 WUBlastX LTR_Ngaro 198439 198582 38 - . . scaffold1719 WUBlastX LTR_Ngaro 198487 198609 65 - . . scaffold1719 WUBlastX LTR_Ngaro 198627 198857 60 - . . scaffold1719 GLEAN promoter 199115 200114 0.99732 - . ID=CGI_10014281; scaffold1719 GLEAN mRNA 199339 211765 0.921315 - . ID=CGI_10014282; scaffold1719 GLEAN promoter 211766 212765 0.921315 - . ID=CGI_10014282; scaffold1719 TRF Tandem_Repeat 215254 215302 55 + . . scaffold1719 GLEAN mRNA 216829 251434 0.999311 - . ID=CGI_10014283; scaffold1719 TRF Tandem_Repeat 220764 220868 92 + . . scaffold1719 TRF Tandem_Repeat 229085 229205 172 + . . scaffold1719 TRF Tandem_Repeat 232082 232372 421 + . . scaffold1719 TRF Tandem_Repeat 245384 245566 266 + . . scaffold1719 GLEAN promoter 251435 252434 0.999311 - . ID=CGI_10014283; scaffold1719 TRF Tandem_Repeat 256692 256735 88 + . . scaffold1719 TRF Tandem_Repeat 264392 264459 127 + . . scaffold1719 GLEAN promoter 266930 267929 0.593267 + . ID=CGI_10014284; scaffold1719 GLEAN mRNA 267930 277599 0.593267 + . ID=CGI_10014284; scaffold1719 GLEAN promoter 279675 280674 0.648136 + . ID=CGI_10014285; scaffold1719 GLEAN mRNA 280675 293074 0.648136 + . ID=CGI_10014285; scaffold1719 GLEAN mRNA 297152 319693 0.889105 - . ID=CGI_10014286; scaffold1719 TRF Tandem_Repeat 299322 299370 98 + . . scaffold1719 TRF Tandem_Repeat 301128 301163 54 + . . scaffold1719 GLEAN promoter 302640 303639 1 + . ID=CGI_10014287; scaffold1719 GLEAN mRNA 303640 306297 1 + . ID=CGI_10014287; scaffold1719 TRF Tandem_Repeat 309455 309500 92 + . . scaffold1719 TRF Tandem_Repeat 312056 312252 132 + . . scaffold1719 WUBlastX LINE_RTE-X 316221 316313 32 - . . scaffold1719 WUBlastX LINE_RTE-X 316460 316744 28 - . . scaffold1719 WUBlastX LINE_RTE-X 316620 316925 57 - . . scaffold1719 GLEAN promoter 319694 320693 0.889105 - . ID=CGI_10014286; scaffold1719 WUBlastX LTR_Pao 320245 320676 63 + . . scaffold1719 WUBlastX LTR_Pao 321323 321382 20 + . . scaffold1719 GLEAN mRNA 328128 331031 1 - . ID=CGI_10014288; scaffold1719 GLEAN promoter 331032 332031 1 - . ID=CGI_10014288; scaffold1719 WUBlastX LINE_L1 331406 331738 56 + . . scaffold1719 WUBlastX LINE_L1-Tx1 331436 331666 134 + . . scaffold1719 WUBlastX LINE_L1 331469 331705 81 + . . scaffold1719 GLEAN promoter 332150 333149 0.988977 + . ID=CGI_10014289; scaffold1719 GLEAN mRNA 333150 347242 0.988977 + . ID=CGI_10014289; scaffold1719 TRF Tandem_Repeat 338192 338886 821 + . . scaffold1719 TRF Tandem_Repeat 338192 338886 766 + . . scaffold1719 GLEAN promoter 346755 347754 0.93598 + . ID=CGI_10014290; scaffold1719 TRF Tandem_Repeat 347534 347704 182 + . . scaffold1719 GLEAN mRNA 347755 358022 0.93598 + . ID=CGI_10014290; scaffold1719 TRF Tandem_Repeat 350216 350686 385 + . . scaffold1719 TRF Tandem_Repeat 350216 350695 482 + . . scaffold1719 TRF Tandem_Repeat 351908 352111 300 + . . scaffold1719 TRF Tandem_Repeat 353137 353171 54 + . . scaffold1719 TRF Tandem_Repeat 359613 359660 96 + . . scaffold1719 GLEAN mRNA 362377 367695 0.909648 - . ID=CGI_10014291; scaffold1719 GLEAN promoter 367696 368695 0.909648 - . ID=CGI_10014291; scaffold1719 TRF Tandem_Repeat 368535 368751 425 + . . scaffold172 GLEAN mRNA 5002 17897 0.999274 - . ID=CGI_10013508; scaffold172 WUBlastX DNA_Crypton 9327 9908 174 + . . scaffold172 WUBlastX DNA_Crypton 10030 10104 26 + . . scaffold172 WUBlastX DNA_Crypton 10188 10463 59 + . . scaffold172 WUBlastX DNA_Crypton 10194 10568 52 + . . scaffold172 WUBlastX LTR_Gypsy 15657 15980 51 + . . scaffold172 WUBlastX LTR_Gypsy 15798 15950 60 + . . scaffold172 WUBlastX LTR_Gypsy 15822 15950 69 + . . scaffold172 WUBlastX LTR_Gypsy 15846 16010 69 + . . scaffold172 WUBlastX LTR_Gypsy 15846 15950 84 + . . scaffold172 WUBlastX LTR_Gypsy 16010 16171 95 + . . scaffold172 WUBlastX LTR_Gypsy 16016 16297 73 + . . scaffold172 WUBlastX LTR_Gypsy 16309 16446 59 + . . scaffold172 WUBlastX LTR_Gypsy-Cigr 16342 16524 71 + . . scaffold172 WUBlastX LTR_Gypsy 16648 16839 46 + . . scaffold172 WUBlastX LTR_Gypsy-Cigr 16848 17732 174 + . . scaffold172 GLEAN promoter 17898 18897 0.999274 - . ID=CGI_10013508; scaffold172 GLEAN promoter 20948 21947 0.723762 + . ID=CGI_10013509; scaffold172 GLEAN mRNA 21948 37933 0.723762 + . ID=CGI_10013509; scaffold172 TRF Tandem_Repeat 36499 36533 70 + . . scaffold172 TRF Tandem_Repeat 41816 41954 192 + . . scaffold172 WUBlastX LINE_L2 43197 43445 94 - . . scaffold172 WUBlastX LINE_L2 43450 43680 124 - . . scaffold172 WUBlastX LINE_L2 43450 44154 114 - . . scaffold172 WUBlastX LINE_L2 43453 43752 123 - . . scaffold172 WUBlastX LINE_L2 44029 44190 41 - . . scaffold172 WUBlastX LINE_L2 44499 44603 28 - . . scaffold172 GLEAN mRNA 53158 63427 0.999949 - . ID=CGI_10013510; scaffold172 TRF Tandem_Repeat 61379 61408 60 + . . scaffold172 GLEAN promoter 63428 64427 0.999949 - . ID=CGI_10013510; scaffold172 TRF Tandem_Repeat 64123 64162 80 + . . scaffold172 GLEAN promoter 64536 65535 1 + . ID=CGI_10013511; scaffold172 GLEAN mRNA 65536 66081 1 + . ID=CGI_10013511; scaffold172 TRF Tandem_Repeat 68139 68318 315 + . . scaffold172 GLEAN promoter 70279 71278 0.994863 + . ID=CGI_10013512; scaffold172 GLEAN mRNA 71279 76019 0.994863 + . ID=CGI_10013512; scaffold172 TRF Tandem_Repeat 76753 76813 122 + . . scaffold172 GLEAN promoter 77207 78206 0.999999 + . ID=CGI_10013514; scaffold172 GLEAN mRNA 77216 77407 0.618186 - . ID=CGI_10013513; scaffold172 GLEAN promoter 77408 78407 0.618186 - . ID=CGI_10013513; scaffold172 GLEAN mRNA 78207 79163 0.999999 + . ID=CGI_10013514; scaffold172 TRF Tandem_Repeat 83423 85879 3906 + . . scaffold172 TRF Tandem_Repeat 83423 85879 3786 + . . scaffold172 GLEAN mRNA 89801 115698 0.385808 - . ID=CGI_10013515; scaffold172 GLEAN promoter 102848 103847 1 + . ID=CGI_10013516; scaffold172 GLEAN mRNA 103848 110844 1 + . ID=CGI_10013516; scaffold172 TRF Tandem_Repeat 108593 109995 1686 + . . scaffold172 GLEAN promoter 115699 116698 0.385808 - . ID=CGI_10013515; scaffold172 WUBlastX LTR_DIRS 116324 117271 138 + . . scaffold172 WUBlastX LTR_DIRS 117361 119397 1160 + . . scaffold172 WUBlastX LTR_DIRS 119157 120167 633 + . . scaffold172 GLEAN promoter 120044 121043 0.999999 + . ID=CGI_10013517; scaffold172 GLEAN mRNA 121044 127116 0.999999 + . ID=CGI_10013517; scaffold172 TRF Tandem_Repeat 124173 124332 151 + . . scaffold172 GLEAN mRNA 130645 142669 0.999676 - . ID=CGI_10013518; scaffold172 TRF Tandem_Repeat 131087 131114 56 + . . scaffold172 GLEAN promoter 142670 143669 0.999676 - . ID=CGI_10013518; scaffold172 GLEAN promoter 151281 152280 0.999548 + . ID=CGI_10013519; scaffold172 GLEAN mRNA 152281 152769 0.999548 + . ID=CGI_10013519; scaffold172 GLEAN mRNA 158144 174152 0.999669 - . ID=CGI_10013520; scaffold172 GLEAN promoter 161115 162114 0.999996 + . ID=CGI_10013521; scaffold172 GLEAN mRNA 162115 165824 0.999996 + . ID=CGI_10013521; scaffold172 TRF Tandem_Repeat 167735 167776 84 + . . scaffold172 GLEAN promoter 171027 172026 0.544386 + . ID=CGI_10013522; scaffold172 GLEAN mRNA 172027 190586 0.544386 + . ID=CGI_10013522; scaffold172 GLEAN promoter 174153 175152 0.999669 - . ID=CGI_10013520; scaffold172 TRF Tandem_Repeat 174899 174939 52 + . . scaffold172 WUBlastX DNA_TcMar-Marin 180769 181245 77 - . . scaffold172 WUBlastX DNA_TcMar-Marin 180823 181344 70 - . . scaffold172 GLEAN mRNA 182752 197434 0.911249 - . ID=CGI_10013523; scaffold172 TRF Tandem_Repeat 189849 189908 102 + . . scaffold172 GLEAN promoter 197435 198434 0.911249 - . ID=CGI_10013523; scaffold172 GLEAN mRNA 199882 203790 1 - . ID=CGI_10013524; scaffold172 TRF Tandem_Repeat 201622 201665 88 + . . scaffold172 GLEAN promoter 203791 204790 1 - . ID=CGI_10013524; scaffold172 TRF Tandem_Repeat 205129 205209 135 + . . scaffold172 GLEAN mRNA 208792 218084 0.586872 - . ID=CGI_10013525; scaffold172 TRF Tandem_Repeat 212309 213932 2498 + . . scaffold172 GLEAN promoter 218085 219084 0.586872 - . ID=CGI_10013525; scaffold172 GLEAN mRNA 218317 223744 0.393844 - . ID=CGI_10013526; scaffold172 GLEAN promoter 223745 224744 0.393844 - . ID=CGI_10013526; scaffold172 TRF Tandem_Repeat 228948 229048 148 + . . scaffold172 TRF Tandem_Repeat 230107 230258 205 + . . scaffold172 WUBlastX DNA_Maverick 230318 230434 57 + . . scaffold172 WUBlastX DNA_Maverick 234821 235483 194 + . . scaffold172 GLEAN mRNA 241230 247978 0.999642 - . ID=CGI_10013527; scaffold172 GLEAN promoter 247979 248978 0.999642 - . ID=CGI_10013527; scaffold172 TRF Tandem_Repeat 248663 248800 136 + . . scaffold172 TRF Tandem_Repeat 249016 249132 94 + . . scaffold172 TRF Tandem_Repeat 249330 249466 87 + . . scaffold172 TRF Tandem_Repeat 249518 249644 112 + . . scaffold172 TRF Tandem_Repeat 249736 249829 84 + . . scaffold172 WUBlastX DNA_Maverick 260780 260935 37 + . . scaffold172 TRF Tandem_Repeat 260968 260994 54 + . . scaffold172 WUBlastX DNA_Maverick 262026 262286 88 + . . scaffold172 WUBlastX LTR_DIRS 262718 263443 179 + . . scaffold172 WUBlastX LTR_DIRS 263505 264347 377 + . . scaffold172 TRF Tandem_Repeat 265786 265822 74 + . . scaffold172 WUBlastX DNA_TcMar-Tc1 266928 267080 36 + . . scaffold172 WUBlastX DNA_TcMar-Tc1 267983 268843 330 + . . scaffold172 WUBlastX DNA_TcMar-Tc1 268667 268897 120 + . . scaffold172 WUBlastX DNA_TcMar-Tc1 268809 268913 70 + . . scaffold172 GLEAN mRNA 274118 285723 0.998306 - . ID=CGI_10013528; scaffold172 WUBlastX LTR_Ngaro 278180 278356 118 - . . scaffold172 WUBlastX LTR_Ngaro 278293 278829 108 - . . scaffold172 WUBlastX LTR_Ngaro 278846 279136 34 - . . scaffold172 WUBlastX LTR_Ngaro 279067 279492 204 - . . scaffold172 WUBlastX LTR_Ngaro 279507 279881 212 - . . scaffold172 GLEAN promoter 285724 286723 0.998306 - . ID=CGI_10013528; scaffold172 GLEAN mRNA 306570 310238 0.999675 - . ID=CGI_10013529; scaffold172 GLEAN promoter 310239 311238 0.999675 - . ID=CGI_10013529; scaffold172 TRF Tandem_Repeat 311319 312001 986 + . . scaffold172 TRF Tandem_Repeat 312009 312062 81 + . . scaffold172 TRF Tandem_Repeat 312017 312055 51 + . . scaffold172 GLEAN mRNA 324124 328995 0.999979 - . ID=CGI_10013530; scaffold172 GLEAN promoter 328996 329995 0.999979 - . ID=CGI_10013530; scaffold172 GLEAN mRNA 329114 333663 0.887396 - . ID=CGI_10013531; scaffold172 TRF Tandem_Repeat 330802 331235 304 + . . scaffold172 TRF Tandem_Repeat 330842 331156 167 + . . scaffold172 TRF Tandem_Repeat 330879 331260 148 + . . scaffold172 TRF Tandem_Repeat 331693 332047 656 + . . scaffold172 GLEAN promoter 333664 334663 0.887396 - . ID=CGI_10013531; scaffold172 GLEAN promoter 354445 355444 0.999999 + . ID=CGI_10013532; scaffold172 GLEAN mRNA 355445 358489 0.999999 + . ID=CGI_10013532; scaffold1720 GLEAN promoter 790 1789 1 + . ID=CGI_10011934; scaffold1720 GLEAN mRNA 1790 6746 1 + . ID=CGI_10011934; scaffold1720 GLEAN promoter 13894 14893 0.918953 + . ID=CGI_10011935; scaffold1720 GLEAN mRNA 14894 15091 0.918953 + . ID=CGI_10011935; scaffold1720 GLEAN promoter 15937 16936 0.918949 + . ID=CGI_10011936; scaffold1720 GLEAN mRNA 16937 18037 0.918949 + . ID=CGI_10011936; scaffold1720 GLEAN mRNA 18179 28990 0.63257 - . ID=CGI_10011937; scaffold1720 TRF Tandem_Repeat 27056 27087 55 + . . scaffold1720 TRF Tandem_Repeat 27121 27175 58 + . . scaffold1720 GLEAN promoter 28991 29990 0.63257 - . ID=CGI_10011937; scaffold1720 GLEAN mRNA 30339 40104 1 - . ID=CGI_10011938; scaffold1720 TRF Tandem_Repeat 34137 34168 55 + . . scaffold1720 GLEAN promoter 40105 41104 1 - . ID=CGI_10011938; scaffold1720 GLEAN promoter 42618 43617 0.999954 + . ID=CGI_10011939; scaffold1720 GLEAN mRNA 43618 48046 0.999954 + . ID=CGI_10011939; scaffold1720 GLEAN mRNA 48479 53506 1 - . ID=CGI_10011940; scaffold1720 TRF Tandem_Repeat 50843 50871 58 + . . scaffold1720 GLEAN promoter 53507 54506 1 - . ID=CGI_10011940; scaffold1720 GLEAN mRNA 54619 61069 0.999848 - . ID=CGI_10011941; scaffold1720 GLEAN promoter 61070 62069 0.999848 - . ID=CGI_10011941; scaffold1720 GLEAN mRNA 62148 73651 0.274986 - . ID=CGI_10011942; scaffold1720 GLEAN promoter 73652 74651 0.274986 - . ID=CGI_10011942; scaffold1720 TRF Tandem_Repeat 91012 91041 51 + . . scaffold1720 TRF Tandem_Repeat 101229 101300 144 + . . scaffold1720 GLEAN promoter 103554 104553 1 + . ID=CGI_10011943; scaffold1720 GLEAN mRNA 104554 112431 1 + . ID=CGI_10011943; scaffold1720 TRF Tandem_Repeat 107638 107671 68 + . . scaffold1720 TRF Tandem_Repeat 109816 109857 84 + . . scaffold1720 GLEAN mRNA 115089 118517 0.999954 - . ID=CGI_10011944; scaffold1720 GLEAN promoter 118518 119517 0.999954 - . ID=CGI_10011944; scaffold1720 TRF Tandem_Repeat 124065 124098 50 + . . scaffold1720 WUBlastX LINE_L1-Tx1 137925 138071 48 + . . scaffold1720 WUBlastX LINE_L1-Tx1 138764 139009 27 + . . scaffold1720 GLEAN mRNA 140574 142307 0.828283 - . ID=CGI_10011945; scaffold1720 GLEAN promoter 142308 143307 0.828283 - . ID=CGI_10011945; scaffold1720 GLEAN promoter 150548 151547 0.999932 + . ID=CGI_10011946; scaffold1720 GLEAN mRNA 151548 151892 0.999932 + . ID=CGI_10011946; scaffold1720 GLEAN mRNA 159591 211734 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 159607 159644 76 + . . scaffold1720 TRF Tandem_Repeat 161919 161980 124 + . . scaffold1720 TRF Tandem_Repeat 164999 165046 96 + . . scaffold1720 TRF Tandem_Repeat 175609 175684 152 + . . scaffold1720 TRF Tandem_Repeat 194265 194326 61 + . . scaffold1720 TRF Tandem_Repeat 198705 198825 192 + . . scaffold1720 TRF Tandem_Repeat 210184 210341 253 + . . scaffold1720 GLEAN promoter 211735 212734 0.836499 - . ID=CGI_10011947; scaffold1720 TRF Tandem_Repeat 239025 239117 66 + . . scaffold1720 TRF Tandem_Repeat 240260 242110 2516 + . . scaffold1720 TRF Tandem_Repeat 242272 242321 75 + . . scaffold1720 GLEAN mRNA 243482 250270 0.999242 - . ID=CGI_10011948; scaffold1720 GLEAN promoter 250271 251270 0.999242 - . ID=CGI_10011948; scaffold1720 GLEAN mRNA 256012 264731 0.986437 - . ID=CGI_10011949; scaffold1720 TRF Tandem_Repeat 260751 261561 1231 + . . scaffold1720 GLEAN promoter 264732 265731 0.986437 - . ID=CGI_10011949; scaffold1720 TRF Tandem_Repeat 265113 267868 2083 + . . scaffold1720 GLEAN mRNA 270198 271752 0.999997 - . ID=CGI_10011950; scaffold1720 GLEAN promoter 271753 272752 0.999997 - . ID=CGI_10011950; scaffold1720 GLEAN promoter 272963 273962 1 + . ID=CGI_10011951; scaffold1720 GLEAN mRNA 273963 286125 1 + . ID=CGI_10011951; scaffold1720 TRF Tandem_Repeat 281525 282506 1856 + . . scaffold1720 GLEAN promoter 290335 291334 0.999958 + . ID=CGI_10011952; scaffold1720 GLEAN mRNA 291335 292999 0.999958 + . ID=CGI_10011952; scaffold1720 TRF Tandem_Repeat 296625 296679 110 + . . scaffold1720 TRF Tandem_Repeat 301926 302847 959 + . . scaffold1721 TRF Tandem_Repeat 128 154 54 + . . scaffold1721 WUBlastX DNA_IS4EU 1453 1734 85 + . . scaffold1721 WUBlastX DNA_Kolobok-IS4 1722 2111 77 + . . scaffold1721 WUBlastX DNA_IS4EU 2674 2886 91 - . . scaffold1721 WUBlastX DNA_IS4EU 2905 3045 109 - . . scaffold1721 WUBlastX DNA_IS4EU 3044 3493 235 - . . scaffold1721 WUBlastX DNA_Kolobok-IS4 3655 3876 20 - . . scaffold1721 WUBlastX LINE_RTE-BovB 14605 14676 42 + . . scaffold1721 WUBlastX LINE_RTE-BovB 14682 14780 30 + . . scaffold1721 WUBlastX LINE_RTE-BovB 14697 14852 70 + . . scaffold1721 WUBlastX LINE_RTE-BovB 14816 15079 65 + . . scaffold1721 GLEAN mRNA 16890 17524 1 - . ID=CGI_10003818; scaffold1721 GLEAN promoter 17525 18524 1 - . ID=CGI_10003818; scaffold1721 TRF Tandem_Repeat 17619 17678 120 + . . scaffold1721 GLEAN mRNA 18288 20279 0.544852 - . ID=CGI_10003819; scaffold1721 TRF Tandem_Repeat 18953 19006 81 + . . scaffold1721 GLEAN promoter 20280 21279 0.544852 - . ID=CGI_10003819; scaffold1721 WUBlastX LINE_RTE-X 32541 32765 79 + . . scaffold1721 WUBlastX LINE_RTE-X 32773 32832 41 + . . scaffold1721 GLEAN mRNA 32849 47166 0.975557 - . ID=CGI_10003820; scaffold1721 TRF Tandem_Repeat 40152 40204 106 + . . scaffold1721 GLEAN promoter 47167 48166 0.975557 - . ID=CGI_10003820; scaffold1721 GLEAN promoter 50582 51581 0.999997 + . ID=CGI_10003821; scaffold1721 GLEAN mRNA 51582 62305 0.999997 + . ID=CGI_10003821; scaffold1721 TRF Tandem_Repeat 57717 57747 62 + . . scaffold1721 TRF Tandem_Repeat 78386 78821 604 + . . scaffold1721 TRF Tandem_Repeat 80001 80272 411 + . . scaffold1721 GLEAN mRNA 82011 82370 0.62444 - . ID=CGI_10003822; scaffold1721 GLEAN promoter 82371 83370 0.62444 - . ID=CGI_10003822; scaffold1722 GLEAN mRNA 11939 32243 0.51382 - . ID=CGI_10014865; scaffold1722 TRF Tandem_Repeat 13074 13151 101 + . . scaffold1722 WUBlastX DNA_IS4EU 13178 13942 94 - . . scaffold1722 TRF Tandem_Repeat 16598 16883 188 + . . scaffold1722 TRF Tandem_Repeat 16625 16883 208 + . . scaffold1722 TRF Tandem_Repeat 16625 16883 249 + . . scaffold1722 GLEAN promoter 32244 33243 0.51382 - . ID=CGI_10014865; scaffold1722 GLEAN mRNA 32399 37196 1 - . ID=CGI_10014866; scaffold1722 GLEAN promoter 37197 38196 1 - . ID=CGI_10014866; scaffold1722 GLEAN promoter 40859 41858 0.593383 + . ID=CGI_10014867; scaffold1722 GLEAN mRNA 41859 46262 0.593383 + . ID=CGI_10014867; scaffold1722 TRF Tandem_Repeat 45140 45188 98 + . . scaffold1722 GLEAN mRNA 46381 54325 0.98167 - . ID=CGI_10014868; scaffold1722 GLEAN promoter 54326 55325 0.98167 - . ID=CGI_10014868; scaffold1722 GLEAN promoter 55436 56435 0.999984 + . ID=CGI_10014869; scaffold1722 GLEAN mRNA 56436 57761 0.999984 + . ID=CGI_10014869; scaffold1722 GLEAN promoter 63633 64632 0.999743 + . ID=CGI_10014870; scaffold1722 GLEAN mRNA 64633 65493 0.999743 + . ID=CGI_10014870; scaffold1722 GLEAN mRNA 67949 75382 1 - . ID=CGI_10014871; scaffold1722 GLEAN promoter 75383 76382 1 - . ID=CGI_10014871; scaffold1722 GLEAN promoter 82189 83188 0.401705 + . ID=CGI_10014872; scaffold1722 GLEAN mRNA 83189 106196 0.401705 + . ID=CGI_10014872; scaffold1722 TRF Tandem_Repeat 85342 85390 98 + . . scaffold1722 TRF Tandem_Repeat 85462 85501 80 + . . scaffold1722 TRF Tandem_Repeat 99201 99379 331 + . . scaffold1722 GLEAN mRNA 108073 109850 1 - . ID=CGI_10014873; scaffold1722 GLEAN promoter 109785 110784 0.558395 + . ID=CGI_10014874; scaffold1722 GLEAN promoter 109851 110850 1 - . ID=CGI_10014873; scaffold1722 GLEAN mRNA 110785 118897 0.558395 + . ID=CGI_10014874; scaffold1722 GLEAN mRNA 111167 115218 0.99733 - . ID=CGI_10014875; scaffold1722 WUBlastX LINE_L2 112386 112679 75 + . . scaffold1722 TRF Tandem_Repeat 114492 114528 74 + . . scaffold1722 GLEAN promoter 115219 116218 0.99733 - . ID=CGI_10014875; scaffold1722 GLEAN mRNA 121728 127571 1 - . ID=CGI_10014876; scaffold1722 TRF Tandem_Repeat 122320 122604 520 + . . scaffold1722 TRF Tandem_Repeat 124509 124765 450 + . . scaffold1722 GLEAN promoter 127572 128571 1 - . ID=CGI_10014876; scaffold1722 TRF Tandem_Repeat 128626 128693 127 + . . scaffold1722 TRF Tandem_Repeat 129880 129923 88 + . . scaffold1722 GLEAN mRNA 131221 144868 0.999504 - . ID=CGI_10014877; scaffold1722 GLEAN promoter 144869 145868 0.999504 - . ID=CGI_10014877; scaffold1722 WUBlastX LINE_RTE-X 148531 148653 58 + . . scaffold1722 GLEAN mRNA 162339 167903 1 - . ID=CGI_10014878; scaffold1722 TRF Tandem_Repeat 165416 165472 107 + . . scaffold1722 GLEAN promoter 167904 168903 1 - . ID=CGI_10014878; scaffold1722 TRF Tandem_Repeat 170613 170655 86 + . . scaffold1722 GLEAN mRNA 172626 178309 0.593342 - . ID=CGI_10014879; scaffold1722 GLEAN promoter 178310 179309 0.593342 - . ID=CGI_10014879; scaffold1722 GLEAN mRNA 190670 194649 1 - . ID=CGI_10014880; scaffold1722 GLEAN promoter 194650 195649 1 - . ID=CGI_10014880; scaffold1722 GLEAN mRNA 198637 202419 0.844003 - . ID=CGI_10014881; scaffold1722 GLEAN promoter 202420 203419 0.844003 - . ID=CGI_10014881; scaffold1722 GLEAN promoter 203511 204510 0.836235 + . ID=CGI_10014882; scaffold1722 GLEAN mRNA 204511 205425 0.836235 + . ID=CGI_10014882; scaffold1722 TRF Tandem_Repeat 205605 205648 70 + . . scaffold1722 TRF Tandem_Repeat 205606 205644 60 + . . scaffold1722 GLEAN mRNA 207156 208112 0.999572 - . ID=CGI_10014883; scaffold1722 GLEAN promoter 208113 209112 0.999572 - . ID=CGI_10014883; scaffold1722 TRF Tandem_Repeat 209469 210268 1170 + . . scaffold1722 TRF Tandem_Repeat 210432 210465 50 + . . scaffold1722 TRF Tandem_Repeat 210435 210469 61 + . . scaffold1722 TRF Tandem_Repeat 214089 214147 118 + . . scaffold1722 TRF Tandem_Repeat 216251 216284 68 + . . scaffold1722 TRF Tandem_Repeat 216326 216392 134 + . . scaffold1722 GLEAN promoter 222993 223992 0.985261 + . ID=CGI_10014884; scaffold1722 GLEAN mRNA 223993 225295 0.985261 + . ID=CGI_10014884; scaffold1722 WUBlastX DNA_Harbinger 226063 226218 39 - . . scaffold1722 WUBlastX DNA_Harbinger 226090 226224 45 - . . scaffold1722 WUBlastX DNA_Harbinger 226181 226525 137 - . . scaffold1722 WUBlastX DNA_Harbinger 226256 226609 146 - . . scaffold1722 WUBlastX DNA_TcMar-Tc1 229865 230419 141 + . . scaffold1722 WUBlastX DNA_TcMar-Tc1 230365 230910 155 + . . scaffold1722 WUBlastX DNA_TcMar-Tc1 230479 230910 203 + . . scaffold1722 WUBlastX LINE_RTE-X 235494 235733 45 - . . scaffold1722 GLEAN promoter 239574 240573 0.654722 + . ID=CGI_10014885; scaffold1722 GLEAN mRNA 240574 244074 0.654722 + . ID=CGI_10014885; scaffold1722 TRF Tandem_Repeat 242365 242630 379 + . . scaffold1722 TRF Tandem_Repeat 242365 242630 396 + . . scaffold1722 GLEAN promoter 243436 244435 0.963225 + . ID=CGI_10014886; scaffold1722 GLEAN mRNA 244436 245572 0.963225 + . ID=CGI_10014886; scaffold1722 WUBlastX LINE_R2-Hero 244600 245169 427 - . . scaffold1722 TRF Tandem_Repeat 246969 247103 198 + . . scaffold1722 GLEAN mRNA 253152 261797 0.84036 - . ID=CGI_10014887; scaffold1722 TRF Tandem_Repeat 254847 254911 130 + . . scaffold1722 GLEAN promoter 261798 262797 0.84036 - . ID=CGI_10014887; scaffold1722 WUBlastX DNA_TcMar-Marin 280237 280353 36 + . . scaffold1722 WUBlastX DNA_TcMar-Marin 280353 280973 22 + . . scaffold1722 WUBlastX DNA_TcMar-Marin 280526 281032 30 + . . scaffold1722 WUBlastX DNA_TcMar-Marin 280650 281018 53 + . . scaffold1722 TRF Tandem_Repeat 283488 283549 124 + . . scaffold1722 TRF Tandem_Repeat 285359 285411 63 + . . scaffold1722 TRF Tandem_Repeat 285359 285412 60 + . . scaffold1722 TRF Tandem_Repeat 288850 288901 104 + . . scaffold1722 WUBlastX LINE_RTE-BovB 293537 293692 40 + . . scaffold1722 TRF Tandem_Repeat 294347 295477 582 + . . scaffold1722 TRF Tandem_Repeat 294445 295477 971 + . . scaffold1722 TRF Tandem_Repeat 304702 304776 150 + . . scaffold1722 GLEAN mRNA 308195 316246 0.999949 - . ID=CGI_10014888; scaffold1722 WUBlastX LINE_RTE-X 310245 311006 142 - . . scaffold1722 WUBlastX LINE_RTE-X 310365 311876 561 - . . scaffold1722 GLEAN promoter 316247 317246 0.999949 - . ID=CGI_10014888; scaffold1722 TRF Tandem_Repeat 321147 321237 105 + . . scaffold1722 GLEAN promoter 324966 325965 0.999587 + . ID=CGI_10014890; scaffold1722 GLEAN mRNA 325966 328726 0.999587 + . ID=CGI_10014890; scaffold1722 GLEAN mRNA 332540 334678 0.990747 - . ID=CGI_10014891; scaffold1722 GLEAN promoter 334679 335678 0.990747 - . ID=CGI_10014891; scaffold1722 WUBlastX LTR_Ngaro 345738 345977 98 + . . scaffold1722 WUBlastX LTR_Ngaro 345962 346693 98 + . . scaffold1722 GLEAN promoter 355004 356003 0.999985 + . ID=CGI_10014892; scaffold1722 GLEAN mRNA 356004 359081 0.999985 + . ID=CGI_10014892; scaffold1722 WUBlastX DNA_TcMar-Tc1 361899 362912 390 - . . scaffold1722 TRF Tandem_Repeat 364037 364071 52 + . . scaffold1722 TRF Tandem_Repeat 365645 366543 1208 + . . scaffold1722 WUBlastX DNA_TcMar-Marin 374784 375140 71 + . . scaffold1722 WUBlastX DNA_TcMar-Marin 374817 375110 113 + . . scaffold1722 WUBlastX DNA_TcMar-Marin 375149 375481 256 + . . scaffold1722 GLEAN mRNA 406620 409255 0.650923 - . ID=CGI_10014893; scaffold1722 GLEAN promoter 409256 410255 0.650923 - . ID=CGI_10014893; scaffold1722 TRF Tandem_Repeat 415530 415597 82 + . . scaffold1722 TRF Tandem_Repeat 415530 415601 76 + . . scaffold1723 TRF Tandem_Repeat 2567 3156 899 + . . scaffold1723 TRF Tandem_Repeat 9810 10132 565 + . . scaffold1723 TRF Tandem_Repeat 11001 12239 1825 + . . scaffold1723 TRF Tandem_Repeat 12484 12676 65 + . . scaffold1723 WUBlastX LINE_RTE-X 18229 18417 61 + . . scaffold1723 WUBlastX LINE_RTE-X 18271 18414 77 + . . scaffold1723 WUBlastX LINE_RTE-X 18274 18510 34 + . . scaffold1723 GLEAN promoter 21879 22878 0.998886 + . ID=CGI_10010514; scaffold1723 GLEAN mRNA 22879 39393 0.998886 + . ID=CGI_10010514; scaffold1723 TRF Tandem_Repeat 29521 29586 57 + . . scaffold1723 TRF Tandem_Repeat 31209 31474 523 + . . scaffold1723 GLEAN mRNA 46750 56686 0.386851 - . ID=CGI_10010516; scaffold1723 TRF Tandem_Repeat 49672 50027 302 + . . scaffold1723 TRF Tandem_Repeat 49675 50080 227 + . . scaffold1723 TRF Tandem_Repeat 54003 54151 107 + . . scaffold1723 GLEAN promoter 56687 57686 0.386851 - . ID=CGI_10010516; scaffold1723 TRF Tandem_Repeat 63030 63108 92 + . . scaffold1723 WUBlastX LINE_LOA 64081 64278 23 - . . scaffold1723 WUBlastX LINE_L2 65170 65556 212 - . . scaffold1723 WUBlastX LINE_CR1 65209 65652 101 - . . scaffold1723 WUBlastX LINE_CR1-L2 70507 70794 109 - . . scaffold1723 WUBlastX LINE_L2 70510 70740 143 - . . scaffold1723 WUBlastX LINE_CR1-L2 70803 70880 22 - . . scaffold1723 TRF Tandem_Repeat 82399 82454 75 + . . scaffold1723 TRF Tandem_Repeat 82403 82457 60 + . . scaffold1723 GLEAN promoter 83415 84414 0.428713 + . ID=CGI_10010517; scaffold1723 GLEAN mRNA 84415 85221 0.428713 + . ID=CGI_10010517; scaffold1723 TRF Tandem_Repeat 84874 84905 64 + . . scaffold1723 TRF Tandem_Repeat 85088 85149 124 + . . scaffold1723 TRF Tandem_Repeat 89213 89256 72 + . . scaffold1723 GLEAN promoter 90571 91570 0.997829 + . ID=CGI_10010518; scaffold1723 GLEAN mRNA 91571 103401 0.997829 + . ID=CGI_10010518; scaffold1723 GLEAN mRNA 118398 125458 1 - . ID=CGI_10010519; scaffold1723 GLEAN promoter 125459 126458 1 - . ID=CGI_10010519; scaffold1723 GLEAN promoter 127320 128319 0.999949 + . ID=CGI_10010520; scaffold1723 GLEAN mRNA 128320 131705 0.999949 + . ID=CGI_10010520; scaffold1723 GLEAN mRNA 132489 138390 1 - . ID=CGI_10010521; scaffold1723 GLEAN promoter 138391 139390 1 - . ID=CGI_10010521; scaffold1723 TRF Tandem_Repeat 139076 139497 515 + . . scaffold1723 TRF Tandem_Repeat 139077 139497 477 + . . scaffold1723 WUBlastX LINE_R2-Hero 146022 146171 85 - . . scaffold1723 GLEAN promoter 146271 147270 0.702205 + . ID=CGI_10010522; scaffold1723 GLEAN mRNA 147271 156217 0.702205 + . ID=CGI_10010522; scaffold1723 WUBlastX DNA_TcMar-Tc1 156934 157929 424 - . . scaffold1723 GLEAN promoter 165477 166476 0.8135 + . ID=CGI_10010523; scaffold1723 GLEAN mRNA 166477 184292 0.8135 + . ID=CGI_10010523; scaffold1723 TRF Tandem_Repeat 168711 168757 85 + . . scaffold1723 TRF Tandem_Repeat 177300 177393 75 + . . scaffold1723 TRF Tandem_Repeat 182490 183314 1095 + . . scaffold1723 TRF Tandem_Repeat 182490 183312 1117 + . . scaffold1723 GLEAN mRNA 185520 187655 0.999682 - . ID=CGI_10010524; scaffold1723 GLEAN promoter 187205 188204 0.953124 + . ID=CGI_10010525; scaffold1723 GLEAN promoter 187656 188655 0.999682 - . ID=CGI_10010524; scaffold1723 GLEAN mRNA 188205 193354 0.953124 + . ID=CGI_10010525; scaffold1723 GLEAN mRNA 193514 194814 1 - . ID=CGI_10010526; scaffold1723 GLEAN promoter 194815 195814 1 - . ID=CGI_10010526; scaffold1723 GLEAN promoter 200827 201826 0.325425 + . ID=CGI_10010528; scaffold1723 GLEAN mRNA 201827 210862 0.325425 + . ID=CGI_10010528; scaffold1723 GLEAN promoter 210141 211140 0.226319 + . ID=CGI_10010529; scaffold1723 GLEAN mRNA 211141 224420 0.226319 + . ID=CGI_10010529; scaffold1723 GLEAN mRNA 215563 220850 1 - . ID=CGI_10010530; scaffold1723 GLEAN promoter 220851 221850 1 - . ID=CGI_10010530; scaffold1723 GLEAN promoter 229811 230810 0.71823 + . ID=CGI_10010531; scaffold1723 GLEAN mRNA 230811 241159 0.71823 + . ID=CGI_10010531; scaffold1723 GLEAN mRNA 245672 257556 1 - . ID=CGI_10010532; scaffold1723 TRF Tandem_Repeat 248097 249018 1372 + . . scaffold1723 TRF Tandem_Repeat 248098 249318 796 + . . scaffold1723 TRF Tandem_Repeat 249039 249399 596 + . . scaffold1723 TRF Tandem_Repeat 250190 250539 596 + . . scaffold1723 TRF Tandem_Repeat 252161 252877 1047 + . . scaffold1723 GLEAN promoter 257557 258556 1 - . ID=CGI_10010532; scaffold1723 TRF Tandem_Repeat 258760 258811 104 + . . scaffold1723 TRF Tandem_Repeat 262996 263672 1074 + . . scaffold1725 GLEAN mRNA 628 1188 0.776794 - . ID=CGI_10004727; scaffold1725 GLEAN promoter 1189 2188 0.776794 - . ID=CGI_10004727; scaffold1725 TRF Tandem_Repeat 6791 6850 120 + . . scaffold1725 TRF Tandem_Repeat 7649 7690 75 + . . scaffold1725 WUBlastX LTR_Gypsy 9548 9943 68 + . . scaffold1725 WUBlastX LTR_Gypsy 10083 10322 119 + . . scaffold1725 GLEAN mRNA 33815 37894 0.771905 - . ID=CGI_10004728; scaffold1725 WUBlastX DNA_IS4EU 37415 37843 51 - . . scaffold1725 GLEAN promoter 37895 38894 0.771905 - . ID=CGI_10004728; scaffold1725 TRF Tandem_Repeat 39084 39180 167 + . . scaffold1725 TRF Tandem_Repeat 39269 39295 54 + . . scaffold1725 GLEAN promoter 47290 48289 0.999372 + . ID=CGI_10004729; scaffold1725 GLEAN mRNA 48290 48649 0.999372 + . ID=CGI_10004729; scaffold1725 WUBlastX LTR_Gypsy 48818 49438 71 + . . scaffold1725 WUBlastX LTR_Gypsy 48944 49471 86 + . . scaffold1725 WUBlastX LTR_Gypsy 49817 49900 47 + . . scaffold1725 GLEAN mRNA 49892 50281 0.999275 - . ID=CGI_10004730; scaffold1725 GLEAN promoter 50282 51281 0.999275 - . ID=CGI_10004730; scaffold1725 TRF Tandem_Repeat 50297 50506 395 + . . scaffold1725 WUBlastX LINE_Penelope 60517 60909 36 - . . scaffold1725 WUBlastX LINE_Penelope 60833 61537 72 + . . scaffold1725 WUBlastX LINE_Penelope 60977 61555 114 + . . scaffold1725 TRF Tandem_Repeat 61829 61853 50 + . . scaffold1725 WUBlastX LINE_Penelope 62307 62804 195 - . . scaffold1725 TRF Tandem_Repeat 67132 67177 58 + . . scaffold1725 TRF Tandem_Repeat 76777 76837 50 + . . scaffold1725 TRF Tandem_Repeat 80020 80069 100 + . . scaffold1725 GLEAN promoter 93002 94001 0.879445 + . ID=CGI_10004731; scaffold1725 GLEAN mRNA 94002 108531 0.879445 + . ID=CGI_10004731; scaffold1725 TRF Tandem_Repeat 105456 105575 59 + . . scaffold1725 TRF Tandem_Repeat 107151 107270 75 + . . scaffold1726 GLEAN mRNA 508 7083 1 - . ID=CGI_10015628; scaffold1726 GLEAN promoter 6478 7477 1 + . ID=CGI_10015629; scaffold1726 GLEAN promoter 7084 8083 1 - . ID=CGI_10015628; scaffold1726 GLEAN mRNA 7478 17058 1 + . ID=CGI_10015629; scaffold1726 TRF Tandem_Repeat 17149 17174 52 + . . scaffold1726 TRF Tandem_Repeat 19362 19411 100 + . . scaffold1726 TRF Tandem_Repeat 23179 23257 158 + . . scaffold1726 TRF Tandem_Repeat 25823 25874 104 + . . scaffold1726 TRF Tandem_Repeat 26691 26767 154 + . . scaffold1726 TRF Tandem_Repeat 27012 27066 110 + . . scaffold1726 TRF Tandem_Repeat 27649 27673 50 + . . scaffold1726 TRF Tandem_Repeat 29196 29234 78 + . . scaffold1726 TRF Tandem_Repeat 31846 31884 78 + . . scaffold1726 TRF Tandem_Repeat 32742 32811 140 + . . scaffold1726 GLEAN promoter 35885 36884 0.937814 + . ID=CGI_10015630; scaffold1726 GLEAN mRNA 36885 43345 0.937814 + . ID=CGI_10015630; scaffold1726 TRF Tandem_Repeat 40695 40728 68 + . . scaffold1726 TRF Tandem_Repeat 42252 42309 116 + . . scaffold1726 TRF Tandem_Repeat 46770 47493 583 + . . scaffold1726 TRF Tandem_Repeat 46770 47492 212 + . . scaffold1726 TRF Tandem_Repeat 46770 47493 604 + . . scaffold1726 TRF Tandem_Repeat 46925 47543 287 + . . scaffold1726 TRF Tandem_Repeat 51193 51231 78 + . . scaffold1726 TRF Tandem_Repeat 56666 56724 118 + . . scaffold1726 TRF Tandem_Repeat 58500 58536 74 + . . scaffold1726 TRF Tandem_Repeat 60423 60465 86 + . . scaffold1726 GLEAN promoter 66193 67192 0.990008 + . ID=CGI_10015631; scaffold1726 GLEAN mRNA 67193 74980 0.990008 + . ID=CGI_10015631; scaffold1726 WUBlastX LINE_L1-Tx1 77799 78230 79 - . . scaffold1726 GLEAN promoter 85336 86335 0.998226 + . ID=CGI_10015632; scaffold1726 GLEAN mRNA 86336 95546 0.998226 + . ID=CGI_10015632; scaffold1726 TRF Tandem_Repeat 92058 92457 543 + . . scaffold1726 TRF Tandem_Repeat 93645 93674 60 + . . scaffold1726 GLEAN mRNA 97940 108435 0.877297 - . ID=CGI_10015633; scaffold1726 TRF Tandem_Repeat 100796 100846 54 + . . scaffold1726 TRF Tandem_Repeat 101578 101615 76 + . . scaffold1726 TRF Tandem_Repeat 103131 103184 108 + . . scaffold1726 TRF Tandem_Repeat 105266 105350 170 + . . scaffold1726 TRF Tandem_Repeat 106295 106329 70 + . . scaffold1726 GLEAN promoter 108436 109435 0.877297 - . ID=CGI_10015633; scaffold1726 TRF Tandem_Repeat 111080 111135 103 + . . scaffold1726 TRF Tandem_Repeat 113647 113711 67 + . . scaffold1726 TRF Tandem_Repeat 113816 114025 102 + . . scaffold1726 GLEAN mRNA 116259 126389 0.999612 - . ID=CGI_10015634; scaffold1726 TRF Tandem_Repeat 117040 117084 90 + . . scaffold1726 TRF Tandem_Repeat 122306 122445 105 + . . scaffold1726 GLEAN promoter 126390 127389 0.999612 - . ID=CGI_10015634; scaffold1726 GLEAN promoter 128057 129056 0.873057 + . ID=CGI_10015635; scaffold1726 GLEAN mRNA 129057 155994 0.873057 + . ID=CGI_10015635; scaffold1726 TRF Tandem_Repeat 129820 129857 76 + . . scaffold1726 TRF Tandem_Repeat 145620 145652 57 + . . scaffold1726 TRF Tandem_Repeat 153046 153088 86 + . . scaffold1726 TRF Tandem_Repeat 154506 154549 79 + . . scaffold1726 TRF Tandem_Repeat 156448 156896 379 + . . scaffold1726 TRF Tandem_Repeat 156457 156896 330 + . . scaffold1726 TRF Tandem_Repeat 156457 156896 429 + . . scaffold1726 TRF Tandem_Repeat 157213 159599 2640 + . . scaffold1726 GLEAN promoter 160002 161001 0.998535 + . ID=CGI_10015636; scaffold1726 GLEAN mRNA 161002 182449 0.998535 + . ID=CGI_10015636; scaffold1726 TRF Tandem_Repeat 166265 166826 234 + . . scaffold1726 TRF Tandem_Repeat 166610 166808 143 + . . scaffold1726 TRF Tandem_Repeat 167210 167460 389 + . . scaffold1726 TRF Tandem_Repeat 172096 172150 101 + . . scaffold1726 WUBlastX LINE_RTE-BovB 172768 172944 91 - . . scaffold1726 TRF Tandem_Repeat 180053 180078 52 + . . scaffold1726 TRF Tandem_Repeat 180415 180440 52 + . . scaffold1726 TRF Tandem_Repeat 206892 206932 50 + . . scaffold1726 TRF Tandem_Repeat 212754 212819 132 + . . scaffold1726 WUBlastX DNA_hAT-Tip100 232997 233272 54 - . . scaffold1726 WUBlastX DNA_hAT-Tip100 232997 233227 68 - . . scaffold1726 WUBlastX DNA_hAT-Tip100 232997 233152 95 - . . scaffold1726 WUBlastX LINE_Penelope 234232 234549 53 + . . scaffold1726 WUBlastX LINE_Penelope 234235 234414 65 + . . scaffold1726 TRF Tandem_Repeat 264372 265594 1728 + . . scaffold1726 TRF Tandem_Repeat 267322 267352 62 + . . scaffold1726 TRF Tandem_Repeat 270574 270804 444 + . . scaffold1726 TRF Tandem_Repeat 272388 272427 62 + . . scaffold1726 TRF Tandem_Repeat 273089 273115 54 + . . scaffold1726 TRF Tandem_Repeat 273282 273336 110 + . . scaffold1726 TRF Tandem_Repeat 273675 273734 120 + . . scaffold1726 TRF Tandem_Repeat 273884 273927 63 + . . scaffold1726 TRF Tandem_Repeat 274625 274671 94 + . . scaffold1726 TRF Tandem_Repeat 274821 274873 99 + . . scaffold1726 WUBlastX LINE_RTE-X 278125 279069 139 - . . scaffold1726 WUBlastX LINE_RTE-X 278815 279132 77 - . . scaffold1726 GLEAN mRNA 280850 293294 0.426779 - . ID=CGI_10015637; scaffold1726 TRF Tandem_Repeat 282663 283252 181 + . . scaffold1726 TRF Tandem_Repeat 282681 283241 583 + . . scaffold1726 TRF Tandem_Repeat 282760 283231 304 + . . scaffold1726 TRF Tandem_Repeat 283051 283205 96 + . . scaffold1726 WUBlastX LTR_Gypsy 292401 292889 56 - . . scaffold1726 WUBlastX LTR_Gypsy 292452 292994 52 - . . scaffold1726 GLEAN promoter 293295 294294 0.426779 - . ID=CGI_10015637; scaffold1726 TRF Tandem_Repeat 305486 306783 1393 + . . scaffold1726 GLEAN mRNA 308644 317431 0.879774 - . ID=CGI_10015638; scaffold1726 TRF Tandem_Repeat 315253 315448 286 + . . scaffold1726 TRF Tandem_Repeat 316056 316205 151 + . . scaffold1726 GLEAN promoter 317432 318431 0.879774 - . ID=CGI_10015638; scaffold1726 TRF Tandem_Repeat 318581 319234 727 + . . scaffold1726 TRF Tandem_Repeat 318581 319234 709 + . . scaffold1726 GLEAN mRNA 324472 333266 0.938382 - . ID=CGI_10015639; scaffold1726 TRF Tandem_Repeat 325887 325921 52 + . . scaffold1726 GLEAN promoter 333267 334266 0.938382 - . ID=CGI_10015639; scaffold1726 GLEAN mRNA 335480 341189 1 - . ID=CGI_10015640; scaffold1726 TRF Tandem_Repeat 337140 337809 1205 + . . scaffold1726 GLEAN promoter 341190 342189 1 - . ID=CGI_10015640; scaffold1726 GLEAN mRNA 346832 358042 0.529003 - . ID=CGI_10015641; scaffold1726 WUBlastX LTR_Gypsy 348171 348341 35 - . . scaffold1726 WUBlastX DNA_P 349452 349547 31 - . . scaffold1726 TRF Tandem_Repeat 354042 354203 288 + . . scaffold1726 GLEAN promoter 358043 359042 0.529003 - . ID=CGI_10015641; scaffold1726 TRF Tandem_Repeat 360531 360751 424 + . . scaffold1726 WUBlastX LINE_CR1 361419 361565 74 + . . scaffold1726 WUBlastX LINE_CR1-L2 361562 361789 41 + . . scaffold1726 WUBlastX LINE_L2 361903 362127 79 + . . scaffold1726 WUBlastX LINE_CR1-L2 361912 362208 34 + . . scaffold1726 GLEAN promoter 363443 364442 0.5 + . ID=CGI_10015642; scaffold1726 GLEAN mRNA 364443 367367 0.5 + . ID=CGI_10015642; scaffold1726 GLEAN mRNA 367922 369401 0.999999 - . ID=CGI_10015643; scaffold1726 GLEAN promoter 369135 370134 1 + . ID=CGI_10015644; scaffold1726 GLEAN promoter 369402 370401 0.999999 - . ID=CGI_10015643; scaffold1726 GLEAN mRNA 370135 372226 1 + . ID=CGI_10015644; scaffold1726 TRF Tandem_Repeat 370670 370708 78 + . . scaffold1726 GLEAN mRNA 374583 389536 0.999675 - . ID=CGI_10015645; scaffold1726 GLEAN promoter 389537 390536 0.999675 - . ID=CGI_10015645; scaffold1726 GLEAN mRNA 390981 409903 0.988085 - . ID=CGI_10015646; scaffold1726 GLEAN promoter 399666 400665 0.996819 + . ID=CGI_10015647; scaffold1726 GLEAN mRNA 400666 402378 0.996819 + . ID=CGI_10015647; scaffold1726 GLEAN promoter 409904 410903 0.988085 - . ID=CGI_10015646; scaffold1726 GLEAN promoter 411595 412594 1 + . ID=CGI_10015648; scaffold1726 GLEAN mRNA 412595 420832 1 + . ID=CGI_10015648; scaffold1726 GLEAN mRNA 422606 423689 1 - . ID=CGI_10015649; scaffold1726 GLEAN promoter 423690 424689 1 - . ID=CGI_10015649; scaffold1726 TRF Tandem_Repeat 426501 426584 61 + . . scaffold1726 TRF Tandem_Repeat 426507 426583 58 + . . scaffold1726 GLEAN mRNA 429289 430365 1 - . ID=CGI_10015650; scaffold1726 GLEAN promoter 430366 431365 1 - . ID=CGI_10015650; scaffold1726 TRF Tandem_Repeat 431026 431083 116 + . . scaffold1726 TRF Tandem_Repeat 434739 435703 936 + . . scaffold1727 GLEAN promoter 1441 2440 0.634383 + . ID=CGI_10002670; scaffold1727 GLEAN mRNA 1645 2065 1 - . ID=CGI_10002669; scaffold1727 GLEAN promoter 2066 3065 1 - . ID=CGI_10002669; scaffold1727 GLEAN mRNA 2441 2832 0.634383 + . ID=CGI_10002670; scaffold1727 GLEAN promoter 3392 4391 0.537536 + . ID=CGI_10002671; scaffold1727 GLEAN mRNA 4392 8500 0.537536 + . ID=CGI_10002671; scaffold1727 WUBlastX DNA_NOF 18215 18541 38 + . . scaffold1727 TRF Tandem_Repeat 18816 19803 880 + . . scaffold1727 TRF Tandem_Repeat 18827 19803 1032 + . . scaffold1727 TRF Tandem_Repeat 18827 19803 998 + . . scaffold1727 WUBlastX RC_Helitron 19862 20905 123 + . . scaffold1727 WUBlastX RC_Helitron 20030 22225 756 + . . scaffold1727 WUBlastX RC_Helitron 22227 23408 363 + . . scaffold1727 TRF Tandem_Repeat 25372 27007 1634 + . . scaffold1727 GLEAN promoter 26437 27436 0.635377 + . ID=CGI_10002672; scaffold1727 GLEAN mRNA 27437 43036 0.635377 + . ID=CGI_10002672; scaffold1727 TRF Tandem_Repeat 30639 31884 1772 + . . scaffold1727 TRF Tandem_Repeat 33105 33150 57 + . . scaffold1727 TRF Tandem_Repeat 33108 33149 50 + . . scaffold1727 TRF Tandem_Repeat 35544 35578 52 + . . scaffold1727 TRF Tandem_Repeat 35548 35582 61 + . . scaffold1727 WUBlastX DNA_hAT-hATw 37442 38917 184 + . . scaffold1727 TRF Tandem_Repeat 39088 39141 74 + . . scaffold1727 TRF Tandem_Repeat 40711 40780 52 + . . scaffold1727 WUBlastX RC_Helitron 41698 42663 125 - . . scaffold1727 WUBlastX RC_Helitron 41839 42657 213 - . . scaffold1727 TRF Tandem_Repeat 42720 42770 66 + . . scaffold1727 TRF Tandem_Repeat 51712 51827 88 + . . scaffold1728 GLEAN mRNA 1604 25024 0.9267 - . ID=CGI_10004906; scaffold1728 TRF Tandem_Repeat 5218 5279 63 + . . scaffold1728 TRF Tandem_Repeat 19723 19758 63 + . . scaffold1728 GLEAN promoter 25025 26024 0.9267 - . ID=CGI_10004906; scaffold1728 WUBlastX LINE_L2 27373 28047 51 + . . scaffold1728 WUBlastX LINE_CR1-L2 27496 28257 152 + . . scaffold1728 WUBlastX LINE_L2 27577 28218 331 + . . scaffold1728 WUBlastX LINE_CR1-L2 28561 28884 37 + . . scaffold1728 WUBlastX LINE_L2 28666 28881 52 + . . scaffold1728 TRF Tandem_Repeat 29337 29361 50 + . . scaffold1728 TRF Tandem_Repeat 30117 30264 296 + . . scaffold1728 TRF Tandem_Repeat 31514 31553 55 + . . scaffold1728 GLEAN promoter 32383 33382 0.448772 + . ID=CGI_10004907; scaffold1728 GLEAN mRNA 33383 34897 0.448772 + . ID=CGI_10004907; scaffold1728 GLEAN promoter 40295 41294 0.540301 + . ID=CGI_10004908; scaffold1728 GLEAN mRNA 41295 42501 0.540301 + . ID=CGI_10004908; scaffold1728 WUBlastX DNA_TcMar-Marin 43727 43939 62 + . . scaffold1728 WUBlastX DNA_TcMar-Marin 43727 43849 85 + . . scaffold1728 TRF Tandem_Repeat 58773 58815 59 + . . scaffold1728 TRF Tandem_Repeat 59258 59311 92 + . . scaffold1728 GLEAN promoter 61824 62823 1 + . ID=CGI_10004909; scaffold1728 GLEAN mRNA 62824 66510 1 + . ID=CGI_10004909; scaffold1728 TRF Tandem_Repeat 73610 73971 440 + . . scaffold1728 GLEAN mRNA 75451 80894 0.992855 - . ID=CGI_10004910; scaffold1728 TRF Tandem_Repeat 80422 80448 54 + . . scaffold1728 GLEAN promoter 80895 81894 0.992855 - . ID=CGI_10004910; scaffold1728 GLEAN mRNA 81680 83593 0.999986 - . ID=CGI_10004911; scaffold1728 GLEAN promoter 83594 84593 0.999986 - . ID=CGI_10004911; scaffold1728 TRF Tandem_Repeat 92460 92499 62 + . . scaffold1728 TRF Tandem_Repeat 93790 93890 193 + . . scaffold1728 GLEAN promoter 93923 94922 0.629207 + . ID=CGI_10004912; scaffold1728 TRF Tandem_Repeat 94723 94758 72 + . . scaffold1728 GLEAN mRNA 94923 100316 0.629207 + . ID=CGI_10004912; scaffold1728 TRF Tandem_Repeat 97100 97144 90 + . . scaffold1728 WUBlastX DNA_Harbinger 112388 112507 31 - . . scaffold1728 WUBlastX DNA_Harbinger 112412 112507 41 - . . scaffold1728 WUBlastX DNA_Harbinger 113283 113555 49 - . . scaffold1728 WUBlastX DNA_Harbinger 113289 113498 51 - . . scaffold1729 GLEAN promoter 4390 5389 0.499955 + . ID=CGI_10008482; scaffold1729 GLEAN mRNA 5390 8896 0.499955 + . ID=CGI_10008482; scaffold1729 WUBlastX DNA_Kolobok 16227 16373 29 + . . scaffold1729 WUBlastX DNA_Kolobok 16617 16811 46 + . . scaffold1729 WUBlastX DNA_Kolobok 17167 17313 52 + . . scaffold1729 WUBlastX DNA_Kolobok 17439 17588 101 + . . scaffold1729 WUBlastX LINE_L1-Tx1 21254 21703 66 - . . scaffold1729 WUBlastX LINE_L1-Tx1 21287 21574 82 - . . scaffold1729 WUBlastX LINE_L1-Tx1 22491 22589 25 - . . scaffold1729 WUBlastX LINE_L2 29181 30005 130 + . . scaffold1729 WUBlastX LINE_CR1-L2 29328 29957 267 + . . scaffold1729 WUBlastX LINE_L2 30654 33878 1466 + . . scaffold1729 GLEAN mRNA 39686 49840 0.999048 - . ID=CGI_10008483; scaffold1729 GLEAN promoter 49402 50401 0.999674 + . ID=CGI_10008485; scaffold1729 GLEAN promoter 49841 50840 0.999048 - . ID=CGI_10008483; scaffold1729 GLEAN mRNA 49887 50132 0.998745 - . ID=CGI_10008484; scaffold1729 GLEAN promoter 50133 51132 0.998745 - . ID=CGI_10008484; scaffold1729 GLEAN mRNA 50402 60273 0.999674 + . ID=CGI_10008485; scaffold1729 WUBlastX DNA_En-Spm 53353 55116 334 + . . scaffold1729 WUBlastX DNA_En-Spm 53461 54555 345 + . . scaffold1729 GLEAN mRNA 66672 68399 1 - . ID=CGI_10008486; scaffold1729 GLEAN promoter 68400 69399 1 - . ID=CGI_10008486; scaffold1729 TRF Tandem_Repeat 71829 71898 70 + . . scaffold1729 TRF Tandem_Repeat 71829 71924 77 + . . scaffold1729 TRF Tandem_Repeat 71862 71924 54 + . . scaffold1729 WUBlastX LINE_RTE-X 105006 105434 89 - . . scaffold1729 WUBlastX LTR_Ngaro 105779 105931 76 - . . scaffold1729 TRF Tandem_Repeat 106006 106234 228 + . . scaffold1729 TRF Tandem_Repeat 106036 106234 80 + . . scaffold1729 TRF Tandem_Repeat 107096 107150 110 + . . scaffold1729 TRF Tandem_Repeat 107310 107379 113 + . . scaffold1729 TRF Tandem_Repeat 108310 108336 54 + . . scaffold1729 TRF Tandem_Repeat 110614 110867 94 + . . scaffold1729 TRF Tandem_Repeat 110614 110846 175 + . . scaffold1729 TRF Tandem_Repeat 110614 110847 194 + . . scaffold1729 TRF Tandem_Repeat 110654 110876 152 + . . scaffold1729 TRF Tandem_Repeat 110656 110868 122 + . . scaffold1729 TRF Tandem_Repeat 110761 110876 121 + . . scaffold1729 WUBlastX LINE_RTE-BovB 111879 112694 368 - . . scaffold1729 WUBlastX LINE_R2 112488 112769 102 - . . scaffold1729 WUBlastX LINE_RTE-X 113371 114903 658 + . . scaffold1729 WUBlastX LINE_RTE-X 114920 115294 106 + . . scaffold1729 TRF Tandem_Repeat 116353 116420 136 + . . scaffold1729 TRF Tandem_Repeat 123192 123241 66 + . . scaffold1729 GLEAN promoter 124826 125825 0.481332 + . ID=CGI_10008487; scaffold1729 GLEAN mRNA 125826 131391 0.481332 + . ID=CGI_10008487; scaffold1729 TRF Tandem_Repeat 134431 134476 92 + . . scaffold1729 TRF Tandem_Repeat 134729 134781 106 + . . scaffold1729 GLEAN mRNA 135150 142384 1 - . ID=CGI_10008488; scaffold1729 TRF Tandem_Repeat 136771 136806 72 + . . scaffold1729 TRF Tandem_Repeat 139824 139898 141 + . . scaffold1729 TRF Tandem_Repeat 140542 140594 97 + . . scaffold1729 GLEAN promoter 142385 143384 1 - . ID=CGI_10008488; scaffold1729 TRF Tandem_Repeat 143862 143895 68 + . . scaffold1729 GLEAN mRNA 146948 159763 0.650963 - . ID=CGI_10008489; scaffold1729 GLEAN promoter 153386 154385 0.961106 + . ID=CGI_10008490; scaffold1729 GLEAN mRNA 154386 168154 0.961106 + . ID=CGI_10008490; scaffold1729 TRF Tandem_Repeat 156679 156717 53 + . . scaffold1729 TRF Tandem_Repeat 157883 157935 106 + . . scaffold1729 TRF Tandem_Repeat 159032 159059 56 + . . scaffold1729 GLEAN promoter 159764 160763 0.650963 - . ID=CGI_10008489; scaffold1729 TRF Tandem_Repeat 163036 163061 52 + . . scaffold1729 TRF Tandem_Repeat 169342 169368 54 + . . scaffold1729 GLEAN promoter 172560 173559 0.316447 + . ID=CGI_10008491; scaffold1729 GLEAN mRNA 173560 176933 0.316447 + . ID=CGI_10008491; scaffold1729 TRF Tandem_Repeat 179272 179308 74 + . . scaffold1729 TRF Tandem_Repeat 181646 181770 124 + . . scaffold1729 TRF Tandem_Repeat 181729 181915 175 + . . scaffold1729 TRF Tandem_Repeat 181777 181987 171 + . . scaffold1729 WUBlastX LINE_L1-Tx1 193029 193103 26 - . . scaffold1729 WUBlastX LINE_L1-Tx1 193702 193866 39 - . . scaffold1729 WUBlastX LINE_L1 193720 193839 46 - . . scaffold1729 WUBlastX LINE_L1-Tx1 193823 194617 29 - . . scaffold1729 WUBlastX LINE_L1 194141 194602 50 - . . scaffold1729 WUBlastX LINE_L1 194156 194278 75 - . . scaffold1729 WUBlastX LINE_L1-Tx1 194162 194503 63 - . . scaffold1729 GLEAN promoter 195724 196723 0.822484 + . ID=CGI_10008492; scaffold1729 TRF Tandem_Repeat 196053 196307 289 + . . scaffold1729 GLEAN mRNA 196724 202355 0.822484 + . ID=CGI_10008492; scaffold1729 WUBlastX LTR_Ngaro 197242 197319 26 + . . scaffold1729 WUBlastX LTR_Ngaro 197260 197319 35 + . . scaffold1729 WUBlastX LTR_Ngaro 197998 198885 490 + . . scaffold173 TRF Tandem_Repeat 96 138 50 + . . scaffold173 GLEAN mRNA 2060 4258 0.999764 - . ID=CGI_10008783; scaffold173 GLEAN promoter 3608 4607 1 + . ID=CGI_10008784; scaffold173 GLEAN promoter 4259 5258 0.999764 - . ID=CGI_10008783; scaffold173 GLEAN mRNA 4608 12571 1 + . ID=CGI_10008784; scaffold173 TRF Tandem_Repeat 8181 8225 72 + . . scaffold173 TRF Tandem_Repeat 23047 23071 50 + . . scaffold173 GLEAN promoter 33239 34238 0.999068 + . ID=CGI_10008785; scaffold173 GLEAN mRNA 34239 35783 0.999068 + . ID=CGI_10008785; scaffold173 GLEAN mRNA 36645 41227 1 - . ID=CGI_10008786; scaffold173 GLEAN promoter 41228 42227 1 - . ID=CGI_10008786; scaffold173 WUBlastX LINE_CR1-L2 44105 44251 80 - . . scaffold173 WUBlastX LINE_CR1-L2 44105 44320 75 - . . scaffold173 TRF Tandem_Repeat 45100 45193 188 + . . scaffold173 TRF Tandem_Repeat 47861 48038 257 + . . scaffold173 TRF Tandem_Repeat 49349 49599 279 + . . scaffold173 TRF Tandem_Repeat 49355 49612 250 + . . scaffold173 TRF Tandem_Repeat 52095 52169 125 + . . scaffold173 GLEAN promoter 52899 53898 0.999996 + . ID=CGI_10008787; scaffold173 GLEAN mRNA 53899 54470 0.999996 + . ID=CGI_10008787; scaffold173 GLEAN promoter 54325 55324 1 + . ID=CGI_10008788; scaffold173 GLEAN mRNA 55325 57194 1 + . ID=CGI_10008788; scaffold173 GLEAN mRNA 58788 59867 0.6496 - . ID=CGI_10008789; scaffold173 GLEAN promoter 59868 60867 0.6496 - . ID=CGI_10008789; scaffold173 TRF Tandem_Repeat 66608 66642 54 + . . scaffold173 WUBlastX LTR_Gypsy 81171 81266 22 + . . scaffold173 WUBlastX LTR_Gypsy 81201 83369 585 + . . scaffold173 WUBlastX LTR_Gypsy 82875 83489 231 + . . scaffold173 WUBlastX LTR_Gypsy 83345 83536 21 + . . scaffold173 WUBlastX LTR_Gypsy 83524 84588 757 + . . scaffold173 WUBlastX LTR_Gypsy 83710 84759 328 + . . scaffold173 TRF Tandem_Repeat 86345 86389 90 + . . scaffold173 WUBlastX LTR_Gypsy 88076 88264 118 + . . scaffold173 WUBlastX LTR_Gypsy 88085 88309 73 + . . scaffold173 GLEAN mRNA 95023 95253 0.618241 - . ID=CGI_10008790; scaffold173 GLEAN promoter 95254 96253 0.618241 - . ID=CGI_10008790; scaffold173 GLEAN mRNA 96570 97178 0.988957 - . ID=CGI_10008791; scaffold173 GLEAN promoter 97179 98178 0.988957 - . ID=CGI_10008791; scaffold173 TRF Tandem_Repeat 117928 118019 96 + . . scaffold173 TRF Tandem_Repeat 118097 118256 124 + . . scaffold173 TRF Tandem_Repeat 118297 118388 105 + . . scaffold173 WUBlastX LINE_L1 121606 122358 39 + . . scaffold173 GLEAN promoter 121657 122656 0.291746 + . ID=CGI_10008792; scaffold173 WUBlastX LINE_L2 121810 122478 135 + . . scaffold173 GLEAN mRNA 122657 137245 0.291746 + . ID=CGI_10008792; scaffold173 TRF Tandem_Repeat 128034 128080 67 + . . scaffold173 TRF Tandem_Repeat 135069 135121 106 + . . scaffold173 TRF Tandem_Repeat 140048 140110 60 + . . scaffold173 TRF Tandem_Repeat 140356 140434 149 + . . scaffold173 GLEAN promoter 158540 159539 0.998095 + . ID=CGI_10008793; scaffold173 GLEAN mRNA 159540 175461 0.998095 + . ID=CGI_10008793; scaffold173 TRF Tandem_Repeat 171969 172014 58 + . . scaffold173 GLEAN promoter 181261 182260 0.963766 + . ID=CGI_10008794; scaffold173 GLEAN mRNA 182261 199816 0.963766 + . ID=CGI_10008794; scaffold173 TRF Tandem_Repeat 183830 184032 379 + . . scaffold173 TRF Tandem_Repeat 208728 208762 70 + . . scaffold173 GLEAN promoter 214143 215142 0.889923 + . ID=CGI_10008795; scaffold173 GLEAN mRNA 215143 217603 0.889923 + . ID=CGI_10008795; scaffold173 TRF Tandem_Repeat 217119 217382 354 + . . scaffold1730 GLEAN promoter 6332 7331 0.950383 + . ID=CGI_10012252; scaffold1730 GLEAN mRNA 7332 8755 0.950383 + . ID=CGI_10012252; scaffold1730 TRF Tandem_Repeat 7553 7600 96 + . . scaffold1730 GLEAN promoter 8361 9360 0.999561 + . ID=CGI_10012253; scaffold1730 GLEAN mRNA 9361 10399 0.999561 + . ID=CGI_10012253; scaffold1730 TRF Tandem_Repeat 12172 12208 56 + . . scaffold1730 WUBlastX DNA_Maverick 12283 12798 311 + . . scaffold1730 TRF Tandem_Repeat 14791 14837 94 + . . scaffold1730 TRF Tandem_Repeat 22892 23581 937 + . . scaffold1730 WUBlastX DNA_Harbinger 23731 23910 51 - . . scaffold1730 TRF Tandem_Repeat 27878 27923 92 + . . scaffold1730 WUBlastX DNA_PiggyBac 29350 29523 58 + . . scaffold1730 WUBlastX DNA_PiggyBac 30009 30152 60 + . . scaffold1730 TRF Tandem_Repeat 60748 61128 339 + . . scaffold1730 WUBlastX LINE_L1 69281 69337 20 - . . scaffold1730 WUBlastX LINE_L1 69609 70250 36 - . . scaffold1730 WUBlastX LINE_L1-Tx1 69894 70310 65 - . . scaffold1730 WUBlastX LINE_L1-Tx1 70032 70295 166 - . . scaffold1730 WUBlastX LINE_L1-Tx1 70273 70497 79 - . . scaffold1730 WUBlastX LINE_L1-Tx1 70282 70683 50 - . . scaffold1730 WUBlastX LINE_L1 71520 71612 21 - . . scaffold1730 TRF Tandem_Repeat 71752 71785 50 + . . scaffold1730 WUBlastX LINE_L1-Tx1 72044 72346 29 - . . scaffold1730 WUBlastX LINE_L1-Tx1 72092 72337 44 - . . scaffold1730 WUBlastX LINE_RTE-BovB 72107 72478 43 - . . scaffold1730 WUBlastX LINE_L1-Tx1 72131 72364 74 - . . scaffold1730 WUBlastX LINE_L1 72463 72984 134 - . . scaffold1730 WUBlastX LINE_L1 73016 73420 242 - . . scaffold1730 TRF Tandem_Repeat 75608 75650 68 + . . scaffold1730 TRF Tandem_Repeat 75612 75656 63 + . . scaffold1730 WUBlastX LINE_RTE-X 82692 83975 119 + . . scaffold1730 WUBlastX LINE_RTE-X 82950 83699 229 + . . scaffold1730 WUBlastX LINE_RTE-X 83178 83975 228 + . . scaffold1730 WUBlastX LINE_RTE-X 83193 83744 230 + . . scaffold1730 WUBlastX LINE_RTE-X 84722 84982 61 + . . scaffold1730 WUBlastX LINE_RTE-X 84773 84973 72 + . . scaffold1730 WUBlastX LINE_RTE-X 85003 85200 56 + . . scaffold1730 WUBlastX LINE_RTE-X 85006 85173 59 + . . scaffold1730 WUBlastX LINE_RTE-X 85015 85368 49 + . . scaffold1730 WUBlastX LINE_RTE-X 85376 85726 48 + . . scaffold1730 WUBlastX LINE_RTE-X 85376 85615 64 + . . scaffold1730 WUBlastX LINE_RTE-X 85430 85654 75 + . . scaffold1730 GLEAN mRNA 113542 117424 0.494862 - . ID=CGI_10012254; scaffold1730 WUBlastX DNA_Maverick 115633 115959 64 + . . scaffold1730 WUBlastX DNA_Maverick 115876 116022 23 + . . scaffold1730 GLEAN promoter 117425 118424 0.494862 - . ID=CGI_10012254; scaffold1730 GLEAN mRNA 128597 135866 0.888729 - . ID=CGI_10012255; scaffold1730 WUBlastX DNA_IS4EU 129176 129301 36 - . . scaffold1730 WUBlastX DNA_IS4EU 129544 130173 60 - . . scaffold1730 WUBlastX DNA_Maverick 134056 134436 285 + . . scaffold1730 TRF Tandem_Repeat 135196 135260 98 + . . scaffold1730 TRF Tandem_Repeat 135359 135390 64 + . . scaffold1730 GLEAN promoter 135867 136866 0.888729 - . ID=CGI_10012255; scaffold1730 GLEAN mRNA 136041 138753 0.889102 - . ID=CGI_10012256; scaffold1730 GLEAN promoter 138754 139753 0.889102 - . ID=CGI_10012256; scaffold1730 WUBlastX DNA_TcMar-Fot1 140846 141127 74 - . . scaffold1730 WUBlastX DNA_TcMar-Fot1 140897 141127 87 - . . scaffold1730 WUBlastX DNA_TcMar-Fot1 141269 141460 157 - . . scaffold1730 WUBlastX DNA_TcMar-Fot1 141272 141502 63 - . . scaffold1730 WUBlastX DNA_TcMar-Fot1 141536 141781 134 - . . scaffold1730 WUBlastX DNA_TcMar-Fot1 141575 141772 135 - . . scaffold1730 WUBlastX DNA_TcMar-Fot1 142313 142573 186 - . . scaffold1730 WUBlastX DNA_TcMar-Fot1 142564 142857 109 - . . scaffold1730 WUBlastX DNA_IS4EU 146789 147610 73 + . . scaffold1730 WUBlastX DNA_IS4EU 147068 147580 90 + . . scaffold1730 GLEAN mRNA 153500 174693 0.999676 - . ID=CGI_10012257; scaffold1730 TRF Tandem_Repeat 153771 153822 86 + . . scaffold1730 TRF Tandem_Repeat 155286 155321 72 + . . scaffold1730 TRF Tandem_Repeat 155477 155564 176 + . . scaffold1730 GLEAN promoter 174694 175693 0.999676 - . ID=CGI_10012257; scaffold1730 GLEAN mRNA 175860 176744 0.99996 - . ID=CGI_10012258; scaffold1730 GLEAN promoter 176745 177744 0.99996 - . ID=CGI_10012258; scaffold1730 TRF Tandem_Repeat 183671 183761 53 + . . scaffold1730 GLEAN promoter 187701 188700 0.838125 + . ID=CGI_10012259; scaffold1730 GLEAN mRNA 188701 191966 0.838125 + . ID=CGI_10012259; scaffold1730 GLEAN promoter 194851 195850 0.999676 + . ID=CGI_10012260; scaffold1730 GLEAN mRNA 195851 199333 0.999676 + . ID=CGI_10012260; scaffold1730 WUBlastX LTR_Gypsy 196819 197097 79 + . . scaffold1730 WUBlastX LTR_Gypsy-Cigr 196825 196959 97 + . . scaffold1730 GLEAN mRNA 204701 206125 1 - . ID=CGI_10012261; scaffold1730 GLEAN promoter 206126 207125 1 - . ID=CGI_10012261; scaffold1730 WUBlastX DNA_TcMar-Tc1 210950 211519 110 + . . scaffold1730 WUBlastX DNA_TcMar-Tc1 211507 212022 275 + . . scaffold1730 WUBlastX DNA_TcMar-Tc1 211570 212007 284 + . . scaffold1730 WUBlastX LINE_RTE-X 212444 213406 101 + . . scaffold1730 WUBlastX LINE_L2 212591 213268 220 + . . scaffold1730 WUBlastX LINE_CR1 212696 213772 799 + . . scaffold1730 WUBlastX LINE_CR1-L2 215207 215524 56 + . . scaffold1730 WUBlastX LINE_RTE-X 215345 215524 71 + . . scaffold1730 WUBlastX LINE_RTE-X 215345 215584 71 + . . scaffold1730 WUBlastX LINE_RTE-X 215381 215524 77 + . . scaffold1730 WUBlastX LINE_RTE-X 215405 215524 91 + . . scaffold1730 WUBlastX LINE_RTE-X 215559 215729 57 + . . scaffold1730 WUBlastX LINE_RTE-X 215731 216012 176 + . . scaffold1730 WUBlastX LINE_RTE-X 215752 216132 113 + . . scaffold1730 GLEAN promoter 219607 220606 1 + . ID=CGI_10012262; scaffold1730 GLEAN mRNA 220607 223579 1 + . ID=CGI_10012262; scaffold1730 TRF Tandem_Repeat 225690 225734 72 + . . scaffold1730 TRF Tandem_Repeat 226233 226333 109 + . . scaffold1730 GLEAN promoter 241580 242579 0.989803 + . ID=CGI_10012263; scaffold1730 GLEAN mRNA 242580 243242 0.989803 + . ID=CGI_10012263; scaffold1730 GLEAN promoter 247892 248891 0.5 + . ID=CGI_10012264; scaffold1730 GLEAN mRNA 248892 250265 0.5 + . ID=CGI_10012264; scaffold1730 GLEAN promoter 256711 257710 0.999631 + . ID=CGI_10012265; scaffold1730 GLEAN mRNA 257711 265928 0.999631 + . ID=CGI_10012265; scaffold1730 GLEAN promoter 274361 275360 0.528461 + . ID=CGI_10012266; scaffold1730 GLEAN mRNA 275361 276065 0.528461 + . ID=CGI_10012266; scaffold1730 WUBlastX LINE_R2-Hero 289684 290892 125 + . . scaffold1730 WUBlastX LINE_R2-Hero 289894 290991 192 + . . scaffold1730 WUBlastX LINE_R2-Hero 290986 291687 350 + . . scaffold1730 WUBlastX LINE_R2-Hero 291313 291933 103 + . . scaffold1730 WUBlastX LINE_R2-Hero 291796 292041 98 + . . scaffold1730 WUBlastX LINE_R2-Hero 291796 291930 104 + . . scaffold1730 WUBlastX LINE_R2-Hero 291926 292180 97 + . . scaffold1730 GLEAN promoter 295438 296437 0.999337 + . ID=CGI_10012267; scaffold1730 GLEAN mRNA 296438 298162 0.999337 + . ID=CGI_10012267; scaffold1730 TRF Tandem_Repeat 302480 302551 144 + . . scaffold1730 WUBlastX LINE_L2 303275 304111 172 + . . scaffold1730 WUBlastX LINE_L2 303521 304096 217 + . . scaffold1730 WUBlastX LINE_L2 305054 305152 22 + . . scaffold1730 WUBlastX LINE_L2 305099 308302 1839 + . . scaffold1730 TRF Tandem_Repeat 318647 318681 70 + . . scaffold1731 TRF Tandem_Repeat 4125 4188 121 + . . scaffold1731 TRF Tandem_Repeat 14304 14340 56 + . . scaffold1731 TRF Tandem_Repeat 15138 15230 140 + . . scaffold1731 TRF Tandem_Repeat 19756 21007 1773 + . . scaffold1731 GLEAN mRNA 22393 24983 1 - . ID=CGI_10001591; scaffold1731 WUBlastX LINE_RTE-BovB 23003 23110 61 + . . scaffold1731 GLEAN promoter 24984 25983 1 - . ID=CGI_10001591; scaffold1732 WUBlastX DNA_IS4EU 20177 20572 50 + . . scaffold1732 WUBlastX LTR_Pao 21428 21979 36 + . . scaffold1732 WUBlastX LTR_Pao 22364 24064 704 + . . scaffold1732 WUBlastX LTR_Pao 22637 24064 752 + . . scaffold1732 WUBlastX LTR_Pao 24052 24141 41 + . . scaffold1732 WUBlastX LTR_Pao 24126 25019 709 + . . scaffold1732 WUBlastX DNA_IS4EU 27049 27153 51 + . . scaffold1732 WUBlastX DNA_IS4EU 27685 27768 33 + . . scaffold1732 WUBlastX DNA_IS4EU 28043 28228 78 + . . scaffold1732 WUBlastX DNA_Kolobok-IS4 28332 29084 335 - . . scaffold1732 WUBlastX LTR_Pao 30927 31037 63 + . . scaffold1732 WUBlastX LTR_Pao 30945 31040 93 + . . scaffold1732 WUBlastX LTR_Pao 31027 31572 355 + . . scaffold1732 WUBlastX LTR_Pao 31574 31738 129 + . . scaffold1732 WUBlastX LTR_Pao 31699 32259 287 + . . scaffold1732 WUBlastX LTR_Pao 32244 32984 684 + . . scaffold1732 WUBlastX LTR_Pao 32981 33523 426 + . . scaffold1732 WUBlastX LTR_Pao 33535 33576 22 + . . scaffold1732 TRF Tandem_Repeat 34535 34562 56 + . . scaffold1732 WUBlastX DNA_IS4EU 34768 35010 72 + . . scaffold1732 WUBlastX DNA_IS4EU 34774 34962 79 + . . scaffold1732 TRF Tandem_Repeat 36034 37893 1690 + . . scaffold1732 WUBlastX LINE_RTE-X 41213 41482 60 + . . scaffold1732 WUBlastX LINE_RTE-X 41276 41476 75 + . . scaffold1732 WUBlastX LINE_RTE-X 41533 41724 61 + . . scaffold1732 WUBlastX LINE_RTE-X 41569 41811 28 + . . scaffold1732 TRF Tandem_Repeat 42770 42795 52 + . . scaffold1732 WUBlastX LTR_Gypsy-Cigr 53385 53999 144 + . . scaffold1732 WUBlastX LTR_Gypsy-Cigr 53496 54275 162 + . . scaffold1732 WUBlastX LTR_Gypsy 54069 54722 107 + . . scaffold1732 WUBlastX LTR_Gypsy-Cigr 54387 56045 935 + . . scaffold1732 WUBlastX LTR_Gypsy-Cigr 56029 57921 974 + . . scaffold1732 WUBlastX LTR_Copia 57907 58107 40 + . . scaffold1732 GLEAN mRNA 58427 58660 0.999955 - . ID=CGI_10003374; scaffold1732 GLEAN promoter 58661 59660 0.999955 - . ID=CGI_10003374; scaffold1732 GLEAN mRNA 59595 68502 0.651106 - . ID=CGI_10003375; scaffold1732 GLEAN promoter 68503 69502 0.651106 - . ID=CGI_10003375; scaffold1733 TRF Tandem_Repeat 533 570 76 + . . scaffold1733 TRF Tandem_Repeat 4735 4770 72 + . . scaffold1733 TRF Tandem_Repeat 7604 7712 146 + . . scaffold1733 GLEAN mRNA 18747 21655 0.777738 - . ID=CGI_10009475; scaffold1733 GLEAN promoter 20777 21776 0.999676 + . ID=CGI_10009476; scaffold1733 GLEAN promoter 21656 22655 0.777738 - . ID=CGI_10009475; scaffold1733 GLEAN mRNA 21777 31515 0.999676 + . ID=CGI_10009476; scaffold1733 TRF Tandem_Repeat 34325 34354 51 + . . scaffold1733 TRF Tandem_Repeat 37433 37586 84 + . . scaffold1733 TRF Tandem_Repeat 41705 41768 83 + . . scaffold1733 GLEAN promoter 42099 43098 0.558382 + . ID=CGI_10009477; scaffold1733 GLEAN mRNA 43099 51136 0.558382 + . ID=CGI_10009477; scaffold1733 GLEAN mRNA 55462 60080 0.996819 - . ID=CGI_10009478; scaffold1733 GLEAN promoter 60081 61080 0.996819 - . ID=CGI_10009478; scaffold1733 TRF Tandem_Repeat 60501 60609 121 + . . scaffold1733 GLEAN mRNA 62685 64242 1 - . ID=CGI_10009479; scaffold1733 GLEAN promoter 63754 64753 0.999999 + . ID=CGI_10009480; scaffold1733 GLEAN promoter 64243 65242 1 - . ID=CGI_10009479; scaffold1733 GLEAN mRNA 64754 74399 0.999999 + . ID=CGI_10009480; scaffold1733 TRF Tandem_Repeat 72824 72867 61 + . . scaffold1733 TRF Tandem_Repeat 72825 72863 51 + . . scaffold1733 TRF Tandem_Repeat 72875 73674 1093 + . . scaffold1733 GLEAN promoter 73607 74606 0.999661 + . ID=CGI_10009481; scaffold1733 GLEAN mRNA 74607 76109 0.999661 + . ID=CGI_10009481; scaffold1733 WUBlastX LINE_L1-Tx1 84654 84956 153 + . . scaffold1733 WUBlastX LINE_L1-Tx1 84891 85634 222 + . . scaffold1733 WUBlastX LINE_L1-Tx1 85616 86434 62 + . . scaffold1733 TRF Tandem_Repeat 86587 86629 86 + . . scaffold1733 TRF Tandem_Repeat 90227 90278 104 + . . scaffold1733 GLEAN mRNA 94325 96359 0.999821 - . ID=CGI_10009482; scaffold1733 GLEAN promoter 96360 97359 0.999821 - . ID=CGI_10009482; scaffold1733 TRF Tandem_Repeat 99580 99758 304 + . . scaffold1733 GLEAN mRNA 106803 108151 0.560066 - . ID=CGI_10009483; scaffold1733 GLEAN promoter 108152 109151 0.560066 - . ID=CGI_10009483; scaffold1733 WUBlastX LINE_RTE-X 114194 115132 423 - . . scaffold1733 WUBlastX LINE_RTE-X 114224 115375 153 - . . scaffold1733 TRF Tandem_Repeat 117311 117363 54 + . . scaffold1733 TRF Tandem_Repeat 117318 117345 56 + . . scaffold1733 GLEAN mRNA 121736 133088 0.999675 - . ID=CGI_10009484; scaffold1733 GLEAN promoter 132183 133182 1 + . ID=CGI_10009485; scaffold1733 GLEAN promoter 133089 134088 0.999675 - . ID=CGI_10009484; scaffold1733 GLEAN mRNA 133183 141314 1 + . ID=CGI_10009485; scaffold1733 GLEAN promoter 142872 143871 0.999995 + . ID=CGI_10009486; scaffold1733 GLEAN mRNA 143872 144630 0.999995 + . ID=CGI_10009486; scaffold1733 GLEAN mRNA 149604 151271 0.99935 - . ID=CGI_10009487; scaffold1733 GLEAN promoter 151272 152271 0.99935 - . ID=CGI_10009487; scaffold1733 GLEAN promoter 155260 156259 0.701996 + . ID=CGI_10009488; scaffold1733 GLEAN mRNA 156260 181153 0.701996 + . ID=CGI_10009488; scaffold1733 TRF Tandem_Repeat 159621 159671 102 + . . scaffold1733 WUBlastX LINE_CR1 163751 164173 24 + . . scaffold1733 WUBlastX LINE_CR1 164541 164837 35 + . . scaffold1733 WUBlastX LINE_CR1-L2 164622 164837 41 + . . scaffold1733 WUBlastX LINE_L2 164854 165231 162 + . . scaffold1733 WUBlastX LINE_CR1-L2 164854 165315 91 + . . scaffold1733 TRF Tandem_Repeat 165874 165962 169 + . . scaffold1733 WUBlastX LTR_Pao 175077 176183 1120 + . . scaffold1733 TRF Tandem_Repeat 178481 178547 125 + . . scaffold1733 TRF Tandem_Repeat 179554 179602 98 + . . scaffold1733 GLEAN promoter 181036 182035 0.932607 + . ID=CGI_10009489; scaffold1733 TRF Tandem_Repeat 181930 181975 92 + . . scaffold1733 GLEAN mRNA 182036 183728 0.932607 + . ID=CGI_10009489; scaffold1733 TRF Tandem_Repeat 201194 201225 64 + . . scaffold1733 WUBlastX LINE_L1-Tx1 219651 219863 58 - . . scaffold1733 WUBlastX LINE_L1-Tx1 219651 219959 36 - . . scaffold1733 WUBlastX LINE_L1-Tx1 220398 220595 44 - . . scaffold1733 WUBlastX LINE_L1-Tx1 220564 221640 710 - . . scaffold1733 WUBlastX LINE_L1 220588 221841 358 - . . scaffold1733 GLEAN promoter 223846 224845 0.367257 + . ID=CGI_10009490; scaffold1733 GLEAN promoter 224449 225448 0.508137 + . ID=CGI_10009491; scaffold1733 GLEAN mRNA 224846 225334 0.367257 + . ID=CGI_10009490; scaffold1733 GLEAN mRNA 225449 228993 0.508137 + . ID=CGI_10009491; scaffold1733 TRF Tandem_Repeat 228255 228329 87 + . . scaffold1733 WUBlastX LINE_L1-Tx1 230143 230952 144 - . . scaffold1733 WUBlastX LINE_L1-Tx1 230970 231437 200 - . . scaffold1734 TRF Tandem_Repeat 1162 1193 64 + . . scaffold1734 TRF Tandem_Repeat 1978 2002 50 + . . scaffold1734 TRF Tandem_Repeat 2950 2995 92 + . . scaffold1734 TRF Tandem_Repeat 5095 5149 56 + . . scaffold1734 TRF Tandem_Repeat 5098 5153 62 + . . scaffold1734 GLEAN promoter 5869 6868 0.958077 + . ID=CGI_10010533; scaffold1734 TRF Tandem_Repeat 5908 6014 191 + . . scaffold1734 GLEAN mRNA 6869 13096 0.958077 + . ID=CGI_10010533; scaffold1734 TRF Tandem_Repeat 7433 7648 281 + . . scaffold1734 TRF Tandem_Repeat 11017 11057 73 + . . scaffold1734 TRF Tandem_Repeat 11244 11290 94 + . . scaffold1734 TRF Tandem_Repeat 18573 18645 146 + . . scaffold1734 GLEAN promoter 19112 20111 0.84036 + . ID=CGI_10010534; scaffold1734 GLEAN mRNA 20112 24992 0.84036 + . ID=CGI_10010534; scaffold1734 TRF Tandem_Repeat 20356 20387 64 + . . scaffold1734 TRF Tandem_Repeat 53128 53192 121 + . . scaffold1734 TRF Tandem_Repeat 53303 53332 60 + . . scaffold1734 TRF Tandem_Repeat 64668 64756 137 + . . scaffold1734 TRF Tandem_Repeat 93720 93766 85 + . . scaffold1734 WUBlastX LINE_RTE-X 108494 108718 38 + . . scaffold1734 WUBlastX LINE_RTE-X 108539 108703 55 + . . scaffold1734 TRF Tandem_Repeat 114108 114134 54 + . . scaffold1734 TRF Tandem_Repeat 117004 117054 102 + . . scaffold1734 WUBlastX LINE_L2 126057 126560 33 - . . scaffold1734 WUBlastX LINE_L2 126159 127832 1004 - . . scaffold1734 GLEAN mRNA 140475 140855 0.997342 - . ID=CGI_10010536; scaffold1734 GLEAN promoter 140856 141855 0.997342 - . ID=CGI_10010536; scaffold1734 GLEAN mRNA 141914 142183 0.999372 - . ID=CGI_10010538; scaffold1734 GLEAN promoter 142184 143183 0.999372 - . ID=CGI_10010538; scaffold1734 GLEAN mRNA 142186 142614 0.776794 - . ID=CGI_10010539; scaffold1734 GLEAN promoter 142615 143614 0.776794 - . ID=CGI_10010539; scaffold1734 WUBlastX DNA_TcMar-Tc1 145844 146092 73 - . . scaffold1734 WUBlastX DNA_TcMar-Tc1 145916 146071 80 - . . scaffold1734 WUBlastX DNA_TcMar-Tc1 146416 147225 140 - . . scaffold1734 GLEAN promoter 147171 148170 0.861566 + . ID=CGI_10010540; scaffold1734 TRF Tandem_Repeat 147853 148043 249 + . . scaffold1734 GLEAN mRNA 148171 149324 0.861566 + . ID=CGI_10010540; scaffold1734 TRF Tandem_Repeat 150388 150435 96 + . . scaffold1734 GLEAN promoter 151020 152019 0.46186 + . ID=CGI_10010541; scaffold1734 GLEAN mRNA 152020 160994 0.46186 + . ID=CGI_10010541; scaffold1734 WUBlastX LINE_CR1 153676 154467 83 - . . scaffold1734 WUBlastX LINE_CR1-L2 153832 154470 112 - . . scaffold1734 WUBlastX LINE_L2 153895 154668 85 - . . scaffold1734 WUBlastX LINE_L2 153991 154467 197 - . . scaffold1734 TRF Tandem_Repeat 164068 164777 331 + . . scaffold1734 TRF Tandem_Repeat 164909 165061 141 + . . scaffold1734 TRF Tandem_Repeat 166678 167041 183 + . . scaffold1734 TRF Tandem_Repeat 166722 167041 302 + . . scaffold1734 GLEAN mRNA 167531 172003 0.696317 - . ID=CGI_10010542; scaffold1734 GLEAN promoter 172004 173003 0.696317 - . ID=CGI_10010542; scaffold1734 TRF Tandem_Repeat 176898 176927 51 + . . scaffold1734 TRF Tandem_Repeat 181203 181259 96 + . . scaffold1734 TRF Tandem_Repeat 183380 183428 62 + . . scaffold1734 TRF Tandem_Repeat 183383 183428 51 + . . scaffold1734 WUBlastX DNA_IS4EU 218896 219069 50 - . . scaffold1734 WUBlastX DNA_IS4EU 218943 219299 53 - . . scaffold1734 WUBlastX DNA_IS4EU 219093 219356 111 - . . scaffold1734 WUBlastX DNA_Kolobok-IS4 219344 219556 31 - . . scaffold1734 TRF Tandem_Repeat 220032 220081 57 + . . scaffold1734 TRF Tandem_Repeat 220405 220452 96 + . . scaffold1734 TRF Tandem_Repeat 221197 221756 894 + . . scaffold1734 TRF Tandem_Repeat 221197 221756 852 + . . scaffold1734 WUBlastX LTR_DIRS 224136 224303 49 - . . scaffold1734 TRF Tandem_Repeat 232955 233182 322 + . . scaffold1735 TRF Tandem_Repeat 3103 3154 104 + . . scaffold1735 WUBlastX LINE_RTE-X 7177 7605 41 - . . scaffold1735 WUBlastX LINE_I 7258 7845 160 - . . scaffold1735 WUBlastX LINE_L2 7288 7950 73 - . . scaffold1735 WUBlastX LINE_RTE-X 7844 8218 67 - . . scaffold1735 WUBlastX LINE_Penelope 9962 10402 70 - . . scaffold1735 WUBlastX LINE_Penelope 10433 11137 136 + . . scaffold1735 WUBlastX LINE_Penelope 11347 11856 263 - . . scaffold1735 WUBlastX LINE_Penelope 11841 12122 70 - . . scaffold1735 WUBlastX LINE_L1-Tx1 12147 13523 573 - . . scaffold1735 WUBlastX LINE_L1-Tx1 12156 14087 541 - . . scaffold1735 WUBlastX LINE_RTE-RTE 14038 14640 22 - . . scaffold1735 WUBlastX LINE_L1-Tx1 14059 14442 138 - . . scaffold1735 WUBlastX LINE_RTE-X 15022 15234 46 + . . scaffold1735 GLEAN promoter 16750 17749 0.742127 + . ID=CGI_10003739; scaffold1735 WUBlastX LINE_L2 17548 17697 23 + . . scaffold1735 GLEAN mRNA 17750 19380 0.742127 + . ID=CGI_10003739; scaffold1735 WUBlastX DNA_MuDR 19466 20167 71 + . . scaffold1735 TRF Tandem_Repeat 21171 21371 375 + . . scaffold1735 GLEAN promoter 21941 22940 1 + . ID=CGI_10003741; scaffold1735 GLEAN mRNA 22941 26319 1 + . ID=CGI_10003741; scaffold1735 GLEAN mRNA 29359 31759 1 - . ID=CGI_10003742; scaffold1735 GLEAN promoter 30996 31995 1 + . ID=CGI_10003743; scaffold1735 GLEAN promoter 31760 32759 1 - . ID=CGI_10003742; scaffold1735 GLEAN mRNA 31996 40108 1 + . ID=CGI_10003743; scaffold1735 TRF Tandem_Repeat 33649 33674 52 + . . scaffold1735 TRF Tandem_Repeat 33672 33716 90 + . . scaffold1735 TRF Tandem_Repeat 46816 47165 310 + . . scaffold1735 WUBlastX LINE_RTE-X 47821 48003 95 + . . scaffold1735 GLEAN mRNA 52765 64239 0.99883 - . ID=CGI_10003744; scaffold1735 TRF Tandem_Repeat 61794 61845 90 + . . scaffold1735 TRF Tandem_Repeat 63662 63687 52 + . . scaffold1735 GLEAN promoter 64240 65239 0.99883 - . ID=CGI_10003744; scaffold1735 GLEAN mRNA 65063 80518 0.999998 - . ID=CGI_10003745; scaffold1735 TRF Tandem_Repeat 65266 65420 283 + . . scaffold1735 TRF Tandem_Repeat 73522 73546 50 + . . scaffold1735 GLEAN promoter 80519 81518 0.999998 - . ID=CGI_10003745; scaffold1735 TRF Tandem_Repeat 81276 81310 63 + . . scaffold1735 TRF Tandem_Repeat 81850 82038 188 + . . scaffold1735 TRF Tandem_Repeat 81850 82081 165 + . . scaffold1736 GLEAN mRNA 824 5312 0.5 - . ID=CGI_10020946; scaffold1736 GLEAN promoter 5313 6312 0.5 - . ID=CGI_10020946; scaffold1736 TRF Tandem_Repeat 8718 8806 83 + . . scaffold1736 TRF Tandem_Repeat 8914 9011 81 + . . scaffold1736 TRF Tandem_Repeat 9520 9611 141 + . . scaffold1736 TRF Tandem_Repeat 9689 9848 160 + . . scaffold1736 TRF Tandem_Repeat 10034 10127 120 + . . scaffold1736 GLEAN promoter 12332 13331 0.947251 + . ID=CGI_10020947; scaffold1736 TRF Tandem_Repeat 12915 13238 488 + . . scaffold1736 GLEAN mRNA 13332 24285 0.947251 + . ID=CGI_10020947; scaffold1736 GLEAN mRNA 16928 18091 1 - . ID=CGI_10020948; scaffold1736 GLEAN promoter 18092 19091 1 - . ID=CGI_10020948; scaffold1736 WUBlastX DNA_hAT-Blackja 23195 23443 66 - . . scaffold1736 TRF Tandem_Repeat 27654 29585 2492 + . . scaffold1736 WUBlastX LTR_DIRS 39582 40160 482 + . . scaffold1736 WUBlastX LTR_DIRS 40133 40969 609 + . . scaffold1736 GLEAN mRNA 44144 44524 0.618241 - . ID=CGI_10020949; scaffold1736 GLEAN promoter 44525 45524 0.618241 - . ID=CGI_10020949; scaffold1736 GLEAN promoter 49938 50937 0.999612 + . ID=CGI_10020950; scaffold1736 GLEAN mRNA 50938 59700 0.999612 + . ID=CGI_10020950; scaffold1736 TRF Tandem_Repeat 60375 60405 53 + . . scaffold1736 TRF Tandem_Repeat 61746 61783 67 + . . scaffold1736 TRF Tandem_Repeat 65698 65734 74 + . . scaffold1736 TRF Tandem_Repeat 75318 75350 66 + . . scaffold1736 GLEAN promoter 76728 77727 0.651132 + . ID=CGI_10020951; scaffold1736 GLEAN mRNA 77728 92718 0.651132 + . ID=CGI_10020951; scaffold1736 GLEAN mRNA 98989 101328 0.539679 - . ID=CGI_10020952; scaffold1736 GLEAN promoter 101329 102328 0.539679 - . ID=CGI_10020952; scaffold1736 GLEAN mRNA 104842 120765 0.540998 - . ID=CGI_10020953; scaffold1736 TRF Tandem_Repeat 111220 111309 146 + . . scaffold1736 TRF Tandem_Repeat 116997 117163 180 + . . scaffold1736 GLEAN promoter 120766 121765 0.540998 - . ID=CGI_10020953; scaffold1736 TRF Tandem_Repeat 133342 133434 102 + . . scaffold1736 TRF Tandem_Repeat 135113 135176 51 + . . scaffold1736 TRF Tandem_Repeat 135668 135752 143 + . . scaffold1736 TRF Tandem_Repeat 142295 143231 1599 + . . scaffold1736 GLEAN mRNA 155787 189151 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 167355 167470 214 + . . scaffold1736 TRF Tandem_Repeat 168396 168444 98 + . . scaffold1736 TRF Tandem_Repeat 180234 180279 92 + . . scaffold1736 TRF Tandem_Repeat 182275 182323 98 + . . scaffold1736 TRF Tandem_Repeat 184657 184882 153 + . . scaffold1736 TRF Tandem_Repeat 186332 186404 146 + . . scaffold1736 TRF Tandem_Repeat 188234 188308 132 + . . scaffold1736 GLEAN promoter 189152 190151 0.835567 - . ID=CGI_10020954; scaffold1736 TRF Tandem_Repeat 194879 194905 54 + . . scaffold1736 TRF Tandem_Repeat 195924 195948 50 + . . scaffold1736 TRF Tandem_Repeat 197060 197150 93 + . . scaffold1736 GLEAN mRNA 197989 202597 0.999994 - . ID=CGI_10020955; scaffold1736 GLEAN promoter 202598 203597 0.999994 - . ID=CGI_10020955; scaffold1736 WUBlastX LINE_CR1 205267 205440 35 + . . scaffold1736 WUBlastX LINE_CR1-L2 205348 205473 39 + . . scaffold1736 WUBlastX LINE_L2 205428 206135 340 + . . scaffold1736 GLEAN promoter 218705 219704 1 + . ID=CGI_10020956; scaffold1736 GLEAN mRNA 219705 224840 1 + . ID=CGI_10020956; scaffold1736 GLEAN promoter 224711 225710 0.989766 + . ID=CGI_10020957; scaffold1736 GLEAN mRNA 225711 238419 0.989766 + . ID=CGI_10020957; scaffold1736 GLEAN promoter 237697 238696 0.999481 + . ID=CGI_10020958; scaffold1736 GLEAN mRNA 238697 239542 0.999481 + . ID=CGI_10020958; scaffold1736 GLEAN promoter 242071 243070 0.999978 + . ID=CGI_10020959; scaffold1736 GLEAN mRNA 243071 244258 0.999978 + . ID=CGI_10020959; scaffold1736 GLEAN promoter 248085 249084 0.748826 + . ID=CGI_10020960; scaffold1736 GLEAN mRNA 249085 254617 0.748826 + . ID=CGI_10020960; scaffold1736 GLEAN mRNA 258107 262529 1 - . ID=CGI_10020961; scaffold1736 GLEAN promoter 262530 263529 1 - . ID=CGI_10020961; scaffold1736 TRF Tandem_Repeat 267393 267435 86 + . . scaffold1736 GLEAN promoter 267738 268737 0.999662 + . ID=CGI_10020962; scaffold1736 GLEAN mRNA 268738 276421 0.999662 + . ID=CGI_10020962; scaffold1736 WUBlastX LINE_L1-Tx1 271881 272300 30 + . . scaffold1736 WUBlastX LINE_L1-Tx1 272605 272766 22 + . . scaffold1736 TRF Tandem_Repeat 274150 274206 107 + . . scaffold1736 WUBlastX LINE_RTE-X 300871 301257 78 - . . scaffold1736 TRF Tandem_Repeat 306533 306563 55 + . . scaffold1736 GLEAN promoter 313258 314257 0.810404 + . ID=CGI_10020963; scaffold1736 GLEAN mRNA 314258 316855 0.810404 + . ID=CGI_10020963; scaffold1736 GLEAN promoter 323237 324236 0.999907 + . ID=CGI_10020964; scaffold1736 GLEAN mRNA 324237 335420 0.999907 + . ID=CGI_10020964; scaffold1736 GLEAN mRNA 337144 346376 1 - . ID=CGI_10020965; scaffold1736 TRF Tandem_Repeat 341945 342006 106 + . . scaffold1736 TRF Tandem_Repeat 345236 345304 138 + . . scaffold1736 GLEAN promoter 346377 347376 1 - . ID=CGI_10020965; scaffold1736 TRF Tandem_Repeat 349384 350888 1827 + . . scaffold1736 TRF Tandem_Repeat 349412 350888 1497 + . . scaffold1736 GLEAN mRNA 355111 363062 0.999676 - . ID=CGI_10020966; scaffold1736 GLEAN promoter 363063 364062 0.999676 - . ID=CGI_10020966; scaffold1736 TRF Tandem_Repeat 364028 364052 50 + . . scaffold1736 GLEAN mRNA 366824 375681 0.972064 - . ID=CGI_10020967; scaffold1736 WUBlastX LINE_R1 372583 372963 28 - . . scaffold1736 GLEAN promoter 375682 376681 0.972064 - . ID=CGI_10020967; scaffold1736 GLEAN mRNA 375691 379728 0.99733 - . ID=CGI_10020968; scaffold1736 GLEAN promoter 379729 380728 0.99733 - . ID=CGI_10020968; scaffold1736 GLEAN mRNA 395946 400139 1 - . ID=CGI_10020969; scaffold1736 GLEAN promoter 399457 400456 1 + . ID=CGI_10020970; scaffold1736 GLEAN promoter 400140 401139 1 - . ID=CGI_10020969; scaffold1736 GLEAN mRNA 400457 403032 1 + . ID=CGI_10020970; scaffold1736 GLEAN mRNA 404291 421670 0.999676 - . ID=CGI_10020971; scaffold1736 GLEAN promoter 421671 422670 0.999676 - . ID=CGI_10020971; scaffold1736 GLEAN mRNA 423013 427545 1 - . ID=CGI_10020972; scaffold1736 GLEAN promoter 427546 428545 1 - . ID=CGI_10020972; scaffold1736 GLEAN mRNA 428450 439970 0.999921 - . ID=CGI_10020973; scaffold1736 TRF Tandem_Repeat 432024 432096 146 + . . scaffold1736 TRF Tandem_Repeat 433096 433139 88 + . . scaffold1736 GLEAN promoter 433184 434183 0.997877 + . ID=CGI_10020974; scaffold1736 GLEAN mRNA 434184 458331 0.997877 + . ID=CGI_10020974; scaffold1736 GLEAN promoter 439971 440970 0.999921 - . ID=CGI_10020973; scaffold1736 TRF Tandem_Repeat 440670 441958 1877 + . . scaffold1736 GLEAN mRNA 445111 450606 1 - . ID=CGI_10020975; scaffold1736 GLEAN promoter 450607 451606 1 - . ID=CGI_10020975; scaffold1736 TRF Tandem_Repeat 452350 452384 52 + . . scaffold1736 TRF Tandem_Repeat 452589 453343 1032 + . . scaffold1736 GLEAN mRNA 461528 465631 0.999237 - . ID=CGI_10020976; scaffold1736 GLEAN promoter 465632 466631 0.999237 - . ID=CGI_10020976; scaffold1736 WUBlastX LINE_RTE-X 469951 470220 98 - . . scaffold1736 WUBlastX LINE_RTE-X 470041 470241 108 - . . scaffold1736 WUBlastX LINE_RTE-X 470246 470308 41 - . . scaffold1736 WUBlastX LINE_L2 472365 472418 31 + . . scaffold1736 GLEAN promoter 472416 473415 0.999415 + . ID=CGI_10020977; scaffold1736 WUBlastX LINE_L2 472444 472845 62 + . . scaffold1736 GLEAN mRNA 473416 478639 0.999415 + . ID=CGI_10020977; scaffold1736 TRF Tandem_Repeat 473685 473740 112 + . . scaffold1736 GLEAN mRNA 481138 487803 1 - . ID=CGI_10020978; scaffold1736 GLEAN promoter 487804 488803 1 - . ID=CGI_10020978; scaffold1736 WUBlastX LTR_Gypsy 489636 494306 3134 + . . scaffold1736 WUBlastX DNA_TcMar-Tc1 495015 496028 394 + . . scaffold1736 GLEAN promoter 499231 500230 1 + . ID=CGI_10020979; scaffold1736 GLEAN mRNA 500231 501454 1 + . ID=CGI_10020979; scaffold1736 TRF Tandem_Repeat 501155 501197 86 + . . scaffold1736 TRF Tandem_Repeat 503517 503558 84 + . . scaffold1736 GLEAN promoter 503839 504838 0.999676 + . ID=CGI_10020980; scaffold1736 GLEAN mRNA 504839 510566 0.999676 + . ID=CGI_10020980; scaffold1736 TRF Tandem_Repeat 505140 505231 107 + . . scaffold1736 TRF Tandem_Repeat 505308 505425 105 + . . scaffold1736 TRF Tandem_Repeat 505477 505603 121 + . . scaffold1736 TRF Tandem_Repeat 505695 505788 91 + . . scaffold1736 WUBlastX LTR_Gypsy 516516 516806 27 - . . scaffold1736 WUBlastX LTR_Gypsy 516564 518363 519 - . . scaffold1736 WUBlastX LTR_Gypsy 517035 520469 1157 - . . scaffold1736 WUBlastX LTR_Gypsy 519723 520610 48 - . . scaffold1736 TRF Tandem_Repeat 526161 526197 74 + . . scaffold1736 WUBlastX LINE_CR1-L2 528482 528610 20 - . . scaffold1736 WUBlastX LINE_L2 528705 529133 42 - . . scaffold1736 WUBlastX LINE_L2 528849 529154 63 - . . scaffold1736 WUBlastX LINE_CR1-L2 528903 529181 84 - . . scaffold1736 WUBlastX LINE_CR1-L2 528921 529133 86 - . . scaffold1736 WUBlastX LINE_CR1-L2 529133 529237 59 - . . scaffold1736 TRF Tandem_Repeat 530108 530160 99 + . . scaffold1736 TRF Tandem_Repeat 530321 530405 149 + . . scaffold1736 TRF Tandem_Repeat 531964 532014 79 + . . scaffold1736 WUBlastX LINE_RTE-BovB 534390 534509 25 - . . scaffold1736 GLEAN promoter 535457 536456 0.932154 + . ID=CGI_10020981; scaffold1736 GLEAN promoter 535882 536881 0.725497 + . ID=CGI_10020982; scaffold1736 GLEAN mRNA 536457 536726 0.932154 + . ID=CGI_10020981; scaffold1736 GLEAN mRNA 536882 538173 0.725497 + . ID=CGI_10020982; scaffold1736 GLEAN mRNA 539074 539628 1 - . ID=CGI_10020983; scaffold1736 GLEAN promoter 539629 540628 1 - . ID=CGI_10020983; scaffold1736 TRF Tandem_Repeat 540193 540258 123 + . . scaffold1736 GLEAN promoter 542626 543625 0.999797 + . ID=CGI_10020984; scaffold1736 GLEAN mRNA 543626 550514 0.999797 + . ID=CGI_10020984; scaffold1736 TRF Tandem_Repeat 546209 546266 116 + . . scaffold1736 WUBlastX LINE_CR1-L2 559576 559821 131 + . . scaffold1736 WUBlastX LINE_Jockey 559633 560151 98 + . . scaffold1736 WUBlastX LINE_CR1-L2 559633 559821 157 + . . scaffold1736 WUBlastX LINE_L2 559633 559944 130 + . . scaffold1736 WUBlastX LINE_CR1 560736 561749 120 + . . scaffold1736 WUBlastX LINE_L2 560898 561773 503 + . . scaffold1736 WUBlastX LINE_L2 561799 562128 107 + . . scaffold1736 GLEAN promoter 564112 565111 0.999231 + . ID=CGI_10020985; scaffold1736 GLEAN mRNA 565112 572691 0.999231 + . ID=CGI_10020985; scaffold1736 TRF Tandem_Repeat 573856 573883 56 + . . scaffold1736 GLEAN promoter 579671 580670 0.511735 + . ID=CGI_10020986; scaffold1736 GLEAN mRNA 580671 608193 0.511735 + . ID=CGI_10020986; scaffold1736 TRF Tandem_Repeat 582083 582132 100 + . . scaffold1736 GLEAN mRNA 617815 628143 0.537791 - . ID=CGI_10020987; scaffold1736 TRF Tandem_Repeat 619997 621006 742 + . . scaffold1736 TRF Tandem_Repeat 619997 621001 742 + . . scaffold1736 TRF Tandem_Repeat 624788 624819 64 + . . scaffold1736 WUBlastX LINE_RTE-X 627053 627490 56 - . . scaffold1736 WUBlastX LINE_RTE-X 627197 627538 64 - . . scaffold1736 WUBlastX LINE_RTE-X 627538 627669 46 - . . scaffold1736 WUBlastX LINE_RTE-X 627585 627815 82 - . . scaffold1736 WUBlastX LINE_RTE-X 627627 627869 67 - . . scaffold1736 WUBlastX LINE_RTE-X 627627 627938 26 - . . scaffold1736 GLEAN promoter 628144 629143 0.537791 - . ID=CGI_10020987; scaffold1736 WUBlastX DNA_hAT-Tip100 633002 633112 30 - . . scaffold1736 WUBlastX DNA_hAT-Tip100 633028 633525 61 - . . scaffold1736 WUBlastX DNA_hAT-Tip100 633103 633561 134 - . . scaffold1736 WUBlastX DNA_hAT-Tip100 633611 633967 53 - . . scaffold1736 WUBlastX LINE_RTE-X 637778 638023 31 + . . scaffold1736 WUBlastX LINE_RTE-X 637877 638035 56 + . . scaffold1736 WUBlastX LINE_RTE-X 637877 638128 41 + . . scaffold1736 WUBlastX DNA_IS4EU 640227 640970 335 + . . scaffold1736 WUBlastX DNA_IS4EU 641760 641963 83 - . . scaffold1736 WUBlastX DNA_IS4EU 641763 642071 25 - . . scaffold1736 WUBlastX LINE_RTE-X 645923 646378 39 + . . scaffold1736 WUBlastX LINE_RTE-X 646019 646276 58 + . . scaffold1736 WUBlastX LINE_RTE-X 646040 646228 63 + . . scaffold1736 WUBlastX LINE_RTE-X 646040 646378 51 + . . scaffold1736 GLEAN promoter 647845 648844 0.558382 + . ID=CGI_10020988; scaffold1736 GLEAN mRNA 648845 650549 0.558382 + . ID=CGI_10020988; scaffold1736 WUBlastX DNA_Harbinger 655989 656222 108 - . . scaffold1736 WUBlastX DNA_Harbinger 656028 656240 130 - . . scaffold1736 WUBlastX DNA_Harbinger 656480 656968 211 - . . scaffold1736 TRF Tandem_Repeat 659155 659205 102 + . . scaffold1736 TRF Tandem_Repeat 670185 670277 107 + . . scaffold1737 WUBlastX DNA_TcMar-Tc1 610 984 49 - . . scaffold1737 WUBlastX LINE_L1-Tx1 22447 22653 22 - . . scaffold1737 WUBlastX LINE_CR1 25965 26213 28 - . . scaffold1737 WUBlastX LINE_RTE-X 25998 26186 36 - . . scaffold1737 WUBlastX LINE_RTE-X 26034 26198 43 - . . scaffold1737 WUBlastX LINE_CR1-L2 26207 26290 25 - . . scaffold1737 WUBlastX LINE_RTE-X 26308 26448 21 - . . scaffold1737 WUBlastX LINE_RTE-X 26362 26673 53 - . . scaffold1737 WUBlastX LINE_Jockey 26705 26875 45 - . . scaffold1737 WUBlastX LINE_Proto2 27767 28006 21 - . . scaffold1737 TRF Tandem_Repeat 29629 29686 73 + . . scaffold1737 TRF Tandem_Repeat 29635 29686 86 + . . scaffold1737 GLEAN mRNA 38791 59854 0.987459 - . ID=CGI_10018247; scaffold1737 GLEAN promoter 59855 60854 0.987459 - . ID=CGI_10018247; scaffold1737 WUBlastX DNA_PiggyBac 62492 63226 55 + . . scaffold1737 WUBlastX DNA_PiggyBac 62618 64009 221 + . . scaffold1737 TRF Tandem_Repeat 64048 64140 73 + . . scaffold1737 TRF Tandem_Repeat 64071 64351 350 + . . scaffold1737 TRF Tandem_Repeat 68123 68358 305 + . . scaffold1737 TRF Tandem_Repeat 72069 72222 106 + . . scaffold1737 TRF Tandem_Repeat 85431 85485 110 + . . scaffold1737 TRF Tandem_Repeat 87017 87167 160 + . . scaffold1737 TRF Tandem_Repeat 89737 89833 117 + . . scaffold1737 TRF Tandem_Repeat 90008 90046 51 + . . scaffold1737 TRF Tandem_Repeat 104463 104529 89 + . . scaffold1737 TRF Tandem_Repeat 105040 105077 76 + . . scaffold1737 GLEAN promoter 112537 113536 0.828788 + . ID=CGI_10018248; scaffold1737 GLEAN mRNA 113537 126819 0.828788 + . ID=CGI_10018248; scaffold1737 TRF Tandem_Repeat 122072 122099 56 + . . scaffold1737 TRF Tandem_Repeat 139211 139237 54 + . . scaffold1737 TRF Tandem_Repeat 140398 140448 102 + . . scaffold1737 WUBlastX LINE_CR1-L2 141680 141817 21 - . . scaffold1737 WUBlastX LINE_CR1-L2 141762 142118 52 - . . scaffold1737 WUBlastX LINE_CR1-L2 141819 142118 87 - . . scaffold1737 WUBlastX LINE_CR1-L2 141819 142199 20 - . . scaffold1737 WUBlastX LINE_L2 142250 142552 49 - . . scaffold1737 TRF Tandem_Repeat 154221 154489 324 + . . scaffold1737 TRF Tandem_Repeat 156056 156160 100 + . . scaffold1737 TRF Tandem_Repeat 156063 156161 108 + . . scaffold1737 TRF Tandem_Repeat 156393 156705 364 + . . scaffold1737 TRF Tandem_Repeat 156400 156533 160 + . . scaffold1737 TRF Tandem_Repeat 156422 156754 389 + . . scaffold1737 TRF Tandem_Repeat 156431 156752 338 + . . scaffold1737 TRF Tandem_Repeat 168509 169612 1172 + . . scaffold1737 WUBlastX LINE_R1 174794 174880 22 + . . scaffold1737 WUBlastX LINE_L1 175096 175128 20 + . . scaffold1737 WUBlastX LINE_L1-Tx1 175350 175535 38 + . . scaffold1737 WUBlastX LINE_L1-Tx1 175383 175553 99 + . . scaffold1737 WUBlastX LINE_L1-Tx1 175543 179148 1800 + . . scaffold1737 TRF Tandem_Repeat 183698 183779 92 + . . scaffold1737 WUBlastX LTR_DIRS 186563 187084 267 + . . scaffold1737 TRF Tandem_Repeat 190000 191335 1491 + . . scaffold1737 TRF Tandem_Repeat 190239 191335 1268 + . . scaffold1737 WUBlastX LINE_RTE-X 191984 192475 132 + . . scaffold1737 WUBlastX LINE_RTE-X 192050 192466 207 + . . scaffold1737 TRF Tandem_Repeat 219706 219769 74 + . . scaffold1737 TRF Tandem_Repeat 236738 237439 1049 + . . scaffold1737 TRF Tandem_Repeat 243951 244014 65 + . . scaffold1737 TRF Tandem_Repeat 243951 244014 110 + . . scaffold1737 TRF Tandem_Repeat 243954 244014 86 + . . scaffold1737 GLEAN promoter 247941 248940 0.999982 + . ID=CGI_10018249; scaffold1737 GLEAN mRNA 248941 249225 0.999982 + . ID=CGI_10018249; scaffold1737 TRF Tandem_Repeat 254198 254252 56 + . . scaffold1737 TRF Tandem_Repeat 254201 254252 68 + . . scaffold1737 TRF Tandem_Repeat 254201 254252 68 + . . scaffold1737 TRF Tandem_Repeat 270532 270560 58 + . . scaffold1737 WUBlastX LINE_Penelope 273644 273952 25 - . . scaffold1737 WUBlastX LINE_Penelope 273704 273955 35 - . . scaffold1737 WUBlastX LINE_Penelope 273755 274159 72 - . . scaffold1737 WUBlastX LINE_Penelope 274332 274655 57 - . . scaffold1737 WUBlastX LINE_Penelope 274335 274541 89 - . . scaffold1737 WUBlastX LINE_Penelope 274649 274807 75 - . . scaffold1737 WUBlastX LINE_Penelope 275622 275906 44 - . . scaffold1737 WUBlastX LINE_Penelope 275676 276065 168 - . . scaffold1737 WUBlastX LINE_Penelope 276040 276714 64 + . . scaffold1737 WUBlastX LINE_Penelope 276250 276882 192 + . . scaffold1737 WUBlastX LINE_Penelope 276738 277391 97 + . . scaffold1737 TRF Tandem_Repeat 293982 294096 178 + . . scaffold1737 TRF Tandem_Repeat 303047 303088 68 + . . scaffold1737 TRF Tandem_Repeat 321176 321225 59 + . . scaffold1737 TRF Tandem_Repeat 337859 337896 76 + . . scaffold1737 TRF Tandem_Repeat 338905 338952 87 + . . scaffold1737 WUBlastX LTR_Gypsy 341127 341435 126 + . . scaffold1737 WUBlastX LTR_Gypsy 341211 341435 145 + . . scaffold1737 WUBlastX LTR_Gypsy 341435 341659 165 + . . scaffold1737 WUBlastX LTR_Gypsy 341453 341719 51 + . . scaffold1737 TRF Tandem_Repeat 348438 348466 58 + . . scaffold1737 WUBlastX DNA_TcMar-Marin 363913 364317 231 - . . scaffold1737 TRF Tandem_Repeat 364338 364382 51 + . . scaffold1737 WUBlastX DNA_TcMar-Marin 364520 364966 256 - . . scaffold1737 TRF Tandem_Repeat 365475 365526 104 + . . scaffold1737 WUBlastX DNA_TcMar-Marin 378193 378597 208 - . . scaffold1737 WUBlastX DNA_TcMar-Marin 378786 379007 164 - . . scaffold1737 WUBlastX LTR_ERV1 387165 387344 25 + . . scaffold1737 WUBlastX LTR_Copia 387186 387293 31 + . . scaffold1737 TRF Tandem_Repeat 387606 387699 57 + . . scaffold1737 TRF Tandem_Repeat 388746 388843 69 + . . scaffold1737 TRF Tandem_Repeat 389844 389950 124 + . . scaffold1737 TRF Tandem_Repeat 391420 391509 117 + . . scaffold1737 WUBlastX DNA_Harbinger 395011 395334 164 + . . scaffold1737 GLEAN mRNA 399131 417562 0.999999 - . ID=CGI_10018250; scaffold1737 TRF Tandem_Repeat 401327 402932 2959 + . . scaffold1737 TRF Tandem_Repeat 407226 407721 582 + . . scaffold1737 TRF Tandem_Repeat 409975 410415 677 + . . scaffold1737 TRF Tandem_Repeat 412067 412270 311 + . . scaffold1737 TRF Tandem_Repeat 413920 414149 397 + . . scaffold1737 GLEAN promoter 417563 418562 0.999999 - . ID=CGI_10018250; scaffold1737 TRF Tandem_Repeat 419262 419293 64 + . . scaffold1737 GLEAN mRNA 419336 423066 0.999376 - . ID=CGI_10018251; scaffold1737 TRF Tandem_Repeat 422711 422769 118 + . . scaffold1737 GLEAN promoter 423067 424066 0.999376 - . ID=CGI_10018251; scaffold1737 GLEAN promoter 423980 424979 0.976973 + . ID=CGI_10018252; scaffold1737 GLEAN mRNA 424980 425591 0.976973 + . ID=CGI_10018252; scaffold1737 WUBlastX LINE_Jockey 427971 428066 25 + . . scaffold1737 WUBlastX LINE_CR1-L2 428332 428448 42 + . . scaffold1737 WUBlastX LINE_Jockey 428510 428605 30 + . . scaffold1737 WUBlastX LINE_CR1 428607 429425 85 + . . scaffold1737 WUBlastX LINE_CR1 428703 429398 160 + . . scaffold1737 TRF Tandem_Repeat 429570 429679 106 + . . scaffold1737 TRF Tandem_Repeat 431720 431860 201 + . . scaffold1737 GLEAN promoter 431970 432969 0.999661 + . ID=CGI_10018253; scaffold1737 GLEAN mRNA 432970 433806 0.999661 + . ID=CGI_10018253; scaffold1737 TRF Tandem_Repeat 434737 435022 379 + . . scaffold1737 TRF Tandem_Repeat 435294 435485 159 + . . scaffold1737 TRF Tandem_Repeat 435294 435448 184 + . . scaffold1737 GLEAN promoter 439832 440831 0.999676 + . ID=CGI_10018254; scaffold1737 GLEAN mRNA 440832 447452 0.999676 + . ID=CGI_10018254; scaffold1737 TRF Tandem_Repeat 441087 441111 50 + . . scaffold1737 TRF Tandem_Repeat 443650 445458 2075 + . . scaffold1737 GLEAN promoter 446854 447853 0.999999 + . ID=CGI_10018255; scaffold1737 GLEAN mRNA 447854 462520 0.999999 + . ID=CGI_10018255; scaffold1737 TRF Tandem_Repeat 450972 451154 141 + . . scaffold1737 TRF Tandem_Repeat 450972 451097 155 + . . scaffold1737 TRF Tandem_Repeat 451181 451330 147 + . . scaffold1737 TRF Tandem_Repeat 453625 453679 110 + . . scaffold1737 WUBlastX LINE_RTE-X 462111 462188 24 - . . scaffold1737 WUBlastX LINE_RTE-X 462151 462471 76 - . . scaffold1737 WUBlastX LINE_RTE-X 462205 462408 105 - . . scaffold1737 WUBlastX LINE_RTE-X 462907 463590 40 - . . scaffold1737 WUBlastX LINE_RTE-X 463126 463659 44 - . . scaffold1737 WUBlastX LINE_RTE-X 463129 463560 56 - . . scaffold1737 GLEAN mRNA 465811 530668 0.60401 - . ID=CGI_10018256; scaffold1737 TRF Tandem_Repeat 466560 466981 344 + . . scaffold1737 TRF Tandem_Repeat 480496 480708 237 + . . scaffold1737 TRF Tandem_Repeat 483016 483131 78 + . . scaffold1737 GLEAN promoter 485619 486618 0.999613 + . ID=CGI_10018257; scaffold1737 GLEAN mRNA 486619 487692 0.999613 + . ID=CGI_10018257; scaffold1737 TRF Tandem_Repeat 492166 492213 96 + . . scaffold1737 TRF Tandem_Repeat 492550 493031 910 + . . scaffold1737 TRF Tandem_Repeat 494229 494277 98 + . . scaffold1737 TRF Tandem_Repeat 497969 498555 915 + . . scaffold1737 TRF Tandem_Repeat 499083 500010 1404 + . . scaffold1737 TRF Tandem_Repeat 500930 501173 317 + . . scaffold1737 TRF Tandem_Repeat 503524 504749 1490 + . . scaffold1737 TRF Tandem_Repeat 503524 504749 1471 + . . scaffold1737 TRF Tandem_Repeat 510758 511550 1202 + . . scaffold1737 TRF Tandem_Repeat 512172 512385 428 + . . scaffold1737 GLEAN promoter 514027 515026 0.999999 + . ID=CGI_10018258; scaffold1737 GLEAN mRNA 515027 522691 0.999999 + . ID=CGI_10018258; scaffold1737 TRF Tandem_Repeat 517172 518397 1297 + . . scaffold1737 TRF Tandem_Repeat 518690 519883 1330 + . . scaffold1737 TRF Tandem_Repeat 522295 522517 437 + . . scaffold1737 TRF Tandem_Repeat 525423 525862 603 + . . scaffold1737 TRF Tandem_Repeat 525423 525862 605 + . . scaffold1737 TRF Tandem_Repeat 526891 527830 1302 + . . scaffold1737 GLEAN promoter 530669 531668 0.60401 - . ID=CGI_10018256; scaffold1737 GLEAN mRNA 532497 538181 1 - . ID=CGI_10018259; scaffold1737 GLEAN promoter 538182 539181 1 - . ID=CGI_10018259; scaffold1738 WUBlastX LTR_Gypsy 5130 5606 116 + . . scaffold1738 WUBlastX LTR_Gypsy 5217 5726 164 + . . scaffold1738 WUBlastX LTR_Gypsy 5936 6052 21 + . . scaffold1738 WUBlastX LTR_Gypsy 5972 6112 34 + . . scaffold1738 WUBlastX LTR_Gypsy 5996 6190 60 + . . scaffold1738 WUBlastX LTR_Gypsy 6148 8148 962 + . . scaffold1738 WUBlastX LTR_Gypsy 8150 9805 1071 + . . scaffold1738 WUBlastX LTR_Gypsy 8699 10156 341 + . . scaffold1738 WUBlastX LTR_Copia 10108 10257 28 + . . scaffold1738 WUBlastX DNA_Sola 13579 13992 128 + . . scaffold1738 WUBlastX DNA_Sola 13645 13983 182 + . . scaffold1738 TRF Tandem_Repeat 14168 14221 99 + . . scaffold1738 WUBlastX DNA_Sola 21322 21615 61 + . . scaffold1738 WUBlastX DNA_Sola 21322 21555 78 + . . scaffold1738 GLEAN promoter 26895 27894 0.991464 + . ID=CGI_10008967; scaffold1738 GLEAN mRNA 27895 31472 0.991464 + . ID=CGI_10008967; scaffold1738 WUBlastX LINE_CR1-L2 43412 44017 78 + . . scaffold1738 WUBlastX LINE_CR1-L2 43412 43636 124 + . . scaffold1738 TRF Tandem_Repeat 48236 48944 1240 + . . scaffold1738 TRF Tandem_Repeat 48949 48982 50 + . . scaffold1738 TRF Tandem_Repeat 48952 48995 70 + . . scaffold1738 TRF Tandem_Repeat 49437 50103 635 + . . scaffold1738 TRF Tandem_Repeat 49437 50091 777 + . . scaffold1738 TRF Tandem_Repeat 49437 50098 490 + . . scaffold1738 TRF Tandem_Repeat 50573 51021 519 + . . scaffold1738 TRF Tandem_Repeat 55141 55261 66 + . . scaffold1738 TRF Tandem_Repeat 55229 55384 97 + . . scaffold1738 TRF Tandem_Repeat 59110 59157 60 + . . scaffold1738 TRF Tandem_Repeat 59225 59277 52 + . . scaffold1738 GLEAN mRNA 68485 68796 0.999372 - . ID=CGI_10008968; scaffold1738 GLEAN promoter 68797 69796 0.999372 - . ID=CGI_10008968; scaffold1738 TRF Tandem_Repeat 72157 72201 90 + . . scaffold1738 TRF Tandem_Repeat 81337 81378 84 + . . scaffold1738 TRF Tandem_Repeat 84178 84476 239 + . . scaffold1738 TRF Tandem_Repeat 86966 87017 104 + . . scaffold1738 GLEAN promoter 90353 91352 0.747668 + . ID=CGI_10008969; scaffold1738 TRF Tandem_Repeat 91005 91058 108 + . . scaffold1738 GLEAN mRNA 91353 99852 0.747668 + . ID=CGI_10008969; scaffold1738 TRF Tandem_Repeat 93242 93284 86 + . . scaffold1738 TRF Tandem_Repeat 95307 95492 149 + . . scaffold1738 GLEAN promoter 100617 101616 0.999676 + . ID=CGI_10008970; scaffold1738 GLEAN mRNA 101617 114566 0.999676 + . ID=CGI_10008970; scaffold1738 WUBlastX LINE_L2 101617 102192 210 + . . scaffold1738 WUBlastX DNA_TcMar-Tc1 102794 103651 394 - . . scaffold1738 WUBlastX DNA_TcMar-Tc1 103657 103773 31 - . . scaffold1738 TRF Tandem_Repeat 112653 112686 68 + . . scaffold1738 GLEAN mRNA 113119 120987 0.889923 - . ID=CGI_10008971; scaffold1738 GLEAN promoter 120576 121575 0.966833 + . ID=CGI_10008972; scaffold1738 GLEAN promoter 120988 121987 0.889923 - . ID=CGI_10008971; scaffold1738 GLEAN mRNA 121576 136936 0.966833 + . ID=CGI_10008972; scaffold1738 TRF Tandem_Repeat 129166 129190 50 + . . scaffold1738 GLEAN mRNA 136733 139262 1 - . ID=CGI_10008973; scaffold1738 GLEAN promoter 139263 140262 1 - . ID=CGI_10008973; scaffold1738 GLEAN promoter 146423 147422 0.662219 + . ID=CGI_10008974; scaffold1738 GLEAN mRNA 147423 184757 0.662219 + . ID=CGI_10008974; scaffold1738 TRF Tandem_Repeat 167039 167088 100 + . . scaffold1738 TRF Tandem_Repeat 179978 180121 126 + . . scaffold1738 TRF Tandem_Repeat 180916 181027 163 + . . scaffold1738 TRF Tandem_Repeat 181204 181253 100 + . . scaffold1738 TRF Tandem_Repeat 181285 181336 104 + . . scaffold1738 WUBlastX DNA_TcMar-Marin 188508 188561 37 - . . scaffold1738 WUBlastX DNA_TcMar-Marin 189528 189788 54 - . . scaffold1738 WUBlastX DNA_TcMar-Marin 189534 189737 55 - . . scaffold1738 TRF Tandem_Repeat 190010 190279 461 + . . scaffold1738 TRF Tandem_Repeat 192883 192931 98 + . . scaffold1738 TRF Tandem_Repeat 196683 197909 1309 + . . scaffold1738 GLEAN promoter 202552 203551 0.444857 + . ID=CGI_10008975; scaffold1738 GLEAN mRNA 203552 204916 0.444857 + . ID=CGI_10008975; scaffold1738 TRF Tandem_Repeat 208986 209041 112 + . . scaffold1738 TRF Tandem_Repeat 215070 215125 112 + . . scaffold1739 GLEAN promoter 1 304 0.999676 + . ID=CGI_10002521; scaffold1739 GLEAN mRNA 305 17636 0.999676 + . ID=CGI_10002521; scaffold1739 GLEAN mRNA 10090 10338 0.618241 - . ID=CGI_10002522; scaffold1739 GLEAN promoter 10339 11338 0.618241 - . ID=CGI_10002522; scaffold1739 GLEAN promoter 21688 22687 0.352393 + . ID=CGI_10002523; scaffold1739 GLEAN mRNA 22688 30643 0.352393 + . ID=CGI_10002523; scaffold1739 GLEAN mRNA 30922 36133 0.880482 - . ID=CGI_10002524; scaffold1739 GLEAN promoter 36134 37133 0.880482 - . ID=CGI_10002524; scaffold1739 GLEAN promoter 45890 46889 1 + . ID=CGI_10002525; scaffold1739 GLEAN mRNA 46890 48100 1 + . ID=CGI_10002525; scaffold174 WUBlastX DNA_TcMar-Marin 4055 4285 72 + . . scaffold174 TRF Tandem_Repeat 39926 39968 68 + . . scaffold174 WUBlastX DNA_Sola 41061 41606 265 - . . scaffold174 WUBlastX DNA_Sola 41685 41771 25 - . . scaffold174 WUBlastX DNA_Sola 41751 42380 392 - . . scaffold174 WUBlastX DNA_Sola 41760 42596 297 - . . scaffold174 WUBlastX DNA_Sola 42541 42690 116 - . . scaffold174 TRF Tandem_Repeat 68978 69014 74 + . . scaffold174 GLEAN promoter 72729 73728 0.999949 + . ID=CGI_10007097; scaffold174 GLEAN mRNA 73729 81939 0.999949 + . ID=CGI_10007097; scaffold174 TRF Tandem_Repeat 76211 76266 112 + . . scaffold174 TRF Tandem_Repeat 76858 76891 52 + . . scaffold174 TRF Tandem_Repeat 80014 80061 96 + . . scaffold174 TRF Tandem_Repeat 85792 85862 142 + . . scaffold174 TRF Tandem_Repeat 92464 92525 124 + . . scaffold174 GLEAN promoter 94750 95749 0.999745 + . ID=CGI_10007098; scaffold174 GLEAN mRNA 95750 119756 0.999745 + . ID=CGI_10007098; scaffold174 TRF Tandem_Repeat 112970 113032 126 + . . scaffold174 TRF Tandem_Repeat 121565 121606 84 + . . scaffold174 TRF Tandem_Repeat 123258 123282 50 + . . scaffold174 TRF Tandem_Repeat 129634 129689 67 + . . scaffold174 TRF Tandem_Repeat 129635 129696 87 + . . scaffold174 TRF Tandem_Repeat 129643 129696 54 + . . scaffold174 TRF Tandem_Repeat 129720 130513 1160 + . . scaffold174 TRF Tandem_Repeat 142307 142343 74 + . . scaffold174 TRF Tandem_Repeat 145567 145672 185 + . . scaffold174 TRF Tandem_Repeat 148397 148969 443 + . . scaffold174 TRF Tandem_Repeat 151317 151420 83 + . . scaffold174 TRF Tandem_Repeat 151317 151687 198 + . . scaffold174 TRF Tandem_Repeat 151323 151687 152 + . . scaffold174 TRF Tandem_Repeat 151323 151621 167 + . . scaffold174 TRF Tandem_Repeat 151328 151540 108 + . . scaffold174 TRF Tandem_Repeat 151335 151471 139 + . . scaffold174 TRF Tandem_Repeat 151390 151486 72 + . . scaffold174 TRF Tandem_Repeat 151506 151855 367 + . . scaffold174 TRF Tandem_Repeat 151512 151855 155 + . . scaffold174 TRF Tandem_Repeat 151555 151855 386 + . . scaffold174 TRF Tandem_Repeat 151557 151855 190 + . . scaffold174 TRF Tandem_Repeat 160876 161139 325 + . . scaffold174 WUBlastX DNA_Maverick 161526 161960 54 + . . scaffold174 TRF Tandem_Repeat 164631 164676 92 + . . scaffold174 GLEAN promoter 164794 165793 1 + . ID=CGI_10007099; scaffold174 TRF Tandem_Repeat 164899 164976 54 + . . scaffold174 TRF Tandem_Repeat 165140 165345 306 + . . scaffold174 GLEAN mRNA 165794 168802 1 + . ID=CGI_10007099; scaffold1740 WUBlastX LINE_L1-Tx1 1 1005 430 - . . scaffold1740 WUBlastX LINE_L1-Tx1 929 1570 344 - . . scaffold1740 WUBlastX LINE_L1 2982 3092 28 - . . scaffold1740 WUBlastX LINE_L1 3004 3552 52 - . . scaffold1740 WUBlastX LINE_L1 3115 3675 89 - . . scaffold1740 WUBlastX LINE_L1-Tx1 3987 4514 55 + . . scaffold1740 WUBlastX LINE_L1-Tx1 4068 4619 153 + . . scaffold1740 WUBlastX LINE_L1-Tx1 4646 5167 139 + . . scaffold1740 WUBlastX LINE_L1-Tx1 4670 5299 116 + . . scaffold1740 TRF Tandem_Repeat 5429 5468 71 + . . scaffold1740 WUBlastX LINE_RTE-X 7989 8255 60 + . . scaffold1740 TRF Tandem_Repeat 16871 17111 356 + . . scaffold1740 TRF Tandem_Repeat 20180 20214 52 + . . scaffold1740 GLEAN mRNA 25950 33954 0.498319 - . ID=CGI_10011442; scaffold1740 TRF Tandem_Repeat 30710 30850 129 + . . scaffold1740 GLEAN promoter 33955 34954 0.498319 - . ID=CGI_10011442; scaffold1740 TRF Tandem_Repeat 40444 41689 1829 + . . scaffold1740 TRF Tandem_Repeat 42907 42976 96 + . . scaffold1740 TRF Tandem_Repeat 42910 42975 80 + . . scaffold1740 GLEAN mRNA 47863 57861 0.885028 - . ID=CGI_10011443; scaffold1740 WUBlastX LTR_Gypsy 51695 52180 123 + . . scaffold1740 GLEAN promoter 57862 58861 0.885028 - . ID=CGI_10011443; scaffold1740 GLEAN promoter 63786 64785 0.404568 + . ID=CGI_10011444; scaffold1740 GLEAN mRNA 64786 74894 0.404568 + . ID=CGI_10011444; scaffold1740 TRF Tandem_Repeat 78817 78858 84 + . . scaffold1740 TRF Tandem_Repeat 79707 79744 76 + . . scaffold1740 TRF Tandem_Repeat 82700 82774 150 + . . scaffold1740 TRF Tandem_Repeat 90320 90353 68 + . . scaffold1740 TRF Tandem_Repeat 94135 94162 56 + . . scaffold1740 TRF Tandem_Repeat 114220 114291 72 + . . scaffold1740 TRF Tandem_Repeat 114221 114300 96 + . . scaffold1740 WUBlastX LTR_Gypsy 116062 116568 30 + . . scaffold1740 WUBlastX LTR_Gypsy 116140 116994 290 + . . scaffold1740 WUBlastX LTR_Gypsy 116263 116931 438 + . . scaffold1740 WUBlastX LTR_Gypsy-Cigr 116269 117129 274 + . . scaffold1740 WUBlastX LINE_CR1-L2 118254 118487 34 - . . scaffold1740 WUBlastX LINE_CR1-L2 118305 118490 74 - . . scaffold1740 WUBlastX LINE_CR1-L2 119171 119278 29 - . . scaffold1740 WUBlastX LINE_CR1-L2 119198 119359 34 - . . scaffold1740 WUBlastX LINE_CR1-L2 119198 119284 35 - . . scaffold1740 TRF Tandem_Repeat 121472 121496 50 + . . scaffold1740 GLEAN mRNA 122955 125948 0.918213 - . ID=CGI_10011445; scaffold1740 GLEAN promoter 125949 126948 0.918213 - . ID=CGI_10011445; scaffold1740 WUBlastX LINE_L1 137506 137658 77 - . . scaffold1740 GLEAN mRNA 140043 141742 0.609179 - . ID=CGI_10011446; scaffold1740 GLEAN promoter 141743 142742 0.609179 - . ID=CGI_10011446; scaffold1740 TRF Tandem_Repeat 170058 170107 66 + . . scaffold1740 TRF Tandem_Repeat 172088 172226 111 + . . scaffold1740 TRF Tandem_Repeat 172088 172228 106 + . . scaffold1740 TRF Tandem_Repeat 175173 175295 104 + . . scaffold1740 TRF Tandem_Repeat 175173 175246 121 + . . scaffold1740 TRF Tandem_Repeat 175173 175302 145 + . . scaffold1740 TRF Tandem_Repeat 175236 175301 91 + . . scaffold1740 TRF Tandem_Repeat 175507 175567 95 + . . scaffold1740 TRF Tandem_Repeat 175567 175597 53 + . . scaffold1740 TRF Tandem_Repeat 175629 175933 110 + . . scaffold1740 TRF Tandem_Repeat 175660 175931 140 + . . scaffold1740 TRF Tandem_Repeat 176444 176485 84 + . . scaffold1740 GLEAN mRNA 184133 192570 0.957793 - . ID=CGI_10011447; scaffold1740 TRF Tandem_Repeat 185766 185815 100 + . . scaffold1740 GLEAN promoter 192571 193570 0.957793 - . ID=CGI_10011447; scaffold1740 TRF Tandem_Repeat 194537 194579 86 + . . scaffold1740 WUBlastX LTR_Ngaro 196403 197980 840 - . . scaffold1740 WUBlastX LTR_Ngaro 198247 198501 102 - . . scaffold1740 WUBlastX LTR_Ngaro 198247 198561 73 - . . scaffold1740 GLEAN mRNA 199024 206391 0.999676 - . ID=CGI_10011448; scaffold1740 GLEAN promoter 206392 207391 0.999676 - . ID=CGI_10011448; scaffold1740 GLEAN mRNA 208281 211238 0.866192 - . ID=CGI_10011449; scaffold1740 WUBlastX DNA_Sola 208365 208850 33 - . . scaffold1740 WUBlastX DNA_Sola 209023 209190 74 - . . scaffold1740 WUBlastX DNA_Sola 209811 210110 22 - . . scaffold1740 GLEAN promoter 211239 212238 0.866192 - . ID=CGI_10011449; scaffold1740 WUBlastX DNA_TcMar-Fot1 219922 220470 217 + . . scaffold1740 WUBlastX LTR_Pao 223932 224120 130 - . . scaffold1740 WUBlastX LTR_Pao 223967 224323 184 - . . scaffold1740 WUBlastX LTR_Pao 224120 224482 183 - . . scaffold1740 WUBlastX LTR_Pao 224123 224329 192 - . . scaffold1740 WUBlastX LTR_Pao 224664 224849 62 - . . scaffold1740 WUBlastX LINE_L1-Tx1 236781 237002 47 - . . scaffold1740 GLEAN promoter 246855 247854 0.985926 + . ID=CGI_10011450; scaffold1740 GLEAN mRNA 247855 255968 0.985926 + . ID=CGI_10011450; scaffold1740 WUBlastX DNA_NOF? 251159 251458 71 - . . scaffold1740 WUBlastX DNA_TcMar-Tc1 256977 257477 82 + . . scaffold1740 WUBlastX DNA_TcMar-Tc1 257426 257974 215 + . . scaffold1740 WUBlastX DNA_TcMar-Tc1 257519 257974 235 + . . scaffold1740 TRF Tandem_Repeat 261040 261075 72 + . . scaffold1740 WUBlastX DNA_hAT-Tip100 266872 267192 60 - . . scaffold1740 WUBlastX DNA_hAT-Tip100 267165 267584 149 - . . scaffold1740 WUBlastX DNA_hAT-Tip100 267560 267823 83 - . . scaffold1740 WUBlastX DNA_hAT-Tip100 267934 268161 30 - . . scaffold1740 TRF Tandem_Repeat 273129 273177 98 + . . scaffold1740 GLEAN mRNA 276995 278164 0.59015 - . ID=CGI_10011452; scaffold1740 GLEAN promoter 278165 279164 0.59015 - . ID=CGI_10011452; scaffold1740 GLEAN promoter 282927 283926 0.618157 + . ID=CGI_10011453; scaffold1740 GLEAN mRNA 283927 284352 0.618157 + . ID=CGI_10011453; scaffold1740 TRF Tandem_Repeat 284892 285095 286 + . . scaffold1741 WUBlastX DNA_Maverick 17526 17720 48 - . . scaffold1741 WUBlastX RC_Helitron 19594 24891 3183 - . . scaffold1741 WUBlastX RC_Helitron 24727 25635 44 - . . scaffold1741 TRF Tandem_Repeat 34853 34889 74 + . . scaffold1741 TRF Tandem_Repeat 37653 37734 94 + . . scaffold1741 WUBlastX DNA_IS4EU 47672 48307 211 - . . scaffold1741 WUBlastX DNA_IS4EU 48555 48782 35 - . . scaffold1741 WUBlastX DNA_IS4EU 48636 48782 95 - . . scaffold1741 WUBlastX LINE_Penelope 56210 56539 86 + . . scaffold1741 WUBlastX LINE_Penelope 56505 56615 25 + . . scaffold1741 WUBlastX DNA_Merlin 61290 61982 359 - . . scaffold1741 TRF Tandem_Repeat 78351 78605 456 + . . scaffold1741 GLEAN mRNA 80415 81410 0.852961 - . ID=CGI_10024022; scaffold1741 GLEAN promoter 81411 82410 0.852961 - . ID=CGI_10024022; scaffold1741 WUBlastX DNA_En-Spm 89048 90094 95 + . . scaffold1741 WUBlastX DNA_En-Spm 89285 90691 353 + . . scaffold1741 WUBlastX DNA_En-Spm 89744 90691 378 + . . scaffold1741 WUBlastX DNA_En-Spm 90688 90888 85 + . . scaffold1741 WUBlastX DNA_En-Spm 90697 90960 27 + . . scaffold1741 TRF Tandem_Repeat 93130 93287 280 + . . scaffold1741 TRF Tandem_Repeat 94192 94712 780 + . . scaffold1741 TRF Tandem_Repeat 95835 95863 58 + . . scaffold1741 TRF Tandem_Repeat 104382 104436 74 + . . scaffold1741 TRF Tandem_Repeat 104383 104436 90 + . . scaffold1741 GLEAN mRNA 109157 119785 0.998974 - . ID=CGI_10024023; scaffold1741 TRF Tandem_Repeat 109253 110077 1089 + . . scaffold1741 TRF Tandem_Repeat 112319 112383 62 + . . scaffold1741 GLEAN promoter 119786 120785 0.998974 - . ID=CGI_10024023; scaffold1741 WUBlastX LINE_Penelope 123968 124459 129 + . . scaffold1741 TRF Tandem_Repeat 135614 135767 191 + . . scaffold1741 WUBlastX DNA_hAT-Tip100? 137307 137564 48 + . . scaffold1741 WUBlastX DNA_hAT-Tip100 137403 137642 43 + . . scaffold1741 GLEAN promoter 138496 139495 0.999947 + . ID=CGI_10024024; scaffold1741 GLEAN mRNA 139496 140209 0.999947 + . ID=CGI_10024024; scaffold1741 WUBlastX LTR_ERV1 140572 140700 29 + . . scaffold1741 WUBlastX LTR_Gypsy 140614 142515 1025 + . . scaffold1741 WUBlastX LTR_Gypsy-Cigr 140938 142515 1028 + . . scaffold1741 WUBlastX LTR_Gypsy 142420 142533 31 + . . scaffold1741 GLEAN promoter 143116 144115 0.999285 + . ID=CGI_10024025; scaffold1741 WUBlastX LTR_Gypsy 144110 144502 78 + . . scaffold1741 WUBlastX LTR_Gypsy 144113 144352 107 + . . scaffold1741 GLEAN mRNA 144116 145129 0.999285 + . ID=CGI_10024025; scaffold1741 WUBlastX LTR_Pao 144653 144787 25 + . . scaffold1741 WUBlastX LINE_Penelope 146349 146810 48 + . . scaffold1741 TRF Tandem_Repeat 176286 176425 199 + . . scaffold1741 TRF Tandem_Repeat 178077 178112 63 + . . scaffold1741 TRF Tandem_Repeat 182819 182867 98 + . . scaffold1741 GLEAN promoter 183711 184710 0.999966 + . ID=CGI_10024026; scaffold1741 GLEAN mRNA 184711 199533 0.999966 + . ID=CGI_10024026; scaffold1741 TRF Tandem_Repeat 186465 186546 125 + . . scaffold1741 TRF Tandem_Repeat 187212 187332 127 + . . scaffold1741 TRF Tandem_Repeat 191340 191373 59 + . . scaffold1741 TRF Tandem_Repeat 193811 193915 97 + . . scaffold1741 TRF Tandem_Repeat 195233 195267 70 + . . scaffold1741 TRF Tandem_Repeat 197349 197421 92 + . . scaffold1741 TRF Tandem_Repeat 203671 203707 74 + . . scaffold1741 TRF Tandem_Repeat 205390 205429 80 + . . scaffold1741 TRF Tandem_Repeat 206954 206995 77 + . . scaffold1741 GLEAN mRNA 208367 209812 0.963338 - . ID=CGI_10024027; scaffold1741 GLEAN promoter 209813 210812 0.963338 - . ID=CGI_10024027; scaffold1741 GLEAN mRNA 211476 218683 0.644659 - . ID=CGI_10024028; scaffold1741 TRF Tandem_Repeat 213943 213990 96 + . . scaffold1741 TRF Tandem_Repeat 214863 214907 90 + . . scaffold1741 GLEAN promoter 218684 219683 0.644659 - . ID=CGI_10024028; scaffold1741 TRF Tandem_Repeat 219303 219362 120 + . . scaffold1741 TRF Tandem_Repeat 219487 219541 110 + . . scaffold1741 TRF Tandem_Repeat 222666 222718 106 + . . scaffold1741 TRF Tandem_Repeat 222770 222814 83 + . . scaffold1741 TRF Tandem_Repeat 222829 222874 58 + . . scaffold1741 GLEAN promoter 226050 227049 0.969428 + . ID=CGI_10024029; scaffold1741 TRF Tandem_Repeat 226191 226230 73 + . . scaffold1741 GLEAN mRNA 227050 232233 0.969428 + . ID=CGI_10024029; scaffold1741 TRF Tandem_Repeat 227427 227478 104 + . . scaffold1741 TRF Tandem_Repeat 228994 229032 78 + . . scaffold1741 TRF Tandem_Repeat 229415 229476 115 + . . scaffold1741 GLEAN mRNA 238913 241085 0.593391 - . ID=CGI_10024030; scaffold1741 GLEAN promoter 241086 242085 0.593391 - . ID=CGI_10024030; scaffold1741 GLEAN promoter 243502 244501 0.999997 + . ID=CGI_10024031; scaffold1741 GLEAN mRNA 244502 250805 0.999997 + . ID=CGI_10024031; scaffold1741 TRF Tandem_Repeat 244642 244736 124 + . . scaffold1741 TRF Tandem_Repeat 245852 245917 123 + . . scaffold1741 GLEAN promoter 250284 251283 0.992509 + . ID=CGI_10024032; scaffold1741 GLEAN mRNA 251284 254526 0.992509 + . ID=CGI_10024032; scaffold1741 TRF Tandem_Repeat 252844 252887 52 + . . scaffold1741 GLEAN promoter 255106 256105 0.999999 + . ID=CGI_10024033; scaffold1741 GLEAN mRNA 256106 262526 0.999999 + . ID=CGI_10024033; scaffold1741 TRF Tandem_Repeat 257408 257486 68 + . . scaffold1741 TRF Tandem_Repeat 258890 258981 139 + . . scaffold1741 TRF Tandem_Repeat 258985 259023 69 + . . scaffold1741 TRF Tandem_Repeat 277671 277720 100 + . . scaffold1741 TRF Tandem_Repeat 282479 282545 134 + . . scaffold1741 TRF Tandem_Repeat 282746 282933 223 + . . scaffold1741 TRF Tandem_Repeat 282746 282933 229 + . . scaffold1741 TRF Tandem_Repeat 315747 315772 52 + . . scaffold1741 TRF Tandem_Repeat 321938 321999 124 + . . scaffold1741 TRF Tandem_Repeat 327776 327922 116 + . . scaffold1741 TRF Tandem_Repeat 332362 332414 79 + . . scaffold1741 TRF Tandem_Repeat 334327 334390 92 + . . scaffold1741 TRF Tandem_Repeat 335579 335629 102 + . . scaffold1741 TRF Tandem_Repeat 335811 335845 70 + . . scaffold1741 TRF Tandem_Repeat 335843 335882 80 + . . scaffold1741 TRF Tandem_Repeat 336377 336429 79 + . . scaffold1741 TRF Tandem_Repeat 336472 336575 127 + . . scaffold1741 GLEAN promoter 337497 338496 0.379004 + . ID=CGI_10024034; scaffold1741 GLEAN mRNA 338497 338895 0.379004 + . ID=CGI_10024034; scaffold1741 GLEAN mRNA 342591 342830 0.593391 - . ID=CGI_10024035; scaffold1741 GLEAN promoter 342831 343830 0.593391 - . ID=CGI_10024035; scaffold1741 TRF Tandem_Repeat 347251 347322 137 + . . scaffold1741 WUBlastX LINE_CR1-L2 350236 350385 36 - . . scaffold1741 WUBlastX LINE_CR1-L2 350299 350385 51 - . . scaffold1741 WUBlastX LINE_L2 350369 350545 81 - . . scaffold1741 TRF Tandem_Repeat 352429 352478 100 + . . scaffold1741 TRF Tandem_Repeat 358265 358374 105 + . . scaffold1741 TRF Tandem_Repeat 363584 363648 130 + . . scaffold1741 GLEAN promoter 366490 367489 0.453716 + . ID=CGI_10024036; scaffold1741 GLEAN mRNA 367490 389312 0.453716 + . ID=CGI_10024036; scaffold1741 TRF Tandem_Repeat 370644 370716 146 + . . scaffold1741 TRF Tandem_Repeat 383668 383720 106 + . . scaffold1741 TRF Tandem_Repeat 384453 384508 112 + . . scaffold1741 TRF Tandem_Repeat 388730 388773 61 + . . scaffold1741 GLEAN promoter 392043 393042 0.990718 + . ID=CGI_10024037; scaffold1741 GLEAN mRNA 393043 404464 0.990718 + . ID=CGI_10024037; scaffold1741 TRF Tandem_Repeat 393651 394890 1545 + . . scaffold1741 TRF Tandem_Repeat 401126 401183 116 + . . scaffold1741 GLEAN mRNA 405700 409055 0.999351 - . ID=CGI_10024038; scaffold1741 TRF Tandem_Repeat 407828 407866 78 + . . scaffold1741 GLEAN promoter 409056 410055 0.999351 - . ID=CGI_10024038; scaffold1741 TRF Tandem_Repeat 413867 414468 347 + . . scaffold1741 TRF Tandem_Repeat 414641 414751 179 + . . scaffold1741 TRF Tandem_Repeat 424556 424657 70 + . . scaffold1741 TRF Tandem_Repeat 426014 426064 77 + . . scaffold1741 TRF Tandem_Repeat 426450 426500 102 + . . scaffold1741 TRF Tandem_Repeat 429375 429435 104 + . . scaffold1741 GLEAN mRNA 429550 454781 0.911374 - . ID=CGI_10024039; scaffold1741 GLEAN promoter 454782 455781 0.911374 - . ID=CGI_10024039; scaffold1741 GLEAN mRNA 455075 459974 1 - . ID=CGI_10024040; scaffold1741 TRF Tandem_Repeat 455786 457199 1264 + . . scaffold1741 TRF Tandem_Repeat 456386 457199 754 + . . scaffold1741 GLEAN promoter 459975 460974 1 - . ID=CGI_10024040; scaffold1741 GLEAN mRNA 460279 481889 0.400236 - . ID=CGI_10024041; scaffold1741 TRF Tandem_Repeat 475793 475929 184 + . . scaffold1741 TRF Tandem_Repeat 476157 476278 118 + . . scaffold1741 TRF Tandem_Repeat 476548 476639 103 + . . scaffold1741 TRF Tandem_Repeat 478743 478782 80 + . . scaffold1741 GLEAN promoter 481890 482889 0.400236 - . ID=CGI_10024041; scaffold1741 TRF Tandem_Repeat 483984 484039 55 + . . scaffold1741 TRF Tandem_Repeat 484119 484179 54 + . . scaffold1741 TRF Tandem_Repeat 485350 485406 114 + . . scaffold1741 GLEAN mRNA 498090 498407 0.81242 - . ID=CGI_10024042; scaffold1741 GLEAN promoter 498408 499407 0.81242 - . ID=CGI_10024042; scaffold1741 TRF Tandem_Repeat 507572 508611 1290 + . . scaffold1741 TRF Tandem_Repeat 508390 508646 269 + . . scaffold1741 GLEAN mRNA 509433 517570 0.999949 - . ID=CGI_10024043; scaffold1741 TRF Tandem_Repeat 512253 513322 1525 + . . scaffold1741 TRF Tandem_Repeat 515194 515241 96 + . . scaffold1741 TRF Tandem_Repeat 517241 517322 155 + . . scaffold1741 GLEAN promoter 517571 518570 0.999949 - . ID=CGI_10024043; scaffold1741 TRF Tandem_Repeat 517846 517887 66 + . . scaffold1741 TRF Tandem_Repeat 528214 528238 50 + . . scaffold1741 GLEAN promoter 528998 529997 0.999288 + . ID=CGI_10024044; scaffold1741 GLEAN mRNA 529998 556087 0.999288 + . ID=CGI_10024044; scaffold1741 TRF Tandem_Repeat 531534 531770 325 + . . scaffold1741 TRF Tandem_Repeat 536404 536543 121 + . . scaffold1741 TRF Tandem_Repeat 537021 537112 112 + . . scaffold1741 TRF Tandem_Repeat 541034 541289 379 + . . scaffold1741 TRF Tandem_Repeat 548762 548788 54 + . . scaffold1741 TRF Tandem_Repeat 556474 556498 50 + . . scaffold1741 TRF Tandem_Repeat 556498 556539 77 + . . scaffold1741 TRF Tandem_Repeat 561801 562096 264 + . . scaffold1741 TRF Tandem_Repeat 562024 562971 1221 + . . scaffold1741 GLEAN promoter 563549 564548 0.763619 + . ID=CGI_10024045; scaffold1741 GLEAN mRNA 564549 570497 0.763619 + . ID=CGI_10024045; scaffold1741 TRF Tandem_Repeat 566205 566244 80 + . . scaffold1741 TRF Tandem_Repeat 566714 566877 328 + . . scaffold1741 GLEAN promoter 569862 570861 0.858073 + . ID=CGI_10024046; scaffold1741 GLEAN mRNA 570862 573332 0.858073 + . ID=CGI_10024046; scaffold1741 GLEAN promoter 574954 575953 0.201236 + . ID=CGI_10024047; scaffold1741 GLEAN mRNA 575954 614216 0.201236 + . ID=CGI_10024047; scaffold1741 TRF Tandem_Repeat 577247 577341 144 + . . scaffold1741 TRF Tandem_Repeat 577247 577343 160 + . . scaffold1741 TRF Tandem_Repeat 578070 578229 184 + . . scaffold1741 TRF Tandem_Repeat 578072 578229 179 + . . scaffold1741 WUBlastX RC_Helitron 587713 587763 22 + . . scaffold1741 TRF Tandem_Repeat 605687 605767 74 + . . scaffold1741 TRF Tandem_Repeat 605687 605767 74 + . . scaffold1741 WUBlastX DNA_IS4EU 609859 610026 29 + . . scaffold1741 TRF Tandem_Repeat 617049 617086 76 + . . scaffold1741 GLEAN promoter 620047 621046 1 + . ID=CGI_10024048; scaffold1741 GLEAN mRNA 621047 625412 1 + . ID=CGI_10024048; scaffold1741 TRF Tandem_Repeat 646727 648297 2343 + . . scaffold1741 TRF Tandem_Repeat 656743 656779 65 + . . scaffold1741 GLEAN promoter 669065 670064 0.535305 + . ID=CGI_10024049; scaffold1741 GLEAN mRNA 670065 695183 0.535305 + . ID=CGI_10024049; scaffold1741 TRF Tandem_Repeat 699504 699568 105 + . . scaffold1741 TRF Tandem_Repeat 700615 700686 144 + . . scaffold1741 TRF Tandem_Repeat 744328 744358 62 + . . scaffold1741 TRF Tandem_Repeat 744454 744486 66 + . . scaffold1741 TRF Tandem_Repeat 744840 744898 118 + . . scaffold1741 TRF Tandem_Repeat 747996 748113 50 + . . scaffold1741 TRF Tandem_Repeat 748057 748133 57 + . . scaffold1741 WUBlastX LINE_L1-Tx1 754033 754389 51 + . . scaffold1741 WUBlastX LINE_L1-Tx1 754087 754389 135 + . . scaffold1741 WUBlastX LINE_L1-Tx1 754147 754440 112 + . . scaffold1741 WUBlastX LINE_L1-Tx1 754485 755039 73 + . . scaffold1741 WUBlastX LINE_L1 755034 755174 31 + . . scaffold1741 WUBlastX LINE_L1 755195 755476 57 + . . scaffold1741 WUBlastX LINE_L1-Tx1 755475 755654 24 + . . scaffold1741 WUBlastX DNA_PiggyBac 756953 757288 36 + . . scaffold1741 WUBlastX DNA_PiggyBac 757193 757315 76 + . . scaffold1741 TRF Tandem_Repeat 772382 772409 56 + . . scaffold1741 GLEAN promoter 786608 787607 0.999672 + . ID=CGI_10024051; scaffold1741 TRF Tandem_Repeat 787483 787530 96 + . . scaffold1741 GLEAN mRNA 787608 803177 0.999672 + . ID=CGI_10024051; scaffold1741 TRF Tandem_Repeat 788604 788904 449 + . . scaffold1741 TRF Tandem_Repeat 795507 795674 264 + . . scaffold1741 GLEAN mRNA 804296 818884 1 - . ID=CGI_10024052; scaffold1741 TRF Tandem_Repeat 805806 805839 68 + . . scaffold1741 TRF Tandem_Repeat 809023 809063 64 + . . scaffold1741 TRF Tandem_Repeat 809198 809609 531 + . . scaffold1741 TRF Tandem_Repeat 809230 809662 473 + . . scaffold1741 WUBlastX DNA_Kolobok 812731 812898 84 + . . scaffold1741 WUBlastX DNA_Kolobok 813300 813458 98 - . . scaffold1741 WUBlastX DNA_Kolobok 813354 813485 28 - . . scaffold1741 WUBlastX DNA_Kolobok 813537 813716 77 - . . scaffold1741 WUBlastX DNA_Kolobok 813748 814041 104 - . . scaffold1741 WUBlastX DNA_Kolobok 814123 814320 117 - . . scaffold1741 WUBlastX DNA_Kolobok 814132 814386 51 - . . scaffold1741 WUBlastX DNA_Kolobok 814416 815336 230 - . . scaffold1741 WUBlastX DNA_P 815598 815912 82 - . . scaffold1741 WUBlastX DNA_IS4EU 815715 815915 91 - . . scaffold1741 TRF Tandem_Repeat 817607 817811 331 + . . scaffold1741 TRF Tandem_Repeat 817617 817743 105 + . . scaffold1741 TRF Tandem_Repeat 818282 818464 133 + . . scaffold1741 TRF Tandem_Repeat 818330 818454 94 + . . scaffold1741 GLEAN promoter 818885 819884 1 - . ID=CGI_10024052; scaffold1741 GLEAN mRNA 820796 825594 1 - . ID=CGI_10024053; scaffold1741 GLEAN promoter 825595 826594 1 - . ID=CGI_10024053; scaffold1741 GLEAN mRNA 828645 830552 1 - . ID=CGI_10024054; scaffold1741 TRF Tandem_Repeat 830109 830198 63 + . . scaffold1741 GLEAN promoter 830553 831552 1 - . ID=CGI_10024054; scaffold1741 GLEAN mRNA 832278 833665 0.999376 - . ID=CGI_10024055; scaffold1741 GLEAN promoter 833666 834665 0.999376 - . ID=CGI_10024055; scaffold1741 GLEAN mRNA 834940 853940 0.990852 - . ID=CGI_10024056; scaffold1741 TRF Tandem_Repeat 835690 835740 102 + . . scaffold1741 TRF Tandem_Repeat 837379 837553 129 + . . scaffold1741 TRF Tandem_Repeat 837396 837553 138 + . . scaffold1741 GLEAN promoter 837737 838736 0.789234 + . ID=CGI_10024057; scaffold1741 GLEAN mRNA 838737 859997 0.789234 + . ID=CGI_10024057; scaffold1741 GLEAN promoter 853941 854940 0.990852 - . ID=CGI_10024056; scaffold1741 TRF Tandem_Repeat 858332 858382 102 + . . scaffold1741 GLEAN promoter 889686 890685 0.999501 + . ID=CGI_10024058; scaffold1741 GLEAN mRNA 890686 896517 0.999501 + . ID=CGI_10024058; scaffold1741 TRF Tandem_Repeat 893501 893813 174 + . . scaffold1741 TRF Tandem_Repeat 893501 893810 195 + . . scaffold1741 TRF Tandem_Repeat 893501 893813 197 + . . scaffold1741 TRF Tandem_Repeat 893949 894069 84 + . . scaffold1742 GLEAN promoter 1 176 0.999372 + . ID=CGI_10010928; scaffold1742 GLEAN mRNA 177 377 0.999372 + . ID=CGI_10010928; scaffold1742 GLEAN promoter 5151 6150 0.835773 + . ID=CGI_10010929; scaffold1742 GLEAN mRNA 6151 14747 0.835773 + . ID=CGI_10010929; scaffold1742 TRF Tandem_Repeat 9856 9886 62 + . . scaffold1742 GLEAN promoter 14057 15056 0.999949 + . ID=CGI_10010930; scaffold1742 GLEAN mRNA 15057 24053 0.999949 + . ID=CGI_10010930; scaffold1742 TRF Tandem_Repeat 17889 17927 78 + . . scaffold1742 GLEAN mRNA 26304 41919 0.627276 - . ID=CGI_10010931; scaffold1742 TRF Tandem_Repeat 27708 27741 61 + . . scaffold1742 GLEAN promoter 41920 42919 0.627276 - . ID=CGI_10010931; scaffold1742 TRF Tandem_Repeat 52871 52931 54 + . . scaffold1742 TRF Tandem_Repeat 55416 55467 104 + . . scaffold1742 GLEAN promoter 61364 62363 0.734241 + . ID=CGI_10010932; scaffold1742 GLEAN mRNA 62364 74465 0.734241 + . ID=CGI_10010932; scaffold1742 GLEAN mRNA 84462 88852 0.702385 - . ID=CGI_10010933; scaffold1742 TRF Tandem_Repeat 86359 86431 137 + . . scaffold1742 TRF Tandem_Repeat 87907 87950 88 + . . scaffold1742 GLEAN promoter 88853 89852 0.702385 - . ID=CGI_10010933; scaffold1742 TRF Tandem_Repeat 103758 103922 174 + . . scaffold1742 TRF Tandem_Repeat 107865 107935 142 + . . scaffold1742 TRF Tandem_Repeat 119750 119880 208 + . . scaffold1742 TRF Tandem_Repeat 121513 121888 439 + . . scaffold1742 TRF Tandem_Repeat 125612 125674 117 + . . scaffold1742 TRF Tandem_Repeat 127183 127314 93 + . . scaffold1742 TRF Tandem_Repeat 127202 127274 67 + . . scaffold1742 TRF Tandem_Repeat 127204 127319 103 + . . scaffold1742 TRF Tandem_Repeat 127364 127402 78 + . . scaffold1742 TRF Tandem_Repeat 136736 136768 66 + . . scaffold1742 GLEAN mRNA 139017 145553 0.542354 - . ID=CGI_10010934; scaffold1742 WUBlastX DNA_Harbinger 140235 140597 62 - . . scaffold1742 WUBlastX DNA_Harbinger 140366 141202 79 - . . scaffold1742 WUBlastX DNA_Harbinger 140734 141108 127 - . . scaffold1742 GLEAN promoter 145554 146553 0.542354 - . ID=CGI_10010934; scaffold1742 GLEAN mRNA 147574 157164 0.280853 - . ID=CGI_10010935; scaffold1742 GLEAN promoter 157165 158164 0.280853 - . ID=CGI_10010935; scaffold1742 TRF Tandem_Repeat 162534 162597 128 + . . scaffold1742 GLEAN promoter 164400 165399 1 + . ID=CGI_10010936; scaffold1742 GLEAN mRNA 165400 170345 1 + . ID=CGI_10010936; scaffold1742 GLEAN promoter 171513 172512 0.444033 + . ID=CGI_10010937; scaffold1742 GLEAN mRNA 172513 177090 0.444033 + . ID=CGI_10010937; scaffold1742 TRF Tandem_Repeat 175353 175451 144 + . . scaffold1742 GLEAN promoter 177984 178983 0.583321 + . ID=CGI_10010938; scaffold1742 GLEAN promoter 178715 179714 0.750006 + . ID=CGI_10010939; scaffold1742 GLEAN mRNA 178984 179406 0.583321 + . ID=CGI_10010938; scaffold1742 GLEAN mRNA 179715 180572 0.750006 + . ID=CGI_10010939; scaffold1742 TRF Tandem_Repeat 181554 181606 106 + . . scaffold1742 TRF Tandem_Repeat 187594 187637 52 + . . scaffold1742 TRF Tandem_Repeat 189478 189669 215 + . . scaffold1742 GLEAN promoter 191942 192941 0.674548 + . ID=CGI_10010940; scaffold1742 GLEAN mRNA 192942 207587 0.674548 + . ID=CGI_10010940; scaffold1742 TRF Tandem_Repeat 193126 193410 419 + . . scaffold1742 TRF Tandem_Repeat 200115 200314 382 + . . scaffold1742 TRF Tandem_Repeat 206893 207104 306 + . . scaffold1742 TRF Tandem_Repeat 211604 211705 116 + . . scaffold1742 TRF Tandem_Repeat 211712 211812 152 + . . scaffold1742 TRF Tandem_Repeat 211712 212238 280 + . . scaffold1742 TRF Tandem_Repeat 211988 212179 136 + . . scaffold1742 TRF Tandem_Repeat 215535 215962 317 + . . scaffold1742 TRF Tandem_Repeat 215535 215957 537 + . . scaffold1742 TRF Tandem_Repeat 215535 215962 486 + . . scaffold1742 TRF Tandem_Repeat 216336 216977 347 + . . scaffold1742 TRF Tandem_Repeat 216411 217001 399 + . . scaffold1742 TRF Tandem_Repeat 216624 216976 199 + . . scaffold1742 TRF Tandem_Repeat 219422 219479 98 + . . scaffold1742 GLEAN promoter 220618 221617 0.556646 + . ID=CGI_10010941; scaffold1742 GLEAN mRNA 221618 231795 0.556646 + . ID=CGI_10010941; scaffold1742 TRF Tandem_Repeat 222830 222885 105 + . . scaffold1742 TRF Tandem_Repeat 229918 229996 149 + . . scaffold1742 GLEAN promoter 231006 232005 0.999372 + . ID=CGI_10010942; scaffold1742 GLEAN mRNA 232006 232272 0.999372 + . ID=CGI_10010942; scaffold1742 GLEAN mRNA 235226 237501 0.999375 - . ID=CGI_10010943; scaffold1742 GLEAN promoter 237502 238501 0.999375 - . ID=CGI_10010943; scaffold1742 TRF Tandem_Repeat 246348 246409 115 + . . scaffold1742 WUBlastX LTR_Copia 247244 248689 855 - . . scaffold1742 WUBlastX LTR_Copia 248291 248800 113 - . . scaffold1742 WUBlastX LTR_Copia 249057 249140 33 - . . scaffold1742 WUBlastX LTR_Copia 249074 250054 639 - . . scaffold1742 WUBlastX LTR_Copia 250068 251135 508 - . . scaffold1742 WUBlastX LTR_Copia 252162 252491 142 - . . scaffold1742 GLEAN mRNA 253825 255954 0.734544 - . ID=CGI_10010944; scaffold1742 GLEAN promoter 255955 256954 0.734544 - . ID=CGI_10010944; scaffold1742 TRF Tandem_Repeat 256047 256102 87 + . . scaffold1742 GLEAN mRNA 259203 261301 0.995363 - . ID=CGI_10010945; scaffold1742 GLEAN promoter 261302 262301 0.995363 - . ID=CGI_10010945; scaffold1742 GLEAN mRNA 262607 264701 0.995363 - . ID=CGI_10010946; scaffold1742 GLEAN promoter 264702 265701 0.995363 - . ID=CGI_10010946; scaffold1742 GLEAN mRNA 265314 267975 1 - . ID=CGI_10010947; scaffold1742 TRF Tandem_Repeat 265839 265912 103 + . . scaffold1742 GLEAN promoter 267695 268694 1 + . ID=CGI_10010948; scaffold1742 GLEAN promoter 267976 268975 1 - . ID=CGI_10010947; scaffold1742 GLEAN mRNA 268695 270630 1 + . ID=CGI_10010948; scaffold1742 GLEAN promoter 272177 273176 1 + . ID=CGI_10010949; scaffold1742 GLEAN mRNA 273177 277411 1 + . ID=CGI_10010949; scaffold1742 TRF Tandem_Repeat 279050 279483 475 + . . scaffold1743 TRF Tandem_Repeat 31 62 55 + . . scaffold1743 WUBlastX DNA_TcMar-Marin 2346 2768 169 + . . scaffold1743 WUBlastX DNA_TcMar-Marin 2759 2983 159 + . . scaffold1743 WUBlastX DNA_TcMar-Marin 3174 3503 170 + . . scaffold1743 WUBlastX DNA_TcMar-Marin 3192 3560 152 + . . scaffold1743 TRF Tandem_Repeat 4777 4849 146 + . . scaffold1743 TRF Tandem_Repeat 6978 7011 68 + . . scaffold1743 TRF Tandem_Repeat 13620 13667 60 + . . scaffold1743 TRF Tandem_Repeat 13632 13675 70 + . . scaffold1743 TRF Tandem_Repeat 20892 20939 96 + . . scaffold1743 TRF Tandem_Repeat 35237 35361 214 + . . scaffold1743 GLEAN promoter 45556 46555 0.501263 + . ID=CGI_10011653; scaffold1743 GLEAN mRNA 46556 59343 0.501263 + . ID=CGI_10011653; scaffold1743 WUBlastX LINE_RTE-X 49985 50233 59 + . . scaffold1743 WUBlastX LINE_RTE-X 50057 50242 66 + . . scaffold1743 GLEAN promoter 59684 60683 0.999158 + . ID=CGI_10011654; scaffold1743 GLEAN mRNA 60684 78575 0.999158 + . ID=CGI_10011654; scaffold1743 TRF Tandem_Repeat 79056 79370 402 + . . scaffold1743 WUBlastX DNA_TcMar-Tc1 86712 87743 408 - . . scaffold1743 WUBlastX DNA_Harbinger 88470 88952 383 + . . scaffold1743 TRF Tandem_Repeat 88997 89027 62 + . . scaffold1743 WUBlastX DNA_Harbinger 89320 89430 73 + . . scaffold1743 WUBlastX DNA_Harbinger 89628 89918 119 - . . scaffold1743 WUBlastX DNA_Harbinger 89908 90027 39 - . . scaffold1743 TRF Tandem_Repeat 96253 97421 1668 + . . scaffold1743 WUBlastX LINE_L1 97466 97864 90 + . . scaffold1743 WUBlastX LINE_L1-Tx1 97466 97744 200 + . . scaffold1743 WUBlastX LINE_L1 98323 98445 30 + . . scaffold1743 WUBlastX LINE_L1-Tx1 98377 99672 433 + . . scaffold1743 WUBlastX LINE_L1-Tx1 99379 99738 31 + . . scaffold1743 WUBlastX LINE_RTE-X 112036 112365 44 - . . scaffold1743 WUBlastX LINE_RTE-X 112087 112257 80 - . . scaffold1743 WUBlastX LINE_RTE-X 112087 112476 59 - . . scaffold1743 WUBlastX LINE_RTE-X 112105 112320 72 - . . scaffold1743 TRF Tandem_Repeat 129862 129900 78 + . . scaffold1743 WUBlastX LTR_Pao 136776 137306 526 + . . scaffold1743 TRF Tandem_Repeat 138057 138141 140 + . . scaffold1743 TRF Tandem_Repeat 138058 138143 147 + . . scaffold1743 TRF Tandem_Repeat 138898 139028 150 + . . scaffold1743 TRF Tandem_Repeat 138898 139028 150 + . . scaffold1743 GLEAN mRNA 140905 152865 0.926405 - . ID=CGI_10011655; scaffold1743 WUBlastX LTR_Ngaro 151600 151998 110 - . . scaffold1743 GLEAN promoter 152866 153865 0.926405 - . ID=CGI_10011655; scaffold1743 WUBlastX DNA_IS4EU 162136 162678 73 + . . scaffold1743 WUBlastX DNA_TcMar-Marin 163216 163380 38 - . . scaffold1743 WUBlastX DNA_TcMar-Marin 163349 163597 46 - . . scaffold1743 WUBlastX DNA_TcMar-Marin 163632 163970 51 - . . scaffold1743 WUBlastX DNA_TcMar-Marin 163692 163979 80 - . . scaffold1743 WUBlastX DNA_TcMar-Fot1 169066 170421 305 + . . scaffold1743 WUBlastX DNA_TcMar-Fot1 169120 170223 345 + . . scaffold1743 WUBlastX DNA_TcMar-Fot1 169162 170076 349 + . . scaffold1743 GLEAN mRNA 196143 202860 0.808811 - . ID=CGI_10011656; scaffold1743 TRF Tandem_Repeat 200538 201311 950 + . . scaffold1743 GLEAN promoter 202861 203860 0.808811 - . ID=CGI_10011656; scaffold1743 GLEAN promoter 205587 206586 0.614112 + . ID=CGI_10011657; scaffold1743 GLEAN mRNA 206587 209579 0.614112 + . ID=CGI_10011657; scaffold1743 WUBlastX DNA_hAT-Charlie 207043 208080 28 + . . scaffold1743 WUBlastX DNA_hAT-Blackja 207142 207870 133 + . . scaffold1743 WUBlastX DNA_hAT-hAT5 208709 208915 34 + . . scaffold1743 WUBlastX DNA_hAT-hAT5 208712 208873 64 + . . scaffold1743 WUBlastX DNA_hAT-hAT5 209268 209414 43 + . . scaffold1743 WUBlastX LTR_Gypsy 221121 222365 766 - . . scaffold1743 GLEAN mRNA 225368 248286 0.742801 - . ID=CGI_10011658; scaffold1743 WUBlastX LINE_RTE-X 233893 234198 23 - . . scaffold1743 WUBlastX LINE_RTE-X 233965 234378 49 - . . scaffold1743 WUBlastX LINE_RTE-X 233986 234471 41 - . . scaffold1743 GLEAN promoter 248287 249286 0.742801 - . ID=CGI_10011658; scaffold1743 WUBlastX DNA_hAT-hATw 266491 266592 71 - . . scaffold1743 WUBlastX DNA_hAT-hATw 266615 266785 84 - . . scaffold1743 WUBlastX DNA_hAT-hATw 266636 266908 45 - . . scaffold1743 WUBlastX DNA_hAT-hATw 266865 267125 85 - . . scaffold1743 WUBlastX DNA_hAT-hATw 266973 267161 64 - . . scaffold1743 TRF Tandem_Repeat 268217 268246 60 + . . scaffold1743 WUBlastX DNA_TcMar-Ant1 270002 270844 111 + . . scaffold1743 WUBlastX DNA_hAT-hATw 271146 271349 36 - . . scaffold1743 GLEAN mRNA 273693 295804 0.999949 - . ID=CGI_10011659; scaffold1743 GLEAN promoter 295805 296762 0.999949 - . ID=CGI_10011659; scaffold1743 TRF Tandem_Repeat 295963 296762 1102 + . . scaffold1744 GLEAN mRNA 1575 3509 0.999999 - . ID=CGI_10001915; scaffold1744 GLEAN promoter 3510 4509 0.999999 - . ID=CGI_10001915; scaffold1744 GLEAN mRNA 14022 14918 0.654722 - . ID=CGI_10001918; scaffold1744 GLEAN promoter 14696 15695 0.999496 + . ID=CGI_10001919; scaffold1744 GLEAN promoter 14919 15918 0.654722 - . ID=CGI_10001918; scaffold1744 GLEAN mRNA 15696 18207 0.999496 + . ID=CGI_10001919; scaffold1744 GLEAN mRNA 22907 24067 0.999162 - . ID=CGI_10001922; scaffold1744 GLEAN promoter 24068 25067 0.999162 - . ID=CGI_10001922; scaffold1745 GLEAN promoter 7109 8108 0.777131 + . ID=CGI_10005402; scaffold1745 GLEAN mRNA 8109 9842 0.777131 + . ID=CGI_10005402; scaffold1745 WUBlastX LINE_L1 8502 8861 43 + . . scaffold1745 WUBlastX LTR_Gypsy-Cigr 13614 14882 773 + . . scaffold1745 TRF Tandem_Repeat 18611 18663 99 + . . scaffold1745 GLEAN promoter 19891 20890 0.632224 + . ID=CGI_10005403; scaffold1745 GLEAN mRNA 20891 31918 0.632224 + . ID=CGI_10005403; scaffold1745 TRF Tandem_Repeat 22531 22557 54 + . . scaffold1745 TRF Tandem_Repeat 28797 28878 56 + . . scaffold1745 TRF Tandem_Repeat 28801 28856 67 + . . scaffold1745 GLEAN mRNA 32786 58007 0.99601 - . ID=CGI_10005404; scaffold1745 WUBlastX LINE_RTE-X 34975 35214 39 - . . scaffold1745 TRF Tandem_Repeat 36116 36183 136 + . . scaffold1745 TRF Tandem_Repeat 38118 38196 158 + . . scaffold1745 TRF Tandem_Repeat 44483 44562 151 + . . scaffold1745 TRF Tandem_Repeat 45457 45524 82 + . . scaffold1745 GLEAN promoter 58008 59007 0.99601 - . ID=CGI_10005404; scaffold1745 TRF Tandem_Repeat 60034 60089 112 + . . scaffold1745 TRF Tandem_Repeat 62648 62693 92 + . . scaffold1745 TRF Tandem_Repeat 68175 68215 82 + . . scaffold1745 GLEAN promoter 76513 77512 0.437746 + . ID=CGI_10005405; scaffold1745 TRF Tandem_Repeat 76876 76916 82 + . . scaffold1745 GLEAN mRNA 77513 92057 0.437746 + . ID=CGI_10005405; scaffold1745 WUBlastX LINE_RTE-X 79241 79411 93 - . . scaffold1745 WUBlastX LINE_RTE-X 79268 79489 66 - . . scaffold1745 WUBlastX LINE_RTE-X 79271 79618 49 - . . scaffold1745 TRF Tandem_Repeat 90537 90584 60 + . . scaffold1745 TRF Tandem_Repeat 100357 100453 70 + . . scaffold1745 TRF Tandem_Repeat 100412 100456 72 + . . scaffold1745 WUBlastX DNA_Crypton 104404 104763 82 + . . scaffold1745 GLEAN mRNA 107455 123228 0.998783 - . ID=CGI_10005406; scaffold1745 TRF Tandem_Repeat 113400 113449 100 + . . scaffold1745 WUBlastX LTR_Ngaro 118140 118388 41 + . . scaffold1745 WUBlastX LTR_Ngaro 118337 118597 83 + . . scaffold1745 WUBlastX LTR_Ngaro 118382 118606 137 + . . scaffold1745 WUBlastX LTR_Ngaro 118433 118621 145 + . . scaffold1745 GLEAN promoter 123229 124228 0.998783 - . ID=CGI_10005406; scaffold1745 TRF Tandem_Repeat 124013 124069 114 + . . scaffold1745 TRF Tandem_Repeat 124109 124133 50 + . . scaffold1745 TRF Tandem_Repeat 126006 126053 53 + . . scaffold1746 GLEAN mRNA 4543 6035 0.558382 - . ID=CGI_10007277; scaffold1746 GLEAN promoter 5597 6596 0.649448 + . ID=CGI_10007278; scaffold1746 GLEAN promoter 6036 7035 0.558382 - . ID=CGI_10007277; scaffold1746 GLEAN mRNA 6597 6983 0.649448 + . ID=CGI_10007278; scaffold1746 GLEAN mRNA 7570 11116 0.535239 - . ID=CGI_10007279; scaffold1746 GLEAN promoter 11117 12116 0.535239 - . ID=CGI_10007279; scaffold1746 GLEAN promoter 44742 45741 0.485167 + . ID=CGI_10007280; scaffold1746 GLEAN mRNA 45742 110596 0.485167 + . ID=CGI_10007280; scaffold1746 TRF Tandem_Repeat 48210 48623 666 + . . scaffold1746 TRF Tandem_Repeat 50603 50982 543 + . . scaffold1746 TRF Tandem_Repeat 54853 54954 127 + . . scaffold1746 TRF Tandem_Repeat 56570 57421 961 + . . scaffold1746 TRF Tandem_Repeat 64702 65149 589 + . . scaffold1746 TRF Tandem_Repeat 66485 66755 428 + . . scaffold1746 TRF Tandem_Repeat 72302 72471 200 + . . scaffold1746 TRF Tandem_Repeat 72382 72489 126 + . . scaffold1746 TRF Tandem_Repeat 74319 74755 743 + . . scaffold1746 TRF Tandem_Repeat 83304 83332 58 + . . scaffold1746 TRF Tandem_Repeat 84789 84837 98 + . . scaffold1746 TRF Tandem_Repeat 88518 88562 90 + . . scaffold1746 TRF Tandem_Repeat 91868 91914 94 + . . scaffold1746 TRF Tandem_Repeat 99689 100668 1220 + . . scaffold1746 TRF Tandem_Repeat 106756 107819 1611 + . . scaffold1746 GLEAN promoter 113418 114417 1 + . ID=CGI_10007281; scaffold1746 GLEAN mRNA 114418 120694 1 + . ID=CGI_10007281; scaffold1746 TRF Tandem_Repeat 116347 117455 1097 + . . scaffold1746 TRF Tandem_Repeat 116347 117455 1330 + . . scaffold1746 GLEAN promoter 137756 138755 0.778212 + . ID=CGI_10007282; scaffold1746 GLEAN mRNA 138756 140735 0.778212 + . ID=CGI_10007282; scaffold1746 TRF Tandem_Repeat 147464 147629 150 + . . scaffold1746 TRF Tandem_Repeat 147467 147615 143 + . . scaffold1746 TRF Tandem_Repeat 149341 150121 830 + . . scaffold1746 GLEAN mRNA 151006 152682 0.999951 - . ID=CGI_10007283; scaffold1746 GLEAN promoter 152683 153682 0.999951 - . ID=CGI_10007283; scaffold1746 TRF Tandem_Repeat 152827 152907 112 + . . scaffold1746 WUBlastX LINE_Penelope 153172 153471 136 - . . scaffold1746 WUBlastX LINE_Penelope 153175 153534 53 - . . scaffold1746 WUBlastX LINE_Penelope 153187 153438 210 - . . scaffold1746 TRF Tandem_Repeat 154929 155018 125 + . . scaffold1746 GLEAN mRNA 155765 160237 0.980892 - . ID=CGI_10007284; scaffold1746 GLEAN promoter 160238 161237 0.980892 - . ID=CGI_10007284; scaffold1746 GLEAN mRNA 162176 162373 0.776526 - . ID=CGI_10007285; scaffold1746 GLEAN promoter 162374 163373 0.776526 - . ID=CGI_10007285; scaffold1746 TRF Tandem_Repeat 162626 162669 72 + . . scaffold1746 TRF Tandem_Repeat 163188 163247 111 + . . scaffold1746 TRF Tandem_Repeat 163365 163444 151 + . . scaffold1746 WUBlastX LINE_L2 174631 175377 53 - . . scaffold1746 WUBlastX RC_Helitron 174745 176271 717 - . . scaffold1747 TRF Tandem_Repeat 2300 3033 802 + . . scaffold1747 TRF Tandem_Repeat 14939 14989 84 + . . scaffold1747 WUBlastX LTR_Gypsy 19846 20136 49 - . . scaffold1747 WUBlastX LINE_L1-Tx1 25604 25849 42 - . . scaffold1747 WUBlastX DNA_TcMar-Tc2 26425 27360 143 + . . scaffold1747 WUBlastX DNA_TcMar-Tc2 27300 27518 85 + . . scaffold1747 WUBlastX DNA_TcMar-Tc2 27303 27560 55 + . . scaffold1747 GLEAN promoter 41461 42460 1 + . ID=CGI_10004400; scaffold1747 TRF Tandem_Repeat 42198 42242 90 + . . scaffold1747 TRF Tandem_Repeat 42242 42285 88 + . . scaffold1747 GLEAN mRNA 42461 42907 1 + . ID=CGI_10004400; scaffold1747 WUBlastX DNA_PiggyBac 42719 42883 36 + . . scaffold1747 WUBlastX DNA_PiggyBac 43443 43544 55 + . . scaffold1747 WUBlastX DNA_PiggyBac 44130 44231 37 + . . scaffold1747 WUBlastX DNA_PiggyBac 44249 44308 37 + . . scaffold1747 GLEAN mRNA 71488 77034 1 - . ID=CGI_10004402; scaffold1747 TRF Tandem_Repeat 74640 75063 533 + . . scaffold1747 GLEAN promoter 77035 78034 1 - . ID=CGI_10004402; scaffold1747 TRF Tandem_Repeat 85424 87412 2217 + . . scaffold1747 TRF Tandem_Repeat 85431 87271 2390 + . . scaffold1747 TRF Tandem_Repeat 90275 90310 54 + . . scaffold1748 TRF Tandem_Repeat 6748 6793 92 + . . scaffold1748 GLEAN mRNA 9729 21727 0.934576 - . ID=CGI_10002254; scaffold1748 TRF Tandem_Repeat 16230 16280 102 + . . scaffold1748 GLEAN promoter 16962 17961 0.999389 + . ID=CGI_10002255; scaffold1748 GLEAN mRNA 17962 26532 0.999389 + . ID=CGI_10002255; scaffold1748 TRF Tandem_Repeat 20531 20571 82 + . . scaffold1748 TRF Tandem_Repeat 20735 20798 128 + . . scaffold1748 GLEAN promoter 21728 22727 0.934576 - . ID=CGI_10002254; scaffold1748 WUBlastX LINE_L2 22677 22844 39 - . . scaffold1748 WUBlastX LINE_L2 22722 22844 103 - . . scaffold1748 TRF Tandem_Repeat 22867 22920 99 + . . scaffold1748 GLEAN promoter 26774 27773 0.407505 + . ID=CGI_10002256; scaffold1748 GLEAN mRNA 27774 37838 0.407505 + . ID=CGI_10002256; scaffold1748 TRF Tandem_Repeat 31937 32019 93 + . . scaffold1748 TRF Tandem_Repeat 36175 36209 70 + . . scaffold1748 TRF Tandem_Repeat 38600 38637 76 + . . scaffold1748 TRF Tandem_Repeat 39118 39148 62 + . . scaffold1749 TRF Tandem_Repeat 3920 3961 84 + . . scaffold1749 TRF Tandem_Repeat 12187 12465 442 + . . scaffold1749 WUBlastX LINE_L1 20971 21246 21 + . . scaffold1749 TRF Tandem_Repeat 22543 22676 92 + . . scaffold1749 WUBlastX LINE_Penelope 22740 23168 28 + . . scaffold1749 TRF Tandem_Repeat 31206 31244 78 + . . scaffold1749 TRF Tandem_Repeat 34566 34619 99 + . . scaffold1749 TRF Tandem_Repeat 36133 36237 55 + . . scaffold1749 TRF Tandem_Repeat 36133 36234 170 + . . scaffold1749 WUBlastX LTR_Gypsy 37346 38428 59 + . . scaffold1749 WUBlastX LTR_Gypsy 37532 38353 141 + . . scaffold1749 WUBlastX LTR_Gypsy 37553 38206 169 + . . scaffold1749 WUBlastX LTR_Gypsy 37556 38494 68 + . . scaffold1749 WUBlastX LTR_Gypsy 38497 38649 49 + . . scaffold1749 WUBlastX LTR_Gypsy 38530 42471 2225 + . . scaffold1749 WUBlastX LTR_Gypsy 40939 42783 895 + . . scaffold1749 WUBlastX LTR_Copia 42832 42918 21 + . . scaffold1749 TRF Tandem_Repeat 45289 45318 60 + . . scaffold1749 GLEAN promoter 45575 46574 0.726034 + . ID=CGI_10008251; scaffold1749 GLEAN mRNA 46575 57258 0.726034 + . ID=CGI_10008251; scaffold1749 WUBlastX LINE_Penelope 72310 72606 52 + . . scaffold1749 WUBlastX LINE_Penelope 72370 72702 59 + . . scaffold1749 WUBlastX LINE_RTE-BovB 73770 74156 43 - . . scaffold1749 WUBlastX LINE_RTE-X 73911 74219 74 - . . scaffold1749 WUBlastX LINE_RTE-BovB 73920 74297 70 - . . scaffold1749 WUBlastX LINE_RTE-BovB 74025 74447 63 - . . scaffold1749 TRF Tandem_Repeat 78037 78072 72 + . . scaffold1749 TRF Tandem_Repeat 85541 86345 1115 + . . scaffold1749 TRF Tandem_Repeat 86351 86390 52 + . . scaffold1749 GLEAN promoter 87032 88031 0.733495 + . ID=CGI_10008252; scaffold1749 GLEAN promoter 87269 88268 1 + . ID=CGI_10008253; scaffold1749 GLEAN mRNA 88032 88259 0.733495 + . ID=CGI_10008252; scaffold1749 GLEAN mRNA 88269 88508 1 + . ID=CGI_10008253; scaffold1749 WUBlastX DNA_Maverick 88920 89399 183 + . . scaffold1749 WUBlastX DNA_Maverick 89243 89926 52 + . . scaffold1749 WUBlastX DNA_Maverick 89729 89935 69 + . . scaffold1749 WUBlastX DNA_Maverick 89946 90017 31 + . . scaffold1749 WUBlastX DNA_Maverick 90593 90877 129 + . . scaffold1749 WUBlastX DNA_Maverick 90653 90883 147 + . . scaffold1749 WUBlastX DNA_Maverick 90879 91160 103 + . . scaffold1749 GLEAN mRNA 92161 94954 0.876214 - . ID=CGI_10008254; scaffold1749 WUBlastX LTR_DIRS 93800 94207 109 - . . scaffold1749 WUBlastX LTR_DIRS 93875 94213 115 - . . scaffold1749 WUBlastX LTR_DIRS 93935 94162 124 - . . scaffold1749 WUBlastX LTR_DIRS 94233 94514 31 - . . scaffold1749 WUBlastX LTR_DIRS 94233 94463 76 - . . scaffold1749 GLEAN promoter 94955 95954 0.876214 - . ID=CGI_10008254; scaffold1749 GLEAN mRNA 98863 99249 0.694469 - . ID=CGI_10008255; scaffold1749 GLEAN promoter 99250 100249 0.694469 - . ID=CGI_10008255; scaffold1749 TRF Tandem_Repeat 103203 103370 158 + . . scaffold1749 GLEAN promoter 103860 104859 0.57225 + . ID=CGI_10008256; scaffold1749 GLEAN mRNA 104860 117950 0.57225 + . ID=CGI_10008256; scaffold1749 WUBlastX DNA_Maverick 106322 106669 208 - . . scaffold1749 WUBlastX DNA_Maverick 106725 106877 88 - . . scaffold1749 WUBlastX DNA_Maverick 108579 108878 197 + . . scaffold1749 WUBlastX DNA_Maverick 108963 109409 334 + . . scaffold1749 WUBlastX DNA_Maverick 109465 109620 66 + . . scaffold1749 WUBlastX DNA_Maverick 109495 109620 68 + . . scaffold1749 WUBlastX DNA_Maverick 109577 109813 130 + . . scaffold1749 GLEAN mRNA 110907 112944 0.938592 - . ID=CGI_10008257; scaffold1749 GLEAN promoter 112945 113944 0.938592 - . ID=CGI_10008257; scaffold1749 TRF Tandem_Repeat 114626 114915 492 + . . scaffold1749 GLEAN promoter 124903 125902 0.999317 + . ID=CGI_10008258; scaffold1749 GLEAN mRNA 125903 126169 0.999317 + . ID=CGI_10008258; scaffold1749 WUBlastX LTR_Gypsy 149143 149607 247 + . . scaffold1749 WUBlastX LTR_Gypsy 149735 149836 23 + . . scaffold1749 TRF Tandem_Repeat 151714 151783 86 + . . scaffold1749 TRF Tandem_Repeat 151913 151942 53 + . . scaffold1749 GLEAN promoter 158520 159519 0.429059 + . ID=CGI_10008259; scaffold1749 GLEAN mRNA 159520 166455 0.429059 + . ID=CGI_10008259; scaffold1749 TRF Tandem_Repeat 164160 164213 90 + . . scaffold1749 GLEAN promoter 167130 168129 0.428785 + . ID=CGI_10008260; scaffold1749 GLEAN mRNA 168130 177487 0.428785 + . ID=CGI_10008260; scaffold1749 WUBlastX LINE_RTE-X 173784 174224 65 - . . scaffold1749 WUBlastX LINE_RTE-X 173871 174233 79 - . . scaffold1749 WUBlastX LINE_RTE-X 173910 174092 81 - . . scaffold1749 WUBlastX LINE_RTE-X 173919 174215 81 - . . scaffold1749 WUBlastX LINE_RTE-X 174232 174705 205 - . . scaffold1749 WUBlastX LINE_RTE-X 174445 174771 52 - . . scaffold1749 GLEAN mRNA 179252 187447 0.998809 - . ID=CGI_10008261; scaffold1749 GLEAN promoter 187004 188003 0.702743 + . ID=CGI_10008262; scaffold1749 GLEAN promoter 187448 188447 0.998809 - . ID=CGI_10008261; scaffold1749 GLEAN mRNA 188004 201401 0.702743 + . ID=CGI_10008262; scaffold1749 TRF Tandem_Repeat 188669 189363 839 + . . scaffold1749 TRF Tandem_Repeat 196652 196707 103 + . . scaffold1749 TRF Tandem_Repeat 201942 201995 108 + . . scaffold175 WUBlastX LINE_L1-Tx1 12 710 363 - . . scaffold175 TRF Tandem_Repeat 4180 4704 873 + . . scaffold175 TRF Tandem_Repeat 4180 4704 873 + . . scaffold175 TRF Tandem_Repeat 5318 6154 1232 + . . scaffold175 TRF Tandem_Repeat 6158 6207 73 + . . scaffold175 TRF Tandem_Repeat 6161 6212 68 + . . scaffold175 TRF Tandem_Repeat 6174 6211 67 + . . scaffold175 TRF Tandem_Repeat 6354 6933 750 + . . scaffold175 TRF Tandem_Repeat 11426 11473 96 + . . scaffold175 WUBlastX LINE_RTE-X 15891 16949 317 - . . scaffold175 WUBlastX LINE_RTE-X 16719 16994 55 - . . scaffold175 WUBlastX LINE_L1-Tx1 21530 21790 51 + . . scaffold175 WUBlastX LINE_L1-Tx1 21581 21880 178 + . . scaffold175 WUBlastX LINE_L1-Tx1 21895 23076 175 + . . scaffold175 WUBlastX LINE_L1 21895 22410 219 + . . scaffold175 WUBlastX LINE_L1-Tx1 23034 23513 411 + . . scaffold175 WUBlastX LINE_L1 23518 23631 66 + . . scaffold175 GLEAN mRNA 51560 54034 0.540733 - . ID=CGI_10021302; scaffold175 GLEAN promoter 54035 55034 0.540733 - . ID=CGI_10021302; scaffold175 WUBlastX LINE_L1-Tx1 55186 55833 190 + . . scaffold175 WUBlastX LINE_L1 56440 57720 277 + . . scaffold175 WUBlastX LINE_L1-Tx1 58220 58351 20 + . . scaffold175 WUBlastX LINE_L1-Tx1 59517 60731 201 - . . scaffold175 WUBlastX LINE_L1 60653 60748 22 - . . scaffold175 WUBlastX LINE_Penelope 61183 62289 331 - . . scaffold175 WUBlastX LINE_Penelope 62117 62473 129 - . . scaffold175 WUBlastX LINE_Penelope 62138 62539 53 - . . scaffold175 WUBlastX LINE_Penelope 62469 62627 51 - . . scaffold175 TRF Tandem_Repeat 63290 63316 54 + . . scaffold175 GLEAN promoter 64317 65316 0.999661 + . ID=CGI_10021303; scaffold175 GLEAN mRNA 65317 67044 0.999661 + . ID=CGI_10021303; scaffold175 WUBlastX LTR_Gypsy 65677 66042 23 + . . scaffold175 TRF Tandem_Repeat 68305 68362 116 + . . scaffold175 GLEAN promoter 69695 70694 0.582653 + . ID=CGI_10021304; scaffold175 GLEAN mRNA 70695 71686 0.582653 + . ID=CGI_10021304; scaffold175 TRF Tandem_Repeat 77970 78016 85 + . . scaffold175 GLEAN mRNA 81161 84610 1 - . ID=CGI_10021305; scaffold175 GLEAN promoter 84611 85610 1 - . ID=CGI_10021305; scaffold175 GLEAN promoter 87812 88811 0.927941 + . ID=CGI_10021306; scaffold175 GLEAN mRNA 88812 92497 0.927941 + . ID=CGI_10021306; scaffold175 TRF Tandem_Repeat 89134 89208 118 + . . scaffold175 TRF Tandem_Repeat 93581 93676 119 + . . scaffold175 TRF Tandem_Repeat 97106 97168 126 + . . scaffold175 GLEAN promoter 101288 102287 1 + . ID=CGI_10021307; scaffold175 GLEAN mRNA 102288 104056 1 + . ID=CGI_10021307; scaffold175 GLEAN promoter 108290 109289 0.991212 + . ID=CGI_10021308; scaffold175 GLEAN mRNA 109290 122034 0.991212 + . ID=CGI_10021308; scaffold175 TRF Tandem_Repeat 112066 112172 80 + . . scaffold175 TRF Tandem_Repeat 113249 113280 64 + . . scaffold175 TRF Tandem_Repeat 118292 118336 72 + . . scaffold175 TRF Tandem_Repeat 121445 121474 60 + . . scaffold175 GLEAN promoter 125677 126676 0.645919 + . ID=CGI_10021309; scaffold175 GLEAN mRNA 126677 127111 0.645919 + . ID=CGI_10021309; scaffold175 GLEAN promoter 127311 128310 0.991694 + . ID=CGI_10021310; scaffold175 GLEAN mRNA 128311 129142 0.991694 + . ID=CGI_10021310; scaffold175 TRF Tandem_Repeat 134744 134790 94 + . . scaffold175 GLEAN promoter 157189 158188 0.999624 + . ID=CGI_10021311; scaffold175 GLEAN mRNA 158189 167433 0.999624 + . ID=CGI_10021311; scaffold175 WUBlastX LINE_Penelope 160311 161189 79 + . . scaffold175 WUBlastX LINE_Penelope 160455 161198 274 + . . scaffold175 TRF Tandem_Repeat 169166 169223 116 + . . scaffold175 GLEAN promoter 169734 170733 0.68151 + . ID=CGI_10021312; scaffold175 GLEAN mRNA 170734 186113 0.68151 + . ID=CGI_10021312; scaffold175 TRF Tandem_Repeat 179167 180891 2114 + . . scaffold175 GLEAN promoter 187490 188489 0.610235 + . ID=CGI_10021314; scaffold175 GLEAN mRNA 188018 193088 1 - . ID=CGI_10021313; scaffold175 GLEAN mRNA 188490 220728 0.610235 + . ID=CGI_10021314; scaffold175 GLEAN promoter 193089 194088 1 - . ID=CGI_10021313; scaffold175 TRF Tandem_Repeat 195536 195573 51 + . . scaffold175 TRF Tandem_Repeat 195770 196768 1261 + . . scaffold175 GLEAN mRNA 199812 201479 0.996199 - . ID=CGI_10021315; scaffold175 GLEAN promoter 201480 202479 0.996199 - . ID=CGI_10021315; scaffold175 GLEAN mRNA 205894 207711 1 - . ID=CGI_10021316; scaffold175 GLEAN promoter 207712 208711 1 - . ID=CGI_10021316; scaffold175 TRF Tandem_Repeat 222332 222644 488 + . . scaffold175 WUBlastX DNA_Harbinger 241433 241741 78 + . . scaffold175 WUBlastX DNA_Harbinger 241481 241750 90 + . . scaffold175 GLEAN promoter 241942 242941 0.999907 + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L1-Tx1 242258 242935 56 + . . scaffold175 WUBlastX LINE_L2 242312 242872 94 + . . scaffold175 GLEAN mRNA 242942 249112 0.999907 + . ID=CGI_10021317; scaffold175 WUBlastX LINE_L1 244129 245274 450 + . . scaffold175 WUBlastX LINE_L1 245267 246748 836 + . . scaffold175 WUBlastX LINE_L1-Tx1 246939 247727 79 + . . scaffold175 WUBlastX DNA_Harbinger 250255 250554 72 - . . scaffold175 WUBlastX DNA_Harbinger 250258 250635 70 - . . scaffold175 WUBlastX DNA_Harbinger 250348 250554 98 - . . scaffold175 WUBlastX DNA_Harbinger 251482 251724 136 - . . scaffold175 WUBlastX DNA_Harbinger 251720 252136 201 - . . scaffold175 TRF Tandem_Repeat 252929 252979 50 + . . scaffold175 TRF Tandem_Repeat 252936 252979 54 + . . scaffold175 WUBlastX LINE_RTE-X 253024 253314 113 - . . scaffold175 WUBlastX LINE_RTE-X 253156 253359 55 - . . scaffold175 WUBlastX DNA_Zator 257359 257544 114 - . . scaffold175 WUBlastX DNA_Zator 257751 257792 29 - . . scaffold175 WUBlastX LTR_Gypsy 259424 259633 120 - . . scaffold175 TRF Tandem_Repeat 275302 275558 419 + . . scaffold175 TRF Tandem_Repeat 278737 278776 53 + . . scaffold175 TRF Tandem_Repeat 279833 279864 55 + . . scaffold175 TRF Tandem_Repeat 280328 280390 126 + . . scaffold175 TRF Tandem_Repeat 280760 280796 74 + . . scaffold175 WUBlastX LINE_RTE-X 281998 282780 221 + . . scaffold175 WUBlastX LINE_RTE-X 282112 282753 387 + . . scaffold175 WUBlastX LINE_RTE-X 282764 283117 175 + . . scaffold175 WUBlastX LINE_RTE-X 282773 283249 125 + . . scaffold175 WUBlastX LINE_RTE-X 284189 284755 62 + . . scaffold175 WUBlastX LINE_RTE-X 284345 284776 69 + . . scaffold175 TRF Tandem_Repeat 284817 284905 137 + . . scaffold175 TRF Tandem_Repeat 284952 285045 125 + . . scaffold175 TRF Tandem_Repeat 285841 286090 129 + . . scaffold175 TRF Tandem_Repeat 285862 286000 84 + . . scaffold175 TRF Tandem_Repeat 289505 290702 1608 + . . scaffold175 WUBlastX DNA_IS4EU 294670 295227 244 + . . scaffold175 WUBlastX DNA_IS4EU 295167 295358 74 + . . scaffold175 WUBlastX DNA_IS4EU 295488 296114 480 - . . scaffold175 WUBlastX DNA_IS4EU 296059 296208 47 - . . scaffold175 WUBlastX DNA_IS4EU 296083 296319 44 - . . scaffold175 WUBlastX DNA_IS4EU 296973 297047 40 - . . scaffold175 WUBlastX DNA_IS4EU 297333 297500 51 - . . scaffold175 TRF Tandem_Repeat 299327 299373 71 + . . scaffold175 TRF Tandem_Repeat 299329 299373 63 + . . scaffold175 WUBlastX LINE_L1-Tx1 299413 299781 128 - . . scaffold175 TRF Tandem_Repeat 301280 301490 171 + . . scaffold175 GLEAN promoter 301857 302856 1 + . ID=CGI_10021318; scaffold175 GLEAN mRNA 302857 315268 1 + . ID=CGI_10021318; scaffold175 WUBlastX LINE_RTE-X 309251 309415 71 + . . scaffold175 TRF Tandem_Repeat 310880 310950 115 + . . scaffold175 TRF Tandem_Repeat 311780 312407 854 + . . scaffold175 GLEAN mRNA 316079 317576 1 - . ID=CGI_10021319; scaffold175 GLEAN promoter 317577 318576 1 - . ID=CGI_10021319; scaffold175 GLEAN promoter 318251 319250 1 + . ID=CGI_10021320; scaffold175 GLEAN mRNA 319251 321032 1 + . ID=CGI_10021320; scaffold175 GLEAN mRNA 321770 332822 0.999994 - . ID=CGI_10021321; scaffold175 TRF Tandem_Repeat 326270 326391 208 + . . scaffold175 WUBlastX LINE_Penelope 329677 330171 94 + . . scaffold175 GLEAN promoter 332823 333822 0.999994 - . ID=CGI_10021321; scaffold175 TRF Tandem_Repeat 332864 332896 57 + . . scaffold175 GLEAN mRNA 333540 337363 1 - . ID=CGI_10021322; scaffold175 GLEAN promoter 337364 338363 1 - . ID=CGI_10021322; scaffold175 TRF Tandem_Repeat 337879 337916 76 + . . scaffold175 TRF Tandem_Repeat 345988 346695 956 + . . scaffold175 TRF Tandem_Repeat 363719 363787 68 + . . scaffold175 GLEAN promoter 366936 367935 1 + . ID=CGI_10021323; scaffold175 GLEAN mRNA 367936 370649 1 + . ID=CGI_10021323; scaffold175 TRF Tandem_Repeat 368169 368218 82 + . . scaffold175 TRF Tandem_Repeat 373501 373625 115 + . . scaffold175 TRF Tandem_Repeat 373749 373794 92 + . . scaffold175 GLEAN promoter 375012 376011 0.937358 + . ID=CGI_10021324; scaffold175 GLEAN mRNA 376012 380815 0.937358 + . ID=CGI_10021324; scaffold175 TRF Tandem_Repeat 377469 377554 100 + . . scaffold175 GLEAN mRNA 384616 384930 0.618006 - . ID=CGI_10021325; scaffold175 GLEAN promoter 384931 385930 0.618006 - . ID=CGI_10021325; scaffold175 TRF Tandem_Repeat 389091 389188 81 + . . scaffold175 GLEAN promoter 392122 393121 0.934391 + . ID=CGI_10021326; scaffold175 GLEAN mRNA 393122 399734 0.934391 + . ID=CGI_10021326; scaffold175 TRF Tandem_Repeat 394435 394470 63 + . . scaffold175 TRF Tandem_Repeat 396288 396334 94 + . . scaffold175 TRF Tandem_Repeat 399740 399784 90 + . . scaffold175 GLEAN promoter 406728 407727 0.647278 + . ID=CGI_10021327; scaffold175 GLEAN mRNA 407728 411867 0.647278 + . ID=CGI_10021327; scaffold175 TRF Tandem_Repeat 408951 409221 348 + . . scaffold175 TRF Tandem_Repeat 412129 412178 100 + . . scaffold175 GLEAN promoter 417677 418676 0.998389 + . ID=CGI_10021328; scaffold175 GLEAN mRNA 418677 422545 0.998389 + . ID=CGI_10021328; scaffold175 TRF Tandem_Repeat 420572 420633 124 + . . scaffold175 GLEAN promoter 422741 423740 0.992484 + . ID=CGI_10021329; scaffold175 GLEAN mRNA 423741 425359 0.992484 + . ID=CGI_10021329; scaffold175 GLEAN mRNA 427536 436140 0.752622 - . ID=CGI_10021330; scaffold175 TRF Tandem_Repeat 433382 434522 1570 + . . scaffold175 GLEAN promoter 436141 437140 0.752622 - . ID=CGI_10021330; scaffold175 TRF Tandem_Repeat 437272 437320 98 + . . scaffold175 GLEAN promoter 440500 441499 0.937811 + . ID=CGI_10021331; scaffold175 TRF Tandem_Repeat 441028 441488 633 + . . scaffold175 TRF Tandem_Repeat 441028 441415 632 + . . scaffold175 GLEAN mRNA 441500 446832 0.937811 + . ID=CGI_10021331; scaffold175 TRF Tandem_Repeat 444495 444817 229 + . . scaffold175 TRF Tandem_Repeat 444495 444783 353 + . . scaffold175 TRF Tandem_Repeat 444716 444797 110 + . . scaffold175 TRF Tandem_Repeat 446046 446722 1087 + . . scaffold175 GLEAN mRNA 449101 454837 1 - . ID=CGI_10021332; scaffold175 GLEAN promoter 449429 450428 0.999324 + . ID=CGI_10021333; scaffold175 GLEAN mRNA 450429 468284 0.999324 + . ID=CGI_10021333; scaffold175 GLEAN promoter 454838 455837 1 - . ID=CGI_10021332; scaffold175 TRF Tandem_Repeat 457613 457733 75 + . . scaffold175 TRF Tandem_Repeat 457621 457838 235 + . . scaffold175 TRF Tandem_Repeat 457646 457839 141 + . . scaffold175 TRF Tandem_Repeat 457646 457877 252 + . . scaffold175 TRF Tandem_Repeat 457682 457877 150 + . . scaffold175 TRF Tandem_Repeat 463654 463720 134 + . . scaffold175 GLEAN mRNA 471780 490454 0.998407 - . ID=CGI_10021334; scaffold175 WUBlastX DNA_IS4EU 476804 477397 175 - . . scaffold175 WUBlastX DNA_IS4EU 476813 477712 104 - . . scaffold175 GLEAN promoter 489966 490965 1 + . ID=CGI_10021335; scaffold175 GLEAN promoter 490455 491454 0.998407 - . ID=CGI_10021334; scaffold175 GLEAN mRNA 490966 492519 1 + . ID=CGI_10021335; scaffold175 WUBlastX LINE_RTE-X 525900 526013 31 - . . scaffold175 WUBlastX LINE_RTE-X 526010 526162 32 - . . scaffold175 WUBlastX LINE_RTE-X 526397 526540 47 - . . scaffold175 WUBlastX LINE_RTE-X 526397 526486 49 - . . scaffold175 WUBlastX LINE_RTE-X 526518 526709 59 - . . scaffold175 WUBlastX LINE_RTE-X 526554 526718 90 - . . scaffold175 WUBlastX LINE_RTE-X 526566 526778 36 - . . scaffold175 GLEAN mRNA 536216 540124 0.999676 - . ID=CGI_10021336; scaffold175 TRF Tandem_Repeat 537124 537150 54 + . . scaffold175 GLEAN promoter 540125 541124 0.999676 - . ID=CGI_10021336; scaffold175 TRF Tandem_Repeat 543126 543173 96 + . . scaffold175 TRF Tandem_Repeat 545388 545441 76 + . . scaffold175 TRF Tandem_Repeat 545393 545438 76 + . . scaffold175 TRF Tandem_Repeat 556708 556772 71 + . . scaffold175 TRF Tandem_Repeat 561617 561682 123 + . . scaffold175 TRF Tandem_Repeat 570665 572146 893 + . . scaffold175 TRF Tandem_Repeat 570701 572217 1119 + . . scaffold175 TRF Tandem_Repeat 572236 573266 751 + . . scaffold175 WUBlastX LINE_L1 586646 587386 76 + . . scaffold175 WUBlastX LINE_L1-Tx1 586832 587395 299 + . . scaffold175 WUBlastX LINE_L1-Tx1 586835 588160 165 + . . scaffold175 WUBlastX LINE_L1-Tx1 587377 587826 210 + . . scaffold175 WUBlastX LINE_L1-Tx1 588165 588800 68 + . . scaffold175 WUBlastX LINE_L1-Tx1 588303 588785 77 + . . scaffold175 TRF Tandem_Repeat 590662 590686 50 + . . scaffold175 TRF Tandem_Repeat 590684 590748 114 + . . scaffold175 WUBlastX LINE_L1 602917 603207 53 + . . scaffold175 WUBlastX LINE_L1-Tx1 603085 603243 69 + . . scaffold175 WUBlastX DNA_Sola 612278 613123 314 + . . scaffold175 WUBlastX DNA_Sola 613365 613568 136 + . . scaffold175 WUBlastX DNA_Sola 614032 614421 147 + . . scaffold175 WUBlastX DNA_Sola 614107 614421 150 + . . scaffold175 TRF Tandem_Repeat 616306 616341 72 + . . scaffold175 TRF Tandem_Repeat 622152 622181 60 + . . scaffold175 TRF Tandem_Repeat 629479 629539 79 + . . scaffold175 TRF Tandem_Repeat 629485 629539 56 + . . scaffold175 TRF Tandem_Repeat 629486 629539 72 + . . scaffold175 TRF Tandem_Repeat 638047 638076 60 + . . scaffold175 GLEAN mRNA 638240 653207 0.863777 - . ID=CGI_10021337; scaffold175 TRF Tandem_Repeat 640572 641814 2053 + . . scaffold175 TRF Tandem_Repeat 641981 642034 58 + . . scaffold175 TRF Tandem_Repeat 641981 642034 58 + . . scaffold175 TRF Tandem_Repeat 642520 642593 148 + . . scaffold175 TRF Tandem_Repeat 648259 649051 1157 + . . scaffold175 TRF Tandem_Repeat 649220 649258 60 + . . scaffold175 GLEAN promoter 653208 654207 0.863777 - . ID=CGI_10021337; scaffold175 TRF Tandem_Repeat 664725 664780 112 + . . scaffold175 GLEAN mRNA 665072 668625 0.999221 - . ID=CGI_10021338; scaffold175 GLEAN promoter 668626 669625 0.999221 - . ID=CGI_10021338; scaffold175 TRF Tandem_Repeat 670217 670261 90 + . . scaffold175 GLEAN mRNA 671301 671852 0.618007 - . ID=CGI_10021339; scaffold175 GLEAN promoter 671853 672852 0.618007 - . ID=CGI_10021339; scaffold175 WUBlastX DNA_hAT 681597 681911 144 + . . scaffold1750 WUBlastX LINE_RTE-X 2186 2515 121 + . . scaffold1750 GLEAN mRNA 4638 5201 1 - . ID=CGI_10021460; scaffold1750 GLEAN promoter 5202 6201 1 - . ID=CGI_10021460; scaffold1750 GLEAN promoter 7946 8945 0.686268 + . ID=CGI_10021461; scaffold1750 TRF Tandem_Repeat 8163 8423 294 + . . scaffold1750 TRF Tandem_Repeat 8446 8713 170 + . . scaffold1750 GLEAN mRNA 8946 22537 0.686268 + . ID=CGI_10021461; scaffold1750 WUBlastX LINE_Jockey 17462 17530 24 + . . scaffold1750 WUBlastX LINE_RTE-X 17716 17748 24 + . . scaffold1750 WUBlastX LINE_RTE-X 17911 18588 429 + . . scaffold1750 WUBlastX LINE_RTE-X 18560 19204 282 + . . scaffold1750 WUBlastX LINE_RTE-X 18575 19537 115 + . . scaffold1750 WUBlastX LINE_RTE-X 19603 19773 30 + . . scaffold1750 GLEAN mRNA 23671 28822 0.549894 - . ID=CGI_10021462; scaffold1750 GLEAN promoter 28823 29822 0.549894 - . ID=CGI_10021462; scaffold1750 GLEAN promoter 29275 30274 0.601543 + . ID=CGI_10021463; scaffold1750 GLEAN mRNA 30275 33587 0.601543 + . ID=CGI_10021463; scaffold1750 GLEAN promoter 42550 43549 0.622741 + . ID=CGI_10021464; scaffold1750 GLEAN mRNA 43550 58544 0.622741 + . ID=CGI_10021464; scaffold1750 TRF Tandem_Repeat 46948 47988 1171 + . . scaffold1750 TRF Tandem_Repeat 47125 48119 685 + . . scaffold1750 TRF Tandem_Repeat 47762 47911 72 + . . scaffold1750 TRF Tandem_Repeat 51553 51859 434 + . . scaffold1750 TRF Tandem_Repeat 70175 71117 1339 + . . scaffold1750 TRF Tandem_Repeat 71148 71199 77 + . . scaffold1750 GLEAN mRNA 71353 77746 0.992486 - . ID=CGI_10021465; scaffold1750 TRF Tandem_Repeat 73644 73797 299 + . . scaffold1750 GLEAN promoter 77651 78650 0.398816 + . ID=CGI_10021466; scaffold1750 GLEAN promoter 77747 78746 0.992486 - . ID=CGI_10021465; scaffold1750 GLEAN mRNA 78651 82659 0.398816 + . ID=CGI_10021466; scaffold1750 TRF Tandem_Repeat 78890 78941 104 + . . scaffold1750 TRF Tandem_Repeat 80030 80765 676 + . . scaffold1750 WUBlastX DNA_hAT-Ac 86399 87430 195 + . . scaffold1750 WUBlastX DNA_hAT-Ac 87353 88132 120 + . . scaffold1750 WUBlastX DNA_hAT-Ac 88613 90046 220 + . . scaffold1750 TRF Tandem_Repeat 90440 90473 59 + . . scaffold1750 GLEAN promoter 92642 93641 1 + . ID=CGI_10021467; scaffold1750 TRF Tandem_Repeat 93356 93419 94 + . . scaffold1750 TRF Tandem_Repeat 93357 93419 76 + . . scaffold1750 GLEAN mRNA 93642 95338 1 + . ID=CGI_10021467; scaffold1750 GLEAN mRNA 97530 101467 0.893529 - . ID=CGI_10021468; scaffold1750 GLEAN promoter 101468 102467 0.893529 - . ID=CGI_10021468; scaffold1750 GLEAN promoter 102959 103958 0.754188 + . ID=CGI_10021469; scaffold1750 GLEAN mRNA 103959 143562 0.754188 + . ID=CGI_10021469; scaffold1750 WUBlastX LINE_RTE-BovB 104239 104784 564 - . . scaffold1750 TRF Tandem_Repeat 109196 109509 531 + . . scaffold1750 GLEAN mRNA 117278 118928 1 - . ID=CGI_10021470; scaffold1750 GLEAN promoter 118929 119928 1 - . ID=CGI_10021470; scaffold1750 TRF Tandem_Repeat 136588 137173 917 + . . scaffold1750 TRF Tandem_Repeat 136803 136904 54 + . . scaffold1750 TRF Tandem_Repeat 139784 139828 63 + . . scaffold1750 GLEAN promoter 145844 146843 0.999676 + . ID=CGI_10021471; scaffold1750 GLEAN mRNA 146844 155774 0.999676 + . ID=CGI_10021471; scaffold1750 TRF Tandem_Repeat 151418 152042 594 + . . scaffold1750 TRF Tandem_Repeat 151438 151544 52 + . . scaffold1750 GLEAN promoter 164586 165585 0.680922 + . ID=CGI_10021472; scaffold1750 GLEAN mRNA 165586 189500 0.680922 + . ID=CGI_10021472; scaffold1750 TRF Tandem_Repeat 170482 170520 71 + . . scaffold1750 TRF Tandem_Repeat 170745 170781 67 + . . scaffold1750 TRF Tandem_Repeat 174999 175295 567 + . . scaffold1750 TRF Tandem_Repeat 182009 182945 873 + . . scaffold1750 TRF Tandem_Repeat 184877 185080 354 + . . scaffold1750 TRF Tandem_Repeat 186455 186711 370 + . . scaffold1750 TRF Tandem_Repeat 189232 189316 71 + . . scaffold1750 TRF Tandem_Repeat 195126 195157 64 + . . scaffold1750 GLEAN mRNA 195913 201355 0.996555 - . ID=CGI_10021473; scaffold1750 GLEAN promoter 201356 202355 0.996555 - . ID=CGI_10021473; scaffold1750 TRF Tandem_Repeat 206345 206399 58 + . . scaffold1750 TRF Tandem_Repeat 206345 206404 70 + . . scaffold1750 TRF Tandem_Repeat 206357 206404 60 + . . scaffold1750 GLEAN promoter 216545 217544 0.99996 + . ID=CGI_10021474; scaffold1750 GLEAN mRNA 217545 223545 0.99996 + . ID=CGI_10021474; scaffold1750 TRF Tandem_Repeat 219710 219754 54 + . . scaffold1750 GLEAN mRNA 227209 235623 0.823116 - . ID=CGI_10021475; scaffold1750 TRF Tandem_Repeat 228727 228799 87 + . . scaffold1750 GLEAN promoter 228777 229776 1 + . ID=CGI_10021476; scaffold1750 GLEAN mRNA 229777 232957 1 + . ID=CGI_10021476; scaffold1750 WUBlastX DNA_hAT 229822 231213 454 + . . scaffold1750 TRF Tandem_Repeat 231233 231285 106 + . . scaffold1750 WUBlastX DNA_hAT 231704 231898 100 + . . scaffold1750 WUBlastX DNA_hAT 232273 232422 68 + . . scaffold1750 WUBlastX DNA_hAT 232757 232900 26 + . . scaffold1750 GLEAN promoter 235525 236524 0.999998 + . ID=CGI_10021477; scaffold1750 GLEAN promoter 235624 236623 0.823116 - . ID=CGI_10021475; scaffold1750 TRF Tandem_Repeat 235685 236036 578 + . . scaffold1750 GLEAN mRNA 236525 237481 0.999998 + . ID=CGI_10021477; scaffold1750 TRF Tandem_Repeat 237758 237851 56 + . . scaffold1750 TRF Tandem_Repeat 239505 239588 50 + . . scaffold1750 TRF Tandem_Repeat 239505 239634 233 + . . scaffold1750 TRF Tandem_Repeat 240798 241277 593 + . . scaffold1750 GLEAN mRNA 242314 249981 0.764883 - . ID=CGI_10021478; scaffold1750 TRF Tandem_Repeat 243753 244024 355 + . . scaffold1750 GLEAN promoter 249380 250379 0.811575 + . ID=CGI_10021479; scaffold1750 GLEAN promoter 249982 250981 0.764883 - . ID=CGI_10021478; scaffold1750 GLEAN mRNA 250380 259197 0.811575 + . ID=CGI_10021479; scaffold1750 TRF Tandem_Repeat 258586 258781 338 + . . scaffold1750 TRF Tandem_Repeat 260495 260611 114 + . . scaffold1750 TRF Tandem_Repeat 260496 260603 97 + . . scaffold1750 TRF Tandem_Repeat 262396 262534 117 + . . scaffold1750 TRF Tandem_Repeat 263570 263893 258 + . . scaffold1750 TRF Tandem_Repeat 263570 263914 274 + . . scaffold1750 TRF Tandem_Repeat 264101 264475 213 + . . scaffold1750 TRF Tandem_Repeat 264103 264301 140 + . . scaffold1750 TRF Tandem_Repeat 264202 264348 116 + . . scaffold1750 TRF Tandem_Repeat 264611 264733 93 + . . scaffold1750 GLEAN mRNA 266056 272186 1 - . ID=CGI_10021480; scaffold1750 TRF Tandem_Repeat 267615 267655 82 + . . scaffold1750 GLEAN promoter 272187 273186 1 - . ID=CGI_10021480; scaffold1750 TRF Tandem_Repeat 272659 272710 104 + . . scaffold1750 GLEAN mRNA 275057 279660 1 - . ID=CGI_10021481; scaffold1750 TRF Tandem_Repeat 278006 278070 121 + . . scaffold1750 GLEAN promoter 279661 280660 1 - . ID=CGI_10021481; scaffold1750 GLEAN mRNA 279982 280293 1 - . ID=CGI_10021482; scaffold1750 GLEAN promoter 280294 281293 1 - . ID=CGI_10021482; scaffold1750 TRF Tandem_Repeat 280728 280790 126 + . . scaffold1750 GLEAN mRNA 281879 282064 1 - . ID=CGI_10021483; scaffold1750 GLEAN promoter 282065 283064 1 - . ID=CGI_10021483; scaffold1750 TRF Tandem_Repeat 282666 282728 126 + . . scaffold1750 TRF Tandem_Repeat 282860 283311 337 + . . scaffold1750 TRF Tandem_Repeat 282860 283218 382 + . . scaffold1750 TRF Tandem_Repeat 282861 283311 354 + . . scaffold1750 TRF Tandem_Repeat 287162 287199 76 + . . scaffold1750 GLEAN mRNA 289337 289663 0.618186 - . ID=CGI_10021484; scaffold1750 GLEAN promoter 289664 290663 0.618186 - . ID=CGI_10021484; scaffold1750 TRF Tandem_Repeat 290843 290901 109 + . . scaffold1750 GLEAN mRNA 294140 311563 0.999353 - . ID=CGI_10021485; scaffold1750 TRF Tandem_Repeat 294772 295163 452 + . . scaffold1750 TRF Tandem_Repeat 294772 295163 398 + . . scaffold1750 TRF Tandem_Repeat 297343 297546 374 + . . scaffold1750 TRF Tandem_Repeat 298197 298630 748 + . . scaffold1750 TRF Tandem_Repeat 304038 304081 88 + . . scaffold1750 GLEAN promoter 311564 312563 0.999353 - . ID=CGI_10021485; scaffold1750 TRF Tandem_Repeat 313530 313588 90 + . . scaffold1750 GLEAN promoter 313951 314950 1 + . ID=CGI_10021486; scaffold1750 GLEAN mRNA 314951 316888 1 + . ID=CGI_10021486; scaffold1750 TRF Tandem_Repeat 320420 320455 72 + . . scaffold1750 TRF Tandem_Repeat 330280 330318 78 + . . scaffold1750 TRF Tandem_Repeat 330533 330566 68 + . . scaffold1750 TRF Tandem_Repeat 331212 331327 205 + . . scaffold1750 TRF Tandem_Repeat 331664 331822 201 + . . scaffold1750 TRF Tandem_Repeat 332275 332343 120 + . . scaffold1750 TRF Tandem_Repeat 333004 333039 72 + . . scaffold1750 TRF Tandem_Repeat 344324 344356 66 + . . scaffold1750 TRF Tandem_Repeat 346597 346660 110 + . . scaffold1750 TRF Tandem_Repeat 346916 346956 73 + . . scaffold1750 TRF Tandem_Repeat 347899 347958 102 + . . scaffold1750 GLEAN promoter 348496 349495 0.59339 + . ID=CGI_10021487; scaffold1750 GLEAN mRNA 349496 353828 0.59339 + . ID=CGI_10021487; scaffold1750 TRF Tandem_Repeat 377273 377311 55 + . . scaffold1750 GLEAN mRNA 379320 383614 0.999387 - . ID=CGI_10021488; scaffold1750 GLEAN promoter 383615 384614 0.999387 - . ID=CGI_10021488; scaffold1750 TRF Tandem_Repeat 383992 384042 102 + . . scaffold1750 TRF Tandem_Repeat 387555 387586 55 + . . scaffold1750 GLEAN promoter 389443 390442 1 + . ID=CGI_10021489; scaffold1750 GLEAN mRNA 390443 393703 1 + . ID=CGI_10021489; scaffold1750 TRF Tandem_Repeat 395325 395865 260 + . . scaffold1750 TRF Tandem_Repeat 395347 395567 101 + . . scaffold1750 TRF Tandem_Repeat 395531 395867 283 + . . scaffold1750 TRF Tandem_Repeat 395534 395865 314 + . . scaffold1750 TRF Tandem_Repeat 395641 395723 69 + . . scaffold1750 GLEAN mRNA 408828 412839 0.988388 - . ID=CGI_10021490; scaffold1750 GLEAN promoter 412840 413839 0.988388 - . ID=CGI_10021490; scaffold1750 TRF Tandem_Repeat 413811 413857 78 + . . scaffold1750 TRF Tandem_Repeat 415048 415083 63 + . . scaffold1750 TRF Tandem_Repeat 419267 419318 104 + . . scaffold1750 TRF Tandem_Repeat 426575 426625 102 + . . scaffold1750 TRF Tandem_Repeat 429637 429664 56 + . . scaffold1750 TRF Tandem_Repeat 430086 430133 96 + . . scaffold1750 GLEAN promoter 431632 432631 0.999675 + . ID=CGI_10021491; scaffold1750 GLEAN mRNA 432632 461132 0.999675 + . ID=CGI_10021491; scaffold1750 TRF Tandem_Repeat 432875 432908 68 + . . scaffold1750 TRF Tandem_Repeat 449465 449500 72 + . . scaffold1750 TRF Tandem_Repeat 459664 459691 56 + . . scaffold1750 GLEAN mRNA 464250 467647 0.998726 - . ID=CGI_10021492; scaffold1750 GLEAN promoter 467648 468647 0.998726 - . ID=CGI_10021492; scaffold1750 TRF Tandem_Repeat 468030 468062 66 + . . scaffold1750 TRF Tandem_Repeat 468203 468240 76 + . . scaffold1750 TRF Tandem_Repeat 468949 469017 93 + . . scaffold1750 WUBlastX DNA_Academ 470883 471641 83 + . . scaffold1750 WUBlastX DNA_Academ 471581 472057 177 + . . scaffold1750 TRF Tandem_Repeat 473946 473976 53 + . . scaffold1750 TRF Tandem_Repeat 480214 480260 94 + . . scaffold1750 GLEAN promoter 486158 487157 1 + . ID=CGI_10021493; scaffold1750 GLEAN mRNA 487158 488378 1 + . ID=CGI_10021493; scaffold1750 WUBlastX LINE_RTE-X 492031 492321 62 + . . scaffold1750 WUBlastX LINE_RTE-X 492414 492536 30 + . . scaffold1750 TRF Tandem_Repeat 499176 499263 176 + . . scaffold1750 TRF Tandem_Repeat 500738 500783 83 + . . scaffold1750 GLEAN mRNA 501003 509671 0.984774 - . ID=CGI_10021494; scaffold1750 TRF Tandem_Repeat 508348 508387 71 + . . scaffold1750 TRF Tandem_Repeat 509049 509120 69 + . . scaffold1750 TRF Tandem_Repeat 509051 509125 66 + . . scaffold1750 GLEAN promoter 509672 510671 0.984774 - . ID=CGI_10021494; scaffold1750 TRF Tandem_Repeat 510607 510666 66 + . . scaffold1750 TRF Tandem_Repeat 510607 510666 84 + . . scaffold1750 TRF Tandem_Repeat 511571 511630 68 + . . scaffold1750 TRF Tandem_Repeat 515039 515096 116 + . . scaffold1750 TRF Tandem_Repeat 515512 515571 120 + . . scaffold1750 TRF Tandem_Repeat 518014 518067 92 + . . scaffold1750 GLEAN mRNA 519469 525455 0.89824 - . ID=CGI_10021495; scaffold1750 TRF Tandem_Repeat 520941 521196 494 + . . scaffold1750 TRF Tandem_Repeat 523546 524827 1688 + . . scaffold1750 GLEAN promoter 525456 526455 0.89824 - . ID=CGI_10021495; scaffold1750 TRF Tandem_Repeat 526314 526531 355 + . . scaffold1750 TRF Tandem_Repeat 535280 535333 74 + . . scaffold1750 GLEAN mRNA 537204 540518 0.407065 - . ID=CGI_10021496; scaffold1750 GLEAN promoter 540519 541518 0.407065 - . ID=CGI_10021496; scaffold1750 GLEAN mRNA 542986 547754 1 - . ID=CGI_10021497; scaffold1750 TRF Tandem_Repeat 544990 545051 124 + . . scaffold1750 TRF Tandem_Repeat 545049 545083 70 + . . scaffold1750 GLEAN promoter 547755 548754 1 - . ID=CGI_10021497; scaffold1750 WUBlastX LTR_Pao 554610 556721 1035 - . . scaffold1750 WUBlastX LTR_Pao 556721 557119 228 - . . scaffold1750 WUBlastX LTR_DIRS 557486 557746 80 - . . scaffold1750 WUBlastX LTR_DIRS 557537 557755 94 - . . scaffold1750 WUBlastX LTR_DIRS 557760 558521 74 - . . scaffold1750 WUBlastX LTR_DIRS 557934 558458 204 - . . scaffold1750 WUBlastX LTR_DIRS 558353 559111 235 - . . scaffold1750 WUBlastX LTR_DIRS 558512 559111 236 - . . scaffold1750 WUBlastX LTR_DIRS 559091 560161 611 - . . scaffold1750 WUBlastX LTR_Gypsy 560103 560315 20 - . . scaffold1750 GLEAN mRNA 560254 561945 0.999999 - . ID=CGI_10021498; scaffold1750 WUBlastX LTR_Pao 561472 561603 20 - . . scaffold1750 GLEAN promoter 561946 562945 0.999999 - . ID=CGI_10021498; scaffold1750 WUBlastX LTR_Pao 562113 562427 46 - . . scaffold1750 WUBlastX LTR_Pao 562188 562418 167 - . . scaffold1750 WUBlastX LTR_Pao 562385 564151 764 - . . scaffold1750 WUBlastX LTR_Gypsy 564522 564962 49 - . . scaffold1750 WUBlastX LTR_Gypsy 564618 564857 67 - . . scaffold1750 WUBlastX LTR_Gypsy 564893 565081 60 - . . scaffold1750 TRF Tandem_Repeat 570882 570946 112 + . . scaffold1750 TRF Tandem_Repeat 576347 576412 96 + . . scaffold1750 WUBlastX LINE_Penelope 577930 578325 35 + . . scaffold1750 WUBlastX LINE_Penelope 577993 578325 56 + . . scaffold1750 WUBlastX DNA_TcMar-Tc1 581865 582851 356 + . . scaffold1750 TRF Tandem_Repeat 587719 587771 106 + . . scaffold1750 WUBlastX LINE_L1-Tx1 594260 595474 161 - . . scaffold1750 WUBlastX LINE_L1-Tx1 595118 595672 49 - . . scaffold1750 WUBlastX LINE_Penelope 599348 599500 71 - . . scaffold1750 WUBlastX LINE_Penelope 599477 599611 77 + . . scaffold1750 WUBlastX LINE_Penelope 599498 599611 81 + . . scaffold1750 WUBlastX DNA_TcMar-Tc1 600001 601011 519 - . . scaffold1750 WUBlastX DNA_TcMar-Marin 600886 601041 35 - . . scaffold1750 WUBlastX LINE_Penelope 603420 604256 197 + . . scaffold1750 WUBlastX LINE_Penelope 604089 604838 79 + . . scaffold1750 WUBlastX LINE_Penelope 604428 604826 87 + . . scaffold1750 TRF Tandem_Repeat 607387 607434 96 + . . scaffold1750 TRF Tandem_Repeat 611267 611305 51 + . . scaffold1750 TRF Tandem_Repeat 614603 614670 136 + . . scaffold1750 WUBlastX RC_Helitron 617022 617105 25 + . . scaffold1750 WUBlastX RC_Helitron 617111 617764 280 + . . scaffold1750 GLEAN promoter 617365 618364 0.991783 + . ID=CGI_10021499; scaffold1750 GLEAN mRNA 618365 630830 0.991783 + . ID=CGI_10021499; scaffold1750 WUBlastX LTR_Pao 618407 619150 29 + . . scaffold1750 WUBlastX LTR_Pao 618746 621442 965 + . . scaffold1750 WUBlastX LTR_Pao 619346 621433 1051 + . . scaffold1750 WUBlastX LTR_Pao 621436 621780 318 + . . scaffold1750 WUBlastX LTR_Pao 621779 622255 374 + . . scaffold1750 WUBlastX LTR_Pao 621779 622342 310 + . . scaffold1750 WUBlastX LTR_Pao 623235 623312 36 + . . scaffold1750 WUBlastX LTR_Pao 623305 625314 1514 + . . scaffold1750 TRF Tandem_Repeat 627366 628111 1199 + . . scaffold1750 GLEAN mRNA 628942 643981 0.728195 - . ID=CGI_10021500; scaffold1750 TRF Tandem_Repeat 631031 631135 86 + . . scaffold1750 TRF Tandem_Repeat 631039 631134 97 + . . scaffold1750 TRF Tandem_Repeat 631039 631122 84 + . . scaffold1750 WUBlastX LTR_Pao 633565 633705 29 + . . scaffold1750 WUBlastX LTR_Pao 633604 633843 27 + . . scaffold1750 WUBlastX LTR_Pao 634133 634309 36 + . . scaffold1750 WUBlastX LTR_Pao 634133 634423 32 + . . scaffold1750 WUBlastX LTR_Pao 634464 635846 528 + . . scaffold1750 WUBlastX LTR_Pao 635858 636439 359 + . . scaffold1750 WUBlastX LTR_Pao 636442 636777 150 + . . scaffold1750 WUBlastX LTR_Pao 636496 636777 216 + . . scaffold1750 WUBlastX LTR_Pao 636768 637001 134 + . . scaffold1750 WUBlastX LTR_Pao 636768 637082 126 + . . scaffold1750 WUBlastX LTR_Pao 637025 637318 113 + . . scaffold1750 WUBlastX LTR_Pao 637254 637748 219 + . . scaffold1750 WUBlastX LTR_Pao 637314 637829 174 + . . scaffold1750 WUBlastX LTR_Pao 637338 637748 254 + . . scaffold1750 WUBlastX LTR_Pao 637807 638235 61 + . . scaffold1750 WUBlastX LTR_Pao 637807 638106 87 + . . scaffold1750 TRF Tandem_Repeat 641947 642063 100 + . . scaffold1750 GLEAN promoter 643982 644981 0.728195 - . ID=CGI_10021500; scaffold1750 WUBlastX LINE_L1 646259 646651 93 + . . scaffold1750 WUBlastX LINE_L1-Tx1 646481 646663 118 + . . scaffold1750 WUBlastX LINE_L1 646680 646895 123 + . . scaffold1750 WUBlastX LINE_RTE-BovB 646860 646976 20 + . . scaffold1750 WUBlastX LINE_RTE-X 646988 647458 146 + . . scaffold1750 WUBlastX LINE_RTE-X 647111 647431 156 + . . scaffold1750 WUBlastX LINE_RTE-X 647470 648993 64 + . . scaffold1750 WUBlastX LINE_RTE-X 647479 647676 91 + . . scaffold1750 WUBlastX LINE_RTE-X 647503 647712 82 + . . scaffold1750 WUBlastX LINE_RTE-X 648151 648921 119 + . . scaffold1750 WUBlastX LINE_RTE-X 648619 648921 174 + . . scaffold1750 WUBlastX LINE_RTE-X 648619 648990 151 + . . scaffold1750 WUBlastX LINE_RTE-X 648918 649691 103 + . . scaffold1750 WUBlastX LINE_RTE-X 649389 649769 56 + . . scaffold1750 WUBlastX LINE_RTE-X 650880 651218 49 + . . scaffold1750 WUBlastX LINE_RTE-X 650955 651056 52 + . . scaffold1750 WUBlastX LINE_RTE-X 650961 651224 49 + . . scaffold1750 WUBlastX LINE_L1-Tx1 669588 669797 29 + . . scaffold1750 WUBlastX LINE_L1 669905 670099 55 + . . scaffold1750 WUBlastX LINE_L1-Tx1 670083 670604 39 + . . scaffold1750 WUBlastX LINE_L1 670179 670610 59 + . . scaffold1750 WUBlastX LINE_L1 670470 670610 67 + . . scaffold1750 WUBlastX LINE_L1-Tx1 670488 670664 56 + . . scaffold1750 TRF Tandem_Repeat 673203 673260 116 + . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 677254 677457 168 - . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 677427 678710 961 - . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 678732 679148 186 - . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 678849 679157 254 - . . scaffold1750 WUBlastX LTR_Gypsy-Troyk 679096 679779 235 - . . scaffold1750 GLEAN mRNA 679453 687752 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX DNA_Harbinger 680067 680525 101 + . . scaffold1750 WUBlastX DNA_Harbinger 680097 680465 160 + . . scaffold1750 WUBlastX DNA_Harbinger 681127 681240 116 + . . scaffold1750 WUBlastX DNA_Harbinger 681127 681345 59 + . . scaffold1750 WUBlastX DNA_Harbinger 681366 681491 43 + . . scaffold1750 WUBlastX DNA_Harbinger 681387 681512 61 + . . scaffold1750 WUBlastX DNA_Harbinger 681648 681761 54 + . . scaffold1750 WUBlastX DNA_Harbinger 682032 682157 83 + . . scaffold1750 WUBlastX DNA_Harbinger 686277 686450 48 - . . scaffold1750 GLEAN promoter 687753 688752 0.873959 - . ID=CGI_10021501; scaffold1750 WUBlastX LTR_Gypsy-Troyk 688084 688629 297 - . . scaffold1750 WUBlastX LTR_Gypsy 688234 689337 406 - . . scaffold1750 GLEAN mRNA 688402 691316 0.700377 - . ID=CGI_10021502; scaffold1750 WUBlastX LTR_Gypsy-Troyk 688423 689343 547 - . . scaffold1750 TRF Tandem_Repeat 689959 690118 135 + . . scaffold1750 GLEAN promoter 691317 692316 0.700377 - . ID=CGI_10021502; scaffold1750 TRF Tandem_Repeat 692238 692388 158 + . . scaffold1750 TRF Tandem_Repeat 692238 692343 86 + . . scaffold1750 TRF Tandem_Repeat 692241 692388 156 + . . scaffold1750 TRF Tandem_Repeat 692249 692382 119 + . . scaffold1751 GLEAN mRNA 1921 19795 0.705782 - . ID=CGI_10010082; scaffold1751 WUBlastX DNA_hAT-Blackja 11501 11800 83 - . . scaffold1751 TRF Tandem_Repeat 15214 15248 70 + . . scaffold1751 WUBlastX LINE_RTE-X 15673 15969 27 + . . scaffold1751 WUBlastX LINE_RTE-X 15712 16134 24 + . . scaffold1751 WUBlastX LINE_RTE-X 15727 15996 40 + . . scaffold1751 GLEAN promoter 19796 20795 0.705782 - . ID=CGI_10010082; scaffold1751 TRF Tandem_Repeat 21425 22278 1397 + . . scaffold1751 TRF Tandem_Repeat 28414 28751 523 + . . scaffold1751 TRF Tandem_Repeat 32333 32399 134 + . . scaffold1751 TRF Tandem_Repeat 32417 32441 50 + . . scaffold1751 TRF Tandem_Repeat 38976 39032 114 + . . scaffold1751 TRF Tandem_Repeat 40307 40362 105 + . . scaffold1751 GLEAN mRNA 41239 41463 0.999372 - . ID=CGI_10010083; scaffold1751 GLEAN promoter 41464 42463 0.999372 - . ID=CGI_10010083; scaffold1751 TRF Tandem_Repeat 50333 50363 62 + . . scaffold1751 TRF Tandem_Repeat 51082 51127 92 + . . scaffold1751 TRF Tandem_Repeat 56510 56609 182 + . . scaffold1751 GLEAN mRNA 56937 57182 1 - . ID=CGI_10010084; scaffold1751 GLEAN promoter 57183 58182 1 - . ID=CGI_10010084; scaffold1751 TRF Tandem_Repeat 64532 64577 92 + . . scaffold1751 TRF Tandem_Repeat 67033 67108 152 + . . scaffold1751 GLEAN promoter 71389 72388 1 + . ID=CGI_10010085; scaffold1751 GLEAN mRNA 72389 73372 1 + . ID=CGI_10010085; scaffold1751 TRF Tandem_Repeat 78931 78988 116 + . . scaffold1751 TRF Tandem_Repeat 79499 79534 72 + . . scaffold1751 TRF Tandem_Repeat 79562 79612 102 + . . scaffold1751 TRF Tandem_Repeat 81355 81405 102 + . . scaffold1751 TRF Tandem_Repeat 91446 91726 287 + . . scaffold1751 TRF Tandem_Repeat 91446 91833 480 + . . scaffold1751 TRF Tandem_Repeat 91458 91510 52 + . . scaffold1751 TRF Tandem_Repeat 91495 91774 338 + . . scaffold1751 TRF Tandem_Repeat 91536 91828 247 + . . scaffold1751 TRF Tandem_Repeat 98590 98627 62 + . . scaffold1751 TRF Tandem_Repeat 110283 110324 84 + . . scaffold1751 TRF Tandem_Repeat 118541 118577 74 + . . scaffold1751 TRF Tandem_Repeat 120926 120967 84 + . . scaffold1751 TRF Tandem_Repeat 123077 123121 90 + . . scaffold1751 TRF Tandem_Repeat 124368 124405 76 + . . scaffold1751 TRF Tandem_Repeat 125585 125678 156 + . . scaffold1751 TRF Tandem_Repeat 128925 128976 104 + . . scaffold1751 GLEAN promoter 128971 129970 0.480294 + . ID=CGI_10010086; scaffold1751 GLEAN mRNA 129971 132954 0.480294 + . ID=CGI_10010086; scaffold1751 GLEAN mRNA 135432 144805 0.948184 - . ID=CGI_10010087; scaffold1751 GLEAN promoter 144806 145805 0.948184 - . ID=CGI_10010087; scaffold1751 GLEAN promoter 146056 147055 0.999675 + . ID=CGI_10010088; scaffold1751 GLEAN mRNA 147056 157734 0.999675 + . ID=CGI_10010088; scaffold1751 TRF Tandem_Repeat 156250 156287 76 + . . scaffold1751 GLEAN mRNA 157257 174365 0.975374 - . ID=CGI_10010089; scaffold1751 TRF Tandem_Repeat 158896 158926 62 + . . scaffold1751 TRF Tandem_Repeat 173331 173479 67 + . . scaffold1751 GLEAN promoter 174366 175365 0.975374 - . ID=CGI_10010089; scaffold1751 WUBlastX LTR_Gypsy 174781 175161 119 - . . scaffold1751 WUBlastX LTR_Gypsy 174784 175104 146 - . . scaffold1751 WUBlastX LTR_Gypsy 175104 175187 21 - . . scaffold1751 WUBlastX LTR_Gypsy 175178 175279 38 - . . scaffold1751 TRF Tandem_Repeat 180032 180089 89 + . . scaffold1751 GLEAN mRNA 191270 197474 0.992999 - . ID=CGI_10010090; scaffold1751 TRF Tandem_Repeat 197231 197258 56 + . . scaffold1751 GLEAN promoter 197475 198474 0.992999 - . ID=CGI_10010090; scaffold1751 TRF Tandem_Repeat 203849 203888 80 + . . scaffold1751 GLEAN promoter 205639 206638 1 + . ID=CGI_10010091; scaffold1751 GLEAN mRNA 206639 216481 1 + . ID=CGI_10010091; scaffold1751 TRF Tandem_Repeat 211518 211643 166 + . . scaffold1751 TRF Tandem_Repeat 217531 217583 97 + . . scaffold1751 GLEAN mRNA 237602 240287 0.990769 - . ID=CGI_10010092; scaffold1751 GLEAN promoter 240288 241287 0.990769 - . ID=CGI_10010092; scaffold1751 GLEAN mRNA 241951 249442 0.496175 - . ID=CGI_10010093; scaffold1751 TRF Tandem_Repeat 245446 245490 90 + . . scaffold1751 TRF Tandem_Repeat 249209 249248 71 + . . scaffold1751 GLEAN promoter 249443 250442 0.496175 - . ID=CGI_10010093; scaffold1751 TRF Tandem_Repeat 252565 252613 98 + . . scaffold1752 GLEAN promoter 1711 2710 1 + . ID=CGI_10003564; scaffold1752 GLEAN mRNA 2711 6230 1 + . ID=CGI_10003564; scaffold1752 GLEAN mRNA 8754 18177 0.400064 - . ID=CGI_10003565; scaffold1752 GLEAN promoter 15055 16054 0.777485 + . ID=CGI_10003566; scaffold1752 GLEAN mRNA 16055 20494 0.777485 + . ID=CGI_10003566; scaffold1752 GLEAN promoter 18178 19177 0.400064 - . ID=CGI_10003565; scaffold1752 GLEAN mRNA 24991 25662 0.69447 - . ID=CGI_10003567; scaffold1752 GLEAN promoter 25663 26662 0.69447 - . ID=CGI_10003567; scaffold1752 GLEAN promoter 26123 27122 0.999998 + . ID=CGI_10003568; scaffold1752 GLEAN mRNA 27123 30653 0.999998 + . ID=CGI_10003568; scaffold1752 GLEAN mRNA 33437 33985 0.998274 - . ID=CGI_10003569; scaffold1752 GLEAN promoter 33986 34985 0.998274 - . ID=CGI_10003569; scaffold1752 GLEAN mRNA 60284 69312 1 - . ID=CGI_10003570; scaffold1752 GLEAN promoter 69313 70312 1 - . ID=CGI_10003570; scaffold1752 GLEAN mRNA 69673 75600 0.994842 - . ID=CGI_10003571; scaffold1752 GLEAN promoter 75601 76600 0.994842 - . ID=CGI_10003571; scaffold1753 GLEAN promoter 2299 3298 1 + . ID=CGI_10010799; scaffold1753 GLEAN mRNA 3299 9906 1 + . ID=CGI_10010799; scaffold1753 TRF Tandem_Repeat 7359 7428 88 + . . scaffold1753 TRF Tandem_Repeat 7623 8456 1271 + . . scaffold1753 GLEAN promoter 9129 10128 1 + . ID=CGI_10010800; scaffold1753 GLEAN mRNA 10129 10646 1 + . ID=CGI_10010800; scaffold1753 WUBlastX DNA_Crypton 12370 12552 47 - . . scaffold1753 TRF Tandem_Repeat 28797 29002 367 + . . scaffold1753 WUBlastX LINE_L1-Tx1 29409 29621 70 - . . scaffold1753 WUBlastX LTR_Gypsy 29623 29853 20 + . . scaffold1753 WUBlastX LTR_Gypsy 29659 29838 44 + . . scaffold1753 WUBlastX LTR_Gypsy-Cigr 29970 30101 26 + . . scaffold1753 WUBlastX LTR_Gypsy 30007 30543 48 + . . scaffold1753 WUBlastX LTR_Gypsy 30130 30522 164 + . . scaffold1753 WUBlastX LTR_Gypsy-Cigr 30507 30761 226 + . . scaffold1753 WUBlastX LTR_Gypsy 30752 32377 1073 + . . scaffold1753 WUBlastX LTR_Gypsy 31925 32464 139 + . . scaffold1753 WUBlastX LTR_Gypsy 35121 35522 20 - . . scaffold1753 WUBlastX LINE_L1-Tx1 35507 36235 247 + . . scaffold1753 TRF Tandem_Repeat 40584 40625 52 + . . scaffold1753 TRF Tandem_Repeat 40916 41088 182 + . . scaffold1753 GLEAN promoter 40994 41993 0.999372 + . ID=CGI_10010801; scaffold1753 GLEAN promoter 41409 42408 0.996749 + . ID=CGI_10010802; scaffold1753 GLEAN mRNA 41994 42233 0.999372 + . ID=CGI_10010801; scaffold1753 GLEAN mRNA 42409 50828 0.996749 + . ID=CGI_10010802; scaffold1753 WUBlastX RC_Helitron 42602 43102 22 + . . scaffold1753 WUBlastX RC_Helitron 43160 44362 20 + . . scaffold1753 WUBlastX RC_Helitron 43757 43867 24 + . . scaffold1753 WUBlastX RC_Helitron 43799 44341 66 + . . scaffold1753 WUBlastX RC_Helitron 43904 44905 70 + . . scaffold1753 WUBlastX DNA_Helitron 44291 44905 131 + . . scaffold1753 TRF Tandem_Repeat 51499 52463 622 + . . scaffold1753 TRF Tandem_Repeat 60614 60647 50 + . . scaffold1753 TRF Tandem_Repeat 63798 63970 77 + . . scaffold1753 WUBlastX LTR_Gypsy-Cigr 65200 65505 86 + . . scaffold1753 WUBlastX LTR_Gypsy-Cigr 65468 65596 24 + . . scaffold1753 TRF Tandem_Repeat 75099 75201 145 + . . scaffold1753 GLEAN mRNA 76615 77434 1 - . ID=CGI_10010803; scaffold1753 GLEAN promoter 77435 78434 1 - . ID=CGI_10010803; scaffold1753 TRF Tandem_Repeat 85005 86302 1758 + . . scaffold1753 GLEAN promoter 86951 87950 0.922104 + . ID=CGI_10010804; scaffold1753 GLEAN mRNA 87951 95704 0.922104 + . ID=CGI_10010804; scaffold1753 TRF Tandem_Repeat 97288 97348 104 + . . scaffold1753 GLEAN promoter 105431 106430 1 + . ID=CGI_10010805; scaffold1753 GLEAN mRNA 106431 113943 1 + . ID=CGI_10010805; scaffold1753 TRF Tandem_Repeat 108411 108444 50 + . . scaffold1753 TRF Tandem_Repeat 108442 108490 62 + . . scaffold1753 TRF Tandem_Repeat 131601 131645 90 + . . scaffold1753 GLEAN promoter 143815 144814 0.791978 + . ID=CGI_10010806; scaffold1753 GLEAN mRNA 144815 149893 0.791978 + . ID=CGI_10010806; scaffold1753 TRF Tandem_Repeat 148310 148428 125 + . . scaffold1753 GLEAN mRNA 159154 186985 0.615229 - . ID=CGI_10010807; scaffold1753 TRF Tandem_Repeat 172185 172256 130 + . . scaffold1753 TRF Tandem_Repeat 173522 173719 157 + . . scaffold1753 TRF Tandem_Repeat 183102 183155 83 + . . scaffold1753 TRF Tandem_Repeat 185161 186447 1854 + . . scaffold1753 TRF Tandem_Repeat 186455 186517 74 + . . scaffold1753 GLEAN promoter 186986 187985 0.615229 - . ID=CGI_10010807; scaffold1753 TRF Tandem_Repeat 187218 187307 119 + . . scaffold1753 TRF Tandem_Repeat 190975 191036 88 + . . scaffold1753 TRF Tandem_Repeat 193940 193981 57 + . . scaffold1753 TRF Tandem_Repeat 193940 193994 74 + . . scaffold1753 TRF Tandem_Repeat 193943 193994 68 + . . scaffold1753 TRF Tandem_Repeat 202878 202916 69 + . . scaffold1753 TRF Tandem_Repeat 203034 203088 110 + . . scaffold1753 TRF Tandem_Repeat 205009 205058 100 + . . scaffold1753 GLEAN promoter 207514 208513 1 + . ID=CGI_10010808; scaffold1753 GLEAN mRNA 208514 209467 1 + . ID=CGI_10010808; scaffold1753 GLEAN mRNA 214334 228259 0.999735 - . ID=CGI_10010809; scaffold1753 GLEAN promoter 227883 228882 0.841405 + . ID=CGI_10010810; scaffold1753 GLEAN promoter 228260 229259 0.999735 - . ID=CGI_10010809; scaffold1753 GLEAN mRNA 228883 259778 0.841405 + . ID=CGI_10010810; scaffold1753 TRF Tandem_Repeat 233994 235386 1635 + . . scaffold1753 TRF Tandem_Repeat 233994 235423 1832 + . . scaffold1753 TRF Tandem_Repeat 240375 240411 74 + . . scaffold1753 TRF Tandem_Repeat 241276 241321 74 + . . scaffold1753 GLEAN mRNA 261922 275452 0.949513 - . ID=CGI_10010811; scaffold1753 WUBlastX LINE_L1-Tx1 265192 265581 55 - . . scaffold1753 WUBlastX LINE_L1-Tx1 265571 266425 41 - . . scaffold1753 WUBlastX LINE_L1-Tx1 266270 266428 50 - . . scaffold1753 WUBlastX LINE_L1-Tx1 266270 266488 46 - . . scaffold1753 WUBlastX LINE_L1-Tx1 266617 266784 51 - . . scaffold1753 WUBlastX LINE_L1 266781 266906 53 - . . scaffold1753 WUBlastX LINE_L1-Tx1 266805 267875 40 - . . scaffold1753 WUBlastX LINE_L1 266814 267389 85 - . . scaffold1753 TRF Tandem_Repeat 269566 269592 54 + . . scaffold1753 TRF Tandem_Repeat 272689 272728 80 + . . scaffold1753 GLEAN promoter 275453 275661 0.949513 - . ID=CGI_10010811; scaffold1754 TRF Tandem_Repeat 8434 8471 51 + . . scaffold1754 TRF Tandem_Repeat 47347 47388 68 + . . scaffold1754 TRF Tandem_Repeat 47348 47385 51 + . . scaffold1754 TRF Tandem_Repeat 53174 53215 84 + . . scaffold1754 TRF Tandem_Repeat 56288 56337 73 + . . scaffold1754 TRF Tandem_Repeat 56516 57726 890 + . . scaffold1754 TRF Tandem_Repeat 61602 61666 94 + . . scaffold1754 WUBlastX DNA_TcMar-Tc1 67942 68682 275 - . . scaffold1754 WUBlastX DNA_TcMar-Tc1 67978 68898 103 - . . scaffold1754 WUBlastX DNA_TcMar-Tc1 68738 68941 27 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71130 71252 30 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71166 71252 42 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71199 71285 37 - . . scaffold1754 WUBlastX DNA_TcMar-Tigge 71701 72105 38 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71791 72120 128 - . . scaffold1754 WUBlastX DNA_TcMar-Tc2 71869 72288 61 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 71881 72153 147 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 72146 72331 32 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 72618 72887 55 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 72642 72848 93 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 72915 73256 34 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 73032 73274 81 - . . scaffold1754 WUBlastX DNA_TcMar-Fot1 73038 73334 52 - . . scaffold1754 TRF Tandem_Repeat 98817 98879 67 + . . scaffold1754 WUBlastX LTR_Ngaro 107640 108605 320 - . . scaffold1754 WUBlastX LTR_Ngaro 108551 109240 528 - . . scaffold1754 WUBlastX LTR_Ngaro 109222 109977 464 - . . scaffold1754 WUBlastX LTR_Ngaro 110098 110517 38 - . . scaffold1754 WUBlastX LTR_Ngaro 110511 110804 138 - . . scaffold1754 TRF Tandem_Repeat 117735 117773 78 + . . scaffold1754 TRF Tandem_Repeat 119027 119064 76 + . . scaffold1754 WUBlastX LINE_RTE-BovB 119534 119659 80 + . . scaffold1754 GLEAN promoter 123608 124607 0.788238 + . ID=CGI_10009580; scaffold1754 GLEAN mRNA 124608 131066 0.788238 + . ID=CGI_10009580; scaffold1754 TRF Tandem_Repeat 127114 127151 76 + . . scaffold1754 TRF Tandem_Repeat 128240 128264 50 + . . scaffold1754 WUBlastX LINE_L1 128485 129000 126 + . . scaffold1754 WUBlastX LINE_L1 128608 129066 133 + . . scaffold1754 WUBlastX LINE_L1-Tx1 128611 129000 220 + . . scaffold1754 WUBlastX LINE_L1-Tx1 128991 129488 99 + . . scaffold1754 WUBlastX LINE_L1-Tx1 129491 130315 49 + . . scaffold1754 TRF Tandem_Repeat 130430 130481 104 + . . scaffold1754 GLEAN promoter 150736 151735 0.777606 + . ID=CGI_10009581; scaffold1754 TRF Tandem_Repeat 151299 151326 56 + . . scaffold1754 GLEAN mRNA 151736 154148 0.777606 + . ID=CGI_10009581; scaffold1754 TRF Tandem_Repeat 156074 156114 82 + . . scaffold1754 TRF Tandem_Repeat 156498 156547 66 + . . scaffold1754 WUBlastX LINE_L2 159335 159571 48 - . . scaffold1754 GLEAN mRNA 177404 188728 1 - . ID=CGI_10009582; scaffold1754 GLEAN promoter 181986 182985 0.985379 + . ID=CGI_10009583; scaffold1754 GLEAN mRNA 182986 198938 0.985379 + . ID=CGI_10009583; scaffold1754 TRF Tandem_Repeat 185525 185581 114 + . . scaffold1754 GLEAN promoter 188729 189728 1 - . ID=CGI_10009582; scaffold1754 TRF Tandem_Repeat 193894 193960 80 + . . scaffold1754 TRF Tandem_Repeat 199745 199787 59 + . . scaffold1754 TRF Tandem_Repeat 200755 200816 124 + . . scaffold1754 WUBlastX LTR_Gypsy 208038 208625 306 - . . scaffold1754 WUBlastX LTR_Gypsy 208173 208769 133 - . . scaffold1754 WUBlastX DNA_Helitron 211725 212102 70 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 212370 212810 22 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 212427 212693 28 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 213254 214165 55 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 213493 213738 65 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 213553 213714 81 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 213680 214144 133 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 213758 214399 299 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 214405 214713 120 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 214759 215142 133 + . . scaffold1754 WUBlastX DNA_hAT-Tip100 214879 215121 144 + . . scaffold1754 GLEAN promoter 215741 216740 0.492638 + . ID=CGI_10009584; scaffold1754 WUBlastX LTR_Gypsy 215796 218222 1737 + . . scaffold1754 GLEAN mRNA 216741 233286 0.492638 + . ID=CGI_10009584; scaffold1754 WUBlastX LTR_Gypsy 218225 219802 1302 + . . scaffold1754 WUBlastX LTR_Gypsy 218750 220096 138 + . . scaffold1754 TRF Tandem_Repeat 227611 227648 76 + . . scaffold1754 TRF Tandem_Repeat 233594 233641 96 + . . scaffold1755 TRF Tandem_Repeat 23232 23315 107 + . . scaffold1755 GLEAN promoter 29793 30792 1 + . ID=CGI_10002648; scaffold1755 GLEAN mRNA 30793 36083 1 + . ID=CGI_10002648; scaffold1755 WUBlastX LINE_Penelope 30963 31214 32 - . . scaffold1755 WUBlastX LINE_Penelope 32274 32687 124 - . . scaffold1755 TRF Tandem_Repeat 33114 33164 52 + . . scaffold1755 TRF Tandem_Repeat 33114 33166 74 + . . scaffold1755 TRF Tandem_Repeat 41332 41360 58 + . . scaffold1755 TRF Tandem_Repeat 48198 48429 338 + . . scaffold1755 TRF Tandem_Repeat 48198 48432 272 + . . scaffold1755 TRF Tandem_Repeat 49578 49644 134 + . . scaffold1756 GLEAN promoter 2442 3441 1 + . ID=CGI_10002807; scaffold1756 GLEAN mRNA 3442 9285 1 + . ID=CGI_10002807; scaffold1756 TRF Tandem_Repeat 4989 5016 56 + . . scaffold1756 WUBlastX LINE_RTE-BovB 13634 13879 37 + . . scaffold1756 WUBlastX LINE_RTE-X 13679 13960 132 + . . scaffold1756 WUBlastX LINE_RTE-X 13795 15132 169 + . . scaffold1756 WUBlastX LINE_RTE-X 13819 14355 184 + . . scaffold1756 WUBlastX LINE_RTE-X 13885 14331 255 + . . scaffold1756 WUBlastX LINE_RTE-X 14818 15336 116 + . . scaffold1756 GLEAN mRNA 17114 17893 0.999991 - . ID=CGI_10002808; scaffold1756 GLEAN promoter 17894 18893 0.999991 - . ID=CGI_10002808; scaffold1757 GLEAN mRNA 4841 24520 0.995772 - . ID=CGI_10005111; scaffold1757 TRF Tandem_Repeat 14608 14948 610 + . . scaffold1757 GLEAN promoter 24521 25520 0.995772 - . ID=CGI_10005111; scaffold1757 TRF Tandem_Repeat 37387 37437 84 + . . scaffold1757 GLEAN mRNA 39979 43464 0.907643 - . ID=CGI_10005112; scaffold1757 WUBlastX DNA_Academ 42988 43506 292 - . . scaffold1757 GLEAN promoter 43465 44464 0.907643 - . ID=CGI_10005112; scaffold1757 GLEAN mRNA 43472 43939 0.579796 - . ID=CGI_10005113; scaffold1757 WUBlastX DNA_Academ 43478 43816 47 - . . scaffold1757 WUBlastX DNA_Academ 43493 43762 58 - . . scaffold1757 GLEAN promoter 43940 44939 0.579796 - . ID=CGI_10005113; scaffold1757 WUBlastX LINE_RTE-X 51433 52395 177 + . . scaffold1757 WUBlastX LINE_RTE-X 51676 52395 231 + . . scaffold1757 WUBlastX LINE_RTE-X 52401 53918 643 + . . scaffold1757 WUBlastX LINE_RTE-X 53172 54062 145 + . . scaffold1757 GLEAN mRNA 75249 81683 0.612442 - . ID=CGI_10005114; scaffold1757 TRF Tandem_Repeat 77281 77310 51 + . . scaffold1757 TRF Tandem_Repeat 77312 77376 85 + . . scaffold1757 GLEAN promoter 81684 82683 0.612442 - . ID=CGI_10005114; scaffold1757 WUBlastX LINE_Penelope 91073 91150 44 - . . scaffold1757 WUBlastX LINE_Penelope 91073 91186 31 - . . scaffold1757 WUBlastX LINE_Penelope 91403 91444 25 - . . scaffold1757 WUBlastX LINE_Penelope 91428 91520 40 - . . scaffold1757 WUBlastX LINE_Penelope 91583 91804 24 - . . scaffold1757 WUBlastX LINE_Penelope 91712 91864 39 - . . scaffold1757 GLEAN mRNA 96677 101781 1 - . ID=CGI_10005115; scaffold1757 GLEAN promoter 101782 102781 1 - . ID=CGI_10005115; scaffold1757 GLEAN mRNA 105877 113443 0.518009 - . ID=CGI_10005116; scaffold1757 GLEAN promoter 113444 114443 0.518009 - . ID=CGI_10005116; scaffold1757 WUBlastX LTR_DIRS 115627 116259 67 + . . scaffold1757 WUBlastX LTR_DIRS 115738 116478 161 + . . scaffold1757 WUBlastX LTR_DIRS 115909 116688 125 + . . scaffold1757 WUBlastX LTR_DIRS 116753 117151 70 + . . scaffold1757 GLEAN promoter 116867 117866 0.448271 + . ID=CGI_10005117; scaffold1757 GLEAN mRNA 117867 118082 0.448271 + . ID=CGI_10005117; scaffold1758 GLEAN mRNA 3640 11419 1 - . ID=CGI_10007059; scaffold1758 GLEAN promoter 10397 11396 0.999955 + . ID=CGI_10007060; scaffold1758 GLEAN mRNA 11397 20838 0.999955 + . ID=CGI_10007060; scaffold1758 GLEAN promoter 11420 12419 1 - . ID=CGI_10007059; scaffold1758 TRF Tandem_Repeat 13264 13316 106 + . . scaffold1758 TRF Tandem_Repeat 18497 18802 167 + . . scaffold1758 TRF Tandem_Repeat 19362 19432 70 + . . scaffold1758 WUBlastX LINE_L1 54191 54637 43 + . . scaffold1758 WUBlastX LINE_L1-Tx1 54251 54610 73 + . . scaffold1758 WUBlastX LINE_L1-Tx1 55596 56231 480 + . . scaffold1758 WUBlastX LINE_L1-Tx1 56250 57260 402 + . . scaffold1758 WUBlastX LINE_L1-Tx1 57233 57955 93 + . . scaffold1758 WUBlastX LINE_L1-Tx1 57383 57955 114 + . . scaffold1758 TRF Tandem_Repeat 57993 58040 62 + . . scaffold1758 WUBlastX LINE_L1-Tx1 58805 59140 40 + . . scaffold1758 WUBlastX LINE_L1-Tx1 58868 59143 49 + . . scaffold1758 TRF Tandem_Repeat 62418 62459 68 + . . scaffold1758 TRF Tandem_Repeat 69415 69452 76 + . . scaffold1758 GLEAN promoter 69468 70467 0.748948 + . ID=CGI_10007061; scaffold1758 GLEAN mRNA 70468 87746 0.748948 + . ID=CGI_10007061; scaffold1758 TRF Tandem_Repeat 70617 70678 56 + . . scaffold1758 TRF Tandem_Repeat 70617 70652 72 + . . scaffold1758 TRF Tandem_Repeat 70654 70706 61 + . . scaffold1758 TRF Tandem_Repeat 87700 88033 335 + . . scaffold1758 GLEAN mRNA 108587 119815 0.999352 - . ID=CGI_10007062; scaffold1758 TRF Tandem_Repeat 113004 113053 55 + . . scaffold1758 GLEAN promoter 119816 120815 0.999352 - . ID=CGI_10007062; scaffold1758 GLEAN promoter 123882 124881 0.791435 + . ID=CGI_10007063; scaffold1758 GLEAN mRNA 124882 125994 0.791435 + . ID=CGI_10007063; scaffold1758 WUBlastX LTR_Gypsy 125338 125466 24 + . . scaffold1758 WUBlastX LTR_Ngaro 126024 127535 431 + . . scaffold1758 WUBlastX LTR_Ngaro 126270 127607 765 + . . scaffold1758 WUBlastX LTR_DIRS 127606 127719 24 + . . scaffold1758 WUBlastX LTR_Ngaro 127648 128346 110 + . . scaffold1758 WUBlastX LTR_Ngaro 128072 128506 145 + . . scaffold1758 GLEAN mRNA 132169 136900 0.998023 - . ID=CGI_10007064; scaffold1758 GLEAN promoter 136901 137900 0.998023 - . ID=CGI_10007064; scaffold1758 WUBlastX LINE_L1 147709 147837 21 + . . scaffold1758 WUBlastX LINE_L1-Tx1 148175 148537 27 + . . scaffold1758 WUBlastX LINE_L1-Tx1 148355 148522 44 + . . scaffold1758 WUBlastX LINE_L1 148406 148570 68 + . . scaffold1758 WUBlastX LINE_L1-Tx1 148406 148537 103 + . . scaffold1758 WUBlastX LINE_L1-Tx1 148610 148819 108 + . . scaffold1758 WUBlastX LINE_L1-Tx1 149026 150831 515 + . . scaffold1758 WUBlastX LINE_RTE-X 164090 164272 69 - . . scaffold1758 WUBlastX LINE_RTE-X 164102 164338 38 - . . scaffold1759 TRF Tandem_Repeat 857 945 137 + . . scaffold1759 GLEAN promoter 7035 8034 0.82455 + . ID=CGI_10010903; scaffold1759 GLEAN mRNA 8035 23595 0.82455 + . ID=CGI_10010903; scaffold1759 WUBlastX DNA_TcMar-Fot1 29380 29676 37 + . . scaffold1759 WUBlastX DNA_TcMar-Fot1 29473 29757 50 + . . scaffold1759 WUBlastX DNA_TcMar-Fot1 29613 30563 220 + . . scaffold1759 WUBlastX DNA_TcMar-Fot1 29778 30647 296 + . . scaffold1759 WUBlastX LTR_Pao 31026 31247 28 + . . scaffold1759 WUBlastX LTR_Pao 32194 33798 396 + . . scaffold1759 WUBlastX LTR_Pao 32590 33798 468 + . . scaffold1759 WUBlastX LTR_Pao 33788 37465 2497 + . . scaffold1759 WUBlastX LTR_Pao 37473 37757 223 + . . scaffold1759 WUBlastX LINE_I 42641 42874 67 + . . scaffold1759 WUBlastX LINE_RTE-X 42713 43660 184 + . . scaffold1759 WUBlastX LINE_RTE-X 43244 43888 50 + . . scaffold1759 WUBlastX LINE_RTE-X 43250 43741 92 + . . scaffold1759 WUBlastX LINE_RTE-X 44913 46460 723 + . . scaffold1759 WUBlastX LINE_RTE-X 46487 47047 22 + . . scaffold1759 WUBlastX LINE_RTE-X 46514 46924 72 + . . scaffold1759 WUBlastX LTR_ERV1 49066 49641 23 + . . scaffold1759 WUBlastX LTR_Gypsy 49210 49656 69 + . . scaffold1759 WUBlastX LTR_Gypsy 49279 50049 387 + . . scaffold1759 WUBlastX LTR_Gypsy 49333 50250 90 + . . scaffold1759 WUBlastX LTR_Gypsy 50344 50466 29 + . . scaffold1759 WUBlastX LTR_Gypsy 50375 53437 2559 + . . scaffold1759 WUBlastX LTR_Gypsy 53433 54209 522 + . . scaffold1759 GLEAN promoter 55150 56149 0.999999 + . ID=CGI_10010905; scaffold1759 GLEAN mRNA 56150 76801 0.999999 + . ID=CGI_10010905; scaffold1759 WUBlastX LINE_RTE-X 76970 77392 123 + . . scaffold1759 WUBlastX LINE_RTE-X 77093 77395 168 + . . scaffold1759 WUBlastX LINE_RTE-X 77395 77502 69 + . . scaffold1759 WUBlastX LINE_RTE-X 77504 77659 74 + . . scaffold1759 GLEAN promoter 82905 83904 0.889634 + . ID=CGI_10010906; scaffold1759 GLEAN mRNA 83905 106418 0.889634 + . ID=CGI_10010906; scaffold1759 TRF Tandem_Repeat 86053 86176 78 + . . scaffold1759 TRF Tandem_Repeat 88854 88892 78 + . . scaffold1759 TRF Tandem_Repeat 94776 94813 76 + . . scaffold1759 WUBlastX LTR_Gypsy 96653 96700 20 + . . scaffold1759 TRF Tandem_Repeat 98562 98631 79 + . . scaffold1759 TRF Tandem_Repeat 100334 101228 1091 + . . scaffold1759 WUBlastX LTR_Gypsy 102041 102268 26 + . . scaffold1759 WUBlastX LTR_Gypsy 102996 103109 31 + . . scaffold1759 TRF Tandem_Repeat 109493 109572 58 + . . scaffold1759 TRF Tandem_Repeat 109779 109877 74 + . . scaffold1759 TRF Tandem_Repeat 109831 109886 58 + . . scaffold1759 GLEAN promoter 112107 113106 0.911601 + . ID=CGI_10010907; scaffold1759 TRF Tandem_Repeat 113035 113075 82 + . . scaffold1759 GLEAN mRNA 113107 118313 0.911601 + . ID=CGI_10010907; scaffold1759 TRF Tandem_Repeat 114302 114411 62 + . . scaffold1759 TRF Tandem_Repeat 117235 117349 72 + . . scaffold1759 TRF Tandem_Repeat 117451 117506 112 + . . scaffold1759 TRF Tandem_Repeat 120485 120514 60 + . . scaffold1759 TRF Tandem_Repeat 121882 121921 71 + . . scaffold1759 TRF Tandem_Repeat 123684 123736 79 + . . scaffold1759 TRF Tandem_Repeat 126119 126157 78 + . . scaffold1759 TRF Tandem_Repeat 126339 126382 52 + . . scaffold1759 TRF Tandem_Repeat 126343 126373 62 + . . scaffold1759 TRF Tandem_Repeat 126877 126943 98 + . . scaffold1759 TRF Tandem_Repeat 130090 130200 159 + . . scaffold1759 WUBlastX DNA_Sola 162607 162702 36 + . . scaffold1759 WUBlastX DNA_Sola 162607 162756 31 + . . scaffold1759 WUBlastX DNA_Sola 163011 163664 121 + . . scaffold1759 WUBlastX DNA_Sola 163026 163565 133 + . . scaffold1759 TRF Tandem_Repeat 178944 178990 85 + . . scaffold1759 WUBlastX LINE_Penelope 186515 186862 88 - . . scaffold1759 WUBlastX LINE_Penelope 186530 186820 146 - . . scaffold1759 WUBlastX LINE_Penelope 186872 186985 43 + . . scaffold1759 WUBlastX LINE_Penelope 186981 188615 938 + . . scaffold1759 TRF Tandem_Repeat 195137 195195 91 + . . scaffold1759 TRF Tandem_Repeat 202034 202136 66 + . . scaffold1759 TRF Tandem_Repeat 202123 202186 58 + . . scaffold1759 TRF Tandem_Repeat 202123 202209 77 + . . scaffold1759 TRF Tandem_Repeat 203173 203217 90 + . . scaffold1759 TRF Tandem_Repeat 204937 205024 94 + . . scaffold1759 TRF Tandem_Repeat 205096 205156 50 + . . scaffold1759 WUBlastX DNA_Helitron 214965 216281 293 + . . scaffold1759 WUBlastX DNA_Helitron 215730 216848 335 + . . scaffold1759 WUBlastX RC_Helitron 216393 217163 176 + . . scaffold1759 TRF Tandem_Repeat 242891 243639 1173 + . . scaffold1759 TRF Tandem_Repeat 243809 243858 66 + . . scaffold1759 WUBlastX LTR_Gypsy 244072 246645 1135 - . . scaffold1759 WUBlastX LTR_Gypsy 244561 248388 2201 - . . scaffold1759 GLEAN mRNA 248504 248677 0.999951 - . ID=CGI_10010908; scaffold1759 GLEAN promoter 248678 249677 0.999951 - . ID=CGI_10010908; scaffold1759 WUBlastX LTR_Gypsy 248761 249411 73 - . . scaffold1759 WUBlastX LTR_Gypsy 248962 249375 105 - . . scaffold1759 WUBlastX LTR_Gypsy 248998 249342 110 - . . scaffold1759 TRF Tandem_Repeat 254390 254472 157 + . . scaffold1759 TRF Tandem_Repeat 265475 265701 233 + . . scaffold1759 GLEAN mRNA 267969 268442 0.618186 - . ID=CGI_10010909; scaffold1759 GLEAN promoter 268443 269442 0.618186 - . ID=CGI_10010909; scaffold1759 TRF Tandem_Repeat 273151 273188 60 + . . scaffold1759 GLEAN mRNA 274461 276122 0.999372 - . ID=CGI_10010910; scaffold1759 GLEAN promoter 276123 277122 0.999372 - . ID=CGI_10010910; scaffold1759 TRF Tandem_Repeat 278461 278609 86 + . . scaffold1759 TRF Tandem_Repeat 278525 278671 64 + . . scaffold1760 TRF Tandem_Repeat 3023 4038 1451 + . . scaffold1760 TRF Tandem_Repeat 4168 4217 100 + . . scaffold1760 TRF Tandem_Repeat 6372 7199 1089 + . . scaffold1760 TRF Tandem_Repeat 7206 7249 61 + . . scaffold1760 TRF Tandem_Repeat 7210 7248 69 + . . scaffold1760 GLEAN promoter 9471 10470 0.994763 + . ID=CGI_10002757; scaffold1760 GLEAN mRNA 10471 43998 0.994763 + . ID=CGI_10002757; scaffold1760 TRF Tandem_Repeat 14675 15869 1580 + . . scaffold1760 TRF Tandem_Repeat 14675 15869 1489 + . . scaffold1760 TRF Tandem_Repeat 14675 15869 1096 + . . scaffold1760 TRF Tandem_Repeat 20146 20966 947 + . . scaffold1760 TRF Tandem_Repeat 20146 20966 1104 + . . scaffold1760 TRF Tandem_Repeat 25393 25434 84 + . . scaffold1760 TRF Tandem_Repeat 32117 32169 106 + . . scaffold1760 WUBlastX LINE_L1-Tx1 35437 35811 72 + . . scaffold1760 WUBlastX LINE_L1-Tx1 35617 35811 81 + . . scaffold1760 GLEAN mRNA 45615 48316 0.999743 - . ID=CGI_10002758; scaffold1760 GLEAN promoter 48317 49316 0.999743 - . ID=CGI_10002758; scaffold1760 TRF Tandem_Repeat 53865 54669 1594 + . . scaffold1761 TRF Tandem_Repeat 2605 3314 588 + . . scaffold1761 TRF Tandem_Repeat 6047 6235 108 + . . scaffold1761 WUBlastX LTR_Gypsy 7538 7714 55 - . . scaffold1761 WUBlastX LTR_Gypsy 7754 8503 105 - . . scaffold1761 WUBlastX LTR_Gypsy-Cigr 8099 8503 134 - . . scaffold1761 WUBlastX LTR_Gypsy 8454 8636 68 - . . scaffold1761 WUBlastX LTR_Gypsy 8481 8723 25 - . . scaffold1761 WUBlastX LTR_Gypsy 8493 8669 36 - . . scaffold1761 WUBlastX LTR_Gypsy 8941 9189 28 - . . scaffold1761 TRF Tandem_Repeat 9903 9929 54 + . . scaffold1761 TRF Tandem_Repeat 10794 10823 60 + . . scaffold1761 TRF Tandem_Repeat 14429 15431 765 + . . scaffold1761 TRF Tandem_Repeat 14745 15562 760 + . . scaffold1761 TRF Tandem_Repeat 23641 24421 1046 + . . scaffold1761 WUBlastX RC_Helitron 29256 30014 102 + . . scaffold1761 WUBlastX DNA_Helitron 29385 30800 309 + . . scaffold1761 WUBlastX RC_Helitron 30099 32156 725 + . . scaffold1761 WUBlastX RC_Helitron 30711 36635 2992 + . . scaffold1761 TRF Tandem_Repeat 38806 40668 2786 + . . scaffold1761 WUBlastX RC_Helitron 48139 50664 1441 - . . scaffold1761 WUBlastX RC_Helitron 51062 51181 81 - . . scaffold1761 GLEAN promoter 60918 61917 0.591267 + . ID=CGI_10005532; scaffold1761 GLEAN mRNA 61918 62385 0.591267 + . ID=CGI_10005532; scaffold1761 WUBlastX RC_Helitron 64981 65373 27 + . . scaffold1761 TRF Tandem_Repeat 71174 71243 115 + . . scaffold1761 TRF Tandem_Repeat 72242 74189 2550 + . . scaffold1761 TRF Tandem_Repeat 72242 75141 3024 + . . scaffold1761 TRF Tandem_Repeat 72242 75141 3342 + . . scaffold1761 TRF Tandem_Repeat 74188 75141 1376 + . . scaffold1761 WUBlastX LINE_RTE-X 75476 75826 38 + . . scaffold1761 WUBlastX LINE_RTE-X 75479 75772 57 + . . scaffold1761 TRF Tandem_Repeat 78381 78427 85 + . . scaffold1761 TRF Tandem_Repeat 78611 78747 238 + . . scaffold1761 TRF Tandem_Repeat 80063 80133 124 + . . scaffold1761 TRF Tandem_Repeat 81822 81881 102 + . . scaffold1761 TRF Tandem_Repeat 82287 82826 307 + . . scaffold1761 TRF Tandem_Repeat 83368 83966 675 + . . scaffold1761 TRF Tandem_Repeat 83378 83959 641 + . . scaffold1761 TRF Tandem_Repeat 91290 91474 183 + . . scaffold1761 TRF Tandem_Repeat 92117 92313 225 + . . scaffold1761 GLEAN promoter 124646 125645 0.979614 + . ID=CGI_10005533; scaffold1761 TRF Tandem_Repeat 125489 125522 68 + . . scaffold1761 GLEAN mRNA 125646 126700 0.979614 + . ID=CGI_10005533; scaffold1761 TRF Tandem_Repeat 126763 126814 86 + . . scaffold1762 GLEAN promoter 6694 7693 0.999854 + . ID=CGI_10001352; scaffold1762 GLEAN mRNA 7694 14705 0.999854 + . ID=CGI_10001352; scaffold1763 GLEAN mRNA 702 16962 0.444448 - . ID=CGI_10019524; scaffold1763 TRF Tandem_Repeat 12539 12626 86 + . . scaffold1763 GLEAN promoter 14462 15461 1 + . ID=CGI_10019525; scaffold1763 GLEAN mRNA 15462 32808 1 + . ID=CGI_10019525; scaffold1763 GLEAN promoter 16963 17962 0.444448 - . ID=CGI_10019524; scaffold1763 GLEAN promoter 34717 35716 0.990076 + . ID=CGI_10019526; scaffold1763 GLEAN mRNA 35717 72266 0.990076 + . ID=CGI_10019526; scaffold1763 TRF Tandem_Repeat 39689 39752 67 + . . scaffold1763 TRF Tandem_Repeat 54969 55078 97 + . . scaffold1763 TRF Tandem_Repeat 57044 57078 61 + . . scaffold1763 TRF Tandem_Repeat 66090 66258 74 + . . scaffold1763 TRF Tandem_Repeat 68072 68097 52 + . . scaffold1763 TRF Tandem_Repeat 74596 74687 96 + . . scaffold1763 TRF Tandem_Repeat 78375 79161 951 + . . scaffold1763 TRF Tandem_Repeat 80113 80259 73 + . . scaffold1763 TRF Tandem_Repeat 80175 80304 93 + . . scaffold1763 TRF Tandem_Repeat 86254 87281 1682 + . . scaffold1763 GLEAN promoter 86924 87923 0.999893 + . ID=CGI_10019527; scaffold1763 GLEAN mRNA 87924 111548 0.999893 + . ID=CGI_10019527; scaffold1763 TRF Tandem_Repeat 95218 95261 79 + . . scaffold1763 TRF Tandem_Repeat 97369 97415 94 + . . scaffold1763 TRF Tandem_Repeat 100314 100341 56 + . . scaffold1763 WUBlastX LINE_RTE-X 114508 115221 147 + . . scaffold1763 GLEAN mRNA 129887 130699 0.733669 - . ID=CGI_10019528; scaffold1763 GLEAN promoter 130700 131699 0.733669 - . ID=CGI_10019528; scaffold1763 TRF Tandem_Repeat 131027 131059 66 + . . scaffold1763 TRF Tandem_Repeat 133314 133478 269 + . . scaffold1763 GLEAN mRNA 135475 136560 0.998485 - . ID=CGI_10019529; scaffold1763 GLEAN promoter 136561 137560 0.998485 - . ID=CGI_10019529; scaffold1763 TRF Tandem_Repeat 141960 141991 64 + . . scaffold1763 TRF Tandem_Repeat 155904 155952 98 + . . scaffold1763 TRF Tandem_Repeat 161080 161114 70 + . . scaffold1763 GLEAN promoter 162532 163531 0.996036 + . ID=CGI_10019530; scaffold1763 GLEAN mRNA 163532 213844 0.996036 + . ID=CGI_10019530; scaffold1763 TRF Tandem_Repeat 165661 165706 74 + . . scaffold1763 TRF Tandem_Repeat 173756 173824 138 + . . scaffold1763 GLEAN promoter 213419 214418 0.833121 + . ID=CGI_10019531; scaffold1763 GLEAN mRNA 214419 220650 0.833121 + . ID=CGI_10019531; scaffold1763 GLEAN promoter 220962 221961 0.829501 + . ID=CGI_10019532; scaffold1763 GLEAN mRNA 221962 231151 0.829501 + . ID=CGI_10019532; scaffold1763 GLEAN promoter 230556 231555 1 + . ID=CGI_10019533; scaffold1763 GLEAN mRNA 231556 231720 1 + . ID=CGI_10019533; scaffold1763 TRF Tandem_Repeat 232577 233369 1185 + . . scaffold1763 TRF Tandem_Repeat 245437 245594 108 + . . scaffold1763 WUBlastX LTR_DIRS 250742 250849 79 + . . scaffold1763 GLEAN mRNA 251525 257019 1 - . ID=CGI_10019534; scaffold1763 GLEAN promoter 257020 258019 1 - . ID=CGI_10019534; scaffold1763 GLEAN mRNA 259488 264482 0.553828 - . ID=CGI_10019535; scaffold1763 GLEAN promoter 264483 265482 0.553828 - . ID=CGI_10019535; scaffold1763 GLEAN mRNA 264969 269834 0.995556 - . ID=CGI_10019536; scaffold1763 GLEAN promoter 269835 270834 0.995556 - . ID=CGI_10019536; scaffold1763 TRF Tandem_Repeat 287438 288293 1222 + . . scaffold1763 GLEAN promoter 289852 290851 0.774101 + . ID=CGI_10019537; scaffold1763 GLEAN mRNA 290852 318672 0.774101 + . ID=CGI_10019537; scaffold1763 GLEAN promoter 318428 319427 1 + . ID=CGI_10019538; scaffold1763 GLEAN mRNA 319428 322763 1 + . ID=CGI_10019538; scaffold1763 GLEAN promoter 324203 325202 0.776794 + . ID=CGI_10019539; scaffold1763 GLEAN mRNA 325203 325619 0.776794 + . ID=CGI_10019539; scaffold1763 TRF Tandem_Repeat 328576 328810 208 + . . scaffold1763 TRF Tandem_Repeat 328583 329035 213 + . . scaffold1763 TRF Tandem_Repeat 328584 328862 245 + . . scaffold1763 TRF Tandem_Repeat 328698 329036 262 + . . scaffold1763 TRF Tandem_Repeat 328698 329036 314 + . . scaffold1763 GLEAN mRNA 329208 331955 1 - . ID=CGI_10019540; scaffold1763 GLEAN promoter 331956 332955 1 - . ID=CGI_10019540; scaffold1763 GLEAN promoter 332282 333281 0.682238 + . ID=CGI_10019541; scaffold1763 GLEAN mRNA 333282 358985 0.682238 + . ID=CGI_10019541; scaffold1763 TRF Tandem_Repeat 361376 361416 82 + . . scaffold1763 TRF Tandem_Repeat 363927 363960 68 + . . scaffold1763 GLEAN mRNA 366909 372434 1 - . ID=CGI_10019542; scaffold1763 GLEAN promoter 372435 373434 1 - . ID=CGI_10019542; scaffold1763 TRF Tandem_Repeat 374045 374092 96 + . . scaffold1763 GLEAN mRNA 375839 396703 0.558324 - . ID=CGI_10019543; scaffold1763 TRF Tandem_Repeat 379099 379131 66 + . . scaffold1763 TRF Tandem_Repeat 381084 381412 496 + . . scaffold1763 TRF Tandem_Repeat 386008 386174 113 + . . scaffold1763 TRF Tandem_Repeat 386156 386649 641 + . . scaffold1763 TRF Tandem_Repeat 386697 386818 77 + . . scaffold1763 TRF Tandem_Repeat 390715 390759 90 + . . scaffold1763 GLEAN promoter 396704 397703 0.558324 - . ID=CGI_10019543; scaffold1763 GLEAN promoter 398342 399341 0.432682 + . ID=CGI_10019544; scaffold1763 TRF Tandem_Repeat 398838 398901 85 + . . scaffold1763 TRF Tandem_Repeat 398958 399007 93 + . . scaffold1763 GLEAN mRNA 399342 426155 0.432682 + . ID=CGI_10019544; scaffold1763 TRF Tandem_Repeat 421812 421837 52 + . . scaffold1763 GLEAN mRNA 422546 423673 0.479482 - . ID=CGI_10019545; scaffold1763 GLEAN promoter 423674 424673 0.479482 - . ID=CGI_10019545; scaffold1763 GLEAN mRNA 430939 443571 0.889891 - . ID=CGI_10019546; scaffold1763 GLEAN promoter 443572 444571 0.889891 - . ID=CGI_10019546; scaffold1763 GLEAN mRNA 446680 450826 0.999076 - . ID=CGI_10019547; scaffold1763 GLEAN promoter 450827 451826 0.999076 - . ID=CGI_10019547; scaffold1763 GLEAN promoter 450922 451921 0.650443 + . ID=CGI_10019548; scaffold1763 GLEAN mRNA 451922 462988 0.650443 + . ID=CGI_10019548; scaffold1763 TRF Tandem_Repeat 455885 455920 72 + . . scaffold1763 TRF Tandem_Repeat 457574 457630 105 + . . scaffold1763 TRF Tandem_Repeat 461089 461133 90 + . . scaffold1763 GLEAN mRNA 464668 466093 1 - . ID=CGI_10019549; scaffold1763 GLEAN promoter 466094 467093 1 - . ID=CGI_10019549; scaffold1763 GLEAN promoter 466979 467978 0.992599 + . ID=CGI_10019550; scaffold1763 GLEAN mRNA 467979 471302 0.992599 + . ID=CGI_10019550; scaffold1763 TRF Tandem_Repeat 474715 474753 78 + . . scaffold1763 TRF Tandem_Repeat 478550 478597 89 + . . scaffold1763 GLEAN promoter 483461 484460 0.997911 + . ID=CGI_10019551; scaffold1763 GLEAN mRNA 484461 488570 0.997911 + . ID=CGI_10019551; scaffold1763 TRF Tandem_Repeat 484776 484984 183 + . . scaffold1763 TRF Tandem_Repeat 485658 486125 586 + . . scaffold1763 GLEAN mRNA 490453 513631 0.978978 - . ID=CGI_10019552; scaffold1763 GLEAN promoter 492244 493243 1 + . ID=CGI_10019553; scaffold1763 GLEAN mRNA 493244 498267 1 + . ID=CGI_10019553; scaffold1763 GLEAN promoter 513632 514631 0.978978 - . ID=CGI_10019552; scaffold1763 GLEAN mRNA 515299 516820 0.71825 - . ID=CGI_10019554; scaffold1763 GLEAN promoter 516821 517820 0.71825 - . ID=CGI_10019554; scaffold1763 TRF Tandem_Repeat 523642 523687 92 + . . scaffold1763 GLEAN mRNA 524848 525636 0.734554 - . ID=CGI_10019555; scaffold1763 GLEAN promoter 525637 526636 0.734554 - . ID=CGI_10019555; scaffold1763 TRF Tandem_Repeat 529803 529839 74 + . . scaffold1763 WUBlastX LINE_RTE-X 537832 538302 93 + . . scaffold1763 WUBlastX LINE_RTE-X 537865 538140 116 + . . scaffold1763 WUBlastX LINE_RTE-X 537865 538263 94 + . . scaffold1763 WUBlastX LINE_RTE-X 538293 538439 68 + . . scaffold1763 WUBlastX LINE_RTE-X 538293 538478 52 + . . scaffold1763 WUBlastX LINE_RTE-X 538323 538514 28 + . . scaffold1763 WUBlastX LINE_RTE-X 539079 539390 31 + . . scaffold1763 WUBlastX LINE_RTE-X 539121 539339 55 + . . scaffold1763 TRF Tandem_Repeat 540040 540079 80 + . . scaffold1763 GLEAN promoter 541696 542695 0.951223 + . ID=CGI_10019557; scaffold1763 GLEAN mRNA 542696 556118 0.951223 + . ID=CGI_10019557; scaffold1763 GLEAN mRNA 554710 556215 0.535627 - . ID=CGI_10019558; scaffold1763 GLEAN promoter 556216 557215 0.535627 - . ID=CGI_10019558; scaffold1763 GLEAN promoter 558186 559185 0.958069 + . ID=CGI_10019559; scaffold1763 GLEAN mRNA 559186 578845 0.958069 + . ID=CGI_10019559; scaffold1763 TRF Tandem_Repeat 569572 569607 63 + . . scaffold1763 TRF Tandem_Repeat 569611 569730 195 + . . scaffold1763 GLEAN mRNA 571468 572082 0.98831 - . ID=CGI_10019560; scaffold1763 GLEAN promoter 572083 573082 0.98831 - . ID=CGI_10019560; scaffold1763 TRF Tandem_Repeat 579508 579546 53 + . . scaffold1763 TRF Tandem_Repeat 581915 582376 187 + . . scaffold1763 TRF Tandem_Repeat 581956 582296 191 + . . scaffold1763 TRF Tandem_Repeat 585953 586113 216 + . . scaffold1763 GLEAN mRNA 594836 599605 0.993907 - . ID=CGI_10019561; scaffold1763 GLEAN promoter 599606 600605 0.993907 - . ID=CGI_10019561; scaffold1764 WUBlastX DNA_Kolobok 521 676 60 - . . scaffold1764 WUBlastX DNA_Kolobok 731 952 80 - . . scaffold1764 WUBlastX DNA_Kolobok 764 940 92 - . . scaffold1764 WUBlastX DNA_Kolobok 1121 1306 40 - . . scaffold1764 WUBlastX DNA_Kolobok 1213 1680 68 - . . scaffold1764 WUBlastX DNA_Kolobok 1435 1632 119 - . . scaffold1764 WUBlastX DNA_Kolobok 1820 1888 51 - . . scaffold1764 WUBlastX DNA_Kolobok 1888 2409 71 - . . scaffold1764 WUBlastX DNA_Kolobok 1888 2688 59 - . . scaffold1764 WUBlastX DNA_PiggyBac 4192 4332 51 + . . scaffold1764 TRF Tandem_Repeat 6301 6377 50 + . . scaffold1764 WUBlastX LINE_RTE-X 19193 19369 54 + . . scaffold1765 GLEAN mRNA 443 9393 0.968061 - . ID=CGI_10001220; scaffold1765 GLEAN promoter 9394 10393 0.968061 - . ID=CGI_10001220; scaffold1766 WUBlastX LINE_L1-Tx1 214 1062 78 - . . scaffold1766 WUBlastX LINE_L1-Tx1 358 1014 121 - . . scaffold1766 TRF Tandem_Repeat 4347 4406 120 + . . scaffold1766 GLEAN mRNA 8111 13760 0.999906 - . ID=CGI_10006270; scaffold1766 TRF Tandem_Repeat 9533 9582 82 + . . scaffold1766 WUBlastX LTR_DIRS 11633 11797 78 + . . scaffold1766 WUBlastX LTR_DIRS 11788 11886 30 + . . scaffold1766 GLEAN promoter 13761 14760 0.999906 - . ID=CGI_10006270; scaffold1766 WUBlastX LTR_DIRS 16326 16535 55 + . . scaffold1766 TRF Tandem_Repeat 16607 17137 1008 + . . scaffold1766 WUBlastX LTR_DIRS 17634 17918 82 + . . scaffold1766 WUBlastX LTR_DIRS? 17706 17918 86 + . . scaffold1766 TRF Tandem_Repeat 24106 24393 406 + . . scaffold1766 TRF Tandem_Repeat 24106 24393 390 + . . scaffold1766 WUBlastX DNA_TcMar-m44 24488 24685 83 - . . scaffold1766 GLEAN mRNA 25143 25367 0.99998 - . ID=CGI_10006271; scaffold1766 GLEAN promoter 25368 26367 0.99998 - . ID=CGI_10006271; scaffold1766 TRF Tandem_Repeat 30476 30527 86 + . . scaffold1766 GLEAN mRNA 33349 41569 0.889842 - . ID=CGI_10006272; scaffold1766 GLEAN promoter 41570 42569 0.889842 - . ID=CGI_10006272; scaffold1766 TRF Tandem_Repeat 42022 42064 86 + . . scaffold1766 TRF Tandem_Repeat 44364 44398 70 + . . scaffold1766 GLEAN mRNA 70362 81170 0.999735 - . ID=CGI_10006273; scaffold1766 TRF Tandem_Repeat 73818 73937 222 + . . scaffold1766 TRF Tandem_Repeat 73991 74482 824 + . . scaffold1766 TRF Tandem_Repeat 77780 77828 91 + . . scaffold1766 GLEAN promoter 80525 81524 0.810571 + . ID=CGI_10006274; scaffold1766 GLEAN promoter 81171 82170 0.999735 - . ID=CGI_10006273; scaffold1766 GLEAN mRNA 81525 90917 0.810571 + . ID=CGI_10006274; scaffold1766 TRF Tandem_Repeat 89094 89153 111 + . . scaffold1766 GLEAN mRNA 93150 94949 0.617994 - . ID=CGI_10006275; scaffold1766 GLEAN promoter 94950 95949 0.617994 - . ID=CGI_10006275; scaffold1766 TRF Tandem_Repeat 96025 96068 61 + . . scaffold1766 TRF Tandem_Repeat 96339 96508 259 + . . scaffold1766 WUBlastX LINE_L1-Tx1 100932 101456 58 - . . scaffold1766 WUBlastX LINE_L1 101635 101967 101 - . . scaffold1766 WUBlastX LINE_L1-Tx1 102758 103000 55 - . . scaffold1766 WUBlastX LINE_L1 109769 110950 51 - . . scaffold1766 WUBlastX LINE_L1-Tx1 109982 110962 106 - . . scaffold1766 WUBlastX LINE_L1 110351 110941 108 - . . scaffold1766 GLEAN promoter 110447 111446 0.669853 + . ID=CGI_10006276; scaffold1766 GLEAN mRNA 111447 117242 0.669853 + . ID=CGI_10006276; scaffold1766 TRF Tandem_Repeat 111761 111821 122 + . . scaffold1766 TRF Tandem_Repeat 115809 115905 107 + . . scaffold1766 GLEAN mRNA 118788 120839 0.617928 - . ID=CGI_10006277; scaffold1766 GLEAN promoter 120840 121839 0.617928 - . ID=CGI_10006277; scaffold1766 GLEAN mRNA 123917 148776 0.996199 - . ID=CGI_10006278; scaffold1766 TRF Tandem_Repeat 126024 126111 54 + . . scaffold1766 TRF Tandem_Repeat 126871 127626 856 + . . scaffold1766 TRF Tandem_Repeat 126962 127701 659 + . . scaffold1766 TRF Tandem_Repeat 129062 130176 552 + . . scaffold1766 TRF Tandem_Repeat 130282 130338 96 + . . scaffold1766 TRF Tandem_Repeat 134296 134337 84 + . . scaffold1766 TRF Tandem_Repeat 138415 139010 1111 + . . scaffold1766 TRF Tandem_Repeat 139956 140061 176 + . . scaffold1766 TRF Tandem_Repeat 140518 140569 104 + . . scaffold1766 TRF Tandem_Repeat 142394 142787 563 + . . scaffold1766 TRF Tandem_Repeat 143280 143364 86 + . . scaffold1766 WUBlastX DNA_hAT-hAT5 146082 146255 26 - . . scaffold1766 GLEAN promoter 148777 148822 0.996199 - . ID=CGI_10006278; scaffold1767 TRF Tandem_Repeat 15461 15496 72 + . . scaffold1767 TRF Tandem_Repeat 17418 17484 134 + . . scaffold1767 TRF Tandem_Repeat 18376 18415 71 + . . scaffold1767 GLEAN promoter 21141 22140 0.650508 + . ID=CGI_10016903; scaffold1767 GLEAN mRNA 22141 25463 0.650508 + . ID=CGI_10016903; scaffold1767 TRF Tandem_Repeat 23332 23373 84 + . . scaffold1767 TRF Tandem_Repeat 24240 24308 138 + . . scaffold1767 TRF Tandem_Repeat 36292 36325 68 + . . scaffold1767 GLEAN mRNA 36599 52203 0.998333 - . ID=CGI_10016904; scaffold1767 GLEAN promoter 52204 53203 0.998333 - . ID=CGI_10016904; scaffold1767 TRF Tandem_Repeat 74759 75062 545 + . . scaffold1767 TRF Tandem_Repeat 85825 86944 1890 + . . scaffold1767 TRF Tandem_Repeat 87114 87176 69 + . . scaffold1767 GLEAN mRNA 88007 89692 0.999999 - . ID=CGI_10016905; scaffold1767 GLEAN promoter 89693 90692 0.999999 - . ID=CGI_10016905; scaffold1767 GLEAN promoter 89889 90888 1 + . ID=CGI_10016906; scaffold1767 GLEAN mRNA 90889 92562 1 + . ID=CGI_10016906; scaffold1767 GLEAN promoter 92032 93031 0.99967 + . ID=CGI_10016907; scaffold1767 GLEAN mRNA 93032 98652 0.99967 + . ID=CGI_10016907; scaffold1767 WUBlastX LINE_RTE-BovB 93098 93199 23 + . . scaffold1767 WUBlastX LINE_L1-Tx1 93699 95615 458 + . . scaffold1767 GLEAN promoter 99572 100571 0.558354 + . ID=CGI_10016908; scaffold1767 GLEAN mRNA 100572 112055 0.558354 + . ID=CGI_10016908; scaffold1767 TRF Tandem_Repeat 105316 105352 74 + . . scaffold1767 TRF Tandem_Repeat 106701 106736 72 + . . scaffold1767 TRF Tandem_Repeat 127449 127507 73 + . . scaffold1767 TRF Tandem_Repeat 129955 129997 79 + . . scaffold1767 GLEAN mRNA 133191 156845 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 134501 134574 141 + . . scaffold1767 TRF Tandem_Repeat 136997 138080 1394 + . . scaffold1767 TRF Tandem_Repeat 139847 139912 80 + . . scaffold1767 TRF Tandem_Repeat 141745 141774 60 + . . scaffold1767 TRF Tandem_Repeat 145628 145687 84 + . . scaffold1767 TRF Tandem_Repeat 145628 145687 75 + . . scaffold1767 TRF Tandem_Repeat 152495 152534 53 + . . scaffold1767 TRF Tandem_Repeat 155275 155317 77 + . . scaffold1767 GLEAN promoter 156846 157845 0.999949 - . ID=CGI_10016909; scaffold1767 TRF Tandem_Repeat 157504 157569 132 + . . scaffold1767 TRF Tandem_Repeat 158034 158076 79 + . . scaffold1767 TRF Tandem_Repeat 158742 158783 84 + . . scaffold1767 TRF Tandem_Repeat 160986 161025 71 + . . scaffold1767 TRF Tandem_Repeat 161065 161118 99 + . . scaffold1767 TRF Tandem_Repeat 161343 161375 66 + . . scaffold1767 GLEAN mRNA 173957 180250 0.633694 - . ID=CGI_10016910; scaffold1767 WUBlastX LTR_Copia 174026 174166 32 - . . scaffold1767 GLEAN promoter 180251 181250 0.633694 - . ID=CGI_10016910; scaffold1767 TRF Tandem_Repeat 186358 186428 60 + . . scaffold1767 GLEAN promoter 198613 199612 1 + . ID=CGI_10016911; scaffold1767 TRF Tandem_Repeat 199015 199051 74 + . . scaffold1767 GLEAN mRNA 199613 199837 1 + . ID=CGI_10016911; scaffold1767 GLEAN mRNA 200573 200958 1 - . ID=CGI_10016912; scaffold1767 GLEAN promoter 200959 201958 1 - . ID=CGI_10016912; scaffold1767 GLEAN mRNA 207669 208281 0.981693 - . ID=CGI_10016913; scaffold1767 GLEAN promoter 208282 209281 0.981693 - . ID=CGI_10016913; scaffold1767 GLEAN mRNA 211486 214296 1 - . ID=CGI_10016914; scaffold1767 GLEAN promoter 214297 215296 1 - . ID=CGI_10016914; scaffold1767 WUBlastX LINE_RTE-BovB 220969 221055 29 + . . scaffold1767 WUBlastX LINE_RTE-BovB 221424 221861 50 + . . scaffold1767 WUBlastX LINE_RTE-BovB 221517 222695 314 + . . scaffold1767 GLEAN promoter 222798 223797 0.99088 + . ID=CGI_10016915; scaffold1767 WUBlastX LTR_Ngaro 222863 223006 51 - . . scaffold1767 GLEAN mRNA 223798 224805 0.99088 + . ID=CGI_10016915; scaffold1767 GLEAN promoter 225054 226053 0.999887 + . ID=CGI_10016916; scaffold1767 GLEAN mRNA 226054 226671 0.999887 + . ID=CGI_10016916; scaffold1767 GLEAN mRNA 230822 248481 0.835152 - . ID=CGI_10016917; scaffold1767 GLEAN promoter 248482 249481 0.835152 - . ID=CGI_10016917; scaffold1767 GLEAN mRNA 266695 268437 0.998383 - . ID=CGI_10016918; scaffold1767 GLEAN promoter 268438 269437 0.998383 - . ID=CGI_10016918; scaffold1767 WUBlastX LINE_L1-Tx1 268953 269561 164 - . . scaffold1767 TRF Tandem_Repeat 272151 272192 75 + . . scaffold1767 GLEAN mRNA 272494 275343 0.889923 - . ID=CGI_10016919; scaffold1767 TRF Tandem_Repeat 272772 272804 57 + . . scaffold1767 GLEAN promoter 274985 275984 0.867024 + . ID=CGI_10016920; scaffold1767 GLEAN promoter 275344 276343 0.889923 - . ID=CGI_10016919; scaffold1767 TRF Tandem_Repeat 275782 275814 66 + . . scaffold1767 GLEAN mRNA 275985 293535 0.867024 + . ID=CGI_10016920; scaffold1767 TRF Tandem_Repeat 289387 289435 89 + . . scaffold1767 TRF Tandem_Repeat 297714 297775 124 + . . scaffold1767 GLEAN mRNA 307752 318787 0.91566 - . ID=CGI_10016921; scaffold1767 TRF Tandem_Repeat 308992 309049 109 + . . scaffold1767 TRF Tandem_Repeat 313543 313604 81 + . . scaffold1767 TRF Tandem_Repeat 315732 315768 74 + . . scaffold1767 GLEAN promoter 318788 319787 0.91566 - . ID=CGI_10016921; scaffold1767 GLEAN mRNA 318995 329187 0.685963 - . ID=CGI_10016922; scaffold1767 TRF Tandem_Repeat 328684 328749 105 + . . scaffold1767 GLEAN promoter 329188 330187 0.685963 - . ID=CGI_10016922; scaffold1767 GLEAN mRNA 353397 356768 1 - . ID=CGI_10016923; scaffold1767 GLEAN promoter 356769 357768 1 - . ID=CGI_10016923; scaffold1767 GLEAN mRNA 360843 364238 0.999949 - . ID=CGI_10016924; scaffold1767 GLEAN promoter 364239 365238 0.999949 - . ID=CGI_10016924; scaffold1767 GLEAN mRNA 365061 368738 1 - . ID=CGI_10016925; scaffold1767 GLEAN promoter 368739 369738 1 - . ID=CGI_10016925; scaffold1767 GLEAN mRNA 373639 384950 0.998695 - . ID=CGI_10016926; scaffold1767 WUBlastX DNA_Maverick 373975 374355 30 - . . scaffold1767 WUBlastX DNA_hAT 375745 377310 427 - . . scaffold1767 GLEAN promoter 382672 383671 0.93216 + . ID=CGI_10016927; scaffold1767 GLEAN mRNA 383672 387166 0.93216 + . ID=CGI_10016927; scaffold1767 GLEAN promoter 384951 385950 0.998695 - . ID=CGI_10016926; scaffold1767 TRF Tandem_Repeat 389923 390176 436 + . . scaffold1767 WUBlastX LINE_R2-Hero 390291 390446 45 - . . scaffold1767 WUBlastX LINE_R2-Hero 390487 390858 47 - . . scaffold1767 WUBlastX LINE_R2-Hero 390887 390964 31 - . . scaffold1767 GLEAN promoter 391161 392160 0.999027 + . ID=CGI_10016928; scaffold1767 GLEAN mRNA 392161 412180 0.999027 + . ID=CGI_10016928; scaffold1767 GLEAN mRNA 397635 404251 1 - . ID=CGI_10016929; scaffold1767 GLEAN promoter 404252 405251 1 - . ID=CGI_10016929; scaffold1767 TRF Tandem_Repeat 406168 406236 111 + . . scaffold1767 TRF Tandem_Repeat 410018 410322 110 + . . scaffold1767 TRF Tandem_Repeat 410152 410322 145 + . . scaffold1767 TRF Tandem_Repeat 410243 410304 51 + . . scaffold1767 GLEAN mRNA 413622 419473 0.969638 - . ID=CGI_10016930; scaffold1767 GLEAN promoter 419474 420473 0.969638 - . ID=CGI_10016930; scaffold1767 TRF Tandem_Repeat 419537 419592 112 + . . scaffold1767 TRF Tandem_Repeat 423975 424066 154 + . . scaffold1767 WUBlastX LINE_RTE-X 434488 435300 159 - . . scaffold1767 GLEAN promoter 439539 440538 0.149913 + . ID=CGI_10016931; scaffold1767 GLEAN mRNA 440539 475831 0.149913 + . ID=CGI_10016931; scaffold1767 TRF Tandem_Repeat 445121 446081 1396 + . . scaffold1767 TRF Tandem_Repeat 456307 456351 90 + . . scaffold1767 TRF Tandem_Repeat 468879 469832 1234 + . . scaffold1768 WUBlastX DNA_Harbinger 176 292 113 + . . scaffold1768 GLEAN promoter 10128 11127 0.999661 + . ID=CGI_10001460; scaffold1768 GLEAN mRNA 11128 12882 0.999661 + . ID=CGI_10001460; scaffold1768 GLEAN promoter 13399 14398 0.999984 + . ID=CGI_10001461; scaffold1768 GLEAN mRNA 14399 16087 0.999984 + . ID=CGI_10001461; scaffold1769 TRF Tandem_Repeat 12113 12159 58 + . . scaffold1769 GLEAN promoter 17583 18582 0.999593 + . ID=CGI_10009232; scaffold1769 GLEAN mRNA 18583 21931 0.999593 + . ID=CGI_10009232; scaffold1769 TRF Tandem_Repeat 24080 24421 456 + . . scaffold1769 GLEAN promoter 29296 30295 0.412732 + . ID=CGI_10009233; scaffold1769 GLEAN mRNA 30296 52368 0.412732 + . ID=CGI_10009233; scaffold1769 TRF Tandem_Repeat 32877 32943 134 + . . scaffold1769 TRF Tandem_Repeat 33253 33304 95 + . . scaffold1769 TRF Tandem_Repeat 35797 35836 80 + . . scaffold1769 TRF Tandem_Repeat 40578 40620 86 + . . scaffold1769 TRF Tandem_Repeat 45382 45409 56 + . . scaffold1769 TRF Tandem_Repeat 51847 51924 77 + . . scaffold1769 TRF Tandem_Repeat 51848 51906 57 + . . scaffold1769 TRF Tandem_Repeat 53129 53190 124 + . . scaffold1769 GLEAN mRNA 63852 69111 0.999235 - . ID=CGI_10009234; scaffold1769 TRF Tandem_Repeat 64380 64430 84 + . . scaffold1769 TRF Tandem_Repeat 64784 65358 745 + . . scaffold1769 GLEAN promoter 69112 70111 0.999235 - . ID=CGI_10009234; scaffold1769 GLEAN mRNA 71036 76634 0.999964 - . ID=CGI_10009235; scaffold1769 TRF Tandem_Repeat 73512 73903 475 + . . scaffold1769 GLEAN promoter 76635 77634 0.999964 - . ID=CGI_10009235; scaffold1769 GLEAN mRNA 78656 81902 1 - . ID=CGI_10009236; scaffold1769 GLEAN promoter 81903 82902 1 - . ID=CGI_10009236; scaffold1769 TRF Tandem_Repeat 84536 84593 107 + . . scaffold1769 GLEAN promoter 90038 91037 1 + . ID=CGI_10009237; scaffold1769 WUBlastX LTR_Gypsy 90762 91286 22 + . . scaffold1769 GLEAN mRNA 91038 92183 1 + . ID=CGI_10009237; scaffold1769 TRF Tandem_Repeat 94477 94529 106 + . . scaffold1769 TRF Tandem_Repeat 96510 96535 52 + . . scaffold1769 WUBlastX LINE_RTE-X 97180 97326 20 - . . scaffold1769 WUBlastX LINE_RTE-X 97234 97326 40 - . . scaffold1769 WUBlastX LINE_RTE-X 97328 97441 32 - . . scaffold1769 WUBlastX LINE_RTE-X 97328 97396 33 - . . scaffold1769 GLEAN promoter 101392 102391 0.503348 + . ID=CGI_10009238; scaffold1769 WUBlastX LTR_Gypsy 102128 102652 37 + . . scaffold1769 GLEAN mRNA 102392 103552 0.503348 + . ID=CGI_10009238; scaffold1769 TRF Tandem_Repeat 106362 106418 114 + . . scaffold1769 GLEAN promoter 106929 107928 0.999999 + . ID=CGI_10009239; scaffold1769 GLEAN mRNA 107929 125472 0.999999 + . ID=CGI_10009239; scaffold1769 TRF Tandem_Repeat 110117 110206 58 + . . scaffold1769 TRF Tandem_Repeat 112092 112413 422 + . . scaffold1769 TRF Tandem_Repeat 112094 112413 119 + . . scaffold1769 TRF Tandem_Repeat 113104 113143 57 + . . scaffold1769 TRF Tandem_Repeat 117923 118711 1149 + . . scaffold1769 TRF Tandem_Repeat 123016 123107 53 + . . scaffold1769 WUBlastX LTR_Ngaro 126730 127002 136 + . . scaffold1769 WUBlastX LTR_Ngaro 126966 127694 195 + . . scaffold1769 WUBlastX LTR_Ngaro 127703 127912 110 + . . scaffold1769 WUBlastX LINE_L2 128086 128520 82 + . . scaffold1769 GLEAN mRNA 128624 136583 0.400534 - . ID=CGI_10009240; scaffold1769 GLEAN promoter 136584 137583 0.400534 - . ID=CGI_10009240; scaffold1769 TRF Tandem_Repeat 137158 137203 92 + . . scaffold1769 TRF Tandem_Repeat 137397 137447 102 + . . scaffold1769 GLEAN mRNA 137555 138587 0.999507 - . ID=CGI_10009241; scaffold1769 WUBlastX DNA_Kolobok-IS4 138293 138439 36 - . . scaffold1769 WUBlastX DNA_IS4EU 138540 138935 69 - . . scaffold1769 GLEAN promoter 138588 139587 0.999507 - . ID=CGI_10009241; scaffold1769 GLEAN mRNA 144291 189811 0.937759 - . ID=CGI_10009242; scaffold1769 WUBlastX LINE_L2 145125 145295 26 - . . scaffold1769 TRF Tandem_Repeat 151150 152061 930 + . . scaffold1769 TRF Tandem_Repeat 155092 155124 66 + . . scaffold1769 TRF Tandem_Repeat 163504 163550 94 + . . scaffold1769 TRF Tandem_Repeat 170172 170200 58 + . . scaffold1769 TRF Tandem_Repeat 183856 183929 130 + . . scaffold1769 TRF Tandem_Repeat 184015 184054 80 + . . scaffold1769 GLEAN promoter 189812 190811 0.937759 - . ID=CGI_10009242; scaffold1769 WUBlastX LTR_Gypsy 189843 189995 20 - . . scaffold1769 WUBlastX LTR_Gypsy 189881 191131 661 - . . scaffold1769 WUBlastX LTR_Gypsy 190481 191326 85 - . . scaffold1769 WUBlastX LTR_Gypsy 191570 191632 26 - . . scaffold1769 WUBlastX LTR_Gypsy 191984 192325 42 - . . scaffold1769 WUBlastX LTR_Gypsy 192053 192343 97 - . . scaffold1769 WUBlastX LTR_Gypsy 192110 192328 138 - . . scaffold1769 WUBlastX LTR_Gypsy 192152 192328 146 - . . scaffold1769 WUBlastX LTR_Gypsy 192185 192328 151 - . . scaffold1769 WUBlastX LTR_Gypsy 192185 192355 128 - . . scaffold1769 GLEAN promoter 193019 194018 0.990769 + . ID=CGI_10009243; scaffold1769 WUBlastX DNA_Crypton 193746 194324 176 + . . scaffold1769 GLEAN mRNA 194019 207786 0.990769 + . ID=CGI_10009243; scaffold1769 TRF Tandem_Repeat 195061 195119 118 + . . scaffold1769 WUBlastX DNA_Crypton 196580 196780 97 + . . scaffold1769 TRF Tandem_Repeat 202461 202697 203 + . . scaffold1769 TRF Tandem_Repeat 204248 204392 263 + . . scaffold1769 TRF Tandem_Repeat 207188 207312 241 + . . scaffold1769 GLEAN mRNA 210491 214807 0.995077 - . ID=CGI_10009244; scaffold1769 GLEAN promoter 214808 215807 0.995077 - . ID=CGI_10009244; scaffold1769 TRF Tandem_Repeat 215079 215103 50 + . . scaffold1769 GLEAN mRNA 218504 219835 0.824419 - . ID=CGI_10009245; scaffold1769 GLEAN promoter 219836 220835 0.824419 - . ID=CGI_10009245; scaffold1769 TRF Tandem_Repeat 220993 221054 124 + . . scaffold1769 TRF Tandem_Repeat 221365 221402 76 + . . scaffold1769 GLEAN mRNA 225026 226102 1 - . ID=CGI_10009246; scaffold1769 GLEAN promoter 226103 227102 1 - . ID=CGI_10009246; scaffold177 WUBlastX DNA_TcMar-Marin 1818 2024 21 + . . scaffold177 WUBlastX DNA_TcMar-Tc1 1953 2297 28 + . . scaffold177 WUBlastX DNA_TcMar-Tc1 2266 2907 258 + . . scaffold177 WUBlastX DNA_TcMar-Tc1 2266 2775 301 + . . scaffold177 WUBlastX DNA_TcMar-Tc1 2789 2929 56 + . . scaffold177 WUBlastX DNA_Maverick 4289 4474 83 + . . scaffold177 WUBlastX DNA_Maverick 4377 4766 109 + . . scaffold177 WUBlastX DNA_Maverick 4452 4847 150 + . . scaffold177 WUBlastX DNA_Maverick 4461 4754 156 + . . scaffold177 WUBlastX DNA_Maverick 4860 5090 163 + . . scaffold177 WUBlastX LINE_L1-Tx1 5104 5349 41 + . . scaffold177 WUBlastX LINE_L1-Tx1 5274 5525 214 + . . scaffold177 WUBlastX LINE_L1 5513 5791 200 + . . scaffold177 WUBlastX LINE_L1 5636 5821 62 + . . scaffold177 WUBlastX LINE_L1-Tx1 5714 6448 43 + . . scaffold177 WUBlastX LINE_L1-Tx1 5948 6409 82 + . . scaffold177 GLEAN promoter 7026 8025 1 + . ID=CGI_10016061; scaffold177 GLEAN mRNA 8026 8331 1 + . ID=CGI_10016061; scaffold177 TRF Tandem_Repeat 35627 35670 88 + . . scaffold177 WUBlastX LTR_Ngaro 42564 42941 163 - . . scaffold177 WUBlastX LTR_Ngaro 42564 43088 129 - . . scaffold177 WUBlastX LTR_Ngaro 43019 43483 114 - . . scaffold177 WUBlastX LTR_Ngaro 43501 43809 127 - . . scaffold177 WUBlastX LTR_Ngaro 43819 44283 114 - . . scaffold177 WUBlastX LTR_Ngaro 44295 45848 995 - . . scaffold177 TRF Tandem_Repeat 46545 46760 213 + . . scaffold177 TRF Tandem_Repeat 47344 47514 135 + . . scaffold177 TRF Tandem_Repeat 57454 57662 373 + . . scaffold177 WUBlastX LINE_Penelope 76820 77047 25 - . . scaffold177 WUBlastX LINE_CR1-L2 77930 78193 85 + . . scaffold177 WUBlastX LINE_L2 78133 79707 280 + . . scaffold177 WUBlastX LINE_CR1-L2 79722 80156 53 + . . scaffold177 WUBlastX LINE_L2 79779 80147 100 + . . scaffold177 TRF Tandem_Repeat 86328 86426 162 + . . scaffold177 TRF Tandem_Repeat 86838 86886 98 + . . scaffold177 WUBlastX DNA_TcMar-Marin 87947 88222 158 - . . scaffold177 WUBlastX DNA_TcMar-Marin 88246 88533 183 - . . scaffold177 WUBlastX DNA_TcMar-Marin 88527 88904 160 - . . scaffold177 TRF Tandem_Repeat 89564 89607 88 + . . scaffold177 TRF Tandem_Repeat 91146 91268 176 + . . scaffold177 TRF Tandem_Repeat 92059 92103 90 + . . scaffold177 TRF Tandem_Repeat 92334 92367 59 + . . scaffold177 WUBlastX LINE_L1-Tx1 95456 95791 21 + . . scaffold177 TRF Tandem_Repeat 105166 105225 111 + . . scaffold177 TRF Tandem_Repeat 105528 105588 122 + . . scaffold177 TRF Tandem_Repeat 105967 106019 106 + . . scaffold177 WUBlastX LINE_Penelope 115320 115376 24 - . . scaffold177 WUBlastX LINE_Penelope 115813 116214 155 - . . scaffold177 WUBlastX LINE_Penelope 116117 116743 165 - . . scaffold177 WUBlastX LINE_Penelope 116216 116950 188 - . . scaffold177 WUBlastX LINE_Penelope 116237 116854 336 - . . scaffold177 WUBlastX LINE_Penelope 116860 117276 182 - . . scaffold177 WUBlastX LINE_Penelope 117294 117938 291 - . . scaffold177 WUBlastX LINE_Penelope 117807 117968 34 - . . scaffold177 WUBlastX LINE_Penelope 118877 119272 86 - . . scaffold177 WUBlastX LINE_Penelope 118988 119242 92 - . . scaffold177 WUBlastX LINE_Penelope 119027 119323 71 - . . scaffold177 TRF Tandem_Repeat 129601 129658 82 + . . scaffold177 WUBlastX LINE_RTE-BovB 135316 135456 32 - . . scaffold177 WUBlastX LINE_RTE-BovB 135634 135687 21 - . . scaffold177 TRF Tandem_Repeat 141987 142795 751 + . . scaffold177 TRF Tandem_Repeat 144210 144271 99 + . . scaffold177 TRF Tandem_Repeat 144210 144271 81 + . . scaffold177 TRF Tandem_Repeat 148150 148190 50 + . . scaffold177 TRF Tandem_Repeat 156947 156982 63 + . . scaffold177 TRF Tandem_Repeat 166564 167306 733 + . . scaffold177 TRF Tandem_Repeat 166564 167321 730 + . . scaffold177 TRF Tandem_Repeat 183506 183554 55 + . . scaffold177 WUBlastX RC_Helitron 189645 189872 25 + . . scaffold177 WUBlastX RC_Helitron 189693 189899 42 + . . scaffold177 WUBlastX RC_Helitron 189901 190287 21 + . . scaffold177 WUBlastX RC_Helitron 189910 190224 24 + . . scaffold177 TRF Tandem_Repeat 190617 190992 300 + . . scaffold177 WUBlastX RC_Helitron 191012 192298 464 + . . scaffold177 WUBlastX RC_Helitron 192265 192444 43 + . . scaffold177 WUBlastX RC_Helitron 192435 192731 152 + . . scaffold177 WUBlastX RC_Helitron 192453 192695 207 + . . scaffold177 WUBlastX RC_Helitron 192689 192979 146 + . . scaffold177 WUBlastX RC_Helitron 192877 193548 440 + . . scaffold177 WUBlastX RC_Helitron 193506 194204 255 + . . scaffold177 WUBlastX RC_Helitron 193824 196466 1179 + . . scaffold177 WUBlastX LINE_L2 196059 196547 32 + . . scaffold177 TRF Tandem_Repeat 199017 199124 74 + . . scaffold177 TRF Tandem_Repeat 199827 199870 81 + . . scaffold177 TRF Tandem_Repeat 200047 200153 196 + . . scaffold177 TRF Tandem_Repeat 201174 201210 74 + . . scaffold177 TRF Tandem_Repeat 202308 202498 183 + . . scaffold177 TRF Tandem_Repeat 213354 213421 73 + . . scaffold177 WUBlastX LTR_Gypsy-Cigr 219671 219907 46 + . . scaffold177 WUBlastX LTR_Gypsy 219924 220067 32 + . . scaffold177 WUBlastX LTR_Gypsy 220108 220521 23 + . . scaffold177 WUBlastX LTR_Gypsy 220171 222321 502 + . . scaffold177 WUBlastX LTR_Gypsy-Cigr 220663 222321 838 + . . scaffold177 WUBlastX LTR_Gypsy 222326 223183 445 + . . scaffold177 WUBlastX LTR_Gypsy 223177 223752 437 + . . scaffold177 WUBlastX LTR_Gypsy 223192 223914 233 + . . scaffold177 WUBlastX LTR_Gypsy 223722 224372 63 + . . scaffold177 WUBlastX LTR_Gypsy-Cigr 223734 224273 152 + . . scaffold177 WUBlastX LTR_Copia 224361 224408 21 + . . scaffold177 WUBlastX LTR_Gypsy 224636 224734 23 + . . scaffold177 GLEAN promoter 226296 227295 0.573337 + . ID=CGI_10016063; scaffold177 GLEAN mRNA 227296 227616 0.573337 + . ID=CGI_10016063; scaffold177 GLEAN mRNA 240974 299351 0.498178 - . ID=CGI_10016064; scaffold177 TRF Tandem_Repeat 260000 260024 50 + . . scaffold177 TRF Tandem_Repeat 268719 268781 126 + . . scaffold177 TRF Tandem_Repeat 276417 276650 283 + . . scaffold177 WUBlastX DNA_Harbinger 283562 283834 45 - . . scaffold177 WUBlastX DNA_Harbinger 283628 283807 72 - . . scaffold177 WUBlastX DNA_Harbinger 284677 284724 32 - . . scaffold177 WUBlastX DNA_Harbinger 284736 285125 50 - . . scaffold177 WUBlastX DNA_Harbinger 284880 284993 73 - . . scaffold177 WUBlastX DNA_Harbinger 284880 285107 60 - . . scaffold177 WUBlastX DNA_Harbinger 285109 285282 42 - . . scaffold177 TRF Tandem_Repeat 285593 285625 52 + . . scaffold177 TRF Tandem_Repeat 293618 293671 56 + . . scaffold177 TRF Tandem_Repeat 293621 293670 50 + . . scaffold177 TRF Tandem_Repeat 298129 298166 51 + . . scaffold177 GLEAN promoter 299352 300351 0.498178 - . ID=CGI_10016064; scaffold177 GLEAN promoter 300459 301458 1 + . ID=CGI_10016065; scaffold177 GLEAN mRNA 301459 301890 1 + . ID=CGI_10016065; scaffold177 GLEAN mRNA 302189 324161 0.999349 - . ID=CGI_10016066; scaffold177 TRF Tandem_Repeat 307581 307643 126 + . . scaffold177 WUBlastX LINE_L1 317031 317732 80 + . . scaffold177 WUBlastX LINE_L2 317127 317927 52 + . . scaffold177 GLEAN promoter 324162 325161 0.999349 - . ID=CGI_10016066; scaffold177 TRF Tandem_Repeat 349130 349183 101 + . . scaffold177 TRF Tandem_Repeat 355422 355450 58 + . . scaffold177 WUBlastX LTR_Gypsy 371226 372215 306 - . . scaffold177 WUBlastX LTR_Gypsy 371421 372287 565 - . . scaffold177 WUBlastX DNA_Sola 372903 373229 102 + . . scaffold177 WUBlastX DNA_Sola 376341 377096 315 + . . scaffold177 WUBlastX DNA_Sola 377395 378450 675 + . . scaffold177 WUBlastX DNA_Sola 379696 379815 28 + . . scaffold177 WUBlastX DNA_Sola 379868 380293 114 + . . scaffold177 WUBlastX DNA_hAT-hATw 381591 382190 171 - . . scaffold177 WUBlastX DNA_hAT-hATw 381897 382190 207 - . . scaffold177 WUBlastX DNA_hAT-hATw 382189 382848 366 - . . scaffold177 WUBlastX DNA_hAT-hATw 382854 383162 173 - . . scaffold177 WUBlastX DNA_hAT-hATw 383180 383293 44 - . . scaffold177 WUBlastX DNA_hAT-hATw 383269 383892 32 - . . scaffold177 GLEAN promoter 384460 385459 0.999998 + . ID=CGI_10016067; scaffold177 GLEAN mRNA 385460 386038 0.999998 + . ID=CGI_10016067; scaffold177 WUBlastX LTR_Pao 385484 385687 21 + . . scaffold177 WUBlastX LTR_Pao 386091 386528 103 + . . scaffold177 WUBlastX LTR_Pao 386560 389130 1637 + . . scaffold177 WUBlastX LTR_Pao 389129 389731 123 + . . scaffold177 WUBlastX LTR_Pao 389129 389605 395 + . . scaffold177 GLEAN mRNA 389629 390416 0.987366 - . ID=CGI_10016068; scaffold177 GLEAN promoter 390417 391416 0.987366 - . ID=CGI_10016068; scaffold177 WUBlastX LINE_RTE-X 394110 395795 560 - . . scaffold177 WUBlastX LINE_RTE-X 395795 396193 107 - . . scaffold177 WUBlastX LINE_I 396685 396771 25 - . . scaffold177 WUBlastX LINE_RTE-X 396706 396930 38 - . . scaffold177 GLEAN promoter 404243 405242 0.558382 + . ID=CGI_10016069; scaffold177 TRF Tandem_Repeat 404455 404514 111 + . . scaffold177 GLEAN mRNA 405243 416019 0.558382 + . ID=CGI_10016069; scaffold177 TRF Tandem_Repeat 407213 407278 132 + . . scaffold177 GLEAN mRNA 415246 418497 0.999988 - . ID=CGI_10016070; scaffold177 TRF Tandem_Repeat 417388 417412 50 + . . scaffold177 GLEAN promoter 418498 419497 0.999988 - . ID=CGI_10016070; scaffold177 GLEAN promoter 419319 420318 0.811455 + . ID=CGI_10016071; scaffold177 GLEAN mRNA 420319 434556 0.811455 + . ID=CGI_10016071; scaffold177 TRF Tandem_Repeat 421207 421275 79 + . . scaffold177 TRF Tandem_Repeat 422063 422406 210 + . . scaffold177 GLEAN mRNA 434263 438346 1 - . ID=CGI_10016072; scaffold177 GLEAN promoter 438347 439346 1 - . ID=CGI_10016072; scaffold177 TRF Tandem_Repeat 452088 452490 626 + . . scaffold177 TRF Tandem_Repeat 452088 452481 575 + . . scaffold177 TRF Tandem_Repeat 456415 456469 110 + . . scaffold1770 WUBlastX LINE_RTE-BovB 1218 1268 48 + . . scaffold1770 WUBlastX LINE_RTE-BovB 1229 2155 1027 + . . scaffold1770 WUBlastX LINE_RTE-BovB 2136 3779 2039 + . . scaffold1770 GLEAN promoter 23053 24052 0.727309 + . ID=CGI_10005018; scaffold1770 GLEAN mRNA 24053 43924 0.727309 + . ID=CGI_10005018; scaffold1770 TRF Tandem_Repeat 33361 33397 74 + . . scaffold1770 TRF Tandem_Repeat 50309 50339 53 + . . scaffold1770 GLEAN mRNA 57704 59132 0.352671 - . ID=CGI_10005019; scaffold1770 GLEAN promoter 58261 59260 1 + . ID=CGI_10005020; scaffold1770 GLEAN promoter 59133 60132 0.352671 - . ID=CGI_10005019; scaffold1770 GLEAN mRNA 59261 65729 1 + . ID=CGI_10005020; scaffold1770 TRF Tandem_Repeat 70048 70096 98 + . . scaffold1770 GLEAN mRNA 72715 80290 0.999676 - . ID=CGI_10005021; scaffold1770 TRF Tandem_Repeat 76497 76538 84 + . . scaffold1770 TRF Tandem_Repeat 76574 76623 100 + . . scaffold1770 GLEAN promoter 80291 81290 0.999676 - . ID=CGI_10005021; scaffold1770 GLEAN promoter 82481 83480 1 + . ID=CGI_10005022; scaffold1770 GLEAN mRNA 83481 85420 1 + . ID=CGI_10005022; scaffold1770 GLEAN promoter 84991 85990 0.999351 + . ID=CGI_10005024; scaffold1770 GLEAN mRNA 85924 91010 1 - . ID=CGI_10005023; scaffold1770 GLEAN mRNA 85991 96223 0.999351 + . ID=CGI_10005024; scaffold1770 TRF Tandem_Repeat 87784 87900 126 + . . scaffold1770 GLEAN promoter 91011 92010 1 - . ID=CGI_10005023; scaffold1770 TRF Tandem_Repeat 91767 91844 147 + . . scaffold1770 GLEAN mRNA 98659 98916 0.481188 - . ID=CGI_10005025; scaffold1770 GLEAN promoter 98917 99916 0.481188 - . ID=CGI_10005025; scaffold1770 TRF Tandem_Repeat 103976 104036 122 + . . scaffold1770 GLEAN promoter 107739 108738 0.835213 + . ID=CGI_10005026; scaffold1770 GLEAN mRNA 108739 110192 0.835213 + . ID=CGI_10005026; scaffold1771 GLEAN promoter 507 1506 1 + . ID=CGI_10004381; scaffold1771 TRF Tandem_Repeat 880 1436 288 + . . scaffold1771 TRF Tandem_Repeat 894 1436 255 + . . scaffold1771 GLEAN mRNA 1507 3479 1 + . ID=CGI_10004381; scaffold1771 TRF Tandem_Repeat 1823 1863 82 + . . scaffold1771 GLEAN promoter 7800 8799 1 + . ID=CGI_10004382; scaffold1771 GLEAN mRNA 8800 10301 1 + . ID=CGI_10004382; scaffold1771 TRF Tandem_Repeat 14478 14525 96 + . . scaffold1771 TRF Tandem_Repeat 14670 14705 72 + . . scaffold1771 WUBlastX LTR_Gypsy 21874 22023 23 + . . scaffold1771 GLEAN mRNA 22277 24178 1 - . ID=CGI_10004383; scaffold1771 GLEAN promoter 24179 25178 1 - . ID=CGI_10004383; scaffold1771 TRF Tandem_Repeat 24259 24554 296 + . . scaffold1771 GLEAN mRNA 24790 43934 0.998608 - . ID=CGI_10004384; scaffold1771 TRF Tandem_Repeat 25104 25311 199 + . . scaffold1771 TRF Tandem_Repeat 29987 30577 993 + . . scaffold1771 TRF Tandem_Repeat 32078 32262 144 + . . scaffold1771 WUBlastX DNA_TcMar-Tc2 43160 43573 96 + . . scaffold1771 GLEAN promoter 43935 44934 0.998608 - . ID=CGI_10004384; scaffold1771 GLEAN mRNA 44267 58058 0.839258 - . ID=CGI_10004385; scaffold1771 TRF Tandem_Repeat 49270 49580 541 + . . scaffold1771 TRF Tandem_Repeat 56964 57246 106 + . . scaffold1771 TRF Tandem_Repeat 56970 57153 268 + . . scaffold1771 TRF Tandem_Repeat 57479 57667 360 + . . scaffold1771 GLEAN promoter 58059 59058 0.839258 - . ID=CGI_10004385; scaffold1771 GLEAN promoter 58787 59786 0.963405 + . ID=CGI_10004386; scaffold1771 GLEAN mRNA 59787 61280 0.963405 + . ID=CGI_10004386; scaffold1771 TRF Tandem_Repeat 61638 62484 1229 + . . scaffold1771 TRF Tandem_Repeat 63456 63533 129 + . . scaffold1771 WUBlastX LINE_RTE-X 64906 65178 74 - . . scaffold1771 WUBlastX LINE_RTE-X 64999 65178 115 - . . scaffold1771 TRF Tandem_Repeat 70010 70100 137 + . . scaffold1771 TRF Tandem_Repeat 70010 70100 148 + . . scaffold1771 TRF Tandem_Repeat 71088 71378 415 + . . scaffold1771 TRF Tandem_Repeat 74975 75026 97 + . . scaffold1771 TRF Tandem_Repeat 75468 75534 70 + . . scaffold1771 TRF Tandem_Repeat 75468 75534 71 + . . scaffold1771 TRF Tandem_Repeat 75472 75536 53 + . . scaffold1771 GLEAN mRNA 88638 95441 0.521534 - . ID=CGI_10004387; scaffold1771 TRF Tandem_Repeat 89006 89150 121 + . . scaffold1771 WUBlastX LTR_Gypsy 90200 91474 505 - . . scaffold1771 WUBlastX LTR_Gypsy-Cigr 90425 94066 1830 - . . scaffold1771 WUBlastX LTR_Gypsy 94102 94188 22 - . . scaffold1771 WUBlastX LTR_Gypsy 94132 94944 139 - . . scaffold1771 WUBlastX LTR_Gypsy 94273 95229 48 - . . scaffold1771 WUBlastX LTR_Gypsy 94348 95061 72 - . . scaffold1771 WUBlastX LTR_Gypsy-Cigr 94387 94953 151 - . . scaffold1771 GLEAN promoter 95442 96441 0.521534 - . ID=CGI_10004387; scaffold1772 WUBlastX LTR_Ngaro 248 505 111 + . . scaffold1772 TRF Tandem_Repeat 6890 6915 52 + . . scaffold1772 GLEAN mRNA 15531 17685 0.648545 - . ID=CGI_10014804; scaffold1772 WUBlastX DNA_IS4EU 16220 16363 21 - . . scaffold1772 WUBlastX DNA_IS4EU 16450 17163 81 - . . scaffold1772 GLEAN promoter 17686 18685 0.648545 - . ID=CGI_10014804; scaffold1772 TRF Tandem_Repeat 29857 29948 141 + . . scaffold1772 TRF Tandem_Repeat 30027 30163 125 + . . scaffold1772 TRF Tandem_Repeat 30349 30442 118 + . . scaffold1772 WUBlastX LINE_L2 31501 31710 31 - . . scaffold1772 WUBlastX LINE_L2 31546 31749 41 - . . scaffold1772 WUBlastX LINE_L2 31739 31798 42 - . . scaffold1772 TRF Tandem_Repeat 43005 43806 1141 + . . scaffold1772 TRF Tandem_Repeat 45829 45868 80 + . . scaffold1772 WUBlastX DNA_TcMar-Marin 49508 50032 161 - . . scaffold1772 WUBlastX DNA_TcMar-Marin 49664 49984 186 - . . scaffold1772 WUBlastX DNA_TcMar-Marin 49987 50307 136 - . . scaffold1772 GLEAN mRNA 51944 52682 0.5971 - . ID=CGI_10014805; scaffold1772 GLEAN promoter 52683 53682 0.5971 - . ID=CGI_10014805; scaffold1772 TRF Tandem_Repeat 56473 56553 153 + . . scaffold1772 GLEAN mRNA 72776 73060 0.999372 - . ID=CGI_10014806; scaffold1772 GLEAN promoter 73061 74060 0.999372 - . ID=CGI_10014806; scaffold1772 GLEAN mRNA 74073 74861 0.999451 - . ID=CGI_10014807; scaffold1772 GLEAN promoter 74862 75861 0.999451 - . ID=CGI_10014807; scaffold1772 TRF Tandem_Repeat 79606 79797 188 + . . scaffold1772 TRF Tandem_Repeat 80366 80427 115 + . . scaffold1772 TRF Tandem_Repeat 83584 83626 86 + . . scaffold1772 TRF Tandem_Repeat 84039 84774 1004 + . . scaffold1772 TRF Tandem_Repeat 86192 86249 91 + . . scaffold1772 TRF Tandem_Repeat 86195 86248 56 + . . scaffold1772 TRF Tandem_Repeat 87606 87695 137 + . . scaffold1772 GLEAN promoter 96688 97687 0.618241 + . ID=CGI_10014808; scaffold1772 GLEAN promoter 97304 98303 0.999986 + . ID=CGI_10014809; scaffold1772 GLEAN mRNA 97688 97876 0.618241 + . ID=CGI_10014808; scaffold1772 GLEAN mRNA 98304 98657 0.999986 + . ID=CGI_10014809; scaffold1772 TRF Tandem_Repeat 108192 108279 119 + . . scaffold1772 TRF Tandem_Repeat 117277 117335 50 + . . scaffold1772 TRF Tandem_Repeat 118284 118343 106 + . . scaffold1772 TRF Tandem_Repeat 121714 122446 1125 + . . scaffold1772 TRF Tandem_Repeat 122804 123181 462 + . . scaffold1772 WUBlastX DNA_Sola 129366 129551 76 - . . scaffold1772 WUBlastX DNA_Sola 129715 130341 224 - . . scaffold1772 WUBlastX DNA_Sola 129811 130341 327 - . . scaffold1772 TRF Tandem_Repeat 133709 133738 51 + . . scaffold1772 TRF Tandem_Repeat 136906 138040 1487 + . . scaffold1772 WUBlastX DNA_IS4EU 138318 138449 48 - . . scaffold1772 WUBlastX DNA_IS4EU 138384 138485 40 - . . scaffold1772 WUBlastX DNA_IS4EU 138520 138867 75 - . . scaffold1772 WUBlastX DNA_IS4EU 138787 139254 64 - . . scaffold1772 WUBlastX DNA_IS4EU 139066 139389 54 - . . scaffold1772 WUBlastX DNA_IS4EU 140333 140800 64 - . . scaffold1772 WUBlastX DNA_IS4EU 140612 140935 54 - . . scaffold1772 TRF Tandem_Repeat 142265 142994 549 + . . scaffold1772 TRF Tandem_Repeat 161313 161605 324 + . . scaffold1772 WUBlastX LINE_CR1 162067 162351 60 + . . scaffold1772 WUBlastX LTR_Pao 174518 174874 250 - . . scaffold1772 WUBlastX LTR_Pao 174566 175045 167 - . . scaffold1772 WUBlastX DNA_TcMar-Fot1 176667 177014 68 - . . scaffold1772 TRF Tandem_Repeat 180638 182904 2723 + . . scaffold1772 TRF Tandem_Repeat 180643 182904 2816 + . . scaffold1772 WUBlastX LTR_DIRS 189715 189918 88 - . . scaffold1772 WUBlastX LTR_DIRS 189742 190092 47 - . . scaffold1772 WUBlastX LTR_DIRS 190049 190420 137 - . . scaffold1772 WUBlastX LTR_DIRS 190426 190986 197 - . . scaffold1772 WUBlastX LTR_DIRS 190597 190989 242 - . . scaffold1772 WUBlastX LTR_DIRS 190618 191235 198 - . . scaffold1772 WUBlastX LTR_DIRS 191009 191995 103 - . . scaffold1772 WUBlastX LTR_DIRS 191700 192062 52 - . . scaffold1772 WUBlastX LTR_DIRS 200197 200553 61 - . . scaffold1772 WUBlastX LTR_DIRS 200287 200979 140 - . . scaffold1772 WUBlastX LTR_DIRS 200293 200550 178 - . . scaffold1772 WUBlastX LTR_DIRS 200950 201012 22 - . . scaffold1772 WUBlastX LTR_DIRS 201015 201365 64 - . . scaffold1772 WUBlastX LTR_DIRS 201371 201520 47 - . . scaffold1772 WUBlastX LTR_DIRS 201522 201599 22 - . . scaffold1772 GLEAN mRNA 201858 204314 0.999554 - . ID=CGI_10014812; scaffold1772 WUBlastX LTR_DIRS 202107 202256 59 - . . scaffold1772 WUBlastX LTR_DIRS 202134 202256 69 - . . scaffold1772 WUBlastX LTR_DIRS 202265 202486 28 - . . scaffold1772 WUBlastX LTR_DIRS 202486 202557 35 - . . scaffold1772 WUBlastX LTR_DIRS 202625 203182 61 - . . scaffold1772 TRF Tandem_Repeat 203959 204024 114 + . . scaffold1772 GLEAN promoter 204315 205314 0.999554 - . ID=CGI_10014812; scaffold1772 WUBlastX LTR_Ngaro 212906 213091 84 + . . scaffold1772 WUBlastX LTR_Ngaro 212945 213118 54 + . . scaffold1772 GLEAN mRNA 216457 221308 0.990767 - . ID=CGI_10014813; scaffold1772 TRF Tandem_Repeat 216844 216895 86 + . . scaffold1772 TRF Tandem_Repeat 218370 218435 71 + . . scaffold1772 GLEAN promoter 221309 222308 0.990767 - . ID=CGI_10014813; scaffold1772 GLEAN promoter 224587 225586 0.976266 + . ID=CGI_10014814; scaffold1772 GLEAN mRNA 225587 226603 0.976266 + . ID=CGI_10014814; scaffold1772 TRF Tandem_Repeat 228974 229138 168 + . . scaffold1772 TRF Tandem_Repeat 229542 229615 112 + . . scaffold1772 TRF Tandem_Repeat 229737 229845 148 + . . scaffold1772 TRF Tandem_Repeat 229740 229841 120 + . . scaffold1772 TRF Tandem_Repeat 233702 233727 52 + . . scaffold1772 WUBlastX DNA_TcMar-Tc1 245728 245826 36 + . . scaffold1772 WUBlastX DNA_TcMar-Tc1 245780 246271 37 + . . scaffold1772 WUBlastX DNA_TcMar-Tc1 245843 246193 80 + . . scaffold1772 WUBlastX DNA_TcMar-Tc1 246214 246678 244 + . . scaffold1772 WUBlastX LINE_L1-Tx1 249968 250327 39 - . . scaffold1772 WUBlastX LINE_L1-Tx1 252182 253861 356 - . . scaffold1772 WUBlastX LINE_L1-Tx1 252311 253660 584 - . . scaffold1772 WUBlastX LINE_L1-Tx1 253629 253994 22 - . . scaffold1772 WUBlastX LINE_RTE-RTE 253797 253892 25 - . . scaffold1772 GLEAN mRNA 258616 260919 0.757308 - . ID=CGI_10014815; scaffold1772 GLEAN promoter 260920 261919 0.757308 - . ID=CGI_10014815; scaffold1772 TRF Tandem_Repeat 261887 262343 717 + . . scaffold1772 TRF Tandem_Repeat 262512 262895 599 + . . scaffold1772 TRF Tandem_Repeat 263934 264364 799 + . . scaffold1772 TRF Tandem_Repeat 265264 265306 86 + . . scaffold1772 GLEAN promoter 269783 270782 0.989419 + . ID=CGI_10014816; scaffold1772 TRF Tandem_Repeat 269903 270085 249 + . . scaffold1772 GLEAN mRNA 270783 278258 0.989419 + . ID=CGI_10014816; scaffold1772 TRF Tandem_Repeat 271325 272077 983 + . . scaffold1772 TRF Tandem_Repeat 274462 274592 154 + . . scaffold1772 TRF Tandem_Repeat 278300 278337 76 + . . scaffold1772 TRF Tandem_Repeat 282242 282298 114 + . . scaffold1772 TRF Tandem_Repeat 283778 283832 74 + . . scaffold1772 GLEAN promoter 283913 284912 0.999674 + . ID=CGI_10014817; scaffold1772 TRF Tandem_Repeat 283936 284002 102 + . . scaffold1772 GLEAN mRNA 284913 292386 0.999674 + . ID=CGI_10014817; scaffold1772 TRF Tandem_Repeat 285707 286152 685 + . . scaffold1772 TRF Tandem_Repeat 288529 288755 337 + . . scaffold1772 TRF Tandem_Repeat 289274 289714 491 + . . scaffold1772 TRF Tandem_Repeat 290459 291299 1179 + . . scaffold1772 TRF Tandem_Repeat 291184 291254 52 + . . scaffold1772 GLEAN promoter 292499 293498 1 + . ID=CGI_10014818; scaffold1772 GLEAN mRNA 293499 294193 1 + . ID=CGI_10014818; scaffold1772 GLEAN promoter 293614 294613 0.999998 + . ID=CGI_10014819; scaffold1772 GLEAN mRNA 294614 296655 0.999998 + . ID=CGI_10014819; scaffold1772 TRF Tandem_Repeat 296959 297885 1282 + . . scaffold1772 TRF Tandem_Repeat 296959 297885 1282 + . . scaffold1772 TRF Tandem_Repeat 299407 299448 84 + . . scaffold1772 TRF Tandem_Repeat 309279 309475 358 + . . scaffold1772 TRF Tandem_Repeat 323786 324065 425 + . . scaffold1772 TRF Tandem_Repeat 326001 326367 646 + . . scaffold1772 TRF Tandem_Repeat 326001 327048 528 + . . scaffold1772 TRF Tandem_Repeat 327220 328214 1195 + . . scaffold1772 TRF Tandem_Repeat 350631 350670 50 + . . scaffold1772 WUBlastX LINE_RTE-X 359290 359934 86 - . . scaffold1772 WUBlastX LINE_RTE-X 359410 359931 110 - . . scaffold1772 WUBlastX LINE_RTE-X 359916 360191 83 - . . scaffold1772 WUBlastX LINE_RTE-X 360175 360471 119 - . . scaffold1772 WUBlastX LINE_RTE-X 360441 361838 169 - . . scaffold1772 WUBlastX LINE_RTE-X 360762 361844 236 - . . scaffold1772 WUBlastX LINE_RTE-X 361008 361817 250 - . . scaffold1772 WUBlastX LINE_L1 361966 362691 237 - . . scaffold1772 WUBlastX LINE_L1 362029 362811 106 - . . scaffold1772 TRF Tandem_Repeat 363271 365864 2465 + . . scaffold1772 TRF Tandem_Repeat 364718 364838 51 + . . scaffold1772 TRF Tandem_Repeat 372198 372236 53 + . . scaffold1772 GLEAN mRNA 373105 378781 0.98456 - . ID=CGI_10014820; scaffold1772 TRF Tandem_Repeat 375824 375850 54 + . . scaffold1772 TRF Tandem_Repeat 376165 376200 54 + . . scaffold1772 TRF Tandem_Repeat 378074 378098 50 + . . scaffold1772 GLEAN promoter 378782 379781 0.98456 - . ID=CGI_10014820; scaffold1772 TRF Tandem_Repeat 380186 380254 97 + . . scaffold1772 TRF Tandem_Repeat 382791 382860 104 + . . scaffold1772 TRF Tandem_Repeat 382791 382860 77 + . . scaffold1772 GLEAN promoter 401462 402461 1 + . ID=CGI_10014821; scaffold1772 GLEAN mRNA 402462 402860 1 + . ID=CGI_10014821; scaffold1772 WUBlastX LINE_L1 402678 403574 55 + . . scaffold1772 WUBlastX LINE_L1 402861 403520 227 + . . scaffold1772 WUBlastX LINE_RTE-X 403557 403670 35 + . . scaffold1772 WUBlastX LINE_RTE-X 403598 404269 140 + . . scaffold1772 WUBlastX LINE_RTE-X 403718 404269 189 + . . scaffold1772 WUBlastX LINE_L2 404605 406653 105 + . . scaffold1772 WUBlastX LINE_RTE-X 404980 406824 415 + . . scaffold1772 WUBlastX LINE_RTE-X 405754 406785 485 + . . scaffold1772 WUBlastX LINE_RTE-X 406671 406928 53 + . . scaffold1772 WUBlastX LINE_RTE-X 406877 407668 80 + . . scaffold1772 WUBlastX LINE_RTE-X 406913 407566 131 + . . scaffold1772 TRF Tandem_Repeat 407709 407883 139 + . . scaffold1772 TRF Tandem_Repeat 410874 410900 54 + . . scaffold1772 TRF Tandem_Repeat 411521 411546 52 + . . scaffold1773 TRF Tandem_Repeat 3493 3530 76 + . . scaffold1773 TRF Tandem_Repeat 11488 11547 58 + . . scaffold1773 TRF Tandem_Repeat 22602 23255 838 + . . scaffold1773 WUBlastX DNA_TcMar-m44 23872 24126 71 - . . scaffold1773 WUBlastX DNA_TcMar-m44 23911 24126 79 - . . scaffold1773 WUBlastX DNA_TcMar-m44 24110 24796 366 - . . scaffold1773 WUBlastX LINE_CR1-L2 54495 54650 33 - . . scaffold1773 WUBlastX LINE_CR1 54498 54629 48 - . . scaffold1773 WUBlastX LINE_CR1 54683 54883 32 - . . scaffold1773 WUBlastX LINE_CR1 54743 54880 46 - . . scaffold1773 WUBlastX LINE_L2 54743 54910 41 - . . scaffold1773 WUBlastX LINE_CR1-L2 54891 55160 33 - . . scaffold1773 WUBlastX LINE_CR1-L2 54891 55022 39 - . . scaffold1773 WUBlastX LTR_Pao 73454 73999 132 - . . scaffold1773 WUBlastX LTR_Pao 73454 74320 128 - . . scaffold1773 WUBlastX LTR_Pao 74326 75066 91 - . . scaffold1773 TRF Tandem_Repeat 75774 75912 206 + . . scaffold1773 TRF Tandem_Repeat 78157 78191 52 + . . scaffold1773 TRF Tandem_Repeat 80800 80858 118 + . . scaffold1773 GLEAN mRNA 83391 85072 0.980126 - . ID=CGI_10011225; scaffold1773 WUBlastX LTR_Gypsy 83864 84037 36 - . . scaffold1773 WUBlastX LTR_Copia 83933 84175 67 - . . scaffold1773 WUBlastX LTR_Gypsy-Cigr 83981 84685 184 - . . scaffold1773 GLEAN promoter 85073 86072 0.980126 - . ID=CGI_10011225; scaffold1773 GLEAN promoter 85941 86940 0.45829 + . ID=CGI_10011226; scaffold1773 GLEAN mRNA 86941 91329 0.45829 + . ID=CGI_10011226; scaffold1773 WUBlastX DNA_TcMar-Tc1 92905 93510 116 + . . scaffold1773 WUBlastX DNA_TcMar-Tc1 93043 93510 239 + . . scaffold1773 GLEAN promoter 98353 99352 0.999943 + . ID=CGI_10011227; scaffold1773 GLEAN mRNA 99353 103741 0.999943 + . ID=CGI_10011227; scaffold1773 WUBlastX DNA_TcMar-Marin 111404 111685 58 + . . scaffold1773 GLEAN promoter 112483 113482 0.995285 + . ID=CGI_10011228; scaffold1773 GLEAN mRNA 113483 121773 0.995285 + . ID=CGI_10011228; scaffold1773 WUBlastX LINE_Penelope 115331 115633 39 + . . scaffold1773 WUBlastX LINE_Penelope 115460 115624 69 + . . scaffold1773 WUBlastX LINE_Penelope 115638 116210 133 + . . scaffold1773 TRF Tandem_Repeat 128397 128431 70 + . . scaffold1773 TRF Tandem_Repeat 144796 144985 380 + . . scaffold1773 WUBlastX LTR_Ngaro 154361 155143 80 - . . scaffold1773 WUBlastX LTR_Ngaro 154373 154525 92 - . . scaffold1773 TRF Tandem_Repeat 157343 157383 75 + . . scaffold1773 TRF Tandem_Repeat 163765 163886 235 + . . scaffold1773 WUBlastX LTR_Gypsy 177905 178738 506 - . . scaffold1773 WUBlastX LTR_Gypsy 178040 178936 875 - . . scaffold1773 WUBlastX LTR_Gypsy 178944 179582 172 - . . scaffold1773 WUBlastX LTR_Gypsy 179582 180001 252 - . . scaffold1773 TRF Tandem_Repeat 185164 186115 1344 + . . scaffold1773 WUBlastX LINE_L1-Tx1 190299 190559 39 - . . scaffold1773 WUBlastX LINE_L1 190356 190544 58 - . . scaffold1773 WUBlastX LINE_L1-Tx1 190368 190514 138 - . . scaffold1773 WUBlastX LINE_L1-Tx1 190549 190638 51 - . . scaffold1773 WUBlastX LINE_L1 190570 190734 33 - . . scaffold1773 WUBlastX DNA_En-Spm 192791 193036 95 - . . scaffold1773 WUBlastX DNA_En-Spm 193030 193308 145 - . . scaffold1773 WUBlastX DNA_En-Spm 193072 193425 192 - . . scaffold1773 WUBlastX DNA_En-Spm 194161 194505 100 - . . scaffold1773 WUBlastX DNA_En-Spm 194212 194487 182 - . . scaffold1773 WUBlastX DNA_En-Spm 194466 194627 61 - . . scaffold1773 WUBlastX DNA_En-Spm 194531 194935 128 - . . scaffold1773 WUBlastX DNA_En-Spm 194597 194905 157 - . . scaffold1773 TRF Tandem_Repeat 198068 198109 50 + . . scaffold1773 TRF Tandem_Repeat 210002 210053 97 + . . scaffold1773 WUBlastX DNA_Kolobok 215465 215569 22 + . . scaffold1773 TRF Tandem_Repeat 218007 218050 70 + . . scaffold1773 TRF Tandem_Repeat 218020 218053 50 + . . scaffold1773 TRF Tandem_Repeat 218058 218905 1313 + . . scaffold1773 WUBlastX DNA_Kolobok 222946 223215 134 + . . scaffold1773 TRF Tandem_Repeat 231314 231351 76 + . . scaffold1773 WUBlastX LTR_Pao 248944 249933 1112 + . . scaffold1773 WUBlastX DNA_Sola 251102 251365 51 + . . scaffold1773 WUBlastX DNA_Sola 251374 252405 453 + . . scaffold1773 WUBlastX DNA_Sola 252371 252487 68 + . . scaffold1773 WUBlastX DNA_Sola 252915 253199 23 + . . scaffold1773 WUBlastX DNA_Sola 252969 253205 94 + . . scaffold1773 WUBlastX DNA_Sola 253017 253205 132 + . . scaffold1773 WUBlastX DNA_Sola 253632 253949 44 + . . scaffold1773 WUBlastX DNA_Sola 253689 254006 83 + . . scaffold1773 WUBlastX DNA_Sola 253749 254006 142 + . . scaffold1773 WUBlastX DNA_Sola 254322 254480 56 + . . scaffold1773 WUBlastX DNA_TcMar-Tc1 260104 260226 41 - . . scaffold1773 WUBlastX DNA_TcMar-Tc1 260166 260423 153 - . . scaffold1773 TRF Tandem_Repeat 264794 265299 662 + . . scaffold1773 TRF Tandem_Repeat 268310 268439 75 + . . scaffold1773 WUBlastX DNA_Maverick 271937 272221 156 + . . scaffold1773 WUBlastX DNA_Maverick 272280 272684 148 + . . scaffold1773 GLEAN promoter 272368 273367 0.999991 + . ID=CGI_10011229; scaffold1773 TRF Tandem_Repeat 273083 273179 78 + . . scaffold1773 TRF Tandem_Repeat 273088 273179 53 + . . scaffold1773 GLEAN mRNA 273368 273691 0.999991 + . ID=CGI_10011229; scaffold1773 WUBlastX DNA_Maverick 274020 275144 708 - . . scaffold1773 WUBlastX DNA_Maverick 275060 275338 139 - . . scaffold1773 WUBlastX DNA_Maverick 275323 276267 360 - . . scaffold1773 WUBlastX DNA_Maverick 275710 276279 368 - . . scaffold1773 WUBlastX DNA_Maverick 276312 276533 128 - . . scaffold1773 WUBlastX DNA_Maverick 276459 276572 35 - . . scaffold1773 WUBlastX DNA_Maverick 276459 276548 53 - . . scaffold1773 WUBlastX DNA_Maverick 276820 277218 39 - . . scaffold1773 WUBlastX DNA_Maverick 276820 276987 56 - . . scaffold1773 WUBlastX DNA_Maverick 277203 277751 90 - . . scaffold1773 WUBlastX DNA_Maverick 277263 277718 124 - . . scaffold1773 GLEAN promoter 277274 278273 0.999372 + . ID=CGI_10011230; scaffold1773 GLEAN mRNA 278274 278459 0.999372 + . ID=CGI_10011230; scaffold1773 GLEAN promoter 278538 279537 0.999984 + . ID=CGI_10011231; scaffold1773 GLEAN mRNA 279538 279819 0.999984 + . ID=CGI_10011231; scaffold1774 GLEAN promoter 1 355 1 + . ID=CGI_10006375; scaffold1774 GLEAN mRNA 356 16357 1 + . ID=CGI_10006375; scaffold1774 WUBlastX DNA_IS4EU 29537 29653 28 - . . scaffold1774 WUBlastX DNA_IS4EU 29549 29617 41 - . . scaffold1774 WUBlastX DNA_IS4EU 29638 29799 114 - . . scaffold1774 WUBlastX DNA_IS4EU 29976 30686 82 - . . scaffold1774 WUBlastX DNA_IS4EU 30198 30668 169 - . . scaffold1774 GLEAN promoter 35391 36390 0.563353 + . ID=CGI_10006376; scaffold1774 GLEAN mRNA 36391 50061 0.563353 + . ID=CGI_10006376; scaffold1774 GLEAN mRNA 39460 39843 0.991247 - . ID=CGI_10006377; scaffold1774 GLEAN promoter 39844 40843 0.991247 - . ID=CGI_10006377; scaffold1774 GLEAN mRNA 42485 44430 0.93738 - . ID=CGI_10006378; scaffold1774 GLEAN promoter 44431 45430 0.93738 - . ID=CGI_10006378; scaffold1774 WUBlastX DNA_Kolobok 47754 47813 25 + . . scaffold1774 WUBlastX DNA_Kolobok 48204 49013 75 + . . scaffold1774 WUBlastX DNA_Kolobok 48375 49025 120 + . . scaffold1774 WUBlastX DNA_Kolobok 49027 49986 578 + . . scaffold1774 WUBlastX DNA_Kolobok 49875 50021 32 + . . scaffold1774 WUBlastX DNA_Kolobok 50250 50390 64 - . . scaffold1774 WUBlastX DNA_Kolobok 50589 50819 34 - . . scaffold1774 GLEAN mRNA 54111 56114 0.999375 - . ID=CGI_10006379; scaffold1774 GLEAN promoter 56115 57114 0.999375 - . ID=CGI_10006379; scaffold1774 GLEAN mRNA 58317 58604 1 - . ID=CGI_10006380; scaffold1774 GLEAN promoter 58605 59604 1 - . ID=CGI_10006380; scaffold1774 WUBlastX LINE_RTE-X 61052 61171 28 - . . scaffold1774 WUBlastX LINE_RTE-X 61076 61153 39 - . . scaffold1774 WUBlastX LINE_RTE-X 61515 61727 74 - . . scaffold1774 WUBlastX LINE_RTE-X 61548 61754 80 - . . scaffold1774 WUBlastX LINE_RTE-X 61753 62160 235 - . . scaffold1774 GLEAN mRNA 62955 76692 0.962777 - . ID=CGI_10006381; scaffold1774 TRF Tandem_Repeat 75205 75258 108 + . . scaffold1774 TRF Tandem_Repeat 75258 75309 104 + . . scaffold1774 GLEAN promoter 75931 76930 0.999675 + . ID=CGI_10006382; scaffold1774 GLEAN promoter 76693 77692 0.962777 - . ID=CGI_10006381; scaffold1774 GLEAN mRNA 76931 81732 0.999675 + . ID=CGI_10006382; scaffold1774 TRF Tandem_Repeat 80532 80936 418 + . . scaffold1774 GLEAN promoter 85891 86890 0.615403 + . ID=CGI_10006383; scaffold1774 GLEAN mRNA 86891 90360 0.615403 + . ID=CGI_10006383; scaffold1774 TRF Tandem_Repeat 88016 88146 151 + . . scaffold1774 TRF Tandem_Repeat 88387 88419 66 + . . scaffold1774 TRF Tandem_Repeat 88477 88510 50 + . . scaffold1774 TRF Tandem_Repeat 88512 88537 52 + . . scaffold1774 TRF Tandem_Repeat 89062 89110 89 + . . scaffold1774 TRF Tandem_Repeat 89335 89465 142 + . . scaffold1774 TRF Tandem_Repeat 89336 89465 158 + . . scaffold1774 GLEAN mRNA 90139 98280 0.9628 - . ID=CGI_10006384; scaffold1774 GLEAN promoter 93797 94796 0.724541 + . ID=CGI_10006385; scaffold1774 GLEAN mRNA 94797 116740 0.724541 + . ID=CGI_10006385; scaffold1774 TRF Tandem_Repeat 95063 95133 142 + . . scaffold1774 TRF Tandem_Repeat 96534 96580 94 + . . scaffold1774 TRF Tandem_Repeat 96580 96612 57 + . . scaffold1774 GLEAN promoter 98281 99280 0.9628 - . ID=CGI_10006384; scaffold1774 GLEAN promoter 119054 120053 0.999991 + . ID=CGI_10006386; scaffold1774 GLEAN mRNA 120054 128494 0.999991 + . ID=CGI_10006386; scaffold1774 GLEAN promoter 129206 130205 0.913863 + . ID=CGI_10006387; scaffold1774 GLEAN mRNA 130206 132598 0.913863 + . ID=CGI_10006387; scaffold1774 TRF Tandem_Repeat 130990 131042 54 + . . scaffold1774 GLEAN mRNA 135585 149398 0.9993 - . ID=CGI_10006388; scaffold1774 TRF Tandem_Repeat 142476 142542 89 + . . scaffold1774 TRF Tandem_Repeat 143037 143070 68 + . . scaffold1774 TRF Tandem_Repeat 143271 143336 123 + . . scaffold1774 TRF Tandem_Repeat 147971 148037 80 + . . scaffold1774 GLEAN promoter 149399 150398 0.9993 - . ID=CGI_10006388; scaffold1775 GLEAN mRNA 19344 33504 0.693405 - . ID=CGI_10001871; scaffold1775 GLEAN promoter 33505 34149 0.693405 - . ID=CGI_10001871; scaffold1777 TRF Tandem_Repeat 3478 3549 119 + . . scaffold1777 GLEAN promoter 4363 5362 0.999547 + . ID=CGI_10003152; scaffold1777 GLEAN mRNA 5363 10416 0.999547 + . ID=CGI_10003152; scaffold1777 TRF Tandem_Repeat 8288 8327 80 + . . scaffold1777 WUBlastX LTR_Ngaro 8333 8647 63 + . . scaffold1777 WUBlastX LTR_Ngaro 8712 8855 26 + . . scaffold1777 WUBlastX LTR_Ngaro 8763 8855 55 + . . scaffold1777 WUBlastX LTR_Ngaro 8858 8926 24 + . . scaffold1777 TRF Tandem_Repeat 15780 15808 51 + . . scaffold1777 GLEAN promoter 16200 17199 1 + . ID=CGI_10003153; scaffold1777 GLEAN mRNA 17200 33820 1 + . ID=CGI_10003153; scaffold1777 TRF Tandem_Repeat 34930 34963 50 + . . scaffold1777 WUBlastX LINE_RTE-BovB 37375 37608 61 + . . scaffold1777 WUBlastX LINE_RTE-BovB 37459 37695 37 + . . scaffold1777 TRF Tandem_Repeat 38279 39101 867 + . . scaffold1777 TRF Tandem_Repeat 38279 39101 887 + . . scaffold1777 TRF Tandem_Repeat 38504 39102 633 + . . scaffold1777 WUBlastX LTR_Gypsy 39128 39316 24 + . . scaffold1777 WUBlastX LTR_Gypsy 39230 39373 27 + . . scaffold1777 WUBlastX LTR_Gypsy 39384 40586 112 + . . scaffold1777 WUBlastX LTR_DIRS 39603 40886 711 + . . scaffold1777 WUBlastX LTR_DIRS 40885 41475 286 + . . scaffold1777 WUBlastX LTR_DIRS 40888 41634 227 + . . scaffold1777 WUBlastX LTR_DIRS 41529 42305 221 + . . scaffold1777 WUBlastX LTR_DIRS 42322 42453 82 + . . scaffold1777 WUBlastX LTR_DIRS 42322 42504 78 + . . scaffold1777 TRF Tandem_Repeat 43199 43516 367 + . . scaffold1777 GLEAN mRNA 45705 47135 1 - . ID=CGI_10003154; scaffold1777 GLEAN promoter 47136 48135 1 - . ID=CGI_10003154; scaffold1777 TRF Tandem_Repeat 51014 51085 135 + . . scaffold1777 WUBlastX LINE_CR1 51631 52332 519 - . . scaffold1777 WUBlastX LINE_L2 51811 52425 51 - . . scaffold1777 WUBlastX LINE_Jockey 52427 52504 23 - . . scaffold1777 WUBlastX LINE_CR1-L2 53004 53042 23 - . . scaffold1777 TRF Tandem_Repeat 63252 63320 138 + . . scaffold1778 GLEAN promoter 6274 7273 0.552229 + . ID=CGI_10002477; scaffold1778 GLEAN mRNA 7274 9139 0.552229 + . ID=CGI_10002477; scaffold1778 GLEAN mRNA 11931 31159 0.622734 - . ID=CGI_10002478; scaffold1778 TRF Tandem_Repeat 14009 14088 142 + . . scaffold1778 GLEAN promoter 31160 32159 0.622734 - . ID=CGI_10002478; scaffold1778 TRF Tandem_Repeat 33276 33350 132 + . . scaffold1778 TRF Tandem_Repeat 33685 33719 61 + . . scaffold1778 GLEAN mRNA 34936 42863 0.220539 - . ID=CGI_10002479; scaffold1778 WUBlastX LTR_Copia 41318 41452 29 + . . scaffold1778 WUBlastX LTR_Copia 41330 41422 40 + . . scaffold1778 WUBlastX LTR_Copia 41451 41714 31 + . . scaffold1778 GLEAN promoter 42864 43863 0.220539 - . ID=CGI_10002479; scaffold1778 WUBlastX LTR_Copia 44180 44314 29 + . . scaffold1778 WUBlastX LTR_Copia 44192 44284 40 + . . scaffold1778 WUBlastX LTR_Copia 44313 44576 31 + . . scaffold1779 GLEAN promoter 1 184 1 + . ID=CGI_10001858; scaffold1779 GLEAN mRNA 185 4769 1 + . ID=CGI_10001858; scaffold1779 GLEAN mRNA 6372 6887 1 - . ID=CGI_10001859; scaffold1779 GLEAN promoter 6888 7887 1 - . ID=CGI_10001859; scaffold1779 TRF Tandem_Repeat 21853 21910 82 + . . scaffold1779 WUBlastX DNA_Harbinger 24099 24578 239 + . . scaffold1779 WUBlastX DNA_Harbinger 24562 25098 423 + . . scaffold1779 GLEAN mRNA 25311 28509 0.999221 - . ID=CGI_10001860; scaffold1779 WUBlastX DNA_Harbinger 25733 26212 212 - . . scaffold1779 TRF Tandem_Repeat 26536 26594 118 + . . scaffold1779 GLEAN promoter 26807 27806 1 + . ID=CGI_10001861; scaffold1779 TRF Tandem_Repeat 27023 27086 53 + . . scaffold1779 GLEAN mRNA 27807 28569 1 + . ID=CGI_10001861; scaffold1779 GLEAN promoter 28510 29509 0.999221 - . ID=CGI_10001860; scaffold178 TRF Tandem_Repeat 3206 3236 62 + . . scaffold178 TRF Tandem_Repeat 7291 8082 1078 + . . scaffold178 TRF Tandem_Repeat 8117 8152 63 + . . scaffold178 WUBlastX DNA_TcMar-m44 26785 27030 80 - . . scaffold178 GLEAN promoter 34611 35610 1 + . ID=CGI_10004825; scaffold178 GLEAN mRNA 35611 37132 1 + . ID=CGI_10004825; scaffold178 TRF Tandem_Repeat 42253 42342 82 + . . scaffold178 WUBlastX LINE_CR1 53207 53956 502 + . . scaffold178 GLEAN mRNA 58024 92952 0.668155 - . ID=CGI_10004826; scaffold178 TRF Tandem_Repeat 58965 59025 70 + . . scaffold178 TRF Tandem_Repeat 58965 59013 66 + . . scaffold178 TRF Tandem_Repeat 58969 59027 64 + . . scaffold178 TRF Tandem_Repeat 58971 59026 53 + . . scaffold178 TRF Tandem_Repeat 83794 83865 144 + . . scaffold178 TRF Tandem_Repeat 84900 84941 84 + . . scaffold178 TRF Tandem_Repeat 86352 86416 58 + . . scaffold178 TRF Tandem_Repeat 86448 86527 65 + . . scaffold178 TRF Tandem_Repeat 89786 89850 112 + . . scaffold178 GLEAN promoter 92149 93148 0.59015 + . ID=CGI_10004827; scaffold178 GLEAN promoter 92953 93952 0.668155 - . ID=CGI_10004826; scaffold178 GLEAN mRNA 93149 93718 0.59015 + . ID=CGI_10004827; scaffold178 GLEAN mRNA 95706 112577 0.461285 - . ID=CGI_10004828; scaffold178 TRF Tandem_Repeat 97082 97108 54 + . . scaffold178 WUBlastX LINE_Penelope 103716 104120 65 - . . scaffold178 WUBlastX LINE_Penelope 103887 104150 72 - . . scaffold178 WUBlastX LINE_Penelope 104099 104686 69 - . . scaffold178 WUBlastX LINE_Penelope 104102 104359 96 - . . scaffold178 WUBlastX LINE_Penelope 104689 104937 32 - . . scaffold178 WUBlastX LINE_Penelope 104707 104865 70 - . . scaffold178 WUBlastX LINE_Penelope 104707 104895 45 - . . scaffold178 WUBlastX LINE_Penelope 104931 105107 48 - . . scaffold178 GLEAN promoter 112578 112603 0.461285 - . ID=CGI_10004828; scaffold1780 TRF Tandem_Repeat 10206 10297 157 + . . scaffold1780 TRF Tandem_Repeat 11595 11715 93 + . . scaffold1780 TRF Tandem_Repeat 13795 13838 88 + . . scaffold1780 TRF Tandem_Repeat 16606 16637 55 + . . scaffold1780 TRF Tandem_Repeat 20033 20067 70 + . . scaffold1780 TRF Tandem_Repeat 22232 22267 72 + . . scaffold1780 GLEAN mRNA 22924 28862 0.999676 - . ID=CGI_10014543; scaffold1780 GLEAN promoter 28863 29862 0.999676 - . ID=CGI_10014543; scaffold1780 TRF Tandem_Repeat 30169 30214 92 + . . scaffold1780 GLEAN mRNA 33152 38840 0.761813 - . ID=CGI_10014544; scaffold1780 TRF Tandem_Repeat 33504 33558 110 + . . scaffold1780 GLEAN promoter 38841 39840 0.761813 - . ID=CGI_10014544; scaffold1780 TRF Tandem_Repeat 39387 39445 118 + . . scaffold1780 TRF Tandem_Repeat 39443 39488 92 + . . scaffold1780 GLEAN promoter 51506 52505 0.702367 + . ID=CGI_10014545; scaffold1780 GLEAN mRNA 52506 58345 0.702367 + . ID=CGI_10014545; scaffold1780 GLEAN promoter 57756 58755 0.999643 + . ID=CGI_10014546; scaffold1780 GLEAN mRNA 58756 75212 0.999643 + . ID=CGI_10014546; scaffold1780 TRF Tandem_Repeat 65992 66025 50 + . . scaffold1780 TRF Tandem_Repeat 66328 66367 80 + . . scaffold1780 TRF Tandem_Repeat 66369 66408 57 + . . scaffold1780 TRF Tandem_Repeat 70227 70335 125 + . . scaffold1780 TRF Tandem_Repeat 71036 71094 91 + . . scaffold1780 TRF Tandem_Repeat 71040 71101 88 + . . scaffold1780 TRF Tandem_Repeat 71259 71514 494 + . . scaffold1780 TRF Tandem_Repeat 71287 71489 187 + . . scaffold1780 GLEAN mRNA 75014 92866 0.99999 - . ID=CGI_10014547; scaffold1780 TRF Tandem_Repeat 79344 79373 60 + . . scaffold1780 TRF Tandem_Repeat 79724 80097 658 + . . scaffold1780 GLEAN promoter 92202 93201 0.618241 + . ID=CGI_10014548; scaffold1780 GLEAN promoter 92867 93866 0.99999 - . ID=CGI_10014547; scaffold1780 GLEAN mRNA 93202 93375 0.618241 + . ID=CGI_10014548; scaffold1780 TRF Tandem_Repeat 93400 93445 83 + . . scaffold1780 TRF Tandem_Repeat 95240 95282 86 + . . scaffold1780 GLEAN mRNA 107008 115035 0.543 - . ID=CGI_10014549; scaffold1780 WUBlastX LINE_CR1 110602 110781 32 + . . scaffold1780 WUBlastX LINE_L1 111354 112319 69 + . . scaffold1780 WUBlastX LINE_RTE-BovB 111588 112832 981 + . . scaffold1780 WUBlastX LINE_RTE-BovB 112718 112978 181 + . . scaffold1780 TRF Tandem_Repeat 113538 113567 60 + . . scaffold1780 GLEAN promoter 115036 116035 0.543 - . ID=CGI_10014549; scaffold1780 TRF Tandem_Repeat 117449 117481 57 + . . scaffold1780 WUBlastX LINE_Penelope 120313 120624 20 + . . scaffold1780 WUBlastX LINE_L1-Tx1 129010 129258 44 + . . scaffold1780 WUBlastX LINE_L1 129833 130153 55 + . . scaffold1780 WUBlastX LINE_L1-Tx1 129836 130039 111 + . . scaffold1780 WUBlastX LINE_L2 131053 131697 275 + . . scaffold1780 WUBlastX LINE_L2 131732 131833 45 + . . scaffold1780 WUBlastX LTR_Gypsy 133098 133136 20 - . . scaffold1780 WUBlastX LTR_Gypsy 133172 133957 120 - . . scaffold1780 WUBlastX LTR_Gypsy 133313 133963 481 - . . scaffold1780 WUBlastX LTR_Gypsy 133906 134526 219 - . . scaffold1780 WUBlastX LTR_Gypsy 133969 134916 188 - . . scaffold1780 WUBlastX LTR_Gypsy 135510 136238 55 - . . scaffold1780 WUBlastX LTR_Gypsy 135759 136421 44 - . . scaffold1780 GLEAN mRNA 144324 154200 0.544852 - . ID=CGI_10014550; scaffold1780 TRF Tandem_Repeat 148858 148889 64 + . . scaffold1780 TRF Tandem_Repeat 149712 150370 716 + . . scaffold1780 GLEAN promoter 154201 155200 0.544852 - . ID=CGI_10014550; scaffold1780 GLEAN mRNA 156950 163568 1 - . ID=CGI_10014551; scaffold1780 GLEAN promoter 163569 164568 1 - . ID=CGI_10014551; scaffold1780 TRF Tandem_Repeat 164223 164857 999 + . . scaffold1780 TRF Tandem_Repeat 166803 166849 94 + . . scaffold1780 GLEAN mRNA 168944 186770 0.814009 - . ID=CGI_10014552; scaffold1780 TRF Tandem_Repeat 169763 170017 429 + . . scaffold1780 TRF Tandem_Repeat 170975 173938 4235 + . . scaffold1780 TRF Tandem_Repeat 180789 180946 235 + . . scaffold1780 GLEAN promoter 186771 187770 0.814009 - . ID=CGI_10014552; scaffold1780 GLEAN promoter 188546 189545 0.999675 + . ID=CGI_10014553; scaffold1780 GLEAN mRNA 189546 216954 0.999675 + . ID=CGI_10014553; scaffold1780 TRF Tandem_Repeat 192526 192699 231 + . . scaffold1780 TRF Tandem_Repeat 193236 193998 642 + . . scaffold1780 TRF Tandem_Repeat 193236 193989 827 + . . scaffold1780 TRF Tandem_Repeat 194173 194342 189 + . . scaffold1780 TRF Tandem_Repeat 195698 195753 87 + . . scaffold1780 TRF Tandem_Repeat 200703 200876 137 + . . scaffold1780 TRF Tandem_Repeat 202899 203530 617 + . . scaffold1780 TRF Tandem_Repeat 202899 203530 617 + . . scaffold1780 TRF Tandem_Repeat 207945 208860 1309 + . . scaffold1780 TRF Tandem_Repeat 208856 209247 511 + . . scaffold1780 TRF Tandem_Repeat 208856 208960 174 + . . scaffold1780 TRF Tandem_Repeat 208961 209247 421 + . . scaffold1780 TRF Tandem_Repeat 213145 213710 718 + . . scaffold1780 TRF Tandem_Repeat 213704 213739 72 + . . scaffold1780 TRF Tandem_Repeat 214371 214629 310 + . . scaffold1780 WUBlastX DNA_TcMar-Tc1 219379 219855 302 - . . scaffold1780 WUBlastX DNA_TcMar-Tc1 219854 220255 118 - . . scaffold1780 WUBlastX DNA_TcMar-Tc1 220252 220350 33 - . . scaffold1780 TRF Tandem_Repeat 224395 224501 72 + . . scaffold1780 GLEAN promoter 224640 225639 0.9993 + . ID=CGI_10014554; scaffold1780 GLEAN mRNA 225640 247673 0.9993 + . ID=CGI_10014554; scaffold1780 TRF Tandem_Repeat 230062 230165 156 + . . scaffold1780 TRF Tandem_Repeat 232619 233689 2007 + . . scaffold1780 TRF Tandem_Repeat 236040 236192 279 + . . scaffold1780 TRF Tandem_Repeat 237075 240441 5357 + . . scaffold1780 TRF Tandem_Repeat 239530 239717 82 + . . scaffold1780 TRF Tandem_Repeat 249830 249860 62 + . . scaffold1780 GLEAN mRNA 252105 264653 0.999675 - . ID=CGI_10014555; scaffold1780 TRF Tandem_Repeat 256296 257172 1262 + . . scaffold1780 TRF Tandem_Repeat 259842 259965 59 + . . scaffold1780 TRF Tandem_Repeat 259842 260142 404 + . . scaffold1780 TRF Tandem_Repeat 260151 261061 1267 + . . scaffold1780 TRF Tandem_Repeat 260151 261061 1247 + . . scaffold1780 TRF Tandem_Repeat 260637 261009 109 + . . scaffold1780 TRF Tandem_Repeat 261428 262895 279 + . . scaffold1780 TRF Tandem_Repeat 261541 262896 1957 + . . scaffold1780 TRF Tandem_Repeat 261541 262896 1957 + . . scaffold1780 TRF Tandem_Repeat 261813 262038 67 + . . scaffold1780 TRF Tandem_Repeat 261932 262060 87 + . . scaffold1780 TRF Tandem_Repeat 262728 262857 86 + . . scaffold1780 GLEAN promoter 264654 265653 0.999675 - . ID=CGI_10014555; scaffold1780 GLEAN mRNA 265109 267707 1 - . ID=CGI_10014556; scaffold1780 TRF Tandem_Repeat 265557 265950 487 + . . scaffold1780 TRF Tandem_Repeat 265782 265911 86 + . . scaffold1780 GLEAN promoter 267708 268707 1 - . ID=CGI_10014556; scaffold1780 TRF Tandem_Repeat 269562 270636 1450 + . . scaffold1780 TRF Tandem_Repeat 269562 270636 1464 + . . scaffold1780 TRF Tandem_Repeat 270636 270797 204 + . . scaffold1780 GLEAN promoter 271741 272740 0.999929 + . ID=CGI_10014557; scaffold1780 GLEAN mRNA 272741 284322 0.999929 + . ID=CGI_10014557; scaffold1780 TRF Tandem_Repeat 279201 279304 76 + . . scaffold1780 TRF Tandem_Repeat 279211 279312 78 + . . scaffold1780 TRF Tandem_Repeat 281320 282142 701 + . . scaffold1780 TRF Tandem_Repeat 283434 283612 270 + . . scaffold1780 TRF Tandem_Repeat 287597 287753 278 + . . scaffold1780 GLEAN promoter 293355 294354 1 + . ID=CGI_10014558; scaffold1780 GLEAN mRNA 294355 298221 1 + . ID=CGI_10014558; scaffold1780 GLEAN promoter 299189 300188 1 + . ID=CGI_10014559; scaffold1780 GLEAN mRNA 300189 302082 1 + . ID=CGI_10014559; scaffold1780 GLEAN mRNA 305776 312479 1 - . ID=CGI_10014560; scaffold1780 GLEAN promoter 312480 313479 1 - . ID=CGI_10014560; scaffold1780 GLEAN promoter 313430 314429 1 + . ID=CGI_10014561; scaffold1780 GLEAN mRNA 314430 317340 1 + . ID=CGI_10014561; scaffold1780 WUBlastX LINE_Penelope 322343 322492 62 + . . scaffold1780 GLEAN mRNA 334581 339586 0.999676 - . ID=CGI_10014562; scaffold1780 GLEAN promoter 338717 339716 0.84113 + . ID=CGI_10014563; scaffold1780 GLEAN promoter 339587 340586 0.999676 - . ID=CGI_10014562; scaffold1780 GLEAN mRNA 339717 354230 0.84113 + . ID=CGI_10014563; scaffold1780 TRF Tandem_Repeat 340131 340189 118 + . . scaffold1780 TRF Tandem_Repeat 346023 346053 62 + . . scaffold1780 TRF Tandem_Repeat 348675 348855 147 + . . scaffold1780 TRF Tandem_Repeat 348712 348836 134 + . . scaffold1780 TRF Tandem_Repeat 350792 350831 80 + . . scaffold1780 TRF Tandem_Repeat 351643 351667 50 + . . scaffold1780 GLEAN promoter 356527 357526 0.540729 + . ID=CGI_10014564; scaffold1780 GLEAN mRNA 357527 366900 0.540729 + . ID=CGI_10014564; scaffold1780 GLEAN promoter 366452 367451 0.558382 + . ID=CGI_10014565; scaffold1780 GLEAN mRNA 367452 370179 0.558382 + . ID=CGI_10014565; scaffold1780 GLEAN promoter 370431 371430 0.777576 + . ID=CGI_10014566; scaffold1780 GLEAN mRNA 371431 372554 0.777576 + . ID=CGI_10014566; scaffold1780 TRF Tandem_Repeat 381943 381969 54 + . . scaffold1780 TRF Tandem_Repeat 381995 382025 62 + . . scaffold1780 TRF Tandem_Repeat 382146 382200 74 + . . scaffold1780 TRF Tandem_Repeat 382150 382188 51 + . . scaffold1780 TRF Tandem_Repeat 383176 383213 76 + . . scaffold1780 TRF Tandem_Repeat 383225 383258 68 + . . scaffold1780 GLEAN promoter 395772 396771 0.987401 + . ID=CGI_10014567; scaffold1780 GLEAN mRNA 396772 401610 0.987401 + . ID=CGI_10014567; scaffold1780 TRF Tandem_Repeat 402422 402763 576 + . . scaffold1781 GLEAN mRNA 12674 18117 0.363268 - . ID=CGI_10004732; scaffold1781 GLEAN promoter 17056 18055 0.99831 + . ID=CGI_10004733; scaffold1781 GLEAN mRNA 18056 29001 0.99831 + . ID=CGI_10004733; scaffold1781 GLEAN promoter 18118 19117 0.363268 - . ID=CGI_10004732; scaffold1781 GLEAN promoter 29764 30763 0.800884 + . ID=CGI_10004734; scaffold1781 GLEAN mRNA 30764 37651 0.800884 + . ID=CGI_10004734; scaffold1781 TRF Tandem_Repeat 34398 34455 73 + . . scaffold1781 TRF Tandem_Repeat 34399 34452 56 + . . scaffold1781 TRF Tandem_Repeat 35878 36755 1248 + . . scaffold1781 GLEAN promoter 39535 40534 0.510058 + . ID=CGI_10004735; scaffold1781 GLEAN mRNA 40535 43298 0.510058 + . ID=CGI_10004735; scaffold1781 GLEAN mRNA 44680 65250 0.836164 - . ID=CGI_10004736; scaffold1781 TRF Tandem_Repeat 63389 63434 92 + . . scaffold1781 GLEAN promoter 65251 66250 0.836164 - . ID=CGI_10004736; scaffold1781 GLEAN mRNA 66847 80992 0.844806 - . ID=CGI_10004737; scaffold1781 TRF Tandem_Repeat 70564 70611 60 + . . scaffold1781 TRF Tandem_Repeat 70564 70611 60 + . . scaffold1781 TRF Tandem_Repeat 70564 70611 60 + . . scaffold1781 TRF Tandem_Repeat 70961 71010 100 + . . scaffold1781 TRF Tandem_Repeat 78085 78140 112 + . . scaffold1781 GLEAN promoter 80993 81992 0.844806 - . ID=CGI_10004737; scaffold1781 TRF Tandem_Repeat 83227 83259 66 + . . scaffold1781 GLEAN promoter 86193 87192 0.836206 + . ID=CGI_10004738; scaffold1781 GLEAN mRNA 87193 88047 0.836206 + . ID=CGI_10004738; scaffold1781 TRF Tandem_Repeat 89220 89314 64 + . . scaffold1781 TRF Tandem_Repeat 89258 89314 51 + . . scaffold1781 TRF Tandem_Repeat 89997 90053 69 + . . scaffold1781 WUBlastX LINE_L1 105138 105662 74 + . . scaffold1781 WUBlastX LINE_L1-Tx1 105291 105662 124 + . . scaffold1781 WUBlastX LINE_L1-Tx1 105637 105762 20 + . . scaffold1782 WUBlastX LINE_L2 240 575 36 - . . scaffold1782 WUBlastX LINE_L1 273 632 29 - . . scaffold1782 TRF Tandem_Repeat 1379 1429 102 + . . scaffold1782 GLEAN mRNA 7792 19893 0.99249 - . ID=CGI_10004240; scaffold1782 TRF Tandem_Repeat 10152 10300 97 + . . scaffold1782 TRF Tandem_Repeat 10216 10362 73 + . . scaffold1782 TRF Tandem_Repeat 11327 12088 735 + . . scaffold1782 TRF Tandem_Repeat 12146 12189 72 + . . scaffold1782 WUBlastX DNA_Kolobok 17769 18077 82 - . . scaffold1782 WUBlastX DNA_Kolobok 18615 18878 41 - . . scaffold1782 WUBlastX DNA_Kolobok 18663 18872 78 - . . scaffold1782 WUBlastX DNA_Kolobok 19115 19231 37 - . . scaffold1782 GLEAN promoter 19894 20893 0.99249 - . ID=CGI_10004240; scaffold1782 TRF Tandem_Repeat 21520 21969 715 + . . scaffold1782 TRF Tandem_Repeat 25634 27203 1487 + . . scaffold1782 TRF Tandem_Repeat 26255 26437 64 + . . scaffold1782 GLEAN promoter 26311 27310 0.718451 + . ID=CGI_10004241; scaffold1782 GLEAN mRNA 27311 46530 0.718451 + . ID=CGI_10004241; scaffold1782 TRF Tandem_Repeat 30764 31382 812 + . . scaffold1782 TRF Tandem_Repeat 32299 32623 321 + . . scaffold1782 WUBlastX DNA_Crypton 35297 35536 78 - . . scaffold1782 WUBlastX DNA_Crypton 35354 35971 338 - . . scaffold1782 TRF Tandem_Repeat 40371 40555 318 + . . scaffold1782 TRF Tandem_Repeat 41211 41616 794 + . . scaffold1782 TRF Tandem_Repeat 42319 42668 691 + . . scaffold1782 TRF Tandem_Repeat 44003 44512 822 + . . scaffold1782 GLEAN mRNA 56523 57695 0.99963 - . ID=CGI_10004242; scaffold1782 GLEAN promoter 57696 58695 0.99963 - . ID=CGI_10004242; scaffold1782 TRF Tandem_Repeat 61623 62026 105 + . . scaffold1782 TRF Tandem_Repeat 61883 62197 176 + . . scaffold1782 TRF Tandem_Repeat 62082 62197 94 + . . scaffold1782 TRF Tandem_Repeat 62456 63066 954 + . . scaffold1782 TRF Tandem_Repeat 62543 63066 850 + . . scaffold1782 WUBlastX LINE_RTE-BovB 64202 64339 120 + . . scaffold1782 GLEAN promoter 69194 70193 0.996466 + . ID=CGI_10004243; scaffold1782 GLEAN mRNA 70194 71174 0.996466 + . ID=CGI_10004243; scaffold1782 GLEAN promoter 73082 74081 0.569703 + . ID=CGI_10004244; scaffold1782 GLEAN mRNA 74082 77423 0.569703 + . ID=CGI_10004244; scaffold1782 GLEAN mRNA 77876 82316 0.811456 - . ID=CGI_10004245; scaffold1782 GLEAN promoter 82317 83316 0.811456 - . ID=CGI_10004245; scaffold1782 TRF Tandem_Repeat 87312 87372 122 + . . scaffold1782 WUBlastX DNA_TcMar-Fot1 87810 87935 32 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88108 88389 102 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88207 88455 73 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88389 88484 32 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88693 89001 27 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88765 88998 74 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 88795 89169 36 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 89309 89533 56 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 89333 89491 57 - . . scaffold1782 WUBlastX DNA_TcMar-Fot1 89992 90225 60 - . . scaffold1783 TRF Tandem_Repeat 3943 3996 108 + . . scaffold1783 GLEAN mRNA 10375 13856 0.990326 - . ID=CGI_10001634; scaffold1783 GLEAN promoter 13857 14856 0.990326 - . ID=CGI_10001634; scaffold1783 TRF Tandem_Repeat 14356 14383 56 + . . scaffold1783 TRF Tandem_Repeat 15121 15151 53 + . . scaffold1783 TRF Tandem_Repeat 15187 15231 65 + . . scaffold1783 TRF Tandem_Repeat 15943 16039 62 + . . scaffold1783 TRF Tandem_Repeat 21960 21997 76 + . . scaffold1783 WUBlastX LTR_ERV1 24950 25411 60 + . . scaffold1783 WUBlastX LINE_L1-Tx1 25031 25816 126 + . . scaffold1783 WUBlastX LINE_L1 25163 25813 189 + . . scaffold1783 WUBlastX LINE_CR1 26039 26491 73 + . . scaffold1783 WUBlastX LINE_RTE-X 26150 26551 91 + . . scaffold1784 TRF Tandem_Repeat 1399 1452 99 + . . scaffold1784 WUBlastX LINE_Penelope 24873 25043 90 - . . scaffold1784 TRF Tandem_Repeat 28297 28350 108 + . . scaffold1784 TRF Tandem_Repeat 32964 33070 126 + . . scaffold1784 TRF Tandem_Repeat 39083 39126 52 + . . scaffold1784 TRF Tandem_Repeat 39084 39121 58 + . . scaffold1784 TRF Tandem_Repeat 45385 45492 64 + . . scaffold1784 WUBlastX LTR_DIRS? 57694 57921 118 - . . scaffold1784 WUBlastX LTR_DIRS 57968 58627 101 - . . scaffold1784 WUBlastX LTR_DIRS 59171 59623 44 - . . scaffold1785 TRF Tandem_Repeat 5026 5071 76 + . . scaffold1785 TRF Tandem_Repeat 5027 5071 56 + . . scaffold1785 GLEAN mRNA 6322 29997 0.294917 - . ID=CGI_10024349; scaffold1785 WUBlastX LINE_L1 20416 21093 45 + . . scaffold1785 WUBlastX LINE_L1 20431 20874 151 + . . scaffold1785 WUBlastX LINE_L2 20431 21000 110 + . . scaffold1785 WUBlastX LINE_I 21339 21446 21 + . . scaffold1785 WUBlastX LINE_RTE-X 22066 22365 87 + . . scaffold1785 WUBlastX LINE_CR1 22157 22786 103 + . . scaffold1785 WUBlastX LINE_L2 22271 22798 152 + . . scaffold1785 WUBlastX LINE_RTE-X 22358 22780 168 + . . scaffold1785 WUBlastX LINE_RTE-X 22792 23715 162 + . . scaffold1785 WUBlastX LINE_RTE-X 22792 23523 162 + . . scaffold1785 WUBlastX LINE_RTE-X 22795 23307 164 + . . scaffold1785 WUBlastX LINE_RTE-X 22795 24087 108 + . . scaffold1785 GLEAN promoter 29998 30997 0.294917 - . ID=CGI_10024349; scaffold1785 TRF Tandem_Repeat 30810 30844 54 + . . scaffold1785 TRF Tandem_Repeat 30937 30984 96 + . . scaffold1785 WUBlastX DNA_IS4EU 32084 32296 79 - . . scaffold1785 WUBlastX DNA_IS4EU 32507 32605 27 - . . scaffold1785 WUBlastX DNA_Kolobok-IS4 32549 32605 47 - . . scaffold1785 GLEAN mRNA 32641 38261 0.430327 - . ID=CGI_10024350; scaffold1785 WUBlastX DNA_IS4EU 33190 33297 23 - . . scaffold1785 WUBlastX LINE_RTE-X 35066 37384 1064 + . . scaffold1785 GLEAN promoter 37831 38830 0.99998 + . ID=CGI_10024351; scaffold1785 GLEAN promoter 38262 39261 0.430327 - . ID=CGI_10024350; scaffold1785 GLEAN mRNA 38831 39463 0.99998 + . ID=CGI_10024351; scaffold1785 WUBlastX DNA_Crypton 41641 42270 183 - . . scaffold1785 TRF Tandem_Repeat 43993 44098 164 + . . scaffold1785 WUBlastX LTR_Gypsy 45286 47445 179 - . . scaffold1785 WUBlastX LTR_Gypsy 45520 47016 611 - . . scaffold1785 WUBlastX LTR_Gypsy 47142 48815 726 - . . scaffold1785 WUBlastX LTR_Gypsy 47439 49325 936 - . . scaffold1785 WUBlastX LTR_Gypsy 49056 49472 41 - . . scaffold1785 GLEAN mRNA 52223 53461 1 - . ID=CGI_10024352; scaffold1785 GLEAN promoter 53110 54109 0.776584 + . ID=CGI_10024353; scaffold1785 GLEAN promoter 53462 54461 1 - . ID=CGI_10024352; scaffold1785 GLEAN mRNA 54110 54283 0.776584 + . ID=CGI_10024353; scaffold1785 GLEAN promoter 55044 56043 1 + . ID=CGI_10024354; scaffold1785 GLEAN mRNA 56044 60665 1 + . ID=CGI_10024354; scaffold1785 TRF Tandem_Repeat 62946 63609 983 + . . scaffold1785 GLEAN mRNA 65260 86762 0.990934 - . ID=CGI_10024355; scaffold1785 TRF Tandem_Repeat 67147 67396 437 + . . scaffold1785 WUBlastX LINE_I 72975 73493 22 - . . scaffold1785 GLEAN promoter 86763 87762 0.990934 - . ID=CGI_10024355; scaffold1785 GLEAN mRNA 86845 101115 0.878427 - . ID=CGI_10024356; scaffold1785 TRF Tandem_Repeat 94067 94862 1251 + . . scaffold1785 TRF Tandem_Repeat 94893 94948 67 + . . scaffold1785 TRF Tandem_Repeat 98498 98587 57 + . . scaffold1785 TRF Tandem_Repeat 98525 98585 52 + . . scaffold1785 GLEAN promoter 101116 102115 0.878427 - . ID=CGI_10024356; scaffold1785 GLEAN mRNA 107835 122657 0.998538 - . ID=CGI_10024357; scaffold1785 GLEAN promoter 114447 115446 0.999996 + . ID=CGI_10024358; scaffold1785 GLEAN mRNA 115447 115743 0.999996 + . ID=CGI_10024358; scaffold1785 GLEAN promoter 122658 123657 0.998538 - . ID=CGI_10024357; scaffold1785 GLEAN promoter 124515 125514 0.999994 + . ID=CGI_10024359; scaffold1785 GLEAN mRNA 125515 126236 0.999994 + . ID=CGI_10024359; scaffold1785 GLEAN promoter 131338 132337 0.990978 + . ID=CGI_10024360; scaffold1785 GLEAN mRNA 132338 135669 0.990978 + . ID=CGI_10024360; scaffold1785 TRF Tandem_Repeat 133603 133646 52 + . . scaffold1785 TRF Tandem_Repeat 133603 133650 69 + . . scaffold1785 GLEAN mRNA 155619 158924 1 - . ID=CGI_10024361; scaffold1785 GLEAN promoter 158925 159924 1 - . ID=CGI_10024361; scaffold1785 GLEAN promoter 160099 161098 1 + . ID=CGI_10024362; scaffold1785 GLEAN mRNA 161099 163393 1 + . ID=CGI_10024362; scaffold1785 WUBlastX LINE_RTE-X 164653 165066 44 + . . scaffold1785 WUBlastX LINE_RTE-X 164851 165063 93 + . . scaffold1785 WUBlastX LINE_RTE-X 165011 165274 80 + . . scaffold1785 WUBlastX LINE_RTE-X 165158 165310 66 + . . scaffold1785 WUBlastX LINE_RTE-X 165605 166144 102 + . . scaffold1785 WUBlastX LINE_RTE-X 165605 166027 132 + . . scaffold1785 GLEAN mRNA 172249 178974 1 - . ID=CGI_10024363; scaffold1785 GLEAN promoter 178975 179974 1 - . ID=CGI_10024363; scaffold1785 GLEAN mRNA 182742 189706 0.706791 - . ID=CGI_10024364; scaffold1785 GLEAN promoter 189707 190706 0.706791 - . ID=CGI_10024364; scaffold1785 GLEAN promoter 191986 192985 1 + . ID=CGI_10024365; scaffold1785 GLEAN mRNA 192986 206656 1 + . ID=CGI_10024365; scaffold1785 TRF Tandem_Repeat 195906 196508 623 + . . scaffold1785 TRF Tandem_Repeat 201133 201495 572 + . . scaffold1785 TRF Tandem_Repeat 201273 201366 60 + . . scaffold1785 GLEAN mRNA 203571 206872 1 - . ID=CGI_10024366; scaffold1785 GLEAN promoter 205918 206917 0.998306 + . ID=CGI_10024367; scaffold1785 GLEAN promoter 206873 207872 1 - . ID=CGI_10024366; scaffold1785 GLEAN mRNA 206918 217647 0.998306 + . ID=CGI_10024367; scaffold1785 GLEAN mRNA 219140 227952 0.997365 - . ID=CGI_10024368; scaffold1785 TRF Tandem_Repeat 227537 227600 101 + . . scaffold1785 GLEAN promoter 227953 228952 0.997365 - . ID=CGI_10024368; scaffold1785 GLEAN promoter 241131 242130 0.526332 + . ID=CGI_10024369; scaffold1785 GLEAN mRNA 242131 274696 0.526332 + . ID=CGI_10024369; scaffold1785 TRF Tandem_Repeat 243690 243733 61 + . . scaffold1785 TRF Tandem_Repeat 243691 243729 51 + . . scaffold1785 TRF Tandem_Repeat 243741 244595 1550 + . . scaffold1785 TRF Tandem_Repeat 245293 245546 472 + . . scaffold1785 TRF Tandem_Repeat 246068 246096 58 + . . scaffold1785 GLEAN mRNA 253119 260355 1 - . ID=CGI_10024370; scaffold1785 GLEAN promoter 260356 261355 1 - . ID=CGI_10024370; scaffold1785 GLEAN mRNA 264808 265130 0.484671 - . ID=CGI_10024371; scaffold1785 GLEAN promoter 265131 266130 0.484671 - . ID=CGI_10024371; scaffold1785 GLEAN mRNA 265476 269137 0.999999 - . ID=CGI_10024372; scaffold1785 GLEAN promoter 269138 270137 0.999999 - . ID=CGI_10024372; scaffold1785 TRF Tandem_Repeat 270418 270458 82 + . . scaffold1785 GLEAN mRNA 275135 278533 0.999463 - . ID=CGI_10024373; scaffold1785 GLEAN promoter 278534 279533 0.999463 - . ID=CGI_10024373; scaffold1785 TRF Tandem_Repeat 286618 286784 158 + . . scaffold1785 GLEAN mRNA 289287 291968 0.844301 - . ID=CGI_10024374; scaffold1785 GLEAN promoter 291969 292968 0.844301 - . ID=CGI_10024374; scaffold1785 GLEAN promoter 292049 293048 1 + . ID=CGI_10024375; scaffold1785 GLEAN mRNA 293049 295426 1 + . ID=CGI_10024375; scaffold1785 GLEAN mRNA 297367 301565 1 - . ID=CGI_10024376; scaffold1785 TRF Tandem_Repeat 298921 299047 209 + . . scaffold1785 TRF Tandem_Repeat 301030 301100 72 + . . scaffold1785 GLEAN promoter 301566 302565 1 - . ID=CGI_10024376; scaffold1785 GLEAN promoter 324466 325465 0.999675 + . ID=CGI_10024377; scaffold1785 GLEAN mRNA 325466 328664 0.999675 + . ID=CGI_10024377; scaffold1785 GLEAN promoter 332681 333680 0.999676 + . ID=CGI_10024378; scaffold1785 GLEAN mRNA 333681 336607 0.999676 + . ID=CGI_10024378; scaffold1785 GLEAN promoter 339416 340415 1 + . ID=CGI_10024379; scaffold1785 GLEAN mRNA 340416 341263 1 + . ID=CGI_10024379; scaffold1785 TRF Tandem_Repeat 344241 345124 1056 + . . scaffold1785 GLEAN promoter 345617 346616 0.999676 + . ID=CGI_10024380; scaffold1785 GLEAN mRNA 346617 350846 0.999676 + . ID=CGI_10024380; scaffold1785 GLEAN promoter 350210 351209 0.728523 + . ID=CGI_10024381; scaffold1785 GLEAN mRNA 351210 365753 0.728523 + . ID=CGI_10024381; scaffold1785 GLEAN mRNA 367114 389612 0.575961 - . ID=CGI_10024382; scaffold1785 TRF Tandem_Repeat 378113 378458 584 + . . scaffold1785 TRF Tandem_Repeat 378522 378691 331 + . . scaffold1785 TRF Tandem_Repeat 379506 379647 275 + . . scaffold1785 TRF Tandem_Repeat 385092 385123 64 + . . scaffold1785 GLEAN promoter 389613 390612 0.575961 - . ID=CGI_10024382; scaffold1785 GLEAN mRNA 393643 409357 0.765808 - . ID=CGI_10024383; scaffold1785 TRF Tandem_Repeat 393827 394069 432 + . . scaffold1785 TRF Tandem_Repeat 401993 402053 122 + . . scaffold1785 GLEAN promoter 408073 409072 1 + . ID=CGI_10024384; scaffold1785 GLEAN mRNA 409073 415432 1 + . ID=CGI_10024384; scaffold1785 GLEAN promoter 409358 410357 0.765808 - . ID=CGI_10024383; scaffold1785 TRF Tandem_Repeat 410733 410792 102 + . . scaffold1785 TRF Tandem_Repeat 410997 411750 1018 + . . scaffold1785 WUBlastX LINE_L1-Tx1 415031 415420 27 + . . scaffold1785 TRF Tandem_Repeat 420486 421408 1254 + . . scaffold1785 TRF Tandem_Repeat 421410 421535 89 + . . scaffold1785 TRF Tandem_Repeat 421434 421531 99 + . . scaffold1785 GLEAN promoter 423204 424203 0.965908 + . ID=CGI_10024385; scaffold1785 GLEAN mRNA 424204 427017 0.965908 + . ID=CGI_10024385; scaffold1785 GLEAN mRNA 429132 491316 0.272926 - . ID=CGI_10024386; scaffold1785 TRF Tandem_Repeat 434331 435020 1335 + . . scaffold1785 TRF Tandem_Repeat 435868 436263 783 + . . scaffold1785 TRF Tandem_Repeat 439393 439630 134 + . . scaffold1785 TRF Tandem_Repeat 440510 440664 134 + . . scaffold1785 TRF Tandem_Repeat 465689 465738 100 + . . scaffold1785 GLEAN promoter 491317 492316 0.272926 - . ID=CGI_10024386; scaffold1785 TRF Tandem_Repeat 500041 500066 52 + . . scaffold1785 TRF Tandem_Repeat 502424 502465 84 + . . scaffold1785 WUBlastX LINE_RTE-X 503407 503922 43 + . . scaffold1785 WUBlastX LINE_RTE-X 503482 503919 82 + . . scaffold1785 GLEAN mRNA 505470 510851 0.99982 - . ID=CGI_10024387; scaffold1785 GLEAN promoter 510410 511409 0.999869 + . ID=CGI_10024388; scaffold1785 GLEAN promoter 510852 511851 0.99982 - . ID=CGI_10024387; scaffold1785 GLEAN mRNA 511410 512977 0.999869 + . ID=CGI_10024388; scaffold1785 GLEAN promoter 521476 522475 0.457905 + . ID=CGI_10024389; scaffold1785 GLEAN mRNA 522476 550245 0.457905 + . ID=CGI_10024389; scaffold1785 TRF Tandem_Repeat 532546 532583 76 + . . scaffold1785 TRF Tandem_Repeat 533532 533569 76 + . . scaffold1785 TRF Tandem_Repeat 544164 544209 92 + . . scaffold1785 WUBlastX LINE_CR1 544242 544388 64 + . . scaffold1785 WUBlastX LINE_CR1 544242 544427 62 + . . scaffold1785 WUBlastX LINE_CR1-L2 544420 544806 139 + . . scaffold1785 WUBlastX LINE_L2 544441 544878 99 + . . scaffold1785 WUBlastX LINE_CR1-L2 544486 544764 161 + . . scaffold1785 WUBlastX LINE_L2 544776 545027 37 + . . scaffold1785 WUBlastX LINE_L2 545035 545199 36 + . . scaffold1785 TRF Tandem_Repeat 547291 548189 835 + . . scaffold1785 GLEAN promoter 556360 557359 0.999377 + . ID=CGI_10024390; scaffold1785 GLEAN mRNA 557360 575515 0.999377 + . ID=CGI_10024390; scaffold1785 TRF Tandem_Repeat 578999 579868 1246 + . . scaffold1785 TRF Tandem_Repeat 580814 580960 73 + . . scaffold1785 TRF Tandem_Repeat 580876 581005 84 + . . scaffold1785 WUBlastX DNA_TcMar-Marin 600959 601735 104 + . . scaffold1785 WUBlastX DNA_TcMar-Tc1 601151 601762 224 + . . scaffold1785 TRF Tandem_Repeat 604399 604450 104 + . . scaffold1785 TRF Tandem_Repeat 622506 622560 92 + . . scaffold1785 WUBlastX LINE_L1-Tx1 622945 623277 146 + . . scaffold1785 WUBlastX DNA_TcMar-Tc1 623573 624568 140 + . . scaffold1785 WUBlastX LINE_L1-Tx1 625430 625978 191 + . . scaffold1785 WUBlastX LINE_L1-Tx1 625941 626132 72 + . . scaffold1785 WUBlastX LINE_L1-Tx1 626119 626547 92 + . . scaffold1785 WUBlastX LINE_L1-Tx1 626568 626798 65 + . . scaffold1785 WUBlastX LINE_L1 626607 626861 40 + . . scaffold1785 WUBlastX LINE_L1-Tx1 626727 626897 28 + . . scaffold1785 GLEAN mRNA 629152 649907 0.539712 - . ID=CGI_10024391; scaffold1785 TRF Tandem_Repeat 640757 640848 184 + . . scaffold1785 TRF Tandem_Repeat 643515 643618 79 + . . scaffold1785 WUBlastX LTR_Ngaro 647907 648212 24 + . . scaffold1785 WUBlastX LTR_Ngaro 648081 648188 32 + . . scaffold1785 WUBlastX LTR_Ngaro 648167 648370 82 + . . scaffold1785 WUBlastX LTR_Ngaro 648170 648412 24 + . . scaffold1785 WUBlastX LTR_Ngaro 648412 648558 26 + . . scaffold1785 WUBlastX LTR_Ngaro 648723 649376 62 + . . scaffold1785 GLEAN promoter 649908 650907 0.539712 - . ID=CGI_10024391; scaffold1785 GLEAN promoter 651485 652484 0.999624 + . ID=CGI_10024392; scaffold1785 GLEAN mRNA 652485 664874 0.999624 + . ID=CGI_10024392; scaffold1785 TRF Tandem_Repeat 662485 662531 94 + . . scaffold1785 GLEAN promoter 666297 667296 0.283097 + . ID=CGI_10024393; scaffold1785 GLEAN mRNA 667297 689838 0.283097 + . ID=CGI_10024393; scaffold1785 TRF Tandem_Repeat 669828 669888 122 + . . scaffold1785 TRF Tandem_Repeat 678468 678512 90 + . . scaffold1785 TRF Tandem_Repeat 704120 704877 963 + . . scaffold1785 WUBlastX DNA_Harbinger 705946 706095 71 - . . scaffold1785 WUBlastX LTR_DIRS 709328 709498 62 + . . scaffold1785 WUBlastX LTR_DIRS 709564 709782 116 + . . scaffold1785 WUBlastX LTR_DIRS 709791 710039 71 + . . scaffold1785 WUBlastX LTR_DIRS 710036 710263 42 + . . scaffold1785 WUBlastX LTR_DIRS 710974 711663 320 + . . scaffold1785 WUBlastX DNA_Sola 716190 716516 28 + . . scaffold1785 WUBlastX DNA_Sola 716418 716483 30 + . . scaffold1785 WUBlastX DNA_Sola 716893 718005 390 + . . scaffold1785 GLEAN promoter 720260 721259 0.713573 + . ID=CGI_10024394; scaffold1785 GLEAN mRNA 721260 721481 0.713573 + . ID=CGI_10024394; scaffold1785 TRF Tandem_Repeat 721976 722039 74 + . . scaffold1785 TRF Tandem_Repeat 726322 726371 84 + . . scaffold1785 TRF Tandem_Repeat 728031 728095 130 + . . scaffold1785 GLEAN promoter 730850 731849 0.817608 + . ID=CGI_10024395; scaffold1785 GLEAN mRNA 731850 735800 0.817608 + . ID=CGI_10024395; scaffold1785 TRF Tandem_Repeat 740302 740496 128 + . . scaffold1785 TRF Tandem_Repeat 740302 740496 184 + . . scaffold1785 TRF Tandem_Repeat 741013 741223 121 + . . scaffold1785 TRF Tandem_Repeat 741020 741219 179 + . . scaffold1785 GLEAN mRNA 748660 759708 1 - . ID=CGI_10024396; scaffold1785 TRF Tandem_Repeat 750684 750786 147 + . . scaffold1785 TRF Tandem_Repeat 752782 752820 78 + . . scaffold1785 TRF Tandem_Repeat 756457 756509 99 + . . scaffold1785 GLEAN promoter 759709 760708 1 - . ID=CGI_10024396; scaffold1785 GLEAN promoter 761898 762897 1 + . ID=CGI_10024397; scaffold1785 GLEAN mRNA 762898 770631 1 + . ID=CGI_10024397; scaffold1785 TRF Tandem_Repeat 766372 766397 52 + . . scaffold1785 TRF Tandem_Repeat 767853 767887 70 + . . scaffold1785 TRF Tandem_Repeat 768218 768250 66 + . . scaffold1785 GLEAN mRNA 774584 781577 0.6802 - . ID=CGI_10024398; scaffold1785 TRF Tandem_Repeat 778299 779113 785 + . . scaffold1785 GLEAN promoter 781578 782577 0.6802 - . ID=CGI_10024398; scaffold1785 TRF Tandem_Repeat 782919 782963 90 + . . scaffold1785 GLEAN mRNA 783585 789939 0.272029 - . ID=CGI_10024399; scaffold1785 GLEAN promoter 789940 790939 0.272029 - . ID=CGI_10024399; scaffold1785 TRF Tandem_Repeat 791676 792284 985 + . . scaffold1785 GLEAN mRNA 794120 828410 0.994591 - . ID=CGI_10024400; scaffold1785 TRF Tandem_Repeat 800262 800356 84 + . . scaffold1785 TRF Tandem_Repeat 804424 804511 59 + . . scaffold1785 TRF Tandem_Repeat 804425 804503 86 + . . scaffold1785 TRF Tandem_Repeat 804425 804499 96 + . . scaffold1785 TRF Tandem_Repeat 805683 806130 671 + . . scaffold1785 TRF Tandem_Repeat 811284 811330 94 + . . scaffold1785 TRF Tandem_Repeat 821116 821158 86 + . . scaffold1785 TRF Tandem_Repeat 823530 823629 173 + . . scaffold1785 TRF Tandem_Repeat 824605 824895 275 + . . scaffold1785 TRF Tandem_Repeat 824605 824943 269 + . . scaffold1785 GLEAN promoter 828411 829410 0.994591 - . ID=CGI_10024400; scaffold1785 GLEAN mRNA 838180 855518 0.197068 - . ID=CGI_10024401; scaffold1785 WUBlastX LINE_L1 843055 843504 40 + . . scaffold1785 WUBlastX LINE_L1-Tx1 843163 843819 191 + . . scaffold1785 WUBlastX LINE_L1-Tx1 843815 844516 131 + . . scaffold1785 TRF Tandem_Repeat 848686 848739 99 + . . scaffold1785 TRF Tandem_Repeat 851024 851113 155 + . . scaffold1785 TRF Tandem_Repeat 854189 854220 55 + . . scaffold1785 TRF Tandem_Repeat 854530 854567 51 + . . scaffold1785 GLEAN promoter 855519 856518 0.197068 - . ID=CGI_10024401; scaffold1785 TRF Tandem_Repeat 857620 857685 132 + . . scaffold1785 GLEAN mRNA 871418 880500 0.999998 - . ID=CGI_10024402; scaffold1785 GLEAN promoter 880501 881500 0.999998 - . ID=CGI_10024402; scaffold1785 GLEAN promoter 882047 883046 1 + . ID=CGI_10024403; scaffold1785 GLEAN mRNA 883047 883316 1 + . ID=CGI_10024403; scaffold1785 GLEAN promoter 883302 884301 0.999981 + . ID=CGI_10024404; scaffold1785 GLEAN mRNA 884302 884777 0.999981 + . ID=CGI_10024404; scaffold1785 TRF Tandem_Repeat 891308 891398 182 + . . scaffold1785 GLEAN promoter 897064 898063 0.654733 + . ID=CGI_10024405; scaffold1785 GLEAN mRNA 898064 904199 0.654733 + . ID=CGI_10024405; scaffold1785 WUBlastX DNA_Harbinger 907857 908663 586 + . . scaffold1785 WUBlastX DNA_Harbinger 908659 908856 43 + . . scaffold1785 GLEAN mRNA 909020 927662 0.54223 - . ID=CGI_10024406; scaffold1785 WUBlastX DNA_Harbinger 909599 909844 125 - . . scaffold1785 TRF Tandem_Repeat 909983 910016 68 + . . scaffold1785 TRF Tandem_Repeat 911957 912028 90 + . . scaffold1785 TRF Tandem_Repeat 918475 918522 96 + . . scaffold1785 WUBlastX DNA_hAT-Ac 927475 927816 75 - . . scaffold1785 WUBlastX DNA_hAT-Ac 927511 927960 67 - . . scaffold1785 GLEAN promoter 927663 928662 0.54223 - . ID=CGI_10024406; scaffold1785 WUBlastX LTR_Gypsy 929555 930223 555 + . . scaffold1785 GLEAN promoter 935380 936379 0.593391 + . ID=CGI_10024407; scaffold1785 GLEAN mRNA 936380 939479 0.593391 + . ID=CGI_10024407; scaffold1786 TRF Tandem_Repeat 1917 1953 56 + . . scaffold1786 GLEAN promoter 5672 6671 1 + . ID=CGI_10008577; scaffold1786 GLEAN mRNA 6672 12098 1 + . ID=CGI_10008577; scaffold1786 GLEAN promoter 13457 14456 0.999414 + . ID=CGI_10008578; scaffold1786 GLEAN mRNA 14457 17895 0.999414 + . ID=CGI_10008578; scaffold1786 TRF Tandem_Repeat 28124 28162 51 + . . scaffold1786 TRF Tandem_Repeat 28124 28180 60 + . . scaffold1786 TRF Tandem_Repeat 28148 28180 57 + . . scaffold1786 TRF Tandem_Repeat 35815 36089 169 + . . scaffold1786 TRF Tandem_Repeat 36896 36922 54 + . . scaffold1786 TRF Tandem_Repeat 44856 45150 411 + . . scaffold1786 TRF Tandem_Repeat 48427 48483 114 + . . scaffold1786 TRF Tandem_Repeat 48796 48849 99 + . . scaffold1786 WUBlastX LINE_RTE-X 50880 51110 30 - . . scaffold1786 WUBlastX LINE_RTE-X 50931 51044 39 - . . scaffold1786 WUBlastX LINE_RTE-X 51154 51837 180 - . . scaffold1786 WUBlastX LINE_RTE-X 51322 52731 337 - . . scaffold1786 WUBlastX LINE_RTE-X 52303 52812 185 - . . scaffold1786 WUBlastX LINE_RTE-BovB 56004 56339 38 - . . scaffold1786 WUBlastX LINE_RTE-BovB 56154 56339 44 - . . scaffold1786 WUBlastX LINE_RTE-BovB 56196 56411 96 - . . scaffold1786 WUBlastX LINE_RTE-BovB 56411 56479 26 - . . scaffold1786 WUBlastX LINE_RTE-BovB 56479 57123 440 - . . scaffold1786 WUBlastX LINE_RTE-BovB 57128 57163 26 - . . scaffold1786 WUBlastX LINE_RTE-BovB 57138 57803 360 - . . scaffold1786 WUBlastX LINE_RTE-X 57660 57833 21 - . . scaffold1786 TRF Tandem_Repeat 64812 64933 86 + . . scaffold1786 TRF Tandem_Repeat 64969 65068 191 + . . scaffold1786 WUBlastX LTR_Gypsy 65793 65885 42 + . . scaffold1786 WUBlastX LTR_Gypsy 65863 66210 157 + . . scaffold1786 WUBlastX LTR_Gypsy 66236 66541 65 + . . scaffold1786 WUBlastX LTR_Gypsy 66263 66517 95 + . . scaffold1786 WUBlastX LTR_Gypsy 66544 66648 40 + . . scaffold1786 WUBlastX LTR_Gypsy 66642 67769 831 + . . scaffold1786 TRF Tandem_Repeat 67794 67860 80 + . . scaffold1786 TRF Tandem_Repeat 70619 70659 50 + . . scaffold1786 TRF Tandem_Repeat 70657 70694 58 + . . scaffold1786 TRF Tandem_Repeat 71203 71269 80 + . . scaffold1786 WUBlastX LTR_Gypsy 71300 71581 114 + . . scaffold1786 WUBlastX LTR_Gypsy 71366 72145 203 + . . scaffold1786 WUBlastX LTR_Gypsy 71885 72379 251 + . . scaffold1786 WUBlastX LTR_Gypsy 72270 72791 142 + . . scaffold1786 WUBlastX LTR_Gypsy 72270 72887 85 + . . scaffold1786 TRF Tandem_Repeat 73712 73755 88 + . . scaffold1786 TRF Tandem_Repeat 81237 81953 481 + . . scaffold1786 TRF Tandem_Repeat 82038 82540 681 + . . scaffold1786 TRF Tandem_Repeat 82539 83381 552 + . . scaffold1786 TRF Tandem_Repeat 82854 83467 339 + . . scaffold1786 TRF Tandem_Repeat 88640 88691 104 + . . scaffold1786 TRF Tandem_Repeat 88691 88726 72 + . . scaffold1786 GLEAN mRNA 89657 92279 0.999676 - . ID=CGI_10008579; scaffold1786 GLEAN promoter 92280 93279 0.999676 - . ID=CGI_10008579; scaffold1786 TRF Tandem_Repeat 93542 93567 52 + . . scaffold1786 TRF Tandem_Repeat 105157 105193 74 + . . scaffold1786 GLEAN mRNA 140074 147938 0.999676 - . ID=CGI_10008580; scaffold1786 TRF Tandem_Repeat 145154 145196 77 + . . scaffold1786 GLEAN promoter 147939 148938 0.999676 - . ID=CGI_10008580; scaffold1786 TRF Tandem_Repeat 154441 154479 78 + . . scaffold1786 TRF Tandem_Repeat 170437 170496 76 + . . scaffold1786 TRF Tandem_Repeat 177222 177270 98 + . . scaffold1786 TRF Tandem_Repeat 178054 178099 92 + . . scaffold1786 TRF Tandem_Repeat 178329 178371 86 + . . scaffold1786 TRF Tandem_Repeat 184928 185211 111 + . . scaffold1786 TRF Tandem_Repeat 184934 185250 165 + . . scaffold1786 TRF Tandem_Repeat 184971 185073 71 + . . scaffold1786 TRF Tandem_Repeat 185113 185439 154 + . . scaffold1786 TRF Tandem_Repeat 185114 185250 93 + . . scaffold1786 TRF Tandem_Repeat 185134 185429 179 + . . scaffold1786 TRF Tandem_Repeat 185168 185434 136 + . . scaffold1786 GLEAN promoter 200620 201619 0.639916 + . ID=CGI_10008581; scaffold1786 GLEAN mRNA 201620 208641 0.639916 + . ID=CGI_10008581; scaffold1787 TRF Tandem_Repeat 2919 3427 260 + . . scaffold1787 WUBlastX LTR_Gypsy 8474 10396 1257 - . . scaffold1787 WUBlastX LTR_Gypsy 10243 10755 560 - . . scaffold1787 TRF Tandem_Repeat 13813 14371 469 + . . scaffold1787 TRF Tandem_Repeat 13871 14471 541 + . . scaffold1787 TRF Tandem_Repeat 19486 19705 251 + . . scaffold1787 TRF Tandem_Repeat 19486 20042 627 + . . scaffold1787 TRF Tandem_Repeat 19492 20040 419 + . . scaffold1787 TRF Tandem_Repeat 19718 20042 449 + . . scaffold1787 TRF Tandem_Repeat 23232 23886 629 + . . scaffold1787 GLEAN mRNA 26160 28701 1 - . ID=CGI_10001663; scaffold1787 GLEAN promoter 28702 29037 1 - . ID=CGI_10001663; scaffold1788 GLEAN promoter 232 1231 0.618655 + . ID=CGI_10019910; scaffold1788 GLEAN mRNA 1232 23874 0.618655 + . ID=CGI_10019910; scaffold1788 WUBlastX DNA_hAT-Tip100 6293 7417 492 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 6482 8131 265 + . . scaffold1788 WUBlastX LINE_Rex-Babar 17721 17987 49 + . . scaffold1788 WUBlastX LINE_CR1-L2 17784 18011 84 + . . scaffold1788 WUBlastX LINE_CR1-L2 17847 18014 89 + . . scaffold1788 WUBlastX LINE_CR1-L2 17987 18955 606 + . . scaffold1788 WUBlastX LINE_L2 17987 19150 308 + . . scaffold1788 WUBlastX LINE_CR1-L2 18907 19641 214 + . . scaffold1788 TRF Tandem_Repeat 25425 25460 72 + . . scaffold1788 TRF Tandem_Repeat 28234 28291 116 + . . scaffold1788 TRF Tandem_Repeat 28772 28822 102 + . . scaffold1788 WUBlastX DNA_Maverick 29688 30473 35 + . . scaffold1788 WUBlastX DNA_Maverick 29919 30572 122 + . . scaffold1788 WUBlastX DNA_Maverick 29982 30470 123 + . . scaffold1788 WUBlastX DNA_Maverick 30525 30680 26 + . . scaffold1788 WUBlastX DNA_Maverick 31077 32060 289 + . . scaffold1788 WUBlastX DNA_Maverick 31491 32192 384 + . . scaffold1788 WUBlastX DNA_Maverick 32118 32231 51 + . . scaffold1788 WUBlastX DNA_Maverick 32355 33506 586 + . . scaffold1788 WUBlastX DNA_Maverick 33456 33524 29 + . . scaffold1788 WUBlastX DNA_Maverick 33533 33712 86 + . . scaffold1788 WUBlastX LINE_L1-Tx1 33712 34404 163 + . . scaffold1788 WUBlastX LINE_L1-Tx1 34409 34657 31 + . . scaffold1788 WUBlastX LINE_L1-Tx1 34671 35012 52 + . . scaffold1788 WUBlastX DNA_Maverick 35206 35658 137 + . . scaffold1788 WUBlastX DNA_Maverick 36051 36398 42 - . . scaffold1788 WUBlastX DNA_Maverick 36813 37028 145 - . . scaffold1788 WUBlastX DNA_Maverick 37036 37434 199 - . . scaffold1788 WUBlastX DNA_Maverick 37698 38006 91 - . . scaffold1788 WUBlastX DNA_Maverick 37761 38063 128 - . . scaffold1788 WUBlastX DNA_Maverick 38078 39319 516 - . . scaffold1788 GLEAN mRNA 39364 39744 0.999064 - . ID=CGI_10019911; scaffold1788 GLEAN promoter 39745 40744 0.999064 - . ID=CGI_10019911; scaffold1788 WUBlastX LTR_Copia 39789 39905 21 - . . scaffold1788 WUBlastX DNA_Maverick 39819 40052 63 - . . scaffold1788 WUBlastX DNA_Maverick 40283 40366 31 - . . scaffold1788 WUBlastX DNA_Maverick 40329 40583 132 - . . scaffold1788 WUBlastX DNA_Maverick 40516 41316 192 - . . scaffold1788 WUBlastX DNA_Maverick 40639 41328 254 - . . scaffold1788 GLEAN mRNA 41760 42164 0.59015 - . ID=CGI_10019912; scaffold1788 GLEAN promoter 42165 43164 0.59015 - . ID=CGI_10019912; scaffold1788 GLEAN mRNA 42231 71327 0.656466 - . ID=CGI_10019913; scaffold1788 WUBlastX RC_Helitron 45566 45715 102 - . . scaffold1788 WUBlastX RC_Helitron 45572 45745 50 - . . scaffold1788 WUBlastX RC_Helitron 45691 45933 30 - . . scaffold1788 WUBlastX RC_Helitron 45790 45939 68 - . . scaffold1788 WUBlastX DNA_Helitron 46187 46294 22 - . . scaffold1788 WUBlastX RC_Helitron 46211 46294 25 - . . scaffold1788 WUBlastX LINE_L1 47120 47644 162 + . . scaffold1788 WUBlastX LINE_L1-Tx1 47210 47650 360 + . . scaffold1788 WUBlastX LINE_L1-Tx1 47228 47767 266 + . . scaffold1788 TRF Tandem_Repeat 49380 50501 1449 + . . scaffold1788 WUBlastX LINE_L1-Tx1 50580 50867 88 + . . scaffold1788 WUBlastX LINE_L1-Tx1 50595 50819 95 + . . scaffold1788 WUBlastX LINE_L1-Tx1 50855 51742 259 + . . scaffold1788 WUBlastX LINE_L1-Tx1 51760 52389 25 + . . scaffold1788 WUBlastX LINE_L1-Tx1 51763 52188 104 + . . scaffold1788 WUBlastX LINE_L1-Tx1 51772 52269 88 + . . scaffold1788 WUBlastX DNA_Maverick 53229 53552 60 - . . scaffold1788 WUBlastX DNA_Maverick 56746 57120 208 - . . scaffold1788 WUBlastX DNA_Maverick 57132 57293 115 - . . scaffold1788 WUBlastX DNA_Maverick 57161 57691 134 - . . scaffold1788 WUBlastX DNA_Maverick 57248 57763 219 - . . scaffold1788 WUBlastX DNA_Maverick 57825 57983 30 - . . scaffold1788 WUBlastX DNA_Maverick 57825 57941 37 - . . scaffold1788 WUBlastX DNA_IS4EU 64040 64144 55 + . . scaffold1788 WUBlastX DNA_IS4EU 64680 64763 23 + . . scaffold1788 WUBlastX DNA_Kolobok-IS4 65013 65135 40 + . . scaffold1788 WUBlastX DNA_IS4EU 65034 65135 63 + . . scaffold1788 WUBlastX DNA_Kolobok-IS4 65321 66073 312 - . . scaffold1788 GLEAN promoter 71328 72327 0.656466 - . ID=CGI_10019913; scaffold1788 TRF Tandem_Repeat 71736 71777 84 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 77626 77973 87 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 77680 78042 121 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 77973 78131 141 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 78119 79339 570 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 80042 80362 29 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 80099 80356 37 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 80141 80371 173 + . . scaffold1788 WUBlastX DNA_hAT-Tip100 80159 80467 46 + . . scaffold1788 WUBlastX LINE_RTE-X 98053 98370 60 + . . scaffold1788 WUBlastX LINE_RTE-X 98176 98319 86 + . . scaffold1788 WUBlastX LINE_RTE-X 98176 98370 79 + . . scaffold1788 WUBlastX LINE_RTE-X 98364 98717 94 + . . scaffold1788 TRF Tandem_Repeat 123311 123356 74 + . . scaffold1788 GLEAN promoter 124795 125794 1 + . ID=CGI_10019914; scaffold1788 TRF Tandem_Repeat 125256 125295 80 + . . scaffold1788 GLEAN mRNA 125795 131450 1 + . ID=CGI_10019914; scaffold1788 GLEAN mRNA 132540 133055 0.734542 - . ID=CGI_10019915; scaffold1788 GLEAN promoter 133056 134055 0.734542 - . ID=CGI_10019915; scaffold1788 GLEAN mRNA 135539 137642 0.999376 - . ID=CGI_10019916; scaffold1788 GLEAN promoter 137274 138273 0.834492 + . ID=CGI_10019917; scaffold1788 GLEAN promoter 137643 138642 0.999376 - . ID=CGI_10019916; scaffold1788 GLEAN mRNA 138274 148114 0.834492 + . ID=CGI_10019917; scaffold1788 TRF Tandem_Repeat 145358 146269 1565 + . . scaffold1788 GLEAN mRNA 151336 155570 1 - . ID=CGI_10019918; scaffold1788 GLEAN promoter 155571 156570 1 - . ID=CGI_10019918; scaffold1788 GLEAN mRNA 162864 170700 1 - . ID=CGI_10019919; scaffold1788 TRF Tandem_Repeat 166496 166565 68 + . . scaffold1788 TRF Tandem_Repeat 168305 168647 614 + . . scaffold1788 GLEAN promoter 170701 171700 1 - . ID=CGI_10019919; scaffold1788 GLEAN mRNA 176266 189425 1 - . ID=CGI_10019920; scaffold1788 TRF Tandem_Repeat 176519 176552 68 + . . scaffold1788 GLEAN promoter 189426 190425 1 - . ID=CGI_10019920; scaffold1788 GLEAN promoter 199768 200767 0.885693 + . ID=CGI_10019921; scaffold1788 GLEAN mRNA 200768 269132 0.885693 + . ID=CGI_10019921; scaffold1788 TRF Tandem_Repeat 223946 223998 106 + . . scaffold1788 TRF Tandem_Repeat 224275 224318 88 + . . scaffold1788 TRF Tandem_Repeat 230802 230849 96 + . . scaffold1788 TRF Tandem_Repeat 250126 250160 70 + . . scaffold1788 TRF Tandem_Repeat 261960 262199 165 + . . scaffold1788 TRF Tandem_Repeat 261960 262144 203 + . . scaffold1788 GLEAN mRNA 282995 305782 1 - . ID=CGI_10019922; scaffold1788 TRF Tandem_Repeat 297912 298008 185 + . . scaffold1788 GLEAN promoter 305783 306782 1 - . ID=CGI_10019922; scaffold1788 WUBlastX DNA_TcMar-Tc2 323609 323764 43 + . . scaffold1788 WUBlastX DNA_TcMar-Tc2 323636 324124 28 + . . scaffold1788 WUBlastX DNA_TcMar-Tc2 323636 323833 38 + . . scaffold1788 WUBlastX DNA_TcMar-Pogo 324012 324458 29 + . . scaffold1788 WUBlastX DNA_TcMar-Tc2 324123 324410 108 + . . scaffold1788 WUBlastX DNA_TcMar-Fot1 324276 324443 38 + . . scaffold1788 WUBlastX DNA_TcMar-Fot1 324519 324779 51 + . . scaffold1788 WUBlastX DNA_TcMar-Tc2 324570 324959 108 + . . scaffold1788 GLEAN mRNA 325470 333081 0.999999 - . ID=CGI_10019923; scaffold1788 TRF Tandem_Repeat 331946 332004 111 + . . scaffold1788 GLEAN promoter 333082 334081 0.999999 - . ID=CGI_10019923; scaffold1788 GLEAN mRNA 336270 355013 0.999521 - . ID=CGI_10019924; scaffold1788 TRF Tandem_Repeat 336436 336475 71 + . . scaffold1788 TRF Tandem_Repeat 340745 341499 1151 + . . scaffold1788 GLEAN promoter 355014 356013 0.999521 - . ID=CGI_10019924; scaffold1788 WUBlastX LTR_DIRS? 360911 361039 48 + . . scaffold1788 TRF Tandem_Repeat 364706 364812 137 + . . scaffold1788 GLEAN mRNA 367110 372782 0.999415 - . ID=CGI_10019925; scaffold1788 TRF Tandem_Repeat 369127 369173 94 + . . scaffold1788 GLEAN promoter 372783 373782 0.999415 - . ID=CGI_10019925; scaffold1788 TRF Tandem_Repeat 374683 375125 769 + . . scaffold1788 GLEAN promoter 389967 390966 1 + . ID=CGI_10019926; scaffold1788 GLEAN mRNA 390967 393423 1 + . ID=CGI_10019926; scaffold1788 TRF Tandem_Repeat 393675 393728 67 + . . scaffold1788 TRF Tandem_Repeat 393680 393722 52 + . . scaffold1788 WUBlastX LINE_L2 395268 395543 115 + . . scaffold1788 GLEAN promoter 395613 396612 0.999999 + . ID=CGI_10019927; scaffold1788 WUBlastX LINE_L2 395806 397344 1019 + . . scaffold1788 GLEAN mRNA 396613 397392 0.999999 + . ID=CGI_10019927; scaffold1788 WUBlastX LINE_L2 397953 398081 32 + . . scaffold1788 WUBlastX LINE_L2 397986 398429 135 + . . scaffold1788 TRF Tandem_Repeat 402661 402687 54 + . . scaffold1788 GLEAN mRNA 403411 404109 0.999661 - . ID=CGI_10019928; scaffold1788 GLEAN promoter 404110 405109 0.999661 - . ID=CGI_10019928; scaffold1788 TRF Tandem_Repeat 404769 404795 54 + . . scaffold1788 TRF Tandem_Repeat 405716 405764 98 + . . scaffold1788 GLEAN promoter 406702 407701 0.999999 + . ID=CGI_10019929; scaffold1788 GLEAN mRNA 407702 416433 0.999999 + . ID=CGI_10019929; scaffold1788 GLEAN mRNA 418086 419454 0.989212 - . ID=CGI_10019930; scaffold1788 GLEAN promoter 419455 420454 0.989212 - . ID=CGI_10019930; scaffold1788 GLEAN promoter 419630 420629 0.819834 + . ID=CGI_10019931; scaffold1788 GLEAN mRNA 420630 426027 0.819834 + . ID=CGI_10019931; scaffold1788 GLEAN mRNA 429837 443487 0.99912 - . ID=CGI_10019932; scaffold1788 TRF Tandem_Repeat 431235 431349 169 + . . scaffold1788 TRF Tandem_Repeat 434081 434701 872 + . . scaffold1788 TRF Tandem_Repeat 434081 434701 917 + . . scaffold1788 TRF Tandem_Repeat 436944 436977 68 + . . scaffold1788 GLEAN promoter 443488 444487 0.99912 - . ID=CGI_10019932; scaffold1788 TRF Tandem_Repeat 446339 446374 72 + . . scaffold1788 GLEAN mRNA 449639 469866 0.999598 - . ID=CGI_10019933; scaffold1788 TRF Tandem_Repeat 450665 450813 97 + . . scaffold1788 TRF Tandem_Repeat 450729 450875 73 + . . scaffold1788 TRF Tandem_Repeat 451820 452613 734 + . . scaffold1788 TRF Tandem_Repeat 459934 459972 78 + . . scaffold1788 GLEAN promoter 469867 470866 0.999598 - . ID=CGI_10019933; scaffold1788 TRF Tandem_Repeat 470360 470416 114 + . . scaffold1788 TRF Tandem_Repeat 471177 471231 110 + . . scaffold1788 TRF Tandem_Repeat 479622 479646 50 + . . scaffold1788 GLEAN promoter 490493 491492 0.99883 + . ID=CGI_10019934; scaffold1788 GLEAN mRNA 491493 510949 0.99883 + . ID=CGI_10019934; scaffold1788 TRF Tandem_Repeat 504434 504502 65 + . . scaffold1788 GLEAN promoter 512379 513378 0.499838 + . ID=CGI_10019935; scaffold1788 GLEAN mRNA 513379 519606 0.499838 + . ID=CGI_10019935; scaffold1788 GLEAN promoter 518970 519969 1 + . ID=CGI_10019936; scaffold1788 GLEAN mRNA 519970 522683 1 + . ID=CGI_10019936; scaffold1788 TRF Tandem_Repeat 525363 525565 192 + . . scaffold1788 GLEAN promoter 526756 527755 0.843601 + . ID=CGI_10019937; scaffold1788 GLEAN mRNA 527756 535840 0.843601 + . ID=CGI_10019937; scaffold1788 GLEAN promoter 534899 535898 0.843601 + . ID=CGI_10019938; scaffold1788 GLEAN mRNA 535899 539239 0.843601 + . ID=CGI_10019938; scaffold1788 GLEAN mRNA 539885 555345 0.999027 - . ID=CGI_10019939; scaffold1788 TRF Tandem_Repeat 541465 542375 1294 + . . scaffold1788 GLEAN promoter 555346 556345 0.999027 - . ID=CGI_10019939; scaffold1788 TRF Tandem_Repeat 557353 557420 136 + . . scaffold1788 TRF Tandem_Repeat 563375 563621 415 + . . scaffold1788 TRF Tandem_Repeat 565576 565849 203 + . . scaffold1788 TRF Tandem_Repeat 565576 565985 142 + . . scaffold1788 TRF Tandem_Repeat 565616 565985 189 + . . scaffold1788 TRF Tandem_Repeat 566599 567021 440 + . . scaffold1788 TRF Tandem_Repeat 566694 567085 220 + . . scaffold1788 TRF Tandem_Repeat 567006 567249 136 + . . scaffold1788 TRF Tandem_Repeat 573620 573666 94 + . . scaffold1788 GLEAN promoter 576778 577777 0.651135 + . ID=CGI_10019940; scaffold1788 GLEAN mRNA 577778 581808 0.651135 + . ID=CGI_10019940; scaffold1788 GLEAN promoter 584785 585784 0.975766 + . ID=CGI_10019941; scaffold1788 GLEAN mRNA 585785 601075 0.975766 + . ID=CGI_10019941; scaffold1788 TRF Tandem_Repeat 595745 595774 51 + . . scaffold1788 WUBlastX LINE_R2-Hero 600782 601990 125 + . . scaffold1788 WUBlastX LINE_R2-Hero 600992 602089 192 + . . scaffold1788 WUBlastX LINE_R2-Hero 602084 602785 350 + . . scaffold1788 WUBlastX LINE_R2-Hero 602411 603031 103 + . . scaffold1788 WUBlastX LINE_R2-Hero 602894 603028 104 + . . scaffold1788 WUBlastX LINE_R2-Hero 603024 603278 97 + . . scaffold1788 TRF Tandem_Repeat 616268 616340 110 + . . scaffold1789 TRF Tandem_Repeat 1919 2017 76 + . . scaffold1789 TRF Tandem_Repeat 3616 3726 71 + . . scaffold1789 TRF Tandem_Repeat 8434 8557 92 + . . scaffold1789 GLEAN promoter 9291 10290 0.974284 + . ID=CGI_10003175; scaffold1789 GLEAN mRNA 10291 23583 0.974284 + . ID=CGI_10003175; scaffold1789 TRF Tandem_Repeat 10597 10654 59 + . . scaffold1789 TRF Tandem_Repeat 10612 10654 50 + . . scaffold1789 TRF Tandem_Repeat 14867 14906 80 + . . scaffold1789 WUBlastX DNA_Kolobok 15280 15531 43 + . . scaffold1789 WUBlastX DNA_Kolobok 15566 15820 92 + . . scaffold1789 WUBlastX DNA_Kolobok 16837 17133 82 + . . scaffold1789 WUBlastX DNA_Kolobok 17573 17899 93 - . . scaffold1789 TRF Tandem_Repeat 20668 20709 52 + . . scaffold1789 GLEAN mRNA 24055 30627 0.651132 - . ID=CGI_10003176; scaffold1789 WUBlastX DNA_TcMar-Tc1 26067 26219 69 - . . scaffold1789 WUBlastX DNA_TcMar-Tc1 26218 26283 56 - . . scaffold1789 WUBlastX DNA_TcMar-Tc1 26240 26605 61 - . . scaffold1789 WUBlastX DNA_TcMar-Tc1 26345 26623 73 - . . scaffold1789 TRF Tandem_Repeat 27632 27676 90 + . . scaffold1789 TRF Tandem_Repeat 28483 28516 50 + . . scaffold1789 TRF Tandem_Repeat 28833 28957 189 + . . scaffold1789 GLEAN promoter 30628 31627 0.651132 - . ID=CGI_10003176; scaffold1789 WUBlastX LINE_L2 34358 34504 76 - . . scaffold1789 WUBlastX LINE_L2 34498 35178 220 - . . scaffold1789 WUBlastX LINE_L2 35177 35263 28 - . . scaffold1789 GLEAN promoter 36844 37843 0.351497 + . ID=CGI_10003177; scaffold1789 GLEAN mRNA 37844 51787 0.351497 + . ID=CGI_10003177; scaffold1789 TRF Tandem_Repeat 42110 42165 94 + . . scaffold1789 TRF Tandem_Repeat 50716 50785 72 + . . scaffold1789 GLEAN mRNA 55811 62069 0.47337 - . ID=CGI_10003178; scaffold1789 TRF Tandem_Repeat 58243 58291 98 + . . scaffold1789 TRF Tandem_Repeat 59511 59553 86 + . . scaffold1789 GLEAN promoter 62070 63069 0.47337 - . ID=CGI_10003178; scaffold1789 WUBlastX LINE_L2 62995 63150 27 - . . scaffold1789 WUBlastX LINE_L2 63037 63150 57 - . . scaffold1789 WUBlastX LINE_L2 63087 63455 27 - . . scaffold1789 WUBlastX LINE_L2 63222 63416 108 - . . scaffold1789 WUBlastX LINE_L2 63252 63602 62 - . . scaffold1789 TRF Tandem_Repeat 65356 65429 121 + . . scaffold179 GLEAN mRNA 8396 13890 0.486025 - . ID=CGI_10007036; scaffold179 GLEAN promoter 13891 14890 0.486025 - . ID=CGI_10007036; scaffold179 GLEAN promoter 24023 25022 1 + . ID=CGI_10007037; scaffold179 GLEAN mRNA 25023 26515 1 + . ID=CGI_10007037; scaffold179 GLEAN mRNA 56229 61250 1 - . ID=CGI_10007038; scaffold179 GLEAN promoter 61251 62250 1 - . ID=CGI_10007038; scaffold179 GLEAN mRNA 76100 89079 0.999676 - . ID=CGI_10007039; scaffold179 GLEAN promoter 89080 90079 0.999676 - . ID=CGI_10007039; scaffold179 GLEAN promoter 94487 95486 0.988957 + . ID=CGI_10007040; scaffold179 GLEAN mRNA 95487 97037 0.988957 + . ID=CGI_10007040; scaffold179 GLEAN promoter 114255 115254 1 + . ID=CGI_10007041; scaffold179 GLEAN mRNA 115255 127961 1 + . ID=CGI_10007041; scaffold179 GLEAN mRNA 131018 134406 0.999997 - . ID=CGI_10007042; scaffold179 GLEAN promoter 134407 135406 0.999997 - . ID=CGI_10007042; scaffold179 GLEAN mRNA 141495 158518 0.637629 - . ID=CGI_10007043; scaffold179 GLEAN promoter 150148 151147 0.999949 + . ID=CGI_10007044; scaffold179 GLEAN mRNA 151148 160453 0.999949 + . ID=CGI_10007044; scaffold179 GLEAN promoter 158519 159518 0.637629 - . ID=CGI_10007043; scaffold1790 GLEAN mRNA 955 6143 0.999899 - . ID=CGI_10001530; scaffold1790 GLEAN promoter 6144 7143 0.999899 - . ID=CGI_10001530; scaffold1790 GLEAN mRNA 6802 14901 0.999899 - . ID=CGI_10001531; scaffold1790 GLEAN promoter 14902 15901 0.999899 - . ID=CGI_10001531; scaffold1790 GLEAN promoter 16208 17207 1 + . ID=CGI_10001532; scaffold1790 GLEAN mRNA 17208 24913 1 + . ID=CGI_10001532; scaffold1791 WUBlastX DNA_Harbinger 291 644 139 - . . scaffold1791 TRF Tandem_Repeat 1404 1451 96 + . . scaffold1791 TRF Tandem_Repeat 2047 2074 56 + . . scaffold1791 WUBlastX LINE_RTE-X 2240 2797 67 - . . scaffold1791 WUBlastX LINE_RTE-X 2399 2779 89 - . . scaffold1791 TRF Tandem_Repeat 6651 6686 72 + . . scaffold1791 GLEAN promoter 8659 9658 0.999676 + . ID=CGI_10007864; scaffold1791 GLEAN mRNA 9659 15490 0.999676 + . ID=CGI_10007864; scaffold1791 TRF Tandem_Repeat 19136 19194 77 + . . scaffold1791 GLEAN promoter 19149 20148 0.405413 + . ID=CGI_10007865; scaffold1791 GLEAN mRNA 20149 36062 0.405413 + . ID=CGI_10007865; scaffold1791 TRF Tandem_Repeat 28373 28434 115 + . . scaffold1791 TRF Tandem_Repeat 33419 33595 156 + . . scaffold1791 TRF Tandem_Repeat 34008 34278 233 + . . scaffold1791 TRF Tandem_Repeat 34009 34279 116 + . . scaffold1791 TRF Tandem_Repeat 34060 34169 104 + . . scaffold1791 WUBlastX LINE_RTE-BovB 37896 38186 58 - . . scaffold1791 WUBlastX LINE_RTE-BovB 37953 38195 190 - . . scaffold1791 WUBlastX LINE_Rex-Babar 43537 43563 20 + . . scaffold1791 WUBlastX LINE_L2 44055 45140 109 + . . scaffold1791 WUBlastX LINE_RTE-X 44274 45257 432 + . . scaffold1791 WUBlastX LINE_RTE-X 45371 45871 113 + . . scaffold1791 WUBlastX LINE_RTE-X 48185 48259 30 - . . scaffold1791 WUBlastX LINE_RTE-X 48271 48405 22 - . . scaffold1791 WUBlastX DNA_Kolobok-IS4 56623 57111 83 - . . scaffold1791 WUBlastX DNA_IS4EU 56623 57018 89 - . . scaffold1791 GLEAN promoter 65923 66922 0.835531 + . ID=CGI_10007866; scaffold1791 GLEAN mRNA 66923 91200 0.835531 + . ID=CGI_10007866; scaffold1791 WUBlastX LINE_L1 67577 67939 32 + . . scaffold1791 GLEAN mRNA 75116 82811 0.960354 - . ID=CGI_10007867; scaffold1791 GLEAN promoter 82812 83811 0.960354 - . ID=CGI_10007867; scaffold1791 GLEAN mRNA 83527 103062 0.896369 - . ID=CGI_10007868; scaffold1791 TRF Tandem_Repeat 91662 91764 161 + . . scaffold1791 TRF Tandem_Repeat 91662 91764 161 + . . scaffold1791 TRF Tandem_Repeat 91662 91764 161 + . . scaffold1791 TRF Tandem_Repeat 93524 93560 74 + . . scaffold1791 WUBlastX LTR_Ngaro 97092 97958 114 + . . scaffold1791 WUBlastX LTR_Ngaro 97278 97706 196 + . . scaffold1791 WUBlastX LTR_Ngaro 97305 97916 185 + . . scaffold1791 WUBlastX LTR_Ngaro 97930 99558 997 + . . scaffold1791 WUBlastX LTR_Ngaro 99465 100451 362 + . . scaffold1791 WUBlastX LTR_Ngaro 100562 100831 100 + . . scaffold1791 GLEAN promoter 102733 103732 1 + . ID=CGI_10007870; scaffold1791 GLEAN promoter 103063 104062 0.896369 - . ID=CGI_10007868; scaffold1791 GLEAN mRNA 103188 103427 0.999372 - . ID=CGI_10007869; scaffold1791 GLEAN promoter 103428 104427 0.999372 - . ID=CGI_10007869; scaffold1791 GLEAN mRNA 103733 106673 1 + . ID=CGI_10007870; scaffold1791 GLEAN mRNA 107457 109404 0.999375 - . ID=CGI_10007871; scaffold1791 GLEAN promoter 109405 110404 0.999375 - . ID=CGI_10007871; scaffold1791 TRF Tandem_Repeat 109819 109862 52 + . . scaffold1791 TRF Tandem_Repeat 111094 111144 102 + . . scaffold1791 GLEAN mRNA 114854 116368 0.777728 - . ID=CGI_10007872; scaffold1791 GLEAN promoter 116369 117368 0.777728 - . ID=CGI_10007872; scaffold1791 GLEAN mRNA 119508 125582 0.499805 - . ID=CGI_10007874; scaffold1791 GLEAN promoter 125583 126582 0.499805 - . ID=CGI_10007874; scaffold1791 TRF Tandem_Repeat 140738 141049 507 + . . scaffold1791 TRF Tandem_Repeat 144945 146131 1525 + . . scaffold1791 TRF Tandem_Repeat 146961 147152 269 + . . scaffold1791 GLEAN promoter 147541 148540 0.999675 + . ID=CGI_10007875; scaffold1791 GLEAN mRNA 148541 154137 0.999675 + . ID=CGI_10007875; scaffold1791 WUBlastX LINE_CR1-L2 156533 156853 63 - . . scaffold1791 WUBlastX LINE_CR1-L2 156533 156940 36 - . . scaffold1791 TRF Tandem_Repeat 159941 160056 214 + . . scaffold1791 TRF Tandem_Repeat 160336 160379 88 + . . scaffold1791 TRF Tandem_Repeat 161191 162371 1318 + . . scaffold1791 TRF Tandem_Repeat 167434 168680 1798 + . . scaffold1791 TRF Tandem_Repeat 190611 190640 60 + . . scaffold1792 GLEAN mRNA 6255 35157 0.301123 - . ID=CGI_10012741; scaffold1792 TRF Tandem_Repeat 33247 33301 110 + . . scaffold1792 TRF Tandem_Repeat 34771 34804 59 + . . scaffold1792 GLEAN promoter 35158 36157 0.301123 - . ID=CGI_10012741; scaffold1792 GLEAN promoter 35418 36417 1 + . ID=CGI_10012742; scaffold1792 GLEAN mRNA 36418 44816 1 + . ID=CGI_10012742; scaffold1792 TRF Tandem_Repeat 42192 42224 66 + . . scaffold1792 GLEAN mRNA 46300 55453 0.998225 - . ID=CGI_10012743; scaffold1792 TRF Tandem_Repeat 50923 50976 108 + . . scaffold1792 GLEAN promoter 55454 56453 0.998225 - . ID=CGI_10012743; scaffold1792 GLEAN mRNA 55871 124119 0.789251 - . ID=CGI_10012744; scaffold1792 GLEAN promoter 58578 59577 0.440087 + . ID=CGI_10012745; scaffold1792 GLEAN mRNA 59578 63221 0.440087 + . ID=CGI_10012745; scaffold1792 TRF Tandem_Repeat 61910 61964 110 + . . scaffold1792 TRF Tandem_Repeat 64096 64133 58 + . . scaffold1792 WUBlastX LINE_Penelope 69486 69620 35 + . . scaffold1792 TRF Tandem_Repeat 111267 111308 84 + . . scaffold1792 GLEAN promoter 124120 125119 0.789251 - . ID=CGI_10012744; scaffold1792 TRF Tandem_Repeat 130803 130840 67 + . . scaffold1792 TRF Tandem_Repeat 139788 139819 55 + . . scaffold1792 TRF Tandem_Repeat 140034 141280 1644 + . . scaffold1792 WUBlastX LINE_L1-Tx1 144144 144581 54 - . . scaffold1792 WUBlastX DNA_TcMar-Fot1 150514 152358 734 - . . scaffold1792 GLEAN promoter 151815 152814 0.95907 + . ID=CGI_10012746; scaffold1792 GLEAN mRNA 152815 185116 0.95907 + . ID=CGI_10012746; scaffold1792 TRF Tandem_Repeat 158667 158745 158 + . . scaffold1792 TRF Tandem_Repeat 162362 162402 64 + . . scaffold1792 TRF Tandem_Repeat 166725 167056 547 + . . scaffold1792 TRF Tandem_Repeat 173736 173777 77 + . . scaffold1792 TRF Tandem_Repeat 173736 173783 51 + . . scaffold1792 TRF Tandem_Repeat 178104 178159 85 + . . scaffold1792 TRF Tandem_Repeat 178931 178966 72 + . . scaffold1792 TRF Tandem_Repeat 181515 181842 494 + . . scaffold1792 GLEAN mRNA 206878 210679 1 - . ID=CGI_10012747; scaffold1792 TRF Tandem_Repeat 210251 210543 192 + . . scaffold1792 TRF Tandem_Repeat 210329 210543 192 + . . scaffold1792 GLEAN promoter 210680 211679 1 - . ID=CGI_10012747; scaffold1792 TRF Tandem_Repeat 223646 223714 93 + . . scaffold1792 TRF Tandem_Repeat 224448 224524 82 + . . scaffold1792 TRF Tandem_Repeat 224459 224528 104 + . . scaffold1792 TRF Tandem_Repeat 224780 224834 110 + . . scaffold1792 TRF Tandem_Repeat 225368 225402 70 + . . scaffold1792 TRF Tandem_Repeat 225487 225530 88 + . . scaffold1792 TRF Tandem_Repeat 225770 225894 157 + . . scaffold1792 TRF Tandem_Repeat 225771 225894 173 + . . scaffold1792 WUBlastX LTR_Gypsy-Cigr 229824 230123 51 - . . scaffold1792 TRF Tandem_Repeat 236922 237265 492 + . . scaffold1792 TRF Tandem_Repeat 236922 237265 618 + . . scaffold1792 TRF Tandem_Repeat 241928 242163 274 + . . scaffold1792 TRF Tandem_Repeat 241934 242163 343 + . . scaffold1792 GLEAN promoter 242086 243085 0.841405 + . ID=CGI_10012748; scaffold1792 GLEAN mRNA 243086 246015 0.841405 + . ID=CGI_10012748; scaffold1792 GLEAN mRNA 252899 271519 0.999949 - . ID=CGI_10012749; scaffold1792 WUBlastX LINE_L2 259229 259279 26 + . . scaffold1792 WUBlastX LINE_L2 260047 261450 235 + . . scaffold1792 WUBlastX LINE_RTE-X 260278 262065 762 + . . scaffold1792 WUBlastX LINE_CR1 262326 262535 111 + . . scaffold1792 WUBlastX LINE_RTE-X 262359 264071 692 + . . scaffold1792 TRF Tandem_Repeat 265759 265808 100 + . . scaffold1792 GLEAN promoter 271520 272519 0.999949 - . ID=CGI_10012749; scaffold1792 TRF Tandem_Repeat 271596 271624 58 + . . scaffold1792 GLEAN mRNA 271852 274265 1 - . ID=CGI_10012750; scaffold1792 GLEAN promoter 274266 275265 1 - . ID=CGI_10012750; scaffold1792 TRF Tandem_Repeat 276826 276873 51 + . . scaffold1792 TRF Tandem_Repeat 276829 276889 61 + . . scaffold1792 TRF Tandem_Repeat 286209 286254 58 + . . scaffold1792 GLEAN mRNA 295154 301435 1 - . ID=CGI_10012751; scaffold1792 TRF Tandem_Repeat 296943 297015 146 + . . scaffold1792 TRF Tandem_Repeat 297043 297092 75 + . . scaffold1792 GLEAN promoter 301436 302435 1 - . ID=CGI_10012751; scaffold1792 WUBlastX LTR_Gypsy 309223 309732 89 + . . scaffold1792 WUBlastX LTR_Gypsy 309330 310250 144 + . . scaffold1792 WUBlastX LTR_Gypsy 310267 310557 152 + . . scaffold1792 WUBlastX LTR_Gypsy 310533 310772 208 + . . scaffold1792 WUBlastX LTR_Gypsy 310799 311269 183 + . . scaffold1792 WUBlastX LTR_Gypsy 310874 311269 231 + . . scaffold1792 WUBlastX LTR_Gypsy 311315 311524 48 + . . scaffold1792 WUBlastX LTR_Gypsy 316589 317098 89 + . . scaffold1792 WUBlastX LTR_Gypsy 316696 317616 144 + . . scaffold1792 WUBlastX LTR_Gypsy 317633 317923 152 + . . scaffold1792 WUBlastX LTR_Gypsy 317899 318138 208 + . . scaffold1792 WUBlastX LTR_Gypsy 318165 318635 183 + . . scaffold1792 WUBlastX LTR_Gypsy 318240 318635 231 + . . scaffold1792 WUBlastX LTR_Gypsy 318681 318890 48 + . . scaffold1792 GLEAN mRNA 322843 336201 0.992772 - . ID=CGI_10012752; scaffold1792 WUBlastX LTR_Gypsy 329256 329351 26 + . . scaffold1792 WUBlastX LTR_Gypsy 329278 330099 237 + . . scaffold1792 WUBlastX LTR_Gypsy 330103 330384 132 + . . scaffold1792 WUBlastX LTR_Gypsy 330399 330614 162 + . . scaffold1792 WUBlastX LTR_Gypsy 330628 331044 207 + . . scaffold1792 WUBlastX LTR_Gypsy 331049 332011 170 + . . scaffold1792 WUBlastX LTR_Gypsy 331097 331663 316 + . . scaffold1792 GLEAN promoter 336202 336274 0.992772 - . ID=CGI_10012752; scaffold1793 GLEAN promoter 1 165 0.777689 + . ID=CGI_10003803; scaffold1793 GLEAN mRNA 166 3032 0.777689 + . ID=CGI_10003803; scaffold1793 GLEAN promoter 2752 3751 1 + . ID=CGI_10003804; scaffold1793 GLEAN mRNA 3752 9815 1 + . ID=CGI_10003804; scaffold1793 GLEAN promoter 9838 10837 0.544852 + . ID=CGI_10003805; scaffold1793 GLEAN mRNA 10838 11847 0.544852 + . ID=CGI_10003805; scaffold1793 TRF Tandem_Repeat 13437 13618 269 + . . scaffold1793 WUBlastX DNA_TcMar-Tc1 23430 24461 414 - . . scaffold1793 WUBlastX LTR_Gypsy 24819 25277 77 + . . scaffold1793 WUBlastX LTR_Gypsy-Cigr 24909 25517 159 + . . scaffold1793 TRF Tandem_Repeat 31771 31830 66 + . . scaffold1793 TRF Tandem_Repeat 31779 31834 71 + . . scaffold1793 TRF Tandem_Repeat 35427 35465 78 + . . scaffold1793 TRF Tandem_Repeat 45769 45812 88 + . . scaffold1793 WUBlastX LTR_Ngaro 72336 72440 23 - . . scaffold1793 WUBlastX LTR_Ngaro 72493 73323 59 - . . scaffold1793 WUBlastX LTR_Ngaro 72493 72930 75 - . . scaffold1793 WUBlastX LTR_Ngaro 72514 72879 124 - . . scaffold1793 WUBlastX LTR_Ngaro 73155 73568 200 - . . scaffold1793 WUBlastX LTR_Ngaro 73227 73676 179 - . . scaffold1793 WUBlastX LTR_Ngaro 73642 73731 42 - . . scaffold1793 WUBlastX LTR_Ngaro 73730 74116 229 - . . scaffold1793 WUBlastX LTR_Ngaro 73730 74194 203 - . . scaffold1793 WUBlastX LTR_Ngaro 74109 74495 193 - . . scaffold1794 TRF Tandem_Repeat 1547 1596 100 + . . scaffold1794 TRF Tandem_Repeat 2271 2308 76 + . . scaffold1794 TRF Tandem_Repeat 2355 2430 109 + . . scaffold1794 GLEAN promoter 2942 3941 0.746659 + . ID=CGI_10019562; scaffold1794 GLEAN promoter 3867 4866 0.955362 + . ID=CGI_10019563; scaffold1794 GLEAN mRNA 3942 4499 0.746659 + . ID=CGI_10019562; scaffold1794 GLEAN mRNA 4867 15303 0.955362 + . ID=CGI_10019563; scaffold1794 TRF Tandem_Repeat 13338 14111 1303 + . . scaffold1794 TRF Tandem_Repeat 13338 14111 1303 + . . scaffold1794 TRF Tandem_Repeat 13338 14111 1303 + . . scaffold1794 GLEAN mRNA 15948 18645 0.733048 - . ID=CGI_10019564; scaffold1794 GLEAN promoter 18646 19645 0.733048 - . ID=CGI_10019564; scaffold1794 GLEAN promoter 19538 20537 0.51959 + . ID=CGI_10019565; scaffold1794 GLEAN mRNA 20538 42560 0.51959 + . ID=CGI_10019565; scaffold1794 TRF Tandem_Repeat 27452 27555 109 + . . scaffold1794 WUBlastX LINE_RTE-X 27751 28095 93 - . . scaffold1794 WUBlastX LINE_RTE-X 27877 28092 96 - . . scaffold1794 WUBlastX LINE_RTE-X 27880 28140 80 - . . scaffold1794 WUBlastX LINE_L1-Tx1 32611 33075 48 - . . scaffold1794 GLEAN promoter 41711 42710 0.723463 + . ID=CGI_10019566; scaffold1794 GLEAN mRNA 42711 62714 0.723463 + . ID=CGI_10019566; scaffold1794 TRF Tandem_Repeat 43159 43217 57 + . . scaffold1794 GLEAN mRNA 48287 63430 0.625796 - . ID=CGI_10019567; scaffold1794 TRF Tandem_Repeat 62061 62102 66 + . . scaffold1794 GLEAN promoter 63431 64430 0.625796 - . ID=CGI_10019567; scaffold1794 GLEAN mRNA 63579 68209 1 - . ID=CGI_10019568; scaffold1794 WUBlastX LINE_RTE-BovB 66669 67031 153 + . . scaffold1794 GLEAN promoter 67933 68932 0.927071 + . ID=CGI_10019569; scaffold1794 GLEAN promoter 68210 69209 1 - . ID=CGI_10019568; scaffold1794 GLEAN mRNA 68933 87180 0.927071 + . ID=CGI_10019569; scaffold1794 TRF Tandem_Repeat 75884 76003 101 + . . scaffold1794 TRF Tandem_Repeat 75884 76001 114 + . . scaffold1794 TRF Tandem_Repeat 76635 76759 74 + . . scaffold1794 GLEAN mRNA 89740 92084 1 - . ID=CGI_10019570; scaffold1794 GLEAN promoter 92085 93084 1 - . ID=CGI_10019570; scaffold1794 GLEAN promoter 93964 94963 0.999676 + . ID=CGI_10019571; scaffold1794 GLEAN mRNA 94964 108492 0.999676 + . ID=CGI_10019571; scaffold1794 TRF Tandem_Repeat 102406 102689 175 + . . scaffold1794 TRF Tandem_Repeat 102411 102727 79 + . . scaffold1794 TRF Tandem_Repeat 102415 102760 507 + . . scaffold1794 TRF Tandem_Repeat 102907 103302 519 + . . scaffold1794 TRF Tandem_Repeat 104977 105126 162 + . . scaffold1794 TRF Tandem_Repeat 106492 106550 118 + . . scaffold1794 TRF Tandem_Repeat 107019 107409 649 + . . scaffold1794 GLEAN promoter 113146 114145 0.999432 + . ID=CGI_10019572; scaffold1794 GLEAN mRNA 114146 116059 0.999432 + . ID=CGI_10019572; scaffold1794 GLEAN mRNA 118730 132640 0.941989 - . ID=CGI_10019573; scaffold1794 TRF Tandem_Repeat 126182 126279 73 + . . scaffold1794 TRF Tandem_Repeat 126218 126288 70 + . . scaffold1794 GLEAN promoter 132641 133640 0.941989 - . ID=CGI_10019573; scaffold1794 TRF Tandem_Repeat 133761 133803 68 + . . scaffold1794 TRF Tandem_Repeat 133850 133995 108 + . . scaffold1794 TRF Tandem_Repeat 139678 139713 72 + . . scaffold1794 TRF Tandem_Repeat 143804 144092 292 + . . scaffold1794 TRF Tandem_Repeat 144953 144980 56 + . . scaffold1794 GLEAN mRNA 147969 156925 0.840332 - . ID=CGI_10019574; scaffold1794 GLEAN promoter 156926 157925 0.840332 - . ID=CGI_10019574; scaffold1794 GLEAN promoter 158229 159228 0.879994 + . ID=CGI_10019575; scaffold1794 GLEAN mRNA 159229 170280 0.879994 + . ID=CGI_10019575; scaffold1794 TRF Tandem_Repeat 160333 160608 498 + . . scaffold1794 TRF Tandem_Repeat 165914 165951 51 + . . scaffold1794 TRF Tandem_Repeat 168970 169363 425 + . . scaffold1794 TRF Tandem_Repeat 172461 173123 1056 + . . scaffold1794 GLEAN promoter 173097 174096 0.983519 + . ID=CGI_10019576; scaffold1794 GLEAN mRNA 174097 184463 0.983519 + . ID=CGI_10019576; scaffold1794 GLEAN promoter 189103 190102 0.555457 + . ID=CGI_10019577; scaffold1794 GLEAN mRNA 190103 194998 0.555457 + . ID=CGI_10019577; scaffold1794 TRF Tandem_Repeat 199801 199862 124 + . . scaffold1794 GLEAN mRNA 202430 246062 0.999375 - . ID=CGI_10019578; scaffold1794 TRF Tandem_Repeat 218812 219736 1372 + . . scaffold1794 TRF Tandem_Repeat 226241 227166 1238 + . . scaffold1794 TRF Tandem_Repeat 227167 227635 688 + . . scaffold1794 TRF Tandem_Repeat 231757 232139 577 + . . scaffold1794 TRF Tandem_Repeat 237853 237982 93 + . . scaffold1794 TRF Tandem_Repeat 237898 238044 73 + . . scaffold1794 TRF Tandem_Repeat 239013 239780 736 + . . scaffold1794 TRF Tandem_Repeat 239826 239857 55 + . . scaffold1794 GLEAN promoter 245428 246427 1 + . ID=CGI_10019579; scaffold1794 GLEAN promoter 246063 247062 0.999375 - . ID=CGI_10019578; scaffold1794 GLEAN mRNA 246428 258270 1 + . ID=CGI_10019579; scaffold1794 TRF Tandem_Repeat 250990 251581 734 + . . scaffold1794 TRF Tandem_Repeat 254675 254944 364 + . . scaffold1794 TRF Tandem_Repeat 254998 255033 54 + . . scaffold1794 TRF Tandem_Repeat 255202 256014 1020 + . . scaffold1794 TRF Tandem_Repeat 257913 258122 379 + . . scaffold1794 GLEAN promoter 258505 259504 1 + . ID=CGI_10019581; scaffold1794 GLEAN mRNA 259505 262467 1 + . ID=CGI_10019581; scaffold1794 GLEAN mRNA 263674 270093 1 - . ID=CGI_10019582; scaffold1794 TRF Tandem_Repeat 265988 266125 253 + . . scaffold1794 TRF Tandem_Repeat 267056 267171 158 + . . scaffold1794 TRF Tandem_Repeat 267061 267138 74 + . . scaffold1794 TRF Tandem_Repeat 267362 267880 826 + . . scaffold1794 GLEAN promoter 270094 271093 1 - . ID=CGI_10019582; scaffold1794 GLEAN mRNA 271028 279646 0.999395 - . ID=CGI_10019583; scaffold1794 GLEAN promoter 279647 280646 0.999395 - . ID=CGI_10019583; scaffold1794 GLEAN promoter 279693 280692 1 + . ID=CGI_10019584; scaffold1794 GLEAN mRNA 280693 284909 1 + . ID=CGI_10019584; scaffold1794 GLEAN mRNA 286866 308724 0.791791 - . ID=CGI_10019585; scaffold1794 TRF Tandem_Repeat 295984 296354 553 + . . scaffold1794 TRF Tandem_Repeat 298519 298632 106 + . . scaffold1794 TRF Tandem_Repeat 301355 301406 104 + . . scaffold1794 TRF Tandem_Repeat 306792 306816 50 + . . scaffold1794 GLEAN promoter 308725 309724 0.791791 - . ID=CGI_10019585; scaffold1794 GLEAN promoter 308781 309780 0.999998 + . ID=CGI_10019586; scaffold1794 GLEAN mRNA 309781 311110 0.999998 + . ID=CGI_10019586; scaffold1794 GLEAN mRNA 311270 317809 0.835843 - . ID=CGI_10019587; scaffold1794 GLEAN promoter 317810 318809 0.835843 - . ID=CGI_10019587; scaffold1794 WUBlastX LINE_L2 318036 318092 24 + . . scaffold1794 WUBlastX LINE_L2 318103 318474 94 + . . scaffold1794 WUBlastX LINE_CR1-L2 318588 318677 28 + . . scaffold1794 TRF Tandem_Repeat 325261 326193 1145 + . . scaffold1794 GLEAN promoter 331575 332574 0.999598 + . ID=CGI_10019588; scaffold1794 GLEAN mRNA 332575 359054 0.999598 + . ID=CGI_10019588; scaffold1794 TRF Tandem_Repeat 345998 346328 301 + . . scaffold1794 TRF Tandem_Repeat 351679 352783 2104 + . . scaffold1794 GLEAN mRNA 365293 383732 0.999287 - . ID=CGI_10019589; scaffold1794 GLEAN promoter 383733 384732 0.999287 - . ID=CGI_10019589; scaffold1794 TRF Tandem_Repeat 398983 399028 56 + . . scaffold1794 GLEAN mRNA 405528 411526 1 - . ID=CGI_10019590; scaffold1794 TRF Tandem_Repeat 406819 406849 53 + . . scaffold1794 GLEAN promoter 411527 412526 1 - . ID=CGI_10019590; scaffold1794 TRF Tandem_Repeat 419594 419638 76 + . . scaffold1794 GLEAN mRNA 458212 458638 0.989021 - . ID=CGI_10019591; scaffold1794 GLEAN promoter 458639 459638 0.989021 - . ID=CGI_10019591; scaffold1794 WUBlastX DNA_Sola 467641 467874 51 - . . scaffold1794 WUBlastX DNA_PiggyBac 472943 473209 82 + . . scaffold1794 GLEAN mRNA 474382 475512 0.741193 - . ID=CGI_10019592; scaffold1794 GLEAN promoter 475513 476512 0.741193 - . ID=CGI_10019592; scaffold1794 WUBlastX LTR_Gypsy-Cigr 477577 478131 53 - . . scaffold1794 WUBlastX LTR_Gypsy-Cigr 477688 478173 67 - . . scaffold1794 WUBlastX LTR_Gypsy 477697 478272 51 - . . scaffold1794 TRF Tandem_Repeat 478593 478695 170 + . . scaffold1794 TRF Tandem_Repeat 484503 485481 1109 + . . scaffold1794 TRF Tandem_Repeat 490583 491493 983 + . . scaffold1794 WUBlastX LINE_RTE-X 503150 503704 51 + . . scaffold1794 WUBlastX LINE_RTE-X 504688 504906 68 + . . scaffold1794 WUBlastX LINE_RTE-X 504730 504906 72 + . . scaffold1794 WUBlastX LINE_RTE-X 505497 505589 28 + . . scaffold1794 TRF Tandem_Repeat 506083 506145 56 + . . scaffold1794 WUBlastX LINE_RTE-X 507834 508232 25 + . . scaffold1794 WUBlastX DNA_IS4EU 509033 509713 176 + . . scaffold1794 GLEAN promoter 515730 516729 1 + . ID=CGI_10019593; scaffold1794 GLEAN mRNA 516730 518009 1 + . ID=CGI_10019593; scaffold1794 GLEAN mRNA 527816 531726 1 - . ID=CGI_10019594; scaffold1794 GLEAN promoter 531727 532726 1 - . ID=CGI_10019594; scaffold1794 GLEAN promoter 536919 537918 1 + . ID=CGI_10019595; scaffold1794 GLEAN mRNA 537919 541057 1 + . ID=CGI_10019595; scaffold1794 WUBlastX LINE_L1-Tx1 547557 547922 54 - . . scaffold1794 WUBlastX LINE_L1-Tx1 547931 548986 681 - . . scaffold1794 TRF Tandem_Repeat 549020 550142 1533 + . . scaffold1794 TRF Tandem_Repeat 550173 550204 64 + . . scaffold1794 WUBlastX DNA_Academ 551556 552140 217 - . . scaffold1794 GLEAN mRNA 551697 552194 0.854769 - . ID=CGI_10019596; scaffold1794 WUBlastX DNA_Academ 551706 552011 226 - . . scaffold1794 GLEAN promoter 552195 553194 0.854769 - . ID=CGI_10019596; scaffold1794 WUBlastX DNA_Academ 552232 552786 300 - . . scaffold1794 WUBlastX DNA_Academ 552840 553094 150 - . . scaffold1794 WUBlastX DNA_Academ 553078 553200 37 - . . scaffold1794 WUBlastX DNA_Academ 553335 553481 35 - . . scaffold1794 GLEAN promoter 559689 560688 0.776732 + . ID=CGI_10019597; scaffold1794 GLEAN mRNA 560689 561090 0.776732 + . ID=CGI_10019597; scaffold1794 GLEAN mRNA 563406 563666 0.725551 - . ID=CGI_10019598; scaffold1794 GLEAN promoter 563667 564666 0.725551 - . ID=CGI_10019598; scaffold1794 GLEAN mRNA 563811 564200 0.577458 - . ID=CGI_10019599; scaffold1794 GLEAN promoter 564201 565200 0.577458 - . ID=CGI_10019599; scaffold1794 TRF Tandem_Repeat 575566 575659 125 + . . scaffold1794 WUBlastX LINE_L2 576538 576576 20 + . . scaffold1794 WUBlastX LINE_L1 577001 577105 20 + . . scaffold1794 WUBlastX LINE_RTE-X 577019 580417 984 + . . scaffold1794 WUBlastX LINE_RTE-X 577988 580411 1055 + . . scaffold1794 TRF Tandem_Repeat 581552 581657 59 + . . scaffold1794 TRF Tandem_Repeat 581552 581648 65 + . . scaffold1794 TRF Tandem_Repeat 581552 581657 68 + . . scaffold1794 TRF Tandem_Repeat 581564 581633 50 + . . scaffold1794 GLEAN mRNA 591161 591451 0.999372 - . ID=CGI_10019600; scaffold1794 WUBlastX LINE_Penelope 591347 591457 81 + . . scaffold1794 GLEAN promoter 591452 592451 0.999372 - . ID=CGI_10019600; scaffold1794 WUBlastX LTR_DIRS 593495 593749 149 - . . scaffold1794 WUBlastX LTR_DIRS 593721 594176 159 - . . scaffold1794 TRF Tandem_Repeat 594453 594754 317 + . . scaffold1794 WUBlastX LTR_DIRS 594787 595257 61 - . . scaffold1794 WUBlastX LTR_Gypsy 595239 595277 26 - . . scaffold1794 WUBlastX LTR_Gypsy 595753 597051 442 - . . scaffold1794 WUBlastX LTR_Gypsy 595954 597387 577 - . . scaffold1794 WUBlastX LTR_Gypsy 595957 597090 880 - . . scaffold1794 TRF Tandem_Repeat 597459 597539 67 + . . scaffold1794 WUBlastX LTR_Gypsy 606752 607195 38 - . . scaffold1794 WUBlastX LTR_Gypsy 606896 607129 98 - . . scaffold1794 WUBlastX LTR_Gypsy 606953 607129 106 - . . scaffold1794 WUBlastX LTR_Gypsy-Cigr 606962 607183 92 - . . scaffold1794 WUBlastX LTR_Gypsy 606980 607126 114 - . . scaffold1794 WUBlastX LTR_ERV1 606986 607249 73 - . . scaffold1795 GLEAN mRNA 4133 10027 0.728674 - . ID=CGI_10002545; scaffold1795 GLEAN promoter 10028 11027 0.728674 - . ID=CGI_10002545; scaffold1795 GLEAN promoter 17552 18551 0.995922 + . ID=CGI_10002547; scaffold1795 GLEAN mRNA 17696 17923 0.999998 - . ID=CGI_10002546; scaffold1795 GLEAN promoter 17924 18923 0.999998 - . ID=CGI_10002546; scaffold1795 GLEAN mRNA 18552 37970 0.995922 + . ID=CGI_10002547; scaffold1795 GLEAN mRNA 44808 46478 0.999999 - . ID=CGI_10002548; scaffold1795 GLEAN promoter 46479 47478 0.999999 - . ID=CGI_10002548; scaffold1796 TRF Tandem_Repeat 3870 3926 114 + . . scaffold1796 WUBlastX LINE_L1-Tx1 5574 5645 23 + . . scaffold1796 WUBlastX LINE_L1-Tx1 5975 6658 149 + . . scaffold1796 WUBlastX LINE_L1-Tx1 6118 7164 156 + . . scaffold1796 WUBlastX LINE_L1-Tx1 6526 7143 178 + . . scaffold1796 WUBlastX LINE_L1 6664 7155 238 + . . scaffold1796 WUBlastX LINE_L1-Tx1 6664 7485 30 + . . scaffold1796 WUBlastX LINE_L1-Tx1 7394 7630 37 + . . scaffold1796 WUBlastX LINE_L1 7394 7543 57 + . . scaffold1796 WUBlastX LINE_L1-Tx1 7394 7672 36 + . . scaffold1796 WUBlastX DNA_IS4EU 9058 9243 59 + . . scaffold1796 TRF Tandem_Repeat 9368 10016 840 + . . scaffold1796 WUBlastX DNA_IS4EU 10152 10448 128 + . . scaffold1796 WUBlastX DNA_IS4EU 10170 10616 71 + . . scaffold1796 WUBlastX DNA_Kolobok-IS4 10468 10644 49 + . . scaffold1796 WUBlastX DNA_Kolobok-IS4 10893 11096 72 - . . scaffold1796 WUBlastX DNA_Kolobok-IS4 11105 11314 25 - . . scaffold1796 WUBlastX DNA_IS4EU 11153 11302 86 - . . scaffold1796 WUBlastX DNA_Kolobok-IS4 11296 11586 24 - . . scaffold1796 WUBlastX DNA_Kolobok-IS4 11305 11487 78 - . . scaffold1796 TRF Tandem_Repeat 20118 20392 331 + . . scaffold1796 GLEAN promoter 34120 35119 0.889784 + . ID=CGI_10005838; scaffold1796 WUBlastX DNA_hAT-Tip100 34631 34738 48 + . . scaffold1796 WUBlastX DNA_hAT-Tip100 34735 34857 40 + . . scaffold1796 GLEAN mRNA 35120 45263 0.889784 + . ID=CGI_10005838; scaffold1796 TRF Tandem_Repeat 50679 50711 57 + . . scaffold1796 WUBlastX LTR_Gypsy 59781 60062 22 + . . scaffold1796 WUBlastX LTR_Gypsy 59922 60146 34 + . . scaffold1796 WUBlastX LTR_ERV1 62595 63056 54 + . . scaffold1796 WUBlastX LINE_L1-Tx1 62676 63461 127 + . . scaffold1796 WUBlastX LINE_L1 62808 63458 185 + . . scaffold1796 WUBlastX LINE_CR1 63510 63962 74 + . . scaffold1796 WUBlastX LINE_RTE-X 63627 66890 1028 + . . scaffold1796 TRF Tandem_Repeat 67051 67110 57 + . . scaffold1796 TRF Tandem_Repeat 67881 67940 57 + . . scaffold1796 WUBlastX LINE_RTE-X 70543 70782 86 + . . scaffold1796 WUBlastX LINE_RTE-X 70543 70845 67 + . . scaffold1796 WUBlastX LINE_RTE-X 70576 70770 112 + . . scaffold1796 TRF Tandem_Repeat 71635 71667 57 + . . scaffold1796 TRF Tandem_Repeat 71910 72006 185 + . . scaffold1796 WUBlastX LINE_L2 72585 72647 37 + . . scaffold1796 TRF Tandem_Repeat 73755 73791 74 + . . scaffold1796 TRF Tandem_Repeat 73791 73842 104 + . . scaffold1796 TRF Tandem_Repeat 73958 74001 63 + . . scaffold1796 TRF Tandem_Repeat 82242 82299 109 + . . scaffold1796 GLEAN mRNA 82761 83774 0.836238 - . ID=CGI_10005839; scaffold1796 GLEAN promoter 83775 84774 0.836238 - . ID=CGI_10005839; scaffold1796 TRF Tandem_Repeat 84389 84418 60 + . . scaffold1796 TRF Tandem_Repeat 87630 87692 108 + . . scaffold1796 TRF Tandem_Repeat 95016 95075 57 + . . scaffold1796 TRF Tandem_Repeat 95016 95075 93 + . . scaffold1796 TRF Tandem_Repeat 95508 95624 94 + . . scaffold1796 TRF Tandem_Repeat 100373 100488 63 + . . scaffold1796 TRF Tandem_Repeat 105012 106085 946 + . . scaffold1796 TRF Tandem_Repeat 105012 106085 959 + . . scaffold1796 TRF Tandem_Repeat 105012 105767 785 + . . scaffold1796 TRF Tandem_Repeat 105789 106086 215 + . . scaffold1796 TRF Tandem_Repeat 107690 107741 104 + . . scaffold1796 TRF Tandem_Repeat 111708 111745 58 + . . scaffold1796 WUBlastX RC_Helitron 113000 113263 75 - . . scaffold1796 TRF Tandem_Repeat 117389 117534 195 + . . scaffold1796 TRF Tandem_Repeat 118163 118416 400 + . . scaffold1796 TRF Tandem_Repeat 119954 120020 89 + . . scaffold1796 WUBlastX DNA_IS4EU 136050 136247 70 + . . scaffold1796 WUBlastX DNA_IS4EU 136488 136901 260 - . . scaffold1796 WUBlastX DNA_IS4EU 137018 137065 29 - . . scaffold1797 GLEAN promoter 1 138 1 + . ID=CGI_10002881; scaffold1797 GLEAN mRNA 139 13547 1 + . ID=CGI_10002881; scaffold1797 TRF Tandem_Repeat 10044 10086 79 + . . scaffold1797 TRF Tandem_Repeat 10133 10164 64 + . . scaffold1797 TRF Tandem_Repeat 16264 16291 56 + . . scaffold1797 WUBlastX LINE_RTE-X 21411 21605 48 - . . scaffold1797 WUBlastX LINE_RTE-X 21584 21736 67 - . . scaffold1797 WUBlastX LINE_RTE-X 21599 21829 63 - . . scaffold1797 WUBlastX LINE_RTE-X 21775 21987 36 - . . scaffold1797 WUBlastX LINE_RTE-X 21784 21909 40 - . . scaffold1797 TRF Tandem_Repeat 23885 23940 112 + . . scaffold1797 WUBlastX LTR_Gypsy 27441 27581 38 - . . scaffold1797 WUBlastX LTR_Gypsy 27468 27587 54 - . . scaffold1797 WUBlastX LTR_Gypsy 27566 29164 849 - . . scaffold1797 WUBlastX LINE_Penelope 30576 32495 1021 - . . scaffold1797 WUBlastX LINE_CR1 32463 32696 43 - . . scaffold1797 WUBlastX LINE_L2 32553 32714 58 - . . scaffold1797 WUBlastX LINE_L2 32580 32729 64 - . . scaffold1797 TRF Tandem_Repeat 33503 33545 59 + . . scaffold1797 TRF Tandem_Repeat 36347 36388 84 + . . scaffold1797 TRF Tandem_Repeat 38912 39360 488 + . . scaffold1797 GLEAN promoter 42934 43933 0.54353 + . ID=CGI_10002882; scaffold1797 GLEAN promoter 43306 44305 0.999372 + . ID=CGI_10002883; scaffold1797 GLEAN promoter 43697 44696 0.618222 + . ID=CGI_10002884; scaffold1797 GLEAN mRNA 43934 44269 0.54353 + . ID=CGI_10002882; scaffold1797 GLEAN mRNA 44306 44497 0.999372 + . ID=CGI_10002883; scaffold1797 GLEAN mRNA 44697 44870 0.618222 + . ID=CGI_10002884; scaffold1797 WUBlastX RC_Helitron 47363 47869 54 + . . scaffold1797 WUBlastX RC_Helitron 48280 48771 364 + . . scaffold1797 TRF Tandem_Repeat 49089 49142 90 + . . scaffold1797 WUBlastX DNA_TcMar-Marin 55381 55695 32 - . . scaffold1797 WUBlastX DNA_TcMar-Marin 55423 55662 68 - . . scaffold1797 WUBlastX LINE_Penelope 56176 56796 38 - . . scaffold1797 WUBlastX LINE_Penelope 56281 57432 80 - . . scaffold1797 WUBlastX LINE_Penelope 56281 57180 88 - . . scaffold1797 WUBlastX LINE_Penelope 56281 57024 108 - . . scaffold1797 WUBlastX LINE_Penelope 56293 56793 118 - . . scaffold1798 WUBlastX DNA_IS4EU 19 486 204 + . . scaffold1798 TRF Tandem_Repeat 10765 10826 63 + . . scaffold1798 TRF Tandem_Repeat 10772 10830 51 + . . scaffold1798 WUBlastX DNA_IS4EU 29348 29476 50 - . . scaffold1798 WUBlastX DNA_IS4EU 29369 29530 39 - . . scaffold1798 WUBlastX DNA_IS4EU 29657 29830 33 - . . scaffold1798 WUBlastX DNA_IS4EU 29684 29755 42 - . . scaffold1798 WUBlastX DNA_Kolobok-IS4 29684 29857 29 - . . scaffold1798 WUBlastX DNA_IS4EU 30008 30163 27 - . . scaffold1798 WUBlastX DNA_IS4EU 30291 30395 50 - . . scaffold1798 WUBlastX DNA_Kolobok-IS4 30294 30419 29 - . . scaffold1799 GLEAN mRNA 190 18733 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 4601 4632 64 + . . scaffold1799 TRF Tandem_Repeat 16320 16613 190 + . . scaffold1799 TRF Tandem_Repeat 16338 16591 61 + . . scaffold1799 TRF Tandem_Repeat 16350 16603 216 + . . scaffold1799 TRF Tandem_Repeat 16374 16603 193 + . . scaffold1799 TRF Tandem_Repeat 17798 17904 124 + . . scaffold1799 TRF Tandem_Repeat 18111 18285 126 + . . scaffold1799 TRF Tandem_Repeat 18224 18524 170 + . . scaffold1799 TRF Tandem_Repeat 18275 18553 107 + . . scaffold1799 GLEAN promoter 18734 19733 1 - . ID=CGI_10003629; scaffold1799 TRF Tandem_Repeat 19879 20118 181 + . . scaffold1799 TRF Tandem_Repeat 21191 22058 914 + . . scaffold1799 TRF Tandem_Repeat 21198 22084 839 + . . scaffold1799 GLEAN promoter 27797 28796 0.911813 + . ID=CGI_10003630; scaffold1799 GLEAN mRNA 28797 32005 0.911813 + . ID=CGI_10003630; scaffold1799 TRF Tandem_Repeat 32512 34526 2875 + . . scaffold1799 GLEAN mRNA 46929 66946 0.999949 - . ID=CGI_10003631; scaffold1799 TRF Tandem_Repeat 52623 52892 261 + . . scaffold1799 TRF Tandem_Repeat 53930 53974 81 + . . scaffold1799 TRF Tandem_Repeat 53982 54022 64 + . . scaffold1799 TRF Tandem_Repeat 54378 54457 153 + . . scaffold1799 WUBlastX LTR_Ngaro 57831 57986 61 - . . scaffold1799 WUBlastX LTR_Ngaro 57855 58787 67 - . . scaffold1799 WUBlastX LTR_Ngaro 57876 58031 81 - . . scaffold1799 WUBlastX LTR_Ngaro 58419 58781 88 - . . scaffold1799 WUBlastX LTR_Ngaro 58772 58969 75 - . . scaffold1799 WUBlastX LTR_Ngaro 58956 59066 76 - . . scaffold1799 WUBlastX LTR_Ngaro 59073 59267 97 - . . scaffold1799 WUBlastX LTR_Ngaro 59240 59566 229 - . . scaffold1799 WUBlastX LTR_Ngaro 59575 60009 289 - . . scaffold1799 TRF Tandem_Repeat 60012 60424 307 + . . scaffold1799 TRF Tandem_Repeat 60025 60460 349 + . . scaffold1799 TRF Tandem_Repeat 65540 65583 61 + . . scaffold1799 GLEAN promoter 66947 67946 0.999949 - . ID=CGI_10003631; scaffold1799 WUBlastX DNA_Harbinger 66957 67166 69 + . . scaffold1799 TRF Tandem_Repeat 67367 67397 62 + . . scaffold1799 TRF Tandem_Repeat 67397 67421 50 + . . scaffold1799 WUBlastX DNA_Harbinger 69956 70168 90 + . . scaffold1799 WUBlastX DNA_Harbinger 72824 73279 285 + . . scaffold1799 WUBlastX LTR_Gypsy 74143 75138 417 - . . scaffold1799 WUBlastX LTR_Gypsy 74314 75138 744 - . . scaffold1799 WUBlastX LTR_Gypsy 75142 76647 1188 - . . scaffold1799 WUBlastX LTR_Gypsy 76231 76737 190 - . . scaffold1799 TRF Tandem_Repeat 76768 76927 97 + . . scaffold1799 TRF Tandem_Repeat 76783 76917 98 + . . scaffold1799 WUBlastX LTR_Gypsy 76929 77204 65 - . . scaffold1799 WUBlastX LTR_Gypsy 76974 77489 243 - . . scaffold1799 WUBlastX DNA_Harbinger 77497 77808 205 + . . scaffold18 WUBlastX DNA_hAT-Tip100 1456 2184 105 + . . scaffold18 WUBlastX DNA_hAT-Tip100 1774 2457 229 + . . scaffold18 WUBlastX DNA_hAT-Tip100 2353 2478 41 + . . scaffold18 WUBlastX DNA_hAT-Tip100 2460 2612 20 + . . scaffold18 WUBlastX DNA_hAT-Tip100 2487 2594 44 + . . scaffold18 TRF Tandem_Repeat 10989 11051 60 + . . scaffold18 TRF Tandem_Repeat 14249 14331 139 + . . scaffold18 WUBlastX LINE_RTE-X 14945 15292 97 + . . scaffold18 WUBlastX LINE_RTE-X 14948 15169 100 + . . scaffold18 WUBlastX LINE_L2 18840 19646 302 + . . scaffold18 WUBlastX LINE_L2 18990 19652 577 + . . scaffold18 WUBlastX LINE_L2 19624 20529 515 + . . scaffold18 WUBlastX LINE_L2 20570 20677 35 + . . scaffold18 WUBlastX LINE_CR1-L2 20588 20680 49 + . . scaffold18 WUBlastX LINE_L2 28185 28370 21 + . . scaffold18 WUBlastX LINE_L2 28407 29012 35 + . . scaffold18 WUBlastX LINE_L2 28611 29009 87 + . . scaffold18 WUBlastX LINE_L2 28662 29132 41 + . . scaffold18 WUBlastX LINE_L2 28677 29012 92 + . . scaffold18 WUBlastX LINE_L2 30278 30640 115 + . . scaffold18 WUBlastX LINE_L2 30625 30810 40 + . . scaffold18 WUBlastX LINE_L2 30634 30762 77 + . . scaffold180 TRF Tandem_Repeat 699 748 100 + . . scaffold180 TRF Tandem_Repeat 959 1011 106 + . . scaffold180 GLEAN promoter 6966 7965 0.558253 + . ID=CGI_10004232; scaffold180 GLEAN mRNA 7966 27461 0.558253 + . ID=CGI_10004232; scaffold180 TRF Tandem_Repeat 21802 21843 84 + . . scaffold180 TRF Tandem_Repeat 22020 22063 79 + . . scaffold180 TRF Tandem_Repeat 23210 23244 70 + . . scaffold180 TRF Tandem_Repeat 26701 26735 70 + . . scaffold180 GLEAN mRNA 28202 49111 0.648909 - . ID=CGI_10004233; scaffold180 TRF Tandem_Repeat 30626 30798 188 + . . scaffold180 TRF Tandem_Repeat 30876 31391 373 + . . scaffold180 TRF Tandem_Repeat 30881 31391 443 + . . scaffold180 WUBlastX RC_Helitron 36819 37214 71 - . . scaffold180 TRF Tandem_Repeat 45386 45418 66 + . . scaffold180 GLEAN promoter 49112 50111 0.648909 - . ID=CGI_10004233; scaffold180 TRF Tandem_Repeat 50585 50625 73 + . . scaffold180 TRF Tandem_Repeat 56403 56430 56 + . . scaffold180 WUBlastX LINE_Penelope 56433 56477 24 - . . scaffold180 WUBlastX LINE_Penelope 56522 56806 82 - . . scaffold180 WUBlastX DNA_Maverick 64817 65530 243 + . . scaffold180 WUBlastX DNA_Maverick 65662 65748 24 + . . scaffold180 WUBlastX DNA_Maverick 65680 65739 37 + . . scaffold180 WUBlastX DNA_Maverick 65686 65760 34 + . . scaffold180 WUBlastX DNA_Maverick 65695 65748 43 + . . scaffold180 WUBlastX DNA_Maverick 65698 65796 28 + . . scaffold180 WUBlastX DNA_Maverick 65707 65943 24 + . . scaffold180 TRF Tandem_Repeat 65990 66039 75 + . . scaffold180 TRF Tandem_Repeat 66432 66491 120 + . . scaffold180 WUBlastX DNA_Maverick 66589 67680 342 + . . scaffold180 WUBlastX LTR_Gypsy 68670 69764 540 - . . scaffold180 WUBlastX LTR_Gypsy 68841 71624 1530 - . . scaffold180 WUBlastX LTR_Gypsy 72251 72730 145 + . . scaffold180 WUBlastX LTR_Gypsy 72335 72745 166 + . . scaffold180 WUBlastX DNA_Maverick 72956 73156 96 + . . scaffold180 WUBlastX DNA_Maverick 73146 73601 408 + . . scaffold180 WUBlastX DNA_Maverick 73597 74073 208 + . . scaffold180 GLEAN promoter 76159 77158 0.996819 + . ID=CGI_10004234; scaffold180 TRF Tandem_Repeat 76306 76403 54 + . . scaffold180 TRF Tandem_Repeat 76331 76436 108 + . . scaffold180 TRF Tandem_Repeat 76346 76427 80 + . . scaffold180 WUBlastX DNA_Maverick 76447 76800 195 + . . scaffold180 WUBlastX DNA_Maverick 76450 76908 139 + . . scaffold180 WUBlastX DNA_Maverick 76800 77108 108 + . . scaffold180 GLEAN mRNA 77159 77455 0.996819 + . ID=CGI_10004234; scaffold180 WUBlastX DNA_Maverick 77947 78987 358 + . . scaffold180 TRF Tandem_Repeat 81172 81808 692 + . . scaffold180 GLEAN promoter 85707 86706 0.997056 + . ID=CGI_10004235; scaffold180 GLEAN mRNA 86707 88737 0.997056 + . ID=CGI_10004235; scaffold180 TRF Tandem_Repeat 90904 90938 61 + . . scaffold1800 GLEAN promoter 1 805 0.179817 + . ID=CGI_10016397; scaffold1800 GLEAN mRNA 806 94076 0.179817 + . ID=CGI_10016397; scaffold1800 WUBlastX LTR_Gypsy-Cigr 6034 6642 384 + . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 6034 7548 328 + . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 7151 7621 113 + . . scaffold1800 WUBlastX LTR_Gypsy 7175 7711 75 + . . scaffold1800 WUBlastX LTR_Gypsy 7906 8211 61 + . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 8011 8217 87 + . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 8065 8253 120 + . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 8232 8408 81 + . . scaffold1800 WUBlastX LTR_Gypsy-Cigr 8402 8575 70 + . . scaffold1800 WUBlastX LTR_Gypsy 8423 8662 31 + . . scaffold1800 TRF Tandem_Repeat 16907 16956 57 + . . scaffold1800 TRF Tandem_Repeat 17784 17867 109 + . . scaffold1800 WUBlastX LINE_L1-Tx1 32505 32834 77 - . . scaffold1800 WUBlastX LINE_L1-Tx1 32523 32945 68 - . . scaffold1800 TRF Tandem_Repeat 45688 45724 74 + . . scaffold1800 TRF Tandem_Repeat 47378 47455 72 + . . scaffold1800 WUBlastX DNA_P 55920 56039 77 + . . scaffold1800 WUBlastX LTR_Gypsy 59388 59513 54 + . . scaffold1800 WUBlastX LTR_Pao 59758 59925 30 + . . scaffold1800 TRF Tandem_Repeat 71953 72006 108 + . . scaffold1800 WUBlastX LTR_Copia 86821 86871 21 + . . scaffold1800 TRF Tandem_Repeat 94456 94503 96 + . . scaffold1800 GLEAN mRNA 94548 111010 0.999101 - . ID=CGI_10016398; scaffold1800 WUBlastX LINE_CR1 106857 107192 52 + . . scaffold1800 WUBlastX LINE_CR1-L2 106944 107234 142 + . . scaffold1800 WUBlastX LINE_L2 107013 107243 172 + . . scaffold1800 WUBlastX LINE_CR1-L2 107215 107853 208 + . . scaffold1800 GLEAN promoter 111011 112010 0.999101 - . ID=CGI_10016398; scaffold1800 GLEAN promoter 111680 112679 1 + . ID=CGI_10016399; scaffold1800 GLEAN mRNA 112680 127522 1 + . ID=CGI_10016399; scaffold1800 TRF Tandem_Repeat 121730 122153 469 + . . scaffold1800 TRF Tandem_Repeat 121733 122551 508 + . . scaffold1800 TRF Tandem_Repeat 122288 122551 456 + . . scaffold1800 TRF Tandem_Repeat 123269 123317 62 + . . scaffold1800 TRF Tandem_Repeat 123347 124100 1101 + . . scaffold1800 TRF Tandem_Repeat 124103 124860 1085 + . . scaffold1800 GLEAN mRNA 134247 137691 1 - . ID=CGI_10016400; scaffold1800 GLEAN promoter 137692 138691 1 - . ID=CGI_10016400; scaffold1800 TRF Tandem_Repeat 138117 138160 88 + . . scaffold1800 TRF Tandem_Repeat 139255 139296 84 + . . scaffold1800 GLEAN mRNA 139913 200118 0.999623 - . ID=CGI_10016401; scaffold1800 TRF Tandem_Repeat 149563 149593 62 + . . scaffold1800 TRF Tandem_Repeat 150973 151228 451 + . . scaffold1800 TRF Tandem_Repeat 150974 151228 186 + . . scaffold1800 TRF Tandem_Repeat 158098 158141 70 + . . scaffold1800 TRF Tandem_Repeat 171746 172027 474 + . . scaffold1800 TRF Tandem_Repeat 171766 172729 299 + . . scaffold1800 TRF Tandem_Repeat 172018 172729 844 + . . scaffold1800 TRF Tandem_Repeat 184707 185604 1090 + . . scaffold1800 GLEAN promoter 200119 201118 0.999623 - . ID=CGI_10016401; scaffold1800 GLEAN mRNA 200183 220309 0.999957 - . ID=CGI_10016402; scaffold1800 TRF Tandem_Repeat 213193 213227 63 + . . scaffold1800 GLEAN promoter 220310 221309 0.999957 - . ID=CGI_10016402; scaffold1800 TRF Tandem_Repeat 220347 220751 101 + . . scaffold1800 TRF Tandem_Repeat 220347 220411 60 + . . scaffold1800 TRF Tandem_Repeat 220446 220591 81 + . . scaffold1800 GLEAN mRNA 221099 227829 0.937789 - . ID=CGI_10016403; scaffold1800 TRF Tandem_Repeat 222158 222259 84 + . . scaffold1800 TRF Tandem_Repeat 222162 222280 81 + . . scaffold1800 TRF Tandem_Repeat 222200 222289 51 + . . scaffold1800 GLEAN promoter 227830 228829 0.937789 - . ID=CGI_10016403; scaffold1800 GLEAN mRNA 251153 263258 0.999949 - . ID=CGI_10016404; scaffold1800 TRF Tandem_Repeat 259705 259851 97 + . . scaffold1800 TRF Tandem_Repeat 261134 261194 106 + . . scaffold1800 WUBlastX LINE_CR1-L2 262189 262302 21 - . . scaffold1800 WUBlastX LINE_CR1 262239 262388 52 - . . scaffold1800 WUBlastX LINE_CR1 262527 262958 140 - . . scaffold1800 WUBlastX LINE_CR1 262647 263030 96 - . . scaffold1800 WUBlastX LINE_CR1 262710 262958 183 - . . scaffold1800 GLEAN promoter 263259 264258 0.999949 - . ID=CGI_10016404; scaffold1800 WUBlastX LINE_RTE-X 278661 279002 34 + . . scaffold1800 GLEAN promoter 290855 291854 0.998954 + . ID=CGI_10016405; scaffold1800 GLEAN mRNA 291855 307401 0.998954 + . ID=CGI_10016405; scaffold1800 GLEAN promoter 308587 309586 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 309533 309925 235 + . . scaffold1800 GLEAN mRNA 309587 323793 0.999996 + . ID=CGI_10016406; scaffold1800 WUBlastX LTR_Gypsy 310110 310313 30 + . . scaffold1800 WUBlastX LTR_Gypsy 310155 312197 1308 + . . scaffold1800 WUBlastX LTR_Gypsy 312187 313521 894 + . . scaffold1800 WUBlastX LTR_Gypsy 312853 313641 76 + . . scaffold1800 TRF Tandem_Repeat 320158 320223 132 + . . scaffold1800 WUBlastX DNA_TcMar-Tc1 340421 340918 318 - . . scaffold1800 WUBlastX DNA_TcMar-Tc1 340421 341017 201 - . . scaffold1800 WUBlastX DNA_TcMar-Tc1 340921 341379 182 - . . scaffold1800 TRF Tandem_Repeat 353824 353969 157 + . . scaffold1800 TRF Tandem_Repeat 354649 355073 228 + . . scaffold1800 TRF Tandem_Repeat 354733 355077 406 + . . scaffold1800 TRF Tandem_Repeat 354736 355073 363 + . . scaffold1800 WUBlastX LTR_Ngaro 356250 356567 126 - . . scaffold1800 WUBlastX LTR_Ngaro 356606 358066 978 - . . scaffold1800 WUBlastX LINE_L1-Tx1 371349 372617 144 + . . scaffold1800 TRF Tandem_Repeat 379985 380088 163 + . . scaffold1800 GLEAN promoter 380867 381866 0.618004 + . ID=CGI_10016407; scaffold1800 GLEAN mRNA 381867 390986 0.618004 + . ID=CGI_10016407; scaffold1800 GLEAN mRNA 395807 400264 0.999735 - . ID=CGI_10016408; scaffold1800 TRF Tandem_Repeat 397473 397810 414 + . . scaffold1800 GLEAN promoter 400265 401264 0.999735 - . ID=CGI_10016408; scaffold1800 GLEAN promoter 402710 403709 1 + . ID=CGI_10016409; scaffold1800 GLEAN mRNA 403710 403919 1 + . ID=CGI_10016409; scaffold1800 GLEAN mRNA 404512 407267 1 - . ID=CGI_10016410; scaffold1800 GLEAN promoter 407268 408267 1 - . ID=CGI_10016410; scaffold1800 GLEAN promoter 412559 413558 0.999999 + . ID=CGI_10016411; scaffold1800 GLEAN mRNA 413559 415229 0.999999 + . ID=CGI_10016411; scaffold1800 GLEAN promoter 426397 427396 0.575449 + . ID=CGI_10016412; scaffold1800 GLEAN mRNA 427397 428686 0.575449 + . ID=CGI_10016412; scaffold1800 GLEAN promoter 433018 434017 0.999676 + . ID=CGI_10016413; scaffold1800 GLEAN mRNA 434018 440044 0.999676 + . ID=CGI_10016413; scaffold1800 TRF Tandem_Repeat 434590 434690 91 + . . scaffold1800 TRF Tandem_Repeat 434590 434690 69 + . . scaffold1800 TRF Tandem_Repeat 434925 434957 66 + . . scaffold1800 TRF Tandem_Repeat 435743 435783 82 + . . scaffold1800 TRF Tandem_Repeat 436018 436127 107 + . . scaffold1800 TRF Tandem_Repeat 439410 439744 546 + . . scaffold1800 TRF Tandem_Repeat 447891 448725 623 + . . scaffold1800 TRF Tandem_Repeat 447891 448725 731 + . . scaffold1800 TRF Tandem_Repeat 449614 449703 180 + . . scaffold1800 TRF Tandem_Repeat 454558 454614 114 + . . scaffold1800 WUBlastX LINE_L2 457281 457745 107 - . . scaffold1800 WUBlastX LINE_CR1-L2 457766 457840 24 - . . scaffold1800 WUBlastX LTR_Ngaro 462300 462368 29 - . . scaffold1800 WUBlastX LTR_Ngaro 462469 462606 35 - . . scaffold1801 GLEAN promoter 2044 3043 0.629869 + . ID=CGI_10004347; scaffold1801 GLEAN mRNA 3044 9651 0.629869 + . ID=CGI_10004347; scaffold1801 TRF Tandem_Repeat 4412 5649 1534 + . . scaffold1801 TRF Tandem_Repeat 6446 6498 88 + . . scaffold1801 TRF Tandem_Repeat 6446 6501 58 + . . scaffold1801 TRF Tandem_Repeat 6446 6501 76 + . . scaffold1801 GLEAN promoter 10015 11014 0.459021 + . ID=CGI_10004348; scaffold1801 GLEAN mRNA 11015 28188 0.459021 + . ID=CGI_10004348; scaffold1801 TRF Tandem_Repeat 19559 19598 62 + . . scaffold1801 TRF Tandem_Repeat 25672 25699 56 + . . scaffold1801 TRF Tandem_Repeat 35882 35948 82 + . . scaffold1801 TRF Tandem_Repeat 37102 37151 75 + . . scaffold1801 TRF Tandem_Repeat 38611 39656 1454 + . . scaffold1801 GLEAN mRNA 49099 66626 0.943215 - . ID=CGI_10004349; scaffold1801 GLEAN promoter 66627 67626 0.943215 - . ID=CGI_10004349; scaffold1801 WUBlastX LTR_Ngaro 70580 71296 137 + . . scaffold1801 WUBlastX LTR_Ngaro 70817 71461 184 + . . scaffold1801 WUBlastX LTR_Ngaro 71409 72203 460 + . . scaffold1801 GLEAN promoter 81920 82919 0.923877 + . ID=CGI_10004350; scaffold1801 GLEAN mRNA 82920 94262 0.923877 + . ID=CGI_10004350; scaffold1801 TRF Tandem_Repeat 93552 93604 106 + . . scaffold1802 GLEAN mRNA 551 6855 0.999996 - . ID=CGI_10007145; scaffold1802 GLEAN promoter 6856 7855 0.999996 - . ID=CGI_10007145; scaffold1802 GLEAN promoter 8045 9044 0.761209 + . ID=CGI_10007146; scaffold1802 GLEAN mRNA 9045 16572 0.761209 + . ID=CGI_10007146; scaffold1802 GLEAN promoter 21481 22480 0.931729 + . ID=CGI_10007147; scaffold1802 GLEAN mRNA 22481 38597 0.931729 + . ID=CGI_10007147; scaffold1802 TRF Tandem_Repeat 22722 22753 57 + . . scaffold1802 TRF Tandem_Repeat 37460 37501 84 + . . scaffold1802 GLEAN promoter 53891 54890 0.641801 + . ID=CGI_10007148; scaffold1802 GLEAN mRNA 54891 59961 0.641801 + . ID=CGI_10007148; scaffold1802 TRF Tandem_Repeat 59959 60758 1255 + . . scaffold1802 TRF Tandem_Repeat 59964 61057 731 + . . scaffold1802 TRF Tandem_Repeat 61349 61379 62 + . . scaffold1802 GLEAN promoter 62516 63515 0.41272 + . ID=CGI_10007149; scaffold1802 GLEAN mRNA 63516 68498 0.41272 + . ID=CGI_10007149; scaffold1802 GLEAN promoter 70908 71907 0.999761 + . ID=CGI_10007150; scaffold1802 GLEAN mRNA 71908 80776 0.999761 + . ID=CGI_10007150; scaffold1802 WUBlastX LINE_RTE-RTE 80256 80393 24 + . . scaffold1802 WUBlastX LINE_L1-Tx1 80609 80707 24 + . . scaffold1802 WUBlastX LINE_RTE-BovB 81175 81942 125 + . . scaffold1802 WUBlastX LINE_RTE-X 81358 81954 369 + . . scaffold1802 WUBlastX LINE_RTE-X 81942 82190 108 + . . scaffold1802 WUBlastX LINE_RTE-X 81957 82250 77 + . . scaffold1802 WUBlastX LINE_RTE-X 81978 82163 142 + . . scaffold1802 WUBlastX LINE_RTE-BovB 81990 82298 31 + . . scaffold1802 WUBlastX LTR_Ngaro 85425 85793 122 + . . scaffold1802 WUBlastX LTR_Ngaro 85795 85968 42 + . . scaffold1802 WUBlastX LTR_Ngaro 85964 86092 31 + . . scaffold1802 WUBlastX LTR_Ngaro 86143 86301 44 + . . scaffold1802 GLEAN promoter 90925 91924 0.999372 + . ID=CGI_10007151; scaffold1802 GLEAN mRNA 91925 92347 0.999372 + . ID=CGI_10007151; scaffold1802 GLEAN promoter 114785 115784 1 + . ID=CGI_10007152; scaffold1802 GLEAN mRNA 115785 118490 1 + . ID=CGI_10007152; scaffold1802 GLEAN promoter 123539 124538 0.965039 + . ID=CGI_10007153; scaffold1802 GLEAN mRNA 124539 124934 0.965039 + . ID=CGI_10007153; scaffold1802 TRF Tandem_Repeat 126993 127035 86 + . . scaffold1802 TRF Tandem_Repeat 134590 134639 100 + . . scaffold1802 TRF Tandem_Repeat 135630 135661 57 + . . scaffold1802 TRF Tandem_Repeat 139416 139476 61 + . . scaffold1802 GLEAN promoter 140124 141123 0.996452 + . ID=CGI_10007154; scaffold1802 GLEAN mRNA 141124 144261 0.996452 + . ID=CGI_10007154; scaffold1802 TRF Tandem_Repeat 142755 142802 96 + . . scaffold1802 GLEAN promoter 147223 148222 0.995531 + . ID=CGI_10007155; scaffold1802 TRF Tandem_Repeat 147243 147299 114 + . . scaffold1802 GLEAN mRNA 148223 148660 0.995531 + . ID=CGI_10007155; scaffold1802 TRF Tandem_Repeat 151182 151231 73 + . . scaffold1802 GLEAN promoter 154924 155923 1 + . ID=CGI_10007156; scaffold1802 GLEAN mRNA 155924 169588 1 + . ID=CGI_10007156; scaffold1802 TRF Tandem_Repeat 158182 158289 128 + . . scaffold1802 TRF Tandem_Repeat 159300 159347 87 + . . scaffold1802 TRF Tandem_Repeat 160873 160921 98 + . . scaffold1802 TRF Tandem_Repeat 169981 170006 52 + . . scaffold1802 TRF Tandem_Repeat 171439 171467 58 + . . scaffold1803 GLEAN promoter 467 1466 0.558395 + . ID=CGI_10014036; scaffold1803 GLEAN mRNA 1467 1637 0.558395 + . ID=CGI_10014036; scaffold1803 GLEAN promoter 3070 4069 0.760367 + . ID=CGI_10014037; scaffold1803 GLEAN mRNA 4070 24470 0.760367 + . ID=CGI_10014037; scaffold1803 TRF Tandem_Repeat 4274 4329 94 + . . scaffold1803 TRF Tandem_Repeat 14343 14379 74 + . . scaffold1803 TRF Tandem_Repeat 16950 16992 86 + . . scaffold1803 TRF Tandem_Repeat 18548 18584 65 + . . scaffold1803 GLEAN mRNA 23919 25410 0.648272 - . ID=CGI_10014038; scaffold1803 GLEAN promoter 25411 26410 0.648272 - . ID=CGI_10014038; scaffold1803 TRF Tandem_Repeat 28535 28597 99 + . . scaffold1803 TRF Tandem_Repeat 28535 28580 74 + . . scaffold1803 GLEAN mRNA 30330 31778 1 - . ID=CGI_10014039; scaffold1803 GLEAN promoter 31779 32778 1 - . ID=CGI_10014039; scaffold1803 GLEAN mRNA 35391 52757 0.995479 - . ID=CGI_10014040; scaffold1803 WUBlastX LINE_RTE-X 36764 37684 194 - . . scaffold1803 TRF Tandem_Repeat 43873 43920 96 + . . scaffold1803 TRF Tandem_Repeat 46618 46660 59 + . . scaffold1803 GLEAN promoter 52758 53757 0.995479 - . ID=CGI_10014040; scaffold1803 GLEAN promoter 54510 55509 1 + . ID=CGI_10014041; scaffold1803 GLEAN mRNA 55510 56523 1 + . ID=CGI_10014041; scaffold1803 GLEAN mRNA 59056 81536 0.971342 - . ID=CGI_10014042; scaffold1803 GLEAN promoter 62405 63404 0.590089 + . ID=CGI_10014043; scaffold1803 GLEAN mRNA 63405 64367 0.590089 + . ID=CGI_10014043; scaffold1803 TRF Tandem_Repeat 73814 73861 89 + . . scaffold1803 GLEAN promoter 81537 82536 0.971342 - . ID=CGI_10014042; scaffold1803 GLEAN promoter 94736 95735 1 + . ID=CGI_10014044; scaffold1803 GLEAN mRNA 95736 101486 1 + . ID=CGI_10014044; scaffold1803 TRF Tandem_Repeat 98866 98968 84 + . . scaffold1803 TRF Tandem_Repeat 110467 110493 54 + . . scaffold1803 GLEAN mRNA 110538 110991 0.999791 - . ID=CGI_10014045; scaffold1803 GLEAN promoter 110992 111991 0.999791 - . ID=CGI_10014045; scaffold1803 GLEAN promoter 113754 114753 0.936911 + . ID=CGI_10014046; scaffold1803 GLEAN mRNA 114754 125054 0.936911 + . ID=CGI_10014046; scaffold1803 GLEAN promoter 127148 128147 0.427868 + . ID=CGI_10014047; scaffold1803 GLEAN mRNA 128148 133365 0.427868 + . ID=CGI_10014047; scaffold1803 TRF Tandem_Repeat 131231 131298 118 + . . scaffold1803 TRF Tandem_Repeat 135439 135494 112 + . . scaffold1803 GLEAN mRNA 137176 139237 1 - . ID=CGI_10014048; scaffold1803 GLEAN promoter 139238 140237 1 - . ID=CGI_10014048; scaffold1803 WUBlastX LINE_L2 140824 141378 107 + . . scaffold1803 GLEAN promoter 145074 146073 0.65071 + . ID=CGI_10014049; scaffold1803 GLEAN mRNA 146074 170980 0.65071 + . ID=CGI_10014049; scaffold1803 TRF Tandem_Repeat 195401 195670 327 + . . scaffold1803 TRF Tandem_Repeat 196472 196533 83 + . . scaffold1803 TRF Tandem_Repeat 196472 196533 58 + . . scaffold1803 TRF Tandem_Repeat 196472 196533 74 + . . scaffold1803 TRF Tandem_Repeat 202570 202614 90 + . . scaffold1803 TRF Tandem_Repeat 203039 203092 108 + . . scaffold1803 TRF Tandem_Repeat 210518 210546 58 + . . scaffold1803 GLEAN mRNA 223598 230209 1 - . ID=CGI_10014050; scaffold1803 GLEAN promoter 230210 231209 1 - . ID=CGI_10014050; scaffold1803 WUBlastX LINE_RTE-X 231262 231579 42 - . . scaffold1803 WUBlastX LINE_RTE-X 231262 231510 81 - . . scaffold1803 WUBlastX LINE_RTE-X 231361 231531 83 - . . scaffold1803 GLEAN promoter 232210 233209 1 + . ID=CGI_10014051; scaffold1803 GLEAN mRNA 233210 248683 1 + . ID=CGI_10014051; scaffold1803 TRF Tandem_Repeat 243886 243939 63 + . . scaffold1803 TRF Tandem_Repeat 243892 243939 69 + . . scaffold1803 GLEAN promoter 251432 252431 0.999676 + . ID=CGI_10014052; scaffold1803 GLEAN mRNA 252432 257203 0.999676 + . ID=CGI_10014052; scaffold1803 GLEAN promoter 258742 259741 0.999663 + . ID=CGI_10014053; scaffold1803 GLEAN mRNA 259742 269129 0.999663 + . ID=CGI_10014053; scaffold1803 GLEAN mRNA 276445 289855 0.999395 - . ID=CGI_10014054; scaffold1803 TRF Tandem_Repeat 280881 280922 84 + . . scaffold1803 GLEAN promoter 289856 290855 0.999395 - . ID=CGI_10014054; scaffold1803 GLEAN mRNA 293203 294806 0.5 - . ID=CGI_10014055; scaffold1803 GLEAN promoter 294807 295806 0.5 - . ID=CGI_10014055; scaffold1803 GLEAN promoter 297511 298510 0.819004 + . ID=CGI_10014056; scaffold1803 GLEAN mRNA 298511 325875 0.819004 + . ID=CGI_10014056; scaffold1803 TRF Tandem_Repeat 302818 302893 131 + . . scaffold1803 TRF Tandem_Repeat 315609 315640 55 + . . scaffold1803 GLEAN promoter 325052 326051 0.52048 + . ID=CGI_10014057; scaffold1803 GLEAN mRNA 326052 335844 0.52048 + . ID=CGI_10014057; scaffold1803 TRF Tandem_Repeat 326934 326965 64 + . . scaffold1803 GLEAN mRNA 341031 352178 0.936276 - . ID=CGI_10014058; scaffold1803 TRF Tandem_Repeat 344543 344673 112 + . . scaffold1803 TRF Tandem_Repeat 344557 344736 124 + . . scaffold1803 TRF Tandem_Repeat 344577 344691 90 + . . scaffold1803 TRF Tandem_Repeat 346974 347079 81 + . . scaffold1803 TRF Tandem_Repeat 349249 349383 98 + . . scaffold1803 TRF Tandem_Repeat 349267 349397 112 + . . scaffold1803 GLEAN promoter 351763 352762 0.777732 + . ID=CGI_10014059; scaffold1803 GLEAN promoter 352179 353178 0.936276 - . ID=CGI_10014058; scaffold1803 GLEAN mRNA 352763 370323 0.777732 + . ID=CGI_10014059; scaffold1803 TRF Tandem_Repeat 357244 357291 55 + . . scaffold1803 TRF Tandem_Repeat 368876 368910 70 + . . scaffold1803 GLEAN promoter 370727 371726 1 + . ID=CGI_10014060; scaffold1803 TRF Tandem_Repeat 371609 371686 156 + . . scaffold1803 GLEAN mRNA 371727 375708 1 + . ID=CGI_10014060; scaffold1803 TRF Tandem_Repeat 381601 381656 94 + . . scaffold1804 TRF Tandem_Repeat 195 384 257 + . . scaffold1804 GLEAN promoter 937 1936 1 + . ID=CGI_10013357; scaffold1804 GLEAN mRNA 1937 7131 1 + . ID=CGI_10013357; scaffold1804 TRF Tandem_Repeat 3465 3505 82 + . . scaffold1804 GLEAN mRNA 7925 23293 0.609746 - . ID=CGI_10013358; scaffold1804 TRF Tandem_Repeat 11140 11402 463 + . . scaffold1804 TRF Tandem_Repeat 12217 12865 953 + . . scaffold1804 GLEAN promoter 16334 17333 0.707102 + . ID=CGI_10013359; scaffold1804 TRF Tandem_Repeat 16366 16493 238 + . . scaffold1804 TRF Tandem_Repeat 16608 16643 63 + . . scaffold1804 GLEAN mRNA 17334 21496 0.707102 + . ID=CGI_10013359; scaffold1804 TRF Tandem_Repeat 20017 20859 972 + . . scaffold1804 GLEAN promoter 23294 24293 0.609746 - . ID=CGI_10013358; scaffold1804 GLEAN promoter 25541 26540 0.618186 + . ID=CGI_10013360; scaffold1804 TRF Tandem_Repeat 25977 26171 273 + . . scaffold1804 GLEAN mRNA 26541 26960 0.618186 + . ID=CGI_10013360; scaffold1804 GLEAN promoter 29273 30272 0.4597 + . ID=CGI_10013361; scaffold1804 GLEAN mRNA 30273 44008 0.4597 + . ID=CGI_10013361; scaffold1804 TRF Tandem_Repeat 46714 46780 71 + . . scaffold1804 TRF Tandem_Repeat 49186 49228 86 + . . scaffold1804 TRF Tandem_Repeat 49387 49441 110 + . . scaffold1804 TRF Tandem_Repeat 49953 50019 71 + . . scaffold1804 GLEAN promoter 58144 59143 0.999925 + . ID=CGI_10013362; scaffold1804 GLEAN mRNA 59144 59542 0.999925 + . ID=CGI_10013362; scaffold1804 GLEAN promoter 65758 66757 0.777728 + . ID=CGI_10013363; scaffold1804 GLEAN mRNA 66758 67813 0.777728 + . ID=CGI_10013363; scaffold1804 GLEAN mRNA 69767 74020 1 - . ID=CGI_10013364; scaffold1804 TRF Tandem_Repeat 71184 71966 817 + . . scaffold1804 TRF Tandem_Repeat 72137 72168 55 + . . scaffold1804 GLEAN promoter 74021 75020 1 - . ID=CGI_10013364; scaffold1804 TRF Tandem_Repeat 74329 74671 488 + . . scaffold1804 GLEAN mRNA 74677 85164 0.999851 - . ID=CGI_10013365; scaffold1804 GLEAN promoter 85165 86164 0.999851 - . ID=CGI_10013365; scaffold1804 TRF Tandem_Repeat 88220 88262 86 + . . scaffold1804 GLEAN mRNA 89374 94254 0.838585 - . ID=CGI_10013366; scaffold1804 GLEAN promoter 94255 95254 0.838585 - . ID=CGI_10013366; scaffold1804 TRF Tandem_Repeat 95338 95388 93 + . . scaffold1804 TRF Tandem_Repeat 100265 100323 118 + . . scaffold1804 TRF Tandem_Repeat 103891 104042 74 + . . scaffold1804 GLEAN mRNA 105122 107049 1 - . ID=CGI_10013367; scaffold1804 TRF Tandem_Repeat 105469 105512 88 + . . scaffold1804 GLEAN promoter 107050 108049 1 - . ID=CGI_10013367; scaffold1804 TRF Tandem_Repeat 107100 107140 73 + . . scaffold1804 TRF Tandem_Repeat 107849 107885 74 + . . scaffold1804 TRF Tandem_Repeat 108285 108548 431 + . . scaffold1804 GLEAN mRNA 109348 116836 0.950499 - . ID=CGI_10013368; scaffold1804 TRF Tandem_Repeat 114806 115012 118 + . . scaffold1804 TRF Tandem_Repeat 114838 115012 93 + . . scaffold1804 GLEAN promoter 116837 117836 0.950499 - . ID=CGI_10013368; scaffold1804 GLEAN promoter 117083 118082 0.593391 + . ID=CGI_10013369; scaffold1804 GLEAN mRNA 118083 120824 0.593391 + . ID=CGI_10013369; scaffold1804 TRF Tandem_Repeat 118835 118901 98 + . . scaffold1804 TRF Tandem_Repeat 118835 118905 79 + . . scaffold1804 GLEAN promoter 120578 121577 0.801136 + . ID=CGI_10013370; scaffold1804 GLEAN mRNA 121578 154921 0.801136 + . ID=CGI_10013370; scaffold1804 TRF Tandem_Repeat 133757 136642 5772 + . . scaffold1804 TRF Tandem_Repeat 138019 138509 657 + . . scaffold1804 TRF Tandem_Repeat 140858 141136 425 + . . scaffold1804 TRF Tandem_Repeat 141170 141385 202 + . . scaffold1804 TRF Tandem_Repeat 150620 150930 536 + . . scaffold1804 TRF Tandem_Repeat 151143 151643 822 + . . scaffold1804 GLEAN promoter 154637 155636 0.999375 + . ID=CGI_10013371; scaffold1804 TRF Tandem_Repeat 155437 155462 52 + . . scaffold1804 GLEAN mRNA 155637 158894 0.999375 + . ID=CGI_10013371; scaffold1804 GLEAN promoter 166649 167648 1 + . ID=CGI_10013372; scaffold1804 GLEAN mRNA 167649 169662 1 + . ID=CGI_10013372; scaffold1804 WUBlastX DNA_NOF 169453 169593 32 + . . scaffold1804 GLEAN mRNA 172889 193458 0.693734 - . ID=CGI_10013373; scaffold1804 TRF Tandem_Repeat 173660 174030 473 + . . scaffold1804 TRF Tandem_Repeat 174062 174669 370 + . . scaffold1804 TRF Tandem_Repeat 174130 174700 963 + . . scaffold1804 TRF Tandem_Repeat 175675 175710 72 + . . scaffold1804 TRF Tandem_Repeat 181799 182112 291 + . . scaffold1804 TRF Tandem_Repeat 183118 183199 157 + . . scaffold1804 TRF Tandem_Repeat 190238 190295 73 + . . scaffold1804 TRF Tandem_Repeat 190238 190289 86 + . . scaffold1804 GLEAN promoter 192730 193729 0.648316 + . ID=CGI_10013374; scaffold1804 GLEAN promoter 193459 194458 0.693734 - . ID=CGI_10013373; scaffold1804 GLEAN mRNA 193730 212178 0.648316 + . ID=CGI_10013374; scaffold1804 TRF Tandem_Repeat 197759 197811 106 + . . scaffold1804 TRF Tandem_Repeat 197973 198013 82 + . . scaffold1804 TRF Tandem_Repeat 201529 201591 126 + . . scaffold1804 TRF Tandem_Repeat 206633 206739 214 + . . scaffold1804 TRF Tandem_Repeat 208961 209007 58 + . . scaffold1804 TRF Tandem_Repeat 208973 209014 66 + . . scaffold1804 GLEAN mRNA 220884 221816 0.651021 - . ID=CGI_10013375; scaffold1804 GLEAN promoter 221817 222816 0.651021 - . ID=CGI_10013375; scaffold1804 TRF Tandem_Repeat 230320 230361 50 + . . scaffold1804 TRF Tandem_Repeat 230533 230687 258 + . . scaffold1804 TRF Tandem_Repeat 231942 231973 55 + . . scaffold1804 TRF Tandem_Repeat 231983 232087 85 + . . scaffold1804 TRF Tandem_Repeat 233269 233373 85 + . . scaffold1804 TRF Tandem_Repeat 233363 233414 59 + . . scaffold1804 TRF Tandem_Repeat 239412 239662 192 + . . scaffold1804 TRF Tandem_Repeat 247899 247950 88 + . . scaffold1804 TRF Tandem_Repeat 255904 255966 126 + . . scaffold1804 GLEAN mRNA 259046 259441 1 - . ID=CGI_10013376; scaffold1804 WUBlastX DNA_PiggyBac 259163 259396 38 - . . scaffold1804 GLEAN promoter 259442 260441 1 - . ID=CGI_10013376; scaffold1804 WUBlastX DNA_PiggyBac 260872 261036 20 - . . scaffold1804 GLEAN mRNA 261267 261497 1 - . ID=CGI_10013377; scaffold1804 GLEAN promoter 261498 262497 1 - . ID=CGI_10013377; scaffold1804 GLEAN mRNA 262593 264556 1 - . ID=CGI_10013378; scaffold1804 GLEAN promoter 264557 265556 1 - . ID=CGI_10013378; scaffold1804 GLEAN mRNA 264972 265280 1 - . ID=CGI_10013379; scaffold1804 GLEAN promoter 265281 266280 1 - . ID=CGI_10013379; scaffold1804 GLEAN mRNA 265858 269260 0.586999 - . ID=CGI_10013380; scaffold1804 GLEAN promoter 269261 270260 0.586999 - . ID=CGI_10013380; scaffold1804 GLEAN mRNA 269742 270131 0.546858 - . ID=CGI_10013381; scaffold1804 GLEAN promoter 270132 271131 0.546858 - . ID=CGI_10013381; scaffold1804 GLEAN mRNA 270400 281587 0.695153 - . ID=CGI_10013382; scaffold1804 GLEAN promoter 279197 280196 0.354697 + . ID=CGI_10013383; scaffold1804 GLEAN mRNA 280197 286439 0.354697 + . ID=CGI_10013383; scaffold1804 GLEAN promoter 281588 282587 0.695153 - . ID=CGI_10013382; scaffold1804 WUBlastX DNA_hAT-Blackja 283542 284006 82 + . . scaffold1804 WUBlastX DNA_hAT-Blackja 285923 286309 93 + . . scaffold1804 GLEAN promoter 294121 295120 1 + . ID=CGI_10013384; scaffold1804 GLEAN mRNA 295121 305600 1 + . ID=CGI_10013384; scaffold1804 TRF Tandem_Repeat 298147 298192 51 + . . scaffold1804 TRF Tandem_Repeat 299776 299833 82 + . . scaffold1804 GLEAN mRNA 307412 315650 0.993584 - . ID=CGI_10013385; scaffold1804 GLEAN promoter 315651 316650 0.993584 - . ID=CGI_10013385; scaffold1804 GLEAN mRNA 317952 325503 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 322505 322829 278 + . . scaffold1804 TRF Tandem_Repeat 322690 322809 83 + . . scaffold1804 TRF Tandem_Repeat 322702 322822 70 + . . scaffold1804 TRF Tandem_Repeat 323071 323611 622 + . . scaffold1804 TRF Tandem_Repeat 323432 323539 74 + . . scaffold1804 TRF Tandem_Repeat 323629 324094 524 + . . scaffold1804 TRF Tandem_Repeat 325093 325140 69 + . . scaffold1804 GLEAN promoter 325504 326503 0.999929 - . ID=CGI_10013386; scaffold1804 TRF Tandem_Repeat 328555 328593 78 + . . scaffold1804 GLEAN promoter 328984 329983 1 + . ID=CGI_10013387; scaffold1804 TRF Tandem_Repeat 329176 329204 58 + . . scaffold1804 GLEAN mRNA 329984 331806 1 + . ID=CGI_10013387; scaffold1804 GLEAN promoter 334074 335073 0.999985 + . ID=CGI_10013388; scaffold1804 GLEAN mRNA 335074 336912 0.999985 + . ID=CGI_10013388; scaffold1804 GLEAN mRNA 337629 350615 0.999939 - . ID=CGI_10013389; scaffold1804 TRF Tandem_Repeat 347437 347469 57 + . . scaffold1804 TRF Tandem_Repeat 347477 347515 78 + . . scaffold1804 GLEAN promoter 350616 351615 0.999939 - . ID=CGI_10013389; scaffold1805 GLEAN promoter 614 1613 0.949777 + . ID=CGI_10012437; scaffold1805 GLEAN mRNA 1614 15125 0.949777 + . ID=CGI_10012437; scaffold1805 GLEAN mRNA 10573 10797 0.618241 - . ID=CGI_10012438; scaffold1805 GLEAN promoter 10798 11797 0.618241 - . ID=CGI_10012438; scaffold1805 TRF Tandem_Repeat 13045 13089 81 + . . scaffold1805 WUBlastX LINE_L1 26529 27269 33 + . . scaffold1805 GLEAN promoter 26554 27553 0.426062 + . ID=CGI_10012439; scaffold1805 WUBlastX LINE_L2 26691 27407 78 + . . scaffold1805 GLEAN mRNA 27554 27799 0.426062 + . ID=CGI_10012439; scaffold1805 WUBlastX LINE_L1 28813 28866 36 + . . scaffold1805 WUBlastX LINE_L1-Tx1 28860 29129 103 + . . scaffold1805 WUBlastX LINE_L1-Tx1 28860 29180 89 + . . scaffold1805 WUBlastX LINE_L1-Tx1 28863 29240 27 + . . scaffold1805 GLEAN promoter 38574 39573 0.531577 + . ID=CGI_10012440; scaffold1805 GLEAN mRNA 39574 40911 0.531577 + . ID=CGI_10012440; scaffold1805 TRF Tandem_Repeat 42346 42371 52 + . . scaffold1805 WUBlastX LINE_Penelope 45102 45545 141 + . . scaffold1805 WUBlastX LINE_CR1 46299 46793 83 + . . scaffold1805 WUBlastX LINE_CR1 46404 46976 178 + . . scaffold1805 WUBlastX LINE_CR1 46796 47329 262 + . . scaffold1805 WUBlastX LINE_CR1-L2 46883 47413 107 + . . scaffold1805 WUBlastX LINE_CR1 47352 47567 33 + . . scaffold1805 WUBlastX LINE_CR1 47528 48124 258 + . . scaffold1805 WUBlastX LINE_CR1 47639 48130 308 + . . scaffold1805 WUBlastX LINE_RTE-X 50059 50400 94 + . . scaffold1805 WUBlastX LINE_RTE-X 50062 50460 26 + . . scaffold1805 WUBlastX LINE_RTE-X 50405 50515 22 + . . scaffold1805 TRF Tandem_Repeat 50813 50905 68 + . . scaffold1805 TRF Tandem_Repeat 51534 51590 114 + . . scaffold1805 GLEAN promoter 57167 58166 0.950142 + . ID=CGI_10012441; scaffold1805 GLEAN mRNA 58167 58502 0.950142 + . ID=CGI_10012441; scaffold1805 WUBlastX LTR_DIRS 59222 59893 137 + . . scaffold1805 WUBlastX LTR_DIRS 60018 60182 72 + . . scaffold1805 WUBlastX LTR_Gypsy 62677 63507 193 + . . scaffold1805 WUBlastX LTR_Gypsy 63543 63731 40 + . . scaffold1805 WUBlastX LTR_Gypsy 63573 66704 1729 + . . scaffold1805 WUBlastX LTR_Gypsy 67465 67533 26 + . . scaffold1805 TRF Tandem_Repeat 69030 69061 55 + . . scaffold1805 TRF Tandem_Repeat 75537 75793 433 + . . scaffold1805 TRF Tandem_Repeat 79902 79934 66 + . . scaffold1805 GLEAN mRNA 85152 86645 0.990832 - . ID=CGI_10012442; scaffold1805 GLEAN promoter 86646 87645 0.990832 - . ID=CGI_10012442; scaffold1805 WUBlastX LTR_Gypsy 98857 99288 41 - . . scaffold1805 TRF Tandem_Repeat 103563 103639 145 + . . scaffold1805 TRF Tandem_Repeat 107010 107067 82 + . . scaffold1805 GLEAN promoter 127290 128289 0.593344 + . ID=CGI_10012443; scaffold1805 GLEAN mRNA 128290 156407 0.593344 + . ID=CGI_10012443; scaffold1805 TRF Tandem_Repeat 141246 141496 259 + . . scaffold1805 TRF Tandem_Repeat 143152 143183 55 + . . scaffold1805 TRF Tandem_Repeat 147708 147931 335 + . . scaffold1805 TRF Tandem_Repeat 163192 163231 53 + . . scaffold1805 TRF Tandem_Repeat 163231 163274 70 + . . scaffold1805 WUBlastX LINE_L1-Tx1 165591 165941 53 + . . scaffold1805 WUBlastX LINE_L1 165657 166232 71 + . . scaffold1805 WUBlastX LINE_L1 166223 166435 27 + . . scaffold1805 WUBlastX LINE_RTE-X 172764 172895 27 + . . scaffold1805 WUBlastX LINE_RTE-X 173633 173695 49 + . . scaffold1805 WUBlastX LINE_RTE-X 173721 174260 65 + . . scaffold1805 WUBlastX LINE_RTE-X 173901 174278 83 + . . scaffold1805 WUBlastX LINE_CR1 173970 174341 22 + . . scaffold1805 WUBlastX LINE_RTE-X 174479 174535 22 + . . scaffold1805 WUBlastX DNA_TcMar-Tc1 180587 180706 36 - . . scaffold1805 WUBlastX DNA_TcMar-Tc1 180657 180980 119 - . . scaffold1805 WUBlastX DNA_TcMar-Tc1 180666 181064 83 - . . scaffold1805 WUBlastX DNA_TcMar-Tc1 180989 181369 74 - . . scaffold1805 WUBlastX DNA_TcMar-Tc1 181142 181432 59 - . . scaffold1805 TRF Tandem_Repeat 186299 186332 68 + . . scaffold1805 GLEAN promoter 187325 188324 0.999673 + . ID=CGI_10012444; scaffold1805 GLEAN mRNA 188325 198272 0.999673 + . ID=CGI_10012444; scaffold1805 GLEAN mRNA 198538 200532 0.996466 - . ID=CGI_10012445; scaffold1805 GLEAN promoter 200533 201532 0.996466 - . ID=CGI_10012445; scaffold1805 TRF Tandem_Repeat 242160 242217 116 + . . scaffold1805 TRF Tandem_Repeat 244187 244244 116 + . . scaffold1805 GLEAN promoter 252323 253322 0.83621 + . ID=CGI_10012446; scaffold1805 GLEAN mRNA 253323 255404 0.83621 + . ID=CGI_10012446; scaffold1805 GLEAN mRNA 255030 268289 0.472749 - . ID=CGI_10012447; scaffold1805 TRF Tandem_Repeat 257236 257559 551 + . . scaffold1805 TRF Tandem_Repeat 264219 264659 503 + . . scaffold1805 GLEAN promoter 268290 269289 0.472749 - . ID=CGI_10012447; scaffold1805 GLEAN mRNA 269475 270608 0.836134 - . ID=CGI_10012448; scaffold1805 GLEAN promoter 270609 271608 0.836134 - . ID=CGI_10012448; scaffold1805 TRF Tandem_Repeat 273196 273263 75 + . . scaffold1805 TRF Tandem_Repeat 273197 273272 73 + . . scaffold1805 TRF Tandem_Repeat 273205 273272 84 + . . scaffold1805 GLEAN promoter 282512 283511 0.99428 + . ID=CGI_10012449; scaffold1805 GLEAN mRNA 283512 287727 0.99428 + . ID=CGI_10012449; scaffold1805 TRF Tandem_Repeat 286530 286563 68 + . . scaffold1805 TRF Tandem_Repeat 293892 293931 80 + . . scaffold1805 TRF Tandem_Repeat 296959 297017 118 + . . scaffold1805 GLEAN mRNA 298624 299670 0.894393 - . ID=CGI_10012450; scaffold1805 GLEAN promoter 299671 300670 0.894393 - . ID=CGI_10012450; scaffold1805 GLEAN promoter 301900 302899 0.999661 + . ID=CGI_10012451; scaffold1805 GLEAN mRNA 302900 304564 0.999661 + . ID=CGI_10012451; scaffold1805 GLEAN mRNA 308367 315509 0.447179 - . ID=CGI_10012452; scaffold1805 TRF Tandem_Repeat 315028 315132 174 + . . scaffold1805 GLEAN promoter 315510 316509 0.447179 - . ID=CGI_10012452; scaffold1805 WUBlastX LINE_L1 315804 315980 72 - . . scaffold1805 GLEAN promoter 320972 321971 0.999661 + . ID=CGI_10012453; scaffold1805 GLEAN mRNA 321972 323636 0.999661 + . ID=CGI_10012453; scaffold1805 GLEAN mRNA 325138 326477 1 - . ID=CGI_10012454; scaffold1805 GLEAN promoter 326478 326567 1 - . ID=CGI_10012454; scaffold1806 GLEAN mRNA 7359 10051 0.738373 - . ID=CGI_10006153; scaffold1806 TRF Tandem_Repeat 9623 9661 64 + . . scaffold1806 GLEAN promoter 10052 11051 0.738373 - . ID=CGI_10006153; scaffold1806 GLEAN promoter 11642 12641 0.921324 + . ID=CGI_10006154; scaffold1806 GLEAN mRNA 12642 18200 0.921324 + . ID=CGI_10006154; scaffold1806 TRF Tandem_Repeat 13701 13734 68 + . . scaffold1806 TRF Tandem_Repeat 17059 17455 340 + . . scaffold1806 TRF Tandem_Repeat 17059 17455 378 + . . scaffold1806 GLEAN promoter 19239 20238 0.675076 + . ID=CGI_10006155; scaffold1806 GLEAN mRNA 20239 35559 0.675076 + . ID=CGI_10006155; scaffold1806 TRF Tandem_Repeat 23698 23736 53 + . . scaffold1806 TRF Tandem_Repeat 26623 26673 102 + . . scaffold1806 TRF Tandem_Repeat 34721 35031 378 + . . scaffold1806 WUBlastX DNA_MuDR 38339 38791 35 + . . scaffold1806 WUBlastX DNA_NOF? 39353 39880 22 + . . scaffold1806 WUBlastX DNA_NOF 39362 39760 31 + . . scaffold1806 TRF Tandem_Repeat 40429 41520 1639 + . . scaffold1806 TRF Tandem_Repeat 41725 41755 53 + . . scaffold1806 GLEAN promoter 44331 45330 0.994674 + . ID=CGI_10006156; scaffold1806 GLEAN mRNA 45331 76950 0.994674 + . ID=CGI_10006156; scaffold1806 WUBlastX LTR_Gypsy 53072 54319 207 - . . scaffold1806 WUBlastX LTR_Gypsy 53261 56743 2768 - . . scaffold1806 WUBlastX LTR_Gypsy 55439 57166 954 - . . scaffold1806 TRF Tandem_Repeat 57726 57817 175 + . . scaffold1806 TRF Tandem_Repeat 66350 66391 50 + . . scaffold1806 GLEAN mRNA 70668 89122 0.54485 - . ID=CGI_10006158; scaffold1806 WUBlastX LTR_Gypsy 84280 84666 117 - . . scaffold1806 WUBlastX LTR_Gypsy 84394 84693 160 - . . scaffold1806 WUBlastX LTR_Gypsy 84650 85675 575 - . . scaffold1806 WUBlastX LTR_Gypsy 84665 86323 474 - . . scaffold1806 WUBlastX LTR_Gypsy 84677 86050 509 - . . scaffold1806 WUBlastX LTR_Gypsy 86256 87182 201 - . . scaffold1806 WUBlastX LTR_Gypsy 86367 87068 287 - . . scaffold1806 WUBlastX LINE_Penelope 88937 89194 21 + . . scaffold1806 GLEAN promoter 89123 90122 0.54485 - . ID=CGI_10006158; scaffold1806 TRF Tandem_Repeat 91400 91502 91 + . . scaffold1806 TRF Tandem_Repeat 91598 91721 117 + . . scaffold1806 TRF Tandem_Repeat 97986 98027 68 + . . scaffold1806 TRF Tandem_Repeat 97987 98024 51 + . . scaffold1806 WUBlastX LINE_RTE-BovB 130394 131401 856 - . . scaffold1806 WUBlastX LINE_L1 131684 131728 23 - . . scaffold1806 TRF Tandem_Repeat 137975 138015 82 + . . scaffold1806 WUBlastX RC_Helitron 143158 143928 57 + . . scaffold1806 WUBlastX RC_Helitron 144058 144783 286 + . . scaffold1807 GLEAN promoter 669 1668 0.999992 + . ID=CGI_10004643; scaffold1807 GLEAN mRNA 1669 20856 0.999992 + . ID=CGI_10004643; scaffold1807 TRF Tandem_Repeat 15949 15990 50 + . . scaffold1807 GLEAN mRNA 37010 47983 0.990974 - . ID=CGI_10004644; scaffold1807 TRF Tandem_Repeat 43278 43343 55 + . . scaffold1807 WUBlastX LTR_DIRS 44531 45811 106 + . . scaffold1807 WUBlastX LTR_DIRS 45808 46053 92 + . . scaffold1807 WUBlastX LTR_DIRS 46056 46349 51 + . . scaffold1807 WUBlastX LTR_DIRS 46900 47235 97 + . . scaffold1807 GLEAN promoter 47984 48983 0.990974 - . ID=CGI_10004644; scaffold1807 TRF Tandem_Repeat 51033 51703 758 + . . scaffold1807 TRF Tandem_Repeat 88412 88485 118 + . . scaffold1807 TRF Tandem_Repeat 92678 92724 78 + . . scaffold1807 TRF Tandem_Repeat 98612 99958 1529 + . . scaffold1807 GLEAN mRNA 102885 106465 1 - . ID=CGI_10004645; scaffold1807 GLEAN promoter 106466 106822 1 - . ID=CGI_10004645; scaffold1808 GLEAN promoter 603 1602 0.998274 + . ID=CGI_10008025; scaffold1808 GLEAN mRNA 1603 2616 0.998274 + . ID=CGI_10008025; scaffold1808 TRF Tandem_Repeat 3104 3143 71 + . . scaffold1808 TRF Tandem_Repeat 3905 3952 87 + . . scaffold1808 GLEAN promoter 7086 8085 0.999995 + . ID=CGI_10008026; scaffold1808 TRF Tandem_Repeat 7425 7454 60 + . . scaffold1808 GLEAN mRNA 8086 22009 0.999995 + . ID=CGI_10008026; scaffold1808 TRF Tandem_Repeat 13996 14074 151 + . . scaffold1808 TRF Tandem_Repeat 17522 17586 130 + . . scaffold1808 GLEAN mRNA 23870 25100 0.999997 - . ID=CGI_10008027; scaffold1808 GLEAN promoter 25101 26100 0.999997 - . ID=CGI_10008027; scaffold1808 TRF Tandem_Repeat 25519 25594 116 + . . scaffold1808 TRF Tandem_Repeat 28315 28920 1011 + . . scaffold1808 WUBlastX DNA_Maverick 30293 31372 685 - . . scaffold1808 TRF Tandem_Repeat 33118 33166 98 + . . scaffold1808 TRF Tandem_Repeat 45639 45672 50 + . . scaffold1808 WUBlastX DNA_IS4EU 46606 46707 30 + . . scaffold1808 WUBlastX DNA_IS4EU 47988 48071 33 + . . scaffold1808 WUBlastX DNA_Kolobok-IS4 47988 48101 30 + . . scaffold1808 WUBlastX DNA_IS4EU 48225 48404 70 + . . scaffold1808 TRF Tandem_Repeat 52535 52565 53 + . . scaffold1808 TRF Tandem_Repeat 52577 53228 926 + . . scaffold1808 TRF Tandem_Repeat 56070 56112 59 + . . scaffold1808 TRF Tandem_Repeat 57446 57472 54 + . . scaffold1808 TRF Tandem_Repeat 62651 62708 64 + . . scaffold1808 TRF Tandem_Repeat 64159 64902 1081 + . . scaffold1808 WUBlastX DNA_hAT-hATw 68200 69996 1088 + . . scaffold1808 GLEAN promoter 73624 74623 0.508789 + . ID=CGI_10008028; scaffold1808 GLEAN mRNA 74624 74974 0.508789 + . ID=CGI_10008028; scaffold1808 GLEAN mRNA 75672 81162 0.947424 - . ID=CGI_10008029; scaffold1808 TRF Tandem_Repeat 78245 78282 51 + . . scaffold1808 GLEAN promoter 81163 82162 0.947424 - . ID=CGI_10008029; scaffold1808 WUBlastX DNA_TcMar-Fot1 83135 83500 45 + . . scaffold1808 WUBlastX DNA_TcMar-Fot1 83282 83701 90 + . . scaffold1808 WUBlastX DNA_TcMar-Tc2 83700 83885 56 + . . scaffold1808 WUBlastX DNA_TcMar-Tc2 83712 83849 68 + . . scaffold1808 WUBlastX DNA_TcMar-Tc2 83715 84023 49 + . . scaffold1808 GLEAN promoter 109431 110430 0.574175 + . ID=CGI_10008030; scaffold1808 GLEAN mRNA 110431 132703 0.574175 + . ID=CGI_10008030; scaffold1808 WUBlastX LINE_CR1-L2 114813 115403 24 + . . scaffold1808 TRF Tandem_Repeat 120548 120594 85 + . . scaffold1808 TRF Tandem_Repeat 131304 131363 111 + . . scaffold1808 TRF Tandem_Repeat 131367 131478 89 + . . scaffold1808 TRF Tandem_Repeat 131385 131478 107 + . . scaffold1808 GLEAN promoter 135787 136786 1 + . ID=CGI_10008031; scaffold1808 GLEAN mRNA 136787 137128 1 + . ID=CGI_10008031; scaffold1808 WUBlastX DNA_Kolobok-IS4 136802 137083 71 + . . scaffold1808 WUBlastX DNA_Kolobok-IS4 137936 138853 448 + . . scaffold1808 WUBlastX DNA_IS4EU 139732 140874 198 - . . scaffold1808 WUBlastX DNA_IS4EU 141047 141562 91 - . . scaffold1808 WUBlastX LINE_RTE-BovB 146187 146279 52 + . . scaffold1808 WUBlastX LINE_L2 148833 149387 77 - . . scaffold1808 WUBlastX LINE_RTE-X 148887 149201 79 - . . scaffold1808 WUBlastX LTR_Ngaro 149443 150381 342 - . . scaffold1808 WUBlastX LTR_Ngaro 150318 151904 1011 - . . scaffold1808 WUBlastX LTR_Ngaro 150327 152192 630 - . . scaffold1808 WUBlastX LTR_Ngaro 152173 152616 228 - . . scaffold1808 WUBlastX LTR_Ngaro 152197 153039 94 - . . scaffold1808 WUBlastX LTR_Gypsy 157449 158036 51 + . . scaffold1808 WUBlastX LTR_Gypsy 157467 157643 60 + . . scaffold1808 WUBlastX LTR_Gypsy 157717 157938 56 + . . scaffold1808 WUBlastX LTR_Gypsy 157956 158216 24 + . . scaffold1808 GLEAN promoter 159388 160387 1 + . ID=CGI_10008033; scaffold1808 GLEAN mRNA 160388 163239 1 + . ID=CGI_10008033; scaffold1808 TRF Tandem_Repeat 162275 162360 172 + . . scaffold181 GLEAN mRNA 199 3147 0.937844 - . ID=CGI_10003022; scaffold181 GLEAN promoter 3148 4147 0.937844 - . ID=CGI_10003022; scaffold181 WUBlastX LINE_RTE-X 11076 11303 136 - . . scaffold181 WUBlastX LINE_L1-Tx1 11085 11342 70 - . . scaffold181 GLEAN promoter 22184 23183 0.999547 + . ID=CGI_10003023; scaffold181 GLEAN mRNA 23184 28128 0.999547 + . ID=CGI_10003023; scaffold181 WUBlastX LINE_CR1-L2 26565 26720 54 + . . scaffold1810 WUBlastX LTR_DIRS 4523 4723 68 + . . scaffold1810 WUBlastX LTR_DIRS 4565 4726 104 + . . scaffold1810 WUBlastX LTR_DIRS 4761 5024 206 + . . scaffold1810 WUBlastX LTR_DIRS 5972 6553 232 + . . scaffold1810 WUBlastX LTR_DIRS 6020 6508 260 + . . scaffold1810 GLEAN promoter 6368 7367 0.979898 + . ID=CGI_10007553; scaffold1810 WUBlastX LTR_DIRS 6580 6774 102 + . . scaffold1810 GLEAN mRNA 7368 11444 0.979898 + . ID=CGI_10007553; scaffold1810 WUBlastX DNA_Sola 7444 7536 20 + . . scaffold1810 WUBlastX DNA_Sola 8123 8248 86 + . . scaffold1810 GLEAN mRNA 13680 13841 1 - . ID=CGI_10007554; scaffold1810 WUBlastX DNA_Harbinger 13683 13898 65 - . . scaffold1810 GLEAN promoter 13842 14841 1 - . ID=CGI_10007554; scaffold1810 WUBlastX DNA_Harbinger 14027 14311 240 - . . scaffold1810 GLEAN mRNA 19672 24587 0.837152 - . ID=CGI_10007555; scaffold1810 TRF Tandem_Repeat 21543 21630 115 + . . scaffold1810 GLEAN promoter 24588 25587 0.837152 - . ID=CGI_10007555; scaffold1810 GLEAN promoter 27274 28273 0.667672 + . ID=CGI_10007556; scaffold1810 GLEAN mRNA 28274 31828 0.667672 + . ID=CGI_10007556; scaffold1810 TRF Tandem_Repeat 30983 31146 89 + . . scaffold1810 GLEAN promoter 34071 35070 0.59015 + . ID=CGI_10007557; scaffold1810 GLEAN mRNA 35071 35736 0.59015 + . ID=CGI_10007557; scaffold1810 WUBlastX LINE_Proto2 35404 35715 88 + . . scaffold1810 WUBlastX LINE_Proto2 35774 36853 93 + . . scaffold1810 WUBlastX LINE_L2 41672 41845 65 + . . scaffold1810 TRF Tandem_Repeat 43056 43089 59 + . . scaffold1810 WUBlastX LTR_Ngaro 47407 47895 89 + . . scaffold1810 WUBlastX LTR_Ngaro 48181 48459 77 + . . scaffold1810 WUBlastX LTR_Ngaro 48395 48856 331 + . . scaffold1810 WUBlastX LTR_Ngaro 48859 49191 149 + . . scaffold1810 WUBlastX LTR_Ngaro 49210 49683 185 + . . scaffold1810 WUBlastX LTR_DIRS 49741 49842 24 + . . scaffold1810 TRF Tandem_Repeat 57328 57362 63 + . . scaffold1810 TRF Tandem_Repeat 57365 57391 54 + . . scaffold1810 TRF Tandem_Repeat 57393 57420 56 + . . scaffold1810 GLEAN promoter 66505 67504 0.893433 + . ID=CGI_10007558; scaffold1810 GLEAN mRNA 67505 74523 0.893433 + . ID=CGI_10007558; scaffold1810 TRF Tandem_Repeat 73614 73847 161 + . . scaffold1810 TRF Tandem_Repeat 73668 73971 179 + . . scaffold1810 TRF Tandem_Repeat 75223 75276 108 + . . scaffold1810 GLEAN mRNA 76519 89052 0.998976 - . ID=CGI_10007559; scaffold1810 GLEAN promoter 89053 90052 0.998976 - . ID=CGI_10007559; scaffold1810 TRF Tandem_Repeat 89424 89469 92 + . . scaffold1810 WUBlastX LINE_L1-Tx1 111357 111956 242 - . . scaffold1810 WUBlastX LINE_L1-Tx1 111540 112058 57 - . . scaffold1810 TRF Tandem_Repeat 133812 134277 701 + . . scaffold1810 GLEAN promoter 138200 139199 1 + . ID=CGI_10007560; scaffold1810 GLEAN mRNA 139200 157072 1 + . ID=CGI_10007560; scaffold1810 TRF Tandem_Repeat 144911 145747 977 + . . scaffold1810 GLEAN mRNA 164096 166749 0.999902 - . ID=CGI_10007561; scaffold1810 GLEAN promoter 166588 167587 1 + . ID=CGI_10007562; scaffold1810 GLEAN promoter 166750 167749 0.999902 - . ID=CGI_10007561; scaffold1810 GLEAN mRNA 167588 177695 1 + . ID=CGI_10007562; scaffold1810 GLEAN mRNA 180381 184153 1 - . ID=CGI_10007563; scaffold1810 GLEAN promoter 184154 184394 1 - . ID=CGI_10007563; scaffold1811 TRF Tandem_Repeat 4105 4130 52 + . . scaffold1811 TRF Tandem_Repeat 33885 33933 84 + . . scaffold1811 TRF Tandem_Repeat 35996 36042 51 + . . scaffold1811 TRF Tandem_Repeat 43589 44358 1071 + . . scaffold1811 TRF Tandem_Repeat 48019 48071 61 + . . scaffold1811 TRF Tandem_Repeat 48136 48189 90 + . . scaffold1811 TRF Tandem_Repeat 49517 49558 57 + . . scaffold1811 TRF Tandem_Repeat 49947 49997 57 + . . scaffold1811 TRF Tandem_Repeat 53267 53336 124 + . . scaffold1811 TRF Tandem_Repeat 56624 56721 106 + . . scaffold1811 TRF Tandem_Repeat 58624 58684 122 + . . scaffold1811 WUBlastX DNA_IS4EU 64196 64495 29 + . . scaffold1811 WUBlastX DNA_IS4EU 65295 66002 198 + . . scaffold1811 GLEAN mRNA 66417 67040 1 - . ID=CGI_10004796; scaffold1811 WUBlastX DNA_Kolobok-IS4 66420 67295 445 - . . scaffold1811 GLEAN promoter 67041 68040 1 - . ID=CGI_10004796; scaffold1811 WUBlastX DNA_IS4EU 68322 68666 53 - . . scaffold1811 TRF Tandem_Repeat 78628 78669 57 + . . scaffold1811 TRF Tandem_Repeat 78821 81158 2204 + . . scaffold1811 TRF Tandem_Repeat 78821 81158 2310 + . . scaffold1811 TRF Tandem_Repeat 78821 81158 2344 + . . scaffold1811 GLEAN promoter 91998 92997 0.965913 + . ID=CGI_10004797; scaffold1811 GLEAN mRNA 92998 93690 0.965913 + . ID=CGI_10004797; scaffold1811 TRF Tandem_Repeat 97622 97848 219 + . . scaffold1811 TRF Tandem_Repeat 97622 97848 213 + . . scaffold1811 TRF Tandem_Repeat 98238 98266 58 + . . scaffold1811 WUBlastX LINE_RTE-X 98774 98863 48 - . . scaffold1811 WUBlastX LINE_L2 99172 99459 59 + . . scaffold1811 WUBlastX LINE_L2 99172 99378 66 + . . scaffold1811 TRF Tandem_Repeat 99477 99550 94 + . . scaffold1811 TRF Tandem_Repeat 99478 99551 87 + . . scaffold1811 WUBlastX LINE_RTE-X 99673 99780 34 - . . scaffold1811 WUBlastX LINE_RTE-X 99691 99831 27 - . . scaffold1811 WUBlastX LINE_RTE-X 99691 99780 47 - . . scaffold1811 WUBlastX LINE_RTE-X 100446 100643 33 - . . scaffold1811 WUBlastX LINE_RTE-X 100485 100643 76 - . . scaffold1811 TRF Tandem_Repeat 100975 101074 60 + . . scaffold1811 WUBlastX LINE_RTE-X 101088 101351 79 - . . scaffold1811 WUBlastX LINE_RTE-X 101136 101351 90 - . . scaffold1811 TRF Tandem_Repeat 102081 102135 65 + . . scaffold1811 TRF Tandem_Repeat 102306 104426 2476 + . . scaffold1811 TRF Tandem_Repeat 102306 104394 2583 + . . scaffold1811 TRF Tandem_Repeat 102306 104426 2372 + . . scaffold1811 TRF Tandem_Repeat 106005 106277 384 + . . scaffold1812 WUBlastX LTR_Gypsy 6 452 277 + . . scaffold1812 WUBlastX LTR_Gypsy 6 533 187 + . . scaffold1812 GLEAN mRNA 18505 39381 0.997673 - . ID=CGI_10004688; scaffold1812 TRF Tandem_Repeat 31454 31563 114 + . . scaffold1812 WUBlastX LINE_L2 32068 32415 22 + . . scaffold1812 WUBlastX LINE_RTE-X 37326 37481 38 - . . scaffold1812 WUBlastX LINE_RTE-X 37488 37598 62 - . . scaffold1812 GLEAN promoter 39382 40381 0.997673 - . ID=CGI_10004688; scaffold1812 WUBlastX LINE_L1 39409 39927 81 - . . scaffold1812 GLEAN promoter 39619 40618 0.999676 + . ID=CGI_10004689; scaffold1812 GLEAN mRNA 40619 48469 0.999676 + . ID=CGI_10004689; scaffold1812 TRF Tandem_Repeat 50836 50876 82 + . . scaffold1812 WUBlastX LINE_L1-Tx1 61272 61643 72 - . . scaffold1812 GLEAN promoter 66852 67851 0.999994 + . ID=CGI_10004690; scaffold1812 GLEAN mRNA 67852 76731 0.999994 + . ID=CGI_10004690; scaffold1812 TRF Tandem_Repeat 69509 69542 50 + . . scaffold1812 TRF Tandem_Repeat 72376 72446 117 + . . scaffold1812 TRF Tandem_Repeat 72377 72446 97 + . . scaffold1812 TRF Tandem_Repeat 103280 103322 86 + . . scaffold1812 TRF Tandem_Repeat 107387 107419 66 + . . scaffold1813 GLEAN promoter 1 230 0.869721 + . ID=CGI_10005987; scaffold1813 GLEAN mRNA 231 13188 0.869721 + . ID=CGI_10005987; scaffold1813 TRF Tandem_Repeat 10963 11013 102 + . . scaffold1813 TRF Tandem_Repeat 15106 15176 142 + . . scaffold1813 GLEAN promoter 17046 18045 0.392215 + . ID=CGI_10005988; scaffold1813 GLEAN mRNA 18046 28556 0.392215 + . ID=CGI_10005988; scaffold1813 TRF Tandem_Repeat 18318 18470 200 + . . scaffold1813 TRF Tandem_Repeat 20718 20753 63 + . . scaffold1813 GLEAN mRNA 24713 26823 0.990432 - . ID=CGI_10005989; scaffold1813 GLEAN promoter 26824 27823 0.990432 - . ID=CGI_10005989; scaffold1813 TRF Tandem_Repeat 29184 29233 100 + . . scaffold1813 WUBlastX LINE_L1-Tx1 29379 29555 21 - . . scaffold1813 WUBlastX LINE_L1-Tx1 29630 30199 95 - . . scaffold1813 WUBlastX LINE_L1-Tx1 29636 29857 96 - . . scaffold1813 WUBlastX LINE_L1 30369 30515 20 - . . scaffold1813 WUBlastX LINE_L1 32565 33176 26 + . . scaffold1813 TRF Tandem_Repeat 35652 35715 128 + . . scaffold1813 TRF Tandem_Repeat 36315 36380 69 + . . scaffold1813 TRF Tandem_Repeat 36399 36459 72 + . . scaffold1813 TRF Tandem_Repeat 36399 36460 70 + . . scaffold1813 GLEAN promoter 38463 39462 0.702385 + . ID=CGI_10005990; scaffold1813 GLEAN mRNA 39463 41634 0.702385 + . ID=CGI_10005990; scaffold1813 WUBlastX LINE_L1 39487 40065 42 + . . scaffold1813 TRF Tandem_Repeat 40869 40941 101 + . . scaffold1813 TRF Tandem_Repeat 41352 41464 174 + . . scaffold1813 WUBlastX LINE_RTE-BovB 41790 42020 80 - . . scaffold1813 WUBlastX DNA_TcMar-Marin 43268 43423 54 - . . scaffold1813 WUBlastX DNA_TcMar-Marin 43310 43480 26 - . . scaffold1813 WUBlastX DNA_TcMar-Marin 43523 43645 22 - . . scaffold1813 WUBlastX DNA_TcMar-Marin 43636 43749 32 - . . scaffold1813 GLEAN promoter 46495 47494 0.59015 + . ID=CGI_10005991; scaffold1813 GLEAN mRNA 47495 48433 0.59015 + . ID=CGI_10005991; scaffold1813 TRF Tandem_Repeat 53423 53463 82 + . . scaffold1813 TRF Tandem_Repeat 57225 57268 70 + . . scaffold1813 TRF Tandem_Repeat 57843 58329 790 + . . scaffold1813 TRF Tandem_Repeat 57843 58329 832 + . . scaffold1813 GLEAN mRNA 59020 60684 0.999676 - . ID=CGI_10005993; scaffold1813 GLEAN promoter 60685 61684 0.999676 - . ID=CGI_10005993; scaffold1813 TRF Tandem_Repeat 62043 62107 69 + . . scaffold1813 TRF Tandem_Repeat 62043 62098 67 + . . scaffold1813 TRF Tandem_Repeat 68978 69003 52 + . . scaffold1813 TRF Tandem_Repeat 72097 72222 58 + . . scaffold1813 TRF Tandem_Repeat 72112 72240 158 + . . scaffold1813 WUBlastX LINE_L1-Tx1 77872 78195 42 + . . scaffold1813 GLEAN promoter 105186 106185 0.957305 + . ID=CGI_10005994; scaffold1813 GLEAN mRNA 106186 113865 0.957305 + . ID=CGI_10005994; scaffold1813 WUBlastX LINE_RTE-X 112669 113073 27 - . . scaffold1813 WUBlastX LINE_RTE-X 112714 113055 60 - . . scaffold1813 WUBlastX LINE_RTE-X 113159 113311 22 - . . scaffold1813 WUBlastX LINE_RTE-X 113201 113461 27 - . . scaffold1813 WUBlastX LINE_RTE-X 113251 113511 28 - . . scaffold1813 WUBlastX LINE_L2 113302 113505 35 - . . scaffold1813 WUBlastX LINE_RTE-X 114141 114197 20 - . . scaffold1813 GLEAN promoter 114677 115676 0.394664 + . ID=CGI_10005995; scaffold1813 GLEAN mRNA 115677 127097 0.394664 + . ID=CGI_10005995; scaffold1813 GLEAN mRNA 127266 137768 1 - . ID=CGI_10005996; scaffold1813 GLEAN promoter 137769 138768 1 - . ID=CGI_10005996; scaffold1813 TRF Tandem_Repeat 139016 139069 108 + . . scaffold1814 GLEAN mRNA 14118 21091 0.753154 - . ID=CGI_10003975; scaffold1814 WUBlastX LINE_RTE-X 18517 19611 370 + . . scaffold1814 TRF Tandem_Repeat 19763 19822 57 + . . scaffold1814 GLEAN promoter 21092 22091 0.753154 - . ID=CGI_10003975; scaffold1814 WUBlastX LINE_L1-Tx1 22789 23055 45 - . . scaffold1814 WUBlastX LINE_L1-Tx1 22852 23397 29 - . . scaffold1814 WUBlastX LTR_Gypsy 29922 32945 2707 + . . scaffold1814 GLEAN promoter 42608 43607 0.191152 + . ID=CGI_10003976; scaffold1814 GLEAN mRNA 43608 54779 0.191152 + . ID=CGI_10003976; scaffold1814 WUBlastX LINE_Penelope 55527 56618 556 + . . scaffold1814 TRF Tandem_Repeat 73961 74012 68 + . . scaffold1814 WUBlastX LTR_Ngaro 78990 79463 272 - . . scaffold1814 WUBlastX LTR_Ngaro 78993 79649 74 - . . scaffold1814 WUBlastX LTR_Ngaro 79609 79677 38 - . . scaffold1814 WUBlastX LTR_Ngaro 79683 79766 56 - . . scaffold1814 WUBlastX LTR_Ngaro 79686 79838 43 - . . scaffold1814 WUBlastX LTR_Ngaro 79781 79909 25 - . . scaffold1814 WUBlastX LTR_Ngaro 79796 79954 22 - . . scaffold1814 WUBlastX LTR_Ngaro 80198 80401 47 - . . scaffold1814 WUBlastX LTR_Ngaro 80358 80648 58 - . . scaffold1815 WUBlastX LINE_L2 1621 2367 111 + . . scaffold1815 WUBlastX LINE_CR1 2041 2301 112 + . . scaffold1815 WUBlastX LINE_L2 2375 2473 39 + . . scaffold1815 WUBlastX LINE_L2 2378 2803 33 + . . scaffold1815 GLEAN mRNA 4876 33806 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 17946 18036 155 + . . scaffold1815 TRF Tandem_Repeat 17986 18091 95 + . . scaffold1815 TRF Tandem_Repeat 19503 19609 133 + . . scaffold1815 GLEAN promoter 29414 30413 0.99879 + . ID=CGI_10010260; scaffold1815 TRF Tandem_Repeat 30095 30133 60 + . . scaffold1815 GLEAN mRNA 30414 38880 0.99879 + . ID=CGI_10010260; scaffold1815 TRF Tandem_Repeat 32231 32297 71 + . . scaffold1815 TRF Tandem_Repeat 32792 32825 68 + . . scaffold1815 TRF Tandem_Repeat 32823 32855 66 + . . scaffold1815 TRF Tandem_Repeat 33043 33089 94 + . . scaffold1815 GLEAN promoter 33807 34806 0.348078 - . ID=CGI_10010259; scaffold1815 TRF Tandem_Repeat 35478 35544 89 + . . scaffold1815 GLEAN promoter 40524 41523 0.999999 + . ID=CGI_10010261; scaffold1815 GLEAN mRNA 41524 49047 0.999999 + . ID=CGI_10010261; scaffold1815 WUBlastX LTR_Pao 44902 45222 34 - . . scaffold1815 WUBlastX LTR_Pao 44965 46344 735 - . . scaffold1815 WUBlastX LTR_Pao 45259 46722 629 - . . scaffold1815 WUBlastX LTR_Pao 46347 47381 163 - . . scaffold1815 GLEAN promoter 53163 54162 0.999572 + . ID=CGI_10010262; scaffold1815 GLEAN mRNA 54163 54549 0.999572 + . ID=CGI_10010262; scaffold1815 GLEAN mRNA 61012 61971 0.836231 - . ID=CGI_10010263; scaffold1815 GLEAN promoter 61972 62971 0.836231 - . ID=CGI_10010263; scaffold1815 TRF Tandem_Repeat 71083 71434 397 + . . scaffold1815 TRF Tandem_Repeat 71085 71437 438 + . . scaffold1815 GLEAN promoter 76260 77259 0.958168 + . ID=CGI_10010264; scaffold1815 GLEAN mRNA 77260 100243 0.958168 + . ID=CGI_10010264; scaffold1815 GLEAN mRNA 100759 107052 1 - . ID=CGI_10010265; scaffold1815 TRF Tandem_Repeat 106383 106431 98 + . . scaffold1815 GLEAN promoter 107053 108052 1 - . ID=CGI_10010265; scaffold1815 GLEAN mRNA 109214 109432 1 - . ID=CGI_10010266; scaffold1815 GLEAN promoter 109433 110432 1 - . ID=CGI_10010266; scaffold1815 WUBlastX DNA_Kolobok-Hyd 149396 149554 21 + . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 149791 149904 22 + . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 149839 149904 26 + . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 149869 149937 23 + . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 150131 150583 35 + . . scaffold1815 WUBlastX DNA_Kolobok-Hyd 150377 150721 35 + . . scaffold1815 TRF Tandem_Repeat 152992 153075 91 + . . scaffold1815 TRF Tandem_Repeat 153125 153181 114 + . . scaffold1815 WUBlastX LINE_L1 154529 154654 20 + . . scaffold1815 WUBlastX LINE_L1-Tx1 155094 155696 34 + . . scaffold1815 GLEAN mRNA 160606 173386 0.911004 - . ID=CGI_10010267; scaffold1815 TRF Tandem_Repeat 170698 170724 54 + . . scaffold1815 TRF Tandem_Repeat 170910 170960 50 + . . scaffold1815 TRF Tandem_Repeat 170917 170962 56 + . . scaffold1815 GLEAN promoter 172639 173638 0.42328 + . ID=CGI_10010268; scaffold1815 GLEAN promoter 173387 174386 0.911004 - . ID=CGI_10010267; scaffold1815 GLEAN mRNA 173639 183434 0.42328 + . ID=CGI_10010268; scaffold1815 TRF Tandem_Repeat 185688 186422 1039 + . . scaffold1815 TRF Tandem_Repeat 195399 195436 76 + . . scaffold1815 TRF Tandem_Repeat 197145 197206 115 + . . scaffold1815 TRF Tandem_Repeat 197411 197454 52 + . . scaffold1815 TRF Tandem_Repeat 198657 198696 71 + . . scaffold1815 TRF Tandem_Repeat 199222 199906 701 + . . scaffold1815 TRF Tandem_Repeat 199538 199912 577 + . . scaffold1815 TRF Tandem_Repeat 199598 199644 94 + . . scaffold1815 TRF Tandem_Repeat 199700 199736 74 + . . scaffold1815 TRF Tandem_Repeat 199796 199820 50 + . . scaffold1815 TRF Tandem_Repeat 199880 199926 94 + . . scaffold1815 GLEAN promoter 200041 201040 0.999789 + . ID=CGI_10010269; scaffold1815 TRF Tandem_Repeat 200250 200288 78 + . . scaffold1815 TRF Tandem_Repeat 200465 200516 86 + . . scaffold1815 TRF Tandem_Repeat 200465 200522 77 + . . scaffold1815 TRF Tandem_Repeat 200465 200522 54 + . . scaffold1815 TRF Tandem_Repeat 200766 200804 71 + . . scaffold1815 GLEAN mRNA 201041 206726 0.999789 + . ID=CGI_10010269; scaffold1815 TRF Tandem_Repeat 201046 201169 221 + . . scaffold1815 TRF Tandem_Repeat 206820 207158 272 + . . scaffold1815 TRF Tandem_Repeat 209138 209804 871 + . . scaffold1815 TRF Tandem_Repeat 217160 217215 85 + . . scaffold1815 TRF Tandem_Repeat 217170 217710 865 + . . scaffold1815 TRF Tandem_Repeat 217291 217336 65 + . . scaffold1815 TRF Tandem_Repeat 217412 217457 56 + . . scaffold1815 TRF Tandem_Repeat 217532 217577 65 + . . scaffold1815 GLEAN promoter 218267 219266 0.948466 + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 218325 218462 231 + . . scaffold1815 TRF Tandem_Repeat 218567 219017 713 + . . scaffold1815 TRF Tandem_Repeat 218646 218756 70 + . . scaffold1815 GLEAN mRNA 219267 233312 0.948466 + . ID=CGI_10010270; scaffold1815 TRF Tandem_Repeat 220450 220963 902 + . . scaffold1815 TRF Tandem_Repeat 223446 223498 83 + . . scaffold1815 TRF Tandem_Repeat 223446 223498 79 + . . scaffold1815 TRF Tandem_Repeat 227709 228189 305 + . . scaffold1815 TRF Tandem_Repeat 232170 232774 991 + . . scaffold1815 TRF Tandem_Repeat 233627 233733 162 + . . scaffold1815 TRF Tandem_Repeat 233848 233903 103 + . . scaffold1815 WUBlastX LINE_RTE-X 235492 235758 45 - . . scaffold1815 WUBlastX LINE_RTE-X 236502 236729 32 - . . scaffold1815 WUBlastX LINE_RTE-X 236690 236968 28 - . . scaffold1815 WUBlastX LINE_RTE-X 236786 236956 40 - . . scaffold1815 WUBlastX LINE_L2 237121 237249 45 - . . scaffold1815 WUBlastX LINE_L1 237130 237330 38 - . . scaffold1815 WUBlastX LINE_L2 237351 237482 37 - . . scaffold1815 GLEAN mRNA 237374 237631 0.998748 - . ID=CGI_10010271; scaffold1815 WUBlastX LINE_L1 237494 237598 61 - . . scaffold1815 GLEAN promoter 237632 238631 0.998748 - . ID=CGI_10010271; scaffold1815 TRF Tandem_Repeat 237644 237675 64 + . . scaffold1815 WUBlastX LINE_L1-Tx1 259725 260354 157 + . . scaffold1816 TRF Tandem_Repeat 4442 4483 84 + . . scaffold1816 TRF Tandem_Repeat 8604 8663 93 + . . scaffold1816 TRF Tandem_Repeat 8777 8828 104 + . . scaffold1816 TRF Tandem_Repeat 8879 8904 52 + . . scaffold1816 TRF Tandem_Repeat 9005 9056 63 + . . scaffold1816 TRF Tandem_Repeat 15349 15384 72 + . . scaffold1816 GLEAN promoter 15450 16449 0.994697 + . ID=CGI_10014390; scaffold1816 GLEAN mRNA 16450 18126 0.994697 + . ID=CGI_10014390; scaffold1816 GLEAN promoter 18422 19421 0.999372 + . ID=CGI_10014391; scaffold1816 WUBlastX DNA_TcMar-Tc1 19038 19745 75 + . . scaffold1816 WUBlastX DNA_TcMar-Tc1 19251 19733 78 + . . scaffold1816 GLEAN mRNA 19422 19805 0.999372 + . ID=CGI_10014391; scaffold1816 TRF Tandem_Repeat 31537 31612 73 + . . scaffold1816 GLEAN promoter 31618 32617 0.695555 + . ID=CGI_10014392; scaffold1816 GLEAN mRNA 32618 44068 0.695555 + . ID=CGI_10014392; scaffold1816 TRF Tandem_Repeat 39562 39607 65 + . . scaffold1816 TRF Tandem_Repeat 39660 39693 59 + . . scaffold1816 TRF Tandem_Repeat 44365 44416 61 + . . scaffold1816 TRF Tandem_Repeat 44631 44671 82 + . . scaffold1816 GLEAN mRNA 47015 54593 0.999586 - . ID=CGI_10014393; scaffold1816 TRF Tandem_Repeat 49368 49439 80 + . . scaffold1816 TRF Tandem_Repeat 50384 50481 151 + . . scaffold1816 GLEAN promoter 54594 55593 0.999586 - . ID=CGI_10014393; scaffold1816 WUBlastX LINE_L1 55148 55201 31 + . . scaffold1816 WUBlastX LINE_Rex-Babar 55751 55837 27 + . . scaffold1816 WUBlastX LINE_L1-Tx1 55768 57762 627 + . . scaffold1816 GLEAN mRNA 61928 72823 0.787173 - . ID=CGI_10014394; scaffold1816 TRF Tandem_Repeat 69747 70091 210 + . . scaffold1816 GLEAN promoter 72824 73823 0.787173 - . ID=CGI_10014394; scaffold1816 GLEAN promoter 74163 75162 0.999372 + . ID=CGI_10014395; scaffold1816 GLEAN mRNA 75163 75918 0.999372 + . ID=CGI_10014395; scaffold1816 GLEAN mRNA 76473 80040 0.558395 - . ID=CGI_10014396; scaffold1816 GLEAN promoter 80041 81040 0.558395 - . ID=CGI_10014396; scaffold1816 TRF Tandem_Repeat 88454 88501 96 + . . scaffold1816 TRF Tandem_Repeat 92117 92150 59 + . . scaffold1816 GLEAN mRNA 95413 103635 1 - . ID=CGI_10014397; scaffold1816 TRF Tandem_Repeat 96570 96615 67 + . . scaffold1816 TRF Tandem_Repeat 99025 99049 50 + . . scaffold1816 GLEAN promoter 103636 104635 1 - . ID=CGI_10014397; scaffold1816 TRF Tandem_Repeat 106981 107016 72 + . . scaffold1816 GLEAN promoter 109695 110694 0.998785 + . ID=CGI_10014398; scaffold1816 GLEAN mRNA 110695 122090 0.998785 + . ID=CGI_10014398; scaffold1816 TRF Tandem_Repeat 117805 117829 50 + . . scaffold1816 WUBlastX LINE_L2 120106 120333 46 + . . scaffold1816 WUBlastX LINE_L2 120124 120390 38 + . . scaffold1816 WUBlastX RC_Helitron 120392 120625 49 + . . scaffold1816 TRF Tandem_Repeat 124539 124580 84 + . . scaffold1816 TRF Tandem_Repeat 126625 126674 68 + . . scaffold1816 TRF Tandem_Repeat 126850 127813 1315 + . . scaffold1816 TRF Tandem_Repeat 151491 151578 126 + . . scaffold1816 TRF Tandem_Repeat 156415 156458 88 + . . scaffold1816 GLEAN promoter 159173 160172 0.776794 + . ID=CGI_10014399; scaffold1816 GLEAN promoter 159491 160490 0.999998 + . ID=CGI_10014400; scaffold1816 GLEAN mRNA 160173 160376 0.776794 + . ID=CGI_10014399; scaffold1816 GLEAN mRNA 160491 161378 0.999998 + . ID=CGI_10014400; scaffold1816 WUBlastX DNA_Harbinger 178787 178939 60 - . . scaffold1816 GLEAN mRNA 181401 181879 0.998856 - . ID=CGI_10014401; scaffold1816 GLEAN promoter 181880 182879 0.998856 - . ID=CGI_10014401; scaffold1816 TRF Tandem_Repeat 192963 193049 93 + . . scaffold1816 GLEAN promoter 204470 205469 0.819371 + . ID=CGI_10014402; scaffold1816 GLEAN mRNA 205470 210228 0.819371 + . ID=CGI_10014402; scaffold1816 TRF Tandem_Repeat 206738 206765 56 + . . scaffold1816 TRF Tandem_Repeat 206919 206943 50 + . . scaffold1816 WUBlastX DNA_Kolobok 208183 208353 32 + . . scaffold1816 WUBlastX DNA_Kolobok 209159 209353 86 + . . scaffold1816 WUBlastX DNA_Kolobok 209255 209371 43 + . . scaffold1816 WUBlastX DNA_Kolobok 209712 209921 66 + . . scaffold1816 WUBlastX DNA_Kolobok 210279 210440 42 - . . scaffold1816 GLEAN promoter 223049 224048 1 + . ID=CGI_10014403; scaffold1816 GLEAN mRNA 224049 225793 1 + . ID=CGI_10014403; scaffold1816 GLEAN promoter 227840 228839 1 + . ID=CGI_10014404; scaffold1816 GLEAN mRNA 228840 240677 1 + . ID=CGI_10014404; scaffold1816 TRF Tandem_Repeat 230581 230672 142 + . . scaffold1816 TRF Tandem_Repeat 230813 230909 106 + . . scaffold1816 WUBlastX DNA_Maverick 251619 251876 40 + . . scaffold1816 TRF Tandem_Repeat 252035 252101 93 + . . scaffold1816 WUBlastX LTR_Pao 252826 252912 24 + . . scaffold1816 WUBlastX LTR_Pao 252914 253252 22 + . . scaffold1816 WUBlastX LTR_Pao 252971 253195 58 + . . scaffold1816 WUBlastX LTR_Pao 253019 253273 44 + . . scaffold1816 TRF Tandem_Repeat 260277 260421 175 + . . scaffold1816 TRF Tandem_Repeat 260795 260831 74 + . . scaffold1816 TRF Tandem_Repeat 261773 261821 98 + . . scaffold1816 GLEAN promoter 265709 266708 0.575115 + . ID=CGI_10014405; scaffold1816 WUBlastX DNA_Kolobok-Hyd 266065 266166 25 + . . scaffold1816 WUBlastX DNA_Kolobok-Hyd 266271 267023 58 + . . scaffold1816 GLEAN mRNA 266709 267077 0.575115 + . ID=CGI_10014405; scaffold1816 WUBlastX DNA_Kolobok-Hyd 267358 267603 21 + . . scaffold1816 WUBlastX DNA_Kolobok-Hyd 267400 267603 46 + . . scaffold1816 WUBlastX DNA_MuDR 271159 272619 355 + . . scaffold1816 WUBlastX DNA_MuDR 272503 272724 81 + . . scaffold1816 WUBlastX DNA_NOF? 273138 273740 137 + . . scaffold1816 GLEAN promoter 274304 275303 0.992548 + . ID=CGI_10014406; scaffold1816 GLEAN mRNA 275304 288042 0.992548 + . ID=CGI_10014406; scaffold1816 TRF Tandem_Repeat 276455 276580 225 + . . scaffold1816 TRF Tandem_Repeat 279117 279171 110 + . . scaffold1816 WUBlastX LINE_L1 290684 290791 26 + . . scaffold1816 WUBlastX LINE_L1 291285 292088 55 + . . scaffold1816 WUBlastX LINE_RTE-X 291423 292115 211 + . . scaffold1816 WUBlastX LINE_RTE-X 291507 292091 328 + . . scaffold1816 WUBlastX LINE_RTE-X 292069 292296 65 + . . scaffold1816 WUBlastX LINE_CR1 292318 293079 189 + . . scaffold1816 WUBlastX LINE_L2 292483 293106 379 + . . scaffold1816 WUBlastX LINE_L2 293079 293540 306 + . . scaffold1816 WUBlastX LINE_L2 293489 293905 230 + . . scaffold1816 WUBlastX LINE_CR1-L2 293893 294336 46 + . . scaffold1816 WUBlastX LINE_L2 293902 294249 78 + . . scaffold1816 WUBlastX LINE_L2 294255 294521 38 + . . scaffold1816 WUBlastX LINE_RTE-X 294734 295375 147 + . . scaffold1816 WUBlastX LINE_RTE-X 294866 295246 166 + . . scaffold1816 WUBlastX LINE_CR1 298319 299320 384 + . . scaffold1816 WUBlastX LINE_Rex-Babar 299276 299332 33 + . . scaffold1816 WUBlastX LINE_CR1 299344 300306 605 + . . scaffold1816 WUBlastX LINE_L1 301204 301836 34 + . . scaffold1816 WUBlastX LINE_CR1 301309 302973 1296 + . . scaffold1816 WUBlastX LINE_Jockey 303652 303684 21 + . . scaffold1816 GLEAN mRNA 305468 306001 0.999047 - . ID=CGI_10014407; scaffold1816 GLEAN promoter 306002 307001 0.999047 - . ID=CGI_10014407; scaffold1816 WUBlastX LTR_Gypsy-Cigr 306286 306960 112 - . . scaffold1816 WUBlastX LTR_Gypsy-Cigr 306298 306765 150 - . . scaffold1816 TRF Tandem_Repeat 312466 312497 55 + . . scaffold1816 GLEAN mRNA 321699 322232 0.999375 - . ID=CGI_10014408; scaffold1816 GLEAN promoter 322233 323232 0.999375 - . ID=CGI_10014408; scaffold1816 WUBlastX LTR_Gypsy-Cigr 322404 322976 117 - . . scaffold1816 WUBlastX LTR_Gypsy-Cigr 322518 322991 155 - . . scaffold1816 WUBlastX LTR_Gypsy 322521 323138 83 - . . scaffold1816 GLEAN promoter 323875 324874 0.466115 + . ID=CGI_10014409; scaffold1816 GLEAN mRNA 324875 335830 0.466115 + . ID=CGI_10014409; scaffold1816 GLEAN promoter 337371 338370 0.615916 + . ID=CGI_10014410; scaffold1816 GLEAN mRNA 338371 348320 0.615916 + . ID=CGI_10014410; scaffold1816 GLEAN mRNA 349858 360135 0.277013 - . ID=CGI_10014411; scaffold1816 TRF Tandem_Repeat 350818 351025 265 + . . scaffold1816 TRF Tandem_Repeat 353082 353108 54 + . . scaffold1816 TRF Tandem_Repeat 357055 357156 179 + . . scaffold1816 TRF Tandem_Repeat 357055 357156 159 + . . scaffold1816 GLEAN promoter 360136 361135 0.277013 - . ID=CGI_10014411; scaffold1816 TRF Tandem_Repeat 362273 362363 146 + . . scaffold1816 TRF Tandem_Repeat 362273 362363 157 + . . scaffold1816 TRF Tandem_Repeat 364843 364916 148 + . . scaffold1816 WUBlastX LINE_Penelope 368181 368966 76 + . . scaffold1816 WUBlastX LINE_Penelope 368307 368966 168 + . . scaffold1816 WUBlastX LINE_Penelope 368969 369079 43 + . . scaffold1816 WUBlastX LTR_Ngaro 400252 400476 40 - . . scaffold1816 WUBlastX LTR_Ngaro 400291 400479 77 - . . scaffold1817 WUBlastX LINE_CR1-L2 3172 4242 161 + . . scaffold1817 WUBlastX LINE_CR1-L2 3352 4266 243 + . . scaffold1817 WUBlastX LINE_CR1-L2 4254 4418 47 + . . scaffold1817 WUBlastX LINE_CR1-L2 5296 5646 115 + . . scaffold1817 WUBlastX LINE_CR1-L2 5627 6505 647 + . . scaffold1817 WUBlastX LINE_CR1-L2 5636 7291 522 + . . scaffold1817 GLEAN mRNA 9897 44966 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LINE_L1-Tx1 16353 16541 44 + . . scaffold1817 WUBlastX LINE_L1-Tx1 17588 17683 27 + . . scaffold1817 WUBlastX LINE_L1-Tx1 17640 18032 45 + . . scaffold1817 WUBlastX LINE_L1-Tx1 17748 18128 99 + . . scaffold1817 WUBlastX LINE_L1-Tx1 18119 18400 91 + . . scaffold1817 TRF Tandem_Repeat 18989 19038 100 + . . scaffold1817 WUBlastX LTR_Gypsy-Cigr 23955 24503 47 + . . scaffold1817 WUBlastX LTR_Gypsy 24048 24665 145 + . . scaffold1817 WUBlastX LTR_Gypsy 24666 24767 20 + . . scaffold1817 WUBlastX LTR_Gypsy 24829 25320 76 + . . scaffold1817 WUBlastX LTR_Gypsy-Cigr 24940 28668 1367 + . . scaffold1817 WUBlastX LTR_Copia 28480 28845 45 + . . scaffold1817 TRF Tandem_Repeat 36936 36970 52 + . . scaffold1817 GLEAN promoter 43832 44831 0.531537 + . ID=CGI_10005251; scaffold1817 TRF Tandem_Repeat 44076 44113 51 + . . scaffold1817 GLEAN mRNA 44832 48760 0.531537 + . ID=CGI_10005251; scaffold1817 GLEAN promoter 44967 45966 0.453567 - . ID=CGI_10005250; scaffold1817 WUBlastX LTR_Ngaro 84592 85212 142 + . . scaffold1817 WUBlastX LTR_Ngaro 85227 86069 263 + . . scaffold1817 WUBlastX LTR_Ngaro 85308 86012 396 + . . scaffold1817 WUBlastX DNA_TcMar-Tigge 86348 86590 26 + . . scaffold1817 WUBlastX DNA_TcMar-Tc2 86486 86599 31 + . . scaffold1817 WUBlastX DNA_TcMar-Tc2 86641 87246 130 + . . scaffold1817 WUBlastX DNA_TcMar-Pogo 86644 87369 21 + . . scaffold1817 WUBlastX DNA_TcMar-Fot1 87443 87664 63 + . . scaffold1817 WUBlastX DNA_TcMar-Tc2 87506 87871 86 + . . scaffold1817 WUBlastX DNA_TcMar-Tc2 87515 87694 93 + . . scaffold1817 WUBlastX LTR_Ngaro 88292 88603 171 + . . scaffold1817 WUBlastX LTR_Ngaro 88355 88726 198 + . . scaffold1817 WUBlastX LTR_Ngaro 88602 89162 279 + . . scaffold1817 WUBlastX LTR_Ngaro 89205 89588 24 + . . scaffold1817 WUBlastX LTR_Ngaro 89289 89525 30 + . . scaffold1817 WUBlastX LTR_Ngaro 89588 90082 145 + . . scaffold1817 WUBlastX LINE_L1 98729 99040 88 - . . scaffold1817 WUBlastX LINE_L1-Tx1 98780 99115 139 - . . scaffold1817 WUBlastX LINE_L1-Tx1 98780 99055 234 - . . scaffold1817 WUBlastX LINE_L1-Tx1 99082 99219 22 - . . scaffold1817 WUBlastX LINE_L1 99091 99198 23 - . . scaffold1817 WUBlastX LINE_L2 99235 99333 27 - . . scaffold1817 WUBlastX LINE_L1-Tx1 100118 100264 43 - . . scaffold1817 WUBlastX LINE_L1 100151 100228 44 - . . scaffold1817 WUBlastX LINE_L1-Tx1 100242 100463 77 - . . scaffold1817 WUBlastX LINE_L1-Tx1 106175 106579 32 - . . scaffold1817 WUBlastX LINE_L1-Tx1 106253 106546 106 - . . scaffold1817 WUBlastX LINE_L1-Tx1 106542 107081 160 - . . scaffold1817 WUBlastX LINE_L2 107484 107963 87 - . . scaffold1817 TRF Tandem_Repeat 109121 109227 124 + . . scaffold1817 TRF Tandem_Repeat 110703 110792 90 + . . scaffold1817 TRF Tandem_Repeat 110758 110848 137 + . . scaffold1817 WUBlastX DNA_MuDR 118498 118782 112 - . . scaffold1817 WUBlastX DNA_MuDR 118552 118785 138 - . . scaffold1817 WUBlastX DNA_MuDR 118752 119126 32 - . . scaffold1817 WUBlastX DNA_MuDR 118809 119090 58 - . . scaffold1817 TRF Tandem_Repeat 119999 120106 112 + . . scaffold1818 WUBlastX LTR_DIRS 2532 2765 60 + . . scaffold1818 GLEAN promoter 2793 3792 0.999068 + . ID=CGI_10003624; scaffold1818 WUBlastX LTR_DIRS 2871 2972 41 + . . scaffold1818 GLEAN mRNA 3793 4179 0.999068 + . ID=CGI_10003624; scaffold1818 GLEAN mRNA 7577 56224 0.992021 - . ID=CGI_10003625; scaffold1818 TRF Tandem_Repeat 20640 21787 1155 + . . scaffold1818 WUBlastX DNA_Zator 42744 42893 46 - . . scaffold1818 GLEAN promoter 46348 47347 1 + . ID=CGI_10003626; scaffold1818 GLEAN mRNA 47348 56192 1 + . ID=CGI_10003626; scaffold1818 TRF Tandem_Repeat 53337 54350 1152 + . . scaffold1818 GLEAN promoter 56225 57224 0.992021 - . ID=CGI_10003625; scaffold1818 TRF Tandem_Repeat 60351 60387 74 + . . scaffold1818 TRF Tandem_Repeat 60471 60497 54 + . . scaffold1818 TRF Tandem_Repeat 62690 62731 84 + . . scaffold1818 TRF Tandem_Repeat 64945 64999 110 + . . scaffold1818 TRF Tandem_Repeat 65917 65959 86 + . . scaffold1818 GLEAN promoter 66722 67721 1 + . ID=CGI_10003627; scaffold1818 GLEAN mRNA 67722 69215 1 + . ID=CGI_10003627; scaffold1819 GLEAN promoter 8626 9625 1 + . ID=CGI_10007286; scaffold1819 GLEAN mRNA 9626 10831 1 + . ID=CGI_10007286; scaffold1819 TRF Tandem_Repeat 13979 14038 75 + . . scaffold1819 TRF Tandem_Repeat 23738 23784 53 + . . scaffold1819 TRF Tandem_Repeat 24816 24863 96 + . . scaffold1819 TRF Tandem_Repeat 40649 40704 71 + . . scaffold1819 TRF Tandem_Repeat 40653 40707 65 + . . scaffold1819 WUBlastX LTR_Gypsy 47241 47681 96 - . . scaffold1819 WUBlastX LTR_Gypsy 47334 47696 167 - . . scaffold1819 WUBlastX LTR_Gypsy 47394 47735 306 - . . scaffold1819 WUBlastX LTR_Gypsy 47578 48174 376 - . . scaffold1819 WUBlastX LTR_Gypsy 47710 48177 385 - . . scaffold1819 WUBlastX LTR_Gypsy-Cigr 48020 49522 669 - . . scaffold1819 WUBlastX LTR_Gypsy 49229 49774 70 - . . scaffold1819 WUBlastX LTR_Gypsy 49667 50404 141 - . . scaffold1819 WUBlastX LTR_Gypsy-Cigr 49940 50425 152 - . . scaffold1819 GLEAN promoter 55648 56647 0.997491 + . ID=CGI_10007287; scaffold1819 GLEAN mRNA 56648 59457 0.997491 + . ID=CGI_10007287; scaffold1819 TRF Tandem_Repeat 62247 62420 111 + . . scaffold1819 GLEAN mRNA 64332 64568 0.73346 - . ID=CGI_10007288; scaffold1819 GLEAN promoter 64569 65568 0.73346 - . ID=CGI_10007288; scaffold1819 TRF Tandem_Repeat 65972 66006 52 + . . scaffold1819 TRF Tandem_Repeat 66052 66099 78 + . . scaffold1819 WUBlastX LTR_Gypsy 71785 72081 41 - . . scaffold1819 WUBlastX LTR_Gypsy 71845 72519 242 - . . scaffold1819 GLEAN promoter 72378 73377 0.672196 + . ID=CGI_10007289; scaffold1819 WUBlastX LTR_Gypsy 72461 72955 147 - . . scaffold1819 WUBlastX LTR_Gypsy 72470 73057 87 - . . scaffold1819 WUBlastX LTR_Gypsy 73005 73130 39 - . . scaffold1819 WUBlastX LTR_Gypsy 73023 73187 32 - . . scaffold1819 WUBlastX LTR_Gypsy 73053 73247 21 - . . scaffold1819 WUBlastX LTR_Gypsy 73053 73145 38 - . . scaffold1819 GLEAN mRNA 73378 81205 0.672196 + . ID=CGI_10007289; scaffold1819 GLEAN promoter 80868 81867 0.672352 + . ID=CGI_10007290; scaffold1819 GLEAN mRNA 81868 84136 0.672352 + . ID=CGI_10007290; scaffold1819 GLEAN mRNA 86906 102240 0.949703 - . ID=CGI_10007291; scaffold1819 GLEAN promoter 102241 103240 0.949703 - . ID=CGI_10007291; scaffold1819 TRF Tandem_Repeat 102747 103277 906 + . . scaffold1819 WUBlastX LINE_L1-Tx1 104854 105873 332 - . . scaffold1819 WUBlastX LINE_L1 106073 106138 22 - . . scaffold1819 GLEAN mRNA 106096 109792 0.535448 - . ID=CGI_10007292; scaffold1819 GLEAN promoter 108575 109574 0.709752 + . ID=CGI_10007293; scaffold1819 GLEAN mRNA 109575 111014 0.709752 + . ID=CGI_10007293; scaffold1819 GLEAN promoter 109793 110792 0.535448 - . ID=CGI_10007292; scaffold1819 GLEAN mRNA 121408 135110 0.701307 - . ID=CGI_10007294; scaffold1819 GLEAN promoter 134746 135745 0.528508 + . ID=CGI_10007295; scaffold1819 GLEAN promoter 135111 136110 0.701307 - . ID=CGI_10007294; scaffold1819 GLEAN mRNA 135746 154163 0.528508 + . ID=CGI_10007295; scaffold1819 TRF Tandem_Repeat 141024 141412 232 + . . scaffold1819 TRF Tandem_Repeat 141120 141238 220 + . . scaffold1819 GLEAN promoter 163815 164814 0.998816 + . ID=CGI_10007296; scaffold1819 GLEAN mRNA 164815 165762 0.998816 + . ID=CGI_10007296; scaffold1819 WUBlastX LINE_L1-Tx1 170620 170907 28 + . . scaffold1819 WUBlastX LINE_L1-Tx1 172345 172506 52 + . . scaffold1819 WUBlastX LINE_L1 172503 172976 67 - . . scaffold1819 WUBlastX LINE_L1 172617 173039 67 - . . scaffold1819 WUBlastX LINE_L1-Tx1 172764 172967 75 - . . scaffold1819 WUBlastX LINE_L1-Tx1 175637 175690 21 - . . scaffold1819 WUBlastX LINE_L1-Tx1 176012 176200 44 - . . scaffold1819 WUBlastX LINE_L1-Tx1 176042 176296 63 - . . scaffold1819 WUBlastX LINE_L1-Tx1 176042 176200 75 - . . scaffold1819 WUBlastX LINE_L1 176185 176463 38 - . . scaffold182 WUBlastX DNA_Harbinger 326 661 334 + . . scaffold182 WUBlastX LINE_CR1-L2 3774 4109 58 + . . scaffold182 GLEAN mRNA 6259 8743 1 - . ID=CGI_10001072; scaffold182 GLEAN promoter 8744 9743 1 - . ID=CGI_10001072; scaffold182 TRF Tandem_Repeat 8907 8956 100 + . . scaffold182 TRF Tandem_Repeat 12061 12098 67 + . . scaffold182 TRF Tandem_Repeat 12136 12498 591 + . . scaffold1820 GLEAN promoter 3378 4377 0.840322 + . ID=CGI_10002445; scaffold1820 GLEAN mRNA 4378 12719 0.840322 + . ID=CGI_10002445; scaffold1820 WUBlastX DNA_IS4EU 10438 10632 21 - . . scaffold1820 GLEAN promoter 11913 12912 0.834235 + . ID=CGI_10002446; scaffold1820 GLEAN mRNA 12913 35993 0.834235 + . ID=CGI_10002446; scaffold1820 TRF Tandem_Repeat 23944 23973 60 + . . scaffold1820 TRF Tandem_Repeat 25505 25580 66 + . . scaffold1820 TRF Tandem_Repeat 31020 31063 70 + . . scaffold1820 TRF Tandem_Repeat 32969 33672 537 + . . scaffold1820 TRF Tandem_Repeat 33331 33672 548 + . . scaffold1820 TRF Tandem_Repeat 36398 37047 560 + . . scaffold1820 TRF Tandem_Repeat 36410 36662 319 + . . scaffold1820 GLEAN promoter 36486 37485 0.999543 + . ID=CGI_10002447; scaffold1820 TRF Tandem_Repeat 36667 37047 483 + . . scaffold1820 TRF Tandem_Repeat 37071 37376 244 + . . scaffold1820 TRF Tandem_Repeat 37071 37376 271 + . . scaffold1820 GLEAN mRNA 37486 40292 0.999543 + . ID=CGI_10002447; scaffold1820 TRF Tandem_Repeat 39172 39212 73 + . . scaffold1821 WUBlastX LINE_CR1 7593 7826 57 - . . scaffold1821 WUBlastX LTR_DIRS 14305 16119 599 + . . scaffold1821 TRF Tandem_Repeat 29752 29893 257 + . . scaffold1821 GLEAN mRNA 34054 43331 0.999999 - . ID=CGI_10011281; scaffold1821 GLEAN promoter 43332 44331 0.999999 - . ID=CGI_10011281; scaffold1821 TRF Tandem_Repeat 53999 54025 54 + . . scaffold1821 GLEAN mRNA 71408 97029 0.995527 - . ID=CGI_10011282; scaffold1821 TRF Tandem_Repeat 73653 73695 86 + . . scaffold1821 GLEAN promoter 74573 75572 0.999661 + . ID=CGI_10011283; scaffold1821 GLEAN mRNA 75573 77093 0.999661 + . ID=CGI_10011283; scaffold1821 TRF Tandem_Repeat 80660 80707 69 + . . scaffold1821 GLEAN promoter 96391 97390 1 + . ID=CGI_10011284; scaffold1821 GLEAN promoter 97030 98029 0.995527 - . ID=CGI_10011282; scaffold1821 GLEAN mRNA 97391 99472 1 + . ID=CGI_10011284; scaffold1821 TRF Tandem_Repeat 98927 98966 80 + . . scaffold1821 GLEAN mRNA 105566 114791 0.889829 - . ID=CGI_10011285; scaffold1821 GLEAN promoter 114792 115791 0.889829 - . ID=CGI_10011285; scaffold1821 GLEAN mRNA 132829 136254 0.999992 - . ID=CGI_10011286; scaffold1821 GLEAN promoter 134238 135237 0.960122 + . ID=CGI_10011287; scaffold1821 GLEAN mRNA 135238 139438 0.960122 + . ID=CGI_10011287; scaffold1821 GLEAN promoter 136255 137254 0.999992 - . ID=CGI_10011286; scaffold1821 TRF Tandem_Repeat 140257 140416 122 + . . scaffold1821 TRF Tandem_Repeat 140346 140447 123 + . . scaffold1821 TRF Tandem_Repeat 144871 144931 95 + . . scaffold1821 GLEAN mRNA 145630 148501 0.734309 - . ID=CGI_10011288; scaffold1821 GLEAN promoter 148502 149501 0.734309 - . ID=CGI_10011288; scaffold1821 GLEAN mRNA 152734 153912 1 - . ID=CGI_10011289; scaffold1821 GLEAN promoter 153716 154715 0.99998 + . ID=CGI_10011290; scaffold1821 GLEAN promoter 153913 154912 1 - . ID=CGI_10011289; scaffold1821 GLEAN mRNA 154716 165448 0.99998 + . ID=CGI_10011290; scaffold1821 GLEAN mRNA 167929 177659 0.681651 - . ID=CGI_10011291; scaffold1821 WUBlastX LINE_L1 171478 171843 44 + . . scaffold1821 WUBlastX LINE_RTE-X 171553 171906 107 + . . scaffold1821 WUBlastX LINE_RTE-BovB 171559 171858 290 + . . scaffold1821 WUBlastX LINE_RTE-BovB 171908 172567 441 + . . scaffold1821 GLEAN promoter 177660 178659 0.681651 - . ID=CGI_10011291; scaffold1821 GLEAN mRNA 178597 184043 0.990901 - . ID=CGI_10011292; scaffold1821 TRF Tandem_Repeat 181317 181363 94 + . . scaffold1821 WUBlastX LINE_L2 183886 184263 127 + . . scaffold1821 GLEAN promoter 184044 185043 0.990901 - . ID=CGI_10011292; scaffold1821 WUBlastX LINE_CR1-L2 184283 184423 28 + . . scaffold1821 WUBlastX LINE_L2 184316 184420 38 + . . scaffold1821 GLEAN promoter 187949 188948 0.999676 + . ID=CGI_10011293; scaffold1821 GLEAN mRNA 188949 203016 0.999676 + . ID=CGI_10011293; scaffold1821 TRF Tandem_Repeat 191892 191950 118 + . . scaffold1821 GLEAN promoter 203446 204445 1 + . ID=CGI_10011294; scaffold1821 GLEAN mRNA 204446 207684 1 + . ID=CGI_10011294; scaffold1821 TRF Tandem_Repeat 205954 206005 104 + . . scaffold1821 GLEAN promoter 208504 209503 0.510977 + . ID=CGI_10011295; scaffold1821 GLEAN mRNA 209504 214133 0.510977 + . ID=CGI_10011295; scaffold1821 TRF Tandem_Repeat 211813 211870 107 + . . scaffold1821 TRF Tandem_Repeat 212314 213058 1088 + . . scaffold1821 GLEAN promoter 214380 215379 0.999351 + . ID=CGI_10011296; scaffold1821 GLEAN mRNA 215380 220506 0.999351 + . ID=CGI_10011296; scaffold1821 TRF Tandem_Repeat 218102 218161 120 + . . scaffold1821 GLEAN promoter 221395 222394 0.999987 + . ID=CGI_10011297; scaffold1821 GLEAN mRNA 222395 236586 0.999987 + . ID=CGI_10011297; scaffold1821 TRF Tandem_Repeat 236492 236559 120 + . . scaffold1821 GLEAN promoter 240330 241329 0.999945 + . ID=CGI_10011298; scaffold1821 GLEAN mRNA 241330 246601 0.999945 + . ID=CGI_10011298; scaffold1821 TRF Tandem_Repeat 244371 244433 117 + . . scaffold1821 GLEAN promoter 251132 252131 0.998201 + . ID=CGI_10011299; scaffold1821 GLEAN mRNA 252132 259362 0.998201 + . ID=CGI_10011299; scaffold1821 TRF Tandem_Repeat 256363 256423 122 + . . scaffold1821 GLEAN promoter 258428 259427 0.617947 + . ID=CGI_10011300; scaffold1821 GLEAN mRNA 259428 260657 0.617947 + . ID=CGI_10011300; scaffold1821 WUBlastX LINE_RTE-BovB 264973 265182 29 - . . scaffold1821 WUBlastX LINE_RTE-BovB 264973 265134 52 - . . scaffold1821 WUBlastX LINE_RTE-BovB 265181 265597 212 - . . scaffold1821 WUBlastX LINE_RTE-BovB 265397 265957 163 - . . scaffold1821 WUBlastX LINE_RTE-BovB 265893 266051 91 - . . scaffold1821 WUBlastX LINE_RTE-BovB 266052 266468 61 - . . scaffold1821 WUBlastX LINE_RTE-BovB 266052 266327 85 - . . scaffold1821 WUBlastX LINE_RTE-BovB 266449 266577 41 - . . scaffold1821 TRF Tandem_Repeat 270255 270359 103 + . . scaffold1821 TRF Tandem_Repeat 271533 271626 90 + . . scaffold1821 GLEAN promoter 272628 273627 1 + . ID=CGI_10011301; scaffold1821 GLEAN mRNA 273628 280938 1 + . ID=CGI_10011301; scaffold1821 TRF Tandem_Repeat 274993 275032 80 + . . scaffold1821 GLEAN promoter 285351 286350 1 + . ID=CGI_10011302; scaffold1821 GLEAN mRNA 286351 287179 1 + . ID=CGI_10011302; scaffold1822 WUBlastX LTR_Gypsy 8815 8904 47 + . . scaffold1822 WUBlastX LTR_Gypsy 8877 9263 91 + . . scaffold1822 WUBlastX LTR_Gypsy 10316 10546 75 + . . scaffold1822 WUBlastX LTR_Gypsy 10383 11990 436 + . . scaffold1822 WUBlastX LTR_Gypsy 10581 11936 677 + . . scaffold1822 WUBlastX LTR_Gypsy 11942 12223 197 + . . scaffold1822 WUBlastX LTR_Gypsy 12229 12756 268 + . . scaffold1822 WUBlastX LTR_Gypsy 12510 13208 49 + . . scaffold1822 TRF Tandem_Repeat 14377 14448 53 + . . scaffold1822 WUBlastX LTR_Gypsy 25569 25754 30 + . . scaffold1822 WUBlastX LTR_Gypsy 25575 25703 42 + . . scaffold1822 WUBlastX LTR_Gypsy 25961 26110 51 + . . scaffold1822 GLEAN mRNA 43671 44374 0.999764 - . ID=CGI_10012045; scaffold1822 GLEAN promoter 44375 45374 0.999764 - . ID=CGI_10012045; scaffold1822 GLEAN mRNA 48895 56087 0.648466 - . ID=CGI_10012046; scaffold1822 GLEAN promoter 56088 57087 0.648466 - . ID=CGI_10012046; scaffold1822 WUBlastX LINE_L1-Tx1 61542 61658 20 - . . scaffold1822 WUBlastX LINE_L1-Tx1 62258 62626 25 - . . scaffold1822 WUBlastX LINE_L1-Tx1 62261 62560 39 - . . scaffold1822 GLEAN mRNA 65868 66107 0.997893 - . ID=CGI_10012047; scaffold1822 GLEAN promoter 66108 67107 0.997893 - . ID=CGI_10012047; scaffold1822 TRF Tandem_Repeat 67023 67069 94 + . . scaffold1822 GLEAN mRNA 69644 79386 0.997893 - . ID=CGI_10012048; scaffold1822 GLEAN promoter 79307 80306 0.999998 + . ID=CGI_10012049; scaffold1822 GLEAN promoter 79387 80386 0.997893 - . ID=CGI_10012048; scaffold1822 GLEAN mRNA 80307 89880 0.999998 + . ID=CGI_10012049; scaffold1822 TRF Tandem_Repeat 85391 85436 92 + . . scaffold1822 GLEAN mRNA 95298 108582 0.998901 - . ID=CGI_10012050; scaffold1822 TRF Tandem_Repeat 101284 101494 167 + . . scaffold1822 TRF Tandem_Repeat 101493 101663 216 + . . scaffold1822 TRF Tandem_Repeat 102187 102272 91 + . . scaffold1822 TRF Tandem_Repeat 102338 102513 144 + . . scaffold1822 TRF Tandem_Repeat 102338 102529 208 + . . scaffold1822 TRF Tandem_Repeat 102556 102698 151 + . . scaffold1822 TRF Tandem_Repeat 105784 105899 137 + . . scaffold1822 TRF Tandem_Repeat 106134 106166 66 + . . scaffold1822 GLEAN promoter 106781 107780 0.882623 + . ID=CGI_10012051; scaffold1822 TRF Tandem_Repeat 107151 107204 108 + . . scaffold1822 TRF Tandem_Repeat 107455 107570 137 + . . scaffold1822 GLEAN mRNA 107781 114616 0.882623 + . ID=CGI_10012051; scaffold1822 GLEAN promoter 108583 109582 0.998901 - . ID=CGI_10012050; scaffold1822 GLEAN promoter 115627 116626 0.99905 + . ID=CGI_10012052; scaffold1822 GLEAN mRNA 116627 117787 0.99905 + . ID=CGI_10012052; scaffold1822 GLEAN promoter 119612 120611 0.318937 + . ID=CGI_10012053; scaffold1822 GLEAN mRNA 120612 153372 0.318937 + . ID=CGI_10012053; scaffold1822 TRF Tandem_Repeat 121223 121261 64 + . . scaffold1822 TRF Tandem_Repeat 125199 125224 52 + . . scaffold1822 GLEAN mRNA 141297 143484 0.999981 - . ID=CGI_10012054; scaffold1822 GLEAN promoter 143485 144484 0.999981 - . ID=CGI_10012054; scaffold1822 GLEAN promoter 159873 160872 0.993907 + . ID=CGI_10012056; scaffold1822 GLEAN mRNA 160007 160429 0.551063 - . ID=CGI_10012055; scaffold1822 GLEAN promoter 160430 161429 0.551063 - . ID=CGI_10012055; scaffold1822 GLEAN mRNA 160873 163732 0.993907 + . ID=CGI_10012056; scaffold1822 TRF Tandem_Repeat 163011 163041 53 + . . scaffold1822 GLEAN promoter 164456 165455 0.593389 + . ID=CGI_10012058; scaffold1822 GLEAN mRNA 164670 165095 0.593388 - . ID=CGI_10012057; scaffold1822 GLEAN promoter 165096 166095 0.593388 - . ID=CGI_10012057; scaffold1822 GLEAN mRNA 165456 165847 0.593389 + . ID=CGI_10012058; scaffold1822 WUBlastX DNA_Merlin 170634 171506 399 - . . scaffold1822 GLEAN mRNA 175586 176593 0.733495 - . ID=CGI_10012059; scaffold1822 GLEAN promoter 176594 177593 0.733495 - . ID=CGI_10012059; scaffold1822 GLEAN promoter 177924 178923 0.999349 + . ID=CGI_10012060; scaffold1822 TRF Tandem_Repeat 178037 178117 155 + . . scaffold1822 GLEAN mRNA 178924 191589 0.999349 + . ID=CGI_10012060; scaffold1822 GLEAN mRNA 188312 195535 1 - . ID=CGI_10012061; scaffold1822 TRF Tandem_Repeat 188802 189266 702 + . . scaffold1822 TRF Tandem_Repeat 189423 189613 373 + . . scaffold1822 GLEAN promoter 194757 195756 0.998504 + . ID=CGI_10012062; scaffold1822 GLEAN promoter 195536 196535 1 - . ID=CGI_10012061; scaffold1822 GLEAN mRNA 195757 208122 0.998504 + . ID=CGI_10012062; scaffold1822 TRF Tandem_Repeat 205120 205197 86 + . . scaffold1822 TRF Tandem_Repeat 205123 205189 107 + . . scaffold1822 TRF Tandem_Repeat 205496 205661 179 + . . scaffold1822 TRF Tandem_Repeat 205775 206326 700 + . . scaffold1822 GLEAN mRNA 209568 220424 1 - . ID=CGI_10012063; scaffold1822 GLEAN promoter 220425 221424 1 - . ID=CGI_10012063; scaffold1822 TRF Tandem_Repeat 221129 221159 62 + . . scaffold1822 TRF Tandem_Repeat 234378 234712 469 + . . scaffold1822 TRF Tandem_Repeat 234378 234712 421 + . . scaffold1822 TRF Tandem_Repeat 240376 240420 90 + . . scaffold1822 TRF Tandem_Repeat 241041 241095 110 + . . scaffold1822 GLEAN promoter 242164 243163 0.998829 + . ID=CGI_10012064; scaffold1822 GLEAN mRNA 243164 252410 0.998829 + . ID=CGI_10012064; scaffold1822 TRF Tandem_Repeat 244358 244408 102 + . . scaffold1822 TRF Tandem_Repeat 247704 247737 68 + . . scaffold1822 GLEAN promoter 263747 264746 0.994124 + . ID=CGI_10012065; scaffold1822 GLEAN mRNA 264747 272038 0.994124 + . ID=CGI_10012065; scaffold1822 TRF Tandem_Repeat 268477 268534 109 + . . scaffold1822 GLEAN mRNA 278037 306686 1 - . ID=CGI_10012066; scaffold1822 TRF Tandem_Repeat 280979 281808 1104 + . . scaffold1822 TRF Tandem_Repeat 285492 285542 68 + . . scaffold1822 TRF Tandem_Repeat 294142 294183 57 + . . scaffold1822 TRF Tandem_Repeat 294389 294423 54 + . . scaffold1822 GLEAN promoter 306687 307686 1 - . ID=CGI_10012066; scaffold1822 TRF Tandem_Repeat 307369 307416 96 + . . scaffold1823 GLEAN promoter 1 670 0.99778 + . ID=CGI_10005168; scaffold1823 TRF Tandem_Repeat 486 568 87 + . . scaffold1823 GLEAN mRNA 671 22392 0.99778 + . ID=CGI_10005168; scaffold1823 TRF Tandem_Repeat 10971 14362 4618 + . . scaffold1823 TRF Tandem_Repeat 15073 15811 925 + . . scaffold1823 TRF Tandem_Repeat 15810 16719 1345 + . . scaffold1823 WUBlastX LINE_L2 17914 18816 406 - . . scaffold1823 TRF Tandem_Repeat 19828 19884 105 + . . scaffold1823 TRF Tandem_Repeat 19991 20036 92 + . . scaffold1823 GLEAN promoter 24975 25974 0.99537 + . ID=CGI_10005169; scaffold1823 WUBlastX DNA_IS4EU 25639 25932 29 + . . scaffold1823 WUBlastX DNA_IS4EU 25765 25929 62 + . . scaffold1823 WUBlastX DNA_Kolobok-IS4 25804 25959 40 + . . scaffold1823 GLEAN mRNA 25975 45605 0.99537 + . ID=CGI_10005169; scaffold1823 WUBlastX DNA_Kolobok-IS4 26459 27103 78 + . . scaffold1823 TRF Tandem_Repeat 30328 30393 107 + . . scaffold1823 TRF Tandem_Repeat 30331 30392 63 + . . scaffold1823 GLEAN mRNA 30474 35715 0.656507 - . ID=CGI_10005170; scaffold1823 GLEAN promoter 35716 36715 0.656507 - . ID=CGI_10005170; scaffold1823 TRF Tandem_Repeat 47318 47385 136 + . . scaffold1823 WUBlastX LINE_L1-Tx1 47980 49047 220 + . . scaffold1823 TRF Tandem_Repeat 57565 57624 120 + . . scaffold1823 TRF Tandem_Repeat 58148 58627 687 + . . scaffold1823 TRF Tandem_Repeat 58730 58769 80 + . . scaffold1823 WUBlastX LINE_RTE-X 58930 59403 111 - . . scaffold1823 WUBlastX LINE_RTE-X 58930 59226 153 - . . scaffold1823 WUBlastX RC_Helitron 59822 60376 91 + . . scaffold1823 WUBlastX DNA_Kolobok-IS4 64291 65355 502 + . . scaffold1823 WUBlastX DNA_IS4EU 65906 67057 294 - . . scaffold1823 WUBlastX DNA_Kolobok-IS4 67375 67941 93 - . . scaffold1823 WUBlastX DNA_IS4EU 67375 67737 124 - . . scaffold1823 TRF Tandem_Repeat 70009 70800 1119 + . . scaffold1823 TRF Tandem_Repeat 70827 70874 60 + . . scaffold1823 TRF Tandem_Repeat 98507 98554 64 + . . scaffold1823 TRF Tandem_Repeat 98507 98545 53 + . . scaffold1823 WUBlastX DNA_Sola 107976 109079 240 - . . scaffold1823 WUBlastX DNA_Sola 108060 109643 198 - . . scaffold1823 TRF Tandem_Repeat 113074 113108 70 + . . scaffold1824 TRF Tandem_Repeat 4213 4242 60 + . . scaffold1824 TRF Tandem_Repeat 4657 4725 93 + . . scaffold1824 TRF Tandem_Repeat 7575 7616 75 + . . scaffold1824 GLEAN mRNA 17275 17823 0.618186 - . ID=CGI_10004551; scaffold1824 GLEAN promoter 17824 18823 0.618186 - . ID=CGI_10004551; scaffold1824 TRF Tandem_Repeat 26977 27089 165 + . . scaffold1824 TRF Tandem_Repeat 29292 29345 108 + . . scaffold1824 GLEAN mRNA 37846 44305 1 - . ID=CGI_10004552; scaffold1824 GLEAN promoter 44306 45305 1 - . ID=CGI_10004552; scaffold1824 TRF Tandem_Repeat 90619 92160 1674 + . . scaffold1824 WUBlastX LTR_DIRS 95985 96989 112 + . . scaffold1824 WUBlastX LTR_DIRS 96543 96980 143 + . . scaffold1824 WUBlastX LTR_DIRS 96543 97169 100 + . . scaffold1824 WUBlastX LTR_DIRS 96988 97305 80 + . . scaffold1824 WUBlastX LTR_DIRS 96996 97433 20 + . . scaffold1824 WUBlastX LTR_DIRS 97379 97867 142 + . . scaffold1824 WUBlastX LINE_L2 100372 100596 40 - . . scaffold1824 TRF Tandem_Repeat 101604 101692 155 + . . scaffold1825 TRF Tandem_Repeat 961 998 76 + . . scaffold1825 TRF Tandem_Repeat 3104 3128 50 + . . scaffold1825 GLEAN mRNA 5374 5862 0.734554 - . ID=CGI_10011136; scaffold1825 GLEAN promoter 5863 6862 0.734554 - . ID=CGI_10011136; scaffold1825 TRF Tandem_Repeat 18775 18808 50 + . . scaffold1825 TRF Tandem_Repeat 21936 22044 177 + . . scaffold1825 GLEAN promoter 22959 23958 0.650923 + . ID=CGI_10011137; scaffold1825 GLEAN mRNA 23959 32916 0.650923 + . ID=CGI_10011137; scaffold1825 TRF Tandem_Repeat 37844 37949 121 + . . scaffold1825 TRF Tandem_Repeat 37845 37935 92 + . . scaffold1825 TRF Tandem_Repeat 37853 37923 124 + . . scaffold1825 TRF Tandem_Repeat 37861 37949 88 + . . scaffold1825 TRF Tandem_Repeat 42588 42641 99 + . . scaffold1825 WUBlastX LINE_CR1 43620 43679 22 + . . scaffold1825 WUBlastX LINE_L2 44317 45039 206 + . . scaffold1825 WUBlastX LINE_L2 45168 45470 24 + . . scaffold1825 TRF Tandem_Repeat 46279 46312 59 + . . scaffold1825 GLEAN mRNA 52552 63242 0.967566 - . ID=CGI_10011138; scaffold1825 WUBlastX LTR_Gypsy 58733 62929 2299 - . . scaffold1825 WUBlastX LTR_Gypsy 62123 63082 237 - . . scaffold1825 GLEAN promoter 62875 63874 0.999994 + . ID=CGI_10011139; scaffold1825 GLEAN promoter 63243 64242 0.967566 - . ID=CGI_10011138; scaffold1825 GLEAN mRNA 63875 71382 0.999994 + . ID=CGI_10011139; scaffold1825 TRF Tandem_Repeat 71007 71062 103 + . . scaffold1825 GLEAN mRNA 73170 75098 0.95907 - . ID=CGI_10011140; scaffold1825 TRF Tandem_Repeat 74033 74167 137 + . . scaffold1825 GLEAN promoter 75099 76098 0.95907 - . ID=CGI_10011140; scaffold1825 GLEAN mRNA 75470 79570 0.721202 - . ID=CGI_10011141; scaffold1825 TRF Tandem_Repeat 76650 76695 92 + . . scaffold1825 TRF Tandem_Repeat 76695 76747 106 + . . scaffold1825 GLEAN promoter 79571 80570 0.721202 - . ID=CGI_10011141; scaffold1825 WUBlastX LINE_CR1-L2 81480 81809 84 + . . scaffold1825 WUBlastX LINE_CR1-L2 81829 82011 29 + . . scaffold1825 GLEAN promoter 83912 84911 0.999273 + . ID=CGI_10011142; scaffold1825 GLEAN mRNA 84912 88743 0.999273 + . ID=CGI_10011142; scaffold1825 TRF Tandem_Repeat 88104 88146 86 + . . scaffold1825 GLEAN promoter 89888 90887 0.430581 + . ID=CGI_10011143; scaffold1825 GLEAN mRNA 90888 110963 0.430581 + . ID=CGI_10011143; scaffold1825 TRF Tandem_Repeat 95889 96173 455 + . . scaffold1825 TRF Tandem_Repeat 101399 101616 373 + . . scaffold1825 TRF Tandem_Repeat 104381 104834 836 + . . scaffold1825 GLEAN mRNA 110810 119405 0.999351 - . ID=CGI_10011144; scaffold1825 TRF Tandem_Repeat 116715 116843 114 + . . scaffold1825 GLEAN promoter 119406 120405 0.999351 - . ID=CGI_10011144; scaffold1825 GLEAN mRNA 120442 120771 1 - . ID=CGI_10011145; scaffold1825 GLEAN promoter 120772 121771 1 - . ID=CGI_10011145; scaffold1825 TRF Tandem_Repeat 124806 124861 112 + . . scaffold1825 WUBlastX LINE_RTE-X 127562 127732 98 + . . scaffold1825 WUBlastX LINE_RTE-X 127762 128235 86 + . . scaffold1825 TRF Tandem_Repeat 129340 129406 62 + . . scaffold1825 TRF Tandem_Repeat 129347 129406 60 + . . scaffold1825 TRF Tandem_Repeat 129524 131857 514 + . . scaffold1825 TRF Tandem_Repeat 129583 132029 1368 + . . scaffold1825 TRF Tandem_Repeat 129682 131842 206 + . . scaffold1825 TRF Tandem_Repeat 130046 131957 536 + . . scaffold1825 TRF Tandem_Repeat 130232 130298 116 + . . scaffold1825 TRF Tandem_Repeat 130995 131874 109 + . . scaffold1825 TRF Tandem_Repeat 132029 132105 50 + . . scaffold1825 TRF Tandem_Repeat 132181 132372 151 + . . scaffold1825 TRF Tandem_Repeat 132182 132369 78 + . . scaffold1825 TRF Tandem_Repeat 132182 132369 78 + . . scaffold1825 TRF Tandem_Repeat 132184 132346 111 + . . scaffold1825 TRF Tandem_Repeat 135653 135713 104 + . . scaffold1825 TRF Tandem_Repeat 135653 135726 58 + . . scaffold1825 TRF Tandem_Repeat 138360 138425 80 + . . scaffold1825 TRF Tandem_Repeat 138594 139936 1958 + . . scaffold1825 GLEAN promoter 145338 146337 0.790331 + . ID=CGI_10011146; scaffold1825 GLEAN mRNA 146338 162532 0.790331 + . ID=CGI_10011146; scaffold1825 TRF Tandem_Repeat 146718 146763 56 + . . scaffold1825 TRF Tandem_Repeat 157086 158005 1324 + . . scaffold1825 WUBlastX LINE_L1 158483 159073 59 + . . scaffold1825 WUBlastX LINE_L2 158585 159199 173 + . . scaffold1825 WUBlastX LINE_CR1-L2 159785 159835 36 + . . scaffold1825 WUBlastX LINE_L2 159910 160122 76 + . . scaffold1825 WUBlastX LINE_L2 159961 160122 117 + . . scaffold1825 WUBlastX LINE_L2 160256 160714 123 + . . scaffold1825 GLEAN mRNA 165468 177148 0.695303 - . ID=CGI_10011147; scaffold1825 WUBlastX LINE_L2 166802 167023 51 - . . scaffold1825 WUBlastX LINE_CR1-L2 166811 167113 43 - . . scaffold1825 TRF Tandem_Repeat 171459 172244 808 + . . scaffold1825 TRF Tandem_Repeat 175366 175409 88 + . . scaffold1825 TRF Tandem_Repeat 175410 175439 60 + . . scaffold1825 GLEAN promoter 177149 178148 0.695303 - . ID=CGI_10011147; scaffold1825 TRF Tandem_Repeat 177382 177447 132 + . . scaffold1825 TRF Tandem_Repeat 177548 177602 110 + . . scaffold1825 GLEAN mRNA 182636 183920 0.985007 - . ID=CGI_10011148; scaffold1825 GLEAN promoter 183604 184603 0.58796 + . ID=CGI_10011149; scaffold1825 GLEAN promoter 183921 184920 0.985007 - . ID=CGI_10011148; scaffold1825 GLEAN mRNA 184604 195892 0.58796 + . ID=CGI_10011149; scaffold1825 TRF Tandem_Repeat 191428 191746 355 + . . scaffold1825 TRF Tandem_Repeat 191431 191746 292 + . . scaffold1825 TRF Tandem_Repeat 192094 192250 269 + . . scaffold1825 TRF Tandem_Repeat 192094 192921 331 + . . scaffold1825 TRF Tandem_Repeat 192094 192921 370 + . . scaffold1825 TRF Tandem_Repeat 192440 192581 92 + . . scaffold1825 TRF Tandem_Repeat 192498 192909 206 + . . scaffold1825 TRF Tandem_Repeat 194424 194597 107 + . . scaffold1825 TRF Tandem_Repeat 194513 195130 784 + . . scaffold1825 TRF Tandem_Repeat 195037 195413 240 + . . scaffold1825 TRF Tandem_Repeat 195150 195220 88 + . . scaffold1825 TRF Tandem_Repeat 195302 195393 69 + . . scaffold1825 TRF Tandem_Repeat 205971 206148 80 + . . scaffold1825 TRF Tandem_Repeat 208283 208460 80 + . . scaffold1825 TRF Tandem_Repeat 208332 208460 77 + . . scaffold1825 TRF Tandem_Repeat 216819 217584 1102 + . . scaffold1825 TRF Tandem_Repeat 223535 223589 110 + . . scaffold1825 WUBlastX LINE_RTE-X 225799 226095 43 - . . scaffold1825 WUBlastX LINE_RTE-X 225955 226152 34 - . . scaffold1825 TRF Tandem_Repeat 227053 227086 68 + . . scaffold1825 TRF Tandem_Repeat 227250 227286 74 + . . scaffold1825 TRF Tandem_Repeat 227482 227529 96 + . . scaffold1825 TRF Tandem_Repeat 227641 227693 88 + . . scaffold1825 TRF Tandem_Repeat 228764 228892 77 + . . scaffold1825 TRF Tandem_Repeat 228764 228892 77 + . . scaffold1825 WUBlastX LINE_RTE-X 229246 229971 75 - . . scaffold1825 WUBlastX LINE_RTE-X 229944 230459 136 - . . scaffold1825 WUBlastX LINE_RTE-X 230136 230549 104 - . . scaffold1825 WUBlastX LINE_RTE-X 230558 231643 113 - . . scaffold1825 WUBlastX LINE_L1-Tx1 232060 232260 110 - . . scaffold1825 WUBlastX LINE_L2 232250 232549 55 - . . scaffold1825 WUBlastX LINE_L2 232262 232489 65 - . . scaffold1825 WUBlastX LINE_L2 232262 232624 43 - . . scaffold1825 TRF Tandem_Repeat 232729 232815 104 + . . scaffold1825 TRF Tandem_Repeat 232871 233017 98 + . . scaffold1825 TRF Tandem_Repeat 243296 243385 180 + . . scaffold1825 WUBlastX DNA_TcMar-Tc1 254213 254635 54 - . . scaffold1825 WUBlastX DNA_TcMar-Tc1 254372 254635 76 - . . scaffold1825 TRF Tandem_Repeat 257364 258240 1067 + . . scaffold1825 TRF Tandem_Repeat 268866 268977 152 + . . scaffold1825 WUBlastX DNA_hAT-hATw 277738 278493 65 - . . scaffold1825 WUBlastX DNA_hAT-hATw 278056 278484 102 - . . scaffold1826 TRF Tandem_Repeat 2068 2109 57 + . . scaffold1826 WUBlastX LINE_L1 6421 6501 23 + . . scaffold1826 WUBlastX LINE_L1 6680 7141 69 + . . scaffold1826 WUBlastX LINE_L1-Tx1 7137 7838 211 + . . scaffold1826 WUBlastX LINE_L1-Tx1 7260 7787 239 + . . scaffold1826 WUBlastX LINE_L1 7365 7811 267 + . . scaffold1826 WUBlastX LINE_L1-Tx1 7805 9037 216 + . . scaffold1826 WUBlastX LINE_L1 9005 9070 22 + . . scaffold1826 WUBlastX LTR_Gypsy 34656 36506 1251 + . . scaffold1826 WUBlastX LTR_Gypsy 38352 39509 165 + . . scaffold1826 WUBlastX LTR_Gypsy 38409 39284 211 + . . scaffold1826 WUBlastX LTR_Gypsy 38547 39242 233 + . . scaffold1826 WUBlastX LTR_Gypsy 38562 39365 220 + . . scaffold1826 GLEAN promoter 38665 39664 0.756838 + . ID=CGI_10006241; scaffold1826 GLEAN mRNA 39665 57424 0.756838 + . ID=CGI_10006241; scaffold1826 WUBlastX LTR_Gypsy 39953 40141 44 + . . scaffold1826 WUBlastX LTR_Gypsy 40152 40280 29 + . . scaffold1826 WUBlastX LTR_Gypsy 40861 41163 72 + . . scaffold1826 WUBlastX LTR_Gypsy 40912 41145 82 + . . scaffold1826 WUBlastX LTR_Gypsy-Cigr 40951 41145 91 + . . scaffold1826 WUBlastX LTR_Gypsy 40984 41142 113 + . . scaffold1826 WUBlastX LTR_Gypsy 40984 41181 107 + . . scaffold1826 WUBlastX LTR_Gypsy 41151 41345 102 + . . scaffold1826 WUBlastX LTR_Gypsy 41160 41411 60 + . . scaffold1826 WUBlastX DNA_Harbinger 47881 48165 164 - . . scaffold1826 TRF Tandem_Repeat 92097 92146 82 + . . scaffold1826 GLEAN promoter 96515 97514 0.987779 + . ID=CGI_10006242; scaffold1826 GLEAN mRNA 97515 103404 0.987779 + . ID=CGI_10006242; scaffold1826 TRF Tandem_Repeat 98153 98206 74 + . . scaffold1826 TRF Tandem_Repeat 99613 100530 1339 + . . scaffold1826 GLEAN promoter 122351 123350 0.999926 + . ID=CGI_10006243; scaffold1826 GLEAN mRNA 123351 134256 0.999926 + . ID=CGI_10006243; scaffold1826 TRF Tandem_Repeat 130465 130508 52 + . . scaffold1826 TRF Tandem_Repeat 141441 141527 104 + . . scaffold1826 TRF Tandem_Repeat 141608 141818 156 + . . scaffold1826 GLEAN promoter 141663 142662 1 + . ID=CGI_10006244; scaffold1826 TRF Tandem_Repeat 141817 141966 167 + . . scaffold1826 GLEAN mRNA 142663 145651 1 + . ID=CGI_10006244; scaffold1826 TRF Tandem_Repeat 145184 145208 50 + . . scaffold1827 TRF Tandem_Repeat 37210 37990 1172 + . . scaffold1827 TRF Tandem_Repeat 39730 39791 124 + . . scaffold1827 TRF Tandem_Repeat 40502 40541 80 + . . scaffold1827 TRF Tandem_Repeat 46003 46033 53 + . . scaffold1827 TRF Tandem_Repeat 46245 47330 1323 + . . scaffold1827 TRF Tandem_Repeat 49613 49678 116 + . . scaffold1827 WUBlastX LTR_Gypsy 50890 51237 82 - . . scaffold1827 WUBlastX LTR_Gypsy 51037 51237 83 - . . scaffold1827 WUBlastX LTR_Gypsy 51088 51309 53 - . . scaffold1827 WUBlastX LTR_ERV1 51097 51363 37 - . . scaffold1827 WUBlastX LTR_Gypsy 51112 51237 86 - . . scaffold1827 TRF Tandem_Repeat 52015 52049 70 + . . scaffold1827 GLEAN promoter 53344 54343 0.593295 + . ID=CGI_10013796; scaffold1827 TRF Tandem_Repeat 53724 53766 54 + . . scaffold1827 GLEAN mRNA 54344 57547 0.593295 + . ID=CGI_10013796; scaffold1827 TRF Tandem_Repeat 58891 60221 1855 + . . scaffold1827 GLEAN promoter 64826 65825 1 + . ID=CGI_10013797; scaffold1827 GLEAN mRNA 65826 71552 1 + . ID=CGI_10013797; scaffold1827 GLEAN mRNA 76656 91588 1 - . ID=CGI_10013798; scaffold1827 GLEAN promoter 91589 92588 1 - . ID=CGI_10013798; scaffold1827 TRF Tandem_Repeat 93603 93629 54 + . . scaffold1827 TRF Tandem_Repeat 97261 97309 91 + . . scaffold1827 GLEAN promoter 103854 104853 0.99219 + . ID=CGI_10013799; scaffold1827 GLEAN mRNA 104854 119662 0.99219 + . ID=CGI_10013799; scaffold1827 TRF Tandem_Repeat 110545 110580 72 + . . scaffold1827 GLEAN promoter 118878 119877 0.997256 + . ID=CGI_10013800; scaffold1827 GLEAN mRNA 119878 149317 0.997256 + . ID=CGI_10013800; scaffold1827 TRF Tandem_Repeat 123462 123506 90 + . . scaffold1827 TRF Tandem_Repeat 129740 129822 150 + . . scaffold1827 TRF Tandem_Repeat 129820 129847 56 + . . scaffold1827 TRF Tandem_Repeat 130092 130118 54 + . . scaffold1827 GLEAN mRNA 137813 151526 0.938411 - . ID=CGI_10013801; scaffold1827 GLEAN promoter 151527 152526 0.938411 - . ID=CGI_10013801; scaffold1827 GLEAN mRNA 158377 158691 0.618241 - . ID=CGI_10013802; scaffold1827 GLEAN promoter 158692 159691 0.618241 - . ID=CGI_10013802; scaffold1827 TRF Tandem_Repeat 159067 159120 65 + . . scaffold1827 TRF Tandem_Repeat 174025 174089 121 + . . scaffold1827 WUBlastX LTR_DIRS 179135 179251 81 - . . scaffold1827 TRF Tandem_Repeat 190526 190565 80 + . . scaffold1827 WUBlastX LINE_L1-Tx1 191072 191347 50 - . . scaffold1827 WUBlastX LINE_L1-Tx1 191072 191401 24 - . . scaffold1827 TRF Tandem_Repeat 195940 195980 82 + . . scaffold1827 TRF Tandem_Repeat 196926 196971 74 + . . scaffold1827 TRF Tandem_Repeat 196929 196978 55 + . . scaffold1827 GLEAN mRNA 198705 211328 0.740724 - . ID=CGI_10013803; scaffold1827 TRF Tandem_Repeat 200320 200983 694 + . . scaffold1827 TRF Tandem_Repeat 200973 201276 139 + . . scaffold1827 TRF Tandem_Repeat 202858 203293 436 + . . scaffold1827 GLEAN promoter 211329 212328 0.740724 - . ID=CGI_10013803; scaffold1827 TRF Tandem_Repeat 214343 214566 319 + . . scaffold1827 TRF Tandem_Repeat 214801 215080 366 + . . scaffold1827 GLEAN promoter 245137 246136 0.64646 + . ID=CGI_10013804; scaffold1827 GLEAN mRNA 246137 270173 0.64646 + . ID=CGI_10013804; scaffold1827 GLEAN mRNA 270746 282849 0.586982 - . ID=CGI_10013805; scaffold1827 TRF Tandem_Repeat 272470 272655 302 + . . scaffold1827 TRF Tandem_Repeat 281111 281380 348 + . . scaffold1827 GLEAN promoter 282202 283201 0.997663 + . ID=CGI_10013806; scaffold1827 GLEAN promoter 282850 283849 0.586982 - . ID=CGI_10013805; scaffold1827 GLEAN mRNA 283202 288402 0.997663 + . ID=CGI_10013806; scaffold1827 TRF Tandem_Repeat 289647 289991 397 + . . scaffold1827 GLEAN mRNA 290412 299076 0.998826 - . ID=CGI_10013807; scaffold1827 TRF Tandem_Repeat 295901 296244 419 + . . scaffold1827 GLEAN promoter 299077 300076 0.998826 - . ID=CGI_10013807; scaffold1827 GLEAN promoter 299627 300626 0.449006 + . ID=CGI_10013808; scaffold1827 GLEAN mRNA 300627 306901 0.449006 + . ID=CGI_10013808; scaffold1827 TRF Tandem_Repeat 301033 302966 2562 + . . scaffold1827 GLEAN mRNA 310035 354687 0.394933 - . ID=CGI_10013809; scaffold1827 TRF Tandem_Repeat 323067 323093 54 + . . scaffold1827 TRF Tandem_Repeat 330123 330176 99 + . . scaffold1827 TRF Tandem_Repeat 331735 331812 147 + . . scaffold1827 WUBlastX LTR_Copia 340967 341509 27 - . . scaffold1827 TRF Tandem_Repeat 345269 345902 1079 + . . scaffold1827 TRF Tandem_Repeat 348737 349001 206 + . . scaffold1827 GLEAN promoter 354688 355687 0.394933 - . ID=CGI_10013809; scaffold1827 GLEAN promoter 360400 361399 0.999981 + . ID=CGI_10013810; scaffold1827 GLEAN mRNA 361400 361969 0.999981 + . ID=CGI_10013810; scaffold1827 TRF Tandem_Repeat 364037 364066 60 + . . scaffold1827 TRF Tandem_Repeat 367309 367353 90 + . . scaffold1827 GLEAN mRNA 367524 368435 1 - . ID=CGI_10013811; scaffold1827 GLEAN promoter 368436 368958 1 - . ID=CGI_10013811; scaffold1828 TRF Tandem_Repeat 75 102 56 + . . scaffold1828 TRF Tandem_Repeat 641 699 118 + . . scaffold1828 WUBlastX LINE_DRE 1042 1185 20 - . . scaffold1828 WUBlastX LINE_RTE-BovB 2993 3061 23 + . . scaffold1828 WUBlastX LINE_RTE-BovB 3036 3293 110 + . . scaffold1828 TRF Tandem_Repeat 9058 9222 165 + . . scaffold1828 TRF Tandem_Repeat 9058 9213 189 + . . scaffold1828 TRF Tandem_Repeat 39813 39865 92 + . . scaffold1828 TRF Tandem_Repeat 42526 42573 96 + . . scaffold1828 GLEAN promoter 43361 44360 0.650567 + . ID=CGI_10007016; scaffold1828 GLEAN mRNA 44361 45511 0.650567 + . ID=CGI_10007016; scaffold1828 TRF Tandem_Repeat 48015 48093 131 + . . scaffold1828 GLEAN mRNA 48704 49018 0.733483 - . ID=CGI_10007017; scaffold1828 GLEAN promoter 49019 50018 0.733483 - . ID=CGI_10007017; scaffold1828 GLEAN mRNA 52062 52607 0.999979 - . ID=CGI_10007018; scaffold1828 GLEAN promoter 52608 53607 0.999979 - . ID=CGI_10007018; scaffold1828 GLEAN promoter 59563 60562 0.999998 + . ID=CGI_10007019; scaffold1828 GLEAN mRNA 60563 77015 0.999998 + . ID=CGI_10007019; scaffold1828 TRF Tandem_Repeat 60957 61098 131 + . . scaffold1828 TRF Tandem_Repeat 67080 67150 142 + . . scaffold1828 TRF Tandem_Repeat 69172 69235 96 + . . scaffold1828 TRF Tandem_Repeat 69785 69840 112 + . . scaffold1828 TRF Tandem_Repeat 74608 74806 366 + . . scaffold1828 TRF Tandem_Repeat 75063 75113 75 + . . scaffold1828 TRF Tandem_Repeat 82932 82984 106 + . . scaffold1828 TRF Tandem_Repeat 83647 83692 92 + . . scaffold1828 TRF Tandem_Repeat 85628 85684 55 + . . scaffold1828 TRF Tandem_Repeat 86834 86892 118 + . . scaffold1828 TRF Tandem_Repeat 86924 86953 60 + . . scaffold1828 TRF Tandem_Repeat 87216 87268 81 + . . scaffold1828 TRF Tandem_Repeat 90570 90817 214 + . . scaffold1828 TRF Tandem_Repeat 92543 92681 63 + . . scaffold1828 GLEAN promoter 93052 94051 0.840317 + . ID=CGI_10007020; scaffold1828 GLEAN mRNA 94052 96695 0.840317 + . ID=CGI_10007020; scaffold1828 TRF Tandem_Repeat 99318 99833 775 + . . scaffold1828 GLEAN mRNA 105558 138513 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 107083 107134 77 + . . scaffold1828 TRF Tandem_Repeat 116043 116101 109 + . . scaffold1828 TRF Tandem_Repeat 119894 119943 100 + . . scaffold1828 TRF Tandem_Repeat 123466 123509 88 + . . scaffold1828 TRF Tandem_Repeat 123532 123581 100 + . . scaffold1828 TRF Tandem_Repeat 130466 130536 69 + . . scaffold1828 TRF Tandem_Repeat 135163 135213 84 + . . scaffold1828 TRF Tandem_Repeat 137520 137572 97 + . . scaffold1828 GLEAN promoter 138514 139513 0.565552 - . ID=CGI_10007021; scaffold1828 TRF Tandem_Repeat 139695 139738 79 + . . scaffold1828 TRF Tandem_Repeat 141012 141070 118 + . . scaffold1828 TRF Tandem_Repeat 143313 143349 58 + . . scaffold1828 TRF Tandem_Repeat 143644 143671 56 + . . scaffold1828 TRF Tandem_Repeat 145799 145842 88 + . . scaffold1828 TRF Tandem_Repeat 146076 146127 67 + . . scaffold1828 TRF Tandem_Repeat 146496 146550 101 + . . scaffold1828 TRF Tandem_Repeat 147055 147108 63 + . . scaffold1828 TRF Tandem_Repeat 150462 150509 96 + . . scaffold1829 GLEAN mRNA 622 3160 1 - . ID=CGI_10006705; scaffold1829 GLEAN promoter 3161 4160 1 - . ID=CGI_10006705; scaffold1829 GLEAN mRNA 46716 48323 0.593271 - . ID=CGI_10006706; scaffold1829 GLEAN promoter 48324 49323 0.593271 - . ID=CGI_10006706; scaffold1829 GLEAN promoter 60358 61357 0.999926 + . ID=CGI_10006707; scaffold1829 GLEAN mRNA 61358 78282 0.999926 + . ID=CGI_10006707; scaffold1829 GLEAN mRNA 83965 89474 0.992496 - . ID=CGI_10006708; scaffold1829 GLEAN promoter 89312 90311 0.992366 + . ID=CGI_10006709; scaffold1829 GLEAN promoter 89475 90474 0.992496 - . ID=CGI_10006708; scaffold1829 GLEAN mRNA 90312 96617 0.992366 + . ID=CGI_10006709; scaffold1829 GLEAN mRNA 97824 98969 0.999984 - . ID=CGI_10006710; scaffold1829 GLEAN promoter 98970 99969 0.999984 - . ID=CGI_10006710; scaffold1829 GLEAN promoter 102279 103278 0.554983 + . ID=CGI_10006711; scaffold1829 GLEAN mRNA 103279 105603 0.554983 + . ID=CGI_10006711; scaffold1829 GLEAN promoter 107980 108979 0.734306 + . ID=CGI_10006712; scaffold1829 GLEAN mRNA 108980 115721 0.734306 + . ID=CGI_10006712; scaffold1829 GLEAN mRNA 116472 128246 1 - . ID=CGI_10006713; scaffold1829 GLEAN promoter 126254 127253 0.88963 + . ID=CGI_10006714; scaffold1829 GLEAN mRNA 127254 133208 0.88963 + . ID=CGI_10006714; scaffold1829 GLEAN promoter 128247 129246 1 - . ID=CGI_10006713; scaffold1829 GLEAN mRNA 137215 154659 0.479034 - . ID=CGI_10006715; scaffold1829 GLEAN promoter 154660 155659 0.479034 - . ID=CGI_10006715; scaffold1830 TRF Tandem_Repeat 13186 13230 81 + . . scaffold1830 TRF Tandem_Repeat 13420 13449 60 + . . scaffold1830 GLEAN promoter 18859 19858 0.842897 + . ID=CGI_10002541; scaffold1830 GLEAN mRNA 19859 37743 0.842897 + . ID=CGI_10002541; scaffold1830 TRF Tandem_Repeat 34188 34222 70 + . . scaffold1830 TRF Tandem_Repeat 37060 37090 62 + . . scaffold1830 WUBlastX LINE_Penelope 38720 38860 69 + . . scaffold1830 TRF Tandem_Repeat 48445 48492 96 + . . scaffold1831 GLEAN promoter 1 174 0.99964 + . ID=CGI_10002912; scaffold1831 GLEAN mRNA 175 34937 0.99964 + . ID=CGI_10002912; scaffold1831 WUBlastX LINE_RTE-BovB 1132 1374 135 - . . scaffold1831 WUBlastX LINE_RTE-BovB 1153 1416 86 - . . scaffold1831 WUBlastX LINE_RTE-BovB 1383 1502 75 - . . scaffold1831 WUBlastX LINE_RTE-BovB 1413 1616 58 - . . scaffold1831 WUBlastX LINE_RTE-BovB 1455 1676 25 - . . scaffold1831 WUBlastX LINE_RTE-BovB 1806 1916 32 - . . scaffold1831 WUBlastX LINE_RTE-BovB 1806 1886 42 - . . scaffold1831 WUBlastX LTR_Gypsy 2588 3004 137 - . . scaffold1831 WUBlastX LTR_Gypsy 2702 2998 249 - . . scaffold1831 TRF Tandem_Repeat 4830 4991 306 + . . scaffold1831 TRF Tandem_Repeat 4991 5033 50 + . . scaffold1831 TRF Tandem_Repeat 13375 14225 817 + . . scaffold1831 TRF Tandem_Repeat 13383 14155 966 + . . scaffold1831 TRF Tandem_Repeat 18260 18293 59 + . . scaffold1831 TRF Tandem_Repeat 22660 22700 82 + . . scaffold1831 WUBlastX LINE_RTE-X 23335 24765 944 - . . scaffold1831 WUBlastX LINE_RTE-X 24109 24990 150 - . . scaffold1831 WUBlastX DNA_Harbinger 25147 25302 68 + . . scaffold1831 WUBlastX LINE_RTE-X 25511 25729 23 - . . scaffold1831 WUBlastX LINE_RTE-X 25595 25768 65 - . . scaffold1831 WUBlastX LINE_RTE-X 25595 25741 70 - . . scaffold1831 WUBlastX LINE_L2 25619 25807 38 - . . scaffold1831 WUBlastX LINE_L2 25619 25846 23 - . . scaffold1831 WUBlastX LINE_L1 26037 26147 20 - . . scaffold1831 WUBlastX LINE_CR1-L2 26318 26701 28 - . . scaffold1831 WUBlastX LINE_RTE-X 26435 26674 136 - . . scaffold1831 WUBlastX LINE_I 26447 26725 103 - . . scaffold1831 WUBlastX LINE_RTE-BovB 26456 26773 82 - . . scaffold1831 WUBlastX LINE_L1-Tx1 26579 26812 40 - . . scaffold1831 WUBlastX LINE_L1 26579 26896 25 - . . scaffold1831 TRF Tandem_Repeat 29392 29426 70 + . . scaffold1831 GLEAN mRNA 30321 42527 0.595655 - . ID=CGI_10002913; scaffold1831 WUBlastX LINE_RTE-X 30387 30704 97 - . . scaffold1831 WUBlastX LINE_RTE-X 30584 31324 253 - . . scaffold1831 WUBlastX LINE_RTE-X 31353 31667 161 - . . scaffold1831 WUBlastX LINE_RTE-X 31785 31892 91 - . . scaffold1831 WUBlastX LINE_L1-Tx1 32940 33647 209 + . . scaffold1831 WUBlastX LINE_I 33444 33857 53 + . . scaffold1831 WUBlastX LINE_I-Nimb 33543 34238 52 + . . scaffold1831 WUBlastX LINE_RTE-BovB 34026 34754 88 + . . scaffold1831 WUBlastX LINE_L1-Tx1 34296 34895 160 + . . scaffold1831 WUBlastX LINE_L1-Tx1 34302 34775 199 + . . scaffold1831 WUBlastX LINE_L1-Tx1 34880 35122 37 + . . scaffold1831 WUBlastX LINE_L1-Tx1 34985 37786 952 + . . scaffold1831 WUBlastX LINE_I 37682 37810 29 + . . scaffold1831 GLEAN promoter 42528 43527 0.595655 - . ID=CGI_10002913; scaffold1831 TRF Tandem_Repeat 58736 58995 188 + . . scaffold1831 TRF Tandem_Repeat 58896 59081 73 + . . scaffold1832 GLEAN promoter 1 287 0.999026 + . ID=CGI_10018464; scaffold1832 GLEAN mRNA 288 29413 0.999026 + . ID=CGI_10018464; scaffold1832 TRF Tandem_Repeat 9241 9914 1014 + . . scaffold1832 TRF Tandem_Repeat 13119 13152 52 + . . scaffold1832 TRF Tandem_Repeat 27341 27518 297 + . . scaffold1832 TRF Tandem_Repeat 36739 36845 88 + . . scaffold1832 GLEAN mRNA 37662 78050 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 37804 37842 78 + . . scaffold1832 TRF Tandem_Repeat 38748 39411 333 + . . scaffold1832 TRF Tandem_Repeat 40877 40973 63 + . . scaffold1832 TRF Tandem_Repeat 40877 40973 90 + . . scaffold1832 TRF Tandem_Repeat 44404 44641 221 + . . scaffold1832 TRF Tandem_Repeat 49596 49636 55 + . . scaffold1832 TRF Tandem_Repeat 61161 61949 965 + . . scaffold1832 TRF Tandem_Repeat 62102 62132 53 + . . scaffold1832 TRF Tandem_Repeat 62908 62975 70 + . . scaffold1832 TRF Tandem_Repeat 62908 62975 63 + . . scaffold1832 TRF Tandem_Repeat 65890 66912 791 + . . scaffold1832 TRF Tandem_Repeat 73256 73325 131 + . . scaffold1832 TRF Tandem_Repeat 73259 73327 84 + . . scaffold1832 TRF Tandem_Repeat 75133 75172 80 + . . scaffold1832 GLEAN promoter 78051 79050 0.575071 - . ID=CGI_10018465; scaffold1832 TRF Tandem_Repeat 79134 79197 128 + . . scaffold1832 TRF Tandem_Repeat 88372 88469 123 + . . scaffold1832 GLEAN mRNA 88825 91329 0.99678 - . ID=CGI_10018466; scaffold1832 GLEAN promoter 91330 92329 0.99678 - . ID=CGI_10018466; scaffold1832 TRF Tandem_Repeat 93264 93342 158 + . . scaffold1832 TRF Tandem_Repeat 93713 93749 74 + . . scaffold1832 TRF Tandem_Repeat 94945 95056 128 + . . scaffold1832 TRF Tandem_Repeat 96051 96099 89 + . . scaffold1832 TRF Tandem_Repeat 102994 103063 140 + . . scaffold1832 TRF Tandem_Repeat 103844 103870 54 + . . scaffold1832 TRF Tandem_Repeat 103899 103959 122 + . . scaffold1832 TRF Tandem_Repeat 104589 104646 116 + . . scaffold1832 TRF Tandem_Repeat 107391 107416 52 + . . scaffold1832 TRF Tandem_Repeat 115240 115293 108 + . . scaffold1832 TRF Tandem_Repeat 118340 118387 52 + . . scaffold1832 TRF Tandem_Repeat 120917 120956 80 + . . scaffold1832 TRF Tandem_Repeat 127138 127200 126 + . . scaffold1832 TRF Tandem_Repeat 127853 127912 120 + . . scaffold1832 TRF Tandem_Repeat 127949 127990 68 + . . scaffold1832 TRF Tandem_Repeat 131361 131436 136 + . . scaffold1832 TRF Tandem_Repeat 137178 137845 479 + . . scaffold1832 TRF Tandem_Repeat 137178 137845 541 + . . scaffold1832 TRF Tandem_Repeat 138695 139390 508 + . . scaffold1832 TRF Tandem_Repeat 138695 139390 570 + . . scaffold1832 TRF Tandem_Repeat 140240 140935 508 + . . scaffold1832 TRF Tandem_Repeat 140240 140935 570 + . . scaffold1832 TRF Tandem_Repeat 142112 142508 454 + . . scaffold1832 TRF Tandem_Repeat 146248 146378 147 + . . scaffold1832 TRF Tandem_Repeat 148811 148846 72 + . . scaffold1832 TRF Tandem_Repeat 148899 148923 50 + . . scaffold1832 TRF Tandem_Repeat 150311 150355 54 + . . scaffold1832 GLEAN promoter 157325 158324 0.931923 + . ID=CGI_10018467; scaffold1832 GLEAN mRNA 158325 163224 0.931923 + . ID=CGI_10018467; scaffold1832 WUBlastX DNA_Sola 158678 158839 58 - . . scaffold1832 TRF Tandem_Repeat 163493 163899 297 + . . scaffold1832 WUBlastX RC_Helitron 167074 168171 177 - . . scaffold1832 WUBlastX LINE_Penelope 192402 192548 47 - . . scaffold1832 WUBlastX DNA_En-Spm 198195 198536 46 - . . scaffold1832 GLEAN mRNA 198351 200947 0.999463 - . ID=CGI_10018468; scaffold1832 WUBlastX DNA_En-Spm 198577 198837 53 - . . scaffold1832 GLEAN promoter 200948 201947 0.999463 - . ID=CGI_10018468; scaffold1832 WUBlastX DNA_Maverick 205250 205438 78 + . . scaffold1832 TRF Tandem_Repeat 207700 207724 50 + . . scaffold1832 GLEAN mRNA 208019 210157 0.999949 - . ID=CGI_10018469; scaffold1832 WUBlastX DNA_Maverick 209107 209364 54 - . . scaffold1832 WUBlastX DNA_Maverick 209116 209256 79 - . . scaffold1832 WUBlastX DNA_Maverick 209116 209334 66 - . . scaffold1832 GLEAN promoter 210158 211157 0.999949 - . ID=CGI_10018469; scaffold1832 GLEAN promoter 212318 213317 0.602877 + . ID=CGI_10018470; scaffold1832 TRF Tandem_Repeat 212883 212935 106 + . . scaffold1832 GLEAN mRNA 213318 215064 0.602877 + . ID=CGI_10018470; scaffold1832 GLEAN promoter 228484 229483 0.999676 + . ID=CGI_10018471; scaffold1832 GLEAN mRNA 229484 233533 0.999676 + . ID=CGI_10018471; scaffold1832 TRF Tandem_Repeat 234655 234699 90 + . . scaffold1832 GLEAN mRNA 243879 247603 1 - . ID=CGI_10018472; scaffold1832 GLEAN promoter 247604 248603 1 - . ID=CGI_10018472; scaffold1832 GLEAN mRNA 259783 288741 0.670728 - . ID=CGI_10018473; scaffold1832 TRF Tandem_Repeat 269641 270344 897 + . . scaffold1832 TRF Tandem_Repeat 274869 274913 72 + . . scaffold1832 TRF Tandem_Repeat 277449 277498 100 + . . scaffold1832 TRF Tandem_Repeat 278757 278802 56 + . . scaffold1832 GLEAN promoter 288742 289741 0.670728 - . ID=CGI_10018473; scaffold1832 WUBlastX DNA_hAT 293010 293150 38 + . . scaffold1832 GLEAN promoter 293916 294915 0.423088 + . ID=CGI_10018474; scaffold1832 WUBlastX DNA_hAT 294043 294147 28 + . . scaffold1832 WUBlastX DNA_hAT 294759 294911 33 + . . scaffold1832 GLEAN mRNA 294916 299901 0.423088 + . ID=CGI_10018474; scaffold1832 TRF Tandem_Repeat 298246 298270 50 + . . scaffold1832 WUBlastX LINE_RTE-X 301714 301908 45 - . . scaffold1832 WUBlastX LINE_RTE-X 301759 301908 73 - . . scaffold1832 GLEAN promoter 303750 304749 1 + . ID=CGI_10018475; scaffold1832 WUBlastX LINE_RTE-X 303843 304175 29 - . . scaffold1832 WUBlastX LINE_RTE-X 303999 304175 71 - . . scaffold1832 GLEAN mRNA 304750 307228 1 + . ID=CGI_10018475; scaffold1832 TRF Tandem_Repeat 308136 308427 291 + . . scaffold1832 TRF Tandem_Repeat 308140 308429 228 + . . scaffold1832 TRF Tandem_Repeat 308434 308539 115 + . . scaffold1832 GLEAN mRNA 310481 315535 0.996652 - . ID=CGI_10018476; scaffold1832 GLEAN promoter 315536 316535 0.996652 - . ID=CGI_10018476; scaffold1832 TRF Tandem_Repeat 315552 315771 337 + . . scaffold1832 GLEAN mRNA 315804 318807 1 - . ID=CGI_10018477; scaffold1832 GLEAN promoter 318808 319807 1 - . ID=CGI_10018477; scaffold1832 TRF Tandem_Repeat 324154 324186 50 + . . scaffold1832 GLEAN promoter 328015 329014 0.923451 + . ID=CGI_10018478; scaffold1832 GLEAN mRNA 329015 334644 0.923451 + . ID=CGI_10018478; scaffold1832 WUBlastX LINE_L2 329912 330151 48 + . . scaffold1832 TRF Tandem_Repeat 330457 330491 70 + . . scaffold1832 TRF Tandem_Repeat 333352 333409 80 + . . scaffold1832 GLEAN promoter 334596 335595 0.988959 + . ID=CGI_10018479; scaffold1832 GLEAN mRNA 335596 339029 0.988959 + . ID=CGI_10018479; scaffold1832 GLEAN promoter 339525 340524 1 + . ID=CGI_10018480; scaffold1832 GLEAN mRNA 340525 343771 1 + . ID=CGI_10018480; scaffold1832 TRF Tandem_Repeat 349784 349849 132 + . . scaffold1832 TRF Tandem_Repeat 354324 354362 78 + . . scaffold1832 GLEAN mRNA 360620 360820 1 - . ID=CGI_10018481; scaffold1832 GLEAN promoter 360821 361820 1 - . ID=CGI_10018481; scaffold1832 TRF Tandem_Repeat 379001 379028 56 + . . scaffold1832 TRF Tandem_Repeat 384126 385030 1168 + . . scaffold1832 WUBlastX LINE_RTE-X 389128 390144 147 - . . scaffold1832 WUBlastX LINE_RTE-X 389233 390060 171 - . . scaffold1832 WUBlastX LINE_Proto2 389551 390279 62 - . . scaffold1832 WUBlastX LINE_RTE-BovB 390272 390745 110 - . . scaffold1832 WUBlastX LINE_RTE-X 390278 390559 131 - . . scaffold1832 WUBlastX LINE_RTE-X 390278 390910 43 - . . scaffold1832 WUBlastX LINE_I-Nimb 390786 391193 24 - . . scaffold1832 WUBlastX LINE_CR1 391255 391509 22 - . . scaffold1832 WUBlastX DNA_Merlin 394872 395147 96 + . . scaffold1832 WUBlastX DNA_Merlin 394872 395300 84 + . . scaffold1832 WUBlastX DNA_Harbinger 397404 397706 28 + . . scaffold1832 WUBlastX DNA_Harbinger 397473 397754 35 + . . scaffold1832 WUBlastX DNA_Harbinger 397482 397715 60 + . . scaffold1832 WUBlastX DNA_Harbinger 398045 398149 35 + . . scaffold1832 WUBlastX DNA_Harbinger 398329 398568 36 + . . scaffold1832 WUBlastX DNA_Harbinger 398377 398943 70 + . . scaffold1832 WUBlastX DNA_Harbinger 398380 398778 182 + . . scaffold1832 WUBlastX DNA_Harbinger 398512 398844 98 + . . scaffold1832 TRF Tandem_Repeat 400160 400198 71 + . . scaffold1832 WUBlastX DNA_IS4EU 403175 403885 252 + . . scaffold1832 WUBlastX DNA_IS4EU 404699 405361 39 - . . scaffold1832 WUBlastX DNA_IS4EU 404780 405268 236 - . . scaffold1832 TRF Tandem_Repeat 408420 408453 52 + . . scaffold1832 GLEAN mRNA 439809 444830 0.993906 - . ID=CGI_10018482; scaffold1832 GLEAN promoter 444831 445830 0.993906 - . ID=CGI_10018482; scaffold1832 GLEAN promoter 445318 446317 0.843871 + . ID=CGI_10018484; scaffold1832 GLEAN mRNA 445540 450115 0.614012 - . ID=CGI_10018483; scaffold1832 GLEAN mRNA 446318 453844 0.843871 + . ID=CGI_10018484; scaffold1832 GLEAN promoter 450116 451115 0.614012 - . ID=CGI_10018483; scaffold1832 TRF Tandem_Repeat 450554 451215 788 + . . scaffold1832 TRF Tandem_Repeat 450554 451215 932 + . . scaffold1832 GLEAN mRNA 456537 464977 1 - . ID=CGI_10018485; scaffold1832 GLEAN promoter 464937 465936 0.955763 + . ID=CGI_10018486; scaffold1832 GLEAN promoter 464978 465977 1 - . ID=CGI_10018485; scaffold1832 GLEAN mRNA 465937 468592 0.955763 + . ID=CGI_10018486; scaffold1832 TRF Tandem_Repeat 467493 467518 52 + . . scaffold1832 GLEAN mRNA 472845 482421 0.999998 - . ID=CGI_10018487; scaffold1832 TRF Tandem_Repeat 477421 477648 343 + . . scaffold1832 GLEAN promoter 481971 482970 1 + . ID=CGI_10018488; scaffold1832 GLEAN promoter 482422 483421 0.999998 - . ID=CGI_10018487; scaffold1832 GLEAN mRNA 482971 484744 1 + . ID=CGI_10018488; scaffold1832 TRF Tandem_Repeat 483392 483435 88 + . . scaffold1832 TRF Tandem_Repeat 483451 483583 162 + . . scaffold1832 TRF Tandem_Repeat 484320 484372 106 + . . scaffold1832 GLEAN mRNA 485330 491585 0.937847 - . ID=CGI_10018489; scaffold1832 GLEAN promoter 488948 489947 0.999675 + . ID=CGI_10018490; scaffold1832 GLEAN mRNA 489948 502773 0.999675 + . ID=CGI_10018490; scaffold1832 GLEAN promoter 491586 492585 0.937847 - . ID=CGI_10018489; scaffold1832 TRF Tandem_Repeat 505313 505399 174 + . . scaffold1832 GLEAN mRNA 507397 512219 1 - . ID=CGI_10018491; scaffold1832 TRF Tandem_Repeat 507586 507641 112 + . . scaffold1832 TRF Tandem_Repeat 509283 509372 162 + . . scaffold1832 GLEAN promoter 512220 513219 1 - . ID=CGI_10018491; scaffold1832 WUBlastX LINE_CR1 515657 516133 24 + . . scaffold1832 WUBlastX LINE_RTE-X 515732 516757 272 + . . scaffold1832 GLEAN promoter 518429 519428 0.777767 + . ID=CGI_10018492; scaffold1832 GLEAN mRNA 519429 520490 0.777767 + . ID=CGI_10018492; scaffold1832 WUBlastX LINE_L2 546275 547114 61 - . . scaffold1832 WUBlastX LINE_CR1-L2 546485 547120 67 - . . scaffold1832 WUBlastX LINE_CR1-L2 546560 547093 133 - . . scaffold1832 WUBlastX LINE_CR1 547138 547353 20 - . . scaffold1832 WUBlastX LINE_L2 547179 547547 49 - . . scaffold1832 WUBlastX LINE_CR1 547236 547643 62 - . . scaffold1832 WUBlastX LINE_CR1-L2 547236 547553 97 - . . scaffold1832 WUBlastX LINE_L2 548993 549127 48 - . . scaffold1833 TRF Tandem_Repeat 1102 1178 154 + . . scaffold1833 TRF Tandem_Repeat 3168 3211 54 + . . scaffold1833 TRF Tandem_Repeat 4235 4346 75 + . . scaffold1833 WUBlastX LINE_RTE-X 13359 14330 491 - . . scaffold1833 WUBlastX LINE_RTE-X 14324 14467 77 - . . scaffold1833 WUBlastX LINE_RTE-X 14470 14940 267 - . . scaffold1833 WUBlastX LINE_RTE-X 14918 15313 277 - . . scaffold1833 WUBlastX LINE_L2 15107 15358 34 - . . scaffold1833 TRF Tandem_Repeat 15364 15434 124 + . . scaffold1833 TRF Tandem_Repeat 15364 15430 89 + . . scaffold1833 TRF Tandem_Repeat 15446 16103 884 + . . scaffold1833 WUBlastX LINE_RTE-X 16239 16655 145 - . . scaffold1833 WUBlastX LINE_RTE-X 16921 17985 585 - . . scaffold1833 GLEAN mRNA 17986 18591 0.776794 - . ID=CGI_10007297; scaffold1833 WUBlastX LINE_RTE-X 18040 18675 195 - . . scaffold1833 GLEAN promoter 18592 19591 0.776794 - . ID=CGI_10007297; scaffold1833 GLEAN mRNA 18617 28551 1 - . ID=CGI_10007298; scaffold1833 TRF Tandem_Repeat 20582 20648 70 + . . scaffold1833 TRF Tandem_Repeat 24294 24350 114 + . . scaffold1833 TRF Tandem_Repeat 27343 27493 125 + . . scaffold1833 GLEAN promoter 28552 29551 1 - . ID=CGI_10007298; scaffold1833 GLEAN promoter 39439 40438 0.99915 + . ID=CGI_10007299; scaffold1833 GLEAN mRNA 40439 48608 0.99915 + . ID=CGI_10007299; scaffold1833 TRF Tandem_Repeat 43874 43936 126 + . . scaffold1833 GLEAN promoter 48110 49109 0.917044 + . ID=CGI_10007300; scaffold1833 GLEAN mRNA 49110 69658 0.917044 + . ID=CGI_10007300; scaffold1833 TRF Tandem_Repeat 56015 56165 100 + . . scaffold1833 TRF Tandem_Repeat 57544 57612 138 + . . scaffold1833 WUBlastX LINE_L1 57902 58120 42 - . . scaffold1833 WUBlastX RC_Helitron 60844 61527 36 + . . scaffold1833 WUBlastX RC_Helitron 60976 63237 349 + . . scaffold1833 WUBlastX RC_Helitron 61726 63102 363 + . . scaffold1833 WUBlastX RC_Helitron 62251 68409 3041 + . . scaffold1833 WUBlastX LTR_Gypsy 91215 91373 30 - . . scaffold1833 WUBlastX LTR_Gypsy 91272 92759 401 - . . scaffold1833 WUBlastX LTR_Gypsy 91551 93554 382 - . . scaffold1833 WUBlastX LTR_Gypsy 93503 94156 541 - . . scaffold1833 WUBlastX LTR_Gypsy 94156 94383 92 - . . scaffold1833 WUBlastX LTR_Gypsy-Cigr 94174 94428 72 - . . scaffold1833 WUBlastX LTR_Gypsy 94437 94970 21 - . . scaffold1833 WUBlastX LTR_Gypsy 94632 94850 25 - . . scaffold1833 WUBlastX LTR_Gypsy 94776 95054 49 - . . scaffold1833 WUBlastX LTR_Gypsy 95060 95122 21 - . . scaffold1833 WUBlastX LTR_Gypsy 95754 96299 34 - . . scaffold1833 WUBlastX DNA_TcMar-Pogo 96494 97099 285 + . . scaffold1833 WUBlastX DNA_TcMar-Pogo 97065 97274 81 + . . scaffold1833 WUBlastX DNA_TcMar-Pogo 97086 97352 60 + . . scaffold1833 TRF Tandem_Repeat 126239 126280 84 + . . scaffold1833 GLEAN mRNA 131773 158677 0.286477 - . ID=CGI_10007301; scaffold1833 TRF Tandem_Repeat 132895 132944 75 + . . scaffold1833 TRF Tandem_Repeat 143389 143422 50 + . . scaffold1833 TRF Tandem_Repeat 150498 150558 115 + . . scaffold1833 TRF Tandem_Repeat 157573 157678 133 + . . scaffold1833 GLEAN promoter 158678 159677 0.286477 - . ID=CGI_10007301; scaffold1833 TRF Tandem_Repeat 166409 166515 142 + . . scaffold1833 TRF Tandem_Repeat 168121 168210 99 + . . scaffold1833 TRF Tandem_Repeat 168176 168266 119 + . . scaffold1833 TRF Tandem_Repeat 169271 169308 76 + . . scaffold1833 WUBlastX DNA_Academ 174720 175958 160 + . . scaffold1833 WUBlastX DNA_Academ 174993 175949 243 + . . scaffold1834 TRF Tandem_Repeat 4446 4557 197 + . . scaffold1834 TRF Tandem_Repeat 6546 9223 1482 + . . scaffold1834 TRF Tandem_Repeat 6561 9247 574 + . . scaffold1834 TRF Tandem_Repeat 6578 9562 866 + . . scaffold1834 TRF Tandem_Repeat 6762 6967 79 + . . scaffold1834 TRF Tandem_Repeat 6791 6921 82 + . . scaffold1834 TRF Tandem_Repeat 7745 8343 746 + . . scaffold1834 TRF Tandem_Repeat 9313 9963 214 + . . scaffold1834 TRF Tandem_Repeat 17810 17871 124 + . . scaffold1834 GLEAN mRNA 18492 32749 0.870346 - . ID=CGI_10016650; scaffold1834 GLEAN promoter 32750 33749 0.870346 - . ID=CGI_10016650; scaffold1834 TRF Tandem_Repeat 33011 33041 55 + . . scaffold1834 GLEAN promoter 39709 40708 0.846288 + . ID=CGI_10016651; scaffold1834 GLEAN mRNA 40709 65850 0.846288 + . ID=CGI_10016651; scaffold1834 WUBlastX LINE_L1-Tx1 42120 42260 77 + . . scaffold1834 WUBlastX LINE_L1 42165 42383 61 + . . scaffold1834 WUBlastX LINE_L1-Tx1 42704 42802 24 + . . scaffold1834 TRF Tandem_Repeat 59063 60803 1921 + . . scaffold1834 TRF Tandem_Repeat 62849 63579 782 + . . scaffold1834 TRF Tandem_Repeat 62874 63580 958 + . . scaffold1834 TRF Tandem_Repeat 62874 63580 961 + . . scaffold1834 GLEAN promoter 65245 66244 0.910556 + . ID=CGI_10016652; scaffold1834 GLEAN mRNA 66245 83176 0.910556 + . ID=CGI_10016652; scaffold1834 TRF Tandem_Repeat 92716 92978 278 + . . scaffold1834 TRF Tandem_Repeat 96978 97051 148 + . . scaffold1834 TRF Tandem_Repeat 97146 97242 58 + . . scaffold1834 TRF Tandem_Repeat 97178 97257 78 + . . scaffold1834 TRF Tandem_Repeat 97181 97259 67 + . . scaffold1834 TRF Tandem_Repeat 107052 107100 80 + . . scaffold1834 TRF Tandem_Repeat 108573 108862 465 + . . scaffold1834 TRF Tandem_Repeat 108710 108798 58 + . . scaffold1834 TRF Tandem_Repeat 108830 108963 67 + . . scaffold1834 TRF Tandem_Repeat 110296 110333 76 + . . scaffold1834 GLEAN promoter 111219 112218 0.993248 + . ID=CGI_10016653; scaffold1834 TRF Tandem_Repeat 111346 111402 105 + . . scaffold1834 GLEAN mRNA 112219 123253 0.993248 + . ID=CGI_10016653; scaffold1834 GLEAN promoter 129120 130119 0.650883 + . ID=CGI_10016656; scaffold1834 GLEAN mRNA 130120 144480 0.650883 + . ID=CGI_10016656; scaffold1834 TRF Tandem_Repeat 137888 137930 86 + . . scaffold1834 TRF Tandem_Repeat 156929 157036 189 + . . scaffold1834 GLEAN mRNA 168520 187083 0.812486 - . ID=CGI_10016657; scaffold1834 GLEAN promoter 186623 187622 0.374762 + . ID=CGI_10016658; scaffold1834 TRF Tandem_Repeat 186660 186691 64 + . . scaffold1834 GLEAN promoter 187084 188083 0.812486 - . ID=CGI_10016657; scaffold1834 GLEAN mRNA 187623 216470 0.374762 + . ID=CGI_10016658; scaffold1834 WUBlastX DNA_MuDR 190370 191512 30 + . . scaffold1834 WUBlastX DNA_MuDR 190784 191104 45 + . . scaffold1834 GLEAN mRNA 202783 204801 0.999662 - . ID=CGI_10016659; scaffold1834 GLEAN promoter 204802 205801 0.999662 - . ID=CGI_10016659; scaffold1834 TRF Tandem_Repeat 219811 219851 82 + . . scaffold1834 GLEAN promoter 223382 224381 0.478542 + . ID=CGI_10016660; scaffold1834 GLEAN mRNA 224382 229636 0.478542 + . ID=CGI_10016660; scaffold1834 TRF Tandem_Repeat 224542 224582 82 + . . scaffold1834 GLEAN mRNA 232115 232586 0.392102 - . ID=CGI_10016661; scaffold1834 GLEAN promoter 232587 233586 0.392102 - . ID=CGI_10016661; scaffold1834 GLEAN mRNA 233320 247930 0.758059 - . ID=CGI_10016662; scaffold1834 GLEAN promoter 247931 248930 0.758059 - . ID=CGI_10016662; scaffold1834 GLEAN promoter 261982 262981 0.44289 + . ID=CGI_10016663; scaffold1834 GLEAN mRNA 262982 289312 0.44289 + . ID=CGI_10016663; scaffold1834 GLEAN mRNA 293919 300357 0.999116 - . ID=CGI_10016664; scaffold1834 GLEAN promoter 300358 301357 0.999116 - . ID=CGI_10016664; scaffold1834 TRF Tandem_Repeat 303246 303303 109 + . . scaffold1834 GLEAN mRNA 305769 307242 1 - . ID=CGI_10016665; scaffold1834 GLEAN promoter 305985 306984 0.776639 + . ID=CGI_10016666; scaffold1834 GLEAN mRNA 306985 307188 0.776639 + . ID=CGI_10016666; scaffold1834 GLEAN promoter 307243 308242 1 - . ID=CGI_10016665; scaffold1834 GLEAN promoter 307259 308258 1 + . ID=CGI_10016667; scaffold1834 GLEAN mRNA 308259 312379 1 + . ID=CGI_10016667; scaffold1834 TRF Tandem_Repeat 311020 311134 135 + . . scaffold1834 TRF Tandem_Repeat 311948 312110 150 + . . scaffold1834 GLEAN promoter 313036 314035 0.99534 + . ID=CGI_10016668; scaffold1834 GLEAN mRNA 314036 316422 0.99534 + . ID=CGI_10016668; scaffold1834 TRF Tandem_Repeat 316041 316093 106 + . . scaffold1834 TRF Tandem_Repeat 316432 316577 222 + . . scaffold1834 TRF Tandem_Repeat 317704 317736 57 + . . scaffold1834 TRF Tandem_Repeat 317732 317774 68 + . . scaffold1834 GLEAN promoter 319020 320019 0.899169 + . ID=CGI_10016669; scaffold1834 GLEAN mRNA 320020 322014 0.899169 + . ID=CGI_10016669; scaffold1834 GLEAN mRNA 325426 329639 0.971681 - . ID=CGI_10016670; scaffold1834 TRF Tandem_Repeat 328685 328734 100 + . . scaffold1834 GLEAN promoter 329640 330639 0.971681 - . ID=CGI_10016670; scaffold1834 TRF Tandem_Repeat 330199 330247 91 + . . scaffold1834 TRF Tandem_Repeat 331177 331203 54 + . . scaffold1834 TRF Tandem_Repeat 334272 334375 172 + . . scaffold1834 GLEAN promoter 334411 335410 0.985574 + . ID=CGI_10016672; scaffold1834 GLEAN mRNA 334933 337300 0.638665 - . ID=CGI_10016671; scaffold1834 GLEAN mRNA 335411 346194 0.985574 + . ID=CGI_10016672; scaffold1834 GLEAN promoter 337301 338300 0.638665 - . ID=CGI_10016671; scaffold1834 TRF Tandem_Repeat 338970 339007 67 + . . scaffold1834 TRF Tandem_Repeat 345797 345835 62 + . . scaffold1834 GLEAN mRNA 353097 381251 0.999632 - . ID=CGI_10016673; scaffold1834 GLEAN promoter 381252 382251 0.999632 - . ID=CGI_10016673; scaffold1834 TRF Tandem_Repeat 390593 390633 82 + . . scaffold1834 TRF Tandem_Repeat 393591 393868 274 + . . scaffold1834 GLEAN promoter 394827 395826 0.618241 + . ID=CGI_10016674; scaffold1834 GLEAN mRNA 395827 396060 0.618241 + . ID=CGI_10016674; scaffold1834 TRF Tandem_Repeat 399101 399151 93 + . . scaffold1834 GLEAN promoter 433329 434328 1 + . ID=CGI_10016675; scaffold1834 GLEAN mRNA 434329 440982 1 + . ID=CGI_10016675; scaffold1834 TRF Tandem_Repeat 450586 450768 180 + . . scaffold1834 WUBlastX LINE_L1-Tx1 456971 457513 90 + . . scaffold1834 TRF Tandem_Repeat 457564 457596 57 + . . scaffold1834 TRF Tandem_Repeat 458123 458191 138 + . . scaffold1834 WUBlastX LINE_L2 458966 459358 44 + . . scaffold1834 WUBlastX LINE_CR1-L2 459035 459355 161 + . . scaffold1834 WUBlastX LINE_L2 459367 460368 59 + . . scaffold1834 WUBlastX LINE_CR1-L2 459385 460110 155 + . . scaffold1834 WUBlastX LINE_CR1-L2 461088 461759 402 + . . scaffold1834 WUBlastX LINE_CR1-L2 461145 461708 418 + . . scaffold1834 WUBlastX LINE_L2 461674 461796 74 + . . scaffold1834 WUBlastX LINE_L2 462405 462815 70 + . . scaffold1834 WUBlastX LINE_CR1-L2 462526 463494 105 + . . scaffold1834 WUBlastX LINE_CR1-L2 462806 463096 132 + . . scaffold1834 TRF Tandem_Repeat 466929 466976 96 + . . scaffold1834 GLEAN mRNA 472812 473980 0.999668 - . ID=CGI_10016676; scaffold1834 GLEAN promoter 473981 474980 0.999668 - . ID=CGI_10016676; scaffold1834 WUBlastX DNA_Kolobok-Hyd 474117 474902 51 - . . scaffold1834 WUBlastX DNA_IS4EU 474159 474821 58 - . . scaffold1834 WUBlastX DNA_Kolobok-Hyd 474564 474962 21 - . . scaffold1834 WUBlastX DNA_Kolobok-Hyd 475190 475258 32 - . . scaffold1835 GLEAN promoter 1172 2171 0.999221 + . ID=CGI_10015176; scaffold1835 GLEAN mRNA 2172 12851 0.999221 + . ID=CGI_10015176; scaffold1835 TRF Tandem_Repeat 12075 12113 78 + . . scaffold1835 GLEAN mRNA 15716 22734 0.967023 - . ID=CGI_10015177; scaffold1835 TRF Tandem_Repeat 16825 17225 457 + . . scaffold1835 TRF Tandem_Repeat 19617 19689 137 + . . scaffold1835 GLEAN promoter 22735 23734 0.967023 - . ID=CGI_10015177; scaffold1835 TRF Tandem_Repeat 31557 31643 88 + . . scaffold1835 TRF Tandem_Repeat 31729 31861 151 + . . scaffold1835 TRF Tandem_Repeat 31900 32045 150 + . . scaffold1835 TRF Tandem_Repeat 34022 34094 137 + . . scaffold1835 TRF Tandem_Repeat 34687 34836 149 + . . scaffold1835 TRF Tandem_Repeat 34839 34986 116 + . . scaffold1835 TRF Tandem_Repeat 35269 35479 99 + . . scaffold1835 TRF Tandem_Repeat 35478 35626 133 + . . scaffold1835 TRF Tandem_Repeat 35739 35864 146 + . . scaffold1835 TRF Tandem_Repeat 35740 35948 143 + . . scaffold1835 TRF Tandem_Repeat 35957 36084 121 + . . scaffold1835 TRF Tandem_Repeat 38342 38371 51 + . . scaffold1835 GLEAN mRNA 39001 40500 0.999984 - . ID=CGI_10015178; scaffold1835 GLEAN promoter 40501 41500 0.999984 - . ID=CGI_10015178; scaffold1835 GLEAN promoter 42963 43962 0.832158 + . ID=CGI_10015179; scaffold1835 GLEAN mRNA 43963 56733 0.832158 + . ID=CGI_10015179; scaffold1835 TRF Tandem_Repeat 57640 58381 1035 + . . scaffold1835 GLEAN mRNA 60748 81085 0.889602 - . ID=CGI_10015180; scaffold1835 TRF Tandem_Repeat 68929 68984 112 + . . scaffold1835 TRF Tandem_Repeat 73146 73265 195 + . . scaffold1835 TRF Tandem_Repeat 80445 80507 126 + . . scaffold1835 GLEAN promoter 81086 82085 0.889602 - . ID=CGI_10015180; scaffold1835 TRF Tandem_Repeat 81468 81536 102 + . . scaffold1835 GLEAN promoter 81694 82693 0.622693 + . ID=CGI_10015181; scaffold1835 GLEAN mRNA 82694 98332 0.622693 + . ID=CGI_10015181; scaffold1835 TRF Tandem_Repeat 86550 86609 120 + . . scaffold1835 TRF Tandem_Repeat 90544 90587 88 + . . scaffold1835 TRF Tandem_Repeat 99729 99787 118 + . . scaffold1835 GLEAN promoter 102729 103728 0.993575 + . ID=CGI_10015182; scaffold1835 GLEAN mRNA 103729 123658 0.993575 + . ID=CGI_10015182; scaffold1835 TRF Tandem_Repeat 117201 117248 69 + . . scaffold1835 GLEAN promoter 123947 124946 0.981821 + . ID=CGI_10015183; scaffold1835 GLEAN mRNA 124947 147613 0.981821 + . ID=CGI_10015183; scaffold1835 TRF Tandem_Repeat 131878 132304 423 + . . scaffold1835 TRF Tandem_Repeat 131878 132159 422 + . . scaffold1835 GLEAN mRNA 141720 155266 0.999676 - . ID=CGI_10015184; scaffold1835 TRF Tandem_Repeat 153811 154141 662 + . . scaffold1835 GLEAN promoter 155267 156266 0.999676 - . ID=CGI_10015184; scaffold1835 GLEAN promoter 163361 164360 1 + . ID=CGI_10015185; scaffold1835 GLEAN mRNA 164361 172371 1 + . ID=CGI_10015185; scaffold1835 TRF Tandem_Repeat 168015 168075 113 + . . scaffold1835 TRF Tandem_Repeat 169459 169503 81 + . . scaffold1835 GLEAN mRNA 174659 178727 0.999637 - . ID=CGI_10015186; scaffold1835 GLEAN promoter 178728 179727 0.999637 - . ID=CGI_10015186; scaffold1835 TRF Tandem_Repeat 184694 184722 58 + . . scaffold1835 TRF Tandem_Repeat 184786 184824 78 + . . scaffold1835 TRF Tandem_Repeat 197438 197480 86 + . . scaffold1835 GLEAN mRNA 208561 218311 0.99999 - . ID=CGI_10015187; scaffold1835 GLEAN promoter 218312 219311 0.99999 - . ID=CGI_10015187; scaffold1835 TRF Tandem_Repeat 221346 221379 68 + . . scaffold1835 TRF Tandem_Repeat 236866 236899 50 + . . scaffold1835 GLEAN promoter 257787 258786 1 + . ID=CGI_10015188; scaffold1835 GLEAN mRNA 258787 265942 1 + . ID=CGI_10015188; scaffold1835 TRF Tandem_Repeat 264961 265309 332 + . . scaffold1835 TRF Tandem_Repeat 264961 265309 334 + . . scaffold1835 GLEAN mRNA 268502 284662 0.999676 - . ID=CGI_10015189; scaffold1835 TRF Tandem_Repeat 270478 270521 52 + . . scaffold1835 GLEAN promoter 284292 285291 0.937738 + . ID=CGI_10015190; scaffold1835 GLEAN promoter 284663 285662 0.999676 - . ID=CGI_10015189; scaffold1835 GLEAN mRNA 285292 297355 0.937738 + . ID=CGI_10015190; scaffold1835 GLEAN mRNA 302121 303982 0.593391 - . ID=CGI_10015191; scaffold1835 TRF Tandem_Repeat 302949 302995 94 + . . scaffold1835 GLEAN promoter 303983 304982 0.593391 - . ID=CGI_10015191; scaffold1835 WUBlastX LINE_RTE-BovB 308120 309073 312 - . . scaffold1835 WUBlastX LINE_RTE-BovB 316150 316437 71 + . . scaffold1835 WUBlastX LINE_RTE-BovB 316240 316566 119 + . . scaffold1835 WUBlastX LINE_RTE-BovB 317322 317636 170 + . . scaffold1835 TRF Tandem_Repeat 341604 341658 60 + . . scaffold1835 TRF Tandem_Repeat 341609 341660 52 + . . scaffold1835 TRF Tandem_Repeat 342729 342909 308 + . . scaffold1835 TRF Tandem_Repeat 342757 342906 72 + . . scaffold1835 GLEAN mRNA 344244 346616 0.937838 - . ID=CGI_10015192; scaffold1835 GLEAN promoter 346617 347616 0.937838 - . ID=CGI_10015192; scaffold1835 TRF Tandem_Repeat 357883 357907 50 + . . scaffold1835 TRF Tandem_Repeat 362637 362675 78 + . . scaffold1835 TRF Tandem_Repeat 368156 368202 94 + . . scaffold1835 TRF Tandem_Repeat 369142 369185 88 + . . scaffold1835 GLEAN mRNA 374701 375318 1 - . ID=CGI_10015193; scaffold1835 GLEAN promoter 375319 376318 1 - . ID=CGI_10015193; scaffold1835 GLEAN mRNA 376025 381999 0.999671 - . ID=CGI_10015194; scaffold1835 WUBlastX DNA_hAT-Blackja 379070 379402 90 - . . scaffold1835 WUBlastX DNA_hAT-Blackja 379363 379521 41 - . . scaffold1835 GLEAN promoter 382000 382999 0.999671 - . ID=CGI_10015194; scaffold1835 GLEAN mRNA 385259 393032 1 - . ID=CGI_10015195; scaffold1835 GLEAN promoter 393033 394032 1 - . ID=CGI_10015195; scaffold1835 TRF Tandem_Repeat 397733 397766 52 + . . scaffold1835 WUBlastX LINE_RTE-X 403375 405798 1059 - . . scaffold1835 GLEAN promoter 405059 406058 0.680706 + . ID=CGI_10015196; scaffold1835 GLEAN mRNA 406059 416971 0.680706 + . ID=CGI_10015196; scaffold1835 TRF Tandem_Repeat 417240 417836 167 + . . scaffold1835 TRF Tandem_Repeat 417244 417836 830 + . . scaffold1836 WUBlastX LINE_RTE-X 16291 16512 50 - . . scaffold1836 WUBlastX LINE_RTE-X 16685 16831 38 - . . scaffold1836 WUBlastX LINE_RTE-X 16718 16822 42 - . . scaffold1836 WUBlastX LINE_L1-Tx1 24915 25361 37 + . . scaffold1836 WUBlastX LINE_L1-Tx1 24918 25058 61 + . . scaffold1836 TRF Tandem_Repeat 30500 30549 100 + . . scaffold1836 WUBlastX LINE_L2-Hydra 33069 34688 100 + . . scaffold1836 WUBlastX LINE_I 33870 34793 105 + . . scaffold1836 WUBlastX LINE_Rex-Babar 35484 36464 43 + . . scaffold1836 WUBlastX LINE_Rex-Babar 35640 36464 66 + . . scaffold1836 WUBlastX LINE_Jockey 35787 36488 121 + . . scaffold1836 WUBlastX LINE_RTE-X 35973 36548 172 + . . scaffold1836 WUBlastX LINE_CR1-L2 36024 36494 206 + . . scaffold1836 WUBlastX LINE_L2 36535 37059 105 + . . scaffold1836 WUBlastX LINE_RTE-X 36556 37593 94 + . . scaffold1836 GLEAN promoter 52391 53390 0.733495 + . ID=CGI_10026266; scaffold1836 GLEAN mRNA 53391 53693 0.733495 + . ID=CGI_10026266; scaffold1836 WUBlastX LINE_RTE-X 67283 67603 49 - . . scaffold1836 WUBlastX LINE_RTE-X 67304 67486 51 - . . scaffold1836 TRF Tandem_Repeat 71324 71390 89 + . . scaffold1836 TRF Tandem_Repeat 74568 74634 89 + . . scaffold1836 WUBlastX LINE_L1-Tx1 78101 78436 56 + . . scaffold1836 WUBlastX LINE_L1-Tx1 78161 78493 73 + . . scaffold1836 TRF Tandem_Repeat 97592 97677 84 + . . scaffold1836 GLEAN mRNA 100798 106401 0.9242 - . ID=CGI_10026267; scaffold1836 TRF Tandem_Repeat 103454 103508 110 + . . scaffold1836 TRF Tandem_Repeat 103634 103700 98 + . . scaffold1836 GLEAN promoter 106402 107401 0.9242 - . ID=CGI_10026267; scaffold1836 WUBlastX LINE_RTE-X 107719 107955 51 - . . scaffold1836 WUBlastX LINE_RTE-X 107722 107895 62 - . . scaffold1836 WUBlastX LINE_RTE-X 108132 108245 29 - . . scaffold1836 WUBlastX LINE_L1 111462 111692 26 + . . scaffold1836 WUBlastX LINE_L1 111543 111827 66 + . . scaffold1836 WUBlastX LINE_L1 111758 112291 84 + . . scaffold1836 WUBlastX LINE_L1-Tx1 111860 112393 197 + . . scaffold1836 WUBlastX LINE_L1-Tx1 112438 113028 82 + . . scaffold1836 WUBlastX LINE_L1 112891 113067 47 + . . scaffold1836 TRF Tandem_Repeat 114806 114851 51 + . . scaffold1836 GLEAN promoter 120916 121915 0.992656 + . ID=CGI_10026268; scaffold1836 GLEAN mRNA 121916 127717 0.992656 + . ID=CGI_10026268; scaffold1836 WUBlastX LINE_CR1 126619 127179 198 + . . scaffold1836 WUBlastX LINE_L1-Tx1 127727 128059 44 + . . scaffold1836 WUBlastX LINE_L1-Tx1 127784 128059 97 + . . scaffold1836 WUBlastX LINE_L1 128073 128123 25 + . . scaffold1836 WUBlastX LINE_L1-Tx1 128170 128364 40 + . . scaffold1836 WUBlastX LINE_L1 128400 128948 37 + . . scaffold1836 WUBlastX LINE_L1 128902 129213 52 + . . scaffold1836 WUBlastX LINE_L1-Tx1 128968 129207 60 + . . scaffold1836 TRF Tandem_Repeat 132738 132781 88 + . . scaffold1836 TRF Tandem_Repeat 137395 137445 102 + . . scaffold1836 TRF Tandem_Repeat 141018 141601 898 + . . scaffold1836 TRF Tandem_Repeat 141152 141240 60 + . . scaffold1836 WUBlastX LTR_Pao 142933 145704 1870 - . . scaffold1836 WUBlastX LTR_Pao 145682 148000 1380 - . . scaffold1836 WUBlastX LTR_Pao 145694 148462 1282 - . . scaffold1836 WUBlastX LTR_Pao 148478 148798 33 - . . scaffold1836 WUBlastX LINE_CR1-L2 150112 150387 65 + . . scaffold1836 WUBlastX LINE_CR1-L2 150229 150387 93 + . . scaffold1836 WUBlastX LINE_CR1 150229 150438 59 + . . scaffold1836 WUBlastX LINE_Jockey 150238 150498 22 + . . scaffold1836 WUBlastX LINE_CR1 150535 150705 49 + . . scaffold1836 WUBlastX LINE_CR1 150577 150720 62 + . . scaffold1836 WUBlastX LINE_CR1 150598 150705 66 + . . scaffold1836 WUBlastX LINE_CR1 150724 151287 143 + . . scaffold1836 WUBlastX LINE_L2 150817 151218 248 + . . scaffold1836 WUBlastX LINE_CR1-L2 150820 151293 224 + . . scaffold1836 WUBlastX LINE_L2 150832 151377 69 + . . scaffold1836 WUBlastX LINE_CR1-L2 151278 151469 35 + . . scaffold1836 WUBlastX LINE_CR1-L2 151789 151884 41 + . . scaffold1836 WUBlastX LINE_Tad1? 151792 151905 34 + . . scaffold1836 WUBlastX LINE_RTE-X 154209 154436 36 - . . scaffold1836 WUBlastX LINE_RTE-X 154251 154430 82 - . . scaffold1836 WUBlastX LINE_RTE-X 154260 154487 52 - . . scaffold1836 TRF Tandem_Repeat 155495 155539 90 + . . scaffold1836 TRF Tandem_Repeat 161231 161285 110 + . . scaffold1836 TRF Tandem_Repeat 168638 168687 100 + . . scaffold1836 TRF Tandem_Repeat 173157 173207 102 + . . scaffold1836 GLEAN promoter 180244 181243 0.465891 + . ID=CGI_10026269; scaffold1836 TRF Tandem_Repeat 180394 180421 56 + . . scaffold1836 TRF Tandem_Repeat 180421 180481 122 + . . scaffold1836 GLEAN mRNA 181244 201560 0.465891 + . ID=CGI_10026269; scaffold1836 TRF Tandem_Repeat 204257 204610 514 + . . scaffold1836 TRF Tandem_Repeat 204257 205773 1518 + . . scaffold1836 TRF Tandem_Repeat 204257 205773 2103 + . . scaffold1836 TRF Tandem_Repeat 204615 205773 1698 + . . scaffold1836 TRF Tandem_Repeat 207980 208529 640 + . . scaffold1836 GLEAN promoter 212152 213151 0.998826 + . ID=CGI_10026270; scaffold1836 GLEAN mRNA 213152 217292 0.998826 + . ID=CGI_10026270; scaffold1836 GLEAN promoter 226332 227331 0.733782 + . ID=CGI_10026271; scaffold1836 GLEAN mRNA 227332 235664 0.733782 + . ID=CGI_10026271; scaffold1836 TRF Tandem_Repeat 228084 228240 242 + . . scaffold1836 TRF Tandem_Repeat 231249 231343 64 + . . scaffold1836 TRF Tandem_Repeat 231249 231439 177 + . . scaffold1836 TRF Tandem_Repeat 231249 231440 139 + . . scaffold1836 TRF Tandem_Repeat 231740 231985 87 + . . scaffold1836 TRF Tandem_Repeat 231776 231983 181 + . . scaffold1836 TRF Tandem_Repeat 231776 232166 197 + . . scaffold1836 TRF Tandem_Repeat 232044 232181 161 + . . scaffold1836 TRF Tandem_Repeat 232044 232225 143 + . . scaffold1836 GLEAN promoter 235891 236890 0.995842 + . ID=CGI_10026272; scaffold1836 GLEAN mRNA 236891 239300 0.995842 + . ID=CGI_10026272; scaffold1836 TRF Tandem_Repeat 240730 240759 60 + . . scaffold1836 TRF Tandem_Repeat 243674 243735 124 + . . scaffold1836 GLEAN promoter 246378 247377 0.999415 + . ID=CGI_10026273; scaffold1836 GLEAN mRNA 247378 250088 0.999415 + . ID=CGI_10026273; scaffold1836 GLEAN mRNA 264896 268896 0.999676 - . ID=CGI_10026274; scaffold1836 GLEAN promoter 268897 269896 0.999676 - . ID=CGI_10026274; scaffold1836 GLEAN mRNA 270106 274520 0.999424 - . ID=CGI_10026275; scaffold1836 TRF Tandem_Repeat 271016 271058 86 + . . scaffold1836 TRF Tandem_Repeat 273065 273115 102 + . . scaffold1836 GLEAN promoter 274521 275520 0.999424 - . ID=CGI_10026275; scaffold1836 GLEAN mRNA 275899 278561 0.998726 - . ID=CGI_10026276; scaffold1836 GLEAN promoter 278465 279464 1 + . ID=CGI_10026278; scaffold1836 GLEAN promoter 278562 279561 0.998726 - . ID=CGI_10026276; scaffold1836 GLEAN mRNA 278754 297626 0.814164 - . ID=CGI_10026277; scaffold1836 GLEAN mRNA 279465 284303 1 + . ID=CGI_10026278; scaffold1836 TRF Tandem_Repeat 282082 282127 85 + . . scaffold1836 GLEAN promoter 292444 293443 1 + . ID=CGI_10026279; scaffold1836 GLEAN mRNA 293444 300056 1 + . ID=CGI_10026279; scaffold1836 TRF Tandem_Repeat 294783 295907 1709 + . . scaffold1836 GLEAN promoter 297627 298626 0.814164 - . ID=CGI_10026277; scaffold1836 GLEAN mRNA 308412 312415 1 - . ID=CGI_10026280; scaffold1836 GLEAN promoter 312416 313415 1 - . ID=CGI_10026280; scaffold1836 GLEAN promoter 320556 321555 0.843723 + . ID=CGI_10026281; scaffold1836 GLEAN mRNA 321556 348852 0.843723 + . ID=CGI_10026281; scaffold1836 TRF Tandem_Repeat 325958 326028 76 + . . scaffold1836 TRF Tandem_Repeat 325960 326027 65 + . . scaffold1836 TRF Tandem_Repeat 344484 344509 52 + . . scaffold1836 TRF Tandem_Repeat 345104 345175 137 + . . scaffold1836 TRF Tandem_Repeat 350988 351019 64 + . . scaffold1836 TRF Tandem_Repeat 358908 359043 94 + . . scaffold1836 TRF Tandem_Repeat 360267 360391 124 + . . scaffold1836 TRF Tandem_Repeat 360267 360366 127 + . . scaffold1836 TRF Tandem_Repeat 360282 360409 89 + . . scaffold1836 WUBlastX LTR_Gypsy 361015 361317 90 + . . scaffold1836 WUBlastX LTR_Gypsy 361081 361317 125 + . . scaffold1836 WUBlastX LTR_Gypsy 361141 361317 131 + . . scaffold1836 TRF Tandem_Repeat 361318 361773 382 + . . scaffold1836 TRF Tandem_Repeat 365559 365811 357 + . . scaffold1836 TRF Tandem_Repeat 371373 371448 102 + . . scaffold1836 TRF Tandem_Repeat 371385 371456 101 + . . scaffold1836 TRF Tandem_Repeat 371759 372352 782 + . . scaffold1836 TRF Tandem_Repeat 371759 372352 701 + . . scaffold1836 WUBlastX LTR_DIRS 394143 394730 371 - . . scaffold1836 WUBlastX LINE_RTE-BovB 425718 426176 59 - . . scaffold1836 WUBlastX LINE_RTE-BovB 426561 426839 43 - . . scaffold1836 TRF Tandem_Repeat 427211 427705 528 + . . scaffold1836 TRF Tandem_Repeat 429864 430661 1018 + . . scaffold1836 TRF Tandem_Repeat 429868 430661 974 + . . scaffold1836 GLEAN mRNA 431742 442369 0.999095 - . ID=CGI_10026282; scaffold1836 TRF Tandem_Repeat 432068 432939 721 + . . scaffold1836 TRF Tandem_Repeat 435453 436167 839 + . . scaffold1836 GLEAN promoter 442370 443369 0.999095 - . ID=CGI_10026282; scaffold1836 GLEAN mRNA 443171 444459 1 - . ID=CGI_10026283; scaffold1836 GLEAN promoter 444427 445426 0.999675 + . ID=CGI_10026284; scaffold1836 GLEAN promoter 444460 445459 1 - . ID=CGI_10026283; scaffold1836 GLEAN mRNA 445427 453020 0.999675 + . ID=CGI_10026284; scaffold1836 TRF Tandem_Repeat 446155 446208 74 + . . scaffold1836 TRF Tandem_Repeat 448197 448580 615 + . . scaffold1836 TRF Tandem_Repeat 458716 458784 79 + . . scaffold1836 TRF Tandem_Repeat 467061 467087 54 + . . scaffold1836 GLEAN promoter 467821 468820 1 + . ID=CGI_10026285; scaffold1836 GLEAN mRNA 468821 469777 1 + . ID=CGI_10026285; scaffold1836 GLEAN mRNA 474417 480953 0.997661 - . ID=CGI_10026286; scaffold1836 GLEAN promoter 480954 481953 0.997661 - . ID=CGI_10026286; scaffold1836 GLEAN mRNA 484161 493804 0.987048 - . ID=CGI_10026287; scaffold1836 TRF Tandem_Repeat 485226 485277 104 + . . scaffold1836 TRF Tandem_Repeat 486411 486786 215 + . . scaffold1836 TRF Tandem_Repeat 486411 486789 260 + . . scaffold1836 GLEAN promoter 493805 494804 0.987048 - . ID=CGI_10026287; scaffold1836 GLEAN mRNA 494937 496761 0.999946 - . ID=CGI_10026288; scaffold1836 GLEAN promoter 496762 497761 0.999946 - . ID=CGI_10026288; scaffold1836 GLEAN mRNA 497009 501694 0.593384 - . ID=CGI_10026289; scaffold1836 WUBlastX LINE_Penelope 500753 501217 33 - . . scaffold1836 GLEAN promoter 501695 502694 0.593384 - . ID=CGI_10026289; scaffold1836 GLEAN promoter 502005 503004 1 + . ID=CGI_10026290; scaffold1836 GLEAN mRNA 503005 504112 1 + . ID=CGI_10026290; scaffold1836 GLEAN mRNA 505130 507854 0.999998 - . ID=CGI_10026291; scaffold1836 GLEAN promoter 507855 508854 0.999998 - . ID=CGI_10026291; scaffold1836 GLEAN promoter 509108 510107 0.776636 + . ID=CGI_10026292; scaffold1836 GLEAN mRNA 510108 510272 0.776636 + . ID=CGI_10026292; scaffold1836 TRF Tandem_Repeat 510753 510948 311 + . . scaffold1836 TRF Tandem_Repeat 510753 510948 257 + . . scaffold1836 GLEAN mRNA 512050 518554 0.999985 - . ID=CGI_10026293; scaffold1836 TRF Tandem_Repeat 516826 517424 645 + . . scaffold1836 TRF Tandem_Repeat 516828 517461 654 + . . scaffold1836 TRF Tandem_Repeat 516828 517424 673 + . . scaffold1836 GLEAN promoter 518555 519554 0.999985 - . ID=CGI_10026293; scaffold1836 TRF Tandem_Repeat 526460 526822 238 + . . scaffold1836 TRF Tandem_Repeat 526460 526822 292 + . . scaffold1836 TRF Tandem_Repeat 526595 526769 188 + . . scaffold1836 TRF Tandem_Repeat 529603 529715 84 + . . scaffold1836 TRF Tandem_Repeat 548503 549167 654 + . . scaffold1836 TRF Tandem_Repeat 548504 548980 801 + . . scaffold1836 TRF Tandem_Repeat 548559 549304 349 + . . scaffold1836 TRF Tandem_Repeat 549000 549321 331 + . . scaffold1836 TRF Tandem_Repeat 549461 549861 479 + . . scaffold1836 GLEAN mRNA 552352 568475 0.668028 - . ID=CGI_10026294; scaffold1836 TRF Tandem_Repeat 552646 553102 564 + . . scaffold1836 TRF Tandem_Repeat 552646 553102 587 + . . scaffold1836 TRF Tandem_Repeat 555919 556639 712 + . . scaffold1836 TRF Tandem_Repeat 561440 561580 115 + . . scaffold1836 TRF Tandem_Repeat 565871 567067 1966 + . . scaffold1836 GLEAN promoter 568476 569475 0.668028 - . ID=CGI_10026294; scaffold1836 WUBlastX DNA_TcMar-Tc1 568728 569003 31 + . . scaffold1836 WUBlastX DNA_TcMar-Tc1 568791 569579 61 + . . scaffold1836 WUBlastX DNA_TcMar-Tc1 569576 569851 74 + . . scaffold1836 WUBlastX DNA_TcMar-Tc1 569615 569836 92 + . . scaffold1836 TRF Tandem_Repeat 574398 574433 65 + . . scaffold1836 TRF Tandem_Repeat 583678 584303 689 + . . scaffold1836 TRF Tandem_Repeat 583678 584303 774 + . . scaffold1836 TRF Tandem_Repeat 583678 584303 860 + . . scaffold1836 TRF Tandem_Repeat 583678 584303 779 + . . scaffold1836 GLEAN promoter 601811 602810 0.999993 + . ID=CGI_10026295; scaffold1836 GLEAN mRNA 602811 603932 0.999993 + . ID=CGI_10026295; scaffold1836 GLEAN mRNA 603663 609583 0.998311 - . ID=CGI_10026296; scaffold1836 GLEAN promoter 609584 610583 0.998311 - . ID=CGI_10026296; scaffold1836 TRF Tandem_Repeat 610579 610631 97 + . . scaffold1836 TRF Tandem_Repeat 631028 631083 67 + . . scaffold1836 TRF Tandem_Repeat 631028 631083 67 + . . scaffold1836 TRF Tandem_Repeat 635189 635264 129 + . . scaffold1836 GLEAN promoter 644238 645237 0.999666 + . ID=CGI_10026297; scaffold1836 GLEAN mRNA 645238 646371 0.999666 + . ID=CGI_10026297; scaffold1836 WUBlastX LINE_RTE-X 650570 650986 71 - . . scaffold1836 WUBlastX LINE_RTE-X 650714 651004 89 - . . scaffold1836 TRF Tandem_Repeat 663291 663403 108 + . . scaffold1836 TRF Tandem_Repeat 664270 664519 263 + . . scaffold1836 TRF Tandem_Repeat 664280 664519 309 + . . scaffold1836 GLEAN mRNA 668011 685122 0.984206 - . ID=CGI_10026298; scaffold1836 TRF Tandem_Repeat 670505 671380 1334 + . . scaffold1836 TRF Tandem_Repeat 670505 671380 1220 + . . scaffold1836 TRF Tandem_Repeat 670520 671380 1334 + . . scaffold1836 TRF Tandem_Repeat 673685 673880 302 + . . scaffold1836 TRF Tandem_Repeat 675125 675249 64 + . . scaffold1836 GLEAN promoter 685123 686122 0.984206 - . ID=CGI_10026298; scaffold1836 TRF Tandem_Repeat 689342 689366 50 + . . scaffold1836 TRF Tandem_Repeat 696465 697408 1009 + . . scaffold1836 GLEAN mRNA 706408 713018 0.999676 - . ID=CGI_10026299; scaffold1836 TRF Tandem_Repeat 706637 707221 629 + . . scaffold1836 TRF Tandem_Repeat 706639 707221 470 + . . scaffold1836 GLEAN promoter 711795 712794 0.843575 + . ID=CGI_10026300; scaffold1836 GLEAN mRNA 712795 721764 0.843575 + . ID=CGI_10026300; scaffold1836 GLEAN promoter 713019 714018 0.999676 - . ID=CGI_10026299; scaffold1836 WUBlastX LTR_Gypsy 715534 715698 79 + . . scaffold1836 WUBlastX LTR_Gypsy 715537 715650 81 + . . scaffold1836 TRF Tandem_Repeat 718370 718764 499 + . . scaffold1836 GLEAN promoter 722743 723742 0.990978 + . ID=CGI_10026301; scaffold1836 GLEAN mRNA 723743 729801 0.990978 + . ID=CGI_10026301; scaffold1836 TRF Tandem_Repeat 726571 726804 263 + . . scaffold1836 TRF Tandem_Repeat 729238 729335 178 + . . scaffold1836 TRF Tandem_Repeat 730391 730420 51 + . . scaffold1836 TRF Tandem_Repeat 730593 731437 1237 + . . scaffold1836 TRF Tandem_Repeat 735041 735080 80 + . . scaffold1836 GLEAN promoter 740149 741148 0.999376 + . ID=CGI_10026302; scaffold1836 GLEAN mRNA 741149 742060 0.999376 + . ID=CGI_10026302; scaffold1836 TRF Tandem_Repeat 751975 753340 2228 + . . scaffold1836 GLEAN mRNA 756116 756889 0.999064 - . ID=CGI_10026303; scaffold1836 GLEAN promoter 756890 757889 0.999064 - . ID=CGI_10026303; scaffold1836 GLEAN mRNA 760238 761170 0.999375 - . ID=CGI_10026304; scaffold1836 GLEAN promoter 761171 762170 0.999375 - . ID=CGI_10026304; scaffold1836 GLEAN promoter 762134 763133 0.997948 + . ID=CGI_10026305; scaffold1836 GLEAN mRNA 763134 763511 0.997948 + . ID=CGI_10026305; scaffold1836 GLEAN mRNA 766881 772631 1 - . ID=CGI_10026306; scaffold1836 TRF Tandem_Repeat 769713 770478 1102 + . . scaffold1836 GLEAN promoter 772632 773631 1 - . ID=CGI_10026306; scaffold1836 GLEAN mRNA 785720 786886 0.777728 - . ID=CGI_10026308; scaffold1836 GLEAN promoter 786887 787886 0.777728 - . ID=CGI_10026308; scaffold1836 GLEAN mRNA 789137 795272 0.937542 - . ID=CGI_10026309; scaffold1836 TRF Tandem_Repeat 790745 790789 81 + . . scaffold1836 GLEAN promoter 795273 796272 0.937542 - . ID=CGI_10026309; scaffold1836 TRF Tandem_Repeat 796281 796324 88 + . . scaffold1836 TRF Tandem_Repeat 798369 799625 1478 + . . scaffold1836 GLEAN promoter 806671 807670 0.694465 + . ID=CGI_10026310; scaffold1836 GLEAN mRNA 807671 808951 0.694465 + . ID=CGI_10026310; scaffold1836 TRF Tandem_Repeat 809565 809592 56 + . . scaffold1836 TRF Tandem_Repeat 812805 812867 126 + . . scaffold1836 GLEAN promoter 813629 814628 0.649519 + . ID=CGI_10026311; scaffold1836 GLEAN mRNA 814629 815066 0.649519 + . ID=CGI_10026311; scaffold1836 GLEAN mRNA 816262 824963 0.998274 - . ID=CGI_10026312; scaffold1836 GLEAN promoter 824964 825963 0.998274 - . ID=CGI_10026312; scaffold1836 TRF Tandem_Repeat 825180 825220 55 + . . scaffold1836 TRF Tandem_Repeat 837921 837994 123 + . . scaffold1836 TRF Tandem_Repeat 837922 837983 72 + . . scaffold1836 TRF Tandem_Repeat 839501 840423 1178 + . . scaffold1836 GLEAN mRNA 842273 844969 0.959039 - . ID=CGI_10026313; scaffold1836 GLEAN promoter 844970 845969 0.959039 - . ID=CGI_10026313; scaffold1836 GLEAN promoter 848858 849857 0.999943 + . ID=CGI_10026314; scaffold1836 TRF Tandem_Repeat 849311 849349 78 + . . scaffold1836 GLEAN mRNA 849858 882323 0.999943 + . ID=CGI_10026314; scaffold1836 TRF Tandem_Repeat 858827 859006 60 + . . scaffold1836 TRF Tandem_Repeat 871942 871999 52 + . . scaffold1836 TRF Tandem_Repeat 882733 882817 140 + . . scaffold1836 TRF Tandem_Repeat 883809 883875 62 + . . scaffold1836 TRF Tandem_Repeat 885842 885908 62 + . . scaffold1836 TRF Tandem_Repeat 885842 885908 71 + . . scaffold1836 TRF Tandem_Repeat 887112 887426 240 + . . scaffold1836 TRF Tandem_Repeat 910524 910594 106 + . . scaffold1836 GLEAN mRNA 923665 925754 0.99895 - . ID=CGI_10026315; scaffold1836 GLEAN promoter 925755 926754 0.99895 - . ID=CGI_10026315; scaffold1836 GLEAN promoter 929454 930453 0.999999 + . ID=CGI_10026316; scaffold1836 GLEAN mRNA 930454 932615 0.999999 + . ID=CGI_10026316; scaffold1836 TRF Tandem_Repeat 933705 933730 52 + . . scaffold1836 TRF Tandem_Repeat 937398 937427 60 + . . scaffold1836 GLEAN mRNA 939076 940095 1 - . ID=CGI_10026317; scaffold1836 GLEAN promoter 940096 941095 1 - . ID=CGI_10026317; scaffold1836 TRF Tandem_Repeat 940246 940376 137 + . . scaffold1836 GLEAN mRNA 940698 949231 0.999994 - . ID=CGI_10026318; scaffold1836 TRF Tandem_Repeat 943076 943198 183 + . . scaffold1836 TRF Tandem_Repeat 943658 943711 108 + . . scaffold1836 GLEAN promoter 949232 950231 0.999994 - . ID=CGI_10026318; scaffold1836 GLEAN mRNA 950629 951099 0.53161 - . ID=CGI_10026319; scaffold1836 GLEAN promoter 951100 952099 0.53161 - . ID=CGI_10026319; scaffold1836 GLEAN promoter 954353 955352 0.995307 + . ID=CGI_10026320; scaffold1836 GLEAN mRNA 955353 958688 0.995307 + . ID=CGI_10026320; scaffold1836 TRF Tandem_Repeat 959468 959524 73 + . . scaffold1836 TRF Tandem_Repeat 963131 963171 73 + . . scaffold1836 TRF Tandem_Repeat 964160 964185 52 + . . scaffold1836 WUBlastX LINE_I 1003111 1003851 21 + . . scaffold1836 WUBlastX LINE_L1-Tx1 1004169 1005314 349 + . . scaffold1836 TRF Tandem_Repeat 1014802 1014840 78 + . . scaffold1836 TRF Tandem_Repeat 1015358 1015404 85 + . . scaffold1836 WUBlastX LTR_Gypsy 1025171 1025527 232 - . . scaffold1836 GLEAN mRNA 1025204 1064430 0.980298 - . ID=CGI_10026321; scaffold1836 WUBlastX LTR_Gypsy 1025530 1026786 1012 - . . scaffold1836 WUBlastX LTR_Pao 1026682 1026807 29 - . . scaffold1836 WUBlastX DNA_Harbinger 1028107 1028274 49 + . . scaffold1836 TRF Tandem_Repeat 1050845 1050886 75 + . . scaffold1836 TRF Tandem_Repeat 1054251 1054308 116 + . . scaffold1836 GLEAN promoter 1064431 1065430 0.980298 - . ID=CGI_10026321; scaffold1836 GLEAN mRNA 1070734 1071972 0.777732 - . ID=CGI_10026322; scaffold1836 GLEAN promoter 1071973 1072972 0.777732 - . ID=CGI_10026322; scaffold1836 GLEAN mRNA 1073829 1083125 1 - . ID=CGI_10026323; scaffold1836 TRF Tandem_Repeat 1076774 1076818 90 + . . scaffold1836 TRF Tandem_Repeat 1081398 1081523 206 + . . scaffold1836 GLEAN promoter 1083126 1084125 1 - . ID=CGI_10026323; scaffold1836 TRF Tandem_Repeat 1090790 1090832 86 + . . scaffold1836 TRF Tandem_Repeat 1092763 1092804 84 + . . scaffold1836 GLEAN mRNA 1096379 1096708 0.999993 - . ID=CGI_10026324; scaffold1836 GLEAN promoter 1096709 1097708 0.999993 - . ID=CGI_10026324; scaffold1836 GLEAN mRNA 1097829 1108871 0.999345 - . ID=CGI_10026325; scaffold1836 TRF Tandem_Repeat 1098428 1098457 60 + . . scaffold1836 TRF Tandem_Repeat 1098511 1098562 68 + . . scaffold1836 TRF Tandem_Repeat 1098523 1098561 51 + . . scaffold1836 TRF Tandem_Repeat 1100048 1100085 51 + . . scaffold1836 TRF Tandem_Repeat 1100259 1101273 1212 + . . scaffold1836 GLEAN promoter 1108494 1109493 0.994402 + . ID=CGI_10026326; scaffold1836 GLEAN promoter 1108872 1109871 0.999345 - . ID=CGI_10026325; scaffold1836 GLEAN mRNA 1109494 1117782 0.994402 + . ID=CGI_10026326; scaffold1836 GLEAN mRNA 1118172 1134330 0.999675 - . ID=CGI_10026327; scaffold1836 GLEAN promoter 1119300 1120299 0.9999 + . ID=CGI_10026328; scaffold1836 GLEAN mRNA 1120300 1126051 0.9999 + . ID=CGI_10026328; scaffold1836 GLEAN promoter 1134331 1135330 0.999675 - . ID=CGI_10026327; scaffold1836 WUBlastX LINE_L1 1134925 1135656 31 + . . scaffold1836 WUBlastX LINE_L2 1135042 1135689 52 + . . scaffold1836 WUBlastX LINE_L1 1135144 1135662 66 + . . scaffold1836 WUBlastX LINE_RTE-X 1135848 1136552 158 + . . scaffold1836 WUBlastX LINE_RTE-X 1135863 1136438 184 + . . scaffold1836 TRF Tandem_Repeat 1139970 1140240 389 + . . scaffold1837 GLEAN mRNA 24800 37674 0.999949 - . ID=CGI_10002781; scaffold1837 GLEAN promoter 37675 38674 0.999949 - . ID=CGI_10002781; scaffold1837 GLEAN promoter 52147 53146 1 + . ID=CGI_10002782; scaffold1837 GLEAN mRNA 53147 53830 1 + . ID=CGI_10002782; scaffold1838 TRF Tandem_Repeat 5880 5930 102 + . . scaffold1838 TRF Tandem_Repeat 6045 6104 120 + . . scaffold1838 GLEAN promoter 7122 8121 0.999948 + . ID=CGI_10014237; scaffold1838 GLEAN mRNA 8122 13059 0.999948 + . ID=CGI_10014237; scaffold1838 TRF Tandem_Repeat 10021 10308 416 + . . scaffold1838 WUBlastX LINE_CR1 16120 16194 23 - . . scaffold1838 WUBlastX LINE_CR1 16211 16444 49 - . . scaffold1838 GLEAN promoter 17645 18644 0.544261 + . ID=CGI_10014238; scaffold1838 TRF Tandem_Repeat 18427 18472 83 + . . scaffold1838 GLEAN mRNA 18645 35564 0.544261 + . ID=CGI_10014238; scaffold1838 TRF Tandem_Repeat 21284 21396 199 + . . scaffold1838 TRF Tandem_Repeat 21288 21378 83 + . . scaffold1838 GLEAN mRNA 27527 28506 0.5 - . ID=CGI_10014239; scaffold1838 GLEAN promoter 28507 29506 0.5 - . ID=CGI_10014239; scaffold1838 TRF Tandem_Repeat 40442 40470 58 + . . scaffold1838 TRF Tandem_Repeat 40796 40830 70 + . . scaffold1838 GLEAN promoter 44154 45153 0.999363 + . ID=CGI_10014240; scaffold1838 GLEAN mRNA 45154 55054 0.999363 + . ID=CGI_10014240; scaffold1838 TRF Tandem_Repeat 55583 56134 829 + . . scaffold1838 TRF Tandem_Repeat 55583 56134 697 + . . scaffold1838 TRF Tandem_Repeat 58049 58087 78 + . . scaffold1838 GLEAN mRNA 58427 74279 0.999522 - . ID=CGI_10014241; scaffold1838 TRF Tandem_Repeat 61078 61103 52 + . . scaffold1838 GLEAN promoter 74280 75279 0.999522 - . ID=CGI_10014241; scaffold1838 GLEAN promoter 76508 77507 1 + . ID=CGI_10014242; scaffold1838 GLEAN mRNA 77508 87931 1 + . ID=CGI_10014242; scaffold1838 TRF Tandem_Repeat 82232 82290 111 + . . scaffold1838 GLEAN promoter 94415 95414 0.499812 + . ID=CGI_10014243; scaffold1838 GLEAN mRNA 95415 110660 0.499812 + . ID=CGI_10014243; scaffold1838 WUBlastX LINE_RTE-X 99022 99558 125 + . . scaffold1838 TRF Tandem_Repeat 99587 99646 57 + . . scaffold1838 GLEAN promoter 114898 115897 0.740208 + . ID=CGI_10014244; scaffold1838 GLEAN mRNA 115898 124045 0.740208 + . ID=CGI_10014244; scaffold1838 TRF Tandem_Repeat 128939 129013 150 + . . scaffold1838 TRF Tandem_Repeat 131704 132012 345 + . . scaffold1838 TRF Tandem_Repeat 131705 132012 295 + . . scaffold1838 TRF Tandem_Repeat 132009 132276 320 + . . scaffold1838 GLEAN promoter 136443 137442 0.721317 + . ID=CGI_10014245; scaffold1838 GLEAN mRNA 137443 142220 0.721317 + . ID=CGI_10014245; scaffold1838 GLEAN promoter 141290 142289 0.597066 + . ID=CGI_10014246; scaffold1838 GLEAN mRNA 142290 149688 0.597066 + . ID=CGI_10014246; scaffold1838 GLEAN mRNA 152891 158597 0.740179 - . ID=CGI_10014247; scaffold1838 GLEAN promoter 158598 159597 0.740179 - . ID=CGI_10014247; scaffold1838 GLEAN promoter 165965 166964 0.934391 + . ID=CGI_10014248; scaffold1838 GLEAN mRNA 166965 178266 0.934391 + . ID=CGI_10014248; scaffold1838 GLEAN promoter 182337 183336 1 + . ID=CGI_10014249; scaffold1838 GLEAN mRNA 183337 184422 1 + . ID=CGI_10014249; scaffold1838 GLEAN promoter 186139 187138 1 + . ID=CGI_10014250; scaffold1838 GLEAN mRNA 187139 193051 1 + . ID=CGI_10014250; scaffold1838 TRF Tandem_Repeat 191810 191839 60 + . . scaffold1838 GLEAN promoter 192663 193662 0.99994 + . ID=CGI_10014251; scaffold1838 GLEAN mRNA 193663 209245 0.99994 + . ID=CGI_10014251; scaffold1838 GLEAN promoter 209298 210297 0.990769 + . ID=CGI_10014252; scaffold1838 GLEAN mRNA 210298 219177 0.990769 + . ID=CGI_10014252; scaffold1838 TRF Tandem_Repeat 211093 211137 90 + . . scaffold1838 GLEAN mRNA 220004 221391 1 - . ID=CGI_10014253; scaffold1838 TRF Tandem_Repeat 220624 220669 92 + . . scaffold1838 GLEAN promoter 221392 222391 1 - . ID=CGI_10014253; scaffold1838 GLEAN mRNA 231541 234068 0.99795 - . ID=CGI_10014254; scaffold1838 GLEAN promoter 233396 234395 1 + . ID=CGI_10014255; scaffold1838 GLEAN promoter 234069 235068 0.99795 - . ID=CGI_10014254; scaffold1838 GLEAN mRNA 234396 236314 1 + . ID=CGI_10014255; scaffold1838 GLEAN promoter 236644 237643 0.836238 + . ID=CGI_10014256; scaffold1838 GLEAN mRNA 237644 240788 0.836238 + . ID=CGI_10014256; scaffold1838 TRF Tandem_Repeat 239242 239275 68 + . . scaffold1838 GLEAN mRNA 243742 246798 0.977081 - . ID=CGI_10014257; scaffold1838 GLEAN promoter 246799 247798 0.977081 - . ID=CGI_10014257; scaffold1838 TRF Tandem_Repeat 247319 247361 59 + . . scaffold1838 GLEAN mRNA 248870 263660 0.958276 - . ID=CGI_10014258; scaffold1838 TRF Tandem_Repeat 255042 255069 56 + . . scaffold1838 GLEAN promoter 263661 264660 0.958276 - . ID=CGI_10014258; scaffold1838 GLEAN promoter 285604 286603 0.999198 + . ID=CGI_10014259; scaffold1838 GLEAN mRNA 286604 292555 0.999198 + . ID=CGI_10014259; scaffold1838 TRF Tandem_Repeat 293507 293661 93 + . . scaffold1838 TRF Tandem_Repeat 293573 293658 57 + . . scaffold1838 GLEAN promoter 299105 300104 0.432861 + . ID=CGI_10014260; scaffold1838 GLEAN mRNA 300105 307011 0.432861 + . ID=CGI_10014260; scaffold1838 TRF Tandem_Repeat 301400 301468 138 + . . scaffold1838 GLEAN promoter 306469 307468 0.972482 + . ID=CGI_10014261; scaffold1838 GLEAN mRNA 307469 316350 0.972482 + . ID=CGI_10014261; scaffold1838 TRF Tandem_Repeat 312016 313508 1864 + . . scaffold1838 TRF Tandem_Repeat 320723 320756 59 + . . scaffold1838 GLEAN mRNA 324812 326038 0.999999 - . ID=CGI_10014262; scaffold1838 GLEAN promoter 326039 327038 0.999999 - . ID=CGI_10014262; scaffold1838 TRF Tandem_Repeat 327134 327318 194 + . . scaffold1838 TRF Tandem_Repeat 327135 327318 199 + . . scaffold1838 TRF Tandem_Repeat 330548 330587 80 + . . scaffold1838 GLEAN mRNA 330941 332380 1 - . ID=CGI_10014263; scaffold1838 GLEAN promoter 331958 332957 0.563165 + . ID=CGI_10014264; scaffold1838 GLEAN promoter 332381 333380 1 - . ID=CGI_10014263; scaffold1838 GLEAN mRNA 332958 349598 0.563165 + . ID=CGI_10014264; scaffold1838 WUBlastX LINE_RTE-X 333962 335248 461 - . . scaffold1838 WUBlastX LINE_L2 335507 336361 96 - . . scaffold1838 WUBlastX LINE_RTE-X 335735 336367 187 - . . scaffold1838 WUBlastX LINE_L2 335834 336778 141 - . . scaffold1838 WUBlastX LINE_RTE-X 335846 336583 324 - . . scaffold1838 TRF Tandem_Repeat 340466 340525 120 + . . scaffold1838 TRF Tandem_Repeat 343410 343546 130 + . . scaffold1838 GLEAN mRNA 354246 360736 0.999828 - . ID=CGI_10014265; scaffold1838 GLEAN promoter 360613 361612 0.631432 + . ID=CGI_10014266; scaffold1838 GLEAN promoter 360737 361736 0.999828 - . ID=CGI_10014265; scaffold1838 GLEAN mRNA 361613 368125 0.631432 + . ID=CGI_10014266; scaffold1838 WUBlastX LINE_Proto2 364181 364489 55 + . . scaffold1838 WUBlastX LINE_Proto2 364280 364492 60 + . . scaffold1838 WUBlastX LINE_Proto2 364606 367227 360 + . . scaffold1838 WUBlastX LINE_RTE-X 365215 367605 397 + . . scaffold1838 WUBlastX LINE_RTE-X 365710 367221 424 + . . scaffold1838 GLEAN promoter 368171 369170 0.681196 + . ID=CGI_10014267; scaffold1838 GLEAN mRNA 369171 371795 0.681196 + . ID=CGI_10014267; scaffold1838 GLEAN mRNA 372749 373730 1 - . ID=CGI_10014268; scaffold1838 GLEAN promoter 373731 374730 1 - . ID=CGI_10014268; scaffold1838 TRF Tandem_Repeat 373773 373820 62 + . . scaffold1838 GLEAN mRNA 377824 384529 0.593383 - . ID=CGI_10014269; scaffold1838 TRF Tandem_Repeat 378808 378876 138 + . . scaffold1838 TRF Tandem_Repeat 381964 382032 138 + . . scaffold1838 GLEAN promoter 384530 385529 0.593383 - . ID=CGI_10014269; scaffold1838 WUBlastX LINE_RTE-X 385158 386090 334 - . . scaffold1839 TRF Tandem_Repeat 371 768 733 + . . scaffold1839 GLEAN promoter 2763 3762 0.5 + . ID=CGI_10003405; scaffold1839 GLEAN mRNA 3763 4173 0.5 + . ID=CGI_10003405; scaffold1839 TRF Tandem_Repeat 3764 4214 342 + . . scaffold1839 GLEAN mRNA 7484 8483 0.650997 - . ID=CGI_10003406; scaffold1839 GLEAN promoter 8484 9483 0.650997 - . ID=CGI_10003406; scaffold1839 GLEAN mRNA 14505 16441 1 - . ID=CGI_10003407; scaffold1839 GLEAN promoter 16442 17441 1 - . ID=CGI_10003407; scaffold1839 GLEAN promoter 16445 17444 0.897334 + . ID=CGI_10003408; scaffold1839 GLEAN mRNA 17445 43514 0.897334 + . ID=CGI_10003408; scaffold1839 TRF Tandem_Repeat 22014 22156 187 + . . scaffold1839 TRF Tandem_Repeat 25447 25605 119 + . . scaffold1839 TRF Tandem_Repeat 26163 26842 786 + . . scaffold1839 TRF Tandem_Repeat 31628 31738 93 + . . scaffold1839 TRF Tandem_Repeat 31917 32183 438 + . . scaffold1839 TRF Tandem_Repeat 36580 36788 190 + . . scaffold1839 TRF Tandem_Repeat 36990 37027 51 + . . scaffold1839 TRF Tandem_Repeat 42913 43227 612 + . . scaffold1839 TRF Tandem_Repeat 48547 51091 2641 + . . scaffold1839 TRF Tandem_Repeat 62977 63027 86 + . . scaffold1839 TRF Tandem_Repeat 64720 64769 100 + . . scaffold1839 TRF Tandem_Repeat 68117 68378 258 + . . scaffold1839 WUBlastX LINE_L1-Tx1 69226 69582 26 + . . scaffold184 GLEAN promoter 357 1356 0.990962 + . ID=CGI_10014791; scaffold184 GLEAN mRNA 1357 24513 0.990962 + . ID=CGI_10014791; scaffold184 WUBlastX LINE_RTE-X 27491 29113 658 + . . scaffold184 WUBlastX LINE_RTE-X 27779 29116 724 + . . scaffold184 WUBlastX LINE_RTE-X 28655 29224 153 + . . scaffold184 TRF Tandem_Repeat 60925 61078 272 + . . scaffold184 TRF Tandem_Repeat 61519 61599 153 + . . scaffold184 TRF Tandem_Repeat 64123 64159 74 + . . scaffold184 WUBlastX LINE_CR1-L2 64350 64628 26 + . . scaffold184 WUBlastX LINE_CR1 64453 65103 51 + . . scaffold184 WUBlastX LINE_L2 64600 65451 355 + . . scaffold184 TRF Tandem_Repeat 65650 65769 141 + . . scaffold184 TRF Tandem_Repeat 65877 65934 116 + . . scaffold184 TRF Tandem_Repeat 69879 69940 124 + . . scaffold184 TRF Tandem_Repeat 70547 70609 72 + . . scaffold184 TRF Tandem_Repeat 70628 70686 73 + . . scaffold184 TRF Tandem_Repeat 104275 104324 73 + . . scaffold184 GLEAN mRNA 106051 114373 0.998011 - . ID=CGI_10014792; scaffold184 TRF Tandem_Repeat 114205 114234 60 + . . scaffold184 GLEAN promoter 114374 115373 0.998011 - . ID=CGI_10014792; scaffold184 TRF Tandem_Repeat 116892 116991 159 + . . scaffold184 TRF Tandem_Repeat 116989 117019 53 + . . scaffold184 GLEAN promoter 117645 118644 0.993363 + . ID=CGI_10014793; scaffold184 GLEAN mRNA 118645 122473 0.993363 + . ID=CGI_10014793; scaffold184 TRF Tandem_Repeat 119743 119809 134 + . . scaffold184 TRF Tandem_Repeat 125157 125201 90 + . . scaffold184 TRF Tandem_Repeat 128445 128475 53 + . . scaffold184 TRF Tandem_Repeat 129496 129523 56 + . . scaffold184 WUBlastX LINE_RTE-X 131075 131311 20 + . . scaffold184 WUBlastX LINE_RTE-X 131111 131311 50 + . . scaffold184 WUBlastX LINE_RTE-X 131384 131587 28 + . . scaffold184 WUBlastX LINE_RTE-X 131426 131578 37 + . . scaffold184 WUBlastX LINE_RTE-X 131474 131596 37 + . . scaffold184 TRF Tandem_Repeat 136336 136375 53 + . . scaffold184 TRF Tandem_Repeat 136339 136375 65 + . . scaffold184 WUBlastX DNA_Harbinger 143591 144223 472 - . . scaffold184 WUBlastX DNA_Harbinger 144247 144462 123 - . . scaffold184 WUBlastX DNA_Harbinger 144502 144576 29 - . . scaffold184 WUBlastX DNA_Harbinger 144582 144836 31 - . . scaffold184 TRF Tandem_Repeat 150884 150925 66 + . . scaffold184 GLEAN mRNA 157859 165368 0.999999 - . ID=CGI_10014796; scaffold184 WUBlastX LINE_Penelope 160503 161024 67 - . . scaffold184 WUBlastX LINE_Penelope 160590 161024 303 - . . scaffold184 GLEAN promoter 165369 166368 0.999999 - . ID=CGI_10014796; scaffold184 WUBlastX LTR_Copia 171215 171262 21 + . . scaffold184 WUBlastX LTR_Gypsy 171240 174056 1856 + . . scaffold184 WUBlastX LTR_Ngaro 177823 178107 178 + . . scaffold184 TRF Tandem_Repeat 178710 178759 100 + . . scaffold184 TRF Tandem_Repeat 180194 180245 86 + . . scaffold184 WUBlastX LTR_Ngaro 180739 180897 33 + . . scaffold184 WUBlastX LTR_Ngaro 180784 180903 41 + . . scaffold184 WUBlastX LTR_Ngaro 180784 180972 28 + . . scaffold184 WUBlastX LTR_Ngaro 180957 182054 418 + . . scaffold184 WUBlastX LTR_Ngaro 182096 182257 48 + . . scaffold184 WUBlastX LTR_Ngaro 182272 183141 247 + . . scaffold184 GLEAN mRNA 186538 196154 0.912721 - . ID=CGI_10014797; scaffold184 TRF Tandem_Repeat 188790 188858 138 + . . scaffold184 WUBlastX DNA_TcMar-Tc1 193881 194294 26 + . . scaffold184 WUBlastX DNA_TcMar-Tc1 193968 194258 50 + . . scaffold184 WUBlastX DNA_TcMar-Tc1 194183 194551 55 + . . scaffold184 WUBlastX DNA_TcMar-Tc1 194545 194868 117 + . . scaffold184 GLEAN promoter 196155 197154 0.912721 - . ID=CGI_10014797; scaffold184 GLEAN promoter 211135 212134 0.963777 + . ID=CGI_10014798; scaffold184 TRF Tandem_Repeat 211422 211482 122 + . . scaffold184 TRF Tandem_Repeat 211931 212029 189 + . . scaffold184 GLEAN mRNA 212135 215620 0.963777 + . ID=CGI_10014798; scaffold184 WUBlastX DNA_Sola 224098 225732 115 + . . scaffold184 WUBlastX DNA_Sola 224554 225771 395 + . . scaffold184 WUBlastX DNA_Sola 225940 226227 114 + . . scaffold184 WUBlastX DNA_Sola 232930 233259 116 - . . scaffold184 WUBlastX DNA_Sola 233275 234723 379 - . . scaffold184 WUBlastX DNA_Sola 233362 235209 280 - . . scaffold184 GLEAN promoter 247871 248870 0.689082 + . ID=CGI_10014799; scaffold184 GLEAN mRNA 248871 256134 0.689082 + . ID=CGI_10014799; scaffold184 WUBlastX DNA_Merlin 249263 249838 99 + . . scaffold184 WUBlastX DNA_Merlin 249479 249880 111 + . . scaffold184 WUBlastX DNA_PiggyBac 251291 251701 57 - . . scaffold184 WUBlastX DNA_PiggyBac 251393 251845 117 - . . scaffold184 WUBlastX DNA_PiggyBac 251429 251776 183 - . . scaffold184 WUBlastX DNA_PiggyBac 251800 251874 28 - . . scaffold184 WUBlastX DNA_PiggyBac 251800 251904 24 - . . scaffold184 WUBlastX DNA_IS4EU 254388 255116 27 + . . scaffold184 WUBlastX LTR_Gypsy 256636 256866 77 + . . scaffold184 GLEAN mRNA 263401 275066 0.544819 - . ID=CGI_10014800; scaffold184 TRF Tandem_Repeat 265865 265922 116 + . . scaffold184 GLEAN promoter 275067 276066 0.544819 - . ID=CGI_10014800; scaffold184 TRF Tandem_Repeat 276490 276537 96 + . . scaffold184 WUBlastX DNA_TcMar-Tc1 277332 278360 456 + . . scaffold184 GLEAN mRNA 291677 304026 0.999999 - . ID=CGI_10014801; scaffold184 TRF Tandem_Repeat 299078 299106 58 + . . scaffold184 GLEAN promoter 304027 305026 0.999999 - . ID=CGI_10014801; scaffold184 TRF Tandem_Repeat 306799 306828 60 + . . scaffold184 TRF Tandem_Repeat 313549 313577 58 + . . scaffold184 TRF Tandem_Repeat 323680 323737 57 + . . scaffold184 TRF Tandem_Repeat 323680 323734 56 + . . scaffold184 WUBlastX LINE_L1-Tx1 323789 324373 139 - . . scaffold184 WUBlastX LINE_L1-Tx1 324361 325152 151 - . . scaffold184 WUBlastX LINE_L1-Tx1 324915 325898 233 - . . scaffold184 WUBlastX LINE_CR1 325659 325952 71 - . . scaffold184 WUBlastX LINE_L1-Tx1 325955 326860 234 - . . scaffold184 WUBlastX LINE_L1-Tx1 326851 327216 197 - . . scaffold184 WUBlastX LINE_L1-Tx1 327174 327422 102 - . . scaffold184 WUBlastX LINE_L2 327759 328013 72 - . . scaffold184 WUBlastX LINE_RTE-BovB 327810 328199 54 - . . scaffold184 TRF Tandem_Repeat 344005 344101 78 + . . scaffold184 TRF Tandem_Repeat 344005 344101 90 + . . scaffold184 TRF Tandem_Repeat 344013 344100 107 + . . scaffold184 TRF Tandem_Repeat 344024 344100 90 + . . scaffold184 WUBlastX LINE_RTE-X 345401 345439 20 - . . scaffold184 WUBlastX LINE_RTE-X 345505 345681 44 - . . scaffold184 WUBlastX LINE_RTE-X 345508 345741 40 - . . scaffold184 WUBlastX LINE_CR1-L2 346958 347146 38 + . . scaffold184 WUBlastX LINE_CR1-L2 346967 347044 51 + . . scaffold184 WUBlastX LINE_Jockey 346994 347044 52 + . . scaffold184 WUBlastX LINE_RTE-X 347141 347338 25 + . . scaffold184 WUBlastX LINE_Jockey 347355 347645 74 + . . scaffold184 WUBlastX LTR_Ngaro 354299 354748 228 + . . scaffold184 TRF Tandem_Repeat 385439 385563 97 + . . scaffold184 TRF Tandem_Repeat 385526 385639 210 + . . scaffold184 GLEAN mRNA 385732 404477 0.99416 - . ID=CGI_10014802; scaffold184 TRF Tandem_Repeat 386376 386443 120 + . . scaffold184 TRF Tandem_Repeat 399056 399114 73 + . . scaffold184 TRF Tandem_Repeat 399057 399198 94 + . . scaffold184 TRF Tandem_Repeat 399133 399198 69 + . . scaffold184 TRF Tandem_Repeat 399133 399264 90 + . . scaffold184 TRF Tandem_Repeat 399799 399884 136 + . . scaffold184 TRF Tandem_Repeat 401621 401745 73 + . . scaffold184 TRF Tandem_Repeat 402653 402721 57 + . . scaffold184 GLEAN promoter 404478 405477 0.99416 - . ID=CGI_10014802; scaffold184 WUBlastX LINE_L1-Tx1 411704 412003 61 + . . scaffold1840 TRF Tandem_Repeat 3372 4221 254 + . . scaffold1840 TRF Tandem_Repeat 3503 4207 511 + . . scaffold1840 TRF Tandem_Repeat 3521 4207 383 + . . scaffold1840 TRF Tandem_Repeat 5449 5805 472 + . . scaffold1840 TRF Tandem_Repeat 5449 5805 477 + . . scaffold1840 GLEAN mRNA 11734 15388 1 - . ID=CGI_10006069; scaffold1840 GLEAN promoter 15389 16388 1 - . ID=CGI_10006069; scaffold1840 GLEAN promoter 19815 20814 0.999351 + . ID=CGI_10006070; scaffold1840 TRF Tandem_Repeat 20101 20138 62 + . . scaffold1840 GLEAN mRNA 20815 39106 0.999351 + . ID=CGI_10006070; scaffold1840 TRF Tandem_Repeat 21167 21194 56 + . . scaffold1840 TRF Tandem_Repeat 33202 33237 72 + . . scaffold1840 TRF Tandem_Repeat 41653 41788 100 + . . scaffold1840 TRF Tandem_Repeat 41670 41788 118 + . . scaffold1840 TRF Tandem_Repeat 42705 42742 58 + . . scaffold1840 TRF Tandem_Repeat 44413 44446 68 + . . scaffold1840 WUBlastX DNA_En-Spm 58277 58498 58 + . . scaffold1840 WUBlastX LTR_Gypsy 62642 63397 40 - . . scaffold1840 WUBlastX LTR_Gypsy 62654 63253 117 - . . scaffold1840 TRF Tandem_Repeat 66566 67398 197 + . . scaffold1840 TRF Tandem_Repeat 66581 67398 1205 + . . scaffold1840 TRF Tandem_Repeat 66589 66678 52 + . . scaffold1840 TRF Tandem_Repeat 94652 94738 95 + . . scaffold1840 TRF Tandem_Repeat 100709 100750 84 + . . scaffold1840 GLEAN mRNA 101104 104147 0.937773 - . ID=CGI_10006072; scaffold1840 TRF Tandem_Repeat 101484 101530 94 + . . scaffold1840 GLEAN promoter 104148 105147 0.937773 - . ID=CGI_10006072; scaffold1840 TRF Tandem_Repeat 107723 107754 64 + . . scaffold1840 TRF Tandem_Repeat 110182 110212 62 + . . scaffold1840 WUBlastX DNA_IS4EU 131565 131696 30 - . . scaffold1840 WUBlastX DNA_IS4EU 132067 132210 31 - . . scaffold1841 TRF Tandem_Repeat 2652 2796 119 + . . scaffold1841 TRF Tandem_Repeat 2660 2783 214 + . . scaffold1841 TRF Tandem_Repeat 8434 8519 172 + . . scaffold1841 GLEAN mRNA 9003 13691 1 - . ID=CGI_10008263; scaffold1841 GLEAN promoter 13692 14691 1 - . ID=CGI_10008263; scaffold1841 GLEAN mRNA 15263 16753 0.999892 - . ID=CGI_10008264; scaffold1841 GLEAN promoter 16754 17753 0.999892 - . ID=CGI_10008264; scaffold1841 GLEAN mRNA 19111 22037 0.701023 - . ID=CGI_10008265; scaffold1841 TRF Tandem_Repeat 20074 20148 141 + . . scaffold1841 GLEAN promoter 22038 23037 0.701023 - . ID=CGI_10008265; scaffold1841 GLEAN mRNA 24212 27695 0.922429 - . ID=CGI_10008266; scaffold1841 GLEAN promoter 27696 28695 0.922429 - . ID=CGI_10008266; scaffold1841 GLEAN mRNA 38532 47999 0.384223 - . ID=CGI_10008267; scaffold1841 GLEAN promoter 48000 48999 0.384223 - . ID=CGI_10008267; scaffold1841 GLEAN mRNA 48203 72597 0.617084 - . ID=CGI_10008268; scaffold1841 GLEAN promoter 57284 58283 1 + . ID=CGI_10008269; scaffold1841 GLEAN mRNA 58284 58829 1 + . ID=CGI_10008269; scaffold1841 GLEAN promoter 69018 70017 0.998994 + . ID=CGI_10008270; scaffold1841 GLEAN mRNA 70018 73358 0.998994 + . ID=CGI_10008270; scaffold1841 GLEAN promoter 72598 73597 0.617084 - . ID=CGI_10008268; scaffold1841 TRF Tandem_Repeat 73535 73588 74 + . . scaffold1841 TRF Tandem_Repeat 75040 76094 1250 + . . scaffold1841 GLEAN mRNA 77523 95351 0.932026 - . ID=CGI_10008271; scaffold1841 TRF Tandem_Repeat 87073 87127 74 + . . scaffold1841 GLEAN promoter 95352 96351 0.932026 - . ID=CGI_10008271; scaffold1841 GLEAN promoter 96189 97188 0.999221 + . ID=CGI_10008272; scaffold1841 GLEAN mRNA 97189 99894 0.999221 + . ID=CGI_10008272; scaffold1841 GLEAN mRNA 102294 122510 0.525288 - . ID=CGI_10008273; scaffold1841 WUBlastX LTR_Pao 104019 104447 34 - . . scaffold1841 TRF Tandem_Repeat 106478 106569 175 + . . scaffold1841 TRF Tandem_Repeat 108623 108666 72 + . . scaffold1841 GLEAN promoter 116026 117025 0.909696 + . ID=CGI_10008274; scaffold1841 GLEAN mRNA 117026 133379 0.909696 + . ID=CGI_10008274; scaffold1841 GLEAN promoter 122511 123510 0.525288 - . ID=CGI_10008273; scaffold1841 GLEAN mRNA 135227 136525 0.999646 - . ID=CGI_10008275; scaffold1841 GLEAN promoter 136526 137525 0.999646 - . ID=CGI_10008275; scaffold1841 GLEAN promoter 139597 140596 0.999996 + . ID=CGI_10008276; scaffold1841 GLEAN mRNA 140597 143423 0.999996 + . ID=CGI_10008276; scaffold1841 GLEAN promoter 146657 147656 0.99815 + . ID=CGI_10008277; scaffold1841 GLEAN mRNA 147657 158681 0.99815 + . ID=CGI_10008277; scaffold1841 TRF Tandem_Repeat 157870 157929 111 + . . scaffold1841 GLEAN promoter 160407 161406 0.99323 + . ID=CGI_10008278; scaffold1841 GLEAN mRNA 161407 163351 0.99323 + . ID=CGI_10008278; scaffold1841 GLEAN mRNA 164952 171960 0.999675 - . ID=CGI_10008279; scaffold1841 GLEAN promoter 171961 172960 0.999675 - . ID=CGI_10008279; scaffold1841 TRF Tandem_Repeat 173921 174224 112 + . . scaffold1841 TRF Tandem_Repeat 173974 174172 141 + . . scaffold1841 TRF Tandem_Repeat 174078 174172 61 + . . scaffold1841 TRF Tandem_Repeat 188771 188815 90 + . . scaffold1841 TRF Tandem_Repeat 198566 198620 83 + . . scaffold1841 TRF Tandem_Repeat 204097 204141 90 + . . scaffold1842 GLEAN mRNA 42810 63379 0.990768 - . ID=CGI_10003201; scaffold1842 TRF Tandem_Repeat 48022 48195 200 + . . scaffold1842 TRF Tandem_Repeat 49426 49455 60 + . . scaffold1842 TRF Tandem_Repeat 52665 52696 64 + . . scaffold1842 TRF Tandem_Repeat 54552 54904 535 + . . scaffold1842 TRF Tandem_Repeat 54552 54904 544 + . . scaffold1842 TRF Tandem_Repeat 54702 54801 60 + . . scaffold1842 WUBlastX LINE_L2 58675 59151 101 - . . scaffold1842 GLEAN promoter 63380 64379 0.990768 - . ID=CGI_10003201; scaffold1843 GLEAN mRNA 712 13371 0.555009 - . ID=CGI_10011881; scaffold1843 GLEAN promoter 4897 5896 0.64853 + . ID=CGI_10011882; scaffold1843 GLEAN mRNA 5897 9296 0.64853 + . ID=CGI_10011882; scaffold1843 GLEAN promoter 13372 14371 0.555009 - . ID=CGI_10011881; scaffold1843 TRF Tandem_Repeat 14478 14783 481 + . . scaffold1843 TRF Tandem_Repeat 14675 14857 109 + . . scaffold1843 TRF Tandem_Repeat 15256 15472 199 + . . scaffold1843 TRF Tandem_Repeat 27468 27504 65 + . . scaffold1843 WUBlastX DNA_hAT-hATw 27958 28119 23 - . . scaffold1843 WUBlastX LINE_L2 29571 30962 1002 - . . scaffold1843 WUBlastX LINE_Jockey 30399 31073 205 - . . scaffold1843 TRF Tandem_Repeat 45534 45568 52 + . . scaffold1843 TRF Tandem_Repeat 45618 45677 111 + . . scaffold1843 TRF Tandem_Repeat 49360 50041 902 + . . scaffold1843 TRF Tandem_Repeat 49360 50041 853 + . . scaffold1843 TRF Tandem_Repeat 50389 50438 100 + . . scaffold1843 TRF Tandem_Repeat 54637 54682 92 + . . scaffold1843 TRF Tandem_Repeat 63907 64171 404 + . . scaffold1843 TRF Tandem_Repeat 64219 64266 80 + . . scaffold1843 WUBlastX LTR_Pao 83151 85529 1980 + . . scaffold1843 WUBlastX DNA_TcMar-Marin 87791 87997 58 + . . scaffold1843 WUBlastX LINE_L2 89259 89738 46 + . . scaffold1843 WUBlastX LINE_L1 89286 89831 40 + . . scaffold1843 WUBlastX LINE_L1-Tx1 89385 89708 66 + . . scaffold1843 TRF Tandem_Repeat 90147 90181 52 + . . scaffold1843 WUBlastX LTR_Pao 90253 91278 348 + . . scaffold1843 WUBlastX LTR_Pao 91238 92236 411 + . . scaffold1843 WUBlastX LTR_Pao 92208 92336 81 + . . scaffold1843 WUBlastX LTR_Pao 92223 92519 71 + . . scaffold1843 WUBlastX LTR_Pao 93831 93872 26 + . . scaffold1843 WUBlastX LTR_Pao 93840 94019 55 + . . scaffold1843 WUBlastX LTR_Pao 93918 94022 97 + . . scaffold1843 WUBlastX LTR_Pao 94025 94375 237 + . . scaffold1843 WUBlastX LTR_Pao 95332 95451 25 + . . scaffold1843 WUBlastX LTR_Pao 95690 96058 214 + . . scaffold1843 WUBlastX LTR_Pao 96052 96987 235 + . . scaffold1843 WUBlastX LTR_Pao 96064 96450 310 + . . scaffold1843 WUBlastX LTR_Pao 96794 97963 339 + . . scaffold1843 WUBlastX LTR_Pao 97106 98020 718 + . . scaffold1843 WUBlastX LINE_RTE-X 99313 99423 20 + . . scaffold1843 WUBlastX LINE_RTE-X 99340 99474 22 + . . scaffold1843 WUBlastX LINE_RTE-X 99388 99489 24 + . . scaffold1843 WUBlastX LINE_RTE-X 99480 99569 34 + . . scaffold1843 WUBlastX LINE_RTE-X 99668 99778 27 + . . scaffold1843 WUBlastX LINE_RTE-X 100093 100155 33 + . . scaffold1843 WUBlastX LINE_RTE-X 100223 100630 155 + . . scaffold1843 WUBlastX LINE_RTE-X 100226 100708 60 + . . scaffold1843 TRF Tandem_Repeat 100779 100825 94 + . . scaffold1843 WUBlastX LINE_CR1-L2 108157 108315 32 - . . scaffold1843 TRF Tandem_Repeat 114828 115358 857 + . . scaffold1843 TRF Tandem_Repeat 120703 120732 60 + . . scaffold1843 GLEAN promoter 121507 122506 0.995188 + . ID=CGI_10011883; scaffold1843 GLEAN mRNA 122507 128008 0.995188 + . ID=CGI_10011883; scaffold1843 GLEAN mRNA 128357 131040 0.994433 - . ID=CGI_10011884; scaffold1843 GLEAN promoter 131041 132040 0.994433 - . ID=CGI_10011884; scaffold1843 TRF Tandem_Repeat 132855 132915 113 + . . scaffold1843 TRF Tandem_Repeat 133043 133098 112 + . . scaffold1843 WUBlastX LINE_Jockey 134348 134488 24 + . . scaffold1843 WUBlastX LINE_CR1 134668 134796 23 + . . scaffold1843 WUBlastX LINE_CR1 135187 136005 111 + . . scaffold1843 WUBlastX LINE_L2 135388 136344 514 + . . scaffold1843 GLEAN mRNA 139708 143046 0.997779 - . ID=CGI_10011885; scaffold1843 GLEAN promoter 143047 144046 0.997779 - . ID=CGI_10011885; scaffold1843 GLEAN mRNA 143544 158962 0.99944 - . ID=CGI_10011886; scaffold1843 TRF Tandem_Repeat 150721 152115 889 + . . scaffold1843 TRF Tandem_Repeat 150740 152114 1090 + . . scaffold1843 TRF Tandem_Repeat 150817 152088 1340 + . . scaffold1843 TRF Tandem_Repeat 153773 153806 50 + . . scaffold1843 GLEAN promoter 158685 159684 0.995496 + . ID=CGI_10011887; scaffold1843 GLEAN promoter 158963 159962 0.99944 - . ID=CGI_10011886; scaffold1843 GLEAN mRNA 159685 162723 0.995496 + . ID=CGI_10011887; scaffold1843 GLEAN mRNA 172338 174129 1 - . ID=CGI_10011888; scaffold1843 TRF Tandem_Repeat 173642 173677 72 + . . scaffold1843 TRF Tandem_Repeat 173720 173786 134 + . . scaffold1843 GLEAN promoter 174130 175129 1 - . ID=CGI_10011888; scaffold1843 GLEAN promoter 174952 175951 1 + . ID=CGI_10011889; scaffold1843 GLEAN mRNA 175952 180778 1 + . ID=CGI_10011889; scaffold1843 TRF Tandem_Repeat 179131 179356 416 + . . scaffold1843 TRF Tandem_Repeat 185913 186012 110 + . . scaffold1843 GLEAN mRNA 190121 200003 0.999995 - . ID=CGI_10011891; scaffold1843 TRF Tandem_Repeat 197476 197501 52 + . . scaffold1843 GLEAN promoter 200004 201003 0.999995 - . ID=CGI_10011891; scaffold1843 WUBlastX LINE_CR1 207226 207333 47 + . . scaffold1843 WUBlastX LINE_L1-Tx1 207247 207696 97 + . . scaffold1843 WUBlastX LINE_L1 207346 207696 130 + . . scaffold1843 WUBlastX LINE_L1-Tx1 207385 207777 56 + . . scaffold1843 WUBlastX LINE_L1-Tx1 207403 207696 182 + . . scaffold1843 WUBlastX LINE_CR1 208180 208356 47 + . . scaffold1843 WUBlastX LINE_CR1 208210 208365 57 + . . scaffold1843 TRF Tandem_Repeat 218668 218775 73 + . . scaffold1843 TRF Tandem_Repeat 218689 218776 68 + . . scaffold1843 WUBlastX DNA_Harbinger 219955 220350 170 + . . scaffold1843 WUBlastX DNA_Harbinger 219964 220461 170 + . . scaffold1843 GLEAN mRNA 221948 222175 0.997629 - . ID=CGI_10011892; scaffold1843 GLEAN promoter 222176 223175 0.997629 - . ID=CGI_10011892; scaffold1843 GLEAN mRNA 222922 223080 0.519765 - . ID=CGI_10011893; scaffold1843 GLEAN promoter 223081 224080 0.519765 - . ID=CGI_10011893; scaffold1843 WUBlastX LTR_Gypsy 223153 224454 1169 - . . scaffold1843 TRF Tandem_Repeat 233131 233179 62 + . . scaffold1843 TRF Tandem_Repeat 233140 233179 53 + . . scaffold1843 GLEAN promoter 233260 234259 1 + . ID=CGI_10011894; scaffold1843 TRF Tandem_Repeat 233616 233847 344 + . . scaffold1843 GLEAN mRNA 234260 235680 1 + . ID=CGI_10011894; scaffold1843 GLEAN promoter 236857 237856 0.999998 + . ID=CGI_10011895; scaffold1843 GLEAN mRNA 237857 239283 0.999998 + . ID=CGI_10011895; scaffold1843 TRF Tandem_Repeat 241413 241480 76 + . . scaffold1843 TRF Tandem_Repeat 249554 249618 82 + . . scaffold1843 TRF Tandem_Repeat 253236 253335 155 + . . scaffold1843 TRF Tandem_Repeat 253268 253329 64 + . . scaffold1843 TRF Tandem_Repeat 253692 253751 120 + . . scaffold1843 WUBlastX LINE_CR1-L2 254891 255394 93 - . . scaffold1843 WUBlastX LINE_L2 254891 255316 156 - . . scaffold1843 WUBlastX LTR_Gypsy 257444 257473 28 - . . scaffold1843 WUBlastX LTR_Gypsy 257719 259071 953 - . . scaffold1843 WUBlastX LTR_Gypsy 259031 261715 1705 - . . scaffold1843 GLEAN mRNA 268614 269122 0.986922 - . ID=CGI_10011896; scaffold1843 GLEAN promoter 269123 270122 0.986922 - . ID=CGI_10011896; scaffold1843 TRF Tandem_Repeat 270221 270273 97 + . . scaffold1843 TRF Tandem_Repeat 275277 275303 54 + . . scaffold1843 TRF Tandem_Repeat 288684 288749 105 + . . scaffold1843 TRF Tandem_Repeat 294717 294781 112 + . . scaffold1843 TRF Tandem_Repeat 296225 296286 106 + . . scaffold1843 TRF Tandem_Repeat 296675 296724 75 + . . scaffold1843 TRF Tandem_Repeat 300906 302187 1506 + . . scaffold1843 TRF Tandem_Repeat 300906 302187 1504 + . . scaffold1843 WUBlastX LINE_L2 304135 304641 170 - . . scaffold1844 GLEAN promoter 1 112 1 + . ID=CGI_10006612; scaffold1844 GLEAN mRNA 113 6327 1 + . ID=CGI_10006612; scaffold1844 TRF Tandem_Repeat 3587 3810 412 + . . scaffold1844 GLEAN promoter 7441 8440 0.999676 + . ID=CGI_10006613; scaffold1844 GLEAN mRNA 8441 19589 0.999676 + . ID=CGI_10006613; scaffold1844 GLEAN mRNA 23568 47358 0.998732 - . ID=CGI_10006614; scaffold1844 GLEAN promoter 47359 48358 0.998732 - . ID=CGI_10006614; scaffold1844 TRF Tandem_Repeat 48102 48130 58 + . . scaffold1844 WUBlastX LINE_RTE-X 48277 48708 107 - . . scaffold1844 WUBlastX LINE_RTE-X 48400 48765 170 - . . scaffold1844 WUBlastX LINE_RTE-X 48672 49094 172 - . . scaffold1844 WUBlastX LINE_RTE-X 49613 49987 73 - . . scaffold1844 WUBlastX LINE_RTE-X 49742 50050 88 - . . scaffold1844 GLEAN promoter 53823 54822 0.966014 + . ID=CGI_10006615; scaffold1844 GLEAN mRNA 54823 56776 0.966014 + . ID=CGI_10006615; scaffold1844 GLEAN promoter 62734 63733 1 + . ID=CGI_10006616; scaffold1844 GLEAN mRNA 63734 67985 1 + . ID=CGI_10006616; scaffold1844 TRF Tandem_Repeat 69889 69927 78 + . . scaffold1844 GLEAN promoter 98160 99159 0.999947 + . ID=CGI_10006617; scaffold1844 GLEAN mRNA 99160 105796 0.999947 + . ID=CGI_10006617; scaffold1844 TRF Tandem_Repeat 101313 101433 118 + . . scaffold1844 TRF Tandem_Repeat 101671 101705 70 + . . scaffold1844 TRF Tandem_Repeat 101792 101819 56 + . . scaffold1844 TRF Tandem_Repeat 102672 102703 55 + . . scaffold1844 TRF Tandem_Repeat 102919 103024 99 + . . scaffold1844 GLEAN promoter 105143 106142 0.999947 + . ID=CGI_10006618; scaffold1844 GLEAN mRNA 106143 107888 0.999947 + . ID=CGI_10006618; scaffold1844 GLEAN promoter 107283 108282 0.924542 + . ID=CGI_10006619; scaffold1844 GLEAN mRNA 108283 134853 0.924542 + . ID=CGI_10006619; scaffold1844 WUBlastX LINE_L1 125437 125562 27 + . . scaffold1844 WUBlastX LINE_RTE-X 125499 125591 25 + . . scaffold1844 WUBlastX LINE_RTE-X 125630 125794 30 + . . scaffold1844 WUBlastX LINE_RTE-X 125702 125800 56 + . . scaffold1844 WUBlastX LINE_RTE-BovB 125717 125818 29 + . . scaffold1844 WUBlastX LINE_RTE-X 125818 126459 350 + . . scaffold1844 WUBlastX LINE_RTE-X 126422 126712 114 + . . scaffold1844 WUBlastX LINE_RTE-X 126669 127493 161 + . . scaffold1844 WUBlastX DNA_Crypton 134994 135200 107 + . . scaffold1844 WUBlastX LINE_L2 135876 136214 121 + . . scaffold1844 WUBlastX LINE_L2 136011 136214 137 + . . scaffold1844 WUBlastX LINE_L2 136189 137079 171 + . . scaffold1844 WUBlastX LINE_L2 137114 137233 21 + . . scaffold1844 WUBlastX LINE_L2 137135 137221 29 + . . scaffold1844 WUBlastX LINE_L2 137135 137395 28 + . . scaffold1844 TRF Tandem_Repeat 140668 140780 75 + . . scaffold1844 TRF Tandem_Repeat 140668 140715 60 + . . scaffold1844 TRF Tandem_Repeat 140677 140765 61 + . . scaffold1844 GLEAN promoter 146487 147486 0.232183 + . ID=CGI_10006620; scaffold1844 GLEAN mRNA 147487 152666 0.232183 + . ID=CGI_10006620; scaffold1844 TRF Tandem_Repeat 150973 151159 311 + . . scaffold1844 TRF Tandem_Repeat 152725 152770 58 + . . scaffold1844 WUBlastX LINE_L1-Tx1 155522 156547 435 + . . scaffold1844 WUBlastX LINE_L1-Tx1 156558 157286 281 + . . scaffold1845 TRF Tandem_Repeat 7208 7300 186 + . . scaffold1845 TRF Tandem_Repeat 7343 7487 99 + . . scaffold1845 TRF Tandem_Repeat 7343 7487 78 + . . scaffold1845 TRF Tandem_Repeat 8110 8149 80 + . . scaffold1845 TRF Tandem_Repeat 11922 11975 90 + . . scaffold1845 TRF Tandem_Repeat 12479 12513 52 + . . scaffold1845 GLEAN promoter 32705 33704 0.694021 + . ID=CGI_10011981; scaffold1845 GLEAN mRNA 33705 35498 0.694021 + . ID=CGI_10011981; scaffold1845 GLEAN promoter 54051 55050 0.995237 + . ID=CGI_10011982; scaffold1845 GLEAN mRNA 55051 56943 0.995237 + . ID=CGI_10011982; scaffold1845 GLEAN mRNA 59681 63497 0.72205 - . ID=CGI_10011983; scaffold1845 GLEAN promoter 63498 64497 0.72205 - . ID=CGI_10011983; scaffold1845 GLEAN mRNA 66140 67345 0.982976 - . ID=CGI_10011984; scaffold1845 GLEAN promoter 67346 68345 0.982976 - . ID=CGI_10011984; scaffold1845 GLEAN mRNA 71168 73063 0.777767 - . ID=CGI_10011985; scaffold1845 GLEAN promoter 73064 74063 0.777767 - . ID=CGI_10011985; scaffold1845 GLEAN mRNA 77020 85714 0.399666 - . ID=CGI_10011986; scaffold1845 TRF Tandem_Repeat 80445 80620 307 + . . scaffold1845 TRF Tandem_Repeat 80769 80843 107 + . . scaffold1845 GLEAN promoter 85715 86714 0.399666 - . ID=CGI_10011986; scaffold1845 GLEAN promoter 90250 91249 0.999998 + . ID=CGI_10011987; scaffold1845 GLEAN mRNA 91250 92968 0.999998 + . ID=CGI_10011987; scaffold1845 GLEAN mRNA 98469 120392 0.999027 - . ID=CGI_10011988; scaffold1845 GLEAN promoter 103598 104597 0.999661 + . ID=CGI_10011989; scaffold1845 GLEAN mRNA 104598 106286 0.999661 + . ID=CGI_10011989; scaffold1845 GLEAN promoter 108001 109000 0.988799 + . ID=CGI_10011990; scaffold1845 GLEAN mRNA 109001 120334 0.988799 + . ID=CGI_10011990; scaffold1845 TRF Tandem_Repeat 112697 112729 66 + . . scaffold1845 TRF Tandem_Repeat 113930 113972 86 + . . scaffold1845 GLEAN promoter 120393 121392 0.999027 - . ID=CGI_10011988; scaffold1845 GLEAN mRNA 121322 123043 0.772354 - . ID=CGI_10011991; scaffold1845 GLEAN promoter 123044 124043 0.772354 - . ID=CGI_10011991; scaffold1845 GLEAN promoter 124570 125569 1 + . ID=CGI_10011992; scaffold1845 GLEAN mRNA 125570 128146 1 + . ID=CGI_10011992; scaffold1845 GLEAN mRNA 129180 130913 0.999965 - . ID=CGI_10011993; scaffold1845 WUBlastX LTR_ERV1 130017 130415 45 - . . scaffold1845 GLEAN promoter 130914 131913 0.999965 - . ID=CGI_10011993; scaffold1845 TRF Tandem_Repeat 136088 136849 579 + . . scaffold1845 GLEAN mRNA 137873 139480 1 - . ID=CGI_10011994; scaffold1845 WUBlastX DNA_TcMar-Tigge 138929 139186 24 - . . scaffold1845 GLEAN promoter 139481 140480 1 - . ID=CGI_10011994; scaffold1845 WUBlastX LINE_L1-Tx1 144017 144142 36 + . . scaffold1845 WUBlastX LINE_L1-Tx1 144038 144142 42 + . . scaffold1845 WUBlastX LINE_L1 144050 144178 20 + . . scaffold1845 WUBlastX LINE_L1 144210 144638 65 + . . scaffold1845 WUBlastX LINE_L1-Tx1 144210 144557 132 + . . scaffold1845 WUBlastX LINE_L1-Tx1 145839 146045 42 + . . scaffold1845 WUBlastX LINE_L1-Tx1 146081 146773 34 + . . scaffold1845 GLEAN mRNA 150965 157827 0.99999 - . ID=CGI_10011995; scaffold1845 GLEAN promoter 157828 158827 0.99999 - . ID=CGI_10011995; scaffold1845 GLEAN mRNA 159167 160891 0.999999 - . ID=CGI_10011996; scaffold1845 GLEAN promoter 160892 161891 0.999999 - . ID=CGI_10011996; scaffold1845 WUBlastX LTR_Gypsy 169085 169720 131 + . . scaffold1845 WUBlastX LTR_Gypsy-Cigr 169118 169957 58 + . . scaffold1845 WUBlastX LTR_Gypsy 169910 170086 33 + . . scaffold1845 WUBlastX LTR_Gypsy 169931 170143 30 + . . scaffold1845 WUBlastX LTR_Gypsy 170024 170185 25 + . . scaffold1845 WUBlastX LTR_Gypsy 170223 171329 261 + . . scaffold1845 WUBlastX LTR_Gypsy 171048 171383 85 + . . scaffold1845 WUBlastX LTR_Gypsy 171093 171458 34 + . . scaffold1845 GLEAN mRNA 174981 176717 0.771581 - . ID=CGI_10011997; scaffold1845 GLEAN promoter 176718 177717 0.771581 - . ID=CGI_10011997; scaffold1845 GLEAN mRNA 188535 190271 1 - . ID=CGI_10011998; scaffold1845 GLEAN promoter 190272 191271 1 - . ID=CGI_10011998; scaffold1845 TRF Tandem_Repeat 196250 196303 108 + . . scaffold1845 GLEAN mRNA 198857 200590 0.999989 - . ID=CGI_10011999; scaffold1845 GLEAN promoter 200591 201590 0.999989 - . ID=CGI_10011999; scaffold1845 GLEAN mRNA 204191 222810 0.999988 - . ID=CGI_10012000; scaffold1845 TRF Tandem_Repeat 214009 214896 1050 + . . scaffold1845 TRF Tandem_Repeat 217175 217226 86 + . . scaffold1845 TRF Tandem_Repeat 217175 217232 73 + . . scaffold1845 GLEAN promoter 222811 223810 0.999988 - . ID=CGI_10012000; scaffold1845 WUBlastX LINE_RTE-X 223589 225502 745 - . . scaffold1845 WUBlastX LINE_CR1 226025 226141 21 - . . scaffold1845 WUBlastX LINE_CR1 226058 226141 23 - . . scaffold1845 TRF Tandem_Repeat 229888 230131 138 + . . scaffold1845 TRF Tandem_Repeat 229938 230152 60 + . . scaffold1845 TRF Tandem_Repeat 234928 234980 106 + . . scaffold1845 GLEAN promoter 241227 242226 1 + . ID=CGI_10012001; scaffold1845 GLEAN mRNA 242227 244534 1 + . ID=CGI_10012001; scaffold1845 TRF Tandem_Repeat 250219 250268 100 + . . scaffold1845 WUBlastX LINE_RTE-BovB 260629 260985 122 - . . scaffold1845 WUBlastX LINE_RTE-BovB 260719 260982 160 - . . scaffold1845 WUBlastX LINE_RTE-BovB 260725 261042 110 - . . scaffold1845 WUBlastX LINE_RTE-BovB 260991 261194 73 - . . scaffold1845 GLEAN mRNA 266069 272510 1 - . ID=CGI_10012002; scaffold1845 GLEAN promoter 272511 273510 1 - . ID=CGI_10012002; scaffold1845 GLEAN promoter 274120 275119 0.586254 + . ID=CGI_10012003; scaffold1845 GLEAN mRNA 275120 281258 0.586254 + . ID=CGI_10012003; scaffold1845 GLEAN mRNA 287779 288027 0.618241 - . ID=CGI_10012004; scaffold1845 GLEAN promoter 288028 289027 0.618241 - . ID=CGI_10012004; scaffold1845 TRF Tandem_Repeat 288065 288099 70 + . . scaffold1845 TRF Tandem_Repeat 289905 290046 128 + . . scaffold1845 WUBlastX RC_Helitron 290095 290892 104 + . . scaffold1845 WUBlastX RC_Helitron 290242 290892 209 + . . scaffold1845 WUBlastX RC_Helitron 290898 291494 246 + . . scaffold1845 WUBlastX RC_Helitron 291631 291675 20 + . . scaffold1845 WUBlastX RC_Helitron 291710 291805 38 + . . scaffold1845 WUBlastX RC_Helitron 291819 291899 22 + . . scaffold1845 WUBlastX RC_Helitron 291852 291899 37 + . . scaffold1845 WUBlastX LINE_L2 291994 292464 40 + . . scaffold1845 WUBlastX LINE_L2 292078 292452 44 + . . scaffold1845 WUBlastX RC_Helitron 292490 292600 28 + . . scaffold1845 WUBlastX DNA_Sola 296529 296651 34 + . . scaffold1845 WUBlastX DNA_Sola 297014 297088 43 + . . scaffold1845 WUBlastX LINE_CR1 298768 298968 112 - . . scaffold1845 WUBlastX LINE_CR1 298950 299108 26 - . . scaffold1845 WUBlastX LINE_CR1 298974 299084 39 - . . scaffold1845 WUBlastX DNA_Maverick 301491 301733 72 - . . scaffold1845 WUBlastX DNA_Maverick 301536 301739 73 - . . scaffold1845 WUBlastX DNA_Maverick 301596 301751 87 - . . scaffold1845 WUBlastX LTR_Gypsy 302695 302883 29 - . . scaffold1845 WUBlastX DNA_Maverick 302767 303813 773 - . . scaffold1845 WUBlastX DNA_Maverick 303893 304246 80 - . . scaffold1845 WUBlastX DNA_Maverick 304013 304273 88 - . . scaffold1845 WUBlastX DNA_Maverick 304061 304699 44 - . . scaffold1845 WUBlastX DNA_Maverick 306347 306940 376 - . . scaffold1846 GLEAN promoter 1 111 0.24377 + . ID=CGI_10004553; scaffold1846 GLEAN mRNA 112 2781 0.24377 + . ID=CGI_10004553; scaffold1846 TRF Tandem_Repeat 26897 26942 74 + . . scaffold1846 TRF Tandem_Repeat 26897 26945 53 + . . scaffold1846 WUBlastX LTR_DIRS 41048 41527 243 - . . scaffold1846 WUBlastX LTR_DIRS 41547 41678 34 - . . scaffold1846 GLEAN mRNA 48500 58409 0.999676 - . ID=CGI_10004554; scaffold1846 GLEAN promoter 58410 59409 0.999676 - . ID=CGI_10004554; scaffold1846 GLEAN promoter 62344 63343 0.999675 + . ID=CGI_10004555; scaffold1846 GLEAN mRNA 63344 65709 0.999675 + . ID=CGI_10004555; scaffold1846 WUBlastX LINE_L1-Tx1 67451 68626 170 - . . scaffold1846 TRF Tandem_Repeat 68765 69131 664 + . . scaffold1846 TRF Tandem_Repeat 72418 72921 578 + . . scaffold1846 TRF Tandem_Repeat 72418 72884 709 + . . scaffold1846 GLEAN mRNA 76593 92641 0.714897 - . ID=CGI_10004556; scaffold1846 TRF Tandem_Repeat 82935 83277 195 + . . scaffold1846 TRF Tandem_Repeat 82974 83314 219 + . . scaffold1846 TRF Tandem_Repeat 89854 89895 84 + . . scaffold1846 GLEAN promoter 92642 93641 0.714897 - . ID=CGI_10004556; scaffold1846 GLEAN promoter 93656 94655 0.797703 + . ID=CGI_10004557; scaffold1846 GLEAN mRNA 94656 97406 0.797703 + . ID=CGI_10004557; scaffold1846 TRF Tandem_Repeat 103129 103487 567 + . . scaffold1847 WUBlastX LINE_L1-Tx1 2294 4306 1324 + . . scaffold1847 GLEAN mRNA 12116 19877 0.999289 - . ID=CGI_10003457; scaffold1847 TRF Tandem_Repeat 14529 14584 112 + . . scaffold1847 TRF Tandem_Repeat 14584 14627 79 + . . scaffold1847 GLEAN promoter 19878 20877 0.999289 - . ID=CGI_10003457; scaffold1847 WUBlastX LTR_Pao 21921 22718 34 + . . scaffold1847 WUBlastX LTR_Pao 22272 23237 55 + . . scaffold1847 WUBlastX LTR_Pao 22380 22790 69 + . . scaffold1847 WUBlastX LTR_Pao 22979 27865 2168 + . . scaffold1847 WUBlastX LTR_Pao 23813 27868 3196 + . . scaffold1847 TRF Tandem_Repeat 32569 32625 114 + . . scaffold1847 TRF Tandem_Repeat 35255 35288 68 + . . scaffold1847 GLEAN promoter 40168 41167 0.942746 + . ID=CGI_10003458; scaffold1847 GLEAN mRNA 41168 49978 0.942746 + . ID=CGI_10003458; scaffold1847 WUBlastX LTR_DIRS 50434 50574 25 + . . scaffold1847 WUBlastX LTR_DIRS 50567 50752 73 + . . scaffold1847 WUBlastX LTR_DIRS 50808 51317 125 + . . scaffold1847 WUBlastX LTR_DIRS? 52088 52627 82 + . . scaffold1847 WUBlastX LTR_DIRS? 52627 52728 51 + . . scaffold1847 GLEAN promoter 56739 57738 0.990454 + . ID=CGI_10003459; scaffold1847 TRF Tandem_Repeat 57472 57629 107 + . . scaffold1847 GLEAN mRNA 57739 59391 0.990454 + . ID=CGI_10003459; scaffold1847 WUBlastX LINE_RTE-X 67396 67671 48 - . . scaffold1847 WUBlastX LINE_RTE-X 67513 67671 59 - . . scaffold1847 WUBlastX LINE_RTE-X 67722 68738 306 - . . scaffold1847 WUBlastX LINE_RTE-X 67908 68738 344 - . . scaffold1847 GLEAN promoter 71284 72283 0.996199 + . ID=CGI_10003460; scaffold1847 WUBlastX LTR_Gypsy 71540 72106 64 + . . scaffold1847 WUBlastX LTR_Gypsy 71705 72166 89 + . . scaffold1847 GLEAN mRNA 72284 72580 0.996199 + . ID=CGI_10003460; scaffold1847 WUBlastX LTR_Gypsy 72692 74383 939 + . . scaffold1848 GLEAN promoter 13270 14269 0.999996 + . ID=CGI_10006420; scaffold1848 GLEAN mRNA 14270 16364 0.999996 + . ID=CGI_10006420; scaffold1848 GLEAN promoter 15929 16928 0.999607 + . ID=CGI_10006421; scaffold1848 GLEAN mRNA 16929 21032 0.999607 + . ID=CGI_10006421; scaffold1848 GLEAN mRNA 20936 37386 1 - . ID=CGI_10006422; scaffold1848 GLEAN promoter 36854 37853 0.9996 + . ID=CGI_10006423; scaffold1848 GLEAN promoter 37387 38386 1 - . ID=CGI_10006422; scaffold1848 GLEAN mRNA 37854 44069 0.9996 + . ID=CGI_10006423; scaffold1848 GLEAN mRNA 45049 50404 0.732982 - . ID=CGI_10006424; scaffold1848 GLEAN promoter 50405 51404 0.732982 - . ID=CGI_10006424; scaffold1848 GLEAN mRNA 54858 64498 0.497688 - . ID=CGI_10006425; scaffold1848 TRF Tandem_Repeat 60596 60647 70 + . . scaffold1848 GLEAN promoter 64499 65498 0.497688 - . ID=CGI_10006425; scaffold1848 GLEAN mRNA 67364 96706 0.748182 - . ID=CGI_10006426; scaffold1848 GLEAN promoter 70203 71202 0.499408 + . ID=CGI_10006427; scaffold1848 GLEAN mRNA 71203 103213 0.499408 + . ID=CGI_10006427; scaffold1848 TRF Tandem_Repeat 77231 77833 620 + . . scaffold1848 TRF Tandem_Repeat 92165 94351 2733 + . . scaffold1848 GLEAN promoter 96707 97706 0.748182 - . ID=CGI_10006426; scaffold1848 GLEAN promoter 103561 104560 0.991041 + . ID=CGI_10006428; scaffold1848 GLEAN mRNA 104561 115420 0.991041 + . ID=CGI_10006428; scaffold1848 WUBlastX LINE_RTE-X 116796 117077 53 + . . scaffold1848 WUBlastX LINE_RTE-X 116895 117227 33 + . . scaffold1848 WUBlastX LINE_RTE-X 116895 117110 79 + . . scaffold1848 TRF Tandem_Repeat 117263 117322 51 + . . scaffold1848 WUBlastX LINE_RTE-X 117541 117792 54 - . . scaffold1848 WUBlastX LINE_RTE-X 117574 118218 45 - . . scaffold1848 WUBlastX LINE_RTE-X 117610 117789 89 - . . scaffold1848 WUBlastX LINE_L1-Tx1 117809 117955 48 - . . scaffold1848 TRF Tandem_Repeat 129403 129503 168 + . . scaffold1848 TRF Tandem_Repeat 130183 130235 106 + . . scaffold1848 GLEAN mRNA 132452 133861 0.9815 - . ID=CGI_10006429; scaffold1848 GLEAN promoter 133862 134861 0.9815 - . ID=CGI_10006429; scaffold1848 TRF Tandem_Repeat 145681 145709 58 + . . scaffold1849 GLEAN promoter 1 13 1 + . ID=CGI_10015908; scaffold1849 GLEAN mRNA 14 1744 1 + . ID=CGI_10015908; scaffold1849 TRF Tandem_Repeat 162 227 132 + . . scaffold1849 GLEAN promoter 28905 29904 1 + . ID=CGI_10015909; scaffold1849 GLEAN mRNA 29905 31003 1 + . ID=CGI_10015909; scaffold1849 GLEAN promoter 31583 32582 0.651135 + . ID=CGI_10015910; scaffold1849 GLEAN mRNA 32583 40720 0.651135 + . ID=CGI_10015910; scaffold1849 TRF Tandem_Repeat 36508 36546 78 + . . scaffold1849 TRF Tandem_Repeat 43014 43041 56 + . . scaffold1849 GLEAN promoter 45473 46472 0.9993 + . ID=CGI_10015911; scaffold1849 GLEAN mRNA 46473 69373 0.9993 + . ID=CGI_10015911; scaffold1849 GLEAN mRNA 47126 51662 1 - . ID=CGI_10015912; scaffold1849 TRF Tandem_Repeat 50161 50541 753 + . . scaffold1849 GLEAN promoter 51663 52662 1 - . ID=CGI_10015912; scaffold1849 TRF Tandem_Repeat 55745 55838 179 + . . scaffold1849 GLEAN mRNA 64884 70565 0.702385 - . ID=CGI_10015913; scaffold1849 GLEAN promoter 70566 71565 0.702385 - . ID=CGI_10015913; scaffold1849 GLEAN mRNA 72001 111634 0.818968 - . ID=CGI_10015914; scaffold1849 TRF Tandem_Repeat 83390 84017 767 + . . scaffold1849 WUBlastX LINE_CR1 84183 84596 89 - . . scaffold1849 WUBlastX LINE_CR1 84213 85475 44 - . . scaffold1849 WUBlastX LINE_CR1 84294 85283 99 - . . scaffold1849 WUBlastX LINE_CR1 84309 85055 142 - . . scaffold1849 GLEAN promoter 84819 85818 0.999676 + . ID=CGI_10015915; scaffold1849 GLEAN mRNA 85819 107525 0.999676 + . ID=CGI_10015915; scaffold1849 TRF Tandem_Repeat 94844 94982 109 + . . scaffold1849 TRF Tandem_Repeat 95370 95667 331 + . . scaffold1849 TRF Tandem_Repeat 104560 104872 136 + . . scaffold1849 GLEAN promoter 111635 112634 0.818968 - . ID=CGI_10015914; scaffold1849 TRF Tandem_Repeat 113168 113338 126 + . . scaffold1849 TRF Tandem_Repeat 113337 113515 119 + . . scaffold1849 TRF Tandem_Repeat 113592 113678 104 + . . scaffold1849 GLEAN promoter 115524 116523 0.999999 + . ID=CGI_10015916; scaffold1849 GLEAN mRNA 116524 119832 0.999999 + . ID=CGI_10015916; scaffold1849 TRF Tandem_Repeat 127935 128563 482 + . . scaffold1849 TRF Tandem_Repeat 127935 128563 387 + . . scaffold1849 TRF Tandem_Repeat 127961 128560 276 + . . scaffold1849 TRF Tandem_Repeat 129987 130083 117 + . . scaffold1849 GLEAN promoter 131203 132202 0.7781 + . ID=CGI_10015917; scaffold1849 GLEAN mRNA 132203 140711 0.7781 + . ID=CGI_10015917; scaffold1849 WUBlastX LTR_Gypsy 132893 133384 57 - . . scaffold1849 WUBlastX LTR_Gypsy 132974 133759 505 - . . scaffold1849 WUBlastX LTR_Gypsy 133753 134088 234 - . . scaffold1849 WUBlastX LTR_Gypsy 134133 134342 42 - . . scaffold1849 WUBlastX LTR_Gypsy 134232 134750 285 - . . scaffold1849 WUBlastX LTR_Gypsy 134699 135022 177 - . . scaffold1849 WUBlastX DNA_TcMar-Tc1 140976 141275 181 - . . scaffold1849 WUBlastX DNA_TcMar-Tc1 140991 141335 103 - . . scaffold1849 WUBlastX DNA_TcMar-Tc1 141359 141532 35 - . . scaffold1849 WUBlastX DNA_TcMar-Tc1 141386 141532 42 - . . scaffold1849 WUBlastX DNA_TcMar-Tc1 141410 141532 48 - . . scaffold1849 WUBlastX DNA 141446 141559 22 - . . scaffold1849 WUBlastX DNA_TcMar-ISRm1 142205 142504 50 - . . scaffold1849 TRF Tandem_Repeat 142660 142721 52 + . . scaffold1849 TRF Tandem_Repeat 152922 152986 76 + . . scaffold1849 TRF Tandem_Repeat 162106 162130 50 + . . scaffold1849 TRF Tandem_Repeat 183291 183365 141 + . . scaffold1849 TRF Tandem_Repeat 202062 202101 71 + . . scaffold1849 WUBlastX LINE_RTE-X 203655 203918 59 + . . scaffold1849 WUBlastX LINE_RTE-X 203709 203936 61 + . . scaffold1849 TRF Tandem_Repeat 204993 205032 64 + . . scaffold1849 TRF Tandem_Repeat 210516 210562 94 + . . scaffold1849 TRF Tandem_Repeat 212755 212880 189 + . . scaffold1849 TRF Tandem_Repeat 212755 212880 189 + . . scaffold1849 WUBlastX LTR_Pao 219114 219782 217 - . . scaffold1849 WUBlastX LTR_Pao 219243 221297 718 - . . scaffold1849 WUBlastX LTR_Pao 229525 230901 107 - . . scaffold1849 WUBlastX LTR_Pao 230320 230943 119 - . . scaffold1849 WUBlastX LTR_Pao 230410 231195 98 - . . scaffold1849 WUBlastX LTR_Pao 230416 230880 131 - . . scaffold1849 TRF Tandem_Repeat 240559 240619 77 + . . scaffold1849 TRF Tandem_Repeat 240559 240610 59 + . . scaffold1849 TRF Tandem_Repeat 240560 240619 57 + . . scaffold1849 TRF Tandem_Repeat 251682 251764 166 + . . scaffold1849 TRF Tandem_Repeat 252938 252995 116 + . . scaffold1849 TRF Tandem_Repeat 269412 269451 80 + . . scaffold1849 TRF Tandem_Repeat 271010 271047 76 + . . scaffold1849 GLEAN promoter 274288 275287 1 + . ID=CGI_10015918; scaffold1849 GLEAN mRNA 275288 306940 1 + . ID=CGI_10015918; scaffold1849 TRF Tandem_Repeat 277543 278207 899 + . . scaffold1849 TRF Tandem_Repeat 279342 281101 2462 + . . scaffold1849 TRF Tandem_Repeat 279342 281101 2456 + . . scaffold1849 TRF Tandem_Repeat 320574 320626 99 + . . scaffold1849 TRF Tandem_Repeat 325827 325879 88 + . . scaffold1849 WUBlastX DNA_IS4EU 326681 327247 219 - . . scaffold1849 WUBlastX DNA_Kolobok-IS4 327187 327309 62 - . . scaffold1849 WUBlastX DNA_IS4EU 327794 328681 260 + . . scaffold1849 WUBlastX DNA_IS4EU 329596 329772 82 - . . scaffold1849 TRF Tandem_Repeat 332309 332350 75 + . . scaffold1849 GLEAN promoter 337735 338734 0.999607 + . ID=CGI_10015919; scaffold1849 GLEAN mRNA 338735 340065 0.999607 + . ID=CGI_10015919; scaffold1849 TRF Tandem_Repeat 342578 342627 82 + . . scaffold1849 TRF Tandem_Repeat 343717 343744 56 + . . scaffold1849 GLEAN promoter 344198 345197 0.662499 + . ID=CGI_10015920; scaffold1849 GLEAN mRNA 345198 370191 0.662499 + . ID=CGI_10015920; scaffold1849 WUBlastX LINE_L2 349432 349638 51 - . . scaffold1849 WUBlastX LINE_CR1-L2 349432 349596 70 - . . scaffold1849 WUBlastX LINE_CR1-L2 349596 349658 49 - . . scaffold1849 TRF Tandem_Repeat 372517 372684 164 + . . scaffold1849 TRF Tandem_Repeat 372528 372684 142 + . . scaffold1849 TRF Tandem_Repeat 372719 372830 91 + . . scaffold1849 TRF Tandem_Repeat 372915 373001 104 + . . scaffold1849 TRF Tandem_Repeat 373346 373867 293 + . . scaffold1849 TRF Tandem_Repeat 373353 373867 470 + . . scaffold1849 TRF Tandem_Repeat 374644 374675 64 + . . scaffold1849 TRF Tandem_Repeat 375966 376048 152 + . . scaffold1849 TRF Tandem_Repeat 376384 376429 83 + . . scaffold1849 GLEAN promoter 384434 385433 0.77512 + . ID=CGI_10015921; scaffold1849 GLEAN mRNA 385434 394817 0.77512 + . ID=CGI_10015921; scaffold1849 TRF Tandem_Repeat 418426 418450 50 + . . scaffold1849 TRF Tandem_Repeat 424829 425785 1247 + . . scaffold1849 TRF Tandem_Repeat 427660 427693 59 + . . scaffold1849 GLEAN promoter 430633 431632 0.92957 + . ID=CGI_10015922; scaffold1849 GLEAN mRNA 431633 445199 0.92957 + . ID=CGI_10015922; scaffold1849 TRF Tandem_Repeat 445573 445640 120 + . . scaffold1849 GLEAN promoter 445822 446821 1 + . ID=CGI_10015923; scaffold1849 GLEAN mRNA 446822 449136 1 + . ID=CGI_10015923; scaffold1849 TRF Tandem_Repeat 449447 449480 59 + . . scaffold1850 GLEAN promoter 1 487 1 + . ID=CGI_10009877; scaffold1850 GLEAN mRNA 488 4269 1 + . ID=CGI_10009877; scaffold1850 TRF Tandem_Repeat 1917 1970 108 + . . scaffold1850 GLEAN promoter 34845 35844 1 + . ID=CGI_10009878; scaffold1850 GLEAN mRNA 35845 38175 1 + . ID=CGI_10009878; scaffold1850 GLEAN promoter 39222 40221 1 + . ID=CGI_10009879; scaffold1850 GLEAN mRNA 40222 42084 1 + . ID=CGI_10009879; scaffold1850 GLEAN mRNA 44113 51041 0.999676 - . ID=CGI_10009880; scaffold1850 TRF Tandem_Repeat 48209 48255 94 + . . scaffold1850 GLEAN promoter 51042 52041 0.999676 - . ID=CGI_10009880; scaffold1850 GLEAN promoter 51225 52224 0.896648 + . ID=CGI_10009881; scaffold1850 GLEAN mRNA 52225 78239 0.896648 + . ID=CGI_10009881; scaffold1850 GLEAN mRNA 55417 67382 0.791674 - . ID=CGI_10009882; scaffold1850 TRF Tandem_Repeat 63717 63765 55 + . . scaffold1850 WUBlastX LINE_RTE-X 64093 64341 24 + . . scaffold1850 GLEAN promoter 67383 68382 0.791674 - . ID=CGI_10009882; scaffold1850 GLEAN promoter 78493 79492 1 + . ID=CGI_10009883; scaffold1850 GLEAN mRNA 79493 83919 1 + . ID=CGI_10009883; scaffold1850 TRF Tandem_Repeat 81273 81329 114 + . . scaffold1850 TRF Tandem_Repeat 81351 81377 54 + . . scaffold1850 GLEAN promoter 92167 93166 1 + . ID=CGI_10009884; scaffold1850 GLEAN mRNA 93167 94910 1 + . ID=CGI_10009884; scaffold1850 WUBlastX LTR_Gypsy 112896 113684 259 + . . scaffold1850 WUBlastX LTR_Gypsy 113040 113693 294 + . . scaffold1850 WUBlastX LTR_Gypsy 113175 113693 335 + . . scaffold1850 WUBlastX LTR_Gypsy 113709 113768 23 + . . scaffold1850 WUBlastX LTR_Gypsy 113735 114550 80 + . . scaffold1850 WUBlastX LTR_Gypsy-Cigr 113753 114139 205 + . . scaffold1850 WUBlastX LTR_Gypsy 113753 114214 159 + . . scaffold1850 WUBlastX LTR_Gypsy 114909 115115 32 + . . scaffold1850 WUBlastX LTR_Gypsy-Cigr 114948 115190 55 + . . scaffold1850 WUBlastX LTR_Gypsy 115005 115328 94 + . . scaffold1850 WUBlastX LTR_Gypsy 115014 115409 55 + . . scaffold1850 WUBlastX LTR_Gypsy 115532 116548 508 + . . scaffold1850 GLEAN promoter 116143 117142 1 + . ID=CGI_10009885; scaffold1850 WUBlastX LTR_Gypsy 116557 116961 50 + . . scaffold1850 WUBlastX LTR_Gypsy 116560 116742 75 + . . scaffold1850 GLEAN mRNA 117143 117683 1 + . ID=CGI_10009885; scaffold1850 TRF Tandem_Repeat 118777 118899 89 + . . scaffold1850 TRF Tandem_Repeat 118793 118915 185 + . . scaffold1850 TRF Tandem_Repeat 124350 128839 6778 + . . scaffold1850 GLEAN mRNA 129691 133447 1 - . ID=CGI_10009886; scaffold1850 GLEAN promoter 133448 134447 1 - . ID=CGI_10009886; scaffold1850 GLEAN promoter 135034 136033 0.993586 + . ID=CGI_10009887; scaffold1850 GLEAN mRNA 136034 140927 0.993586 + . ID=CGI_10009887; scaffold1850 TRF Tandem_Repeat 136784 136843 57 + . . scaffold1850 TRF Tandem_Repeat 137120 137194 143 + . . scaffold1850 TRF Tandem_Repeat 138394 138459 132 + . . scaffold1850 TRF Tandem_Repeat 138479 138510 64 + . . scaffold1850 GLEAN mRNA 141278 152491 0.49961 - . ID=CGI_10009888; scaffold1850 TRF Tandem_Repeat 142110 142150 82 + . . scaffold1850 TRF Tandem_Repeat 146569 146646 140 + . . scaffold1850 TRF Tandem_Repeat 146661 146699 62 + . . scaffold1850 TRF Tandem_Repeat 148308 148374 89 + . . scaffold1850 TRF Tandem_Repeat 148869 148902 50 + . . scaffold1850 GLEAN promoter 152492 153491 0.49961 - . ID=CGI_10009888; scaffold1850 GLEAN mRNA 153185 158300 1 - . ID=CGI_10009889; scaffold1850 TRF Tandem_Repeat 154783 154808 52 + . . scaffold1850 GLEAN promoter 158301 159300 1 - . ID=CGI_10009889; scaffold1850 TRF Tandem_Repeat 166223 166302 70 + . . scaffold1850 GLEAN mRNA 168494 175824 0.999905 - . ID=CGI_10009890; scaffold1850 TRF Tandem_Repeat 172751 172840 146 + . . scaffold1850 GLEAN promoter 175825 176824 0.999905 - . ID=CGI_10009890; scaffold1850 WUBlastX LINE_R2-Hero 177652 177801 64 - . . scaffold1850 GLEAN promoter 185003 186002 0.989701 + . ID=CGI_10009891; scaffold1850 GLEAN mRNA 186003 202663 0.989701 + . ID=CGI_10009891; scaffold1850 TRF Tandem_Repeat 198213 198579 671 + . . scaffold1850 GLEAN promoter 201964 202963 0.812877 + . ID=CGI_10009892; scaffold1850 TRF Tandem_Repeat 202675 202958 433 + . . scaffold1850 GLEAN mRNA 202964 219828 0.812877 + . ID=CGI_10009892; scaffold1850 TRF Tandem_Repeat 228578 229369 1077 + . . scaffold1850 TRF Tandem_Repeat 232664 232706 86 + . . scaffold1850 WUBlastX LTR_Gypsy 232748 234160 255 + . . scaffold1850 WUBlastX LTR_Gypsy 233509 234567 125 + . . scaffold1850 WUBlastX LTR_Gypsy 234501 234800 126 + . . scaffold1850 WUBlastX LTR_Gypsy 234564 234866 161 + . . scaffold1850 WUBlastX LTR_Gypsy 234564 234980 120 + . . scaffold1850 WUBlastX LTR_Gypsy 234985 235110 67 + . . scaffold1850 WUBlastX LTR_Gypsy 234994 235134 63 + . . scaffold1850 WUBlastX LTR_Gypsy 235000 235158 50 + . . scaffold1850 WUBlastX LTR_Gypsy 239484 239645 75 - . . scaffold1850 TRF Tandem_Repeat 240817 240849 66 + . . scaffold1850 WUBlastX LTR_Gypsy 241573 241980 99 + . . scaffold1850 WUBlastX LTR_Gypsy 241681 241980 140 + . . scaffold1850 WUBlastX LTR_Gypsy 241980 242471 45 + . . scaffold1850 WUBlastX LTR_Gypsy 242070 242282 51 + . . scaffold1850 WUBlastX LTR_Gypsy 242088 242207 54 + . . scaffold1850 WUBlastX LTR_Gypsy 242106 242264 53 + . . scaffold1850 WUBlastX LTR_Gypsy 242614 242718 33 + . . scaffold1850 WUBlastX LTR_Gypsy 242680 242733 20 + . . scaffold1850 WUBlastX LTR_Gypsy 242730 242819 37 + . . scaffold1850 WUBlastX LTR_Gypsy 242730 242864 36 + . . scaffold1850 WUBlastX LTR_Gypsy 243073 243792 287 + . . scaffold1850 WUBlastX LTR_Gypsy 243797 244321 305 + . . scaffold1850 WUBlastX LTR_Gypsy 243809 244597 257 + . . scaffold1850 WUBlastX LTR_Gypsy 244543 245031 290 + . . scaffold1850 WUBlastX LTR_Gypsy 244795 245085 107 + . . scaffold1850 WUBlastX LTR_Gypsy 245049 245132 48 + . . scaffold1850 WUBlastX LTR_Gypsy 245102 245368 107 + . . scaffold1850 WUBlastX LTR_Gypsy 245150 245362 160 + . . scaffold1850 WUBlastX LTR_Gypsy 245720 245812 21 + . . scaffold1851 GLEAN promoter 4345 5344 0.649422 + . ID=CGI_10005102; scaffold1851 GLEAN mRNA 5345 5815 0.649422 + . ID=CGI_10005102; scaffold1851 WUBlastX LINE_L2 9315 9545 108 - . . scaffold1851 WUBlastX LINE_CR1-L2 9560 9766 60 + . . scaffold1851 TRF Tandem_Repeat 23162 23228 64 + . . scaffold1851 TRF Tandem_Repeat 24478 25208 595 + . . scaffold1851 TRF Tandem_Repeat 24497 25247 576 + . . scaffold1851 TRF Tandem_Repeat 25456 25511 94 + . . scaffold1851 TRF Tandem_Repeat 32150 32204 110 + . . scaffold1851 TRF Tandem_Repeat 32933 34264 1689 + . . scaffold1851 WUBlastX LTR_Gypsy-Troyk 34852 37098 1934 + . . scaffold1851 TRF Tandem_Repeat 58710 58738 58 + . . scaffold1851 TRF Tandem_Repeat 63465 63500 72 + . . scaffold1851 GLEAN promoter 69719 70718 0.759751 + . ID=CGI_10005103; scaffold1851 GLEAN mRNA 70719 72389 0.759751 + . ID=CGI_10005103; scaffold1851 GLEAN mRNA 98297 105350 0.387171 - . ID=CGI_10005104; scaffold1851 TRF Tandem_Repeat 101673 101872 319 + . . scaffold1851 WUBlastX LTR_Gypsy 102905 104500 910 + . . scaffold1851 WUBlastX LTR_Gypsy 104012 104611 188 + . . scaffold1851 WUBlastX LTR_Gypsy 104174 104689 80 + . . scaffold1851 GLEAN promoter 105351 106350 0.387171 - . ID=CGI_10005104; scaffold1851 WUBlastX LTR_Copia 106284 106352 20 + . . scaffold1851 WUBlastX LTR_Gypsy 106526 107140 233 + . . scaffold1851 WUBlastX LTR_Gypsy 106556 107044 490 + . . scaffold1851 WUBlastX LTR_Gypsy 107016 107237 154 + . . scaffold1851 WUBlastX LTR_Gypsy 107254 107580 247 + . . scaffold1851 WUBlastX LTR_Gypsy 107254 107496 294 + . . scaffold1851 WUBlastX LTR_Gypsy 107565 108578 327 + . . scaffold1851 WUBlastX LTR_Gypsy 107748 108893 851 + . . scaffold1851 GLEAN promoter 110223 111222 0.443836 + . ID=CGI_10005105; scaffold1851 GLEAN mRNA 111223 118005 0.443836 + . ID=CGI_10005105; scaffold1852 GLEAN mRNA 297 23940 1 - . ID=CGI_10003572; scaffold1852 GLEAN promoter 17688 18687 1 + . ID=CGI_10003573; scaffold1852 GLEAN mRNA 18688 23142 1 + . ID=CGI_10003573; scaffold1852 GLEAN promoter 23941 24940 1 - . ID=CGI_10003572; scaffold1852 GLEAN mRNA 24273 33277 0.772205 - . ID=CGI_10003574; scaffold1852 GLEAN promoter 33278 34277 0.772205 - . ID=CGI_10003574; scaffold1852 GLEAN promoter 37206 38205 0.998816 + . ID=CGI_10003575; scaffold1852 GLEAN mRNA 38206 38805 0.998816 + . ID=CGI_10003575; scaffold1852 GLEAN promoter 45666 46665 0.990741 + . ID=CGI_10003576; scaffold1852 GLEAN mRNA 46666 50589 0.990741 + . ID=CGI_10003576; scaffold1852 GLEAN promoter 62745 63744 0.381492 + . ID=CGI_10003577; scaffold1852 GLEAN mRNA 63745 64200 0.381492 + . ID=CGI_10003577; scaffold1853 GLEAN mRNA 77725 78870 1 - . ID=CGI_10003977; scaffold1853 GLEAN promoter 78871 79870 1 - . ID=CGI_10003977; scaffold1853 GLEAN mRNA 87138 87482 0.999375 - . ID=CGI_10003978; scaffold1853 GLEAN promoter 87483 87534 0.999375 - . ID=CGI_10003978; scaffold1854 WUBlastX LINE_L1 2470 2565 21 + . . scaffold1854 WUBlastX LINE_L2 2714 3856 561 + . . scaffold1854 WUBlastX LINE_L2 3029 4090 281 + . . scaffold1854 WUBlastX LINE_L2 3859 4245 208 + . . scaffold1854 WUBlastX LINE_L2 3886 4533 202 + . . scaffold1854 WUBlastX LINE_RTE-X 4767 4928 49 + . . scaffold1854 WUBlastX LINE_RTE-X 4779 5072 37 + . . scaffold1854 WUBlastX LINE_RTE-X 4803 5018 68 + . . scaffold1854 GLEAN mRNA 10780 21821 0.727692 - . ID=CGI_10004409; scaffold1854 WUBlastX LTR_Ngaro 20882 21055 109 - . . scaffold1854 WUBlastX LTR_Ngaro 21096 21473 140 - . . scaffold1854 WUBlastX LTR_Ngaro 21132 21665 127 - . . scaffold1854 GLEAN promoter 21822 22821 0.727692 - . ID=CGI_10004409; scaffold1854 TRF Tandem_Repeat 22522 22555 59 + . . scaffold1854 TRF Tandem_Repeat 26001 26151 97 + . . scaffold1854 GLEAN mRNA 27227 27391 0.5 - . ID=CGI_10004410; scaffold1854 GLEAN promoter 27392 28391 0.5 - . ID=CGI_10004410; scaffold1854 WUBlastX LINE_L1-Tx1 28767 29675 25 + . . scaffold1854 WUBlastX LINE_L1-Tx1 29232 29408 39 + . . scaffold1854 TRF Tandem_Repeat 30491 30521 62 + . . scaffold1854 TRF Tandem_Repeat 50034 50064 53 + . . scaffold1854 TRF Tandem_Repeat 51867 51903 74 + . . scaffold1854 TRF Tandem_Repeat 54473 54505 57 + . . scaffold1854 GLEAN mRNA 56751 57383 1 - . ID=CGI_10004411; scaffold1854 GLEAN promoter 57384 58383 1 - . ID=CGI_10004411; scaffold1854 TRF Tandem_Repeat 60567 60629 126 + . . scaffold1854 GLEAN mRNA 72037 72390 0.999372 - . ID=CGI_10004412; scaffold1854 GLEAN promoter 72391 73390 0.999372 - . ID=CGI_10004412; scaffold1854 TRF Tandem_Repeat 73221 73279 111 + . . scaffold1854 TRF Tandem_Repeat 81507 81877 505 + . . scaffold1854 TRF Tandem_Repeat 92751 92808 116 + . . scaffold1854 TRF Tandem_Repeat 96017 96071 110 + . . scaffold1854 WUBlastX LTR_Copia 97345 97548 22 - . . scaffold1854 WUBlastX LTR_Copia 97638 98849 97 - . . scaffold1854 WUBlastX LTR_Gypsy 97860 99335 547 - . . scaffold1854 WUBlastX LTR_Gypsy-Cigr 98022 99272 756 - . . scaffold1854 WUBlastX LTR_Gypsy 99343 99438 64 - . . scaffold1854 WUBlastX LTR_Gypsy-Cigr 99358 99501 141 - . . scaffold1855 GLEAN mRNA 6186 9532 0.999972 - . ID=CGI_10008863; scaffold1855 TRF Tandem_Repeat 9397 9444 87 + . . scaffold1855 TRF Tandem_Repeat 9444 9468 50 + . . scaffold1855 GLEAN promoter 9533 10532 0.999972 - . ID=CGI_10008863; scaffold1855 TRF Tandem_Repeat 32633 33390 1281 + . . scaffold1855 TRF Tandem_Repeat 33555 33597 61 + . . scaffold1855 GLEAN mRNA 35284 38697 0.999415 - . ID=CGI_10008864; scaffold1855 GLEAN promoter 38040 39039 0.999675 + . ID=CGI_10008865; scaffold1855 GLEAN promoter 38698 39697 0.999415 - . ID=CGI_10008864; scaffold1855 GLEAN mRNA 39040 50555 0.999675 + . ID=CGI_10008865; scaffold1855 GLEAN mRNA 54557 61872 0.999949 - . ID=CGI_10008866; scaffold1855 GLEAN promoter 59885 60884 0.863503 + . ID=CGI_10008867; scaffold1855 GLEAN mRNA 60885 73360 0.863503 + . ID=CGI_10008867; scaffold1855 GLEAN promoter 61873 62872 0.999949 - . ID=CGI_10008866; scaffold1855 TRF Tandem_Repeat 65283 65324 75 + . . scaffold1855 WUBlastX LINE_L1 73369 73434 20 + . . scaffold1855 WUBlastX LINE_L1 74020 74781 160 + . . scaffold1855 WUBlastX LINE_L1-Tx1 74233 74781 286 + . . scaffold1855 GLEAN mRNA 82885 126508 0.807623 - . ID=CGI_10008868; scaffold1855 TRF Tandem_Repeat 93902 93947 83 + . . scaffold1855 TRF Tandem_Repeat 94356 94382 54 + . . scaffold1855 TRF Tandem_Repeat 98070 98116 51 + . . scaffold1855 TRF Tandem_Repeat 99084 99144 122 + . . scaffold1855 TRF Tandem_Repeat 100160 100197 76 + . . scaffold1855 TRF Tandem_Repeat 103685 103735 93 + . . scaffold1855 GLEAN promoter 108033 109032 0.777693 + . ID=CGI_10008869; scaffold1855 GLEAN mRNA 109033 121567 0.777693 + . ID=CGI_10008869; scaffold1855 TRF Tandem_Repeat 109893 109959 134 + . . scaffold1855 GLEAN promoter 126509 127508 0.807623 - . ID=CGI_10008868; scaffold1855 GLEAN mRNA 127608 144309 0.514933 - . ID=CGI_10008870; scaffold1855 WUBlastX LTR_Gypsy 137665 137898 26 - . . scaffold1855 TRF Tandem_Repeat 139784 139813 51 + . . scaffold1855 GLEAN promoter 144310 145309 0.514933 - . ID=CGI_10008870; scaffold1855 GLEAN promoter 149381 150380 1 + . ID=CGI_10008871; scaffold1855 GLEAN mRNA 150381 156358 1 + . ID=CGI_10008871; scaffold1855 TRF Tandem_Repeat 160496 160544 50 + . . scaffold1855 TRF Tandem_Repeat 160517 160603 87 + . . scaffold1855 TRF Tandem_Repeat 160533 160618 67 + . . scaffold1855 GLEAN promoter 160804 161803 0.771356 + . ID=CGI_10008872; scaffold1855 GLEAN mRNA 161804 163525 0.771356 + . ID=CGI_10008872; scaffold1855 TRF Tandem_Repeat 164850 164888 51 + . . scaffold1855 GLEAN promoter 165072 166071 0.335051 + . ID=CGI_10008873; scaffold1855 GLEAN mRNA 166072 174895 0.335051 + . ID=CGI_10008873; scaffold1855 GLEAN promoter 176348 177347 0.999984 + . ID=CGI_10008874; scaffold1855 GLEAN mRNA 177348 179045 0.999984 + . ID=CGI_10008874; scaffold1855 TRF Tandem_Repeat 179340 179367 56 + . . scaffold1855 GLEAN mRNA 182724 183959 0.986676 - . ID=CGI_10008875; scaffold1855 GLEAN promoter 183960 184959 0.986676 - . ID=CGI_10008875; scaffold1855 GLEAN mRNA 188156 207855 0.999324 - . ID=CGI_10008876; scaffold1855 TRF Tandem_Repeat 189873 189913 82 + . . scaffold1855 TRF Tandem_Repeat 190345 190385 82 + . . scaffold1855 WUBlastX LINE_RTE-X 201065 201490 181 + . . scaffold1855 WUBlastX LINE_RTE-X 201339 201620 47 + . . scaffold1855 TRF Tandem_Repeat 201914 202098 264 + . . scaffold1855 TRF Tandem_Repeat 202903 203647 1151 + . . scaffold1855 TRF Tandem_Repeat 203821 203868 55 + . . scaffold1855 WUBlastX LINE_RTE-X 205603 205668 21 - . . scaffold1855 WUBlastX LINE_RTE-X 205682 206389 158 - . . scaffold1855 GLEAN promoter 207856 208855 0.999324 - . ID=CGI_10008876; scaffold1855 GLEAN promoter 211042 212041 1 + . ID=CGI_10008877; scaffold1855 GLEAN mRNA 212042 216030 1 + . ID=CGI_10008877; scaffold1855 TRF Tandem_Repeat 216714 216759 92 + . . scaffold1856 GLEAN promoter 1 210 0.991888 + . ID=CGI_10007316; scaffold1856 GLEAN mRNA 211 37201 0.991888 + . ID=CGI_10007316; scaffold1856 TRF Tandem_Repeat 8664 8720 107 + . . scaffold1856 TRF Tandem_Repeat 25600 25626 54 + . . scaffold1856 TRF Tandem_Repeat 26924 26960 65 + . . scaffold1856 TRF Tandem_Repeat 28489 28515 54 + . . scaffold1856 TRF Tandem_Repeat 47173 47202 51 + . . scaffold1856 TRF Tandem_Repeat 51037 51292 314 + . . scaffold1856 TRF Tandem_Repeat 51037 51210 258 + . . scaffold1856 GLEAN promoter 52849 53848 0.497882 + . ID=CGI_10007317; scaffold1856 GLEAN mRNA 53849 71464 0.497882 + . ID=CGI_10007317; scaffold1856 TRF Tandem_Repeat 61471 61665 363 + . . scaffold1856 TRF Tandem_Repeat 70065 70226 297 + . . scaffold1856 GLEAN mRNA 75708 77722 0.503436 - . ID=CGI_10007318; scaffold1856 TRF Tandem_Repeat 77295 77396 127 + . . scaffold1856 GLEAN promoter 77723 78722 0.503436 - . ID=CGI_10007318; scaffold1856 WUBlastX LTR_Gypsy 79085 79798 79 - . . scaffold1856 TRF Tandem_Repeat 80514 80629 139 + . . scaffold1856 GLEAN promoter 81365 82364 0.992164 + . ID=CGI_10007320; scaffold1856 GLEAN mRNA 82365 87572 0.992164 + . ID=CGI_10007320; scaffold1856 TRF Tandem_Repeat 84847 84897 102 + . . scaffold1856 GLEAN mRNA 91579 98271 0.76904 - . ID=CGI_10007321; scaffold1856 TRF Tandem_Repeat 91738 91764 54 + . . scaffold1856 GLEAN promoter 98272 99271 0.76904 - . ID=CGI_10007321; scaffold1856 GLEAN mRNA 99084 106113 0.998256 - . ID=CGI_10007322; scaffold1856 TRF Tandem_Repeat 100651 100687 65 + . . scaffold1856 TRF Tandem_Repeat 101614 101692 54 + . . scaffold1856 TRF Tandem_Repeat 102524 102594 70 + . . scaffold1856 TRF Tandem_Repeat 105804 105835 64 + . . scaffold1856 GLEAN promoter 106114 107113 0.998256 - . ID=CGI_10007322; scaffold1856 GLEAN mRNA 111070 116832 0.992668 - . ID=CGI_10007323; scaffold1856 TRF Tandem_Repeat 116113 116198 165 + . . scaffold1856 GLEAN promoter 116833 117832 0.992668 - . ID=CGI_10007323; scaffold1856 TRF Tandem_Repeat 118117 118198 164 + . . scaffold1856 TRF Tandem_Repeat 120629 120665 74 + . . scaffold1856 TRF Tandem_Repeat 128495 128530 72 + . . scaffold1856 TRF Tandem_Repeat 130341 130383 86 + . . scaffold1856 TRF Tandem_Repeat 133683 133759 138 + . . scaffold1856 GLEAN mRNA 138443 140155 0.999547 - . ID=CGI_10007324; scaffold1856 TRF Tandem_Repeat 138945 139197 314 + . . scaffold1856 GLEAN promoter 140156 141155 0.999547 - . ID=CGI_10007324; scaffold1856 GLEAN mRNA 140337 142572 0.999547 - . ID=CGI_10007325; scaffold1856 GLEAN promoter 142573 143572 0.999547 - . ID=CGI_10007325; scaffold1856 GLEAN mRNA 142703 154958 0.999993 - . ID=CGI_10007326; scaffold1856 TRF Tandem_Repeat 152855 152896 84 + . . scaffold1856 GLEAN promoter 154959 155958 0.999993 - . ID=CGI_10007326; scaffold1856 GLEAN mRNA 155107 158621 1 - . ID=CGI_10007327; scaffold1856 GLEAN promoter 157721 158720 1 + . ID=CGI_10007328; scaffold1856 GLEAN promoter 158622 159621 1 - . ID=CGI_10007327; scaffold1856 GLEAN mRNA 158721 161344 1 + . ID=CGI_10007328; scaffold1856 TRF Tandem_Repeat 159611 160566 1370 + . . scaffold1856 TRF Tandem_Repeat 160590 160652 54 + . . scaffold1856 TRF Tandem_Repeat 160590 160643 63 + . . scaffold1856 TRF Tandem_Repeat 160593 160652 66 + . . scaffold1856 GLEAN mRNA 161590 176100 0.999991 - . ID=CGI_10007329; scaffold1856 TRF Tandem_Repeat 169496 169527 50 + . . scaffold1856 TRF Tandem_Repeat 172807 172859 106 + . . scaffold1856 TRF Tandem_Repeat 172860 172886 54 + . . scaffold1856 GLEAN promoter 176101 177100 0.999991 - . ID=CGI_10007329; scaffold1857 WUBlastX DNA_Crypton 977 1378 82 - . . scaffold1857 WUBlastX DNA_Crypton 1082 1477 58 - . . scaffold1857 WUBlastX DNA_Crypton 2008 2256 36 - . . scaffold1857 WUBlastX DNA_Sola 3527 3628 22 - . . scaffold1857 WUBlastX DNA_Sola 3675 4025 122 - . . scaffold1857 WUBlastX DNA_Sola 3684 3974 122 - . . scaffold1857 WUBlastX DNA_Sola 3988 4128 75 - . . scaffold1857 TRF Tandem_Repeat 4699 4756 116 + . . scaffold1857 WUBlastX DNA_Harbinger 5079 5474 65 + . . scaffold1857 WUBlastX DNA_Harbinger 5175 5396 102 + . . scaffold1857 GLEAN promoter 23494 24493 0.908338 + . ID=CGI_10020193; scaffold1857 GLEAN mRNA 24494 24874 0.908338 + . ID=CGI_10020193; scaffold1857 WUBlastX LINE_L1 28012 28338 49 + . . scaffold1857 WUBlastX LINE_L1-Tx1 28087 28575 111 + . . scaffold1857 WUBlastX LINE_L1-Tx1 28090 28707 26 + . . scaffold1857 GLEAN promoter 29578 30577 0.970402 + . ID=CGI_10020194; scaffold1857 GLEAN mRNA 30578 37776 0.970402 + . ID=CGI_10020194; scaffold1857 TRF Tandem_Repeat 33453 33540 135 + . . scaffold1857 WUBlastX LTR_Ngaro 46258 46494 29 + . . scaffold1857 WUBlastX LTR_Ngaro 46501 47670 127 + . . scaffold1857 WUBlastX LTR_Ngaro 46729 47721 141 + . . scaffold1857 WUBlastX LTR_Ngaro 47773 47919 47 + . . scaffold1857 WUBlastX LTR_Ngaro 47907 48227 22 + . . scaffold1857 WUBlastX LTR_Ngaro 48087 48242 58 + . . scaffold1857 TRF Tandem_Repeat 57255 57343 124 + . . scaffold1857 WUBlastX LINE_L1 60417 60998 50 + . . scaffold1857 WUBlastX LINE_CR1-L2 60570 61073 181 + . . scaffold1857 WUBlastX LINE_L1 60606 61166 86 + . . scaffold1857 TRF Tandem_Repeat 63008 63046 69 + . . scaffold1857 WUBlastX LTR_DIRS 66457 67107 117 + . . scaffold1857 WUBlastX LTR_DIRS 67070 67489 69 + . . scaffold1857 WUBlastX LTR_DIRS 67476 69092 696 + . . scaffold1857 TRF Tandem_Repeat 69260 69708 603 + . . scaffold1857 WUBlastX LTR_DIRS 69906 70745 306 + . . scaffold1857 WUBlastX LTR_DIRS? 70741 70872 116 + . . scaffold1857 WUBlastX LTR_Gypsy 83713 84864 147 - . . scaffold1857 WUBlastX LTR_Gypsy 83791 84699 223 - . . scaffold1857 TRF Tandem_Repeat 86031 86155 69 + . . scaffold1857 TRF Tandem_Repeat 86094 86178 59 + . . scaffold1857 TRF Tandem_Repeat 86642 87326 1002 + . . scaffold1857 TRF Tandem_Repeat 89799 89864 62 + . . scaffold1857 TRF Tandem_Repeat 98748 98777 60 + . . scaffold1857 TRF Tandem_Repeat 101195 101228 68 + . . scaffold1857 GLEAN promoter 106105 107104 0.999999 + . ID=CGI_10020195; scaffold1857 GLEAN mRNA 107105 108238 0.999999 + . ID=CGI_10020195; scaffold1857 GLEAN promoter 116316 117315 0.997645 + . ID=CGI_10020196; scaffold1857 GLEAN mRNA 117316 120869 0.997645 + . ID=CGI_10020196; scaffold1857 WUBlastX DNA_Harbinger 137118 137426 111 + . . scaffold1857 WUBlastX DNA_Harbinger 137494 137877 82 - . . scaffold1857 WUBlastX DNA_Harbinger 137551 137862 111 - . . scaffold1857 TRF Tandem_Repeat 140181 140211 53 + . . scaffold1857 GLEAN mRNA 143340 144230 0.904865 - . ID=CGI_10020197; scaffold1857 GLEAN promoter 144231 145230 0.904865 - . ID=CGI_10020197; scaffold1857 TRF Tandem_Repeat 146132 146162 62 + . . scaffold1857 WUBlastX LINE_RTE-BovB 160020 160166 26 + . . scaffold1857 WUBlastX LINE_RTE-BovB 160062 160166 39 + . . scaffold1857 WUBlastX LINE_RTE-BovB 160185 160451 126 + . . scaffold1857 WUBlastX LINE_RTE-BovB 160400 161257 257 + . . scaffold1857 WUBlastX LINE_RTE-BovB 161260 161565 217 + . . scaffold1857 WUBlastX LINE_RTE-BovB 161550 161648 33 + . . scaffold1857 WUBlastX LINE_RTE-BovB 161586 161792 115 + . . scaffold1857 WUBlastX LINE_RTE-BovB 161780 161872 32 + . . scaffold1857 WUBlastX LINE_RTE-BovB 161857 162012 60 + . . scaffold1857 GLEAN mRNA 168246 181457 0.904403 - . ID=CGI_10020198; scaffold1857 TRF Tandem_Repeat 170575 170622 96 + . . scaffold1857 TRF Tandem_Repeat 174555 174602 60 + . . scaffold1857 GLEAN promoter 181458 182457 0.904403 - . ID=CGI_10020198; scaffold1857 GLEAN mRNA 182894 193522 0.999588 - . ID=CGI_10020199; scaffold1857 TRF Tandem_Repeat 186195 186226 55 + . . scaffold1857 TRF Tandem_Repeat 186623 186918 319 + . . scaffold1857 TRF Tandem_Repeat 188043 188189 165 + . . scaffold1857 TRF Tandem_Repeat 192492 192546 110 + . . scaffold1857 TRF Tandem_Repeat 192762 192813 104 + . . scaffold1857 GLEAN promoter 193523 194522 0.999588 - . ID=CGI_10020199; scaffold1857 TRF Tandem_Repeat 198281 198332 95 + . . scaffold1857 GLEAN mRNA 212592 213815 0.531613 - . ID=CGI_10020200; scaffold1857 GLEAN promoter 213816 214815 0.531613 - . ID=CGI_10020200; scaffold1857 TRF Tandem_Repeat 218715 218768 99 + . . scaffold1857 TRF Tandem_Repeat 219974 220038 130 + . . scaffold1857 TRF Tandem_Repeat 220419 220469 77 + . . scaffold1857 TRF Tandem_Repeat 225553 225581 58 + . . scaffold1857 TRF Tandem_Repeat 262109 262260 130 + . . scaffold1857 TRF Tandem_Repeat 262109 262296 216 + . . scaffold1857 TRF Tandem_Repeat 262295 262465 171 + . . scaffold1857 TRF Tandem_Repeat 265432 265487 94 + . . scaffold1857 TRF Tandem_Repeat 266462 266525 87 + . . scaffold1857 TRF Tandem_Repeat 271269 271395 254 + . . scaffold1857 TRF Tandem_Repeat 296662 296742 56 + . . scaffold1857 TRF Tandem_Repeat 298231 298587 378 + . . scaffold1857 TRF Tandem_Repeat 299052 299173 81 + . . scaffold1857 GLEAN promoter 299561 300560 0.999811 + . ID=CGI_10020201; scaffold1857 GLEAN mRNA 300561 305948 0.999811 + . ID=CGI_10020201; scaffold1857 GLEAN mRNA 306049 355139 0.539829 - . ID=CGI_10020202; scaffold1857 TRF Tandem_Repeat 310502 310558 107 + . . scaffold1857 GLEAN promoter 313972 314971 0.512795 + . ID=CGI_10020203; scaffold1857 GLEAN mRNA 314972 315154 0.512795 + . ID=CGI_10020203; scaffold1857 GLEAN promoter 316279 317278 0.77748 + . ID=CGI_10020204; scaffold1857 GLEAN mRNA 317279 324586 0.77748 + . ID=CGI_10020204; scaffold1857 TRF Tandem_Repeat 340678 340741 101 + . . scaffold1857 GLEAN promoter 341456 342455 0.618186 + . ID=CGI_10020205; scaffold1857 GLEAN mRNA 342456 342674 0.618186 + . ID=CGI_10020205; scaffold1857 TRF Tandem_Repeat 344520 345161 852 + . . scaffold1857 TRF Tandem_Repeat 344520 345161 691 + . . scaffold1857 TRF Tandem_Repeat 350825 350990 305 + . . scaffold1857 GLEAN promoter 355140 356139 0.539829 - . ID=CGI_10020202; scaffold1857 TRF Tandem_Repeat 355694 355727 68 + . . scaffold1857 GLEAN promoter 356023 357022 0.999676 + . ID=CGI_10020206; scaffold1857 TRF Tandem_Repeat 356850 356887 76 + . . scaffold1857 GLEAN mRNA 357023 365976 0.999676 + . ID=CGI_10020206; scaffold1857 GLEAN promoter 365216 366215 1 + . ID=CGI_10020207; scaffold1857 GLEAN mRNA 366216 366906 1 + . ID=CGI_10020207; scaffold1857 GLEAN mRNA 371480 383250 1 - . ID=CGI_10020208; scaffold1857 GLEAN promoter 383251 384250 1 - . ID=CGI_10020208; scaffold1857 TRF Tandem_Repeat 389434 389944 738 + . . scaffold1857 TRF Tandem_Repeat 391908 391934 54 + . . scaffold1857 TRF Tandem_Repeat 393621 393752 119 + . . scaffold1857 TRF Tandem_Repeat 395746 395816 142 + . . scaffold1857 TRF Tandem_Repeat 404084 404122 78 + . . scaffold1857 WUBlastX LINE_L1 405424 405726 66 + . . scaffold1857 WUBlastX LINE_L2 407417 407473 20 + . . scaffold1857 WUBlastX LINE_RTE-X 407475 408044 96 + . . scaffold1857 WUBlastX LINE_RTE-X 408675 408917 133 + . . scaffold1857 WUBlastX LINE_RTE-X 408702 409379 99 + . . scaffold1857 WUBlastX LINE_RTE-X 409024 409527 45 + . . scaffold1857 WUBlastX LINE_RTE-X 409514 409906 58 + . . scaffold1857 WUBlastX LINE_RTE-X 409517 409804 110 + . . scaffold1857 WUBlastX LINE_RTE-X 409840 410112 25 + . . scaffold1857 WUBlastX LINE_RTE-X 409855 409974 47 + . . scaffold1857 WUBlastX LINE_RTE-X 410058 410189 25 + . . scaffold1857 TRF Tandem_Repeat 411614 411650 74 + . . scaffold1857 TRF Tandem_Repeat 411652 411708 96 + . . scaffold1857 WUBlastX DNA_TcMar-Tc1 411882 412154 56 + . . scaffold1857 WUBlastX DNA_TcMar-Tc1 412075 412956 259 + . . scaffold1857 WUBlastX DNA_TcMar-Tc1 412237 412956 306 + . . scaffold1857 TRF Tandem_Repeat 413053 413081 58 + . . scaffold1857 TRF Tandem_Repeat 415207 415255 98 + . . scaffold1857 TRF Tandem_Repeat 420317 420370 83 + . . scaffold1857 TRF Tandem_Repeat 424601 424664 83 + . . scaffold1857 GLEAN mRNA 425603 425824 0.59015 - . ID=CGI_10020209; scaffold1857 GLEAN promoter 425825 426824 0.59015 - . ID=CGI_10020209; scaffold1857 WUBlastX DNA_Harbinger 426388 426453 29 - . . scaffold1857 WUBlastX DNA_Harbinger 426403 426762 52 - . . scaffold1857 WUBlastX DNA_Harbinger 426505 427527 438 - . . scaffold1857 GLEAN promoter 435788 436787 0.375837 + . ID=CGI_10020210; scaffold1857 GLEAN mRNA 436788 451915 0.375837 + . ID=CGI_10020210; scaffold1857 WUBlastX LTR_Gypsy-Cigr 437094 437669 195 + . . scaffold1857 TRF Tandem_Repeat 446207 446953 870 + . . scaffold1857 WUBlastX LINE_L1 455647 456276 62 + . . scaffold1857 WUBlastX LINE_L1 455743 456276 184 + . . scaffold1857 WUBlastX LINE_L1-Tx1 455836 456483 166 + . . scaffold1857 WUBlastX LINE_L1-Tx1 455836 456270 193 + . . scaffold1857 WUBlastX LINE_L1-Tx1 455908 456276 197 + . . scaffold1857 TRF Tandem_Repeat 462177 463266 1281 + . . scaffold1857 GLEAN promoter 467122 468121 0.999902 + . ID=CGI_10020211; scaffold1857 GLEAN mRNA 468122 469066 0.999902 + . ID=CGI_10020211; scaffold1857 GLEAN mRNA 474565 486770 0.999351 - . ID=CGI_10020212; scaffold1857 GLEAN promoter 486771 487770 0.999351 - . ID=CGI_10020212; scaffold1857 TRF Tandem_Repeat 490560 491596 1477 + . . scaffold1857 GLEAN mRNA 492359 500197 0.99994 - . ID=CGI_10020213; scaffold1857 TRF Tandem_Repeat 492984 493019 72 + . . scaffold1857 GLEAN promoter 500198 501197 0.99994 - . ID=CGI_10020213; scaffold1857 GLEAN mRNA 501765 516797 0.984363 - . ID=CGI_10020214; scaffold1857 TRF Tandem_Repeat 514096 514150 56 + . . scaffold1857 TRF Tandem_Repeat 515104 515161 116 + . . scaffold1857 GLEAN promoter 516724 517723 1 + . ID=CGI_10020215; scaffold1857 GLEAN promoter 516798 517797 0.984363 - . ID=CGI_10020214; scaffold1857 GLEAN mRNA 517724 519256 1 + . ID=CGI_10020215; scaffold1857 GLEAN promoter 523524 524523 1 + . ID=CGI_10020216; scaffold1857 GLEAN mRNA 524524 525476 1 + . ID=CGI_10020216; scaffold1857 GLEAN promoter 526712 527711 1 + . ID=CGI_10020217; scaffold1857 GLEAN mRNA 527712 529152 1 + . ID=CGI_10020217; scaffold1857 GLEAN mRNA 530306 546291 0.951796 - . ID=CGI_10020218; scaffold1857 TRF Tandem_Repeat 530994 531052 118 + . . scaffold1857 TRF Tandem_Repeat 539122 539302 150 + . . scaffold1857 GLEAN promoter 546292 547291 0.951796 - . ID=CGI_10020218; scaffold1857 GLEAN mRNA 550946 560953 0.619963 - . ID=CGI_10020219; scaffold1857 GLEAN promoter 560954 561953 0.619963 - . ID=CGI_10020219; scaffold1857 TRF Tandem_Repeat 565310 565356 94 + . . scaffold1857 GLEAN mRNA 567589 575565 1 - . ID=CGI_10020220; scaffold1857 TRF Tandem_Repeat 569590 569692 172 + . . scaffold1857 TRF Tandem_Repeat 572182 572260 63 + . . scaffold1857 TRF Tandem_Repeat 572190 572255 53 + . . scaffold1857 GLEAN promoter 575566 576565 1 - . ID=CGI_10020220; scaffold1857 GLEAN mRNA 575982 581970 0.916029 - . ID=CGI_10020221; scaffold1857 TRF Tandem_Repeat 576673 576784 125 + . . scaffold1857 TRF Tandem_Repeat 576673 576784 145 + . . scaffold1857 GLEAN promoter 581971 582970 0.916029 - . ID=CGI_10020221; scaffold1857 GLEAN mRNA 583742 584287 0.915732 - . ID=CGI_10020222; scaffold1857 GLEAN promoter 584288 585287 0.915732 - . ID=CGI_10020222; scaffold1857 TRF Tandem_Repeat 594139 594207 113 + . . scaffold1857 GLEAN promoter 596603 597602 1 + . ID=CGI_10020223; scaffold1857 WUBlastX LINE_CR1 596769 597530 154 + . . scaffold1857 GLEAN mRNA 597603 598121 1 + . ID=CGI_10020223; scaffold1857 WUBlastX LINE_L1-Tx1 598274 599938 499 + . . scaffold1857 WUBlastX LINE_L1 599910 600890 274 + . . scaffold1857 WUBlastX LINE_L1-Tx1 599958 600752 322 + . . scaffold1857 WUBlastX LINE_L1-Tx1 600773 601087 66 + . . scaffold1857 WUBlastX LINE_L1-Tx1 601099 601665 22 + . . scaffold1857 WUBlastX LINE_DRE 601543 601641 32 + . . scaffold1857 GLEAN mRNA 603414 610851 0.585166 - . ID=CGI_10020224; scaffold1857 GLEAN promoter 610852 611851 0.585166 - . ID=CGI_10020224; scaffold1857 TRF Tandem_Repeat 612590 612618 58 + . . scaffold1858 GLEAN mRNA 1684 49149 0.999375 - . ID=CGI_10010439; scaffold1858 TRF Tandem_Repeat 4762 4827 89 + . . scaffold1858 GLEAN promoter 34421 35420 1 + . ID=CGI_10010440; scaffold1858 TRF Tandem_Repeat 34994 35079 154 + . . scaffold1858 GLEAN mRNA 35421 37173 1 + . ID=CGI_10010440; scaffold1858 GLEAN promoter 37554 38553 0.618241 + . ID=CGI_10010441; scaffold1858 GLEAN mRNA 38554 38712 0.618241 + . ID=CGI_10010441; scaffold1858 TRF Tandem_Repeat 41299 41443 168 + . . scaffold1858 GLEAN promoter 49150 50149 0.999375 - . ID=CGI_10010439; scaffold1858 GLEAN mRNA 49788 62820 0.8139 - . ID=CGI_10010442; scaffold1858 GLEAN promoter 62821 63820 0.8139 - . ID=CGI_10010442; scaffold1858 TRF Tandem_Repeat 63984 64050 134 + . . scaffold1858 GLEAN promoter 67859 68858 0.839673 + . ID=CGI_10010443; scaffold1858 GLEAN mRNA 68859 77379 0.839673 + . ID=CGI_10010443; scaffold1858 TRF Tandem_Repeat 69200 69249 100 + . . scaffold1858 TRF Tandem_Repeat 70705 70757 106 + . . scaffold1858 WUBlastX LINE_CR1-L2 72140 72586 44 + . . scaffold1858 WUBlastX LINE_CR1-L2 72248 72565 86 + . . scaffold1858 TRF Tandem_Repeat 76374 76399 52 + . . scaffold1858 GLEAN mRNA 79089 81849 0.999508 - . ID=CGI_10010444; scaffold1858 GLEAN promoter 80895 81894 0.775596 + . ID=CGI_10010445; scaffold1858 GLEAN promoter 81850 82849 0.999508 - . ID=CGI_10010444; scaffold1858 GLEAN mRNA 81895 83643 0.775596 + . ID=CGI_10010445; scaffold1858 GLEAN mRNA 89030 106039 0.999249 - . ID=CGI_10010446; scaffold1858 WUBlastX RC_Helitron 89153 89269 21 - . . scaffold1858 TRF Tandem_Repeat 100953 101911 1428 + . . scaffold1858 TRF Tandem_Repeat 101942 101989 60 + . . scaffold1858 GLEAN promoter 106040 107039 0.999249 - . ID=CGI_10010446; scaffold1858 WUBlastX LINE_RTE-X 107181 107336 27 - . . scaffold1858 WUBlastX LINE_RTE-X 108121 109248 219 - . . scaffold1858 WUBlastX LINE_RTE-X 108946 109362 64 - . . scaffold1858 WUBlastX LINE_L1-Tx1 112983 113198 54 + . . scaffold1858 WUBlastX LINE_L1 113058 113264 53 + . . scaffold1858 GLEAN mRNA 114362 126826 0.999351 - . ID=CGI_10010447; scaffold1858 WUBlastX LINE_L1-Tx1 120862 121695 123 - . . scaffold1858 WUBlastX LINE_L1-Tx1 121700 121972 86 - . . scaffold1858 WUBlastX LINE_L1-Tx1 121917 122141 86 - . . scaffold1858 WUBlastX LINE_L1 121944 122204 77 - . . scaffold1858 WUBlastX LINE_L1-Tx1 121944 122102 111 - . . scaffold1858 WUBlastX LINE_L1 121974 122357 32 - . . scaffold1858 GLEAN promoter 126827 127826 0.999351 - . ID=CGI_10010447; scaffold1858 GLEAN promoter 134382 135381 0.50244 + . ID=CGI_10010448; scaffold1858 GLEAN mRNA 135382 138680 0.50244 + . ID=CGI_10010448; scaffold1858 GLEAN promoter 140318 141317 0.983696 + . ID=CGI_10010449; scaffold1858 GLEAN mRNA 141318 142233 0.983696 + . ID=CGI_10010449; scaffold1858 TRF Tandem_Repeat 149557 149610 108 + . . scaffold1858 TRF Tandem_Repeat 153935 153971 74 + . . scaffold1858 TRF Tandem_Repeat 168400 168439 80 + . . scaffold1858 TRF Tandem_Repeat 168439 168472 68 + . . scaffold1858 WUBlastX DNA_TcMar-Tc1 169442 169582 22 + . . scaffold1858 WUBlastX DNA_TcMar-Tc1 169469 169582 23 + . . scaffold1858 WUBlastX DNA_TcMar-Tc1 169581 170027 182 + . . scaffold1858 WUBlastX DNA_TcMar-Tc1 170032 170205 77 + . . scaffold1858 WUBlastX DNA_TcMar-Marin 170199 170240 20 + . . scaffold1858 GLEAN mRNA 171848 177720 0.614525 - . ID=CGI_10010450; scaffold1858 GLEAN promoter 177721 178720 0.614525 - . ID=CGI_10010450; scaffold1858 TRF Tandem_Repeat 182613 183158 842 + . . scaffold1858 TRF Tandem_Repeat 182613 183158 827 + . . scaffold1858 TRF Tandem_Repeat 182613 183158 836 + . . scaffold1858 GLEAN mRNA 183137 186793 0.999676 - . ID=CGI_10010451; scaffold1858 GLEAN promoter 186794 187793 0.999676 - . ID=CGI_10010451; scaffold1858 TRF Tandem_Repeat 190085 190132 87 + . . scaffold1858 TRF Tandem_Repeat 190546 190618 146 + . . scaffold1858 TRF Tandem_Repeat 190785 190842 107 + . . scaffold1858 TRF Tandem_Repeat 191256 191298 86 + . . scaffold1858 GLEAN promoter 197466 198465 0.999999 + . ID=CGI_10010452; scaffold1858 TRF Tandem_Repeat 197567 197608 84 + . . scaffold1858 TRF Tandem_Repeat 197749 197796 96 + . . scaffold1858 GLEAN mRNA 198466 205379 0.999999 + . ID=CGI_10010452; scaffold1858 GLEAN promoter 205233 206232 0.759183 + . ID=CGI_10010453; scaffold1858 TRF Tandem_Repeat 205405 205446 84 + . . scaffold1858 TRF Tandem_Repeat 206151 206183 66 + . . scaffold1858 GLEAN mRNA 206233 238571 0.759183 + . ID=CGI_10010453; scaffold1858 TRF Tandem_Repeat 229012 229065 67 + . . scaffold1858 TRF Tandem_Repeat 229017 229062 67 + . . scaffold1858 TRF Tandem_Repeat 229232 230245 1580 + . . scaffold1858 TRF Tandem_Repeat 235271 235307 65 + . . scaffold1858 GLEAN promoter 238459 239458 0.910687 + . ID=CGI_10010454; scaffold1858 GLEAN mRNA 239459 247061 0.910687 + . ID=CGI_10010454; scaffold1858 GLEAN promoter 246301 247300 0.999999 + . ID=CGI_10010455; scaffold1858 GLEAN mRNA 247301 251940 0.999999 + . ID=CGI_10010455; scaffold1858 TRF Tandem_Repeat 251581 251618 76 + . . scaffold1858 GLEAN promoter 252674 253673 1 + . ID=CGI_10010456; scaffold1858 GLEAN mRNA 253674 254993 1 + . ID=CGI_10010456; scaffold1858 WUBlastX LINE_L1-Tx1 258280 258834 50 + . . scaffold1858 WUBlastX LINE_L1-Tx1 258319 258780 120 + . . scaffold1858 WUBlastX LINE_L1-Tx1 258923 259096 33 + . . scaffold1858 WUBlastX LINE_L1-Tx1 258980 259096 56 + . . scaffold1858 WUBlastX LINE_L1-Tx1 258986 259156 35 + . . scaffold1858 WUBlastX LINE_L1-Tx1 258995 259117 41 + . . scaffold1858 WUBlastX LINE_L1-Tx1 260384 260689 53 + . . scaffold1858 WUBlastX LINE_L1-Tx1 260477 260701 77 + . . scaffold1858 WUBlastX LINE_L1 260537 260707 79 + . . scaffold1858 WUBlastX LINE_L1-Tx1 260644 261402 438 + . . scaffold1858 WUBlastX LINE_L2 262407 262463 24 + . . scaffold1859 GLEAN promoter 1 649 0.999623 + . ID=CGI_10007224; scaffold1859 GLEAN mRNA 650 27981 0.999623 + . ID=CGI_10007224; scaffold1859 TRF Tandem_Repeat 3921 3963 86 + . . scaffold1859 TRF Tandem_Repeat 7722 8457 580 + . . scaffold1859 TRF Tandem_Repeat 11539 11872 463 + . . scaffold1859 TRF Tandem_Repeat 21359 21388 53 + . . scaffold1859 WUBlastX LINE_L2 44748 46163 771 + . . scaffold1859 WUBlastX LINE_RTE-RTE 46249 46320 22 - . . scaffold1859 WUBlastX LINE_RTE-X 46387 46947 160 - . . scaffold1859 WUBlastX LINE_CR1-L2 46990 47919 244 - . . scaffold1859 WUBlastX LINE_CR1-L2 47922 48197 161 - . . scaffold1859 WUBlastX LINE_CR1 48194 48394 87 - . . scaffold1859 WUBlastX LINE_CR1-L2 48197 48343 92 - . . scaffold1859 TRF Tandem_Repeat 50591 50629 78 + . . scaffold1859 GLEAN promoter 50718 51717 0.996976 + . ID=CGI_10007225; scaffold1859 GLEAN mRNA 51718 59401 0.996976 + . ID=CGI_10007225; scaffold1859 GLEAN mRNA 61017 77211 0.980385 - . ID=CGI_10007226; scaffold1859 TRF Tandem_Repeat 61600 62774 1942 + . . scaffold1859 TRF Tandem_Repeat 71241 71285 90 + . . scaffold1859 GLEAN promoter 74586 75585 0.863497 + . ID=CGI_10007227; scaffold1859 GLEAN mRNA 75586 89334 0.863497 + . ID=CGI_10007227; scaffold1859 WUBlastX DNA_TcMar-Tc1 75759 76019 64 + . . scaffold1859 GLEAN promoter 77212 78211 0.980385 - . ID=CGI_10007226; scaffold1859 TRF Tandem_Repeat 88513 88543 62 + . . scaffold1859 GLEAN mRNA 92275 105989 0.997972 - . ID=CGI_10007228; scaffold1859 GLEAN promoter 105990 106989 0.997972 - . ID=CGI_10007228; scaffold1859 GLEAN promoter 108144 109143 0.499812 + . ID=CGI_10007229; scaffold1859 GLEAN mRNA 109144 141701 0.499812 + . ID=CGI_10007229; scaffold1859 TRF Tandem_Repeat 117900 117938 69 + . . scaffold1859 GLEAN mRNA 130147 151079 0.840087 - . ID=CGI_10007230; scaffold1859 TRF Tandem_Repeat 148689 148727 78 + . . scaffold1859 GLEAN promoter 151080 152079 0.840087 - . ID=CGI_10007230; scaffold1859 GLEAN promoter 152643 153642 1 + . ID=CGI_10007231; scaffold1859 GLEAN mRNA 153643 154953 1 + . ID=CGI_10007231; scaffold1859 GLEAN mRNA 157501 171664 0.999497 - . ID=CGI_10007232; scaffold1859 TRF Tandem_Repeat 162661 162712 50 + . . scaffold1859 TRF Tandem_Repeat 162900 162958 55 + . . scaffold1859 GLEAN promoter 171665 172664 0.999497 - . ID=CGI_10007232; scaffold186 TRF Tandem_Repeat 79 128 75 + . . scaffold186 WUBlastX LTR_Gypsy 8942 9424 45 - . . scaffold186 WUBlastX LTR_Gypsy 9077 9424 70 - . . scaffold186 WUBlastX LTR_Gypsy 9137 9424 75 - . . scaffold186 WUBlastX LTR_Gypsy 9197 9424 136 - . . scaffold186 WUBlastX LTR_Gypsy-Cigr 9373 9696 93 - . . scaffold186 WUBlastX LTR_Gypsy 9475 9714 105 - . . scaffold186 WUBlastX LTR_Gypsy 9499 9693 141 - . . scaffold186 WUBlastX DNA_Maverick 10452 11402 403 - . . scaffold186 WUBlastX DNA_Maverick 10662 11402 407 - . . scaffold186 WUBlastX DNA_Harbinger 16351 16593 49 + . . scaffold186 WUBlastX DNA_Harbinger 16363 16542 58 + . . scaffold186 TRF Tandem_Repeat 18635 18661 54 + . . scaffold186 TRF Tandem_Repeat 20530 21533 1298 + . . scaffold186 TRF Tandem_Repeat 21544 21574 53 + . . scaffold186 GLEAN promoter 22019 23018 0.349537 + . ID=CGI_10012601; scaffold186 TRF Tandem_Repeat 22103 22149 94 + . . scaffold186 WUBlastX DNA_Harbinger 22971 23354 85 + . . scaffold186 GLEAN mRNA 23019 24333 0.349537 + . ID=CGI_10012601; scaffold186 WUBlastX DNA_Harbinger 23578 23826 219 + . . scaffold186 WUBlastX DNA_Harbinger 24112 24330 67 + . . scaffold186 GLEAN promoter 24622 25621 0.366701 + . ID=CGI_10012602; scaffold186 GLEAN mRNA 25622 26612 0.366701 + . ID=CGI_10012602; scaffold186 GLEAN promoter 25657 26656 0.617824 + . ID=CGI_10012603; scaffold186 WUBlastX DNA_Kolobok-Hyd 26264 27292 26 + . . scaffold186 WUBlastX DNA_Kolobok-Hyd 26381 26437 41 + . . scaffold186 WUBlastX DNA_Kolobok-Hyd 26567 26884 36 + . . scaffold186 GLEAN mRNA 26657 27313 0.617824 + . ID=CGI_10012603; scaffold186 GLEAN promoter 26833 27832 0.784764 + . ID=CGI_10012604; scaffold186 GLEAN mRNA 27833 30045 0.784764 + . ID=CGI_10012604; scaffold186 TRF Tandem_Repeat 34072 34859 1070 + . . scaffold186 TRF Tandem_Repeat 34886 34936 75 + . . scaffold186 TRF Tandem_Repeat 34890 34937 60 + . . scaffold186 GLEAN promoter 41741 42740 0.980316 + . ID=CGI_10012605; scaffold186 GLEAN mRNA 42741 54132 0.980316 + . ID=CGI_10012605; scaffold186 TRF Tandem_Repeat 50202 50260 109 + . . scaffold186 TRF Tandem_Repeat 50202 50256 65 + . . scaffold186 TRF Tandem_Repeat 50268 51059 1107 + . . scaffold186 GLEAN promoter 54685 55684 0.788177 + . ID=CGI_10012606; scaffold186 GLEAN mRNA 55685 71526 0.788177 + . ID=CGI_10012606; scaffold186 TRF Tandem_Repeat 57792 57827 56 + . . scaffold186 TRF Tandem_Repeat 67042 67083 68 + . . scaffold186 GLEAN promoter 72472 73471 0.841771 + . ID=CGI_10012607; scaffold186 GLEAN mRNA 73472 77530 0.841771 + . ID=CGI_10012607; scaffold186 TRF Tandem_Repeat 75493 75547 110 + . . scaffold186 TRF Tandem_Repeat 76460 76546 140 + . . scaffold186 WUBlastX LINE_CR1 81004 81291 41 + . . scaffold186 WUBlastX LINE_CR1 81121 81249 41 + . . scaffold186 WUBlastX LINE_CR1 81283 81591 92 + . . scaffold186 TRF Tandem_Repeat 83905 83950 92 + . . scaffold186 GLEAN promoter 83979 84978 0.749266 + . ID=CGI_10012608; scaffold186 GLEAN mRNA 84979 85302 0.749266 + . ID=CGI_10012608; scaffold186 GLEAN promoter 87308 88307 0.529783 + . ID=CGI_10012609; scaffold186 GLEAN mRNA 88308 120464 0.529783 + . ID=CGI_10012609; scaffold186 TRF Tandem_Repeat 92909 92936 56 + . . scaffold186 TRF Tandem_Repeat 116298 116366 111 + . . scaffold186 TRF Tandem_Repeat 116310 116369 68 + . . scaffold186 TRF Tandem_Repeat 116310 116378 96 + . . scaffold186 TRF Tandem_Repeat 116316 116380 61 + . . scaffold186 TRF Tandem_Repeat 122887 123254 386 + . . scaffold186 TRF Tandem_Repeat 122887 123260 222 + . . scaffold186 TRF Tandem_Repeat 122887 123263 336 + . . scaffold186 TRF Tandem_Repeat 122929 123263 258 + . . scaffold186 GLEAN mRNA 126648 131178 1 - . ID=CGI_10012610; scaffold186 GLEAN promoter 131179 132178 1 - . ID=CGI_10012610; scaffold186 GLEAN promoter 131772 132771 1 + . ID=CGI_10012611; scaffold186 GLEAN mRNA 132772 141611 1 + . ID=CGI_10012611; scaffold186 GLEAN mRNA 146097 146849 0.957283 - . ID=CGI_10012612; scaffold186 GLEAN promoter 146850 147849 0.957283 - . ID=CGI_10012612; scaffold186 TRF Tandem_Repeat 151417 151489 146 + . . scaffold186 TRF Tandem_Repeat 156902 156989 158 + . . scaffold186 TRF Tandem_Repeat 158897 158951 110 + . . scaffold186 GLEAN promoter 166562 167561 0.7422 + . ID=CGI_10012613; scaffold186 GLEAN mRNA 167562 182126 0.7422 + . ID=CGI_10012613; scaffold186 TRF Tandem_Repeat 178156 178187 64 + . . scaffold186 GLEAN promoter 198440 199439 0.398136 + . ID=CGI_10012614; scaffold186 GLEAN mRNA 199440 207075 0.398136 + . ID=CGI_10012614; scaffold186 WUBlastX LINE_RTE-X 211426 211683 40 + . . scaffold186 WUBlastX LINE_RTE-X 211495 211689 103 + . . scaffold186 WUBlastX LINE_RTE-X 211686 211823 91 + . . scaffold186 WUBlastX LINE_RTE-X 211689 211961 59 + . . scaffold186 GLEAN promoter 223356 224355 0.99998 + . ID=CGI_10012615; scaffold186 WUBlastX LINE_RTE-X 223691 223876 49 + . . scaffold186 GLEAN mRNA 224356 240570 0.99998 + . ID=CGI_10012615; scaffold186 GLEAN mRNA 224585 255140 0.999343 - . ID=CGI_10012616; scaffold186 WUBlastX DNA_TcMar-Tc2 230631 231107 107 + . . scaffold186 WUBlastX DNA_TcMar-Tc2 230739 231161 120 + . . scaffold186 WUBlastX LINE_L1-Tx1 240584 240847 23 + . . scaffold186 TRF Tandem_Repeat 249637 249679 54 + . . scaffold186 GLEAN promoter 255141 256140 0.999343 - . ID=CGI_10012616; scaffold186 WUBlastX DNA_IS4EU 259284 260792 331 + . . scaffold186 WUBlastX LINE_RTE-X 274954 275124 77 - . . scaffold186 WUBlastX LINE_RTE-X 274957 275262 32 - . . scaffold186 WUBlastX LINE_RTE-X 274975 275151 49 - . . scaffold186 WUBlastX LINE_RTE-X 275626 275700 37 - . . scaffold186 WUBlastX LINE_RTE-X 275647 275721 40 - . . scaffold186 WUBlastX LINE_RTE-X 275647 275748 36 - . . scaffold186 WUBlastX DNA_Merlin 275955 276023 40 - . . scaffold186 WUBlastX DNA_Merlin 276935 277159 116 - . . scaffold186 WUBlastX DNA_Merlin 277074 277280 83 - . . scaffold186 WUBlastX DNA_Merlin 277101 277421 81 - . . scaffold186 WUBlastX LINE_RTE-BovB 280546 281070 361 + . . scaffold186 WUBlastX LINE_RTE-BovB 281061 281522 341 + . . scaffold186 TRF Tandem_Repeat 284066 284876 724 + . . scaffold186 TRF Tandem_Repeat 284199 284876 726 + . . scaffold186 TRF Tandem_Repeat 286524 286581 82 + . . scaffold186 TRF Tandem_Repeat 286527 286580 65 + . . scaffold186 TRF Tandem_Repeat 292519 292697 238 + . . scaffold186 TRF Tandem_Repeat 292519 292697 288 + . . scaffold186 TRF Tandem_Repeat 293496 293736 335 + . . scaffold186 WUBlastX LTR_DIRS 293794 294366 119 + . . scaffold186 WUBlastX LTR_Pao 294263 294385 32 + . . scaffold186 WUBlastX LTR_DIRS 294519 294800 137 + . . scaffold186 WUBlastX LTR_DIRS 294808 295524 348 + . . scaffold186 GLEAN promoter 306651 307650 1 + . ID=CGI_10012617; scaffold186 GLEAN mRNA 307651 309644 1 + . ID=CGI_10012617; scaffold186 GLEAN mRNA 310704 329492 0.999674 - . ID=CGI_10012618; scaffold186 TRF Tandem_Repeat 315426 315498 146 + . . scaffold186 GLEAN promoter 316999 317998 0.999376 + . ID=CGI_10012619; scaffold186 TRF Tandem_Repeat 317882 317914 66 + . . scaffold186 GLEAN mRNA 317999 322008 0.999376 + . ID=CGI_10012619; scaffold186 TRF Tandem_Repeat 319791 320800 1036 + . . scaffold186 TRF Tandem_Repeat 326247 326343 187 + . . scaffold186 TRF Tandem_Repeat 326649 326711 126 + . . scaffold186 GLEAN promoter 329493 330456 0.999674 - . ID=CGI_10012618; scaffold1860 GLEAN promoter 5162 6161 1 + . ID=CGI_10013932; scaffold1860 GLEAN mRNA 6162 7793 1 + . ID=CGI_10013932; scaffold1860 TRF Tandem_Repeat 13992 14042 84 + . . scaffold1860 TRF Tandem_Repeat 16777 16829 106 + . . scaffold1860 TRF Tandem_Repeat 17414 17555 97 + . . scaffold1860 GLEAN promoter 17645 18644 0.889365 + . ID=CGI_10013933; scaffold1860 GLEAN mRNA 18645 21581 0.889365 + . ID=CGI_10013933; scaffold1860 TRF Tandem_Repeat 22484 22525 84 + . . scaffold1860 TRF Tandem_Repeat 29741 29781 59 + . . scaffold1860 TRF Tandem_Repeat 29742 29789 60 + . . scaffold1860 GLEAN promoter 31850 32849 0.544816 + . ID=CGI_10013934; scaffold1860 GLEAN mRNA 32850 34167 0.544816 + . ID=CGI_10013934; scaffold1860 TRF Tandem_Repeat 34480 34527 96 + . . scaffold1860 TRF Tandem_Repeat 35075 35128 108 + . . scaffold1860 GLEAN promoter 38174 39173 1 + . ID=CGI_10013935; scaffold1860 GLEAN mRNA 39174 42202 1 + . ID=CGI_10013935; scaffold1860 TRF Tandem_Repeat 43251 43340 180 + . . scaffold1860 TRF Tandem_Repeat 56850 57544 1237 + . . scaffold1860 TRF Tandem_Repeat 56850 57544 1003 + . . scaffold1860 TRF Tandem_Repeat 56930 57544 1024 + . . scaffold1860 GLEAN promoter 60067 61066 1 + . ID=CGI_10013936; scaffold1860 GLEAN mRNA 61067 62242 1 + . ID=CGI_10013936; scaffold1860 TRF Tandem_Repeat 64648 64685 58 + . . scaffold1860 GLEAN mRNA 67268 84429 0.651134 - . ID=CGI_10013937; scaffold1860 TRF Tandem_Repeat 69447 69504 116 + . . scaffold1860 GLEAN promoter 72054 73053 0.999812 + . ID=CGI_10013938; scaffold1860 GLEAN mRNA 73054 73650 0.999812 + . ID=CGI_10013938; scaffold1860 GLEAN promoter 76850 77849 0.999996 + . ID=CGI_10013939; scaffold1860 GLEAN mRNA 77850 84784 0.999996 + . ID=CGI_10013939; scaffold1860 GLEAN promoter 84430 85429 0.651134 - . ID=CGI_10013937; scaffold1860 GLEAN promoter 85890 86889 0.482927 + . ID=CGI_10013940; scaffold1860 GLEAN mRNA 86890 98787 0.482927 + . ID=CGI_10013940; scaffold1860 TRF Tandem_Repeat 90920 90944 50 + . . scaffold1860 WUBlastX LINE_RTE-BovB 92351 92830 155 - . . scaffold1860 TRF Tandem_Repeat 94634 94687 108 + . . scaffold1860 TRF Tandem_Repeat 95461 95665 367 + . . scaffold1860 WUBlastX LINE_L1-Tx1 97081 97206 38 - . . scaffold1860 WUBlastX LINE_L1 97181 97372 42 - . . scaffold1860 WUBlastX LINE_L1-Tx1 97229 97372 49 - . . scaffold1860 WUBlastX LINE_L1 97420 97527 57 - . . scaffold1860 WUBlastX LINE_L1-Tx1 97420 97605 54 - . . scaffold1860 WUBlastX LINE_L1-Tx1 97420 97650 43 - . . scaffold1860 WUBlastX LINE_L1-Tx1 97743 98312 73 - . . scaffold1860 GLEAN promoter 105808 106807 1 + . ID=CGI_10013941; scaffold1860 GLEAN mRNA 106808 111043 1 + . ID=CGI_10013941; scaffold1860 TRF Tandem_Repeat 110130 110172 86 + . . scaffold1860 TRF Tandem_Repeat 113856 113913 82 + . . scaffold1860 GLEAN mRNA 115404 123003 1 - . ID=CGI_10013942; scaffold1860 GLEAN promoter 123004 124003 1 - . ID=CGI_10013942; scaffold1860 GLEAN promoter 123125 124124 0.993584 + . ID=CGI_10013943; scaffold1860 GLEAN mRNA 124125 136849 0.993584 + . ID=CGI_10013943; scaffold1860 GLEAN mRNA 139148 142648 0.815852 - . ID=CGI_10013944; scaffold1860 GLEAN promoter 142649 143648 0.815852 - . ID=CGI_10013944; scaffold1860 TRF Tandem_Repeat 147402 147443 84 + . . scaffold1860 GLEAN mRNA 150765 164457 1 - . ID=CGI_10013945; scaffold1860 GLEAN promoter 164458 165457 1 - . ID=CGI_10013945; scaffold1860 GLEAN promoter 164730 165729 1 + . ID=CGI_10013946; scaffold1860 GLEAN mRNA 165730 168930 1 + . ID=CGI_10013946; scaffold1860 GLEAN mRNA 172445 186766 0.996819 - . ID=CGI_10013947; scaffold1860 TRF Tandem_Repeat 174056 174313 276 + . . scaffold1860 GLEAN promoter 186767 187766 0.996819 - . ID=CGI_10013947; scaffold1860 TRF Tandem_Repeat 187127 187177 102 + . . scaffold1860 TRF Tandem_Repeat 189692 189751 120 + . . scaffold1860 TRF Tandem_Repeat 194607 194676 59 + . . scaffold1860 TRF Tandem_Repeat 194608 194664 64 + . . scaffold1860 GLEAN promoter 199208 200207 0.754258 + . ID=CGI_10013948; scaffold1860 GLEAN mRNA 200208 209975 0.754258 + . ID=CGI_10013948; scaffold1860 TRF Tandem_Repeat 202624 202688 60 + . . scaffold1860 GLEAN mRNA 212214 217370 1 - . ID=CGI_10013949; scaffold1860 GLEAN promoter 217371 218370 1 - . ID=CGI_10013949; scaffold1860 TRF Tandem_Repeat 236022 236057 72 + . . scaffold1860 WUBlastX LINE_L1-Tx1 244459 244830 41 + . . scaffold1860 WUBlastX LINE_L1-Tx1 244546 244812 48 + . . scaffold1860 WUBlastX LINE_L1-Tx1 244609 244827 71 + . . scaffold1860 WUBlastX LINE_L1 244612 244797 74 + . . scaffold1860 WUBlastX LINE_L1-Tx1 244835 245068 71 + . . scaffold1860 WUBlastX LINE_L1 245907 245999 35 + . . scaffold1860 TRF Tandem_Repeat 250563 250635 146 + . . scaffold1860 WUBlastX DNA_Merlin 260405 261298 336 - . . scaffold1860 TRF Tandem_Repeat 265082 265129 96 + . . scaffold1860 TRF Tandem_Repeat 265817 265864 51 + . . scaffold1860 WUBlastX LINE_L2 267588 268013 22 - . . scaffold1860 WUBlastX LTR_DIRS 273401 274339 505 - . . scaffold1860 TRF Tandem_Repeat 274503 274742 168 + . . scaffold1860 WUBlastX LTR_DIRS 274800 276701 800 - . . scaffold1860 WUBlastX LTR_Gypsy 275991 276872 134 - . . scaffold1860 WUBlastX LTR_DIRS 277021 277536 77 - . . scaffold1860 TRF Tandem_Repeat 294530 294583 99 + . . scaffold1860 TRF Tandem_Repeat 303717 303752 72 + . . scaffold1860 WUBlastX LINE_RTE-X 313213 313470 45 - . . scaffold1860 WUBlastX LINE_RTE-X 313485 314756 131 - . . scaffold1860 WUBlastX LINE_RTE-X 313518 314207 171 - . . scaffold1860 WUBlastX LINE_L2-Hydra 314926 315459 42 - . . scaffold1860 WUBlastX LINE_Proto2 316231 316404 20 - . . scaffold1860 TRF Tandem_Repeat 323687 323744 107 + . . scaffold1860 GLEAN promoter 328243 329242 0.916009 + . ID=CGI_10013950; scaffold1860 GLEAN mRNA 329243 343922 0.916009 + . ID=CGI_10013950; scaffold1860 TRF Tandem_Repeat 329745 329793 98 + . . scaffold1860 WUBlastX LINE_Rex-Babar 334123 334524 61 - . . scaffold1860 WUBlastX LINE_RTE-X 334219 334761 32 - . . scaffold1860 WUBlastX LINE_RTE-X 334222 334659 201 - . . scaffold1860 TRF Tandem_Repeat 340325 340380 50 + . . scaffold1860 TRF Tandem_Repeat 340337 340380 61 + . . scaffold1860 TRF Tandem_Repeat 344086 344152 71 + . . scaffold1860 TRF Tandem_Repeat 344881 344917 74 + . . scaffold1860 TRF Tandem_Repeat 347322 347388 80 + . . scaffold1860 WUBlastX LTR_DIRS 348208 348849 180 + . . scaffold1860 WUBlastX LTR_DIRS 348843 349103 102 + . . scaffold1860 WUBlastX LTR_DIRS 349013 349402 111 + . . scaffold1860 WUBlastX LTR_DIRS 349118 349447 261 + . . scaffold1860 GLEAN promoter 349724 350723 0.982633 + . ID=CGI_10013951; scaffold1860 WUBlastX LTR_Gypsy 349945 350145 30 + . . scaffold1860 WUBlastX LTR_DIRS 349948 350115 47 + . . scaffold1860 GLEAN mRNA 350724 354266 0.982633 + . ID=CGI_10013951; scaffold1860 TRF Tandem_Repeat 351800 351875 107 + . . scaffold1860 TRF Tandem_Repeat 351949 351995 60 + . . scaffold1860 WUBlastX LINE_Penelope 354827 355231 33 + . . scaffold1860 WUBlastX LINE_Penelope 354878 355423 26 + . . scaffold1860 WUBlastX LINE_Penelope 354890 355327 43 + . . scaffold1860 WUBlastX LINE_L1-Tx1 355516 356340 115 - . . scaffold1860 WUBlastX LINE_L1-Tx1 356364 358343 477 - . . scaffold1860 GLEAN mRNA 363149 368411 0.993905 - . ID=CGI_10013952; scaffold1860 GLEAN promoter 368412 369411 0.993905 - . ID=CGI_10013952; scaffold1861 GLEAN mRNA 7650 11265 0.985667 - . ID=CGI_10004667; scaffold1861 TRF Tandem_Repeat 7971 8019 98 + . . scaffold1861 GLEAN promoter 11266 12265 0.985667 - . ID=CGI_10004667; scaffold1861 GLEAN mRNA 18142 27610 0.98495 - . ID=CGI_10004668; scaffold1861 WUBlastX DNA_Crypton 22826 23020 62 + . . scaffold1861 GLEAN promoter 27611 28610 0.98495 - . ID=CGI_10004668; scaffold1861 TRF Tandem_Repeat 32376 32548 170 + . . scaffold1861 GLEAN promoter 32431 33430 0.661012 + . ID=CGI_10004669; scaffold1861 TRF Tandem_Repeat 32594 32683 72 + . . scaffold1861 TRF Tandem_Repeat 32762 32855 89 + . . scaffold1861 GLEAN mRNA 33431 44819 0.661012 + . ID=CGI_10004669; scaffold1861 TRF Tandem_Repeat 37947 37992 56 + . . scaffold1861 TRF Tandem_Repeat 37950 37988 60 + . . scaffold1861 WUBlastX DNA_Crypton 40283 40729 49 + . . scaffold1861 TRF Tandem_Repeat 45037 45085 75 + . . scaffold1861 GLEAN mRNA 54922 74772 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 56559 56643 84 + . . scaffold1861 TRF Tandem_Repeat 57053 57242 245 + . . scaffold1861 TRF Tandem_Repeat 57060 57214 139 + . . scaffold1861 TRF Tandem_Repeat 57242 57379 107 + . . scaffold1861 TRF Tandem_Repeat 57443 57528 64 + . . scaffold1861 TRF Tandem_Repeat 61322 61406 84 + . . scaffold1861 TRF Tandem_Repeat 61491 61684 145 + . . scaffold1861 TRF Tandem_Repeat 61493 61684 231 + . . scaffold1861 TRF Tandem_Repeat 61684 61821 107 + . . scaffold1861 TRF Tandem_Repeat 65514 65567 108 + . . scaffold1861 TRF Tandem_Repeat 72151 72954 471 + . . scaffold1861 TRF Tandem_Repeat 72158 72912 293 + . . scaffold1861 TRF Tandem_Repeat 72821 72943 88 + . . scaffold1861 TRF Tandem_Repeat 72852 72976 115 + . . scaffold1861 GLEAN promoter 74773 75772 0.354743 - . ID=CGI_10004670; scaffold1861 TRF Tandem_Repeat 81718 81747 60 + . . scaffold1861 TRF Tandem_Repeat 84856 84892 65 + . . scaffold1861 TRF Tandem_Repeat 85075 85140 132 + . . scaffold1861 TRF Tandem_Repeat 85659 85721 63 + . . scaffold1861 WUBlastX LINE_Penelope 88561 89052 60 - . . scaffold1861 TRF Tandem_Repeat 90742 90823 155 + . . scaffold1861 GLEAN promoter 95459 96458 0.776794 + . ID=CGI_10004672; scaffold1861 GLEAN mRNA 96459 96713 0.776794 + . ID=CGI_10004672; scaffold1862 GLEAN mRNA 304 12683 0.958579 - . ID=CGI_10021884; scaffold1862 TRF Tandem_Repeat 1243 1304 80 + . . scaffold1862 TRF Tandem_Repeat 1246 1303 55 + . . scaffold1862 GLEAN promoter 12684 13683 0.958579 - . ID=CGI_10021884; scaffold1862 GLEAN mRNA 15384 24307 0.996037 - . ID=CGI_10021885; scaffold1862 TRF Tandem_Repeat 18870 18918 89 + . . scaffold1862 GLEAN promoter 24308 25307 0.996037 - . ID=CGI_10021885; scaffold1862 GLEAN promoter 60915 61914 0.53033 + . ID=CGI_10021886; scaffold1862 GLEAN mRNA 61915 63639 0.53033 + . ID=CGI_10021886; scaffold1862 TRF Tandem_Repeat 64913 65006 109 + . . scaffold1862 TRF Tandem_Repeat 65091 65182 85 + . . scaffold1862 TRF Tandem_Repeat 65231 65396 158 + . . scaffold1862 TRF Tandem_Repeat 65467 65558 94 + . . scaffold1862 TRF Tandem_Repeat 67237 67283 94 + . . scaffold1862 TRF Tandem_Repeat 69216 69384 189 + . . scaffold1862 TRF Tandem_Repeat 73800 73868 50 + . . scaffold1862 TRF Tandem_Repeat 73811 74116 297 + . . scaffold1862 TRF Tandem_Repeat 73832 74116 525 + . . scaffold1862 WUBlastX DNA_En-Spm 75944 78220 1347 - . . scaffold1862 WUBlastX DNA_En-Spm 77372 78502 126 - . . scaffold1862 GLEAN promoter 82821 83820 0.640095 + . ID=CGI_10021887; scaffold1862 GLEAN mRNA 83821 89704 0.640095 + . ID=CGI_10021887; scaffold1862 TRF Tandem_Repeat 101354 101386 66 + . . scaffold1862 WUBlastX LINE_I 105442 105546 23 + . . scaffold1862 WUBlastX LINE_RTE-X 105760 105969 33 + . . scaffold1862 WUBlastX LINE_RTE-X 105968 106972 375 + . . scaffold1862 WUBlastX LINE_RTE-X 106573 107055 52 + . . scaffold1862 GLEAN promoter 111497 112496 1 + . ID=CGI_10021888; scaffold1862 TRF Tandem_Repeat 111868 111917 100 + . . scaffold1862 GLEAN mRNA 112497 117811 1 + . ID=CGI_10021888; scaffold1862 TRF Tandem_Repeat 118581 118720 226 + . . scaffold1862 GLEAN mRNA 120142 135554 0.993836 - . ID=CGI_10021889; scaffold1862 TRF Tandem_Repeat 126568 127364 1148 + . . scaffold1862 TRF Tandem_Repeat 130302 130370 129 + . . scaffold1862 TRF Tandem_Repeat 131699 131755 55 + . . scaffold1862 TRF Tandem_Repeat 131703 131769 57 + . . scaffold1862 GLEAN promoter 135555 136554 0.993836 - . ID=CGI_10021889; scaffold1862 GLEAN promoter 136266 137265 0.648527 + . ID=CGI_10021890; scaffold1862 GLEAN mRNA 137266 141475 0.648527 + . ID=CGI_10021890; scaffold1862 TRF Tandem_Repeat 138763 138857 172 + . . scaffold1862 TRF Tandem_Repeat 138763 138967 299 + . . scaffold1862 TRF Tandem_Repeat 138861 138967 205 + . . scaffold1862 WUBlastX LTR_Ngaro 159790 160026 152 + . . scaffold1862 GLEAN mRNA 161063 169000 0.863776 - . ID=CGI_10021891; scaffold1862 GLEAN promoter 168768 169767 0.999372 + . ID=CGI_10021892; scaffold1862 GLEAN promoter 169001 170000 0.863776 - . ID=CGI_10021891; scaffold1862 GLEAN mRNA 169768 169959 0.999372 + . ID=CGI_10021892; scaffold1862 GLEAN mRNA 170077 209119 0.953083 - . ID=CGI_10021893; scaffold1862 TRF Tandem_Repeat 170650 170712 126 + . . scaffold1862 TRF Tandem_Repeat 179906 179930 50 + . . scaffold1862 WUBlastX LINE_L1 189690 190310 248 + . . scaffold1862 WUBlastX LINE_L1-Tx1 189804 190298 352 + . . scaffold1862 WUBlastX LINE_L1-Tx1 190181 190837 308 + . . scaffold1862 WUBlastX LINE_L1 190301 190933 177 + . . scaffold1862 WUBlastX LINE_L1 190891 191364 47 + . . scaffold1862 WUBlastX LINE_L1-Tx1 191071 191376 72 + . . scaffold1862 WUBlastX LINE_L1 194597 195139 97 + . . scaffold1862 WUBlastX LINE_L1-Tx1 194711 195166 187 + . . scaffold1862 WUBlastX LINE_L1-Tx1 194792 195166 243 + . . scaffold1862 WUBlastX LINE_L1-Tx1 195171 196733 335 + . . scaffold1862 GLEAN promoter 209120 210119 0.953083 - . ID=CGI_10021893; scaffold1862 TRF Tandem_Repeat 217814 217871 64 + . . scaffold1862 TRF Tandem_Repeat 218043 219200 1238 + . . scaffold1862 TRF Tandem_Repeat 229476 230407 713 + . . scaffold1862 WUBlastX DNA_Sola 231950 232339 62 + . . scaffold1862 WUBlastX DNA_Sola 234925 235767 335 + . . scaffold1862 WUBlastX DNA_Sola 236386 236607 73 + . . scaffold1862 WUBlastX DNA_Sola 236973 237176 124 + . . scaffold1862 WUBlastX DNA_Sola 237145 237756 328 + . . scaffold1862 WUBlastX DNA_Sola 237145 238476 242 + . . scaffold1862 WUBlastX DNA_Sola 237943 238449 243 + . . scaffold1862 GLEAN mRNA 239301 244575 0.593234 - . ID=CGI_10021894; scaffold1862 TRF Tandem_Repeat 243855 243894 73 + . . scaffold1862 GLEAN promoter 244576 245575 0.593234 - . ID=CGI_10021894; scaffold1862 GLEAN promoter 245863 246862 1 + . ID=CGI_10021895; scaffold1862 GLEAN mRNA 246863 252713 1 + . ID=CGI_10021895; scaffold1862 TRF Tandem_Repeat 249778 249826 89 + . . scaffold1862 WUBlastX LINE_CR1 257419 257826 22 + . . scaffold1862 WUBlastX LINE_CR1 257491 257949 125 + . . scaffold1862 WUBlastX LINE_CR1 257527 257862 151 + . . scaffold1862 WUBlastX LINE_CR1 257900 258211 149 + . . scaffold1862 WUBlastX LINE_CR1 257951 258205 217 + . . scaffold1862 WUBlastX LINE_L2 257951 258295 112 + . . scaffold1862 WUBlastX LINE_CR1 258228 258374 65 + . . scaffold1862 GLEAN promoter 260647 261646 1 + . ID=CGI_10021896; scaffold1862 GLEAN mRNA 261647 270881 1 + . ID=CGI_10021896; scaffold1862 TRF Tandem_Repeat 266602 266644 86 + . . scaffold1862 TRF Tandem_Repeat 268701 269479 1008 + . . scaffold1862 GLEAN mRNA 272955 274961 0.982388 - . ID=CGI_10021897; scaffold1862 GLEAN promoter 274962 275961 0.982388 - . ID=CGI_10021897; scaffold1862 TRF Tandem_Repeat 305338 306208 1250 + . . scaffold1862 GLEAN promoter 306841 307840 0.513253 + . ID=CGI_10021898; scaffold1862 GLEAN mRNA 307841 321442 0.513253 + . ID=CGI_10021898; scaffold1862 TRF Tandem_Repeat 311031 311687 1041 + . . scaffold1862 TRF Tandem_Repeat 311253 311573 143 + . . scaffold1862 TRF Tandem_Repeat 311253 311398 58 + . . scaffold1862 TRF Tandem_Repeat 311306 311653 138 + . . scaffold1862 TRF Tandem_Repeat 311445 311609 80 + . . scaffold1862 TRF Tandem_Repeat 312895 313216 509 + . . scaffold1862 TRF Tandem_Repeat 313712 313750 78 + . . scaffold1862 TRF Tandem_Repeat 314153 314423 416 + . . scaffold1862 TRF Tandem_Repeat 314919 314987 138 + . . scaffold1862 TRF Tandem_Repeat 324333 324388 112 + . . scaffold1862 TRF Tandem_Repeat 325119 325528 540 + . . scaffold1862 GLEAN promoter 330712 331711 0.999981 + . ID=CGI_10021899; scaffold1862 GLEAN mRNA 331712 332704 0.999981 + . ID=CGI_10021899; scaffold1862 GLEAN promoter 346022 347021 0.999999 + . ID=CGI_10021900; scaffold1862 GLEAN promoter 346416 347415 0.465666 + . ID=CGI_10021901; scaffold1862 GLEAN mRNA 347022 347237 0.999999 + . ID=CGI_10021900; scaffold1862 GLEAN mRNA 347416 381134 0.465666 + . ID=CGI_10021901; scaffold1862 TRF Tandem_Repeat 357429 357480 104 + . . scaffold1862 TRF Tandem_Repeat 361358 361432 141 + . . scaffold1862 TRF Tandem_Repeat 361489 361574 63 + . . scaffold1862 TRF Tandem_Repeat 361506 361572 98 + . . scaffold1862 TRF Tandem_Repeat 368081 368108 56 + . . scaffold1862 TRF Tandem_Repeat 368108 368138 62 + . . scaffold1862 TRF Tandem_Repeat 368494 368971 609 + . . scaffold1862 TRF Tandem_Repeat 368494 368971 594 + . . scaffold1862 TRF Tandem_Repeat 377025 377262 253 + . . scaffold1862 GLEAN promoter 380497 381496 0.721379 + . ID=CGI_10021902; scaffold1862 GLEAN mRNA 381497 385072 0.721379 + . ID=CGI_10021902; scaffold1862 TRF Tandem_Repeat 382302 382704 653 + . . scaffold1862 GLEAN promoter 385043 386042 0.999735 + . ID=CGI_10021903; scaffold1862 GLEAN mRNA 386043 392954 0.999735 + . ID=CGI_10021903; scaffold1862 TRF Tandem_Repeat 388710 388881 179 + . . scaffold1862 TRF Tandem_Repeat 390480 391290 580 + . . scaffold1862 TRF Tandem_Repeat 390497 391290 933 + . . scaffold1862 TRF Tandem_Repeat 390497 391290 1111 + . . scaffold1862 TRF Tandem_Repeat 393459 393512 108 + . . scaffold1862 GLEAN promoter 395075 396074 0.982419 + . ID=CGI_10021904; scaffold1862 TRF Tandem_Repeat 395374 395405 64 + . . scaffold1862 GLEAN mRNA 396075 397968 0.982419 + . ID=CGI_10021904; scaffold1862 TRF Tandem_Repeat 401117 401269 141 + . . scaffold1862 GLEAN mRNA 401716 404050 0.999897 - . ID=CGI_10021905; scaffold1862 GLEAN promoter 404051 405050 0.999897 - . ID=CGI_10021905; scaffold1862 GLEAN mRNA 405832 406938 0.999897 - . ID=CGI_10021906; scaffold1862 GLEAN promoter 406939 407938 0.999897 - . ID=CGI_10021906; scaffold1862 GLEAN promoter 406940 407939 0.999994 + . ID=CGI_10021907; scaffold1862 GLEAN mRNA 407940 410141 0.999994 + . ID=CGI_10021907; scaffold1862 TRF Tandem_Repeat 410883 410925 86 + . . scaffold1862 TRF Tandem_Repeat 411453 411501 98 + . . scaffold1862 TRF Tandem_Repeat 433183 433563 393 + . . scaffold1862 TRF Tandem_Repeat 433186 433563 440 + . . scaffold1862 TRF Tandem_Repeat 434128 434175 96 + . . scaffold1862 GLEAN promoter 444039 445038 0.999651 + . ID=CGI_10021908; scaffold1862 GLEAN mRNA 445039 452990 0.999651 + . ID=CGI_10021908; scaffold1862 TRF Tandem_Repeat 451601 451626 52 + . . scaffold1862 TRF Tandem_Repeat 455621 456079 686 + . . scaffold1862 GLEAN mRNA 460252 467335 0.648075 - . ID=CGI_10021909; scaffold1862 GLEAN promoter 463461 464460 0.777738 + . ID=CGI_10021910; scaffold1862 GLEAN mRNA 464461 467509 0.777738 + . ID=CGI_10021910; scaffold1862 GLEAN promoter 467336 468335 0.648075 - . ID=CGI_10021909; scaffold1862 TRF Tandem_Repeat 468480 468944 170 + . . scaffold1862 TRF Tandem_Repeat 468480 468944 263 + . . scaffold1862 TRF Tandem_Repeat 468544 469055 282 + . . scaffold1862 TRF Tandem_Repeat 468567 468945 267 + . . scaffold1862 TRF Tandem_Repeat 470327 471240 1292 + . . scaffold1862 TRF Tandem_Repeat 472215 472272 100 + . . scaffold1862 TRF Tandem_Repeat 472216 472269 65 + . . scaffold1862 GLEAN promoter 479793 480792 1 + . ID=CGI_10021911; scaffold1862 GLEAN mRNA 480793 484677 1 + . ID=CGI_10021911; scaffold1862 GLEAN promoter 486442 487441 0.593387 + . ID=CGI_10021912; scaffold1862 GLEAN mRNA 487442 489358 0.593387 + . ID=CGI_10021912; scaffold1862 TRF Tandem_Repeat 489704 489729 52 + . . scaffold1862 TRF Tandem_Repeat 491102 491143 84 + . . scaffold1862 TRF Tandem_Repeat 492113 492147 61 + . . scaffold1862 GLEAN mRNA 492692 498268 0.801585 - . ID=CGI_10021913; scaffold1862 GLEAN promoter 498269 499268 0.801585 - . ID=CGI_10021913; scaffold1862 GLEAN promoter 500772 501771 0.867813 + . ID=CGI_10021914; scaffold1862 GLEAN mRNA 501772 525135 0.867813 + . ID=CGI_10021914; scaffold1862 TRF Tandem_Repeat 511841 512009 230 + . . scaffold1862 TRF Tandem_Repeat 517765 518006 317 + . . scaffold1862 TRF Tandem_Repeat 526195 526338 270 + . . scaffold1862 TRF Tandem_Repeat 529802 529839 58 + . . scaffold1862 GLEAN mRNA 530033 534014 1 - . ID=CGI_10021915; scaffold1862 GLEAN promoter 534015 535014 1 - . ID=CGI_10021915; scaffold1862 TRF Tandem_Repeat 535263 535381 91 + . . scaffold1862 TRF Tandem_Repeat 535993 536086 125 + . . scaffold1862 TRF Tandem_Repeat 536134 536221 135 + . . scaffold1862 WUBlastX LINE_CR1-L2 538365 538814 39 - . . scaffold1862 WUBlastX LINE_L2 538500 538814 98 - . . scaffold1862 WUBlastX LINE_CR1-L2 538807 538995 65 - . . scaffold1862 WUBlastX LINE_CR1-L2 538822 539052 30 - . . scaffold1862 GLEAN promoter 539361 540360 0.423254 + . ID=CGI_10021916; scaffold1862 GLEAN mRNA 540361 570435 0.423254 + . ID=CGI_10021916; scaffold1862 GLEAN mRNA 544445 554221 0.761184 - . ID=CGI_10021917; scaffold1862 TRF Tandem_Repeat 545497 545528 57 + . . scaffold1862 TRF Tandem_Repeat 550526 551618 1683 + . . scaffold1862 TRF Tandem_Repeat 553325 553415 80 + . . scaffold1862 GLEAN promoter 554222 555221 0.761184 - . ID=CGI_10021917; scaffold1862 TRF Tandem_Repeat 570730 570875 111 + . . scaffold1862 TRF Tandem_Repeat 586114 586151 60 + . . scaffold1862 TRF Tandem_Repeat 604022 604060 78 + . . scaffold1862 TRF Tandem_Repeat 608277 609102 979 + . . scaffold1862 TRF Tandem_Repeat 609106 609156 66 + . . scaffold1862 TRF Tandem_Repeat 609109 609151 59 + . . scaffold1862 TRF Tandem_Repeat 609113 609155 50 + . . scaffold1862 TRF Tandem_Repeat 611408 611453 92 + . . scaffold1862 TRF Tandem_Repeat 611494 611529 54 + . . scaffold1862 TRF Tandem_Repeat 615474 615712 289 + . . scaffold1862 GLEAN promoter 616466 617465 0.999817 + . ID=CGI_10021919; scaffold1862 GLEAN mRNA 616824 616982 0.999855 - . ID=CGI_10021918; scaffold1862 GLEAN promoter 616983 617982 0.999855 - . ID=CGI_10021918; scaffold1862 GLEAN mRNA 617466 622089 0.999817 + . ID=CGI_10021919; scaffold1862 TRF Tandem_Repeat 619466 619654 155 + . . scaffold1862 GLEAN promoter 621753 622752 0.990947 + . ID=CGI_10021920; scaffold1862 GLEAN mRNA 622753 640790 0.990947 + . ID=CGI_10021920; scaffold1862 TRF Tandem_Repeat 622759 622891 162 + . . scaffold1862 TRF Tandem_Repeat 623067 623670 746 + . . scaffold1862 TRF Tandem_Repeat 623067 623670 652 + . . scaffold1862 TRF Tandem_Repeat 628445 628727 129 + . . scaffold1862 TRF Tandem_Repeat 628472 628656 96 + . . scaffold1862 TRF Tandem_Repeat 628522 628728 164 + . . scaffold1862 TRF Tandem_Repeat 632116 632390 336 + . . scaffold1862 TRF Tandem_Repeat 648659 649455 1212 + . . scaffold1862 GLEAN mRNA 650276 653004 0.999988 - . ID=CGI_10021921; scaffold1862 TRF Tandem_Repeat 650661 650774 108 + . . scaffold1862 TRF Tandem_Repeat 652387 652804 434 + . . scaffold1862 TRF Tandem_Repeat 652394 652795 553 + . . scaffold1862 GLEAN promoter 653005 654004 0.999988 - . ID=CGI_10021921; scaffold1862 GLEAN mRNA 654269 654442 1 - . ID=CGI_10021922; scaffold1862 GLEAN promoter 654443 655442 1 - . ID=CGI_10021922; scaffold1862 GLEAN mRNA 655247 661635 1 - . ID=CGI_10021923; scaffold1862 TRF Tandem_Repeat 656081 656861 553 + . . scaffold1862 TRF Tandem_Repeat 656181 656941 1218 + . . scaffold1862 TRF Tandem_Repeat 657028 657073 60 + . . scaffold1862 WUBlastX DNA_Kolobok-IS4 657641 658153 51 + . . scaffold1862 WUBlastX DNA_IS4EU 657803 658153 56 + . . scaffold1862 WUBlastX DNA_IS4EU 658552 658866 51 + . . scaffold1862 WUBlastX DNA_IS4EU 658717 659691 141 + . . scaffold1862 WUBlastX DNA_Kolobok-IS4 659029 659691 173 + . . scaffold1862 WUBlastX DNA_IS4EU 659197 659583 187 + . . scaffold1862 WUBlastX DNA_IS4EU 660073 661257 557 - . . scaffold1862 GLEAN promoter 661636 662635 1 - . ID=CGI_10021923; scaffold1862 WUBlastX DNA_IS4EU 661995 662222 40 - . . scaffold1862 TRF Tandem_Repeat 673752 673795 88 + . . scaffold1862 TRF Tandem_Repeat 674857 674898 84 + . . scaffold1862 GLEAN mRNA 679637 689565 0.615282 - . ID=CGI_10021924; scaffold1862 TRF Tandem_Repeat 682254 682294 82 + . . scaffold1862 GLEAN promoter 689566 690565 0.615282 - . ID=CGI_10021924; scaffold1862 WUBlastX LTR_Ngaro 692804 693280 180 - . . scaffold1862 WUBlastX LTR_Ngaro 693293 693541 108 - . . scaffold1862 GLEAN mRNA 697380 698057 0.999376 - . ID=CGI_10021925; scaffold1862 GLEAN promoter 698058 699057 0.999376 - . ID=CGI_10021925; scaffold1862 TRF Tandem_Repeat 710501 710562 117 + . . scaffold1862 WUBlastX LINE_RTE-X 710948 711718 167 - . . scaffold1862 WUBlastX LINE_RTE-X 711089 712579 557 - . . scaffold1862 WUBlastX LINE_L2 712814 712954 22 - . . scaffold1863 TRF Tandem_Repeat 7659 7894 436 + . . scaffold1863 WUBlastX RC_Helitron 12415 14799 631 - . . scaffold1863 WUBlastX RC_Helitron 14808 15149 103 - . . scaffold1863 WUBlastX RC_Helitron 15263 17698 1124 - . . scaffold1863 TRF Tandem_Repeat 17715 18988 2199 + . . scaffold1863 GLEAN mRNA 29271 30914 0.999642 - . ID=CGI_10016677; scaffold1863 WUBlastX LTR_Gypsy 30153 30677 25 - . . scaffold1863 GLEAN promoter 30915 31914 0.999642 - . ID=CGI_10016677; scaffold1863 WUBlastX LINE_L2 52682 52801 28 - . . scaffold1863 WUBlastX LINE_L2 53025 53186 29 - . . scaffold1863 GLEAN promoter 63304 64303 0.69447 + . ID=CGI_10016678; scaffold1863 GLEAN mRNA 64304 64753 0.69447 + . ID=CGI_10016678; scaffold1863 GLEAN mRNA 64523 72904 0.332642 - . ID=CGI_10016679; scaffold1863 WUBlastX DNA_TcMar-Marin 71033 71149 46 + . . scaffold1863 GLEAN promoter 72905 73904 0.332642 - . ID=CGI_10016679; scaffold1863 GLEAN mRNA 72965 74665 0.998077 - . ID=CGI_10016680; scaffold1863 GLEAN promoter 74666 75665 0.998077 - . ID=CGI_10016680; scaffold1863 GLEAN mRNA 78046 79037 0.558158 - . ID=CGI_10016681; scaffold1863 GLEAN promoter 79038 80037 0.558158 - . ID=CGI_10016681; scaffold1863 GLEAN mRNA 79606 86642 0.87294 - . ID=CGI_10016682; scaffold1863 TRF Tandem_Repeat 84807 84843 74 + . . scaffold1863 GLEAN promoter 86643 87642 0.87294 - . ID=CGI_10016682; scaffold1863 GLEAN mRNA 88859 93688 0.593391 - . ID=CGI_10016683; scaffold1863 GLEAN promoter 93689 94688 0.593391 - . ID=CGI_10016683; scaffold1863 GLEAN promoter 96554 97553 0.970544 + . ID=CGI_10016684; scaffold1863 GLEAN mRNA 97554 122611 0.970544 + . ID=CGI_10016684; scaffold1863 TRF Tandem_Repeat 100815 100910 90 + . . scaffold1863 TRF Tandem_Repeat 109678 109894 344 + . . scaffold1863 TRF Tandem_Repeat 114054 114088 54 + . . scaffold1863 TRF Tandem_Repeat 121214 121252 78 + . . scaffold1863 GLEAN mRNA 124487 125353 0.777637 - . ID=CGI_10016685; scaffold1863 GLEAN promoter 125354 126353 0.777637 - . ID=CGI_10016685; scaffold1863 GLEAN promoter 141191 142190 0.44636 + . ID=CGI_10016686; scaffold1863 GLEAN mRNA 142191 144491 0.44636 + . ID=CGI_10016686; scaffold1863 TRF Tandem_Repeat 145239 145275 58 + . . scaffold1863 GLEAN promoter 148787 149786 1 + . ID=CGI_10016687; scaffold1863 GLEAN mRNA 149787 152011 1 + . ID=CGI_10016687; scaffold1863 TRF Tandem_Repeat 152851 152875 50 + . . scaffold1863 TRF Tandem_Repeat 155685 155732 55 + . . scaffold1863 TRF Tandem_Repeat 160398 160509 122 + . . scaffold1863 TRF Tandem_Repeat 161166 161892 821 + . . scaffold1863 GLEAN promoter 161748 162747 1 + . ID=CGI_10016688; scaffold1863 GLEAN mRNA 162748 165293 1 + . ID=CGI_10016688; scaffold1863 WUBlastX LINE_L1-Tx1 171557 171844 64 - . . scaffold1863 TRF Tandem_Repeat 175213 175247 70 + . . scaffold1863 GLEAN promoter 177304 178303 0.999372 + . ID=CGI_10016689; scaffold1863 GLEAN mRNA 178304 178717 0.999372 + . ID=CGI_10016689; scaffold1863 WUBlastX DNA_Harbinger 180164 180361 67 + . . scaffold1863 WUBlastX DNA_Harbinger 180358 180555 86 + . . scaffold1863 WUBlastX DNA_Harbinger 180882 181238 240 - . . scaffold1863 WUBlastX DNA_Harbinger 181315 181677 362 - . . scaffold1863 WUBlastX DNA_Harbinger 181342 181755 49 - . . scaffold1863 WUBlastX DNA_Harbinger 182078 182191 47 - . . scaffold1863 TRF Tandem_Repeat 183610 183731 94 + . . scaffold1863 TRF Tandem_Repeat 185337 185403 89 + . . scaffold1863 TRF Tandem_Repeat 195856 195959 70 + . . scaffold1863 TRF Tandem_Repeat 198205 198248 88 + . . scaffold1863 GLEAN promoter 207599 208598 0.987284 + . ID=CGI_10016690; scaffold1863 GLEAN mRNA 208599 210044 0.987284 + . ID=CGI_10016690; scaffold1863 TRF Tandem_Repeat 219866 220120 392 + . . scaffold1863 GLEAN mRNA 229985 232626 0.776218 - . ID=CGI_10016691; scaffold1863 GLEAN promoter 232627 233626 0.776218 - . ID=CGI_10016691; scaffold1863 WUBlastX LINE_RTE-BovB 238005 238469 193 + . . scaffold1863 WUBlastX LINE_RTE-BovB 238462 238923 281 + . . scaffold1863 WUBlastX LINE_RTE-BovB 238841 238987 42 + . . scaffold1863 GLEAN mRNA 253566 292141 0.240564 - . ID=CGI_10016692; scaffold1863 WUBlastX DNA_hAT-hATw 258705 259100 112 + . . scaffold1863 WUBlastX DNA_hAT-hATw 258930 260093 113 + . . scaffold1863 WUBlastX DNA_hAT-hATw 259152 260114 127 + . . scaffold1863 GLEAN promoter 292142 293141 0.240564 - . ID=CGI_10016692; scaffold1863 GLEAN mRNA 292710 321956 0.398552 - . ID=CGI_10016693; scaffold1863 TRF Tandem_Repeat 295026 295067 75 + . . scaffold1863 WUBlastX LINE_RTE-X 308872 309369 40 + . . scaffold1863 WUBlastX LINE_RTE-X 308920 309339 88 + . . scaffold1863 WUBlastX LINE_RTE-X 309022 309237 105 + . . scaffold1863 TRF Tandem_Repeat 310583 310953 412 + . . scaffold1863 GLEAN promoter 321957 322956 0.398552 - . ID=CGI_10016693; scaffold1863 GLEAN mRNA 322965 342238 0.452482 - . ID=CGI_10016694; scaffold1863 TRF Tandem_Repeat 325170 325560 394 + . . scaffold1863 TRF Tandem_Repeat 325171 325425 348 + . . scaffold1863 TRF Tandem_Repeat 325472 325557 55 + . . scaffold1863 TRF Tandem_Repeat 335314 335369 67 + . . scaffold1863 TRF Tandem_Repeat 335322 335369 51 + . . scaffold1863 GLEAN promoter 342239 343238 0.452482 - . ID=CGI_10016694; scaffold1863 GLEAN mRNA 346869 363711 1 - . ID=CGI_10016695; scaffold1863 TRF Tandem_Repeat 349155 349241 95 + . . scaffold1863 TRF Tandem_Repeat 349472 349639 151 + . . scaffold1863 TRF Tandem_Repeat 362416 362449 52 + . . scaffold1863 GLEAN promoter 363712 364711 1 - . ID=CGI_10016695; scaffold1863 GLEAN promoter 369491 370490 0.892726 + . ID=CGI_10016696; scaffold1863 GLEAN mRNA 370491 381418 0.892726 + . ID=CGI_10016696; scaffold1863 TRF Tandem_Repeat 372186 372259 85 + . . scaffold1863 TRF Tandem_Repeat 372186 372270 80 + . . scaffold1863 TRF Tandem_Repeat 372212 372258 94 + . . scaffold1863 WUBlastX DNA_Harbinger 372276 372554 40 + . . scaffold1863 WUBlastX DNA_Harbinger 372479 373117 91 + . . scaffold1863 WUBlastX DNA_Harbinger 372536 373066 239 + . . scaffold1863 TRF Tandem_Repeat 378938 378985 80 + . . scaffold1863 GLEAN mRNA 384401 385111 0.999998 - . ID=CGI_10016697; scaffold1863 GLEAN promoter 385112 386111 0.999998 - . ID=CGI_10016697; scaffold1863 TRF Tandem_Repeat 391667 391699 66 + . . scaffold1863 TRF Tandem_Repeat 394371 394426 105 + . . scaffold1863 GLEAN mRNA 395805 426659 0.997737 - . ID=CGI_10016698; scaffold1863 TRF Tandem_Repeat 402509 402743 308 + . . scaffold1863 TRF Tandem_Repeat 402538 402743 138 + . . scaffold1863 TRF Tandem_Repeat 409039 409085 67 + . . scaffold1863 TRF Tandem_Repeat 409400 409434 70 + . . scaffold1863 TRF Tandem_Repeat 415964 417071 1062 + . . scaffold1863 TRF Tandem_Repeat 423856 424073 181 + . . scaffold1863 TRF Tandem_Repeat 423856 424117 115 + . . scaffold1863 TRF Tandem_Repeat 423858 424074 265 + . . scaffold1863 TRF Tandem_Repeat 424556 424928 255 + . . scaffold1863 TRF Tandem_Repeat 424556 424883 299 + . . scaffold1863 TRF Tandem_Repeat 424603 424928 263 + . . scaffold1863 TRF Tandem_Repeat 425122 425152 62 + . . scaffold1863 GLEAN promoter 426660 427659 0.997737 - . ID=CGI_10016698; scaffold1863 GLEAN mRNA 439896 443233 0.793197 - . ID=CGI_10016699; scaffold1863 GLEAN promoter 443234 444233 0.793197 - . ID=CGI_10016699; scaffold1863 GLEAN promoter 444523 445522 1 + . ID=CGI_10016700; scaffold1863 GLEAN mRNA 445523 448225 1 + . ID=CGI_10016700; scaffold1863 GLEAN promoter 454387 455386 0.998789 + . ID=CGI_10016701; scaffold1863 GLEAN mRNA 455387 459767 0.998789 + . ID=CGI_10016701; scaffold1863 TRF Tandem_Repeat 456559 456652 102 + . . scaffold1863 TRF Tandem_Repeat 456670 456739 54 + . . scaffold1863 GLEAN mRNA 465147 466988 0.519027 - . ID=CGI_10016702; scaffold1863 GLEAN promoter 466989 467988 0.519027 - . ID=CGI_10016702; scaffold1863 TRF Tandem_Repeat 468757 469344 319 + . . scaffold1863 TRF Tandem_Repeat 468757 469866 785 + . . scaffold1863 TRF Tandem_Repeat 468878 469780 560 + . . scaffold1863 TRF Tandem_Repeat 469085 469869 844 + . . scaffold1863 TRF Tandem_Repeat 469346 469869 386 + . . scaffold1863 TRF Tandem_Repeat 469346 469867 722 + . . scaffold1863 TRF Tandem_Repeat 470349 470399 102 + . . scaffold1863 WUBlastX LINE_L2 471203 472234 488 - . . scaffold1863 WUBlastX LINE_L2 472164 472772 196 - . . scaffold1863 WUBlastX LINE_L2 472215 472661 304 - . . scaffold1863 WUBlastX LINE_CR1 472953 473015 20 - . . scaffold1863 WUBlastX LINE_I 472986 473051 24 - . . scaffold1863 GLEAN promoter 474184 475183 1 + . ID=CGI_10016703; scaffold1863 GLEAN mRNA 475184 476727 1 + . ID=CGI_10016703; scaffold1864 GLEAN mRNA 11904 19935 0.4583 - . ID=CGI_10004428; scaffold1864 TRF Tandem_Repeat 12856 12904 62 + . . scaffold1864 GLEAN promoter 19936 20935 0.4583 - . ID=CGI_10004428; scaffold1864 TRF Tandem_Repeat 20416 20470 110 + . . scaffold1864 GLEAN mRNA 24508 26200 0.999375 - . ID=CGI_10004429; scaffold1864 GLEAN promoter 26201 27200 0.999375 - . ID=CGI_10004429; scaffold1864 GLEAN mRNA 28119 34115 0.552482 - . ID=CGI_10004430; scaffold1864 WUBlastX LINE_RTE-X 31014 31196 32 - . . scaffold1864 GLEAN promoter 34116 35115 0.552482 - . ID=CGI_10004430; scaffold1864 TRF Tandem_Repeat 36463 36489 54 + . . scaffold1864 TRF Tandem_Repeat 36487 36522 72 + . . scaffold1864 GLEAN promoter 39892 40891 0.999999 + . ID=CGI_10004431; scaffold1864 GLEAN mRNA 40892 47593 0.999999 + . ID=CGI_10004431; scaffold1864 TRF Tandem_Repeat 44940 44975 54 + . . scaffold1864 GLEAN promoter 62073 63072 0.512425 + . ID=CGI_10004432; scaffold1864 GLEAN mRNA 63073 68011 0.512425 + . ID=CGI_10004432; scaffold1864 TRF Tandem_Repeat 72536 72572 74 + . . scaffold1864 GLEAN mRNA 72976 97516 1 - . ID=CGI_10004433; scaffold1864 TRF Tandem_Repeat 80220 80270 102 + . . scaffold1864 GLEAN promoter 97517 98516 1 - . ID=CGI_10004433; scaffold1864 TRF Tandem_Repeat 99399 99456 116 + . . scaffold1865 TRF Tandem_Repeat 4460 4500 57 + . . scaffold1865 GLEAN mRNA 12379 14256 1 - . ID=CGI_10013533; scaffold1865 TRF Tandem_Repeat 12434 12474 57 + . . scaffold1865 TRF Tandem_Repeat 12449 12487 51 + . . scaffold1865 GLEAN promoter 14257 15256 1 - . ID=CGI_10013533; scaffold1865 TRF Tandem_Repeat 14452 14720 371 + . . scaffold1865 TRF Tandem_Repeat 20119 20237 152 + . . scaffold1865 TRF Tandem_Repeat 22906 22964 64 + . . scaffold1865 TRF Tandem_Repeat 22910 22965 58 + . . scaffold1865 TRF Tandem_Repeat 23234 23461 197 + . . scaffold1865 TRF Tandem_Repeat 23234 23461 197 + . . scaffold1865 TRF Tandem_Repeat 23234 23461 197 + . . scaffold1865 TRF Tandem_Repeat 25064 25096 66 + . . scaffold1865 TRF Tandem_Repeat 33598 33652 92 + . . scaffold1865 TRF Tandem_Repeat 36492 36529 67 + . . scaffold1865 TRF Tandem_Repeat 36700 36743 88 + . . scaffold1865 WUBlastX DNA_TcMar-Marin 38143 38238 46 - . . scaffold1865 WUBlastX DNA_TcMar-Marin 38262 39089 74 - . . scaffold1865 WUBlastX DNA_TcMar-Marin 38532 39062 89 - . . scaffold1865 TRF Tandem_Repeat 50221 50275 67 + . . scaffold1865 TRF Tandem_Repeat 54301 54354 67 + . . scaffold1865 TRF Tandem_Repeat 54304 54349 76 + . . scaffold1865 TRF Tandem_Repeat 58540 58579 64 + . . scaffold1865 TRF Tandem_Repeat 63377 63426 84 + . . scaffold1865 TRF Tandem_Repeat 64147 64189 86 + . . scaffold1865 TRF Tandem_Repeat 71067 71155 169 + . . scaffold1865 WUBlastX LTR_Gypsy 80964 81602 112 + . . scaffold1865 WUBlastX LTR_Gypsy 81015 81923 77 + . . scaffold1865 WUBlastX LTR_Copia 81720 81962 63 + . . scaffold1865 WUBlastX LTR_Gypsy 82292 82441 26 + . . scaffold1865 WUBlastX LTR_Gypsy-Cigr 82316 84490 957 + . . scaffold1865 WUBlastX LTR_Gypsy 83105 86161 1011 + . . scaffold1865 WUBlastX LTR_Gypsy 83108 84490 1048 + . . scaffold1865 WUBlastX LTR_Pao 86177 86344 66 + . . scaffold1865 WUBlastX LTR_Copia 86815 86874 22 + . . scaffold1865 GLEAN promoter 121219 122218 0.998221 + . ID=CGI_10013535; scaffold1865 GLEAN mRNA 122219 140121 0.998221 + . ID=CGI_10013535; scaffold1865 TRF Tandem_Repeat 124613 124829 254 + . . scaffold1865 TRF Tandem_Repeat 124613 124829 245 + . . scaffold1865 TRF Tandem_Repeat 125474 125861 436 + . . scaffold1865 TRF Tandem_Repeat 125474 125861 564 + . . scaffold1865 WUBlastX DNA_TcMar-Tc1 134537 135226 381 - . . scaffold1865 WUBlastX DNA_TcMar-Tc1 135238 135513 36 - . . scaffold1865 WUBlastX DNA_TcMar-Marin 140420 140644 46 - . . scaffold1865 WUBlastX DNA_TcMar-Marin 140492 140644 59 - . . scaffold1865 WUBlastX DNA_TcMar-Marin 140537 140746 64 - . . scaffold1865 WUBlastX DNA_TcMar-Marin 140543 140647 73 - . . scaffold1865 TRF Tandem_Repeat 142788 142840 88 + . . scaffold1865 TRF Tandem_Repeat 159134 159263 176 + . . scaffold1865 TRF Tandem_Repeat 159798 159958 148 + . . scaffold1865 GLEAN mRNA 162542 168734 0.446905 - . ID=CGI_10013536; scaffold1865 GLEAN promoter 165682 166681 0.998864 + . ID=CGI_10013537; scaffold1865 TRF Tandem_Repeat 165869 165955 72 + . . scaffold1865 GLEAN mRNA 166682 168465 0.998864 + . ID=CGI_10013537; scaffold1865 GLEAN promoter 168735 169734 0.446905 - . ID=CGI_10013536; scaffold1865 GLEAN promoter 174574 175573 1 + . ID=CGI_10013538; scaffold1865 GLEAN mRNA 175574 177373 1 + . ID=CGI_10013538; scaffold1865 GLEAN promoter 189097 190096 0.443753 + . ID=CGI_10013539; scaffold1865 GLEAN mRNA 190097 199693 0.443753 + . ID=CGI_10013539; scaffold1865 GLEAN mRNA 200354 207489 0.820607 - . ID=CGI_10013540; scaffold1865 GLEAN promoter 207490 208489 0.820607 - . ID=CGI_10013540; scaffold1865 GLEAN promoter 207754 208753 1 + . ID=CGI_10013541; scaffold1865 GLEAN mRNA 208754 211659 1 + . ID=CGI_10013541; scaffold1865 TRF Tandem_Repeat 212032 212071 73 + . . scaffold1865 GLEAN mRNA 213408 214649 1 - . ID=CGI_10013542; scaffold1865 GLEAN promoter 214650 215649 1 - . ID=CGI_10013542; scaffold1865 TRF Tandem_Repeat 217597 217644 96 + . . scaffold1865 GLEAN promoter 219126 220125 1 + . ID=CGI_10013543; scaffold1865 TRF Tandem_Repeat 219634 219671 58 + . . scaffold1865 GLEAN mRNA 220126 221177 1 + . ID=CGI_10013543; scaffold1865 GLEAN mRNA 222891 259212 0.998765 - . ID=CGI_10013544; scaffold1865 TRF Tandem_Repeat 226195 226230 72 + . . scaffold1865 WUBlastX LINE_L1-Tx1 236945 237124 31 - . . scaffold1865 GLEAN promoter 240112 241111 1 + . ID=CGI_10013545; scaffold1865 GLEAN mRNA 241112 246339 1 + . ID=CGI_10013545; scaffold1865 GLEAN promoter 259213 260212 0.998765 - . ID=CGI_10013544; scaffold1865 TRF Tandem_Repeat 259617 259754 150 + . . scaffold1865 WUBlastX LINE_RTE-BovB 259864 260118 79 + . . scaffold1865 WUBlastX LINE_RTE-BovB 259954 260148 76 + . . scaffold1865 TRF Tandem_Repeat 260829 260929 121 + . . scaffold1865 WUBlastX LINE_RTE-X 261440 261868 107 - . . scaffold1865 WUBlastX LINE_RTE-X 261557 261985 45 - . . scaffold1865 GLEAN promoter 264739 265738 0.649524 + . ID=CGI_10013546; scaffold1865 GLEAN mRNA 265739 266035 0.649524 + . ID=CGI_10013546; scaffold1865 GLEAN mRNA 265949 318343 0.640148 - . ID=CGI_10013547; scaffold1865 TRF Tandem_Repeat 274539 276147 2089 + . . scaffold1865 TRF Tandem_Repeat 275076 276147 1704 + . . scaffold1865 TRF Tandem_Repeat 282097 282166 70 + . . scaffold1865 TRF Tandem_Repeat 282097 282154 62 + . . scaffold1865 WUBlastX LINE_Proto2 291884 292267 32 + . . scaffold1865 WUBlastX LINE_RTE-X 291986 292576 142 + . . scaffold1865 WUBlastX LINE_RTE-X 293053 293616 67 + . . scaffold1865 WUBlastX LINE_RTE-X 293572 293640 32 + . . scaffold1865 GLEAN promoter 318344 319343 0.640148 - . ID=CGI_10013547; scaffold1865 GLEAN mRNA 330619 333585 1 - . ID=CGI_10013548; scaffold1865 TRF Tandem_Repeat 332773 332821 98 + . . scaffold1865 GLEAN promoter 333586 334585 1 - . ID=CGI_10013548; scaffold1865 TRF Tandem_Repeat 334685 334738 108 + . . scaffold1865 GLEAN mRNA 338647 344058 1 - . ID=CGI_10013549; scaffold1865 TRF Tandem_Repeat 339042 339070 58 + . . scaffold1865 GLEAN promoter 343097 344096 0.999624 + . ID=CGI_10013550; scaffold1865 GLEAN promoter 344059 345058 1 - . ID=CGI_10013549; scaffold1865 GLEAN mRNA 344097 356570 0.999624 + . ID=CGI_10013550; scaffold1865 TRF Tandem_Repeat 351580 351628 98 + . . scaffold1865 TRF Tandem_Repeat 354202 354264 81 + . . scaffold1865 WUBlastX LINE_L2 355701 356030 56 - . . scaffold1865 WUBlastX LINE_CR1-L2 356036 356281 39 - . . scaffold1866 GLEAN mRNA 57 49523 0.446765 - . ID=CGI_10017902; scaffold1866 TRF Tandem_Repeat 16769 16798 51 + . . scaffold1866 TRF Tandem_Repeat 16769 16832 74 + . . scaffold1866 TRF Tandem_Repeat 16788 16832 63 + . . scaffold1866 TRF Tandem_Repeat 17022 17051 60 + . . scaffold1866 TRF Tandem_Repeat 32860 33545 1088 + . . scaffold1866 TRF Tandem_Repeat 45851 47124 1515 + . . scaffold1866 GLEAN promoter 49524 50523 0.446765 - . ID=CGI_10017902; scaffold1866 TRF Tandem_Repeat 51566 51633 136 + . . scaffold1866 GLEAN promoter 52384 53383 1 + . ID=CGI_10017903; scaffold1866 GLEAN mRNA 53384 56225 1 + . ID=CGI_10017903; scaffold1866 WUBlastX LINE_RTE-X 57918 58433 96 - . . scaffold1866 WUBlastX LINE_RTE-X 57996 58433 118 - . . scaffold1866 TRF Tandem_Repeat 60340 60374 70 + . . scaffold1866 GLEAN mRNA 64407 66142 0.996819 - . ID=CGI_10017904; scaffold1866 GLEAN promoter 66143 67142 0.996819 - . ID=CGI_10017904; scaffold1866 GLEAN promoter 96580 97579 0.648545 + . ID=CGI_10017905; scaffold1866 GLEAN mRNA 97580 104830 0.648545 + . ID=CGI_10017905; scaffold1866 TRF Tandem_Repeat 102568 102618 84 + . . scaffold1866 TRF Tandem_Repeat 102629 103465 1096 + . . scaffold1866 GLEAN promoter 107759 108758 0.999676 + . ID=CGI_10017906; scaffold1866 GLEAN mRNA 108759 114148 0.999676 + . ID=CGI_10017906; scaffold1866 TRF Tandem_Repeat 110836 110869 68 + . . scaffold1866 TRF Tandem_Repeat 116722 117539 1163 + . . scaffold1866 TRF Tandem_Repeat 116722 117634 1148 + . . scaffold1866 TRF Tandem_Repeat 126922 126982 51 + . . scaffold1866 TRF Tandem_Repeat 131997 132032 56 + . . scaffold1866 WUBlastX LTR_DIRS 136404 136859 77 + . . scaffold1866 WUBlastX LTR_DIRS 136476 136856 119 + . . scaffold1866 WUBlastX LTR_DIRS 136560 136868 128 + . . scaffold1866 WUBlastX LTR_DIRS 136813 137025 100 + . . scaffold1866 WUBlastX LTR_DIRS 137039 137332 198 + . . scaffold1866 WUBlastX LTR_DIRS 137325 138299 359 + . . scaffold1866 WUBlastX LTR_DIRS 138329 138541 51 + . . scaffold1866 WUBlastX LTR_DIRS 138376 138630 74 + . . scaffold1866 WUBlastX LTR_DIRS 138430 138627 90 + . . scaffold1866 WUBlastX LTR_DIRS 138629 139327 364 + . . scaffold1866 WUBlastX DNA_IS4EU 141307 141423 36 - . . scaffold1866 WUBlastX DNA_IS4EU 141425 141946 120 - . . scaffold1866 WUBlastX DNA_IS4EU 142751 143515 297 + . . scaffold1866 WUBlastX DNA_IS4EU 143578 143640 21 - . . scaffold1866 WUBlastX DNA_IS4EU 143944 144078 22 - . . scaffold1866 WUBlastX DNA_IS4EU 144503 144628 32 - . . scaffold1866 WUBlastX LTR_Copia 154656 154754 32 - . . scaffold1866 WUBlastX LTR_Gypsy 154674 155105 156 - . . scaffold1866 WUBlastX LTR_Gypsy 155104 157215 1727 - . . scaffold1866 WUBlastX LTR_Gypsy 157212 158384 627 - . . scaffold1866 WUBlastX LTR_Gypsy 158404 158583 127 - . . scaffold1866 GLEAN promoter 161379 162378 0.948507 + . ID=CGI_10017907; scaffold1866 GLEAN mRNA 162379 165246 0.948507 + . ID=CGI_10017907; scaffold1866 TRF Tandem_Repeat 170293 170359 71 + . . scaffold1866 WUBlastX LTR_Gypsy 170907 170963 21 - . . scaffold1866 WUBlastX LTR_Gypsy 170958 171701 80 - . . scaffold1866 WUBlastX LTR_Gypsy 171156 171701 139 - . . scaffold1866 WUBlastX LTR_Gypsy 171689 171814 21 - . . scaffold1866 TRF Tandem_Repeat 172647 172706 120 + . . scaffold1866 TRF Tandem_Repeat 173782 173888 124 + . . scaffold1866 TRF Tandem_Repeat 175416 175506 121 + . . scaffold1866 TRF Tandem_Repeat 181883 182117 283 + . . scaffold1866 TRF Tandem_Repeat 182821 183208 467 + . . scaffold1866 TRF Tandem_Repeat 182821 183208 443 + . . scaffold1866 GLEAN promoter 185031 186030 1 + . ID=CGI_10017908; scaffold1866 GLEAN mRNA 186031 187243 1 + . ID=CGI_10017908; scaffold1866 TRF Tandem_Repeat 189182 189249 136 + . . scaffold1866 GLEAN promoter 189505 190504 0.815685 + . ID=CGI_10017909; scaffold1866 GLEAN mRNA 190505 192915 0.815685 + . ID=CGI_10017909; scaffold1866 TRF Tandem_Repeat 194708 194743 72 + . . scaffold1866 GLEAN mRNA 197037 209666 0.769721 - . ID=CGI_10017910; scaffold1866 WUBlastX LINE_CR1 204700 204792 20 + . . scaffold1866 WUBlastX LINE_L2 204721 204900 73 + . . scaffold1866 WUBlastX LINE_L2 204724 204933 54 + . . scaffold1866 WUBlastX LINE_L2 204724 204993 52 + . . scaffold1866 WUBlastX LINE_CR1-L2 205703 205906 31 + . . scaffold1866 WUBlastX LINE_CR1 205960 206106 34 + . . scaffold1866 WUBlastX LINE_CR1-L2 206085 206840 175 + . . scaffold1866 WUBlastX LINE_CR1-L2 206409 206852 203 + . . scaffold1866 WUBlastX LINE_CR1-L2 206893 207615 66 + . . scaffold1866 WUBlastX LINE_CR1-L2 207088 207774 133 + . . scaffold1866 TRF Tandem_Repeat 207955 208003 98 + . . scaffold1866 GLEAN promoter 209667 210666 0.769721 - . ID=CGI_10017910; scaffold1866 TRF Tandem_Repeat 210533 210583 75 + . . scaffold1866 GLEAN mRNA 213130 228131 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LINE_L2 221135 221407 42 - . . scaffold1866 WUBlastX LINE_CR1-L2 221201 221419 133 - . . scaffold1866 WUBlastX LINE_L2 222811 223035 34 + . . scaffold1866 WUBlastX LINE_L2 222850 223080 63 + . . scaffold1866 WUBlastX LINE_L2 222862 223041 80 + . . scaffold1866 WUBlastX LINE_L2 222865 223134 52 + . . scaffold1866 WUBlastX LINE_CR1-L2 223470 223682 47 + . . scaffold1866 WUBlastX LINE_L2 223509 223724 24 + . . scaffold1866 WUBlastX LINE_Rex-Babar 223802 223885 27 + . . scaffold1866 WUBlastX LINE_CR1 223858 224175 40 + . . scaffold1866 WUBlastX LINE_CR1 223930 224184 64 + . . scaffold1866 WUBlastX LINE_CR1-L2 224171 224557 158 + . . scaffold1866 WUBlastX LINE_CR1-L2 224267 224557 172 + . . scaffold1866 WUBlastX LINE_I 224279 224623 59 + . . scaffold1866 WUBlastX LINE_L2 224610 225188 64 + . . scaffold1866 WUBlastX LINE_CR1-L2 224943 225191 86 + . . scaffold1866 WUBlastX LINE_CR1 225114 225218 29 + . . scaffold1866 TRF Tandem_Repeat 225419 225451 66 + . . scaffold1866 GLEAN promoter 228132 229131 0.990768 - . ID=CGI_10017911; scaffold1866 WUBlastX LTR_Pao 230125 230538 20 + . . scaffold1866 WUBlastX LTR_Pao 230194 231399 468 + . . scaffold1866 WUBlastX LTR_Pao 230593 231408 507 + . . scaffold1866 WUBlastX LTR_Pao 231413 232417 520 + . . scaffold1866 WUBlastX LTR_Pao 231710 232417 563 + . . scaffold1866 WUBlastX LTR_Pao 232256 232456 23 + . . scaffold1866 WUBlastX LTR_Pao 232452 235757 2705 + . . scaffold1866 GLEAN mRNA 240570 251729 0.651094 - . ID=CGI_10017912; scaffold1866 WUBlastX LINE_CR1-L2 247196 247471 94 - . . scaffold1866 WUBlastX LINE_CR1-L2 247420 247743 118 - . . scaffold1866 WUBlastX LINE_CR1-L2 247746 248012 117 - . . scaffold1866 GLEAN promoter 251730 252729 0.651094 - . ID=CGI_10017912; scaffold1866 TRF Tandem_Repeat 257999 258048 100 + . . scaffold1866 TRF Tandem_Repeat 265243 265297 92 + . . scaffold1866 TRF Tandem_Repeat 265243 265297 74 + . . scaffold1866 GLEAN promoter 273482 274481 1 + . ID=CGI_10017913; scaffold1866 GLEAN mRNA 274482 282160 1 + . ID=CGI_10017913; scaffold1866 GLEAN mRNA 282227 282919 0.592536 - . ID=CGI_10017914; scaffold1866 GLEAN promoter 282920 283919 0.592536 - . ID=CGI_10017914; scaffold1866 GLEAN mRNA 285967 286518 0.964532 - . ID=CGI_10017915; scaffold1866 GLEAN promoter 286519 287518 0.964532 - . ID=CGI_10017915; scaffold1866 GLEAN promoter 291470 292469 0.999938 + . ID=CGI_10017916; scaffold1866 GLEAN mRNA 292470 313994 0.999938 + . ID=CGI_10017916; scaffold1866 GLEAN mRNA 300804 301454 0.989551 - . ID=CGI_10017917; scaffold1866 GLEAN promoter 301455 302454 0.989551 - . ID=CGI_10017917; scaffold1866 GLEAN mRNA 331269 332510 0.64723 - . ID=CGI_10017918; scaffold1866 GLEAN promoter 332511 333510 0.64723 - . ID=CGI_10017918; scaffold1866 GLEAN mRNA 332542 344236 0.831878 - . ID=CGI_10017919; scaffold1866 GLEAN promoter 344237 345236 0.831878 - . ID=CGI_10017919; scaffold1866 GLEAN promoter 355535 356534 0.999259 + . ID=CGI_10017920; scaffold1866 GLEAN mRNA 356535 362725 0.999259 + . ID=CGI_10017920; scaffold1866 GLEAN mRNA 363745 396506 0.999676 - . ID=CGI_10017921; scaffold1866 TRF Tandem_Repeat 394916 394969 108 + . . scaffold1866 GLEAN promoter 396507 397506 0.999676 - . ID=CGI_10017921; scaffold1866 GLEAN promoter 416067 417066 0.999647 + . ID=CGI_10017922; scaffold1866 GLEAN mRNA 417067 421692 0.999647 + . ID=CGI_10017922; scaffold1866 TRF Tandem_Repeat 427322 428222 1402 + . . scaffold1866 GLEAN mRNA 430421 436487 0.999949 - . ID=CGI_10017923; scaffold1866 GLEAN promoter 436488 437487 0.999949 - . ID=CGI_10017923; scaffold1866 GLEAN mRNA 438634 439875 0.499725 - . ID=CGI_10017924; scaffold1866 TRF Tandem_Repeat 439237 439271 70 + . . scaffold1866 GLEAN promoter 439486 440485 1 + . ID=CGI_10017925; scaffold1866 GLEAN promoter 439876 440875 0.499725 - . ID=CGI_10017924; scaffold1866 GLEAN mRNA 440486 445402 1 + . ID=CGI_10017925; scaffold1866 GLEAN promoter 451367 452366 1 + . ID=CGI_10017926; scaffold1866 GLEAN mRNA 452367 456085 1 + . ID=CGI_10017926; scaffold1866 TRF Tandem_Repeat 453663 453721 118 + . . scaffold1866 TRF Tandem_Repeat 463010 463058 89 + . . scaffold1866 TRF Tandem_Repeat 463948 464005 107 + . . scaffold1866 TRF Tandem_Repeat 465157 465205 98 + . . scaffold1866 TRF Tandem_Repeat 468354 468409 112 + . . scaffold1866 TRF Tandem_Repeat 469429 469477 75 + . . scaffold1866 WUBlastX LINE_RTE-X 470008 470112 23 - . . scaffold1866 WUBlastX LINE_RTE-X 470041 470112 41 - . . scaffold1866 WUBlastX LINE_RTE-X 470079 470198 30 - . . scaffold1866 WUBlastX LINE_RTE-X 470588 470845 53 - . . scaffold1866 WUBlastX LINE_RTE-X 470862 470948 36 - . . scaffold1866 WUBlastX LINE_RTE-BovB 472051 472299 157 - . . scaffold1866 WUBlastX LINE_RTE-BovB 472299 472934 130 - . . scaffold1866 WUBlastX LINE_RTE-BovB 472841 473047 85 - . . scaffold1866 WUBlastX LINE_RTE-BovB 472961 473152 51 - . . scaffold1866 TRF Tandem_Repeat 480650 480685 72 + . . scaffold1866 GLEAN mRNA 481079 482485 0.999983 - . ID=CGI_10017927; scaffold1866 GLEAN promoter 482486 483485 0.999983 - . ID=CGI_10017927; scaffold1866 WUBlastX LINE_RTE-X 483837 484112 140 - . . scaffold1866 WUBlastX LINE_RTE-X 484046 484825 175 - . . scaffold1866 WUBlastX LINE_RTE-X 484127 484762 285 - . . scaffold1866 TRF Tandem_Repeat 487817 487867 102 + . . scaffold1866 TRF Tandem_Repeat 502961 503049 115 + . . scaffold1866 WUBlastX DNA_Harbinger 504887 505066 52 - . . scaffold1866 TRF Tandem_Repeat 505363 505408 92 + . . scaffold1866 TRF Tandem_Repeat 506685 506908 416 + . . scaffold1866 TRF Tandem_Repeat 511345 511387 86 + . . scaffold1866 TRF Tandem_Repeat 511519 511555 74 + . . scaffold1866 GLEAN mRNA 514813 525313 0.879129 - . ID=CGI_10017928; scaffold1866 TRF Tandem_Repeat 516108 516260 234 + . . scaffold1866 TRF Tandem_Repeat 518377 518407 62 + . . scaffold1866 TRF Tandem_Repeat 518407 518446 80 + . . scaffold1866 TRF Tandem_Repeat 518556 518641 136 + . . scaffold1866 TRF Tandem_Repeat 519292 519327 72 + . . scaffold1866 GLEAN promoter 525314 525943 0.879129 - . ID=CGI_10017928; scaffold1867 GLEAN mRNA 6609 38739 0.498633 - . ID=CGI_10006442; scaffold1867 GLEAN promoter 11699 12698 1 + . ID=CGI_10006443; scaffold1867 GLEAN mRNA 12699 16202 1 + . ID=CGI_10006443; scaffold1867 GLEAN promoter 19244 20243 1 + . ID=CGI_10006444; scaffold1867 GLEAN mRNA 20244 23042 1 + . ID=CGI_10006444; scaffold1867 TRF Tandem_Repeat 23584 23625 84 + . . scaffold1867 GLEAN promoter 38740 39739 0.498633 - . ID=CGI_10006442; scaffold1867 TRF Tandem_Repeat 39990 40225 445 + . . scaffold1867 TRF Tandem_Repeat 41177 41481 542 + . . scaffold1867 TRF Tandem_Repeat 41961 42157 241 + . . scaffold1867 TRF Tandem_Repeat 41970 42157 268 + . . scaffold1867 WUBlastX LINE_CR1 44547 44780 37 - . . scaffold1867 WUBlastX LINE_L2 44613 44774 88 - . . scaffold1867 WUBlastX LINE_CR1-L2 44771 44926 21 - . . scaffold1867 WUBlastX LINE_CR1-L2 44783 44890 53 - . . scaffold1867 WUBlastX LINE_CR1-L2 44908 45084 20 - . . scaffold1867 WUBlastX LINE_L2 45032 45478 45 - . . scaffold1867 WUBlastX LINE_L2 45122 45472 142 - . . scaffold1867 WUBlastX LINE_L2 45484 45630 36 - . . scaffold1867 GLEAN mRNA 47816 83289 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 52432 53503 1451 + . . scaffold1867 TRF Tandem_Repeat 52432 53503 1307 + . . scaffold1867 TRF Tandem_Repeat 54031 54358 512 + . . scaffold1867 TRF Tandem_Repeat 60234 60296 126 + . . scaffold1867 TRF Tandem_Repeat 73390 73421 64 + . . scaffold1867 TRF Tandem_Repeat 75512 75592 162 + . . scaffold1867 TRF Tandem_Repeat 77484 77516 66 + . . scaffold1867 GLEAN promoter 83290 84289 0.805639 - . ID=CGI_10006445; scaffold1867 TRF Tandem_Repeat 87696 87759 101 + . . scaffold1867 GLEAN promoter 101678 102677 0.989687 + . ID=CGI_10006446; scaffold1867 GLEAN mRNA 102678 111179 0.989687 + . ID=CGI_10006446; scaffold1867 TRF Tandem_Repeat 103225 103316 112 + . . scaffold1867 WUBlastX DNA_Kolobok-Hyd 105219 105260 30 + . . scaffold1867 WUBlastX DNA_Kolobok-Hyd 105528 106283 84 + . . scaffold1867 WUBlastX DNA_Kolobok-Hyd 106707 106868 21 + . . scaffold1867 TRF Tandem_Repeat 112559 112592 52 + . . scaffold1867 TRF Tandem_Repeat 151049 151646 1038 + . . scaffold1868 GLEAN promoter 1 519 0.883452 + . ID=CGI_10007980; scaffold1868 GLEAN mRNA 520 14224 0.883452 + . ID=CGI_10007980; scaffold1868 TRF Tandem_Repeat 4297 4328 64 + . . scaffold1868 TRF Tandem_Repeat 4805 4837 66 + . . scaffold1868 TRF Tandem_Repeat 11216 11241 52 + . . scaffold1868 TRF Tandem_Repeat 30990 31030 55 + . . scaffold1868 GLEAN promoter 35304 36303 0.326951 + . ID=CGI_10007981; scaffold1868 GLEAN mRNA 36304 57650 0.326951 + . ID=CGI_10007981; scaffold1868 TRF Tandem_Repeat 37404 37550 114 + . . scaffold1868 TRF Tandem_Repeat 40736 40767 64 + . . scaffold1868 TRF Tandem_Repeat 44882 44920 78 + . . scaffold1868 TRF Tandem_Repeat 60594 60722 249 + . . scaffold1868 TRF Tandem_Repeat 63145 63268 122 + . . scaffold1868 TRF Tandem_Repeat 63522 63610 65 + . . scaffold1868 TRF Tandem_Repeat 64057 64443 384 + . . scaffold1868 TRF Tandem_Repeat 64057 64443 429 + . . scaffold1868 TRF Tandem_Repeat 64058 64443 343 + . . scaffold1868 TRF Tandem_Repeat 64063 64443 357 + . . scaffold1868 TRF Tandem_Repeat 64469 64510 84 + . . scaffold1868 TRF Tandem_Repeat 66734 66993 294 + . . scaffold1868 TRF Tandem_Repeat 66734 66973 281 + . . scaffold1868 GLEAN promoter 75119 76118 0.946192 + . ID=CGI_10007982; scaffold1868 GLEAN mRNA 76119 79054 0.946192 + . ID=CGI_10007982; scaffold1868 TRF Tandem_Repeat 85857 85915 118 + . . scaffold1868 WUBlastX LTR_Gypsy 87006 87404 79 + . . scaffold1868 WUBlastX LTR_ERV1 87400 87594 55 + . . scaffold1868 WUBlastX LTR_Gypsy 87603 88109 48 + . . scaffold1868 WUBlastX LTR_Gypsy 87699 88208 94 + . . scaffold1868 WUBlastX LTR_Gypsy-Cigr 87804 89918 1336 + . . scaffold1868 WUBlastX LTR_Gypsy 88173 91562 2352 + . . scaffold1868 TRF Tandem_Repeat 100349 100441 168 + . . scaffold1868 TRF Tandem_Repeat 112687 112735 89 + . . scaffold1868 TRF Tandem_Repeat 126146 126178 66 + . . scaffold1868 TRF Tandem_Repeat 132693 132746 99 + . . scaffold1868 TRF Tandem_Repeat 135525 135574 100 + . . scaffold1868 WUBlastX DNA_MuDR 138423 138482 33 + . . scaffold1868 WUBlastX DNA_MuDR 138478 139212 177 + . . scaffold1868 TRF Tandem_Repeat 141104 141163 120 + . . scaffold1868 TRF Tandem_Repeat 141163 141203 82 + . . scaffold1868 TRF Tandem_Repeat 141215 141260 60 + . . scaffold1868 GLEAN mRNA 144442 144990 0.993839 - . ID=CGI_10007983; scaffold1868 WUBlastX LINE_RTE-X 144493 144900 53 - . . scaffold1868 GLEAN promoter 144991 145990 0.993839 - . ID=CGI_10007983; scaffold1868 WUBlastX LINE_CR1 147688 147741 20 + . . scaffold1868 WUBlastX LINE_CR1 147810 148427 35 + . . scaffold1868 WUBlastX LINE_RTE-X 147987 148484 223 + . . scaffold1868 WUBlastX LINE_RTE-X 148465 149577 376 + . . scaffold1868 GLEAN promoter 150292 151291 1 + . ID=CGI_10007984; scaffold1868 GLEAN mRNA 151292 152095 1 + . ID=CGI_10007984; scaffold1868 WUBlastX LTR_DIRS 151403 152032 132 + . . scaffold1868 WUBlastX LTR_DIRS 152157 154079 966 + . . scaffold1868 WUBlastX LTR_DIRS 154461 155411 471 + . . scaffold1868 WUBlastX LINE_L1 156022 156438 53 + . . scaffold1868 WUBlastX LINE_L1 156106 156438 56 + . . scaffold1868 WUBlastX LINE_L1 156163 156414 70 + . . scaffold1868 WUBlastX LINE_L1-Tx1 156208 156438 124 + . . scaffold1868 WUBlastX LINE_L1-Tx1 156414 156716 67 + . . scaffold1868 WUBlastX LINE_L1-Tx1 156417 156650 74 + . . scaffold1868 TRF Tandem_Repeat 157122 157241 92 + . . scaffold1868 WUBlastX LINE_L2 163051 163608 152 + . . scaffold1868 TRF Tandem_Repeat 166373 166401 58 + . . scaffold1868 GLEAN mRNA 166977 179463 0.984982 - . ID=CGI_10007985; scaffold1868 WUBlastX LINE_RTE-X 168873 168995 42 + . . scaffold1868 WUBlastX LINE_RTE-X 168900 169007 44 + . . scaffold1868 WUBlastX LINE_RTE-X 169015 169434 38 + . . scaffold1868 WUBlastX LINE_RTE-X 169431 169607 25 + . . scaffold1868 TRF Tandem_Repeat 173056 173179 214 + . . scaffold1868 TRF Tandem_Repeat 173441 173499 118 + . . scaffold1868 GLEAN promoter 179464 180463 0.984982 - . ID=CGI_10007985; scaffold1868 GLEAN mRNA 190602 196406 0.646404 - . ID=CGI_10007986; scaffold1868 GLEAN promoter 196407 197406 0.646404 - . ID=CGI_10007986; scaffold1869 GLEAN promoter 1 387 0.999993 + . ID=CGI_10009010; scaffold1869 GLEAN mRNA 388 7868 0.999993 + . ID=CGI_10009010; scaffold1869 TRF Tandem_Repeat 5311 6664 1986 + . . scaffold1869 TRF Tandem_Repeat 7316 7615 449 + . . scaffold1869 TRF Tandem_Repeat 7319 7653 410 + . . scaffold1869 GLEAN mRNA 8009 37015 0.526029 - . ID=CGI_10009011; scaffold1869 GLEAN promoter 10164 11163 0.999984 + . ID=CGI_10009012; scaffold1869 GLEAN mRNA 11164 16956 0.999984 + . ID=CGI_10009012; scaffold1869 TRF Tandem_Repeat 14903 15080 259 + . . scaffold1869 WUBlastX DNA_Sola 15390 15530 75 + . . scaffold1869 WUBlastX DNA_Sola 15493 15843 122 + . . scaffold1869 WUBlastX DNA_Sola 15544 15834 122 + . . scaffold1869 WUBlastX DNA_Sola 15890 15991 22 + . . scaffold1869 TRF Tandem_Repeat 17307 17842 822 + . . scaffold1869 WUBlastX LTR_Pao 19381 19797 39 - . . scaffold1869 TRF Tandem_Repeat 27949 28281 485 + . . scaffold1869 GLEAN promoter 37016 38015 0.526029 - . ID=CGI_10009011; scaffold1869 GLEAN mRNA 38970 48769 1 - . ID=CGI_10009013; scaffold1869 GLEAN promoter 48770 49769 1 - . ID=CGI_10009013; scaffold1869 TRF Tandem_Repeat 52480 52632 297 + . . scaffold1869 WUBlastX LINE_CR1-L2 52636 52683 29 + . . scaffold1869 WUBlastX LINE_CR1-L2 52691 52831 85 + . . scaffold1869 WUBlastX LINE_L2 53331 53579 61 + . . scaffold1869 TRF Tandem_Repeat 55306 55497 341 + . . scaffold1869 TRF Tandem_Repeat 55306 55565 373 + . . scaffold1869 TRF Tandem_Repeat 58500 58534 70 + . . scaffold1869 TRF Tandem_Repeat 60601 60660 120 + . . scaffold1869 WUBlastX LINE_RTE-X 62402 63301 54 + . . scaffold1869 WUBlastX LINE_RTE-X 63309 63452 48 + . . scaffold1869 GLEAN mRNA 65654 77187 0.938363 - . ID=CGI_10009014; scaffold1869 GLEAN promoter 76875 77874 0.999415 + . ID=CGI_10009015; scaffold1869 GLEAN promoter 77188 78187 0.938363 - . ID=CGI_10009014; scaffold1869 GLEAN mRNA 77875 88150 0.999415 + . ID=CGI_10009015; scaffold1869 TRF Tandem_Repeat 79109 79320 248 + . . scaffold1869 TRF Tandem_Repeat 79994 80471 695 + . . scaffold1869 TRF Tandem_Repeat 81095 81404 346 + . . scaffold1869 TRF Tandem_Repeat 81098 81383 518 + . . scaffold1869 TRF Tandem_Repeat 81100 81427 363 + . . scaffold1869 TRF Tandem_Repeat 81119 81305 182 + . . scaffold1869 TRF Tandem_Repeat 81176 81423 227 + . . scaffold1869 GLEAN promoter 92113 93112 0.811395 + . ID=CGI_10009016; scaffold1869 GLEAN mRNA 93113 96045 0.811395 + . ID=CGI_10009016; scaffold1869 WUBlastX LINE_L1 96453 96509 25 - . . scaffold1869 WUBlastX LINE_L1-Tx1 96737 96943 32 - . . scaffold1869 WUBlastX LINE_L1 96803 97030 21 - . . scaffold1869 WUBlastX LINE_L1-Tx1 97134 99020 794 - . . scaffold1869 TRF Tandem_Repeat 99872 99936 103 + . . scaffold1869 WUBlastX LINE_L1-Tx1 100514 101161 21 - . . scaffold1869 WUBlastX LINE_L1-Tx1 100631 101194 192 - . . scaffold1869 WUBlastX LINE_L1-Tx1 101152 101376 73 - . . scaffold1869 GLEAN promoter 103612 104611 1 + . ID=CGI_10009017; scaffold1869 GLEAN mRNA 104612 109563 1 + . ID=CGI_10009017; scaffold1869 GLEAN promoter 114118 115117 0.999743 + . ID=CGI_10009018; scaffold1869 GLEAN mRNA 115118 117552 0.999743 + . ID=CGI_10009018; scaffold1869 GLEAN mRNA 118310 118501 0.999372 - . ID=CGI_10009019; scaffold1869 GLEAN promoter 118502 119501 0.999372 - . ID=CGI_10009019; scaffold1869 GLEAN promoter 124635 125634 0.681612 + . ID=CGI_10009020; scaffold1869 GLEAN mRNA 125635 129471 0.681612 + . ID=CGI_10009020; scaffold1869 WUBlastX LINE_Zorro 131150 131284 20 + . . scaffold1869 WUBlastX LINE_L1 131184 133424 588 + . . scaffold1869 WUBlastX LINE_L1-Tx1 131190 132269 730 + . . scaffold1869 TRF Tandem_Repeat 144465 144556 96 + . . scaffold1869 TRF Tandem_Repeat 144632 144791 162 + . . scaffold1869 TRF Tandem_Repeat 145019 145112 107 + . . scaffold1869 WUBlastX DNA_TcMar-Tc1 153052 153261 121 - . . scaffold1869 WUBlastX DNA_TcMar-Tc1 153255 153713 227 - . . scaffold1869 WUBlastX DNA_TcMar-Tc1 153733 154029 48 - . . scaffold1869 TRF Tandem_Repeat 156981 157036 76 + . . scaffold1869 TRF Tandem_Repeat 158780 158813 68 + . . scaffold1869 TRF Tandem_Repeat 158815 158846 55 + . . scaffold1869 TRF Tandem_Repeat 166825 167136 396 + . . scaffold1869 TRF Tandem_Repeat 167135 167380 266 + . . scaffold1869 TRF Tandem_Repeat 167362 167430 54 + . . scaffold1869 TRF Tandem_Repeat 167417 167917 664 + . . scaffold1869 GLEAN promoter 167999 168998 1 + . ID=CGI_10009021; scaffold1869 GLEAN mRNA 168999 171022 1 + . ID=CGI_10009021; scaffold1869 GLEAN promoter 172983 173982 1 + . ID=CGI_10009022; scaffold1869 GLEAN mRNA 173983 174411 1 + . ID=CGI_10009022; scaffold1869 WUBlastX DNA_PiggyBac 175109 175303 90 + . . scaffold1869 WUBlastX DNA_PiggyBac 175139 175381 38 + . . scaffold1869 WUBlastX DNA_PiggyBac 175208 175330 79 + . . scaffold1869 WUBlastX DNA_PiggyBac 175768 175899 68 + . . scaffold1869 WUBlastX DNA_PiggyBac 176292 176405 33 + . . scaffold1869 TRF Tandem_Repeat 181713 181750 76 + . . scaffold1869 TRF Tandem_Repeat 182928 183068 222 + . . scaffold1869 GLEAN mRNA 183421 200826 0.316971 - . ID=CGI_10009023; scaffold1869 GLEAN promoter 190202 191201 0.999994 + . ID=CGI_10009024; scaffold1869 GLEAN mRNA 191202 197150 0.999994 + . ID=CGI_10009024; scaffold1869 TRF Tandem_Repeat 193385 193420 72 + . . scaffold1869 GLEAN promoter 200827 201826 0.316971 - . ID=CGI_10009023; scaffold1869 GLEAN mRNA 201078 208517 1 - . ID=CGI_10009025; scaffold1869 TRF Tandem_Repeat 203876 203907 64 + . . scaffold1869 WUBlastX LINE_L1-Tx1 205852 206475 69 - . . scaffold1869 WUBlastX LINE_L1-Tx1 205873 206334 123 - . . scaffold1869 GLEAN promoter 208518 209517 1 - . ID=CGI_10009025; scaffold1869 GLEAN mRNA 209068 210369 0.793163 - . ID=CGI_10009026; scaffold1869 TRF Tandem_Repeat 209805 209973 293 + . . scaffold1869 TRF Tandem_Repeat 209824 209954 133 + . . scaffold1869 GLEAN promoter 210370 211369 0.793163 - . ID=CGI_10009026; scaffold1869 GLEAN mRNA 210590 215596 0.9362 - . ID=CGI_10009027; scaffold1869 GLEAN promoter 215597 216596 0.9362 - . ID=CGI_10009027; scaffold1869 TRF Tandem_Repeat 217279 217311 66 + . . scaffold1869 TRF Tandem_Repeat 221098 221147 100 + . . scaffold1869 WUBlastX LINE_RTE-X 222155 222433 59 - . . scaffold1869 WUBlastX LINE_RTE-X 222167 222613 59 - . . scaffold1869 WUBlastX LINE_RTE-X 222179 222394 70 - . . scaffold1869 TRF Tandem_Repeat 222832 222910 158 + . . scaffold187 TRF Tandem_Repeat 11074 11133 66 + . . scaffold187 WUBlastX LINE_RTE-X 11153 11386 52 - . . scaffold187 WUBlastX LTR_Ngaro 14962 15327 163 + . . scaffold187 WUBlastX LTR_Ngaro 15341 15400 48 + . . scaffold187 WUBlastX LTR_Ngaro 15399 15596 86 + . . scaffold187 WUBlastX LTR_Ngaro 15402 15677 56 + . . scaffold187 WUBlastX LTR_Ngaro 15802 15927 21 + . . scaffold187 WUBlastX LTR_Ngaro 15980 16237 41 + . . scaffold187 WUBlastX LTR_Ngaro 16010 16228 48 + . . scaffold1870 WUBlastX LINE_L2 6402 8069 1105 - . . scaffold1870 WUBlastX LINE_L2 6747 8303 422 - . . scaffold1870 TRF Tandem_Repeat 10671 10708 76 + . . scaffold1870 TRF Tandem_Repeat 13230 13441 318 + . . scaffold1870 TRF Tandem_Repeat 13231 13438 238 + . . scaffold1870 TRF Tandem_Repeat 18150 18210 122 + . . scaffold1870 TRF Tandem_Repeat 18410 18434 50 + . . scaffold1870 TRF Tandem_Repeat 20521 20600 151 + . . scaffold1870 TRF Tandem_Repeat 21092 21182 168 + . . scaffold1870 GLEAN promoter 25754 26753 0.928104 + . ID=CGI_10013178; scaffold1870 GLEAN mRNA 26754 27842 0.928104 + . ID=CGI_10013178; scaffold1870 GLEAN promoter 35308 36307 0.616085 + . ID=CGI_10013179; scaffold1870 GLEAN mRNA 36308 37426 0.616085 + . ID=CGI_10013179; scaffold1870 GLEAN promoter 64200 65199 0.328139 + . ID=CGI_10013180; scaffold1870 GLEAN mRNA 65200 67095 0.328139 + . ID=CGI_10013180; scaffold1870 TRF Tandem_Repeat 71070 71103 68 + . . scaffold1870 WUBlastX LINE_RTE-X 75277 75924 179 - . . scaffold1870 WUBlastX LINE_RTE-X 75974 76219 113 - . . scaffold1870 WUBlastX LINE_RTE-X 76022 76330 78 - . . scaffold1870 WUBlastX LINE_RTE-X 76270 76641 76 - . . scaffold1870 TRF Tandem_Repeat 79607 80298 1213 + . . scaffold1870 TRF Tandem_Repeat 81666 81694 58 + . . scaffold1870 GLEAN promoter 83040 84039 0.590785 + . ID=CGI_10013181; scaffold1870 GLEAN mRNA 84040 94430 0.590785 + . ID=CGI_10013181; scaffold1870 TRF Tandem_Repeat 90233 90271 60 + . . scaffold1870 TRF Tandem_Repeat 90342 90366 50 + . . scaffold1870 TRF Tandem_Repeat 92643 93045 572 + . . scaffold1870 GLEAN mRNA 96078 123718 0.283709 - . ID=CGI_10013182; scaffold1870 WUBlastX LINE_L1 97026 97520 22 - . . scaffold1870 TRF Tandem_Repeat 98218 98338 138 + . . scaffold1870 WUBlastX LINE_L1-Tx1 106335 106598 22 - . . scaffold1870 WUBlastX LINE_RTE-X 108535 108690 20 + . . scaffold1870 WUBlastX LINE_RTE-X 109683 110138 79 + . . scaffold1870 WUBlastX LINE_RTE-X 109821 110237 55 + . . scaffold1870 WUBlastX LINE_RTE-X 110284 110415 57 + . . scaffold1870 WUBlastX LINE_RTE-X 110302 110475 28 + . . scaffold1870 GLEAN promoter 120864 121863 0.738053 + . ID=CGI_10013183; scaffold1870 GLEAN mRNA 121864 154842 0.738053 + . ID=CGI_10013183; scaffold1870 GLEAN promoter 123719 124718 0.283709 - . ID=CGI_10013182; scaffold1870 TRF Tandem_Repeat 126146 126202 107 + . . scaffold1870 TRF Tandem_Repeat 128288 128748 537 + . . scaffold1870 TRF Tandem_Repeat 130101 130371 436 + . . scaffold1870 TRF Tandem_Repeat 131673 132041 616 + . . scaffold1870 GLEAN mRNA 157126 168246 0.612366 - . ID=CGI_10013184; scaffold1870 TRF Tandem_Repeat 161576 161607 64 + . . scaffold1870 GLEAN promoter 168247 169246 0.612366 - . ID=CGI_10013184; scaffold1870 GLEAN mRNA 171421 190977 0.639613 - . ID=CGI_10013185; scaffold1870 TRF Tandem_Repeat 183696 183749 108 + . . scaffold1870 GLEAN promoter 190978 191977 0.639613 - . ID=CGI_10013185; scaffold1870 GLEAN promoter 192062 193061 0.440748 + . ID=CGI_10013186; scaffold1870 GLEAN mRNA 193062 240883 0.440748 + . ID=CGI_10013186; scaffold1870 TRF Tandem_Repeat 211958 211998 82 + . . scaffold1870 TRF Tandem_Repeat 213920 213970 93 + . . scaffold1870 TRF Tandem_Repeat 225803 225942 271 + . . scaffold1870 GLEAN mRNA 245218 249893 1 - . ID=CGI_10013187; scaffold1870 TRF Tandem_Repeat 247074 247499 647 + . . scaffold1870 GLEAN promoter 248950 249949 1 + . ID=CGI_10013188; scaffold1870 GLEAN promoter 249894 250893 1 - . ID=CGI_10013187; scaffold1870 GLEAN mRNA 249950 251966 1 + . ID=CGI_10013188; scaffold1870 TRF Tandem_Repeat 250666 250917 164 + . . scaffold1870 TRF Tandem_Repeat 250720 250921 154 + . . scaffold1870 GLEAN mRNA 252518 259633 1 - . ID=CGI_10013189; scaffold1870 TRF Tandem_Repeat 254960 255282 407 + . . scaffold1870 TRF Tandem_Repeat 257204 257249 92 + . . scaffold1870 GLEAN promoter 259634 260633 1 - . ID=CGI_10013189; scaffold1870 TRF Tandem_Repeat 259959 260011 106 + . . scaffold1870 TRF Tandem_Repeat 261025 261065 82 + . . scaffold1870 TRF Tandem_Repeat 262182 262418 359 + . . scaffold1870 GLEAN mRNA 262486 273006 0.997644 - . ID=CGI_10013190; scaffold1870 TRF Tandem_Repeat 264788 264915 76 + . . scaffold1870 GLEAN promoter 273007 274006 0.997644 - . ID=CGI_10013190; scaffold1870 TRF Tandem_Repeat 274953 275008 112 + . . scaffold1870 WUBlastX LINE_Penelope 300387 300509 39 + . . scaffold1870 WUBlastX LINE_Penelope 300500 300799 87 + . . scaffold1870 TRF Tandem_Repeat 302613 304317 2289 + . . scaffold1870 TRF Tandem_Repeat 304479 304524 67 + . . scaffold1870 TRF Tandem_Repeat 308470 308557 144 + . . scaffold1870 TRF Tandem_Repeat 309846 310551 1114 + . . scaffold1870 GLEAN mRNA 314389 319327 0.889923 - . ID=CGI_10013191; scaffold1870 TRF Tandem_Repeat 316025 316170 222 + . . scaffold1870 GLEAN promoter 319328 320327 0.889923 - . ID=CGI_10013191; scaffold1870 WUBlastX LTR_DIRS? 330412 330717 81 - . . scaffold1870 TRF Tandem_Repeat 331433 331486 64 + . . scaffold1870 TRF Tandem_Repeat 331433 331486 69 + . . scaffold1870 GLEAN mRNA 332737 333609 1 - . ID=CGI_10013192; scaffold1870 WUBlastX LTR_Gypsy 333298 333420 20 - . . scaffold1870 GLEAN promoter 333610 334609 1 - . ID=CGI_10013192; scaffold1870 WUBlastX LTR_DIRS 333718 333807 22 - . . scaffold1870 WUBlastX LTR_DIRS 333933 334877 184 - . . scaffold1870 WUBlastX LTR_DIRS 334104 334964 448 - . . scaffold1870 WUBlastX LTR_DIRS 334167 335105 245 - . . scaffold1870 WUBlastX LTR_DIRS 335053 335667 126 - . . scaffold1871 TRF Tandem_Repeat 67 988 1121 + . . scaffold1871 GLEAN mRNA 2307 41384 0.975361 - . ID=CGI_10007352; scaffold1871 TRF Tandem_Repeat 5331 5360 60 + . . scaffold1871 TRF Tandem_Repeat 9186 9226 82 + . . scaffold1871 TRF Tandem_Repeat 15324 15382 102 + . . scaffold1871 TRF Tandem_Repeat 37395 38009 575 + . . scaffold1871 TRF Tandem_Repeat 37417 38006 294 + . . scaffold1871 TRF Tandem_Repeat 37587 38009 328 + . . scaffold1871 TRF Tandem_Repeat 38006 38376 271 + . . scaffold1871 TRF Tandem_Repeat 38022 38376 240 + . . scaffold1871 TRF Tandem_Repeat 38122 38376 214 + . . scaffold1871 GLEAN promoter 41385 42384 0.975361 - . ID=CGI_10007352; scaffold1871 GLEAN mRNA 43442 54161 0.982597 - . ID=CGI_10007353; scaffold1871 TRF Tandem_Repeat 48758 48790 66 + . . scaffold1871 GLEAN promoter 54162 55161 0.982597 - . ID=CGI_10007353; scaffold1871 GLEAN promoter 54197 55196 0.99324 + . ID=CGI_10007354; scaffold1871 GLEAN mRNA 55197 86998 0.99324 + . ID=CGI_10007354; scaffold1871 TRF Tandem_Repeat 62580 62629 91 + . . scaffold1871 TRF Tandem_Repeat 74316 74552 402 + . . scaffold1871 TRF Tandem_Repeat 84116 84176 104 + . . scaffold1871 GLEAN mRNA 89998 92153 1 - . ID=CGI_10007355; scaffold1871 GLEAN promoter 92154 93153 1 - . ID=CGI_10007355; scaffold1871 TRF Tandem_Repeat 92398 92700 516 + . . scaffold1871 GLEAN promoter 114037 115036 0.996228 + . ID=CGI_10007356; scaffold1871 GLEAN promoter 114557 115556 0.999557 + . ID=CGI_10007357; scaffold1871 GLEAN mRNA 115037 115285 0.996228 + . ID=CGI_10007356; scaffold1871 GLEAN mRNA 115557 136782 0.999557 + . ID=CGI_10007357; scaffold1871 TRF Tandem_Repeat 119269 119365 106 + . . scaffold1871 WUBlastX LINE_RTE-X 140050 141630 392 - . . scaffold1871 WUBlastX LINE_RTE-X 140779 141900 674 - . . scaffold1871 WUBlastX LINE_L2 141756 142205 49 - . . scaffold1871 GLEAN promoter 142035 143034 0.999675 + . ID=CGI_10007358; scaffold1871 TRF Tandem_Repeat 142559 142597 78 + . . scaffold1871 GLEAN mRNA 143035 146102 0.999675 + . ID=CGI_10007358; scaffold1871 GLEAN mRNA 152271 161907 0.999998 - . ID=CGI_10007359; scaffold1871 TRF Tandem_Repeat 160696 160730 70 + . . scaffold1871 GLEAN promoter 161908 162907 0.999998 - . ID=CGI_10007359; scaffold1871 GLEAN promoter 162599 163598 0.999957 + . ID=CGI_10007360; scaffold1871 GLEAN mRNA 163599 168174 0.999957 + . ID=CGI_10007360; scaffold1871 TRF Tandem_Repeat 170390 170492 197 + . . scaffold1871 TRF Tandem_Repeat 170734 170857 230 + . . scaffold1871 TRF Tandem_Repeat 172238 172368 244 + . . scaffold1872 GLEAN promoter 1 1 1 + . ID=CGI_10007179; scaffold1872 GLEAN mRNA 2 6618 1 + . ID=CGI_10007179; scaffold1872 GLEAN mRNA 7790 9989 1 - . ID=CGI_10007180; scaffold1872 GLEAN promoter 9990 10989 1 - . ID=CGI_10007180; scaffold1872 TRF Tandem_Repeat 11080 11117 76 + . . scaffold1872 GLEAN promoter 15235 16234 0.778075 + . ID=CGI_10007181; scaffold1872 GLEAN mRNA 16235 46149 0.778075 + . ID=CGI_10007181; scaffold1872 TRF Tandem_Repeat 36109 36177 56 + . . scaffold1872 TRF Tandem_Repeat 41770 42007 146 + . . scaffold1872 GLEAN mRNA 48366 63556 0.997888 - . ID=CGI_10007182; scaffold1872 TRF Tandem_Repeat 51968 52305 257 + . . scaffold1872 TRF Tandem_Repeat 52053 52462 222 + . . scaffold1872 GLEAN promoter 63557 64556 0.997888 - . ID=CGI_10007182; scaffold1872 WUBlastX LTR_Gypsy 64696 65040 38 + . . scaffold1872 WUBlastX LTR_Gypsy 64951 65154 21 + . . scaffold1872 WUBlastX LINE_Jockey 66193 66675 54 + . . scaffold1872 WUBlastX LINE_RTE-X 66280 67899 837 + . . scaffold1872 TRF Tandem_Repeat 68071 68095 50 + . . scaffold1872 GLEAN promoter 69696 70695 1 + . ID=CGI_10007183; scaffold1872 GLEAN mRNA 70696 76626 1 + . ID=CGI_10007183; scaffold1872 WUBlastX LINE_RTE-X 77759 78025 31 - . . scaffold1872 WUBlastX LINE_RTE-X 77861 78064 55 - . . scaffold1872 GLEAN promoter 80130 81129 0.586599 + . ID=CGI_10007184; scaffold1872 GLEAN mRNA 81130 113506 0.586599 + . ID=CGI_10007184; scaffold1872 TRF Tandem_Repeat 85425 86331 940 + . . scaffold1872 TRF Tandem_Repeat 87627 87666 62 + . . scaffold1872 TRF Tandem_Repeat 89560 89857 207 + . . scaffold1872 TRF Tandem_Repeat 89651 89867 226 + . . scaffold1872 TRF Tandem_Repeat 92139 92189 102 + . . scaffold1872 WUBlastX LINE_RTE-X 97596 98108 41 - . . scaffold1872 WUBlastX LINE_RTE-X 97629 97961 99 - . . scaffold1872 TRF Tandem_Repeat 101176 101206 62 + . . scaffold1872 TRF Tandem_Repeat 109485 109927 590 + . . scaffold1872 TRF Tandem_Repeat 109485 109927 583 + . . scaffold1872 TRF Tandem_Repeat 113121 113232 142 + . . scaffold1872 TRF Tandem_Repeat 113121 113232 122 + . . scaffold1872 GLEAN mRNA 113863 118622 0.651133 - . ID=CGI_10007185; scaffold1872 TRF Tandem_Repeat 117786 117823 76 + . . scaffold1872 GLEAN promoter 118623 119622 0.651133 - . ID=CGI_10007185; scaffold1872 TRF Tandem_Repeat 120172 120226 101 + . . scaffold1872 TRF Tandem_Repeat 120413 120519 128 + . . scaffold1872 TRF Tandem_Repeat 120829 120859 62 + . . scaffold1872 TRF Tandem_Repeat 121699 121732 68 + . . scaffold1872 TRF Tandem_Repeat 121786 121827 84 + . . scaffold1872 TRF Tandem_Repeat 122072 122207 184 + . . scaffold1872 TRF Tandem_Repeat 122072 122207 156 + . . scaffold1872 GLEAN mRNA 125760 135783 0.991823 - . ID=CGI_10007186; scaffold1872 TRF Tandem_Repeat 134956 134994 78 + . . scaffold1872 GLEAN promoter 135784 136783 0.991823 - . ID=CGI_10007186; scaffold1872 TRF Tandem_Repeat 136783 136819 74 + . . scaffold1872 GLEAN promoter 138176 139175 1 + . ID=CGI_10007187; scaffold1872 GLEAN mRNA 139176 141737 1 + . ID=CGI_10007187; scaffold1872 GLEAN promoter 141927 142926 0.999297 + . ID=CGI_10007188; scaffold1872 GLEAN mRNA 142927 167041 0.999297 + . ID=CGI_10007188; scaffold1872 TRF Tandem_Repeat 160571 160644 121 + . . scaffold1872 TRF Tandem_Repeat 162515 162629 69 + . . scaffold1872 TRF Tandem_Repeat 169729 169757 58 + . . scaffold1873 TRF Tandem_Repeat 2035 2309 358 + . . scaffold1873 TRF Tandem_Repeat 2035 2309 347 + . . scaffold1873 TRF Tandem_Repeat 2037 2287 277 + . . scaffold1873 TRF Tandem_Repeat 31946 31976 62 + . . scaffold1873 GLEAN promoter 41995 42994 0.656652 + . ID=CGI_10009291; scaffold1873 GLEAN mRNA 42995 66497 0.656652 + . ID=CGI_10009291; scaffold1873 TRF Tandem_Repeat 50957 50981 50 + . . scaffold1873 WUBlastX LINE_L2 54381 54941 26 - . . scaffold1873 WUBlastX RC_Helitron 54964 55191 59 - . . scaffold1873 WUBlastX RC_Helitron 55187 56488 785 - . . scaffold1873 WUBlastX RC_Helitron 56072 56575 196 - . . scaffold1873 WUBlastX RC_Helitron 56649 57350 276 - . . scaffold1873 WUBlastX RC_Helitron 57353 58015 437 - . . scaffold1873 WUBlastX RC_Helitron 57947 58579 312 - . . scaffold1873 WUBlastX DNA_Helitron 58839 58892 20 - . . scaffold1873 WUBlastX LINE_L1-Tx1 64736 64792 28 + . . scaffold1873 WUBlastX LINE_L1-Tx1 64771 65220 103 + . . scaffold1873 WUBlastX LINE_L1-Tx1 64858 65385 198 + . . scaffold1873 GLEAN promoter 65556 66555 0.967714 + . ID=CGI_10009292; scaffold1873 GLEAN mRNA 66556 75534 0.967714 + . ID=CGI_10009292; scaffold1873 TRF Tandem_Repeat 71983 72069 111 + . . scaffold1873 TRF Tandem_Repeat 71996 72098 84 + . . scaffold1873 TRF Tandem_Repeat 72470 72508 78 + . . scaffold1873 WUBlastX LINE_L1-Tx1 72815 73003 58 - . . scaffold1873 TRF Tandem_Repeat 85264 85327 80 + . . scaffold1873 GLEAN promoter 85378 86377 1 + . ID=CGI_10009293; scaffold1873 GLEAN mRNA 86378 87316 1 + . ID=CGI_10009293; scaffold1873 GLEAN mRNA 89510 93704 0.999235 - . ID=CGI_10009294; scaffold1873 GLEAN promoter 93705 94704 0.999235 - . ID=CGI_10009294; scaffold1873 GLEAN promoter 94341 95340 0.99926 + . ID=CGI_10009295; scaffold1873 TRF Tandem_Repeat 95026 95086 122 + . . scaffold1873 GLEAN mRNA 95341 98119 0.99926 + . ID=CGI_10009295; scaffold1873 GLEAN mRNA 98306 98875 0.998682 - . ID=CGI_10009296; scaffold1873 GLEAN promoter 98876 99875 0.998682 - . ID=CGI_10009296; scaffold1873 TRF Tandem_Repeat 113968 114026 118 + . . scaffold1873 GLEAN promoter 123074 124073 0.998183 + . ID=CGI_10009297; scaffold1873 GLEAN mRNA 124074 130180 0.998183 + . ID=CGI_10009297; scaffold1873 GLEAN mRNA 142396 155516 0.982082 - . ID=CGI_10009298; scaffold1873 GLEAN promoter 155517 156516 0.982082 - . ID=CGI_10009298; scaffold1873 WUBlastX LINE_RTE-X 159221 159994 214 - . . scaffold1873 GLEAN promoter 175185 176184 0.487855 + . ID=CGI_10009300; scaffold1873 GLEAN mRNA 176185 193037 0.487855 + . ID=CGI_10009300; scaffold1873 WUBlastX LINE_RTE-X 179249 179443 45 - . . scaffold1873 WUBlastX LINE_RTE-X 179460 179558 29 - . . scaffold1873 TRF Tandem_Repeat 184159 184219 122 + . . scaffold1873 TRF Tandem_Repeat 204410 204474 130 + . . scaffold1873 GLEAN mRNA 207235 214009 0.994697 - . ID=CGI_10009301; scaffold1873 GLEAN promoter 214010 215009 0.994697 - . ID=CGI_10009301; scaffold1873 WUBlastX DNA_Harbinger 226671 226886 84 + . . scaffold1874 GLEAN mRNA 382 25053 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 2403 2748 629 + . . scaffold1874 TRF Tandem_Repeat 4300 4528 422 + . . scaffold1874 TRF Tandem_Repeat 9418 9758 150 + . . scaffold1874 TRF Tandem_Repeat 9853 10017 106 + . . scaffold1874 TRF Tandem_Repeat 11296 11437 239 + . . scaffold1874 TRF Tandem_Repeat 13195 13319 153 + . . scaffold1874 TRF Tandem_Repeat 13866 13993 91 + . . scaffold1874 TRF Tandem_Repeat 16527 17025 353 + . . scaffold1874 TRF Tandem_Repeat 16609 16874 433 + . . scaffold1874 TRF Tandem_Repeat 21014 21622 575 + . . scaffold1874 TRF Tandem_Repeat 23706 23788 148 + . . scaffold1874 GLEAN promoter 23932 24931 0.799155 + . ID=CGI_10011918; scaffold1874 TRF Tandem_Repeat 24398 24558 250 + . . scaffold1874 TRF Tandem_Repeat 24567 24757 231 + . . scaffold1874 GLEAN mRNA 24932 39177 0.799155 + . ID=CGI_10011918; scaffold1874 GLEAN promoter 25054 26053 0.906367 - . ID=CGI_10011917; scaffold1874 TRF Tandem_Repeat 28893 29100 93 + . . scaffold1874 TRF Tandem_Repeat 28963 29490 819 + . . scaffold1874 TRF Tandem_Repeat 29480 29584 70 + . . scaffold1874 TRF Tandem_Repeat 29490 29694 311 + . . scaffold1874 TRF Tandem_Repeat 30008 30230 365 + . . scaffold1874 TRF Tandem_Repeat 30697 31148 705 + . . scaffold1874 TRF Tandem_Repeat 30707 31127 133 + . . scaffold1874 TRF Tandem_Repeat 30733 31140 283 + . . scaffold1874 TRF Tandem_Repeat 31038 31111 63 + . . scaffold1874 TRF Tandem_Repeat 32836 32896 122 + . . scaffold1874 TRF Tandem_Repeat 34120 34216 135 + . . scaffold1874 TRF Tandem_Repeat 34252 34373 109 + . . scaffold1874 TRF Tandem_Repeat 35442 36090 678 + . . scaffold1874 TRF Tandem_Repeat 35442 36090 745 + . . scaffold1874 TRF Tandem_Repeat 39158 39392 355 + . . scaffold1874 GLEAN mRNA 44122 50689 0.999675 - . ID=CGI_10011919; scaffold1874 TRF Tandem_Repeat 44418 44544 209 + . . scaffold1874 TRF Tandem_Repeat 48890 49019 233 + . . scaffold1874 TRF Tandem_Repeat 49939 49993 110 + . . scaffold1874 GLEAN promoter 50690 51689 0.999675 - . ID=CGI_10011919; scaffold1874 TRF Tandem_Repeat 51593 51630 76 + . . scaffold1874 GLEAN promoter 62541 63540 0.999676 + . ID=CGI_10011920; scaffold1874 GLEAN mRNA 63541 73825 0.999676 + . ID=CGI_10011920; scaffold1874 TRF Tandem_Repeat 69662 70532 1403 + . . scaffold1874 TRF Tandem_Repeat 70954 71093 208 + . . scaffold1874 GLEAN promoter 74006 75005 0.84091 + . ID=CGI_10011921; scaffold1874 TRF Tandem_Repeat 74743 78048 4142 + . . scaffold1874 TRF Tandem_Repeat 74746 78048 4163 + . . scaffold1874 GLEAN mRNA 75006 89757 0.84091 + . ID=CGI_10011921; scaffold1874 TRF Tandem_Repeat 82177 82442 397 + . . scaffold1874 TRF Tandem_Repeat 90319 90371 99 + . . scaffold1874 GLEAN mRNA 104779 106803 0.990809 - . ID=CGI_10011922; scaffold1874 GLEAN promoter 106804 107803 0.990809 - . ID=CGI_10011922; scaffold1874 TRF Tandem_Repeat 109291 109673 588 + . . scaffold1874 GLEAN mRNA 117095 118859 0.558382 - . ID=CGI_10011923; scaffold1874 WUBlastX LINE_L1 118455 118859 46 - . . scaffold1874 GLEAN promoter 118860 119859 0.558382 - . ID=CGI_10011923; scaffold1874 GLEAN promoter 120127 121126 0.992091 + . ID=CGI_10011924; scaffold1874 GLEAN mRNA 121127 129667 0.992091 + . ID=CGI_10011924; scaffold1874 TRF Tandem_Repeat 127401 128478 1525 + . . scaffold1874 GLEAN mRNA 133991 135136 0.75436 - . ID=CGI_10011925; scaffold1874 GLEAN promoter 135137 136136 0.75436 - . ID=CGI_10011925; scaffold1874 GLEAN promoter 140606 141605 0.999999 + . ID=CGI_10011926; scaffold1874 GLEAN mRNA 141606 143108 0.999999 + . ID=CGI_10011926; scaffold1874 WUBlastX LTR_ERV1 141837 142202 24 + . . scaffold1874 GLEAN promoter 148925 149924 0.996199 + . ID=CGI_10011927; scaffold1874 GLEAN mRNA 149925 151403 0.996199 + . ID=CGI_10011927; scaffold1874 TRF Tandem_Repeat 155549 155639 107 + . . scaffold1874 TRF Tandem_Repeat 157878 157928 66 + . . scaffold1874 GLEAN mRNA 159255 159506 0.957254 - . ID=CGI_10011928; scaffold1874 GLEAN promoter 159507 160506 0.957254 - . ID=CGI_10011928; scaffold1874 TRF Tandem_Repeat 162476 162571 185 + . . scaffold1874 TRF Tandem_Repeat 163110 163182 137 + . . scaffold1874 TRF Tandem_Repeat 168808 169060 180 + . . scaffold1874 GLEAN promoter 176720 177719 0.999351 + . ID=CGI_10011930; scaffold1874 GLEAN mRNA 177720 184094 0.999351 + . ID=CGI_10011930; scaffold1874 TRF Tandem_Repeat 196971 197005 70 + . . scaffold1874 TRF Tandem_Repeat 200113 200168 71 + . . scaffold1874 TRF Tandem_Repeat 205375 205478 83 + . . scaffold1874 TRF Tandem_Repeat 205375 205445 88 + . . scaffold1874 TRF Tandem_Repeat 205399 205480 74 + . . scaffold1874 TRF Tandem_Repeat 205399 205480 74 + . . scaffold1874 TRF Tandem_Repeat 209259 209295 74 + . . scaffold1874 TRF Tandem_Repeat 209326 209382 60 + . . scaffold1874 TRF Tandem_Repeat 210158 210190 66 + . . scaffold1874 TRF Tandem_Repeat 210998 211026 58 + . . scaffold1874 GLEAN promoter 217597 218596 0.544851 + . ID=CGI_10011931; scaffold1874 TRF Tandem_Repeat 218259 218303 58 + . . scaffold1874 GLEAN mRNA 218597 229500 0.544851 + . ID=CGI_10011931; scaffold1874 GLEAN mRNA 234506 269737 0.695636 - . ID=CGI_10011932; scaffold1874 TRF Tandem_Repeat 238306 239485 1592 + . . scaffold1874 TRF Tandem_Repeat 241789 241863 141 + . . scaffold1874 TRF Tandem_Repeat 248016 248064 89 + . . scaffold1874 TRF Tandem_Repeat 248152 248199 96 + . . scaffold1874 TRF Tandem_Repeat 256147 256203 105 + . . scaffold1874 GLEAN promoter 269738 270737 0.695636 - . ID=CGI_10011932; scaffold1874 TRF Tandem_Repeat 271221 271266 92 + . . scaffold1874 TRF Tandem_Repeat 274524 274589 132 + . . scaffold1874 TRF Tandem_Repeat 275988 276036 98 + . . scaffold1874 TRF Tandem_Repeat 277156 277247 177 + . . scaffold1874 TRF Tandem_Repeat 283422 283504 157 + . . scaffold1874 GLEAN promoter 287511 288510 0.52871 + . ID=CGI_10011933; scaffold1874 GLEAN mRNA 288511 297764 0.52871 + . ID=CGI_10011933; scaffold1874 WUBlastX LINE_L1 296406 296900 24 + . . scaffold1875 WUBlastX DNA_Sola 907 1020 42 + . . scaffold1875 WUBlastX DNA_Sola 1007 1282 40 + . . scaffold1875 WUBlastX DNA_NOF 11260 11520 69 + . . scaffold1875 WUBlastX RC_Helitron 12711 14438 162 + . . scaffold1875 WUBlastX RC_Helitron 13182 14438 369 + . . scaffold1875 WUBlastX RC_Helitron 14434 14535 51 + . . scaffold1875 WUBlastX RC_Helitron 14538 15356 324 + . . scaffold1875 WUBlastX RC_Helitron 15362 15502 61 + . . scaffold1875 WUBlastX RC_Helitron 15502 16053 137 + . . scaffold1875 WUBlastX RC_Helitron 16305 16892 376 + . . scaffold1875 WUBlastX RC_Helitron 16901 17203 39 + . . scaffold1875 WUBlastX RC_Helitron 17000 17179 45 + . . scaffold1875 WUBlastX RC_Helitron 17081 17527 48 + . . scaffold1875 WUBlastX RC_Helitron 17274 17456 51 + . . scaffold1875 WUBlastX DNA_Helitron 17364 17456 80 + . . scaffold1875 WUBlastX RC_Helitron 17533 17763 24 + . . scaffold1875 WUBlastX RC_Helitron 17647 17778 42 + . . scaffold1875 WUBlastX RC_Helitron 17829 18224 65 + . . scaffold1875 GLEAN promoter 21003 22002 0.35214 + . ID=CGI_10006624; scaffold1875 GLEAN mRNA 22003 31388 0.35214 + . ID=CGI_10006624; scaffold1875 GLEAN mRNA 22319 22768 1 - . ID=CGI_10006625; scaffold1875 WUBlastX DNA_Zator 22328 22483 61 - . . scaffold1875 WUBlastX DNA_Zator 22658 22921 67 - . . scaffold1875 GLEAN promoter 22769 23768 1 - . ID=CGI_10006625; scaffold1875 GLEAN mRNA 23363 24929 1 - . ID=CGI_10006626; scaffold1875 WUBlastX DNA_Zator 23429 23635 57 - . . scaffold1875 WUBlastX DNA_Zator 23709 25169 676 - . . scaffold1875 GLEAN promoter 24930 25929 1 - . ID=CGI_10006626; scaffold1875 TRF Tandem_Repeat 28236 28353 227 + . . scaffold1875 TRF Tandem_Repeat 35006 35094 153 + . . scaffold1875 GLEAN promoter 41343 42342 0.999999 + . ID=CGI_10006627; scaffold1875 GLEAN mRNA 42343 48730 0.999999 + . ID=CGI_10006627; scaffold1875 TRF Tandem_Repeat 46310 46343 68 + . . scaffold1875 TRF Tandem_Repeat 47315 47383 131 + . . scaffold1875 TRF Tandem_Repeat 50324 50410 111 + . . scaffold1875 TRF Tandem_Repeat 51798 51887 80 + . . scaffold1875 TRF Tandem_Repeat 51816 52406 537 + . . scaffold1875 TRF Tandem_Repeat 51817 52406 537 + . . scaffold1875 TRF Tandem_Repeat 54768 55083 319 + . . scaffold1875 TRF Tandem_Repeat 54768 55083 326 + . . scaffold1875 GLEAN promoter 54868 55867 0.997947 + . ID=CGI_10006628; scaffold1875 GLEAN mRNA 55868 66005 0.997947 + . ID=CGI_10006628; scaffold1875 TRF Tandem_Repeat 59280 59312 66 + . . scaffold1875 TRF Tandem_Repeat 64869 64960 159 + . . scaffold1875 TRF Tandem_Repeat 64869 64960 147 + . . scaffold1875 WUBlastX LINE_RTE-X 66333 66605 67 - . . scaffold1875 WUBlastX LINE_RTE-X 66426 66605 104 - . . scaffold1875 TRF Tandem_Repeat 70153 70229 75 + . . scaffold1875 TRF Tandem_Repeat 70179 70231 74 + . . scaffold1875 TRF Tandem_Repeat 70295 70354 84 + . . scaffold1875 TRF Tandem_Repeat 73150 73183 68 + . . scaffold1875 TRF Tandem_Repeat 96691 96717 54 + . . scaffold1875 GLEAN promoter 107343 108342 0.510797 + . ID=CGI_10006629; scaffold1875 GLEAN mRNA 108343 110038 0.510797 + . ID=CGI_10006629; scaffold1875 GLEAN promoter 110643 111642 0.998262 + . ID=CGI_10006630; scaffold1875 GLEAN mRNA 111643 144172 0.998262 + . ID=CGI_10006630; scaffold1875 TRF Tandem_Repeat 112792 112838 94 + . . scaffold1875 TRF Tandem_Repeat 112836 112870 70 + . . scaffold1875 TRF Tandem_Repeat 121849 121890 84 + . . scaffold1875 TRF Tandem_Repeat 143017 143051 63 + . . scaffold1875 WUBlastX LINE_CR1-L2 144025 144279 57 + . . scaffold1875 WUBlastX LINE_CR1 144246 144326 31 + . . scaffold1875 WUBlastX LINE_CR1 149629 150000 89 + . . scaffold1875 WUBlastX LINE_CR1 149680 150108 68 + . . scaffold1875 WUBlastX LINE_CR1-L2 149695 149961 112 + . . scaffold1875 WUBlastX LINE_L2 153395 153712 88 + . . scaffold1875 WUBlastX LINE_CR1 153449 154363 448 + . . scaffold1875 WUBlastX LINE_CR1 154369 154551 41 + . . scaffold1875 WUBlastX LINE_CR1 154399 154545 72 + . . scaffold1875 WUBlastX LINE_CR1 154459 154569 23 + . . scaffold1875 TRF Tandem_Repeat 155559 156160 512 + . . scaffold1876 GLEAN promoter 1 73 0.999999 + . ID=CGI_10004962; scaffold1876 GLEAN mRNA 74 18484 0.999999 + . ID=CGI_10004962; scaffold1876 TRF Tandem_Repeat 10494 10532 78 + . . scaffold1876 TRF Tandem_Repeat 11995 13872 2645 + . . scaffold1876 GLEAN mRNA 19006 30062 0.999235 - . ID=CGI_10004963; scaffold1876 TRF Tandem_Repeat 23021 23050 51 + . . scaffold1876 GLEAN promoter 30063 31062 0.999235 - . ID=CGI_10004963; scaffold1876 GLEAN mRNA 33433 38532 1 - . ID=CGI_10004964; scaffold1876 TRF Tandem_Repeat 34516 34945 434 + . . scaffold1876 TRF Tandem_Repeat 34716 34810 113 + . . scaffold1876 TRF Tandem_Repeat 34797 34863 63 + . . scaffold1876 GLEAN promoter 38293 39292 0.998915 + . ID=CGI_10004965; scaffold1876 GLEAN promoter 38533 39532 1 - . ID=CGI_10004964; scaffold1876 GLEAN mRNA 39293 45204 0.998915 + . ID=CGI_10004965; scaffold1876 TRF Tandem_Repeat 41525 41818 543 + . . scaffold1876 TRF Tandem_Repeat 51216 51258 56 + . . scaffold1876 GLEAN promoter 53764 54763 0.992126 + . ID=CGI_10004966; scaffold1876 TRF Tandem_Repeat 53844 53871 56 + . . scaffold1876 GLEAN mRNA 54764 73141 0.992126 + . ID=CGI_10004966; scaffold1876 TRF Tandem_Repeat 76950 77015 123 + . . scaffold1876 GLEAN promoter 80253 81252 0.999531 + . ID=CGI_10004967; scaffold1876 GLEAN mRNA 81253 93787 0.999531 + . ID=CGI_10004967; scaffold1876 TRF Tandem_Repeat 81457 81497 82 + . . scaffold1876 WUBlastX DNA_Helitron 96779 97228 40 - . . scaffold1876 WUBlastX RC_Helitron 97097 97630 58 - . . scaffold1876 WUBlastX LTR_Gypsy 97382 98335 289 - . . scaffold1876 WUBlastX LTR_Gypsy 97556 98407 380 - . . scaffold1876 WUBlastX LTR_ERVL 98950 99015 23 - . . scaffold1876 WUBlastX LTR_Gypsy 99319 99441 29 - . . scaffold1876 WUBlastX LTR_Gypsy 100200 100364 97 - . . scaffold1876 TRF Tandem_Repeat 100725 100794 140 + . . scaffold1876 WUBlastX LINE_CR1 108589 108633 21 + . . scaffold1876 WUBlastX LINE_RTE-BovB 108832 109302 129 + . . scaffold1876 WUBlastX LINE_RTE-X 108940 110505 523 + . . scaffold1876 TRF Tandem_Repeat 112245 112276 55 + . . scaffold1877 TRF Tandem_Repeat 34429 34490 65 + . . scaffold1877 TRF Tandem_Repeat 34434 34487 67 + . . scaffold1877 TRF Tandem_Repeat 39486 39971 765 + . . scaffold1877 TRF Tandem_Repeat 55034 55214 174 + . . scaffold1877 TRF Tandem_Repeat 55034 55218 189 + . . scaffold1877 TRF Tandem_Repeat 56066 56104 78 + . . scaffold1877 GLEAN promoter 58843 59842 0.991006 + . ID=CGI_10011953; scaffold1877 GLEAN mRNA 59843 72629 0.991006 + . ID=CGI_10011953; scaffold1877 TRF Tandem_Repeat 65702 66009 421 + . . scaffold1877 TRF Tandem_Repeat 67159 68901 2537 + . . scaffold1877 GLEAN promoter 76362 77361 1 + . ID=CGI_10011954; scaffold1877 GLEAN mRNA 77362 80561 1 + . ID=CGI_10011954; scaffold1877 TRF Tandem_Repeat 79455 79649 311 + . . scaffold1877 TRF Tandem_Repeat 80826 81046 424 + . . scaffold1877 TRF Tandem_Repeat 82908 82957 75 + . . scaffold1877 GLEAN mRNA 84118 86219 1 - . ID=CGI_10011955; scaffold1877 TRF Tandem_Repeat 85001 85081 74 + . . scaffold1877 TRF Tandem_Repeat 85001 85076 56 + . . scaffold1877 GLEAN promoter 86220 87219 1 - . ID=CGI_10011955; scaffold1877 GLEAN mRNA 86728 98983 0.999922 - . ID=CGI_10011956; scaffold1877 TRF Tandem_Repeat 94686 95101 511 + . . scaffold1877 WUBlastX DNA_NOF? 98822 98962 35 - . . scaffold1877 GLEAN promoter 98984 99983 0.999922 - . ID=CGI_10011956; scaffold1877 GLEAN promoter 101524 102523 1 + . ID=CGI_10011957; scaffold1877 GLEAN mRNA 102524 108240 1 + . ID=CGI_10011957; scaffold1877 TRF Tandem_Repeat 106337 106370 68 + . . scaffold1877 TRF Tandem_Repeat 107044 107117 112 + . . scaffold1877 GLEAN promoter 107526 108525 0.544675 + . ID=CGI_10011958; scaffold1877 GLEAN mRNA 108526 122700 0.544675 + . ID=CGI_10011958; scaffold1877 TRF Tandem_Repeat 114713 115272 1057 + . . scaffold1877 TRF Tandem_Repeat 121571 121644 53 + . . scaffold1877 WUBlastX LINE_RTE-X 123569 123844 73 + . . scaffold1877 WUBlastX LINE_RTE-X 123569 123901 45 + . . scaffold1877 WUBlastX LINE_Penelope 162914 164800 753 - . . scaffold1877 WUBlastX LINE_Penelope 163757 165064 181 - . . scaffold1877 TRF Tandem_Repeat 165454 165519 111 + . . scaffold1877 TRF Tandem_Repeat 186701 186751 66 + . . scaffold1877 TRF Tandem_Repeat 193032 193751 696 + . . scaffold1877 GLEAN mRNA 207006 221557 0.999676 - . ID=CGI_10011959; scaffold1877 TRF Tandem_Repeat 207754 208209 804 + . . scaffold1877 GLEAN promoter 221558 222557 0.999676 - . ID=CGI_10011959; scaffold1877 TRF Tandem_Repeat 225880 225959 151 + . . scaffold1877 TRF Tandem_Repeat 232815 233139 300 + . . scaffold1877 TRF Tandem_Repeat 235921 235946 52 + . . scaffold1877 TRF Tandem_Repeat 235945 235988 79 + . . scaffold1877 WUBlastX LINE_RTE-X 240914 240976 35 - . . scaffold1877 WUBlastX LINE_RTE-X 241290 241436 29 - . . scaffold1877 WUBlastX LINE_RTE-X 241314 241595 62 - . . scaffold1877 WUBlastX LINE_RTE-X 242135 242323 29 - . . scaffold1877 WUBlastX LINE_RTE-X 242421 242465 26 - . . scaffold1877 WUBlastX LINE_RTE-X 242524 242571 21 - . . scaffold1877 TRF Tandem_Repeat 242899 242958 120 + . . scaffold1877 TRF Tandem_Repeat 243724 243759 72 + . . scaffold1877 TRF Tandem_Repeat 246496 246525 51 + . . scaffold1877 TRF Tandem_Repeat 246840 246921 164 + . . scaffold1877 TRF Tandem_Repeat 250586 250639 108 + . . scaffold1877 GLEAN promoter 252631 253630 1 + . ID=CGI_10011960; scaffold1877 GLEAN mRNA 253631 254143 1 + . ID=CGI_10011960; scaffold1877 TRF Tandem_Repeat 257574 257619 92 + . . scaffold1877 TRF Tandem_Repeat 258927 259048 151 + . . scaffold1877 WUBlastX LINE_RTE-X 259545 259673 56 - . . scaffold1877 GLEAN promoter 259700 260699 0.629158 + . ID=CGI_10011961; scaffold1877 GLEAN mRNA 260700 282474 0.629158 + . ID=CGI_10011961; scaffold1877 TRF Tandem_Repeat 271446 271847 540 + . . scaffold1877 TRF Tandem_Repeat 275021 275066 65 + . . scaffold1877 WUBlastX LINE_RTE-BovB 275468 275677 45 - . . scaffold1877 TRF Tandem_Repeat 283848 283947 58 + . . scaffold1877 TRF Tandem_Repeat 284241 284385 119 + . . scaffold1877 TRF Tandem_Repeat 285059 285225 123 + . . scaffold1877 GLEAN promoter 286220 287219 1 + . ID=CGI_10011962; scaffold1877 GLEAN mRNA 287220 291266 1 + . ID=CGI_10011962; scaffold1877 TRF Tandem_Repeat 289962 290048 93 + . . scaffold1877 TRF Tandem_Repeat 290114 290334 130 + . . scaffold1877 TRF Tandem_Repeat 290114 290306 183 + . . scaffold1877 TRF Tandem_Repeat 290333 290577 217 + . . scaffold1877 WUBlastX LINE_RTE-X 291555 292706 55 - . . scaffold1877 WUBlastX LINE_RTE-X 291603 292487 137 - . . scaffold1877 GLEAN promoter 294978 295977 1 + . ID=CGI_10011963; scaffold1877 GLEAN mRNA 295978 306967 1 + . ID=CGI_10011963; scaffold1877 WUBlastX LINE_Rex-Babar 298001 298309 47 + . . scaffold1877 WUBlastX LINE_RTE-X 298061 298378 175 + . . scaffold1877 WUBlastX LINE_RTE-X 298378 298944 206 + . . scaffold1877 WUBlastX LINE_RTE-X 299290 299493 83 + . . scaffold1877 WUBlastX LINE_RTE-X 299290 299562 55 + . . scaffold1878 TRF Tandem_Repeat 1518 1557 80 + . . scaffold1878 GLEAN mRNA 7143 9087 1 - . ID=CGI_10005487; scaffold1878 GLEAN promoter 9088 10087 1 - . ID=CGI_10005487; scaffold1878 GLEAN mRNA 12506 16727 1 - . ID=CGI_10005488; scaffold1878 GLEAN promoter 16728 17727 1 - . ID=CGI_10005488; scaffold1878 TRF Tandem_Repeat 16884 16926 86 + . . scaffold1878 TRF Tandem_Repeat 19010 19080 72 + . . scaffold1878 TRF Tandem_Repeat 19010 19083 91 + . . scaffold1878 TRF Tandem_Repeat 19252 19693 699 + . . scaffold1878 TRF Tandem_Repeat 22914 23047 124 + . . scaffold1878 TRF Tandem_Repeat 25002 25055 74 + . . scaffold1878 WUBlastX LTR_Gypsy 29708 30640 662 + . . scaffold1878 WUBlastX LTR_Gypsy 30449 30679 128 + . . scaffold1878 WUBlastX LTR_Gypsy 30681 30740 35 + . . scaffold1878 WUBlastX LTR_Gypsy 30708 31502 91 + . . scaffold1878 WUBlastX LTR_Gypsy 30708 31004 122 + . . scaffold1878 WUBlastX LTR_Gypsy 30708 31340 97 + . . scaffold1878 WUBlastX LTR_Gypsy 30720 30875 125 + . . scaffold1878 WUBlastX LINE_RTE-BovB 40327 40548 116 + . . scaffold1878 WUBlastX LINE_RTE-BovB 40556 41014 252 + . . scaffold1878 WUBlastX LINE_RTE-BovB 40556 41248 172 + . . scaffold1878 WUBlastX LINE_RTE-BovB 41143 41697 234 + . . scaffold1878 WUBlastX LINE_RTE-BovB 41694 41855 106 + . . scaffold1878 WUBlastX LINE_RTE-BovB 41855 41935 47 + . . scaffold1878 WUBlastX LINE_RTE-BovB 41855 41989 32 + . . scaffold1878 WUBlastX LINE_RTE-BovB 42201 42383 31 + . . scaffold1878 WUBlastX LINE_RTE-BovB 42276 42395 50 + . . scaffold1878 WUBlastX LINE_RTE-BovB 42398 42652 111 + . . scaffold1878 WUBlastX LINE_RTE-BovB 42652 42840 107 + . . scaffold1878 WUBlastX LINE_RTE-BovB 42840 43100 153 + . . scaffold1878 WUBlastX LTR_DIRS 52879 53358 91 + . . scaffold1878 WUBlastX LTR_Gypsy 53008 53427 69 + . . scaffold1878 WUBlastX LTR_Gypsy 53050 53508 38 + . . scaffold1878 TRF Tandem_Repeat 55374 55471 67 + . . scaffold1878 TRF Tandem_Repeat 58742 58778 56 + . . scaffold1878 TRF Tandem_Repeat 61517 61570 81 + . . scaffold1878 GLEAN mRNA 61636 68675 0.999676 - . ID=CGI_10005490; scaffold1878 GLEAN promoter 68676 69675 0.999676 - . ID=CGI_10005490; scaffold1878 GLEAN mRNA 72255 79672 0.544852 - . ID=CGI_10005491; scaffold1878 TRF Tandem_Repeat 78537 78582 92 + . . scaffold1878 GLEAN promoter 79673 80672 0.544852 - . ID=CGI_10005491; scaffold1878 TRF Tandem_Repeat 81826 81859 68 + . . scaffold1878 TRF Tandem_Repeat 85289 85320 55 + . . scaffold1878 TRF Tandem_Repeat 89386 89454 131 + . . scaffold1878 GLEAN mRNA 90538 97698 1 - . ID=CGI_10005492; scaffold1878 GLEAN promoter 97699 98698 1 - . ID=CGI_10005492; scaffold1878 GLEAN mRNA 101140 109667 0.654516 - . ID=CGI_10005493; scaffold1878 TRF Tandem_Repeat 104401 104452 104 + . . scaffold1878 GLEAN promoter 109510 110509 0.732797 + . ID=CGI_10005494; scaffold1878 GLEAN promoter 109668 110667 0.654516 - . ID=CGI_10005493; scaffold1878 TRF Tandem_Repeat 109852 109900 98 + . . scaffold1878 GLEAN mRNA 110510 112206 0.732797 + . ID=CGI_10005494; scaffold1878 TRF Tandem_Repeat 111194 111245 104 + . . scaffold1878 GLEAN mRNA 114151 119378 0.507137 - . ID=CGI_10005495; scaffold1878 GLEAN promoter 119379 120378 0.507137 - . ID=CGI_10005495; scaffold1878 WUBlastX LTR_Gypsy 120500 121135 175 + . . scaffold1878 WUBlastX LTR_Gypsy 120539 121060 189 + . . scaffold1878 WUBlastX LTR_Gypsy 124705 125667 487 + . . scaffold1879 TRF Tandem_Repeat 2030 2077 51 + . . scaffold1879 GLEAN mRNA 2133 12134 0.833528 - . ID=CGI_10007951; scaffold1879 GLEAN promoter 12135 13134 0.833528 - . ID=CGI_10007951; scaffold1879 GLEAN promoter 16088 17087 0.327022 + . ID=CGI_10007952; scaffold1879 GLEAN mRNA 17088 26742 0.327022 + . ID=CGI_10007952; scaffold1879 WUBlastX LTR_Gypsy 18987 19676 81 + . . scaffold1879 TRF Tandem_Repeat 23808 23854 51 + . . scaffold1879 GLEAN mRNA 26583 52099 0.804824 - . ID=CGI_10007953; scaffold1879 TRF Tandem_Repeat 38310 38422 81 + . . scaffold1879 TRF Tandem_Repeat 38348 38470 131 + . . scaffold1879 GLEAN promoter 52100 53099 0.804824 - . ID=CGI_10007953; scaffold1879 TRF Tandem_Repeat 65174 65211 76 + . . scaffold1879 TRF Tandem_Repeat 68278 68898 235 + . . scaffold1879 GLEAN promoter 69616 70615 1 + . ID=CGI_10007954; scaffold1879 GLEAN mRNA 70616 86446 1 + . ID=CGI_10007954; scaffold1879 TRF Tandem_Repeat 79467 79522 105 + . . scaffold1879 GLEAN promoter 86282 87281 1 + . ID=CGI_10007955; scaffold1879 GLEAN mRNA 87282 89069 1 + . ID=CGI_10007955; scaffold1879 GLEAN promoter 88608 89607 0.991021 + . ID=CGI_10007956; scaffold1879 GLEAN mRNA 89608 98258 0.991021 + . ID=CGI_10007956; scaffold1879 GLEAN mRNA 99093 109554 0.803871 - . ID=CGI_10007957; scaffold1879 TRF Tandem_Repeat 105217 105248 57 + . . scaffold1879 GLEAN promoter 106570 107569 1 + . ID=CGI_10007958; scaffold1879 GLEAN mRNA 107570 109837 1 + . ID=CGI_10007958; scaffold1879 GLEAN promoter 109555 110554 0.803871 - . ID=CGI_10007957; scaffold1879 GLEAN promoter 110827 111826 0.999415 + . ID=CGI_10007959; scaffold1879 GLEAN mRNA 111827 116871 0.999415 + . ID=CGI_10007959; scaffold1879 GLEAN mRNA 117371 122368 1 - . ID=CGI_10007960; scaffold1879 WUBlastX LINE_CR1-L2 120064 120471 147 - . . scaffold1879 WUBlastX LINE_CR1-L2 120136 120504 183 - . . scaffold1879 WUBlastX LINE_CR1-L2 120506 121999 737 - . . scaffold1879 WUBlastX LINE_CR1 120512 122272 357 - . . scaffold1879 GLEAN promoter 122369 123368 1 - . ID=CGI_10007960; scaffold1879 GLEAN promoter 127002 128001 0.67117 + . ID=CGI_10007961; scaffold1879 GLEAN mRNA 128002 133272 0.67117 + . ID=CGI_10007961; scaffold1879 TRF Tandem_Repeat 138412 138454 68 + . . scaffold1879 TRF Tandem_Repeat 167508 167563 105 + . . scaffold1879 TRF Tandem_Repeat 171394 171425 64 + . . scaffold1879 TRF Tandem_Repeat 175751 175884 101 + . . scaffold1879 GLEAN promoter 176606 177605 0.766349 + . ID=CGI_10007962; scaffold1879 TRF Tandem_Repeat 176879 177019 120 + . . scaffold1879 GLEAN mRNA 177606 192604 0.766349 + . ID=CGI_10007962; scaffold1879 TRF Tandem_Repeat 179078 179219 146 + . . scaffold1879 TRF Tandem_Repeat 183276 183321 92 + . . scaffold1879 TRF Tandem_Repeat 185157 185194 67 + . . scaffold1879 TRF Tandem_Repeat 193924 194034 106 + . . scaffold188 GLEAN promoter 6770 7769 0.999204 + . ID=CGI_10009311; scaffold188 GLEAN mRNA 7770 17806 0.999204 + . ID=CGI_10009311; scaffold188 WUBlastX DNA_Zator 12383 12556 32 + . . scaffold188 WUBlastX DNA_Zator 12671 13783 391 + . . scaffold188 TRF Tandem_Repeat 18130 18922 1120 + . . scaffold188 TRF Tandem_Repeat 40105 40447 155 + . . scaffold188 TRF Tandem_Repeat 41520 41875 270 + . . scaffold188 TRF Tandem_Repeat 41520 41875 269 + . . scaffold188 TRF Tandem_Repeat 41520 41873 263 + . . scaffold188 TRF Tandem_Repeat 43848 44201 263 + . . scaffold188 TRF Tandem_Repeat 43848 44203 269 + . . scaffold188 TRF Tandem_Repeat 43848 44203 270 + . . scaffold188 TRF Tandem_Repeat 49507 50618 1400 + . . scaffold188 TRF Tandem_Repeat 51353 52226 780 + . . scaffold188 TRF Tandem_Repeat 53118 53190 66 + . . scaffold188 GLEAN promoter 63342 64341 0.542368 + . ID=CGI_10009312; scaffold188 GLEAN mRNA 64342 84490 0.542368 + . ID=CGI_10009312; scaffold188 TRF Tandem_Repeat 85416 85463 96 + . . scaffold188 TRF Tandem_Repeat 87363 87514 259 + . . scaffold188 GLEAN mRNA 90346 111374 0.733691 - . ID=CGI_10009313; scaffold188 TRF Tandem_Repeat 94894 94981 162 + . . scaffold188 TRF Tandem_Repeat 99093 99137 90 + . . scaffold188 GLEAN promoter 111375 112374 0.733691 - . ID=CGI_10009313; scaffold188 TRF Tandem_Repeat 111670 111707 76 + . . scaffold188 TRF Tandem_Repeat 126894 126979 127 + . . scaffold188 WUBlastX DNA_Harbinger 128685 129056 149 + . . scaffold188 WUBlastX DNA_Harbinger 128730 128990 168 + . . scaffold188 WUBlastX DNA_Harbinger 129025 129540 112 + . . scaffold188 WUBlastX DNA_Harbinger 129136 129558 323 + . . scaffold188 WUBlastX DNA_Harbinger 131041 131169 25 + . . scaffold188 TRF Tandem_Repeat 145048 146332 1455 + . . scaffold188 GLEAN mRNA 146708 149881 0.836238 - . ID=CGI_10009314; scaffold188 GLEAN promoter 149882 150881 0.836238 - . ID=CGI_10009314; scaffold188 GLEAN mRNA 152342 165428 0.937828 - . ID=CGI_10009315; scaffold188 GLEAN promoter 165429 166428 0.937828 - . ID=CGI_10009315; scaffold188 GLEAN mRNA 182410 189891 0.999922 - . ID=CGI_10009316; scaffold188 TRF Tandem_Repeat 187588 187627 53 + . . scaffold188 TRF Tandem_Repeat 187748 187779 64 + . . scaffold188 GLEAN promoter 189892 190891 0.999922 - . ID=CGI_10009316; scaffold188 TRF Tandem_Repeat 197412 198267 867 + . . scaffold188 TRF Tandem_Repeat 199781 200817 1247 + . . scaffold188 WUBlastX LTR_Gypsy-Troyk 203713 204186 144 - . . scaffold188 WUBlastX DNA_Sola 213202 213438 86 + . . scaffold188 WUBlastX DNA_Sola 213232 213495 77 + . . scaffold188 WUBlastX DNA_Sola 213527 213577 20 + . . scaffold188 TRF Tandem_Repeat 214118 214142 50 + . . scaffold188 WUBlastX DNA_Sola 215675 216076 83 + . . scaffold188 WUBlastX DNA_Sola 215976 216359 93 + . . scaffold188 WUBlastX DNA_Sola 216072 216632 328 + . . scaffold188 WUBlastX DNA_Sola 216093 216899 179 + . . scaffold188 WUBlastX DNA_Sola 216822 217289 101 + . . scaffold188 TRF Tandem_Repeat 217736 217783 96 + . . scaffold188 WUBlastX DNA_Sola 218032 219261 337 + . . scaffold188 WUBlastX LINE_RTE-X 223354 224283 204 + . . scaffold188 TRF Tandem_Repeat 225021 225053 66 + . . scaffold188 WUBlastX LINE_RTE-X 225399 225572 37 + . . scaffold188 WUBlastX LINE_RTE-X 225572 225718 84 + . . scaffold188 WUBlastX LINE_RTE-X 225575 225823 65 + . . scaffold188 WUBlastX LINE_RTE-X 225575 225751 80 + . . scaffold188 TRF Tandem_Repeat 226009 226036 56 + . . scaffold188 WUBlastX LINE_L1-Tx1 227672 227959 94 + . . scaffold188 WUBlastX LINE_L1 227672 227881 103 + . . scaffold1880 GLEAN promoter 1 732 0.999547 + . ID=CGI_10008203; scaffold1880 GLEAN mRNA 733 4892 0.999547 + . ID=CGI_10008203; scaffold1880 GLEAN mRNA 5602 92195 0.383639 - . ID=CGI_10008204; scaffold1880 TRF Tandem_Repeat 42796 42841 92 + . . scaffold1880 WUBlastX LINE_L2 51497 51853 52 + . . scaffold1880 WUBlastX LINE_RTE-X 51551 54814 926 + . . scaffold1880 WUBlastX LINE_RTE-X 52502 54811 1112 + . . scaffold1880 TRF Tandem_Repeat 69764 69817 108 + . . scaffold1880 GLEAN promoter 92196 93195 0.383639 - . ID=CGI_10008204; scaffold1880 WUBlastX LTR_Gypsy 98131 98382 140 + . . scaffold1880 WUBlastX LTR_Gypsy 98477 98686 62 + . . scaffold1880 GLEAN mRNA 101828 107535 1 - . ID=CGI_10008205; scaffold1880 GLEAN promoter 107536 108535 1 - . ID=CGI_10008205; scaffold1880 GLEAN mRNA 108665 114222 0.994137 - . ID=CGI_10008206; scaffold1880 TRF Tandem_Repeat 110509 110562 108 + . . scaffold1880 TRF Tandem_Repeat 113798 113858 122 + . . scaffold1880 GLEAN promoter 114223 115222 0.994137 - . ID=CGI_10008206; scaffold1880 GLEAN mRNA 117178 135416 0.811393 - . ID=CGI_10008207; scaffold1880 TRF Tandem_Repeat 128659 128698 53 + . . scaffold1880 TRF Tandem_Repeat 130606 130640 70 + . . scaffold1880 GLEAN promoter 135417 136416 0.811393 - . ID=CGI_10008207; scaffold1880 GLEAN promoter 136756 137755 0.999997 + . ID=CGI_10008208; scaffold1880 GLEAN mRNA 137756 143314 0.999997 + . ID=CGI_10008208; scaffold1880 GLEAN mRNA 139430 141040 0.999479 - . ID=CGI_10008209; scaffold1880 GLEAN promoter 141041 142040 0.999479 - . ID=CGI_10008209; scaffold1880 GLEAN mRNA 146239 157366 1 - . ID=CGI_10008210; scaffold1880 TRF Tandem_Repeat 151783 151811 58 + . . scaffold1880 GLEAN promoter 157367 158366 1 - . ID=CGI_10008210; scaffold1880 GLEAN promoter 157558 158557 0.620267 + . ID=CGI_10008211; scaffold1880 GLEAN mRNA 158558 166347 0.620267 + . ID=CGI_10008211; scaffold1880 GLEAN mRNA 168489 169970 1 - . ID=CGI_10008212; scaffold1880 GLEAN promoter 169971 170970 1 - . ID=CGI_10008212; scaffold1880 GLEAN mRNA 173726 184034 1 - . ID=CGI_10008213; scaffold1880 TRF Tandem_Repeat 174939 175067 132 + . . scaffold1880 TRF Tandem_Repeat 178245 178287 86 + . . scaffold1880 TRF Tandem_Repeat 180402 181815 2006 + . . scaffold1880 GLEAN promoter 184035 185034 1 - . ID=CGI_10008213; scaffold1880 WUBlastX LINE_RTE-BovB 188779 188880 37 - . . scaffold1880 TRF Tandem_Repeat 189571 189770 242 + . . scaffold1880 GLEAN mRNA 190302 194144 1 - . ID=CGI_10008214; scaffold1880 WUBlastX LTR_Pao 191335 191913 196 + . . scaffold1880 WUBlastX LTR_Pao 191440 191916 364 + . . scaffold1880 GLEAN promoter 194145 195144 1 - . ID=CGI_10008214; scaffold1880 GLEAN mRNA 194517 198965 0.647646 - . ID=CGI_10008215; scaffold1880 GLEAN promoter 198272 199271 0.999988 + . ID=CGI_10008216; scaffold1880 GLEAN promoter 198966 199965 0.647646 - . ID=CGI_10008215; scaffold1880 GLEAN mRNA 199272 204362 0.999988 + . ID=CGI_10008216; scaffold1880 TRF Tandem_Repeat 200053 200083 62 + . . scaffold1881 TRF Tandem_Repeat 596 637 68 + . . scaffold1881 TRF Tandem_Repeat 600 642 54 + . . scaffold1881 GLEAN mRNA 1178 13394 0.992544 - . ID=CGI_10006126; scaffold1881 GLEAN promoter 11783 12782 1 + . ID=CGI_10006127; scaffold1881 GLEAN mRNA 12783 19124 1 + . ID=CGI_10006127; scaffold1881 GLEAN promoter 13395 14394 0.992544 - . ID=CGI_10006126; scaffold1881 TRF Tandem_Repeat 15309 15346 76 + . . scaffold1881 GLEAN promoter 18697 19696 0.999998 + . ID=CGI_10006128; scaffold1881 GLEAN mRNA 19697 35299 0.999998 + . ID=CGI_10006128; scaffold1881 TRF Tandem_Repeat 22180 23010 934 + . . scaffold1881 GLEAN mRNA 39220 49380 0.934445 - . ID=CGI_10006129; scaffold1881 TRF Tandem_Repeat 41009 41087 113 + . . scaffold1881 GLEAN promoter 49381 50380 0.934445 - . ID=CGI_10006129; scaffold1881 TRF Tandem_Repeat 49642 49857 131 + . . scaffold1881 TRF Tandem_Repeat 50827 50925 74 + . . scaffold1881 TRF Tandem_Repeat 51008 51090 69 + . . scaffold1881 WUBlastX LINE_L2 53329 53520 31 - . . scaffold1881 WUBlastX LINE_L2 53534 53641 29 - . . scaffold1881 WUBlastX DNA_TcMar-Marin 54389 54529 58 + . . scaffold1881 WUBlastX DNA_TcMar-Marin 54413 54616 61 + . . scaffold1881 GLEAN mRNA 56154 57110 0.999661 - . ID=CGI_10006130; scaffold1881 GLEAN promoter 57111 58110 0.999661 - . ID=CGI_10006130; scaffold1881 WUBlastX LINE_L2 57731 58309 231 - . . scaffold1881 WUBlastX LINE_CR1-L2 58299 58493 100 - . . scaffold1881 GLEAN promoter 58592 59591 1 + . ID=CGI_10006131; scaffold1881 GLEAN mRNA 59592 66178 1 + . ID=CGI_10006131; scaffold1881 GLEAN mRNA 69740 70911 1 - . ID=CGI_10006132; scaffold1881 GLEAN promoter 70912 71911 1 - . ID=CGI_10006132; scaffold1881 TRF Tandem_Repeat 76513 76604 73 + . . scaffold1881 TRF Tandem_Repeat 87207 87260 108 + . . scaffold1881 TRF Tandem_Repeat 87380 87419 80 + . . scaffold1881 GLEAN promoter 88831 89830 0.515438 + . ID=CGI_10006133; scaffold1881 GLEAN mRNA 89831 91614 0.515438 + . ID=CGI_10006133; scaffold1881 TRF Tandem_Repeat 92052 92101 66 + . . scaffold1881 TRF Tandem_Repeat 93619 93654 72 + . . scaffold1881 TRF Tandem_Repeat 101387 101450 51 + . . scaffold1881 TRF Tandem_Repeat 101388 101450 60 + . . scaffold1881 WUBlastX LINE_L2 101724 102320 53 + . . scaffold1881 TRF Tandem_Repeat 101818 101860 52 + . . scaffold1881 WUBlastX LINE_RTE-X 101865 103052 516 + . . scaffold1881 GLEAN promoter 102922 103921 0.592433 + . ID=CGI_10006134; scaffold1881 GLEAN mRNA 103922 104476 0.592433 + . ID=CGI_10006134; scaffold1881 GLEAN promoter 106359 107358 0.701606 + . ID=CGI_10006137; scaffold1881 GLEAN mRNA 107359 108852 0.701606 + . ID=CGI_10006137; scaffold1881 WUBlastX LINE_RTE-X 117700 117975 48 + . . scaffold1881 WUBlastX LINE_RTE-X 117700 117924 78 + . . scaffold1881 WUBlastX LINE_RTE-X 117736 117930 92 + . . scaffold1881 GLEAN promoter 119227 120226 0.865841 + . ID=CGI_10006138; scaffold1881 TRF Tandem_Repeat 119879 119905 54 + . . scaffold1881 GLEAN mRNA 120227 134353 0.865841 + . ID=CGI_10006138; scaffold1881 TRF Tandem_Repeat 125119 125187 138 + . . scaffold1881 WUBlastX LINE_CR1 136159 136884 47 + . . scaffold1881 WUBlastX LINE_Proto2 136399 138828 339 + . . scaffold1881 WUBlastX LINE_RTE-X 136981 139134 426 + . . scaffold1881 WUBlastX LINE_RTE-X 136987 139644 297 + . . scaffold1881 GLEAN mRNA 142747 145417 0.999946 - . ID=CGI_10006139; scaffold1881 GLEAN promoter 145418 146371 0.999946 - . ID=CGI_10006139; scaffold1882 WUBlastX LINE_Penelope 1922 2356 159 + . . scaffold1882 GLEAN promoter 7742 8741 0.650712 + . ID=CGI_10010492; scaffold1882 GLEAN mRNA 8742 29941 0.650712 + . ID=CGI_10010492; scaffold1882 WUBlastX LTR_Pao 18121 18228 51 + . . scaffold1882 WUBlastX LTR_Pao 18201 18527 26 + . . scaffold1882 WUBlastX LTR_Pao 18207 18446 176 + . . scaffold1882 WUBlastX LTR_Pao 18634 18897 75 + . . scaffold1882 WUBlastX LTR_Pao 18860 19432 131 + . . scaffold1882 WUBlastX LTR_Pao 18998 19423 336 + . . scaffold1882 WUBlastX LTR_Pao 19413 19496 27 + . . scaffold1882 WUBlastX LTR_Pao 19413 19478 34 + . . scaffold1882 GLEAN promoter 32273 33272 0.546644 + . ID=CGI_10010493; scaffold1882 GLEAN mRNA 33273 39935 0.546644 + . ID=CGI_10010493; scaffold1882 TRF Tandem_Repeat 34479 34538 84 + . . scaffold1882 TRF Tandem_Repeat 34479 34546 64 + . . scaffold1882 TRF Tandem_Repeat 34488 34547 75 + . . scaffold1882 GLEAN promoter 42766 43765 0.999372 + . ID=CGI_10010494; scaffold1882 GLEAN promoter 43156 44155 0.999372 + . ID=CGI_10010495; scaffold1882 GLEAN mRNA 43766 44077 0.999372 + . ID=CGI_10010494; scaffold1882 GLEAN mRNA 44156 44554 0.999372 + . ID=CGI_10010495; scaffold1882 WUBlastX DNA_Sola 56143 57441 258 + . . scaffold1882 WUBlastX DNA_Sola 56458 57672 203 + . . scaffold1882 WUBlastX DNA_Sola 57503 57760 46 + . . scaffold1882 WUBlastX DNA_hAT-hATw 58961 59629 58 + . . scaffold1882 WUBlastX DNA_Sola 59432 59710 64 + . . scaffold1882 WUBlastX LINE_L1-Tx1 68456 68671 64 - . . scaffold1882 WUBlastX LINE_Penelope 68846 69244 68 - . . scaffold1882 WUBlastX LINE_Penelope 68873 69196 72 - . . scaffold1882 WUBlastX LINE_Penelope 69259 69561 46 - . . scaffold1882 WUBlastX LINE_Penelope 69320 69904 55 - . . scaffold1882 WUBlastX LINE_Penelope 69398 69790 106 - . . scaffold1882 WUBlastX LINE_Penelope 69451 69594 122 - . . scaffold1882 WUBlastX LINE_Penelope 69849 70112 48 - . . scaffold1882 WUBlastX LINE_L1 70212 70238 25 - . . scaffold1882 WUBlastX LINE_L1-Tx1 70411 70539 40 - . . scaffold1882 WUBlastX LINE_L1 70610 70711 20 - . . scaffold1882 WUBlastX LINE_L1-Tx1 70720 70944 27 - . . scaffold1882 WUBlastX LINE_L1-Tx1 70756 70935 56 - . . scaffold1882 WUBlastX LINE_L1-Tx1 70923 72005 294 - . . scaffold1882 WUBlastX LINE_L1 72010 72075 23 - . . scaffold1882 GLEAN promoter 78009 79008 0.702304 + . ID=CGI_10010496; scaffold1882 WUBlastX LTR_Gypsy 78565 78927 44 + . . scaffold1882 GLEAN mRNA 79009 83477 0.702304 + . ID=CGI_10010496; scaffold1882 GLEAN promoter 83853 84852 0.734385 + . ID=CGI_10010498; scaffold1882 GLEAN mRNA 84850 91875 0.999394 - . ID=CGI_10010497; scaffold1882 GLEAN mRNA 84853 99664 0.734385 + . ID=CGI_10010498; scaffold1882 GLEAN promoter 91876 92875 0.999394 - . ID=CGI_10010497; scaffold1882 TRF Tandem_Repeat 95837 95882 92 + . . scaffold1882 TRF Tandem_Repeat 98900 98943 88 + . . scaffold1882 GLEAN mRNA 101586 103226 0.999675 - . ID=CGI_10010499; scaffold1882 GLEAN promoter 103227 104226 0.999675 - . ID=CGI_10010499; scaffold1882 GLEAN promoter 106882 107881 0.85553 + . ID=CGI_10010500; scaffold1882 GLEAN mRNA 107882 108325 0.85553 + . ID=CGI_10010500; scaffold1882 GLEAN mRNA 110254 111651 0.593389 - . ID=CGI_10010501; scaffold1882 WUBlastX LTR_Gypsy 111232 111612 45 - . . scaffold1882 GLEAN promoter 111652 112651 0.593389 - . ID=CGI_10010501; scaffold1882 TRF Tandem_Repeat 112056 112111 103 + . . scaffold1882 TRF Tandem_Repeat 113746 114285 468 + . . scaffold1882 TRF Tandem_Repeat 113768 114281 546 + . . scaffold1882 GLEAN promoter 113918 114917 0.544852 + . ID=CGI_10010502; scaffold1882 GLEAN mRNA 114918 115283 0.544852 + . ID=CGI_10010502; scaffold1882 GLEAN promoter 117969 118968 0.999999 + . ID=CGI_10010503; scaffold1882 GLEAN mRNA 118969 130627 0.999999 + . ID=CGI_10010503; scaffold1882 TRF Tandem_Repeat 126103 126149 94 + . . scaffold1882 GLEAN promoter 132414 133413 0.999372 + . ID=CGI_10010504; scaffold1882 GLEAN mRNA 133414 133695 0.999372 + . ID=CGI_10010504; scaffold1882 GLEAN promoter 133648 134647 0.998989 + . ID=CGI_10010505; scaffold1882 GLEAN mRNA 134648 138399 0.998989 + . ID=CGI_10010505; scaffold1882 TRF Tandem_Repeat 136729 137448 449 + . . scaffold1882 TRF Tandem_Repeat 136839 137429 581 + . . scaffold1882 TRF Tandem_Repeat 136839 137429 542 + . . scaffold1882 GLEAN promoter 138430 139429 0.999129 + . ID=CGI_10010506; scaffold1882 GLEAN mRNA 139430 150969 0.999129 + . ID=CGI_10010506; scaffold1882 WUBlastX LTR_DIRS 147813 148403 66 - . . scaffold1882 WUBlastX LTR_DIRS 147918 148403 75 - . . scaffold1882 WUBlastX LTR_Ngaro 148372 148914 99 - . . scaffold1882 WUBlastX LTR_DIRS 148929 149618 156 - . . scaffold1882 WUBlastX LTR_DIRS 148929 149744 73 - . . scaffold1882 GLEAN mRNA 153027 155315 1 - . ID=CGI_10010507; scaffold1882 GLEAN promoter 155316 156315 1 - . ID=CGI_10010507; scaffold1882 GLEAN promoter 156460 157459 1 + . ID=CGI_10010508; scaffold1882 TRF Tandem_Repeat 157068 157140 146 + . . scaffold1882 GLEAN mRNA 157460 161073 1 + . ID=CGI_10010508; scaffold1882 TRF Tandem_Repeat 160602 160668 54 + . . scaffold1882 TRF Tandem_Repeat 160602 160668 66 + . . scaffold1882 GLEAN mRNA 163262 170861 1 - . ID=CGI_10010509; scaffold1882 GLEAN promoter 170862 171861 1 - . ID=CGI_10010509; scaffold1882 WUBlastX LINE_CR1-L2 172932 173534 38 - . . scaffold1882 WUBlastX LINE_CR1 172938 173297 72 - . . scaffold1882 WUBlastX LINE_CR1 172938 173222 186 - . . scaffold1882 TRF Tandem_Repeat 174923 174978 76 + . . scaffold1882 GLEAN promoter 175774 176773 0.965742 + . ID=CGI_10010510; scaffold1882 GLEAN mRNA 176774 178524 0.965742 + . ID=CGI_10010510; scaffold1882 TRF Tandem_Repeat 177233 177529 490 + . . scaffold1882 TRF Tandem_Repeat 177326 177522 89 + . . scaffold1882 GLEAN promoter 178348 179347 0.472781 + . ID=CGI_10010511; scaffold1882 GLEAN mRNA 179348 189683 0.472781 + . ID=CGI_10010511; scaffold1882 TRF Tandem_Repeat 180508 182050 1580 + . . scaffold1882 TRF Tandem_Repeat 180512 180959 666 + . . scaffold1882 TRF Tandem_Repeat 181034 182050 1469 + . . scaffold1882 TRF Tandem_Repeat 182815 183004 353 + . . scaffold1882 TRF Tandem_Repeat 188753 188966 185 + . . scaffold1882 TRF Tandem_Repeat 189257 189449 260 + . . scaffold1882 TRF Tandem_Repeat 192238 192314 154 + . . scaffold1882 TRF Tandem_Repeat 192299 192470 281 + . . scaffold1882 TRF Tandem_Repeat 194675 195269 742 + . . scaffold1882 TRF Tandem_Repeat 194675 195269 762 + . . scaffold1882 GLEAN promoter 195754 196753 1 + . ID=CGI_10010512; scaffold1882 TRF Tandem_Repeat 196522 196564 86 + . . scaffold1882 GLEAN mRNA 196754 197538 1 + . ID=CGI_10010512; scaffold1882 WUBlastX RC_Helitron 201426 204014 1365 - . . scaffold1882 WUBlastX RC_Helitron 201933 206603 1444 - . . scaffold1882 WUBlastX RC_Helitron 203589 206645 1892 - . . scaffold1882 TRF Tandem_Repeat 208215 208634 556 + . . scaffold1882 TRF Tandem_Repeat 208340 208566 122 + . . scaffold1882 TRF Tandem_Repeat 220108 220149 84 + . . scaffold1882 TRF Tandem_Repeat 220700 220779 88 + . . scaffold1882 GLEAN promoter 226211 227210 0.998987 + . ID=CGI_10010513; scaffold1882 GLEAN mRNA 227211 231340 0.998987 + . ID=CGI_10010513; scaffold1882 TRF Tandem_Repeat 239501 239816 206 + . . scaffold1882 TRF Tandem_Repeat 250613 250807 230 + . . scaffold1882 TRF Tandem_Repeat 252314 252728 634 + . . scaffold1882 TRF Tandem_Repeat 252321 252828 455 + . . scaffold1882 TRF Tandem_Repeat 252321 252714 468 + . . scaffold1883 GLEAN mRNA 15843 16052 0.516245 - . ID=CGI_10011540; scaffold1883 GLEAN promoter 16053 17052 0.516245 - . ID=CGI_10011540; scaffold1883 TRF Tandem_Repeat 22405 22705 372 + . . scaffold1883 WUBlastX LINE_I 27276 27830 44 + . . scaffold1883 WUBlastX LINE_RTE-BovB 27414 27887 47 + . . scaffold1883 WUBlastX LINE_RTE-X 27537 27677 55 + . . scaffold1883 WUBlastX LINE_RTE-X 27582 28436 170 + . . scaffold1883 GLEAN promoter 29812 30811 0.86662 + . ID=CGI_10011541; scaffold1883 GLEAN mRNA 30812 32027 0.86662 + . ID=CGI_10011541; scaffold1883 TRF Tandem_Repeat 32085 32138 101 + . . scaffold1883 TRF Tandem_Repeat 32377 32415 78 + . . scaffold1883 WUBlastX DNA_TcMar-Marin 35761 35820 21 - . . scaffold1883 WUBlastX DNA_TcMar-Marin 35801 35941 35 - . . scaffold1883 WUBlastX DNA_TcMar-Marin 35864 35956 32 - . . scaffold1883 TRF Tandem_Repeat 36209 36238 60 + . . scaffold1883 WUBlastX LINE_RTE-X 36529 37599 427 - . . scaffold1883 WUBlastX LINE_RTE-X 37556 37921 190 - . . scaffold1883 WUBlastX LINE_Penelope 38851 39261 52 + . . scaffold1883 WUBlastX LINE_Penelope 38872 39171 130 + . . scaffold1883 TRF Tandem_Repeat 39765 39802 76 + . . scaffold1883 TRF Tandem_Repeat 47051 47344 429 + . . scaffold1883 TRF Tandem_Repeat 48216 48247 64 + . . scaffold1883 TRF Tandem_Repeat 48649 48744 81 + . . scaffold1883 GLEAN mRNA 52792 61509 0.999999 - . ID=CGI_10011542; scaffold1883 TRF Tandem_Repeat 58143 58242 163 + . . scaffold1883 TRF Tandem_Repeat 60092 60318 216 + . . scaffold1883 GLEAN promoter 61510 62509 0.999999 - . ID=CGI_10011542; scaffold1883 GLEAN mRNA 61977 85434 0.999247 - . ID=CGI_10011543; scaffold1883 TRF Tandem_Repeat 77881 77932 77 + . . scaffold1883 GLEAN promoter 85435 86434 0.999247 - . ID=CGI_10011543; scaffold1883 TRF Tandem_Repeat 86918 86951 68 + . . scaffold1883 WUBlastX LINE_L1-Tx1 87039 87353 57 - . . scaffold1883 WUBlastX LINE_RTE-X 87275 87736 69 + . . scaffold1883 WUBlastX LINE_RTE-X 87347 87616 72 + . . scaffold1883 WUBlastX LINE_RTE-X 87356 87736 71 + . . scaffold1883 WUBlastX LINE_L1-Tx1 87937 88086 25 - . . scaffold1883 TRF Tandem_Repeat 88809 89781 1476 + . . scaffold1883 WUBlastX LINE_L1-Tx1 90288 91064 226 - . . scaffold1883 GLEAN promoter 90932 91931 0.762247 + . ID=CGI_10011544; scaffold1883 WUBlastX LINE_L1 91073 91549 36 - . . scaffold1883 WUBlastX LINE_L1-Tx1 91079 91450 153 - . . scaffold1883 GLEAN mRNA 91932 92747 0.762247 + . ID=CGI_10011544; scaffold1883 TRF Tandem_Repeat 95050 95116 100 + . . scaffold1883 GLEAN mRNA 96259 96558 0.642524 - . ID=CGI_10011545; scaffold1883 GLEAN promoter 96559 97558 0.642524 - . ID=CGI_10011545; scaffold1883 WUBlastX DNA_Harbinger 99998 100273 122 - . . scaffold1883 WUBlastX LINE_RTE-X 101369 101632 29 - . . scaffold1883 WUBlastX LINE_RTE-X 101384 101719 26 - . . scaffold1883 TRF Tandem_Repeat 101940 101979 62 + . . scaffold1883 WUBlastX LINE_RTE-X 104465 104542 22 + . . scaffold1883 WUBlastX LINE_RTE-X 104538 104942 43 + . . scaffold1883 WUBlastX LINE_RTE-X 104595 104669 46 + . . scaffold1883 WUBlastX LINE_RTE-X 104650 105318 24 + . . scaffold1883 WUBlastX LINE_RTE-X 105076 105318 40 + . . scaffold1883 WUBlastX LINE_RTE-X 105187 105438 28 + . . scaffold1883 TRF Tandem_Repeat 106420 106465 92 + . . scaffold1883 WUBlastX LINE_RTE-BovB 106794 106916 28 - . . scaffold1883 WUBlastX LINE_RTE-BovB 106830 106952 31 - . . scaffold1883 WUBlastX LINE_RTE-X 106863 106979 36 - . . scaffold1883 WUBlastX LINE_CR1 106993 107676 61 - . . scaffold1883 WUBlastX LINE_RTE-X 107017 107553 106 - . . scaffold1883 WUBlastX LINE_L1-Tx1 108423 108671 45 - . . scaffold1883 TRF Tandem_Repeat 108738 108804 80 + . . scaffold1883 WUBlastX LINE_RTE-X 109014 109082 26 - . . scaffold1883 TRF Tandem_Repeat 113453 113788 353 + . . scaffold1883 TRF Tandem_Repeat 117890 117936 94 + . . scaffold1883 GLEAN promoter 118486 119485 0.776794 + . ID=CGI_10011546; scaffold1883 GLEAN mRNA 119486 120052 0.776794 + . ID=CGI_10011546; scaffold1883 WUBlastX DNA_Harbinger 121663 122028 237 - . . scaffold1883 WUBlastX LTR_Gypsy 122380 123129 106 - . . scaffold1883 WUBlastX LTR_Gypsy 122494 123006 178 - . . scaffold1883 WUBlastX LTR_Gypsy-Cigr 123026 124630 453 - . . scaffold1883 WUBlastX LTR_Gypsy-Cigr 124638 125252 535 - . . scaffold1883 WUBlastX LTR_Gypsy 125255 125737 40 - . . scaffold1883 WUBlastX LTR_Gypsy 125282 125479 44 - . . scaffold1883 WUBlastX LTR_Gypsy 125820 126110 73 - . . scaffold1883 WUBlastX LTR_Gypsy 125823 126287 38 - . . scaffold1883 WUBlastX LTR_Gypsy 125826 126191 65 - . . scaffold1883 WUBlastX LTR_Gypsy 126332 126940 63 - . . scaffold1883 WUBlastX LINE_L2 129679 130230 204 - . . scaffold1883 WUBlastX LINE_L1 129703 130467 61 - . . scaffold1883 WUBlastX LINE_CR1-L2 129751 130326 122 - . . scaffold1883 WUBlastX LINE_L1 144220 144450 35 - . . scaffold1883 WUBlastX LINE_L1-Tx1 144310 145356 478 - . . scaffold1883 TRF Tandem_Repeat 146244 146282 69 + . . scaffold1883 GLEAN promoter 151783 152782 0.998274 + . ID=CGI_10011547; scaffold1883 GLEAN mRNA 152783 155735 0.998274 + . ID=CGI_10011547; scaffold1883 GLEAN promoter 156245 157244 0.67363 + . ID=CGI_10011548; scaffold1883 GLEAN mRNA 157245 162473 0.67363 + . ID=CGI_10011548; scaffold1883 GLEAN mRNA 166215 166811 0.999661 - . ID=CGI_10011549; scaffold1883 GLEAN promoter 166812 167811 0.999661 - . ID=CGI_10011549; scaffold1883 TRF Tandem_Repeat 176625 176651 54 + . . scaffold1883 GLEAN promoter 188287 189286 0.999999 + . ID=CGI_10011550; scaffold1883 GLEAN mRNA 189287 190210 0.999999 + . ID=CGI_10011550; scaffold1883 TRF Tandem_Repeat 192394 192452 118 + . . scaffold1883 TRF Tandem_Repeat 193413 193440 56 + . . scaffold1883 TRF Tandem_Repeat 193626 193676 50 + . . scaffold1883 TRF Tandem_Repeat 193633 193676 54 + . . scaffold1883 WUBlastX LINE_RTE-X 193853 196123 786 - . . scaffold1883 WUBlastX LINE_L2 196564 196605 21 - . . scaffold1883 TRF Tandem_Repeat 228941 229099 270 + . . scaffold1883 TRF Tandem_Repeat 228941 229099 243 + . . scaffold1883 TRF Tandem_Repeat 237887 238404 231 + . . scaffold1883 TRF Tandem_Repeat 237892 238228 277 + . . scaffold1883 TRF Tandem_Repeat 237892 238262 253 + . . scaffold1883 TRF Tandem_Repeat 237898 238228 183 + . . scaffold1883 TRF Tandem_Repeat 248192 248225 68 + . . scaffold1883 TRF Tandem_Repeat 253093 253117 50 + . . scaffold1883 TRF Tandem_Repeat 274516 274576 122 + . . scaffold1883 TRF Tandem_Repeat 276166 276215 100 + . . scaffold1883 TRF Tandem_Repeat 284656 284801 134 + . . scaffold1883 TRF Tandem_Repeat 285628 285767 138 + . . scaffold1884 GLEAN promoter 161 1160 1 + . ID=CGI_10012005; scaffold1884 GLEAN mRNA 1161 16382 1 + . ID=CGI_10012005; scaffold1884 TRF Tandem_Repeat 6227 7307 1600 + . . scaffold1884 TRF Tandem_Repeat 7891 8166 216 + . . scaffold1884 TRF Tandem_Repeat 7895 8310 478 + . . scaffold1884 TRF Tandem_Repeat 10414 10465 104 + . . scaffold1884 TRF Tandem_Repeat 10730 10760 62 + . . scaffold1884 TRF Tandem_Repeat 11312 11644 420 + . . scaffold1884 TRF Tandem_Repeat 12294 12745 715 + . . scaffold1884 TRF Tandem_Repeat 13358 14037 1096 + . . scaffold1884 GLEAN mRNA 17991 22167 1 - . ID=CGI_10012006; scaffold1884 WUBlastX LTR_Gypsy 18057 18293 29 - . . scaffold1884 TRF Tandem_Repeat 19062 20721 2071 + . . scaffold1884 WUBlastX LTR_Gypsy 20896 21189 49 - . . scaffold1884 GLEAN promoter 22168 23167 1 - . ID=CGI_10012006; scaffold1884 TRF Tandem_Repeat 22937 22969 66 + . . scaffold1884 GLEAN promoter 24801 25800 0.998982 + . ID=CGI_10012007; scaffold1884 GLEAN mRNA 25801 27519 0.998982 + . ID=CGI_10012007; scaffold1884 TRF Tandem_Repeat 32107 32156 57 + . . scaffold1884 GLEAN mRNA 33208 35112 1 - . ID=CGI_10012008; scaffold1884 WUBlastX LTR_Gypsy 33702 33941 20 - . . scaffold1884 GLEAN promoter 35113 36112 1 - . ID=CGI_10012008; scaffold1884 TRF Tandem_Repeat 37734 37900 307 + . . scaffold1884 GLEAN promoter 40768 41767 0.962257 + . ID=CGI_10012009; scaffold1884 GLEAN mRNA 41768 70838 0.962257 + . ID=CGI_10012009; scaffold1884 TRF Tandem_Repeat 53654 54544 717 + . . scaffold1884 TRF Tandem_Repeat 53654 54513 643 + . . scaffold1884 TRF Tandem_Repeat 53661 54513 667 + . . scaffold1884 TRF Tandem_Repeat 59702 59727 52 + . . scaffold1884 TRF Tandem_Repeat 62575 62616 50 + . . scaffold1884 TRF Tandem_Repeat 69957 70217 271 + . . scaffold1884 TRF Tandem_Repeat 79830 79875 92 + . . scaffold1884 TRF Tandem_Repeat 82994 84118 1559 + . . scaffold1884 GLEAN promoter 86279 87278 0.970109 + . ID=CGI_10012010; scaffold1884 TRF Tandem_Repeat 86290 86316 54 + . . scaffold1884 GLEAN mRNA 87279 96074 0.970109 + . ID=CGI_10012010; scaffold1884 TRF Tandem_Repeat 88372 89088 582 + . . scaffold1884 TRF Tandem_Repeat 88372 89088 691 + . . scaffold1884 TRF Tandem_Repeat 89877 89930 99 + . . scaffold1884 TRF Tandem_Repeat 93545 93595 102 + . . scaffold1884 TRF Tandem_Repeat 97291 97414 196 + . . scaffold1884 TRF Tandem_Repeat 98385 98780 371 + . . scaffold1884 TRF Tandem_Repeat 98385 98780 397 + . . scaffold1884 TRF Tandem_Repeat 98385 98631 329 + . . scaffold1884 TRF Tandem_Repeat 98623 98782 180 + . . scaffold1884 TRF Tandem_Repeat 100128 100173 92 + . . scaffold1884 GLEAN promoter 108636 109635 1 + . ID=CGI_10012011; scaffold1884 GLEAN mRNA 109636 115023 1 + . ID=CGI_10012011; scaffold1884 TRF Tandem_Repeat 109737 110197 366 + . . scaffold1884 TRF Tandem_Repeat 109737 110191 463 + . . scaffold1884 GLEAN mRNA 116820 120277 0.528032 - . ID=CGI_10012012; scaffold1884 TRF Tandem_Repeat 118404 118767 440 + . . scaffold1884 TRF Tandem_Repeat 118669 118765 50 + . . scaffold1884 TRF Tandem_Repeat 120013 120066 108 + . . scaffold1884 GLEAN promoter 120278 121277 0.528032 - . ID=CGI_10012012; scaffold1884 WUBlastX DNA_TcMar-Tc1 124077 124418 128 + . . scaffold1884 WUBlastX DNA_TcMar-Tc1 124173 124550 82 + . . scaffold1884 GLEAN mRNA 127868 129544 0.996819 - . ID=CGI_10012013; scaffold1884 GLEAN promoter 129545 130544 0.996819 - . ID=CGI_10012013; scaffold1884 TRF Tandem_Repeat 131588 131682 120 + . . scaffold1884 GLEAN promoter 132392 133391 0.998261 + . ID=CGI_10012014; scaffold1884 GLEAN mRNA 133392 150395 0.998261 + . ID=CGI_10012014; scaffold1884 TRF Tandem_Repeat 134835 134941 196 + . . scaffold1884 TRF Tandem_Repeat 137422 137574 306 + . . scaffold1884 WUBlastX LINE_RTE-BovB 141281 141418 59 - . . scaffold1884 WUBlastX LINE_RTE-BovB 141424 142677 897 - . . scaffold1884 WUBlastX LINE_RTE-BovB 142658 143488 643 - . . scaffold1884 WUBlastX LINE_CR1-L2 143027 143593 49 - . . scaffold1884 GLEAN promoter 149856 150855 1 + . ID=CGI_10012015; scaffold1884 GLEAN mRNA 150856 154438 1 + . ID=CGI_10012015; scaffold1884 TRF Tandem_Repeat 156015 156189 167 + . . scaffold1884 TRF Tandem_Repeat 161206 161256 93 + . . scaffold1884 TRF Tandem_Repeat 175273 175349 145 + . . scaffold1884 GLEAN promoter 175912 176911 0.584528 + . ID=CGI_10012016; scaffold1884 GLEAN mRNA 176912 198523 0.584528 + . ID=CGI_10012016; scaffold1884 TRF Tandem_Repeat 191141 191183 86 + . . scaffold1884 TRF Tandem_Repeat 191400 192177 378 + . . scaffold1884 TRF Tandem_Repeat 191420 191914 458 + . . scaffold1884 TRF Tandem_Repeat 191494 192149 380 + . . scaffold1884 TRF Tandem_Repeat 192735 194481 2254 + . . scaffold1884 TRF Tandem_Repeat 194965 195011 94 + . . scaffold1884 GLEAN mRNA 202247 224098 0.558382 - . ID=CGI_10012017; scaffold1884 GLEAN promoter 224099 225098 0.558382 - . ID=CGI_10012017; scaffold1884 TRF Tandem_Repeat 240650 240694 90 + . . scaffold1884 TRF Tandem_Repeat 243336 243367 64 + . . scaffold1884 TRF Tandem_Repeat 257541 257576 72 + . . scaffold1884 TRF Tandem_Repeat 261044 261074 53 + . . scaffold1884 GLEAN mRNA 272415 273314 0.917848 - . ID=CGI_10012018; scaffold1884 GLEAN promoter 273315 274314 0.917848 - . ID=CGI_10012018; scaffold1884 TRF Tandem_Repeat 274635 274690 112 + . . scaffold1884 TRF Tandem_Repeat 280647 280791 193 + . . scaffold1884 WUBlastX LINE_CR1-L2 280835 281089 26 - . . scaffold1884 WUBlastX LINE_CR1-L2 280886 281152 53 - . . scaffold1884 TRF Tandem_Repeat 282673 282740 136 + . . scaffold1884 GLEAN mRNA 285225 299677 0.999413 - . ID=CGI_10012019; scaffold1884 GLEAN promoter 299678 300677 0.999413 - . ID=CGI_10012019; scaffold1884 WUBlastX LINE_LOA 302765 302824 20 - . . scaffold1884 WUBlastX LINE_RTE-X 303363 305552 704 - . . scaffold1884 TRF Tandem_Repeat 306161 306420 238 + . . scaffold1885 GLEAN promoter 1 782 0.999821 + . ID=CGI_10013895; scaffold1885 GLEAN mRNA 783 3641 0.999821 + . ID=CGI_10013895; scaffold1885 WUBlastX LTR_Gypsy 7606 7902 107 - . . scaffold1885 WUBlastX LTR_Gypsy 7675 7995 91 - . . scaffold1885 WUBlastX LTR_Gypsy 7696 7911 128 - . . scaffold1885 WUBlastX LTR_Gypsy 7998 8186 23 - . . scaffold1885 TRF Tandem_Repeat 11705 11743 78 + . . scaffold1885 TRF Tandem_Repeat 17595 17948 618 + . . scaffold1885 TRF Tandem_Repeat 18794 18833 80 + . . scaffold1885 TRF Tandem_Repeat 18867 18925 118 + . . scaffold1885 TRF Tandem_Repeat 24046 24082 74 + . . scaffold1885 TRF Tandem_Repeat 42448 42499 95 + . . scaffold1885 TRF Tandem_Repeat 48631 48674 88 + . . scaffold1885 WUBlastX LINE_L1-Tx1 50457 50558 38 - . . scaffold1885 GLEAN mRNA 53319 68524 1 - . ID=CGI_10013896; scaffold1885 TRF Tandem_Repeat 64233 64427 108 + . . scaffold1885 TRF Tandem_Repeat 67277 67365 81 + . . scaffold1885 GLEAN promoter 68525 69524 1 - . ID=CGI_10013896; scaffold1885 GLEAN promoter 74698 75697 0.53129 + . ID=CGI_10013897; scaffold1885 GLEAN mRNA 75698 76510 0.53129 + . ID=CGI_10013897; scaffold1885 TRF Tandem_Repeat 90018 90073 55 + . . scaffold1885 WUBlastX DNA_Crypton 99545 100498 69 - . . scaffold1885 WUBlastX DNA_Crypton 99551 100135 87 - . . scaffold1885 TRF Tandem_Repeat 109744 109774 62 + . . scaffold1885 GLEAN mRNA 111510 119560 0.999552 - . ID=CGI_10013898; scaffold1885 WUBlastX LINE_Penelope 112924 113115 55 - . . scaffold1885 GLEAN promoter 119561 120560 0.999552 - . ID=CGI_10013898; scaffold1885 TRF Tandem_Repeat 140019 140052 50 + . . scaffold1885 TRF Tandem_Repeat 146996 147044 73 + . . scaffold1885 WUBlastX LTR_Gypsy 159555 160244 206 - . . scaffold1885 WUBlastX LTR_Gypsy 159663 162239 1672 - . . scaffold1885 WUBlastX DNA_Helitron 162788 163708 309 - . . scaffold1885 GLEAN promoter 178659 179658 0.970343 + . ID=CGI_10013899; scaffold1885 TRF Tandem_Repeat 179465 179574 139 + . . scaffold1885 TRF Tandem_Repeat 179465 179574 184 + . . scaffold1885 GLEAN mRNA 179659 183461 0.970343 + . ID=CGI_10013899; scaffold1885 TRF Tandem_Repeat 181826 182744 984 + . . scaffold1885 TRF Tandem_Repeat 184659 185675 1160 + . . scaffold1885 TRF Tandem_Repeat 188380 189251 850 + . . scaffold1885 WUBlastX LTR_Gypsy 193749 194063 119 + . . scaffold1885 WUBlastX LTR_Gypsy 193806 194060 130 + . . scaffold1885 WUBlastX LTR_Gypsy 193966 196128 437 + . . scaffold1885 WUBlastX LTR_Gypsy 194320 197694 2068 + . . scaffold1885 WUBlastX LTR_ERVK 197656 197709 23 + . . scaffold1885 WUBlastX DNA_Kolobok 199020 199145 50 - . . scaffold1885 WUBlastX DNA_PiggyBac 203859 204434 68 - . . scaffold1885 WUBlastX DNA_PiggyBac 203964 204398 154 - . . scaffold1885 WUBlastX DNA_PiggyBac 204030 204419 203 - . . scaffold1885 WUBlastX DNA_PiggyBac 205418 205879 48 - . . scaffold1885 WUBlastX DNA_PiggyBac 205433 205816 137 - . . scaffold1885 WUBlastX DNA_PiggyBac 205496 205816 204 - . . scaffold1885 WUBlastX DNA_PiggyBac 205936 206046 25 - . . scaffold1885 WUBlastX DNA_PiggyBac 205957 206037 45 - . . scaffold1885 WUBlastX DNA_PiggyBac 205978 206076 51 - . . scaffold1885 WUBlastX DNA_PiggyBac 206522 206716 38 - . . scaffold1885 WUBlastX DNA_PiggyBac 206525 206671 40 - . . scaffold1885 WUBlastX DNA_Merlin 209258 209656 211 - . . scaffold1885 WUBlastX DNA_Merlin 209653 209745 50 - . . scaffold1885 WUBlastX DNA_Merlin 209671 209742 64 - . . scaffold1885 TRF Tandem_Repeat 209914 210661 898 + . . scaffold1885 WUBlastX DNA_Merlin 212438 212806 100 - . . scaffold1885 TRF Tandem_Repeat 213244 213387 143 + . . scaffold1885 TRF Tandem_Repeat 221646 221699 99 + . . scaffold1885 GLEAN mRNA 221917 222096 0.617997 - . ID=CGI_10013900; scaffold1885 GLEAN promoter 222097 223096 0.617997 - . ID=CGI_10013900; scaffold1885 GLEAN mRNA 223317 226121 0.497126 - . ID=CGI_10013901; scaffold1885 GLEAN promoter 226122 227121 0.497126 - . ID=CGI_10013901; scaffold1885 TRF Tandem_Repeat 228294 228538 454 + . . scaffold1885 TRF Tandem_Repeat 228353 228420 50 + . . scaffold1885 TRF Tandem_Repeat 228736 229005 513 + . . scaffold1885 TRF Tandem_Repeat 232577 233472 986 + . . scaffold1885 WUBlastX LTR_Gypsy 237458 238141 20 + . . scaffold1885 WUBlastX LTR_Gypsy 237467 237994 42 + . . scaffold1885 WUBlastX LTR_Gypsy 237527 237838 69 + . . scaffold1885 WUBlastX LTR_Gypsy 238226 238366 29 + . . scaffold1885 WUBlastX LTR_Gypsy 238253 238429 68 + . . scaffold1885 WUBlastX LTR_Gypsy 238538 238852 140 + . . scaffold1885 WUBlastX LTR_Gypsy 238765 239190 208 + . . scaffold1885 WUBlastX LTR_Gypsy 238864 239193 261 + . . scaffold1885 WUBlastX LTR_Gypsy 238876 239493 26 + . . scaffold1885 WUBlastX LTR_Gypsy 238882 239280 243 + . . scaffold1885 WUBlastX LTR_Gypsy 239637 240230 196 - . . scaffold1885 WUBlastX LTR_Gypsy 240116 240778 219 - . . scaffold1885 WUBlastX LTR_Gypsy 240233 240838 568 - . . scaffold1885 WUBlastX LTR_Gypsy 240847 242778 1465 - . . scaffold1885 WUBlastX LTR_Gypsy 242828 243535 234 - . . scaffold1885 WUBlastX LTR_Gypsy 243308 243592 33 - . . scaffold1885 WUBlastX LTR_Gypsy 243844 243939 42 + . . scaffold1885 TRF Tandem_Repeat 248374 248526 121 + . . scaffold1885 TRF Tandem_Repeat 250266 250922 648 + . . scaffold1885 GLEAN mRNA 250354 256225 0.997372 - . ID=CGI_10013902; scaffold1885 TRF Tandem_Repeat 252407 252834 395 + . . scaffold1885 TRF Tandem_Repeat 252505 252956 417 + . . scaffold1885 GLEAN promoter 256226 257225 0.997372 - . ID=CGI_10013902; scaffold1885 GLEAN promoter 258176 259175 0.258057 + . ID=CGI_10013903; scaffold1885 WUBlastX DNA_IS4EU 259059 259376 86 + . . scaffold1885 GLEAN mRNA 259176 276402 0.258057 + . ID=CGI_10013903; scaffold1885 TRF Tandem_Repeat 261215 261268 90 + . . scaffold1885 TRF Tandem_Repeat 262725 262766 84 + . . scaffold1885 TRF Tandem_Repeat 282082 282141 120 + . . scaffold1885 TRF Tandem_Repeat 282309 282369 104 + . . scaffold1885 TRF Tandem_Repeat 283225 283314 85 + . . scaffold1885 WUBlastX LINE_CR1-L2 284832 285236 31 + . . scaffold1885 WUBlastX LINE_RTE-X 284925 285350 176 + . . scaffold1885 WUBlastX LINE_L2 285315 285380 20 + . . scaffold1885 WUBlastX LINE_Rex-Babar 285737 286102 43 + . . scaffold1885 WUBlastX LINE_RTE-X 285836 286102 76 + . . scaffold1885 WUBlastX LINE_RTE-X 286108 286299 110 + . . scaffold1885 WUBlastX LINE_RTE-X 286295 286567 148 + . . scaffold1885 WUBlastX LINE_RTE-X 286310 286645 79 + . . scaffold1885 WUBlastX LINE_RTE-X 286674 287633 41 + . . scaffold1885 WUBlastX LINE_RTE-X 286695 287051 178 + . . scaffold1885 WUBlastX LINE_RTE-X 287117 287419 64 + . . scaffold1885 WUBlastX LINE_L2 291198 291671 51 - . . scaffold1885 WUBlastX LINE_CR1-L2 291285 291716 64 - . . scaffold1885 WUBlastX LINE_L2 291718 292302 261 - . . scaffold1885 WUBlastX LINE_CR1 292341 292487 53 - . . scaffold1885 WUBlastX LINE_CR1 292341 292538 37 - . . scaffold1885 WUBlastX LINE_L2 292966 293193 27 - . . scaffold1885 WUBlastX LINE_L2 293366 293575 69 - . . scaffold1885 WUBlastX LINE_CR1-L2 293405 293545 70 - . . scaffold1885 WUBlastX LINE_CR1-L2 293560 293859 122 - . . scaffold1885 WUBlastX LINE_L2 293620 293862 166 - . . scaffold1885 WUBlastX LINE_CR1 293620 293910 109 - . . scaffold1885 WUBlastX LINE_CR1-L2 293913 294269 97 - . . scaffold1885 GLEAN promoter 294291 295290 0.999938 + . ID=CGI_10013904; scaffold1885 GLEAN mRNA 295291 300552 0.999938 + . ID=CGI_10013904; scaffold1885 TRF Tandem_Repeat 297334 297374 50 + . . scaffold1885 TRF Tandem_Repeat 297334 297374 50 + . . scaffold1885 TRF Tandem_Repeat 302912 302958 85 + . . scaffold1885 TRF Tandem_Repeat 311670 311759 53 + . . scaffold1885 TRF Tandem_Repeat 312426 312474 98 + . . scaffold1885 TRF Tandem_Repeat 313046 313103 116 + . . scaffold1885 TRF Tandem_Repeat 313359 313391 66 + . . scaffold1885 TRF Tandem_Repeat 316542 316591 82 + . . scaffold1885 TRF Tandem_Repeat 318253 318431 71 + . . scaffold1885 TRF Tandem_Repeat 324172 324224 106 + . . scaffold1885 TRF Tandem_Repeat 331605 331673 138 + . . scaffold1885 TRF Tandem_Repeat 332364 332413 75 + . . scaffold1885 TRF Tandem_Repeat 332674 332722 98 + . . scaffold1885 TRF Tandem_Repeat 334460 334590 74 + . . scaffold1885 WUBlastX DNA_Kolobok-IS4 338559 338888 49 + . . scaffold1885 WUBlastX DNA_IS4EU 338586 338960 36 + . . scaffold1885 WUBlastX DNA_P 338607 338819 52 + . . scaffold1885 WUBlastX DNA_IS4EU 339374 340357 435 + . . scaffold1885 WUBlastX DNA_IS4EU 341223 341798 196 - . . scaffold1885 WUBlastX DNA_IS4EU 342404 342700 49 - . . scaffold1885 TRF Tandem_Repeat 345187 346105 1328 + . . scaffold1885 TRF Tandem_Repeat 347183 347232 100 + . . scaffold1885 TRF Tandem_Repeat 348142 348186 90 + . . scaffold1885 TRF Tandem_Repeat 348368 348406 78 + . . scaffold1885 GLEAN promoter 349853 350852 0.999501 + . ID=CGI_10013905; scaffold1885 GLEAN mRNA 350853 371060 0.999501 + . ID=CGI_10013905; scaffold1885 TRF Tandem_Repeat 359032 359075 61 + . . scaffold1885 WUBlastX LINE_I 359858 359956 28 - . . scaffold1885 WUBlastX LINE_L2 360051 360518 103 - . . scaffold1885 WUBlastX LINE_CR1-L2 360174 360518 169 - . . scaffold1885 WUBlastX LINE_CR1-L2 360515 360745 75 - . . scaffold1885 WUBlastX LINE_L1 364632 364898 104 + . . scaffold1885 WUBlastX LINE_L1-Tx1 364698 365309 154 + . . scaffold1885 WUBlastX LINE_L1-Tx1 364710 365627 124 + . . scaffold1885 TRF Tandem_Repeat 369874 369917 52 + . . scaffold1885 TRF Tandem_Repeat 372531 372572 84 + . . scaffold1886 GLEAN promoter 1 457 0.999949 + . ID=CGI_10012882; scaffold1886 GLEAN mRNA 458 15872 0.999949 + . ID=CGI_10012882; scaffold1886 TRF Tandem_Repeat 10488 10529 84 + . . scaffold1886 GLEAN mRNA 17280 27320 0.814151 - . ID=CGI_10012883; scaffold1886 GLEAN promoter 27321 28320 0.814151 - . ID=CGI_10012883; scaffold1886 GLEAN mRNA 30282 60445 0.330102 - . ID=CGI_10012884; scaffold1886 TRF Tandem_Repeat 32349 32401 69 + . . scaffold1886 GLEAN promoter 60446 61445 0.330102 - . ID=CGI_10012884; scaffold1886 TRF Tandem_Repeat 63933 63974 84 + . . scaffold1886 GLEAN mRNA 71684 102109 0.651112 - . ID=CGI_10012885; scaffold1886 TRF Tandem_Repeat 84688 84730 86 + . . scaffold1886 TRF Tandem_Repeat 85351 85388 76 + . . scaffold1886 TRF Tandem_Repeat 89411 89481 133 + . . scaffold1886 TRF Tandem_Repeat 92983 93032 100 + . . scaffold1886 GLEAN promoter 102110 103109 0.651112 - . ID=CGI_10012885; scaffold1886 TRF Tandem_Repeat 103028 103058 62 + . . scaffold1886 GLEAN mRNA 103288 104796 0.593095 - . ID=CGI_10012886; scaffold1886 WUBlastX DNA_Kolobok-IS4 104024 104191 38 - . . scaffold1886 WUBlastX DNA_Kolobok-IS4 104275 104700 66 - . . scaffold1886 GLEAN promoter 104797 105796 0.593095 - . ID=CGI_10012886; scaffold1886 TRF Tandem_Repeat 113036 113098 126 + . . scaffold1886 TRF Tandem_Repeat 114586 114625 80 + . . scaffold1886 TRF Tandem_Repeat 116299 116335 74 + . . scaffold1886 TRF Tandem_Repeat 141520 141583 128 + . . scaffold1886 TRF Tandem_Repeat 141951 142053 138 + . . scaffold1886 WUBlastX LINE_RTE-X 142795 144720 800 - . . scaffold1886 WUBlastX LINE_CR1 143407 145083 196 - . . scaffold1886 GLEAN promoter 144113 145112 1 + . ID=CGI_10012887; scaffold1886 GLEAN mRNA 145113 146792 1 + . ID=CGI_10012887; scaffold1886 TRF Tandem_Repeat 146930 146972 77 + . . scaffold1886 TRF Tandem_Repeat 147500 147539 80 + . . scaffold1886 GLEAN promoter 149500 150499 0.999949 + . ID=CGI_10012888; scaffold1886 GLEAN mRNA 150500 157441 0.999949 + . ID=CGI_10012888; scaffold1886 GLEAN promoter 157853 158852 0.983346 + . ID=CGI_10012889; scaffold1886 GLEAN mRNA 158853 165714 0.983346 + . ID=CGI_10012889; scaffold1886 WUBlastX DNA_PiggyBac 174109 174369 77 - . . scaffold1886 WUBlastX DNA_PiggyBac 174142 174339 106 - . . scaffold1886 WUBlastX DNA_PiggyBac 175229 175384 43 - . . scaffold1886 WUBlastX DNA_PiggyBac 176002 176106 26 - . . scaffold1886 WUBlastX DNA_PiggyBac 176903 177007 59 - . . scaffold1886 WUBlastX DNA_PiggyBac 176957 177040 22 - . . scaffold1886 WUBlastX DNA_PiggyBac 177219 177626 103 - . . scaffold1886 GLEAN promoter 178785 179784 1 + . ID=CGI_10012890; scaffold1886 GLEAN mRNA 179785 180231 1 + . ID=CGI_10012890; scaffold1886 TRF Tandem_Repeat 180775 180848 148 + . . scaffold1886 GLEAN mRNA 187092 192406 0.801618 - . ID=CGI_10012891; scaffold1886 GLEAN promoter 192407 193406 0.801618 - . ID=CGI_10012891; scaffold1886 TRF Tandem_Repeat 192607 192631 50 + . . scaffold1886 TRF Tandem_Repeat 199642 199709 127 + . . scaffold1886 TRF Tandem_Repeat 207508 207554 94 + . . scaffold1886 TRF Tandem_Repeat 209283 209316 68 + . . scaffold1886 GLEAN promoter 229308 230307 0.898841 + . ID=CGI_10012892; scaffold1886 GLEAN mRNA 230308 243198 0.898841 + . ID=CGI_10012892; scaffold1886 TRF Tandem_Repeat 232277 232318 84 + . . scaffold1886 TRF Tandem_Repeat 239195 239243 98 + . . scaffold1886 GLEAN promoter 243911 244910 1 + . ID=CGI_10012893; scaffold1886 GLEAN mRNA 244911 252990 1 + . ID=CGI_10012893; scaffold1886 TRF Tandem_Repeat 250122 250159 60 + . . scaffold1886 GLEAN promoter 252794 253793 0.927436 + . ID=CGI_10012894; scaffold1886 GLEAN mRNA 253794 265550 0.927436 + . ID=CGI_10012894; scaffold1886 GLEAN promoter 275965 276964 0.529919 + . ID=CGI_10012895; scaffold1886 GLEAN mRNA 276965 283008 0.529919 + . ID=CGI_10012895; scaffold1886 GLEAN mRNA 286414 288219 0.999981 - . ID=CGI_10012896; scaffold1886 GLEAN promoter 288220 289219 0.999981 - . ID=CGI_10012896; scaffold1886 GLEAN promoter 290846 291845 1 + . ID=CGI_10012897; scaffold1886 GLEAN mRNA 291846 293021 1 + . ID=CGI_10012897; scaffold1886 GLEAN mRNA 293629 299303 0.712434 - . ID=CGI_10012898; scaffold1886 GLEAN promoter 299304 300303 0.712434 - . ID=CGI_10012898; scaffold1886 GLEAN promoter 300063 301062 1 + . ID=CGI_10012899; scaffold1886 GLEAN mRNA 301063 303120 1 + . ID=CGI_10012899; scaffold1886 GLEAN mRNA 303630 320585 0.999676 - . ID=CGI_10012900; scaffold1886 GLEAN promoter 306476 307475 1 + . ID=CGI_10012901; scaffold1886 GLEAN mRNA 307476 309252 1 + . ID=CGI_10012901; scaffold1886 GLEAN promoter 320495 321494 0.999661 + . ID=CGI_10012902; scaffold1886 GLEAN promoter 320586 321585 0.999676 - . ID=CGI_10012900; scaffold1886 GLEAN mRNA 321495 329419 0.999661 + . ID=CGI_10012902; scaffold1886 GLEAN promoter 337066 338065 0.836238 + . ID=CGI_10012903; scaffold1886 GLEAN mRNA 338066 338994 0.836238 + . ID=CGI_10012903; scaffold1886 TRF Tandem_Repeat 342144 342183 80 + . . scaffold1887 GLEAN promoter 19621 20620 0.998081 + . ID=CGI_10006621; scaffold1887 GLEAN mRNA 20621 34874 0.998081 + . ID=CGI_10006621; scaffold1887 GLEAN mRNA 37272 43003 0.893932 - . ID=CGI_10006622; scaffold1887 GLEAN promoter 43004 44003 0.893932 - . ID=CGI_10006622; scaffold1887 GLEAN mRNA 55353 79893 0.999676 - . ID=CGI_10006623; scaffold1887 GLEAN promoter 79894 80893 0.999676 - . ID=CGI_10006623; scaffold1888 TRF Tandem_Repeat 35993 36019 54 + . . scaffold1888 TRF Tandem_Repeat 36533 36576 88 + . . scaffold1888 GLEAN promoter 44528 45527 1 + . ID=CGI_10013291; scaffold1888 GLEAN mRNA 45528 49814 1 + . ID=CGI_10013291; scaffold1888 GLEAN promoter 48981 49980 0.998764 + . ID=CGI_10013292; scaffold1888 GLEAN mRNA 49981 53887 0.998764 + . ID=CGI_10013292; scaffold1888 WUBlastX DNA_TcMar-Pogo 51190 51564 60 + . . scaffold1888 WUBlastX DNA_TcMar-Pogo 51199 51414 90 + . . scaffold1888 WUBlastX DNA_TcMar-Pogo 51546 51641 34 + . . scaffold1888 WUBlastX DNA_TcMar-Tigge 51546 51608 43 + . . scaffold1888 WUBlastX DNA_TcMar-Pogo 51748 52623 340 + . . scaffold1888 TRF Tandem_Repeat 52334 52369 63 + . . scaffold1888 GLEAN promoter 52959 53958 1 + . ID=CGI_10013293; scaffold1888 GLEAN mRNA 53959 57886 1 + . ID=CGI_10013293; scaffold1888 GLEAN mRNA 59436 60581 0.999977 - . ID=CGI_10013294; scaffold1888 GLEAN promoter 60582 61581 0.999977 - . ID=CGI_10013294; scaffold1888 GLEAN mRNA 63277 86416 0.994729 - . ID=CGI_10013295; scaffold1888 TRF Tandem_Repeat 68198 68230 66 + . . scaffold1888 WUBlastX LINE_RTE-X 76443 77924 570 + . . scaffold1888 WUBlastX LINE_RTE-X 77295 78065 175 + . . scaffold1888 GLEAN promoter 86417 87416 0.994729 - . ID=CGI_10013295; scaffold1888 GLEAN mRNA 90001 109703 0.99883 - . ID=CGI_10013296; scaffold1888 TRF Tandem_Repeat 97157 97193 56 + . . scaffold1888 TRF Tandem_Repeat 98475 98506 55 + . . scaffold1888 TRF Tandem_Repeat 101992 102034 86 + . . scaffold1888 GLEAN promoter 109704 110703 0.99883 - . ID=CGI_10013296; scaffold1888 TRF Tandem_Repeat 110925 111004 160 + . . scaffold1888 GLEAN promoter 113572 114571 0.858074 + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 113827 113869 68 + . . scaffold1888 GLEAN mRNA 114572 148611 0.858074 + . ID=CGI_10013297; scaffold1888 TRF Tandem_Repeat 118399 118436 67 + . . scaffold1888 TRF Tandem_Repeat 125448 125521 148 + . . scaffold1888 GLEAN mRNA 127388 128451 0.679039 - . ID=CGI_10013298; scaffold1888 GLEAN promoter 128452 129451 0.679039 - . ID=CGI_10013298; scaffold1888 GLEAN mRNA 128558 138412 0.988459 - . ID=CGI_10013299; scaffold1888 TRF Tandem_Repeat 137231 137259 58 + . . scaffold1888 GLEAN promoter 138413 139412 0.988459 - . ID=CGI_10013299; scaffold1888 GLEAN mRNA 140411 140743 1 - . ID=CGI_10013300; scaffold1888 GLEAN promoter 140744 141743 1 - . ID=CGI_10013300; scaffold1888 TRF Tandem_Repeat 141280 141326 94 + . . scaffold1888 GLEAN mRNA 143399 144253 1 - . ID=CGI_10013301; scaffold1888 TRF Tandem_Repeat 143959 144008 100 + . . scaffold1888 GLEAN promoter 144254 145253 1 - . ID=CGI_10013301; scaffold1888 TRF Tandem_Repeat 146659 146690 64 + . . scaffold1888 WUBlastX DNA_hAT-hATw 147313 147651 27 + . . scaffold1888 WUBlastX LINE_L2 147517 147957 52 + . . scaffold1888 GLEAN mRNA 151221 151743 1 - . ID=CGI_10013302; scaffold1888 GLEAN promoter 151744 152743 1 - . ID=CGI_10013302; scaffold1888 WUBlastX LINE_RTE-X 152705 153001 56 + . . scaffold1888 TRF Tandem_Repeat 153383 153494 206 + . . scaffold1888 TRF Tandem_Repeat 177280 177363 105 + . . scaffold1888 TRF Tandem_Repeat 177455 177506 104 + . . scaffold1888 TRF Tandem_Repeat 186487 186554 91 + . . scaffold1888 TRF Tandem_Repeat 189468 189514 94 + . . scaffold1888 TRF Tandem_Repeat 191890 191925 72 + . . scaffold1888 GLEAN mRNA 192429 205129 0.958436 - . ID=CGI_10013303; scaffold1888 TRF Tandem_Repeat 192812 192852 82 + . . scaffold1888 TRF Tandem_Repeat 197725 198459 700 + . . scaffold1888 TRF Tandem_Repeat 198632 198674 56 + . . scaffold1888 GLEAN promoter 205130 206129 0.958436 - . ID=CGI_10013303; scaffold1888 TRF Tandem_Repeat 206343 206393 102 + . . scaffold1888 TRF Tandem_Repeat 209679 210021 456 + . . scaffold1888 TRF Tandem_Repeat 209687 210021 377 + . . scaffold1888 TRF Tandem_Repeat 210156 210193 76 + . . scaffold1888 WUBlastX DNA_IS4EU 225918 226475 234 + . . scaffold1888 WUBlastX DNA_IS4EU 226646 226777 60 + . . scaffold1888 WUBlastX DNA_IS4EU 226667 226840 98 + . . scaffold1888 WUBlastX DNA_IS4EU 227335 228321 171 + . . scaffold1888 WUBlastX DNA_IS4EU 227371 228036 227 + . . scaffold1888 WUBlastX DNA_IS4EU 234645 234860 32 - . . scaffold1888 GLEAN mRNA 249044 250183 0.796301 - . ID=CGI_10013305; scaffold1888 GLEAN promoter 250184 251183 0.796301 - . ID=CGI_10013305; scaffold1888 TRF Tandem_Repeat 255327 255426 161 + . . scaffold1888 TRF Tandem_Repeat 262432 262499 136 + . . scaffold1888 GLEAN mRNA 264438 271851 0.80359 - . ID=CGI_10013306; scaffold1888 TRF Tandem_Repeat 270291 270884 817 + . . scaffold1888 TRF Tandem_Repeat 270355 270884 806 + . . scaffold1888 GLEAN promoter 271852 272851 0.80359 - . ID=CGI_10013306; scaffold1888 TRF Tandem_Repeat 278636 278774 278 + . . scaffold1888 GLEAN promoter 282047 283046 0.43323 + . ID=CGI_10013307; scaffold1888 GLEAN mRNA 283047 290595 0.43323 + . ID=CGI_10013307; scaffold1888 TRF Tandem_Repeat 288585 289174 665 + . . scaffold1888 TRF Tandem_Repeat 292204 292242 62 + . . scaffold1888 TRF Tandem_Repeat 294073 294386 396 + . . scaffold1888 TRF Tandem_Repeat 294397 297201 2904 + . . scaffold1888 TRF Tandem_Repeat 297342 297446 63 + . . scaffold1888 TRF Tandem_Repeat 297343 297392 55 + . . scaffold1888 WUBlastX LINE_L2 297689 297949 23 + . . scaffold1888 WUBlastX LINE_CR1-L2 297734 297949 27 + . . scaffold1888 WUBlastX LINE_CR1-L2 297858 298181 49 + . . scaffold1888 WUBlastX LINE_L2 297954 298181 86 + . . scaffold1888 TRF Tandem_Repeat 298785 298833 71 + . . scaffold1888 TRF Tandem_Repeat 299056 299947 1016 + . . scaffold1888 TRF Tandem_Repeat 300152 302682 2378 + . . scaffold1888 GLEAN promoter 305493 306492 1 + . ID=CGI_10013308; scaffold1888 GLEAN mRNA 306493 307910 1 + . ID=CGI_10013308; scaffold1888 TRF Tandem_Repeat 310425 310744 559 + . . scaffold1888 TRF Tandem_Repeat 312029 312064 72 + . . scaffold1888 GLEAN mRNA 314412 314824 1 - . ID=CGI_10013309; scaffold1888 GLEAN promoter 314825 315824 1 - . ID=CGI_10013309; scaffold1888 TRF Tandem_Repeat 315789 315816 56 + . . scaffold1888 TRF Tandem_Repeat 320899 322191 1854 + . . scaffold1888 GLEAN mRNA 324390 329532 0.999437 - . ID=CGI_10013310; scaffold1888 TRF Tandem_Repeat 325332 325788 662 + . . scaffold1888 GLEAN promoter 329533 330532 0.999437 - . ID=CGI_10013310; scaffold1888 TRF Tandem_Repeat 330019 330089 63 + . . scaffold1888 WUBlastX DNA_hAT-Tip100 334445 334666 105 - . . scaffold1888 TRF Tandem_Repeat 335820 335851 64 + . . scaffold1888 TRF Tandem_Repeat 342014 342043 51 + . . scaffold1889 WUBlastX LTR_Gypsy 32046 32279 159 + . . scaffold1889 WUBlastX LTR_Gypsy 32218 32853 169 + . . scaffold1889 WUBlastX LTR_Gypsy-Cigr 32314 32853 338 + . . scaffold1889 WUBlastX LTR_Gypsy 32356 32943 218 + . . scaffold1889 WUBlastX LTR_Gypsy 32954 33493 354 + . . scaffold1889 WUBlastX LTR_Gypsy 33501 34034 298 + . . scaffold1889 WUBlastX LTR_Gypsy 33504 34145 191 + . . scaffold1889 WUBlastX LTR_Gypsy 34150 34359 81 + . . scaffold1889 WUBlastX LTR_Gypsy-Cigr 34150 34326 187 + . . scaffold1889 WUBlastX LTR_Gypsy 34382 34504 21 + . . scaffold1889 WUBlastX LTR_Gypsy 34409 34510 21 + . . scaffold1889 WUBlastX LTR_Gypsy 34430 34618 29 + . . scaffold1889 TRF Tandem_Repeat 36788 36873 118 + . . scaffold1889 TRF Tandem_Repeat 37627 37663 65 + . . scaffold1889 WUBlastX DNA_TcMar-Marin 46866 47246 150 - . . scaffold1889 WUBlastX DNA_TcMar-Marin 47469 48104 261 - . . scaffold1889 GLEAN mRNA 54792 57192 0.75806 - . ID=CGI_10019601; scaffold1889 GLEAN promoter 57193 58192 0.75806 - . ID=CGI_10019601; scaffold1889 WUBlastX LTR_Ngaro 59916 60101 61 - . . scaffold1889 WUBlastX LINE_L1-Tx1 61154 61378 40 - . . scaffold1889 TRF Tandem_Repeat 62723 64206 1436 + . . scaffold1889 TRF Tandem_Repeat 62768 64261 1201 + . . scaffold1889 TRF Tandem_Repeat 64490 64535 92 + . . scaffold1889 TRF Tandem_Repeat 65637 65769 214 + . . scaffold1889 TRF Tandem_Repeat 70791 71562 628 + . . scaffold1889 GLEAN mRNA 73173 88565 0.532708 - . ID=CGI_10019602; scaffold1889 TRF Tandem_Repeat 76079 76148 140 + . . scaffold1889 TRF Tandem_Repeat 76986 77028 86 + . . scaffold1889 TRF Tandem_Repeat 82938 82992 56 + . . scaffold1889 TRF Tandem_Repeat 84929 84978 64 + . . scaffold1889 GLEAN promoter 88566 89565 0.532708 - . ID=CGI_10019602; scaffold1889 TRF Tandem_Repeat 95779 95860 164 + . . scaffold1889 WUBlastX LINE_L1-Tx1 98777 99145 82 - . . scaffold1889 WUBlastX LINE_L1-Tx1 100708 101022 55 - . . scaffold1889 WUBlastX LINE_L1-Tx1 100750 101154 30 - . . scaffold1889 WUBlastX LINE_L1-Tx1 100786 101085 76 - . . scaffold1889 WUBlastX LINE_L1-Tx1 100792 101001 92 - . . scaffold1889 WUBlastX LINE_L1-Tx1 101222 101761 136 - . . scaffold1889 WUBlastX LINE_L1 101710 102117 28 - . . scaffold1889 WUBlastX LINE_L1-Tx1 101746 102051 114 - . . scaffold1889 GLEAN promoter 128521 129520 1 + . ID=CGI_10019603; scaffold1889 GLEAN mRNA 129521 129823 1 + . ID=CGI_10019603; scaffold1889 GLEAN mRNA 132633 135442 1 - . ID=CGI_10019604; scaffold1889 GLEAN promoter 135443 136442 1 - . ID=CGI_10019604; scaffold1889 GLEAN promoter 136497 137496 1 + . ID=CGI_10019605; scaffold1889 GLEAN mRNA 137497 147497 1 + . ID=CGI_10019605; scaffold1889 TRF Tandem_Repeat 149528 149567 80 + . . scaffold1889 GLEAN mRNA 152140 159235 0.499919 - . ID=CGI_10019606; scaffold1889 TRF Tandem_Repeat 157227 157278 104 + . . scaffold1889 GLEAN promoter 159236 160235 0.499919 - . ID=CGI_10019606; scaffold1889 TRF Tandem_Repeat 164129 164307 145 + . . scaffold1889 TRF Tandem_Repeat 164393 164488 111 + . . scaffold1889 GLEAN mRNA 168717 180210 0.977984 - . ID=CGI_10019607; scaffold1889 WUBlastX DNA_Academ 179864 181105 617 + . . scaffold1889 GLEAN promoter 180211 181210 0.977984 - . ID=CGI_10019607; scaffold1889 WUBlastX DNA_Academ 181084 181233 20 + . . scaffold1889 WUBlastX DNA_Academ 181093 181200 25 + . . scaffold1889 WUBlastX LINE_RTE-X 183917 184483 107 - . . scaffold1889 WUBlastX LINE_RTE-X 184046 184483 115 - . . scaffold1889 TRF Tandem_Repeat 187518 188043 516 + . . scaffold1889 WUBlastX LINE_CR1-L2 195656 196321 291 - . . scaffold1889 WUBlastX LINE_RTE-X 197334 197600 47 - . . scaffold1889 WUBlastX LINE_RTE-X 197334 197831 33 - . . scaffold1889 WUBlastX LINE_RTE-X 197427 197600 60 - . . scaffold1889 WUBlastX LINE_RTE-X 197433 197633 35 - . . scaffold1889 GLEAN mRNA 199666 208024 0.836613 - . ID=CGI_10019608; scaffold1889 TRF Tandem_Repeat 202020 202072 99 + . . scaffold1889 TRF Tandem_Repeat 203744 203808 130 + . . scaffold1889 GLEAN promoter 207254 208253 1 + . ID=CGI_10019609; scaffold1889 WUBlastX LINE_RTE-X 207440 207661 88 + . . scaffold1889 WUBlastX LINE_RTE-X 207443 207613 103 + . . scaffold1889 WUBlastX LINE_RTE-X 207443 207718 45 + . . scaffold1889 GLEAN promoter 208025 209024 0.836613 - . ID=CGI_10019608; scaffold1889 GLEAN mRNA 208254 211695 1 + . ID=CGI_10019609; scaffold1889 TRF Tandem_Repeat 210147 210359 336 + . . scaffold1889 GLEAN mRNA 219482 225454 0.990649 - . ID=CGI_10019610; scaffold1889 TRF Tandem_Repeat 219555 219610 112 + . . scaffold1889 GLEAN promoter 225455 226454 0.990649 - . ID=CGI_10019610; scaffold1889 TRF Tandem_Repeat 245096 245138 86 + . . scaffold1889 GLEAN mRNA 246450 269482 0.695758 - . ID=CGI_10019611; scaffold1889 TRF Tandem_Repeat 251121 251172 104 + . . scaffold1889 TRF Tandem_Repeat 262732 262770 64 + . . scaffold1889 GLEAN promoter 269483 270482 0.695758 - . ID=CGI_10019611; scaffold1889 TRF Tandem_Repeat 270242 270282 82 + . . scaffold1889 TRF Tandem_Repeat 270578 270619 57 + . . scaffold1889 TRF Tandem_Repeat 271924 271983 68 + . . scaffold1889 TRF Tandem_Repeat 271925 271982 61 + . . scaffold1889 TRF Tandem_Repeat 271925 271983 59 + . . scaffold1889 TRF Tandem_Repeat 273841 274075 386 + . . scaffold1889 GLEAN mRNA 282551 308226 0.64223 - . ID=CGI_10019612; scaffold1889 TRF Tandem_Repeat 288254 289088 1435 + . . scaffold1889 GLEAN promoter 302075 303074 0.618186 + . ID=CGI_10019613; scaffold1889 GLEAN mRNA 303075 303266 0.618186 + . ID=CGI_10019613; scaffold1889 GLEAN promoter 308227 309226 0.64223 - . ID=CGI_10019612; scaffold1889 TRF Tandem_Repeat 318220 318311 184 + . . scaffold1889 TRF Tandem_Repeat 319511 319719 293 + . . scaffold1889 GLEAN promoter 322907 323906 1 + . ID=CGI_10019614; scaffold1889 GLEAN mRNA 323907 326641 1 + . ID=CGI_10019614; scaffold1889 TRF Tandem_Repeat 334368 334407 80 + . . scaffold1889 TRF Tandem_Repeat 347093 347140 78 + . . scaffold1889 GLEAN mRNA 349006 349230 0.618182 - . ID=CGI_10019615; scaffold1889 GLEAN promoter 349231 350230 0.618182 - . ID=CGI_10019615; scaffold1889 GLEAN mRNA 356127 364951 0.88549 - . ID=CGI_10019616; scaffold1889 TRF Tandem_Repeat 361562 361628 80 + . . scaffold1889 GLEAN promoter 364952 365951 0.88549 - . ID=CGI_10019616; scaffold1889 WUBlastX LINE_L1-Tx1 364977 365174 74 + . . scaffold1889 WUBlastX LINE_L1-Tx1 365173 366387 135 + . . scaffold1889 GLEAN mRNA 371396 372517 0.9994 - . ID=CGI_10019617; scaffold1889 GLEAN promoter 372518 373517 0.9994 - . ID=CGI_10019617; scaffold1889 TRF Tandem_Repeat 377199 377262 128 + . . scaffold1889 TRF Tandem_Repeat 377738 377768 62 + . . scaffold1889 TRF Tandem_Repeat 401654 401710 114 + . . scaffold1889 TRF Tandem_Repeat 408969 409018 100 + . . scaffold1889 GLEAN promoter 419375 420374 0.99999 + . ID=CGI_10019618; scaffold1889 GLEAN mRNA 420375 422565 0.99999 + . ID=CGI_10019618; scaffold1889 TRF Tandem_Repeat 443606 443726 206 + . . scaffold1889 GLEAN promoter 444142 445141 0.543444 + . ID=CGI_10019619; scaffold1889 GLEAN mRNA 445142 454268 0.543444 + . ID=CGI_10019619; scaffold1889 TRF Tandem_Repeat 449479 449727 158 + . . scaffold1889 GLEAN promoter 454027 455026 0.741709 + . ID=CGI_10019620; scaffold1889 GLEAN mRNA 455027 469823 0.741709 + . ID=CGI_10019620; scaffold1889 TRF Tandem_Repeat 460242 460998 807 + . . scaffold1889 TRF Tandem_Repeat 462084 462156 58 + . . scaffold1889 TRF Tandem_Repeat 462709 462821 100 + . . scaffold1889 TRF Tandem_Repeat 472480 472518 78 + . . scaffold1889 GLEAN mRNA 475143 489179 0.763475 - . ID=CGI_10019621; scaffold1889 TRF Tandem_Repeat 481349 481546 288 + . . scaffold1889 GLEAN promoter 489180 490179 0.763475 - . ID=CGI_10019621; scaffold1889 GLEAN promoter 494203 495202 1 + . ID=CGI_10019622; scaffold1889 GLEAN mRNA 495203 496552 1 + . ID=CGI_10019622; scaffold1889 TRF Tandem_Repeat 495348 495744 179 + . . scaffold1889 GLEAN mRNA 501897 505207 0.592974 - . ID=CGI_10019623; scaffold1889 GLEAN promoter 505063 506062 0.999395 + . ID=CGI_10019624; scaffold1889 GLEAN promoter 505208 506207 0.592974 - . ID=CGI_10019623; scaffold1889 GLEAN mRNA 506063 509863 0.999395 + . ID=CGI_10019624; scaffold1889 GLEAN promoter 510186 511185 0.998908 + . ID=CGI_10019626; scaffold1889 GLEAN mRNA 511147 522426 0.995755 - . ID=CGI_10019625; scaffold1889 GLEAN mRNA 511186 513641 0.998908 + . ID=CGI_10019626; scaffold1889 TRF Tandem_Repeat 514737 515027 449 + . . scaffold1889 TRF Tandem_Repeat 514738 514829 62 + . . scaffold1889 GLEAN promoter 522427 523426 0.995755 - . ID=CGI_10019625; scaffold1889 TRF Tandem_Repeat 526507 526532 52 + . . scaffold1889 WUBlastX LINE_Penelope 540876 541001 73 - . . scaffold1889 WUBlastX LINE_L1 547585 548379 80 - . . scaffold1889 WUBlastX LINE_L1-Tx1 547726 548418 216 - . . scaffold1889 WUBlastX LINE_L1 547921 548379 304 - . . scaffold1889 WUBlastX LINE_L1 547924 548490 226 - . . scaffold1889 WUBlastX LINE_L1 548484 548807 55 - . . scaffold1889 WUBlastX LINE_L1 548779 548925 69 - . . scaffold1889 WUBlastX LINE_L1 548779 548976 62 - . . scaffold1889 WUBlastX LINE_L1-Tx1 549159 549455 48 - . . scaffold1889 WUBlastX LINE_L1-Tx1 549300 549494 56 - . . scaffold1889 WUBlastX LINE_L1-Tx1 549488 549856 43 - . . scaffold1889 WUBlastX LINE_L1-Tx1 549611 549958 33 - . . scaffold1889 WUBlastX LINE_L1-Tx1 549614 549856 112 - . . scaffold1889 GLEAN promoter 551014 552013 0.660887 + . ID=CGI_10019627; scaffold1889 GLEAN mRNA 552014 558963 0.660887 + . ID=CGI_10019627; scaffold1889 TRF Tandem_Repeat 554565 554596 55 + . . scaffold1889 GLEAN promoter 561057 562056 0.990088 + . ID=CGI_10019628; scaffold1889 GLEAN mRNA 562057 574839 0.990088 + . ID=CGI_10019628; scaffold1889 WUBlastX LINE_CR1 568307 568744 141 + . . scaffold1889 GLEAN promoter 574360 575359 0.990074 + . ID=CGI_10019629; scaffold1889 GLEAN mRNA 575360 587358 0.990074 + . ID=CGI_10019629; scaffold1889 TRF Tandem_Repeat 599366 599395 60 + . . scaffold1889 TRF Tandem_Repeat 605022 605084 105 + . . scaffold1889 TRF Tandem_Repeat 606185 606245 113 + . . scaffold189 WUBlastX LINE_L1-Tx1 2236 2529 30 - . . scaffold189 WUBlastX LINE_L1-Tx1 2308 2529 34 - . . scaffold189 GLEAN promoter 15396 16395 0.48054 + . ID=CGI_10018663; scaffold189 TRF Tandem_Repeat 15846 16010 178 + . . scaffold189 GLEAN mRNA 16396 38520 0.48054 + . ID=CGI_10018663; scaffold189 TRF Tandem_Repeat 29585 29712 103 + . . scaffold189 GLEAN mRNA 31485 31709 0.618186 - . ID=CGI_10018664; scaffold189 GLEAN promoter 31710 32709 0.618186 - . ID=CGI_10018664; scaffold189 WUBlastX LTR_Gypsy 35207 37165 1241 - . . scaffold189 WUBlastX LTR_Gypsy 36819 37382 200 - . . scaffold189 WUBlastX LTR_Gypsy 37230 37436 85 - . . scaffold189 WUBlastX LTR_Ngaro 37439 37531 61 - . . scaffold189 WUBlastX LTR_DIRS 40267 40524 86 + . . scaffold189 WUBlastX LTR_DIRS 41176 41457 118 + . . scaffold189 WUBlastX LTR_DIRS 41182 41415 120 + . . scaffold189 TRF Tandem_Repeat 42160 42217 107 + . . scaffold189 TRF Tandem_Repeat 46819 46885 127 + . . scaffold189 TRF Tandem_Repeat 47457 47504 87 + . . scaffold189 GLEAN promoter 52564 53563 1 + . ID=CGI_10018665; scaffold189 GLEAN mRNA 53564 54257 1 + . ID=CGI_10018665; scaffold189 TRF Tandem_Repeat 55672 55783 109 + . . scaffold189 GLEAN promoter 57436 58435 1 + . ID=CGI_10018666; scaffold189 GLEAN mRNA 58436 59417 1 + . ID=CGI_10018666; scaffold189 GLEAN mRNA 59975 61893 0.999995 - . ID=CGI_10018667; scaffold189 GLEAN promoter 61894 62893 0.999995 - . ID=CGI_10018667; scaffold189 TRF Tandem_Repeat 63674 63958 399 + . . scaffold189 TRF Tandem_Repeat 64167 64767 746 + . . scaffold189 TRF Tandem_Repeat 66880 66911 64 + . . scaffold189 GLEAN mRNA 68249 75941 1 - . ID=CGI_10018668; scaffold189 TRF Tandem_Repeat 74827 74875 98 + . . scaffold189 GLEAN promoter 75942 76941 1 - . ID=CGI_10018668; scaffold189 GLEAN mRNA 79630 86162 0.835223 - . ID=CGI_10018669; scaffold189 TRF Tandem_Repeat 85166 85209 61 + . . scaffold189 TRF Tandem_Repeat 85332 85371 80 + . . scaffold189 GLEAN promoter 86163 87162 0.835223 - . ID=CGI_10018669; scaffold189 TRF Tandem_Repeat 86242 86288 94 + . . scaffold189 GLEAN promoter 95670 96669 0.92996 + . ID=CGI_10018670; scaffold189 GLEAN mRNA 96670 115133 0.92996 + . ID=CGI_10018670; scaffold189 TRF Tandem_Repeat 105440 105464 50 + . . scaffold189 TRF Tandem_Repeat 107717 107911 306 + . . scaffold189 TRF Tandem_Repeat 108473 108639 141 + . . scaffold189 TRF Tandem_Repeat 111809 112058 358 + . . scaffold189 GLEAN mRNA 119109 122728 1 - . ID=CGI_10018671; scaffold189 TRF Tandem_Repeat 120503 120527 50 + . . scaffold189 TRF Tandem_Repeat 122104 122146 86 + . . scaffold189 GLEAN promoter 122729 123728 1 - . ID=CGI_10018671; scaffold189 TRF Tandem_Repeat 124482 124525 88 + . . scaffold189 GLEAN promoter 125248 126247 0.997328 + . ID=CGI_10018672; scaffold189 GLEAN mRNA 126248 127039 0.997328 + . ID=CGI_10018672; scaffold189 TRF Tandem_Repeat 129023 129067 90 + . . scaffold189 TRF Tandem_Repeat 130484 130756 261 + . . scaffold189 TRF Tandem_Repeat 130484 130756 262 + . . scaffold189 TRF Tandem_Repeat 130484 130756 280 + . . scaffold189 WUBlastX LINE_L1 133843 134025 51 - . . scaffold189 WUBlastX LINE_L1-Tx1 137727 137930 62 - . . scaffold189 TRF Tandem_Repeat 139421 139463 59 + . . scaffold189 TRF Tandem_Repeat 142269 143092 998 + . . scaffold189 GLEAN promoter 143293 144292 0.509953 + . ID=CGI_10018673; scaffold189 GLEAN mRNA 144293 145942 0.509953 + . ID=CGI_10018673; scaffold189 TRF Tandem_Repeat 147748 148149 516 + . . scaffold189 GLEAN promoter 149883 150882 0.998932 + . ID=CGI_10018674; scaffold189 GLEAN mRNA 150883 154484 0.998932 + . ID=CGI_10018674; scaffold189 TRF Tandem_Repeat 154970 155036 71 + . . scaffold189 TRF Tandem_Repeat 157315 157365 66 + . . scaffold189 TRF Tandem_Repeat 157363 157400 58 + . . scaffold189 TRF Tandem_Repeat 157909 157975 80 + . . scaffold189 GLEAN mRNA 162558 220166 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 167022 167070 98 + . . scaffold189 TRF Tandem_Repeat 167125 167155 53 + . . scaffold189 TRF Tandem_Repeat 169769 169852 55 + . . scaffold189 TRF Tandem_Repeat 171184 171857 1024 + . . scaffold189 TRF Tandem_Repeat 173884 173916 66 + . . scaffold189 TRF Tandem_Repeat 173914 173969 103 + . . scaffold189 TRF Tandem_Repeat 177833 179002 1528 + . . scaffold189 TRF Tandem_Repeat 179248 179780 484 + . . scaffold189 TRF Tandem_Repeat 179283 179778 364 + . . scaffold189 TRF Tandem_Repeat 180264 180289 52 + . . scaffold189 TRF Tandem_Repeat 182303 182868 250 + . . scaffold189 TRF Tandem_Repeat 185306 186491 1723 + . . scaffold189 WUBlastX LTR_Gypsy 188764 192702 3249 + . . scaffold189 WUBlastX LTR_Gypsy 192625 192759 35 + . . scaffold189 TRF Tandem_Repeat 197680 197727 96 + . . scaffold189 WUBlastX LINE_L1-Tx1 203566 203964 27 - . . scaffold189 TRF Tandem_Repeat 206353 206394 50 + . . scaffold189 TRF Tandem_Repeat 207119 207166 96 + . . scaffold189 TRF Tandem_Repeat 209686 209836 74 + . . scaffold189 TRF Tandem_Repeat 210148 210453 488 + . . scaffold189 TRF Tandem_Repeat 213585 214601 824 + . . scaffold189 TRF Tandem_Repeat 215815 216786 1155 + . . scaffold189 TRF Tandem_Repeat 216491 216649 70 + . . scaffold189 GLEAN promoter 220167 221166 0.999165 - . ID=CGI_10018675; scaffold189 TRF Tandem_Repeat 221340 221644 479 + . . scaffold189 GLEAN mRNA 222719 227373 0.920201 - . ID=CGI_10018677; scaffold189 GLEAN promoter 227374 228373 0.920201 - . ID=CGI_10018677; scaffold189 TRF Tandem_Repeat 239272 239327 112 + . . scaffold189 TRF Tandem_Repeat 255530 255916 398 + . . scaffold189 TRF Tandem_Repeat 255530 255916 517 + . . scaffold189 TRF Tandem_Repeat 256561 256841 287 + . . scaffold189 TRF Tandem_Repeat 256561 256840 372 + . . scaffold189 TRF Tandem_Repeat 263202 263240 78 + . . scaffold189 GLEAN mRNA 267708 287240 0.326204 - . ID=CGI_10018678; scaffold189 TRF Tandem_Repeat 269197 269940 1224 + . . scaffold189 TRF Tandem_Repeat 278651 280208 1849 + . . scaffold189 TRF Tandem_Repeat 278722 280208 1843 + . . scaffold189 GLEAN promoter 287241 288240 0.326204 - . ID=CGI_10018678; scaffold189 GLEAN mRNA 288581 303162 0.800167 - . ID=CGI_10018679; scaffold189 GLEAN promoter 303163 304162 0.800167 - . ID=CGI_10018679; scaffold189 TRF Tandem_Repeat 307402 307441 80 + . . scaffold189 WUBlastX LINE_RTE-BovB 311817 312413 82 - . . scaffold189 WUBlastX LINE_RTE-BovB 311853 312329 82 - . . scaffold189 WUBlastX LINE_RTE-BovB 311983 312606 23 - . . scaffold189 GLEAN promoter 314964 315963 0.999676 + . ID=CGI_10018680; scaffold189 GLEAN mRNA 315964 323962 0.999676 + . ID=CGI_10018680; scaffold189 TRF Tandem_Repeat 337697 337752 112 + . . scaffold189 TRF Tandem_Repeat 357720 357762 54 + . . scaffold189 TRF Tandem_Repeat 361121 361190 140 + . . scaffold189 WUBlastX DNA_Crypton 368992 369672 237 + . . scaffold189 WUBlastX DNA_Crypton 369794 369868 26 + . . scaffold189 WUBlastX DNA_Crypton 369955 370311 98 + . . scaffold189 WUBlastX LINE_L2 374080 374814 163 - . . scaffold189 WUBlastX LINE_L2 374095 374664 174 - . . scaffold189 WUBlastX LINE_RTE-X 379445 379873 128 + . . scaffold189 WUBlastX LINE_RTE-X 379535 379873 164 + . . scaffold189 WUBlastX LINE_RTE-X 379869 380618 175 + . . scaffold189 TRF Tandem_Repeat 385476 385557 96 + . . scaffold189 TRF Tandem_Repeat 385476 385566 73 + . . scaffold189 TRF Tandem_Repeat 387232 387310 63 + . . scaffold189 GLEAN mRNA 391211 393095 1 - . ID=CGI_10018682; scaffold189 GLEAN promoter 393096 394095 1 - . ID=CGI_10018682; scaffold189 TRF Tandem_Repeat 398262 398288 54 + . . scaffold189 TRF Tandem_Repeat 400581 400873 478 + . . scaffold189 TRF Tandem_Repeat 400581 400873 221 + . . scaffold189 TRF Tandem_Repeat 400581 400873 271 + . . scaffold189 WUBlastX LINE_L1-Tx1 402923 403735 64 - . . scaffold189 WUBlastX LINE_L1-Tx1 403064 403717 134 - . . scaffold189 WUBlastX LINE_L1-Tx1 403747 403929 98 - . . scaffold189 WUBlastX LINE_L1-Tx1 403898 404401 40 - . . scaffold189 WUBlastX LINE_L1 404045 404371 73 - . . scaffold189 WUBlastX LINE_L1-Tx1 404045 404527 44 - . . scaffold189 WUBlastX LINE_L1 404506 404661 46 - . . scaffold189 WUBlastX LINE_L1 404580 404927 66 - . . scaffold189 WUBlastX LINE_L1-Tx1 404688 404909 93 - . . scaffold189 WUBlastX LINE_CR1 406833 406970 22 - . . scaffold189 GLEAN promoter 411161 412160 0.996547 + . ID=CGI_10018683; scaffold189 GLEAN mRNA 412161 448705 0.996547 + . ID=CGI_10018683; scaffold189 TRF Tandem_Repeat 427395 427446 79 + . . scaffold189 TRF Tandem_Repeat 442536 442595 84 + . . scaffold189 GLEAN promoter 455834 456833 0.879297 + . ID=CGI_10018684; scaffold189 GLEAN mRNA 456834 488246 0.879297 + . ID=CGI_10018684; scaffold189 TRF Tandem_Repeat 464617 464680 83 + . . scaffold189 TRF Tandem_Repeat 476916 476979 128 + . . scaffold189 TRF Tandem_Repeat 478828 479245 297 + . . scaffold189 TRF Tandem_Repeat 478834 479262 149 + . . scaffold189 TRF Tandem_Repeat 485039 485780 994 + . . scaffold189 GLEAN mRNA 492897 505367 0.989016 - . ID=CGI_10018685; scaffold189 TRF Tandem_Repeat 497513 498604 1832 + . . scaffold189 TRF Tandem_Repeat 499768 499807 80 + . . scaffold189 TRF Tandem_Repeat 500507 500538 64 + . . scaffold189 GLEAN promoter 505090 506089 0.215488 + . ID=CGI_10018686; scaffold189 GLEAN promoter 505368 506367 0.989016 - . ID=CGI_10018685; scaffold189 GLEAN mRNA 506090 522885 0.215488 + . ID=CGI_10018686; scaffold189 TRF Tandem_Repeat 517069 517183 212 + . . scaffold189 TRF Tandem_Repeat 520594 520933 515 + . . scaffold189 GLEAN mRNA 530483 533300 1 - . ID=CGI_10018687; scaffold189 GLEAN promoter 533301 534300 1 - . ID=CGI_10018687; scaffold189 WUBlastX LTR_Gypsy 537812 539020 973 + . . scaffold189 WUBlastX LTR_Gypsy 537827 539248 894 + . . scaffold189 WUBlastX LINE_L2 540312 540470 30 + . . scaffold189 WUBlastX LINE_CR1-L2 540484 540789 39 + . . scaffold189 WUBlastX LINE_L2 540535 540834 59 + . . scaffold189 WUBlastX LINE_L2 541104 541151 26 + . . scaffold189 WUBlastX LINE_L2 542944 543159 57 + . . scaffold189 WUBlastX LINE_L2 543037 543156 94 + . . scaffold189 WUBlastX LINE_CR1-L2 543159 543386 89 + . . scaffold189 WUBlastX LINE_L2 543159 543329 91 + . . scaffold189 WUBlastX LINE_L2 543171 543455 30 + . . scaffold189 WUBlastX LINE_L2 544144 544230 25 + . . scaffold189 TRF Tandem_Repeat 545357 545425 138 + . . scaffold189 WUBlastX LINE_Penelope 546560 547039 107 - . . scaffold189 GLEAN mRNA 558983 560204 1 - . ID=CGI_10018688; scaffold189 TRF Tandem_Repeat 559160 559190 62 + . . scaffold189 GLEAN promoter 560205 561204 1 - . ID=CGI_10018688; scaffold189 TRF Tandem_Repeat 563660 563692 57 + . . scaffold1890 WUBlastX LINE_L1 385 1020 81 - . . scaffold1890 WUBlastX LINE_L1 496 1113 21 - . . scaffold1890 TRF Tandem_Repeat 5146 5210 130 + . . scaffold1890 WUBlastX DNA_Sola 15737 16066 58 + . . scaffold1890 WUBlastX DNA_Sola 15770 16027 70 + . . scaffold1890 WUBlastX DNA_Sola 15782 16552 36 + . . scaffold1890 WUBlastX DNA_Sola 16364 16516 61 + . . scaffold1890 WUBlastX DNA_Sola 16409 16567 46 + . . scaffold1890 TRF Tandem_Repeat 19543 19600 80 + . . scaffold1890 GLEAN mRNA 37839 43637 0.921078 - . ID=CGI_10012121; scaffold1890 TRF Tandem_Repeat 38265 38300 72 + . . scaffold1890 TRF Tandem_Repeat 38300 38346 67 + . . scaffold1890 TRF Tandem_Repeat 41170 41229 120 + . . scaffold1890 GLEAN promoter 43638 44637 0.921078 - . ID=CGI_10012121; scaffold1890 TRF Tandem_Repeat 45126 45177 50 + . . scaffold1890 GLEAN mRNA 47850 50095 0.593391 - . ID=CGI_10012122; scaffold1890 TRF Tandem_Repeat 48995 49059 130 + . . scaffold1890 GLEAN promoter 50096 51095 0.593391 - . ID=CGI_10012122; scaffold1890 GLEAN mRNA 51904 53802 0.999996 - . ID=CGI_10012123; scaffold1890 GLEAN promoter 53803 54802 0.999996 - . ID=CGI_10012123; scaffold1890 WUBlastX LINE_RTE-X 58887 60500 118 - . . scaffold1890 WUBlastX LINE_RTE-X 59337 60590 176 - . . scaffold1890 WUBlastX LINE_CR1-L2 59991 60515 182 - . . scaffold1890 WUBlastX LINE_L1 60123 60677 107 - . . scaffold1890 TRF Tandem_Repeat 77132 77246 221 + . . scaffold1890 TRF Tandem_Repeat 80017 80043 54 + . . scaffold1890 GLEAN mRNA 80950 85851 0.928972 - . ID=CGI_10012124; scaffold1890 GLEAN promoter 85852 86851 0.928972 - . ID=CGI_10012124; scaffold1890 TRF Tandem_Repeat 86095 86127 66 + . . scaffold1890 GLEAN promoter 87112 88111 0.696329 + . ID=CGI_10012125; scaffold1890 GLEAN mRNA 88112 95514 0.696329 + . ID=CGI_10012125; scaffold1890 TRF Tandem_Repeat 98092 98332 144 + . . scaffold1890 TRF Tandem_Repeat 98683 98887 263 + . . scaffold1890 GLEAN mRNA 98892 116547 0.999174 - . ID=CGI_10012126; scaffold1890 TRF Tandem_Repeat 112265 112492 375 + . . scaffold1890 GLEAN promoter 116548 117547 0.999174 - . ID=CGI_10012126; scaffold1890 GLEAN promoter 118798 119797 0.999999 + . ID=CGI_10012127; scaffold1890 GLEAN mRNA 119798 129877 0.999999 + . ID=CGI_10012127; scaffold1890 GLEAN mRNA 129506 144243 0.956303 - . ID=CGI_10012128; scaffold1890 GLEAN promoter 144244 145243 0.956303 - . ID=CGI_10012128; scaffold1890 WUBlastX DNA_TcMar-Tc1 145320 145691 62 + . . scaffold1890 WUBlastX DNA_TcMar-Tc1 145427 145978 113 + . . scaffold1890 WUBlastX DNA_TcMar-Tc1 145547 146065 183 + . . scaffold1890 WUBlastX DNA_TcMar-Tc1 146020 146352 156 + . . scaffold1890 TRF Tandem_Repeat 146578 146787 271 + . . scaffold1890 GLEAN mRNA 147231 220367 0.344946 - . ID=CGI_10012129; scaffold1890 TRF Tandem_Repeat 154129 154521 299 + . . scaffold1890 TRF Tandem_Repeat 176707 176942 286 + . . scaffold1890 TRF Tandem_Repeat 177930 178135 162 + . . scaffold1890 TRF Tandem_Repeat 177977 178166 308 + . . scaffold1890 TRF Tandem_Repeat 179323 179530 253 + . . scaffold1890 TRF Tandem_Repeat 184259 184672 398 + . . scaffold1890 TRF Tandem_Repeat 196539 196837 467 + . . scaffold1890 TRF Tandem_Repeat 203052 203111 120 + . . scaffold1890 GLEAN promoter 207689 208688 1 + . ID=CGI_10012130; scaffold1890 GLEAN mRNA 208689 213667 1 + . ID=CGI_10012130; scaffold1890 TRF Tandem_Repeat 216020 216057 76 + . . scaffold1890 TRF Tandem_Repeat 218116 218536 797 + . . scaffold1890 GLEAN promoter 220368 221367 0.344946 - . ID=CGI_10012129; scaffold1890 WUBlastX LINE_RTE-X 226332 226433 41 + . . scaffold1890 WUBlastX LINE_RTE-X 226430 226573 37 + . . scaffold1890 TRF Tandem_Repeat 227896 227964 102 + . . scaffold1890 GLEAN mRNA 239468 245402 1 - . ID=CGI_10012131; scaffold1890 GLEAN promoter 245403 246402 1 - . ID=CGI_10012131; scaffold1890 GLEAN mRNA 246484 273183 0.992025 - . ID=CGI_10012132; scaffold1890 TRF Tandem_Repeat 259894 259919 52 + . . scaffold1890 TRF Tandem_Repeat 269047 269217 199 + . . scaffold1890 TRF Tandem_Repeat 270509 270739 183 + . . scaffold1890 GLEAN promoter 273184 274183 0.992025 - . ID=CGI_10012132; scaffold1890 TRF Tandem_Repeat 273286 273334 98 + . . scaffold1890 GLEAN mRNA 280616 282630 0.999929 - . ID=CGI_10012133; scaffold1890 TRF Tandem_Repeat 282090 282131 52 + . . scaffold1890 GLEAN mRNA 282630 287825 0.934668 - . ID=CGI_10012134; scaffold1890 GLEAN promoter 282631 283630 0.999929 - . ID=CGI_10012133; scaffold1890 TRF Tandem_Repeat 283196 283248 63 + . . scaffold1890 GLEAN promoter 287826 288825 0.934668 - . ID=CGI_10012134; scaffold1890 GLEAN mRNA 288914 309902 0.999976 - . ID=CGI_10012135; scaffold1890 TRF Tandem_Repeat 292389 292525 229 + . . scaffold1890 TRF Tandem_Repeat 292411 292551 138 + . . scaffold1890 TRF Tandem_Repeat 299808 299843 72 + . . scaffold1890 TRF Tandem_Repeat 302684 302726 77 + . . scaffold1890 TRF Tandem_Repeat 305912 305972 51 + . . scaffold1890 GLEAN promoter 309903 310462 0.999976 - . ID=CGI_10012135; scaffold1890 TRF Tandem_Repeat 310155 310188 68 + . . scaffold1891 GLEAN mRNA 2612 4874 1 - . ID=CGI_10008723; scaffold1891 GLEAN promoter 4875 5874 1 - . ID=CGI_10008723; scaffold1891 GLEAN mRNA 8398 10542 0.997902 - . ID=CGI_10008724; scaffold1891 GLEAN promoter 10543 11542 0.997902 - . ID=CGI_10008724; scaffold1891 GLEAN mRNA 11652 43542 0.693936 - . ID=CGI_10008725; scaffold1891 GLEAN promoter 11973 12972 0.533053 + . ID=CGI_10008726; scaffold1891 GLEAN mRNA 12973 16881 0.533053 + . ID=CGI_10008726; scaffold1891 TRF Tandem_Repeat 21162 21268 51 + . . scaffold1891 TRF Tandem_Repeat 21301 21379 59 + . . scaffold1891 TRF Tandem_Repeat 23956 23997 84 + . . scaffold1891 TRF Tandem_Repeat 38993 39018 52 + . . scaffold1891 GLEAN promoter 43543 44542 0.693936 - . ID=CGI_10008725; scaffold1891 TRF Tandem_Repeat 46289 46318 60 + . . scaffold1891 GLEAN mRNA 55180 55392 0.999999 - . ID=CGI_10008727; scaffold1891 GLEAN promoter 55393 56392 0.999999 - . ID=CGI_10008727; scaffold1891 GLEAN promoter 55893 56892 1 + . ID=CGI_10008728; scaffold1891 GLEAN mRNA 56893 66090 1 + . ID=CGI_10008728; scaffold1891 GLEAN promoter 65431 66430 1 + . ID=CGI_10008730; scaffold1891 GLEAN mRNA 65989 87089 0.855644 - . ID=CGI_10008729; scaffold1891 GLEAN mRNA 66431 76028 1 + . ID=CGI_10008730; scaffold1891 TRF Tandem_Repeat 66509 66556 60 + . . scaffold1891 GLEAN promoter 82085 83084 0.996815 + . ID=CGI_10008731; scaffold1891 GLEAN mRNA 83085 86867 0.996815 + . ID=CGI_10008731; scaffold1891 GLEAN promoter 86116 87115 0.650973 + . ID=CGI_10008732; scaffold1891 GLEAN promoter 87090 88089 0.855644 - . ID=CGI_10008729; scaffold1891 GLEAN mRNA 87116 92379 0.650973 + . ID=CGI_10008732; scaffold1891 GLEAN mRNA 88815 90875 1 - . ID=CGI_10008733; scaffold1891 GLEAN promoter 90876 91875 1 - . ID=CGI_10008733; scaffold1891 TRF Tandem_Repeat 92407 92457 84 + . . scaffold1891 TRF Tandem_Repeat 94082 94134 63 + . . scaffold1891 TRF Tandem_Repeat 94082 94134 56 + . . scaffold1891 TRF Tandem_Repeat 94502 94569 73 + . . scaffold1891 TRF Tandem_Repeat 94502 94561 93 + . . scaffold1891 TRF Tandem_Repeat 94511 94570 84 + . . scaffold1891 GLEAN promoter 98950 99949 0.647502 + . ID=CGI_10008734; scaffold1891 GLEAN mRNA 99950 103024 0.647502 + . ID=CGI_10008734; scaffold1891 WUBlastX DNA_Crypton 101558 101884 44 - . . scaffold1891 WUBlastX DNA_Academ 104057 104257 81 + . . scaffold1891 WUBlastX RC_Helitron 112304 112765 93 + . . scaffold1891 WUBlastX RC_Helitron 112568 113023 89 + . . scaffold1891 WUBlastX RC_Helitron 113110 113301 24 + . . scaffold1891 GLEAN mRNA 116622 117119 0.709511 - . ID=CGI_10008735; scaffold1891 GLEAN promoter 117120 118119 0.709511 - . ID=CGI_10008735; scaffold1891 GLEAN mRNA 121503 130465 0.378664 - . ID=CGI_10008736; scaffold1891 TRF Tandem_Repeat 128496 128545 79 + . . scaffold1891 GLEAN promoter 130466 131465 0.378664 - . ID=CGI_10008736; scaffold1891 GLEAN mRNA 133537 158573 0.499706 - . ID=CGI_10008737; scaffold1891 TRF Tandem_Repeat 137682 137707 52 + . . scaffold1891 TRF Tandem_Repeat 139788 139880 71 + . . scaffold1891 TRF Tandem_Repeat 142896 142939 88 + . . scaffold1891 TRF Tandem_Repeat 143386 143437 104 + . . scaffold1891 WUBlastX DNA_Harbinger 147032 147193 58 + . . scaffold1891 WUBlastX DNA_Harbinger 150618 150716 27 - . . scaffold1891 WUBlastX DNA_Harbinger 150850 151023 123 - . . scaffold1891 WUBlastX DNA_Harbinger 151086 151211 29 - . . scaffold1891 WUBlastX DNA_Harbinger 151116 151211 46 - . . scaffold1891 WUBlastX DNA_Harbinger 151134 151250 47 - . . scaffold1891 TRF Tandem_Repeat 151332 151397 132 + . . scaffold1891 WUBlastX DNA_Harbinger 151411 151569 37 - . . scaffold1891 WUBlastX DNA_Harbinger 151432 151554 75 - . . scaffold1891 WUBlastX DNA_Harbinger 152059 152469 88 - . . scaffold1891 WUBlastX DNA_Harbinger 152089 152433 129 - . . scaffold1891 TRF Tandem_Repeat 155345 155399 110 + . . scaffold1891 TRF Tandem_Repeat 157020 157079 120 + . . scaffold1891 TRF Tandem_Repeat 157705 157736 64 + . . scaffold1891 GLEAN promoter 157733 158732 0.698794 + . ID=CGI_10008739; scaffold1891 GLEAN promoter 158574 159573 0.499706 - . ID=CGI_10008737; scaffold1891 GLEAN mRNA 158733 164459 0.698794 + . ID=CGI_10008739; scaffold1891 GLEAN mRNA 164688 165074 0.999997 - . ID=CGI_10008740; scaffold1891 GLEAN promoter 165075 166074 0.999997 - . ID=CGI_10008740; scaffold1891 WUBlastX LTR_Copia 165379 165429 21 - . . scaffold1891 WUBlastX LTR_Gypsy 165451 165633 22 - . . scaffold1891 WUBlastX LTR_Gypsy 165547 165666 28 - . . scaffold1891 WUBlastX LTR_Gypsy 165586 165651 38 - . . scaffold1891 WUBlastX LTR_Gypsy 165633 169208 1983 - . . scaffold1891 WUBlastX LTR_Gypsy-Cigr 165633 168368 2035 - . . scaffold1891 WUBlastX LTR_Gypsy 167421 169775 594 - . . scaffold1891 WUBlastX LTR_Gypsy 169440 170153 32 - . . scaffold1891 WUBlastX LTR_Gypsy-Cigr 169476 170015 165 - . . scaffold1891 GLEAN promoter 172067 173066 0.776067 + . ID=CGI_10008741; scaffold1891 GLEAN mRNA 173067 174669 0.776067 + . ID=CGI_10008741; scaffold1891 GLEAN promoter 174477 175476 0.997258 + . ID=CGI_10008742; scaffold1891 GLEAN mRNA 175477 178471 0.997258 + . ID=CGI_10008742; scaffold1891 WUBlastX LINE_L2 179285 179800 82 - . . scaffold1891 TRF Tandem_Repeat 183774 183857 60 + . . scaffold1891 TRF Tandem_Repeat 193194 193313 231 + . . scaffold1891 TRF Tandem_Repeat 194397 194428 64 + . . scaffold1891 WUBlastX DNA_TcMar-Marin 195645 195809 24 + . . scaffold1891 WUBlastX DNA_TcMar-Tc1 195675 195938 67 + . . scaffold1891 WUBlastX DNA_TcMar-Tc1 195705 195920 72 + . . scaffold1891 WUBlastX DNA_TcMar-Tc1 195934 196677 135 + . . scaffold1891 GLEAN promoter 196028 197027 1 + . ID=CGI_10008743; scaffold1891 WUBlastX DNA_TcMar-Tc1 196031 196342 200 + . . scaffold1891 GLEAN mRNA 197028 198128 1 + . ID=CGI_10008743; scaffold1891 GLEAN promoter 197986 198985 0.497732 + . ID=CGI_10008744; scaffold1891 GLEAN mRNA 198986 203331 0.497732 + . ID=CGI_10008744; scaffold1891 GLEAN promoter 203247 204246 0.999999 + . ID=CGI_10008745; scaffold1891 GLEAN promoter 204244 205243 1 + . ID=CGI_10008746; scaffold1891 GLEAN mRNA 204247 204881 0.999999 + . ID=CGI_10008745; scaffold1891 GLEAN mRNA 205244 206410 1 + . ID=CGI_10008746; scaffold1891 GLEAN promoter 206257 207256 1 + . ID=CGI_10008747; scaffold1891 GLEAN mRNA 207257 209210 1 + . ID=CGI_10008747; scaffold1891 GLEAN promoter 210557 211556 1 + . ID=CGI_10008748; scaffold1891 GLEAN mRNA 211557 215391 1 + . ID=CGI_10008748; scaffold1892 GLEAN mRNA 1199 1726 0.997493 - . ID=CGI_10011303; scaffold1892 GLEAN promoter 1727 2726 0.997493 - . ID=CGI_10011303; scaffold1892 TRF Tandem_Repeat 3716 3747 55 + . . scaffold1892 WUBlastX LINE_RTE-X 9038 9211 27 + . . scaffold1892 GLEAN mRNA 11800 12330 0.393691 - . ID=CGI_10011304; scaffold1892 GLEAN promoter 12331 13330 0.393691 - . ID=CGI_10011304; scaffold1892 GLEAN mRNA 30429 33530 1 - . ID=CGI_10011305; scaffold1892 WUBlastX DNA_hAT-Ac 32923 33015 98 + . . scaffold1892 GLEAN promoter 33531 34530 1 - . ID=CGI_10011305; scaffold1892 GLEAN promoter 35735 36734 1 + . ID=CGI_10011306; scaffold1892 GLEAN mRNA 36735 42787 1 + . ID=CGI_10011306; scaffold1892 GLEAN mRNA 47698 50108 0.999676 - . ID=CGI_10011307; scaffold1892 GLEAN promoter 50109 51108 0.999676 - . ID=CGI_10011307; scaffold1892 GLEAN mRNA 55917 66955 0.998064 - . ID=CGI_10011308; scaffold1892 GLEAN promoter 66956 67955 0.998064 - . ID=CGI_10011308; scaffold1892 GLEAN mRNA 69323 82567 0.999989 - . ID=CGI_10011309; scaffold1892 TRF Tandem_Repeat 73028 73101 78 + . . scaffold1892 TRF Tandem_Repeat 73028 73112 59 + . . scaffold1892 TRF Tandem_Repeat 73029 73103 66 + . . scaffold1892 TRF Tandem_Repeat 81431 81478 96 + . . scaffold1892 GLEAN promoter 82568 83567 0.999989 - . ID=CGI_10011309; scaffold1892 TRF Tandem_Repeat 83916 84512 616 + . . scaffold1892 TRF Tandem_Repeat 83917 84512 588 + . . scaffold1892 GLEAN promoter 86020 87019 0.691643 + . ID=CGI_10011310; scaffold1892 GLEAN mRNA 87020 91353 0.691643 + . ID=CGI_10011310; scaffold1892 TRF Tandem_Repeat 91602 91634 50 + . . scaffold1892 GLEAN mRNA 95386 98031 0.99999 - . ID=CGI_10011311; scaffold1892 GLEAN promoter 98032 99031 0.99999 - . ID=CGI_10011311; scaffold1892 TRF Tandem_Repeat 111748 111976 303 + . . scaffold1892 WUBlastX LINE_L1 112846 113394 44 + . . scaffold1892 WUBlastX LINE_L1-Tx1 113014 113397 98 + . . scaffold1892 TRF Tandem_Repeat 113421 114121 1077 + . . scaffold1892 TRF Tandem_Repeat 114319 114352 59 + . . scaffold1892 WUBlastX LINE_L1-Tx1 114460 114870 47 + . . scaffold1892 TRF Tandem_Repeat 114883 114911 58 + . . scaffold1892 TRF Tandem_Repeat 123067 123120 108 + . . scaffold1892 GLEAN mRNA 127495 129172 1 - . ID=CGI_10011312; scaffold1892 GLEAN promoter 129173 130172 1 - . ID=CGI_10011312; scaffold1892 GLEAN mRNA 129813 130180 0.999986 - . ID=CGI_10011313; scaffold1892 GLEAN promoter 130181 131180 0.999986 - . ID=CGI_10011313; scaffold1892 GLEAN mRNA 130400 134377 0.99506 - . ID=CGI_10011314; scaffold1892 WUBlastX DNA_hAT-hAT5 131498 132310 104 - . . scaffold1892 GLEAN promoter 134378 135377 0.99506 - . ID=CGI_10011314; scaffold1892 TRF Tandem_Repeat 139687 139742 112 + . . scaffold1892 TRF Tandem_Repeat 164486 164646 157 + . . scaffold1892 GLEAN promoter 167835 168834 0.986228 + . ID=CGI_10011315; scaffold1892 GLEAN mRNA 168835 178050 0.986228 + . ID=CGI_10011315; scaffold1892 GLEAN mRNA 180754 183036 0.761207 - . ID=CGI_10011316; scaffold1892 GLEAN promoter 183037 184036 0.761207 - . ID=CGI_10011316; scaffold1892 WUBlastX LINE_Penelope 183913 184338 26 - . . scaffold1892 GLEAN mRNA 188957 190945 0.593391 - . ID=CGI_10011317; scaffold1892 GLEAN promoter 190068 191067 0.699062 + . ID=CGI_10011318; scaffold1892 GLEAN promoter 190946 191945 0.593391 - . ID=CGI_10011317; scaffold1892 GLEAN mRNA 191068 209583 0.699062 + . ID=CGI_10011318; scaffold1892 TRF Tandem_Repeat 191193 191416 203 + . . scaffold1892 GLEAN mRNA 191626 209378 0.92045 - . ID=CGI_10011319; scaffold1892 TRF Tandem_Repeat 193820 193852 57 + . . scaffold1892 GLEAN promoter 209379 210378 0.92045 - . ID=CGI_10011319; scaffold1892 TRF Tandem_Repeat 209819 209867 98 + . . scaffold1892 TRF Tandem_Repeat 209920 209954 70 + . . scaffold1892 GLEAN mRNA 210714 211409 0.920936 - . ID=CGI_10011320; scaffold1892 GLEAN promoter 211410 212409 0.920936 - . ID=CGI_10011320; scaffold1892 GLEAN mRNA 215307 285710 0.920896 - . ID=CGI_10011321; scaffold1892 TRF Tandem_Repeat 229882 229999 202 + . . scaffold1892 TRF Tandem_Repeat 232739 232837 83 + . . scaffold1892 TRF Tandem_Repeat 233223 233844 844 + . . scaffold1892 TRF Tandem_Repeat 237786 237994 238 + . . scaffold1892 TRF Tandem_Repeat 242208 242247 80 + . . scaffold1892 TRF Tandem_Repeat 248199 248979 595 + . . scaffold1892 TRF Tandem_Repeat 248199 248950 695 + . . scaffold1892 TRF Tandem_Repeat 248199 248950 336 + . . scaffold1892 TRF Tandem_Repeat 248200 248979 500 + . . scaffold1892 TRF Tandem_Repeat 255274 255304 62 + . . scaffold1892 TRF Tandem_Repeat 264031 264650 896 + . . scaffold1892 TRF Tandem_Repeat 264031 264650 900 + . . scaffold1892 TRF Tandem_Repeat 269995 271078 1338 + . . scaffold1892 TRF Tandem_Repeat 272842 272903 72 + . . scaffold1892 TRF Tandem_Repeat 272845 272902 64 + . . scaffold1892 TRF Tandem_Repeat 272853 272903 86 + . . scaffold1892 TRF Tandem_Repeat 274951 275210 238 + . . scaffold1892 TRF Tandem_Repeat 275008 275210 181 + . . scaffold1892 TRF Tandem_Repeat 276727 276906 198 + . . scaffold1892 GLEAN promoter 285711 286710 0.920896 - . ID=CGI_10011321; scaffold1892 WUBlastX LINE_L2 286423 287139 102 + . . scaffold1892 WUBlastX LINE_L2 286582 287169 174 + . . scaffold1892 WUBlastX LINE_L1-Tx1 287577 287915 217 + . . scaffold1893 GLEAN mRNA 6069 18509 0.990926 - . ID=CGI_10008844; scaffold1893 GLEAN promoter 6931 7930 1 + . ID=CGI_10008845; scaffold1893 GLEAN mRNA 7931 11382 1 + . ID=CGI_10008845; scaffold1893 GLEAN promoter 18510 19509 0.990926 - . ID=CGI_10008844; scaffold1893 GLEAN promoter 28977 29976 0.999979 + . ID=CGI_10008846; scaffold1893 GLEAN mRNA 29977 30201 0.999979 + . ID=CGI_10008846; scaffold1893 GLEAN mRNA 31102 37985 0.593391 - . ID=CGI_10008847; scaffold1893 GLEAN promoter 37986 38985 0.593391 - . ID=CGI_10008847; scaffold1893 GLEAN mRNA 39042 45376 1 - . ID=CGI_10008848; scaffold1893 GLEAN promoter 45377 46376 1 - . ID=CGI_10008848; scaffold1893 GLEAN mRNA 50688 56646 1 - . ID=CGI_10008849; scaffold1893 TRF Tandem_Repeat 55613 56495 1294 + . . scaffold1893 GLEAN promoter 56647 57646 1 - . ID=CGI_10008849; scaffold1893 TRF Tandem_Repeat 61798 61824 54 + . . scaffold1893 GLEAN mRNA 67043 74488 0.999675 - . ID=CGI_10008850; scaffold1893 TRF Tandem_Repeat 73605 73632 56 + . . scaffold1893 GLEAN promoter 74489 75488 0.999675 - . ID=CGI_10008850; scaffold1893 GLEAN mRNA 75752 78148 0.733296 - . ID=CGI_10008851; scaffold1893 GLEAN promoter 77654 78653 1 + . ID=CGI_10008852; scaffold1893 GLEAN promoter 78149 79148 0.733296 - . ID=CGI_10008851; scaffold1893 GLEAN mRNA 78654 82853 1 + . ID=CGI_10008852; scaffold1893 GLEAN mRNA 83972 91071 1 - . ID=CGI_10008853; scaffold1893 GLEAN promoter 90270 91269 0.999676 + . ID=CGI_10008854; scaffold1893 GLEAN promoter 91072 92071 1 - . ID=CGI_10008853; scaffold1893 GLEAN mRNA 91270 96311 0.999676 + . ID=CGI_10008854; scaffold1893 TRF Tandem_Repeat 94061 94232 103 + . . scaffold1893 TRF Tandem_Repeat 94109 94333 282 + . . scaffold1893 GLEAN mRNA 98127 101625 0.451888 - . ID=CGI_10008855; scaffold1893 GLEAN promoter 101626 102625 0.451888 - . ID=CGI_10008855; scaffold1893 TRF Tandem_Repeat 104230 104272 86 + . . scaffold1893 GLEAN mRNA 107632 119731 0.918146 - . ID=CGI_10008856; scaffold1893 TRF Tandem_Repeat 110324 111276 1347 + . . scaffold1893 TRF Tandem_Repeat 111422 112439 1525 + . . scaffold1893 TRF Tandem_Repeat 117163 117276 212 + . . scaffold1893 GLEAN promoter 119732 120731 0.918146 - . ID=CGI_10008856; scaffold1893 TRF Tandem_Repeat 120061 120122 124 + . . scaffold1893 GLEAN mRNA 130534 133803 1 - . ID=CGI_10008857; scaffold1893 TRF Tandem_Repeat 130745 130820 134 + . . scaffold1893 TRF Tandem_Repeat 132211 132238 56 + . . scaffold1893 GLEAN promoter 133804 134803 1 - . ID=CGI_10008857; scaffold1893 TRF Tandem_Repeat 150455 150713 289 + . . scaffold1893 TRF Tandem_Repeat 150469 150714 289 + . . scaffold1893 GLEAN promoter 151252 152251 0.461031 + . ID=CGI_10008858; scaffold1893 GLEAN mRNA 152252 154530 0.461031 + . ID=CGI_10008858; scaffold1893 TRF Tandem_Repeat 154038 154359 301 + . . scaffold1893 WUBlastX LTR_DIRS? 162167 162409 132 - . . scaffold1893 TRF Tandem_Repeat 164650 164696 94 + . . scaffold1893 TRF Tandem_Repeat 165973 166043 133 + . . scaffold1893 TRF Tandem_Repeat 168287 168388 134 + . . scaffold1893 WUBlastX LTR_Gypsy 184340 185524 625 + . . scaffold1893 WUBlastX LTR_Gypsy-Cigr 184340 185788 360 + . . scaffold1893 GLEAN promoter 187705 188704 0.999571 + . ID=CGI_10008860; scaffold1893 GLEAN mRNA 188705 198014 0.999571 + . ID=CGI_10008860; scaffold1893 TRF Tandem_Repeat 188878 188976 153 + . . scaffold1893 TRF Tandem_Repeat 191808 191851 72 + . . scaffold1893 TRF Tandem_Repeat 193697 193830 74 + . . scaffold1893 TRF Tandem_Repeat 193706 193746 50 + . . scaffold1893 GLEAN promoter 198713 199712 0.999824 + . ID=CGI_10008861; scaffold1893 GLEAN mRNA 199713 203993 0.999824 + . ID=CGI_10008861; scaffold1893 WUBlastX DNA_IS4EU 200591 201550 483 + . . scaffold1893 WUBlastX DNA_Kolobok-IS4 202361 203050 205 - . . scaffold1893 WUBlastX DNA_Kolobok-IS4 203068 203232 36 - . . scaffold1893 WUBlastX DNA_IS4EU 203398 203583 37 - . . scaffold1893 WUBlastX DNA_IS4EU 204180 204719 50 - . . scaffold1893 TRF Tandem_Repeat 209921 209976 112 + . . scaffold1893 GLEAN promoter 215976 216975 0.999661 + . ID=CGI_10008862; scaffold1893 GLEAN mRNA 216976 218793 0.999661 + . ID=CGI_10008862; scaffold1894 GLEAN promoter 1 330 0.999826 + . ID=CGI_10013333; scaffold1894 GLEAN mRNA 331 3305 0.999826 + . ID=CGI_10013333; scaffold1894 GLEAN mRNA 18177 67015 0.499328 - . ID=CGI_10013334; scaffold1894 TRF Tandem_Repeat 22034 22076 86 + . . scaffold1894 TRF Tandem_Repeat 23765 23810 74 + . . scaffold1894 TRF Tandem_Repeat 25759 25794 54 + . . scaffold1894 TRF Tandem_Repeat 28230 28264 56 + . . scaffold1894 TRF Tandem_Repeat 40585 40625 82 + . . scaffold1894 WUBlastX LINE_L1-Tx1 40775 41068 47 - . . scaffold1894 WUBlastX LINE_L1-Tx1 40778 40993 54 - . . scaffold1894 WUBlastX LINE_L1 40865 41185 44 - . . scaffold1894 WUBlastX LINE_L1 41620 41796 45 - . . scaffold1894 WUBlastX LINE_L1-Tx1 41668 41901 44 - . . scaffold1894 WUBlastX LINE_L1-Tx1 41994 42530 51 - . . scaffold1894 WUBlastX LINE_L1-Tx1 42057 42506 124 - . . scaffold1894 TRF Tandem_Repeat 48646 48685 80 + . . scaffold1894 GLEAN promoter 67016 68015 0.499328 - . ID=CGI_10013334; scaffold1894 WUBlastX LINE_L2 73848 74555 263 - . . scaffold1894 WUBlastX LINE_L2 73998 74549 419 - . . scaffold1894 WUBlastX LINE_L2 74572 76059 479 - . . scaffold1894 WUBlastX LINE_CR1-L2 76863 77039 106 - . . scaffold1894 WUBlastX LINE_L2 76866 77123 58 - . . scaffold1894 WUBlastX LINE_L2 77083 77580 86 - . . scaffold1894 WUBlastX LINE_CR1-L2 77086 77505 154 - . . scaffold1894 GLEAN promoter 87465 88464 1 + . ID=CGI_10013335; scaffold1894 GLEAN mRNA 88465 89170 1 + . ID=CGI_10013335; scaffold1894 WUBlastX DNA_hAT-Tip100 98335 99234 142 - . . scaffold1894 WUBlastX DNA_hAT-Tip100 99350 99388 22 - . . scaffold1894 WUBlastX DNA_hAT-Tip100 99350 99412 21 - . . scaffold1894 WUBlastX DNA_Sola 100202 100378 22 + . . scaffold1894 WUBlastX DNA_Sola 100274 100378 37 + . . scaffold1894 WUBlastX DNA_Sola 100295 100360 44 + . . scaffold1894 WUBlastX DNA_Sola 100931 102421 115 + . . scaffold1894 WUBlastX DNA_Sola 101008 101508 185 + . . scaffold1894 WUBlastX DNA_Sola 101507 101863 207 + . . scaffold1894 GLEAN promoter 107261 108260 0.842452 + . ID=CGI_10013336; scaffold1894 GLEAN mRNA 108261 129547 0.842452 + . ID=CGI_10013336; scaffold1894 TRF Tandem_Repeat 108586 108626 82 + . . scaffold1894 TRF Tandem_Repeat 121240 121280 82 + . . scaffold1894 TRF Tandem_Repeat 147967 148033 89 + . . scaffold1894 TRF Tandem_Repeat 148644 148674 62 + . . scaffold1894 TRF Tandem_Repeat 148865 148906 84 + . . scaffold1894 TRF Tandem_Repeat 151295 151354 75 + . . scaffold1894 TRF Tandem_Repeat 169345 169389 90 + . . scaffold1894 GLEAN promoter 188205 189204 1 + . ID=CGI_10013338; scaffold1894 GLEAN mRNA 189205 190365 1 + . ID=CGI_10013338; scaffold1894 TRF Tandem_Repeat 191141 191193 106 + . . scaffold1894 WUBlastX LTR_Gypsy 198160 198327 68 + . . scaffold1894 WUBlastX LTR_Gypsy 198232 198333 83 + . . scaffold1894 WUBlastX LTR_Gypsy 198330 198458 75 + . . scaffold1894 WUBlastX LTR_Gypsy 198554 198961 130 + . . scaffold1894 WUBlastX LTR_Gypsy 198623 199129 166 + . . scaffold1894 WUBlastX LTR_Gypsy 198647 199069 303 + . . scaffold1894 WUBlastX LTR_Gypsy 199288 199350 21 + . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 205983 206138 58 + . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 206131 206499 75 + . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 206227 206697 59 + . . scaffold1894 WUBlastX LTR_Gypsy 206763 207197 48 + . . scaffold1894 WUBlastX LTR_Gypsy 206805 207059 77 + . . scaffold1894 WUBlastX LTR_Gypsy 206913 207248 30 + . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 207338 208366 658 + . . scaffold1894 TRF Tandem_Repeat 208429 209219 1076 + . . scaffold1894 WUBlastX LTR_Gypsy 209250 209426 82 + . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 209277 210422 324 + . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 209277 209981 526 + . . scaffold1894 WUBlastX LTR_Gypsy 209277 210119 391 + . . scaffold1894 WUBlastX LTR_Gypsy 210342 210437 43 + . . scaffold1894 WUBlastX LTR_Gypsy-Cigr 210440 211309 540 + . . scaffold1894 TRF Tandem_Repeat 211362 212494 1381 + . . scaffold1894 GLEAN promoter 212925 213924 0.999528 + . ID=CGI_10013339; scaffold1894 TRF Tandem_Repeat 213616 213663 60 + . . scaffold1894 GLEAN mRNA 213925 214479 0.999528 + . ID=CGI_10013339; scaffold1894 GLEAN promoter 214043 215042 0.725039 + . ID=CGI_10013340; scaffold1894 GLEAN mRNA 215043 252780 0.725039 + . ID=CGI_10013340; scaffold1894 TRF Tandem_Repeat 240254 240288 70 + . . scaffold1894 TRF Tandem_Repeat 252228 252394 141 + . . scaffold1894 TRF Tandem_Repeat 252429 252565 152 + . . scaffold1894 WUBlastX LINE_L1-Tx1 255432 255644 72 - . . scaffold1894 WUBlastX LINE_L1-Tx1 255474 255662 83 - . . scaffold1894 WUBlastX LINE_L1-Tx1 255483 255881 22 - . . scaffold1894 GLEAN promoter 273736 274735 0.527849 + . ID=CGI_10013341; scaffold1894 GLEAN mRNA 274736 295035 0.527849 + . ID=CGI_10013341; scaffold1894 GLEAN promoter 302181 303180 0.788071 + . ID=CGI_10013342; scaffold1894 GLEAN mRNA 303181 340585 0.788071 + . ID=CGI_10013342; scaffold1894 TRF Tandem_Repeat 313904 313937 68 + . . scaffold1894 TRF Tandem_Repeat 314559 314609 102 + . . scaffold1894 WUBlastX LINE_L1-Tx1 318567 318827 25 - . . scaffold1894 WUBlastX LINE_L1-Tx1 318833 319354 128 - . . scaffold1894 WUBlastX LINE_L1-Tx1 318836 319531 37 - . . scaffold1894 GLEAN mRNA 335287 335994 0.899279 - . ID=CGI_10013343; scaffold1894 TRF Tandem_Repeat 335437 335514 84 + . . scaffold1894 GLEAN promoter 335995 336994 0.899279 - . ID=CGI_10013343; scaffold1894 GLEAN mRNA 337182 343733 0.899228 - . ID=CGI_10013344; scaffold1894 GLEAN promoter 343734 344733 0.899228 - . ID=CGI_10013344; scaffold1894 TRF Tandem_Repeat 352530 352713 224 + . . scaffold1895 GLEAN promoter 1398 2397 0.997651 + . ID=CGI_10010968; scaffold1895 GLEAN mRNA 2398 9793 0.997651 + . ID=CGI_10010968; scaffold1895 TRF Tandem_Repeat 6161 6203 86 + . . scaffold1895 GLEAN mRNA 10144 35398 0.383689 - . ID=CGI_10010969; scaffold1895 TRF Tandem_Repeat 14560 15588 1263 + . . scaffold1895 WUBlastX LINE_L1-Tx1 22871 23146 64 + . . scaffold1895 WUBlastX LINE_L1-Tx1 22871 23002 68 + . . scaffold1895 TRF Tandem_Repeat 32325 32386 72 + . . scaffold1895 WUBlastX DNA_PiggyBac 34430 34687 37 - . . scaffold1895 GLEAN promoter 35399 36398 0.383689 - . ID=CGI_10010969; scaffold1895 GLEAN mRNA 36288 37974 0.976644 - . ID=CGI_10010970; scaffold1895 GLEAN promoter 37975 38974 0.976644 - . ID=CGI_10010970; scaffold1895 GLEAN mRNA 38398 38595 0.77621 - . ID=CGI_10010971; scaffold1895 GLEAN promoter 38596 39595 0.77621 - . ID=CGI_10010971; scaffold1895 GLEAN mRNA 43133 43456 1 - . ID=CGI_10010972; scaffold1895 GLEAN promoter 43457 44456 1 - . ID=CGI_10010972; scaffold1895 GLEAN mRNA 43650 56910 0.456402 - . ID=CGI_10010973; scaffold1895 TRF Tandem_Repeat 55713 55829 82 + . . scaffold1895 GLEAN promoter 56911 57910 0.456402 - . ID=CGI_10010973; scaffold1895 TRF Tandem_Repeat 61354 61396 50 + . . scaffold1895 GLEAN mRNA 63276 64283 1 - . ID=CGI_10010974; scaffold1895 GLEAN promoter 63803 64802 0.999675 + . ID=CGI_10010975; scaffold1895 GLEAN promoter 64284 65283 1 - . ID=CGI_10010974; scaffold1895 GLEAN mRNA 64803 72569 0.999675 + . ID=CGI_10010975; scaffold1895 GLEAN promoter 78641 79640 0.999999 + . ID=CGI_10010976; scaffold1895 TRF Tandem_Repeat 78949 79038 58 + . . scaffold1895 GLEAN mRNA 79641 83117 0.999999 + . ID=CGI_10010976; scaffold1895 GLEAN mRNA 89013 121406 0.999916 - . ID=CGI_10010977; scaffold1895 TRF Tandem_Repeat 90128 90261 236 + . . scaffold1895 TRF Tandem_Repeat 105166 105558 209 + . . scaffold1895 TRF Tandem_Repeat 105166 105558 265 + . . scaffold1895 GLEAN promoter 106564 107563 0.999999 + . ID=CGI_10010978; scaffold1895 GLEAN mRNA 107564 108940 0.999999 + . ID=CGI_10010978; scaffold1895 TRF Tandem_Repeat 113067 113290 362 + . . scaffold1895 GLEAN promoter 121407 122406 0.999916 - . ID=CGI_10010977; scaffold1895 GLEAN mRNA 126234 162235 0.811929 - . ID=CGI_10010979; scaffold1895 TRF Tandem_Repeat 133039 135228 3066 + . . scaffold1895 TRF Tandem_Repeat 133233 135093 2872 + . . scaffold1895 TRF Tandem_Repeat 142427 142526 91 + . . scaffold1895 TRF Tandem_Repeat 142427 142529 59 + . . scaffold1895 TRF Tandem_Repeat 142454 142526 73 + . . scaffold1895 TRF Tandem_Repeat 142454 142514 72 + . . scaffold1895 TRF Tandem_Repeat 142454 142527 70 + . . scaffold1895 GLEAN promoter 143714 144713 0.999965 + . ID=CGI_10010980; scaffold1895 GLEAN mRNA 144714 147456 0.999965 + . ID=CGI_10010980; scaffold1895 TRF Tandem_Repeat 152073 152290 337 + . . scaffold1895 GLEAN promoter 162124 163123 0.811898 + . ID=CGI_10010981; scaffold1895 GLEAN promoter 162236 163235 0.811929 - . ID=CGI_10010979; scaffold1895 GLEAN mRNA 163124 172032 0.811898 + . ID=CGI_10010981; scaffold1895 TRF Tandem_Repeat 167210 167769 714 + . . scaffold1895 TRF Tandem_Repeat 170303 170363 104 + . . scaffold1895 GLEAN promoter 172834 173833 1 + . ID=CGI_10010982; scaffold1895 GLEAN mRNA 173834 177956 1 + . ID=CGI_10010982; scaffold1895 GLEAN mRNA 178359 185653 0.585901 - . ID=CGI_10010983; scaffold1895 GLEAN promoter 185654 186653 0.585901 - . ID=CGI_10010983; scaffold1895 GLEAN promoter 186950 187949 1 + . ID=CGI_10010985; scaffold1895 GLEAN mRNA 187702 201524 0.585578 - . ID=CGI_10010984; scaffold1895 GLEAN mRNA 187950 192915 1 + . ID=CGI_10010985; scaffold1895 WUBlastX LINE_RTE-X 188909 189037 73 + . . scaffold1895 WUBlastX LINE_RTE-X 188909 189064 47 + . . scaffold1895 TRF Tandem_Repeat 195855 196028 321 + . . scaffold1895 TRF Tandem_Repeat 199303 199362 113 + . . scaffold1895 GLEAN promoter 199979 200978 0.703774 + . ID=CGI_10010986; scaffold1895 TRF Tandem_Repeat 200185 200214 51 + . . scaffold1895 GLEAN mRNA 200979 219103 0.703774 + . ID=CGI_10010986; scaffold1895 GLEAN promoter 201525 202524 0.585578 - . ID=CGI_10010984; scaffold1895 TRF Tandem_Repeat 206438 206537 94 + . . scaffold1895 TRF Tandem_Repeat 212107 212139 66 + . . scaffold1895 TRF Tandem_Repeat 214363 214854 314 + . . scaffold1895 TRF Tandem_Repeat 214658 214912 456 + . . scaffold1895 TRF Tandem_Repeat 217269 217407 224 + . . scaffold1895 TRF Tandem_Repeat 218175 218226 104 + . . scaffold1895 TRF Tandem_Repeat 218606 218647 84 + . . scaffold1895 TRF Tandem_Repeat 235498 235567 140 + . . scaffold1895 TRF Tandem_Repeat 236034 236063 60 + . . scaffold1895 GLEAN promoter 239214 240213 0.996763 + . ID=CGI_10010987; scaffold1895 GLEAN mRNA 240214 243414 0.996763 + . ID=CGI_10010987; scaffold1895 GLEAN mRNA 250839 253810 1 - . ID=CGI_10010988; scaffold1895 GLEAN promoter 253811 254810 1 - . ID=CGI_10010988; scaffold1895 TRF Tandem_Repeat 264046 264106 122 + . . scaffold1895 GLEAN mRNA 270689 272327 1 - . ID=CGI_10010989; scaffold1895 GLEAN promoter 272328 273327 1 - . ID=CGI_10010989; scaffold1895 TRF Tandem_Repeat 275071 275114 88 + . . scaffold1896 TRF Tandem_Repeat 179 205 54 + . . scaffold1896 GLEAN mRNA 404 8988 1 - . ID=CGI_10019630; scaffold1896 GLEAN promoter 8989 9988 1 - . ID=CGI_10019630; scaffold1896 TRF Tandem_Repeat 11412 11472 106 + . . scaffold1896 TRF Tandem_Repeat 11558 11609 95 + . . scaffold1896 GLEAN promoter 16840 17839 0.843514 + . ID=CGI_10019631; scaffold1896 GLEAN mRNA 17840 32148 0.843514 + . ID=CGI_10019631; scaffold1896 GLEAN mRNA 34420 38073 0.996199 - . ID=CGI_10019632; scaffold1896 GLEAN promoter 38074 39073 0.996199 - . ID=CGI_10019632; scaffold1896 GLEAN promoter 41228 42227 0.999999 + . ID=CGI_10019633; scaffold1896 GLEAN mRNA 42228 45997 0.999999 + . ID=CGI_10019633; scaffold1896 TRF Tandem_Repeat 44498 44549 95 + . . scaffold1896 GLEAN promoter 46123 47122 0.989491 + . ID=CGI_10019634; scaffold1896 GLEAN mRNA 47123 84507 0.989491 + . ID=CGI_10019634; scaffold1896 WUBlastX LINE_I 66811 66951 56 + . . scaffold1896 TRF Tandem_Repeat 69252 69687 598 + . . scaffold1896 TRF Tandem_Repeat 75826 75957 201 + . . scaffold1896 TRF Tandem_Repeat 77999 78056 71 + . . scaffold1896 TRF Tandem_Repeat 78008 78052 90 + . . scaffold1896 TRF Tandem_Repeat 90055 90112 62 + . . scaffold1896 TRF Tandem_Repeat 90056 90115 59 + . . scaffold1896 TRF Tandem_Repeat 90065 90115 58 + . . scaffold1896 TRF Tandem_Repeat 94752 95476 657 + . . scaffold1896 WUBlastX LTR_Gypsy 104004 104276 43 + . . scaffold1896 WUBlastX LTR_Gypsy 104293 104652 33 + . . scaffold1896 WUBlastX LTR_Gypsy 104518 104685 32 + . . scaffold1896 WUBlastX LTR_Gypsy 104733 105176 23 + . . scaffold1896 WUBlastX LTR_Gypsy 104847 105464 104 + . . scaffold1896 WUBlastX LTR_Gypsy 104856 105716 79 + . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 105610 107025 772 + . . scaffold1896 WUBlastX LTR_Gypsy 107157 107579 167 + . . scaffold1896 WUBlastX LTR_Gypsy 107241 107579 186 + . . scaffold1896 WUBlastX LTR_Gypsy 107247 107639 124 + . . scaffold1896 WUBlastX LTR_Gypsy 107271 107750 60 + . . scaffold1896 WUBlastX LTR_ERVL 108064 108387 37 + . . scaffold1896 WUBlastX LTR_Gypsy 108127 108387 146 + . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 108196 108789 172 + . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 108788 108883 25 + . . scaffold1896 WUBlastX LTR_Gypsy 108824 108919 21 + . . scaffold1896 TRF Tandem_Repeat 110062 110869 989 + . . scaffold1896 WUBlastX LINE_L1-Tx1 111097 111483 33 + . . scaffold1896 WUBlastX LINE_L1 111676 111837 21 + . . scaffold1896 WUBlastX LINE_L1 112136 112285 29 + . . scaffold1896 TRF Tandem_Repeat 112731 112758 56 + . . scaffold1896 TRF Tandem_Repeat 113243 113278 72 + . . scaffold1896 TRF Tandem_Repeat 113276 113348 137 + . . scaffold1896 TRF Tandem_Repeat 114844 115672 824 + . . scaffold1896 WUBlastX LINE_RTE-X 116671 117369 261 + . . scaffold1896 GLEAN mRNA 122415 155765 0.274309 - . ID=CGI_10019635; scaffold1896 TRF Tandem_Repeat 131944 131993 100 + . . scaffold1896 TRF Tandem_Repeat 137150 137885 1040 + . . scaffold1896 TRF Tandem_Repeat 148163 148192 51 + . . scaffold1896 TRF Tandem_Repeat 148270 148299 51 + . . scaffold1896 WUBlastX LINE_L2 150167 150664 128 - . . scaffold1896 GLEAN promoter 155766 156765 0.274309 - . ID=CGI_10019635; scaffold1896 WUBlastX LINE_RTE-BovB 157713 158126 122 - . . scaffold1896 WUBlastX LINE_RTE-BovB 157743 158093 181 - . . scaffold1896 WUBlastX LINE_RTE-BovB 158089 158241 46 - . . scaffold1896 TRF Tandem_Repeat 158363 158428 123 + . . scaffold1896 WUBlastX LINE_RTE-BovB 158435 159184 47 - . . scaffold1896 WUBlastX LINE_RTE-BovB 158435 158797 91 - . . scaffold1896 WUBlastX LINE_L1 161372 161494 25 - . . scaffold1896 WUBlastX LINE_L1 161408 161488 34 - . . scaffold1896 WUBlastX LINE_L1-Tx1 161408 161584 24 - . . scaffold1896 WUBlastX LINE_L1 161417 161629 24 - . . scaffold1896 WUBlastX LINE_L1-Tx1 161750 161935 28 - . . scaffold1896 WUBlastX LINE_L1-Tx1 161822 161956 23 - . . scaffold1896 WUBlastX LINE_L1 161822 161929 40 - . . scaffold1896 WUBlastX LINE_L1-Tx1 161840 161983 21 - . . scaffold1896 WUBlastX LINE_L1-Tx1 162102 162326 24 - . . scaffold1896 WUBlastX LINE_L1-Tx1 162144 162293 33 - . . scaffold1896 WUBlastX LINE_L1-Tx1 162296 162703 43 - . . scaffold1896 WUBlastX LINE_L1 162371 162694 112 - . . scaffold1896 WUBlastX LINE_L1-Tx1 162712 163428 408 - . . scaffold1896 WUBlastX LINE_L1 163493 163690 36 - . . scaffold1896 WUBlastX LINE_L1 163604 163735 24 - . . scaffold1896 GLEAN mRNA 165695 209448 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 170118 170149 64 + . . scaffold1896 TRF Tandem_Repeat 176115 176164 75 + . . scaffold1896 TRF Tandem_Repeat 176551 176594 88 + . . scaffold1896 TRF Tandem_Repeat 178051 178104 99 + . . scaffold1896 TRF Tandem_Repeat 186277 186320 88 + . . scaffold1896 TRF Tandem_Repeat 187016 187417 517 + . . scaffold1896 TRF Tandem_Repeat 198967 199016 82 + . . scaffold1896 TRF Tandem_Repeat 204905 205110 198 + . . scaffold1896 GLEAN promoter 209449 210448 0.936295 - . ID=CGI_10019636; scaffold1896 TRF Tandem_Repeat 218356 218390 61 + . . scaffold1896 TRF Tandem_Repeat 223119 223243 137 + . . scaffold1896 TRF Tandem_Repeat 224558 225812 1707 + . . scaffold1896 TRF Tandem_Repeat 227033 227078 57 + . . scaffold1896 TRF Tandem_Repeat 227036 227077 50 + . . scaffold1896 TRF Tandem_Repeat 228618 228664 94 + . . scaffold1896 TRF Tandem_Repeat 229757 229784 56 + . . scaffold1896 TRF Tandem_Repeat 230210 230261 104 + . . scaffold1896 GLEAN mRNA 231584 231895 0.999369 - . ID=CGI_10019637; scaffold1896 GLEAN promoter 231896 232895 0.999369 - . ID=CGI_10019637; scaffold1896 TRF Tandem_Repeat 232487 232534 96 + . . scaffold1896 TRF Tandem_Repeat 235523 235565 86 + . . scaffold1896 TRF Tandem_Repeat 240772 240847 152 + . . scaffold1896 TRF Tandem_Repeat 256778 256815 76 + . . scaffold1896 TRF Tandem_Repeat 267533 268160 706 + . . scaffold1896 TRF Tandem_Repeat 268716 268744 58 + . . scaffold1896 TRF Tandem_Repeat 269227 269862 707 + . . scaffold1896 TRF Tandem_Repeat 274134 275171 1740 + . . scaffold1896 TRF Tandem_Repeat 274134 275171 1722 + . . scaffold1896 GLEAN promoter 274503 275502 0.665839 + . ID=CGI_10019638; scaffold1896 GLEAN mRNA 275503 285211 0.665839 + . ID=CGI_10019638; scaffold1896 GLEAN mRNA 279180 307075 0.475607 - . ID=CGI_10019639; scaffold1896 TRF Tandem_Repeat 279832 280198 430 + . . scaffold1896 TRF Tandem_Repeat 279902 279971 95 + . . scaffold1896 GLEAN promoter 293553 294552 0.998095 + . ID=CGI_10019640; scaffold1896 GLEAN mRNA 294553 308862 0.998095 + . ID=CGI_10019640; scaffold1896 GLEAN promoter 307076 308075 0.475607 - . ID=CGI_10019639; scaffold1896 GLEAN mRNA 312637 317993 0.621901 - . ID=CGI_10019641; scaffold1896 GLEAN promoter 317994 318993 0.621901 - . ID=CGI_10019641; scaffold1896 GLEAN mRNA 318066 331623 0.99887 - . ID=CGI_10019642; scaffold1896 TRF Tandem_Repeat 323422 323471 100 + . . scaffold1896 GLEAN promoter 331624 332623 0.99887 - . ID=CGI_10019642; scaffold1896 GLEAN promoter 333424 334423 0.894544 + . ID=CGI_10019643; scaffold1896 GLEAN mRNA 334424 340771 0.894544 + . ID=CGI_10019643; scaffold1896 TRF Tandem_Repeat 340202 340238 74 + . . scaffold1896 TRF Tandem_Repeat 342511 342555 90 + . . scaffold1896 GLEAN mRNA 348807 358317 0.999949 - . ID=CGI_10019644; scaffold1896 TRF Tandem_Repeat 357515 357564 100 + . . scaffold1896 GLEAN promoter 358318 359317 0.999949 - . ID=CGI_10019644; scaffold1896 TRF Tandem_Repeat 360133 360202 140 + . . scaffold1896 GLEAN mRNA 361572 367999 0.999624 - . ID=CGI_10019645; scaffold1896 GLEAN promoter 362286 363285 0.893639 + . ID=CGI_10019646; scaffold1896 GLEAN mRNA 363286 372908 0.893639 + . ID=CGI_10019646; scaffold1896 TRF Tandem_Repeat 364842 364967 143 + . . scaffold1896 TRF Tandem_Repeat 365215 365261 94 + . . scaffold1896 GLEAN promoter 368000 368999 0.999624 - . ID=CGI_10019645; scaffold1896 GLEAN promoter 374383 375382 0.998417 + . ID=CGI_10019647; scaffold1896 GLEAN mRNA 375383 377275 0.998417 + . ID=CGI_10019647; scaffold1896 GLEAN mRNA 382396 395686 0.990814 - . ID=CGI_10019649; scaffold1896 WUBlastX DNA_Crypton 386345 386719 59 - . . scaffold1896 TRF Tandem_Repeat 391798 392179 535 + . . scaffold1896 TRF Tandem_Repeat 391798 392179 535 + . . scaffold1896 GLEAN promoter 395687 396686 0.990814 - . ID=CGI_10019649; scaffold1896 GLEAN mRNA 414676 415263 0.996819 - . ID=CGI_10019650; scaffold1896 GLEAN promoter 415264 416263 0.996819 - . ID=CGI_10019650; scaffold1896 WUBlastX LTR_Gypsy 415327 416907 479 - . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 415579 418395 1948 - . . scaffold1896 WUBlastX LTR_Gypsy 415621 418941 1762 - . . scaffold1896 WUBlastX LTR_Gypsy 416968 419316 697 - . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 419290 419994 196 - . . scaffold1896 WUBlastX LTR_Gypsy-Cigr 419515 420090 160 - . . scaffold1896 TRF Tandem_Repeat 427323 427662 422 + . . scaffold1896 TRF Tandem_Repeat 427334 427517 179 + . . scaffold1896 TRF Tandem_Repeat 427334 427653 242 + . . scaffold1896 WUBlastX LINE_L1-Tx1 433116 433460 89 + . . scaffold1896 WUBlastX LINE_L1 433197 433727 72 + . . scaffold1896 WUBlastX DNA_TcMar-Tc1 436175 436621 165 + . . scaffold1896 WUBlastX DNA_TcMar-Tc1 436626 436808 65 + . . scaffold1896 TRF Tandem_Repeat 443748 444063 327 + . . scaffold1896 TRF Tandem_Repeat 443748 444063 363 + . . scaffold1896 TRF Tandem_Repeat 444477 444750 333 + . . scaffold1896 TRF Tandem_Repeat 444477 444750 370 + . . scaffold1896 TRF Tandem_Repeat 444595 444653 50 + . . scaffold1896 TRF Tandem_Repeat 447656 447683 56 + . . scaffold1896 GLEAN mRNA 449372 460411 0.989805 - . ID=CGI_10019651; scaffold1896 WUBlastX LTR_Gypsy 453614 453685 30 - . . scaffold1896 TRF Tandem_Repeat 458039 458067 58 + . . scaffold1896 GLEAN promoter 460412 461411 0.989805 - . ID=CGI_10019651; scaffold1896 TRF Tandem_Repeat 465724 465763 80 + . . scaffold1896 WUBlastX LINE_L2 481418 482242 68 + . . scaffold1896 WUBlastX LINE_RTE-BovB 481568 482626 824 + . . scaffold1896 GLEAN promoter 481993 482992 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LINE_RTE-BovB 482024 482734 277 + . . scaffold1896 WUBlastX LINE_RTE-BovB 482614 482775 97 + . . scaffold1896 WUBlastX LINE_RTE-BovB 482653 482832 25 + . . scaffold1896 WUBlastX LINE_L1 482767 482898 24 + . . scaffold1896 GLEAN mRNA 482993 491454 0.999947 + . ID=CGI_10019652; scaffold1896 WUBlastX LTR_Ngaro 483439 483903 68 + . . scaffold1896 WUBlastX LTR_Ngaro 483439 483717 111 + . . scaffold1896 WUBlastX LTR_Ngaro 484068 485528 762 + . . scaffold1896 WUBlastX LTR_Ngaro 485453 485989 175 + . . scaffold1896 WUBlastX LTR_Ngaro 485843 486064 68 + . . scaffold1896 WUBlastX LTR_Ngaro 485971 486243 59 + . . scaffold1896 WUBlastX LTR_Ngaro 486207 486317 48 + . . scaffold1896 WUBlastX LTR_Ngaro 486237 486332 25 + . . scaffold1896 GLEAN mRNA 498922 534617 0.237457 - . ID=CGI_10019653; scaffold1896 TRF Tandem_Repeat 500259 500317 66 + . . scaffold1896 TRF Tandem_Repeat 500265 500326 72 + . . scaffold1896 TRF Tandem_Repeat 506630 506660 53 + . . scaffold1896 TRF Tandem_Repeat 511523 511581 109 + . . scaffold1896 TRF Tandem_Repeat 515607 515662 94 + . . scaffold1896 GLEAN promoter 520719 521718 1 + . ID=CGI_10019654; scaffold1896 GLEAN mRNA 521719 526317 1 + . ID=CGI_10019654; scaffold1896 GLEAN promoter 534027 535026 0.320631 + . ID=CGI_10019655; scaffold1896 GLEAN promoter 534618 535617 0.237457 - . ID=CGI_10019653; scaffold1896 GLEAN mRNA 535027 544695 0.320631 + . ID=CGI_10019655; scaffold1896 TRF Tandem_Repeat 536280 537051 1289 + . . scaffold1896 TRF Tandem_Repeat 537244 537293 66 + . . scaffold1896 GLEAN mRNA 553652 554674 0.529528 - . ID=CGI_10019656; scaffold1896 GLEAN promoter 554675 555674 0.529528 - . ID=CGI_10019656; scaffold1896 GLEAN mRNA 567276 568352 0.82786 - . ID=CGI_10019657; scaffold1896 GLEAN promoter 568353 569352 0.82786 - . ID=CGI_10019657; scaffold1896 GLEAN mRNA 573779 587778 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 578224 578261 67 + . . scaffold1896 TRF Tandem_Repeat 579625 580129 672 + . . scaffold1896 TRF Tandem_Repeat 579625 580311 794 + . . scaffold1896 TRF Tandem_Repeat 579625 580311 794 + . . scaffold1896 TRF Tandem_Repeat 580131 580311 197 + . . scaffold1896 TRF Tandem_Repeat 583187 583436 446 + . . scaffold1896 TRF Tandem_Repeat 583219 583372 119 + . . scaffold1896 GLEAN promoter 587779 588778 0.607413 - . ID=CGI_10019658; scaffold1896 TRF Tandem_Repeat 594046 594210 303 + . . scaffold1896 TRF Tandem_Repeat 594290 594333 88 + . . scaffold1896 TRF Tandem_Repeat 594518 594571 108 + . . scaffold1896 TRF Tandem_Repeat 594598 594658 61 + . . scaffold1896 TRF Tandem_Repeat 594600 594658 68 + . . scaffold1896 TRF Tandem_Repeat 601325 601379 65 + . . scaffold1896 TRF Tandem_Repeat 602061 602197 87 + . . scaffold1896 TRF Tandem_Repeat 604908 605042 182 + . . scaffold1896 TRF Tandem_Repeat 606908 606947 80 + . . scaffold1896 TRF Tandem_Repeat 607606 607643 67 + . . scaffold1897 TRF Tandem_Repeat 4855 5174 518 + . . scaffold1897 GLEAN promoter 13531 14530 0.997662 + . ID=CGI_10020896; scaffold1897 GLEAN mRNA 14531 19239 0.997662 + . ID=CGI_10020896; scaffold1897 GLEAN promoter 25212 26211 0.481188 + . ID=CGI_10020898; scaffold1897 GLEAN mRNA 26179 26466 1 - . ID=CGI_10020897; scaffold1897 GLEAN mRNA 26212 26442 0.481188 + . ID=CGI_10020898; scaffold1897 GLEAN promoter 26467 27466 1 - . ID=CGI_10020897; scaffold1897 GLEAN mRNA 30264 34049 0.992387 - . ID=CGI_10020899; scaffold1897 GLEAN promoter 34050 35049 0.992387 - . ID=CGI_10020899; scaffold1897 TRF Tandem_Repeat 40036 40098 126 + . . scaffold1897 GLEAN mRNA 46105 47846 0.999824 - . ID=CGI_10020900; scaffold1897 GLEAN promoter 47847 48846 0.999824 - . ID=CGI_10020900; scaffold1897 TRF Tandem_Repeat 48901 48942 84 + . . scaffold1897 TRF Tandem_Repeat 48942 48968 54 + . . scaffold1897 GLEAN promoter 50431 51430 0.999695 + . ID=CGI_10020901; scaffold1897 GLEAN mRNA 51431 54333 0.999695 + . ID=CGI_10020901; scaffold1897 TRF Tandem_Repeat 58926 58979 90 + . . scaffold1897 TRF Tandem_Repeat 58926 58980 74 + . . scaffold1897 GLEAN mRNA 59198 60907 0.99242 - . ID=CGI_10020902; scaffold1897 GLEAN promoter 60908 61907 0.99242 - . ID=CGI_10020902; scaffold1897 TRF Tandem_Repeat 63989 64031 86 + . . scaffold1897 TRF Tandem_Repeat 68899 68943 90 + . . scaffold1897 GLEAN mRNA 69654 83136 0.999997 - . ID=CGI_10020903; scaffold1897 GLEAN promoter 83137 84136 0.999997 - . ID=CGI_10020903; scaffold1897 GLEAN promoter 96232 97231 0.998712 + . ID=CGI_10020904; scaffold1897 GLEAN mRNA 97232 100589 0.998712 + . ID=CGI_10020904; scaffold1897 GLEAN promoter 102299 103298 0.773213 + . ID=CGI_10020905; scaffold1897 GLEAN mRNA 103299 112372 0.773213 + . ID=CGI_10020905; scaffold1897 GLEAN mRNA 114360 117684 1 - . ID=CGI_10020906; scaffold1897 TRF Tandem_Repeat 117485 117522 76 + . . scaffold1897 GLEAN promoter 117685 118684 1 - . ID=CGI_10020906; scaffold1897 TRF Tandem_Repeat 118181 118212 64 + . . scaffold1897 GLEAN mRNA 118477 121658 1 - . ID=CGI_10020907; scaffold1897 GLEAN promoter 121659 122658 1 - . ID=CGI_10020907; scaffold1897 GLEAN mRNA 125277 127972 0.999922 - . ID=CGI_10020908; scaffold1897 GLEAN promoter 127280 128279 1 + . ID=CGI_10020909; scaffold1897 GLEAN promoter 127973 128972 0.999922 - . ID=CGI_10020908; scaffold1897 GLEAN mRNA 128280 132264 1 + . ID=CGI_10020909; scaffold1897 GLEAN mRNA 135996 145724 0.999676 - . ID=CGI_10020910; scaffold1897 GLEAN promoter 145725 146724 0.999676 - . ID=CGI_10020910; scaffold1897 GLEAN promoter 146725 147724 1 + . ID=CGI_10020911; scaffold1897 GLEAN mRNA 147725 158966 1 + . ID=CGI_10020911; scaffold1897 TRF Tandem_Repeat 160251 160729 579 + . . scaffold1897 TRF Tandem_Repeat 160251 160729 610 + . . scaffold1897 GLEAN mRNA 161987 164500 1 - . ID=CGI_10020912; scaffold1897 GLEAN promoter 163725 164724 0.999942 + . ID=CGI_10020913; scaffold1897 GLEAN promoter 164501 165500 1 - . ID=CGI_10020912; scaffold1897 GLEAN mRNA 164725 169431 0.999942 + . ID=CGI_10020913; scaffold1897 GLEAN mRNA 169371 170729 1 - . ID=CGI_10020914; scaffold1897 GLEAN promoter 170730 171729 1 - . ID=CGI_10020914; scaffold1897 GLEAN mRNA 173953 178624 0.593367 - . ID=CGI_10020915; scaffold1897 GLEAN promoter 178380 179379 1 + . ID=CGI_10020916; scaffold1897 GLEAN promoter 178625 179624 0.593367 - . ID=CGI_10020915; scaffold1897 GLEAN mRNA 179380 186496 1 + . ID=CGI_10020916; scaffold1897 GLEAN mRNA 190471 249775 0.317357 - . ID=CGI_10020917; scaffold1897 TRF Tandem_Repeat 194147 194576 572 + . . scaffold1897 TRF Tandem_Repeat 198132 198193 117 + . . scaffold1897 WUBlastX LINE_CR1 200054 200644 104 + . . scaffold1897 WUBlastX LINE_RTE-X 200171 201295 333 + . . scaffold1897 WUBlastX LINE_RTE-X 201296 201643 69 + . . scaffold1897 WUBlastX LINE_RTE-X 201610 201840 41 + . . scaffold1897 WUBlastX LINE_RTE-X 201622 201771 50 + . . scaffold1897 TRF Tandem_Repeat 202122 202281 176 + . . scaffold1897 TRF Tandem_Repeat 203850 203899 64 + . . scaffold1897 TRF Tandem_Repeat 210510 210559 100 + . . scaffold1897 TRF Tandem_Repeat 218822 219218 370 + . . scaffold1897 TRF Tandem_Repeat 218822 219218 286 + . . scaffold1897 TRF Tandem_Repeat 222286 222330 54 + . . scaffold1897 TRF Tandem_Repeat 222287 222330 61 + . . scaffold1897 TRF Tandem_Repeat 222448 222817 287 + . . scaffold1897 TRF Tandem_Repeat 222448 222817 357 + . . scaffold1897 TRF Tandem_Repeat 234486 234823 388 + . . scaffold1897 TRF Tandem_Repeat 235230 235296 107 + . . scaffold1897 TRF Tandem_Repeat 239753 240715 1351 + . . scaffold1897 GLEAN promoter 249776 250775 0.317357 - . ID=CGI_10020917; scaffold1897 GLEAN mRNA 251124 265766 0.999391 - . ID=CGI_10020918; scaffold1897 TRF Tandem_Repeat 259225 259294 140 + . . scaffold1897 TRF Tandem_Repeat 262547 262624 156 + . . scaffold1897 GLEAN promoter 265541 266540 0.679214 + . ID=CGI_10020919; scaffold1897 GLEAN promoter 265767 266766 0.999391 - . ID=CGI_10020918; scaffold1897 GLEAN mRNA 266541 278494 0.679214 + . ID=CGI_10020919; scaffold1897 TRF Tandem_Repeat 266929 266999 142 + . . scaffold1897 TRF Tandem_Repeat 268985 269056 65 + . . scaffold1897 GLEAN promoter 279451 280450 1 + . ID=CGI_10020920; scaffold1897 GLEAN mRNA 280451 284199 1 + . ID=CGI_10020920; scaffold1897 TRF Tandem_Repeat 280886 280936 102 + . . scaffold1897 TRF Tandem_Repeat 282606 282683 147 + . . scaffold1897 GLEAN promoter 287676 288675 0.999998 + . ID=CGI_10020921; scaffold1897 GLEAN mRNA 288676 295391 0.999998 + . ID=CGI_10020921; scaffold1897 GLEAN mRNA 299279 321713 0.997978 - . ID=CGI_10020922; scaffold1897 GLEAN promoter 305097 306096 1 + . ID=CGI_10020923; scaffold1897 GLEAN mRNA 306097 308817 1 + . ID=CGI_10020923; scaffold1897 TRF Tandem_Repeat 311433 311591 210 + . . scaffold1897 TRF Tandem_Repeat 311617 311804 243 + . . scaffold1897 TRF Tandem_Repeat 311617 311806 150 + . . scaffold1897 TRF Tandem_Repeat 311884 311970 106 + . . scaffold1897 TRF Tandem_Repeat 314618 314776 210 + . . scaffold1897 TRF Tandem_Repeat 314802 314991 150 + . . scaffold1897 TRF Tandem_Repeat 314802 314989 243 + . . scaffold1897 TRF Tandem_Repeat 315069 315155 106 + . . scaffold1897 GLEAN promoter 321714 322713 0.997978 - . ID=CGI_10020922; scaffold1897 TRF Tandem_Repeat 324214 324254 82 + . . scaffold1897 GLEAN promoter 324482 325481 1 + . ID=CGI_10020924; scaffold1897 TRF Tandem_Repeat 325426 325464 78 + . . scaffold1897 GLEAN mRNA 325482 333387 1 + . ID=CGI_10020924; scaffold1897 TRF Tandem_Repeat 331383 331430 78 + . . scaffold1897 TRF Tandem_Repeat 333814 333842 58 + . . scaffold1897 GLEAN promoter 333836 334835 1 + . ID=CGI_10020925; scaffold1897 GLEAN mRNA 334836 341709 1 + . ID=CGI_10020925; scaffold1897 TRF Tandem_Repeat 335296 335337 84 + . . scaffold1897 TRF Tandem_Repeat 340697 340722 52 + . . scaffold1897 TRF Tandem_Repeat 340722 340770 98 + . . scaffold1897 TRF Tandem_Repeat 342447 342477 53 + . . scaffold1897 GLEAN promoter 343179 344178 0.990508 + . ID=CGI_10020926; scaffold1897 GLEAN mRNA 344179 347455 0.990508 + . ID=CGI_10020926; scaffold1897 TRF Tandem_Repeat 352277 352314 51 + . . scaffold1897 TRF Tandem_Repeat 353709 354458 1138 + . . scaffold1897 WUBlastX LINE_L1-Tx1 358725 359366 320 + . . scaffold1897 WUBlastX LINE_L1-Tx1 359290 360102 257 + . . scaffold1897 WUBlastX LINE_L1-Tx1 360080 360901 662 + . . scaffold1897 WUBlastX LINE_L1 360131 361054 238 + . . scaffold1897 WUBlastX LINE_L1-Tx1 361635 361739 23 + . . scaffold1897 TRF Tandem_Repeat 366409 366589 131 + . . scaffold1897 TRF Tandem_Repeat 368617 368653 58 + . . scaffold1897 GLEAN promoter 370399 371398 0.579814 + . ID=CGI_10020927; scaffold1897 GLEAN mRNA 371399 382782 0.579814 + . ID=CGI_10020927; scaffold1897 TRF Tandem_Repeat 375340 375377 58 + . . scaffold1897 GLEAN mRNA 382690 387935 0.997194 - . ID=CGI_10020928; scaffold1897 TRF Tandem_Repeat 384613 384760 67 + . . scaffold1897 TRF Tandem_Repeat 384674 384756 59 + . . scaffold1897 TRF Tandem_Repeat 384676 384746 64 + . . scaffold1897 TRF Tandem_Repeat 384676 384746 67 + . . scaffold1897 TRF Tandem_Repeat 384692 384829 77 + . . scaffold1897 GLEAN promoter 387178 388177 0.59015 + . ID=CGI_10020929; scaffold1897 GLEAN promoter 387936 388935 0.997194 - . ID=CGI_10020928; scaffold1897 GLEAN mRNA 388178 388690 0.59015 + . ID=CGI_10020929; scaffold1897 GLEAN mRNA 388726 393701 0.99998 - . ID=CGI_10020930; scaffold1897 GLEAN promoter 393702 394701 0.99998 - . ID=CGI_10020930; scaffold1897 WUBlastX DNA_Kolobok 395960 396109 56 - . . scaffold1897 WUBlastX DNA_Kolobok 396032 396250 73 - . . scaffold1897 WUBlastX DNA_Kolobok 396384 396617 52 - . . scaffold1897 WUBlastX DNA_Kolobok 396420 396629 77 - . . scaffold1897 WUBlastX DNA_Kolobok 398784 399023 104 - . . scaffold1897 WUBlastX LTR_Gypsy 402068 402169 26 - . . scaffold1897 WUBlastX LTR_Gypsy 402724 402957 54 - . . scaffold1897 TRF Tandem_Repeat 408130 408645 358 + . . scaffold1897 TRF Tandem_Repeat 408139 408478 457 + . . scaffold1897 GLEAN mRNA 410724 425866 0.764565 - . ID=CGI_10020931; scaffold1897 GLEAN promoter 425867 426866 0.764565 - . ID=CGI_10020931; scaffold1897 WUBlastX LINE_RTE-BovB 428236 428400 94 + . . scaffold1897 WUBlastX LINE_RTE-BovB 428423 429052 354 + . . scaffold1897 WUBlastX LINE_CR1-L2 444661 445011 86 - . . scaffold1897 WUBlastX LINE_L2 444954 445304 95 - . . scaffold1897 WUBlastX LINE_L2 445026 445388 42 - . . scaffold1897 WUBlastX LINE_CR1-L2 445041 445304 172 - . . scaffold1897 WUBlastX LINE_L2 445053 445490 22 - . . scaffold1897 GLEAN promoter 448065 449064 0.708318 + . ID=CGI_10020932; scaffold1897 TRF Tandem_Repeat 448283 448355 137 + . . scaffold1897 GLEAN mRNA 449065 452959 0.708318 + . ID=CGI_10020932; scaffold1897 TRF Tandem_Repeat 451017 451065 75 + . . scaffold1897 GLEAN mRNA 455524 486844 0.998438 - . ID=CGI_10020933; scaffold1897 TRF Tandem_Repeat 465061 465104 56 + . . scaffold1897 GLEAN promoter 472997 473996 0.999675 + . ID=CGI_10020934; scaffold1897 GLEAN mRNA 473997 504484 0.999675 + . ID=CGI_10020934; scaffold1897 TRF Tandem_Repeat 480290 480372 112 + . . scaffold1897 TRF Tandem_Repeat 484899 484976 129 + . . scaffold1897 GLEAN promoter 486845 487844 0.998438 - . ID=CGI_10020933; scaffold1897 TRF Tandem_Repeat 493697 493737 82 + . . scaffold1897 TRF Tandem_Repeat 504244 504269 52 + . . scaffold1897 GLEAN mRNA 512810 514474 0.995257 - . ID=CGI_10020935; scaffold1897 GLEAN promoter 514475 515474 0.995257 - . ID=CGI_10020935; scaffold1897 TRF Tandem_Repeat 516437 516486 100 + . . scaffold1897 TRF Tandem_Repeat 523102 523134 66 + . . scaffold1897 GLEAN promoter 524712 525711 0.995373 + . ID=CGI_10020936; scaffold1897 TRF Tandem_Repeat 525578 525612 70 + . . scaffold1897 GLEAN mRNA 525712 527331 0.995373 + . ID=CGI_10020936; scaffold1897 WUBlastX DNA_hAT-hATw 526000 526482 25 + . . scaffold1897 TRF Tandem_Repeat 527597 527632 72 + . . scaffold1897 TRF Tandem_Repeat 530975 531027 106 + . . scaffold1897 GLEAN mRNA 538003 539610 0.528485 - . ID=CGI_10020937; scaffold1897 WUBlastX LINE_L1 538822 539352 24 - . . scaffold1897 GLEAN promoter 539611 540610 0.528485 - . ID=CGI_10020937; scaffold1897 GLEAN mRNA 545072 555734 0.810743 - . ID=CGI_10020938; scaffold1897 TRF Tandem_Repeat 548419 548465 85 + . . scaffold1897 TRF Tandem_Repeat 550201 550239 78 + . . scaffold1897 TRF Tandem_Repeat 551558 552155 780 + . . scaffold1897 GLEAN promoter 555735 556734 0.810743 - . ID=CGI_10020938; scaffold1897 TRF Tandem_Repeat 557887 557967 162 + . . scaffold1897 TRF Tandem_Repeat 561285 561334 91 + . . scaffold1897 GLEAN mRNA 563183 571663 1 - . ID=CGI_10020939; scaffold1897 GLEAN promoter 571664 572663 1 - . ID=CGI_10020939; scaffold1897 TRF Tandem_Repeat 573259 573297 78 + . . scaffold1897 TRF Tandem_Repeat 576187 576235 98 + . . scaffold1897 TRF Tandem_Repeat 579483 579521 69 + . . scaffold1897 TRF Tandem_Repeat 583611 584053 245 + . . scaffold1897 TRF Tandem_Repeat 587581 587808 163 + . . scaffold1897 TRF Tandem_Repeat 588082 589264 919 + . . scaffold1897 TRF Tandem_Repeat 588082 589264 1148 + . . scaffold1897 TRF Tandem_Repeat 588082 589264 1039 + . . scaffold1897 GLEAN promoter 592167 593166 0.998987 + . ID=CGI_10020940; scaffold1897 GLEAN mRNA 593167 597451 0.998987 + . ID=CGI_10020940; scaffold1897 TRF Tandem_Repeat 606301 606364 119 + . . scaffold1897 GLEAN promoter 610912 611911 1 + . ID=CGI_10020941; scaffold1897 GLEAN mRNA 611912 612355 1 + . ID=CGI_10020941; scaffold1897 GLEAN mRNA 614241 623043 1 - . ID=CGI_10020942; scaffold1897 GLEAN promoter 623044 624043 1 - . ID=CGI_10020942; scaffold1897 TRF Tandem_Repeat 623839 623884 92 + . . scaffold1897 GLEAN mRNA 624299 627793 0.630708 - . ID=CGI_10020943; scaffold1897 GLEAN promoter 627794 628793 0.630708 - . ID=CGI_10020943; scaffold1897 TRF Tandem_Repeat 630556 630875 319 + . . scaffold1897 TRF Tandem_Repeat 630596 630876 168 + . . scaffold1897 TRF Tandem_Repeat 630612 630875 327 + . . scaffold1897 TRF Tandem_Repeat 633374 633513 153 + . . scaffold1897 TRF Tandem_Repeat 637922 638757 1185 + . . scaffold1897 TRF Tandem_Repeat 640756 640791 72 + . . scaffold1897 WUBlastX DNA_PiggyBac 641537 641683 54 - . . scaffold1897 WUBlastX DNA_PiggyBac 641549 641635 57 - . . scaffold1897 WUBlastX DNA_PiggyBac 642548 642652 28 - . . scaffold1897 WUBlastX DNA_PiggyBac 642572 642652 37 - . . scaffold1897 WUBlastX DNA_PiggyBac 643000 643077 48 - . . scaffold1897 WUBlastX DNA_PiggyBac 643687 643776 22 - . . scaffold1897 WUBlastX DNA_PiggyBac 643796 644059 66 - . . scaffold1897 TRF Tandem_Repeat 645889 646007 102 + . . scaffold1897 TRF Tandem_Repeat 645942 646007 78 + . . scaffold1897 TRF Tandem_Repeat 646026 646084 73 + . . scaffold1897 WUBlastX LINE_L1-Tx1 656185 656427 118 + . . scaffold1897 WUBlastX LINE_L1 656197 656397 120 + . . scaffold1897 WUBlastX LINE_L1-Tx1 656571 657038 41 + . . scaffold1897 WUBlastX LINE_L1-Tx1 656938 657561 108 + . . scaffold1897 GLEAN promoter 659407 660406 0.840288 + . ID=CGI_10020944; scaffold1897 GLEAN mRNA 660407 662650 0.840288 + . ID=CGI_10020944; scaffold1897 GLEAN promoter 662414 663413 1 + . ID=CGI_10020945; scaffold1897 GLEAN mRNA 663414 665083 1 + . ID=CGI_10020945; scaffold1897 TRF Tandem_Repeat 668823 668976 116 + . . scaffold1898 GLEAN mRNA 3193 6607 0.593383 - . ID=CGI_10012203; scaffold1898 GLEAN promoter 6608 7607 0.593383 - . ID=CGI_10012203; scaffold1898 WUBlastX LINE_RTE-X 8226 8534 22 + . . scaffold1898 WUBlastX LINE_RTE-X 8316 8558 35 + . . scaffold1898 WUBlastX LINE_RTE-X 8379 8660 73 + . . scaffold1898 WUBlastX LINE_RTE-X 8382 8564 95 + . . scaffold1898 TRF Tandem_Repeat 14294 14363 126 + . . scaffold1898 GLEAN mRNA 17010 34248 0.999667 - . ID=CGI_10012204; scaffold1898 TRF Tandem_Repeat 26045 26084 80 + . . scaffold1898 TRF Tandem_Repeat 26212 26257 92 + . . scaffold1898 TRF Tandem_Repeat 27095 27321 400 + . . scaffold1898 TRF Tandem_Repeat 31474 31553 151 + . . scaffold1898 GLEAN promoter 34249 35248 0.999667 - . ID=CGI_10012204; scaffold1898 TRF Tandem_Repeat 34312 34355 88 + . . scaffold1898 TRF Tandem_Repeat 36897 37014 93 + . . scaffold1898 GLEAN promoter 41101 42100 1 + . ID=CGI_10012205; scaffold1898 GLEAN mRNA 42101 44869 1 + . ID=CGI_10012205; scaffold1898 GLEAN promoter 45863 46862 1 + . ID=CGI_10012206; scaffold1898 GLEAN mRNA 46863 55384 1 + . ID=CGI_10012206; scaffold1898 GLEAN mRNA 51712 80901 0.544574 - . ID=CGI_10012207; scaffold1898 WUBlastX DNA_hAT-Ac 53180 53332 49 - . . scaffold1898 TRF Tandem_Repeat 58849 59052 237 + . . scaffold1898 GLEAN promoter 80902 81901 0.544574 - . ID=CGI_10012207; scaffold1898 GLEAN mRNA 81193 83352 1 - . ID=CGI_10012208; scaffold1898 GLEAN promoter 83353 84352 1 - . ID=CGI_10012208; scaffold1898 TRF Tandem_Repeat 87327 87400 130 + . . scaffold1898 WUBlastX LINE_L2 90669 91076 106 - . . scaffold1898 GLEAN promoter 93464 94463 1 + . ID=CGI_10012209; scaffold1898 GLEAN mRNA 94464 95387 1 + . ID=CGI_10012209; scaffold1898 GLEAN mRNA 106379 115621 0.983729 - . ID=CGI_10012210; scaffold1898 GLEAN promoter 108853 109852 0.999377 + . ID=CGI_10012211; scaffold1898 GLEAN mRNA 109853 112082 0.999377 + . ID=CGI_10012211; scaffold1898 GLEAN promoter 115622 116621 0.983729 - . ID=CGI_10012210; scaffold1898 GLEAN mRNA 117852 129818 0.999913 - . ID=CGI_10012212; scaffold1898 GLEAN promoter 129819 130818 0.999913 - . ID=CGI_10012212; scaffold1898 TRF Tandem_Repeat 135046 135092 94 + . . scaffold1898 TRF Tandem_Repeat 154380 154449 140 + . . scaffold1898 TRF Tandem_Repeat 161115 161149 56 + . . scaffold1898 GLEAN mRNA 162974 163573 0.654722 - . ID=CGI_10012213; scaffold1898 GLEAN promoter 163574 164573 0.654722 - . ID=CGI_10012213; scaffold1898 TRF Tandem_Repeat 164716 164741 52 + . . scaffold1898 WUBlastX LINE_RTE-X 164966 166609 755 - . . scaffold1898 TRF Tandem_Repeat 170551 170592 84 + . . scaffold1898 GLEAN mRNA 170910 172164 0.830635 - . ID=CGI_10012214; scaffold1898 GLEAN promoter 172165 173164 0.830635 - . ID=CGI_10012214; scaffold1898 TRF Tandem_Repeat 178561 178602 84 + . . scaffold1898 TRF Tandem_Repeat 179265 179315 102 + . . scaffold1898 TRF Tandem_Repeat 181830 181873 88 + . . scaffold1898 TRF Tandem_Repeat 183151 183252 68 + . . scaffold1898 TRF Tandem_Repeat 183189 183253 78 + . . scaffold1898 TRF Tandem_Repeat 184121 184228 89 + . . scaffold1898 TRF Tandem_Repeat 184121 184227 51 + . . scaffold1898 TRF Tandem_Repeat 199654 199708 101 + . . scaffold1898 GLEAN mRNA 203254 207366 0.999997 - . ID=CGI_10012215; scaffold1898 GLEAN promoter 207367 208366 0.999997 - . ID=CGI_10012215; scaffold1898 TRF Tandem_Repeat 213359 213590 157 + . . scaffold1898 GLEAN mRNA 226662 227267 0.654722 - . ID=CGI_10012216; scaffold1898 GLEAN promoter 227268 228267 0.654722 - . ID=CGI_10012216; scaffold1898 TRF Tandem_Repeat 232863 232906 88 + . . scaffold1898 TRF Tandem_Repeat 235879 235981 174 + . . scaffold1898 TRF Tandem_Repeat 244817 246088 1467 + . . scaffold1898 GLEAN mRNA 247559 252521 1 - . ID=CGI_10012217; scaffold1898 GLEAN promoter 252522 253521 1 - . ID=CGI_10012217; scaffold1898 TRF Tandem_Repeat 254020 254062 86 + . . scaffold1898 TRF Tandem_Repeat 254062 254095 68 + . . scaffold1898 TRF Tandem_Repeat 255348 255411 119 + . . scaffold1898 TRF Tandem_Repeat 259681 259706 52 + . . scaffold1898 GLEAN mRNA 270533 270883 0.83621 - . ID=CGI_10012218; scaffold1898 GLEAN promoter 270884 271883 0.83621 - . ID=CGI_10012218; scaffold1898 GLEAN mRNA 275127 306325 0.999364 - . ID=CGI_10012219; scaffold1898 TRF Tandem_Repeat 292021 292050 51 + . . scaffold1898 GLEAN promoter 305186 306185 0.889712 + . ID=CGI_10012220; scaffold1898 GLEAN mRNA 306186 312813 0.889712 + . ID=CGI_10012220; scaffold1898 GLEAN promoter 306326 307325 0.999364 - . ID=CGI_10012219; scaffold1898 TRF Tandem_Repeat 308370 308408 78 + . . scaffold1898 WUBlastX LTR_Pao 309203 309916 673 - . . scaffold1898 WUBlastX LTR_Pao 309913 310449 247 - . . scaffold1898 WUBlastX LTR_Pao 310587 310769 21 - . . scaffold1898 WUBlastX LTR_Pao 310641 310742 35 - . . scaffold1898 WUBlastX LTR_Pao 310744 311604 663 - . . scaffold1898 WUBlastX LTR_Pao 311606 311746 127 - . . scaffold1898 WUBlastX LTR_Pao 311637 312104 135 - . . scaffold1898 WUBlastX LTR_Pao 311712 312143 379 - . . scaffold1898 WUBlastX LTR_Pao 312140 312454 173 - . . scaffold1898 WUBlastX LTR_Pao 312140 312553 100 - . . scaffold1898 WUBlastX LTR_DIRS 316936 317772 609 - . . scaffold1898 WUBlastX LTR_DIRS 317745 319139 1212 - . . scaffold1899 GLEAN promoter 3247 4246 0.571874 + . ID=CGI_10013609; scaffold1899 GLEAN mRNA 4247 5248 0.571874 + . ID=CGI_10013609; scaffold1899 TRF Tandem_Repeat 7829 7854 52 + . . scaffold1899 GLEAN mRNA 14432 17066 1 - . ID=CGI_10013610; scaffold1899 GLEAN promoter 17067 18066 1 - . ID=CGI_10013610; scaffold1899 TRF Tandem_Repeat 21100 21135 72 + . . scaffold1899 TRF Tandem_Repeat 26664 26704 82 + . . scaffold1899 TRF Tandem_Repeat 34189 34236 96 + . . scaffold1899 TRF Tandem_Repeat 39320 39369 73 + . . scaffold1899 TRF Tandem_Repeat 62316 62383 109 + . . scaffold1899 TRF Tandem_Repeat 62317 62383 79 + . . scaffold1899 TRF Tandem_Repeat 63827 63874 96 + . . scaffold1899 TRF Tandem_Repeat 66332 66363 64 + . . scaffold1899 GLEAN mRNA 67018 68667 0.712858 - . ID=CGI_10013611; scaffold1899 GLEAN promoter 68668 69667 0.712858 - . ID=CGI_10013611; scaffold1899 TRF Tandem_Repeat 69746 69777 64 + . . scaffold1899 TRF Tandem_Repeat 73921 73951 62 + . . scaffold1899 TRF Tandem_Repeat 78963 79445 476 + . . scaffold1899 TRF Tandem_Repeat 78991 79445 626 + . . scaffold1899 TRF Tandem_Repeat 80335 80524 197 + . . scaffold1899 TRF Tandem_Repeat 80523 80724 224 + . . scaffold1899 TRF Tandem_Repeat 81260 81306 94 + . . scaffold1899 TRF Tandem_Repeat 87037 87084 96 + . . scaffold1899 TRF Tandem_Repeat 99519 99559 82 + . . scaffold1899 TRF Tandem_Repeat 100083 100750 347 + . . scaffold1899 GLEAN mRNA 101120 127128 0.740208 - . ID=CGI_10013612; scaffold1899 TRF Tandem_Repeat 101222 101331 148 + . . scaffold1899 TRF Tandem_Repeat 101437 101757 245 + . . scaffold1899 TRF Tandem_Repeat 102550 103416 1484 + . . scaffold1899 TRF Tandem_Repeat 104967 105978 758 + . . scaffold1899 TRF Tandem_Repeat 104967 105978 838 + . . scaffold1899 TRF Tandem_Repeat 123026 123066 73 + . . scaffold1899 GLEAN promoter 127129 128128 0.740208 - . ID=CGI_10013612; scaffold1899 TRF Tandem_Repeat 130463 130506 88 + . . scaffold1899 TRF Tandem_Repeat 140428 140459 55 + . . scaffold1899 TRF Tandem_Repeat 147959 147989 53 + . . scaffold1899 TRF Tandem_Repeat 147989 148044 85 + . . scaffold1899 TRF Tandem_Repeat 154344 154600 451 + . . scaffold1899 TRF Tandem_Repeat 171059 171083 50 + . . scaffold1899 TRF Tandem_Repeat 171940 171975 72 + . . scaffold1899 TRF Tandem_Repeat 175112 175163 104 + . . scaffold1899 TRF Tandem_Repeat 185263 185312 66 + . . scaffold1899 TRF Tandem_Repeat 185482 186317 1296 + . . scaffold1899 TRF Tandem_Repeat 191330 191367 58 + . . scaffold1899 WUBlastX LINE_R2-Hero 204286 204609 92 + . . scaffold1899 WUBlastX DNA_TcMar-Tc1 204793 205068 47 - . . scaffold1899 WUBlastX DNA_Harbinger 209276 209785 227 + . . scaffold1899 WUBlastX LINE_R2-Hero 213755 213895 51 + . . scaffold1899 WUBlastX LINE_R2-Hero 213960 213995 31 + . . scaffold1899 WUBlastX LINE_R2-Hero 214195 214383 56 + . . scaffold1899 WUBlastX LINE_R2-Hero 214466 214720 87 + . . scaffold1899 WUBlastX LINE_R2-Hero 214514 214720 90 + . . scaffold1899 WUBlastX LINE_R2-Hero 214571 214825 72 + . . scaffold1899 WUBlastX LINE_R2-Hero 214571 214765 123 + . . scaffold1899 WUBlastX LTR_Pao 217292 217624 98 - . . scaffold1899 WUBlastX LTR_Pao 217354 217686 65 - . . scaffold1899 WUBlastX LINE_RTE-X 218005 218313 26 - . . scaffold1899 WUBlastX LINE_RTE-X 218265 218420 35 - . . scaffold1899 WUBlastX LINE_RTE-X 218714 218812 53 - . . scaffold1899 WUBlastX LINE_RTE-X 218720 218875 28 - . . scaffold1899 WUBlastX LINE_RTE-X 218729 218818 54 - . . scaffold1899 WUBlastX LINE_RTE-X 218818 218997 22 - . . scaffold1899 WUBlastX LINE_RTE-X 218994 219161 31 - . . scaffold1899 WUBlastX LINE_RTE-X 219000 219095 41 - . . scaffold1899 WUBlastX LINE_RTE-X 219120 219254 34 - . . scaffold1899 TRF Tandem_Repeat 219842 219889 78 + . . scaffold1899 WUBlastX LINE_RTE-BovB 219895 220233 79 - . . scaffold1899 WUBlastX LINE_RTE-BovB 219955 220254 136 - . . scaffold1899 WUBlastX LINE_RTE-BovB 220214 220327 48 - . . scaffold1899 WUBlastX LINE_RTE-BovB 220335 220640 178 - . . scaffold1899 WUBlastX LTR_DIRS 225675 226211 60 + . . scaffold1899 WUBlastX LTR_DIRS? 226374 226511 29 + . . scaffold1899 GLEAN mRNA 227915 236312 0.634371 - . ID=CGI_10013614; scaffold1899 TRF Tandem_Repeat 231785 232249 528 + . . scaffold1899 WUBlastX LINE_RTE-BovB 233535 233627 38 + . . scaffold1899 WUBlastX LINE_RTE-BovB 233632 234381 161 + . . scaffold1899 GLEAN promoter 236313 237312 0.634371 - . ID=CGI_10013614; scaffold1899 TRF Tandem_Repeat 238093 238123 62 + . . scaffold1899 GLEAN promoter 248006 249005 0.533568 + . ID=CGI_10013615; scaffold1899 GLEAN mRNA 249006 249608 0.533568 + . ID=CGI_10013615; scaffold1899 GLEAN promoter 251505 252504 0.435071 + . ID=CGI_10013617; scaffold1899 GLEAN mRNA 252311 263688 0.999676 - . ID=CGI_10013616; scaffold1899 GLEAN mRNA 252505 265918 0.435071 + . ID=CGI_10013617; scaffold1899 WUBlastX LINE_R2-Hero 257135 258826 628 - . . scaffold1899 WUBlastX LINE_R2-Hero 259230 259328 24 - . . scaffold1899 TRF Tandem_Repeat 260580 260627 96 + . . scaffold1899 GLEAN promoter 263689 264688 0.999676 - . ID=CGI_10013616; scaffold1899 GLEAN mRNA 265091 270133 1 - . ID=CGI_10013618; scaffold1899 GLEAN promoter 270134 271133 1 - . ID=CGI_10013618; scaffold1899 GLEAN promoter 271399 272398 0.999999 + . ID=CGI_10013619; scaffold1899 GLEAN mRNA 272399 273663 0.999999 + . ID=CGI_10013619; scaffold1899 GLEAN mRNA 274359 276031 0.836168 - . ID=CGI_10013620; scaffold1899 GLEAN promoter 276032 277031 0.836168 - . ID=CGI_10013620; scaffold1899 TRF Tandem_Repeat 276653 276710 109 + . . scaffold1899 GLEAN promoter 278964 279963 0.999351 + . ID=CGI_10013621; scaffold1899 GLEAN mRNA 279964 294548 0.999351 + . ID=CGI_10013621; scaffold1899 TRF Tandem_Repeat 283589 283916 448 + . . scaffold1899 GLEAN mRNA 296343 305874 1 - . ID=CGI_10013622; scaffold1899 TRF Tandem_Repeat 301870 302076 242 + . . scaffold1899 GLEAN promoter 305875 306874 1 - . ID=CGI_10013622; scaffold1899 TRF Tandem_Repeat 305921 305962 75 + . . scaffold1899 TRF Tandem_Repeat 307195 307226 55 + . . scaffold1899 TRF Tandem_Repeat 309802 309833 64 + . . scaffold1899 GLEAN mRNA 310082 312863 1 - . ID=CGI_10013623; scaffold1899 GLEAN promoter 312864 313863 1 - . ID=CGI_10013623; scaffold1899 TRF Tandem_Repeat 334657 334689 57 + . . scaffold1899 TRF Tandem_Repeat 337282 337327 85 + . . scaffold1899 GLEAN mRNA 337665 353171 0.650897 - . ID=CGI_10013624; scaffold1899 TRF Tandem_Repeat 344019 344080 70 + . . scaffold1899 TRF Tandem_Repeat 351212 351251 53 + . . scaffold1899 TRF Tandem_Repeat 351282 352136 1214 + . . scaffold1899 GLEAN promoter 353172 354171 0.650897 - . ID=CGI_10013624; scaffold1899 TRF Tandem_Repeat 358722 358748 54 + . . scaffold19 GLEAN mRNA 1584 15777 0.992163 - . ID=CGI_10010828; scaffold19 GLEAN promoter 15778 16777 0.992163 - . ID=CGI_10010828; scaffold19 GLEAN mRNA 16063 46278 0.494317 - . ID=CGI_10010829; scaffold19 TRF Tandem_Repeat 24724 24875 110 + . . scaffold19 TRF Tandem_Repeat 24773 25174 670 + . . scaffold19 TRF Tandem_Repeat 34377 35506 1345 + . . scaffold19 TRF Tandem_Repeat 35677 35708 55 + . . scaffold19 GLEAN promoter 46279 47278 0.494317 - . ID=CGI_10010829; scaffold19 GLEAN promoter 55923 56922 0.994286 + . ID=CGI_10010830; scaffold19 GLEAN mRNA 56923 62777 0.994286 + . ID=CGI_10010830; scaffold19 GLEAN mRNA 63221 66747 0.999945 - . ID=CGI_10010831; scaffold19 GLEAN promoter 65348 66347 1 + . ID=CGI_10010832; scaffold19 GLEAN mRNA 66348 77367 1 + . ID=CGI_10010832; scaffold19 GLEAN promoter 66748 67747 0.999945 - . ID=CGI_10010831; scaffold19 TRF Tandem_Repeat 76017 76069 106 + . . scaffold19 TRF Tandem_Repeat 79095 79130 72 + . . scaffold19 GLEAN promoter 91241 92240 1 + . ID=CGI_10010833; scaffold19 GLEAN mRNA 92241 93222 1 + . ID=CGI_10010833; scaffold19 WUBlastX LINE_RTE-X 95971 97077 173 + . . scaffold19 WUBlastX LINE_RTE-X 97001 98581 526 + . . scaffold19 TRF Tandem_Repeat 99680 99743 60 + . . scaffold19 GLEAN promoter 101907 102906 1 + . ID=CGI_10010834; scaffold19 GLEAN mRNA 102907 105898 1 + . ID=CGI_10010834; scaffold19 GLEAN mRNA 110764 112143 0.479007 - . ID=CGI_10010835; scaffold19 GLEAN promoter 112144 113143 0.479007 - . ID=CGI_10010835; scaffold19 GLEAN mRNA 112664 148277 0.596648 - . ID=CGI_10010836; scaffold19 TRF Tandem_Repeat 131454 132937 1436 + . . scaffold19 WUBlastX LTR_DIRS 138732 139592 143 - . . scaffold19 WUBlastX LTR_DIRS 139017 139592 196 - . . scaffold19 WUBlastX LTR_DIRS 139673 140113 140 - . . scaffold19 WUBlastX LTR_DIRS 140068 140769 233 - . . scaffold19 WUBlastX LTR_DIRS 140068 140583 329 - . . scaffold19 WUBlastX LTR_Gypsy 140706 140957 26 - . . scaffold19 WUBlastX LTR_Gypsy 140955 141047 26 - . . scaffold19 WUBlastX LTR_Gypsy 141409 141654 27 - . . scaffold19 GLEAN promoter 148278 149277 0.596648 - . ID=CGI_10010836; scaffold19 GLEAN promoter 150397 151396 0.999878 + . ID=CGI_10010837; scaffold19 GLEAN mRNA 151397 159937 0.999878 + . ID=CGI_10010837; scaffold19 WUBlastX DNA_TcMar-Tc1 152225 152605 157 - . . scaffold19 WUBlastX DNA_TcMar-Tc1 152225 152536 190 - . . scaffold19 WUBlastX DNA_TcMar-Tc1 152524 152664 39 - . . scaffold19 WUBlastX DNA_TcMar-Tc1 152530 152715 38 - . . scaffold19 WUBlastX DNA_TcMar-Tc1 152712 153317 96 - . . scaffold19 WUBlastX DNA_TcMar-Tc1 152712 153215 174 - . . scaffold19 TRF Tandem_Repeat 164059 164086 56 + . . scaffold19 GLEAN mRNA 166089 168952 0.999998 - . ID=CGI_10010838; scaffold19 GLEAN promoter 168953 169952 0.999998 - . ID=CGI_10010838; scaffold19 GLEAN promoter 168973 169972 0.999621 + . ID=CGI_10010839; scaffold19 GLEAN mRNA 169973 186200 0.999621 + . ID=CGI_10010839; scaffold19 WUBlastX LINE_L1 186429 186815 26 + . . scaffold19 GLEAN promoter 191266 192265 0.651568 + . ID=CGI_10010840; scaffold19 GLEAN mRNA 192266 206861 0.651568 + . ID=CGI_10010840; scaffold19 WUBlastX LTR_DIRS 197615 198004 54 + . . scaffold19 WUBlastX LTR_DIRS 198198 198278 35 + . . scaffold19 WUBlastX LTR_DIRS 198398 198976 218 + . . scaffold19 WUBlastX LTR_DIRS 198993 199169 43 + . . scaffold19 WUBlastX LTR_DIRS 198999 199436 41 + . . scaffold19 WUBlastX LTR_DIRS 199349 199603 51 + . . scaffold19 WUBlastX LTR_DIRS 199606 200037 129 + . . scaffold19 TRF Tandem_Repeat 200208 200554 300 + . . scaffold19 WUBlastX LTR_DIRS? 201053 201187 20 + . . scaffold19 WUBlastX LTR_DIRS 201080 201187 21 + . . scaffold19 WUBlastX LTR_DIRS? 201192 201338 78 + . . scaffold19 GLEAN mRNA 208617 218114 0.911458 - . ID=CGI_10010841; scaffold19 TRF Tandem_Repeat 209638 209835 360 + . . scaffold19 GLEAN promoter 217191 218190 1 + . ID=CGI_10010842; scaffold19 GLEAN promoter 218115 219114 0.911458 - . ID=CGI_10010841; scaffold19 GLEAN mRNA 218191 222752 1 + . ID=CGI_10010842; scaffold19 TRF Tandem_Repeat 224299 224424 150 + . . scaffold19 TRF Tandem_Repeat 224663 224717 110 + . . scaffold190 GLEAN promoter 2192 3191 0.999949 + . ID=CGI_10012222; scaffold190 GLEAN mRNA 3192 6812 0.999949 + . ID=CGI_10012222; scaffold190 GLEAN promoter 8777 9776 0.997665 + . ID=CGI_10012223; scaffold190 GLEAN mRNA 9777 15288 0.997665 + . ID=CGI_10012223; scaffold190 TRF Tandem_Repeat 13416 13482 98 + . . scaffold190 GLEAN mRNA 15506 30099 0.996279 - . ID=CGI_10012224; scaffold190 TRF Tandem_Repeat 22899 23404 271 + . . scaffold190 TRF Tandem_Repeat 22950 23386 618 + . . scaffold190 TRF Tandem_Repeat 26403 26445 86 + . . scaffold190 TRF Tandem_Repeat 27855 28123 256 + . . scaffold190 TRF Tandem_Repeat 27858 28123 156 + . . scaffold190 GLEAN promoter 30100 31099 0.996279 - . ID=CGI_10012224; scaffold190 WUBlastX LINE_L1 31937 32260 23 + . . scaffold190 WUBlastX LINE_L1-Tx1 32084 32239 62 + . . scaffold190 WUBlastX LINE_L1-Tx1 32156 32335 34 + . . scaffold190 WUBlastX LINE_L1 32159 32278 35 + . . scaffold190 WUBlastX LINE_L1-Tx1 32358 33080 161 + . . scaffold190 GLEAN mRNA 34073 40153 1 - . ID=CGI_10012225; scaffold190 TRF Tandem_Repeat 37186 37220 70 + . . scaffold190 GLEAN promoter 40154 41153 1 - . ID=CGI_10012225; scaffold190 TRF Tandem_Repeat 42693 42886 178 + . . scaffold190 TRF Tandem_Repeat 42829 45389 3368 + . . scaffold190 TRF Tandem_Repeat 47322 47368 94 + . . scaffold190 GLEAN mRNA 52865 54193 0.988982 - . ID=CGI_10012226; scaffold190 GLEAN promoter 54194 55193 0.988982 - . ID=CGI_10012226; scaffold190 GLEAN promoter 55939 56938 1 + . ID=CGI_10012227; scaffold190 GLEAN mRNA 56939 58132 1 + . ID=CGI_10012227; scaffold190 GLEAN mRNA 58921 67883 1 - . ID=CGI_10012228; scaffold190 GLEAN promoter 67651 68650 0.9852 + . ID=CGI_10012229; scaffold190 GLEAN promoter 67884 68883 1 - . ID=CGI_10012228; scaffold190 GLEAN mRNA 68651 79326 0.9852 + . ID=CGI_10012229; scaffold190 TRF Tandem_Repeat 73200 73255 112 + . . scaffold190 GLEAN promoter 81180 82179 0.499308 + . ID=CGI_10012230; scaffold190 GLEAN mRNA 82180 94742 0.499308 + . ID=CGI_10012230; scaffold190 GLEAN mRNA 86383 102024 0.999238 - . ID=CGI_10012231; scaffold190 TRF Tandem_Repeat 101051 101092 84 + . . scaffold190 GLEAN promoter 102025 103024 0.999238 - . ID=CGI_10012231; scaffold190 TRF Tandem_Repeat 113195 113287 159 + . . scaffold190 TRF Tandem_Repeat 113844 113960 189 + . . scaffold190 WUBlastX LINE_CR1-L2 114544 114672 44 + . . scaffold190 WUBlastX LINE_CR1-L2 114695 114835 31 + . . scaffold190 WUBlastX LINE_CR1-L2 115452 115688 21 + . . scaffold190 WUBlastX LINE_CR1-L2 115494 115688 33 + . . scaffold190 WUBlastX LINE_RTE-X 117521 118393 89 + . . scaffold190 TRF Tandem_Repeat 143621 143647 54 + . . scaffold190 TRF Tandem_Repeat 145521 145562 59 + . . scaffold190 TRF Tandem_Repeat 149184 149248 55 + . . scaffold190 TRF Tandem_Repeat 149302 149444 74 + . . scaffold190 TRF Tandem_Repeat 149302 149567 122 + . . scaffold190 TRF Tandem_Repeat 154297 154335 51 + . . scaffold190 TRF Tandem_Repeat 154300 154335 63 + . . scaffold190 WUBlastX LINE_Penelope 172400 172933 69 - . . scaffold190 WUBlastX LINE_Penelope 172670 172933 85 - . . scaffold190 WUBlastX LINE_Penelope 172887 173084 27 - . . scaffold190 GLEAN mRNA 174941 182579 0.971291 - . ID=CGI_10012232; scaffold190 GLEAN promoter 180303 181302 0.99942 + . ID=CGI_10012233; scaffold190 GLEAN mRNA 181303 184662 0.99942 + . ID=CGI_10012233; scaffold190 GLEAN promoter 182580 183579 0.971291 - . ID=CGI_10012232; scaffold190 WUBlastX LTR_DIRS 193601 193888 32 - . . scaffold190 WUBlastX LTR_DIRS 194167 194289 25 - . . scaffold190 WUBlastX LTR_DIRS 194191 194289 35 - . . scaffold190 WUBlastX LTR_DIRS 194345 194611 67 - . . scaffold190 WUBlastX LTR_DIRS 194405 194632 120 - . . scaffold190 WUBlastX LTR_DIRS 194655 195044 99 - . . scaffold190 TRF Tandem_Repeat 199846 199889 52 + . . scaffold190 GLEAN promoter 200737 201736 0.634123 + . ID=CGI_10012234; scaffold190 GLEAN mRNA 201737 202090 0.634123 + . ID=CGI_10012234; scaffold190 TRF Tandem_Repeat 203839 204241 558 + . . scaffold190 TRF Tandem_Repeat 204443 204982 829 + . . scaffold190 WUBlastX RC_Helitron 204985 205677 283 + . . scaffold190 WUBlastX RC_Helitron 205752 207668 884 + . . scaffold190 TRF Tandem_Repeat 207704 207747 88 + . . scaffold190 WUBlastX LINE_RTE-X 208383 208619 42 + . . scaffold190 WUBlastX LINE_RTE-X 208446 208640 62 + . . scaffold190 WUBlastX LINE_RTE-X 208476 208631 78 + . . scaffold190 WUBlastX LINE_RTE-X 208476 208661 72 + . . scaffold190 TRF Tandem_Repeat 213500 213552 97 + . . scaffold190 GLEAN mRNA 217427 221425 0.842066 - . ID=CGI_10012235; scaffold190 GLEAN promoter 217720 218719 0.279541 + . ID=CGI_10012236; scaffold190 GLEAN mRNA 218720 242617 0.279541 + . ID=CGI_10012236; scaffold190 GLEAN promoter 221426 222425 0.842066 - . ID=CGI_10012235; scaffold190 TRF Tandem_Repeat 224160 224332 134 + . . scaffold190 TRF Tandem_Repeat 240116 240249 241 + . . scaffold190 TRF Tandem_Repeat 245103 245919 909 + . . scaffold190 TRF Tandem_Repeat 245195 245919 920 + . . scaffold190 TRF Tandem_Repeat 251170 251220 102 + . . scaffold190 GLEAN promoter 251614 252613 0.999949 + . ID=CGI_10012237; scaffold190 GLEAN mRNA 252614 257851 0.999949 + . ID=CGI_10012237; scaffold190 TRF Tandem_Repeat 252619 252657 51 + . . scaffold190 TRF Tandem_Repeat 252795 253107 549 + . . scaffold190 TRF Tandem_Repeat 254288 254417 109 + . . scaffold190 TRF Tandem_Repeat 254834 255024 303 + . . scaffold190 TRF Tandem_Repeat 255178 255582 568 + . . scaffold190 GLEAN promoter 258890 259889 0.99976 + . ID=CGI_10012238; scaffold190 GLEAN mRNA 259890 262276 0.99976 + . ID=CGI_10012238; scaffold190 GLEAN promoter 270057 271056 0.088329 + . ID=CGI_10012239; scaffold190 GLEAN mRNA 271057 279073 0.088329 + . ID=CGI_10012239; scaffold190 TRF Tandem_Repeat 273051 273108 98 + . . scaffold190 TRF Tandem_Repeat 281646 281690 81 + . . scaffold190 WUBlastX DNA_IS4EU 307180 307344 113 + . . scaffold190 WUBlastX DNA_P 307865 308080 31 + . . scaffold190 WUBlastX DNA_P 307865 308035 42 + . . scaffold190 WUBlastX DNA_Kolobok-IS4 308721 308951 61 + . . scaffold190 WUBlastX DNA_Kolobok-IS4 308959 309933 636 + . . scaffold190 WUBlastX DNA_IS4EU 310295 310651 163 - . . scaffold190 WUBlastX DNA_Kolobok-IS4 311051 311188 24 - . . scaffold190 WUBlastX DNA_IS4EU 311075 311497 120 - . . scaffold190 WUBlastX DNA_IS4EU 311765 311974 26 - . . scaffold190 WUBlastX DNA_IS4EU 311768 311938 76 - . . scaffold190 WUBlastX DNA_IS4EU 312098 312220 48 - . . scaffold190 WUBlastX DNA_IS4EU 312559 312678 29 - . . scaffold190 TRF Tandem_Repeat 315058 315106 71 + . . scaffold190 TRF Tandem_Repeat 317013 317291 418 + . . scaffold190 TRF Tandem_Repeat 319552 319590 78 + . . scaffold1900 GLEAN promoter 1278 2277 1 + . ID=CGI_10017321; scaffold1900 GLEAN mRNA 2278 10558 1 + . ID=CGI_10017321; scaffold1900 GLEAN mRNA 2929 20446 0.615282 - . ID=CGI_10017322; scaffold1900 TRF Tandem_Repeat 6782 7605 897 + . . scaffold1900 TRF Tandem_Repeat 13713 15036 1381 + . . scaffold1900 GLEAN promoter 16727 17726 0.723538 + . ID=CGI_10017323; scaffold1900 GLEAN mRNA 17727 24416 0.723538 + . ID=CGI_10017323; scaffold1900 GLEAN promoter 20447 21446 0.615282 - . ID=CGI_10017322; scaffold1900 WUBlastX DNA_hAT 22276 22458 50 + . . scaffold1900 WUBlastX DNA_hAT 22351 22458 53 + . . scaffold1900 WUBlastX DNA_hAT 22610 22735 49 + . . scaffold1900 GLEAN promoter 30205 31204 0.753381 + . ID=CGI_10017324; scaffold1900 GLEAN mRNA 31205 32980 0.753381 + . ID=CGI_10017324; scaffold1900 TRF Tandem_Repeat 34715 34885 236 + . . scaffold1900 TRF Tandem_Repeat 34811 34999 75 + . . scaffold1900 GLEAN promoter 41587 42586 0.249831 + . ID=CGI_10017325; scaffold1900 GLEAN mRNA 42587 57859 0.249831 + . ID=CGI_10017325; scaffold1900 TRF Tandem_Repeat 46859 46912 108 + . . scaffold1900 WUBlastX DNA_Harbinger 49249 49521 160 - . . scaffold1900 WUBlastX DNA_hAT-hATw 60000 60284 29 - . . scaffold1900 WUBlastX LINE_L2 66286 66966 70 + . . scaffold1900 WUBlastX LINE_L2 66517 66966 116 + . . scaffold1900 WUBlastX LINE_L1 66541 67077 56 + . . scaffold1900 WUBlastX LINE_L1 66592 66987 196 + . . scaffold1900 WUBlastX LINE_RTE-X 67072 70329 973 + . . scaffold1900 WUBlastX LINE_RTE-X 69691 70452 147 + . . scaffold1900 TRF Tandem_Repeat 76572 76635 128 + . . scaffold1900 GLEAN promoter 83598 84597 0.997656 + . ID=CGI_10017326; scaffold1900 GLEAN mRNA 84598 86157 0.997656 + . ID=CGI_10017326; scaffold1900 GLEAN promoter 95262 96261 0.963778 + . ID=CGI_10017327; scaffold1900 GLEAN mRNA 96262 97104 0.963778 + . ID=CGI_10017327; scaffold1900 GLEAN mRNA 97448 104912 0.9947 - . ID=CGI_10017328; scaffold1900 GLEAN promoter 104913 105912 0.9947 - . ID=CGI_10017328; scaffold1900 TRF Tandem_Repeat 104920 104975 112 + . . scaffold1900 WUBlastX LINE_RTE-X 105564 105890 33 - . . scaffold1900 WUBlastX LINE_RTE-X 105979 106233 57 - . . scaffold1900 WUBlastX LINE_RTE-X 105988 106173 73 - . . scaffold1900 GLEAN promoter 110574 111573 0.641468 + . ID=CGI_10017329; scaffold1900 GLEAN mRNA 111574 134259 0.641468 + . ID=CGI_10017329; scaffold1900 GLEAN mRNA 112634 118778 1 - . ID=CGI_10017330; scaffold1900 GLEAN promoter 118779 119778 1 - . ID=CGI_10017330; scaffold1900 TRF Tandem_Repeat 125937 125988 104 + . . scaffold1900 TRF Tandem_Repeat 126765 126820 112 + . . scaffold1900 TRF Tandem_Repeat 131411 131468 91 + . . scaffold1900 TRF Tandem_Repeat 132798 133553 1047 + . . scaffold1900 TRF Tandem_Repeat 134423 134815 696 + . . scaffold1900 TRF Tandem_Repeat 136817 136887 142 + . . scaffold1900 GLEAN promoter 140266 141265 0.734569 + . ID=CGI_10017331; scaffold1900 GLEAN mRNA 141266 148696 0.734569 + . ID=CGI_10017331; scaffold1900 TRF Tandem_Repeat 175361 175613 290 + . . scaffold1900 GLEAN mRNA 176708 182629 1 - . ID=CGI_10017332; scaffold1900 GLEAN promoter 182630 183629 1 - . ID=CGI_10017332; scaffold1900 TRF Tandem_Repeat 185018 185058 82 + . . scaffold1900 WUBlastX LINE_RTE-X 187215 187616 90 - . . scaffold1900 WUBlastX LINE_RTE-X 187281 187637 95 - . . scaffold1900 WUBlastX LINE_RTE-X 187356 187640 161 - . . scaffold1900 GLEAN mRNA 189646 191629 0.999676 - . ID=CGI_10017333; scaffold1900 GLEAN promoter 191630 192629 0.999676 - . ID=CGI_10017333; scaffold1900 GLEAN mRNA 192258 219250 0.288241 - . ID=CGI_10017334; scaffold1900 TRF Tandem_Repeat 192681 193000 156 + . . scaffold1900 TRF Tandem_Repeat 194633 194696 119 + . . scaffold1900 GLEAN promoter 197012 198011 0.99869 + . ID=CGI_10017335; scaffold1900 GLEAN mRNA 198012 201043 0.99869 + . ID=CGI_10017335; scaffold1900 TRF Tandem_Repeat 210887 212232 1569 + . . scaffold1900 TRF Tandem_Repeat 212401 212452 50 + . . scaffold1900 TRF Tandem_Repeat 215549 215580 64 + . . scaffold1900 GLEAN promoter 219251 220250 0.288241 - . ID=CGI_10017334; scaffold1900 GLEAN promoter 219330 220329 0.728812 + . ID=CGI_10017336; scaffold1900 GLEAN mRNA 220330 234356 0.728812 + . ID=CGI_10017336; scaffold1900 TRF Tandem_Repeat 222625 222704 133 + . . scaffold1900 TRF Tandem_Repeat 222770 222825 51 + . . scaffold1900 TRF Tandem_Repeat 225388 225457 122 + . . scaffold1900 TRF Tandem_Repeat 237492 237534 79 + . . scaffold1900 TRF Tandem_Repeat 239209 239242 59 + . . scaffold1900 GLEAN promoter 255451 256450 0.757669 + . ID=CGI_10017337; scaffold1900 GLEAN mRNA 256451 258227 0.757669 + . ID=CGI_10017337; scaffold1900 TRF Tandem_Repeat 262167 262200 68 + . . scaffold1900 GLEAN mRNA 262775 271541 0.999978 - . ID=CGI_10017338; scaffold1900 GLEAN promoter 268833 269832 0.999117 + . ID=CGI_10017339; scaffold1900 GLEAN mRNA 269833 275375 0.999117 + . ID=CGI_10017339; scaffold1900 TRF Tandem_Repeat 270347 270381 70 + . . scaffold1900 GLEAN promoter 271542 272541 0.999978 - . ID=CGI_10017338; scaffold1900 TRF Tandem_Repeat 277358 277656 481 + . . scaffold1900 GLEAN mRNA 278128 280420 0.999978 - . ID=CGI_10017340; scaffold1900 TRF Tandem_Repeat 279378 279521 129 + . . scaffold1900 TRF Tandem_Repeat 279405 279611 87 + . . scaffold1900 GLEAN promoter 280421 281420 0.999978 - . ID=CGI_10017340; scaffold1900 GLEAN mRNA 280536 286710 0.990769 - . ID=CGI_10017341; scaffold1900 TRF Tandem_Repeat 281404 282014 476 + . . scaffold1900 TRF Tandem_Repeat 281448 281991 625 + . . scaffold1900 GLEAN promoter 286711 287710 0.990769 - . ID=CGI_10017341; scaffold1900 TRF Tandem_Repeat 288156 288190 70 + . . scaffold1900 TRF Tandem_Repeat 288314 288369 78 + . . scaffold1900 TRF Tandem_Repeat 290091 290147 114 + . . scaffold1900 TRF Tandem_Repeat 290192 290220 58 + . . scaffold1900 GLEAN promoter 296642 297641 0.733495 + . ID=CGI_10017342; scaffold1900 WUBlastX DNA_Harbinger 296985 297200 24 + . . scaffold1900 WUBlastX DNA_Harbinger 297202 297306 61 + . . scaffold1900 GLEAN mRNA 297642 297839 0.733495 + . ID=CGI_10017342; scaffold1900 GLEAN promoter 297973 298972 0.43669 + . ID=CGI_10017343; scaffold1900 GLEAN mRNA 298973 332459 0.43669 + . ID=CGI_10017343; scaffold1900 TRF Tandem_Repeat 299786 299846 122 + . . scaffold1900 TRF Tandem_Repeat 306707 306747 82 + . . scaffold1900 TRF Tandem_Repeat 316974 317950 835 + . . scaffold1900 GLEAN mRNA 334716 338723 0.875552 - . ID=CGI_10017344; scaffold1900 TRF Tandem_Repeat 338307 338386 160 + . . scaffold1900 GLEAN promoter 338724 339723 0.875552 - . ID=CGI_10017344; scaffold1900 GLEAN mRNA 348824 350940 0.836238 - . ID=CGI_10017345; scaffold1900 GLEAN promoter 350941 351940 0.836238 - . ID=CGI_10017345; scaffold1900 TRF Tandem_Repeat 354301 354352 72 + . . scaffold1900 TRF Tandem_Repeat 354301 354351 68 + . . scaffold1900 TRF Tandem_Repeat 361896 362331 692 + . . scaffold1900 TRF Tandem_Repeat 362948 363492 707 + . . scaffold1900 WUBlastX LTR_Gypsy-Cigr 364026 364505 72 + . . scaffold1900 WUBlastX LTR_Gypsy-Cigr 364035 364436 151 + . . scaffold1900 TRF Tandem_Repeat 369532 369677 124 + . . scaffold1900 TRF Tandem_Repeat 369579 369742 238 + . . scaffold1900 WUBlastX LINE_CR1-L2 374765 375835 82 - . . scaffold1900 WUBlastX LINE_RTE-X 374990 375946 166 - . . scaffold1900 WUBlastX LINE_RTE-X 375056 375832 185 - . . scaffold1900 GLEAN promoter 375389 376388 0.732644 + . ID=CGI_10017346; scaffold1900 GLEAN mRNA 376389 376954 0.732644 + . ID=CGI_10017346; scaffold1900 TRF Tandem_Repeat 377466 377881 472 + . . scaffold1900 TRF Tandem_Repeat 377473 377860 501 + . . scaffold1900 WUBlastX LTR_Gypsy 378460 378780 79 + . . scaffold1900 WUBlastX LTR_Gypsy-Cigr 378535 378786 108 + . . scaffold1900 WUBlastX LTR_Ngaro 379823 380260 90 + . . scaffold1900 WUBlastX LTR_Ngaro 380302 380457 30 + . . scaffold1900 WUBlastX LTR_Ngaro 380459 380599 37 + . . scaffold1900 WUBlastX LTR_Ngaro 380785 380910 22 + . . scaffold1900 WUBlastX LTR_Ngaro 380978 381190 24 + . . scaffold1900 WUBlastX LTR_Ngaro 381029 381190 59 + . . scaffold1900 TRF Tandem_Repeat 384488 384519 55 + . . scaffold1900 GLEAN mRNA 384856 401407 0.999777 - . ID=CGI_10017347; scaffold1900 WUBlastX LINE_L1-Tx1 391200 391724 286 + . . scaffold1900 WUBlastX LINE_L1-Tx1 391739 393091 233 + . . scaffold1900 WUBlastX LINE_L1 393093 393203 24 + . . scaffold1900 WUBlastX LINE_L1-Tx1 393126 393341 48 + . . scaffold1900 TRF Tandem_Repeat 396983 397024 50 + . . scaffold1900 GLEAN promoter 401408 402407 0.999777 - . ID=CGI_10017347; scaffold1900 WUBlastX LTR_Gypsy 403080 405236 927 + . . scaffold1900 WUBlastX LTR_Gypsy-Troyk 405100 405810 720 + . . scaffold1900 WUBlastX LTR_Gypsy 405133 405942 135 + . . scaffold1900 WUBlastX LTR_Gypsy-Troyk 406027 406473 406 + . . scaffold1900 WUBlastX LTR_Gypsy-Troyk 406458 407477 904 + . . scaffold1900 GLEAN promoter 406729 407728 0.695611 + . ID=CGI_10017348; scaffold1900 WUBlastX LTR_Gypsy-Troyk 407441 407986 118 + . . scaffold1900 GLEAN mRNA 407729 407989 0.695611 + . ID=CGI_10017348; scaffold1900 WUBlastX LTR_Gypsy 409855 409938 27 + . . scaffold1900 WUBlastX LTR_Gypsy 410122 411096 56 + . . scaffold1900 WUBlastX LTR_Ngaro 410299 411279 608 + . . scaffold1900 WUBlastX LTR_Ngaro 411302 411649 211 + . . scaffold1900 WUBlastX LTR_Ngaro 411302 411868 167 + . . scaffold1900 WUBlastX LTR_Ngaro 411844 412236 116 + . . scaffold1900 WUBlastX LTR_Ngaro 412256 412690 200 + . . scaffold1900 WUBlastX LTR_Ngaro 412256 412807 42 + . . scaffold1900 WUBlastX LINE_CR1 412953 413369 55 + . . scaffold1900 GLEAN promoter 425589 426588 0.99999 + . ID=CGI_10017349; scaffold1900 GLEAN mRNA 426589 437780 0.99999 + . ID=CGI_10017349; scaffold1900 TRF Tandem_Repeat 427749 427789 82 + . . scaffold1900 TRF Tandem_Repeat 428493 428704 325 + . . scaffold1900 TRF Tandem_Repeat 432425 432469 69 + . . scaffold1900 TRF Tandem_Repeat 432587 432631 65 + . . scaffold1900 TRF Tandem_Repeat 432732 432769 62 + . . scaffold1900 TRF Tandem_Repeat 432733 432766 50 + . . scaffold1900 GLEAN promoter 442915 443914 0.988203 + . ID=CGI_10017350; scaffold1900 GLEAN mRNA 443915 445805 0.988203 + . ID=CGI_10017350; scaffold1900 TRF Tandem_Repeat 448278 448315 67 + . . scaffold1900 TRF Tandem_Repeat 448324 449013 787 + . . scaffold1900 GLEAN mRNA 453938 455065 0.996199 - . ID=CGI_10017351; scaffold1900 GLEAN promoter 455066 456065 0.996199 - . ID=CGI_10017351; scaffold1900 TRF Tandem_Repeat 456378 456456 149 + . . scaffold1900 TRF Tandem_Repeat 459940 459985 74 + . . scaffold1900 TRF Tandem_Repeat 460552 460585 68 + . . scaffold1900 GLEAN promoter 460704 461703 0.999982 + . ID=CGI_10017352; scaffold1900 TRF Tandem_Repeat 461178 461207 60 + . . scaffold1900 GLEAN mRNA 461704 470012 0.999982 + . ID=CGI_10017352; scaffold1900 TRF Tandem_Repeat 462151 462203 106 + . . scaffold1900 TRF Tandem_Repeat 463684 463746 126 + . . scaffold1900 TRF Tandem_Repeat 468054 468143 171 + . . scaffold1900 WUBlastX LINE_RTE-X 481646 481777 35 + . . scaffold1900 WUBlastX LINE_RTE-X 481792 482085 28 + . . scaffold1900 TRF Tandem_Repeat 485021 485232 104 + . . scaffold1900 TRF Tandem_Repeat 485229 485375 97 + . . scaffold1900 TRF Tandem_Repeat 485378 485770 347 + . . scaffold1900 GLEAN mRNA 485896 487313 0.486453 - . ID=CGI_10017353; scaffold1900 TRF Tandem_Repeat 486070 486351 265 + . . scaffold1900 GLEAN promoter 487314 488313 0.486453 - . ID=CGI_10017353; scaffold1900 TRF Tandem_Repeat 491719 491770 104 + . . scaffold1900 TRF Tandem_Repeat 492017 492063 94 + . . scaffold1900 TRF Tandem_Repeat 492387 492450 128 + . . scaffold1901 GLEAN promoter 1 267 1 + . ID=CGI_10015543; scaffold1901 TRF Tandem_Repeat 4 257 114 + . . scaffold1901 GLEAN mRNA 268 5787 1 + . ID=CGI_10015543; scaffold1901 TRF Tandem_Repeat 5851 5880 51 + . . scaffold1901 TRF Tandem_Repeat 7338 7414 118 + . . scaffold1901 WUBlastX LINE_CR1-L2 20229 21311 256 + . . scaffold1901 WUBlastX LINE_CR1-L2 21247 22398 152 + . . scaffold1901 WUBlastX LINE_CR1-L2 21247 21681 166 + . . scaffold1901 GLEAN promoter 23618 24617 0.999515 + . ID=CGI_10015544; scaffold1901 GLEAN mRNA 24618 25315 0.999515 + . ID=CGI_10015544; scaffold1901 TRF Tandem_Repeat 27077 27135 118 + . . scaffold1901 TRF Tandem_Repeat 32306 32663 270 + . . scaffold1901 WUBlastX LINE_RTE-X 45481 45708 36 + . . scaffold1901 GLEAN mRNA 49874 58303 0.99891 - . ID=CGI_10015545; scaffold1901 TRF Tandem_Repeat 58079 58121 54 + . . scaffold1901 GLEAN promoter 58304 59303 0.99891 - . ID=CGI_10015545; scaffold1901 TRF Tandem_Repeat 65531 65591 122 + . . scaffold1901 TRF Tandem_Repeat 70532 70597 109 + . . scaffold1901 GLEAN mRNA 77944 93624 0.807176 - . ID=CGI_10015546; scaffold1901 TRF Tandem_Repeat 78181 78217 74 + . . scaffold1901 TRF Tandem_Repeat 80798 80842 90 + . . scaffold1901 TRF Tandem_Repeat 82736 82771 63 + . . scaffold1901 TRF Tandem_Repeat 83499 83540 75 + . . scaffold1901 TRF Tandem_Repeat 89760 89805 92 + . . scaffold1901 GLEAN promoter 93625 94624 0.807176 - . ID=CGI_10015546; scaffold1901 TRF Tandem_Repeat 93900 93956 114 + . . scaffold1901 GLEAN mRNA 94550 94753 0.999372 - . ID=CGI_10015547; scaffold1901 GLEAN promoter 94754 95753 0.999372 - . ID=CGI_10015547; scaffold1901 TRF Tandem_Repeat 98532 98578 94 + . . scaffold1901 TRF Tandem_Repeat 108687 108733 94 + . . scaffold1901 TRF Tandem_Repeat 118165 118227 112 + . . scaffold1901 GLEAN mRNA 126536 127604 1 - . ID=CGI_10015548; scaffold1901 GLEAN promoter 127605 128604 1 - . ID=CGI_10015548; scaffold1901 TRF Tandem_Repeat 128564 128616 90 + . . scaffold1901 TRF Tandem_Repeat 133945 133987 86 + . . scaffold1901 TRF Tandem_Repeat 142609 142658 100 + . . scaffold1901 TRF Tandem_Repeat 147496 147546 102 + . . scaffold1901 GLEAN promoter 157836 158835 0.978071 + . ID=CGI_10015549; scaffold1901 GLEAN mRNA 158836 169759 0.978071 + . ID=CGI_10015549; scaffold1901 TRF Tandem_Repeat 170549 170585 65 + . . scaffold1901 TRF Tandem_Repeat 180128 180257 170 + . . scaffold1901 TRF Tandem_Repeat 181731 181781 102 + . . scaffold1901 GLEAN promoter 186797 187796 1 + . ID=CGI_10015550; scaffold1901 GLEAN mRNA 187797 197250 1 + . ID=CGI_10015550; scaffold1901 TRF Tandem_Repeat 189291 189372 155 + . . scaffold1901 GLEAN mRNA 204769 218105 0.999664 - . ID=CGI_10015551; scaffold1901 TRF Tandem_Repeat 215401 215437 74 + . . scaffold1901 GLEAN promoter 218106 219105 0.999664 - . ID=CGI_10015551; scaffold1901 TRF Tandem_Repeat 219457 219501 90 + . . scaffold1901 WUBlastX LINE_RTE-X 222073 222333 59 - . . scaffold1901 TRF Tandem_Repeat 222589 222651 126 + . . scaffold1901 GLEAN mRNA 225422 236696 0.999249 - . ID=CGI_10015552; scaffold1901 GLEAN promoter 236697 237696 0.999249 - . ID=CGI_10015552; scaffold1901 TRF Tandem_Repeat 240078 240118 82 + . . scaffold1901 GLEAN promoter 251164 252163 0.808709 + . ID=CGI_10015553; scaffold1901 GLEAN mRNA 252164 286319 0.808709 + . ID=CGI_10015553; scaffold1901 TRF Tandem_Repeat 272930 272961 64 + . . scaffold1901 GLEAN promoter 290986 291985 0.968469 + . ID=CGI_10015554; scaffold1901 GLEAN mRNA 291986 309375 0.968469 + . ID=CGI_10015554; scaffold1901 TRF Tandem_Repeat 317287 317356 133 + . . scaffold1901 GLEAN mRNA 318340 318720 1 - . ID=CGI_10015555; scaffold1901 GLEAN promoter 318403 319402 0.992515 + . ID=CGI_10015556; scaffold1901 GLEAN promoter 318721 319720 1 - . ID=CGI_10015555; scaffold1901 GLEAN mRNA 319403 331307 0.992515 + . ID=CGI_10015556; scaffold1901 TRF Tandem_Repeat 330686 330721 72 + . . scaffold1901 GLEAN mRNA 330928 344084 0.391844 - . ID=CGI_10015557; scaffold1901 GLEAN promoter 344085 345084 0.391844 - . ID=CGI_10015557; scaffold1901 GLEAN mRNA 344141 349282 0.999675 - . ID=CGI_10015558; scaffold1901 GLEAN promoter 349250 350249 0.496611 + . ID=CGI_10015559; scaffold1901 GLEAN promoter 349283 350282 0.999675 - . ID=CGI_10015558; scaffold1901 GLEAN mRNA 350250 350896 0.496611 + . ID=CGI_10015559; scaffold1901 WUBlastX LINE_R2-Hero 351170 352087 316 - . . scaffold1901 GLEAN promoter 351806 352805 0.992753 + . ID=CGI_10015561; scaffold1901 GLEAN mRNA 352468 355591 0.999999 - . ID=CGI_10015560; scaffold1901 GLEAN mRNA 352806 362279 0.992753 + . ID=CGI_10015561; scaffold1901 GLEAN promoter 355592 356591 0.999999 - . ID=CGI_10015560; scaffold1901 GLEAN mRNA 362777 392141 0.0368766 - . ID=CGI_10015562; scaffold1901 GLEAN promoter 367560 368559 0.99958 + . ID=CGI_10015563; scaffold1901 GLEAN mRNA 368560 372777 0.99958 + . ID=CGI_10015563; scaffold1901 TRF Tandem_Repeat 372204 372480 385 + . . scaffold1901 TRF Tandem_Repeat 372204 372480 337 + . . scaffold1901 GLEAN promoter 383677 384676 0.999256 + . ID=CGI_10015564; scaffold1901 GLEAN mRNA 384677 389705 0.999256 + . ID=CGI_10015564; scaffold1901 TRF Tandem_Repeat 388883 389038 276 + . . scaffold1901 GLEAN promoter 392142 393141 0.0368766 - . ID=CGI_10015562; scaffold1901 GLEAN promoter 396044 397043 0.993238 + . ID=CGI_10015565; scaffold1901 GLEAN mRNA 397044 398870 0.993238 + . ID=CGI_10015565; scaffold1901 WUBlastX LINE_L2 409943 410437 36 - . . scaffold1901 WUBlastX LINE_L2 410000 410404 132 - . . scaffold1901 TRF Tandem_Repeat 411501 411531 62 + . . scaffold1901 GLEAN promoter 411938 412937 0.479201 + . ID=CGI_10015566; scaffold1901 GLEAN mRNA 412938 416717 0.479201 + . ID=CGI_10015566; scaffold1901 TRF Tandem_Repeat 414248 414281 59 + . . scaffold1901 TRF Tandem_Repeat 415430 415477 73 + . . scaffold1901 GLEAN mRNA 421480 430318 1 - . ID=CGI_10015567; scaffold1901 GLEAN promoter 430319 431318 1 - . ID=CGI_10015567; scaffold1901 GLEAN mRNA 430388 430841 1 - . ID=CGI_10015568; scaffold1901 GLEAN promoter 430842 431841 1 - . ID=CGI_10015568; scaffold191 WUBlastX DNA_IS4EU 318 695 41 + . . scaffold191 WUBlastX DNA_IS4EU 694 813 45 + . . scaffold191 WUBlastX DNA_IS4EU 1440 1676 49 + . . scaffold191 WUBlastX DNA_IS4EU 1712 1822 29 + . . scaffold191 WUBlastX DNA_Kolobok-IS4 1819 2163 82 + . . scaffold191 WUBlastX DNA_IS4EU 2954 3868 406 - . . scaffold191 WUBlastX DNA_P 4805 5017 49 - . . scaffold191 WUBlastX DNA_Kolobok-IS4 4844 5017 69 - . . scaffold191 TRF Tandem_Repeat 10274 10314 73 + . . scaffold191 TRF Tandem_Repeat 16068 16222 202 + . . scaffold191 WUBlastX DNA_hAT-Tip100 17356 17685 51 + . . scaffold191 WUBlastX DNA_hAT-Tip100 17449 17703 115 + . . scaffold191 WUBlastX DNA_hAT-Tip100 17470 17682 130 + . . scaffold191 WUBlastX RC_Helitron 18461 18739 25 + . . scaffold191 WUBlastX RC_Helitron 18665 19213 43 + . . scaffold191 WUBlastX RC_Helitron 18773 19210 49 + . . scaffold191 WUBlastX RC_Helitron 18866 19228 97 + . . scaffold191 WUBlastX DNA_Helitron 19189 19620 191 + . . scaffold191 WUBlastX RC_Helitron 19198 19695 181 + . . scaffold191 GLEAN promoter 19676 20675 0.648639 + . ID=CGI_10022408; scaffold191 GLEAN mRNA 20676 22231 0.648639 + . ID=CGI_10022408; scaffold191 WUBlastX LTR_Gypsy 24134 24355 67 + . . scaffold191 WUBlastX LTR_Gypsy 24173 27286 1401 + . . scaffold191 WUBlastX LTR_Gypsy 26354 27727 611 + . . scaffold191 WUBlastX DNA_En-Spm 50439 50882 277 + . . scaffold191 WUBlastX DNA_En-Spm 50846 50899 32 + . . scaffold191 WUBlastX DNA_En-Spm 51763 52041 43 + . . scaffold191 WUBlastX DNA_En-Spm 51847 52875 756 + . . scaffold191 WUBlastX DNA_En-Spm 51982 53061 55 + . . scaffold191 WUBlastX DNA_En-Spm 53066 53536 149 + . . scaffold191 TRF Tandem_Repeat 55263 57855 3418 + . . scaffold191 TRF Tandem_Repeat 55263 57826 3510 + . . scaffold191 GLEAN mRNA 59366 66619 0.998524 - . ID=CGI_10022409; scaffold191 TRF Tandem_Repeat 64873 65004 129 + . . scaffold191 TRF Tandem_Repeat 64874 64997 135 + . . scaffold191 WUBlastX DNA_NOF? 65015 65248 71 + . . scaffold191 TRF Tandem_Repeat 65407 65479 103 + . . scaffold191 GLEAN promoter 66620 67619 0.998524 - . ID=CGI_10022409; scaffold191 GLEAN mRNA 67897 82579 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 72425 72685 283 + . . scaffold191 TRF Tandem_Repeat 72471 72689 287 + . . scaffold191 TRF Tandem_Repeat 72471 72724 325 + . . scaffold191 TRF Tandem_Repeat 73540 73758 222 + . . scaffold191 TRF Tandem_Repeat 74534 74779 233 + . . scaffold191 TRF Tandem_Repeat 74951 75150 235 + . . scaffold191 TRF Tandem_Repeat 75721 75906 188 + . . scaffold191 GLEAN promoter 82580 83579 0.360262 - . ID=CGI_10022410; scaffold191 TRF Tandem_Repeat 85172 85281 65 + . . scaffold191 WUBlastX LINE_RTE-X 87680 88369 94 + . . scaffold191 WUBlastX LINE_RTE-X 87836 88237 138 + . . scaffold191 WUBlastX LINE_RTE-X 87836 88318 105 + . . scaffold191 WUBlastX LINE_RTE-BovB 92756 92932 78 - . . scaffold191 WUBlastX LTR_Gypsy 95134 95367 32 + . . scaffold191 WUBlastX LTR_Gypsy 95179 95535 30 + . . scaffold191 TRF Tandem_Repeat 107791 107865 73 + . . scaffold191 TRF Tandem_Repeat 107797 107862 89 + . . scaffold191 GLEAN promoter 128352 129351 0.994501 + . ID=CGI_10022412; scaffold191 GLEAN mRNA 129352 130371 0.994501 + . ID=CGI_10022412; scaffold191 WUBlastX LTR_Ngaro 133479 133895 205 + . . scaffold191 GLEAN mRNA 154412 157519 0.856049 - . ID=CGI_10022413; scaffold191 GLEAN promoter 157520 158519 0.856049 - . ID=CGI_10022413; scaffold191 TRF Tandem_Repeat 159375 159417 86 + . . scaffold191 TRF Tandem_Repeat 161101 161163 60 + . . scaffold191 GLEAN mRNA 173889 184742 0.717223 - . ID=CGI_10022414; scaffold191 TRF Tandem_Repeat 174687 174751 58 + . . scaffold191 WUBlastX LINE_CR1-L2 181760 182359 243 + . . scaffold191 WUBlastX LINE_CR1-L2 182326 182415 21 + . . scaffold191 GLEAN promoter 184743 185742 0.717223 - . ID=CGI_10022414; scaffold191 TRF Tandem_Repeat 194170 194213 61 + . . scaffold191 TRF Tandem_Repeat 195233 195268 63 + . . scaffold191 GLEAN promoter 203105 204104 0.473512 + . ID=CGI_10022415; scaffold191 GLEAN mRNA 204105 204359 0.473512 + . ID=CGI_10022415; scaffold191 WUBlastX DNA_Kolobok 204658 204876 21 + . . scaffold191 WUBlastX DNA_Kolobok 205129 205314 54 + . . scaffold191 WUBlastX DNA_Kolobok 205168 205314 65 + . . scaffold191 WUBlastX DNA_Kolobok 205595 205765 104 - . . scaffold191 GLEAN mRNA 205783 209379 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX DNA_Kolobok 205828 206040 69 - . . scaffold191 WUBlastX DNA_Kolobok 206071 206409 74 - . . scaffold191 WUBlastX DNA_Kolobok 206131 206391 93 - . . scaffold191 WUBlastX DNA_Kolobok 206517 206717 76 - . . scaffold191 WUBlastX DNA_Kolobok 206517 206783 40 - . . scaffold191 WUBlastX DNA_Kolobok 206833 207351 226 - . . scaffold191 WUBlastX LINE_I 209083 209229 21 - . . scaffold191 WUBlastX LINE_R2 209176 209322 21 - . . scaffold191 GLEAN promoter 209380 210379 0.997333 - . ID=CGI_10022416; scaffold191 WUBlastX LINE_RTE-BovB 210112 210435 110 - . . scaffold191 WUBlastX LINE_RTE-X 210169 210432 189 - . . scaffold191 WUBlastX LINE_RTE-X 210432 211040 199 - . . scaffold191 WUBlastX LINE_RTE-X 210753 211091 58 - . . scaffold191 WUBlastX LINE_Jockey 211142 211264 22 - . . scaffold191 TRF Tandem_Repeat 213070 213157 95 + . . scaffold191 WUBlastX LINE_L1 213236 213949 240 - . . scaffold191 TRF Tandem_Repeat 217539 217590 59 + . . scaffold191 TRF Tandem_Repeat 217551 217643 82 + . . scaffold191 TRF Tandem_Repeat 217563 217646 80 + . . scaffold191 GLEAN mRNA 217720 225113 0.99515 - . ID=CGI_10022417; scaffold191 TRF Tandem_Repeat 221977 222013 56 + . . scaffold191 GLEAN promoter 225114 226113 0.99515 - . ID=CGI_10022417; scaffold191 GLEAN promoter 273234 274233 0.762164 + . ID=CGI_10022418; scaffold191 GLEAN mRNA 274234 281343 0.762164 + . ID=CGI_10022418; scaffold191 TRF Tandem_Repeat 284469 284557 101 + . . scaffold191 TRF Tandem_Repeat 284469 284563 55 + . . scaffold191 TRF Tandem_Repeat 284473 284563 96 + . . scaffold191 TRF Tandem_Repeat 284659 284720 65 + . . scaffold191 TRF Tandem_Repeat 284662 284720 54 + . . scaffold191 TRF Tandem_Repeat 289815 289847 57 + . . scaffold191 WUBlastX DNA_TcMar-Tc1 304550 304840 86 + . . scaffold191 TRF Tandem_Repeat 336647 336681 70 + . . scaffold191 WUBlastX LINE_RTE-BovB 337878 338447 319 - . . scaffold191 WUBlastX LINE_RTE-BovB 338446 338757 34 - . . scaffold191 WUBlastX LINE_RTE-BovB 338446 338550 48 - . . scaffold191 TRF Tandem_Repeat 339214 339265 95 + . . scaffold191 WUBlastX LINE_RTE-BovB 339388 339447 22 - . . scaffold191 WUBlastX LTR_DIRS 375896 376324 53 - . . scaffold191 WUBlastX LINE_L2 384183 384956 110 + . . scaffold191 WUBlastX LINE_L2 384324 385022 242 + . . scaffold191 WUBlastX LINE_L2 384456 385016 309 + . . scaffold191 WUBlastX LINE_L2 384966 385070 22 + . . scaffold191 WUBlastX LINE_L2 385051 385689 243 + . . scaffold191 WUBlastX LTR_Gypsy 386930 387649 241 - . . scaffold191 WUBlastX LTR_Gypsy 387242 387649 258 - . . scaffold191 TRF Tandem_Repeat 410638 410684 94 + . . scaffold191 TRF Tandem_Repeat 411725 411757 57 + . . scaffold191 TRF Tandem_Repeat 412257 412381 135 + . . scaffold191 TRF Tandem_Repeat 412258 412376 82 + . . scaffold191 GLEAN promoter 425614 426613 0.573337 + . ID=CGI_10022419; scaffold191 GLEAN mRNA 426614 426895 0.573337 + . ID=CGI_10022419; scaffold191 TRF Tandem_Repeat 439095 439161 89 + . . scaffold191 TRF Tandem_Repeat 439663 439687 50 + . . scaffold191 WUBlastX DNA_TcMar-Pogo 453588 454577 665 - . . scaffold191 WUBlastX DNA_TcMar-Tigge 454562 454681 21 - . . scaffold191 GLEAN promoter 456369 457368 0.448271 + . ID=CGI_10022420; scaffold191 GLEAN mRNA 457369 458895 0.448271 + . ID=CGI_10022420; scaffold191 GLEAN mRNA 463385 469432 0.999995 - . ID=CGI_10022421; scaffold191 GLEAN promoter 469433 470432 0.999995 - . ID=CGI_10022421; scaffold191 TRF Tandem_Repeat 476026 476087 81 + . . scaffold191 TRF Tandem_Repeat 479681 479725 90 + . . scaffold191 GLEAN mRNA 480943 496951 0.999351 - . ID=CGI_10022422; scaffold191 TRF Tandem_Repeat 487595 487662 82 + . . scaffold191 TRF Tandem_Repeat 491427 491510 114 + . . scaffold191 TRF Tandem_Repeat 494382 494411 60 + . . scaffold191 GLEAN promoter 494800 495799 1 + . ID=CGI_10022423; scaffold191 GLEAN mRNA 495800 497014 1 + . ID=CGI_10022423; scaffold191 GLEAN promoter 496952 497951 0.999351 - . ID=CGI_10022422; scaffold191 TRF Tandem_Repeat 500075 500125 93 + . . scaffold191 TRF Tandem_Repeat 503295 503349 103 + . . scaffold191 TRF Tandem_Repeat 503539 504004 621 + . . scaffold191 GLEAN mRNA 504047 509331 1 - . ID=CGI_10022424; scaffold191 GLEAN promoter 509332 510331 1 - . ID=CGI_10022424; scaffold191 WUBlastX DNA_hAT-Tip100 511911 512087 50 - . . scaffold191 GLEAN mRNA 512204 516179 1 - . ID=CGI_10022425; scaffold191 GLEAN promoter 516180 517179 1 - . ID=CGI_10022425; scaffold191 TRF Tandem_Repeat 519700 519955 440 + . . scaffold191 TRF Tandem_Repeat 547760 547795 72 + . . scaffold191 TRF Tandem_Repeat 550044 550176 124 + . . scaffold191 GLEAN mRNA 551109 580903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_MuDR 551142 551546 93 - . . scaffold191 WUBlastX DNA_MuDR 551181 551624 89 - . . scaffold191 WUBlastX DNA_MuDR 551857 552282 68 - . . scaffold191 WUBlastX DNA_MuDR 552049 552270 97 - . . scaffold191 WUBlastX LINE_CR1 553023 553178 40 - . . scaffold191 WUBlastX LINE_CR1 553026 553154 62 - . . scaffold191 WUBlastX LINE_RTE-X 553967 554314 56 - . . scaffold191 WUBlastX LINE_RTE-X 554075 554263 57 - . . scaffold191 WUBlastX LINE_RTE-X 554405 554479 20 - . . scaffold191 WUBlastX LINE_RTE-X 554505 555029 196 - . . scaffold191 WUBlastX LINE_RTE-X 554529 554972 232 - . . scaffold191 WUBlastX LINE_RTE-X 555050 555262 123 - . . scaffold191 WUBlastX LINE_Jockey 555062 555301 40 - . . scaffold191 TRF Tandem_Repeat 555619 555675 114 + . . scaffold191 WUBlastX LINE_RTE-X 555804 555926 21 - . . scaffold191 WUBlastX LINE_L1-Tx1 556121 556921 444 + . . scaffold191 WUBlastX LINE_L1-Tx1 556999 557226 47 + . . scaffold191 WUBlastX LINE_L1 557044 558720 308 + . . scaffold191 WUBlastX LINE_L1-Tx1 557581 558756 691 + . . scaffold191 WUBlastX LINE_L1-Tx1 558734 559573 174 + . . scaffold191 WUBlastX LINE_L1-Tx1 559555 559911 52 + . . scaffold191 TRF Tandem_Repeat 562074 562135 106 + . . scaffold191 TRF Tandem_Repeat 563976 564006 62 + . . scaffold191 WUBlastX DNA_P 574428 574643 31 - . . scaffold191 WUBlastX DNA_P 574473 574643 42 - . . scaffold191 WUBlastX DNA_IS4EU 575165 575329 118 - . . scaffold191 TRF Tandem_Repeat 577180 577266 174 + . . scaffold191 WUBlastX LINE_Penelope 578145 578312 67 - . . scaffold191 GLEAN promoter 580904 581903 0.666431 - . ID=CGI_10022426; scaffold191 WUBlastX DNA_IS4EU 582479 582766 90 - . . scaffold191 WUBlastX LINE_L1-Tx1 585300 585599 54 - . . scaffold191 TRF Tandem_Repeat 597318 597379 60 + . . scaffold191 TRF Tandem_Repeat 597325 597406 65 + . . scaffold191 TRF Tandem_Repeat 597326 597406 76 + . . scaffold191 TRF Tandem_Repeat 597360 597409 73 + . . scaffold191 TRF Tandem_Repeat 609699 609739 82 + . . scaffold191 TRF Tandem_Repeat 609856 609919 110 + . . scaffold191 WUBlastX LINE_Rex-Babar 612520 613239 45 + . . scaffold191 WUBlastX LINE_L2 612676 613278 229 + . . scaffold191 WUBlastX LINE_L2 612781 613278 322 + . . scaffold191 WUBlastX LINE_L2 613280 614131 547 + . . scaffold191 GLEAN promoter 649718 650717 0.999676 + . ID=CGI_10022427; scaffold191 GLEAN mRNA 650718 657230 0.999676 + . ID=CGI_10022427; scaffold191 TRF Tandem_Repeat 660816 660859 88 + . . scaffold191 TRF Tandem_Repeat 663635 663676 84 + . . scaffold191 TRF Tandem_Repeat 667171 667227 114 + . . scaffold191 GLEAN mRNA 667786 670161 0.539079 - . ID=CGI_10022428; scaffold191 TRF Tandem_Repeat 668916 669710 1029 + . . scaffold191 GLEAN promoter 670162 671161 0.539079 - . ID=CGI_10022428; scaffold191 WUBlastX LTR_Gypsy 673528 674079 45 - . . scaffold191 WUBlastX LTR_Gypsy 673615 674040 53 - . . scaffold191 TRF Tandem_Repeat 677373 677822 767 + . . scaffold191 TRF Tandem_Repeat 686398 686431 59 + . . scaffold191 WUBlastX LINE_L1-Tx1 686876 687364 48 + . . scaffold191 WUBlastX LINE_L1-Tx1 686969 687169 107 + . . scaffold191 WUBlastX LINE_L1-Tx1 686969 687244 79 + . . scaffold191 WUBlastX LINE_L1-Tx1 687293 687649 135 + . . scaffold191 TRF Tandem_Repeat 692979 693202 322 + . . scaffold191 WUBlastX LTR_Gypsy 695078 695212 27 - . . scaffold191 WUBlastX LTR_Gypsy 695090 695203 33 - . . scaffold191 WUBlastX LTR_Gypsy 695235 695357 130 - . . scaffold191 TRF Tandem_Repeat 697782 698511 1208 + . . scaffold191 WUBlastX LINE_L1-Tx1 698675 699889 162 - . . scaffold191 WUBlastX LINE_L1-Tx1 698735 699712 197 - . . scaffold191 WUBlastX LINE_L1-Tx1 699711 699977 54 - . . scaffold191 WUBlastX LINE_L1-Tx1 699717 699932 121 - . . scaffold191 GLEAN mRNA 700065 700391 0.998504 - . ID=CGI_10022429; scaffold191 GLEAN promoter 700392 701391 0.998504 - . ID=CGI_10022429; scaffold191 TRF Tandem_Repeat 702682 702732 50 + . . scaffold191 TRF Tandem_Repeat 702689 702732 54 + . . scaffold191 WUBlastX LINE_RTE-X 702777 703619 235 - . . scaffold191 WUBlastX LINE_L1-Tx1 720076 720342 142 - . . scaffold191 WUBlastX LINE_L1-Tx1 720085 720402 37 - . . scaffold191 WUBlastX LINE_CR1 721042 721758 177 - . . scaffold191 TRF Tandem_Repeat 729340 729382 68 + . . scaffold191 WUBlastX LINE_RTE-BovB 734568 735497 38 - . . scaffold191 WUBlastX LINE_RTE-BovB 734805 735506 546 - . . scaffold191 WUBlastX LINE_RTE-BovB 734832 735659 241 - . . scaffold191 WUBlastX LINE_RTE-BovB 735956 736126 64 - . . scaffold191 WUBlastX LINE_RTE-BovB 736019 736147 99 - . . scaffold191 TRF Tandem_Repeat 738481 738520 80 + . . scaffold191 TRF Tandem_Repeat 744802 744906 76 + . . scaffold191 WUBlastX DNA_hAT-Tip100 750347 751045 446 - . . scaffold192 WUBlastX LINE_CR1-L2 1706 1795 29 - . . scaffold192 WUBlastX LINE_CR1-L2 1827 2171 94 - . . scaffold192 WUBlastX LINE_L2 1842 2114 119 - . . scaffold192 TRF Tandem_Repeat 3284 3332 98 + . . scaffold192 WUBlastX LINE_L2 3334 5007 597 - . . scaffold192 TRF Tandem_Repeat 6123 6203 63 + . . scaffold192 TRF Tandem_Repeat 7889 7926 67 + . . scaffold192 WUBlastX LINE_L2 8215 8505 71 - . . scaffold192 WUBlastX LTR_Gypsy-Cigr 14985 15560 188 - . . scaffold192 TRF Tandem_Repeat 16732 16790 100 + . . scaffold192 WUBlastX DNA_Sola 18805 19200 78 - . . scaffold192 WUBlastX LTR_Ngaro 19848 20081 88 - . . scaffold192 WUBlastX DNA_Sola 23340 24386 348 - . . scaffold192 GLEAN mRNA 23550 26296 0.999536 - . ID=CGI_10023697; scaffold192 WUBlastX DNA_Sola 24537 24746 73 - . . scaffold192 WUBlastX DNA_Sola 24567 24782 52 - . . scaffold192 WUBlastX DNA_Sola 24964 25251 197 - . . scaffold192 WUBlastX DNA_Sola 24964 25320 156 - . . scaffold192 WUBlastX DNA_Sola 25403 26527 486 - . . scaffold192 GLEAN promoter 26297 27296 0.999536 - . ID=CGI_10023697; scaffold192 TRF Tandem_Repeat 28116 28174 100 + . . scaffold192 WUBlastX DNA_Sola 30189 30584 78 - . . scaffold192 WUBlastX LTR_Ngaro 31232 31339 64 - . . scaffold192 WUBlastX LTR_Ngaro 31357 31467 27 - . . scaffold192 TRF Tandem_Repeat 40678 41413 892 + . . scaffold192 WUBlastX LINE_L1-Tx1 43667 44671 94 - . . scaffold192 WUBlastX LINE_L1 44543 44695 23 - . . scaffold192 GLEAN promoter 44762 45761 0.99996 + . ID=CGI_10023698; scaffold192 GLEAN mRNA 45762 51385 0.99996 + . ID=CGI_10023698; scaffold192 TRF Tandem_Repeat 50454 50600 73 + . . scaffold192 TRF Tandem_Repeat 50521 50664 96 + . . scaffold192 TRF Tandem_Repeat 54378 54425 89 + . . scaffold192 GLEAN mRNA 58345 67005 0.520488 - . ID=CGI_10023699; scaffold192 GLEAN promoter 67006 68005 0.520488 - . ID=CGI_10023699; scaffold192 TRF Tandem_Repeat 68423 68489 55 + . . scaffold192 TRF Tandem_Repeat 74271 74337 89 + . . scaffold192 GLEAN mRNA 87613 117852 0.813912 - . ID=CGI_10023700; scaffold192 GLEAN promoter 93399 94398 0.618241 + . ID=CGI_10023701; scaffold192 GLEAN mRNA 94399 94707 0.618241 + . ID=CGI_10023701; scaffold192 TRF Tandem_Repeat 102867 103057 239 + . . scaffold192 GLEAN promoter 117853 118852 0.813912 - . ID=CGI_10023700; scaffold192 TRF Tandem_Repeat 121246 121333 60 + . . scaffold192 TRF Tandem_Repeat 121398 121581 66 + . . scaffold192 TRF Tandem_Repeat 122043 122211 108 + . . scaffold192 GLEAN promoter 136158 137157 0.999676 + . ID=CGI_10023702; scaffold192 GLEAN mRNA 137158 138867 0.999676 + . ID=CGI_10023702; scaffold192 GLEAN promoter 142472 143471 0.544852 + . ID=CGI_10023703; scaffold192 GLEAN mRNA 143472 148658 0.544852 + . ID=CGI_10023703; scaffold192 GLEAN promoter 147920 148919 1 + . ID=CGI_10023704; scaffold192 GLEAN mRNA 148920 184529 1 + . ID=CGI_10023704; scaffold192 TRF Tandem_Repeat 154204 154241 76 + . . scaffold192 TRF Tandem_Repeat 166707 166750 70 + . . scaffold192 TRF Tandem_Repeat 172436 172460 50 + . . scaffold192 GLEAN mRNA 187564 194413 0.999702 - . ID=CGI_10023705; scaffold192 TRF Tandem_Repeat 190899 190948 100 + . . scaffold192 GLEAN promoter 194414 195413 0.999702 - . ID=CGI_10023705; scaffold192 GLEAN mRNA 194435 211602 0.999702 - . ID=CGI_10023706; scaffold192 TRF Tandem_Repeat 209436 209494 118 + . . scaffold192 GLEAN promoter 211603 212602 0.999702 - . ID=CGI_10023706; scaffold192 TRF Tandem_Repeat 214563 214931 524 + . . scaffold192 GLEAN mRNA 215380 223149 0.990769 - . ID=CGI_10023707; scaffold192 GLEAN promoter 223150 224149 0.990769 - . ID=CGI_10023707; scaffold192 GLEAN mRNA 225116 234415 0.830888 - . ID=CGI_10023708; scaffold192 GLEAN promoter 234416 235415 0.830888 - . ID=CGI_10023708; scaffold192 WUBlastX LTR_Ngaro 246483 246752 120 + . . scaffold192 WUBlastX LTR_Ngaro 246516 246743 139 + . . scaffold192 WUBlastX LINE_RTE-X 246951 247355 41 + . . scaffold192 TRF Tandem_Repeat 247713 247796 105 + . . scaffold192 GLEAN promoter 252182 253181 1 + . ID=CGI_10023709; scaffold192 GLEAN mRNA 253182 255032 1 + . ID=CGI_10023709; scaffold192 GLEAN promoter 262484 263483 0.999225 + . ID=CGI_10023710; scaffold192 GLEAN mRNA 263484 276722 0.999225 + . ID=CGI_10023710; scaffold192 TRF Tandem_Repeat 292522 292575 108 + . . scaffold192 GLEAN mRNA 293790 296803 1 - . ID=CGI_10023711; scaffold192 GLEAN promoter 296804 297803 1 - . ID=CGI_10023711; scaffold192 TRF Tandem_Repeat 302002 302028 54 + . . scaffold192 TRF Tandem_Repeat 303503 303589 106 + . . scaffold192 TRF Tandem_Repeat 303668 303846 166 + . . scaffold192 TRF Tandem_Repeat 303715 303806 121 + . . scaffold192 TRF Tandem_Repeat 303873 304109 172 + . . scaffold192 TRF Tandem_Repeat 313444 313523 160 + . . scaffold192 GLEAN mRNA 319614 322660 0.999997 - . ID=CGI_10023712; scaffold192 GLEAN promoter 322013 323012 0.999676 + . ID=CGI_10023713; scaffold192 GLEAN promoter 322661 323660 0.999997 - . ID=CGI_10023712; scaffold192 GLEAN mRNA 323013 334975 0.999676 + . ID=CGI_10023713; scaffold192 TRF Tandem_Repeat 325568 325630 96 + . . scaffold192 TRF Tandem_Repeat 348732 348804 146 + . . scaffold192 TRF Tandem_Repeat 352652 352726 141 + . . scaffold192 GLEAN promoter 352782 353781 0.694358 + . ID=CGI_10023714; scaffold192 GLEAN mRNA 353782 355692 0.694358 + . ID=CGI_10023714; scaffold192 GLEAN promoter 358585 359584 0.994008 + . ID=CGI_10023715; scaffold192 GLEAN mRNA 359585 360888 0.994008 + . ID=CGI_10023715; scaffold192 WUBlastX LINE_RTE-X 366674 367102 122 + . . scaffold192 WUBlastX LINE_RTE-X 367102 367524 53 + . . scaffold192 WUBlastX LINE_RTE-X 367533 367634 34 + . . scaffold192 GLEAN mRNA 374843 418305 0.813856 - . ID=CGI_10023716; scaffold192 TRF Tandem_Repeat 381610 381665 112 + . . scaffold192 TRF Tandem_Repeat 384577 384620 88 + . . scaffold192 GLEAN promoter 418306 419305 0.813856 - . ID=CGI_10023716; scaffold192 TRF Tandem_Repeat 423373 423565 158 + . . scaffold192 GLEAN mRNA 425049 457159 0.998504 - . ID=CGI_10023717; scaffold192 TRF Tandem_Repeat 425625 425732 51 + . . scaffold192 TRF Tandem_Repeat 429702 429751 57 + . . scaffold192 TRF Tandem_Repeat 445838 445891 108 + . . scaffold192 TRF Tandem_Repeat 447073 447122 100 + . . scaffold192 GLEAN promoter 457160 458159 0.998504 - . ID=CGI_10023717; scaffold192 TRF Tandem_Repeat 457454 457495 50 + . . scaffold192 TRF Tandem_Repeat 461549 461598 66 + . . scaffold192 GLEAN mRNA 461767 473338 0.91719 - . ID=CGI_10023718; scaffold192 TRF Tandem_Repeat 465477 465630 272 + . . scaffold192 GLEAN promoter 473339 474338 0.91719 - . ID=CGI_10023718; scaffold192 TRF Tandem_Repeat 475883 475924 84 + . . scaffold192 TRF Tandem_Repeat 477115 477168 108 + . . scaffold192 TRF Tandem_Repeat 480519 480584 114 + . . scaffold192 TRF Tandem_Repeat 483518 483563 92 + . . scaffold192 TRF Tandem_Repeat 489437 489492 103 + . . scaffold192 TRF Tandem_Repeat 491414 491463 100 + . . scaffold192 TRF Tandem_Repeat 492487 492610 139 + . . scaffold192 TRF Tandem_Repeat 492488 492610 125 + . . scaffold192 TRF Tandem_Repeat 497782 497865 51 + . . scaffold192 TRF Tandem_Repeat 497792 497863 74 + . . scaffold192 TRF Tandem_Repeat 498514 498563 100 + . . scaffold192 TRF Tandem_Repeat 501638 501708 142 + . . scaffold192 TRF Tandem_Repeat 503637 503709 139 + . . scaffold192 GLEAN mRNA 505174 515643 1 - . ID=CGI_10023719; scaffold192 TRF Tandem_Repeat 505855 506101 395 + . . scaffold192 TRF Tandem_Repeat 507304 508669 2669 + . . scaffold192 GLEAN promoter 515644 516643 1 - . ID=CGI_10023719; scaffold192 GLEAN promoter 519057 520056 0.809416 + . ID=CGI_10023720; scaffold192 GLEAN mRNA 520057 525085 0.809416 + . ID=CGI_10023720; scaffold192 TRF Tandem_Repeat 522561 522933 448 + . . scaffold192 TRF Tandem_Repeat 526616 527052 450 + . . scaffold192 TRF Tandem_Repeat 526616 528070 1453 + . . scaffold192 TRF Tandem_Repeat 526616 528077 1521 + . . scaffold192 TRF Tandem_Repeat 526665 526744 55 + . . scaffold192 TRF Tandem_Repeat 527032 527118 57 + . . scaffold192 TRF Tandem_Repeat 527044 527856 939 + . . scaffold192 TRF Tandem_Repeat 527784 528051 103 + . . scaffold192 TRF Tandem_Repeat 527851 528082 220 + . . scaffold192 TRF Tandem_Repeat 530216 530268 106 + . . scaffold192 GLEAN promoter 530371 531370 0.543544 + . ID=CGI_10023721; scaffold192 GLEAN mRNA 531371 556893 0.543544 + . ID=CGI_10023721; scaffold192 TRF Tandem_Repeat 534990 535037 96 + . . scaffold192 TRF Tandem_Repeat 535341 535396 112 + . . scaffold192 TRF Tandem_Repeat 536150 536177 56 + . . scaffold192 WUBlastX LTR_Pao 553442 553606 81 - . . scaffold192 WUBlastX LTR_Pao 553608 553700 41 - . . scaffold192 TRF Tandem_Repeat 554366 554419 99 + . . scaffold192 WUBlastX LINE_RTE-X 560767 561318 337 + . . scaffold192 WUBlastX LINE_RTE-X 561315 561698 98 + . . scaffold192 WUBlastX LINE_RTE-X 561357 561572 159 + . . scaffold192 TRF Tandem_Repeat 563414 563631 52 + . . scaffold192 TRF Tandem_Repeat 564798 564854 114 + . . scaffold192 TRF Tandem_Repeat 566439 566527 72 + . . scaffold192 TRF Tandem_Repeat 566523 566613 82 + . . scaffold192 TRF Tandem_Repeat 566986 567270 378 + . . scaffold192 TRF Tandem_Repeat 593295 593326 64 + . . scaffold192 TRF Tandem_Repeat 598476 598528 106 + . . scaffold192 TRF Tandem_Repeat 602351 602395 74 + . . scaffold192 TRF Tandem_Repeat 613323 613354 64 + . . scaffold192 GLEAN mRNA 616522 622842 0.999922 - . ID=CGI_10023722; scaffold192 TRF Tandem_Repeat 617465 617627 202 + . . scaffold192 TRF Tandem_Repeat 621122 621228 87 + . . scaffold192 TRF Tandem_Repeat 621339 621657 259 + . . scaffold192 GLEAN promoter 622843 623842 0.999922 - . ID=CGI_10023722; scaffold192 TRF Tandem_Repeat 651911 651986 116 + . . scaffold192 TRF Tandem_Repeat 652633 653012 464 + . . scaffold192 GLEAN mRNA 655198 676504 0.999922 - . ID=CGI_10023723; scaffold192 TRF Tandem_Repeat 656099 656131 57 + . . scaffold192 TRF Tandem_Repeat 662987 663043 114 + . . scaffold192 WUBlastX LTR_Gypsy 663920 664060 33 + . . scaffold192 WUBlastX LTR_Gypsy 664087 664215 45 + . . scaffold192 WUBlastX LTR_Gypsy 664217 664345 29 + . . scaffold192 WUBlastX LTR_Gypsy 664238 664354 31 + . . scaffold192 WUBlastX LTR_Gypsy 664845 665129 60 + . . scaffold192 WUBlastX LTR_Gypsy 665028 665183 85 + . . scaffold192 WUBlastX LTR_Gypsy 665028 665255 72 + . . scaffold192 WUBlastX LTR_Gypsy 665028 665150 86 + . . scaffold192 WUBlastX LTR_Gypsy-Gmr1 665462 665560 50 + . . scaffold192 WUBlastX LTR_Gypsy 665462 665587 50 + . . scaffold192 TRF Tandem_Repeat 671479 671675 295 + . . scaffold192 WUBlastX DNA_TcMar-Tc1 673365 673523 33 + . . scaffold192 WUBlastX DNA_TcMar-Tc1 673526 674335 482 + . . scaffold192 TRF Tandem_Repeat 675916 675965 68 + . . scaffold192 TRF Tandem_Repeat 675992 676027 65 + . . scaffold192 GLEAN promoter 676505 677504 0.999922 - . ID=CGI_10023723; scaffold192 TRF Tandem_Repeat 679720 679774 65 + . . scaffold192 WUBlastX LINE_L2 686494 687360 114 - . . scaffold192 WUBlastX LINE_CR1-L2 686500 687006 216 - . . scaffold192 WUBlastX LINE_L2 686530 687123 135 - . . scaffold192 TRF Tandem_Repeat 698344 698432 160 + . . scaffold192 WUBlastX LINE_L2 703531 704316 302 - . . scaffold192 WUBlastX LINE_L2 704319 704648 186 - . . scaffold192 WUBlastX LINE_L2 704666 706471 1026 - . . scaffold192 WUBlastX LINE_CR1-L2 706830 707306 96 - . . scaffold192 WUBlastX LINE_L2 706830 707141 156 - . . scaffold192 WUBlastX LINE_L2 708334 708765 51 + . . scaffold192 WUBlastX LINE_CR1-L2 708364 708639 59 + . . scaffold192 WUBlastX LTR_Gypsy 713535 713624 26 + . . scaffold192 WUBlastX LTR_Gypsy 713797 713829 21 + . . scaffold192 WUBlastX LTR_Gypsy 714221 714436 129 + . . scaffold192 WUBlastX LTR_Gypsy 714263 715123 504 + . . scaffold192 WUBlastX LTR_Gypsy 714263 714976 672 + . . scaffold192 WUBlastX LTR_Gypsy 714335 715531 368 + . . scaffold192 WUBlastX LTR_Gypsy 715399 715851 279 + . . scaffold192 WUBlastX LTR_Gypsy 715408 716163 255 + . . scaffold192 GLEAN mRNA 718516 719489 1 - . ID=CGI_10023724; scaffold192 GLEAN promoter 719490 720489 1 - . ID=CGI_10023724; scaffold192 GLEAN promoter 720349 721348 0.997109 + . ID=CGI_10023725; scaffold192 GLEAN mRNA 721349 727805 0.997109 + . ID=CGI_10023725; scaffold192 TRF Tandem_Repeat 724647 724678 55 + . . scaffold192 TRF Tandem_Repeat 724795 725537 1019 + . . scaffold192 TRF Tandem_Repeat 726467 726680 83 + . . scaffold192 GLEAN mRNA 730643 736781 1 - . ID=CGI_10023726; scaffold192 GLEAN promoter 736782 737781 1 - . ID=CGI_10023726; scaffold192 GLEAN mRNA 736964 765448 0.996806 - . ID=CGI_10023727; scaffold192 GLEAN promoter 737259 738258 0.821579 + . ID=CGI_10023728; scaffold192 GLEAN mRNA 738259 750993 0.821579 + . ID=CGI_10023728; scaffold192 TRF Tandem_Repeat 754143 757044 1849 + . . scaffold192 TRF Tandem_Repeat 754143 756954 679 + . . scaffold192 TRF Tandem_Repeat 754146 756954 588 + . . scaffold192 TRF Tandem_Repeat 754154 757044 1273 + . . scaffold192 TRF Tandem_Repeat 754297 754661 247 + . . scaffold192 TRF Tandem_Repeat 754602 755001 464 + . . scaffold192 TRF Tandem_Repeat 754654 754940 470 + . . scaffold192 TRF Tandem_Repeat 755465 756952 476 + . . scaffold192 GLEAN promoter 765449 766448 0.996806 - . ID=CGI_10023727; scaffold192 TRF Tandem_Repeat 766826 766906 162 + . . scaffold192 GLEAN mRNA 769615 776880 0.990769 - . ID=CGI_10023729; scaffold192 TRF Tandem_Repeat 776391 776433 77 + . . scaffold192 TRF Tandem_Repeat 776530 776579 91 + . . scaffold192 GLEAN promoter 776881 777880 0.990769 - . ID=CGI_10023729; scaffold192 GLEAN promoter 783028 784027 1 + . ID=CGI_10023730; scaffold192 GLEAN mRNA 784028 784627 1 + . ID=CGI_10023730; scaffold192 GLEAN mRNA 785261 785641 0.999064 - . ID=CGI_10023731; scaffold192 GLEAN promoter 785642 786641 0.999064 - . ID=CGI_10023731; scaffold192 GLEAN promoter 788151 789150 1 + . ID=CGI_10023733; scaffold192 GLEAN mRNA 788313 788798 0.999984 - . ID=CGI_10023732; scaffold192 GLEAN promoter 788799 789798 0.999984 - . ID=CGI_10023732; scaffold192 GLEAN mRNA 789151 789684 1 + . ID=CGI_10023733; scaffold192 TRF Tandem_Repeat 791557 791592 72 + . . scaffold192 TRF Tandem_Repeat 799673 799704 55 + . . scaffold192 TRF Tandem_Repeat 805929 806024 192 + . . scaffold192 TRF Tandem_Repeat 807448 807766 290 + . . scaffold192 GLEAN promoter 810053 811052 0.993032 + . ID=CGI_10023734; scaffold192 GLEAN mRNA 811053 814117 0.993032 + . ID=CGI_10023734; scaffold192 GLEAN mRNA 818387 823862 1 - . ID=CGI_10023735; scaffold192 GLEAN promoter 823863 824862 1 - . ID=CGI_10023735; scaffold192 GLEAN mRNA 824296 831465 0.989183 - . ID=CGI_10023736; scaffold192 GLEAN promoter 831466 832465 0.989183 - . ID=CGI_10023736; scaffold192 GLEAN promoter 838980 839979 1 + . ID=CGI_10023737; scaffold192 GLEAN mRNA 839980 847609 1 + . ID=CGI_10023737; scaffold193 GLEAN mRNA 270 12853 0.889922 - . ID=CGI_10015220; scaffold193 GLEAN promoter 12854 13853 0.889922 - . ID=CGI_10015220; scaffold193 GLEAN mRNA 14875 29688 0.648144 - . ID=CGI_10015221; scaffold193 TRF Tandem_Repeat 21895 21941 94 + . . scaffold193 TRF Tandem_Repeat 23047 23101 110 + . . scaffold193 GLEAN promoter 29689 30688 0.648144 - . ID=CGI_10015221; scaffold193 TRF Tandem_Repeat 50274 50365 175 + . . scaffold193 GLEAN promoter 58988 59987 0.99962 + . ID=CGI_10015222; scaffold193 GLEAN mRNA 59988 95620 0.99962 + . ID=CGI_10015222; scaffold193 TRF Tandem_Repeat 60433 60470 67 + . . scaffold193 TRF Tandem_Repeat 64546 64582 74 + . . scaffold193 WUBlastX LINE_RTE-X 65278 65727 62 - . . scaffold193 WUBlastX LINE_RTE-X 65311 65646 82 - . . scaffold193 GLEAN mRNA 74305 79214 0.997753 - . ID=CGI_10015223; scaffold193 GLEAN promoter 79215 80214 0.997753 - . ID=CGI_10015223; scaffold193 TRF Tandem_Repeat 79864 79902 53 + . . scaffold193 TRF Tandem_Repeat 84273 85319 972 + . . scaffold193 TRF Tandem_Repeat 85795 85821 54 + . . scaffold193 TRF Tandem_Repeat 87229 88133 1130 + . . scaffold193 TRF Tandem_Repeat 91778 92097 209 + . . scaffold193 WUBlastX DNA_P 97256 97471 20 + . . scaffold193 WUBlastX DNA_Kolobok-IS4 98041 99105 502 + . . scaffold193 TRF Tandem_Repeat 102611 102647 74 + . . scaffold193 GLEAN mRNA 102937 104430 0.999999 - . ID=CGI_10015224; scaffold193 GLEAN promoter 104431 105430 0.999999 - . ID=CGI_10015224; scaffold193 TRF Tandem_Repeat 109108 109142 70 + . . scaffold193 GLEAN promoter 110772 111771 1 + . ID=CGI_10015225; scaffold193 TRF Tandem_Repeat 110910 110955 92 + . . scaffold193 GLEAN mRNA 111772 117504 1 + . ID=CGI_10015225; scaffold193 TRF Tandem_Repeat 115821 116189 580 + . . scaffold193 TRF Tandem_Repeat 118309 119184 1513 + . . scaffold193 TRF Tandem_Repeat 124749 125613 1186 + . . scaffold193 GLEAN mRNA 129851 153952 0.99931 - . ID=CGI_10015226; scaffold193 TRF Tandem_Repeat 141832 141913 164 + . . scaffold193 GLEAN promoter 153953 154952 0.99931 - . ID=CGI_10015226; scaffold193 GLEAN mRNA 159903 161923 0.997816 - . ID=CGI_10015227; scaffold193 GLEAN promoter 161924 162923 0.997816 - . ID=CGI_10015227; scaffold193 TRF Tandem_Repeat 163421 163485 130 + . . scaffold193 WUBlastX LINE_R2-Hero 171203 171397 31 - . . scaffold193 WUBlastX LINE_R2-Hero 171394 171465 33 - . . scaffold193 WUBlastX LINE_R2-Hero 171474 171530 28 - . . scaffold193 WUBlastX LINE_R2-Hero 171803 172198 153 - . . scaffold193 TRF Tandem_Repeat 175232 175919 876 + . . scaffold193 GLEAN mRNA 181570 199075 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 190648 191396 997 + . . scaffold193 TRF Tandem_Repeat 192651 193085 387 + . . scaffold193 TRF Tandem_Repeat 194024 194065 77 + . . scaffold193 TRF Tandem_Repeat 195290 195375 120 + . . scaffold193 TRF Tandem_Repeat 197066 197161 151 + . . scaffold193 TRF Tandem_Repeat 197738 198652 616 + . . scaffold193 TRF Tandem_Repeat 197738 198640 1026 + . . scaffold193 TRF Tandem_Repeat 197738 198597 1032 + . . scaffold193 GLEAN promoter 199076 200075 0.757976 - . ID=CGI_10015228; scaffold193 TRF Tandem_Repeat 200020 200080 106 + . . scaffold193 TRF Tandem_Repeat 201225 201273 98 + . . scaffold193 TRF Tandem_Repeat 202019 202078 120 + . . scaffold193 GLEAN mRNA 205256 214331 1 - . ID=CGI_10015229; scaffold193 TRF Tandem_Repeat 210609 210666 98 + . . scaffold193 GLEAN promoter 213543 214542 1 + . ID=CGI_10015230; scaffold193 GLEAN promoter 214332 215331 1 - . ID=CGI_10015229; scaffold193 GLEAN mRNA 214543 219204 1 + . ID=CGI_10015230; scaffold193 GLEAN promoter 224142 225141 0.959713 + . ID=CGI_10015231; scaffold193 GLEAN mRNA 225142 231463 0.959713 + . ID=CGI_10015231; scaffold193 WUBlastX LINE_L1-Tx1 228032 228142 38 + . . scaffold193 WUBlastX LINE_L1-Tx1 228148 228513 89 + . . scaffold193 GLEAN mRNA 245779 268914 0.906792 - . ID=CGI_10015232; scaffold193 WUBlastX LTR_Gypsy-Cigr 248508 248777 75 - . . scaffold193 WUBlastX LTR_Gypsy-Cigr 248779 248913 106 - . . scaffold193 TRF Tandem_Repeat 255941 256208 446 + . . scaffold193 TRF Tandem_Repeat 256720 256946 267 + . . scaffold193 TRF Tandem_Repeat 256720 257225 638 + . . scaffold193 TRF Tandem_Repeat 256720 257225 638 + . . scaffold193 TRF Tandem_Repeat 256945 257225 445 + . . scaffold193 TRF Tandem_Repeat 264633 264674 84 + . . scaffold193 GLEAN promoter 266707 267706 0.999325 + . ID=CGI_10015233; scaffold193 GLEAN mRNA 267707 270094 0.999325 + . ID=CGI_10015233; scaffold193 GLEAN promoter 268915 269914 0.906792 - . ID=CGI_10015232; scaffold193 TRF Tandem_Repeat 301778 301846 68 + . . scaffold193 GLEAN mRNA 303409 304902 0.991093 - . ID=CGI_10015234; scaffold193 GLEAN promoter 304903 305902 0.991093 - . ID=CGI_10015234; scaffold193 TRF Tandem_Repeat 307866 308015 291 + . . scaffold193 TRF Tandem_Repeat 311319 312440 1632 + . . scaffold193 TRF Tandem_Repeat 319766 320118 363 + . . scaffold193 TRF Tandem_Repeat 319770 319897 157 + . . scaffold193 TRF Tandem_Repeat 319998 320120 120 + . . scaffold193 TRF Tandem_Repeat 321321 321372 104 + . . scaffold193 TRF Tandem_Repeat 322720 322801 146 + . . scaffold193 GLEAN promoter 324602 325601 1 + . ID=CGI_10015236; scaffold193 GLEAN mRNA 325210 325401 0.999372 - . ID=CGI_10015235; scaffold193 GLEAN promoter 325402 326401 0.999372 - . ID=CGI_10015235; scaffold193 GLEAN mRNA 325602 328204 1 + . ID=CGI_10015236; scaffold193 TRF Tandem_Repeat 326690 326886 295 + . . scaffold193 GLEAN mRNA 330087 335461 0.999676 - . ID=CGI_10015237; scaffold193 GLEAN promoter 333919 334918 1 + . ID=CGI_10015238; scaffold193 GLEAN mRNA 334919 336859 1 + . ID=CGI_10015238; scaffold193 GLEAN promoter 335462 336461 0.999676 - . ID=CGI_10015237; scaffold193 TRF Tandem_Repeat 335699 335769 142 + . . scaffold193 TRF Tandem_Repeat 338399 338432 50 + . . scaffold193 GLEAN promoter 347501 348500 0.382301 + . ID=CGI_10015239; scaffold193 GLEAN mRNA 348501 369782 0.382301 + . ID=CGI_10015239; scaffold193 TRF Tandem_Repeat 348735 348786 65 + . . scaffold193 TRF Tandem_Repeat 349145 349185 82 + . . scaffold193 TRF Tandem_Repeat 352500 353164 1136 + . . scaffold193 TRF Tandem_Repeat 355560 355995 452 + . . scaffold193 TRF Tandem_Repeat 355760 355995 402 + . . scaffold193 TRF Tandem_Repeat 357116 357385 416 + . . scaffold193 TRF Tandem_Repeat 357515 357740 394 + . . scaffold193 TRF Tandem_Repeat 366481 366786 241 + . . scaffold193 TRF Tandem_Repeat 369156 369332 313 + . . scaffold193 GLEAN mRNA 370417 371757 0.474303 - . ID=CGI_10015240; scaffold193 TRF Tandem_Repeat 370958 371169 246 + . . scaffold193 GLEAN promoter 371758 372757 0.474303 - . ID=CGI_10015240; scaffold193 TRF Tandem_Repeat 373331 373362 64 + . . scaffold193 WUBlastX LINE_CR1 374647 375906 747 - . . scaffold193 GLEAN promoter 375294 376293 0.47581 + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 375947 376000 108 + . . scaffold193 GLEAN mRNA 376294 392945 0.47581 + . ID=CGI_10015241; scaffold193 TRF Tandem_Repeat 387802 387872 70 + . . scaffold193 TRF Tandem_Repeat 387802 387861 66 + . . scaffold193 TRF Tandem_Repeat 387807 387869 108 + . . scaffold193 TRF Tandem_Repeat 387811 387872 70 + . . scaffold193 TRF Tandem_Repeat 387896 388689 1161 + . . scaffold193 TRF Tandem_Repeat 388771 389000 426 + . . scaffold193 GLEAN promoter 392436 393435 0.997877 + . ID=CGI_10015242; scaffold193 GLEAN mRNA 393436 394374 0.997877 + . ID=CGI_10015242; scaffold193 TRF Tandem_Repeat 395759 396333 502 + . . scaffold193 TRF Tandem_Repeat 395761 396333 452 + . . scaffold193 TRF Tandem_Repeat 395832 396465 289 + . . scaffold193 GLEAN promoter 396192 397191 0.998922 + . ID=CGI_10015243; scaffold193 GLEAN mRNA 397192 403573 0.998922 + . ID=CGI_10015243; scaffold193 TRF Tandem_Repeat 398842 399144 366 + . . scaffold193 TRF Tandem_Repeat 402099 402352 447 + . . scaffold193 GLEAN promoter 405722 406721 0.721776 + . ID=CGI_10015245; scaffold193 GLEAN mRNA 406572 408231 0.682499 - . ID=CGI_10015244; scaffold193 GLEAN mRNA 406722 407319 0.721776 + . ID=CGI_10015245; scaffold193 GLEAN promoter 408232 409231 0.682499 - . ID=CGI_10015244; scaffold193 GLEAN mRNA 408497 408895 0.999479 - . ID=CGI_10015246; scaffold193 GLEAN promoter 408896 409895 0.999479 - . ID=CGI_10015246; scaffold193 TRF Tandem_Repeat 409761 409824 128 + . . scaffold193 TRF Tandem_Repeat 410231 410779 573 + . . scaffold193 GLEAN promoter 410944 411943 1 + . ID=CGI_10015247; scaffold193 GLEAN mRNA 411944 415558 1 + . ID=CGI_10015247; scaffold193 GLEAN mRNA 416048 422414 0.990769 - . ID=CGI_10015248; scaffold193 WUBlastX LINE_L2 418005 418157 69 - . . scaffold193 TRF Tandem_Repeat 418190 418214 50 + . . scaffold193 TRF Tandem_Repeat 418213 418243 62 + . . scaffold193 TRF Tandem_Repeat 418388 418893 967 + . . scaffold193 GLEAN promoter 422415 423414 0.990769 - . ID=CGI_10015248; scaffold193 TRF Tandem_Repeat 423278 423446 74 + . . scaffold193 TRF Tandem_Repeat 423419 423492 71 + . . scaffold194 GLEAN mRNA 245 7519 1 - . ID=CGI_10011054; scaffold194 GLEAN promoter 7520 8519 1 - . ID=CGI_10011054; scaffold194 GLEAN promoter 20137 21136 0.879068 + . ID=CGI_10011055; scaffold194 GLEAN mRNA 21137 37976 0.879068 + . ID=CGI_10011055; scaffold194 GLEAN mRNA 33186 38585 0.996804 - . ID=CGI_10011056; scaffold194 GLEAN promoter 38586 39585 0.996804 - . ID=CGI_10011056; scaffold194 TRF Tandem_Repeat 40196 40238 86 + . . scaffold194 TRF Tandem_Repeat 40897 41023 191 + . . scaffold194 GLEAN promoter 41060 42059 0.859422 + . ID=CGI_10011057; scaffold194 GLEAN mRNA 42060 59595 0.859422 + . ID=CGI_10011057; scaffold194 GLEAN mRNA 61043 62030 1 - . ID=CGI_10011058; scaffold194 GLEAN promoter 62031 63030 1 - . ID=CGI_10011058; scaffold194 TRF Tandem_Repeat 74411 74450 80 + . . scaffold194 WUBlastX LINE_L1 78701 78748 20 + . . scaffold194 WUBlastX LINE_L1 78721 79947 43 + . . scaffold194 WUBlastX LINE_L1-Tx1 78976 80286 297 + . . scaffold194 WUBlastX LINE_L1 80791 80841 22 + . . scaffold194 GLEAN promoter 87923 88922 0.864939 + . ID=CGI_10011059; scaffold194 GLEAN mRNA 88923 103343 0.864939 + . ID=CGI_10011059; scaffold194 TRF Tandem_Repeat 89628 89708 162 + . . scaffold194 WUBlastX LINE_Penelope 92658 93170 45 + . . scaffold194 WUBlastX LINE_Penelope 92766 93152 66 + . . scaffold194 WUBlastX LTR_Gypsy 94729 95004 87 + . . scaffold194 WUBlastX LTR_Gypsy 95896 96330 244 + . . scaffold194 WUBlastX LTR_Gypsy 96338 98047 1420 + . . scaffold194 GLEAN mRNA 108131 123794 0.616811 - . ID=CGI_10011060; scaffold194 TRF Tandem_Repeat 113308 113333 52 + . . scaffold194 TRF Tandem_Repeat 117100 117346 467 + . . scaffold194 TRF Tandem_Repeat 120970 121358 147 + . . scaffold194 TRF Tandem_Repeat 121019 121385 521 + . . scaffold194 TRF Tandem_Repeat 121066 121401 246 + . . scaffold194 GLEAN promoter 123795 124794 0.616811 - . ID=CGI_10011060; scaffold194 GLEAN mRNA 125606 128405 0.654708 - . ID=CGI_10011061; scaffold194 GLEAN promoter 127908 128907 1 + . ID=CGI_10011062; scaffold194 GLEAN promoter 128406 129405 0.654708 - . ID=CGI_10011061; scaffold194 GLEAN mRNA 128908 130578 1 + . ID=CGI_10011062; scaffold194 GLEAN mRNA 131449 133125 0.992892 - . ID=CGI_10011063; scaffold194 TRF Tandem_Repeat 131780 132417 755 + . . scaffold194 GLEAN promoter 133126 134125 0.992892 - . ID=CGI_10011063; scaffold194 WUBlastX LINE_R2-Hero 136920 137003 55 + . . scaffold194 WUBlastX LINE_R2-Hero 136997 137221 52 + . . scaffold194 WUBlastX LINE_R2-Hero 137228 137554 75 + . . scaffold194 WUBlastX LINE_R2-Hero 137350 137688 59 + . . scaffold194 WUBlastX LINE_L1 140569 140868 22 - . . scaffold194 GLEAN mRNA 144296 186321 0.434209 - . ID=CGI_10011064; scaffold194 TRF Tandem_Repeat 152197 153439 1382 + . . scaffold194 TRF Tandem_Repeat 156338 156527 233 + . . scaffold194 TRF Tandem_Repeat 158129 158297 223 + . . scaffold194 TRF Tandem_Repeat 164000 164593 663 + . . scaffold194 TRF Tandem_Repeat 164122 164563 537 + . . scaffold194 GLEAN promoter 186322 187321 0.434209 - . ID=CGI_10011064; scaffold194 GLEAN promoter 191548 192547 0.999998 + . ID=CGI_10011065; scaffold194 GLEAN mRNA 192548 194065 0.999998 + . ID=CGI_10011065; scaffold194 WUBlastX LINE_RTE-X 195563 195724 51 + . . scaffold194 WUBlastX LINE_RTE-X 195617 195796 43 + . . scaffold194 WUBlastX LINE_RTE-X 195617 195883 23 + . . scaffold194 GLEAN mRNA 196686 201896 0.285842 - . ID=CGI_10011066; scaffold194 GLEAN promoter 201897 202896 0.285842 - . ID=CGI_10011066; scaffold194 TRF Tandem_Repeat 203244 203343 164 + . . scaffold194 TRF Tandem_Repeat 203244 203343 164 + . . scaffold194 TRF Tandem_Repeat 203244 203343 164 + . . scaffold194 GLEAN mRNA 205150 207069 0.728723 - . ID=CGI_10011067; scaffold194 WUBlastX DNA_Sola 205153 205533 35 - . . scaffold194 TRF Tandem_Repeat 206325 206373 98 + . . scaffold194 WUBlastX DNA_Sola 206500 207129 68 - . . scaffold194 GLEAN promoter 207070 208069 0.728723 - . ID=CGI_10011067; scaffold194 TRF Tandem_Repeat 207625 207661 74 + . . scaffold194 TRF Tandem_Repeat 211813 213652 2589 + . . scaffold194 TRF Tandem_Repeat 220003 222382 4232 + . . scaffold194 TRF Tandem_Repeat 233601 233711 105 + . . scaffold194 WUBlastX RC_Helitron 238692 239630 468 + . . scaffold194 WUBlastX RC_Helitron 240913 240987 33 + . . scaffold194 WUBlastX RC_Helitron 240990 241445 331 + . . scaffold194 TRF Tandem_Repeat 241488 241599 64 + . . scaffold194 TRF Tandem_Repeat 241742 241791 50 + . . scaffold194 TRF Tandem_Repeat 242270 242369 58 + . . scaffold194 WUBlastX RC_Helitron 242460 244085 284 + . . scaffold194 WUBlastX RC_Helitron 244624 244779 28 + . . scaffold194 WUBlastX RC_Helitron 244672 244812 37 + . . scaffold194 WUBlastX RC_Helitron 244829 244960 45 + . . scaffold194 TRF Tandem_Repeat 247941 247975 70 + . . scaffold194 TRF Tandem_Repeat 247973 248037 130 + . . scaffold194 GLEAN promoter 248396 249395 0.709931 + . ID=CGI_10011068; scaffold194 GLEAN mRNA 249396 274108 0.709931 + . ID=CGI_10011068; scaffold194 TRF Tandem_Repeat 253756 253805 100 + . . scaffold194 WUBlastX DNA_Harbinger 253985 254257 118 - . . scaffold194 WUBlastX DNA_Harbinger 254269 254337 65 - . . scaffold194 TRF Tandem_Repeat 255766 255813 78 + . . scaffold194 WUBlastX DNA_Crypton 260953 261225 48 - . . scaffold194 TRF Tandem_Repeat 270484 270531 96 + . . scaffold194 GLEAN mRNA 271235 277293 0.464633 - . ID=CGI_10011069; scaffold194 WUBlastX RC_Helitron 273120 273767 155 - . . scaffold194 GLEAN promoter 277294 278293 0.464633 - . ID=CGI_10011069; scaffold194 GLEAN mRNA 279249 281156 0.933423 - . ID=CGI_10011070; scaffold194 GLEAN promoter 281157 281365 0.933423 - . ID=CGI_10011070; scaffold19568 WUBlastX LINE_CR1-L2 3 257 105 + . . scaffold19568 WUBlastX LINE_RTE-X 3 482 94 + . . scaffold19568 WUBlastX LINE_RTE-BovB 523 813 53 + . . scaffold196 WUBlastX LINE_Penelope 293 757 39 - . . scaffold196 WUBlastX LINE_Penelope 392 1201 254 - . . scaffold196 WUBlastX LINE_Penelope 668 1318 32 - . . scaffold196 GLEAN promoter 8514 9513 0.676836 + . ID=CGI_10001478; scaffold196 GLEAN mRNA 9514 21594 0.676836 + . ID=CGI_10001478; scaffold196 TRF Tandem_Repeat 10417 11272 993 + . . scaffold196 TRF Tandem_Repeat 12270 12369 57 + . . scaffold198 GLEAN promoter 3098 4097 0.65089 + . ID=CGI_10027787; scaffold198 GLEAN mRNA 4098 23255 0.65089 + . ID=CGI_10027787; scaffold198 TRF Tandem_Repeat 15227 15290 128 + . . scaffold198 WUBlastX DNA_TcMar-Tc1 15573 16463 188 - . . scaffold198 TRF Tandem_Repeat 18116 18144 58 + . . scaffold198 WUBlastX LINE_L2 33929 34216 26 - . . scaffold198 WUBlastX LINE_L2 33944 34183 62 - . . scaffold198 TRF Tandem_Repeat 35470 35603 113 + . . scaffold198 TRF Tandem_Repeat 47636 47685 100 + . . scaffold198 GLEAN mRNA 50400 51314 0.518005 - . ID=CGI_10027788; scaffold198 TRF Tandem_Repeat 50786 50844 109 + . . scaffold198 GLEAN promoter 51315 52314 0.518005 - . ID=CGI_10027788; scaffold198 GLEAN mRNA 59221 59559 0.999699 - . ID=CGI_10027789; scaffold198 GLEAN promoter 59560 60559 0.999699 - . ID=CGI_10027789; scaffold198 GLEAN mRNA 59635 60417 0.642317 - . ID=CGI_10027790; scaffold198 GLEAN promoter 60418 61417 0.642317 - . ID=CGI_10027790; scaffold198 TRF Tandem_Repeat 62228 62276 55 + . . scaffold198 TRF Tandem_Repeat 62843 62876 50 + . . scaffold198 TRF Tandem_Repeat 62876 62927 97 + . . scaffold198 TRF Tandem_Repeat 69628 69691 107 + . . scaffold198 TRF Tandem_Repeat 70122 70224 158 + . . scaffold198 GLEAN promoter 74748 75747 0.999376 + . ID=CGI_10027791; scaffold198 GLEAN mRNA 75748 78088 0.999376 + . ID=CGI_10027791; scaffold198 TRF Tandem_Repeat 80437 80473 56 + . . scaffold198 GLEAN mRNA 82427 83260 0.64197 - . ID=CGI_10027792; scaffold198 GLEAN promoter 83261 84260 0.64197 - . ID=CGI_10027792; scaffold198 GLEAN mRNA 95608 115405 0.209172 - . ID=CGI_10027793; scaffold198 TRF Tandem_Repeat 101556 101639 50 + . . scaffold198 TRF Tandem_Repeat 101556 101639 50 + . . scaffold198 GLEAN promoter 106376 107375 0.555991 + . ID=CGI_10027794; scaffold198 GLEAN mRNA 107376 124098 0.555991 + . ID=CGI_10027794; scaffold198 TRF Tandem_Repeat 113463 113553 146 + . . scaffold198 TRF Tandem_Repeat 113463 113553 157 + . . scaffold198 GLEAN promoter 115406 116405 0.209172 - . ID=CGI_10027793; scaffold198 GLEAN promoter 124037 125036 0.958051 + . ID=CGI_10027795; scaffold198 GLEAN mRNA 125037 150103 0.958051 + . ID=CGI_10027795; scaffold198 TRF Tandem_Repeat 127420 127447 56 + . . scaffold198 TRF Tandem_Repeat 127535 127561 54 + . . scaffold198 GLEAN mRNA 129155 148314 0.927276 - . ID=CGI_10027796; scaffold198 WUBlastX DNA_Harbinger 129305 129514 41 - . . scaffold198 WUBlastX DNA_Harbinger 129368 129568 96 - . . scaffold198 WUBlastX DNA_Harbinger 129619 129813 76 - . . scaffold198 WUBlastX DNA_Harbinger 129709 129813 83 - . . scaffold198 WUBlastX DNA_Harbinger 129712 129846 33 - . . scaffold198 WUBlastX DNA_Harbinger 130032 130214 41 - . . scaffold198 WUBlastX DNA_Harbinger 130062 130259 72 - . . scaffold198 WUBlastX DNA_Harbinger 130077 130199 74 - . . scaffold198 WUBlastX DNA_TcMar-Tc1 131924 132136 143 - . . scaffold198 WUBlastX DNA_TcMar-Tc1 132106 132432 195 - . . scaffold198 WUBlastX DNA_TcMar-Tc1 132473 132856 172 - . . scaffold198 WUBlastX DNA_TcMar-Tc1 132509 132937 53 - . . scaffold198 TRF Tandem_Repeat 147501 147601 78 + . . scaffold198 GLEAN promoter 148315 149314 0.927276 - . ID=CGI_10027796; scaffold198 GLEAN promoter 149107 150106 0.689481 + . ID=CGI_10027797; scaffold198 GLEAN mRNA 150107 177586 0.689481 + . ID=CGI_10027797; scaffold198 TRF Tandem_Repeat 166221 167845 1943 + . . scaffold198 TRF Tandem_Repeat 166223 167845 2325 + . . scaffold198 TRF Tandem_Repeat 169117 169235 89 + . . scaffold198 TRF Tandem_Repeat 172332 172435 70 + . . scaffold198 GLEAN promoter 178778 179777 0.421369 + . ID=CGI_10027798; scaffold198 GLEAN mRNA 179778 189785 0.421369 + . ID=CGI_10027798; scaffold198 TRF Tandem_Repeat 180236 180261 52 + . . scaffold198 TRF Tandem_Repeat 180263 180357 68 + . . scaffold198 GLEAN promoter 241388 242387 0.6634 + . ID=CGI_10027799; scaffold198 GLEAN mRNA 242388 256229 0.6634 + . ID=CGI_10027799; scaffold198 TRF Tandem_Repeat 248384 248420 65 + . . scaffold198 TRF Tandem_Repeat 250628 250662 70 + . . scaffold198 GLEAN promoter 255268 256267 0.612819 + . ID=CGI_10027800; scaffold198 GLEAN mRNA 256268 257131 0.612819 + . ID=CGI_10027800; scaffold198 TRF Tandem_Repeat 263688 263771 100 + . . scaffold198 WUBlastX LINE_L1-Tx1 270371 271897 188 + . . scaffold198 WUBlastX LINE_Penelope 276189 276572 33 - . . scaffold198 WUBlastX LTR_DIRS 278811 279275 218 - . . scaffold198 WUBlastX LTR_DIRS 279113 281119 458 - . . scaffold198 WUBlastX LTR_DIRS 279698 281125 564 - . . scaffold198 WUBlastX LTR_DIRS 281127 281471 89 - . . scaffold198 WUBlastX LTR_DIRS 281127 281384 158 - . . scaffold198 TRF Tandem_Repeat 282940 283112 96 + . . scaffold198 TRF Tandem_Repeat 283211 283300 92 + . . scaffold198 WUBlastX LINE_L1-Tx1 283594 283770 44 + . . scaffold198 TRF Tandem_Repeat 298503 298578 102 + . . scaffold198 GLEAN promoter 302588 303587 0.996195 + . ID=CGI_10027801; scaffold198 GLEAN mRNA 303588 304730 0.996195 + . ID=CGI_10027801; scaffold198 GLEAN promoter 303779 304778 0.999995 + . ID=CGI_10027802; scaffold198 GLEAN mRNA 304779 306613 0.999995 + . ID=CGI_10027802; scaffold198 WUBlastX LINE_RTE-X 309152 309286 56 - . . scaffold198 GLEAN promoter 319228 320227 0.481548 + . ID=CGI_10027803; scaffold198 GLEAN mRNA 320228 321313 0.481548 + . ID=CGI_10027803; scaffold198 GLEAN mRNA 321402 323594 0.999536 - . ID=CGI_10027804; scaffold198 TRF Tandem_Repeat 322784 322828 60 + . . scaffold198 TRF Tandem_Repeat 322784 322830 60 + . . scaffold198 GLEAN promoter 323595 324594 0.999536 - . ID=CGI_10027804; scaffold198 TRF Tandem_Repeat 323892 323923 64 + . . scaffold198 TRF Tandem_Repeat 326684 326720 74 + . . scaffold198 GLEAN mRNA 328456 346127 1 - . ID=CGI_10027805; scaffold198 TRF Tandem_Repeat 329881 329998 148 + . . scaffold198 TRF Tandem_Repeat 333286 335281 2519 + . . scaffold198 GLEAN promoter 346128 347127 1 - . ID=CGI_10027805; scaffold198 WUBlastX LINE_RTE-X 364562 364975 59 - . . scaffold198 WUBlastX LINE_RTE-X 364568 364876 65 - . . scaffold198 WUBlastX RC_Helitron 375558 375833 72 + . . scaffold198 GLEAN mRNA 381028 385398 0.999561 - . ID=CGI_10027806; scaffold198 GLEAN promoter 385399 386398 0.999561 - . ID=CGI_10027806; scaffold198 TRF Tandem_Repeat 389659 389691 66 + . . scaffold198 TRF Tandem_Repeat 409146 409212 61 + . . scaffold198 TRF Tandem_Repeat 409148 409209 56 + . . scaffold198 TRF Tandem_Repeat 412304 412360 114 + . . scaffold198 GLEAN promoter 418796 419795 0.84054 + . ID=CGI_10027808; scaffold198 GLEAN mRNA 419796 449287 0.84054 + . ID=CGI_10027808; scaffold198 TRF Tandem_Repeat 420311 420343 66 + . . scaffold198 TRF Tandem_Repeat 422431 422471 82 + . . scaffold198 TRF Tandem_Repeat 422548 422617 140 + . . scaffold198 TRF Tandem_Repeat 422974 423033 66 + . . scaffold198 TRF Tandem_Repeat 423249 423334 147 + . . scaffold198 TRF Tandem_Repeat 424154 424254 94 + . . scaffold198 TRF Tandem_Repeat 424294 424403 170 + . . scaffold198 TRF Tandem_Repeat 426061 426312 377 + . . scaffold198 WUBlastX DNA_TcMar-Marin 426676 426807 20 + . . scaffold198 WUBlastX DNA_TcMar-Tc1 426700 427710 586 + . . scaffold198 TRF Tandem_Repeat 439448 439481 68 + . . scaffold198 TRF Tandem_Repeat 455129 455177 98 + . . scaffold198 WUBlastX LTR_Gypsy 456406 456549 88 - . . scaffold198 WUBlastX LTR_Gypsy 456412 456777 83 - . . scaffold198 TRF Tandem_Repeat 457659 457702 79 + . . scaffold198 GLEAN promoter 459460 460459 0.658714 + . ID=CGI_10027809; scaffold198 GLEAN mRNA 460460 466402 0.658714 + . ID=CGI_10027809; scaffold198 GLEAN mRNA 466865 474527 0.657508 - . ID=CGI_10027810; scaffold198 TRF Tandem_Repeat 469267 470723 2066 + . . scaffold198 TRF Tandem_Repeat 470747 470785 51 + . . scaffold198 GLEAN promoter 474528 475527 0.657508 - . ID=CGI_10027810; scaffold198 GLEAN promoter 474863 475862 1 + . ID=CGI_10027811; scaffold198 GLEAN mRNA 475863 484427 1 + . ID=CGI_10027811; scaffold198 TRF Tandem_Repeat 478382 478432 102 + . . scaffold198 TRF Tandem_Repeat 479035 479060 52 + . . scaffold198 TRF Tandem_Repeat 483594 483634 82 + . . scaffold198 GLEAN mRNA 484926 489308 0.749111 - . ID=CGI_10027812; scaffold198 GLEAN promoter 489309 490308 0.749111 - . ID=CGI_10027812; scaffold198 TRF Tandem_Repeat 492838 492899 124 + . . scaffold198 TRF Tandem_Repeat 493706 493789 168 + . . scaffold198 TRF Tandem_Repeat 494934 494985 104 + . . scaffold198 GLEAN mRNA 497110 499078 0.593383 - . ID=CGI_10027813; scaffold198 GLEAN promoter 499079 500078 0.593383 - . ID=CGI_10027813; scaffold198 TRF Tandem_Repeat 508628 508702 141 + . . scaffold198 GLEAN promoter 519862 520861 0.998256 + . ID=CGI_10027814; scaffold198 GLEAN mRNA 520862 523634 0.998256 + . ID=CGI_10027814; scaffold198 WUBlastX LINE_RTE-BovB 527772 527891 88 + . . scaffold198 WUBlastX LINE_RTE-BovB 527792 528205 361 + . . scaffold198 WUBlastX LINE_RTE-BovB 527909 528208 388 + . . scaffold198 TRF Tandem_Repeat 528281 528336 112 + . . scaffold198 GLEAN promoter 531542 532541 0.338011 + . ID=CGI_10027815; scaffold198 GLEAN mRNA 532542 554203 0.338011 + . ID=CGI_10027815; scaffold198 TRF Tandem_Repeat 535404 535429 52 + . . scaffold198 TRF Tandem_Repeat 537068 537109 66 + . . scaffold198 WUBlastX LTR_Gypsy 548534 549313 43 + . . scaffold198 WUBlastX LTR_Gypsy 548816 549589 169 + . . scaffold198 WUBlastX LTR_Gypsy 549026 550378 219 + . . scaffold198 WUBlastX LTR_Gypsy 549713 553234 1845 + . . scaffold198 WUBlastX LTR_Gypsy-Cigr 550415 553201 2093 + . . scaffold198 WUBlastX LTR_Gypsy 552572 553378 136 + . . scaffold198 WUBlastX LTR_Gypsy 553334 553402 33 + . . scaffold198 WUBlastX LINE_L1 554899 555447 20 - . . scaffold198 WUBlastX LINE_RTE-BovB 555094 555384 222 - . . scaffold198 WUBlastX LINE_RTE-BovB 555399 555836 151 - . . scaffold198 WUBlastX LINE_L1 555417 555950 48 - . . scaffold198 TRF Tandem_Repeat 558021 558049 58 + . . scaffold198 WUBlastX LTR_DIRS? 560775 561569 445 - . . scaffold198 WUBlastX LTR_DIRS 562112 562402 67 - . . scaffold198 WUBlastX LTR_DIRS 562401 564488 563 - . . scaffold198 TRF Tandem_Repeat 567461 567508 78 + . . scaffold198 GLEAN promoter 576080 577079 0.999076 + . ID=CGI_10027816; scaffold198 TRF Tandem_Repeat 576379 576440 115 + . . scaffold198 GLEAN mRNA 577080 583653 0.999076 + . ID=CGI_10027816; scaffold198 TRF Tandem_Repeat 584502 584529 56 + . . scaffold198 TRF Tandem_Repeat 586661 586883 261 + . . scaffold198 TRF Tandem_Repeat 587603 587883 339 + . . scaffold198 TRF Tandem_Repeat 587603 587885 358 + . . scaffold198 TRF Tandem_Repeat 587603 587883 458 + . . scaffold198 GLEAN promoter 598000 598999 0.777767 + . ID=CGI_10027817; scaffold198 GLEAN mRNA 599000 600064 0.777767 + . ID=CGI_10027817; scaffold198 WUBlastX LTR_Gypsy 604542 604967 26 + . . scaffold198 WUBlastX LTR_Gypsy 604632 604847 46 + . . scaffold198 WUBlastX LTR_Gypsy 605241 605396 53 + . . scaffold198 WUBlastX LTR_Gypsy 605321 605917 68 + . . scaffold198 WUBlastX LTR_Gypsy 605687 605917 141 + . . scaffold198 TRF Tandem_Repeat 608643 608667 50 + . . scaffold198 WUBlastX LINE_L1-Tx1 617214 617930 72 - . . scaffold198 WUBlastX LINE_L1-Tx1 620016 621206 252 - . . scaffold198 WUBlastX LINE_CR1 621659 621730 21 - . . scaffold198 TRF Tandem_Repeat 623479 623504 52 + . . scaffold198 TRF Tandem_Repeat 624918 624958 82 + . . scaffold198 TRF Tandem_Repeat 625423 625480 116 + . . scaffold198 TRF Tandem_Repeat 627912 627939 56 + . . scaffold198 TRF Tandem_Repeat 630171 630219 80 + . . scaffold198 TRF Tandem_Repeat 630205 630288 159 + . . scaffold198 WUBlastX DNA_Harbinger 630304 630504 78 + . . scaffold198 TRF Tandem_Repeat 635716 635811 63 + . . scaffold198 TRF Tandem_Repeat 635716 635741 52 + . . scaffold198 WUBlastX DNA_Harbinger 636073 636330 58 - . . scaffold198 WUBlastX DNA_Harbinger 636124 636330 61 - . . scaffold198 WUBlastX DNA_Harbinger 636464 636718 224 - . . scaffold198 WUBlastX DNA_Harbinger 636954 637373 62 - . . scaffold198 WUBlastX DNA_Harbinger 637053 637502 100 - . . scaffold198 WUBlastX DNA_Harbinger 637080 637391 156 - . . scaffold198 WUBlastX DNA_Harbinger 638025 638264 43 - . . scaffold198 TRF Tandem_Repeat 641737 641774 76 + . . scaffold198 WUBlastX DNA_MuDR 651480 652709 155 + . . scaffold198 GLEAN promoter 687942 688941 0.990187 + . ID=CGI_10027818; scaffold198 GLEAN mRNA 688942 707984 0.990187 + . ID=CGI_10027818; scaffold198 TRF Tandem_Repeat 689778 689810 66 + . . scaffold198 WUBlastX DNA_MuDR 714862 716214 341 - . . scaffold198 TRF Tandem_Repeat 716300 716449 257 + . . scaffold198 WUBlastX LINE_Penelope 719621 719788 37 + . . scaffold198 WUBlastX LINE_Penelope 719621 719722 55 + . . scaffold198 GLEAN mRNA 738095 738847 0.6496 - . ID=CGI_10027819; scaffold198 GLEAN promoter 738848 739847 0.6496 - . ID=CGI_10027819; scaffold198 TRF Tandem_Repeat 739850 739889 80 + . . scaffold198 WUBlastX LINE_RTE-X 750026 751222 465 + . . scaffold198 WUBlastX LINE_RTE-X 751261 751635 131 + . . scaffold198 GLEAN promoter 755240 756239 0.999855 + . ID=CGI_10027820; scaffold198 GLEAN mRNA 756240 756758 0.999855 + . ID=CGI_10027820; scaffold198 WUBlastX LINE_L1 762054 762989 45 + . . scaffold198 WUBlastX LINE_L1 762111 762821 73 + . . scaffold198 WUBlastX LINE_L1 762237 762890 212 + . . scaffold198 WUBlastX LINE_RTE-X 763017 763544 74 + . . scaffold198 WUBlastX LINE_RTE-X 763101 763559 171 + . . scaffold198 WUBlastX LINE_RTE-X 763113 763649 132 + . . scaffold198 WUBlastX LINE_RTE-X 763645 763929 79 + . . scaffold198 WUBlastX LINE_RTE-X 763645 764127 38 + . . scaffold198 WUBlastX LINE_RTE-X 767557 768972 648 + . . scaffold198 GLEAN promoter 770982 771981 0.999999 + . ID=CGI_10027821; scaffold198 GLEAN mRNA 771982 806817 0.999999 + . ID=CGI_10027821; scaffold198 WUBlastX LINE_L2 774437 774850 162 + . . scaffold198 TRF Tandem_Repeat 788757 790227 2353 + . . scaffold198 GLEAN mRNA 790717 794336 1 - . ID=CGI_10027822; scaffold198 GLEAN promoter 794337 795336 1 - . ID=CGI_10027822; scaffold198 WUBlastX LTR_Gypsy 797158 798249 59 + . . scaffold198 WUBlastX LTR_Gypsy 797317 798003 203 + . . scaffold198 WUBlastX LTR_Gypsy 798222 799097 59 + . . scaffold198 WUBlastX LTR_Gypsy 798354 802154 2181 + . . scaffold198 WUBlastX LTR_Gypsy 800115 802553 1238 + . . scaffold198 GLEAN promoter 806239 807238 1 + . ID=CGI_10027823; scaffold198 GLEAN mRNA 807239 808713 1 + . ID=CGI_10027823; scaffold198 TRF Tandem_Repeat 811126 811440 400 + . . scaffold198 GLEAN mRNA 812526 826829 0.248406 - . ID=CGI_10027824; scaffold198 TRF Tandem_Repeat 815929 816171 468 + . . scaffold198 TRF Tandem_Repeat 817308 817659 501 + . . scaffold198 TRF Tandem_Repeat 817827 818102 319 + . . scaffold198 TRF Tandem_Repeat 818703 820014 1308 + . . scaffold198 TRF Tandem_Repeat 821987 822032 74 + . . scaffold198 TRF Tandem_Repeat 821990 822040 50 + . . scaffold198 GLEAN promoter 826830 827829 0.248406 - . ID=CGI_10027824; scaffold198 TRF Tandem_Repeat 828022 828108 104 + . . scaffold198 TRF Tandem_Repeat 828193 828402 160 + . . scaffold198 TRF Tandem_Repeat 828401 828535 153 + . . scaffold198 GLEAN promoter 829365 830364 1 + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 829874 830087 101 + . . scaffold198 TRF Tandem_Repeat 829941 830088 79 + . . scaffold198 TRF Tandem_Repeat 830017 830178 68 + . . scaffold198 GLEAN mRNA 830365 836518 1 + . ID=CGI_10027825; scaffold198 TRF Tandem_Repeat 832555 832660 117 + . . scaffold198 TRF Tandem_Repeat 835218 835326 130 + . . scaffold198 TRF Tandem_Repeat 835218 835339 120 + . . scaffold198 TRF Tandem_Repeat 835658 836048 383 + . . scaffold198 TRF Tandem_Repeat 836240 836360 129 + . . scaffold198 GLEAN mRNA 836770 838722 0.999661 - . ID=CGI_10027826; scaffold198 GLEAN promoter 838150 839149 0.999661 + . ID=CGI_10027827; scaffold198 GLEAN promoter 838723 839722 0.999661 - . ID=CGI_10027826; scaffold198 GLEAN mRNA 839150 841342 0.999661 + . ID=CGI_10027827; scaffold198 TRF Tandem_Repeat 841669 841832 153 + . . scaffold198 TRF Tandem_Repeat 841752 841832 57 + . . scaffold198 TRF Tandem_Repeat 842640 842767 172 + . . scaffold198 GLEAN mRNA 857042 860314 0.999676 - . ID=CGI_10027828; scaffold198 TRF Tandem_Repeat 858783 858968 108 + . . scaffold198 GLEAN promoter 860315 861314 0.999676 - . ID=CGI_10027828; scaffold198 TRF Tandem_Repeat 860842 860878 74 + . . scaffold198 GLEAN promoter 863477 864476 0.999979 + . ID=CGI_10027829; scaffold198 GLEAN mRNA 864477 865082 0.999979 + . ID=CGI_10027829; scaffold198 GLEAN mRNA 867419 882513 0.365267 - . ID=CGI_10027830; scaffold198 TRF Tandem_Repeat 868223 868470 464 + . . scaffold198 TRF Tandem_Repeat 870608 870767 293 + . . scaffold198 GLEAN promoter 882514 883513 0.365267 - . ID=CGI_10027830; scaffold198 GLEAN mRNA 882704 886225 1 - . ID=CGI_10027832; scaffold198 GLEAN promoter 885816 886815 0.763187 + . ID=CGI_10027833; scaffold198 GLEAN promoter 886226 887225 1 - . ID=CGI_10027832; scaffold198 GLEAN mRNA 886816 896676 0.763187 + . ID=CGI_10027833; scaffold198 TRF Tandem_Repeat 890058 890209 178 + . . scaffold198 TRF Tandem_Repeat 895371 895436 107 + . . scaffold198 WUBlastX LINE_RTE-BovB 904864 905688 186 - . . scaffold198 WUBlastX LINE_RTE-BovB 905787 905984 32 - . . scaffold198 WUBlastX LINE_RTE-BovB 905871 905966 35 - . . scaffold198 WUBlastX LINE_RTE-BovB 905892 905987 43 - . . scaffold198 WUBlastX LINE_RTE-BovB 905901 905963 50 - . . scaffold198 WUBlastX LINE_RTE-BovB 905907 906014 29 - . . scaffold198 GLEAN promoter 906719 907718 1 + . ID=CGI_10027834; scaffold198 GLEAN mRNA 907719 917759 1 + . ID=CGI_10027834; scaffold198 TRF Tandem_Repeat 913156 913716 761 + . . scaffold198 TRF Tandem_Repeat 914447 915239 1002 + . . scaffold198 GLEAN mRNA 918895 923686 1 - . ID=CGI_10027835; scaffold198 TRF Tandem_Repeat 922844 922888 56 + . . scaffold198 GLEAN promoter 923687 924686 1 - . ID=CGI_10027835; scaffold198 GLEAN mRNA 923833 925952 1 - . ID=CGI_10027836; scaffold198 GLEAN promoter 925953 926952 1 - . ID=CGI_10027836; scaffold198 TRF Tandem_Repeat 926383 926419 60 + . . scaffold198 GLEAN mRNA 934428 941283 1 - . ID=CGI_10027837; scaffold198 TRF Tandem_Repeat 936413 936854 568 + . . scaffold198 TRF Tandem_Repeat 940778 940820 86 + . . scaffold198 GLEAN promoter 941284 942283 1 - . ID=CGI_10027837; scaffold198 GLEAN mRNA 941785 945161 1 - . ID=CGI_10027838; scaffold198 GLEAN promoter 945162 946161 1 - . ID=CGI_10027838; scaffold198 TRF Tandem_Repeat 948390 948427 76 + . . scaffold198 TRF Tandem_Repeat 973092 973360 208 + . . scaffold198 TRF Tandem_Repeat 973145 973951 819 + . . scaffold198 TRF Tandem_Repeat 973148 974033 1043 + . . scaffold198 TRF Tandem_Repeat 973269 973375 117 + . . scaffold198 TRF Tandem_Repeat 973605 973838 260 + . . scaffold198 TRF Tandem_Repeat 977256 977599 589 + . . scaffold198 TRF Tandem_Repeat 977614 977667 90 + . . scaffold198 TRF Tandem_Repeat 989582 989785 363 + . . scaffold198 GLEAN mRNA 1002801 1008758 1 - . ID=CGI_10027839; scaffold198 GLEAN promoter 1008759 1009758 1 - . ID=CGI_10027839; scaffold198 GLEAN mRNA 1010409 1019842 1 - . ID=CGI_10027840; scaffold198 GLEAN promoter 1019843 1020842 1 - . ID=CGI_10027840; scaffold198 WUBlastX LINE_CR1-L2 1020577 1020642 34 - . . scaffold198 WUBlastX LINE_CR1-L2 1020650 1020841 88 - . . scaffold198 TRF Tandem_Repeat 1020843 1020901 104 + . . scaffold198 TRF Tandem_Repeat 1023717 1023802 156 + . . scaffold198 TRF Tandem_Repeat 1025741 1025825 125 + . . scaffold198 GLEAN promoter 1025784 1026783 0.999984 + . ID=CGI_10027841; scaffold198 GLEAN mRNA 1026784 1029723 0.999984 + . ID=CGI_10027841; scaffold198 GLEAN promoter 1040982 1041981 0.499999 + . ID=CGI_10027842; scaffold198 GLEAN mRNA 1041982 1051910 0.499999 + . ID=CGI_10027842; scaffold198 TRF Tandem_Repeat 1047151 1047225 114 + . . scaffold198 TRF Tandem_Repeat 1047152 1047218 80 + . . scaffold198 TRF Tandem_Repeat 1047230 1047886 889 + . . scaffold198 GLEAN mRNA 1055777 1063572 1 - . ID=CGI_10027843; scaffold198 GLEAN promoter 1063573 1064572 1 - . ID=CGI_10027843; scaffold198 GLEAN promoter 1064409 1065408 0.966615 + . ID=CGI_10027844; scaffold198 GLEAN mRNA 1065409 1083775 0.966615 + . ID=CGI_10027844; scaffold198 TRF Tandem_Repeat 1066252 1066519 437 + . . scaffold198 TRF Tandem_Repeat 1067574 1067798 181 + . . scaffold198 GLEAN mRNA 1073068 1075179 0.593058 - . ID=CGI_10027845; scaffold198 GLEAN promoter 1075180 1076179 0.593058 - . ID=CGI_10027845; scaffold198 TRF Tandem_Repeat 1075421 1075509 108 + . . scaffold198 TRF Tandem_Repeat 1081449 1081744 286 + . . scaffold198 TRF Tandem_Repeat 1081544 1081938 268 + . . scaffold198 GLEAN mRNA 1085425 1102022 0.893513 - . ID=CGI_10027846; scaffold198 TRF Tandem_Repeat 1087396 1088324 1615 + . . scaffold198 TRF Tandem_Repeat 1089120 1089858 815 + . . scaffold198 TRF Tandem_Repeat 1089120 1089862 731 + . . scaffold198 TRF Tandem_Repeat 1089155 1089878 590 + . . scaffold198 TRF Tandem_Repeat 1091902 1092057 249 + . . scaffold198 TRF Tandem_Repeat 1092473 1093030 753 + . . scaffold198 TRF Tandem_Repeat 1098058 1098327 163 + . . scaffold198 GLEAN promoter 1102023 1103022 0.893513 - . ID=CGI_10027846; scaffold198 GLEAN mRNA 1103801 1128130 0.894821 - . ID=CGI_10027847; scaffold198 TRF Tandem_Repeat 1106723 1107513 1564 + . . scaffold198 GLEAN promoter 1118034 1119033 0.481188 + . ID=CGI_10027848; scaffold198 GLEAN mRNA 1119034 1119219 0.481188 + . ID=CGI_10027848; scaffold198 TRF Tandem_Repeat 1127025 1127599 745 + . . scaffold198 GLEAN promoter 1128131 1129130 0.894821 - . ID=CGI_10027847; scaffold198 TRF Tandem_Repeat 1131923 1132076 263 + . . scaffold198 GLEAN mRNA 1137329 1154479 0.999979 - . ID=CGI_10027849; scaffold198 TRF Tandem_Repeat 1140292 1140415 83 + . . scaffold198 TRF Tandem_Repeat 1140294 1140494 164 + . . scaffold198 TRF Tandem_Repeat 1141424 1142221 941 + . . scaffold198 TRF Tandem_Repeat 1147807 1147992 65 + . . scaffold198 TRF Tandem_Repeat 1148966 1149986 1119 + . . scaffold198 TRF Tandem_Repeat 1148966 1149882 1244 + . . scaffold198 TRF Tandem_Repeat 1152881 1152907 54 + . . scaffold198 GLEAN promoter 1154480 1155479 0.999979 - . ID=CGI_10027849; scaffold198 GLEAN promoter 1154548 1155547 0.535042 + . ID=CGI_10027850; scaffold198 TRF Tandem_Repeat 1154698 1154733 54 + . . scaffold198 GLEAN mRNA 1155548 1172013 0.535042 + . ID=CGI_10027850; scaffold198 TRF Tandem_Repeat 1168104 1168148 90 + . . scaffold198 TRF Tandem_Repeat 1168473 1168524 104 + . . scaffold198 GLEAN mRNA 1169314 1180690 0.99935 - . ID=CGI_10027851; scaffold198 WUBlastX LINE_CR1-L2 1171222 1171365 61 - . . scaffold198 WUBlastX LINE_CR1-L2 1171222 1171335 66 - . . scaffold198 WUBlastX LINE_CR1-L2 1171358 1171429 37 - . . scaffold198 TRF Tandem_Repeat 1173822 1174639 1317 + . . scaffold198 GLEAN promoter 1180691 1181690 0.99935 - . ID=CGI_10027851; scaffold198 WUBlastX LINE_RTE-X 1181794 1182795 116 + . . scaffold198 WUBlastX LINE_RTE-X 1182789 1183376 95 + . . scaffold198 WUBlastX LINE_RTE-X 1182813 1183283 109 + . . scaffold198 WUBlastX LINE_RTE-X 1182900 1183280 118 + . . scaffold198 WUBlastX LINE_L2 1184022 1184537 102 + . . scaffold198 WUBlastX LINE_L1 1184100 1184573 233 + . . scaffold198 WUBlastX LINE_CR1 1184559 1185149 64 + . . scaffold198 WUBlastX LINE_RTE-X 1184724 1185521 151 + . . scaffold198 WUBlastX LINE_RTE-X 1185469 1186074 76 + . . scaffold198 WUBlastX LINE_Jockey 1185701 1187446 208 + . . scaffold198 WUBlastX LINE_RTE-X 1186154 1188109 962 + . . scaffold198 TRF Tandem_Repeat 1190598 1190639 84 + . . scaffold198 TRF Tandem_Repeat 1196891 1197059 194 + . . scaffold198 WUBlastX LINE_L1-Tx1 1197247 1197831 92 - . . scaffold198 WUBlastX LINE_L1-Tx1 1197316 1197804 163 - . . scaffold198 WUBlastX LINE_L1-Tx1 1197613 1197876 59 - . . scaffold198 GLEAN mRNA 1222832 1223590 0.992089 - . ID=CGI_10027852; scaffold198 GLEAN promoter 1223591 1224590 0.992089 - . ID=CGI_10027852; scaffold198 WUBlastX LINE_RTE-X 1224145 1225695 590 - . . scaffold198 WUBlastX LINE_Rex-Babar 1224853 1225860 38 - . . scaffold198 TRF Tandem_Repeat 1227206 1227257 95 + . . scaffold198 TRF Tandem_Repeat 1227257 1227298 84 + . . scaffold198 GLEAN mRNA 1227604 1241688 0.999675 - . ID=CGI_10027853; scaffold198 TRF Tandem_Repeat 1227662 1227714 63 + . . scaffold198 GLEAN promoter 1229637 1230636 1 + . ID=CGI_10027854; scaffold198 GLEAN mRNA 1230637 1238989 1 + . ID=CGI_10027854; scaffold198 TRF Tandem_Repeat 1230892 1230948 98 + . . scaffold198 TRF Tandem_Repeat 1231159 1231338 360 + . . scaffold198 GLEAN promoter 1239890 1240889 1 + . ID=CGI_10027855; scaffold198 GLEAN mRNA 1240890 1245615 1 + . ID=CGI_10027855; scaffold198 GLEAN promoter 1241689 1242688 0.999675 - . ID=CGI_10027853; scaffold198 TRF Tandem_Repeat 1243391 1243556 113 + . . scaffold198 TRF Tandem_Repeat 1244057 1244339 106 + . . scaffold198 TRF Tandem_Repeat 1244059 1244254 130 + . . scaffold198 TRF Tandem_Repeat 1244061 1244294 145 + . . scaffold198 TRF Tandem_Repeat 1244200 1244294 86 + . . scaffold198 GLEAN promoter 1246055 1247054 1 + . ID=CGI_10027856; scaffold198 GLEAN mRNA 1247055 1253005 1 + . ID=CGI_10027856; scaffold198 TRF Tandem_Repeat 1248411 1250128 2482 + . . scaffold198 TRF Tandem_Repeat 1248411 1250128 2368 + . . scaffold198 GLEAN mRNA 1253719 1264371 0.999675 - . ID=CGI_10027857; scaffold198 TRF Tandem_Repeat 1255889 1256266 427 + . . scaffold198 TRF Tandem_Repeat 1260544 1260709 332 + . . scaffold198 GLEAN promoter 1263632 1264631 0.99996 + . ID=CGI_10027858; scaffold198 GLEAN promoter 1264372 1265371 0.999675 - . ID=CGI_10027857; scaffold198 GLEAN mRNA 1264632 1271106 0.99996 + . ID=CGI_10027858; scaffold198 TRF Tandem_Repeat 1275012 1275187 262 + . . scaffold198 GLEAN mRNA 1275472 1278212 1 - . ID=CGI_10027859; scaffold198 TRF Tandem_Repeat 1276813 1276852 80 + . . scaffold198 GLEAN promoter 1277713 1278712 1 + . ID=CGI_10027860; scaffold198 GLEAN promoter 1278213 1279212 1 - . ID=CGI_10027859; scaffold198 GLEAN mRNA 1278713 1280205 1 + . ID=CGI_10027860; scaffold198 GLEAN mRNA 1283007 1297481 0.501222 - . ID=CGI_10027861; scaffold198 GLEAN promoter 1296653 1297652 0.932941 + . ID=CGI_10027862; scaffold198 GLEAN promoter 1297482 1298481 0.501222 - . ID=CGI_10027861; scaffold198 GLEAN mRNA 1297653 1305180 0.932941 + . ID=CGI_10027862; scaffold198 TRF Tandem_Repeat 1303191 1303481 127 + . . scaffold198 TRF Tandem_Repeat 1303582 1303671 110 + . . scaffold198 GLEAN mRNA 1312239 1337375 0.960179 - . ID=CGI_10027863; scaffold198 TRF Tandem_Repeat 1312534 1312724 283 + . . scaffold198 TRF Tandem_Repeat 1315775 1316060 493 + . . scaffold198 TRF Tandem_Repeat 1317763 1317812 64 + . . scaffold198 TRF Tandem_Repeat 1317770 1317825 85 + . . scaffold198 TRF Tandem_Repeat 1317774 1317825 59 + . . scaffold198 WUBlastX DNA_MuDR 1329451 1329714 41 - . . scaffold198 WUBlastX DNA_NOF 1329469 1329555 48 - . . scaffold198 WUBlastX DNA_NOF 1330402 1330641 109 - . . scaffold198 WUBlastX DNA_NOF 1330577 1330741 119 - . . scaffold198 GLEAN promoter 1337376 1338375 0.960179 - . ID=CGI_10027863; scaffold198 TRF Tandem_Repeat 1340132 1340181 55 + . . scaffold198 GLEAN promoter 1341279 1342278 0.512289 + . ID=CGI_10027864; scaffold198 GLEAN mRNA 1342279 1349451 0.512289 + . ID=CGI_10027864; scaffold198 TRF Tandem_Repeat 1353149 1353761 552 + . . scaffold198 TRF Tandem_Repeat 1353822 1353938 216 + . . scaffold198 GLEAN mRNA 1354451 1359302 0.610156 - . ID=CGI_10027865; scaffold198 GLEAN promoter 1359303 1360302 0.610156 - . ID=CGI_10027865; scaffold198 TRF Tandem_Repeat 1391568 1392002 701 + . . scaffold198 GLEAN promoter 1392385 1393384 1 + . ID=CGI_10027866; scaffold198 GLEAN mRNA 1393385 1395005 1 + . ID=CGI_10027866; scaffold198 TRF Tandem_Repeat 1397143 1397181 78 + . . scaffold198 TRF Tandem_Repeat 1399380 1399424 63 + . . scaffold198 GLEAN promoter 1404797 1405796 0.549764 + . ID=CGI_10027867; scaffold198 GLEAN mRNA 1405797 1428384 0.549764 + . ID=CGI_10027867; scaffold198 TRF Tandem_Repeat 1409629 1409680 104 + . . scaffold198 TRF Tandem_Repeat 1411542 1411753 204 + . . scaffold198 TRF Tandem_Repeat 1420173 1420283 177 + . . scaffold198 TRF Tandem_Repeat 1420693 1420778 75 + . . scaffold198 TRF Tandem_Repeat 1422023 1422392 435 + . . scaffold198 TRF Tandem_Repeat 1422114 1422224 54 + . . scaffold198 TRF Tandem_Repeat 1422309 1422389 51 + . . scaffold198 TRF Tandem_Repeat 1423606 1424575 531 + . . scaffold198 TRF Tandem_Repeat 1423770 1424563 832 + . . scaffold198 TRF Tandem_Repeat 1423902 1424563 787 + . . scaffold198 TRF Tandem_Repeat 1423978 1424563 854 + . . scaffold198 GLEAN promoter 1430256 1431255 0.999471 + . ID=CGI_10027868; scaffold198 GLEAN mRNA 1431256 1451183 0.999471 + . ID=CGI_10027868; scaffold198 TRF Tandem_Repeat 1431578 1431628 102 + . . scaffold198 TRF Tandem_Repeat 1434414 1434446 66 + . . scaffold198 TRF Tandem_Repeat 1436243 1436514 287 + . . scaffold198 TRF Tandem_Repeat 1444049 1448200 5340 + . . scaffold198 TRF Tandem_Repeat 1446363 1447615 164 + . . scaffold198 GLEAN mRNA 1453731 1454868 0.999998 - . ID=CGI_10027869; scaffold198 GLEAN promoter 1454869 1455868 0.999998 - . ID=CGI_10027869; scaffold198 WUBlastX LINE_RTE-X 1456940 1457023 23 + . . scaffold198 GLEAN mRNA 1457723 1470523 0.880279 - . ID=CGI_10027870; scaffold198 GLEAN promoter 1470524 1471523 0.880279 - . ID=CGI_10027870; scaffold198 GLEAN mRNA 1472954 1476119 0.993464 - . ID=CGI_10027871; scaffold198 GLEAN promoter 1476120 1477119 0.993464 - . ID=CGI_10027871; scaffold198 WUBlastX LINE_RTE-X 1480897 1481124 77 - . . scaffold198 TRF Tandem_Repeat 1484762 1484852 146 + . . scaffold198 TRF Tandem_Repeat 1484818 1484907 99 + . . scaffold198 TRF Tandem_Repeat 1487360 1487466 133 + . . scaffold198 TRF Tandem_Repeat 1487462 1487506 81 + . . scaffold198 TRF Tandem_Repeat 1508951 1509005 65 + . . scaffold198 TRF Tandem_Repeat 1508954 1509009 71 + . . scaffold198 TRF Tandem_Repeat 1513894 1513943 57 + . . scaffold198 WUBlastX LTR_DIRS 1531789 1532748 77 + . . scaffold198 WUBlastX LTR_DIRS 1531966 1532640 130 + . . scaffold198 WUBlastX LTR_DIRS 1532068 1532673 195 + . . scaffold198 TRF Tandem_Repeat 1545406 1545450 90 + . . scaffold198 TRF Tandem_Repeat 1556054 1556119 57 + . . scaffold198 TRF Tandem_Repeat 1558223 1558250 56 + . . scaffold198 TRF Tandem_Repeat 1559328 1559353 52 + . . scaffold198 TRF Tandem_Repeat 1560944 1561134 147 + . . scaffold198 TRF Tandem_Repeat 1562032 1562158 132 + . . scaffold198 WUBlastX LTR_Gypsy 1564315 1564737 68 + . . scaffold198 WUBlastX LTR_Gypsy 1564405 1568091 2643 + . . scaffold198 GLEAN mRNA 1572547 1588639 0.396776 - . ID=CGI_10027872; scaffold198 GLEAN promoter 1588640 1589021 0.396776 - . ID=CGI_10027872; scaffold2 WUBlastX LTR_Pao 74 199 100 - . . scaffold2 WUBlastX LTR_Pao 93 626 303 - . . scaffold2 WUBlastX LTR_Pao 201 629 393 - . . scaffold20 GLEAN mRNA 478 8308 1 - . ID=CGI_10023555; scaffold20 WUBlastX DNA_TcMar-Fot1 3972 4976 160 - . . scaffold20 WUBlastX DNA_TcMar-Fot1 4296 4970 197 - . . scaffold20 WUBlastX DNA_TcMar-Fot1 4972 5505 144 - . . scaffold20 GLEAN promoter 8309 9308 1 - . ID=CGI_10023555; scaffold20 TRF Tandem_Repeat 18020 18050 53 + . . scaffold20 TRF Tandem_Repeat 23019 24051 922 + . . scaffold20 TRF Tandem_Repeat 25357 25663 238 + . . scaffold20 GLEAN mRNA 25974 32204 0.614933 - . ID=CGI_10023556; scaffold20 GLEAN promoter 27495 28494 0.880534 + . ID=CGI_10023557; scaffold20 GLEAN mRNA 28495 32289 0.880534 + . ID=CGI_10023557; scaffold20 WUBlastX LINE_RTE-X 30118 30786 61 + . . scaffold20 WUBlastX LINE_RTE-X 30214 30672 92 + . . scaffold20 WUBlastX LINE_RTE-X 30325 30666 169 + . . scaffold20 WUBlastX DNA_MuDR 31413 31640 73 + . . scaffold20 WUBlastX DNA_MuDR 31813 31908 41 + . . scaffold20 GLEAN promoter 32205 33204 0.614933 - . ID=CGI_10023556; scaffold20 GLEAN mRNA 32319 34887 0.999927 - . ID=CGI_10023558; scaffold20 GLEAN promoter 34888 35887 0.999927 - . ID=CGI_10023558; scaffold20 TRF Tandem_Repeat 35152 35224 146 + . . scaffold20 WUBlastX LTR_Gypsy 38216 38761 51 + . . scaffold20 WUBlastX LTR_Gypsy 38450 38830 72 + . . scaffold20 WUBlastX LTR_Gypsy 38534 38842 95 + . . scaffold20 WUBlastX LTR_Gypsy-Cigr 38594 38830 122 + . . scaffold20 WUBlastX LTR_Gypsy 38612 38962 90 + . . scaffold20 WUBlastX LTR_Gypsy 38830 39048 54 + . . scaffold20 WUBlastX LTR_Gypsy 39459 39575 29 + . . scaffold20 WUBlastX LTR_Gypsy 39504 39578 43 + . . scaffold20 WUBlastX LTR_Gypsy 39504 39599 42 + . . scaffold20 WUBlastX LTR_Gypsy-Gmr1 42704 42919 56 + . . scaffold20 WUBlastX LTR_Gypsy 42793 43140 94 + . . scaffold20 WUBlastX LTR_Gypsy-Cigr 42847 43137 139 + . . scaffold20 WUBlastX LTR_Gypsy-Cigr 42916 43137 143 + . . scaffold20 GLEAN promoter 43137 44136 0.995206 + . ID=CGI_10023559; scaffold20 WUBlastX LTR_Gypsy 43158 43622 93 + . . scaffold20 WUBlastX LTR_Gypsy-Cigr 43158 43412 118 + . . scaffold20 GLEAN mRNA 44137 44328 0.995206 + . ID=CGI_10023559; scaffold20 GLEAN mRNA 45276 45467 1 - . ID=CGI_10023560; scaffold20 GLEAN promoter 45468 46467 1 - . ID=CGI_10023560; scaffold20 GLEAN mRNA 48308 81255 0.673996 - . ID=CGI_10023561; scaffold20 TRF Tandem_Repeat 52043 52772 796 + . . scaffold20 TRF Tandem_Repeat 61394 62290 1602 + . . scaffold20 WUBlastX DNA_Harbinger 81217 81447 82 - . . scaffold20 GLEAN promoter 81256 82255 0.673996 - . ID=CGI_10023561; scaffold20 WUBlastX DNA_Harbinger 81375 81578 54 - . . scaffold20 GLEAN promoter 84901 85900 0.999992 + . ID=CGI_10023562; scaffold20 GLEAN mRNA 85901 95584 0.999992 + . ID=CGI_10023562; scaffold20 WUBlastX DNA_TcMar-Pogo 85970 86059 30 - . . scaffold20 WUBlastX DNA_TcMar-Pogo 86062 86337 45 - . . scaffold20 TRF Tandem_Repeat 88626 89547 1359 + . . scaffold20 TRF Tandem_Repeat 89752 89789 67 + . . scaffold20 GLEAN mRNA 96944 140245 0.183716 - . ID=CGI_10023563; scaffold20 TRF Tandem_Repeat 111694 112784 1540 + . . scaffold20 TRF Tandem_Repeat 120572 120617 51 + . . scaffold20 TRF Tandem_Repeat 127532 127587 112 + . . scaffold20 GLEAN promoter 128233 129232 0.240843 + . ID=CGI_10023564; scaffold20 GLEAN mRNA 129233 205190 0.240843 + . ID=CGI_10023564; scaffold20 WUBlastX LINE_Rex-Babar 132898 132942 20 + . . scaffold20 WUBlastX LINE_L2 132992 133678 236 + . . scaffold20 GLEAN promoter 140246 141245 0.183716 - . ID=CGI_10023563; scaffold20 TRF Tandem_Repeat 168373 168416 88 + . . scaffold20 TRF Tandem_Repeat 177862 177899 76 + . . scaffold20 TRF Tandem_Repeat 182326 182409 64 + . . scaffold20 TRF Tandem_Repeat 182326 182414 81 + . . scaffold20 TRF Tandem_Repeat 182326 182412 63 + . . scaffold20 GLEAN promoter 205236 206235 0.728523 + . ID=CGI_10023565; scaffold20 GLEAN mRNA 206236 212825 0.728523 + . ID=CGI_10023565; scaffold20 TRF Tandem_Repeat 206630 206668 78 + . . scaffold20 TRF Tandem_Repeat 210972 211077 83 + . . scaffold20 WUBlastX LINE_CR1 211482 212153 196 + . . scaffold20 WUBlastX LINE_L1-Tx1 212963 213433 181 + . . scaffold20 TRF Tandem_Repeat 217418 217465 96 + . . scaffold20 TRF Tandem_Repeat 218139 218186 82 + . . scaffold20 TRF Tandem_Repeat 218778 218806 58 + . . scaffold20 WUBlastX LINE_Penelope 220292 220558 44 + . . scaffold20 WUBlastX LINE_Penelope 220334 220582 75 + . . scaffold20 WUBlastX LINE_Penelope 220653 221216 218 + . . scaffold20 WUBlastX LINE_Penelope 220992 221297 40 + . . scaffold20 WUBlastX LINE_Penelope 221350 221793 145 + . . scaffold20 WUBlastX LINE_Penelope 221371 222030 44 + . . scaffold20 TRF Tandem_Repeat 223157 223239 71 + . . scaffold20 TRF Tandem_Repeat 223157 223239 80 + . . scaffold20 WUBlastX LINE_Penelope 223325 223540 48 + . . scaffold20 GLEAN promoter 227565 228564 1 + . ID=CGI_10023566; scaffold20 GLEAN mRNA 228565 229095 1 + . ID=CGI_10023566; scaffold20 TRF Tandem_Repeat 230306 230357 104 + . . scaffold20 TRF Tandem_Repeat 232136 232203 66 + . . scaffold20 TRF Tandem_Repeat 232149 232205 51 + . . scaffold20 WUBlastX LINE_Penelope 232267 232467 47 + . . scaffold20 WUBlastX LINE_L1-Tx1 240464 241648 70 - . . scaffold20 WUBlastX LINE_L1 240748 241095 111 - . . scaffold20 WUBlastX LINE_L1-Tx1 240766 241038 124 - . . scaffold20 WUBlastX LINE_L1 241058 241702 110 - . . scaffold20 WUBlastX LINE_L1 241208 241702 196 - . . scaffold20 WUBlastX LINE_L1-Tx1 241373 241660 203 - . . scaffold20 WUBlastX LINE_L1-Tx1 241582 242142 213 - . . scaffold20 WUBlastX LINE_L1-Tx1 241684 242307 237 - . . scaffold20 WUBlastX LINE_L1-Tx1 242283 242753 78 - . . scaffold20 WUBlastX LINE_L1-Tx1 242298 242672 86 - . . scaffold20 WUBlastX LINE_L1-Tx1 242740 242859 33 - . . scaffold20 WUBlastX LINE_L1-Tx1 242794 242874 40 - . . scaffold20 WUBlastX LINE_L1-Tx1 242873 243274 38 - . . scaffold20 WUBlastX LINE_L1-Tx1 242918 243163 43 - . . scaffold20 TRF Tandem_Repeat 243511 243545 70 + . . scaffold20 GLEAN mRNA 244512 249246 0.937847 - . ID=CGI_10023567; scaffold20 TRF Tandem_Repeat 248445 249134 704 + . . scaffold20 GLEAN promoter 249247 250246 0.937847 - . ID=CGI_10023567; scaffold20 GLEAN promoter 250006 251005 1 + . ID=CGI_10023568; scaffold20 GLEAN mRNA 251006 254059 1 + . ID=CGI_10023568; scaffold20 TRF Tandem_Repeat 252210 252328 184 + . . scaffold20 GLEAN mRNA 255946 279320 0.999351 - . ID=CGI_10023569; scaffold20 TRF Tandem_Repeat 261222 261255 59 + . . scaffold20 GLEAN promoter 279321 280320 0.999351 - . ID=CGI_10023569; scaffold20 GLEAN mRNA 280617 289845 1 - . ID=CGI_10023570; scaffold20 GLEAN promoter 286767 287766 1 + . ID=CGI_10023571; scaffold20 GLEAN mRNA 287767 295999 1 + . ID=CGI_10023571; scaffold20 GLEAN promoter 289846 290845 1 - . ID=CGI_10023570; scaffold20 TRF Tandem_Repeat 293572 293623 77 + . . scaffold20 GLEAN mRNA 302125 308997 0.999796 - . ID=CGI_10023572; scaffold20 TRF Tandem_Repeat 305361 305406 67 + . . scaffold20 TRF Tandem_Repeat 305601 305921 579 + . . scaffold20 GLEAN promoter 308998 309997 0.999796 - . ID=CGI_10023572; scaffold20 GLEAN promoter 310574 311573 1 + . ID=CGI_10023573; scaffold20 TRF Tandem_Repeat 310667 310701 70 + . . scaffold20 GLEAN mRNA 311574 320206 1 + . ID=CGI_10023573; scaffold20 GLEAN mRNA 320558 322954 0.999661 - . ID=CGI_10023574; scaffold20 GLEAN promoter 322955 323954 0.999661 - . ID=CGI_10023574; scaffold20 GLEAN mRNA 323631 327414 1 - . ID=CGI_10023575; scaffold20 GLEAN promoter 326641 327640 0.999676 + . ID=CGI_10023576; scaffold20 GLEAN promoter 327415 328414 1 - . ID=CGI_10023575; scaffold20 GLEAN mRNA 327641 328440 0.999676 + . ID=CGI_10023576; scaffold20 TRF Tandem_Repeat 330791 330836 92 + . . scaffold20 GLEAN mRNA 331302 333980 1 - . ID=CGI_10023577; scaffold20 GLEAN promoter 333981 334980 1 - . ID=CGI_10023577; scaffold20 WUBlastX DNA_TcMar-Marin 339084 339272 82 - . . scaffold20 WUBlastX DNA_TcMar-Marin 339272 339319 25 - . . scaffold20 TRF Tandem_Repeat 342416 342470 92 + . . scaffold20 GLEAN promoter 343918 344917 1 + . ID=CGI_10023578; scaffold20 GLEAN mRNA 344918 350470 1 + . ID=CGI_10023578; scaffold20 TRF Tandem_Repeat 364394 364500 60 + . . scaffold20 GLEAN mRNA 366493 368095 1 - . ID=CGI_10023579; scaffold20 GLEAN promoter 368096 369095 1 - . ID=CGI_10023579; scaffold20 TRF Tandem_Repeat 371696 371754 118 + . . scaffold20 WUBlastX LINE_RTE-X 373167 373361 46 - . . scaffold20 WUBlastX LINE_RTE-X 373281 373397 22 - . . scaffold20 WUBlastX LINE_RTE-X 373411 374043 52 - . . scaffold20 WUBlastX LINE_RTE-X 373862 374410 156 - . . scaffold20 WUBlastX LINE_RTE-X 374081 374497 202 - . . scaffold20 TRF Tandem_Repeat 374729 374840 90 + . . scaffold20 TRF Tandem_Repeat 374729 374842 67 + . . scaffold20 TRF Tandem_Repeat 374729 374792 69 + . . scaffold20 WUBlastX LINE_RTE-X 375342 375449 53 - . . scaffold20 WUBlastX LINE_RTE-X 375360 375449 64 - . . scaffold20 WUBlastX LINE_RTE-X 375360 375473 57 - . . scaffold20 GLEAN promoter 378545 379544 0.980067 + . ID=CGI_10023580; scaffold20 GLEAN mRNA 379545 395602 0.980067 + . ID=CGI_10023580; scaffold20 TRF Tandem_Repeat 388327 389034 476 + . . scaffold20 TRF Tandem_Repeat 388327 389034 574 + . . scaffold20 TRF Tandem_Repeat 388351 389034 567 + . . scaffold20 TRF Tandem_Repeat 394490 394676 268 + . . scaffold20 TRF Tandem_Repeat 394490 394707 211 + . . scaffold20 GLEAN mRNA 399807 400619 0.592974 - . ID=CGI_10023581; scaffold20 GLEAN promoter 400620 401619 0.592974 - . ID=CGI_10023581; scaffold20 GLEAN promoter 400767 401766 1 + . ID=CGI_10023582; scaffold20 GLEAN mRNA 401767 403305 1 + . ID=CGI_10023582; scaffold20 TRF Tandem_Repeat 402112 402377 532 + . . scaffold20 GLEAN mRNA 404504 421929 0.660674 - . ID=CGI_10023583; scaffold20 GLEAN promoter 406329 407328 0.386504 + . ID=CGI_10023584; scaffold20 GLEAN mRNA 407329 431103 0.386504 + . ID=CGI_10023584; scaffold20 TRF Tandem_Repeat 407858 407968 78 + . . scaffold20 TRF Tandem_Repeat 408425 408501 109 + . . scaffold20 TRF Tandem_Repeat 417763 417978 279 + . . scaffold20 TRF Tandem_Repeat 418556 418601 57 + . . scaffold20 TRF Tandem_Repeat 418557 418598 50 + . . scaffold20 TRF Tandem_Repeat 419820 421069 1785 + . . scaffold20 GLEAN promoter 421930 422929 0.660674 - . ID=CGI_10023583; scaffold20 TRF Tandem_Repeat 432237 432276 80 + . . scaffold20 TRF Tandem_Repeat 432334 432374 50 + . . scaffold20 TRF Tandem_Repeat 436952 436998 85 + . . scaffold20 GLEAN mRNA 446306 446575 1 - . ID=CGI_10023585; scaffold20 GLEAN promoter 446576 447575 1 - . ID=CGI_10023585; scaffold20 TRF Tandem_Repeat 452463 452502 71 + . . scaffold20 WUBlastX LINE_RTE-X 457087 457251 64 + . . scaffold20 WUBlastX LINE_RTE-X 457087 457296 58 + . . scaffold20 TRF Tandem_Repeat 464670 464699 51 + . . scaffold20 TRF Tandem_Repeat 465981 466019 78 + . . scaffold20 TRF Tandem_Repeat 478269 478303 70 + . . scaffold20 GLEAN promoter 479076 480075 1 + . ID=CGI_10023586; scaffold20 GLEAN mRNA 480076 480339 1 + . ID=CGI_10023586; scaffold20 WUBlastX DNA_Kolobok 485268 485405 39 + . . scaffold20 WUBlastX DNA_Kolobok 485593 485778 98 + . . scaffold20 WUBlastX DNA_Kolobok 485931 486083 44 + . . scaffold20 WUBlastX DNA_Kolobok 485934 486047 55 + . . scaffold20 WUBlastX DNA_Kolobok 486555 486677 82 + . . scaffold20 WUBlastX DNA_Kolobok 486760 486888 99 + . . scaffold20 TRF Tandem_Repeat 490094 490183 180 + . . scaffold20 TRF Tandem_Repeat 490537 490582 74 + . . scaffold20 WUBlastX LINE_L1 494251 494967 68 + . . scaffold20 WUBlastX LINE_L1 496522 497250 125 + . . scaffold20 WUBlastX LINE_L1-Tx1 496552 497049 231 + . . scaffold20 WUBlastX LINE_L1 497048 497740 44 + . . scaffold20 WUBlastX LINE_L1-Tx1 497387 497791 57 + . . scaffold20 WUBlastX LINE_L1 497459 497776 120 + . . scaffold20 WUBlastX LINE_L1-Tx1 497791 498048 145 + . . scaffold20 WUBlastX LINE_L1-Tx1 498030 499796 864 + . . scaffold20 WUBlastX LINE_L1-Tx1 499807 500265 72 + . . scaffold20 WUBlastX LINE_L1-Tx1 499825 500061 97 + . . scaffold20 WUBlastX LINE_L1 499834 500163 86 + . . scaffold20 TRF Tandem_Repeat 500410 500462 106 + . . scaffold20 TRF Tandem_Repeat 506304 506354 102 + . . scaffold20 TRF Tandem_Repeat 506889 506923 52 + . . scaffold20 TRF Tandem_Repeat 510607 510683 129 + . . scaffold20 WUBlastX DNA_Harbinger 517725 517955 53 + . . scaffold20 WUBlastX DNA_Harbinger 518943 519356 30 + . . scaffold20 WUBlastX DNA_Harbinger 519009 519335 174 + . . scaffold20 WUBlastX DNA_Harbinger 519424 519705 223 + . . scaffold20 WUBlastX DNA_Harbinger 519902 520120 49 + . . scaffold20 WUBlastX DNA_Harbinger 522991 523119 64 - . . scaffold20 WUBlastX DNA_Harbinger 526034 526195 66 - . . scaffold20 TRF Tandem_Repeat 531005 531047 86 + . . scaffold20 WUBlastX LTR_Ngaro 538053 538259 42 + . . scaffold20 WUBlastX LTR_Ngaro 538232 538540 93 + . . scaffold20 WUBlastX LTR_Ngaro 538280 538606 156 + . . scaffold20 WUBlastX LTR_Ngaro 538307 538552 176 + . . scaffold20 WUBlastX LTR_Ngaro 539349 539657 105 + . . scaffold20 WUBlastX LTR_Ngaro 539603 540223 103 + . . scaffold20 WUBlastX LTR_Ngaro 539929 540378 110 + . . scaffold20 WUBlastX LTR_Ngaro 540223 540378 128 + . . scaffold20 GLEAN mRNA 546561 561772 0.999994 - . ID=CGI_10023588; scaffold20 GLEAN promoter 561773 562772 0.999994 - . ID=CGI_10023588; scaffold20 GLEAN mRNA 561801 564249 1 - . ID=CGI_10023589; scaffold20 GLEAN promoter 564250 565249 1 - . ID=CGI_10023589; scaffold20 TRF Tandem_Repeat 569857 569917 113 + . . scaffold20 GLEAN mRNA 572583 573746 1 - . ID=CGI_10023590; scaffold20 GLEAN promoter 573747 574746 1 - . ID=CGI_10023590; scaffold20 GLEAN mRNA 578276 579603 0.995838 - . ID=CGI_10023591; scaffold20 GLEAN promoter 579604 580603 0.995838 - . ID=CGI_10023591; scaffold20 TRF Tandem_Repeat 587658 587694 56 + . . scaffold20 TRF Tandem_Repeat 587872 588939 1056 + . . scaffold20 WUBlastX LINE_CR1 591894 591956 30 - . . scaffold20 WUBlastX LINE_CR1 591983 592894 83 - . . scaffold20 WUBlastX LINE_CR1 592262 592894 102 - . . scaffold20 WUBlastX LINE_CR1 592692 593174 48 - . . scaffold20 WUBlastX LINE_CR1 592899 593039 94 - . . scaffold20 TRF Tandem_Repeat 596740 596783 88 + . . scaffold20 GLEAN promoter 602876 603875 0.647149 + . ID=CGI_10023592; scaffold20 GLEAN mRNA 603876 626316 0.647149 + . ID=CGI_10023592; scaffold20 TRF Tandem_Repeat 606406 606463 116 + . . scaffold20 TRF Tandem_Repeat 607887 607930 88 + . . scaffold20 TRF Tandem_Repeat 617786 617820 70 + . . scaffold20 TRF Tandem_Repeat 621620 621663 88 + . . scaffold20 GLEAN mRNA 631313 635870 1 - . ID=CGI_10023593; scaffold20 TRF Tandem_Repeat 635589 635661 146 + . . scaffold20 GLEAN promoter 635871 636870 1 - . ID=CGI_10023593; scaffold20 TRF Tandem_Repeat 639267 639339 94 + . . scaffold20 GLEAN mRNA 641471 641806 0.970587 - . ID=CGI_10023594; scaffold20 GLEAN promoter 641807 642806 0.970587 - . ID=CGI_10023594; scaffold20 TRF Tandem_Repeat 645229 645256 56 + . . scaffold20 TRF Tandem_Repeat 645830 646005 141 + . . scaffold20 WUBlastX LTR_Ngaro 674402 674506 70 + . . scaffold20 WUBlastX LTR_Gypsy 677220 677990 158 + . . scaffold20 WUBlastX LTR_Gypsy 677361 678125 169 + . . scaffold20 WUBlastX LTR_Gypsy 678152 679270 264 + . . scaffold20 WUBlastX LTR_Gypsy-Cigr 678347 679270 369 + . . scaffold20 WUBlastX LTR_Gypsy 678713 679279 392 + . . scaffold20 WUBlastX LTR_Gypsy 679224 680771 1173 + . . scaffold20 WUBlastX LTR_Gypsy 680728 681522 523 + . . scaffold20 WUBlastX LTR_Gypsy 680794 681735 255 + . . scaffold20 WUBlastX LINE_RTE-BovB 685531 685662 76 - . . scaffold20 WUBlastX LINE_L1-Tx1 702532 703149 323 - . . scaffold20 WUBlastX LTR_Ngaro 708044 708718 372 - . . scaffold20 WUBlastX LTR_Ngaro 712984 713118 47 - . . scaffold20 WUBlastX LTR_Ngaro 713142 713486 99 - . . scaffold20 WUBlastX LTR_Ngaro 713145 713432 116 - . . scaffold20 TRF Tandem_Repeat 716173 716209 74 + . . scaffold20 WUBlastX LTR_Ngaro 730048 730101 28 - . . scaffold20 WUBlastX LTR_Ngaro 730116 730253 59 - . . scaffold20 WUBlastX LTR_Ngaro 731000 731221 67 - . . scaffold20 GLEAN mRNA 731591 731773 0.999372 - . ID=CGI_10023595; scaffold20 WUBlastX LTR_Ngaro 731759 731854 24 - . . scaffold20 GLEAN promoter 731774 732773 0.999372 - . ID=CGI_10023595; scaffold20 TRF Tandem_Repeat 738576 738616 55 + . . scaffold20 WUBlastX LTR_Gypsy 747244 748164 643 - . . scaffold20 WUBlastX LTR_Gypsy 748122 750347 499 - . . scaffold20 WUBlastX LTR_Gypsy 749142 751109 1168 - . . scaffold20 WUBlastX LTR_Gypsy 751002 751160 39 - . . scaffold20 GLEAN mRNA 752421 753041 1 - . ID=CGI_10023596; scaffold20 WUBlastX LTR_Gypsy 752466 753179 150 - . . scaffold20 WUBlastX LTR_Gypsy 752574 753161 195 - . . scaffold20 WUBlastX LTR_Gypsy 752667 753494 84 - . . scaffold20 GLEAN promoter 753042 754041 1 - . ID=CGI_10023596; scaffold20 WUBlastX DNA_Harbinger 756732 756929 28 + . . scaffold20 GLEAN mRNA 756872 758344 0.738574 - . ID=CGI_10023597; scaffold20 GLEAN promoter 758345 759344 0.738574 - . ID=CGI_10023597; scaffold20 TRF Tandem_Repeat 765753 765799 94 + . . scaffold20 GLEAN promoter 773258 774257 0.681651 + . ID=CGI_10023598; scaffold20 GLEAN mRNA 774258 784301 0.681651 + . ID=CGI_10023598; scaffold20 GLEAN promoter 802702 803701 1 + . ID=CGI_10023599; scaffold20 TRF Tandem_Repeat 802711 802787 92 + . . scaffold20 TRF Tandem_Repeat 802732 802795 76 + . . scaffold20 GLEAN mRNA 803702 804664 1 + . ID=CGI_10023599; scaffold20 TRF Tandem_Repeat 835888 836325 661 + . . scaffold20 GLEAN mRNA 837604 846621 0.994281 - . ID=CGI_10023600; scaffold20 TRF Tandem_Repeat 839908 839938 62 + . . scaffold20 TRF Tandem_Repeat 841861 842868 1483 + . . scaffold20 GLEAN promoter 846622 847621 0.994281 - . ID=CGI_10023600; scaffold20 GLEAN mRNA 846881 857431 1 - . ID=CGI_10023601; scaffold20 TRF Tandem_Repeat 853990 854202 390 + . . scaffold20 GLEAN promoter 857432 858431 1 - . ID=CGI_10023601; scaffold200 GLEAN mRNA 11471 15537 0.697892 - . ID=CGI_10006218; scaffold200 TRF Tandem_Repeat 14773 14812 80 + . . scaffold200 WUBlastX LINE_RTE-BovB 14970 15257 45 + . . scaffold200 WUBlastX LINE_RTE-BovB 15084 15263 77 + . . scaffold200 GLEAN promoter 15538 16537 0.697892 - . ID=CGI_10006218; scaffold200 GLEAN mRNA 23257 25175 0.815655 - . ID=CGI_10006220; scaffold200 GLEAN promoter 25176 26175 0.815655 - . ID=CGI_10006220; scaffold200 GLEAN promoter 27354 28353 0.644312 + . ID=CGI_10006223; scaffold200 GLEAN mRNA 28354 40232 0.644312 + . ID=CGI_10006223; scaffold200 TRF Tandem_Repeat 33546 33800 321 + . . scaffold200 TRF Tandem_Repeat 34551 35714 1251 + . . scaffold200 TRF Tandem_Repeat 35767 35819 106 + . . scaffold200 TRF Tandem_Repeat 36684 36712 58 + . . scaffold200 TRF Tandem_Repeat 37031 37071 82 + . . scaffold200 TRF Tandem_Repeat 37191 37260 131 + . . scaffold200 GLEAN promoter 43225 44224 0.999107 + . ID=CGI_10006224; scaffold200 GLEAN mRNA 44225 49093 0.999107 + . ID=CGI_10006224; scaffold200 WUBlastX LTR_Gypsy 46242 46961 64 + . . scaffold200 TRF Tandem_Repeat 48797 48842 74 + . . scaffold200 GLEAN promoter 53230 54229 1 + . ID=CGI_10006225; scaffold200 GLEAN mRNA 54230 55627 1 + . ID=CGI_10006225; scaffold200 TRF Tandem_Repeat 62885 63043 72 + . . scaffold200 WUBlastX DNA_MuDR 63462 63716 81 - . . scaffold200 WUBlastX DNA_MuDR 63534 63791 65 - . . scaffold200 WUBlastX DNA_MuDR 63712 63990 62 - . . scaffold200 WUBlastX DNA_MuDR 63995 64102 58 - . . scaffold200 WUBlastX DNA_MuDR 64101 64331 39 - . . scaffold200 TRF Tandem_Repeat 65075 65270 110 + . . scaffold200 TRF Tandem_Repeat 74853 75656 874 + . . scaffold200 TRF Tandem_Repeat 74855 76300 1536 + . . scaffold200 TRF Tandem_Repeat 74931 76300 1519 + . . scaffold200 TRF Tandem_Repeat 75640 75723 59 + . . scaffold200 TRF Tandem_Repeat 75693 76300 743 + . . scaffold200 GLEAN mRNA 79277 87735 0.815481 - . ID=CGI_10006226; scaffold200 GLEAN promoter 87736 88735 0.815481 - . ID=CGI_10006226; scaffold200 WUBlastX LTR_Ngaro 90757 91272 77 - . . scaffold200 WUBlastX LTR_Ngaro 90775 90942 113 - . . scaffold200 WUBlastX LINE_L2 92454 92873 86 - . . scaffold200 WUBlastX LINE_Proto2 92454 92792 125 - . . scaffold200 WUBlastX LINE_RTE-X 92825 93667 49 - . . scaffold200 WUBlastX LINE_Proto2 93419 93985 47 - . . scaffold200 WUBlastX LINE_Proto2 93982 94302 41 - . . scaffold200 GLEAN mRNA 94463 96005 0.995872 - . ID=CGI_10006227; scaffold200 GLEAN promoter 96006 97005 0.995872 - . ID=CGI_10006227; scaffold200 GLEAN mRNA 102609 112305 0.979252 - . ID=CGI_10006228; scaffold200 GLEAN promoter 112306 113305 0.979252 - . ID=CGI_10006228; scaffold200 WUBlastX LINE_L1-Tx1 113524 113742 73 + . . scaffold200 WUBlastX DNA_Sola 115841 116008 65 - . . scaffold200 TRF Tandem_Repeat 130518 130550 66 + . . scaffold200 TRF Tandem_Repeat 130548 130585 76 + . . scaffold200 GLEAN mRNA 131968 143762 0.991362 - . ID=CGI_10006229; scaffold200 TRF Tandem_Repeat 136330 136396 89 + . . scaffold200 GLEAN promoter 143763 144762 0.991362 - . ID=CGI_10006229; scaffold201 GLEAN mRNA 6546 40658 0.473631 - . ID=CGI_10004417; scaffold201 GLEAN promoter 40659 41658 0.473631 - . ID=CGI_10004417; scaffold201 GLEAN promoter 42995 43994 0.701929 + . ID=CGI_10004418; scaffold201 GLEAN mRNA 43995 65669 0.701929 + . ID=CGI_10004418; scaffold201 GLEAN mRNA 66569 72442 0.90538 - . ID=CGI_10004419; scaffold201 GLEAN promoter 72443 73442 0.90538 - . ID=CGI_10004419; scaffold201 GLEAN promoter 87390 88389 0.930898 + . ID=CGI_10004420; scaffold201 GLEAN mRNA 88390 91333 0.930898 + . ID=CGI_10004420; scaffold203 TRF Tandem_Repeat 2624 2680 75 + . . scaffold203 TRF Tandem_Repeat 3705 3771 80 + . . scaffold203 GLEAN promoter 4454 5453 0.999998 + . ID=CGI_10021060; scaffold203 GLEAN mRNA 5454 10631 0.999998 + . ID=CGI_10021060; scaffold203 TRF Tandem_Repeat 6170 6202 57 + . . scaffold203 TRF Tandem_Repeat 6360 6400 50 + . . scaffold203 TRF Tandem_Repeat 6398 6447 100 + . . scaffold203 WUBlastX DNA_Sola 11076 11309 34 - . . scaffold203 GLEAN mRNA 11885 13015 0.999039 - . ID=CGI_10021061; scaffold203 WUBlastX DNA_Sola 11909 12502 57 - . . scaffold203 WUBlastX DNA_Sola 12023 12880 20 - . . scaffold203 GLEAN promoter 13016 14015 0.999039 - . ID=CGI_10021061; scaffold203 TRF Tandem_Repeat 55889 55929 82 + . . scaffold203 GLEAN promoter 61736 62735 0.979546 + . ID=CGI_10021062; scaffold203 WUBlastX LTR_Ngaro 61803 62735 365 - . . scaffold203 GLEAN mRNA 62736 68919 0.979546 + . ID=CGI_10021062; scaffold203 GLEAN promoter 72754 73753 0.651071 + . ID=CGI_10021063; scaffold203 TRF Tandem_Repeat 73261 73302 84 + . . scaffold203 GLEAN mRNA 73754 84317 0.651071 + . ID=CGI_10021063; scaffold203 WUBlastX LINE_RTE-X 77203 77532 64 - . . scaffold203 TRF Tandem_Repeat 80167 80209 52 + . . scaffold203 GLEAN promoter 84709 85708 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 85558 85609 88 + . . scaffold203 GLEAN mRNA 85709 116665 0.258685 + . ID=CGI_10021064; scaffold203 TRF Tandem_Repeat 86491 87122 403 + . . scaffold203 TRF Tandem_Repeat 86491 87122 500 + . . scaffold203 TRF Tandem_Repeat 86493 87125 501 + . . scaffold203 TRF Tandem_Repeat 86505 87125 207 + . . scaffold203 TRF Tandem_Repeat 87152 87703 421 + . . scaffold203 TRF Tandem_Repeat 87152 87672 277 + . . scaffold203 TRF Tandem_Repeat 92385 92445 97 + . . scaffold203 TRF Tandem_Repeat 92391 92445 74 + . . scaffold203 TRF Tandem_Repeat 92615 93976 2123 + . . scaffold203 TRF Tandem_Repeat 103595 103696 114 + . . scaffold203 TRF Tandem_Repeat 103595 103696 62 + . . scaffold203 WUBlastX DNA_Crypton 108682 109695 609 - . . scaffold203 WUBlastX DNA_TcMar-Marin 111409 111600 23 - . . scaffold203 WUBlastX DNA_TcMar-Marin 111559 111600 25 - . . scaffold203 WUBlastX DNA_TcMar-Marin 112242 112559 22 - . . scaffold203 WUBlastX DNA_TcMar-Marin 112302 112457 92 - . . scaffold203 WUBlastX DNA_TcMar-Marin 112486 112896 68 - . . scaffold203 TRF Tandem_Repeat 118923 118965 50 + . . scaffold203 TRF Tandem_Repeat 118928 118965 51 + . . scaffold203 GLEAN promoter 122455 123454 0.724245 + . ID=CGI_10021065; scaffold203 GLEAN mRNA 123455 127540 0.724245 + . ID=CGI_10021065; scaffold203 TRF Tandem_Repeat 132177 132238 115 + . . scaffold203 WUBlastX LINE_Penelope 140467 141045 122 - . . scaffold203 WUBlastX LINE_Penelope 140614 141036 136 - . . scaffold203 WUBlastX LINE_Penelope 141111 141938 449 - . . scaffold203 WUBlastX LTR_Ngaro 151308 152150 97 + . . scaffold203 GLEAN promoter 151341 152340 0.733106 + . ID=CGI_10021066; scaffold203 WUBlastX LTR_Ngaro 151638 152270 61 + . . scaffold203 WUBlastX LTR_Ngaro 151731 152174 219 + . . scaffold203 GLEAN mRNA 152341 152538 0.733106 + . ID=CGI_10021066; scaffold203 WUBlastX LTR_Ngaro 152557 152922 80 + . . scaffold203 WUBlastX LTR_Ngaro 152569 152874 170 + . . scaffold203 TRF Tandem_Repeat 153196 153244 80 + . . scaffold203 TRF Tandem_Repeat 153257 153344 113 + . . scaffold203 WUBlastX LTR_Ngaro 153385 154602 805 + . . scaffold203 WUBlastX LTR_Ngaro 154539 155477 342 + . . scaffold203 WUBlastX LINE_L2 155533 156087 77 + . . scaffold203 WUBlastX LINE_RTE-X 155719 156033 84 + . . scaffold203 TRF Tandem_Repeat 161515 161565 66 + . . scaffold203 TRF Tandem_Repeat 165921 166320 493 + . . scaffold203 TRF Tandem_Repeat 170019 170051 57 + . . scaffold203 TRF Tandem_Repeat 177724 177775 59 + . . scaffold203 TRF Tandem_Repeat 182880 182916 74 + . . scaffold203 TRF Tandem_Repeat 188217 188870 932 + . . scaffold203 TRF Tandem_Repeat 199566 199604 51 + . . scaffold203 TRF Tandem_Repeat 206619 206645 54 + . . scaffold203 TRF Tandem_Repeat 206643 206671 58 + . . scaffold203 TRF Tandem_Repeat 208213 208259 60 + . . scaffold203 WUBlastX LINE_L1-Tx1 208368 208685 56 - . . scaffold203 WUBlastX LINE_L1-Tx1 209187 209570 53 - . . scaffold203 WUBlastX LINE_L1 209517 209588 22 - . . scaffold203 TRF Tandem_Repeat 209855 209908 54 + . . scaffold203 TRF Tandem_Repeat 209855 209913 73 + . . scaffold203 TRF Tandem_Repeat 210442 211232 922 + . . scaffold203 TRF Tandem_Repeat 215561 215598 60 + . . scaffold203 TRF Tandem_Repeat 220815 220842 56 + . . scaffold203 WUBlastX LTR_Pao 225799 226239 61 + . . scaffold203 WUBlastX LTR_Gypsy 225916 226719 146 + . . scaffold203 WUBlastX LTR_Gypsy-Cigr 226705 228912 1084 + . . scaffold203 WUBlastX LTR_Gypsy 227290 228966 1167 + . . scaffold203 WUBlastX LTR_Gypsy 227662 230193 983 + . . scaffold203 WUBlastX LTR_Gypsy-Cigr 229195 230781 520 + . . scaffold203 WUBlastX LTR_Gypsy 229258 230535 826 + . . scaffold203 WUBlastX DNA_IS4EU 231119 231310 30 + . . scaffold203 WUBlastX DNA_IS4EU 231562 232230 273 + . . scaffold203 WUBlastX DNA_IS4EU 232245 232541 158 + . . scaffold203 WUBlastX DNA_Kolobok-IS4 232654 233481 160 - . . scaffold203 WUBlastX DNA_Kolobok-IS4 232861 233484 249 - . . scaffold203 WUBlastX DNA_IS4EU 232909 233739 129 - . . scaffold203 WUBlastX DNA_IS4EU 233856 234380 52 - . . scaffold203 WUBlastX DNA_IS4EU 233880 234206 97 - . . scaffold203 GLEAN promoter 239078 240077 0.386443 + . ID=CGI_10021067; scaffold203 GLEAN mRNA 240078 263515 0.386443 + . ID=CGI_10021067; scaffold203 TRF Tandem_Repeat 243467 244262 1324 + . . scaffold203 TRF Tandem_Repeat 244271 244330 84 + . . scaffold203 TRF Tandem_Repeat 252076 252105 51 + . . scaffold203 TRF Tandem_Repeat 256449 256950 445 + . . scaffold203 TRF Tandem_Repeat 257691 257735 63 + . . scaffold203 TRF Tandem_Repeat 269524 269569 92 + . . scaffold203 WUBlastX DNA_Maverick 279413 279610 58 - . . scaffold203 WUBlastX LINE_RTE-BovB 283464 283772 187 - . . scaffold203 WUBlastX LINE_RTE-BovB 283778 283885 82 - . . scaffold203 WUBlastX LINE_RTE-BovB 283781 283948 62 - . . scaffold203 GLEAN promoter 287415 288414 1 + . ID=CGI_10021068; scaffold203 GLEAN mRNA 288415 289776 1 + . ID=CGI_10021068; scaffold203 TRF Tandem_Repeat 302799 302941 106 + . . scaffold203 GLEAN promoter 325908 326907 0.998274 + . ID=CGI_10021069; scaffold203 GLEAN mRNA 326908 329781 0.998274 + . ID=CGI_10021069; scaffold203 TRF Tandem_Repeat 332932 332973 84 + . . scaffold203 TRF Tandem_Repeat 339422 339493 144 + . . scaffold203 WUBlastX LINE_L2 366413 366517 27 + . . scaffold203 WUBlastX LINE_CR1-L2 366493 366624 72 + . . scaffold203 WUBlastX LINE_L2 366514 366609 74 + . . scaffold203 WUBlastX LINE_L2 366597 367262 193 + . . scaffold203 TRF Tandem_Repeat 373474 373514 82 + . . scaffold203 GLEAN promoter 375437 376436 0.482825 + . ID=CGI_10021070; scaffold203 GLEAN mRNA 376437 414685 0.482825 + . ID=CGI_10021070; scaffold203 GLEAN mRNA 380949 400052 0.995245 - . ID=CGI_10021071; scaffold203 TRF Tandem_Repeat 381464 381490 54 + . . scaffold203 TRF Tandem_Repeat 396741 396765 50 + . . scaffold203 WUBlastX DNA_Sola 397563 397976 92 + . . scaffold203 WUBlastX DNA_Sola 397949 398395 185 + . . scaffold203 GLEAN promoter 400053 401052 0.995245 - . ID=CGI_10021071; scaffold203 TRF Tandem_Repeat 413003 413030 56 + . . scaffold203 TRF Tandem_Repeat 420810 420888 158 + . . scaffold203 GLEAN promoter 421258 422257 0.3597 + . ID=CGI_10021072; scaffold203 TRF Tandem_Repeat 421496 421553 72 + . . scaffold203 GLEAN mRNA 422258 430817 0.3597 + . ID=CGI_10021072; scaffold203 WUBlastX LINE_RTE-X 425695 426153 40 - . . scaffold203 WUBlastX LINE_RTE-X 425854 426126 61 - . . scaffold203 GLEAN promoter 430495 431494 0.461924 + . ID=CGI_10021073; scaffold203 GLEAN mRNA 431495 460852 0.461924 + . ID=CGI_10021073; scaffold203 TRF Tandem_Repeat 437063 437257 327 + . . scaffold203 TRF Tandem_Repeat 446675 446736 124 + . . scaffold203 TRF Tandem_Repeat 446954 447002 73 + . . scaffold203 WUBlastX LINE_RTE-X 453175 453552 23 - . . scaffold203 WUBlastX LINE_RTE-X 453340 453591 52 - . . scaffold203 TRF Tandem_Repeat 457180 457788 634 + . . scaffold203 TRF Tandem_Repeat 457180 457785 602 + . . scaffold203 GLEAN mRNA 470548 471774 0.999208 - . ID=CGI_10021074; scaffold203 GLEAN promoter 471775 472774 0.999208 - . ID=CGI_10021074; scaffold203 TRF Tandem_Repeat 483304 483353 75 + . . scaffold203 TRF Tandem_Repeat 483733 483802 140 + . . scaffold203 TRF Tandem_Repeat 485266 485315 91 + . . scaffold203 GLEAN promoter 494398 495397 0.333333 + . ID=CGI_10021075; scaffold203 GLEAN mRNA 495398 496914 0.333333 + . ID=CGI_10021075; scaffold203 WUBlastX LTR_Ngaro 499141 499899 46 + . . scaffold203 WUBlastX LTR_Ngaro 499412 500203 74 + . . scaffold203 WUBlastX LTR_Ngaro 499585 499818 79 + . . scaffold203 WUBlastX LTR_Ngaro 499588 499899 76 + . . scaffold203 WUBlastX LTR_Ngaro 499934 500203 128 + . . scaffold203 WUBlastX LTR_Ngaro 500224 500361 24 + . . scaffold203 WUBlastX LTR_Ngaro 500316 500447 28 + . . scaffold203 WUBlastX LTR_Ngaro 500331 500441 48 + . . scaffold203 GLEAN promoter 506685 507684 1 + . ID=CGI_10021076; scaffold203 GLEAN mRNA 507685 510037 1 + . ID=CGI_10021076; scaffold203 TRF Tandem_Repeat 510402 510435 68 + . . scaffold203 WUBlastX LTR_Ngaro 514616 514999 93 + . . scaffold203 WUBlastX LTR_Ngaro 514757 515053 66 + . . scaffold203 WUBlastX LTR_Ngaro 515135 515320 26 + . . scaffold203 WUBlastX LTR_Ngaro 515922 516632 432 + . . scaffold203 WUBlastX LTR_Ngaro 516652 516876 105 + . . scaffold203 WUBlastX LTR_Ngaro 516652 516966 92 + . . scaffold203 WUBlastX LTR_Ngaro 516885 516986 54 + . . scaffold203 WUBlastX LTR_Ngaro 516994 517188 32 + . . scaffold203 WUBlastX LTR_Ngaro 517410 517679 100 + . . scaffold203 WUBlastX LTR_Ngaro 517794 518063 85 + . . scaffold203 WUBlastX LTR_Ngaro 517866 518063 112 + . . scaffold203 TRF Tandem_Repeat 518868 518911 52 + . . scaffold203 TRF Tandem_Repeat 522965 524451 900 + . . scaffold203 TRF Tandem_Repeat 523005 523219 276 + . . scaffold203 TRF Tandem_Repeat 523464 524451 881 + . . scaffold203 GLEAN mRNA 530292 545045 0.999964 - . ID=CGI_10021077; scaffold203 TRF Tandem_Repeat 534773 534805 66 + . . scaffold203 GLEAN promoter 545046 546045 0.999964 - . ID=CGI_10021077; scaffold203 TRF Tandem_Repeat 545940 545975 72 + . . scaffold203 TRF Tandem_Repeat 546065 546104 80 + . . scaffold203 TRF Tandem_Repeat 546822 546861 71 + . . scaffold203 TRF Tandem_Repeat 551692 551728 74 + . . scaffold203 GLEAN mRNA 556723 557034 0.999372 - . ID=CGI_10021078; scaffold203 GLEAN promoter 557035 558034 0.999372 - . ID=CGI_10021078; scaffold203 TRF Tandem_Repeat 558260 558305 83 + . . scaffold203 TRF Tandem_Repeat 558936 558985 100 + . . scaffold203 GLEAN promoter 562492 563491 0.999989 + . ID=CGI_10021079; scaffold203 GLEAN mRNA 563492 571108 0.999989 + . ID=CGI_10021079; scaffold203 TRF Tandem_Repeat 567925 568019 163 + . . scaffold203 TRF Tandem_Repeat 569819 569894 127 + . . scaffold203 GLEAN mRNA 573486 579906 0.999992 - . ID=CGI_10021080; scaffold203 TRF Tandem_Repeat 573997 574039 86 + . . scaffold203 GLEAN promoter 579907 580906 0.999992 - . ID=CGI_10021080; scaffold203 TRF Tandem_Repeat 584675 584722 96 + . . scaffold203 GLEAN promoter 598632 599631 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 599389 599480 80 + . . scaffold203 TRF Tandem_Repeat 599394 599494 67 + . . scaffold203 GLEAN mRNA 599632 671214 0.810319 + . ID=CGI_10021081; scaffold203 TRF Tandem_Repeat 600639 600691 106 + . . scaffold203 TRF Tandem_Repeat 603663 603698 72 + . . scaffold203 TRF Tandem_Repeat 610775 610948 161 + . . scaffold203 TRF Tandem_Repeat 610781 610955 145 + . . scaffold203 TRF Tandem_Repeat 615057 615286 239 + . . scaffold203 TRF Tandem_Repeat 620192 620298 117 + . . scaffold203 TRF Tandem_Repeat 621125 621172 87 + . . scaffold203 TRF Tandem_Repeat 624126 624239 140 + . . scaffold203 WUBlastX LINE_RTE-X 628107 628337 30 - . . scaffold203 WUBlastX LINE_RTE-X 628143 628385 75 - . . scaffold203 WUBlastX LINE_RTE-X 628185 628388 89 - . . scaffold203 WUBlastX LINE_RTE-X 628610 629374 103 - . . scaffold203 WUBlastX LINE_RTE-X 628979 629326 104 - . . scaffold203 WUBlastX LINE_RTE-X 629373 629537 71 - . . scaffold203 TRF Tandem_Repeat 632245 632333 142 + . . scaffold203 TRF Tandem_Repeat 632878 633176 264 + . . scaffold203 TRF Tandem_Repeat 635275 635309 70 + . . scaffold203 TRF Tandem_Repeat 635672 636200 772 + . . scaffold203 TRF Tandem_Repeat 639957 640193 134 + . . scaffold203 TRF Tandem_Repeat 639981 640880 556 + . . scaffold203 TRF Tandem_Repeat 639981 640169 258 + . . scaffold203 TRF Tandem_Repeat 639999 640714 549 + . . scaffold203 TRF Tandem_Repeat 640213 640321 103 + . . scaffold203 TRF Tandem_Repeat 640366 640714 398 + . . scaffold203 TRF Tandem_Repeat 640794 640904 120 + . . scaffold203 TRF Tandem_Repeat 642441 642650 213 + . . scaffold203 TRF Tandem_Repeat 642441 642649 241 + . . scaffold203 TRF Tandem_Repeat 644892 645161 382 + . . scaffold203 TRF Tandem_Repeat 645841 645884 70 + . . scaffold203 TRF Tandem_Repeat 647663 647901 327 + . . scaffold203 TRF Tandem_Repeat 647702 647901 391 + . . scaffold204 GLEAN mRNA 1274 2823 1 - . ID=CGI_10026085; scaffold204 GLEAN promoter 2824 3823 1 - . ID=CGI_10026085; scaffold204 TRF Tandem_Repeat 3078 3108 55 + . . scaffold204 TRF Tandem_Repeat 3082 3145 58 + . . scaffold204 GLEAN promoter 10059 11058 0.999999 + . ID=CGI_10026086; scaffold204 GLEAN mRNA 11059 14135 0.999999 + . ID=CGI_10026086; scaffold204 TRF Tandem_Repeat 23561 23731 164 + . . scaffold204 TRF Tandem_Repeat 23561 23731 200 + . . scaffold204 TRF Tandem_Repeat 23764 23946 174 + . . scaffold204 TRF Tandem_Repeat 24031 24117 95 + . . scaffold204 GLEAN promoter 25140 26139 1 + . ID=CGI_10026087; scaffold204 GLEAN mRNA 26140 29222 1 + . ID=CGI_10026087; scaffold204 TRF Tandem_Repeat 34944 36331 2077 + . . scaffold204 GLEAN mRNA 37773 52969 0.996606 - . ID=CGI_10026088; scaffold204 TRF Tandem_Repeat 38035 38078 88 + . . scaffold204 WUBlastX DNA_TcMar-Marin 43600 43782 54 + . . scaffold204 GLEAN promoter 52970 53969 0.996606 - . ID=CGI_10026088; scaffold204 GLEAN mRNA 54936 56160 1 - . ID=CGI_10026089; scaffold204 GLEAN promoter 56161 57160 1 - . ID=CGI_10026089; scaffold204 GLEAN promoter 57606 58605 1 + . ID=CGI_10026090; scaffold204 GLEAN mRNA 58606 61362 1 + . ID=CGI_10026090; scaffold204 GLEAN mRNA 63338 83052 0.806649 - . ID=CGI_10026091; scaffold204 TRF Tandem_Repeat 72021 72274 276 + . . scaffold204 TRF Tandem_Repeat 75989 76932 1656 + . . scaffold204 TRF Tandem_Repeat 77763 77987 369 + . . scaffold204 GLEAN promoter 83053 84052 0.806649 - . ID=CGI_10026091; scaffold204 GLEAN promoter 85156 86155 0.999675 + . ID=CGI_10026092; scaffold204 GLEAN mRNA 86156 93679 0.999675 + . ID=CGI_10026092; scaffold204 TRF Tandem_Repeat 87612 88197 947 + . . scaffold204 GLEAN mRNA 88784 88966 0.618241 - . ID=CGI_10026093; scaffold204 GLEAN promoter 88967 89966 0.618241 - . ID=CGI_10026093; scaffold204 GLEAN mRNA 100079 117763 0.991044 - . ID=CGI_10026094; scaffold204 TRF Tandem_Repeat 112169 112223 103 + . . scaffold204 WUBlastX LTR_Gypsy 117197 117364 23 - . . scaffold204 GLEAN promoter 117764 118763 0.991044 - . ID=CGI_10026094; scaffold204 GLEAN mRNA 117793 125186 0.929911 - . ID=CGI_10026095; scaffold204 TRF Tandem_Repeat 121296 121334 71 + . . scaffold204 GLEAN promoter 125187 126186 0.929911 - . ID=CGI_10026095; scaffold204 GLEAN promoter 131128 132127 0.378854 + . ID=CGI_10026096; scaffold204 GLEAN mRNA 132128 157363 0.378854 + . ID=CGI_10026096; scaffold204 GLEAN mRNA 138329 141269 1 - . ID=CGI_10026097; scaffold204 TRF Tandem_Repeat 138972 139017 92 + . . scaffold204 GLEAN promoter 141270 142269 1 - . ID=CGI_10026097; scaffold204 TRF Tandem_Repeat 142487 142612 146 + . . scaffold204 TRF Tandem_Repeat 150262 150403 106 + . . scaffold204 TRF Tandem_Repeat 150452 150612 135 + . . scaffold204 TRF Tandem_Repeat 150470 150620 144 + . . scaffold204 TRF Tandem_Repeat 150712 150805 91 + . . scaffold204 TRF Tandem_Repeat 152361 152411 102 + . . scaffold204 TRF Tandem_Repeat 162658 162753 126 + . . scaffold204 TRF Tandem_Repeat 162935 163036 141 + . . scaffold204 TRF Tandem_Repeat 162935 163036 125 + . . scaffold204 WUBlastX LINE_RTE-X 163659 164120 61 + . . scaffold204 WUBlastX LINE_RTE-X 163677 163880 85 + . . scaffold204 TRF Tandem_Repeat 167675 167715 82 + . . scaffold204 TRF Tandem_Repeat 171033 171057 50 + . . scaffold204 TRF Tandem_Repeat 174091 175041 1350 + . . scaffold204 GLEAN promoter 182030 183029 0.995871 + . ID=CGI_10026098; scaffold204 GLEAN mRNA 183030 195002 0.995871 + . ID=CGI_10026098; scaffold204 TRF Tandem_Repeat 184477 185082 408 + . . scaffold204 TRF Tandem_Repeat 189773 189835 126 + . . scaffold204 GLEAN mRNA 197004 201463 0.999999 - . ID=CGI_10026099; scaffold204 GLEAN promoter 201464 202463 0.999999 - . ID=CGI_10026099; scaffold204 GLEAN mRNA 205075 206573 0.999996 - . ID=CGI_10026100; scaffold204 GLEAN promoter 206574 207573 0.999996 - . ID=CGI_10026100; scaffold204 GLEAN mRNA 211829 216376 0.999999 - . ID=CGI_10026101; scaffold204 GLEAN promoter 216377 217376 0.999999 - . ID=CGI_10026101; scaffold204 WUBlastX DNA_TcMar-Tc2 222108 222317 48 + . . scaffold204 WUBlastX DNA_TcMar-Fot1 222503 222736 46 + . . scaffold204 WUBlastX DNA_TcMar-Tc2 222563 222814 50 + . . scaffold204 WUBlastX DNA_TcMar-Tc2 222569 222769 51 + . . scaffold204 TRF Tandem_Repeat 236800 236864 94 + . . scaffold204 TRF Tandem_Repeat 236801 236859 64 + . . scaffold204 TRF Tandem_Repeat 236809 236859 75 + . . scaffold204 TRF Tandem_Repeat 236813 236863 66 + . . scaffold204 TRF Tandem_Repeat 244077 244114 76 + . . scaffold204 TRF Tandem_Repeat 265550 265580 62 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 267935 268141 45 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 267935 268195 40 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 268580 268732 33 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 268613 268732 43 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 268756 269115 100 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 268822 269115 109 + . . scaffold204 TRF Tandem_Repeat 269522 269600 158 + . . scaffold204 GLEAN mRNA 270844 308042 0.270192 - . ID=CGI_10026102; scaffold204 TRF Tandem_Repeat 284217 284257 50 + . . scaffold204 TRF Tandem_Repeat 288547 288598 95 + . . scaffold204 TRF Tandem_Repeat 292143 292196 108 + . . scaffold204 TRF Tandem_Repeat 294211 294263 97 + . . scaffold204 TRF Tandem_Repeat 294211 294285 87 + . . scaffold204 WUBlastX LTR_Ngaro 299963 300190 63 + . . scaffold204 WUBlastX LTR_Ngaro 300005 300184 86 + . . scaffold204 WUBlastX LTR_Ngaro 300059 300184 88 + . . scaffold204 GLEAN promoter 308043 309042 0.270192 - . ID=CGI_10026102; scaffold204 TRF Tandem_Repeat 317440 317486 94 + . . scaffold204 GLEAN mRNA 318709 324303 0.610548 - . ID=CGI_10026103; scaffold204 WUBlastX LINE_CR1-L2 320815 321213 26 + . . scaffold204 WUBlastX LINE_CR1-L2 320821 320964 26 + . . scaffold204 WUBlastX LINE_L2 321505 321684 54 + . . scaffold204 GLEAN promoter 324304 325303 0.610548 - . ID=CGI_10026103; scaffold204 TRF Tandem_Repeat 333216 333273 73 + . . scaffold204 TRF Tandem_Repeat 333640 333693 90 + . . scaffold204 TRF Tandem_Repeat 337392 337680 227 + . . scaffold204 TRF Tandem_Repeat 338528 338690 105 + . . scaffold204 TRF Tandem_Repeat 344153 344183 55 + . . scaffold204 TRF Tandem_Repeat 355444 355493 100 + . . scaffold204 TRF Tandem_Repeat 358180 358301 208 + . . scaffold204 WUBlastX LTR_Gypsy 371148 371225 23 - . . scaffold204 WUBlastX LTR_Gypsy 371231 371521 62 - . . scaffold204 WUBlastX LTR_Gypsy 371390 371551 78 - . . scaffold204 WUBlastX LTR_Gypsy 371520 371615 58 - . . scaffold204 WUBlastX LTR_Gypsy 371572 372162 193 - . . scaffold204 WUBlastX LTR_Gypsy-Cigr 371680 372162 304 - . . scaffold204 WUBlastX LTR_Gypsy 371785 372297 73 - . . scaffold204 WUBlastX LINE_L1 372632 373351 79 + . . scaffold204 WUBlastX LINE_L2 372770 373306 91 + . . scaffold204 WUBlastX LINE_L1-Tx1 374403 378104 1145 + . . scaffold204 GLEAN promoter 377797 378796 0.999998 + . ID=CGI_10026105; scaffold204 GLEAN mRNA 378797 380865 0.999998 + . ID=CGI_10026105; scaffold204 GLEAN promoter 393042 394041 0.339936 + . ID=CGI_10026106; scaffold204 GLEAN mRNA 394042 414406 0.339936 + . ID=CGI_10026106; scaffold204 WUBlastX DNA_Kolobok-Hyd 394288 394572 25 + . . scaffold204 WUBlastX DNA_Kolobok-Hyd 394336 394725 23 + . . scaffold204 WUBlastX DNA_Kolobok-Hyd 395170 395295 31 + . . scaffold204 WUBlastX DNA_Kolobok-Hyd 395227 395301 42 + . . scaffold204 WUBlastX DNA_Kolobok-Hyd 395453 395677 27 + . . scaffold204 WUBlastX LINE_CR1-L2 399826 400074 47 + . . scaffold204 WUBlastX LINE_CR1-L2 399883 400065 73 + . . scaffold204 TRF Tandem_Repeat 405621 405856 190 + . . scaffold204 TRF Tandem_Repeat 405646 405822 151 + . . scaffold204 WUBlastX LINE_CR1 407459 407782 22 - . . scaffold204 WUBlastX DNA_Harbinger 411588 411800 91 + . . scaffold204 WUBlastX DNA_Harbinger 413254 413697 178 + . . scaffold204 WUBlastX DNA_Harbinger 413816 414070 217 + . . scaffold204 WUBlastX DNA_Harbinger 413873 414139 34 + . . scaffold204 WUBlastX DNA_Harbinger 414185 414334 66 + . . scaffold204 WUBlastX DNA_Harbinger 414185 414403 49 + . . scaffold204 WUBlastX DNA_TcMar-Marin 418111 418209 23 + . . scaffold204 WUBlastX DNA_TcMar-Marin 418140 418694 95 + . . scaffold204 WUBlastX DNA_TcMar-Marin 418392 418661 98 + . . scaffold204 WUBlastX DNA_TcMar-Marin 418413 418631 116 + . . scaffold204 WUBlastX DNA_TcMar-Marin 418609 418794 34 + . . scaffold204 WUBlastX DNA_TcMar-Marin 419464 419580 30 + . . scaffold204 WUBlastX DNA_TcMar-Marin 419485 419766 38 + . . scaffold204 WUBlastX DNA_TcMar-Marin 419488 419616 47 + . . scaffold204 WUBlastX DNA_TcMar-Marin 419574 419720 62 + . . scaffold204 GLEAN mRNA 420205 431489 0.478476 - . ID=CGI_10026107; scaffold204 TRF Tandem_Repeat 422715 423020 230 + . . scaffold204 TRF Tandem_Repeat 422715 423014 238 + . . scaffold204 TRF Tandem_Repeat 422715 423035 198 + . . scaffold204 TRF Tandem_Repeat 423590 423870 303 + . . scaffold204 TRF Tandem_Repeat 423599 423870 436 + . . scaffold204 WUBlastX LINE_L1-Tx1 427844 431401 1118 - . . scaffold204 GLEAN promoter 431490 432489 0.478476 - . ID=CGI_10026107; scaffold204 GLEAN mRNA 431560 431967 0.59015 - . ID=CGI_10026108; scaffold204 GLEAN promoter 431968 432967 0.59015 - . ID=CGI_10026108; scaffold204 WUBlastX LINE_CR1 432143 432697 145 - . . scaffold204 TRF Tandem_Repeat 439216 439268 99 + . . scaffold204 GLEAN promoter 443788 444787 0.594196 + . ID=CGI_10026109; scaffold204 GLEAN mRNA 444788 462109 0.594196 + . ID=CGI_10026109; scaffold204 TRF Tandem_Repeat 467097 467217 82 + . . scaffold204 TRF Tandem_Repeat 470678 470743 123 + . . scaffold204 GLEAN mRNA 472526 473701 0.999375 - . ID=CGI_10026110; scaffold204 GLEAN promoter 473702 474701 0.999375 - . ID=CGI_10026110; scaffold204 GLEAN promoter 476737 477736 1 + . ID=CGI_10026112; scaffold204 GLEAN mRNA 477157 477588 0.999984 - . ID=CGI_10026111; scaffold204 GLEAN promoter 477589 478588 0.999984 - . ID=CGI_10026111; scaffold204 GLEAN mRNA 477737 478671 1 + . ID=CGI_10026112; scaffold204 GLEAN promoter 477850 478849 1 + . ID=CGI_10026113; scaffold204 GLEAN mRNA 478850 479365 1 + . ID=CGI_10026113; scaffold204 GLEAN mRNA 481169 490959 0.999351 - . ID=CGI_10026114; scaffold204 TRF Tandem_Repeat 489039 489369 100 + . . scaffold204 TRF Tandem_Repeat 489039 489394 256 + . . scaffold204 TRF Tandem_Repeat 489063 489394 243 + . . scaffold204 GLEAN promoter 490960 491959 0.999351 - . ID=CGI_10026114; scaffold204 GLEAN mRNA 491072 501785 0.519605 - . ID=CGI_10026115; scaffold204 TRF Tandem_Repeat 499733 499763 62 + . . scaffold204 GLEAN promoter 501786 502785 0.519605 - . ID=CGI_10026115; scaffold204 TRF Tandem_Repeat 509401 509455 101 + . . scaffold204 TRF Tandem_Repeat 510783 510840 107 + . . scaffold204 GLEAN mRNA 515741 537407 1 - . ID=CGI_10026116; scaffold204 TRF Tandem_Repeat 519377 519674 463 + . . scaffold204 GLEAN promoter 537408 538407 1 - . ID=CGI_10026116; scaffold204 TRF Tandem_Repeat 550288 551209 1375 + . . scaffold204 GLEAN promoter 554644 555643 0.999351 + . ID=CGI_10026117; scaffold204 GLEAN mRNA 555644 562519 0.999351 + . ID=CGI_10026117; scaffold204 WUBlastX DNA_Crypton 561247 561351 22 + . . scaffold204 WUBlastX DNA_Crypton 561539 562402 153 + . . scaffold204 WUBlastX DNA_hAT-Ac 566878 567237 156 - . . scaffold204 TRF Tandem_Repeat 569778 569807 51 + . . scaffold204 TRF Tandem_Repeat 569818 570479 1080 + . . scaffold204 GLEAN promoter 572438 573437 0.209879 + . ID=CGI_10026118; scaffold204 GLEAN mRNA 573438 596887 0.209879 + . ID=CGI_10026118; scaffold204 WUBlastX DNA_TcMar-ISRm1 577442 577891 40 + . . scaffold204 TRF Tandem_Repeat 580322 580412 98 + . . scaffold204 TRF Tandem_Repeat 580650 580688 78 + . . scaffold204 WUBlastX DNA_Crypton 595826 596782 109 + . . scaffold204 GLEAN promoter 601391 602390 0.480742 + . ID=CGI_10026119; scaffold204 GLEAN mRNA 602391 618786 0.480742 + . ID=CGI_10026119; scaffold204 WUBlastX DNA_PiggyBac 609341 609628 23 + . . scaffold204 GLEAN mRNA 615161 632629 0.544727 - . ID=CGI_10026120; scaffold204 TRF Tandem_Repeat 626281 627054 1110 + . . scaffold204 GLEAN promoter 631848 632847 1 + . ID=CGI_10026121; scaffold204 GLEAN promoter 632630 633629 0.544727 - . ID=CGI_10026120; scaffold204 GLEAN mRNA 632848 639424 1 + . ID=CGI_10026121; scaffold204 WUBlastX LINE_L1-Tx1 638082 638684 43 - . . scaffold204 WUBlastX LINE_L1-Tx1 638346 638654 59 - . . scaffold204 GLEAN mRNA 643197 645841 1 - . ID=CGI_10026122; scaffold204 GLEAN promoter 645842 646841 1 - . ID=CGI_10026122; scaffold204 GLEAN mRNA 647652 653658 1 - . ID=CGI_10026123; scaffold204 TRF Tandem_Repeat 653523 653579 114 + . . scaffold204 GLEAN promoter 653659 654658 1 - . ID=CGI_10026123; scaffold204 TRF Tandem_Repeat 660263 660315 79 + . . scaffold204 TRF Tandem_Repeat 660824 660891 111 + . . scaffold204 GLEAN promoter 663290 664289 0.999415 + . ID=CGI_10026124; scaffold204 GLEAN mRNA 664290 666458 0.999415 + . ID=CGI_10026124; scaffold204 GLEAN mRNA 675487 684308 0.724851 - . ID=CGI_10026125; scaffold204 TRF Tandem_Repeat 683931 684009 149 + . . scaffold204 TRF Tandem_Repeat 684176 684223 55 + . . scaffold204 TRF Tandem_Repeat 684176 684223 61 + . . scaffold204 GLEAN promoter 684309 685308 0.724851 - . ID=CGI_10026125; scaffold204 TRF Tandem_Repeat 685775 685849 123 + . . scaffold204 GLEAN promoter 686602 687601 0.998862 + . ID=CGI_10026126; scaffold204 GLEAN mRNA 687602 698153 0.998862 + . ID=CGI_10026126; scaffold204 TRF Tandem_Repeat 697311 697528 147 + . . scaffold204 GLEAN promoter 699398 700397 0.999896 + . ID=CGI_10026127; scaffold204 GLEAN mRNA 700398 725619 0.999896 + . ID=CGI_10026127; scaffold204 TRF Tandem_Repeat 700938 700979 84 + . . scaffold204 TRF Tandem_Repeat 704025 704061 74 + . . scaffold204 TRF Tandem_Repeat 711622 711676 60 + . . scaffold204 TRF Tandem_Repeat 713051 713085 70 + . . scaffold204 TRF Tandem_Repeat 725945 725983 78 + . . scaffold204 WUBlastX LINE_RTE-X 727519 727707 78 - . . scaffold204 WUBlastX LINE_RTE-X 727573 727809 55 - . . scaffold204 GLEAN mRNA 730636 739345 0.681566 - . ID=CGI_10026128; scaffold204 GLEAN promoter 739346 740345 0.681566 - . ID=CGI_10026128; scaffold204 GLEAN mRNA 742139 745835 0.999999 - . ID=CGI_10026129; scaffold204 GLEAN promoter 745836 746835 0.999999 - . ID=CGI_10026129; scaffold204 TRF Tandem_Repeat 746258 746349 107 + . . scaffold204 TRF Tandem_Repeat 746426 746585 187 + . . scaffold204 TRF Tandem_Repeat 746815 746908 100 + . . scaffold204 WUBlastX LTR_Gypsy 754067 754096 21 + . . scaffold204 WUBlastX LTR_Gypsy 754422 754706 55 + . . scaffold204 WUBlastX LTR_Gypsy 754482 754673 78 + . . scaffold204 WUBlastX LTR_Gypsy 754512 756035 368 + . . scaffold204 GLEAN promoter 755228 756227 0.998101 + . ID=CGI_10026130; scaffold204 WUBlastX LTR_Gypsy 755901 756059 23 + . . scaffold204 GLEAN mRNA 756228 781709 0.998101 + . ID=CGI_10026130; scaffold204 TRF Tandem_Repeat 775334 775385 104 + . . scaffold204 GLEAN promoter 782216 783215 0.999993 + . ID=CGI_10026131; scaffold204 GLEAN mRNA 783216 787108 0.999993 + . ID=CGI_10026131; scaffold204 GLEAN promoter 789379 790378 1 + . ID=CGI_10026132; scaffold204 GLEAN mRNA 790379 791005 1 + . ID=CGI_10026132; scaffold204 GLEAN promoter 790423 791422 0.593391 + . ID=CGI_10026133; scaffold204 GLEAN mRNA 791423 793068 0.593391 + . ID=CGI_10026133; scaffold204 WUBlastX LTR_Gypsy 800334 800744 39 + . . scaffold204 WUBlastX LTR_Gypsy-Cigr 800403 800801 88 + . . scaffold204 WUBlastX LTR_Gypsy 800409 801095 76 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 802866 803072 33 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 802988 803899 169 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 803165 803887 169 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 803426 803899 186 + . . scaffold204 TRF Tandem_Repeat 807891 807924 68 + . . scaffold204 WUBlastX LINE_CR1 808045 808092 21 - . . scaffold204 WUBlastX LINE_CR1 808118 808195 20 - . . scaffold204 WUBlastX LINE_CR1 808212 808601 41 - . . scaffold204 WUBlastX LINE_CR1 808291 808491 48 - . . scaffold204 WUBlastX LINE_CR1 808336 808491 55 - . . scaffold204 WUBlastX LINE_CR1 808485 808601 56 - . . scaffold204 WUBlastX LTR_DIRS 809119 809685 135 + . . scaffold204 WUBlastX LTR_DIRS 809263 809688 237 + . . scaffold204 WUBlastX LTR_DIRS 809700 810050 138 + . . scaffold204 GLEAN promoter 814967 815966 0.552692 + . ID=CGI_10026134; scaffold204 GLEAN mRNA 815967 826283 0.552692 + . ID=CGI_10026134; scaffold204 TRF Tandem_Repeat 819949 819987 78 + . . scaffold204 TRF Tandem_Repeat 820110 820137 56 + . . scaffold204 TRF Tandem_Repeat 820137 820164 56 + . . scaffold204 WUBlastX LINE_L1-Tx1 821346 821411 27 - . . scaffold204 WUBlastX LINE_L1-Tx1 821427 821726 26 - . . scaffold204 WUBlastX LINE_L1-Tx1 821475 821819 44 - . . scaffold204 WUBlastX LINE_L1-Tx1 821955 822113 23 - . . scaffold204 WUBlastX LINE_L1-Tx1 822109 822399 69 - . . scaffold204 GLEAN promoter 832550 833549 0.757143 + . ID=CGI_10026135; scaffold204 GLEAN mRNA 833550 838755 0.757143 + . ID=CGI_10026135; scaffold204 TRF Tandem_Repeat 834607 834677 106 + . . scaffold204 TRF Tandem_Repeat 834608 834677 86 + . . scaffold204 TRF Tandem_Repeat 837984 838077 100 + . . scaffold204 GLEAN promoter 839254 840253 0.756652 + . ID=CGI_10026136; scaffold204 GLEAN mRNA 840254 857007 0.756652 + . ID=CGI_10026136; scaffold204 WUBlastX LINE_Penelope 842437 842769 47 + . . scaffold204 WUBlastX LINE_Penelope 842437 842658 70 + . . scaffold204 WUBlastX LINE_Penelope 842437 842715 58 + . . scaffold204 WUBlastX LINE_CR1 849759 850046 81 + . . scaffold204 WUBlastX LINE_CR1 849993 850058 30 + . . scaffold204 WUBlastX LINE_CR1 850064 850405 113 + . . scaffold204 WUBlastX DNA_Harbinger 850752 850844 52 + . . scaffold204 WUBlastX DNA_Harbinger 850982 851068 26 + . . scaffold204 WUBlastX DNA_Harbinger 851191 851376 89 + . . scaffold204 WUBlastX DNA_Kolobok-Hyd 853262 853729 28 - . . scaffold204 WUBlastX LINE_CR1 857211 857558 129 + . . scaffold204 WUBlastX LINE_CR1 857262 857639 88 + . . scaffold204 WUBlastX LINE_CR1 857271 857582 149 + . . scaffold204 WUBlastX LINE_CR1 857576 857713 85 + . . scaffold204 WUBlastX LINE_CR1 857728 857880 40 + . . scaffold204 WUBlastX LINE_CR1 857737 857865 50 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 858254 858568 48 + . . scaffold204 WUBlastX DNA_TcMar-Tc1 858772 858849 20 + . . scaffold204 TRF Tandem_Repeat 861260 861289 60 + . . scaffold204 WUBlastX LTR_Gypsy 865712 866008 42 - . . scaffold204 WUBlastX LINE_RTE-X 869230 869406 63 - . . scaffold204 WUBlastX LINE_RTE-X 869375 869917 110 - . . scaffold204 WUBlastX DNA_hAT-Tip100 870659 870973 131 - . . scaffold204 TRF Tandem_Repeat 882720 882753 68 + . . scaffold204 WUBlastX LTR_Gypsy 882900 883466 25 - . . scaffold204 WUBlastX LTR_Gypsy 883038 883487 90 - . . scaffold204 WUBlastX LTR_Gypsy 883086 883724 78 - . . scaffold204 WUBlastX LTR_Gypsy 885614 886882 560 + . . scaffold204 TRF Tandem_Repeat 907716 907803 117 + . . scaffold204 GLEAN promoter 909322 910321 0.530486 + . ID=CGI_10026137; scaffold204 GLEAN mRNA 910322 928819 0.530486 + . ID=CGI_10026137; scaffold204 TRF Tandem_Repeat 915167 915326 169 + . . scaffold204 TRF Tandem_Repeat 915397 915537 104 + . . scaffold204 TRF Tandem_Repeat 929640 929688 98 + . . scaffold204 WUBlastX LINE_RTE-X 930485 930703 32 + . . scaffold204 WUBlastX LINE_L1 930646 930948 38 + . . scaffold204 WUBlastX LINE_CR1 930712 930951 63 + . . scaffold204 WUBlastX LINE_RTE-X 930769 930957 102 + . . scaffold204 WUBlastX LINE_RTE-X 930951 932027 577 + . . scaffold204 WUBlastX LINE_L1 931935 932081 26 + . . scaffold204 TRF Tandem_Repeat 932829 932868 80 + . . scaffold204 TRF Tandem_Repeat 933155 933214 102 + . . scaffold204 GLEAN mRNA 934138 934900 0.847566 - . ID=CGI_10026138; scaffold204 GLEAN promoter 934901 935900 0.847566 - . ID=CGI_10026138; scaffold204 GLEAN promoter 935505 936504 0.911804 + . ID=CGI_10026139; scaffold204 TRF Tandem_Repeat 936422 936469 96 + . . scaffold204 GLEAN mRNA 936505 937175 0.911804 + . ID=CGI_10026139; scaffold204 WUBlastX DNA_Chapaev 936535 936741 24 + . . scaffold204 GLEAN promoter 939468 940467 0.913283 + . ID=CGI_10026140; scaffold204 GLEAN mRNA 940468 950941 0.913283 + . ID=CGI_10026140; scaffold204 WUBlastX DNA_Kolobok 955446 955946 115 + . . scaffold204 WUBlastX DNA_Kolobok 955650 955937 129 + . . scaffold204 WUBlastX DNA_Kolobok 956547 956933 77 + . . scaffold204 WUBlastX DNA_Kolobok 956547 956801 101 + . . scaffold204 WUBlastX DNA_Kolobok 956966 957115 42 + . . scaffold204 WUBlastX DNA_Kolobok 956996 957103 42 + . . scaffold204 WUBlastX DNA_Kolobok 957251 957418 37 + . . scaffold204 WUBlastX DNA_Kolobok 957257 957385 39 + . . scaffold204 TRF Tandem_Repeat 958752 958790 60 + . . scaffold204 GLEAN promoter 965889 966888 0.940726 + . ID=CGI_10026141; scaffold204 GLEAN mRNA 966889 970683 0.940726 + . ID=CGI_10026141; scaffold204 TRF Tandem_Repeat 967309 967352 61 + . . scaffold204 TRF Tandem_Repeat 967310 967359 55 + . . scaffold204 TRF Tandem_Repeat 967383 968508 1682 + . . scaffold204 GLEAN mRNA 981338 1035223 0.34759 - . ID=CGI_10026142; scaffold204 TRF Tandem_Repeat 997788 997817 51 + . . scaffold204 WUBlastX LINE_L1-Tx1 1010967 1011944 494 - . . scaffold204 WUBlastX LINE_I 1012266 1012313 21 - . . scaffold204 TRF Tandem_Repeat 1014944 1015024 155 + . . scaffold204 TRF Tandem_Repeat 1026201 1026251 102 + . . scaffold204 TRF Tandem_Repeat 1027123 1027185 126 + . . scaffold204 TRF Tandem_Repeat 1028602 1028643 50 + . . scaffold204 TRF Tandem_Repeat 1030577 1030642 132 + . . scaffold204 GLEAN promoter 1034665 1035664 0.88574 + . ID=CGI_10026143; scaffold204 GLEAN promoter 1035224 1036223 0.34759 - . ID=CGI_10026142; scaffold204 GLEAN mRNA 1035665 1042178 0.88574 + . ID=CGI_10026143; scaffold204 GLEAN mRNA 1048109 1061913 0.999012 - . ID=CGI_10026144; scaffold204 GLEAN promoter 1061914 1062913 0.999012 - . ID=CGI_10026144; scaffold204 GLEAN promoter 1064982 1065981 0.989758 + . ID=CGI_10026145; scaffold204 GLEAN mRNA 1065982 1072722 0.989758 + . ID=CGI_10026145; scaffold204 WUBlastX LINE_CR1 1077890 1078504 69 + . . scaffold204 WUBlastX LINE_CR1 1078310 1078507 92 + . . scaffold204 WUBlastX LINE_Rex-Babar 1078501 1078641 60 + . . scaffold204 WUBlastX LINE_CR1 1078519 1078629 68 + . . scaffold204 WUBlastX LINE_CR1 1078522 1078671 23 + . . scaffold204 WUBlastX LINE_CR1 1079118 1079990 287 + . . scaffold204 WUBlastX LINE_CR1 1079253 1080467 532 + . . scaffold204 WUBlastX LINE_CR1 1079253 1079999 582 + . . scaffold204 WUBlastX LINE_CR1 1080488 1080622 48 + . . scaffold204 WUBlastX LINE_RTE-BovB 1080925 1081023 24 + . . scaffold204 TRF Tandem_Repeat 1088515 1088590 62 + . . scaffold204 TRF Tandem_Repeat 1088556 1088703 73 + . . scaffold204 TRF Tandem_Repeat 1091534 1091576 52 + . . scaffold204 TRF Tandem_Repeat 1095793 1095838 92 + . . scaffold204 TRF Tandem_Repeat 1100248 1100409 236 + . . scaffold204 TRF Tandem_Repeat 1100441 1100593 114 + . . scaffold204 TRF Tandem_Repeat 1100453 1100578 126 + . . scaffold204 TRF Tandem_Repeat 1100562 1101193 1066 + . . scaffold204 WUBlastX LINE_L1-Tx1 1104771 1105106 59 - . . scaffold204 WUBlastX LINE_L1-Tx1 1105766 1106479 67 - . . scaffold204 WUBlastX LINE_L1-Tx1 1106039 1106293 77 - . . scaffold204 WUBlastX LINE_L1-Tx1 1106912 1107364 25 - . . scaffold204 WUBlastX LINE_L1-Tx1 1107035 1107304 53 - . . scaffold204 WUBlastX LINE_L1-Tx1 1107128 1107340 52 - . . scaffold204 WUBlastX LINE_L1-Tx1 1107128 1107304 56 - . . scaffold204 WUBlastX LINE_L1-Tx1 1110858 1110902 21 - . . scaffold204 WUBlastX LINE_L1-Tx1 1111703 1111795 45 - . . scaffold204 WUBlastX LINE_L1-Tx1 1111738 1111911 22 - . . scaffold204 WUBlastX LINE_L1 1111798 1111884 34 - . . scaffold204 TRF Tandem_Repeat 1111916 1111959 88 + . . scaffold204 WUBlastX LINE_L1-Tx1 1112075 1112458 66 - . . scaffold204 WUBlastX LTR_Gypsy 1112704 1112787 71 + . . scaffold204 WUBlastX LTR_Gypsy 1112769 1113905 484 + . . scaffold204 WUBlastX LTR_Gypsy 1113898 1114368 330 + . . scaffold204 WUBlastX LTR_Gypsy 1114203 1115552 1273 + . . scaffold204 WUBlastX LTR_Gypsy 1115555 1116163 507 + . . scaffold204 WUBlastX LTR_Gypsy 1115558 1116283 195 + . . scaffold204 WUBlastX LTR_Gypsy 1116108 1116488 132 + . . scaffold205 WUBlastX LTR_Gypsy 1 153 153 - . . scaffold205 TRF Tandem_Repeat 2582 2632 70 + . . scaffold205 TRF Tandem_Repeat 3029 3067 78 + . . scaffold205 TRF Tandem_Repeat 11472 11496 50 + . . scaffold205 TRF Tandem_Repeat 15144 15261 81 + . . scaffold205 TRF Tandem_Repeat 15144 15262 105 + . . scaffold205 TRF Tandem_Repeat 15157 15262 108 + . . scaffold205 WUBlastX LINE_L2 29410 29634 47 + . . scaffold205 WUBlastX LINE_L2 29635 29760 57 + . . scaffold205 WUBlastX LINE_L2 29754 29843 46 + . . scaffold206 TRF Tandem_Repeat 5671 5865 309 + . . scaffold206 TRF Tandem_Repeat 8206 8381 126 + . . scaffold206 TRF Tandem_Repeat 8206 8406 118 + . . scaffold206 TRF Tandem_Repeat 8590 8740 83 + . . scaffold206 WUBlastX DNA_Sola 18815 19378 24 + . . scaffold206 WUBlastX DNA_Sola 19106 19333 68 + . . scaffold206 WUBlastX DNA_Sola 19401 20195 209 + . . scaffold206 WUBlastX DNA_Sola 20687 20848 25 + . . scaffold206 TRF Tandem_Repeat 26886 28278 900 + . . scaffold206 GLEAN mRNA 50898 57086 1 - . ID=CGI_10011371; scaffold206 GLEAN promoter 56948 57947 0.702119 + . ID=CGI_10011372; scaffold206 GLEAN promoter 57087 58086 1 - . ID=CGI_10011371; scaffold206 GLEAN mRNA 57948 87960 0.702119 + . ID=CGI_10011372; scaffold206 TRF Tandem_Repeat 67616 67650 70 + . . scaffold206 TRF Tandem_Repeat 69409 69952 739 + . . scaffold206 WUBlastX LINE_RTE-X 70824 70871 26 + . . scaffold206 TRF Tandem_Repeat 76398 76728 311 + . . scaffold206 TRF Tandem_Repeat 76416 76665 182 + . . scaffold206 TRF Tandem_Repeat 78265 78478 170 + . . scaffold206 TRF Tandem_Repeat 78703 79244 426 + . . scaffold206 WUBlastX LTR_Gypsy 79716 79805 22 + . . scaffold206 WUBlastX LTR_Gypsy 80148 80603 129 + . . scaffold206 WUBlastX LTR_Gypsy 80238 81962 710 + . . scaffold206 WUBlastX LTR_Gypsy 81372 82139 236 + . . scaffold206 TRF Tandem_Repeat 90996 91041 92 + . . scaffold206 TRF Tandem_Repeat 92225 92280 112 + . . scaffold206 TRF Tandem_Repeat 93039 93073 70 + . . scaffold206 TRF Tandem_Repeat 97214 97256 86 + . . scaffold206 GLEAN mRNA 110923 118881 0.999996 - . ID=CGI_10011373; scaffold206 TRF Tandem_Repeat 113404 113803 277 + . . scaffold206 TRF Tandem_Repeat 113574 113763 118 + . . scaffold206 GLEAN promoter 118882 119881 0.999996 - . ID=CGI_10011373; scaffold206 GLEAN mRNA 123903 131741 0.999975 - . ID=CGI_10011374; scaffold206 WUBlastX DNA_En-Spm 128057 128494 57 - . . scaffold206 WUBlastX DNA_En-Spm 128162 128464 78 - . . scaffold206 WUBlastX DNA_En-Spm 128213 128449 78 - . . scaffold206 WUBlastX DNA_En-Spm 128485 128706 95 - . . scaffold206 TRF Tandem_Repeat 131337 131406 140 + . . scaffold206 GLEAN promoter 131742 132741 0.999975 - . ID=CGI_10011374; scaffold206 TRF Tandem_Repeat 132074 132139 132 + . . scaffold206 TRF Tandem_Repeat 134021 134099 149 + . . scaffold206 GLEAN mRNA 142990 143532 0.999661 - . ID=CGI_10011375; scaffold206 GLEAN promoter 143533 144532 0.999661 - . ID=CGI_10011375; scaffold206 TRF Tandem_Repeat 146558 146604 94 + . . scaffold206 TRF Tandem_Repeat 148816 148854 71 + . . scaffold206 WUBlastX LINE_RTE-X 149265 149822 148 + . . scaffold206 WUBlastX LINE_RTE-X 149265 149951 117 + . . scaffold206 GLEAN mRNA 152090 152599 0.999999 - . ID=CGI_10011376; scaffold206 GLEAN promoter 152600 153599 0.999999 - . ID=CGI_10011376; scaffold206 WUBlastX DNA_TcMar-Tc1 156503 156811 196 + . . scaffold206 GLEAN promoter 160681 161680 0.999949 + . ID=CGI_10011377; scaffold206 GLEAN mRNA 161681 172675 0.999949 + . ID=CGI_10011377; scaffold206 TRF Tandem_Repeat 163134 163169 54 + . . scaffold206 GLEAN promoter 174426 175425 0.996212 + . ID=CGI_10011378; scaffold206 GLEAN mRNA 175426 179814 0.996212 + . ID=CGI_10011378; scaffold206 TRF Tandem_Repeat 179562 179620 109 + . . scaffold206 GLEAN mRNA 180394 182705 0.998688 - . ID=CGI_10011379; scaffold206 WUBlastX LTR_ERV1 182142 182588 52 - . . scaffold206 GLEAN promoter 182563 183562 0.531008 + . ID=CGI_10011380; scaffold206 GLEAN promoter 182706 183705 0.998688 - . ID=CGI_10011379; scaffold206 GLEAN mRNA 183563 198986 0.531008 + . ID=CGI_10011380; scaffold206 TRF Tandem_Repeat 190179 190207 58 + . . scaffold206 TRF Tandem_Repeat 197520 197725 300 + . . scaffold206 TRF Tandem_Repeat 199124 199164 82 + . . scaffold206 GLEAN mRNA 209729 223098 0.999647 - . ID=CGI_10011381; scaffold206 TRF Tandem_Repeat 210689 210749 77 + . . scaffold206 GLEAN promoter 223099 224098 0.999647 - . ID=CGI_10011381; scaffold206 GLEAN mRNA 224069 234323 0.832936 - . ID=CGI_10011382; scaffold206 GLEAN promoter 234324 235323 0.832936 - . ID=CGI_10011382; scaffold206 GLEAN promoter 238501 239500 0.979857 + . ID=CGI_10011383; scaffold206 GLEAN mRNA 239501 247016 0.979857 + . ID=CGI_10011383; scaffold206 WUBlastX LTR_Ngaro 250838 251272 316 - . . scaffold206 WUBlastX LTR_Ngaro 251428 252024 136 - . . scaffold206 WUBlastX LTR_Ngaro 251599 252087 249 - . . scaffold206 WUBlastX LTR_Ngaro 251623 252252 201 - . . scaffold206 GLEAN promoter 253272 254271 0.999855 + . ID=CGI_10011384; scaffold206 GLEAN mRNA 254272 259364 0.999855 + . ID=CGI_10011384; scaffold206 GLEAN promoter 263085 264084 1 + . ID=CGI_10011385; scaffold206 GLEAN mRNA 264085 264732 1 + . ID=CGI_10011385; scaffold206 WUBlastX LINE_L1 271183 271854 108 - . . scaffold206 WUBlastX LINE_L1-Tx1 271348 271857 162 - . . scaffold206 WUBlastX LINE_L1-Tx1 271812 272039 108 - . . scaffold206 WUBlastX LINE_L1 271938 272060 32 - . . scaffold206 GLEAN promoter 274625 275624 1 + . ID=CGI_10011386; scaffold206 WUBlastX LINE_RTE-X 274682 275104 52 - . . scaffold206 WUBlastX LINE_RTE-X 274766 275128 122 - . . scaffold206 WUBlastX LINE_RTE-X 274841 275128 135 - . . scaffold206 GLEAN mRNA 275625 275987 1 + . ID=CGI_10011386; scaffold206 GLEAN promoter 282273 283272 0.922033 + . ID=CGI_10011387; scaffold206 GLEAN mRNA 283273 283659 0.922033 + . ID=CGI_10011387; scaffold206 WUBlastX LINE_RTE-X 286773 287072 71 - . . scaffold206 WUBlastX LINE_RTE-X 286890 287057 88 - . . scaffold206 WUBlastX LINE_RTE-X 287066 287548 51 - . . scaffold206 WUBlastX LINE_RTE-X 287066 287464 92 - . . scaffold207 GLEAN mRNA 2780 4317 0.546681 - . ID=CGI_10001600; scaffold207 GLEAN promoter 4318 5317 0.546681 - . ID=CGI_10001600; scaffold207 TRF Tandem_Repeat 10841 10882 84 + . . scaffold207 GLEAN promoter 10859 11858 0.651135 + . ID=CGI_10001601; scaffold207 TRF Tandem_Repeat 11110 11152 86 + . . scaffold207 GLEAN mRNA 11859 12622 0.651135 + . ID=CGI_10001601; scaffold207 TRF Tandem_Repeat 15792 15861 85 + . . scaffold207 TRF Tandem_Repeat 15792 15861 74 + . . scaffold207 WUBlastX LINE_L1-Tx1 20315 20797 114 - . . scaffold207 WUBlastX DNA_Kolobok-IS4 23384 23902 89 - . . scaffold207 WUBlastX LTR_Gypsy 24680 25258 50 + . . scaffold207 WUBlastX LTR_Gypsy 25351 25677 74 + . . scaffold207 WUBlastX LTR_Gypsy 25649 26059 40 + . . scaffold207 WUBlastX LTR_Gypsy 26318 26440 24 + . . scaffold207 WUBlastX LTR_Gypsy-Cigr 26779 27519 271 + . . scaffold207 WUBlastX LTR_Gypsy 26902 27519 412 + . . scaffold208 GLEAN promoter 5922 6921 1 + . ID=CGI_10010019; scaffold208 GLEAN mRNA 6922 12436 1 + . ID=CGI_10010019; scaffold208 TRF Tandem_Repeat 8114 8166 106 + . . scaffold208 TRF Tandem_Repeat 8898 8925 56 + . . scaffold208 TRF Tandem_Repeat 18577 18617 73 + . . scaffold208 WUBlastX LINE_RTE-BovB 22862 23314 322 + . . scaffold208 WUBlastX LINE_RTE-BovB 22913 23425 248 + . . scaffold208 WUBlastX DNA_TcMar-Marin 32240 32881 64 - . . scaffold208 WUBlastX LINE_RTE-BovB 33007 33117 73 + . . scaffold208 WUBlastX LINE_RTE-BovB 33052 33117 73 + . . scaffold208 WUBlastX LINE_RTE-BovB 33125 33193 54 + . . scaffold208 WUBlastX LINE_RTE-BovB 33165 33368 210 + . . scaffold208 WUBlastX LINE_RTE-BovB 33368 34027 169 + . . scaffold208 WUBlastX LINE_RTE-BovB 33669 33935 193 + . . scaffold208 TRF Tandem_Repeat 38872 38917 92 + . . scaffold208 TRF Tandem_Repeat 42318 42362 90 + . . scaffold208 TRF Tandem_Repeat 42913 42960 96 + . . scaffold208 TRF Tandem_Repeat 49473 49507 70 + . . scaffold208 TRF Tandem_Repeat 50163 50207 90 + . . scaffold208 WUBlastX LTR_DIRS 50930 51184 54 + . . scaffold208 WUBlastX LTR_DIRS 51739 51930 52 + . . scaffold208 GLEAN promoter 62051 63050 0.866571 + . ID=CGI_10010020; scaffold208 GLEAN mRNA 63051 68519 0.866571 + . ID=CGI_10010020; scaffold208 GLEAN mRNA 69568 73035 1 - . ID=CGI_10010021; scaffold208 GLEAN promoter 73036 74035 1 - . ID=CGI_10010021; scaffold208 GLEAN mRNA 75431 82779 0.999999 - . ID=CGI_10010022; scaffold208 TRF Tandem_Repeat 82048 82085 76 + . . scaffold208 GLEAN promoter 82780 83779 0.999999 - . ID=CGI_10010022; scaffold208 GLEAN mRNA 86523 94943 0.999949 - . ID=CGI_10010023; scaffold208 TRF Tandem_Repeat 92151 92177 54 + . . scaffold208 GLEAN promoter 94944 95943 0.999949 - . ID=CGI_10010023; scaffold208 GLEAN mRNA 97432 105247 1 - . ID=CGI_10010024; scaffold208 TRF Tandem_Repeat 98606 98646 82 + . . scaffold208 TRF Tandem_Repeat 100716 101148 201 + . . scaffold208 TRF Tandem_Repeat 100716 100937 195 + . . scaffold208 TRF Tandem_Repeat 100933 101148 108 + . . scaffold208 TRF Tandem_Repeat 104522 104552 62 + . . scaffold208 TRF Tandem_Repeat 104755 104820 132 + . . scaffold208 GLEAN promoter 105248 106247 1 - . ID=CGI_10010024; scaffold208 GLEAN mRNA 112278 113667 1 - . ID=CGI_10010025; scaffold208 GLEAN promoter 113668 114667 1 - . ID=CGI_10010025; scaffold208 TRF Tandem_Repeat 114024 114086 81 + . . scaffold208 GLEAN mRNA 115161 117315 1 - . ID=CGI_10010026; scaffold208 WUBlastX DNA_TcMar-Marin 116088 116228 31 + . . scaffold208 WUBlastX DNA_TcMar-Marin 116088 116267 28 + . . scaffold208 GLEAN promoter 117316 118315 1 - . ID=CGI_10010026; scaffold208 TRF Tandem_Repeat 118558 118606 98 + . . scaffold208 GLEAN mRNA 121781 129238 1 - . ID=CGI_10010027; scaffold208 WUBlastX DNA_TcMar-Marin 122684 122902 20 + . . scaffold208 GLEAN promoter 129239 130238 1 - . ID=CGI_10010027; scaffold208 GLEAN mRNA 130974 136374 1 - . ID=CGI_10010028; scaffold208 GLEAN promoter 136375 137374 1 - . ID=CGI_10010028; scaffold208 TRF Tandem_Repeat 144065 144109 90 + . . scaffold208 GLEAN mRNA 149987 152457 0.989551 - . ID=CGI_10010029; scaffold208 GLEAN promoter 152458 153457 0.989551 - . ID=CGI_10010029; scaffold208 GLEAN mRNA 154442 164706 0.999676 - . ID=CGI_10010030; scaffold208 GLEAN promoter 162267 163266 0.625774 + . ID=CGI_10010031; scaffold208 GLEAN mRNA 163267 168868 0.625774 + . ID=CGI_10010031; scaffold208 GLEAN promoter 164707 165706 0.999676 - . ID=CGI_10010030; scaffold208 WUBlastX LINE_CR1-L2 171677 171946 130 - . . scaffold208 WUBlastX LINE_CR1 171683 172000 51 - . . scaffold208 WUBlastX LINE_L2 172024 172227 58 - . . scaffold208 WUBlastX LINE_L2 172928 173602 130 - . . scaffold208 WUBlastX LINE_CR1-L2 172982 173539 163 - . . scaffold208 WUBlastX LINE_L1 173027 173872 27 - . . scaffold208 WUBlastX LINE_L1 173102 173713 29 - . . scaffold208 GLEAN promoter 176565 177564 0.412708 + . ID=CGI_10010032; scaffold208 GLEAN mRNA 177565 177915 0.412708 + . ID=CGI_10010032; scaffold208 GLEAN mRNA 179325 181456 0.999817 - . ID=CGI_10010033; scaffold208 GLEAN promoter 181457 182456 0.999817 - . ID=CGI_10010033; scaffold208 TRF Tandem_Repeat 181548 181604 114 + . . scaffold208 WUBlastX LINE_RTE-X 200906 201391 113 - . . scaffold208 WUBlastX LINE_RTE-X 200993 201376 142 - . . scaffold208 WUBlastX LINE_RTE-X 201372 201902 236 - . . scaffold208 WUBlastX LINE_RTE-X 201880 202986 232 - . . scaffold208 WUBlastX LINE_RTE-X 203001 203846 26 - . . scaffold208 WUBlastX LINE_RTE-X 203442 203687 28 - . . scaffold208 WUBlastX LINE_RTE-X 203833 204231 108 - . . scaffold208 TRF Tandem_Repeat 206528 207309 561 + . . scaffold208 GLEAN mRNA 214456 243221 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 215036 215078 50 + . . scaffold208 TRF Tandem_Repeat 216102 216141 80 + . . scaffold208 TRF Tandem_Repeat 220214 220262 98 + . . scaffold208 GLEAN promoter 221302 222301 1 + . ID=CGI_10010035; scaffold208 GLEAN mRNA 222302 222526 1 + . ID=CGI_10010035; scaffold208 TRF Tandem_Repeat 228814 229303 362 + . . scaffold208 TRF Tandem_Repeat 228814 229014 276 + . . scaffold208 TRF Tandem_Repeat 228826 229337 390 + . . scaffold208 TRF Tandem_Repeat 229100 229344 220 + . . scaffold208 TRF Tandem_Repeat 236573 236615 50 + . . scaffold208 GLEAN promoter 243222 244221 0.89947 - . ID=CGI_10010034; scaffold208 TRF Tandem_Repeat 245455 245513 64 + . . scaffold208 GLEAN mRNA 249852 250900 0.999212 - . ID=CGI_10010036; scaffold208 GLEAN promoter 250901 251644 0.999212 - . ID=CGI_10010036; scaffold208 TRF Tandem_Repeat 251200 251390 192 + . . scaffold209 TRF Tandem_Repeat 95 369 248 + . . scaffold209 TRF Tandem_Repeat 111 369 202 + . . scaffold209 TRF Tandem_Repeat 3901 4112 171 + . . scaffold209 TRF Tandem_Repeat 3901 4112 155 + . . scaffold209 TRF Tandem_Repeat 5165 5295 262 + . . scaffold209 TRF Tandem_Repeat 5638 5690 88 + . . scaffold209 GLEAN mRNA 6348 7825 1 - . ID=CGI_10013480; scaffold209 GLEAN promoter 7826 8825 1 - . ID=CGI_10013480; scaffold209 WUBlastX LINE_L2 9716 9913 78 + . . scaffold209 TRF Tandem_Repeat 13683 14569 167 + . . scaffold209 TRF Tandem_Repeat 13688 14571 450 + . . scaffold209 TRF Tandem_Repeat 13796 14389 228 + . . scaffold209 TRF Tandem_Repeat 16613 18397 2335 + . . scaffold209 TRF Tandem_Repeat 20727 21215 486 + . . scaffold209 WUBlastX LINE_L1-Tx1 33018 34598 208 - . . scaffold209 WUBlastX LINE_L1-Tx1 34199 35170 340 - . . scaffold209 WUBlastX LINE_L1-Tx1 34589 35170 363 - . . scaffold209 WUBlastX LINE_L1-Tx1 35158 36186 336 - . . scaffold209 WUBlastX LINE_L1-Tx1 35173 35958 344 - . . scaffold209 WUBlastX LINE_L1-Tx1 36155 36652 234 - . . scaffold209 TRF Tandem_Repeat 60886 60935 55 + . . scaffold209 TRF Tandem_Repeat 62976 63007 64 + . . scaffold209 TRF Tandem_Repeat 64446 64485 62 + . . scaffold209 TRF Tandem_Repeat 68040 68074 61 + . . scaffold209 WUBlastX LINE_L2 76383 76913 207 - . . scaffold209 WUBlastX LINE_CR1 77993 78145 23 + . . scaffold209 WUBlastX LINE_CR1 78153 78569 79 + . . scaffold209 WUBlastX LINE_CR1 78153 78476 145 + . . scaffold209 GLEAN promoter 78980 79979 0.534711 + . ID=CGI_10013481; scaffold209 GLEAN mRNA 79980 140319 0.534711 + . ID=CGI_10013481; scaffold209 TRF Tandem_Repeat 83370 85577 3242 + . . scaffold209 TRF Tandem_Repeat 85930 86375 278 + . . scaffold209 TRF Tandem_Repeat 85961 86369 258 + . . scaffold209 TRF Tandem_Repeat 88206 88370 172 + . . scaffold209 TRF Tandem_Repeat 89438 90001 669 + . . scaffold209 TRF Tandem_Repeat 94809 95054 233 + . . scaffold209 TRF Tandem_Repeat 98645 99124 708 + . . scaffold209 GLEAN mRNA 102353 123865 0.996774 - . ID=CGI_10013482; scaffold209 TRF Tandem_Repeat 104541 107188 3875 + . . scaffold209 TRF Tandem_Repeat 119155 119233 95 + . . scaffold209 GLEAN promoter 123866 124865 0.996774 - . ID=CGI_10013482; scaffold209 TRF Tandem_Repeat 123877 124206 349 + . . scaffold209 TRF Tandem_Repeat 127355 127538 278 + . . scaffold209 TRF Tandem_Repeat 127550 128231 743 + . . scaffold209 TRF Tandem_Repeat 132226 132801 881 + . . scaffold209 TRF Tandem_Repeat 134970 135165 223 + . . scaffold209 TRF Tandem_Repeat 135977 136241 331 + . . scaffold209 TRF Tandem_Repeat 136322 136892 801 + . . scaffold209 TRF Tandem_Repeat 141784 141812 58 + . . scaffold209 WUBlastX LINE_L1-Tx1 142623 142856 23 - . . scaffold209 WUBlastX LINE_L1-Tx1 143135 143251 30 - . . scaffold209 GLEAN mRNA 145489 153985 0.999936 - . ID=CGI_10013483; scaffold209 TRF Tandem_Repeat 146154 146953 1351 + . . scaffold209 TRF Tandem_Repeat 146332 146559 102 + . . scaffold209 GLEAN promoter 153986 154985 0.999936 - . ID=CGI_10013483; scaffold209 GLEAN mRNA 157970 158968 0.999984 - . ID=CGI_10013484; scaffold209 GLEAN promoter 158969 159968 0.999984 - . ID=CGI_10013484; scaffold209 TRF Tandem_Repeat 160023 160101 122 + . . scaffold209 GLEAN promoter 160957 161956 1 + . ID=CGI_10013485; scaffold209 GLEAN mRNA 161957 167197 1 + . ID=CGI_10013485; scaffold209 TRF Tandem_Repeat 163995 164443 156 + . . scaffold209 TRF Tandem_Repeat 164067 164456 458 + . . scaffold209 GLEAN promoter 166311 167310 1 + . ID=CGI_10013486; scaffold209 GLEAN mRNA 167311 171024 1 + . ID=CGI_10013486; scaffold209 TRF Tandem_Repeat 169421 170089 839 + . . scaffold209 GLEAN mRNA 172570 173064 0.999372 - . ID=CGI_10013487; scaffold209 GLEAN promoter 173065 174064 0.999372 - . ID=CGI_10013487; scaffold209 GLEAN promoter 175270 176269 0.999987 + . ID=CGI_10013489; scaffold209 GLEAN mRNA 175274 175813 0.612723 - . ID=CGI_10013488; scaffold209 GLEAN promoter 175814 176813 0.612723 - . ID=CGI_10013488; scaffold209 GLEAN mRNA 176270 180624 0.999987 + . ID=CGI_10013489; scaffold209 TRF Tandem_Repeat 178244 178291 96 + . . scaffold209 GLEAN mRNA 180884 203269 0.99166 - . ID=CGI_10013490; scaffold209 TRF Tandem_Repeat 181680 183725 2579 + . . scaffold209 TRF Tandem_Repeat 190856 191304 390 + . . scaffold209 TRF Tandem_Repeat 193862 193916 110 + . . scaffold209 TRF Tandem_Repeat 201237 202235 1226 + . . scaffold209 GLEAN promoter 201772 202771 0.996788 + . ID=CGI_10013491; scaffold209 GLEAN mRNA 202772 203194 0.996788 + . ID=CGI_10013491; scaffold209 GLEAN promoter 203270 204269 0.99166 - . ID=CGI_10013490; scaffold209 WUBlastX LINE_Penelope 204550 205086 106 - . . scaffold209 WUBlastX LTR_DIRS 205412 205570 37 - . . scaffold209 WUBlastX LTR_DIRS 205579 205782 52 - . . scaffold209 WUBlastX LTR_Ngaro 205750 206010 78 + . . scaffold209 WUBlastX LTR_Ngaro 205840 206010 94 + . . scaffold209 WUBlastX LTR_Ngaro 206516 206734 44 + . . scaffold209 WUBlastX LTR_Ngaro 206525 206650 51 + . . scaffold209 TRF Tandem_Repeat 209113 209137 50 + . . scaffold209 WUBlastX LTR_Pao 211325 212788 1304 - . . scaffold209 WUBlastX LTR_Pao 212809 213582 617 - . . scaffold209 WUBlastX LTR_Pao 213582 214592 1003 - . . scaffold209 WUBlastX LTR_Pao 214586 215941 745 - . . scaffold209 WUBlastX LTR_Pao 215949 216965 254 - . . scaffold209 WUBlastX LTR_Pao 215952 217406 149 - . . scaffold209 WUBlastX LTR_Pao 215952 217175 153 - . . scaffold209 TRF Tandem_Repeat 218304 218342 78 + . . scaffold209 GLEAN promoter 228667 229666 0.405449 + . ID=CGI_10013492; scaffold209 WUBlastX LTR_Pao 228915 229103 37 + . . scaffold209 WUBlastX LTR_Pao 228972 229103 43 + . . scaffold209 GLEAN mRNA 229667 262245 0.405449 + . ID=CGI_10013492; scaffold209 TRF Tandem_Repeat 230977 231634 538 + . . scaffold209 TRF Tandem_Repeat 249233 249262 60 + . . scaffold209 WUBlastX LTR_DIRS 250370 250819 145 + . . scaffold209 WUBlastX LTR_DIRS 250810 251283 149 + . . scaffold209 WUBlastX LTR_DIRS 251253 251363 67 + . . scaffold209 WUBlastX LTR_Pao 251350 251964 516 + . . scaffold209 TRF Tandem_Repeat 251992 252048 53 + . . scaffold209 WUBlastX LTR_DIRS 252893 253183 34 + . . scaffold209 WUBlastX LTR_DIRS 252999 253778 119 + . . scaffold209 WUBlastX LTR_DIRS 253767 254000 110 + . . scaffold209 WUBlastX LTR_DIRS 254000 254143 33 + . . scaffold209 WUBlastX LTR_DIRS 254266 254964 251 + . . scaffold209 TRF Tandem_Repeat 255238 256382 1116 + . . scaffold209 WUBlastX LTR_DIRS 256723 256818 29 + . . scaffold209 WUBlastX LTR_DIRS 256821 256901 48 + . . scaffold209 TRF Tandem_Repeat 258297 258324 56 + . . scaffold209 WUBlastX DNA_hAT-Tip100 258410 258613 40 - . . scaffold209 WUBlastX DNA_hAT-Tip100 258595 258627 21 - . . scaffold209 WUBlastX DNA_hAT-Tip100 258658 258852 56 - . . scaffold209 WUBlastX DNA_hAT-Charlie 258759 259085 92 - . . scaffold209 WUBlastX DNA_hAT-Tip100 258852 259121 134 - . . scaffold209 WUBlastX DNA_hAT-Tip100 259298 259972 44 - . . scaffold209 WUBlastX DNA_hAT-Tip100 259313 259774 214 - . . scaffold209 WUBlastX DNA_hAT-Tip100 259352 259861 178 - . . scaffold209 WUBlastX DNA_TcMar-Tc1 261392 261778 120 + . . scaffold209 WUBlastX DNA_TcMar-Tc1 261772 262296 146 + . . scaffold209 WUBlastX DNA_TcMar-Tc1 261775 262212 313 + . . scaffold209 WUBlastX LINE_L1-Tx1 271471 272010 23 - . . scaffold209 WUBlastX LINE_L1-Tx1 271687 271887 26 - . . scaffold209 WUBlastX LTR_Gypsy 273262 273465 23 - . . scaffold209 WUBlastX LTR_Gypsy-Cigr 273298 274371 182 - . . scaffold209 WUBlastX LTR_Gypsy 274150 274494 41 - . . scaffold209 WUBlastX DNA_TcMar-Tc1 289239 289655 102 - . . scaffold209 WUBlastX DNA_TcMar-Tc1 289239 289559 102 - . . scaffold209 WUBlastX DNA_TcMar-Tc1 289640 289972 109 - . . scaffold209 WUBlastX DNA_TcMar-Tc1 289670 290191 45 - . . scaffold209 TRF Tandem_Repeat 302362 302398 65 + . . scaffold209 TRF Tandem_Repeat 306490 306514 50 + . . scaffold209 TRF Tandem_Repeat 308970 310645 1936 + . . scaffold209 TRF Tandem_Repeat 311618 311669 68 + . . scaffold209 TRF Tandem_Repeat 312833 312884 86 + . . scaffold209 TRF Tandem_Repeat 312833 312892 75 + . . scaffold209 TRF Tandem_Repeat 312842 312893 77 + . . scaffold209 TRF Tandem_Repeat 313732 313798 102 + . . scaffold209 WUBlastX LINE_L1-Tx1 335684 336337 66 + . . scaffold209 WUBlastX LINE_L1 335786 337525 325 + . . scaffold209 WUBlastX LINE_L1-Tx1 336176 337516 445 + . . scaffold209 WUBlastX LINE_L1-Tx1 336419 337525 624 + . . scaffold209 WUBlastX LINE_L1-Tx1 337527 338720 191 + . . scaffold209 WUBlastX LINE_L1-Tx1 337539 338462 220 + . . scaffold209 TRF Tandem_Repeat 344125 344176 59 + . . scaffold209 TRF Tandem_Repeat 344126 344171 65 + . . scaffold209 TRF Tandem_Repeat 352345 352380 72 + . . scaffold21 WUBlastX LINE_L1 484 1158 82 + . . scaffold21 WUBlastX LINE_L1-Tx1 613 1332 185 + . . scaffold21 WUBlastX LINE_L1 697 1245 206 + . . scaffold21 TRF Tandem_Repeat 3023 3190 178 + . . scaffold21 TRF Tandem_Repeat 3474 3509 72 + . . scaffold21 WUBlastX LTR_Gypsy 5599 6123 73 - . . scaffold21 WUBlastX LTR_Gypsy 5692 6144 110 - . . scaffold21 WUBlastX LTR_Gypsy 9950 10453 99 - . . scaffold21 WUBlastX LTR_Gypsy 10034 10453 105 - . . scaffold21 WUBlastX LTR_Gypsy 10437 11351 257 - . . scaffold21 WUBlastX LTR_Gypsy 10626 12242 689 - . . scaffold21 WUBlastX LTR_Gypsy 10962 13055 741 - . . scaffold21 WUBlastX LTR_Gypsy 10998 13499 499 - . . scaffold21 WUBlastX LTR_Gypsy 12915 13622 43 - . . scaffold21 WUBlastX LTR_Gypsy 13362 13796 26 - . . scaffold21 WUBlastX LTR_Copia 13566 13943 22 - . . scaffold21 WUBlastX LTR_Gypsy 14224 14265 21 - . . scaffold21 WUBlastX LINE_I 16934 17278 28 - . . scaffold21 WUBlastX LINE_RTE-BovB 17240 18754 1362 - . . scaffold210 GLEAN promoter 1974 2973 1 + . ID=CGI_10015876; scaffold210 GLEAN mRNA 2974 20893 1 + . ID=CGI_10015876; scaffold210 GLEAN mRNA 23834 25312 0.998638 - . ID=CGI_10015877; scaffold210 GLEAN promoter 25313 26312 0.998638 - . ID=CGI_10015877; scaffold210 GLEAN mRNA 26553 27197 0.986676 - . ID=CGI_10015878; scaffold210 GLEAN promoter 27198 28197 0.986676 - . ID=CGI_10015878; scaffold210 GLEAN mRNA 31274 33893 1 - . ID=CGI_10015879; scaffold210 GLEAN promoter 33894 34893 1 - . ID=CGI_10015879; scaffold210 TRF Tandem_Repeat 36869 36901 57 + . . scaffold210 TRF Tandem_Repeat 40844 40953 98 + . . scaffold210 TRF Tandem_Repeat 40862 41192 403 + . . scaffold210 TRF Tandem_Repeat 45069 45120 104 + . . scaffold210 GLEAN promoter 46465 47464 0.558382 + . ID=CGI_10015880; scaffold210 GLEAN mRNA 47465 48722 0.558382 + . ID=CGI_10015880; scaffold210 GLEAN promoter 62988 63987 0.999949 + . ID=CGI_10015881; scaffold210 GLEAN mRNA 63988 69457 0.999949 + . ID=CGI_10015881; scaffold210 GLEAN promoter 71186 72185 1 + . ID=CGI_10015882; scaffold210 GLEAN mRNA 72186 87908 1 + . ID=CGI_10015882; scaffold210 TRF Tandem_Repeat 86100 86148 98 + . . scaffold210 TRF Tandem_Repeat 89143 89196 58 + . . scaffold210 TRF Tandem_Repeat 89148 89193 58 + . . scaffold210 TRF Tandem_Repeat 103733 103789 89 + . . scaffold210 TRF Tandem_Repeat 103947 103982 72 + . . scaffold210 TRF Tandem_Repeat 104337 104389 106 + . . scaffold210 TRF Tandem_Repeat 104539 104596 116 + . . scaffold210 TRF Tandem_Repeat 105285 105375 173 + . . scaffold210 WUBlastX LINE_L1-Tx1 108662 112426 1856 + . . scaffold210 TRF Tandem_Repeat 118765 118796 64 + . . scaffold210 WUBlastX LTR_Pao 122511 122915 20 + . . scaffold210 WUBlastX LTR_Pao 122580 126785 1137 + . . scaffold210 WUBlastX LTR_Pao 123258 126791 2073 + . . scaffold210 WUBlastX LTR_Pao 126784 127713 929 + . . scaffold210 TRF Tandem_Repeat 129417 130158 1001 + . . scaffold210 GLEAN mRNA 130765 152251 0.999676 - . ID=CGI_10015883; scaffold210 WUBlastX LINE_RTE-X 141237 141650 72 + . . scaffold210 WUBlastX LINE_RTE-X 141330 141659 157 + . . scaffold210 WUBlastX LINE_I 141360 141755 68 + . . scaffold210 WUBlastX LINE_RTE-X 141722 142165 143 + . . scaffold210 WUBlastX LINE_RTE-X 141794 142114 153 + . . scaffold210 WUBlastX LINE_L2 142425 142931 170 - . . scaffold210 WUBlastX LINE_L2 144683 146959 1260 - . . scaffold210 WUBlastX LINE_RTE-X 148113 148220 47 + . . scaffold210 WUBlastX LINE_RTE-X 148291 148890 35 + . . scaffold210 WUBlastX LINE_RTE-X 148390 148917 81 + . . scaffold210 WUBlastX LINE_RTE-X 148390 148797 106 + . . scaffold210 GLEAN promoter 152252 153251 0.999676 - . ID=CGI_10015883; scaffold210 GLEAN promoter 152569 153568 1 + . ID=CGI_10015884; scaffold210 GLEAN mRNA 153569 155422 1 + . ID=CGI_10015884; scaffold210 GLEAN promoter 164144 165143 0.999175 + . ID=CGI_10015885; scaffold210 GLEAN mRNA 165144 171025 0.999175 + . ID=CGI_10015885; scaffold210 GLEAN mRNA 170456 181465 0.999676 - . ID=CGI_10015886; scaffold210 GLEAN promoter 181466 182465 0.999676 - . ID=CGI_10015886; scaffold210 GLEAN promoter 181748 182747 0.676627 + . ID=CGI_10015887; scaffold210 GLEAN mRNA 182748 205163 0.676627 + . ID=CGI_10015887; scaffold210 TRF Tandem_Repeat 194724 195221 614 + . . scaffold210 TRF Tandem_Repeat 198240 199331 1591 + . . scaffold210 WUBlastX LINE_RTE-BovB 213672 214199 45 + . . scaffold210 WUBlastX LINE_RTE-X 213765 215024 434 + . . scaffold210 TRF Tandem_Repeat 215685 215782 94 + . . scaffold210 GLEAN promoter 217512 218511 1 + . ID=CGI_10015888; scaffold210 GLEAN mRNA 218512 221845 1 + . ID=CGI_10015888; scaffold210 TRF Tandem_Repeat 219841 219885 90 + . . scaffold210 GLEAN promoter 222042 223041 0.552757 + . ID=CGI_10015889; scaffold210 GLEAN mRNA 223042 231005 0.552757 + . ID=CGI_10015889; scaffold210 WUBlastX LTR_Ngaro 223521 223766 174 + . . scaffold210 WUBlastX LTR_Ngaro 223521 224009 88 + . . scaffold210 WUBlastX LTR_Ngaro 224167 224769 379 + . . scaffold210 WUBlastX LTR_Ngaro 224170 224676 389 + . . scaffold210 WUBlastX LTR_Ngaro 224681 225130 310 + . . scaffold210 WUBlastX LTR_Ngaro 225153 225224 23 + . . scaffold210 WUBlastX LTR_Ngaro 225226 225414 28 + . . scaffold210 WUBlastX LTR_Ngaro 225375 226229 258 + . . scaffold210 WUBlastX LTR_Ngaro 226235 226327 20 + . . scaffold210 WUBlastX LTR_Ngaro 239998 240351 58 - . . scaffold210 GLEAN mRNA 242168 245452 0.999027 - . ID=CGI_10015890; scaffold210 GLEAN promoter 245453 246452 0.999027 - . ID=CGI_10015890; scaffold210 GLEAN mRNA 246900 267736 0.958099 - . ID=CGI_10015891; scaffold210 GLEAN promoter 248471 249470 0.16485 + . ID=CGI_10015893; scaffold210 GLEAN mRNA 249471 268338 0.16485 + . ID=CGI_10015893; scaffold210 WUBlastX DNA_En-Spm 261371 263122 401 + . . scaffold210 GLEAN promoter 267737 268736 0.958099 - . ID=CGI_10015891; scaffold210 WUBlastX LTR_Gypsy 276759 277349 93 - . . scaffold210 WUBlastX LTR_Gypsy-Cigr 276912 277355 209 - . . scaffold210 WUBlastX LTR_Gypsy 277333 278130 117 - . . scaffold210 WUBlastX LTR_Gypsy 277342 277998 381 - . . scaffold210 WUBlastX LTR_Gypsy 278186 278545 24 - . . scaffold210 WUBlastX LTR_Gypsy 278246 278818 106 - . . scaffold210 WUBlastX LTR_Gypsy 278375 278818 161 - . . scaffold210 WUBlastX LTR_Gypsy 278621 278818 169 - . . scaffold210 WUBlastX LTR_Gypsy 278621 278881 139 - . . scaffold210 WUBlastX LTR_Gypsy 278881 278952 20 - . . scaffold210 WUBlastX LTR_Gypsy 279630 279926 147 - . . scaffold210 WUBlastX LTR_Gypsy-Cigr 279690 279929 206 - . . scaffold210 WUBlastX LTR_Gypsy-Cigr 279934 280110 151 - . . scaffold210 WUBlastX LTR_Gypsy 279934 280200 77 - . . scaffold210 WUBlastX LTR_Gypsy 281011 281106 20 - . . scaffold210 WUBlastX LINE_L1-Tx1 286422 287933 419 - . . scaffold210 WUBlastX LINE_L1 287637 287999 100 - . . scaffold210 TRF Tandem_Repeat 288026 288075 75 + . . scaffold210 TRF Tandem_Repeat 292829 292870 84 + . . scaffold210 TRF Tandem_Repeat 316948 316993 92 + . . scaffold210 TRF Tandem_Repeat 316993 317037 90 + . . scaffold210 GLEAN promoter 318403 319402 0.999326 + . ID=CGI_10015895; scaffold210 GLEAN mRNA 319403 320101 0.999326 + . ID=CGI_10015895; scaffold210 GLEAN mRNA 322334 328354 0.999051 - . ID=CGI_10015896; scaffold210 GLEAN promoter 328355 329354 0.999051 - . ID=CGI_10015896; scaffold210 GLEAN mRNA 332653 333528 0.999986 - . ID=CGI_10015897; scaffold210 GLEAN promoter 333529 334528 0.999986 - . ID=CGI_10015897; scaffold210 GLEAN mRNA 336821 357072 0.999624 - . ID=CGI_10015898; scaffold210 GLEAN promoter 356624 357623 1 + . ID=CGI_10015899; scaffold210 GLEAN promoter 357073 358072 0.999624 - . ID=CGI_10015898; scaffold210 GLEAN mRNA 357624 369316 1 + . ID=CGI_10015899; scaffold210 WUBlastX DNA_hAT-Ac 358283 358753 80 - . . scaffold210 WUBlastX DNA_hAT-Ac 358406 358870 171 - . . scaffold210 TRF Tandem_Repeat 363396 363879 968 + . . scaffold210 GLEAN mRNA 371845 374484 1 - . ID=CGI_10015900; scaffold210 GLEAN promoter 374485 375484 1 - . ID=CGI_10015900; scaffold210 TRF Tandem_Repeat 374771 374851 144 + . . scaffold210 GLEAN mRNA 377123 383363 0.993425 - . ID=CGI_10015901; scaffold210 GLEAN promoter 383364 384363 0.993425 - . ID=CGI_10015901; scaffold210 WUBlastX LINE_L2 385200 385487 29 + . . scaffold210 GLEAN promoter 386079 387078 1 + . ID=CGI_10015902; scaffold210 GLEAN mRNA 387079 390368 1 + . ID=CGI_10015902; scaffold210 GLEAN promoter 392570 393569 1 + . ID=CGI_10015903; scaffold210 GLEAN mRNA 393570 396551 1 + . ID=CGI_10015903; scaffold210 TRF Tandem_Repeat 398016 398059 88 + . . scaffold210 GLEAN promoter 401340 402339 0.997518 + . ID=CGI_10015904; scaffold210 GLEAN mRNA 402340 405320 0.997518 + . ID=CGI_10015904; scaffold210 GLEAN promoter 409849 410848 0.526266 + . ID=CGI_10015905; scaffold210 GLEAN mRNA 410849 421921 0.526266 + . ID=CGI_10015905; scaffold210 TRF Tandem_Repeat 413682 413728 94 + . . scaffold210 WUBlastX LINE_RTE-BovB 421790 421918 56 + . . scaffold210 GLEAN mRNA 422009 425297 1 - . ID=CGI_10015906; scaffold210 TRF Tandem_Repeat 422205 422238 52 + . . scaffold210 GLEAN promoter 425298 426297 1 - . ID=CGI_10015906; scaffold210 WUBlastX DNA_Crypton 426192 426665 85 + . . scaffold210 GLEAN mRNA 426681 440258 0.999993 - . ID=CGI_10015907; scaffold210 WUBlastX DNA_Crypton 427104 427439 104 + . . scaffold210 WUBlastX DNA_Crypton 427140 427637 28 + . . scaffold210 TRF Tandem_Repeat 431856 431930 141 + . . scaffold210 TRF Tandem_Repeat 432815 432853 78 + . . scaffold210 WUBlastX LINE_L2 438859 439737 326 - . . scaffold210 WUBlastX LINE_L2 439748 440077 178 - . . scaffold210 GLEAN promoter 440259 441258 0.999993 - . ID=CGI_10015907; scaffold210 WUBlastX LINE_RTE-X 441526 441621 22 - . . scaffold210 WUBlastX LINE_RTE-X 441645 441980 96 - . . scaffold210 WUBlastX LINE_RTE-X 442052 442153 37 - . . scaffold210 WUBlastX LINE_L2 443483 444172 257 - . . scaffold210 WUBlastX LINE_L2 445367 446053 243 - . . scaffold211 WUBlastX LTR_Pao 18 1895 1482 + . . scaffold211 WUBlastX DNA_Harbinger 4195 4455 73 + . . scaffold211 WUBlastX DNA_Harbinger 4255 4461 171 + . . scaffold211 WUBlastX LTR_Gypsy 15148 15408 148 - . . scaffold211 TRF Tandem_Repeat 17635 17679 76 + . . scaffold211 WUBlastX LTR_Pao 18435 19763 616 + . . scaffold211 WUBlastX LTR_Pao 18636 19763 1026 + . . scaffold211 GLEAN promoter 19840 20839 0.430892 + . ID=CGI_10026932; scaffold211 GLEAN mRNA 20840 30971 0.430892 + . ID=CGI_10026932; scaffold211 TRF Tandem_Repeat 21141 21213 146 + . . scaffold211 WUBlastX LINE_L2 35046 36434 435 - . . scaffold211 GLEAN promoter 64172 65171 0.675585 + . ID=CGI_10026933; scaffold211 GLEAN mRNA 65172 78719 0.675585 + . ID=CGI_10026933; scaffold211 TRF Tandem_Repeat 66356 66407 104 + . . scaffold211 TRF Tandem_Repeat 100468 100521 56 + . . scaffold211 GLEAN promoter 102619 103618 0.701943 + . ID=CGI_10026934; scaffold211 GLEAN mRNA 103619 127620 0.701943 + . ID=CGI_10026934; scaffold211 GLEAN promoter 152748 153747 0.811248 + . ID=CGI_10026935; scaffold211 GLEAN mRNA 153748 163987 0.811248 + . ID=CGI_10026935; scaffold211 GLEAN mRNA 172259 206580 0.937536 - . ID=CGI_10026936; scaffold211 TRF Tandem_Repeat 177250 177538 375 + . . scaffold211 TRF Tandem_Repeat 185574 185660 156 + . . scaffold211 TRF Tandem_Repeat 194473 194499 54 + . . scaffold211 TRF Tandem_Repeat 206213 206252 80 + . . scaffold211 GLEAN promoter 206581 207580 0.937536 - . ID=CGI_10026936; scaffold211 TRF Tandem_Repeat 216609 216675 80 + . . scaffold211 TRF Tandem_Repeat 221495 221545 50 + . . scaffold211 GLEAN mRNA 230714 234648 1 - . ID=CGI_10026937; scaffold211 GLEAN promoter 234649 235648 1 - . ID=CGI_10026937; scaffold211 WUBlastX LINE_CR1-L2 241703 242056 88 + . . scaffold211 WUBlastX LINE_L2 241793 242080 95 + . . scaffold211 WUBlastX LINE_L2 242295 242618 30 + . . scaffold211 WUBlastX LINE_CR1-L2 242355 242765 132 + . . scaffold211 TRF Tandem_Repeat 245449 245496 53 + . . scaffold211 GLEAN mRNA 249568 278739 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 259705 259768 53 + . . scaffold211 TRF Tandem_Repeat 262350 262389 80 + . . scaffold211 TRF Tandem_Repeat 264422 265141 603 + . . scaffold211 TRF Tandem_Repeat 264422 265141 531 + . . scaffold211 TRF Tandem_Repeat 265874 266002 249 + . . scaffold211 TRF Tandem_Repeat 268728 268763 72 + . . scaffold211 GLEAN promoter 269840 270839 0.99133 + . ID=CGI_10026939; scaffold211 GLEAN mRNA 270840 281861 0.99133 + . ID=CGI_10026939; scaffold211 TRF Tandem_Repeat 271366 271403 76 + . . scaffold211 TRF Tandem_Repeat 273474 273800 530 + . . scaffold211 TRF Tandem_Repeat 273474 273899 558 + . . scaffold211 TRF Tandem_Repeat 273474 273899 556 + . . scaffold211 GLEAN promoter 278740 279739 0.325461 - . ID=CGI_10026938; scaffold211 TRF Tandem_Repeat 298061 298158 52 + . . scaffold211 GLEAN mRNA 300500 302479 1 - . ID=CGI_10026940; scaffold211 GLEAN promoter 302480 303479 1 - . ID=CGI_10026940; scaffold211 GLEAN mRNA 302993 303249 0.651123 - . ID=CGI_10026941; scaffold211 GLEAN promoter 303250 304249 0.651123 - . ID=CGI_10026941; scaffold211 GLEAN mRNA 312274 315953 0.999676 - . ID=CGI_10026942; scaffold211 GLEAN promoter 315954 316953 0.999676 - . ID=CGI_10026942; scaffold211 TRF Tandem_Repeat 319674 319719 92 + . . scaffold211 TRF Tandem_Repeat 346638 346674 74 + . . scaffold211 WUBlastX LINE_RTE-X 350124 350360 76 + . . scaffold211 WUBlastX LINE_RTE-X 350139 350300 99 + . . scaffold211 TRF Tandem_Repeat 352602 352637 54 + . . scaffold211 GLEAN mRNA 355819 358349 0.575444 - . ID=CGI_10026943; scaffold211 GLEAN promoter 358350 359349 0.575444 - . ID=CGI_10026943; scaffold211 GLEAN promoter 371628 372627 0.249606 + . ID=CGI_10026944; scaffold211 GLEAN mRNA 372628 388702 0.249606 + . ID=CGI_10026944; scaffold211 WUBlastX LINE_L2 389146 389454 22 - . . scaffold211 WUBlastX LINE_RTE-X 390167 390514 29 + . . scaffold211 WUBlastX LINE_RTE-X 391333 391515 25 + . . scaffold211 GLEAN promoter 394935 395934 0.333219 + . ID=CGI_10026945; scaffold211 GLEAN mRNA 395935 409632 0.333219 + . ID=CGI_10026945; scaffold211 GLEAN promoter 411753 412752 0.361408 + . ID=CGI_10026946; scaffold211 GLEAN mRNA 412753 443457 0.361408 + . ID=CGI_10026946; scaffold211 TRF Tandem_Repeat 425652 425927 277 + . . scaffold211 TRF Tandem_Repeat 425951 426409 499 + . . scaffold211 TRF Tandem_Repeat 426631 427259 907 + . . scaffold211 TRF Tandem_Repeat 429424 429495 85 + . . scaffold211 TRF Tandem_Repeat 429428 429491 56 + . . scaffold211 TRF Tandem_Repeat 442753 442895 250 + . . scaffold211 GLEAN promoter 445023 446022 0.94957 + . ID=CGI_10026947; scaffold211 GLEAN mRNA 446023 453246 0.94957 + . ID=CGI_10026947; scaffold211 GLEAN mRNA 456517 465821 0.611369 - . ID=CGI_10026948; scaffold211 TRF Tandem_Repeat 460319 460449 226 + . . scaffold211 TRF Tandem_Repeat 461773 463396 2466 + . . scaffold211 TRF Tandem_Repeat 461773 463396 2450 + . . scaffold211 TRF Tandem_Repeat 461773 463396 2442 + . . scaffold211 GLEAN promoter 465822 466821 0.611369 - . ID=CGI_10026948; scaffold211 WUBlastX LINE_L2 469086 469589 28 + . . scaffold211 WUBlastX LINE_CR1-L2 469179 469589 43 + . . scaffold211 WUBlastX LINE_CR1-L2 469429 469884 222 + . . scaffold211 TRF Tandem_Repeat 474222 474399 166 + . . scaffold211 TRF Tandem_Repeat 474222 474400 231 + . . scaffold211 TRF Tandem_Repeat 478774 478818 90 + . . scaffold211 GLEAN mRNA 480295 480882 0.611753 - . ID=CGI_10026949; scaffold211 GLEAN promoter 480883 481882 0.611753 - . ID=CGI_10026949; scaffold211 GLEAN promoter 497321 498320 0.965908 + . ID=CGI_10026950; scaffold211 GLEAN promoter 498106 499105 0.350865 + . ID=CGI_10026951; scaffold211 GLEAN mRNA 498321 498611 0.965908 + . ID=CGI_10026950; scaffold211 GLEAN mRNA 499106 515867 0.350865 + . ID=CGI_10026951; scaffold211 TRF Tandem_Repeat 512540 512624 134 + . . scaffold211 TRF Tandem_Repeat 513128 513253 131 + . . scaffold211 TRF Tandem_Repeat 513128 513253 108 + . . scaffold211 TRF Tandem_Repeat 517662 517695 50 + . . scaffold211 TRF Tandem_Repeat 518221 518665 572 + . . scaffold211 GLEAN promoter 521524 522523 0.999693 + . ID=CGI_10026952; scaffold211 GLEAN mRNA 522524 530657 0.999693 + . ID=CGI_10026952; scaffold211 TRF Tandem_Repeat 524264 524316 106 + . . scaffold211 GLEAN promoter 534706 535705 0.773638 + . ID=CGI_10026953; scaffold211 GLEAN mRNA 535706 542596 0.773638 + . ID=CGI_10026953; scaffold211 GLEAN promoter 553781 554780 0.996732 + . ID=CGI_10026954; scaffold211 GLEAN mRNA 554781 555131 0.996732 + . ID=CGI_10026954; scaffold211 GLEAN mRNA 559289 569428 0.611829 - . ID=CGI_10026955; scaffold211 TRF Tandem_Repeat 564783 564856 61 + . . scaffold211 GLEAN promoter 569429 570428 0.611829 - . ID=CGI_10026955; scaffold211 TRF Tandem_Repeat 569596 569837 281 + . . scaffold211 TRF Tandem_Repeat 569596 569828 215 + . . scaffold211 TRF Tandem_Repeat 569598 569837 239 + . . scaffold211 TRF Tandem_Repeat 570498 570758 261 + . . scaffold211 GLEAN mRNA 572729 577991 1 - . ID=CGI_10026956; scaffold211 GLEAN promoter 577992 578991 1 - . ID=CGI_10026956; scaffold211 GLEAN promoter 604957 605956 0.999965 + . ID=CGI_10026957; scaffold211 GLEAN mRNA 605957 606905 0.999965 + . ID=CGI_10026957; scaffold211 TRF Tandem_Repeat 612938 613052 65 + . . scaffold211 TRF Tandem_Repeat 612938 613037 80 + . . scaffold211 TRF Tandem_Repeat 617972 618013 50 + . . scaffold211 TRF Tandem_Repeat 620111 620794 831 + . . scaffold211 TRF Tandem_Repeat 626013 626052 71 + . . scaffold211 TRF Tandem_Repeat 628636 628685 82 + . . scaffold211 TRF Tandem_Repeat 630416 630484 57 + . . scaffold211 WUBlastX LTR_Ngaro 641225 641350 22 - . . scaffold211 WUBlastX LTR_Ngaro 641282 641350 30 - . . scaffold211 WUBlastX LTR_Ngaro 641320 641943 129 - . . scaffold211 WUBlastX LINE_RTE-X 642712 643008 69 - . . scaffold211 WUBlastX LINE_RTE-X 642712 642924 92 - . . scaffold211 WUBlastX LINE_RTE-X 643113 643232 24 - . . scaffold211 WUBlastX LINE_RTE-X 643146 643226 45 - . . scaffold211 WUBlastX LINE_RTE-X 643434 643679 58 - . . scaffold211 WUBlastX LINE_L1 643678 643725 25 - . . scaffold211 WUBlastX LINE_RTE-X 643693 644496 256 - . . scaffold211 WUBlastX LINE_CR1 644254 644631 31 - . . scaffold211 TRF Tandem_Repeat 652472 652602 129 + . . scaffold211 WUBlastX LINE_Penelope 657227 657541 100 - . . scaffold211 WUBlastX LINE_Penelope 657586 658749 434 - . . scaffold211 WUBlastX LINE_Penelope 658755 659045 60 - . . scaffold211 WUBlastX LINE_Penelope 658836 659096 44 - . . scaffold211 GLEAN mRNA 668184 668555 0.947238 - . ID=CGI_10026958; scaffold211 GLEAN promoter 668556 669555 0.947238 - . ID=CGI_10026958; scaffold211 WUBlastX LTR_Copia 668693 668872 24 - . . scaffold211 WUBlastX LTR_Gypsy-Cigr 669190 670461 296 - . . scaffold211 WUBlastX LTR_Gypsy 670553 670966 32 - . . scaffold211 WUBlastX LTR_Gypsy 670643 670966 123 - . . scaffold211 WUBlastX LTR_Gypsy 670763 671020 125 - . . scaffold211 WUBlastX LTR_Gypsy-Cigr 670790 670975 135 - . . scaffold211 GLEAN promoter 686123 687122 0.98232 + . ID=CGI_10026959; scaffold211 GLEAN mRNA 687123 691110 0.98232 + . ID=CGI_10026959; scaffold211 GLEAN promoter 690120 691119 0.0754063 + . ID=CGI_10026960; scaffold211 GLEAN mRNA 691120 715917 0.0754063 + . ID=CGI_10026960; scaffold211 TRF Tandem_Repeat 691720 691762 50 + . . scaffold211 TRF Tandem_Repeat 694026 694188 120 + . . scaffold211 TRF Tandem_Repeat 694052 694316 403 + . . scaffold211 TRF Tandem_Repeat 694079 694302 76 + . . scaffold211 TRF Tandem_Repeat 698048 698374 228 + . . scaffold211 WUBlastX LINE_CR1 698613 698894 58 - . . scaffold211 WUBlastX LINE_L1-Tx1 699409 699846 42 + . . scaffold211 WUBlastX LINE_L1-Tx1 699478 699846 143 + . . scaffold211 WUBlastX LINE_L2 701283 701417 29 + . . scaffold211 WUBlastX LINE_L1-Tx1 701343 702983 615 + . . scaffold211 WUBlastX LINE_RTE-X 702979 703170 35 + . . scaffold211 WUBlastX LINE_L1-Tx1 703018 703929 251 + . . scaffold211 WUBlastX LINE_RTE-BovB 704072 704149 21 + . . scaffold211 TRF Tandem_Repeat 709433 709799 373 + . . scaffold211 TRF Tandem_Repeat 709435 709796 382 + . . scaffold211 TRF Tandem_Repeat 710427 710514 70 + . . scaffold211 TRF Tandem_Repeat 710440 710732 442 + . . scaffold211 TRF Tandem_Repeat 713149 713200 104 + . . scaffold211 GLEAN mRNA 717100 718547 0.836238 - . ID=CGI_10026961; scaffold211 GLEAN promoter 718548 719547 0.836238 - . ID=CGI_10026961; scaffold211 GLEAN promoter 721435 722434 0.999808 + . ID=CGI_10026962; scaffold211 GLEAN mRNA 722435 725661 0.999808 + . ID=CGI_10026962; scaffold211 WUBlastX LINE_R2-Hero 731672 731728 20 + . . scaffold211 WUBlastX LINE_R2-Hero 731952 732038 20 + . . scaffold211 WUBlastX LINE_R2-Hero 732034 732210 29 + . . scaffold211 GLEAN promoter 732857 733856 1 + . ID=CGI_10026963; scaffold211 GLEAN mRNA 733857 737034 1 + . ID=CGI_10026963; scaffold211 GLEAN promoter 739668 740667 0.75216 + . ID=CGI_10026964; scaffold211 GLEAN mRNA 740668 755316 0.75216 + . ID=CGI_10026964; scaffold211 TRF Tandem_Repeat 745943 746369 637 + . . scaffold211 TRF Tandem_Repeat 758127 758366 480 + . . scaffold211 TRF Tandem_Repeat 761469 761495 54 + . . scaffold211 GLEAN promoter 762314 763313 0.153284 + . ID=CGI_10026965; scaffold211 GLEAN mRNA 763314 776390 0.153284 + . ID=CGI_10026965; scaffold211 GLEAN mRNA 771548 780245 0.999572 - . ID=CGI_10026966; scaffold211 TRF Tandem_Repeat 773166 773216 102 + . . scaffold211 GLEAN promoter 780246 781245 0.999572 - . ID=CGI_10026966; scaffold211 WUBlastX LINE_RTE-X 786872 787006 46 + . . scaffold211 WUBlastX LINE_RTE-X 787237 787506 47 + . . scaffold211 WUBlastX LINE_RTE-X 787285 787506 50 + . . scaffold211 GLEAN promoter 789612 790611 0.54408 + . ID=CGI_10026967; scaffold211 GLEAN mRNA 790612 795001 0.54408 + . ID=CGI_10026967; scaffold211 WUBlastX LTR_DIRS 809599 810054 36 - . . scaffold211 WUBlastX LTR_DIRS 810549 810635 22 - . . scaffold211 WUBlastX LINE_RTE-X 837711 838160 89 + . . scaffold211 TRF Tandem_Repeat 839170 839279 157 + . . scaffold211 TRF Tandem_Repeat 845299 845365 134 + . . scaffold211 TRF Tandem_Repeat 845299 845382 58 + . . scaffold211 GLEAN promoter 863065 864064 0.921075 + . ID=CGI_10026969; scaffold211 GLEAN mRNA 864065 864412 0.921075 + . ID=CGI_10026969; scaffold211 WUBlastX LTR_Pao 865307 865573 36 + . . scaffold211 WUBlastX LTR_Pao 865409 870775 3649 + . . scaffold211 TRF Tandem_Repeat 896439 896483 54 + . . scaffold211 TRF Tandem_Repeat 897418 897445 56 + . . scaffold211 WUBlastX LINE_L1 907485 907781 71 - . . scaffold211 TRF Tandem_Repeat 914595 914727 133 + . . scaffold211 TRF Tandem_Repeat 921639 921836 342 + . . scaffold211 WUBlastX DNA_TcMar-Tc1 927039 927101 21 + . . scaffold211 WUBlastX DNA_TcMar-Tc1 927121 927246 39 + . . scaffold211 WUBlastX DNA_TcMar-Tc1 927449 928021 208 + . . scaffold211 TRF Tandem_Repeat 928953 931046 1989 + . . scaffold211 TRF Tandem_Repeat 931358 931579 381 + . . scaffold211 GLEAN promoter 937475 938474 0.402529 + . ID=CGI_10026970; scaffold211 GLEAN mRNA 938475 952655 0.402529 + . ID=CGI_10026970; scaffold211 GLEAN mRNA 954777 972416 0.999996 - . ID=CGI_10026971; scaffold211 TRF Tandem_Repeat 959909 960091 106 + . . scaffold211 TRF Tandem_Repeat 960209 960734 626 + . . scaffold211 TRF Tandem_Repeat 964637 964845 267 + . . scaffold211 WUBlastX LINE_L2 969465 969518 21 + . . scaffold211 WUBlastX LINE_CR1 969497 971362 1436 + . . scaffold211 WUBlastX LINE_CR1 971516 971800 180 + . . scaffold211 WUBlastX LINE_CR1-L2 971522 971854 50 + . . scaffold211 GLEAN promoter 972417 973416 0.999996 - . ID=CGI_10026971; scaffold211 TRF Tandem_Repeat 972984 973027 70 + . . scaffold211 TRF Tandem_Repeat 976916 976965 100 + . . scaffold211 WUBlastX LINE_RTE-X 977066 977377 73 + . . scaffold211 WUBlastX LINE_RTE-X 977150 977449 66 + . . scaffold211 GLEAN promoter 977840 978839 0.74015 + . ID=CGI_10026972; scaffold211 GLEAN mRNA 978840 989319 0.74015 + . ID=CGI_10026972; scaffold211 TRF Tandem_Repeat 979658 979696 69 + . . scaffold211 TRF Tandem_Repeat 983959 984287 493 + . . scaffold211 TRF Tandem_Repeat 986243 986457 215 + . . scaffold211 WUBlastX LINE_RTE-X 986498 986995 51 + . . scaffold211 WUBlastX LINE_RTE-X 986558 986866 82 + . . scaffold211 WUBlastX LINE_RTE-X 986558 986971 80 + . . scaffold211 TRF Tandem_Repeat 987929 987977 98 + . . scaffold211 TRF Tandem_Repeat 989394 989678 403 + . . scaffold211 TRF Tandem_Repeat 990521 990661 264 + . . scaffold211 TRF Tandem_Repeat 991315 991373 109 + . . scaffold211 WUBlastX LINE_RTE-X 992922 993194 65 - . . scaffold211 WUBlastX LINE_RTE-X 993015 993194 109 - . . scaffold211 TRF Tandem_Repeat 996937 997006 113 + . . scaffold211 GLEAN mRNA 997263 997919 1 - . ID=CGI_10026973; scaffold211 GLEAN promoter 997920 998919 1 - . ID=CGI_10026973; scaffold211 TRF Tandem_Repeat 1000867 1000920 90 + . . scaffold211 TRF Tandem_Repeat 1008126 1008293 320 + . . scaffold211 TRF Tandem_Repeat 1009378 1009812 519 + . . scaffold211 TRF Tandem_Repeat 1012838 1012898 122 + . . scaffold211 WUBlastX LTR_Pao 1018168 1018971 668 - . . scaffold211 WUBlastX LTR_Pao 1018963 1020006 784 - . . scaffold211 WUBlastX LTR_Pao 1018984 1020513 774 - . . scaffold211 WUBlastX LTR_Pao 1020385 1021263 524 - . . scaffold211 WUBlastX LTR_Pao 1021239 1021757 46 - . . scaffold211 TRF Tandem_Repeat 1024922 1025181 450 + . . scaffold211 GLEAN mRNA 1034328 1045669 0.560213 - . ID=CGI_10026974; scaffold211 TRF Tandem_Repeat 1041515 1041854 232 + . . scaffold211 TRF Tandem_Repeat 1041515 1041853 264 + . . scaffold211 TRF Tandem_Repeat 1041515 1041830 269 + . . scaffold211 TRF Tandem_Repeat 1041571 1041850 287 + . . scaffold211 TRF Tandem_Repeat 1041945 1042058 205 + . . scaffold211 TRF Tandem_Repeat 1045165 1045270 97 + . . scaffold211 GLEAN promoter 1045670 1046669 0.560213 - . ID=CGI_10026974; scaffold211 GLEAN promoter 1046029 1047028 0.976053 + . ID=CGI_10026975; scaffold211 GLEAN mRNA 1047029 1061024 0.976053 + . ID=CGI_10026975; scaffold211 TRF Tandem_Repeat 1047662 1047690 58 + . . scaffold211 TRF Tandem_Repeat 1048875 1048945 117 + . . scaffold211 TRF Tandem_Repeat 1051855 1052291 704 + . . scaffold211 TRF Tandem_Repeat 1058369 1058400 64 + . . scaffold211 TRF Tandem_Repeat 1059918 1060134 194 + . . scaffold211 TRF Tandem_Repeat 1061604 1061635 64 + . . scaffold211 TRF Tandem_Repeat 1062787 1062821 54 + . . scaffold211 GLEAN mRNA 1063316 1065236 1 - . ID=CGI_10026976; scaffold211 GLEAN promoter 1065237 1066236 1 - . ID=CGI_10026976; scaffold211 GLEAN mRNA 1066152 1071086 0.999999 - . ID=CGI_10026977; scaffold211 TRF Tandem_Repeat 1069866 1070299 696 + . . scaffold211 TRF Tandem_Repeat 1069866 1070299 735 + . . scaffold211 GLEAN promoter 1071087 1072086 0.999999 - . ID=CGI_10026977; scaffold211 TRF Tandem_Repeat 1074588 1074642 67 + . . scaffold211 TRF Tandem_Repeat 1074995 1075057 126 + . . scaffold211 GLEAN promoter 1076207 1077206 0.998379 + . ID=CGI_10026978; scaffold211 GLEAN mRNA 1077207 1113866 0.998379 + . ID=CGI_10026978; scaffold211 TRF Tandem_Repeat 1080103 1080446 395 + . . scaffold211 GLEAN mRNA 1088734 1098247 0.999676 - . ID=CGI_10026979; scaffold211 TRF Tandem_Repeat 1089704 1090786 1465 + . . scaffold211 TRF Tandem_Repeat 1092087 1093146 1661 + . . scaffold211 TRF Tandem_Repeat 1093409 1093722 371 + . . scaffold211 TRF Tandem_Repeat 1093412 1093722 415 + . . scaffold211 TRF Tandem_Repeat 1093412 1093722 297 + . . scaffold211 TRF Tandem_Repeat 1094024 1094101 69 + . . scaffold211 TRF Tandem_Repeat 1095927 1095981 110 + . . scaffold211 GLEAN promoter 1098248 1099247 0.999676 - . ID=CGI_10026979; scaffold211 GLEAN mRNA 1098395 1106294 0.882689 - . ID=CGI_10026980; scaffold211 TRF Tandem_Repeat 1101324 1101388 103 + . . scaffold211 TRF Tandem_Repeat 1103511 1103548 76 + . . scaffold211 GLEAN promoter 1106295 1107294 0.882689 - . ID=CGI_10026980; scaffold211 GLEAN promoter 1115501 1116500 0.392199 + . ID=CGI_10026981; scaffold211 GLEAN mRNA 1116501 1121610 0.392199 + . ID=CGI_10026981; scaffold211 TRF Tandem_Repeat 1120170 1120334 321 + . . scaffold211 GLEAN promoter 1133271 1134270 1 + . ID=CGI_10026982; scaffold211 GLEAN mRNA 1134271 1135490 1 + . ID=CGI_10026982; scaffold211 TRF Tandem_Repeat 1135156 1135194 78 + . . scaffold211 TRF Tandem_Repeat 1136266 1136313 51 + . . scaffold211 TRF Tandem_Repeat 1136271 1136313 50 + . . scaffold211 TRF Tandem_Repeat 1136785 1136823 78 + . . scaffold211 GLEAN promoter 1139326 1140325 0.986676 + . ID=CGI_10026983; scaffold211 GLEAN mRNA 1140326 1140628 0.986676 + . ID=CGI_10026983; scaffold211 GLEAN promoter 1142656 1143655 1 + . ID=CGI_10026984; scaffold211 GLEAN mRNA 1143656 1143880 1 + . ID=CGI_10026984; scaffold211 GLEAN mRNA 1145411 1166483 0.999676 - . ID=CGI_10026985; scaffold211 TRF Tandem_Repeat 1163903 1163934 64 + . . scaffold211 GLEAN promoter 1166484 1167483 0.999676 - . ID=CGI_10026985; scaffold211 TRF Tandem_Repeat 1167334 1167375 84 + . . scaffold211 TRF Tandem_Repeat 1168016 1168081 132 + . . scaffold211 GLEAN mRNA 1170815 1185605 0.702385 - . ID=CGI_10026986; scaffold211 TRF Tandem_Repeat 1172709 1172738 60 + . . scaffold211 GLEAN promoter 1185606 1186605 0.702385 - . ID=CGI_10026986; scaffold211 GLEAN mRNA 1190589 1195586 1 - . ID=CGI_10026987; scaffold211 GLEAN promoter 1195587 1196586 1 - . ID=CGI_10026987; scaffold211 TRF Tandem_Repeat 1196185 1196818 920 + . . scaffold211 TRF Tandem_Repeat 1196185 1196805 966 + . . scaffold211 GLEAN promoter 1196783 1197782 0.999661 + . ID=CGI_10026988; scaffold211 GLEAN mRNA 1197783 1200453 0.999661 + . ID=CGI_10026988; scaffold211 TRF Tandem_Repeat 1200459 1200657 292 + . . scaffold211 TRF Tandem_Repeat 1200459 1200689 306 + . . scaffold211 GLEAN promoter 1202057 1203056 0.999984 + . ID=CGI_10026989; scaffold211 TRF Tandem_Repeat 1202191 1202234 65 + . . scaffold211 TRF Tandem_Repeat 1202191 1202234 65 + . . scaffold211 TRF Tandem_Repeat 1202476 1202533 116 + . . scaffold211 GLEAN mRNA 1203057 1204655 0.999984 + . ID=CGI_10026989; scaffold211 WUBlastX LINE_RTE-X 1206986 1207369 158 - . . scaffold211 WUBlastX LINE_RTE-X 1207061 1207372 167 - . . scaffold211 WUBlastX LINE_RTE-X 1207390 1207683 71 - . . scaffold211 GLEAN mRNA 1209068 1210282 0.999661 - . ID=CGI_10026990; scaffold211 GLEAN promoter 1210283 1211282 0.999661 - . ID=CGI_10026990; scaffold211 GLEAN mRNA 1211816 1226379 0.999115 - . ID=CGI_10026991; scaffold211 TRF Tandem_Repeat 1216892 1217492 698 + . . scaffold211 TRF Tandem_Repeat 1218131 1219170 1413 + . . scaffold211 GLEAN promoter 1226380 1227379 0.999115 - . ID=CGI_10026991; scaffold211 GLEAN promoter 1226740 1227739 0.889891 + . ID=CGI_10026992; scaffold211 TRF Tandem_Repeat 1226908 1226951 54 + . . scaffold211 TRF Tandem_Repeat 1227077 1227181 104 + . . scaffold211 TRF Tandem_Repeat 1227077 1227181 104 + . . scaffold211 GLEAN mRNA 1227740 1237354 0.889891 + . ID=CGI_10026992; scaffold211 TRF Tandem_Repeat 1227999 1228072 76 + . . scaffold211 TRF Tandem_Repeat 1228023 1228106 80 + . . scaffold211 TRF Tandem_Repeat 1240740 1241062 196 + . . scaffold211 GLEAN promoter 1245337 1246336 0.6496 + . ID=CGI_10026993; scaffold211 GLEAN mRNA 1246337 1246528 0.6496 + . ID=CGI_10026993; scaffold211 WUBlastX LINE_RTE-BovB 1259617 1259823 111 + . . scaffold211 TRF Tandem_Repeat 1259870 1259961 103 + . . scaffold211 GLEAN mRNA 1267052 1275741 1 - . ID=CGI_10026994; scaffold211 WUBlastX DNA_Sola 1274697 1275065 83 + . . scaffold211 GLEAN promoter 1275742 1275876 1 - . ID=CGI_10026994; scaffold212 WUBlastX LTR_Pao 1466 1555 24 + . . scaffold212 WUBlastX LTR_Pao 2461 3354 818 + . . scaffold213 TRF Tandem_Repeat 3508 3706 344 + . . scaffold213 TRF Tandem_Repeat 4498 4705 371 + . . scaffold213 GLEAN mRNA 5997 34179 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 8305 8560 311 + . . scaffold213 TRF Tandem_Repeat 16986 17010 50 + . . scaffold213 TRF Tandem_Repeat 19552 19596 90 + . . scaffold213 TRF Tandem_Repeat 20628 20713 172 + . . scaffold213 TRF Tandem_Repeat 21551 21840 159 + . . scaffold213 TRF Tandem_Repeat 21653 21846 78 + . . scaffold213 TRF Tandem_Repeat 21667 21832 273 + . . scaffold213 TRF Tandem_Repeat 23212 23382 127 + . . scaffold213 TRF Tandem_Repeat 23277 23407 88 + . . scaffold213 TRF Tandem_Repeat 24597 24846 369 + . . scaffold213 TRF Tandem_Repeat 32065 32101 65 + . . scaffold213 GLEAN promoter 34180 35179 0.3911 - . ID=CGI_10007550; scaffold213 TRF Tandem_Repeat 35465 36548 1401 + . . scaffold213 TRF Tandem_Repeat 35465 36541 1499 + . . scaffold213 GLEAN promoter 37246 38245 0.707949 + . ID=CGI_10007551; scaffold213 GLEAN mRNA 38246 63515 0.707949 + . ID=CGI_10007551; scaffold213 TRF Tandem_Repeat 44965 46059 1530 + . . scaffold213 TRF Tandem_Repeat 46264 46308 72 + . . scaffold213 TRF Tandem_Repeat 53023 53089 134 + . . scaffold213 TRF Tandem_Repeat 56631 56688 91 + . . scaffold213 TRF Tandem_Repeat 59234 59274 82 + . . scaffold213 TRF Tandem_Repeat 74541 74628 108 + . . scaffold213 WUBlastX DNA_Kolobok 77162 77356 76 + . . scaffold213 WUBlastX DNA_Kolobok 77559 78005 104 + . . scaffold213 WUBlastX DNA_Kolobok 77700 78026 109 + . . scaffold213 WUBlastX DNA_Kolobok 79012 79182 38 + . . scaffold213 WUBlastX DNA_Kolobok 79021 79149 41 + . . scaffold213 WUBlastX DNA_Kolobok 79550 79786 48 + . . scaffold213 WUBlastX DNA_Kolobok 80935 81123 74 - . . scaffold213 WUBlastX DNA_Kolobok 80968 81216 113 - . . scaffold213 WUBlastX LINE_RTE-X 112976 113470 289 + . . scaffold213 WUBlastX LINE_RTE-X 113779 113835 26 + . . scaffold213 WUBlastX LINE_CR1 113782 113856 25 + . . scaffold213 WUBlastX LINE_RTE-X 113860 113976 57 + . . scaffold213 WUBlastX LINE_RTE-X 114002 114394 197 + . . scaffold213 TRF Tandem_Repeat 119162 119236 136 + . . scaffold213 TRF Tandem_Repeat 132845 133775 1362 + . . scaffold213 TRF Tandem_Repeat 135858 135912 101 + . . scaffold213 TRF Tandem_Repeat 136737 140544 5337 + . . scaffold213 TRF Tandem_Repeat 136737 140544 5346 + . . scaffold213 TRF Tandem_Repeat 140544 141953 1895 + . . scaffold213 TRF Tandem_Repeat 148361 149315 1165 + . . scaffold213 TRF Tandem_Repeat 149319 150603 1636 + . . scaffold213 TRF Tandem_Repeat 150603 151621 1562 + . . scaffold213 TRF Tandem_Repeat 151625 152376 1122 + . . scaffold213 GLEAN mRNA 155081 183799 0.877289 - . ID=CGI_10007552; scaffold213 TRF Tandem_Repeat 168001 168036 54 + . . scaffold213 WUBlastX DNA_hAT-Tip100 169221 169460 152 + . . scaffold213 WUBlastX DNA_hAT-Tip100 169465 169827 162 + . . scaffold213 WUBlastX DNA_hAT-Tip100 169866 170030 87 + . . scaffold213 WUBlastX DNA_Maverick 170041 170355 133 - . . scaffold213 WUBlastX DNA_Maverick 170357 170542 158 - . . scaffold213 WUBlastX DNA_Maverick 170565 170981 326 - . . scaffold213 WUBlastX DNA_Maverick 170998 171831 614 - . . scaffold213 WUBlastX DNA_Maverick 171846 172214 189 - . . scaffold213 WUBlastX DNA_Maverick 171846 172484 100 - . . scaffold213 WUBlastX DNA_Maverick 172213 172881 91 - . . scaffold213 WUBlastX DNA_Maverick 172887 173165 119 - . . scaffold213 TRF Tandem_Repeat 174318 174628 209 + . . scaffold213 WUBlastX DNA_TcMar-Tc1 175921 176052 80 - . . scaffold213 WUBlastX DNA_TcMar-Tc1 176046 176096 48 - . . scaffold213 WUBlastX DNA_TcMar-Tc1 176097 176726 222 - . . scaffold213 GLEAN promoter 183800 184316 0.877289 - . ID=CGI_10007552; scaffold215 TRF Tandem_Repeat 402 487 77 + . . scaffold215 GLEAN mRNA 11169 14877 0.999999 - . ID=CGI_10006637; scaffold215 GLEAN promoter 14878 15877 0.999999 - . ID=CGI_10006637; scaffold215 GLEAN promoter 15868 16867 1 + . ID=CGI_10006638; scaffold215 GLEAN mRNA 16868 20309 1 + . ID=CGI_10006638; scaffold215 TRF Tandem_Repeat 22603 22737 103 + . . scaffold215 TRF Tandem_Repeat 30309 30546 304 + . . scaffold215 TRF Tandem_Repeat 30554 30751 163 + . . scaffold215 GLEAN mRNA 35944 82448 0.542835 - . ID=CGI_10006639; scaffold215 TRF Tandem_Repeat 79347 79434 126 + . . scaffold215 GLEAN promoter 82449 83448 0.542835 - . ID=CGI_10006639; scaffold215 GLEAN mRNA 87621 92260 0.999988 - . ID=CGI_10006640; scaffold215 GLEAN promoter 91084 92083 1 + . ID=CGI_10006641; scaffold215 TRF Tandem_Repeat 91685 91756 117 + . . scaffold215 GLEAN mRNA 92084 92296 1 + . ID=CGI_10006641; scaffold215 GLEAN promoter 92261 93260 0.999988 - . ID=CGI_10006640; scaffold215 TRF Tandem_Repeat 94133 94175 86 + . . scaffold215 TRF Tandem_Repeat 95503 96886 1537 + . . scaffold215 TRF Tandem_Repeat 96101 96886 1152 + . . scaffold215 GLEAN mRNA 102287 104225 0.997734 - . ID=CGI_10006642; scaffold215 GLEAN promoter 104226 105225 0.997734 - . ID=CGI_10006642; scaffold215 TRF Tandem_Repeat 107595 109032 2073 + . . scaffold215 GLEAN promoter 108419 109418 0.272728 + . ID=CGI_10006643; scaffold215 GLEAN mRNA 109419 110448 0.272728 + . ID=CGI_10006643; scaffold215 WUBlastX DNA_Maverick 109434 109844 59 + . . scaffold215 TRF Tandem_Repeat 109969 110006 76 + . . scaffold215 TRF Tandem_Repeat 110719 110786 118 + . . scaffold215 GLEAN mRNA 113288 114847 0.99734 - . ID=CGI_10006644; scaffold215 GLEAN promoter 114848 115847 0.99734 - . ID=CGI_10006644; scaffold215 TRF Tandem_Repeat 118012 118407 474 + . . scaffold215 TRF Tandem_Repeat 118012 118407 472 + . . scaffold215 TRF Tandem_Repeat 118013 118407 555 + . . scaffold215 TRF Tandem_Repeat 118725 118750 52 + . . scaffold215 TRF Tandem_Repeat 120239 120790 624 + . . scaffold215 TRF Tandem_Repeat 120239 120789 631 + . . scaffold215 TRF Tandem_Repeat 120239 120790 624 + . . scaffold215 TRF Tandem_Repeat 123835 127802 4657 + . . scaffold215 GLEAN promoter 127263 128262 0.702348 + . ID=CGI_10006646; scaffold215 GLEAN mRNA 128263 149795 0.702348 + . ID=CGI_10006646; scaffold215 TRF Tandem_Repeat 144165 144222 116 + . . scaffold215 TRF Tandem_Repeat 145504 145572 138 + . . scaffold215 TRF Tandem_Repeat 145626 145661 63 + . . scaffold215 WUBlastX LINE_RTE-X 146651 146794 30 - . . scaffold215 GLEAN mRNA 149757 156902 0.354656 - . ID=CGI_10006647; scaffold215 TRF Tandem_Repeat 151193 151251 64 + . . scaffold215 TRF Tandem_Repeat 152592 152630 78 + . . scaffold215 TRF Tandem_Repeat 153400 153496 171 + . . scaffold215 WUBlastX LINE_RTE-BovB 155436 155600 29 - . . scaffold215 WUBlastX LINE_RTE-BovB 155549 155965 206 - . . scaffold215 WUBlastX LINE_RTE-BovB 155968 156450 178 - . . scaffold215 WUBlastX LINE_RTE-BovB 156121 156411 234 - . . scaffold215 WUBlastX LINE_RTE-BovB 156390 156479 87 - . . scaffold215 WUBlastX LINE_RTE-BovB 156479 156604 128 - . . scaffold215 TRF Tandem_Repeat 156686 156731 58 + . . scaffold215 TRF Tandem_Repeat 156729 156778 100 + . . scaffold215 GLEAN promoter 156903 157684 0.354656 - . ID=CGI_10006647; scaffold21736 WUBlastX LTR_Gypsy 3 221 149 - . . scaffold21736 WUBlastX LTR_Gypsy 167 895 274 - . . scaffold21736 WUBlastX LTR_Gypsy 182 1348 230 - . . scaffold21736 WUBlastX LTR_Gypsy 185 1060 244 - . . scaffold218 GLEAN promoter 102 1101 0.999996 + . ID=CGI_10007757; scaffold218 GLEAN mRNA 1102 2148 0.999996 + . ID=CGI_10007757; scaffold218 GLEAN promoter 4779 5778 0.999922 + . ID=CGI_10007758; scaffold218 GLEAN mRNA 5779 13615 0.999922 + . ID=CGI_10007758; scaffold218 TRF Tandem_Repeat 5854 5882 58 + . . scaffold218 TRF Tandem_Repeat 5916 5970 110 + . . scaffold218 GLEAN mRNA 15257 21231 0.613683 - . ID=CGI_10007759; scaffold218 GLEAN promoter 20641 21640 1 + . ID=CGI_10007760; scaffold218 GLEAN promoter 21232 22231 0.613683 - . ID=CGI_10007759; scaffold218 GLEAN mRNA 21641 28379 1 + . ID=CGI_10007760; scaffold218 GLEAN mRNA 35887 42789 0.890688 - . ID=CGI_10007761; scaffold218 TRF Tandem_Repeat 39668 39702 52 + . . scaffold218 GLEAN promoter 42790 43789 0.890688 - . ID=CGI_10007761; scaffold218 TRF Tandem_Repeat 43189 43384 114 + . . scaffold218 WUBlastX LINE_RTE-BovB 44887 44973 30 - . . scaffold218 WUBlastX LINE_RTE-BovB 44914 45210 37 - . . scaffold218 WUBlastX LINE_RTE-BovB 45022 45219 60 - . . scaffold218 WUBlastX LINE_RTE-BovB 45049 45210 72 - . . scaffold218 GLEAN promoter 82327 83326 0.614409 + . ID=CGI_10007762; scaffold218 GLEAN mRNA 83327 87595 0.614409 + . ID=CGI_10007762; scaffold218 TRF Tandem_Repeat 86859 86901 86 + . . scaffold218 GLEAN mRNA 90525 93512 0.593381 - . ID=CGI_10007763; scaffold218 GLEAN promoter 93513 94512 0.593381 - . ID=CGI_10007763; scaffold218 TRF Tandem_Repeat 95951 95983 66 + . . scaffold218 GLEAN mRNA 100202 136677 0.658717 - . ID=CGI_10007764; scaffold218 GLEAN promoter 106983 107982 0.998821 + . ID=CGI_10007765; scaffold218 GLEAN mRNA 107983 109901 0.998821 + . ID=CGI_10007765; scaffold218 TRF Tandem_Repeat 108950 109002 70 + . . scaffold218 TRF Tandem_Repeat 108950 109002 70 + . . scaffold218 GLEAN promoter 114541 115540 1 + . ID=CGI_10007766; scaffold218 GLEAN mRNA 115541 117195 1 + . ID=CGI_10007766; scaffold218 GLEAN promoter 120598 121597 1 + . ID=CGI_10007767; scaffold218 GLEAN mRNA 121598 126083 1 + . ID=CGI_10007767; scaffold218 TRF Tandem_Repeat 127020 127366 464 + . . scaffold218 TRF Tandem_Repeat 127022 127366 384 + . . scaffold218 TRF Tandem_Repeat 127022 127366 384 + . . scaffold218 TRF Tandem_Repeat 128011 128398 488 + . . scaffold218 TRF Tandem_Repeat 128011 128398 488 + . . scaffold218 TRF Tandem_Repeat 128011 128398 488 + . . scaffold218 TRF Tandem_Repeat 131244 131473 262 + . . scaffold218 TRF Tandem_Repeat 131346 131446 66 + . . scaffold218 GLEAN promoter 136678 137677 0.658717 - . ID=CGI_10007764; scaffold218 TRF Tandem_Repeat 138167 138261 190 + . . scaffold218 TRF Tandem_Repeat 138870 138913 88 + . . scaffold218 TRF Tandem_Repeat 148858 148918 86 + . . scaffold218 TRF Tandem_Repeat 150110 150148 78 + . . scaffold218 GLEAN promoter 163325 164324 0.673893 + . ID=CGI_10007768; scaffold218 GLEAN mRNA 164325 178342 0.673893 + . ID=CGI_10007768; scaffold218 TRF Tandem_Repeat 182957 183006 73 + . . scaffold218 GLEAN mRNA 184936 189747 0.986882 - . ID=CGI_10007769; scaffold218 GLEAN promoter 189748 190698 0.986882 - . ID=CGI_10007769; scaffold219 TRF Tandem_Repeat 6345 7310 1001 + . . scaffold219 WUBlastX DNA_Harbinger 9999 10436 148 + . . scaffold219 WUBlastX DNA_Harbinger 10029 10400 179 + . . scaffold219 WUBlastX DNA_Harbinger 11179 11394 66 - . . scaffold219 WUBlastX DNA_Harbinger 11393 11905 368 - . . scaffold219 WUBlastX DNA_Harbinger 11926 12147 135 - . . scaffold219 TRF Tandem_Repeat 15164 15230 80 + . . scaffold219 WUBlastX LTR_Gypsy 17167 17844 44 + . . scaffold219 WUBlastX LTR_Gypsy 17347 18093 173 + . . scaffold219 TRF Tandem_Repeat 23263 23301 51 + . . scaffold219 GLEAN promoter 30036 31035 0.497292 + . ID=CGI_10016613; scaffold219 TRF Tandem_Repeat 30379 30421 86 + . . scaffold219 GLEAN mRNA 31036 36051 0.497292 + . ID=CGI_10016613; scaffold219 TRF Tandem_Repeat 47988 48044 114 + . . scaffold219 WUBlastX LINE_L1-Tx1 58869 59060 22 + . . scaffold219 WUBlastX LINE_L1-Tx1 59666 60394 627 + . . scaffold219 WUBlastX LINE_L1 59963 60613 181 + . . scaffold219 TRF Tandem_Repeat 67278 68175 1180 + . . scaffold219 TRF Tandem_Repeat 91298 91366 138 + . . scaffold219 TRF Tandem_Repeat 91693 91761 138 + . . scaffold219 WUBlastX LTR_DIRS 120827 121477 77 + . . scaffold219 WUBlastX LTR_DIRS 121504 121794 57 + . . scaffold219 WUBlastX LTR_DIRS 121832 122101 71 + . . scaffold219 WUBlastX LTR_DIRS 122523 122720 62 + . . scaffold219 WUBlastX LTR_DIRS 122671 123045 127 + . . scaffold219 WUBlastX LTR_DIRS? 123188 123292 75 + . . scaffold219 WUBlastX LTR_DIRS 123191 123322 28 + . . scaffold219 TRF Tandem_Repeat 123491 123588 97 + . . scaffold219 TRF Tandem_Repeat 123751 123874 151 + . . scaffold219 GLEAN mRNA 124764 139591 0.613723 - . ID=CGI_10016614; scaffold219 WUBlastX LINE_L1-Tx1 129251 129643 77 + . . scaffold219 WUBlastX LINE_L1-Tx1 129332 129646 161 + . . scaffold219 WUBlastX LINE_L1-Tx1 129338 130081 95 + . . scaffold219 WUBlastX LINE_L1-Tx1 130093 131172 310 + . . scaffold219 WUBlastX LINE_R2 130651 131295 88 + . . scaffold219 WUBlastX LINE_L1 131870 131938 26 + . . scaffold219 WUBlastX LINE_L1 131962 132126 28 + . . scaffold219 WUBlastX LINE_L1-Tx1 132001 132138 37 + . . scaffold219 WUBlastX LINE_L1-Tx1 132108 132377 119 + . . scaffold219 WUBlastX LINE_L1-Tx1 132111 132458 72 + . . scaffold219 WUBlastX LINE_L1-Tx1 132440 132853 30 + . . scaffold219 GLEAN promoter 139592 140591 0.613723 - . ID=CGI_10016614; scaffold219 TRF Tandem_Repeat 148162 148217 58 + . . scaffold219 GLEAN promoter 151931 152930 0.964707 + . ID=CGI_10016615; scaffold219 GLEAN mRNA 152931 155339 0.964707 + . ID=CGI_10016615; scaffold219 TRF Tandem_Repeat 155742 155776 70 + . . scaffold219 GLEAN promoter 156235 157234 0.99428 + . ID=CGI_10016616; scaffold219 GLEAN mRNA 157235 158050 0.99428 + . ID=CGI_10016616; scaffold219 TRF Tandem_Repeat 158341 158390 64 + . . scaffold219 GLEAN mRNA 167698 168024 0.999984 - . ID=CGI_10016617; scaffold219 GLEAN promoter 168025 169024 0.999984 - . ID=CGI_10016617; scaffold219 WUBlastX LINE_L1-Tx1 168103 168534 80 - . . scaffold219 WUBlastX LINE_L1-Tx1 168181 168540 98 - . . scaffold219 GLEAN promoter 172029 173028 0.991296 + . ID=CGI_10016618; scaffold219 GLEAN mRNA 173029 217754 0.991296 + . ID=CGI_10016618; scaffold219 TRF Tandem_Repeat 177875 177918 52 + . . scaffold219 TRF Tandem_Repeat 204367 204410 70 + . . scaffold219 TRF Tandem_Repeat 204380 204413 50 + . . scaffold219 TRF Tandem_Repeat 208766 209591 1119 + . . scaffold219 TRF Tandem_Repeat 212530 214254 2035 + . . scaffold219 GLEAN mRNA 218437 221981 0.614327 - . ID=CGI_10016619; scaffold219 TRF Tandem_Repeat 221187 221254 91 + . . scaffold219 GLEAN promoter 221236 222235 1 + . ID=CGI_10016620; scaffold219 GLEAN promoter 221982 222981 0.614327 - . ID=CGI_10016619; scaffold219 GLEAN mRNA 222236 230297 1 + . ID=CGI_10016620; scaffold219 TRF Tandem_Repeat 226830 228486 1669 + . . scaffold219 GLEAN mRNA 233554 238746 0.702385 - . ID=CGI_10016621; scaffold219 GLEAN promoter 238010 239009 0.999949 + . ID=CGI_10016622; scaffold219 GLEAN promoter 238747 239746 0.702385 - . ID=CGI_10016621; scaffold219 GLEAN mRNA 239010 254476 0.999949 + . ID=CGI_10016622; scaffold219 TRF Tandem_Repeat 251545 252227 956 + . . scaffold219 GLEAN mRNA 254871 260931 0.995712 - . ID=CGI_10016623; scaffold219 TRF Tandem_Repeat 259588 259822 328 + . . scaffold219 GLEAN promoter 260932 261931 0.995712 - . ID=CGI_10016623; scaffold219 GLEAN promoter 262830 263829 1 + . ID=CGI_10016624; scaffold219 GLEAN mRNA 263830 264216 1 + . ID=CGI_10016624; scaffold219 GLEAN mRNA 264466 269335 0.99342 - . ID=CGI_10016625; scaffold219 GLEAN promoter 269336 270335 0.99342 - . ID=CGI_10016625; scaffold219 TRF Tandem_Repeat 269408 269463 112 + . . scaffold219 TRF Tandem_Repeat 271012 271045 50 + . . scaffold219 GLEAN promoter 271369 272368 0.999676 + . ID=CGI_10016626; scaffold219 GLEAN mRNA 272369 275739 0.999676 + . ID=CGI_10016626; scaffold219 GLEAN promoter 277447 278446 0.999676 + . ID=CGI_10016627; scaffold219 GLEAN mRNA 278447 285444 0.999676 + . ID=CGI_10016627; scaffold219 GLEAN mRNA 287966 300533 0.843729 - . ID=CGI_10016628; scaffold219 WUBlastX LINE_RTE-X 291701 291937 68 + . . scaffold219 TRF Tandem_Repeat 296749 296777 58 + . . scaffold219 GLEAN promoter 299841 300840 0.999977 + . ID=CGI_10016629; scaffold219 GLEAN promoter 300534 301533 0.843729 - . ID=CGI_10016628; scaffold219 GLEAN mRNA 300841 303913 0.999977 + . ID=CGI_10016629; scaffold219 GLEAN promoter 304729 305728 0.999977 + . ID=CGI_10016630; scaffold219 GLEAN mRNA 305729 311458 0.999977 + . ID=CGI_10016630; scaffold219 TRF Tandem_Repeat 307489 308621 1648 + . . scaffold219 GLEAN mRNA 317525 333185 0.99454 - . ID=CGI_10016631; scaffold219 TRF Tandem_Repeat 331188 331224 74 + . . scaffold219 GLEAN promoter 333186 334185 0.99454 - . ID=CGI_10016631; scaffold219 TRF Tandem_Repeat 337669 337754 163 + . . scaffold219 TRF Tandem_Repeat 345529 345597 129 + . . scaffold219 TRF Tandem_Repeat 354056 354655 481 + . . scaffold219 TRF Tandem_Repeat 354234 354655 580 + . . scaffold219 TRF Tandem_Repeat 354234 354655 536 + . . scaffold219 TRF Tandem_Repeat 355829 356268 578 + . . scaffold219 TRF Tandem_Repeat 355829 356268 551 + . . scaffold219 TRF Tandem_Repeat 356389 356549 158 + . . scaffold219 TRF Tandem_Repeat 361001 361036 72 + . . scaffold219 TRF Tandem_Repeat 362994 363040 94 + . . scaffold219 GLEAN promoter 364814 365813 0.999676 + . ID=CGI_10016632; scaffold219 GLEAN mRNA 365814 371633 0.999676 + . ID=CGI_10016632; scaffold219 TRF Tandem_Repeat 371266 371322 114 + . . scaffold219 TRF Tandem_Repeat 378817 378855 51 + . . scaffold219 TRF Tandem_Repeat 379475 379644 313 + . . scaffold219 GLEAN promoter 384944 385943 1 + . ID=CGI_10016633; scaffold219 GLEAN mRNA 385944 391641 1 + . ID=CGI_10016633; scaffold219 TRF Tandem_Repeat 388204 388256 106 + . . scaffold219 TRF Tandem_Repeat 394469 394513 90 + . . scaffold219 WUBlastX LINE_Proto2 398291 398500 70 + . . scaffold219 TRF Tandem_Repeat 398651 398755 76 + . . scaffold219 TRF Tandem_Repeat 398685 398755 88 + . . scaffold219 WUBlastX LINE_RTE-BovB 399766 400842 170 + . . scaffold219 WUBlastX LINE_RTE-X 399943 402084 460 + . . scaffold219 TRF Tandem_Repeat 402611 402668 98 + . . scaffold219 TRF Tandem_Repeat 419890 420043 281 + . . scaffold219 WUBlastX DNA_hAT-Tip100 431724 432554 114 + . . scaffold219 WUBlastX DNA_hAT-Tip100 431907 433376 300 + . . scaffold219 WUBlastX DNA_hAT-Tip100 433206 433433 94 + . . scaffold219 GLEAN promoter 436400 437399 1 + . ID=CGI_10016634; scaffold219 GLEAN mRNA 437400 440099 1 + . ID=CGI_10016634; scaffold219 TRF Tandem_Repeat 441189 441523 546 + . . scaffold219 TRF Tandem_Repeat 452658 452714 114 + . . scaffold219 GLEAN mRNA 460519 461463 0.51175 - . ID=CGI_10016635; scaffold219 GLEAN promoter 461464 462463 0.51175 - . ID=CGI_10016635; scaffold219 GLEAN mRNA 461983 471885 0.44939 - . ID=CGI_10016636; scaffold219 GLEAN promoter 471886 472694 0.44939 - . ID=CGI_10016636; scaffold21978 TRF Tandem_Repeat 356 466 159 + . . scaffold21978 WUBlastX LINE_L1 1505 1570 33 + . . scaffold21998 WUBlastX DNA_TcMar-Tc1 74 820 198 - . . scaffold21998 WUBlastX DNA_TcMar-Tc1 74 661 210 - . . scaffold22 WUBlastX LINE_L1 1662 2258 24 - . . scaffold22 WUBlastX LINE_L1-Tx1 1824 2258 197 - . . scaffold22 WUBlastX LINE_L1-Tx1 1923 2255 240 - . . scaffold22 WUBlastX LINE_L1-Tx1 2258 2410 108 - . . scaffold22 WUBlastX LINE_L1 2258 2467 75 - . . scaffold22 WUBlastX LINE_L1 2264 2521 26 - . . scaffold22 WUBlastX LINE_L1 2636 2698 21 - . . scaffold22 GLEAN promoter 7578 8577 0.999464 + . ID=CGI_10028822; scaffold22 GLEAN mRNA 8578 16105 0.999464 + . ID=CGI_10028822; scaffold22 TRF Tandem_Repeat 13373 13436 50 + . . scaffold22 TRF Tandem_Repeat 13373 13442 63 + . . scaffold22 TRF Tandem_Repeat 13373 13442 72 + . . scaffold22 TRF Tandem_Repeat 13376 13437 52 + . . scaffold22 GLEAN promoter 18007 19006 1 + . ID=CGI_10028823; scaffold22 GLEAN mRNA 19007 20126 1 + . ID=CGI_10028823; scaffold22 GLEAN promoter 25310 26309 0.999348 + . ID=CGI_10028824; scaffold22 GLEAN mRNA 26310 46524 0.999348 + . ID=CGI_10028824; scaffold22 TRF Tandem_Repeat 33043 33067 50 + . . scaffold22 TRF Tandem_Repeat 58346 58429 141 + . . scaffold22 TRF Tandem_Repeat 61900 62662 1044 + . . scaffold22 GLEAN mRNA 65005 75021 0.801532 - . ID=CGI_10028825; scaffold22 GLEAN promoter 69737 70736 0.617943 + . ID=CGI_10028826; scaffold22 GLEAN mRNA 70737 70937 0.617943 + . ID=CGI_10028826; scaffold22 TRF Tandem_Repeat 71576 71625 100 + . . scaffold22 TRF Tandem_Repeat 73016 73069 108 + . . scaffold22 GLEAN promoter 75022 76021 0.801532 - . ID=CGI_10028825; scaffold22 TRF Tandem_Repeat 80920 80980 50 + . . scaffold22 TRF Tandem_Repeat 80945 80977 50 + . . scaffold22 TRF Tandem_Repeat 82243 82268 52 + . . scaffold22 GLEAN promoter 86774 87773 0.999515 + . ID=CGI_10028827; scaffold22 GLEAN mRNA 87774 88582 0.999515 + . ID=CGI_10028827; scaffold22 GLEAN mRNA 89502 123774 0.856288 - . ID=CGI_10028828; scaffold22 WUBlastX DNA_TcMar-Marin 90329 90520 51 + . . scaffold22 WUBlastX DNA_TcMar-Marin 90386 90583 63 + . . scaffold22 WUBlastX DNA_TcMar-Marin 90567 90803 69 + . . scaffold22 WUBlastX DNA_TcMar-Marin 90834 90995 21 + . . scaffold22 WUBlastX DNA_TcMar-Marin 90897 90992 27 + . . scaffold22 TRF Tandem_Repeat 105518 105692 98 + . . scaffold22 TRF Tandem_Repeat 106781 106990 161 + . . scaffold22 TRF Tandem_Repeat 106785 106993 188 + . . scaffold22 GLEAN promoter 123775 124774 0.856288 - . ID=CGI_10028828; scaffold22 GLEAN mRNA 124174 126057 0.999376 - . ID=CGI_10028829; scaffold22 GLEAN promoter 126058 127057 0.999376 - . ID=CGI_10028829; scaffold22 GLEAN mRNA 134433 152881 1 - . ID=CGI_10028830; scaffold22 TRF Tandem_Repeat 136184 136429 156 + . . scaffold22 TRF Tandem_Repeat 139884 140069 264 + . . scaffold22 TRF Tandem_Repeat 140070 140395 575 + . . scaffold22 TRF Tandem_Repeat 148300 148342 59 + . . scaffold22 TRF Tandem_Repeat 151312 151357 67 + . . scaffold22 GLEAN promoter 152882 153881 1 - . ID=CGI_10028830; scaffold22 GLEAN promoter 156108 157107 0.71876 + . ID=CGI_10028831; scaffold22 GLEAN mRNA 157108 183005 0.71876 + . ID=CGI_10028831; scaffold22 TRF Tandem_Repeat 163424 163497 93 + . . scaffold22 TRF Tandem_Repeat 163424 163498 70 + . . scaffold22 TRF Tandem_Repeat 163425 163501 88 + . . scaffold22 TRF Tandem_Repeat 166105 166160 51 + . . scaffold22 WUBlastX DNA_Merlin 168185 169081 353 + . . scaffold22 TRF Tandem_Repeat 171801 171825 50 + . . scaffold22 WUBlastX LTR_Pao 181548 182369 24 + . . scaffold22 GLEAN mRNA 184430 194476 0.987314 - . ID=CGI_10028832; scaffold22 TRF Tandem_Repeat 187062 187349 531 + . . scaffold22 TRF Tandem_Repeat 187887 188005 78 + . . scaffold22 TRF Tandem_Repeat 190339 190419 110 + . . scaffold22 TRF Tandem_Repeat 190961 191101 120 + . . scaffold22 TRF Tandem_Repeat 192089 192201 75 + . . scaffold22 TRF Tandem_Repeat 192609 192729 217 + . . scaffold22 GLEAN promoter 193378 194377 0.997704 + . ID=CGI_10028833; scaffold22 GLEAN mRNA 194378 194903 0.997704 + . ID=CGI_10028833; scaffold22 GLEAN promoter 194477 195476 0.987314 - . ID=CGI_10028832; scaffold22 GLEAN promoter 195145 196144 1 + . ID=CGI_10028834; scaffold22 GLEAN mRNA 196145 201753 1 + . ID=CGI_10028834; scaffold22 TRF Tandem_Repeat 198790 199574 1245 + . . scaffold22 TRF Tandem_Repeat 198790 199574 1150 + . . scaffold22 TRF Tandem_Repeat 199566 199604 78 + . . scaffold22 TRF Tandem_Repeat 199594 199819 229 + . . scaffold22 WUBlastX DNA_hAT-Tip100 202367 202702 71 + . . scaffold22 WUBlastX DNA_hAT-Tip100 202430 202702 77 + . . scaffold22 WUBlastX DNA_hAT-Tip100 202484 202717 169 + . . scaffold22 WUBlastX DNA_hAT-Tip100 202505 202834 80 + . . scaffold22 GLEAN promoter 202798 203797 0.999286 + . ID=CGI_10028835; scaffold22 GLEAN mRNA 203798 218589 0.999286 + . ID=CGI_10028835; scaffold22 TRF Tandem_Repeat 208359 208402 61 + . . scaffold22 TRF Tandem_Repeat 208360 208398 51 + . . scaffold22 TRF Tandem_Repeat 208410 209066 889 + . . scaffold22 TRF Tandem_Repeat 211241 211505 449 + . . scaffold22 TRF Tandem_Repeat 211356 211482 64 + . . scaffold22 TRF Tandem_Repeat 211380 211504 56 + . . scaffold22 TRF Tandem_Repeat 213213 213710 978 + . . scaffold22 TRF Tandem_Repeat 216481 216507 54 + . . scaffold22 GLEAN mRNA 218596 220274 0.999922 - . ID=CGI_10028836; scaffold22 TRF Tandem_Repeat 219499 219737 253 + . . scaffold22 GLEAN promoter 220275 221274 0.999922 - . ID=CGI_10028836; scaffold22 TRF Tandem_Repeat 221301 221345 63 + . . scaffold22 TRF Tandem_Repeat 229038 229086 73 + . . scaffold22 WUBlastX DNA_TcMar-Marin 229544 229723 54 + . . scaffold22 WUBlastX DNA_TcMar-Tc1 229586 230350 131 + . . scaffold22 TRF Tandem_Repeat 230692 230742 102 + . . scaffold22 TRF Tandem_Repeat 235349 235388 57 + . . scaffold22 TRF Tandem_Repeat 239267 239476 171 + . . scaffold22 WUBlastX LINE_RTE-X 242683 243009 112 - . . scaffold22 WUBlastX LINE_RTE-X 242713 243132 78 - . . scaffold22 WUBlastX LINE_RTE-X 242809 243060 149 - . . scaffold22 WUBlastX LINE_RTE-X 243188 243451 124 - . . scaffold22 WUBlastX LINE_RTE-X 243456 243494 22 - . . scaffold22 TRF Tandem_Repeat 254044 254092 98 + . . scaffold22 GLEAN mRNA 255134 258709 1 - . ID=CGI_10028837; scaffold22 TRF Tandem_Repeat 255485 255593 175 + . . scaffold22 GLEAN promoter 258710 259709 1 - . ID=CGI_10028837; scaffold22 GLEAN mRNA 264482 280480 0.644868 - . ID=CGI_10028838; scaffold22 WUBlastX LINE_L1-Tx1 271306 272304 179 + . . scaffold22 GLEAN promoter 280481 281480 0.644868 - . ID=CGI_10028838; scaffold22 GLEAN mRNA 295347 297930 0.889918 - . ID=CGI_10028839; scaffold22 GLEAN promoter 297931 298930 0.889918 - . ID=CGI_10028839; scaffold22 GLEAN promoter 299614 300613 0.999999 + . ID=CGI_10028840; scaffold22 GLEAN mRNA 300614 309843 0.999999 + . ID=CGI_10028840; scaffold22 TRF Tandem_Repeat 302305 302351 85 + . . scaffold22 GLEAN mRNA 311472 312194 0.999983 - . ID=CGI_10028841; scaffold22 GLEAN promoter 312195 313194 0.999983 - . ID=CGI_10028841; scaffold22 GLEAN mRNA 315250 316521 0.999572 - . ID=CGI_10028842; scaffold22 GLEAN promoter 316522 317521 0.999572 - . ID=CGI_10028842; scaffold22 TRF Tandem_Repeat 317697 317746 91 + . . scaffold22 TRF Tandem_Repeat 323041 323075 61 + . . scaffold22 TRF Tandem_Repeat 323346 323384 60 + . . scaffold22 TRF Tandem_Repeat 324395 324434 80 + . . scaffold22 GLEAN mRNA 325004 332539 1 - . ID=CGI_10028843; scaffold22 TRF Tandem_Repeat 329042 329075 68 + . . scaffold22 GLEAN promoter 332540 333539 1 - . ID=CGI_10028843; scaffold22 GLEAN mRNA 337554 348721 1 - . ID=CGI_10028844; scaffold22 TRF Tandem_Repeat 339494 339623 84 + . . scaffold22 TRF Tandem_Repeat 339539 339685 64 + . . scaffold22 GLEAN promoter 348722 349721 1 - . ID=CGI_10028844; scaffold22 GLEAN promoter 354567 355566 1 + . ID=CGI_10028845; scaffold22 GLEAN mRNA 355567 358835 1 + . ID=CGI_10028845; scaffold22 TRF Tandem_Repeat 356233 356297 74 + . . scaffold22 GLEAN mRNA 361127 366025 1 - . ID=CGI_10028846; scaffold22 GLEAN promoter 362448 363447 0.982418 + . ID=CGI_10028847; scaffold22 GLEAN mRNA 363448 382516 0.982418 + . ID=CGI_10028847; scaffold22 GLEAN promoter 366026 367025 1 - . ID=CGI_10028846; scaffold22 GLEAN mRNA 369695 370258 0.99587 - . ID=CGI_10028848; scaffold22 GLEAN promoter 370259 371258 0.99587 - . ID=CGI_10028848; scaffold22 TRF Tandem_Repeat 370375 370464 58 + . . scaffold22 GLEAN promoter 381634 382633 0.826654 + . ID=CGI_10028849; scaffold22 GLEAN mRNA 382634 415748 0.826654 + . ID=CGI_10028849; scaffold22 TRF Tandem_Repeat 387530 387705 275 + . . scaffold22 TRF Tandem_Repeat 402269 403064 1001 + . . scaffold22 TRF Tandem_Repeat 404127 404154 56 + . . scaffold22 GLEAN mRNA 404236 404409 0.618241 - . ID=CGI_10028850; scaffold22 GLEAN promoter 404410 405409 0.618241 - . ID=CGI_10028850; scaffold22 TRF Tandem_Repeat 404458 404506 98 + . . scaffold22 GLEAN promoter 415259 416258 1 + . ID=CGI_10028851; scaffold22 GLEAN mRNA 416259 416654 1 + . ID=CGI_10028851; scaffold22 TRF Tandem_Repeat 417560 417586 54 + . . scaffold22 GLEAN mRNA 421308 425249 0.996492 - . ID=CGI_10028852; scaffold22 GLEAN promoter 425250 426249 0.996492 - . ID=CGI_10028852; scaffold22 GLEAN mRNA 448793 461598 0.499919 - . ID=CGI_10028854; scaffold22 TRF Tandem_Repeat 452548 452585 76 + . . scaffold22 GLEAN promoter 461599 462598 0.499919 - . ID=CGI_10028854; scaffold22 TRF Tandem_Repeat 462497 462543 94 + . . scaffold22 TRF Tandem_Repeat 463658 463722 130 + . . scaffold22 GLEAN promoter 464315 465314 1 + . ID=CGI_10028855; scaffold22 GLEAN mRNA 465315 478771 1 + . ID=CGI_10028855; scaffold22 GLEAN mRNA 467487 478328 0.904927 - . ID=CGI_10028856; scaffold22 GLEAN promoter 478329 479328 0.904927 - . ID=CGI_10028856; scaffold22 WUBlastX LINE_L2 481219 481476 47 + . . scaffold22 TRF Tandem_Repeat 482129 482169 82 + . . scaffold22 TRF Tandem_Repeat 483982 484034 81 + . . scaffold22 GLEAN promoter 489711 490710 0.640664 + . ID=CGI_10028857; scaffold22 GLEAN mRNA 490711 518592 0.640664 + . ID=CGI_10028857; scaffold22 TRF Tandem_Repeat 492351 492675 321 + . . scaffold22 TRF Tandem_Repeat 507168 507214 76 + . . scaffold22 TRF Tandem_Repeat 507375 507399 50 + . . scaffold22 TRF Tandem_Repeat 518801 518855 110 + . . scaffold22 GLEAN mRNA 520504 522717 1 - . ID=CGI_10028858; scaffold22 GLEAN promoter 522718 523717 1 - . ID=CGI_10028858; scaffold22 GLEAN promoter 523664 524663 0.583993 + . ID=CGI_10028859; scaffold22 GLEAN mRNA 524664 550709 0.583993 + . ID=CGI_10028859; scaffold22 GLEAN mRNA 545837 546792 1 - . ID=CGI_10028860; scaffold22 GLEAN promoter 546793 547792 1 - . ID=CGI_10028860; scaffold22 GLEAN mRNA 554983 555225 0.558395 - . ID=CGI_10028861; scaffold22 GLEAN promoter 555226 556225 0.558395 - . ID=CGI_10028861; scaffold22 GLEAN mRNA 555251 561584 0.999676 - . ID=CGI_10028862; scaffold22 GLEAN promoter 561585 562584 0.999676 - . ID=CGI_10028862; scaffold22 GLEAN mRNA 563286 564482 0.531351 - . ID=CGI_10028863; scaffold22 GLEAN promoter 564455 565454 0.969978 + . ID=CGI_10028864; scaffold22 GLEAN promoter 564483 565482 0.531351 - . ID=CGI_10028863; scaffold22 GLEAN mRNA 565455 568056 0.969978 + . ID=CGI_10028864; scaffold22 GLEAN promoter 569387 570386 0.541631 + . ID=CGI_10028865; scaffold22 GLEAN mRNA 570387 574270 0.541631 + . ID=CGI_10028865; scaffold22 TRF Tandem_Repeat 574544 574622 151 + . . scaffold22 TRF Tandem_Repeat 575008 575044 74 + . . scaffold22 TRF Tandem_Repeat 585422 585463 84 + . . scaffold22 WUBlastX LINE_L2 587451 587531 20 + . . scaffold22 WUBlastX LINE_L1 587891 587956 22 + . . scaffold22 WUBlastX LINE_L1-Tx1 587926 588738 434 + . . scaffold22 WUBlastX LINE_L1-Tx1 588572 589627 151 + . . scaffold22 WUBlastX LINE_L1 589878 590153 36 + . . scaffold22 WUBlastX LINE_L1 589980 590150 52 + . . scaffold22 WUBlastX LINE_L1-Tx1 590083 590445 48 + . . scaffold22 TRF Tandem_Repeat 591609 592508 1321 + . . scaffold22 TRF Tandem_Repeat 591609 592503 1047 + . . scaffold22 GLEAN promoter 591709 592708 0.999372 + . ID=CGI_10028866; scaffold22 GLEAN mRNA 592709 593032 0.999372 + . ID=CGI_10028866; scaffold22 TRF Tandem_Repeat 608757 608792 72 + . . scaffold22 TRF Tandem_Repeat 611499 612628 1535 + . . scaffold22 TRF Tandem_Repeat 612801 612826 52 + . . scaffold22 WUBlastX DNA_TcMar-Tc1 615477 615719 95 + . . scaffold22 WUBlastX DNA_TcMar-Tc1 615483 615821 59 + . . scaffold22 WUBlastX DNA_TcMar-Tc1 615824 616303 148 + . . scaffold22 WUBlastX DNA_TcMar-Tc1 616199 616342 63 + . . scaffold22 WUBlastX DNA_TcMar-Tc1 616329 616469 53 + . . scaffold22 GLEAN mRNA 618837 623538 0.999674 - . ID=CGI_10028867; scaffold22 GLEAN promoter 623539 624538 0.999674 - . ID=CGI_10028867; scaffold22 TRF Tandem_Repeat 631692 631932 437 + . . scaffold22 TRF Tandem_Repeat 644812 644865 99 + . . scaffold22 GLEAN mRNA 647412 663312 0.981305 - . ID=CGI_10028868; scaffold22 TRF Tandem_Repeat 657452 657482 62 + . . scaffold22 GLEAN promoter 663313 664312 0.981305 - . ID=CGI_10028868; scaffold22 TRF Tandem_Repeat 669710 669838 168 + . . scaffold22 TRF Tandem_Repeat 670246 670333 77 + . . scaffold22 WUBlastX LINE_L1-Tx1 670490 670765 94 + . . scaffold22 WUBlastX LINE_L1-Tx1 670788 671108 29 + . . scaffold22 TRF Tandem_Repeat 672839 672939 89 + . . scaffold22 TRF Tandem_Repeat 680560 680598 51 + . . scaffold22 TRF Tandem_Repeat 690047 690101 110 + . . scaffold22 GLEAN mRNA 692262 701602 0.999578 - . ID=CGI_10028869; scaffold22 GLEAN promoter 701603 702602 0.999578 - . ID=CGI_10028869; scaffold22 GLEAN promoter 705489 706488 0.999675 + . ID=CGI_10028870; scaffold22 GLEAN mRNA 706489 715748 0.999675 + . ID=CGI_10028870; scaffold22 GLEAN mRNA 724097 732086 1 - . ID=CGI_10028871; scaffold22 TRF Tandem_Repeat 727908 727944 56 + . . scaffold22 GLEAN promoter 731644 732643 0.999391 + . ID=CGI_10028872; scaffold22 GLEAN promoter 732087 733086 1 - . ID=CGI_10028871; scaffold22 GLEAN mRNA 732644 737887 0.999391 + . ID=CGI_10028872; scaffold22 GLEAN mRNA 741599 746366 1 - . ID=CGI_10028873; scaffold22 GLEAN promoter 746367 747366 1 - . ID=CGI_10028873; scaffold22 TRF Tandem_Repeat 746848 746895 96 + . . scaffold22 TRF Tandem_Repeat 758446 758489 88 + . . scaffold22 TRF Tandem_Repeat 766552 766594 77 + . . scaffold22 TRF Tandem_Repeat 767131 767159 58 + . . scaffold22 TRF Tandem_Repeat 767226 767268 77 + . . scaffold22 TRF Tandem_Repeat 767805 767833 58 + . . scaffold22 GLEAN promoter 769303 770302 0.978569 + . ID=CGI_10028874; scaffold22 GLEAN mRNA 770303 771947 0.978569 + . ID=CGI_10028874; scaffold22 TRF Tandem_Repeat 771267 771306 80 + . . scaffold22 WUBlastX LINE_CR1 781678 781989 21 + . . scaffold22 WUBlastX LINE_RTE-X 781732 782889 572 + . . scaffold22 WUBlastX LINE_RTE-X 782889 783008 48 + . . scaffold22 WUBlastX LINE_RTE-X 782910 783008 56 + . . scaffold22 WUBlastX LINE_RTE-X 782913 783029 52 + . . scaffold22 WUBlastX LINE_I 783166 783219 23 + . . scaffold22 WUBlastX LTR_DIRS 783482 784759 510 - . . scaffold22 WUBlastX LTR_DIRS 784687 785103 130 - . . scaffold22 WUBlastX LTR_DIRS 785109 786101 596 - . . scaffold22 WUBlastX LTR_Gypsy 785319 786329 98 - . . scaffold22 WUBlastX LTR_DIRS 786280 787035 121 - . . scaffold22 TRF Tandem_Repeat 787772 787820 98 + . . scaffold22 WUBlastX LINE_Penelope 798758 799087 44 - . . scaffold22 WUBlastX LINE_L1 810048 810182 20 - . . scaffold22 WUBlastX LINE_L1-Tx1 810388 810825 46 - . . scaffold22 WUBlastX LINE_L1 810723 810980 63 - . . scaffold22 WUBlastX LINE_L1-Tx1 810807 810992 89 - . . scaffold22 WUBlastX LINE_L1-Tx1 810974 811264 107 - . . scaffold22 WUBlastX LINE_L1-Tx1 811279 811341 33 - . . scaffold22 WUBlastX LINE_L1-Tx1 811305 811595 57 + . . scaffold22 WUBlastX LINE_L1-Tx1 811344 811844 45 + . . scaffold22 TRF Tandem_Repeat 813152 813192 82 + . . scaffold22 TRF Tandem_Repeat 818982 819072 112 + . . scaffold22 TRF Tandem_Repeat 820105 820225 118 + . . scaffold22 TRF Tandem_Repeat 821210 821322 113 + . . scaffold22 TRF Tandem_Repeat 824906 824935 60 + . . scaffold22 GLEAN promoter 825672 826671 1 + . ID=CGI_10028875; scaffold22 TRF Tandem_Repeat 826391 826439 98 + . . scaffold22 GLEAN mRNA 826672 833586 1 + . ID=CGI_10028875; scaffold22 GLEAN mRNA 830205 830516 0.999372 - . ID=CGI_10028876; scaffold22 GLEAN promoter 830517 831516 0.999372 - . ID=CGI_10028876; scaffold22 GLEAN promoter 836198 837197 0.963598 + . ID=CGI_10028877; scaffold22 GLEAN mRNA 837198 841798 0.963598 + . ID=CGI_10028877; scaffold22 GLEAN promoter 841648 842647 0.964193 + . ID=CGI_10028878; scaffold22 GLEAN mRNA 842648 844709 0.964193 + . ID=CGI_10028878; scaffold22 GLEAN mRNA 846351 849634 1 - . ID=CGI_10028879; scaffold22 TRF Tandem_Repeat 849127 849175 98 + . . scaffold22 GLEAN promoter 849635 850634 1 - . ID=CGI_10028879; scaffold22 TRF Tandem_Repeat 851345 851419 150 + . . scaffold22 GLEAN promoter 851632 852631 0.996367 + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 852040 852090 102 + . . scaffold22 GLEAN mRNA 852632 884943 0.996367 + . ID=CGI_10028880; scaffold22 TRF Tandem_Repeat 860244 860282 51 + . . scaffold22 TRF Tandem_Repeat 861240 861279 53 + . . scaffold22 TRF Tandem_Repeat 864849 865895 1001 + . . scaffold22 TRF Tandem_Repeat 866413 867210 1069 + . . scaffold22 TRF Tandem_Repeat 866413 867210 1109 + . . scaffold22 TRF Tandem_Repeat 871484 871526 59 + . . scaffold22 WUBlastX LINE_RTE-X 882221 883114 106 - . . scaffold22 WUBlastX LINE_RTE-X 882347 883090 183 - . . scaffold22 GLEAN promoter 883998 884997 1 + . ID=CGI_10028881; scaffold22 GLEAN mRNA 884998 891323 1 + . ID=CGI_10028881; scaffold22 GLEAN mRNA 893607 914561 1 - . ID=CGI_10028882; scaffold22 TRF Tandem_Repeat 897800 897837 60 + . . scaffold22 GLEAN promoter 901344 902343 0.824202 + . ID=CGI_10028883; scaffold22 GLEAN mRNA 902344 920436 0.824202 + . ID=CGI_10028883; scaffold22 TRF Tandem_Repeat 905361 906230 1210 + . . scaffold22 TRF Tandem_Repeat 907182 907328 73 + . . scaffold22 TRF Tandem_Repeat 907244 907373 93 + . . scaffold22 TRF Tandem_Repeat 911763 912063 401 + . . scaffold22 GLEAN promoter 914562 915561 1 - . ID=CGI_10028882; scaffold22 TRF Tandem_Repeat 916444 916829 582 + . . scaffold22 TRF Tandem_Repeat 916446 916836 522 + . . scaffold22 GLEAN mRNA 924261 941065 0.999814 - . ID=CGI_10028884; scaffold22 WUBlastX LTR_Gypsy 930589 931887 1104 - . . scaffold22 WUBlastX LTR_Gypsy 931880 933208 1266 - . . scaffold22 WUBlastX LTR_Gypsy 933213 933512 292 - . . scaffold22 WUBlastX LTR_Gypsy 933494 933874 152 - . . scaffold22 WUBlastX LTR_Gypsy 933888 934400 280 - . . scaffold22 WUBlastX LTR_Gypsy 934158 934478 31 - . . scaffold22 WUBlastX LTR_Gypsy 934583 934807 53 - . . scaffold22 WUBlastX LTR_Gypsy 934730 935083 98 - . . scaffold22 TRF Tandem_Repeat 935125 935318 160 + . . scaffold22 TRF Tandem_Repeat 935126 935317 79 + . . scaffold22 WUBlastX LTR_Gypsy 935536 935907 229 - . . scaffold22 WUBlastX LTR_Gypsy 935539 936081 27 - . . scaffold22 GLEAN promoter 940585 941584 0.998475 + . ID=CGI_10028885; scaffold22 GLEAN promoter 941066 942065 0.999814 - . ID=CGI_10028884; scaffold22 GLEAN mRNA 941585 944355 0.998475 + . ID=CGI_10028885; scaffold22 TRF Tandem_Repeat 945540 945854 353 + . . scaffold22 WUBlastX LINE_RTE-X 947542 947871 55 + . . scaffold22 WUBlastX LINE_RTE-X 947599 948000 58 + . . scaffold22 WUBlastX LINE_RTE-X 947653 947868 71 + . . scaffold22 GLEAN mRNA 952415 954142 0.866433 - . ID=CGI_10028886; scaffold22 GLEAN promoter 954143 955142 0.866433 - . ID=CGI_10028886; scaffold22 GLEAN mRNA 972247 973470 0.531613 - . ID=CGI_10028887; scaffold22 GLEAN promoter 973471 974470 0.531613 - . ID=CGI_10028887; scaffold22 GLEAN mRNA 977756 980271 0.999586 - . ID=CGI_10028888; scaffold22 GLEAN promoter 980272 981271 0.999586 - . ID=CGI_10028888; scaffold22 TRF Tandem_Repeat 981027 981071 90 + . . scaffold22 TRF Tandem_Repeat 985634 985721 167 + . . scaffold22 TRF Tandem_Repeat 987592 987652 122 + . . scaffold22 TRF Tandem_Repeat 990393 990417 50 + . . scaffold22 TRF Tandem_Repeat 998709 998746 76 + . . scaffold22 GLEAN mRNA 1007155 1016074 0.999624 - . ID=CGI_10028889; scaffold22 TRF Tandem_Repeat 1007568 1007618 102 + . . scaffold22 GLEAN promoter 1016075 1017074 0.999624 - . ID=CGI_10028889; scaffold22 GLEAN promoter 1019162 1020161 0.733495 + . ID=CGI_10028890; scaffold22 GLEAN mRNA 1020162 1020419 0.733495 + . ID=CGI_10028890; scaffold22 GLEAN mRNA 1033733 1033915 0.618186 - . ID=CGI_10028891; scaffold22 GLEAN promoter 1033916 1034915 0.618186 - . ID=CGI_10028891; scaffold22 TRF Tandem_Repeat 1037023 1037073 102 + . . scaffold22 TRF Tandem_Repeat 1037451 1037499 98 + . . scaffold22 TRF Tandem_Repeat 1041331 1041375 90 + . . scaffold22 TRF Tandem_Repeat 1044339 1044369 62 + . . scaffold22 GLEAN mRNA 1046520 1047244 1 - . ID=CGI_10028892; scaffold22 GLEAN promoter 1047245 1048244 1 - . ID=CGI_10028892; scaffold22 TRF Tandem_Repeat 1049713 1049768 112 + . . scaffold22 GLEAN mRNA 1051162 1059061 1 - . ID=CGI_10028893; scaffold22 GLEAN promoter 1059062 1060061 1 - . ID=CGI_10028893; scaffold22 TRF Tandem_Repeat 1060790 1061577 949 + . . scaffold22 TRF Tandem_Repeat 1061748 1061786 60 + . . scaffold22 TRF Tandem_Repeat 1066205 1066288 71 + . . scaffold22 GLEAN promoter 1066415 1067414 0.983676 + . ID=CGI_10028894; scaffold22 TRF Tandem_Repeat 1067165 1067237 76 + . . scaffold22 GLEAN mRNA 1067415 1070706 0.983676 + . ID=CGI_10028894; scaffold22 TRF Tandem_Repeat 1069407 1069842 430 + . . scaffold22 TRF Tandem_Repeat 1069407 1069842 421 + . . scaffold22 TRF Tandem_Repeat 1069415 1069842 348 + . . scaffold22 TRF Tandem_Repeat 1070044 1070137 147 + . . scaffold22 GLEAN promoter 1071729 1072728 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1072156 1072617 52 + . . scaffold22 WUBlastX LTR_Pao 1072255 1072635 53 + . . scaffold22 WUBlastX LTR_Pao 1072258 1072725 32 + . . scaffold22 GLEAN mRNA 1072729 1078419 0.99991 + . ID=CGI_10028895; scaffold22 WUBlastX LTR_Pao 1072791 1073057 69 + . . scaffold22 WUBlastX LTR_Pao 1072854 1073057 69 + . . scaffold22 WUBlastX LTR_Pao 1073172 1073321 78 + . . scaffold22 WUBlastX LTR_Pao 1073340 1073468 41 + . . scaffold22 WUBlastX LTR_Pao 1073439 1073567 64 + . . scaffold22 WUBlastX LTR_Pao 1073448 1073597 51 + . . scaffold22 WUBlastX LTR_Pao 1073554 1073694 45 + . . scaffold22 WUBlastX LTR_Pao 1073744 1073971 76 + . . scaffold22 WUBlastX LTR_Pao 1073780 1074010 121 + . . scaffold22 WUBlastX LTR_Pao 1073807 1073998 154 + . . scaffold22 WUBlastX LTR_Pao 1074147 1074419 51 + . . scaffold22 WUBlastX LTR_Pao 1074443 1074496 25 + . . scaffold22 WUBlastX LTR_Pao 1074457 1074633 73 + . . scaffold22 WUBlastX LTR_Pao 1074496 1074633 81 + . . scaffold22 WUBlastX LTR_Pao 1074675 1074995 52 + . . scaffold22 WUBlastX LTR_Pao 1074783 1074995 83 + . . scaffold22 WUBlastX LTR_Pao 1074866 1075303 113 + . . scaffold22 WUBlastX LTR_Pao 1074950 1075342 216 + . . scaffold22 WUBlastX LINE_Penelope 1076206 1076580 23 + . . scaffold22 TRF Tandem_Repeat 1077787 1077838 63 + . . scaffold22 GLEAN mRNA 1079633 1088835 0.644932 - . ID=CGI_10028896; scaffold22 WUBlastX LINE_L1-Tx1 1081990 1082523 121 + . . scaffold22 WUBlastX LINE_L1-Tx1 1082330 1083010 79 + . . scaffold22 WUBlastX LINE_L1-Tx1 1082672 1082926 88 + . . scaffold22 WUBlastX LINE_L1-Tx1 1082672 1082869 103 + . . scaffold22 WUBlastX LINE_L1-Tx1 1082950 1083744 115 + . . scaffold22 WUBlastX LINE_L2 1083737 1085011 487 + . . scaffold22 WUBlastX LINE_L2 1083911 1084951 565 + . . scaffold22 WUBlastX LINE_L2 1085013 1085276 135 + . . scaffold22 WUBlastX LINE_L2 1085079 1085324 34 + . . scaffold22 GLEAN promoter 1088836 1089835 0.644932 - . ID=CGI_10028896; scaffold22 GLEAN mRNA 1089469 1092422 0.999572 - . ID=CGI_10028897; scaffold22 GLEAN promoter 1092423 1093422 0.999572 - . ID=CGI_10028897; scaffold22 TRF Tandem_Repeat 1092857 1092900 61 + . . scaffold22 TRF Tandem_Repeat 1093123 1093174 104 + . . scaffold22 WUBlastX LINE_L1-Tx1 1096936 1097250 60 - . . scaffold22 WUBlastX LINE_L1-Tx1 1096996 1097262 99 - . . scaffold22 WUBlastX LINE_L1 1098766 1098999 43 - . . scaffold22 WUBlastX LINE_L1 1098817 1098972 78 - . . scaffold22 WUBlastX LINE_L1-Tx1 1098954 1099541 138 - . . scaffold22 TRF Tandem_Repeat 1101974 1102018 90 + . . scaffold22 TRF Tandem_Repeat 1102252 1102323 144 + . . scaffold22 TRF Tandem_Repeat 1105830 1107115 1621 + . . scaffold22 TRF Tandem_Repeat 1105830 1107115 1585 + . . scaffold22 TRF Tandem_Repeat 1117683 1117745 126 + . . scaffold22 GLEAN promoter 1120658 1121657 0.933697 + . ID=CGI_10028898; scaffold22 GLEAN mRNA 1121658 1166105 0.933697 + . ID=CGI_10028898; scaffold22 TRF Tandem_Repeat 1124205 1124260 112 + . . scaffold22 TRF Tandem_Repeat 1130210 1130290 62 + . . scaffold22 TRF Tandem_Repeat 1132657 1132712 112 + . . scaffold22 TRF Tandem_Repeat 1136434 1136460 54 + . . scaffold22 TRF Tandem_Repeat 1136546 1136634 65 + . . scaffold22 TRF Tandem_Repeat 1136546 1136614 97 + . . scaffold22 WUBlastX LTR_Pao 1166488 1168707 1014 + . . scaffold22 WUBlastX LTR_Pao 1166968 1172142 4168 + . . scaffold22 GLEAN mRNA 1173592 1193519 0.999676 - . ID=CGI_10028900; scaffold22 TRF Tandem_Repeat 1177428 1177668 113 + . . scaffold22 TRF Tandem_Repeat 1177934 1178152 172 + . . scaffold22 TRF Tandem_Repeat 1186591 1186620 60 + . . scaffold22 TRF Tandem_Repeat 1192185 1192415 453 + . . scaffold22 GLEAN promoter 1193520 1194519 0.999676 - . ID=CGI_10028900; scaffold22 GLEAN promoter 1198166 1199165 0.999332 + . ID=CGI_10028901; scaffold22 TRF Tandem_Repeat 1198470 1198524 83 + . . scaffold22 GLEAN mRNA 1199166 1209013 0.999332 + . ID=CGI_10028901; scaffold22 TRF Tandem_Repeat 1202023 1202059 74 + . . scaffold22 GLEAN promoter 1213625 1214624 0.947052 + . ID=CGI_10028902; scaffold22 TRF Tandem_Repeat 1214155 1214271 135 + . . scaffold22 GLEAN mRNA 1214625 1237624 0.947052 + . ID=CGI_10028902; scaffold22 TRF Tandem_Repeat 1220708 1220755 96 + . . scaffold22 GLEAN mRNA 1248667 1250202 0.768021 - . ID=CGI_10028903; scaffold22 GLEAN promoter 1250203 1251202 0.768021 - . ID=CGI_10028903; scaffold22 TRF Tandem_Repeat 1262202 1262268 71 + . . scaffold22 GLEAN promoter 1266697 1267696 0.999985 + . ID=CGI_10028904; scaffold22 TRF Tandem_Repeat 1267007 1267060 108 + . . scaffold22 GLEAN mRNA 1267697 1269562 0.999985 + . ID=CGI_10028904; scaffold22 TRF Tandem_Repeat 1271273 1271303 62 + . . scaffold22 GLEAN mRNA 1279106 1307483 0.979343 - . ID=CGI_10028905; scaffold22 TRF Tandem_Repeat 1281978 1282054 57 + . . scaffold22 GLEAN promoter 1295873 1296872 0.541396 + . ID=CGI_10028906; scaffold22 GLEAN mRNA 1296873 1324907 0.541396 + . ID=CGI_10028906; scaffold22 GLEAN promoter 1307484 1308483 0.979343 - . ID=CGI_10028905; scaffold22 TRF Tandem_Repeat 1312793 1313259 580 + . . scaffold22 TRF Tandem_Repeat 1313666 1313891 283 + . . scaffold22 TRF Tandem_Repeat 1313891 1314454 620 + . . scaffold22 WUBlastX DNA_MuDR 1316335 1316706 56 + . . scaffold22 WUBlastX DNA_NOF 1316464 1316772 137 + . . scaffold22 WUBlastX DNA_NOF 1317043 1317144 58 + . . scaffold22 WUBlastX DNA_NOF 1317732 1317866 21 + . . scaffold22 TRF Tandem_Repeat 1318139 1318178 80 + . . scaffold22 WUBlastX DNA_NOF 1318312 1318968 52 + . . scaffold22 TRF Tandem_Repeat 1320837 1320863 54 + . . scaffold22 TRF Tandem_Repeat 1321342 1321419 133 + . . scaffold22 TRF Tandem_Repeat 1325638 1326807 1486 + . . scaffold22 TRF Tandem_Repeat 1325638 1326787 1643 + . . scaffold22 GLEAN promoter 1327997 1328996 0.702385 + . ID=CGI_10028907; scaffold22 TRF Tandem_Repeat 1328289 1328583 222 + . . scaffold22 TRF Tandem_Repeat 1328289 1328583 288 + . . scaffold22 GLEAN mRNA 1328997 1340703 0.702385 + . ID=CGI_10028907; scaffold22 TRF Tandem_Repeat 1341291 1343153 2494 + . . scaffold22 WUBlastX LINE_L1-Tx1 1344115 1344597 40 - . . scaffold22 WUBlastX LINE_L1-Tx1 1344824 1347295 1052 - . . scaffold22 WUBlastX LINE_CR1 1351854 1352318 26 - . . scaffold22 WUBlastX LINE_CR1-L2 1351926 1352339 82 - . . scaffold22 WUBlastX LINE_L2 1352318 1352590 55 - . . scaffold22 WUBlastX LINE_CR1 1352393 1352590 59 - . . scaffold22 GLEAN mRNA 1367368 1379024 0.878621 - . ID=CGI_10028908; scaffold22 GLEAN promoter 1368292 1369291 0.350572 + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1368741 1368765 50 + . . scaffold22 GLEAN mRNA 1369292 1381055 0.350572 + . ID=CGI_10028909; scaffold22 TRF Tandem_Repeat 1373200 1373249 50 + . . scaffold22 TRF Tandem_Repeat 1373333 1373718 97 + . . scaffold22 TRF Tandem_Repeat 1373333 1373661 128 + . . scaffold22 TRF Tandem_Repeat 1373383 1373472 62 + . . scaffold22 TRF Tandem_Repeat 1373397 1373470 69 + . . scaffold22 TRF Tandem_Repeat 1373398 1373466 52 + . . scaffold22 GLEAN promoter 1379025 1380024 0.878621 - . ID=CGI_10028908; scaffold22 TRF Tandem_Repeat 1382110 1382163 108 + . . scaffold22 TRF Tandem_Repeat 1382492 1382546 110 + . . scaffold22 GLEAN promoter 1383341 1384340 1 + . ID=CGI_10028910; scaffold22 GLEAN mRNA 1384341 1387568 1 + . ID=CGI_10028910; scaffold22 TRF Tandem_Repeat 1389151 1389312 153 + . . scaffold22 GLEAN mRNA 1389679 1404205 0.997818 - . ID=CGI_10028911; scaffold22 GLEAN promoter 1402975 1403974 0.545285 + . ID=CGI_10028912; scaffold22 GLEAN mRNA 1403975 1404139 0.545285 + . ID=CGI_10028912; scaffold22 GLEAN promoter 1404206 1405205 0.997818 - . ID=CGI_10028911; scaffold22 GLEAN mRNA 1405457 1426989 0.340444 - . ID=CGI_10028913; scaffold22 GLEAN promoter 1411571 1412570 0.843249 + . ID=CGI_10028914; scaffold22 GLEAN mRNA 1412571 1416122 0.843249 + . ID=CGI_10028914; scaffold22 GLEAN promoter 1426990 1427989 0.340444 - . ID=CGI_10028913; scaffold22 TRF Tandem_Repeat 1427259 1427322 110 + . . scaffold22 TRF Tandem_Repeat 1427535 1427603 138 + . . scaffold22 TRF Tandem_Repeat 1428423 1428480 116 + . . scaffold22 GLEAN promoter 1432235 1433234 0.431458 + . ID=CGI_10028915; scaffold22 GLEAN mRNA 1433235 1462478 0.431458 + . ID=CGI_10028915; scaffold22 TRF Tandem_Repeat 1447369 1448452 1875 + . . scaffold22 TRF Tandem_Repeat 1449199 1449692 855 + . . scaffold22 TRF Tandem_Repeat 1458170 1458491 500 + . . scaffold22 TRF Tandem_Repeat 1458796 1458864 129 + . . scaffold22 GLEAN promoter 1461661 1462660 0.933197 + . ID=CGI_10028916; scaffold22 GLEAN mRNA 1462661 1465461 0.933197 + . ID=CGI_10028916; scaffold22 TRF Tandem_Repeat 1464238 1464607 473 + . . scaffold22 TRF Tandem_Repeat 1464238 1464607 523 + . . scaffold22 GLEAN mRNA 1468323 1474027 1 - . ID=CGI_10028917; scaffold22 TRF Tandem_Repeat 1469407 1469446 80 + . . scaffold22 GLEAN promoter 1474028 1475027 1 - . ID=CGI_10028917; scaffold22 GLEAN promoter 1478049 1479048 0.805806 + . ID=CGI_10028918; scaffold22 GLEAN mRNA 1479049 1489206 0.805806 + . ID=CGI_10028918; scaffold22 TRF Tandem_Repeat 1490582 1490860 184 + . . scaffold22 TRF Tandem_Repeat 1490941 1491026 86 + . . scaffold22 TRF Tandem_Repeat 1494090 1494142 106 + . . scaffold22 GLEAN mRNA 1499029 1499223 0.970587 - . ID=CGI_10028919; scaffold22 GLEAN promoter 1499224 1500223 0.970587 - . ID=CGI_10028919; scaffold22 GLEAN mRNA 1499235 1505522 1 - . ID=CGI_10028920; scaffold22 GLEAN promoter 1505523 1506522 1 - . ID=CGI_10028920; scaffold22 TRF Tandem_Repeat 1507103 1507183 162 + . . scaffold22 TRF Tandem_Repeat 1507240 1507267 56 + . . scaffold22 TRF Tandem_Repeat 1510805 1510852 96 + . . scaffold22 TRF Tandem_Repeat 1513670 1513877 375 + . . scaffold22 TRF Tandem_Repeat 1514788 1514862 78 + . . scaffold22 TRF Tandem_Repeat 1514801 1514862 106 + . . scaffold22 TRF Tandem_Repeat 1518644 1520035 2033 + . . scaffold22 TRF Tandem_Repeat 1518660 1520035 1844 + . . scaffold22 TRF Tandem_Repeat 1527927 1527960 68 + . . scaffold22 GLEAN mRNA 1530092 1536360 0.999999 - . ID=CGI_10028921; scaffold22 GLEAN promoter 1536361 1537360 0.999999 - . ID=CGI_10028921; scaffold22 GLEAN promoter 1546390 1547389 0.999035 + . ID=CGI_10028922; scaffold22 GLEAN mRNA 1547390 1552288 0.999035 + . ID=CGI_10028922; scaffold22 WUBlastX LINE_L1 1561216 1561263 22 + . . scaffold22 WUBlastX LINE_L1 1561308 1562297 128 + . . scaffold22 WUBlastX LINE_L1 1561494 1562450 154 + . . scaffold22 WUBlastX LINE_L1-Tx1 1561494 1562306 449 + . . scaffold22 WUBlastX LINE_L1-Tx1 1562363 1563064 144 + . . scaffold22 WUBlastX LINE_L1 1562966 1563109 35 + . . scaffold22 WUBlastX LINE_L1 1563008 1563136 29 + . . scaffold22 WUBlastX LINE_L1 1563172 1563381 27 + . . scaffold22 WUBlastX LTR_Ngaro 1564935 1565429 29 - . . scaffold22 WUBlastX LTR_Ngaro 1564944 1565075 33 - . . scaffold22 WUBlastX LTR_Ngaro 1565420 1565542 29 - . . scaffold22 WUBlastX LTR_Ngaro 1565757 1566230 34 - . . scaffold22 WUBlastX LTR_Ngaro 1565817 1566188 55 - . . scaffold22 WUBlastX LINE_RTE-BovB 1569333 1569506 97 - . . scaffold22 WUBlastX LINE_RTE-BovB 1569377 1569667 39 - . . scaffold22 WUBlastX LINE_RTE-BovB 1569634 1569783 53 - . . scaffold22 WUBlastX LINE_RTE-BovB 1569670 1569807 40 - . . scaffold22 WUBlastX LINE_RTE-BovB 1569670 1569783 58 - . . scaffold22 TRF Tandem_Repeat 1593511 1593555 90 + . . scaffold22 TRF Tandem_Repeat 1593799 1593871 78 + . . scaffold22 TRF Tandem_Repeat 1593799 1593871 74 + . . scaffold22 TRF Tandem_Repeat 1593802 1593871 54 + . . scaffold22 TRF Tandem_Repeat 1594367 1594433 89 + . . scaffold22 GLEAN promoter 1601628 1602627 0.555898 + . ID=CGI_10028923; scaffold22 GLEAN mRNA 1602628 1603059 0.555898 + . ID=CGI_10028923; scaffold22 TRF Tandem_Repeat 1606768 1606829 63 + . . scaffold22 TRF Tandem_Repeat 1615919 1615958 55 + . . scaffold22 TRF Tandem_Repeat 1620527 1620579 70 + . . scaffold22 TRF Tandem_Repeat 1620536 1620579 61 + . . scaffold22 GLEAN promoter 1622701 1623700 0.998632 + . ID=CGI_10028924; scaffold22 GLEAN mRNA 1623701 1625155 0.998632 + . ID=CGI_10028924; scaffold22 TRF Tandem_Repeat 1637210 1637271 124 + . . scaffold22 GLEAN promoter 1638996 1639995 0.331553 + . ID=CGI_10028925; scaffold22 GLEAN mRNA 1639996 1653250 0.331553 + . ID=CGI_10028925; scaffold22 TRF Tandem_Repeat 1645408 1645456 98 + . . scaffold22 GLEAN mRNA 1653110 1666526 0.396422 - . ID=CGI_10028926; scaffold22 TRF Tandem_Repeat 1660322 1660407 95 + . . scaffold22 TRF Tandem_Repeat 1660324 1660397 105 + . . scaffold22 TRF Tandem_Repeat 1660909 1660958 100 + . . scaffold22 GLEAN promoter 1666527 1667526 0.396422 - . ID=CGI_10028926; scaffold22 GLEAN mRNA 1670156 1678053 1 - . ID=CGI_10028927; scaffold22 GLEAN promoter 1678054 1679053 1 - . ID=CGI_10028927; scaffold22 GLEAN promoter 1681597 1682596 0.999948 + . ID=CGI_10028928; scaffold22 GLEAN mRNA 1682597 1708267 0.999948 + . ID=CGI_10028928; scaffold22 TRF Tandem_Repeat 1685979 1686015 74 + . . scaffold22 TRF Tandem_Repeat 1686106 1686143 76 + . . scaffold22 TRF Tandem_Repeat 1689092 1689126 61 + . . scaffold22 TRF Tandem_Repeat 1700579 1700609 62 + . . scaffold22 TRF Tandem_Repeat 1700628 1700655 56 + . . scaffold22 GLEAN promoter 1709615 1710614 0.998897 + . ID=CGI_10028929; scaffold22 GLEAN mRNA 1710615 1726578 0.998897 + . ID=CGI_10028929; scaffold22 TRF Tandem_Repeat 1710916 1710942 54 + . . scaffold22 TRF Tandem_Repeat 1711887 1711941 103 + . . scaffold22 TRF Tandem_Repeat 1712600 1712649 57 + . . scaffold22 TRF Tandem_Repeat 1717831 1717883 106 + . . scaffold22 GLEAN mRNA 1728744 1730768 0.999999 - . ID=CGI_10028930; scaffold22 GLEAN promoter 1730769 1731768 0.999999 - . ID=CGI_10028930; scaffold22 TRF Tandem_Repeat 1739177 1739395 188 + . . scaffold22 TRF Tandem_Repeat 1739177 1739395 170 + . . scaffold22 TRF Tandem_Repeat 1739266 1739369 111 + . . scaffold22 GLEAN promoter 1739746 1740745 0.648316 + . ID=CGI_10028931; scaffold22 TRF Tandem_Repeat 1740068 1740168 121 + . . scaffold22 GLEAN mRNA 1740746 1762025 0.648316 + . ID=CGI_10028931; scaffold22 TRF Tandem_Repeat 1748210 1748264 110 + . . scaffold22 GLEAN mRNA 1748291 1749451 1 - . ID=CGI_10028932; scaffold22 GLEAN promoter 1749452 1750451 1 - . ID=CGI_10028932; scaffold22 GLEAN promoter 1762621 1763620 1 + . ID=CGI_10028933; scaffold22 GLEAN mRNA 1763621 1771882 1 + . ID=CGI_10028933; scaffold22 TRF Tandem_Repeat 1765849 1765901 90 + . . scaffold22 TRF Tandem_Repeat 1776275 1777019 1242 + . . scaffold22 GLEAN mRNA 1784983 1800181 0.865666 - . ID=CGI_10028934; scaffold22 TRF Tandem_Repeat 1796574 1796607 68 + . . scaffold22 GLEAN promoter 1800182 1801181 0.865666 - . ID=CGI_10028934; scaffold22 TRF Tandem_Repeat 1808001 1808114 210 + . . scaffold22 WUBlastX LTR_Ngaro 1812570 1812794 102 + . . scaffold22 WUBlastX LTR_Ngaro 1812570 1812758 123 + . . scaffold22 WUBlastX LTR_Ngaro 1812748 1813062 73 + . . scaffold22 WUBlastX LTR_Ngaro 1812748 1812912 77 + . . scaffold22 WUBlastX LTR_Ngaro 1812958 1813143 61 + . . scaffold22 TRF Tandem_Repeat 1815263 1815288 52 + . . scaffold22 TRF Tandem_Repeat 1816952 1817572 312 + . . scaffold22 GLEAN promoter 1818528 1819527 0.988961 + . ID=CGI_10028935; scaffold22 GLEAN mRNA 1819528 1821088 0.988961 + . ID=CGI_10028935; scaffold22 WUBlastX LTR_Gypsy 1819567 1819881 25 + . . scaffold22 TRF Tandem_Repeat 1821199 1821589 423 + . . scaffold22 WUBlastX RC_Helitron 1821592 1822299 368 + . . scaffold22 WUBlastX RC_Helitron 1822999 1825749 1796 + . . scaffold22 WUBlastX RC_Helitron 1825120 1826025 95 + . . scaffold22 WUBlastX RC_Helitron 1825950 1827719 748 + . . scaffold22 TRF Tandem_Repeat 1832820 1833580 1014 + . . scaffold22 WUBlastX LTR_Ngaro 1834876 1835118 106 - . . scaffold22 WUBlastX LTR_Ngaro 1834876 1835214 82 - . . scaffold22 WUBlastX LTR_Ngaro 1838227 1838646 127 - . . scaffold22 TRF Tandem_Repeat 1839208 1839579 311 + . . scaffold22 TRF Tandem_Repeat 1844214 1844238 50 + . . scaffold22 TRF Tandem_Repeat 1854006 1854045 53 + . . scaffold22 WUBlastX DNA_Crypton 1857197 1857511 28 + . . scaffold22 WUBlastX DNA_Crypton 1857656 1857823 22 + . . scaffold22 WUBlastX DNA_Crypton 1857895 1858287 71 + . . scaffold22 WUBlastX DNA_Crypton 1857997 1858287 110 + . . scaffold22 GLEAN promoter 1862347 1863346 0.647996 + . ID=CGI_10028937; scaffold22 GLEAN promoter 1862760 1863759 0.544455 + . ID=CGI_10028938; scaffold22 WUBlastX DNA_TcMar-Fot1 1863119 1863442 65 + . . scaffold22 GLEAN mRNA 1863347 1863687 0.647996 + . ID=CGI_10028937; scaffold22 WUBlastX DNA_TcMar-Fot1 1863538 1863921 48 + . . scaffold22 GLEAN mRNA 1863760 1864161 0.544455 + . ID=CGI_10028938; scaffold22 WUBlastX DNA_TcMar-Tc2 1863772 1863942 57 + . . scaffold22 TRF Tandem_Repeat 1865386 1865439 51 + . . scaffold22 TRF Tandem_Repeat 1867383 1867407 50 + . . scaffold22 GLEAN mRNA 1869336 1885890 0.999933 - . ID=CGI_10028939; scaffold22 TRF Tandem_Repeat 1873216 1873294 158 + . . scaffold22 TRF Tandem_Repeat 1879835 1879975 138 + . . scaffold22 TRF Tandem_Repeat 1880967 1881100 121 + . . scaffold22 GLEAN promoter 1885891 1886890 0.999933 - . ID=CGI_10028939; scaffold22 TRF Tandem_Repeat 1890186 1890272 83 + . . scaffold22 TRF Tandem_Repeat 1900509 1900726 393 + . . scaffold22 TRF Tandem_Repeat 1900532 1900742 169 + . . scaffold22 TRF Tandem_Repeat 1907082 1907138 96 + . . scaffold22 TRF Tandem_Repeat 1912457 1912501 54 + . . scaffold22 TRF Tandem_Repeat 1912461 1912505 72 + . . scaffold22 TRF Tandem_Repeat 1912499 1912529 53 + . . scaffold22 TRF Tandem_Repeat 1915342 1915387 92 + . . scaffold22 WUBlastX DNA_PiggyBac 1917008 1917250 84 + . . scaffold22 WUBlastX DNA_PiggyBac 1917201 1918496 1039 + . . scaffold22 TRF Tandem_Repeat 1929569 1929745 354 + . . scaffold22 TRF Tandem_Repeat 1943240 1943326 86 + . . scaffold22 TRF Tandem_Repeat 1943272 1943326 56 + . . scaffold22 TRF Tandem_Repeat 1944316 1944363 96 + . . scaffold22 TRF Tandem_Repeat 1945257 1945290 50 + . . scaffold22 TRF Tandem_Repeat 1949672 1949712 82 + . . scaffold220 WUBlastX LINE_L1-Tx1 13469 14749 423 + . . scaffold220 WUBlastX LINE_L1-Tx1 14904 16667 454 + . . scaffold220 TRF Tandem_Repeat 24238 24278 82 + . . scaffold220 GLEAN mRNA 29286 31166 0.999145 - . ID=CGI_10002489; scaffold220 GLEAN promoter 31167 32166 0.999145 - . ID=CGI_10002489; scaffold220 GLEAN mRNA 36654 38628 0.999144 - . ID=CGI_10002490; scaffold220 GLEAN promoter 38629 39628 0.999144 - . ID=CGI_10002490; scaffold220 TRF Tandem_Repeat 39679 40758 1038 + . . scaffold220 TRF Tandem_Repeat 43396 43429 68 + . . scaffold221 TRF Tandem_Repeat 2707 2828 153 + . . scaffold221 TRF Tandem_Repeat 2847 2959 120 + . . scaffold221 WUBlastX LTR_Pao 33534 34199 91 + . . scaffold221 WUBlastX LTR_Pao 33711 34226 96 + . . scaffold221 WUBlastX LTR_Pao 33879 34199 111 + . . scaffold221 TRF Tandem_Repeat 34686 35775 1567 + . . scaffold221 TRF Tandem_Repeat 35980 36017 58 + . . scaffold221 WUBlastX LTR_Pao 36053 36256 84 + . . scaffold221 WUBlastX LTR_Pao 36250 36432 119 + . . scaffold221 WUBlastX LTR_Pao 36250 36573 115 + . . scaffold221 TRF Tandem_Repeat 36985 37019 70 + . . scaffold221 TRF Tandem_Repeat 43614 44302 1227 + . . scaffold221 TRF Tandem_Repeat 44307 44361 83 + . . scaffold221 TRF Tandem_Repeat 44307 44348 66 + . . scaffold221 TRF Tandem_Repeat 44310 44361 77 + . . scaffold221 GLEAN promoter 45169 46168 0.43356 + . ID=CGI_10008342; scaffold221 GLEAN mRNA 46169 51008 0.43356 + . ID=CGI_10008342; scaffold221 WUBlastX LTR_Gypsy-Cigr 51807 52637 98 + . . scaffold221 WUBlastX LTR_Gypsy 51849 52457 118 + . . scaffold221 WUBlastX LTR_Gypsy 52503 52682 22 + . . scaffold221 WUBlastX LTR_Gypsy-Cigr 52727 53905 140 + . . scaffold221 WUBlastX LTR_Gypsy 52889 53872 176 + . . scaffold221 WUBlastX LTR_Gypsy 53645 53953 85 + . . scaffold221 WUBlastX LTR_Gypsy 53741 54010 24 + . . scaffold221 WUBlastX DNA_Kolobok-IS4 61398 61631 56 + . . scaffold221 TRF Tandem_Repeat 62912 62939 56 + . . scaffold221 WUBlastX DNA_IS4EU 65528 65704 36 - . . scaffold221 GLEAN promoter 65643 66642 0.999372 + . ID=CGI_10008343; scaffold221 WUBlastX DNA_IS4EU 65704 65877 67 - . . scaffold221 GLEAN mRNA 66643 66822 0.999372 + . ID=CGI_10008343; scaffold221 TRF Tandem_Repeat 68904 69857 1575 + . . scaffold221 TRF Tandem_Repeat 75660 76619 1421 + . . scaffold221 WUBlastX DNA_Harbinger 78728 79528 281 - . . scaffold221 GLEAN mRNA 79166 80425 0.999137 - . ID=CGI_10008344; scaffold221 WUBlastX DNA_Harbinger 80067 80156 26 - . . scaffold221 WUBlastX DNA_Harbinger 80246 80638 140 - . . scaffold221 GLEAN promoter 80426 81425 0.999137 - . ID=CGI_10008344; scaffold221 GLEAN promoter 81988 82987 0.999661 + . ID=CGI_10008345; scaffold221 WUBlastX LTR_Gypsy 82757 83215 66 + . . scaffold221 WUBlastX LTR_Gypsy 82832 83374 63 + . . scaffold221 WUBlastX LTR_Copia 82832 83680 39 + . . scaffold221 GLEAN mRNA 82988 83629 0.999661 + . ID=CGI_10008345; scaffold221 WUBlastX LTR_DIRS 86295 86603 91 - . . scaffold221 WUBlastX LTR_DIRS 86391 86600 95 - . . scaffold221 WUBlastX LTR_DIRS 86567 87100 83 - . . scaffold221 WUBlastX LTR_DIRS 86741 87268 53 - . . scaffold221 TRF Tandem_Repeat 95380 95416 56 + . . scaffold221 WUBlastX DNA_Kolobok 102718 103299 113 - . . scaffold221 GLEAN mRNA 103347 105191 1 - . ID=CGI_10008346; scaffold221 GLEAN promoter 105192 106191 1 - . ID=CGI_10008346; scaffold221 GLEAN mRNA 107640 109641 0.93698 - . ID=CGI_10008347; scaffold221 GLEAN promoter 109642 110641 0.93698 - . ID=CGI_10008347; scaffold221 WUBlastX LTR_DIRS 113685 114080 93 + . . scaffold221 WUBlastX LTR_Gypsy 114257 114436 20 + . . scaffold221 WUBlastX LTR_Gypsy 114293 114865 451 + . . scaffold221 WUBlastX LTR_Gypsy 114909 117332 2150 + . . scaffold221 WUBlastX LTR_Gypsy 117334 118191 526 + . . scaffold221 WUBlastX LTR_Copia 118464 118562 28 + . . scaffold221 WUBlastX LTR_DIRS 118564 118881 49 + . . scaffold221 WUBlastX LTR_DIRS 118621 118866 70 + . . scaffold221 WUBlastX LTR_DIRS 118824 119570 31 + . . scaffold221 WUBlastX LTR_DIRS 118848 119195 49 + . . scaffold221 WUBlastX LTR_DIRS 119397 119756 30 + . . scaffold221 TRF Tandem_Repeat 135594 135639 92 + . . scaffold221 TRF Tandem_Repeat 136791 136838 53 + . . scaffold221 WUBlastX DNA_TcMar-Tc1 137623 138222 298 - . . scaffold221 WUBlastX DNA_TcMar-Tc1 137623 138342 169 - . . scaffold221 WUBlastX DNA_TcMar-Tc1 138243 138404 33 - . . scaffold221 TRF Tandem_Repeat 143325 143388 60 + . . scaffold221 TRF Tandem_Repeat 170570 170649 151 + . . scaffold221 GLEAN mRNA 172242 177621 0.768664 - . ID=CGI_10008348; scaffold221 GLEAN promoter 177622 178621 0.768664 - . ID=CGI_10008348; scaffold221 TRF Tandem_Repeat 180289 181674 923 + . . scaffold221 GLEAN promoter 194787 195786 0.999855 + . ID=CGI_10008349; scaffold221 TRF Tandem_Repeat 195185 195288 59 + . . scaffold221 GLEAN mRNA 195787 196134 0.999855 + . ID=CGI_10008349; scaffold221 TRF Tandem_Repeat 196467 196686 336 + . . scaffold221 GLEAN mRNA 199323 199850 0.475244 - . ID=CGI_10008350; scaffold221 GLEAN promoter 199851 200850 0.475244 - . ID=CGI_10008350; scaffold221 TRF Tandem_Repeat 202201 202642 670 + . . scaffold221 TRF Tandem_Repeat 203470 203691 207 + . . scaffold222 GLEAN promoter 539 1538 1 + . ID=CGI_10007120; scaffold222 GLEAN mRNA 1539 2276 1 + . ID=CGI_10007120; scaffold222 WUBlastX DNA_TcMar-Tc1 21888 22289 67 + . . scaffold222 WUBlastX DNA_TcMar-Tc1 22062 22301 68 + . . scaffold222 TRF Tandem_Repeat 25112 25150 78 + . . scaffold222 GLEAN promoter 27929 28928 0.659955 + . ID=CGI_10007121; scaffold222 GLEAN mRNA 28929 43685 0.659955 + . ID=CGI_10007121; scaffold222 WUBlastX DNA_hAT 31801 32340 90 + . . scaffold222 WUBlastX LTR_Gypsy 45567 46730 381 + . . scaffold222 WUBlastX LTR_Gypsy 45744 47075 876 + . . scaffold222 TRF Tandem_Repeat 49018 49046 58 + . . scaffold222 TRF Tandem_Repeat 49746 50127 620 + . . scaffold222 TRF Tandem_Repeat 50215 50241 54 + . . scaffold222 WUBlastX DNA_En-Spm 52680 54923 1297 - . . scaffold222 WUBlastX DNA_En-Spm 53772 55208 81 - . . scaffold222 GLEAN promoter 57915 58914 0.850121 + . ID=CGI_10007122; scaffold222 GLEAN mRNA 58915 64230 0.850121 + . ID=CGI_10007122; scaffold222 TRF Tandem_Repeat 59214 59269 94 + . . scaffold222 TRF Tandem_Repeat 61601 61634 50 + . . scaffold222 WUBlastX LTR_Pao 86918 87001 23 + . . scaffold222 WUBlastX LTR_Pao 87170 88246 77 + . . scaffold222 WUBlastX LTR_Pao 87281 88114 119 + . . scaffold222 WUBlastX LTR_Pao 87665 88114 146 + . . scaffold222 WUBlastX LTR_Pao 87770 88114 305 + . . scaffold222 WUBlastX LTR_Pao 87770 88177 258 + . . scaffold222 WUBlastX LTR_Pao 88129 88320 22 + . . scaffold222 WUBlastX LTR_Pao 88150 88278 29 + . . scaffold222 WUBlastX LTR_Pao 88880 89806 908 + . . scaffold222 WUBlastX LINE_L2 91421 91987 27 + . . scaffold222 WUBlastX LINE_RTE-X 91529 91990 189 + . . scaffold222 WUBlastX LINE_RTE-X 91529 92386 143 + . . scaffold222 WUBlastX LINE_RTE-X 93158 93322 43 + . . scaffold222 GLEAN mRNA 95553 98577 0.644207 - . ID=CGI_10007123; scaffold222 GLEAN promoter 98578 99577 0.644207 - . ID=CGI_10007123; scaffold222 WUBlastX DNA_IS4EU 108090 108434 196 - . . scaffold222 WUBlastX DNA_Kolobok-IS4 108436 109125 266 - . . scaffold222 WUBlastX DNA_IS4EU 109652 109984 49 - . . scaffold222 TRF Tandem_Repeat 110726 110761 72 + . . scaffold222 TRF Tandem_Repeat 128282 129247 1072 + . . scaffold222 WUBlastX DNA_Harbinger 131179 131850 179 - . . scaffold222 WUBlastX DNA_Harbinger 131659 132111 89 - . . scaffold222 GLEAN mRNA 134195 141016 0.626444 - . ID=CGI_10007124; scaffold222 WUBlastX LINE_L2 137512 137652 26 - . . scaffold222 WUBlastX LINE_L2 137985 139706 1199 - . . scaffold222 WUBlastX LINE_RTE-BovB 139578 139772 25 - . . scaffold222 TRF Tandem_Repeat 140062 140090 58 + . . scaffold222 WUBlastX DNA_Crypton 140198 140767 75 - . . scaffold222 GLEAN promoter 141017 142016 0.626444 - . ID=CGI_10007124; scaffold222 WUBlastX LTR_DIRS 143290 143934 212 + . . scaffold222 WUBlastX LTR_DIRS 143461 144033 256 + . . scaffold222 WUBlastX LTR_DIRS 144093 146918 1650 + . . scaffold222 WUBlastX DNA_Kolobok 152803 152958 29 + . . scaffold222 WUBlastX DNA_P 153382 153612 81 - . . scaffold222 WUBlastX DNA_Harbinger 154487 154606 30 - . . scaffold222 WUBlastX DNA_Harbinger 154505 154600 32 - . . scaffold222 WUBlastX DNA_Harbinger 154638 155036 181 - . . scaffold222 WUBlastX DNA_Harbinger 154638 155117 76 - . . scaffold222 WUBlastX Unknown 155120 155215 24 - . . scaffold222 WUBlastX LINE_L1-Tx1 158549 158884 101 - . . scaffold222 WUBlastX LTR_Gypsy-Cigr 161921 165601 1622 - . . scaffold222 WUBlastX LTR_Gypsy 165236 165745 54 - . . scaffold222 WUBlastX LTR_Gypsy-Cigr 166097 166501 82 - . . scaffold222 TRF Tandem_Repeat 168220 168274 65 + . . scaffold222 TRF Tandem_Repeat 168223 168278 71 + . . scaffold223 TRF Tandem_Repeat 82 132 84 + . . scaffold223 GLEAN mRNA 942 7795 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX DNA_Kolobok-Hyd 2385 2657 21 - . . scaffold223 TRF Tandem_Repeat 3144 3191 96 + . . scaffold223 WUBlastX LTR_Gypsy 5041 5700 226 - . . scaffold223 WUBlastX LTR_Gypsy 5146 5745 540 - . . scaffold223 WUBlastX LTR_Gypsy 5149 5856 458 - . . scaffold223 WUBlastX LTR_Gypsy 5756 6631 169 - . . scaffold223 WUBlastX LTR_Gypsy 6260 6703 96 - . . scaffold223 WUBlastX LTR_Gypsy 6667 7182 33 - . . scaffold223 WUBlastX LTR_Gypsy 7286 7570 123 - . . scaffold223 WUBlastX LTR_Gypsy 7292 7651 115 - . . scaffold223 GLEAN promoter 7796 8795 0.487602 - . ID=CGI_10012904; scaffold223 WUBlastX LTR_DIRS 20661 20819 46 + . . scaffold223 WUBlastX LTR_DIRS 20661 21020 22 + . . scaffold223 GLEAN mRNA 27113 29734 0.441778 - . ID=CGI_10012905; scaffold223 GLEAN promoter 29735 30734 0.441778 - . ID=CGI_10012905; scaffold223 GLEAN promoter 56223 57222 0.628672 + . ID=CGI_10012906; scaffold223 GLEAN mRNA 57223 59112 0.628672 + . ID=CGI_10012906; scaffold223 TRF Tandem_Repeat 60796 60973 241 + . . scaffold223 TRF Tandem_Repeat 61032 61073 84 + . . scaffold223 GLEAN promoter 61996 62995 0.987819 + . ID=CGI_10012907; scaffold223 GLEAN mRNA 62996 63943 0.987819 + . ID=CGI_10012907; scaffold223 GLEAN mRNA 65949 67807 0.99997 - . ID=CGI_10012908; scaffold223 GLEAN promoter 67808 68807 0.99997 - . ID=CGI_10012908; scaffold223 GLEAN mRNA 70317 87252 0.45011 - . ID=CGI_10012909; scaffold223 TRF Tandem_Repeat 71660 72570 1547 + . . scaffold223 TRF Tandem_Repeat 71660 72570 1527 + . . scaffold223 TRF Tandem_Repeat 71660 72570 1518 + . . scaffold223 TRF Tandem_Repeat 77746 78344 1171 + . . scaffold223 TRF Tandem_Repeat 77746 79290 2718 + . . scaffold223 TRF Tandem_Repeat 78298 79136 1651 + . . scaffold223 TRF Tandem_Repeat 78334 79278 1266 + . . scaffold223 TRF Tandem_Repeat 78970 79157 189 + . . scaffold223 GLEAN promoter 87253 88252 0.45011 - . ID=CGI_10012909; scaffold223 GLEAN promoter 88903 89902 0.899585 + . ID=CGI_10012910; scaffold223 GLEAN mRNA 89903 112437 0.899585 + . ID=CGI_10012910; scaffold223 TRF Tandem_Repeat 94518 95276 420 + . . scaffold223 TRF Tandem_Repeat 94799 95152 561 + . . scaffold223 TRF Tandem_Repeat 97538 98280 913 + . . scaffold223 TRF Tandem_Repeat 99613 99650 76 + . . scaffold223 TRF Tandem_Repeat 100843 100889 94 + . . scaffold223 TRF Tandem_Repeat 107907 108093 96 + . . scaffold223 TRF Tandem_Repeat 109373 109559 96 + . . scaffold223 TRF Tandem_Repeat 109755 110061 479 + . . scaffold223 TRF Tandem_Repeat 111043 111091 98 + . . scaffold223 TRF Tandem_Repeat 114988 115025 76 + . . scaffold223 GLEAN promoter 116649 117648 0.621827 + . ID=CGI_10012911; scaffold223 GLEAN mRNA 117649 118362 0.621827 + . ID=CGI_10012911; scaffold223 WUBlastX LTR_Pao 123000 123638 25 + . . scaffold223 WUBlastX LTR_Pao 123366 128960 3659 + . . scaffold223 TRF Tandem_Repeat 130684 131243 557 + . . scaffold223 TRF Tandem_Repeat 130684 131255 560 + . . scaffold223 TRF Tandem_Repeat 130684 131215 811 + . . scaffold223 TRF Tandem_Repeat 130684 131255 743 + . . scaffold223 GLEAN mRNA 135185 136264 0.776658 - . ID=CGI_10012913; scaffold223 GLEAN promoter 136265 137264 0.776658 - . ID=CGI_10012913; scaffold223 TRF Tandem_Repeat 138339 138446 195 + . . scaffold223 TRF Tandem_Repeat 139371 139576 160 + . . scaffold223 TRF Tandem_Repeat 140802 140880 54 + . . scaffold223 TRF Tandem_Repeat 140838 140896 61 + . . scaffold223 WUBlastX LINE_CR1 146346 146507 39 - . . scaffold223 WUBlastX LINE_CR1-L2 146429 146662 73 - . . scaffold223 WUBlastX LINE_CR1-L2 146489 146662 86 - . . scaffold223 WUBlastX LINE_L2 146489 146698 36 - . . scaffold223 WUBlastX DNA_TcMar-Fot1 152342 154123 692 + . . scaffold223 WUBlastX DNA_TcMar-Fot1 152405 153667 708 + . . scaffold223 TRF Tandem_Repeat 159754 159802 91 + . . scaffold223 WUBlastX LTR_Gypsy 167646 168638 797 + . . scaffold223 WUBlastX LINE_CR1 172777 172929 33 - . . scaffold223 WUBlastX LINE_CR1-L2 173894 174190 70 - . . scaffold223 WUBlastX LINE_CR1-L2 173894 174085 82 - . . scaffold223 TRF Tandem_Repeat 189541 189572 64 + . . scaffold223 TRF Tandem_Repeat 190070 191563 2179 + . . scaffold223 TRF Tandem_Repeat 190534 190623 59 + . . scaffold223 TRF Tandem_Repeat 190901 190983 61 + . . scaffold223 GLEAN promoter 192426 193425 0.478695 + . ID=CGI_10012914; scaffold223 GLEAN mRNA 193426 207514 0.478695 + . ID=CGI_10012914; scaffold223 TRF Tandem_Repeat 200097 200137 82 + . . scaffold223 TRF Tandem_Repeat 200741 200774 68 + . . scaffold223 TRF Tandem_Repeat 200817 200894 72 + . . scaffold223 TRF Tandem_Repeat 203672 204421 939 + . . scaffold223 GLEAN mRNA 209235 213656 0.734554 - . ID=CGI_10012915; scaffold223 TRF Tandem_Repeat 210949 211028 101 + . . scaffold223 TRF Tandem_Repeat 210955 212071 1176 + . . scaffold223 TRF Tandem_Repeat 211606 211684 50 + . . scaffold223 TRF Tandem_Repeat 211750 212081 70 + . . scaffold223 TRF Tandem_Repeat 213101 213299 130 + . . scaffold223 GLEAN promoter 213657 214656 0.734554 - . ID=CGI_10012915; scaffold223 GLEAN mRNA 214602 216487 1 - . ID=CGI_10012916; scaffold223 GLEAN promoter 216106 217105 0.836293 + . ID=CGI_10012917; scaffold223 GLEAN promoter 216488 217487 1 - . ID=CGI_10012916; scaffold223 GLEAN mRNA 217106 220908 0.836293 + . ID=CGI_10012917; scaffold223 GLEAN promoter 220696 221695 0.850648 + . ID=CGI_10012918; scaffold223 GLEAN mRNA 221696 232581 0.850648 + . ID=CGI_10012918; scaffold223 TRF Tandem_Repeat 222961 223115 177 + . . scaffold223 TRF Tandem_Repeat 226499 227174 976 + . . scaffold223 TRF Tandem_Repeat 226500 227174 1063 + . . scaffold223 TRF Tandem_Repeat 226912 227048 80 + . . scaffold223 WUBlastX LINE_RTE-BovB 232262 232567 59 + . . scaffold223 GLEAN mRNA 232845 236608 1 - . ID=CGI_10012919; scaffold223 GLEAN promoter 236609 237608 1 - . ID=CGI_10012919; scaffold223 TRF Tandem_Repeat 237159 237193 70 + . . scaffold223 WUBlastX LINE_RTE-BovB 237209 237445 90 + . . scaffold223 GLEAN promoter 242258 243257 1 + . ID=CGI_10012920; scaffold223 GLEAN mRNA 243258 246177 1 + . ID=CGI_10012920; scaffold223 GLEAN mRNA 247598 249074 1 - . ID=CGI_10012921; scaffold223 GLEAN promoter 249075 250074 1 - . ID=CGI_10012921; scaffold223 GLEAN mRNA 251587 252269 0.908955 - . ID=CGI_10012922; scaffold223 GLEAN promoter 252270 253269 0.908955 - . ID=CGI_10012922; scaffold223 GLEAN mRNA 275585 285591 0.814847 - . ID=CGI_10012923; scaffold223 TRF Tandem_Repeat 279060 280706 2119 + . . scaffold223 TRF Tandem_Repeat 279060 280706 2087 + . . scaffold223 WUBlastX Unknown 283323 283451 25 + . . scaffold223 WUBlastX DNA_Harbinger 283616 284278 260 + . . scaffold223 WUBlastX DNA_Harbinger 283616 284398 226 + . . scaffold223 GLEAN promoter 285592 286591 0.814847 - . ID=CGI_10012923; scaffold223 TRF Tandem_Repeat 295214 295269 103 + . . scaffold223 TRF Tandem_Repeat 334975 335003 58 + . . scaffold224 TRF Tandem_Repeat 7824 7872 98 + . . scaffold224 GLEAN mRNA 11590 21704 0.726091 - . ID=CGI_10003614; scaffold224 TRF Tandem_Repeat 15080 15126 94 + . . scaffold224 GLEAN promoter 20517 21516 0.593714 + . ID=CGI_10003615; scaffold224 GLEAN mRNA 21517 40131 0.593714 + . ID=CGI_10003615; scaffold224 GLEAN promoter 21705 22704 0.726091 - . ID=CGI_10003614; scaffold224 TRF Tandem_Repeat 40589 40616 56 + . . scaffold224 GLEAN mRNA 41298 72438 0.99912 - . ID=CGI_10003616; scaffold224 TRF Tandem_Repeat 49059 49298 183 + . . scaffold224 TRF Tandem_Repeat 49099 49310 170 + . . scaffold224 WUBlastX DNA_TcMar-Tc1 53068 53259 124 - . . scaffold224 WUBlastX DNA_TcMar-Tc1 53274 53648 211 - . . scaffold224 WUBlastX DNA_TcMar-Tc1 53274 53753 119 - . . scaffold224 WUBlastX DNA_TcMar-Tc1 53642 54097 91 - . . scaffold224 GLEAN promoter 72056 73055 1 + . ID=CGI_10003617; scaffold224 GLEAN promoter 72439 73438 0.99912 - . ID=CGI_10003616; scaffold224 GLEAN mRNA 73056 76877 1 + . ID=CGI_10003617; scaffold224 TRF Tandem_Repeat 77540 77610 106 + . . scaffold226 TRF Tandem_Repeat 5793 5854 72 + . . scaffold226 WUBlastX LINE_L1-Tx1 10294 10956 176 + . . scaffold226 TRF Tandem_Repeat 10976 11042 89 + . . scaffold226 WUBlastX LINE_L1-Tx1 13837 14883 68 + . . scaffold226 WUBlastX LINE_L1 13843 14166 125 + . . scaffold226 GLEAN mRNA 15127 17122 0.681612 - . ID=CGI_10025340; scaffold226 GLEAN promoter 17123 18122 0.681612 - . ID=CGI_10025340; scaffold226 WUBlastX DNA_TcMar-Tc1 23620 23757 21 + . . scaffold226 WUBlastX DNA_TcMar-Tc1 23650 23757 26 + . . scaffold226 WUBlastX DNA_TcMar-Tc1 23756 24613 402 + . . scaffold226 TRF Tandem_Repeat 44448 44559 66 + . . scaffold226 TRF Tandem_Repeat 44448 44559 100 + . . scaffold226 TRF Tandem_Repeat 82161 82214 99 + . . scaffold226 WUBlastX DNA_TcMar-Tc2 87020 87418 52 + . . scaffold226 WUBlastX DNA_TcMar-Tc2 87418 87510 48 + . . scaffold226 GLEAN mRNA 87624 96638 0.544849 - . ID=CGI_10025341; scaffold226 GLEAN promoter 96639 97638 0.544849 - . ID=CGI_10025341; scaffold226 TRF Tandem_Repeat 97401 97438 76 + . . scaffold226 TRF Tandem_Repeat 102384 102426 77 + . . scaffold226 TRF Tandem_Repeat 103043 103096 99 + . . scaffold226 TRF Tandem_Repeat 104436 104483 96 + . . scaffold226 TRF Tandem_Repeat 104869 104918 75 + . . scaffold226 GLEAN mRNA 113416 121209 0.999221 - . ID=CGI_10025342; scaffold226 TRF Tandem_Repeat 114698 114747 100 + . . scaffold226 GLEAN promoter 121210 122209 0.999221 - . ID=CGI_10025342; scaffold226 TRF Tandem_Repeat 121983 122009 54 + . . scaffold226 WUBlastX LTR_Pao 131372 131638 89 - . . scaffold226 WUBlastX LTR_Pao 131417 131872 30 - . . scaffold226 WUBlastX LTR_Pao 131426 131731 55 - . . scaffold226 WUBlastX LTR_Pao 131429 131680 58 - . . scaffold226 WUBlastX LTR_Pao 132211 132654 113 - . . scaffold226 WUBlastX LTR_Pao 132247 132609 133 - . . scaffold226 WUBlastX LTR_Pao 132648 133190 292 - . . scaffold226 WUBlastX LTR_Pao 133087 133242 53 - . . scaffold226 WUBlastX LTR_Pao 133612 134076 60 - . . scaffold226 WUBlastX LTR_Pao 133696 134790 325 - . . scaffold226 WUBlastX LTR_Pao 134784 135920 456 - . . scaffold226 WUBlastX LTR_Pao 135897 136721 71 - . . scaffold226 WUBlastX LTR_Pao 136305 136907 112 - . . scaffold226 WUBlastX LTR_Pao 136943 137545 111 - . . scaffold226 WUBlastX LTR_Pao 137087 137812 73 - . . scaffold226 WUBlastX LTR_Pao 137099 137698 180 - . . scaffold226 WUBlastX LINE_RTE-X 146018 146506 93 + . . scaffold226 WUBlastX LINE_RTE-X 146069 146392 122 + . . scaffold226 TRF Tandem_Repeat 146712 146736 50 + . . scaffold226 GLEAN promoter 149258 150257 1 + . ID=CGI_10025343; scaffold226 GLEAN mRNA 150258 170090 1 + . ID=CGI_10025343; scaffold226 GLEAN promoter 192639 193638 0.990878 + . ID=CGI_10025344; scaffold226 GLEAN mRNA 193639 195951 0.990878 + . ID=CGI_10025344; scaffold226 TRF Tandem_Repeat 197155 197359 178 + . . scaffold226 TRF Tandem_Repeat 197246 197354 123 + . . scaffold226 GLEAN promoter 199212 200211 0.999949 + . ID=CGI_10025345; scaffold226 GLEAN mRNA 200212 215413 0.999949 + . ID=CGI_10025345; scaffold226 TRF Tandem_Repeat 207029 208203 1538 + . . scaffold226 TRF Tandem_Repeat 211279 211726 680 + . . scaffold226 GLEAN mRNA 218597 228179 1 - . ID=CGI_10025346; scaffold226 GLEAN promoter 228180 229179 1 - . ID=CGI_10025346; scaffold226 TRF Tandem_Repeat 233799 233833 61 + . . scaffold226 WUBlastX LINE_CR1-L2 242196 242681 65 + . . scaffold226 WUBlastX LINE_L2 242280 242792 150 + . . scaffold226 WUBlastX LINE_L2 242310 242924 54 + . . scaffold226 GLEAN mRNA 251607 251816 0.999843 - . ID=CGI_10025347; scaffold226 WUBlastX LINE_RTE-X 251619 251996 43 - . . scaffold226 GLEAN promoter 251817 252816 0.999843 - . ID=CGI_10025347; scaffold226 WUBlastX LTR_Gypsy 252331 252423 22 - . . scaffold226 WUBlastX LTR_Ngaro 252353 253234 388 - . . scaffold226 WUBlastX LTR_Ngaro 253255 254871 1026 - . . scaffold226 WUBlastX LTR_Ngaro 254915 255649 114 - . . scaffold226 WUBlastX LTR_Ngaro 255113 255823 174 - . . scaffold226 GLEAN promoter 262267 263266 0.893615 + . ID=CGI_10025348; scaffold226 GLEAN mRNA 263267 278066 0.893615 + . ID=CGI_10025348; scaffold226 WUBlastX LINE_RTE-X 264339 264581 40 + . . scaffold226 TRF Tandem_Repeat 272352 272473 172 + . . scaffold226 TRF Tandem_Repeat 275550 275607 116 + . . scaffold226 GLEAN mRNA 279695 291442 0.542347 - . ID=CGI_10025349; scaffold226 GLEAN promoter 291443 292442 0.542347 - . ID=CGI_10025349; scaffold226 TRF Tandem_Repeat 297882 297917 72 + . . scaffold226 GLEAN mRNA 302857 308287 0.835954 - . ID=CGI_10025350; scaffold226 GLEAN promoter 308288 309287 0.835954 - . ID=CGI_10025350; scaffold226 TRF Tandem_Repeat 315886 315923 67 + . . scaffold226 GLEAN mRNA 318870 323883 1 - . ID=CGI_10025351; scaffold226 GLEAN promoter 323884 324883 1 - . ID=CGI_10025351; scaffold226 TRF Tandem_Repeat 327385 327830 460 + . . scaffold226 TRF Tandem_Repeat 327396 327829 544 + . . scaffold226 TRF Tandem_Repeat 327396 327830 552 + . . scaffold226 WUBlastX LTR_Gypsy 334526 334852 114 + . . scaffold226 WUBlastX DNA_TcMar-Tc2 337521 337751 66 + . . scaffold226 WUBlastX DNA_TcMar-Fot1 337739 338056 71 + . . scaffold226 WUBlastX DNA_TcMar-Tc2 337817 338119 113 + . . scaffold226 WUBlastX DNA_TcMar-Tc2 337880 338296 105 + . . scaffold226 TRF Tandem_Repeat 340485 340528 88 + . . scaffold226 TRF Tandem_Repeat 341823 341869 58 + . . scaffold226 TRF Tandem_Repeat 343797 343853 53 + . . scaffold226 TRF Tandem_Repeat 343797 343852 60 + . . scaffold226 TRF Tandem_Repeat 344116 344658 753 + . . scaffold226 TRF Tandem_Repeat 344116 344658 774 + . . scaffold226 TRF Tandem_Repeat 344122 344658 839 + . . scaffold226 WUBlastX DNA_Maverick 349674 350402 213 - . . scaffold226 WUBlastX DNA_Maverick 350381 350761 253 - . . scaffold226 TRF Tandem_Repeat 361191 361241 77 + . . scaffold226 TRF Tandem_Repeat 361312 361361 64 + . . scaffold226 GLEAN promoter 361459 362458 1 + . ID=CGI_10025352; scaffold226 TRF Tandem_Repeat 361745 361810 114 + . . scaffold226 GLEAN mRNA 362459 364181 1 + . ID=CGI_10025352; scaffold226 TRF Tandem_Repeat 367189 368206 1734 + . . scaffold226 TRF Tandem_Repeat 368376 368429 58 + . . scaffold226 TRF Tandem_Repeat 368379 368424 58 + . . scaffold226 GLEAN mRNA 370022 376912 0.999676 - . ID=CGI_10025353; scaffold226 GLEAN promoter 376913 377912 0.999676 - . ID=CGI_10025353; scaffold226 TRF Tandem_Repeat 381870 381919 72 + . . scaffold226 TRF Tandem_Repeat 394112 394163 95 + . . scaffold226 TRF Tandem_Repeat 397038 397069 55 + . . scaffold226 TRF Tandem_Repeat 403157 403210 99 + . . scaffold226 WUBlastX LINE_L2-Hydra 403379 403420 21 + . . scaffold226 WUBlastX LINE_RTE-X 403946 404611 299 + . . scaffold226 WUBlastX LINE_L1 404150 404827 83 + . . scaffold226 WUBlastX LINE_RTE-X 404150 404701 121 + . . scaffold226 WUBlastX LINE_RTE-X 404153 404611 323 + . . scaffold226 WUBlastX LINE_RTE-X 404876 405307 101 + . . scaffold226 WUBlastX LINE_RTE-X 404888 405640 63 + . . scaffold226 WUBlastX LINE_RTE-X 404975 405370 114 + . . scaffold226 WUBlastX LINE_RTE-X 404975 405304 139 + . . scaffold226 WUBlastX LINE_RTE-X 405885 406271 27 + . . scaffold226 WUBlastX LINE_RTE-X 405945 406235 105 + . . scaffold226 WUBlastX LINE_RTE-X 405963 406394 89 + . . scaffold226 TRF Tandem_Repeat 406559 406583 50 + . . scaffold226 GLEAN promoter 406904 407903 0.999674 + . ID=CGI_10025355; scaffold226 GLEAN mRNA 407904 415956 0.999674 + . ID=CGI_10025355; scaffold226 GLEAN promoter 422246 423245 0.999676 + . ID=CGI_10025356; scaffold226 GLEAN mRNA 423246 429421 0.999676 + . ID=CGI_10025356; scaffold226 TRF Tandem_Repeat 425575 425625 61 + . . scaffold226 TRF Tandem_Repeat 425797 426474 957 + . . scaffold226 GLEAN mRNA 435489 443005 0.671753 - . ID=CGI_10025357; scaffold226 TRF Tandem_Repeat 437748 438666 1277 + . . scaffold226 GLEAN promoter 443006 444005 0.671753 - . ID=CGI_10025357; scaffold226 GLEAN mRNA 443419 444189 0.577267 - . ID=CGI_10025358; scaffold226 GLEAN promoter 444190 445189 0.577267 - . ID=CGI_10025358; scaffold226 GLEAN mRNA 445133 447703 0.999995 - . ID=CGI_10025359; scaffold226 GLEAN promoter 447704 448703 0.999995 - . ID=CGI_10025359; scaffold226 GLEAN promoter 450181 451180 0.999539 + . ID=CGI_10025360; scaffold226 GLEAN mRNA 451181 453924 0.999539 + . ID=CGI_10025360; scaffold226 TRF Tandem_Repeat 451354 451412 118 + . . scaffold226 GLEAN mRNA 458262 494436 0.999286 - . ID=CGI_10025361; scaffold226 TRF Tandem_Repeat 462263 462325 126 + . . scaffold226 WUBlastX LTR_DIRS 462406 462945 83 + . . scaffold226 WUBlastX LTR_DIRS 462526 462972 120 + . . scaffold226 WUBlastX LTR_DIRS 463022 464128 58 + . . scaffold226 WUBlastX LTR_DIRS 463070 463951 116 + . . scaffold226 WUBlastX LTR_DIRS 463178 463921 118 + . . scaffold226 WUBlastX LTR_DIRS 464105 464329 34 + . . scaffold226 WUBlastX LTR_DIRS 464352 464684 30 + . . scaffold226 WUBlastX LTR_Ngaro 467309 467410 39 + . . scaffold226 WUBlastX LTR_Ngaro 467463 467582 41 + . . scaffold226 WUBlastX LTR_Ngaro 467584 467763 67 + . . scaffold226 WUBlastX LTR_Ngaro 468026 468316 145 + . . scaffold226 WUBlastX LTR_Gypsy 468313 468357 25 + . . scaffold226 WUBlastX LTR_Ngaro 468325 468417 43 + . . scaffold226 WUBlastX LTR_Ngaro 468390 469151 384 + . . scaffold226 WUBlastX LTR_Ngaro 469058 469213 92 + . . scaffold226 WUBlastX LTR_Ngaro 469207 469614 169 + . . scaffold226 WUBlastX LTR_Ngaro 469530 470489 214 + . . scaffold226 TRF Tandem_Repeat 474033 474070 67 + . . scaffold226 TRF Tandem_Repeat 490854 490891 53 + . . scaffold226 TRF Tandem_Repeat 491332 491357 52 + . . scaffold226 TRF Tandem_Repeat 492797 492847 102 + . . scaffold226 GLEAN promoter 494437 495436 0.999286 - . ID=CGI_10025361; scaffold226 GLEAN mRNA 496877 501499 0.995797 - . ID=CGI_10025362; scaffold226 TRF Tandem_Repeat 497582 497633 86 + . . scaffold226 GLEAN promoter 501500 502499 0.995797 - . ID=CGI_10025362; scaffold226 GLEAN promoter 503179 504178 0.998274 + . ID=CGI_10025363; scaffold226 GLEAN mRNA 504179 505844 0.998274 + . ID=CGI_10025363; scaffold226 GLEAN promoter 505922 506921 0.999999 + . ID=CGI_10025364; scaffold226 GLEAN mRNA 506922 517527 0.999999 + . ID=CGI_10025364; scaffold226 TRF Tandem_Repeat 519244 519291 96 + . . scaffold226 TRF Tandem_Repeat 520354 520396 86 + . . scaffold226 TRF Tandem_Repeat 535905 535932 56 + . . scaffold226 GLEAN mRNA 537400 548404 0.999948 - . ID=CGI_10025365; scaffold226 GLEAN promoter 548405 549404 0.999948 - . ID=CGI_10025365; scaffold226 GLEAN mRNA 561044 562048 0.999661 - . ID=CGI_10025366; scaffold226 GLEAN promoter 561338 562337 1 + . ID=CGI_10025367; scaffold226 GLEAN promoter 562049 563048 0.999661 - . ID=CGI_10025366; scaffold226 GLEAN mRNA 562338 563801 1 + . ID=CGI_10025367; scaffold226 WUBlastX LTR_Gypsy 585775 586464 82 - . . scaffold226 GLEAN mRNA 600712 611717 0.69992 - . ID=CGI_10025368; scaffold226 TRF Tandem_Repeat 602045 602757 1250 + . . scaffold226 GLEAN promoter 606811 607810 0.999675 + . ID=CGI_10025369; scaffold226 GLEAN mRNA 607811 622261 0.999675 + . ID=CGI_10025369; scaffold226 GLEAN promoter 611718 612717 0.69992 - . ID=CGI_10025368; scaffold226 TRF Tandem_Repeat 631574 631618 90 + . . scaffold226 GLEAN promoter 637426 638425 0.559216 + . ID=CGI_10025370; scaffold226 GLEAN mRNA 638426 687523 0.559216 + . ID=CGI_10025370; scaffold226 TRF Tandem_Repeat 654007 654316 521 + . . scaffold226 TRF Tandem_Repeat 656026 656081 67 + . . scaffold226 WUBlastX LTR_Gypsy 659796 659972 42 - . . scaffold226 WUBlastX LTR_Gypsy-Cigr 660550 660948 62 - . . scaffold226 WUBlastX LTR_Gypsy-Cigr 660663 661022 49 - . . scaffold226 TRF Tandem_Repeat 676002 676062 68 + . . scaffold226 TRF Tandem_Repeat 677040 677089 75 + . . scaffold226 TRF Tandem_Repeat 700589 700635 51 + . . scaffold226 TRF Tandem_Repeat 703526 703663 118 + . . scaffold226 TRF Tandem_Repeat 704975 705496 371 + . . scaffold226 TRF Tandem_Repeat 709196 709253 116 + . . scaffold226 GLEAN mRNA 713881 714303 1 - . ID=CGI_10025371; scaffold226 GLEAN promoter 714304 715303 1 - . ID=CGI_10025371; scaffold226 TRF Tandem_Repeat 729304 729346 86 + . . scaffold226 GLEAN promoter 740764 741763 0.999949 + . ID=CGI_10025372; scaffold226 WUBlastX LINE_RTE-X 740975 741271 105 + . . scaffold226 GLEAN mRNA 741764 749247 0.999949 + . ID=CGI_10025372; scaffold226 WUBlastX LINE_RTE-X 761580 761747 28 + . . scaffold226 WUBlastX LINE_RTE-X 761646 761729 42 + . . scaffold226 WUBlastX LINE_RTE-X 761658 761753 37 + . . scaffold226 WUBlastX LINE_RTE-X 761968 762546 149 + . . scaffold226 GLEAN mRNA 767312 767539 0.776791 - . ID=CGI_10025373; scaffold226 GLEAN promoter 767540 768539 0.776791 - . ID=CGI_10025373; scaffold226 GLEAN mRNA 768766 777100 0.446111 - . ID=CGI_10025374; scaffold226 GLEAN promoter 777101 778100 0.446111 - . ID=CGI_10025374; scaffold226 TRF Tandem_Repeat 778495 778559 96 + . . scaffold226 GLEAN promoter 779022 780021 0.995567 + . ID=CGI_10025375; scaffold226 GLEAN mRNA 780022 794397 0.995567 + . ID=CGI_10025375; scaffold226 WUBlastX DNA_hAT 780073 780750 134 + . . scaffold226 WUBlastX DNA_hAT 781498 781671 49 + . . scaffold226 WUBlastX DNA_hAT 781564 781680 52 + . . scaffold226 WUBlastX DNA_hAT 781794 782045 91 + . . scaffold226 TRF Tandem_Repeat 787377 787403 54 + . . scaffold226 GLEAN mRNA 796912 797895 1 - . ID=CGI_10025376; scaffold226 GLEAN promoter 797089 798088 0.478036 + . ID=CGI_10025377; scaffold226 GLEAN promoter 797896 798895 1 - . ID=CGI_10025376; scaffold226 GLEAN mRNA 798089 801326 0.478036 + . ID=CGI_10025377; scaffold226 GLEAN promoter 811077 812076 1 + . ID=CGI_10025378; scaffold226 GLEAN mRNA 812077 819582 1 + . ID=CGI_10025378; scaffold226 GLEAN promoter 819317 820316 0.999382 + . ID=CGI_10025379; scaffold226 GLEAN mRNA 820317 823026 0.999382 + . ID=CGI_10025379; scaffold226 TRF Tandem_Repeat 824866 824965 73 + . . scaffold226 TRF Tandem_Repeat 824866 824966 62 + . . scaffold226 TRF Tandem_Repeat 824873 824964 123 + . . scaffold226 TRF Tandem_Repeat 825779 825881 52 + . . scaffold226 GLEAN promoter 826056 827055 0.702157 + . ID=CGI_10025380; scaffold226 TRF Tandem_Repeat 826923 826965 77 + . . scaffold226 GLEAN mRNA 827056 833252 0.702157 + . ID=CGI_10025380; scaffold226 GLEAN promoter 834553 835552 0.987005 + . ID=CGI_10025381; scaffold226 GLEAN mRNA 835553 841159 0.987005 + . ID=CGI_10025381; scaffold226 TRF Tandem_Repeat 839563 839785 401 + . . scaffold226 TRF Tandem_Repeat 842725 842770 92 + . . scaffold226 GLEAN mRNA 843582 844552 1 - . ID=CGI_10025382; scaffold226 TRF Tandem_Repeat 843904 843930 54 + . . scaffold226 GLEAN promoter 844553 845552 1 - . ID=CGI_10025382; scaffold226 GLEAN mRNA 845581 861191 0.530305 - . ID=CGI_10025383; scaffold226 TRF Tandem_Repeat 859814 859859 92 + . . scaffold226 GLEAN promoter 861192 862191 0.530305 - . ID=CGI_10025383; scaffold226 GLEAN mRNA 865301 872207 0.999676 - . ID=CGI_10025384; scaffold226 TRF Tandem_Repeat 868906 869046 120 + . . scaffold226 GLEAN promoter 871265 872264 0.754696 + . ID=CGI_10025385; scaffold226 GLEAN promoter 872208 873207 0.999676 - . ID=CGI_10025384; scaffold226 GLEAN mRNA 872265 898849 0.754696 + . ID=CGI_10025385; scaffold226 TRF Tandem_Repeat 888822 889252 547 + . . scaffold226 TRF Tandem_Repeat 888822 889252 641 + . . scaffold226 TRF Tandem_Repeat 894275 894314 62 + . . scaffold226 TRF Tandem_Repeat 894702 894733 64 + . . scaffold226 GLEAN mRNA 897412 906304 1 - . ID=CGI_10025386; scaffold226 GLEAN promoter 906305 907304 1 - . ID=CGI_10025386; scaffold226 GLEAN promoter 907670 908669 1 + . ID=CGI_10025387; scaffold226 GLEAN mRNA 908670 911178 1 + . ID=CGI_10025387; scaffold226 GLEAN mRNA 913200 931789 0.655497 - . ID=CGI_10025388; scaffold226 TRF Tandem_Repeat 918937 919042 101 + . . scaffold226 TRF Tandem_Repeat 918937 919041 74 + . . scaffold226 WUBlastX LTR_Gypsy 920232 921296 86 + . . scaffold226 WUBlastX LTR_Gypsy 920466 921299 192 + . . scaffold226 WUBlastX LTR_Gypsy 921350 921733 99 + . . scaffold226 WUBlastX LTR_Gypsy 921398 921721 173 + . . scaffold226 WUBlastX LTR_Gypsy 921740 922456 221 + . . scaffold226 WUBlastX LTR_Gypsy 921740 922651 217 + . . scaffold226 WUBlastX LTR_Gypsy 921740 922240 251 + . . scaffold226 GLEAN promoter 931790 932789 0.655497 - . ID=CGI_10025388; scaffold226 WUBlastX LINE_RTE-X 933967 935067 328 - . . scaffold226 GLEAN promoter 935288 936287 1 + . ID=CGI_10025389; scaffold226 WUBlastX LINE_RTE-X 935792 935938 20 - . . scaffold226 GLEAN mRNA 936288 943711 1 + . ID=CGI_10025389; scaffold226 TRF Tandem_Repeat 939106 939153 78 + . . scaffold226 GLEAN promoter 947165 948164 0.999415 + . ID=CGI_10025390; scaffold226 GLEAN mRNA 948165 951308 0.999415 + . ID=CGI_10025390; scaffold226 TRF Tandem_Repeat 948749 948799 102 + . . scaffold226 GLEAN mRNA 955399 963636 0.991779 - . ID=CGI_10025391; scaffold226 GLEAN promoter 963637 964636 0.991779 - . ID=CGI_10025391; scaffold226 TRF Tandem_Repeat 967691 967733 77 + . . scaffold226 GLEAN promoter 968669 969668 0.999844 + . ID=CGI_10025392; scaffold226 GLEAN mRNA 969669 976180 0.999844 + . ID=CGI_10025392; scaffold226 GLEAN promoter 980651 981650 0.999999 + . ID=CGI_10025393; scaffold226 GLEAN mRNA 981651 984373 0.999999 + . ID=CGI_10025393; scaffold226 GLEAN mRNA 986279 988260 0.999661 - . ID=CGI_10025394; scaffold226 GLEAN promoter 987664 988663 0.811719 + . ID=CGI_10025395; scaffold226 GLEAN promoter 988261 989260 0.999661 - . ID=CGI_10025394; scaffold226 GLEAN mRNA 988664 1007561 0.811719 + . ID=CGI_10025395; scaffold226 GLEAN mRNA 1003797 1005134 0.58996 - . ID=CGI_10025396; scaffold226 GLEAN promoter 1005135 1006134 0.58996 - . ID=CGI_10025396; scaffold226 GLEAN mRNA 1010112 1034104 0.654487 - . ID=CGI_10025397; scaffold226 GLEAN promoter 1034105 1035104 0.654487 - . ID=CGI_10025397; scaffold226 TRF Tandem_Repeat 1034793 1034830 51 + . . scaffold226 TRF Tandem_Repeat 1034794 1034856 56 + . . scaffold226 GLEAN mRNA 1036876 1044046 0.999648 - . ID=CGI_10025398; scaffold226 TRF Tandem_Repeat 1038332 1039735 719 + . . scaffold226 TRF Tandem_Repeat 1038332 1039732 765 + . . scaffold226 TRF Tandem_Repeat 1038349 1039442 647 + . . scaffold226 TRF Tandem_Repeat 1039718 1040133 423 + . . scaffold226 GLEAN promoter 1044047 1045046 0.999648 - . ID=CGI_10025398; scaffold226 GLEAN mRNA 1050620 1061522 0.99513 - . ID=CGI_10025399; scaffold226 WUBlastX LINE_RTE-X 1052354 1052758 92 - . . scaffold226 WUBlastX LINE_RTE-BovB 1052360 1052854 43 - . . scaffold226 WUBlastX LINE_RTE-X 1052839 1053249 44 - . . scaffold226 WUBlastX LINE_RTE-X 1052956 1053261 115 - . . scaffold226 WUBlastX LINE_L2 1052980 1053387 33 - . . scaffold226 WUBlastX DNA_TcMar-Marin 1057662 1057877 65 - . . scaffold226 WUBlastX DNA_TcMar-Marin 1058010 1058081 20 - . . scaffold226 GLEAN promoter 1059963 1060962 0.499999 + . ID=CGI_10025400; scaffold226 GLEAN mRNA 1060963 1065847 0.499999 + . ID=CGI_10025400; scaffold226 GLEAN promoter 1061523 1062522 0.99513 - . ID=CGI_10025399; scaffold227 GLEAN promoter 1 387 1 + . ID=CGI_10015801; scaffold227 GLEAN mRNA 388 1673 1 + . ID=CGI_10015801; scaffold227 TRF Tandem_Repeat 6086 6118 66 + . . scaffold227 TRF Tandem_Repeat 10391 10444 74 + . . scaffold227 TRF Tandem_Repeat 10911 10974 128 + . . scaffold227 GLEAN mRNA 13223 16802 0.987801 - . ID=CGI_10015802; scaffold227 GLEAN promoter 16803 17802 0.987801 - . ID=CGI_10015802; scaffold227 TRF Tandem_Repeat 21420 21511 103 + . . scaffold227 TRF Tandem_Repeat 21588 21744 156 + . . scaffold227 TRF Tandem_Repeat 21799 21896 90 + . . scaffold227 TRF Tandem_Repeat 21975 22089 140 + . . scaffold227 GLEAN mRNA 30688 32812 0.449006 - . ID=CGI_10015803; scaffold227 TRF Tandem_Repeat 31081 31184 181 + . . scaffold227 GLEAN promoter 32813 33812 0.449006 - . ID=CGI_10015803; scaffold227 TRF Tandem_Repeat 33668 33699 64 + . . scaffold227 GLEAN mRNA 37235 56992 1 - . ID=CGI_10015804; scaffold227 GLEAN promoter 42711 43710 0.497485 + . ID=CGI_10015805; scaffold227 GLEAN mRNA 43711 57979 0.497485 + . ID=CGI_10015805; scaffold227 GLEAN promoter 56993 57992 1 - . ID=CGI_10015804; scaffold227 GLEAN promoter 67978 68977 0.780995 + . ID=CGI_10015806; scaffold227 GLEAN mRNA 68978 71064 0.780995 + . ID=CGI_10015806; scaffold227 GLEAN promoter 71338 72337 1 + . ID=CGI_10015807; scaffold227 GLEAN mRNA 72338 74945 1 + . ID=CGI_10015807; scaffold227 TRF Tandem_Repeat 73677 73792 207 + . . scaffold227 TRF Tandem_Repeat 75766 75798 59 + . . scaffold227 GLEAN promoter 77678 78677 0.999676 + . ID=CGI_10015808; scaffold227 GLEAN mRNA 78678 82970 0.999676 + . ID=CGI_10015808; scaffold227 TRF Tandem_Repeat 79263 79298 72 + . . scaffold227 TRF Tandem_Repeat 79344 79451 157 + . . scaffold227 GLEAN promoter 84207 85206 0.999999 + . ID=CGI_10015809; scaffold227 GLEAN mRNA 85207 87285 0.999999 + . ID=CGI_10015809; scaffold227 TRF Tandem_Repeat 86428 86542 212 + . . scaffold227 GLEAN promoter 91280 92279 0.593391 + . ID=CGI_10015810; scaffold227 GLEAN mRNA 92280 106057 0.593391 + . ID=CGI_10015810; scaffold227 TRF Tandem_Repeat 101399 101456 116 + . . scaffold227 GLEAN promoter 105557 106556 0.999372 + . ID=CGI_10015811; scaffold227 TRF Tandem_Repeat 106379 106446 136 + . . scaffold227 GLEAN mRNA 106557 106757 0.999372 + . ID=CGI_10015811; scaffold227 GLEAN mRNA 107375 109980 0.999929 - . ID=CGI_10015812; scaffold227 GLEAN promoter 109981 110980 0.999929 - . ID=CGI_10015812; scaffold227 GLEAN promoter 110038 111037 0.999372 + . ID=CGI_10015813; scaffold227 GLEAN mRNA 111038 111499 0.999372 + . ID=CGI_10015813; scaffold227 TRF Tandem_Repeat 114960 114984 50 + . . scaffold227 GLEAN mRNA 116623 124426 0.818354 - . ID=CGI_10015814; scaffold227 GLEAN promoter 124427 125426 0.818354 - . ID=CGI_10015814; scaffold227 GLEAN promoter 129866 130865 0.648334 + . ID=CGI_10015815; scaffold227 GLEAN mRNA 130866 134136 0.648334 + . ID=CGI_10015815; scaffold227 GLEAN mRNA 144863 151720 0.999983 - . ID=CGI_10015816; scaffold227 TRF Tandem_Repeat 150404 150454 102 + . . scaffold227 GLEAN promoter 151721 152720 0.999983 - . ID=CGI_10015816; scaffold227 TRF Tandem_Repeat 152839 152873 52 + . . scaffold227 TRF Tandem_Repeat 156025 156089 121 + . . scaffold227 GLEAN promoter 158649 159648 1 + . ID=CGI_10015817; scaffold227 GLEAN mRNA 159649 172205 1 + . ID=CGI_10015817; scaffold227 TRF Tandem_Repeat 175786 175864 74 + . . scaffold227 TRF Tandem_Repeat 176922 177666 992 + . . scaffold227 TRF Tandem_Repeat 177781 177818 76 + . . scaffold227 GLEAN mRNA 179812 199193 0.544411 - . ID=CGI_10015818; scaffold227 TRF Tandem_Repeat 183583 184056 894 + . . scaffold227 TRF Tandem_Repeat 191184 191231 96 + . . scaffold227 TRF Tandem_Repeat 196037 196081 90 + . . scaffold227 GLEAN promoter 199194 200193 0.544411 - . ID=CGI_10015818; scaffold227 GLEAN promoter 200049 201048 0.999676 + . ID=CGI_10015819; scaffold227 TRF Tandem_Repeat 200605 200649 90 + . . scaffold227 GLEAN mRNA 201049 207038 0.999676 + . ID=CGI_10015819; scaffold227 TRF Tandem_Repeat 201178 201208 53 + . . scaffold227 TRF Tandem_Repeat 202407 202460 108 + . . scaffold227 TRF Tandem_Repeat 203647 203692 92 + . . scaffold227 GLEAN promoter 207728 208727 0.628715 + . ID=CGI_10015820; scaffold227 GLEAN mRNA 208728 209489 0.628715 + . ID=CGI_10015820; scaffold227 GLEAN mRNA 210767 212892 0.999572 - . ID=CGI_10015821; scaffold227 GLEAN promoter 212893 213892 0.999572 - . ID=CGI_10015821; scaffold227 GLEAN mRNA 214879 215865 0.444858 - . ID=CGI_10015822; scaffold227 GLEAN promoter 215866 216865 0.444858 - . ID=CGI_10015822; scaffold227 TRF Tandem_Repeat 216358 216486 86 + . . scaffold227 TRF Tandem_Repeat 216395 216486 121 + . . scaffold227 TRF Tandem_Repeat 220326 220367 84 + . . scaffold227 GLEAN mRNA 224191 224622 0.393792 - . ID=CGI_10015823; scaffold227 GLEAN promoter 224623 225622 0.393792 - . ID=CGI_10015823; scaffold227 TRF Tandem_Repeat 225713 225826 70 + . . scaffold227 TRF Tandem_Repeat 226431 226524 116 + . . scaffold227 TRF Tandem_Repeat 226571 226659 128 + . . scaffold227 GLEAN promoter 228183 229182 0.564731 + . ID=CGI_10015824; scaffold227 GLEAN mRNA 229183 229452 0.564731 + . ID=CGI_10015824; scaffold227 WUBlastX LINE_RTE-X 231369 231752 51 + . . scaffold227 WUBlastX LINE_RTE-X 231945 232940 100 + . . scaffold227 TRF Tandem_Repeat 253460 254815 2046 + . . scaffold227 TRF Tandem_Repeat 254977 255018 50 + . . scaffold227 GLEAN mRNA 255972 260292 0.977715 - . ID=CGI_10015825; scaffold227 GLEAN promoter 260293 261292 0.977715 - . ID=CGI_10015825; scaffold227 TRF Tandem_Repeat 272526 272831 459 + . . scaffold227 TRF Tandem_Repeat 272526 272828 579 + . . scaffold227 TRF Tandem_Repeat 278484 278513 51 + . . scaffold227 WUBlastX LINE_Penelope 295011 295187 48 + . . scaffold227 WUBlastX LINE_Penelope 295050 295196 56 + . . scaffold227 TRF Tandem_Repeat 300503 300573 56 + . . scaffold227 TRF Tandem_Repeat 300523 300555 66 + . . scaffold227 TRF Tandem_Repeat 301680 302194 593 + . . scaffold227 WUBlastX LINE_Penelope 305506 305655 26 + . . scaffold227 WUBlastX LINE_Penelope 305512 305622 41 + . . scaffold227 WUBlastX LINE_Penelope 305660 305737 21 + . . scaffold227 WUBlastX LINE_Penelope 305761 305916 50 + . . scaffold227 WUBlastX LINE_Penelope 305895 306413 89 + . . scaffold227 WUBlastX LINE_Penelope 307084 307311 28 + . . scaffold227 WUBlastX LINE_Penelope 307210 307296 30 + . . scaffold227 WUBlastX LINE_Penelope 307284 307595 101 + . . scaffold227 WUBlastX LINE_Penelope 307314 308150 70 + . . scaffold227 WUBlastX LINE_Penelope 310125 310331 67 + . . scaffold227 WUBlastX LINE_Penelope 310137 310295 72 + . . scaffold227 WUBlastX DNA_TcMar-Marin 315285 315599 130 + . . scaffold227 WUBlastX DNA_TcMar-Marin 315589 315933 123 + . . scaffold227 WUBlastX DNA_TcMar-Marin 315667 315924 134 + . . scaffold227 WUBlastX DNA_TcMar-Marin 316167 316508 128 + . . scaffold227 WUBlastX DNA_TcMar-Marin 316230 316511 166 + . . scaffold227 TRF Tandem_Repeat 323673 323749 50 + . . scaffold227 GLEAN mRNA 324687 340491 0.531648 - . ID=CGI_10015826; scaffold227 TRF Tandem_Repeat 327331 327387 114 + . . scaffold227 GLEAN promoter 340492 341491 0.531648 - . ID=CGI_10015826; scaffold227 GLEAN promoter 341677 342676 0.855234 + . ID=CGI_10015827; scaffold227 GLEAN mRNA 342677 349553 0.855234 + . ID=CGI_10015827; scaffold227 TRF Tandem_Repeat 342767 342823 62 + . . scaffold227 TRF Tandem_Repeat 346515 346585 135 + . . scaffold227 TRF Tandem_Repeat 365551 365625 134 + . . scaffold227 GLEAN promoter 366430 367429 0.993321 + . ID=CGI_10015828; scaffold227 GLEAN mRNA 367430 383712 0.993321 + . ID=CGI_10015828; scaffold227 TRF Tandem_Repeat 384600 384639 80 + . . scaffold227 TRF Tandem_Repeat 388719 388956 467 + . . scaffold227 GLEAN mRNA 389032 390988 1 - . ID=CGI_10015829; scaffold227 GLEAN promoter 390989 391988 1 - . ID=CGI_10015829; scaffold227 GLEAN mRNA 391078 400899 1 - . ID=CGI_10015830; scaffold227 TRF Tandem_Repeat 391226 391370 109 + . . scaffold227 TRF Tandem_Repeat 391259 391365 127 + . . scaffold227 GLEAN promoter 400900 401899 1 - . ID=CGI_10015830; scaffold227 GLEAN mRNA 401344 417611 0.777653 - . ID=CGI_10015831; scaffold227 GLEAN promoter 417612 418611 0.777653 - . ID=CGI_10015831; scaffold227 TRF Tandem_Repeat 432317 432397 82 + . . scaffold230 GLEAN promoter 2275 3274 1 + . ID=CGI_10011248; scaffold230 GLEAN mRNA 3275 33312 1 + . ID=CGI_10011248; scaffold230 GLEAN mRNA 41195 58546 0.998823 - . ID=CGI_10011249; scaffold230 GLEAN promoter 58547 59546 0.998823 - . ID=CGI_10011249; scaffold230 TRF Tandem_Repeat 59654 59696 86 + . . scaffold230 WUBlastX DNA_Crypton 65383 65865 35 + . . scaffold230 WUBlastX LINE_L1-Tx1 73082 73216 20 + . . scaffold230 WUBlastX LINE_RTE-X 73303 74562 261 + . . scaffold230 WUBlastX LINE_RTE-X 73585 74592 471 + . . scaffold230 WUBlastX LINE_RTE-X 74606 75571 480 + . . scaffold230 TRF Tandem_Repeat 75720 75756 74 + . . scaffold230 GLEAN promoter 98722 99721 0.761207 + . ID=CGI_10011250; scaffold230 GLEAN mRNA 99722 112063 0.761207 + . ID=CGI_10011250; scaffold230 TRF Tandem_Repeat 113305 113330 52 + . . scaffold230 GLEAN mRNA 126666 144461 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 128724 128753 51 + . . scaffold230 TRF Tandem_Repeat 128753 128798 92 + . . scaffold230 WUBlastX DNA_hAT-Tip100 129539 129691 29 - . . scaffold230 WUBlastX DNA_hAT-Tip100 129566 129691 44 - . . scaffold230 WUBlastX DNA_hAT-Tip100 129640 129780 55 - . . scaffold230 WUBlastX DNA_hAT-Tip100 129691 129777 68 - . . scaffold230 WUBlastX DNA_hAT-Tip100 129691 129825 56 - . . scaffold230 WUBlastX DNA_hAT-Tip100 129697 129885 44 - . . scaffold230 WUBlastX DNA_hAT-Tip100 129903 130286 130 - . . scaffold230 WUBlastX DNA_hAT-Tip100 130283 131179 267 - . . scaffold230 WUBlastX DNA_hAT-Tip100 130771 131721 321 - . . scaffold230 TRF Tandem_Repeat 132858 133444 540 + . . scaffold230 TRF Tandem_Repeat 132858 133444 759 + . . scaffold230 TRF Tandem_Repeat 136765 138132 2105 + . . scaffold230 TRF Tandem_Repeat 136765 138132 2119 + . . scaffold230 TRF Tandem_Repeat 143290 143349 93 + . . scaffold230 GLEAN promoter 144462 145461 0.534748 - . ID=CGI_10011251; scaffold230 TRF Tandem_Repeat 144575 144641 80 + . . scaffold230 TRF Tandem_Repeat 163788 164136 475 + . . scaffold230 TRF Tandem_Repeat 163789 164177 233 + . . scaffold230 TRF Tandem_Repeat 175456 175507 104 + . . scaffold230 TRF Tandem_Repeat 175838 175886 98 + . . scaffold230 GLEAN mRNA 178498 220276 0.270873 - . ID=CGI_10011252; scaffold230 TRF Tandem_Repeat 187215 187245 62 + . . scaffold230 WUBlastX LTR_Ngaro 196310 196600 47 + . . scaffold230 WUBlastX LTR_Ngaro 196599 196892 69 + . . scaffold230 TRF Tandem_Repeat 203128 203152 50 + . . scaffold230 TRF Tandem_Repeat 204279 204361 69 + . . scaffold230 TRF Tandem_Repeat 204438 204513 55 + . . scaffold230 TRF Tandem_Repeat 205198 205287 65 + . . scaffold230 WUBlastX LINE_Penelope 208520 209572 601 + . . scaffold230 WUBlastX LINE_Penelope 209757 210194 162 + . . scaffold230 WUBlastX LINE_Penelope 210109 210501 100 + . . scaffold230 WUBlastX LTR_DIRS 215049 215945 308 - . . scaffold230 WUBlastX LTR_DIRS 215999 217171 441 - . . scaffold230 WUBlastX LTR_DIRS 216185 217171 474 - . . scaffold230 WUBlastX LTR_Gypsy 218503 218973 57 - . . scaffold230 WUBlastX LTR_Gypsy 218575 218991 71 - . . scaffold230 WUBlastX LTR_DIRS 218641 219048 328 - . . scaffold230 WUBlastX LTR_Gypsy 218641 219426 106 - . . scaffold230 WUBlastX LTR_DIRS 218644 219177 281 - . . scaffold230 GLEAN promoter 220277 221276 0.270873 - . ID=CGI_10011252; scaffold230 GLEAN mRNA 221247 246633 0.544526 - . ID=CGI_10011253; scaffold230 GLEAN promoter 246634 247633 0.544526 - . ID=CGI_10011253; scaffold230 GLEAN mRNA 249649 283875 0.439776 - . ID=CGI_10011254; scaffold230 WUBlastX LTR_Gypsy 251654 251869 64 + . . scaffold230 WUBlastX LTR_Gypsy 251877 252395 227 + . . scaffold230 WUBlastX LTR_Gypsy 251973 252386 252 + . . scaffold230 WUBlastX LTR_Gypsy 252391 252714 274 + . . scaffold230 WUBlastX LTR_ERV1 252418 252777 81 + . . scaffold230 WUBlastX LTR_Gypsy 252704 252859 51 + . . scaffold230 WUBlastX LTR_Gypsy 252704 252826 66 + . . scaffold230 TRF Tandem_Repeat 268489 268557 57 + . . scaffold230 GLEAN promoter 283876 284875 0.439776 - . ID=CGI_10011254; scaffold232 TRF Tandem_Repeat 750 821 144 + . . scaffold232 TRF Tandem_Repeat 2334 2372 78 + . . scaffold232 TRF Tandem_Repeat 3378 3441 119 + . . scaffold232 TRF Tandem_Repeat 6128 6213 172 + . . scaffold232 TRF Tandem_Repeat 6890 6950 113 + . . scaffold232 GLEAN promoter 7009 8008 0.999676 + . ID=CGI_10004958; scaffold232 GLEAN mRNA 8009 18679 0.999676 + . ID=CGI_10004958; scaffold232 TRF Tandem_Repeat 9444 9492 98 + . . scaffold232 TRF Tandem_Repeat 28512 28564 106 + . . scaffold232 TRF Tandem_Repeat 34030 34093 119 + . . scaffold232 TRF Tandem_Repeat 35017 35243 247 + . . scaffold232 TRF Tandem_Repeat 35017 35243 238 + . . scaffold232 TRF Tandem_Repeat 35017 35243 238 + . . scaffold232 TRF Tandem_Repeat 37459 37509 102 + . . scaffold232 TRF Tandem_Repeat 38318 38366 98 + . . scaffold232 TRF Tandem_Repeat 46959 47001 86 + . . scaffold232 GLEAN mRNA 50674 52593 0.944277 - . ID=CGI_10004959; scaffold232 GLEAN promoter 52594 53593 0.944277 - . ID=CGI_10004959; scaffold232 GLEAN mRNA 55928 57125 1 - . ID=CGI_10004960; scaffold232 TRF Tandem_Repeat 56789 56831 86 + . . scaffold232 TRF Tandem_Repeat 56952 56994 86 + . . scaffold232 GLEAN promoter 57126 58125 1 - . ID=CGI_10004960; scaffold232 TRF Tandem_Repeat 60899 60938 80 + . . scaffold232 WUBlastX DNA_Maverick 101694 102350 104 - . . scaffold232 WUBlastX DNA_Maverick 101805 102419 121 - . . scaffold232 GLEAN promoter 101962 102961 0.933023 + . ID=CGI_10004961; scaffold232 GLEAN mRNA 102962 104824 0.933023 + . ID=CGI_10004961; scaffold23358 GLEAN mRNA 1951 2142 0.999372 - . ID=CGI_10000109; scaffold23358 GLEAN promoter 2143 2158 0.999372 - . ID=CGI_10000109; scaffold234 GLEAN promoter 1 647 0.69447 + . ID=CGI_10000438; scaffold234 GLEAN mRNA 648 860 0.69447 + . ID=CGI_10000438; scaffold235 GLEAN promoter 1 50 1 + . ID=CGI_10000157; scaffold235 GLEAN mRNA 51 1763 1 + . ID=CGI_10000157; scaffold236 TRF Tandem_Repeat 5813 5845 50 + . . scaffold236 TRF Tandem_Repeat 13812 14058 186 + . . scaffold236 TRF Tandem_Repeat 13847 14058 85 + . . scaffold236 GLEAN promoter 13915 14914 0.618241 + . ID=CGI_10018131; scaffold236 GLEAN mRNA 14915 15088 0.618241 + . ID=CGI_10018131; scaffold236 TRF Tandem_Repeat 17363 17535 173 + . . scaffold236 GLEAN promoter 17668 18667 1 + . ID=CGI_10018132; scaffold236 GLEAN mRNA 18668 19882 1 + . ID=CGI_10018132; scaffold236 GLEAN promoter 22221 23220 0.999675 + . ID=CGI_10018133; scaffold236 GLEAN mRNA 23221 27434 0.999675 + . ID=CGI_10018133; scaffold236 TRF Tandem_Repeat 31998 32145 120 + . . scaffold236 TRF Tandem_Repeat 32155 32342 105 + . . scaffold236 TRF Tandem_Repeat 32436 32583 120 + . . scaffold236 TRF Tandem_Repeat 32593 32838 133 + . . scaffold236 TRF Tandem_Repeat 32593 32838 196 + . . scaffold236 GLEAN mRNA 33147 36838 1 - . ID=CGI_10018134; scaffold236 TRF Tandem_Repeat 33626 33650 50 + . . scaffold236 GLEAN promoter 36193 37192 0.565289 + . ID=CGI_10018135; scaffold236 GLEAN promoter 36839 37838 1 - . ID=CGI_10018134; scaffold236 GLEAN mRNA 37193 44540 0.565289 + . ID=CGI_10018135; scaffold236 WUBlastX LTR_ERV1 37599 37994 41 + . . scaffold236 WUBlastX LINE_L2 37716 38102 62 + . . scaffold236 WUBlastX LINE_L2 37740 38174 51 + . . scaffold236 TRF Tandem_Repeat 38300 38329 60 + . . scaffold236 TRF Tandem_Repeat 41030 41072 79 + . . scaffold236 TRF Tandem_Repeat 46340 46365 52 + . . scaffold236 TRF Tandem_Repeat 46748 46789 50 + . . scaffold236 GLEAN mRNA 78371 100774 0.768352 - . ID=CGI_10018136; scaffold236 TRF Tandem_Repeat 85271 85304 52 + . . scaffold236 TRF Tandem_Repeat 100149 100214 132 + . . scaffold236 GLEAN promoter 100775 101774 0.768352 - . ID=CGI_10018136; scaffold236 TRF Tandem_Repeat 110159 110221 126 + . . scaffold236 TRF Tandem_Repeat 111679 111735 114 + . . scaffold236 TRF Tandem_Repeat 122786 122833 78 + . . scaffold236 WUBlastX LINE_Penelope 143526 143921 65 - . . scaffold236 TRF Tandem_Repeat 160852 160886 61 + . . scaffold236 TRF Tandem_Repeat 160904 161375 548 + . . scaffold236 TRF Tandem_Repeat 160904 161375 661 + . . scaffold236 GLEAN mRNA 163247 173211 1 - . ID=CGI_10018137; scaffold236 TRF Tandem_Repeat 168044 168203 203 + . . scaffold236 TRF Tandem_Repeat 172133 172174 59 + . . scaffold236 GLEAN promoter 173212 174211 1 - . ID=CGI_10018137; scaffold236 WUBlastX DNA_Harbinger 196092 196757 78 + . . scaffold236 TRF Tandem_Repeat 198138 198194 107 + . . scaffold236 GLEAN promoter 226720 227719 0.996819 + . ID=CGI_10018138; scaffold236 GLEAN mRNA 227720 229392 0.996819 + . ID=CGI_10018138; scaffold236 WUBlastX DNA_P 227759 228019 72 + . . scaffold236 GLEAN promoter 228568 229567 1 + . ID=CGI_10018139; scaffold236 GLEAN mRNA 229568 231611 1 + . ID=CGI_10018139; scaffold236 WUBlastX DNA_Kolobok 229601 230119 272 + . . scaffold236 WUBlastX DNA_Kolobok 230235 230435 127 + . . scaffold236 WUBlastX DNA_Kolobok 230515 230892 88 + . . scaffold236 WUBlastX DNA_Kolobok 230557 230817 104 + . . scaffold236 WUBlastX DNA_Kolobok 230894 231106 77 + . . scaffold236 WUBlastX DNA_Kolobok 231169 231339 115 + . . scaffold236 GLEAN mRNA 231446 232793 0.958487 - . ID=CGI_10018140; scaffold236 WUBlastX DNA_Kolobok 231620 231766 71 - . . scaffold236 WUBlastX DNA_Kolobok 231620 231805 65 - . . scaffold236 WUBlastX DNA_Kolobok 232070 232252 31 - . . scaffold236 GLEAN promoter 232794 233793 0.958487 - . ID=CGI_10018140; scaffold236 GLEAN mRNA 236826 254501 0.904915 - . ID=CGI_10018141; scaffold236 TRF Tandem_Repeat 249298 249362 67 + . . scaffold236 TRF Tandem_Repeat 249954 249996 77 + . . scaffold236 GLEAN promoter 254502 255501 0.904915 - . ID=CGI_10018141; scaffold236 GLEAN mRNA 264591 272449 0.93078 - . ID=CGI_10018142; scaffold236 GLEAN promoter 272450 273449 0.93078 - . ID=CGI_10018142; scaffold236 TRF Tandem_Repeat 278950 278982 66 + . . scaffold236 GLEAN mRNA 285300 302909 1 - . ID=CGI_10018143; scaffold236 TRF Tandem_Repeat 287166 287312 197 + . . scaffold236 TRF Tandem_Repeat 291318 291375 73 + . . scaffold236 TRF Tandem_Repeat 291318 291363 65 + . . scaffold236 TRF Tandem_Repeat 291318 291375 91 + . . scaffold236 TRF Tandem_Repeat 299007 299071 85 + . . scaffold236 GLEAN promoter 302910 303909 1 - . ID=CGI_10018143; scaffold236 GLEAN promoter 303696 304695 0.59015 + . ID=CGI_10018144; scaffold236 GLEAN mRNA 304696 305955 0.59015 + . ID=CGI_10018144; scaffold236 TRF Tandem_Repeat 307129 307161 66 + . . scaffold236 GLEAN promoter 308013 309012 0.999068 + . ID=CGI_10018145; scaffold236 GLEAN mRNA 309013 310911 0.999068 + . ID=CGI_10018145; scaffold236 TRF Tandem_Repeat 313072 313138 107 + . . scaffold236 WUBlastX LINE_L2 319166 319435 71 - . . scaffold236 WUBlastX LINE_CR1-L2 319366 319620 84 - . . scaffold236 GLEAN promoter 325477 326476 0.995186 + . ID=CGI_10018146; scaffold236 GLEAN mRNA 326477 328363 0.995186 + . ID=CGI_10018146; scaffold236 TRF Tandem_Repeat 332830 332890 52 + . . scaffold236 GLEAN mRNA 333517 335061 0.98781 - . ID=CGI_10018147; scaffold236 GLEAN promoter 335062 336061 0.98781 - . ID=CGI_10018147; scaffold236 GLEAN promoter 340178 341177 0.999068 + . ID=CGI_10018148; scaffold236 GLEAN mRNA 341178 343079 0.999068 + . ID=CGI_10018148; scaffold236 GLEAN mRNA 344574 345448 0.989797 - . ID=CGI_10018149; scaffold236 GLEAN promoter 345449 346448 0.989797 - . ID=CGI_10018149; scaffold236 TRF Tandem_Repeat 347149 347210 81 + . . scaffold236 GLEAN mRNA 351176 354691 0.985886 - . ID=CGI_10018150; scaffold236 GLEAN promoter 354155 355154 0.69447 + . ID=CGI_10018151; scaffold236 GLEAN promoter 354692 355691 0.985886 - . ID=CGI_10018150; scaffold236 GLEAN mRNA 355155 356399 0.69447 + . ID=CGI_10018151; scaffold236 GLEAN mRNA 357492 357731 1 - . ID=CGI_10018152; scaffold236 GLEAN promoter 357732 358731 1 - . ID=CGI_10018152; scaffold236 TRF Tandem_Repeat 360337 360384 96 + . . scaffold236 TRF Tandem_Repeat 361011 361077 134 + . . scaffold236 WUBlastX LINE_CR1 361100 361402 177 + . . scaffold236 WUBlastX LINE_CR1-L2 361127 361510 62 + . . scaffold236 GLEAN promoter 361292 362291 0.836238 + . ID=CGI_10018153; scaffold236 GLEAN mRNA 362292 365922 0.836238 + . ID=CGI_10018153; scaffold236 TRF Tandem_Repeat 367720 367749 51 + . . scaffold236 GLEAN mRNA 369392 370330 1 - . ID=CGI_10018154; scaffold236 GLEAN promoter 370331 371330 1 - . ID=CGI_10018154; scaffold236 GLEAN promoter 376071 377070 0.556903 + . ID=CGI_10018155; scaffold236 GLEAN mRNA 377071 387159 0.556903 + . ID=CGI_10018155; scaffold236 TRF Tandem_Repeat 378484 378522 78 + . . scaffold236 TRF Tandem_Repeat 380391 380440 59 + . . scaffold236 TRF Tandem_Repeat 382201 382265 67 + . . scaffold236 GLEAN promoter 386339 387338 0.999735 + . ID=CGI_10018156; scaffold236 GLEAN mRNA 387339 391318 0.999735 + . ID=CGI_10018156; scaffold236 TRF Tandem_Repeat 388591 388648 73 + . . scaffold236 TRF Tandem_Repeat 388592 388645 56 + . . scaffold236 TRF Tandem_Repeat 390881 390945 112 + . . scaffold236 TRF Tandem_Repeat 403636 404423 993 + . . scaffold236 TRF Tandem_Repeat 404466 404529 92 + . . scaffold236 WUBlastX LINE_L2 408007 409032 240 - . . scaffold236 WUBlastX LINE_CR1-L2 408367 409020 260 - . . scaffold236 WUBlastX LINE_Jockey 408649 409101 47 - . . scaffold236 WUBlastX LINE_CR1 409788 409958 39 - . . scaffold236 WUBlastX LINE_CR1 409820 410170 83 - . . scaffold236 WUBlastX LINE_L2 409880 410170 140 - . . scaffold236 WUBlastX LINE_CR1-L2 409949 410170 184 - . . scaffold236 WUBlastX LINE_L2 410152 410736 268 - . . scaffold236 WUBlastX LINE_CR1-L2 410745 411002 96 - . . scaffold236 WUBlastX LINE_CR1-L2 410745 411164 91 - . . scaffold236 WUBlastX LINE_L2 412189 412671 101 - . . scaffold236 WUBlastX LINE_L2 412300 412665 191 - . . scaffold236 WUBlastX LINE_CR1-L2 412321 412743 99 - . . scaffold236 WUBlastX LINE_CR1-L2 412327 413028 84 - . . scaffold236 WUBlastX LINE_L2 413535 413702 61 - . . scaffold236 WUBlastX LINE_L2 413692 413808 25 - . . scaffold236 WUBlastX LINE_L2 413767 414030 32 - . . scaffold236 TRF Tandem_Repeat 416472 416507 72 + . . scaffold236 TRF Tandem_Repeat 416970 417001 64 + . . scaffold236 TRF Tandem_Repeat 417400 417449 73 + . . scaffold236 GLEAN promoter 418028 419027 0.738287 + . ID=CGI_10018157; scaffold236 GLEAN mRNA 419028 434234 0.738287 + . ID=CGI_10018157; scaffold236 TRF Tandem_Repeat 424323 424349 54 + . . scaffold236 GLEAN promoter 433873 434872 0.999999 + . ID=CGI_10018158; scaffold236 TRF Tandem_Repeat 434272 434653 518 + . . scaffold236 TRF Tandem_Repeat 434272 434616 588 + . . scaffold236 GLEAN mRNA 434873 440395 0.999999 + . ID=CGI_10018158; scaffold236 GLEAN mRNA 470246 470647 0.999048 - . ID=CGI_10018160; scaffold236 GLEAN promoter 470648 471647 0.999048 - . ID=CGI_10018160; scaffold236 WUBlastX DNA_TcMar-Marin 483218 483562 178 - . . scaffold236 WUBlastX DNA_TcMar-Marin 483332 483610 61 - . . scaffold236 WUBlastX DNA_TcMar-Marin 483606 484265 291 - . . scaffold236 TRF Tandem_Repeat 487359 487399 64 + . . scaffold236 TRF Tandem_Repeat 487502 487540 69 + . . scaffold236 GLEAN mRNA 487648 490170 0.821779 - . ID=CGI_10018161; scaffold236 GLEAN promoter 490171 491170 0.821779 - . ID=CGI_10018161; scaffold236 WUBlastX DNA_Kolobok 498652 498759 28 - . . scaffold236 WUBlastX DNA_Kolobok 499488 499718 34 - . . scaffold236 GLEAN mRNA 506625 527982 0.773196 - . ID=CGI_10018162; scaffold236 TRF Tandem_Repeat 515954 515986 57 + . . scaffold236 GLEAN promoter 527983 528982 0.773196 - . ID=CGI_10018162; scaffold237 TRF Tandem_Repeat 4292 4360 129 + . . scaffold237 WUBlastX DNA_TcMar-Pogo 6456 7502 352 - . . scaffold237 WUBlastX DNA_TcMar-Pogo 7576 8109 257 - . . scaffold237 TRF Tandem_Repeat 15014 15069 67 + . . scaffold237 TRF Tandem_Repeat 15014 15066 79 + . . scaffold237 TRF Tandem_Repeat 20251 20319 68 + . . scaffold237 TRF Tandem_Repeat 21458 21563 99 + . . scaffold237 TRF Tandem_Repeat 24229 24284 58 + . . scaffold237 TRF Tandem_Repeat 24229 24281 88 + . . scaffold237 TRF Tandem_Repeat 26471 27251 1115 + . . scaffold237 TRF Tandem_Repeat 27895 27945 66 + . . scaffold237 TRF Tandem_Repeat 27895 27942 51 + . . scaffold237 TRF Tandem_Repeat 27896 27938 68 + . . scaffold237 TRF Tandem_Repeat 27949 28787 1134 + . . scaffold237 TRF Tandem_Repeat 29671 29696 52 + . . scaffold237 WUBlastX LINE_L1 29842 29982 42 + . . scaffold237 WUBlastX LINE_RTE-BovB 42654 42917 91 - . . scaffold237 WUBlastX LINE_RTE-BovB 43878 44552 211 - . . scaffold237 WUBlastX LINE_RTE-BovB 44239 44892 250 - . . scaffold237 WUBlastX LINE_RTE-BovB 44660 45040 89 - . . scaffold237 WUBlastX LINE_RTE-BovB 44660 45169 53 - . . scaffold237 WUBlastX LINE_RTE-BovB 44915 45256 49 - . . scaffold237 WUBlastX LINE_RTE-BovB 45548 45649 21 - . . scaffold237 WUBlastX LTR_Gypsy 49332 49433 59 + . . scaffold237 WUBlastX LTR_Gypsy 49819 49938 28 + . . scaffold237 TRF Tandem_Repeat 60294 60346 106 + . . scaffold237 GLEAN promoter 68835 69834 0.571793 + . ID=CGI_10021565; scaffold237 WUBlastX DNA_IS4EU 68908 69807 104 + . . scaffold237 WUBlastX DNA_IS4EU 69223 69816 175 + . . scaffold237 GLEAN mRNA 69835 70374 0.571793 + . ID=CGI_10021565; scaffold237 WUBlastX LINE_L2 78825 79406 225 - . . scaffold237 TRF Tandem_Repeat 79649 79693 63 + . . scaffold237 TRF Tandem_Repeat 80774 81225 428 + . . scaffold237 WUBlastX LINE_Proto2 92506 93024 20 - . . scaffold237 GLEAN mRNA 94026 122775 0.288871 - . ID=CGI_10021566; scaffold237 TRF Tandem_Repeat 97045 97078 68 + . . scaffold237 GLEAN promoter 122776 123775 0.288871 - . ID=CGI_10021566; scaffold237 GLEAN mRNA 123079 131575 1 - . ID=CGI_10021567; scaffold237 TRF Tandem_Repeat 125878 126134 424 + . . scaffold237 TRF Tandem_Repeat 126693 126932 180 + . . scaffold237 TRF Tandem_Repeat 126693 126932 167 + . . scaffold237 GLEAN promoter 131576 132575 1 - . ID=CGI_10021567; scaffold237 TRF Tandem_Repeat 133823 133902 56 + . . scaffold237 TRF Tandem_Repeat 136852 136879 56 + . . scaffold237 TRF Tandem_Repeat 138950 138993 88 + . . scaffold237 TRF Tandem_Repeat 148080 148131 97 + . . scaffold237 GLEAN mRNA 150238 179708 0.999347 - . ID=CGI_10021568; scaffold237 TRF Tandem_Repeat 156620 156753 169 + . . scaffold237 TRF Tandem_Repeat 159238 159440 244 + . . scaffold237 TRF Tandem_Repeat 162507 163867 2454 + . . scaffold237 TRF Tandem_Repeat 162507 163867 2415 + . . scaffold237 TRF Tandem_Repeat 164492 164754 436 + . . scaffold237 TRF Tandem_Repeat 167987 168202 233 + . . scaffold237 TRF Tandem_Repeat 170166 170363 360 + . . scaffold237 GLEAN promoter 179709 180708 0.999347 - . ID=CGI_10021568; scaffold237 GLEAN mRNA 180933 195996 0.377455 - . ID=CGI_10021569; scaffold237 TRF Tandem_Repeat 183728 183842 169 + . . scaffold237 TRF Tandem_Repeat 183728 183880 146 + . . scaffold237 TRF Tandem_Repeat 183756 183899 60 + . . scaffold237 TRF Tandem_Repeat 189736 190898 964 + . . scaffold237 TRF Tandem_Repeat 189741 190429 946 + . . scaffold237 TRF Tandem_Repeat 190179 190323 87 + . . scaffold237 TRF Tandem_Repeat 190631 190915 419 + . . scaffold237 TRF Tandem_Repeat 190717 190862 83 + . . scaffold237 GLEAN promoter 195997 196996 0.377455 - . ID=CGI_10021569; scaffold237 GLEAN promoter 196985 197984 0.999999 + . ID=CGI_10021570; scaffold237 GLEAN mRNA 197985 198416 0.999999 + . ID=CGI_10021570; scaffold237 GLEAN promoter 200607 201606 0.998715 + . ID=CGI_10021571; scaffold237 WUBlastX LTR_Gypsy 200647 201174 88 + . . scaffold237 WUBlastX LTR_Gypsy-Cigr 200755 201321 135 + . . scaffold237 WUBlastX LTR_Gypsy-Cigr 200863 201483 105 + . . scaffold237 GLEAN mRNA 201607 202152 0.998715 + . ID=CGI_10021571; scaffold237 TRF Tandem_Repeat 204255 204279 50 + . . scaffold237 GLEAN mRNA 205440 216762 0.988255 - . ID=CGI_10021572; scaffold237 TRF Tandem_Repeat 206356 207401 1385 + . . scaffold237 TRF Tandem_Repeat 206356 207401 1289 + . . scaffold237 TRF Tandem_Repeat 210494 210770 518 + . . scaffold237 TRF Tandem_Repeat 210772 211366 994 + . . scaffold237 TRF Tandem_Repeat 210772 211934 1710 + . . scaffold237 TRF Tandem_Repeat 211365 211934 802 + . . scaffold237 TRF Tandem_Repeat 214141 214467 494 + . . scaffold237 GLEAN promoter 216763 217762 0.988255 - . ID=CGI_10021572; scaffold237 GLEAN mRNA 217167 217793 0.586917 - . ID=CGI_10021573; scaffold237 GLEAN promoter 217794 218793 0.586917 - . ID=CGI_10021573; scaffold237 TRF Tandem_Repeat 219496 219547 104 + . . scaffold237 GLEAN promoter 220874 221873 0.776496 + . ID=CGI_10021574; scaffold237 GLEAN mRNA 221874 256381 0.776496 + . ID=CGI_10021574; scaffold237 TRF Tandem_Repeat 222411 223461 1029 + . . scaffold237 TRF Tandem_Repeat 224480 225404 1129 + . . scaffold237 TRF Tandem_Repeat 226326 227249 1695 + . . scaffold237 TRF Tandem_Repeat 227729 227841 113 + . . scaffold237 TRF Tandem_Repeat 229892 230649 972 + . . scaffold237 TRF Tandem_Repeat 233470 233811 517 + . . scaffold237 TRF Tandem_Repeat 234176 234498 341 + . . scaffold237 TRF Tandem_Repeat 234176 234497 300 + . . scaffold237 TRF Tandem_Repeat 237752 237855 163 + . . scaffold237 TRF Tandem_Repeat 238549 238984 662 + . . scaffold237 TRF Tandem_Repeat 245197 245343 159 + . . scaffold237 TRF Tandem_Repeat 245197 245343 177 + . . scaffold237 TRF Tandem_Repeat 245540 245646 111 + . . scaffold237 WUBlastX DNA_Zator 246181 246354 48 + . . scaffold237 WUBlastX DNA_Zator 246617 246670 29 + . . scaffold237 GLEAN mRNA 247525 249582 0.998837 - . ID=CGI_10021575; scaffold237 GLEAN promoter 249583 250582 0.998837 - . ID=CGI_10021575; scaffold237 TRF Tandem_Repeat 249930 249979 55 + . . scaffold237 TRF Tandem_Repeat 250697 250811 94 + . . scaffold237 TRF Tandem_Repeat 250727 250947 180 + . . scaffold237 TRF Tandem_Repeat 250753 250917 77 + . . scaffold237 TRF Tandem_Repeat 250753 250917 65 + . . scaffold237 TRF Tandem_Repeat 253138 253175 76 + . . scaffold237 TRF Tandem_Repeat 253345 253392 96 + . . scaffold237 TRF Tandem_Repeat 254205 254401 193 + . . scaffold237 TRF Tandem_Repeat 254205 254317 65 + . . scaffold237 TRF Tandem_Repeat 254247 254432 182 + . . scaffold237 WUBlastX LINE_L1-Tx1 262561 263187 65 - . . scaffold237 TRF Tandem_Repeat 264103 264158 80 + . . scaffold237 TRF Tandem_Repeat 264204 265167 1210 + . . scaffold237 TRF Tandem_Repeat 268060 268086 54 + . . scaffold237 GLEAN mRNA 271641 273491 0.531613 - . ID=CGI_10021576; scaffold237 GLEAN promoter 273065 274064 0.584757 + . ID=CGI_10021577; scaffold237 GLEAN promoter 273492 274491 0.531613 - . ID=CGI_10021576; scaffold237 GLEAN mRNA 274065 288839 0.584757 + . ID=CGI_10021577; scaffold237 TRF Tandem_Repeat 282000 282484 818 + . . scaffold237 TRF Tandem_Repeat 284423 285961 1491 + . . scaffold237 TRF Tandem_Repeat 284423 285535 1336 + . . scaffold237 TRF Tandem_Repeat 285172 285244 71 + . . scaffold237 TRF Tandem_Repeat 285743 285961 261 + . . scaffold237 GLEAN mRNA 289842 291755 0.749027 - . ID=CGI_10021578; scaffold237 GLEAN promoter 291756 292755 0.749027 - . ID=CGI_10021578; scaffold237 WUBlastX LTR_Ngaro 294007 294204 38 - . . scaffold237 WUBlastX LTR_Ngaro 294425 294535 26 - . . scaffold237 WUBlastX LTR_Ngaro 294570 294848 41 - . . scaffold237 TRF Tandem_Repeat 296243 296481 372 + . . scaffold237 GLEAN mRNA 297187 297753 0.999855 - . ID=CGI_10021579; scaffold237 GLEAN promoter 297754 298753 0.999855 - . ID=CGI_10021579; scaffold237 GLEAN promoter 302820 303819 1 + . ID=CGI_10021580; scaffold237 TRF Tandem_Repeat 303002 303126 126 + . . scaffold237 TRF Tandem_Repeat 303179 303274 97 + . . scaffold237 TRF Tandem_Repeat 303752 303778 54 + . . scaffold237 GLEAN mRNA 303820 311812 1 + . ID=CGI_10021580; scaffold237 TRF Tandem_Repeat 306400 306598 398 + . . scaffold237 TRF Tandem_Repeat 308793 309015 437 + . . scaffold237 TRF Tandem_Repeat 309813 309921 155 + . . scaffold237 GLEAN promoter 314225 315224 0.999786 + . ID=CGI_10021581; scaffold237 GLEAN mRNA 315225 321061 0.999786 + . ID=CGI_10021581; scaffold237 WUBlastX LINE_RTE-X 319245 320036 185 - . . scaffold237 WUBlastX LINE_RTE-X 319359 320393 182 - . . scaffold237 WUBlastX LINE_RTE-X 320258 320656 102 + . . scaffold237 TRF Tandem_Repeat 320685 320744 57 + . . scaffold237 WUBlastX LINE_Penelope 325090 325746 27 - . . scaffold237 WUBlastX LINE_Penelope 325228 325740 194 - . . scaffold237 WUBlastX LINE_Penelope 325480 325806 62 - . . scaffold237 WUBlastX LTR_Pao 331241 331549 181 - . . scaffold237 WUBlastX LTR_Pao 332384 332494 23 - . . scaffold237 WUBlastX LTR_Pao 332420 332497 38 - . . scaffold237 TRF Tandem_Repeat 335865 335900 72 + . . scaffold237 WUBlastX DNA_Sola 342563 342703 90 - . . scaffold237 WUBlastX LTR_DIRS 344040 344351 118 - . . scaffold237 WUBlastX LTR_DIRS 344303 344860 173 - . . scaffold237 WUBlastX LTR_DIRS 344931 345293 59 - . . scaffold237 WUBlastX LTR_DIRS 344931 345047 66 - . . scaffold237 WUBlastX DNA_Maverick 350186 350917 173 - . . scaffold237 WUBlastX DNA_Maverick 350467 351903 503 - . . scaffold237 WUBlastX DNA_Maverick 352167 352520 163 - . . scaffold237 WUBlastX DNA_Maverick 352433 352573 84 - . . scaffold237 WUBlastX DNA_Maverick 352555 352824 79 - . . scaffold237 WUBlastX DNA_Maverick 353093 353374 44 - . . scaffold237 WUBlastX DNA_Maverick 353851 354366 107 - . . scaffold237 TRF Tandem_Repeat 355699 356670 1223 + . . scaffold237 GLEAN promoter 359058 360057 0.784002 + . ID=CGI_10021582; scaffold237 GLEAN mRNA 360058 366720 0.784002 + . ID=CGI_10021582; scaffold237 TRF Tandem_Repeat 360938 360964 54 + . . scaffold237 GLEAN promoter 367868 368867 0.659254 + . ID=CGI_10021583; scaffold237 GLEAN mRNA 368868 369050 0.659254 + . ID=CGI_10021583; scaffold237 WUBlastX DNA_Kolobok 373550 373768 22 + . . scaffold237 WUBlastX DNA_Kolobok 373589 373792 114 + . . scaffold237 WUBlastX DNA_Kolobok 373888 374142 95 + . . scaffold237 WUBlastX DNA_Kolobok 373888 374190 77 + . . scaffold237 WUBlastX DNA_Kolobok 374339 374458 41 + . . scaffold237 WUBlastX DNA_Kolobok 374588 374746 44 + . . scaffold237 WUBlastX DNA_Kolobok 374594 374722 46 + . . scaffold237 TRF Tandem_Repeat 394534 394582 98 + . . scaffold237 TRF Tandem_Repeat 402013 402057 90 + . . scaffold237 TRF Tandem_Repeat 413848 413893 83 + . . scaffold237 TRF Tandem_Repeat 414753 414797 56 + . . scaffold237 TRF Tandem_Repeat 414866 415083 116 + . . scaffold237 TRF Tandem_Repeat 414878 415017 176 + . . scaffold237 TRF Tandem_Repeat 414886 415111 242 + . . scaffold237 TRF Tandem_Repeat 414911 415111 158 + . . scaffold237 TRF Tandem_Repeat 414999 415103 133 + . . scaffold237 TRF Tandem_Repeat 415010 415119 105 + . . scaffold237 TRF Tandem_Repeat 415939 416003 53 + . . scaffold237 GLEAN mRNA 417116 431972 0.926924 - . ID=CGI_10021584; scaffold237 GLEAN promoter 431973 432972 0.926924 - . ID=CGI_10021584; scaffold237 GLEAN mRNA 433087 437030 0.949422 - . ID=CGI_10021585; scaffold237 GLEAN promoter 437031 438030 0.949422 - . ID=CGI_10021585; scaffold237 TRF Tandem_Repeat 437733 437784 104 + . . scaffold237 WUBlastX LINE_L1-Tx1 440065 441258 204 + . . scaffold237 WUBlastX DNA_IS4EU 446990 447109 33 - . . scaffold237 WUBlastX DNA_Harbinger 466158 466568 151 + . . scaffold237 WUBlastX DNA_Harbinger 467745 467984 111 - . . scaffold237 WUBlastX DNA_Harbinger 467805 468080 159 - . . scaffold237 WUBlastX DNA_Harbinger 468937 469023 40 - . . scaffold237 WUBlastX DNA_Harbinger 469637 469981 134 - . . scaffold237 WUBlastX DNA_Harbinger 469700 469978 196 - . . scaffold237 WUBlastX DNA_Harbinger 470174 470320 94 - . . scaffold237 WUBlastX DNA_TcMar-Tc1 474597 475547 504 - . . scaffold237 TRF Tandem_Repeat 475652 475702 84 + . . scaffold237 TRF Tandem_Repeat 475713 476551 1177 + . . scaffold237 TRF Tandem_Repeat 533951 534112 113 + . . scaffold237 TRF Tandem_Repeat 543625 543673 62 + . . scaffold237 WUBlastX LTR_ERV1 545320 545703 90 + . . scaffold237 WUBlastX LTR_ERV1 545392 545703 102 + . . scaffold237 WUBlastX LTR_Gypsy 545446 545691 119 + . . scaffold237 TRF Tandem_Repeat 551745 551907 193 + . . scaffold237 TRF Tandem_Repeat 552121 552214 109 + . . scaffold237 GLEAN mRNA 559273 566384 0.971216 - . ID=CGI_10021586; scaffold237 TRF Tandem_Repeat 564158 564269 82 + . . scaffold237 GLEAN promoter 566385 567384 0.971216 - . ID=CGI_10021586; scaffold237 TRF Tandem_Repeat 567802 568178 343 + . . scaffold237 TRF Tandem_Repeat 567802 568498 194 + . . scaffold237 TRF Tandem_Repeat 568295 568492 218 + . . scaffold237 TRF Tandem_Repeat 572674 572718 90 + . . scaffold237 WUBlastX LTR_Gypsy 576554 576709 40 - . . scaffold237 WUBlastX LINE_L1 588777 589538 26 + . . scaffold237 WUBlastX LINE_L2 589047 589658 122 + . . scaffold237 GLEAN promoter 589107 590106 0.776648 + . ID=CGI_10021587; scaffold237 WUBlastX LINE_L1 589655 589723 32 + . . scaffold237 WUBlastX LINE_R2 589719 589853 20 + . . scaffold237 GLEAN mRNA 590107 590598 0.776648 + . ID=CGI_10021587; scaffold237 WUBlastX LINE_RTE-RTE 590227 590355 22 + . . scaffold237 WUBlastX LINE_R2 590432 590509 25 + . . scaffold237 WUBlastX LINE_RTE-X 590598 590990 202 + . . scaffold237 WUBlastX LINE_RTE-X 590658 591050 192 + . . scaffold237 WUBlastX LINE_L2 591397 591603 29 + . . scaffold237 WUBlastX LINE_L2 591433 591597 46 + . . scaffold237 WUBlastX LINE_RTE-X 591463 591603 65 + . . scaffold237 WUBlastX LINE_RTE-X 591484 591669 53 + . . scaffold237 TRF Tandem_Repeat 595689 595730 68 + . . scaffold237 TRF Tandem_Repeat 602109 602180 90 + . . scaffold237 WUBlastX DNA_MuDR 605976 607616 527 - . . scaffold237 GLEAN promoter 611260 612259 0.98889 + . ID=CGI_10021588; scaffold237 GLEAN mRNA 612260 618942 0.98889 + . ID=CGI_10021588; scaffold237 TRF Tandem_Repeat 616919 617571 968 + . . scaffold237 TRF Tandem_Repeat 619076 619292 319 + . . scaffold237 TRF Tandem_Repeat 623432 623464 66 + . . scaffold237 TRF Tandem_Repeat 627486 627526 82 + . . scaffold237 TRF Tandem_Repeat 627598 627703 108 + . . scaffold237 TRF Tandem_Repeat 632066 632105 53 + . . scaffold237 TRF Tandem_Repeat 638457 638680 261 + . . scaffold237 GLEAN promoter 638704 639703 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 638823 638923 141 + . . scaffold237 GLEAN mRNA 639704 660816 0.612426 + . ID=CGI_10021589; scaffold237 TRF Tandem_Repeat 643013 643069 114 + . . scaffold237 TRF Tandem_Repeat 646142 646625 346 + . . scaffold237 TRF Tandem_Repeat 646153 646625 409 + . . scaffold237 TRF Tandem_Repeat 647180 648300 2143 + . . scaffold237 TRF Tandem_Repeat 649399 649432 68 + . . scaffold237 TRF Tandem_Repeat 650149 650183 70 + . . scaffold237 TRF Tandem_Repeat 650387 650575 360 + . . scaffold237 TRF Tandem_Repeat 652379 652492 72 + . . scaffold237 TRF Tandem_Repeat 652439 652492 90 + . . scaffold237 GLEAN promoter 660741 661740 0.991699 + . ID=CGI_10021590; scaffold237 GLEAN mRNA 661741 674827 0.991699 + . ID=CGI_10021590; scaffold237 TRF Tandem_Repeat 666254 666657 628 + . . scaffold237 WUBlastX LINE_L1-Tx1 702553 703179 105 - . . scaffold237 WUBlastX LINE_L1-Tx1 703289 703381 30 - . . scaffold24 WUBlastX LINE_L2 107 505 23 - . . scaffold240 WUBlastX LTR_Gypsy 3497 4414 108 + . . scaffold240 WUBlastX LTR_Gypsy 3683 4276 111 + . . scaffold240 WUBlastX LTR_Gypsy 4600 5451 254 + . . scaffold240 TRF Tandem_Repeat 11362 11388 54 + . . scaffold240 WUBlastX LINE_L1-Tx1 25826 26095 42 - . . scaffold240 WUBlastX LINE_L1 25874 26104 67 - . . scaffold240 WUBlastX LINE_L1 26739 26897 31 - . . scaffold240 WUBlastX LINE_L1 26873 27088 46 - . . scaffold240 WUBlastX LINE_L1 26894 27058 47 - . . scaffold240 GLEAN promoter 27917 28916 0.967394 + . ID=CGI_10007841; scaffold240 WUBlastX LINE_RTE-X 28326 28721 78 + . . scaffold240 WUBlastX LINE_RTE-X 28347 28637 85 + . . scaffold240 TRF Tandem_Repeat 28874 28899 52 + . . scaffold240 GLEAN mRNA 28917 35549 0.967394 + . ID=CGI_10007841; scaffold240 WUBlastX LTR_Gypsy 38709 38921 160 - . . scaffold240 WUBlastX LTR_Gypsy 38948 39079 75 - . . scaffold240 WUBlastX LTR_Gypsy 59793 60506 25 - . . scaffold240 WUBlastX DNA_Maverick 59808 60401 391 - . . scaffold240 GLEAN mRNA 60887 61291 0.618241 - . ID=CGI_10007842; scaffold240 GLEAN promoter 61292 62291 0.618241 - . ID=CGI_10007842; scaffold240 GLEAN mRNA 61382 61759 0.980749 - . ID=CGI_10007843; scaffold240 GLEAN promoter 61760 62759 0.980749 - . ID=CGI_10007843; scaffold240 GLEAN mRNA 63755 67840 1 - . ID=CGI_10007844; scaffold240 GLEAN promoter 67841 68840 1 - . ID=CGI_10007844; scaffold240 GLEAN mRNA 67869 68699 1 - . ID=CGI_10007845; scaffold240 GLEAN promoter 68700 69699 1 - . ID=CGI_10007845; scaffold240 WUBlastX LTR_Pao 69574 74688 3981 - . . scaffold240 TRF Tandem_Repeat 74705 74972 326 + . . scaffold240 TRF Tandem_Repeat 74705 75027 234 + . . scaffold240 WUBlastX LTR_Pao 75100 75366 58 - . . scaffold240 WUBlastX DNA_En-Spm 76804 77256 66 - . . scaffold240 WUBlastX DNA_En-Spm 76807 77070 67 - . . scaffold240 WUBlastX LINE_L1-Tx1 80816 81325 87 - . . scaffold240 WUBlastX LINE_L1-Tx1 80900 81283 166 - . . scaffold240 TRF Tandem_Repeat 107681 107906 320 + . . scaffold240 TRF Tandem_Repeat 108891 109024 93 + . . scaffold240 TRF Tandem_Repeat 108901 108976 62 + . . scaffold240 TRF Tandem_Repeat 108912 108988 76 + . . scaffold240 TRF Tandem_Repeat 115744 115798 58 + . . scaffold240 WUBlastX DNA_Maverick 120209 120304 20 - . . scaffold240 WUBlastX DNA_Maverick 120233 120304 23 - . . scaffold240 WUBlastX DNA_Maverick 120449 120826 238 - . . scaffold240 WUBlastX DNA_Maverick 120877 120954 21 - . . scaffold240 WUBlastX DNA_Maverick 120904 121062 103 - . . scaffold240 TRF Tandem_Repeat 123993 124058 53 + . . scaffold240 WUBlastX LTR_Gypsy 124422 125213 91 - . . scaffold240 WUBlastX LTR_Gypsy 124572 125213 107 - . . scaffold240 WUBlastX LTR_Gypsy 124761 125201 156 - . . scaffold240 WUBlastX LTR_Gypsy 125201 125794 535 - . . scaffold240 WUBlastX LTR_Gypsy-Cigr 125204 125965 513 - . . scaffold240 WUBlastX LTR_Gypsy 125772 126770 213 - . . scaffold240 WUBlastX LTR_Gypsy 126588 126932 82 - . . scaffold240 WUBlastX LTR_Gypsy 126998 127708 106 - . . scaffold240 WUBlastX LTR_Gypsy-Cigr 127265 127852 90 - . . scaffold240 TRF Tandem_Repeat 130495 130542 96 + . . scaffold240 TRF Tandem_Repeat 137054 137225 166 + . . scaffold240 TRF Tandem_Repeat 145285 145325 82 + . . scaffold240 GLEAN promoter 146105 147104 0.599537 + . ID=CGI_10007847; scaffold240 GLEAN mRNA 147105 148523 0.599537 + . ID=CGI_10007847; scaffold240 GLEAN promoter 152291 153290 0.99796 + . ID=CGI_10007848; scaffold240 TRF Tandem_Repeat 152884 153203 500 + . . scaffold240 GLEAN mRNA 153291 154540 0.99796 + . ID=CGI_10007848; scaffold240 GLEAN mRNA 156534 157210 0.999304 - . ID=CGI_10007849; scaffold240 GLEAN promoter 157211 158210 0.999304 - . ID=CGI_10007849; scaffold240 GLEAN mRNA 157462 167089 0.999253 - . ID=CGI_10007850; scaffold240 WUBlastX LINE_CR1-L2 159931 160113 65 - . . scaffold240 TRF Tandem_Repeat 164141 164188 51 + . . scaffold240 TRF Tandem_Repeat 164141 164185 72 + . . scaffold240 GLEAN promoter 167090 168089 0.999253 - . ID=CGI_10007850; scaffold240 GLEAN promoter 168762 169761 1 + . ID=CGI_10007851; scaffold240 GLEAN mRNA 169762 171676 1 + . ID=CGI_10007851; scaffold240 WUBlastX LINE_Penelope 170609 170725 28 + . . scaffold240 WUBlastX LINE_Penelope 170639 170818 58 + . . scaffold240 WUBlastX LINE_Penelope 170763 171167 106 + . . scaffold240 TRF Tandem_Repeat 176031 176227 182 + . . scaffold240 TRF Tandem_Repeat 176285 176387 144 + . . scaffold240 TRF Tandem_Repeat 178856 179950 723 + . . scaffold240 TRF Tandem_Repeat 184397 184453 114 + . . scaffold240 TRF Tandem_Repeat 188214 188293 160 + . . scaffold240 GLEAN mRNA 190117 192316 0.993776 - . ID=CGI_10007853; scaffold240 GLEAN promoter 192317 193274 0.993776 - . ID=CGI_10007853; scaffold24028 GLEAN mRNA 2485 3006 1 - . ID=CGI_10000227; scaffold24028 GLEAN promoter 3007 3079 1 - . ID=CGI_10000227; scaffold24070 WUBlastX LTR_DIRS 1777 1920 87 - . . scaffold24070 WUBlastX LTR_DIRS 2118 2192 25 - . . scaffold241 GLEAN promoter 13170 14169 0.325403 + . ID=CGI_10025082; scaffold241 TRF Tandem_Repeat 13354 13401 78 + . . scaffold241 GLEAN mRNA 14170 22719 0.325403 + . ID=CGI_10025082; scaffold241 GLEAN mRNA 14204 14638 0.984964 - . ID=CGI_10025083; scaffold241 GLEAN promoter 14639 15638 0.984964 - . ID=CGI_10025083; scaffold241 GLEAN mRNA 15158 16718 0.998265 - . ID=CGI_10025084; scaffold241 GLEAN promoter 16719 17718 0.998265 - . ID=CGI_10025084; scaffold241 TRF Tandem_Repeat 20313 20411 81 + . . scaffold241 GLEAN mRNA 21889 22347 0.996819 - . ID=CGI_10025085; scaffold241 GLEAN promoter 22348 23347 0.996819 - . ID=CGI_10025085; scaffold241 GLEAN mRNA 22435 22884 0.984344 - . ID=CGI_10025086; scaffold241 GLEAN promoter 22885 23884 0.984344 - . ID=CGI_10025086; scaffold241 GLEAN mRNA 23199 23555 0.992954 - . ID=CGI_10025087; scaffold241 GLEAN promoter 23556 24555 0.992954 - . ID=CGI_10025087; scaffold241 GLEAN mRNA 23855 24112 0.746794 - . ID=CGI_10025088; scaffold241 GLEAN promoter 24113 25112 0.746794 - . ID=CGI_10025088; scaffold241 GLEAN promoter 36736 37735 0.9976 + . ID=CGI_10025089; scaffold241 GLEAN mRNA 37736 52734 0.9976 + . ID=CGI_10025089; scaffold241 TRF Tandem_Repeat 51022 51065 65 + . . scaffold241 GLEAN promoter 56268 57267 0.9966 + . ID=CGI_10025090; scaffold241 GLEAN mRNA 57268 78429 0.9966 + . ID=CGI_10025090; scaffold241 WUBlastX LTR_DIRS 62770 63066 172 - . . scaffold241 WUBlastX LTR_DIRS 63030 63407 181 - . . scaffold241 WUBlastX LTR_DIRS 63402 63584 136 - . . scaffold241 WUBlastX LTR_DIRS 63742 63855 58 - . . scaffold241 WUBlastX LTR_DIRS 63855 64793 455 - . . scaffold241 WUBlastX LTR_DIRS 64770 64916 39 - . . scaffold241 WUBlastX LTR_DIRS 64913 65188 139 - . . scaffold241 WUBlastX LTR_DIRS 64967 65230 28 - . . scaffold241 WUBlastX LTR_DIRS 65337 65849 189 - . . scaffold241 TRF Tandem_Repeat 76018 76099 148 + . . scaffold241 GLEAN promoter 80964 81963 0.534439 + . ID=CGI_10025091; scaffold241 GLEAN mRNA 81964 102317 0.534439 + . ID=CGI_10025091; scaffold241 WUBlastX LTR_Pao 82338 83054 228 + . . scaffold241 WUBlastX LTR_Pao 82470 83048 321 + . . scaffold241 WUBlastX LTR_Pao 82533 83162 309 + . . scaffold241 WUBlastX LTR_Pao 83174 83869 256 + . . scaffold241 WUBlastX LTR_Pao 83866 84141 194 + . . scaffold241 WUBlastX LTR_Pao 84135 84611 321 + . . scaffold241 WUBlastX LTR_Pao 84611 84973 290 + . . scaffold241 WUBlastX LTR_Pao 84952 86841 634 + . . scaffold241 TRF Tandem_Repeat 99113 99156 88 + . . scaffold241 GLEAN promoter 107603 108602 0.55536 + . ID=CGI_10025092; scaffold241 GLEAN mRNA 108603 137659 0.55536 + . ID=CGI_10025092; scaffold241 TRF Tandem_Repeat 111314 111343 60 + . . scaffold241 WUBlastX LINE_L1-Tx1 124731 125060 44 - . . scaffold241 WUBlastX LINE_L1 124806 125078 46 - . . scaffold241 WUBlastX LINE_L1 124830 125000 62 - . . scaffold241 WUBlastX LINE_L1-Tx1 125084 125791 59 - . . scaffold241 WUBlastX LINE_L1 125817 126035 53 - . . scaffold241 WUBlastX LINE_L1-Tx1 126079 127176 92 - . . scaffold241 TRF Tandem_Repeat 135435 135482 78 + . . scaffold241 TRF Tandem_Repeat 144472 144500 58 + . . scaffold241 TRF Tandem_Repeat 160529 160566 76 + . . scaffold241 TRF Tandem_Repeat 160566 160596 62 + . . scaffold241 TRF Tandem_Repeat 160951 160981 53 + . . scaffold241 WUBlastX LTR_DIRS 162079 162540 130 + . . scaffold241 WUBlastX LINE_RTE-X 162846 163613 101 - . . scaffold241 WUBlastX LINE_RTE-X 162975 164543 618 - . . scaffold241 WUBlastX LINE_RTE-X 164561 166261 332 - . . scaffold241 WUBlastX LINE_CR1 165803 166387 22 - . . scaffold241 WUBlastX LINE_L1 166376 167059 248 - . . scaffold241 WUBlastX LINE_L1 166448 167176 57 - . . scaffold241 GLEAN promoter 170572 171571 0.702385 + . ID=CGI_10025093; scaffold241 GLEAN mRNA 171572 186739 0.702385 + . ID=CGI_10025093; scaffold241 TRF Tandem_Repeat 178341 178625 276 + . . scaffold241 TRF Tandem_Repeat 178441 178655 128 + . . scaffold241 TRF Tandem_Repeat 178497 178656 212 + . . scaffold241 TRF Tandem_Repeat 182291 182321 53 + . . scaffold241 GLEAN mRNA 187466 192635 1 - . ID=CGI_10025094; scaffold241 GLEAN promoter 192636 193635 1 - . ID=CGI_10025094; scaffold241 GLEAN mRNA 194636 211540 1 - . ID=CGI_10025095; scaffold241 TRF Tandem_Repeat 195547 197082 2079 + . . scaffold241 TRF Tandem_Repeat 206511 207370 839 + . . scaffold241 TRF Tandem_Repeat 206517 207370 848 + . . scaffold241 TRF Tandem_Repeat 207854 208107 311 + . . scaffold241 TRF Tandem_Repeat 210825 210861 74 + . . scaffold241 GLEAN promoter 211541 212540 1 - . ID=CGI_10025095; scaffold241 GLEAN promoter 212680 213679 1 + . ID=CGI_10025096; scaffold241 GLEAN mRNA 213680 214488 1 + . ID=CGI_10025096; scaffold241 TRF Tandem_Repeat 213778 213812 70 + . . scaffold241 TRF Tandem_Repeat 213919 213955 65 + . . scaffold241 GLEAN mRNA 217200 258623 0.493032 - . ID=CGI_10025097; scaffold241 TRF Tandem_Repeat 226477 226597 199 + . . scaffold241 TRF Tandem_Repeat 227972 228792 1036 + . . scaffold241 TRF Tandem_Repeat 230238 230299 81 + . . scaffold241 TRF Tandem_Repeat 231896 231975 51 + . . scaffold241 TRF Tandem_Repeat 231910 231966 57 + . . scaffold241 GLEAN promoter 258624 259623 0.493032 - . ID=CGI_10025097; scaffold241 TRF Tandem_Repeat 259958 260007 91 + . . scaffold241 TRF Tandem_Repeat 261911 262182 167 + . . scaffold241 TRF Tandem_Repeat 261979 262182 121 + . . scaffold241 TRF Tandem_Repeat 262131 262186 67 + . . scaffold241 WUBlastX DNA_Kolobok-IS4 264874 265089 25 + . . scaffold241 WUBlastX DNA_IS4EU 264985 265146 39 + . . scaffold241 WUBlastX DNA_IS4EU 265244 265525 76 + . . scaffold241 WUBlastX DNA_IS4EU 265250 265477 94 + . . scaffold241 GLEAN mRNA 268452 276327 0.999233 - . ID=CGI_10025099; scaffold241 GLEAN promoter 276328 277327 0.999233 - . ID=CGI_10025099; scaffold241 TRF Tandem_Repeat 279659 279769 66 + . . scaffold241 TRF Tandem_Repeat 281344 281397 63 + . . scaffold241 WUBlastX LTR_Gypsy 282519 282944 250 + . . scaffold241 WUBlastX LTR_Gypsy 282950 284554 769 + . . scaffold241 WUBlastX LTR_Gypsy 283859 284686 256 + . . scaffold241 WUBlastX LTR_Gypsy 285098 286999 1207 + . . scaffold241 GLEAN mRNA 288013 288459 0.999802 - . ID=CGI_10025101; scaffold241 WUBlastX DNA_TcMar-Tc2 288022 288378 76 - . . scaffold241 WUBlastX DNA_TcMar-Fot1 288181 288507 76 - . . scaffold241 WUBlastX DNA_TcMar-Fot1 288205 288576 52 - . . scaffold241 GLEAN promoter 288460 289459 0.999802 - . ID=CGI_10025101; scaffold241 TRF Tandem_Repeat 291980 292207 332 + . . scaffold241 TRF Tandem_Repeat 291980 292207 276 + . . scaffold241 TRF Tandem_Repeat 292647 292702 105 + . . scaffold241 WUBlastX LTR_Ngaro 299334 299507 73 - . . scaffold241 WUBlastX LTR_Ngaro 299337 299477 132 - . . scaffold241 WUBlastX LTR_Ngaro 299522 299608 45 - . . scaffold241 TRF Tandem_Repeat 302744 302835 141 + . . scaffold241 WUBlastX LTR_Pao 342075 342878 125 + . . scaffold241 WUBlastX LTR_Pao 342267 342878 165 + . . scaffold241 WUBlastX LTR_Pao 342432 342878 166 + . . scaffold241 WUBlastX LTR_Pao 342564 342878 168 + . . scaffold241 TRF Tandem_Repeat 355327 355375 98 + . . scaffold241 TRF Tandem_Repeat 366449 366501 88 + . . scaffold241 TRF Tandem_Repeat 366452 366507 58 + . . scaffold241 GLEAN mRNA 380326 398675 0.495388 - . ID=CGI_10025102; scaffold241 WUBlastX DNA_NOF 391957 392625 91 - . . scaffold241 WUBlastX DNA_NOF 392152 392511 119 - . . scaffold241 WUBlastX DNA_MuDR 393567 393746 107 - . . scaffold241 WUBlastX DNA_NOF 393582 393728 107 - . . scaffold241 WUBlastX DNA_NOF 394008 394316 266 - . . scaffold241 WUBlastX DNA_NOF 394664 394849 49 - . . scaffold241 TRF Tandem_Repeat 395940 397461 1715 + . . scaffold241 TRF Tandem_Repeat 395940 397546 1718 + . . scaffold241 TRF Tandem_Repeat 395978 397461 947 + . . scaffold241 TRF Tandem_Repeat 396053 397461 626 + . . scaffold241 GLEAN promoter 398676 399675 0.495388 - . ID=CGI_10025102; scaffold241 GLEAN promoter 420146 421145 1 + . ID=CGI_10025103; scaffold241 GLEAN mRNA 421146 431650 1 + . ID=CGI_10025103; scaffold241 GLEAN mRNA 423800 426726 0.999229 - . ID=CGI_10025104; scaffold241 GLEAN promoter 426727 427726 0.999229 - . ID=CGI_10025104; scaffold241 GLEAN mRNA 431864 441256 0.998339 - . ID=CGI_10025105; scaffold241 GLEAN promoter 441257 442256 0.998339 - . ID=CGI_10025105; scaffold241 GLEAN mRNA 442799 444870 0.905403 - . ID=CGI_10025106; scaffold241 GLEAN promoter 444871 445870 0.905403 - . ID=CGI_10025106; scaffold241 TRF Tandem_Repeat 445451 445496 92 + . . scaffold241 WUBlastX LINE_RTE-X 448018 448314 26 + . . scaffold241 WUBlastX LINE_RTE-X 448141 448302 57 + . . scaffold241 WUBlastX LINE_RTE-X 448207 448323 64 + . . scaffold241 WUBlastX LINE_RTE-X 448304 449314 438 + . . scaffold241 GLEAN promoter 450063 451062 1 + . ID=CGI_10025107; scaffold241 GLEAN mRNA 451063 461624 1 + . ID=CGI_10025107; scaffold241 GLEAN mRNA 463120 474244 0.6834 - . ID=CGI_10025108; scaffold241 GLEAN promoter 474245 475244 0.6834 - . ID=CGI_10025108; scaffold241 WUBlastX LINE_RTE-RTE 476083 477024 60 + . . scaffold241 WUBlastX LINE_RTE-BovB 476242 479163 2053 + . . scaffold241 TRF Tandem_Repeat 483538 483590 106 + . . scaffold241 GLEAN promoter 486247 487246 0.999879 + . ID=CGI_10025109; scaffold241 GLEAN mRNA 487247 499938 0.999879 + . ID=CGI_10025109; scaffold241 GLEAN promoter 499255 500254 0.472203 + . ID=CGI_10025110; scaffold241 GLEAN mRNA 500255 505817 0.472203 + . ID=CGI_10025110; scaffold241 GLEAN promoter 512219 513218 0.999998 + . ID=CGI_10025111; scaffold241 GLEAN mRNA 513219 515834 0.999998 + . ID=CGI_10025111; scaffold241 TRF Tandem_Repeat 513492 513650 122 + . . scaffold241 TRF Tandem_Repeat 513553 513665 93 + . . scaffold241 WUBlastX LTR_DIRS 518426 518731 22 - . . scaffold241 WUBlastX LTR_Gypsy 518498 518923 281 - . . scaffold241 WUBlastX LTR_Gypsy 518932 520278 146 - . . scaffold241 WUBlastX LTR_Gypsy-Cigr 518935 519654 466 - . . scaffold241 WUBlastX LTR_Gypsy 520299 520475 32 - . . scaffold241 WUBlastX LTR_Gypsy-Cigr 520305 520547 30 - . . scaffold241 WUBlastX DNA_Sola 521495 521749 124 - . . scaffold241 WUBlastX DNA_Sola 521516 521833 66 - . . scaffold241 WUBlastX DNA_Sola 523174 523572 187 - . . scaffold241 WUBlastX DNA_Sola 523526 523684 72 - . . scaffold241 WUBlastX DNA_Sola 523683 524330 110 - . . scaffold241 WUBlastX DNA_Sola 523815 524303 137 - . . scaffold241 WUBlastX DNA_Sola 524001 524468 95 - . . scaffold241 WUBlastX DNA_Sola 524025 524681 81 - . . scaffold241 WUBlastX DNA_IS4EU 526218 527750 730 + . . scaffold241 WUBlastX DNA_IS4EU 528184 529104 159 - . . scaffold241 WUBlastX DNA_IS4EU 528442 529104 218 - . . scaffold241 WUBlastX DNA_IS4EU 529380 529511 51 - . . scaffold241 WUBlastX DNA_IS4EU 529858 530148 35 - . . scaffold241 WUBlastX DNA_IS4EU 530050 530148 36 - . . scaffold241 WUBlastX DNA_IS4EU 530737 531303 243 - . . scaffold241 TRF Tandem_Repeat 533205 533310 185 + . . scaffold241 TRF Tandem_Repeat 533208 533324 72 + . . scaffold241 TRF Tandem_Repeat 533276 533366 59 + . . scaffold241 TRF Tandem_Repeat 533322 533366 53 + . . scaffold241 TRF Tandem_Repeat 535135 535811 216 + . . scaffold241 TRF Tandem_Repeat 535178 535811 337 + . . scaffold241 TRF Tandem_Repeat 535312 535409 61 + . . scaffold241 TRF Tandem_Repeat 535609 535652 61 + . . scaffold241 TRF Tandem_Repeat 535657 535748 75 + . . scaffold241 GLEAN mRNA 535917 536237 0.430117 - . ID=CGI_10025112; scaffold241 GLEAN promoter 536238 537237 0.430117 - . ID=CGI_10025112; scaffold241 GLEAN mRNA 546569 573171 1 - . ID=CGI_10025113; scaffold241 TRF Tandem_Repeat 554228 554364 223 + . . scaffold241 TRF Tandem_Repeat 557065 557297 385 + . . scaffold241 TRF Tandem_Repeat 558740 558779 80 + . . scaffold241 TRF Tandem_Repeat 570712 571005 516 + . . scaffold241 TRF Tandem_Repeat 571628 571896 346 + . . scaffold241 TRF Tandem_Repeat 571628 571896 270 + . . scaffold241 GLEAN promoter 573172 574171 1 - . ID=CGI_10025113; scaffold241 TRF Tandem_Repeat 575987 576030 88 + . . scaffold241 TRF Tandem_Repeat 579552 579614 117 + . . scaffold241 GLEAN mRNA 584665 614477 0.99935 - . ID=CGI_10025114; scaffold241 TRF Tandem_Repeat 588547 588584 76 + . . scaffold241 TRF Tandem_Repeat 591437 591975 228 + . . scaffold241 TRF Tandem_Repeat 591498 591979 340 + . . scaffold241 TRF Tandem_Repeat 601558 601595 76 + . . scaffold241 TRF Tandem_Repeat 611745 611790 92 + . . scaffold241 GLEAN promoter 614478 615477 0.99935 - . ID=CGI_10025114; scaffold241 TRF Tandem_Repeat 640313 640345 66 + . . scaffold241 TRF Tandem_Repeat 640343 640375 57 + . . scaffold241 TRF Tandem_Repeat 648456 648480 50 + . . scaffold241 TRF Tandem_Repeat 654489 654605 118 + . . scaffold241 GLEAN promoter 655295 656294 1 + . ID=CGI_10025115; scaffold241 GLEAN mRNA 656295 661296 1 + . ID=CGI_10025115; scaffold241 TRF Tandem_Repeat 668225 668262 58 + . . scaffold241 TRF Tandem_Repeat 669955 669994 80 + . . scaffold241 GLEAN promoter 671868 672867 0.998968 + . ID=CGI_10025116; scaffold241 GLEAN mRNA 672868 695391 0.998968 + . ID=CGI_10025116; scaffold241 TRF Tandem_Repeat 676136 676263 141 + . . scaffold241 TRF Tandem_Repeat 679718 679875 226 + . . scaffold241 TRF Tandem_Repeat 682499 682629 262 + . . scaffold241 TRF Tandem_Repeat 683272 683340 58 + . . scaffold241 TRF Tandem_Repeat 694589 694624 72 + . . scaffold241 GLEAN promoter 702474 703473 0.618463 + . ID=CGI_10025117; scaffold241 GLEAN mRNA 703474 730345 0.618463 + . ID=CGI_10025117; scaffold241 TRF Tandem_Repeat 703744 703792 98 + . . scaffold241 TRF Tandem_Repeat 716695 716720 52 + . . scaffold241 GLEAN promoter 731504 732503 0.962589 + . ID=CGI_10025118; scaffold241 GLEAN mRNA 732504 738153 0.962589 + . ID=CGI_10025118; scaffold241 GLEAN mRNA 733377 734612 0.999998 - . ID=CGI_10025119; scaffold241 GLEAN promoter 734613 735612 0.999998 - . ID=CGI_10025119; scaffold241 GLEAN promoter 741013 742012 0.999885 + . ID=CGI_10025120; scaffold241 GLEAN mRNA 742013 742399 0.999885 + . ID=CGI_10025120; scaffold241 TRF Tandem_Repeat 743754 743788 70 + . . scaffold241 GLEAN promoter 753937 754936 0.999661 + . ID=CGI_10025121; scaffold241 GLEAN mRNA 754937 756413 0.999661 + . ID=CGI_10025121; scaffold241 TRF Tandem_Repeat 758298 758350 106 + . . scaffold241 WUBlastX LINE_RTE-X 759644 760363 101 - . . scaffold241 WUBlastX LINE_RTE-X 759764 760363 131 - . . scaffold241 WUBlastX LINE_RTE-X 760344 760748 189 - . . scaffold241 WUBlastX LINE_RTE-X 760727 760906 53 - . . scaffold241 WUBlastX LINE_Proto2 760736 760945 22 - . . scaffold241 GLEAN promoter 762516 763515 0.999375 + . ID=CGI_10025122; scaffold241 GLEAN mRNA 763516 764721 0.999375 + . ID=CGI_10025122; scaffold241 TRF Tandem_Repeat 765552 765611 66 + . . scaffold241 TRF Tandem_Repeat 765553 765618 96 + . . scaffold241 TRF Tandem_Repeat 765557 765618 106 + . . scaffold241 TRF Tandem_Repeat 765561 765618 62 + . . scaffold241 WUBlastX DNA_TcMar-Tc1 773397 773597 46 + . . scaffold241 WUBlastX DNA_TcMar-Tc1 773648 773929 139 + . . scaffold241 GLEAN promoter 773858 774857 0.861586 + . ID=CGI_10025123; scaffold241 WUBlastX DNA_TcMar-Tc1 773923 774363 255 + . . scaffold241 GLEAN mRNA 774858 781833 0.861586 + . ID=CGI_10025123; scaffold241 GLEAN mRNA 782246 799943 0.997621 - . ID=CGI_10025124; scaffold241 GLEAN promoter 793639 794638 0.579463 + . ID=CGI_10025125; scaffold241 GLEAN mRNA 794639 795295 0.579463 + . ID=CGI_10025125; scaffold241 TRF Tandem_Repeat 799271 799307 74 + . . scaffold241 GLEAN promoter 799944 800943 0.997621 - . ID=CGI_10025124; scaffold241 TRF Tandem_Repeat 800795 800834 71 + . . scaffold241 GLEAN mRNA 807537 819112 0.999598 - . ID=CGI_10025126; scaffold241 TRF Tandem_Repeat 814493 814525 59 + . . scaffold241 GLEAN promoter 819113 820112 0.999598 - . ID=CGI_10025126; scaffold241 TRF Tandem_Repeat 819527 819593 134 + . . scaffold241 GLEAN mRNA 821350 823580 1 - . ID=CGI_10025127; scaffold241 GLEAN promoter 823581 824580 1 - . ID=CGI_10025127; scaffold241 GLEAN promoter 826980 827979 0.515736 + . ID=CGI_10025128; scaffold241 GLEAN mRNA 827980 845173 0.515736 + . ID=CGI_10025128; scaffold241 TRF Tandem_Repeat 830298 831044 937 + . . scaffold241 WUBlastX LINE_L1 856173 856526 52 + . . scaffold241 WUBlastX LINE_L1-Tx1 856254 856535 92 + . . scaffold241 WUBlastX LINE_L1 856547 856675 58 + . . scaffold241 WUBlastX LINE_L1-Tx1 856645 857373 326 + . . scaffold241 TRF Tandem_Repeat 867627 867676 100 + . . scaffold241 TRF Tandem_Repeat 873882 874020 125 + . . scaffold241 TRF Tandem_Repeat 873928 874036 92 + . . scaffold241 TRF Tandem_Repeat 875571 875611 75 + . . scaffold241 GLEAN mRNA 881925 909481 0.988213 - . ID=CGI_10025129; scaffold241 TRF Tandem_Repeat 885240 885302 108 + . . scaffold241 TRF Tandem_Repeat 885240 885324 100 + . . scaffold241 GLEAN promoter 909482 910481 0.988213 - . ID=CGI_10025129; scaffold241 GLEAN mRNA 911891 913896 0.999994 - . ID=CGI_10025130; scaffold241 TRF Tandem_Repeat 912656 912683 56 + . . scaffold241 GLEAN promoter 913897 914896 0.999994 - . ID=CGI_10025130; scaffold241 TRF Tandem_Repeat 931147 931202 58 + . . scaffold241 TRF Tandem_Repeat 931147 931206 66 + . . scaffold241 WUBlastX LINE_L1-Tx1 934327 935535 302 - . . scaffold241 GLEAN promoter 935181 936180 0.985705 + . ID=CGI_10025131; scaffold241 WUBlastX LINE_L1 935532 935825 35 - . . scaffold241 WUBlastX LINE_L1-Tx1 935715 935858 33 - . . scaffold241 GLEAN mRNA 936181 941146 0.985705 + . ID=CGI_10025131; scaffold241 TRF Tandem_Repeat 936533 936720 286 + . . scaffold241 WUBlastX LINE_RTE-X 942403 943134 182 + . . scaffold241 GLEAN mRNA 945955 953450 0.999676 - . ID=CGI_10025132; scaffold241 GLEAN promoter 953451 954450 0.999676 - . ID=CGI_10025132; scaffold241 GLEAN promoter 956507 957506 0.999676 + . ID=CGI_10025133; scaffold241 GLEAN mRNA 957507 958673 0.999676 + . ID=CGI_10025133; scaffold241 TRF Tandem_Repeat 958806 959513 922 + . . scaffold241 TRF Tandem_Repeat 958806 959489 807 + . . scaffold241 TRF Tandem_Repeat 965978 966069 89 + . . scaffold241 WUBlastX LINE_RTE-X 968904 969008 32 - . . scaffold241 WUBlastX LINE_RTE-X 969211 969513 31 - . . scaffold241 WUBlastX LINE_RTE-X 969211 969345 37 - . . scaffold241 TRF Tandem_Repeat 970468 970509 84 + . . scaffold241 TRF Tandem_Repeat 971243 971279 65 + . . scaffold241 TRF Tandem_Repeat 971661 971712 88 + . . scaffold241 TRF Tandem_Repeat 973503 974404 1316 + . . scaffold241 TRF Tandem_Repeat 976408 976432 50 + . . scaffold241 TRF Tandem_Repeat 976430 976462 66 + . . scaffold241 TRF Tandem_Repeat 985184 985229 58 + . . scaffold241 TRF Tandem_Repeat 985184 985236 62 + . . scaffold241 TRF Tandem_Repeat 985406 986626 1632 + . . scaffold241 GLEAN promoter 992518 993517 0.777637 + . ID=CGI_10025134; scaffold241 GLEAN mRNA 993518 993904 0.777637 + . ID=CGI_10025134; scaffold241 GLEAN mRNA 995043 998322 1 - . ID=CGI_10025135; scaffold241 TRF Tandem_Repeat 996378 996441 128 + . . scaffold241 GLEAN promoter 998323 999322 1 - . ID=CGI_10025135; scaffold241 WUBlastX LTR_Gypsy 1009344 1009784 205 + . . scaffold241 WUBlastX LTR_Gypsy 1009344 1010090 198 + . . scaffold241 GLEAN mRNA 1019098 1033957 0.999938 - . ID=CGI_10025136; scaffold241 TRF Tandem_Repeat 1029754 1029792 78 + . . scaffold241 TRF Tandem_Repeat 1032581 1032688 126 + . . scaffold241 TRF Tandem_Repeat 1032687 1032897 178 + . . scaffold241 TRF Tandem_Repeat 1032980 1033065 109 + . . scaffold241 GLEAN promoter 1033958 1034957 0.999938 - . ID=CGI_10025136; scaffold241 TRF Tandem_Repeat 1036378 1036436 118 + . . scaffold242 TRF Tandem_Repeat 360 395 65 + . . scaffold242 TRF Tandem_Repeat 2193 2611 401 + . . scaffold242 TRF Tandem_Repeat 3148 3288 122 + . . scaffold242 TRF Tandem_Repeat 5756 5782 54 + . . scaffold242 TRF Tandem_Repeat 37624 37685 99 + . . scaffold242 TRF Tandem_Repeat 38298 38350 106 + . . scaffold242 TRF Tandem_Repeat 40720 40930 386 + . . scaffold242 TRF Tandem_Repeat 49274 49344 142 + . . scaffold242 GLEAN promoter 55575 56574 0.75819 + . ID=CGI_10007081; scaffold242 GLEAN mRNA 56575 58841 0.75819 + . ID=CGI_10007081; scaffold242 TRF Tandem_Repeat 68024 68066 86 + . . scaffold242 TRF Tandem_Repeat 68503 68555 99 + . . scaffold242 GLEAN mRNA 68676 70397 1 - . ID=CGI_10007082; scaffold242 GLEAN promoter 70398 71397 1 - . ID=CGI_10007082; scaffold242 TRF Tandem_Repeat 71544 71830 396 + . . scaffold242 TRF Tandem_Repeat 72515 72548 59 + . . scaffold242 TRF Tandem_Repeat 73023 73067 58 + . . scaffold242 TRF Tandem_Repeat 73823 73882 104 + . . scaffold242 GLEAN promoter 74832 75831 0.771995 + . ID=CGI_10007083; scaffold242 TRF Tandem_Repeat 75419 75666 397 + . . scaffold242 WUBlastX LTR_Pao 75754 76443 35 + . . scaffold242 GLEAN mRNA 75832 84666 0.771995 + . ID=CGI_10007083; scaffold242 WUBlastX LTR_Pao 75970 76335 84 + . . scaffold242 WUBlastX LTR_Pao 76093 76755 150 + . . scaffold242 WUBlastX LTR_Pao 76722 77108 203 + . . scaffold242 WUBlastX LTR_Pao 76722 77186 194 + . . scaffold242 WUBlastX LTR_Pao 76737 77306 48 + . . scaffold242 WUBlastX LTR_Pao 78064 78513 64 + . . scaffold242 WUBlastX LTR_Pao 78145 78513 237 + . . scaffold242 WUBlastX LTR_Pao 78512 79093 397 + . . scaffold242 WUBlastX LTR_Pao 79099 80460 314 + . . scaffold242 WUBlastX LTR_Pao 79405 80487 992 + . . scaffold242 TRF Tandem_Repeat 86407 86445 60 + . . scaffold242 GLEAN mRNA 89501 89812 0.618241 - . ID=CGI_10007084; scaffold242 GLEAN promoter 89813 90812 0.618241 - . ID=CGI_10007084; scaffold242 WUBlastX LTR_Gypsy 89851 90084 48 - . . scaffold242 TRF Tandem_Repeat 93223 94088 809 + . . scaffold242 TRF Tandem_Repeat 96075 96144 79 + . . scaffold242 TRF Tandem_Repeat 96086 96144 77 + . . scaffold242 TRF Tandem_Repeat 96086 96144 72 + . . scaffold242 GLEAN mRNA 110967 126116 0.999674 - . ID=CGI_10007085; scaffold242 TRF Tandem_Repeat 121521 121565 90 + . . scaffold242 GLEAN promoter 125246 126245 0.931496 + . ID=CGI_10007086; scaffold242 GLEAN promoter 126117 127116 0.999674 - . ID=CGI_10007085; scaffold242 GLEAN mRNA 126246 129428 0.931496 + . ID=CGI_10007086; scaffold242 WUBlastX LTR_Gypsy 128787 128966 33 + . . scaffold242 TRF Tandem_Repeat 134689 134745 53 + . . scaffold242 TRF Tandem_Repeat 134701 134747 51 + . . scaffold242 WUBlastX LINE_L1 136518 137270 78 + . . scaffold242 WUBlastX LINE_L1 136617 137105 249 + . . scaffold242 WUBlastX LINE_RTE-X 137301 140756 966 + . . scaffold242 WUBlastX LINE_RTE-X 138318 140741 1061 + . . scaffold242 GLEAN promoter 148433 149432 0.532389 + . ID=CGI_10007087; scaffold242 GLEAN mRNA 149433 151662 0.532389 + . ID=CGI_10007087; scaffold242 TRF Tandem_Repeat 150987 151164 230 + . . scaffold242 TRF Tandem_Repeat 153324 153371 96 + . . scaffold242 TRF Tandem_Repeat 156393 156782 494 + . . scaffold242 TRF Tandem_Repeat 157817 157857 82 + . . scaffold242 GLEAN promoter 163175 164174 0.999994 + . ID=CGI_10007088; scaffold242 GLEAN mRNA 164175 167164 0.999994 + . ID=CGI_10007088; scaffold242 TRF Tandem_Repeat 164615 165262 772 + . . scaffold242 GLEAN promoter 169185 170184 0.999989 + . ID=CGI_10007089; scaffold242 GLEAN mRNA 170185 170739 0.999989 + . ID=CGI_10007089; scaffold24238 GLEAN promoter 1 425 1 + . ID=CGI_10000167; scaffold24238 GLEAN mRNA 426 1867 1 + . ID=CGI_10000167; scaffold243 GLEAN mRNA 6831 23380 0.981358 - . ID=CGI_10006809; scaffold243 WUBlastX RC_Helitron 13481 13903 384 - . . scaffold243 GLEAN promoter 13767 14766 0.618039 + . ID=CGI_10006810; scaffold243 GLEAN promoter 14455 15454 0.999134 + . ID=CGI_10006811; scaffold243 GLEAN mRNA 14767 15060 0.618039 + . ID=CGI_10006810; scaffold243 GLEAN mRNA 15455 15652 0.999134 + . ID=CGI_10006811; scaffold243 TRF Tandem_Repeat 16661 16687 54 + . . scaffold243 GLEAN promoter 23381 24380 0.981358 - . ID=CGI_10006809; scaffold243 GLEAN mRNA 25085 40840 0.608898 - . ID=CGI_10006812; scaffold243 GLEAN promoter 29219 30218 0.996041 + . ID=CGI_10006813; scaffold243 GLEAN mRNA 30219 44504 0.996041 + . ID=CGI_10006813; scaffold243 TRF Tandem_Repeat 37101 37157 114 + . . scaffold243 GLEAN promoter 40841 41840 0.608898 - . ID=CGI_10006812; scaffold243 WUBlastX DNA_hAT-Tip100 43015 43761 291 + . . scaffold243 WUBlastX DNA_hAT-Tip100 43902 44114 42 + . . scaffold243 WUBlastX DNA_hAT-Tip100 44457 44495 20 + . . scaffold243 WUBlastX DNA_hAT-Tip100 44706 45227 140 + . . scaffold243 GLEAN mRNA 45508 46823 0.518363 - . ID=CGI_10006814; scaffold243 WUBlastX DNA_Kolobok 45771 45845 34 - . . scaffold243 WUBlastX DNA_Kolobok 45931 46206 165 - . . scaffold243 WUBlastX DNA_Kolobok 45931 46275 159 - . . scaffold243 WUBlastX DNA_Kolobok 46617 46901 151 - . . scaffold243 GLEAN promoter 46824 47823 0.518363 - . ID=CGI_10006814; scaffold243 GLEAN mRNA 47009 48903 1 - . ID=CGI_10006815; scaffold243 GLEAN promoter 48904 49903 1 - . ID=CGI_10006815; scaffold243 TRF Tandem_Repeat 49333 49449 120 + . . scaffold243 TRF Tandem_Repeat 50222 50255 68 + . . scaffold243 GLEAN promoter 73915 74914 0.993907 + . ID=CGI_10006816; scaffold243 GLEAN mRNA 74915 77503 0.993907 + . ID=CGI_10006816; scaffold243 GLEAN promoter 106331 107330 0.913043 + . ID=CGI_10006817; scaffold243 GLEAN mRNA 107331 122281 0.913043 + . ID=CGI_10006817; scaffold243 WUBlastX LINE_RTE-BovB 108387 108593 118 - . . scaffold243 WUBlastX LTR_Gypsy 116919 116960 20 - . . scaffold243 WUBlastX LTR_Gypsy 117568 117699 75 - . . scaffold243 WUBlastX LTR_Gypsy-Cigr 117632 119119 380 - . . scaffold243 WUBlastX LTR_Gypsy 117674 118318 474 - . . scaffold243 WUBlastX LTR_Gypsy 118838 119242 38 - . . scaffold243 WUBlastX LTR_Gypsy 119476 119916 48 - . . scaffold243 GLEAN mRNA 119766 120167 0.777732 - . ID=CGI_10006818; scaffold243 GLEAN promoter 120168 121167 0.777732 - . ID=CGI_10006818; scaffold243 TRF Tandem_Repeat 121564 121590 54 + . . scaffold243 GLEAN mRNA 121694 122167 0.992212 - . ID=CGI_10006819; scaffold243 GLEAN promoter 122168 123167 0.992212 - . ID=CGI_10006819; scaffold243 GLEAN mRNA 122238 122861 0.74343 - . ID=CGI_10006820; scaffold243 GLEAN promoter 122862 123861 0.74343 - . ID=CGI_10006820; scaffold243 GLEAN mRNA 123487 124119 1 - . ID=CGI_10006821; scaffold243 GLEAN promoter 124120 125119 1 - . ID=CGI_10006821; scaffold243 GLEAN mRNA 124258 124623 0.733495 - . ID=CGI_10006822; scaffold243 GLEAN promoter 124624 125623 0.733495 - . ID=CGI_10006822; scaffold243 TRF Tandem_Repeat 130148 130206 64 + . . scaffold243 TRF Tandem_Repeat 131985 132522 936 + . . scaffold243 WUBlastX LINE_RTE-X 135591 135695 45 - . . scaffold243 WUBlastX LINE_RTE-X 135609 135707 45 - . . scaffold243 WUBlastX LINE_RTE-X 135612 135743 44 - . . scaffold243 WUBlastX LINE_RTE-X 135782 136960 278 - . . scaffold243 WUBlastX LINE_RTE-X 135995 136945 365 - . . scaffold243 WUBlastX LINE_RTE-X 136193 136945 407 - . . scaffold243 WUBlastX LINE_RTE-X 136924 137526 68 - . . scaffold243 WUBlastX LINE_RTE-X 136954 137427 80 - . . scaffold243 WUBlastX LINE_RTE-X 136957 137796 53 - . . scaffold243 WUBlastX LINE_RTE-X 138512 139183 155 - . . scaffold243 WUBlastX LINE_RTE-X 138512 139063 183 - . . scaffold243 WUBlastX LINE_RTE-BovB 139111 139245 24 - . . scaffold243 WUBlastX LINE_RTE-X 139111 139224 37 - . . scaffold243 WUBlastX LINE_L1 139287 140012 163 - . . scaffold243 WUBlastX LINE_L1 139287 139745 210 - . . scaffold243 TRF Tandem_Repeat 145118 145155 76 + . . scaffold243 TRF Tandem_Repeat 145182 145227 92 + . . scaffold243 TRF Tandem_Repeat 146828 146879 63 + . . scaffold243 TRF Tandem_Repeat 147137 147170 54 + . . scaffold243 TRF Tandem_Repeat 148050 148085 72 + . . scaffold243 TRF Tandem_Repeat 148646 148696 102 + . . scaffold243 TRF Tandem_Repeat 150607 150662 112 + . . scaffold243 TRF Tandem_Repeat 161391 161518 195 + . . scaffold244 GLEAN mRNA 2785 17486 0.933727 - . ID=CGI_10001984; scaffold244 GLEAN promoter 17487 18486 0.933727 - . ID=CGI_10001984; scaffold244 GLEAN mRNA 30963 34603 1 - . ID=CGI_10001985; scaffold244 GLEAN promoter 34604 35603 1 - . ID=CGI_10001985; scaffold24554 GLEAN promoter 382 1381 0.999372 + . ID=CGI_10000197; scaffold24554 GLEAN mRNA 1382 1639 0.999372 + . ID=CGI_10000197; scaffold246 GLEAN promoter 8617 9616 0.99755 + . ID=CGI_10001799; scaffold246 GLEAN mRNA 9617 19206 0.99755 + . ID=CGI_10001799; scaffold247 WUBlastX DNA_Academ 1159 1773 37 + . . scaffold247 WUBlastX DNA_Academ 1252 1752 62 + . . scaffold247 WUBlastX DNA_TcMar-Tc1 6681 6938 40 - . . scaffold247 WUBlastX DNA_MuDR 31778 32995 244 + . . scaffold247 WUBlastX DNA_Harbinger 45510 45857 91 - . . scaffold247 GLEAN promoter 47563 48562 0.347971 + . ID=CGI_10018589; scaffold247 GLEAN mRNA 48563 63949 0.347971 + . ID=CGI_10018589; scaffold247 TRF Tandem_Repeat 59457 59505 98 + . . scaffold247 TRF Tandem_Repeat 80942 81010 57 + . . scaffold247 TRF Tandem_Repeat 82819 82856 76 + . . scaffold247 TRF Tandem_Repeat 83307 83438 94 + . . scaffold247 TRF Tandem_Repeat 83373 83438 69 + . . scaffold247 TRF Tandem_Repeat 83457 83515 73 + . . scaffold247 GLEAN promoter 83927 84926 1 + . ID=CGI_10018590; scaffold247 GLEAN mRNA 84927 85232 1 + . ID=CGI_10018590; scaffold247 TRF Tandem_Repeat 87041 87793 928 + . . scaffold247 TRF Tandem_Repeat 91612 91658 94 + . . scaffold247 GLEAN mRNA 92083 94942 0.666522 - . ID=CGI_10018591; scaffold247 TRF Tandem_Repeat 92375 92409 70 + . . scaffold247 TRF Tandem_Repeat 92790 92828 71 + . . scaffold247 TRF Tandem_Repeat 93981 94014 68 + . . scaffold247 TRF Tandem_Repeat 94644 94720 147 + . . scaffold247 GLEAN promoter 94943 95942 0.666522 - . ID=CGI_10018591; scaffold247 TRF Tandem_Repeat 109125 111663 3571 + . . scaffold247 TRF Tandem_Repeat 128118 128174 62 + . . scaffold247 TRF Tandem_Repeat 128120 128172 72 + . . scaffold247 TRF Tandem_Repeat 128121 128168 53 + . . scaffold247 GLEAN promoter 138499 139498 0.991247 + . ID=CGI_10018592; scaffold247 GLEAN mRNA 139499 148449 0.991247 + . ID=CGI_10018592; scaffold247 TRF Tandem_Repeat 169147 169181 54 + . . scaffold247 TRF Tandem_Repeat 180916 180969 108 + . . scaffold247 TRF Tandem_Repeat 185936 185981 92 + . . scaffold247 TRF Tandem_Repeat 190880 191361 639 + . . scaffold247 GLEAN promoter 196989 197988 0.419557 + . ID=CGI_10018593; scaffold247 GLEAN mRNA 197989 208519 0.419557 + . ID=CGI_10018593; scaffold247 WUBlastX LINE_RTE-BovB 202505 202693 36 - . . scaffold247 WUBlastX LINE_RTE-BovB 202585 202938 46 - . . scaffold247 WUBlastX LINE_RTE-BovB 202657 202938 107 - . . scaffold247 WUBlastX LINE_RTE-BovB 202935 203150 24 - . . scaffold247 WUBlastX LINE_RTE-BovB 203560 203664 32 - . . scaffold247 WUBlastX LINE_RTE-BovB 203560 203631 32 - . . scaffold247 WUBlastX LINE_RTE-BovB 203682 203972 96 - . . scaffold247 WUBlastX LINE_RTE-BovB 203993 204367 57 - . . scaffold247 WUBlastX LINE_RTE-BovB 204110 204385 69 - . . scaffold247 WUBlastX LINE_RTE-BovB 204567 204740 26 - . . scaffold247 WUBlastX LINE_RTE-BovB 204630 204800 37 - . . scaffold247 WUBlastX LINE_RTE-BovB 204681 204884 22 - . . scaffold247 TRF Tandem_Repeat 212923 212947 50 + . . scaffold247 WUBlastX DNA_Harbinger 220425 221126 271 - . . scaffold247 WUBlastX DNA_Harbinger 221093 221269 85 - . . scaffold247 TRF Tandem_Repeat 230972 231091 240 + . . scaffold247 TRF Tandem_Repeat 236021 236093 76 + . . scaffold247 TRF Tandem_Repeat 242887 242913 54 + . . scaffold247 TRF Tandem_Repeat 244199 244236 76 + . . scaffold247 TRF Tandem_Repeat 252604 252629 52 + . . scaffold247 TRF Tandem_Repeat 260924 261008 143 + . . scaffold247 TRF Tandem_Repeat 272207 272247 68 + . . scaffold247 TRF Tandem_Repeat 272245 272292 96 + . . scaffold247 TRF Tandem_Repeat 272337 272383 66 + . . scaffold247 TRF Tandem_Repeat 272353 272448 106 + . . scaffold247 TRF Tandem_Repeat 272357 272448 121 + . . scaffold247 TRF Tandem_Repeat 272357 272448 121 + . . scaffold247 TRF Tandem_Repeat 291430 291454 50 + . . scaffold247 TRF Tandem_Repeat 291452 291503 95 + . . scaffold247 TRF Tandem_Repeat 308341 308367 54 + . . scaffold247 WUBlastX DNA_Harbinger 316448 316588 95 + . . scaffold247 TRF Tandem_Repeat 318317 318368 50 + . . scaffold247 TRF Tandem_Repeat 318317 318377 61 + . . scaffold247 TRF Tandem_Repeat 318492 318540 62 + . . scaffold247 TRF Tandem_Repeat 318492 318531 53 + . . scaffold247 TRF Tandem_Repeat 318493 318531 60 + . . scaffold247 TRF Tandem_Repeat 324075 324116 66 + . . scaffold247 GLEAN mRNA 324544 333278 0.675637 - . ID=CGI_10018594; scaffold247 WUBlastX LTR_DIRS 326796 327707 267 + . . scaffold247 WUBlastX LTR_DIRS 327904 328095 119 + . . scaffold247 WUBlastX LTR_DIRS 327910 328143 100 + . . scaffold247 WUBlastX LINE_L1-Tx1 329473 330546 65 - . . scaffold247 WUBlastX LINE_L1-Tx1 330438 331217 262 - . . scaffold247 WUBlastX LINE_L1-Tx1 330585 331448 191 - . . scaffold247 WUBlastX LINE_RTE-BovB 331255 331491 37 - . . scaffold247 GLEAN promoter 333279 334278 0.675637 - . ID=CGI_10018594; scaffold247 GLEAN mRNA 333487 347498 0.999214 - . ID=CGI_10018595; scaffold247 GLEAN promoter 347499 348498 0.999214 - . ID=CGI_10018595; scaffold247 WUBlastX LINE_RTE-X 349302 350774 669 - . . scaffold247 WUBlastX LINE_RTE-X 349302 351218 647 - . . scaffold247 WUBlastX LINE_L2 349425 351710 112 - . . scaffold247 WUBlastX LINE_CR1 357517 357591 24 - . . scaffold247 WUBlastX LINE_RTE-X 357609 358037 45 - . . scaffold247 WUBlastX LINE_RTE-X 357762 358013 53 - . . scaffold247 WUBlastX LINE_CR1-L2 357946 358467 73 - . . scaffold247 WUBlastX LINE_Proto2 358060 358494 95 - . . scaffold247 WUBlastX LINE_I 358449 358721 54 - . . scaffold247 WUBlastX LINE_CR1 358464 358769 49 - . . scaffold247 WUBlastX LINE_CR1 358807 359061 28 - . . scaffold247 GLEAN promoter 385908 386907 0.669104 + . ID=CGI_10018597; scaffold247 GLEAN mRNA 386908 392338 0.669104 + . ID=CGI_10018597; scaffold247 TRF Tandem_Repeat 399276 400255 1264 + . . scaffold247 WUBlastX DNA_TcMar-Fot1 400921 401691 235 + . . scaffold247 WUBlastX DNA_TcMar-Pogo 409772 409978 88 - . . scaffold247 WUBlastX DNA_TcMar-Pogo 409933 410172 78 - . . scaffold247 WUBlastX DNA_TcMar-Pogo 410059 410205 81 - . . scaffold247 WUBlastX DNA_TcMar-Tigge 410077 410250 50 - . . scaffold247 WUBlastX DNA_TcMar-Pogo 410256 410687 168 - . . scaffold247 WUBlastX DNA_TcMar-Tigge 410678 410764 28 - . . scaffold247 GLEAN promoter 413243 414242 0.989299 + . ID=CGI_10018598; scaffold247 GLEAN mRNA 414243 422194 0.989299 + . ID=CGI_10018598; scaffold247 TRF Tandem_Repeat 423085 423909 552 + . . scaffold247 WUBlastX DNA_Harbinger 427547 427660 40 - . . scaffold247 WUBlastX DNA_Harbinger 428331 428441 34 - . . scaffold247 WUBlastX DNA_Merlin 433571 433750 67 - . . scaffold247 WUBlastX DNA_Merlin 434551 434721 78 - . . scaffold247 WUBlastX DNA_Merlin 434551 434760 61 - . . scaffold247 GLEAN promoter 440716 441715 0.663525 + . ID=CGI_10018599; scaffold247 GLEAN mRNA 441716 469934 0.663525 + . ID=CGI_10018599; scaffold247 TRF Tandem_Repeat 454140 454177 67 + . . scaffold247 TRF Tandem_Repeat 487353 488089 921 + . . scaffold247 WUBlastX DNA_Harbinger 492883 493149 124 - . . scaffold247 WUBlastX DNA_Harbinger 493166 493333 57 - . . scaffold247 WUBlastX DNA_Harbinger 493214 493336 74 - . . scaffold247 WUBlastX DNA_Harbinger 493214 493369 47 - . . scaffold247 WUBlastX DNA_Harbinger 493409 493543 60 - . . scaffold247 WUBlastX DNA_Harbinger 493436 493651 57 - . . scaffold247 WUBlastX DNA_Harbinger 494306 494425 97 - . . scaffold247 TRF Tandem_Repeat 494579 494772 155 + . . scaffold247 TRF Tandem_Repeat 494579 494834 191 + . . scaffold247 TRF Tandem_Repeat 495930 496021 86 + . . scaffold247 TRF Tandem_Repeat 495938 496021 53 + . . scaffold247 TRF Tandem_Repeat 496801 497102 284 + . . scaffold247 TRF Tandem_Repeat 496805 497138 317 + . . scaffold247 TRF Tandem_Repeat 497184 497224 82 + . . scaffold247 WUBlastX DNA_Harbinger 497546 497947 140 - . . scaffold247 WUBlastX LTR_Gypsy 499836 499874 23 - . . scaffold247 WUBlastX LTR_Gypsy-Cigr 499875 500894 475 - . . scaffold247 WUBlastX LTR_Gypsy 500890 501114 126 - . . scaffold247 WUBlastX LTR_Gypsy 500917 501150 125 - . . scaffold247 WUBlastX LTR_Gypsy 500920 501243 89 - . . scaffold247 WUBlastX LTR_Gypsy 500920 501405 49 - . . scaffold247 WUBlastX LTR_Gypsy 501390 501584 72 - . . scaffold247 WUBlastX LTR_Gypsy-Cigr 501429 501596 119 - . . scaffold247 WUBlastX LTR_Gypsy 501480 501644 85 - . . scaffold247 WUBlastX LTR_Gypsy 501483 501683 61 - . . scaffold247 WUBlastX LTR_Gypsy 501483 501740 54 - . . scaffold247 WUBlastX LTR_Gypsy 501642 501779 23 - . . scaffold247 WUBlastX LTR_ERV1 502636 502665 23 - . . scaffold247 WUBlastX LTR_Gypsy 502851 503378 151 - . . scaffold247 WUBlastX LTR_Gypsy-Cigr 502950 503342 312 - . . scaffold247 WUBlastX LTR_Gypsy-Cigr 503321 505012 358 - . . scaffold247 WUBlastX LTR_Gypsy-Cigr 503804 504472 412 - . . scaffold247 WUBlastX LTR_Gypsy 504782 505129 29 - . . scaffold247 WUBlastX LTR_Gypsy 504797 505051 44 - . . scaffold247 WUBlastX LTR_Gypsy 505156 505524 32 - . . scaffold247 WUBlastX LTR_Gypsy 505414 505542 34 - . . scaffold247 WUBlastX LTR_DIRS 517088 517309 104 + . . scaffold247 WUBlastX LTR_DIRS 518657 519019 253 + . . scaffold247 WUBlastX LTR_DIRS 518705 519076 125 + . . scaffold247 WUBlastX LTR_DIRS 519079 519135 25 + . . scaffold247 WUBlastX LTR_DIRS 519125 519331 74 + . . scaffold247 WUBlastX LTR_DIRS 519324 520196 360 + . . scaffold247 WUBlastX LTR_DIRS 520088 520393 156 + . . scaffold247 WUBlastX LTR_DIRS 520333 520443 49 + . . scaffold247 WUBlastX LTR_DIRS 520442 520774 155 + . . scaffold247 GLEAN promoter 521513 522512 0.658948 + . ID=CGI_10018600; scaffold247 GLEAN mRNA 522513 524509 0.658948 + . ID=CGI_10018600; scaffold247 GLEAN mRNA 526055 531172 0.6799 - . ID=CGI_10018601; scaffold247 GLEAN promoter 531173 532172 0.6799 - . ID=CGI_10018601; scaffold247 GLEAN promoter 531387 532386 1 + . ID=CGI_10018602; scaffold247 GLEAN mRNA 532387 533229 1 + . ID=CGI_10018602; scaffold247 TRF Tandem_Repeat 539813 539848 72 + . . scaffold247 TRF Tandem_Repeat 540042 540087 74 + . . scaffold247 TRF Tandem_Repeat 542118 542207 126 + . . scaffold247 WUBlastX DNA_Academ 548450 548989 41 + . . scaffold247 TRF Tandem_Repeat 552163 552202 71 + . . scaffold247 GLEAN promoter 552590 553589 1 + . ID=CGI_10018603; scaffold247 TRF Tandem_Repeat 552756 552801 92 + . . scaffold247 GLEAN mRNA 553590 557433 1 + . ID=CGI_10018603; scaffold24702 GLEAN promoter 1 251 0.999987 + . ID=CGI_10000192; scaffold24702 GLEAN mRNA 252 2630 0.999987 + . ID=CGI_10000192; scaffold24784 GLEAN promoter 892 1891 0.999875 + . ID=CGI_10000208; scaffold24784 GLEAN mRNA 1417 1602 0.997359 - . ID=CGI_10000207; scaffold24784 GLEAN promoter 1603 2602 0.997359 - . ID=CGI_10000207; scaffold24784 GLEAN mRNA 1892 2559 0.999875 + . ID=CGI_10000208; scaffold248 WUBlastX LINE_L2 18401 20833 1137 - . . scaffold248 TRF Tandem_Repeat 32710 32743 50 + . . scaffold248 GLEAN mRNA 37096 41278 0.651135 - . ID=CGI_10017214; scaffold248 GLEAN promoter 41279 42278 0.651135 - . ID=CGI_10017214; scaffold248 TRF Tandem_Repeat 43697 43722 52 + . . scaffold248 GLEAN mRNA 47377 51855 0.999675 - . ID=CGI_10017215; scaffold248 GLEAN promoter 51856 52855 0.999675 - . ID=CGI_10017215; scaffold248 GLEAN promoter 52101 53100 0.998657 + . ID=CGI_10017216; scaffold248 GLEAN mRNA 53101 57340 0.998657 + . ID=CGI_10017216; scaffold248 TRF Tandem_Repeat 58367 58410 70 + . . scaffold248 TRF Tandem_Repeat 58796 58841 92 + . . scaffold248 TRF Tandem_Repeat 60646 60688 86 + . . scaffold248 GLEAN mRNA 60915 62996 0.654403 - . ID=CGI_10017217; scaffold248 GLEAN promoter 62997 63996 0.654403 - . ID=CGI_10017217; scaffold248 GLEAN mRNA 63506 77549 0.999109 - . ID=CGI_10017218; scaffold248 TRF Tandem_Repeat 65548 66189 748 + . . scaffold248 TRF Tandem_Repeat 65548 66189 735 + . . scaffold248 TRF Tandem_Repeat 75097 75135 78 + . . scaffold248 GLEAN promoter 76923 77922 1 + . ID=CGI_10017219; scaffold248 GLEAN promoter 77550 78549 0.999109 - . ID=CGI_10017218; scaffold248 GLEAN mRNA 77923 82009 1 + . ID=CGI_10017219; scaffold248 GLEAN promoter 81023 82022 0.53738 + . ID=CGI_10017220; scaffold248 GLEAN mRNA 82023 112174 0.53738 + . ID=CGI_10017220; scaffold248 WUBlastX LTR_Pao 86227 86535 230 - . . scaffold248 TRF Tandem_Repeat 89726 90397 216 + . . scaffold248 TRF Tandem_Repeat 89885 90401 591 + . . scaffold248 TRF Tandem_Repeat 91733 91947 394 + . . scaffold248 TRF Tandem_Repeat 96466 97200 551 + . . scaffold248 TRF Tandem_Repeat 96474 97220 399 + . . scaffold248 TRF Tandem_Repeat 96483 97220 493 + . . scaffold248 TRF Tandem_Repeat 101345 101708 577 + . . scaffold248 TRF Tandem_Repeat 103065 103260 392 + . . scaffold248 TRF Tandem_Repeat 106016 107118 1970 + . . scaffold248 TRF Tandem_Repeat 107863 107908 58 + . . scaffold248 TRF Tandem_Repeat 108078 109438 1902 + . . scaffold248 WUBlastX LINE_RTE-BovB 112231 112557 24 - . . scaffold248 WUBlastX LINE_L1 112291 112986 92 - . . scaffold248 WUBlastX LINE_RTE-BovB 112474 113004 153 - . . scaffold248 WUBlastX LINE_RTE-BovB 112645 113013 285 - . . scaffold248 WUBlastX LINE_RTE-BovB 112657 113115 117 - . . scaffold248 WUBlastX LINE_RTE-BovB 112998 113192 91 - . . scaffold248 WUBlastX LINE_RTE-BovB 113022 113234 85 - . . scaffold248 WUBlastX LTR_Gypsy 113375 113458 20 - . . scaffold248 WUBlastX LINE_RTE-X 113425 113538 26 - . . scaffold248 WUBlastX LTR_Gypsy 113594 114271 45 - . . scaffold248 WUBlastX LTR_Gypsy 113765 114235 110 - . . scaffold248 WUBlastX LTR_Gypsy 113840 114316 127 - . . scaffold248 WUBlastX LTR_Gypsy 113948 114265 241 - . . scaffold248 WUBlastX LTR_Gypsy 113948 114451 234 - . . scaffold248 WUBlastX LTR_Gypsy 114267 114539 87 - . . scaffold248 WUBlastX LTR_Gypsy 114580 114798 23 - . . scaffold248 WUBlastX LTR_Gypsy 114589 114723 24 - . . scaffold248 WUBlastX LTR_Gypsy 114987 115025 22 - . . scaffold248 GLEAN mRNA 116856 121223 0.999998 - . ID=CGI_10017221; scaffold248 TRF Tandem_Repeat 119165 119270 110 + . . scaffold248 TRF Tandem_Repeat 119165 119261 88 + . . scaffold248 TRF Tandem_Repeat 119504 119557 108 + . . scaffold248 TRF Tandem_Repeat 119611 119642 64 + . . scaffold248 TRF Tandem_Repeat 120839 120889 59 + . . scaffold248 GLEAN promoter 121224 122223 0.999998 - . ID=CGI_10017221; scaffold248 TRF Tandem_Repeat 122624 123251 696 + . . scaffold248 GLEAN mRNA 127093 133844 0.999999 - . ID=CGI_10017222; scaffold248 GLEAN promoter 133845 134844 0.999999 - . ID=CGI_10017222; scaffold248 WUBlastX LINE_RTE-X 137500 137799 53 - . . scaffold248 WUBlastX LINE_RTE-X 137623 137919 73 - . . scaffold248 WUBlastX LINE_RTE-X 138378 138920 154 - . . scaffold248 WUBlastX LINE_RTE-X 138378 138806 205 - . . scaffold248 WUBlastX LINE_RTE-X 138381 138701 223 - . . scaffold248 WUBlastX LINE_L2 138381 139232 46 - . . scaffold248 WUBlastX LINE_Penelope 139508 140179 145 - . . scaffold248 WUBlastX LINE_Penelope 140151 140684 175 - . . scaffold248 WUBlastX LINE_Penelope 140598 140786 43 - . . scaffold248 WUBlastX LINE_RTE-X 152088 152267 85 + . . scaffold248 WUBlastX LINE_RTE-X 152252 152584 118 + . . scaffold248 WUBlastX LINE_RTE-X 152626 152826 85 + . . scaffold248 WUBlastX LINE_RTE-X 152641 152955 78 + . . scaffold248 GLEAN promoter 157371 158370 1 + . ID=CGI_10017223; scaffold248 GLEAN mRNA 158371 161990 1 + . ID=CGI_10017223; scaffold248 TRF Tandem_Repeat 165465 165502 67 + . . scaffold248 GLEAN mRNA 169311 180940 0.413373 - . ID=CGI_10017224; scaffold248 GLEAN promoter 180941 181940 0.413373 - . ID=CGI_10017224; scaffold248 TRF Tandem_Repeat 186574 188037 2388 + . . scaffold248 TRF Tandem_Repeat 186651 186848 85 + . . scaffold248 TRF Tandem_Repeat 192504 192548 90 + . . scaffold248 TRF Tandem_Repeat 199054 199093 50 + . . scaffold248 GLEAN mRNA 199422 202278 0.412191 - . ID=CGI_10017225; scaffold248 GLEAN promoter 202279 203278 0.412191 - . ID=CGI_10017225; scaffold248 GLEAN promoter 202775 203774 0.989237 + . ID=CGI_10017226; scaffold248 GLEAN mRNA 203775 217196 0.989237 + . ID=CGI_10017226; scaffold248 TRF Tandem_Repeat 208767 209102 439 + . . scaffold248 TRF Tandem_Repeat 209267 209508 226 + . . scaffold248 GLEAN mRNA 217166 224324 0.999572 - . ID=CGI_10017227; scaffold248 TRF Tandem_Repeat 217748 218214 683 + . . scaffold248 TRF Tandem_Repeat 218063 218144 50 + . . scaffold248 GLEAN promoter 224325 225324 0.999572 - . ID=CGI_10017227; scaffold248 GLEAN mRNA 227902 236301 0.999386 - . ID=CGI_10017228; scaffold248 TRF Tandem_Repeat 228430 228601 222 + . . scaffold248 TRF Tandem_Repeat 228568 228818 94 + . . scaffold248 TRF Tandem_Repeat 228827 229105 241 + . . scaffold248 TRF Tandem_Repeat 230157 230684 828 + . . scaffold248 TRF Tandem_Repeat 230743 231073 113 + . . scaffold248 TRF Tandem_Repeat 231928 231986 102 + . . scaffold248 TRF Tandem_Repeat 236127 236177 102 + . . scaffold248 GLEAN promoter 236302 237301 0.999386 - . ID=CGI_10017228; scaffold248 GLEAN mRNA 240336 252037 0.9896 - . ID=CGI_10017229; scaffold248 TRF Tandem_Repeat 243884 244271 487 + . . scaffold248 TRF Tandem_Repeat 245395 245789 637 + . . scaffold248 TRF Tandem_Repeat 245395 245791 731 + . . scaffold248 GLEAN promoter 252038 253037 0.9896 - . ID=CGI_10017229; scaffold248 WUBlastX LINE_Penelope 252524 252682 62 + . . scaffold248 WUBlastX LINE_Penelope 252688 252927 22 + . . scaffold248 WUBlastX LINE_Penelope 253027 253101 21 + . . scaffold248 TRF Tandem_Repeat 256655 256855 271 + . . scaffold248 TRF Tandem_Repeat 256661 256856 123 + . . scaffold248 TRF Tandem_Repeat 257448 257659 237 + . . scaffold248 TRF Tandem_Repeat 258299 258324 52 + . . scaffold248 GLEAN promoter 262831 263830 0.981457 + . ID=CGI_10017230; scaffold248 GLEAN mRNA 263831 267429 0.981457 + . ID=CGI_10017230; scaffold248 TRF Tandem_Repeat 273922 274065 253 + . . scaffold248 TRF Tandem_Repeat 273983 274262 242 + . . scaffold248 WUBlastX LINE_RTE-X 274953 276695 857 - . . scaffold248 WUBlastX LINE_L2 275604 276989 112 - . . scaffold248 WUBlastX LINE_L2 277131 277238 20 - . . scaffold248 WUBlastX LINE_CR1 277457 277549 20 - . . scaffold248 TRF Tandem_Repeat 279381 279674 191 + . . scaffold248 TRF Tandem_Repeat 281455 281885 340 + . . scaffold248 TRF Tandem_Repeat 282796 282878 157 + . . scaffold248 GLEAN promoter 283129 284128 1 + . ID=CGI_10017231; scaffold248 TRF Tandem_Repeat 283624 284122 840 + . . scaffold248 GLEAN mRNA 284129 284557 1 + . ID=CGI_10017231; scaffold248 GLEAN mRNA 285041 292589 0.784598 - . ID=CGI_10017232; scaffold248 GLEAN promoter 292590 293589 0.784598 - . ID=CGI_10017232; scaffold248 GLEAN mRNA 292908 297570 0.999999 - . ID=CGI_10017233; scaffold248 TRF Tandem_Repeat 295762 295890 133 + . . scaffold248 GLEAN promoter 297571 298570 0.999999 - . ID=CGI_10017233; scaffold248 GLEAN mRNA 309560 310752 0.917991 - . ID=CGI_10017234; scaffold248 GLEAN promoter 310753 311752 0.917991 - . ID=CGI_10017234; scaffold248 TRF Tandem_Repeat 311257 311345 137 + . . scaffold248 TRF Tandem_Repeat 311392 311485 125 + . . scaffold248 TRF Tandem_Repeat 312053 312318 169 + . . scaffold248 TRF Tandem_Repeat 312131 312318 153 + . . scaffold248 GLEAN mRNA 318715 320988 0.999998 - . ID=CGI_10017235; scaffold248 GLEAN promoter 320989 321988 0.999998 - . ID=CGI_10017235; scaffold248 TRF Tandem_Repeat 326700 326931 145 + . . scaffold248 WUBlastX LTR_Gypsy 335435 336592 795 + . . scaffold248 WUBlastX LTR_Gypsy 335591 337876 435 + . . scaffold248 WUBlastX LTR_Gypsy-Cigr 337804 338442 361 + . . scaffold248 WUBlastX LTR_Gypsy 337804 338679 94 + . . scaffold248 WUBlastX LTR_Gypsy 338751 338882 20 + . . scaffold248 TRF Tandem_Repeat 345449 346194 861 + . . scaffold248 GLEAN promoter 351674 352673 1 + . ID=CGI_10017237; scaffold248 GLEAN mRNA 352674 354278 1 + . ID=CGI_10017237; scaffold248 TRF Tandem_Repeat 363054 363106 106 + . . scaffold248 TRF Tandem_Repeat 382719 382745 54 + . . scaffold248 TRF Tandem_Repeat 390249 390288 80 + . . scaffold248 TRF Tandem_Repeat 391400 391444 90 + . . scaffold248 TRF Tandem_Repeat 394135 394190 85 + . . scaffold248 TRF Tandem_Repeat 397155 397197 77 + . . scaffold248 TRF Tandem_Repeat 401473 401571 189 + . . scaffold248 WUBlastX LINE_L1-Tx1 401693 402310 117 - . . scaffold248 WUBlastX LINE_L1-Tx1 401777 402445 40 - . . scaffold248 WUBlastX LINE_L1-Tx1 402492 403412 109 - . . scaffold248 WUBlastX LINE_L1-Tx1 402819 403433 178 - . . scaffold248 WUBlastX LINE_L1-Tx1 402849 403319 224 - . . scaffold248 WUBlastX LINE_L1-Tx1 403329 403853 143 - . . scaffold248 WUBlastX LINE_L1-Tx1 403847 404278 269 - . . scaffold248 WUBlastX LINE_L1-Tx1 404266 404445 92 - . . scaffold248 WUBlastX LINE_L1-Tx1 404287 404493 63 - . . scaffold248 WUBlastX LINE_L2 405183 405611 95 - . . scaffold248 WUBlastX LINE_L1 405291 405680 65 - . . scaffold248 WUBlastX LINE_L1-Tx1 411583 411777 21 - . . scaffold248 TRF Tandem_Repeat 441724 441954 349 + . . scaffold248 TRF Tandem_Repeat 443063 443723 700 + . . scaffold248 TRF Tandem_Repeat 449279 449320 84 + . . scaffold248 TRF Tandem_Repeat 449430 449487 82 + . . scaffold248 TRF Tandem_Repeat 449430 449487 82 + . . scaffold248 TRF Tandem_Repeat 449442 449487 56 + . . scaffold248 TRF Tandem_Repeat 474669 474695 54 + . . scaffold248 TRF Tandem_Repeat 478749 478968 219 + . . scaffold248 TRF Tandem_Repeat 478770 478968 80 + . . scaffold248 TRF Tandem_Repeat 480057 480098 84 + . . scaffold248 TRF Tandem_Repeat 481027 481078 104 + . . scaffold248 TRF Tandem_Repeat 482096 482520 375 + . . scaffold248 TRF Tandem_Repeat 482096 482520 392 + . . scaffold248 GLEAN promoter 482285 483284 0.965913 + . ID=CGI_10017238; scaffold248 GLEAN mRNA 483285 484196 0.965913 + . ID=CGI_10017238; scaffold248 WUBlastX LTR_Pao 483327 484067 49 + . . scaffold248 WUBlastX LTR_Pao 483654 484151 25 + . . scaffold248 TRF Tandem_Repeat 484423 484583 71 + . . scaffold248 TRF Tandem_Repeat 484474 484582 81 + . . scaffold250 TRF Tandem_Repeat 6286 6326 82 + . . scaffold250 TRF Tandem_Repeat 15118 15398 371 + . . scaffold250 WUBlastX LTR_Ngaro 28451 28912 110 + . . scaffold250 WUBlastX LTR_Ngaro 29503 29892 53 + . . scaffold250 WUBlastX LTR_Ngaro 29595 29996 76 + . . scaffold250 WUBlastX LTR_Ngaro 30198 30371 21 + . . scaffold250 WUBlastX LTR_Ngaro 30243 30392 36 + . . scaffold250 WUBlastX LTR_Ngaro 30411 30620 35 + . . scaffold250 WUBlastX LTR_Ngaro 30459 30605 47 + . . scaffold250 WUBlastX DNA_TcMar-Tc1 30998 31339 66 - . . scaffold250 WUBlastX DNA_TcMar-Tc1 31040 31312 86 - . . scaffold250 WUBlastX DNA_TcMar-Tc1 31324 31683 75 - . . scaffold250 WUBlastX DNA_TcMar-Tc1 31348 32007 66 - . . scaffold250 TRF Tandem_Repeat 34896 35127 284 + . . scaffold250 TRF Tandem_Repeat 34897 35127 318 + . . scaffold251 GLEAN promoter 1 296 0.734255 + . ID=CGI_10005215; scaffold251 GLEAN mRNA 297 5896 0.734255 + . ID=CGI_10005215; scaffold251 WUBlastX LINE_RTE-X 15206 15601 76 + . . scaffold251 WUBlastX LINE_RTE-X 15248 15745 41 + . . scaffold251 WUBlastX LINE_RTE-X 15275 15598 98 + . . scaffold251 GLEAN mRNA 16871 39741 0.998838 - . ID=CGI_10005216; scaffold251 TRF Tandem_Repeat 17040 17640 1022 + . . scaffold251 TRF Tandem_Repeat 17046 17635 593 + . . scaffold251 TRF Tandem_Repeat 17191 17640 555 + . . scaffold251 TRF Tandem_Repeat 19606 19798 195 + . . scaffold251 TRF Tandem_Repeat 19606 19789 247 + . . scaffold251 TRF Tandem_Repeat 21025 21099 150 + . . scaffold251 TRF Tandem_Repeat 21874 22152 352 + . . scaffold251 TRF Tandem_Repeat 21874 22152 343 + . . scaffold251 GLEAN promoter 26105 27104 0.0632149 + . ID=CGI_10005217; scaffold251 GLEAN mRNA 27105 44764 0.0632149 + . ID=CGI_10005217; scaffold251 TRF Tandem_Repeat 29422 29718 452 + . . scaffold251 TRF Tandem_Repeat 34485 34647 96 + . . scaffold251 TRF Tandem_Repeat 34577 34722 123 + . . scaffold251 WUBlastX LTR_DIRS 37075 38733 964 + . . scaffold251 WUBlastX LTR_DIRS 38592 39527 403 + . . scaffold251 GLEAN promoter 39742 40741 0.998838 - . ID=CGI_10005216; scaffold251 GLEAN mRNA 39926 48331 0.987119 - . ID=CGI_10005218; scaffold251 TRF Tandem_Repeat 46005 46138 162 + . . scaffold251 TRF Tandem_Repeat 47711 47801 94 + . . scaffold251 GLEAN promoter 48332 49331 0.987119 - . ID=CGI_10005218; scaffold251 GLEAN mRNA 48382 65656 0.318507 - . ID=CGI_10005219; scaffold251 GLEAN promoter 65657 66656 0.318507 - . ID=CGI_10005219; scaffold251 GLEAN mRNA 68810 72316 0.999943 - . ID=CGI_10005220; scaffold251 TRF Tandem_Repeat 71860 71916 51 + . . scaffold251 GLEAN promoter 72317 73316 0.999943 - . ID=CGI_10005220; scaffold251 TRF Tandem_Repeat 74612 74650 78 + . . scaffold251 GLEAN mRNA 78543 84447 0.999999 - . ID=CGI_10005221; scaffold251 TRF Tandem_Repeat 83821 83869 62 + . . scaffold251 TRF Tandem_Repeat 83821 83856 54 + . . scaffold251 TRF Tandem_Repeat 83830 83869 53 + . . scaffold251 GLEAN promoter 84448 85447 0.999999 - . ID=CGI_10005221; scaffold251 TRF Tandem_Repeat 104576 104635 120 + . . scaffold251 GLEAN mRNA 105906 108952 0.904704 - . ID=CGI_10005222; scaffold251 WUBlastX DNA_TcMar-Tc1 106338 106679 81 - . . scaffold251 GLEAN promoter 108953 109952 0.904704 - . ID=CGI_10005222; scaffold252 GLEAN mRNA 187 8148 0.999996 - . ID=CGI_10010757; scaffold252 TRF Tandem_Repeat 633 1208 981 + . . scaffold252 GLEAN promoter 8149 9148 0.999996 - . ID=CGI_10010757; scaffold252 TRF Tandem_Repeat 10491 10560 140 + . . scaffold252 TRF Tandem_Repeat 11213 11274 115 + . . scaffold252 TRF Tandem_Repeat 14549 15387 845 + . . scaffold252 GLEAN mRNA 17489 37661 0.99477 - . ID=CGI_10010758; scaffold252 TRF Tandem_Repeat 29041 29222 337 + . . scaffold252 TRF Tandem_Repeat 33578 34105 713 + . . scaffold252 GLEAN promoter 37662 38661 0.99477 - . ID=CGI_10010758; scaffold252 GLEAN promoter 47300 48299 0.779573 + . ID=CGI_10010759; scaffold252 GLEAN mRNA 48300 75244 0.779573 + . ID=CGI_10010759; scaffold252 TRF Tandem_Repeat 52030 52344 217 + . . scaffold252 TRF Tandem_Repeat 52030 52189 178 + . . scaffold252 TRF Tandem_Repeat 52236 52430 133 + . . scaffold252 TRF Tandem_Repeat 55816 56698 1397 + . . scaffold252 TRF Tandem_Repeat 55858 56004 95 + . . scaffold252 TRF Tandem_Repeat 56102 56271 114 + . . scaffold252 TRF Tandem_Repeat 73099 73240 176 + . . scaffold252 TRF Tandem_Repeat 77356 77401 92 + . . scaffold252 GLEAN mRNA 78653 80897 0.991247 - . ID=CGI_10010760; scaffold252 GLEAN promoter 80898 81897 0.991247 - . ID=CGI_10010760; scaffold252 GLEAN promoter 81888 82887 0.995111 + . ID=CGI_10010761; scaffold252 GLEAN mRNA 82888 86207 0.995111 + . ID=CGI_10010761; scaffold252 GLEAN promoter 88598 89597 0.999676 + . ID=CGI_10010762; scaffold252 GLEAN mRNA 89598 102247 0.999676 + . ID=CGI_10010762; scaffold252 TRF Tandem_Repeat 92011 92078 68 + . . scaffold252 GLEAN mRNA 92702 92941 0.866433 - . ID=CGI_10010763; scaffold252 WUBlastX DNA_MuDR 92735 92965 33 - . . scaffold252 GLEAN promoter 92942 93941 0.866433 - . ID=CGI_10010763; scaffold252 WUBlastX DNA_MuDR 93123 93467 101 - . . scaffold252 WUBlastX DNA_MuDR 93225 93524 56 - . . scaffold252 GLEAN mRNA 103632 117351 0.999858 - . ID=CGI_10010764; scaffold252 TRF Tandem_Repeat 106392 106418 54 + . . scaffold252 GLEAN promoter 109760 110759 0.992559 + . ID=CGI_10010765; scaffold252 GLEAN mRNA 110760 112448 0.992559 + . ID=CGI_10010765; scaffold252 GLEAN promoter 117352 118351 0.999858 - . ID=CGI_10010764; scaffold252 TRF Tandem_Repeat 119516 119572 114 + . . scaffold252 TRF Tandem_Repeat 137584 137627 88 + . . scaffold252 TRF Tandem_Repeat 138427 138468 84 + . . scaffold252 TRF Tandem_Repeat 139755 139789 70 + . . scaffold252 TRF Tandem_Repeat 147151 147176 52 + . . scaffold252 TRF Tandem_Repeat 148228 148275 87 + . . scaffold252 TRF Tandem_Repeat 148837 149223 627 + . . scaffold252 GLEAN promoter 155927 156926 0.384535 + . ID=CGI_10010766; scaffold252 GLEAN mRNA 156927 158096 0.384535 + . ID=CGI_10010766; scaffold252 TRF Tandem_Repeat 162427 162482 112 + . . scaffold252 TRF Tandem_Repeat 169950 170005 60 + . . scaffold252 TRF Tandem_Repeat 171068 171144 154 + . . scaffold252 TRF Tandem_Repeat 173945 174023 158 + . . scaffold252 TRF Tandem_Repeat 176883 177265 152 + . . scaffold252 TRF Tandem_Repeat 178327 178575 231 + . . scaffold252 TRF Tandem_Repeat 178327 178575 198 + . . scaffold252 WUBlastX LTR_Ngaro 180564 180710 34 - . . scaffold252 WUBlastX LTR_Ngaro 181046 181177 28 - . . scaffold252 WUBlastX LTR_Ngaro 181141 181263 33 - . . scaffold252 WUBlastX LTR_Ngaro 181168 181263 44 - . . scaffold252 WUBlastX LTR_Ngaro 181260 181607 31 - . . scaffold252 WUBlastX LTR_Ngaro 181555 182163 125 - . . scaffold252 TRF Tandem_Repeat 182790 182925 146 + . . scaffold252 GLEAN promoter 184773 185772 0.978595 + . ID=CGI_10010767; scaffold252 WUBlastX LINE_RTE-X 184859 185146 76 + . . scaffold252 WUBlastX LINE_RTE-X 184862 185197 74 + . . scaffold252 WUBlastX LINE_RTE-X 184901 185275 63 + . . scaffold252 GLEAN mRNA 185773 186840 0.978595 + . ID=CGI_10010767; scaffold252 GLEAN mRNA 193535 212637 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LINE_L1-Tx1 194395 194766 93 + . . scaffold252 WUBlastX LINE_L1-Tx1 194729 195025 62 + . . scaffold252 WUBlastX LINE_L1 194729 194890 66 + . . scaffold252 WUBlastX LINE_L1-Tx1 195000 195257 75 + . . scaffold252 WUBlastX LINE_L1-Tx1 196213 196467 43 + . . scaffold252 WUBlastX LINE_L1-Tx1 196469 196741 44 + . . scaffold252 TRF Tandem_Repeat 196962 197007 92 + . . scaffold252 GLEAN promoter 212638 213637 0.650781 - . ID=CGI_10010768; scaffold252 WUBlastX LTR_Ngaro 213286 213498 77 - . . scaffold252 WUBlastX LTR_Ngaro 213286 213651 64 - . . scaffold252 WUBlastX LTR_Ngaro 213823 213993 27 - . . scaffold252 WUBlastX LTR_Ngaro 213975 214103 39 - . . scaffold252 GLEAN promoter 218375 219374 0.601918 + . ID=CGI_10010769; scaffold252 GLEAN mRNA 219375 219614 0.601918 + . ID=CGI_10010769; scaffold252 TRF Tandem_Repeat 221103 221141 78 + . . scaffold252 WUBlastX DNA_Kolobok-IS4 228072 228482 126 - . . scaffold252 GLEAN mRNA 228093 228335 1 - . ID=CGI_10010770; scaffold252 GLEAN promoter 228336 229335 1 - . ID=CGI_10010770; scaffold252 WUBlastX DNA_IS4EU 228692 228826 29 - . . scaffold252 WUBlastX DNA_IS4EU 229743 230003 60 - . . scaffold252 WUBlastX DNA_Kolobok-IS4 229776 230075 55 - . . scaffold252 WUBlastX LINE_CR1 248253 248360 51 - . . scaffold252 WUBlastX LINE_L2 251110 251646 319 - . . scaffold252 WUBlastX LINE_L2 251110 251748 281 - . . scaffold252 WUBlastX LINE_CR1-L2 252516 252608 21 - . . scaffold252 WUBlastX LINE_L2 252546 252623 21 - . . scaffold252 GLEAN promoter 257013 258012 0.973463 + . ID=CGI_10010771; scaffold252 GLEAN mRNA 258013 272471 0.973463 + . ID=CGI_10010771; scaffold252 WUBlastX LINE_L1-Tx1 271644 271751 42 - . . scaffold252 WUBlastX LINE_L1-Tx1 271892 272023 28 - . . scaffold25200 GLEAN mRNA 1569 2829 0.999998 - . ID=CGI_10000225; scaffold25200 GLEAN promoter 2830 3060 0.999998 - . ID=CGI_10000225; scaffold253 GLEAN mRNA 126 347 0.999068 - . ID=CGI_10003486; scaffold253 GLEAN promoter 348 1347 0.999068 - . ID=CGI_10003486; scaffold253 GLEAN promoter 1368 2367 0.999351 + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 1459 1764 35 - . . scaffold253 WUBlastX LTR_Gypsy 1516 1746 39 - . . scaffold253 WUBlastX LTR_Gypsy 1552 1794 101 - . . scaffold253 WUBlastX LTR_Gypsy 1805 2014 27 - . . scaffold253 GLEAN mRNA 2368 20050 0.999351 + . ID=CGI_10003487; scaffold253 WUBlastX LTR_Gypsy 2582 2698 20 - . . scaffold253 WUBlastX LTR_Gypsy 2602 2844 71 - . . scaffold253 WUBlastX LTR_Gypsy 2653 3465 118 - . . scaffold253 WUBlastX LTR_Gypsy 3342 3881 91 - . . scaffold253 WUBlastX LTR_Gypsy 3489 3971 20 - . . scaffold253 WUBlastX LINE_L2 9308 9682 97 - . . scaffold253 GLEAN promoter 22275 23274 1 + . ID=CGI_10003488; scaffold253 GLEAN mRNA 23275 23708 1 + . ID=CGI_10003488; scaffold253 GLEAN mRNA 25398 27725 0.558133 - . ID=CGI_10003489; scaffold253 GLEAN promoter 27726 28725 0.558133 - . ID=CGI_10003489; scaffold253 WUBlastX DNA_TcMar-Marin 29362 29607 57 + . . scaffold253 WUBlastX DNA_TcMar-Marin 29702 29860 23 + . . scaffold253 TRF Tandem_Repeat 31956 31985 53 + . . scaffold253 TRF Tandem_Repeat 36981 37013 50 + . . scaffold253 WUBlastX LINE_RTE-X 51208 51330 50 - . . scaffold253 TRF Tandem_Repeat 52294 52350 114 + . . scaffold253 TRF Tandem_Repeat 55574 56609 1666 + . . scaffold253 TRF Tandem_Repeat 56945 57005 122 + . . scaffold253 TRF Tandem_Repeat 60625 60908 302 + . . scaffold253 TRF Tandem_Repeat 61036 61085 91 + . . scaffold253 TRF Tandem_Repeat 62398 62430 57 + . . scaffold253 TRF Tandem_Repeat 62648 62679 64 + . . scaffold253 TRF Tandem_Repeat 65339 65365 54 + . . scaffold253 TRF Tandem_Repeat 71050 71133 96 + . . scaffold253 TRF Tandem_Repeat 73772 74531 997 + . . scaffold253 TRF Tandem_Repeat 73772 74531 968 + . . scaffold253 TRF Tandem_Repeat 73772 74531 1021 + . . scaffold254 GLEAN mRNA 15371 29346 0.999949 - . ID=CGI_10003063; scaffold254 GLEAN promoter 29347 30346 0.999949 - . ID=CGI_10003063; scaffold254 GLEAN promoter 52062 53061 1 + . ID=CGI_10003064; scaffold254 GLEAN mRNA 53062 60329 1 + . ID=CGI_10003064; scaffold255 GLEAN promoter 18492 19491 1 + . ID=CGI_10001627; scaffold255 GLEAN mRNA 19492 27581 1 + . ID=CGI_10001627; scaffold255 GLEAN mRNA 25378 27066 0.992502 - . ID=CGI_10001628; scaffold255 GLEAN promoter 27067 28066 0.992502 - . ID=CGI_10001628; scaffold25658 GLEAN promoter 1 701 0.999375 + . ID=CGI_10000253; scaffold25658 GLEAN mRNA 702 962 0.999375 + . ID=CGI_10000253; scaffold25658 GLEAN mRNA 3101 3286 0.999375 - . ID=CGI_10000254; scaffold25658 GLEAN promoter 3287 3356 0.999375 - . ID=CGI_10000254; scaffold25660 GLEAN mRNA 1110 3401 0.999415 - . ID=CGI_10000259; scaffold25660 GLEAN promoter 3402 3402 0.999415 - . ID=CGI_10000259; scaffold257 TRF Tandem_Repeat 4096 4120 50 + . . scaffold257 GLEAN mRNA 6343 23913 0.902878 - . ID=CGI_10027873; scaffold257 TRF Tandem_Repeat 8778 8872 57 + . . scaffold257 TRF Tandem_Repeat 8778 8827 64 + . . scaffold257 TRF Tandem_Repeat 9041 9085 60 + . . scaffold257 TRF Tandem_Repeat 9049 9084 54 + . . scaffold257 TRF Tandem_Repeat 19318 19360 52 + . . scaffold257 TRF Tandem_Repeat 19631 19663 59 + . . scaffold257 GLEAN promoter 23914 24913 0.902878 - . ID=CGI_10027873; scaffold257 WUBlastX LINE_L1-Tx1 27068 27232 46 - . . scaffold257 WUBlastX LINE_L1-Tx1 27125 27307 21 - . . scaffold257 WUBlastX LINE_L1 27131 27226 54 - . . scaffold257 WUBlastX LINE_L1-Tx1 27134 27262 49 - . . scaffold257 WUBlastX LINE_L1 27651 28067 34 - . . scaffold257 WUBlastX LINE_L1-Tx1 27765 28067 59 - . . scaffold257 WUBlastX LINE_L1 27981 28097 30 - . . scaffold257 WUBlastX LINE_L1-Tx1 28156 28407 53 - . . scaffold257 WUBlastX LINE_L1 28388 28597 51 - . . scaffold257 WUBlastX LINE_L1-Tx1 28624 28917 106 - . . scaffold257 TRF Tandem_Repeat 33527 33569 86 + . . scaffold257 TRF Tandem_Repeat 42494 42540 51 + . . scaffold257 TRF Tandem_Repeat 45793 45854 65 + . . scaffold257 GLEAN mRNA 51983 56017 0.542874 - . ID=CGI_10027874; scaffold257 GLEAN promoter 56018 57017 0.542874 - . ID=CGI_10027874; scaffold257 GLEAN promoter 57150 58149 0.999028 + . ID=CGI_10027875; scaffold257 GLEAN mRNA 58150 60894 0.999028 + . ID=CGI_10027875; scaffold257 GLEAN promoter 60204 61203 1 + . ID=CGI_10027876; scaffold257 GLEAN mRNA 61204 64648 1 + . ID=CGI_10027876; scaffold257 GLEAN promoter 65466 66465 0.999919 + . ID=CGI_10027877; scaffold257 GLEAN mRNA 66466 71796 0.999919 + . ID=CGI_10027877; scaffold257 GLEAN promoter 71775 72774 0.999676 + . ID=CGI_10027878; scaffold257 TRF Tandem_Repeat 72158 72202 90 + . . scaffold257 GLEAN mRNA 72775 78155 0.999676 + . ID=CGI_10027878; scaffold257 TRF Tandem_Repeat 79866 80694 860 + . . scaffold257 TRF Tandem_Repeat 83892 83978 61 + . . scaffold257 GLEAN promoter 83934 84933 0.851212 + . ID=CGI_10027879; scaffold257 TRF Tandem_Repeat 84056 84215 196 + . . scaffold257 TRF Tandem_Repeat 84242 84410 173 + . . scaffold257 GLEAN mRNA 84934 100975 0.851212 + . ID=CGI_10027879; scaffold257 TRF Tandem_Repeat 85544 85791 444 + . . scaffold257 TRF Tandem_Repeat 93418 93506 178 + . . scaffold257 GLEAN mRNA 101851 109887 1 - . ID=CGI_10027880; scaffold257 GLEAN promoter 108508 109507 1 + . ID=CGI_10027881; scaffold257 GLEAN mRNA 109508 111257 1 + . ID=CGI_10027881; scaffold257 GLEAN promoter 109888 110887 1 - . ID=CGI_10027880; scaffold257 TRF Tandem_Repeat 110196 110253 116 + . . scaffold257 GLEAN mRNA 114315 122705 1 - . ID=CGI_10027882; scaffold257 GLEAN promoter 122260 123259 0.997566 + . ID=CGI_10027883; scaffold257 GLEAN promoter 122706 123705 1 - . ID=CGI_10027882; scaffold257 GLEAN mRNA 123260 133784 0.997566 + . ID=CGI_10027883; scaffold257 TRF Tandem_Repeat 127370 127532 116 + . . scaffold257 TRF Tandem_Repeat 128597 128634 51 + . . scaffold257 TRF Tandem_Repeat 128804 129653 1529 + . . scaffold257 GLEAN mRNA 136211 140576 1 - . ID=CGI_10027884; scaffold257 GLEAN promoter 140577 141576 1 - . ID=CGI_10027884; scaffold257 GLEAN promoter 140889 141888 1 + . ID=CGI_10027885; scaffold257 TRF Tandem_Repeat 141618 141668 102 + . . scaffold257 TRF Tandem_Repeat 141666 141693 56 + . . scaffold257 GLEAN mRNA 141889 148973 1 + . ID=CGI_10027885; scaffold257 TRF Tandem_Repeat 147815 147863 98 + . . scaffold257 GLEAN mRNA 150700 151395 0.999984 - . ID=CGI_10027886; scaffold257 GLEAN promoter 151396 152395 0.999984 - . ID=CGI_10027886; scaffold257 GLEAN promoter 152741 153740 0.386444 + . ID=CGI_10027887; scaffold257 GLEAN mRNA 153741 161295 0.386444 + . ID=CGI_10027887; scaffold257 GLEAN mRNA 155055 156188 0.999984 - . ID=CGI_10027888; scaffold257 GLEAN promoter 156189 157188 0.999984 - . ID=CGI_10027888; scaffold257 TRF Tandem_Repeat 158205 158878 891 + . . scaffold257 GLEAN promoter 163778 164777 0.997617 + . ID=CGI_10027889; scaffold257 GLEAN mRNA 164778 167617 0.997617 + . ID=CGI_10027889; scaffold257 GLEAN promoter 169399 170398 0.998863 + . ID=CGI_10027890; scaffold257 GLEAN mRNA 170399 172115 0.998863 + . ID=CGI_10027890; scaffold257 GLEAN promoter 173708 174707 1 + . ID=CGI_10027891; scaffold257 GLEAN mRNA 174708 177540 1 + . ID=CGI_10027891; scaffold257 TRF Tandem_Repeat 174899 174935 74 + . . scaffold257 TRF Tandem_Repeat 180064 180858 1128 + . . scaffold257 GLEAN promoter 180886 181885 1 + . ID=CGI_10027892; scaffold257 GLEAN mRNA 181886 188288 1 + . ID=CGI_10027892; scaffold257 TRF Tandem_Repeat 185428 185486 118 + . . scaffold257 TRF Tandem_Repeat 188517 188577 122 + . . scaffold257 GLEAN promoter 188564 189563 1 + . ID=CGI_10027893; scaffold257 GLEAN mRNA 189564 198126 1 + . ID=CGI_10027893; scaffold257 TRF Tandem_Repeat 189679 189734 112 + . . scaffold257 TRF Tandem_Repeat 196310 196361 104 + . . scaffold257 TRF Tandem_Repeat 202397 202436 80 + . . scaffold257 TRF Tandem_Repeat 203072 203161 119 + . . scaffold257 TRF Tandem_Repeat 203305 203349 81 + . . scaffold257 TRF Tandem_Repeat 203916 204053 123 + . . scaffold257 GLEAN promoter 209167 210166 0.502333 + . ID=CGI_10027894; scaffold257 GLEAN mRNA 210167 210990 0.502333 + . ID=CGI_10027894; scaffold257 TRF Tandem_Repeat 211966 212047 157 + . . scaffold257 GLEAN mRNA 212098 212970 0.999661 - . ID=CGI_10027895; scaffold257 GLEAN promoter 212971 213970 0.999661 - . ID=CGI_10027895; scaffold257 TRF Tandem_Repeat 214967 215030 121 + . . scaffold257 GLEAN promoter 219695 220694 1 + . ID=CGI_10027896; scaffold257 GLEAN mRNA 220695 226506 1 + . ID=CGI_10027896; scaffold257 GLEAN promoter 226591 227590 0.654071 + . ID=CGI_10027897; scaffold257 GLEAN mRNA 227591 228691 0.654071 + . ID=CGI_10027897; scaffold257 TRF Tandem_Repeat 232777 232829 63 + . . scaffold257 TRF Tandem_Repeat 233422 233466 90 + . . scaffold257 GLEAN mRNA 233690 237348 1 - . ID=CGI_10027898; scaffold257 TRF Tandem_Repeat 235767 235896 107 + . . scaffold257 TRF Tandem_Repeat 237026 237057 64 + . . scaffold257 GLEAN promoter 237349 238348 1 - . ID=CGI_10027898; scaffold257 WUBlastX LINE_L2 238571 238855 84 + . . scaffold257 TRF Tandem_Repeat 240312 240345 50 + . . scaffold257 GLEAN mRNA 242221 242436 0.749266 - . ID=CGI_10027899; scaffold257 GLEAN promoter 242437 243436 0.749266 - . ID=CGI_10027899; scaffold257 WUBlastX DNA_TcMar-Tc1 246369 246434 21 + . . scaffold257 WUBlastX DNA_TcMar-Marin 247171 247491 27 + . . scaffold257 WUBlastX DNA_TcMar-Marin 247288 247494 65 + . . scaffold257 WUBlastX DNA_TcMar-Marin 247321 247500 80 + . . scaffold257 WUBlastX DNA_TcMar-Tc1 247366 247638 32 + . . scaffold257 GLEAN mRNA 247758 248568 0.531606 - . ID=CGI_10027900; scaffold257 GLEAN promoter 248569 249568 0.531606 - . ID=CGI_10027900; scaffold257 TRF Tandem_Repeat 251896 251954 109 + . . scaffold257 GLEAN mRNA 254661 259236 1 - . ID=CGI_10027901; scaffold257 GLEAN promoter 259237 260236 1 - . ID=CGI_10027901; scaffold257 GLEAN mRNA 261846 265372 1 - . ID=CGI_10027902; scaffold257 GLEAN promoter 265373 266372 1 - . ID=CGI_10027902; scaffold257 WUBlastX LINE_RTE-X 266592 267701 157 + . . scaffold257 WUBlastX LINE_RTE-X 266952 267713 221 + . . scaffold257 WUBlastX DNA_MuDR 271682 271984 74 - . . scaffold257 WUBlastX DNA_MuDR 271778 271984 81 - . . scaffold257 WUBlastX DNA_MuDR 271814 272854 383 - . . scaffold257 WUBlastX DNA_MuDR 272818 273057 41 - . . scaffold257 GLEAN promoter 274631 275630 1 + . ID=CGI_10027903; scaffold257 GLEAN mRNA 275631 277163 1 + . ID=CGI_10027903; scaffold257 GLEAN mRNA 279068 280279 0.999372 - . ID=CGI_10027904; scaffold257 GLEAN promoter 280280 281279 0.999372 - . ID=CGI_10027904; scaffold257 WUBlastX LTR_Pao 294755 294913 31 + . . scaffold257 WUBlastX LTR_Pao 294946 295029 20 + . . scaffold257 WUBlastX LTR_Pao 295119 295301 35 + . . scaffold257 GLEAN promoter 295791 296790 0.999997 + . ID=CGI_10027905; scaffold257 TRF Tandem_Repeat 295803 295863 95 + . . scaffold257 GLEAN mRNA 296791 299019 0.999997 + . ID=CGI_10027905; scaffold257 TRF Tandem_Repeat 299856 299994 152 + . . scaffold257 TRF Tandem_Repeat 299993 300195 158 + . . scaffold257 TRF Tandem_Repeat 300289 300375 131 + . . scaffold257 WUBlastX LTR_Gypsy 303128 304828 1131 + . . scaffold257 WUBlastX LTR_Gypsy 305236 305292 22 + . . scaffold257 GLEAN promoter 305483 306482 0.999073 + . ID=CGI_10027906; scaffold257 GLEAN mRNA 306483 324339 0.999073 + . ID=CGI_10027906; scaffold257 WUBlastX LINE_Penelope 311521 312660 114 - . . scaffold257 WUBlastX LINE_L1 317511 317990 149 + . . scaffold257 WUBlastX LINE_RTE-X 318027 318239 34 + . . scaffold257 WUBlastX LINE_RTE-X 318188 318502 145 + . . scaffold257 WUBlastX LINE_RTE-X 318558 319394 52 + . . scaffold257 WUBlastX LINE_RTE-X 319741 319836 25 + . . scaffold257 WUBlastX LINE_RTE-X 319759 319830 40 + . . scaffold257 WUBlastX LINE_RTE-X 319829 319942 73 + . . scaffold257 WUBlastX LINE_RTE-X 319829 319987 34 + . . scaffold257 TRF Tandem_Repeat 325505 325549 63 + . . scaffold257 TRF Tandem_Repeat 332175 332232 80 + . . scaffold257 TRF Tandem_Repeat 332175 332232 62 + . . scaffold257 TRF Tandem_Repeat 350752 350794 86 + . . scaffold257 TRF Tandem_Repeat 350928 350971 81 + . . scaffold257 WUBlastX DNA_Kolobok-IS4 350985 351623 111 - . . scaffold257 WUBlastX DNA_IS4EU 352082 352432 76 - . . scaffold257 WUBlastX DNA_TcMar-Tc1 361458 362234 325 - . . scaffold257 WUBlastX DNA_TcMar-Tc1 362239 362496 24 - . . scaffold257 WUBlastX DNA_TcMar-Tc1 362269 362484 79 - . . scaffold257 WUBlastX LINE_L1-Tx1 363433 363633 26 - . . scaffold257 WUBlastX LINE_L1-Tx1 363687 363962 73 - . . scaffold257 WUBlastX LINE_L1-Tx1 363720 364025 43 - . . scaffold257 WUBlastX LINE_L1-Tx1 364819 364971 52 - . . scaffold257 WUBlastX LINE_L1-Tx1 365117 365452 54 - . . scaffold257 WUBlastX LINE_L1-Tx1 365195 365473 118 - . . scaffold257 WUBlastX LINE_L1-Tx1 365446 366195 347 - . . scaffold257 WUBlastX LINE_L1-Tx1 366189 366299 62 - . . scaffold257 WUBlastX LINE_L1 366983 367477 113 - . . scaffold257 WUBlastX LINE_L1 366983 367588 104 - . . scaffold257 WUBlastX LINE_L1-Tx1 366983 367387 186 - . . scaffold257 WUBlastX DNA_TcMar-Marin 367575 367937 114 + . . scaffold257 WUBlastX DNA_TcMar-Marin 367653 367928 155 + . . scaffold257 WUBlastX DNA_TcMar-Marin 368970 369218 127 + . . scaffold257 WUBlastX DNA_TcMar-Marin 368994 369179 149 + . . scaffold257 WUBlastX DNA_TcMar-Marin 369226 369291 27 + . . scaffold257 WUBlastX DNA_TcMar-Marin 369241 369288 30 + . . scaffold257 GLEAN mRNA 371172 374191 0.992069 - . ID=CGI_10027907; scaffold257 GLEAN promoter 374192 375191 0.992069 - . ID=CGI_10027907; scaffold257 GLEAN promoter 385302 386301 1 + . ID=CGI_10027908; scaffold257 GLEAN mRNA 386302 396219 1 + . ID=CGI_10027908; scaffold257 TRF Tandem_Repeat 387043 387097 85 + . . scaffold257 TRF Tandem_Repeat 392549 392670 208 + . . scaffold257 TRF Tandem_Repeat 393736 393766 53 + . . scaffold257 GLEAN mRNA 404240 407933 0.983813 - . ID=CGI_10027909; scaffold257 TRF Tandem_Repeat 404505 404705 348 + . . scaffold257 GLEAN promoter 407934 408933 0.983813 - . ID=CGI_10027909; scaffold257 GLEAN mRNA 408517 430332 0.376756 - . ID=CGI_10027910; scaffold257 GLEAN promoter 414447 415446 0.479397 + . ID=CGI_10027911; scaffold257 GLEAN mRNA 415447 429822 0.479397 + . ID=CGI_10027911; scaffold257 TRF Tandem_Repeat 418827 418888 81 + . . scaffold257 WUBlastX LTR_DIRS 425745 426668 355 - . . scaffold257 WUBlastX LTR_DIRS 426563 428605 808 - . . scaffold257 WUBlastX LTR_DIRS 426908 428587 996 - . . scaffold257 WUBlastX LTR_Gypsy 428896 429039 26 - . . scaffold257 WUBlastX LTR_Gypsy 429373 429495 31 - . . scaffold257 GLEAN promoter 430333 431332 0.376756 - . ID=CGI_10027910; scaffold257 GLEAN promoter 430698 431697 0.991816 + . ID=CGI_10027912; scaffold257 GLEAN mRNA 431698 436524 0.991816 + . ID=CGI_10027912; scaffold257 GLEAN mRNA 440343 459518 0.628044 - . ID=CGI_10027913; scaffold257 GLEAN promoter 440692 441691 0.497734 + . ID=CGI_10027914; scaffold257 GLEAN mRNA 441692 459072 0.497734 + . ID=CGI_10027914; scaffold257 GLEAN promoter 459072 460071 0.999468 + . ID=CGI_10027915; scaffold257 GLEAN promoter 459519 460518 0.628044 - . ID=CGI_10027913; scaffold257 GLEAN mRNA 460072 472135 0.999468 + . ID=CGI_10027915; scaffold257 TRF Tandem_Repeat 470667 470694 56 + . . scaffold257 WUBlastX DNA_TcMar-Tc2 472720 472779 22 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 473684 474055 291 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 474059 474670 217 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 474272 474670 280 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 474554 475285 277 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 474887 475285 310 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 475898 476428 192 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 476057 476434 269 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 476432 477064 223 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 476645 477043 265 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 477875 478441 78 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 478067 478438 286 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 479348 479854 203 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 479462 479833 281 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 480488 480976 252 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 480599 481051 141 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 480599 480976 284 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 481157 481624 84 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 481310 481642 145 - . . scaffold257 WUBlastX DNA_TcMar-Tc2 481385 481714 137 - . . scaffold257 GLEAN mRNA 486250 488583 0.999676 - . ID=CGI_10027917; scaffold257 GLEAN promoter 488584 489583 0.999676 - . ID=CGI_10027917; scaffold257 TRF Tandem_Repeat 492343 492406 74 + . . scaffold257 TRF Tandem_Repeat 492346 492404 91 + . . scaffold257 TRF Tandem_Repeat 507859 507928 94 + . . scaffold257 TRF Tandem_Repeat 507867 507942 90 + . . scaffold257 TRF Tandem_Repeat 508067 509903 533 + . . scaffold257 TRF Tandem_Repeat 508406 509326 351 + . . scaffold257 TRF Tandem_Repeat 508406 509123 376 + . . scaffold257 TRF Tandem_Repeat 508406 509880 249 + . . scaffold257 TRF Tandem_Repeat 509355 509527 52 + . . scaffold257 TRF Tandem_Repeat 509473 509655 110 + . . scaffold257 TRF Tandem_Repeat 509574 509898 156 + . . scaffold257 GLEAN mRNA 512124 517779 1 - . ID=CGI_10027918; scaffold257 GLEAN promoter 517780 518779 1 - . ID=CGI_10027918; scaffold257 GLEAN promoter 518448 519447 0.499999 + . ID=CGI_10027919; scaffold257 GLEAN mRNA 519448 531869 0.499999 + . ID=CGI_10027919; scaffold257 GLEAN mRNA 524276 529142 0.956072 - . ID=CGI_10027920; scaffold257 GLEAN promoter 529143 530142 0.956072 - . ID=CGI_10027920; scaffold257 GLEAN mRNA 529983 539039 1 - . ID=CGI_10027921; scaffold257 GLEAN promoter 538139 539138 1 + . ID=CGI_10027922; scaffold257 GLEAN promoter 539040 540039 1 - . ID=CGI_10027921; scaffold257 GLEAN mRNA 539139 543211 1 + . ID=CGI_10027922; scaffold257 TRF Tandem_Repeat 541589 541628 62 + . . scaffold257 TRF Tandem_Repeat 541798 542689 864 + . . scaffold257 GLEAN mRNA 544331 550061 0.999674 - . ID=CGI_10027923; scaffold257 GLEAN promoter 550062 551061 0.999674 - . ID=CGI_10027923; scaffold257 TRF Tandem_Repeat 551600 551638 69 + . . scaffold257 TRF Tandem_Repeat 552119 552170 104 + . . scaffold257 TRF Tandem_Repeat 560413 560461 98 + . . scaffold257 TRF Tandem_Repeat 560957 561018 115 + . . scaffold257 GLEAN promoter 564512 565511 0.999949 + . ID=CGI_10027924; scaffold257 GLEAN mRNA 565512 583634 0.999949 + . ID=CGI_10027924; scaffold257 TRF Tandem_Repeat 566714 566765 104 + . . scaffold257 TRF Tandem_Repeat 572831 573062 225 + . . scaffold257 TRF Tandem_Repeat 572831 573062 232 + . . scaffold257 TRF Tandem_Repeat 573486 573677 79 + . . scaffold257 TRF Tandem_Repeat 581717 581756 80 + . . scaffold257 TRF Tandem_Repeat 582080 582387 351 + . . scaffold257 TRF Tandem_Repeat 582080 582387 441 + . . scaffold257 TRF Tandem_Repeat 582080 582387 425 + . . scaffold257 TRF Tandem_Repeat 592016 592064 98 + . . scaffold257 TRF Tandem_Repeat 592064 592105 66 + . . scaffold257 TRF Tandem_Repeat 593297 593365 138 + . . scaffold257 TRF Tandem_Repeat 595989 596028 80 + . . scaffold257 TRF Tandem_Repeat 597933 597959 54 + . . scaffold257 TRF Tandem_Repeat 597963 598108 278 + . . scaffold257 GLEAN promoter 610947 611946 1 + . ID=CGI_10027925; scaffold257 GLEAN mRNA 611947 623157 1 + . ID=CGI_10027925; scaffold257 TRF Tandem_Repeat 615085 615148 83 + . . scaffold257 TRF Tandem_Repeat 637899 637946 96 + . . scaffold257 GLEAN mRNA 649589 667743 0.992151 - . ID=CGI_10027926; scaffold257 GLEAN promoter 667744 668743 0.992151 - . ID=CGI_10027926; scaffold257 WUBlastX DNA_Academ 675029 675244 72 - . . scaffold257 TRF Tandem_Repeat 704391 704747 333 + . . scaffold257 TRF Tandem_Repeat 712794 712846 70 + . . scaffold257 TRF Tandem_Repeat 712795 712846 68 + . . scaffold257 TRF Tandem_Repeat 712811 712845 52 + . . scaffold257 TRF Tandem_Repeat 715365 715389 50 + . . scaffold257 TRF Tandem_Repeat 717551 717603 106 + . . scaffold257 TRF Tandem_Repeat 719548 719574 54 + . . scaffold257 WUBlastX LINE_RTE-X 720132 720542 54 - . . scaffold257 WUBlastX LINE_RTE-X 720198 720527 90 - . . scaffold257 WUBlastX LINE_RTE-X 720246 720518 115 - . . scaffold257 GLEAN promoter 720361 721360 0.55755 + . ID=CGI_10027927; scaffold257 GLEAN mRNA 721361 724369 0.55755 + . ID=CGI_10027927; scaffold257 TRF Tandem_Repeat 722978 723316 425 + . . scaffold257 TRF Tandem_Repeat 725799 726180 541 + . . scaffold257 TRF Tandem_Repeat 728117 728285 107 + . . scaffold257 TRF Tandem_Repeat 728160 728257 63 + . . scaffold257 TRF Tandem_Repeat 728172 728275 66 + . . scaffold257 TRF Tandem_Repeat 728354 728732 226 + . . scaffold257 TRF Tandem_Repeat 729823 730191 567 + . . scaffold257 TRF Tandem_Repeat 729982 730191 64 + . . scaffold257 TRF Tandem_Repeat 729982 730191 64 + . . scaffold257 GLEAN promoter 736032 737031 0.634611 + . ID=CGI_10027928; scaffold257 GLEAN mRNA 737032 739534 0.634611 + . ID=CGI_10027928; scaffold257 TRF Tandem_Repeat 738356 738403 96 + . . scaffold257 TRF Tandem_Repeat 744238 744277 64 + . . scaffold257 TRF Tandem_Repeat 747709 747738 60 + . . scaffold257 TRF Tandem_Repeat 752067 752781 1130 + . . scaffold257 TRF Tandem_Repeat 752948 752989 68 + . . scaffold257 TRF Tandem_Repeat 754916 754957 59 + . . scaffold257 GLEAN promoter 758266 759265 0.995993 + . ID=CGI_10027929; scaffold257 GLEAN mRNA 759266 761296 0.995993 + . ID=CGI_10027929; scaffold257 TRF Tandem_Repeat 763204 763349 71 + . . scaffold257 TRF Tandem_Repeat 763265 763413 95 + . . scaffold257 GLEAN promoter 765367 766366 1 + . ID=CGI_10027930; scaffold257 GLEAN mRNA 766367 766954 1 + . ID=CGI_10027930; scaffold257 TRF Tandem_Repeat 770385 770632 307 + . . scaffold257 WUBlastX DNA_Harbinger 775893 776291 172 + . . scaffold257 WUBlastX DNA_Harbinger 777386 778279 638 - . . scaffold257 TRF Tandem_Repeat 782653 783307 235 + . . scaffold257 TRF Tandem_Repeat 782671 782947 261 + . . scaffold257 TRF Tandem_Repeat 783391 783505 81 + . . scaffold257 TRF Tandem_Repeat 783611 783688 68 + . . scaffold257 TRF Tandem_Repeat 784019 784331 396 + . . scaffold257 GLEAN promoter 784990 785989 1 + . ID=CGI_10027931; scaffold257 GLEAN mRNA 785990 793917 1 + . ID=CGI_10027931; scaffold257 TRF Tandem_Repeat 790426 790490 130 + . . scaffold257 GLEAN mRNA 797000 800714 0.97596 - . ID=CGI_10027932; scaffold257 GLEAN promoter 800715 801714 0.97596 - . ID=CGI_10027932; scaffold257 GLEAN promoter 802460 803459 0.999628 + . ID=CGI_10027933; scaffold257 GLEAN mRNA 803460 817531 0.999628 + . ID=CGI_10027933; scaffold257 TRF Tandem_Repeat 817466 817517 104 + . . scaffold257 GLEAN promoter 826678 827677 1 + . ID=CGI_10027934; scaffold257 GLEAN mRNA 827678 834614 1 + . ID=CGI_10027934; scaffold257 TRF Tandem_Repeat 829487 829712 177 + . . scaffold257 GLEAN promoter 865071 866070 0.999974 + . ID=CGI_10027935; scaffold257 GLEAN mRNA 866071 866280 0.999974 + . ID=CGI_10027935; scaffold257 GLEAN mRNA 868416 874579 1 - . ID=CGI_10027936; scaffold257 TRF Tandem_Repeat 870856 871030 314 + . . scaffold257 GLEAN promoter 874580 875579 1 - . ID=CGI_10027936; scaffold257 WUBlastX LINE_L2 878238 878807 52 - . . scaffold257 WUBlastX LINE_L2 878241 878720 75 - . . scaffold257 WUBlastX LINE_L1 878271 878672 111 - . . scaffold257 TRF Tandem_Repeat 882350 882638 425 + . . scaffold257 TRF Tandem_Repeat 882350 882636 468 + . . scaffold257 WUBlastX DNA_NOF 898996 899109 29 + . . scaffold257 TRF Tandem_Repeat 902019 902220 289 + . . scaffold257 TRF Tandem_Repeat 902070 902237 97 + . . scaffold257 TRF Tandem_Repeat 902624 902932 339 + . . scaffold257 TRF Tandem_Repeat 912501 913051 806 + . . scaffold257 TRF Tandem_Repeat 919133 919220 149 + . . scaffold257 TRF Tandem_Repeat 929006 929258 326 + . . scaffold257 TRF Tandem_Repeat 932081 932110 51 + . . scaffold257 TRF Tandem_Repeat 936152 936188 74 + . . scaffold257 TRF Tandem_Repeat 936367 936420 108 + . . scaffold257 TRF Tandem_Repeat 937390 937450 52 + . . scaffold257 WUBlastX DNA_MuDR 939939 940109 46 + . . scaffold257 GLEAN promoter 942979 943978 0.983211 + . ID=CGI_10027937; scaffold257 GLEAN mRNA 943979 944839 0.983211 + . ID=CGI_10027937; scaffold257 TRF Tandem_Repeat 946265 946313 89 + . . scaffold257 TRF Tandem_Repeat 952121 952173 106 + . . scaffold257 TRF Tandem_Repeat 952663 952709 94 + . . scaffold257 WUBlastX LINE_RTE-X 953510 953815 44 - . . scaffold257 GLEAN mRNA 961691 967796 0.77615 - . ID=CGI_10027938; scaffold257 GLEAN promoter 967797 968796 0.77615 - . ID=CGI_10027938; scaffold257 WUBlastX LINE_RTE-X 973114 973656 27 + . . scaffold257 TRF Tandem_Repeat 983830 983875 65 + . . scaffold257 TRF Tandem_Repeat 994460 994505 92 + . . scaffold257 GLEAN mRNA 1000781 1023947 0.640889 - . ID=CGI_10027939; scaffold257 TRF Tandem_Repeat 1004784 1004829 76 + . . scaffold257 TRF Tandem_Repeat 1019721 1019810 108 + . . scaffold257 GLEAN promoter 1023948 1024947 0.640889 - . ID=CGI_10027939; scaffold257 TRF Tandem_Repeat 1036878 1037098 316 + . . scaffold257 WUBlastX LINE_Penelope 1038395 1038649 61 + . . scaffold257 WUBlastX LTR_Gypsy 1040930 1041166 107 + . . scaffold257 WUBlastX LTR_Gypsy 1040990 1041229 122 + . . scaffold257 WUBlastX LTR_Gypsy-Cigr 1040996 1041190 132 + . . scaffold257 WUBlastX LTR_Gypsy 1041407 1041997 78 + . . scaffold257 WUBlastX LTR_Gypsy 1041569 1042363 35 + . . scaffold257 WUBlastX LTR_Gypsy 1041750 1041911 107 + . . scaffold257 WUBlastX LTR_Gypsy 1041753 1042199 74 + . . scaffold257 TRF Tandem_Repeat 1044368 1045174 1125 + . . scaffold257 WUBlastX LTR_Ngaro 1067285 1067734 24 + . . scaffold257 WUBlastX LTR_Ngaro 1067396 1067749 163 + . . scaffold257 WUBlastX LTR_Ngaro 1067748 1068023 139 + . . scaffold257 WUBlastX LTR_Ngaro 1068017 1068898 336 + . . scaffold257 TRF Tandem_Repeat 1077960 1077996 74 + . . scaffold257 GLEAN promoter 1082994 1083993 0.992517 + . ID=CGI_10027940; scaffold257 GLEAN mRNA 1083994 1088590 0.992517 + . ID=CGI_10027940; scaffold257 TRF Tandem_Repeat 1089064 1089121 116 + . . scaffold257 TRF Tandem_Repeat 1092475 1092501 54 + . . scaffold257 GLEAN mRNA 1093944 1099430 0.999918 - . ID=CGI_10027941; scaffold257 WUBlastX LTR_Gypsy 1094420 1094485 21 - . . scaffold257 WUBlastX LTR_Copia 1094723 1094959 59 - . . scaffold257 WUBlastX LTR_Gypsy 1094933 1095085 50 - . . scaffold257 WUBlastX LTR_Gypsy-Cigr 1095030 1095104 25 - . . scaffold257 WUBlastX LTR_Gypsy 1095115 1097784 1400 - . . scaffold257 WUBlastX LTR_Gypsy 1095115 1097229 1527 - . . scaffold257 WUBlastX LTR_Gypsy 1097629 1097850 53 - . . scaffold257 WUBlastX LTR_Gypsy 1097829 1098452 44 - . . scaffold257 WUBlastX LTR_Copia 1097994 1098239 61 - . . scaffold257 WUBlastX LTR_Gypsy 1098111 1098782 150 - . . scaffold257 WUBlastX LTR_Gypsy-Cigr 1098261 1098950 144 - . . scaffold257 GLEAN promoter 1099431 1100430 0.999918 - . ID=CGI_10027941; scaffold257 TRF Tandem_Repeat 1103471 1103501 62 + . . scaffold257 TRF Tandem_Repeat 1123363 1123429 89 + . . scaffold257 TRF Tandem_Repeat 1123924 1123963 80 + . . scaffold257 TRF Tandem_Repeat 1123961 1123989 58 + . . scaffold257 TRF Tandem_Repeat 1124177 1124223 94 + . . scaffold257 TRF Tandem_Repeat 1126622 1126688 89 + . . scaffold257 TRF Tandem_Repeat 1152665 1152731 134 + . . scaffold257 WUBlastX LTR_DIRS 1153049 1153627 50 - . . scaffold257 WUBlastX LTR_DIRS 1153599 1153703 26 - . . scaffold257 WUBlastX LTR_DIRS 1153965 1154291 61 - . . scaffold257 WUBlastX LTR_DIRS 1154121 1154333 94 - . . scaffold257 WUBlastX LTR_DIRS 1156413 1157135 421 - . . scaffold257 WUBlastX LTR_DIRS 1157141 1157563 34 - . . scaffold257 WUBlastX LTR_DIRS 1157153 1157422 65 - . . scaffold257 WUBlastX LTR_Gypsy-Cigr 1158035 1158172 58 - . . scaffold257 WUBlastX LTR_Gypsy 1158179 1158424 56 - . . scaffold257 WUBlastX LTR_Gypsy 1158311 1158424 76 - . . scaffold257 WUBlastX LTR_Gypsy 1158439 1158756 84 - . . scaffold257 TRF Tandem_Repeat 1164818 1164846 58 + . . scaffold257 TRF Tandem_Repeat 1169477 1170223 770 + . . scaffold257 TRF Tandem_Repeat 1170542 1171344 1024 + . . scaffold257 TRF Tandem_Repeat 1178311 1178346 54 + . . scaffold257 TRF Tandem_Repeat 1178312 1178363 59 + . . scaffold257 WUBlastX LINE_Penelope 1189637 1189855 66 - . . scaffold257 TRF Tandem_Repeat 1194812 1194845 59 + . . scaffold257 TRF Tandem_Repeat 1198715 1199449 709 + . . scaffold257 GLEAN mRNA 1201973 1202592 0.999235 - . ID=CGI_10027942; scaffold257 GLEAN promoter 1202593 1203592 0.999235 - . ID=CGI_10027942; scaffold257 GLEAN promoter 1233107 1234106 0.950391 + . ID=CGI_10027943; scaffold257 GLEAN mRNA 1234107 1235469 0.950391 + . ID=CGI_10027943; scaffold257 WUBlastX DNA_MuDR 1259938 1260519 122 + . . scaffold257 WUBlastX DNA_MuDR 1260575 1260805 65 + . . scaffold257 WUBlastX DNA_MuDR 1260584 1261126 50 + . . scaffold257 TRF Tandem_Repeat 1265347 1265388 84 + . . scaffold257 TRF Tandem_Repeat 1266837 1266978 150 + . . scaffold257 TRF Tandem_Repeat 1272049 1272362 288 + . . scaffold257 TRF Tandem_Repeat 1272054 1272310 113 + . . scaffold257 TRF Tandem_Repeat 1275055 1275093 78 + . . scaffold257 WUBlastX DNA_En-Spm 1276634 1276861 60 - . . scaffold257 WUBlastX DNA_En-Spm 1276661 1276822 62 - . . scaffold257 WUBlastX DNA_En-Spm 1277381 1277533 28 - . . scaffold257 GLEAN promoter 1278438 1279437 0.660091 + . ID=CGI_10027946; scaffold257 GLEAN mRNA 1279438 1285224 0.660091 + . ID=CGI_10027946; scaffold257 TRF Tandem_Repeat 1286677 1286719 77 + . . scaffold257 TRF Tandem_Repeat 1287200 1287419 359 + . . scaffold257 GLEAN promoter 1293031 1294030 0.532165 + . ID=CGI_10027947; scaffold257 GLEAN mRNA 1294031 1313836 0.532165 + . ID=CGI_10027947; scaffold257 TRF Tandem_Repeat 1306931 1306965 54 + . . scaffold257 TRF Tandem_Repeat 1309075 1309125 70 + . . scaffold257 TRF Tandem_Repeat 1309466 1309512 78 + . . scaffold257 TRF Tandem_Repeat 1310161 1311175 969 + . . scaffold257 TRF Tandem_Repeat 1317490 1317521 64 + . . scaffold257 TRF Tandem_Repeat 1317610 1317649 53 + . . scaffold257 TRF Tandem_Repeat 1317647 1317718 110 + . . scaffold257 TRF Tandem_Repeat 1321826 1322003 71 + . . scaffold257 TRF Tandem_Repeat 1322846 1322877 64 + . . scaffold257 TRF Tandem_Repeat 1323192 1323232 82 + . . scaffold257 WUBlastX LTR_Gypsy 1323237 1323683 74 - . . scaffold257 WUBlastX LTR_Gypsy 1323686 1323904 33 - . . scaffold257 TRF Tandem_Repeat 1331324 1331375 79 + . . scaffold257 GLEAN promoter 1333713 1334712 0.57947 + . ID=CGI_10027948; scaffold257 GLEAN mRNA 1334713 1335951 0.57947 + . ID=CGI_10027948; scaffold257 TRF Tandem_Repeat 1340277 1342665 2959 + . . scaffold257 TRF Tandem_Repeat 1340515 1342665 2818 + . . scaffold257 TRF Tandem_Repeat 1343960 1345166 1823 + . . scaffold257 TRF Tandem_Repeat 1345331 1345377 51 + . . scaffold257 GLEAN mRNA 1346297 1349033 0.714296 - . ID=CGI_10027949; scaffold257 GLEAN promoter 1349034 1350033 0.714296 - . ID=CGI_10027949; scaffold257 GLEAN mRNA 1354587 1372128 0.999995 - . ID=CGI_10027950; scaffold257 TRF Tandem_Repeat 1355690 1355755 132 + . . scaffold257 TRF Tandem_Repeat 1362876 1363114 361 + . . scaffold257 TRF Tandem_Repeat 1365043 1365085 86 + . . scaffold257 TRF Tandem_Repeat 1367413 1367442 60 + . . scaffold257 TRF Tandem_Repeat 1369038 1369204 124 + . . scaffold257 GLEAN promoter 1372129 1373128 0.999995 - . ID=CGI_10027950; scaffold257 TRF Tandem_Repeat 1372674 1372718 90 + . . scaffold257 TRF Tandem_Repeat 1376615 1376646 55 + . . scaffold257 TRF Tandem_Repeat 1377505 1377568 128 + . . scaffold257 TRF Tandem_Repeat 1379879 1379923 54 + . . scaffold257 TRF Tandem_Repeat 1385639 1385982 265 + . . scaffold257 TRF Tandem_Repeat 1385639 1385860 168 + . . scaffold257 TRF Tandem_Repeat 1385741 1385985 168 + . . scaffold257 TRF Tandem_Repeat 1387111 1387780 948 + . . scaffold257 TRF Tandem_Repeat 1387111 1387780 948 + . . scaffold257 TRF Tandem_Repeat 1388330 1388774 647 + . . scaffold257 GLEAN promoter 1390949 1391948 0.391683 + . ID=CGI_10027951; scaffold257 GLEAN mRNA 1391949 1397779 0.391683 + . ID=CGI_10027951; scaffold257 TRF Tandem_Repeat 1394727 1395982 1698 + . . scaffold257 GLEAN promoter 1408061 1409060 0.821009 + . ID=CGI_10027952; scaffold257 GLEAN mRNA 1409061 1419726 0.821009 + . ID=CGI_10027952; scaffold257 TRF Tandem_Repeat 1412568 1412605 76 + . . scaffold257 GLEAN mRNA 1413055 1431926 1 - . ID=CGI_10027953; scaffold257 TRF Tandem_Repeat 1422850 1422979 242 + . . scaffold257 GLEAN promoter 1431927 1432926 1 - . ID=CGI_10027953; scaffold257 WUBlastX RC_Helitron 1434108 1434704 104 + . . scaffold257 WUBlastX RC_Helitron 1434288 1434725 106 + . . scaffold257 GLEAN mRNA 1437434 1442141 1 - . ID=CGI_10027954; scaffold257 TRF Tandem_Repeat 1440913 1440963 93 + . . scaffold257 GLEAN promoter 1441387 1442386 1 + . ID=CGI_10027955; scaffold257 GLEAN promoter 1442142 1443141 1 - . ID=CGI_10027954; scaffold257 GLEAN mRNA 1442387 1443941 1 + . ID=CGI_10027955; scaffold257 GLEAN mRNA 1447117 1451090 0.999186 - . ID=CGI_10027956; scaffold257 GLEAN promoter 1451091 1452090 0.999186 - . ID=CGI_10027956; scaffold257 GLEAN promoter 1452222 1453221 1 + . ID=CGI_10027957; scaffold257 GLEAN mRNA 1453222 1459236 1 + . ID=CGI_10027957; scaffold257 GLEAN mRNA 1454167 1456012 0.989551 - . ID=CGI_10027958; scaffold257 GLEAN promoter 1456013 1457012 0.989551 - . ID=CGI_10027958; scaffold257 GLEAN mRNA 1462267 1467759 1 - . ID=CGI_10027959; scaffold257 GLEAN promoter 1467760 1468759 1 - . ID=CGI_10027959; scaffold257 GLEAN promoter 1491757 1492756 0.999676 + . ID=CGI_10027960; scaffold257 GLEAN mRNA 1492757 1495192 0.999676 + . ID=CGI_10027960; scaffold257 GLEAN promoter 1507704 1508703 0.999997 + . ID=CGI_10027961; scaffold257 GLEAN mRNA 1508704 1513494 0.999997 + . ID=CGI_10027961; scaffold257 WUBlastX LTR_Ngaro 1518225 1519226 64 + . . scaffold257 WUBlastX LTR_Ngaro 1518351 1519049 199 + . . scaffold257 WUBlastX LTR_Ngaro 1518579 1519196 70 + . . scaffold257 WUBlastX LTR_Ngaro 1519300 1519650 228 + . . scaffold257 TRF Tandem_Repeat 1547583 1547766 313 + . . scaffold257 GLEAN promoter 1579814 1580813 0.275324 + . ID=CGI_10027962; scaffold257 GLEAN mRNA 1580814 1608982 0.275324 + . ID=CGI_10027962; scaffold257 WUBlastX DNA_TcMar-Marin 1599791 1599871 23 + . . scaffold257 WUBlastX DNA_TcMar-Marin 1600109 1600189 22 + . . scaffold257 WUBlastX DNA_TcMar-Marin 1600280 1600438 62 + . . scaffold257 WUBlastX DNA_TcMar-Marin 1600286 1600366 64 + . . scaffold257 WUBlastX LTR_DIRS 1604480 1604971 38 + . . scaffold257 WUBlastX LTR_DIRS 1604992 1605198 88 + . . scaffold257 WUBlastX LTR_DIRS 1604995 1605258 77 + . . scaffold257 WUBlastX LTR_DIRS 1605399 1605533 36 + . . scaffold257 WUBlastX LTR_DIRS 1605445 1605858 179 + . . scaffold257 WUBlastX LTR_DIRS 1605860 1606288 204 + . . scaffold257 WUBlastX LTR_DIRS 1606221 1606532 112 + . . scaffold257 WUBlastX LTR_Gypsy 1606452 1606601 35 + . . scaffold257 WUBlastX LTR_Gypsy 1606452 1606646 31 + . . scaffold257 WUBlastX LTR_DIRS 1607670 1607789 23 + . . scaffold257 WUBlastX LTR_DIRS 1607694 1607756 30 + . . scaffold257 WUBlastX LTR_DIRS 1607764 1607997 96 + . . scaffold257 WUBlastX LTR_DIRS 1607767 1608075 77 + . . scaffold257 WUBlastX LTR_DIRS 1608074 1608946 208 + . . scaffold257 WUBlastX LTR_DIRS 1609023 1609334 128 + . . scaffold257 TRF Tandem_Repeat 1611473 1611523 50 + . . scaffold257 TRF Tandem_Repeat 1611491 1611562 54 + . . scaffold258 GLEAN mRNA 1324 7372 0.999676 - . ID=CGI_10020035; scaffold258 GLEAN promoter 7373 8372 0.999676 - . ID=CGI_10020035; scaffold258 GLEAN promoter 9419 10418 0.989512 + . ID=CGI_10020036; scaffold258 GLEAN mRNA 10419 20843 0.989512 + . ID=CGI_10020036; scaffold258 TRF Tandem_Repeat 15603 15646 79 + . . scaffold258 GLEAN mRNA 27191 27520 1 - . ID=CGI_10020037; scaffold258 GLEAN promoter 27521 28520 1 - . ID=CGI_10020037; scaffold258 GLEAN mRNA 38171 42669 0.99795 - . ID=CGI_10020038; scaffold258 TRF Tandem_Repeat 41217 41265 89 + . . scaffold258 TRF Tandem_Repeat 41536 41592 105 + . . scaffold258 GLEAN promoter 42670 43669 0.99795 - . ID=CGI_10020038; scaffold258 TRF Tandem_Repeat 46910 46940 62 + . . scaffold258 GLEAN promoter 47599 48598 0.990718 + . ID=CGI_10020039; scaffold258 GLEAN mRNA 48599 65567 0.990718 + . ID=CGI_10020039; scaffold258 TRF Tandem_Repeat 74191 74255 114 + . . scaffold258 TRF Tandem_Repeat 90057 90367 400 + . . scaffold258 GLEAN promoter 94933 95932 0.706765 + . ID=CGI_10020040; scaffold258 GLEAN mRNA 95933 106398 0.706765 + . ID=CGI_10020040; scaffold258 TRF Tandem_Repeat 98007 98055 98 + . . scaffold258 TRF Tandem_Repeat 98643 98845 256 + . . scaffold258 GLEAN promoter 108290 109289 0.999984 + . ID=CGI_10020041; scaffold258 GLEAN mRNA 109290 111155 0.999984 + . ID=CGI_10020041; scaffold258 TRF Tandem_Repeat 113900 113934 70 + . . scaffold258 TRF Tandem_Repeat 114353 114377 50 + . . scaffold258 GLEAN promoter 116666 117665 0.999063 + . ID=CGI_10020042; scaffold258 GLEAN mRNA 117666 127931 0.999063 + . ID=CGI_10020042; scaffold258 TRF Tandem_Repeat 119654 119685 64 + . . scaffold258 TRF Tandem_Repeat 119685 119721 65 + . . scaffold258 TRF Tandem_Repeat 127050 127079 60 + . . scaffold258 GLEAN promoter 128819 129818 0.999649 + . ID=CGI_10020043; scaffold258 GLEAN mRNA 129819 139454 0.999649 + . ID=CGI_10020043; scaffold258 GLEAN mRNA 144330 148695 0.999999 - . ID=CGI_10020044; scaffold258 TRF Tandem_Repeat 146246 146288 86 + . . scaffold258 WUBlastX LTR_Gypsy 147702 148169 20 - . . scaffold258 GLEAN promoter 148696 149695 0.999999 - . ID=CGI_10020044; scaffold258 WUBlastX LTR_Gypsy 148943 149068 20 - . . scaffold258 TRF Tandem_Repeat 151238 151282 90 + . . scaffold258 GLEAN mRNA 151537 159402 0.998597 - . ID=CGI_10020045; scaffold258 WUBlastX LTR_Gypsy 154867 154968 35 - . . scaffold258 GLEAN promoter 159403 160402 0.998597 - . ID=CGI_10020045; scaffold258 TRF Tandem_Repeat 160049 160091 72 + . . scaffold258 TRF Tandem_Repeat 160480 160517 76 + . . scaffold258 GLEAN promoter 164853 165852 0.999612 + . ID=CGI_10020046; scaffold258 GLEAN mRNA 165853 168138 0.999612 + . ID=CGI_10020046; scaffold258 TRF Tandem_Repeat 169033 169068 63 + . . scaffold258 GLEAN mRNA 173430 183326 0.986683 - . ID=CGI_10020047; scaffold258 GLEAN promoter 180673 181672 1 + . ID=CGI_10020048; scaffold258 GLEAN mRNA 181673 189812 1 + . ID=CGI_10020048; scaffold258 GLEAN promoter 183327 184326 0.986683 - . ID=CGI_10020047; scaffold258 TRF Tandem_Repeat 184562 184629 136 + . . scaffold258 GLEAN promoter 190258 191257 0.999675 + . ID=CGI_10020049; scaffold258 GLEAN mRNA 191258 200875 0.999675 + . ID=CGI_10020049; scaffold258 TRF Tandem_Repeat 200542 200722 265 + . . scaffold258 TRF Tandem_Repeat 203299 204242 1322 + . . scaffold258 GLEAN mRNA 205962 234569 0.659899 - . ID=CGI_10020050; scaffold258 TRF Tandem_Repeat 208742 208799 107 + . . scaffold258 TRF Tandem_Repeat 225745 225784 80 + . . scaffold258 TRF Tandem_Repeat 230551 230608 116 + . . scaffold258 TRF Tandem_Repeat 233960 233998 78 + . . scaffold258 GLEAN promoter 234570 235569 0.659899 - . ID=CGI_10020050; scaffold258 GLEAN mRNA 237207 250486 0.927019 - . ID=CGI_10020051; scaffold258 TRF Tandem_Repeat 248367 248431 130 + . . scaffold258 TRF Tandem_Repeat 249854 249901 96 + . . scaffold258 TRF Tandem_Repeat 250081 250128 80 + . . scaffold258 GLEAN promoter 250487 251486 0.927019 - . ID=CGI_10020051; scaffold258 GLEAN promoter 252547 253546 1 + . ID=CGI_10020052; scaffold258 TRF Tandem_Repeat 252880 252923 79 + . . scaffold258 GLEAN mRNA 253547 265969 1 + . ID=CGI_10020052; scaffold258 TRF Tandem_Repeat 254066 254962 1355 + . . scaffold258 GLEAN mRNA 256703 257446 1 - . ID=CGI_10020053; scaffold258 GLEAN promoter 257447 258446 1 - . ID=CGI_10020053; scaffold258 TRF Tandem_Repeat 257980 258112 160 + . . scaffold258 TRF Tandem_Repeat 258169 258282 138 + . . scaffold258 TRF Tandem_Repeat 264798 264937 235 + . . scaffold258 GLEAN mRNA 267818 270064 0.99883 - . ID=CGI_10020054; scaffold258 GLEAN promoter 270065 271064 0.99883 - . ID=CGI_10020054; scaffold258 TRF Tandem_Repeat 270508 270554 94 + . . scaffold258 TRF Tandem_Repeat 276583 276679 134 + . . scaffold258 WUBlastX LINE_RTE-X 280085 280537 118 - . . scaffold258 WUBlastX LINE_RTE-X 280160 280543 134 - . . scaffold258 WUBlastX LINE_RTE-X 280196 280513 146 - . . scaffold258 WUBlastX LINE_RTE-X 280226 280489 152 - . . scaffold258 TRF Tandem_Repeat 282906 282940 52 + . . scaffold258 GLEAN promoter 283551 284550 0.585173 + . ID=CGI_10020055; scaffold258 GLEAN mRNA 284551 303188 0.585173 + . ID=CGI_10020055; scaffold258 TRF Tandem_Repeat 307332 307442 78 + . . scaffold258 GLEAN promoter 307405 308404 0.999697 + . ID=CGI_10020056; scaffold258 GLEAN mRNA 308405 308755 0.999697 + . ID=CGI_10020056; scaffold258 GLEAN promoter 315614 316613 1 + . ID=CGI_10020057; scaffold258 GLEAN mRNA 316614 320715 1 + . ID=CGI_10020057; scaffold258 WUBlastX LINE_CR1 318282 318710 263 + . . scaffold258 WUBlastX LINE_CR1-L2 318282 318827 75 + . . scaffold258 GLEAN promoter 328426 329425 1 + . ID=CGI_10020058; scaffold258 GLEAN mRNA 329426 331877 1 + . ID=CGI_10020058; scaffold258 TRF Tandem_Repeat 330446 330736 203 + . . scaffold258 TRF Tandem_Repeat 330446 330721 252 + . . scaffold258 TRF Tandem_Repeat 331300 331392 89 + . . scaffold258 TRF Tandem_Repeat 334324 334919 969 + . . scaffold258 GLEAN mRNA 337223 340659 1 - . ID=CGI_10020059; scaffold258 GLEAN promoter 340660 341659 1 - . ID=CGI_10020059; scaffold258 GLEAN promoter 341569 342568 0.889816 + . ID=CGI_10020060; scaffold258 GLEAN mRNA 342569 345592 0.889816 + . ID=CGI_10020060; scaffold258 TRF Tandem_Repeat 346902 346947 92 + . . scaffold258 GLEAN promoter 350651 351650 0.464818 + . ID=CGI_10020061; scaffold258 GLEAN mRNA 351651 366473 0.464818 + . ID=CGI_10020061; scaffold258 TRF Tandem_Repeat 371262 371750 723 + . . scaffold258 GLEAN promoter 377283 378282 0.531601 + . ID=CGI_10020062; scaffold258 GLEAN mRNA 378283 379950 0.531601 + . ID=CGI_10020062; scaffold258 TRF Tandem_Repeat 385445 386088 378 + . . scaffold258 TRF Tandem_Repeat 385546 386116 857 + . . scaffold258 TRF Tandem_Repeat 390181 390215 70 + . . scaffold258 GLEAN mRNA 403015 411862 0.997991 - . ID=CGI_10020063; scaffold258 TRF Tandem_Repeat 404843 404990 122 + . . scaffold258 GLEAN promoter 411051 412050 1 + . ID=CGI_10020064; scaffold258 GLEAN promoter 411863 412862 0.997991 - . ID=CGI_10020063; scaffold258 GLEAN mRNA 412051 414648 1 + . ID=CGI_10020064; scaffold258 TRF Tandem_Repeat 415628 415683 94 + . . scaffold258 TRF Tandem_Repeat 415835 415869 70 + . . scaffold258 TRF Tandem_Repeat 416929 417155 382 + . . scaffold258 TRF Tandem_Repeat 419707 419733 54 + . . scaffold258 TRF Tandem_Repeat 419744 419788 90 + . . scaffold258 GLEAN mRNA 422326 422490 1 - . ID=CGI_10020065; scaffold258 GLEAN promoter 422491 423490 1 - . ID=CGI_10020065; scaffold258 WUBlastX LINE_L2 426716 427474 176 - . . scaffold258 WUBlastX LINE_CR1-L2 426716 427345 395 - . . scaffold258 WUBlastX LINE_CR1 427338 427526 92 - . . scaffold258 TRF Tandem_Repeat 428761 428828 61 + . . scaffold258 WUBlastX LINE_L1-Tx1 428908 429357 48 + . . scaffold258 GLEAN promoter 439878 440877 0.82702 + . ID=CGI_10020066; scaffold258 GLEAN mRNA 440878 448267 0.82702 + . ID=CGI_10020066; scaffold258 TRF Tandem_Repeat 447894 447927 68 + . . scaffold258 GLEAN promoter 448500 449499 1 + . ID=CGI_10020067; scaffold258 TRF Tandem_Repeat 449176 449213 76 + . . scaffold258 GLEAN mRNA 449500 458358 1 + . ID=CGI_10020067; scaffold258 TRF Tandem_Repeat 450485 450522 51 + . . scaffold258 TRF Tandem_Repeat 453286 453351 132 + . . scaffold258 TRF Tandem_Repeat 456300 457027 913 + . . scaffold258 TRF Tandem_Repeat 456523 457027 617 + . . scaffold258 TRF Tandem_Repeat 457743 457794 104 + . . scaffold258 GLEAN mRNA 460048 461049 0.737299 - . ID=CGI_10020068; scaffold258 GLEAN promoter 461050 462049 0.737299 - . ID=CGI_10020068; scaffold258 TRF Tandem_Repeat 465525 465634 103 + . . scaffold258 GLEAN promoter 483422 484421 0.999656 + . ID=CGI_10020069; scaffold258 GLEAN mRNA 484422 489599 0.999656 + . ID=CGI_10020069; scaffold258 TRF Tandem_Repeat 487471 487509 78 + . . scaffold258 TRF Tandem_Repeat 493991 494047 105 + . . scaffold258 TRF Tandem_Repeat 498758 498811 108 + . . scaffold258 GLEAN promoter 500776 501775 0.776779 + . ID=CGI_10020070; scaffold258 GLEAN mRNA 501776 502150 0.776779 + . ID=CGI_10020070; scaffold258 GLEAN promoter 506900 507899 1 + . ID=CGI_10020071; scaffold258 GLEAN mRNA 507900 518761 1 + . ID=CGI_10020071; scaffold258 TRF Tandem_Repeat 508463 508522 120 + . . scaffold258 TRF Tandem_Repeat 508544 508599 89 + . . scaffold258 TRF Tandem_Repeat 508722 508772 57 + . . scaffold258 TRF Tandem_Repeat 510668 510755 74 + . . scaffold258 TRF Tandem_Repeat 510669 510715 60 + . . scaffold258 TRF Tandem_Repeat 510670 510754 52 + . . scaffold258 TRF Tandem_Repeat 513737 514704 1073 + . . scaffold258 TRF Tandem_Repeat 514998 515088 119 + . . scaffold258 GLEAN promoter 518257 519256 1 + . ID=CGI_10020072; scaffold258 GLEAN mRNA 519257 524794 1 + . ID=CGI_10020072; scaffold258 GLEAN mRNA 528512 532402 1 - . ID=CGI_10020073; scaffold258 GLEAN promoter 532403 533402 1 - . ID=CGI_10020073; scaffold258 GLEAN promoter 539142 540141 0.862836 + . ID=CGI_10020074; scaffold258 GLEAN mRNA 540142 564206 0.862836 + . ID=CGI_10020074; scaffold258 TRF Tandem_Repeat 540348 540421 130 + . . scaffold258 TRF Tandem_Repeat 547172 547224 106 + . . scaffold258 TRF Tandem_Repeat 554496 554770 433 + . . scaffold258 TRF Tandem_Repeat 555516 555602 167 + . . scaffold258 TRF Tandem_Repeat 560635 560669 61 + . . scaffold258 TRF Tandem_Repeat 563287 563314 56 + . . scaffold258 TRF Tandem_Repeat 563321 564055 1180 + . . scaffold258 TRF Tandem_Repeat 579748 579857 193 + . . scaffold258 TRF Tandem_Repeat 579748 579857 175 + . . scaffold258 TRF Tandem_Repeat 579921 579985 103 + . . scaffold258 TRF Tandem_Repeat 580790 580845 112 + . . scaffold258 TRF Tandem_Repeat 581610 581666 105 + . . scaffold258 TRF Tandem_Repeat 589194 589223 53 + . . scaffold258 WUBlastX LINE_CR1-L2 589568 589987 97 - . . scaffold258 WUBlastX LINE_L2 589709 589993 145 - . . scaffold258 WUBlastX LTR_Gypsy-Cigr 617241 617354 28 + . . scaffold258 WUBlastX LTR_Gypsy 617369 617500 65 + . . scaffold25910 WUBlastX LTR_Gypsy 133 501 39 - . . scaffold25910 WUBlastX LTR_Gypsy 316 501 40 - . . scaffold25910 GLEAN mRNA 1751 1945 0.999372 - . ID=CGI_10000270; scaffold25910 GLEAN promoter 1946 2945 0.999372 - . ID=CGI_10000270; scaffold26 GLEAN promoter 4905 5904 1 + . ID=CGI_10002293; scaffold26 GLEAN mRNA 5905 9706 1 + . ID=CGI_10002293; scaffold26 GLEAN promoter 9602 10601 1 + . ID=CGI_10002294; scaffold26 TRF Tandem_Repeat 10008 10046 78 + . . scaffold26 GLEAN mRNA 10602 13439 1 + . ID=CGI_10002294; scaffold26 TRF Tandem_Repeat 11903 12037 218 + . . scaffold26 GLEAN mRNA 15142 16758 1 - . ID=CGI_10002295; scaffold26 GLEAN promoter 16759 17758 1 - . ID=CGI_10002295; scaffold26 TRF Tandem_Repeat 19082 19127 58 + . . scaffold26 GLEAN mRNA 21764 23649 1 - . ID=CGI_10002296; scaffold26 GLEAN promoter 23650 24649 1 - . ID=CGI_10002296; scaffold26 TRF Tandem_Repeat 23970 24117 84 + . . scaffold26 TRF Tandem_Repeat 24026 24111 102 + . . scaffold26 TRF Tandem_Repeat 24080 24129 50 + . . scaffold26 TRF Tandem_Repeat 24203 24296 69 + . . scaffold26 TRF Tandem_Repeat 24211 24277 107 + . . scaffold26 GLEAN promoter 24483 25482 0.999993 + . ID=CGI_10002297; scaffold26 TRF Tandem_Repeat 24853 24881 58 + . . scaffold26 GLEAN mRNA 25483 26004 0.999993 + . ID=CGI_10002297; scaffold26 GLEAN promoter 36184 37183 0.783788 + . ID=CGI_10002298; scaffold26 GLEAN mRNA 37184 39443 0.783788 + . ID=CGI_10002298; scaffold26 WUBlastX LTR_Gypsy 38370 38705 150 - . . scaffold26 WUBlastX LTR_Gypsy 38442 38723 279 - . . scaffold26 WUBlastX LTR_Gypsy 38484 38774 67 - . . scaffold260 GLEAN promoter 1 350 1 + . ID=CGI_10003727; scaffold260 GLEAN mRNA 351 1938 1 + . ID=CGI_10003727; scaffold260 WUBlastX DNA_TcMar-Tc1 5098 5307 43 + . . scaffold260 TRF Tandem_Repeat 10732 10767 72 + . . scaffold260 GLEAN mRNA 14679 22931 0.848877 - . ID=CGI_10003728; scaffold260 GLEAN promoter 22932 23931 0.848877 - . ID=CGI_10003728; scaffold260 TRF Tandem_Repeat 24024 24496 470 + . . scaffold260 TRF Tandem_Repeat 24251 24535 111 + . . scaffold260 TRF Tandem_Repeat 25946 26011 132 + . . scaffold260 TRF Tandem_Repeat 26424 26489 132 + . . scaffold260 TRF Tandem_Repeat 28196 28244 98 + . . scaffold260 WUBlastX LINE_L2 32840 32923 27 + . . scaffold260 TRF Tandem_Repeat 33032 33087 58 + . . scaffold260 WUBlastX LINE_CR1 33161 33259 22 + . . scaffold260 WUBlastX LINE_L2 33291 33872 91 + . . scaffold260 WUBlastX LINE_RTE-X 33384 34934 436 + . . scaffold260 WUBlastX LINE_RTE-X 34936 35364 82 + . . scaffold260 GLEAN mRNA 48314 65715 0.848653 - . ID=CGI_10003729; scaffold260 WUBlastX DNA_Crypton 48994 49308 105 - . . scaffold260 TRF Tandem_Repeat 57148 57195 71 + . . scaffold260 WUBlastX LINE_L2 62597 62866 24 + . . scaffold260 WUBlastX LINE_L2 62702 62884 56 + . . scaffold260 WUBlastX LINE_L2 62732 62884 76 + . . scaffold260 WUBlastX LINE_L2 62759 62887 101 + . . scaffold260 GLEAN promoter 65716 66715 0.848653 - . ID=CGI_10003729; scaffold260 TRF Tandem_Repeat 71059 71111 97 + . . scaffold260 WUBlastX LINE_RTE-X 72559 72834 71 + . . scaffold260 WUBlastX LINE_RTE-X 72664 72834 78 + . . scaffold260 WUBlastX LINE_L1-Tx1 78455 78658 58 - . . scaffold260 WUBlastX LTR_DIRS 78816 79055 52 - . . scaffold260 WUBlastX LTR_DIRS 79950 80015 22 - . . scaffold260 WUBlastX LTR_DIRS 80071 80163 39 - . . scaffold26074 GLEAN mRNA 432 1124 1 - . ID=CGI_10000279; scaffold26074 GLEAN promoter 1125 2124 1 - . ID=CGI_10000279; scaffold261 TRF Tandem_Repeat 12 218 360 + . . scaffold261 WUBlastX LINE_RTE-BovB 4859 4987 56 - . . scaffold261 WUBlastX LINE_RTE-BovB 4868 5023 52 - . . scaffold261 GLEAN promoter 6498 7497 0.999989 + . ID=CGI_10001055; scaffold261 GLEAN mRNA 7498 8493 0.999989 + . ID=CGI_10001055; scaffold261 WUBlastX DNA_Harbinger 11894 12022 32 + . . scaffold261 WUBlastX DNA_Harbinger 11976 12251 63 + . . scaffold261 WUBlastX DNA_Harbinger 12250 12852 309 + . . scaffold261 WUBlastX DNA_Harbinger 12250 12744 365 + . . scaffold26176 GLEAN promoter 1 542 1 + . ID=CGI_10000285; scaffold26176 GLEAN mRNA 543 2698 1 + . ID=CGI_10000285; scaffold262 TRF Tandem_Repeat 487 511 50 + . . scaffold262 GLEAN promoter 3005 4004 0.999673 + . ID=CGI_10001665; scaffold262 GLEAN mRNA 4005 16158 0.999673 + . ID=CGI_10001665; scaffold262 TRF Tandem_Repeat 17545 17667 81 + . . scaffold262 WUBlastX LTR_Gypsy 18595 18939 69 + . . scaffold262 WUBlastX LTR_Gypsy 18598 18807 87 + . . scaffold262 WUBlastX LINE_RTE-X 19379 20752 260 - . . scaffold262 WUBlastX LINE_L2 20758 23421 1488 + . . scaffold262 WUBlastX LINE_CR1-L2 23651 23773 65 - . . scaffold262 WUBlastX LINE_L2 23784 24797 407 - . . scaffold262 WUBlastX LINE_CR1-L2 24312 24884 135 - . . scaffold262 WUBlastX LINE_CR1-L2 24952 24999 30 - . . scaffold262 GLEAN mRNA 27047 29094 0.584962 - . ID=CGI_10001666; scaffold262 GLEAN promoter 29095 29110 0.584962 - . ID=CGI_10001666; scaffold264 TRF Tandem_Repeat 9927 9967 82 + . . scaffold264 TRF Tandem_Repeat 10295 10353 118 + . . scaffold264 GLEAN promoter 16560 17559 1 + . ID=CGI_10003461; scaffold264 GLEAN mRNA 17560 25751 1 + . ID=CGI_10003461; scaffold264 TRF Tandem_Repeat 30076 30238 161 + . . scaffold264 TRF Tandem_Repeat 35897 35943 94 + . . scaffold264 TRF Tandem_Repeat 37361 37441 162 + . . scaffold264 GLEAN mRNA 48420 55125 1 - . ID=CGI_10003462; scaffold264 GLEAN promoter 54806 55805 0.919425 + . ID=CGI_10003463; scaffold264 GLEAN promoter 55126 56125 1 - . ID=CGI_10003462; scaffold264 GLEAN mRNA 55806 65386 0.919425 + . ID=CGI_10003463; scaffold264 WUBlastX LTR_Gypsy 63160 63261 23 + . . scaffold264 WUBlastX LTR_ERV1 63606 64226 74 + . . scaffold264 WUBlastX LTR_Gypsy 63714 64409 225 + . . scaffold264 WUBlastX LTR_Gypsy-Cigr 63882 64430 303 + . . scaffold265 TRF Tandem_Repeat 9227 9254 56 + . . scaffold265 WUBlastX LINE_L1-Tx1 13690 13887 27 - . . scaffold265 GLEAN promoter 15315 16314 0.437327 + . ID=CGI_10003427; scaffold265 GLEAN mRNA 16315 16605 0.437327 + . ID=CGI_10003427; scaffold265 TRF Tandem_Repeat 18674 18796 106 + . . scaffold265 TRF Tandem_Repeat 20786 20821 54 + . . scaffold265 GLEAN promoter 20990 21989 0.853024 + . ID=CGI_10003428; scaffold265 GLEAN mRNA 21990 22280 0.853024 + . ID=CGI_10003428; scaffold265 WUBlastX LTR_Pao 22274 23017 256 + . . scaffold265 WUBlastX LTR_Pao 22442 24559 958 + . . scaffold265 WUBlastX LTR_Pao 24383 24664 98 + . . scaffold265 WUBlastX LTR_Pao 24658 26841 1851 + . . scaffold265 WUBlastX LTR_Ngaro 31784 31888 49 - . . scaffold265 WUBlastX LTR_Ngaro 31888 32388 109 - . . scaffold265 WUBlastX LTR_Ngaro 32354 32701 104 - . . scaffold265 WUBlastX LTR_Ngaro 32674 33090 283 - . . scaffold265 TRF Tandem_Repeat 33618 33671 72 + . . scaffold265 TRF Tandem_Repeat 51327 51418 170 + . . scaffold265 TRF Tandem_Repeat 56935 56999 130 + . . scaffold265 TRF Tandem_Repeat 61777 61839 110 + . . scaffold265 GLEAN mRNA 64182 72514 0.643455 - . ID=CGI_10003429; scaffold265 WUBlastX LTR_Ngaro 66239 67180 336 - . . scaffold265 WUBlastX LTR_Ngaro 67147 68214 648 - . . scaffold265 WUBlastX LTR_Ngaro 68521 69009 321 - . . scaffold265 WUBlastX LTR_Ngaro 68524 69108 164 - . . scaffold265 WUBlastX LTR_Ngaro 69374 70069 143 - . . scaffold265 WUBlastX LTR_Ngaro 69374 69778 151 - . . scaffold265 TRF Tandem_Repeat 71751 71792 84 + . . scaffold265 GLEAN promoter 72515 73302 0.643455 - . ID=CGI_10003429; scaffold26586 GLEAN mRNA 132 2015 0.998504 - . ID=CGI_10000315; scaffold26586 GLEAN promoter 2016 3015 0.998504 - . ID=CGI_10000315; scaffold266 TRF Tandem_Repeat 4991 5037 85 + . . scaffold266 GLEAN mRNA 8446 13085 0.992345 - . ID=CGI_10013345; scaffold266 WUBlastX DNA_hAT 8800 9339 62 - . . scaffold266 GLEAN promoter 13086 14085 0.992345 - . ID=CGI_10013345; scaffold266 TRF Tandem_Repeat 15864 15912 98 + . . scaffold266 TRF Tandem_Repeat 17842 18243 795 + . . scaffold266 GLEAN mRNA 46310 60131 0.998446 - . ID=CGI_10013346; scaffold266 WUBlastX DNA_hAT-Tip100 54621 54842 132 + . . scaffold266 WUBlastX DNA_hAT-Tip100 54669 54896 51 + . . scaffold266 GLEAN promoter 60132 61131 0.998446 - . ID=CGI_10013346; scaffold266 GLEAN promoter 61458 62457 1 + . ID=CGI_10013347; scaffold266 GLEAN mRNA 62458 65913 1 + . ID=CGI_10013347; scaffold266 TRF Tandem_Repeat 87187 87229 77 + . . scaffold266 GLEAN promoter 87266 88265 0.518698 + . ID=CGI_10013348; scaffold266 GLEAN mRNA 88266 107775 0.518698 + . ID=CGI_10013348; scaffold266 TRF Tandem_Repeat 100696 101668 770 + . . scaffold266 TRF Tandem_Repeat 100702 101733 1049 + . . scaffold266 TRF Tandem_Repeat 100702 101733 899 + . . scaffold266 GLEAN mRNA 109461 125312 0.993907 - . ID=CGI_10013349; scaffold266 TRF Tandem_Repeat 111396 113416 3205 + . . scaffold266 TRF Tandem_Repeat 115055 115386 258 + . . scaffold266 TRF Tandem_Repeat 115085 115387 219 + . . scaffold266 GLEAN promoter 125313 126312 0.993907 - . ID=CGI_10013349; scaffold266 WUBlastX LINE_RTE-X 129872 130093 36 - . . scaffold266 WUBlastX LINE_RTE-X 129905 130075 73 - . . scaffold266 GLEAN promoter 132020 133019 0.780625 + . ID=CGI_10013350; scaffold266 GLEAN mRNA 133020 149958 0.780625 + . ID=CGI_10013350; scaffold266 TRF Tandem_Repeat 138635 138972 642 + . . scaffold266 TRF Tandem_Repeat 139387 139505 91 + . . scaffold266 TRF Tandem_Repeat 139548 139670 124 + . . scaffold266 TRF Tandem_Repeat 140740 140903 265 + . . scaffold266 TRF Tandem_Repeat 144194 144669 404 + . . scaffold266 TRF Tandem_Repeat 146278 146317 62 + . . scaffold266 TRF Tandem_Repeat 146804 146855 50 + . . scaffold266 TRF Tandem_Repeat 152234 152519 486 + . . scaffold266 WUBlastX LTR_Gypsy 153082 154782 743 - . . scaffold266 TRF Tandem_Repeat 180083 180744 663 + . . scaffold266 TRF Tandem_Repeat 180083 180888 655 + . . scaffold266 WUBlastX LINE_L2 181629 181817 28 - . . scaffold266 WUBlastX LINE_L2 181701 181850 34 - . . scaffold266 WUBlastX LINE_L2 181701 181817 44 - . . scaffold266 WUBlastX LINE_L2 181841 182116 45 - . . scaffold266 WUBlastX LINE_L2 181913 182167 41 - . . scaffold266 WUBlastX LINE_L2 181919 182113 77 - . . scaffold266 WUBlastX LINE_L2 181943 182104 85 - . . scaffold266 WUBlastX LINE_L2 183004 183165 30 - . . scaffold266 WUBlastX LINE_RTE-X 189289 189609 79 - . . scaffold266 WUBlastX LINE_RTE-X 189581 190447 433 - . . scaffold266 WUBlastX LINE_L2 190410 191393 71 - . . scaffold266 WUBlastX LINE_RTE-X 190410 191237 295 - . . scaffold266 TRF Tandem_Repeat 193177 193261 170 + . . scaffold266 TRF Tandem_Repeat 194180 194320 113 + . . scaffold266 TRF Tandem_Repeat 196187 196240 99 + . . scaffold266 TRF Tandem_Repeat 208566 208608 70 + . . scaffold266 TRF Tandem_Repeat 208578 208619 57 + . . scaffold266 TRF Tandem_Repeat 216864 216967 120 + . . scaffold266 WUBlastX LTR_Gypsy 220105 220668 78 - . . scaffold266 WUBlastX LTR_Gypsy 220153 220770 77 - . . scaffold266 WUBlastX LTR_Gypsy 220159 220632 177 - . . scaffold266 WUBlastX DNA_Zator 220710 220871 73 + . . scaffold266 WUBlastX DNA_Zator 220944 221258 56 + . . scaffold266 GLEAN promoter 228226 229225 0.99923 + . ID=CGI_10013352; scaffold266 GLEAN mRNA 229226 229555 0.99923 + . ID=CGI_10013352; scaffold266 GLEAN promoter 230009 231008 0.618059 + . ID=CGI_10013353; scaffold266 GLEAN mRNA 231009 231179 0.618059 + . ID=CGI_10013353; scaffold266 GLEAN mRNA 236180 236371 0.999372 - . ID=CGI_10013354; scaffold266 GLEAN promoter 236372 237371 0.999372 - . ID=CGI_10013354; scaffold266 GLEAN mRNA 236877 257451 0.649405 - . ID=CGI_10013355; scaffold266 TRF Tandem_Repeat 237494 237533 80 + . . scaffold266 TRF Tandem_Repeat 240616 240650 70 + . . scaffold266 WUBlastX LINE_RTE-X 245952 246284 96 - . . scaffold266 WUBlastX LINE_RTE-X 245955 246347 84 - . . scaffold266 WUBlastX LINE_RTE-X 246066 246425 37 - . . scaffold266 GLEAN promoter 257452 258451 0.649405 - . ID=CGI_10013355; scaffold266 TRF Tandem_Repeat 263416 263982 448 + . . scaffold266 TRF Tandem_Repeat 263433 263977 669 + . . scaffold266 WUBlastX DNA_Harbinger 264391 264639 54 + . . scaffold266 WUBlastX DNA_Harbinger 264436 264678 70 + . . scaffold266 WUBlastX DNA_Harbinger 264448 264639 78 + . . scaffold266 WUBlastX LINE_L2 267877 271101 1442 + . . scaffold266 WUBlastX LTR_Gypsy 276374 277573 39 - . . scaffold266 WUBlastX LTR_Gypsy 277873 278070 64 - . . scaffold266 WUBlastX LTR_Gypsy 277918 279519 629 - . . scaffold266 WUBlastX LTR_Gypsy 278188 280542 1018 - . . scaffold266 WUBlastX LTR_Gypsy 280478 280576 24 - . . scaffold266 WUBlastX LTR_Gypsy 280580 280660 21 - . . scaffold266 WUBlastX LTR_Gypsy 280610 280651 21 - . . scaffold266 WUBlastX LTR_Gypsy 281145 282059 134 - . . scaffold266 WUBlastX LTR_Gypsy 281283 281888 311 - . . scaffold266 WUBlastX LTR_Gypsy 281409 282695 438 - . . scaffold266 WUBlastX LTR_Gypsy 281409 282935 201 - . . scaffold266 WUBlastX LTR_Gypsy 282405 283628 60 - . . scaffold266 WUBlastX LTR_Gypsy 283182 283496 66 - . . scaffold266 GLEAN mRNA 283648 284226 0.933205 - . ID=CGI_10013356; scaffold266 GLEAN promoter 284227 285226 0.933205 - . ID=CGI_10013356; scaffold266 WUBlastX LTR_Gypsy 287060 287212 28 - . . scaffold266 WUBlastX LTR_Gypsy 287190 287399 96 - . . scaffold266 WUBlastX LTR_Gypsy 287912 288838 274 - . . scaffold266 WUBlastX LTR_Gypsy 288053 288901 629 - . . scaffold266 WUBlastX LTR_Gypsy 288062 289141 445 - . . scaffold266 WUBlastX LTR_Gypsy 289100 289174 21 - . . scaffold266 WUBlastX LTR_Gypsy 289103 289162 23 - . . scaffold266 WUBlastX LTR_Gypsy 289743 289874 27 - . . scaffold266 WUBlastX DNA_NOF 290648 290812 47 - . . scaffold266 TRF Tandem_Repeat 294151 294207 51 + . . scaffold266 TRF Tandem_Repeat 297607 297650 88 + . . scaffold266 WUBlastX RC_Helitron 299278 299412 49 - . . scaffold266 WUBlastX DNA_Maverick 325584 326003 141 - . . scaffold266 WUBlastX DNA_Maverick 325656 326156 221 - . . scaffold266 WUBlastX DNA_Maverick 327560 328099 268 - . . scaffold266 WUBlastX DNA_Maverick 328276 328719 93 - . . scaffold266 WUBlastX DNA_Maverick 328763 329326 316 - . . scaffold266 WUBlastX DNA_Maverick 329326 330078 347 - . . scaffold266 WUBlastX DNA_Maverick 330501 330737 49 - . . scaffold266 WUBlastX DNA_Maverick 330510 330797 46 - . . scaffold266 WUBlastX DNA_Maverick 330819 330941 40 - . . scaffold266 WUBlastX DNA_Maverick 330956 331159 120 - . . scaffold266 WUBlastX DNA_Maverick 331048 331740 141 - . . scaffold266 WUBlastX DNA_Maverick 331060 331638 169 - . . scaffold266 WUBlastX DNA_Maverick 331129 331590 189 - . . scaffold266 WUBlastX DNA_Maverick 332567 333082 88 - . . scaffold266 WUBlastX DNA_Maverick 332858 333082 141 - . . scaffold266 WUBlastX DNA_Maverick 332867 333280 92 - . . scaffold266 TRF Tandem_Repeat 335661 335714 65 + . . scaffold266 TRF Tandem_Repeat 335662 335716 51 + . . scaffold266 WUBlastX RC_Helitron 343759 345078 339 + . . scaffold266 TRF Tandem_Repeat 345786 345835 91 + . . scaffold266 WUBlastX LTR_DIRS 346058 346156 28 - . . scaffold266 WUBlastX LTR_DIRS 346079 346174 23 - . . scaffold266 WUBlastX LTR_DIRS 346436 346669 67 - . . scaffold266 WUBlastX LTR_DIRS 346630 346716 32 - . . scaffold266 WUBlastX LTR_DIRS 346735 347559 173 - . . scaffold266 WUBlastX LTR_DIRS 347209 348327 226 - . . scaffold266 WUBlastX LTR_DIRS 348368 348778 129 - . . scaffold266 TRF Tandem_Repeat 351576 351635 52 + . . scaffold267 GLEAN mRNA 4465 8137 0.999999 - . ID=CGI_10018282; scaffold267 TRF Tandem_Repeat 5631 5678 96 + . . scaffold267 GLEAN promoter 8138 9137 0.999999 - . ID=CGI_10018282; scaffold267 TRF Tandem_Repeat 13597 13635 78 + . . scaffold267 TRF Tandem_Repeat 17456 17561 88 + . . scaffold267 TRF Tandem_Repeat 28528 29395 1253 + . . scaffold267 TRF Tandem_Repeat 36767 36824 98 + . . scaffold267 WUBlastX DNA_TcMar-Tc1 37998 38270 55 - . . scaffold267 WUBlastX LINE_CR1 38178 38456 46 - . . scaffold267 WUBlastX LINE_CR1 38420 39811 404 - . . scaffold267 WUBlastX LINE_CR1 38438 39562 526 - . . scaffold267 WUBlastX LINE_CR1 39572 39976 104 - . . scaffold267 WUBlastX LINE_CR1 39937 40134 31 - . . scaffold267 TRF Tandem_Repeat 46528 46602 123 + . . scaffold267 GLEAN mRNA 62235 68636 0.883587 - . ID=CGI_10018283; scaffold267 TRF Tandem_Repeat 66121 66162 84 + . . scaffold267 GLEAN promoter 68637 69636 0.883587 - . ID=CGI_10018283; scaffold267 WUBlastX DNA_TcMar-Marin 72245 72853 260 + . . scaffold267 WUBlastX DNA_TcMar-Marin 72989 73441 214 + . . scaffold267 GLEAN mRNA 78386 85180 0.840354 - . ID=CGI_10018284; scaffold267 TRF Tandem_Repeat 84171 84207 74 + . . scaffold267 GLEAN promoter 85181 86180 0.840354 - . ID=CGI_10018284; scaffold267 GLEAN mRNA 90014 96204 0.998586 - . ID=CGI_10018285; scaffold267 TRF Tandem_Repeat 90670 90708 60 + . . scaffold267 WUBlastX DNA_Harbinger 93781 94764 336 + . . scaffold267 WUBlastX DNA_Harbinger 94552 94836 26 + . . scaffold267 GLEAN promoter 96205 97204 0.998586 - . ID=CGI_10018285; scaffold267 GLEAN promoter 97565 98564 0.999998 + . ID=CGI_10018286; scaffold267 GLEAN mRNA 98565 99709 0.999998 + . ID=CGI_10018286; scaffold267 TRF Tandem_Repeat 100026 101163 1904 + . . scaffold267 TRF Tandem_Repeat 101172 101223 86 + . . scaffold267 TRF Tandem_Repeat 101172 101227 58 + . . scaffold267 WUBlastX DNA_Maverick 101997 102464 92 + . . scaffold267 WUBlastX DNA_Maverick 102228 103112 61 + . . scaffold267 WUBlastX DNA_Maverick 102579 103082 213 + . . scaffold267 WUBlastX DNA_Maverick 103105 103419 85 + . . scaffold267 WUBlastX DNA_Maverick 103159 103425 96 + . . scaffold267 WUBlastX DNA_Maverick 103213 103368 154 + . . scaffold267 WUBlastX DNA_Maverick 103384 103611 78 + . . scaffold267 WUBlastX DNA_Maverick 103615 104055 234 + . . scaffold267 WUBlastX DNA_Maverick 104076 104297 100 - . . scaffold267 WUBlastX DNA_Maverick 104264 104728 152 - . . scaffold267 GLEAN mRNA 104785 105093 0.999372 - . ID=CGI_10018287; scaffold267 GLEAN promoter 105094 106093 0.999372 - . ID=CGI_10018287; scaffold267 WUBlastX DNA_Maverick 105493 106569 589 - . . scaffold267 WUBlastX DNA_Maverick 107264 107872 423 - . . scaffold267 GLEAN mRNA 108194 108592 0.999984 - . ID=CGI_10018288; scaffold267 GLEAN promoter 108593 109592 0.999984 - . ID=CGI_10018288; scaffold267 GLEAN mRNA 109916 113407 0.999351 - . ID=CGI_10018289; scaffold267 TRF Tandem_Repeat 111018 111070 70 + . . scaffold267 TRF Tandem_Repeat 111018 111061 61 + . . scaffold267 WUBlastX DNA_Maverick 111718 112086 77 - . . scaffold267 GLEAN promoter 113408 114407 0.999351 - . ID=CGI_10018289; scaffold267 WUBlastX LTR_DIRS 115684 115821 60 - . . scaffold267 TRF Tandem_Repeat 123863 123907 90 + . . scaffold267 TRF Tandem_Repeat 124172 124282 170 + . . scaffold267 WUBlastX DNA_Harbinger 126383 127081 171 - . . scaffold267 WUBlastX DNA_Harbinger 126518 127066 293 - . . scaffold267 WUBlastX DNA_Harbinger 127096 127392 46 - . . scaffold267 WUBlastX DNA_Harbinger 127108 127470 24 - . . scaffold267 GLEAN promoter 128860 129859 1 + . ID=CGI_10018290; scaffold267 GLEAN mRNA 129860 130496 1 + . ID=CGI_10018290; scaffold267 GLEAN mRNA 132582 134420 0.999984 - . ID=CGI_10018292; scaffold267 GLEAN promoter 134421 135420 0.999984 - . ID=CGI_10018292; scaffold267 GLEAN mRNA 139483 142288 0.673836 - . ID=CGI_10018293; scaffold267 GLEAN promoter 142289 143288 0.673836 - . ID=CGI_10018293; scaffold267 GLEAN mRNA 143800 144021 1 - . ID=CGI_10018294; scaffold267 GLEAN promoter 144022 145021 1 - . ID=CGI_10018294; scaffold267 GLEAN mRNA 144172 146078 0.999994 - . ID=CGI_10018295; scaffold267 GLEAN promoter 146079 147078 0.999994 - . ID=CGI_10018295; scaffold267 TRF Tandem_Repeat 146916 146949 52 + . . scaffold267 GLEAN promoter 149724 150723 0.588634 + . ID=CGI_10018296; scaffold267 WUBlastX LTR_Gypsy-Cigr 150214 150435 96 + . . scaffold267 WUBlastX LTR_Gypsy 150423 150716 99 + . . scaffold267 GLEAN mRNA 150724 150975 0.588634 + . ID=CGI_10018296; scaffold267 GLEAN mRNA 150838 169540 0.999588 - . ID=CGI_10018297; scaffold267 WUBlastX LTR_Gypsy 150923 150985 24 + . . scaffold267 TRF Tandem_Repeat 161791 162304 534 + . . scaffold267 GLEAN promoter 169541 170540 0.999588 - . ID=CGI_10018297; scaffold267 TRF Tandem_Repeat 182069 182095 54 + . . scaffold267 TRF Tandem_Repeat 185233 186193 1446 + . . scaffold267 WUBlastX DNA_TcMar-Tc2 190258 190956 111 - . . scaffold267 WUBlastX DNA_TcMar-Tc2 190562 191116 107 - . . scaffold267 WUBlastX DNA_TcMar-Tc2 191097 191312 46 - . . scaffold267 WUBlastX LTR_DIRS 201258 201410 51 - . . scaffold267 WUBlastX LTR_DIRS 201421 201636 27 - . . scaffold267 WUBlastX LTR_DIRS 201421 201525 32 - . . scaffold267 WUBlastX DNA_TcMar-Fot1 218415 220301 271 - . . scaffold267 WUBlastX DNA_TcMar-Fot1 218712 220184 386 - . . scaffold267 WUBlastX DNA_TcMar-Fot1 218979 220175 425 - . . scaffold267 WUBlastX LINE_RTE-BovB 226731 226826 46 - . . scaffold267 WUBlastX LINE_RTE-BovB 226761 226835 55 - . . scaffold267 WUBlastX LINE_RTE-BovB 226849 227076 61 - . . scaffold267 WUBlastX LINE_RTE-BovB 226855 227013 69 - . . scaffold267 GLEAN mRNA 234546 236485 0.707083 - . ID=CGI_10018298; scaffold267 GLEAN promoter 236486 237485 0.707083 - . ID=CGI_10018298; scaffold267 TRF Tandem_Repeat 238178 238348 117 + . . scaffold267 TRF Tandem_Repeat 238347 238534 216 + . . scaffold267 TRF Tandem_Repeat 238417 238536 89 + . . scaffold267 GLEAN promoter 238895 239894 0.887632 + . ID=CGI_10018299; scaffold267 TRF Tandem_Repeat 239152 239194 86 + . . scaffold267 GLEAN mRNA 239895 245036 0.887632 + . ID=CGI_10018299; scaffold267 GLEAN mRNA 246236 259217 0.72876 - . ID=CGI_10018300; scaffold267 GLEAN promoter 258525 259524 1 + . ID=CGI_10018301; scaffold267 GLEAN promoter 259218 260217 0.72876 - . ID=CGI_10018300; scaffold267 GLEAN mRNA 259525 265046 1 + . ID=CGI_10018301; scaffold267 GLEAN mRNA 259972 282606 0.999026 - . ID=CGI_10018302; scaffold267 TRF Tandem_Repeat 263328 264531 1765 + . . scaffold267 TRF Tandem_Repeat 272679 273840 1567 + . . scaffold267 TRF Tandem_Repeat 280136 280277 266 + . . scaffold267 GLEAN promoter 280310 281309 0.922088 + . ID=CGI_10018303; scaffold267 GLEAN mRNA 281310 293068 0.922088 + . ID=CGI_10018303; scaffold267 GLEAN promoter 282607 283606 0.999026 - . ID=CGI_10018302; scaffold267 GLEAN mRNA 283189 291018 0.643193 - . ID=CGI_10018304; scaffold267 TRF Tandem_Repeat 283874 285441 1857 + . . scaffold267 GLEAN promoter 291019 292018 0.643193 - . ID=CGI_10018304; scaffold267 GLEAN promoter 292085 293084 0.998559 + . ID=CGI_10018305; scaffold267 GLEAN mRNA 293085 317889 0.998559 + . ID=CGI_10018305; scaffold267 TRF Tandem_Repeat 322820 322844 50 + . . scaffold267 GLEAN promoter 322992 323991 0.988856 + . ID=CGI_10018306; scaffold267 TRF Tandem_Repeat 323334 323380 94 + . . scaffold267 GLEAN mRNA 323992 359804 0.988856 + . ID=CGI_10018306; scaffold267 GLEAN promoter 364338 365337 1 + . ID=CGI_10018307; scaffold267 GLEAN mRNA 365338 373963 1 + . ID=CGI_10018307; scaffold267 WUBlastX DNA_TcMar-Marin 367282 367413 20 + . . scaffold267 WUBlastX DNA_TcMar-Tc1 367315 368316 598 + . . scaffold267 TRF Tandem_Repeat 370195 370309 90 + . . scaffold267 GLEAN promoter 373990 374989 0.999957 + . ID=CGI_10018308; scaffold267 GLEAN mRNA 374990 386053 0.999957 + . ID=CGI_10018308; scaffold267 GLEAN mRNA 386501 394593 0.998077 - . ID=CGI_10018309; scaffold267 TRF Tandem_Repeat 394386 394440 110 + . . scaffold267 GLEAN promoter 394594 395593 0.998077 - . ID=CGI_10018309; scaffold267 GLEAN promoter 394839 395838 1 + . ID=CGI_10018310; scaffold267 GLEAN mRNA 395839 405071 1 + . ID=CGI_10018310; scaffold267 TRF Tandem_Repeat 400683 400778 93 + . . scaffold267 TRF Tandem_Repeat 400684 400782 108 + . . scaffold267 TRF Tandem_Repeat 400696 400785 99 + . . scaffold267 TRF Tandem_Repeat 400809 401603 1213 + . . scaffold267 TRF Tandem_Repeat 408490 408671 274 + . . scaffold267 TRF Tandem_Repeat 409930 410254 348 + . . scaffold267 TRF Tandem_Repeat 409932 410264 416 + . . scaffold267 TRF Tandem_Repeat 409944 410254 437 + . . scaffold267 TRF Tandem_Repeat 417811 417863 106 + . . scaffold267 GLEAN promoter 421023 422022 0.999214 + . ID=CGI_10018311; scaffold267 GLEAN mRNA 422023 428053 0.999214 + . ID=CGI_10018311; scaffold267 TRF Tandem_Repeat 422438 422479 84 + . . scaffold267 TRF Tandem_Repeat 423530 423567 76 + . . scaffold267 TRF Tandem_Repeat 428150 428185 72 + . . scaffold267 TRF Tandem_Repeat 429987 430018 64 + . . scaffold267 TRF Tandem_Repeat 430603 430653 93 + . . scaffold267 TRF Tandem_Repeat 433764 433814 102 + . . scaffold267 TRF Tandem_Repeat 440496 440569 148 + . . scaffold267 TRF Tandem_Repeat 441471 441497 54 + . . scaffold267 GLEAN promoter 443663 444662 0.615159 + . ID=CGI_10018312; scaffold267 TRF Tandem_Repeat 444491 444554 66 + . . scaffold267 TRF Tandem_Repeat 444499 444555 98 + . . scaffold267 GLEAN mRNA 444663 458922 0.615159 + . ID=CGI_10018312; scaffold267 TRF Tandem_Repeat 447005 447062 82 + . . scaffold267 TRF Tandem_Repeat 457795 457844 100 + . . scaffold267 TRF Tandem_Repeat 462854 462909 71 + . . scaffold267 TRF Tandem_Repeat 462858 462912 65 + . . scaffold267 WUBlastX LINE_RTE-X 478730 479146 31 + . . scaffold267 WUBlastX LINE_RTE-X 478793 479017 93 + . . scaffold267 WUBlastX LINE_RTE-X 478832 479137 84 + . . scaffold267 WUBlastX DNA_P 489352 489642 102 + . . scaffold267 GLEAN promoter 491434 492433 1 + . ID=CGI_10018313; scaffold267 WUBlastX DNA_Kolobok 492389 492589 59 + . . scaffold267 WUBlastX DNA_Kolobok 492428 492604 75 + . . scaffold267 GLEAN mRNA 492434 492911 1 + . ID=CGI_10018313; scaffold267 WUBlastX DNA_Kolobok 492708 492878 91 + . . scaffold267 WUBlastX DNA_Kolobok 493177 493263 20 + . . scaffold267 GLEAN mRNA 493275 498578 0.739869 - . ID=CGI_10018314; scaffold267 WUBlastX DNA_Kolobok 493287 493478 84 - . . scaffold267 WUBlastX DNA_Kolobok 493296 493439 87 - . . scaffold267 GLEAN promoter 498579 499578 0.739869 - . ID=CGI_10018314; scaffold267 GLEAN mRNA 498851 499039 1 - . ID=CGI_10018315; scaffold267 GLEAN promoter 499040 500039 1 - . ID=CGI_10018315; scaffold267 GLEAN mRNA 499525 499833 1 - . ID=CGI_10018316; scaffold267 GLEAN promoter 499834 500833 1 - . ID=CGI_10018316; scaffold267 GLEAN mRNA 499861 502467 0.86201 - . ID=CGI_10018317; scaffold267 GLEAN promoter 502468 503467 0.86201 - . ID=CGI_10018317; scaffold267 GLEAN promoter 503693 504692 1 + . ID=CGI_10018318; scaffold267 GLEAN mRNA 504693 505362 1 + . ID=CGI_10018318; scaffold267 GLEAN promoter 506038 507037 0.988826 + . ID=CGI_10018319; scaffold267 GLEAN mRNA 507038 508919 0.988826 + . ID=CGI_10018319; scaffold267 GLEAN promoter 515556 516555 0.999372 + . ID=CGI_10018320; scaffold267 GLEAN mRNA 516556 516882 0.999372 + . ID=CGI_10018320; scaffold267 GLEAN mRNA 523511 523774 0.99679 - . ID=CGI_10018321; scaffold267 GLEAN promoter 523775 524774 0.99679 - . ID=CGI_10018321; scaffold267 TRF Tandem_Repeat 531010 531066 114 + . . scaffold267 WUBlastX LTR_Gypsy 542797 543222 293 - . . scaffold267 WUBlastX LTR_Gypsy 543195 543410 130 - . . scaffold268 TRF Tandem_Repeat 11000 11678 1162 + . . scaffold268 TRF Tandem_Repeat 12397 12781 565 + . . scaffold268 GLEAN mRNA 14039 15951 0.986452 - . ID=CGI_10005545; scaffold268 GLEAN promoter 15952 16951 0.986452 - . ID=CGI_10005545; scaffold268 GLEAN mRNA 18283 22106 0.910751 - . ID=CGI_10005546; scaffold268 TRF Tandem_Repeat 18703 18839 140 + . . scaffold268 TRF Tandem_Repeat 19496 19688 194 + . . scaffold268 TRF Tandem_Repeat 20539 20799 450 + . . scaffold268 GLEAN promoter 22107 23106 0.910751 - . ID=CGI_10005546; scaffold268 TRF Tandem_Repeat 24168 24821 1114 + . . scaffold268 GLEAN mRNA 25408 28576 0.992456 - . ID=CGI_10005547; scaffold268 GLEAN promoter 28577 29576 0.992456 - . ID=CGI_10005547; scaffold268 GLEAN mRNA 30885 41240 0.816962 - . ID=CGI_10005548; scaffold268 GLEAN promoter 41241 42240 0.816962 - . ID=CGI_10005548; scaffold268 WUBlastX LINE_L2 54662 55075 24 + . . scaffold268 WUBlastX LINE_L2 54679 54915 28 + . . scaffold268 WUBlastX LINE_CR1-L2 54727 54918 56 + . . scaffold268 WUBlastX LINE_CR1-L2 55588 55704 23 + . . scaffold268 WUBlastX LINE_CR1-L2 56576 56671 27 + . . scaffold268 WUBlastX LTR_Ngaro 60860 61081 122 - . . scaffold268 WUBlastX LINE_L1-Tx1 61736 65170 1130 - . . scaffold268 WUBlastX LINE_CR1 66072 66641 155 - . . scaffold268 WUBlastX LTR_Ngaro 66895 67599 225 - . . scaffold268 WUBlastX LINE_RTE-X 67753 68154 50 - . . scaffold268 TRF Tandem_Repeat 70442 70619 80 + . . scaffold268 TRF Tandem_Repeat 70491 70619 77 + . . scaffold268 TRF Tandem_Repeat 79224 79272 89 + . . scaffold268 TRF Tandem_Repeat 79272 79301 60 + . . scaffold268 TRF Tandem_Repeat 82220 82311 139 + . . scaffold268 TRF Tandem_Repeat 82220 82311 139 + . . scaffold268 TRF Tandem_Repeat 83041 83091 84 + . . scaffold268 TRF Tandem_Repeat 100991 101030 71 + . . scaffold268 TRF Tandem_Repeat 102400 102496 108 + . . scaffold268 TRF Tandem_Repeat 105825 105903 149 + . . scaffold268 TRF Tandem_Repeat 105905 105933 51 + . . scaffold268 TRF Tandem_Repeat 106849 106875 54 + . . scaffold268 WUBlastX LINE_L1 119402 119566 22 + . . scaffold268 WUBlastX LINE_L1-Tx1 119541 119753 43 + . . scaffold268 WUBlastX LINE_L1-Tx1 120397 121281 574 + . . scaffold26804 GLEAN mRNA 316 3894 1 - . ID=CGI_10000329; scaffold26804 GLEAN promoter 3895 4199 1 - . ID=CGI_10000329; scaffold269 GLEAN promoter 1225 2224 0.69447 + . ID=CGI_10018981; scaffold269 GLEAN promoter 1800 2799 1 + . ID=CGI_10018982; scaffold269 GLEAN mRNA 2225 2479 0.69447 + . ID=CGI_10018981; scaffold269 GLEAN mRNA 2800 3003 1 + . ID=CGI_10018982; scaffold269 GLEAN mRNA 5286 6029 0.99997 - . ID=CGI_10018983; scaffold269 GLEAN promoter 6030 7029 0.99997 - . ID=CGI_10018983; scaffold269 WUBlastX LINE_RTE-BovB 8876 9100 50 + . . scaffold269 WUBlastX LINE_RTE-BovB 8915 9226 87 + . . scaffold269 WUBlastX LINE_RTE-BovB 9229 9534 59 + . . scaffold269 WUBlastX LINE_RTE-BovB 9289 9492 122 + . . scaffold269 WUBlastX LINE_RTE-BovB 9289 9549 84 + . . scaffold269 WUBlastX LINE_RTE-BovB 9557 9727 68 + . . scaffold269 WUBlastX LINE_RTE-BovB 9557 9700 69 + . . scaffold269 WUBlastX LINE_RTE-BovB 9682 10209 25 + . . scaffold269 WUBlastX LINE_RTE-BovB 9964 10209 60 + . . scaffold269 WUBlastX LINE_RTE-BovB 10222 10554 89 + . . scaffold269 WUBlastX LINE_RTE-BovB 10240 10629 32 + . . scaffold269 GLEAN promoter 11233 12232 0.980085 + . ID=CGI_10018984; scaffold269 GLEAN mRNA 12233 48550 0.980085 + . ID=CGI_10018984; scaffold269 TRF Tandem_Repeat 31211 31262 104 + . . scaffold269 TRF Tandem_Repeat 32259 32293 70 + . . scaffold269 TRF Tandem_Repeat 36429 37526 1601 + . . scaffold269 GLEAN mRNA 53617 63946 1 - . ID=CGI_10018985; scaffold269 TRF Tandem_Repeat 62901 62930 51 + . . scaffold269 TRF Tandem_Repeat 63456 63506 102 + . . scaffold269 GLEAN promoter 63947 64946 1 - . ID=CGI_10018985; scaffold269 GLEAN mRNA 67749 72894 0.544852 - . ID=CGI_10018986; scaffold269 TRF Tandem_Repeat 70283 70784 491 + . . scaffold269 GLEAN promoter 72895 73894 0.544852 - . ID=CGI_10018986; scaffold269 GLEAN mRNA 76649 83885 0.59336 - . ID=CGI_10018987; scaffold269 GLEAN promoter 83886 84885 0.59336 - . ID=CGI_10018987; scaffold269 TRF Tandem_Repeat 84062 84099 67 + . . scaffold269 TRF Tandem_Repeat 87428 87461 59 + . . scaffold269 GLEAN mRNA 87606 94325 0.999986 - . ID=CGI_10018988; scaffold269 TRF Tandem_Repeat 91900 91994 118 + . . scaffold269 TRF Tandem_Repeat 92043 92141 182 + . . scaffold269 GLEAN promoter 94326 95325 0.999986 - . ID=CGI_10018988; scaffold269 GLEAN mRNA 98019 104666 0.593012 - . ID=CGI_10018989; scaffold269 TRF Tandem_Repeat 99259 99349 173 + . . scaffold269 TRF Tandem_Repeat 102829 102905 154 + . . scaffold269 GLEAN promoter 104667 105666 0.593012 - . ID=CGI_10018989; scaffold269 GLEAN promoter 109344 110343 0.709697 + . ID=CGI_10018990; scaffold269 GLEAN mRNA 110344 138649 0.709697 + . ID=CGI_10018990; scaffold269 TRF Tandem_Repeat 110697 110730 59 + . . scaffold269 TRF Tandem_Repeat 111608 111659 104 + . . scaffold269 TRF Tandem_Repeat 117385 117467 139 + . . scaffold269 TRF Tandem_Repeat 120078 120131 74 + . . scaffold269 TRF Tandem_Repeat 121355 123931 2551 + . . scaffold269 TRF Tandem_Repeat 130781 130850 51 + . . scaffold269 GLEAN mRNA 143041 149282 0.99687 - . ID=CGI_10018991; scaffold269 GLEAN promoter 149283 150282 0.99687 - . ID=CGI_10018991; scaffold269 GLEAN promoter 149332 150331 0.593391 + . ID=CGI_10018992; scaffold269 GLEAN mRNA 150332 153290 0.593391 + . ID=CGI_10018992; scaffold269 GLEAN mRNA 153717 159746 0.999376 - . ID=CGI_10018993; scaffold269 GLEAN promoter 159747 160746 0.999376 - . ID=CGI_10018993; scaffold269 TRF Tandem_Repeat 160742 160780 78 + . . scaffold269 TRF Tandem_Repeat 160818 160893 152 + . . scaffold269 TRF Tandem_Repeat 163902 163936 70 + . . scaffold269 GLEAN promoter 166999 167998 0.577596 + . ID=CGI_10018994; scaffold269 GLEAN mRNA 167999 185991 0.577596 + . ID=CGI_10018994; scaffold269 GLEAN promoter 185071 186070 0.960589 + . ID=CGI_10018995; scaffold269 GLEAN mRNA 186071 190455 0.960589 + . ID=CGI_10018995; scaffold269 TRF Tandem_Repeat 187379 187422 88 + . . scaffold269 GLEAN promoter 191453 192452 0.999993 + . ID=CGI_10018996; scaffold269 GLEAN mRNA 192453 200699 0.999993 + . ID=CGI_10018996; scaffold269 WUBlastX LINE_CR1 197738 198148 81 - . . scaffold269 WUBlastX LINE_RTE-X 197780 198103 96 - . . scaffold269 WUBlastX LTR_Ngaro 198354 199337 466 - . . scaffold269 WUBlastX LTR_Ngaro 199268 199366 59 - . . scaffold269 TRF Tandem_Repeat 202241 202965 668 + . . scaffold269 WUBlastX LINE_RTE-BovB 205168 205353 70 + . . scaffold269 WUBlastX LINE_RTE-X 224945 225565 66 - . . scaffold269 WUBlastX LINE_RTE-X 225480 225695 75 - . . scaffold269 TRF Tandem_Repeat 234975 235001 54 + . . scaffold269 TRF Tandem_Repeat 239669 239845 327 + . . scaffold269 WUBlastX LINE_RTE-X 250625 250846 36 + . . scaffold269 WUBlastX LINE_RTE-X 250718 250933 36 + . . scaffold269 WUBlastX LINE_RTE-X 250721 250897 41 + . . scaffold269 GLEAN mRNA 259225 286110 0.999676 - . ID=CGI_10018997; scaffold269 TRF Tandem_Repeat 261378 261479 100 + . . scaffold269 TRF Tandem_Repeat 264287 264311 50 + . . scaffold269 TRF Tandem_Repeat 264525 265340 811 + . . scaffold269 TRF Tandem_Repeat 264525 265340 882 + . . scaffold269 TRF Tandem_Repeat 264905 265340 604 + . . scaffold269 TRF Tandem_Repeat 272565 272600 54 + . . scaffold269 TRF Tandem_Repeat 285262 285417 118 + . . scaffold269 GLEAN promoter 286111 287110 0.999676 - . ID=CGI_10018997; scaffold269 GLEAN mRNA 288512 303416 0.703169 - . ID=CGI_10018998; scaffold269 TRF Tandem_Repeat 292783 292822 80 + . . scaffold269 GLEAN promoter 303417 304416 0.703169 - . ID=CGI_10018998; scaffold269 TRF Tandem_Repeat 309486 309529 72 + . . scaffold269 TRF Tandem_Repeat 309487 309540 56 + . . scaffold269 WUBlastX LINE_RTE-X 313888 314340 71 + . . scaffold269 WUBlastX LINE_RTE-X 314342 314569 31 + . . scaffold269 WUBlastX LINE_RTE-X 314354 314449 45 + . . scaffold269 TRF Tandem_Repeat 314935 314964 53 + . . scaffold269 GLEAN mRNA 323555 326368 1 - . ID=CGI_10018999; scaffold269 GLEAN promoter 326369 327368 1 - . ID=CGI_10018999; scaffold269 GLEAN mRNA 336199 337970 0.911813 - . ID=CGI_10019000; scaffold269 GLEAN promoter 337971 338970 0.911813 - . ID=CGI_10019000; scaffold269 GLEAN mRNA 340356 345264 0.982323 - . ID=CGI_10019001; scaffold269 GLEAN promoter 345265 346264 0.982323 - . ID=CGI_10019001; scaffold269 TRF Tandem_Repeat 346422 346460 69 + . . scaffold269 TRF Tandem_Repeat 346464 346505 84 + . . scaffold269 GLEAN mRNA 346578 379738 0.796804 - . ID=CGI_10019002; scaffold269 TRF Tandem_Repeat 352513 352547 70 + . . scaffold269 TRF Tandem_Repeat 370286 370357 128 + . . scaffold269 TRF Tandem_Repeat 373399 373426 56 + . . scaffold269 GLEAN promoter 379163 380162 0.593383 + . ID=CGI_10019003; scaffold269 GLEAN promoter 379739 380738 0.796804 - . ID=CGI_10019002; scaffold269 GLEAN mRNA 380163 383425 0.593383 + . ID=CGI_10019003; scaffold269 TRF Tandem_Repeat 386449 386504 62 + . . scaffold269 TRF Tandem_Repeat 386453 386507 56 + . . scaffold269 GLEAN mRNA 389230 404525 0.640999 - . ID=CGI_10019004; scaffold269 GLEAN promoter 404526 405525 0.640999 - . ID=CGI_10019004; scaffold269 TRF Tandem_Repeat 407800 407855 112 + . . scaffold269 TRF Tandem_Repeat 410799 410872 148 + . . scaffold269 TRF Tandem_Repeat 412105 412157 106 + . . scaffold269 GLEAN mRNA 413129 432084 0.541124 - . ID=CGI_10019005; scaffold269 TRF Tandem_Repeat 426455 426515 122 + . . scaffold269 GLEAN promoter 432085 433084 0.541124 - . ID=CGI_10019005; scaffold269 GLEAN mRNA 436625 461028 0.269378 - . ID=CGI_10019006; scaffold269 WUBlastX LTR_Gypsy 436661 436825 42 - . . scaffold269 TRF Tandem_Repeat 438456 438499 61 + . . scaffold269 TRF Tandem_Repeat 445728 445767 73 + . . scaffold269 TRF Tandem_Repeat 447797 447842 92 + . . scaffold269 TRF Tandem_Repeat 454531 454661 59 + . . scaffold269 TRF Tandem_Repeat 454531 454663 53 + . . scaffold269 TRF Tandem_Repeat 454533 454660 64 + . . scaffold269 TRF Tandem_Repeat 454573 454663 60 + . . scaffold269 WUBlastX LINE_RTE-X 455669 455890 132 + . . scaffold269 WUBlastX LINE_RTE-X 455924 456049 81 - . . scaffold269 WUBlastX LINE_RTE-X 455977 456306 82 + . . scaffold269 WUBlastX LINE_RTE-X 456031 456510 71 + . . scaffold269 WUBlastX LINE_RTE-X 456067 456309 110 + . . scaffold269 TRF Tandem_Repeat 458128 458166 78 + . . scaffold269 GLEAN promoter 461029 462028 0.269378 - . ID=CGI_10019006; scaffold269 TRF Tandem_Repeat 463899 463937 78 + . . scaffold269 TRF Tandem_Repeat 471782 471834 106 + . . scaffold269 WUBlastX RC_Helitron 476696 476767 37 + . . scaffold269 WUBlastX RC_Helitron 476708 477205 92 + . . scaffold269 WUBlastX RC_Helitron 477457 477546 66 + . . scaffold269 WUBlastX DNA_Helitron 477478 477579 50 + . . scaffold269 WUBlastX RC_Helitron 478046 478129 31 + . . scaffold269 WUBlastX RC_Helitron 478067 478129 31 + . . scaffold269 WUBlastX RC_Helitron 478076 478141 26 + . . scaffold269 WUBlastX DNA_P 479112 479495 48 - . . scaffold269 WUBlastX DNA_Harbinger 484083 484229 50 + . . scaffold269 GLEAN promoter 511227 512226 0.528485 + . ID=CGI_10019008; scaffold269 GLEAN mRNA 512227 513624 0.528485 + . ID=CGI_10019008; scaffold269 TRF Tandem_Repeat 517498 517614 79 + . . scaffold269 TRF Tandem_Repeat 517498 517617 112 + . . scaffold269 TRF Tandem_Repeat 517503 517617 109 + . . scaffold269 TRF Tandem_Repeat 517505 517601 64 + . . scaffold269 WUBlastX LTR_DIRS 517878 518750 546 - . . scaffold269 WUBlastX LTR_DIRS 518639 519970 848 - . . scaffold269 TRF Tandem_Repeat 545982 546011 60 + . . scaffold269 GLEAN mRNA 550373 562382 0.998034 - . ID=CGI_10019009; scaffold269 TRF Tandem_Repeat 551792 552355 805 + . . scaffold269 TRF Tandem_Repeat 551792 552355 805 + . . scaffold269 TRF Tandem_Repeat 551799 552355 347 + . . scaffold269 TRF Tandem_Repeat 555833 555877 90 + . . scaffold269 TRF Tandem_Repeat 561328 561388 81 + . . scaffold269 GLEAN promoter 562383 563382 0.998034 - . ID=CGI_10019009; scaffold269 TRF Tandem_Repeat 565884 565925 84 + . . scaffold269 TRF Tandem_Repeat 572118 572164 85 + . . scaffold269 TRF Tandem_Repeat 574455 574497 86 + . . scaffold269 TRF Tandem_Repeat 575565 575631 89 + . . scaffold27 TRF Tandem_Repeat 4839 4868 60 + . . scaffold27 GLEAN promoter 7483 8482 0.999676 + . ID=CGI_10003285; scaffold27 GLEAN mRNA 8483 22692 0.999676 + . ID=CGI_10003285; scaffold27 TRF Tandem_Repeat 11465 11515 102 + . . scaffold27 TRF Tandem_Repeat 15246 15480 191 + . . scaffold27 TRF Tandem_Repeat 29243 29275 66 + . . scaffold27 TRF Tandem_Repeat 41379 41410 64 + . . scaffold27 GLEAN mRNA 52591 55410 0.880324 - . ID=CGI_10003286; scaffold27 GLEAN promoter 55411 56410 0.880324 - . ID=CGI_10003286; scaffold27 WUBlastX LTR_Gypsy-Cigr 57333 57866 171 + . . scaffold27 WUBlastX LTR_Gypsy-Cigr 57381 57971 166 + . . scaffold27 WUBlastX LTR_Gypsy 57402 58250 96 + . . scaffold27 WUBlastX LTR_Gypsy 58188 58745 105 + . . scaffold27 WUBlastX LTR_Gypsy 58853 58948 24 + . . scaffold270 GLEAN promoter 1 589 0.999949 + . ID=CGI_10005003; scaffold270 GLEAN mRNA 590 6464 0.999949 + . ID=CGI_10005003; scaffold270 TRF Tandem_Repeat 3174 3560 546 + . . scaffold270 GLEAN mRNA 9291 18502 0.997397 - . ID=CGI_10005004; scaffold270 GLEAN promoter 18503 19502 0.997397 - . ID=CGI_10005004; scaffold270 GLEAN mRNA 18806 19477 0.83621 - . ID=CGI_10005005; scaffold270 GLEAN promoter 19478 20477 0.83621 - . ID=CGI_10005005; scaffold270 GLEAN promoter 23392 24391 0.999635 + . ID=CGI_10005006; scaffold270 GLEAN mRNA 24392 34624 0.999635 + . ID=CGI_10005006; scaffold270 GLEAN mRNA 36077 46840 0.999674 - . ID=CGI_10005007; scaffold270 GLEAN promoter 46841 47840 0.999674 - . ID=CGI_10005007; scaffold270 GLEAN promoter 47408 48407 0.919626 + . ID=CGI_10005008; scaffold270 GLEAN mRNA 48408 50542 0.919626 + . ID=CGI_10005008; scaffold270 GLEAN mRNA 54487 55914 0.365927 - . ID=CGI_10005009; scaffold270 GLEAN promoter 55915 56914 0.365927 - . ID=CGI_10005009; scaffold270 WUBlastX DNA_Harbinger 56448 56630 22 + . . scaffold270 WUBlastX DNA_Harbinger 56781 57050 68 + . . scaffold270 TRF Tandem_Repeat 60899 60966 127 + . . scaffold270 TRF Tandem_Repeat 60966 61021 112 + . . scaffold270 TRF Tandem_Repeat 69738 69762 50 + . . scaffold270 TRF Tandem_Repeat 69867 69891 50 + . . scaffold270 TRF Tandem_Repeat 76536 76571 72 + . . scaffold270 WUBlastX LINE_RTE-BovB 95527 95643 52 + . . scaffold270 WUBlastX LINE_RTE-BovB 95545 95742 116 + . . scaffold270 WUBlastX LINE_RTE-BovB 95745 96044 146 + . . scaffold270 WUBlastX LINE_RTE-BovB 95831 96793 514 + . . scaffold270 WUBlastX LINE_RTE-BovB 95831 97126 454 + . . scaffold270 GLEAN mRNA 101065 101439 0.447051 - . ID=CGI_10005010; scaffold270 GLEAN promoter 101440 102439 0.447051 - . ID=CGI_10005010; scaffold270 TRF Tandem_Repeat 102694 103086 224 + . . scaffold270 TRF Tandem_Repeat 102694 103044 239 + . . scaffold270 TRF Tandem_Repeat 105062 105118 51 + . . scaffold270 GLEAN promoter 108269 109268 0.999372 + . ID=CGI_10005011; scaffold270 GLEAN mRNA 109269 109508 0.999372 + . ID=CGI_10005011; scaffold270 WUBlastX LINE_L2 115010 115072 21 - . . scaffold270 WUBlastX LINE_L2 115331 115801 90 - . . scaffold270 WUBlastX LINE_CR1 115589 115966 55 - . . scaffold270 WUBlastX LINE_L2 115592 115867 61 - . . scaffold271 GLEAN promoter 5267 6266 0.667463 + . ID=CGI_10024454; scaffold271 GLEAN mRNA 6267 15466 0.667463 + . ID=CGI_10024454; scaffold271 WUBlastX DNA_TcMar-Tc1 22440 22814 83 + . . scaffold271 TRF Tandem_Repeat 22889 22943 51 + . . scaffold271 WUBlastX DNA_TcMar-Tc1 24201 24401 92 + . . scaffold271 WUBlastX DNA_TcMar-Tc1 24413 24610 97 + . . scaffold271 WUBlastX DNA_TcMar-Tc1 24416 24655 44 + . . scaffold271 WUBlastX DNA_TcMar-Tc1 24616 24720 27 + . . scaffold271 TRF Tandem_Repeat 29749 29880 192 + . . scaffold271 TRF Tandem_Repeat 30509 30565 114 + . . scaffold271 TRF Tandem_Repeat 35335 35466 183 + . . scaffold271 GLEAN promoter 43227 44226 0.999997 + . ID=CGI_10024455; scaffold271 GLEAN mRNA 44227 45533 0.999997 + . ID=CGI_10024455; scaffold271 WUBlastX DNA_TcMar-Tc1 46158 47192 320 - . . scaffold271 GLEAN mRNA 48518 49759 0.579463 - . ID=CGI_10024456; scaffold271 GLEAN promoter 49760 50759 0.579463 - . ID=CGI_10024456; scaffold271 TRF Tandem_Repeat 52669 52712 88 + . . scaffold271 WUBlastX LINE_L1-Tx1 52746 52850 20 + . . scaffold271 WUBlastX LINE_L1-Tx1 53296 54825 276 + . . scaffold271 WUBlastX LINE_L1-Tx1 53458 54717 548 + . . scaffold271 WUBlastX LINE_L1-Tx1 54759 55235 46 + . . scaffold271 WUBlastX LINE_L1-Tx1 55259 55588 58 + . . scaffold271 WUBlastX LINE_L1-Tx1 55259 55648 52 + . . scaffold271 WUBlastX LINE_L1-Tx1 55259 55498 62 + . . scaffold271 GLEAN promoter 57008 58007 0.553565 + . ID=CGI_10024457; scaffold271 GLEAN mRNA 58008 58544 0.553565 + . ID=CGI_10024457; scaffold271 TRF Tandem_Repeat 69683 69748 132 + . . scaffold271 TRF Tandem_Repeat 79019 79098 144 + . . scaffold271 TRF Tandem_Repeat 91930 91970 82 + . . scaffold271 TRF Tandem_Repeat 96812 96853 77 + . . scaffold271 WUBlastX LINE_RTE-X 96878 97021 95 + . . scaffold271 WUBlastX LINE_RTE-X 97030 97248 36 + . . scaffold271 TRF Tandem_Repeat 100106 100161 112 + . . scaffold271 WUBlastX DNA_Kolobok 114607 114849 53 + . . scaffold271 WUBlastX DNA_Kolobok 114978 115106 51 + . . scaffold271 WUBlastX DNA_Kolobok 115368 115802 231 - . . scaffold271 WUBlastX DNA_Kolobok 115795 116046 141 - . . scaffold271 WUBlastX DNA_Kolobok 116049 116735 157 - . . scaffold271 TRF Tandem_Repeat 130482 130522 55 + . . scaffold271 GLEAN promoter 131078 132077 0.999439 + . ID=CGI_10024458; scaffold271 GLEAN mRNA 132078 132290 0.999439 + . ID=CGI_10024458; scaffold271 TRF Tandem_Repeat 138473 138519 67 + . . scaffold271 WUBlastX LINE_RTE-BovB 161914 162339 317 - . . scaffold271 WUBlastX LINE_RTE-BovB 161926 162528 303 - . . scaffold271 TRF Tandem_Repeat 162872 163844 878 + . . scaffold271 GLEAN mRNA 165937 177544 1 - . ID=CGI_10024459; scaffold271 TRF Tandem_Repeat 168520 168549 60 + . . scaffold271 GLEAN promoter 177545 178544 1 - . ID=CGI_10024459; scaffold271 WUBlastX DNA_Academ 185660 186814 288 - . . scaffold271 WUBlastX DNA_Academ 186879 187763 310 - . . scaffold271 WUBlastX DNA_Academ 187173 188795 302 - . . scaffold271 WUBlastX DNA_Academ 188571 188846 70 - . . scaffold271 GLEAN mRNA 188870 219899 0.29689 - . ID=CGI_10024460; scaffold271 WUBlastX DNA_Academ 188879 189073 22 - . . scaffold271 WUBlastX DNA_Academ 189203 189841 23 - . . scaffold271 WUBlastX DNA_Academ 189203 189589 55 - . . scaffold271 WUBlastX DNA_Academ 189770 189880 23 - . . scaffold271 WUBlastX LINE_L2 201391 202701 89 + . . scaffold271 WUBlastX LINE_L2 201616 202695 686 + . . scaffold271 TRF Tandem_Repeat 206995 207037 86 + . . scaffold271 TRF Tandem_Repeat 209205 209238 68 + . . scaffold271 TRF Tandem_Repeat 212264 212354 146 + . . scaffold271 GLEAN promoter 219900 220899 0.29689 - . ID=CGI_10024460; scaffold271 GLEAN promoter 222097 223096 1 + . ID=CGI_10024461; scaffold271 GLEAN mRNA 223097 226120 1 + . ID=CGI_10024461; scaffold271 WUBlastX LINE_L2 233360 233911 147 - . . scaffold271 GLEAN promoter 258492 259491 0.418119 + . ID=CGI_10024462; scaffold271 GLEAN mRNA 259492 265328 0.418119 + . ID=CGI_10024462; scaffold271 GLEAN promoter 268908 269907 1 + . ID=CGI_10024464; scaffold271 GLEAN mRNA 269052 269336 0.531613 - . ID=CGI_10024463; scaffold271 GLEAN promoter 269337 270336 0.531613 - . ID=CGI_10024463; scaffold271 GLEAN mRNA 269908 275400 1 + . ID=CGI_10024464; scaffold271 TRF Tandem_Repeat 274487 274569 53 + . . scaffold271 TRF Tandem_Repeat 274490 274569 74 + . . scaffold271 GLEAN mRNA 276378 282508 0.999653 - . ID=CGI_10024465; scaffold271 TRF Tandem_Repeat 278314 278596 332 + . . scaffold271 TRF Tandem_Repeat 278923 278974 79 + . . scaffold271 GLEAN promoter 282509 283508 0.999653 - . ID=CGI_10024465; scaffold271 GLEAN promoter 287596 288595 1 + . ID=CGI_10024466; scaffold271 GLEAN mRNA 288596 290251 1 + . ID=CGI_10024466; scaffold271 GLEAN mRNA 290699 291532 0.700775 - . ID=CGI_10024467; scaffold271 GLEAN promoter 291533 292532 0.700775 - . ID=CGI_10024467; scaffold271 GLEAN promoter 292986 293985 0.544852 + . ID=CGI_10024468; scaffold271 GLEAN mRNA 293986 299439 0.544852 + . ID=CGI_10024468; scaffold271 GLEAN mRNA 301334 321950 1 - . ID=CGI_10024469; scaffold271 TRF Tandem_Repeat 307846 308228 658 + . . scaffold271 TRF Tandem_Repeat 317605 318419 638 + . . scaffold271 TRF Tandem_Repeat 317928 318419 551 + . . scaffold271 GLEAN promoter 321165 322164 0.999676 + . ID=CGI_10024470; scaffold271 GLEAN promoter 321951 322950 1 - . ID=CGI_10024469; scaffold271 GLEAN mRNA 322165 333247 0.999676 + . ID=CGI_10024470; scaffold271 WUBlastX LINE_Penelope 341057 341560 30 + . . scaffold271 TRF Tandem_Repeat 350204 350245 50 + . . scaffold271 GLEAN promoter 359008 360007 0.33399 + . ID=CGI_10024471; scaffold271 GLEAN mRNA 360008 371496 0.33399 + . ID=CGI_10024471; scaffold271 WUBlastX DNA_MuDR 366787 367122 23 + . . scaffold271 GLEAN mRNA 375523 380391 1 - . ID=CGI_10024472; scaffold271 TRF Tandem_Repeat 377003 377274 212 + . . scaffold271 TRF Tandem_Repeat 377003 377274 256 + . . scaffold271 GLEAN promoter 380392 381391 1 - . ID=CGI_10024472; scaffold271 GLEAN mRNA 385302 388395 1 - . ID=CGI_10024473; scaffold271 TRF Tandem_Repeat 386758 387009 263 + . . scaffold271 TRF Tandem_Repeat 386758 387009 307 + . . scaffold271 GLEAN promoter 388396 389395 1 - . ID=CGI_10024473; scaffold271 TRF Tandem_Repeat 394079 394140 124 + . . scaffold271 GLEAN mRNA 394793 401964 1 - . ID=CGI_10024474; scaffold271 GLEAN promoter 401965 402964 1 - . ID=CGI_10024474; scaffold271 TRF Tandem_Repeat 409989 410071 166 + . . scaffold271 TRF Tandem_Repeat 410099 410135 74 + . . scaffold271 GLEAN promoter 412292 413291 1 + . ID=CGI_10024475; scaffold271 TRF Tandem_Repeat 413159 413199 82 + . . scaffold271 GLEAN mRNA 413292 418106 1 + . ID=CGI_10024475; scaffold271 GLEAN promoter 423803 424802 0.998364 + . ID=CGI_10024476; scaffold271 GLEAN mRNA 424803 426524 0.998364 + . ID=CGI_10024476; scaffold271 TRF Tandem_Repeat 426912 427654 1107 + . . scaffold271 GLEAN mRNA 431230 438349 1 - . ID=CGI_10024477; scaffold271 WUBlastX DNA_IS4EU 431254 431331 51 - . . scaffold271 GLEAN promoter 438350 439349 1 - . ID=CGI_10024477; scaffold271 GLEAN promoter 439505 440504 0.999347 + . ID=CGI_10024478; scaffold271 GLEAN mRNA 440505 453452 0.999347 + . ID=CGI_10024478; scaffold271 TRF Tandem_Repeat 442791 443105 402 + . . scaffold271 TRF Tandem_Repeat 442791 443102 390 + . . scaffold271 TRF Tandem_Repeat 448417 448742 492 + . . scaffold271 GLEAN promoter 455871 456870 1 + . ID=CGI_10024479; scaffold271 GLEAN mRNA 456871 458666 1 + . ID=CGI_10024479; scaffold271 TRF Tandem_Repeat 459737 459774 60 + . . scaffold271 TRF Tandem_Repeat 459912 460791 1309 + . . scaffold271 GLEAN mRNA 463198 465556 0.897881 - . ID=CGI_10024480; scaffold271 GLEAN promoter 463916 464915 0.986559 + . ID=CGI_10024481; scaffold271 GLEAN mRNA 464916 481925 0.986559 + . ID=CGI_10024481; scaffold271 GLEAN promoter 465557 466556 0.897881 - . ID=CGI_10024480; scaffold271 WUBlastX LINE_L1-Tx1 469276 469476 20 - . . scaffold271 WUBlastX LINE_L1-Tx1 469491 469562 20 - . . scaffold271 WUBlastX LINE_L1 469515 469586 28 - . . scaffold271 WUBlastX LINE_L1 470374 470874 35 - . . scaffold271 WUBlastX LINE_L1-Tx1 470542 470874 43 - . . scaffold271 WUBlastX LINE_L1-Tx1 470602 470874 65 - . . scaffold271 WUBlastX LINE_L1-Tx1 470900 471244 28 - . . scaffold271 WUBlastX LINE_L1 470981 471250 29 - . . scaffold271 WUBlastX LINE_L1-Tx1 471220 471414 47 - . . scaffold271 WUBlastX LINE_L1-Tx1 471244 471480 27 - . . scaffold271 WUBlastX LINE_L1-Tx1 471253 471414 54 - . . scaffold271 TRF Tandem_Repeat 473819 473950 95 + . . scaffold271 WUBlastX LINE_L2 475704 476147 70 + . . scaffold271 WUBlastX LINE_CR1-L2 476155 476328 70 + . . scaffold271 WUBlastX LINE_L2 476253 476999 228 + . . scaffold271 WUBlastX LINE_CR1-L2 476421 476987 403 + . . scaffold271 WUBlastX LINE_CR1-L2 476956 477714 273 + . . scaffold271 WUBlastX LINE_CR1-L2 477516 477794 106 + . . scaffold271 WUBlastX LINE_CR1-L2 477537 477842 31 + . . scaffold271 GLEAN promoter 486379 487378 0.992976 + . ID=CGI_10024482; scaffold271 GLEAN mRNA 487379 491547 0.992976 + . ID=CGI_10024482; scaffold271 GLEAN promoter 491415 492414 1 + . ID=CGI_10024483; scaffold271 TRF Tandem_Repeat 491859 491894 56 + . . scaffold271 GLEAN mRNA 492415 496434 1 + . ID=CGI_10024483; scaffold271 TRF Tandem_Repeat 498127 498152 52 + . . scaffold271 GLEAN promoter 540725 541724 0.9187 + . ID=CGI_10024484; scaffold271 GLEAN mRNA 541725 545783 0.9187 + . ID=CGI_10024484; scaffold271 GLEAN mRNA 545721 552080 0.791373 - . ID=CGI_10024485; scaffold271 GLEAN promoter 552081 553080 0.791373 - . ID=CGI_10024485; scaffold271 GLEAN mRNA 553183 577079 0.740081 - . ID=CGI_10024486; scaffold271 TRF Tandem_Repeat 553767 553857 173 + . . scaffold271 TRF Tandem_Repeat 560041 560147 126 + . . scaffold271 TRF Tandem_Repeat 565935 566672 1236 + . . scaffold271 GLEAN promoter 577080 578079 0.740081 - . ID=CGI_10024486; scaffold271 GLEAN mRNA 579359 582324 0.999922 - . ID=CGI_10024487; scaffold271 GLEAN promoter 582325 583324 0.999922 - . ID=CGI_10024487; scaffold271 TRF Tandem_Repeat 589922 589988 134 + . . scaffold271 GLEAN promoter 594194 595193 0.999729 + . ID=CGI_10024488; scaffold271 GLEAN mRNA 595194 601126 0.999729 + . ID=CGI_10024488; scaffold271 TRF Tandem_Repeat 605963 606014 104 + . . scaffold271 TRF Tandem_Repeat 606328 606743 672 + . . scaffold271 GLEAN mRNA 607376 610863 1 - . ID=CGI_10024489; scaffold271 GLEAN promoter 610864 611863 1 - . ID=CGI_10024489; scaffold271 GLEAN promoter 611337 612336 1 + . ID=CGI_10024490; scaffold271 GLEAN mRNA 612337 614014 1 + . ID=CGI_10024490; scaffold271 GLEAN mRNA 614496 618235 0.999676 - . ID=CGI_10024491; scaffold271 GLEAN promoter 617593 618592 0.999204 + . ID=CGI_10024492; scaffold271 GLEAN promoter 618236 619235 0.999676 - . ID=CGI_10024491; scaffold271 GLEAN mRNA 618593 645366 0.999204 + . ID=CGI_10024492; scaffold271 WUBlastX LINE_RTE-X 645585 645791 37 - . . scaffold271 GLEAN mRNA 653094 660602 0.530942 - . ID=CGI_10024493; scaffold271 TRF Tandem_Repeat 654506 654560 76 + . . scaffold271 TRF Tandem_Repeat 654514 654551 58 + . . scaffold271 GLEAN promoter 660603 661602 0.530942 - . ID=CGI_10024493; scaffold271 GLEAN promoter 664400 665399 0.999368 + . ID=CGI_10024494; scaffold271 GLEAN mRNA 665400 686464 0.999368 + . ID=CGI_10024494; scaffold271 TRF Tandem_Repeat 680798 680866 59 + . . scaffold271 TRF Tandem_Repeat 713922 713984 108 + . . scaffold271 TRF Tandem_Repeat 714075 714099 50 + . . scaffold271 TRF Tandem_Repeat 714097 714149 106 + . . scaffold271 WUBlastX LINE_RTE-X 717266 717631 63 - . . scaffold271 TRF Tandem_Repeat 744632 744685 99 + . . scaffold271 GLEAN mRNA 780567 782249 0.988234 - . ID=CGI_10024495; scaffold271 WUBlastX LTR_Copia 780894 781784 33 - . . scaffold271 WUBlastX LTR_Gypsy 781080 781913 48 - . . scaffold271 WUBlastX LTR_Gypsy-Cigr 781158 781850 170 - . . scaffold271 GLEAN promoter 782250 783249 0.988234 - . ID=CGI_10024495; scaffold271 GLEAN promoter 784468 785467 0.999995 + . ID=CGI_10024496; scaffold271 GLEAN promoter 784794 785793 0.997612 + . ID=CGI_10024497; scaffold271 GLEAN promoter 785036 786035 0.998236 + . ID=CGI_10024498; scaffold271 GLEAN mRNA 785468 785722 0.999995 + . ID=CGI_10024496; scaffold271 GLEAN mRNA 785794 785997 0.997612 + . ID=CGI_10024497; scaffold271 GLEAN mRNA 786036 787005 0.998236 + . ID=CGI_10024498; scaffold271 GLEAN mRNA 809860 849502 0.997113 - . ID=CGI_10024500; scaffold271 TRF Tandem_Repeat 810316 810397 67 + . . scaffold271 TRF Tandem_Repeat 810360 810421 88 + . . scaffold271 TRF Tandem_Repeat 811135 811227 107 + . . scaffold271 TRF Tandem_Repeat 825357 825392 63 + . . scaffold271 WUBlastX DNA_Harbinger 830367 830684 98 - . . scaffold271 WUBlastX LINE_RTE-X 831686 832177 183 - . . scaffold271 WUBlastX LINE_RTE-X 832126 832254 25 - . . scaffold271 GLEAN promoter 832226 833225 0.51616 + . ID=CGI_10024501; scaffold271 GLEAN mRNA 833226 854564 0.51616 + . ID=CGI_10024501; scaffold271 WUBlastX DNA_Zator 842746 842949 76 - . . scaffold271 TRF Tandem_Repeat 848105 848226 70 + . . scaffold271 GLEAN promoter 849503 850502 0.997113 - . ID=CGI_10024500; scaffold271 GLEAN mRNA 857286 859024 0.999995 - . ID=CGI_10024502; scaffold271 GLEAN promoter 859025 860024 0.999995 - . ID=CGI_10024502; scaffold271 TRF Tandem_Repeat 859436 859516 126 + . . scaffold271 WUBlastX DNA_PiggyBac 861869 861964 71 - . . scaffold271 TRF Tandem_Repeat 862743 862798 58 + . . scaffold271 TRF Tandem_Repeat 862743 862805 80 + . . scaffold271 WUBlastX DNA_MuDR 868076 869968 172 + . . scaffold271 TRF Tandem_Repeat 898697 898746 84 + . . scaffold271 TRF Tandem_Repeat 901227 901277 102 + . . scaffold271 TRF Tandem_Repeat 904103 904167 82 + . . scaffold271 TRF Tandem_Repeat 904103 904168 107 + . . scaffold271 TRF Tandem_Repeat 913881 913920 80 + . . scaffold271 TRF Tandem_Repeat 914004 914312 387 + . . scaffold271 TRF Tandem_Repeat 917111 917160 66 + . . scaffold271 TRF Tandem_Repeat 924806 924880 60 + . . scaffold271 TRF Tandem_Repeat 925789 926034 359 + . . scaffold271 GLEAN mRNA 934908 936641 0.999661 - . ID=CGI_10024504; scaffold271 GLEAN promoter 936642 937641 0.999661 - . ID=CGI_10024504; scaffold271 TRF Tandem_Repeat 936721 936782 124 + . . scaffold271 WUBlastX LINE_RTE-X 937485 937694 87 - . . scaffold271 WUBlastX LINE_RTE-X 937503 937757 26 - . . scaffold271 WUBlastX LINE_RTE-X 937727 937876 20 - . . scaffold271 WUBlastX LINE_RTE-X 937993 938658 157 - . . scaffold271 WUBlastX LINE_RTE-X 938631 939293 173 - . . scaffold271 WUBlastX LINE_RTE-X 938766 939293 398 - . . scaffold271 WUBlastX LINE_Jockey 938793 939401 97 - . . scaffold271 WUBlastX LINE_L1-Tx1 940149 940244 21 - . . scaffold271 TRF Tandem_Repeat 943499 943558 75 + . . scaffold271 WUBlastX LTR_Pao 943560 943628 32 - . . scaffold271 WUBlastX LTR_Pao 943566 943820 25 - . . scaffold271 WUBlastX LTR_Pao 943671 944258 373 - . . scaffold271 WUBlastX LTR_Pao 944254 944991 215 - . . scaffold271 WUBlastX LTR_Pao 944897 945712 116 - . . scaffold271 WUBlastX LTR_Pao 945299 945712 154 - . . scaffold271 TRF Tandem_Repeat 947945 947987 86 + . . scaffold272 GLEAN promoter 1 398 0.555898 + . ID=CGI_10003053; scaffold272 GLEAN mRNA 399 2072 0.555898 + . ID=CGI_10003053; scaffold272 WUBlastX LINE_L2 819 1061 24 + . . scaffold272 TRF Tandem_Repeat 3200 3253 90 + . . scaffold272 TRF Tandem_Repeat 5067 5113 78 + . . scaffold272 TRF Tandem_Repeat 6099 7513 2208 + . . scaffold272 TRF Tandem_Repeat 6099 7513 2125 + . . scaffold272 TRF Tandem_Repeat 9566 9627 124 + . . scaffold272 TRF Tandem_Repeat 16335 16411 109 + . . scaffold272 TRF Tandem_Repeat 16913 16957 90 + . . scaffold272 GLEAN promoter 19581 20580 0.999999 + . ID=CGI_10003054; scaffold272 GLEAN promoter 20034 21033 0.747148 + . ID=CGI_10003055; scaffold272 GLEAN mRNA 20581 21009 0.999999 + . ID=CGI_10003054; scaffold272 GLEAN mRNA 21034 21723 0.747148 + . ID=CGI_10003055; scaffold272 GLEAN promoter 22194 23193 0.996551 + . ID=CGI_10003056; scaffold272 GLEAN mRNA 23194 24864 0.996551 + . ID=CGI_10003056; scaffold272 TRF Tandem_Repeat 26193 26265 119 + . . scaffold272 TRF Tandem_Repeat 30550 30592 86 + . . scaffold272 GLEAN promoter 31744 32743 0.999882 + . ID=CGI_10003057; scaffold272 GLEAN mRNA 32744 62954 0.999882 + . ID=CGI_10003057; scaffold272 TRF Tandem_Repeat 37468 37510 86 + . . scaffold272 TRF Tandem_Repeat 38540 38570 62 + . . scaffold272 TRF Tandem_Repeat 38818 38905 158 + . . scaffold272 WUBlastX LINE_L2 45158 45787 91 + . . scaffold272 WUBlastX LINE_L2 45326 45781 157 + . . scaffold272 WUBlastX LINE_L2 45446 46153 58 + . . scaffold272 WUBlastX LINE_L2 45847 46089 72 + . . scaffold272 WUBlastX LINE_CR1-L2 46182 46340 37 + . . scaffold272 TRF Tandem_Repeat 48426 48482 114 + . . scaffold272 TRF Tandem_Repeat 48867 48917 57 + . . scaffold272 TRF Tandem_Repeat 61106 61174 138 + . . scaffold27274 GLEAN promoter 1685 2684 0.999994 + . ID=CGI_10000342; scaffold27274 GLEAN mRNA 2685 3906 0.999994 + . ID=CGI_10000342; scaffold273 GLEAN promoter 1 112 1 + . ID=CGI_10006601; scaffold273 GLEAN mRNA 113 8475 1 + . ID=CGI_10006601; scaffold273 GLEAN mRNA 15582 16190 0.481548 - . ID=CGI_10006602; scaffold273 GLEAN promoter 16191 17190 0.481548 - . ID=CGI_10006602; scaffold273 TRF Tandem_Repeat 30700 30874 296 + . . scaffold273 TRF Tandem_Repeat 30875 30947 83 + . . scaffold273 TRF Tandem_Repeat 31844 31912 52 + . . scaffold273 TRF Tandem_Repeat 33330 33398 52 + . . scaffold273 TRF Tandem_Repeat 42865 42923 118 + . . scaffold273 TRF Tandem_Repeat 43214 43292 158 + . . scaffold273 TRF Tandem_Repeat 43326 43367 84 + . . scaffold273 TRF Tandem_Repeat 46970 47067 151 + . . scaffold273 GLEAN promoter 50339 51338 1 + . ID=CGI_10006603; scaffold273 GLEAN mRNA 51339 53415 1 + . ID=CGI_10006603; scaffold273 GLEAN promoter 55000 55999 1 + . ID=CGI_10006604; scaffold273 GLEAN mRNA 56000 57189 1 + . ID=CGI_10006604; scaffold273 TRF Tandem_Repeat 61843 62021 78 + . . scaffold273 WUBlastX LINE_RTE-X 95277 96908 509 + . . scaffold273 WUBlastX LINE_RTE-X 95784 96914 525 + . . scaffold273 WUBlastX LINE_RTE-X 96920 98101 602 + . . scaffold273 GLEAN mRNA 104402 131353 0.694752 - . ID=CGI_10006605; scaffold273 TRF Tandem_Repeat 108657 108692 63 + . . scaffold273 TRF Tandem_Repeat 108740 108831 150 + . . scaffold273 TRF Tandem_Repeat 113784 113946 210 + . . scaffold273 GLEAN promoter 131354 132353 0.694752 - . ID=CGI_10006605; scaffold273 GLEAN mRNA 140055 151688 0.777738 - . ID=CGI_10006606; scaffold273 TRF Tandem_Repeat 145415 145649 195 + . . scaffold273 TRF Tandem_Repeat 146163 146547 646 + . . scaffold273 TRF Tandem_Repeat 148698 148787 137 + . . scaffold273 GLEAN promoter 151689 152688 0.777738 - . ID=CGI_10006606; scaffold27302 GLEAN mRNA 2101 2907 1 - . ID=CGI_10000353; scaffold27302 GLEAN promoter 2908 3907 1 - . ID=CGI_10000353; scaffold27302 GLEAN mRNA 3887 4274 1 - . ID=CGI_10000354; scaffold27302 GLEAN promoter 4275 4576 1 - . ID=CGI_10000354; scaffold274 WUBlastX LINE_L1-Tx1 148 270 32 + . . scaffold274 TRF Tandem_Repeat 3729 3825 122 + . . scaffold274 TRF Tandem_Repeat 3842 3899 57 + . . scaffold274 GLEAN promoter 6973 7972 0.969644 + . ID=CGI_10017007; scaffold274 GLEAN mRNA 7973 9852 0.969644 + . ID=CGI_10017007; scaffold274 TRF Tandem_Repeat 11653 11727 89 + . . scaffold274 TRF Tandem_Repeat 11653 11730 99 + . . scaffold274 WUBlastX DNA_IS4EU 20501 21292 454 + . . scaffold274 WUBlastX DNA_IS4EU 21312 21446 72 + . . scaffold274 WUBlastX DNA_IS4EU 23532 23945 48 - . . scaffold274 WUBlastX LINE_RTE-X 24685 24972 72 - . . scaffold274 WUBlastX LINE_RTE-X 24730 24972 88 - . . scaffold274 WUBlastX LINE_RTE-X 24796 25029 53 - . . scaffold274 GLEAN promoter 30807 31806 0.990803 + . ID=CGI_10017008; scaffold274 GLEAN mRNA 31807 34983 0.990803 + . ID=CGI_10017008; scaffold274 WUBlastX LINE_Penelope 34001 34348 84 - . . scaffold274 WUBlastX LINE_Penelope 34079 34354 92 - . . scaffold274 WUBlastX LINE_Penelope 34097 34417 89 - . . scaffold274 WUBlastX LINE_Penelope 34133 34504 68 - . . scaffold274 TRF Tandem_Repeat 38638 38696 118 + . . scaffold274 TRF Tandem_Repeat 40534 40618 170 + . . scaffold274 WUBlastX LINE_RTE-X 45462 45833 55 - . . scaffold274 WUBlastX LINE_RTE-X 45829 46371 292 - . . scaffold274 WUBlastX LINE_CR1 46968 47042 25 - . . scaffold274 GLEAN mRNA 47250 68838 0.971857 - . ID=CGI_10017009; scaffold274 WUBlastX LINE_L2 47572 48198 143 + . . scaffold274 WUBlastX LINE_L1 47803 48192 197 + . . scaffold274 WUBlastX DNA_En-Spm 52024 53325 199 - . . scaffold274 WUBlastX DNA_En-Spm 52447 53223 238 - . . scaffold274 WUBlastX DNA_En-Spm 52618 53469 295 - . . scaffold274 WUBlastX DNA_En-Spm 53113 54228 302 - . . scaffold274 WUBlastX DNA_En-Spm 53929 54348 25 - . . scaffold274 TRF Tandem_Repeat 54349 54378 60 + . . scaffold274 GLEAN promoter 54640 55639 0.805758 + . ID=CGI_10017010; scaffold274 GLEAN mRNA 55640 59317 0.805758 + . ID=CGI_10017010; scaffold274 TRF Tandem_Repeat 66506 66595 171 + . . scaffold274 GLEAN promoter 68220 69219 0.999351 + . ID=CGI_10017011; scaffold274 GLEAN promoter 68839 69838 0.971857 - . ID=CGI_10017009; scaffold274 GLEAN mRNA 69220 76353 0.999351 + . ID=CGI_10017011; scaffold274 TRF Tandem_Repeat 71034 71078 81 + . . scaffold274 TRF Tandem_Repeat 71034 71081 60 + . . scaffold274 TRF Tandem_Repeat 77018 77156 83 + . . scaffold274 TRF Tandem_Repeat 77401 77498 85 + . . scaffold274 TRF Tandem_Repeat 78174 79162 1502 + . . scaffold274 TRF Tandem_Repeat 84175 84221 94 + . . scaffold274 TRF Tandem_Repeat 85107 85211 183 + . . scaffold274 WUBlastX LTR_DIRS 86580 87392 560 - . . scaffold274 WUBlastX LTR_DIRS 87367 88101 391 - . . scaffold274 WUBlastX LTR_DIRS 87400 87966 405 - . . scaffold274 WUBlastX LTR_DIRS 88119 88982 242 - . . scaffold274 TRF Tandem_Repeat 89310 89424 83 + . . scaffold274 GLEAN promoter 94858 95857 1 + . ID=CGI_10017012; scaffold274 GLEAN mRNA 95858 96963 1 + . ID=CGI_10017012; scaffold274 TRF Tandem_Repeat 106003 106257 126 + . . scaffold274 GLEAN promoter 109645 110644 0.999675 + . ID=CGI_10017013; scaffold274 GLEAN mRNA 110645 138083 0.999675 + . ID=CGI_10017013; scaffold274 GLEAN mRNA 114872 127603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Gypsy 120427 120612 33 - . . scaffold274 WUBlastX LTR_Gypsy 120481 120570 44 - . . scaffold274 WUBlastX LTR_Gypsy 120495 121184 130 - . . scaffold274 WUBlastX LTR_Gypsy 120615 121142 199 - . . scaffold274 WUBlastX LTR_Gypsy 120699 121142 284 - . . scaffold274 WUBlastX LTR_Gypsy 120699 121241 268 - . . scaffold274 WUBlastX LTR_Gypsy 121189 121455 198 - . . scaffold274 WUBlastX LTR_Gypsy 121484 122536 546 - . . scaffold274 TRF Tandem_Repeat 125067 125454 275 + . . scaffold274 GLEAN promoter 127604 128603 0.900499 - . ID=CGI_10017014; scaffold274 WUBlastX LTR_Copia 135725 136540 417 + . . scaffold274 WUBlastX LTR_Copia 136010 136702 150 + . . scaffold274 TRF Tandem_Repeat 138528 139403 1318 + . . scaffold274 GLEAN promoter 138931 139930 1 + . ID=CGI_10017015; scaffold274 GLEAN mRNA 139931 143287 1 + . ID=CGI_10017015; scaffold274 GLEAN mRNA 145589 152123 0.84036 - . ID=CGI_10017016; scaffold274 GLEAN promoter 152124 153123 0.84036 - . ID=CGI_10017016; scaffold274 GLEAN promoter 159818 160817 0.801517 + . ID=CGI_10017017; scaffold274 GLEAN mRNA 160818 162354 0.801517 + . ID=CGI_10017017; scaffold274 GLEAN mRNA 170046 176230 1 - . ID=CGI_10017018; scaffold274 TRF Tandem_Repeat 172987 173051 130 + . . scaffold274 GLEAN promoter 176231 177230 1 - . ID=CGI_10017018; scaffold274 TRF Tandem_Repeat 176821 176878 116 + . . scaffold274 TRF Tandem_Repeat 194718 194748 53 + . . scaffold274 GLEAN mRNA 198563 208330 0.999676 - . ID=CGI_10017019; scaffold274 TRF Tandem_Repeat 202766 202804 78 + . . scaffold274 GLEAN promoter 203944 204943 1 + . ID=CGI_10017020; scaffold274 GLEAN mRNA 204944 205757 1 + . ID=CGI_10017020; scaffold274 GLEAN promoter 207406 208405 0.999999 + . ID=CGI_10017021; scaffold274 GLEAN promoter 208331 209330 0.999676 - . ID=CGI_10017019; scaffold274 GLEAN mRNA 208406 211576 0.999999 + . ID=CGI_10017021; scaffold274 TRF Tandem_Repeat 209807 209867 122 + . . scaffold274 GLEAN mRNA 214711 232751 0.519806 - . ID=CGI_10017022; scaffold274 GLEAN promoter 218406 219405 0.999998 + . ID=CGI_10017023; scaffold274 GLEAN mRNA 219406 221451 0.999998 + . ID=CGI_10017023; scaffold274 GLEAN promoter 232752 233751 0.519806 - . ID=CGI_10017022; scaffold274 GLEAN promoter 234326 235325 0.491585 + . ID=CGI_10017024; scaffold274 GLEAN mRNA 235326 240921 0.491585 + . ID=CGI_10017024; scaffold274 TRF Tandem_Repeat 237395 237481 95 + . . scaffold274 TRF Tandem_Repeat 237565 237723 210 + . . scaffold274 TRF Tandem_Repeat 237791 237889 101 + . . scaffold274 GLEAN promoter 243196 244195 0.5 + . ID=CGI_10017025; scaffold274 GLEAN mRNA 244196 247079 0.5 + . ID=CGI_10017025; scaffold274 GLEAN mRNA 245795 251004 0.885714 - . ID=CGI_10017026; scaffold274 GLEAN promoter 251005 252004 0.885714 - . ID=CGI_10017026; scaffold274 GLEAN mRNA 251380 254832 0.453662 - . ID=CGI_10017027; scaffold274 GLEAN promoter 254833 255832 0.453662 - . ID=CGI_10017027; scaffold274 GLEAN mRNA 255092 256494 0.987403 - . ID=CGI_10017028; scaffold274 GLEAN promoter 256495 257494 0.987403 - . ID=CGI_10017028; scaffold274 TRF Tandem_Repeat 256560 256602 86 + . . scaffold274 GLEAN mRNA 256631 259516 0.888338 - . ID=CGI_10017029; scaffold274 GLEAN promoter 259517 260516 0.888338 - . ID=CGI_10017029; scaffold274 TRF Tandem_Repeat 265027 265062 63 + . . scaffold274 TRF Tandem_Repeat 267369 267399 53 + . . scaffold274 GLEAN mRNA 268437 284777 1 - . ID=CGI_10017030; scaffold274 TRF Tandem_Repeat 268717 268750 68 + . . scaffold274 TRF Tandem_Repeat 277454 277491 60 + . . scaffold274 GLEAN promoter 284778 285777 1 - . ID=CGI_10017030; scaffold274 GLEAN promoter 284951 285950 1 + . ID=CGI_10017031; scaffold274 GLEAN mRNA 285951 286990 1 + . ID=CGI_10017031; scaffold274 GLEAN promoter 286077 287076 0.999996 + . ID=CGI_10017032; scaffold274 GLEAN mRNA 287077 288396 0.999996 + . ID=CGI_10017032; scaffold274 TRF Tandem_Repeat 289119 289405 145 + . . scaffold274 WUBlastX DNA_Kolobok-IS4 307292 307447 28 + . . scaffold274 WUBlastX DNA_IS4EU 307459 307845 225 + . . scaffold274 WUBlastX DNA_Kolobok-IS4 308063 308329 42 - . . scaffold274 WUBlastX DNA_IS4EU 308063 308260 44 - . . scaffold274 WUBlastX DNA_IS4EU 309195 309257 44 - . . scaffold274 GLEAN mRNA 314383 332434 0.926033 - . ID=CGI_10017033; scaffold274 TRF Tandem_Repeat 328824 328907 134 + . . scaffold274 GLEAN promoter 332435 333434 0.926033 - . ID=CGI_10017033; scaffold274 TRF Tandem_Repeat 332783 332838 71 + . . scaffold274 TRF Tandem_Repeat 339098 339139 59 + . . scaffold274 TRF Tandem_Repeat 339609 339653 90 + . . scaffold274 TRF Tandem_Repeat 339815 339913 92 + . . scaffold274 TRF Tandem_Repeat 349602 349740 115 + . . scaffold274 TRF Tandem_Repeat 356614 356716 80 + . . scaffold274 TRF Tandem_Repeat 362014 362049 54 + . . scaffold274 WUBlastX LTR_Gypsy 362786 363175 184 + . . scaffold274 WUBlastX LTR_Gypsy 362792 363301 148 + . . scaffold274 TRF Tandem_Repeat 364616 364650 70 + . . scaffold274 TRF Tandem_Repeat 366234 366313 142 + . . scaffold274 WUBlastX DNA_IS4EU 367264 367431 85 - . . scaffold274 WUBlastX DNA_IS4EU 367267 367467 67 - . . scaffold274 WUBlastX DNA_IS4EU 367505 367654 88 - . . scaffold274 WUBlastX DNA_Kolobok-IS4 367695 367946 69 - . . scaffold274 TRF Tandem_Repeat 370458 370660 182 + . . scaffold274 TRF Tandem_Repeat 407798 407831 59 + . . scaffold274 WUBlastX DNA_P 414076 414162 21 - . . scaffold274 WUBlastX DNA_P 414270 414977 85 - . . scaffold274 WUBlastX DNA_P 414453 415931 210 - . . scaffold274 TRF Tandem_Repeat 416466 416500 70 + . . scaffold274 TRF Tandem_Repeat 417617 417658 50 + . . scaffold274 WUBlastX LTR_Gypsy-Cigr 417932 418708 516 + . . scaffold274 WUBlastX LTR_Gypsy-Cigr 418696 418893 142 + . . scaffold274 WUBlastX LTR_Gypsy 418759 418968 50 + . . scaffold274 WUBlastX LTR_DIRS 421618 422103 135 + . . scaffold274 TRF Tandem_Repeat 424885 424918 59 + . . scaffold274 TRF Tandem_Repeat 440490 440535 92 + . . scaffold274 TRF Tandem_Repeat 440801 440832 64 + . . scaffold274 GLEAN mRNA 442893 461703 0.999674 - . ID=CGI_10017036; scaffold274 TRF Tandem_Repeat 461222 461267 58 + . . scaffold274 TRF Tandem_Repeat 461306 461355 55 + . . scaffold274 GLEAN promoter 461704 462703 0.999674 - . ID=CGI_10017036; scaffold274 TRF Tandem_Repeat 462299 462347 89 + . . scaffold274 GLEAN mRNA 466129 475801 0.973255 - . ID=CGI_10017037; scaffold274 TRF Tandem_Repeat 470071 470179 200 + . . scaffold274 TRF Tandem_Repeat 471750 471811 115 + . . scaffold274 TRF Tandem_Repeat 473807 473918 170 + . . scaffold274 GLEAN promoter 475802 476801 0.973255 - . ID=CGI_10017037; scaffold274 GLEAN mRNA 476352 476774 1 - . ID=CGI_10017038; scaffold274 GLEAN promoter 476775 477774 1 - . ID=CGI_10017038; scaffold274 GLEAN mRNA 476798 477433 0.579787 - . ID=CGI_10017039; scaffold274 GLEAN promoter 477434 478433 0.579787 - . ID=CGI_10017039; scaffold274 TRF Tandem_Repeat 480973 481024 88 + . . scaffold274 TRF Tandem_Repeat 481452 481495 88 + . . scaffold274 WUBlastX LINE_RTE-X 486464 486730 45 + . . scaffold274 WUBlastX LINE_RTE-X 486733 487161 52 + . . scaffold274 TRF Tandem_Repeat 487353 487741 475 + . . scaffold274 TRF Tandem_Repeat 487355 487750 450 + . . scaffold274 TRF Tandem_Repeat 487355 487741 394 + . . scaffold274 TRF Tandem_Repeat 487768 487821 99 + . . scaffold274 TRF Tandem_Repeat 488435 488474 62 + . . scaffold274 TRF Tandem_Repeat 488492 488763 297 + . . scaffold274 TRF Tandem_Repeat 488500 488762 300 + . . scaffold27422 GLEAN promoter 1376 2375 1 + . ID=CGI_10000359; scaffold27422 GLEAN mRNA 2376 4397 1 + . ID=CGI_10000359; scaffold275 GLEAN promoter 6836 7835 0.368107 + . ID=CGI_10006823; scaffold275 GLEAN mRNA 7836 17115 0.368107 + . ID=CGI_10006823; scaffold275 TRF Tandem_Repeat 17750 17890 120 + . . scaffold275 TRF Tandem_Repeat 18885 18982 101 + . . scaffold275 TRF Tandem_Repeat 22384 22441 116 + . . scaffold275 GLEAN promoter 52255 53254 0.544684 + . ID=CGI_10006824; scaffold275 GLEAN mRNA 53255 58069 0.544684 + . ID=CGI_10006824; scaffold275 TRF Tandem_Repeat 56605 56698 118 + . . scaffold275 TRF Tandem_Repeat 58242 58332 137 + . . scaffold275 TRF Tandem_Repeat 63707 63758 104 + . . scaffold275 TRF Tandem_Repeat 63821 64218 656 + . . scaffold275 GLEAN promoter 66622 67621 0.837231 + . ID=CGI_10006825; scaffold275 GLEAN mRNA 67622 82560 0.837231 + . ID=CGI_10006825; scaffold275 TRF Tandem_Repeat 82665 82711 85 + . . scaffold275 TRF Tandem_Repeat 88450 88475 52 + . . scaffold275 TRF Tandem_Repeat 93670 93713 70 + . . scaffold275 TRF Tandem_Repeat 93671 93709 60 + . . scaffold275 TRF Tandem_Repeat 93720 94551 1110 + . . scaffold275 WUBlastX LINE_L2 114986 115036 27 + . . scaffold275 WUBlastX LINE_CR1 115423 115668 27 + . . scaffold275 WUBlastX LINE_CR1 115498 115653 31 + . . scaffold275 WUBlastX LINE_RTE-BovB 115552 115689 36 + . . scaffold275 WUBlastX LINE_RTE-X 115555 115671 67 + . . scaffold275 WUBlastX LINE_RTE-X 115691 115837 64 + . . scaffold275 WUBlastX LINE_RTE-X 115718 115843 79 + . . scaffold275 WUBlastX LINE_RTE-X 115816 116157 125 + . . scaffold275 WUBlastX LINE_RTE-BovB 116151 116276 26 + . . scaffold275 WUBlastX LINE_RTE-X 117060 117377 44 + . . scaffold275 WUBlastX LINE_RTE-X 117120 117395 93 + . . scaffold275 TRF Tandem_Repeat 123906 123942 65 + . . scaffold275 WUBlastX LTR_DIRS 126072 126293 45 + . . scaffold275 TRF Tandem_Repeat 128702 128855 87 + . . scaffold275 WUBlastX LTR_DIRS 129754 129930 57 + . . scaffold275 WUBlastX LTR_DIRS 130121 130240 57 - . . scaffold275 GLEAN mRNA 132248 137047 0.354636 - . ID=CGI_10006826; scaffold275 TRF Tandem_Repeat 136602 136677 107 + . . scaffold275 GLEAN promoter 137048 138047 0.354636 - . ID=CGI_10006826; scaffold275 WUBlastX LTR_Gypsy 146389 146814 69 - . . scaffold275 WUBlastX LTR_Gypsy 146485 146823 72 - . . scaffold275 WUBlastX LTR_Gypsy 146551 146850 92 - . . scaffold275 WUBlastX LTR_Gypsy 147645 147872 26 - . . scaffold275 WUBlastX LTR_Gypsy 147753 147887 38 - . . scaffold275 WUBlastX LTR_Gypsy 147827 148243 42 - . . scaffold275 WUBlastX LTR_Gypsy 147911 148072 67 - . . scaffold275 WUBlastX LTR_Gypsy 147938 148522 128 - . . scaffold275 WUBlastX LTR_Gypsy 148142 148546 147 - . . scaffold275 WUBlastX LTR_Gypsy 148244 148546 153 - . . scaffold275 WUBlastX LTR_Gypsy 148551 149174 120 - . . scaffold275 WUBlastX LTR_Gypsy 149582 149641 24 - . . scaffold275 WUBlastX LTR_Gypsy 149802 149888 23 - . . scaffold275 WUBlastX LTR_Gypsy 149802 149927 20 - . . scaffold275 WUBlastX LINE_L1-Tx1 153341 153520 62 + . . scaffold275 WUBlastX LINE_L1 153371 153535 74 + . . scaffold275 WUBlastX LINE_L1-Tx1 153698 153910 26 + . . scaffold275 GLEAN mRNA 160056 161341 0.993364 - . ID=CGI_10006827; scaffold275 GLEAN promoter 161342 162169 0.993364 - . ID=CGI_10006827; scaffold27582 GLEAN promoter 1623 2622 1 + . ID=CGI_10000371; scaffold27582 GLEAN mRNA 2623 4719 1 + . ID=CGI_10000371; scaffold276 GLEAN promoter 4257 5256 0.648919 + . ID=CGI_10006433; scaffold276 GLEAN mRNA 5257 9525 0.648919 + . ID=CGI_10006433; scaffold276 TRF Tandem_Repeat 8430 8470 73 + . . scaffold276 TRF Tandem_Repeat 20791 20840 100 + . . scaffold276 GLEAN promoter 23613 24612 0.999985 + . ID=CGI_10006434; scaffold276 GLEAN mRNA 24613 26343 0.999985 + . ID=CGI_10006434; scaffold276 WUBlastX DNA_IS4EU 24790 24924 54 + . . scaffold276 WUBlastX DNA_IS4EU 25631 25855 23 + . . scaffold276 WUBlastX DNA_IS4EU 26381 26596 31 + . . scaffold276 WUBlastX DNA_IS4EU 26420 26599 35 + . . scaffold276 WUBlastX DNA_IS4EU 26689 26925 83 + . . scaffold276 WUBlastX DNA_IS4EU 26722 27012 35 + . . scaffold276 WUBlastX DNA_IS4EU 27005 27292 73 + . . scaffold276 WUBlastX DNA_Kolobok-IS4 27014 27352 60 + . . scaffold276 WUBlastX DNA_IS4EU 27044 27274 97 + . . scaffold276 GLEAN mRNA 27405 34935 0.425332 - . ID=CGI_10006435; scaffold276 WUBlastX DNA_Kolobok-IS4 27408 28088 388 - . . scaffold276 WUBlastX DNA_IS4EU 28500 28679 36 - . . scaffold276 WUBlastX DNA_P 29613 29945 42 - . . scaffold276 WUBlastX DNA_P 29685 29957 45 - . . scaffold276 WUBlastX DNA_P 29781 29948 50 - . . scaffold276 WUBlastX DNA_P 29838 29954 53 - . . scaffold276 WUBlastX DNA_IS4EU 30469 30549 20 - . . scaffold276 WUBlastX DNA_Harbinger 33883 34017 32 - . . scaffold276 GLEAN promoter 34936 35935 0.425332 - . ID=CGI_10006435; scaffold276 GLEAN mRNA 38181 45711 0.597584 - . ID=CGI_10006436; scaffold276 TRF Tandem_Repeat 38469 39899 2214 + . . scaffold276 TRF Tandem_Repeat 43393 43443 95 + . . scaffold276 GLEAN promoter 45712 46711 0.597584 - . ID=CGI_10006436; scaffold276 WUBlastX LINE_RTE-X 46442 46777 56 + . . scaffold276 WUBlastX LINE_RTE-X 46660 47271 97 + . . scaffold276 TRF Tandem_Repeat 61669 61712 52 + . . scaffold276 GLEAN promoter 63688 64687 0.999914 + . ID=CGI_10006437; scaffold276 GLEAN mRNA 64688 64948 0.999914 + . ID=CGI_10006437; scaffold276 TRF Tandem_Repeat 73173 74535 1150 + . . scaffold276 GLEAN promoter 78885 79884 1 + . ID=CGI_10006438; scaffold276 GLEAN mRNA 79885 85290 1 + . ID=CGI_10006438; scaffold276 TRF Tandem_Repeat 80441 80481 82 + . . scaffold276 TRF Tandem_Repeat 85323 85421 121 + . . scaffold276 TRF Tandem_Repeat 87975 89512 2108 + . . scaffold276 TRF Tandem_Repeat 89674 89735 63 + . . scaffold276 TRF Tandem_Repeat 89674 89734 70 + . . scaffold276 GLEAN mRNA 90479 103703 0.999674 - . ID=CGI_10006439; scaffold276 TRF Tandem_Repeat 92941 92988 96 + . . scaffold276 GLEAN promoter 103704 104703 0.999674 - . ID=CGI_10006439; scaffold276 TRF Tandem_Repeat 106868 107019 100 + . . scaffold276 TRF Tandem_Repeat 106876 107019 79 + . . scaffold276 TRF Tandem_Repeat 106881 107012 88 + . . scaffold276 TRF Tandem_Repeat 106883 107019 107 + . . scaffold276 TRF Tandem_Repeat 115468 115517 100 + . . scaffold276 GLEAN promoter 116969 117968 0.998077 + . ID=CGI_10006440; scaffold276 GLEAN mRNA 117969 133337 0.998077 + . ID=CGI_10006440; scaffold276 TRF Tandem_Repeat 118433 118468 54 + . . scaffold276 TRF Tandem_Repeat 118601 118649 89 + . . scaffold276 TRF Tandem_Repeat 133639 133696 107 + . . scaffold276 TRF Tandem_Repeat 133910 133969 79 + . . scaffold276 TRF Tandem_Repeat 140640 140687 96 + . . scaffold276 TRF Tandem_Repeat 141977 142066 171 + . . scaffold276 WUBlastX RC_Helitron 144821 145123 76 - . . scaffold27654 GLEAN mRNA 1041 1996 0.999376 - . ID=CGI_10000367; scaffold27654 WUBlastX DNA_Crypton 1047 1442 29 - . . scaffold27654 GLEAN promoter 1371 2370 0.999068 + . ID=CGI_10000368; scaffold27654 GLEAN promoter 1997 2996 0.999376 - . ID=CGI_10000367; scaffold27654 WUBlastX DNA_IS4EU 2371 2682 54 + . . scaffold27654 GLEAN mRNA 2371 2694 0.999068 + . ID=CGI_10000368; scaffold27654 WUBlastX DNA_IS4EU 3401 3574 44 + . . scaffold27654 WUBlastX DNA_IS4EU 3685 4251 332 + . . scaffold27654 WUBlastX DNA_IS4EU 4249 4701 326 + . . scaffold277 GLEAN promoter 1 387 1 + . ID=CGI_10001632; scaffold277 GLEAN mRNA 388 8683 1 + . ID=CGI_10001632; scaffold277 GLEAN mRNA 14550 16906 1 - . ID=CGI_10001633; scaffold277 GLEAN promoter 16907 17906 1 - . ID=CGI_10001633; scaffold27740 GLEAN mRNA 2985 3960 1 - . ID=CGI_10000380; scaffold27740 GLEAN promoter 3961 4921 1 - . ID=CGI_10000380; scaffold278 TRF Tandem_Repeat 2071 2112 84 + . . scaffold278 TRF Tandem_Repeat 6713 6749 74 + . . scaffold278 TRF Tandem_Repeat 7550 7606 114 + . . scaffold278 TRF Tandem_Repeat 11662 12519 1430 + . . scaffold278 TRF Tandem_Repeat 13102 13171 140 + . . scaffold278 GLEAN promoter 22995 23994 0.999144 + . ID=CGI_10005565; scaffold278 GLEAN mRNA 23995 24900 0.999144 + . ID=CGI_10005565; scaffold278 TRF Tandem_Repeat 26474 26499 52 + . . scaffold278 GLEAN mRNA 28831 29874 0.99172 - . ID=CGI_10005566; scaffold278 GLEAN promoter 29875 30874 0.99172 - . ID=CGI_10005566; scaffold278 WUBlastX LTR_Gypsy 32655 33155 73 - . . scaffold278 WUBlastX LTR_Gypsy 32802 33434 281 - . . scaffold278 WUBlastX LTR_Gypsy 32961 34097 1092 - . . scaffold278 WUBlastX LINE_RTE-X 36198 37253 227 + . . scaffold278 GLEAN mRNA 38301 45198 1 - . ID=CGI_10005567; scaffold278 TRF Tandem_Repeat 43006 43285 377 + . . scaffold278 TRF Tandem_Repeat 44228 44907 603 + . . scaffold278 TRF Tandem_Repeat 44234 44907 573 + . . scaffold278 GLEAN promoter 45199 46198 1 - . ID=CGI_10005567; scaffold278 TRF Tandem_Repeat 49449 50052 1154 + . . scaffold278 TRF Tandem_Repeat 49449 50052 848 + . . scaffold278 TRF Tandem_Repeat 52081 52208 247 + . . scaffold278 GLEAN promoter 53742 54741 0.924231 + . ID=CGI_10005568; scaffold278 GLEAN mRNA 54742 58856 0.924231 + . ID=CGI_10005568; scaffold278 GLEAN mRNA 60225 63440 0.99967 - . ID=CGI_10005569; scaffold278 TRF Tandem_Repeat 62589 62978 512 + . . scaffold278 GLEAN promoter 63441 64440 0.99967 - . ID=CGI_10005569; scaffold278 GLEAN promoter 69447 70446 0.375299 + . ID=CGI_10005570; scaffold278 GLEAN mRNA 70447 88940 0.375299 + . ID=CGI_10005570; scaffold278 TRF Tandem_Repeat 73592 75436 1198 + . . scaffold278 TRF Tandem_Repeat 76047 76194 215 + . . scaffold278 TRF Tandem_Repeat 80802 80939 249 + . . scaffold278 TRF Tandem_Repeat 84102 84130 58 + . . scaffold278 GLEAN mRNA 92679 104150 0.92442 - . ID=CGI_10005571; scaffold278 TRF Tandem_Repeat 96145 96240 74 + . . scaffold278 GLEAN promoter 104151 105150 0.92442 - . ID=CGI_10005571; scaffold278 TRF Tandem_Repeat 107639 107679 82 + . . scaffold278 TRF Tandem_Repeat 108431 108471 82 + . . scaffold278 GLEAN mRNA 120385 122113 0.911812 - . ID=CGI_10005572; scaffold278 TRF Tandem_Repeat 121172 121264 109 + . . scaffold278 GLEAN promoter 122114 123113 0.911812 - . ID=CGI_10005572; scaffold278 GLEAN mRNA 124547 128467 0.99999 - . ID=CGI_10005573; scaffold278 GLEAN promoter 128468 129467 0.99999 - . ID=CGI_10005573; scaffold278 TRF Tandem_Repeat 128529 128835 446 + . . scaffold27810 WUBlastX DNA_Harbinger 3536 3685 65 + . . scaffold27856 GLEAN mRNA 161 805 1 - . ID=CGI_10000391; scaffold27856 GLEAN promoter 806 1805 1 - . ID=CGI_10000391; scaffold27856 GLEAN mRNA 876 3899 0.997957 - . ID=CGI_10000392; scaffold27856 GLEAN promoter 3900 4899 0.997957 - . ID=CGI_10000392; scaffold279 TRF Tandem_Repeat 4648 4691 88 + . . scaffold279 TRF Tandem_Repeat 5210 5269 111 + . . scaffold279 TRF Tandem_Repeat 5882 5931 100 + . . scaffold279 TRF Tandem_Repeat 5988 6017 60 + . . scaffold279 TRF Tandem_Repeat 10867 10891 50 + . . scaffold279 TRF Tandem_Repeat 14031 14209 270 + . . scaffold279 TRF Tandem_Repeat 17982 18018 74 + . . scaffold279 TRF Tandem_Repeat 18348 18476 81 + . . scaffold279 TRF Tandem_Repeat 18348 18447 92 + . . scaffold279 TRF Tandem_Repeat 24129 24195 71 + . . scaffold279 TRF Tandem_Repeat 25370 25467 88 + . . scaffold279 TRF Tandem_Repeat 26073 26189 56 + . . scaffold279 TRF Tandem_Repeat 26088 26308 133 + . . scaffold279 TRF Tandem_Repeat 28957 29013 114 + . . scaffold279 GLEAN mRNA 38646 42411 0.262835 - . ID=CGI_10012620; scaffold279 GLEAN promoter 42412 43411 0.262835 - . ID=CGI_10012620; scaffold279 TRF Tandem_Repeat 49491 49529 69 + . . scaffold279 TRF Tandem_Repeat 55976 56017 84 + . . scaffold279 GLEAN mRNA 64013 83426 1 - . ID=CGI_10012621; scaffold279 TRF Tandem_Repeat 72110 72155 65 + . . scaffold279 TRF Tandem_Repeat 72111 72155 60 + . . scaffold279 TRF Tandem_Repeat 73878 73915 76 + . . scaffold279 TRF Tandem_Repeat 82495 82544 100 + . . scaffold279 GLEAN promoter 83427 84426 1 - . ID=CGI_10012621; scaffold279 GLEAN mRNA 99091 106870 0.889385 - . ID=CGI_10012622; scaffold279 GLEAN promoter 106871 107870 0.889385 - . ID=CGI_10012622; scaffold279 GLEAN promoter 108023 109022 0.999351 + . ID=CGI_10012623; scaffold279 GLEAN mRNA 109023 121796 0.999351 + . ID=CGI_10012623; scaffold279 TRF Tandem_Repeat 109411 109504 127 + . . scaffold279 TRF Tandem_Repeat 109695 109814 134 + . . scaffold279 TRF Tandem_Repeat 109941 110029 72 + . . scaffold279 GLEAN mRNA 112169 129832 0.999665 - . ID=CGI_10012624; scaffold279 GLEAN promoter 129148 130147 0.999415 + . ID=CGI_10012625; scaffold279 GLEAN promoter 129833 130832 0.999665 - . ID=CGI_10012624; scaffold279 GLEAN mRNA 130148 139080 0.999415 + . ID=CGI_10012625; scaffold279 GLEAN mRNA 138854 150696 0.976215 - . ID=CGI_10012626; scaffold279 GLEAN promoter 150697 151696 0.976215 - . ID=CGI_10012626; scaffold279 GLEAN mRNA 154783 159705 1 - . ID=CGI_10012627; scaffold279 TRF Tandem_Repeat 155084 155112 58 + . . scaffold279 TRF Tandem_Repeat 158752 158807 112 + . . scaffold279 TRF Tandem_Repeat 159318 159379 106 + . . scaffold279 GLEAN promoter 159706 160705 1 - . ID=CGI_10012627; scaffold279 TRF Tandem_Repeat 161194 161250 114 + . . scaffold279 TRF Tandem_Repeat 162445 162470 52 + . . scaffold279 GLEAN promoter 170204 171203 0.999661 + . ID=CGI_10012628; scaffold279 GLEAN mRNA 171204 172997 0.999661 + . ID=CGI_10012628; scaffold279 WUBlastX LTR_DIRS 179795 179968 43 + . . scaffold279 WUBlastX LTR_DIRS 179837 179968 82 + . . scaffold279 GLEAN mRNA 201569 212148 0.999676 - . ID=CGI_10012629; scaffold279 TRF Tandem_Repeat 210835 210880 67 + . . scaffold279 GLEAN promoter 212149 213148 0.999676 - . ID=CGI_10012629; scaffold279 GLEAN promoter 223675 224674 0.873283 + . ID=CGI_10012630; scaffold279 GLEAN mRNA 224675 251136 0.873283 + . ID=CGI_10012630; scaffold279 TRF Tandem_Repeat 229266 229300 70 + . . scaffold279 TRF Tandem_Repeat 236254 236493 338 + . . scaffold279 TRF Tandem_Repeat 238835 239560 517 + . . scaffold279 TRF Tandem_Repeat 238840 239560 586 + . . scaffold279 TRF Tandem_Repeat 238902 239560 605 + . . scaffold279 TRF Tandem_Repeat 242504 242965 504 + . . scaffold279 TRF Tandem_Repeat 242644 242963 529 + . . scaffold279 TRF Tandem_Repeat 246040 246092 88 + . . scaffold279 TRF Tandem_Repeat 252425 252709 480 + . . scaffold279 GLEAN promoter 266939 267938 0.999674 + . ID=CGI_10012631; scaffold279 GLEAN mRNA 267939 272289 0.999674 + . ID=CGI_10012631; scaffold279 GLEAN promoter 279191 280190 0.560066 + . ID=CGI_10012632; scaffold279 GLEAN mRNA 280191 283832 0.560066 + . ID=CGI_10012632; scaffold279 GLEAN promoter 287868 288867 0.998029 + . ID=CGI_10012633; scaffold279 GLEAN mRNA 288868 299754 0.998029 + . ID=CGI_10012633; scaffold279 TRF Tandem_Repeat 299170 299229 66 + . . scaffold279 TRF Tandem_Repeat 299178 299233 71 + . . scaffold279 GLEAN promoter 301214 302213 1 + . ID=CGI_10012634; scaffold279 TRF Tandem_Repeat 301638 301695 116 + . . scaffold279 GLEAN mRNA 302214 303749 1 + . ID=CGI_10012634; scaffold279 GLEAN mRNA 305422 311049 0.651135 - . ID=CGI_10012635; scaffold279 GLEAN promoter 311050 312049 0.651135 - . ID=CGI_10012635; scaffold279 TRF Tandem_Repeat 312205 312259 101 + . . scaffold279 GLEAN mRNA 312977 313534 0.507787 - . ID=CGI_10012636; scaffold279 GLEAN promoter 313535 314534 0.507787 - . ID=CGI_10012636; scaffold279 TRF Tandem_Repeat 316285 316324 80 + . . scaffold279 GLEAN mRNA 317072 331323 0.859933 - . ID=CGI_10012637; scaffold279 TRF Tandem_Repeat 322022 322104 148 + . . scaffold279 TRF Tandem_Repeat 323149 323222 148 + . . scaffold279 GLEAN promoter 331324 332119 0.859933 - . ID=CGI_10012637; scaffold27958 WUBlastX LINE_L1 2297 2554 22 + . . scaffold27958 WUBlastX LINE_L1-Tx1 2342 2515 71 + . . scaffold27958 WUBlastX LINE_L1 2348 2560 32 + . . scaffold27958 WUBlastX LINE_L1-Tx1 2550 5012 1408 + . . scaffold280 GLEAN promoter 1 380 1 + . ID=CGI_10024561; scaffold280 GLEAN mRNA 75 1179 1 - . ID=CGI_10024560; scaffold280 GLEAN mRNA 381 740 1 + . ID=CGI_10024561; scaffold280 GLEAN promoter 1180 2179 1 - . ID=CGI_10024560; scaffold280 GLEAN mRNA 6042 9373 1 - . ID=CGI_10024562; scaffold280 TRF Tandem_Repeat 8390 8441 104 + . . scaffold280 GLEAN promoter 8645 9644 1 + . ID=CGI_10024563; scaffold280 GLEAN promoter 9374 10373 1 - . ID=CGI_10024562; scaffold280 GLEAN mRNA 9645 17196 1 + . ID=CGI_10024563; scaffold280 GLEAN mRNA 18207 49782 0.522936 - . ID=CGI_10024564; scaffold280 TRF Tandem_Repeat 25025 25086 124 + . . scaffold280 TRF Tandem_Repeat 27659 27716 70 + . . scaffold280 TRF Tandem_Repeat 28272 28449 94 + . . scaffold280 TRF Tandem_Repeat 29357 29466 98 + . . scaffold280 TRF Tandem_Repeat 32666 32692 54 + . . scaffold280 TRF Tandem_Repeat 36228 36301 121 + . . scaffold280 GLEAN promoter 49783 50782 0.522936 - . ID=CGI_10024564; scaffold280 GLEAN mRNA 49887 54471 0.999934 - . ID=CGI_10024565; scaffold280 GLEAN promoter 54472 55471 0.999934 - . ID=CGI_10024565; scaffold280 GLEAN mRNA 54560 78734 0.381674 - . ID=CGI_10024566; scaffold280 TRF Tandem_Repeat 66509 68119 2192 + . . scaffold280 TRF Tandem_Repeat 66548 68119 2206 + . . scaffold280 TRF Tandem_Repeat 68155 68190 56 + . . scaffold280 GLEAN promoter 72185 73184 0.999999 + . ID=CGI_10024567; scaffold280 GLEAN mRNA 73185 78744 0.999999 + . ID=CGI_10024567; scaffold280 GLEAN promoter 78735 79734 0.381674 - . ID=CGI_10024566; scaffold280 GLEAN mRNA 98649 99793 0.734569 - . ID=CGI_10024568; scaffold280 GLEAN promoter 99222 100221 1 + . ID=CGI_10024569; scaffold280 TRF Tandem_Repeat 99579 99607 51 + . . scaffold280 GLEAN promoter 99794 100793 0.734569 - . ID=CGI_10024568; scaffold280 GLEAN mRNA 100222 109705 1 + . ID=CGI_10024569; scaffold280 GLEAN mRNA 109565 121748 0.474512 - . ID=CGI_10024570; scaffold280 GLEAN promoter 121749 122748 0.474512 - . ID=CGI_10024570; scaffold280 TRF Tandem_Repeat 128564 128677 167 + . . scaffold280 TRF Tandem_Repeat 128838 128943 90 + . . scaffold280 GLEAN mRNA 140350 154685 0.999999 - . ID=CGI_10024571; scaffold280 GLEAN promoter 154686 155685 0.999999 - . ID=CGI_10024571; scaffold280 GLEAN mRNA 155459 157119 1 - . ID=CGI_10024572; scaffold280 GLEAN promoter 157120 158119 1 - . ID=CGI_10024572; scaffold280 GLEAN promoter 157540 158539 0.651129 + . ID=CGI_10024573; scaffold280 TRF Tandem_Repeat 157779 157822 88 + . . scaffold280 GLEAN mRNA 158540 172639 0.651129 + . ID=CGI_10024573; scaffold280 TRF Tandem_Repeat 169995 170195 185 + . . scaffold280 WUBlastX LINE_L2 175193 175270 27 + . . scaffold280 WUBlastX LINE_CR1 175837 176223 30 + . . scaffold280 WUBlastX LINE_RTE-X 175903 176973 378 + . . scaffold280 GLEAN promoter 188437 189436 1 + . ID=CGI_10024574; scaffold280 GLEAN mRNA 189437 191280 1 + . ID=CGI_10024574; scaffold280 TRF Tandem_Repeat 194931 194981 102 + . . scaffold280 GLEAN promoter 200150 201149 0.999999 + . ID=CGI_10024575; scaffold280 GLEAN mRNA 201150 201797 0.999999 + . ID=CGI_10024575; scaffold280 TRF Tandem_Repeat 201852 201902 59 + . . scaffold280 TRF Tandem_Repeat 209802 209839 76 + . . scaffold280 TRF Tandem_Repeat 213489 214031 425 + . . scaffold280 GLEAN promoter 215509 216508 0.999661 + . ID=CGI_10024576; scaffold280 GLEAN mRNA 216509 217153 0.999661 + . ID=CGI_10024576; scaffold280 TRF Tandem_Repeat 218400 218442 77 + . . scaffold280 GLEAN promoter 219662 220661 0.828496 + . ID=CGI_10024577; scaffold280 GLEAN mRNA 220662 221309 0.828496 + . ID=CGI_10024577; scaffold280 TRF Tandem_Repeat 226411 226464 108 + . . scaffold280 TRF Tandem_Repeat 228130 228188 58 + . . scaffold280 TRF Tandem_Repeat 228130 228188 61 + . . scaffold280 TRF Tandem_Repeat 228440 228478 78 + . . scaffold280 TRF Tandem_Repeat 229046 230050 1239 + . . scaffold280 TRF Tandem_Repeat 231339 231396 116 + . . scaffold280 GLEAN promoter 232194 233193 0.999661 + . ID=CGI_10024578; scaffold280 GLEAN mRNA 233194 233541 0.999661 + . ID=CGI_10024578; scaffold280 GLEAN promoter 235355 236354 1 + . ID=CGI_10024579; scaffold280 TRF Tandem_Repeat 236009 236067 118 + . . scaffold280 GLEAN mRNA 236355 237793 1 + . ID=CGI_10024579; scaffold280 GLEAN promoter 240369 241368 1 + . ID=CGI_10024580; scaffold280 GLEAN mRNA 241369 245008 1 + . ID=CGI_10024580; scaffold280 TRF Tandem_Repeat 244769 244812 79 + . . scaffold280 GLEAN promoter 245053 246052 0.999851 + . ID=CGI_10024581; scaffold280 GLEAN mRNA 246053 262125 0.999851 + . ID=CGI_10024581; scaffold280 TRF Tandem_Repeat 251803 251855 90 + . . scaffold280 GLEAN mRNA 263440 263769 1 - . ID=CGI_10024582; scaffold280 GLEAN promoter 263770 264769 1 - . ID=CGI_10024582; scaffold280 TRF Tandem_Repeat 265591 265642 104 + . . scaffold280 GLEAN promoter 276861 277860 0.573181 + . ID=CGI_10024583; scaffold280 GLEAN mRNA 277861 292951 0.573181 + . ID=CGI_10024583; scaffold280 TRF Tandem_Repeat 281538 281576 78 + . . scaffold280 TRF Tandem_Repeat 285733 285771 78 + . . scaffold280 TRF Tandem_Repeat 291919 292087 144 + . . scaffold280 GLEAN mRNA 294180 299342 1 - . ID=CGI_10024584; scaffold280 GLEAN promoter 299343 300342 1 - . ID=CGI_10024584; scaffold280 GLEAN mRNA 304567 309658 0.654708 - . ID=CGI_10024585; scaffold280 GLEAN promoter 308890 309889 0.991247 + . ID=CGI_10024586; scaffold280 GLEAN promoter 309659 310658 0.654708 - . ID=CGI_10024585; scaffold280 GLEAN mRNA 309890 312993 0.991247 + . ID=CGI_10024586; scaffold280 GLEAN mRNA 315819 320386 0.994697 - . ID=CGI_10024587; scaffold280 GLEAN promoter 320387 321386 0.994697 - . ID=CGI_10024587; scaffold280 TRF Tandem_Repeat 320679 320717 78 + . . scaffold280 TRF Tandem_Repeat 323121 323171 95 + . . scaffold280 TRF Tandem_Repeat 323951 324008 64 + . . scaffold280 TRF Tandem_Repeat 323961 324008 57 + . . scaffold280 TRF Tandem_Repeat 352824 352859 72 + . . scaffold280 WUBlastX DNA_PiggyBac 361391 361882 30 + . . scaffold280 WUBlastX DNA_PiggyBac 361472 361888 46 + . . scaffold280 WUBlastX DNA_PiggyBac 361517 361858 111 + . . scaffold280 WUBlastX LINE_CR1-L2 364532 364639 20 - . . scaffold280 WUBlastX LINE_CR1-L2 365827 366063 34 - . . scaffold280 GLEAN mRNA 369882 371292 0.999676 - . ID=CGI_10024588; scaffold280 GLEAN promoter 371293 372292 0.999676 - . ID=CGI_10024588; scaffold280 TRF Tandem_Repeat 374243 374291 82 + . . scaffold280 WUBlastX LINE_RTE-X 376739 377071 153 + . . scaffold280 WUBlastX LINE_RTE-X 377262 377336 26 + . . scaffold280 WUBlastX LINE_RTE-X 377343 377432 31 + . . scaffold280 WUBlastX LINE_RTE-X 383773 384225 55 + . . scaffold280 WUBlastX LINE_RTE-X 383788 384102 78 + . . scaffold280 WUBlastX LINE_RTE-X 384282 384620 85 + . . scaffold280 TRF Tandem_Repeat 385887 385968 74 + . . scaffold280 TRF Tandem_Repeat 385906 385948 86 + . . scaffold280 TRF Tandem_Repeat 385910 385968 64 + . . scaffold280 TRF Tandem_Repeat 386320 386465 152 + . . scaffold280 TRF Tandem_Repeat 386331 386377 94 + . . scaffold280 TRF Tandem_Repeat 386375 386465 150 + . . scaffold280 TRF Tandem_Repeat 386760 386808 91 + . . scaffold280 TRF Tandem_Repeat 388423 388463 82 + . . scaffold280 TRF Tandem_Repeat 390203 390238 72 + . . scaffold280 TRF Tandem_Repeat 392521 392569 89 + . . scaffold280 TRF Tandem_Repeat 393153 393245 98 + . . scaffold280 TRF Tandem_Repeat 396882 397631 1190 + . . scaffold280 WUBlastX LINE_RTE-X 406279 406971 105 + . . scaffold280 WUBlastX LINE_RTE-X 407024 408130 468 + . . scaffold280 WUBlastX LINE_RTE-X 408115 409191 349 + . . scaffold280 WUBlastX LINE_RTE-X 408562 409332 165 + . . scaffold280 TRF Tandem_Repeat 410965 411061 72 + . . scaffold280 GLEAN mRNA 411081 421047 0.882829 - . ID=CGI_10024589; scaffold280 TRF Tandem_Repeat 417094 417139 92 + . . scaffold280 GLEAN promoter 421048 422047 0.882829 - . ID=CGI_10024589; scaffold280 TRF Tandem_Repeat 424419 424958 498 + . . scaffold280 TRF Tandem_Repeat 424542 424958 559 + . . scaffold280 GLEAN mRNA 425390 442325 0.544833 - . ID=CGI_10024590; scaffold280 TRF Tandem_Repeat 427512 427567 112 + . . scaffold280 GLEAN promoter 442326 443325 0.544833 - . ID=CGI_10024590; scaffold280 TRF Tandem_Repeat 449184 449212 58 + . . scaffold280 GLEAN mRNA 472068 479948 0.999996 - . ID=CGI_10024591; scaffold280 TRF Tandem_Repeat 472282 472415 196 + . . scaffold280 TRF Tandem_Repeat 476484 476528 90 + . . scaffold280 TRF Tandem_Repeat 477066 477113 96 + . . scaffold280 GLEAN promoter 479949 480948 0.999996 - . ID=CGI_10024591; scaffold280 TRF Tandem_Repeat 481000 481039 73 + . . scaffold280 TRF Tandem_Repeat 493563 493642 160 + . . scaffold280 TRF Tandem_Repeat 520759 520824 79 + . . scaffold280 TRF Tandem_Repeat 520766 520818 70 + . . scaffold280 TRF Tandem_Repeat 522425 522476 68 + . . scaffold280 TRF Tandem_Repeat 523550 523597 53 + . . scaffold280 TRF Tandem_Repeat 527607 527632 52 + . . scaffold280 WUBlastX LINE_L2 527871 529061 783 - . . scaffold280 TRF Tandem_Repeat 529095 529228 101 + . . scaffold280 WUBlastX LINE_CR1 529334 529384 21 - . . scaffold280 TRF Tandem_Repeat 530218 530328 115 + . . scaffold280 WUBlastX LINE_L2 530364 530933 156 - . . scaffold280 WUBlastX LINE_L2 530603 531736 360 - . . scaffold280 GLEAN mRNA 534046 539069 0.996859 - . ID=CGI_10024592; scaffold280 GLEAN promoter 539070 540069 0.996859 - . ID=CGI_10024592; scaffold280 WUBlastX LTR_Copia 539656 539685 20 + . . scaffold280 GLEAN mRNA 539866 548107 0.999674 - . ID=CGI_10024593; scaffold280 GLEAN promoter 548108 549107 0.999674 - . ID=CGI_10024593; scaffold280 TRF Tandem_Repeat 551183 551233 102 + . . scaffold280 TRF Tandem_Repeat 552426 552472 69 + . . scaffold280 TRF Tandem_Repeat 553586 553632 94 + . . scaffold280 TRF Tandem_Repeat 555030 555074 90 + . . scaffold280 TRF Tandem_Repeat 562872 562900 58 + . . scaffold280 GLEAN mRNA 564810 574404 0.999996 - . ID=CGI_10024594; scaffold280 TRF Tandem_Repeat 568788 568950 147 + . . scaffold280 TRF Tandem_Repeat 569947 570192 420 + . . scaffold280 GLEAN promoter 574405 575404 0.999996 - . ID=CGI_10024594; scaffold280 GLEAN mRNA 576679 577599 0.911689 - . ID=CGI_10024595; scaffold280 GLEAN promoter 577600 578599 0.911689 - . ID=CGI_10024595; scaffold280 GLEAN mRNA 579437 592170 0.977964 - . ID=CGI_10024596; scaffold280 WUBlastX LINE_L2 581977 584439 1203 - . . scaffold280 WUBlastX LINE_CR1 588779 588994 20 - . . scaffold280 WUBlastX LINE_L2 588936 589466 229 - . . scaffold280 WUBlastX LINE_CR1-L2 589113 589568 204 - . . scaffold280 WUBlastX LINE_L1 590115 590663 59 - . . scaffold280 WUBlastX LINE_L1 590196 590813 51 - . . scaffold280 WUBlastX LINE_CR1-L2 590208 590663 247 - . . scaffold280 GLEAN promoter 592171 593170 0.977964 - . ID=CGI_10024596; scaffold280 GLEAN promoter 592188 593187 1 + . ID=CGI_10024597; scaffold280 GLEAN mRNA 593188 593646 1 + . ID=CGI_10024597; scaffold280 TRF Tandem_Repeat 594145 594195 102 + . . scaffold280 GLEAN mRNA 595756 613298 0.816312 - . ID=CGI_10024598; scaffold280 TRF Tandem_Repeat 602022 602049 56 + . . scaffold280 TRF Tandem_Repeat 605141 605218 156 + . . scaffold280 TRF Tandem_Repeat 605235 605264 60 + . . scaffold280 GLEAN promoter 613299 614298 0.816312 - . ID=CGI_10024598; scaffold280 GLEAN promoter 614100 615099 1 + . ID=CGI_10024600; scaffold280 GLEAN mRNA 614979 615134 1 - . ID=CGI_10024599; scaffold280 TRF Tandem_Repeat 615017 615606 824 + . . scaffold280 GLEAN mRNA 615100 615456 1 + . ID=CGI_10024600; scaffold280 GLEAN promoter 615135 616134 1 - . ID=CGI_10024599; scaffold280 TRF Tandem_Repeat 627680 627724 90 + . . scaffold280 WUBlastX LINE_CR1 631631 631936 90 + . . scaffold280 WUBlastX LINE_L2 631712 632044 40 + . . scaffold280 WUBlastX RC_Helitron 633182 633748 133 + . . scaffold280 WUBlastX RC_Helitron 633311 633853 246 + . . scaffold280 WUBlastX RC_Helitron 633895 634203 54 + . . scaffold280 TRF Tandem_Repeat 635125 635193 75 + . . scaffold280 WUBlastX DNA_TcMar-Tc1 639383 639673 72 - . . scaffold280 GLEAN mRNA 645758 661781 0.996424 - . ID=CGI_10024601; scaffold280 WUBlastX LTR_DIRS 649597 649971 96 + . . scaffold280 WUBlastX LTR_DIRS 649684 650010 138 + . . scaffold280 GLEAN promoter 661782 662781 0.996424 - . ID=CGI_10024601; scaffold280 TRF Tandem_Repeat 662857 663102 377 + . . scaffold280 WUBlastX LINE_RTE-X 669886 670230 94 - . . scaffold280 WUBlastX LINE_RTE-X 669898 670344 31 - . . scaffold280 WUBlastX LINE_Penelope 673400 673558 40 + . . scaffold280 WUBlastX LINE_Penelope 673400 673591 32 + . . scaffold280 WUBlastX LINE_Penelope 673842 674129 106 + . . scaffold280 WUBlastX LINE_Penelope 673842 674183 98 + . . scaffold280 TRF Tandem_Repeat 675822 675965 198 + . . scaffold280 TRF Tandem_Repeat 677824 677858 61 + . . scaffold280 TRF Tandem_Repeat 682997 683037 82 + . . scaffold280 GLEAN mRNA 692326 718784 0.731079 - . ID=CGI_10024602; scaffold280 WUBlastX LTR_ERV1 695453 695968 37 - . . scaffold280 TRF Tandem_Repeat 696902 696931 60 + . . scaffold280 TRF Tandem_Repeat 700371 700423 106 + . . scaffold280 TRF Tandem_Repeat 700468 700506 78 + . . scaffold280 GLEAN promoter 707966 708965 1 + . ID=CGI_10024603; scaffold280 GLEAN mRNA 708966 713313 1 + . ID=CGI_10024603; scaffold280 TRF Tandem_Repeat 716058 716140 130 + . . scaffold280 TRF Tandem_Repeat 716851 716886 63 + . . scaffold280 TRF Tandem_Repeat 716851 716890 53 + . . scaffold280 TRF Tandem_Repeat 718605 718682 149 + . . scaffold280 GLEAN promoter 718785 719784 0.731079 - . ID=CGI_10024602; scaffold280 GLEAN mRNA 720202 723788 0.999161 - . ID=CGI_10024604; scaffold280 TRF Tandem_Repeat 721097 721136 80 + . . scaffold280 TRF Tandem_Repeat 721464 721508 81 + . . scaffold280 GLEAN promoter 723789 724788 0.999161 - . ID=CGI_10024604; scaffold280 TRF Tandem_Repeat 723847 723946 107 + . . scaffold280 TRF Tandem_Repeat 724956 725045 144 + . . scaffold280 TRF Tandem_Repeat 725563 725607 90 + . . scaffold280 TRF Tandem_Repeat 727623 727650 56 + . . scaffold280 TRF Tandem_Repeat 729098 729149 86 + . . scaffold280 TRF Tandem_Repeat 729867 729894 56 + . . scaffold280 GLEAN mRNA 732005 733810 0.83625 - . ID=CGI_10024605; scaffold280 GLEAN promoter 733811 734810 0.83625 - . ID=CGI_10024605; scaffold280 GLEAN promoter 738940 739939 1 + . ID=CGI_10024606; scaffold280 GLEAN mRNA 739940 740972 1 + . ID=CGI_10024606; scaffold280 GLEAN promoter 742246 743245 0.948252 + . ID=CGI_10024607; scaffold280 GLEAN mRNA 743246 752809 0.948252 + . ID=CGI_10024607; scaffold280 TRF Tandem_Repeat 748327 748667 538 + . . scaffold280 GLEAN promoter 754841 755840 0.948252 + . ID=CGI_10024608; scaffold280 GLEAN mRNA 755841 761046 0.948252 + . ID=CGI_10024608; scaffold280 GLEAN mRNA 762086 785221 0.80135 - . ID=CGI_10024609; scaffold280 TRF Tandem_Repeat 765733 765806 130 + . . scaffold280 GLEAN promoter 785222 786221 0.80135 - . ID=CGI_10024609; scaffold280 TRF Tandem_Repeat 789908 789964 107 + . . scaffold280 TRF Tandem_Repeat 794750 794790 55 + . . scaffold280 TRF Tandem_Repeat 795012 795043 64 + . . scaffold280 TRF Tandem_Repeat 808842 808880 69 + . . scaffold280 TRF Tandem_Repeat 820995 822121 1648 + . . scaffold280 TRF Tandem_Repeat 822145 822210 105 + . . scaffold280 TRF Tandem_Repeat 822148 822210 99 + . . scaffold280 TRF Tandem_Repeat 822152 822211 75 + . . scaffold280 TRF Tandem_Repeat 861774 861825 86 + . . scaffold280 GLEAN mRNA 872070 872282 0.999371 - . ID=CGI_10024610; scaffold280 GLEAN promoter 872283 873282 0.999371 - . ID=CGI_10024610; scaffold280 WUBlastX DNA_Sola 885169 885399 43 + . . scaffold280 WUBlastX DNA_Sola 885172 885453 23 + . . scaffold280 WUBlastX DNA_Sola 885172 885354 48 + . . scaffold280 WUBlastX DNA_Sola 885617 885805 47 + . . scaffold280 WUBlastX DNA_hAT 886563 886658 24 + . . scaffold280 WUBlastX DNA_hAT-Ac 887346 887729 83 + . . scaffold280 WUBlastX DNA_hAT-Ac 887463 887735 132 + . . scaffold280 WUBlastX DNA_hAT-Ac 887945 888004 24 + . . scaffold280 WUBlastX DNA_hAT-Ac 890739 890921 72 + . . scaffold280 WUBlastX DNA_Sola 894956 895549 35 + . . scaffold280 WUBlastX DNA_Sola 895988 896767 107 + . . scaffold280 WUBlastX LTR_Pao 909756 910226 92 + . . scaffold280 WUBlastX LTR_Pao 910785 911057 33 + . . scaffold280 WUBlastX LTR_Pao 910845 911096 92 + . . scaffold280 WUBlastX LTR_Pao 910902 911099 135 + . . scaffold280 WUBlastX LTR_Pao 910908 911150 71 + . . scaffold280 WUBlastX LINE_L1 913964 914212 68 - . . scaffold280 WUBlastX LINE_L1-Tx1 913964 914173 81 - . . scaffold280 WUBlastX LTR_Gypsy 917996 918109 23 + . . scaffold280 WUBlastX LTR_Gypsy 918083 918184 21 + . . scaffold280 WUBlastX LTR_Gypsy-Cigr 918330 918599 41 + . . scaffold280 WUBlastX LTR_Gypsy 918459 918599 46 + . . scaffold280 WUBlastX LTR_Gypsy 918521 918880 139 + . . scaffold280 WUBlastX LTR_Gypsy 918587 919105 91 + . . scaffold280 WUBlastX LTR_Gypsy 918587 918895 246 + . . scaffold280 WUBlastX LTR_Gypsy 919141 919260 20 + . . scaffold280 WUBlastX LTR_Gypsy 919308 919481 24 + . . scaffold280 WUBlastX LTR_Gypsy 919320 919373 28 + . . scaffold280 GLEAN mRNA 923641 923886 0.547036 - . ID=CGI_10024611; scaffold280 GLEAN promoter 923887 924886 0.547036 - . ID=CGI_10024611; scaffold280 GLEAN mRNA 934051 943219 0.999996 - . ID=CGI_10024612; scaffold280 TRF Tandem_Repeat 934376 934411 72 + . . scaffold280 GLEAN promoter 943220 944219 0.999996 - . ID=CGI_10024612; scaffold280 TRF Tandem_Repeat 945095 945168 148 + . . scaffold280 GLEAN mRNA 946590 948503 1 - . ID=CGI_10024613; scaffold280 GLEAN promoter 948504 949503 1 - . ID=CGI_10024613; scaffold280 TRF Tandem_Repeat 950443 950474 64 + . . scaffold281 GLEAN mRNA 9731 10276 0.999661 - . ID=CGI_10006631; scaffold281 GLEAN promoter 10277 11276 0.999661 - . ID=CGI_10006631; scaffold281 GLEAN promoter 81767 82766 1 + . ID=CGI_10006632; scaffold281 GLEAN mRNA 82767 84005 1 + . ID=CGI_10006632; scaffold281 GLEAN mRNA 109082 113881 0.999824 - . ID=CGI_10006633; scaffold281 GLEAN promoter 113882 114881 0.999824 - . ID=CGI_10006633; scaffold281 GLEAN promoter 115134 116133 0.839946 + . ID=CGI_10006634; scaffold281 GLEAN mRNA 116134 127065 0.839946 + . ID=CGI_10006634; scaffold281 GLEAN promoter 129314 130313 0.813919 + . ID=CGI_10006635; scaffold281 GLEAN mRNA 130314 153034 0.813919 + . ID=CGI_10006635; scaffold281 GLEAN mRNA 156325 156797 1 - . ID=CGI_10006636; scaffold281 GLEAN promoter 156798 157647 1 - . ID=CGI_10006636; scaffold28138 TRF Tandem_Repeat 1039 1075 74 + . . scaffold28138 TRF Tandem_Repeat 3878 3903 52 + . . scaffold28138 WUBlastX LINE_RTE-X 4034 4573 122 - . . scaffold282 GLEAN promoter 1 323 1 + . ID=CGI_10000334; scaffold282 GLEAN mRNA 324 3949 1 + . ID=CGI_10000334; scaffold283 GLEAN promoter 1 344 1 + . ID=CGI_10000862; scaffold283 GLEAN mRNA 345 8847 1 + . ID=CGI_10000862; scaffold28314 GLEAN mRNA 1195 5341 1 - . ID=CGI_10000417; scaffold28314 GLEAN promoter 5342 5434 1 - . ID=CGI_10000417; scaffold28372 TRF Tandem_Repeat 2781 2855 87 + . . scaffold28372 WUBlastX LINE_RTE-X 3570 3875 103 + . . scaffold28372 WUBlastX LINE_RTE-X 3627 3887 164 + . . scaffold28372 WUBlastX LINE_RTE-X 3866 4345 125 + . . scaffold28372 WUBlastX LINE_RTE-X 3896 4525 75 + . . scaffold28372 WUBlastX LINE_RTE-X 3953 4426 113 + . . scaffold284 GLEAN mRNA 21024 22573 1 - . ID=CGI_10002394; scaffold284 GLEAN promoter 22574 23573 1 - . ID=CGI_10002394; scaffold284 GLEAN mRNA 24508 37368 0.980064 - . ID=CGI_10002395; scaffold284 GLEAN promoter 37369 38368 0.980064 - . ID=CGI_10002395; scaffold284 GLEAN mRNA 40671 41323 0.999999 - . ID=CGI_10002396; scaffold284 GLEAN promoter 41324 42323 0.999999 - . ID=CGI_10002396; scaffold28424 WUBlastX DNA_Crypton 3920 4111 62 - . . scaffold285 GLEAN mRNA 12127 25700 0.988929 - . ID=CGI_10011150; scaffold285 TRF Tandem_Repeat 22840 22888 98 + . . scaffold285 GLEAN promoter 25203 26202 0.836758 + . ID=CGI_10011151; scaffold285 GLEAN promoter 25701 26700 0.988929 - . ID=CGI_10011150; scaffold285 GLEAN mRNA 26203 31907 0.836758 + . ID=CGI_10011151; scaffold285 GLEAN mRNA 36069 53505 0.499995 - . ID=CGI_10011152; scaffold285 TRF Tandem_Repeat 36944 36984 82 + . . scaffold285 TRF Tandem_Repeat 38194 38233 80 + . . scaffold285 GLEAN promoter 53506 54505 0.499995 - . ID=CGI_10011152; scaffold285 GLEAN promoter 56631 57630 0.729885 + . ID=CGI_10011153; scaffold285 GLEAN mRNA 57631 67585 0.729885 + . ID=CGI_10011153; scaffold285 TRF Tandem_Repeat 59627 60531 1213 + . . scaffold285 TRF Tandem_Repeat 61702 61888 61 + . . scaffold285 TRF Tandem_Repeat 61742 61941 62 + . . scaffold285 GLEAN promoter 68245 69244 0.646824 + . ID=CGI_10011154; scaffold285 GLEAN mRNA 69245 73904 0.646824 + . ID=CGI_10011154; scaffold285 GLEAN mRNA 75363 81642 0.893571 - . ID=CGI_10011155; scaffold285 GLEAN promoter 81643 82642 0.893571 - . ID=CGI_10011155; scaffold285 TRF Tandem_Repeat 83556 83604 98 + . . scaffold285 TRF Tandem_Repeat 84580 84637 55 + . . scaffold285 GLEAN promoter 86572 87571 1 + . ID=CGI_10011156; scaffold285 GLEAN mRNA 87572 89017 1 + . ID=CGI_10011156; scaffold285 GLEAN mRNA 92022 93243 0.999928 - . ID=CGI_10011157; scaffold285 GLEAN promoter 93244 94243 0.999928 - . ID=CGI_10011157; scaffold285 TRF Tandem_Repeat 95044 95223 101 + . . scaffold285 GLEAN mRNA 102267 111197 1 - . ID=CGI_10011158; scaffold285 GLEAN promoter 111198 112197 1 - . ID=CGI_10011158; scaffold285 TRF Tandem_Repeat 112015 112074 120 + . . scaffold285 TRF Tandem_Repeat 112469 112583 60 + . . scaffold285 GLEAN promoter 113578 114577 0.998804 + . ID=CGI_10011159; scaffold285 GLEAN mRNA 114578 127822 0.998804 + . ID=CGI_10011159; scaffold285 TRF Tandem_Repeat 118780 118828 98 + . . scaffold285 GLEAN mRNA 130361 138583 1 - . ID=CGI_10011160; scaffold285 TRF Tandem_Repeat 132475 132615 257 + . . scaffold285 GLEAN promoter 138584 139583 1 - . ID=CGI_10011160; scaffold285 GLEAN promoter 141902 142901 0.713707 + . ID=CGI_10011161; scaffold285 TRF Tandem_Repeat 142100 142169 61 + . . scaffold285 GLEAN mRNA 142902 150104 0.713707 + . ID=CGI_10011161; scaffold285 GLEAN mRNA 159796 184177 0.859929 - . ID=CGI_10011162; scaffold285 TRF Tandem_Repeat 160332 160854 379 + . . scaffold285 TRF Tandem_Repeat 160400 160925 621 + . . scaffold285 TRF Tandem_Repeat 160643 160806 161 + . . scaffold285 TRF Tandem_Repeat 160676 161041 447 + . . scaffold285 TRF Tandem_Repeat 160790 161085 175 + . . scaffold285 TRF Tandem_Repeat 160790 161085 281 + . . scaffold285 TRF Tandem_Repeat 165136 165185 100 + . . scaffold285 GLEAN promoter 184178 185177 0.859929 - . ID=CGI_10011162; scaffold285 GLEAN mRNA 184265 192768 1 - . ID=CGI_10011163; scaffold285 GLEAN promoter 192769 193768 1 - . ID=CGI_10011163; scaffold285 GLEAN mRNA 196910 199958 0.999481 - . ID=CGI_10011164; scaffold285 GLEAN promoter 199959 200958 0.999481 - . ID=CGI_10011164; scaffold285 GLEAN mRNA 202375 205704 0.804456 - . ID=CGI_10011165; scaffold285 GLEAN promoter 205705 206704 0.804456 - . ID=CGI_10011165; scaffold285 TRF Tandem_Repeat 211294 211343 55 + . . scaffold285 TRF Tandem_Repeat 215962 216000 78 + . . scaffold285 TRF Tandem_Repeat 224793 224848 62 + . . scaffold285 TRF Tandem_Repeat 224793 224838 83 + . . scaffold285 GLEAN mRNA 230526 231356 0.721985 - . ID=CGI_10011166; scaffold285 GLEAN promoter 231357 232356 0.721985 - . ID=CGI_10011166; scaffold285 WUBlastX LTR_DIRS 231521 232015 49 + . . scaffold285 WUBlastX LTR_DIRS 231734 232024 56 + . . scaffold285 WUBlastX LTR_DIRS 233090 233689 147 + . . scaffold285 WUBlastX LTR_DIRS 233685 233963 169 + . . scaffold285 GLEAN mRNA 239998 243776 0.983987 - . ID=CGI_10011167; scaffold285 GLEAN promoter 243777 244776 0.983987 - . ID=CGI_10011167; scaffold285 TRF Tandem_Repeat 247221 247261 50 + . . scaffold285 GLEAN mRNA 251548 254312 0.895973 - . ID=CGI_10011168; scaffold285 GLEAN promoter 254313 255312 0.895973 - . ID=CGI_10011168; scaffold285 TRF Tandem_Repeat 255122 255208 86 + . . scaffold285 TRF Tandem_Repeat 255286 255467 136 + . . scaffold285 TRF Tandem_Repeat 255393 255480 106 + . . scaffold285 TRF Tandem_Repeat 255477 255586 96 + . . scaffold285 TRF Tandem_Repeat 255496 255597 114 + . . scaffold285 TRF Tandem_Repeat 258818 258884 80 + . . scaffold285 TRF Tandem_Repeat 261471 261505 61 + . . scaffold285 TRF Tandem_Repeat 261503 261542 80 + . . scaffold285 TRF Tandem_Repeat 262037 262100 74 + . . scaffold286 GLEAN mRNA 4248 12636 0.682866 - . ID=CGI_10015954; scaffold286 TRF Tandem_Repeat 4583 4630 96 + . . scaffold286 WUBlastX LINE_L2 6874 7107 95 + . . scaffold286 GLEAN promoter 12146 13145 0.999372 + . ID=CGI_10015955; scaffold286 GLEAN promoter 12637 13636 0.682866 - . ID=CGI_10015954; scaffold286 GLEAN mRNA 13146 13502 0.999372 + . ID=CGI_10015955; scaffold286 TRF Tandem_Repeat 14041 14117 145 + . . scaffold286 WUBlastX LINE_L1-Tx1 16602 16874 37 + . . scaffold286 WUBlastX LTR_Ngaro 27445 28056 353 - . . scaffold286 WUBlastX LTR_Ngaro 28043 28972 184 - . . scaffold286 WUBlastX LTR_Ngaro 28365 28706 258 - . . scaffold286 WUBlastX LTR_Ngaro 28694 29110 34 - . . scaffold286 TRF Tandem_Repeat 43566 43670 122 + . . scaffold286 GLEAN mRNA 48554 49086 1 - . ID=CGI_10015957; scaffold286 GLEAN promoter 49087 50086 1 - . ID=CGI_10015957; scaffold286 TRF Tandem_Repeat 68417 68537 95 + . . scaffold286 GLEAN promoter 69101 70100 0.990881 + . ID=CGI_10015958; scaffold286 GLEAN mRNA 70101 79780 0.990881 + . ID=CGI_10015958; scaffold286 TRF Tandem_Repeat 71327 71374 96 + . . scaffold286 WUBlastX LINE_L1-Tx1 71809 72180 72 - . . scaffold286 WUBlastX DNA_TcMar-Tc1 75998 76087 37 - . . scaffold286 WUBlastX DNA_TcMar-Tc1 76096 76530 219 - . . scaffold286 WUBlastX DNA_TcMar-Tc1 76530 76964 107 - . . scaffold286 WUBlastX LINE_L1-Tx1 84752 87985 1493 - . . scaffold286 WUBlastX LINE_L1-Tx1 88148 88195 20 - . . scaffold286 TRF Tandem_Repeat 101049 101093 90 + . . scaffold286 GLEAN mRNA 101905 133971 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LINE_RTE-X 102430 103440 56 + . . scaffold286 WUBlastX LINE_L2 103377 103868 69 + . . scaffold286 WUBlastX LINE_RTE-X 103461 103925 338 + . . scaffold286 WUBlastX LINE_RTE-X 103928 104506 350 + . . scaffold286 WUBlastX LINE_RTE-X 104479 104985 104 + . . scaffold286 WUBlastX LINE_RTE-X 104482 104895 149 + . . scaffold286 WUBlastX LINE_RTE-X 105502 105867 63 + . . scaffold286 WUBlastX LINE_RTE-X 105583 105765 73 + . . scaffold286 TRF Tandem_Repeat 111174 111350 128 + . . scaffold286 TRF Tandem_Repeat 111351 112483 1395 + . . scaffold286 TRF Tandem_Repeat 111351 112814 1477 + . . scaffold286 TRF Tandem_Repeat 112270 112814 138 + . . scaffold286 TRF Tandem_Repeat 112487 112814 154 + . . scaffold286 TRF Tandem_Repeat 124338 124372 70 + . . scaffold286 TRF Tandem_Repeat 126510 126563 108 + . . scaffold286 TRF Tandem_Repeat 131114 131238 181 + . . scaffold286 GLEAN promoter 133972 134971 0.984811 - . ID=CGI_10015959; scaffold286 WUBlastX LTR_Gypsy 141346 142326 61 + . . scaffold286 WUBlastX LTR_Gypsy 141631 143955 245 + . . scaffold286 WUBlastX LTR_Gypsy 142714 143949 503 + . . scaffold286 WUBlastX LTR_Gypsy-Cigr 143987 146368 1296 + . . scaffold286 GLEAN promoter 145875 146874 0.99961 + . ID=CGI_10015960; scaffold286 GLEAN mRNA 146875 147561 0.99961 + . ID=CGI_10015960; scaffold286 GLEAN mRNA 149274 159610 0.543706 - . ID=CGI_10015961; scaffold286 WUBlastX DNA_TcMar-Marin 155304 155642 64 + . . scaffold286 WUBlastX DNA_TcMar-Marin 157244 157441 41 + . . scaffold286 TRF Tandem_Repeat 159110 159155 64 + . . scaffold286 TRF Tandem_Repeat 159114 159154 66 + . . scaffold286 GLEAN promoter 159611 160610 0.543706 - . ID=CGI_10015961; scaffold286 TRF Tandem_Repeat 162144 162192 98 + . . scaffold286 WUBlastX DNA 162466 163332 92 - . . scaffold286 WUBlastX DNA_Zator 162919 163332 152 - . . scaffold286 WUBlastX DNA_Zator 163344 163571 110 - . . scaffold286 WUBlastX DNA_Zator 163584 163748 28 - . . scaffold286 WUBlastX DNA_Zator 163614 163781 58 - . . scaffold286 WUBlastX DNA_Zator 163777 164097 216 - . . scaffold286 WUBlastX DNA_Zator 164076 164507 96 - . . scaffold286 WUBlastX DNA_Zator 164756 164992 53 - . . scaffold286 TRF Tandem_Repeat 168665 168852 114 + . . scaffold286 TRF Tandem_Repeat 168665 168852 202 + . . scaffold286 TRF Tandem_Repeat 168868 169021 150 + . . scaffold286 GLEAN mRNA 172358 173602 0.99967 - . ID=CGI_10015962; scaffold286 GLEAN promoter 173603 174602 0.99967 - . ID=CGI_10015962; scaffold286 GLEAN promoter 180341 181340 0.601415 + . ID=CGI_10015963; scaffold286 GLEAN mRNA 181341 181673 0.601415 + . ID=CGI_10015963; scaffold286 TRF Tandem_Repeat 182240 182516 425 + . . scaffold286 GLEAN mRNA 182912 187198 0.775448 - . ID=CGI_10015964; scaffold286 WUBlastX LTR_Gypsy 183216 183932 129 - . . scaffold286 WUBlastX LTR_Gypsy 183393 183893 134 - . . scaffold286 GLEAN promoter 187199 188198 0.775448 - . ID=CGI_10015964; scaffold286 TRF Tandem_Repeat 193085 193127 54 + . . scaffold286 TRF Tandem_Repeat 194243 194272 60 + . . scaffold286 WUBlastX LTR_DIRS 194474 194674 66 - . . scaffold286 WUBlastX LTR_DIRS 195028 195144 28 - . . scaffold286 WUBlastX LTR_DIRS 195230 195553 52 - . . scaffold286 WUBlastX LTR_DIRS 195236 195508 112 - . . scaffold286 WUBlastX LTR_DIRS 195663 195950 54 - . . scaffold286 WUBlastX LTR_DIRS 195908 196357 91 - . . scaffold286 WUBlastX LTR_DIRS 195977 197413 209 - . . scaffold286 WUBlastX LINE_Proto2 198803 199036 36 + . . scaffold286 WUBlastX LINE_L2-Hydra 199039 199497 67 + . . scaffold286 WUBlastX LINE_RTE-X 199506 199817 41 + . . scaffold286 WUBlastX LINE_I 199638 199793 45 + . . scaffold286 WUBlastX LINE_RTE-BovB 199721 200236 68 + . . scaffold286 WUBlastX LINE_L2 199784 200119 125 + . . scaffold286 WUBlastX LINE_I 199793 200182 103 + . . scaffold286 WUBlastX LINE_L2-Hydra 200595 200630 20 + . . scaffold286 WUBlastX LINE_L1 203936 204298 36 + . . scaffold286 WUBlastX LINE_L1-Tx1 204032 204853 246 + . . scaffold286 WUBlastX LINE_L1-Tx1 204927 205145 90 + . . scaffold286 WUBlastX LINE_L1 204927 205184 88 + . . scaffold286 WUBlastX LINE_L1 205232 205339 25 + . . scaffold286 GLEAN promoter 206114 207113 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 206290 206607 29 + . . scaffold286 WUBlastX DNA_P 206296 206550 93 + . . scaffold286 GLEAN mRNA 207114 209601 0.577193 + . ID=CGI_10015965; scaffold286 WUBlastX DNA_Kolobok 207676 208011 173 + . . scaffold286 WUBlastX DNA_Kolobok 208129 208362 67 + . . scaffold286 WUBlastX DNA_Kolobok 208168 208365 121 + . . scaffold286 WUBlastX DNA_Kolobok 208522 208674 61 + . . scaffold286 WUBlastX DNA_Kolobok 208534 208731 49 + . . scaffold286 WUBlastX DNA_Kolobok 208878 209075 60 + . . scaffold286 WUBlastX DNA_Kolobok 208881 209042 84 + . . scaffold286 WUBlastX DNA_Kolobok 209128 209268 52 + . . scaffold286 TRF Tandem_Repeat 214034 214083 100 + . . scaffold286 TRF Tandem_Repeat 217043 217152 96 + . . scaffold286 TRF Tandem_Repeat 217044 217145 59 + . . scaffold286 WUBlastX DNA_Crypton 224236 225177 125 + . . scaffold286 TRF Tandem_Repeat 229989 230575 517 + . . scaffold286 TRF Tandem_Repeat 247903 247949 94 + . . scaffold286 TRF Tandem_Repeat 248044 248612 674 + . . scaffold286 TRF Tandem_Repeat 249699 249749 66 + . . scaffold286 TRF Tandem_Repeat 251770 252644 963 + . . scaffold286 TRF Tandem_Repeat 254250 254307 71 + . . scaffold286 TRF Tandem_Repeat 254250 254307 71 + . . scaffold286 TRF Tandem_Repeat 254250 254307 71 + . . scaffold286 GLEAN mRNA 282191 289004 0.700364 - . ID=CGI_10015966; scaffold286 WUBlastX LTR_Pao 282687 283715 916 - . . scaffold286 WUBlastX LTR_Pao 283721 284821 735 - . . scaffold286 WUBlastX LTR_Pao 284821 285438 442 - . . scaffold286 WUBlastX LTR_Pao 285429 287246 1125 - . . scaffold286 WUBlastX LTR_Pao 287296 288240 247 - . . scaffold286 WUBlastX LTR_Pao 288247 288477 124 - . . scaffold286 WUBlastX LTR_Pao 288283 288570 283 - . . scaffold286 WUBlastX LTR_Pao 288316 288621 183 - . . scaffold286 WUBlastX LTR_Pao 288316 288804 83 - . . scaffold286 GLEAN promoter 289005 290004 0.700364 - . ID=CGI_10015966; scaffold286 GLEAN mRNA 290308 290718 0.644358 - . ID=CGI_10015967; scaffold286 GLEAN promoter 290719 291718 0.644358 - . ID=CGI_10015967; scaffold286 WUBlastX LTR_Gypsy 290965 290994 20 - . . scaffold286 WUBlastX LTR_Gypsy-Cigr 291097 291141 29 - . . scaffold286 WUBlastX LTR_Gypsy 291116 291325 24 - . . scaffold286 WUBlastX LTR_Gypsy 291257 291349 29 - . . scaffold286 WUBlastX LTR_Gypsy 291263 291325 36 - . . scaffold286 WUBlastX LTR_Gypsy 291448 291801 232 - . . scaffold286 WUBlastX LTR_Gypsy-Cigr 291794 292048 167 - . . scaffold286 TRF Tandem_Repeat 314599 314652 74 + . . scaffold286 GLEAN mRNA 314769 319211 0.999531 - . ID=CGI_10015968; scaffold286 GLEAN promoter 319212 320211 0.999531 - . ID=CGI_10015968; scaffold286 TRF Tandem_Repeat 321285 321318 52 + . . scaffold286 GLEAN mRNA 326845 331555 1 - . ID=CGI_10015969; scaffold286 GLEAN promoter 331556 332555 1 - . ID=CGI_10015969; scaffold286 GLEAN mRNA 334032 344979 0.999577 - . ID=CGI_10015970; scaffold286 TRF Tandem_Repeat 341206 342119 886 + . . scaffold286 GLEAN promoter 344980 345979 0.999577 - . ID=CGI_10015970; scaffold286 TRF Tandem_Repeat 350642 350682 82 + . . scaffold286 TRF Tandem_Repeat 352458 352496 78 + . . scaffold286 TRF Tandem_Repeat 354984 355018 61 + . . scaffold286 TRF Tandem_Repeat 372273 372320 96 + . . scaffold286 WUBlastX DNA_Harbinger 380228 381151 180 - . . scaffold286 WUBlastX DNA_Harbinger 380546 381154 319 - . . scaffold286 GLEAN promoter 383118 384117 0.511161 + . ID=CGI_10015971; scaffold286 GLEAN mRNA 384118 413699 0.511161 + . ID=CGI_10015971; scaffold286 TRF Tandem_Repeat 407894 407964 142 + . . scaffold286 TRF Tandem_Repeat 409828 409875 96 + . . scaffold286 GLEAN promoter 413901 414900 0.481475 + . ID=CGI_10015972; scaffold286 GLEAN mRNA 414901 416625 0.481475 + . ID=CGI_10015972; scaffold286 GLEAN mRNA 423114 437338 0.999999 - . ID=CGI_10015973; scaffold286 TRF Tandem_Repeat 425794 427148 796 + . . scaffold286 TRF Tandem_Repeat 425797 427145 934 + . . scaffold286 TRF Tandem_Repeat 425797 427145 916 + . . scaffold286 GLEAN promoter 432158 433157 0.525246 + . ID=CGI_10015974; scaffold286 GLEAN mRNA 433158 447481 0.525246 + . ID=CGI_10015974; scaffold286 WUBlastX DNA_TcMar-Tc1 434257 434424 66 - . . scaffold286 WUBlastX DNA_TcMar-Tc1 435099 435179 26 - . . scaffold286 WUBlastX DNA_TcMar-Tc1 435123 435191 38 - . . scaffold286 WUBlastX DNA_TcMar-Tc1 435167 435682 161 - . . scaffold286 GLEAN promoter 437339 438338 0.999999 - . ID=CGI_10015973; scaffold286 TRF Tandem_Repeat 441313 442817 2237 + . . scaffold286 TRF Tandem_Repeat 443015 443087 76 + . . scaffold286 TRF Tandem_Repeat 443015 443088 60 + . . scaffold286 TRF Tandem_Repeat 443018 443072 74 + . . scaffold286 WUBlastX DNA_Harbinger 444857 445021 66 - . . scaffold28612 GLEAN mRNA 140 4989 0.777732 - . ID=CGI_10000455; scaffold28612 GLEAN promoter 4990 5768 0.777732 - . ID=CGI_10000455; scaffold28672 GLEAN mRNA 2923 3549 0.999999 - . ID=CGI_10000468; scaffold28672 GLEAN promoter 3550 4549 0.999999 - . ID=CGI_10000468; scaffold287 TRF Tandem_Repeat 314 340 54 + . . scaffold287 WUBlastX DNA_MuDR 756 1013 73 + . . scaffold287 WUBlastX DNA_MuDR 795 1052 99 + . . scaffold287 GLEAN promoter 18816 19815 0.999744 + . ID=CGI_10003507; scaffold287 GLEAN mRNA 19816 25161 0.999744 + . ID=CGI_10003507; scaffold287 WUBlastX LINE_RTE-X 32051 32779 170 - . . scaffold287 TRF Tandem_Repeat 40976 41002 54 + . . scaffold287 TRF Tandem_Repeat 42042 42217 185 + . . scaffold287 WUBlastX LINE_L1 61424 62014 129 + . . scaffold287 WUBlastX LINE_L1-Tx1 61577 62461 225 + . . scaffold287 WUBlastX LINE_L1 62393 62533 25 + . . scaffold287 WUBlastX LINE_L1-Tx1 62529 62843 22 + . . scaffold287 WUBlastX LINE_L1 63015 63239 27 + . . scaffold287 WUBlastX LINE_RTE-X 66523 66894 62 - . . scaffold287 WUBlastX LINE_RTE-X 66583 66927 79 - . . scaffold287 WUBlastX LTR_Ngaro 69285 69866 365 - . . scaffold287 WUBlastX LTR_Ngaro 69859 70680 171 - . . scaffold287 WUBlastX LTR_Ngaro 70120 70809 280 - . . scaffold287 WUBlastX DNA_Harbinger 73561 74505 194 - . . scaffold287 WUBlastX DNA_Harbinger 73639 74664 184 - . . scaffold28720 GLEAN promoter 1 348 1 + . ID=CGI_10000456; scaffold28720 GLEAN mRNA 349 2038 1 + . ID=CGI_10000456; scaffold28720 GLEAN mRNA 3692 5692 0.999979 - . ID=CGI_10000457; scaffold28720 GLEAN promoter 5693 5800 0.999979 - . ID=CGI_10000457; scaffold288 GLEAN promoter 1 238 0.69447 + . ID=CGI_10020652; scaffold288 GLEAN mRNA 239 850 0.69447 + . ID=CGI_10020652; scaffold288 GLEAN promoter 6263 7262 0.942947 + . ID=CGI_10020653; scaffold288 GLEAN mRNA 7263 20009 0.942947 + . ID=CGI_10020653; scaffold288 WUBlastX LTR_Gypsy 15326 15670 75 - . . scaffold288 TRF Tandem_Repeat 16679 16977 167 + . . scaffold288 TRF Tandem_Repeat 16838 16984 151 + . . scaffold288 TRF Tandem_Repeat 17535 17625 132 + . . scaffold288 GLEAN mRNA 26051 30322 1 - . ID=CGI_10020655; scaffold288 GLEAN promoter 30323 31322 1 - . ID=CGI_10020655; scaffold288 GLEAN promoter 31315 32314 0.996603 + . ID=CGI_10020656; scaffold288 GLEAN mRNA 32315 35336 0.996603 + . ID=CGI_10020656; scaffold288 TRF Tandem_Repeat 32463 32513 102 + . . scaffold288 WUBlastX LINE_CR1 36310 36402 29 + . . scaffold288 WUBlastX LINE_L2 36452 36607 34 + . . scaffold288 WUBlastX LINE_CR1-L2 36476 36676 52 + . . scaffold288 GLEAN promoter 37387 38386 0.651135 + . ID=CGI_10020657; scaffold288 GLEAN mRNA 38387 49127 0.651135 + . ID=CGI_10020657; scaffold288 WUBlastX LINE_CR1-L2 39052 39126 28 - . . scaffold288 WUBlastX LINE_L2 39081 39656 158 - . . scaffold288 WUBlastX LINE_CR1 39402 39707 61 - . . scaffold288 TRF Tandem_Repeat 49897 49945 55 + . . scaffold288 WUBlastX LTR_Ngaro 50262 50429 102 + . . scaffold288 TRF Tandem_Repeat 55411 55477 100 + . . scaffold288 WUBlastX LINE_Penelope 63338 63712 255 + . . scaffold288 TRF Tandem_Repeat 96846 96886 73 + . . scaffold288 TRF Tandem_Repeat 97397 97463 71 + . . scaffold288 TRF Tandem_Repeat 99346 99438 172 + . . scaffold288 WUBlastX LINE_RTE-X 104780 105199 32 + . . scaffold288 TRF Tandem_Repeat 113513 113562 57 + . . scaffold288 TRF Tandem_Repeat 118496 118563 66 + . . scaffold288 GLEAN mRNA 119793 142586 0.674065 - . ID=CGI_10020658; scaffold288 TRF Tandem_Repeat 120260 120311 104 + . . scaffold288 WUBlastX LINE_L1-Tx1 136387 137262 29 - . . scaffold288 WUBlastX LINE_L1-Tx1 137358 137657 80 - . . scaffold288 WUBlastX LINE_L1-Tx1 137379 137720 36 - . . scaffold288 WUBlastX LINE_L1-Tx1 137388 137627 122 - . . scaffold288 GLEAN promoter 142587 143586 0.674065 - . ID=CGI_10020658; scaffold288 GLEAN promoter 143555 144554 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 143853 143924 21 - . . scaffold288 WUBlastX LTR_DIRS 143927 144064 57 - . . scaffold288 WUBlastX LTR_DIRS? 144055 144291 64 - . . scaffold288 GLEAN mRNA 144555 164915 0.948447 + . ID=CGI_10020659; scaffold288 WUBlastX LTR_DIRS 145203 145346 47 - . . scaffold288 WUBlastX LTR_DIRS 145366 145617 96 - . . scaffold288 WUBlastX LTR_DIRS 145859 146263 24 - . . scaffold288 WUBlastX DNA_TcMar-Tc1 158671 159126 262 - . . scaffold288 WUBlastX DNA_TcMar-Tc1 159110 159565 195 - . . scaffold288 WUBlastX DNA_TcMar-Tc1 159565 159654 25 - . . scaffold288 TRF Tandem_Repeat 160944 160986 86 + . . scaffold288 GLEAN mRNA 165543 215886 0.392804 - . ID=CGI_10020660; scaffold288 WUBlastX LTR_Pao 168336 169019 68 + . . scaffold288 WUBlastX LTR_Pao 168714 169016 85 + . . scaffold288 TRF Tandem_Repeat 180591 180627 56 + . . scaffold288 WUBlastX DNA_Harbinger 207804 208109 121 - . . scaffold288 WUBlastX DNA_Harbinger 207813 208184 107 - . . scaffold288 WUBlastX LINE_RTE-BovB 208911 209609 71 - . . scaffold288 WUBlastX LINE_L1-Tx1 209031 209609 375 - . . scaffold288 WUBlastX LINE_L1-Tx1 209594 209788 34 - . . scaffold288 WUBlastX LINE_L1-Tx1 209609 209740 57 - . . scaffold288 WUBlastX LINE_L1-Tx1 209609 209719 60 - . . scaffold288 WUBlastX LINE_L1 210528 210878 81 - . . scaffold288 WUBlastX LINE_L1 210555 210725 91 - . . scaffold288 WUBlastX LINE_L1-Tx1 210776 211132 102 - . . scaffold288 TRF Tandem_Repeat 214577 215924 1306 + . . scaffold288 TRF Tandem_Repeat 215242 215907 407 + . . scaffold288 GLEAN promoter 215887 216886 0.392804 - . ID=CGI_10020660; scaffold288 GLEAN mRNA 217491 218516 0.499995 - . ID=CGI_10020661; scaffold288 GLEAN promoter 218517 219516 0.499995 - . ID=CGI_10020661; scaffold288 TRF Tandem_Repeat 221358 221429 80 + . . scaffold288 WUBlastX LINE_Penelope 224261 224623 82 - . . scaffold288 TRF Tandem_Repeat 226496 226537 84 + . . scaffold288 TRF Tandem_Repeat 226921 226948 56 + . . scaffold288 WUBlastX LTR_Gypsy 228978 229586 65 + . . scaffold288 WUBlastX DNA_Maverick 229104 230204 435 + . . scaffold288 WUBlastX LTR_Gypsy 230314 230490 24 + . . scaffold288 WUBlastX DNA_Maverick 230516 230611 31 + . . scaffold288 WUBlastX DNA_Maverick 231089 232381 655 + . . scaffold288 WUBlastX DNA_Maverick 232390 232797 121 + . . scaffold288 WUBlastX DNA_Maverick 232390 232896 50 + . . scaffold288 WUBlastX DNA_Maverick 232390 232671 123 + . . scaffold288 WUBlastX DNA_Maverick 234038 234448 46 + . . scaffold288 WUBlastX DNA_Maverick 234083 234364 91 + . . scaffold288 WUBlastX DNA_Maverick 234101 234421 74 + . . scaffold288 GLEAN promoter 236841 237840 1 + . ID=CGI_10020662; scaffold288 GLEAN mRNA 237841 242192 1 + . ID=CGI_10020662; scaffold288 TRF Tandem_Repeat 253538 253586 82 + . . scaffold288 GLEAN mRNA 262430 263623 0.6496 - . ID=CGI_10020663; scaffold288 GLEAN promoter 263624 264623 0.6496 - . ID=CGI_10020663; scaffold288 TRF Tandem_Repeat 264831 264865 61 + . . scaffold288 TRF Tandem_Repeat 269080 269131 59 + . . scaffold288 GLEAN mRNA 301392 304025 0.973274 - . ID=CGI_10020664; scaffold288 GLEAN promoter 304026 305025 0.973274 - . ID=CGI_10020664; scaffold288 TRF Tandem_Repeat 308893 308935 86 + . . scaffold288 TRF Tandem_Repeat 316402 316593 84 + . . scaffold288 TRF Tandem_Repeat 316607 318170 776 + . . scaffold288 TRF Tandem_Repeat 331425 331510 140 + . . scaffold288 TRF Tandem_Repeat 333869 334029 176 + . . scaffold288 TRF Tandem_Repeat 333869 334061 170 + . . scaffold288 TRF Tandem_Repeat 342368 342443 145 + . . scaffold288 TRF Tandem_Repeat 342738 344228 1460 + . . scaffold288 TRF Tandem_Repeat 350887 350922 63 + . . scaffold288 GLEAN promoter 352824 353823 0.965775 + . ID=CGI_10020665; scaffold288 GLEAN mRNA 353824 364865 0.965775 + . ID=CGI_10020665; scaffold288 GLEAN mRNA 367704 374017 1 - . ID=CGI_10020666; scaffold288 TRF Tandem_Repeat 369175 370180 1520 + . . scaffold288 GLEAN promoter 374018 375017 1 - . ID=CGI_10020666; scaffold288 GLEAN mRNA 374486 381317 0.791313 - . ID=CGI_10020667; scaffold288 TRF Tandem_Repeat 377389 377439 102 + . . scaffold288 GLEAN promoter 381318 382317 0.791313 - . ID=CGI_10020667; scaffold288 GLEAN promoter 386971 387970 0.999657 + . ID=CGI_10020668; scaffold288 GLEAN mRNA 387971 390285 0.999657 + . ID=CGI_10020668; scaffold288 WUBlastX LINE_RTE-X 390827 391918 212 - . . scaffold288 TRF Tandem_Repeat 392006 392061 76 + . . scaffold288 WUBlastX LINE_RTE-X 394065 394787 133 - . . scaffold288 WUBlastX LINE_I 394578 394877 59 - . . scaffold288 WUBlastX LINE_L1 394845 395279 235 - . . scaffold288 WUBlastX LINE_L1 394929 395378 64 - . . scaffold288 WUBlastX LINE_RTE-X 395460 395543 22 - . . scaffold288 WUBlastX LINE_RTE-X 395548 396399 141 - . . scaffold288 WUBlastX LINE_RTE-X 395686 396384 170 - . . scaffold288 WUBlastX LINE_L1 396442 397326 278 - . . scaffold288 GLEAN promoter 397368 398367 0.999006 + . ID=CGI_10020669; scaffold288 GLEAN mRNA 398368 420361 0.999006 + . ID=CGI_10020669; scaffold288 TRF Tandem_Repeat 402265 402292 56 + . . scaffold288 TRF Tandem_Repeat 404680 405168 562 + . . scaffold288 TRF Tandem_Repeat 408426 408780 436 + . . scaffold288 TRF Tandem_Repeat 413223 413286 92 + . . scaffold288 GLEAN mRNA 423304 426718 1 - . ID=CGI_10020670; scaffold288 GLEAN promoter 426719 427718 1 - . ID=CGI_10020670; scaffold288 GLEAN promoter 428072 429071 1 + . ID=CGI_10020671; scaffold288 GLEAN mRNA 429072 431673 1 + . ID=CGI_10020671; scaffold288 TRF Tandem_Repeat 430267 430323 51 + . . scaffold288 GLEAN mRNA 434054 439643 0.992768 - . ID=CGI_10020672; scaffold288 TRF Tandem_Repeat 434360 434412 81 + . . scaffold288 TRF Tandem_Repeat 434373 434412 53 + . . scaffold288 GLEAN promoter 439644 440643 0.992768 - . ID=CGI_10020672; scaffold288 GLEAN promoter 443639 444638 1 + . ID=CGI_10020673; scaffold288 GLEAN mRNA 444639 447534 1 + . ID=CGI_10020673; scaffold288 TRF Tandem_Repeat 453138 453275 82 + . . scaffold288 TRF Tandem_Repeat 453239 453330 53 + . . scaffold288 TRF Tandem_Repeat 458062 458128 127 + . . scaffold288 TRF Tandem_Repeat 461230 461273 88 + . . scaffold288 GLEAN mRNA 463961 469007 0.999287 - . ID=CGI_10020674; scaffold288 TRF Tandem_Repeat 465043 465080 76 + . . scaffold288 GLEAN promoter 469008 470007 0.999287 - . ID=CGI_10020674; scaffold288 GLEAN promoter 472631 473630 0.524575 + . ID=CGI_10020675; scaffold288 GLEAN mRNA 473631 487014 0.524575 + . ID=CGI_10020675; scaffold288 TRF Tandem_Repeat 481410 481447 76 + . . scaffold288 TRF Tandem_Repeat 484394 484464 133 + . . scaffold288 TRF Tandem_Repeat 488094 489055 1233 + . . scaffold288 TRF Tandem_Repeat 493026 495032 2520 + . . scaffold288 GLEAN promoter 496320 497319 0.650682 + . ID=CGI_10020676; scaffold288 GLEAN mRNA 497320 512037 0.650682 + . ID=CGI_10020676; scaffold288 TRF Tandem_Repeat 501053 501099 94 + . . scaffold288 TRF Tandem_Repeat 502576 502648 137 + . . scaffold288 TRF Tandem_Repeat 503532 503567 72 + . . scaffold288 TRF Tandem_Repeat 508978 509289 438 + . . scaffold288 TRF Tandem_Repeat 508978 509289 406 + . . scaffold288 TRF Tandem_Repeat 510540 510583 70 + . . scaffold288 TRF Tandem_Repeat 511799 511842 70 + . . scaffold288 TRF Tandem_Repeat 516251 516357 56 + . . scaffold288 TRF Tandem_Repeat 516278 516346 60 + . . scaffold288 GLEAN promoter 518303 519302 0.877428 + . ID=CGI_10020677; scaffold288 GLEAN mRNA 519303 545341 0.877428 + . ID=CGI_10020677; scaffold288 TRF Tandem_Repeat 522235 522272 69 + . . scaffold288 GLEAN mRNA 524130 546899 0.751787 - . ID=CGI_10020678; scaffold288 TRF Tandem_Repeat 528627 529382 1148 + . . scaffold288 GLEAN promoter 546900 547899 0.751787 - . ID=CGI_10020678; scaffold288 GLEAN mRNA 552030 563530 0.999999 - . ID=CGI_10020679; scaffold288 TRF Tandem_Repeat 556817 556859 86 + . . scaffold288 GLEAN promoter 563531 564530 0.999999 - . ID=CGI_10020679; scaffold288 GLEAN promoter 572065 573064 1 + . ID=CGI_10020680; scaffold288 GLEAN mRNA 573065 576663 1 + . ID=CGI_10020680; scaffold288 GLEAN promoter 579934 580933 0.983686 + . ID=CGI_10020681; scaffold288 GLEAN mRNA 580934 593915 0.983686 + . ID=CGI_10020681; scaffold288 TRF Tandem_Repeat 584778 584851 148 + . . scaffold288 TRF Tandem_Repeat 591087 591149 119 + . . scaffold288 WUBlastX LTR_DIRS 594483 595406 361 - . . scaffold288 WUBlastX LTR_DIRS 595301 597343 804 - . . scaffold288 WUBlastX LTR_DIRS 595646 597325 996 - . . scaffold288 GLEAN mRNA 597379 599061 0.999238 - . ID=CGI_10020682; scaffold288 WUBlastX LTR_Gypsy 597625 597768 26 - . . scaffold288 WUBlastX LTR_Gypsy 598102 598224 31 - . . scaffold288 GLEAN promoter 599062 600061 0.999238 - . ID=CGI_10020682; scaffold288 GLEAN mRNA 601515 603042 0.999661 - . ID=CGI_10020683; scaffold288 GLEAN promoter 603043 604042 0.999661 - . ID=CGI_10020683; scaffold288 GLEAN promoter 604443 605442 0.805614 + . ID=CGI_10020684; scaffold288 GLEAN mRNA 605443 609041 0.805614 + . ID=CGI_10020684; scaffold288 TRF Tandem_Repeat 606018 606053 72 + . . scaffold288 GLEAN mRNA 609247 609975 1 - . ID=CGI_10020685; scaffold288 GLEAN promoter 609976 610975 1 - . ID=CGI_10020685; scaffold288 GLEAN promoter 611380 612379 1 + . ID=CGI_10020686; scaffold288 GLEAN mRNA 612380 614600 1 + . ID=CGI_10020686; scaffold288 TRF Tandem_Repeat 612664 612705 75 + . . scaffold288 TRF Tandem_Repeat 612705 612731 54 + . . scaffold288 GLEAN mRNA 617164 636803 0.99909 - . ID=CGI_10020687; scaffold288 GLEAN promoter 636804 637803 0.99909 - . ID=CGI_10020687; scaffold288 GLEAN promoter 637300 638299 0.99996 + . ID=CGI_10020688; scaffold288 GLEAN mRNA 638300 643826 0.99996 + . ID=CGI_10020688; scaffold288 TRF Tandem_Repeat 638510 638579 133 + . . scaffold288 TRF Tandem_Repeat 645863 645913 102 + . . scaffold288 WUBlastX LINE_RTE-X 652640 653167 83 - . . scaffold288 WUBlastX LINE_RTE-X 652775 653251 122 - . . scaffold288 WUBlastX LINE_RTE-X 653217 653594 151 - . . scaffold288 WUBlastX LINE_RTE-X 653256 653687 51 - . . scaffold288 WUBlastX LINE_RTE-X 653256 653810 20 - . . scaffold288 WUBlastX LTR_Gypsy 655146 655253 23 + . . scaffold289 GLEAN promoter 9849 10848 0.889915 + . ID=CGI_10000981; scaffold289 GLEAN mRNA 10849 12231 0.889915 + . ID=CGI_10000981; scaffold29 WUBlastX DNA_Zator 2 883 460 - . . scaffold29 TRF Tandem_Repeat 11729 11797 129 + . . scaffold29 WUBlastX LINE_RTE-X 12376 13347 63 - . . scaffold29 WUBlastX LINE_RTE-X 12715 13413 196 - . . scaffold29 WUBlastX LINE_RTE-X 12736 13299 221 - . . scaffold29 WUBlastX LINE_RTE-X 12754 13530 31 - . . scaffold29 WUBlastX LINE_RTE-X 14069 14260 88 + . . scaffold29 WUBlastX LINE_RTE-X 14256 15176 217 + . . scaffold29 TRF Tandem_Repeat 15616 15675 120 + . . scaffold29 GLEAN mRNA 17595 21047 0.937847 - . ID=CGI_10001774; scaffold29 TRF Tandem_Repeat 18617 19819 1618 + . . scaffold29 GLEAN promoter 21048 22047 0.937847 - . ID=CGI_10001774; scaffold290 GLEAN mRNA 4403 11154 1 - . ID=CGI_10018525; scaffold290 GLEAN promoter 11155 12154 1 - . ID=CGI_10018525; scaffold290 GLEAN promoter 21491 22490 0.99304 + . ID=CGI_10018526; scaffold290 GLEAN mRNA 22491 27081 0.99304 + . ID=CGI_10018526; scaffold290 TRF Tandem_Repeat 25297 25344 96 + . . scaffold290 GLEAN promoter 26090 27089 0.999956 + . ID=CGI_10018527; scaffold290 GLEAN mRNA 27090 28334 0.999956 + . ID=CGI_10018527; scaffold290 GLEAN mRNA 30129 35228 0.999011 - . ID=CGI_10018528; scaffold290 TRF Tandem_Repeat 31996 32154 131 + . . scaffold290 TRF Tandem_Repeat 32372 32512 129 + . . scaffold290 TRF Tandem_Repeat 32590 32716 137 + . . scaffold290 GLEAN promoter 35229 36228 0.999011 - . ID=CGI_10018528; scaffold290 GLEAN promoter 35545 36544 0.999212 + . ID=CGI_10018529; scaffold290 GLEAN mRNA 36545 43109 0.999212 + . ID=CGI_10018529; scaffold290 GLEAN mRNA 43227 50721 0.999676 - . ID=CGI_10018530; scaffold290 GLEAN promoter 50430 51429 0.815504 + . ID=CGI_10018531; scaffold290 GLEAN promoter 50722 51721 0.999676 - . ID=CGI_10018530; scaffold290 GLEAN mRNA 51430 74485 0.815504 + . ID=CGI_10018531; scaffold290 WUBlastX LINE_RTE-X 57842 58201 24 + . . scaffold290 WUBlastX LINE_RTE-X 57974 58186 52 + . . scaffold290 WUBlastX LINE_RTE-X 58007 58351 70 + . . scaffold290 WUBlastX LINE_RTE-BovB 60034 60429 109 - . . scaffold290 WUBlastX LINE_RTE-BovB 60097 60453 256 - . . scaffold290 TRF Tandem_Repeat 64602 64767 131 + . . scaffold290 GLEAN promoter 73672 74671 1 + . ID=CGI_10018532; scaffold290 GLEAN mRNA 74672 76193 1 + . ID=CGI_10018532; scaffold290 GLEAN mRNA 78200 85856 0.613006 - . ID=CGI_10018533; scaffold290 WUBlastX LINE_CR1-L2 84299 84700 23 - . . scaffold290 WUBlastX LINE_L2 84299 84592 121 - . . scaffold290 GLEAN promoter 85857 86856 0.613006 - . ID=CGI_10018533; scaffold290 TRF Tandem_Repeat 92977 93033 114 + . . scaffold290 GLEAN promoter 93181 94180 0.999874 + . ID=CGI_10018534; scaffold290 GLEAN mRNA 94181 108600 0.999874 + . ID=CGI_10018534; scaffold290 TRF Tandem_Repeat 103791 103823 66 + . . scaffold290 WUBlastX DNA_TcMar-Marin 111195 111599 240 - . . scaffold290 WUBlastX DNA_TcMar-Marin 111790 112347 323 - . . scaffold290 GLEAN mRNA 114544 117492 0.651123 - . ID=CGI_10018535; scaffold290 GLEAN promoter 117493 118492 0.651123 - . ID=CGI_10018535; scaffold290 TRF Tandem_Repeat 124909 124970 54 + . . scaffold290 TRF Tandem_Repeat 125228 125274 85 + . . scaffold290 TRF Tandem_Repeat 125991 126112 59 + . . scaffold290 TRF Tandem_Repeat 126012 126075 67 + . . scaffold290 TRF Tandem_Repeat 126020 126100 83 + . . scaffold290 TRF Tandem_Repeat 126025 126105 121 + . . scaffold290 TRF Tandem_Repeat 129464 129558 136 + . . scaffold290 TRF Tandem_Repeat 134156 134215 120 + . . scaffold290 TRF Tandem_Repeat 148074 148119 58 + . . scaffold290 TRF Tandem_Repeat 151453 151481 58 + . . scaffold290 TRF Tandem_Repeat 152991 153043 106 + . . scaffold290 GLEAN promoter 155800 156799 0.982373 + . ID=CGI_10018536; scaffold290 GLEAN mRNA 156800 158920 0.982373 + . ID=CGI_10018536; scaffold290 GLEAN promoter 160042 161041 0.803524 + . ID=CGI_10018537; scaffold290 TRF Tandem_Repeat 160137 160231 136 + . . scaffold290 GLEAN mRNA 161042 170650 0.803524 + . ID=CGI_10018537; scaffold290 TRF Tandem_Repeat 163354 163400 85 + . . scaffold290 TRF Tandem_Repeat 164616 164669 108 + . . scaffold290 TRF Tandem_Repeat 166327 166369 86 + . . scaffold290 GLEAN mRNA 174976 177216 1 - . ID=CGI_10018538; scaffold290 GLEAN promoter 177217 178216 1 - . ID=CGI_10018538; scaffold290 TRF Tandem_Repeat 178019 179140 1319 + . . scaffold290 TRF Tandem_Repeat 180794 180880 95 + . . scaffold290 TRF Tandem_Repeat 180967 181117 135 + . . scaffold290 TRF Tandem_Repeat 181153 181257 81 + . . scaffold290 TRF Tandem_Repeat 181168 181269 100 + . . scaffold290 TRF Tandem_Repeat 182547 182599 52 + . . scaffold290 GLEAN mRNA 184166 208505 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LINE_RTE-X 184643 185269 44 + . . scaffold290 WUBlastX LINE_RTE-X 184739 185245 88 + . . scaffold290 WUBlastX LINE_RTE-X 185117 185272 63 + . . scaffold290 WUBlastX LINE_RTE-X 185313 185663 28 + . . scaffold290 WUBlastX LINE_RTE-X 185610 185699 24 + . . scaffold290 WUBlastX LINE_RTE-X 187506 188252 61 + . . scaffold290 WUBlastX LINE_RTE-X 187617 188204 76 + . . scaffold290 WUBlastX LINE_RTE-X 188076 188231 63 + . . scaffold290 WUBlastX LINE_RTE-X 188272 188622 25 + . . scaffold290 WUBlastX LINE_RTE-X 188569 188658 24 + . . scaffold290 GLEAN promoter 208506 209505 0.688957 - . ID=CGI_10018539; scaffold290 WUBlastX LTR_Gypsy 209043 209279 89 + . . scaffold290 WUBlastX LTR_Gypsy 209279 209470 35 + . . scaffold290 WUBlastX LTR_Gypsy 209327 209677 197 + . . scaffold290 WUBlastX LTR_Gypsy 209794 209955 32 + . . scaffold290 WUBlastX LTR_Gypsy 209915 210334 106 + . . scaffold290 WUBlastX LTR_Gypsy 210014 210373 248 + . . scaffold290 WUBlastX LTR_Gypsy 210032 210481 76 + . . scaffold290 WUBlastX LTR_Gypsy 210465 210923 133 + . . scaffold290 WUBlastX LTR_Gypsy 210782 211402 213 + . . scaffold290 WUBlastX LTR_Gypsy 210911 213898 2592 + . . scaffold290 WUBlastX LTR_Gypsy 214297 214662 171 + . . scaffold290 WUBlastX LTR_Gypsy 214644 215234 47 + . . scaffold290 TRF Tandem_Repeat 242954 243480 576 + . . scaffold290 TRF Tandem_Repeat 242954 243474 522 + . . scaffold290 GLEAN mRNA 259059 263630 0.999676 - . ID=CGI_10018540; scaffold290 GLEAN promoter 263631 264630 0.999676 - . ID=CGI_10018540; scaffold290 TRF Tandem_Repeat 264277 264321 90 + . . scaffold290 TRF Tandem_Repeat 265959 266169 269 + . . scaffold290 TRF Tandem_Repeat 267458 267511 108 + . . scaffold290 GLEAN promoter 274515 275514 0.722571 + . ID=CGI_10018541; scaffold290 GLEAN mRNA 275515 293500 0.722571 + . ID=CGI_10018541; scaffold290 TRF Tandem_Repeat 280746 280844 153 + . . scaffold290 TRF Tandem_Repeat 285275 285312 58 + . . scaffold290 GLEAN mRNA 299535 309558 0.750452 - . ID=CGI_10018542; scaffold290 TRF Tandem_Repeat 303141 303168 56 + . . scaffold290 TRF Tandem_Repeat 303166 303205 80 + . . scaffold290 TRF Tandem_Repeat 303204 303237 68 + . . scaffold290 TRF Tandem_Repeat 307117 307179 108 + . . scaffold290 TRF Tandem_Repeat 307214 307247 68 + . . scaffold290 GLEAN promoter 309559 310558 0.750452 - . ID=CGI_10018542; scaffold290 WUBlastX LINE_L2 309938 310240 39 + . . scaffold290 WUBlastX LINE_L2 310028 310240 62 + . . scaffold290 WUBlastX LINE_L1 310082 310255 81 + . . scaffold290 TRF Tandem_Repeat 313881 313917 74 + . . scaffold290 GLEAN mRNA 315542 316105 0.733371 - . ID=CGI_10018543; scaffold290 GLEAN promoter 316106 317105 0.733371 - . ID=CGI_10018543; scaffold290 GLEAN mRNA 322589 333274 0.999505 - . ID=CGI_10018544; scaffold290 GLEAN promoter 333275 334274 0.999505 - . ID=CGI_10018544; scaffold290 WUBlastX LINE_L2 334022 334111 21 + . . scaffold290 WUBlastX LINE_L1 334054 334119 23 + . . scaffold290 WUBlastX LINE_L1-Tx1 334071 334124 27 + . . scaffold290 WUBlastX LINE_L1-Tx1 334909 335016 20 + . . scaffold290 WUBlastX LINE_L1-Tx1 334931 335266 96 + . . scaffold290 WUBlastX LINE_L1-Tx1 334988 335254 194 + . . scaffold290 WUBlastX LINE_L1 335259 335516 195 + . . scaffold290 WUBlastX LINE_L1-Tx1 335500 336189 288 + . . scaffold290 WUBlastX LINE_L1-Tx1 336036 337244 298 + . . scaffold290 WUBlastX LINE_R2 337732 337791 20 + . . scaffold290 WUBlastX LINE_L1-Tx1 337958 340603 1123 + . . scaffold290 WUBlastX LINE_Penelope 340805 341173 79 - . . scaffold290 TRF Tandem_Repeat 341251 341320 115 + . . scaffold290 TRF Tandem_Repeat 346562 347374 764 + . . scaffold290 TRF Tandem_Repeat 348757 348859 52 + . . scaffold290 TRF Tandem_Repeat 348757 348859 52 + . . scaffold290 TRF Tandem_Repeat 350092 350199 162 + . . scaffold290 GLEAN promoter 364002 365001 0.801717 + . ID=CGI_10018545; scaffold290 TRF Tandem_Repeat 364127 364274 217 + . . scaffold290 GLEAN mRNA 365002 367993 0.801717 + . ID=CGI_10018545; scaffold290 TRF Tandem_Repeat 369770 369927 226 + . . scaffold290 TRF Tandem_Repeat 370421 370908 870 + . . scaffold290 GLEAN promoter 371386 372385 1 + . ID=CGI_10018546; scaffold290 GLEAN mRNA 372386 375144 1 + . ID=CGI_10018546; scaffold290 GLEAN promoter 374968 375967 0.907529 + . ID=CGI_10018547; scaffold290 GLEAN mRNA 375968 379825 0.907529 + . ID=CGI_10018547; scaffold290 GLEAN promoter 378893 379892 0.916033 + . ID=CGI_10018548; scaffold290 GLEAN mRNA 379893 384384 0.916033 + . ID=CGI_10018548; scaffold290 TRF Tandem_Repeat 386801 387159 237 + . . scaffold290 TRF Tandem_Repeat 389824 389871 87 + . . scaffold290 TRF Tandem_Repeat 390761 390785 50 + . . scaffold290 GLEAN promoter 392390 393389 0.99629 + . ID=CGI_10018549; scaffold290 GLEAN mRNA 393390 421679 0.99629 + . ID=CGI_10018549; scaffold290 TRF Tandem_Repeat 394133 394177 90 + . . scaffold290 WUBlastX LINE_RTE-X 394912 395367 45 + . . scaffold290 WUBlastX LINE_RTE-X 395086 395361 74 + . . scaffold290 TRF Tandem_Repeat 397481 397557 127 + . . scaffold290 TRF Tandem_Repeat 412132 412185 101 + . . scaffold290 TRF Tandem_Repeat 422426 422479 67 + . . scaffold290 TRF Tandem_Repeat 422431 422476 67 + . . scaffold290 WUBlastX LTR_Gypsy 429984 432083 1036 - . . scaffold290 WUBlastX LTR_Gypsy 431598 432251 45 - . . scaffold290 WUBlastX LTR_Gypsy 432135 432488 36 - . . scaffold290 WUBlastX LTR_Gypsy 432942 432995 21 - . . scaffold290 GLEAN mRNA 433829 434095 0.99983 - . ID=CGI_10018550; scaffold290 GLEAN promoter 434096 435095 0.99983 - . ID=CGI_10018550; scaffold290 WUBlastX DNA_TcMar-Marin 444996 445154 31 + . . scaffold290 WUBlastX DNA_TcMar-Marin 445032 445151 50 + . . scaffold290 WUBlastX DNA_TcMar-Marin 445166 445423 37 + . . scaffold290 WUBlastX DNA_TcMar-Marin 445364 445435 58 + . . scaffold290 WUBlastX DNA_TcMar-Marin 445486 445842 42 + . . scaffold290 WUBlastX DNA_TcMar-Marin 445606 445818 46 + . . scaffold290 WUBlastX DNA_TcMar-Marin 445678 445863 49 + . . scaffold290 TRF Tandem_Repeat 449271 449353 150 + . . scaffold290 TRF Tandem_Repeat 454710 454735 52 + . . scaffold290 TRF Tandem_Repeat 466732 466805 103 + . . scaffold290 TRF Tandem_Repeat 467300 467338 60 + . . scaffold290 TRF Tandem_Repeat 467517 467569 106 + . . scaffold290 TRF Tandem_Repeat 468014 468112 182 + . . scaffold290 TRF Tandem_Repeat 468161 468251 119 + . . scaffold290 TRF Tandem_Repeat 468656 468682 54 + . . scaffold290 TRF Tandem_Repeat 468850 469097 150 + . . scaffold290 TRF Tandem_Repeat 468876 468994 67 + . . scaffold290 TRF Tandem_Repeat 471140 471206 89 + . . scaffold290 GLEAN mRNA 474188 477882 0.99983 - . ID=CGI_10018551; scaffold290 GLEAN promoter 477883 478882 0.99983 - . ID=CGI_10018551; scaffold290 TRF Tandem_Repeat 484738 484783 83 + . . scaffold290 WUBlastX LINE_L2 485229 485351 91 + . . scaffold290 WUBlastX LINE_CR1-L2 485235 485381 80 + . . scaffold290 WUBlastX LINE_CR1-L2 485489 485530 21 + . . scaffold290 WUBlastX LINE_CR1-L2 486019 486294 75 + . . scaffold290 WUBlastX LTR_Ngaro 511213 511851 427 + . . scaffold290 WUBlastX LTR_Ngaro 511862 512101 100 + . . scaffold290 WUBlastX LTR_Ngaro 512077 512706 217 + . . scaffold290 WUBlastX LTR_Ngaro 512694 512963 149 + . . scaffold290 WUBlastX LINE_RTE-X 513309 513665 86 + . . scaffold290 GLEAN promoter 522053 523052 0.999911 + . ID=CGI_10018553; scaffold290 GLEAN mRNA 523053 526085 0.999911 + . ID=CGI_10018553; scaffold290 GLEAN promoter 533221 534220 0.981153 + . ID=CGI_10018554; scaffold290 WUBlastX DNA_hAT 534101 534448 75 + . . scaffold290 GLEAN mRNA 534221 539598 0.981153 + . ID=CGI_10018554; scaffold290 GLEAN promoter 539850 540849 0.999994 + . ID=CGI_10018555; scaffold290 GLEAN mRNA 540850 542750 0.999994 + . ID=CGI_10018555; scaffold290 TRF Tandem_Repeat 542777 542883 97 + . . scaffold290 TRF Tandem_Repeat 543716 543892 146 + . . scaffold290 GLEAN promoter 544890 545889 0.999676 + . ID=CGI_10018556; scaffold290 GLEAN mRNA 545890 556657 0.999676 + . ID=CGI_10018556; scaffold290 WUBlastX LTR_Gypsy 552319 552690 127 + . . scaffold290 WUBlastX LTR_Gypsy 552412 552849 95 + . . scaffold290 WUBlastX LTR_Gypsy 552412 552690 238 + . . scaffold290 WUBlastX LTR_Gypsy 552705 553031 23 + . . scaffold290 WUBlastX LTR_Gypsy 552732 552980 78 + . . scaffold290 WUBlastX LTR_Gypsy 552735 552935 92 + . . scaffold290 TRF Tandem_Repeat 553307 553360 108 + . . scaffold29000 GLEAN promoter 1 54 0.999744 + . ID=CGI_10000487; scaffold29000 GLEAN mRNA 55 4366 0.999744 + . ID=CGI_10000487; scaffold29020 GLEAN promoter 4342 5341 0.999372 + . ID=CGI_10000490; scaffold29020 GLEAN mRNA 5342 5572 0.999372 + . ID=CGI_10000490; scaffold29078 WUBlastX LTR_Pao 2 850 953 + . . scaffold29078 TRF Tandem_Repeat 2640 2695 112 + . . scaffold29078 TRF Tandem_Repeat 4333 4357 50 + . . scaffold29126 GLEAN mRNA 802 4649 1 - . ID=CGI_10000483; scaffold29126 TRF Tandem_Repeat 3861 3947 122 + . . scaffold29126 TRF Tandem_Repeat 4041 4175 76 + . . scaffold29126 WUBlastX LINE_L2 4621 5991 702 - . . scaffold29126 GLEAN promoter 4650 5649 1 - . ID=CGI_10000483; scaffold29142 WUBlastX LTR_Gypsy 782 1489 100 + . . scaffold29142 WUBlastX LTR_Gypsy 899 1591 136 + . . scaffold292 TRF Tandem_Repeat 629 678 57 + . . scaffold292 GLEAN mRNA 2596 3159 0.558395 - . ID=CGI_10003525; scaffold292 GLEAN promoter 3160 4159 0.558395 - . ID=CGI_10003525; scaffold292 GLEAN promoter 4287 5286 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_CR1 4627 5154 236 + . . scaffold292 WUBlastX LINE_Jockey 4666 5391 28 + . . scaffold292 GLEAN mRNA 5287 26747 0.497399 + . ID=CGI_10003526; scaffold292 WUBlastX LINE_L1-Tx1 5899 7074 316 + . . scaffold292 WUBlastX LINE_L1-Tx1 7052 7435 135 + . . scaffold292 WUBlastX LINE_L1 7166 7435 145 + . . scaffold292 WUBlastX LINE_L1-Tx1 7432 7944 241 + . . scaffold292 WUBlastX LINE_L1-Tx1 7438 8094 121 + . . scaffold292 WUBlastX LINE_R1 8050 8169 25 + . . scaffold292 WUBlastX DNA_hAT-Ac 8573 8698 75 + . . scaffold292 WUBlastX LTR_Pao 17968 18999 370 - . . scaffold292 WUBlastX LTR_Pao 18211 19020 697 - . . scaffold292 WUBlastX DNA_Harbinger 23605 23844 22 + . . scaffold292 GLEAN promoter 28262 29261 0.999144 + . ID=CGI_10003527; scaffold292 GLEAN mRNA 29262 46507 0.999144 + . ID=CGI_10003527; scaffold292 TRF Tandem_Repeat 34382 35112 534 + . . scaffold292 WUBlastX DNA_TcMar-Marin 37091 37468 140 + . . scaffold292 WUBlastX DNA_TcMar-Marin 37402 37758 171 + . . scaffold292 WUBlastX DNA_TcMar-Marin 37462 37749 191 + . . scaffold292 WUBlastX DNA_TcMar-Marin 37904 38086 28 + . . scaffold292 WUBlastX DNA_TcMar-Marin 37940 38083 63 + . . scaffold292 WUBlastX DNA_TcMar-Marin 38059 38349 116 + . . scaffold292 WUBlastX DNA_TcMar-Marin 38110 38349 166 + . . scaffold292 GLEAN promoter 45545 46544 0.999797 + . ID=CGI_10003528; scaffold292 GLEAN mRNA 46545 47137 0.999797 + . ID=CGI_10003528; scaffold292 TRF Tandem_Repeat 47863 47910 96 + . . scaffold292 TRF Tandem_Repeat 50340 50391 86 + . . scaffold292 TRF Tandem_Repeat 50340 50398 55 + . . scaffold292 TRF Tandem_Repeat 50341 50387 67 + . . scaffold292 GLEAN promoter 50568 51567 0.660019 + . ID=CGI_10003529; scaffold292 GLEAN mRNA 51568 72452 0.660019 + . ID=CGI_10003529; scaffold292 WUBlastX DNA_TcMar-Tc1 53781 54752 386 + . . scaffold292 WUBlastX DNA_TcMar-Stowa 54417 54845 34 + . . scaffold292 TRF Tandem_Repeat 55425 55521 85 + . . scaffold292 TRF Tandem_Repeat 55474 55648 115 + . . scaffold292 TRF Tandem_Repeat 65904 65983 151 + . . scaffold29220 GLEAN mRNA 2447 6255 0.999855 - . ID=CGI_10000525; scaffold29220 GLEAN promoter 6256 6537 0.999855 - . ID=CGI_10000525; scaffold29236 GLEAN promoter 976 1975 1 + . ID=CGI_10000503; scaffold29236 GLEAN mRNA 1976 6143 1 + . ID=CGI_10000503; scaffold29316 WUBlastX LINE_RTE-X 1454 3802 1136 - . . scaffold29316 WUBlastX LINE_L2 3554 3958 23 - . . scaffold29316 WUBlastX LINE_RTE-X 3963 5006 129 - . . scaffold29316 WUBlastX LINE_RTE-X 4164 5000 209 - . . scaffold29316 WUBlastX LINE_Jockey 4551 5156 54 - . . scaffold29334 TRF Tandem_Repeat 403 441 78 + . . scaffold29334 WUBlastX LINE_RTE-X 4254 4736 81 + . . scaffold29334 WUBlastX LINE_RTE-X 4299 4622 105 + . . scaffold29334 GLEAN promoter 4850 5849 1 + . ID=CGI_10000511; scaffold29334 TRF Tandem_Repeat 5591 5697 88 + . . scaffold29334 TRF Tandem_Repeat 5629 5655 54 + . . scaffold29334 GLEAN mRNA 5850 6217 1 + . ID=CGI_10000511; scaffold29336 GLEAN mRNA 2565 5479 0.999993 - . ID=CGI_10000522; scaffold29336 GLEAN promoter 5480 6479 0.999993 - . ID=CGI_10000522; scaffold29372 WUBlastX LTR_Ngaro 1506 2138 412 - . . scaffold29372 WUBlastX LTR_Ngaro 2146 2250 28 - . . scaffold29372 WUBlastX LTR_Ngaro 2731 2904 25 - . . scaffold29372 WUBlastX LTR_Ngaro 2827 2910 39 - . . scaffold29372 WUBlastX LTR_Ngaro 2871 3071 81 - . . scaffold29372 WUBlastX LTR_Ngaro 3395 3931 157 - . . scaffold29372 WUBlastX LTR_Ngaro 3395 3772 196 - . . scaffold29372 TRF Tandem_Repeat 4779 4810 64 + . . scaffold294 GLEAN promoter 4733 5732 0.889923 + . ID=CGI_10010327; scaffold294 GLEAN mRNA 5733 20282 0.889923 + . ID=CGI_10010327; scaffold294 TRF Tandem_Repeat 22031 23423 1586 + . . scaffold294 GLEAN mRNA 30014 31075 1 - . ID=CGI_10010328; scaffold294 GLEAN promoter 31076 32075 1 - . ID=CGI_10010328; scaffold294 TRF Tandem_Repeat 35223 36122 1106 + . . scaffold294 TRF Tandem_Repeat 35230 36125 1043 + . . scaffold294 TRF Tandem_Repeat 38969 40145 1298 + . . scaffold294 TRF Tandem_Repeat 40996 41038 59 + . . scaffold294 TRF Tandem_Repeat 47673 47709 74 + . . scaffold294 GLEAN promoter 49953 50952 0.786092 + . ID=CGI_10010329; scaffold294 GLEAN mRNA 50953 63150 0.786092 + . ID=CGI_10010329; scaffold294 TRF Tandem_Repeat 52358 52403 92 + . . scaffold294 TRF Tandem_Repeat 63844 64173 401 + . . scaffold294 TRF Tandem_Repeat 63917 64343 120 + . . scaffold294 TRF Tandem_Repeat 65812 65854 86 + . . scaffold294 TRF Tandem_Repeat 70156 70222 89 + . . scaffold294 TRF Tandem_Repeat 70715 70767 70 + . . scaffold294 TRF Tandem_Repeat 72029 72095 89 + . . scaffold294 WUBlastX LINE_L1-Tx1 81608 83107 491 - . . scaffold294 GLEAN mRNA 83284 86292 0.549751 - . ID=CGI_10010330; scaffold294 WUBlastX LINE_L1-Tx1 83899 84198 42 - . . scaffold294 GLEAN promoter 86293 87292 0.549751 - . ID=CGI_10010330; scaffold294 GLEAN mRNA 88782 89069 0.602189 - . ID=CGI_10010331; scaffold294 GLEAN promoter 89070 90069 0.602189 - . ID=CGI_10010331; scaffold294 GLEAN mRNA 91307 92905 0.531613 - . ID=CGI_10010332; scaffold294 GLEAN promoter 92336 93335 0.923509 + . ID=CGI_10010333; scaffold294 GLEAN promoter 92906 93905 0.531613 - . ID=CGI_10010332; scaffold294 GLEAN mRNA 93336 100184 0.923509 + . ID=CGI_10010333; scaffold294 TRF Tandem_Repeat 98075 98139 130 + . . scaffold294 TRF Tandem_Repeat 98181 98211 62 + . . scaffold294 TRF Tandem_Repeat 124402 124736 670 + . . scaffold294 GLEAN mRNA 124940 137273 0.889486 - . ID=CGI_10010334; scaffold294 WUBlastX LINE_L2 135695 136594 486 - . . scaffold294 WUBlastX LINE_CR1 136082 136708 56 - . . scaffold294 GLEAN promoter 137274 138273 0.889486 - . ID=CGI_10010334; scaffold294 GLEAN mRNA 142388 147334 0.999091 - . ID=CGI_10010335; scaffold294 GLEAN promoter 147335 148334 0.999091 - . ID=CGI_10010335; scaffold294 GLEAN mRNA 148872 155282 0.999432 - . ID=CGI_10010336; scaffold294 TRF Tandem_Repeat 154532 154713 215 + . . scaffold294 GLEAN promoter 155283 156282 0.999432 - . ID=CGI_10010336; scaffold294 WUBlastX LINE_RTE-X 157227 158051 342 - . . scaffold294 WUBlastX LINE_RTE-X 158074 158229 64 - . . scaffold294 WUBlastX LINE_RTE-X 158189 158287 66 - . . scaffold294 WUBlastX LINE_L2 159070 159117 26 - . . scaffold294 GLEAN mRNA 159563 164366 0.922398 - . ID=CGI_10010337; scaffold294 GLEAN promoter 164367 165366 0.922398 - . ID=CGI_10010337; scaffold294 GLEAN mRNA 165849 166304 0.999999 - . ID=CGI_10010338; scaffold294 GLEAN promoter 166305 167304 0.999999 - . ID=CGI_10010338; scaffold294 TRF Tandem_Repeat 167546 167612 80 + . . scaffold294 GLEAN mRNA 181887 182909 1 - . ID=CGI_10010340; scaffold294 GLEAN promoter 182910 183909 1 - . ID=CGI_10010340; scaffold294 GLEAN mRNA 187267 188844 1 - . ID=CGI_10010341; scaffold294 GLEAN promoter 188845 189844 1 - . ID=CGI_10010341; scaffold294 WUBlastX LINE_L1-Tx1 207691 207789 54 - . . scaffold294 WUBlastX LINE_L1-Tx1 211150 211551 26 - . . scaffold294 WUBlastX LINE_L1-Tx1 211303 211554 59 - . . scaffold294 WUBlastX LINE_L1-Tx1 211550 211627 24 - . . scaffold294 WUBlastX LINE_L1-Tx1 211574 211711 28 - . . scaffold294 WUBlastX LINE_L1-Tx1 223488 223904 126 + . . scaffold294 WUBlastX LINE_L1 224148 224243 25 + . . scaffold294 TRF Tandem_Repeat 225478 225511 68 + . . scaffold294 TRF Tandem_Repeat 229706 229755 91 + . . scaffold294 GLEAN promoter 233001 234000 0.954159 + . ID=CGI_10010342; scaffold294 GLEAN mRNA 234001 260096 0.954159 + . ID=CGI_10010342; scaffold294 GLEAN mRNA 247047 256083 0.954736 - . ID=CGI_10010343; scaffold294 GLEAN promoter 256084 257083 0.954736 - . ID=CGI_10010343; scaffold294 TRF Tandem_Repeat 259152 259638 653 + . . scaffold294 TRF Tandem_Repeat 259152 259638 586 + . . scaffold29468 GLEAN promoter 2297 3296 1 + . ID=CGI_10000536; scaffold29468 GLEAN mRNA 3297 3716 1 + . ID=CGI_10000536; scaffold295 GLEAN mRNA 2449 4670 1 - . ID=CGI_10000440; scaffold295 GLEAN promoter 4671 5626 1 - . ID=CGI_10000440; scaffold29522 GLEAN mRNA 3031 6558 0.999949 - . ID=CGI_10000541; scaffold29522 GLEAN promoter 6559 6721 0.999949 - . ID=CGI_10000541; scaffold29534 GLEAN mRNA 32 6456 1 - . ID=CGI_10000544; scaffold29534 WUBlastX LINE_L1 1208 1834 30 + . . scaffold29534 WUBlastX LINE_RTE-X 1313 2338 253 + . . scaffold29534 WUBlastX LINE_RTE-X 1373 2812 158 + . . scaffold29534 WUBlastX LINE_RTE-X 1373 2545 228 + . . scaffold29534 TRF Tandem_Repeat 3072 3113 57 + . . scaffold29534 GLEAN promoter 6457 6740 1 - . ID=CGI_10000544; scaffold29580 GLEAN mRNA 2635 4902 1 - . ID=CGI_10000542; scaffold29580 GLEAN promoter 4903 5902 1 - . ID=CGI_10000542; scaffold29598 TRF Tandem_Repeat 1160 1191 55 + . . scaffold29598 GLEAN mRNA 1487 5790 0.999943 - . ID=CGI_10000548; scaffold29598 WUBlastX LINE_RTE-X 2770 3006 135 - . . scaffold29598 WUBlastX LINE_RTE-X 3215 3796 412 - . . scaffold29598 WUBlastX LINE_L2 3323 4000 49 - . . scaffold29598 GLEAN promoter 5791 6790 0.999943 - . ID=CGI_10000548; scaffold296 TRF Tandem_Repeat 743 878 93 + . . scaffold296 TRF Tandem_Repeat 749 878 108 + . . scaffold296 TRF Tandem_Repeat 3831 3869 55 + . . scaffold296 WUBlastX LINE_RTE-X 4789 5580 122 + . . scaffold296 WUBlastX LINE_RTE-X 4915 5607 204 + . . scaffold296 WUBlastX LINE_RTE-X 5149 5592 223 + . . scaffold296 WUBlastX DNA_TcMar-Tc1 5573 6043 119 + . . scaffold296 WUBlastX DNA_TcMar-Tc1 6308 6553 80 + . . scaffold296 WUBlastX LINE_L1 6341 6655 29 + . . scaffold296 WUBlastX DNA_TcMar-Tc1 6347 6559 84 + . . scaffold296 WUBlastX LINE_R2 6554 6589 29 + . . scaffold296 TRF Tandem_Repeat 7701 8545 1051 + . . scaffold296 WUBlastX DNA_Maverick 8803 9420 355 - . . scaffold296 GLEAN mRNA 9661 15021 0.923681 - . ID=CGI_10011688; scaffold296 GLEAN promoter 14866 15865 0.74313 + . ID=CGI_10011689; scaffold296 GLEAN promoter 15022 16021 0.923681 - . ID=CGI_10011688; scaffold296 GLEAN mRNA 15866 26579 0.74313 + . ID=CGI_10011689; scaffold296 TRF Tandem_Repeat 16983 17947 1375 + . . scaffold296 WUBlastX DNA_IS4EU 39382 40146 60 + . . scaffold296 GLEAN mRNA 44577 61658 0.928323 - . ID=CGI_10011690; scaffold296 TRF Tandem_Repeat 45132 45330 265 + . . scaffold296 WUBlastX DNA_hAT-Ac 56734 56901 89 - . . scaffold296 WUBlastX DNA_hAT-Ac 56909 57283 48 - . . scaffold296 GLEAN promoter 61659 62658 0.928323 - . ID=CGI_10011690; scaffold296 GLEAN mRNA 70376 80620 0.995336 - . ID=CGI_10011691; scaffold296 GLEAN promoter 80621 81620 0.995336 - . ID=CGI_10011691; scaffold296 GLEAN mRNA 83136 86650 0.999998 - . ID=CGI_10011692; scaffold296 GLEAN promoter 86651 87650 0.999998 - . ID=CGI_10011692; scaffold296 GLEAN promoter 86793 87792 0.999008 + . ID=CGI_10011693; scaffold296 GLEAN mRNA 87793 104250 0.999008 + . ID=CGI_10011693; scaffold296 TRF Tandem_Repeat 91024 91270 234 + . . scaffold296 TRF Tandem_Repeat 92786 92832 94 + . . scaffold296 TRF Tandem_Repeat 96598 96663 87 + . . scaffold296 TRF Tandem_Repeat 99945 99979 70 + . . scaffold296 TRF Tandem_Repeat 100716 100775 84 + . . scaffold296 TRF Tandem_Repeat 100716 100775 102 + . . scaffold296 TRF Tandem_Repeat 101016 101055 80 + . . scaffold296 TRF Tandem_Repeat 108070 108097 56 + . . scaffold296 GLEAN promoter 111796 112795 0.776794 + . ID=CGI_10011694; scaffold296 GLEAN mRNA 112796 113116 0.776794 + . ID=CGI_10011694; scaffold296 WUBlastX LTR_Ngaro 116076 116285 23 + . . scaffold296 GLEAN promoter 116644 117643 0.92222 + . ID=CGI_10011695; scaffold296 WUBlastX LTR_Ngaro 116658 116729 29 + . . scaffold296 WUBlastX LTR_Ngaro 116787 117230 105 + . . scaffold296 GLEAN mRNA 117644 123365 0.92222 + . ID=CGI_10011695; scaffold296 GLEAN promoter 135809 136808 0.592696 + . ID=CGI_10011696; scaffold296 GLEAN mRNA 136809 143453 0.592696 + . ID=CGI_10011696; scaffold296 TRF Tandem_Repeat 145537 145636 182 + . . scaffold296 TRF Tandem_Repeat 150238 150291 99 + . . scaffold296 TRF Tandem_Repeat 152505 152539 61 + . . scaffold296 TRF Tandem_Repeat 154841 154872 50 + . . scaffold296 TRF Tandem_Repeat 159490 159747 101 + . . scaffold296 TRF Tandem_Repeat 159555 159811 159 + . . scaffold296 TRF Tandem_Repeat 162749 162907 264 + . . scaffold296 GLEAN mRNA 175549 176598 1 - . ID=CGI_10011697; scaffold296 GLEAN promoter 176599 177598 1 - . ID=CGI_10011697; scaffold296 GLEAN mRNA 176940 179191 1 - . ID=CGI_10011698; scaffold296 GLEAN promoter 179192 180191 1 - . ID=CGI_10011698; scaffold296 TRF Tandem_Repeat 185762 185812 50 + . . scaffold296 GLEAN mRNA 188021 188314 1 - . ID=CGI_10011699; scaffold296 GLEAN promoter 188315 189314 1 - . ID=CGI_10011699; scaffold296 TRF Tandem_Repeat 200686 200952 444 + . . scaffold296 TRF Tandem_Repeat 205565 205610 92 + . . scaffold296 GLEAN promoter 206466 207465 0.957269 + . ID=CGI_10011700; scaffold296 TRF Tandem_Repeat 207050 207092 86 + . . scaffold296 GLEAN mRNA 207466 207816 0.957269 + . ID=CGI_10011700; scaffold296 TRF Tandem_Repeat 209326 209391 87 + . . scaffold296 TRF Tandem_Repeat 209416 209545 147 + . . scaffold296 TRF Tandem_Repeat 209416 209552 113 + . . scaffold296 WUBlastX LINE_L1-Tx1 212670 213488 94 + . . scaffold296 GLEAN mRNA 234533 247179 0.999949 - . ID=CGI_10011701; scaffold296 WUBlastX LINE_RTE-X 238422 240209 495 - . . scaffold296 WUBlastX LINE_L2 245057 245473 264 + . . scaffold296 GLEAN promoter 247180 248179 0.999949 - . ID=CGI_10011701; scaffold296 TRF Tandem_Repeat 253566 253623 116 + . . scaffold296 TRF Tandem_Repeat 258214 258308 118 + . . scaffold296 GLEAN mRNA 260822 286074 0.283485 - . ID=CGI_10011702; scaffold296 TRF Tandem_Repeat 265272 265310 60 + . . scaffold296 TRF Tandem_Repeat 282029 282067 78 + . . scaffold296 GLEAN promoter 284893 285892 0.999993 + . ID=CGI_10011703; scaffold296 GLEAN mRNA 285893 290309 0.999993 + . ID=CGI_10011703; scaffold296 GLEAN promoter 286075 287074 0.283485 - . ID=CGI_10011702; scaffold29654 GLEAN promoter 87 1086 1 + . ID=CGI_10000553; scaffold29654 GLEAN mRNA 1087 3096 1 + . ID=CGI_10000553; scaffold29728 GLEAN mRNA 4065 6776 0.561405 - . ID=CGI_10000554; scaffold29728 GLEAN promoter 6777 6976 0.561405 - . ID=CGI_10000554; scaffold298 GLEAN promoter 1 51 0.51163 + . ID=CGI_10018814; scaffold298 GLEAN mRNA 52 6233 0.51163 + . ID=CGI_10018814; scaffold298 TRF Tandem_Repeat 3696 3731 72 + . . scaffold298 TRF Tandem_Repeat 6985 7036 56 + . . scaffold298 WUBlastX DNA_Maverick 9117 9602 300 - . . scaffold298 WUBlastX LTR_Gypsy 9602 10393 45 - . . scaffold298 WUBlastX DNA_Maverick 9608 10204 398 - . . scaffold298 GLEAN mRNA 10400 10975 0.999661 - . ID=CGI_10018815; scaffold298 GLEAN promoter 10976 11975 0.999661 - . ID=CGI_10018815; scaffold298 WUBlastX DNA_Maverick 11015 11719 276 - . . scaffold298 WUBlastX DNA_Maverick 11120 11716 395 - . . scaffold298 TRF Tandem_Repeat 11730 12040 155 + . . scaffold298 TRF Tandem_Repeat 11730 12040 482 + . . scaffold298 TRF Tandem_Repeat 11730 12088 343 + . . scaffold298 TRF Tandem_Repeat 11763 12034 323 + . . scaffold298 GLEAN mRNA 12121 16223 1 - . ID=CGI_10018816; scaffold298 WUBlastX DNA_Maverick 12545 15604 2229 - . . scaffold298 WUBlastX DNA_Maverick 13616 16006 1306 - . . scaffold298 GLEAN promoter 16224 17223 1 - . ID=CGI_10018816; scaffold298 WUBlastX LINE_CR1 24099 24173 24 + . . scaffold298 WUBlastX LINE_L1-Tx1 24487 25473 712 + . . scaffold298 WUBlastX LINE_L1-Tx1 35362 36702 165 - . . scaffold298 WUBlastX LINE_L1 36692 36865 54 - . . scaffold298 WUBlastX LINE_L1-Tx1 36692 36835 78 - . . scaffold298 WUBlastX LTR_Gypsy-Cigr 37487 38470 661 - . . scaffold298 WUBlastX LTR_Gypsy 37517 39202 546 - . . scaffold298 WUBlastX LTR_Gypsy 38870 39265 279 - . . scaffold298 WUBlastX LTR_Gypsy 38870 39880 178 - . . scaffold298 WUBlastX LTR_Gypsy 39440 39880 295 - . . scaffold298 WUBlastX LTR_Gypsy-Cigr 39847 40101 113 - . . scaffold298 WUBlastX LTR_Gypsy 39945 40205 136 - . . scaffold298 WUBlastX LTR_Gypsy 40206 40676 56 - . . scaffold298 WUBlastX LTR_Gypsy 40206 40565 103 - . . scaffold298 WUBlastX LTR_Gypsy-Cigr 40206 40439 121 - . . scaffold298 WUBlastX LTR_Gypsy 40453 40587 82 - . . scaffold298 TRF Tandem_Repeat 50238 50264 54 + . . scaffold298 TRF Tandem_Repeat 53339 53395 114 + . . scaffold298 GLEAN promoter 55636 56635 0.66079 + . ID=CGI_10018818; scaffold298 GLEAN mRNA 56636 68845 0.66079 + . ID=CGI_10018818; scaffold298 TRF Tandem_Repeat 67445 67584 135 + . . scaffold298 GLEAN mRNA 70628 73186 1 - . ID=CGI_10018819; scaffold298 GLEAN promoter 73187 74186 1 - . ID=CGI_10018819; scaffold298 GLEAN mRNA 73726 87919 0.809704 - . ID=CGI_10018820; scaffold298 TRF Tandem_Repeat 75520 75579 120 + . . scaffold298 TRF Tandem_Repeat 76640 76722 166 + . . scaffold298 TRF Tandem_Repeat 79287 79973 990 + . . scaffold298 TRF Tandem_Repeat 80247 80321 141 + . . scaffold298 GLEAN promoter 87920 88919 0.809704 - . ID=CGI_10018820; scaffold298 TRF Tandem_Repeat 88062 88087 52 + . . scaffold298 TRF Tandem_Repeat 96140 96929 824 + . . scaffold298 TRF Tandem_Repeat 115271 116429 1068 + . . scaffold298 GLEAN promoter 127795 128794 0.99543 + . ID=CGI_10018821; scaffold298 GLEAN mRNA 128795 156084 0.99543 + . ID=CGI_10018821; scaffold298 TRF Tandem_Repeat 137646 137689 88 + . . scaffold298 TRF Tandem_Repeat 140385 140635 202 + . . scaffold298 TRF Tandem_Repeat 140456 140558 87 + . . scaffold298 TRF Tandem_Repeat 140536 140717 123 + . . scaffold298 GLEAN mRNA 145422 151612 0.999927 - . ID=CGI_10018822; scaffold298 GLEAN promoter 151613 152612 0.999927 - . ID=CGI_10018822; scaffold298 TRF Tandem_Repeat 159349 159378 60 + . . scaffold298 WUBlastX DNA_hAT-Tip100 163502 164290 221 - . . scaffold298 WUBlastX DNA_hAT-Tip100 163568 164227 222 - . . scaffold298 WUBlastX DNA_hAT-Tip100 164655 165056 216 - . . scaffold298 WUBlastX DNA_hAT-Tip100 165070 165474 168 - . . scaffold298 WUBlastX DNA_hAT-Tip100 165097 165546 64 - . . scaffold298 TRF Tandem_Repeat 171542 172903 2419 + . . scaffold298 WUBlastX LINE_RTE-X 177432 177695 95 - . . scaffold298 TRF Tandem_Repeat 179363 179407 90 + . . scaffold298 TRF Tandem_Repeat 191944 192005 115 + . . scaffold298 WUBlastX DNA_IS4EU 197803 198150 35 + . . scaffold298 WUBlastX DNA_IS4EU 198835 199236 46 + . . scaffold298 TRF Tandem_Repeat 201987 202014 56 + . . scaffold298 WUBlastX LTR_DIRS 207255 207770 113 - . . scaffold298 WUBlastX LTR_DIRS 207264 207587 152 - . . scaffold298 WUBlastX LTR_DIRS 207264 207686 118 - . . scaffold298 WUBlastX LTR_DIRS 211478 212059 57 - . . scaffold298 TRF Tandem_Repeat 215551 215595 90 + . . scaffold298 WUBlastX DNA_Crypton 216515 216865 60 - . . scaffold298 TRF Tandem_Repeat 218546 218624 158 + . . scaffold298 TRF Tandem_Repeat 241709 241779 142 + . . scaffold298 TRF Tandem_Repeat 250691 251876 1385 + . . scaffold298 WUBlastX LTR_Gypsy 258562 258636 21 - . . scaffold298 WUBlastX LTR_Gypsy 258636 259130 197 - . . scaffold298 WUBlastX LTR_Gypsy 259130 259249 64 - . . scaffold298 WUBlastX LINE_RTE-X 268989 269192 96 + . . scaffold298 WUBlastX LINE_I 269034 269225 102 + . . scaffold298 WUBlastX LINE_RTE-X 269034 269192 114 + . . scaffold298 WUBlastX LINE_L1 269225 269764 99 + . . scaffold298 WUBlastX LINE_L1-Tx1 269955 270050 23 + . . scaffold298 WUBlastX LINE_L1-Tx1 269982 270050 31 + . . scaffold298 WUBlastX LINE_L1 270008 270226 65 + . . scaffold298 WUBlastX LINE_L1-Tx1 270053 270754 106 + . . scaffold298 WUBlastX LINE_L1 270053 270625 135 + . . scaffold298 WUBlastX LINE_L1-Tx1 270772 270897 37 + . . scaffold298 WUBlastX LINE_L1-Tx1 270805 270900 59 + . . scaffold298 WUBlastX LINE_RTE-X 272784 273164 93 + . . scaffold298 WUBlastX LINE_RTE-X 272931 273212 51 + . . scaffold298 GLEAN mRNA 275559 284249 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 277708 278682 169 - . . scaffold298 WUBlastX LTR_Gypsy 277879 278697 433 - . . scaffold298 TRF Tandem_Repeat 279781 279837 114 + . . scaffold298 WUBlastX LTR_Gypsy 281042 281422 33 - . . scaffold298 WUBlastX LTR_Gypsy 281144 281383 80 - . . scaffold298 WUBlastX LTR_Gypsy 281290 281688 109 - . . scaffold298 WUBlastX LTR_Gypsy 281365 281703 147 - . . scaffold298 WUBlastX LTR_Gypsy-Cigr 281371 281655 151 - . . scaffold298 TRF Tandem_Repeat 281889 281989 202 + . . scaffold298 GLEAN promoter 284250 285249 0.999682 - . ID=CGI_10018823; scaffold298 WUBlastX LTR_Gypsy 285035 285268 98 - . . scaffold298 WUBlastX LTR_Gypsy 285056 285328 47 - . . scaffold298 TRF Tandem_Repeat 289360 289419 120 + . . scaffold298 TRF Tandem_Repeat 289660 289706 60 + . . scaffold298 GLEAN mRNA 297759 312412 0.999402 - . ID=CGI_10018824; scaffold298 TRF Tandem_Repeat 298574 298617 88 + . . scaffold298 WUBlastX LTR_Ngaro 299028 299453 79 + . . scaffold298 WUBlastX LTR_Ngaro 299124 299459 92 + . . scaffold298 WUBlastX LTR_Ngaro 299175 299453 123 + . . scaffold298 TRF Tandem_Repeat 307965 308012 96 + . . scaffold298 GLEAN promoter 312413 313412 0.999402 - . ID=CGI_10018824; scaffold298 WUBlastX LTR_Gypsy-Cigr 312423 313022 91 + . . scaffold298 WUBlastX LTR_Gypsy 312471 312911 115 + . . scaffold298 WUBlastX LTR_Gypsy 313375 313431 20 + . . scaffold298 WUBlastX LTR_Gypsy 313381 313461 20 + . . scaffold298 WUBlastX LTR_Gypsy 313460 313585 20 + . . scaffold298 WUBlastX LTR_Gypsy 313487 313642 50 + . . scaffold298 WUBlastX LTR_Gypsy 313537 313764 63 + . . scaffold298 WUBlastX LTR_ERVL 313717 313830 20 + . . scaffold298 WUBlastX LTR_Gypsy 313803 314090 35 + . . scaffold298 WUBlastX LTR_Gypsy 313959 314123 23 + . . scaffold298 WUBlastX LTR_Gypsy 314141 315679 505 + . . scaffold298 WUBlastX LTR_Gypsy 314390 315940 702 + . . scaffold298 WUBlastX LTR_Gypsy 315815 315964 23 + . . scaffold298 WUBlastX LTR_Gypsy 316005 316394 40 + . . scaffold298 WUBlastX LTR_Gypsy 316137 316325 83 + . . scaffold298 WUBlastX LTR_ERV1 316243 316677 109 + . . scaffold298 WUBlastX LTR_Gypsy 316309 317133 328 + . . scaffold298 TRF Tandem_Repeat 319386 319424 78 + . . scaffold298 TRF Tandem_Repeat 329932 329971 73 + . . scaffold298 GLEAN promoter 341308 342307 0.999999 + . ID=CGI_10018825; scaffold298 TRF Tandem_Repeat 341492 341550 118 + . . scaffold298 GLEAN mRNA 342308 344944 0.999999 + . ID=CGI_10018825; scaffold298 GLEAN mRNA 346282 362895 0.999999 - . ID=CGI_10018826; scaffold298 GLEAN promoter 352784 353783 1 + . ID=CGI_10018827; scaffold298 GLEAN mRNA 353784 360529 1 + . ID=CGI_10018827; scaffold298 GLEAN promoter 362896 363895 0.999999 - . ID=CGI_10018826; scaffold298 GLEAN mRNA 365743 373750 0.650954 - . ID=CGI_10018828; scaffold298 TRF Tandem_Repeat 370071 370105 70 + . . scaffold298 GLEAN promoter 373751 374750 0.650954 - . ID=CGI_10018828; scaffold298 TRF Tandem_Repeat 377163 377214 50 + . . scaffold298 GLEAN promoter 379395 380394 0.544675 + . ID=CGI_10018829; scaffold298 GLEAN mRNA 380395 387731 0.544675 + . ID=CGI_10018829; scaffold298 WUBlastX LINE_Penelope 387929 388351 140 - . . scaffold298 WUBlastX LINE_Penelope 388028 388423 49 - . . scaffold298 TRF Tandem_Repeat 390325 390375 102 + . . scaffold298 WUBlastX LTR_Ngaro 400598 400858 40 - . . scaffold298 WUBlastX LTR_Ngaro 400881 401195 52 - . . scaffold298 WUBlastX LTR_Ngaro 401176 402057 503 - . . scaffold298 WUBlastX LTR_Ngaro 402054 402407 128 - . . scaffold298 WUBlastX LTR_Ngaro 402291 402530 81 - . . scaffold298 WUBlastX LTR_Ngaro 402756 403205 131 - . . scaffold298 TRF Tandem_Repeat 404429 404465 74 + . . scaffold298 WUBlastX LTR_DIRS 404946 405464 177 - . . scaffold298 WUBlastX LTR_DIRS 406495 407217 189 - . . scaffold298 WUBlastX LTR_DIRS 406573 407064 315 - . . scaffold298 GLEAN promoter 407801 408800 0.763549 + . ID=CGI_10018830; scaffold298 GLEAN mRNA 408801 417115 0.763549 + . ID=CGI_10018830; scaffold298 GLEAN mRNA 426924 440921 0.38247 - . ID=CGI_10018831; scaffold298 TRF Tandem_Repeat 438059 439130 1545 + . . scaffold298 GLEAN promoter 440922 441921 0.38247 - . ID=CGI_10018831; scaffold298 TRF Tandem_Repeat 445440 445642 227 + . . scaffold298 GLEAN promoter 450450 451449 0.901953 + . ID=CGI_10018832; scaffold298 GLEAN mRNA 451450 453005 0.901953 + . ID=CGI_10018832; scaffold298 WUBlastX DNA_IS4EU 451468 451968 34 + . . scaffold298 WUBlastX DNA_IS4EU 452298 452423 24 + . . scaffold298 TRF Tandem_Repeat 456772 456818 94 + . . scaffold298 GLEAN mRNA 459042 461079 1 - . ID=CGI_10018833; scaffold298 GLEAN promoter 461080 462079 1 - . ID=CGI_10018833; scaffold298 WUBlastX LINE_L2 465822 466214 233 - . . scaffold298 WUBlastX LINE_CR1-L2 465861 466325 194 - . . scaffold298 GLEAN promoter 468790 469789 1 + . ID=CGI_10018834; scaffold298 GLEAN mRNA 469790 476828 1 + . ID=CGI_10018834; scaffold298 GLEAN mRNA 476861 483923 0.879445 - . ID=CGI_10018835; scaffold298 TRF Tandem_Repeat 477248 477276 58 + . . scaffold298 TRF Tandem_Repeat 477276 477320 90 + . . scaffold298 TRF Tandem_Repeat 483492 483566 141 + . . scaffold298 GLEAN promoter 483924 484923 0.879445 - . ID=CGI_10018835; scaffold298 TRF Tandem_Repeat 498486 498531 92 + . . scaffold298 TRF Tandem_Repeat 498913 498962 75 + . . scaffold298 GLEAN promoter 500146 501145 0.635848 + . ID=CGI_10018836; scaffold298 GLEAN mRNA 501146 527362 0.635848 + . ID=CGI_10018836; scaffold298 TRF Tandem_Repeat 506243 506284 84 + . . scaffold298 WUBlastX LINE_L2 518895 519536 108 + . . scaffold298 WUBlastX LINE_L2 519156 519536 170 + . . scaffold298 TRF Tandem_Repeat 528228 528364 204 + . . scaffold298 GLEAN promoter 532572 533571 0.588026 + . ID=CGI_10018837; scaffold298 GLEAN mRNA 533572 536300 0.588026 + . ID=CGI_10018837; scaffold298 TRF Tandem_Repeat 533899 533974 73 + . . scaffold298 GLEAN mRNA 541430 553148 0.980195 - . ID=CGI_10018838; scaffold298 TRF Tandem_Repeat 544151 544260 220 + . . scaffold298 TRF Tandem_Repeat 546958 547000 86 + . . scaffold298 TRF Tandem_Repeat 550045 550132 74 + . . scaffold298 GLEAN promoter 553149 554148 0.980195 - . ID=CGI_10018838; scaffold298 GLEAN mRNA 553200 564459 0.549052 - . ID=CGI_10018839; scaffold298 TRF Tandem_Repeat 555266 555429 238 + . . scaffold298 TRF Tandem_Repeat 555726 555754 58 + . . scaffold298 TRF Tandem_Repeat 561501 561542 59 + . . scaffold298 GLEAN promoter 564460 565459 0.549052 - . ID=CGI_10018839; scaffold298 GLEAN promoter 567917 568916 1 + . ID=CGI_10018840; scaffold298 GLEAN mRNA 568917 570919 1 + . ID=CGI_10018840; scaffold298 TRF Tandem_Repeat 571632 571657 52 + . . scaffold29802 GLEAN promoter 4660 5659 0.999185 + . ID=CGI_10000562; scaffold29802 GLEAN mRNA 5660 6802 0.999185 + . ID=CGI_10000562; scaffold29806 GLEAN promoter 1767 2766 0.999943 + . ID=CGI_10000558; scaffold29806 GLEAN mRNA 2767 5524 0.999943 + . ID=CGI_10000558; scaffold29818 GLEAN promoter 689 1688 0.999973 + . ID=CGI_10000563; scaffold29818 GLEAN mRNA 1689 5056 0.999973 + . ID=CGI_10000563; scaffold29846 WUBlastX LINE_L1 535 801 35 + . . scaffold29846 WUBlastX LINE_L1-Tx1 595 1089 85 + . . scaffold29846 GLEAN promoter 3372 4371 0.557603 + . ID=CGI_10000572; scaffold29846 WUBlastX LINE_RTE-X 3765 3863 36 + . . scaffold29846 GLEAN mRNA 4372 5040 0.557603 + . ID=CGI_10000572; scaffold29856 GLEAN mRNA 4566 5683 0.702157 - . ID=CGI_10000575; scaffold29856 GLEAN promoter 5684 6683 0.702157 - . ID=CGI_10000575; scaffold29874 GLEAN mRNA 396 4863 1 - . ID=CGI_10000571; scaffold29874 GLEAN promoter 4864 5863 1 - . ID=CGI_10000571; scaffold299 GLEAN mRNA 18745 23041 1 - . ID=CGI_10003342; scaffold299 GLEAN promoter 23042 24041 1 - . ID=CGI_10003342; scaffold299 GLEAN mRNA 64900 67483 0.999676 - . ID=CGI_10003343; scaffold299 GLEAN promoter 67484 68483 0.999676 - . ID=CGI_10003343; scaffold29912 TRF Tandem_Repeat 752 827 82 + . . scaffold29912 WUBlastX LTR_Pao 5949 7142 1147 - . . scaffold3 WUBlastX DNA_Harbinger 970 1422 75 + . . scaffold3 WUBlastX DNA_Harbinger 1171 1398 113 + . . scaffold3 WUBlastX DNA_Harbinger 1439 1783 126 + . . scaffold3 WUBlastX DNA_Kolobok-IS4 24140 24610 160 + . . scaffold3 TRF Tandem_Repeat 29738 29802 94 + . . scaffold3 GLEAN mRNA 34173 61876 0.984416 - . ID=CGI_10027268; scaffold3 TRF Tandem_Repeat 34362 34427 64 + . . scaffold3 TRF Tandem_Repeat 34362 34427 53 + . . scaffold3 TRF Tandem_Repeat 38305 38371 89 + . . scaffold3 GLEAN promoter 46892 47891 0.999676 + . ID=CGI_10027269; scaffold3 GLEAN mRNA 47892 52805 0.999676 + . ID=CGI_10027269; scaffold3 WUBlastX LINE_RTE-X 50715 51032 32 + . . scaffold3 WUBlastX LINE_RTE-X 50769 51032 71 + . . scaffold3 WUBlastX LINE_RTE-X 50817 51062 81 + . . scaffold3 TRF Tandem_Repeat 56926 56968 59 + . . scaffold3 TRF Tandem_Repeat 56926 56974 73 + . . scaffold3 TRF Tandem_Repeat 60044 60107 76 + . . scaffold3 GLEAN promoter 61877 62876 0.984416 - . ID=CGI_10027268; scaffold3 GLEAN mRNA 62536 64856 0.99999 - . ID=CGI_10027270; scaffold3 GLEAN promoter 64857 65856 0.99999 - . ID=CGI_10027270; scaffold3 GLEAN mRNA 65420 69507 1 - . ID=CGI_10027271; scaffold3 TRF Tandem_Repeat 66365 66445 74 + . . scaffold3 GLEAN promoter 69508 70507 1 - . ID=CGI_10027271; scaffold3 GLEAN mRNA 72059 76364 1 - . ID=CGI_10027272; scaffold3 GLEAN promoter 76365 77364 1 - . ID=CGI_10027272; scaffold3 TRF Tandem_Repeat 78833 78931 164 + . . scaffold3 TRF Tandem_Repeat 78973 79073 103 + . . scaffold3 TRF Tandem_Repeat 79687 79784 70 + . . scaffold3 GLEAN mRNA 82419 111292 0.739728 - . ID=CGI_10027273; scaffold3 WUBlastX LINE_L2 110440 110940 347 + . . scaffold3 GLEAN promoter 111293 112292 0.739728 - . ID=CGI_10027273; scaffold3 GLEAN mRNA 112896 113342 1 - . ID=CGI_10027274; scaffold3 GLEAN promoter 113343 114342 1 - . ID=CGI_10027274; scaffold3 GLEAN mRNA 113692 115029 1 - . ID=CGI_10027275; scaffold3 GLEAN promoter 114118 115117 0.999993 + . ID=CGI_10027276; scaffold3 GLEAN promoter 115030 116029 1 - . ID=CGI_10027275; scaffold3 GLEAN mRNA 115118 120562 0.999993 + . ID=CGI_10027276; scaffold3 WUBlastX LINE_L1-Tx1 116932 117657 64 + . . scaffold3 WUBlastX LINE_L1 116935 117486 77 + . . scaffold3 GLEAN mRNA 122298 129089 1 - . ID=CGI_10027277; scaffold3 GLEAN promoter 124090 125089 1 + . ID=CGI_10027278; scaffold3 GLEAN mRNA 125090 129396 1 + . ID=CGI_10027278; scaffold3 GLEAN promoter 129090 130089 1 - . ID=CGI_10027277; scaffold3 GLEAN mRNA 132865 136053 0.999661 - . ID=CGI_10027279; scaffold3 GLEAN promoter 136054 137053 0.999661 - . ID=CGI_10027279; scaffold3 WUBlastX LINE_CR1-L2 136600 136680 24 + . . scaffold3 WUBlastX LINE_L1 136820 136903 20 + . . scaffold3 WUBlastX LINE_CR1 137259 137645 38 + . . scaffold3 WUBlastX LINE_RTE-X 137636 139342 552 + . . scaffold3 TRF Tandem_Repeat 139365 139390 52 + . . scaffold3 GLEAN promoter 139543 140542 0.72249 + . ID=CGI_10027280; scaffold3 GLEAN mRNA 140543 146890 0.72249 + . ID=CGI_10027280; scaffold3 TRF Tandem_Repeat 142582 142778 148 + . . scaffold3 WUBlastX LINE_RTE-X 143391 143678 31 - . . scaffold3 WUBlastX LINE_RTE-X 143472 143678 40 - . . scaffold3 WUBlastX LINE_RTE-X 143520 143714 46 - . . scaffold3 TRF Tandem_Repeat 151077 151102 52 + . . scaffold3 TRF Tandem_Repeat 151602 151688 86 + . . scaffold3 TRF Tandem_Repeat 151614 151701 54 + . . scaffold3 GLEAN mRNA 156747 206897 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 168049 168080 57 + . . scaffold3 TRF Tandem_Repeat 168106 168158 97 + . . scaffold3 TRF Tandem_Repeat 188565 188590 52 + . . scaffold3 TRF Tandem_Repeat 191721 191754 68 + . . scaffold3 TRF Tandem_Repeat 191986 192022 74 + . . scaffold3 TRF Tandem_Repeat 193710 193771 110 + . . scaffold3 TRF Tandem_Repeat 197002 197079 126 + . . scaffold3 TRF Tandem_Repeat 197198 197231 59 + . . scaffold3 TRF Tandem_Repeat 206573 206706 150 + . . scaffold3 GLEAN promoter 206898 207897 0.866353 - . ID=CGI_10027281; scaffold3 TRF Tandem_Repeat 207516 207545 60 + . . scaffold3 TRF Tandem_Repeat 215822 215921 103 + . . scaffold3 GLEAN mRNA 219311 230407 0.99778 - . ID=CGI_10027282; scaffold3 GLEAN promoter 230408 231407 0.99778 - . ID=CGI_10027282; scaffold3 GLEAN mRNA 234861 246981 0.996322 - . ID=CGI_10027283; scaffold3 TRF Tandem_Repeat 242227 242268 75 + . . scaffold3 GLEAN promoter 246982 247981 0.996322 - . ID=CGI_10027283; scaffold3 GLEAN promoter 248091 249090 1 + . ID=CGI_10027284; scaffold3 GLEAN mRNA 249091 252056 1 + . ID=CGI_10027284; scaffold3 GLEAN mRNA 253242 258461 1 - . ID=CGI_10027285; scaffold3 GLEAN promoter 257903 258902 0.999999 + . ID=CGI_10027286; scaffold3 GLEAN promoter 258462 259461 1 - . ID=CGI_10027285; scaffold3 GLEAN mRNA 258903 262251 0.999999 + . ID=CGI_10027286; scaffold3 TRF Tandem_Repeat 260713 260781 129 + . . scaffold3 GLEAN promoter 262381 263380 1 + . ID=CGI_10027287; scaffold3 GLEAN mRNA 263381 264194 1 + . ID=CGI_10027287; scaffold3 GLEAN promoter 265781 266780 1 + . ID=CGI_10027288; scaffold3 GLEAN mRNA 266781 268787 1 + . ID=CGI_10027288; scaffold3 WUBlastX LINE_Penelope 281119 282030 492 - . . scaffold3 WUBlastX LINE_Penelope 282035 282775 407 - . . scaffold3 WUBlastX LINE_Penelope 282035 283072 401 - . . scaffold3 WUBlastX LTR_Ngaro 285382 285657 25 + . . scaffold3 WUBlastX LTR_Ngaro 285520 285609 54 + . . scaffold3 WUBlastX LTR_Ngaro 285675 285848 91 + . . scaffold3 WUBlastX LTR_Ngaro 285940 286101 53 + . . scaffold3 WUBlastX LTR_Ngaro 285940 286059 61 + . . scaffold3 GLEAN mRNA 287358 293038 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Kolobok-Hyd 289365 289541 52 - . . scaffold3 WUBlastX DNA_Kolobok-Hyd 289380 289703 33 - . . scaffold3 WUBlastX DNA_Kolobok 289401 289895 23 - . . scaffold3 WUBlastX DNA_Kolobok-Hyd 289961 290182 38 - . . scaffold3 WUBlastX DNA_Kolobok-Hyd 290346 290435 20 - . . scaffold3 WUBlastX DNA_Kolobok-Hyd 290385 290438 25 - . . scaffold3 GLEAN promoter 293039 294038 0.456262 - . ID=CGI_10027289; scaffold3 WUBlastX DNA_Harbinger 295118 295327 116 - . . scaffold3 WUBlastX LTR_Gypsy-Cigr 295896 296291 114 + . . scaffold3 WUBlastX LTR_Gypsy 296001 296291 130 + . . scaffold3 WUBlastX LTR_Gypsy-Cigr 296294 296779 77 + . . scaffold3 WUBlastX LTR_Gypsy-Cigr 296806 298551 919 + . . scaffold3 WUBlastX LTR_Gypsy 298479 299078 421 + . . scaffold3 WUBlastX LTR_Gypsy-Cigr 299087 300094 620 + . . scaffold3 WUBlastX LTR_Gypsy-Cigr 300096 300485 166 + . . scaffold3 WUBlastX LTR_Gypsy 300096 300581 22 + . . scaffold3 TRF Tandem_Repeat 301341 301372 64 + . . scaffold3 WUBlastX LINE_L1-Tx1 302008 302310 58 + . . scaffold3 TRF Tandem_Repeat 322371 322422 104 + . . scaffold3 TRF Tandem_Repeat 322609 322637 58 + . . scaffold3 TRF Tandem_Repeat 322635 322672 76 + . . scaffold3 TRF Tandem_Repeat 323184 323225 57 + . . scaffold3 WUBlastX LINE_L1-Tx1 324807 324851 26 - . . scaffold3 WUBlastX LINE_L1-Tx1 324871 325002 45 - . . scaffold3 WUBlastX LINE_L1-Tx1 325157 325372 26 - . . scaffold3 GLEAN mRNA 325604 331326 0.983702 - . ID=CGI_10027290; scaffold3 TRF Tandem_Repeat 326595 326671 127 + . . scaffold3 GLEAN promoter 331327 332326 0.983702 - . ID=CGI_10027290; scaffold3 TRF Tandem_Repeat 339578 340385 856 + . . scaffold3 TRF Tandem_Repeat 345202 345249 96 + . . scaffold3 WUBlastX LINE_RTE-X 354257 354418 34 + . . scaffold3 WUBlastX LINE_RTE-X 354840 354971 20 + . . scaffold3 TRF Tandem_Repeat 355389 355438 91 + . . scaffold3 TRF Tandem_Repeat 356558 356595 76 + . . scaffold3 TRF Tandem_Repeat 361363 362163 1270 + . . scaffold3 TRF Tandem_Repeat 362333 362386 54 + . . scaffold3 GLEAN mRNA 362573 374344 0.984893 - . ID=CGI_10027291; scaffold3 TRF Tandem_Repeat 368083 368128 92 + . . scaffold3 WUBlastX LINE_L1-Tx1 369630 370046 50 - . . scaffold3 WUBlastX LINE_L1-Tx1 369660 369944 78 - . . scaffold3 GLEAN promoter 374345 375344 0.984893 - . ID=CGI_10027291; scaffold3 GLEAN promoter 394445 395444 0.60379 + . ID=CGI_10027292; scaffold3 GLEAN mRNA 395445 425378 0.60379 + . ID=CGI_10027292; scaffold3 TRF Tandem_Repeat 422575 423260 984 + . . scaffold3 TRF Tandem_Repeat 433962 434010 98 + . . scaffold3 TRF Tandem_Repeat 443327 443390 53 + . . scaffold3 TRF Tandem_Repeat 443472 443526 74 + . . scaffold3 TRF Tandem_Repeat 444040 444065 52 + . . scaffold3 TRF Tandem_Repeat 444162 444190 51 + . . scaffold3 TRF Tandem_Repeat 455317 456316 1161 + . . scaffold3 WUBlastX LTR_DIRS 456616 457032 230 - . . scaffold3 WUBlastX LTR_DIRS 457037 457459 252 - . . scaffold3 WUBlastX LTR_DIRS 457037 457615 231 - . . scaffold3 TRF Tandem_Repeat 459817 459856 80 + . . scaffold3 WUBlastX LTR_DIRS 461426 462406 274 - . . scaffold3 WUBlastX LTR_DIRS 461429 462037 338 - . . scaffold3 WUBlastX LTR_DIRS 462412 462567 41 - . . scaffold3 WUBlastX LTR_DIRS 462436 462750 289 - . . scaffold3 WUBlastX LTR_Gypsy 462442 462966 92 - . . scaffold3 WUBlastX LTR_DIRS 462445 462861 198 - . . scaffold3 WUBlastX LTR_DIRS 462751 463755 25 - . . scaffold3 TRF Tandem_Repeat 464062 464096 52 + . . scaffold3 WUBlastX LTR_Gypsy 476581 476736 29 - . . scaffold3 WUBlastX LTR_Gypsy 476686 476739 37 - . . scaffold3 WUBlastX LTR_Gypsy 476696 477151 379 - . . scaffold3 WUBlastX LTR_Gypsy 476759 477241 89 - . . scaffold3 GLEAN mRNA 479350 493776 0.981193 - . ID=CGI_10027293; scaffold3 TRF Tandem_Repeat 490964 491031 122 + . . scaffold3 TRF Tandem_Repeat 491997 492049 88 + . . scaffold3 GLEAN promoter 493777 494776 0.981193 - . ID=CGI_10027293; scaffold3 TRF Tandem_Repeat 496780 496825 92 + . . scaffold3 TRF Tandem_Repeat 497793 497846 90 + . . scaffold3 TRF Tandem_Repeat 504157 504196 80 + . . scaffold3 TRF Tandem_Repeat 513231 513285 74 + . . scaffold3 WUBlastX LTR_Gypsy 515476 516498 60 + . . scaffold3 WUBlastX LTR_Gypsy 515695 516492 373 + . . scaffold3 WUBlastX LTR_Gypsy 515809 516636 93 + . . scaffold3 WUBlastX LTR_Gypsy 516668 516844 21 + . . scaffold3 WUBlastX LTR_Gypsy 516746 516802 21 + . . scaffold3 WUBlastX LTR_Gypsy 516783 517523 289 + . . scaffold3 WUBlastX LTR_Gypsy 517426 518079 450 + . . scaffold3 TRF Tandem_Repeat 518119 518174 62 + . . scaffold3 TRF Tandem_Repeat 518123 518177 56 + . . scaffold3 WUBlastX LTR_Gypsy 518768 518809 22 + . . scaffold3 WUBlastX LTR_Gypsy 518853 518981 20 + . . scaffold3 WUBlastX LTR_Gypsy 519322 519633 297 + . . scaffold3 WUBlastX LTR_Gypsy 519642 520283 488 + . . scaffold3 WUBlastX LTR_Gypsy 519660 520415 70 + . . scaffold3 GLEAN promoter 520350 521349 0.999999 + . ID=CGI_10027294; scaffold3 WUBlastX LTR_Gypsy 520909 521430 67 + . . scaffold3 GLEAN mRNA 521350 521580 0.999999 + . ID=CGI_10027294; scaffold3 TRF Tandem_Repeat 522922 522954 66 + . . scaffold3 TRF Tandem_Repeat 525790 525926 204 + . . scaffold3 WUBlastX LTR_Ngaro 554221 554499 207 - . . scaffold3 WUBlastX LTR_Ngaro 554221 554604 164 - . . scaffold3 WUBlastX LTR_Ngaro 554630 555004 84 - . . scaffold3 WUBlastX LTR_Ngaro 554774 554995 100 - . . scaffold3 WUBlastX LTR_Ngaro 555049 555168 31 - . . scaffold3 WUBlastX LTR_Ngaro 555085 555171 36 - . . scaffold3 TRF Tandem_Repeat 560279 560321 79 + . . scaffold3 GLEAN promoter 612210 613209 0.148545 + . ID=CGI_10027295; scaffold3 GLEAN mRNA 613210 632275 0.148545 + . ID=CGI_10027295; scaffold3 TRF Tandem_Repeat 633709 633773 85 + . . scaffold3 TRF Tandem_Repeat 636912 636941 51 + . . scaffold3 TRF Tandem_Repeat 637000 637038 78 + . . scaffold3 WUBlastX LINE_L1-Tx1 652921 654924 725 - . . scaffold3 WUBlastX LINE_L1 655206 655274 20 - . . scaffold3 WUBlastX LINE_L2 655221 655322 24 - . . scaffold3 GLEAN promoter 665595 666594 1 + . ID=CGI_10027296; scaffold3 GLEAN mRNA 666595 677011 1 + . ID=CGI_10027296; scaffold3 WUBlastX LINE_CR1-L2 670070 670255 109 + . . scaffold3 WUBlastX LINE_L2 670070 670291 64 + . . scaffold3 WUBlastX LINE_CR1-L2 670243 670773 30 + . . scaffold3 WUBlastX LINE_CR1-L2 670386 670511 40 + . . scaffold3 WUBlastX LINE_CR1-L2 670386 670589 35 + . . scaffold3 WUBlastX LINE_RTE-X 670597 670857 33 + . . scaffold3 GLEAN mRNA 685378 693097 1 - . ID=CGI_10027297; scaffold3 TRF Tandem_Repeat 687521 687553 66 + . . scaffold3 TRF Tandem_Repeat 692643 692674 64 + . . scaffold3 GLEAN promoter 693098 694097 1 - . ID=CGI_10027297; scaffold3 TRF Tandem_Repeat 694948 694999 104 + . . scaffold3 GLEAN promoter 694972 695971 0.716963 + . ID=CGI_10027298; scaffold3 GLEAN mRNA 695972 734494 0.716963 + . ID=CGI_10027298; scaffold3 TRF Tandem_Repeat 697113 697926 1161 + . . scaffold3 GLEAN mRNA 737671 744846 0.975828 - . ID=CGI_10027299; scaffold3 TRF Tandem_Repeat 740874 740898 50 + . . scaffold3 TRF Tandem_Repeat 742359 742432 139 + . . scaffold3 GLEAN promoter 744847 745846 0.975828 - . ID=CGI_10027299; scaffold3 TRF Tandem_Repeat 745655 745700 92 + . . scaffold3 GLEAN mRNA 755040 757404 1 - . ID=CGI_10027300; scaffold3 GLEAN promoter 757405 758404 1 - . ID=CGI_10027300; scaffold3 TRF Tandem_Repeat 758853 760372 1896 + . . scaffold3 TRF Tandem_Repeat 758853 760372 1948 + . . scaffold3 TRF Tandem_Repeat 762227 762298 71 + . . scaffold3 TRF Tandem_Repeat 762227 762299 69 + . . scaffold3 TRF Tandem_Repeat 764286 765363 1142 + . . scaffold3 TRF Tandem_Repeat 767780 767817 67 + . . scaffold3 GLEAN promoter 768221 769220 0.593391 + . ID=CGI_10027301; scaffold3 GLEAN mRNA 769221 771558 0.593391 + . ID=CGI_10027301; scaffold3 WUBlastX DNA_Kolobok 784120 784365 98 + . . scaffold3 GLEAN promoter 785230 786229 0.588946 + . ID=CGI_10027302; scaffold3 GLEAN mRNA 786230 790722 0.588946 + . ID=CGI_10027302; scaffold3 WUBlastX LTR_Pao 790174 790614 53 + . . scaffold3 WUBlastX LTR_Pao 792282 793115 658 + . . scaffold3 WUBlastX LTR_Pao 793118 793378 149 + . . scaffold3 WUBlastX LTR_Pao 793159 793914 261 + . . scaffold3 WUBlastX LTR_Pao 793381 794019 203 + . . scaffold3 WUBlastX LTR_Pao 793387 793914 454 + . . scaffold3 GLEAN mRNA 799979 802593 1 - . ID=CGI_10027303; scaffold3 GLEAN promoter 802594 803593 1 - . ID=CGI_10027303; scaffold3 WUBlastX LTR_Pao 803577 804656 1045 - . . scaffold3 GLEAN promoter 804376 805375 0.747251 + . ID=CGI_10027304; scaffold3 GLEAN mRNA 805376 811617 0.747251 + . ID=CGI_10027304; scaffold3 WUBlastX LINE_L1-Tx1 805736 805894 23 + . . scaffold3 WUBlastX LINE_L1 805839 806372 36 + . . scaffold3 WUBlastX LINE_L1 806169 806294 46 + . . scaffold3 TRF Tandem_Repeat 818214 818856 725 + . . scaffold3 WUBlastX DNA_PiggyBac 819627 819836 74 - . . scaffold3 WUBlastX DNA_PiggyBac 819684 819830 80 - . . scaffold3 TRF Tandem_Repeat 830249 830287 78 + . . scaffold3 TRF Tandem_Repeat 832184 832213 60 + . . scaffold3 TRF Tandem_Repeat 835789 835845 51 + . . scaffold3 TRF Tandem_Repeat 835789 835823 52 + . . scaffold3 TRF Tandem_Repeat 836826 836857 64 + . . scaffold3 GLEAN mRNA 839944 844686 1 - . ID=CGI_10027305; scaffold3 GLEAN promoter 844578 845577 0.652101 + . ID=CGI_10027306; scaffold3 GLEAN promoter 844687 845686 1 - . ID=CGI_10027305; scaffold3 GLEAN mRNA 845578 851224 0.652101 + . ID=CGI_10027306; scaffold3 GLEAN promoter 852105 853104 0.8022 + . ID=CGI_10027307; scaffold3 GLEAN mRNA 853105 853752 0.8022 + . ID=CGI_10027307; scaffold3 GLEAN mRNA 858652 868174 0.835749 - . ID=CGI_10027308; scaffold3 TRF Tandem_Repeat 866168 866894 1027 + . . scaffold3 GLEAN promoter 868175 869174 0.835749 - . ID=CGI_10027308; scaffold3 GLEAN promoter 877635 878634 0.997719 + . ID=CGI_10027309; scaffold3 GLEAN mRNA 878635 885359 0.997719 + . ID=CGI_10027309; scaffold3 GLEAN mRNA 886287 892877 0.986991 - . ID=CGI_10027310; scaffold3 TRF Tandem_Repeat 890432 891033 870 + . . scaffold3 GLEAN promoter 892878 893877 0.986991 - . ID=CGI_10027310; scaffold3 WUBlastX LINE_CR1-L2 893484 894026 33 + . . scaffold3 WUBlastX LINE_RTE-X 893568 894200 155 + . . scaffold3 TRF Tandem_Repeat 895253 895333 51 + . . scaffold3 TRF Tandem_Repeat 896413 896527 101 + . . scaffold3 TRF Tandem_Repeat 896417 896538 50 + . . scaffold3 TRF Tandem_Repeat 896428 896494 61 + . . scaffold3 GLEAN promoter 898379 899378 0.618241 + . ID=CGI_10027311; scaffold3 GLEAN mRNA 899379 899615 0.618241 + . ID=CGI_10027311; scaffold3 GLEAN mRNA 900022 905947 1 - . ID=CGI_10027312; scaffold3 GLEAN promoter 905204 906203 1 + . ID=CGI_10027313; scaffold3 GLEAN promoter 905948 906947 1 - . ID=CGI_10027312; scaffold3 GLEAN mRNA 906204 908946 1 + . ID=CGI_10027313; scaffold3 TRF Tandem_Repeat 919792 919816 50 + . . scaffold3 GLEAN promoter 922003 923002 0.987084 + . ID=CGI_10027315; scaffold3 GLEAN mRNA 923003 939742 0.987084 + . ID=CGI_10027315; scaffold3 TRF Tandem_Repeat 927185 927281 185 + . . scaffold3 TRF Tandem_Repeat 927185 927279 153 + . . scaffold3 TRF Tandem_Repeat 929891 930063 211 + . . scaffold3 TRF Tandem_Repeat 929891 930062 208 + . . scaffold3 TRF Tandem_Repeat 937583 937666 168 + . . scaffold3 WUBlastX LINE_RTE-X 942389 943099 91 + . . scaffold3 WUBlastX LINE_RTE-X 942596 943099 141 + . . scaffold3 WUBlastX LINE_RTE-X 944066 944404 22 + . . scaffold3 WUBlastX LINE_L1-Tx1 944117 944452 49 + . . scaffold3 WUBlastX LINE_L2 944370 944696 56 + . . scaffold3 WUBlastX LINE_Jockey 944427 944774 77 + . . scaffold3 WUBlastX LINE_RTE-X 944451 944744 137 + . . scaffold3 WUBlastX LINE_RTE-X 944732 944821 50 + . . scaffold3 WUBlastX LINE_RTE-X 944798 946033 163 + . . scaffold3 GLEAN promoter 945459 946458 0.555132 + . ID=CGI_10027316; scaffold3 WUBlastX LINE_RTE-X 945920 946063 54 + . . scaffold3 GLEAN mRNA 946459 958838 0.555132 + . ID=CGI_10027316; scaffold3 WUBlastX LTR_Ngaro 948886 949593 185 + . . scaffold3 WUBlastX LTR_Ngaro 949003 949599 265 + . . scaffold3 TRF Tandem_Repeat 951950 951975 52 + . . scaffold3 GLEAN promoter 957982 958981 0.663393 + . ID=CGI_10027317; scaffold3 GLEAN mRNA 958982 982969 0.663393 + . ID=CGI_10027317; scaffold3 WUBlastX LTR_Ngaro 972496 973029 139 - . . scaffold3 WUBlastX LTR_Ngaro 972956 973357 23 - . . scaffold3 WUBlastX LTR_Ngaro 973294 974598 116 - . . scaffold3 WUBlastX LTR_Ngaro 973297 973938 146 - . . scaffold3 WUBlastX LTR_Ngaro 974350 974796 97 - . . scaffold3 WUBlastX DNA_Sola 993645 993890 41 - . . scaffold3 WUBlastX LTR_Ngaro 998899 999984 210 + . . scaffold3 WUBlastX LTR_Ngaro 999962 1000960 684 + . . scaffold3 WUBlastX LTR_Ngaro 1001747 1002490 346 + . . scaffold3 WUBlastX LTR_Gypsy 1004396 1004644 59 - . . scaffold3 WUBlastX LTR_Gypsy 1004475 1004582 74 - . . scaffold3 WUBlastX LTR_Gypsy 1004581 1005066 157 - . . scaffold3 WUBlastX LTR_Gypsy 1004659 1005261 143 - . . scaffold3 WUBlastX LTR_Gypsy 1004659 1005066 261 - . . scaffold3 WUBlastX LTR_Gypsy 1005071 1005367 115 - . . scaffold3 WUBlastX LTR_Gypsy 1005071 1005424 105 - . . scaffold3 WUBlastX LTR_Gypsy 1005490 1005531 22 - . . scaffold3 WUBlastX LTR_Gypsy 1005505 1005534 27 - . . scaffold3 WUBlastX LTR_Gypsy 1005626 1006756 179 - . . scaffold3 WUBlastX LTR_Gypsy 1005851 1006600 187 - . . scaffold3 WUBlastX LTR_Gypsy 1005851 1006741 183 - . . scaffold3 WUBlastX LTR_Gypsy 1006112 1006606 196 - . . scaffold3 WUBlastX LTR_Gypsy 1006127 1006900 142 - . . scaffold3 TRF Tandem_Repeat 1009365 1009404 80 + . . scaffold3 TRF Tandem_Repeat 1009849 1009889 82 + . . scaffold3 TRF Tandem_Repeat 1009889 1009930 84 + . . scaffold3 TRF Tandem_Repeat 1019442 1019486 72 + . . scaffold3 TRF Tandem_Repeat 1019525 1019593 131 + . . scaffold3 GLEAN promoter 1028563 1029562 0.999999 + . ID=CGI_10027318; scaffold3 GLEAN mRNA 1029563 1030663 0.999999 + . ID=CGI_10027318; scaffold3 TRF Tandem_Repeat 1050507 1050841 468 + . . scaffold3 TRF Tandem_Repeat 1050507 1050841 477 + . . scaffold3 TRF Tandem_Repeat 1050623 1050785 79 + . . scaffold3 TRF Tandem_Repeat 1056142 1057024 1160 + . . scaffold3 GLEAN mRNA 1065943 1067736 0.999988 - . ID=CGI_10027319; scaffold3 GLEAN promoter 1067737 1068736 0.999988 - . ID=CGI_10027319; scaffold3 GLEAN promoter 1072103 1073102 0.648527 + . ID=CGI_10027320; scaffold3 GLEAN mRNA 1073103 1083081 0.648527 + . ID=CGI_10027320; scaffold3 GLEAN mRNA 1083898 1084242 0.999372 - . ID=CGI_10027321; scaffold3 GLEAN promoter 1084243 1085242 0.999372 - . ID=CGI_10027321; scaffold3 TRF Tandem_Repeat 1086073 1086102 51 + . . scaffold3 TRF Tandem_Repeat 1086343 1086463 140 + . . scaffold3 GLEAN mRNA 1087077 1088856 1 - . ID=CGI_10027322; scaffold3 GLEAN promoter 1088857 1089856 1 - . ID=CGI_10027322; scaffold3 TRF Tandem_Repeat 1089783 1089915 221 + . . scaffold3 GLEAN promoter 1091030 1092029 1 + . ID=CGI_10027323; scaffold3 TRF Tandem_Repeat 1091136 1091162 54 + . . scaffold3 GLEAN mRNA 1092030 1095946 1 + . ID=CGI_10027323; scaffold3 TRF Tandem_Repeat 1093593 1093617 50 + . . scaffold3 GLEAN mRNA 1096182 1101415 1 - . ID=CGI_10027324; scaffold3 GLEAN promoter 1101416 1102415 1 - . ID=CGI_10027324; scaffold3 TRF Tandem_Repeat 1101666 1101727 124 + . . scaffold3 GLEAN mRNA 1105989 1116638 0.84036 - . ID=CGI_10027325; scaffold3 GLEAN promoter 1116639 1117638 0.84036 - . ID=CGI_10027325; scaffold3 TRF Tandem_Repeat 1117120 1117176 114 + . . scaffold3 GLEAN mRNA 1130767 1149453 0.998898 - . ID=CGI_10027326; scaffold3 GLEAN promoter 1149454 1150453 0.998898 - . ID=CGI_10027326; scaffold3 GLEAN mRNA 1149666 1172121 0.998753 - . ID=CGI_10027327; scaffold3 TRF Tandem_Repeat 1153989 1154112 77 + . . scaffold3 TRF Tandem_Repeat 1159646 1159712 80 + . . scaffold3 TRF Tandem_Repeat 1162285 1162331 94 + . . scaffold3 TRF Tandem_Repeat 1162521 1162570 55 + . . scaffold3 TRF Tandem_Repeat 1162521 1162570 55 + . . scaffold3 TRF Tandem_Repeat 1162541 1162570 51 + . . scaffold3 TRF Tandem_Repeat 1163065 1163131 71 + . . scaffold3 TRF Tandem_Repeat 1170375 1170403 58 + . . scaffold3 TRF Tandem_Repeat 1170698 1170724 54 + . . scaffold3 GLEAN promoter 1172122 1173121 0.998753 - . ID=CGI_10027327; scaffold3 GLEAN promoter 1175920 1176919 0.700522 + . ID=CGI_10027328; scaffold3 TRF Tandem_Repeat 1176542 1176604 117 + . . scaffold3 GLEAN mRNA 1176920 1195498 0.700522 + . ID=CGI_10027328; scaffold3 TRF Tandem_Repeat 1185043 1185155 65 + . . scaffold3 TRF Tandem_Repeat 1185276 1186205 1370 + . . scaffold3 TRF Tandem_Repeat 1197867 1198973 1281 + . . scaffold3 TRF Tandem_Repeat 1199143 1199178 54 + . . scaffold3 TRF Tandem_Repeat 1204270 1204316 55 + . . scaffold3 TRF Tandem_Repeat 1220041 1220098 116 + . . scaffold3 WUBlastX LINE_L1-Tx1 1228056 1228358 52 + . . scaffold3 WUBlastX LINE_L1-Tx1 1228074 1228478 44 + . . scaffold3 TRF Tandem_Repeat 1230780 1230847 136 + . . scaffold3 TRF Tandem_Repeat 1236556 1237548 1239 + . . scaffold3 GLEAN promoter 1237040 1238039 0.794245 + . ID=CGI_10027329; scaffold3 GLEAN mRNA 1238040 1242298 0.794245 + . ID=CGI_10027329; scaffold3 TRF Tandem_Repeat 1240390 1240453 53 + . . scaffold3 TRF Tandem_Repeat 1242559 1242618 90 + . . scaffold3 GLEAN mRNA 1248510 1255450 0.264402 - . ID=CGI_10027330; scaffold3 TRF Tandem_Repeat 1249317 1249401 170 + . . scaffold3 TRF Tandem_Repeat 1251428 1251557 63 + . . scaffold3 TRF Tandem_Repeat 1251435 1251556 82 + . . scaffold3 TRF Tandem_Repeat 1252546 1252608 57 + . . scaffold3 TRF Tandem_Repeat 1252557 1252671 59 + . . scaffold3 GLEAN promoter 1255451 1256450 0.264402 - . ID=CGI_10027330; scaffold3 WUBlastX LINE_L1 1257520 1257930 108 + . . scaffold3 WUBlastX LINE_L1-Tx1 1257592 1257936 169 + . . scaffold3 WUBlastX LINE_L2 1257941 1258024 24 + . . scaffold3 WUBlastX LINE_L1-Tx1 1257956 1258789 340 + . . scaffold3 WUBlastX LINE_L1-Tx1 1258786 1259781 729 + . . scaffold3 WUBlastX LINE_L1-Tx1 1258801 1259961 286 + . . scaffold3 WUBlastX LINE_L1-Tx1 1259781 1261070 253 + . . scaffold3 TRF Tandem_Repeat 1261213 1261254 84 + . . scaffold3 GLEAN mRNA 1263549 1265445 0.999999 - . ID=CGI_10027331; scaffold3 GLEAN promoter 1265446 1266445 0.999999 - . ID=CGI_10027331; scaffold3 GLEAN mRNA 1267796 1268956 0.999572 - . ID=CGI_10027332; scaffold3 GLEAN promoter 1268957 1269956 0.999572 - . ID=CGI_10027332; scaffold3 WUBlastX LINE_CR1-L2 1276099 1276338 46 + . . scaffold3 GLEAN promoter 1276880 1277879 1 + . ID=CGI_10027333; scaffold3 GLEAN promoter 1277330 1278329 0.777728 + . ID=CGI_10027334; scaffold3 GLEAN mRNA 1277880 1278167 1 + . ID=CGI_10027333; scaffold3 GLEAN mRNA 1278330 1278539 0.777728 + . ID=CGI_10027334; scaffold3 GLEAN mRNA 1280670 1282495 0.999661 - . ID=CGI_10027335; scaffold3 GLEAN promoter 1282496 1283495 0.999661 - . ID=CGI_10027335; scaffold3 GLEAN promoter 1288858 1289857 0.999997 + . ID=CGI_10027336; scaffold3 GLEAN mRNA 1289858 1291805 0.999997 + . ID=CGI_10027336; scaffold3 WUBlastX RC_Helitron 1298239 1299186 58 - . . scaffold3 WUBlastX RC_Helitron 1298422 1299174 89 - . . scaffold3 WUBlastX RC_Helitron 1298596 1299219 96 - . . scaffold3 WUBlastX RC_Helitron 1298680 1299174 148 - . . scaffold3 WUBlastX RC_Helitron 1299240 1301519 851 - . . scaffold3 WUBlastX RC_Helitron 1302233 1302490 87 - . . scaffold3 WUBlastX RC_Helitron 1302715 1304592 814 - . . scaffold3 TRF Tandem_Repeat 1304642 1305136 578 + . . scaffold3 GLEAN mRNA 1314645 1318382 0.999612 - . ID=CGI_10027337; scaffold3 WUBlastX LTR_Ngaro 1314969 1315355 171 - . . scaffold3 WUBlastX LTR_Ngaro 1315370 1315882 128 - . . scaffold3 WUBlastX LTR_Ngaro 1315852 1316739 69 - . . scaffold3 WUBlastX LTR_Ngaro 1315938 1316159 115 - . . scaffold3 WUBlastX LTR_Ngaro 1316434 1316787 143 - . . scaffold3 WUBlastX LTR_Ngaro 1316759 1317388 283 - . . scaffold3 WUBlastX LTR_Ngaro 1317717 1317779 26 - . . scaffold3 WUBlastX LTR_Ngaro 1317781 1318104 102 - . . scaffold3 GLEAN promoter 1318383 1319382 0.999612 - . ID=CGI_10027337; scaffold3 GLEAN mRNA 1323444 1324284 0.70818 - . ID=CGI_10027338; scaffold3 GLEAN promoter 1324285 1325284 0.70818 - . ID=CGI_10027338; scaffold3 WUBlastX RC_Helitron 1327945 1330533 1365 - . . scaffold3 WUBlastX RC_Helitron 1328452 1333122 1444 - . . scaffold3 WUBlastX RC_Helitron 1330108 1333164 1892 - . . scaffold3 TRF Tandem_Repeat 1334734 1335294 804 + . . scaffold3 TRF Tandem_Repeat 1334859 1335226 185 + . . scaffold30010 GLEAN promoter 2390 3389 1 + . ID=CGI_10000589; scaffold30010 GLEAN mRNA 3390 5646 1 + . ID=CGI_10000589; scaffold30078 TRF Tandem_Repeat 838 922 134 + . . scaffold30078 TRF Tandem_Repeat 838 922 134 + . . scaffold30078 TRF Tandem_Repeat 838 922 134 + . . scaffold30078 WUBlastX LINE_L1 6207 6386 44 + . . scaffold30078 WUBlastX LINE_L1 6222 6359 53 + . . scaffold301 WUBlastX LINE_L1-Tx1 3 707 301 - . . scaffold301 WUBlastX LINE_L1-Tx1 752 1960 593 - . . scaffold301 WUBlastX LINE_L2 3323 4075 125 - . . scaffold301 GLEAN promoter 9628 10627 0.996518 + . ID=CGI_10026706; scaffold301 GLEAN mRNA 10628 26348 0.996518 + . ID=CGI_10026706; scaffold301 TRF Tandem_Repeat 29735 29784 82 + . . scaffold301 TRF Tandem_Repeat 29925 29974 82 + . . scaffold301 GLEAN mRNA 35700 44749 0.99219 - . ID=CGI_10026707; scaffold301 GLEAN promoter 44750 45749 0.99219 - . ID=CGI_10026707; scaffold301 TRF Tandem_Repeat 46573 46666 89 + . . scaffold301 TRF Tandem_Repeat 46874 47012 136 + . . scaffold301 TRF Tandem_Repeat 47089 47180 103 + . . scaffold301 TRF Tandem_Repeat 47395 47495 112 + . . scaffold301 TRF Tandem_Repeat 47567 47665 99 + . . scaffold301 TRF Tandem_Repeat 47703 47876 215 + . . scaffold301 TRF Tandem_Repeat 47942 48033 121 + . . scaffold301 TRF Tandem_Repeat 48084 48222 163 + . . scaffold301 TRF Tandem_Repeat 50928 51026 99 + . . scaffold301 TRF Tandem_Repeat 51064 51237 215 + . . scaffold301 TRF Tandem_Repeat 51303 51394 121 + . . scaffold301 TRF Tandem_Repeat 51445 51583 163 + . . scaffold301 TRF Tandem_Repeat 57244 57272 51 + . . scaffold301 GLEAN mRNA 58869 68425 0.999957 - . ID=CGI_10026708; scaffold301 TRF Tandem_Repeat 61520 61550 62 + . . scaffold301 GLEAN promoter 68426 69425 0.999957 - . ID=CGI_10026708; scaffold301 TRF Tandem_Repeat 68563 68589 54 + . . scaffold301 TRF Tandem_Repeat 69511 69574 128 + . . scaffold301 WUBlastX LINE_CR1 71423 71509 23 + . . scaffold301 WUBlastX LINE_CR1-L2 71560 72081 331 + . . scaffold301 WUBlastX LINE_CR1 71572 72192 189 + . . scaffold301 WUBlastX LINE_CR1-L2 72126 72293 65 + . . scaffold301 WUBlastX LINE_CR1 72275 72385 32 + . . scaffold301 WUBlastX LINE_CR1 72281 72352 35 + . . scaffold301 WUBlastX LINE_I 76504 76644 22 + . . scaffold301 WUBlastX LINE_CR1 76531 77325 112 + . . scaffold301 WUBlastX LINE_RTE-X 76681 78558 947 + . . scaffold301 GLEAN mRNA 82950 97847 0.75277 - . ID=CGI_10026709; scaffold301 TRF Tandem_Repeat 97386 97443 116 + . . scaffold301 GLEAN promoter 97848 98847 0.75277 - . ID=CGI_10026709; scaffold301 TRF Tandem_Repeat 101728 101765 76 + . . scaffold301 WUBlastX DNA_Harbinger 103048 103635 171 - . . scaffold301 WUBlastX DNA_Harbinger 103084 104079 147 - . . scaffold301 WUBlastX DNA_Harbinger 103207 103707 214 - . . scaffold301 TRF Tandem_Repeat 104577 104652 116 + . . scaffold301 TRF Tandem_Repeat 108033 108117 125 + . . scaffold301 TRF Tandem_Repeat 125071 125156 109 + . . scaffold301 TRF Tandem_Repeat 133912 133992 57 + . . scaffold301 TRF Tandem_Repeat 133950 133984 54 + . . scaffold301 TRF Tandem_Repeat 135631 135669 78 + . . scaffold301 TRF Tandem_Repeat 136410 136457 96 + . . scaffold301 GLEAN promoter 137067 138066 0.866369 + . ID=CGI_10026710; scaffold301 GLEAN mRNA 138067 140380 0.866369 + . ID=CGI_10026710; scaffold301 TRF Tandem_Repeat 166377 166456 160 + . . scaffold301 TRF Tandem_Repeat 167212 167263 104 + . . scaffold301 TRF Tandem_Repeat 172191 172313 183 + . . scaffold301 TRF Tandem_Repeat 184029 184065 51 + . . scaffold301 TRF Tandem_Repeat 185131 185184 108 + . . scaffold301 TRF Tandem_Repeat 188214 188263 100 + . . scaffold301 GLEAN mRNA 194032 202162 1 - . ID=CGI_10026711; scaffold301 GLEAN promoter 202163 203162 1 - . ID=CGI_10026711; scaffold301 TRF Tandem_Repeat 207671 207720 50 + . . scaffold301 WUBlastX LINE_RTE-X 213441 214832 663 - . . scaffold301 WUBlastX LINE_L2 214491 214922 63 - . . scaffold301 TRF Tandem_Repeat 230517 230552 54 + . . scaffold301 TRF Tandem_Repeat 235580 235662 71 + . . scaffold301 WUBlastX LINE_RTE-X 236308 236700 25 - . . scaffold301 WUBlastX LINE_RTE-X 236401 236685 45 - . . scaffold301 WUBlastX LINE_RTE-X 236455 236661 62 - . . scaffold301 WUBlastX LINE_RTE-X 236491 236655 74 - . . scaffold301 WUBlastX LINE_RTE-X 236675 237181 119 - . . scaffold301 WUBlastX LINE_RTE-X 236775 237569 181 - . . scaffold301 WUBlastX LINE_RTE-X 237177 237662 189 - . . scaffold301 TRF Tandem_Repeat 241253 241283 53 + . . scaffold301 GLEAN promoter 241974 242973 0.438352 + . ID=CGI_10026712; scaffold301 GLEAN mRNA 242974 261329 0.438352 + . ID=CGI_10026712; scaffold301 TRF Tandem_Repeat 254947 254995 98 + . . scaffold301 TRF Tandem_Repeat 255856 255967 162 + . . scaffold301 TRF Tandem_Repeat 259544 259575 64 + . . scaffold301 TRF Tandem_Repeat 260539 260582 88 + . . scaffold301 GLEAN mRNA 262835 265201 0.648478 - . ID=CGI_10026713; scaffold301 GLEAN promoter 265202 266201 0.648478 - . ID=CGI_10026713; scaffold301 GLEAN promoter 268444 269443 0.993094 + . ID=CGI_10026714; scaffold301 GLEAN mRNA 269444 279722 0.993094 + . ID=CGI_10026714; scaffold301 TRF Tandem_Repeat 297511 297554 88 + . . scaffold301 TRF Tandem_Repeat 299876 299950 141 + . . scaffold301 GLEAN mRNA 302608 304122 0.996497 - . ID=CGI_10026715; scaffold301 GLEAN promoter 304123 305122 0.996497 - . ID=CGI_10026715; scaffold301 TRF Tandem_Repeat 310569 310689 75 + . . scaffold301 TRF Tandem_Repeat 310569 310687 52 + . . scaffold301 TRF Tandem_Repeat 310589 310681 95 + . . scaffold301 TRF Tandem_Repeat 310598 310687 63 + . . scaffold301 TRF Tandem_Repeat 310634 310691 61 + . . scaffold301 TRF Tandem_Repeat 325090 325114 50 + . . scaffold301 TRF Tandem_Repeat 333520 333721 316 + . . scaffold301 TRF Tandem_Repeat 335324 335350 54 + . . scaffold301 GLEAN promoter 335776 336775 0.999911 + . ID=CGI_10026716; scaffold301 GLEAN mRNA 336776 343084 0.999911 + . ID=CGI_10026716; scaffold301 TRF Tandem_Repeat 342331 342356 52 + . . scaffold301 GLEAN promoter 342830 343829 0.9173 + . ID=CGI_10026717; scaffold301 GLEAN mRNA 343830 350041 0.9173 + . ID=CGI_10026717; scaffold301 TRF Tandem_Repeat 344809 344850 84 + . . scaffold301 TRF Tandem_Repeat 360862 360928 89 + . . scaffold301 TRF Tandem_Repeat 363267 363333 89 + . . scaffold301 TRF Tandem_Repeat 366620 366660 82 + . . scaffold301 GLEAN promoter 367057 368056 0.544852 + . ID=CGI_10026718; scaffold301 GLEAN mRNA 368057 368287 0.544852 + . ID=CGI_10026718; scaffold301 TRF Tandem_Repeat 368585 368651 89 + . . scaffold301 TRF Tandem_Repeat 371030 371080 102 + . . scaffold301 TRF Tandem_Repeat 371268 371300 66 + . . scaffold301 TRF Tandem_Repeat 371298 371331 68 + . . scaffold301 TRF Tandem_Repeat 371826 371892 89 + . . scaffold301 GLEAN promoter 372323 373322 0.998422 + . ID=CGI_10026719; scaffold301 GLEAN mRNA 373323 384233 0.998422 + . ID=CGI_10026719; scaffold301 TRF Tandem_Repeat 376423 376448 52 + . . scaffold301 GLEAN promoter 384076 385075 0.811406 + . ID=CGI_10026720; scaffold301 GLEAN mRNA 385076 401217 0.811406 + . ID=CGI_10026720; scaffold301 TRF Tandem_Repeat 388407 388475 86 + . . scaffold301 WUBlastX LINE_RTE-X 394959 395792 170 - . . scaffold301 WUBlastX LINE_RTE-X 395780 396844 632 - . . scaffold301 WUBlastX LINE_Jockey 395957 397165 71 - . . scaffold301 TRF Tandem_Repeat 402514 402559 92 + . . scaffold301 TRF Tandem_Repeat 406395 406451 114 + . . scaffold301 GLEAN promoter 415213 416212 0.911488 + . ID=CGI_10026721; scaffold301 GLEAN mRNA 416213 429474 0.911488 + . ID=CGI_10026721; scaffold301 TRF Tandem_Repeat 417960 418008 98 + . . scaffold301 TRF Tandem_Repeat 419397 419443 94 + . . scaffold301 TRF Tandem_Repeat 425481 425532 95 + . . scaffold301 TRF Tandem_Repeat 427392 427423 55 + . . scaffold301 TRF Tandem_Repeat 443615 443684 140 + . . scaffold301 TRF Tandem_Repeat 450948 450993 92 + . . scaffold301 TRF Tandem_Repeat 459657 460529 1407 + . . scaffold301 TRF Tandem_Repeat 481061 481162 125 + . . scaffold301 TRF Tandem_Repeat 482716 482744 58 + . . scaffold301 TRF Tandem_Repeat 483849 483888 80 + . . scaffold301 TRF Tandem_Repeat 484308 484429 102 + . . scaffold301 TRF Tandem_Repeat 498143 498170 56 + . . scaffold301 TRF Tandem_Repeat 499150 499186 74 + . . scaffold301 WUBlastX DNA_Sola 506734 506853 23 - . . scaffold301 TRF Tandem_Repeat 506917 506976 66 + . . scaffold301 WUBlastX DNA_Sola 507840 507947 45 - . . scaffold301 GLEAN promoter 510599 511598 0.618117 + . ID=CGI_10026722; scaffold301 GLEAN mRNA 511599 512279 0.618117 + . ID=CGI_10026722; scaffold301 GLEAN mRNA 515134 528114 0.999355 - . ID=CGI_10026723; scaffold301 WUBlastX DNA_TcMar-ISRm1 515194 515430 68 - . . scaffold301 WUBlastX DNA_TcMar-ISRm1 515236 516081 87 - . . scaffold301 GLEAN promoter 528115 529114 0.999355 - . ID=CGI_10026723; scaffold301 TRF Tandem_Repeat 539112 539188 79 + . . scaffold301 TRF Tandem_Repeat 539135 539190 112 + . . scaffold301 TRF Tandem_Repeat 541916 541972 114 + . . scaffold301 TRF Tandem_Repeat 542471 542539 129 + . . scaffold301 TRF Tandem_Repeat 543664 543714 102 + . . scaffold301 TRF Tandem_Repeat 550617 550692 152 + . . scaffold301 TRF Tandem_Repeat 552574 552618 90 + . . scaffold301 WUBlastX LINE_L2 553194 553253 20 - . . scaffold301 TRF Tandem_Repeat 553355 553422 118 + . . scaffold301 WUBlastX LINE_L2 554012 554962 104 - . . scaffold301 WUBlastX LINE_L2 554174 555094 329 - . . scaffold301 WUBlastX LINE_CR1-L2 555206 555259 33 - . . scaffold301 GLEAN mRNA 557742 558662 0.999999 - . ID=CGI_10026724; scaffold301 WUBlastX LINE_RTE-X 557787 558992 536 - . . scaffold301 GLEAN promoter 558663 559662 0.999999 - . ID=CGI_10026724; scaffold301 WUBlastX LINE_RTE-X 558974 560158 552 - . . scaffold301 WUBlastX LINE_RTE-X 559013 560536 483 - . . scaffold301 WUBlastX LINE_RTE-X 560524 560781 68 - . . scaffold301 WUBlastX LINE_RTE-X 560768 561169 140 - . . scaffold301 WUBlastX LINE_CR1 560807 561241 42 - . . scaffold301 WUBlastX LINE_L1 561322 561882 238 - . . scaffold301 TRF Tandem_Repeat 565770 565794 50 + . . scaffold301 TRF Tandem_Repeat 567500 567548 98 + . . scaffold301 GLEAN promoter 570124 571123 0.998574 + . ID=CGI_10026725; scaffold301 GLEAN mRNA 571124 578404 0.998574 + . ID=CGI_10026725; scaffold301 GLEAN mRNA 580482 604494 0.999942 - . ID=CGI_10026726; scaffold301 GLEAN promoter 604495 605494 0.999942 - . ID=CGI_10026726; scaffold301 TRF Tandem_Repeat 608122 608184 126 + . . scaffold301 TRF Tandem_Repeat 620327 620628 498 + . . scaffold301 TRF Tandem_Repeat 625912 625958 94 + . . scaffold301 WUBlastX LINE_Penelope 627095 627370 76 - . . scaffold301 WUBlastX LINE_Penelope 627134 627715 63 - . . scaffold301 WUBlastX LINE_Penelope 627143 627583 115 - . . scaffold301 WUBlastX LINE_Penelope 627143 627508 173 - . . scaffold301 WUBlastX LINE_Penelope 627681 629021 467 + . . scaffold301 WUBlastX LINE_Penelope 628785 629063 48 + . . scaffold301 WUBlastX LTR_Gypsy-Cigr 633035 634246 696 - . . scaffold301 WUBlastX LTR_Gypsy 633218 634249 748 - . . scaffold301 TRF Tandem_Repeat 676446 676487 84 + . . scaffold301 TRF Tandem_Repeat 677359 677385 54 + . . scaffold301 WUBlastX LTR_Ngaro 697593 697874 48 - . . scaffold301 WUBlastX LTR_Ngaro 697593 697817 79 - . . scaffold301 WUBlastX LTR_Ngaro 697877 698170 88 - . . scaffold301 WUBlastX LTR_Ngaro 698384 699304 443 - . . scaffold301 TRF Tandem_Repeat 716433 716485 92 + . . scaffold301 WUBlastX DNA_Sola 722876 723109 33 + . . scaffold301 WUBlastX DNA_Sola 723193 723672 145 + . . scaffold301 WUBlastX DNA_Sola 723277 723693 161 + . . scaffold301 WUBlastX DNA_Sola 723674 724033 153 + . . scaffold301 WUBlastX DNA_Sola 723680 724255 105 + . . scaffold301 GLEAN mRNA 731755 749414 0.999069 - . ID=CGI_10026727; scaffold301 TRF Tandem_Repeat 737561 737642 92 + . . scaffold301 GLEAN promoter 740742 741741 1 + . ID=CGI_10026728; scaffold301 GLEAN mRNA 741742 743363 1 + . ID=CGI_10026728; scaffold301 GLEAN promoter 749415 750414 0.999069 - . ID=CGI_10026727; scaffold301 GLEAN mRNA 751404 765035 0.999676 - . ID=CGI_10026729; scaffold301 TRF Tandem_Repeat 761288 761333 74 + . . scaffold301 TRF Tandem_Repeat 762599 762639 82 + . . scaffold301 TRF Tandem_Repeat 764350 764816 637 + . . scaffold301 GLEAN promoter 765036 766035 0.999676 - . ID=CGI_10026729; scaffold301 TRF Tandem_Repeat 766265 766304 62 + . . scaffold301 TRF Tandem_Repeat 766403 766449 73 + . . scaffold301 TRF Tandem_Repeat 766404 766449 65 + . . scaffold301 TRF Tandem_Repeat 767132 767162 55 + . . scaffold301 TRF Tandem_Repeat 767331 767375 90 + . . scaffold301 GLEAN mRNA 769797 775100 0.998638 - . ID=CGI_10026730; scaffold301 TRF Tandem_Repeat 774340 774379 80 + . . scaffold301 GLEAN promoter 775101 776100 0.998638 - . ID=CGI_10026730; scaffold301 TRF Tandem_Repeat 775443 775495 99 + . . scaffold301 TRF Tandem_Repeat 782573 782620 96 + . . scaffold301 TRF Tandem_Repeat 782771 782806 72 + . . scaffold301 TRF Tandem_Repeat 785156 785286 226 + . . scaffold301 TRF Tandem_Repeat 786317 786376 102 + . . scaffold301 TRF Tandem_Repeat 786394 786419 52 + . . scaffold301 TRF Tandem_Repeat 794887 795099 399 + . . scaffold301 GLEAN promoter 798491 799490 0.999675 + . ID=CGI_10026731; scaffold301 GLEAN mRNA 799491 803727 0.999675 + . ID=CGI_10026731; scaffold301 TRF Tandem_Repeat 830359 830414 58 + . . scaffold301 TRF Tandem_Repeat 830368 830415 60 + . . scaffold301 TRF Tandem_Repeat 832478 832505 56 + . . scaffold301 GLEAN mRNA 835410 852905 0.988961 - . ID=CGI_10026732; scaffold301 TRF Tandem_Repeat 835547 835843 462 + . . scaffold301 TRF Tandem_Repeat 835547 836097 683 + . . scaffold301 TRF Tandem_Repeat 835547 836097 726 + . . scaffold301 TRF Tandem_Repeat 835845 836097 316 + . . scaffold301 GLEAN promoter 852906 853905 0.988961 - . ID=CGI_10026732; scaffold301 GLEAN mRNA 856266 869441 0.9422 - . ID=CGI_10026733; scaffold301 GLEAN promoter 869442 870441 0.9422 - . ID=CGI_10026733; scaffold301 GLEAN mRNA 870579 870737 1 - . ID=CGI_10026734; scaffold301 GLEAN promoter 870738 871737 1 - . ID=CGI_10026734; scaffold301 WUBlastX LTR_Gypsy 870801 870932 24 - . . scaffold301 WUBlastX LTR_Gypsy 870825 872909 1818 - . . scaffold301 WUBlastX LTR_Gypsy 872906 874723 1433 - . . scaffold301 WUBlastX LTR_Gypsy 874813 875730 100 - . . scaffold301 WUBlastX LTR_Gypsy 875014 875811 391 - . . scaffold301 WUBlastX LTR_Gypsy 875239 875937 46 - . . scaffold301 GLEAN mRNA 879838 886283 0.981114 - . ID=CGI_10026736; scaffold301 GLEAN promoter 886284 887283 0.981114 - . ID=CGI_10026736; scaffold301 TRF Tandem_Repeat 888824 889693 1523 + . . scaffold301 WUBlastX LINE_L2 908083 908622 73 + . . scaffold301 WUBlastX LINE_L2 908185 908568 75 + . . scaffold301 WUBlastX LINE_L2 908571 908756 59 + . . scaffold301 WUBlastX LINE_L2 908574 908816 54 + . . scaffold301 WUBlastX LINE_L1 909180 909236 47 + . . scaffold301 WUBlastX LINE_L1-Tx1 909183 909275 32 + . . scaffold301 WUBlastX LINE_L1 909273 910880 256 + . . scaffold301 WUBlastX LINE_L1-Tx1 909516 911342 532 + . . scaffold301 WUBlastX LINE_L1-Tx1 910931 912310 239 + . . scaffold301 TRF Tandem_Repeat 913582 913606 50 + . . scaffold301 TRF Tandem_Repeat 918448 918487 80 + . . scaffold301 TRF Tandem_Repeat 930547 930759 105 + . . scaffold301 TRF Tandem_Repeat 932083 932136 108 + . . scaffold301 GLEAN mRNA 935860 957762 0.976661 - . ID=CGI_10026737; scaffold301 TRF Tandem_Repeat 937252 937294 86 + . . scaffold301 TRF Tandem_Repeat 938143 938181 78 + . . scaffold301 TRF Tandem_Repeat 940049 940101 61 + . . scaffold301 WUBlastX DNA_Sola 946578 947273 199 - . . scaffold301 WUBlastX DNA_Sola 946686 947285 229 - . . scaffold301 WUBlastX DNA_Sola 946779 947378 69 - . . scaffold301 WUBlastX DNA_Sola 950913 951134 24 - . . scaffold301 WUBlastX DNA_Sola 950973 951137 27 - . . scaffold301 WUBlastX DNA_Sola 951223 951426 36 - . . scaffold301 WUBlastX DNA_Sola 951253 951420 61 - . . scaffold301 WUBlastX DNA_Sola 951256 951522 23 - . . scaffold301 WUBlastX DNA_Sola 951533 951730 127 - . . scaffold301 WUBlastX DNA_Sola 952012 953301 619 - . . scaffold301 WUBlastX DNA_Sola 956451 956660 59 - . . scaffold301 WUBlastX DNA_Sola 956466 956624 65 - . . scaffold301 WUBlastX DNA_Sola 957526 957729 36 - . . scaffold301 GLEAN promoter 957763 958762 0.976661 - . ID=CGI_10026737; scaffold301 WUBlastX LINE_L1 978031 978330 34 + . . scaffold301 WUBlastX LINE_L1 978214 978351 42 + . . scaffold301 TRF Tandem_Repeat 983632 983669 76 + . . scaffold301 GLEAN mRNA 990250 994945 0.702966 - . ID=CGI_10026738; scaffold301 GLEAN promoter 994946 995945 0.702966 - . ID=CGI_10026738; scaffold301 TRF Tandem_Repeat 1002713 1002756 88 + . . scaffold301 TRF Tandem_Repeat 1016431 1016479 98 + . . scaffold301 GLEAN mRNA 1024284 1032212 1 - . ID=CGI_10026739; scaffold301 TRF Tandem_Repeat 1029505 1029624 168 + . . scaffold301 TRF Tandem_Repeat 1032024 1032070 85 + . . scaffold301 GLEAN promoter 1032213 1033212 1 - . ID=CGI_10026739; scaffold301 TRF Tandem_Repeat 1034772 1034850 158 + . . scaffold301 GLEAN mRNA 1044414 1045175 0.983149 - . ID=CGI_10026740; scaffold301 GLEAN promoter 1045176 1046175 0.983149 - . ID=CGI_10026740; scaffold301 TRF Tandem_Repeat 1049375 1049647 510 + . . scaffold301 WUBlastX DNA_TcMar-Fot1 1061309 1063090 770 + . . scaffold301 GLEAN mRNA 1064454 1064612 0.618218 - . ID=CGI_10026741; scaffold301 GLEAN promoter 1064613 1065612 0.618218 - . ID=CGI_10026741; scaffold301 TRF Tandem_Repeat 1064670 1064786 188 + . . scaffold301 TRF Tandem_Repeat 1064713 1064774 50 + . . scaffold301 GLEAN mRNA 1065289 1066749 0.531613 - . ID=CGI_10026742; scaffold301 GLEAN promoter 1066750 1067749 0.531613 - . ID=CGI_10026742; scaffold301 TRF Tandem_Repeat 1069805 1069834 60 + . . scaffold301 WUBlastX LINE_CR1 1073771 1073878 21 - . . scaffold301 WUBlastX LINE_CR1 1074769 1075131 95 - . . scaffold301 WUBlastX LINE_CR1 1074920 1075783 309 - . . scaffold301 WUBlastX LINE_CR1 1075076 1075792 390 - . . scaffold301 WUBlastX LINE_CR1 1075770 1075961 71 - . . scaffold301 WUBlastX LINE_CR1 1075770 1075922 74 - . . scaffold301 WUBlastX LINE_CR1 1076247 1076423 21 - . . scaffold301 WUBlastX LINE_CR1 1076410 1076571 48 - . . scaffold301 WUBlastX LINE_CR1 1076422 1076622 32 - . . scaffold301 TRF Tandem_Repeat 1078418 1078457 80 + . . scaffold301 TRF Tandem_Repeat 1078457 1078482 52 + . . scaffold301 WUBlastX LINE_L1 1079136 1080632 210 + . . scaffold301 WUBlastX LINE_L1 1079658 1080596 277 + . . scaffold301 WUBlastX LINE_L1-Tx1 1079841 1080632 483 + . . scaffold301 WUBlastX LINE_L1-Tx1 1079898 1080824 65 + . . scaffold301 TRF Tandem_Repeat 1084319 1084358 80 + . . scaffold301 GLEAN mRNA 1084555 1092328 1 - . ID=CGI_10026743; scaffold301 TRF Tandem_Repeat 1086542 1086867 512 + . . scaffold301 GLEAN promoter 1092329 1093328 1 - . ID=CGI_10026743; scaffold301 TRF Tandem_Repeat 1092542 1092620 122 + . . scaffold301 TRF Tandem_Repeat 1093488 1093545 64 + . . scaffold301 TRF Tandem_Repeat 1093493 1093541 57 + . . scaffold301 TRF Tandem_Repeat 1097856 1097904 98 + . . scaffold301 TRF Tandem_Repeat 1101035 1101073 78 + . . scaffold301 TRF Tandem_Repeat 1115360 1115390 62 + . . scaffold301 TRF Tandem_Repeat 1123879 1123909 62 + . . scaffold301 TRF Tandem_Repeat 1125662 1125709 96 + . . scaffold301 GLEAN mRNA 1125795 1126996 0.994279 - . ID=CGI_10026744; scaffold301 TRF Tandem_Repeat 1126021 1126089 129 + . . scaffold301 GLEAN promoter 1126997 1127996 0.994279 - . ID=CGI_10026744; scaffold301 GLEAN promoter 1130683 1131682 0.618241 + . ID=CGI_10026745; scaffold301 GLEAN mRNA 1131683 1131994 0.618241 + . ID=CGI_10026745; scaffold301 TRF Tandem_Repeat 1132467 1132493 54 + . . scaffold301 TRF Tandem_Repeat 1133764 1133884 101 + . . scaffold301 TRF Tandem_Repeat 1134021 1134241 171 + . . scaffold301 TRF Tandem_Repeat 1134051 1134236 120 + . . scaffold301 WUBlastX DNA_TcMar-Marin 1136416 1136643 31 - . . scaffold301 WUBlastX DNA_TcMar-Marin 1136630 1136812 40 - . . scaffold301 WUBlastX DNA_TcMar-Marin 1136684 1136809 52 - . . scaffold301 GLEAN mRNA 1140679 1140945 0.776598 - . ID=CGI_10026746; scaffold301 GLEAN promoter 1140946 1141945 0.776598 - . ID=CGI_10026746; scaffold301 WUBlastX LTR_Gypsy 1141771 1142112 47 - . . scaffold301 WUBlastX LTR_Gypsy-Cigr 1141825 1142112 86 - . . scaffold301 GLEAN mRNA 1141876 1142190 0.998748 - . ID=CGI_10026747; scaffold301 GLEAN promoter 1142191 1143190 0.998748 - . ID=CGI_10026747; scaffold301 GLEAN mRNA 1150635 1157686 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1151695 1152015 383 + . . scaffold301 TRF Tandem_Repeat 1151696 1152022 431 + . . scaffold301 TRF Tandem_Repeat 1153133 1153321 147 + . . scaffold301 TRF Tandem_Repeat 1153137 1153303 163 + . . scaffold301 TRF Tandem_Repeat 1153137 1153378 124 + . . scaffold301 TRF Tandem_Repeat 1153391 1153820 274 + . . scaffold301 TRF Tandem_Repeat 1153391 1153820 312 + . . scaffold301 TRF Tandem_Repeat 1153391 1153672 309 + . . scaffold301 TRF Tandem_Repeat 1153422 1153792 138 + . . scaffold301 TRF Tandem_Repeat 1153697 1153813 99 + . . scaffold301 TRF Tandem_Repeat 1153917 1154090 228 + . . scaffold301 GLEAN promoter 1157687 1158686 0.650896 - . ID=CGI_10026748; scaffold301 TRF Tandem_Repeat 1159458 1159513 112 + . . scaffold301 GLEAN mRNA 1168845 1180395 0.999501 - . ID=CGI_10026750; scaffold301 TRF Tandem_Repeat 1175972 1176016 90 + . . scaffold301 GLEAN promoter 1180396 1181395 0.999501 - . ID=CGI_10026750; scaffold301 TRF Tandem_Repeat 1180718 1180772 110 + . . scaffold301 GLEAN mRNA 1182856 1204331 0.776617 - . ID=CGI_10026751; scaffold301 TRF Tandem_Repeat 1189205 1189340 163 + . . scaffold301 TRF Tandem_Repeat 1189588 1189666 142 + . . scaffold301 TRF Tandem_Repeat 1189753 1189784 55 + . . scaffold301 TRF Tandem_Repeat 1190527 1190608 103 + . . scaffold301 GLEAN promoter 1204332 1205331 0.776617 - . ID=CGI_10026751; scaffold301 GLEAN mRNA 1204352 1204771 0.502898 - . ID=CGI_10026752; scaffold301 GLEAN promoter 1204772 1205771 0.502898 - . ID=CGI_10026752; scaffold301 TRF Tandem_Repeat 1210034 1210058 50 + . . scaffold301 TRF Tandem_Repeat 1210060 1210086 54 + . . scaffold301 TRF Tandem_Repeat 1212038 1212492 597 + . . scaffold301 TRF Tandem_Repeat 1212499 1212801 318 + . . scaffold301 TRF Tandem_Repeat 1216387 1216425 78 + . . scaffold30150 GLEAN mRNA 5155 6495 0.965913 - . ID=CGI_10000601; scaffold30150 GLEAN promoter 6496 7484 0.965913 - . ID=CGI_10000601; scaffold302 GLEAN promoter 1 297 0.996819 + . ID=CGI_10002889; scaffold302 GLEAN mRNA 298 825 0.996819 + . ID=CGI_10002889; scaffold302 GLEAN promoter 3952 4951 0.733291 + . ID=CGI_10002890; scaffold302 GLEAN mRNA 4952 9731 0.733291 + . ID=CGI_10002890; scaffold302 TRF Tandem_Repeat 7694 7749 112 + . . scaffold302 GLEAN mRNA 9966 10442 0.979489 - . ID=CGI_10002891; scaffold302 GLEAN promoter 10443 11442 0.979489 - . ID=CGI_10002891; scaffold302 WUBlastX LTR_ERV1 10935 11309 28 - . . scaffold302 GLEAN promoter 21275 22274 1 + . ID=CGI_10002892; scaffold302 GLEAN mRNA 22275 26010 1 + . ID=CGI_10002892; scaffold302 GLEAN mRNA 28427 42099 0.777732 - . ID=CGI_10002893; scaffold302 GLEAN promoter 29478 30477 0.999502 + . ID=CGI_10002894; scaffold302 GLEAN mRNA 30478 43580 0.999502 + . ID=CGI_10002894; scaffold302 GLEAN promoter 42100 43099 0.777732 - . ID=CGI_10002893; scaffold302 GLEAN promoter 43237 44236 0.777732 + . ID=CGI_10002895; scaffold302 GLEAN mRNA 44237 44716 0.777732 + . ID=CGI_10002895; scaffold302 GLEAN mRNA 47611 58406 1 - . ID=CGI_10002896; scaffold302 GLEAN promoter 58407 59048 1 - . ID=CGI_10002896; scaffold30212 GLEAN mRNA 933 6567 0.999375 - . ID=CGI_10000581; scaffold30212 GLEAN promoter 6568 7242 0.999375 - . ID=CGI_10000581; scaffold303 GLEAN promoter 3271 4270 0.240297 + . ID=CGI_10000967; scaffold303 GLEAN mRNA 4271 12048 0.240297 + . ID=CGI_10000967; scaffold30304 GLEAN mRNA 397 4687 0.926438 - . ID=CGI_10000623; scaffold30304 GLEAN promoter 4688 5687 0.926438 - . ID=CGI_10000623; scaffold30314 TRF Tandem_Repeat 48 95 89 + . . scaffold30314 WUBlastX LINE_RTE-X 2164 3453 185 - . . scaffold30314 WUBlastX LINE_RTE-X 2632 3453 403 - . . scaffold30314 WUBlastX LINE_RTE-X 3996 4976 113 - . . scaffold30348 GLEAN mRNA 3714 5670 1 - . ID=CGI_10000610; scaffold30348 GLEAN promoter 5671 6670 1 - . ID=CGI_10000610; scaffold304 GLEAN mRNA 162 8428 0.857353 - . ID=CGI_10016549; scaffold304 GLEAN promoter 8429 9428 0.857353 - . ID=CGI_10016549; scaffold304 TRF Tandem_Repeat 24703 24732 60 + . . scaffold304 TRF Tandem_Repeat 27844 27878 70 + . . scaffold304 TRF Tandem_Repeat 34006 34077 137 + . . scaffold304 TRF Tandem_Repeat 56927 57887 1371 + . . scaffold304 TRF Tandem_Repeat 60073 60097 50 + . . scaffold304 TRF Tandem_Repeat 79128 79812 991 + . . scaffold304 WUBlastX LTR_Gypsy 80525 80569 20 + . . scaffold304 WUBlastX LTR_Gypsy 80563 81039 115 + . . scaffold304 WUBlastX LTR_Gypsy-Cigr 80635 81306 65 + . . scaffold304 WUBlastX LTR_Gypsy 81456 81506 22 + . . scaffold304 WUBlastX LTR_Gypsy 81474 81701 49 + . . scaffold304 WUBlastX LTR_Gypsy 81579 81761 44 + . . scaffold304 WUBlastX LTR_Gypsy-Cigr 81758 81922 40 + . . scaffold304 WUBlastX LTR_Gypsy 81868 82182 50 + . . scaffold304 WUBlastX LTR_Gypsy 81940 82188 95 + . . scaffold304 WUBlastX LTR_Gypsy 82000 83040 250 + . . scaffold304 WUBlastX LTR_Gypsy 82354 83055 393 + . . scaffold304 WUBlastX LTR_Gypsy 83033 83773 208 + . . scaffold304 WUBlastX LTR_Gypsy 83045 83644 333 + . . scaffold304 GLEAN promoter 98360 99359 0.999366 + . ID=CGI_10016550; scaffold304 WUBlastX DNA_Kolobok-IS4 99048 99578 69 + . . scaffold304 GLEAN mRNA 99360 99893 0.999366 + . ID=CGI_10016550; scaffold304 GLEAN promoter 112122 113121 0.618241 + . ID=CGI_10016551; scaffold304 GLEAN mRNA 113122 113670 0.618241 + . ID=CGI_10016551; scaffold304 WUBlastX LTR_DIRS 121005 121931 313 - . . scaffold304 WUBlastX LTR_DIRS 121817 122020 83 - . . scaffold304 WUBlastX LTR_DIRS 121964 122038 40 - . . scaffold304 WUBlastX LTR_DIRS 122035 122724 443 - . . scaffold304 WUBlastX LTR_DIRS 122670 123248 385 - . . scaffold304 WUBlastX LTR_DIRS 123497 123994 77 - . . scaffold304 WUBlastX LTR_Copia 125145 125264 24 - . . scaffold304 WUBlastX LTR_Gypsy 125571 126731 960 - . . scaffold304 TRF Tandem_Repeat 140962 140999 58 + . . scaffold304 GLEAN mRNA 147715 155032 0.999344 - . ID=CGI_10016552; scaffold304 WUBlastX LTR_ERV1 153343 153627 39 - . . scaffold304 GLEAN promoter 155033 156032 0.999344 - . ID=CGI_10016552; scaffold304 GLEAN mRNA 155568 160423 0.999999 - . ID=CGI_10016553; scaffold304 GLEAN promoter 160424 161423 0.999999 - . ID=CGI_10016553; scaffold304 TRF Tandem_Repeat 164205 164253 98 + . . scaffold304 WUBlastX DNA_Sola 170681 171316 167 + . . scaffold304 WUBlastX DNA_Sola 170717 171217 184 + . . scaffold304 TRF Tandem_Repeat 171549 171574 52 + . . scaffold304 WUBlastX DNA_Sola 171618 171761 34 + . . scaffold304 WUBlastX DNA_Sola 171645 171887 46 + . . scaffold304 GLEAN mRNA 174444 182603 1 - . ID=CGI_10016555; scaffold304 TRF Tandem_Repeat 176843 176878 63 + . . scaffold304 GLEAN promoter 182604 183603 1 - . ID=CGI_10016555; scaffold304 TRF Tandem_Repeat 183009 183142 106 + . . scaffold304 GLEAN promoter 185196 186195 0.686393 + . ID=CGI_10016556; scaffold304 GLEAN mRNA 186196 198947 0.686393 + . ID=CGI_10016556; scaffold304 TRF Tandem_Repeat 194702 195161 832 + . . scaffold304 GLEAN mRNA 201132 201743 0.6496 - . ID=CGI_10016558; scaffold304 GLEAN promoter 201744 202743 0.6496 - . ID=CGI_10016558; scaffold304 TRF Tandem_Repeat 203580 203615 72 + . . scaffold304 GLEAN mRNA 205839 207706 1 - . ID=CGI_10016559; scaffold304 GLEAN promoter 207707 208706 1 - . ID=CGI_10016559; scaffold304 GLEAN mRNA 209765 210409 0.999323 - . ID=CGI_10016560; scaffold304 GLEAN promoter 210410 211409 0.999323 - . ID=CGI_10016560; scaffold304 GLEAN mRNA 218475 219098 0.998388 - . ID=CGI_10016561; scaffold304 GLEAN promoter 219099 220098 0.998388 - . ID=CGI_10016561; scaffold304 GLEAN mRNA 236762 237268 0.497522 - . ID=CGI_10016562; scaffold304 GLEAN promoter 237269 238268 0.497522 - . ID=CGI_10016562; scaffold304 GLEAN mRNA 246361 259150 0.999945 - . ID=CGI_10016563; scaffold304 TRF Tandem_Repeat 251635 251879 187 + . . scaffold304 GLEAN promoter 259151 260150 0.999945 - . ID=CGI_10016563; scaffold304 TRF Tandem_Repeat 264890 264956 134 + . . scaffold304 TRF Tandem_Repeat 265003 265031 58 + . . scaffold304 GLEAN mRNA 270383 281891 0.992187 - . ID=CGI_10016565; scaffold304 GLEAN promoter 281892 282891 0.992187 - . ID=CGI_10016565; scaffold304 TRF Tandem_Repeat 283605 283656 104 + . . scaffold304 TRF Tandem_Repeat 284430 284479 75 + . . scaffold304 TRF Tandem_Repeat 284430 284479 66 + . . scaffold304 TRF Tandem_Repeat 291986 292024 78 + . . scaffold304 TRF Tandem_Repeat 323238 323286 55 + . . scaffold304 GLEAN mRNA 327782 339627 0.999019 - . ID=CGI_10016567; scaffold304 WUBlastX LINE_RTE-BovB 329100 329300 88 - . . scaffold304 WUBlastX LTR_Ngaro 333932 334354 74 + . . scaffold304 WUBlastX LTR_Ngaro 334073 334357 116 + . . scaffold304 TRF Tandem_Repeat 335057 335187 149 + . . scaffold304 WUBlastX LINE_L1 335427 335600 81 + . . scaffold304 GLEAN promoter 339628 340627 0.999019 - . ID=CGI_10016567; scaffold304 WUBlastX LINE_CR1 352279 352416 58 - . . scaffold304 WUBlastX LINE_CR1 352386 352553 71 - . . scaffold304 WUBlastX LINE_CR1 355274 356803 1127 - . . scaffold304 WUBlastX LINE_L2 355673 357013 431 - . . scaffold304 WUBlastX LINE_CR1 356977 357156 48 - . . scaffold304 WUBlastX LINE_CR1 357159 357350 76 - . . scaffold304 WUBlastX LINE_CR1 357171 357506 41 - . . scaffold304 WUBlastX LINE_CR1 357195 357422 59 - . . scaffold304 TRF Tandem_Repeat 364561 364972 494 + . . scaffold304 TRF Tandem_Repeat 364561 364972 482 + . . scaffold304 TRF Tandem_Repeat 364561 364972 430 + . . scaffold304 GLEAN promoter 367810 368809 1 + . ID=CGI_10016568; scaffold304 GLEAN mRNA 368810 373394 1 + . ID=CGI_10016568; scaffold304 TRF Tandem_Repeat 378779 378831 78 + . . scaffold304 TRF Tandem_Repeat 383239 383280 59 + . . scaffold304 TRF Tandem_Repeat 383500 383541 59 + . . scaffold304 TRF Tandem_Repeat 383714 384856 1975 + . . scaffold304 TRF Tandem_Repeat 390421 390484 94 + . . scaffold304 TRF Tandem_Repeat 394634 394660 54 + . . scaffold304 TRF Tandem_Repeat 394663 394714 95 + . . scaffold304 GLEAN promoter 395206 396205 0.987296 + . ID=CGI_10016569; scaffold304 GLEAN mRNA 396206 402538 0.987296 + . ID=CGI_10016569; scaffold304 TRF Tandem_Repeat 399321 399382 124 + . . scaffold304 TRF Tandem_Repeat 399533 399576 52 + . . scaffold304 TRF Tandem_Repeat 399541 399577 65 + . . scaffold304 TRF Tandem_Repeat 399841 399988 145 + . . scaffold304 TRF Tandem_Repeat 399850 399992 124 + . . scaffold304 GLEAN promoter 405512 406511 0.988081 + . ID=CGI_10016570; scaffold304 GLEAN mRNA 406512 432838 0.988081 + . ID=CGI_10016570; scaffold304 TRF Tandem_Repeat 425810 425876 134 + . . scaffold304 TRF Tandem_Repeat 430428 430484 114 + . . scaffold304 GLEAN mRNA 432246 450189 0.989519 - . ID=CGI_10016571; scaffold304 TRF Tandem_Repeat 444327 444385 118 + . . scaffold304 TRF Tandem_Repeat 444395 444447 106 + . . scaffold304 GLEAN promoter 450190 451189 0.989519 - . ID=CGI_10016571; scaffold30462 GLEAN mRNA 2071 6230 1 - . ID=CGI_10000626; scaffold30462 GLEAN promoter 6231 7230 1 - . ID=CGI_10000626; scaffold305 GLEAN promoter 1 225 0.539942 + . ID=CGI_10019108; scaffold305 GLEAN mRNA 226 3248 0.539942 + . ID=CGI_10019108; scaffold305 TRF Tandem_Repeat 2167 2655 691 + . . scaffold305 GLEAN promoter 5880 6879 1 + . ID=CGI_10019109; scaffold305 GLEAN mRNA 6880 8634 1 + . ID=CGI_10019109; scaffold305 GLEAN mRNA 11482 30055 0.998504 - . ID=CGI_10019110; scaffold305 GLEAN promoter 28890 29889 0.809608 + . ID=CGI_10019111; scaffold305 GLEAN mRNA 29890 32350 0.809608 + . ID=CGI_10019111; scaffold305 GLEAN promoter 30056 31055 0.998504 - . ID=CGI_10019110; scaffold305 TRF Tandem_Repeat 32716 33782 1228 + . . scaffold305 TRF Tandem_Repeat 34637 34674 76 + . . scaffold305 GLEAN mRNA 36185 38516 0.896803 - . ID=CGI_10019112; scaffold305 WUBlastX LINE_RTE-X 36708 37079 120 + . . scaffold305 TRF Tandem_Repeat 37108 37167 57 + . . scaffold305 GLEAN promoter 38517 39516 0.896803 - . ID=CGI_10019112; scaffold305 GLEAN promoter 41065 42064 0.944477 + . ID=CGI_10019113; scaffold305 GLEAN mRNA 42065 48590 0.944477 + . ID=CGI_10019113; scaffold305 TRF Tandem_Repeat 45223 45258 72 + . . scaffold305 GLEAN promoter 47834 48833 0.991493 + . ID=CGI_10019114; scaffold305 TRF Tandem_Repeat 48713 48794 128 + . . scaffold305 GLEAN mRNA 48834 53144 0.991493 + . ID=CGI_10019114; scaffold305 GLEAN mRNA 60762 60971 1 - . ID=CGI_10019115; scaffold305 GLEAN promoter 60972 61971 1 - . ID=CGI_10019115; scaffold305 TRF Tandem_Repeat 67296 67339 70 + . . scaffold305 TRF Tandem_Repeat 72339 72402 128 + . . scaffold305 TRF Tandem_Repeat 72783 72833 68 + . . scaffold305 TRF Tandem_Repeat 85982 86069 113 + . . scaffold305 TRF Tandem_Repeat 86020 86122 55 + . . scaffold305 WUBlastX LINE_RTE-BovB 91696 92331 78 + . . scaffold305 WUBlastX LINE_RTE-X 91807 92898 363 + . . scaffold305 WUBlastX LINE_RTE-X 92924 93139 62 + . . scaffold305 WUBlastX LINE_RTE-X 93147 93401 26 + . . scaffold305 GLEAN promoter 93388 94387 0.999055 + . ID=CGI_10019116; scaffold305 GLEAN mRNA 94388 110060 0.999055 + . ID=CGI_10019116; scaffold305 WUBlastX LINE_Penelope 113296 113523 43 - . . scaffold305 GLEAN mRNA 114232 133246 0.986225 - . ID=CGI_10019117; scaffold305 TRF Tandem_Repeat 117899 118017 102 + . . scaffold305 WUBlastX LTR_Gypsy 124168 128310 2394 - . . scaffold305 WUBlastX LTR_Gypsy 124324 127791 2459 - . . scaffold305 WUBlastX LTR_Gypsy-Cigr 128397 129095 202 - . . scaffold305 WUBlastX LTR_Gypsy 129091 129255 28 - . . scaffold305 TRF Tandem_Repeat 132058 132120 126 + . . scaffold305 GLEAN promoter 133247 134246 0.986225 - . ID=CGI_10019117; scaffold305 GLEAN mRNA 133464 157357 0.544675 - . ID=CGI_10019118; scaffold305 TRF Tandem_Repeat 134353 134378 52 + . . scaffold305 WUBlastX LINE_L1-Tx1 138909 139559 97 + . . scaffold305 WUBlastX LINE_L1-Tx1 139200 140600 160 + . . scaffold305 WUBlastX LINE_L1 139902 140642 263 + . . scaffold305 WUBlastX LINE_L1 140641 140901 74 + . . scaffold305 WUBlastX LINE_L1 140647 140859 92 + . . scaffold305 WUBlastX LINE_L1 140867 141076 47 + . . scaffold305 WUBlastX LINE_L1-Tx1 141235 141339 24 + . . scaffold305 WUBlastX LINE_L1 141519 141689 22 + . . scaffold305 WUBlastX LINE_Penelope 143065 143682 69 - . . scaffold305 GLEAN promoter 157358 158357 0.544675 - . ID=CGI_10019118; scaffold305 WUBlastX LINE_L1-Tx1 166757 167074 22 + . . scaffold305 WUBlastX LINE_L1-Tx1 166841 167062 23 + . . scaffold305 GLEAN mRNA 172174 179381 0.995798 - . ID=CGI_10019119; scaffold305 TRF Tandem_Repeat 173919 173960 66 + . . scaffold305 WUBlastX DNA_hAT-Tip100 177534 178436 480 - . . scaffold305 WUBlastX DNA_hAT-Tip100 178439 178552 21 - . . scaffold305 WUBlastX DNA_hAT-Tip100 178540 178824 67 - . . scaffold305 WUBlastX DNA_hAT-Tip100 178543 178758 119 - . . scaffold305 WUBlastX DNA_hAT-Tip100 178543 178896 21 - . . scaffold305 GLEAN promoter 179382 180381 0.995798 - . ID=CGI_10019119; scaffold305 GLEAN mRNA 179994 183618 0.924408 - . ID=CGI_10019120; scaffold305 GLEAN promoter 183619 184618 0.924408 - . ID=CGI_10019120; scaffold305 WUBlastX LINE_L1 188327 188863 117 - . . scaffold305 TRF Tandem_Repeat 192842 193795 1253 + . . scaffold305 TRF Tandem_Repeat 192842 193795 1379 + . . scaffold305 WUBlastX LINE_L1-Tx1 193967 194071 22 - . . scaffold305 WUBlastX LINE_L1-Tx1 194094 194363 84 - . . scaffold305 WUBlastX LINE_L2 194124 194549 65 - . . scaffold305 WUBlastX LINE_L2 194136 194414 97 - . . scaffold305 GLEAN promoter 199283 200282 1 + . ID=CGI_10019121; scaffold305 GLEAN mRNA 200283 200675 1 + . ID=CGI_10019121; scaffold305 TRF Tandem_Repeat 214796 215013 310 + . . scaffold305 WUBlastX DNA_TcMar-Marin 215108 215338 45 + . . scaffold305 TRF Tandem_Repeat 215704 215924 426 + . . scaffold305 TRF Tandem_Repeat 217981 218026 92 + . . scaffold305 GLEAN promoter 219848 220847 0.33306 + . ID=CGI_10019122; scaffold305 GLEAN mRNA 220848 235392 0.33306 + . ID=CGI_10019122; scaffold305 TRF Tandem_Repeat 230674 231050 431 + . . scaffold305 TRF Tandem_Repeat 230678 231044 471 + . . scaffold305 TRF Tandem_Repeat 231861 232030 182 + . . scaffold305 GLEAN promoter 234582 235581 0.557307 + . ID=CGI_10019123; scaffold305 TRF Tandem_Repeat 234692 235332 985 + . . scaffold305 GLEAN mRNA 235582 249919 0.557307 + . ID=CGI_10019123; scaffold305 TRF Tandem_Repeat 236762 237862 2121 + . . scaffold305 TRF Tandem_Repeat 244008 244351 620 + . . scaffold305 TRF Tandem_Repeat 247782 248077 529 + . . scaffold305 GLEAN promoter 249174 250173 0.912097 + . ID=CGI_10019124; scaffold305 GLEAN mRNA 250174 258948 0.912097 + . ID=CGI_10019124; scaffold305 WUBlastX LINE_RTE-X 257508 257867 75 + . . scaffold305 WUBlastX LINE_RTE-X 257508 257939 49 + . . scaffold305 WUBlastX LINE_RTE-X 257523 257807 112 + . . scaffold305 GLEAN mRNA 259205 261155 0.999186 - . ID=CGI_10019125; scaffold305 GLEAN promoter 261156 262155 0.999186 - . ID=CGI_10019125; scaffold305 TRF Tandem_Repeat 261484 261545 63 + . . scaffold305 TRF Tandem_Repeat 261485 261545 79 + . . scaffold305 GLEAN mRNA 263487 271556 1 - . ID=CGI_10019126; scaffold305 GLEAN promoter 271557 272556 1 - . ID=CGI_10019126; scaffold305 TRF Tandem_Repeat 273334 275129 2257 + . . scaffold305 GLEAN mRNA 275185 294487 0.987924 - . ID=CGI_10019127; scaffold305 TRF Tandem_Repeat 275866 276011 163 + . . scaffold305 TRF Tandem_Repeat 275881 276001 188 + . . scaffold305 TRF Tandem_Repeat 277183 277224 84 + . . scaffold305 TRF Tandem_Repeat 278745 278846 152 + . . scaffold305 TRF Tandem_Repeat 278755 278862 111 + . . scaffold305 TRF Tandem_Repeat 282369 282475 88 + . . scaffold305 GLEAN promoter 293997 294996 1 + . ID=CGI_10019128; scaffold305 GLEAN promoter 294488 295487 0.987924 - . ID=CGI_10019127; scaffold305 GLEAN mRNA 294997 301346 1 + . ID=CGI_10019128; scaffold305 GLEAN mRNA 310539 318181 1 - . ID=CGI_10019129; scaffold305 GLEAN promoter 318182 319181 1 - . ID=CGI_10019129; scaffold305 GLEAN mRNA 318389 321014 0.800661 - . ID=CGI_10019130; scaffold305 GLEAN promoter 321015 322014 0.800661 - . ID=CGI_10019130; scaffold305 GLEAN mRNA 321041 327344 0.796708 - . ID=CGI_10019131; scaffold305 TRF Tandem_Repeat 325026 325114 171 + . . scaffold305 GLEAN promoter 327218 328217 0.762281 + . ID=CGI_10019132; scaffold305 GLEAN promoter 327345 328344 0.796708 - . ID=CGI_10019131; scaffold305 GLEAN mRNA 328218 359699 0.762281 + . ID=CGI_10019132; scaffold305 TRF Tandem_Repeat 329726 330068 400 + . . scaffold305 TRF Tandem_Repeat 329726 330068 361 + . . scaffold305 TRF Tandem_Repeat 329874 330048 171 + . . scaffold305 TRF Tandem_Repeat 335073 335499 510 + . . scaffold305 TRF Tandem_Repeat 352047 352269 439 + . . scaffold305 TRF Tandem_Repeat 353659 353724 60 + . . scaffold305 TRF Tandem_Repeat 354612 354676 94 + . . scaffold305 TRF Tandem_Repeat 355567 355725 158 + . . scaffold305 TRF Tandem_Repeat 356493 357975 2570 + . . scaffold305 TRF Tandem_Repeat 365327 365676 380 + . . scaffold305 TRF Tandem_Repeat 365327 365692 327 + . . scaffold305 TRF Tandem_Repeat 365876 366153 304 + . . scaffold305 GLEAN mRNA 367180 369673 0.999547 - . ID=CGI_10019133; scaffold305 GLEAN promoter 369674 370673 0.999547 - . ID=CGI_10019133; scaffold305 TRF Tandem_Repeat 369716 369895 152 + . . scaffold305 TRF Tandem_Repeat 369845 370130 192 + . . scaffold305 TRF Tandem_Repeat 369894 370479 911 + . . scaffold305 TRF Tandem_Repeat 370176 370263 54 + . . scaffold305 TRF Tandem_Repeat 370190 370274 69 + . . scaffold305 GLEAN mRNA 371312 371854 1 - . ID=CGI_10019134; scaffold305 GLEAN promoter 371855 372854 1 - . ID=CGI_10019134; scaffold305 GLEAN promoter 373245 374244 0.999675 + . ID=CGI_10019135; scaffold305 GLEAN mRNA 374245 383696 0.999675 + . ID=CGI_10019135; scaffold305 TRF Tandem_Repeat 375595 375652 107 + . . scaffold305 TRF Tandem_Repeat 384584 385062 632 + . . scaffold305 TRF Tandem_Repeat 386167 386389 419 + . . scaffold305 GLEAN mRNA 388626 400736 0.455562 - . ID=CGI_10019136; scaffold305 TRF Tandem_Repeat 395168 395194 54 + . . scaffold305 GLEAN promoter 396470 397469 0.716146 + . ID=CGI_10019137; scaffold305 GLEAN mRNA 397470 401544 0.716146 + . ID=CGI_10019137; scaffold305 GLEAN promoter 400737 401736 0.455562 - . ID=CGI_10019136; scaffold305 GLEAN promoter 401997 402996 0.999999 + . ID=CGI_10019138; scaffold305 GLEAN mRNA 402997 414880 0.999999 + . ID=CGI_10019138; scaffold305 TRF Tandem_Repeat 412444 412760 338 + . . scaffold305 TRF Tandem_Repeat 415101 415134 68 + . . scaffold305 GLEAN mRNA 417939 422789 1 - . ID=CGI_10019139; scaffold305 TRF Tandem_Repeat 418823 418858 72 + . . scaffold305 TRF Tandem_Repeat 420890 420928 78 + . . scaffold305 GLEAN promoter 422790 423789 1 - . ID=CGI_10019139; scaffold305 TRF Tandem_Repeat 424084 424110 54 + . . scaffold305 WUBlastX DNA_TcMar-Fot1 424581 426278 402 - . . scaffold305 WUBlastX DNA_TcMar-Fot1 424989 426293 714 - . . scaffold305 TRF Tandem_Repeat 426842 426878 74 + . . scaffold305 TRF Tandem_Repeat 429416 429457 84 + . . scaffold305 TRF Tandem_Repeat 430183 430208 52 + . . scaffold305 TRF Tandem_Repeat 436105 436143 78 + . . scaffold305 GLEAN mRNA 436325 448362 0.78661 - . ID=CGI_10019140; scaffold305 WUBlastX DNA_MuDR 440183 440494 43 - . . scaffold305 WUBlastX DNA_NOF 443253 443354 23 + . . scaffold305 TRF Tandem_Repeat 445064 445090 54 + . . scaffold305 GLEAN promoter 448363 449362 0.78661 - . ID=CGI_10019140; scaffold305 GLEAN promoter 448845 449844 0.999234 + . ID=CGI_10019141; scaffold305 GLEAN mRNA 449845 466663 0.999234 + . ID=CGI_10019141; scaffold305 TRF Tandem_Repeat 453477 453522 92 + . . scaffold305 TRF Tandem_Repeat 460676 460709 68 + . . scaffold305 WUBlastX LINE_L1 463758 464045 20 - . . scaffold305 WUBlastX LINE_L1-Tx1 464358 465029 76 - . . scaffold305 WUBlastX LINE_L1-Tx1 464703 465023 134 - . . scaffold305 WUBlastX LINE_L1-Tx1 464990 466078 520 - . . scaffold305 TRF Tandem_Repeat 466389 466441 99 + . . scaffold305 TRF Tandem_Repeat 467904 467939 56 + . . scaffold305 GLEAN promoter 472703 473702 1 + . ID=CGI_10019142; scaffold305 GLEAN mRNA 473703 489513 1 + . ID=CGI_10019142; scaffold305 TRF Tandem_Repeat 490492 490524 66 + . . scaffold305 TRF Tandem_Repeat 492890 492929 80 + . . scaffold305 GLEAN mRNA 493930 495961 0.889922 - . ID=CGI_10019143; scaffold305 GLEAN promoter 495962 496961 0.889922 - . ID=CGI_10019143; scaffold305 GLEAN mRNA 500230 504356 0.999661 - . ID=CGI_10019144; scaffold305 GLEAN promoter 504357 505356 0.999661 - . ID=CGI_10019144; scaffold305 GLEAN promoter 505916 506915 0.999612 + . ID=CGI_10019145; scaffold305 GLEAN mRNA 506916 512811 0.999612 + . ID=CGI_10019145; scaffold305 GLEAN mRNA 513670 520927 0.837081 - . ID=CGI_10019146; scaffold305 WUBlastX DNA_hAT 513958 515334 319 - . . scaffold305 GLEAN promoter 520928 521927 0.837081 - . ID=CGI_10019146; scaffold305 GLEAN mRNA 525681 530224 1 - . ID=CGI_10019147; scaffold305 GLEAN promoter 530225 531224 1 - . ID=CGI_10019147; scaffold305 GLEAN promoter 530486 531485 0.999998 + . ID=CGI_10019148; scaffold305 GLEAN mRNA 531486 532694 0.999998 + . ID=CGI_10019148; scaffold305 GLEAN promoter 533771 534770 0.800351 + . ID=CGI_10019149; scaffold305 GLEAN mRNA 534771 539672 0.800351 + . ID=CGI_10019149; scaffold305 TRF Tandem_Repeat 545196 545222 54 + . . scaffold305 WUBlastX LINE_L1-Tx1 564634 564993 20 + . . scaffold305 TRF Tandem_Repeat 570403 570446 88 + . . scaffold30556 GLEAN promoter 3523 4522 1 + . ID=CGI_10000633; scaffold30556 GLEAN mRNA 4523 5596 1 + . ID=CGI_10000633; scaffold30596 GLEAN mRNA 1664 5526 1 - . ID=CGI_10000640; scaffold30596 GLEAN promoter 5527 6526 1 - . ID=CGI_10000640; scaffold30598 GLEAN mRNA 1283 1582 0.558346 - . ID=CGI_10000641; scaffold30598 GLEAN promoter 1583 2582 0.558346 - . ID=CGI_10000641; scaffold30598 GLEAN mRNA 1727 2738 0.427708 - . ID=CGI_10000642; scaffold30598 GLEAN promoter 2739 3738 0.427708 - . ID=CGI_10000642; scaffold30610 WUBlastX DNA_TcMar-Tc1 15 896 336 - . . scaffold30610 TRF Tandem_Repeat 1466 1508 86 + . . scaffold30658 GLEAN mRNA 2349 2579 0.649524 - . ID=CGI_10000648; scaffold30658 GLEAN promoter 2580 3579 0.649524 - . ID=CGI_10000648; scaffold30672 GLEAN promoter 1 722 0.999993 + . ID=CGI_10000649; scaffold30672 GLEAN mRNA 723 7540 0.999993 + . ID=CGI_10000649; scaffold30678 WUBlastX LINE_L2 5419 5673 55 + . . scaffold30682 GLEAN mRNA 363 3344 1 - . ID=CGI_10000658; scaffold30682 WUBlastX DNA_Harbinger 1764 2015 62 - . . scaffold30682 TRF Tandem_Repeat 2625 2650 52 + . . scaffold30682 TRF Tandem_Repeat 2696 2735 80 + . . scaffold30682 WUBlastX DNA_Harbinger 3189 3341 71 - . . scaffold30682 GLEAN promoter 3345 4344 1 - . ID=CGI_10000658; scaffold307 TRF Tandem_Repeat 1 35 70 + . . scaffold307 WUBlastX LINE_CR1-L2 884 1123 34 + . . scaffold307 TRF Tandem_Repeat 4857 4884 56 + . . scaffold307 TRF Tandem_Repeat 5039 5065 54 + . . scaffold307 TRF Tandem_Repeat 11687 11758 54 + . . scaffold307 TRF Tandem_Repeat 21670 21738 131 + . . scaffold307 TRF Tandem_Repeat 40299 40338 62 + . . scaffold307 TRF Tandem_Repeat 57415 57448 68 + . . scaffold307 TRF Tandem_Repeat 57629 57664 72 + . . scaffold307 TRF Tandem_Repeat 60175 60211 65 + . . scaffold307 TRF Tandem_Repeat 65346 65382 74 + . . scaffold307 TRF Tandem_Repeat 65597 65763 201 + . . scaffold307 TRF Tandem_Repeat 66491 66723 364 + . . scaffold307 TRF Tandem_Repeat 70127 70356 266 + . . scaffold307 TRF Tandem_Repeat 70559 70601 86 + . . scaffold307 TRF Tandem_Repeat 70605 70649 90 + . . scaffold30716 WUBlastX LINE_L2 184 441 25 + . . scaffold30716 WUBlastX LINE_L2 250 441 46 + . . scaffold30716 WUBlastX LINE_L2 337 447 59 + . . scaffold30716 WUBlastX LINE_L2 361 441 66 + . . scaffold30716 WUBlastX LINE_L2 446 1363 41 + . . scaffold30716 WUBlastX LINE_L2 446 1180 167 + . . scaffold30716 TRF Tandem_Repeat 5003 5064 124 + . . scaffold30716 TRF Tandem_Repeat 5064 5096 66 + . . scaffold30718 WUBlastX DNA_TcMar-Fot1 4082 4858 58 - . . scaffold30718 WUBlastX DNA_TcMar-Fot1 4151 4804 169 - . . scaffold30774 GLEAN mRNA 1712 7618 1 - . ID=CGI_10000669; scaffold30774 GLEAN promoter 7619 8351 1 - . ID=CGI_10000669; scaffold30798 GLEAN mRNA 1757 4260 1 - . ID=CGI_10000678; scaffold30798 GLEAN promoter 4261 5260 1 - . ID=CGI_10000678; scaffold30798 GLEAN mRNA 5377 5880 0.999372 - . ID=CGI_10000679; scaffold30798 GLEAN promoter 5881 6880 0.999372 - . ID=CGI_10000679; scaffold308 TRF Tandem_Repeat 76 116 55 + . . scaffold308 GLEAN promoter 2119 3118 1 + . ID=CGI_10011002; scaffold308 GLEAN mRNA 3119 8117 1 + . ID=CGI_10011002; scaffold308 GLEAN promoter 34698 35697 0.544852 + . ID=CGI_10011003; scaffold308 GLEAN mRNA 35698 47667 0.544852 + . ID=CGI_10011003; scaffold308 GLEAN promoter 47566 48565 0.73638 + . ID=CGI_10011004; scaffold308 GLEAN mRNA 48566 59085 0.73638 + . ID=CGI_10011004; scaffold308 GLEAN mRNA 64969 69463 0.702157 - . ID=CGI_10011005; scaffold308 GLEAN promoter 69464 70463 0.702157 - . ID=CGI_10011005; scaffold308 WUBlastX LINE_RTE-BovB 69493 69615 95 - . . scaffold308 WUBlastX LINE_RTE-BovB 69587 69763 93 - . . scaffold308 TRF Tandem_Repeat 70350 70408 118 + . . scaffold308 GLEAN promoter 73381 74380 0.643337 + . ID=CGI_10011006; scaffold308 GLEAN mRNA 74381 86693 0.643337 + . ID=CGI_10011006; scaffold308 GLEAN mRNA 89849 109933 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX DNA_hAT-Tip100 102400 102711 100 - . . scaffold308 WUBlastX DNA_hAT-Tip100 102451 102801 147 - . . scaffold308 WUBlastX DNA_hAT-Tip100 102734 103567 181 - . . scaffold308 WUBlastX DNA_hAT 103519 103716 100 - . . scaffold308 WUBlastX DNA_hAT-Tip100 103710 104438 141 - . . scaffold308 WUBlastX DNA_hAT-Tip100 103776 104192 159 - . . scaffold308 TRF Tandem_Repeat 107342 107395 67 + . . scaffold308 TRF Tandem_Repeat 107345 107390 67 + . . scaffold308 GLEAN promoter 109934 110933 0.990769 - . ID=CGI_10011007; scaffold308 WUBlastX LINE_RTE-X 111309 111695 68 - . . scaffold308 WUBlastX LINE_RTE-X 111384 111647 106 - . . scaffold308 WUBlastX LINE_RTE-X 111432 111731 103 - . . scaffold308 WUBlastX LINE_RTE-X 111736 112158 46 - . . scaffold308 WUBlastX LINE_RTE-X 111805 112161 75 - . . scaffold308 WUBlastX LINE_RTE-X 111919 112170 83 - . . scaffold308 GLEAN promoter 114120 115119 0.592967 + . ID=CGI_10011008; scaffold308 GLEAN mRNA 115120 124534 0.592967 + . ID=CGI_10011008; scaffold308 GLEAN mRNA 126406 141291 0.896658 - . ID=CGI_10011009; scaffold308 GLEAN promoter 141292 142291 0.896658 - . ID=CGI_10011009; scaffold308 TRF Tandem_Repeat 143037 143077 82 + . . scaffold308 TRF Tandem_Repeat 143744 143770 54 + . . scaffold308 TRF Tandem_Repeat 143825 143854 60 + . . scaffold308 GLEAN promoter 151686 152685 0.777738 + . ID=CGI_10011010; scaffold308 GLEAN mRNA 152686 164599 0.777738 + . ID=CGI_10011010; scaffold308 TRF Tandem_Repeat 153641 153681 82 + . . scaffold308 WUBlastX DNA_Harbinger 207197 207364 54 + . . scaffold308 WUBlastX DNA_Harbinger 208158 208241 23 + . . scaffold308 WUBlastX DNA_Harbinger 209143 209445 49 - . . scaffold308 WUBlastX DNA_Harbinger 210893 211147 196 - . . scaffold308 WUBlastX DNA_Harbinger 211682 211942 122 - . . scaffold308 WUBlastX DNA_Harbinger 211694 211906 142 - . . scaffold308 WUBlastX DNA_Harbinger 212243 212554 97 - . . scaffold308 GLEAN promoter 214737 215736 0.990644 + . ID=CGI_10011011; scaffold308 GLEAN mRNA 215737 223565 0.990644 + . ID=CGI_10011011; scaffold308 TRF Tandem_Repeat 230067 230122 67 + . . scaffold308 TRF Tandem_Repeat 235083 235143 50 + . . scaffold308 TRF Tandem_Repeat 235215 235278 67 + . . scaffold308 GLEAN promoter 236111 237110 0.967924 + . ID=CGI_10011012; scaffold308 TRF Tandem_Repeat 236844 236884 82 + . . scaffold308 GLEAN mRNA 237111 239108 0.967924 + . ID=CGI_10011012; scaffold308 TRF Tandem_Repeat 247392 247480 160 + . . scaffold308 TRF Tandem_Repeat 248208 248296 81 + . . scaffold308 TRF Tandem_Repeat 248369 248429 50 + . . scaffold308 TRF Tandem_Repeat 248617 248643 54 + . . scaffold308 GLEAN promoter 249418 250417 0.999372 + . ID=CGI_10011014; scaffold308 GLEAN mRNA 250017 250217 0.592128 - . ID=CGI_10011013; scaffold308 GLEAN promoter 250218 251217 0.592128 - . ID=CGI_10011013; scaffold308 WUBlastX DNA_TcMar-Fot1 250366 250782 50 - . . scaffold308 GLEAN mRNA 250418 250642 0.999372 + . ID=CGI_10011014; scaffold308 WUBlastX DNA_TcMar-Fot1 250865 251083 53 - . . scaffold308 GLEAN promoter 254055 255054 0.791673 + . ID=CGI_10011015; scaffold308 GLEAN mRNA 255055 256563 0.791673 + . ID=CGI_10011015; scaffold308 TRF Tandem_Repeat 258790 258844 110 + . . scaffold308 TRF Tandem_Repeat 261041 261092 95 + . . scaffold308 TRF Tandem_Repeat 261593 262031 499 + . . scaffold308 TRF Tandem_Repeat 269498 269548 102 + . . scaffold308 TRF Tandem_Repeat 269581 269614 68 + . . scaffold308 WUBlastX LINE_CR1 278029 278580 31 + . . scaffold308 WUBlastX LINE_CR1-L2 278167 278574 49 + . . scaffold308 WUBlastX LINE_CR1 278290 278574 72 + . . scaffold308 WUBlastX LINE_CR1 278302 278628 44 + . . scaffold308 WUBlastX LINE_L2 278640 278813 37 + . . scaffold308 WUBlastX LINE_CR1 278670 278804 66 + . . scaffold308 WUBlastX LINE_CR1-L2 278670 278831 40 + . . scaffold30814 GLEAN mRNA 3529 8232 0.998023 - . ID=CGI_10000671; scaffold30814 WUBlastX LINE_RTE-X 7062 7637 101 - . . scaffold30814 WUBlastX LINE_RTE-X 7661 7807 69 - . . scaffold30814 WUBlastX LINE_RTE-X 7682 7873 45 - . . scaffold30814 GLEAN promoter 8233 8389 0.998023 - . ID=CGI_10000671; scaffold30818 WUBlastX LTR_Gypsy 4548 4943 259 + . . scaffold30818 WUBlastX LTR_Gypsy 5737 6144 100 + . . scaffold30818 WUBlastX LTR_Gypsy-Cigr 6151 6837 54 + . . scaffold30818 WUBlastX LTR_Gypsy 6505 6936 248 + . . scaffold30818 WUBlastX LTR_Gypsy 7926 8132 57 + . . scaffold30826 GLEAN mRNA 723 2754 0.128145 - . ID=CGI_10000672; scaffold30826 GLEAN promoter 2755 3754 0.128145 - . ID=CGI_10000672; scaffold309 TRF Tandem_Repeat 670 1338 1009 + . . scaffold309 GLEAN promoter 12743 13742 0.761992 + . ID=CGI_10007932; scaffold309 GLEAN mRNA 13743 17131 0.761992 + . ID=CGI_10007932; scaffold309 GLEAN mRNA 18514 22474 1 - . ID=CGI_10007933; scaffold309 GLEAN promoter 21872 22871 1 + . ID=CGI_10007934; scaffold309 GLEAN promoter 22475 23474 1 - . ID=CGI_10007933; scaffold309 GLEAN mRNA 22872 26714 1 + . ID=CGI_10007934; scaffold309 TRF Tandem_Repeat 27136 27189 108 + . . scaffold309 GLEAN promoter 28022 29021 0.840268 + . ID=CGI_10007935; scaffold309 GLEAN mRNA 29022 44048 0.840268 + . ID=CGI_10007935; scaffold309 TRF Tandem_Repeat 30808 30848 82 + . . scaffold309 TRF Tandem_Repeat 36067 36105 69 + . . scaffold309 TRF Tandem_Repeat 38758 38792 52 + . . scaffold309 TRF Tandem_Repeat 54825 54874 100 + . . scaffold309 WUBlastX LINE_R1 72548 72604 24 + . . scaffold309 WUBlastX LINE_L2 72591 72659 21 + . . scaffold309 WUBlastX LINE_L2 73457 73795 65 + . . scaffold309 WUBlastX LINE_CR1 73487 74914 37 + . . scaffold309 WUBlastX LINE_RTE-X 73508 74680 200 + . . scaffold309 WUBlastX LINE_I 75226 75309 26 + . . scaffold309 TRF Tandem_Repeat 81234 81968 699 + . . scaffold309 GLEAN mRNA 85112 86125 0.662043 - . ID=CGI_10007936; scaffold309 GLEAN promoter 86126 87125 0.662043 - . ID=CGI_10007936; scaffold309 GLEAN mRNA 99423 114435 0.262097 - . ID=CGI_10007937; scaffold309 GLEAN promoter 114436 115435 0.262097 - . ID=CGI_10007937; scaffold309 TRF Tandem_Repeat 117941 118629 517 + . . scaffold309 WUBlastX LTR_Gypsy-Cigr 131368 132399 190 + . . scaffold309 WUBlastX LTR_Gypsy 132432 132884 51 + . . scaffold309 WUBlastX LTR_Gypsy 132501 133235 86 + . . scaffold309 WUBlastX LTR_Gypsy 132648 136223 2416 + . . scaffold309 WUBlastX LTR_Gypsy 134925 136517 666 + . . scaffold309 WUBlastX DNA_hAT-Tip100 137537 139081 634 - . . scaffold309 WUBlastX DNA_hAT-Tip100 139389 139682 113 - . . scaffold309 WUBlastX DNA_hAT-Tip100 139676 139912 31 - . . scaffold309 WUBlastX DNA_hAT-Tip100 139709 139846 40 - . . scaffold309 TRF Tandem_Repeat 143602 143668 89 + . . scaffold309 TRF Tandem_Repeat 146717 146783 89 + . . scaffold309 TRF Tandem_Repeat 149508 149546 78 + . . scaffold309 TRF Tandem_Repeat 150920 151000 56 + . . scaffold309 TRF Tandem_Repeat 151230 151263 68 + . . scaffold309 TRF Tandem_Repeat 153484 153609 198 + . . scaffold309 TRF Tandem_Repeat 157591 157649 118 + . . scaffold309 TRF Tandem_Repeat 159538 159606 88 + . . scaffold309 TRF Tandem_Repeat 159538 159616 94 + . . scaffold309 TRF Tandem_Repeat 159540 159616 56 + . . scaffold309 TRF Tandem_Repeat 159617 159667 102 + . . scaffold309 TRF Tandem_Repeat 159666 159712 85 + . . scaffold309 TRF Tandem_Repeat 160467 160529 126 + . . scaffold309 TRF Tandem_Repeat 161543 161577 70 + . . scaffold309 TRF Tandem_Repeat 168308 168369 92 + . . scaffold309 TRF Tandem_Repeat 168308 168369 79 + . . scaffold309 TRF Tandem_Repeat 168308 168369 79 + . . scaffold309 TRF Tandem_Repeat 170265 170303 78 + . . scaffold309 WUBlastX LINE_L1-Tx1 173449 173634 26 - . . scaffold309 WUBlastX LINE_L1-Tx1 173631 174686 403 - . . scaffold309 WUBlastX LINE_L1-Tx1 174682 177087 1448 - . . scaffold309 GLEAN mRNA 178045 179781 0.835602 - . ID=CGI_10007938; scaffold309 WUBlastX LINE_L2 178525 178770 45 - . . scaffold309 GLEAN promoter 179782 180781 0.835602 - . ID=CGI_10007938; scaffold309 GLEAN promoter 180028 181027 0.999353 + . ID=CGI_10007939; scaffold309 GLEAN mRNA 181028 190772 0.999353 + . ID=CGI_10007939; scaffold309 TRF Tandem_Repeat 182982 183015 50 + . . scaffold309 TRF Tandem_Repeat 184855 184915 106 + . . scaffold309 TRF Tandem_Repeat 186473 186523 84 + . . scaffold30922 GLEAN promoter 1 174 1 + . ID=CGI_10000687; scaffold30922 GLEAN mRNA 175 7514 1 + . ID=CGI_10000687; scaffold31 GLEAN mRNA 7584 16133 0.792688 - . ID=CGI_10013551; scaffold31 WUBlastX LINE_L1-Tx1 11350 12948 319 - . . scaffold31 TRF Tandem_Repeat 12999 13052 74 + . . scaffold31 WUBlastX LINE_L1-Tx1 14636 14737 32 - . . scaffold31 WUBlastX LINE_L1-Tx1 14675 14986 164 - . . scaffold31 WUBlastX LINE_L1-Tx1 14711 15043 36 - . . scaffold31 WUBlastX LINE_RTE-BovB 15264 15599 77 - . . scaffold31 WUBlastX LINE_L2 15324 15875 115 - . . scaffold31 WUBlastX LINE_L2 15327 16022 114 - . . scaffold31 WUBlastX LINE_L1 15375 16166 40 - . . scaffold31 GLEAN promoter 16134 17133 0.792688 - . ID=CGI_10013551; scaffold31 TRF Tandem_Repeat 18376 18405 60 + . . scaffold31 GLEAN mRNA 24433 24621 1 - . ID=CGI_10013552; scaffold31 GLEAN promoter 24622 25621 1 - . ID=CGI_10013552; scaffold31 TRF Tandem_Repeat 24855 24915 122 + . . scaffold31 GLEAN promoter 37177 38176 0.77308 + . ID=CGI_10013553; scaffold31 GLEAN mRNA 38177 45852 0.77308 + . ID=CGI_10013553; scaffold31 GLEAN mRNA 46281 47426 0.618115 - . ID=CGI_10013554; scaffold31 GLEAN promoter 46608 47607 0.999938 + . ID=CGI_10013555; scaffold31 GLEAN promoter 47427 48426 0.618115 - . ID=CGI_10013554; scaffold31 GLEAN mRNA 47608 48054 0.999938 + . ID=CGI_10013555; scaffold31 GLEAN mRNA 48335 54222 0.790194 - . ID=CGI_10013556; scaffold31 GLEAN promoter 54223 55222 0.790194 - . ID=CGI_10013556; scaffold31 WUBlastX LINE_CR1-L2 64111 64692 98 + . . scaffold31 WUBlastX LINE_L2 64306 64692 143 + . . scaffold31 TRF Tandem_Repeat 65261 65370 89 + . . scaffold31 TRF Tandem_Repeat 66402 66491 73 + . . scaffold31 WUBlastX LINE_CR1-L2 66699 67232 93 + . . scaffold31 WUBlastX LINE_L2 66786 67232 139 + . . scaffold31 WUBlastX LINE_CR1-L2 66936 67322 90 + . . scaffold31 WUBlastX LINE_L2 67240 67452 48 + . . scaffold31 WUBlastX LINE_CR1-L2 67264 67374 52 + . . scaffold31 WUBlastX LINE_L2 67451 67630 36 + . . scaffold31 GLEAN promoter 89738 90737 0.889522 + . ID=CGI_10013557; scaffold31 GLEAN mRNA 90738 100165 0.889522 + . ID=CGI_10013557; scaffold31 TRF Tandem_Repeat 91813 91846 68 + . . scaffold31 TRF Tandem_Repeat 99121 99446 234 + . . scaffold31 TRF Tandem_Repeat 99121 99492 575 + . . scaffold31 WUBlastX DNA_TcMar-Tc1 102044 102613 80 - . . scaffold31 WUBlastX DNA_TcMar-Tc1 102044 102343 176 - . . scaffold31 WUBlastX DNA_TcMar-Tc1 102884 103054 25 - . . scaffold31 WUBlastX DNA_TcMar-Tc1 102911 103048 34 - . . scaffold31 WUBlastX DNA_TcMar-Tc1 102911 103144 21 - . . scaffold31 TRF Tandem_Repeat 104956 104994 60 + . . scaffold31 TRF Tandem_Repeat 113651 113681 62 + . . scaffold31 TRF Tandem_Repeat 116531 116733 232 + . . scaffold31 TRF Tandem_Repeat 123633 123667 70 + . . scaffold31 TRF Tandem_Repeat 126419 126559 111 + . . scaffold31 GLEAN promoter 129945 130944 0.976297 + . ID=CGI_10013558; scaffold31 GLEAN mRNA 130945 152380 0.976297 + . ID=CGI_10013558; scaffold31 TRF Tandem_Repeat 131393 131533 111 + . . scaffold31 TRF Tandem_Repeat 132462 132595 104 + . . scaffold31 GLEAN promoter 151501 152500 0.999473 + . ID=CGI_10013559; scaffold31 GLEAN mRNA 152501 160123 0.999473 + . ID=CGI_10013559; scaffold31 GLEAN promoter 166305 167304 0.965717 + . ID=CGI_10013560; scaffold31 WUBlastX LTR_Ngaro 166937 167053 65 + . . scaffold31 GLEAN mRNA 167305 183497 0.965717 + . ID=CGI_10013560; scaffold31 TRF Tandem_Repeat 171382 171487 51 + . . scaffold31 TRF Tandem_Repeat 171446 171498 52 + . . scaffold31 WUBlastX LINE_RTE-X 171751 172242 61 - . . scaffold31 WUBlastX LINE_RTE-X 171763 172131 117 - . . scaffold31 TRF Tandem_Repeat 174157 174246 90 + . . scaffold31 TRF Tandem_Repeat 175966 176058 96 + . . scaffold31 WUBlastX DNA_TcMar-Tc1 180763 181167 88 - . . scaffold31 WUBlastX DNA_TcMar-Tc1 180766 181050 173 - . . scaffold31 WUBlastX DNA_TcMar-Tc1 181135 181413 43 - . . scaffold31 TRF Tandem_Repeat 182071 183791 1466 + . . scaffold31 TRF Tandem_Repeat 184270 184941 634 + . . scaffold31 TRF Tandem_Repeat 184270 184940 632 + . . scaffold31 TRF Tandem_Repeat 184270 184945 510 + . . scaffold31 WUBlastX DNA_Maverick 199703 200530 102 + . . scaffold31 WUBlastX DNA_Maverick 201013 201372 105 - . . scaffold31 WUBlastX DNA_Maverick 201088 201372 106 - . . scaffold31 GLEAN mRNA 202867 210562 0.991871 - . ID=CGI_10013561; scaffold31 TRF Tandem_Repeat 204482 204506 50 + . . scaffold31 WUBlastX DNA_Maverick 209048 209113 22 - . . scaffold31 WUBlastX DNA_Maverick 209063 209113 24 - . . scaffold31 WUBlastX DNA_Maverick 209131 210144 541 - . . scaffold31 GLEAN promoter 210563 211562 0.991871 - . ID=CGI_10013561; scaffold31 WUBlastX DNA_Maverick 210960 211325 220 - . . scaffold31 WUBlastX DNA_Maverick 211239 211352 22 - . . scaffold31 WUBlastX DNA_Maverick 213798 214676 198 - . . scaffold31 WUBlastX DNA_Maverick 213987 214748 358 - . . scaffold31 WUBlastX LTR_Foamy 214779 214838 28 - . . scaffold31 WUBlastX LTR_Gypsy 214788 214856 20 - . . scaffold31 WUBlastX DNA_Maverick 215242 215865 424 - . . scaffold31 TRF Tandem_Repeat 219420 219452 66 + . . scaffold31 TRF Tandem_Repeat 219462 219534 146 + . . scaffold31 TRF Tandem_Repeat 220883 220934 50 + . . scaffold31 TRF Tandem_Repeat 225808 225859 104 + . . scaffold31 WUBlastX LINE_L1-Tx1 226225 227808 338 - . . scaffold31 WUBlastX LINE_L1-Tx1 227784 228434 382 - . . scaffold31 WUBlastX LINE_L1-Tx1 228395 229066 218 - . . scaffold31 WUBlastX LINE_L1-Tx1 229059 229643 334 - . . scaffold31 WUBlastX LINE_L2 230849 231166 49 - . . scaffold31 WUBlastX DNA_Sola 248686 249045 159 - . . scaffold31 WUBlastX DNA_Sola 249045 249200 33 - . . scaffold31 WUBlastX DNA_Sola 249123 249269 56 - . . scaffold31 WUBlastX DNA_Sola 249390 250007 299 - . . scaffold31 WUBlastX DNA_Sola 249870 250034 20 - . . scaffold31 WUBlastX DNA_Sola 250566 250691 91 - . . scaffold31 WUBlastX DNA_Sola 250887 251120 56 - . . scaffold31 WUBlastX DNA_Sola 251272 252060 353 - . . scaffold31 TRF Tandem_Repeat 257814 257846 66 + . . scaffold31 WUBlastX LINE_Penelope 264598 264942 39 - . . scaffold31 WUBlastX LINE_Penelope 264700 264858 43 - . . scaffold31 WUBlastX LINE_Penelope 265410 266252 193 - . . scaffold31 WUBlastX LINE_Penelope 266248 266646 134 - . . scaffold31 WUBlastX LINE_Penelope 266648 266992 44 - . . scaffold31 WUBlastX LINE_Penelope 266684 266941 160 - . . scaffold31 WUBlastX LINE_Penelope 266958 267317 131 - . . scaffold31 WUBlastX LINE_Penelope 266967 267794 21 - . . scaffold31 WUBlastX LINE_Penelope 267006 267542 91 - . . scaffold31 WUBlastX LINE_Penelope 267006 267434 127 - . . scaffold31 WUBlastX LINE_Penelope 267339 267590 49 - . . scaffold31 WUBlastX LINE_Penelope 268239 268583 39 + . . scaffold31 WUBlastX LINE_Penelope 268305 268559 40 + . . scaffold31 GLEAN mRNA 277804 281350 1 - . ID=CGI_10013562; scaffold31 GLEAN promoter 281351 282350 1 - . ID=CGI_10013562; scaffold31 TRF Tandem_Repeat 293842 293939 72 + . . scaffold31 TRF Tandem_Repeat 295465 295507 86 + . . scaffold31 TRF Tandem_Repeat 295505 295536 64 + . . scaffold31 TRF Tandem_Repeat 298621 298664 61 + . . scaffold31 TRF Tandem_Repeat 298622 298657 54 + . . scaffold31 TRF Tandem_Repeat 304538 304585 69 + . . scaffold31 GLEAN mRNA 307950 312540 0.882025 - . ID=CGI_10013563; scaffold31 GLEAN promoter 312541 313540 0.882025 - . ID=CGI_10013563; scaffold31 WUBlastX LTR_Pao 317671 319956 831 - . . scaffold31 WUBlastX LTR_Pao 320019 320426 184 - . . scaffold31 TRF Tandem_Repeat 320432 320494 126 + . . scaffold31 WUBlastX LTR_Pao 320682 320759 20 - . . scaffold31 TRF Tandem_Repeat 323775 323806 55 + . . scaffold31 TRF Tandem_Repeat 326430 326469 80 + . . scaffold31 TRF Tandem_Repeat 330217 331072 1136 + . . scaffold31 TRF Tandem_Repeat 333176 333214 78 + . . scaffold31 TRF Tandem_Repeat 343478 343514 65 + . . scaffold31 TRF Tandem_Repeat 352924 353034 91 + . . scaffold31 TRF Tandem_Repeat 353398 353439 68 + . . scaffold31 TRF Tandem_Repeat 358591 358635 90 + . . scaffold310 TRF Tandem_Repeat 10739 10787 98 + . . scaffold310 WUBlastX LTR_Gypsy 13879 14286 182 + . . scaffold310 WUBlastX LTR_Gypsy 14605 14970 75 + . . scaffold310 WUBlastX LTR_Gypsy 15835 15894 42 + . . scaffold310 WUBlastX LTR_Gypsy 16619 16744 52 + . . scaffold310 WUBlastX LTR_Gypsy 16759 16830 30 + . . scaffold310 TRF Tandem_Repeat 19924 19949 52 + . . scaffold310 TRF Tandem_Repeat 22755 22821 79 + . . scaffold310 TRF Tandem_Repeat 22756 22821 64 + . . scaffold310 TRF Tandem_Repeat 22758 22824 58 + . . scaffold310 GLEAN promoter 24873 25872 0.702619 + . ID=CGI_10003115; scaffold310 GLEAN mRNA 25873 26421 0.702619 + . ID=CGI_10003115; scaffold310 TRF Tandem_Repeat 33881 33915 70 + . . scaffold310 TRF Tandem_Repeat 36990 37073 132 + . . scaffold310 TRF Tandem_Repeat 57248 57293 92 + . . scaffold310 TRF Tandem_Repeat 60364 60488 99 + . . scaffold31002 WUBlastX LTR_Ngaro 4298 4492 75 + . . scaffold31002 WUBlastX DNA_TcMar-Marin 5317 5490 25 - . . scaffold31002 WUBlastX DNA_TcMar-Marin 5329 5406 43 - . . scaffold31008 GLEAN promoter 1 278 0.5 + . ID=CGI_10000694; scaffold31008 GLEAN mRNA 279 6937 0.5 + . ID=CGI_10000694; scaffold31032 WUBlastX DNA_Harbinger 7889 8008 32 + . . scaffold31032 WUBlastX DNA_Harbinger 8004 8087 39 + . . scaffold31032 WUBlastX DNA_Harbinger 8077 8178 80 + . . scaffold31032 WUBlastX DNA_Harbinger 8089 8226 76 + . . scaffold31032 WUBlastX DNA_Harbinger 8214 8351 44 + . . scaffold31038 GLEAN mRNA 2351 5102 1 - . ID=CGI_10000659; scaffold31038 GLEAN promoter 5103 6102 1 - . ID=CGI_10000659; scaffold31038 GLEAN mRNA 5779 7395 1 - . ID=CGI_10000660; scaffold31038 GLEAN promoter 7396 8257 1 - . ID=CGI_10000660; scaffold31080 GLEAN mRNA 1298 4385 0.999042 - . ID=CGI_10000701; scaffold31080 GLEAN promoter 4386 5385 0.999042 - . ID=CGI_10000701; scaffold31080 GLEAN mRNA 5684 6199 0.999048 - . ID=CGI_10000702; scaffold31080 GLEAN promoter 6200 7199 0.999048 - . ID=CGI_10000702; scaffold31090 WUBlastX RC_Helitron 3464 3952 80 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 5002 5184 27 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 5005 5142 29 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 5552 5800 46 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 5597 5821 57 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6084 6308 58 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6132 6365 75 + . . scaffold31090 GLEAN promoter 6476 7475 1 + . ID=CGI_10000703; scaffold31090 WUBlastX DNA_TcMar-Fot1 6590 6841 94 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6641 6880 88 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6826 6954 70 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6862 6987 40 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 6865 7044 32 + . . scaffold31090 WUBlastX DNA_TcMar-Fot1 7202 7327 32 + . . scaffold31090 GLEAN mRNA 7476 8526 1 + . ID=CGI_10000703; scaffold31090 TRF Tandem_Repeat 7563 7587 50 + . . scaffold311 TRF Tandem_Repeat 415 463 98 + . . scaffold311 TRF Tandem_Repeat 556 586 62 + . . scaffold311 WUBlastX LINE_RTE-X 6351 6863 64 - . . scaffold311 WUBlastX LINE_RTE-X 6459 6872 130 - . . scaffold311 WUBlastX LINE_RTE-X 6519 6938 79 - . . scaffold311 WUBlastX LINE_RTE-X 7105 7245 31 - . . scaffold311 WUBlastX LINE_RTE-X 7253 7414 38 - . . scaffold311 WUBlastX LINE_RTE-X 7355 7450 27 - . . scaffold311 WUBlastX LINE_RTE-X 7501 7575 37 - . . scaffold311 TRF Tandem_Repeat 9473 9508 54 + . . scaffold311 GLEAN promoter 12158 13157 0.999997 + . ID=CGI_10004623; scaffold311 GLEAN mRNA 13158 19644 0.999997 + . ID=CGI_10004623; scaffold311 TRF Tandem_Repeat 14830 14866 74 + . . scaffold311 TRF Tandem_Repeat 14903 14942 62 + . . scaffold311 TRF Tandem_Repeat 15287 15341 65 + . . scaffold311 TRF Tandem_Repeat 15396 15467 144 + . . scaffold311 GLEAN mRNA 20031 30727 0.989819 - . ID=CGI_10004624; scaffold311 TRF Tandem_Repeat 21331 21452 167 + . . scaffold311 GLEAN promoter 30728 31727 0.989819 - . ID=CGI_10004624; scaffold311 GLEAN mRNA 34625 48009 0.368198 - . ID=CGI_10004625; scaffold311 TRF Tandem_Repeat 36793 36819 54 + . . scaffold311 GLEAN promoter 48010 49009 0.368198 - . ID=CGI_10004625; scaffold311 TRF Tandem_Repeat 50106 50180 57 + . . scaffold311 TRF Tandem_Repeat 50108 50231 62 + . . scaffold311 TRF Tandem_Repeat 50132 50503 358 + . . scaffold311 GLEAN promoter 50237 51236 0.389749 + . ID=CGI_10004626; scaffold311 TRF Tandem_Repeat 50792 50999 398 + . . scaffold311 GLEAN mRNA 51237 66209 0.389749 + . ID=CGI_10004626; scaffold311 TRF Tandem_Repeat 53535 53624 99 + . . scaffold311 TRF Tandem_Repeat 57168 57269 132 + . . scaffold311 TRF Tandem_Repeat 58150 58217 118 + . . scaffold311 TRF Tandem_Repeat 63660 63691 64 + . . scaffold311 GLEAN promoter 65557 66556 0.841726 + . ID=CGI_10004627; scaffold311 GLEAN mRNA 66557 77834 0.841726 + . ID=CGI_10004627; scaffold311 GLEAN promoter 78709 79708 0.805158 + . ID=CGI_10004628; scaffold311 GLEAN mRNA 79709 85089 0.805158 + . ID=CGI_10004628; scaffold311 TRF Tandem_Repeat 80950 80999 64 + . . scaffold311 GLEAN mRNA 86687 91589 1 - . ID=CGI_10004629; scaffold311 TRF Tandem_Repeat 91465 91509 83 + . . scaffold311 GLEAN promoter 91590 92589 1 - . ID=CGI_10004629; scaffold311 TRF Tandem_Repeat 101098 101164 80 + . . scaffold311 TRF Tandem_Repeat 103950 104000 56 + . . scaffold311 TRF Tandem_Repeat 103954 104001 60 + . . scaffold312 GLEAN mRNA 5658 8052 0.999993 - . ID=CGI_10002621; scaffold312 TRF Tandem_Repeat 6645 6693 52 + . . scaffold312 GLEAN promoter 8053 9052 0.999993 - . ID=CGI_10002621; scaffold312 TRF Tandem_Repeat 11348 11399 104 + . . scaffold312 TRF Tandem_Repeat 12019 12108 119 + . . scaffold312 TRF Tandem_Repeat 15595 15638 79 + . . scaffold312 GLEAN promoter 18370 19369 0.528484 + . ID=CGI_10002622; scaffold312 GLEAN mRNA 19370 19876 0.528484 + . ID=CGI_10002622; scaffold312 TRF Tandem_Repeat 20976 21029 83 + . . scaffold312 GLEAN mRNA 31507 32194 0.920525 - . ID=CGI_10002623; scaffold312 GLEAN promoter 32195 33194 0.920525 - . ID=CGI_10002623; scaffold312 WUBlastX DNA_Maverick 34702 34812 53 - . . scaffold312 WUBlastX DNA_Maverick 34797 34985 71 - . . scaffold312 WUBlastX DNA_Maverick 34887 35150 59 - . . scaffold312 WUBlastX DNA_Maverick 35308 35676 85 - . . scaffold312 WUBlastX DNA_Maverick 35497 35688 86 - . . scaffold312 WUBlastX DNA_Maverick 36607 37104 310 - . . scaffold312 WUBlastX DNA_Maverick 36932 37663 397 - . . scaffold312 WUBlastX DNA_Maverick 37103 37705 446 - . . scaffold312 WUBlastX DNA_Maverick 37882 37980 20 - . . scaffold312 WUBlastX DNA_Maverick 37950 38390 133 - . . scaffold312 WUBlastX DNA_Maverick 38001 38468 116 - . . scaffold312 GLEAN mRNA 38928 39383 0.999984 - . ID=CGI_10002624; scaffold312 GLEAN promoter 39384 40383 0.999984 - . ID=CGI_10002624; scaffold312 WUBlastX DNA_Maverick 39832 39915 27 - . . scaffold312 WUBlastX DNA_Maverick 39915 40394 302 - . . scaffold312 WUBlastX DNA_Maverick 40361 40423 29 - . . scaffold312 WUBlastX DNA_Maverick 40586 40831 125 - . . scaffold312 WUBlastX DNA_Maverick 40842 41063 193 - . . scaffold312 WUBlastX DNA_Maverick 41086 41802 469 - . . scaffold312 WUBlastX DNA_Maverick 41200 41796 499 - . . scaffold312 WUBlastX DNA_Maverick 41771 42865 603 - . . scaffold312 WUBlastX DNA_Maverick 43878 45398 232 - . . scaffold312 WUBlastX DNA_PiggyBac 48602 48745 75 + . . scaffold31222 WUBlastX LINE_CR1 2821 3204 179 - . . scaffold31222 WUBlastX LINE_CR1 2851 3363 36 - . . scaffold31222 WUBlastX LINE_CR1 2905 3270 73 - . . scaffold31222 WUBlastX LINE_L1-Tx1 6000 6068 34 - . . scaffold31222 WUBlastX LINE_L1-Tx1 6055 6180 42 - . . scaffold31222 WUBlastX LTR_Ngaro 6883 7335 252 + . . scaffold31222 WUBlastX LTR_Ngaro 7245 7754 91 + . . scaffold31222 WUBlastX LTR_Ngaro 7556 8200 130 + . . scaffold31222 WUBlastX LTR_Ngaro 7754 8200 156 + . . scaffold31230 GLEAN promoter 1 304 1 + . ID=CGI_10000710; scaffold31230 GLEAN mRNA 305 2233 1 + . ID=CGI_10000710; scaffold31230 GLEAN mRNA 3513 4964 0.999372 - . ID=CGI_10000711; scaffold31230 GLEAN promoter 4965 5964 0.999372 - . ID=CGI_10000711; scaffold31230 WUBlastX LINE_L1 8044 8832 95 + . . scaffold31230 WUBlastX LINE_L1 8164 8889 252 + . . scaffold31250 GLEAN mRNA 1930 3302 1 - . ID=CGI_10000712; scaffold31250 GLEAN promoter 3303 4302 1 - . ID=CGI_10000712; scaffold313 GLEAN mRNA 6822 7295 0.449005 - . ID=CGI_10026578; scaffold313 GLEAN promoter 7296 8295 0.449005 - . ID=CGI_10026578; scaffold313 GLEAN mRNA 7868 8491 0.733495 - . ID=CGI_10026579; scaffold313 GLEAN promoter 8492 9491 0.733495 - . ID=CGI_10026579; scaffold313 GLEAN mRNA 12138 13796 0.988982 - . ID=CGI_10026580; scaffold313 GLEAN promoter 13797 14796 0.988982 - . ID=CGI_10026580; scaffold313 TRF Tandem_Repeat 49701 49904 241 + . . scaffold313 GLEAN mRNA 54623 62299 0.994679 - . ID=CGI_10026581; scaffold313 GLEAN promoter 62300 63299 0.994679 - . ID=CGI_10026581; scaffold313 TRF Tandem_Repeat 62791 62830 80 + . . scaffold313 TRF Tandem_Repeat 68233 68278 67 + . . scaffold313 GLEAN promoter 69809 70808 0.573321 + . ID=CGI_10026582; scaffold313 GLEAN mRNA 70809 71471 0.573321 + . ID=CGI_10026582; scaffold313 WUBlastX LTR_DIRS 90699 91208 156 - . . scaffold313 WUBlastX LTR_DIRS 91370 91531 71 - . . scaffold313 GLEAN promoter 97444 98443 0.278301 + . ID=CGI_10026583; scaffold313 GLEAN mRNA 98444 128365 0.278301 + . ID=CGI_10026583; scaffold313 TRF Tandem_Repeat 114991 115058 113 + . . scaffold313 WUBlastX LINE_L1 129541 130047 24 + . . scaffold313 WUBlastX LINE_RTE-X 129637 130680 576 + . . scaffold313 WUBlastX LINE_RTE-X 130033 130848 198 + . . scaffold313 TRF Tandem_Repeat 132508 132554 94 + . . scaffold313 WUBlastX LINE_RTE-X 134153 134479 70 + . . scaffold313 WUBlastX LINE_RTE-X 134297 134482 93 + . . scaffold313 WUBlastX LINE_RTE-X 134297 134557 77 + . . scaffold313 WUBlastX LINE_RTE-X 134306 134446 95 + . . scaffold313 WUBlastX LINE_RTE-X 134315 134515 78 + . . scaffold313 GLEAN mRNA 134319 135998 0.83601 - . ID=CGI_10026584; scaffold313 GLEAN promoter 135999 136998 0.83601 - . ID=CGI_10026584; scaffold313 WUBlastX LINE_L1 136077 136583 24 + . . scaffold313 WUBlastX LINE_RTE-X 136173 137234 565 + . . scaffold313 GLEAN mRNA 140804 150389 0.999929 - . ID=CGI_10026585; scaffold313 GLEAN promoter 150390 151389 0.999929 - . ID=CGI_10026585; scaffold313 GLEAN mRNA 152241 158129 0.999929 - . ID=CGI_10026586; scaffold313 WUBlastX LTR_Gypsy 154336 155241 74 - . . scaffold313 WUBlastX LTR_Gypsy 154579 154962 82 - . . scaffold313 GLEAN promoter 158130 159129 0.999929 - . ID=CGI_10026586; scaffold313 GLEAN mRNA 172641 202546 0.999999 - . ID=CGI_10026587; scaffold313 GLEAN promoter 202547 203546 0.999999 - . ID=CGI_10026587; scaffold313 GLEAN promoter 203676 204675 0.639977 + . ID=CGI_10026588; scaffold313 GLEAN mRNA 204676 210794 0.639977 + . ID=CGI_10026588; scaffold313 TRF Tandem_Repeat 208448 208473 52 + . . scaffold313 TRF Tandem_Repeat 210600 210647 55 + . . scaffold313 GLEAN mRNA 211732 218411 0.996441 - . ID=CGI_10026589; scaffold313 GLEAN promoter 218412 219411 0.996441 - . ID=CGI_10026589; scaffold313 GLEAN promoter 219394 220393 0.659826 + . ID=CGI_10026590; scaffold313 GLEAN mRNA 220394 244726 0.659826 + . ID=CGI_10026590; scaffold313 GLEAN mRNA 226147 228819 1 - . ID=CGI_10026591; scaffold313 GLEAN promoter 228820 229819 1 - . ID=CGI_10026591; scaffold313 TRF Tandem_Repeat 230393 230439 94 + . . scaffold313 TRF Tandem_Repeat 246916 246943 56 + . . scaffold313 GLEAN mRNA 247354 247752 0.593391 - . ID=CGI_10026592; scaffold313 GLEAN promoter 247753 248752 0.593391 - . ID=CGI_10026592; scaffold313 GLEAN promoter 250559 251558 0.971004 + . ID=CGI_10026593; scaffold313 GLEAN mRNA 251559 259271 0.971004 + . ID=CGI_10026593; scaffold313 TRF Tandem_Repeat 255376 255891 622 + . . scaffold313 TRF Tandem_Repeat 255454 255891 687 + . . scaffold313 TRF Tandem_Repeat 256500 256539 71 + . . scaffold313 TRF Tandem_Repeat 265937 266857 628 + . . scaffold313 TRF Tandem_Repeat 265953 266869 745 + . . scaffold313 GLEAN promoter 286632 287631 0.86591 + . ID=CGI_10026594; scaffold313 GLEAN mRNA 287632 291451 0.86591 + . ID=CGI_10026594; scaffold313 GLEAN mRNA 292287 297718 1 - . ID=CGI_10026595; scaffold313 GLEAN promoter 297719 298718 1 - . ID=CGI_10026595; scaffold313 TRF Tandem_Repeat 298067 298113 94 + . . scaffold313 TRF Tandem_Repeat 299530 299574 83 + . . scaffold313 GLEAN promoter 299761 300760 0.999995 + . ID=CGI_10026596; scaffold313 GLEAN mRNA 300761 318305 0.999995 + . ID=CGI_10026596; scaffold313 TRF Tandem_Repeat 303856 303906 95 + . . scaffold313 TRF Tandem_Repeat 307519 307765 173 + . . scaffold313 TRF Tandem_Repeat 307608 307740 127 + . . scaffold313 GLEAN mRNA 320543 341600 0.710223 - . ID=CGI_10026597; scaffold313 GLEAN promoter 341601 342600 0.710223 - . ID=CGI_10026597; scaffold313 GLEAN promoter 357308 358307 0.9998 + . ID=CGI_10026598; scaffold313 GLEAN mRNA 358308 363363 0.9998 + . ID=CGI_10026598; scaffold313 TRF Tandem_Repeat 362526 362564 60 + . . scaffold313 GLEAN promoter 379709 380708 0.907266 + . ID=CGI_10026599; scaffold313 GLEAN mRNA 380709 385131 0.907266 + . ID=CGI_10026599; scaffold313 TRF Tandem_Repeat 383772 383996 227 + . . scaffold313 GLEAN promoter 386360 387359 1 + . ID=CGI_10026600; scaffold313 GLEAN mRNA 387360 391805 1 + . ID=CGI_10026600; scaffold313 GLEAN promoter 391998 392997 0.999928 + . ID=CGI_10026601; scaffold313 GLEAN mRNA 392998 397510 0.999928 + . ID=CGI_10026601; scaffold313 TRF Tandem_Repeat 394411 394467 105 + . . scaffold313 GLEAN promoter 397587 398586 1 + . ID=CGI_10026602; scaffold313 GLEAN mRNA 398587 404384 1 + . ID=CGI_10026602; scaffold313 GLEAN promoter 404100 405099 0.675929 + . ID=CGI_10026603; scaffold313 GLEAN mRNA 405100 422748 0.675929 + . ID=CGI_10026603; scaffold313 TRF Tandem_Repeat 407823 407863 82 + . . scaffold313 TRF Tandem_Repeat 408652 408696 81 + . . scaffold313 TRF Tandem_Repeat 410022 410060 53 + . . scaffold313 WUBlastX DNA_Harbinger 418123 418389 33 - . . scaffold313 WUBlastX DNA_Harbinger 418418 418702 56 - . . scaffold313 TRF Tandem_Repeat 423639 424451 719 + . . scaffold313 TRF Tandem_Repeat 423649 424451 886 + . . scaffold313 GLEAN promoter 423789 424788 0.994822 + . ID=CGI_10026604; scaffold313 GLEAN mRNA 424789 433400 0.994822 + . ID=CGI_10026604; scaffold313 TRF Tandem_Repeat 428884 428935 104 + . . scaffold313 TRF Tandem_Repeat 431331 431620 424 + . . scaffold313 TRF Tandem_Repeat 432262 432377 169 + . . scaffold313 TRF Tandem_Repeat 432262 432377 181 + . . scaffold313 TRF Tandem_Repeat 435920 436010 182 + . . scaffold313 TRF Tandem_Repeat 437169 437228 111 + . . scaffold313 TRF Tandem_Repeat 437318 437346 58 + . . scaffold313 GLEAN promoter 439197 440196 1 + . ID=CGI_10026605; scaffold313 GLEAN mRNA 440197 447040 1 + . ID=CGI_10026605; scaffold313 WUBlastX LINE_RTE-X 450244 451635 799 - . . scaffold313 WUBlastX LINE_RTE-X 451628 452731 677 - . . scaffold313 WUBlastX LINE_RTE-X 452754 454736 775 + . . scaffold313 GLEAN promoter 456173 457172 0.734544 + . ID=CGI_10026606; scaffold313 GLEAN mRNA 457173 459880 0.734544 + . ID=CGI_10026606; scaffold313 TRF Tandem_Repeat 458787 458838 104 + . . scaffold313 WUBlastX LINE_RTE-X 462681 462872 42 + . . scaffold313 WUBlastX LINE_RTE-X 463810 463890 40 - . . scaffold313 WUBlastX LINE_RTE-X 463905 464192 46 - . . scaffold313 WUBlastX LINE_RTE-X 464195 464293 54 - . . scaffold313 GLEAN promoter 464753 465752 0.750802 + . ID=CGI_10026607; scaffold313 GLEAN mRNA 465753 511188 0.750802 + . ID=CGI_10026607; scaffold313 TRF Tandem_Repeat 473049 473425 459 + . . scaffold313 TRF Tandem_Repeat 473049 473434 529 + . . scaffold313 TRF Tandem_Repeat 476063 476638 640 + . . scaffold313 GLEAN mRNA 488158 500486 0.614072 - . ID=CGI_10026608; scaffold313 TRF Tandem_Repeat 489966 490084 220 + . . scaffold313 GLEAN promoter 500487 501486 0.614072 - . ID=CGI_10026608; scaffold313 GLEAN mRNA 515691 517549 0.992588 - . ID=CGI_10026609; scaffold313 GLEAN promoter 517550 518549 0.992588 - . ID=CGI_10026609; scaffold313 GLEAN promoter 520818 521817 0.94186 + . ID=CGI_10026610; scaffold313 GLEAN mRNA 521818 560094 0.94186 + . ID=CGI_10026610; scaffold313 TRF Tandem_Repeat 527443 528117 1111 + . . scaffold313 GLEAN promoter 562651 563650 0.993527 + . ID=CGI_10026611; scaffold313 GLEAN mRNA 563651 564268 0.993527 + . ID=CGI_10026611; scaffold313 GLEAN mRNA 565571 565984 0.575457 - . ID=CGI_10026612; scaffold313 GLEAN promoter 565985 566984 0.575457 - . ID=CGI_10026612; scaffold313 TRF Tandem_Repeat 573621 573674 90 + . . scaffold313 TRF Tandem_Repeat 575258 575308 102 + . . scaffold313 WUBlastX DNA_Zator 576816 577166 29 - . . scaffold313 WUBlastX DNA_Zator 576906 577157 56 - . . scaffold313 WUBlastX DNA 577002 577517 31 - . . scaffold313 WUBlastX DNA_Zator 577269 577508 43 - . . scaffold313 WUBlastX DNA_Zator 577378 577914 85 - . . scaffold313 WUBlastX DNA_Zator 577567 577920 172 - . . scaffold313 WUBlastX DNA_Zator 577884 578258 149 - . . scaffold313 WUBlastX DNA_Zator 578260 579057 242 - . . scaffold313 TRF Tandem_Repeat 585001 585043 86 + . . scaffold313 WUBlastX DNA_Harbinger 591746 591904 84 - . . scaffold313 WUBlastX DNA_IS4EU 606738 606872 32 + . . scaffold313 WUBlastX DNA_Kolobok-IS4 606908 607186 96 + . . scaffold313 WUBlastX DNA_IS4EU 610553 610903 119 + . . scaffold313 WUBlastX DNA_IS4EU 611052 611348 70 - . . scaffold313 WUBlastX DNA_Kolobok-IS4 611354 611683 109 - . . scaffold313 GLEAN mRNA 612366 622273 0.647784 - . ID=CGI_10026614; scaffold313 WUBlastX DNA_En-Spm 614356 614649 47 - . . scaffold313 WUBlastX DNA_En-Spm 614440 614646 67 - . . scaffold313 WUBlastX DNA_En-Spm 614518 614643 74 - . . scaffold313 WUBlastX DNA_En-Spm 614834 614965 91 - . . scaffold313 WUBlastX DNA_En-Spm 614837 615004 70 - . . scaffold313 WUBlastX DNA_En-Spm 614837 615205 64 - . . scaffold313 WUBlastX DNA_En-Spm 615204 615356 67 - . . scaffold313 TRF Tandem_Repeat 619507 619545 60 + . . scaffold313 GLEAN promoter 622274 623273 0.647784 - . ID=CGI_10026614; scaffold313 TRF Tandem_Repeat 626009 626047 78 + . . scaffold313 TRF Tandem_Repeat 626868 626954 86 + . . scaffold313 TRF Tandem_Repeat 629872 630036 181 + . . scaffold313 GLEAN promoter 635752 636751 0.650997 + . ID=CGI_10026615; scaffold313 GLEAN mRNA 636752 638380 0.650997 + . ID=CGI_10026615; scaffold313 WUBlastX LTR_Ngaro 638520 638711 32 + . . scaffold313 WUBlastX LTR_Ngaro 638690 638953 112 + . . scaffold313 WUBlastX LTR_Ngaro 638705 639091 72 + . . scaffold313 WUBlastX LTR_Ngaro 639210 640799 1011 + . . scaffold313 WUBlastX LTR_Ngaro 640688 641002 47 + . . scaffold313 WUBlastX LTR_Ngaro 640989 641660 302 + . . scaffold313 WUBlastX LTR_Ngaro 646912 647094 146 + . . scaffold313 WUBlastX LTR_Ngaro 647081 647359 175 + . . scaffold313 WUBlastX LTR_Ngaro 647317 647730 27 + . . scaffold313 WUBlastX LTR_Ngaro 647362 647601 67 + . . scaffold313 GLEAN mRNA 650153 651052 1 - . ID=CGI_10026616; scaffold313 GLEAN promoter 651053 652052 1 - . ID=CGI_10026616; scaffold313 TRF Tandem_Repeat 659332 659371 62 + . . scaffold313 TRF Tandem_Repeat 660083 660116 52 + . . scaffold313 TRF Tandem_Repeat 664465 664507 86 + . . scaffold313 TRF Tandem_Repeat 664837 664925 97 + . . scaffold313 TRF Tandem_Repeat 664838 664952 84 + . . scaffold313 TRF Tandem_Repeat 665392 665523 77 + . . scaffold313 GLEAN mRNA 666548 675859 1 - . ID=CGI_10026617; scaffold313 TRF Tandem_Repeat 667345 667658 479 + . . scaffold313 TRF Tandem_Repeat 668284 668530 399 + . . scaffold313 TRF Tandem_Repeat 671201 672032 1527 + . . scaffold313 GLEAN promoter 675860 676859 1 - . ID=CGI_10026617; scaffold313 WUBlastX LINE_RTE-X 676192 676593 46 + . . scaffold313 WUBlastX LINE_RTE-X 676243 676581 72 + . . scaffold313 WUBlastX LINE_RTE-X 676625 676732 23 + . . scaffold313 WUBlastX LINE_RTE-X 676652 676846 27 + . . scaffold313 WUBlastX LINE_RTE-X 676652 676702 47 + . . scaffold313 GLEAN mRNA 678155 687721 0.369345 - . ID=CGI_10026618; scaffold313 WUBlastX LINE_R2-Hero 678458 678523 24 + . . scaffold313 WUBlastX LINE_R2-Hero 679149 679682 164 + . . scaffold313 TRF Tandem_Repeat 679904 680548 888 + . . scaffold313 TRF Tandem_Repeat 680421 680509 52 + . . scaffold313 TRF Tandem_Repeat 684080 684499 687 + . . scaffold313 TRF Tandem_Repeat 684080 684499 691 + . . scaffold313 GLEAN promoter 687722 688721 0.369345 - . ID=CGI_10026618; scaffold313 GLEAN mRNA 687735 688014 0.651135 - . ID=CGI_10026619; scaffold313 GLEAN promoter 688015 689014 0.651135 - . ID=CGI_10026619; scaffold313 GLEAN promoter 692847 693846 0.742187 + . ID=CGI_10026620; scaffold313 GLEAN mRNA 693847 734575 0.742187 + . ID=CGI_10026620; scaffold313 TRF Tandem_Repeat 695662 695901 300 + . . scaffold313 TRF Tandem_Repeat 696433 696565 239 + . . scaffold313 TRF Tandem_Repeat 709807 709851 90 + . . scaffold313 GLEAN mRNA 709949 712050 0.998692 - . ID=CGI_10026621; scaffold313 GLEAN promoter 712051 713050 0.998692 - . ID=CGI_10026621; scaffold313 TRF Tandem_Repeat 712695 712948 499 + . . scaffold313 TRF Tandem_Repeat 716060 716194 99 + . . scaffold313 TRF Tandem_Repeat 722448 722485 67 + . . scaffold313 GLEAN promoter 733660 734659 0.452737 + . ID=CGI_10026622; scaffold313 GLEAN mRNA 734660 773846 0.452737 + . ID=CGI_10026622; scaffold313 TRF Tandem_Repeat 741706 741802 176 + . . scaffold313 GLEAN mRNA 742694 747125 1 - . ID=CGI_10026623; scaffold313 GLEAN promoter 747126 748125 1 - . ID=CGI_10026623; scaffold313 TRF Tandem_Repeat 750804 750851 96 + . . scaffold313 WUBlastX DNA_Crypton 758321 759307 88 + . . scaffold313 WUBlastX DNA_Crypton 758555 759139 123 + . . scaffold313 TRF Tandem_Repeat 762072 762417 461 + . . scaffold313 TRF Tandem_Repeat 762072 762570 615 + . . scaffold313 TRF Tandem_Repeat 762072 762570 572 + . . scaffold313 TRF Tandem_Repeat 762414 762570 221 + . . scaffold313 TRF Tandem_Repeat 769208 769455 406 + . . scaffold313 WUBlastX LINE_L1-Tx1 782351 782518 71 + . . scaffold313 TRF Tandem_Repeat 786778 786832 110 + . . scaffold313 GLEAN mRNA 796451 824376 0.498657 - . ID=CGI_10026624; scaffold313 GLEAN promoter 809674 810673 1 + . ID=CGI_10026625; scaffold313 GLEAN mRNA 810674 812843 1 + . ID=CGI_10026625; scaffold313 GLEAN promoter 823096 824095 0.991151 + . ID=CGI_10026626; scaffold313 GLEAN mRNA 824096 825412 0.991151 + . ID=CGI_10026626; scaffold313 GLEAN promoter 824377 825376 0.498657 - . ID=CGI_10026624; scaffold313 GLEAN mRNA 834185 837741 0.99973 - . ID=CGI_10026627; scaffold313 TRF Tandem_Repeat 835728 835860 136 + . . scaffold313 GLEAN promoter 837742 838741 0.99973 - . ID=CGI_10026627; scaffold313 TRF Tandem_Repeat 844942 845002 95 + . . scaffold313 TRF Tandem_Repeat 868197 868247 102 + . . scaffold313 TRF Tandem_Repeat 917659 917827 183 + . . scaffold313 WUBlastX LINE_Penelope 920906 921025 22 + . . scaffold313 TRF Tandem_Repeat 924277 924703 386 + . . scaffold313 TRF Tandem_Repeat 924277 924703 435 + . . scaffold313 TRF Tandem_Repeat 924277 924717 479 + . . scaffold313 TRF Tandem_Repeat 926274 926427 197 + . . scaffold313 TRF Tandem_Repeat 936837 936888 104 + . . scaffold313 GLEAN promoter 943559 944558 0.998141 + . ID=CGI_10026628; scaffold313 GLEAN mRNA 944559 953827 0.998141 + . ID=CGI_10026628; scaffold313 TRF Tandem_Repeat 944957 945015 118 + . . scaffold313 TRF Tandem_Repeat 947556 947617 124 + . . scaffold313 GLEAN promoter 959141 960140 0.950119 + . ID=CGI_10026629; scaffold313 GLEAN mRNA 960141 974099 0.950119 + . ID=CGI_10026629; scaffold313 TRF Tandem_Repeat 960902 960943 84 + . . scaffold313 TRF Tandem_Repeat 964603 964652 100 + . . scaffold313 TRF Tandem_Repeat 965262 965293 64 + . . scaffold313 TRF Tandem_Repeat 965662 965742 162 + . . scaffold313 GLEAN promoter 973977 974976 0.959616 + . ID=CGI_10026630; scaffold313 GLEAN mRNA 974977 977776 0.959616 + . ID=CGI_10026630; scaffold313 TRF Tandem_Repeat 981556 981606 102 + . . scaffold313 GLEAN promoter 982421 983420 0.701437 + . ID=CGI_10026631; scaffold313 GLEAN mRNA 983421 989426 0.701437 + . ID=CGI_10026631; scaffold313 TRF Tandem_Repeat 986435 986475 73 + . . scaffold313 GLEAN mRNA 995291 1012456 0.826791 - . ID=CGI_10026632; scaffold313 TRF Tandem_Repeat 1008225 1008271 51 + . . scaffold313 GLEAN promoter 1012457 1013456 0.826791 - . ID=CGI_10026632; scaffold313 GLEAN mRNA 1014206 1026476 0.354197 - . ID=CGI_10026633; scaffold313 TRF Tandem_Repeat 1018041 1018093 106 + . . scaffold313 WUBlastX LINE_L1-Tx1 1018790 1019044 41 - . . scaffold313 WUBlastX LINE_L1-Tx1 1018877 1019080 52 - . . scaffold313 WUBlastX LINE_L1-Tx1 1019050 1019100 20 - . . scaffold313 WUBlastX LINE_L1-Tx1 1019225 1019416 71 - . . scaffold313 WUBlastX LTR_Ngaro 1022887 1023069 30 - . . scaffold313 WUBlastX LTR_Ngaro 1023469 1023642 27 - . . scaffold313 WUBlastX LTR_Ngaro 1023659 1024000 111 - . . scaffold313 WUBlastX LTR_Ngaro 1024006 1024290 99 - . . scaffold313 WUBlastX LTR_Ngaro 1024363 1024755 127 - . . scaffold313 TRF Tandem_Repeat 1025299 1025352 72 + . . scaffold313 GLEAN promoter 1026477 1027476 0.354197 - . ID=CGI_10026633; scaffold313 WUBlastX LINE_RTE-X 1036924 1037385 21 - . . scaffold313 WUBlastX LINE_RTE-BovB 1037095 1037385 81 - . . scaffold313 TRF Tandem_Repeat 1037411 1037621 237 + . . scaffold313 GLEAN mRNA 1043074 1050737 0.531521 - . ID=CGI_10026634; scaffold313 TRF Tandem_Repeat 1050358 1050398 82 + . . scaffold313 GLEAN promoter 1050738 1051737 0.531521 - . ID=CGI_10026634; scaffold313 TRF Tandem_Repeat 1054690 1054719 60 + . . scaffold313 TRF Tandem_Repeat 1055228 1055259 64 + . . scaffold313 TRF Tandem_Repeat 1055959 1056028 104 + . . scaffold313 GLEAN promoter 1056746 1057745 0.5 + . ID=CGI_10026635; scaffold313 GLEAN mRNA 1057746 1059168 0.5 + . ID=CGI_10026635; scaffold313 TRF Tandem_Repeat 1059218 1059250 66 + . . scaffold313 GLEAN mRNA 1062555 1070149 0.996796 - . ID=CGI_10026636; scaffold313 GLEAN promoter 1070150 1071149 0.996796 - . ID=CGI_10026636; scaffold313 TRF Tandem_Repeat 1074202 1074262 122 + . . scaffold313 GLEAN promoter 1080823 1081822 0.999415 + . ID=CGI_10026637; scaffold313 GLEAN mRNA 1081823 1087130 0.999415 + . ID=CGI_10026637; scaffold313 TRF Tandem_Repeat 1086122 1086166 90 + . . scaffold313 GLEAN promoter 1090292 1091291 0.371399 + . ID=CGI_10026638; scaffold313 GLEAN mRNA 1091292 1101888 0.371399 + . ID=CGI_10026638; scaffold313 TRF Tandem_Repeat 1100324 1100348 50 + . . scaffold313 TRF Tandem_Repeat 1102369 1102421 106 + . . scaffold313 TRF Tandem_Repeat 1102771 1102820 100 + . . scaffold313 GLEAN promoter 1104797 1105796 0.999895 + . ID=CGI_10026639; scaffold313 GLEAN mRNA 1105797 1139003 0.999895 + . ID=CGI_10026639; scaffold313 TRF Tandem_Repeat 1115559 1115608 100 + . . scaffold313 TRF Tandem_Repeat 1116307 1116350 88 + . . scaffold313 TRF Tandem_Repeat 1126120 1126199 115 + . . scaffold313 TRF Tandem_Repeat 1127123 1127334 316 + . . scaffold313 GLEAN mRNA 1139830 1142218 0.91163 - . ID=CGI_10026640; scaffold313 WUBlastX LTR_Pao 1141249 1141578 61 - . . scaffold313 WUBlastX LTR_Pao 1141372 1141713 55 - . . scaffold313 GLEAN promoter 1141905 1142904 0.937426 + . ID=CGI_10026641; scaffold313 GLEAN promoter 1142219 1143218 0.91163 - . ID=CGI_10026640; scaffold313 GLEAN mRNA 1142905 1167862 0.937426 + . ID=CGI_10026641; scaffold313 TRF Tandem_Repeat 1159080 1159121 75 + . . scaffold313 TRF Tandem_Repeat 1167844 1167994 293 + . . scaffold313 GLEAN promoter 1168107 1169106 0.998905 + . ID=CGI_10026642; scaffold313 GLEAN mRNA 1169107 1178878 0.998905 + . ID=CGI_10026642; scaffold313 GLEAN promoter 1179096 1180095 0.492755 + . ID=CGI_10026643; scaffold313 GLEAN mRNA 1180096 1191800 0.492755 + . ID=CGI_10026643; scaffold313 WUBlastX LINE_RTE-X 1188840 1189091 43 - . . scaffold313 WUBlastX LINE_RTE-X 1189414 1190073 36 - . . scaffold313 WUBlastX LINE_RTE-X 1189761 1189901 66 - . . scaffold313 WUBlastX LINE_RTE-X 1189906 1190025 41 - . . scaffold313 WUBlastX LINE_RTE-X 1190150 1190269 34 - . . scaffold313 WUBlastX LINE_RTE-X 1190177 1190278 42 - . . scaffold313 WUBlastX LINE_RTE-X 1190183 1190257 49 - . . scaffold31308 TRF Tandem_Repeat 5657 5739 73 + . . scaffold31308 WUBlastX LTR_Ngaro 8093 8533 76 - . . scaffold31308 WUBlastX LTR_Ngaro 8117 8482 159 - . . scaffold31308 WUBlastX LTR_Ngaro 8538 8960 53 - . . scaffold31308 WUBlastX LTR_Ngaro 8670 8960 90 - . . scaffold31308 WUBlastX LTR_Ngaro 8715 8960 127 - . . scaffold31308 WUBlastX LTR_Ngaro 8769 8960 135 - . . scaffold31320 TRF Tandem_Repeat 122 188 71 + . . scaffold31320 TRF Tandem_Repeat 610 663 108 + . . scaffold31320 TRF Tandem_Repeat 3485 3645 234 + . . scaffold31320 WUBlastX LINE_RTE-X 6948 7799 236 + . . scaffold31330 GLEAN mRNA 2924 8145 1 - . ID=CGI_10000733; scaffold31330 GLEAN promoter 8146 9145 1 - . ID=CGI_10000733; scaffold31334 GLEAN promoter 1 84 0.999996 + . ID=CGI_10000734; scaffold31334 GLEAN mRNA 85 1065 0.999996 + . ID=CGI_10000734; scaffold31334 WUBlastX DNA_Sola 235 1062 182 + . . scaffold31334 TRF Tandem_Repeat 4037 4187 139 + . . scaffold31334 TRF Tandem_Repeat 6104 6474 514 + . . scaffold31348 GLEAN mRNA 586 1362 0.69447 - . ID=CGI_10000737; scaffold31348 GLEAN promoter 1363 2362 0.69447 - . ID=CGI_10000737; scaffold31348 GLEAN mRNA 1402 9130 0.999998 - . ID=CGI_10000738; scaffold31348 GLEAN promoter 9131 9325 0.999998 - . ID=CGI_10000738; scaffold31376 GLEAN mRNA 474 1867 0.691028 - . ID=CGI_10000741; scaffold31376 GLEAN promoter 1868 2867 0.691028 - . ID=CGI_10000741; scaffold31378 TRF Tandem_Repeat 199 262 75 + . . scaffold31378 TRF Tandem_Repeat 1658 1701 61 + . . scaffold31378 TRF Tandem_Repeat 1658 1710 52 + . . scaffold31378 WUBlastX LINE_L2 6088 6702 246 + . . scaffold31382 GLEAN mRNA 6169 6891 0.573096 - . ID=CGI_10000732; scaffold31382 WUBlastX LTR_Pao 6178 6279 112 + . . scaffold31382 WUBlastX LTR_Pao 6181 6306 110 + . . scaffold31382 GLEAN promoter 6892 7891 0.573096 - . ID=CGI_10000732; scaffold31388 GLEAN mRNA 4345 8298 0.644139 - . ID=CGI_10000740; scaffold31388 WUBlastX DNA_Zator 4357 4668 113 - . . scaffold31388 WUBlastX DNA_Zator 4844 5029 33 - . . scaffold31388 WUBlastX DNA_Zator 5109 5339 82 - . . scaffold31388 WUBlastX DNA_Zator 5151 5375 29 - . . scaffold31388 WUBlastX DNA_Zator 5648 6169 207 - . . scaffold31388 WUBlastX DNA_Zator 6145 7962 645 - . . scaffold31388 GLEAN promoter 8299 9298 0.644139 - . ID=CGI_10000740; scaffold314 TRF Tandem_Repeat 11058 11124 89 + . . scaffold314 TRF Tandem_Repeat 11061 11115 65 + . . scaffold314 TRF Tandem_Repeat 11603 11686 118 + . . scaffold314 TRF Tandem_Repeat 36502 36528 54 + . . scaffold314 GLEAN promoter 54719 55718 0.999669 + . ID=CGI_10007542; scaffold314 GLEAN mRNA 55719 70493 0.999669 + . ID=CGI_10007542; scaffold314 TRF Tandem_Repeat 59680 59745 132 + . . scaffold314 TRF Tandem_Repeat 65373 65410 76 + . . scaffold314 TRF Tandem_Repeat 73499 73553 110 + . . scaffold314 TRF Tandem_Repeat 79352 79935 749 + . . scaffold314 WUBlastX LTR_Gypsy 80862 81575 27 + . . scaffold314 WUBlastX LTR_Gypsy 80862 81035 62 + . . scaffold314 WUBlastX LTR_Gypsy 80862 81116 57 + . . scaffold314 WUBlastX LTR_Gypsy 81375 81563 29 + . . scaffold314 WUBlastX LTR_Gypsy 81431 81715 27 + . . scaffold314 WUBlastX LTR_Gypsy 82454 82525 23 + . . scaffold314 WUBlastX LTR_Gypsy 82454 82501 24 + . . scaffold314 GLEAN mRNA 84039 88002 0.491167 - . ID=CGI_10007543; scaffold314 TRF Tandem_Repeat 85865 86634 1004 + . . scaffold314 GLEAN promoter 88003 89002 0.491167 - . ID=CGI_10007543; scaffold314 TRF Tandem_Repeat 91467 91568 99 + . . scaffold314 GLEAN mRNA 98987 102975 0.996071 - . ID=CGI_10007544; scaffold314 TRF Tandem_Repeat 101231 102177 1316 + . . scaffold314 TRF Tandem_Repeat 102311 102340 51 + . . scaffold314 GLEAN promoter 102976 103975 0.996071 - . ID=CGI_10007544; scaffold314 WUBlastX LINE_Penelope 111710 112156 73 + . . scaffold314 WUBlastX LINE_Penelope 111803 113500 724 + . . scaffold314 TRF Tandem_Repeat 116964 117006 77 + . . scaffold314 TRF Tandem_Repeat 126619 126688 131 + . . scaffold314 TRF Tandem_Repeat 139600 139642 54 + . . scaffold314 WUBlastX LTR_Ngaro 140395 140700 89 + . . scaffold314 WUBlastX LTR_Ngaro 140880 141218 84 + . . scaffold314 WUBlastX LTR_Ngaro 140880 141305 59 + . . scaffold314 GLEAN mRNA 156611 160538 0.887745 - . ID=CGI_10007545; scaffold314 GLEAN promoter 160539 161538 0.887745 - . ID=CGI_10007545; scaffold314 GLEAN mRNA 167881 171718 0.999972 - . ID=CGI_10007546; scaffold314 GLEAN promoter 171719 172718 0.999972 - . ID=CGI_10007546; scaffold314 GLEAN mRNA 172861 173127 0.999372 - . ID=CGI_10007547; scaffold314 GLEAN promoter 173128 174127 0.999372 - . ID=CGI_10007547; scaffold314 GLEAN promoter 174789 175788 0.777732 + . ID=CGI_10007548; scaffold314 GLEAN mRNA 175789 180107 0.777732 + . ID=CGI_10007548; scaffold314 TRF Tandem_Repeat 178552 179052 306 + . . scaffold314 GLEAN promoter 180258 181257 1 + . ID=CGI_10007549; scaffold314 GLEAN mRNA 181258 183497 1 + . ID=CGI_10007549; scaffold31484 GLEAN mRNA 7305 8246 1 - . ID=CGI_10000754; scaffold31484 GLEAN promoter 8247 9246 1 - . ID=CGI_10000754; scaffold31484 WUBlastX RC_Helitron 8771 9340 100 - . . scaffold31484 WUBlastX RC_Helitron 9352 9591 101 - . . scaffold315 TRF Tandem_Repeat 17012 17055 72 + . . scaffold315 TRF Tandem_Repeat 25623 25806 244 + . . scaffold315 TRF Tandem_Repeat 29084 29853 780 + . . scaffold315 GLEAN promoter 29489 30488 0.901071 + . ID=CGI_10020398; scaffold315 WUBlastX DNA_IS4EU 30033 30362 42 + . . scaffold315 WUBlastX DNA_Kolobok-IS4 30336 31724 346 + . . scaffold315 GLEAN mRNA 30489 37096 0.901071 + . ID=CGI_10020398; scaffold315 WUBlastX DNA_IS4EU 30717 31721 601 + . . scaffold315 GLEAN promoter 37585 38584 0.984467 + . ID=CGI_10020399; scaffold315 GLEAN mRNA 38585 42231 0.984467 + . ID=CGI_10020399; scaffold315 TRF Tandem_Repeat 38949 39098 86 + . . scaffold315 WUBlastX DNA_Kolobok 39367 39582 92 + . . scaffold315 WUBlastX DNA_Kolobok 40660 40935 101 + . . scaffold315 WUBlastX DNA_Kolobok 41562 41783 61 - . . scaffold315 WUBlastX DNA_Kolobok 41568 41855 30 - . . scaffold315 GLEAN mRNA 42015 49590 0.99999 - . ID=CGI_10020400; scaffold315 TRF Tandem_Repeat 47411 47445 52 + . . scaffold315 GLEAN promoter 49591 50590 0.99999 - . ID=CGI_10020400; scaffold315 WUBlastX LTR_Gypsy 49612 50805 446 + . . scaffold315 WUBlastX LTR_Gypsy 49876 50805 659 + . . scaffold315 WUBlastX LTR_Gypsy 51691 51879 37 + . . scaffold315 WUBlastX LTR_Gypsy 51751 51879 75 + . . scaffold315 WUBlastX LTR_Gypsy 51751 51939 57 + . . scaffold315 GLEAN promoter 55311 56310 0.999903 + . ID=CGI_10020401; scaffold315 GLEAN mRNA 56311 57190 0.999903 + . ID=CGI_10020401; scaffold315 GLEAN promoter 56515 57514 0.263623 + . ID=CGI_10020402; scaffold315 GLEAN mRNA 57515 60799 0.263623 + . ID=CGI_10020402; scaffold315 GLEAN mRNA 64911 81459 0.999323 - . ID=CGI_10020403; scaffold315 TRF Tandem_Repeat 66136 66603 690 + . . scaffold315 TRF Tandem_Repeat 71431 71469 78 + . . scaffold315 TRF Tandem_Repeat 75725 75786 108 + . . scaffold315 TRF Tandem_Repeat 75840 75931 125 + . . scaffold315 GLEAN promoter 81460 82459 0.999323 - . ID=CGI_10020403; scaffold315 GLEAN promoter 85021 86020 1 + . ID=CGI_10020404; scaffold315 GLEAN mRNA 86021 86479 1 + . ID=CGI_10020404; scaffold315 GLEAN promoter 93531 94530 0.966231 + . ID=CGI_10020405; scaffold315 GLEAN mRNA 94531 133101 0.966231 + . ID=CGI_10020405; scaffold315 TRF Tandem_Repeat 100927 100990 128 + . . scaffold315 TRF Tandem_Repeat 107716 107758 68 + . . scaffold315 TRF Tandem_Repeat 123785 123879 181 + . . scaffold315 TRF Tandem_Repeat 124053 125736 1202 + . . scaffold315 TRF Tandem_Repeat 124115 125142 941 + . . scaffold315 TRF Tandem_Repeat 124193 124612 188 + . . scaffold315 TRF Tandem_Repeat 124301 125783 1559 + . . scaffold315 TRF Tandem_Repeat 124301 125827 1667 + . . scaffold315 TRF Tandem_Repeat 124614 125783 552 + . . scaffold315 TRF Tandem_Repeat 138873 138902 60 + . . scaffold315 GLEAN promoter 140717 141716 0.961863 + . ID=CGI_10020406; scaffold315 TRF Tandem_Repeat 141232 141356 88 + . . scaffold315 GLEAN mRNA 141717 145396 0.961863 + . ID=CGI_10020406; scaffold315 GLEAN promoter 147588 148587 1 + . ID=CGI_10020407; scaffold315 GLEAN mRNA 148588 150517 1 + . ID=CGI_10020407; scaffold315 GLEAN mRNA 153779 158390 0.999676 - . ID=CGI_10020408; scaffold315 GLEAN promoter 158391 159390 0.999676 - . ID=CGI_10020408; scaffold315 GLEAN promoter 160282 161281 0.921528 + . ID=CGI_10020409; scaffold315 GLEAN mRNA 161282 186461 0.921528 + . ID=CGI_10020409; scaffold315 TRF Tandem_Repeat 167714 167946 226 + . . scaffold315 TRF Tandem_Repeat 176242 177041 681 + . . scaffold315 TRF Tandem_Repeat 178391 178436 67 + . . scaffold315 TRF Tandem_Repeat 178582 178637 103 + . . scaffold315 TRF Tandem_Repeat 178914 178951 51 + . . scaffold315 TRF Tandem_Repeat 183563 185075 1765 + . . scaffold315 TRF Tandem_Repeat 190564 190754 308 + . . scaffold315 GLEAN promoter 197637 198636 0.999922 + . ID=CGI_10020410; scaffold315 GLEAN mRNA 198637 213809 0.999922 + . ID=CGI_10020410; scaffold315 GLEAN mRNA 203708 204118 0.999064 - . ID=CGI_10020411; scaffold315 GLEAN promoter 204119 205118 0.999064 - . ID=CGI_10020411; scaffold315 WUBlastX LTR_Pao 204209 204892 47 - . . scaffold315 WUBlastX LTR_Pao 204386 204916 64 - . . scaffold315 WUBlastX LTR_Pao 204542 204925 101 - . . scaffold315 GLEAN promoter 217884 218883 0.646952 + . ID=CGI_10020412; scaffold315 GLEAN mRNA 218884 229530 0.646952 + . ID=CGI_10020412; scaffold315 TRF Tandem_Repeat 231295 231351 96 + . . scaffold315 WUBlastX LINE_RTE-BovB 236624 237460 118 - . . scaffold315 TRF Tandem_Repeat 251165 251312 149 + . . scaffold315 TRF Tandem_Repeat 257004 257076 58 + . . scaffold315 GLEAN promoter 262487 263486 0.36515 + . ID=CGI_10020413; scaffold315 GLEAN mRNA 263487 278113 0.36515 + . ID=CGI_10020413; scaffold315 TRF Tandem_Repeat 269550 269576 54 + . . scaffold315 TRF Tandem_Repeat 274967 275017 66 + . . scaffold315 GLEAN promoter 279498 280497 1 + . ID=CGI_10020414; scaffold315 GLEAN mRNA 280498 281794 1 + . ID=CGI_10020414; scaffold315 GLEAN promoter 281273 282272 1 + . ID=CGI_10020415; scaffold315 GLEAN mRNA 282273 283415 1 + . ID=CGI_10020415; scaffold315 GLEAN promoter 291702 292701 0.862432 + . ID=CGI_10020416; scaffold315 GLEAN mRNA 292702 296461 0.862432 + . ID=CGI_10020416; scaffold315 GLEAN promoter 295779 296778 0.935948 + . ID=CGI_10020417; scaffold315 GLEAN mRNA 296779 330061 0.935948 + . ID=CGI_10020417; scaffold315 TRF Tandem_Repeat 301340 301383 88 + . . scaffold315 WUBlastX LINE_RTE-BovB 304262 304939 38 + . . scaffold315 WUBlastX LINE_L2 304265 304489 77 + . . scaffold315 WUBlastX LINE_RTE-X 304850 304948 43 + . . scaffold315 WUBlastX LINE_RTE-X 304970 305173 24 + . . scaffold315 WUBlastX LINE_RTE-X 305057 305173 30 + . . scaffold315 WUBlastX LINE_RTE-X 305069 305290 24 + . . scaffold315 WUBlastX LINE_RTE-X 317905 318000 21 + . . scaffold315 WUBlastX LINE_RTE-X 318868 318981 42 + . . scaffold315 WUBlastX LINE_RTE-X 319046 319144 26 + . . scaffold315 TRF Tandem_Repeat 319637 319661 50 + . . scaffold315 TRF Tandem_Repeat 327128 327197 140 + . . scaffold315 GLEAN mRNA 330688 332217 0.632492 - . ID=CGI_10020418; scaffold315 GLEAN promoter 332218 333217 0.632492 - . ID=CGI_10020418; scaffold315 TRF Tandem_Repeat 332974 333067 109 + . . scaffold315 TRF Tandem_Repeat 333885 333968 96 + . . scaffold315 GLEAN promoter 333905 334904 0.987517 + . ID=CGI_10020419; scaffold315 GLEAN mRNA 334905 352472 0.987517 + . ID=CGI_10020419; scaffold315 TRF Tandem_Repeat 339300 339655 520 + . . scaffold315 GLEAN mRNA 345361 359183 0.433545 - . ID=CGI_10020420; scaffold315 TRF Tandem_Repeat 346508 347042 597 + . . scaffold315 TRF Tandem_Repeat 351580 351616 74 + . . scaffold315 GLEAN promoter 359184 360183 0.433545 - . ID=CGI_10020420; scaffold315 GLEAN mRNA 359921 360907 0.999991 - . ID=CGI_10020421; scaffold315 GLEAN promoter 360908 361907 0.999991 - . ID=CGI_10020421; scaffold315 GLEAN promoter 361464 362463 0.985284 + . ID=CGI_10020422; scaffold315 GLEAN mRNA 362464 389768 0.985284 + . ID=CGI_10020422; scaffold315 GLEAN mRNA 391071 395852 1 - . ID=CGI_10020424; scaffold315 WUBlastX DNA_hAT 391510 391770 67 - . . scaffold315 WUBlastX DNA_hAT 392013 392138 38 - . . scaffold315 WUBlastX DNA_hAT 392636 392815 58 - . . scaffold315 WUBlastX DNA_hAT 393263 393394 26 - . . scaffold315 WUBlastX DNA_hAT 393576 393671 38 - . . scaffold315 WUBlastX DNA_hAT 395076 395864 427 - . . scaffold315 GLEAN promoter 395853 396852 1 - . ID=CGI_10020424; scaffold315 WUBlastX LINE_CR1-L2 398416 398532 41 + . . scaffold315 WUBlastX LINE_CR1-L2 398640 398783 52 + . . scaffold315 WUBlastX LINE_L2 398788 398910 36 + . . scaffold315 WUBlastX LINE_CR1-L2 398800 398955 21 + . . scaffold315 GLEAN mRNA 400946 425565 0.999675 - . ID=CGI_10020425; scaffold315 TRF Tandem_Repeat 411584 411753 340 + . . scaffold315 TRF Tandem_Repeat 413119 413584 844 + . . scaffold315 TRF Tandem_Repeat 420773 421734 1538 + . . scaffold315 TRF Tandem_Repeat 421758 421816 82 + . . scaffold315 TRF Tandem_Repeat 421758 421807 55 + . . scaffold315 TRF Tandem_Repeat 421761 421816 67 + . . scaffold315 TRF Tandem_Repeat 421765 421816 59 + . . scaffold315 TRF Tandem_Repeat 422295 422461 325 + . . scaffold315 TRF Tandem_Repeat 425094 425166 69 + . . scaffold315 GLEAN promoter 425566 426565 0.999675 - . ID=CGI_10020425; scaffold315 GLEAN promoter 426034 427033 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 426962 427657 567 + . . scaffold315 GLEAN mRNA 427034 448129 0.999057 + . ID=CGI_10020426; scaffold315 WUBlastX DNA_Harbinger 427660 427821 121 + . . scaffold315 WUBlastX DNA_Harbinger 427821 428171 262 + . . scaffold315 WUBlastX DNA_Harbinger 428180 428236 24 + . . scaffold315 WUBlastX DNA_Harbinger 428897 429316 66 - . . scaffold315 WUBlastX DNA_Harbinger 429650 430009 40 - . . scaffold315 GLEAN mRNA 431396 446813 0.999027 - . ID=CGI_10020427; scaffold315 TRF Tandem_Repeat 444438 444490 106 + . . scaffold315 TRF Tandem_Repeat 444925 445227 457 + . . scaffold315 TRF Tandem_Repeat 444925 445324 510 + . . scaffold315 GLEAN promoter 446814 447813 0.999027 - . ID=CGI_10020427; scaffold315 GLEAN mRNA 453051 462244 0.998504 - . ID=CGI_10020428; scaffold315 GLEAN promoter 462245 463244 0.998504 - . ID=CGI_10020428; scaffold315 TRF Tandem_Repeat 464965 464999 70 + . . scaffold315 TRF Tandem_Repeat 466771 466816 92 + . . scaffold315 WUBlastX LTR_Pao 470807 471277 247 - . . scaffold315 WUBlastX LTR_Pao 471263 473236 1004 - . . scaffold315 WUBlastX LTR_Pao 471266 473698 946 - . . scaffold315 GLEAN promoter 475395 476394 0.558407 + . ID=CGI_10020429; scaffold315 GLEAN mRNA 476395 480733 0.558407 + . ID=CGI_10020429; scaffold315 GLEAN mRNA 483272 485643 0.994136 - . ID=CGI_10020430; scaffold315 GLEAN promoter 485644 486643 0.994136 - . ID=CGI_10020430; scaffold315 GLEAN mRNA 486344 494675 1 - . ID=CGI_10020431; scaffold315 TRF Tandem_Repeat 490693 490728 72 + . . scaffold315 GLEAN promoter 494676 495675 1 - . ID=CGI_10020431; scaffold315 GLEAN mRNA 494772 498200 1 - . ID=CGI_10020432; scaffold315 GLEAN promoter 497248 498247 0.999027 + . ID=CGI_10020433; scaffold315 GLEAN promoter 498201 499200 1 - . ID=CGI_10020432; scaffold315 GLEAN mRNA 498248 518855 0.999027 + . ID=CGI_10020433; scaffold315 GLEAN mRNA 502762 504121 0.775709 - . ID=CGI_10020434; scaffold315 GLEAN promoter 504122 505121 0.775709 - . ID=CGI_10020434; scaffold315 TRF Tandem_Repeat 504187 504326 154 + . . scaffold315 TRF Tandem_Repeat 505095 505387 289 + . . scaffold315 TRF Tandem_Repeat 505097 505399 282 + . . scaffold315 TRF Tandem_Repeat 506064 506323 279 + . . scaffold315 TRF Tandem_Repeat 506064 506323 333 + . . scaffold315 TRF Tandem_Repeat 506095 506325 315 + . . scaffold315 WUBlastX LINE_RTE-X 508604 509698 46 - . . scaffold315 WUBlastX LINE_RTE-X 508607 509386 96 - . . scaffold315 TRF Tandem_Repeat 512599 512640 84 + . . scaffold315 TRF Tandem_Repeat 512842 513004 242 + . . scaffold315 GLEAN promoter 519869 520868 1 + . ID=CGI_10020435; scaffold315 GLEAN mRNA 520869 522570 1 + . ID=CGI_10020435; scaffold315 TRF Tandem_Repeat 521258 521295 76 + . . scaffold315 GLEAN promoter 523051 524050 0.633695 + . ID=CGI_10020436; scaffold315 GLEAN mRNA 524051 534406 0.633695 + . ID=CGI_10020436; scaffold315 TRF Tandem_Repeat 528811 528948 80 + . . scaffold315 TRF Tandem_Repeat 547829 547887 109 + . . scaffold315 TRF Tandem_Repeat 549510 549554 90 + . . scaffold315 GLEAN promoter 549895 550894 1 + . ID=CGI_10020437; scaffold315 GLEAN mRNA 550895 569665 1 + . ID=CGI_10020437; scaffold315 TRF Tandem_Repeat 579826 579929 54 + . . scaffold315 TRF Tandem_Repeat 580824 580952 83 + . . scaffold315 GLEAN promoter 581084 582083 0.999933 + . ID=CGI_10020438; scaffold315 TRF Tandem_Repeat 581837 581863 54 + . . scaffold315 GLEAN mRNA 582084 585519 0.999933 + . ID=CGI_10020438; scaffold315 GLEAN mRNA 587468 591747 1 - . ID=CGI_10020439; scaffold315 GLEAN promoter 591748 592747 1 - . ID=CGI_10020439; scaffold315 GLEAN mRNA 592829 593255 0.593391 - . ID=CGI_10020440; scaffold315 GLEAN promoter 593256 594255 0.593391 - . ID=CGI_10020440; scaffold315 GLEAN promoter 594564 595563 0.999676 + . ID=CGI_10020441; scaffold315 GLEAN mRNA 595564 598799 0.999676 + . ID=CGI_10020441; scaffold315 GLEAN mRNA 602701 614451 1 - . ID=CGI_10020442; scaffold315 TRF Tandem_Repeat 606127 606544 455 + . . scaffold315 TRF Tandem_Repeat 606127 606544 489 + . . scaffold315 TRF Tandem_Repeat 606141 606530 393 + . . scaffold315 TRF Tandem_Repeat 608820 609018 254 + . . scaffold315 GLEAN promoter 613887 614886 0.997518 + . ID=CGI_10020443; scaffold315 GLEAN promoter 614452 615451 1 - . ID=CGI_10020442; scaffold315 GLEAN mRNA 614887 619955 0.997518 + . ID=CGI_10020443; scaffold315 GLEAN mRNA 624063 627853 1 - . ID=CGI_10020444; scaffold315 GLEAN promoter 627854 628853 1 - . ID=CGI_10020444; scaffold315 GLEAN mRNA 633487 636422 1 - . ID=CGI_10020445; scaffold315 GLEAN promoter 636423 637422 1 - . ID=CGI_10020445; scaffold315 GLEAN promoter 637730 638729 1 + . ID=CGI_10020446; scaffold315 GLEAN mRNA 638730 645349 1 + . ID=CGI_10020446; scaffold315 TRF Tandem_Repeat 640212 640249 76 + . . scaffold315 TRF Tandem_Repeat 642941 642979 69 + . . scaffold31514 GLEAN promoter 5212 6211 1 + . ID=CGI_10000759; scaffold31514 GLEAN mRNA 6212 9497 1 + . ID=CGI_10000759; scaffold31534 GLEAN mRNA 1194 3724 1 - . ID=CGI_10000763; scaffold31534 GLEAN promoter 3725 4724 1 - . ID=CGI_10000763; scaffold31538 WUBlastX DNA_Maverick 101 1234 532 - . . scaffold31538 WUBlastX LTR_Gypsy 572 1375 35 - . . scaffold31538 WUBlastX DNA_Maverick 1542 2177 379 + . . scaffold31538 GLEAN mRNA 2778 3774 1 - . ID=CGI_10000764; scaffold31538 TRF Tandem_Repeat 3185 3228 88 + . . scaffold31538 GLEAN promoter 3775 4774 1 - . ID=CGI_10000764; scaffold31538 GLEAN mRNA 4012 9466 0.997845 - . ID=CGI_10000765; scaffold31538 WUBlastX DNA_Maverick 4042 4695 31 - . . scaffold31538 WUBlastX DNA_Maverick 4150 5217 556 - . . scaffold31538 WUBlastX DNA_Maverick 5215 5592 105 - . . scaffold31538 WUBlastX DNA_Maverick 5584 5862 136 - . . scaffold31538 WUBlastX DNA_Maverick 5809 6096 91 - . . scaffold31538 WUBlastX DNA_Maverick 6178 7914 252 - . . scaffold31538 GLEAN promoter 9467 9685 0.997845 - . ID=CGI_10000765; scaffold31556 GLEAN mRNA 4263 8945 1 - . ID=CGI_10000767; scaffold31556 GLEAN promoter 8946 9708 1 - . ID=CGI_10000767; scaffold31560 GLEAN mRNA 1027 1308 0.467083 - . ID=CGI_10000760; scaffold31560 GLEAN promoter 1309 2308 0.467083 - . ID=CGI_10000760; scaffold316 GLEAN mRNA 23 25141 0.301379 - . ID=CGI_10001602; scaffold316 TRF Tandem_Repeat 4022 4240 438 + . . scaffold316 TRF Tandem_Repeat 4238 4285 96 + . . scaffold316 TRF Tandem_Repeat 4396 4969 1148 + . . scaffold316 WUBlastX LTR_Gypsy 16554 16790 49 + . . scaffold316 WUBlastX LTR_Gypsy 16599 16802 66 + . . scaffold316 WUBlastX LTR_Gypsy 16635 16787 67 + . . scaffold316 WUBlastX LTR_Gypsy 16781 17017 76 + . . scaffold316 WUBlastX LTR_Gypsy 16781 17083 60 + . . scaffold316 WUBlastX LTR_Gypsy 16790 17140 40 + . . scaffold316 TRF Tandem_Repeat 24402 24471 140 + . . scaffold316 TRF Tandem_Repeat 24523 24547 50 + . . scaffold316 GLEAN promoter 25142 26141 0.301379 - . ID=CGI_10001602; scaffold31638 GLEAN mRNA 407 8631 0.999939 - . ID=CGI_10000773; scaffold31638 GLEAN promoter 8632 9631 0.999939 - . ID=CGI_10000773; scaffold31660 GLEAN mRNA 1154 5491 0.997677 - . ID=CGI_10000742; scaffold31660 GLEAN promoter 5492 6491 0.997677 - . ID=CGI_10000742; scaffold31680 GLEAN promoter 1009 2008 0.999945 + . ID=CGI_10000776; scaffold31680 GLEAN mRNA 2009 8877 0.999945 + . ID=CGI_10000776; scaffold31684 WUBlastX LINE_L2 1767 2024 51 - . . scaffold31684 WUBlastX LINE_L2 2032 2133 53 - . . scaffold31684 WUBlastX LINE_L2 2138 2242 38 - . . scaffold31684 GLEAN mRNA 6549 7563 1 - . ID=CGI_10000774; scaffold31684 GLEAN promoter 7564 8563 1 - . ID=CGI_10000774; scaffold317 TRF Tandem_Repeat 1195 1232 76 + . . scaffold317 GLEAN promoter 6090 7089 0.990181 + . ID=CGI_10019337; scaffold317 GLEAN mRNA 7090 24632 0.990181 + . ID=CGI_10019337; scaffold317 TRF Tandem_Repeat 7479 7525 94 + . . scaffold317 WUBlastX DNA_Kolobok-Hyd 7841 8005 20 + . . scaffold317 TRF Tandem_Repeat 8374 8431 109 + . . scaffold317 WUBlastX DNA_Kolobok-Hyd 9236 9577 43 + . . scaffold317 WUBlastX DNA_IS4EU 9332 9586 50 + . . scaffold317 TRF Tandem_Repeat 11080 11109 51 + . . scaffold317 GLEAN mRNA 12761 14362 0.605891 - . ID=CGI_10019338; scaffold317 GLEAN promoter 14363 15362 0.605891 - . ID=CGI_10019338; scaffold317 TRF Tandem_Repeat 17323 17392 52 + . . scaffold317 GLEAN mRNA 62937 69379 0.654013 - . ID=CGI_10019339; scaffold317 TRF Tandem_Repeat 63883 63958 152 + . . scaffold317 GLEAN promoter 69380 70379 0.654013 - . ID=CGI_10019339; scaffold317 TRF Tandem_Repeat 71362 71486 83 + . . scaffold317 TRF Tandem_Repeat 79755 80812 1000 + . . scaffold317 TRF Tandem_Repeat 84503 84591 151 + . . scaffold317 WUBlastX LINE_Penelope 85396 85509 52 + . . scaffold317 WUBlastX LINE_Penelope 85484 85759 135 + . . scaffold317 WUBlastX LINE_Penelope 85526 85774 153 + . . scaffold317 WUBlastX LTR_ERV-Foamy 89033 89068 20 - . . scaffold317 WUBlastX LTR_Gypsy 89048 89110 21 - . . scaffold317 WUBlastX LTR_Gypsy 89233 89364 35 - . . scaffold317 WUBlastX LTR_Gypsy 89363 89707 239 - . . scaffold317 WUBlastX LTR_Gypsy 89710 90558 209 - . . scaffold317 WUBlastX LTR_Gypsy 89911 91059 345 - . . scaffold317 WUBlastX LTR_Gypsy 89932 90570 356 - . . scaffold317 WUBlastX DNA_Kolobok 96285 96380 26 + . . scaffold317 GLEAN mRNA 97924 106335 0.813712 - . ID=CGI_10019340; scaffold317 TRF Tandem_Repeat 99803 99840 76 + . . scaffold317 GLEAN promoter 106336 107335 0.813712 - . ID=CGI_10019340; scaffold317 GLEAN mRNA 106656 107180 0.69447 - . ID=CGI_10019341; scaffold317 GLEAN promoter 107181 108180 0.69447 - . ID=CGI_10019341; scaffold317 WUBlastX DNA_Kolobok-Hyd 108014 108571 60 - . . scaffold317 GLEAN mRNA 108550 108783 0.998263 - . ID=CGI_10019342; scaffold317 GLEAN promoter 108784 109783 0.998263 - . ID=CGI_10019342; scaffold317 WUBlastX DNA_Kolobok-Hyd 109025 109066 30 - . . scaffold317 GLEAN mRNA 109364 113529 0.986804 - . ID=CGI_10019343; scaffold317 WUBlastX DNA_Harbinger 111630 111686 25 + . . scaffold317 WUBlastX DNA_Harbinger 111682 111912 110 + . . scaffold317 TRF Tandem_Repeat 112022 112058 74 + . . scaffold317 TRF Tandem_Repeat 112252 112313 124 + . . scaffold317 GLEAN promoter 113530 114529 0.986804 - . ID=CGI_10019343; scaffold317 GLEAN promoter 114633 115632 0.989111 + . ID=CGI_10019344; scaffold317 GLEAN mRNA 115633 116375 0.989111 + . ID=CGI_10019344; scaffold317 WUBlastX LTR_Gypsy 115719 115847 24 + . . scaffold317 WUBlastX LTR_Ngaro 116405 117916 430 + . . scaffold317 WUBlastX LTR_Ngaro 116651 117988 770 + . . scaffold317 WUBlastX LTR_Ngaro 117975 118856 243 + . . scaffold317 WUBlastX LTR_Ngaro 118029 118760 269 + . . scaffold317 WUBlastX DNA?_Crypton? 118761 119006 53 + . . scaffold317 GLEAN promoter 122249 123248 0.852803 + . ID=CGI_10019345; scaffold317 GLEAN mRNA 123249 146317 0.852803 + . ID=CGI_10019345; scaffold317 TRF Tandem_Repeat 125173 125901 1086 + . . scaffold317 TRF Tandem_Repeat 125983 126030 60 + . . scaffold317 WUBlastX DNA_hAT-hATw 135238 135354 36 + . . scaffold317 WUBlastX DNA_hAT-hATw 135603 136250 39 + . . scaffold317 WUBlastX DNA_hAT-hATw 136250 136708 121 + . . scaffold317 WUBlastX DNA_hAT-hATw 136804 138024 362 + . . scaffold317 WUBlastX DNA_Sola 143756 143983 121 + . . scaffold317 WUBlastX DNA_Sola 143977 144135 46 + . . scaffold317 GLEAN promoter 145394 146393 0.992482 + . ID=CGI_10019346; scaffold317 GLEAN mRNA 146394 150282 0.992482 + . ID=CGI_10019346; scaffold317 WUBlastX LINE_L2 149055 149144 38 - . . scaffold317 GLEAN promoter 152090 153089 0.520587 + . ID=CGI_10019347; scaffold317 GLEAN mRNA 153090 159310 0.520587 + . ID=CGI_10019347; scaffold317 TRF Tandem_Repeat 157066 157096 62 + . . scaffold317 WUBlastX DNA_Maverick 158673 159209 239 + . . scaffold317 WUBlastX DNA_Maverick 159164 159307 115 + . . scaffold317 WUBlastX DNA_Maverick 159557 160183 45 + . . scaffold317 WUBlastX DNA_Maverick 159737 160177 82 + . . scaffold317 WUBlastX DNA_Maverick 161945 163750 411 - . . scaffold317 WUBlastX DNA_Maverick 163873 164418 293 - . . scaffold317 WUBlastX DNA_Maverick 164391 164540 69 - . . scaffold317 WUBlastX DNA_Maverick 164832 164912 20 - . . scaffold317 WUBlastX DNA_Maverick 165481 166257 123 - . . scaffold317 WUBlastX DNA_Harbinger 170966 171187 71 - . . scaffold317 WUBlastX DNA_Harbinger 171322 171432 54 - . . scaffold317 WUBlastX LINE_L1 171650 172162 174 + . . scaffold317 WUBlastX LINE_L1 171731 172162 291 + . . scaffold317 TRF Tandem_Repeat 172183 172492 467 + . . scaffold317 TRF Tandem_Repeat 200890 201955 1541 + . . scaffold317 GLEAN mRNA 202383 206966 0.755515 - . ID=CGI_10019348; scaffold317 TRF Tandem_Repeat 203977 204017 82 + . . scaffold317 WUBlastX DNA_Kolobok 206631 206939 33 - . . scaffold317 GLEAN promoter 206967 207966 0.755515 - . ID=CGI_10019348; scaffold317 WUBlastX DNA_Maverick 207806 208162 110 - . . scaffold317 WUBlastX DNA_Maverick 208007 208159 116 - . . scaffold317 GLEAN mRNA 210048 210272 0.743282 - . ID=CGI_10019349; scaffold317 GLEAN promoter 210273 211272 0.743282 - . ID=CGI_10019349; scaffold317 GLEAN mRNA 210279 210503 0.999372 - . ID=CGI_10019350; scaffold317 GLEAN promoter 210504 211503 0.999372 - . ID=CGI_10019350; scaffold317 GLEAN promoter 220663 221662 0.999978 + . ID=CGI_10019351; scaffold317 GLEAN mRNA 221663 223117 0.999978 + . ID=CGI_10019351; scaffold317 GLEAN promoter 227689 228688 0.606028 + . ID=CGI_10019352; scaffold317 GLEAN mRNA 228689 251614 0.606028 + . ID=CGI_10019352; scaffold317 TRF Tandem_Repeat 237555 237606 95 + . . scaffold317 TRF Tandem_Repeat 241010 241096 86 + . . scaffold317 TRF Tandem_Repeat 241023 241105 51 + . . scaffold317 TRF Tandem_Repeat 241121 241192 74 + . . scaffold317 TRF Tandem_Repeat 242515 243235 973 + . . scaffold317 WUBlastX DNA_Sola 256256 256336 45 + . . scaffold317 WUBlastX DNA_Sola 256412 256660 52 + . . scaffold317 WUBlastX DNA_Sola 256457 256642 65 + . . scaffold317 WUBlastX DNA_Sola 256968 257078 31 + . . scaffold317 GLEAN promoter 257231 258230 0.734173 + . ID=CGI_10019353; scaffold317 GLEAN mRNA 258231 258801 0.734173 + . ID=CGI_10019353; scaffold317 WUBlastX DNA_IS4EU 261235 262569 705 - . . scaffold317 TRF Tandem_Repeat 285952 286012 59 + . . scaffold317 TRF Tandem_Repeat 285953 285999 58 + . . scaffold317 TRF Tandem_Repeat 286071 286106 54 + . . scaffold317 TRF Tandem_Repeat 287561 288346 431 + . . scaffold317 WUBlastX LINE_CR1 298142 298381 48 - . . scaffold317 WUBlastX LINE_L2 298148 298513 33 - . . scaffold317 WUBlastX LINE_CR1 298695 298838 47 + . . scaffold317 TRF Tandem_Repeat 326626 326686 122 + . . scaffold317 TRF Tandem_Repeat 344037 344100 119 + . . scaffold317 WUBlastX LTR_DIRS 345130 345570 78 + . . scaffold317 TRF Tandem_Repeat 350857 350881 50 + . . scaffold317 TRF Tandem_Repeat 350883 350941 109 + . . scaffold317 WUBlastX LTR_Ngaro 350955 351149 41 - . . scaffold317 WUBlastX LTR_Ngaro 351048 351173 36 - . . scaffold317 WUBlastX LTR_Ngaro 351057 351149 42 - . . scaffold317 WUBlastX LTR_Ngaro 351178 351741 98 - . . scaffold317 WUBlastX LTR_Ngaro 351340 351741 118 - . . scaffold317 GLEAN mRNA 364194 365162 0.997321 - . ID=CGI_10019356; scaffold317 GLEAN promoter 365163 366162 0.997321 - . ID=CGI_10019356; scaffold317 TRF Tandem_Repeat 370869 370914 92 + . . scaffold317 TRF Tandem_Repeat 376443 377720 1393 + . . scaffold317 TRF Tandem_Repeat 389413 389462 73 + . . scaffold317 TRF Tandem_Repeat 389413 389468 58 + . . scaffold317 TRF Tandem_Repeat 389416 389468 88 + . . scaffold317 TRF Tandem_Repeat 391143 391399 442 + . . scaffold317 TRF Tandem_Repeat 394052 394106 65 + . . scaffold317 TRF Tandem_Repeat 394053 394106 81 + . . scaffold317 TRF Tandem_Repeat 394053 394106 81 + . . scaffold317 TRF Tandem_Repeat 395758 395795 67 + . . scaffold317 TRF Tandem_Repeat 401185 401216 64 + . . scaffold317 TRF Tandem_Repeat 407866 407915 57 + . . scaffold317 GLEAN mRNA 411915 412268 1 - . ID=CGI_10019357; scaffold317 GLEAN promoter 412269 413268 1 - . ID=CGI_10019357; scaffold317 WUBlastX DNA_IS4EU 416087 416377 47 + . . scaffold317 WUBlastX DNA_IS4EU 416926 417063 69 - . . scaffold317 WUBlastX DNA_IS4EU 417029 417334 54 - . . scaffold317 TRF Tandem_Repeat 442845 442896 104 + . . scaffold317 GLEAN mRNA 449731 473647 0.868328 - . ID=CGI_10019358; scaffold317 TRF Tandem_Repeat 452322 452401 114 + . . scaffold317 TRF Tandem_Repeat 459702 459741 53 + . . scaffold317 GLEAN promoter 473648 474647 0.868328 - . ID=CGI_10019358; scaffold317 WUBlastX LTR_DIRS 484713 485366 145 + . . scaffold317 WUBlastX LTR_DIRS 484713 485228 162 + . . scaffold317 WUBlastX LTR_DIRS 484956 485609 123 + . . scaffold317 WUBlastX LTR_DIRS 485487 486590 308 + . . scaffold317 WUBlastX LTR_DIRS 486296 487027 266 + . . scaffold317 WUBlastX LTR_DIRS 487027 487224 83 + . . scaffold317 WUBlastX LTR_DIRS 487036 487842 48 + . . scaffold317 WUBlastX LTR_DIRS 487364 487555 62 + . . scaffold317 WUBlastX LTR_DIRS 487564 487845 125 + . . scaffold317 WUBlastX LTR_DIRS 487621 487845 134 + . . scaffold317 WUBlastX LTR_DIRS 487833 487985 38 + . . scaffold317 WUBlastX LTR_DIRS 487869 488018 63 + . . scaffold317 WUBlastX LTR_DIRS 487994 488212 66 + . . scaffold317 TRF Tandem_Repeat 493322 494479 1559 + . . scaffold317 WUBlastX DNA_MuDR 499917 500069 63 - . . scaffold317 WUBlastX DNA_MuDR 499978 500646 98 - . . scaffold317 WUBlastX DNA_MuDR 500035 500601 116 - . . scaffold317 GLEAN mRNA 500226 523403 0.473225 - . ID=CGI_10019359; scaffold317 TRF Tandem_Repeat 509021 509054 68 + . . scaffold317 TRF Tandem_Repeat 516983 517038 105 + . . scaffold317 GLEAN promoter 523404 524403 0.473225 - . ID=CGI_10019359; scaffold317 WUBlastX LTR_Gypsy 524273 524320 27 - . . scaffold317 WUBlastX LTR_Gypsy 524441 524608 29 - . . scaffold317 WUBlastX LTR_Gypsy 524447 524554 45 - . . scaffold317 WUBlastX LTR_Gypsy 524474 524575 42 - . . scaffold317 WUBlastX LTR_Gypsy 524619 525428 583 - . . scaffold317 WUBlastX LTR_Gypsy 525425 525754 203 - . . scaffold317 WUBlastX LTR_Gypsy 525751 525996 75 - . . scaffold317 WUBlastX LTR_Gypsy 525751 525957 108 - . . scaffold317 WUBlastX LTR_Gypsy 526000 526911 193 - . . scaffold317 WUBlastX LTR_Gypsy 526358 526696 194 - . . scaffold317 WUBlastX LTR_Gypsy 526439 526696 207 - . . scaffold317 WUBlastX LTR_Gypsy 526891 527028 21 - . . scaffold317 GLEAN promoter 540893 541892 1 + . ID=CGI_10019360; scaffold317 GLEAN mRNA 541893 545904 1 + . ID=CGI_10019360; scaffold317 TRF Tandem_Repeat 542786 542840 110 + . . scaffold317 GLEAN promoter 547938 548937 0.734544 + . ID=CGI_10019361; scaffold317 GLEAN mRNA 548938 550901 0.734544 + . ID=CGI_10019361; scaffold317 GLEAN mRNA 568959 575632 0.98413 - . ID=CGI_10019362; scaffold317 WUBlastX LTR_Copia 569327 569626 24 - . . scaffold317 TRF Tandem_Repeat 570140 570573 504 + . . scaffold317 GLEAN promoter 575633 576632 0.98413 - . ID=CGI_10019362; scaffold317 GLEAN promoter 576819 577818 0.999298 + . ID=CGI_10019363; scaffold317 GLEAN mRNA 577819 591172 0.999298 + . ID=CGI_10019363; scaffold317 TRF Tandem_Repeat 579487 579525 69 + . . scaffold31736 GLEAN mRNA 5826 8930 1 - . ID=CGI_10000785; scaffold31736 GLEAN promoter 8931 9930 1 - . ID=CGI_10000785; scaffold31752 WUBlastX DNA_Kolobok 399 890 26 + . . scaffold31752 GLEAN promoter 3064 4063 1 + . ID=CGI_10000790; scaffold31752 GLEAN mRNA 4064 7288 1 + . ID=CGI_10000790; scaffold31752 TRF Tandem_Repeat 8304 8331 56 + . . scaffold31752 TRF Tandem_Repeat 8563 8650 90 + . . scaffold31756 TRF Tandem_Repeat 559 705 104 + . . scaffold31756 TRF Tandem_Repeat 1396 1489 125 + . . scaffold31756 TRF Tandem_Repeat 1536 1624 137 + . . scaffold31756 TRF Tandem_Repeat 2181 2920 783 + . . scaffold31756 WUBlastX LINE_Penelope 5939 6478 230 + . . scaffold31756 WUBlastX LINE_Penelope 6462 7466 400 + . . scaffold31756 WUBlastX LINE_Penelope 9425 9610 41 + . . scaffold31756 WUBlastX LINE_Penelope 9473 9724 60 + . . scaffold31784 WUBlastX DNA_IS4EU 518 832 112 - . . scaffold31784 GLEAN promoter 6514 7513 0.560051 + . ID=CGI_10000786; scaffold31784 GLEAN mRNA 7514 9215 0.560051 + . ID=CGI_10000786; scaffold31792 WUBlastX DNA_IS4EU 5345 5464 86 + . . scaffold318 GLEAN promoter 1 538 1 + . ID=CGI_10000128; scaffold318 GLEAN mRNA 539 1882 1 + . ID=CGI_10000128; scaffold31816 TRF Tandem_Repeat 1819 1868 100 + . . scaffold31816 TRF Tandem_Repeat 3343 4121 1039 + . . scaffold31816 TRF Tandem_Repeat 5391 5429 78 + . . scaffold31816 TRF Tandem_Repeat 8925 8990 116 + . . scaffold31816 TRF Tandem_Repeat 9191 9238 96 + . . scaffold31816 TRF Tandem_Repeat 9429 9581 256 + . . scaffold31816 WUBlastX DNA_TcMar-Tc1 9861 10136 40 + . . scaffold31816 WUBlastX DNA_TcMar-Tc1 9903 10091 55 + . . scaffold31816 WUBlastX DNA_TcMar-Tc1 10087 10191 77 + . . scaffold31842 GLEAN mRNA 1227 10097 1 - . ID=CGI_10000796; scaffold31842 GLEAN promoter 10098 10261 1 - . ID=CGI_10000796; scaffold31880 GLEAN mRNA 369 5714 1 - . ID=CGI_10000810; scaffold31880 GLEAN promoter 5715 6714 1 - . ID=CGI_10000810; scaffold31880 WUBlastX LINE_RTE-X 6326 6592 59 - . . scaffold31880 WUBlastX LINE_RTE-X 6368 6649 84 - . . scaffold31880 WUBlastX LINE_RTE-X 6452 6613 84 - . . scaffold31880 WUBlastX LINE_RTE-X 6621 6764 40 - . . scaffold31880 WUBlastX LINE_RTE-X 6775 7191 130 - . . scaffold31880 WUBlastX LINE_RTE-X 7181 7762 349 - . . scaffold31880 WUBlastX LINE_RTE-X 7747 8607 393 - . . scaffold31880 WUBlastX LINE_RTE-X 8613 9170 189 - . . scaffold31880 WUBlastX LINE_RTE-X 9154 9564 170 - . . scaffold31880 WUBlastX LINE_RTE-X 9578 9736 44 - . . scaffold31880 WUBlastX LINE_RTE-X 9909 10097 102 - . . scaffold31900 GLEAN promoter 3890 4889 0.999372 + . ID=CGI_10000804; scaffold31900 GLEAN promoter 4813 5812 0.481128 + . ID=CGI_10000805; scaffold31900 GLEAN mRNA 4890 5159 0.999372 + . ID=CGI_10000804; scaffold31900 GLEAN mRNA 5813 6499 0.481128 + . ID=CGI_10000805; scaffold31920 WUBlastX LTR_Pao 1 306 251 + . . scaffold31920 WUBlastX LTR_Pao 1308 1946 46 + . . scaffold31920 WUBlastX LTR_Pao 1695 6983 3575 + . . scaffold31920 WUBlastX LTR_Pao 6976 7242 212 + . . scaffold31954 WUBlastX LINE_RTE-X 540 635 33 - . . scaffold31954 WUBlastX LINE_RTE-X 593 691 34 - . . scaffold31954 WUBlastX LINE_RTE-X 721 1476 89 - . . scaffold31954 TRF Tandem_Repeat 7643 7670 56 + . . scaffold31954 TRF Tandem_Repeat 7668 7724 105 + . . scaffold31956 GLEAN promoter 2660 3659 0.998023 + . ID=CGI_10000816; scaffold31956 GLEAN mRNA 3660 8304 0.998023 + . ID=CGI_10000816; scaffold31956 GLEAN promoter 7433 8432 1 + . ID=CGI_10000817; scaffold31956 WUBlastX LINE_L1 8298 9140 27 + . . scaffold31956 GLEAN mRNA 8433 9686 1 + . ID=CGI_10000817; scaffold32 WUBlastX DNA_TcMar-Tc1 22 108 43 - . . scaffold32 WUBlastX DNA_TcMar-Tc1 107 259 46 - . . scaffold32 WUBlastX DNA_TcMar-Tc1 155 280 29 - . . scaffold32 WUBlastX DNA_TcMar-Tc1 300 902 67 - . . scaffold32 TRF Tandem_Repeat 10129 10176 60 + . . scaffold32 TRF Tandem_Repeat 10130 10180 75 + . . scaffold32 TRF Tandem_Repeat 10207 11000 1139 + . . scaffold32 WUBlastX DNA_IS4EU 15305 15619 99 + . . scaffold32 WUBlastX DNA_Kolobok-IS4 16352 16534 41 + . . scaffold32 WUBlastX DNA_IS4EU 16352 16495 51 + . . scaffold32 WUBlastX DNA_IS4EU 17101 18072 64 + . . scaffold32 WUBlastX DNA_IS4EU 17347 18117 225 + . . scaffold32 WUBlastX DNA_IS4EU 20739 21101 51 - . . scaffold32 TRF Tandem_Repeat 24968 24992 50 + . . scaffold32 TRF Tandem_Repeat 26008 26048 55 + . . scaffold32 TRF Tandem_Repeat 35088 35162 78 + . . scaffold32 TRF Tandem_Repeat 38383 39296 731 + . . scaffold32 TRF Tandem_Repeat 41448 41478 62 + . . scaffold32 TRF Tandem_Repeat 46408 46505 126 + . . scaffold32 WUBlastX DNA_TcMar-Marin 54445 54843 154 + . . scaffold32 WUBlastX DNA_TcMar-Marin 54445 55005 86 + . . scaffold32 WUBlastX DNA_TcMar-Marin 55161 55262 26 + . . scaffold32 TRF Tandem_Repeat 64224 64250 54 + . . scaffold32 GLEAN promoter 65963 66962 1 + . ID=CGI_10010062; scaffold32 GLEAN mRNA 66963 72951 1 + . ID=CGI_10010062; scaffold32 TRF Tandem_Repeat 69265 69314 66 + . . scaffold32 TRF Tandem_Repeat 69487 70730 1981 + . . scaffold32 GLEAN promoter 76022 77021 0.998086 + . ID=CGI_10010063; scaffold32 GLEAN mRNA 77022 91943 0.998086 + . ID=CGI_10010063; scaffold32 TRF Tandem_Repeat 77437 77471 61 + . . scaffold32 TRF Tandem_Repeat 79295 79334 80 + . . scaffold32 WUBlastX LINE_RTE-X 96594 96851 41 + . . scaffold32 WUBlastX LINE_RTE-X 96633 96881 77 + . . scaffold32 WUBlastX LINE_RTE-X 96639 96974 66 + . . scaffold32 TRF Tandem_Repeat 101852 103083 1320 + . . scaffold32 TRF Tandem_Repeat 103256 103298 56 + . . scaffold32 GLEAN promoter 106471 107470 0.99947 + . ID=CGI_10010064; scaffold32 GLEAN mRNA 107471 113796 0.99947 + . ID=CGI_10010064; scaffold32 GLEAN promoter 113530 114529 0.999675 + . ID=CGI_10010065; scaffold32 GLEAN mRNA 114530 122691 0.999675 + . ID=CGI_10010065; scaffold32 TRF Tandem_Repeat 119750 120070 133 + . . scaffold32 TRF Tandem_Repeat 120369 120504 84 + . . scaffold32 GLEAN mRNA 123425 124752 1 - . ID=CGI_10010066; scaffold32 TRF Tandem_Repeat 124304 124601 291 + . . scaffold32 TRF Tandem_Repeat 124309 124607 251 + . . scaffold32 GLEAN promoter 124753 125752 1 - . ID=CGI_10010066; scaffold32 WUBlastX LINE_RTE-BovB 130576 131025 56 + . . scaffold32 WUBlastX LINE_RTE-X 131061 131171 24 + . . scaffold32 WUBlastX LINE_RTE-BovB 131061 131117 29 + . . scaffold32 WUBlastX LINE_RTE-BovB 132265 132477 25 + . . scaffold32 WUBlastX LINE_RTE 132316 132456 35 + . . scaffold32 WUBlastX LINE_RTE-BovB 132340 132462 54 + . . scaffold32 WUBlastX LINE_RTE-BovB 132373 132795 66 + . . scaffold32 WUBlastX LINE_RTE-BovB 132500 133192 244 + . . scaffold32 WUBlastX LINE_RTE-X 133007 133279 27 + . . scaffold32 WUBlastX LINE_RTE-BovB 133231 133530 25 + . . scaffold32 WUBlastX LINE_RTE-BovB 133312 133497 64 + . . scaffold32 WUBlastX LINE_RTE-BovB 133615 133845 52 + . . scaffold32 TRF Tandem_Repeat 138649 138776 166 + . . scaffold32 WUBlastX DNA_PiggyBac 139014 139400 130 - . . scaffold32 GLEAN promoter 140633 141632 0.992121 + . ID=CGI_10010068; scaffold32 TRF Tandem_Repeat 140931 141045 97 + . . scaffold32 GLEAN mRNA 141633 158953 0.992121 + . ID=CGI_10010068; scaffold32 WUBlastX DNA_TcMar-Marin 142622 142846 58 - . . scaffold32 TRF Tandem_Repeat 152350 152397 96 + . . scaffold32 GLEAN mRNA 161926 164103 1 - . ID=CGI_10010069; scaffold32 TRF Tandem_Repeat 162029 162063 52 + . . scaffold32 GLEAN promoter 164104 165103 1 - . ID=CGI_10010069; scaffold32 GLEAN promoter 165860 166859 1 + . ID=CGI_10010070; scaffold32 GLEAN mRNA 166860 168673 1 + . ID=CGI_10010070; scaffold32 TRF Tandem_Repeat 172654 172693 62 + . . scaffold32 GLEAN mRNA 173932 185751 0.999676 - . ID=CGI_10010071; scaffold32 GLEAN promoter 185752 186751 0.999676 - . ID=CGI_10010071; scaffold32 TRF Tandem_Repeat 186943 186982 80 + . . scaffold32 GLEAN mRNA 188638 195948 1 - . ID=CGI_10010072; scaffold32 TRF Tandem_Repeat 189140 189197 109 + . . scaffold32 TRF Tandem_Repeat 192105 192146 84 + . . scaffold32 TRF Tandem_Repeat 194174 194233 111 + . . scaffold32 GLEAN promoter 195949 196948 1 - . ID=CGI_10010072; scaffold32 TRF Tandem_Repeat 197210 197249 62 + . . scaffold32 WUBlastX DNA_P 200735 200902 23 + . . scaffold32 WUBlastX DNA_IS4EU 201603 202190 207 + . . scaffold32 WUBlastX DNA_IS4EU 201720 202214 208 + . . scaffold32 WUBlastX DNA_IS4EU 202184 202345 94 + . . scaffold32 WUBlastX DNA_IS4EU 202184 202417 62 + . . scaffold32 WUBlastX RC_Helitron 205477 206103 90 - . . scaffold32 WUBlastX LINE_L2 205504 206217 36 - . . scaffold32 WUBlastX LINE_Penelope 208110 208589 254 - . . scaffold32 WUBlastX LINE_CR1-L2 212401 212601 48 + . . scaffold32 WUBlastX LINE_RTE-BovB 218874 219137 39 - . . scaffold32 WUBlastX LINE_RTE-BovB 218922 219092 98 - . . scaffold32 WUBlastX LINE_RTE-BovB 218952 219137 71 - . . scaffold32 WUBlastX LINE_RTE-BovB 219107 219304 21 - . . scaffold32 WUBlastX LINE_RTE-BovB 219206 219328 48 - . . scaffold32 WUBlastX LINE_RTE-BovB 219218 219304 56 - . . scaffold32 TRF Tandem_Repeat 220184 220233 73 + . . scaffold32 TRF Tandem_Repeat 224457 224503 87 + . . scaffold320 GLEAN mRNA 4574 13110 0.999988 - . ID=CGI_10001089; scaffold320 GLEAN promoter 13111 14110 0.999988 - . ID=CGI_10001089; scaffold32014 GLEAN promoter 6353 7352 1 + . ID=CGI_10000826; scaffold32014 GLEAN mRNA 7353 7853 1 + . ID=CGI_10000826; scaffold32024 TRF Tandem_Repeat 1 153 162 + . . scaffold32024 WUBlastX LINE_L1 8370 9140 130 - . . scaffold32030 GLEAN mRNA 2087 9440 1 - . ID=CGI_10000828; scaffold32030 GLEAN promoter 9441 10440 1 - . ID=CGI_10000828; scaffold32064 WUBlastX DNA_IS4EU 4837 5331 47 - . . scaffold32064 WUBlastX DNA_IS4EU 4964 5080 58 - . . scaffold32064 WUBlastX DNA_IS4EU 5653 6366 175 + . . scaffold32064 WUBlastX DNA_Kolobok-IS4 5908 6366 230 + . . scaffold32064 WUBlastX DNA_IS4EU 6387 6686 163 + . . scaffold32064 WUBlastX DNA_IS4EU 7074 7253 43 - . . scaffold32064 WUBlastX DNA_IS4EU 7586 7771 61 - . . scaffold32064 GLEAN mRNA 8151 8423 0.988982 - . ID=CGI_10000847; scaffold32064 GLEAN promoter 8424 9423 0.988982 - . ID=CGI_10000847; scaffold32086 WUBlastX LTR_Ngaro 642 1550 143 + . . scaffold32086 WUBlastX LTR_Ngaro 1146 1526 155 + . . scaffold32086 TRF Tandem_Repeat 8628 8729 134 + . . scaffold32086 TRF Tandem_Repeat 10395 10485 128 + . . scaffold32094 WUBlastX LTR_Ngaro 5448 5984 59 + . . scaffold32094 WUBlastX LTR_Ngaro 6365 6880 94 + . . scaffold32094 TRF Tandem_Repeat 8044 8171 175 + . . scaffold32094 TRF Tandem_Repeat 8044 8171 199 + . . scaffold32094 WUBlastX LTR_Ngaro 9713 9949 34 + . . scaffold32094 WUBlastX LTR_Ngaro 9737 9934 40 + . . scaffold32094 WUBlastX LTR_Ngaro 9967 10131 66 + . . scaffold32096 WUBlastX DNA_Harbinger 48 287 153 - . . scaffold32096 WUBlastX DNA_Harbinger 283 696 217 - . . scaffold32096 WUBlastX LINE_L1-Tx1 1870 2211 35 - . . scaffold32096 WUBlastX LINE_CR1 1897 2139 73 - . . scaffold32096 TRF Tandem_Repeat 4437 4764 500 + . . scaffold32096 TRF Tandem_Repeat 4745 4869 121 + . . scaffold32096 WUBlastX LINE_RTE-BovB 9085 9150 22 + . . scaffold32096 WUBlastX LINE_RTE-BovB 9463 9663 87 + . . scaffold321 GLEAN promoter 499 1498 0.789757 + . ID=CGI_10020795; scaffold321 GLEAN mRNA 1499 14432 0.789757 + . ID=CGI_10020795; scaffold321 TRF Tandem_Repeat 8512 8548 56 + . . scaffold321 GLEAN promoter 13799 14798 0.993072 + . ID=CGI_10020796; scaffold321 GLEAN mRNA 14799 21705 0.993072 + . ID=CGI_10020796; scaffold321 GLEAN mRNA 21628 35700 0.871874 - . ID=CGI_10020797; scaffold321 TRF Tandem_Repeat 32501 32544 61 + . . scaffold321 GLEAN promoter 35701 36700 0.871874 - . ID=CGI_10020797; scaffold321 TRF Tandem_Repeat 38440 38506 80 + . . scaffold321 TRF Tandem_Repeat 41233 41296 128 + . . scaffold321 WUBlastX LTR_Gypsy 43738 44523 370 + . . scaffold321 WUBlastX LTR_Gypsy 43738 44313 406 + . . scaffold321 WUBlastX LTR_Gypsy 44527 45588 231 + . . scaffold321 WUBlastX LTR_Gypsy 44689 45594 944 + . . scaffold321 WUBlastX LTR_Copia 45914 46048 30 + . . scaffold321 WUBlastX LTR_Gypsy 47461 47931 36 + . . scaffold321 WUBlastX LTR_Gypsy 48291 48635 29 + . . scaffold321 WUBlastX LTR_Gypsy 48354 48548 66 + . . scaffold321 WUBlastX LTR_Gypsy 48354 48980 52 + . . scaffold321 WUBlastX LTR_Gypsy-Cigr 49027 50424 715 + . . scaffold321 WUBlastX LTR_Gypsy 50484 50750 21 + . . scaffold321 WUBlastX LTR_Gypsy 50529 50753 48 + . . scaffold321 WUBlastX LTR_Gypsy 50675 51361 115 + . . scaffold321 WUBlastX LTR_Gypsy-Cigr 50786 51838 631 + . . scaffold321 TRF Tandem_Repeat 54526 54756 153 + . . scaffold321 TRF Tandem_Repeat 54528 54889 296 + . . scaffold321 TRF Tandem_Repeat 54558 54812 217 + . . scaffold321 TRF Tandem_Repeat 55466 55504 51 + . . scaffold321 WUBlastX DNA_Crypton 58090 58380 51 + . . scaffold321 WUBlastX DNA_Crypton 59046 59372 72 + . . scaffold321 TRF Tandem_Repeat 74294 74561 317 + . . scaffold321 WUBlastX LINE_L1-Tx1 84062 84538 62 - . . scaffold321 WUBlastX LINE_L1-Tx1 84179 84544 131 - . . scaffold321 WUBlastX LINE_L1-Tx1 84359 84655 26 - . . scaffold321 WUBlastX LINE_L1-Tx1 84685 85458 160 - . . scaffold321 WUBlastX LINE_L1-Tx1 85448 86161 502 - . . scaffold321 WUBlastX LINE_L1 86134 86421 46 - . . scaffold321 WUBlastX LINE_L1-Tx1 86164 86322 71 - . . scaffold321 TRF Tandem_Repeat 86498 86557 102 + . . scaffold321 WUBlastX LTR_Gypsy-Troyk 90636 91010 74 - . . scaffold321 WUBlastX LTR_Gypsy-Troyk 90785 91063 57 - . . scaffold321 GLEAN mRNA 101549 108777 0.997817 - . ID=CGI_10020798; scaffold321 GLEAN promoter 108778 109777 0.997817 - . ID=CGI_10020798; scaffold321 TRF Tandem_Repeat 116493 116543 102 + . . scaffold321 TRF Tandem_Repeat 119029 119097 138 + . . scaffold321 GLEAN mRNA 122886 138139 0.702385 - . ID=CGI_10020799; scaffold321 TRF Tandem_Repeat 123897 123952 87 + . . scaffold321 TRF Tandem_Repeat 134946 135119 136 + . . scaffold321 TRF Tandem_Repeat 135342 135471 97 + . . scaffold321 TRF Tandem_Repeat 136387 136445 109 + . . scaffold321 GLEAN promoter 138140 139139 0.702385 - . ID=CGI_10020799; scaffold321 WUBlastX DNA_TcMar-Tc1 139730 140221 91 + . . scaffold321 WUBlastX DNA_TcMar-Tc1 140158 140700 238 + . . scaffold321 WUBlastX LINE_CR1 144024 144092 22 + . . scaffold321 WUBlastX LINE_RTE-X 144482 144970 105 + . . scaffold321 WUBlastX LINE_RTE-X 144608 145216 166 + . . scaffold321 WUBlastX LINE_RTE-X 144608 144988 209 + . . scaffold321 TRF Tandem_Repeat 149016 149041 52 + . . scaffold321 WUBlastX LINE_L1-Tx1 155407 155727 45 + . . scaffold321 WUBlastX LINE_L1-Tx1 155744 156190 97 + . . scaffold321 WUBlastX LINE_L1 155759 156295 53 + . . scaffold321 TRF Tandem_Repeat 156542 156568 54 + . . scaffold321 TRF Tandem_Repeat 156677 156712 72 + . . scaffold321 TRF Tandem_Repeat 160841 161069 183 + . . scaffold321 TRF Tandem_Repeat 160871 161070 100 + . . scaffold321 TRF Tandem_Repeat 160872 161069 191 + . . scaffold321 TRF Tandem_Repeat 160915 161070 86 + . . scaffold321 TRF Tandem_Repeat 163432 163483 95 + . . scaffold321 TRF Tandem_Repeat 165604 165673 51 + . . scaffold321 TRF Tandem_Repeat 165688 165856 51 + . . scaffold321 TRF Tandem_Repeat 165751 165856 76 + . . scaffold321 WUBlastX LINE_L1-Tx1 166645 167325 143 - . . scaffold321 WUBlastX LINE_L1 168438 168773 57 - . . scaffold321 WUBlastX LINE_L1-Tx1 168516 168773 215 - . . scaffold321 WUBlastX LINE_L1-Tx1 168778 170055 577 - . . scaffold321 TRF Tandem_Repeat 170755 170858 68 + . . scaffold321 GLEAN mRNA 170991 171881 0.996199 - . ID=CGI_10020800; scaffold321 WUBlastX LINE_L1 171429 172001 77 - . . scaffold321 WUBlastX LINE_L1 171525 172142 42 - . . scaffold321 GLEAN promoter 171882 172881 0.996199 - . ID=CGI_10020800; scaffold321 TRF Tandem_Repeat 174753 175812 1314 + . . scaffold321 WUBlastX LINE_Penelope 177467 177664 23 - . . scaffold321 GLEAN mRNA 180964 181674 0.659379 - . ID=CGI_10020801; scaffold321 GLEAN promoter 181675 182674 0.659379 - . ID=CGI_10020801; scaffold321 TRF Tandem_Repeat 200841 200883 59 + . . scaffold321 TRF Tandem_Repeat 202029 202063 52 + . . scaffold321 WUBlastX LINE_RTE-X 202538 202621 45 - . . scaffold321 WUBlastX LINE_RTE-X 202599 202676 20 - . . scaffold321 WUBlastX LINE_RTE-X 202943 203272 135 - . . scaffold321 WUBlastX LINE_RTE-X 203274 203534 84 - . . scaffold321 TRF Tandem_Repeat 205692 205743 104 + . . scaffold321 TRF Tandem_Repeat 208632 208666 70 + . . scaffold321 TRF Tandem_Repeat 218933 218966 68 + . . scaffold321 TRF Tandem_Repeat 219645 219678 68 + . . scaffold321 WUBlastX DNA_Maverick 223449 223781 222 - . . scaffold321 WUBlastX DNA_Maverick 223799 223996 72 - . . scaffold321 WUBlastX DNA_Maverick 223823 224053 58 - . . scaffold321 WUBlastX DNA_Maverick 224232 224291 24 - . . scaffold321 WUBlastX DNA_Maverick 224267 224992 296 - . . scaffold321 WUBlastX LTR_Gypsy 226553 226657 20 - . . scaffold321 WUBlastX LTR_Gypsy-Cigr 226578 227183 322 - . . scaffold321 WUBlastX LTR_Gypsy-Cigr 227111 227581 293 - . . scaffold321 WUBlastX LTR_Gypsy-Cigr 227560 229410 712 - . . scaffold321 WUBlastX LTR_Gypsy 229431 230081 75 - . . scaffold321 WUBlastX LTR_Gypsy 229722 230420 62 - . . scaffold321 WUBlastX LTR_Gypsy 229746 230186 74 - . . scaffold321 WUBlastX LTR_Gypsy 230220 230510 36 - . . scaffold321 WUBlastX LTR_Gypsy 230238 230669 27 - . . scaffold321 WUBlastX DNA_Maverick 232625 232801 150 - . . scaffold321 WUBlastX DNA_Maverick 232885 233166 119 - . . scaffold321 WUBlastX DNA_Maverick 232885 233097 129 - . . scaffold321 WUBlastX DNA_Maverick 233097 233252 40 - . . scaffold321 WUBlastX DNA_Maverick 233255 233956 139 - . . scaffold321 WUBlastX DNA_Maverick 233573 234037 211 - . . scaffold321 WUBlastX DNA_Maverick 234025 234228 100 - . . scaffold321 WUBlastX DNA_Maverick 234127 234300 38 - . . scaffold321 WUBlastX DNA_Maverick 234315 234668 54 - . . scaffold321 WUBlastX DNA_Maverick 234402 234779 24 - . . scaffold321 WUBlastX DNA_Maverick 234875 235018 24 - . . scaffold321 WUBlastX DNA_Maverick 234905 235090 49 - . . scaffold321 WUBlastX DNA_Maverick 234959 235135 37 - . . scaffold321 TRF Tandem_Repeat 240710 240738 58 + . . scaffold321 TRF Tandem_Repeat 240921 240945 50 + . . scaffold321 TRF Tandem_Repeat 241525 241847 423 + . . scaffold321 GLEAN mRNA 246750 253593 1 - . ID=CGI_10020803; scaffold321 GLEAN promoter 252938 253937 0.544851 + . ID=CGI_10020804; scaffold321 GLEAN promoter 253594 254593 1 - . ID=CGI_10020803; scaffold321 GLEAN mRNA 253938 267621 0.544851 + . ID=CGI_10020804; scaffold321 TRF Tandem_Repeat 264969 266061 1600 + . . scaffold321 TRF Tandem_Repeat 266266 266303 67 + . . scaffold321 TRF Tandem_Repeat 266630 266693 101 + . . scaffold321 TRF Tandem_Repeat 266633 266693 95 + . . scaffold321 GLEAN promoter 280174 281173 0.998685 + . ID=CGI_10020805; scaffold321 GLEAN mRNA 281174 299090 0.998685 + . ID=CGI_10020805; scaffold321 TRF Tandem_Repeat 281690 281719 60 + . . scaffold321 TRF Tandem_Repeat 287746 287896 189 + . . scaffold321 TRF Tandem_Repeat 287761 288564 932 + . . scaffold321 TRF Tandem_Repeat 287902 288564 862 + . . scaffold321 TRF Tandem_Repeat 289346 290151 659 + . . scaffold321 GLEAN mRNA 296753 336591 0.997855 - . ID=CGI_10020806; scaffold321 TRF Tandem_Repeat 305405 305501 79 + . . scaffold321 TRF Tandem_Repeat 313397 313493 79 + . . scaffold321 TRF Tandem_Repeat 314825 315030 112 + . . scaffold321 TRF Tandem_Repeat 322269 322300 64 + . . scaffold321 TRF Tandem_Repeat 326235 326276 84 + . . scaffold321 GLEAN promoter 336592 337591 0.997855 - . ID=CGI_10020806; scaffold321 TRF Tandem_Repeat 337138 337176 78 + . . scaffold321 TRF Tandem_Repeat 342624 342773 77 + . . scaffold321 TRF Tandem_Repeat 345252 345427 88 + . . scaffold321 TRF Tandem_Repeat 345252 345427 117 + . . scaffold321 TRF Tandem_Repeat 352868 352909 84 + . . scaffold321 TRF Tandem_Repeat 353244 353330 165 + . . scaffold321 GLEAN promoter 356134 357133 0.996557 + . ID=CGI_10020807; scaffold321 GLEAN mRNA 357134 357676 0.996557 + . ID=CGI_10020807; scaffold321 WUBlastX LINE_RTE-X 359078 359209 25 + . . scaffold321 WUBlastX LINE_RTE-X 359105 359227 54 + . . scaffold321 WUBlastX LINE_RTE-X 359192 359614 146 + . . scaffold321 WUBlastX LINE_RTE-X 359629 360093 101 + . . scaffold321 TRF Tandem_Repeat 360405 361305 645 + . . scaffold321 TRF Tandem_Repeat 360405 361297 972 + . . scaffold321 TRF Tandem_Repeat 360405 361241 1015 + . . scaffold321 WUBlastX LINE_RTE-X 362931 363050 29 + . . scaffold321 WUBlastX LINE_RTE-X 363090 363308 113 + . . scaffold321 GLEAN promoter 364476 365475 0.556314 + . ID=CGI_10020808; scaffold321 GLEAN mRNA 365476 371311 0.556314 + . ID=CGI_10020808; scaffold321 GLEAN mRNA 375881 377069 1 - . ID=CGI_10020809; scaffold321 WUBlastX LINE_L2 376692 376991 36 - . . scaffold321 GLEAN promoter 377070 378069 1 - . ID=CGI_10020809; scaffold321 GLEAN mRNA 380260 382012 1 - . ID=CGI_10020810; scaffold321 GLEAN promoter 382013 383012 1 - . ID=CGI_10020810; scaffold321 GLEAN mRNA 383442 385443 0.548647 - . ID=CGI_10020811; scaffold321 GLEAN promoter 385444 386443 0.548647 - . ID=CGI_10020811; scaffold321 TRF Tandem_Repeat 388570 388596 54 + . . scaffold321 TRF Tandem_Repeat 391964 391994 53 + . . scaffold321 WUBlastX LINE_CR1 393889 393921 22 + . . scaffold321 WUBlastX LINE_CR1 394175 394282 36 + . . scaffold321 WUBlastX LINE_CR1 394293 394451 54 + . . scaffold321 WUBlastX LINE_CR1 394499 394681 70 + . . scaffold321 TRF Tandem_Repeat 409891 409936 83 + . . scaffold321 TRF Tandem_Repeat 412635 412695 113 + . . scaffold321 TRF Tandem_Repeat 437021 437093 128 + . . scaffold321 TRF Tandem_Repeat 443418 443442 50 + . . scaffold321 TRF Tandem_Repeat 446651 446757 205 + . . scaffold321 TRF Tandem_Repeat 455525 455571 94 + . . scaffold321 WUBlastX DNA_TcMar-Marin 459090 459335 65 + . . scaffold321 WUBlastX DNA_TcMar-Marin 459114 459893 42 + . . scaffold321 TRF Tandem_Repeat 467119 467176 107 + . . scaffold321 TRF Tandem_Repeat 467119 467176 89 + . . scaffold321 TRF Tandem_Repeat 473074 473120 94 + . . scaffold321 GLEAN mRNA 474717 485753 0.439448 - . ID=CGI_10020812; scaffold321 WUBlastX LINE_RTE-X 476954 477064 25 - . . scaffold321 WUBlastX LINE_RTE-X 476993 477397 42 - . . scaffold321 WUBlastX LINE_RTE-X 477360 477623 44 - . . scaffold321 WUBlastX LINE_RTE-X 477411 477629 98 - . . scaffold321 WUBlastX LINE_RTE-X 477637 477765 79 - . . scaffold321 WUBlastX LINE_RTE-X 477640 477825 64 - . . scaffold321 WUBlastX LTR_Gypsy 477812 478081 190 + . . scaffold321 WUBlastX LTR_Gypsy 478080 478763 172 + . . scaffold321 WUBlastX LTR_Gypsy 478257 478757 191 + . . scaffold321 WUBlastX LTR_Gypsy 478260 479111 175 + . . scaffold321 WUBlastX LTR_Gypsy 479049 479135 36 + . . scaffold321 WUBlastX LTR_Gypsy 479129 479572 463 + . . scaffold321 WUBlastX LTR_Gypsy 479566 480216 176 + . . scaffold321 TRF Tandem_Repeat 480450 480503 65 + . . scaffold321 TRF Tandem_Repeat 480450 480506 80 + . . scaffold321 GLEAN promoter 485754 486753 0.439448 - . ID=CGI_10020812; scaffold321 TRF Tandem_Repeat 487231 487285 110 + . . scaffold321 WUBlastX DNA_Kolobok-Hyd 491759 491905 32 + . . scaffold321 WUBlastX DNA_Kolobok-Hyd 492405 492695 47 + . . scaffold321 TRF Tandem_Repeat 497393 497445 90 + . . scaffold321 GLEAN mRNA 507592 510406 0.532081 - . ID=CGI_10020813; scaffold321 GLEAN promoter 510407 511406 0.532081 - . ID=CGI_10020813; scaffold321 WUBlastX LINE_RTE-X 511509 511697 73 - . . scaffold321 WUBlastX LINE_RTE-X 511675 512295 154 - . . scaffold321 WUBlastX LINE_RTE-X 511912 512292 161 - . . scaffold321 WUBlastX LINE_RTE-X 512328 512576 128 - . . scaffold321 WUBlastX LINE_RTE-X 512608 512775 60 + . . scaffold321 WUBlastX LINE_RTE-X 512750 513130 78 + . . scaffold321 WUBlastX LINE_RTE-X 512840 513133 178 + . . scaffold321 WUBlastX LINE_RTE-BovB 513428 513718 48 - . . scaffold321 WUBlastX LINE_CR1 513509 513808 54 - . . scaffold321 WUBlastX LINE_RTE-X 513509 513739 117 - . . scaffold321 WUBlastX DNA_Crypton 518190 518420 22 + . . scaffold321 WUBlastX DNA_Crypton 518359 518967 277 + . . scaffold321 WUBlastX LINE_RTE-BovB 518911 519882 817 + . . scaffold321 WUBlastX LINE_RTE-BovB 519857 520801 672 + . . scaffold321 WUBlastX DNA_Crypton 520785 520985 81 + . . scaffold321 WUBlastX DNA_Crypton 520982 521131 90 + . . scaffold321 TRF Tandem_Repeat 521818 521855 58 + . . scaffold321 TRF Tandem_Repeat 554200 554245 58 + . . scaffold321 TRF Tandem_Repeat 558008 558166 227 + . . scaffold321 TRF Tandem_Repeat 601801 601834 52 + . . scaffold321 TRF Tandem_Repeat 602004 602854 1110 + . . scaffold321 WUBlastX LINE_RTE-X 604576 605013 71 + . . scaffold321 WUBlastX LINE_RTE-BovB 604980 605240 35 + . . scaffold321 WUBlastX LINE_RTE-X 605034 605309 33 + . . scaffold321 WUBlastX LINE_RTE-X 605299 605409 36 + . . scaffold321 TRF Tandem_Repeat 606646 606678 66 + . . scaffold321 GLEAN mRNA 607958 610643 0.999424 - . ID=CGI_10020814; scaffold321 GLEAN promoter 610644 611643 0.999424 - . ID=CGI_10020814; scaffold321 TRF Tandem_Repeat 618791 618824 68 + . . scaffold321 TRF Tandem_Repeat 618954 618992 69 + . . scaffold321 GLEAN mRNA 620767 622670 0.890005 - . ID=CGI_10020815; scaffold321 GLEAN promoter 622671 623670 0.890005 - . ID=CGI_10020815; scaffold321 TRF Tandem_Repeat 625601 625862 274 + . . scaffold321 WUBlastX LINE_Proto2 628759 630786 256 + . . scaffold321 WUBlastX LINE_RTE-X 629368 630795 261 + . . scaffold321 WUBlastX LINE_RTE-X 629872 630780 296 + . . scaffold321 WUBlastX LINE_L2 630235 630903 168 + . . scaffold321 WUBlastX LINE_L2 630328 631044 100 + . . scaffold321 WUBlastX LINE_L1 631021 631101 21 + . . scaffold321 TRF Tandem_Repeat 632162 632197 72 + . . scaffold321 WUBlastX LTR_Gypsy 633596 637798 2983 - . . scaffold321 WUBlastX LTR_Gypsy 637640 637831 31 - . . scaffold321 WUBlastX LTR_Gypsy 637821 637979 21 - . . scaffold321 WUBlastX LTR_Gypsy 637864 638829 395 - . . scaffold321 TRF Tandem_Repeat 642830 642899 140 + . . scaffold321 TRF Tandem_Repeat 643080 643128 98 + . . scaffold321 TRF Tandem_Repeat 645849 645887 51 + . . scaffold321 WUBlastX LINE_Penelope 649973 650929 31 - . . scaffold321 WUBlastX LINE_Penelope 650541 651119 83 - . . scaffold321 TRF Tandem_Repeat 658183 658247 67 + . . scaffold321 TRF Tandem_Repeat 661424 661497 85 + . . scaffold32102 GLEAN mRNA 1080 2756 0.999999 - . ID=CGI_10000839; scaffold32102 GLEAN promoter 2757 3756 0.999999 - . ID=CGI_10000839; scaffold32118 GLEAN promoter 540 1539 0.999288 + . ID=CGI_10000843; scaffold32118 GLEAN mRNA 1540 8487 0.999288 + . ID=CGI_10000843; scaffold32118 WUBlastX DNA_TcMar-Marin 8839 9033 41 - . . scaffold32118 WUBlastX DNA_TcMar-Marin 8944 9030 42 - . . scaffold32120 GLEAN mRNA 396 10645 1 - . ID=CGI_10000837; scaffold32120 GLEAN promoter 10646 10801 1 - . ID=CGI_10000837; scaffold32140 GLEAN promoter 402 1401 0.840262 + . ID=CGI_10000846; scaffold32140 GLEAN mRNA 1402 1839 0.840262 + . ID=CGI_10000846; scaffold32140 WUBlastX LTR_Gypsy-Cigr 1495 1803 80 + . . scaffold32140 TRF Tandem_Repeat 2527 3189 902 + . . scaffold32160 WUBlastX LTR_Pao 7 114 36 + . . scaffold32160 WUBlastX LTR_Pao 210 497 72 + . . scaffold32160 WUBlastX LTR_Pao 420 584 37 + . . scaffold32160 WUBlastX LTR_Pao 450 821 20 + . . scaffold32160 WUBlastX LTR_Pao 586 723 47 + . . scaffold32160 TRF Tandem_Repeat 7538 7563 52 + . . scaffold32178 GLEAN promoter 1253 2252 0.999999 + . ID=CGI_10000848; scaffold32178 GLEAN mRNA 2253 10828 0.999999 + . ID=CGI_10000848; scaffold32180 GLEAN mRNA 3438 8392 0.999993 - . ID=CGI_10000855; scaffold32180 GLEAN promoter 8393 9392 0.999993 - . ID=CGI_10000855; scaffold32192 GLEAN mRNA 7169 9005 0.65032 - . ID=CGI_10000858; scaffold32192 GLEAN promoter 9006 10005 0.65032 - . ID=CGI_10000858; scaffold322 GLEAN mRNA 405 18094 0.999982 - . ID=CGI_10009747; scaffold322 TRF Tandem_Repeat 3407 4391 651 + . . scaffold322 TRF Tandem_Repeat 3460 4391 1127 + . . scaffold322 TRF Tandem_Repeat 3460 4391 1093 + . . scaffold322 TRF Tandem_Repeat 6954 6994 82 + . . scaffold322 GLEAN promoter 18095 19094 0.999982 - . ID=CGI_10009747; scaffold322 GLEAN promoter 21538 22537 0.994987 + . ID=CGI_10009748; scaffold322 GLEAN mRNA 22538 34743 0.994987 + . ID=CGI_10009748; scaffold322 TRF Tandem_Repeat 23550 23594 90 + . . scaffold322 TRF Tandem_Repeat 30973 31046 75 + . . scaffold322 TRF Tandem_Repeat 30974 31046 51 + . . scaffold322 TRF Tandem_Repeat 38327 38375 98 + . . scaffold322 WUBlastX LINE_RTE-X 39880 40344 216 + . . scaffold322 WUBlastX LINE_RTE-X 40135 40446 49 + . . scaffold322 WUBlastX LINE_L2 41198 41635 47 + . . scaffold322 WUBlastX LINE_RTE-X 41324 42403 306 + . . scaffold322 TRF Tandem_Repeat 42432 42491 57 + . . scaffold322 GLEAN promoter 49030 50029 0.999907 + . ID=CGI_10009749; scaffold322 GLEAN mRNA 50030 50653 0.999907 + . ID=CGI_10009749; scaffold322 TRF Tandem_Repeat 53909 54109 176 + . . scaffold322 TRF Tandem_Repeat 53909 54109 194 + . . scaffold322 TRF Tandem_Repeat 94741 94772 55 + . . scaffold322 TRF Tandem_Repeat 102211 102308 118 + . . scaffold322 TRF Tandem_Repeat 108776 108842 80 + . . scaffold322 TRF Tandem_Repeat 111713 111779 80 + . . scaffold322 TRF Tandem_Repeat 112432 112468 58 + . . scaffold322 TRF Tandem_Repeat 117316 117382 82 + . . scaffold322 TRF Tandem_Repeat 119771 119821 102 + . . scaffold322 TRF Tandem_Repeat 120010 120034 50 + . . scaffold322 TRF Tandem_Repeat 120549 120608 75 + . . scaffold322 WUBlastX LTR_DIRS 124384 125412 91 + . . scaffold322 WUBlastX LTR_DIRS 124645 125439 142 + . . scaffold322 WUBlastX LTR_DIRS 124789 125448 159 + . . scaffold322 WUBlastX LTR_DIRS 125014 125442 175 + . . scaffold322 WUBlastX LTR_DIRS 125158 126660 446 + . . scaffold322 TRF Tandem_Repeat 127781 127835 65 + . . scaffold322 TRF Tandem_Repeat 127784 127839 71 + . . scaffold322 WUBlastX LTR_DIRS 127988 128866 663 + . . scaffold322 WUBlastX LTR_DIRS 128752 129372 367 + . . scaffold322 WUBlastX LTR_DIRS 129339 129716 221 + . . scaffold322 GLEAN mRNA 158894 159775 0.975903 - . ID=CGI_10009750; scaffold322 GLEAN promoter 159776 160775 0.975903 - . ID=CGI_10009750; scaffold322 WUBlastX LTR_Gypsy 169312 169491 46 + . . scaffold322 TRF Tandem_Repeat 186261 186290 51 + . . scaffold322 GLEAN mRNA 191840 197123 0.738574 - . ID=CGI_10009751; scaffold322 TRF Tandem_Repeat 195611 195674 110 + . . scaffold322 GLEAN promoter 197124 198123 0.738574 - . ID=CGI_10009751; scaffold322 WUBlastX DNA_Kolobok-IS4 198251 198454 59 + . . scaffold322 WUBlastX DNA_P 201507 201704 22 + . . scaffold322 WUBlastX DNA_P 201543 201704 24 + . . scaffold322 WUBlastX DNA_P 201646 201954 108 + . . scaffold322 WUBlastX DNA_P 201778 201957 129 + . . scaffold322 WUBlastX DNA_P 202091 202615 22 + . . scaffold322 WUBlastX DNA_P 202091 202393 63 + . . scaffold322 WUBlastX DNA_P 202091 202225 65 + . . scaffold322 WUBlastX DNA_P 206906 207286 42 - . . scaffold322 WUBlastX DNA_P 207080 207460 45 - . . scaffold322 GLEAN mRNA 209605 211657 1 - . ID=CGI_10009752; scaffold322 GLEAN promoter 211658 212657 1 - . ID=CGI_10009752; scaffold322 TRF Tandem_Repeat 213196 213231 54 + . . scaffold322 TRF Tandem_Repeat 213197 213264 55 + . . scaffold322 TRF Tandem_Repeat 213209 213259 50 + . . scaffold322 TRF Tandem_Repeat 213946 213987 84 + . . scaffold322 WUBlastX LINE_L2 215363 216193 401 - . . scaffold322 WUBlastX LINE_L2 216195 217013 574 - . . scaffold322 WUBlastX LINE_CR1-L2 217016 217234 24 - . . scaffold322 WUBlastX LTR_Ngaro 220853 221311 131 + . . scaffold322 WUBlastX LTR_Ngaro 221289 222896 1230 + . . scaffold322 GLEAN mRNA 228445 231916 1 - . ID=CGI_10009753; scaffold322 GLEAN promoter 231917 232916 1 - . ID=CGI_10009753; scaffold322 WUBlastX LINE_RTE-BovB 233056 233322 163 + . . scaffold322 GLEAN promoter 237191 238190 0.999998 + . ID=CGI_10009754; scaffold322 GLEAN mRNA 238191 238796 0.999998 + . ID=CGI_10009754; scaffold32202 WUBlastX LTR_ERV1 183 422 42 + . . scaffold32202 WUBlastX LTR_DIRS 350 1150 273 + . . scaffold32202 WUBlastX LTR_Gypsy 926 1234 47 + . . scaffold32202 WUBlastX LTR_DIRS 1199 1477 150 + . . scaffold32202 WUBlastX LTR_DIRS 1229 1561 32 + . . scaffold32202 WUBlastX LTR_DIRS 1696 2751 541 + . . scaffold32202 WUBlastX LTR_Ngaro 3149 4072 106 + . . scaffold32202 WUBlastX LTR_DIRS? 3296 4108 540 + . . scaffold32202 WUBlastX LINE_RTE-X 6151 6972 249 - . . scaffold32202 WUBlastX LINE_RTE-BovB 6754 7011 84 - . . scaffold32202 WUBlastX LINE_L2 7836 8819 551 - . . scaffold32202 WUBlastX LINE_LOA 8535 8870 73 - . . scaffold32202 WUBlastX LINE_L2 10540 11040 103 + . . scaffold32202 WUBlastX LINE_L2 10642 11040 245 + . . scaffold32230 WUBlastX DNA_TcMar-Pogo 5 508 102 - . . scaffold32230 WUBlastX DNA_TcMar-Pogo 5 418 147 - . . scaffold32230 WUBlastX DNA_MuDR 1767 2123 121 - . . scaffold32230 WUBlastX DNA_MuDR 1848 2153 133 - . . scaffold32230 WUBlastX DNA_MuDR 1851 2444 32 - . . scaffold32230 WUBlastX DNA_MuDR 1857 2267 81 - . . scaffold32230 WUBlastX DNA_MuDR 2553 2771 76 - . . scaffold32230 WUBlastX DNA_MuDR 2553 2810 68 - . . scaffold32230 WUBlastX LTR_Gypsy 5175 5303 20 + . . scaffold32230 WUBlastX LTR_Gypsy-Cigr 5199 5948 216 + . . scaffold32230 WUBlastX LTR_Gypsy 5969 6271 145 + . . scaffold32230 WUBlastX LTR_Gypsy 6023 6289 180 + . . scaffold32230 WUBlastX LTR_Gypsy 6283 9687 2088 + . . scaffold32230 WUBlastX LTR_Gypsy 10813 11091 150 + . . scaffold32282 WUBlastX LINE_L2 80 325 34 + . . scaffold32282 WUBlastX LINE_CR1-L2 140 454 88 + . . scaffold32282 WUBlastX LINE_CR1-L2 427 567 22 + . . scaffold32282 WUBlastX LINE_CR1 439 603 21 + . . scaffold32282 WUBlastX LINE_CR1 642 917 83 + . . scaffold32282 WUBlastX LINE_L2 895 1152 130 + . . scaffold32282 WUBlastX LINE_CR1 967 1218 24 + . . scaffold32282 WUBlastX LINE_CR1 1198 1389 63 + . . scaffold32282 WUBlastX LINE_CR1 1237 1371 88 + . . scaffold32282 WUBlastX LINE_CR1-L2 1383 1478 35 + . . scaffold32282 TRF Tandem_Repeat 2127 2589 488 + . . scaffold32282 TRF Tandem_Repeat 2127 2589 448 + . . scaffold32282 WUBlastX DNA_TcMar-Pogo 3852 4325 64 + . . scaffold32282 WUBlastX DNA_TcMar-Pogo 3957 4331 96 + . . scaffold32282 WUBlastX DNA_TcMar-Pogo 4201 4392 39 + . . scaffold32282 WUBlastX DNA_TcMar-Pogo 4379 4591 112 + . . scaffold32282 WUBlastX LTR_Gypsy 6695 6781 22 + . . scaffold32282 WUBlastX LTR_Gypsy-Cigr 7165 7650 124 + . . scaffold32282 WUBlastX LTR_Gypsy 7538 7696 69 + . . scaffold32282 WUBlastX LTR_Gypsy 7553 7732 60 + . . scaffold32282 TRF Tandem_Repeat 8452 8499 96 + . . scaffold323 TRF Tandem_Repeat 8735 8806 135 + . . scaffold323 GLEAN promoter 23508 24507 0.844002 + . ID=CGI_10009772; scaffold323 GLEAN mRNA 24508 39978 0.844002 + . ID=CGI_10009772; scaffold323 TRF Tandem_Repeat 30505 30532 56 + . . scaffold323 TRF Tandem_Repeat 31493 31557 85 + . . scaffold323 TRF Tandem_Repeat 35639 35686 96 + . . scaffold323 GLEAN promoter 42017 43016 0.999949 + . ID=CGI_10009773; scaffold323 GLEAN mRNA 43017 58412 0.999949 + . ID=CGI_10009773; scaffold323 WUBlastX RC_Helitron 51780 52943 725 + . . scaffold323 WUBlastX RC_Helitron 52946 53617 34 + . . scaffold323 WUBlastX RC_Helitron 52946 53500 167 + . . scaffold323 TRF Tandem_Repeat 57951 57985 61 + . . scaffold323 TRF Tandem_Repeat 57983 58024 84 + . . scaffold323 GLEAN promoter 68621 69620 0.5 + . ID=CGI_10009774; scaffold323 GLEAN mRNA 69621 74722 0.5 + . ID=CGI_10009774; scaffold323 GLEAN promoter 78404 79403 0.481188 + . ID=CGI_10009775; scaffold323 GLEAN mRNA 79404 79751 0.481188 + . ID=CGI_10009775; scaffold323 GLEAN promoter 86574 87573 1 + . ID=CGI_10009776; scaffold323 TRF Tandem_Repeat 86770 86871 204 + . . scaffold323 GLEAN mRNA 87574 88554 1 + . ID=CGI_10009776; scaffold323 GLEAN mRNA 90717 91478 0.678287 - . ID=CGI_10009777; scaffold323 GLEAN promoter 91479 92478 0.678287 - . ID=CGI_10009777; scaffold323 WUBlastX LTR_Gypsy 91759 92451 96 - . . scaffold323 GLEAN mRNA 98602 98910 0.99862 - . ID=CGI_10009778; scaffold323 GLEAN promoter 98911 99910 0.99862 - . ID=CGI_10009778; scaffold323 TRF Tandem_Repeat 107299 107340 84 + . . scaffold323 TRF Tandem_Repeat 109109 109135 54 + . . scaffold323 TRF Tandem_Repeat 109133 109199 134 + . . scaffold323 GLEAN mRNA 122863 123402 0.649599 - . ID=CGI_10009779; scaffold323 WUBlastX DNA_Kolobok-Hyd 123085 123600 58 - . . scaffold323 GLEAN promoter 123403 124402 0.649599 - . ID=CGI_10009779; scaffold323 WUBlastX LINE_L2 129865 130023 47 + . . scaffold323 WUBlastX LINE_L2 129883 130017 66 + . . scaffold323 WUBlastX LINE_L2 130031 130498 107 + . . scaffold323 WUBlastX LINE_L2 131009 131038 22 + . . scaffold323 WUBlastX LINE_L1 136093 136137 26 - . . scaffold323 WUBlastX LINE_L1-Tx1 136348 136569 40 - . . scaffold323 WUBlastX LINE_L1-Tx1 136514 136687 55 - . . scaffold323 WUBlastX LINE_L1 136541 136762 77 - . . scaffold323 WUBlastX LINE_L1-Tx1 136577 136762 83 - . . scaffold323 WUBlastX LINE_L1-Tx1 136613 137386 90 - . . scaffold323 WUBlastX LINE_L1 136772 137320 140 - . . scaffold323 WUBlastX LINE_L1-Tx1 136881 138404 128 - . . scaffold323 WUBlastX LINE_L1-Tx1 136881 137933 246 - . . scaffold323 WUBlastX LINE_L1-Tx1 137917 138984 68 - . . scaffold323 WUBlastX LINE_L1-Tx1 138999 139082 35 - . . scaffold323 GLEAN promoter 148591 149590 0.57323 + . ID=CGI_10009780; scaffold323 GLEAN mRNA 149591 150976 0.57323 + . ID=CGI_10009780; scaffold323 TRF Tandem_Repeat 178077 178903 738 + . . scaffold323 TRF Tandem_Repeat 178083 178823 929 + . . scaffold323 TRF Tandem_Repeat 178963 179000 58 + . . scaffold323 WUBlastX LINE_RTE-X 188018 188182 83 + . . scaffold323 WUBlastX LINE_RTE-X 188027 188212 51 + . . scaffold323 WUBlastX LINE_CR1 190587 190703 26 + . . scaffold323 WUBlastX LINE_RTE-X 190606 190935 108 + . . scaffold323 WUBlastX LINE_RTE-X 190696 190950 118 + . . scaffold323 WUBlastX LINE_RTE-X 190916 191092 122 + . . scaffold323 WUBlastX LINE_RTE-X 191091 191984 57 + . . scaffold323 WUBlastX LINE_RTE-X 191097 191732 156 + . . scaffold323 WUBlastX LINE_RTE-X 192070 192255 30 + . . scaffold323 WUBlastX LINE_RTE-X 192100 192252 46 + . . scaffold323 TRF Tandem_Repeat 192282 192331 64 + . . scaffold323 GLEAN promoter 193074 194073 0.491426 + . ID=CGI_10009781; scaffold323 GLEAN mRNA 194074 196597 0.491426 + . ID=CGI_10009781; scaffold323 TRF Tandem_Repeat 194248 194459 286 + . . scaffold323 TRF Tandem_Repeat 195294 195543 335 + . . scaffold323 TRF Tandem_Repeat 195298 195543 286 + . . scaffold323 TRF Tandem_Repeat 206724 207073 538 + . . scaffold323 TRF Tandem_Repeat 206724 207075 461 + . . scaffold323 WUBlastX LINE_L2 207908 208093 47 + . . scaffold323 WUBlastX DNA_hAT-Tip100 212117 212518 103 + . . scaffold323 WUBlastX DNA_hAT-Tip100 212506 212949 257 + . . scaffold323 WUBlastX DNA_hAT-Tip100 212928 213050 50 + . . scaffold323 WUBlastX DNA_hAT-Tip100 213931 214137 102 + . . scaffold323 WUBlastX DNA_TcMar-Tc2 215925 216770 95 + . . scaffold323 WUBlastX DNA_TcMar-Tc2 216027 216731 99 + . . scaffold323 WUBlastX DNA_TcMar-Tc2 216773 216973 75 + . . scaffold323 TRF Tandem_Repeat 218238 218271 50 + . . scaffold323 TRF Tandem_Repeat 220896 221629 1153 + . . scaffold323 TRF Tandem_Repeat 241096 241835 778 + . . scaffold32300 GLEAN mRNA 1693 4220 1 - . ID=CGI_10000878; scaffold32300 GLEAN promoter 2775 3774 0.999676 + . ID=CGI_10000879; scaffold32300 GLEAN mRNA 3775 9281 0.999676 + . ID=CGI_10000879; scaffold32300 GLEAN promoter 4221 5220 1 - . ID=CGI_10000878; scaffold32300 GLEAN mRNA 10008 10525 1 - . ID=CGI_10000880; scaffold32300 WUBlastX DNA_hAT-Ac 10298 10576 78 - . . scaffold32300 GLEAN promoter 10526 11280 1 - . ID=CGI_10000880; scaffold32346 TRF Tandem_Repeat 2614 3230 726 + . . scaffold32346 TRF Tandem_Repeat 3498 3950 780 + . . scaffold32346 TRF Tandem_Repeat 5620 5654 70 + . . scaffold32346 WUBlastX DNA_PiggyBac 5718 6008 71 - . . scaffold32346 WUBlastX DNA_PiggyBac 5733 6059 48 - . . scaffold32356 TRF Tandem_Repeat 2581 2792 361 + . . scaffold32356 WUBlastX LTR_Pao 4053 4136 23 - . . scaffold32356 WUBlastX LTR_Pao 4160 4303 48 - . . scaffold32356 WUBlastX LTR_Pao 4202 4318 52 - . . scaffold32356 WUBlastX LTR_Pao 4272 5075 747 - . . scaffold32356 TRF Tandem_Repeat 8235 8286 104 + . . scaffold32356 TRF Tandem_Repeat 9124 9174 75 + . . scaffold32356 TRF Tandem_Repeat 9291 9325 70 + . . scaffold32356 TRF Tandem_Repeat 9891 9930 80 + . . scaffold32356 TRF Tandem_Repeat 9998 10029 64 + . . scaffold324 GLEAN promoter 1 77 0.999676 + . ID=CGI_10016182; scaffold324 GLEAN mRNA 78 14304 0.999676 + . ID=CGI_10016182; scaffold324 TRF Tandem_Repeat 118 158 55 + . . scaffold324 GLEAN promoter 13667 14666 0.99924 + . ID=CGI_10016183; scaffold324 GLEAN mRNA 14667 47702 0.99924 + . ID=CGI_10016183; scaffold324 TRF Tandem_Repeat 18773 18829 105 + . . scaffold324 TRF Tandem_Repeat 18880 18946 59 + . . scaffold324 TRF Tandem_Repeat 18897 18967 53 + . . scaffold324 GLEAN mRNA 27225 29822 0.872416 - . ID=CGI_10016184; scaffold324 GLEAN promoter 29823 30822 0.872416 - . ID=CGI_10016184; scaffold324 GLEAN mRNA 32735 33789 0.872425 - . ID=CGI_10016185; scaffold324 GLEAN promoter 33790 34789 0.872425 - . ID=CGI_10016185; scaffold324 TRF Tandem_Repeat 36344 36436 100 + . . scaffold324 TRF Tandem_Repeat 39940 39966 54 + . . scaffold324 TRF Tandem_Repeat 41848 41889 50 + . . scaffold324 TRF Tandem_Repeat 55632 55728 194 + . . scaffold324 TRF Tandem_Repeat 72579 72796 70 + . . scaffold324 TRF Tandem_Repeat 72660 72750 75 + . . scaffold324 TRF Tandem_Repeat 75930 75980 93 + . . scaffold324 TRF Tandem_Repeat 75978 76054 147 + . . scaffold324 TRF Tandem_Repeat 86669 86749 81 + . . scaffold324 GLEAN promoter 87880 88879 0.84635 + . ID=CGI_10016186; scaffold324 GLEAN mRNA 88880 91307 0.84635 + . ID=CGI_10016186; scaffold324 TRF Tandem_Repeat 89650 89688 78 + . . scaffold324 TRF Tandem_Repeat 89687 89721 70 + . . scaffold324 TRF Tandem_Repeat 93574 93600 54 + . . scaffold324 GLEAN promoter 99625 100624 0.543376 + . ID=CGI_10016187; scaffold324 GLEAN mRNA 100625 117158 0.543376 + . ID=CGI_10016187; scaffold324 TRF Tandem_Repeat 102718 102759 84 + . . scaffold324 GLEAN promoter 116418 117417 0.544094 + . ID=CGI_10016188; scaffold324 GLEAN mRNA 117418 119152 0.544094 + . ID=CGI_10016188; scaffold324 GLEAN mRNA 130061 130312 0.649598 - . ID=CGI_10016189; scaffold324 GLEAN promoter 130313 131312 0.649598 - . ID=CGI_10016189; scaffold324 GLEAN promoter 144683 145682 1 + . ID=CGI_10016190; scaffold324 GLEAN mRNA 145683 151319 1 + . ID=CGI_10016190; scaffold324 TRF Tandem_Repeat 150146 150290 209 + . . scaffold324 GLEAN mRNA 178684 180925 0.700799 - . ID=CGI_10016191; scaffold324 TRF Tandem_Repeat 179534 179572 78 + . . scaffold324 GLEAN promoter 180926 181925 0.700799 - . ID=CGI_10016191; scaffold324 GLEAN promoter 181415 182414 1 + . ID=CGI_10016192; scaffold324 GLEAN mRNA 182415 187187 1 + . ID=CGI_10016192; scaffold324 TRF Tandem_Repeat 183765 183821 68 + . . scaffold324 TRF Tandem_Repeat 188527 188765 121 + . . scaffold324 TRF Tandem_Repeat 188528 188768 410 + . . scaffold324 TRF Tandem_Repeat 188555 188766 126 + . . scaffold324 TRF Tandem_Repeat 190062 190300 442 + . . scaffold324 GLEAN promoter 190533 191532 0.999675 + . ID=CGI_10016193; scaffold324 TRF Tandem_Repeat 190915 191006 139 + . . scaffold324 GLEAN mRNA 191533 199416 0.999675 + . ID=CGI_10016193; scaffold324 GLEAN promoter 199776 200775 0.904466 + . ID=CGI_10016194; scaffold324 GLEAN mRNA 200776 215445 0.904466 + . ID=CGI_10016194; scaffold324 GLEAN promoter 216410 217409 0.999676 + . ID=CGI_10016195; scaffold324 GLEAN mRNA 217410 223946 0.999676 + . ID=CGI_10016195; scaffold324 TRF Tandem_Repeat 218434 218499 116 + . . scaffold324 TRF Tandem_Repeat 218435 218496 72 + . . scaffold324 GLEAN promoter 223023 224022 1 + . ID=CGI_10016196; scaffold324 GLEAN mRNA 224023 237203 1 + . ID=CGI_10016196; scaffold324 TRF Tandem_Repeat 224701 224787 104 + . . scaffold324 TRF Tandem_Repeat 224873 225002 172 + . . scaffold324 TRF Tandem_Repeat 224879 225050 168 + . . scaffold324 TRF Tandem_Repeat 225062 225239 248 + . . scaffold324 GLEAN promoter 238619 239618 0.937847 + . ID=CGI_10016197; scaffold324 GLEAN mRNA 239619 241098 0.937847 + . ID=CGI_10016197; scaffold324 GLEAN promoter 242229 243228 0.999999 + . ID=CGI_10016198; scaffold324 GLEAN mRNA 243229 244926 0.999999 + . ID=CGI_10016198; scaffold324 TRF Tandem_Repeat 251339 251409 108 + . . scaffold324 TRF Tandem_Repeat 251531 251582 97 + . . scaffold324 TRF Tandem_Repeat 251582 251619 76 + . . scaffold324 WUBlastX DNA_TcMar-Tc1 254688 254909 38 + . . scaffold324 WUBlastX DNA_TcMar-Tc1 254709 254819 55 + . . scaffold324 WUBlastX DNA_TcMar-Tc1 254712 254990 25 + . . scaffold324 GLEAN promoter 258947 259946 0.83621 + . ID=CGI_10016199; scaffold324 GLEAN mRNA 259947 261350 0.83621 + . ID=CGI_10016199; scaffold324 GLEAN promoter 264905 265904 1 + . ID=CGI_10016200; scaffold324 GLEAN mRNA 265905 277335 1 + . ID=CGI_10016200; scaffold324 TRF Tandem_Repeat 268152 268204 99 + . . scaffold324 TRF Tandem_Repeat 269375 269424 84 + . . scaffold324 TRF Tandem_Repeat 272131 272185 101 + . . scaffold324 TRF Tandem_Repeat 297235 297880 823 + . . scaffold324 GLEAN promoter 297714 298713 0.620588 + . ID=CGI_10016201; scaffold324 GLEAN mRNA 298714 323480 0.620588 + . ID=CGI_10016201; scaffold324 TRF Tandem_Repeat 301122 301733 830 + . . scaffold324 TRF Tandem_Repeat 310730 310878 123 + . . scaffold324 GLEAN promoter 326352 327351 0.999529 + . ID=CGI_10016203; scaffold324 GLEAN mRNA 327288 335725 1 - . ID=CGI_10016202; scaffold324 GLEAN mRNA 327352 342739 0.999529 + . ID=CGI_10016203; scaffold324 GLEAN promoter 335726 336725 1 - . ID=CGI_10016202; scaffold324 TRF Tandem_Repeat 339624 339677 108 + . . scaffold324 GLEAN mRNA 345171 348549 1 - . ID=CGI_10016204; scaffold324 GLEAN promoter 348550 349549 1 - . ID=CGI_10016204; scaffold324 TRF Tandem_Repeat 349923 349990 136 + . . scaffold324 WUBlastX LINE_L1-Tx1 362646 363977 208 + . . scaffold324 WUBlastX LINE_L1-Tx1 363456 364085 104 + . . scaffold324 WUBlastX LINE_L1-Tx1 363973 364518 93 + . . scaffold324 WUBlastX LINE_L1-Tx1 364865 365095 42 + . . scaffold324 TRF Tandem_Repeat 366162 366218 69 + . . scaffold324 GLEAN promoter 380179 381178 0.573153 + . ID=CGI_10016205; scaffold324 GLEAN mRNA 381179 385897 0.573153 + . ID=CGI_10016205; scaffold324 TRF Tandem_Repeat 392753 392886 51 + . . scaffold324 TRF Tandem_Repeat 392753 392857 59 + . . scaffold324 TRF Tandem_Repeat 394622 394667 92 + . . scaffold324 WUBlastX LINE_L1-Tx1 398106 398330 50 + . . scaffold324 WUBlastX LINE_L1-Tx1 398166 398504 130 + . . scaffold324 WUBlastX LINE_L1 398443 399342 136 + . . scaffold324 WUBlastX LINE_L1-Tx1 398608 399342 496 + . . scaffold324 WUBlastX LINE_L1-Tx1 399365 399931 222 + . . scaffold324 WUBlastX LINE_L1-Tx1 399844 401094 100 + . . scaffold324 GLEAN promoter 412018 413017 0.999999 + . ID=CGI_10016206; scaffold324 GLEAN mRNA 413018 417552 0.999999 + . ID=CGI_10016206; scaffold324 TRF Tandem_Repeat 421230 421268 78 + . . scaffold324 WUBlastX LINE_RTE-BovB 427632 427889 222 + . . scaffold324 WUBlastX LINE_RTE-BovB 427858 428238 278 + . . scaffold324 WUBlastX LINE_RTE-BovB 428223 428309 24 + . . scaffold324 WUBlastX LINE_RTE-BovB 428309 428596 161 + . . scaffold324 TRF Tandem_Repeat 434181 434240 120 + . . scaffold324 TRF Tandem_Repeat 436444 436554 64 + . . scaffold324 WUBlastX LINE_L1-Tx1 450560 450796 58 + . . scaffold32410 GLEAN promoter 1 59 1 + . ID=CGI_10000886; scaffold32410 GLEAN mRNA 60 10575 1 + . ID=CGI_10000886; scaffold32436 WUBlastX LTR_Ngaro 473 1408 213 + . . scaffold32470 GLEAN promoter 1 175 1 + . ID=CGI_10000898; scaffold32470 GLEAN mRNA 176 4292 1 + . ID=CGI_10000898; scaffold32470 WUBlastX LTR_Gypsy 1135 1563 91 - . . scaffold32470 WUBlastX LTR_Gypsy 1221 1442 95 - . . scaffold32470 WUBlastX LTR_Gypsy 1269 1460 108 - . . scaffold32488 WUBlastX LINE_R2 90 191 26 - . . scaffold32488 WUBlastX LINE_CR1 114 644 319 - . . scaffold32488 WUBlastX LINE_CR1 629 3289 1432 - . . scaffold32488 WUBlastX LINE_CR1 1931 3535 20 - . . scaffold32488 GLEAN mRNA 5990 10777 0.98602 - . ID=CGI_10000899; scaffold32488 WUBlastX DNA_MuDR 6023 6379 58 - . . scaffold32488 GLEAN promoter 10778 11759 0.98602 - . ID=CGI_10000899; scaffold32520 GLEAN promoter 1 838 0.994137 + . ID=CGI_10000901; scaffold32520 GLEAN mRNA 839 7009 0.994137 + . ID=CGI_10000901; scaffold32526 GLEAN promoter 2725 3724 0.997331 + . ID=CGI_10000914; scaffold32526 GLEAN mRNA 3725 5282 0.997331 + . ID=CGI_10000914; scaffold32526 TRF Tandem_Repeat 8543 8710 62 + . . scaffold32526 TRF Tandem_Repeat 9651 9693 86 + . . scaffold32526 TRF Tandem_Repeat 9807 9852 92 + . . scaffold32526 TRF Tandem_Repeat 10902 11079 80 + . . scaffold32526 TRF Tandem_Repeat 10951 11079 77 + . . scaffold32526 WUBlastX LTR_Gypsy 11116 11970 711 - . . scaffold32530 GLEAN mRNA 667 11598 0.999949 - . ID=CGI_10000907; scaffold32530 GLEAN promoter 11599 11880 0.999949 - . ID=CGI_10000907; scaffold32546 TRF Tandem_Repeat 2037 2136 164 + . . scaffold32546 TRF Tandem_Repeat 2996 3324 472 + . . scaffold32546 WUBlastX LINE_L1-Tx1 4848 5627 32 - . . scaffold32546 WUBlastX LINE_L1-Tx1 4848 5438 45 - . . scaffold32546 WUBlastX LINE_L1-Tx1 5636 5944 45 - . . scaffold32546 WUBlastX LINE_L1 5946 8468 412 - . . scaffold32546 WUBlastX LINE_L1-Tx1 7359 8465 560 - . . scaffold32546 GLEAN mRNA 8889 9134 0.999372 - . ID=CGI_10000911; scaffold32546 GLEAN promoter 9135 10134 0.999372 - . ID=CGI_10000911; scaffold32546 WUBlastX LINE_L1 9383 9940 129 - . . scaffold32546 WUBlastX LINE_L2 9428 10033 51 - . . scaffold32546 TRF Tandem_Repeat 10485 10527 54 + . . scaffold32550 WUBlastX LTR_Ngaro 63 479 147 - . . scaffold32550 WUBlastX LTR_Ngaro 491 598 29 - . . scaffold32550 WUBlastX LTR_Ngaro 509 679 42 - . . scaffold32550 WUBlastX LTR_Ngaro 521 613 50 - . . scaffold32550 WUBlastX LTR_Ngaro 1036 1152 73 - . . scaffold32550 WUBlastX LTR_Ngaro 1148 1441 111 - . . scaffold32550 WUBlastX LINE_L2-Hydra 2949 3419 58 - . . scaffold32550 WUBlastX LINE_RTE-X 3102 3488 78 - . . scaffold32550 WUBlastX LINE_RTE-X 3120 3431 125 - . . scaffold32550 TRF Tandem_Repeat 3830 3880 93 + . . scaffold32550 TRF Tandem_Repeat 5114 5144 53 + . . scaffold32550 TRF Tandem_Repeat 5142 5166 50 + . . scaffold32550 WUBlastX LINE_RTE-X 6228 6989 86 - . . scaffold32550 WUBlastX LINE_RTE-X 6450 6989 117 - . . scaffold32550 WUBlastX LINE_RTE-X 6714 6992 131 - . . scaffold32550 WUBlastX LINE_RTE-X 6934 7224 59 - . . scaffold32550 WUBlastX LINE_RTE-BovB 7247 7372 42 - . . scaffold32550 WUBlastX LINE_RTE-X 7247 7435 32 - . . scaffold32550 WUBlastX LINE_RTE-BovB 7250 7402 39 - . . scaffold32586 GLEAN promoter 736 1735 0.618186 + . ID=CGI_10000917; scaffold32586 GLEAN mRNA 1736 2161 0.618186 + . ID=CGI_10000917; scaffold32586 WUBlastX LINE_CR1-L2 8678 8860 55 + . . scaffold32586 WUBlastX LINE_L2 9032 9139 21 + . . scaffold326 GLEAN promoter 1 36 0.855561 + . ID=CGI_10003294; scaffold326 GLEAN mRNA 37 8806 0.855561 + . ID=CGI_10003294; scaffold326 WUBlastX DNA_TcMar-Tc1 406 1149 329 + . . scaffold326 GLEAN mRNA 1915 7442 0.980924 - . ID=CGI_10003295; scaffold326 TRF Tandem_Repeat 2944 2975 55 + . . scaffold326 TRF Tandem_Repeat 4514 6473 2226 + . . scaffold326 TRF Tandem_Repeat 5445 5493 62 + . . scaffold326 TRF Tandem_Repeat 5448 5490 59 + . . scaffold326 TRF Tandem_Repeat 6634 6711 52 + . . scaffold326 GLEAN promoter 7443 8442 0.980924 - . ID=CGI_10003295; scaffold326 TRF Tandem_Repeat 9460 10473 1560 + . . scaffold326 WUBlastX DNA_hAT-Tip100 17548 17868 54 - . . scaffold326 TRF Tandem_Repeat 25356 25408 61 + . . scaffold326 TRF Tandem_Repeat 25365 25408 52 + . . scaffold326 TRF Tandem_Repeat 37083 37120 67 + . . scaffold326 TRF Tandem_Repeat 48127 48165 60 + . . scaffold326 TRF Tandem_Repeat 62770 62794 50 + . . scaffold326 WUBlastX LTR_Gypsy 65512 66399 477 + . . scaffold326 WUBlastX LTR_Gypsy 65515 66594 333 + . . scaffold326 GLEAN promoter 65602 66601 0.649408 + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 66514 66615 35 + . . scaffold326 WUBlastX LTR_Gypsy 66541 66639 25 + . . scaffold326 GLEAN mRNA 66602 67012 0.649408 + . ID=CGI_10003297; scaffold326 WUBlastX LTR_Gypsy 66659 67006 187 + . . scaffold326 TRF Tandem_Repeat 67080 67132 52 + . . scaffold326 TRF Tandem_Repeat 67197 67250 99 + . . scaffold326 TRF Tandem_Repeat 68703 68731 58 + . . scaffold32618 WUBlastX LINE_RTE-X 1126 1389 46 + . . scaffold32618 WUBlastX LINE_RTE-X 1147 1347 64 + . . scaffold32618 WUBlastX LINE_RTE-X 1388 1441 26 + . . scaffold32618 WUBlastX LINE_RTE-X 1400 1441 28 + . . scaffold32618 WUBlastX LINE_RTE-X 1441 1557 39 + . . scaffold32618 WUBlastX LINE_RTE-X 1441 1689 20 + . . scaffold32618 WUBlastX LINE_RTE-X 1444 1578 31 + . . scaffold32618 WUBlastX LINE_RTE-X 1444 1641 28 + . . scaffold32618 TRF Tandem_Repeat 3130 3178 91 + . . scaffold32618 TRF Tandem_Repeat 3189 3262 148 + . . scaffold32632 GLEAN promoter 1 399 1 + . ID=CGI_10000918; scaffold32632 GLEAN mRNA 400 3356 1 + . ID=CGI_10000918; scaffold32646 WUBlastX LINE_L2 1932 2207 49 - . . scaffold32646 WUBlastX LINE_L2 2245 2376 48 - . . scaffold32646 TRF Tandem_Repeat 3152 3618 596 + . . scaffold32666 WUBlastX LINE_Penelope 9219 9572 20 + . . scaffold32666 WUBlastX LINE_Penelope 9276 9599 59 + . . scaffold32666 WUBlastX DNA_Crypton 11440 12225 499 - . . scaffold32688 GLEAN promoter 1 83 1 + . ID=CGI_10000941; scaffold32688 GLEAN mRNA 84 10909 1 + . ID=CGI_10000941; scaffold327 TRF Tandem_Repeat 391 444 90 + . . scaffold327 TRF Tandem_Repeat 672 839 75 + . . scaffold327 TRF Tandem_Repeat 674 899 81 + . . scaffold327 TRF Tandem_Repeat 674 839 90 + . . scaffold327 TRF Tandem_Repeat 679 1291 157 + . . scaffold327 TRF Tandem_Repeat 680 1249 93 + . . scaffold327 TRF Tandem_Repeat 694 837 59 + . . scaffold327 TRF Tandem_Repeat 1012 1076 53 + . . scaffold327 TRF Tandem_Repeat 1043 1159 64 + . . scaffold327 TRF Tandem_Repeat 1244 1306 56 + . . scaffold327 TRF Tandem_Repeat 1344 1428 60 + . . scaffold327 TRF Tandem_Repeat 4484 4522 71 + . . scaffold327 TRF Tandem_Repeat 10483 10696 184 + . . scaffold327 TRF Tandem_Repeat 15942 15986 90 + . . scaffold327 TRF Tandem_Repeat 22188 22275 83 + . . scaffold327 TRF Tandem_Repeat 22230 22275 74 + . . scaffold327 TRF Tandem_Repeat 22505 22614 116 + . . scaffold327 TRF Tandem_Repeat 22505 22614 103 + . . scaffold327 TRF Tandem_Repeat 29150 29380 453 + . . scaffold327 TRF Tandem_Repeat 29727 29774 96 + . . scaffold327 WUBlastX LINE_L2 30399 30899 158 - . . scaffold327 TRF Tandem_Repeat 30940 31047 155 + . . scaffold327 GLEAN promoter 32456 33455 0.991396 + . ID=CGI_10002366; scaffold327 GLEAN mRNA 32653 32952 0.957271 - . ID=CGI_10002365; scaffold327 GLEAN promoter 32953 33952 0.957271 - . ID=CGI_10002365; scaffold327 TRF Tandem_Repeat 33198 33269 144 + . . scaffold327 TRF Tandem_Repeat 33339 33372 68 + . . scaffold327 GLEAN mRNA 33456 36390 0.991396 + . ID=CGI_10002366; scaffold327 WUBlastX LINE_RTE-X 37078 37239 34 + . . scaffold327 WUBlastX LINE_RTE-X 37108 37251 43 + . . scaffold327 WUBlastX LINE_RTE-X 37144 37260 51 + . . scaffold327 WUBlastX LINE_RTE-X 37250 37357 55 + . . scaffold327 WUBlastX LINE_RTE-X 37638 37961 72 + . . scaffold327 WUBlastX LINE_RTE-X 37638 38036 33 + . . scaffold327 WUBlastX LINE_RTE-X 37641 37892 88 + . . scaffold327 WUBlastX LINE_RTE-X 38134 38634 30 - . . scaffold327 WUBlastX LINE_RTE-X 38627 38794 71 - . . scaffold327 WUBlastX LINE_RTE-X 38771 39052 84 - . . scaffold327 TRF Tandem_Repeat 43432 43478 94 + . . scaffold32708 GLEAN mRNA 7043 11374 0.863777 - . ID=CGI_10000943; scaffold32708 GLEAN promoter 11375 12374 0.863777 - . ID=CGI_10000943; scaffold32718 GLEAN promoter 273 1272 0.991288 + . ID=CGI_10000944; scaffold32718 GLEAN mRNA 1273 8099 0.991288 + . ID=CGI_10000944; scaffold32754 WUBlastX LINE_L2 7838 8797 485 - . . scaffold32754 WUBlastX LINE_L2 8207 8920 106 - . . scaffold32754 TRF Tandem_Repeat 9155 9187 66 + . . scaffold32786 TRF Tandem_Repeat 2268 2704 417 + . . scaffold32786 TRF Tandem_Repeat 2308 2704 506 + . . scaffold32786 TRF Tandem_Repeat 2858 3041 185 + . . scaffold32786 WUBlastX DNA_IS4EU 6541 7056 90 + . . scaffold32786 WUBlastX DNA_Kolobok-IS4 7219 8379 167 + . . scaffold32786 WUBlastX DNA_IS4EU 7657 8349 184 + . . scaffold32786 WUBlastX DNA_IS4EU 7744 8325 234 + . . scaffold32786 WUBlastX DNA_IS4EU 9237 9773 339 - . . scaffold328 WUBlastX LINE_RTE-X 1592 1999 71 + . . scaffold32850 GLEAN promoter 1 60 1 + . ID=CGI_10000951; scaffold32850 GLEAN mRNA 61 6772 1 + . ID=CGI_10000951; scaffold32850 GLEAN mRNA 7256 11333 1 - . ID=CGI_10000952; scaffold32850 GLEAN promoter 11334 12333 1 - . ID=CGI_10000952; scaffold32864 GLEAN mRNA 1398 11126 0.952848 - . ID=CGI_10000968; scaffold32864 GLEAN promoter 2611 3610 0.973085 + . ID=CGI_10000969; scaffold32864 GLEAN mRNA 3611 10212 0.973085 + . ID=CGI_10000969; scaffold32864 GLEAN promoter 11127 12126 0.952848 - . ID=CGI_10000968; scaffold32894 GLEAN mRNA 1331 12707 0.969604 - . ID=CGI_10000964; scaffold32894 GLEAN promoter 12708 12836 0.969604 - . ID=CGI_10000964; scaffold329 TRF Tandem_Repeat 2006 2044 78 + . . scaffold329 TRF Tandem_Repeat 8180 8228 98 + . . scaffold329 TRF Tandem_Repeat 10038 10091 72 + . . scaffold329 WUBlastX LINE_RTE-BovB 55674 56360 333 - . . scaffold329 WUBlastX LINE_RTE-BovB 56351 56980 306 - . . scaffold329 WUBlastX LINE_RTE-BovB 56962 57150 69 - . . scaffold329 TRF Tandem_Repeat 70622 70661 71 + . . scaffold329 GLEAN promoter 75446 76445 0.993885 + . ID=CGI_10010574; scaffold329 GLEAN mRNA 76446 79605 0.993885 + . ID=CGI_10010574; scaffold329 WUBlastX DNA_hAT-Tip100 80248 80895 133 - . . scaffold329 WUBlastX DNA_hAT-Tip100 80885 81028 114 - . . scaffold329 WUBlastX DNA_hAT-Tip100 81015 81722 182 - . . scaffold329 TRF Tandem_Repeat 91917 91964 96 + . . scaffold329 TRF Tandem_Repeat 96246 96270 50 + . . scaffold329 WUBlastX DNA_NOF 96961 97044 30 - . . scaffold329 WUBlastX DNA_NOF 97623 97787 41 - . . scaffold329 TRF Tandem_Repeat 103678 103728 102 + . . scaffold329 TRF Tandem_Repeat 105795 107007 1327 + . . scaffold329 TRF Tandem_Repeat 105795 107007 1374 + . . scaffold329 TRF Tandem_Repeat 107849 107892 88 + . . scaffold329 WUBlastX LTR_Gypsy 109898 109978 32 + . . scaffold329 WUBlastX LTR_Ngaro 110959 111126 38 + . . scaffold329 WUBlastX LTR_Ngaro 110959 111093 39 + . . scaffold329 WUBlastX LTR_Ngaro 111258 111338 34 + . . scaffold329 WUBlastX LTR_Ngaro 111398 111559 58 + . . scaffold329 WUBlastX LTR_Ngaro 111615 111719 26 + . . scaffold329 TRF Tandem_Repeat 112898 112947 84 + . . scaffold329 TRF Tandem_Repeat 113328 113371 88 + . . scaffold329 TRF Tandem_Repeat 114819 114872 99 + . . scaffold329 TRF Tandem_Repeat 126923 126957 52 + . . scaffold329 WUBlastX LTR_Ngaro 127575 127934 46 - . . scaffold329 WUBlastX LTR_Ngaro 127824 127934 68 - . . scaffold329 WUBlastX LTR_Ngaro 127939 128049 70 - . . scaffold329 WUBlastX LINE_RTE-X 131434 131586 85 + . . scaffold329 WUBlastX LINE_L1-Tx1 138146 138619 99 - . . scaffold329 WUBlastX LINE_L1-Tx1 138212 138739 31 - . . scaffold329 TRF Tandem_Repeat 143197 143245 98 + . . scaffold329 WUBlastX LINE_L1-Tx1 143408 143842 64 - . . scaffold329 WUBlastX LINE_L1 143510 143839 82 - . . scaffold329 TRF Tandem_Repeat 144137 144169 57 + . . scaffold329 WUBlastX LTR_Pao 146575 146691 55 - . . scaffold329 WUBlastX LTR_Pao 146645 147082 309 - . . scaffold329 WUBlastX LTR_Pao 147060 147470 362 - . . scaffold329 WUBlastX LTR_Pao 147099 147623 156 - . . scaffold329 WUBlastX LTR_Pao 147573 147869 194 - . . scaffold329 WUBlastX LTR_Pao 147624 147914 161 - . . scaffold329 WUBlastX LTR_Pao 147633 147869 225 - . . scaffold329 WUBlastX LTR_Pao 148440 148556 25 - . . scaffold329 WUBlastX LTR_DIRS 148551 148712 37 - . . scaffold329 WUBlastX LTR_DIRS 148939 149262 75 - . . scaffold329 WUBlastX LTR_DIRS 149630 150088 65 - . . scaffold329 WUBlastX LTR_DIRS 150766 151662 158 - . . scaffold329 WUBlastX LTR_DIRS 151662 151952 38 - . . scaffold329 TRF Tandem_Repeat 156652 157934 1355 + . . scaffold329 TRF Tandem_Repeat 157248 158014 757 + . . scaffold329 TRF Tandem_Repeat 169072 169132 50 + . . scaffold329 TRF Tandem_Repeat 170242 170268 54 + . . scaffold329 TRF Tandem_Repeat 181374 182115 867 + . . scaffold329 TRF Tandem_Repeat 190539 190595 114 + . . scaffold329 TRF Tandem_Repeat 196017 196075 100 + . . scaffold329 WUBlastX LINE_L1 196298 197071 104 + . . scaffold329 WUBlastX LINE_L1-Tx1 196811 197071 206 + . . scaffold329 WUBlastX LINE_L1 196832 197116 68 + . . scaffold329 TRF Tandem_Repeat 206127 206159 50 + . . scaffold329 TRF Tandem_Repeat 210360 211363 490 + . . scaffold329 TRF Tandem_Repeat 210599 211420 501 + . . scaffold329 TRF Tandem_Repeat 229451 230937 1469 + . . scaffold329 WUBlastX LTR_Pao 231960 232145 45 + . . scaffold329 WUBlastX LTR_Pao 232121 232225 20 + . . scaffold329 WUBlastX LTR_Pao 232172 232240 29 + . . scaffold329 WUBlastX LTR_Pao 232172 232225 37 + . . scaffold329 WUBlastX LTR_Pao 232233 232277 22 + . . scaffold329 WUBlastX LTR_Pao 232256 232390 61 + . . scaffold329 WUBlastX LTR_Pao 232623 232784 26 + . . scaffold329 TRF Tandem_Repeat 240309 240352 88 + . . scaffold329 WUBlastX LINE_L2 248832 248972 53 + . . scaffold329 WUBlastX LTR_Gypsy 252018 252767 26 + . . scaffold329 WUBlastX LTR_ERV1 252486 252836 67 + . . scaffold329 WUBlastX LTR_ERV1 252567 252917 25 + . . scaffold329 WUBlastX LTR_Gypsy 252975 253637 31 + . . scaffold329 WUBlastX LTR_Gypsy 253179 253466 49 + . . scaffold329 WUBlastX LTR_Gypsy 253278 253439 61 + . . scaffold329 WUBlastX LTR_Gypsy 253311 254399 283 + . . scaffold329 WUBlastX LTR_Gypsy 254162 255439 476 + . . scaffold329 WUBlastX LTR_Gypsy 254396 255436 825 + . . scaffold329 WUBlastX LTR_Gypsy 255868 255969 25 + . . scaffold329 TRF Tandem_Repeat 259456 259502 94 + . . scaffold329 TRF Tandem_Repeat 260893 261067 162 + . . scaffold329 TRF Tandem_Repeat 264500 264530 53 + . . scaffold32900 WUBlastX DNA_Sola 9141 9467 91 + . . scaffold32912 WUBlastX LINE_RTE-X 4217 4417 103 + . . scaffold32912 TRF Tandem_Repeat 4655 4729 132 + . . scaffold32912 WUBlastX LTR_Ngaro 5492 5839 246 + . . scaffold32912 WUBlastX LTR_Ngaro 5498 6100 151 + . . scaffold32912 WUBlastX LTR_Ngaro 6093 6653 368 + . . scaffold32912 WUBlastX LINE_RTE-X 9980 10432 36 + . . scaffold32922 TRF Tandem_Repeat 3464 4741 1978 + . . scaffold32922 TRF Tandem_Repeat 5646 5895 92 + . . scaffold32922 WUBlastX LTR_ERV1 7580 7948 43 + . . scaffold32956 GLEAN mRNA 678 6873 0.93784 - . ID=CGI_10000972; scaffold32956 GLEAN promoter 6874 7873 0.93784 - . ID=CGI_10000972; scaffold330 GLEAN promoter 1 578 1 + . ID=CGI_10000364; scaffold330 GLEAN mRNA 579 4299 1 + . ID=CGI_10000364; scaffold33026 WUBlastX DNA_hAT-Tip100 4012 4113 21 - . . scaffold33026 WUBlastX DNA_hAT-Tip100 4174 4236 26 - . . scaffold33026 WUBlastX DNA_hAT-Tip100 4414 5040 175 - . . scaffold33026 WUBlastX DNA_hAT-Tip100 4414 5274 63 - . . scaffold33026 WUBlastX DNA_Sola 9258 9653 99 - . . scaffold33026 TRF Tandem_Repeat 9868 9963 138 + . . scaffold33026 WUBlastX DNA_TcMar-Tc1 12018 12590 265 - . . scaffold33026 WUBlastX DNA_TcMar-Tc1 12620 12889 89 - . . scaffold33030 GLEAN promoter 82 1081 1 + . ID=CGI_10000980; scaffold33030 GLEAN mRNA 1082 4618 1 + . ID=CGI_10000980; scaffold33036 GLEAN promoter 876 1875 0.76238 + . ID=CGI_10000985; scaffold33036 GLEAN mRNA 1876 11676 0.76238 + . ID=CGI_10000985; scaffold33036 TRF Tandem_Repeat 5154 5209 112 + . . scaffold33036 WUBlastX DNA_TcMar-Marin 11477 11740 32 + . . scaffold33036 WUBlastX DNA_TcMar-Marin 11582 11740 44 + . . scaffold33042 WUBlastX LINE_CR1 521 838 75 - . . scaffold33042 TRF Tandem_Repeat 2663 2717 51 + . . scaffold33042 TRF Tandem_Repeat 4213 4279 55 + . . scaffold33042 TRF Tandem_Repeat 4793 4834 84 + . . scaffold33042 TRF Tandem_Repeat 5309 5350 66 + . . scaffold33042 TRF Tandem_Repeat 5505 5533 58 + . . scaffold33042 TRF Tandem_Repeat 7083 7149 62 + . . scaffold33042 TRF Tandem_Repeat 9742 9787 56 + . . scaffold33046 WUBlastX DNA_Maverick 7372 7551 43 + . . scaffold33046 WUBlastX DNA_Maverick 11188 11712 34 + . . scaffold33046 WUBlastX DNA_Maverick 11581 11712 77 + . . scaffold33046 WUBlastX DNA_Maverick 11727 11942 92 + . . scaffold33046 WUBlastX DNA_Maverick 11742 11978 71 + . . scaffold33050 WUBlastX DNA_NOF? 2109 2678 334 + . . scaffold33050 WUBlastX DNA_NOF? 3043 3114 42 + . . scaffold33050 WUBlastX DNA_NOF? 4569 4748 39 + . . scaffold33050 WUBlastX LTR_Gypsy 5509 5838 58 + . . scaffold33050 WUBlastX LTR_Gypsy 5590 6282 83 + . . scaffold33050 TRF Tandem_Repeat 12094 12266 305 + . . scaffold33052 GLEAN mRNA 3902 10862 0.974446 - . ID=CGI_10000987; scaffold33052 GLEAN promoter 10863 11862 0.974446 - . ID=CGI_10000987; scaffold33056 TRF Tandem_Repeat 1610 1641 64 + . . scaffold33056 WUBlastX LINE_L1-Tx1 1756 2547 107 - . . scaffold33056 WUBlastX LINE_L1-Tx1 2556 4784 988 - . . scaffold33056 WUBlastX LINE_L1-Tx1 4707 4814 26 - . . scaffold33056 TRF Tandem_Repeat 5253 5297 63 + . . scaffold33056 WUBlastX DNA_Harbinger 7253 7732 70 + . . scaffold33056 TRF Tandem_Repeat 8110 9399 1821 + . . scaffold33064 TRF Tandem_Repeat 777 831 110 + . . scaffold33064 WUBlastX LINE_RTE-X 1017 1184 24 - . . scaffold33064 WUBlastX LINE_RTE-X 1041 1148 28 - . . scaffold33064 WUBlastX LINE_RTE-X 1050 1115 39 - . . scaffold33064 WUBlastX LINE_Proto2 1711 1803 28 - . . scaffold33064 WUBlastX LINE_RTE-X 1738 1959 37 - . . scaffold33064 WUBlastX LINE_RTE-X 1860 2000 68 - . . scaffold33064 TRF Tandem_Repeat 2779 2866 97 + . . scaffold33064 WUBlastX LINE_L1-Tx1 4646 5434 107 - . . scaffold33064 WUBlastX LINE_L1-Tx1 5451 5906 199 - . . scaffold33064 WUBlastX LINE_L1-Tx1 5902 6114 45 - . . scaffold33064 WUBlastX LINE_L1 5996 6757 162 - . . scaffold33064 WUBlastX LINE_L1-Tx1 6116 6820 539 - . . scaffold33064 WUBlastX LINE_Jockey 7727 7795 22 - . . scaffold33066 GLEAN promoter 1 493 1 + . ID=CGI_10000982; scaffold33066 GLEAN mRNA 494 3740 1 + . ID=CGI_10000982; scaffold33066 GLEAN mRNA 4217 11139 0.558407 - . ID=CGI_10000983; scaffold33066 GLEAN promoter 11140 12139 0.558407 - . ID=CGI_10000983; scaffold33082 GLEAN promoter 46 1045 0.584166 + . ID=CGI_10000988; scaffold33082 GLEAN mRNA 1046 12947 0.584166 + . ID=CGI_10000988; scaffold33082 WUBlastX LINE_RTE-X 6219 6572 85 - . . scaffold33082 WUBlastX LINE_RTE-X 6330 6572 130 - . . scaffold33082 WUBlastX LINE_RTE-X 6605 7423 493 - . . scaffold33082 WUBlastX LINE_RTE-X 7447 7728 162 - . . scaffold33082 WUBlastX LINE_CR1 7465 8112 40 - . . scaffold33082 WUBlastX LINE_CR1-L2 7483 7776 65 - . . scaffold33090 GLEAN mRNA 9150 12598 0.54446 - . ID=CGI_10000959; scaffold33090 GLEAN promoter 12599 12733 0.54446 - . ID=CGI_10000959; scaffold331 GLEAN mRNA 419 8576 1 - . ID=CGI_10003713; scaffold331 GLEAN promoter 8577 9576 1 - . ID=CGI_10003713; scaffold331 GLEAN mRNA 14531 22984 0.612806 - . ID=CGI_10003714; scaffold331 GLEAN promoter 22985 23984 0.612806 - . ID=CGI_10003714; scaffold331 TRF Tandem_Repeat 23618 23790 202 + . . scaffold331 WUBlastX LINE_L1 23836 24357 57 + . . scaffold331 WUBlastX LINE_L1-Tx1 23926 24462 142 + . . scaffold331 WUBlastX LINE_L1-Tx1 23932 24360 331 + . . scaffold331 WUBlastX LTR_Gypsy-Troyk 24623 28141 3363 + . . scaffold331 TRF Tandem_Repeat 35329 35392 92 + . . scaffold331 WUBlastX LINE_L1-Tx1 35466 36095 277 - . . scaffold331 WUBlastX DNA_En-Spm 37498 37629 33 - . . scaffold331 WUBlastX DNA_En-Spm 37626 38060 116 - . . scaffold331 WUBlastX DNA_En-Spm 37626 37994 132 - . . scaffold331 WUBlastX DNA_En-Spm 38056 38190 34 - . . scaffold331 WUBlastX DNA_En-Spm 38460 38546 26 - . . scaffold331 WUBlastX DNA_En-Spm 38475 38552 26 - . . scaffold331 WUBlastX DNA_En-Spm 38490 38576 20 - . . scaffold331 TRF Tandem_Repeat 42275 42300 52 + . . scaffold331 WUBlastX LTR_Gypsy-Troyk 44912 46180 1150 + . . scaffold331 WUBlastX LINE_Penelope 46387 48183 405 - . . scaffold331 WUBlastX LINE_Penelope 46657 48183 539 - . . scaffold331 TRF Tandem_Repeat 51788 51838 102 + . . scaffold331 TRF Tandem_Repeat 52249 52437 97 + . . scaffold331 GLEAN promoter 54106 55105 0.654733 + . ID=CGI_10003715; scaffold331 GLEAN mRNA 55106 60955 0.654733 + . ID=CGI_10003715; scaffold331 TRF Tandem_Repeat 55938 55989 104 + . . scaffold331 TRF Tandem_Repeat 56242 56273 64 + . . scaffold331 TRF Tandem_Repeat 56300 56333 68 + . . scaffold331 TRF Tandem_Repeat 62211 62278 55 + . . scaffold33108 GLEAN promoter 1 46 1 + . ID=CGI_10000995; scaffold33108 GLEAN mRNA 47 10547 1 + . ID=CGI_10000995; scaffold33108 GLEAN mRNA 9098 9799 0.448986 - . ID=CGI_10000996; scaffold33108 GLEAN promoter 9800 10799 0.448986 - . ID=CGI_10000996; scaffold33132 WUBlastX LINE_L1 2 97 68 + . . scaffold33132 WUBlastX LINE_L1-Tx1 54 2015 812 + . . scaffold33132 GLEAN mRNA 5089 12821 1 - . ID=CGI_10000994; scaffold33132 GLEAN promoter 12822 13411 1 - . ID=CGI_10000994; scaffold33134 GLEAN promoter 269 1268 0.999998 + . ID=CGI_10001004; scaffold33134 GLEAN mRNA 1269 5257 0.999998 + . ID=CGI_10001004; scaffold33134 GLEAN mRNA 6490 13207 1 - . ID=CGI_10001005; scaffold33134 GLEAN promoter 13208 13528 1 - . ID=CGI_10001005; scaffold33146 GLEAN promoter 2730 3729 0.999896 + . ID=CGI_10001002; scaffold33146 GLEAN mRNA 3730 9995 0.999896 + . ID=CGI_10001002; scaffold33154 GLEAN mRNA 4910 11167 1 - . ID=CGI_10000997; scaffold33154 GLEAN promoter 11168 12167 1 - . ID=CGI_10000997; scaffold33158 GLEAN mRNA 112 4140 0.996708 - . ID=CGI_10001011; scaffold33158 GLEAN promoter 4141 5140 0.996708 - . ID=CGI_10001011; scaffold33158 GLEAN mRNA 8519 8905 0.639913 - . ID=CGI_10001012; scaffold33158 GLEAN promoter 8906 9905 0.639913 - . ID=CGI_10001012; scaffold33178 WUBlastX DNA_Maverick 3841 4302 71 + . . scaffold33178 WUBlastX DNA_Maverick 3841 4068 123 + . . scaffold33178 GLEAN promoter 6247 7246 0.998252 + . ID=CGI_10001008; scaffold33178 GLEAN mRNA 7247 12607 0.998252 + . ID=CGI_10001008; scaffold33184 WUBlastX LINE_Penelope 5 610 124 - . . scaffold33184 TRF Tandem_Repeat 945 1006 64 + . . scaffold33184 TRF Tandem_Repeat 945 1016 78 + . . scaffold33192 GLEAN mRNA 6171 11752 1 - . ID=CGI_10001010; scaffold33192 GLEAN promoter 11753 12752 1 - . ID=CGI_10001010; scaffold332 TRF Tandem_Repeat 9585 9646 106 + . . scaffold332 WUBlastX LTR_Gypsy 12066 12167 35 + . . scaffold332 WUBlastX LTR_Gypsy 12109 12429 59 + . . scaffold332 WUBlastX LTR_Gypsy 12259 12447 109 + . . scaffold332 WUBlastX LTR_Gypsy 12450 12638 38 + . . scaffold332 WUBlastX LTR_Gypsy 12656 12862 64 + . . scaffold332 WUBlastX LTR_Gypsy 12757 13110 96 + . . scaffold332 WUBlastX LTR_Gypsy 12877 13110 132 + . . scaffold332 TRF Tandem_Repeat 13234 13302 138 + . . scaffold332 TRF Tandem_Repeat 44797 44825 58 + . . scaffold332 TRF Tandem_Repeat 48468 48508 82 + . . scaffold332 TRF Tandem_Repeat 48556 48607 104 + . . scaffold332 TRF Tandem_Repeat 50308 50350 54 + . . scaffold332 TRF Tandem_Repeat 50542 50594 106 + . . scaffold332 TRF Tandem_Repeat 52109 52150 84 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 62925 63182 113 + . . scaffold332 WUBlastX LINE_CR1-L2 65973 66626 102 - . . scaffold332 WUBlastX LINE_CR1-L2 66147 66620 170 - . . scaffold332 TRF Tandem_Repeat 80024 80071 96 + . . scaffold332 TRF Tandem_Repeat 84597 84621 50 + . . scaffold332 TRF Tandem_Repeat 120415 120462 96 + . . scaffold332 GLEAN mRNA 121475 122786 1 - . ID=CGI_10020878; scaffold332 TRF Tandem_Repeat 122077 122120 88 + . . scaffold332 GLEAN promoter 122787 123786 1 - . ID=CGI_10020878; scaffold332 TRF Tandem_Repeat 129860 129886 54 + . . scaffold332 TRF Tandem_Repeat 135842 136033 284 + . . scaffold332 TRF Tandem_Repeat 135999 136119 170 + . . scaffold332 GLEAN mRNA 137936 147150 1 - . ID=CGI_10020879; scaffold332 TRF Tandem_Repeat 140635 140668 52 + . . scaffold332 GLEAN promoter 147151 148150 1 - . ID=CGI_10020879; scaffold332 WUBlastX LINE_L1-Tx1 148396 149361 203 + . . scaffold332 WUBlastX LINE_L1-Tx1 149291 149383 24 + . . scaffold332 WUBlastX LINE_L1 149501 149941 23 + . . scaffold332 WUBlastX LINE_L1 149548 149655 43 + . . scaffold332 WUBlastX LINE_L1-Tx1 149678 149980 128 + . . scaffold332 WUBlastX LINE_L1-Tx1 149690 149941 129 + . . scaffold332 WUBlastX LINE_L1 150721 150852 46 + . . scaffold332 WUBlastX LINE_L1-Tx1 150751 150873 52 + . . scaffold332 WUBlastX LINE_L1-Tx1 150763 150858 55 + . . scaffold332 WUBlastX LINE_L1-Tx1 150784 150891 26 + . . scaffold332 TRF Tandem_Repeat 151338 151380 86 + . . scaffold332 WUBlastX LINE_Penelope 158977 160515 770 + . . scaffold332 WUBlastX LINE_CR1 164193 164588 224 - . . scaffold332 WUBlastX LINE_CR1 164208 164813 223 - . . scaffold332 TRF Tandem_Repeat 166287 166339 88 + . . scaffold332 TRF Tandem_Repeat 169592 169637 92 + . . scaffold332 TRF Tandem_Repeat 170201 170247 60 + . . scaffold332 TRF Tandem_Repeat 172062 172088 54 + . . scaffold332 TRF Tandem_Repeat 172438 172504 71 + . . scaffold332 WUBlastX LINE_RTE-X 175216 175566 64 + . . scaffold332 WUBlastX LINE_RTE-X 175300 175659 56 + . . scaffold332 WUBlastX LINE_RTE-X 175658 175741 20 + . . scaffold332 WUBlastX LINE_CR1 175891 176109 21 + . . scaffold332 WUBlastX LINE_RTE-X 175945 176142 31 + . . scaffold332 WUBlastX LINE_I 176334 176615 39 + . . scaffold332 WUBlastX LINE_RTE-X 176382 176648 43 + . . scaffold332 WUBlastX LINE_RTE-BovB 176627 176791 44 + . . scaffold332 WUBlastX LINE_RTE-X 176767 176961 30 + . . scaffold332 WUBlastX LINE_RTE-X 177101 177340 22 + . . scaffold332 TRF Tandem_Repeat 182791 182824 52 + . . scaffold332 TRF Tandem_Repeat 184723 184750 56 + . . scaffold332 WUBlastX DNA_Sola 221940 222995 693 + . . scaffold332 WUBlastX DNA_Sola 224218 224736 164 + . . scaffold332 WUBlastX DNA_Sola 224389 224820 150 + . . scaffold332 TRF Tandem_Repeat 228944 229061 67 + . . scaffold332 TRF Tandem_Repeat 247189 247829 900 + . . scaffold332 TRF Tandem_Repeat 262918 262953 54 + . . scaffold332 WUBlastX LINE_L2 271107 271559 33 - . . scaffold332 WUBlastX RC_Helitron 271203 271598 71 - . . scaffold332 WUBlastX RC_Helitron 271580 272017 150 - . . scaffold332 WUBlastX RC_Helitron 272511 272663 22 - . . scaffold332 WUBlastX RC_Helitron 272800 273027 77 - . . scaffold332 WUBlastX DNA_Helitron 272848 273207 43 - . . scaffold332 GLEAN mRNA 282632 290184 0.40014 - . ID=CGI_10020880; scaffold332 WUBlastX LINE_RTE-X 283350 284498 385 + . . scaffold332 WUBlastX LINE_RTE-X 283359 284297 585 + . . scaffold332 WUBlastX LINE_RTE-X 284345 285211 344 + . . scaffold332 GLEAN promoter 290185 291184 0.40014 - . ID=CGI_10020880; scaffold332 GLEAN mRNA 309164 326000 0.993551 - . ID=CGI_10020881; scaffold332 GLEAN promoter 326001 327000 0.993551 - . ID=CGI_10020881; scaffold332 GLEAN mRNA 336711 343163 0.557354 - . ID=CGI_10020882; scaffold332 TRF Tandem_Repeat 337828 337890 56 + . . scaffold332 GLEAN promoter 343164 344163 0.557354 - . ID=CGI_10020882; scaffold332 GLEAN mRNA 347121 362189 0.999624 - . ID=CGI_10020883; scaffold332 TRF Tandem_Repeat 359802 359911 87 + . . scaffold332 GLEAN promoter 362190 363189 0.999624 - . ID=CGI_10020883; scaffold332 TRF Tandem_Repeat 365188 365232 51 + . . scaffold332 GLEAN mRNA 366757 371898 1 - . ID=CGI_10020884; scaffold332 WUBlastX DNA_TcMar-Marin 368182 368427 34 - . . scaffold332 WUBlastX DNA_TcMar-Marin 368188 368364 58 - . . scaffold332 WUBlastX DNA_TcMar-Marin 368424 368492 24 - . . scaffold332 WUBlastX DNA_TcMar-Marin 368609 368776 36 - . . scaffold332 GLEAN promoter 371643 372642 0.999999 + . ID=CGI_10020885; scaffold332 GLEAN promoter 371899 372898 1 - . ID=CGI_10020884; scaffold332 GLEAN mRNA 372643 393661 0.999999 + . ID=CGI_10020885; scaffold332 TRF Tandem_Repeat 372921 372960 71 + . . scaffold332 TRF Tandem_Repeat 373058 373111 108 + . . scaffold332 TRF Tandem_Repeat 393118 393168 102 + . . scaffold332 TRF Tandem_Repeat 393272 393312 82 + . . scaffold332 WUBlastX LINE_RTE-X 398211 398294 23 - . . scaffold332 WUBlastX LINE_RTE-X 398820 399095 79 - . . scaffold332 WUBlastX LINE_RTE-X 399101 399172 21 - . . scaffold332 WUBlastX LINE_RTE-X 399234 399581 25 - . . scaffold332 GLEAN promoter 402551 403550 0.544643 + . ID=CGI_10020886; scaffold332 GLEAN mRNA 403551 412368 0.544643 + . ID=CGI_10020886; scaffold332 WUBlastX LINE_Zorro 404610 404897 24 + . . scaffold332 WUBlastX LINE_L1-Tx1 404655 407564 1091 + . . scaffold332 WUBlastX LINE_L1-Tx1 408121 408456 20 + . . scaffold332 WUBlastX LTR_Ngaro 411163 411711 31 - . . scaffold332 WUBlastX LTR_Ngaro 411163 411621 48 - . . scaffold332 TRF Tandem_Repeat 416989 417324 442 + . . scaffold332 TRF Tandem_Repeat 420597 420649 52 + . . scaffold332 TRF Tandem_Repeat 423417 423456 80 + . . scaffold332 TRF Tandem_Repeat 425881 425925 63 + . . scaffold332 TRF Tandem_Repeat 433358 433448 67 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 445428 446177 278 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 446173 446343 30 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 446206 446427 163 + . . scaffold332 TRF Tandem_Repeat 453207 453266 75 + . . scaffold332 WUBlastX LTR_Ngaro 453974 454150 43 + . . scaffold332 WUBlastX LTR_Ngaro 454119 454331 163 + . . scaffold332 WUBlastX LTR_Ngaro 454119 454472 139 + . . scaffold332 WUBlastX LTR_Ngaro 454391 454645 99 + . . scaffold332 WUBlastX LTR_Ngaro 454653 454802 27 + . . scaffold332 WUBlastX LTR_Ngaro 454789 454950 68 + . . scaffold332 WUBlastX LTR_Ngaro 455689 455856 67 + . . scaffold332 WUBlastX LTR_Ngaro 455716 455841 71 + . . scaffold332 GLEAN promoter 456045 457044 0.618241 + . ID=CGI_10020887; scaffold332 WUBlastX LTR_Ngaro 456058 456639 180 + . . scaffold332 WUBlastX LTR_Ngaro 456160 456639 232 + . . scaffold332 GLEAN mRNA 457045 457272 0.618241 + . ID=CGI_10020887; scaffold332 TRF Tandem_Repeat 459901 459929 51 + . . scaffold332 WUBlastX LINE_RTE-BovB 461103 461612 404 - . . scaffold332 WUBlastX LINE_RTE-BovB 461597 461968 235 - . . scaffold332 WUBlastX LINE_RTE-BovB 463219 463323 97 - . . scaffold332 WUBlastX LINE_RTE-BovB 463293 463589 103 - . . scaffold332 WUBlastX LINE_RTE-BovB 463320 463547 237 - . . scaffold332 TRF Tandem_Repeat 468259 468297 60 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 470109 470342 21 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 470199 470369 25 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 470205 470342 34 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 470631 470783 56 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 470640 471035 36 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 470880 471035 41 + . . scaffold332 WUBlastX DNA_TcMar-Tc1 470910 471107 94 + . . scaffold332 GLEAN mRNA 473022 488072 0.967294 - . ID=CGI_10020888; scaffold332 GLEAN promoter 488073 489072 0.967294 - . ID=CGI_10020888; scaffold332 GLEAN mRNA 488657 489955 0.971661 - . ID=CGI_10020889; scaffold332 GLEAN promoter 489956 490955 0.971661 - . ID=CGI_10020889; scaffold332 WUBlastX LINE_L1-Tx1 496438 497256 106 + . . scaffold332 WUBlastX LINE_L1-Tx1 497298 497798 111 + . . scaffold332 WUBlastX LINE_Penelope 504899 505480 37 - . . scaffold332 WUBlastX LINE_Penelope 506949 507182 28 - . . scaffold332 WUBlastX LINE_Penelope 507187 507237 24 - . . scaffold332 TRF Tandem_Repeat 509799 509877 95 + . . scaffold332 WUBlastX LINE_Penelope 510656 510784 24 + . . scaffold332 TRF Tandem_Repeat 517806 517866 122 + . . scaffold332 TRF Tandem_Repeat 518796 519020 224 + . . scaffold332 WUBlastX DNA_Kolobok 530158 530373 38 - . . scaffold332 WUBlastX DNA_MuDR 533187 534542 200 + . . scaffold332 WUBlastX LINE_L1 542481 542705 59 + . . scaffold332 WUBlastX LINE_L1 542684 542905 26 + . . scaffold332 GLEAN promoter 543095 544094 1 + . ID=CGI_10020890; scaffold332 GLEAN mRNA 544095 556154 1 + . ID=CGI_10020890; scaffold332 TRF Tandem_Repeat 546554 547100 639 + . . scaffold332 TRF Tandem_Repeat 547988 548233 312 + . . scaffold332 TRF Tandem_Repeat 562647 563079 740 + . . scaffold332 GLEAN promoter 575417 576416 0.80456 + . ID=CGI_10020891; scaffold332 GLEAN mRNA 576417 590440 0.80456 + . ID=CGI_10020891; scaffold332 GLEAN mRNA 591587 599464 1 - . ID=CGI_10020892; scaffold332 GLEAN promoter 599465 600464 1 - . ID=CGI_10020892; scaffold332 TRF Tandem_Repeat 600562 600615 108 + . . scaffold332 TRF Tandem_Repeat 602890 602950 122 + . . scaffold332 TRF Tandem_Repeat 606995 607026 64 + . . scaffold332 GLEAN mRNA 611410 614153 1 - . ID=CGI_10020893; scaffold332 GLEAN promoter 614154 615153 1 - . ID=CGI_10020893; scaffold332 GLEAN mRNA 614507 621310 0.999676 - . ID=CGI_10020894; scaffold332 TRF Tandem_Repeat 618499 618540 59 + . . scaffold332 TRF Tandem_Repeat 619019 619044 52 + . . scaffold332 GLEAN promoter 621311 622310 0.999676 - . ID=CGI_10020894; scaffold332 WUBlastX LINE_L1 623179 623382 61 + . . scaffold332 WUBlastX LINE_RTE-X 624315 624770 136 + . . scaffold332 WUBlastX LINE_RTE-X 624360 624728 166 + . . scaffold332 WUBlastX LINE_RTE-X 624916 625074 50 + . . scaffold332 WUBlastX LINE_RTE-X 624940 625080 60 + . . scaffold332 WUBlastX LINE_RTE-X 625163 625807 60 + . . scaffold332 WUBlastX LINE_RTE-X 625259 625765 64 + . . scaffold332 WUBlastX LINE_RTE-X 625352 625765 67 + . . scaffold332 WUBlastX LINE_CR1 625469 625873 27 + . . scaffold332 WUBlastX LINE_RTE-X 625472 625993 22 + . . scaffold332 WUBlastX LINE_CR1 626685 626804 23 + . . scaffold332 WUBlastX LTR_Gypsy 627122 627694 73 + . . scaffold332 WUBlastX LTR_Gypsy 627224 628090 189 + . . scaffold332 WUBlastX LTR_Gypsy 628096 628374 21 + . . scaffold332 WUBlastX LTR_Gypsy 628144 631476 1353 + . . scaffold332 WUBlastX LTR_Gypsy 628708 631497 2135 + . . scaffold332 WUBlastX LTR_Gypsy 630403 631707 373 + . . scaffold332 WUBlastX LINE_CR1 633376 633780 67 + . . scaffold332 WUBlastX LINE_RTE-X 633442 633792 88 + . . scaffold332 WUBlastX LINE_RTE-X 633571 633837 120 + . . scaffold332 WUBlastX LINE_RTE-X 633571 633792 143 + . . scaffold332 WUBlastX LINE_RTE-X 633770 634156 98 + . . scaffold332 WUBlastX LINE_RTE-X 634011 634301 80 + . . scaffold332 WUBlastX LINE_RTE-X 634035 634793 74 + . . scaffold332 WUBlastX LINE_RTE-X 634557 634802 85 + . . scaffold332 WUBlastX LINE_RTE-X 635099 635401 45 + . . scaffold332 WUBlastX LINE_RTE-X 635099 635290 51 + . . scaffold332 GLEAN mRNA 650409 657638 0.999989 - . ID=CGI_10020895; scaffold332 TRF Tandem_Repeat 656690 656771 137 + . . scaffold332 TRF Tandem_Repeat 656694 656779 95 + . . scaffold332 GLEAN promoter 657639 658638 0.999989 - . ID=CGI_10020895; scaffold332 TRF Tandem_Repeat 657678 657798 140 + . . scaffold332 TRF Tandem_Repeat 658018 658058 66 + . . scaffold332 TRF Tandem_Repeat 658997 659039 86 + . . scaffold332 TRF Tandem_Repeat 659258 659393 148 + . . scaffold332 TRF Tandem_Repeat 665241 666441 1771 + . . scaffold33224 WUBlastX LINE_Penelope 141 458 31 - . . scaffold33224 WUBlastX LINE_Penelope 252 443 37 - . . scaffold33224 TRF Tandem_Repeat 6397 6511 212 + . . scaffold33238 GLEAN mRNA 2534 9926 0.354772 - . ID=CGI_10001023; scaffold33238 GLEAN promoter 9927 10926 0.354772 - . ID=CGI_10001023; scaffold33242 GLEAN mRNA 923 7324 0.998658 - . ID=CGI_10001015; scaffold33242 TRF Tandem_Repeat 2211 2242 64 + . . scaffold33242 GLEAN promoter 7325 8324 0.998658 - . ID=CGI_10001015; scaffold33242 WUBlastX LINE_L1-Tx1 13142 13726 235 + . . scaffold33248 GLEAN promoter 413 1412 0.997949 + . ID=CGI_10000979; scaffold33248 GLEAN mRNA 1413 11752 0.997949 + . ID=CGI_10000979; scaffold33254 GLEAN mRNA 883 7946 0.999624 - . ID=CGI_10001018; scaffold33254 GLEAN promoter 7947 8946 0.999624 - . ID=CGI_10001018; scaffold33254 GLEAN mRNA 8087 8914 0.558344 - . ID=CGI_10001019; scaffold33254 GLEAN promoter 8915 9914 0.558344 - . ID=CGI_10001019; scaffold33254 GLEAN mRNA 9497 10405 0.999372 - . ID=CGI_10001020; scaffold33254 GLEAN promoter 10406 11405 0.999372 - . ID=CGI_10001020; scaffold333 GLEAN mRNA 606 1154 0.991151 - . ID=CGI_10001125; scaffold333 GLEAN promoter 1155 2154 0.991151 - . ID=CGI_10001125; scaffold33304 GLEAN mRNA 145 13470 0.997325 - . ID=CGI_10001016; scaffold33304 GLEAN promoter 13471 13735 0.997325 - . ID=CGI_10001016; scaffold33340 GLEAN mRNA 9675 10397 0.993508 - . ID=CGI_10001046; scaffold33340 GLEAN promoter 10398 11397 0.993508 - . ID=CGI_10001046; scaffold33342 GLEAN mRNA 1133 2800 1 - . ID=CGI_10001047; scaffold33342 GLEAN promoter 2801 3800 1 - . ID=CGI_10001047; scaffold33342 GLEAN mRNA 6619 10718 0.991284 - . ID=CGI_10001048; scaffold33342 GLEAN promoter 10719 11718 0.991284 - . ID=CGI_10001048; scaffold33346 GLEAN promoter 1 12 1 + . ID=CGI_10001059; scaffold33346 GLEAN mRNA 13 1210 1 + . ID=CGI_10001059; scaffold33346 GLEAN promoter 5641 6640 0.618186 + . ID=CGI_10001060; scaffold33346 GLEAN mRNA 6641 6835 0.618186 + . ID=CGI_10001060; scaffold33352 GLEAN promoter 415 1414 0.989803 + . ID=CGI_10001052; scaffold33352 GLEAN mRNA 1415 7908 0.989803 + . ID=CGI_10001052; scaffold33352 TRF Tandem_Repeat 5356 5397 84 + . . scaffold33352 GLEAN mRNA 11188 11829 0.999998 - . ID=CGI_10001053; scaffold33352 GLEAN promoter 11830 12829 0.999998 - . ID=CGI_10001053; scaffold33352 WUBlastX LINE_Jockey 12767 13519 143 + . . scaffold33352 WUBlastX LINE_L2 12887 14059 739 + . . scaffold33360 WUBlastX LINE_L2 3 602 204 + . . scaffold33360 WUBlastX LINE_L2 946 1761 376 - . . scaffold33360 WUBlastX LINE_CR1-L2 1745 2125 143 - . . scaffold33360 GLEAN promoter 4269 5268 0.896434 + . ID=CGI_10001073; scaffold33360 GLEAN mRNA 5269 6217 0.896434 + . ID=CGI_10001073; scaffold33360 TRF Tandem_Repeat 9077 9140 128 + . . scaffold33360 GLEAN promoter 10191 11190 0.999256 + . ID=CGI_10001074; scaffold33360 GLEAN mRNA 11191 13928 0.999256 + . ID=CGI_10001074; scaffold33364 GLEAN promoter 2076 3075 0.998821 + . ID=CGI_10001091; scaffold33364 GLEAN mRNA 3076 14594 0.998821 + . ID=CGI_10001091; scaffold33382 TRF Tandem_Repeat 4771 4823 106 + . . scaffold33382 TRF Tandem_Repeat 8074 8341 500 + . . scaffold33382 TRF Tandem_Repeat 8356 8840 835 + . . scaffold33382 WUBlastX LTR_Gypsy 9202 10305 276 - . . scaffold33382 WUBlastX LTR_Gypsy 9949 10446 24 - . . scaffold33382 WUBlastX LTR_ERV1 10003 10362 30 - . . scaffold33390 GLEAN promoter 3309 4308 1 + . ID=CGI_10001056; scaffold33390 GLEAN mRNA 4309 13834 1 + . ID=CGI_10001056; scaffold334 GLEAN promoter 12893 13892 0.999243 + . ID=CGI_10025907; scaffold334 GLEAN mRNA 13893 19468 0.999243 + . ID=CGI_10025907; scaffold334 TRF Tandem_Repeat 18120 18959 896 + . . scaffold334 TRF Tandem_Repeat 19474 19993 562 + . . scaffold334 WUBlastX LTR_Gypsy 44354 44800 64 + . . scaffold334 WUBlastX LTR_Gypsy 44357 44542 100 + . . scaffold334 GLEAN mRNA 53208 56380 0.933083 - . ID=CGI_10025908; scaffold334 TRF Tandem_Repeat 56062 56117 112 + . . scaffold334 GLEAN promoter 56381 57380 0.933083 - . ID=CGI_10025908; scaffold334 TRF Tandem_Repeat 57868 57913 92 + . . scaffold334 TRF Tandem_Repeat 61387 61725 468 + . . scaffold334 GLEAN promoter 62452 63451 0.851915 + . ID=CGI_10025909; scaffold334 GLEAN mRNA 63452 74893 0.851915 + . ID=CGI_10025909; scaffold334 TRF Tandem_Repeat 64558 65256 1071 + . . scaffold334 TRF Tandem_Repeat 67308 67566 419 + . . scaffold334 TRF Tandem_Repeat 67308 67665 452 + . . scaffold334 TRF Tandem_Repeat 67308 67665 452 + . . scaffold334 TRF Tandem_Repeat 67565 67665 107 + . . scaffold334 TRF Tandem_Repeat 68220 69308 806 + . . scaffold334 TRF Tandem_Repeat 68857 68947 64 + . . scaffold334 TRF Tandem_Repeat 69416 69815 444 + . . scaffold334 TRF Tandem_Repeat 72460 72820 521 + . . scaffold334 TRF Tandem_Repeat 77054 77110 96 + . . scaffold334 TRF Tandem_Repeat 80284 80485 306 + . . scaffold334 GLEAN mRNA 81635 99131 0.991764 - . ID=CGI_10025910; scaffold334 TRF Tandem_Repeat 85414 85709 304 + . . scaffold334 TRF Tandem_Repeat 90311 90994 1019 + . . scaffold334 TRF Tandem_Repeat 91590 92053 490 + . . scaffold334 TRF Tandem_Repeat 92450 92704 251 + . . scaffold334 TRF Tandem_Repeat 93284 93308 50 + . . scaffold334 TRF Tandem_Repeat 95905 96102 308 + . . scaffold334 TRF Tandem_Repeat 96176 96643 467 + . . scaffold334 GLEAN promoter 99132 100131 0.991764 - . ID=CGI_10025910; scaffold334 GLEAN mRNA 104300 112166 0.460378 - . ID=CGI_10025911; scaffold334 WUBlastX DNA_hAT 104303 104737 113 - . . scaffold334 WUBlastX DNA_hAT 105478 105606 52 - . . scaffold334 WUBlastX DNA_hAT 105997 106095 43 - . . scaffold334 WUBlastX DNA_hAT 106504 106701 110 - . . scaffold334 WUBlastX DNA_hAT 107061 107180 48 - . . scaffold334 WUBlastX DNA_hAT 107528 107806 133 - . . scaffold334 WUBlastX DNA_hAT 107943 108047 40 - . . scaffold334 WUBlastX DNA_hAT 109000 109200 124 - . . scaffold334 TRF Tandem_Repeat 110383 110651 511 + . . scaffold334 GLEAN promoter 112096 113095 0.998718 + . ID=CGI_10025912; scaffold334 GLEAN promoter 112167 113166 0.460378 - . ID=CGI_10025911; scaffold334 GLEAN mRNA 113096 141269 0.998718 + . ID=CGI_10025912; scaffold334 TRF Tandem_Repeat 125332 125838 539 + . . scaffold334 GLEAN mRNA 141014 143375 0.423586 - . ID=CGI_10025913; scaffold334 GLEAN promoter 143376 144375 0.423586 - . ID=CGI_10025913; scaffold334 GLEAN mRNA 144356 145367 1 - . ID=CGI_10025914; scaffold334 GLEAN promoter 145368 146367 1 - . ID=CGI_10025914; scaffold334 GLEAN mRNA 145539 145700 0.749266 - . ID=CGI_10025915; scaffold334 GLEAN promoter 145701 146700 0.749266 - . ID=CGI_10025915; scaffold334 GLEAN mRNA 147456 148884 0.448993 - . ID=CGI_10025916; scaffold334 GLEAN promoter 148885 149884 0.448993 - . ID=CGI_10025916; scaffold334 TRF Tandem_Repeat 150853 151082 201 + . . scaffold334 TRF Tandem_Repeat 150880 151054 276 + . . scaffold334 TRF Tandem_Repeat 150890 151083 175 + . . scaffold334 TRF Tandem_Repeat 150895 151078 210 + . . scaffold334 GLEAN mRNA 152560 156857 0.593383 - . ID=CGI_10025917; scaffold334 GLEAN promoter 156858 157857 0.593383 - . ID=CGI_10025917; scaffold334 GLEAN promoter 160300 161299 0.995149 + . ID=CGI_10025918; scaffold334 GLEAN mRNA 161300 163093 0.995149 + . ID=CGI_10025918; scaffold334 TRF Tandem_Repeat 161348 161712 518 + . . scaffold334 TRF Tandem_Repeat 161348 161712 448 + . . scaffold334 TRF Tandem_Repeat 161825 161908 96 + . . scaffold334 WUBlastX LINE_RTE-X 165089 165493 39 - . . scaffold334 WUBlastX LINE_RTE-X 165595 165663 24 - . . scaffold334 GLEAN promoter 166241 167240 0.733817 + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 166436 166512 145 + . . scaffold334 GLEAN mRNA 167241 184630 0.733817 + . ID=CGI_10025919; scaffold334 TRF Tandem_Repeat 168960 169371 598 + . . scaffold334 TRF Tandem_Repeat 169070 169455 201 + . . scaffold334 TRF Tandem_Repeat 172342 172397 112 + . . scaffold334 TRF Tandem_Repeat 177695 178656 1336 + . . scaffold334 TRF Tandem_Repeat 179674 179798 101 + . . scaffold334 TRF Tandem_Repeat 179674 179816 103 + . . scaffold334 GLEAN promoter 184296 185295 0.996844 + . ID=CGI_10025920; scaffold334 GLEAN mRNA 185296 187221 0.996844 + . ID=CGI_10025920; scaffold334 GLEAN mRNA 190574 193617 0.777697 - . ID=CGI_10025921; scaffold334 GLEAN promoter 193618 194617 0.777697 - . ID=CGI_10025921; scaffold334 GLEAN mRNA 200976 210445 0.986269 - . ID=CGI_10025922; scaffold334 TRF Tandem_Repeat 204142 204493 337 + . . scaffold334 TRF Tandem_Repeat 204153 204326 177 + . . scaffold334 TRF Tandem_Repeat 204297 204524 181 + . . scaffold334 TRF Tandem_Repeat 207177 207229 106 + . . scaffold334 GLEAN promoter 210446 211445 0.986269 - . ID=CGI_10025922; scaffold334 GLEAN mRNA 210451 224362 0.63631 - . ID=CGI_10025923; scaffold334 TRF Tandem_Repeat 216274 217827 1697 + . . scaffold334 TRF Tandem_Repeat 218067 219102 1589 + . . scaffold334 GLEAN promoter 224268 225267 0.560951 + . ID=CGI_10025924; scaffold334 GLEAN promoter 224363 225362 0.63631 - . ID=CGI_10025923; scaffold334 GLEAN mRNA 225268 234574 0.560951 + . ID=CGI_10025924; scaffold334 TRF Tandem_Repeat 226726 226904 90 + . . scaffold334 TRF Tandem_Repeat 226745 226904 212 + . . scaffold334 GLEAN mRNA 226956 227120 0.618186 - . ID=CGI_10025925; scaffold334 GLEAN promoter 227121 228120 0.618186 - . ID=CGI_10025925; scaffold334 TRF Tandem_Repeat 237151 237400 419 + . . scaffold334 GLEAN mRNA 237506 266565 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 242313 242364 104 + . . scaffold334 TRF Tandem_Repeat 242369 242874 764 + . . scaffold334 TRF Tandem_Repeat 252801 252987 330 + . . scaffold334 TRF Tandem_Repeat 256496 256540 54 + . . scaffold334 TRF Tandem_Repeat 256496 256533 58 + . . scaffold334 TRF Tandem_Repeat 256580 256630 102 + . . scaffold334 TRF Tandem_Repeat 260270 261373 1049 + . . scaffold334 TRF Tandem_Repeat 260270 261373 1177 + . . scaffold334 TRF Tandem_Repeat 263288 263327 55 + . . scaffold334 GLEAN promoter 266566 267565 0.273559 - . ID=CGI_10025926; scaffold334 TRF Tandem_Repeat 267187 270642 3687 + . . scaffold334 TRF Tandem_Repeat 269334 270642 735 + . . scaffold334 TRF Tandem_Repeat 277118 277499 423 + . . scaffold334 TRF Tandem_Repeat 279459 279568 193 + . . scaffold334 GLEAN mRNA 281007 288767 0.903728 - . ID=CGI_10025927; scaffold334 TRF Tandem_Repeat 282812 282859 96 + . . scaffold334 GLEAN promoter 288768 289767 0.903728 - . ID=CGI_10025927; scaffold334 TRF Tandem_Repeat 288793 289087 572 + . . scaffold334 TRF Tandem_Repeat 288817 289015 77 + . . scaffold334 GLEAN promoter 295211 296210 0.700807 + . ID=CGI_10025928; scaffold334 GLEAN mRNA 296211 301797 0.700807 + . ID=CGI_10025928; scaffold334 TRF Tandem_Repeat 298636 298871 141 + . . scaffold334 TRF Tandem_Repeat 304015 304753 1066 + . . scaffold334 TRF Tandem_Repeat 304766 305172 600 + . . scaffold334 GLEAN promoter 312398 313397 0.619186 + . ID=CGI_10025929; scaffold334 GLEAN mRNA 313398 316250 0.619186 + . ID=CGI_10025929; scaffold334 GLEAN promoter 315484 316483 0.508125 + . ID=CGI_10025930; scaffold334 GLEAN mRNA 316484 320486 0.508125 + . ID=CGI_10025930; scaffold334 WUBlastX DNA_hAT 318798 319454 207 + . . scaffold334 WUBlastX DNA_hAT 319707 320102 32 + . . scaffold334 GLEAN promoter 322446 323445 0.945369 + . ID=CGI_10025931; scaffold334 GLEAN mRNA 323446 325161 0.945369 + . ID=CGI_10025931; scaffold334 WUBlastX DNA_hAT 323491 324822 401 + . . scaffold334 TRF Tandem_Repeat 327101 328021 1134 + . . scaffold334 TRF Tandem_Repeat 327101 327975 1228 + . . scaffold334 GLEAN promoter 329922 330921 0.649598 + . ID=CGI_10025932; scaffold334 TRF Tandem_Repeat 330169 330401 175 + . . scaffold334 TRF Tandem_Repeat 330169 331382 570 + . . scaffold334 TRF Tandem_Repeat 330402 331388 1258 + . . scaffold334 GLEAN mRNA 330922 331596 0.649598 + . ID=CGI_10025932; scaffold334 GLEAN promoter 332257 333256 0.999478 + . ID=CGI_10025933; scaffold334 GLEAN mRNA 333257 357250 0.999478 + . ID=CGI_10025933; scaffold334 TRF Tandem_Repeat 336202 336244 54 + . . scaffold334 TRF Tandem_Repeat 336410 337756 1576 + . . scaffold334 TRF Tandem_Repeat 336410 337729 1574 + . . scaffold334 WUBlastX LINE_RTE-X 343312 343848 96 + . . scaffold334 WUBlastX LINE_RTE-X 343414 343836 132 + . . scaffold334 TRF Tandem_Repeat 346212 346263 104 + . . scaffold334 TRF Tandem_Repeat 346264 346301 76 + . . scaffold334 TRF Tandem_Repeat 351239 351277 78 + . . scaffold334 TRF Tandem_Repeat 358012 358326 247 + . . scaffold334 TRF Tandem_Repeat 358145 358326 274 + . . scaffold334 GLEAN mRNA 359020 365394 1 - . ID=CGI_10025934; scaffold334 TRF Tandem_Repeat 359973 360020 80 + . . scaffold334 TRF Tandem_Repeat 361236 361333 151 + . . scaffold334 GLEAN promoter 365395 366394 1 - . ID=CGI_10025934; scaffold334 GLEAN promoter 366666 367665 1 + . ID=CGI_10025935; scaffold334 GLEAN mRNA 367666 372581 1 + . ID=CGI_10025935; scaffold334 GLEAN mRNA 374223 379842 0.999645 - . ID=CGI_10025936; scaffold334 TRF Tandem_Repeat 375713 375985 372 + . . scaffold334 GLEAN promoter 379843 380842 0.999645 - . ID=CGI_10025936; scaffold334 TRF Tandem_Repeat 379941 380283 476 + . . scaffold334 TRF Tandem_Repeat 409240 409912 612 + . . scaffold334 TRF Tandem_Repeat 409947 410097 135 + . . scaffold334 TRF Tandem_Repeat 409957 410135 186 + . . scaffold334 TRF Tandem_Repeat 409957 410109 172 + . . scaffold334 TRF Tandem_Repeat 417274 417661 251 + . . scaffold334 TRF Tandem_Repeat 417430 417924 594 + . . scaffold334 GLEAN mRNA 417514 432963 0.499832 - . ID=CGI_10025937; scaffold334 TRF Tandem_Repeat 417665 417924 443 + . . scaffold334 GLEAN promoter 421388 422387 1 + . ID=CGI_10025938; scaffold334 GLEAN mRNA 422388 434708 1 + . ID=CGI_10025938; scaffold334 TRF Tandem_Repeat 424974 425561 745 + . . scaffold334 TRF Tandem_Repeat 431814 432070 408 + . . scaffold334 GLEAN promoter 432964 433963 0.499832 - . ID=CGI_10025937; scaffold334 TRF Tandem_Repeat 435307 436216 1347 + . . scaffold334 TRF Tandem_Repeat 436579 436620 59 + . . scaffold334 TRF Tandem_Repeat 437269 437310 59 + . . scaffold334 TRF Tandem_Repeat 437483 438337 1369 + . . scaffold334 GLEAN mRNA 440139 465258 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 440375 440546 317 + . . scaffold334 TRF Tandem_Repeat 442244 442787 935 + . . scaffold334 TRF Tandem_Repeat 443517 443769 398 + . . scaffold334 TRF Tandem_Repeat 447603 447872 434 + . . scaffold334 TRF Tandem_Repeat 454132 455123 1140 + . . scaffold334 TRF Tandem_Repeat 454132 456071 1405 + . . scaffold334 TRF Tandem_Repeat 455130 455445 355 + . . scaffold334 TRF Tandem_Repeat 455443 456071 650 + . . scaffold334 TRF Tandem_Repeat 455443 456071 683 + . . scaffold334 TRF Tandem_Repeat 459039 459620 317 + . . scaffold334 TRF Tandem_Repeat 462665 462935 492 + . . scaffold334 TRF Tandem_Repeat 462697 463615 608 + . . scaffold334 TRF Tandem_Repeat 462831 463615 715 + . . scaffold334 TRF Tandem_Repeat 462896 463615 675 + . . scaffold334 GLEAN promoter 465259 466258 0.557395 - . ID=CGI_10025939; scaffold334 TRF Tandem_Repeat 465974 466361 178 + . . scaffold334 TRF Tandem_Repeat 465974 466128 165 + . . scaffold334 TRF Tandem_Repeat 466247 466432 137 + . . scaffold334 TRF Tandem_Repeat 466247 466384 147 + . . scaffold334 TRF Tandem_Repeat 468883 469095 228 + . . scaffold334 GLEAN promoter 472016 473015 0.747309 + . ID=CGI_10025940; scaffold334 GLEAN mRNA 473016 487387 0.747309 + . ID=CGI_10025940; scaffold334 TRF Tandem_Repeat 477595 477766 326 + . . scaffold334 TRF Tandem_Repeat 478456 478945 445 + . . scaffold334 TRF Tandem_Repeat 478456 478945 337 + . . scaffold334 TRF Tandem_Repeat 478456 478945 474 + . . scaffold334 TRF Tandem_Repeat 481951 482002 63 + . . scaffold334 TRF Tandem_Repeat 482061 483477 557 + . . scaffold334 TRF Tandem_Repeat 482064 483568 1414 + . . scaffold334 TRF Tandem_Repeat 482073 483535 863 + . . scaffold334 GLEAN promoter 486748 487747 0.947191 + . ID=CGI_10025941; scaffold334 GLEAN mRNA 487748 494985 0.947191 + . ID=CGI_10025941; scaffold334 GLEAN mRNA 493742 500105 0.99959 - . ID=CGI_10025942; scaffold334 GLEAN promoter 500106 501105 0.99959 - . ID=CGI_10025942; scaffold334 GLEAN promoter 501315 502314 0.946884 + . ID=CGI_10025943; scaffold334 GLEAN mRNA 502315 506735 0.946884 + . ID=CGI_10025943; scaffold334 TRF Tandem_Repeat 502880 503792 1092 + . . scaffold334 GLEAN mRNA 508017 510678 0.999415 - . ID=CGI_10025944; scaffold334 GLEAN promoter 510679 511678 0.999415 - . ID=CGI_10025944; scaffold334 GLEAN promoter 511087 512086 0.734695 + . ID=CGI_10025945; scaffold334 GLEAN mRNA 512087 532591 0.734695 + . ID=CGI_10025945; scaffold334 TRF Tandem_Repeat 519849 520044 247 + . . scaffold334 TRF Tandem_Repeat 522187 522946 1216 + . . scaffold334 TRF Tandem_Repeat 527798 528082 137 + . . scaffold334 TRF Tandem_Repeat 530246 531516 1982 + . . scaffold334 TRF Tandem_Repeat 530246 531516 2018 + . . scaffold334 GLEAN promoter 531901 532900 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 532637 532841 301 + . . scaffold334 GLEAN mRNA 532901 556493 0.471287 + . ID=CGI_10025946; scaffold334 TRF Tandem_Repeat 533430 535162 2619 + . . scaffold334 TRF Tandem_Repeat 537007 537562 1031 + . . scaffold334 TRF Tandem_Repeat 539024 539222 289 + . . scaffold334 TRF Tandem_Repeat 548187 548652 491 + . . scaffold334 TRF Tandem_Repeat 548187 548652 575 + . . scaffold334 TRF Tandem_Repeat 552821 552857 74 + . . scaffold334 TRF Tandem_Repeat 552951 554038 890 + . . scaffold334 TRF Tandem_Repeat 552951 554038 463 + . . scaffold334 TRF Tandem_Repeat 553221 554038 936 + . . scaffold334 GLEAN mRNA 553283 553855 1 - . ID=CGI_10025947; scaffold334 GLEAN promoter 553856 554855 1 - . ID=CGI_10025947; scaffold334 GLEAN mRNA 559742 566051 0.999676 - . ID=CGI_10025948; scaffold334 GLEAN promoter 566052 567051 0.999676 - . ID=CGI_10025948; scaffold334 GLEAN mRNA 566407 576240 1 - . ID=CGI_10025949; scaffold334 TRF Tandem_Repeat 568795 569278 887 + . . scaffold334 TRF Tandem_Repeat 568795 569709 1532 + . . scaffold334 TRF Tandem_Repeat 568795 569709 1541 + . . scaffold334 TRF Tandem_Repeat 569275 569709 780 + . . scaffold334 TRF Tandem_Repeat 569540 569681 97 + . . scaffold334 TRF Tandem_Repeat 569566 569707 76 + . . scaffold334 TRF Tandem_Repeat 573124 573653 445 + . . scaffold334 GLEAN promoter 575361 576360 0.999233 + . ID=CGI_10025950; scaffold334 GLEAN promoter 576241 577240 1 - . ID=CGI_10025949; scaffold334 GLEAN mRNA 576361 579045 0.999233 + . ID=CGI_10025950; scaffold334 TRF Tandem_Repeat 584313 584362 100 + . . scaffold334 TRF Tandem_Repeat 584491 584516 52 + . . scaffold334 GLEAN mRNA 586481 586832 0.999929 - . ID=CGI_10025951; scaffold334 GLEAN promoter 586833 587832 0.999929 - . ID=CGI_10025951; scaffold334 GLEAN promoter 587784 588783 1 + . ID=CGI_10025952; scaffold334 GLEAN mRNA 588784 590291 1 + . ID=CGI_10025952; scaffold334 TRF Tandem_Repeat 593993 594071 140 + . . scaffold334 TRF Tandem_Repeat 595942 596019 74 + . . scaffold334 TRF Tandem_Repeat 595960 596019 59 + . . scaffold334 WUBlastX LTR_Gypsy 596025 596753 148 - . . scaffold334 WUBlastX LTR_Gypsy 596199 597104 122 - . . scaffold334 WUBlastX LTR_Gypsy 597197 597286 28 - . . scaffold334 TRF Tandem_Repeat 599446 599480 61 + . . scaffold334 TRF Tandem_Repeat 599622 599887 235 + . . scaffold334 WUBlastX LINE_L1-Tx1 601692 602027 53 + . . scaffold334 WUBlastX LINE_L1-Tx1 601809 602027 69 + . . scaffold334 WUBlastX LINE_L1-Tx1 601818 601997 82 + . . scaffold334 WUBlastX LINE_L1 602054 602218 29 + . . scaffold334 WUBlastX LINE_L1 602128 602592 155 + . . scaffold334 WUBlastX LINE_L1-Tx1 602224 603243 304 + . . scaffold334 WUBlastX LINE_L1-Tx1 602971 603504 42 + . . scaffold334 WUBlastX LINE_L1 602983 603312 125 + . . scaffold334 WUBlastX LINE_L1-Tx1 605217 605393 64 + . . scaffold334 WUBlastX LINE_L1-Tx1 605256 605441 76 + . . scaffold334 GLEAN mRNA 614687 617594 0.944529 - . ID=CGI_10025953; scaffold334 GLEAN promoter 617595 618594 0.944529 - . ID=CGI_10025953; scaffold334 GLEAN promoter 618645 619644 1 + . ID=CGI_10025954; scaffold334 GLEAN mRNA 619645 624670 1 + . ID=CGI_10025954; scaffold334 TRF Tandem_Repeat 623048 623274 375 + . . scaffold334 GLEAN mRNA 627021 650676 0.999676 - . ID=CGI_10025955; scaffold334 TRF Tandem_Repeat 631593 631630 51 + . . scaffold334 TRF Tandem_Repeat 635773 635815 86 + . . scaffold334 TRF Tandem_Repeat 639599 640004 614 + . . scaffold334 TRF Tandem_Repeat 639822 640944 641 + . . scaffold334 TRF Tandem_Repeat 639968 640157 133 + . . scaffold334 TRF Tandem_Repeat 640040 640358 523 + . . scaffold334 TRF Tandem_Repeat 640246 640435 124 + . . scaffold334 TRF Tandem_Repeat 640271 641017 403 + . . scaffold334 TRF Tandem_Repeat 644477 644515 60 + . . scaffold334 TRF Tandem_Repeat 646134 646263 93 + . . scaffold334 TRF Tandem_Repeat 646179 646325 73 + . . scaffold334 TRF Tandem_Repeat 647673 647710 60 + . . scaffold334 GLEAN promoter 650080 651079 0.999949 + . ID=CGI_10025956; scaffold334 GLEAN promoter 650677 651676 0.999676 - . ID=CGI_10025955; scaffold334 GLEAN mRNA 651080 665858 0.999949 + . ID=CGI_10025956; scaffold334 TRF Tandem_Repeat 652896 652936 75 + . . scaffold334 TRF Tandem_Repeat 653788 654229 473 + . . scaffold334 TRF Tandem_Repeat 653788 654398 470 + . . scaffold334 TRF Tandem_Repeat 653788 654229 486 + . . scaffold334 TRF Tandem_Repeat 654231 654398 228 + . . scaffold334 TRF Tandem_Repeat 656582 657221 863 + . . scaffold334 GLEAN mRNA 671679 679450 0.66854 - . ID=CGI_10025957; scaffold334 TRF Tandem_Repeat 673042 673310 475 + . . scaffold334 GLEAN promoter 679203 680202 1 + . ID=CGI_10025958; scaffold334 GLEAN promoter 679451 680450 0.66854 - . ID=CGI_10025957; scaffold334 GLEAN mRNA 680203 687962 1 + . ID=CGI_10025958; scaffold334 WUBlastX DNA_TcMar-Tc1 694012 694581 80 - . . scaffold334 WUBlastX DNA_TcMar-Tc1 694012 694311 176 - . . scaffold334 WUBlastX DNA_TcMar-Tc1 694852 695022 25 - . . scaffold334 WUBlastX DNA_TcMar-Tc1 694879 695112 21 - . . scaffold334 WUBlastX DNA_TcMar-Tc1 694879 695016 34 - . . scaffold334 TRF Tandem_Repeat 696924 696962 60 + . . scaffold334 TRF Tandem_Repeat 698421 698459 78 + . . scaffold334 GLEAN promoter 703630 704629 0.616168 + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 704347 704399 106 + . . scaffold334 TRF Tandem_Repeat 704455 704482 56 + . . scaffold334 GLEAN mRNA 704564 710933 0.999675 - . ID=CGI_10025959; scaffold334 GLEAN mRNA 704630 717663 0.616168 + . ID=CGI_10025960; scaffold334 TRF Tandem_Repeat 705397 706060 468 + . . scaffold334 WUBlastX DNA_Harbinger 707481 707621 69 + . . scaffold334 WUBlastX DNA_Harbinger 707900 708046 36 + . . scaffold334 TRF Tandem_Repeat 708162 708282 188 + . . scaffold334 TRF Tandem_Repeat 710522 710611 67 + . . scaffold334 TRF Tandem_Repeat 710536 710611 91 + . . scaffold334 GLEAN promoter 710934 711933 0.999675 - . ID=CGI_10025959; scaffold334 TRF Tandem_Repeat 714922 714956 52 + . . scaffold334 TRF Tandem_Repeat 716034 716100 71 + . . scaffold334 WUBlastX LINE_RTE-X 718658 719914 391 - . . scaffold334 WUBlastX LINE_RTE-X 719905 720717 357 - . . scaffold334 WUBlastX LINE_L1 719962 720900 32 - . . scaffold334 WUBlastX LINE_CR1-L2 721426 721587 26 - . . scaffold334 TRF Tandem_Repeat 721821 721852 55 + . . scaffold334 TRF Tandem_Repeat 723268 723391 169 + . . scaffold334 WUBlastX DNA_Harbinger 724331 724606 187 - . . scaffold334 WUBlastX DNA_Harbinger 724815 724892 40 - . . scaffold334 WUBlastX DNA_Harbinger 724864 725190 168 - . . scaffold334 WUBlastX DNA_Harbinger 724864 725403 142 - . . scaffold334 WUBlastX LINE_RTE-X 725584 725922 96 - . . scaffold334 WUBlastX LINE_RTE-X 725713 725931 105 - . . scaffold334 TRF Tandem_Repeat 737495 737544 84 + . . scaffold334 TRF Tandem_Repeat 737927 737969 86 + . . scaffold334 GLEAN mRNA 747173 764883 0.999025 - . ID=CGI_10025961; scaffold334 TRF Tandem_Repeat 749920 751443 2264 + . . scaffold334 TRF Tandem_Repeat 749920 751443 2262 + . . scaffold334 GLEAN promoter 764884 765883 0.999025 - . ID=CGI_10025961; scaffold334 TRF Tandem_Repeat 767484 767529 92 + . . scaffold334 GLEAN mRNA 767755 789598 0.645847 - . ID=CGI_10025962; scaffold334 TRF Tandem_Repeat 773298 773391 107 + . . scaffold334 TRF Tandem_Repeat 773470 773608 149 + . . scaffold334 TRF Tandem_Repeat 773660 773824 179 + . . scaffold334 TRF Tandem_Repeat 773896 773987 105 + . . scaffold334 TRF Tandem_Repeat 777648 778211 756 + . . scaffold334 WUBlastX LTR_Ngaro 787946 788860 404 - . . scaffold334 WUBlastX LTR_Ngaro 788851 789570 521 - . . scaffold334 WUBlastX LTR_Ngaro 789572 790372 520 - . . scaffold334 GLEAN promoter 789599 790598 0.645847 - . ID=CGI_10025962; scaffold334 WUBlastX LTR_Ngaro 790348 790434 29 - . . scaffold334 WUBlastX LTR_Ngaro 790666 791163 67 - . . scaffold334 WUBlastX LTR_Ngaro 790672 791043 75 - . . scaffold334 TRF Tandem_Repeat 811156 811204 53 + . . scaffold334 TRF Tandem_Repeat 811599 811644 92 + . . scaffold334 WUBlastX LINE_RTE-X 813701 813940 63 - . . scaffold334 WUBlastX LINE_CR1 813864 814094 61 - . . scaffold334 WUBlastX LTR_Gypsy-Troyk 817889 818542 110 - . . scaffold334 WUBlastX LTR_Gypsy-Troyk 818393 818671 29 - . . scaffold334 GLEAN mRNA 818405 818653 0.645784 - . ID=CGI_10025963; scaffold334 GLEAN promoter 818654 819653 0.645784 - . ID=CGI_10025963; scaffold334 WUBlastX LTR_Gypsy 819862 820143 62 - . . scaffold334 WUBlastX LINE_RTE-BovB 820161 820373 122 - . . scaffold334 TRF Tandem_Repeat 824269 825676 1597 + . . scaffold334 TRF Tandem_Repeat 824269 825674 1531 + . . scaffold334 TRF Tandem_Repeat 828821 828865 90 + . . scaffold334 TRF Tandem_Repeat 833675 833720 53 + . . scaffold334 WUBlastX LINE_RTE-X 857974 858396 126 - . . scaffold334 GLEAN mRNA 861978 869539 0.864897 - . ID=CGI_10025964; scaffold334 TRF Tandem_Repeat 864768 864835 127 + . . scaffold334 TRF Tandem_Repeat 869105 869265 313 + . . scaffold334 GLEAN promoter 869540 870539 0.864897 - . ID=CGI_10025964; scaffold334 TRF Tandem_Repeat 869979 870020 84 + . . scaffold334 TRF Tandem_Repeat 881130 881213 168 + . . scaffold334 TRF Tandem_Repeat 881215 881240 52 + . . scaffold334 GLEAN mRNA 882447 905381 0.484678 - . ID=CGI_10025965; scaffold334 TRF Tandem_Repeat 884511 884538 56 + . . scaffold334 TRF Tandem_Repeat 894679 894734 112 + . . scaffold334 TRF Tandem_Repeat 902886 902958 125 + . . scaffold334 GLEAN promoter 905382 906381 0.484678 - . ID=CGI_10025965; scaffold334 GLEAN mRNA 912063 915829 0.769715 - . ID=CGI_10025966; scaffold334 GLEAN promoter 915830 916829 0.769715 - . ID=CGI_10025966; scaffold334 GLEAN mRNA 917288 920135 0.912587 - . ID=CGI_10025967; scaffold334 GLEAN promoter 920136 921135 0.912587 - . ID=CGI_10025967; scaffold334 WUBlastX DNA_TcMar-Marin 922186 922380 32 + . . scaffold334 WUBlastX DNA_TcMar-Marin 922225 922380 38 + . . scaffold334 WUBlastX DNA_TcMar-Marin 922249 922380 61 + . . scaffold334 GLEAN promoter 945800 946799 1 + . ID=CGI_10025968; scaffold334 GLEAN mRNA 946800 947201 1 + . ID=CGI_10025968; scaffold334 TRF Tandem_Repeat 947861 948665 1082 + . . scaffold334 TRF Tandem_Repeat 952694 952732 51 + . . scaffold334 GLEAN promoter 953157 954156 0.999348 + . ID=CGI_10025969; scaffold334 GLEAN mRNA 954157 960912 0.999348 + . ID=CGI_10025969; scaffold334 TRF Tandem_Repeat 963465 963600 114 + . . scaffold334 TRF Tandem_Repeat 963523 963610 97 + . . scaffold334 TRF Tandem_Repeat 963694 963803 105 + . . scaffold334 TRF Tandem_Repeat 964699 964764 114 + . . scaffold334 TRF Tandem_Repeat 973985 974097 210 + . . scaffold334 GLEAN mRNA 983332 990795 0.650011 - . ID=CGI_10025970; scaffold334 GLEAN promoter 990796 991795 0.650011 - . ID=CGI_10025970; scaffold334 TRF Tandem_Repeat 992702 992763 124 + . . scaffold334 TRF Tandem_Repeat 998933 999041 128 + . . scaffold334 TRF Tandem_Repeat 998933 999041 110 + . . scaffold334 TRF Tandem_Repeat 998943 999036 125 + . . scaffold334 TRF Tandem_Repeat 999050 999846 1319 + . . scaffold334 WUBlastX DNA_En-Spm 1026067 1026111 24 + . . scaffold334 WUBlastX DNA_En-Spm 1026087 1026383 100 + . . scaffold334 WUBlastX DNA_En-Spm 1026416 1026634 61 + . . scaffold334 WUBlastX DNA_En-Spm 1026649 1027077 41 + . . scaffold334 WUBlastX DNA_En-Spm 1026667 1027026 74 + . . scaffold334 TRF Tandem_Repeat 1030824 1030876 99 + . . scaffold334 GLEAN mRNA 1033963 1069994 0.961302 - . ID=CGI_10025971; scaffold334 TRF Tandem_Repeat 1034627 1034660 52 + . . scaffold334 TRF Tandem_Repeat 1035407 1035470 50 + . . scaffold334 TRF Tandem_Repeat 1037133 1037194 63 + . . scaffold334 TRF Tandem_Repeat 1037140 1037191 59 + . . scaffold334 WUBlastX LINE_L1-Tx1 1046073 1046276 28 + . . scaffold334 WUBlastX LINE_L1-Tx1 1046142 1046270 41 + . . scaffold334 WUBlastX LINE_L1-Tx1 1046169 1046279 65 + . . scaffold334 WUBlastX LINE_L1-Tx1 1046272 1047297 166 + . . scaffold334 WUBlastX LINE_L1-Tx1 1046546 1048225 332 + . . scaffold334 WUBlastX LINE_L1 1048227 1048457 58 + . . scaffold334 WUBlastX LINE_L1-Tx1 1048230 1048769 44 + . . scaffold334 WUBlastX LINE_L1-Tx1 1049133 1049228 25 + . . scaffold334 TRF Tandem_Repeat 1060047 1060866 959 + . . scaffold334 TRF Tandem_Repeat 1061041 1061086 56 + . . scaffold334 TRF Tandem_Repeat 1061404 1062400 1341 + . . scaffold334 TRF Tandem_Repeat 1065891 1066289 465 + . . scaffold334 TRF Tandem_Repeat 1066887 1067331 550 + . . scaffold334 TRF Tandem_Repeat 1067554 1067810 266 + . . scaffold334 TRF Tandem_Repeat 1067803 1067985 312 + . . scaffold334 GLEAN promoter 1069995 1070994 0.961302 - . ID=CGI_10025971; scaffold334 GLEAN mRNA 1070439 1070714 0.59015 - . ID=CGI_10025972; scaffold334 GLEAN promoter 1070715 1071714 0.59015 - . ID=CGI_10025972; scaffold334 TRF Tandem_Repeat 1075454 1075580 159 + . . scaffold334 TRF Tandem_Repeat 1087111 1087177 62 + . . scaffold334 TRF Tandem_Repeat 1087300 1087581 258 + . . scaffold334 TRF Tandem_Repeat 1109750 1109786 74 + . . scaffold33412 WUBlastX LINE_Proto2 6090 6182 28 + . . scaffold33412 WUBlastX LINE_L1 6520 6645 27 + . . scaffold33412 WUBlastX LINE_L2 6723 6938 54 + . . scaffold33412 WUBlastX LINE_Jockey 6804 6944 58 + . . scaffold33412 WUBlastX LINE_L2 6822 7025 51 + . . scaffold33412 WUBlastX LINE_RTE-X 7019 7264 60 + . . scaffold33412 WUBlastX LINE_CR1-L2 7049 7309 30 + . . scaffold33412 TRF Tandem_Repeat 11855 12001 222 + . . scaffold33412 TRF Tandem_Repeat 12393 12442 57 + . . scaffold33424 GLEAN mRNA 967 8892 0.937847 - . ID=CGI_10001066; scaffold33424 GLEAN promoter 8893 9892 0.937847 - . ID=CGI_10001066; scaffold33428 GLEAN mRNA 8580 9092 0.776637 - . ID=CGI_10001061; scaffold33428 GLEAN promoter 9093 10092 0.776637 - . ID=CGI_10001061; scaffold33432 GLEAN promoter 2151 3150 0.999612 + . ID=CGI_10001067; scaffold33432 GLEAN mRNA 3151 11340 0.999612 + . ID=CGI_10001067; scaffold33454 GLEAN promoter 642 1641 1 + . ID=CGI_10001026; scaffold33454 GLEAN mRNA 1642 5476 1 + . ID=CGI_10001026; scaffold33454 GLEAN promoter 5858 6857 0.965804 + . ID=CGI_10001027; scaffold33454 GLEAN mRNA 6858 13550 0.965804 + . ID=CGI_10001027; scaffold33462 GLEAN promoter 1061 2060 0.999949 + . ID=CGI_10001068; scaffold33462 WUBlastX DNA_hAT-Tip100 1750 1878 82 - . . scaffold33462 GLEAN mRNA 2061 14137 0.999949 + . ID=CGI_10001068; scaffold33462 TRF Tandem_Repeat 7182 7217 63 + . . scaffold33462 TRF Tandem_Repeat 14298 14323 52 + . . scaffold33466 GLEAN mRNA 1922 13916 0.999896 - . ID=CGI_10001069; scaffold33466 WUBlastX LINE_CR1 7326 7511 28 + . . scaffold33466 GLEAN promoter 13917 14348 0.999896 - . ID=CGI_10001069; scaffold33486 WUBlastX LINE_L1-Tx1 1043 1192 32 + . . scaffold33486 WUBlastX LINE_L1-Tx1 1118 1219 20 + . . scaffold33486 WUBlastX LINE_L1-Tx1 1212 1460 36 + . . scaffold33486 GLEAN promoter 7348 8347 0.999676 + . ID=CGI_10001062; scaffold33486 GLEAN mRNA 8348 14057 0.999676 + . ID=CGI_10001062; scaffold33498 GLEAN promoter 233 1232 0.999351 + . ID=CGI_10001075; scaffold33498 GLEAN mRNA 1233 4643 0.999351 + . ID=CGI_10001075; scaffold33498 GLEAN mRNA 5546 10451 0.838434 - . ID=CGI_10001076; scaffold33498 GLEAN promoter 10452 11451 0.838434 - . ID=CGI_10001076; scaffold33498 GLEAN mRNA 12723 13580 0.48083 - . ID=CGI_10001077; scaffold33498 GLEAN promoter 13581 14479 0.48083 - . ID=CGI_10001077; scaffold335 WUBlastX LINE_RTE-X 2581 2808 46 - . . scaffold335 WUBlastX LINE_RTE-X 2632 2811 63 - . . scaffold335 TRF Tandem_Repeat 9338 10234 1149 + . . scaffold335 GLEAN mRNA 13309 16533 0.999676 - . ID=CGI_10017081; scaffold335 GLEAN promoter 16534 17533 0.999676 - . ID=CGI_10017081; scaffold335 GLEAN mRNA 19367 29766 0.651134 - . ID=CGI_10017082; scaffold335 TRF Tandem_Repeat 22194 22237 88 + . . scaffold335 GLEAN promoter 29767 30766 0.651134 - . ID=CGI_10017082; scaffold335 TRF Tandem_Repeat 30874 30924 93 + . . scaffold335 TRF Tandem_Repeat 33328 33369 75 + . . scaffold335 GLEAN mRNA 36330 53474 0.791399 - . ID=CGI_10017083; scaffold335 TRF Tandem_Repeat 36628 38012 1887 + . . scaffold335 WUBlastX LTR_DIRS 51229 51369 46 - . . scaffold335 WUBlastX LTR_DIRS 51363 52499 293 - . . scaffold335 WUBlastX LTR_DIRS 52257 52562 154 - . . scaffold335 GLEAN promoter 53475 54474 0.791399 - . ID=CGI_10017083; scaffold335 GLEAN promoter 55499 56498 0.475758 + . ID=CGI_10017084; scaffold335 GLEAN mRNA 56499 76156 0.475758 + . ID=CGI_10017084; scaffold335 TRF Tandem_Repeat 64287 64345 118 + . . scaffold335 GLEAN mRNA 65859 82701 0.764147 - . ID=CGI_10017085; scaffold335 TRF Tandem_Repeat 74727 74929 270 + . . scaffold335 TRF Tandem_Repeat 76236 76277 84 + . . scaffold335 TRF Tandem_Repeat 77733 77759 54 + . . scaffold335 TRF Tandem_Repeat 78748 78830 159 + . . scaffold335 GLEAN promoter 82702 83701 0.764147 - . ID=CGI_10017085; scaffold335 GLEAN mRNA 82947 83354 0.749266 - . ID=CGI_10017086; scaffold335 GLEAN promoter 83355 84354 0.749266 - . ID=CGI_10017086; scaffold335 TRF Tandem_Repeat 83361 83528 167 + . . scaffold335 GLEAN mRNA 85216 94267 0.999317 - . ID=CGI_10017087; scaffold335 TRF Tandem_Repeat 86015 86182 167 + . . scaffold335 GLEAN promoter 94268 95267 0.999317 - . ID=CGI_10017087; scaffold335 GLEAN promoter 94342 95341 1 + . ID=CGI_10017088; scaffold335 GLEAN mRNA 95342 96446 1 + . ID=CGI_10017088; scaffold335 GLEAN mRNA 99052 100384 1 - . ID=CGI_10017089; scaffold335 GLEAN promoter 100385 101384 1 - . ID=CGI_10017089; scaffold335 GLEAN mRNA 102896 113181 0.999675 - . ID=CGI_10017090; scaffold335 TRF Tandem_Repeat 107434 107663 83 + . . scaffold335 GLEAN promoter 113182 114181 0.999675 - . ID=CGI_10017090; scaffold335 GLEAN promoter 117727 118726 1 + . ID=CGI_10017091; scaffold335 GLEAN mRNA 118727 119173 1 + . ID=CGI_10017091; scaffold335 WUBlastX LTR_Copia 123752 123874 21 - . . scaffold335 WUBlastX LTR_Gypsy 124388 125110 264 - . . scaffold335 WUBlastX LTR_Gypsy 124655 125110 310 - . . scaffold335 WUBlastX LTR_Gypsy 125091 127112 1790 - . . scaffold335 WUBlastX LTR_Gypsy 127106 127399 146 - . . scaffold335 WUBlastX LTR_Caulimoviru 127297 127530 29 - . . scaffold335 WUBlastX LTR_Gypsy 127446 127787 51 - . . scaffold335 WUBlastX LTR_Gypsy 127545 127808 111 - . . scaffold335 WUBlastX LTR_Gypsy 127763 127897 82 - . . scaffold335 WUBlastX LTR_Gypsy 127781 127990 45 - . . scaffold335 WUBlastX LTR_Gypsy 128707 132669 2991 - . . scaffold335 TRF Tandem_Repeat 164857 166425 1575 + . . scaffold335 TRF Tandem_Repeat 165721 165784 55 + . . scaffold335 TRF Tandem_Repeat 166349 166412 57 + . . scaffold335 TRF Tandem_Repeat 168387 169083 1055 + . . scaffold335 GLEAN mRNA 169942 179936 0.289702 - . ID=CGI_10017092; scaffold335 TRF Tandem_Repeat 170726 170751 52 + . . scaffold335 TRF Tandem_Repeat 176402 176609 407 + . . scaffold335 TRF Tandem_Repeat 177047 177316 540 + . . scaffold335 GLEAN promoter 179201 180200 1 + . ID=CGI_10017093; scaffold335 GLEAN promoter 179937 180936 0.289702 - . ID=CGI_10017092; scaffold335 GLEAN mRNA 180201 184405 1 + . ID=CGI_10017093; scaffold335 GLEAN mRNA 185254 208421 0.566602 - . ID=CGI_10017094; scaffold335 TRF Tandem_Repeat 193278 193324 94 + . . scaffold335 TRF Tandem_Repeat 195262 195380 93 + . . scaffold335 GLEAN promoter 208422 209421 0.566602 - . ID=CGI_10017094; scaffold335 GLEAN mRNA 213655 223872 0.980224 - . ID=CGI_10017095; scaffold335 GLEAN promoter 223873 224872 0.980224 - . ID=CGI_10017095; scaffold335 GLEAN promoter 224769 225768 0.757305 + . ID=CGI_10017096; scaffold335 GLEAN mRNA 225769 228146 0.757305 + . ID=CGI_10017096; scaffold335 GLEAN mRNA 229572 233479 1 - . ID=CGI_10017097; scaffold335 GLEAN promoter 232887 233886 1 + . ID=CGI_10017098; scaffold335 GLEAN promoter 233480 234479 1 - . ID=CGI_10017097; scaffold335 GLEAN mRNA 233887 239147 1 + . ID=CGI_10017098; scaffold335 TRF Tandem_Repeat 237778 237825 60 + . . scaffold335 GLEAN mRNA 242453 274121 0.999354 - . ID=CGI_10017099; scaffold335 TRF Tandem_Repeat 254532 254715 151 + . . scaffold335 TRF Tandem_Repeat 264779 264913 200 + . . scaffold335 TRF Tandem_Repeat 271399 271447 98 + . . scaffold335 GLEAN promoter 274122 275121 0.999354 - . ID=CGI_10017099; scaffold335 TRF Tandem_Repeat 274716 274805 126 + . . scaffold335 GLEAN mRNA 277446 280828 0.774414 - . ID=CGI_10017100; scaffold335 GLEAN promoter 280829 281828 0.774414 - . ID=CGI_10017100; scaffold335 WUBlastX LTR_Pao 281085 281288 110 - . . scaffold335 WUBlastX LTR_Pao 281163 281288 170 - . . scaffold335 WUBlastX LTR_Pao 281549 281605 55 - . . scaffold335 WUBlastX LTR_Pao 282153 282203 46 - . . scaffold335 GLEAN promoter 285615 286614 1 + . ID=CGI_10017101; scaffold335 GLEAN mRNA 286615 300153 1 + . ID=CGI_10017101; scaffold335 TRF Tandem_Repeat 287436 287505 96 + . . scaffold335 TRF Tandem_Repeat 287437 287502 71 + . . scaffold335 TRF Tandem_Repeat 292310 293059 1021 + . . scaffold335 GLEAN mRNA 302893 308641 1 - . ID=CGI_10017102; scaffold335 TRF Tandem_Repeat 307292 307596 271 + . . scaffold335 GLEAN promoter 308642 309641 1 - . ID=CGI_10017102; scaffold335 TRF Tandem_Repeat 312290 312348 109 + . . scaffold335 TRF Tandem_Repeat 313545 313624 92 + . . scaffold335 TRF Tandem_Repeat 313581 313672 71 + . . scaffold335 GLEAN promoter 323490 324489 0.187812 + . ID=CGI_10017103; scaffold335 GLEAN mRNA 324490 337606 0.187812 + . ID=CGI_10017103; scaffold335 TRF Tandem_Repeat 328483 328770 305 + . . scaffold335 TRF Tandem_Repeat 331807 332072 171 + . . scaffold335 TRF Tandem_Repeat 332108 332490 650 + . . scaffold335 TRF Tandem_Repeat 332108 332490 653 + . . scaffold335 TRF Tandem_Repeat 332108 332490 650 + . . scaffold335 TRF Tandem_Repeat 337577 338217 813 + . . scaffold335 TRF Tandem_Repeat 342594 342792 308 + . . scaffold335 TRF Tandem_Repeat 342594 342783 146 + . . scaffold335 TRF Tandem_Repeat 343416 343706 314 + . . scaffold335 TRF Tandem_Repeat 343416 343706 314 + . . scaffold335 GLEAN mRNA 356931 357830 1 - . ID=CGI_10017104; scaffold335 GLEAN promoter 357831 358830 1 - . ID=CGI_10017104; scaffold335 TRF Tandem_Repeat 357943 357997 110 + . . scaffold335 TRF Tandem_Repeat 365781 365822 68 + . . scaffold335 TRF Tandem_Repeat 365782 365819 51 + . . scaffold335 TRF Tandem_Repeat 367589 368667 1400 + . . scaffold335 TRF Tandem_Repeat 369203 369997 1259 + . . scaffold335 TRF Tandem_Repeat 379854 380539 1203 + . . scaffold335 GLEAN mRNA 381520 394130 0.458743 - . ID=CGI_10017105; scaffold335 TRF Tandem_Repeat 382767 382826 77 + . . scaffold335 WUBlastX LINE_L1-Tx1 382938 384443 347 - . . scaffold335 WUBlastX LINE_L1-Tx1 383982 384590 75 - . . scaffold335 WUBlastX LINE_L1 385063 385233 25 - . . scaffold335 GLEAN promoter 394131 395130 0.458743 - . ID=CGI_10017105; scaffold335 WUBlastX LINE_CR1 399172 399792 147 + . . scaffold335 WUBlastX LINE_CR1 399836 400168 55 + . . scaffold335 WUBlastX LINE_CR1 399906 400058 70 + . . scaffold335 WUBlastX LINE_CR1 400177 400401 26 + . . scaffold335 WUBlastX LINE_CR1 400198 400386 40 + . . scaffold335 WUBlastX LINE_CR1 402910 403566 212 + . . scaffold335 WUBlastX LINE_CR1 403045 403572 295 + . . scaffold335 WUBlastX LINE_CR1 403551 404165 431 + . . scaffold335 WUBlastX LINE_CR1 404135 404395 97 + . . scaffold335 WUBlastX LINE_CR1 404153 404551 29 + . . scaffold335 TRF Tandem_Repeat 405663 405710 96 + . . scaffold335 GLEAN mRNA 416373 416786 0.776794 - . ID=CGI_10017106; scaffold335 GLEAN promoter 416787 417786 0.776794 - . ID=CGI_10017106; scaffold335 GLEAN mRNA 419132 419655 0.889891 - . ID=CGI_10017107; scaffold335 GLEAN promoter 419656 420655 0.889891 - . ID=CGI_10017107; scaffold335 TRF Tandem_Repeat 421626 421651 52 + . . scaffold335 GLEAN promoter 425827 426826 1 + . ID=CGI_10017108; scaffold335 GLEAN mRNA 426827 434746 1 + . ID=CGI_10017108; scaffold335 TRF Tandem_Repeat 427450 427492 86 + . . scaffold335 TRF Tandem_Repeat 433372 433433 124 + . . scaffold335 WUBlastX DNA_Crypton 441204 441374 63 - . . scaffold335 WUBlastX DNA_Crypton 441802 442092 64 - . . scaffold335 WUBlastX LINE_RTE-X 443996 444286 49 - . . scaffold335 TRF Tandem_Repeat 444411 444444 50 + . . scaffold335 TRF Tandem_Repeat 444769 444800 64 + . . scaffold335 GLEAN promoter 445697 446696 0.999675 + . ID=CGI_10017109; scaffold335 GLEAN mRNA 446697 456774 0.999675 + . ID=CGI_10017109; scaffold335 TRF Tandem_Repeat 449833 449881 98 + . . scaffold335 GLEAN mRNA 457868 460728 0.999968 - . ID=CGI_10017110; scaffold335 GLEAN promoter 460729 461728 0.999968 - . ID=CGI_10017110; scaffold335 GLEAN mRNA 462108 464284 1 - . ID=CGI_10017111; scaffold335 GLEAN promoter 464285 465284 1 - . ID=CGI_10017111; scaffold335 TRF Tandem_Repeat 465245 465437 248 + . . scaffold335 TRF Tandem_Repeat 465245 465437 237 + . . scaffold335 TRF Tandem_Repeat 465245 465437 237 + . . scaffold335 WUBlastX LINE_L1 467127 467498 72 - . . scaffold335 WUBlastX LINE_L1 467229 467528 84 - . . scaffold335 WUBlastX LINE_L1-Tx1 467286 467579 146 - . . scaffold335 WUBlastX LINE_L1 467337 467624 113 - . . scaffold335 WUBlastX LINE_L1 468338 468457 20 - . . scaffold335 WUBlastX LINE_L1-Tx1 468456 469055 165 - . . scaffold335 GLEAN promoter 468736 469735 0.288148 + . ID=CGI_10017112; scaffold335 WUBlastX LINE_L1 468852 469100 39 - . . scaffold335 GLEAN mRNA 469736 479813 0.288148 + . ID=CGI_10017112; scaffold335 WUBlastX DNA_MuDR 479784 480638 34 + . . scaffold335 WUBlastX DNA_MuDR 479850 480101 78 + . . scaffold335 TRF Tandem_Repeat 483515 483590 116 + . . scaffold33500 GLEAN promoter 1 156 0.999999 + . ID=CGI_10001063; scaffold33500 GLEAN mRNA 157 2582 0.999999 + . ID=CGI_10001063; scaffold33500 GLEAN mRNA 3265 4893 0.83621 - . ID=CGI_10001064; scaffold33500 GLEAN promoter 4869 5868 1 + . ID=CGI_10001065; scaffold33500 GLEAN promoter 4894 5893 0.83621 - . ID=CGI_10001064; scaffold33500 GLEAN mRNA 5869 8996 1 + . ID=CGI_10001065; scaffold33502 TRF Tandem_Repeat 3120 3160 82 + . . scaffold33502 TRF Tandem_Repeat 5562 5594 57 + . . scaffold33502 TRF Tandem_Repeat 11352 11405 108 + . . scaffold33502 WUBlastX LINE_Penelope 11830 12222 21 - . . scaffold33502 WUBlastX LINE_Penelope 11978 12433 23 - . . scaffold33502 WUBlastX LINE_Penelope 12107 12640 73 - . . scaffold33502 WUBlastX LINE_Penelope 12239 12736 83 - . . scaffold33502 WUBlastX LINE_Penelope 12725 12859 61 - . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2058 2363 44 + . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2326 2697 100 + . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2524 2697 100 + . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2524 2745 94 + . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2524 2787 70 + . . scaffold33518 WUBlastX DNA_TcMar-Tc1 2766 2888 56 + . . scaffold33518 WUBlastX LINE_L1-Tx1 3998 4156 21 + . . scaffold33518 WUBlastX LINE_L1-Tx1 4055 4156 25 + . . scaffold33518 WUBlastX LINE_L1 4767 5231 91 + . . scaffold33518 WUBlastX LINE_RTE-BovB 10193 10420 133 + . . scaffold33518 WUBlastX LINE_RTE-BovB 10397 10600 135 + . . scaffold33518 WUBlastX LINE_RTE-X 10569 10850 61 + . . scaffold33518 WUBlastX LINE_RTE-BovB 10644 10847 123 + . . scaffold33518 WUBlastX LINE_RTE-BovB 10845 11162 120 + . . scaffold33530 WUBlastX LINE_L1-Tx1 9339 10625 86 - . . scaffold33530 WUBlastX LINE_L1-Tx1 9951 10628 278 - . . scaffold33530 WUBlastX LINE_I 10646 10702 26 - . . scaffold33530 WUBlastX LINE_L1-Tx1 10658 10903 171 - . . scaffold33530 WUBlastX LINE_L1-Tx1 10867 11391 176 - . . scaffold33584 GLEAN promoter 1 836 0.999372 + . ID=CGI_10001098; scaffold33584 GLEAN promoter 389 1388 0.995292 + . ID=CGI_10001099; scaffold33584 TRF Tandem_Repeat 683 818 147 + . . scaffold33584 TRF Tandem_Repeat 683 818 175 + . . scaffold33584 GLEAN mRNA 837 1232 0.999372 + . ID=CGI_10001098; scaffold33584 GLEAN mRNA 1389 6977 0.995292 + . ID=CGI_10001099; scaffold33584 GLEAN promoter 6101 7100 0.996193 + . ID=CGI_10001100; scaffold33584 GLEAN mRNA 7101 8771 0.996193 + . ID=CGI_10001100; scaffold33584 WUBlastX LTR_Gypsy 13606 14238 20 + . . scaffold33584 WUBlastX LTR_Gypsy 13648 14121 39 + . . scaffold33584 WUBlastX LTR_Gypsy 13765 14070 50 + . . scaffold33588 TRF Tandem_Repeat 745 786 84 + . . scaffold33588 TRF Tandem_Repeat 828 868 55 + . . scaffold33588 TRF Tandem_Repeat 3311 3455 115 + . . scaffold33588 TRF Tandem_Repeat 3363 3465 74 + . . scaffold33588 TRF Tandem_Repeat 3367 3469 52 + . . scaffold33588 TRF Tandem_Repeat 7385 7433 98 + . . scaffold33588 TRF Tandem_Repeat 9309 9441 67 + . . scaffold33588 WUBlastX LTR_Gypsy 13606 13836 98 + . . scaffold33588 WUBlastX LTR_Gypsy-Cigr 13850 14170 111 + . . scaffold33588 WUBlastX LTR_Gypsy 13904 14188 157 + . . scaffold33588 WUBlastX LTR_Gypsy 13904 14359 98 + . . scaffold33590 GLEAN promoter 721 1720 1 + . ID=CGI_10001096; scaffold33590 GLEAN mRNA 1721 8498 1 + . ID=CGI_10001096; scaffold33590 GLEAN mRNA 7558 14785 1 - . ID=CGI_10001097; scaffold33590 GLEAN promoter 14786 14818 1 - . ID=CGI_10001097; scaffold33594 GLEAN promoter 614 1613 1 + . ID=CGI_10001106; scaffold33594 GLEAN mRNA 1614 4823 1 + . ID=CGI_10001106; scaffold33594 GLEAN mRNA 6432 13508 1 - . ID=CGI_10001107; scaffold33594 GLEAN promoter 13509 14508 1 - . ID=CGI_10001107; scaffold33594 WUBlastX LTR_Ngaro 13528 14265 174 + . . scaffold33594 WUBlastX LTR_Ngaro 13627 14055 196 + . . scaffold33594 WUBlastX LTR_Ngaro 14144 14872 187 + . . scaffold33594 WUBlastX LTR_Ngaro 14309 14872 290 + . . scaffold336 TRF Tandem_Repeat 28439 28504 132 + . . scaffold336 WUBlastX LINE_CR1-L2 30028 30627 105 + . . scaffold336 WUBlastX LINE_L2 30765 30923 27 + . . scaffold336 TRF Tandem_Repeat 38245 38297 106 + . . scaffold336 TRF Tandem_Repeat 39319 39432 86 + . . scaffold336 TRF Tandem_Repeat 39319 39432 115 + . . scaffold336 TRF Tandem_Repeat 39937 40090 114 + . . scaffold336 TRF Tandem_Repeat 41370 41422 92 + . . scaffold336 TRF Tandem_Repeat 42397 42463 127 + . . scaffold336 TRF Tandem_Repeat 45407 45438 64 + . . scaffold336 TRF Tandem_Repeat 70583 70680 178 + . . scaffold336 TRF Tandem_Repeat 71142 72076 381 + . . scaffold336 TRF Tandem_Repeat 71144 71867 359 + . . scaffold336 TRF Tandem_Repeat 71159 71372 187 + . . scaffold336 TRF Tandem_Repeat 71472 72073 412 + . . scaffold336 TRF Tandem_Repeat 76435 76474 80 + . . scaffold336 TRF Tandem_Repeat 76722 76778 114 + . . scaffold336 TRF Tandem_Repeat 78997 79076 142 + . . scaffold336 GLEAN promoter 83535 84534 0.944127 + . ID=CGI_10012564; scaffold336 GLEAN mRNA 84535 87396 0.944127 + . ID=CGI_10012564; scaffold336 TRF Tandem_Repeat 97013 97101 108 + . . scaffold336 TRF Tandem_Repeat 102842 103132 546 + . . scaffold336 TRF Tandem_Repeat 103253 103292 80 + . . scaffold336 TRF Tandem_Repeat 106830 107430 455 + . . scaffold336 TRF Tandem_Repeat 106830 107430 539 + . . scaffold336 GLEAN promoter 109185 110184 0.483603 + . ID=CGI_10012565; scaffold336 GLEAN mRNA 110185 147330 0.483603 + . ID=CGI_10012565; scaffold336 TRF Tandem_Repeat 110607 110644 67 + . . scaffold336 GLEAN mRNA 112549 116829 0.993907 - . ID=CGI_10012566; scaffold336 GLEAN promoter 116830 117829 0.993907 - . ID=CGI_10012566; scaffold336 TRF Tandem_Repeat 119767 120944 1263 + . . scaffold336 TRF Tandem_Repeat 121627 121913 409 + . . scaffold336 TRF Tandem_Repeat 123769 123798 51 + . . scaffold336 TRF Tandem_Repeat 123812 123836 50 + . . scaffold336 TRF Tandem_Repeat 134773 134805 66 + . . scaffold336 TRF Tandem_Repeat 140110 140427 385 + . . scaffold336 TRF Tandem_Repeat 141420 141634 351 + . . scaffold336 TRF Tandem_Repeat 143910 143935 52 + . . scaffold336 TRF Tandem_Repeat 143949 143991 86 + . . scaffold336 TRF Tandem_Repeat 146013 146059 94 + . . scaffold336 TRF Tandem_Repeat 148670 149271 928 + . . scaffold336 TRF Tandem_Repeat 150568 150999 519 + . . scaffold336 TRF Tandem_Repeat 150568 150999 459 + . . scaffold336 GLEAN mRNA 153891 174105 1 - . ID=CGI_10012567; scaffold336 TRF Tandem_Repeat 165383 166067 752 + . . scaffold336 TRF Tandem_Repeat 169027 169070 88 + . . scaffold336 WUBlastX LINE_RTE-X 169209 169739 178 + . . scaffold336 WUBlastX LINE_RTE-X 169721 169804 36 + . . scaffold336 GLEAN promoter 174106 175105 1 - . ID=CGI_10012567; scaffold336 TRF Tandem_Repeat 175898 175979 58 + . . scaffold336 TRF Tandem_Repeat 188419 188494 152 + . . scaffold336 TRF Tandem_Repeat 189265 190328 1464 + . . scaffold336 TRF Tandem_Repeat 191492 192308 1190 + . . scaffold336 GLEAN promoter 194464 195463 0.66246 + . ID=CGI_10012568; scaffold336 GLEAN mRNA 195464 211672 0.66246 + . ID=CGI_10012568; scaffold336 TRF Tandem_Repeat 198449 198513 112 + . . scaffold336 WUBlastX LINE_L2 199104 199547 133 - . . scaffold336 TRF Tandem_Repeat 202962 203799 754 + . . scaffold336 GLEAN mRNA 208327 217851 1 - . ID=CGI_10012569; scaffold336 TRF Tandem_Repeat 211862 211983 217 + . . scaffold336 WUBlastX LINE_RTE-X 215683 216147 62 - . . scaffold336 WUBlastX LINE_RTE-X 216114 216233 50 - . . scaffold336 WUBlastX LINE_RTE-X 216135 216251 49 - . . scaffold336 WUBlastX LINE_L2 216227 216289 29 - . . scaffold336 WUBlastX LINE_L2 216227 216301 28 - . . scaffold336 WUBlastX LINE_RTE-X 216305 216421 27 + . . scaffold336 WUBlastX LINE_RTE-X 216424 216585 36 + . . scaffold336 WUBlastX LINE_CR1 216723 217247 77 - . . scaffold336 WUBlastX LINE_CR1 216807 217226 89 - . . scaffold336 WUBlastX LINE_CR1 216933 217328 109 - . . scaffold336 WUBlastX LINE_L2 216939 217262 168 - . . scaffold336 WUBlastX LINE_CR1 216957 217439 44 - . . scaffold336 WUBlastX LINE_CR1-L2 217513 217590 25 - . . scaffold336 GLEAN promoter 217852 218851 1 - . ID=CGI_10012569; scaffold336 WUBlastX LINE_L2 217927 217998 20 - . . scaffold336 GLEAN promoter 218786 219785 0.999817 + . ID=CGI_10012570; scaffold336 GLEAN mRNA 219786 227102 0.999817 + . ID=CGI_10012570; scaffold336 GLEAN promoter 226106 227105 0.122362 + . ID=CGI_10012571; scaffold336 GLEAN mRNA 227106 240222 0.122362 + . ID=CGI_10012571; scaffold336 TRF Tandem_Repeat 232229 232328 87 + . . scaffold336 GLEAN mRNA 248063 266600 0.999573 - . ID=CGI_10012572; scaffold336 GLEAN promoter 255875 256874 0.998507 + . ID=CGI_10012573; scaffold336 GLEAN mRNA 256875 261793 0.998507 + . ID=CGI_10012573; scaffold336 TRF Tandem_Repeat 259073 259123 102 + . . scaffold336 GLEAN promoter 266601 267600 0.999573 - . ID=CGI_10012572; scaffold336 GLEAN mRNA 270645 272596 0.889923 - . ID=CGI_10012574; scaffold336 GLEAN promoter 272597 273596 0.889923 - . ID=CGI_10012574; scaffold336 GLEAN mRNA 277327 289494 0.999371 - . ID=CGI_10012575; scaffold336 TRF Tandem_Repeat 287586 287660 150 + . . scaffold336 TRF Tandem_Repeat 287841 287925 152 + . . scaffold336 GLEAN promoter 288953 289952 0.980662 + . ID=CGI_10012576; scaffold336 GLEAN promoter 289495 290494 0.999371 - . ID=CGI_10012575; scaffold336 GLEAN mRNA 289953 293485 0.980662 + . ID=CGI_10012576; scaffold336 GLEAN mRNA 294981 297585 1 - . ID=CGI_10012577; scaffold336 GLEAN promoter 297586 298585 1 - . ID=CGI_10012577; scaffold336 TRF Tandem_Repeat 298266 298412 82 + . . scaffold336 GLEAN mRNA 299791 303433 0.999997 - . ID=CGI_10012578; scaffold336 TRF Tandem_Repeat 301104 301137 68 + . . scaffold336 GLEAN promoter 303434 304433 0.999997 - . ID=CGI_10012578; scaffold336 TRF Tandem_Repeat 304150 304248 191 + . . scaffold336 TRF Tandem_Repeat 304897 304990 125 + . . scaffold336 TRF Tandem_Repeat 305037 305125 137 + . . scaffold336 TRF Tandem_Repeat 306225 306268 79 + . . scaffold336 TRF Tandem_Repeat 306271 306321 102 + . . scaffold336 WUBlastX LINE_RTE-X 307831 308238 67 - . . scaffold336 WUBlastX LINE_RTE-X 307912 308247 79 - . . scaffold336 WUBlastX LINE_RTE-X 308252 308482 47 - . . scaffold336 WUBlastX LINE_RTE-X 308466 308996 48 - . . scaffold336 WUBlastX LINE_RTE-X 308559 309002 48 - . . scaffold336 WUBlastX LINE_RTE-X 308787 308972 75 - . . scaffold336 WUBlastX LINE_RTE-X 308814 309017 66 - . . scaffold336 GLEAN mRNA 312132 315523 0.999221 - . ID=CGI_10012579; scaffold336 GLEAN promoter 315524 316523 0.999221 - . ID=CGI_10012579; scaffold336 GLEAN mRNA 316102 318852 0.801624 - . ID=CGI_10012580; scaffold336 TRF Tandem_Repeat 318565 318603 78 + . . scaffold336 TRF Tandem_Repeat 318621 318660 80 + . . scaffold336 GLEAN promoter 318853 319852 0.801624 - . ID=CGI_10012580; scaffold336 TRF Tandem_Repeat 318868 319596 1087 + . . scaffold336 TRF Tandem_Repeat 318868 319596 957 + . . scaffold336 TRF Tandem_Repeat 323356 323417 124 + . . scaffold33610 TRF Tandem_Repeat 3 259 207 + . . scaffold33610 WUBlastX LTR_Gypsy 5999 6376 26 - . . scaffold33610 WUBlastX LTR_Gypsy 6002 6181 147 - . . scaffold33610 WUBlastX LTR_Gypsy 6966 8126 450 - . . scaffold33610 WUBlastX LTR_Gypsy 10663 10818 24 - . . scaffold33610 WUBlastX LTR_Gypsy 10922 11002 20 - . . scaffold33610 WUBlastX LTR_Gypsy 11303 12508 229 - . . scaffold33610 WUBlastX LTR_Gypsy 11405 12415 461 - . . scaffold33610 WUBlastX LTR_Gypsy 11585 12412 683 - . . scaffold33610 WUBlastX LTR_Gypsy 12507 12818 35 - . . scaffold33610 WUBlastX LTR_Gypsy 12984 13097 22 - . . scaffold33610 WUBlastX LTR_Gypsy 13054 13329 82 - . . scaffold33610 WUBlastX LTR_Gypsy 13054 13404 59 - . . scaffold33610 WUBlastX LTR_Gypsy 13362 13493 24 - . . scaffold33610 WUBlastX LTR_Gypsy 13996 14055 27 - . . scaffold33618 WUBlastX LTR_DIRS 2649 3305 98 + . . scaffold33618 WUBlastX LTR_Gypsy 3538 3801 32 + . . scaffold33618 WUBlastX LTR_DIRS 3601 3879 48 + . . scaffold33618 WUBlastX LTR_DIRS 3735 4232 117 + . . scaffold33618 WUBlastX LTR_DIRS 3909 4235 133 + . . scaffold33618 WUBlastX LTR_DIRS 3990 4232 187 + . . scaffold33618 WUBlastX LTR_DIRS 4238 4750 355 + . . scaffold33618 WUBlastX LTR_DIRS 4705 5583 645 + . . scaffold33618 WUBlastX LTR_DIRS 5570 6124 151 + . . scaffold33618 WUBlastX LTR_DIRS 5672 6577 551 + . . scaffold33618 WUBlastX LINE_L2 11256 11525 75 - . . scaffold33618 WUBlastX LINE_L2 11337 11525 136 - . . scaffold33618 WUBlastX LINE_L2 11355 11558 110 - . . scaffold33628 GLEAN mRNA 1528 5145 0.999997 - . ID=CGI_10001103; scaffold33628 GLEAN promoter 5146 6145 0.999997 - . ID=CGI_10001103; scaffold33638 TRF Tandem_Repeat 1 67 89 + . . scaffold33638 TRF Tandem_Repeat 1436 1479 70 + . . scaffold33638 TRF Tandem_Repeat 1449 1482 50 + . . scaffold33638 WUBlastX LINE_Penelope 2596 2841 78 + . . scaffold33638 WUBlastX DNA_Kolobok-IS4 3468 4034 87 + . . scaffold33638 WUBlastX DNA_IS4EU 3672 4034 114 + . . scaffold33638 WUBlastX DNA_IS4EU 4573 5325 281 + . . scaffold33638 WUBlastX DNA_Kolobok-IS4 5903 6967 496 - . . scaffold33638 WUBlastX LINE_RTE-X 8404 8769 64 + . . scaffold33638 TRF Tandem_Repeat 11012 12005 951 + . . scaffold33640 WUBlastX LINE_RTE-X 9265 9525 51 - . . scaffold33640 WUBlastX LINE_RTE-X 9565 10176 209 - . . scaffold33640 TRF Tandem_Repeat 11682 11887 227 + . . scaffold33640 TRF Tandem_Repeat 11683 11975 187 + . . scaffold33640 TRF Tandem_Repeat 13406 13545 60 + . . scaffold33656 GLEAN promoter 11398 12397 1 + . ID=CGI_10001109; scaffold33656 GLEAN mRNA 12398 14692 1 + . ID=CGI_10001109; scaffold337 GLEAN mRNA 31021 61245 0.967748 - . ID=CGI_10028049; scaffold337 TRF Tandem_Repeat 32618 32749 250 + . . scaffold337 WUBlastX DNA_TcMar-Tc1 38261 38356 41 - . . scaffold337 WUBlastX DNA_TcMar-Tc1 38353 38463 61 - . . scaffold337 TRF Tandem_Repeat 51205 51273 111 + . . scaffold337 TRF Tandem_Repeat 57761 57810 73 + . . scaffold337 GLEAN promoter 61246 62245 0.967748 - . ID=CGI_10028049; scaffold337 WUBlastX DNA_hAT-Ac 62493 63137 64 + . . scaffold337 WUBlastX DNA_hAT-Ac 62717 63469 243 + . . scaffold337 WUBlastX DNA_hAT-Ac 63462 63647 27 + . . scaffold337 WUBlastX DNA_hAT 63507 63695 28 + . . scaffold337 WUBlastX DNA_hAT-Ac 64246 64536 67 + . . scaffold337 WUBlastX DNA_hAT-Ac 64252 64494 124 + . . scaffold337 WUBlastX DNA_hAT-Ac 64494 64580 43 + . . scaffold337 TRF Tandem_Repeat 64684 64729 69 + . . scaffold337 TRF Tandem_Repeat 71408 71494 86 + . . scaffold337 TRF Tandem_Repeat 72000 72062 117 + . . scaffold337 TRF Tandem_Repeat 73104 73138 70 + . . scaffold337 TRF Tandem_Repeat 73316 73356 73 + . . scaffold337 TRF Tandem_Repeat 74322 74382 51 + . . scaffold337 TRF Tandem_Repeat 74323 74409 97 + . . scaffold337 TRF Tandem_Repeat 74335 74409 55 + . . scaffold337 TRF Tandem_Repeat 74405 74495 73 + . . scaffold337 TRF Tandem_Repeat 74481 74540 52 + . . scaffold337 TRF Tandem_Repeat 77071 77137 89 + . . scaffold337 TRF Tandem_Repeat 79257 79297 82 + . . scaffold337 TRF Tandem_Repeat 80060 80126 80 + . . scaffold337 TRF Tandem_Repeat 83595 83668 148 + . . scaffold337 WUBlastX LTR_Ngaro 86020 86760 207 + . . scaffold337 WUBlastX LTR_Ngaro 86290 86907 75 + . . scaffold337 WUBlastX LTR_Ngaro 87011 88585 1068 + . . scaffold337 WUBlastX LTR_Ngaro 88495 89184 150 + . . scaffold337 WUBlastX LTR_Ngaro 89322 89498 87 + . . scaffold337 WUBlastX LTR_Ngaro 89361 89492 89 + . . scaffold337 WUBlastX LINE_RTE-X 89734 90090 35 + . . scaffold337 TRF Tandem_Repeat 117938 118160 338 + . . scaffold337 TRF Tandem_Repeat 117938 118301 333 + . . scaffold337 TRF Tandem_Repeat 118917 118977 50 + . . scaffold337 TRF Tandem_Repeat 118922 119134 80 + . . scaffold337 TRF Tandem_Repeat 119049 119135 86 + . . scaffold337 TRF Tandem_Repeat 119049 119102 54 + . . scaffold337 TRF Tandem_Repeat 119383 119414 55 + . . scaffold337 TRF Tandem_Repeat 122676 122742 89 + . . scaffold337 TRF Tandem_Repeat 123526 123571 92 + . . scaffold337 WUBlastX LINE_L1-Tx1 143862 144440 108 - . . scaffold337 WUBlastX LINE_L1-Tx1 144003 144380 119 - . . scaffold337 WUBlastX LINE_L1-Tx1 144457 144711 21 - . . scaffold337 TRF Tandem_Repeat 153610 153679 115 + . . scaffold337 TRF Tandem_Repeat 184585 184643 95 + . . scaffold337 TRF Tandem_Repeat 199901 199952 95 + . . scaffold337 TRF Tandem_Repeat 201287 201316 60 + . . scaffold337 TRF Tandem_Repeat 201346 201371 52 + . . scaffold337 WUBlastX DNA_Maverick 203292 204182 250 + . . scaffold337 WUBlastX DNA_Maverick 203535 204182 371 + . . scaffold337 WUBlastX DNA_Maverick 204574 205614 182 + . . scaffold337 WUBlastX DNA_Maverick 204730 205590 229 + . . scaffold337 WUBlastX DNA_Maverick 204937 205611 233 + . . scaffold337 TRF Tandem_Repeat 205839 205876 76 + . . scaffold337 WUBlastX DNA_Maverick 205955 206527 434 + . . scaffold337 WUBlastX LINE_L1-Tx1 208564 208827 84 - . . scaffold337 WUBlastX LINE_L1-Tx1 209077 209337 71 - . . scaffold337 WUBlastX DNA_Maverick 209348 209599 162 - . . scaffold337 WUBlastX DNA_Maverick 209608 209820 92 - . . scaffold337 TRF Tandem_Repeat 222881 223134 440 + . . scaffold337 WUBlastX RC_Helitron 224701 225024 41 + . . scaffold337 WUBlastX RC_Helitron 224755 225039 47 + . . scaffold337 WUBlastX RC_Helitron 225075 226148 133 + . . scaffold337 WUBlastX RC_Helitron 226008 226250 31 + . . scaffold337 WUBlastX RC_Helitron 227334 228053 93 + . . scaffold337 WUBlastX RC_Helitron 227469 228251 173 + . . scaffold337 WUBlastX RC_Helitron 228320 229093 106 + . . scaffold337 WUBlastX DNA_Maverick 233347 233745 54 + . . scaffold337 WUBlastX DNA_Maverick 233681 234241 120 + . . scaffold337 WUBlastX LINE_RTE-X 234259 235188 295 - . . scaffold337 WUBlastX LINE_Jockey 235158 235307 60 - . . scaffold337 WUBlastX LINE_Proto2 235203 235520 47 - . . scaffold337 WUBlastX LINE_L1 235230 235472 57 - . . scaffold337 WUBlastX LINE_R2 235873 235935 22 - . . scaffold337 TRF Tandem_Repeat 239014 239224 386 + . . scaffold337 GLEAN mRNA 267788 275296 0.996603 - . ID=CGI_10028051; scaffold337 TRF Tandem_Repeat 270538 270598 59 + . . scaffold337 GLEAN promoter 275297 276296 0.996603 - . ID=CGI_10028051; scaffold337 TRF Tandem_Repeat 276163 276210 96 + . . scaffold337 TRF Tandem_Repeat 280676 280720 90 + . . scaffold337 TRF Tandem_Repeat 280837 280882 92 + . . scaffold337 TRF Tandem_Repeat 289044 289108 130 + . . scaffold337 GLEAN promoter 291145 292144 0.789546 + . ID=CGI_10028052; scaffold337 GLEAN mRNA 292145 309234 0.789546 + . ID=CGI_10028052; scaffold337 TRF Tandem_Repeat 293923 293978 112 + . . scaffold337 TRF Tandem_Repeat 301203 301236 68 + . . scaffold337 TRF Tandem_Repeat 311069 311112 70 + . . scaffold337 TRF Tandem_Repeat 311164 311220 96 + . . scaffold337 GLEAN mRNA 313418 320075 0.58535 - . ID=CGI_10028053; scaffold337 TRF Tandem_Repeat 314214 314404 129 + . . scaffold337 TRF Tandem_Repeat 315270 315323 65 + . . scaffold337 GLEAN promoter 320076 321075 0.58535 - . ID=CGI_10028053; scaffold337 TRF Tandem_Repeat 321613 321662 100 + . . scaffold337 GLEAN mRNA 322838 323293 0.999434 - . ID=CGI_10028054; scaffold337 GLEAN promoter 323294 324293 0.999434 - . ID=CGI_10028054; scaffold337 GLEAN mRNA 323736 324925 0.651135 - . ID=CGI_10028055; scaffold337 GLEAN promoter 324926 325925 0.651135 - . ID=CGI_10028055; scaffold337 TRF Tandem_Repeat 330344 330414 115 + . . scaffold337 WUBlastX LTR_Gypsy 330489 331268 47 - . . scaffold337 WUBlastX LTR_Gypsy-Cigr 330684 331304 129 - . . scaffold337 WUBlastX LTR_Gypsy-Cigr 330831 331319 157 - . . scaffold337 TRF Tandem_Repeat 333537 333635 57 + . . scaffold337 WUBlastX LTR_Copia 336889 337581 199 + . . scaffold337 WUBlastX LTR_Copia 336907 337416 245 + . . scaffold337 WUBlastX LINE_RTE-X 364526 365695 769 + . . scaffold337 WUBlastX LINE_RTE-X 365609 366394 431 + . . scaffold337 WUBlastX LINE_RTE-X 367072 367137 33 + . . scaffold337 WUBlastX LINE_RTE-X 367084 367260 36 + . . scaffold337 GLEAN mRNA 370039 371701 0.999632 - . ID=CGI_10028056; scaffold337 GLEAN promoter 371702 372701 0.999632 - . ID=CGI_10028056; scaffold337 TRF Tandem_Repeat 372343 372432 135 + . . scaffold337 TRF Tandem_Repeat 373941 374020 53 + . . scaffold337 TRF Tandem_Repeat 373950 374163 61 + . . scaffold337 WUBlastX LINE_RTE-X 375380 375586 35 - . . scaffold337 WUBlastX LINE_RTE-X 375496 375876 81 - . . scaffold337 WUBlastX LINE_RTE-X 375586 375948 75 - . . scaffold337 WUBlastX LINE_RTE-X 376174 377094 186 - . . scaffold337 WUBlastX LINE_RTE-X 377082 377945 333 - . . scaffold337 WUBlastX LINE_Jockey 377880 377957 20 - . . scaffold337 GLEAN promoter 377973 378972 0.982802 + . ID=CGI_10028057; scaffold337 GLEAN mRNA 378973 380982 0.982802 + . ID=CGI_10028057; scaffold337 GLEAN mRNA 382979 405436 0.151687 - . ID=CGI_10028058; scaffold337 GLEAN promoter 390029 391028 1 + . ID=CGI_10028059; scaffold337 GLEAN mRNA 391029 392858 1 + . ID=CGI_10028059; scaffold337 TRF Tandem_Repeat 398038 398118 112 + . . scaffold337 TRF Tandem_Repeat 400422 400459 67 + . . scaffold337 TRF Tandem_Repeat 403783 403828 92 + . . scaffold337 GLEAN promoter 405437 406436 0.151687 - . ID=CGI_10028058; scaffold337 GLEAN mRNA 406263 413318 0.999326 - . ID=CGI_10028060; scaffold337 GLEAN promoter 410898 411897 0.999372 + . ID=CGI_10028061; scaffold337 GLEAN mRNA 411898 412113 0.999372 + . ID=CGI_10028061; scaffold337 GLEAN promoter 413319 414318 0.999326 - . ID=CGI_10028060; scaffold337 TRF Tandem_Repeat 415273 415367 174 + . . scaffold337 TRF Tandem_Repeat 415381 415414 68 + . . scaffold337 GLEAN mRNA 416854 420549 0.974516 - . ID=CGI_10028062; scaffold337 GLEAN promoter 420550 421549 0.974516 - . ID=CGI_10028062; scaffold337 TRF Tandem_Repeat 421093 421346 490 + . . scaffold337 TRF Tandem_Repeat 423316 423378 126 + . . scaffold337 GLEAN promoter 427769 428768 0.625753 + . ID=CGI_10028063; scaffold337 GLEAN mRNA 428769 437472 0.625753 + . ID=CGI_10028063; scaffold337 TRF Tandem_Repeat 431082 431515 726 + . . scaffold337 TRF Tandem_Repeat 431084 431117 59 + . . scaffold337 TRF Tandem_Repeat 431086 431515 728 + . . scaffold337 TRF Tandem_Repeat 431188 431221 68 + . . scaffold337 TRF Tandem_Repeat 431292 431323 64 + . . scaffold337 TRF Tandem_Repeat 431490 431515 52 + . . scaffold337 TRF Tandem_Repeat 433707 434661 986 + . . scaffold337 WUBlastX LINE_CR1 440422 441435 149 - . . scaffold337 WUBlastX LINE_CR1 440656 441435 478 - . . scaffold337 WUBlastX LINE_CR1 441437 441628 61 - . . scaffold337 WUBlastX LINE_CR1 441600 441851 100 - . . scaffold337 WUBlastX LINE_CR1 441627 442046 21 - . . scaffold337 WUBlastX LINE_CR1 441627 441971 46 - . . scaffold337 WUBlastX LINE_CR1 441630 441911 99 - . . scaffold337 WUBlastX LINE_CR1 442017 442094 20 - . . scaffold337 GLEAN promoter 442211 443210 0.999995 + . ID=CGI_10028064; scaffold337 GLEAN mRNA 443211 446323 0.999995 + . ID=CGI_10028064; scaffold337 TRF Tandem_Repeat 445848 445919 144 + . . scaffold337 GLEAN promoter 446230 447229 0.969309 + . ID=CGI_10028065; scaffold337 GLEAN mRNA 447230 448516 0.969309 + . ID=CGI_10028065; scaffold337 GLEAN mRNA 448587 472744 0.776768 - . ID=CGI_10028066; scaffold337 TRF Tandem_Repeat 449499 449851 502 + . . scaffold337 TRF Tandem_Repeat 450932 450987 112 + . . scaffold337 TRF Tandem_Repeat 465209 465280 144 + . . scaffold337 TRF Tandem_Repeat 469914 469948 61 + . . scaffold337 GLEAN promoter 472745 473744 0.776768 - . ID=CGI_10028066; scaffold337 WUBlastX LINE_CR1 475948 476037 42 + . . scaffold337 WUBlastX LINE_L1 476314 476469 83 + . . scaffold337 WUBlastX LINE_Penelope 478753 478932 29 + . . scaffold337 WUBlastX LINE_Penelope 478998 479141 58 + . . scaffold337 TRF Tandem_Repeat 479156 479206 102 + . . scaffold337 GLEAN promoter 482649 483648 0.56595 + . ID=CGI_10028067; scaffold337 GLEAN mRNA 483649 507534 0.56595 + . ID=CGI_10028067; scaffold337 WUBlastX LTR_Gypsy 489176 489748 161 - . . scaffold337 WUBlastX LTR_Gypsy 489218 490069 150 - . . scaffold337 WUBlastX LTR_Gypsy 489977 490360 115 - . . scaffold337 WUBlastX LTR_Gypsy 490136 490378 146 - . . scaffold337 WUBlastX LTR_Gypsy 490375 490632 151 - . . scaffold337 WUBlastX LTR_Gypsy 490375 490878 46 - . . scaffold337 WUBlastX LTR_Gypsy 490375 490767 91 - . . scaffold337 TRF Tandem_Repeat 498062 498097 72 + . . scaffold337 TRF Tandem_Repeat 505351 505382 64 + . . scaffold337 TRF Tandem_Repeat 510315 510357 86 + . . scaffold337 WUBlastX LINE_RTE-X 510630 511331 101 - . . scaffold337 WUBlastX LINE_RTE-X 510630 511160 104 - . . scaffold337 TRF Tandem_Repeat 512841 512894 108 + . . scaffold337 TRF Tandem_Repeat 513459 513515 114 + . . scaffold337 TRF Tandem_Repeat 518662 518705 88 + . . scaffold337 TRF Tandem_Repeat 522912 522958 94 + . . scaffold337 TRF Tandem_Repeat 524016 524055 80 + . . scaffold337 TRF Tandem_Repeat 526941 526969 58 + . . scaffold337 TRF Tandem_Repeat 527029 527064 72 + . . scaffold337 GLEAN promoter 527186 528185 1 + . ID=CGI_10028068; scaffold337 TRF Tandem_Repeat 527326 527350 50 + . . scaffold337 TRF Tandem_Repeat 527643 527682 71 + . . scaffold337 TRF Tandem_Repeat 527926 527956 55 + . . scaffold337 GLEAN mRNA 528186 532166 1 + . ID=CGI_10028068; scaffold337 GLEAN promoter 531628 532627 0.427566 + . ID=CGI_10028069; scaffold337 GLEAN mRNA 532628 558703 0.427566 + . ID=CGI_10028069; scaffold337 TRF Tandem_Repeat 535440 535485 65 + . . scaffold337 TRF Tandem_Repeat 537221 537697 746 + . . scaffold337 TRF Tandem_Repeat 537329 537433 57 + . . scaffold337 TRF Tandem_Repeat 538122 538350 305 + . . scaffold337 TRF Tandem_Repeat 539971 540056 109 + . . scaffold337 TRF Tandem_Repeat 540070 541038 1697 + . . scaffold337 TRF Tandem_Repeat 541572 541725 272 + . . scaffold337 TRF Tandem_Repeat 559841 559874 61 + . . scaffold337 GLEAN mRNA 562237 577539 1 - . ID=CGI_10028070; scaffold337 TRF Tandem_Repeat 564925 564968 61 + . . scaffold337 TRF Tandem_Repeat 567181 567228 96 + . . scaffold337 TRF Tandem_Repeat 567314 567373 120 + . . scaffold337 WUBlastX LINE_RTE-BovB 570106 570582 28 + . . scaffold337 WUBlastX LINE_RTE-BovB 570423 570971 102 + . . scaffold337 WUBlastX LINE_RTE-BovB 570716 571057 64 + . . scaffold337 WUBlastX LINE_RTE-BovB 570716 571153 42 + . . scaffold337 TRF Tandem_Repeat 576971 577025 110 + . . scaffold337 GLEAN promoter 577540 578539 1 - . ID=CGI_10028070; scaffold337 TRF Tandem_Repeat 580831 581656 1296 + . . scaffold337 TRF Tandem_Repeat 581656 581720 130 + . . scaffold337 TRF Tandem_Repeat 582573 582603 55 + . . scaffold337 TRF Tandem_Repeat 582601 582662 124 + . . scaffold337 TRF Tandem_Repeat 586126 586160 70 + . . scaffold337 GLEAN mRNA 588533 627991 0.990668 - . ID=CGI_10028071; scaffold337 TRF Tandem_Repeat 598525 598807 449 + . . scaffold337 TRF Tandem_Repeat 599964 600223 376 + . . scaffold337 TRF Tandem_Repeat 599970 600222 183 + . . scaffold337 TRF Tandem_Repeat 602661 602785 223 + . . scaffold337 GLEAN promoter 615700 616699 0.999366 + . ID=CGI_10028072; scaffold337 TRF Tandem_Repeat 616245 616320 73 + . . scaffold337 GLEAN mRNA 616700 619954 0.999366 + . ID=CGI_10028072; scaffold337 TRF Tandem_Repeat 618055 618098 54 + . . scaffold337 TRF Tandem_Repeat 621923 622272 510 + . . scaffold337 TRF Tandem_Repeat 624173 624326 74 + . . scaffold337 TRF Tandem_Repeat 624413 624438 52 + . . scaffold337 GLEAN promoter 627992 628991 0.990668 - . ID=CGI_10028071; scaffold337 GLEAN promoter 628478 629477 0.999992 + . ID=CGI_10028073; scaffold337 GLEAN mRNA 629478 634660 0.999992 + . ID=CGI_10028073; scaffold337 TRF Tandem_Repeat 637674 637719 57 + . . scaffold337 TRF Tandem_Repeat 637675 637716 50 + . . scaffold337 TRF Tandem_Repeat 649677 649713 74 + . . scaffold337 GLEAN mRNA 652535 661174 1 - . ID=CGI_10028074; scaffold337 TRF Tandem_Repeat 653552 653577 52 + . . scaffold337 GLEAN promoter 661175 662174 1 - . ID=CGI_10028074; scaffold337 GLEAN mRNA 662017 667536 0.813146 - . ID=CGI_10028075; scaffold337 TRF Tandem_Repeat 662497 662853 300 + . . scaffold337 GLEAN promoter 667537 668536 0.813146 - . ID=CGI_10028075; scaffold337 TRF Tandem_Repeat 674054 674081 56 + . . scaffold337 TRF Tandem_Repeat 695827 695865 78 + . . scaffold337 GLEAN mRNA 699054 714177 0.611485 - . ID=CGI_10028076; scaffold337 TRF Tandem_Repeat 713585 713615 62 + . . scaffold337 GLEAN promoter 714178 715177 0.611485 - . ID=CGI_10028076; scaffold337 TRF Tandem_Repeat 725047 725108 115 + . . scaffold337 GLEAN promoter 725170 726169 0.702382 + . ID=CGI_10028077; scaffold337 GLEAN mRNA 726170 733464 0.702382 + . ID=CGI_10028077; scaffold337 GLEAN promoter 733025 734024 1 + . ID=CGI_10028078; scaffold337 GLEAN mRNA 734025 742033 1 + . ID=CGI_10028078; scaffold337 TRF Tandem_Repeat 742978 743038 74 + . . scaffold337 TRF Tandem_Repeat 745883 745957 150 + . . scaffold337 TRF Tandem_Repeat 747640 747676 56 + . . scaffold337 TRF Tandem_Repeat 749339 749400 124 + . . scaffold337 GLEAN promoter 749907 750906 0.999314 + . ID=CGI_10028079; scaffold337 GLEAN mRNA 750907 754377 0.999314 + . ID=CGI_10028079; scaffold337 GLEAN mRNA 754900 757322 0.998947 - . ID=CGI_10028080; scaffold337 GLEAN promoter 757323 758322 0.998947 - . ID=CGI_10028080; scaffold337 GLEAN mRNA 757390 759573 0.999999 - . ID=CGI_10028081; scaffold337 GLEAN promoter 759574 760573 0.999999 - . ID=CGI_10028081; scaffold337 GLEAN mRNA 759595 771259 0.932746 - . ID=CGI_10028082; scaffold337 GLEAN promoter 759833 760832 0.999676 + . ID=CGI_10028083; scaffold337 GLEAN mRNA 760833 793455 0.999676 + . ID=CGI_10028083; scaffold337 TRF Tandem_Repeat 764982 765010 51 + . . scaffold337 TRF Tandem_Repeat 769569 769599 62 + . . scaffold337 TRF Tandem_Repeat 769810 769862 99 + . . scaffold337 GLEAN promoter 771260 772259 0.932746 - . ID=CGI_10028082; scaffold337 TRF Tandem_Repeat 781016 781053 67 + . . scaffold337 TRF Tandem_Repeat 781051 781075 50 + . . scaffold337 TRF Tandem_Repeat 785915 785962 51 + . . scaffold337 TRF Tandem_Repeat 786298 786357 111 + . . scaffold337 TRF Tandem_Repeat 788147 788182 63 + . . scaffold337 TRF Tandem_Repeat 788358 788416 109 + . . scaffold337 GLEAN mRNA 802586 808449 0.733503 - . ID=CGI_10028084; scaffold337 TRF Tandem_Repeat 807353 807453 100 + . . scaffold337 TRF Tandem_Repeat 807353 807453 100 + . . scaffold337 GLEAN promoter 808450 809449 0.733503 - . ID=CGI_10028084; scaffold337 GLEAN promoter 820888 821887 0.523107 + . ID=CGI_10028085; scaffold337 GLEAN mRNA 821888 832083 0.523107 + . ID=CGI_10028085; scaffold337 TRF Tandem_Repeat 829129 829177 89 + . . scaffold337 TRF Tandem_Repeat 839044 839076 66 + . . scaffold337 WUBlastX DNA_TcMar-Marin 839324 839716 202 - . . scaffold337 WUBlastX DNA_TcMar-Marin 839894 840022 57 - . . scaffold337 WUBlastX DNA_TcMar-Marin 839980 840189 104 - . . scaffold337 WUBlastX DNA_TcMar-Marin 840183 840560 160 - . . scaffold337 TRF Tandem_Repeat 856015 856063 55 + . . scaffold337 TRF Tandem_Repeat 856760 856903 225 + . . scaffold337 TRF Tandem_Repeat 859082 859122 82 + . . scaffold337 TRF Tandem_Repeat 868004 868068 130 + . . scaffold337 TRF Tandem_Repeat 870599 870655 62 + . . scaffold337 TRF Tandem_Repeat 876914 876999 172 + . . scaffold337 TRF Tandem_Repeat 877630 877669 80 + . . scaffold337 WUBlastX LINE_RTE-BovB 886024 886191 61 + . . scaffold337 WUBlastX LINE_RTE-BovB 886197 886766 425 + . . scaffold337 GLEAN mRNA 892265 898813 1 - . ID=CGI_10028086; scaffold337 GLEAN promoter 898814 899813 1 - . ID=CGI_10028086; scaffold337 WUBlastX RC_Helitron 910916 911068 117 - . . scaffold337 WUBlastX RC_Helitron 910919 911098 113 - . . scaffold337 WUBlastX RC_Helitron 910919 911131 105 - . . scaffold337 WUBlastX RC_Helitron 911205 911948 334 - . . scaffold337 WUBlastX RC_Helitron 911954 912025 33 - . . scaffold337 WUBlastX RC_Helitron 912002 912211 122 - . . scaffold337 GLEAN mRNA 912502 926173 0.999981 - . ID=CGI_10028087; scaffold337 WUBlastX RC_Helitron 915075 915239 46 - . . scaffold337 WUBlastX RC_Helitron 915111 915239 76 - . . scaffold337 WUBlastX DNA_Helitron 915114 915299 74 - . . scaffold337 WUBlastX RC_Helitron 915301 916155 604 - . . scaffold337 WUBlastX RC_Helitron 916100 916213 138 - . . scaffold337 TRF Tandem_Repeat 919941 919974 50 + . . scaffold337 TRF Tandem_Repeat 920168 920255 126 + . . scaffold337 GLEAN promoter 926174 927173 0.999981 - . ID=CGI_10028087; scaffold337 TRF Tandem_Repeat 931046 931107 124 + . . scaffold337 TRF Tandem_Repeat 931888 931919 55 + . . scaffold337 GLEAN mRNA 937762 938897 0.810597 - . ID=CGI_10028088; scaffold337 GLEAN promoter 938898 939897 0.810597 - . ID=CGI_10028088; scaffold337 TRF Tandem_Repeat 945061 945232 245 + . . scaffold337 TRF Tandem_Repeat 961427 961492 132 + . . scaffold337 TRF Tandem_Repeat 967500 967555 71 + . . scaffold337 TRF Tandem_Repeat 967504 967558 65 + . . scaffold337 WUBlastX DNA_TcMar-Tc1 975984 976160 31 + . . scaffold337 WUBlastX LTR_DIRS 976668 976811 34 - . . scaffold337 TRF Tandem_Repeat 977485 977524 53 + . . scaffold337 TRF Tandem_Repeat 979161 979206 92 + . . scaffold337 TRF Tandem_Repeat 980488 981655 630 + . . scaffold337 TRF Tandem_Repeat 980551 981762 883 + . . scaffold337 TRF Tandem_Repeat 980785 981140 262 + . . scaffold337 TRF Tandem_Repeat 981054 981493 86 + . . scaffold337 TRF Tandem_Repeat 981064 981163 92 + . . scaffold337 TRF Tandem_Repeat 981160 981247 52 + . . scaffold337 TRF Tandem_Repeat 981307 981518 343 + . . scaffold337 TRF Tandem_Repeat 981604 981695 60 + . . scaffold337 TRF Tandem_Repeat 988635 988699 114 + . . scaffold337 WUBlastX LINE_Penelope 996018 996221 64 - . . scaffold337 WUBlastX LINE_Penelope 996033 996368 34 - . . scaffold337 WUBlastX LINE_Penelope 996505 996672 52 - . . scaffold337 WUBlastX LINE_Penelope 996541 996672 54 - . . scaffold337 WUBlastX LINE_Penelope 996735 996899 21 - . . scaffold337 WUBlastX LINE_Penelope 996783 996881 33 - . . scaffold337 TRF Tandem_Repeat 1002974 1003042 138 + . . scaffold337 GLEAN promoter 1019174 1020173 0.999999 + . ID=CGI_10028089; scaffold337 GLEAN mRNA 1020174 1020916 0.999999 + . ID=CGI_10028089; scaffold337 TRF Tandem_Repeat 1020383 1020434 104 + . . scaffold337 TRF Tandem_Repeat 1025844 1025894 102 + . . scaffold337 TRF Tandem_Repeat 1025906 1025943 67 + . . scaffold337 TRF Tandem_Repeat 1027994 1028026 66 + . . scaffold337 TRF Tandem_Repeat 1029954 1030169 360 + . . scaffold337 TRF Tandem_Repeat 1030171 1030863 930 + . . scaffold337 TRF Tandem_Repeat 1030172 1030874 931 + . . scaffold337 WUBlastX LINE_Penelope 1030932 1031108 24 - . . scaffold337 WUBlastX LINE_Penelope 1030986 1031195 73 - . . scaffold337 WUBlastX LINE_Penelope 1031186 1031842 196 - . . scaffold337 TRF Tandem_Repeat 1039627 1039778 108 + . . scaffold337 GLEAN mRNA 1044484 1047433 0.991213 - . ID=CGI_10028090; scaffold337 GLEAN promoter 1047434 1048433 0.991213 - . ID=CGI_10028090; scaffold337 TRF Tandem_Repeat 1048238 1048266 58 + . . scaffold337 TRF Tandem_Repeat 1048521 1048561 82 + . . scaffold337 TRF Tandem_Repeat 1048687 1048711 50 + . . scaffold337 TRF Tandem_Repeat 1048815 1048846 55 + . . scaffold337 TRF Tandem_Repeat 1049115 1049167 79 + . . scaffold337 WUBlastX LINE_L1-Tx1 1055424 1055801 245 - . . scaffold337 GLEAN promoter 1057886 1058885 0.758954 + . ID=CGI_10028091; scaffold337 GLEAN mRNA 1058886 1083021 0.758954 + . ID=CGI_10028091; scaffold337 TRF Tandem_Repeat 1060094 1060166 146 + . . scaffold337 TRF Tandem_Repeat 1068100 1068145 92 + . . scaffold337 TRF Tandem_Repeat 1075359 1075427 129 + . . scaffold337 TRF Tandem_Repeat 1077678 1077782 158 + . . scaffold337 WUBlastX LINE_L1 1078524 1078856 85 + . . scaffold337 WUBlastX LINE_L1-Tx1 1078581 1078859 148 + . . scaffold337 TRF Tandem_Repeat 1079550 1079600 102 + . . scaffold337 WUBlastX LINE_L1-Tx1 1080399 1080827 84 + . . scaffold337 WUBlastX LINE_L1-Tx1 1080474 1082891 770 + . . scaffold337 WUBlastX LINE_L1-Tx1 1082959 1083969 41 + . . scaffold337 WUBlastX LINE_RTE-X 1090067 1090603 111 - . . scaffold337 WUBlastX LINE_CR1-L2 1090262 1090789 70 - . . scaffold337 WUBlastX LINE_Jockey 1091505 1091813 52 - . . scaffold337 WUBlastX LINE_I 1091607 1091822 52 - . . scaffold337 WUBlastX LINE_RTE-X 1091631 1091813 87 - . . scaffold337 WUBlastX LINE_CR1 1091801 1092214 45 - . . scaffold337 TRF Tandem_Repeat 1092592 1092709 144 + . . scaffold337 GLEAN promoter 1096108 1097107 0.5 + . ID=CGI_10028092; scaffold337 GLEAN mRNA 1097108 1099577 0.5 + . ID=CGI_10028092; scaffold337 TRF Tandem_Repeat 1101554 1101620 89 + . . scaffold337 TRF Tandem_Repeat 1102694 1102760 89 + . . scaffold337 TRF Tandem_Repeat 1107423 1107469 85 + . . scaffold337 GLEAN promoter 1114130 1115129 0.999841 + . ID=CGI_10028093; scaffold337 GLEAN mRNA 1115130 1115846 0.999841 + . ID=CGI_10028093; scaffold337 TRF Tandem_Repeat 1115364 1115641 285 + . . scaffold337 TRF Tandem_Repeat 1115364 1115633 190 + . . scaffold337 TRF Tandem_Repeat 1121590 1121644 110 + . . scaffold337 GLEAN mRNA 1122757 1133845 0.999826 - . ID=CGI_10028094; scaffold337 TRF Tandem_Repeat 1122802 1123215 395 + . . scaffold337 TRF Tandem_Repeat 1122802 1123215 272 + . . scaffold337 TRF Tandem_Repeat 1133634 1133684 66 + . . scaffold337 GLEAN promoter 1133846 1134845 0.999826 - . ID=CGI_10028094; scaffold337 TRF Tandem_Repeat 1137886 1137915 60 + . . scaffold337 TRF Tandem_Repeat 1141756 1141815 70 + . . scaffold337 TRF Tandem_Repeat 1142097 1142148 50 + . . scaffold337 WUBlastX DNA_IS4EU 1145507 1145677 91 - . . scaffold337 WUBlastX DNA_IS4EU 1145697 1145888 116 - . . scaffold337 TRF Tandem_Repeat 1154222 1154264 59 + . . scaffold337 TRF Tandem_Repeat 1159251 1159347 117 + . . scaffold337 GLEAN mRNA 1165249 1165455 0.618241 - . ID=CGI_10028095; scaffold337 GLEAN promoter 1165456 1166455 0.618241 - . ID=CGI_10028095; scaffold337 GLEAN mRNA 1168511 1173338 1 - . ID=CGI_10028096; scaffold337 GLEAN promoter 1173339 1174338 1 - . ID=CGI_10028096; scaffold337 GLEAN mRNA 1175832 1177446 1 - . ID=CGI_10028097; scaffold337 GLEAN promoter 1177447 1178446 1 - . ID=CGI_10028097; scaffold337 WUBlastX LINE_L1 1180931 1181437 63 + . . scaffold337 WUBlastX LINE_L1-Tx1 1181048 1181833 115 + . . scaffold337 WUBlastX LINE_L1-Tx1 1181063 1181725 156 + . . scaffold337 TRF Tandem_Repeat 1182850 1182913 128 + . . scaffold337 TRF Tandem_Repeat 1184500 1184558 109 + . . scaffold337 TRF Tandem_Repeat 1185595 1185640 92 + . . scaffold337 WUBlastX LINE_RTE-X 1188783 1189409 70 + . . scaffold337 WUBlastX LINE_I-Nimb 1189191 1189415 73 + . . scaffold337 WUBlastX LINE_RTE-X 1189411 1190403 50 + . . scaffold337 WUBlastX LINE_Jockey 1189448 1189549 55 + . . scaffold337 WUBlastX LINE_RTE-X 1189817 1190083 72 + . . scaffold337 WUBlastX LINE_RTE-X 1190110 1190403 90 + . . scaffold337 GLEAN mRNA 1191695 1204808 0.999998 - . ID=CGI_10028098; scaffold337 TRF Tandem_Repeat 1200544 1200602 118 + . . scaffold337 GLEAN promoter 1204809 1205808 0.999998 - . ID=CGI_10028098; scaffold337 TRF Tandem_Repeat 1206444 1206502 118 + . . scaffold337 WUBlastX LINE_L1-Tx1 1209841 1209969 28 + . . scaffold337 WUBlastX LINE_L1 1210616 1210822 29 + . . scaffold337 TRF Tandem_Repeat 1214019 1214056 76 + . . scaffold337 GLEAN promoter 1217801 1218800 0.999431 + . ID=CGI_10028099; scaffold337 GLEAN mRNA 1218801 1219397 0.999431 + . ID=CGI_10028099; scaffold337 TRF Tandem_Repeat 1220109 1220163 74 + . . scaffold337 GLEAN promoter 1225390 1226389 0.931543 + . ID=CGI_10028100; scaffold337 GLEAN mRNA 1226390 1228091 0.931543 + . ID=CGI_10028100; scaffold337 GLEAN mRNA 1236023 1237342 0.94903 - . ID=CGI_10028101; scaffold337 GLEAN promoter 1237343 1238342 0.94903 - . ID=CGI_10028101; scaffold337 GLEAN mRNA 1245737 1247167 0.999891 - . ID=CGI_10028102; scaffold337 GLEAN promoter 1247168 1248167 0.999891 - . ID=CGI_10028102; scaffold337 GLEAN mRNA 1251066 1270696 0.999242 - . ID=CGI_10028103; scaffold337 TRF Tandem_Repeat 1270567 1270606 80 + . . scaffold337 GLEAN promoter 1270697 1271696 0.999242 - . ID=CGI_10028103; scaffold337 TRF Tandem_Repeat 1271281 1271343 108 + . . scaffold337 WUBlastX LTR_ERV1 1274610 1274879 131 - . . scaffold337 WUBlastX LTR_ERV1 1275168 1275308 65 - . . scaffold337 TRF Tandem_Repeat 1275917 1275960 52 + . . scaffold337 TRF Tandem_Repeat 1275918 1275968 52 + . . scaffold337 TRF Tandem_Repeat 1275924 1275990 75 + . . scaffold337 TRF Tandem_Repeat 1276027 1276066 71 + . . scaffold337 TRF Tandem_Repeat 1277915 1277983 57 + . . scaffold337 TRF Tandem_Repeat 1285553 1285597 90 + . . scaffold337 GLEAN promoter 1290229 1291228 0.608104 + . ID=CGI_10028104; scaffold337 GLEAN mRNA 1291229 1298585 0.608104 + . ID=CGI_10028104; scaffold337 TRF Tandem_Repeat 1295533 1296049 800 + . . scaffold337 TRF Tandem_Repeat 1296202 1296245 88 + . . scaffold337 GLEAN mRNA 1298606 1304708 0.990764 - . ID=CGI_10028105; scaffold337 GLEAN promoter 1304709 1305708 0.990764 - . ID=CGI_10028105; scaffold337 TRF Tandem_Repeat 1306787 1306876 180 + . . scaffold337 TRF Tandem_Repeat 1337813 1337849 74 + . . scaffold337 WUBlastX DNA_Harbinger 1338047 1338319 86 - . . scaffold337 WUBlastX DNA_Harbinger 1338050 1338271 93 - . . scaffold337 WUBlastX LTR_Gypsy 1342356 1345124 1983 - . . scaffold337 WUBlastX LTR_Gypsy 1342356 1346699 1782 - . . scaffold337 WUBlastX LTR_Gypsy 1345809 1346858 188 - . . scaffold337 WUBlastX LTR_Ngaro 1348392 1348952 91 - . . scaffold337 WUBlastX LTR_Ngaro 1348482 1348964 237 - . . scaffold337 GLEAN mRNA 1353740 1354714 1 - . ID=CGI_10028107; scaffold337 GLEAN promoter 1354715 1355714 1 - . ID=CGI_10028107; scaffold337 GLEAN mRNA 1361469 1365466 0.997057 - . ID=CGI_10028108; scaffold337 GLEAN promoter 1365467 1366466 0.997057 - . ID=CGI_10028108; scaffold337 GLEAN mRNA 1371188 1372020 0.556532 - . ID=CGI_10028109; scaffold337 GLEAN promoter 1372021 1373020 0.556532 - . ID=CGI_10028109; scaffold337 GLEAN mRNA 1375274 1378093 0.642716 - . ID=CGI_10028110; scaffold337 GLEAN promoter 1378094 1379093 0.642716 - . ID=CGI_10028110; scaffold337 GLEAN promoter 1389604 1390603 0.553087 + . ID=CGI_10028111; scaffold337 GLEAN mRNA 1390604 1393958 0.553087 + . ID=CGI_10028111; scaffold337 TRF Tandem_Repeat 1393496 1393670 126 + . . scaffold337 TRF Tandem_Repeat 1393496 1393576 135 + . . scaffold337 TRF Tandem_Repeat 1393500 1393658 105 + . . scaffold337 TRF Tandem_Repeat 1394032 1394178 101 + . . scaffold337 TRF Tandem_Repeat 1394033 1394091 91 + . . scaffold337 TRF Tandem_Repeat 1395171 1395244 55 + . . scaffold337 TRF Tandem_Repeat 1396711 1396746 72 + . . scaffold337 WUBlastX DNA_NOF? 1403281 1404030 30 + . . scaffold337 WUBlastX DNA_IS4EU 1403383 1403838 33 + . . scaffold337 GLEAN promoter 1415435 1416434 0.937779 + . ID=CGI_10028112; scaffold337 GLEAN mRNA 1416435 1418512 0.937779 + . ID=CGI_10028112; scaffold337 WUBlastX LINE_RTE-X 1426590 1427165 120 + . . scaffold337 WUBlastX LINE_RTE-X 1426632 1427033 128 + . . scaffold337 TRF Tandem_Repeat 1429052 1429107 103 + . . scaffold337 GLEAN mRNA 1429619 1434070 0.987638 - . ID=CGI_10028113; scaffold337 GLEAN promoter 1434071 1435070 0.987638 - . ID=CGI_10028113; scaffold337 TRF Tandem_Repeat 1434622 1434661 73 + . . scaffold337 WUBlastX DNA_Harbinger 1434873 1435139 64 - . . scaffold337 WUBlastX DNA_Harbinger 1434960 1435157 88 - . . scaffold337 GLEAN mRNA 1436729 1446702 0.999958 - . ID=CGI_10028114; scaffold337 TRF Tandem_Repeat 1443907 1443937 62 + . . scaffold337 TRF Tandem_Repeat 1446248 1446301 108 + . . scaffold337 GLEAN promoter 1446703 1447702 0.999958 - . ID=CGI_10028114; scaffold337 GLEAN mRNA 1447301 1453370 0.811725 - . ID=CGI_10028115; scaffold337 GLEAN promoter 1452639 1453638 1 + . ID=CGI_10028116; scaffold337 GLEAN promoter 1453371 1454370 0.811725 - . ID=CGI_10028115; scaffold337 GLEAN mRNA 1453639 1456124 1 + . ID=CGI_10028116; scaffold337 TRF Tandem_Repeat 1456822 1457503 1130 + . . scaffold337 GLEAN mRNA 1459495 1459905 0.999984 - . ID=CGI_10028117; scaffold337 GLEAN promoter 1459906 1460905 0.999984 - . ID=CGI_10028117; scaffold337 TRF Tandem_Repeat 1463328 1463739 148 + . . scaffold337 TRF Tandem_Repeat 1463809 1463900 61 + . . scaffold337 TRF Tandem_Repeat 1463922 1464251 89 + . . scaffold337 TRF Tandem_Repeat 1463947 1464167 95 + . . scaffold337 TRF Tandem_Repeat 1464021 1464139 72 + . . scaffold337 TRF Tandem_Repeat 1464034 1464099 73 + . . scaffold337 TRF Tandem_Repeat 1466476 1466520 90 + . . scaffold337 GLEAN mRNA 1466622 1470429 0.999973 - . ID=CGI_10028118; scaffold337 GLEAN promoter 1470430 1471429 0.999973 - . ID=CGI_10028118; scaffold337 GLEAN mRNA 1471928 1488134 0.608962 - . ID=CGI_10028119; scaffold337 GLEAN promoter 1482591 1483590 0.740205 + . ID=CGI_10028120; scaffold337 GLEAN mRNA 1483591 1485192 0.740205 + . ID=CGI_10028120; scaffold337 WUBlastX LTR_Pao 1484005 1484427 92 + . . scaffold337 TRF Tandem_Repeat 1486998 1487022 50 + . . scaffold337 GLEAN promoter 1488135 1489134 0.608962 - . ID=CGI_10028119; scaffold337 GLEAN mRNA 1491073 1498368 0.999996 - . ID=CGI_10028121; scaffold337 TRF Tandem_Repeat 1497907 1497959 106 + . . scaffold337 GLEAN promoter 1498369 1499368 0.999996 - . ID=CGI_10028121; scaffold337 TRF Tandem_Repeat 1501457 1501488 64 + . . scaffold337 WUBlastX LINE_RTE-X 1503642 1504649 64 - . . scaffold337 WUBlastX LINE_RTE-X 1503663 1503962 78 - . . scaffold337 WUBlastX LINE_RTE-X 1503666 1504904 57 - . . scaffold337 WUBlastX LINE_RTE-X 1504651 1505001 48 - . . scaffold337 WUBlastX LINE_RTE-X 1504994 1505503 73 - . . scaffold337 GLEAN promoter 1505050 1506049 0.999676 + . ID=CGI_10028122; scaffold337 WUBlastX LINE_RTE-X 1505078 1505503 78 - . . scaffold337 WUBlastX LINE_RTE-X 1505489 1505860 61 - . . scaffold337 GLEAN mRNA 1506050 1511052 0.999676 + . ID=CGI_10028122; scaffold337 GLEAN mRNA 1511925 1515258 0.999572 - . ID=CGI_10028123; scaffold337 GLEAN promoter 1515259 1516258 0.999572 - . ID=CGI_10028123; scaffold337 GLEAN promoter 1516218 1517217 1 + . ID=CGI_10028124; scaffold337 GLEAN mRNA 1517218 1519914 1 + . ID=CGI_10028124; scaffold337 TRF Tandem_Repeat 1521455 1521493 51 + . . scaffold337 GLEAN mRNA 1526526 1552275 0.999415 - . ID=CGI_10028125; scaffold337 TRF Tandem_Repeat 1528039 1528234 293 + . . scaffold337 TRF Tandem_Repeat 1534096 1534725 761 + . . scaffold337 TRF Tandem_Repeat 1534730 1534780 57 + . . scaffold337 TRF Tandem_Repeat 1534730 1534767 58 + . . scaffold337 TRF Tandem_Repeat 1537753 1538370 1128 + . . scaffold337 TRF Tandem_Repeat 1537753 1538677 1608 + . . scaffold337 TRF Tandem_Repeat 1538369 1538677 575 + . . scaffold337 GLEAN promoter 1551520 1552519 0.999676 + . ID=CGI_10028126; scaffold337 GLEAN promoter 1552276 1553275 0.999415 - . ID=CGI_10028125; scaffold337 GLEAN mRNA 1552520 1556015 0.999676 + . ID=CGI_10028126; scaffold337 TRF Tandem_Repeat 1559321 1559416 165 + . . scaffold337 GLEAN mRNA 1560593 1561735 1 - . ID=CGI_10028127; scaffold337 GLEAN promoter 1561736 1562735 1 - . ID=CGI_10028127; scaffold337 GLEAN promoter 1562115 1563114 0.999878 + . ID=CGI_10028128; scaffold337 GLEAN mRNA 1563115 1569214 0.999878 + . ID=CGI_10028128; scaffold337 GLEAN mRNA 1568342 1569103 0.6496 - . ID=CGI_10028129; scaffold337 GLEAN promoter 1569104 1570103 0.6496 - . ID=CGI_10028129; scaffold337 TRF Tandem_Repeat 1575744 1575851 216 + . . scaffold337 WUBlastX LINE_CR1-L2 1578676 1579086 137 - . . scaffold337 TRF Tandem_Repeat 1580870 1580995 189 + . . scaffold337 TRF Tandem_Repeat 1581479 1581876 780 + . . scaffold337 WUBlastX LINE_CR1-L2 1599958 1600368 137 - . . scaffold337 GLEAN promoter 1605899 1606898 1 + . ID=CGI_10028130; scaffold337 GLEAN mRNA 1606899 1608569 1 + . ID=CGI_10028130; scaffold337 TRF Tandem_Repeat 1609512 1609639 115 + . . scaffold337 WUBlastX LINE_DRE 1637912 1638310 40 + . . scaffold337 WUBlastX LINE_L1-Tx1 1638035 1638316 241 + . . scaffold33704 TRF Tandem_Repeat 1758 1953 374 + . . scaffold33704 WUBlastX DNA_Maverick 3891 4385 124 + . . scaffold33704 WUBlastX DNA_Maverick 3981 4406 136 + . . scaffold33704 WUBlastX DNA_Maverick 4539 5189 128 + . . scaffold33704 GLEAN promoter 8816 9815 0.999833 + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 9019 9564 294 + . . scaffold33704 WUBlastX LTR_DIRS 9578 9766 84 + . . scaffold33704 WUBlastX LTR_DIRS 9783 10508 579 + . . scaffold33704 GLEAN mRNA 9816 10809 0.999833 + . ID=CGI_10001119; scaffold33704 WUBlastX LTR_DIRS 10507 10806 236 + . . scaffold33704 WUBlastX DNA_PiggyBac 12174 12641 239 + . . scaffold33724 GLEAN promoter 518 1517 0.969602 + . ID=CGI_10001124; scaffold33724 GLEAN mRNA 1518 14940 0.969602 + . ID=CGI_10001124; scaffold33724 WUBlastX DNA_Harbinger 13745 13903 66 + . . scaffold33732 GLEAN promoter 1832 2831 0.999998 + . ID=CGI_10001121; scaffold33732 GLEAN mRNA 2832 4019 0.999998 + . ID=CGI_10001121; scaffold33732 GLEAN mRNA 4625 5350 0.481462 - . ID=CGI_10001122; scaffold33732 GLEAN promoter 5351 6350 0.481462 - . ID=CGI_10001122; scaffold33732 TRF Tandem_Repeat 8191 8229 78 + . . scaffold33732 WUBlastX LTR_DIRS 8528 8878 87 + . . scaffold33742 GLEAN mRNA 72 6256 0.999547 - . ID=CGI_10001126; scaffold33742 GLEAN promoter 6257 7256 0.999547 - . ID=CGI_10001126; scaffold33742 GLEAN mRNA 6614 15153 0.999547 - . ID=CGI_10001127; scaffold33742 GLEAN promoter 15154 15342 0.999547 - . ID=CGI_10001127; scaffold338 GLEAN promoter 5470 6469 0.934772 + . ID=CGI_10011182; scaffold338 TRF Tandem_Repeat 6275 6315 82 + . . scaffold338 GLEAN mRNA 6470 11078 0.934772 + . ID=CGI_10011182; scaffold338 GLEAN promoter 15760 16759 0.882466 + . ID=CGI_10011183; scaffold338 GLEAN mRNA 16760 19147 0.882466 + . ID=CGI_10011183; scaffold338 TRF Tandem_Repeat 36041 36065 50 + . . scaffold338 TRF Tandem_Repeat 42251 42299 98 + . . scaffold338 GLEAN promoter 46890 47889 0.70241 + . ID=CGI_10011184; scaffold338 GLEAN mRNA 47890 56497 0.70241 + . ID=CGI_10011184; scaffold338 WUBlastX LINE_L2 50585 51085 65 - . . scaffold338 WUBlastX LINE_CR1-L2 50657 51028 83 - . . scaffold338 WUBlastX LINE_CR1-L2 51028 51108 62 - . . scaffold338 WUBlastX LINE_L2 51111 51200 21 - . . scaffold338 TRF Tandem_Repeat 51290 51320 53 + . . scaffold338 WUBlastX LINE_L2 51525 51881 88 - . . scaffold338 WUBlastX LINE_L2 51845 52501 375 - . . scaffold338 WUBlastX LINE_CR1 52489 52533 24 - . . scaffold338 WUBlastX LINE_L2 52519 52773 84 - . . scaffold338 TRF Tandem_Repeat 54387 54461 53 + . . scaffold338 TRF Tandem_Repeat 54415 54469 110 + . . scaffold338 WUBlastX LINE_L1-Tx1 57732 57875 65 + . . scaffold338 WUBlastX LINE_L1-Tx1 57881 58051 24 + . . scaffold338 TRF Tandem_Repeat 58104 58136 66 + . . scaffold338 WUBlastX DNA_IS4EU 62145 62303 28 - . . scaffold338 WUBlastX DNA_IS4EU 62523 63335 36 - . . scaffold338 WUBlastX DNA_Kolobok-IS4 62535 63089 64 - . . scaffold338 WUBlastX DNA_IS4EU 62538 63224 56 - . . scaffold338 TRF Tandem_Repeat 63982 64099 157 + . . scaffold338 TRF Tandem_Repeat 63982 64099 168 + . . scaffold338 TRF Tandem_Repeat 72163 72205 86 + . . scaffold338 WUBlastX DNA_Helitron 76796 81577 2805 - . . scaffold338 WUBlastX RC_Helitron 81281 82099 469 - . . scaffold338 WUBlastX RC_Helitron 82093 83376 258 - . . scaffold338 WUBlastX DNA_Helitron 82726 84006 268 - . . scaffold338 WUBlastX RC_Helitron 83368 84138 95 - . . scaffold338 WUBlastX RC_Helitron 83455 84279 50 - . . scaffold338 TRF Tandem_Repeat 86411 87149 789 + . . scaffold338 TRF Tandem_Repeat 95025 95065 82 + . . scaffold338 TRF Tandem_Repeat 100169 100199 62 + . . scaffold338 GLEAN promoter 102470 103469 0.99998 + . ID=CGI_10011186; scaffold338 GLEAN mRNA 103470 103901 0.99998 + . ID=CGI_10011186; scaffold338 WUBlastX LINE_L1 155365 155448 36 - . . scaffold338 WUBlastX LINE_L1 155386 155457 45 - . . scaffold338 WUBlastX LINE_L1-Tx1 155401 155916 72 - . . scaffold338 WUBlastX LINE_L1 155468 155647 75 - . . scaffold338 WUBlastX LINE_L1 155498 155635 82 - . . scaffold338 WUBlastX LINE_L1 155501 155716 80 - . . scaffold338 WUBlastX LINE_L1 155776 155985 23 - . . scaffold338 TRF Tandem_Repeat 157020 157050 62 + . . scaffold338 WUBlastX LINE_L1-Tx1 162039 162647 148 - . . scaffold338 WUBlastX LINE_L1-Tx1 163324 163422 21 - . . scaffold338 WUBlastX DNA_Harbinger 177863 178414 412 - . . scaffold338 WUBlastX DNA_Harbinger 179010 179204 101 - . . scaffold338 WUBlastX DNA_Harbinger 179058 179249 164 - . . scaffold338 WUBlastX DNA_Harbinger 179261 179449 88 - . . scaffold338 WUBlastX DNA_Harbinger 179261 179383 92 - . . scaffold338 WUBlastX DNA_Harbinger 179498 179563 29 - . . scaffold338 WUBlastX DNA_Harbinger 179569 179814 41 - . . scaffold338 GLEAN promoter 180788 181787 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 180957 181058 177 + . . scaffold338 GLEAN mRNA 181788 221016 0.266982 + . ID=CGI_10011187; scaffold338 TRF Tandem_Repeat 206155 206633 379 + . . scaffold338 TRF Tandem_Repeat 206239 206630 385 + . . scaffold338 TRF Tandem_Repeat 207456 207804 148 + . . scaffold338 TRF Tandem_Repeat 207464 207807 545 + . . scaffold338 TRF Tandem_Repeat 207504 207807 216 + . . scaffold338 TRF Tandem_Repeat 208407 208447 82 + . . scaffold338 TRF Tandem_Repeat 208708 208790 139 + . . scaffold338 TRF Tandem_Repeat 208858 208908 102 + . . scaffold338 TRF Tandem_Repeat 211838 211867 53 + . . scaffold338 TRF Tandem_Repeat 213173 213225 106 + . . scaffold338 TRF Tandem_Repeat 213226 213307 51 + . . scaffold338 TRF Tandem_Repeat 213227 213345 62 + . . scaffold338 TRF Tandem_Repeat 213238 213344 71 + . . scaffold338 TRF Tandem_Repeat 213239 213314 68 + . . scaffold338 TRF Tandem_Repeat 215329 215514 126 + . . scaffold338 GLEAN promoter 224763 225762 1 + . ID=CGI_10011188; scaffold338 GLEAN mRNA 225763 251936 1 + . ID=CGI_10011188; scaffold338 WUBlastX LINE_RTE-X 226235 226450 52 - . . scaffold338 WUBlastX LINE_RTE-X 226313 226465 56 - . . scaffold338 WUBlastX LINE_RTE-X 226334 226462 65 - . . scaffold338 TRF Tandem_Repeat 226868 228618 2336 + . . scaffold338 TRF Tandem_Repeat 237721 237787 89 + . . scaffold338 TRF Tandem_Repeat 243001 243042 75 + . . scaffold338 TRF Tandem_Repeat 246005 246038 68 + . . scaffold338 TRF Tandem_Repeat 247749 247984 210 + . . scaffold338 WUBlastX LINE_L2 254221 254787 42 + . . scaffold338 WUBlastX LINE_RTE-X 254323 255909 517 + . . scaffold338 WUBlastX LINE_RTE-X 257127 257471 85 + . . scaffold338 GLEAN promoter 257409 258408 0.999999 + . ID=CGI_10011189; scaffold338 TRF Tandem_Repeat 257644 257678 52 + . . scaffold338 GLEAN promoter 258329 259328 0.557893 + . ID=CGI_10011190; scaffold338 WUBlastX DNA_Academ 258409 258930 121 + . . scaffold338 GLEAN mRNA 258409 258933 0.999999 + . ID=CGI_10011189; scaffold338 WUBlastX DNA_Academ 258933 259820 434 + . . scaffold338 GLEAN mRNA 259329 259880 0.557893 + . ID=CGI_10011190; scaffold338 TRF Tandem_Repeat 266254 266329 143 + . . scaffold338 TRF Tandem_Repeat 268528 268613 163 + . . scaffold338 TRF Tandem_Repeat 280127 280169 56 + . . scaffold33806 TRF Tandem_Repeat 122 213 116 + . . scaffold33806 TRF Tandem_Repeat 290 428 154 + . . scaffold33806 TRF Tandem_Repeat 474 571 90 + . . scaffold33806 WUBlastX LINE_RTE-X 1899 2375 73 + . . scaffold33806 WUBlastX LINE_RTE-X 1980 2405 152 + . . scaffold33806 TRF Tandem_Repeat 4212 4271 102 + . . scaffold33806 TRF Tandem_Repeat 8253 8344 104 + . . scaffold33806 TRF Tandem_Repeat 8254 8335 103 + . . scaffold33806 TRF Tandem_Repeat 11595 11631 56 + . . scaffold33820 WUBlastX LINE_L1 3 251 121 - . . scaffold33820 WUBlastX LINE_L1 54 995 310 - . . scaffold33820 WUBlastX DNA_Sola 8486 8917 59 + . . scaffold33820 TRF Tandem_Repeat 9800 9858 90 + . . scaffold33822 GLEAN promoter 1 730 0.999999 + . ID=CGI_10001136; scaffold33822 GLEAN mRNA 731 11747 0.999999 + . ID=CGI_10001136; scaffold33832 WUBlastX DNA_IS4EU 49 174 37 - . . scaffold33832 WUBlastX DNA_P 918 1376 23 - . . scaffold33832 WUBlastX DNA_P 1011 1376 48 - . . scaffold33832 WUBlastX DNA_IS4EU 1080 1376 78 - . . scaffold33832 WUBlastX DNA_P 1125 1364 83 - . . scaffold33832 WUBlastX LTR_Ngaro 3182 4390 336 + . . scaffold33832 WUBlastX LTR_Ngaro 3851 4441 387 + . . scaffold33832 WUBlastX LTR_Ngaro 4980 5102 50 + . . scaffold33832 WUBlastX LTR_Ngaro 5072 5407 101 + . . scaffold33832 TRF Tandem_Repeat 5831 6008 80 + . . scaffold33832 TRF Tandem_Repeat 6663 6692 51 + . . scaffold33832 TRF Tandem_Repeat 7082 7117 63 + . . scaffold33832 TRF Tandem_Repeat 7233 7285 97 + . . scaffold33832 GLEAN promoter 8135 9134 0.671758 + . ID=CGI_10001153; scaffold33832 GLEAN mRNA 9135 11752 0.671758 + . ID=CGI_10001153; scaffold33832 GLEAN promoter 11785 12784 0.717777 + . ID=CGI_10001154; scaffold33832 WUBlastX DNA_Harbinger 12758 13150 145 + . . scaffold33832 GLEAN mRNA 12785 13183 0.717777 + . ID=CGI_10001154; scaffold33832 GLEAN promoter 13624 14623 0.717777 + . ID=CGI_10001155; scaffold33832 TRF Tandem_Repeat 13687 13741 69 + . . scaffold33832 TRF Tandem_Repeat 13976 14011 72 + . . scaffold33832 GLEAN mRNA 14624 15580 0.717777 + . ID=CGI_10001155; scaffold33832 TRF Tandem_Repeat 14875 14925 68 + . . scaffold33832 TRF Tandem_Repeat 15098 15203 128 + . . scaffold33840 GLEAN mRNA 1130 4259 0.99967 - . ID=CGI_10001135; scaffold33840 GLEAN promoter 4260 5259 0.99967 - . ID=CGI_10001135; scaffold33840 WUBlastX LINE_L1-Tx1 6912 7154 33 + . . scaffold33840 WUBlastX LINE_L2 7184 7642 158 + . . scaffold33840 WUBlastX LINE_L1 7256 7645 251 + . . scaffold33840 WUBlastX LINE_L1-Tx1 7262 7741 149 + . . scaffold33840 WUBlastX LINE_RTE-X 7817 8344 102 + . . scaffold33840 WUBlastX LINE_RTE-X 7904 8338 155 + . . scaffold33840 WUBlastX LINE_RTE-X 9764 12448 991 + . . scaffold33840 WUBlastX LINE_RTE-X 11822 12571 93 + . . scaffold33842 TRF Tandem_Repeat 5373 5414 66 + . . scaffold33842 WUBlastX LINE_L1-Tx1 7652 8116 100 - . . scaffold33842 WUBlastX LINE_L1-Tx1 7733 8128 105 - . . scaffold33842 WUBlastX LINE_L1-Tx1 8131 8895 200 - . . scaffold33842 WUBlastX LINE_L1 8695 9159 20 - . . scaffold33842 WUBlastX LINE_L1 9007 9186 56 - . . scaffold33842 WUBlastX LINE_L1-Tx1 9013 9162 64 - . . scaffold33842 WUBlastX LINE_L1-Tx1 9013 9231 42 - . . scaffold33842 WUBlastX LINE_L1-Tx1 9532 9657 24 - . . scaffold33846 TRF Tandem_Repeat 6248 6317 117 + . . scaffold33846 WUBlastX LINE_L1 13255 14064 129 - . . scaffold33848 GLEAN mRNA 1332 3914 0.754735 - . ID=CGI_10001152; scaffold33848 GLEAN promoter 3915 4914 0.754735 - . ID=CGI_10001152; scaffold33848 WUBlastX DNA_Kolobok 13840 13935 78 - . . scaffold33848 WUBlastX DNA_Kolobok 14028 14234 102 - . . scaffold33876 WUBlastX LINE_Penelope 6537 6926 39 + . . scaffold33876 WUBlastX DNA_Maverick 9012 9488 264 - . . scaffold33876 WUBlastX DNA_Maverick 9491 9832 189 - . . scaffold33876 WUBlastX DNA_Maverick 9854 9991 23 - . . scaffold33876 WUBlastX DNA_Maverick 10020 10412 250 - . . scaffold33876 TRF Tandem_Repeat 13243 13318 152 + . . scaffold339 TRF Tandem_Repeat 91 117 54 + . . scaffold339 TRF Tandem_Repeat 3048 3138 161 + . . scaffold339 GLEAN promoter 5150 6149 0.98867 + . ID=CGI_10008797; scaffold339 GLEAN mRNA 6150 7626 0.98867 + . ID=CGI_10008797; scaffold339 WUBlastX LTR_Pao 11747 12061 154 - . . scaffold339 WUBlastX LTR_Pao 12901 13098 35 - . . scaffold339 WUBlastX LTR_Pao 12901 13017 44 - . . scaffold339 WUBlastX LTR_Pao 12937 13017 48 - . . scaffold339 WUBlastX DNA_Kolobok-IS4 14641 15081 116 + . . scaffold339 WUBlastX DNA_IS4EU 15080 15214 77 + . . scaffold339 WUBlastX DNA_IS4EU 15216 15356 40 + . . scaffold339 WUBlastX DNA_IS4EU 15243 15443 63 + . . scaffold339 WUBlastX DNA_Kolobok-IS4 15751 16026 83 - . . scaffold339 WUBlastX DNA_IS4EU 17373 17726 85 - . . scaffold339 WUBlastX LTR_Gypsy 25229 25405 26 - . . scaffold339 WUBlastX LTR_Gypsy 25271 25405 45 - . . scaffold339 WUBlastX LTR_Gypsy 25297 25731 126 - . . scaffold339 WUBlastX LTR_Gypsy-Cigr 25369 26817 528 - . . scaffold339 WUBlastX LTR_Gypsy 26680 26865 43 - . . scaffold339 WUBlastX LTR_Gypsy 26855 27820 381 - . . scaffold339 WUBlastX LTR_Gypsy-Cigr 26858 27433 457 - . . scaffold339 WUBlastX LTR_Gypsy 27844 28170 46 - . . scaffold339 WUBlastX LTR_Gypsy 27925 28170 74 - . . scaffold339 WUBlastX DNA_Harbinger 30105 30215 94 - . . scaffold339 WUBlastX DNA_Harbinger 30536 30781 54 - . . scaffold339 WUBlastX DNA_Harbinger 30551 30883 41 - . . scaffold339 WUBlastX LINE_L2 38402 39016 155 - . . scaffold339 WUBlastX LINE_L2 38768 39145 34 - . . scaffold339 TRF Tandem_Repeat 45871 45918 96 + . . scaffold339 GLEAN mRNA 50290 52811 0.445268 - . ID=CGI_10008798; scaffold339 TRF Tandem_Repeat 50997 51032 72 + . . scaffold339 GLEAN promoter 52812 53811 0.445268 - . ID=CGI_10008798; scaffold339 TRF Tandem_Repeat 58614 58670 114 + . . scaffold339 TRF Tandem_Repeat 62293 62441 246 + . . scaffold339 GLEAN promoter 63466 64465 1 + . ID=CGI_10008799; scaffold339 GLEAN mRNA 64466 65746 1 + . ID=CGI_10008799; scaffold339 TRF Tandem_Repeat 69382 69441 111 + . . scaffold339 GLEAN mRNA 79500 92447 0.999948 - . ID=CGI_10008800; scaffold339 TRF Tandem_Repeat 83712 83931 298 + . . scaffold339 TRF Tandem_Repeat 83722 83908 169 + . . scaffold339 TRF Tandem_Repeat 86775 87744 1645 + . . scaffold339 TRF Tandem_Repeat 88458 88504 78 + . . scaffold339 GLEAN promoter 91859 92858 0.998497 + . ID=CGI_10008801; scaffold339 GLEAN promoter 92448 93447 0.999948 - . ID=CGI_10008800; scaffold339 GLEAN mRNA 92859 99737 0.998497 + . ID=CGI_10008801; scaffold339 TRF Tandem_Repeat 97478 97521 88 + . . scaffold339 TRF Tandem_Repeat 103669 103728 75 + . . scaffold339 TRF Tandem_Repeat 107135 107166 64 + . . scaffold339 TRF Tandem_Repeat 107658 107710 70 + . . scaffold339 TRF Tandem_Repeat 110186 110219 68 + . . scaffold339 TRF Tandem_Repeat 117827 117905 151 + . . scaffold339 WUBlastX LTR_Gypsy 120257 120778 26 - . . scaffold339 WUBlastX LTR_Gypsy 120464 120772 28 - . . scaffold339 WUBlastX LTR_Gypsy 120581 120814 31 - . . scaffold339 TRF Tandem_Repeat 129665 129717 106 + . . scaffold339 TRF Tandem_Repeat 135463 135523 122 + . . scaffold339 GLEAN mRNA 141573 143546 0.999365 - . ID=CGI_10008802; scaffold339 GLEAN promoter 143547 144546 0.999365 - . ID=CGI_10008802; scaffold339 TRF Tandem_Repeat 145163 145259 121 + . . scaffold339 GLEAN promoter 145286 146285 0.999828 + . ID=CGI_10008803; scaffold339 GLEAN mRNA 146286 166002 0.999828 + . ID=CGI_10008803; scaffold339 TRF Tandem_Repeat 150425 151437 1256 + . . scaffold339 TRF Tandem_Repeat 151775 152432 840 + . . scaffold339 TRF Tandem_Repeat 151775 152432 838 + . . scaffold339 TRF Tandem_Repeat 152739 153574 1169 + . . scaffold339 WUBlastX LINE_RTE-X 155737 155889 50 - . . scaffold339 WUBlastX LINE_RTE-X 155957 156292 48 - . . scaffold339 WUBlastX LINE_L1 173970 175064 193 + . . scaffold339 WUBlastX LINE_L1-Tx1 174153 175106 488 + . . scaffold339 WUBlastX LINE_L1-Tx1 175105 176325 770 + . . scaffold339 WUBlastX LINE_L1-Tx1 176316 177518 243 + . . scaffold339 TRF Tandem_Repeat 179521 179563 86 + . . scaffold339 TRF Tandem_Repeat 185553 185583 53 + . . scaffold339 TRF Tandem_Repeat 217480 217961 680 + . . scaffold33902 GLEAN mRNA 2736 7691 0.999066 - . ID=CGI_10001165; scaffold33902 GLEAN promoter 7692 8691 0.999066 - . ID=CGI_10001165; scaffold33904 WUBlastX LINE_RTE-X 4362 4922 109 - . . scaffold33904 WUBlastX LINE_RTE-X 4455 4922 136 - . . scaffold33904 WUBlastX LINE_RTE-X 4539 4922 172 - . . scaffold33904 WUBlastX LINE_RTE-X 6209 6553 64 - . . scaffold33904 WUBlastX LINE_RTE-X 6640 7866 205 - . . scaffold33904 WUBlastX LINE_CR1 7345 8016 50 - . . scaffold33904 TRF Tandem_Repeat 11421 12181 704 + . . scaffold33904 TRF Tandem_Repeat 13746 13779 59 + . . scaffold33910 GLEAN mRNA 385 2839 1 - . ID=CGI_10001162; scaffold33910 GLEAN promoter 2840 3839 1 - . ID=CGI_10001162; scaffold33910 GLEAN promoter 4706 5705 1 + . ID=CGI_10001163; scaffold33910 GLEAN mRNA 5706 10464 1 + . ID=CGI_10001163; scaffold33912 GLEAN mRNA 1379 14477 0.997601 - . ID=CGI_10001169; scaffold33912 GLEAN promoter 14478 15477 0.997601 - . ID=CGI_10001169; scaffold33922 TRF Tandem_Repeat 5123 5178 62 + . . scaffold33922 TRF Tandem_Repeat 5124 5178 78 + . . scaffold33922 GLEAN mRNA 5793 7574 0.69447 - . ID=CGI_10001167; scaffold33922 WUBlastX LINE_L2 6312 7148 29 - . . scaffold33922 GLEAN promoter 7575 8574 0.69447 - . ID=CGI_10001167; scaffold33924 GLEAN promoter 1 261 0.999068 + . ID=CGI_10001172; scaffold33924 GLEAN mRNA 25 225 0.999372 - . ID=CGI_10001171; scaffold33924 GLEAN promoter 226 1225 0.999372 - . ID=CGI_10001171; scaffold33924 GLEAN mRNA 262 597 0.999068 + . ID=CGI_10001172; scaffold33924 WUBlastX DNA_MuDR 304 585 48 + . . scaffold33924 WUBlastX DNA_MuDR 319 549 48 + . . scaffold33924 TRF Tandem_Repeat 3938 4131 83 + . . scaffold33934 TRF Tandem_Repeat 229 368 122 + . . scaffold33934 WUBlastX LINE_L1-Tx1 5809 7299 101 - . . scaffold33934 WUBlastX LINE_L1 7625 7696 25 - . . scaffold33934 TRF Tandem_Repeat 7724 7757 68 + . . scaffold33934 WUBlastX LINE_L1-Tx1 7805 9076 748 - . . scaffold33934 WUBlastX LINE_L1-Tx1 9060 9641 419 - . . scaffold33934 WUBlastX LTR_Gypsy-Cigr 9749 10879 96 - . . scaffold33934 WUBlastX LTR_Gypsy 10121 10864 116 - . . scaffold33934 WUBlastX LTR_Gypsy 10187 11008 47 - . . scaffold33934 WUBlastX LTR_Gypsy-Cigr 10262 10879 131 - . . scaffold33958 TRF Tandem_Repeat 712 736 50 + . . scaffold33958 TRF Tandem_Repeat 736 776 82 + . . scaffold33958 WUBlastX LTR_Gypsy 4425 7847 1856 - . . scaffold33958 WUBlastX LTR_Gypsy 4590 7376 2384 - . . scaffold33958 WUBlastX LTR_Gypsy 7635 7943 21 - . . scaffold33958 WUBlastX LTR_Gypsy 7650 7895 30 - . . scaffold33958 WUBlastX LTR_Gypsy 8812 9396 94 + . . scaffold33958 WUBlastX LTR_Gypsy 8962 9372 119 + . . scaffold33958 WUBlastX LTR_Gypsy 9367 13812 690 + . . scaffold33958 WUBlastX LTR_Gypsy-Cigr 9907 13569 1612 + . . scaffold33958 WUBlastX LTR_Gypsy 13693 13860 58 + . . scaffold33960 GLEAN mRNA 22 11365 0.999991 - . ID=CGI_10001173; scaffold33960 GLEAN promoter 11366 12365 0.999991 - . ID=CGI_10001173; scaffold33960 GLEAN mRNA 12358 15755 0.995709 - . ID=CGI_10001174; scaffold33960 GLEAN promoter 15756 16402 0.995709 - . ID=CGI_10001174; scaffold33980 GLEAN promoter 1151 2150 0.664854 + . ID=CGI_10001168; scaffold33980 TRF Tandem_Repeat 1943 1981 51 + . . scaffold33980 GLEAN mRNA 2151 15835 0.664854 + . ID=CGI_10001168; scaffold33980 WUBlastX DNA_hAT-Tip100 2800 3525 20 + . . scaffold33980 WUBlastX DNA_hAT-Tip100 2800 2979 47 + . . scaffold33980 WUBlastX DNA_hAT-Tip100 3187 3531 172 + . . scaffold33980 WUBlastX DNA_hAT-Tip100 3548 3910 94 + . . scaffold33980 WUBlastX DNA_hAT-Tip100 3883 4992 242 + . . scaffold33980 WUBlastX RC_Helitron 7101 7244 44 + . . scaffold33980 WUBlastX LTR_Ngaro 9421 9690 108 - . . scaffold33980 WUBlastX LTR_Gypsy 9782 10102 27 - . . scaffold33980 WUBlastX LTR_Ngaro 9845 10714 314 - . . scaffold33980 WUBlastX LTR_Ngaro 10702 11067 257 - . . scaffold33992 GLEAN promoter 2191 3190 0.883083 + . ID=CGI_10001175; scaffold33992 GLEAN mRNA 3191 4096 0.883083 + . ID=CGI_10001175; scaffold34 GLEAN mRNA 2457 8666 0.999992 - . ID=CGI_10015924; scaffold34 GLEAN promoter 8667 9666 0.999992 - . ID=CGI_10015924; scaffold34 GLEAN promoter 14830 15829 0.99993 + . ID=CGI_10015925; scaffold34 GLEAN mRNA 15830 20519 0.99993 + . ID=CGI_10015925; scaffold34 TRF Tandem_Repeat 16148 16201 76 + . . scaffold34 TRF Tandem_Repeat 16153 16198 76 + . . scaffold34 TRF Tandem_Repeat 16368 17207 1247 + . . scaffold34 TRF Tandem_Repeat 16371 17115 1249 + . . scaffold34 GLEAN mRNA 22566 35641 0.889853 - . ID=CGI_10015926; scaffold34 TRF Tandem_Repeat 34804 34860 114 + . . scaffold34 GLEAN promoter 35642 36641 0.889853 - . ID=CGI_10015926; scaffold34 GLEAN mRNA 37291 44153 0.999366 - . ID=CGI_10015927; scaffold34 GLEAN promoter 44154 45153 0.999366 - . ID=CGI_10015927; scaffold34 TRF Tandem_Repeat 46623 46683 122 + . . scaffold34 WUBlastX LINE_RTE-X 53126 53602 44 + . . scaffold34 WUBlastX LINE_RTE-X 53306 53593 100 + . . scaffold34 WUBlastX LINE_RTE-X 53363 53635 91 + . . scaffold34 WUBlastX LINE_RTE-X 53393 53701 80 + . . scaffold34 WUBlastX LTR_Ngaro 56105 56221 44 - . . scaffold34 TRF Tandem_Repeat 58224 58257 50 + . . scaffold34 WUBlastX LINE_CR1 64210 64257 20 + . . scaffold34 WUBlastX LINE_I 64219 64362 43 + . . scaffold34 WUBlastX LINE_CR1 64397 64501 24 + . . scaffold34 WUBlastX LINE_CR1-L2 65177 65404 49 + . . scaffold34 WUBlastX LINE_L2 65279 65404 59 + . . scaffold34 WUBlastX LINE_L2 65319 65819 175 + . . scaffold34 WUBlastX LINE_L2 65379 65780 226 + . . scaffold34 WUBlastX LINE_L2 65785 66285 158 + . . scaffold34 WUBlastX LINE_L2 65890 66387 57 + . . scaffold34 TRF Tandem_Repeat 66759 66786 56 + . . scaffold34 TRF Tandem_Repeat 75595 75640 92 + . . scaffold34 WUBlastX LTR_Ngaro 78802 78972 75 - . . scaffold34 GLEAN promoter 79009 80008 0.738396 + . ID=CGI_10015928; scaffold34 GLEAN mRNA 80009 87721 0.738396 + . ID=CGI_10015928; scaffold34 TRF Tandem_Repeat 81224 81278 71 + . . scaffold34 TRF Tandem_Repeat 81224 81278 60 + . . scaffold34 GLEAN mRNA 84090 84899 0.990803 - . ID=CGI_10015929; scaffold34 WUBlastX LINE_L1 84588 84917 23 - . . scaffold34 GLEAN promoter 84900 85899 0.990803 - . ID=CGI_10015929; scaffold34 GLEAN promoter 87722 88721 0.942408 + . ID=CGI_10015930; scaffold34 GLEAN mRNA 88722 107323 0.942408 + . ID=CGI_10015930; scaffold34 TRF Tandem_Repeat 92377 92433 114 + . . scaffold34 WUBlastX LINE_L2 106523 106729 44 - . . scaffold34 GLEAN promoter 109695 110694 1 + . ID=CGI_10015931; scaffold34 GLEAN mRNA 110695 111633 1 + . ID=CGI_10015931; scaffold34 GLEAN promoter 113851 114850 1 + . ID=CGI_10015932; scaffold34 GLEAN mRNA 114851 116205 1 + . ID=CGI_10015932; scaffold34 GLEAN promoter 115609 116608 0.610298 + . ID=CGI_10015933; scaffold34 GLEAN mRNA 116609 118297 0.610298 + . ID=CGI_10015933; scaffold34 TRF Tandem_Repeat 119037 119064 56 + . . scaffold34 GLEAN promoter 119116 120115 1 + . ID=CGI_10015934; scaffold34 GLEAN mRNA 120116 121323 1 + . ID=CGI_10015934; scaffold34 TRF Tandem_Repeat 122727 122761 52 + . . scaffold34 TRF Tandem_Repeat 123435 123519 116 + . . scaffold34 TRF Tandem_Repeat 125423 125486 119 + . . scaffold34 WUBlastX LINE_L1 126150 126734 44 + . . scaffold34 WUBlastX LINE_L1 126252 126860 68 + . . scaffold34 WUBlastX LINE_CR1-L2 126330 126731 115 + . . scaffold34 WUBlastX LINE_L2 126432 126755 139 + . . scaffold34 TRF Tandem_Repeat 128376 128451 125 + . . scaffold34 TRF Tandem_Repeat 128787 128818 55 + . . scaffold34 GLEAN mRNA 129616 134561 0.999502 - . ID=CGI_10015935; scaffold34 GLEAN promoter 134562 135561 0.999502 - . ID=CGI_10015935; scaffold34 TRF Tandem_Repeat 137713 138051 310 + . . scaffold34 TRF Tandem_Repeat 137717 138050 235 + . . scaffold34 GLEAN mRNA 142700 143652 0.999867 - . ID=CGI_10015936; scaffold34 GLEAN promoter 143653 144652 0.999867 - . ID=CGI_10015936; scaffold34 TRF Tandem_Repeat 155952 156001 82 + . . scaffold34 TRF Tandem_Repeat 156149 156930 837 + . . scaffold34 WUBlastX LTR_Gypsy 166578 167237 57 + . . scaffold34 WUBlastX LTR_Gypsy 166710 167264 122 + . . scaffold34 WUBlastX LTR_Gypsy 166767 167399 47 + . . scaffold34 WUBlastX LINE_L2 168180 168926 344 + . . scaffold34 WUBlastX LINE_L1-Tx1 177184 177264 20 - . . scaffold34 GLEAN mRNA 185904 186485 0.835546 - . ID=CGI_10015937; scaffold34 GLEAN promoter 186486 187485 0.835546 - . ID=CGI_10015937; scaffold34 TRF Tandem_Repeat 192335 192382 87 + . . scaffold34 TRF Tandem_Repeat 193780 193838 59 + . . scaffold34 TRF Tandem_Repeat 193780 193842 55 + . . scaffold34 GLEAN mRNA 195296 198342 0.754675 - . ID=CGI_10015938; scaffold34 GLEAN promoter 198343 199342 0.754675 - . ID=CGI_10015938; scaffold34 GLEAN mRNA 199993 201966 0.999661 - . ID=CGI_10015939; scaffold34 GLEAN promoter 201967 202966 0.999661 - . ID=CGI_10015939; scaffold34 TRF Tandem_Repeat 220621 220666 92 + . . scaffold34 TRF Tandem_Repeat 224025 224075 86 + . . scaffold34 TRF Tandem_Repeat 225961 225996 72 + . . scaffold34 TRF Tandem_Repeat 226489 226540 104 + . . scaffold34 TRF Tandem_Repeat 226926 226956 62 + . . scaffold34 TRF Tandem_Repeat 229622 231210 1852 + . . scaffold34 TRF Tandem_Repeat 229622 231210 1885 + . . scaffold34 TRF Tandem_Repeat 230612 231286 562 + . . scaffold34 TRF Tandem_Repeat 232218 232280 56 + . . scaffold34 TRF Tandem_Repeat 240569 240603 52 + . . scaffold34 WUBlastX LINE_Penelope 241818 243734 397 - . . scaffold34 WUBlastX LINE_Penelope 242022 243626 521 - . . scaffold34 GLEAN mRNA 244079 244504 1 - . ID=CGI_10015940; scaffold34 GLEAN promoter 244505 245504 1 - . ID=CGI_10015940; scaffold34 TRF Tandem_Repeat 258293 258971 852 + . . scaffold34 GLEAN promoter 262209 263208 0.989205 + . ID=CGI_10015941; scaffold34 GLEAN mRNA 263209 266516 0.989205 + . ID=CGI_10015941; scaffold34 TRF Tandem_Repeat 267994 268028 70 + . . scaffold34 GLEAN promoter 268507 269506 0.995008 + . ID=CGI_10015942; scaffold34 GLEAN mRNA 269507 283088 0.995008 + . ID=CGI_10015942; scaffold34 TRF Tandem_Repeat 270795 270854 57 + . . scaffold34 TRF Tandem_Repeat 270795 270843 89 + . . scaffold34 TRF Tandem_Repeat 270797 270854 80 + . . scaffold34 TRF Tandem_Repeat 272977 274144 1425 + . . scaffold34 TRF Tandem_Repeat 272977 275430 1449 + . . scaffold34 TRF Tandem_Repeat 273740 276140 1131 + . . scaffold34 TRF Tandem_Repeat 276290 276373 50 + . . scaffold34 TRF Tandem_Repeat 276350 276441 53 + . . scaffold34 TRF Tandem_Repeat 284795 284836 50 + . . scaffold34 WUBlastX DNA_TcMar-Tc2 288976 290136 921 - . . scaffold34 GLEAN mRNA 290500 292814 0.678889 - . ID=CGI_10015943; scaffold34 WUBlastX DNA_IS4EU 290533 290751 94 - . . scaffold34 WUBlastX DNA_IS4EU 290723 291523 400 - . . scaffold34 WUBlastX DNA_IS4EU 292455 292814 62 - . . scaffold34 GLEAN promoter 292815 293814 0.678889 - . ID=CGI_10015943; scaffold34 TRF Tandem_Repeat 294679 295440 719 + . . scaffold34 WUBlastX LINE_Penelope 298080 298712 186 - . . scaffold34 TRF Tandem_Repeat 298918 298965 96 + . . scaffold34 TRF Tandem_Repeat 305801 306574 626 + . . scaffold34 TRF Tandem_Repeat 317213 317459 67 + . . scaffold34 TRF Tandem_Repeat 317232 317459 63 + . . scaffold34 WUBlastX LINE_L1-Tx1 354081 354332 51 + . . scaffold34 GLEAN promoter 359132 360131 1 + . ID=CGI_10015944; scaffold34 GLEAN mRNA 360132 360545 1 + . ID=CGI_10015944; scaffold34 GLEAN promoter 360205 361204 0.551846 + . ID=CGI_10015945; scaffold34 GLEAN mRNA 361205 370854 0.551846 + . ID=CGI_10015945; scaffold34 GLEAN mRNA 362470 363642 1 - . ID=CGI_10015946; scaffold34 GLEAN promoter 363643 364642 1 - . ID=CGI_10015946; scaffold34 GLEAN mRNA 364879 366355 0.758561 - . ID=CGI_10015947; scaffold34 GLEAN promoter 366356 367355 0.758561 - . ID=CGI_10015947; scaffold34 TRF Tandem_Repeat 368252 368388 204 + . . scaffold34 GLEAN promoter 371008 372007 1 + . ID=CGI_10015948; scaffold34 GLEAN mRNA 372008 387018 1 + . ID=CGI_10015948; scaffold34 GLEAN promoter 386113 387112 0.544755 + . ID=CGI_10015949; scaffold34 GLEAN mRNA 387113 390411 0.544755 + . ID=CGI_10015949; scaffold34 GLEAN mRNA 393262 394814 0.734569 - . ID=CGI_10015950; scaffold34 GLEAN promoter 394815 395814 0.734569 - . ID=CGI_10015950; scaffold34 GLEAN mRNA 397791 398367 0.999999 - . ID=CGI_10015951; scaffold34 GLEAN promoter 398368 399367 0.999999 - . ID=CGI_10015951; scaffold34 TRF Tandem_Repeat 401340 401391 77 + . . scaffold34 TRF Tandem_Repeat 401340 401400 68 + . . scaffold34 TRF Tandem_Repeat 405207 405245 78 + . . scaffold34 TRF Tandem_Repeat 430330 430404 143 + . . scaffold34 GLEAN mRNA 434652 436289 0.999999 - . ID=CGI_10015952; scaffold34 GLEAN promoter 436290 437289 0.999999 - . ID=CGI_10015952; scaffold34 TRF Tandem_Repeat 444533 444574 84 + . . scaffold34 TRF Tandem_Repeat 447269 447309 73 + . . scaffold34 GLEAN promoter 447389 448388 1 + . ID=CGI_10015953; scaffold34 GLEAN mRNA 448389 449066 1 + . ID=CGI_10015953; scaffold34 TRF Tandem_Repeat 450399 450448 100 + . . scaffold340 GLEAN mRNA 561 946 0.998556 - . ID=CGI_10011092; scaffold340 GLEAN promoter 947 1946 0.998556 - . ID=CGI_10011092; scaffold340 GLEAN mRNA 1037 14126 0.972254 - . ID=CGI_10011093; scaffold340 TRF Tandem_Repeat 1441 1486 92 + . . scaffold340 TRF Tandem_Repeat 11734 11773 80 + . . scaffold340 GLEAN promoter 14127 15126 0.972254 - . ID=CGI_10011093; scaffold340 GLEAN mRNA 15632 18791 0.989219 - . ID=CGI_10011094; scaffold340 GLEAN promoter 18792 19791 0.989219 - . ID=CGI_10011094; scaffold340 GLEAN mRNA 20237 53895 0.296118 - . ID=CGI_10011095; scaffold340 TRF Tandem_Repeat 40195 40238 72 + . . scaffold340 TRF Tandem_Repeat 51357 51396 80 + . . scaffold340 GLEAN promoter 53896 54895 0.296118 - . ID=CGI_10011095; scaffold340 GLEAN mRNA 54045 66450 0.999617 - . ID=CGI_10011096; scaffold340 TRF Tandem_Repeat 55632 55918 231 + . . scaffold340 GLEAN promoter 66451 67450 0.999617 - . ID=CGI_10011096; scaffold340 GLEAN promoter 72841 73840 1 + . ID=CGI_10011097; scaffold340 GLEAN mRNA 73841 81237 1 + . ID=CGI_10011097; scaffold340 TRF Tandem_Repeat 79436 79472 65 + . . scaffold340 TRF Tandem_Repeat 81438 81479 84 + . . scaffold340 GLEAN mRNA 82687 84504 0.998725 - . ID=CGI_10011098; scaffold340 GLEAN promoter 84505 85504 0.998725 - . ID=CGI_10011098; scaffold340 TRF Tandem_Repeat 99717 99742 52 + . . scaffold340 TRF Tandem_Repeat 142566 142975 313 + . . scaffold340 TRF Tandem_Repeat 142566 142983 379 + . . scaffold340 GLEAN mRNA 145168 157161 0.839591 - . ID=CGI_10011099; scaffold340 GLEAN promoter 157162 158161 0.839591 - . ID=CGI_10011099; scaffold340 GLEAN promoter 157243 158242 0.999964 + . ID=CGI_10011100; scaffold340 GLEAN mRNA 158243 158443 0.999964 + . ID=CGI_10011100; scaffold340 GLEAN promoter 160448 161447 0.999624 + . ID=CGI_10011101; scaffold340 GLEAN mRNA 161448 168776 0.999624 + . ID=CGI_10011101; scaffold340 TRF Tandem_Repeat 166665 167476 1270 + . . scaffold340 TRF Tandem_Repeat 175659 175700 84 + . . scaffold340 GLEAN promoter 176857 177856 0.999959 + . ID=CGI_10011102; scaffold340 GLEAN mRNA 177857 183676 0.999959 + . ID=CGI_10011102; scaffold340 TRF Tandem_Repeat 181779 181830 104 + . . scaffold340 GLEAN promoter 187953 188952 0.999998 + . ID=CGI_10011103; scaffold340 GLEAN mRNA 188953 190893 0.999998 + . ID=CGI_10011103; scaffold340 WUBlastX LINE_L1 189589 189957 22 + . . scaffold340 GLEAN mRNA 194357 197302 0.999362 - . ID=CGI_10011104; scaffold340 GLEAN promoter 197303 198302 0.999362 - . ID=CGI_10011104; scaffold340 GLEAN mRNA 200937 216275 0.359294 - . ID=CGI_10011105; scaffold340 GLEAN promoter 204481 205480 1 + . ID=CGI_10011106; scaffold340 GLEAN mRNA 205481 215029 1 + . ID=CGI_10011106; scaffold340 GLEAN promoter 216276 217275 0.359294 - . ID=CGI_10011105; scaffold340 WUBlastX DNA_IS4EU 217079 217495 180 + . . scaffold340 WUBlastX DNA_IS4EU 217890 218042 86 + . . scaffold340 WUBlastX DNA_IS4EU 217902 218030 109 + . . scaffold340 GLEAN mRNA 218224 224082 0.984022 - . ID=CGI_10011108; scaffold340 WUBlastX DNA_IS4EU 218538 219605 307 + . . scaffold340 GLEAN promoter 224083 225082 0.984022 - . ID=CGI_10011108; scaffold340 GLEAN mRNA 225193 235123 0.933865 - . ID=CGI_10011109; scaffold340 TRF Tandem_Repeat 230588 230673 91 + . . scaffold340 TRF Tandem_Repeat 230739 230958 219 + . . scaffold340 TRF Tandem_Repeat 230739 230931 237 + . . scaffold340 TRF Tandem_Repeat 230739 230959 173 + . . scaffold340 TRF Tandem_Repeat 230958 231094 125 + . . scaffold340 TRF Tandem_Repeat 233275 233311 74 + . . scaffold340 GLEAN promoter 235124 236123 0.933865 - . ID=CGI_10011109; scaffold340 GLEAN mRNA 237501 239533 1 - . ID=CGI_10011110; scaffold340 GLEAN promoter 239534 240533 1 - . ID=CGI_10011110; scaffold340 TRF Tandem_Repeat 240422 240467 92 + . . scaffold340 GLEAN mRNA 245521 251420 0.921179 - . ID=CGI_10011111; scaffold340 GLEAN promoter 248036 249035 0.918941 + . ID=CGI_10011112; scaffold340 GLEAN mRNA 249036 266015 0.918941 + . ID=CGI_10011112; scaffold340 GLEAN promoter 251421 252420 0.921179 - . ID=CGI_10011111; scaffold340 TRF Tandem_Repeat 253968 254633 926 + . . scaffold340 TRF Tandem_Repeat 256742 256818 136 + . . scaffold340 TRF Tandem_Repeat 273493 274592 1286 + . . scaffold34000 TRF Tandem_Repeat 3453 3694 249 + . . scaffold34000 TRF Tandem_Repeat 5900 6419 652 + . . scaffold34000 WUBlastX LINE_L2 6926 7864 266 - . . scaffold34000 WUBlastX LINE_L2 7190 7921 310 - . . scaffold34000 WUBlastX LINE_CR1-L2 7851 7952 37 - . . scaffold34000 WUBlastX LINE_L2 7860 7934 56 - . . scaffold34000 TRF Tandem_Repeat 8028 12173 3173 + . . scaffold34000 TRF Tandem_Repeat 8028 12181 2494 + . . scaffold34000 GLEAN mRNA 12601 12768 0.60755 - . ID=CGI_10001176; scaffold34000 GLEAN promoter 12769 13768 0.60755 - . ID=CGI_10001176; scaffold34000 TRF Tandem_Repeat 15559 16034 700 + . . scaffold34000 TRF Tandem_Repeat 16283 16323 82 + . . scaffold34008 GLEAN mRNA 1621 1992 0.999998 - . ID=CGI_10001178; scaffold34008 GLEAN promoter 1993 2992 0.999998 - . ID=CGI_10001178; scaffold34016 GLEAN mRNA 449 13407 0.445355 - . ID=CGI_10001181; scaffold34016 WUBlastX LINE_Penelope 3285 3821 100 + . . scaffold34016 WUBlastX LINE_Penelope 3294 3695 117 + . . scaffold34016 GLEAN promoter 3853 4852 0.770397 + . ID=CGI_10001182; scaffold34016 TRF Tandem_Repeat 4156 4187 64 + . . scaffold34016 GLEAN mRNA 4853 10192 0.770397 + . ID=CGI_10001182; scaffold34016 GLEAN promoter 13408 14407 0.445355 - . ID=CGI_10001181; scaffold34016 TRF Tandem_Repeat 14387 14438 95 + . . scaffold34018 GLEAN mRNA 120 15295 0.998586 - . ID=CGI_10001177; scaffold34018 GLEAN promoter 15296 16295 0.998586 - . ID=CGI_10001177; scaffold34026 GLEAN mRNA 6208 16650 0.99956 - . ID=CGI_10001188; scaffold34026 GLEAN promoter 16651 16705 0.99956 - . ID=CGI_10001188; scaffold34048 GLEAN promoter 2796 3795 0.528485 + . ID=CGI_10001184; scaffold34048 GLEAN mRNA 3796 4656 0.528485 + . ID=CGI_10001184; scaffold34048 GLEAN promoter 10643 11642 0.999984 + . ID=CGI_10001185; scaffold34048 GLEAN mRNA 11643 13049 0.999984 + . ID=CGI_10001185; scaffold34052 GLEAN promoter 1 837 0.65089 + . ID=CGI_10001189; scaffold34052 GLEAN mRNA 838 16407 0.65089 + . ID=CGI_10001189; scaffold34058 GLEAN mRNA 1152 2589 1 - . ID=CGI_10001186; scaffold34058 GLEAN promoter 2590 3589 1 - . ID=CGI_10001186; scaffold34058 GLEAN mRNA 7149 15880 0.9993 - . ID=CGI_10001187; scaffold34058 GLEAN promoter 15881 16675 0.9993 - . ID=CGI_10001187; scaffold34064 GLEAN promoter 3098 4097 0.999999 + . ID=CGI_10001192; scaffold34064 GLEAN mRNA 4098 7184 0.999999 + . ID=CGI_10001192; scaffold34084 GLEAN promoter 4841 5840 0.538078 + . ID=CGI_10001195; scaffold34084 GLEAN mRNA 5841 12878 0.538078 + . ID=CGI_10001195; scaffold34084 GLEAN mRNA 9471 15814 0.999676 - . ID=CGI_10001196; scaffold34084 GLEAN promoter 12797 13796 1 + . ID=CGI_10001197; scaffold34084 GLEAN mRNA 13797 14873 1 + . ID=CGI_10001197; scaffold34084 GLEAN promoter 14928 15927 0.996414 + . ID=CGI_10001198; scaffold34084 GLEAN promoter 15815 16814 0.999676 - . ID=CGI_10001196; scaffold34084 GLEAN mRNA 15928 16698 0.996414 + . ID=CGI_10001198; scaffold34088 GLEAN promoter 249 1248 1 + . ID=CGI_10001199; scaffold34088 GLEAN mRNA 1249 4704 1 + . ID=CGI_10001199; scaffold34088 GLEAN mRNA 6736 14285 1 - . ID=CGI_10001200; scaffold34088 GLEAN promoter 14286 15285 1 - . ID=CGI_10001200; scaffold34098 WUBlastX DNA_Harbinger 1954 2253 105 + . . scaffold34098 TRF Tandem_Repeat 5025 5060 54 + . . scaffold34098 WUBlastX DNA_Harbinger 5138 5425 71 - . . scaffold34098 WUBlastX DNA_Harbinger 5234 5443 77 - . . scaffold34098 WUBlastX DNA_Harbinger 6626 7345 376 - . . scaffold34098 GLEAN promoter 8338 9337 1 + . ID=CGI_10001204; scaffold34098 GLEAN mRNA 9338 15449 1 + . ID=CGI_10001204; scaffold341 GLEAN mRNA 5626 10876 0.889891 - . ID=CGI_10002984; scaffold341 GLEAN promoter 10877 11876 0.889891 - . ID=CGI_10002984; scaffold341 GLEAN promoter 14763 15762 0.890005 + . ID=CGI_10002985; scaffold341 GLEAN mRNA 15763 17289 0.890005 + . ID=CGI_10002985; scaffold341 GLEAN mRNA 19532 26002 0.999305 - . ID=CGI_10002986; scaffold341 GLEAN promoter 25286 26285 0.997276 + . ID=CGI_10002987; scaffold341 GLEAN promoter 26003 27002 0.999305 - . ID=CGI_10002986; scaffold341 GLEAN mRNA 26286 41116 0.997276 + . ID=CGI_10002987; scaffold341 GLEAN mRNA 53033 54137 0.999768 - . ID=CGI_10002988; scaffold341 GLEAN promoter 54138 55137 0.999768 - . ID=CGI_10002988; scaffold341 GLEAN promoter 54672 55671 0.999395 + . ID=CGI_10002989; scaffold341 GLEAN mRNA 55672 60872 0.999395 + . ID=CGI_10002989; scaffold34106 GLEAN mRNA 1207 14937 0.504518 - . ID=CGI_10001211; scaffold34106 WUBlastX LTR_DIRS 11015 11173 38 + . . scaffold34106 WUBlastX LTR_Gypsy 11290 11325 29 + . . scaffold34106 WUBlastX LTR_DIRS 11323 11448 29 + . . scaffold34106 WUBlastX LTR_Gypsy 11648 12115 71 + . . scaffold34106 WUBlastX LTR_DIRS 11729 12319 420 + . . scaffold34106 WUBlastX LTR_DIRS 12219 12440 157 + . . scaffold34106 WUBlastX LTR_DIRS 12454 12867 198 + . . scaffold34106 WUBlastX LTR_DIRS 12869 13531 412 + . . scaffold34106 WUBlastX LTR_DIRS 13222 14289 418 + . . scaffold34106 WUBlastX LTR_DIRS 13417 14337 485 + . . scaffold34106 GLEAN promoter 14938 15937 0.504518 - . ID=CGI_10001211; scaffold34124 TRF Tandem_Repeat 1057 1851 1055 + . . scaffold34124 WUBlastX LTR_Gypsy-Cigr 2516 2644 72 - . . scaffold34144 WUBlastX DNA_Maverick 5 541 320 - . . scaffold34144 WUBlastX LTR_Copia 676 984 23 - . . scaffold34144 WUBlastX DNA_Maverick 754 924 78 - . . scaffold34144 WUBlastX DNA_Maverick 754 1131 50 - . . scaffold34144 GLEAN promoter 795 1794 0.983078 + . ID=CGI_10001219; scaffold34144 GLEAN mRNA 1054 1558 0.995722 - . ID=CGI_10001218; scaffold34144 GLEAN promoter 1559 2558 0.995722 - . ID=CGI_10001218; scaffold34144 GLEAN mRNA 1795 5224 0.983078 + . ID=CGI_10001219; scaffold34144 TRF Tandem_Repeat 10900 11045 141 + . . scaffold34144 WUBlastX LINE_RTE-X 11731 12156 47 - . . scaffold34168 GLEAN mRNA 2743 14517 0.999893 - . ID=CGI_10001213; scaffold34168 GLEAN promoter 14518 15517 0.999893 - . ID=CGI_10001213; scaffold34182 GLEAN promoter 3943 4942 0.999375 + . ID=CGI_10001233; scaffold34182 GLEAN mRNA 4943 6595 0.999375 + . ID=CGI_10001233; scaffold34182 GLEAN mRNA 8063 9320 0.593391 - . ID=CGI_10001234; scaffold34182 GLEAN promoter 9321 10320 0.593391 - . ID=CGI_10001234; scaffold34192 WUBlastX DNA_Kolobok 2894 3253 102 + . . scaffold34192 WUBlastX DNA_Kolobok 2972 3253 112 + . . scaffold34192 WUBlastX DNA_Kolobok 3679 3762 42 + . . scaffold34192 WUBlastX DNA_Kolobok 3703 3801 28 + . . scaffold34192 WUBlastX DNA_Kolobok 4229 4498 21 + . . scaffold34192 WUBlastX DNA_Kolobok 4280 4504 96 + . . scaffold34192 WUBlastX DNA_Kolobok 4918 5127 33 + . . scaffold34192 WUBlastX DNA_Kolobok 4972 5142 37 + . . scaffold34192 WUBlastX DNA_Kolobok 5418 5660 103 + . . scaffold34192 WUBlastX DNA_Kolobok 6264 6482 92 - . . scaffold34192 WUBlastX DNA_Kolobok 6734 6853 20 - . . scaffold34202 GLEAN mRNA 527 10844 1 - . ID=CGI_10001227; scaffold34202 WUBlastX LINE_RTE-X 9773 9949 49 + . . scaffold34202 WUBlastX LINE_RTE-X 9785 9916 55 + . . scaffold34202 GLEAN promoter 10398 11397 0.836238 + . ID=CGI_10001228; scaffold34202 GLEAN promoter 10845 11844 1 - . ID=CGI_10001227; scaffold34202 GLEAN mRNA 11398 13592 0.836238 + . ID=CGI_10001228; scaffold34222 WUBlastX LINE_L2 12440 12709 86 + . . scaffold34222 WUBlastX LINE_L2 13047 13424 47 - . . scaffold34222 WUBlastX LINE_CR1-L2 13047 13361 84 - . . scaffold34224 WUBlastX LTR_Ngaro 11110 11688 276 - . . scaffold34224 WUBlastX LTR_Ngaro 11706 11990 66 - . . scaffold34224 WUBlastX LTR_Ngaro 12020 12409 240 - . . scaffold34224 WUBlastX LTR_Ngaro 12409 13008 359 - . . scaffold34224 WUBlastX LTR_Ngaro 12965 13603 99 - . . scaffold34224 WUBlastX LTR_Ngaro 13119 13541 131 - . . scaffold34224 WUBlastX LTR_Ngaro 13677 14129 35 - . . scaffold34224 WUBlastX LTR_Ngaro 13887 14135 93 - . . scaffold34236 WUBlastX LINE_RTE-BovB 10557 10844 180 + . . scaffold34236 WUBlastX LINE_L1-Tx1 10557 11030 43 + . . scaffold34236 WUBlastX LINE_RTE-BovB 10557 10904 78 + . . scaffold34236 TRF Tandem_Repeat 17560 17585 52 + . . scaffold34238 GLEAN promoter 11959 12958 0.966929 + . ID=CGI_10001250; scaffold34238 GLEAN mRNA 12959 17417 0.966929 + . ID=CGI_10001250; scaffold34244 GLEAN promoter 1 867 0.69447 + . ID=CGI_10001252; scaffold34244 WUBlastX LTR_DIRS 151 474 81 + . . scaffold34244 WUBlastX LTR_DIRS 679 867 49 + . . scaffold34244 GLEAN mRNA 868 1056 0.69447 + . ID=CGI_10001252; scaffold34244 TRF Tandem_Repeat 1885 2788 1069 + . . scaffold34244 GLEAN mRNA 1952 16952 0.716367 - . ID=CGI_10001253; scaffold34244 TRF Tandem_Repeat 3917 4182 363 + . . scaffold34244 TRF Tandem_Repeat 8058 8444 460 + . . scaffold34244 TRF Tandem_Repeat 10309 10349 55 + . . scaffold34244 TRF Tandem_Repeat 10312 10356 72 + . . scaffold34244 TRF Tandem_Repeat 15632 15718 50 + . . scaffold34244 TRF Tandem_Repeat 15632 15718 57 + . . scaffold34244 GLEAN promoter 16953 17730 0.716367 - . ID=CGI_10001253; scaffold34266 TRF Tandem_Repeat 5476 6238 1001 + . . scaffold34266 WUBlastX LTR_DIRS 9672 10019 43 - . . scaffold34266 WUBlastX LTR_DIRS 9687 9980 107 - . . scaffold34266 GLEAN promoter 11207 12206 1 + . ID=CGI_10001247; scaffold34266 GLEAN mRNA 12207 17264 1 + . ID=CGI_10001247; scaffold34282 GLEAN mRNA 2734 14490 1 - . ID=CGI_10001256; scaffold34282 TRF Tandem_Repeat 4344 4403 99 + . . scaffold34282 WUBlastX LINE_L1 7973 8038 23 - . . scaffold34282 WUBlastX LINE_RTE-X 8005 8271 130 - . . scaffold34282 WUBlastX LINE_RTE-X 8283 8987 333 - . . scaffold34282 WUBlastX LINE_RTE-X 8999 9484 314 - . . scaffold34282 TRF Tandem_Repeat 9506 9572 82 + . . scaffold34282 TRF Tandem_Repeat 10157 10206 64 + . . scaffold34282 WUBlastX LINE_Rex-Babar 14267 14347 21 - . . scaffold34282 WUBlastX LINE_L2 14291 14380 22 - . . scaffold34282 GLEAN promoter 14491 15490 1 - . ID=CGI_10001256; scaffold34282 TRF Tandem_Repeat 14938 15004 89 + . . scaffold34282 WUBlastX LINE_RTE-X 15024 15875 323 - . . scaffold34282 WUBlastX LINE_RTE-X 15027 16337 304 - . . scaffold34292 GLEAN mRNA 677 14731 0.964318 - . ID=CGI_10001272; scaffold34292 GLEAN promoter 14732 15731 0.964318 - . ID=CGI_10001272; scaffold34298 GLEAN mRNA 8702 17081 0.999531 - . ID=CGI_10001268; scaffold34298 GLEAN promoter 17082 18012 0.999531 - . ID=CGI_10001268; scaffold343 GLEAN promoter 1 258 0.999615 + . ID=CGI_10021742; scaffold343 GLEAN mRNA 259 3803 0.999615 + . ID=CGI_10021742; scaffold343 GLEAN promoter 4113 5112 0.965913 + . ID=CGI_10021743; scaffold343 GLEAN mRNA 5113 5577 0.965913 + . ID=CGI_10021743; scaffold343 WUBlastX LINE_L1-Tx1 42978 43334 93 + . . scaffold343 WUBlastX LINE_L1-Tx1 43032 44486 317 + . . scaffold343 WUBlastX DNA_TcMar-Marin 57255 57491 64 + . . scaffold343 WUBlastX DNA_TcMar-Marin 57403 57906 44 + . . scaffold343 WUBlastX DNA_TcMar-Marin 57481 57621 48 + . . scaffold343 TRF Tandem_Repeat 60739 60795 71 + . . scaffold343 TRF Tandem_Repeat 61680 61949 314 + . . scaffold343 TRF Tandem_Repeat 61683 61949 274 + . . scaffold343 TRF Tandem_Repeat 65732 65775 88 + . . scaffold343 TRF Tandem_Repeat 77932 78238 183 + . . scaffold343 TRF Tandem_Repeat 78069 78218 80 + . . scaffold343 TRF Tandem_Repeat 82527 82568 84 + . . scaffold343 TRF Tandem_Repeat 92933 92960 56 + . . scaffold343 WUBlastX DNA_Kolobok-IS4 93778 94080 52 - . . scaffold343 WUBlastX DNA_IS4EU 93874 94047 67 - . . scaffold343 WUBlastX DNA_Kolobok-IS4 94076 94516 120 - . . scaffold343 WUBlastX DNA_IS4EU 94091 94606 38 - . . scaffold343 WUBlastX DNA_IS4EU 95062 95520 190 + . . scaffold343 WUBlastX DNA_IS4EU 95514 95792 115 + . . scaffold343 WUBlastX DNA_Kolobok-IS4 95550 95777 127 + . . scaffold343 TRF Tandem_Repeat 96796 96848 97 + . . scaffold343 TRF Tandem_Repeat 102440 102526 140 + . . scaffold343 TRF Tandem_Repeat 103210 103259 66 + . . scaffold343 TRF Tandem_Repeat 103642 103693 104 + . . scaffold343 TRF Tandem_Repeat 105151 105201 75 + . . scaffold343 WUBlastX LINE_Penelope 110270 110470 63 + . . scaffold343 TRF Tandem_Repeat 120417 121789 1944 + . . scaffold343 TRF Tandem_Repeat 120417 121789 1978 + . . scaffold343 TRF Tandem_Repeat 121951 122028 95 + . . scaffold343 TRF Tandem_Repeat 129846 129872 54 + . . scaffold343 TRF Tandem_Repeat 130146 130250 70 + . . scaffold343 TRF Tandem_Repeat 130203 130313 77 + . . scaffold343 WUBlastX LINE_L1-Tx1 134848 135096 32 - . . scaffold343 TRF Tandem_Repeat 135892 135936 54 + . . scaffold343 GLEAN mRNA 141741 143745 0.999669 - . ID=CGI_10021744; scaffold343 GLEAN promoter 143746 144745 0.999669 - . ID=CGI_10021744; scaffold343 TRF Tandem_Repeat 143848 143914 80 + . . scaffold343 TRF Tandem_Repeat 143848 143912 94 + . . scaffold343 TRF Tandem_Repeat 170096 170149 108 + . . scaffold343 TRF Tandem_Repeat 208227 208255 58 + . . scaffold343 TRF Tandem_Repeat 210453 210495 86 + . . scaffold343 TRF Tandem_Repeat 211153 211541 433 + . . scaffold343 WUBlastX DNA_TcMar-Pogo 212921 213685 275 + . . scaffold343 WUBlastX DNA_TcMar-Pogo 213041 213682 360 + . . scaffold343 WUBlastX DNA_TcMar-Pogo 213666 214310 341 + . . scaffold343 WUBlastX DNA_TcMar-Pogo 213684 214457 318 + . . scaffold343 WUBlastX DNA_PiggyBac 227311 227697 62 + . . scaffold343 TRF Tandem_Repeat 250471 250516 51 + . . scaffold343 TRF Tandem_Repeat 261569 261601 66 + . . scaffold343 TRF Tandem_Repeat 262448 262476 58 + . . scaffold343 TRF Tandem_Repeat 264077 264136 111 + . . scaffold343 GLEAN mRNA 265429 300603 0.987125 - . ID=CGI_10021745; scaffold343 TRF Tandem_Repeat 274248 274295 60 + . . scaffold343 TRF Tandem_Repeat 274251 274295 81 + . . scaffold343 TRF Tandem_Repeat 283666 283913 397 + . . scaffold343 GLEAN promoter 300604 301603 0.987125 - . ID=CGI_10021745; scaffold343 TRF Tandem_Repeat 312799 312853 101 + . . scaffold343 GLEAN mRNA 315445 315690 1 - . ID=CGI_10021746; scaffold343 GLEAN promoter 315691 316690 1 - . ID=CGI_10021746; scaffold343 TRF Tandem_Repeat 318093 318142 82 + . . scaffold343 GLEAN mRNA 318267 318512 1 - . ID=CGI_10021747; scaffold343 GLEAN promoter 318513 319512 1 - . ID=CGI_10021747; scaffold343 TRF Tandem_Repeat 321327 321371 90 + . . scaffold343 TRF Tandem_Repeat 321371 321410 66 + . . scaffold343 GLEAN promoter 325136 326135 0.993905 + . ID=CGI_10021748; scaffold343 GLEAN mRNA 326136 327980 0.993905 + . ID=CGI_10021748; scaffold343 GLEAN mRNA 330898 333803 0.999962 - . ID=CGI_10021749; scaffold343 GLEAN promoter 333804 334803 0.999962 - . ID=CGI_10021749; scaffold343 TRF Tandem_Repeat 338948 338986 60 + . . scaffold343 GLEAN mRNA 339184 340140 0.999999 - . ID=CGI_10021750; scaffold343 WUBlastX LINE_RTE-X 339211 339765 45 - . . scaffold343 WUBlastX LINE_RTE-X 339295 340662 430 - . . scaffold343 GLEAN promoter 340141 341140 0.999999 - . ID=CGI_10021750; scaffold343 WUBlastX LINE_RTE-X 340671 340901 99 - . . scaffold343 WUBlastX LINE_RTE-X 340752 340901 119 - . . scaffold343 WUBlastX LINE_L2 340752 340949 84 - . . scaffold343 WUBlastX LINE_CR1 340895 340993 55 - . . scaffold343 WUBlastX LINE_CR1 340895 341014 27 - . . scaffold343 GLEAN mRNA 343360 349173 1 - . ID=CGI_10021751; scaffold343 GLEAN promoter 349174 350173 1 - . ID=CGI_10021751; scaffold343 TRF Tandem_Repeat 350391 350440 100 + . . scaffold343 TRF Tandem_Repeat 350980 351027 96 + . . scaffold343 WUBlastX LINE_RTE-X 359335 359598 68 + . . scaffold343 WUBlastX LINE_RTE-X 359398 359640 33 + . . scaffold343 TRF Tandem_Repeat 359785 360152 252 + . . scaffold343 TRF Tandem_Repeat 361522 361561 80 + . . scaffold343 WUBlastX LINE_RTE-X 365586 365768 30 + . . scaffold343 WUBlastX LINE_RTE-X 365589 365714 36 + . . scaffold343 WUBlastX LINE_RTE-X 367476 367622 21 + . . scaffold343 WUBlastX LINE_RTE-X 367500 367682 30 + . . scaffold343 WUBlastX LINE_RTE-X 367503 367628 36 + . . scaffold343 WUBlastX LINE_RTE-X 368479 368748 26 + . . scaffold343 WUBlastX LINE_RTE-X 368482 368628 32 + . . scaffold343 WUBlastX LINE_RTE-X 368551 368649 43 + . . scaffold343 WUBlastX LINE_RTE-X 368847 369023 43 + . . scaffold343 WUBlastX LINE_RTE-X 368901 369023 62 + . . scaffold343 WUBlastX DNA_TcMar-Marin 369258 369341 58 - . . scaffold343 WUBlastX DNA_TcMar-Marin 369261 369443 23 - . . scaffold343 WUBlastX LINE_R2-Hero 369443 372046 1032 - . . scaffold343 WUBlastX LINE_R2-Hero 372043 372096 22 - . . scaffold343 TRF Tandem_Repeat 377743 377789 62 + . . scaffold343 WUBlastX LTR_Gypsy 378568 378702 65 + . . scaffold343 WUBlastX LTR_Gypsy 378719 378769 30 + . . scaffold343 GLEAN mRNA 383034 388505 0.392636 - . ID=CGI_10021752; scaffold343 GLEAN promoter 388461 389460 0.531604 + . ID=CGI_10021753; scaffold343 GLEAN promoter 388506 389505 0.392636 - . ID=CGI_10021752; scaffold343 GLEAN mRNA 389461 393211 0.531604 + . ID=CGI_10021753; scaffold343 TRF Tandem_Repeat 402187 402477 519 + . . scaffold343 TRF Tandem_Repeat 409740 410015 552 + . . scaffold343 GLEAN mRNA 420537 423040 0.937847 - . ID=CGI_10021754; scaffold343 GLEAN promoter 423041 424040 0.937847 - . ID=CGI_10021754; scaffold343 GLEAN promoter 426546 427545 0.682069 + . ID=CGI_10021755; scaffold343 GLEAN mRNA 427546 431431 0.682069 + . ID=CGI_10021755; scaffold343 GLEAN promoter 431183 432182 0.997954 + . ID=CGI_10021756; scaffold343 GLEAN mRNA 432183 441781 0.997954 + . ID=CGI_10021756; scaffold343 GLEAN mRNA 444363 456299 0.39063 - . ID=CGI_10021757; scaffold343 GLEAN promoter 456300 457299 0.39063 - . ID=CGI_10021757; scaffold343 GLEAN mRNA 457855 470630 0.971846 - . ID=CGI_10021758; scaffold343 GLEAN promoter 470631 471630 0.971846 - . ID=CGI_10021758; scaffold343 TRF Tandem_Repeat 473848 475172 1528 + . . scaffold343 GLEAN mRNA 475187 488280 0.753681 - . ID=CGI_10021759; scaffold343 TRF Tandem_Repeat 477919 477957 78 + . . scaffold343 TRF Tandem_Repeat 482506 482622 116 + . . scaffold343 TRF Tandem_Repeat 482506 482651 119 + . . scaffold343 TRF Tandem_Repeat 484643 485351 661 + . . scaffold343 TRF Tandem_Repeat 484643 485348 840 + . . scaffold343 TRF Tandem_Repeat 487427 487464 76 + . . scaffold343 GLEAN promoter 488281 489280 0.753681 - . ID=CGI_10021759; scaffold343 TRF Tandem_Repeat 491796 491843 96 + . . scaffold343 TRF Tandem_Repeat 492624 492663 80 + . . scaffold343 GLEAN promoter 494311 495310 0.841229 + . ID=CGI_10021760; scaffold343 GLEAN mRNA 495311 511270 0.841229 + . ID=CGI_10021760; scaffold343 TRF Tandem_Repeat 508703 509714 1542 + . . scaffold343 TRF Tandem_Repeat 508703 509750 1553 + . . scaffold343 GLEAN mRNA 512466 529028 1 - . ID=CGI_10021761; scaffold343 TRF Tandem_Repeat 520442 520486 90 + . . scaffold343 TRF Tandem_Repeat 522471 522513 86 + . . scaffold343 GLEAN promoter 529029 530028 1 - . ID=CGI_10021761; scaffold343 GLEAN promoter 531906 532905 0.999605 + . ID=CGI_10021762; scaffold343 GLEAN mRNA 532906 540135 0.999605 + . ID=CGI_10021762; scaffold343 TRF Tandem_Repeat 542160 542208 98 + . . scaffold343 GLEAN mRNA 542569 550487 0.526717 - . ID=CGI_10021763; scaffold343 TRF Tandem_Repeat 543874 543950 56 + . . scaffold343 TRF Tandem_Repeat 543879 543927 50 + . . scaffold343 GLEAN promoter 550488 551487 0.526717 - . ID=CGI_10021763; scaffold343 GLEAN mRNA 552538 554289 0.593387 - . ID=CGI_10021764; scaffold343 GLEAN promoter 554290 555289 0.593387 - . ID=CGI_10021764; scaffold343 WUBlastX LTR_Gypsy 558072 558362 41 + . . scaffold343 WUBlastX LTR_Gypsy 558171 558389 42 + . . scaffold343 TRF Tandem_Repeat 560177 560499 400 + . . scaffold343 WUBlastX DNA_hAT-Tip100 560635 560850 64 - . . scaffold343 WUBlastX DNA_hAT-Tip100 560635 561090 37 - . . scaffold343 WUBlastX DNA_hAT-Tip100 560638 560985 43 - . . scaffold343 WUBlastX DNA_hAT-Tip100 560731 560913 49 - . . scaffold343 WUBlastX DNA_hAT-Tip100 561302 562033 117 - . . scaffold343 WUBlastX DNA_hAT-Tip100 561440 562069 209 - . . scaffold343 WUBlastX DNA_hAT-Tip100 562081 562482 49 - . . scaffold343 TRF Tandem_Repeat 563262 564049 1040 + . . scaffold343 TRF Tandem_Repeat 569740 570694 1183 + . . scaffold343 WUBlastX LINE_L1-Tx1 575001 575294 95 - . . scaffold343 TRF Tandem_Repeat 587493 588156 883 + . . scaffold343 GLEAN mRNA 590269 590463 0.774553 - . ID=CGI_10021765; scaffold343 GLEAN promoter 590464 591463 0.774553 - . ID=CGI_10021765; scaffold343 WUBlastX LINE_L1 590736 591083 60 - . . scaffold343 GLEAN mRNA 595357 595614 0.999984 - . ID=CGI_10021766; scaffold343 GLEAN promoter 595615 596614 0.999984 - . ID=CGI_10021766; scaffold343 WUBlastX LTR_Pao 596761 597189 186 + . . scaffold343 WUBlastX LTR_Pao 596797 597297 86 + . . scaffold343 TRF Tandem_Repeat 597659 597690 55 + . . scaffold343 WUBlastX LINE_CR1 602580 602801 87 + . . scaffold343 GLEAN promoter 605783 606782 0.949663 + . ID=CGI_10021767; scaffold343 GLEAN mRNA 606783 616118 0.949663 + . ID=CGI_10021767; scaffold343 TRF Tandem_Repeat 608523 608551 58 + . . scaffold343 TRF Tandem_Repeat 611056 611092 74 + . . scaffold343 WUBlastX RC_Helitron 612639 613220 115 - . . scaffold343 WUBlastX LINE_L2 612651 613325 63 - . . scaffold343 WUBlastX DNA_Helitron 614260 615435 442 - . . scaffold343 WUBlastX RC_Helitron 615196 615486 39 - . . scaffold343 WUBlastX LTR_Gypsy 616480 616869 74 + . . scaffold343 GLEAN promoter 617887 618886 0.427987 + . ID=CGI_10021769; scaffold343 GLEAN mRNA 618238 636839 0.461317 - . ID=CGI_10021768; scaffold343 GLEAN mRNA 618887 626946 0.427987 + . ID=CGI_10021769; scaffold343 WUBlastX DNA_Zator 619366 621462 1225 + . . scaffold343 WUBlastX DNA_Kolobok 624008 624271 141 - . . scaffold343 WUBlastX DNA_Kolobok 624044 624325 111 - . . scaffold343 TRF Tandem_Repeat 632195 632328 130 + . . scaffold343 TRF Tandem_Repeat 632850 633427 753 + . . scaffold343 TRF Tandem_Repeat 632850 633427 845 + . . scaffold343 GLEAN promoter 636840 637839 0.461317 - . ID=CGI_10021768; scaffold343 WUBlastX DNA_Maverick 636939 637553 103 - . . scaffold343 GLEAN promoter 637007 638006 0.437505 + . ID=CGI_10021770; scaffold343 WUBlastX DNA_Maverick 637035 637505 198 - . . scaffold343 GLEAN mRNA 638007 638898 0.437505 + . ID=CGI_10021770; scaffold343 TRF Tandem_Repeat 638304 638336 66 + . . scaffold343 WUBlastX DNA_Maverick 638983 639300 184 - . . scaffold343 WUBlastX DNA_Maverick 639386 639520 77 - . . scaffold343 WUBlastX DNA_Maverick 639538 639984 175 - . . scaffold343 WUBlastX DNA_Maverick 639610 639930 231 - . . scaffold343 WUBlastX DNA_Maverick 639997 642297 1371 - . . scaffold343 WUBlastX DNA_Maverick 641155 642591 405 - . . scaffold343 GLEAN promoter 642952 643951 0.514976 + . ID=CGI_10021772; scaffold343 WUBlastX DNA_Maverick 643748 643960 79 - . . scaffold343 WUBlastX DNA_Maverick 643748 643999 45 - . . scaffold343 GLEAN mRNA 643828 662585 1 - . ID=CGI_10021771; scaffold343 GLEAN mRNA 643952 644134 0.514976 + . ID=CGI_10021772; scaffold343 TRF Tandem_Repeat 645566 645895 254 + . . scaffold343 WUBlastX LINE_RTE-X 646379 646465 23 - . . scaffold343 WUBlastX LINE_RTE-BovB 646743 646778 22 - . . scaffold343 WUBlastX LINE_RTE-BovB 647014 647877 354 - . . scaffold343 GLEAN promoter 647729 648728 1 + . ID=CGI_10021773; scaffold343 WUBlastX LINE_L1 647870 647947 39 - . . scaffold343 WUBlastX LINE_RTE-BovB 647891 648127 99 - . . scaffold343 TRF Tandem_Repeat 648143 648177 70 + . . scaffold343 WUBlastX LINE_L2 648177 648224 21 - . . scaffold343 GLEAN mRNA 648729 652436 1 + . ID=CGI_10021773; scaffold343 WUBlastX DNA_hAT-Blackja 662016 662336 107 + . . scaffold343 GLEAN promoter 662586 663585 1 - . ID=CGI_10021771; scaffold343 TRF Tandem_Repeat 666911 667047 233 + . . scaffold343 WUBlastX DNA_TcMar-Fot1 668593 670182 199 - . . scaffold343 WUBlastX DNA_TcMar-Fot1 668920 670182 333 - . . scaffold343 WUBlastX DNA_TcMar-Fot1 669157 670251 395 - . . scaffold343 WUBlastX DNA_TcMar-Marin 679573 679662 35 + . . scaffold343 TRF Tandem_Repeat 703057 703118 81 + . . scaffold343 TRF Tandem_Repeat 708043 708076 50 + . . scaffold34302 GLEAN promoter 1 960 0.696945 + . ID=CGI_10001259; scaffold34302 GLEAN mRNA 961 13534 0.696945 + . ID=CGI_10001259; scaffold34302 WUBlastX DNA_IS4EU 12411 12845 36 + . . scaffold34302 WUBlastX DNA_IS4EU 13321 13455 32 + . . scaffold34302 WUBlastX DNA_Kolobok-IS4 13593 13787 82 + . . scaffold34302 WUBlastX DNA_IS4EU 14316 14609 69 - . . scaffold34302 WUBlastX DNA_IS4EU 14364 14582 122 - . . scaffold34302 WUBlastX DNA_Kolobok-IS4 14370 14639 104 - . . scaffold34308 WUBlastX LTR_DIRS 8260 10587 1253 - . . scaffold34308 WUBlastX LTR_Gypsy 10536 11039 45 - . . scaffold34308 WUBlastX LTR_Gypsy 10536 10922 60 - . . scaffold34308 WUBlastX LTR_ERV1 10539 10859 73 - . . scaffold34308 WUBlastX LTR_DIRS 10539 10805 237 - . . scaffold34308 WUBlastX DNA_Kolobok-IS4 15260 15403 30 + . . scaffold34308 WUBlastX DNA_IS4EU 15302 15406 50 + . . scaffold34308 WUBlastX DNA_IS4EU 15539 15694 21 + . . scaffold34308 WUBlastX DNA_Kolobok-IS4 15845 16018 31 + . . scaffold34308 WUBlastX DNA_IS4EU 15872 16045 39 + . . scaffold34308 WUBlastX DNA_IS4EU 15947 16018 39 + . . scaffold34308 WUBlastX DNA_IS4EU 16172 16435 64 + . . scaffold34308 WUBlastX DNA_IS4EU 16232 16426 79 + . . scaffold34308 WUBlastX DNA_IS4EU 16883 17677 368 - . . scaffold34314 TRF Tandem_Repeat 5828 5880 106 + . . scaffold34314 TRF Tandem_Repeat 8219 8299 114 + . . scaffold34314 TRF Tandem_Repeat 8443 8490 55 + . . scaffold34314 TRF Tandem_Repeat 8447 8535 88 + . . scaffold34314 WUBlastX LINE_RTE-X 10591 11343 169 + . . scaffold34314 TRF Tandem_Repeat 16756 16804 80 + . . scaffold34350 WUBlastX LTR_Gypsy-Cigr 8508 8831 118 + . . scaffold34350 WUBlastX LTR_Gypsy-Cigr 8592 8828 128 + . . scaffold34356 WUBlastX LTR_Ngaro 575 892 223 + . . scaffold34356 WUBlastX LTR_Ngaro 915 1526 346 + . . scaffold34356 TRF Tandem_Repeat 3801 3834 50 + . . scaffold34356 WUBlastX LTR_Ngaro 7612 8055 186 + . . scaffold34356 WUBlastX LTR_Ngaro 7621 8229 73 + . . scaffold34356 WUBlastX LTR_Ngaro 8327 8572 114 + . . scaffold34356 WUBlastX DNA_IS4EU 9137 9307 31 - . . scaffold34356 WUBlastX LTR_Gypsy 16116 16871 182 + . . scaffold34356 WUBlastX LTR_Gypsy 16452 16862 199 + . . scaffold34356 WUBlastX LTR_Gypsy 16873 17061 167 + . . scaffold34356 WUBlastX LTR_Gypsy 18167 18397 135 + . . scaffold34364 GLEAN promoter 496 1495 0.989184 + . ID=CGI_10001282; scaffold34364 GLEAN mRNA 1496 3978 0.989184 + . ID=CGI_10001282; scaffold34364 GLEAN promoter 6040 7039 0.558382 + . ID=CGI_10001283; scaffold34364 GLEAN mRNA 7040 7969 0.558382 + . ID=CGI_10001283; scaffold34366 GLEAN promoter 1 31 0.618241 + . ID=CGI_10001284; scaffold34366 GLEAN mRNA 32 316 0.618241 + . ID=CGI_10001284; scaffold34366 GLEAN mRNA 1775 14355 0.511644 - . ID=CGI_10001285; scaffold34366 GLEAN promoter 14356 15355 0.511644 - . ID=CGI_10001285; scaffold34366 GLEAN promoter 14945 15944 0.772353 + . ID=CGI_10001286; scaffold34366 GLEAN mRNA 15945 17603 0.772353 + . ID=CGI_10001286; scaffold34388 WUBlastX LTR_Pao 3805 4119 90 - . . scaffold34388 WUBlastX LTR_Pao 3892 4107 184 - . . scaffold34388 WUBlastX LTR_Pao 4110 4646 322 - . . scaffold34388 WUBlastX LTR_Pao 4631 4732 25 - . . scaffold34388 WUBlastX LINE_RTE-X 6542 6997 70 - . . scaffold34388 WUBlastX LINE_RTE-X 6991 7497 276 - . . scaffold34388 WUBlastX LINE_RTE-X 6997 8064 214 - . . scaffold34388 WUBlastX LINE_RTE-X 7377 8237 133 - . . scaffold34388 WUBlastX LINE_RTE-X 8177 8446 48 - . . scaffold34388 WUBlastX LINE_RTE-X 8180 8350 52 - . . scaffold34388 WUBlastX LINE_RTE-X 8385 8528 26 - . . scaffold344 GLEAN promoter 7235 8234 0.452382 + . ID=CGI_10002322; scaffold344 GLEAN mRNA 8235 27567 0.452382 + . ID=CGI_10002322; scaffold344 TRF Tandem_Repeat 15035 15101 80 + . . scaffold344 TRF Tandem_Repeat 15035 15101 89 + . . scaffold344 TRF Tandem_Repeat 30777 30822 92 + . . scaffold344 WUBlastX LTR_Pao 37545 38513 936 + . . scaffold344 GLEAN promoter 38687 39686 0.776794 + . ID=CGI_10002323; scaffold344 GLEAN mRNA 39687 39944 0.776794 + . ID=CGI_10002323; scaffold344 TRF Tandem_Repeat 40398 40425 56 + . . scaffold344 WUBlastX LINE_RTE-X 40965 42443 533 + . . scaffold34420 WUBlastX LINE_L1-Tx1 4 762 526 - . . scaffold34420 WUBlastX LINE_L1 1343 2074 42 + . . scaffold34420 WUBlastX LINE_L2 1526 2221 115 + . . scaffold34420 WUBlastX LINE_L2 1628 2161 137 + . . scaffold34420 WUBlastX LINE_L1-Tx1 2657 3598 588 + . . scaffold34438 TRF Tandem_Repeat 1675 1724 91 + . . scaffold34438 WUBlastX RC_Helitron 10325 10660 62 - . . scaffold34438 WUBlastX DNA_Helitron 10454 11794 442 - . . scaffold34438 WUBlastX RC_Helitron 10463 12034 385 - . . scaffold34438 WUBlastX RC_Helitron 12277 12834 157 - . . scaffold34438 WUBlastX RC_Helitron 12824 13318 154 - . . scaffold34438 WUBlastX RC_Helitron 12866 13258 240 - . . scaffold34438 WUBlastX RC_Helitron 13333 13848 179 - . . scaffold34438 WUBlastX RC_Helitron 14886 15461 41 - . . scaffold34438 TRF Tandem_Repeat 17343 17413 79 + . . scaffold34442 TRF Tandem_Repeat 1974 2074 112 + . . scaffold34442 TRF Tandem_Repeat 2146 2237 103 + . . scaffold34442 TRF Tandem_Repeat 2281 2433 173 + . . scaffold34442 TRF Tandem_Repeat 2652 2745 109 + . . scaffold34442 WUBlastX LTR_Ngaro 11825 12025 25 + . . scaffold34442 WUBlastX LTR_Ngaro 11946 12314 130 + . . scaffold34442 WUBlastX LTR_Ngaro 12030 12530 46 + . . scaffold34442 WUBlastX LTR_Ngaro 12595 14118 902 + . . scaffold34442 WUBlastX LTR_Ngaro 14125 15051 118 + . . scaffold34442 WUBlastX LTR_Ngaro 14455 15051 174 + . . scaffold34510 GLEAN promoter 824 1823 0.553204 + . ID=CGI_10001303; scaffold34510 GLEAN mRNA 1824 13493 0.553204 + . ID=CGI_10001303; scaffold34510 GLEAN promoter 16594 17593 0.999372 + . ID=CGI_10001304; scaffold34510 GLEAN mRNA 17594 17923 0.999372 + . ID=CGI_10001304; scaffold34528 TRF Tandem_Repeat 2212 2837 1049 + . . scaffold34528 WUBlastX DNA_Academ 5055 5279 45 - . . scaffold34534 TRF Tandem_Repeat 1007 1052 92 + . . scaffold34534 TRF Tandem_Repeat 2680 2748 111 + . . scaffold34534 WUBlastX LINE_CR1-L2 15085 15297 51 + . . scaffold34544 GLEAN mRNA 444 16174 0.863777 - . ID=CGI_10001322; scaffold34544 GLEAN promoter 16175 17174 0.863777 - . ID=CGI_10001322; scaffold34548 GLEAN promoter 4268 5267 0.999942 + . ID=CGI_10001309; scaffold34548 GLEAN mRNA 5268 18113 0.999942 + . ID=CGI_10001309; scaffold34572 GLEAN mRNA 9523 18095 0.999909 - . ID=CGI_10001316; scaffold34572 WUBlastX DNA_TcMar-Tc1 16138 17151 406 - . . scaffold34572 GLEAN promoter 18096 19095 0.999909 - . ID=CGI_10001316; scaffold34572 TRF Tandem_Repeat 19078 19170 87 + . . scaffold34572 TRF Tandem_Repeat 19088 19178 101 + . . scaffold34574 TRF Tandem_Repeat 166 232 80 + . . scaffold34574 TRF Tandem_Repeat 6367 6436 59 + . . scaffold34574 TRF Tandem_Repeat 7840 7891 97 + . . scaffold34574 WUBlastX LINE_CR1-L2 8527 8871 39 + . . scaffold34574 WUBlastX LINE_L2 8542 8724 43 + . . scaffold34574 WUBlastX LTR_Ngaro 12649 12780 75 + . . scaffold34574 TRF Tandem_Repeat 16455 16788 571 + . . scaffold34580 TRF Tandem_Repeat 3513 3548 54 + . . scaffold34580 TRF Tandem_Repeat 11046 11078 66 + . . scaffold34580 WUBlastX LTR_DIRS 14661 14873 103 - . . scaffold34580 WUBlastX LTR_DIRS 14673 14837 107 - . . scaffold34580 WUBlastX LTR_Pao 15492 16136 50 - . . scaffold34582 GLEAN mRNA 734 7418 0.833469 - . ID=CGI_10001319; scaffold34582 GLEAN promoter 7419 8418 0.833469 - . ID=CGI_10001319; scaffold34582 GLEAN promoter 16150 17149 0.999797 + . ID=CGI_10001321; scaffold34582 GLEAN mRNA 17150 19131 0.999797 + . ID=CGI_10001321; scaffold34594 GLEAN promoter 4594 5593 0.992512 + . ID=CGI_10001317; scaffold34594 GLEAN mRNA 5594 16260 0.992512 + . ID=CGI_10001317; scaffold34594 WUBlastX LINE_L2 6113 6667 186 - . . scaffold34594 WUBlastX LINE_L2 6663 7262 80 - . . scaffold34594 WUBlastX LINE_L2 6678 7181 273 - . . scaffold34594 TRF Tandem_Repeat 7912 8160 301 + . . scaffold34594 TRF Tandem_Repeat 12312 12341 51 + . . scaffold34594 TRF Tandem_Repeat 13524 13608 61 + . . scaffold34594 GLEAN promoter 15658 16657 0.961547 + . ID=CGI_10001318; scaffold34594 TRF Tandem_Repeat 15902 15968 134 + . . scaffold34594 GLEAN mRNA 16658 18660 0.961547 + . ID=CGI_10001318; scaffold34594 TRF Tandem_Repeat 18816 18855 80 + . . scaffold34596 GLEAN mRNA 238 15197 0.650923 - . ID=CGI_10001323; scaffold34596 GLEAN promoter 1015 2014 0.999994 + . ID=CGI_10001324; scaffold34596 GLEAN mRNA 2015 6742 0.999994 + . ID=CGI_10001324; scaffold34596 TRF Tandem_Repeat 3040 4112 964 + . . scaffold34596 WUBlastX DNA_TcMar-Tc1 6662 6757 29 + . . scaffold34596 WUBlastX DNA_TcMar-Tc1 6852 7226 108 + . . scaffold34596 WUBlastX DNA_TcMar-Tc1 6921 7226 186 + . . scaffold34596 TRF Tandem_Repeat 8359 8462 70 + . . scaffold34596 TRF Tandem_Repeat 11814 11880 71 + . . scaffold34596 TRF Tandem_Repeat 14427 14551 139 + . . scaffold34596 GLEAN promoter 15198 16197 0.650923 - . ID=CGI_10001323; scaffold34596 WUBlastX DNA_TcMar-Marin 16774 17160 46 + . . scaffold34596 WUBlastX DNA_TcMar-Marin 16858 17148 72 + . . scaffold34596 TRF Tandem_Repeat 18714 18814 105 + . . scaffold34610 WUBlastX LTR_Gypsy 4 174 116 - . . scaffold34610 WUBlastX LTR_Gypsy 4 267 82 - . . scaffold34610 WUBlastX LTR_Gypsy 4 357 39 - . . scaffold34610 WUBlastX LTR_Gypsy-Cigr 335 1231 576 - . . scaffold34610 WUBlastX LTR_Gypsy-Cigr 473 1231 625 - . . scaffold34610 WUBlastX LTR_Gypsy 1222 1779 377 - . . scaffold34610 WUBlastX LTR_Gypsy-Cigr 1228 1689 432 - . . scaffold34610 WUBlastX LTR_Gypsy 1231 1944 178 - . . scaffold34610 WUBlastX LTR_Gypsy 1934 2737 146 - . . scaffold34610 WUBlastX LTR_Gypsy 2758 3669 23 - . . scaffold34610 WUBlastX LTR_Gypsy 3112 3660 31 - . . scaffold34610 WUBlastX LTR_Gypsy-Cigr 3196 3915 189 - . . scaffold34610 TRF Tandem_Repeat 9322 9357 72 + . . scaffold34610 WUBlastX DNA_Harbinger 10084 10326 73 + . . scaffold34610 WUBlastX DNA_Harbinger 10476 10592 40 + . . scaffold34610 WUBlastX DNA_Harbinger 11204 11701 88 + . . scaffold34610 WUBlastX DNA_Harbinger 11324 11821 134 + . . scaffold34610 WUBlastX DNA_Harbinger 11327 11701 167 + . . scaffold34610 WUBlastX DNA_Harbinger 12165 12524 115 + . . scaffold34610 WUBlastX LINE_Rex-Babar 15551 15625 26 - . . scaffold34610 WUBlastX LINE_CR1-L2 16254 16625 77 - . . scaffold34610 WUBlastX LINE_L2 16257 17084 34 - . . scaffold34610 WUBlastX LINE_CR1-L2 17074 17487 126 - . . scaffold34610 WUBlastX LINE_L2 17104 17454 138 - . . scaffold34610 WUBlastX LINE_L1-Tx1 18217 18663 71 - . . scaffold34610 WUBlastX LINE_CR1-L2 18358 18753 59 - . . scaffold34652 GLEAN mRNA 7790 18905 0.999676 - . ID=CGI_10001333; scaffold34652 GLEAN promoter 18906 19847 0.999676 - . ID=CGI_10001333; scaffold34684 GLEAN mRNA 656 3961 1 - . ID=CGI_10001339; scaffold34684 GLEAN promoter 3962 4961 1 - . ID=CGI_10001339; scaffold34694 WUBlastX LINE_RTE-BovB 4913 5119 51 - . . scaffold34694 WUBlastX LINE_RTE-BovB 4964 5128 85 - . . scaffold34694 TRF Tandem_Repeat 6768 6807 50 + . . scaffold34694 GLEAN promoter 8556 9555 0.990975 + . ID=CGI_10001356; scaffold34694 TRF Tandem_Repeat 9004 9031 56 + . . scaffold34694 TRF Tandem_Repeat 9085 9147 117 + . . scaffold34694 GLEAN mRNA 9556 12265 0.990975 + . ID=CGI_10001356; scaffold34694 TRF Tandem_Repeat 11077 11200 221 + . . scaffold34694 WUBlastX LINE_L1 15846 16013 40 + . . scaffold34694 TRF Tandem_Repeat 16338 16404 80 + . . scaffold34694 TRF Tandem_Repeat 16899 16932 68 + . . scaffold34694 TRF Tandem_Repeat 16930 16962 66 + . . scaffold34694 TRF Tandem_Repeat 17150 17196 94 + . . scaffold34694 TRF Tandem_Repeat 19585 19651 89 + . . scaffold34696 GLEAN mRNA 649 10420 1 - . ID=CGI_10001342; scaffold34696 GLEAN promoter 10421 11420 1 - . ID=CGI_10001342; scaffold34696 TRF Tandem_Repeat 12631 12868 343 + . . scaffold34696 WUBlastX LINE_RTE-X 14973 15083 37 - . . scaffold34696 WUBlastX LINE_RTE-X 15197 15355 48 - . . scaffold34696 WUBlastX DNA_Maverick 19701 20060 104 - . . scaffold34696 WUBlastX DNA_Maverick 19773 20060 114 - . . scaffold347 TRF Tandem_Repeat 99 840 925 + . . scaffold347 TRF Tandem_Repeat 103 762 249 + . . scaffold347 GLEAN promoter 1745 2744 0.544841 + . ID=CGI_10021774; scaffold347 GLEAN mRNA 2745 10129 0.544841 + . ID=CGI_10021774; scaffold347 TRF Tandem_Repeat 3782 4250 834 + . . scaffold347 TRF Tandem_Repeat 5725 5814 90 + . . scaffold347 TRF Tandem_Repeat 10177 10787 866 + . . scaffold347 TRF Tandem_Repeat 10508 10648 89 + . . scaffold347 TRF Tandem_Repeat 10841 10891 95 + . . scaffold347 GLEAN promoter 11759 12758 0.991473 + . ID=CGI_10021775; scaffold347 TRF Tandem_Repeat 11778 11834 114 + . . scaffold347 GLEAN mRNA 12759 20479 0.991473 + . ID=CGI_10021775; scaffold347 TRF Tandem_Repeat 13537 13564 56 + . . scaffold347 TRF Tandem_Repeat 14507 14537 62 + . . scaffold347 TRF Tandem_Repeat 16477 16529 90 + . . scaffold347 TRF Tandem_Repeat 20478 20572 127 + . . scaffold347 TRF Tandem_Repeat 20542 20577 63 + . . scaffold347 GLEAN mRNA 42766 60242 0.862892 - . ID=CGI_10021776; scaffold347 GLEAN promoter 60243 61242 0.862892 - . ID=CGI_10021776; scaffold347 WUBlastX LINE_L1-Tx1 62015 62260 43 - . . scaffold347 WUBlastX LINE_L1-Tx1 62194 63261 165 - . . scaffold347 WUBlastX LINE_L1-Tx1 62767 63261 173 - . . scaffold347 TRF Tandem_Repeat 94621 94661 82 + . . scaffold347 TRF Tandem_Repeat 95084 95137 51 + . . scaffold347 GLEAN mRNA 107609 113301 0.999729 - . ID=CGI_10021777; scaffold347 GLEAN promoter 113302 114301 0.999729 - . ID=CGI_10021777; scaffold347 TRF Tandem_Repeat 113515 113568 99 + . . scaffold347 TRF Tandem_Repeat 117285 117351 71 + . . scaffold347 TRF Tandem_Repeat 117861 117911 93 + . . scaffold347 TRF Tandem_Repeat 118085 118136 88 + . . scaffold347 TRF Tandem_Repeat 120625 120691 62 + . . scaffold347 GLEAN mRNA 125547 125999 1 - . ID=CGI_10021778; scaffold347 GLEAN promoter 126000 126999 1 - . ID=CGI_10021778; scaffold347 GLEAN mRNA 127096 135007 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_CR1 127494 127868 24 + . . scaffold347 WUBlastX LINE_CR1 127569 127868 123 + . . scaffold347 WUBlastX LINE_CR1 127873 128097 166 + . . scaffold347 WUBlastX LINE_CR1 129100 129528 82 + . . scaffold347 WUBlastX LINE_CR1 129211 129528 105 + . . scaffold347 WUBlastX LINE_CR1 129498 129683 98 + . . scaffold347 WUBlastX LINE_CR1 129671 130255 257 + . . scaffold347 WUBlastX LINE_CR1 129671 130129 308 + . . scaffold347 WUBlastX LINE_CR1 130246 130407 105 + . . scaffold347 TRF Tandem_Repeat 132858 132896 78 + . . scaffold347 GLEAN promoter 135008 136007 0.556255 - . ID=CGI_10021779; scaffold347 WUBlastX LINE_L1 143616 143705 40 - . . scaffold347 WUBlastX LINE_L1-Tx1 143631 144152 66 - . . scaffold347 WUBlastX LINE_L1-Tx1 144229 144501 44 - . . scaffold347 WUBlastX LINE_L1-Tx1 144277 144843 237 - . . scaffold347 WUBlastX LINE_L1-Tx1 144839 145048 213 - . . scaffold347 WUBlastX LINE_L1-Tx1 144984 145922 158 - . . scaffold347 WUBlastX LINE_L1-Tx1 145815 145958 54 - . . scaffold347 GLEAN mRNA 148871 154210 0.984549 - . ID=CGI_10021780; scaffold347 TRF Tandem_Repeat 151270 151661 445 + . . scaffold347 TRF Tandem_Repeat 151337 151634 249 + . . scaffold347 TRF Tandem_Repeat 151389 151661 458 + . . scaffold347 GLEAN promoter 154211 155210 0.984549 - . ID=CGI_10021780; scaffold347 GLEAN mRNA 154460 156640 0.5 - . ID=CGI_10021781; scaffold347 GLEAN promoter 156641 157640 0.5 - . ID=CGI_10021781; scaffold347 WUBlastX DNA_Chapaev 156704 156916 25 - . . scaffold347 GLEAN mRNA 163344 177496 0.998902 - . ID=CGI_10021782; scaffold347 TRF Tandem_Repeat 164878 165198 498 + . . scaffold347 GLEAN promoter 177497 178496 0.998902 - . ID=CGI_10021782; scaffold347 GLEAN promoter 178848 179847 0.999997 + . ID=CGI_10021783; scaffold347 GLEAN mRNA 179848 189576 0.999997 + . ID=CGI_10021783; scaffold347 TRF Tandem_Repeat 190198 190353 312 + . . scaffold347 TRF Tandem_Repeat 192404 192448 90 + . . scaffold347 GLEAN promoter 197660 198659 0.540242 + . ID=CGI_10021784; scaffold347 GLEAN mRNA 198660 205707 0.540242 + . ID=CGI_10021784; scaffold347 TRF Tandem_Repeat 203753 204078 428 + . . scaffold347 TRF Tandem_Repeat 204303 204535 385 + . . scaffold347 GLEAN promoter 206504 207503 1 + . ID=CGI_10021785; scaffold347 GLEAN mRNA 207504 213109 1 + . ID=CGI_10021785; scaffold347 GLEAN mRNA 217866 225837 0.993145 - . ID=CGI_10021786; scaffold347 TRF Tandem_Repeat 219386 219494 89 + . . scaffold347 GLEAN promoter 225838 226837 0.993145 - . ID=CGI_10021786; scaffold347 TRF Tandem_Repeat 227044 227086 70 + . . scaffold347 TRF Tandem_Repeat 227048 227085 51 + . . scaffold347 TRF Tandem_Repeat 231177 231337 224 + . . scaffold347 GLEAN mRNA 231355 265361 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 233113 233846 1117 + . . scaffold347 TRF Tandem_Repeat 235028 235223 286 + . . scaffold347 TRF Tandem_Repeat 235028 235221 248 + . . scaffold347 TRF Tandem_Repeat 235347 235574 375 + . . scaffold347 TRF Tandem_Repeat 239236 239651 760 + . . scaffold347 TRF Tandem_Repeat 244774 245221 797 + . . scaffold347 TRF Tandem_Repeat 252448 253394 1262 + . . scaffold347 TRF Tandem_Repeat 252620 253394 935 + . . scaffold347 WUBlastX LINE_RTE-X 261027 261164 31 - . . scaffold347 WUBlastX LINE_L1-Tx1 261167 261802 47 - . . scaffold347 WUBlastX LINE_RTE-X 261269 261778 246 - . . scaffold347 WUBlastX LINE_CR1 261341 261961 40 - . . scaffold347 WUBlastX LINE_I 261533 261850 56 - . . scaffold347 GLEAN promoter 265362 266361 0.350161 - . ID=CGI_10021787; scaffold347 TRF Tandem_Repeat 269090 269457 459 + . . scaffold347 TRF Tandem_Repeat 269090 269457 479 + . . scaffold347 GLEAN promoter 269885 270884 1 + . ID=CGI_10021788; scaffold347 GLEAN mRNA 270885 273346 1 + . ID=CGI_10021788; scaffold347 TRF Tandem_Repeat 274229 275511 1430 + . . scaffold347 GLEAN promoter 276511 277510 0.805987 + . ID=CGI_10021789; scaffold347 GLEAN mRNA 277511 289729 0.805987 + . ID=CGI_10021789; scaffold347 TRF Tandem_Repeat 280449 280486 76 + . . scaffold347 TRF Tandem_Repeat 287088 287452 209 + . . scaffold347 TRF Tandem_Repeat 287091 287452 593 + . . scaffold347 GLEAN promoter 290018 291017 0.984563 + . ID=CGI_10021790; scaffold347 GLEAN mRNA 291018 292430 0.984563 + . ID=CGI_10021790; scaffold347 GLEAN promoter 294888 295887 1 + . ID=CGI_10021791; scaffold347 TRF Tandem_Repeat 295656 295699 88 + . . scaffold347 GLEAN mRNA 295888 297333 1 + . ID=CGI_10021791; scaffold347 TRF Tandem_Repeat 297734 297791 109 + . . scaffold347 GLEAN mRNA 300788 310248 0.690079 - . ID=CGI_10021792; scaffold347 TRF Tandem_Repeat 301273 301343 142 + . . scaffold347 TRF Tandem_Repeat 302446 302506 53 + . . scaffold347 TRF Tandem_Repeat 302446 302890 718 + . . scaffold347 TRF Tandem_Repeat 304278 304444 298 + . . scaffold347 TRF Tandem_Repeat 305078 305463 169 + . . scaffold347 GLEAN promoter 310249 311248 0.690079 - . ID=CGI_10021792; scaffold347 TRF Tandem_Repeat 310525 310592 136 + . . scaffold347 GLEAN mRNA 312571 316143 1 - . ID=CGI_10021793; scaffold347 GLEAN promoter 316144 317143 1 - . ID=CGI_10021793; scaffold347 GLEAN promoter 317304 318303 0.761186 + . ID=CGI_10021794; scaffold347 GLEAN mRNA 318304 322179 0.761186 + . ID=CGI_10021794; scaffold347 TRF Tandem_Repeat 321157 321213 114 + . . scaffold347 WUBlastX LTR_DIRS 325782 326453 487 - . . scaffold347 WUBlastX LTR_DIRS 326487 326816 248 - . . scaffold347 TRF Tandem_Repeat 331002 331108 119 + . . scaffold347 TRF Tandem_Repeat 331014 331102 133 + . . scaffold347 TRF Tandem_Repeat 332600 332644 72 + . . scaffold347 WUBlastX LINE_L1-Tx1 334701 334814 29 + . . scaffold347 WUBlastX LINE_L1 334704 334838 24 + . . scaffold347 WUBlastX LINE_L1-Tx1 335052 335504 32 + . . scaffold347 WUBlastX LINE_L1 335142 335819 75 + . . scaffold347 WUBlastX LINE_L1-Tx1 335250 335819 148 + . . scaffold347 WUBlastX LINE_L1-Tx1 335551 335883 193 + . . scaffold347 WUBlastX LINE_L1 335590 335952 113 + . . scaffold347 GLEAN mRNA 348223 369659 0.813896 - . ID=CGI_10021795; scaffold347 GLEAN promoter 353894 354893 0.659728 + . ID=CGI_10021796; scaffold347 GLEAN mRNA 354894 356447 0.659728 + . ID=CGI_10021796; scaffold347 TRF Tandem_Repeat 360629 361471 1040 + . . scaffold347 TRF Tandem_Repeat 366954 368077 1644 + . . scaffold347 GLEAN promoter 369660 370659 0.813896 - . ID=CGI_10021795; scaffold347 TRF Tandem_Repeat 413020 413059 53 + . . scaffold347 TRF Tandem_Repeat 413020 413058 60 + . . scaffold347 TRF Tandem_Repeat 429846 430696 1222 + . . scaffold347 TRF Tandem_Repeat 433847 433909 99 + . . scaffold347 TRF Tandem_Repeat 433851 433910 75 + . . scaffold347 TRF Tandem_Repeat 435745 435776 64 + . . scaffold347 GLEAN promoter 449903 450902 0.957529 + . ID=CGI_10021797; scaffold347 GLEAN mRNA 450903 453853 0.957529 + . ID=CGI_10021797; scaffold347 WUBlastX DNA_TcMar-Tc1 476923 477945 299 - . . scaffold347 GLEAN promoter 479964 480963 0.998498 + . ID=CGI_10021798; scaffold347 GLEAN mRNA 480964 494397 0.998498 + . ID=CGI_10021798; scaffold347 TRF Tandem_Repeat 481724 481758 70 + . . scaffold347 TRF Tandem_Repeat 482700 482999 313 + . . scaffold347 TRF Tandem_Repeat 485085 485626 671 + . . scaffold347 TRF Tandem_Repeat 485085 485626 585 + . . scaffold347 TRF Tandem_Repeat 486289 487067 560 + . . scaffold347 TRF Tandem_Repeat 487237 487275 69 + . . scaffold347 TRF Tandem_Repeat 491053 491387 267 + . . scaffold347 TRF Tandem_Repeat 491062 491429 393 + . . scaffold347 TRF Tandem_Repeat 491068 491429 225 + . . scaffold347 TRF Tandem_Repeat 491075 491429 335 + . . scaffold347 GLEAN promoter 493676 494675 1 + . ID=CGI_10021799; scaffold347 GLEAN mRNA 494676 495635 1 + . ID=CGI_10021799; scaffold347 WUBlastX DNA_TcMar-Tc1 498303 498779 106 + . . scaffold347 WUBlastX DNA_TcMar-Tc1 498779 499213 219 + . . scaffold347 WUBlastX DNA_TcMar-Tc1 499222 499311 55 + . . scaffold347 TRF Tandem_Repeat 500429 501082 978 + . . scaffold347 TRF Tandem_Repeat 504151 504480 383 + . . scaffold347 WUBlastX LINE_RTE-X 507420 508085 103 - . . scaffold347 WUBlastX LINE_RTE-X 507543 510542 1861 - . . scaffold347 WUBlastX LINE_RTE-X 510554 511030 336 - . . scaffold347 WUBlastX LINE_Jockey 510626 511141 36 - . . scaffold347 WUBlastX LINE_RTE-X 511130 511531 195 - . . scaffold347 WUBlastX LINE_RTE-X 512361 512756 218 + . . scaffold347 TRF Tandem_Repeat 523514 523564 102 + . . scaffold347 TRF Tandem_Repeat 524156 524184 58 + . . scaffold347 GLEAN promoter 524926 525925 0.997852 + . ID=CGI_10021800; scaffold347 GLEAN mRNA 525926 534736 0.997852 + . ID=CGI_10021800; scaffold347 TRF Tandem_Repeat 526502 526535 59 + . . scaffold347 GLEAN promoter 539584 540583 0.615988 + . ID=CGI_10021801; scaffold347 GLEAN mRNA 540584 545596 0.615988 + . ID=CGI_10021801; scaffold347 WUBlastX LINE_RTE-X 548386 548898 107 - . . scaffold347 WUBlastX LINE_RTE-X 548530 548934 135 - . . scaffold347 WUBlastX LINE_RTE-X 548945 549754 170 - . . scaffold347 WUBlastX LINE_L1 549854 550579 47 - . . scaffold347 WUBlastX LINE_L2 549872 550462 137 - . . scaffold347 WUBlastX LINE_L2 552882 554951 720 + . . scaffold347 WUBlastX LINE_L2 554184 555134 28 + . . scaffold347 TRF Tandem_Repeat 555182 555215 68 + . . scaffold347 GLEAN mRNA 557781 558167 0.998205 - . ID=CGI_10021802; scaffold347 GLEAN promoter 558168 559167 0.998205 - . ID=CGI_10021802; scaffold347 WUBlastX LTR_Gypsy 564921 564959 20 - . . scaffold347 WUBlastX LTR_Gypsy 565070 567994 2433 - . . scaffold347 WUBlastX LTR_Gypsy 565091 568918 2011 - . . scaffold347 TRF Tandem_Repeat 569644 569686 86 + . . scaffold347 WUBlastX DNA_Harbinger 569867 570229 186 - . . scaffold347 WUBlastX DNA_Harbinger 569975 570310 112 - . . scaffold347 WUBlastX LINE_L1 582781 582843 20 + . . scaffold347 WUBlastX LINE_L1-Tx1 583509 583880 51 + . . scaffold347 WUBlastX LINE_L1-Tx1 583865 584251 112 + . . scaffold347 WUBlastX LINE_L1-Tx1 584152 584460 199 + . . scaffold347 WUBlastX LINE_L1 584188 584565 99 + . . scaffold347 WUBlastX LINE_L1-Tx1 584415 584627 90 + . . scaffold347 WUBlastX LINE_L1-Tx1 584630 585673 229 + . . scaffold347 TRF Tandem_Repeat 590444 590866 160 + . . scaffold347 TRF Tandem_Repeat 590459 590921 189 + . . scaffold347 GLEAN promoter 591653 592652 0.749141 + . ID=CGI_10021803; scaffold347 GLEAN mRNA 592653 598604 0.749141 + . ID=CGI_10021803; scaffold347 WUBlastX LTR_Pao 596347 598155 500 - . . scaffold347 WUBlastX LTR_Pao 596347 597837 545 - . . scaffold347 TRF Tandem_Repeat 599961 600002 84 + . . scaffold347 WUBlastX LTR_Gypsy-Cigr 601888 602325 55 + . . scaffold347 WUBlastX LTR_Gypsy 601987 602325 80 + . . scaffold347 WUBlastX LTR_Gypsy 601999 602385 48 + . . scaffold347 WUBlastX LTR_Gypsy 602559 602672 26 + . . scaffold347 WUBlastX LTR_Gypsy-Cigr 602663 603172 187 + . . scaffold347 WUBlastX LTR_Gypsy-Cigr 602747 603172 220 + . . scaffold347 WUBlastX LTR_Gypsy 603175 603519 158 + . . scaffold347 WUBlastX LTR_Gypsy 603232 604008 297 + . . scaffold347 WUBlastX LTR_Gypsy 603361 604029 565 + . . scaffold347 WUBlastX LTR_Gypsy 603361 604242 376 + . . scaffold347 WUBlastX LTR_Gypsy 604196 604270 21 + . . scaffold347 TRF Tandem_Repeat 607891 607926 54 + . . scaffold347 TRF Tandem_Repeat 637127 637179 97 + . . scaffold347 GLEAN promoter 637569 638568 0.709903 + . ID=CGI_10021804; scaffold347 GLEAN mRNA 638569 649171 0.709903 + . ID=CGI_10021804; scaffold347 TRF Tandem_Repeat 643681 643749 138 + . . scaffold347 TRF Tandem_Repeat 645244 645362 193 + . . scaffold347 GLEAN mRNA 648161 659682 0.997772 - . ID=CGI_10021805; scaffold347 WUBlastX DNA_TcMar-Tc1 654810 655823 386 - . . scaffold347 GLEAN promoter 659683 660682 0.997772 - . ID=CGI_10021805; scaffold347 TRF Tandem_Repeat 660280 660354 125 + . . scaffold347 WUBlastX LINE_L1-Tx1 678596 679000 51 + . . scaffold347 TRF Tandem_Repeat 681595 681658 83 + . . scaffold347 TRF Tandem_Repeat 681596 681671 80 + . . scaffold347 TRF Tandem_Repeat 698433 698470 51 + . . scaffold347 GLEAN promoter 701188 702187 0.201351 + . ID=CGI_10021806; scaffold347 GLEAN mRNA 702188 711517 0.201351 + . ID=CGI_10021806; scaffold347 TRF Tandem_Repeat 705980 706005 52 + . . scaffold347 GLEAN promoter 710979 711978 0.80238 + . ID=CGI_10021807; scaffold347 GLEAN mRNA 711979 712598 0.80238 + . ID=CGI_10021807; scaffold347 TRF Tandem_Repeat 713641 713694 99 + . . scaffold347 WUBlastX LTR_Gypsy 715561 716106 89 - . . scaffold347 WUBlastX LTR_Gypsy 715741 716106 131 - . . scaffold347 WUBlastX LTR_Gypsy 715804 716106 152 - . . scaffold34700 GLEAN mRNA 1 5370 1 - . ID=CGI_10001337; scaffold34700 GLEAN promoter 5371 6370 1 - . ID=CGI_10001337; scaffold34700 GLEAN promoter 9604 10603 0.592974 + . ID=CGI_10001338; scaffold34700 GLEAN mRNA 10604 11362 0.592974 + . ID=CGI_10001338; scaffold34710 TRF Tandem_Repeat 650 688 78 + . . scaffold34710 GLEAN mRNA 710 2633 1 - . ID=CGI_10001343; scaffold34710 GLEAN promoter 2634 3633 1 - . ID=CGI_10001343; scaffold34710 GLEAN mRNA 4057 6380 0.593383 - . ID=CGI_10001344; scaffold34710 GLEAN promoter 5601 6600 0.999999 + . ID=CGI_10001345; scaffold34710 GLEAN promoter 6381 7380 0.593383 - . ID=CGI_10001344; scaffold34710 GLEAN mRNA 6601 15146 0.999999 + . ID=CGI_10001345; scaffold34710 TRF Tandem_Repeat 16783 17031 417 + . . scaffold34710 WUBlastX LINE_RTE-X 19064 19210 49 + . . scaffold34710 WUBlastX LINE_RTE-X 19212 19586 45 + . . scaffold34710 WUBlastX LINE_RTE-X 19598 19750 53 + . . scaffold34714 GLEAN mRNA 9291 13868 1 - . ID=CGI_10001336; scaffold34714 GLEAN promoter 13869 14868 1 - . ID=CGI_10001336; scaffold34724 GLEAN promoter 8569 9568 1 + . ID=CGI_10001349; scaffold34724 GLEAN mRNA 9569 17224 1 + . ID=CGI_10001349; scaffold34724 GLEAN promoter 16811 17810 1 + . ID=CGI_10001350; scaffold34724 GLEAN mRNA 17811 18511 1 + . ID=CGI_10001350; scaffold34732 GLEAN promoter 3188 4187 0.354752 + . ID=CGI_10001334; scaffold34732 GLEAN mRNA 4188 11797 0.354752 + . ID=CGI_10001334; scaffold34732 GLEAN mRNA 11726 18752 1 - . ID=CGI_10001335; scaffold34732 TRF Tandem_Repeat 13638 13746 92 + . . scaffold34732 WUBlastX LINE_L1-Tx1 16104 16385 47 + . . scaffold34732 WUBlastX LINE_L1 16245 16373 54 + . . scaffold34732 WUBlastX LINE_L1-Tx1 16352 16564 47 + . . scaffold34732 WUBlastX LINE_L1-Tx1 16367 16708 31 + . . scaffold34732 TRF Tandem_Repeat 18141 18289 104 + . . scaffold34732 GLEAN promoter 18753 19752 1 - . ID=CGI_10001335; scaffold34740 TRF Tandem_Repeat 1980 2034 110 + . . scaffold34740 WUBlastX LTR_Ngaro 7197 7691 266 - . . scaffold34740 WUBlastX LTR_Ngaro 7209 7601 270 - . . scaffold34740 WUBlastX LTR_Ngaro 7681 7785 81 - . . scaffold34740 WUBlastX LINE_CR1-L2 7936 8043 35 + . . scaffold34740 WUBlastX LINE_L2 8009 8218 32 + . . scaffold34740 TRF Tandem_Repeat 19817 19842 52 + . . scaffold34742 WUBlastX DNA_Crypton 694 1608 76 - . . scaffold34742 WUBlastX DNA_Crypton 700 1413 115 - . . scaffold34742 WUBlastX LINE_Penelope 12431 12679 30 + . . scaffold34742 TRF Tandem_Repeat 16345 16399 65 + . . scaffold34742 TRF Tandem_Repeat 16348 16403 71 + . . scaffold34756 GLEAN promoter 1 20 0.775658 + . ID=CGI_10001358; scaffold34756 GLEAN mRNA 21 10691 0.775658 + . ID=CGI_10001358; scaffold34756 GLEAN promoter 12723 13722 0.581747 + . ID=CGI_10001359; scaffold34756 GLEAN mRNA 13723 14166 0.581747 + . ID=CGI_10001359; scaffold34780 GLEAN mRNA 9616 10491 1 - . ID=CGI_10001367; scaffold34780 GLEAN promoter 10492 11491 1 - . ID=CGI_10001367; scaffold34780 TRF Tandem_Repeat 17042 17080 69 + . . scaffold34780 TRF Tandem_Repeat 17539 17582 79 + . . scaffold34780 WUBlastX LINE_L1-Tx1 20288 20644 114 + . . scaffold34780 WUBlastX LINE_L1 20303 20707 49 + . . scaffold34780 WUBlastX LINE_L1-Tx1 20647 20736 39 + . . scaffold34780 WUBlastX LINE_L1-Tx1 20662 20820 32 + . . scaffold34794 GLEAN promoter 6772 7771 0.987695 + . ID=CGI_10001357; scaffold34794 GLEAN mRNA 7772 20337 0.987695 + . ID=CGI_10001357; scaffold348 GLEAN promoter 1 112 1 + . ID=CGI_10022967; scaffold348 GLEAN mRNA 113 793 1 + . ID=CGI_10022967; scaffold348 GLEAN promoter 2467 3466 0.777767 + . ID=CGI_10022968; scaffold348 TRF Tandem_Repeat 3166 3201 72 + . . scaffold348 GLEAN promoter 3307 4306 0.999068 + . ID=CGI_10022969; scaffold348 GLEAN mRNA 3467 4042 0.777767 + . ID=CGI_10022968; scaffold348 GLEAN mRNA 4307 4717 0.999068 + . ID=CGI_10022969; scaffold348 TRF Tandem_Repeat 9851 10534 1181 + . . scaffold348 WUBlastX DNA_Maverick 12949 14427 874 + . . scaffold348 TRF Tandem_Repeat 41568 41610 86 + . . scaffold348 GLEAN promoter 45971 46970 0.979657 + . ID=CGI_10022970; scaffold348 GLEAN mRNA 46971 56603 0.979657 + . ID=CGI_10022970; scaffold348 TRF Tandem_Repeat 69960 70117 140 + . . scaffold348 TRF Tandem_Repeat 69965 70124 159 + . . scaffold348 TRF Tandem_Repeat 70027 70088 54 + . . scaffold348 TRF Tandem_Repeat 99525 99564 62 + . . scaffold348 TRF Tandem_Repeat 117423 117486 74 + . . scaffold348 GLEAN promoter 128346 129345 0.749493 + . ID=CGI_10022971; scaffold348 GLEAN mRNA 129346 131334 0.749493 + . ID=CGI_10022971; scaffold348 WUBlastX LINE_L1 130235 130462 24 + . . scaffold348 WUBlastX LINE_L2 130459 130857 117 + . . scaffold348 WUBlastX LINE_L1-Tx1 131739 132137 131 + . . scaffold348 WUBlastX LINE_L1 131739 132074 142 + . . scaffold348 WUBlastX LINE_L1-Tx1 132056 132274 100 + . . scaffold348 WUBlastX LINE_L1-Tx1 132257 132823 46 + . . scaffold348 WUBlastX LINE_L1 132631 133812 236 + . . scaffold348 WUBlastX LINE_L1-Tx1 132832 133950 673 + . . scaffold348 WUBlastX LINE_L1-Tx1 133953 134243 117 + . . scaffold348 WUBlastX LINE_L1-Tx1 135317 135532 25 + . . scaffold348 WUBlastX LINE_L1-Tx1 135356 135532 39 + . . scaffold348 WUBlastX DNA_TcMar-Tc1 136251 136853 210 + . . scaffold348 WUBlastX DNA_TcMar-Tc1 136814 137230 103 + . . scaffold348 WUBlastX DNA_TcMar-Tc1 136814 137155 155 + . . scaffold348 WUBlastX DNA_TcMar-Tc1 137145 137246 68 + . . scaffold348 WUBlastX LINE_L1-Tx1 138610 138852 49 - . . scaffold348 TRF Tandem_Repeat 140090 140254 174 + . . scaffold348 TRF Tandem_Repeat 140091 140251 187 + . . scaffold348 TRF Tandem_Repeat 140149 140216 55 + . . scaffold348 TRF Tandem_Repeat 147961 148000 80 + . . scaffold348 WUBlastX LINE_L1-Tx1 148491 148643 49 - . . scaffold348 TRF Tandem_Repeat 150146 150309 199 + . . scaffold348 TRF Tandem_Repeat 150146 150309 175 + . . scaffold348 TRF Tandem_Repeat 150590 150620 53 + . . scaffold348 GLEAN promoter 159739 160738 0.583298 + . ID=CGI_10022972; scaffold348 GLEAN mRNA 160739 182763 0.583298 + . ID=CGI_10022972; scaffold348 TRF Tandem_Repeat 162084 162199 119 + . . scaffold348 WUBlastX LINE_L1-Tx1 165029 165391 66 - . . scaffold348 TRF Tandem_Repeat 170630 170682 97 + . . scaffold348 TRF Tandem_Repeat 173954 174005 104 + . . scaffold348 WUBlastX LINE_Penelope 176054 176308 65 - . . scaffold348 TRF Tandem_Repeat 180195 180243 80 + . . scaffold348 WUBlastX LINE_L1-Tx1 181688 181900 26 - . . scaffold348 GLEAN promoter 190643 191642 0.999949 + . ID=CGI_10022973; scaffold348 GLEAN mRNA 191643 203885 0.999949 + . ID=CGI_10022973; scaffold348 TRF Tandem_Repeat 200275 200323 98 + . . scaffold348 TRF Tandem_Repeat 202364 202485 208 + . . scaffold348 GLEAN promoter 203032 204031 0.499798 + . ID=CGI_10022974; scaffold348 GLEAN mRNA 204032 218386 0.499798 + . ID=CGI_10022974; scaffold348 TRF Tandem_Repeat 211014 211042 58 + . . scaffold348 GLEAN mRNA 214189 222764 1 - . ID=CGI_10022975; scaffold348 TRF Tandem_Repeat 216540 218857 2610 + . . scaffold348 GLEAN promoter 222765 223764 1 - . ID=CGI_10022975; scaffold348 GLEAN promoter 222886 223885 0.485841 + . ID=CGI_10022976; scaffold348 GLEAN mRNA 223886 238921 0.485841 + . ID=CGI_10022976; scaffold348 TRF Tandem_Repeat 233382 233772 269 + . . scaffold348 TRF Tandem_Repeat 237093 237123 53 + . . scaffold348 WUBlastX LINE_L2 239343 239795 81 + . . scaffold348 GLEAN promoter 255894 256893 1 + . ID=CGI_10022977; scaffold348 GLEAN mRNA 256894 257605 1 + . ID=CGI_10022977; scaffold348 TRF Tandem_Repeat 263143 263192 91 + . . scaffold348 TRF Tandem_Repeat 264724 264778 110 + . . scaffold348 TRF Tandem_Repeat 267410 267448 78 + . . scaffold348 TRF Tandem_Repeat 273135 273204 133 + . . scaffold348 TRF Tandem_Repeat 275577 275632 112 + . . scaffold348 TRF Tandem_Repeat 280310 280358 98 + . . scaffold348 GLEAN mRNA 282578 285067 1 - . ID=CGI_10022978; scaffold348 GLEAN promoter 285068 286067 1 - . ID=CGI_10022978; scaffold348 TRF Tandem_Repeat 290178 290219 84 + . . scaffold348 TRF Tandem_Repeat 291604 291643 80 + . . scaffold348 TRF Tandem_Repeat 291643 291684 66 + . . scaffold348 TRF Tandem_Repeat 305420 305461 68 + . . scaffold348 TRF Tandem_Repeat 314562 314654 122 + . . scaffold348 TRF Tandem_Repeat 319100 319143 88 + . . scaffold348 TRF Tandem_Repeat 321328 321376 98 + . . scaffold348 TRF Tandem_Repeat 325182 325212 62 + . . scaffold348 TRF Tandem_Repeat 325225 325264 80 + . . scaffold348 WUBlastX LINE_RTE-X 328306 328617 80 - . . scaffold348 WUBlastX LINE_RTE-X 328321 328560 94 - . . scaffold348 WUBlastX LINE_RTE-X 328324 328758 24 - . . scaffold348 WUBlastX LINE_RTE-X 328327 328692 52 - . . scaffold348 GLEAN promoter 330743 331742 0.639319 + . ID=CGI_10022979; scaffold348 GLEAN mRNA 331743 337541 0.639319 + . ID=CGI_10022979; scaffold348 GLEAN promoter 338377 339376 0.5 + . ID=CGI_10022980; scaffold348 GLEAN mRNA 339377 346452 0.5 + . ID=CGI_10022980; scaffold348 TRF Tandem_Repeat 339814 339842 58 + . . scaffold348 TRF Tandem_Repeat 343774 343813 80 + . . scaffold348 TRF Tandem_Repeat 353030 353061 64 + . . scaffold348 TRF Tandem_Repeat 354479 354510 64 + . . scaffold348 TRF Tandem_Repeat 357837 357888 104 + . . scaffold348 GLEAN promoter 360877 361876 0.549524 + . ID=CGI_10022981; scaffold348 GLEAN mRNA 361877 368349 0.549524 + . ID=CGI_10022981; scaffold348 GLEAN mRNA 375998 398099 0.760293 - . ID=CGI_10022982; scaffold348 TRF Tandem_Repeat 376855 376894 80 + . . scaffold348 GLEAN promoter 398100 399099 0.760293 - . ID=CGI_10022982; scaffold348 GLEAN promoter 398852 399851 1 + . ID=CGI_10022983; scaffold348 GLEAN mRNA 399852 400901 1 + . ID=CGI_10022983; scaffold348 WUBlastX LINE_L2 413517 413696 49 - . . scaffold348 WUBlastX LINE_RTE-BovB 416538 416702 69 - . . scaffold348 TRF Tandem_Repeat 418106 418238 153 + . . scaffold348 TRF Tandem_Repeat 418156 418204 98 + . . scaffold348 GLEAN mRNA 435581 443312 0.999994 - . ID=CGI_10022984; scaffold348 TRF Tandem_Repeat 436771 436830 120 + . . scaffold348 GLEAN promoter 443313 444312 0.999994 - . ID=CGI_10022984; scaffold348 GLEAN promoter 445425 446424 0.794457 + . ID=CGI_10022985; scaffold348 GLEAN mRNA 446425 464513 0.794457 + . ID=CGI_10022985; scaffold348 TRF Tandem_Repeat 446762 446827 132 + . . scaffold348 WUBlastX LINE_CR1 470112 470444 85 + . . scaffold348 WUBlastX LINE_CR1-L2 470175 470447 98 + . . scaffold348 WUBlastX LTR_Pao 471691 471954 135 + . . scaffold348 WUBlastX LTR_Pao 471736 472002 212 + . . scaffold348 GLEAN promoter 473859 474858 0.999917 + . ID=CGI_10022986; scaffold348 GLEAN mRNA 474859 475140 0.999917 + . ID=CGI_10022986; scaffold348 GLEAN promoter 482835 483834 0.999351 + . ID=CGI_10022987; scaffold348 GLEAN mRNA 483835 485649 0.999351 + . ID=CGI_10022987; scaffold348 TRF Tandem_Repeat 484287 484311 50 + . . scaffold348 GLEAN mRNA 486283 486471 0.999506 - . ID=CGI_10022988; scaffold348 GLEAN promoter 486472 487471 0.999506 - . ID=CGI_10022988; scaffold348 TRF Tandem_Repeat 507416 507460 90 + . . scaffold348 TRF Tandem_Repeat 507841 507937 153 + . . scaffold348 TRF Tandem_Repeat 508415 508468 108 + . . scaffold348 TRF Tandem_Repeat 509634 509695 65 + . . scaffold348 TRF Tandem_Repeat 510677 510737 113 + . . scaffold348 TRF Tandem_Repeat 517436 517501 123 + . . scaffold348 TRF Tandem_Repeat 519073 519112 80 + . . scaffold348 WUBlastX LTR_Gypsy-Cigr 521594 522205 178 - . . scaffold348 TRF Tandem_Repeat 523647 523733 174 + . . scaffold348 TRF Tandem_Repeat 525229 525281 97 + . . scaffold348 TRF Tandem_Repeat 527884 527933 55 + . . scaffold348 TRF Tandem_Repeat 527884 527938 65 + . . scaffold348 TRF Tandem_Repeat 527895 527945 68 + . . scaffold348 GLEAN mRNA 530846 540976 1 - . ID=CGI_10022989; scaffold348 GLEAN promoter 540977 541976 1 - . ID=CGI_10022989; scaffold348 GLEAN mRNA 551371 588320 0.727625 - . ID=CGI_10022990; scaffold348 TRF Tandem_Repeat 555050 555577 428 + . . scaffold348 TRF Tandem_Repeat 555160 555775 740 + . . scaffold348 TRF Tandem_Repeat 555623 555775 166 + . . scaffold348 TRF Tandem_Repeat 560091 560378 375 + . . scaffold348 TRF Tandem_Repeat 568941 569675 1044 + . . scaffold348 GLEAN promoter 588321 589320 0.727625 - . ID=CGI_10022990; scaffold348 WUBlastX DNA_Crypton 592805 593539 318 - . . scaffold348 WUBlastX DNA_Crypton 593452 593835 192 - . . scaffold348 TRF Tandem_Repeat 604074 604144 61 + . . scaffold348 TRF Tandem_Repeat 604074 604144 61 + . . scaffold348 GLEAN promoter 615458 616457 1 + . ID=CGI_10022991; scaffold348 TRF Tandem_Repeat 616138 616192 110 + . . scaffold348 GLEAN mRNA 616458 620140 1 + . ID=CGI_10022991; scaffold348 TRF Tandem_Repeat 619125 619190 123 + . . scaffold348 GLEAN promoter 622576 623575 0.998504 + . ID=CGI_10022992; scaffold348 GLEAN mRNA 623576 625447 0.998504 + . ID=CGI_10022992; scaffold348 GLEAN mRNA 632029 644830 0.999375 - . ID=CGI_10022993; scaffold348 TRF Tandem_Repeat 639179 640637 2148 + . . scaffold348 TRF Tandem_Repeat 641012 641047 72 + . . scaffold348 TRF Tandem_Repeat 642723 642779 50 + . . scaffold348 GLEAN promoter 644831 645830 0.999375 - . ID=CGI_10022993; scaffold348 GLEAN promoter 645237 646236 1 + . ID=CGI_10022994; scaffold348 GLEAN mRNA 646237 653477 1 + . ID=CGI_10022994; scaffold348 TRF Tandem_Repeat 650164 650346 157 + . . scaffold348 GLEAN mRNA 657830 662797 1 - . ID=CGI_10022995; scaffold348 GLEAN promoter 662798 663797 1 - . ID=CGI_10022995; scaffold348 GLEAN mRNA 665349 683872 0.48464 - . ID=CGI_10022996; scaffold348 GLEAN promoter 683873 684872 0.48464 - . ID=CGI_10022996; scaffold348 GLEAN mRNA 684421 700265 0.728759 - . ID=CGI_10022997; scaffold348 TRF Tandem_Repeat 693973 694116 87 + . . scaffold348 TRF Tandem_Repeat 693978 694236 202 + . . scaffold348 TRF Tandem_Repeat 693993 694236 215 + . . scaffold348 TRF Tandem_Repeat 693995 694236 175 + . . scaffold348 GLEAN promoter 700266 701265 0.728759 - . ID=CGI_10022997; scaffold348 GLEAN mRNA 700339 704575 0.899195 - . ID=CGI_10022998; scaffold348 GLEAN promoter 704576 705575 0.899195 - . ID=CGI_10022998; scaffold348 GLEAN mRNA 704794 707929 1 - . ID=CGI_10022999; scaffold348 GLEAN promoter 707930 708929 1 - . ID=CGI_10022999; scaffold348 TRF Tandem_Repeat 710991 711069 149 + . . scaffold348 WUBlastX LINE_RTE-X 712430 712900 24 + . . scaffold348 WUBlastX LINE_RTE-X 712643 712837 42 + . . scaffold348 GLEAN mRNA 714029 714250 0.999996 - . ID=CGI_10023000; scaffold348 GLEAN promoter 714251 715250 0.999996 - . ID=CGI_10023000; scaffold348 GLEAN mRNA 715076 738533 0.987905 - . ID=CGI_10023001; scaffold348 TRF Tandem_Repeat 716580 716658 151 + . . scaffold348 WUBlastX DNA_Kolobok 720201 720326 59 + . . scaffold348 TRF Tandem_Repeat 723420 723457 76 + . . scaffold348 TRF Tandem_Repeat 724983 725046 128 + . . scaffold348 TRF Tandem_Repeat 731777 731809 52 + . . scaffold348 GLEAN promoter 738534 739533 0.987905 - . ID=CGI_10023001; scaffold348 TRF Tandem_Repeat 740760 740800 82 + . . scaffold348 GLEAN mRNA 744300 745549 0.543424 - . ID=CGI_10023002; scaffold348 GLEAN promoter 745550 746549 0.543424 - . ID=CGI_10023002; scaffold348 TRF Tandem_Repeat 756947 756984 67 + . . scaffold348 TRF Tandem_Repeat 758665 758765 202 + . . scaffold348 TRF Tandem_Repeat 758763 758848 82 + . . scaffold348 GLEAN mRNA 760956 765791 1 - . ID=CGI_10023003; scaffold348 GLEAN promoter 765792 766791 1 - . ID=CGI_10023003; scaffold348 GLEAN mRNA 784953 786365 0.499853 - . ID=CGI_10023005; scaffold348 GLEAN promoter 786366 787365 0.499853 - . ID=CGI_10023005; scaffold348 GLEAN mRNA 793064 793609 0.499801 - . ID=CGI_10023006; scaffold348 GLEAN promoter 793610 794609 0.499801 - . ID=CGI_10023006; scaffold34832 WUBlastX LINE_RTE-X 5005 5217 42 + . . scaffold34832 TRF Tandem_Repeat 14588 14851 395 + . . scaffold34832 TRF Tandem_Repeat 15857 15883 54 + . . scaffold34850 GLEAN promoter 366 1365 1 + . ID=CGI_10001360; scaffold34850 GLEAN mRNA 1366 3396 1 + . ID=CGI_10001360; scaffold34850 GLEAN mRNA 3873 9889 0.998467 - . ID=CGI_10001361; scaffold34850 GLEAN promoter 9890 10889 0.998467 - . ID=CGI_10001361; scaffold34860 GLEAN mRNA 1216 2874 1 - . ID=CGI_10001364; scaffold34860 GLEAN promoter 2875 3874 1 - . ID=CGI_10001364; scaffold34860 GLEAN mRNA 15097 20323 1 - . ID=CGI_10001365; scaffold34860 GLEAN promoter 20324 20837 1 - . ID=CGI_10001365; scaffold34868 GLEAN mRNA 2987 12736 0.333726 - . ID=CGI_10001366; scaffold34868 GLEAN promoter 12737 13736 0.333726 - . ID=CGI_10001366; scaffold34872 WUBlastX LTR_Pao 5 1045 271 - . . scaffold34872 WUBlastX DNA_Sola 1980 2822 243 - . . scaffold34872 WUBlastX DNA_Sola 2037 2666 262 - . . scaffold34872 WUBlastX DNA_Sola 2647 3306 169 - . . scaffold34872 WUBlastX DNA_Sola 2698 3081 190 - . . scaffold34872 WUBlastX DNA_Sola 3287 3493 27 - . . scaffold34872 WUBlastX DNA_Sola 3287 3391 40 - . . scaffold34872 WUBlastX DNA_Harbinger 17205 17657 202 - . . scaffold34872 TRF Tandem_Repeat 18902 19219 447 + . . scaffold34882 WUBlastX LINE_CR1 1102 1506 55 + . . scaffold34882 WUBlastX LINE_CR1 1228 1518 70 + . . scaffold34882 WUBlastX LINE_CR1 1273 1566 93 + . . scaffold34882 WUBlastX LINE_CR1-L2 1279 1506 100 + . . scaffold34882 WUBlastX LINE_CR1-L2 1476 1766 58 + . . scaffold34882 TRF Tandem_Repeat 15453 15533 162 + . . scaffold34888 WUBlastX DNA_Maverick 1885 2118 22 - . . scaffold34888 WUBlastX LINE_L1 7241 7408 70 + . . scaffold34888 WUBlastX LINE_L1-Tx1 7253 7384 91 + . . scaffold34888 WUBlastX LINE_L1-Tx1 7384 7560 67 + . . scaffold34888 WUBlastX LINE_L1-Tx1 7542 7856 160 + . . scaffold34888 WUBlastX LINE_L1 7858 7965 43 + . . scaffold34888 WUBlastX LINE_L1-Tx1 7858 7944 49 + . . scaffold34888 WUBlastX LINE_L1-Tx1 7973 8818 58 + . . scaffold34888 WUBlastX LINE_L1-Tx1 8178 9395 274 + . . scaffold34888 WUBlastX LINE_DRE 10148 10201 25 + . . scaffold34894 WUBlastX DNA_Harbinger 1378 1644 123 + . . scaffold34894 WUBlastX DNA_Harbinger 1417 1641 155 + . . scaffold34894 TRF Tandem_Repeat 9775 9808 59 + . . scaffold34894 TRF Tandem_Repeat 9778 9821 61 + . . scaffold34894 WUBlastX LINE_RTE-BovB 9935 10096 83 + . . scaffold34894 WUBlastX LINE_RTE-BovB 10065 10232 86 + . . scaffold34894 WUBlastX LINE_Penelope 14393 14467 23 - . . scaffold34894 WUBlastX LINE_Penelope 14491 16152 798 - . . scaffold34894 WUBlastX LINE_Penelope 16187 16459 48 - . . scaffold34894 WUBlastX LINE_Penelope 16202 16405 57 - . . scaffold34894 WUBlastX LINE_Penelope 16202 16357 84 - . . scaffold34898 GLEAN promoter 2979 3978 1 + . ID=CGI_10001368; scaffold34898 GLEAN mRNA 3979 4907 1 + . ID=CGI_10001368; scaffold34898 GLEAN mRNA 9277 17690 1 - . ID=CGI_10001369; scaffold34898 GLEAN promoter 17691 18690 1 - . ID=CGI_10001369; scaffold34898 GLEAN mRNA 19006 19194 0.618241 - . ID=CGI_10001370; scaffold34898 GLEAN promoter 19195 20194 0.618241 - . ID=CGI_10001370; scaffold34910 GLEAN mRNA 2779 3186 1 - . ID=CGI_10001376; scaffold34910 GLEAN promoter 3187 4186 1 - . ID=CGI_10001376; scaffold34910 WUBlastX LTR_Gypsy 3687 3968 48 - . . scaffold34910 WUBlastX LTR_Gypsy 3777 4538 488 - . . scaffold34910 WUBlastX LTR_Gypsy-Cigr 4529 6091 944 - . . scaffold34910 WUBlastX LTR_Gypsy-Cigr 6048 7373 444 - . . scaffold34910 WUBlastX LTR_Copia 7379 7774 67 - . . scaffold34910 WUBlastX LTR_Gypsy-Cigr 7780 8118 150 - . . scaffold34910 WUBlastX LTR_Gypsy 7801 8196 28 - . . scaffold34910 WUBlastX LINE_L1 10408 10620 39 - . . scaffold34910 TRF Tandem_Repeat 20481 20544 128 + . . scaffold34932 GLEAN promoter 1 175 0.544747 + . ID=CGI_10001373; scaffold34932 GLEAN mRNA 176 20443 0.544747 + . ID=CGI_10001373; scaffold34932 GLEAN mRNA 10730 20947 1 - . ID=CGI_10001374; scaffold34932 GLEAN promoter 20948 21045 1 - . ID=CGI_10001374; scaffold34942 WUBlastX LTR_Pao 285 521 27 + . . scaffold34942 WUBlastX LTR_Pao 432 521 69 + . . scaffold34942 WUBlastX LTR_Pao 454 810 116 + . . scaffold34942 WUBlastX LTR_Pao 520 2355 1454 + . . scaffold34942 WUBlastX LTR_Pao 2352 2816 463 + . . scaffold34942 WUBlastX LTR_Pao 2819 3340 454 + . . scaffold34942 WUBlastX LTR_Pao 2837 3463 71 + . . scaffold34942 WUBlastX LTR_Gypsy 3895 3975 22 + . . scaffold34942 WUBlastX LTR_Gypsy 3948 4286 200 + . . scaffold34942 GLEAN mRNA 4327 15160 0.738571 - . ID=CGI_10001379; scaffold34942 TRF Tandem_Repeat 7656 7737 146 + . . scaffold34942 GLEAN promoter 9169 10168 1 + . ID=CGI_10001380; scaffold34942 GLEAN mRNA 10169 10981 1 + . ID=CGI_10001380; scaffold34942 WUBlastX DNA_Kolobok 10169 10333 21 + . . scaffold34942 WUBlastX DNA_Kolobok 10817 10957 38 + . . scaffold34942 WUBlastX DNA_Kolobok 11334 11483 96 - . . scaffold34942 WUBlastX DNA_Kolobok 11627 11788 73 - . . scaffold34942 WUBlastX DNA_Kolobok 11862 12092 50 - . . scaffold34942 WUBlastX DNA_Kolobok 11895 12086 64 - . . scaffold34942 WUBlastX DNA_hAT-Tip100 14840 15160 75 - . . scaffold34942 WUBlastX DNA_hAT-Tip100 14903 15160 89 - . . scaffold34942 GLEAN promoter 15161 16160 0.738571 - . ID=CGI_10001379; scaffold34942 TRF Tandem_Repeat 17861 17910 100 + . . scaffold34942 WUBlastX LINE_RTE-X 20300 20446 50 + . . scaffold34942 WUBlastX LINE_RTE 20407 20736 74 + . . scaffold34942 WUBlastX LINE_RTE-X 20488 20829 111 + . . scaffold34942 WUBlastX LINE_CR1 20503 20940 33 + . . scaffold34952 GLEAN mRNA 11412 16717 0.474367 - . ID=CGI_10001381; scaffold34952 GLEAN promoter 16718 17717 0.474367 - . ID=CGI_10001381; scaffold34958 GLEAN mRNA 729 11395 0.999623 - . ID=CGI_10001383; scaffold34958 GLEAN promoter 6102 7101 1 + . ID=CGI_10001384; scaffold34958 GLEAN mRNA 7102 16397 1 + . ID=CGI_10001384; scaffold34958 GLEAN promoter 11396 12395 0.999623 - . ID=CGI_10001383; scaffold34958 GLEAN promoter 18519 19518 0.999984 + . ID=CGI_10001385; scaffold34958 GLEAN mRNA 19519 19764 0.999984 + . ID=CGI_10001385; scaffold34968 GLEAN mRNA 7517 13408 0.987252 - . ID=CGI_10001390; scaffold34968 GLEAN promoter 13409 14408 0.987252 - . ID=CGI_10001390; scaffold34968 TRF Tandem_Repeat 16338 16457 125 + . . scaffold34968 WUBlastX LINE_Penelope 19929 20105 45 - . . scaffold34968 WUBlastX LINE_Penelope 20122 20277 108 - . . scaffold34968 WUBlastX LINE_Penelope 20212 20289 42 - . . scaffold34972 GLEAN mRNA 1853 11754 1 - . ID=CGI_10001391; scaffold34972 GLEAN promoter 11755 12754 1 - . ID=CGI_10001391; scaffold34986 GLEAN mRNA 17768 17965 0.618241 - . ID=CGI_10001386; scaffold34986 GLEAN promoter 17966 18965 0.618241 - . ID=CGI_10001386; scaffold34994 GLEAN mRNA 2797 19078 0.989545 - . ID=CGI_10001400; scaffold34994 GLEAN promoter 19079 20078 0.989545 - . ID=CGI_10001400; scaffold35 TRF Tandem_Repeat 1166 1194 58 + . . scaffold35 WUBlastX DNA_IS4EU 1407 1577 105 - . . scaffold35 WUBlastX DNA_IS4EU 1527 1796 118 - . . scaffold35 WUBlastX DNA_IS4EU 1896 2264 85 - . . scaffold35 WUBlastX DNA_Kolobok-IS4 2248 2391 32 - . . scaffold35 WUBlastX DNA_IS4EU 2314 2520 22 - . . scaffold35 WUBlastX DNA_Harbinger 4209 4589 193 + . . scaffold35 WUBlastX DNA_Harbinger 6910 7056 70 - . . scaffold35 TRF Tandem_Repeat 10085 10760 813 + . . scaffold35 TRF Tandem_Repeat 11925 11967 59 + . . scaffold35 WUBlastX DNA_hAT-Ac 14312 14440 44 + . . scaffold35 WUBlastX DNA_hAT-Ac 14569 14790 56 + . . scaffold350 WUBlastX DNA_Academ 965 1123 27 - . . scaffold350 WUBlastX DNA_Academ 1019 1123 33 - . . scaffold350 GLEAN mRNA 1105 3206 0.996578 - . ID=CGI_10000780; scaffold350 WUBlastX DNA_Academ 1141 1863 356 - . . scaffold350 WUBlastX DNA_Academ 1810 2073 89 - . . scaffold350 WUBlastX DNA_Academ 1816 2337 89 - . . scaffold350 GLEAN promoter 3207 4206 0.996578 - . ID=CGI_10000780; scaffold35004 GLEAN promoter 1 108 1 + . ID=CGI_10001393; scaffold35004 GLEAN mRNA 109 951 1 + . ID=CGI_10001393; scaffold35004 GLEAN promoter 17894 18893 1 + . ID=CGI_10001394; scaffold35004 GLEAN mRNA 18894 21385 1 + . ID=CGI_10001394; scaffold35004 WUBlastX LINE_RTE-X 20135 20323 82 - . . scaffold35004 WUBlastX LINE_RTE-X 20171 20371 43 - . . scaffold35004 WUBlastX LINE_RTE-X 20174 20329 98 - . . scaffold35014 GLEAN promoter 1348 2347 0.999998 + . ID=CGI_10001387; scaffold35014 GLEAN mRNA 2348 5941 0.999998 + . ID=CGI_10001387; scaffold35014 TRF Tandem_Repeat 3090 3286 109 + . . scaffold35014 TRF Tandem_Repeat 3169 3320 58 + . . scaffold35014 GLEAN promoter 4947 5946 0.702383 + . ID=CGI_10001388; scaffold35014 GLEAN mRNA 5947 8043 0.702383 + . ID=CGI_10001388; scaffold35014 TRF Tandem_Repeat 7333 7455 228 + . . scaffold35014 GLEAN promoter 8316 9315 0.996281 + . ID=CGI_10001389; scaffold35014 GLEAN mRNA 9316 21495 0.996281 + . ID=CGI_10001389; scaffold35014 WUBlastX DNA_PiggyBac 13162 13533 80 + . . scaffold35014 WUBlastX DNA_PiggyBac 13970 14110 65 + . . scaffold35014 WUBlastX DNA_PiggyBac 14617 14799 77 + . . scaffold35014 WUBlastX DNA_PiggyBac 14617 14832 55 + . . scaffold35014 WUBlastX DNA_PiggyBac 15391 15504 27 + . . scaffold35014 WUBlastX DNA_PiggyBac 15397 15465 48 + . . scaffold35014 WUBlastX DNA_PiggyBac 15939 16082 36 + . . scaffold35014 WUBlastX DNA_PiggyBac 15972 16160 83 + . . scaffold35014 WUBlastX DNA_PiggyBac 16241 16519 113 + . . scaffold35030 GLEAN promoter 2556 3555 0.272381 + . ID=CGI_10001401; scaffold35030 GLEAN mRNA 3556 17630 0.272381 + . ID=CGI_10001401; scaffold35030 GLEAN promoter 17575 18574 1 + . ID=CGI_10001402; scaffold35030 GLEAN mRNA 18575 19642 1 + . ID=CGI_10001402; scaffold35034 GLEAN promoter 6671 7670 0.999676 + . ID=CGI_10001408; scaffold35034 GLEAN mRNA 7671 18613 0.999676 + . ID=CGI_10001408; scaffold35036 GLEAN mRNA 2073 9849 1 - . ID=CGI_10001398; scaffold35036 GLEAN promoter 9850 10849 1 - . ID=CGI_10001398; scaffold35036 GLEAN promoter 10324 11323 1 + . ID=CGI_10001399; scaffold35036 GLEAN mRNA 11324 20202 1 + . ID=CGI_10001399; scaffold35066 GLEAN mRNA 7620 10614 1 - . ID=CGI_10001415; scaffold35066 GLEAN promoter 10615 11614 1 - . ID=CGI_10001415; scaffold35070 TRF Tandem_Repeat 5855 5884 60 + . . scaffold35070 TRF Tandem_Repeat 5997 6046 100 + . . scaffold35070 WUBlastX DNA_PiggyBac 9615 10052 69 + . . scaffold35070 WUBlastX DNA_PiggyBac 9846 10046 82 + . . scaffold35070 WUBlastX DNA_PiggyBac 10523 10657 42 + . . scaffold35070 WUBlastX DNA_PiggyBac 10553 10696 63 + . . scaffold35070 WUBlastX DNA_PiggyBac 10801 11103 69 + . . scaffold35070 WUBlastX DNA_PiggyBac 10870 11037 90 + . . scaffold35070 TRF Tandem_Repeat 11354 11383 60 + . . scaffold35070 WUBlastX DNA_PiggyBac 11497 11652 52 + . . scaffold35070 WUBlastX DNA_PiggyBac 11707 11946 21 + . . scaffold35070 WUBlastX DNA_PiggyBac 11761 11886 31 + . . scaffold35070 WUBlastX DNA_PiggyBac 11782 11946 84 + . . scaffold35070 WUBlastX DNA_PiggyBac 12199 12459 39 + . . scaffold35070 WUBlastX DNA_PiggyBac 12241 12660 134 + . . scaffold35070 WUBlastX DNA_PiggyBac 12626 12703 23 + . . scaffold35070 TRF Tandem_Repeat 13185 14037 896 + . . scaffold35070 WUBlastX DNA_Harbinger 16934 17749 129 + . . scaffold35070 WUBlastX DNA_Harbinger 17018 17662 309 + . . scaffold35072 TRF Tandem_Repeat 1798 2358 770 + . . scaffold35072 TRF Tandem_Repeat 2890 3494 1005 + . . scaffold35072 TRF Tandem_Repeat 3733 4458 1027 + . . scaffold35072 WUBlastX LTR_Copia 16343 16435 20 - . . scaffold35072 WUBlastX LTR_Gypsy 16369 17655 437 - . . scaffold35072 WUBlastX LTR_Gypsy 16573 18687 1396 - . . scaffold35072 WUBlastX LTR_Caulimoviru 18687 19244 213 - . . scaffold35072 WUBlastX LTR_Gypsy 18699 19127 460 - . . scaffold35072 TRF Tandem_Repeat 19909 20216 253 + . . scaffold35084 GLEAN mRNA 3003 10199 0.877179 - . ID=CGI_10001417; scaffold35084 GLEAN promoter 10200 11199 0.877179 - . ID=CGI_10001417; scaffold35084 WUBlastX LTR_Gypsy 10974 11090 38 + . . scaffold35084 WUBlastX LTR_Gypsy 11016 11117 31 + . . scaffold35084 WUBlastX LTR_Gypsy 11172 11444 75 + . . scaffold35084 WUBlastX LTR_Gypsy 11214 11444 86 + . . scaffold35084 TRF Tandem_Repeat 21301 21417 78 + . . scaffold35084 TRF Tandem_Repeat 21303 21414 61 + . . scaffold35094 WUBlastX LINE_L1-Tx1 21483 22484 204 - . . scaffold351 TRF Tandem_Repeat 3618 3695 79 + . . scaffold351 TRF Tandem_Repeat 8926 9044 87 + . . scaffold351 TRF Tandem_Repeat 10564 10645 119 + . . scaffold351 GLEAN mRNA 12454 15049 1 - . ID=CGI_10022585; scaffold351 GLEAN promoter 15050 16049 1 - . ID=CGI_10022585; scaffold351 GLEAN mRNA 23760 26862 0.999999 - . ID=CGI_10022586; scaffold351 GLEAN promoter 26863 27862 0.999999 - . ID=CGI_10022586; scaffold351 GLEAN promoter 28711 29710 0.481187 + . ID=CGI_10022587; scaffold351 GLEAN mRNA 29711 29950 0.481187 + . ID=CGI_10022587; scaffold351 GLEAN promoter 30038 31037 0.588781 + . ID=CGI_10022588; scaffold351 GLEAN mRNA 31038 42611 0.588781 + . ID=CGI_10022588; scaffold351 TRF Tandem_Repeat 37010 37043 50 + . . scaffold351 GLEAN mRNA 42889 43095 0.776794 - . ID=CGI_10022589; scaffold351 GLEAN promoter 43096 44095 0.776794 - . ID=CGI_10022589; scaffold351 TRF Tandem_Repeat 43778 43814 74 + . . scaffold351 TRF Tandem_Repeat 46708 46742 70 + . . scaffold351 TRF Tandem_Repeat 73662 74427 627 + . . scaffold351 TRF Tandem_Repeat 73740 74410 800 + . . scaffold351 TRF Tandem_Repeat 76135 76173 69 + . . scaffold351 TRF Tandem_Repeat 76450 76546 126 + . . scaffold351 GLEAN mRNA 80647 91796 0.490582 - . ID=CGI_10022590; scaffold351 WUBlastX LTR_Ngaro 88836 89174 57 - . . scaffold351 WUBlastX LTR_Ngaro 88836 89093 64 - . . scaffold351 GLEAN promoter 91797 92796 0.490582 - . ID=CGI_10022590; scaffold351 GLEAN mRNA 94305 104490 0.817501 - . ID=CGI_10022591; scaffold351 WUBlastX LINE_Penelope 101852 102289 103 - . . scaffold351 WUBlastX LINE_Penelope 102286 102585 82 - . . scaffold351 WUBlastX LINE_Penelope 102582 102638 26 - . . scaffold351 WUBlastX LINE_Penelope 102671 103180 169 + . . scaffold351 WUBlastX LINE_Penelope 102689 103408 167 + . . scaffold351 WUBlastX LINE_Penelope 103402 103536 34 + . . scaffold351 GLEAN promoter 104491 105490 0.817501 - . ID=CGI_10022591; scaffold351 GLEAN mRNA 104865 112502 0.552461 - . ID=CGI_10022592; scaffold351 TRF Tandem_Repeat 105322 105430 191 + . . scaffold351 TRF Tandem_Repeat 109501 109543 86 + . . scaffold351 GLEAN promoter 112503 113502 0.552461 - . ID=CGI_10022592; scaffold351 TRF Tandem_Repeat 112583 112628 92 + . . scaffold351 GLEAN mRNA 113760 135400 0.462972 - . ID=CGI_10022593; scaffold351 TRF Tandem_Repeat 121390 121434 51 + . . scaffold351 TRF Tandem_Repeat 129817 129863 58 + . . scaffold351 GLEAN promoter 135401 136400 0.462972 - . ID=CGI_10022593; scaffold351 GLEAN mRNA 166564 167184 0.588917 - . ID=CGI_10022594; scaffold351 GLEAN promoter 167185 168184 0.588917 - . ID=CGI_10022594; scaffold351 TRF Tandem_Repeat 175010 175034 50 + . . scaffold351 WUBlastX RC_Helitron 176999 177574 71 - . . scaffold351 GLEAN promoter 181214 182213 0.847521 + . ID=CGI_10022595; scaffold351 GLEAN mRNA 182214 186264 0.847521 + . ID=CGI_10022595; scaffold351 WUBlastX LTR_Copia 184820 184975 25 - . . scaffold351 WUBlastX LTR_ERV1 184943 185146 20 - . . scaffold351 WUBlastX LTR_Gypsy 185051 185131 25 - . . scaffold351 WUBlastX LTR_ERVK 185203 185364 34 - . . scaffold351 GLEAN promoter 187101 188100 0.986676 + . ID=CGI_10022596; scaffold351 GLEAN mRNA 188101 189207 0.986676 + . ID=CGI_10022596; scaffold351 WUBlastX DNA_Maverick 189398 189982 322 + . . scaffold351 WUBlastX DNA_Maverick 195026 196459 474 - . . scaffold351 WUBlastX DNA_Maverick 196528 196824 183 - . . scaffold351 WUBlastX LTR_Gypsy 203620 204579 368 - . . scaffold351 WUBlastX LTR_Gypsy 204500 204949 293 - . . scaffold351 WUBlastX LTR_Gypsy 204954 206273 479 - . . scaffold351 WUBlastX LTR_Gypsy 204960 206513 216 - . . scaffold351 GLEAN promoter 209983 210982 0.740415 + . ID=CGI_10022597; scaffold351 GLEAN mRNA 210983 211156 0.740415 + . ID=CGI_10022597; scaffold351 WUBlastX LTR_Gypsy 211173 211412 151 - . . scaffold351 WUBlastX LTR_Ngaro 223463 223909 166 - . . scaffold351 WUBlastX LTR_Ngaro 223909 224091 53 - . . scaffold351 TRF Tandem_Repeat 224332 225458 1623 + . . scaffold351 WUBlastX LTR_Ngaro 225601 225834 144 - . . scaffold351 WUBlastX LTR_Ngaro 225849 226097 85 - . . scaffold351 WUBlastX LTR_Ngaro 225852 226052 109 - . . scaffold351 WUBlastX LTR_Ngaro 226165 226251 32 - . . scaffold351 WUBlastX LTR_Ngaro 226266 226514 85 - . . scaffold351 WUBlastX LTR_Ngaro 226269 226469 109 - . . scaffold351 WUBlastX DNA_hAT-Tip100 228005 229984 1238 - . . scaffold351 WUBlastX DNA_Maverick 231956 232159 102 - . . scaffold351 WUBlastX DNA_Maverick 232181 233458 672 - . . scaffold351 WUBlastX DNA_Maverick 233889 234134 70 - . . scaffold351 WUBlastX DNA_Maverick 233898 234233 63 - . . scaffold351 WUBlastX DNA_Maverick 234213 234347 45 - . . scaffold351 WUBlastX DNA_Maverick 234380 234868 224 - . . scaffold351 WUBlastX DNA_Maverick 234709 235347 239 - . . scaffold351 WUBlastX DNA_Maverick 234907 235344 259 - . . scaffold351 WUBlastX LTR_Gypsy 235328 235789 31 - . . scaffold351 WUBlastX DNA_Maverick 235370 235684 143 - . . scaffold351 WUBlastX LTR_Copia 236179 236250 22 - . . scaffold351 WUBlastX LINE_L1-Tx1 236230 236970 73 - . . scaffold351 WUBlastX LINE_L2 236293 236853 103 - . . scaffold351 TRF Tandem_Repeat 242937 243643 857 + . . scaffold351 TRF Tandem_Repeat 250991 251070 65 + . . scaffold351 WUBlastX DNA_IS4EU 252923 253189 44 - . . scaffold351 WUBlastX DNA_IS4EU 252932 253153 55 - . . scaffold351 WUBlastX LTR_DIRS 253107 253229 27 + . . scaffold351 WUBlastX LTR_DIRS 253237 253398 44 + . . scaffold351 WUBlastX LTR_Ngaro 255665 256150 35 - . . scaffold351 TRF Tandem_Repeat 258436 258524 79 + . . scaffold351 TRF Tandem_Repeat 258468 258525 53 + . . scaffold351 TRF Tandem_Repeat 260364 260399 72 + . . scaffold351 WUBlastX DNA_IS4EU 266602 266793 56 - . . scaffold351 GLEAN mRNA 279768 281414 0.91803 - . ID=CGI_10022600; scaffold351 GLEAN promoter 281415 282414 0.91803 - . ID=CGI_10022600; scaffold351 WUBlastX DNA_Maverick 282355 282585 36 + . . scaffold351 WUBlastX DNA_Maverick 282499 282624 51 + . . scaffold351 WUBlastX DNA_Maverick 282687 283391 80 + . . scaffold351 WUBlastX DNA_Maverick 282867 283391 105 + . . scaffold351 WUBlastX DNA_Maverick 283387 284979 922 + . . scaffold351 WUBlastX DNA_Maverick 284990 285430 235 + . . scaffold351 WUBlastX DNA_Maverick 285581 285898 79 - . . scaffold351 WUBlastX DNA_Maverick 285790 286041 89 - . . scaffold351 WUBlastX DNA_Maverick 285877 286041 109 - . . scaffold351 WUBlastX DNA_Maverick 286046 286498 248 - . . scaffold351 WUBlastX DNA_Maverick 287035 287622 375 - . . scaffold351 WUBlastX DNA_Maverick 287221 287733 55 - . . scaffold351 GLEAN promoter 287286 288285 1 + . ID=CGI_10022601; scaffold351 GLEAN mRNA 288286 288705 1 + . ID=CGI_10022601; scaffold351 GLEAN mRNA 289395 289616 0.481188 - . ID=CGI_10022602; scaffold351 GLEAN promoter 289617 290616 0.481188 - . ID=CGI_10022602; scaffold351 WUBlastX DNA_Harbinger 297285 297425 54 + . . scaffold351 GLEAN mRNA 298327 302475 0.747441 - . ID=CGI_10022603; scaffold351 WUBlastX DNA_Maverick 298878 298973 27 + . . scaffold351 WUBlastX DNA_Maverick 298997 299506 124 + . . scaffold351 WUBlastX LTR_Pao 302245 302430 40 - . . scaffold351 GLEAN promoter 302476 303475 0.747441 - . ID=CGI_10022603; scaffold351 WUBlastX LTR_Pao 302486 302860 220 - . . scaffold351 WUBlastX LTR_Pao 302841 303122 132 - . . scaffold351 GLEAN mRNA 303764 304054 0.888871 - . ID=CGI_10022604; scaffold351 GLEAN promoter 304055 305054 0.888871 - . ID=CGI_10022604; scaffold351 GLEAN promoter 305790 306789 0.777625 + . ID=CGI_10022605; scaffold351 GLEAN mRNA 306790 315103 0.777625 + . ID=CGI_10022605; scaffold351 WUBlastX DNA_Sola 306897 307292 68 + . . scaffold351 TRF Tandem_Repeat 309746 309825 151 + . . scaffold351 WUBlastX DNA_Sola 311679 312191 175 + . . scaffold351 WUBlastX LINE_L1-Tx1 312738 313628 169 - . . scaffold351 WUBlastX DNA_Sola 313573 314778 108 + . . scaffold351 WUBlastX DNA_Sola 313642 314280 210 + . . scaffold351 WUBlastX DNA_Sola 314933 315085 108 + . . scaffold351 WUBlastX DNA_Sola 314936 315118 78 + . . scaffold351 WUBlastX DNA_Sola 315198 315284 22 + . . scaffold351 WUBlastX DNA_Sola 315541 315825 48 + . . scaffold351 WUBlastX DNA_Sola 315604 315894 44 + . . scaffold351 WUBlastX DNA_Sola 315625 315825 96 + . . scaffold351 TRF Tandem_Repeat 322171 322211 82 + . . scaffold351 TRF Tandem_Repeat 323194 324256 1766 + . . scaffold351 TRF Tandem_Repeat 341293 341352 50 + . . scaffold351 TRF Tandem_Repeat 341294 341354 56 + . . scaffold351 GLEAN promoter 355595 356594 0.544498 + . ID=CGI_10022606; scaffold351 GLEAN mRNA 356595 372734 0.544498 + . ID=CGI_10022606; scaffold351 TRF Tandem_Repeat 369687 369722 72 + . . scaffold351 TRF Tandem_Repeat 382607 382674 64 + . . scaffold351 TRF Tandem_Repeat 399258 399358 50 + . . scaffold351 TRF Tandem_Repeat 399269 399332 60 + . . scaffold351 TRF Tandem_Repeat 399269 399360 67 + . . scaffold351 TRF Tandem_Repeat 399326 399386 61 + . . scaffold351 WUBlastX LTR_Ngaro 401373 401567 70 + . . scaffold351 WUBlastX DNA_TcMar-Marin 402354 402479 56 - . . scaffold351 TRF Tandem_Repeat 409060 409095 72 + . . scaffold351 TRF Tandem_Repeat 409285 409446 310 + . . scaffold351 GLEAN promoter 411205 412204 1 + . ID=CGI_10022607; scaffold351 GLEAN mRNA 412205 417032 1 + . ID=CGI_10022607; scaffold351 TRF Tandem_Repeat 412408 412466 54 + . . scaffold351 TRF Tandem_Repeat 412584 412620 74 + . . scaffold351 TRF Tandem_Repeat 414761 414844 61 + . . scaffold351 TRF Tandem_Repeat 414799 414849 57 + . . scaffold351 TRF Tandem_Repeat 417552 417746 149 + . . scaffold351 GLEAN promoter 419757 420756 0.999985 + . ID=CGI_10022608; scaffold351 GLEAN mRNA 420757 423992 0.999985 + . ID=CGI_10022608; scaffold351 GLEAN promoter 425545 426544 0.999949 + . ID=CGI_10022609; scaffold351 GLEAN mRNA 426545 434176 0.999949 + . ID=CGI_10022609; scaffold351 TRF Tandem_Repeat 435649 435700 104 + . . scaffold351 TRF Tandem_Repeat 447973 447999 54 + . . scaffold351 TRF Tandem_Repeat 449111 449222 224 + . . scaffold351 TRF Tandem_Repeat 449262 449302 82 + . . scaffold351 TRF Tandem_Repeat 451572 451962 437 + . . scaffold351 TRF Tandem_Repeat 451572 452649 1238 + . . scaffold351 TRF Tandem_Repeat 451759 452107 404 + . . scaffold351 TRF Tandem_Repeat 451972 452437 646 + . . scaffold351 TRF Tandem_Repeat 471643 472159 397 + . . scaffold351 WUBlastX LINE_L1-Tx1 486683 486748 20 - . . scaffold351 WUBlastX LINE_L1-Tx1 486741 486881 69 - . . scaffold351 TRF Tandem_Repeat 497907 497959 106 + . . scaffold351 GLEAN mRNA 540168 560891 0.879054 - . ID=CGI_10022610; scaffold351 GLEAN promoter 560892 561891 0.879054 - . ID=CGI_10022610; scaffold351 GLEAN mRNA 562700 573430 0.999463 - . ID=CGI_10022611; scaffold351 TRF Tandem_Repeat 564332 564730 461 + . . scaffold351 TRF Tandem_Repeat 564332 564697 448 + . . scaffold351 TRF Tandem_Repeat 566316 566349 50 + . . scaffold351 GLEAN promoter 572716 573715 1 + . ID=CGI_10022612; scaffold351 GLEAN promoter 573431 574430 0.999463 - . ID=CGI_10022611; scaffold351 GLEAN mRNA 573716 578022 1 + . ID=CGI_10022612; scaffold351 TRF Tandem_Repeat 576130 576173 88 + . . scaffold351 TRF Tandem_Repeat 576262 576295 68 + . . scaffold351 TRF Tandem_Repeat 581043 581113 88 + . . scaffold351 TRF Tandem_Repeat 581043 581117 105 + . . scaffold351 TRF Tandem_Repeat 581125 581926 1019 + . . scaffold351 TRF Tandem_Repeat 582466 582536 88 + . . scaffold351 TRF Tandem_Repeat 582466 582540 105 + . . scaffold351 TRF Tandem_Repeat 582548 583349 1019 + . . scaffold351 TRF Tandem_Repeat 583629 583660 64 + . . scaffold351 GLEAN promoter 585267 586266 0.992278 + . ID=CGI_10022613; scaffold351 GLEAN mRNA 586267 587685 0.992278 + . ID=CGI_10022613; scaffold351 GLEAN mRNA 588823 593284 1 - . ID=CGI_10022614; scaffold351 TRF Tandem_Repeat 590379 590409 62 + . . scaffold351 GLEAN promoter 592544 593543 0.990656 + . ID=CGI_10022615; scaffold351 GLEAN promoter 593285 594284 1 - . ID=CGI_10022614; scaffold351 GLEAN mRNA 593544 606475 0.990656 + . ID=CGI_10022615; scaffold351 TRF Tandem_Repeat 605368 605449 92 + . . scaffold351 GLEAN mRNA 608031 628045 0.972747 - . ID=CGI_10022616; scaffold351 TRF Tandem_Repeat 610331 610526 189 + . . scaffold351 TRF Tandem_Repeat 610492 610683 339 + . . scaffold351 TRF Tandem_Repeat 613480 613641 139 + . . scaffold351 TRF Tandem_Repeat 626892 626963 135 + . . scaffold351 GLEAN promoter 628046 629045 0.972747 - . ID=CGI_10022616; scaffold351 TRF Tandem_Repeat 628153 628190 76 + . . scaffold351 TRF Tandem_Repeat 630393 630446 108 + . . scaffold351 GLEAN promoter 633599 634598 1 + . ID=CGI_10022617; scaffold351 GLEAN mRNA 634599 635820 1 + . ID=CGI_10022617; scaffold351 TRF Tandem_Repeat 634884 634966 139 + . . scaffold351 TRF Tandem_Repeat 636200 636252 97 + . . scaffold351 GLEAN mRNA 642423 648599 1 - . ID=CGI_10022618; scaffold351 TRF Tandem_Repeat 644813 644862 100 + . . scaffold351 GLEAN promoter 648600 649599 1 - . ID=CGI_10022618; scaffold351 GLEAN promoter 654271 655270 0.999999 + . ID=CGI_10022619; scaffold351 GLEAN mRNA 655271 661642 0.999999 + . ID=CGI_10022619; scaffold351 GLEAN promoter 660937 661936 1 + . ID=CGI_10022620; scaffold351 GLEAN mRNA 661937 669015 1 + . ID=CGI_10022620; scaffold351 TRF Tandem_Repeat 665592 665641 59 + . . scaffold351 GLEAN promoter 668210 669209 0.456156 + . ID=CGI_10022621; scaffold351 GLEAN mRNA 669210 748966 0.456156 + . ID=CGI_10022621; scaffold351 TRF Tandem_Repeat 674234 674266 57 + . . scaffold351 TRF Tandem_Repeat 681616 681764 174 + . . scaffold351 TRF Tandem_Repeat 682783 682931 165 + . . scaffold351 TRF Tandem_Repeat 682786 682868 51 + . . scaffold351 TRF Tandem_Repeat 682822 682905 55 + . . scaffold351 TRF Tandem_Repeat 683948 684096 165 + . . scaffold351 TRF Tandem_Repeat 683951 684033 51 + . . scaffold351 TRF Tandem_Repeat 683987 684070 55 + . . scaffold351 TRF Tandem_Repeat 685147 685291 168 + . . scaffold351 TRF Tandem_Repeat 685147 685321 147 + . . scaffold351 TRF Tandem_Repeat 690758 690899 149 + . . scaffold351 TRF Tandem_Repeat 690767 694218 4354 + . . scaffold351 TRF Tandem_Repeat 690797 693741 5683 + . . scaffold351 TRF Tandem_Repeat 690908 691145 217 + . . scaffold351 TRF Tandem_Repeat 691154 691391 217 + . . scaffold351 TRF Tandem_Repeat 691400 691637 217 + . . scaffold351 TRF Tandem_Repeat 691646 691883 217 + . . scaffold351 TRF Tandem_Repeat 691892 692129 217 + . . scaffold351 TRF Tandem_Repeat 692138 692375 217 + . . scaffold351 TRF Tandem_Repeat 692384 692621 217 + . . scaffold351 TRF Tandem_Repeat 692630 692867 217 + . . scaffold351 TRF Tandem_Repeat 692876 693113 217 + . . scaffold351 TRF Tandem_Repeat 693122 693359 208 + . . scaffold351 TRF Tandem_Repeat 693183 694212 652 + . . scaffold351 TRF Tandem_Repeat 693368 693605 226 + . . scaffold351 TRF Tandem_Repeat 693443 693531 66 + . . scaffold351 TRF Tandem_Repeat 693655 693744 50 + . . scaffold351 TRF Tandem_Repeat 693830 694064 211 + . . scaffold351 TRF Tandem_Repeat 694073 694219 168 + . . scaffold351 TRF Tandem_Repeat 694999 695145 168 + . . scaffold351 TRF Tandem_Repeat 698155 698365 242 + . . scaffold351 TRF Tandem_Repeat 698155 699143 1093 + . . scaffold351 TRF Tandem_Repeat 698369 700598 1905 + . . scaffold351 TRF Tandem_Repeat 698374 698537 175 + . . scaffold351 TRF Tandem_Repeat 698401 698960 289 + . . scaffold351 TRF Tandem_Repeat 698440 699143 519 + . . scaffold351 TRF Tandem_Repeat 698709 698802 56 + . . scaffold351 TRF Tandem_Repeat 698815 698978 166 + . . scaffold351 TRF Tandem_Repeat 699016 699320 178 + . . scaffold351 TRF Tandem_Repeat 699190 699353 159 + . . scaffold351 TRF Tandem_Repeat 699281 699743 374 + . . scaffold351 TRF Tandem_Repeat 699631 699794 166 + . . scaffold351 TRF Tandem_Repeat 699658 700217 282 + . . scaffold351 TRF Tandem_Repeat 700069 700235 181 + . . scaffold351 TRF Tandem_Repeat 700273 700522 182 + . . scaffold351 TRF Tandem_Repeat 710404 710630 179 + . . scaffold351 TRF Tandem_Repeat 710656 710797 140 + . . scaffold351 TRF Tandem_Repeat 715812 715996 129 + . . scaffold351 TRF Tandem_Repeat 716019 716157 129 + . . scaffold351 TRF Tandem_Repeat 716169 716428 195 + . . scaffold351 TRF Tandem_Repeat 716202 716490 287 + . . scaffold351 TRF Tandem_Repeat 717534 717572 69 + . . scaffold351 TRF Tandem_Repeat 718374 718413 71 + . . scaffold351 TRF Tandem_Repeat 724765 725537 1000 + . . scaffold351 TRF Tandem_Repeat 724779 725351 270 + . . scaffold351 TRF Tandem_Repeat 724810 725537 334 + . . scaffold351 TRF Tandem_Repeat 724876 725513 260 + . . scaffold351 TRF Tandem_Repeat 734645 734786 149 + . . scaffold351 TRF Tandem_Repeat 734909 735047 152 + . . scaffold351 TRF Tandem_Repeat 735056 735197 142 + . . scaffold351 TRF Tandem_Repeat 737836 737876 73 + . . scaffold351 TRF Tandem_Repeat 743867 743941 150 + . . scaffold351 TRF Tandem_Repeat 743993 744036 88 + . . scaffold351 WUBlastX LINE_L2 750211 750573 238 - . . scaffold351 WUBlastX LINE_L2 750569 750799 89 - . . scaffold351 WUBlastX LINE_L2 751624 751713 22 - . . scaffold351 GLEAN promoter 757528 758527 0.999672 + . ID=CGI_10022622; scaffold351 GLEAN mRNA 758528 761318 0.999672 + . ID=CGI_10022622; scaffold351 TRF Tandem_Repeat 758842 758897 112 + . . scaffold351 TRF Tandem_Repeat 768062 768101 80 + . . scaffold351 TRF Tandem_Repeat 772303 772395 71 + . . scaffold35102 GLEAN mRNA 5501 18145 0.55322 - . ID=CGI_10001416; scaffold35102 GLEAN promoter 18146 19145 0.55322 - . ID=CGI_10001416; scaffold35104 TRF Tandem_Repeat 1918 2002 89 + . . scaffold35104 TRF Tandem_Repeat 1923 2000 120 + . . scaffold35104 TRF Tandem_Repeat 9773 9822 100 + . . scaffold35104 WUBlastX LTR_Pao 15683 16405 71 + . . scaffold35104 WUBlastX LTR_Pao 15950 16441 113 + . . scaffold35104 WUBlastX LTR_Pao 16094 16483 152 + . . scaffold35104 TRF Tandem_Repeat 18400 18457 116 + . . scaffold35104 TRF Tandem_Repeat 18457 18510 108 + . . scaffold35104 TRF Tandem_Repeat 19364 19406 86 + . . scaffold35108 GLEAN promoter 359 1358 0.999998 + . ID=CGI_10001418; scaffold35108 GLEAN mRNA 1359 20465 0.999998 + . ID=CGI_10001418; scaffold35110 TRF Tandem_Repeat 954 1035 148 + . . scaffold35110 TRF Tandem_Repeat 1871 3598 1743 + . . scaffold35110 TRF Tandem_Repeat 1871 3598 1739 + . . scaffold35110 WUBlastX LINE_L2 5852 6391 117 + . . scaffold35110 WUBlastX LINE_L1 5948 6676 105 + . . scaffold35110 WUBlastX LINE_L1 5957 6424 246 + . . scaffold35110 WUBlastX LINE_RTE-X 6650 6880 86 + . . scaffold35110 WUBlastX LINE_RTE-X 6888 8534 804 + . . scaffold35110 WUBlastX LINE_RTE-X 8551 9051 148 + . . scaffold35110 TRF Tandem_Repeat 12862 12890 58 + . . scaffold35110 WUBlastX LINE_CR1 14797 14988 67 + . . scaffold35124 WUBlastX LINE_RTE-BovB 3898 4245 203 - . . scaffold35124 WUBlastX LINE_RTE-BovB 4239 4541 27 - . . scaffold35124 WUBlastX LINE_RTE-BovB 4251 4430 86 - . . scaffold35124 TRF Tandem_Repeat 13165 13403 193 + . . scaffold35124 GLEAN mRNA 13575 13991 0.986674 - . ID=CGI_10001421; scaffold35124 GLEAN promoter 13992 14991 0.986674 - . ID=CGI_10001421; scaffold35124 GLEAN mRNA 19446 22154 1 - . ID=CGI_10001422; scaffold35124 GLEAN promoter 22155 22731 1 - . ID=CGI_10001422; scaffold35136 GLEAN mRNA 12714 18442 1 - . ID=CGI_10001410; scaffold35136 GLEAN promoter 18443 19442 1 - . ID=CGI_10001410; scaffold35136 GLEAN mRNA 19283 21949 0.999999 - . ID=CGI_10001411; scaffold35136 GLEAN promoter 21950 22176 0.999999 - . ID=CGI_10001411; scaffold35138 TRF Tandem_Repeat 2366 2439 103 + . . scaffold35138 TRF Tandem_Repeat 5257 5362 74 + . . scaffold35138 WUBlastX LTR_Gypsy 5983 6123 21 - . . scaffold35138 WUBlastX LTR_Gypsy 5995 6087 22 - . . scaffold35138 WUBlastX LTR_Gypsy 6257 7852 1094 - . . scaffold35138 WUBlastX LTR_Gypsy 6257 8224 741 - . . scaffold35138 WUBlastX LTR_Gypsy 7850 9715 349 - . . scaffold35138 WUBlastX LTR_Gypsy 9059 9946 125 - . . scaffold35138 WUBlastX LTR_Gypsy 11261 11401 21 - . . scaffold35138 WUBlastX LTR_Gypsy 11273 11365 22 - . . scaffold35138 WUBlastX LTR_Gypsy 11535 14303 1894 - . . scaffold35138 WUBlastX LTR_Gypsy 14184 14330 23 - . . scaffold35138 WUBlastX LTR_Gypsy 15074 15490 34 - . . scaffold35138 WUBlastX LTR_Gypsy 15865 16557 135 - . . scaffold35138 WUBlastX LTR_Gypsy 15871 16413 170 - . . scaffold35138 TRF Tandem_Repeat 17272 17377 74 + . . scaffold35138 GLEAN promoter 20236 21235 0.999675 + . ID=CGI_10001519; scaffold35138 GLEAN mRNA 21236 24231 0.999675 + . ID=CGI_10001519; scaffold35138 WUBlastX DNA_Sola 23323 23490 65 + . . scaffold35152 TRF Tandem_Repeat 14861 14916 98 + . . scaffold35152 WUBlastX DNA_Sola 18010 18117 86 + . . scaffold35152 TRF Tandem_Repeat 18730 18754 50 + . . scaffold35154 WUBlastX LINE_CR1 5407 5736 55 + . . scaffold35154 WUBlastX LTR_Gypsy 5781 5993 93 - . . scaffold35154 WUBlastX DNA_Harbinger 6001 6405 192 + . . scaffold35154 WUBlastX DNA_Harbinger 6399 6875 163 + . . scaffold35154 GLEAN promoter 17569 18568 0.999998 + . ID=CGI_10001427; scaffold35154 GLEAN mRNA 18569 19469 0.999998 + . ID=CGI_10001427; scaffold35154 TRF Tandem_Repeat 20921 20962 68 + . . scaffold35154 TRF Tandem_Repeat 20922 20959 51 + . . scaffold35162 TRF Tandem_Repeat 1 87 165 + . . scaffold35162 WUBlastX DNA_Crypton 16025 16456 79 - . . scaffold35162 GLEAN mRNA 16160 20596 0.996194 - . ID=CGI_10001426; scaffold35162 TRF Tandem_Repeat 16670 16719 75 + . . scaffold35162 WUBlastX DNA_Crypton 19709 20329 62 - . . scaffold35162 GLEAN promoter 20597 21596 0.996194 - . ID=CGI_10001426; scaffold35162 TRF Tandem_Repeat 21005 21087 127 + . . scaffold35162 TRF Tandem_Repeat 21007 21067 68 + . . scaffold35180 GLEAN mRNA 904 21932 0.992496 - . ID=CGI_10001433; scaffold35180 WUBlastX LINE_RTE-X 9682 10221 81 + . . scaffold35180 WUBlastX LINE_RTE-X 9682 10011 98 + . . scaffold35180 WUBlastX LINE_RTE-X 10423 10476 21 + . . scaffold35180 TRF Tandem_Repeat 11299 11345 94 + . . scaffold35180 WUBlastX LINE_L1-Tx1 17169 18098 150 - . . scaffold35180 WUBlastX LINE_L1-Tx1 18136 18543 146 - . . scaffold35180 WUBlastX LINE_L1-Tx1 18335 19555 334 - . . scaffold35180 WUBlastX LINE_L1-Tx1 18542 19594 593 - . . scaffold35180 WUBlastX LINE_L1-Tx1 19558 20895 519 - . . scaffold35180 GLEAN promoter 21933 22932 0.992496 - . ID=CGI_10001433; scaffold35194 WUBlastX DNA_Maverick 6804 7274 25 + . . scaffold35194 WUBlastX DNA_Maverick 6906 7475 219 + . . scaffold35194 TRF Tandem_Repeat 9930 11298 2100 + . . scaffold35194 TRF Tandem_Repeat 9930 11298 2183 + . . scaffold35194 WUBlastX DNA_Maverick 12596 12781 41 - . . scaffold35194 WUBlastX DNA_Maverick 12713 13312 54 - . . scaffold35194 WUBlastX DNA_Maverick 12989 13378 131 - . . scaffold35194 WUBlastX DNA_Maverick 13362 13517 33 - . . scaffold35194 WUBlastX DNA_Maverick 13455 13541 21 - . . scaffold35194 WUBlastX DNA_Maverick 13692 13991 59 - . . scaffold35194 WUBlastX DNA_Maverick 14749 15171 326 + . . scaffold35198 WUBlastX DNA_TcMar-Marin 17424 17735 63 - . . scaffold35198 WUBlastX DNA_TcMar-Marin 20032 20475 120 - . . scaffold35198 WUBlastX DNA_TcMar-Marin 20044 20574 111 - . . scaffold35198 WUBlastX DNA_TcMar-Marin 20492 20668 56 - . . scaffold352 GLEAN promoter 1 400 0.999068 + . ID=CGI_10012240; scaffold352 GLEAN mRNA 401 1405 0.999068 + . ID=CGI_10012240; scaffold352 GLEAN mRNA 5924 8249 1 - . ID=CGI_10012241; scaffold352 GLEAN promoter 8250 9249 1 - . ID=CGI_10012241; scaffold352 GLEAN mRNA 9441 13919 0.738574 - . ID=CGI_10012242; scaffold352 WUBlastX DNA_Harbinger 10247 10426 49 - . . scaffold352 GLEAN promoter 13920 14919 0.738574 - . ID=CGI_10012242; scaffold352 TRF Tandem_Repeat 22919 22968 55 + . . scaffold352 GLEAN promoter 28092 29091 0.850741 + . ID=CGI_10012243; scaffold352 GLEAN mRNA 29092 48341 0.850741 + . ID=CGI_10012243; scaffold352 TRF Tandem_Repeat 52172 52917 1227 + . . scaffold352 GLEAN promoter 54040 55039 0.972718 + . ID=CGI_10012244; scaffold352 GLEAN mRNA 55040 89183 0.972718 + . ID=CGI_10012244; scaffold352 WUBlastX DNA_TcMar-Marin 73649 73732 34 - . . scaffold352 WUBlastX DNA_TcMar-Marin 73726 74361 123 - . . scaffold352 WUBlastX DNA_TcMar-Marin 73732 74475 36 - . . scaffold352 TRF Tandem_Repeat 77583 78339 411 + . . scaffold352 TRF Tandem_Repeat 77583 78339 496 + . . scaffold352 GLEAN mRNA 89419 90207 1 - . ID=CGI_10012245; scaffold352 GLEAN promoter 90208 91207 1 - . ID=CGI_10012245; scaffold352 GLEAN promoter 92840 93839 0.829619 + . ID=CGI_10012246; scaffold352 GLEAN mRNA 93840 103823 0.829619 + . ID=CGI_10012246; scaffold352 TRF Tandem_Repeat 98211 98273 108 + . . scaffold352 TRF Tandem_Repeat 106128 107799 1507 + . . scaffold352 TRF Tandem_Repeat 106132 107799 1515 + . . scaffold352 TRF Tandem_Repeat 110225 110449 274 + . . scaffold352 TRF Tandem_Repeat 110417 110570 137 + . . scaffold352 WUBlastX LINE_Penelope 116361 116762 30 - . . scaffold352 TRF Tandem_Repeat 117530 117622 98 + . . scaffold352 TRF Tandem_Repeat 117697 117886 148 + . . scaffold352 TRF Tandem_Repeat 117706 117886 245 + . . scaffold352 TRF Tandem_Repeat 118986 119015 51 + . . scaffold352 TRF Tandem_Repeat 122036 122223 83 + . . scaffold352 GLEAN promoter 122652 123651 0.989157 + . ID=CGI_10012247; scaffold352 GLEAN mRNA 123652 125728 0.989157 + . ID=CGI_10012247; scaffold352 TRF Tandem_Repeat 133947 134109 283 + . . scaffold352 TRF Tandem_Repeat 135767 135984 220 + . . scaffold352 TRF Tandem_Repeat 135788 135988 330 + . . scaffold352 TRF Tandem_Repeat 139028 139089 124 + . . scaffold352 WUBlastX LTR_Gypsy 149285 149353 23 - . . scaffold352 GLEAN mRNA 149372 180585 0.508288 - . ID=CGI_10012248; scaffold352 WUBlastX LTR_Copia 149833 149985 21 - . . scaffold352 WUBlastX LTR_Gypsy-Cigr 149860 151227 781 - . . scaffold352 WUBlastX LTR_Gypsy 150930 152837 867 - . . scaffold352 WUBlastX LTR_Gypsy-Cigr 151332 153071 1327 - . . scaffold352 WUBlastX LTR_Gypsy-Cigr 151374 153461 1279 - . . scaffold352 WUBlastX LTR_Gypsy 153195 153515 71 - . . scaffold352 WUBlastX LTR_Gypsy 153518 153796 27 - . . scaffold352 WUBlastX LTR_Gypsy 153599 154411 69 - . . scaffold352 WUBlastX LTR_Pao 153611 154693 22 - . . scaffold352 WUBlastX LTR_Gypsy 153662 154309 136 - . . scaffold352 WUBlastX LTR_Gypsy-Cigr 153836 154333 189 - . . scaffold352 WUBlastX LINE_CR1-L2 156766 156888 23 - . . scaffold352 WUBlastX LINE_CR1-L2 156778 156879 34 - . . scaffold352 WUBlastX LINE_CR1-L2 157738 157890 42 - . . scaffold352 WUBlastX LINE_CR1-L2 157774 157926 61 - . . scaffold352 TRF Tandem_Repeat 167542 167583 84 + . . scaffold352 TRF Tandem_Repeat 172503 172658 81 + . . scaffold352 TRF Tandem_Repeat 172503 172701 240 + . . scaffold352 TRF Tandem_Repeat 172503 172732 234 + . . scaffold352 TRF Tandem_Repeat 173445 173494 100 + . . scaffold352 TRF Tandem_Repeat 174417 174496 144 + . . scaffold352 TRF Tandem_Repeat 174528 174554 54 + . . scaffold352 TRF Tandem_Repeat 176939 176977 62 + . . scaffold352 WUBlastX LINE_Penelope 177272 177526 55 - . . scaffold352 GLEAN promoter 180586 181585 0.508288 - . ID=CGI_10012248; scaffold352 TRF Tandem_Repeat 182033 182076 88 + . . scaffold352 GLEAN mRNA 189070 189456 0.999602 - . ID=CGI_10012249; scaffold352 GLEAN promoter 189457 190456 0.999602 - . ID=CGI_10012249; scaffold352 WUBlastX LTR_Copia 189729 189962 56 - . . scaffold352 GLEAN mRNA 211874 219180 0.998998 - . ID=CGI_10012250; scaffold352 TRF Tandem_Repeat 218520 218699 125 + . . scaffold352 TRF Tandem_Repeat 218540 218654 90 + . . scaffold352 GLEAN promoter 219181 220180 0.998998 - . ID=CGI_10012250; scaffold352 TRF Tandem_Repeat 223843 223977 98 + . . scaffold352 WUBlastX DNA_Kolobok 235084 235296 44 - . . scaffold352 WUBlastX DNA_Kolobok 235405 235467 24 - . . scaffold352 WUBlastX LINE_RTE-X 240548 240664 33 + . . scaffold352 WUBlastX LINE_RTE-X 240900 241400 27 + . . scaffold352 WUBlastX LINE_RTE-X 241203 241400 57 + . . scaffold352 WUBlastX LINE_RTE-X 241245 241397 71 + . . scaffold352 WUBlastX LINE_RTE-X 241248 241463 32 + . . scaffold352 WUBlastX DNA_TcMar-Tc1 252168 253148 272 - . . scaffold352 TRF Tandem_Repeat 253884 253936 106 + . . scaffold352 TRF Tandem_Repeat 255599 255647 98 + . . scaffold352 TRF Tandem_Repeat 266925 266977 61 + . . scaffold352 GLEAN promoter 308286 309285 1 + . ID=CGI_10012251; scaffold352 TRF Tandem_Repeat 308630 308688 118 + . . scaffold352 GLEAN mRNA 309286 319403 1 + . ID=CGI_10012251; scaffold352 WUBlastX DNA_PiggyBac 310119 310352 35 + . . scaffold352 WUBlastX DNA_PiggyBac 311542 311691 43 + . . scaffold352 WUBlastX DNA_PiggyBac 311545 311724 32 + . . scaffold352 WUBlastX DNA_PiggyBac 312283 312783 306 + . . scaffold352 WUBlastX DNA_PiggyBac 312286 312924 154 + . . scaffold352 WUBlastX DNA_PiggyBac 312940 313056 40 + . . scaffold352 TRF Tandem_Repeat 313719 313743 50 + . . scaffold352 TRF Tandem_Repeat 316148 316194 85 + . . scaffold352 TRF Tandem_Repeat 318846 318890 90 + . . scaffold35200 GLEAN mRNA 8945 9175 1 - . ID=CGI_10001435; scaffold35200 GLEAN promoter 9176 10175 1 - . ID=CGI_10001435; scaffold35230 GLEAN mRNA 4430 5488 1 - . ID=CGI_10001436; scaffold35230 GLEAN promoter 5489 6488 1 - . ID=CGI_10001436; scaffold35230 GLEAN promoter 5951 6950 0.695547 + . ID=CGI_10001437; scaffold35230 GLEAN mRNA 6951 14687 0.695547 + . ID=CGI_10001437; scaffold35230 TRF Tandem_Repeat 7243 7376 85 + . . scaffold35230 TRF Tandem_Repeat 7633 7725 84 + . . scaffold35230 TRF Tandem_Repeat 11648 11903 431 + . . scaffold35230 TRF Tandem_Repeat 16226 16710 756 + . . scaffold35230 TRF Tandem_Repeat 17416 17636 331 + . . scaffold35230 GLEAN mRNA 19314 19835 1 - . ID=CGI_10001438; scaffold35230 GLEAN promoter 19836 20835 1 - . ID=CGI_10001438; scaffold35230 WUBlastX LTR_Ngaro 20467 20688 65 - . . scaffold35230 WUBlastX LTR_Ngaro 20609 21712 144 - . . scaffold35230 GLEAN mRNA 22466 23089 0.481188 - . ID=CGI_10001439; scaffold35230 GLEAN promoter 23090 23326 0.481188 - . ID=CGI_10001439; scaffold35236 GLEAN mRNA 6858 8832 1 - . ID=CGI_10001440; scaffold35236 GLEAN promoter 8833 9832 1 - . ID=CGI_10001440; scaffold35236 GLEAN promoter 11201 12200 1 + . ID=CGI_10001441; scaffold35236 GLEAN mRNA 12201 17885 1 + . ID=CGI_10001441; scaffold35238 WUBlastX LINE_L1-Tx1 670 981 47 - . . scaffold35238 WUBlastX LINE_L1-Tx1 733 969 68 - . . scaffold35238 WUBlastX LINE_L1 775 993 80 - . . scaffold35238 WUBlastX LINE_L1-Tx1 886 1215 50 - . . scaffold35238 WUBlastX LINE_L1-Tx1 1048 1218 66 - . . scaffold35238 WUBlastX LINE_L1 1361 1666 32 - . . scaffold35238 WUBlastX LINE_L1-Tx1 1702 1776 21 - . . scaffold35238 WUBlastX LINE_L1-Tx1 1841 2050 28 - . . scaffold35238 WUBlastX LINE_L1-Tx1 1877 2134 24 - . . scaffold35238 WUBlastX LINE_L1-Tx1 1895 2071 28 - . . scaffold35238 WUBlastX LINE_L1 1898 2023 38 - . . scaffold35238 WUBlastX LINE_L1-Tx1 1901 2047 30 - . . scaffold35238 WUBlastX LINE_L1 2311 2385 29 - . . scaffold35238 WUBlastX LINE_CR1 2662 2991 25 - . . scaffold35238 WUBlastX LINE_L1 3027 3065 21 - . . scaffold35238 WUBlastX LINE_L1-Tx1 3065 3196 42 - . . scaffold35238 GLEAN mRNA 7873 21133 0.927716 - . ID=CGI_10001448; scaffold35238 GLEAN promoter 21134 22133 0.927716 - . ID=CGI_10001448; scaffold35238 TRF Tandem_Repeat 22978 23024 94 + . . scaffold35240 GLEAN promoter 3482 4481 0.999308 + . ID=CGI_10001453; scaffold35240 GLEAN mRNA 4482 17915 0.999308 + . ID=CGI_10001453; scaffold35250 GLEAN mRNA 3361 9106 0.79982 - . ID=CGI_10001442; scaffold35250 GLEAN promoter 9107 10106 0.79982 - . ID=CGI_10001442; scaffold35252 WUBlastX LINE_RTE-X 9647 9916 59 - . . scaffold35252 WUBlastX LINE_RTE-X 9665 9964 27 - . . scaffold35252 TRF Tandem_Repeat 13312 13351 64 + . . scaffold35252 TRF Tandem_Repeat 22800 22863 128 + . . scaffold35252 TRF Tandem_Repeat 22863 22909 94 + . . scaffold35266 GLEAN promoter 4619 5618 1 + . ID=CGI_10001434; scaffold35266 GLEAN mRNA 5619 15884 1 + . ID=CGI_10001434; scaffold35266 WUBlastX LTR_Copia 9418 9720 105 + . . scaffold35266 WUBlastX LTR_Copia 11224 11424 88 - . . scaffold35266 WUBlastX LTR_Copia 11224 12036 71 - . . scaffold35266 WUBlastX LTR_Copia 11769 12287 25 - . . scaffold35266 TRF Tandem_Repeat 14577 14641 130 + . . scaffold35268 TRF Tandem_Repeat 6976 7040 69 + . . scaffold35268 TRF Tandem_Repeat 10800 10967 194 + . . scaffold35268 TRF Tandem_Repeat 10808 10930 68 + . . scaffold35268 WUBlastX DNA_TcMar-Marin 15584 15865 132 - . . scaffold35268 WUBlastX DNA_TcMar-Marin 16063 16410 96 - . . scaffold35270 GLEAN mRNA 2215 21851 0.907947 - . ID=CGI_10001455; scaffold35270 GLEAN promoter 21852 22851 0.907947 - . ID=CGI_10001455; scaffold35272 GLEAN promoter 2165 3164 0.999572 + . ID=CGI_10001464; scaffold35272 GLEAN mRNA 3165 4829 0.999572 + . ID=CGI_10001464; scaffold35272 WUBlastX LTR_Gypsy 3423 3929 22 + . . scaffold35272 WUBlastX LINE_RTE-X 7000 7347 35 - . . scaffold35272 WUBlastX LINE_RTE-X 7319 7606 98 - . . scaffold35272 WUBlastX LINE_RTE-X 7605 7850 41 - . . scaffold35272 WUBlastX LINE_RTE-X 7608 7775 79 - . . scaffold35272 WUBlastX LINE_RTE-X 7641 7775 81 - . . scaffold35272 WUBlastX LINE_RTE-X 7656 7805 56 - . . scaffold35272 GLEAN promoter 11769 12768 0.836235 + . ID=CGI_10001465; scaffold35272 GLEAN mRNA 12769 14169 0.836235 + . ID=CGI_10001465; scaffold35272 GLEAN mRNA 17170 20881 0.781845 - . ID=CGI_10001466; scaffold35272 GLEAN promoter 20882 21881 0.781845 - . ID=CGI_10001466; scaffold35272 TRF Tandem_Repeat 22611 22661 102 + . . scaffold35276 GLEAN promoter 8063 9062 0.82884 + . ID=CGI_10001454; scaffold35276 GLEAN mRNA 9063 12935 0.82884 + . ID=CGI_10001454; scaffold35276 WUBlastX LINE_L1-Tx1 14080 16260 939 + . . scaffold35276 WUBlastX LINE_L1-Tx1 16521 16967 33 + . . scaffold35276 TRF Tandem_Repeat 23499 23598 119 + . . scaffold35286 GLEAN promoter 1 496 1 + . ID=CGI_10001449; scaffold35286 GLEAN mRNA 497 2014 1 + . ID=CGI_10001449; scaffold35286 TRF Tandem_Repeat 1429 1505 50 + . . scaffold35286 GLEAN mRNA 4045 4491 0.996199 - . ID=CGI_10001450; scaffold35286 GLEAN promoter 4492 5491 0.996199 - . ID=CGI_10001450; scaffold35286 GLEAN promoter 4633 5632 1 + . ID=CGI_10001451; scaffold35286 WUBlastX LINE_R1 5546 5614 24 + . . scaffold35286 GLEAN mRNA 5633 23296 1 + . ID=CGI_10001451; scaffold35286 WUBlastX LINE_Proto2 6299 7750 158 + . . scaffold35286 WUBlastX LINE_L2 7502 7795 96 + . . scaffold35286 TRF Tandem_Repeat 15930 16073 288 + . . scaffold35286 TRF Tandem_Repeat 16392 16449 75 + . . scaffold35286 GLEAN mRNA 18605 18913 0.531613 - . ID=CGI_10001452; scaffold35286 GLEAN promoter 18914 19913 0.531613 - . ID=CGI_10001452; scaffold35296 GLEAN mRNA 2163 12763 0.990769 - . ID=CGI_10001462; scaffold35296 GLEAN promoter 12764 13763 0.990769 - . ID=CGI_10001462; scaffold35296 GLEAN promoter 20083 21082 1 + . ID=CGI_10001463; scaffold35296 GLEAN mRNA 21083 23587 1 + . ID=CGI_10001463; scaffold353 WUBlastX LTR_Gypsy 26 463 109 + . . scaffold353 WUBlastX LTR_Gypsy 426 716 155 + . . scaffold353 WUBlastX LTR_Gypsy 426 773 132 + . . scaffold353 WUBlastX LTR_Gypsy 444 857 77 + . . scaffold353 TRF Tandem_Repeat 1963 2045 66 + . . scaffold353 TRF Tandem_Repeat 7570 7618 53 + . . scaffold353 TRF Tandem_Repeat 8637 8696 120 + . . scaffold35306 GLEAN mRNA 6251 16288 0.999647 - . ID=CGI_10001468; scaffold35306 GLEAN promoter 16289 17288 0.999647 - . ID=CGI_10001468; scaffold35310 GLEAN mRNA 20260 22464 1 - . ID=CGI_10001467; scaffold35310 GLEAN promoter 22465 23464 1 - . ID=CGI_10001467; scaffold35330 GLEAN promoter 11766 12765 0.991913 + . ID=CGI_10001491; scaffold35330 GLEAN mRNA 12766 16202 0.991913 + . ID=CGI_10001491; scaffold35332 GLEAN mRNA 3775 4032 0.999372 - . ID=CGI_10001469; scaffold35332 WUBlastX LINE_CR1 3781 4047 85 - . . scaffold35332 GLEAN promoter 4033 5032 0.999372 - . ID=CGI_10001469; scaffold35332 TRF Tandem_Repeat 10123 10580 688 + . . scaffold35332 GLEAN promoter 11114 12113 1 + . ID=CGI_10001470; scaffold35332 TRF Tandem_Repeat 11584 12136 874 + . . scaffold35332 GLEAN mRNA 12114 15163 1 + . ID=CGI_10001470; scaffold35332 GLEAN mRNA 16384 23840 1 - . ID=CGI_10001471; scaffold35332 GLEAN promoter 23841 23902 1 - . ID=CGI_10001471; scaffold35334 GLEAN mRNA 432 809 1 - . ID=CGI_10001472; scaffold35334 GLEAN promoter 810 1809 1 - . ID=CGI_10001472; scaffold35334 GLEAN promoter 14846 15845 0.980198 + . ID=CGI_10001473; scaffold35334 GLEAN mRNA 15846 20808 0.980198 + . ID=CGI_10001473; scaffold35336 GLEAN mRNA 20 10310 0.999999 - . ID=CGI_10001479; scaffold35336 TRF Tandem_Repeat 2592 3376 974 + . . scaffold35336 TRF Tandem_Repeat 4417 4448 64 + . . scaffold35336 GLEAN promoter 5372 6371 0.999785 + . ID=CGI_10001480; scaffold35336 WUBlastX DNA_En-Spm 5616 7898 1261 + . . scaffold35336 GLEAN mRNA 6372 7910 0.999785 + . ID=CGI_10001480; scaffold35336 WUBlastX DNA_IS4EU 8734 9048 152 - . . scaffold35336 WUBlastX DNA_IS4EU 8734 9189 119 - . . scaffold35336 GLEAN promoter 10311 11310 0.999999 - . ID=CGI_10001479; scaffold35336 WUBlastX DNA_TcMar-Tc1 10746 10817 42 - . . scaffold35336 WUBlastX DNA_TcMar-Tc1 10790 11020 51 - . . scaffold35336 WUBlastX DNA_TcMar-Tc1 10966 11064 25 - . . scaffold35336 WUBlastX LINE_L1-Tx1 12028 12276 20 + . . scaffold35336 WUBlastX LINE_L1 12773 12820 21 + . . scaffold35336 WUBlastX LINE_L1-Tx1 12782 12847 21 + . . scaffold35336 WUBlastX LINE_L1 13211 13549 117 + . . scaffold35336 WUBlastX LINE_L1 13262 13636 153 + . . scaffold35336 WUBlastX LINE_L1-Tx1 13286 14593 142 + . . scaffold35336 WUBlastX LTR_Gypsy-Troyk 19616 20083 526 + . . scaffold35344 TRF Tandem_Repeat 2311 2470 160 + . . scaffold35344 TRF Tandem_Repeat 9266 9626 451 + . . scaffold35344 TRF Tandem_Repeat 9269 9626 476 + . . scaffold35344 TRF Tandem_Repeat 9643 9844 268 + . . scaffold35344 WUBlastX RC_Helitron 12129 12518 39 - . . scaffold35344 WUBlastX DNA_Helitron 12195 12410 66 - . . scaffold35344 WUBlastX RC_Helitron 12624 12884 74 - . . scaffold35344 WUBlastX RC_Helitron 12877 12951 24 - . . scaffold35344 WUBlastX RC_Helitron 12959 13315 167 - . . scaffold35344 WUBlastX RC_Helitron 13471 13785 31 - . . scaffold35344 WUBlastX RC_Helitron 13552 13773 86 - . . scaffold35344 WUBlastX RC_Helitron 13603 13773 88 - . . scaffold35344 WUBlastX RC_Helitron 13636 13785 116 - . . scaffold35344 WUBlastX RC_Helitron 13775 14599 347 - . . scaffold35344 TRF Tandem_Repeat 13938 13977 80 + . . scaffold35344 WUBlastX RC_Helitron 14311 14949 307 - . . scaffold35344 WUBlastX RC_Helitron 14964 15560 320 - . . scaffold35344 WUBlastX RC_Helitron 15541 15729 81 - . . scaffold35344 WUBlastX RC_Helitron 15993 16541 65 - . . scaffold35344 TRF Tandem_Repeat 16904 17186 397 + . . scaffold35344 TRF Tandem_Repeat 17019 17151 63 + . . scaffold35344 TRF Tandem_Repeat 17633 17966 501 + . . scaffold35344 TRF Tandem_Repeat 17748 17931 77 + . . scaffold35346 GLEAN mRNA 1512 13526 0.901079 - . ID=CGI_10001477; scaffold35346 WUBlastX LTR_Gypsy 7568 8125 345 + . . scaffold35346 WUBlastX LTR_Gypsy 8115 8270 111 + . . scaffold35346 GLEAN promoter 13527 14526 0.901079 - . ID=CGI_10001477; scaffold35346 WUBlastX DNA_Maverick 18377 18835 76 + . . scaffold35346 WUBlastX DNA_Maverick 18455 19435 177 + . . scaffold35346 WUBlastX DNA_Maverick 19683 19778 43 + . . scaffold35346 WUBlastX DNA_Maverick 19792 20559 268 + . . scaffold35346 WUBlastX DNA_Maverick 20486 20725 22 + . . scaffold35346 WUBlastX DNA_Maverick 20643 20837 74 + . . scaffold35346 WUBlastX DNA_Maverick 20830 21177 126 + . . scaffold35346 TRF Tandem_Repeat 23347 23536 188 + . . scaffold35348 GLEAN promoter 7276 8275 0.999351 + . ID=CGI_10001481; scaffold35348 GLEAN mRNA 8276 20168 0.999351 + . ID=CGI_10001481; scaffold35358 WUBlastX LTR_Pao 3159 3461 113 + . . scaffold35358 WUBlastX LTR_Pao 3222 3530 174 + . . scaffold35358 WUBlastX LTR_Pao 3264 3506 248 + . . scaffold35358 WUBlastX LTR_Pao 3282 3608 105 + . . scaffold35358 GLEAN promoter 6375 7374 0.999372 + . ID=CGI_10001484; scaffold35358 GLEAN mRNA 7375 7602 0.999372 + . ID=CGI_10001484; scaffold35358 WUBlastX LINE_RTE-X 8727 9335 87 + . . scaffold35358 WUBlastX LINE_RTE-X 9352 9942 91 + . . scaffold35358 GLEAN mRNA 12464 22132 0.9966 - . ID=CGI_10001485; scaffold35358 GLEAN promoter 22133 23132 0.9966 - . ID=CGI_10001485; scaffold35358 WUBlastX RC_Helitron 23617 24174 41 + . . scaffold35380 TRF Tandem_Repeat 574 636 126 + . . scaffold35380 WUBlastX LINE_RTE-X 3823 4719 355 + . . scaffold35380 TRF Tandem_Repeat 7377 7530 229 + . . scaffold35380 TRF Tandem_Repeat 11915 11957 86 + . . scaffold35380 TRF Tandem_Repeat 14031 14379 565 + . . scaffold35388 GLEAN promoter 4606 5605 0.347575 + . ID=CGI_10001486; scaffold35388 GLEAN mRNA 5606 18621 0.347575 + . ID=CGI_10001486; scaffold35388 GLEAN mRNA 22196 22372 0.618241 - . ID=CGI_10001487; scaffold35388 GLEAN promoter 22373 23372 0.618241 - . ID=CGI_10001487; scaffold35392 GLEAN mRNA 104 5122 0.814164 - . ID=CGI_10001488; scaffold35392 GLEAN promoter 5123 6122 0.814164 - . ID=CGI_10001488; scaffold35392 GLEAN mRNA 13026 14403 0.836238 - . ID=CGI_10001489; scaffold35392 GLEAN promoter 14404 15403 0.836238 - . ID=CGI_10001489; scaffold35392 GLEAN promoter 18082 19081 0.999999 + . ID=CGI_10001490; scaffold35392 GLEAN mRNA 19082 22732 0.999999 + . ID=CGI_10001490; scaffold35396 GLEAN promoter 3606 4605 1 + . ID=CGI_10001503; scaffold35396 GLEAN mRNA 4606 6339 1 + . ID=CGI_10001503; scaffold35396 GLEAN mRNA 15829 22784 0.999349 - . ID=CGI_10001504; scaffold35396 GLEAN promoter 22785 23784 0.999349 - . ID=CGI_10001504; scaffold354 TRF Tandem_Repeat 654 819 210 + . . scaffold354 TRF Tandem_Repeat 1067 1152 172 + . . scaffold354 WUBlastX LTR_Ngaro 7235 7552 111 + . . scaffold354 WUBlastX LTR_Ngaro 7434 7706 41 + . . scaffold354 WUBlastX LTR_Ngaro 7601 8131 140 + . . scaffold354 WUBlastX LTR_Ngaro 7703 8494 40 + . . scaffold354 WUBlastX LTR_Ngaro 8496 8546 22 + . . scaffold354 WUBlastX LTR_Ngaro 8496 8537 34 + . . scaffold354 TRF Tandem_Repeat 8615 8640 52 + . . scaffold354 TRF Tandem_Repeat 15819 15965 117 + . . scaffold354 TRF Tandem_Repeat 18001 18110 58 + . . scaffold354 TRF Tandem_Repeat 19773 19907 73 + . . scaffold354 TRF Tandem_Repeat 19834 19921 92 + . . scaffold354 TRF Tandem_Repeat 33718 33765 78 + . . scaffold354 WUBlastX LTR_Gypsy 36771 36836 25 - . . scaffold354 WUBlastX LTR_Gypsy 36852 36935 23 - . . scaffold354 WUBlastX LTR_Gypsy 36938 37912 336 - . . scaffold354 WUBlastX LTR_Gypsy 36998 37816 428 - . . scaffold354 WUBlastX LTR_Gypsy 36998 38152 315 - . . scaffold354 WUBlastX LTR_Gypsy 37022 38368 263 - . . scaffold354 WUBlastX LTR_Gypsy 37784 38728 27 - . . scaffold354 WUBlastX LTR_Gypsy 38648 38740 31 - . . scaffold354 WUBlastX LTR_Gypsy 38651 38800 28 - . . scaffold354 WUBlastX LTR_Gypsy-Cigr 40017 40220 34 - . . scaffold354 GLEAN mRNA 46016 92159 0.140194 - . ID=CGI_10025696; scaffold354 WUBlastX LTR_Gypsy 48741 48845 21 + . . scaffold354 WUBlastX LTR_DIRS 48801 49511 134 + . . scaffold354 WUBlastX LTR_DIRS 49636 51252 773 + . . scaffold354 TRF Tandem_Repeat 55714 55740 54 + . . scaffold354 TRF Tandem_Repeat 70926 70988 126 + . . scaffold354 WUBlastX LINE_RTE-X 72809 73513 35 + . . scaffold354 WUBlastX LINE_RTE-X 72893 73009 35 + . . scaffold354 WUBlastX LINE_RTE-X 73256 73615 26 + . . scaffold354 WUBlastX LINE_RTE-X 73262 73519 38 + . . scaffold354 GLEAN promoter 92160 93159 0.140194 - . ID=CGI_10025696; scaffold354 GLEAN mRNA 95724 98621 1 - . ID=CGI_10025697; scaffold354 TRF Tandem_Repeat 98471 98504 68 + . . scaffold354 GLEAN promoter 98622 99621 1 - . ID=CGI_10025697; scaffold354 GLEAN mRNA 102530 112163 0.835196 - . ID=CGI_10025698; scaffold354 GLEAN promoter 112164 113163 0.835196 - . ID=CGI_10025698; scaffold354 GLEAN promoter 122850 123849 0.496488 + . ID=CGI_10025699; scaffold354 GLEAN mRNA 123850 132843 0.496488 + . ID=CGI_10025699; scaffold354 WUBlastX LINE_Penelope 128298 128726 76 - . . scaffold354 TRF Tandem_Repeat 128759 128871 138 + . . scaffold354 TRF Tandem_Repeat 128948 129102 136 + . . scaffold354 WUBlastX LINE_Penelope 129611 129712 24 - . . scaffold354 TRF Tandem_Repeat 133178 133254 136 + . . scaffold354 WUBlastX LINE_Penelope 134735 135412 324 + . . scaffold354 TRF Tandem_Repeat 135455 135540 118 + . . scaffold354 TRF Tandem_Repeat 135612 135734 149 + . . scaffold354 GLEAN promoter 138640 139639 0.996603 + . ID=CGI_10025701; scaffold354 GLEAN mRNA 139508 142225 0.54483 - . ID=CGI_10025700; scaffold354 GLEAN mRNA 139640 141904 0.996603 + . ID=CGI_10025701; scaffold354 WUBlastX LTR_Ngaro 140831 141037 100 + . . scaffold354 WUBlastX LTR_Ngaro 141037 141276 109 + . . scaffold354 GLEAN promoter 142226 143225 0.54483 - . ID=CGI_10025700; scaffold354 GLEAN mRNA 146881 148249 1 - . ID=CGI_10025702; scaffold354 GLEAN promoter 148250 149249 1 - . ID=CGI_10025702; scaffold354 TRF Tandem_Repeat 148285 148581 303 + . . scaffold354 GLEAN mRNA 153843 158381 0.511143 - . ID=CGI_10025703; scaffold354 GLEAN promoter 158382 159381 0.511143 - . ID=CGI_10025703; scaffold354 TRF Tandem_Repeat 170769 171041 399 + . . scaffold354 WUBlastX DNA_TcMar-Tc1 197036 198028 402 + . . scaffold354 TRF Tandem_Repeat 215928 217214 1672 + . . scaffold354 GLEAN promoter 222574 223573 0.999994 + . ID=CGI_10025704; scaffold354 GLEAN mRNA 223574 224944 0.999994 + . ID=CGI_10025704; scaffold354 TRF Tandem_Repeat 226863 226911 98 + . . scaffold354 GLEAN mRNA 227071 229095 0.999999 - . ID=CGI_10025705; scaffold354 GLEAN promoter 229096 230095 0.999999 - . ID=CGI_10025705; scaffold354 TRF Tandem_Repeat 231750 231804 110 + . . scaffold354 GLEAN promoter 232526 233525 0.999996 + . ID=CGI_10025706; scaffold354 GLEAN mRNA 233526 238862 0.999996 + . ID=CGI_10025706; scaffold354 GLEAN mRNA 243196 253358 1 - . ID=CGI_10025707; scaffold354 GLEAN promoter 248068 249067 1 + . ID=CGI_10025708; scaffold354 GLEAN mRNA 249068 250721 1 + . ID=CGI_10025708; scaffold354 GLEAN promoter 253359 254358 1 - . ID=CGI_10025707; scaffold354 GLEAN promoter 254486 255485 1 + . ID=CGI_10025710; scaffold354 GLEAN mRNA 254524 260354 1 - . ID=CGI_10025709; scaffold354 GLEAN mRNA 255486 272245 1 + . ID=CGI_10025710; scaffold354 GLEAN promoter 260355 261354 1 - . ID=CGI_10025709; scaffold354 TRF Tandem_Repeat 268020 268067 80 + . . scaffold354 GLEAN mRNA 275441 288253 0.996199 - . ID=CGI_10025711; scaffold354 GLEAN promoter 288254 289253 0.996199 - . ID=CGI_10025711; scaffold354 WUBlastX LTR_Pao 289930 290157 24 - . . scaffold354 WUBlastX LINE_RTE-X 292807 293214 81 - . . scaffold354 WUBlastX LINE_RTE-X 292903 293226 93 - . . scaffold354 GLEAN promoter 298133 299132 1 + . ID=CGI_10025712; scaffold354 GLEAN mRNA 299133 304439 1 + . ID=CGI_10025712; scaffold354 TRF Tandem_Repeat 300056 300082 54 + . . scaffold354 GLEAN promoter 308758 309757 1 + . ID=CGI_10025713; scaffold354 GLEAN mRNA 309758 312985 1 + . ID=CGI_10025713; scaffold354 TRF Tandem_Repeat 311403 311460 116 + . . scaffold354 GLEAN mRNA 325022 329239 0.558395 - . ID=CGI_10025714; scaffold354 GLEAN promoter 329240 330239 0.558395 - . ID=CGI_10025714; scaffold354 GLEAN mRNA 329540 330202 0.991767 - . ID=CGI_10025715; scaffold354 GLEAN promoter 330203 331202 0.991767 - . ID=CGI_10025715; scaffold354 WUBlastX LINE_CR1 337147 337380 22 + . . scaffold354 WUBlastX LINE_CR1 337216 338082 169 + . . scaffold354 WUBlastX LINE_CR1 337849 338217 81 + . . scaffold354 WUBlastX LINE_CR1 337873 338298 36 + . . scaffold354 GLEAN mRNA 338418 353673 1 - . ID=CGI_10025716; scaffold354 GLEAN promoter 352555 353554 0.999943 + . ID=CGI_10025717; scaffold354 GLEAN mRNA 353555 359270 0.999943 + . ID=CGI_10025717; scaffold354 GLEAN promoter 353674 354673 1 - . ID=CGI_10025716; scaffold354 TRF Tandem_Repeat 354060 354958 1604 + . . scaffold354 GLEAN promoter 360659 361658 0.999843 + . ID=CGI_10025718; scaffold354 GLEAN mRNA 361659 368507 0.999843 + . ID=CGI_10025718; scaffold354 TRF Tandem_Repeat 386216 386245 60 + . . scaffold354 TRF Tandem_Repeat 387526 387570 90 + . . scaffold354 WUBlastX LINE_L1 390848 390988 25 - . . scaffold354 WUBlastX LINE_L1-Tx1 391059 391565 121 - . . scaffold354 WUBlastX LINE_L1-Tx1 391407 391595 51 - . . scaffold354 WUBlastX LINE_L1 391736 391876 23 - . . scaffold354 WUBlastX LINE_L1-Tx1 391781 391948 22 - . . scaffold354 TRF Tandem_Repeat 396113 396137 50 + . . scaffold354 GLEAN mRNA 397434 397808 0.999212 - . ID=CGI_10025719; scaffold354 WUBlastX LTR_Gypsy 397485 397691 44 - . . scaffold354 WUBlastX LTR_Gypsy 397545 397724 36 - . . scaffold354 GLEAN promoter 397809 398808 0.999212 - . ID=CGI_10025719; scaffold354 TRF Tandem_Repeat 403197 403235 78 + . . scaffold354 TRF Tandem_Repeat 417476 417512 74 + . . scaffold354 TRF Tandem_Repeat 419460 419485 52 + . . scaffold354 TRF Tandem_Repeat 425309 425397 162 + . . scaffold354 TRF Tandem_Repeat 426488 426528 82 + . . scaffold354 TRF Tandem_Repeat 434855 434913 77 + . . scaffold354 TRF Tandem_Repeat 443369 443409 82 + . . scaffold354 TRF Tandem_Repeat 469748 469839 98 + . . scaffold354 TRF Tandem_Repeat 470424 470515 112 + . . scaffold354 TRF Tandem_Repeat 471491 471543 106 + . . scaffold354 TRF Tandem_Repeat 473205 473246 59 + . . scaffold354 TRF Tandem_Repeat 475296 475341 92 + . . scaffold354 WUBlastX DNA_TcMar-Marin 475911 475970 25 - . . scaffold354 WUBlastX DNA_TcMar-Marin 475988 476086 40 - . . scaffold354 WUBlastX DNA_TcMar-Marin 476003 476374 53 - . . scaffold354 WUBlastX DNA_TcMar-Marin 476311 476772 97 - . . scaffold354 WUBlastX DNA_TcMar-Marin 476413 476784 98 - . . scaffold354 GLEAN mRNA 486223 493126 0.637462 - . ID=CGI_10025720; scaffold354 WUBlastX LINE_L2 488456 488821 99 - . . scaffold354 WUBlastX LINE_L2 488456 488923 76 - . . scaffold354 WUBlastX LINE_L2 489194 489385 45 - . . scaffold354 WUBlastX LINE_L2 489301 490191 259 - . . scaffold354 WUBlastX LINE_L2 489388 490545 38 - . . scaffold354 WUBlastX LINE_L2 489868 490329 119 - . . scaffold354 GLEAN promoter 493127 494126 0.637462 - . ID=CGI_10025720; scaffold354 GLEAN promoter 499565 500564 0.99024 + . ID=CGI_10025721; scaffold354 GLEAN mRNA 500565 523276 0.99024 + . ID=CGI_10025721; scaffold354 GLEAN promoter 524695 525694 0.77691 + . ID=CGI_10025722; scaffold354 GLEAN mRNA 525695 527569 0.77691 + . ID=CGI_10025722; scaffold354 GLEAN promoter 533405 534404 0.999996 + . ID=CGI_10025723; scaffold354 GLEAN mRNA 534405 534974 0.999996 + . ID=CGI_10025723; scaffold354 TRF Tandem_Repeat 537231 537313 71 + . . scaffold354 GLEAN promoter 540255 541254 0.995189 + . ID=CGI_10025724; scaffold354 GLEAN mRNA 541255 541824 0.995189 + . ID=CGI_10025724; scaffold354 GLEAN promoter 555702 556701 1 + . ID=CGI_10025726; scaffold354 GLEAN mRNA 555765 556316 1 - . ID=CGI_10025725; scaffold354 GLEAN promoter 556317 557316 1 - . ID=CGI_10025725; scaffold354 GLEAN mRNA 556702 565229 1 + . ID=CGI_10025726; scaffold354 GLEAN mRNA 566765 596153 0.512039 - . ID=CGI_10025727; scaffold354 TRF Tandem_Repeat 576184 577255 1454 + . . scaffold354 TRF Tandem_Repeat 578886 578943 91 + . . scaffold354 TRF Tandem_Repeat 578886 578935 64 + . . scaffold354 TRF Tandem_Repeat 578889 578942 56 + . . scaffold354 TRF Tandem_Repeat 580340 580411 76 + . . scaffold354 TRF Tandem_Repeat 585788 585829 84 + . . scaffold354 TRF Tandem_Repeat 589762 589969 154 + . . scaffold354 TRF Tandem_Repeat 589783 589969 92 + . . scaffold354 GLEAN promoter 596154 597153 0.512039 - . ID=CGI_10025727; scaffold354 GLEAN mRNA 597290 603254 1 - . ID=CGI_10025728; scaffold354 TRF Tandem_Repeat 598757 598805 71 + . . scaffold354 GLEAN promoter 603255 604254 1 - . ID=CGI_10025728; scaffold354 TRF Tandem_Repeat 613292 613344 106 + . . scaffold354 GLEAN mRNA 617531 618169 0.428175 - . ID=CGI_10025729; scaffold354 TRF Tandem_Repeat 617793 617825 57 + . . scaffold354 GLEAN promoter 618170 619169 0.428175 - . ID=CGI_10025729; scaffold354 TRF Tandem_Repeat 618324 619087 392 + . . scaffold354 TRF Tandem_Repeat 618405 619039 454 + . . scaffold354 TRF Tandem_Repeat 618473 621397 916 + . . scaffold354 TRF Tandem_Repeat 618512 621265 1026 + . . scaffold354 TRF Tandem_Repeat 619164 619496 127 + . . scaffold354 TRF Tandem_Repeat 620001 620169 105 + . . scaffold354 TRF Tandem_Repeat 620946 621114 105 + . . scaffold354 TRF Tandem_Repeat 624187 624235 66 + . . scaffold354 TRF Tandem_Repeat 624998 625042 90 + . . scaffold354 GLEAN mRNA 629926 643634 0.980401 - . ID=CGI_10025730; scaffold354 GLEAN promoter 643635 644634 0.980401 - . ID=CGI_10025730; scaffold354 TRF Tandem_Repeat 644295 644353 100 + . . scaffold354 GLEAN promoter 646796 647795 1 + . ID=CGI_10025731; scaffold354 GLEAN mRNA 647796 664384 1 + . ID=CGI_10025731; scaffold354 GLEAN promoter 664493 665492 1 + . ID=CGI_10025732; scaffold354 GLEAN mRNA 665493 670389 1 + . ID=CGI_10025732; scaffold354 GLEAN promoter 671072 672071 0.552133 + . ID=CGI_10025733; scaffold354 GLEAN mRNA 672072 672840 0.552133 + . ID=CGI_10025733; scaffold354 TRF Tandem_Repeat 676701 676767 134 + . . scaffold354 TRF Tandem_Repeat 676832 676897 125 + . . scaffold354 WUBlastX LINE_L2 681050 681532 47 + . . scaffold354 WUBlastX LINE_L1-Tx1 681128 681589 308 + . . scaffold354 GLEAN promoter 683389 684388 0.175247 + . ID=CGI_10025734; scaffold354 GLEAN mRNA 684389 702263 0.175247 + . ID=CGI_10025734; scaffold354 TRF Tandem_Repeat 691880 692057 71 + . . scaffold354 TRF Tandem_Repeat 692714 692749 72 + . . scaffold354 TRF Tandem_Repeat 692913 692949 74 + . . scaffold354 TRF Tandem_Repeat 693147 693194 96 + . . scaffold354 TRF Tandem_Repeat 693306 693358 97 + . . scaffold354 TRF Tandem_Repeat 694405 694582 89 + . . scaffold354 WUBlastX LINE_RTE-BovB 697802 697942 27 - . . scaffold354 WUBlastX LINE_RTE-BovB 697920 698126 24 - . . scaffold354 TRF Tandem_Repeat 700217 700253 74 + . . scaffold354 WUBlastX LINE_RTE-BovB 710590 710802 117 - . . scaffold354 TRF Tandem_Repeat 711572 711618 87 + . . scaffold354 TRF Tandem_Repeat 723641 723719 158 + . . scaffold354 TRF Tandem_Repeat 723860 723910 70 + . . scaffold354 WUBlastX DNA_TcMar-Marin 726554 726835 40 + . . scaffold354 WUBlastX DNA_TcMar-Marin 726602 726835 47 + . . scaffold354 TRF Tandem_Repeat 732740 732767 56 + . . scaffold354 TRF Tandem_Repeat 739805 740134 263 + . . scaffold354 WUBlastX LTR_Ngaro 746636 747445 54 + . . scaffold354 WUBlastX LTR_DIRS 748193 748366 41 - . . scaffold354 WUBlastX LTR_DIRS 748360 748476 46 - . . scaffold354 WUBlastX LTR_DIRS 748479 749168 146 - . . scaffold354 WUBlastX LTR_DIRS 748479 749009 267 - . . scaffold354 WUBlastX LTR_DIRS 749137 750951 556 - . . scaffold354 WUBlastX LTR_DIRS 750987 751361 64 - . . scaffold354 WUBlastX LTR_DIRS 751182 751355 72 - . . scaffold354 WUBlastX LTR_DIRS 751448 751681 61 - . . scaffold354 WUBlastX LTR_Ngaro 759136 759258 53 + . . scaffold354 WUBlastX LTR_Ngaro 759270 759575 80 + . . scaffold354 GLEAN mRNA 762020 786715 0.810414 - . ID=CGI_10025736; scaffold354 GLEAN promoter 778704 779703 0.593391 + . ID=CGI_10025737; scaffold354 GLEAN mRNA 779704 787963 0.593391 + . ID=CGI_10025737; scaffold354 TRF Tandem_Repeat 781515 781547 66 + . . scaffold354 GLEAN promoter 786716 787715 0.810414 - . ID=CGI_10025736; scaffold354 GLEAN mRNA 789292 794805 0.742842 - . ID=CGI_10025738; scaffold354 WUBlastX DNA_TcMar-Tc1 791358 792068 313 - . . scaffold354 WUBlastX DNA_TcMar-Tc1 792092 792187 33 - . . scaffold354 GLEAN promoter 794806 795805 0.742842 - . ID=CGI_10025738; scaffold354 GLEAN mRNA 794939 796641 0.915322 - . ID=CGI_10025739; scaffold354 GLEAN promoter 796642 797641 0.915322 - . ID=CGI_10025739; scaffold354 GLEAN mRNA 807587 810286 1 - . ID=CGI_10025740; scaffold354 GLEAN promoter 810287 811286 1 - . ID=CGI_10025740; scaffold354 GLEAN mRNA 812801 813106 0.999039 - . ID=CGI_10025741; scaffold354 GLEAN promoter 813107 814106 0.999039 - . ID=CGI_10025741; scaffold354 GLEAN mRNA 813128 819396 0.996624 - . ID=CGI_10025742; scaffold354 GLEAN promoter 819397 820396 0.996624 - . ID=CGI_10025742; scaffold354 GLEAN mRNA 819477 820361 0.996554 - . ID=CGI_10025743; scaffold354 GLEAN promoter 820362 821361 0.996554 - . ID=CGI_10025743; scaffold354 TRF Tandem_Repeat 824709 824785 50 + . . scaffold354 TRF Tandem_Repeat 824709 824785 64 + . . scaffold354 TRF Tandem_Repeat 824741 824782 54 + . . scaffold354 GLEAN promoter 831423 832422 0.889144 + . ID=CGI_10025744; scaffold354 GLEAN mRNA 832423 836864 0.889144 + . ID=CGI_10025744; scaffold354 TRF Tandem_Repeat 835953 835980 56 + . . scaffold354 TRF Tandem_Repeat 842001 842097 135 + . . scaffold354 TRF Tandem_Repeat 845689 845819 226 + . . scaffold354 TRF Tandem_Repeat 846963 846997 52 + . . scaffold354 TRF Tandem_Repeat 847050 847079 60 + . . scaffold354 TRF Tandem_Repeat 851678 851725 78 + . . scaffold354 TRF Tandem_Repeat 851771 851805 52 + . . scaffold354 TRF Tandem_Repeat 854331 854639 318 + . . scaffold354 TRF Tandem_Repeat 873193 873257 76 + . . scaffold354 TRF Tandem_Repeat 874694 874764 99 + . . scaffold354 TRF Tandem_Repeat 875402 875452 68 + . . scaffold354 WUBlastX DNA_TcMar-Tc1 876836 876889 23 - . . scaffold354 WUBlastX DNA_TcMar-Tc1 876851 876889 23 - . . scaffold354 WUBlastX DNA_TcMar-Tc1 877548 877907 63 - . . scaffold354 WUBlastX DNA_TcMar-Tc1 877629 877904 111 - . . scaffold354 WUBlastX DNA_TcMar-Tc1 877632 878396 75 - . . scaffold354 TRF Tandem_Repeat 902292 902370 55 + . . scaffold354 TRF Tandem_Repeat 902361 902563 108 + . . scaffold354 WUBlastX LTR_Ngaro 908309 908572 79 + . . scaffold354 WUBlastX LINE_L1-Tx1 913545 913823 31 - . . scaffold354 WUBlastX LINE_RTE-X 921766 921948 62 + . . scaffold354 TRF Tandem_Repeat 922080 922171 157 + . . scaffold354 WUBlastX LINE_CR1-L2 922213 922482 123 + . . scaffold354 TRF Tandem_Repeat 932950 933115 138 + . . scaffold354 TRF Tandem_Repeat 936500 936601 73 + . . scaffold354 WUBlastX LTR_Ngaro 950802 951227 63 - . . scaffold354 WUBlastX LTR_Ngaro 951078 951320 54 - . . scaffold354 GLEAN mRNA 951910 952080 0.649154 - . ID=CGI_10025745; scaffold354 GLEAN promoter 952081 953080 0.649154 - . ID=CGI_10025745; scaffold354 WUBlastX DNA_Harbinger 954853 955011 51 + . . scaffold354 WUBlastX DNA_Harbinger 956758 956970 69 - . . scaffold354 TRF Tandem_Repeat 963461 963535 141 + . . scaffold354 TRF Tandem_Repeat 966498 967836 1523 + . . scaffold354 TRF Tandem_Repeat 966500 967836 1489 + . . scaffold354 TRF Tandem_Repeat 978385 978414 53 + . . scaffold354 TRF Tandem_Repeat 990959 991018 120 + . . scaffold354 WUBlastX LINE_RTE-X 1000780 1000905 22 + . . scaffold354 WUBlastX LINE_RTE-X 1000890 1001033 60 + . . scaffold354 TRF Tandem_Repeat 1021456 1021545 72 + . . scaffold354 TRF Tandem_Repeat 1021458 1021545 54 + . . scaffold354 WUBlastX LINE_L2 1022420 1022944 24 - . . scaffold354 WUBlastX LINE_RTE-X 1022420 1022785 27 - . . scaffold354 WUBlastX LTR_Gypsy 1023816 1024592 192 - . . scaffold354 WUBlastX LTR_Gypsy 1024005 1024592 297 - . . scaffold354 WUBlastX LTR_Gypsy 1024507 1025214 366 - . . scaffold354 WUBlastX LTR_Gypsy 1025196 1025948 183 - . . scaffold354 WUBlastX LTR_Gypsy 1025358 1026500 763 - . . scaffold354 WUBlastX LTR_Gypsy 1025499 1026704 559 - . . scaffold354 WUBlastX LTR_Gypsy 1026460 1026993 254 - . . scaffold354 WUBlastX LTR_Gypsy 1026460 1026909 261 - . . scaffold354 WUBlastX LTR_Gypsy 1026460 1027377 205 - . . scaffold354 WUBlastX LTR_Gypsy 1026484 1027185 241 - . . scaffold354 WUBlastX LTR_Gypsy-Cigr 1027374 1027430 20 - . . scaffold354 TRF Tandem_Repeat 1029670 1029735 132 + . . scaffold354 WUBlastX LINE_Penelope 1035850 1036557 220 - . . scaffold354 WUBlastX LINE_Penelope 1035901 1036710 190 - . . scaffold354 WUBlastX LINE_L1 1039680 1040621 54 + . . scaffold354 WUBlastX LINE_L1 1039818 1040597 251 + . . scaffold354 WUBlastX LINE_RTE-X 1040703 1041503 250 + . . scaffold354 WUBlastX LINE_RTE-X 1041339 1041587 29 + . . scaffold354 TRF Tandem_Repeat 1056760 1056791 64 + . . scaffold354 GLEAN promoter 1058586 1059585 0.998817 + . ID=CGI_10025746; scaffold354 GLEAN mRNA 1059586 1060524 0.998817 + . ID=CGI_10025746; scaffold354 GLEAN mRNA 1068987 1090499 0.699282 - . ID=CGI_10025747; scaffold354 TRF Tandem_Repeat 1076053 1076104 104 + . . scaffold354 GLEAN promoter 1090500 1091499 0.699282 - . ID=CGI_10025747; scaffold35406 GLEAN mRNA 1505 18996 0.688101 - . ID=CGI_10001499; scaffold35406 TRF Tandem_Repeat 2908 3004 142 + . . scaffold35406 WUBlastX LTR_Gypsy-Cigr 9065 9145 25 - . . scaffold35406 WUBlastX LTR_Gypsy 9833 10459 58 - . . scaffold35406 WUBlastX LTR_Gypsy 9965 10636 112 - . . scaffold35406 WUBlastX RC_Helitron 13297 13353 24 + . . scaffold35406 WUBlastX RC_Helitron 13388 14164 129 + . . scaffold35406 WUBlastX RC_Helitron 14003 14485 144 + . . scaffold35406 WUBlastX LINE_Jockey 16155 16388 43 + . . scaffold35406 WUBlastX DNA_P 16740 17912 239 - . . scaffold35406 WUBlastX DNA_P 17929 18162 54 - . . scaffold35406 GLEAN promoter 18997 19996 0.688101 - . ID=CGI_10001499; scaffold35410 GLEAN promoter 1 842 0.537592 + . ID=CGI_10001493; scaffold35410 GLEAN mRNA 843 14280 0.537592 + . ID=CGI_10001493; scaffold35410 GLEAN promoter 13831 14830 0.999068 + . ID=CGI_10001494; scaffold35410 GLEAN mRNA 14831 15919 0.999068 + . ID=CGI_10001494; scaffold35410 GLEAN mRNA 19445 20527 0.999068 - . ID=CGI_10001495; scaffold35410 GLEAN promoter 20528 21527 0.999068 - . ID=CGI_10001495; scaffold35430 WUBlastX LINE_RTE-BovB 2276 2467 62 - . . scaffold35430 GLEAN mRNA 2814 7195 0.999106 - . ID=CGI_10001512; scaffold35430 GLEAN promoter 7196 8195 0.999106 - . ID=CGI_10001512; scaffold35430 WUBlastX LINE_RTE-X 12276 13127 254 + . . scaffold35430 TRF Tandem_Repeat 16446 16488 86 + . . scaffold35430 WUBlastX LINE_L1-Tx1 16937 17005 20 + . . scaffold35430 WUBlastX LINE_RTE-X 17040 17270 84 + . . scaffold35430 WUBlastX LINE_RTE-X 17267 18271 506 + . . scaffold35430 WUBlastX LINE_RTE-X 18282 18512 34 + . . scaffold35430 WUBlastX LINE_RTE-X 18282 18596 30 + . . scaffold35430 WUBlastX LINE_RTE-X 18318 18491 47 + . . scaffold35430 GLEAN mRNA 19694 20772 0.999776 - . ID=CGI_10001513; scaffold35430 GLEAN promoter 20773 21772 0.999776 - . ID=CGI_10001513; scaffold35430 TRF Tandem_Repeat 24304 24369 107 + . . scaffold35430 TRF Tandem_Repeat 24304 24362 82 + . . scaffold35430 TRF Tandem_Repeat 24307 24368 63 + . . scaffold35432 WUBlastX LINE_L1-Tx1 34 186 38 - . . scaffold35432 WUBlastX LINE_L1-Tx1 67 183 60 - . . scaffold35432 WUBlastX LINE_L1 73 216 26 - . . scaffold35432 WUBlastX LINE_L1-Tx1 240 317 21 - . . scaffold35432 WUBlastX LINE_L1-Tx1 404 937 117 - . . scaffold35432 GLEAN promoter 1127 2126 0.544675 + . ID=CGI_10001516; scaffold35432 GLEAN mRNA 2127 22840 0.544675 + . ID=CGI_10001516; scaffold35432 TRF Tandem_Repeat 2400 2450 102 + . . scaffold35432 TRF Tandem_Repeat 22879 22925 85 + . . scaffold35432 TRF Tandem_Repeat 23125 23181 114 + . . scaffold35432 TRF Tandem_Repeat 23181 23211 62 + . . scaffold35436 GLEAN mRNA 2065 16197 0.999949 - . ID=CGI_10001533; scaffold35436 GLEAN promoter 16198 17197 0.999949 - . ID=CGI_10001533; scaffold35436 GLEAN mRNA 18458 18838 0.999068 - . ID=CGI_10001534; scaffold35436 GLEAN promoter 18839 19838 0.999068 - . ID=CGI_10001534; scaffold35438 GLEAN mRNA 3327 22372 0.999028 - . ID=CGI_10001514; scaffold35438 TRF Tandem_Repeat 4907 4965 118 + . . scaffold35438 WUBlastX LINE_L1 9293 9460 20 - . . scaffold35438 WUBlastX LINE_L1-Tx1 9529 10494 52 - . . scaffold35438 WUBlastX LINE_L1-Tx1 9886 10398 62 - . . scaffold35438 WUBlastX LINE_L1-Tx1 10027 10398 62 - . . scaffold35438 WUBlastX LINE_L1 10403 11299 322 - . . scaffold35438 WUBlastX LINE_L1-Tx1 11301 11948 244 - . . scaffold35438 WUBlastX LINE_L1 11535 12023 46 - . . scaffold35438 WUBlastX LINE_L1-Tx1 12025 12810 187 - . . scaffold35438 WUBlastX LINE_CR1 13545 13721 61 - . . scaffold35438 WUBlastX LINE_L1-Tx1 13738 14004 112 - . . scaffold35438 WUBlastX DNA_MuDR 14442 14678 78 - . . scaffold35438 WUBlastX DNA_MuDR 14851 15249 47 - . . scaffold35438 TRF Tandem_Repeat 15326 15353 56 + . . scaffold35438 TRF Tandem_Repeat 17362 17398 74 + . . scaffold35438 GLEAN promoter 21653 22652 0.996819 + . ID=CGI_10001515; scaffold35438 WUBlastX LTR_Gypsy 22332 22679 51 + . . scaffold35438 GLEAN promoter 22373 23372 0.999028 - . ID=CGI_10001514; scaffold35438 WUBlastX LTR_Pao 22458 23060 50 + . . scaffold35438 GLEAN mRNA 22653 23117 0.996819 + . ID=CGI_10001515; scaffold35438 WUBlastX DNA_Harbinger 23440 23544 24 + . . scaffold35438 WUBlastX DNA_Harbinger 23449 23526 27 + . . scaffold35438 WUBlastX DNA_Harbinger 23541 23996 119 + . . scaffold35438 WUBlastX DNA_Harbinger 23550 23933 175 + . . scaffold35444 TRF Tandem_Repeat 445 485 82 + . . scaffold35444 GLEAN mRNA 591 6430 0.999654 - . ID=CGI_10001555; scaffold35444 TRF Tandem_Repeat 1987 2109 176 + . . scaffold35444 TRF Tandem_Repeat 5335 5371 56 + . . scaffold35444 WUBlastX LTR_Gypsy 5725 5934 41 - . . scaffold35444 WUBlastX LTR_Gypsy-Cigr 5770 5931 57 - . . scaffold35444 WUBlastX LTR_Gypsy-Cigr 5925 6095 63 - . . scaffold35444 WUBlastX LTR_Gypsy 5940 6185 53 - . . scaffold35444 WUBlastX LTR_Gypsy 6125 6250 40 - . . scaffold35444 GLEAN promoter 6431 7430 0.999654 - . ID=CGI_10001555; scaffold35444 GLEAN mRNA 6910 17891 0.674039 - . ID=CGI_10001556; scaffold35444 TRF Tandem_Repeat 8265 8342 147 + . . scaffold35444 TRF Tandem_Repeat 9718 9770 52 + . . scaffold35444 GLEAN promoter 17892 18891 0.674039 - . ID=CGI_10001556; scaffold35444 TRF Tandem_Repeat 25550 25579 51 + . . scaffold35446 TRF Tandem_Repeat 218 254 74 + . . scaffold35446 TRF Tandem_Repeat 2624 2659 56 + . . scaffold35446 TRF Tandem_Repeat 3208 3258 93 + . . scaffold35446 GLEAN mRNA 4258 8066 0.999998 - . ID=CGI_10001508; scaffold35446 GLEAN promoter 8067 9066 0.999998 - . ID=CGI_10001508; scaffold35446 TRF Tandem_Repeat 8187 8251 130 + . . scaffold35446 GLEAN promoter 8383 9382 0.481187 + . ID=CGI_10001509; scaffold35446 GLEAN mRNA 9383 9775 0.481187 + . ID=CGI_10001509; scaffold35446 GLEAN promoter 10417 11416 0.682042 + . ID=CGI_10001510; scaffold35446 GLEAN mRNA 11417 21109 0.682042 + . ID=CGI_10001510; scaffold35446 WUBlastX LTR_Gypsy 17655 17729 24 - . . scaffold35446 WUBlastX LTR_Gypsy 17885 18118 76 - . . scaffold35446 WUBlastX LTR_ERV1 18141 18650 57 - . . scaffold35446 WUBlastX LTR_Gypsy 18228 18668 266 - . . scaffold35446 WUBlastX LTR_Gypsy 18267 18758 97 - . . scaffold35446 GLEAN promoter 22259 23258 0.999996 + . ID=CGI_10001511; scaffold35446 GLEAN mRNA 23259 24415 0.999996 + . ID=CGI_10001511; scaffold35466 WUBlastX LINE_L1-Tx1 6 239 85 - . . scaffold35466 WUBlastX LINE_L1 9 281 47 - . . scaffold35466 TRF Tandem_Repeat 9909 10193 157 + . . scaffold35466 WUBlastX LINE_L1-Tx1 14485 14640 34 + . . scaffold35466 WUBlastX LINE_L1-Tx1 14512 14640 55 + . . scaffold35466 WUBlastX LINE_L1 14536 15399 173 + . . scaffold35466 WUBlastX LINE_L1 15244 15429 21 + . . scaffold35466 WUBlastX DNA_TcMar-Tc1 17777 17986 42 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 17843 17986 49 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 17876 17986 61 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 17903 18016 33 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 18115 18411 89 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 18285 18476 45 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 18327 18683 20 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 18540 18758 96 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 18731 19135 126 - . . scaffold35466 WUBlastX DNA_TcMar-Tc1 19146 19316 33 - . . scaffold35470 GLEAN mRNA 4948 24668 0.999885 - . ID=CGI_10001517; scaffold35470 GLEAN promoter 24669 24817 0.999885 - . ID=CGI_10001517; scaffold35472 GLEAN promoter 1 345 0.999949 + . ID=CGI_10001520; scaffold35472 GLEAN mRNA 346 3619 0.999949 + . ID=CGI_10001520; scaffold35472 GLEAN promoter 3952 4951 1 + . ID=CGI_10001521; scaffold35472 GLEAN mRNA 4952 11990 1 + . ID=CGI_10001521; scaffold35472 GLEAN promoter 13952 14951 0.99993 + . ID=CGI_10001522; scaffold35472 GLEAN mRNA 14952 24609 0.99993 + . ID=CGI_10001522; scaffold35476 GLEAN mRNA 3529 8637 0.722047 - . ID=CGI_10001523; scaffold35476 GLEAN promoter 8638 9637 0.722047 - . ID=CGI_10001523; scaffold35476 WUBlastX LINE_RTE-BovB 10860 11132 47 + . . scaffold35476 WUBlastX LINE_RTE-X 10944 11279 82 + . . scaffold35476 WUBlastX LINE_RTE-X 10944 11123 83 + . . scaffold35476 WUBlastX LINE_RTE-X 11282 11494 87 + . . scaffold35476 WUBlastX LINE_RTE-X 11467 11721 92 + . . scaffold35476 WUBlastX LINE_RTE-X 11645 12052 79 + . . scaffold35476 WUBlastX LINE_RTE-X 11660 12262 54 + . . scaffold35476 WUBlastX LINE_RTE-X 12069 12344 31 + . . scaffold35476 WUBlastX LINE_RTE-X 13520 13801 131 + . . scaffold35476 WUBlastX LINE_RTE-BovB 13532 13855 99 + . . scaffold35476 WUBlastX LINE_RTE-X 13789 14289 66 + . . scaffold35476 WUBlastX LINE_RTE-X 14289 14486 35 + . . scaffold35476 TRF Tandem_Repeat 23121 23174 74 + . . scaffold35478 GLEAN mRNA 1378 24674 0.687089 - . ID=CGI_10001535; scaffold35478 TRF Tandem_Repeat 9057 9092 72 + . . scaffold35478 WUBlastX DNA_Crypton 9653 10273 56 + . . scaffold35478 WUBlastX DNA_Crypton 10646 10987 69 + . . scaffold35478 GLEAN promoter 15509 16508 0.999995 + . ID=CGI_10001536; scaffold35478 GLEAN mRNA 16509 17597 0.999995 + . ID=CGI_10001536; scaffold35478 GLEAN promoter 24675 25031 0.687089 - . ID=CGI_10001535; scaffold35478 TRF Tandem_Repeat 25004 25031 56 + . . scaffold35480 GLEAN promoter 13951 14950 0.912909 + . ID=CGI_10001524; scaffold35480 GLEAN mRNA 14951 22641 0.912909 + . ID=CGI_10001524; scaffold35486 GLEAN promoter 2014 3013 0.998273 + . ID=CGI_10001526; scaffold35486 GLEAN mRNA 3014 4358 0.998273 + . ID=CGI_10001526; scaffold35486 GLEAN mRNA 6054 6782 0.649599 - . ID=CGI_10001527; scaffold35486 GLEAN promoter 6783 7782 0.649599 - . ID=CGI_10001527; scaffold35486 GLEAN mRNA 8513 17205 0.999998 - . ID=CGI_10001528; scaffold35486 WUBlastX LINE_RTE-X 15426 16019 110 - . . scaffold35486 WUBlastX LINE_CR1-L2 16281 16514 37 - . . scaffold35486 GLEAN promoter 17206 18205 0.999998 - . ID=CGI_10001528; scaffold35486 GLEAN mRNA 17518 22651 1 - . ID=CGI_10001529; scaffold35486 GLEAN promoter 22652 23651 1 - . ID=CGI_10001529; scaffold35490 GLEAN mRNA 84 2074 1 - . ID=CGI_10001539; scaffold35490 GLEAN promoter 2075 3074 1 - . ID=CGI_10001539; scaffold35490 WUBlastX DNA_TcMar-Marin 4328 4474 46 + . . scaffold35490 WUBlastX DNA_TcMar-Marin 4575 4799 112 + . . scaffold35490 TRF Tandem_Repeat 12905 12963 118 + . . scaffold35490 TRF Tandem_Repeat 15865 16231 581 + . . scaffold35490 GLEAN promoter 17664 18663 0.999572 + . ID=CGI_10001540; scaffold35490 GLEAN mRNA 18664 19468 0.999572 + . ID=CGI_10001540; scaffold35490 WUBlastX LINE_L1-Tx1 19888 20805 210 - . . scaffold35508 TRF Tandem_Repeat 18247 18306 57 + . . scaffold35508 TRF Tandem_Repeat 18251 18312 90 + . . scaffold35508 TRF Tandem_Repeat 18271 18313 52 + . . scaffold35508 WUBlastX LINE_L1-Tx1 21820 22380 36 + . . scaffold35518 GLEAN promoter 17396 18395 1 + . ID=CGI_10001538; scaffold35518 GLEAN mRNA 18396 22046 1 + . ID=CGI_10001538; scaffold35530 GLEAN mRNA 5600 10809 0.611199 - . ID=CGI_10001563; scaffold35530 GLEAN promoter 9279 10278 1 + . ID=CGI_10001564; scaffold35530 GLEAN mRNA 10279 14561 1 + . ID=CGI_10001564; scaffold35530 GLEAN promoter 10810 11809 0.611199 - . ID=CGI_10001563; scaffold35530 GLEAN mRNA 19179 23371 1 - . ID=CGI_10001565; scaffold35530 GLEAN promoter 23372 24371 1 - . ID=CGI_10001565; scaffold35536 GLEAN mRNA 13770 14060 0.847131 - . ID=CGI_10001525; scaffold35536 GLEAN promoter 14061 15060 0.847131 - . ID=CGI_10001525; scaffold35538 TRF Tandem_Repeat 4660 5571 1105 + . . scaffold35538 GLEAN promoter 6074 7073 0.85441 + . ID=CGI_10001558; scaffold35538 GLEAN mRNA 7074 8907 0.85441 + . ID=CGI_10001558; scaffold35538 GLEAN promoter 13229 14228 0.828916 + . ID=CGI_10001559; scaffold35538 GLEAN mRNA 14229 24935 0.828916 + . ID=CGI_10001559; scaffold35538 TRF Tandem_Repeat 14483 14869 489 + . . scaffold35538 WUBlastX LINE_RTE-X 20932 21357 20 - . . scaffold35538 WUBlastX LINE_RTE-X 21118 21330 54 - . . scaffold35540 GLEAN mRNA 5367 24852 0.999626 - . ID=CGI_10001546; scaffold35540 GLEAN promoter 24853 25358 0.999626 - . ID=CGI_10001546; scaffold35558 TRF Tandem_Repeat 6271 6332 56 + . . scaffold35558 TRF Tandem_Repeat 6494 8014 2073 + . . scaffold35558 TRF Tandem_Repeat 14566 14728 120 + . . scaffold35558 WUBlastX LINE_L2 14802 15302 123 + . . scaffold35558 WUBlastX LINE_L2 14904 15449 62 + . . scaffold35558 WUBlastX LINE_CR1-L2 15099 15347 95 + . . scaffold35558 TRF Tandem_Repeat 16085 16139 110 + . . scaffold35558 TRF Tandem_Repeat 17775 17830 112 + . . scaffold35558 TRF Tandem_Repeat 20367 20391 50 + . . scaffold35568 WUBlastX LINE_L1-Tx1 51 2531 1053 + . . scaffold35568 WUBlastX LINE_L1 3103 3378 21 + . . scaffold35568 TRF Tandem_Repeat 4221 4259 78 + . . scaffold35568 WUBlastX DNA_PiggyBac 14014 14145 59 - . . scaffold35568 WUBlastX DNA_PiggyBac 15046 15111 23 - . . scaffold35568 WUBlastX DNA_PiggyBac 15420 15803 31 - . . scaffold35568 WUBlastX DNA_PiggyBac 15453 15752 69 - . . scaffold35568 GLEAN promoter 21814 22813 0.649583 + . ID=CGI_10001557; scaffold35568 GLEAN mRNA 22814 23239 0.649583 + . ID=CGI_10001557; scaffold35568 TRF Tandem_Repeat 24267 24317 102 + . . scaffold35574 WUBlastX LINE_L1-Tx1 2701 2826 28 - . . scaffold35574 WUBlastX LINE_L1 2767 3003 58 - . . scaffold35574 WUBlastX LINE_L1-Tx1 2770 3714 36 - . . scaffold35574 WUBlastX LINE_L1 2960 3094 75 - . . scaffold35574 WUBlastX LINE_L1-Tx1 2960 3283 57 - . . scaffold35574 WUBlastX LINE_L1 3469 3693 49 - . . scaffold35574 WUBlastX LINE_L1-Tx1 3753 3824 21 - . . scaffold35574 TRF Tandem_Repeat 10312 10377 51 + . . scaffold35574 TRF Tandem_Repeat 19430 19468 78 + . . scaffold35574 TRF Tandem_Repeat 19813 19904 71 + . . scaffold35574 TRF Tandem_Repeat 19866 19916 77 + . . scaffold35574 GLEAN promoter 22196 23195 0.733495 + . ID=CGI_10001570; scaffold35574 GLEAN mRNA 23196 23882 0.733495 + . ID=CGI_10001570; scaffold35574 TRF Tandem_Repeat 25738 25804 89 + . . scaffold35586 GLEAN mRNA 1040 23261 0.76476 - . ID=CGI_10001568; scaffold35586 GLEAN promoter 23262 24261 0.76476 - . ID=CGI_10001568; scaffold35598 WUBlastX LTR_Gypsy 4262 6577 912 + . . scaffold35598 WUBlastX LTR_Gypsy 5144 6577 969 + . . scaffold35598 WUBlastX LTR_Gypsy 6562 7605 893 + . . scaffold35598 WUBlastX LTR_Gypsy 7584 7904 296 + . . scaffold35598 WUBlastX LTR_Gypsy 7614 7964 157 + . . scaffold35616 GLEAN mRNA 2731 11531 0.999675 - . ID=CGI_10001571; scaffold35616 GLEAN promoter 11532 12531 0.999675 - . ID=CGI_10001571; scaffold35636 TRF Tandem_Repeat 11631 11677 85 + . . scaffold35636 WUBlastX LTR_Gypsy 16726 16803 23 + . . scaffold35636 WUBlastX LTR_DIRS 16919 17413 182 + . . scaffold35636 WUBlastX LTR_DIRS 17343 17453 88 + . . scaffold35636 WUBlastX LTR_DIRS 17343 17522 54 + . . scaffold35636 WUBlastX LTR_DIRS 17523 18107 222 + . . scaffold35636 WUBlastX LTR_DIRS 18660 18755 46 + . . scaffold35636 WUBlastX LTR_DIRS 18962 19120 82 + . . scaffold35636 WUBlastX LTR_Gypsy 21022 21642 33 + . . scaffold35636 WUBlastX LTR_Gypsy 21574 21675 28 + . . scaffold35636 WUBlastX LTR_Gypsy 21574 21699 26 + . . scaffold35636 WUBlastX LTR_Gypsy 21770 22387 294 + . . scaffold35636 WUBlastX LTR_Gypsy 21890 22387 303 + . . scaffold35636 WUBlastX LTR_Gypsy 22393 23628 314 + . . scaffold35636 WUBlastX LTR_Gypsy 23949 24230 152 + . . scaffold35636 WUBlastX LTR_DIRS 24214 24807 67 + . . scaffold35636 WUBlastX LTR_DIRS 24459 25178 118 + . . scaffold35636 WUBlastX LTR_DIRS 25207 25308 36 + . . scaffold35636 WUBlastX LTR_DIRS 25303 25590 85 + . . scaffold35640 GLEAN mRNA 97 9677 0.997206 - . ID=CGI_10001574; scaffold35640 TRF Tandem_Repeat 1611 2025 618 + . . scaffold35640 GLEAN promoter 9678 10677 0.997206 - . ID=CGI_10001574; scaffold35640 WUBlastX LINE_Penelope 11023 11274 75 + . . scaffold35640 WUBlastX LINE_Penelope 11023 11184 83 + . . scaffold35640 TRF Tandem_Repeat 11729 12012 426 + . . scaffold35640 GLEAN promoter 11851 12850 0.99975 + . ID=CGI_10001575; scaffold35640 GLEAN mRNA 12851 13498 0.99975 + . ID=CGI_10001575; scaffold35640 WUBlastX LTR_Gypsy 13815 13943 32 + . . scaffold35640 WUBlastX LTR_Gypsy 13869 14195 20 + . . scaffold35640 WUBlastX LTR_Gypsy 13869 14126 56 + . . scaffold35640 WUBlastX LTR_Gypsy 14482 14775 73 + . . scaffold35640 WUBlastX LTR_Gypsy 14593 14769 87 + . . scaffold35640 WUBlastX LTR_Gypsy 14632 14811 77 + . . scaffold35640 GLEAN promoter 14635 15634 0.990831 + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy-Cigr 14641 14781 154 + . . scaffold35640 WUBlastX LTR_Gypsy 14813 14992 28 + . . scaffold35640 WUBlastX LTR_Gypsy 14937 15146 36 + . . scaffold35640 WUBlastX LTR_Gypsy-Gmr1 14970 15212 32 + . . scaffold35640 WUBlastX LTR_Gypsy-Cigr 14970 15155 92 + . . scaffold35640 GLEAN mRNA 15635 15904 0.990831 + . ID=CGI_10001576; scaffold35640 WUBlastX LTR_Gypsy 15978 16058 26 + . . scaffold35640 WUBlastX LINE_L1-Tx1 17935 21144 1342 + . . scaffold35640 WUBlastX LINE_CR1 21300 21704 122 + . . scaffold35640 WUBlastX LINE_CR1 21447 21704 237 + . . scaffold35640 WUBlastX LINE_CR1 21622 22509 332 + . . scaffold35640 WUBlastX LINE_CR1 21706 22452 630 + . . scaffold35640 WUBlastX LINE_Tad1? 21760 22683 169 + . . scaffold35640 WUBlastX LINE_CR1 23213 23299 26 + . . scaffold35640 WUBlastX LINE_CR1 23301 23483 103 + . . scaffold35680 GLEAN promoter 3803 4802 0.499735 + . ID=CGI_10001584; scaffold35680 GLEAN mRNA 4803 10626 0.499735 + . ID=CGI_10001584; scaffold35680 GLEAN mRNA 13684 23296 0.755114 - . ID=CGI_10001585; scaffold35680 GLEAN promoter 23297 24296 0.755114 - . ID=CGI_10001585; scaffold35694 WUBlastX DNA_TcMar-Tc1 15986 16153 22 + . . scaffold35694 WUBlastX DNA_TcMar-Tc1 16171 16311 33 + . . scaffold35694 WUBlastX LINE_RTE-BovB 17172 17312 41 - . . scaffold35694 WUBlastX LINE_R2-Hero 17450 17569 28 - . . scaffold35694 WUBlastX LINE_R2-Hero 17604 17819 38 - . . scaffold35694 WUBlastX LINE_R2-Hero 17840 18226 35 - . . scaffold35694 WUBlastX LINE_R2-Hero 17861 18085 41 - . . scaffold35694 WUBlastX LINE_R2-Hero 18208 18840 52 - . . scaffold35694 WUBlastX LINE_R2-Hero 18211 18702 72 - . . scaffold35694 WUBlastX LINE_R2-Hero 18712 18960 41 - . . scaffold35694 WUBlastX LINE_R2-Hero 18947 19123 82 - . . scaffold35694 WUBlastX LINE_R2-Hero 18998 19150 51 - . . scaffold35694 WUBlastX LINE_RTE-BovB 23226 23351 29 - . . scaffold35694 WUBlastX LINE_RTE-BovB 23933 24004 24 - . . scaffold357 GLEAN mRNA 22398 23257 1 - . ID=CGI_10003081; scaffold357 GLEAN promoter 23258 24257 1 - . ID=CGI_10003081; scaffold357 GLEAN mRNA 56230 60570 1 - . ID=CGI_10003082; scaffold357 GLEAN promoter 60571 61570 1 - . ID=CGI_10003082; scaffold35712 GLEAN mRNA 283 3507 0.772353 - . ID=CGI_10001588; scaffold35712 GLEAN promoter 2858 3857 0.47659 + . ID=CGI_10001589; scaffold35712 GLEAN promoter 3508 4507 0.772353 - . ID=CGI_10001588; scaffold35712 GLEAN mRNA 3858 24173 0.47659 + . ID=CGI_10001589; scaffold35712 WUBlastX LINE_RTE-X 5642 6160 99 + . . scaffold35712 WUBlastX LINE_RTE-X 5777 6160 144 + . . scaffold35712 WUBlastX LINE_Proto2 6080 6178 21 + . . scaffold35712 WUBlastX LINE_RTE-X 6243 6764 187 + . . scaffold35712 WUBlastX LINE_RTE-X 6532 7506 278 + . . scaffold35712 WUBlastX LINE_RTE-X 6754 7506 358 + . . scaffold35712 WUBlastX LINE_RTE-X 6754 7686 315 + . . scaffold35712 WUBlastX LINE_Jockey 7765 7827 22 + . . scaffold35712 WUBlastX LINE_L1 8249 8287 22 + . . scaffold35712 TRF Tandem_Repeat 8360 8398 78 + . . scaffold35712 TRF Tandem_Repeat 22289 22341 97 + . . scaffold35712 TRF Tandem_Repeat 22289 22344 67 + . . scaffold35724 GLEAN promoter 1801 2800 1 + . ID=CGI_10001594; scaffold35724 GLEAN mRNA 2801 3450 1 + . ID=CGI_10001594; scaffold35724 GLEAN mRNA 6117 12668 0.449898 - . ID=CGI_10001595; scaffold35724 GLEAN promoter 12376 13375 0.999999 + . ID=CGI_10001596; scaffold35724 GLEAN promoter 12669 13668 0.449898 - . ID=CGI_10001595; scaffold35724 GLEAN mRNA 13376 17719 0.999999 + . ID=CGI_10001596; scaffold35726 WUBlastX LINE_L1-Tx1 363 1550 89 - . . scaffold35726 TRF Tandem_Repeat 1754 1780 54 + . . scaffold35726 TRF Tandem_Repeat 9425 9499 102 + . . scaffold35726 WUBlastX DNA_TcMar-Marin 9919 10047 55 - . . scaffold35726 TRF Tandem_Repeat 22525 22594 140 + . . scaffold35726 WUBlastX DNA_TcMar-Marin 23193 23411 44 - . . scaffold35726 WUBlastX DNA_TcMar-Marin 23289 23411 60 - . . scaffold35726 WUBlastX DNA_TcMar-Marin 23325 23756 67 - . . scaffold35726 WUBlastX DNA_TcMar-Marin 23718 23786 36 - . . scaffold35726 TRF Tandem_Repeat 26633 26699 89 + . . scaffold35726 TRF Tandem_Repeat 27213 27241 58 + . . scaffold35732 WUBlastX LINE_RTE-X 2040 3056 198 - . . scaffold35732 WUBlastX LINE_RTE-X 2073 2933 218 - . . scaffold35732 WUBlastX LINE_RTE-X 2925 3137 63 - . . scaffold35732 TRF Tandem_Repeat 8534 8667 268 + . . scaffold35732 TRF Tandem_Repeat 19311 19352 50 + . . scaffold35754 GLEAN promoter 3426 4425 0.319321 + . ID=CGI_10001597; scaffold35754 GLEAN mRNA 4426 18574 0.319321 + . ID=CGI_10001597; scaffold35754 GLEAN mRNA 18474 26470 0.999997 - . ID=CGI_10001598; scaffold35754 GLEAN promoter 26471 27365 0.999997 - . ID=CGI_10001598; scaffold35772 GLEAN mRNA 335 838 0.999984 - . ID=CGI_10001605; scaffold35772 GLEAN promoter 839 1838 0.999984 - . ID=CGI_10001605; scaffold35796 WUBlastX LINE_Penelope 289 573 26 - . . scaffold35796 WUBlastX LINE_Penelope 361 630 73 - . . scaffold35796 TRF Tandem_Repeat 4009 5840 2078 + . . scaffold35796 TRF Tandem_Repeat 4009 5840 2359 + . . scaffold35796 WUBlastX LINE_L1-Tx1 13039 13155 30 - . . scaffold35796 WUBlastX LINE_L1-Tx1 13539 14150 22 - . . scaffold35796 WUBlastX LINE_L1-Tx1 13599 13814 23 - . . scaffold35796 WUBlastX LINE_L1-Tx1 13647 13733 32 - . . scaffold35796 WUBlastX LINE_L1-Tx1 13665 13733 40 - . . scaffold35796 WUBlastX LINE_L1 13744 13938 37 - . . scaffold35796 WUBlastX LINE_L1-Tx1 13786 13971 52 - . . scaffold35796 WUBlastX LINE_L1-Tx1 13831 13971 64 - . . scaffold35796 WUBlastX LINE_L1 14165 14779 72 - . . scaffold35796 WUBlastX LINE_L1-Tx1 14308 14931 101 - . . scaffold35796 WUBlastX LINE_L1-Tx1 14931 15392 66 - . . scaffold35796 WUBlastX LINE_L1-Tx1 14931 15242 122 - . . scaffold35796 WUBlastX LINE_L1-Tx1 15376 15960 25 - . . scaffold35796 WUBlastX LINE_L1 15529 16011 43 - . . scaffold358 WUBlastX LINE_RTE-X 6 224 87 - . . scaffold358 WUBlastX LINE_RTE-X 102 263 55 - . . scaffold358 WUBlastX LINE_RTE-X 215 358 43 - . . scaffold358 WUBlastX LINE_RTE-X 305 358 54 - . . scaffold358 WUBlastX LINE_RTE-X 334 621 36 - . . scaffold358 WUBlastX LINE_RTE-X 412 663 62 - . . scaffold358 WUBlastX LINE_RTE-X 415 621 89 - . . scaffold358 GLEAN promoter 1614 2613 0.781526 + . ID=CGI_10013015; scaffold358 GLEAN mRNA 2614 7079 0.781526 + . ID=CGI_10013015; scaffold358 GLEAN mRNA 7945 11895 0.558382 - . ID=CGI_10013016; scaffold358 TRF Tandem_Repeat 9689 9762 82 + . . scaffold358 GLEAN promoter 11896 12895 0.558382 - . ID=CGI_10013016; scaffold358 TRF Tandem_Repeat 12293 12356 128 + . . scaffold358 GLEAN promoter 12698 13697 1 + . ID=CGI_10013017; scaffold358 TRF Tandem_Repeat 12775 12803 58 + . . scaffold358 GLEAN mRNA 13698 18239 1 + . ID=CGI_10013017; scaffold358 WUBlastX LTR_Gypsy 19580 19669 21 + . . scaffold358 WUBlastX LTR_Gypsy 19732 19848 28 + . . scaffold358 WUBlastX LTR_Gypsy 19771 19995 66 + . . scaffold358 WUBlastX LTR_Gypsy 19964 20203 57 + . . scaffold358 WUBlastX LTR_Gypsy 20236 20616 21 + . . scaffold358 WUBlastX LTR_Gypsy 20427 20891 279 + . . scaffold358 WUBlastX LTR_Gypsy 20436 21005 192 + . . scaffold358 WUBlastX DNA_IS4EU 21060 21923 148 - . . scaffold358 WUBlastX DNA_Kolobok-IS4 21108 21764 257 - . . scaffold358 WUBlastX DNA_IS4EU 22018 22443 60 - . . scaffold358 WUBlastX DNA_IS4EU 22123 22587 20 - . . scaffold358 WUBlastX DNA_IS4EU 22174 22491 95 - . . scaffold358 GLEAN promoter 26522 27521 1 + . ID=CGI_10013018; scaffold358 GLEAN mRNA 27522 30622 1 + . ID=CGI_10013018; scaffold358 GLEAN mRNA 31453 31686 1 - . ID=CGI_10013019; scaffold358 GLEAN promoter 31687 32686 1 - . ID=CGI_10013019; scaffold358 GLEAN mRNA 32104 32484 0.635619 - . ID=CGI_10013020; scaffold358 GLEAN promoter 32485 33484 0.635619 - . ID=CGI_10013020; scaffold358 WUBlastX LINE_Penelope 34753 34968 23 - . . scaffold358 GLEAN mRNA 40830 41132 1 - . ID=CGI_10013021; scaffold358 GLEAN promoter 41133 42132 1 - . ID=CGI_10013021; scaffold358 TRF Tandem_Repeat 42753 42781 58 + . . scaffold358 WUBlastX LTR_Gypsy 42980 43348 105 - . . scaffold358 WUBlastX LTR_Gypsy 43064 43348 151 - . . scaffold358 WUBlastX LTR_Gypsy 43115 43405 132 - . . scaffold358 TRF Tandem_Repeat 54348 54407 75 + . . scaffold358 TRF Tandem_Repeat 54349 54414 105 + . . scaffold358 TRF Tandem_Repeat 54353 54414 97 + . . scaffold358 TRF Tandem_Repeat 54357 54414 53 + . . scaffold358 WUBlastX DNA_Zator 69667 70047 111 - . . scaffold358 WUBlastX DNA_Harbinger 71427 71594 23 + . . scaffold358 WUBlastX DNA_Harbinger 71593 71709 22 + . . scaffold358 WUBlastX DNA_Harbinger 71638 71691 26 + . . scaffold358 WUBlastX DNA_Harbinger 71696 72172 204 + . . scaffold358 GLEAN promoter 76410 77409 0.776402 + . ID=CGI_10013022; scaffold358 GLEAN mRNA 77410 77613 0.776402 + . ID=CGI_10013022; scaffold358 WUBlastX LINE_L1 79246 79734 48 - . . scaffold358 WUBlastX LINE_L1 79658 80041 61 - . . scaffold358 WUBlastX LINE_L1-Tx1 79775 80050 68 - . . scaffold358 WUBlastX LINE_L1-Tx1 80055 80579 161 - . . scaffold358 WUBlastX LINE_RTE-BovB 81799 82959 121 - . . scaffold358 WUBlastX LINE_L1 81976 83064 340 - . . scaffold358 WUBlastX LINE_L1-Tx1 82072 82959 590 - . . scaffold358 WUBlastX LINE_L1-Tx1 83018 83617 192 - . . scaffold358 WUBlastX LINE_L1-Tx1 83605 83859 98 - . . scaffold358 WUBlastX LINE_L1-Tx1 83644 83898 23 - . . scaffold358 WUBlastX LINE_L1-Tx1 83903 84058 43 - . . scaffold358 WUBlastX LINE_L1-Tx1 84057 84119 23 - . . scaffold358 WUBlastX LINE_L1 84270 84749 83 - . . scaffold358 WUBlastX LINE_L1 86695 87012 64 - . . scaffold358 WUBlastX DNA_Merlin 90248 90658 148 - . . scaffold358 WUBlastX DNA_Merlin 90946 91230 26 - . . scaffold358 WUBlastX LINE_L1-Tx1 93368 93727 53 - . . scaffold358 WUBlastX LINE_L1-Tx1 93368 93655 58 - . . scaffold358 WUBlastX LINE_L1-Tx1 93927 94562 191 - . . scaffold358 WUBlastX LINE_L1-Tx1 94413 94610 42 - . . scaffold358 WUBlastX LINE_L1-Tx1 94649 95212 140 - . . scaffold358 WUBlastX LINE_L1-Tx1 94751 95299 45 - . . scaffold358 WUBlastX LINE_L1 95759 96379 56 - . . scaffold358 WUBlastX LINE_L1 95855 96553 32 - . . scaffold358 WUBlastX LINE_L1-Tx1 97002 99341 919 - . . scaffold358 WUBlastX LINE_L2 98127 99566 96 - . . scaffold358 TRF Tandem_Repeat 102612 102651 80 + . . scaffold358 TRF Tandem_Repeat 112929 112993 130 + . . scaffold358 GLEAN mRNA 124068 124892 0.567143 - . ID=CGI_10013023; scaffold358 GLEAN promoter 124893 125892 0.567143 - . ID=CGI_10013023; scaffold358 GLEAN mRNA 127311 138997 0.861912 - . ID=CGI_10013024; scaffold358 TRF Tandem_Repeat 132311 132400 94 + . . scaffold358 TRF Tandem_Repeat 133329 134180 780 + . . scaffold358 TRF Tandem_Repeat 133329 134180 665 + . . scaffold358 TRF Tandem_Repeat 133479 134180 771 + . . scaffold358 WUBlastX LINE_RTE-X 136562 136663 24 + . . scaffold358 WUBlastX LINE_RTE-X 137155 137307 68 + . . scaffold358 WUBlastX LINE_RTE-X 137158 137346 37 + . . scaffold358 WUBlastX LINE_RTE-X 137370 137531 55 + . . scaffold358 WUBlastX LINE_RTE-X 137534 137722 24 + . . scaffold358 WUBlastX LINE_RTE-X 137549 137704 40 + . . scaffold358 GLEAN promoter 138998 139997 0.861912 - . ID=CGI_10013024; scaffold358 WUBlastX LINE_L2 141970 142095 20 + . . scaffold358 TRF Tandem_Repeat 143013 143073 58 + . . scaffold358 WUBlastX LINE_L2 143074 143319 133 + . . scaffold358 WUBlastX LINE_CR1 143116 143457 47 + . . scaffold358 WUBlastX LINE_CR1 143119 143367 49 + . . scaffold358 WUBlastX LINE_CR1-L2 143669 144220 50 - . . scaffold358 WUBlastX LINE_L2 143681 144103 96 - . . scaffold358 WUBlastX LINE_RTE-X 144234 144278 21 + . . scaffold358 WUBlastX LINE_CR1-L2 144586 144816 21 - . . scaffold358 WUBlastX LINE_CR1-L2 144631 144822 28 - . . scaffold358 WUBlastX LINE_CR1-L2 144661 144798 39 - . . scaffold358 WUBlastX LINE_CR1 144686 145033 55 - . . scaffold358 WUBlastX LINE_L2 144740 145036 154 - . . scaffold358 WUBlastX LINE_CR1-L2 145020 145262 93 - . . scaffold358 WUBlastX LINE_L2 145288 145578 165 - . . scaffold358 WUBlastX LINE_CR1-L2 145342 145584 176 - . . scaffold358 WUBlastX LINE_L2 145348 145731 165 - . . scaffold358 WUBlastX LINE_L2 145694 146263 173 - . . scaffold358 WUBlastX LINE_L2 146464 146511 23 - . . scaffold358 WUBlastX LINE_RTE-X 146519 146776 60 - . . scaffold358 GLEAN mRNA 149147 162717 0.750651 - . ID=CGI_10013025; scaffold358 GLEAN promoter 162718 163717 0.750651 - . ID=CGI_10013025; scaffold358 GLEAN promoter 173048 174047 0.999676 + . ID=CGI_10013026; scaffold358 GLEAN mRNA 174048 177619 0.999676 + . ID=CGI_10013026; scaffold358 GLEAN promoter 176964 177963 0.998801 + . ID=CGI_10013027; scaffold358 GLEAN mRNA 177964 190864 0.998801 + . ID=CGI_10013027; scaffold358 TRF Tandem_Repeat 179973 180042 131 + . . scaffold358 TRF Tandem_Repeat 186347 186430 159 + . . scaffold358 TRF Tandem_Repeat 187560 188308 826 + . . scaffold358 TRF Tandem_Repeat 187560 188308 843 + . . scaffold358 GLEAN mRNA 194553 199506 0.9982 - . ID=CGI_10013028; scaffold358 GLEAN promoter 199507 200506 0.9982 - . ID=CGI_10013028; scaffold358 GLEAN mRNA 202466 206972 1 - . ID=CGI_10013029; scaffold358 GLEAN promoter 206973 207972 1 - . ID=CGI_10013029; scaffold358 WUBlastX LINE_CR1 208411 208776 56 + . . scaffold358 TRF Tandem_Repeat 208428 208457 60 + . . scaffold358 WUBlastX LINE_L2 208474 209499 225 + . . scaffold358 TRF Tandem_Repeat 209730 209767 76 + . . scaffold358 GLEAN promoter 210633 211632 0.996199 + . ID=CGI_10013030; scaffold358 GLEAN mRNA 211633 218686 0.996199 + . ID=CGI_10013030; scaffold358 TRF Tandem_Repeat 227191 227252 88 + . . scaffold358 TRF Tandem_Repeat 231690 231770 117 + . . scaffold358 WUBlastX LINE_CR1 256077 256190 21 + . . scaffold358 WUBlastX LINE_RTE-BovB 257044 257445 45 + . . scaffold358 WUBlastX LINE_RTE-X 257119 258042 380 + . . scaffold358 WUBlastX LINE_RTE-X 257899 258084 27 + . . scaffold358 WUBlastX LINE_RTE-X 258792 259265 33 + . . scaffold358 WUBlastX LINE_RTE-X 258945 259427 88 + . . scaffold358 TRF Tandem_Repeat 281475 281568 188 + . . scaffold358 TRF Tandem_Repeat 282194 282228 70 + . . scaffold358 TRF Tandem_Repeat 283873 284043 173 + . . scaffold358 TRF Tandem_Repeat 283933 284043 168 + . . scaffold358 GLEAN mRNA 284189 302150 0.650922 - . ID=CGI_10013031; scaffold358 TRF Tandem_Repeat 291926 292276 524 + . . scaffold358 GLEAN promoter 302151 303150 0.650922 - . ID=CGI_10013031; scaffold358 GLEAN mRNA 342104 342310 0.866433 - . ID=CGI_10013032; scaffold358 GLEAN promoter 342311 343310 0.866433 - . ID=CGI_10013032; scaffold35806 GLEAN mRNA 2379 2891 0.999372 - . ID=CGI_10001617; scaffold35806 GLEAN promoter 2892 3891 0.999372 - . ID=CGI_10001617; scaffold35806 WUBlastX DNA_IS4EU 21854 22117 31 - . . scaffold35806 WUBlastX DNA_IS4EU 21881 22504 29 - . . scaffold35806 WUBlastX DNA_IS4EU 22116 22403 34 - . . scaffold35806 WUBlastX DNA_Kolobok-IS4 22116 22352 45 - . . scaffold35806 WUBlastX LINE_RTE-BovB 24663 24917 126 + . . scaffold35806 WUBlastX LINE_RTE-BovB 24693 24899 214 + . . scaffold35806 WUBlastX LINE_RTE-BovB 24911 25774 488 + . . scaffold35806 TRF Tandem_Repeat 26137 26176 80 + . . scaffold35806 WUBlastX LINE_L1 26241 26519 49 - . . scaffold35806 WUBlastX LINE_L1-Tx1 26301 26447 67 - . . scaffold35806 WUBlastX LINE_L1-Tx1 26304 26576 41 - . . scaffold35806 WUBlastX LINE_L1-Tx1 26307 26519 66 - . . scaffold35806 WUBlastX LINE_L1-Tx1 27480 27575 29 - . . scaffold35808 GLEAN promoter 2264 3263 0.430124 + . ID=CGI_10001610; scaffold35808 GLEAN mRNA 3264 3494 0.430124 + . ID=CGI_10001610; scaffold35808 TRF Tandem_Repeat 7229 7274 74 + . . scaffold35808 TRF Tandem_Repeat 19865 19935 81 + . . scaffold35808 WUBlastX LTR_Gypsy 22287 23066 118 + . . scaffold35808 WUBlastX LTR_Gypsy 22407 23411 146 + . . scaffold35808 WUBlastX LTR_Gypsy 22443 23294 157 + . . scaffold35808 TRF Tandem_Repeat 25378 25429 104 + . . scaffold35814 GLEAN promoter 1 305 0.990753 + . ID=CGI_10001611; scaffold35814 GLEAN mRNA 306 27672 0.990753 + . ID=CGI_10001611; scaffold35822 GLEAN mRNA 643 14377 1 - . ID=CGI_10001612; scaffold35822 TRF Tandem_Repeat 3264 3371 189 + . . scaffold35822 TRF Tandem_Repeat 11711 11803 78 + . . scaffold35822 GLEAN promoter 14378 15377 1 - . ID=CGI_10001612; scaffold35822 GLEAN mRNA 16325 18835 1 - . ID=CGI_10001613; scaffold35822 GLEAN promoter 18836 19835 1 - . ID=CGI_10001613; scaffold35822 GLEAN mRNA 19065 26700 1 - . ID=CGI_10001614; scaffold35822 TRF Tandem_Repeat 23437 23563 87 + . . scaffold35822 WUBlastX LINE_RTE-BovB 23692 24537 636 + . . scaffold35822 GLEAN promoter 26701 27700 1 - . ID=CGI_10001614; scaffold35836 GLEAN mRNA 11036 21459 0.999993 - . ID=CGI_10001625; scaffold35836 GLEAN promoter 21460 22459 0.999993 - . ID=CGI_10001625; scaffold35836 GLEAN mRNA 22394 27518 0.99999 - . ID=CGI_10001626; scaffold35836 GLEAN promoter 27519 28126 0.99999 - . ID=CGI_10001626; scaffold35854 TRF Tandem_Repeat 1910 2880 1479 + . . scaffold35854 GLEAN mRNA 4133 7718 1 - . ID=CGI_10001636; scaffold35854 TRF Tandem_Repeat 5579 5710 120 + . . scaffold35854 GLEAN promoter 7719 8718 1 - . ID=CGI_10001636; scaffold35854 TRF Tandem_Repeat 12522 12559 67 + . . scaffold35854 TRF Tandem_Repeat 12525 12573 64 + . . scaffold35854 TRF Tandem_Repeat 12768 13718 1102 + . . scaffold35854 TRF Tandem_Repeat 16102 16139 53 + . . scaffold35854 TRF Tandem_Repeat 17073 17159 63 + . . scaffold35854 WUBlastX LINE_L1-Tx1 26159 27433 163 + . . scaffold35854 WUBlastX LINE_L1 26645 27445 306 + . . scaffold35854 WUBlastX LINE_L1-Tx1 27445 28404 615 + . . scaffold35860 WUBlastX LTR_Gypsy 1042 1584 45 + . . scaffold35860 WUBlastX LTR_Gypsy-Cigr 1258 1584 77 + . . scaffold35860 WUBlastX LTR_Gypsy 1596 2075 29 + . . scaffold35860 WUBlastX LTR_Copia 1974 2123 38 + . . scaffold35860 WUBlastX LTR_Gypsy 2195 2314 34 + . . scaffold35860 WUBlastX LINE_L1-Tx1 4878 5228 46 + . . scaffold35860 WUBlastX LINE_L1-Tx1 5288 5584 79 + . . scaffold35860 TRF Tandem_Repeat 5691 5728 76 + . . scaffold35860 TRF Tandem_Repeat 9664 9692 58 + . . scaffold35860 TRF Tandem_Repeat 11574 11610 74 + . . scaffold35860 TRF Tandem_Repeat 12085 12146 117 + . . scaffold35860 WUBlastX LINE_RTE-X 19639 20325 104 - . . scaffold35860 WUBlastX LINE_RTE-X 20258 20623 130 - . . scaffold35860 WUBlastX LINE_RTE-X 20399 20680 38 - . . scaffold35866 TRF Tandem_Repeat 82 492 555 + . . scaffold35866 TRF Tandem_Repeat 2071 2463 502 + . . scaffold35866 TRF Tandem_Repeat 2701 2910 330 + . . scaffold35866 WUBlastX DNA_P 5019 5231 38 + . . scaffold35866 WUBlastX DNA_IS4EU 6026 7243 312 + . . scaffold35866 WUBlastX DNA_IS4EU 6410 7243 364 + . . scaffold35866 WUBlastX DNA_IS4EU 8532 9269 139 - . . scaffold35866 WUBlastX DNA_IS4EU 8547 9173 226 - . . scaffold35866 WUBlastX DNA_IS4EU 8547 9746 109 - . . scaffold35866 WUBlastX DNA_IS4EU 9168 9920 82 - . . scaffold35866 GLEAN promoter 10717 11716 0.998342 + . ID=CGI_10001635; scaffold35866 GLEAN mRNA 11717 17525 0.998342 + . ID=CGI_10001635; scaffold35866 TRF Tandem_Repeat 14192 14447 314 + . . scaffold35866 TRF Tandem_Repeat 15267 15450 300 + . . scaffold35866 TRF Tandem_Repeat 15267 15450 304 + . . scaffold35866 TRF Tandem_Repeat 16400 16601 304 + . . scaffold35866 TRF Tandem_Repeat 16400 16595 293 + . . scaffold35866 TRF Tandem_Repeat 22139 22384 192 + . . scaffold35870 WUBlastX LINE_L1-Tx1 12485 13114 122 - . . scaffold35870 WUBlastX LINE_L1-Tx1 13753 13974 105 - . . scaffold35870 WUBlastX LINE_L1-Tx1 13883 14632 126 - . . scaffold35870 WUBlastX LINE_L1-Tx1 13961 14587 400 - . . scaffold35870 GLEAN promoter 23145 24144 0.776639 + . ID=CGI_10001629; scaffold35870 GLEAN mRNA 24145 24348 0.776639 + . ID=CGI_10001629; scaffold35874 GLEAN mRNA 2719 4257 1 - . ID=CGI_10001637; scaffold35874 GLEAN promoter 4258 5257 1 - . ID=CGI_10001637; scaffold35874 TRF Tandem_Repeat 8173 8438 234 + . . scaffold35874 TRF Tandem_Repeat 16433 16461 58 + . . scaffold35874 WUBlastX DNA_TcMar-Tc1 22238 22675 46 + . . scaffold35874 WUBlastX DNA_TcMar-Tc1 22400 22660 78 + . . scaffold35874 WUBlastX DNA_TcMar-Tc1 22460 22675 91 + . . scaffold35874 WUBlastX DNA_TcMar-Tc1 22687 23106 208 + . . scaffold35874 WUBlastX DNA_TcMar-Tc1 23567 23650 30 + . . scaffold35884 TRF Tandem_Repeat 1 31 53 + . . scaffold35884 WUBlastX LINE_L2 2193 2531 73 - . . scaffold35884 WUBlastX LINE_CR1-L2 2292 2585 34 - . . scaffold35884 TRF Tandem_Repeat 13711 13760 66 + . . scaffold35884 TRF Tandem_Repeat 13714 13759 58 + . . scaffold35884 GLEAN mRNA 14565 28305 0.999993 - . ID=CGI_10001638; scaffold35884 TRF Tandem_Repeat 22005 22039 52 + . . scaffold35884 TRF Tandem_Repeat 22244 22395 93 + . . scaffold35884 TRF Tandem_Repeat 22264 22398 150 + . . scaffold35884 TRF Tandem_Repeat 27007 27850 1283 + . . scaffold35884 GLEAN promoter 28306 28485 0.999993 - . ID=CGI_10001638; scaffold35890 GLEAN mRNA 3962 11558 0.84036 - . ID=CGI_10001639; scaffold35890 GLEAN promoter 11559 12558 0.84036 - . ID=CGI_10001639; scaffold35890 GLEAN promoter 13139 14138 0.915326 + . ID=CGI_10001640; scaffold35890 GLEAN mRNA 14139 24102 0.915326 + . ID=CGI_10001640; scaffold35890 GLEAN promoter 26418 27417 0.99996 + . ID=CGI_10001641; scaffold35890 GLEAN mRNA 27418 28048 0.99996 + . ID=CGI_10001641; scaffold35894 GLEAN mRNA 1317 2291 0.999999 - . ID=CGI_10001655; scaffold35894 GLEAN promoter 2292 3291 0.999999 - . ID=CGI_10001655; scaffold35894 GLEAN mRNA 5265 5525 0.618186 - . ID=CGI_10001656; scaffold35894 GLEAN promoter 5526 6525 0.618186 - . ID=CGI_10001656; scaffold35894 GLEAN mRNA 16597 16974 0.687774 - . ID=CGI_10001657; scaffold35894 GLEAN promoter 16975 17974 0.687774 - . ID=CGI_10001657; scaffold35894 TRF Tandem_Repeat 25564 25594 62 + . . scaffold35894 WUBlastX LINE_L1-Tx1 25730 26188 69 - . . scaffold35894 WUBlastX LINE_L1-Tx1 25802 26149 75 - . . scaffold35894 WUBlastX LINE_L1-Tx1 25934 26170 104 - . . scaffold35894 WUBlastX LINE_L1-Tx1 26199 26645 105 - . . scaffold35896 WUBlastX LTR_DIRS 1 324 159 + . . scaffold35896 GLEAN mRNA 578 26444 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX DNA_TcMar-Tc1 9402 9929 154 + . . scaffold35896 WUBlastX DNA_TcMar-Tc1 9932 10150 94 + . . scaffold35896 WUBlastX DNA_TcMar-Tc1 10072 10335 111 + . . scaffold35896 TRF Tandem_Repeat 15398 15449 61 + . . scaffold35896 TRF Tandem_Repeat 15411 15450 64 + . . scaffold35896 WUBlastX LINE_RTE-BovB 20487 20642 29 - . . scaffold35896 WUBlastX LINE_L2 25839 26030 21 - . . scaffold35896 WUBlastX LINE_L1 26002 26052 24 - . . scaffold35896 GLEAN promoter 26445 27444 0.497805 - . ID=CGI_10001642; scaffold35896 WUBlastX LINE_RTE-X 26476 28569 353 - . . scaffold35898 GLEAN promoter 3019 4018 0.557364 + . ID=CGI_10001646; scaffold35898 GLEAN mRNA 4019 27136 0.557364 + . ID=CGI_10001646; scaffold35900 TRF Tandem_Repeat 870 928 66 + . . scaffold35900 TRF Tandem_Repeat 877 928 68 + . . scaffold35900 TRF Tandem_Repeat 4080 4142 72 + . . scaffold35900 TRF Tandem_Repeat 4243 6960 2474 + . . scaffold35900 TRF Tandem_Repeat 4243 6960 2492 + . . scaffold35900 TRF Tandem_Repeat 11968 13275 1584 + . . scaffold35900 GLEAN promoter 13255 14254 0.776657 + . ID=CGI_10001645; scaffold35900 GLEAN mRNA 14255 15928 0.776657 + . ID=CGI_10001645; scaffold35900 WUBlastX DNA_Harbinger 16650 16964 96 + . . scaffold35900 TRF Tandem_Repeat 21521 21555 70 + . . scaffold35900 TRF Tandem_Repeat 24714 25752 1504 + . . scaffold35902 GLEAN mRNA 1336 12941 0.914048 - . ID=CGI_10001651; scaffold35902 TRF Tandem_Repeat 7974 8032 118 + . . scaffold35902 GLEAN promoter 12942 13941 0.914048 - . ID=CGI_10001651; scaffold35902 TRF Tandem_Repeat 18863 18899 56 + . . scaffold35902 GLEAN mRNA 22250 28263 0.990718 - . ID=CGI_10001652; scaffold35902 WUBlastX LINE_L1 27520 28107 310 + . . scaffold35902 WUBlastX LINE_L1-Tx1 27589 28083 422 + . . scaffold35902 GLEAN promoter 28264 28810 0.990718 - . ID=CGI_10001652; scaffold35902 WUBlastX LTR_Gypsy-Cigr 28474 28809 124 + . . scaffold35902 WUBlastX LTR_Gypsy 28555 28809 164 + . . scaffold35902 WUBlastX LTR_Gypsy 28597 28809 169 + . . scaffold35910 TRF Tandem_Repeat 7067 7213 276 + . . scaffold35910 WUBlastX LINE_Penelope 9187 9375 21 + . . scaffold35910 WUBlastX LINE_Penelope 9392 9700 118 + . . scaffold35910 WUBlastX LINE_Penelope 9693 10190 190 + . . scaffold35910 WUBlastX LINE_Penelope 10198 10446 151 + . . scaffold35910 WUBlastX LINE_Penelope 12675 12986 47 + . . scaffold35910 WUBlastX LINE_Penelope 12992 13147 50 + . . scaffold35910 TRF Tandem_Repeat 14998 15052 110 + . . scaffold35910 WUBlastX DNA_Sola 18256 18552 50 + . . scaffold35910 WUBlastX DNA_Sola 18510 18920 82 + . . scaffold35910 WUBlastX DNA_Sola 18573 18842 191 + . . scaffold35910 WUBlastX DNA_Sola 19020 19223 37 + . . scaffold35910 WUBlastX DNA_Sola 19020 19190 87 + . . scaffold35910 WUBlastX DNA_Sola 19770 19820 22 + . . scaffold35910 WUBlastX DNA_Sola 20156 20674 130 + . . scaffold35910 WUBlastX DNA_Sola 20195 20569 182 + . . scaffold35910 WUBlastX LINE_RTE-BovB 25772 25855 21 + . . scaffold35910 WUBlastX LINE_L1-Tx1 26461 27102 330 + . . scaffold35910 WUBlastX LINE_L1-Tx1 26587 27102 489 + . . scaffold35910 WUBlastX LINE_L1 26614 27189 151 + . . scaffold35910 WUBlastX LINE_L1-Tx1 27195 27803 332 + . . scaffold35910 WUBlastX LINE_L1 27210 27917 184 + . . scaffold35910 WUBlastX LINE_L1-Tx1 27916 28869 169 + . . scaffold35912 GLEAN promoter 1448 2447 0.999062 + . ID=CGI_10001658; scaffold35912 GLEAN mRNA 2448 13613 0.999062 + . ID=CGI_10001658; scaffold35912 GLEAN mRNA 14234 27414 0.999661 - . ID=CGI_10001659; scaffold35912 GLEAN promoter 27415 28414 0.999661 - . ID=CGI_10001659; scaffold35926 WUBlastX LINE_RTE-X 978 1118 56 - . . scaffold35926 WUBlastX LINE_RTE-X 1102 1602 112 - . . scaffold35926 WUBlastX LINE_RTE-X 1108 1530 210 - . . scaffold35926 WUBlastX LINE_RTE-X 1523 1696 67 - . . scaffold35926 WUBlastX LINE_RTE-X 1523 1762 45 - . . scaffold35926 WUBlastX DNA_Sola 1923 2240 108 + . . scaffold35926 GLEAN mRNA 7812 9539 1 - . ID=CGI_10001664; scaffold35926 GLEAN promoter 9540 10539 1 - . ID=CGI_10001664; scaffold35926 TRF Tandem_Repeat 20273 20318 92 + . . scaffold35926 WUBlastX LINE_L1 24245 24508 66 - . . scaffold35926 WUBlastX LINE_L1-Tx1 24332 24553 58 - . . scaffold35926 WUBlastX LINE_L1-Tx1 24531 24620 21 - . . scaffold35926 WUBlastX LINE_L1 24591 24629 23 - . . scaffold35926 TRF Tandem_Repeat 25508 25539 55 + . . scaffold35926 WUBlastX DNA_hAT 26378 26509 35 - . . scaffold35926 WUBlastX DNA_hAT-Ac 27057 28280 394 - . . scaffold35926 WUBlastX DNA_hAT-Ac 27438 28697 31 - . . scaffold35928 GLEAN promoter 1924 2923 1 + . ID=CGI_10001623; scaffold35928 GLEAN mRNA 2924 8106 1 + . ID=CGI_10001623; scaffold35928 TRF Tandem_Repeat 9534 9561 56 + . . scaffold35928 TRF Tandem_Repeat 12002 12105 187 + . . scaffold35928 TRF Tandem_Repeat 12110 12175 87 + . . scaffold35928 WUBlastX LTR_Ngaro 19684 20046 64 - . . scaffold35928 WUBlastX LTR_Ngaro 19747 20043 98 - . . scaffold35928 WUBlastX LTR_Ngaro 19792 20046 139 - . . scaffold35928 WUBlastX LTR_Ngaro 19846 20046 145 - . . scaffold35928 WUBlastX LTR_Ngaro 20045 20242 24 - . . scaffold35928 TRF Tandem_Repeat 20697 20790 152 + . . scaffold35928 TRF Tandem_Repeat 25236 26221 1355 + . . scaffold35936 GLEAN promoter 11202 12201 0.993856 + . ID=CGI_10001667; scaffold35936 GLEAN mRNA 12202 18297 0.993856 + . ID=CGI_10001667; scaffold35946 GLEAN mRNA 4620 7241 0.650901 - . ID=CGI_10001670; scaffold35946 GLEAN promoter 7242 8241 0.650901 - . ID=CGI_10001670; scaffold35946 GLEAN promoter 7541 8540 0.997491 + . ID=CGI_10001671; scaffold35946 GLEAN mRNA 8541 13794 0.997491 + . ID=CGI_10001671; scaffold35946 GLEAN mRNA 12763 14532 0.771668 - . ID=CGI_10001672; scaffold35946 GLEAN promoter 14533 15532 0.771668 - . ID=CGI_10001672; scaffold35946 GLEAN promoter 18529 19528 0.998755 + . ID=CGI_10001673; scaffold35946 GLEAN mRNA 19529 25620 0.998755 + . ID=CGI_10001673; scaffold35950 WUBlastX DNA_TcMar-Tc1 27821 28087 32 + . . scaffold35950 WUBlastX DNA_TcMar-Tc1 27902 28087 61 + . . scaffold35950 WUBlastX DNA_TcMar-Tc1 27959 28087 66 + . . scaffold35950 WUBlastX DNA_TcMar-Tc1 28124 28348 26 + . . scaffold35956 WUBlastX DNA_Sola 504 776 57 - . . scaffold35956 WUBlastX DNA_Sola 960 1070 53 - . . scaffold35956 WUBlastX DNA_Sola 1628 1780 46 - . . scaffold35956 WUBlastX DNA_Sola 2146 2244 35 - . . scaffold35956 TRF Tandem_Repeat 2786 2856 70 + . . scaffold35956 TRF Tandem_Repeat 6888 6934 94 + . . scaffold35956 TRF Tandem_Repeat 7894 7942 98 + . . scaffold35956 TRF Tandem_Repeat 9367 9401 52 + . . scaffold35956 TRF Tandem_Repeat 9376 9427 59 + . . scaffold35956 TRF Tandem_Repeat 16907 16970 128 + . . scaffold35956 TRF Tandem_Repeat 20364 20427 119 + . . scaffold35956 TRF Tandem_Repeat 20449 20476 56 + . . scaffold35956 TRF Tandem_Repeat 22386 22447 124 + . . scaffold35956 TRF Tandem_Repeat 22485 22543 55 + . . scaffold35960 GLEAN mRNA 415 14469 0.999984 - . ID=CGI_10001702; scaffold35960 TRF Tandem_Repeat 7779 8213 288 + . . scaffold35960 TRF Tandem_Repeat 8214 8496 186 + . . scaffold35960 WUBlastX DNA_hAT-Tip100 9519 9713 86 + . . scaffold35960 WUBlastX DNA_hAT-Tip100 11204 11455 35 + . . scaffold35960 WUBlastX DNA_hAT-Tip100 11219 11398 83 + . . scaffold35960 GLEAN promoter 14470 15469 0.999984 - . ID=CGI_10001702; scaffold35960 TRF Tandem_Repeat 15904 16009 184 + . . scaffold35960 TRF Tandem_Repeat 15904 16009 187 + . . scaffold35960 WUBlastX LINE_L1 19646 20380 235 - . . scaffold35960 WUBlastX LINE_L1-Tx1 19703 20311 305 - . . scaffold35960 WUBlastX LINE_L1-Tx1 24449 24613 84 - . . scaffold35960 WUBlastX LINE_L1-Tx1 24455 24652 63 - . . scaffold35966 TRF Tandem_Repeat 4020 4067 96 + . . scaffold35966 TRF Tandem_Repeat 7252 7362 91 + . . scaffold35966 TRF Tandem_Repeat 7784 8305 507 + . . scaffold35966 TRF Tandem_Repeat 9969 10012 88 + . . scaffold35966 TRF Tandem_Repeat 11026 11418 230 + . . scaffold35966 TRF Tandem_Repeat 11026 11418 345 + . . scaffold35966 WUBlastX LINE_L1 23160 23369 29 + . . scaffold35966 WUBlastX LINE_L1-Tx1 23229 23366 59 + . . scaffold35966 WUBlastX LINE_L1-Tx1 23386 23733 144 + . . scaffold35966 WUBlastX LINE_L1-Tx1 23697 23939 66 + . . scaffold35966 WUBlastX LINE_L1-Tx1 23975 24115 52 + . . scaffold35966 WUBlastX LINE_L1-Tx1 23999 24115 57 + . . scaffold35966 WUBlastX LINE_L1-Tx1 24112 24897 83 + . . scaffold35966 WUBlastX LINE_L1-Tx1 24250 24903 192 + . . scaffold35966 WUBlastX LINE_L1 24385 25047 176 + . . scaffold35966 WUBlastX LINE_L1-Tx1 24905 25609 141 + . . scaffold35966 WUBlastX LINE_L1-Tx1 25656 25745 22 + . . scaffold35966 WUBlastX LINE_L1-Tx1 25723 26187 34 + . . scaffold35966 WUBlastX LINE_L1 26184 26267 27 + . . scaffold35966 WUBlastX LINE_L1 26202 26267 27 + . . scaffold35970 GLEAN promoter 12282 13281 1 + . ID=CGI_10001699; scaffold35970 GLEAN mRNA 13282 18900 1 + . ID=CGI_10001699; scaffold35970 TRF Tandem_Repeat 14901 14930 60 + . . scaffold35970 TRF Tandem_Repeat 16428 16480 106 + . . scaffold35970 TRF Tandem_Repeat 21102 21138 74 + . . scaffold35970 WUBlastX LTR_Gypsy 26700 26768 30 + . . scaffold35970 WUBlastX LTR_Gypsy 27170 27325 43 - . . scaffold35970 WUBlastX LTR_Gypsy 27212 27952 323 + . . scaffold35970 WUBlastX LTR_Gypsy 27353 27967 463 + . . scaffold35970 WUBlastX LTR_Gypsy 27972 29537 1112 - . . scaffold35974 TRF Tandem_Repeat 12262 12299 76 + . . scaffold35974 WUBlastX RC_Helitron 12348 13838 301 + . . scaffold35974 WUBlastX DNA_Helitron 12861 14105 200 + . . scaffold35974 TRF Tandem_Repeat 14109 14350 360 + . . scaffold35974 WUBlastX RC_Helitron 14358 15221 541 + . . scaffold35974 WUBlastX RC_Helitron 14604 19673 3552 + . . scaffold35974 WUBlastX LINE_L2 19029 19979 21 + . . scaffold35974 TRF Tandem_Repeat 25708 25740 66 + . . scaffold35974 GLEAN mRNA 27071 29417 0.530503 - . ID=CGI_10001705; scaffold35974 TRF Tandem_Repeat 29218 29342 114 + . . scaffold35974 TRF Tandem_Repeat 29222 29340 69 + . . scaffold35974 GLEAN promoter 29418 29619 0.530503 - . ID=CGI_10001705; scaffold35982 GLEAN mRNA 5428 9163 0.764801 - . ID=CGI_10001711; scaffold35982 GLEAN promoter 9164 10163 0.764801 - . ID=CGI_10001711; scaffold35982 GLEAN mRNA 14310 29218 0.99863 - . ID=CGI_10001712; scaffold35982 GLEAN promoter 29219 29751 0.99863 - . ID=CGI_10001712; scaffold35986 GLEAN promoter 6135 7134 0.651135 + . ID=CGI_10001706; scaffold35986 GLEAN mRNA 7135 18106 0.651135 + . ID=CGI_10001706; scaffold35986 TRF Tandem_Repeat 12602 12833 136 + . . scaffold35986 WUBlastX LTR_Gypsy 12984 13121 95 + . . scaffold35986 WUBlastX LTR_DIRS 13122 13367 141 - . . scaffold35986 WUBlastX LTR_DIRS 13328 13573 68 - . . scaffold35986 WUBlastX LTR_DIRS 13627 13716 31 - . . scaffold35986 WUBlastX LTR_DIRS 14383 14598 42 - . . scaffold35986 WUBlastX LTR_DIRS 14583 15041 104 - . . scaffold35986 WUBlastX LTR_DIRS 14598 15137 24 - . . scaffold35986 WUBlastX LTR_DIRS 15978 16415 57 - . . scaffold35986 GLEAN promoter 20894 21893 1 + . ID=CGI_10001707; scaffold35986 TRF Tandem_Repeat 21028 21089 88 + . . scaffold35986 GLEAN mRNA 21894 25008 1 + . ID=CGI_10001707; scaffold35986 GLEAN promoter 25720 26719 1 + . ID=CGI_10001708; scaffold35986 GLEAN mRNA 26720 29401 1 + . ID=CGI_10001708; scaffold35986 TRF Tandem_Repeat 29584 29687 84 + . . scaffold35986 TRF Tandem_Repeat 29586 29686 66 + . . scaffold35988 WUBlastX DNA_Kolobok 1550 1660 22 + . . scaffold35988 WUBlastX DNA_Kolobok 1896 2057 27 + . . scaffold35988 WUBlastX DNA_Kolobok 1929 2060 49 + . . scaffold35988 TRF Tandem_Repeat 3741 3881 93 + . . scaffold35988 WUBlastX DNA_Maverick 4042 4428 41 - . . scaffold35988 WUBlastX DNA_Maverick 4150 4425 101 - . . scaffold35988 WUBlastX DNA_Maverick 4356 4565 99 - . . scaffold35988 WUBlastX DNA_Maverick 4431 4589 70 - . . scaffold35988 TRF Tandem_Repeat 8865 8891 54 + . . scaffold35988 WUBlastX DNA_Maverick 10389 10946 180 + . . scaffold35988 WUBlastX DNA_Maverick 10950 11021 21 + . . scaffold35988 WUBlastX DNA_Maverick 10962 11033 26 + . . scaffold35988 WUBlastX DNA_Maverick 10962 11021 28 + . . scaffold35988 WUBlastX DNA_Maverick 11059 11256 51 + . . scaffold35988 WUBlastX DNA_Maverick 11065 11211 66 + . . scaffold35988 WUBlastX DNA_Crypton 14291 14641 75 - . . scaffold35988 TRF Tandem_Repeat 15638 15681 88 + . . scaffold35988 WUBlastX DNA_Crypton 15747 16361 150 - . . scaffold35988 WUBlastX DNA_PiggyBac 23353 23862 96 - . . scaffold35988 WUBlastX DNA_PiggyBac 23916 24086 56 - . . scaffold35988 WUBlastX DNA_PiggyBac 23946 24113 79 - . . scaffold35988 WUBlastX DNA_PiggyBac 24897 25034 41 - . . scaffold35988 GLEAN mRNA 25841 29038 0.999996 - . ID=CGI_10001701; scaffold35988 WUBlastX DNA_Maverick 26179 26325 66 - . . scaffold35988 GLEAN promoter 29039 29584 0.999996 - . ID=CGI_10001701; scaffold35994 GLEAN promoter 476 1475 0.650997 + . ID=CGI_10001674; scaffold35994 GLEAN mRNA 1476 13595 0.650997 + . ID=CGI_10001674; scaffold35994 WUBlastX DNA_Maverick 3543 3797 20 - . . scaffold35994 WUBlastX DNA_Maverick 3803 4312 26 - . . scaffold35994 WUBlastX LINE_Penelope 9739 10764 116 + . . scaffold35994 WUBlastX LINE_Penelope 9943 10767 326 + . . scaffold35994 WUBlastX LINE_Penelope 10754 11227 224 + . . scaffold35994 WUBlastX LINE_Penelope 11220 11702 144 + . . scaffold35994 WUBlastX LINE_Penelope 11250 11513 158 + . . scaffold35994 WUBlastX DNA_PiggyBac 11907 12422 128 - . . scaffold35994 WUBlastX DNA_PiggyBac 12413 12562 42 - . . scaffold35994 WUBlastX DNA_PiggyBac 12478 12960 150 - . . scaffold35994 WUBlastX DNA_PiggyBac 12559 12915 248 - . . scaffold35994 WUBlastX RC_Helitron 17073 17645 75 - . . scaffold35994 WUBlastX DNA_PiggyBac 18440 18526 23 - . . scaffold35994 WUBlastX DNA_PiggyBac 18483 18677 55 - . . scaffold35994 WUBlastX DNA_PiggyBac 18525 18866 170 - . . scaffold35994 WUBlastX DNA_PiggyBac 18911 19201 115 - . . scaffold35994 WUBlastX DNA_PiggyBac 18917 19138 138 - . . scaffold35994 WUBlastX DNA_PiggyBac 19147 19311 79 - . . scaffold35994 TRF Tandem_Repeat 20325 20464 271 + . . scaffold35994 GLEAN promoter 20382 21381 0.722015 + . ID=CGI_10001675; scaffold35994 GLEAN mRNA 21382 24601 0.722015 + . ID=CGI_10001675; scaffold35994 WUBlastX LTR_Pao 22897 23361 140 - . . scaffold35994 WUBlastX LTR_Gypsy 23659 23940 122 + . . scaffold35994 WUBlastX LTR_Gypsy 23927 24322 192 + . . scaffold35994 WUBlastX LTR_Gypsy 23930 24220 197 + . . scaffold35994 WUBlastX LTR_Gypsy 25936 26127 20 + . . scaffold35994 WUBlastX LTR_Gypsy 26526 26702 121 + . . scaffold35994 WUBlastX LTR_Gypsy 26538 26768 71 + . . scaffold35994 WUBlastX LTR_Gypsy 26541 26885 52 + . . scaffold35994 WUBlastX LTR_Gypsy 26821 26952 31 + . . scaffold35994 WUBlastX LTR_Gypsy 26830 27024 24 + . . scaffold35994 WUBlastX LTR_DIRS 28214 29167 460 - . . scaffold36 GLEAN promoter 1519 2518 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 1709 2458 36 + . . scaffold36 WUBlastX LTR_ERV1 2159 2527 59 + . . scaffold36 GLEAN mRNA 2519 8438 0.614104 + . ID=CGI_10001028; scaffold36 WUBlastX LTR_Gypsy 2870 3133 42 + . . scaffold36 WUBlastX LTR_Gypsy 2924 3160 49 + . . scaffold36 WUBlastX LTR_Gypsy 2969 3130 61 + . . scaffold36 WUBlastX LTR_Gypsy 2996 5128 1016 + . . scaffold36 WUBlastX LTR_Gypsy 3719 5191 1108 + . . scaffold36 WUBlastX LTR_Gypsy 3743 6757 796 + . . scaffold36 WUBlastX LTR_Gypsy 5546 6976 408 + . . scaffold36 WUBlastX DNA_NOF 7095 7286 47 + . . scaffold36 WUBlastX LTR_Pao 7161 7292 50 + . . scaffold36 TRF Tandem_Repeat 12166 12193 56 + . . scaffold36 TRF Tandem_Repeat 12776 12819 79 + . . scaffold36002 TRF Tandem_Repeat 3134 3215 114 + . . scaffold36002 WUBlastX DNA_IS4EU 3239 4003 97 - . . scaffold36002 WUBlastX LINE_Penelope 14382 14540 24 - . . scaffold36002 WUBlastX LINE_Penelope 14593 14742 22 - . . scaffold36002 WUBlastX LINE_Penelope 14608 14718 37 - . . scaffold36002 WUBlastX LINE_Penelope 15278 15505 50 - . . scaffold36002 WUBlastX LTR_DIRS 16604 16927 158 + . . scaffold36002 WUBlastX LTR_DIRS 16933 17025 20 + . . scaffold36002 WUBlastX LTR_DIRS 16980 17615 231 + . . scaffold36002 WUBlastX LTR_DIRS 17618 17848 211 + . . scaffold36002 WUBlastX LTR_DIRS 17851 18447 195 + . . scaffold36002 WUBlastX LTR_DIRS 18468 19232 372 + . . scaffold36002 WUBlastX LTR_DIRS 19454 20119 512 + . . scaffold36002 TRF Tandem_Repeat 28883 28919 58 + . . scaffold36002 TRF Tandem_Repeat 29495 29524 60 + . . scaffold36006 GLEAN promoter 21 1020 1 + . ID=CGI_10001720; scaffold36006 GLEAN mRNA 1021 7353 1 + . ID=CGI_10001720; scaffold36006 GLEAN mRNA 1062 28962 0.233791 - . ID=CGI_10001721; scaffold36006 GLEAN promoter 28963 29835 0.233791 - . ID=CGI_10001721; scaffold36020 TRF Tandem_Repeat 4929 4971 59 + . . scaffold36020 TRF Tandem_Repeat 6023 6081 109 + . . scaffold36020 TRF Tandem_Repeat 11438 11489 104 + . . scaffold36020 TRF Tandem_Repeat 11582 11614 57 + . . scaffold36020 TRF Tandem_Repeat 18122 18192 142 + . . scaffold36020 GLEAN mRNA 20093 20902 0.986288 - . ID=CGI_10001738; scaffold36020 GLEAN promoter 20903 21902 0.986288 - . ID=CGI_10001738; scaffold36020 WUBlastX LTR_Gypsy-Cigr 21601 21825 54 - . . scaffold36020 WUBlastX LTR_Gypsy 21622 21804 81 - . . scaffold36020 TRF Tandem_Repeat 26909 26953 54 + . . scaffold36020 WUBlastX LINE_RTE-X 29753 29980 87 + . . scaffold36022 TRF Tandem_Repeat 2975 3003 58 + . . scaffold36022 WUBlastX LINE_RTE-BovB 3815 4720 1043 - . . scaffold36022 WUBlastX LINE_RTE-BovB 4723 5082 365 - . . scaffold36022 WUBlastX LINE_RTE-BovB 5025 6128 1239 - . . scaffold36022 WUBlastX LINE_R2 6611 6700 22 - . . scaffold36022 WUBlastX LINE_RTE-BovB 6898 7140 270 - . . scaffold36022 GLEAN mRNA 8319 9974 0.999661 - . ID=CGI_10001740; scaffold36022 WUBlastX LINE_L2 8979 9419 61 - . . scaffold36022 GLEAN promoter 9975 10974 0.999661 - . ID=CGI_10001740; scaffold36022 TRF Tandem_Repeat 10579 10888 286 + . . scaffold36022 WUBlastX LINE_RTE-X 15941 16483 94 - . . scaffold36022 WUBlastX LINE_RTE-X 16043 16444 146 - . . scaffold36022 WUBlastX LINE_RTE-X 18163 19041 288 - . . scaffold36022 WUBlastX LINE_RTE-X 19059 19370 183 - . . scaffold36022 WUBlastX LINE_L2 19956 20060 20 - . . scaffold36022 GLEAN mRNA 22203 29122 0.99999 - . ID=CGI_10001741; scaffold36022 WUBlastX LINE_RTE-X 24492 24632 58 + . . scaffold36022 GLEAN promoter 29123 30061 0.99999 - . ID=CGI_10001741; scaffold36022 WUBlastX LINE_RTE-X 29354 29884 95 + . . scaffold36022 WUBlastX LINE_L2 29877 30059 60 + . . scaffold36026 GLEAN mRNA 826 1488 0.613967 - . ID=CGI_10001742; scaffold36026 GLEAN promoter 1489 2488 0.613967 - . ID=CGI_10001742; scaffold36026 TRF Tandem_Repeat 26463 26518 76 + . . scaffold36026 WUBlastX DNA_NOF 27600 27767 33 + . . scaffold36026 WUBlastX DNA_NOF 27871 28224 254 + . . scaffold36034 TRF Tandem_Repeat 2231 2300 140 + . . scaffold36034 WUBlastX LINE_Penelope 6650 6778 47 + . . scaffold36034 WUBlastX LINE_Penelope 6695 6775 48 + . . scaffold36034 WUBlastX LINE_Penelope 6766 6966 39 + . . scaffold36034 WUBlastX LINE_Penelope 6972 7355 207 + . . scaffold36034 WUBlastX LINE_Penelope 7268 8017 207 + . . scaffold36034 WUBlastX LINE_Penelope 8360 8746 81 - . . scaffold36034 WUBlastX LINE_Penelope 8495 8764 91 - . . scaffold36034 WUBlastX LINE_Penelope 8776 9147 44 - . . scaffold36034 WUBlastX LINE_Penelope 9009 9509 50 - . . scaffold36034 WUBlastX LINE_Penelope 9123 9506 123 - . . scaffold36034 WUBlastX LINE_Penelope 9129 9404 159 - . . scaffold36034 WUBlastX LINE_L1-Tx1 11815 13533 1078 - . . scaffold36034 WUBlastX LINE_L2 13890 14552 117 - . . scaffold36034 WUBlastX LINE_L1 14079 14681 42 - . . scaffold36034 WUBlastX LTR_Copia 16524 17969 870 - . . scaffold36034 WUBlastX LTR_Copia 16527 18395 821 - . . scaffold36034 WUBlastX LTR_Copia 18396 20765 1475 - . . scaffold36034 WUBlastX LTR_Lenti 20640 20792 27 - . . scaffold36034 GLEAN mRNA 27094 29917 0.999929 - . ID=CGI_10001745; scaffold36034 GLEAN promoter 29918 30196 0.999929 - . ID=CGI_10001745; scaffold36036 GLEAN mRNA 7381 15388 0.644886 - . ID=CGI_10001747; scaffold36036 GLEAN promoter 15389 16388 0.644886 - . ID=CGI_10001747; scaffold36036 GLEAN mRNA 22254 28996 0.999676 - . ID=CGI_10001748; scaffold36036 GLEAN promoter 28997 29996 0.999676 - . ID=CGI_10001748; scaffold36070 WUBlastX LINE_RTE-BovB 11360 11731 86 + . . scaffold36070 TRF Tandem_Repeat 13232 13305 53 + . . scaffold36070 WUBlastX DNA_Harbinger 14046 14204 63 + . . scaffold36092 TRF Tandem_Repeat 2336 2375 80 + . . scaffold36092 GLEAN promoter 2730 3729 0.999861 + . ID=CGI_10001746; scaffold36092 GLEAN mRNA 3730 16725 0.999861 + . ID=CGI_10001746; scaffold36092 TRF Tandem_Repeat 4151 4191 82 + . . scaffold36092 TRF Tandem_Repeat 13104 13570 544 + . . scaffold36092 WUBlastX DNA_Harbinger 19472 19717 66 - . . scaffold36092 WUBlastX LTR_Gypsy 20012 21046 85 - . . scaffold36092 TRF Tandem_Repeat 28946 30216 2120 + . . scaffold36094 GLEAN mRNA 850 27457 0.614932 - . ID=CGI_10001789; scaffold36094 GLEAN promoter 27458 28457 0.614932 - . ID=CGI_10001789; scaffold361 GLEAN mRNA 1610 13517 1 - . ID=CGI_10020841; scaffold361 GLEAN promoter 13518 14517 1 - . ID=CGI_10020841; scaffold361 GLEAN mRNA 14040 17942 1 - . ID=CGI_10020842; scaffold361 TRF Tandem_Repeat 16328 16354 54 + . . scaffold361 GLEAN promoter 17943 18942 1 - . ID=CGI_10020842; scaffold361 TRF Tandem_Repeat 20741 20770 51 + . . scaffold361 TRF Tandem_Repeat 20768 20814 76 + . . scaffold361 TRF Tandem_Repeat 20813 20891 158 + . . scaffold361 WUBlastX LINE_L2 49078 49407 28 - . . scaffold361 WUBlastX LINE_CR1-L2 49211 49774 59 - . . scaffold361 WUBlastX LINE_CR1-L2 49442 49747 87 - . . scaffold361 GLEAN promoter 50717 51716 0.927789 + . ID=CGI_10020843; scaffold361 GLEAN mRNA 51717 55213 0.927789 + . ID=CGI_10020843; scaffold361 TRF Tandem_Repeat 79839 79880 84 + . . scaffold361 TRF Tandem_Repeat 81131 81182 54 + . . scaffold361 TRF Tandem_Repeat 82438 82466 58 + . . scaffold361 TRF Tandem_Repeat 86030 86071 75 + . . scaffold361 TRF Tandem_Repeat 86918 86942 50 + . . scaffold361 TRF Tandem_Repeat 86981 87008 56 + . . scaffold361 GLEAN mRNA 87387 89615 0.999997 - . ID=CGI_10020844; scaffold361 GLEAN promoter 89616 90615 0.999997 - . ID=CGI_10020844; scaffold361 TRF Tandem_Repeat 90455 90687 367 + . . scaffold361 TRF Tandem_Repeat 96025 96088 128 + . . scaffold361 WUBlastX LTR_Gypsy 103248 103394 26 - . . scaffold361 WUBlastX LTR_Gypsy 103275 104144 193 - . . scaffold361 WUBlastX LTR_Gypsy 104129 104347 183 - . . scaffold361 TRF Tandem_Repeat 106785 106838 108 + . . scaffold361 GLEAN mRNA 110283 139639 0.541902 - . ID=CGI_10020845; scaffold361 TRF Tandem_Repeat 113284 113328 90 + . . scaffold361 TRF Tandem_Repeat 128699 128724 52 + . . scaffold361 GLEAN promoter 139640 140639 0.541902 - . ID=CGI_10020845; scaffold361 GLEAN mRNA 159523 162878 0.998439 - . ID=CGI_10020846; scaffold361 WUBlastX LINE_L1-Tx1 162212 162403 45 + . . scaffold361 GLEAN promoter 162879 163878 0.998439 - . ID=CGI_10020846; scaffold361 GLEAN promoter 165569 166568 0.80745 + . ID=CGI_10020847; scaffold361 GLEAN mRNA 166569 193186 0.80745 + . ID=CGI_10020847; scaffold361 TRF Tandem_Repeat 167631 167872 213 + . . scaffold361 TRF Tandem_Repeat 168098 168254 107 + . . scaffold361 TRF Tandem_Repeat 172119 172836 900 + . . scaffold361 TRF Tandem_Repeat 172119 172907 519 + . . scaffold361 TRF Tandem_Repeat 174391 174974 719 + . . scaffold361 TRF Tandem_Repeat 177225 177378 227 + . . scaffold361 TRF Tandem_Repeat 178867 179104 377 + . . scaffold361 TRF Tandem_Repeat 179421 180769 2078 + . . scaffold361 TRF Tandem_Repeat 183523 183764 358 + . . scaffold361 GLEAN mRNA 194083 224351 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 195056 195967 667 + . . scaffold361 TRF Tandem_Repeat 195056 195970 572 + . . scaffold361 GLEAN promoter 195429 196428 0.848758 + . ID=CGI_10020849; scaffold361 GLEAN mRNA 196429 203338 0.848758 + . ID=CGI_10020849; scaffold361 TRF Tandem_Repeat 197547 197591 90 + . . scaffold361 TRF Tandem_Repeat 200634 200825 278 + . . scaffold361 GLEAN promoter 205142 206141 0.999676 + . ID=CGI_10020850; scaffold361 GLEAN mRNA 206142 208712 0.999676 + . ID=CGI_10020850; scaffold361 TRF Tandem_Repeat 207975 208312 595 + . . scaffold361 TRF Tandem_Repeat 215691 215741 102 + . . scaffold361 TRF Tandem_Repeat 220216 220263 87 + . . scaffold361 TRF Tandem_Repeat 221877 222106 140 + . . scaffold361 GLEAN promoter 224352 225351 0.455906 - . ID=CGI_10020848; scaffold361 TRF Tandem_Repeat 226415 227156 410 + . . scaffold361 TRF Tandem_Repeat 226437 227148 349 + . . scaffold361 TRF Tandem_Repeat 226632 227149 620 + . . scaffold361 WUBlastX LINE_RTE-X 234076 234897 300 - . . scaffold361 GLEAN promoter 235162 236161 0.99994 + . ID=CGI_10020851; scaffold361 GLEAN mRNA 236162 239250 0.99994 + . ID=CGI_10020851; scaffold361 TRF Tandem_Repeat 239913 239955 72 + . . scaffold361 GLEAN mRNA 240255 246702 0.85988 - . ID=CGI_10020852; scaffold361 TRF Tandem_Repeat 240999 241129 69 + . . scaffold361 TRF Tandem_Repeat 243577 243775 308 + . . scaffold361 TRF Tandem_Repeat 245057 245519 784 + . . scaffold361 GLEAN promoter 246703 247702 0.85988 - . ID=CGI_10020852; scaffold361 GLEAN promoter 246999 247998 1 + . ID=CGI_10020853; scaffold361 GLEAN mRNA 247999 258312 1 + . ID=CGI_10020853; scaffold361 TRF Tandem_Repeat 251692 252027 405 + . . scaffold361 TRF Tandem_Repeat 251752 252937 1602 + . . scaffold361 TRF Tandem_Repeat 259129 259808 931 + . . scaffold361 TRF Tandem_Repeat 259162 259837 456 + . . scaffold361 TRF Tandem_Repeat 259162 259808 1025 + . . scaffold361 TRF Tandem_Repeat 259162 259808 913 + . . scaffold361 TRF Tandem_Repeat 262016 262170 103 + . . scaffold361 TRF Tandem_Repeat 262414 262556 178 + . . scaffold361 TRF Tandem_Repeat 262425 262580 75 + . . scaffold361 TRF Tandem_Repeat 262584 262794 151 + . . scaffold361 TRF Tandem_Repeat 263880 263937 116 + . . scaffold361 GLEAN mRNA 265241 269115 0.653573 - . ID=CGI_10020854; scaffold361 GLEAN promoter 269116 270115 0.653573 - . ID=CGI_10020854; scaffold361 TRF Tandem_Repeat 273267 273928 1207 + . . scaffold361 TRF Tandem_Repeat 275866 275928 126 + . . scaffold361 GLEAN mRNA 284186 287900 1 - . ID=CGI_10020855; scaffold361 GLEAN promoter 287901 288900 1 - . ID=CGI_10020855; scaffold361 TRF Tandem_Repeat 290494 290542 98 + . . scaffold361 TRF Tandem_Repeat 291492 292282 1228 + . . scaffold361 GLEAN promoter 292364 293363 0.400231 + . ID=CGI_10020856; scaffold361 TRF Tandem_Repeat 292497 292537 64 + . . scaffold361 TRF Tandem_Repeat 292618 292657 80 + . . scaffold361 GLEAN mRNA 293364 298883 0.400231 + . ID=CGI_10020856; scaffold361 TRF Tandem_Repeat 294993 295043 102 + . . scaffold361 TRF Tandem_Repeat 296484 296954 557 + . . scaffold361 TRF Tandem_Repeat 299712 300139 545 + . . scaffold361 GLEAN mRNA 302353 313236 0.434065 - . ID=CGI_10020857; scaffold361 TRF Tandem_Repeat 308420 308534 115 + . . scaffold361 TRF Tandem_Repeat 311555 311833 438 + . . scaffold361 GLEAN promoter 313237 314236 0.434065 - . ID=CGI_10020857; scaffold361 GLEAN promoter 320089 321088 1 + . ID=CGI_10020858; scaffold361 GLEAN mRNA 321089 327047 1 + . ID=CGI_10020858; scaffold361 TRF Tandem_Repeat 323101 323147 87 + . . scaffold361 GLEAN mRNA 323806 333137 0.80562 - . ID=CGI_10020859; scaffold361 TRF Tandem_Repeat 325059 325532 772 + . . scaffold361 GLEAN promoter 333138 334137 0.80562 - . ID=CGI_10020859; scaffold361 GLEAN mRNA 333222 389747 0.874383 - . ID=CGI_10020861; scaffold361 TRF Tandem_Repeat 333925 334642 1182 + . . scaffold361 TRF Tandem_Repeat 337116 337446 581 + . . scaffold361 TRF Tandem_Repeat 340738 341005 410 + . . scaffold361 TRF Tandem_Repeat 342183 342925 721 + . . scaffold361 WUBlastX LINE_Penelope 343427 343792 143 - . . scaffold361 TRF Tandem_Repeat 345726 346522 1427 + . . scaffold361 TRF Tandem_Repeat 350690 350745 58 + . . scaffold361 TRF Tandem_Repeat 350693 350745 63 + . . scaffold361 TRF Tandem_Repeat 387816 388655 1123 + . . scaffold361 GLEAN promoter 389748 390747 0.874383 - . ID=CGI_10020861; scaffold361 GLEAN promoter 397271 398270 0.697211 + . ID=CGI_10020862; scaffold361 GLEAN mRNA 398271 404648 0.697211 + . ID=CGI_10020862; scaffold361 TRF Tandem_Repeat 418028 418169 73 + . . scaffold361 TRF Tandem_Repeat 423310 423353 88 + . . scaffold361 TRF Tandem_Repeat 431161 431218 89 + . . scaffold361 WUBlastX LINE_CR1-L2 440188 440349 20 - . . scaffold361 WUBlastX LINE_CR1-L2 440451 441050 203 - . . scaffold361 WUBlastX LINE_CR1-L2 441101 441346 115 - . . scaffold361 WUBlastX LINE_CR1 441107 441760 68 - . . scaffold361 WUBlastX LINE_L2 441480 441848 41 - . . scaffold361 WUBlastX LINE_L2 441856 441999 23 - . . scaffold361 WUBlastX LINE_RTE-X 442102 442641 49 + . . scaffold361 WUBlastX LINE_RTE-BovB 442420 442659 56 + . . scaffold361 GLEAN promoter 447345 448344 0.862936 + . ID=CGI_10020863; scaffold361 GLEAN mRNA 448345 469911 0.862936 + . ID=CGI_10020863; scaffold361 GLEAN mRNA 458414 466677 0.398237 - . ID=CGI_10020864; scaffold361 GLEAN promoter 466678 467677 0.398237 - . ID=CGI_10020864; scaffold361 GLEAN mRNA 473371 478097 0.506611 - . ID=CGI_10020865; scaffold361 GLEAN promoter 478098 479097 0.506611 - . ID=CGI_10020865; scaffold361 GLEAN mRNA 481185 495789 0.999648 - . ID=CGI_10020866; scaffold361 GLEAN promoter 495790 496789 0.999648 - . ID=CGI_10020866; scaffold361 WUBlastX LINE_L1-Tx1 501814 502401 122 - . . scaffold361 WUBlastX DNA_Maverick 502406 502636 126 - . . scaffold361 GLEAN promoter 513460 514459 1 + . ID=CGI_10020867; scaffold361 GLEAN mRNA 514460 524413 1 + . ID=CGI_10020867; scaffold361 TRF Tandem_Repeat 522785 522911 67 + . . scaffold361 GLEAN mRNA 528503 530212 1 - . ID=CGI_10020868; scaffold361 GLEAN promoter 530213 531212 1 - . ID=CGI_10020868; scaffold361 GLEAN mRNA 530633 535975 0.999949 - . ID=CGI_10020869; scaffold361 TRF Tandem_Repeat 535763 535817 101 + . . scaffold361 GLEAN promoter 535976 536975 0.999949 - . ID=CGI_10020869; scaffold361 WUBlastX LTR_Gypsy-Cigr 549202 549534 82 - . . scaffold361 WUBlastX LTR_Gypsy 549223 549429 91 - . . scaffold361 GLEAN promoter 555806 556805 0.999234 + . ID=CGI_10020870; scaffold361 GLEAN mRNA 556806 595226 0.999234 + . ID=CGI_10020870; scaffold361 TRF Tandem_Repeat 560490 560536 85 + . . scaffold361 TRF Tandem_Repeat 567153 567252 200 + . . scaffold361 TRF Tandem_Repeat 590025 590111 95 + . . scaffold361 TRF Tandem_Repeat 591228 591284 98 + . . scaffold361 TRF Tandem_Repeat 592810 592842 66 + . . scaffold361 GLEAN promoter 594417 595416 1 + . ID=CGI_10020871; scaffold361 GLEAN mRNA 595417 602359 1 + . ID=CGI_10020871; scaffold361 GLEAN mRNA 602915 609148 0.777732 - . ID=CGI_10020872; scaffold361 GLEAN promoter 609149 610148 0.777732 - . ID=CGI_10020872; scaffold361 GLEAN mRNA 611701 614882 0.865134 - . ID=CGI_10020873; scaffold361 GLEAN promoter 614883 615882 0.865134 - . ID=CGI_10020873; scaffold361 TRF Tandem_Repeat 616250 616325 82 + . . scaffold361 GLEAN mRNA 643964 651290 0.988911 - . ID=CGI_10020874; scaffold361 TRF Tandem_Repeat 647819 648611 1268 + . . scaffold361 GLEAN promoter 650461 651460 0.996321 + . ID=CGI_10020875; scaffold361 TRF Tandem_Repeat 650673 651177 295 + . . scaffold361 GLEAN promoter 651291 652290 0.988911 - . ID=CGI_10020874; scaffold361 GLEAN mRNA 651461 653199 0.996321 + . ID=CGI_10020875; scaffold361 GLEAN promoter 653174 654173 1 + . ID=CGI_10020876; scaffold361 GLEAN mRNA 654174 656524 1 + . ID=CGI_10020876; scaffold361 GLEAN mRNA 657330 667798 0.879366 - . ID=CGI_10020877; scaffold361 GLEAN promoter 667799 667896 0.879366 - . ID=CGI_10020877; scaffold36102 GLEAN promoter 13222 14221 0.998622 + . ID=CGI_10001787; scaffold36102 GLEAN mRNA 14222 14551 0.998622 + . ID=CGI_10001787; scaffold36102 GLEAN mRNA 17517 20519 0.997747 - . ID=CGI_10001788; scaffold36102 GLEAN promoter 20520 21519 0.997747 - . ID=CGI_10001788; scaffold36104 GLEAN mRNA 553 7245 0.650891 - . ID=CGI_10001785; scaffold36104 GLEAN promoter 6617 7616 0.984006 + . ID=CGI_10001786; scaffold36104 GLEAN promoter 7246 8245 0.650891 - . ID=CGI_10001785; scaffold36104 GLEAN mRNA 7617 25154 0.984006 + . ID=CGI_10001786; scaffold36108 GLEAN promoter 1424 2423 1 + . ID=CGI_10001790; scaffold36108 GLEAN mRNA 2424 12055 1 + . ID=CGI_10001790; scaffold36108 TRF Tandem_Repeat 4248 4281 52 + . . scaffold36108 GLEAN promoter 12515 13514 0.997159 + . ID=CGI_10001791; scaffold36108 GLEAN mRNA 13515 15300 0.997159 + . ID=CGI_10001791; scaffold36108 GLEAN mRNA 16154 17095 1 - . ID=CGI_10001792; scaffold36108 GLEAN promoter 17096 18095 1 - . ID=CGI_10001792; scaffold36108 TRF Tandem_Repeat 19302 19340 51 + . . scaffold36108 GLEAN promoter 20418 21417 0.999676 + . ID=CGI_10001793; scaffold36108 GLEAN mRNA 21418 27050 0.999676 + . ID=CGI_10001793; scaffold36108 TRF Tandem_Repeat 30037 30102 107 + . . scaffold36108 WUBlastX LTR_Pao 30542 31264 679 - . . scaffold36114 GLEAN mRNA 110 23021 0.439057 - . ID=CGI_10001773; scaffold36114 GLEAN promoter 23022 24021 0.439057 - . ID=CGI_10001773; scaffold36118 WUBlastX LTR_Gypsy 6 350 228 - . . scaffold36118 WUBlastX LTR_Gypsy-Cigr 259 1416 269 - . . scaffold36118 WUBlastX LTR_Gypsy 1084 1482 40 - . . scaffold36118 WUBlastX LTR_Gypsy 1135 1554 32 - . . scaffold36118 WUBlastX LTR_Gypsy 1580 2278 47 - . . scaffold36118 WUBlastX LTR_Gypsy 1688 2425 93 - . . scaffold36118 TRF Tandem_Repeat 5822 5868 94 + . . scaffold36118 WUBlastX LINE_RTE-X 5882 7312 208 + . . scaffold36118 WUBlastX LINE_RTE-X 6131 7312 274 + . . scaffold36118 WUBlastX LINE_RTE-X 7314 7517 92 + . . scaffold36118 WUBlastX LINE_RTE-X 7525 8961 603 + . . scaffold36118 TRF Tandem_Repeat 10708 10778 142 + . . scaffold36118 TRF Tandem_Repeat 10778 10819 84 + . . scaffold36118 TRF Tandem_Repeat 13841 13892 104 + . . scaffold36118 TRF Tandem_Repeat 17574 17615 59 + . . scaffold36118 WUBlastX LINE_RTE-X 24239 24442 134 - . . scaffold36118 WUBlastX LINE_RTE-X 24239 24508 92 - . . scaffold36118 WUBlastX DNA_MuDR 30748 31056 42 + . . scaffold36118 WUBlastX DNA_MuDR 30808 31116 70 + . . scaffold36122 GLEAN promoter 2755 3754 0.441043 + . ID=CGI_10001794; scaffold36122 GLEAN mRNA 3755 10839 0.441043 + . ID=CGI_10001794; scaffold36140 GLEAN promoter 5624 6623 0.998174 + . ID=CGI_10001795; scaffold36140 TRF Tandem_Repeat 6151 6204 108 + . . scaffold36140 GLEAN mRNA 6624 23811 0.998174 + . ID=CGI_10001795; scaffold36140 TRF Tandem_Repeat 7200 7255 112 + . . scaffold36140 WUBlastX LINE_L2 7974 8993 546 - . . scaffold36140 WUBlastX LINE_CR1 8921 9490 211 - . . scaffold36140 WUBlastX LINE_CR1-L2 8933 9388 298 - . . scaffold36140 WUBlastX LINE_CR1 10088 10237 32 - . . scaffold36140 TRF Tandem_Repeat 10497 10558 124 + . . scaffold36158 TRF Tandem_Repeat 3045 3227 82 + . . scaffold36158 TRF Tandem_Repeat 4218 5021 812 + . . scaffold36158 TRF Tandem_Repeat 9773 10942 1269 + . . scaffold36158 TRF Tandem_Repeat 12073 12106 59 + . . scaffold36158 GLEAN promoter 14216 15215 0.784797 + . ID=CGI_10001808; scaffold36158 GLEAN mRNA 15216 24760 0.784797 + . ID=CGI_10001808; scaffold36158 WUBlastX LINE_L1-Tx1 18432 18671 37 - . . scaffold36158 WUBlastX LINE_L1-Tx1 18489 18677 41 - . . scaffold36158 TRF Tandem_Repeat 30613 31101 507 + . . scaffold36158 TRF Tandem_Repeat 30613 31101 507 + . . scaffold36158 TRF Tandem_Repeat 30613 31101 508 + . . scaffold36170 GLEAN mRNA 184 5274 0.999675 - . ID=CGI_10001816; scaffold36170 TRF Tandem_Repeat 1289 1318 60 + . . scaffold36170 GLEAN promoter 5275 6274 0.999675 - . ID=CGI_10001816; scaffold36170 WUBlastX LTR_Gypsy-Cigr 10250 10408 45 - . . scaffold36170 WUBlastX LTR_Gypsy 11222 11695 35 - . . scaffold36170 WUBlastX LTR_Gypsy 11402 11674 62 - . . scaffold36170 WUBlastX LTR_Gypsy 14268 14612 115 + . . scaffold36170 WUBlastX LTR_Gypsy 14343 14594 134 + . . scaffold36170 WUBlastX LTR_Gypsy 14582 14986 136 + . . scaffold36170 WUBlastX LTR_ERV1 14633 15193 56 + . . scaffold36170 WUBlastX LTR_Gypsy-Cigr 15182 16255 446 + . . scaffold36170 WUBlastX LTR_Gypsy 16258 18084 1420 + . . scaffold36170 WUBlastX LTR_Gypsy 17770 18273 26 + . . scaffold36170 WUBlastX LTR_Gypsy 17791 18177 63 + . . scaffold36170 TRF Tandem_Repeat 21248 21274 54 + . . scaffold36170 WUBlastX DNA_IS4EU 21465 21620 26 + . . scaffold36170 TRF Tandem_Repeat 23985 24100 116 + . . scaffold36170 TRF Tandem_Repeat 23985 24100 116 + . . scaffold36170 TRF Tandem_Repeat 26374 26447 94 + . . scaffold36170 GLEAN mRNA 26499 27641 0.593377 - . ID=CGI_10001817; scaffold36170 GLEAN promoter 27642 28641 0.593377 - . ID=CGI_10001817; scaffold36174 GLEAN mRNA 249 6550 0.999994 - . ID=CGI_10001820; scaffold36174 GLEAN promoter 6551 7550 0.999994 - . ID=CGI_10001820; scaffold36174 GLEAN mRNA 7679 7900 0.999372 - . ID=CGI_10001821; scaffold36174 GLEAN promoter 7901 8900 0.999372 - . ID=CGI_10001821; scaffold36174 GLEAN mRNA 10736 17504 0.999547 - . ID=CGI_10001822; scaffold36174 GLEAN promoter 17505 18504 0.999547 - . ID=CGI_10001822; scaffold36174 GLEAN mRNA 18704 31155 0.879042 - . ID=CGI_10001823; scaffold36174 GLEAN promoter 31156 31879 0.879042 - . ID=CGI_10001823; scaffold36190 GLEAN mRNA 517 1405 0.651134 - . ID=CGI_10001809; scaffold36190 GLEAN promoter 1406 2405 0.651134 - . ID=CGI_10001809; scaffold36190 TRF Tandem_Repeat 5763 5887 160 + . . scaffold36190 TRF Tandem_Repeat 6875 6969 127 + . . scaffold36190 GLEAN mRNA 7139 10950 1 - . ID=CGI_10001810; scaffold36190 TRF Tandem_Repeat 7371 7399 58 + . . scaffold36190 TRF Tandem_Repeat 7448 7485 76 + . . scaffold36190 GLEAN promoter 10951 11950 1 - . ID=CGI_10001810; scaffold36190 TRF Tandem_Repeat 13029 13457 315 + . . scaffold36190 TRF Tandem_Repeat 13036 13457 176 + . . scaffold36190 TRF Tandem_Repeat 13064 13457 222 + . . scaffold36190 WUBlastX LINE_L1 13717 14505 87 + . . scaffold36190 WUBlastX LINE_CR1-L2 13912 14502 231 + . . scaffold36190 WUBlastX LINE_L2 15250 16371 340 + . . scaffold36190 WUBlastX LINE_CR1-L2 16352 18565 769 + . . scaffold36190 GLEAN promoter 18967 19966 1 + . ID=CGI_10001811; scaffold36190 GLEAN mRNA 19967 20329 1 + . ID=CGI_10001811; scaffold36190 WUBlastX DNA_Crypton 20135 20335 68 - . . scaffold36190 WUBlastX DNA_Crypton 28397 28837 80 - . . scaffold36190 WUBlastX DNA_Crypton 28813 29001 41 - . . scaffold36196 WUBlastX DNA_hAT-Tip100 5367 5696 84 - . . scaffold36196 WUBlastX DNA_hAT-Tip100 5484 5717 165 - . . scaffold36196 WUBlastX DNA_hAT-Tip100 5514 5771 93 - . . scaffold36196 WUBlastX DNA_hAT-Tip100 5523 5825 60 - . . scaffold36196 GLEAN mRNA 16418 21085 0.993314 - . ID=CGI_10001828; scaffold36196 GLEAN promoter 21086 22085 0.993314 - . ID=CGI_10001828; scaffold36196 WUBlastX DNA_hAT-Tip100 22840 23301 159 + . . scaffold36196 WUBlastX DNA_hAT-Tip100 23619 23672 22 + . . scaffold36196 TRF Tandem_Repeat 24438 24474 74 + . . scaffold36196 TRF Tandem_Repeat 24804 24832 58 + . . scaffold36196 WUBlastX LTR_Gypsy 30090 32018 1328 - . . scaffold36198 GLEAN promoter 1 824 0.999996 + . ID=CGI_10001824; scaffold36198 GLEAN mRNA 825 2186 0.999996 + . ID=CGI_10001824; scaffold36198 GLEAN mRNA 10216 17210 0.999376 - . ID=CGI_10001825; scaffold36198 GLEAN promoter 17211 18210 0.999376 - . ID=CGI_10001825; scaffold36198 GLEAN mRNA 20515 21566 1 - . ID=CGI_10001826; scaffold36198 GLEAN promoter 21567 22566 1 - . ID=CGI_10001826; scaffold36198 GLEAN mRNA 25030 29275 1 - . ID=CGI_10001827; scaffold36198 GLEAN promoter 29276 30275 1 - . ID=CGI_10001827; scaffold36202 GLEAN promoter 2245 3244 0.999232 + . ID=CGI_10001812; scaffold36202 GLEAN mRNA 3245 23503 0.999232 + . ID=CGI_10001812; scaffold36202 WUBlastX LTR_Ngaro 20512 20757 26 - . . scaffold36202 WUBlastX LTR_Ngaro 20566 20757 34 - . . scaffold36202 WUBlastX LTR_Ngaro 20747 20965 49 - . . scaffold36202 WUBlastX LTR_Ngaro 20871 21449 71 - . . scaffold36202 WUBlastX LTR_Ngaro 20871 21314 85 - . . scaffold36202 WUBlastX LTR_Gypsy 28020 28085 46 - . . scaffold36202 WUBlastX LTR_Gypsy 28057 28575 47 - . . scaffold36202 WUBlastX LTR_Gypsy-Gmr1 28102 28365 60 - . . scaffold36202 WUBlastX LTR_Gypsy-Cigr 28207 28401 60 - . . scaffold36202 WUBlastX LTR_Gypsy 28607 28702 44 - . . scaffold36202 WUBlastX LTR_Gypsy 28683 28991 60 - . . scaffold36202 WUBlastX LTR_Gypsy 28725 28976 114 - . . scaffold36202 WUBlastX LTR_Gypsy 28993 29472 242 - . . scaffold36208 GLEAN promoter 3767 4766 0.999938 + . ID=CGI_10001834; scaffold36208 GLEAN mRNA 4767 9076 0.999938 + . ID=CGI_10001834; scaffold36208 GLEAN promoter 12075 13074 1 + . ID=CGI_10001835; scaffold36208 GLEAN mRNA 13075 23814 1 + . ID=CGI_10001835; scaffold36208 GLEAN promoter 24377 25376 1 + . ID=CGI_10001836; scaffold36208 GLEAN mRNA 25377 27245 1 + . ID=CGI_10001836; scaffold36210 GLEAN promoter 474 1473 0.999999 + . ID=CGI_10001829; scaffold36210 GLEAN mRNA 1474 16183 0.999999 + . ID=CGI_10001829; scaffold36210 GLEAN promoter 24244 25243 1 + . ID=CGI_10001830; scaffold36210 GLEAN mRNA 25244 27600 1 + . ID=CGI_10001830; scaffold36218 WUBlastX DNA_Maverick 7083 7220 29 + . . scaffold36240 GLEAN promoter 1 19 1 + . ID=CGI_10001837; scaffold36240 GLEAN mRNA 20 671 1 + . ID=CGI_10001837; scaffold36278 TRF Tandem_Repeat 3726 3763 76 + . . scaffold36278 GLEAN mRNA 14145 16932 0.651135 - . ID=CGI_10001847; scaffold36278 GLEAN promoter 16933 17932 0.651135 - . ID=CGI_10001847; scaffold36278 TRF Tandem_Repeat 21060 21195 194 + . . scaffold36278 GLEAN mRNA 22300 32002 0.651135 - . ID=CGI_10001848; scaffold36278 WUBlastX DNA_PiggyBac 26207 26746 127 - . . scaffold36278 WUBlastX DNA_PiggyBac 26782 26844 41 - . . scaffold36278 WUBlastX DNA_PiggyBac 26785 26895 20 - . . scaffold36278 TRF Tandem_Repeat 27490 28791 1282 + . . scaffold36278 WUBlastX DNA_PiggyBac 28794 29246 94 - . . scaffold36278 WUBlastX DNA_PiggyBac 29290 29520 70 - . . scaffold36278 TRF Tandem_Repeat 29864 30798 671 + . . scaffold36278 TRF Tandem_Repeat 30020 30798 1215 + . . scaffold36278 GLEAN promoter 32003 32993 0.651135 - . ID=CGI_10001848; scaffold36286 GLEAN promoter 1724 2723 0.999236 + . ID=CGI_10001838; scaffold36286 GLEAN mRNA 2724 13394 0.999236 + . ID=CGI_10001838; scaffold36286 TRF Tandem_Repeat 8801 8888 88 + . . scaffold36286 TRF Tandem_Repeat 9931 10064 124 + . . scaffold36286 WUBlastX LTR_DIRS 14536 14748 119 - . . scaffold36286 TRF Tandem_Repeat 16970 17007 76 + . . scaffold36286 TRF Tandem_Repeat 23586 23620 61 + . . scaffold36286 TRF Tandem_Repeat 30980 31024 81 + . . scaffold36286 TRF Tandem_Repeat 30980 31027 60 + . . scaffold36298 GLEAN promoter 1 699 0.999103 + . ID=CGI_10001849; scaffold36298 GLEAN mRNA 700 6669 0.999103 + . ID=CGI_10001849; scaffold363 GLEAN promoter 2233 3232 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 2890 2956 125 + . . scaffold363 GLEAN mRNA 3233 16249 1 + . ID=CGI_10019283; scaffold363 TRF Tandem_Repeat 3432 3509 70 + . . scaffold363 GLEAN mRNA 3677 30284 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 6703 6748 92 + . . scaffold363 TRF Tandem_Repeat 11604 11707 75 + . . scaffold363 TRF Tandem_Repeat 11629 11728 105 + . . scaffold363 TRF Tandem_Repeat 12849 13135 369 + . . scaffold363 TRF Tandem_Repeat 13278 13312 70 + . . scaffold363 TRF Tandem_Repeat 13448 13594 159 + . . scaffold363 TRF Tandem_Repeat 13485 13642 183 + . . scaffold363 TRF Tandem_Repeat 16574 16701 184 + . . scaffold363 TRF Tandem_Repeat 19149 19253 142 + . . scaffold363 TRF Tandem_Repeat 20819 22081 1997 + . . scaffold363 TRF Tandem_Repeat 25819 26566 597 + . . scaffold363 GLEAN promoter 30285 31284 0.662434 - . ID=CGI_10019284; scaffold363 TRF Tandem_Repeat 34553 34932 634 + . . scaffold363 TRF Tandem_Repeat 35891 35943 106 + . . scaffold363 TRF Tandem_Repeat 36581 36842 389 + . . scaffold363 WUBlastX LINE_RTE-X 38366 38800 28 + . . scaffold363 WUBlastX LINE_RTE-X 38453 38803 89 + . . scaffold363 GLEAN promoter 48049 49048 1 + . ID=CGI_10019285; scaffold363 TRF Tandem_Repeat 48419 48954 303 + . . scaffold363 TRF Tandem_Repeat 48419 48950 168 + . . scaffold363 TRF Tandem_Repeat 48433 48942 492 + . . scaffold363 TRF Tandem_Repeat 48446 48636 139 + . . scaffold363 TRF Tandem_Repeat 48756 48883 217 + . . scaffold363 GLEAN mRNA 49049 50475 1 + . ID=CGI_10019285; scaffold363 TRF Tandem_Repeat 49724 49762 78 + . . scaffold363 GLEAN promoter 56901 57900 0.999999 + . ID=CGI_10019286; scaffold363 GLEAN mRNA 57901 64857 0.999999 + . ID=CGI_10019286; scaffold363 TRF Tandem_Repeat 60107 60138 64 + . . scaffold363 TRF Tandem_Repeat 62918 62992 80 + . . scaffold363 WUBlastX LINE_L1-Tx1 68152 68247 22 - . . scaffold363 WUBlastX LINE_L1 68240 68488 46 - . . scaffold363 WUBlastX LINE_L1 68384 68755 111 - . . scaffold363 WUBlastX LINE_L1 68387 68827 78 - . . scaffold363 WUBlastX LINE_L1 68746 68883 55 - . . scaffold363 GLEAN mRNA 70356 71907 0.999997 - . ID=CGI_10019287; scaffold363 GLEAN promoter 71908 72907 0.999997 - . ID=CGI_10019287; scaffold363 TRF Tandem_Repeat 77997 78047 93 + . . scaffold363 TRF Tandem_Repeat 78045 78079 70 + . . scaffold363 TRF Tandem_Repeat 78176 78215 62 + . . scaffold363 TRF Tandem_Repeat 79347 79420 141 + . . scaffold363 GLEAN promoter 83032 84031 0.998701 + . ID=CGI_10019288; scaffold363 GLEAN mRNA 84032 96197 0.998701 + . ID=CGI_10019288; scaffold363 GLEAN mRNA 95165 111779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Harbinger 97875 98753 595 + . . scaffold363 TRF Tandem_Repeat 99447 99494 51 + . . scaffold363 TRF Tandem_Repeat 105876 106233 469 + . . scaffold363 TRF Tandem_Repeat 105974 106032 50 + . . scaffold363 TRF Tandem_Repeat 106043 106179 103 + . . scaffold363 WUBlastX DNA_Academ 109056 109295 97 - . . scaffold363 WUBlastX DNA_Academ 109059 109349 49 - . . scaffold363 WUBlastX DNA_Academ 109348 110097 172 - . . scaffold363 WUBlastX DNA_Academ 109396 109980 305 - . . scaffold363 WUBlastX DNA_Academ 110902 111057 32 - . . scaffold363 WUBlastX DNA_Academ 111048 111863 388 - . . scaffold363 GLEAN promoter 111780 112779 0.789891 - . ID=CGI_10019289; scaffold363 WUBlastX DNA_Academ 111854 112213 170 - . . scaffold363 GLEAN mRNA 113010 122923 0.999905 - . ID=CGI_10019290; scaffold363 TRF Tandem_Repeat 117923 118254 225 + . . scaffold363 TRF Tandem_Repeat 117952 118252 204 + . . scaffold363 GLEAN promoter 122924 123923 0.999905 - . ID=CGI_10019290; scaffold363 GLEAN promoter 125915 126914 0.99909 + . ID=CGI_10019291; scaffold363 GLEAN mRNA 126915 145107 0.99909 + . ID=CGI_10019291; scaffold363 TRF Tandem_Repeat 137727 137784 73 + . . scaffold363 TRF Tandem_Repeat 137743 137784 66 + . . scaffold363 TRF Tandem_Repeat 137954 138986 1768 + . . scaffold363 TRF Tandem_Repeat 141089 141973 1188 + . . scaffold363 GLEAN promoter 150522 151521 0.678055 + . ID=CGI_10019292; scaffold363 GLEAN mRNA 151522 166442 0.678055 + . ID=CGI_10019292; scaffold363 TRF Tandem_Repeat 160219 160273 110 + . . scaffold363 TRF Tandem_Repeat 161809 161886 149 + . . scaffold363 TRF Tandem_Repeat 162080 162104 50 + . . scaffold363 TRF Tandem_Repeat 163086 163124 78 + . . scaffold363 TRF Tandem_Repeat 163415 163445 62 + . . scaffold363 TRF Tandem_Repeat 165770 166696 1164 + . . scaffold363 GLEAN promoter 166262 167261 0.999992 + . ID=CGI_10019293; scaffold363 TRF Tandem_Repeat 166858 166923 123 + . . scaffold363 TRF Tandem_Repeat 166960 167006 85 + . . scaffold363 GLEAN mRNA 167262 169236 0.999992 + . ID=CGI_10019293; scaffold363 GLEAN promoter 171686 172685 0.999372 + . ID=CGI_10019294; scaffold363 GLEAN mRNA 172686 172901 0.999372 + . ID=CGI_10019294; scaffold363 TRF Tandem_Repeat 173017 173064 96 + . . scaffold363 TRF Tandem_Repeat 173487 173555 138 + . . scaffold363 TRF Tandem_Repeat 174344 174417 132 + . . scaffold363 TRF Tandem_Repeat 174507 174553 94 + . . scaffold363 TRF Tandem_Repeat 178311 178344 68 + . . scaffold363 TRF Tandem_Repeat 180102 180142 75 + . . scaffold363 TRF Tandem_Repeat 181205 181263 91 + . . scaffold363 TRF Tandem_Repeat 186739 186797 102 + . . scaffold363 TRF Tandem_Repeat 187487 187565 158 + . . scaffold363 TRF Tandem_Repeat 189905 189961 114 + . . scaffold363 TRF Tandem_Repeat 191796 191846 102 + . . scaffold363 GLEAN promoter 193016 194015 0.999982 + . ID=CGI_10019295; scaffold363 GLEAN mRNA 194016 197931 0.999982 + . ID=CGI_10019295; scaffold363 TRF Tandem_Repeat 195278 195343 132 + . . scaffold363 TRF Tandem_Repeat 195459 195500 84 + . . scaffold363 GLEAN promoter 198137 199136 0.999596 + . ID=CGI_10019296; scaffold363 GLEAN mRNA 199137 204611 0.999596 + . ID=CGI_10019296; scaffold363 TRF Tandem_Repeat 200511 200566 60 + . . scaffold363 WUBlastX DNA_hAT-Tip100 203163 203708 21 + . . scaffold363 WUBlastX LTR_Gypsy 205106 205159 23 - . . scaffold363 WUBlastX LTR_Gypsy 205526 205618 20 - . . scaffold363 WUBlastX LTR_Gypsy 205526 205600 20 - . . scaffold363 WUBlastX LTR_Gypsy 205638 205946 33 - . . scaffold363 WUBlastX LTR_Gypsy 205719 205958 88 - . . scaffold363 WUBlastX LTR_Gypsy 205782 205958 99 - . . scaffold363 WUBlastX LTR_Gypsy 205961 206314 185 - . . scaffold363 WUBlastX LTR_Gypsy 205961 206422 114 - . . scaffold363 WUBlastX LTR_Gypsy 206358 206468 35 - . . scaffold363 WUBlastX LTR_Gypsy 206358 206441 46 - . . scaffold363 GLEAN promoter 208102 209101 0.402154 + . ID=CGI_10019297; scaffold363 GLEAN mRNA 209102 227105 0.402154 + . ID=CGI_10019297; scaffold363 TRF Tandem_Repeat 210384 210419 72 + . . scaffold363 TRF Tandem_Repeat 216121 216157 74 + . . scaffold363 GLEAN promoter 231987 232986 0.825467 + . ID=CGI_10019298; scaffold363 GLEAN mRNA 232987 237045 0.825467 + . ID=CGI_10019298; scaffold363 GLEAN mRNA 238043 248043 0.648316 - . ID=CGI_10019299; scaffold363 TRF Tandem_Repeat 244398 244466 84 + . . scaffold363 TRF Tandem_Repeat 244398 244466 84 + . . scaffold363 TRF Tandem_Repeat 244398 244466 84 + . . scaffold363 WUBlastX LINE_RTE-BovB 244945 245235 76 + . . scaffold363 WUBlastX LINE_RTE-BovB 245014 245262 115 + . . scaffold363 GLEAN promoter 248044 249043 0.648316 - . ID=CGI_10019299; scaffold363 WUBlastX LINE_RTE-X 248986 249192 84 + . . scaffold363 WUBlastX LINE_RTE-X 248986 249303 39 + . . scaffold363 WUBlastX LTR_Gypsy 266277 267992 1087 + . . scaffold363 WUBlastX LTR_Gypsy 267956 269311 1189 + . . scaffold363 WUBlastX LTR_Gypsy 269295 270203 715 + . . scaffold363 WUBlastX LTR_Copia 270479 270520 20 + . . scaffold363 GLEAN mRNA 270812 292199 0.745243 - . ID=CGI_10019300; scaffold363 TRF Tandem_Repeat 271417 272470 844 + . . scaffold363 WUBlastX DNA_Sola 276661 276813 106 - . . scaffold363 TRF Tandem_Repeat 276820 276934 124 + . . scaffold363 TRF Tandem_Repeat 277174 277266 168 + . . scaffold363 TRF Tandem_Repeat 277326 277381 103 + . . scaffold363 TRF Tandem_Repeat 277857 277983 85 + . . scaffold363 GLEAN promoter 291239 292238 1 + . ID=CGI_10019301; scaffold363 GLEAN promoter 292200 293199 0.745243 - . ID=CGI_10019300; scaffold363 GLEAN mRNA 292239 292583 1 + . ID=CGI_10019301; scaffold363 GLEAN promoter 296862 297861 0.41723 + . ID=CGI_10019302; scaffold363 TRF Tandem_Repeat 296947 296986 59 + . . scaffold363 TRF Tandem_Repeat 297348 297471 187 + . . scaffold363 GLEAN mRNA 297862 310682 0.41723 + . ID=CGI_10019302; scaffold363 GLEAN mRNA 300274 308823 0.999195 - . ID=CGI_10019303; scaffold363 TRF Tandem_Repeat 300734 300771 51 + . . scaffold363 TRF Tandem_Repeat 304329 304358 51 + . . scaffold363 TRF Tandem_Repeat 305029 305102 130 + . . scaffold363 TRF Tandem_Repeat 305315 305342 56 + . . scaffold363 TRF Tandem_Repeat 306193 306267 150 + . . scaffold363 GLEAN promoter 308824 309823 0.999195 - . ID=CGI_10019303; scaffold363 TRF Tandem_Repeat 309934 311235 1461 + . . scaffold363 GLEAN mRNA 325507 325725 0.999451 - . ID=CGI_10019304; scaffold363 GLEAN promoter 325726 326725 0.999451 - . ID=CGI_10019304; scaffold363 WUBlastX LINE_L2 331269 332852 935 + . . scaffold363 TRF Tandem_Repeat 336887 336935 73 + . . scaffold363 WUBlastX LINE_Penelope 355751 356098 80 - . . scaffold363 WUBlastX LINE_Penelope 356052 356825 148 - . . scaffold363 WUBlastX LINE_Penelope 356193 356870 237 - . . scaffold363 WUBlastX LINE_Penelope 356777 356950 76 - . . scaffold363 WUBlastX LINE_Penelope 356932 357042 26 - . . scaffold363 WUBlastX LINE_Penelope 357380 357544 35 - . . scaffold363 WUBlastX LINE_Penelope 357413 357541 50 - . . scaffold363 WUBlastX LINE_Penelope 357516 357785 118 - . . scaffold363 WUBlastX LTR_DIRS 357974 358495 28 - . . scaffold363 WUBlastX LTR_Ngaro 358091 358678 331 - . . scaffold363 WUBlastX LINE_CR1 359636 360028 58 + . . scaffold363 WUBlastX LINE_CR1-L2 360193 360468 65 + . . scaffold363 WUBlastX LINE_RTE-RTE 360357 360524 22 + . . scaffold363 TRF Tandem_Repeat 360525 360567 59 + . . scaffold363 WUBlastX LINE_L2 361332 361388 20 + . . scaffold363 WUBlastX LTR_Ngaro 362137 362430 51 - . . scaffold363 WUBlastX LTR_Ngaro 362161 362304 66 - . . scaffold363 TRF Tandem_Repeat 363244 363302 57 + . . scaffold363 WUBlastX LTR_Ngaro 364960 365208 51 - . . scaffold363 WUBlastX LTR_Ngaro 365041 365214 68 - . . scaffold363 WUBlastX LTR_DIRS 372790 373299 377 + . . scaffold363 WUBlastX LTR_DIRS 373432 374244 652 + . . scaffold363 TRF Tandem_Repeat 378608 379739 1669 + . . scaffold363 TRF Tandem_Repeat 384377 384429 106 + . . scaffold363 TRF Tandem_Repeat 385964 386086 185 + . . scaffold363 TRF Tandem_Repeat 385974 386102 130 + . . scaffold363 TRF Tandem_Repeat 402322 402437 71 + . . scaffold363 TRF Tandem_Repeat 402326 402424 85 + . . scaffold363 WUBlastX LTR_Pao 402501 403055 38 + . . scaffold363 WUBlastX LTR_Pao 402609 403073 101 + . . scaffold363 TRF Tandem_Repeat 417541 417604 92 + . . scaffold363 GLEAN mRNA 418126 419400 0.531502 - . ID=CGI_10019305; scaffold363 GLEAN promoter 419401 420400 0.531502 - . ID=CGI_10019305; scaffold363 GLEAN promoter 425498 426497 0.999949 + . ID=CGI_10019306; scaffold363 WUBlastX DNA_Academ 426225 426989 363 + . . scaffold363 GLEAN mRNA 426498 426851 0.999949 + . ID=CGI_10019306; scaffold363 WUBlastX DNA_Academ 445101 445694 193 + . . scaffold363 WUBlastX DNA_Academ 445703 445849 25 + . . scaffold363 WUBlastX DNA_Academ 445706 445819 39 + . . scaffold363 WUBlastX DNA_Academ 445715 445873 22 + . . scaffold363 TRF Tandem_Repeat 446075 446129 58 + . . scaffold363 TRF Tandem_Repeat 446076 446136 79 + . . scaffold363 TRF Tandem_Repeat 446091 446136 56 + . . scaffold363 TRF Tandem_Repeat 446306 447165 1334 + . . scaffold363 GLEAN mRNA 461207 464146 0.990785 - . ID=CGI_10019307; scaffold363 GLEAN promoter 464147 465146 0.990785 - . ID=CGI_10019307; scaffold363 GLEAN promoter 466074 467073 1 + . ID=CGI_10019308; scaffold363 GLEAN mRNA 467074 475752 1 + . ID=CGI_10019308; scaffold363 TRF Tandem_Repeat 469015 470005 1505 + . . scaffold363 GLEAN mRNA 480857 493348 1 - . ID=CGI_10019309; scaffold363 TRF Tandem_Repeat 486072 486125 58 + . . scaffold363 TRF Tandem_Repeat 486075 486120 58 + . . scaffold363 GLEAN promoter 493349 494348 1 - . ID=CGI_10019309; scaffold363 TRF Tandem_Repeat 497543 497619 64 + . . scaffold363 TRF Tandem_Repeat 499684 499748 130 + . . scaffold363 GLEAN mRNA 500751 501623 1 - . ID=CGI_10019310; scaffold363 WUBlastX LTR_Gypsy 500928 501503 22 - . . scaffold363 WUBlastX LTR_Gypsy 501162 501521 44 - . . scaffold363 WUBlastX LTR_Gypsy 501291 501518 54 - . . scaffold363 WUBlastX LTR_Gypsy 501393 501554 29 - . . scaffold363 GLEAN promoter 501624 502623 1 - . ID=CGI_10019310; scaffold363 GLEAN mRNA 503368 507803 0.636005 - . ID=CGI_10019311; scaffold363 GLEAN promoter 507804 508803 0.636005 - . ID=CGI_10019311; scaffold363 GLEAN promoter 508476 509475 0.543882 + . ID=CGI_10019312; scaffold363 GLEAN mRNA 509476 539448 0.543882 + . ID=CGI_10019312; scaffold363 TRF Tandem_Repeat 511867 511902 72 + . . scaffold363 WUBlastX DNA_IS4EU 513312 513473 41 - . . scaffold363 WUBlastX DNA_IS4EU 513339 513500 52 - . . scaffold363 WUBlastX DNA_IS4EU 514268 514591 108 - . . scaffold363 TRF Tandem_Repeat 539916 539986 142 + . . scaffold363 TRF Tandem_Repeat 540973 541022 84 + . . scaffold363 GLEAN mRNA 547430 557852 0.83729 - . ID=CGI_10019313; scaffold363 TRF Tandem_Repeat 550008 550043 54 + . . scaffold363 GLEAN promoter 557853 558852 0.83729 - . ID=CGI_10019313; scaffold363 GLEAN promoter 559654 560653 0.999675 + . ID=CGI_10019314; scaffold363 GLEAN mRNA 560654 572387 0.999675 + . ID=CGI_10019314; scaffold363 TRF Tandem_Repeat 563785 563818 68 + . . scaffold363 GLEAN promoter 571459 572458 0.839415 + . ID=CGI_10019315; scaffold363 GLEAN mRNA 572459 589785 0.839415 + . ID=CGI_10019315; scaffold363 WUBlastX LINE_Penelope 573481 573741 71 - . . scaffold363 GLEAN mRNA 578222 578923 0.999745 - . ID=CGI_10019316; scaffold363 GLEAN promoter 578924 579923 0.999745 - . ID=CGI_10019316; scaffold363 TRF Tandem_Repeat 580872 580925 108 + . . scaffold36314 GLEAN promoter 4912 5911 1 + . ID=CGI_10001850; scaffold36314 GLEAN mRNA 5912 6142 1 + . ID=CGI_10001850; scaffold36314 GLEAN mRNA 7919 28252 0.999676 - . ID=CGI_10001851; scaffold36314 GLEAN promoter 28253 29252 0.999676 - . ID=CGI_10001851; scaffold36318 GLEAN mRNA 2800 23058 0.772748 - . ID=CGI_10001852; scaffold36318 GLEAN promoter 23059 24058 0.772748 - . ID=CGI_10001852; scaffold36318 GLEAN promoter 23184 24183 1 + . ID=CGI_10001853; scaffold36318 GLEAN mRNA 24184 24969 1 + . ID=CGI_10001853; scaffold36318 GLEAN mRNA 27450 31440 0.999993 - . ID=CGI_10001854; scaffold36318 GLEAN promoter 31441 32440 0.999993 - . ID=CGI_10001854; scaffold36324 GLEAN promoter 16566 17565 0.694805 + . ID=CGI_10001839; scaffold36324 GLEAN mRNA 17566 26295 0.694805 + . ID=CGI_10001839; scaffold36324 GLEAN mRNA 25675 25866 0.618241 - . ID=CGI_10001840; scaffold36324 GLEAN promoter 25867 26866 0.618241 - . ID=CGI_10001840; scaffold36334 WUBlastX LINE_RTE-X 9345 9599 78 - . . scaffold36334 WUBlastX LINE_RTE-X 9441 9641 37 - . . scaffold36334 WUBlastX LINE_RTE-X 9949 10326 139 - . . scaffold36334 WUBlastX LINE_RTE-X 10329 10580 161 - . . scaffold36334 WUBlastX LINE_RTE-X 10589 11149 238 - . . scaffold36334 WUBlastX LINE_RTE-BovB 11124 11273 22 - . . scaffold36334 WUBlastX LINE_RTE-X 11175 11669 64 - . . scaffold36334 TRF Tandem_Repeat 18822 18932 204 + . . scaffold36334 TRF Tandem_Repeat 25226 25319 181 + . . scaffold36336 GLEAN promoter 8214 9213 0.962769 + . ID=CGI_10001863; scaffold36336 GLEAN mRNA 9214 26565 0.962769 + . ID=CGI_10001863; scaffold36336 TRF Tandem_Repeat 10208 10260 51 + . . scaffold36336 TRF Tandem_Repeat 10222 10494 215 + . . scaffold36336 TRF Tandem_Repeat 15055 15097 86 + . . scaffold36336 TRF Tandem_Repeat 20163 20476 296 + . . scaffold36336 TRF Tandem_Repeat 20175 20476 231 + . . scaffold36336 TRF Tandem_Repeat 23900 25060 1801 + . . scaffold36336 TRF Tandem_Repeat 26611 26655 63 + . . scaffold36336 WUBlastX DNA_PiggyBac 28544 29650 658 + . . scaffold36336 TRF Tandem_Repeat 31720 32444 852 + . . scaffold36336 TRF Tandem_Repeat 32646 32790 156 + . . scaffold36336 TRF Tandem_Repeat 32646 32790 156 + . . scaffold36336 TRF Tandem_Repeat 32647 32790 148 + . . scaffold36336 TRF Tandem_Repeat 33044 33254 138 + . . scaffold36336 TRF Tandem_Repeat 33052 33265 140 + . . scaffold36342 TRF Tandem_Repeat 6051 6103 106 + . . scaffold36342 WUBlastX LINE_RTE-BovB 10400 11698 957 + . . scaffold36342 WUBlastX LINE_RTE-BovB 11326 12126 349 + . . scaffold36342 WUBlastX DNA_TcMar-Marin 14752 14835 24 - . . scaffold36342 WUBlastX DNA_TcMar-Marin 14844 14921 33 - . . scaffold36342 WUBlastX LTR_Gypsy-Troyk 16358 17287 901 + . . scaffold36342 WUBlastX LTR_Gypsy 16910 19789 1763 + . . scaffold36342 WUBlastX LTR_Gypsy-Troyk 17615 19942 2394 + . . scaffold36342 WUBlastX LTR_Gypsy-Troyk 19950 20861 549 + . . scaffold36342 TRF Tandem_Repeat 25820 25936 118 + . . scaffold36342 GLEAN mRNA 28375 33364 1 - . ID=CGI_10001862; scaffold36342 TRF Tandem_Repeat 31232 31274 86 + . . scaffold36342 GLEAN promoter 33365 33593 1 - . ID=CGI_10001862; scaffold36348 GLEAN promoter 20 1019 0.999878 + . ID=CGI_10001867; scaffold36348 GLEAN mRNA 1020 11646 0.999878 + . ID=CGI_10001867; scaffold36356 TRF Tandem_Repeat 3 50 78 + . . scaffold36356 TRF Tandem_Repeat 2343 2506 78 + . . scaffold36356 TRF Tandem_Repeat 2558 2860 120 + . . scaffold36356 TRF Tandem_Repeat 13117 13151 52 + . . scaffold36356 WUBlastX LINE_RTE-BovB 27222 27701 74 + . . scaffold36356 WUBlastX LINE_RTE-BovB 27315 28187 281 + . . scaffold36356 WUBlastX LINE_RTE-BovB 27670 28734 188 + . . scaffold36356 WUBlastX LINE_RTE-BovB 28438 28743 200 + . . scaffold36356 WUBlastX LINE_RTE-BovB 28749 29039 217 + . . scaffold36356 WUBlastX LINE_RTE-BovB 29042 29860 131 + . . scaffold36362 WUBlastX DNA_hAT-Tip100 1468 1782 188 - . . scaffold36362 WUBlastX DNA_hAT-Tip100 1802 2281 108 - . . scaffold36362 WUBlastX DNA_hAT-Tip100 2284 2487 91 - . . scaffold36362 WUBlastX DNA_hAT-Tip100 2284 2586 54 - . . scaffold36362 TRF Tandem_Repeat 3865 3897 66 + . . scaffold36362 GLEAN promoter 5833 6832 0.747146 + . ID=CGI_10001864; scaffold36362 GLEAN promoter 6677 7676 0.997172 + . ID=CGI_10001865; scaffold36362 GLEAN mRNA 6833 7228 0.747146 + . ID=CGI_10001864; scaffold36362 GLEAN mRNA 7677 7982 0.997172 + . ID=CGI_10001865; scaffold36362 GLEAN mRNA 8676 8879 0.978072 - . ID=CGI_10001866; scaffold36362 GLEAN promoter 8880 9879 0.978072 - . ID=CGI_10001866; scaffold36362 TRF Tandem_Repeat 16734 17564 1073 + . . scaffold36362 TRF Tandem_Repeat 17574 17603 51 + . . scaffold36362 TRF Tandem_Repeat 19032 19071 80 + . . scaffold36362 WUBlastX DNA_Harbinger 32684 33076 197 + . . scaffold36378 GLEAN promoter 671 1670 1 + . ID=CGI_10001872; scaffold36378 GLEAN mRNA 1671 10574 1 + . ID=CGI_10001872; scaffold36378 TRF Tandem_Repeat 14546 14861 553 + . . scaffold36378 TRF Tandem_Repeat 15441 15594 119 + . . scaffold36378 GLEAN mRNA 15976 16656 0.999048 - . ID=CGI_10001873; scaffold36378 GLEAN promoter 16657 17656 0.999048 - . ID=CGI_10001873; scaffold36378 TRF Tandem_Repeat 20178 20207 60 + . . scaffold36378 GLEAN promoter 26739 27738 1 + . ID=CGI_10001874; scaffold36378 GLEAN mRNA 27739 29040 1 + . ID=CGI_10001874; scaffold36378 GLEAN mRNA 29600 33200 1 - . ID=CGI_10001875; scaffold36378 GLEAN promoter 33201 34152 1 - . ID=CGI_10001875; scaffold36378 WUBlastX LINE_RTE-X 33281 33973 154 + . . scaffold36384 GLEAN promoter 17307 18306 0.905493 + . ID=CGI_10001868; scaffold36384 GLEAN mRNA 18307 25902 0.905493 + . ID=CGI_10001868; scaffold36384 GLEAN mRNA 27886 31161 0.999999 - . ID=CGI_10001869; scaffold36384 GLEAN promoter 31162 32161 0.999999 - . ID=CGI_10001869; scaffold36390 GLEAN promoter 4206 5205 0.999984 + . ID=CGI_10001879; scaffold36390 GLEAN mRNA 5206 5853 0.999984 + . ID=CGI_10001879; scaffold36390 WUBlastX LTR_Gypsy 5323 5811 78 + . . scaffold36390 WUBlastX LTR_Gypsy 5437 5805 86 + . . scaffold36390 WUBlastX LTR_Gypsy 5527 5805 90 + . . scaffold36390 GLEAN promoter 5706 6705 0.999372 + . ID=CGI_10001881; scaffold36390 GLEAN mRNA 6020 6256 0.59015 - . ID=CGI_10001880; scaffold36390 GLEAN promoter 6257 7256 0.59015 - . ID=CGI_10001880; scaffold36390 GLEAN mRNA 6706 7155 0.999372 + . ID=CGI_10001881; scaffold36390 GLEAN promoter 7772 8771 0.999048 + . ID=CGI_10001882; scaffold36390 GLEAN mRNA 8772 9368 0.999048 + . ID=CGI_10001882; scaffold36390 GLEAN mRNA 11518 17109 0.557561 - . ID=CGI_10001883; scaffold36390 GLEAN promoter 17048 18047 1 + . ID=CGI_10001884; scaffold36390 GLEAN promoter 17110 18109 0.557561 - . ID=CGI_10001883; scaffold36390 TRF Tandem_Repeat 17515 17757 137 + . . scaffold36390 TRF Tandem_Repeat 17521 17757 158 + . . scaffold36390 GLEAN mRNA 18048 18497 1 + . ID=CGI_10001884; scaffold36390 WUBlastX DNA_Kolobok-IS4 20239 20391 46 + . . scaffold36390 WUBlastX LTR_Gypsy 21966 22121 39 - . . scaffold36390 WUBlastX LTR_Gypsy 22136 22273 66 - . . scaffold36390 GLEAN promoter 23071 24070 0.999984 + . ID=CGI_10001885; scaffold36390 WUBlastX LTR_Gypsy 23456 23737 101 + . . scaffold36390 GLEAN promoter 23542 24541 0.99755 + . ID=CGI_10001886; scaffold36390 GLEAN mRNA 24071 24376 0.999984 + . ID=CGI_10001885; scaffold36390 WUBlastX LTR_Gypsy 24270 24458 23 + . . scaffold36390 GLEAN mRNA 24542 27675 0.99755 + . ID=CGI_10001886; scaffold36390 WUBlastX LTR_Pao 28641 30149 1052 + . . scaffold36390 WUBlastX LTR_Pao 30133 30213 43 + . . scaffold36390 WUBlastX LTR_Pao 30148 30234 25 + . . scaffold36390 WUBlastX LTR_Pao 30236 30973 635 + . . scaffold36390 WUBlastX LTR_Pao 30987 31022 22 + . . scaffold36390 WUBlastX LTR_Gypsy 33924 34064 119 + . . scaffold36390 TRF Tandem_Repeat 34188 34288 75 + . . scaffold36390 TRF Tandem_Repeat 34193 34286 111 + . . scaffold36398 TRF Tandem_Repeat 1 60 75 + . . scaffold36398 WUBlastX LINE_Penelope 2191 2382 41 - . . scaffold36398 WUBlastX LINE_Penelope 2390 2953 215 - . . scaffold36398 GLEAN promoter 6931 7930 0.660768 + . ID=CGI_10001931; scaffold36398 GLEAN mRNA 7931 20201 0.660768 + . ID=CGI_10001931; scaffold36398 TRF Tandem_Repeat 8517 8569 106 + . . scaffold36398 TRF Tandem_Repeat 9303 9412 57 + . . scaffold36398 TRF Tandem_Repeat 9947 9996 100 + . . scaffold36398 TRF Tandem_Repeat 17668 17724 114 + . . scaffold36398 WUBlastX LTR_Gypsy 24046 24207 54 - . . scaffold36398 WUBlastX LTR_Gypsy 24091 25740 684 - . . scaffold36398 WUBlastX LTR_Gypsy-Cigr 24367 26478 726 - . . scaffold36398 WUBlastX LTR_Gypsy 26474 27358 310 - . . scaffold36398 WUBlastX LTR_Gypsy 26474 27028 455 - . . scaffold36398 WUBlastX LTR_Gypsy 27619 27786 34 - . . scaffold36398 WUBlastX LTR_Gypsy 27646 28143 76 - . . scaffold36398 WUBlastX LTR_Gypsy 28200 28649 56 - . . scaffold36398 WUBlastX LTR_Gypsy 28221 28799 54 - . . scaffold36398 WUBlastX LTR_Gypsy 28248 28547 83 - . . scaffold36398 WUBlastX LTR_Gypsy 28275 28901 49 - . . scaffold36398 WUBlastX LTR_Gypsy 28863 29660 31 - . . scaffold36398 WUBlastX LTR_Gypsy 29085 29636 59 - . . scaffold36398 WUBlastX LTR_Gypsy 29214 29636 79 - . . scaffold364 TRF Tandem_Repeat 2311 2427 137 + . . scaffold364 TRF Tandem_Repeat 3285 3517 197 + . . scaffold364 TRF Tandem_Repeat 3289 3517 148 + . . scaffold364 GLEAN promoter 17377 18376 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 17734 17764 62 + . . scaffold364 GLEAN mRNA 18377 81368 0.812692 + . ID=CGI_10022675; scaffold364 TRF Tandem_Repeat 19152 19193 61 + . . scaffold364 TRF Tandem_Repeat 19286 19325 80 + . . scaffold364 TRF Tandem_Repeat 25597 25626 60 + . . scaffold364 TRF Tandem_Repeat 33978 34536 940 + . . scaffold364 TRF Tandem_Repeat 39806 39848 86 + . . scaffold364 TRF Tandem_Repeat 39859 40716 1185 + . . scaffold364 TRF Tandem_Repeat 48849 48917 57 + . . scaffold364 TRF Tandem_Repeat 51139 51341 354 + . . scaffold364 TRF Tandem_Repeat 51361 51391 62 + . . scaffold364 WUBlastX LINE_RTE-X 51736 51981 118 - . . scaffold364 TRF Tandem_Repeat 60853 61026 240 + . . scaffold364 TRF Tandem_Repeat 61139 61288 219 + . . scaffold364 TRF Tandem_Repeat 63515 63675 121 + . . scaffold364 TRF Tandem_Repeat 63517 63712 137 + . . scaffold364 TRF Tandem_Repeat 63957 64084 85 + . . scaffold364 TRF Tandem_Repeat 64442 64574 144 + . . scaffold364 GLEAN mRNA 68654 73146 1 - . ID=CGI_10022676; scaffold364 GLEAN promoter 73147 74146 1 - . ID=CGI_10022676; scaffold364 TRF Tandem_Repeat 79654 79684 62 + . . scaffold364 TRF Tandem_Repeat 80094 80202 209 + . . scaffold364 GLEAN promoter 97664 98663 1 + . ID=CGI_10022677; scaffold364 GLEAN mRNA 98664 101723 1 + . ID=CGI_10022677; scaffold364 TRF Tandem_Repeat 99379 99409 62 + . . scaffold364 TRF Tandem_Repeat 99819 99930 188 + . . scaffold364 TRF Tandem_Repeat 99819 100041 302 + . . scaffold364 TRF Tandem_Repeat 99929 100041 208 + . . scaffold364 GLEAN promoter 101145 102144 0.530283 + . ID=CGI_10022678; scaffold364 GLEAN mRNA 102145 117693 0.530283 + . ID=CGI_10022678; scaffold364 TRF Tandem_Repeat 110274 110311 58 + . . scaffold364 TRF Tandem_Repeat 110516 111437 1375 + . . scaffold364 GLEAN promoter 117653 118652 0.999999 + . ID=CGI_10022679; scaffold364 GLEAN mRNA 118653 123699 0.999999 + . ID=CGI_10022679; scaffold364 TRF Tandem_Repeat 120878 122050 1730 + . . scaffold364 GLEAN mRNA 125875 132388 0.999971 - . ID=CGI_10022680; scaffold364 TRF Tandem_Repeat 127400 127483 73 + . . scaffold364 TRF Tandem_Repeat 128779 128862 73 + . . scaffold364 GLEAN promoter 132389 133388 0.999971 - . ID=CGI_10022680; scaffold364 GLEAN promoter 133488 134487 0.993898 + . ID=CGI_10022681; scaffold364 GLEAN mRNA 134488 139383 0.993898 + . ID=CGI_10022681; scaffold364 TRF Tandem_Repeat 135759 135813 74 + . . scaffold364 TRF Tandem_Repeat 135760 135813 90 + . . scaffold364 TRF Tandem_Repeat 135983 136675 1052 + . . scaffold364 WUBlastX DNA_TcMar-Marin 151111 151335 43 + . . scaffold364 WUBlastX DNA_TcMar-Marin 151564 151647 23 + . . scaffold364 TRF Tandem_Repeat 154685 154983 373 + . . scaffold364 GLEAN mRNA 156752 161094 0.893641 - . ID=CGI_10022682; scaffold364 GLEAN promoter 161095 162094 0.893641 - . ID=CGI_10022682; scaffold364 TRF Tandem_Repeat 163018 163060 86 + . . scaffold364 GLEAN promoter 180317 181316 0.999994 + . ID=CGI_10022683; scaffold364 GLEAN mRNA 181317 195118 0.999994 + . ID=CGI_10022683; scaffold364 WUBlastX LINE_RTE-BovB 183524 183703 89 - . . scaffold364 WUBlastX DNA_TcMar-Tc1 198788 199717 262 - . . scaffold364 WUBlastX LTR_Gypsy 202236 202604 165 - . . scaffold364 WUBlastX LTR_Gypsy 202674 203498 34 - . . scaffold364 WUBlastX LTR_Gypsy 202794 203351 221 - . . scaffold364 WUBlastX LTR_Gypsy 202794 203471 93 - . . scaffold364 WUBlastX LTR_Gypsy 203842 203952 22 - . . scaffold364 WUBlastX LTR_Gypsy 204074 204214 42 - . . scaffold364 TRF Tandem_Repeat 219772 219865 118 + . . scaffold364 TRF Tandem_Repeat 220059 220208 160 + . . scaffold364 TRF Tandem_Repeat 220287 220378 141 + . . scaffold364 GLEAN promoter 226754 227753 0.999974 + . ID=CGI_10022684; scaffold364 GLEAN mRNA 227754 228098 0.999974 + . ID=CGI_10022684; scaffold364 TRF Tandem_Repeat 229951 229995 90 + . . scaffold364 GLEAN promoter 233329 234328 1 + . ID=CGI_10022685; scaffold364 GLEAN mRNA 234329 235246 1 + . ID=CGI_10022685; scaffold364 GLEAN promoter 236962 237961 0.531613 + . ID=CGI_10022686; scaffold364 GLEAN mRNA 237962 239413 0.531613 + . ID=CGI_10022686; scaffold364 GLEAN mRNA 241899 243559 1 - . ID=CGI_10022687; scaffold364 GLEAN promoter 243560 244559 1 - . ID=CGI_10022687; scaffold364 TRF Tandem_Repeat 260920 260975 87 + . . scaffold364 GLEAN promoter 265951 266950 0.992105 + . ID=CGI_10022688; scaffold364 GLEAN mRNA 266951 278078 0.992105 + . ID=CGI_10022688; scaffold364 TRF Tandem_Repeat 272326 272373 51 + . . scaffold364 TRF Tandem_Repeat 272326 272370 72 + . . scaffold364 TRF Tandem_Repeat 276152 276194 86 + . . scaffold364 TRF Tandem_Repeat 280747 280778 64 + . . scaffold364 GLEAN mRNA 307244 318990 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Zator 308971 309138 54 - . . scaffold364 WUBlastX DNA_Zator 309609 309788 57 - . . scaffold364 WUBlastX DNA_Zator 309939 312758 1396 - . . scaffold364 GLEAN promoter 318991 319990 0.924605 - . ID=CGI_10022689; scaffold364 WUBlastX DNA_Maverick 319090 319740 299 - . . scaffold364 GLEAN promoter 319438 320437 0.999557 + . ID=CGI_10022690; scaffold364 WUBlastX LINE_RTE-X 319726 319959 47 + . . scaffold364 WUBlastX DNA_Maverick 319949 320146 105 + . . scaffold364 GLEAN mRNA 320438 320803 0.999557 + . ID=CGI_10022690; scaffold364 TRF Tandem_Repeat 324325 325238 1065 + . . scaffold364 TRF Tandem_Repeat 341602 341694 159 + . . scaffold364 TRF Tandem_Repeat 343684 343757 93 + . . scaffold364 WUBlastX DNA_MuDR 345000 345080 25 - . . scaffold364 WUBlastX DNA_MuDR 345205 345411 35 - . . scaffold364 WUBlastX DNA_MuDR 345259 345432 91 - . . scaffold364 WUBlastX DNA_MuDR 345262 345474 74 - . . scaffold364 WUBlastX DNA_MuDR 345283 345546 67 - . . scaffold364 WUBlastX DNA_MuDR 345604 345843 47 - . . scaffold364 WUBlastX DNA_MuDR 345703 345870 70 - . . scaffold364 WUBlastX DNA_MuDR 345712 345948 31 - . . scaffold364 GLEAN mRNA 346124 348214 0.942937 - . ID=CGI_10022691; scaffold364 GLEAN promoter 348215 349214 0.942937 - . ID=CGI_10022691; scaffold364 GLEAN promoter 353713 354712 0.333666 + . ID=CGI_10022692; scaffold364 GLEAN mRNA 354713 358226 0.333666 + . ID=CGI_10022692; scaffold364 WUBlastX DNA_Crypton 354782 355231 68 + . . scaffold364 WUBlastX DNA_Zator 364590 364973 77 - . . scaffold364 WUBlastX DNA_Zator 365039 366205 239 - . . scaffold364 WUBlastX DNA_hAT-Ac 367203 367454 36 + . . scaffold364 WUBlastX DNA_hAT-Ac 367251 367463 49 + . . scaffold364 WUBlastX DNA_hAT-Ac 367293 367457 63 + . . scaffold364 WUBlastX DNA_hAT-Ac 367381 367608 42 + . . scaffold364 TRF Tandem_Repeat 371061 371446 223 + . . scaffold364 TRF Tandem_Repeat 371062 371445 217 + . . scaffold364 TRF Tandem_Repeat 371106 371448 221 + . . scaffold364 TRF Tandem_Repeat 372253 372628 262 + . . scaffold364 TRF Tandem_Repeat 372266 372630 226 + . . scaffold364 TRF Tandem_Repeat 372289 372632 211 + . . scaffold364 WUBlastX DNA_Harbinger 372867 373019 44 - . . scaffold364 WUBlastX DNA_Harbinger 373021 373128 47 - . . scaffold364 WUBlastX DNA_Harbinger 373307 373495 53 - . . scaffold364 GLEAN promoter 376004 377003 1 + . ID=CGI_10022693; scaffold364 GLEAN mRNA 377004 378653 1 + . ID=CGI_10022693; scaffold364 TRF Tandem_Repeat 403494 403544 93 + . . scaffold364 TRF Tandem_Repeat 408282 408322 82 + . . scaffold364 WUBlastX LINE_L1-Tx1 408556 410238 534 - . . scaffold364 WUBlastX DNA_hAT-Tip100 411036 412295 546 - . . scaffold364 WUBlastX DNA_hAT-Tip100 412298 412885 279 - . . scaffold364 WUBlastX DNA_hAT-Tip100 412894 413154 69 - . . scaffold364 WUBlastX LINE_L1 413928 414212 66 - . . scaffold364 WUBlastX LINE_L1 414003 414194 75 - . . scaffold364 WUBlastX LINE_L1-Tx1 414042 414218 125 - . . scaffold364 WUBlastX LINE_L1 414051 414248 75 - . . scaffold364 TRF Tandem_Repeat 417496 417542 94 + . . scaffold364 TRF Tandem_Repeat 418025 418077 106 + . . scaffold364 GLEAN mRNA 424265 440356 0.999009 - . ID=CGI_10022694; scaffold364 TRF Tandem_Repeat 429207 429249 86 + . . scaffold364 TRF Tandem_Repeat 436652 436899 460 + . . scaffold364 GLEAN promoter 440357 441356 0.999009 - . ID=CGI_10022694; scaffold364 GLEAN mRNA 441079 455316 0.504908 - . ID=CGI_10022695; scaffold364 TRF Tandem_Repeat 443986 444035 100 + . . scaffold364 GLEAN promoter 455317 456316 0.504908 - . ID=CGI_10022695; scaffold364 TRF Tandem_Repeat 459042 459092 84 + . . scaffold364 GLEAN mRNA 459138 465866 0.999675 - . ID=CGI_10022696; scaffold364 GLEAN promoter 465088 466087 1 + . ID=CGI_10022697; scaffold364 GLEAN promoter 465867 466866 0.999675 - . ID=CGI_10022696; scaffold364 GLEAN mRNA 466088 475605 1 + . ID=CGI_10022697; scaffold364 TRF Tandem_Repeat 474412 474474 112 + . . scaffold364 GLEAN promoter 477320 478319 0.999798 + . ID=CGI_10022698; scaffold364 GLEAN mRNA 478320 489261 0.999798 + . ID=CGI_10022698; scaffold364 GLEAN mRNA 492619 512143 0.650063 - . ID=CGI_10022699; scaffold364 GLEAN promoter 512144 513143 0.650063 - . ID=CGI_10022699; scaffold364 GLEAN promoter 514363 515362 1 + . ID=CGI_10022700; scaffold364 TRF Tandem_Repeat 514432 514501 72 + . . scaffold364 GLEAN mRNA 515363 515533 1 + . ID=CGI_10022700; scaffold364 GLEAN mRNA 517297 521880 1 - . ID=CGI_10022701; scaffold364 TRF Tandem_Repeat 518654 519262 789 + . . scaffold364 GLEAN promoter 520587 521586 0.999675 + . ID=CGI_10022702; scaffold364 GLEAN mRNA 521587 537188 0.999675 + . ID=CGI_10022702; scaffold364 GLEAN promoter 521881 522880 1 - . ID=CGI_10022701; scaffold364 GLEAN mRNA 539796 598969 0.907038 - . ID=CGI_10022703; scaffold364 TRF Tandem_Repeat 546584 546621 67 + . . scaffold364 TRF Tandem_Repeat 554426 554521 185 + . . scaffold364 GLEAN promoter 598970 599969 0.907038 - . ID=CGI_10022703; scaffold364 GLEAN mRNA 602147 609137 0.652727 - . ID=CGI_10022704; scaffold364 GLEAN promoter 609138 610137 0.652727 - . ID=CGI_10022704; scaffold364 TRF Tandem_Repeat 611906 611957 104 + . . scaffold364 GLEAN promoter 611950 612949 0.982473 + . ID=CGI_10022705; scaffold364 GLEAN mRNA 612950 615135 0.982473 + . ID=CGI_10022705; scaffold364 TRF Tandem_Repeat 615049 615098 73 + . . scaffold364 TRF Tandem_Repeat 620407 620501 144 + . . scaffold364 TRF Tandem_Repeat 620407 620501 144 + . . scaffold364 TRF Tandem_Repeat 621537 621698 99 + . . scaffold364 TRF Tandem_Repeat 621558 621697 187 + . . scaffold364 TRF Tandem_Repeat 622153 622227 150 + . . scaffold364 GLEAN promoter 622707 623706 0.982473 + . ID=CGI_10022706; scaffold364 GLEAN mRNA 623707 625015 0.982473 + . ID=CGI_10022706; scaffold364 GLEAN promoter 626770 627769 0.992477 + . ID=CGI_10022707; scaffold364 GLEAN mRNA 627770 639775 0.992477 + . ID=CGI_10022707; scaffold364 WUBlastX LTR_Gypsy-Cigr 640542 641165 93 - . . scaffold364 WUBlastX LTR_Gypsy-Cigr 640599 641111 148 - . . scaffold364 WUBlastX LTR_Gypsy 640629 641348 33 - . . scaffold364 WUBlastX LTR_Gypsy 640926 641234 60 - . . scaffold364 WUBlastX LTR_Gypsy-Cigr 641471 641941 113 - . . scaffold364 WUBlastX LTR_Gypsy-Cigr 641544 641744 156 - . . scaffold364 WUBlastX LTR_Gypsy 641544 642140 125 - . . scaffold364 GLEAN promoter 648685 649684 1 + . ID=CGI_10022708; scaffold364 GLEAN mRNA 649685 652471 1 + . ID=CGI_10022708; scaffold364 TRF Tandem_Repeat 649839 650560 1047 + . . scaffold364 GLEAN promoter 652741 653740 0.989724 + . ID=CGI_10022709; scaffold364 GLEAN mRNA 653741 663138 0.989724 + . ID=CGI_10022709; scaffold364 WUBlastX DNA_Sola 671166 671522 74 + . . scaffold364 TRF Tandem_Repeat 675512 676150 709 + . . scaffold364 TRF Tandem_Repeat 686043 686796 1063 + . . scaffold364 TRF Tandem_Repeat 696469 696496 56 + . . scaffold364 TRF Tandem_Repeat 698251 698505 429 + . . scaffold364 WUBlastX LINE_L1 705734 706492 172 + . . scaffold364 WUBlastX LINE_L1-Tx1 705923 706621 141 + . . scaffold364 WUBlastX LINE_RTE-X 706746 706961 26 + . . scaffold364 WUBlastX LINE_RTE-X 706912 707100 51 + . . scaffold364 WUBlastX LINE_RTE-X 706960 707100 80 + . . scaffold364 WUBlastX LINE_RTE-X 706960 707133 80 + . . scaffold364 WUBlastX LINE_RTE-X 707133 707621 135 + . . scaffold364 WUBlastX LINE_RTE-X 707145 707546 141 + . . scaffold364 WUBlastX LINE_RTE-X 707537 707932 59 + . . scaffold364 WUBlastX LINE_RTE-X 707546 707713 82 + . . scaffold364 WUBlastX LINE_RTE-X 707552 708019 50 + . . scaffold364 WUBlastX LINE_RTE-X 708612 708857 64 + . . scaffold364 WUBlastX LINE_RTE-X 708612 708941 37 + . . scaffold364 WUBlastX LINE_RTE-X 708627 708749 67 + . . scaffold364 TRF Tandem_Repeat 712945 712974 60 + . . scaffold364 TRF Tandem_Repeat 713989 714019 53 + . . scaffold364 WUBlastX DNA_Crypton 715258 715635 69 - . . scaffold364 GLEAN mRNA 715375 716114 0.276063 - . ID=CGI_10022710; scaffold364 GLEAN promoter 716115 717114 0.276063 - . ID=CGI_10022710; scaffold364 WUBlastX DNA_Crypton 716190 716417 21 - . . scaffold364 GLEAN mRNA 716389 716769 1 - . ID=CGI_10022711; scaffold364 WUBlastX DNA_Crypton 716410 716484 28 - . . scaffold364 GLEAN promoter 716770 717769 1 - . ID=CGI_10022711; scaffold364 WUBlastX DNA_hAT-Tip100 735456 736196 136 + . . scaffold364 WUBlastX DNA_hAT-Tip100 735603 736280 175 + . . scaffold364 WUBlastX DNA_hAT-Tip100 735651 737207 132 + . . scaffold364 WUBlastX DNA_hAT-Tip100 736199 736522 192 + . . scaffold364 WUBlastX DNA_hAT-Tip100 737215 737487 72 + . . scaffold364 WUBlastX DNA_hAT-Tip100 737465 737701 77 + . . scaffold364 WUBlastX DNA_hAT-Tip100 737492 737740 42 + . . scaffold364 TRF Tandem_Repeat 740770 740883 115 + . . scaffold364 TRF Tandem_Repeat 744597 745429 1332 + . . scaffold364 TRF Tandem_Repeat 753668 753730 60 + . . scaffold364 TRF Tandem_Repeat 753668 753730 60 + . . scaffold364 WUBlastX LTR_Gypsy-Cigr 758412 758705 57 + . . scaffold364 TRF Tandem_Repeat 761261 761311 102 + . . scaffold364 TRF Tandem_Repeat 767865 767915 72 + . . scaffold364 TRF Tandem_Repeat 769686 769715 60 + . . scaffold364 GLEAN mRNA 769958 780320 0.703201 - . ID=CGI_10022712; scaffold364 TRF Tandem_Repeat 774048 775084 1570 + . . scaffold364 TRF Tandem_Repeat 775246 775310 96 + . . scaffold364 TRF Tandem_Repeat 775249 775311 74 + . . scaffold364 TRF Tandem_Repeat 778126 778189 74 + . . scaffold364 TRF Tandem_Repeat 778127 778189 54 + . . scaffold364 GLEAN promoter 780321 781320 0.703201 - . ID=CGI_10022712; scaffold364 TRF Tandem_Repeat 780917 780973 87 + . . scaffold36406 GLEAN mRNA 2722 18929 0.840736 - . ID=CGI_10001890; scaffold36406 GLEAN promoter 18930 19929 0.840736 - . ID=CGI_10001890; scaffold36406 GLEAN mRNA 19284 31016 0.702385 - . ID=CGI_10001891; scaffold36406 GLEAN promoter 31017 32016 0.702385 - . ID=CGI_10001891; scaffold36410 GLEAN mRNA 4689 21980 0.354487 - . ID=CGI_10001887; scaffold36410 WUBlastX DNA_Harbinger 5596 5775 55 + . . scaffold36410 WUBlastX DNA_Harbinger 5617 5808 26 + . . scaffold36410 WUBlastX DNA_Harbinger 6368 6724 147 + . . scaffold36410 TRF Tandem_Repeat 11598 11628 62 + . . scaffold36410 WUBlastX RC_Helitron 13955 14221 93 + . . scaffold36410 WUBlastX RC_Helitron 14880 15173 75 + . . scaffold36410 TRF Tandem_Repeat 17827 18026 95 + . . scaffold36410 GLEAN promoter 21981 22980 0.354487 - . ID=CGI_10001887; scaffold36410 WUBlastX DNA_NOF 22075 22329 39 + . . scaffold36410 TRF Tandem_Repeat 22649 22682 68 + . . scaffold36410 TRF Tandem_Repeat 25943 25992 57 + . . scaffold36410 TRF Tandem_Repeat 26370 26402 66 + . . scaffold36410 TRF Tandem_Repeat 27498 27589 123 + . . scaffold36410 TRF Tandem_Repeat 27772 27826 65 + . . scaffold36410 TRF Tandem_Repeat 27775 27830 71 + . . scaffold36410 TRF Tandem_Repeat 31518 31556 78 + . . scaffold36410 GLEAN mRNA 32975 34333 0.558343 - . ID=CGI_10001888; scaffold36410 GLEAN promoter 34334 34475 0.558343 - . ID=CGI_10001888; scaffold36420 TRF Tandem_Repeat 1261 1504 398 + . . scaffold36420 WUBlastX LINE_RTE-X 9673 10029 99 + . . scaffold36420 GLEAN promoter 24878 25877 0.835531 + . ID=CGI_10001889; scaffold36420 GLEAN mRNA 25878 32161 0.835531 + . ID=CGI_10001889; scaffold36420 WUBlastX LINE_L2 28826 29071 62 - . . scaffold36426 WUBlastX LTR_Gypsy-Troyk 70 219 48 - . . scaffold36426 WUBlastX LTR_Gypsy-Troyk 248 433 46 - . . scaffold36426 TRF Tandem_Repeat 3748 3779 55 + . . scaffold36426 TRF Tandem_Repeat 3891 4657 1053 + . . scaffold36426 TRF Tandem_Repeat 5568 5817 92 + . . scaffold36426 TRF Tandem_Repeat 7793 7886 75 + . . scaffold36426 TRF Tandem_Repeat 10994 11116 131 + . . scaffold36426 TRF Tandem_Repeat 11301 11471 107 + . . scaffold36426 TRF Tandem_Repeat 11322 11506 115 + . . scaffold36426 TRF Tandem_Repeat 29758 29810 67 + . . scaffold36432 GLEAN promoter 8606 9605 0.99037 + . ID=CGI_10001913; scaffold36432 GLEAN mRNA 9606 33227 0.99037 + . ID=CGI_10001913; scaffold36450 WUBlastX LINE_L1 68 502 28 - . . scaffold36450 WUBlastX LINE_L1-Tx1 194 454 86 - . . scaffold36450 WUBlastX LINE_L1 272 505 42 - . . scaffold36450 WUBlastX LINE_L1-Tx1 1157 1291 25 - . . scaffold36450 WUBlastX LINE_L1 1828 2529 158 - . . scaffold36450 WUBlastX LINE_L1-Tx1 2098 2526 226 - . . scaffold36450 WUBlastX LINE_L1-Tx1 2537 3190 502 - . . scaffold36450 WUBlastX LINE_L1 2540 3355 205 - . . scaffold36450 GLEAN promoter 2992 3991 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX LINE_L1 3190 3447 97 - . . scaffold36450 WUBlastX LINE_L1 3190 3498 78 - . . scaffold36450 WUBlastX LINE_L1 3202 3642 44 - . . scaffold36450 WUBlastX LINE_RTE-BovB 3810 3860 21 - . . scaffold36450 GLEAN mRNA 3992 12302 0.990019 + . ID=CGI_10001979; scaffold36450 WUBlastX RC_Helitron 4151 4417 37 + . . scaffold36450 WUBlastX RC_Helitron 4220 4444 52 + . . scaffold36450 WUBlastX RC_Helitron 4845 5942 31 + . . scaffold36450 WUBlastX RC_Helitron 5148 6428 63 + . . scaffold36450 WUBlastX RC_Helitron 5403 6947 200 + . . scaffold36450 WUBlastX RC_Helitron 5703 6929 278 + . . scaffold36450 WUBlastX RC_Helitron 5874 8036 239 + . . scaffold36450 WUBlastX RC_Helitron 5928 6956 342 + . . scaffold36450 WUBlastX RC_Helitron 6972 8228 176 + . . scaffold36450 WUBlastX RC_Helitron 8282 9427 505 + . . scaffold36450 GLEAN mRNA 18407 33594 0.503687 - . ID=CGI_10001980; scaffold36450 WUBlastX LINE_L2 21056 21697 92 - . . scaffold36450 WUBlastX LINE_CR1-L2 21416 21802 44 - . . scaffold36450 WUBlastX LTR_Ngaro 21836 22435 366 + . . scaffold36450 GLEAN promoter 33595 34594 0.503687 - . ID=CGI_10001980; scaffold36452 GLEAN promoter 1 837 0.999372 + . ID=CGI_10001910; scaffold36452 TRF Tandem_Repeat 3 32 60 + . . scaffold36452 TRF Tandem_Repeat 212 261 57 + . . scaffold36452 GLEAN promoter 405 1404 0.481188 + . ID=CGI_10001911; scaffold36452 TRF Tandem_Repeat 545 570 52 + . . scaffold36452 GLEAN mRNA 838 1335 0.999372 + . ID=CGI_10001910; scaffold36452 GLEAN mRNA 1405 2499 0.481188 + . ID=CGI_10001911; scaffold36452 TRF Tandem_Repeat 4451 4505 85 + . . scaffold36452 TRF Tandem_Repeat 21201 21388 195 + . . scaffold36452 TRF Tandem_Repeat 22519 22544 52 + . . scaffold36452 TRF Tandem_Repeat 29469 29508 55 + . . scaffold36452 TRF Tandem_Repeat 30985 31018 59 + . . scaffold36452 TRF Tandem_Repeat 30996 31038 52 + . . scaffold36452 GLEAN promoter 31159 32158 0.999372 + . ID=CGI_10001912; scaffold36452 GLEAN mRNA 32159 32389 0.999372 + . ID=CGI_10001912; scaffold36452 WUBlastX LTR_Pao 32480 32785 20 + . . scaffold36452 TRF Tandem_Repeat 32834 32858 50 + . . scaffold36452 WUBlastX LTR_Pao 32947 34530 769 + . . scaffold36462 TRF Tandem_Repeat 1739 1785 55 + . . scaffold36462 GLEAN promoter 2775 3774 0.999855 + . ID=CGI_10001928; scaffold36462 GLEAN mRNA 3775 10408 0.999855 + . ID=CGI_10001928; scaffold36462 TRF Tandem_Repeat 5960 6015 96 + . . scaffold36462 GLEAN mRNA 15214 26775 0.999351 - . ID=CGI_10001929; scaffold36462 WUBlastX LINE_RTE-X 19543 20247 148 - . . scaffold36462 WUBlastX LINE_RTE-X 20265 20480 49 - . . scaffold36462 WUBlastX LINE_RTE-X 20268 20450 127 - . . scaffold36462 WUBlastX LINE_RTE-X 20713 20754 23 - . . scaffold36462 TRF Tandem_Repeat 24506 24570 121 + . . scaffold36462 GLEAN promoter 26776 27775 0.999351 - . ID=CGI_10001929; scaffold36462 GLEAN mRNA 28109 34499 1 - . ID=CGI_10001930; scaffold36462 TRF Tandem_Repeat 33127 33192 132 + . . scaffold36462 GLEAN promoter 34500 35056 1 - . ID=CGI_10001930; scaffold36466 GLEAN promoter 1 554 0.776794 + . ID=CGI_10001940; scaffold36466 GLEAN mRNA 555 34583 0.776794 + . ID=CGI_10001940; scaffold36470 GLEAN promoter 1 442 0.618186 + . ID=CGI_10001941; scaffold36470 GLEAN mRNA 443 658 0.618186 + . ID=CGI_10001941; scaffold36470 GLEAN mRNA 581 13899 0.99951 - . ID=CGI_10001942; scaffold36470 GLEAN promoter 13900 14899 0.99951 - . ID=CGI_10001942; scaffold36470 GLEAN mRNA 29289 33167 0.999999 - . ID=CGI_10001943; scaffold36470 GLEAN promoter 33168 34167 0.999999 - . ID=CGI_10001943; scaffold36474 GLEAN promoter 6690 7689 1 + . ID=CGI_10001933; scaffold36474 GLEAN mRNA 7690 9891 1 + . ID=CGI_10001933; scaffold36474 GLEAN mRNA 11121 25021 0.999947 - . ID=CGI_10001934; scaffold36474 GLEAN promoter 17579 18578 1 + . ID=CGI_10001935; scaffold36474 GLEAN mRNA 18579 20002 1 + . ID=CGI_10001935; scaffold36474 GLEAN promoter 24746 25745 1 + . ID=CGI_10001936; scaffold36474 GLEAN promoter 25022 26021 0.999947 - . ID=CGI_10001934; scaffold36474 GLEAN mRNA 25746 30650 1 + . ID=CGI_10001936; scaffold36476 TRF Tandem_Repeat 600 653 108 + . . scaffold36476 TRF Tandem_Repeat 7057 7108 50 + . . scaffold36476 TRF Tandem_Repeat 17254 17290 74 + . . scaffold36476 TRF Tandem_Repeat 18878 18968 166 + . . scaffold36476 TRF Tandem_Repeat 18968 18993 52 + . . scaffold36476 GLEAN promoter 19236 20235 0.999997 + . ID=CGI_10001970; scaffold36476 GLEAN mRNA 20236 22212 0.999997 + . ID=CGI_10001970; scaffold36476 WUBlastX DNA_TcMar-m44 23413 24021 328 + . . scaffold36476 WUBlastX DNA_TcMar-m44 24018 24299 157 + . . scaffold36478 GLEAN promoter 1 118 0.999375 + . ID=CGI_10001944; scaffold36478 GLEAN mRNA 119 1555 0.999375 + . ID=CGI_10001944; scaffold36478 GLEAN promoter 660 1659 1 + . ID=CGI_10001945; scaffold36478 GLEAN mRNA 1660 3030 1 + . ID=CGI_10001945; scaffold36478 GLEAN promoter 2085 3084 0.449004 + . ID=CGI_10001946; scaffold36478 GLEAN mRNA 3085 4479 0.449004 + . ID=CGI_10001946; scaffold36478 GLEAN promoter 5235 6234 1 + . ID=CGI_10001948; scaffold36478 GLEAN mRNA 6235 7515 1 + . ID=CGI_10001948; scaffold36478 GLEAN promoter 6593 7592 0.999661 + . ID=CGI_10001949; scaffold36478 GLEAN mRNA 7593 8732 0.999661 + . ID=CGI_10001949; scaffold36478 GLEAN promoter 9903 10902 0.999984 + . ID=CGI_10001952; scaffold36478 GLEAN mRNA 10903 11751 0.999984 + . ID=CGI_10001952; scaffold36478 GLEAN mRNA 11860 13654 0.999565 - . ID=CGI_10001953; scaffold36478 GLEAN promoter 13655 14654 0.999565 - . ID=CGI_10001953; scaffold36478 GLEAN promoter 16015 17014 0.995236 + . ID=CGI_10001955; scaffold36478 GLEAN mRNA 16946 17218 0.481188 - . ID=CGI_10001954; scaffold36478 GLEAN mRNA 17015 17656 0.995236 + . ID=CGI_10001955; scaffold36478 GLEAN promoter 17219 18218 0.481188 - . ID=CGI_10001954; scaffold36478 GLEAN promoter 17351 18350 0.996819 + . ID=CGI_10001957; scaffold36478 GLEAN mRNA 18351 20204 0.996819 + . ID=CGI_10001957; scaffold36478 GLEAN promoter 21804 22803 0.998713 + . ID=CGI_10001959; scaffold36478 GLEAN mRNA 22804 23859 0.998713 + . ID=CGI_10001959; scaffold36478 GLEAN promoter 22865 23864 0.999055 + . ID=CGI_10001960; scaffold36478 GLEAN promoter 23311 24310 0.998388 + . ID=CGI_10001961; scaffold36478 GLEAN mRNA 23865 24308 0.999055 + . ID=CGI_10001960; scaffold36478 GLEAN mRNA 24311 26473 0.998388 + . ID=CGI_10001961; scaffold36478 GLEAN promoter 25566 26565 0.557842 + . ID=CGI_10001962; scaffold36478 GLEAN mRNA 26566 27405 0.557842 + . ID=CGI_10001962; scaffold36478 GLEAN promoter 27076 28075 0.55839 + . ID=CGI_10001964; scaffold36478 GLEAN mRNA 28076 29110 0.55839 + . ID=CGI_10001964; scaffold36478 GLEAN promoter 28250 29249 0.720642 + . ID=CGI_10001965; scaffold36478 GLEAN mRNA 29250 31059 0.720642 + . ID=CGI_10001965; scaffold36478 GLEAN promoter 30649 31648 0.999995 + . ID=CGI_10001967; scaffold36478 GLEAN mRNA 31649 32770 0.999995 + . ID=CGI_10001967; scaffold36478 GLEAN promoter 31773 32772 0.999981 + . ID=CGI_10001968; scaffold36478 GLEAN mRNA 32773 33738 0.999981 + . ID=CGI_10001968; scaffold36482 TRF Tandem_Repeat 2562 2606 54 + . . scaffold36482 TRF Tandem_Repeat 2668 2695 56 + . . scaffold36482 WUBlastX LINE_CR1-L2 5512 5712 113 + . . scaffold36482 TRF Tandem_Repeat 5781 5805 50 + . . scaffold36482 WUBlastX LINE_CR1-L2 6155 6265 35 + . . scaffold36482 TRF Tandem_Repeat 7602 8119 766 + . . scaffold36482 TRF Tandem_Repeat 7602 8119 775 + . . scaffold36482 TRF Tandem_Repeat 11031 11206 112 + . . scaffold36482 TRF Tandem_Repeat 11031 11206 112 + . . scaffold36482 TRF Tandem_Repeat 11031 11206 112 + . . scaffold36482 TRF Tandem_Repeat 12768 12828 122 + . . scaffold36482 WUBlastX LINE_Penelope 32335 32610 130 + . . scaffold36482 WUBlastX LINE_Penelope 32344 32706 30 + . . scaffold36482 WUBlastX LINE_Penelope 33648 34439 189 + . . scaffold36482 WUBlastX LINE_Penelope 34493 34678 30 + . . scaffold36482 WUBlastX LINE_Penelope 34529 34666 58 + . . scaffold36482 WUBlastX LINE_Penelope 34532 34690 48 + . . scaffold36482 TRF Tandem_Repeat 34717 34783 80 + . . scaffold36490 GLEAN promoter 8327 9326 0.887033 + . ID=CGI_10001974; scaffold36490 GLEAN mRNA 9327 10890 0.887033 + . ID=CGI_10001974; scaffold36490 GLEAN mRNA 14058 20058 1 - . ID=CGI_10001975; scaffold36490 GLEAN promoter 20059 21058 1 - . ID=CGI_10001975; scaffold36490 GLEAN mRNA 23437 24954 1 - . ID=CGI_10001976; scaffold36490 GLEAN promoter 24955 25954 1 - . ID=CGI_10001976; scaffold36490 GLEAN mRNA 26158 26634 0.558302 - . ID=CGI_10001977; scaffold36490 GLEAN promoter 26635 27634 0.558302 - . ID=CGI_10001977; scaffold36490 GLEAN mRNA 28521 33814 0.999938 - . ID=CGI_10001978; scaffold36490 GLEAN promoter 33815 34814 0.999938 - . ID=CGI_10001978; scaffold36494 WUBlastX LINE_L2 6 275 100 - . . scaffold36494 WUBlastX LINE_CR1-L2 393 428 20 - . . scaffold36494 WUBlastX LINE_L2 1026 1577 125 - . . scaffold36494 WUBlastX LINE_CR1-L2 1113 1691 131 - . . scaffold36494 TRF Tandem_Repeat 2998 3032 70 + . . scaffold36494 TRF Tandem_Repeat 5521 5573 97 + . . scaffold36494 TRF Tandem_Repeat 10060 10148 124 + . . scaffold36494 TRF Tandem_Repeat 10060 10148 124 + . . scaffold36494 TRF Tandem_Repeat 10686 10733 87 + . . scaffold36494 WUBlastX DNA_Sola 13342 13524 74 + . . scaffold36494 WUBlastX DNA_Crypton 14079 14297 66 - . . scaffold36494 TRF Tandem_Repeat 19291 19320 60 + . . scaffold36494 GLEAN mRNA 20559 22368 0.911505 - . ID=CGI_10001972; scaffold36494 GLEAN promoter 22369 23368 0.911505 - . ID=CGI_10001972; scaffold36494 TRF Tandem_Repeat 24832 24889 100 + . . scaffold36494 TRF Tandem_Repeat 24833 24886 65 + . . scaffold36494 TRF Tandem_Repeat 31497 31748 468 + . . scaffold365 TRF Tandem_Repeat 14 126 93 + . . scaffold365 TRF Tandem_Repeat 264 413 201 + . . scaffold365 TRF Tandem_Repeat 24895 25794 1286 + . . scaffold365 TRF Tandem_Repeat 27112 27268 158 + . . scaffold365 TRF Tandem_Repeat 27152 27268 144 + . . scaffold365 TRF Tandem_Repeat 27721 27970 304 + . . scaffold365 TRF Tandem_Repeat 29832 30151 175 + . . scaffold365 TRF Tandem_Repeat 30236 30708 461 + . . scaffold365 TRF Tandem_Repeat 30250 30739 485 + . . scaffold365 TRF Tandem_Repeat 30585 31141 785 + . . scaffold365 TRF Tandem_Repeat 31388 31647 241 + . . scaffold365 GLEAN promoter 33345 34344 0.992791 + . ID=CGI_10022713; scaffold365 GLEAN mRNA 34345 57460 0.992791 + . ID=CGI_10022713; scaffold365 TRF Tandem_Repeat 36353 36419 82 + . . scaffold365 TRF Tandem_Repeat 36353 36411 84 + . . scaffold365 TRF Tandem_Repeat 36354 36419 71 + . . scaffold365 TRF Tandem_Repeat 44378 44432 110 + . . scaffold365 GLEAN mRNA 48084 51312 0.67908 - . ID=CGI_10022714; scaffold365 GLEAN promoter 51313 52312 0.67908 - . ID=CGI_10022714; scaffold365 TRF Tandem_Repeat 52341 52370 60 + . . scaffold365 TRF Tandem_Repeat 52374 52410 74 + . . scaffold365 TRF Tandem_Repeat 59057 59143 104 + . . scaffold365 TRF Tandem_Repeat 59221 59363 162 + . . scaffold365 TRF Tandem_Repeat 59223 59454 141 + . . scaffold365 TRF Tandem_Repeat 59223 59452 210 + . . scaffold365 TRF Tandem_Repeat 59455 59631 156 + . . scaffold365 GLEAN mRNA 62776 65912 0.999351 - . ID=CGI_10022715; scaffold365 TRF Tandem_Repeat 65168 65217 100 + . . scaffold365 GLEAN promoter 65913 66912 0.999351 - . ID=CGI_10022715; scaffold365 TRF Tandem_Repeat 66937 67209 339 + . . scaffold365 GLEAN mRNA 67859 69523 1 - . ID=CGI_10022716; scaffold365 GLEAN promoter 69524 70523 1 - . ID=CGI_10022716; scaffold365 GLEAN mRNA 73185 73658 0.978086 - . ID=CGI_10022717; scaffold365 GLEAN promoter 73659 74658 0.978086 - . ID=CGI_10022717; scaffold365 GLEAN mRNA 78147 85364 0.919357 - . ID=CGI_10022718; scaffold365 WUBlastX DNA_Merlin 80320 80490 63 + . . scaffold365 TRF Tandem_Repeat 80874 81715 1108 + . . scaffold365 TRF Tandem_Repeat 81897 81941 54 + . . scaffold365 GLEAN promoter 85365 86364 0.919357 - . ID=CGI_10022718; scaffold365 GLEAN mRNA 88351 92507 0.816232 - . ID=CGI_10022719; scaffold365 TRF Tandem_Repeat 91379 91475 126 + . . scaffold365 GLEAN promoter 92508 93507 0.816232 - . ID=CGI_10022719; scaffold365 GLEAN mRNA 92824 98347 0.399345 - . ID=CGI_10022720; scaffold365 TRF Tandem_Repeat 94573 95321 866 + . . scaffold365 TRF Tandem_Repeat 96778 96811 59 + . . scaffold365 GLEAN promoter 98348 99347 0.399345 - . ID=CGI_10022720; scaffold365 GLEAN mRNA 98713 162231 0.37257 - . ID=CGI_10022721; scaffold365 TRF Tandem_Repeat 100747 101727 738 + . . scaffold365 TRF Tandem_Repeat 109587 109830 194 + . . scaffold365 TRF Tandem_Repeat 137135 137205 61 + . . scaffold365 TRF Tandem_Repeat 140318 140533 166 + . . scaffold365 GLEAN promoter 162232 163231 0.37257 - . ID=CGI_10022721; scaffold365 GLEAN mRNA 162342 187868 0.996603 - . ID=CGI_10022722; scaffold365 WUBlastX LINE_RTE-X 170013 170150 31 - . . scaffold365 TRF Tandem_Repeat 179883 179962 108 + . . scaffold365 WUBlastX LINE_RTE-X 186591 187103 57 - . . scaffold365 WUBlastX LINE_RTE-X 186609 186935 101 - . . scaffold365 WUBlastX LINE_RTE-X 186678 187031 94 - . . scaffold365 GLEAN promoter 187869 188868 0.996603 - . ID=CGI_10022722; scaffold365 TRF Tandem_Repeat 190395 191602 1814 + . . scaffold365 GLEAN mRNA 195040 198132 1 - . ID=CGI_10022723; scaffold365 TRF Tandem_Repeat 195296 195725 618 + . . scaffold365 GLEAN promoter 198133 199132 1 - . ID=CGI_10022723; scaffold365 TRF Tandem_Repeat 204461 204497 74 + . . scaffold365 WUBlastX LINE_Penelope 206759 207973 770 - . . scaffold365 WUBlastX LINE_Penelope 207972 208625 35 - . . scaffold365 WUBlastX LINE_Penelope 207972 208145 49 - . . scaffold365 WUBlastX LINE_RTE-X 215690 216058 50 + . . scaffold365 WUBlastX LINE_RTE-X 215747 216061 68 + . . scaffold365 WUBlastX LTR_Gypsy 223406 224317 244 + . . scaffold365 WUBlastX LTR_Gypsy 224264 224383 21 + . . scaffold365 WUBlastX LTR_Gypsy 224613 225200 88 + . . scaffold365 WUBlastX LTR_Gypsy 224736 225551 273 + . . scaffold365 WUBlastX LTR_Gypsy 225199 227127 1219 + . . scaffold365 WUBlastX LTR_Gypsy 226222 227316 396 + . . scaffold365 WUBlastX LTR_Gypsy 227328 227435 23 + . . scaffold365 WUBlastX LTR_Gypsy 227367 227813 162 + . . scaffold365 WUBlastX LTR_Gypsy 227436 227813 188 + . . scaffold365 WUBlastX LTR_Gypsy 227496 227792 239 + . . scaffold365 WUBlastX LTR_Gypsy 227496 227855 201 + . . scaffold365 WUBlastX LTR_Pao 233761 233868 20 - . . scaffold365 WUBlastX LTR_Pao 233808 234341 23 - . . scaffold365 WUBlastX LTR_Pao 233922 234338 81 - . . scaffold365 WUBlastX LTR_Pao 234003 234341 159 - . . scaffold365 WUBlastX LTR_Pao 234152 235021 172 - . . scaffold365 WUBlastX LTR_Pao 234320 235012 297 - . . scaffold365 WUBlastX LTR_Pao 234586 235167 273 - . . scaffold365 WUBlastX LTR_Pao 235018 235227 50 - . . scaffold365 WUBlastX LTR_Pao 235209 236324 930 - . . scaffold365 WUBlastX LTR_Pao 236344 236463 53 - . . scaffold365 WUBlastX LTR_Pao 236350 236523 50 - . . scaffold365 TRF Tandem_Repeat 237428 237480 106 + . . scaffold365 GLEAN promoter 241840 242839 0.709643 + . ID=CGI_10022724; scaffold365 GLEAN mRNA 242840 287483 0.709643 + . ID=CGI_10022724; scaffold365 TRF Tandem_Repeat 246671 246719 80 + . . scaffold365 WUBlastX LTR_Pao 248415 248756 60 + . . scaffold365 WUBlastX LTR_Pao 248785 250491 265 + . . scaffold365 WUBlastX LTR_Pao 250496 250693 118 + . . scaffold365 TRF Tandem_Repeat 250956 251787 680 + . . scaffold365 WUBlastX LTR_Pao 251830 251889 28 + . . scaffold365 WUBlastX LTR_Pao 251995 252378 29 + . . scaffold365 WUBlastX LTR_Pao 252133 253446 575 + . . scaffold365 WUBlastX LTR_Pao 253669 253857 29 + . . scaffold365 WUBlastX LTR_Pao 253761 253859 32 + . . scaffold365 WUBlastX LTR_Pao 253983 254939 371 + . . scaffold365 WUBlastX LTR_Pao 254938 255099 56 + . . scaffold365 TRF Tandem_Repeat 267516 267602 165 + . . scaffold365 WUBlastX RC_Helitron 271259 271690 73 + . . scaffold365 WUBlastX RC_Helitron 271999 272205 88 + . . scaffold365 TRF Tandem_Repeat 275497 276594 1008 + . . scaffold365 WUBlastX DNA_Kolobok 284594 284701 36 + . . scaffold365 WUBlastX DNA_Kolobok 285171 285419 104 + . . scaffold365 WUBlastX DNA_Kolobok 285656 285739 32 + . . scaffold365 WUBlastX DNA_Kolobok 286218 286436 90 + . . scaffold365 GLEAN promoter 288223 289222 0.999637 + . ID=CGI_10022725; scaffold365 GLEAN mRNA 289223 290368 0.999637 + . ID=CGI_10022725; scaffold365 GLEAN promoter 289837 290836 1 + . ID=CGI_10022726; scaffold365 GLEAN mRNA 290837 296028 1 + . ID=CGI_10022726; scaffold365 WUBlastX DNA_Kolobok 292970 293254 150 + . . scaffold365 WUBlastX DNA_Kolobok 293350 293604 150 + . . scaffold365 WUBlastX DNA_Kolobok 293699 293773 36 + . . scaffold365 WUBlastX DNA_Kolobok 293828 294016 25 + . . scaffold365 WUBlastX DNA_Kolobok 294128 294349 67 + . . scaffold365 WUBlastX DNA_Kolobok 294604 294744 48 + . . scaffold365 WUBlastX DNA_Kolobok 294610 294786 47 + . . scaffold365 WUBlastX DNA_Kolobok 295069 295311 103 + . . scaffold365 WUBlastX DNA_Kolobok 296173 296418 118 - . . scaffold365 WUBlastX DNA_Kolobok 296601 296711 22 - . . scaffold365 TRF Tandem_Repeat 299008 299043 63 + . . scaffold365 GLEAN mRNA 301777 302492 0.648556 - . ID=CGI_10022727; scaffold365 GLEAN promoter 302493 303492 0.648556 - . ID=CGI_10022727; scaffold365 TRF Tandem_Repeat 308048 308080 66 + . . scaffold365 GLEAN promoter 309739 310738 0.8898 + . ID=CGI_10022728; scaffold365 GLEAN mRNA 310739 316869 0.8898 + . ID=CGI_10022728; scaffold365 TRF Tandem_Repeat 310900 310941 84 + . . scaffold365 TRF Tandem_Repeat 325949 326018 70 + . . scaffold365 TRF Tandem_Repeat 325951 326020 63 + . . scaffold365 TRF Tandem_Repeat 325952 326080 72 + . . scaffold365 TRF Tandem_Repeat 326856 326937 60 + . . scaffold365 WUBlastX LINE_RTE-X 328155 328307 60 + . . scaffold365 WUBlastX LINE_RTE-X 328185 328370 54 + . . scaffold365 WUBlastX LINE_RTE-X 328185 328433 38 + . . scaffold365 WUBlastX LINE_RTE-X 328185 328328 68 + . . scaffold365 WUBlastX LINE_L2 328695 328949 43 - . . scaffold365 WUBlastX LINE_L2 328737 328940 48 - . . scaffold365 WUBlastX LINE_L2 328785 328946 51 - . . scaffold365 WUBlastX LINE_CR1 328821 328949 83 - . . scaffold365 WUBlastX LINE_CR1-L2 328869 328994 90 - . . scaffold365 GLEAN mRNA 331564 333450 0.999998 - . ID=CGI_10022729; scaffold365 GLEAN promoter 333451 334450 0.999998 - . ID=CGI_10022729; scaffold365 TRF Tandem_Repeat 336118 336156 78 + . . scaffold365 TRF Tandem_Repeat 336371 336412 66 + . . scaffold365 TRF Tandem_Repeat 341419 341451 66 + . . scaffold365 TRF Tandem_Repeat 343971 344034 128 + . . scaffold365 GLEAN mRNA 349903 351675 1 - . ID=CGI_10022730; scaffold365 GLEAN promoter 351676 352675 1 - . ID=CGI_10022730; scaffold365 TRF Tandem_Repeat 354327 354354 56 + . . scaffold365 GLEAN mRNA 359897 363005 0.999572 - . ID=CGI_10022731; scaffold365 TRF Tandem_Repeat 362040 362087 96 + . . scaffold365 GLEAN promoter 363006 364005 0.999572 - . ID=CGI_10022731; scaffold365 TRF Tandem_Repeat 369065 369110 92 + . . scaffold365 GLEAN mRNA 382223 383959 1 - . ID=CGI_10022732; scaffold365 TRF Tandem_Repeat 383623 383669 94 + . . scaffold365 GLEAN promoter 383960 384959 1 - . ID=CGI_10022732; scaffold365 TRF Tandem_Repeat 385225 385267 86 + . . scaffold365 WUBlastX LINE_L1 385517 385729 25 - . . scaffold365 WUBlastX LINE_L1-Tx1 385532 386203 24 - . . scaffold365 WUBlastX LINE_L1-Tx1 385535 385699 45 - . . scaffold365 WUBlastX LINE_L1-Tx1 385991 386239 30 - . . scaffold365 WUBlastX LINE_L1-Tx1 386329 386667 59 - . . scaffold365 WUBlastX LINE_L1 386395 386670 67 - . . scaffold365 WUBlastX LINE_L1 386503 386700 30 - . . scaffold365 WUBlastX LINE_L1 386702 386914 82 - . . scaffold365 WUBlastX LINE_L1-Tx1 386726 387997 21 - . . scaffold365 WUBlastX LINE_L1-Tx1 387254 387994 174 - . . scaffold365 WUBlastX LINE_L1 387848 388021 27 - . . scaffold365 TRF Tandem_Repeat 396298 396332 61 + . . scaffold365 GLEAN mRNA 399713 404131 0.560794 - . ID=CGI_10022733; scaffold365 GLEAN promoter 404132 405131 0.560794 - . ID=CGI_10022733; scaffold365 TRF Tandem_Repeat 405044 405100 114 + . . scaffold365 WUBlastX LINE_L1-Tx1 414254 414397 60 - . . scaffold365 WUBlastX LTR_DIRS 418095 418733 81 + . . scaffold365 WUBlastX DNA_PiggyBac 423668 424042 111 - . . scaffold365 WUBlastX DNA_PiggyBac 423764 424051 124 - . . scaffold365 WUBlastX DNA_PiggyBac 424041 424256 86 - . . scaffold365 WUBlastX DNA_PiggyBac 424041 424406 55 - . . scaffold365 TRF Tandem_Repeat 425766 426708 649 + . . scaffold365 TRF Tandem_Repeat 425767 426762 316 + . . scaffold365 TRF Tandem_Repeat 425767 426888 538 + . . scaffold365 TRF Tandem_Repeat 426003 426888 207 + . . scaffold365 TRF Tandem_Repeat 426069 426694 213 + . . scaffold365 TRF Tandem_Repeat 426089 426278 58 + . . scaffold365 GLEAN mRNA 428149 434023 0.999991 - . ID=CGI_10022734; scaffold365 GLEAN promoter 434024 435023 0.999991 - . ID=CGI_10022734; scaffold365 GLEAN mRNA 434141 436382 0.353831 - . ID=CGI_10022735; scaffold365 TRF Tandem_Repeat 436167 436219 54 + . . scaffold365 GLEAN promoter 436383 437382 0.353831 - . ID=CGI_10022735; scaffold365 GLEAN promoter 437893 438892 0.999946 + . ID=CGI_10022736; scaffold365 TRF Tandem_Repeat 438633 438686 108 + . . scaffold365 GLEAN mRNA 438893 441462 0.999946 + . ID=CGI_10022736; scaffold365 GLEAN promoter 440749 441748 1 + . ID=CGI_10022737; scaffold365 GLEAN mRNA 441749 443550 1 + . ID=CGI_10022737; scaffold365 GLEAN mRNA 445580 454152 1 - . ID=CGI_10022738; scaffold365 WUBlastX LINE_I 446102 446746 26 - . . scaffold365 WUBlastX LINE_L1 446318 446872 22 - . . scaffold365 GLEAN promoter 454153 455152 1 - . ID=CGI_10022738; scaffold365 GLEAN mRNA 455373 472723 0.998956 - . ID=CGI_10022739; scaffold365 TRF Tandem_Repeat 463478 463676 118 + . . scaffold365 TRF Tandem_Repeat 468104 468149 83 + . . scaffold365 GLEAN promoter 472724 473723 0.998956 - . ID=CGI_10022739; scaffold365 TRF Tandem_Repeat 473030 473074 90 + . . scaffold365 GLEAN mRNA 478293 489589 0.999676 - . ID=CGI_10022740; scaffold365 TRF Tandem_Repeat 479760 480502 988 + . . scaffold365 GLEAN promoter 489590 490589 0.999676 - . ID=CGI_10022740; scaffold365 TRF Tandem_Repeat 494167 494228 97 + . . scaffold365 GLEAN promoter 502372 503371 0.998505 + . ID=CGI_10022741; scaffold365 GLEAN mRNA 503372 520108 0.998505 + . ID=CGI_10022741; scaffold365 TRF Tandem_Repeat 511680 511736 107 + . . scaffold365 GLEAN mRNA 524212 565302 0.999166 - . ID=CGI_10022742; scaffold365 TRF Tandem_Repeat 528982 529027 92 + . . scaffold365 TRF Tandem_Repeat 560111 560152 77 + . . scaffold365 TRF Tandem_Repeat 560610 560642 66 + . . scaffold365 GLEAN promoter 565303 566302 0.999166 - . ID=CGI_10022742; scaffold365 GLEAN promoter 569241 570240 0.479657 + . ID=CGI_10022743; scaffold365 GLEAN mRNA 570241 589384 0.479657 + . ID=CGI_10022743; scaffold365 WUBlastX LTR_Pao 573585 573674 20 + . . scaffold365 GLEAN mRNA 578843 581397 0.999968 - . ID=CGI_10022744; scaffold365 WUBlastX DNA_Kolobok-Hyd 580621 581292 36 - . . scaffold365 WUBlastX DNA_IS4EU 580897 581310 54 - . . scaffold365 GLEAN promoter 581398 582397 0.999968 - . ID=CGI_10022744; scaffold365 WUBlastX DNA_Kolobok-Hyd 581478 581558 22 - . . scaffold365 TRF Tandem_Repeat 591904 593567 2122 + . . scaffold365 TRF Tandem_Repeat 594593 595409 673 + . . scaffold365 TRF Tandem_Repeat 595559 595607 62 + . . scaffold365 TRF Tandem_Repeat 605638 605698 59 + . . scaffold365 GLEAN mRNA 619623 633660 0.999999 - . ID=CGI_10022746; scaffold365 TRF Tandem_Repeat 621402 621444 86 + . . scaffold365 TRF Tandem_Repeat 623959 624092 105 + . . scaffold365 TRF Tandem_Repeat 628275 628316 52 + . . scaffold365 GLEAN promoter 633661 634660 0.999999 - . ID=CGI_10022746; scaffold365 TRF Tandem_Repeat 635341 635392 104 + . . scaffold365 GLEAN promoter 641185 642184 0.840087 + . ID=CGI_10022747; scaffold365 GLEAN mRNA 642185 654297 0.840087 + . ID=CGI_10022747; scaffold365 WUBlastX LINE_RTE-BovB 654448 654537 36 + . . scaffold365 TRF Tandem_Repeat 655048 655118 142 + . . scaffold365 TRF Tandem_Repeat 655932 656057 208 + . . scaffold365 TRF Tandem_Repeat 657602 657643 84 + . . scaffold365 GLEAN promoter 663594 664593 0.980063 + . ID=CGI_10022748; scaffold365 GLEAN mRNA 664594 670102 0.980063 + . ID=CGI_10022748; scaffold365 TRF Tandem_Repeat 665597 665659 119 + . . scaffold365 GLEAN promoter 672183 673182 1 + . ID=CGI_10022749; scaffold365 GLEAN mRNA 673183 675274 1 + . ID=CGI_10022749; scaffold365 WUBlastX LINE_RTE-BovB 678361 678618 97 - . . scaffold365 WUBlastX LINE_RTE-BovB 678563 678949 126 - . . scaffold365 WUBlastX LINE_RTE-BovB 678981 679235 73 - . . scaffold365 WUBlastX LINE_RTE-BovB 679023 679292 244 - . . scaffold365 WUBlastX LINE_RTE-BovB 679267 680109 179 - . . scaffold365 TRF Tandem_Repeat 679527 679566 80 + . . scaffold365 GLEAN promoter 681189 682188 0.998703 + . ID=CGI_10022750; scaffold365 GLEAN mRNA 682189 684739 0.998703 + . ID=CGI_10022750; scaffold365 GLEAN promoter 686597 687596 1 + . ID=CGI_10022751; scaffold365 GLEAN mRNA 687597 694456 1 + . ID=CGI_10022751; scaffold365 TRF Tandem_Repeat 687918 687986 138 + . . scaffold365 GLEAN mRNA 690001 715431 0.888354 - . ID=CGI_10022752; scaffold365 WUBlastX DNA_TcMar-Tc1 698815 699693 423 - . . scaffold365 GLEAN promoter 699896 700895 0.999999 + . ID=CGI_10022753; scaffold365 GLEAN mRNA 700896 704718 0.999999 + . ID=CGI_10022753; scaffold365 TRF Tandem_Repeat 701196 701246 102 + . . scaffold365 TRF Tandem_Repeat 708181 708245 58 + . . scaffold365 TRF Tandem_Repeat 709232 709998 963 + . . scaffold365 TRF Tandem_Repeat 710110 710147 58 + . . scaffold365 TRF Tandem_Repeat 711826 711855 60 + . . scaffold365 GLEAN promoter 715432 716431 0.888354 - . ID=CGI_10022752; scaffold365 GLEAN mRNA 716017 719410 0.999547 - . ID=CGI_10022754; scaffold365 GLEAN promoter 719411 720410 0.999547 - . ID=CGI_10022754; scaffold365 GLEAN promoter 719765 720764 0.88989 + . ID=CGI_10022755; scaffold365 WUBlastX LINE_RTE-BovB 720260 720610 94 - . . scaffold365 WUBlastX LINE_RTE-BovB 720473 720715 65 - . . scaffold365 GLEAN mRNA 720765 729198 0.88989 + . ID=CGI_10022755; scaffold365 GLEAN mRNA 733189 743756 0.999676 - . ID=CGI_10022756; scaffold365 TRF Tandem_Repeat 741824 741914 65 + . . scaffold365 GLEAN promoter 743757 744756 0.999676 - . ID=CGI_10022756; scaffold365 WUBlastX LINE_RTE-BovB 749056 749172 55 - . . scaffold365 GLEAN mRNA 751156 752218 0.556794 - . ID=CGI_10022757; scaffold365 GLEAN promoter 752219 753218 0.556794 - . ID=CGI_10022757; scaffold365 GLEAN mRNA 759068 772812 0.699164 - . ID=CGI_10022758; scaffold365 GLEAN promoter 765945 766944 0.5 + . ID=CGI_10022759; scaffold365 GLEAN mRNA 766945 768455 0.5 + . ID=CGI_10022759; scaffold365 GLEAN promoter 772813 773812 0.699164 - . ID=CGI_10022758; scaffold365 GLEAN promoter 775134 776133 0.78423 + . ID=CGI_10022760; scaffold365 GLEAN mRNA 776134 780601 0.78423 + . ID=CGI_10022760; scaffold36506 GLEAN mRNA 3703 31557 0.932991 - . ID=CGI_10001981; scaffold36506 GLEAN promoter 18303 19302 1 + . ID=CGI_10001982; scaffold36506 GLEAN mRNA 19303 19962 1 + . ID=CGI_10001982; scaffold36506 GLEAN promoter 26125 27124 0.999647 + . ID=CGI_10001983; scaffold36506 GLEAN mRNA 27125 33043 0.999647 + . ID=CGI_10001983; scaffold36506 GLEAN promoter 31558 32557 0.932991 - . ID=CGI_10001981; scaffold36510 TRF Tandem_Repeat 7988 8036 89 + . . scaffold36510 WUBlastX LINE_Penelope 9178 9753 29 - . . scaffold36510 TRF Tandem_Repeat 9763 9791 58 + . . scaffold36510 TRF Tandem_Repeat 9991 10044 51 + . . scaffold36510 TRF Tandem_Repeat 13980 14013 68 + . . scaffold36510 WUBlastX LTR_DIRS 28042 28692 97 + . . scaffold36510 WUBlastX LTR_DIRS 28817 30085 197 + . . scaffold36510 WUBlastX LTR_DIRS? 30143 30538 191 - . . scaffold36510 WUBlastX LTR_DIRS 30573 30758 38 - . . scaffold36526 WUBlastX LINE_Penelope 2156 2374 72 - . . scaffold36526 GLEAN promoter 9575 10574 0.999676 + . ID=CGI_10002008; scaffold36526 GLEAN mRNA 10575 29087 0.999676 + . ID=CGI_10002008; scaffold36526 WUBlastX LINE_L1-Tx1 20526 20948 45 - . . scaffold36526 WUBlastX LINE_L1-Tx1 20604 20948 53 - . . scaffold36526 WUBlastX LINE_L1-Tx1 21067 21417 47 - . . scaffold36526 WUBlastX LINE_L1-Tx1 21169 21438 52 - . . scaffold36526 WUBlastX LINE_L1 21217 21417 73 - . . scaffold36526 WUBlastX LINE_L1 21483 21950 76 - . . scaffold36526 WUBlastX LINE_L1-Tx1 21624 22049 172 - . . scaffold36526 TRF Tandem_Repeat 30058 30096 64 + . . scaffold36526 TRF Tandem_Repeat 30244 30298 69 + . . scaffold36526 TRF Tandem_Repeat 30255 30309 101 + . . scaffold36526 TRF Tandem_Repeat 30260 30309 64 + . . scaffold36542 GLEAN promoter 1534 2533 0.836238 + . ID=CGI_10002010; scaffold36542 GLEAN mRNA 2534 8264 0.836238 + . ID=CGI_10002010; scaffold36548 GLEAN promoter 1 53 0.998108 + . ID=CGI_10001986; scaffold36548 GLEAN mRNA 54 13973 0.998108 + . ID=CGI_10001986; scaffold36548 GLEAN promoter 16415 17414 1 + . ID=CGI_10001987; scaffold36548 GLEAN mRNA 17415 21352 1 + . ID=CGI_10001987; scaffold36548 GLEAN promoter 33405 34404 0.481188 + . ID=CGI_10001988; scaffold36548 GLEAN mRNA 34405 34992 0.481188 + . ID=CGI_10001988; scaffold36572 TRF Tandem_Repeat 5108 5171 110 + . . scaffold36572 GLEAN mRNA 5417 10874 0.712459 - . ID=CGI_10002009; scaffold36572 TRF Tandem_Repeat 9077 9117 82 + . . scaffold36572 GLEAN promoter 10875 11874 0.712459 - . ID=CGI_10002009; scaffold36572 WUBlastX LINE_RTE-X 14565 14906 34 - . . scaffold36572 TRF Tandem_Repeat 15751 15809 118 + . . scaffold36572 TRF Tandem_Repeat 26363 26388 52 + . . scaffold36592 GLEAN mRNA 3492 17308 0.981368 - . ID=CGI_10002019; scaffold36592 GLEAN promoter 17309 18308 0.981368 - . ID=CGI_10002019; scaffold36592 GLEAN mRNA 34360 35998 1 - . ID=CGI_10002020; scaffold36592 GLEAN promoter 35999 36504 1 - . ID=CGI_10002020; scaffold36594 GLEAN promoter 1 612 1 + . ID=CGI_10002011; scaffold36594 GLEAN mRNA 613 978 1 + . ID=CGI_10002011; scaffold36598 GLEAN promoter 9870 10869 0.999993 + . ID=CGI_10002012; scaffold36598 GLEAN mRNA 10870 17380 0.999993 + . ID=CGI_10002012; scaffold36598 WUBlastX DNA_IS4EU 11596 11931 85 + . . scaffold36598 WUBlastX DNA_Kolobok-IS4 12817 13545 130 - . . scaffold36598 WUBlastX DNA_IS4EU 12892 13779 61 - . . scaffold36598 GLEAN mRNA 27586 31293 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 27987 28955 157 - . . scaffold36598 WUBlastX LTR_Ngaro 28892 29107 112 - . . scaffold36598 WUBlastX LTR_Ngaro 29580 30023 163 - . . scaffold36598 WUBlastX LTR_Ngaro 30041 30256 149 - . . scaffold36598 WUBlastX LTR_Ngaro 30301 31068 379 - . . scaffold36598 GLEAN promoter 31294 32293 0.99428 - . ID=CGI_10002013; scaffold36598 WUBlastX LTR_Ngaro 31321 31551 77 - . . scaffold36598 WUBlastX LTR_Ngaro 31363 31503 110 - . . scaffold36598 WUBlastX LTR_Ngaro 32488 32691 50 - . . scaffold36598 WUBlastX LTR_Ngaro 32661 32780 61 - . . scaffold36598 WUBlastX DNA_hAT-Blackja 34006 34314 77 - . . scaffold366 GLEAN mRNA 509 12362 0.308663 - . ID=CGI_10007770; scaffold366 GLEAN promoter 3558 4557 1 + . ID=CGI_10007771; scaffold366 GLEAN mRNA 4558 26262 1 + . ID=CGI_10007771; scaffold366 TRF Tandem_Repeat 10694 10732 53 + . . scaffold366 WUBlastX DNA_Novosib 11619 11789 30 + . . scaffold366 WUBlastX LTR_Gypsy 11652 11804 89 + . . scaffold366 GLEAN promoter 12363 13362 0.308663 - . ID=CGI_10007770; scaffold366 TRF Tandem_Repeat 13994 14081 118 + . . scaffold366 TRF Tandem_Repeat 18636 18662 54 + . . scaffold366 WUBlastX LTR_Pao 25495 25695 36 + . . scaffold366 GLEAN mRNA 30850 48321 0.999676 - . ID=CGI_10007772; scaffold366 TRF Tandem_Repeat 41247 41750 536 + . . scaffold366 TRF Tandem_Repeat 42011 42387 337 + . . scaffold366 GLEAN promoter 47638 48637 1 + . ID=CGI_10007773; scaffold366 GLEAN promoter 48322 49321 0.999676 - . ID=CGI_10007772; scaffold366 GLEAN mRNA 48638 59458 1 + . ID=CGI_10007773; scaffold366 GLEAN promoter 66641 67640 0.99068 + . ID=CGI_10007774; scaffold366 GLEAN mRNA 67641 95701 0.99068 + . ID=CGI_10007774; scaffold366 TRF Tandem_Repeat 68170 70871 1280 + . . scaffold366 TRF Tandem_Repeat 68170 69450 1270 + . . scaffold366 TRF Tandem_Repeat 69765 71016 2359 + . . scaffold366 TRF Tandem_Repeat 77213 78152 1023 + . . scaffold366 TRF Tandem_Repeat 88146 88880 1149 + . . scaffold366 GLEAN mRNA 98787 100451 1 - . ID=CGI_10007775; scaffold366 GLEAN promoter 100452 101451 1 - . ID=CGI_10007775; scaffold366 WUBlastX LINE_RTE-X 101944 102837 535 + . . scaffold366 WUBlastX LINE_RTE-X 102295 102960 107 + . . scaffold366 GLEAN promoter 105879 106878 0.490969 + . ID=CGI_10007776; scaffold366 GLEAN mRNA 106879 123133 0.490969 + . ID=CGI_10007776; scaffold366 WUBlastX DNA_Harbinger 106924 107355 193 + . . scaffold366 WUBlastX DNA_Harbinger 107351 107827 419 + . . scaffold366 WUBlastX DNA_Harbinger 108543 109022 212 - . . scaffold366 TRF Tandem_Repeat 109346 109398 106 + . . scaffold366 WUBlastX DNA_Harbinger 117429 117698 107 + . . scaffold366 TRF Tandem_Repeat 117912 117958 85 + . . scaffold366 WUBlastX DNA_Harbinger 119074 119382 79 - . . scaffold366 WUBlastX DNA_Harbinger 119128 119361 82 - . . scaffold366 WUBlastX DNA_Harbinger 119188 119361 92 - . . scaffold366 WUBlastX DNA_Harbinger 119340 119579 92 - . . scaffold366 GLEAN promoter 122984 123983 0.990718 + . ID=CGI_10007777; scaffold366 TRF Tandem_Repeat 123310 123348 51 + . . scaffold366 GLEAN mRNA 123984 129964 0.990718 + . ID=CGI_10007777; scaffold366 TRF Tandem_Repeat 124177 124227 102 + . . scaffold366 TRF Tandem_Repeat 127152 127231 160 + . . scaffold366 TRF Tandem_Repeat 128542 128660 168 + . . scaffold366 TRF Tandem_Repeat 131693 131734 84 + . . scaffold366 TRF Tandem_Repeat 141590 142510 856 + . . scaffold366 WUBlastX LINE_CR1-L2 152518 152769 73 + . . scaffold366 TRF Tandem_Repeat 170500 170542 61 + . . scaffold366 WUBlastX LINE_RTE-BovB 170722 171147 294 - . . scaffold366 WUBlastX DNA_Kolobok-Hyd 179715 180239 22 + . . scaffold366 TRF Tandem_Repeat 182752 182791 53 + . . scaffold366 TRF Tandem_Repeat 189725 189858 101 + . . scaffold366 TRF Tandem_Repeat 190309 190756 573 + . . scaffold36624 TRF Tandem_Repeat 2766 2814 98 + . . scaffold36624 TRF Tandem_Repeat 6986 7044 82 + . . scaffold36624 TRF Tandem_Repeat 7323 7382 68 + . . scaffold36624 TRF Tandem_Repeat 7324 7382 70 + . . scaffold36624 TRF Tandem_Repeat 7337 7383 60 + . . scaffold36624 TRF Tandem_Repeat 11580 11613 61 + . . scaffold36624 GLEAN mRNA 24222 24830 0.777975 - . ID=CGI_10002023; scaffold36624 GLEAN promoter 24831 25830 0.777975 - . ID=CGI_10002023; scaffold36624 TRF Tandem_Repeat 32326 32398 101 + . . scaffold36624 WUBlastX LINE_RTE-X 34887 35000 26 - . . scaffold36624 WUBlastX LINE_RTE-X 35008 35310 111 - . . scaffold36624 GLEAN promoter 35234 36233 0.776639 + . ID=CGI_10002024; scaffold36624 WUBlastX LINE_RTE-X 35339 35488 45 - . . scaffold36624 WUBlastX LINE_RTE-X 35369 35518 22 - . . scaffold36624 GLEAN mRNA 36234 36476 0.776639 + . ID=CGI_10002024; scaffold36624 TRF Tandem_Repeat 36560 36609 75 + . . scaffold36630 GLEAN mRNA 30077 32013 0.72876 - . ID=CGI_10002022; scaffold36630 GLEAN promoter 32014 33013 0.72876 - . ID=CGI_10002022; scaffold36638 GLEAN promoter 2118 3117 0.499919 + . ID=CGI_10002047; scaffold36638 GLEAN mRNA 3118 17920 0.499919 + . ID=CGI_10002047; scaffold36638 WUBlastX LINE_RTE-X 13742 13972 49 + . . scaffold36638 WUBlastX LINE_RTE-X 13868 13984 69 + . . scaffold36638 TRF Tandem_Repeat 15377 15442 59 + . . scaffold36638 TRF Tandem_Repeat 15515 15636 52 + . . scaffold36638 GLEAN mRNA 17857 30051 1 - . ID=CGI_10002048; scaffold36638 TRF Tandem_Repeat 24991 25659 777 + . . scaffold36638 TRF Tandem_Repeat 25251 25406 82 + . . scaffold36638 GLEAN promoter 30052 31051 1 - . ID=CGI_10002048; scaffold36638 GLEAN promoter 30288 31287 0.990759 + . ID=CGI_10002049; scaffold36638 GLEAN mRNA 31288 35305 0.990759 + . ID=CGI_10002049; scaffold36640 GLEAN promoter 17571 18570 0.999993 + . ID=CGI_10002031; scaffold36640 GLEAN mRNA 18571 20932 0.999993 + . ID=CGI_10002031; scaffold36640 GLEAN promoter 21540 22539 1 + . ID=CGI_10002032; scaffold36640 GLEAN mRNA 22540 26890 1 + . ID=CGI_10002032; scaffold36640 GLEAN mRNA 28736 29197 0.449004 - . ID=CGI_10002033; scaffold36640 GLEAN promoter 29198 30197 0.449004 - . ID=CGI_10002033; scaffold36640 GLEAN mRNA 34863 36765 1 - . ID=CGI_10002034; scaffold36640 GLEAN promoter 36766 36779 1 - . ID=CGI_10002034; scaffold36642 GLEAN promoter 1 975 0.999986 + . ID=CGI_10002025; scaffold36642 GLEAN mRNA 976 27657 0.999986 + . ID=CGI_10002025; scaffold36642 TRF Tandem_Repeat 1347 1379 57 + . . scaffold36642 TRF Tandem_Repeat 2048 2096 55 + . . scaffold36642 WUBlastX LINE_L1-Tx1 2365 2808 31 - . . scaffold36642 WUBlastX LINE_L1-Tx1 2482 2808 68 - . . scaffold36642 WUBlastX LINE_L1 3077 3268 25 - . . scaffold36642 WUBlastX LINE_L1 3125 3268 43 - . . scaffold36642 WUBlastX LINE_L1-Tx1 3237 3746 55 - . . scaffold36642 WUBlastX LINE_L1-Tx1 3333 3764 137 - . . scaffold36642 TRF Tandem_Repeat 7210 7259 66 + . . scaffold36642 TRF Tandem_Repeat 8683 9611 1101 + . . scaffold36642 WUBlastX DNA_TcMar-Tc1 30346 30708 68 - . . scaffold36642 WUBlastX DNA_TcMar-Tc1 30346 30648 76 - . . scaffold36642 WUBlastX DNA_TcMar-Tc1 30346 30591 102 - . . scaffold36642 WUBlastX LTR_Gypsy 30971 31858 375 - . . scaffold36642 WUBlastX LTR_Gypsy 31151 31858 409 - . . scaffold36642 WUBlastX LTR_Gypsy 31855 33600 1467 - . . scaffold36642 WUBlastX LTR_Gypsy 33534 34889 496 - . . scaffold36650 GLEAN mRNA 306 13756 0.999675 - . ID=CGI_10002035; scaffold36650 GLEAN promoter 13757 14756 0.999675 - . ID=CGI_10002035; scaffold36650 GLEAN promoter 20317 21316 0.863254 + . ID=CGI_10002036; scaffold36650 GLEAN mRNA 21317 32816 0.863254 + . ID=CGI_10002036; scaffold36654 GLEAN mRNA 3797 4852 0.53146 - . ID=CGI_10002037; scaffold36654 GLEAN promoter 4853 5852 0.53146 - . ID=CGI_10002037; scaffold36654 GLEAN promoter 7962 8961 0.999892 + . ID=CGI_10002038; scaffold36654 GLEAN mRNA 8962 19516 0.999892 + . ID=CGI_10002038; scaffold36654 GLEAN promoter 22129 23128 0.701627 + . ID=CGI_10002039; scaffold36654 GLEAN mRNA 23129 30429 0.701627 + . ID=CGI_10002039; scaffold36660 GLEAN mRNA 3345 17007 0.531256 - . ID=CGI_10002044; scaffold36660 GLEAN promoter 17008 18007 0.531256 - . ID=CGI_10002044; scaffold36660 GLEAN mRNA 20639 34760 0.998836 - . ID=CGI_10002045; scaffold36660 GLEAN promoter 25968 26967 0.999982 + . ID=CGI_10002046; scaffold36660 GLEAN mRNA 26968 33078 0.999982 + . ID=CGI_10002046; scaffold36660 GLEAN promoter 34761 35760 0.998836 - . ID=CGI_10002045; scaffold36664 WUBlastX LTR_Gypsy-Cigr 23354 23920 173 + . . scaffold36664 WUBlastX LTR_Gypsy 23459 24211 167 + . . scaffold36664 WUBlastX LTR_Gypsy 24274 24672 61 + . . scaffold36664 WUBlastX LTR_Gypsy 24346 25263 169 + . . scaffold36664 WUBlastX LTR_Gypsy-Cigr 25274 27289 1633 + . . scaffold36664 WUBlastX LTR_Gypsy 27223 27789 164 + . . scaffold36664 WUBlastX LTR_Gypsy-Cigr 27268 27696 237 + . . scaffold36664 WUBlastX LTR_Gypsy 27699 27977 33 + . . scaffold36664 WUBlastX LTR_Gypsy 27711 27887 45 + . . scaffold36664 WUBlastX LTR_Gypsy 27711 27815 58 + . . scaffold36664 GLEAN mRNA 28280 28558 1 - . ID=CGI_10002021; scaffold36664 GLEAN promoter 28559 29558 1 - . ID=CGI_10002021; scaffold36672 GLEAN promoter 25443 26442 1 + . ID=CGI_10002065; scaffold36672 GLEAN mRNA 26443 33856 1 + . ID=CGI_10002065; scaffold36674 GLEAN promoter 2522 3521 0.999675 + . ID=CGI_10002040; scaffold36674 GLEAN mRNA 3522 15977 0.999675 + . ID=CGI_10002040; scaffold36674 TRF Tandem_Repeat 5582 5635 76 + . . scaffold36674 TRF Tandem_Repeat 5587 5632 76 + . . scaffold36674 GLEAN mRNA 16588 28311 0.651086 - . ID=CGI_10002041; scaffold36674 TRF Tandem_Repeat 24832 24872 82 + . . scaffold36674 GLEAN promoter 28312 29311 0.651086 - . ID=CGI_10002041; scaffold36674 WUBlastX LINE_L1-Tx1 29991 30416 160 + . . scaffold36674 WUBlastX LINE_CR1 29994 30335 177 + . . scaffold36674 GLEAN promoter 31639 32638 0.999372 + . ID=CGI_10002042; scaffold36674 GLEAN promoter 32010 33009 0.999372 + . ID=CGI_10002043; scaffold36674 GLEAN mRNA 32639 32971 0.999372 + . ID=CGI_10002042; scaffold36674 GLEAN mRNA 33010 33351 0.999372 + . ID=CGI_10002043; scaffold36674 WUBlastX LINE_L1 33399 33590 82 + . . scaffold36674 WUBlastX LINE_L1 33432 33632 104 + . . scaffold36674 TRF Tandem_Repeat 35363 35416 108 + . . scaffold36678 GLEAN promoter 1 969 1 + . ID=CGI_10002066; scaffold36678 GLEAN mRNA 970 3647 1 + . ID=CGI_10002066; scaffold36678 GLEAN mRNA 6424 23090 0.818927 - . ID=CGI_10002067; scaffold36678 GLEAN promoter 23091 24090 0.818927 - . ID=CGI_10002067; scaffold36684 TRF Tandem_Repeat 280 432 148 + . . scaffold36684 TRF Tandem_Repeat 4526 4556 62 + . . scaffold36684 TRF Tandem_Repeat 6493 6541 73 + . . scaffold36684 TRF Tandem_Repeat 6501 6551 56 + . . scaffold36684 WUBlastX DNA_Maverick 7080 7391 67 + . . scaffold36684 WUBlastX DNA_Maverick 7178 7873 99 + . . scaffold36684 WUBlastX DNA_Maverick 8832 8987 21 + . . scaffold36684 WUBlastX LTR_Ngaro 18926 19216 77 - . . scaffold36684 WUBlastX LTR_Ngaro 19013 19237 109 - . . scaffold36684 WUBlastX LTR_Ngaro 19207 19824 122 - . . scaffold36684 WUBlastX LTR_Ngaro 19909 20244 110 - . . scaffold36684 WUBlastX LTR_Ngaro 19969 20244 153 - . . scaffold36684 WUBlastX LTR_Ngaro 20249 20416 135 - . . scaffold36684 WUBlastX LTR_Ngaro 20419 20958 111 - . . scaffold36684 WUBlastX LTR_Ngaro 20766 21476 126 - . . scaffold36684 WUBlastX LTR_Ngaro 20766 21362 162 - . . scaffold36684 WUBlastX LTR_Ngaro 21498 22055 76 - . . scaffold36684 WUBlastX LTR_Ngaro 21645 22319 75 - . . scaffold36698 TRF Tandem_Repeat 53 852 1370 + . . scaffold36698 TRF Tandem_Repeat 911 944 68 + . . scaffold36698 GLEAN mRNA 1616 6984 0.999949 - . ID=CGI_10002014; scaffold36698 WUBlastX DNA_TcMar-Marin 2417 2635 36 - . . scaffold36698 WUBlastX DNA_TcMar-Marin 2444 2623 39 - . . scaffold36698 TRF Tandem_Repeat 3653 5377 2003 + . . scaffold36698 TRF Tandem_Repeat 5562 5600 51 + . . scaffold36698 GLEAN promoter 6985 7984 0.999949 - . ID=CGI_10002014; scaffold36698 GLEAN mRNA 7322 11938 0.999997 - . ID=CGI_10002015; scaffold36698 TRF Tandem_Repeat 7923 7989 66 + . . scaffold36698 TRF Tandem_Repeat 8111 9239 1167 + . . scaffold36698 TRF Tandem_Repeat 8112 9296 1088 + . . scaffold36698 GLEAN promoter 11939 12938 0.999997 - . ID=CGI_10002015; scaffold36698 GLEAN promoter 31045 32044 1 + . ID=CGI_10002016; scaffold36698 GLEAN mRNA 32045 34310 1 + . ID=CGI_10002016; scaffold36716 WUBlastX LTR_Gypsy 16 870 186 - . . scaffold36716 WUBlastX LTR_Gypsy 55 780 209 - . . scaffold36716 GLEAN promoter 2364 3363 0.45345 + . ID=CGI_10002099; scaffold36716 GLEAN mRNA 3364 17074 0.45345 + . ID=CGI_10002099; scaffold36716 TRF Tandem_Repeat 7877 7920 88 + . . scaffold36716 WUBlastX DNA_Harbinger 19284 19928 56 - . . scaffold36716 WUBlastX DNA_Harbinger 19413 20153 62 - . . scaffold36716 WUBlastX DNA_Harbinger 19542 20291 56 - . . scaffold36716 WUBlastX LINE_L1 23791 24300 63 + . . scaffold36716 WUBlastX LINE_L2 23881 24306 83 + . . scaffold36716 WUBlastX LINE_L2 23965 24396 151 + . . scaffold36716 WUBlastX LINE_L2 24242 24580 39 + . . scaffold36716 WUBlastX LINE_L2 25418 25687 87 + . . scaffold36716 GLEAN mRNA 35277 37031 0.4348 - . ID=CGI_10002100; scaffold36716 GLEAN promoter 37032 37440 0.4348 - . ID=CGI_10002100; scaffold36728 TRF Tandem_Repeat 41 91 102 + . . scaffold36728 GLEAN mRNA 432 7345 0.999672 - . ID=CGI_10002097; scaffold36728 WUBlastX LINE_Penelope 671 1699 422 - . . scaffold36728 WUBlastX LINE_RTE-X 3852 5267 685 - . . scaffold36728 GLEAN promoter 7346 8345 0.999672 - . ID=CGI_10002097; scaffold36728 GLEAN mRNA 12497 34643 0.990125 - . ID=CGI_10002098; scaffold36728 TRF Tandem_Repeat 19112 19409 276 + . . scaffold36728 TRF Tandem_Repeat 23689 24246 954 + . . scaffold36728 GLEAN promoter 34644 35643 0.990125 - . ID=CGI_10002098; scaffold36730 GLEAN promoter 17875 18874 0.992888 + . ID=CGI_10002105; scaffold36730 GLEAN mRNA 18875 22412 0.992888 + . ID=CGI_10002105; scaffold36732 GLEAN mRNA 2510 2845 0.999911 - . ID=CGI_10002101; scaffold36732 GLEAN promoter 2846 3845 0.999911 - . ID=CGI_10002101; scaffold36732 WUBlastX DNA_Kolobok 4542 5102 68 - . . scaffold36732 WUBlastX DNA_Kolobok 4554 5204 63 - . . scaffold36732 GLEAN mRNA 18064 24631 0.999911 - . ID=CGI_10002102; scaffold36732 GLEAN promoter 24632 25631 0.999911 - . ID=CGI_10002102; scaffold36732 GLEAN promoter 25578 26577 0.998281 + . ID=CGI_10002103; scaffold36732 GLEAN mRNA 26578 31316 0.998281 + . ID=CGI_10002103; scaffold36732 TRF Tandem_Repeat 35970 36031 99 + . . scaffold36732 TRF Tandem_Repeat 35971 36028 73 + . . scaffold36736 TRF Tandem_Repeat 7169 7215 94 + . . scaffold36736 GLEAN promoter 12136 13135 0.999821 + . ID=CGI_10002104; scaffold36736 GLEAN mRNA 13136 21817 0.999821 + . ID=CGI_10002104; scaffold36736 TRF Tandem_Repeat 22619 22655 56 + . . scaffold36736 TRF Tandem_Repeat 29454 29600 73 + . . scaffold36736 TRF Tandem_Repeat 29516 29664 97 + . . scaffold36736 WUBlastX LTR_DIRS 33124 33867 182 + . . scaffold36736 WUBlastX LTR_DIRS 33885 34322 134 + . . scaffold36736 WUBlastX LTR_DIRS 33915 34442 50 + . . scaffold36736 TRF Tandem_Repeat 36519 36560 84 + . . scaffold36748 TRF Tandem_Repeat 4781 4805 50 + . . scaffold36748 WUBlastX LINE_L2 5048 6304 810 - . . scaffold36748 WUBlastX LINE_L2 5057 6550 260 - . . scaffold36748 WUBlastX LINE_L2 6301 6624 52 - . . scaffold36748 WUBlastX LINE_CR1-L2 7170 7271 24 - . . scaffold36748 WUBlastX DNA_Harbinger 11632 12489 277 - . . scaffold36748 WUBlastX DNA_Harbinger 11782 12651 383 - . . scaffold36748 WUBlastX LINE_RTE-X 14705 15091 166 + . . scaffold36748 WUBlastX LINE_RTE-BovB 15106 15375 45 + . . scaffold36748 WUBlastX LINE_RTE-BovB 15154 17010 216 + . . scaffold36748 WUBlastX LINE_RTE-X 15598 17643 618 + . . scaffold36748 WUBlastX LINE_RTE-X 15994 17730 658 + . . scaffold36748 GLEAN mRNA 19237 21111 1 - . ID=CGI_10002096; scaffold36748 GLEAN promoter 21112 22111 1 - . ID=CGI_10002096; scaffold36758 WUBlastX LINE_L1-Tx1 2 1576 1029 + . . scaffold36758 WUBlastX LINE_L1 2 1915 698 + . . scaffold36758 WUBlastX LINE_L1-Tx1 20 2617 628 + . . scaffold36758 TRF Tandem_Repeat 2870 2916 62 + . . scaffold36758 TRF Tandem_Repeat 3785 3876 123 + . . scaffold36758 TRF Tandem_Repeat 4974 5013 80 + . . scaffold36758 WUBlastX RC_Helitron 8665 10155 979 + . . scaffold36758 WUBlastX LINE_CR1 10308 13523 2066 - . . scaffold36758 WUBlastX LINE_L2 13434 13544 41 - . . scaffold36758 TRF Tandem_Repeat 14631 14689 118 + . . scaffold36758 GLEAN promoter 15115 16114 0.999899 + . ID=CGI_10002110; scaffold36758 GLEAN mRNA 16115 18770 0.999899 + . ID=CGI_10002110; scaffold36758 GLEAN mRNA 20088 24764 0.920529 - . ID=CGI_10002111; scaffold36758 GLEAN promoter 24765 25764 0.920529 - . ID=CGI_10002111; scaffold36760 GLEAN promoter 34124 35123 1 + . ID=CGI_10002112; scaffold36760 GLEAN mRNA 35124 37702 1 + . ID=CGI_10002112; scaffold36768 TRF Tandem_Repeat 3734 3779 92 + . . scaffold36768 WUBlastX LINE_Penelope 19200 19610 36 - . . scaffold36768 WUBlastX LINE_Penelope 19203 19421 56 - . . scaffold36768 TRF Tandem_Repeat 20290 20769 452 + . . scaffold36768 TRF Tandem_Repeat 20290 20769 419 + . . scaffold36768 GLEAN promoter 28335 29334 1 + . ID=CGI_10002113; scaffold36768 GLEAN mRNA 29335 37620 1 + . ID=CGI_10002113; scaffold36768 WUBlastX LINE_L1-Tx1 36494 36679 55 + . . scaffold36768 WUBlastX LINE_L1-Tx1 36533 36691 82 + . . scaffold36768 WUBlastX LINE_L1-Tx1 36685 37212 169 + . . scaffold36768 WUBlastX LINE_L1 36685 37359 59 + . . scaffold36774 GLEAN promoter 35 1034 1 + . ID=CGI_10002114; scaffold36774 GLEAN mRNA 1035 17114 1 + . ID=CGI_10002114; scaffold36774 GLEAN promoter 17060 18059 0.999993 + . ID=CGI_10002115; scaffold36774 GLEAN mRNA 18060 23122 0.999993 + . ID=CGI_10002115; scaffold36774 GLEAN promoter 22693 23692 1 + . ID=CGI_10002116; scaffold36774 GLEAN mRNA 23693 25492 1 + . ID=CGI_10002116; scaffold36774 WUBlastX LINE_Proto2 25569 26171 65 + . . scaffold36774 GLEAN mRNA 30245 34969 0.99534 - . ID=CGI_10002117; scaffold36774 GLEAN promoter 34970 35969 0.99534 - . ID=CGI_10002117; scaffold36778 TRF Tandem_Repeat 29818 29877 111 + . . scaffold36778 WUBlastX LINE_L1 32684 33409 20 + . . scaffold36778 WUBlastX LTR_Gypsy 33215 33823 34 + . . scaffold36778 WUBlastX LTR_Gypsy 33323 33892 141 + . . scaffold36778 WUBlastX LTR_Gypsy 33413 34048 61 + . . scaffold36778 WUBlastX LINE_CR1 35273 35596 26 + . . scaffold36790 GLEAN promoter 6953 7952 0.842202 + . ID=CGI_10002140; scaffold36790 GLEAN mRNA 7953 9843 0.842202 + . ID=CGI_10002140; scaffold36790 GLEAN mRNA 14645 35591 0.936014 - . ID=CGI_10002141; scaffold36790 WUBlastX LTR_Ngaro 25324 25449 77 + . . scaffold36790 WUBlastX LTR_Ngaro 25463 25768 157 + . . scaffold36790 WUBlastX LTR_Ngaro 25776 25859 28 + . . scaffold36790 WUBlastX LTR_Ngaro 25791 25865 56 + . . scaffold36790 WUBlastX LTR_Ngaro 26004 26495 177 + . . scaffold36790 WUBlastX LTR_Ngaro 26028 26633 138 + . . scaffold36790 WUBlastX LTR_Ngaro 26094 26501 198 + . . scaffold36790 WUBlastX LTR_Ngaro 26527 26805 129 + . . scaffold36790 GLEAN promoter 35592 36591 0.936014 - . ID=CGI_10002141; scaffold36794 GLEAN mRNA 1583 1864 0.999372 - . ID=CGI_10002118; scaffold36794 GLEAN promoter 1865 2864 0.999372 - . ID=CGI_10002118; scaffold36794 GLEAN promoter 2731 3730 0.499919 + . ID=CGI_10002119; scaffold36794 GLEAN mRNA 3731 8474 0.499919 + . ID=CGI_10002119; scaffold36794 WUBlastX LTR_Ngaro 4940 6133 93 + . . scaffold36794 WUBlastX LTR_Ngaro 5477 6130 154 + . . scaffold36794 WUBlastX LTR_Ngaro 6054 7679 1037 + . . scaffold36794 TRF Tandem_Repeat 10983 11029 94 + . . scaffold36794 WUBlastX LINE_L1-Tx1 13976 14542 133 + . . scaffold36794 WUBlastX LINE_L1 14198 14530 200 + . . scaffold36794 WUBlastX LINE_L1-Tx1 14210 14887 185 + . . scaffold36794 WUBlastX LINE_L1-Tx1 14869 15711 44 + . . scaffold36794 WUBlastX LINE_L1-Tx1 14875 15507 212 + . . scaffold36794 TRF Tandem_Repeat 17603 17653 102 + . . scaffold36794 TRF Tandem_Repeat 21186 21219 68 + . . scaffold36794 WUBlastX DNA_TcMar-Tc1 27875 28117 89 + . . scaffold36794 WUBlastX DNA_TcMar-Tc1 27881 28219 58 + . . scaffold36794 GLEAN promoter 36576 37575 0.999372 + . ID=CGI_10002120; scaffold36794 WUBlastX DNA_Maverick 36805 36924 42 + . . scaffold36794 WUBlastX DNA_Maverick 37022 37144 48 + . . scaffold36794 WUBlastX DNA_Maverick 37124 37459 63 + . . scaffold36794 WUBlastX DNA_Maverick 37223 37468 70 + . . scaffold36794 GLEAN mRNA 37576 37872 0.999372 + . ID=CGI_10002120; scaffold368 TRF Tandem_Repeat 14125 14150 52 + . . scaffold368 GLEAN promoter 16066 17065 0.999972 + . ID=CGI_10018689; scaffold368 GLEAN mRNA 17066 24073 0.999972 + . ID=CGI_10018689; scaffold368 TRF Tandem_Repeat 19091 19122 57 + . . scaffold368 GLEAN promoter 26645 27644 1 + . ID=CGI_10018690; scaffold368 GLEAN mRNA 27645 31175 1 + . ID=CGI_10018690; scaffold368 GLEAN mRNA 27692 45024 0.754759 - . ID=CGI_10018691; scaffold368 WUBlastX DNA_Harbinger 31236 31544 48 + . . scaffold368 WUBlastX DNA_Harbinger 31365 31544 60 + . . scaffold368 TRF Tandem_Repeat 31753 31803 102 + . . scaffold368 WUBlastX DNA_Harbinger 40072 40233 91 - . . scaffold368 WUBlastX DNA_Harbinger 40671 40826 61 - . . scaffold368 GLEAN promoter 45025 46024 0.754759 - . ID=CGI_10018691; scaffold368 GLEAN mRNA 45173 45535 0.52418 - . ID=CGI_10018692; scaffold368 GLEAN promoter 45536 46535 0.52418 - . ID=CGI_10018692; scaffold368 GLEAN mRNA 48878 62729 0.988335 - . ID=CGI_10018693; scaffold368 GLEAN promoter 59997 60996 0.988877 + . ID=CGI_10018694; scaffold368 GLEAN mRNA 60997 69028 0.988877 + . ID=CGI_10018694; scaffold368 GLEAN promoter 62730 63729 0.988335 - . ID=CGI_10018693; scaffold368 TRF Tandem_Repeat 64489 64536 96 + . . scaffold368 GLEAN promoter 68653 69652 1 + . ID=CGI_10018695; scaffold368 GLEAN mRNA 69653 72261 1 + . ID=CGI_10018695; scaffold368 TRF Tandem_Repeat 71109 71198 166 + . . scaffold368 GLEAN mRNA 78208 92005 0.999415 - . ID=CGI_10018696; scaffold368 TRF Tandem_Repeat 87474 87527 108 + . . scaffold368 WUBlastX DNA_Kolobok-IS4 88119 88631 54 + . . scaffold368 WUBlastX DNA_IS4EU 88281 88631 59 + . . scaffold368 WUBlastX DNA_IS4EU 89028 89342 46 + . . scaffold368 WUBlastX DNA_IS4EU 89082 90041 65 + . . scaffold368 WUBlastX DNA_IS4EU 89322 90167 149 + . . scaffold368 WUBlastX DNA_Kolobok-IS4 89505 90167 178 + . . scaffold368 TRF Tandem_Repeat 90390 90428 60 + . . scaffold368 WUBlastX DNA_IS4EU 90561 91697 556 - . . scaffold368 GLEAN promoter 92006 93005 0.999415 - . ID=CGI_10018696; scaffold368 WUBlastX DNA_IS4EU 92305 92562 29 - . . scaffold368 TRF Tandem_Repeat 103609 103843 323 + . . scaffold368 TRF Tandem_Repeat 104091 104365 326 + . . scaffold368 TRF Tandem_Repeat 104091 104365 344 + . . scaffold368 TRF Tandem_Repeat 104113 104386 404 + . . scaffold368 TRF Tandem_Repeat 104213 104293 60 + . . scaffold368 GLEAN mRNA 107278 116313 0.999986 - . ID=CGI_10018697; scaffold368 GLEAN promoter 116314 117313 0.999986 - . ID=CGI_10018697; scaffold368 TRF Tandem_Repeat 116751 116803 106 + . . scaffold368 GLEAN mRNA 118524 119209 1 - . ID=CGI_10018698; scaffold368 GLEAN promoter 119210 120209 1 - . ID=CGI_10018698; scaffold368 GLEAN mRNA 121375 124326 0.865636 - . ID=CGI_10018699; scaffold368 GLEAN promoter 124327 125326 0.865636 - . ID=CGI_10018699; scaffold368 WUBlastX LINE_RTE-X 127585 127923 111 + . . scaffold368 GLEAN promoter 130156 131155 1 + . ID=CGI_10018700; scaffold368 GLEAN mRNA 131156 137198 1 + . ID=CGI_10018700; scaffold368 TRF Tandem_Repeat 131502 131572 142 + . . scaffold368 TRF Tandem_Repeat 131570 131594 50 + . . scaffold368 TRF Tandem_Repeat 131966 132042 138 + . . scaffold368 TRF Tandem_Repeat 133860 133896 74 + . . scaffold368 TRF Tandem_Repeat 135146 135191 85 + . . scaffold368 TRF Tandem_Repeat 137904 137950 94 + . . scaffold368 TRF Tandem_Repeat 137990 138046 100 + . . scaffold368 TRF Tandem_Repeat 140518 140577 120 + . . scaffold368 TRF Tandem_Repeat 140577 140609 66 + . . scaffold368 TRF Tandem_Repeat 142182 142228 85 + . . scaffold368 TRF Tandem_Repeat 147571 147625 110 + . . scaffold368 GLEAN promoter 149256 150255 0.937384 + . ID=CGI_10018701; scaffold368 GLEAN mRNA 150256 160112 0.937384 + . ID=CGI_10018701; scaffold368 TRF Tandem_Repeat 163053 163335 208 + . . scaffold368 TRF Tandem_Repeat 163059 163309 178 + . . scaffold368 TRF Tandem_Repeat 164891 164939 98 + . . scaffold368 GLEAN mRNA 169109 169594 0.649599 - . ID=CGI_10018702; scaffold368 GLEAN promoter 169595 170594 0.649599 - . ID=CGI_10018702; scaffold368 WUBlastX LINE_CR1 171381 171461 61 + . . scaffold368 TRF Tandem_Repeat 171650 171723 148 + . . scaffold368 WUBlastX LINE_CR1 172728 173201 137 + . . scaffold368 WUBlastX LINE_CR1 172890 173201 141 + . . scaffold368 WUBlastX LINE_CR1 172941 173189 161 + . . scaffold368 WUBlastX LINE_CR1 172944 173333 129 + . . scaffold368 TRF Tandem_Repeat 173663 173715 106 + . . scaffold368 TRF Tandem_Repeat 174744 174796 106 + . . scaffold368 WUBlastX LINE_CR1 176167 176613 104 + . . scaffold368 WUBlastX LINE_CR1 176311 176658 139 + . . scaffold368 WUBlastX LINE_CR1 176377 176661 184 + . . scaffold368 WUBlastX LINE_CR1 176380 176727 161 + . . scaffold368 WUBlastX LINE_CR1 176663 176947 129 + . . scaffold368 TRF Tandem_Repeat 181253 181300 96 + . . scaffold368 TRF Tandem_Repeat 194116 194152 74 + . . scaffold368 GLEAN promoter 199026 200025 0.992076 + . ID=CGI_10018703; scaffold368 GLEAN mRNA 200026 213347 0.992076 + . ID=CGI_10018703; scaffold368 GLEAN promoter 213957 214956 0.999995 + . ID=CGI_10018704; scaffold368 GLEAN mRNA 214957 216024 0.999995 + . ID=CGI_10018704; scaffold368 GLEAN mRNA 218139 218698 1 - . ID=CGI_10018705; scaffold368 GLEAN promoter 218699 219698 1 - . ID=CGI_10018705; scaffold368 TRF Tandem_Repeat 219340 219390 102 + . . scaffold368 TRF Tandem_Repeat 222267 222328 124 + . . scaffold368 GLEAN mRNA 225329 227477 0.907855 - . ID=CGI_10018706; scaffold368 GLEAN promoter 227478 228477 0.907855 - . ID=CGI_10018706; scaffold368 TRF Tandem_Repeat 228217 228274 107 + . . scaffold368 TRF Tandem_Repeat 238927 238992 123 + . . scaffold368 GLEAN promoter 241727 242726 0.981532 + . ID=CGI_10018707; scaffold368 GLEAN mRNA 242727 245149 0.981532 + . ID=CGI_10018707; scaffold368 TRF Tandem_Repeat 246195 246226 64 + . . scaffold368 TRF Tandem_Repeat 254216 255239 1384 + . . scaffold368 TRF Tandem_Repeat 256366 256455 98 + . . scaffold368 TRF Tandem_Repeat 257287 257390 93 + . . scaffold368 TRF Tandem_Repeat 257747 257780 68 + . . scaffold368 TRF Tandem_Repeat 261858 261895 67 + . . scaffold368 TRF Tandem_Repeat 263514 263547 68 + . . scaffold368 GLEAN promoter 288601 289600 0.91193 + . ID=CGI_10018708; scaffold368 GLEAN mRNA 289601 290621 0.91193 + . ID=CGI_10018708; scaffold368 WUBlastX LTR_Gypsy? 295067 295456 78 + . . scaffold368 GLEAN promoter 297135 298134 0.55532 + . ID=CGI_10018709; scaffold368 GLEAN mRNA 298135 299885 0.55532 + . ID=CGI_10018709; scaffold368 GLEAN mRNA 306309 308636 1 - . ID=CGI_10018710; scaffold368 GLEAN promoter 308637 309636 1 - . ID=CGI_10018710; scaffold368 GLEAN mRNA 313751 316494 1 - . ID=CGI_10018711; scaffold368 GLEAN promoter 316495 317494 1 - . ID=CGI_10018711; scaffold368 TRF Tandem_Repeat 336498 336550 106 + . . scaffold368 TRF Tandem_Repeat 340296 340333 76 + . . scaffold368 GLEAN promoter 342749 343748 0.999624 + . ID=CGI_10018712; scaffold368 GLEAN mRNA 343749 373643 0.999624 + . ID=CGI_10018712; scaffold368 TRF Tandem_Repeat 355384 355424 82 + . . scaffold368 TRF Tandem_Repeat 357336 357460 164 + . . scaffold368 GLEAN promoter 377799 378798 0.999661 + . ID=CGI_10018713; scaffold368 GLEAN mRNA 378799 380316 0.999661 + . ID=CGI_10018713; scaffold368 WUBlastX DNA_Harbinger 385197 385415 96 + . . scaffold368 WUBlastX DNA_Harbinger 385864 386286 77 + . . scaffold368 WUBlastX DNA_Harbinger 385864 386220 389 + . . scaffold368 TRF Tandem_Repeat 386419 386476 116 + . . scaffold368 WUBlastX DNA_Harbinger 387295 387786 337 + . . scaffold368 TRF Tandem_Repeat 389107 389151 90 + . . scaffold368 WUBlastX DNA_Harbinger 391120 391524 245 - . . scaffold368 TRF Tandem_Repeat 400158 400201 88 + . . scaffold368 TRF Tandem_Repeat 404565 404612 96 + . . scaffold368 TRF Tandem_Repeat 406226 406389 301 + . . scaffold368 TRF Tandem_Repeat 411350 411392 86 + . . scaffold368 WUBlastX DNA_TcMar-Tc1 411856 412383 20 + . . scaffold368 WUBlastX DNA_TcMar-Tc1 411946 412383 74 + . . scaffold368 WUBlastX LTR_Pao 412726 413091 147 - . . scaffold368 TRF Tandem_Repeat 413865 413907 79 + . . scaffold368 TRF Tandem_Repeat 414847 414880 68 + . . scaffold368 WUBlastX LTR_Pao 415694 416260 131 - . . scaffold368 WUBlastX LTR_Pao 415781 416290 253 - . . scaffold368 WUBlastX LTR_Pao 416251 417645 247 - . . scaffold368 WUBlastX LTR_Pao 417184 418095 232 - . . scaffold368 WUBlastX LTR_Pao 418071 418373 144 - . . scaffold368 WUBlastX LTR_Pao 418355 418624 127 - . . scaffold368 WUBlastX LTR_Pao 418617 418676 22 - . . scaffold368 WUBlastX LTR_Pao 418750 418998 140 - . . scaffold368 WUBlastX LTR_Pao 418804 419049 25 - . . scaffold368 WUBlastX LTR_Pao 419063 419212 20 - . . scaffold368 WUBlastX LTR_Pao 419416 419526 26 - . . scaffold368 TRF Tandem_Repeat 421593 421641 98 + . . scaffold368 WUBlastX LTR_Pao 424343 424462 59 - . . scaffold368 WUBlastX LTR_Pao 424546 424884 35 - . . scaffold368 WUBlastX LTR_Pao 424651 424932 56 - . . scaffold368 WUBlastX LTR_Pao 424812 425084 83 - . . scaffold368 WUBlastX LTR_Pao 424869 425084 91 - . . scaffold368 WUBlastX LTR_Pao 424908 425084 113 - . . scaffold368 WUBlastX LTR_Pao 425797 426060 66 - . . scaffold368 TRF Tandem_Repeat 426905 426970 69 + . . scaffold368 TRF Tandem_Repeat 426905 426961 96 + . . scaffold368 TRF Tandem_Repeat 426963 427030 59 + . . scaffold368 TRF Tandem_Repeat 426976 427030 69 + . . scaffold368 TRF Tandem_Repeat 426988 427031 74 + . . scaffold368 TRF Tandem_Repeat 427043 427073 62 + . . scaffold368 TRF Tandem_Repeat 434836 435231 423 + . . scaffold368 TRF Tandem_Repeat 435315 435866 290 + . . scaffold368 TRF Tandem_Repeat 436217 436768 290 + . . scaffold368 WUBlastX LTR_Gypsy 436774 437220 73 + . . scaffold368 WUBlastX LTR_Gypsy 436879 437241 152 + . . scaffold368 WUBlastX LTR_Gypsy-Cigr 436906 437202 198 + . . scaffold368 WUBlastX LTR_Gypsy 437270 437677 31 + . . scaffold368 WUBlastX LTR_Gypsy 437495 437653 47 + . . scaffold368 WUBlastX LTR_Gypsy-Cigr 437519 437689 49 + . . scaffold368 WUBlastX LTR_Gypsy 437519 437731 45 + . . scaffold368 WUBlastX LTR_Gypsy-Cigr 437724 438209 63 + . . scaffold368 TRF Tandem_Repeat 440134 440177 58 + . . scaffold368 TRF Tandem_Repeat 440136 440172 56 + . . scaffold368 WUBlastX LINE_Penelope 441126 441734 143 - . . scaffold368 WUBlastX LINE_Penelope 441536 443020 268 - . . scaffold368 WUBlastX LINE_Penelope 441704 442936 430 - . . scaffold368 TRF Tandem_Repeat 445435 445479 72 + . . scaffold368 TRF Tandem_Repeat 455582 455661 151 + . . scaffold368 GLEAN promoter 455734 456733 0.348019 + . ID=CGI_10018714; scaffold368 GLEAN mRNA 456734 493375 0.348019 + . ID=CGI_10018714; scaffold368 TRF Tandem_Repeat 466913 466987 136 + . . scaffold368 WUBlastX LTR_Copia 487601 487693 24 - . . scaffold368 WUBlastX LTR_Gypsy 487684 489363 1076 - . . scaffold368 WUBlastX LTR_Gypsy-Cigr 487831 489936 1059 - . . scaffold368 WUBlastX LTR_Gypsy 489954 491180 421 - . . scaffold368 WUBlastX LTR_Gypsy 489963 490874 780 - . . scaffold368 WUBlastX LTR_Gypsy 490933 491892 212 - . . scaffold368 WUBlastX LTR_Gypsy 492032 492805 204 - . . scaffold368 WUBlastX LINE_Penelope 494952 496040 480 - . . scaffold368 WUBlastX LINE_Penelope 496043 496222 105 - . . scaffold368 WUBlastX LINE_Penelope 498344 498757 76 - . . scaffold368 TRF Tandem_Repeat 500012 500049 51 + . . scaffold368 WUBlastX DNA_Harbinger 511970 512143 25 + . . scaffold368 WUBlastX DNA_Harbinger 512142 512915 37 + . . scaffold368 WUBlastX DNA_Harbinger 512157 512735 225 + . . scaffold368 TRF Tandem_Repeat 516626 516663 67 + . . scaffold368 TRF Tandem_Repeat 516961 517051 119 + . . scaffold368 TRF Tandem_Repeat 546938 547033 81 + . . scaffold368 GLEAN promoter 549943 550942 0.618241 + . ID=CGI_10018715; scaffold368 GLEAN mRNA 550943 551533 0.618241 + . ID=CGI_10018715; scaffold368 GLEAN mRNA 552655 557427 1 - . ID=CGI_10018716; scaffold368 GLEAN promoter 557428 558427 1 - . ID=CGI_10018716; scaffold368 WUBlastX LINE_RTE-X 559713 559967 33 - . . scaffold368 WUBlastX LINE_RTE-X 559758 559967 34 - . . scaffold368 WUBlastX LINE_RTE-X 559818 559967 39 - . . scaffold368 WUBlastX LINE_RTE-X 559966 560349 112 - . . scaffold368 WUBlastX LTR_Pao 560416 563400 1903 + . . scaffold36802 GLEAN promoter 1993 2992 0.649473 + . ID=CGI_10002073; scaffold36802 WUBlastX DNA_Academ 2981 3289 29 + . . scaffold36802 GLEAN mRNA 2993 3328 0.649473 + . ID=CGI_10002073; scaffold36802 WUBlastX DNA_Academ 3272 3511 86 + . . scaffold36802 WUBlastX DNA_Academ 3517 3747 33 + . . scaffold36802 WUBlastX DNA_Academ 3538 3729 63 + . . scaffold36802 WUBlastX DNA_MuDR 16008 16280 70 + . . scaffold36802 WUBlastX DNA_MuDR 16056 16280 108 + . . scaffold36802 TRF Tandem_Repeat 18808 18834 54 + . . scaffold36802 GLEAN promoter 34535 35534 0.6496 + . ID=CGI_10002074; scaffold36802 GLEAN mRNA 35535 35765 0.6496 + . ID=CGI_10002074; scaffold36806 TRF Tandem_Repeat 146 185 62 + . . scaffold36806 WUBlastX LINE_RTE-BovB 1019 1213 51 + . . scaffold36806 WUBlastX LINE_RTE-BovB 1067 1213 62 + . . scaffold36806 WUBlastX LINE_RTE-BovB 1094 1213 64 + . . scaffold36806 WUBlastX LINE_RTE-BovB 1192 1437 125 + . . scaffold36806 WUBlastX LINE_RTE-BovB 1213 1479 81 + . . scaffold36806 TRF Tandem_Repeat 8712 8742 62 + . . scaffold36806 WUBlastX LINE_L1-Tx1 12146 12907 111 - . . scaffold36806 WUBlastX LINE_L1 12266 12910 142 - . . scaffold36806 WUBlastX LINE_L1-Tx1 12410 12907 236 - . . scaffold36806 WUBlastX LINE_L1-Tx1 12900 13139 160 - . . scaffold36806 WUBlastX LINE_L1-Tx1 13135 13692 251 - . . scaffold36806 WUBlastX LINE_L1-Tx1 13141 13845 98 - . . scaffold36806 WUBlastX LTR_Gypsy 13756 14052 41 + . . scaffold36806 WUBlastX LTR_Gypsy 13756 13995 75 + . . scaffold36806 TRF Tandem_Repeat 14058 14132 70 + . . scaffold36806 TRF Tandem_Repeat 14079 14136 80 + . . scaffold36806 TRF Tandem_Repeat 16982 17022 82 + . . scaffold36806 WUBlastX LINE_Penelope 18522 18833 29 - . . scaffold36806 WUBlastX LINE_Penelope 18769 19347 115 - . . scaffold36806 WUBlastX LINE_Penelope 18889 19347 216 - . . scaffold36806 GLEAN promoter 21975 22974 0.994851 + . ID=CGI_10002150; scaffold36806 GLEAN mRNA 22975 34393 0.994851 + . ID=CGI_10002150; scaffold36806 WUBlastX LTR_Ngaro 24091 24990 415 + . . scaffold36806 WUBlastX LTR_Ngaro 25022 25216 51 + . . scaffold36806 WUBlastX LTR_Ngaro 25141 25236 27 + . . scaffold36806 TRF Tandem_Repeat 35434 35460 54 + . . scaffold36808 GLEAN mRNA 630 10745 0.703847 - . ID=CGI_10002145; scaffold36808 WUBlastX LTR_ERV1 1481 1654 23 + . . scaffold36808 TRF Tandem_Repeat 2936 2986 102 + . . scaffold36808 TRF Tandem_Repeat 9162 9188 54 + . . scaffold36808 GLEAN promoter 10746 11745 0.703847 - . ID=CGI_10002145; scaffold36808 GLEAN mRNA 25253 26399 0.99999 - . ID=CGI_10002146; scaffold36808 GLEAN promoter 26400 27399 0.99999 - . ID=CGI_10002146; scaffold36808 GLEAN mRNA 30018 36587 1 - . ID=CGI_10002147; scaffold36808 WUBlastX LINE_RTE-X 35334 35486 33 + . . scaffold36808 WUBlastX LINE_RTE-X 35346 35549 29 + . . scaffold36808 WUBlastX LINE_RTE-X 35358 35486 40 + . . scaffold36808 GLEAN promoter 36588 37587 1 - . ID=CGI_10002147; scaffold36812 GLEAN promoter 2475 3474 0.99984 + . ID=CGI_10002143; scaffold36812 GLEAN mRNA 3475 12188 0.99984 + . ID=CGI_10002143; scaffold36816 TRF Tandem_Repeat 182 717 756 + . . scaffold36816 WUBlastX LINE_RTE-BovB 872 1429 72 + . . scaffold36816 WUBlastX LINE_L1-Tx1 989 1702 526 + . . scaffold36816 WUBlastX LINE_L1 1001 1942 234 + . . scaffold36816 WUBlastX LINE_L2 6877 7203 39 + . . scaffold36816 WUBlastX LINE_L2 6907 7113 45 + . . scaffold36816 WUBlastX LINE_L2 6946 7119 47 + . . scaffold36816 WUBlastX LINE_L2 7158 7694 137 + . . scaffold36816 WUBlastX LINE_L2 7248 7700 202 + . . scaffold36816 TRF Tandem_Repeat 9489 10024 745 + . . scaffold36816 TRF Tandem_Repeat 12048 12102 65 + . . scaffold36816 TRF Tandem_Repeat 12048 12106 109 + . . scaffold36816 TRF Tandem_Repeat 12114 13057 1318 + . . scaffold36816 WUBlastX LINE_L1-Tx1 16656 16811 83 - . . scaffold36816 WUBlastX LINE_L1-Tx1 18727 18990 70 - . . scaffold36816 TRF Tandem_Repeat 20293 21336 1017 + . . scaffold36816 GLEAN mRNA 22092 22481 0.999068 - . ID=CGI_10002144; scaffold36816 GLEAN promoter 22482 23481 0.999068 - . ID=CGI_10002144; scaffold36816 TRF Tandem_Repeat 24428 24483 71 + . . scaffold36816 TRF Tandem_Repeat 24432 24486 65 + . . scaffold36816 TRF Tandem_Repeat 37136 37220 93 + . . scaffold36848 TRF Tandem_Repeat 898 2045 1455 + . . scaffold36848 GLEAN mRNA 4179 14848 0.617315 - . ID=CGI_10002148; scaffold36848 TRF Tandem_Repeat 12885 12915 53 + . . scaffold36848 GLEAN promoter 14849 15848 0.617315 - . ID=CGI_10002148; scaffold36848 TRF Tandem_Repeat 16665 16704 57 + . . scaffold36848 TRF Tandem_Repeat 17925 17965 82 + . . scaffold36848 TRF Tandem_Repeat 21460 21508 89 + . . scaffold36848 TRF Tandem_Repeat 21702 21750 98 + . . scaffold36848 GLEAN promoter 23876 24875 0.951367 + . ID=CGI_10002149; scaffold36848 GLEAN mRNA 24876 29129 0.951367 + . ID=CGI_10002149; scaffold36848 WUBlastX DNA_PiggyBac 33279 33746 247 - . . scaffold36850 GLEAN promoter 2211 3210 0.544852 + . ID=CGI_10002163; scaffold36850 GLEAN mRNA 3211 5259 0.544852 + . ID=CGI_10002163; scaffold36850 WUBlastX LINE_L2 6465 6971 21 - . . scaffold36850 WUBlastX LINE_CR1 6591 6971 80 - . . scaffold36850 GLEAN promoter 13070 14069 0.776639 + . ID=CGI_10002164; scaffold36850 GLEAN mRNA 14070 14516 0.776639 + . ID=CGI_10002164; scaffold36850 GLEAN mRNA 17242 23441 0.911658 - . ID=CGI_10002165; scaffold36850 GLEAN promoter 23442 24441 0.911658 - . ID=CGI_10002165; scaffold36850 GLEAN promoter 29191 30190 1 + . ID=CGI_10002166; scaffold36850 GLEAN mRNA 30191 33624 1 + . ID=CGI_10002166; scaffold36850 GLEAN mRNA 34509 36396 0.702157 - . ID=CGI_10002167; scaffold36850 GLEAN promoter 36397 37396 0.702157 - . ID=CGI_10002167; scaffold36854 GLEAN promoter 1 21 1 + . ID=CGI_10002154; scaffold36854 GLEAN mRNA 22 2628 1 + . ID=CGI_10002154; scaffold36854 GLEAN mRNA 3582 5051 1 - . ID=CGI_10002155; scaffold36854 GLEAN promoter 5052 6051 1 - . ID=CGI_10002155; scaffold36858 GLEAN promoter 1 909 0.993225 + . ID=CGI_10002170; scaffold36858 GLEAN mRNA 910 4130 0.993225 + . ID=CGI_10002170; scaffold36858 GLEAN promoter 10004 11003 1 + . ID=CGI_10002171; scaffold36858 GLEAN mRNA 11004 12212 1 + . ID=CGI_10002171; scaffold36862 GLEAN mRNA 4895 5107 0.866433 - . ID=CGI_10002158; scaffold36862 GLEAN promoter 5108 6107 0.866433 - . ID=CGI_10002158; scaffold36862 WUBlastX DNA_En-Spm 5228 5956 143 - . . scaffold36862 WUBlastX DNA_En-Spm 5513 5956 148 - . . scaffold36862 WUBlastX DNA_En-Spm 5513 6367 141 - . . scaffold36862 WUBlastX DNA_En-Spm 7090 7209 43 - . . scaffold36862 WUBlastX DNA_En-Spm 7762 7959 61 - . . scaffold36862 GLEAN mRNA 7967 10848 1 - . ID=CGI_10002159; scaffold36862 GLEAN promoter 10849 11848 1 - . ID=CGI_10002159; scaffold36862 TRF Tandem_Repeat 11525 11774 326 + . . scaffold36862 GLEAN mRNA 12510 18011 0.84036 - . ID=CGI_10002160; scaffold36862 GLEAN promoter 18012 19011 0.84036 - . ID=CGI_10002160; scaffold36862 TRF Tandem_Repeat 18945 18974 60 + . . scaffold36862 GLEAN promoter 20408 21407 0.999569 + . ID=CGI_10002161; scaffold36862 GLEAN mRNA 21408 25552 0.999569 + . ID=CGI_10002161; scaffold36862 TRF Tandem_Repeat 24442 24489 96 + . . scaffold36862 TRF Tandem_Repeat 30071 30175 156 + . . scaffold36862 GLEAN promoter 36040 37039 1 + . ID=CGI_10002162; scaffold36862 GLEAN mRNA 37040 37771 1 + . ID=CGI_10002162; scaffold36862 WUBlastX LTR_DIRS 37142 37768 113 + . . scaffold36862 WUBlastX LTR_DIRS 37722 38585 415 + . . scaffold36866 TRF Tandem_Repeat 5235 5342 98 + . . scaffold36866 TRF Tandem_Repeat 8763 8800 67 + . . scaffold36866 TRF Tandem_Repeat 8800 8831 64 + . . scaffold36866 TRF Tandem_Repeat 11726 13640 2537 + . . scaffold36866 TRF Tandem_Repeat 13803 13840 51 + . . scaffold36866 WUBlastX LINE_Penelope 23570 23857 72 - . . scaffold36866 GLEAN promoter 27052 28051 0.999998 + . ID=CGI_10002181; scaffold36866 TRF Tandem_Repeat 27392 27439 96 + . . scaffold36866 GLEAN mRNA 28052 30280 0.999998 + . ID=CGI_10002181; scaffold36866 WUBlastX LTR_DIRS 33515 33895 180 + . . scaffold36866 WUBlastX LTR_DIRS 34262 34861 254 + . . scaffold36872 TRF Tandem_Repeat 6045 6126 103 + . . scaffold36872 TRF Tandem_Repeat 6046 6123 122 + . . scaffold36872 WUBlastX LTR_Gypsy 9496 9585 23 + . . scaffold36872 WUBlastX LTR_Gypsy 9627 9974 22 + . . scaffold36872 WUBlastX LTR_Gypsy 9645 9788 42 + . . scaffold36872 WUBlastX LTR_Gypsy 9890 10012 20 + . . scaffold36872 WUBlastX LTR_Gypsy 10058 10468 80 + . . scaffold36872 WUBlastX LTR_Gypsy 10157 10420 101 + . . scaffold36872 WUBlastX LTR_Gypsy 10172 10468 97 + . . scaffold36872 WUBlastX LTR_Gypsy 10217 10513 71 + . . scaffold36872 WUBlastX LTR_Gypsy 10525 10836 102 + . . scaffold36872 WUBlastX LTR_Gypsy 10537 10896 84 + . . scaffold36872 WUBlastX LTR_Gypsy 10889 11185 42 + . . scaffold36872 WUBlastX LTR_Gypsy 10913 11122 55 + . . scaffold36872 WUBlastX LTR_Gypsy 11265 11465 26 + . . scaffold36872 WUBlastX LTR_Gypsy 11319 11465 54 + . . scaffold36872 WUBlastX LTR_Gypsy 11340 11507 34 + . . scaffold36872 WUBlastX LTR_Gypsy 11467 11577 29 + . . scaffold36872 TRF Tandem_Repeat 12372 12405 50 + . . scaffold36872 TRF Tandem_Repeat 12375 12418 70 + . . scaffold36872 WUBlastX LINE_RTE-X 18053 18274 39 - . . scaffold36872 WUBlastX LINE_RTE-X 18062 18235 49 - . . scaffold36872 WUBlastX LINE_RTE-X 18603 18827 43 - . . scaffold36872 WUBlastX LINE_RTE-X 18633 18821 50 - . . scaffold36872 WUBlastX LINE_RTE-X 18645 18944 42 - . . scaffold36872 WUBlastX LINE_RTE-X 20372 21247 25 - . . scaffold36872 WUBlastX LINE_RTE-X 20513 21247 87 - . . scaffold36872 WUBlastX LINE_RTE-X 20969 21340 64 - . . scaffold36872 WUBlastX LINE_L2 21820 22167 93 - . . scaffold36872 WUBlastX LINE_L2 21868 22275 49 - . . scaffold36872 WUBlastX DNA_TcMar-Marin 27058 27462 240 - . . scaffold36872 WUBlastX DNA_TcMar-Marin 27653 28318 352 - . . scaffold36886 TRF Tandem_Repeat 4773 5863 1132 + . . scaffold36886 TRF Tandem_Repeat 6479 6667 145 + . . scaffold36886 TRF Tandem_Repeat 6480 6613 103 + . . scaffold36886 TRF Tandem_Repeat 6487 6618 123 + . . scaffold36886 TRF Tandem_Repeat 6505 6918 318 + . . scaffold36886 TRF Tandem_Repeat 6547 6961 474 + . . scaffold36886 TRF Tandem_Repeat 6547 6959 336 + . . scaffold36886 TRF Tandem_Repeat 6595 6961 380 + . . scaffold36886 TRF Tandem_Repeat 6652 6961 128 + . . scaffold36886 TRF Tandem_Repeat 6676 6903 64 + . . scaffold36886 WUBlastX RC_Helitron 7145 7981 154 + . . scaffold36886 WUBlastX RC_Helitron 7331 7972 240 + . . scaffold36886 WUBlastX RC_Helitron 7430 8287 228 + . . scaffold36886 WUBlastX RC_Helitron 8171 9385 228 + . . scaffold36886 WUBlastX RC_Helitron 8951 14548 3671 + . . scaffold36886 WUBlastX LINE_L2 15300 15449 21 + . . scaffold36886 TRF Tandem_Repeat 22390 22609 318 + . . scaffold36886 TRF Tandem_Repeat 26089 26162 84 + . . scaffold36886 TRF Tandem_Repeat 26091 26171 87 + . . scaffold36898 GLEAN mRNA 700 1422 0.573259 - . ID=CGI_10002175; scaffold36898 WUBlastX LTR_Pao 709 810 112 + . . scaffold36898 WUBlastX LTR_Pao 712 837 110 + . . scaffold36898 GLEAN promoter 1423 2422 0.573259 - . ID=CGI_10002175; scaffold36898 WUBlastX DNA_hAT-Tip100 2431 2793 95 - . . scaffold36898 WUBlastX DNA_hAT-Tip100 2533 4779 1041 - . . scaffold36898 WUBlastX DNA_hAT-Tip100 3502 5037 195 - . . scaffold36898 WUBlastX DNA_Maverick 10966 11595 38 + . . scaffold36898 WUBlastX DNA_Maverick 11855 12061 133 - . . scaffold36898 WUBlastX DNA_Maverick 12063 12479 226 - . . scaffold36898 WUBlastX DNA_Maverick 12494 12583 57 - . . scaffold36898 WUBlastX DNA_Maverick 12586 12819 47 - . . scaffold36898 GLEAN promoter 15010 16009 0.999999 + . ID=CGI_10002176; scaffold36898 GLEAN mRNA 16010 17199 0.999999 + . ID=CGI_10002176; scaffold36898 TRF Tandem_Repeat 16232 16271 80 + . . scaffold36898 GLEAN promoter 16938 17937 0.992857 + . ID=CGI_10002177; scaffold36898 WUBlastX DNA_Maverick 17339 17662 92 + . . scaffold36898 GLEAN mRNA 17938 18680 0.992857 + . ID=CGI_10002177; scaffold36898 WUBlastX LINE_RTE-X 19394 19471 32 + . . scaffold36898 WUBlastX LINE_RTE-X 19644 19913 86 + . . scaffold36898 WUBlastX LINE_RTE-X 19963 20037 46 + . . scaffold36898 WUBlastX LINE_L1-Tx1 24441 24914 48 + . . scaffold36898 WUBlastX LINE_L1-Tx1 24471 24659 59 + . . scaffold36898 WUBlastX DNA_TcMar-Tc2 27155 27706 94 + . . scaffold36898 WUBlastX DNA_TcMar-Tc2 27224 27670 97 + . . scaffold36898 WUBlastX LINE_L2 37539 37805 56 + . . scaffold36898 WUBlastX LINE_L2 37708 38073 79 + . . scaffold36898 WUBlastX LINE_L2 37783 38127 102 + . . scaffold36898 WUBlastX LINE_L2 37813 38073 115 + . . scaffold36898 WUBlastX LINE_L1-Tx1 38440 38724 176 + . . scaffold369 GLEAN mRNA 1987 4435 0.999572 - . ID=CGI_10006946; scaffold369 GLEAN promoter 4436 5435 0.999572 - . ID=CGI_10006946; scaffold369 TRF Tandem_Repeat 5750 5792 86 + . . scaffold369 TRF Tandem_Repeat 8157 8202 92 + . . scaffold369 WUBlastX LINE_CR1 27606 27719 65 + . . scaffold369 TRF Tandem_Repeat 29016 29063 80 + . . scaffold369 GLEAN promoter 30917 31916 1 + . ID=CGI_10006947; scaffold369 GLEAN mRNA 31917 34008 1 + . ID=CGI_10006947; scaffold369 TRF Tandem_Repeat 41091 41132 84 + . . scaffold369 GLEAN mRNA 42196 43972 0.998734 - . ID=CGI_10006948; scaffold369 GLEAN promoter 43973 44972 0.998734 - . ID=CGI_10006948; scaffold369 GLEAN mRNA 44422 46265 0.998837 - . ID=CGI_10006949; scaffold369 GLEAN promoter 45444 46443 0.996818 + . ID=CGI_10006950; scaffold369 GLEAN promoter 46266 47265 0.998837 - . ID=CGI_10006949; scaffold369 GLEAN mRNA 46444 54103 0.996818 + . ID=CGI_10006950; scaffold369 GLEAN mRNA 55944 60341 1 - . ID=CGI_10006951; scaffold369 GLEAN promoter 60342 61341 1 - . ID=CGI_10006951; scaffold369 GLEAN mRNA 73539 84015 0.893641 - . ID=CGI_10006952; scaffold369 TRF Tandem_Repeat 77348 77415 86 + . . scaffold369 TRF Tandem_Repeat 83418 83451 68 + . . scaffold369 GLEAN promoter 84016 85015 0.893641 - . ID=CGI_10006952; scaffold369 TRF Tandem_Repeat 85354 85389 72 + . . scaffold369 TRF Tandem_Repeat 85389 85436 96 + . . scaffold369 GLEAN promoter 88525 89524 0.999995 + . ID=CGI_10006953; scaffold369 GLEAN mRNA 89525 99433 0.999995 + . ID=CGI_10006953; scaffold369 GLEAN mRNA 93231 94697 0.531613 - . ID=CGI_10006954; scaffold369 GLEAN promoter 94698 95697 0.531613 - . ID=CGI_10006954; scaffold369 GLEAN promoter 98454 99453 0.811509 + . ID=CGI_10006955; scaffold369 TRF Tandem_Repeat 98983 99018 72 + . . scaffold369 GLEAN mRNA 99454 112466 0.811509 + . ID=CGI_10006955; scaffold369 TRF Tandem_Repeat 106838 106946 154 + . . scaffold369 TRF Tandem_Repeat 108498 108530 66 + . . scaffold369 TRF Tandem_Repeat 115584 115638 110 + . . scaffold369 GLEAN promoter 115794 116793 0.558395 + . ID=CGI_10006956; scaffold369 GLEAN mRNA 116794 117580 0.558395 + . ID=CGI_10006956; scaffold369 TRF Tandem_Repeat 121167 121250 168 + . . scaffold369 TRF Tandem_Repeat 124807 124875 106 + . . scaffold369 GLEAN promoter 125969 126968 0.392199 + . ID=CGI_10006957; scaffold369 GLEAN mRNA 126969 132291 0.392199 + . ID=CGI_10006957; scaffold369 TRF Tandem_Repeat 128305 128404 150 + . . scaffold369 TRF Tandem_Repeat 128367 128412 67 + . . scaffold369 GLEAN promoter 146278 147277 0.70167 + . ID=CGI_10006958; scaffold369 GLEAN mRNA 147278 163434 0.70167 + . ID=CGI_10006958; scaffold369 TRF Tandem_Repeat 149938 150074 148 + . . scaffold369 TRF Tandem_Repeat 151237 151284 69 + . . scaffold369 WUBlastX LINE_Penelope 161489 161947 30 + . . scaffold369 WUBlastX LINE_Penelope 161507 161893 31 + . . scaffold369 WUBlastX LINE_Penelope 161627 161860 42 + . . scaffold369 TRF Tandem_Repeat 162038 162084 94 + . . scaffold369 WUBlastX LINE_Penelope 162595 162900 123 + . . scaffold369 WUBlastX LINE_Penelope 162613 163017 21 + . . scaffold36900 GLEAN promoter 20180 21179 0.991402 + . ID=CGI_10002178; scaffold36900 GLEAN mRNA 21180 23006 0.991402 + . ID=CGI_10002178; scaffold36900 GLEAN mRNA 30510 33553 0.899715 - . ID=CGI_10002179; scaffold36900 GLEAN promoter 33130 34129 1 + . ID=CGI_10002180; scaffold36900 GLEAN promoter 33554 34553 0.899715 - . ID=CGI_10002179; scaffold36900 GLEAN mRNA 34130 37330 1 + . ID=CGI_10002180; scaffold36904 TRF Tandem_Repeat 602 667 114 + . . scaffold36904 TRF Tandem_Repeat 4314 4358 90 + . . scaffold36904 TRF Tandem_Repeat 5218 5290 146 + . . scaffold36904 TRF Tandem_Repeat 8514 8570 114 + . . scaffold36904 GLEAN mRNA 10005 31731 0.991888 - . ID=CGI_10002168; scaffold36904 TRF Tandem_Repeat 14697 14729 66 + . . scaffold36904 TRF Tandem_Repeat 17128 17296 107 + . . scaffold36904 TRF Tandem_Repeat 17128 17278 143 + . . scaffold36904 TRF Tandem_Repeat 17147 17242 66 + . . scaffold36904 TRF Tandem_Repeat 17171 17308 170 + . . scaffold36904 TRF Tandem_Repeat 17196 17326 117 + . . scaffold36904 WUBlastX LTR_Gypsy 23268 23330 22 + . . scaffold36904 TRF Tandem_Repeat 26209 26255 94 + . . scaffold36904 WUBlastX LINE_L2 26951 27760 345 - . . scaffold36904 WUBlastX LINE_CR1 28294 28404 21 - . . scaffold36904 GLEAN promoter 31732 32731 0.991888 - . ID=CGI_10002168; scaffold36904 GLEAN promoter 35080 36079 0.776794 + . ID=CGI_10002169; scaffold36904 GLEAN mRNA 36080 36238 0.776794 + . ID=CGI_10002169; scaffold36904 WUBlastX DNA_IS4EU 38012 38314 115 + . . scaffold36904 WUBlastX DNA_IS4EU 38156 38632 38 + . . scaffold36906 GLEAN promoter 1 238 0.841273 + . ID=CGI_10002185; scaffold36906 GLEAN mRNA 239 18767 0.841273 + . ID=CGI_10002185; scaffold36906 TRF Tandem_Repeat 1606 1672 71 + . . scaffold36906 TRF Tandem_Repeat 2183 2231 98 + . . scaffold36906 WUBlastX LTR_DIRS 16256 17179 416 - . . scaffold36906 WUBlastX LTR_DIRS 17139 17219 33 - . . scaffold36906 WUBlastX LTR_DIRS 17224 18072 338 - . . scaffold36906 WUBlastX LTR_DIRS 17236 17844 428 - . . scaffold36906 TRF Tandem_Repeat 34662 35606 1457 + . . scaffold36906 TRF Tandem_Repeat 36144 36170 54 + . . scaffold36906 WUBlastX LTR_Pao 37910 38881 868 - . . scaffold36916 GLEAN mRNA 1837 4712 0.940831 - . ID=CGI_10002068; scaffold36916 GLEAN promoter 4713 5712 0.940831 - . ID=CGI_10002068; scaffold36916 GLEAN mRNA 11167 28006 0.612629 - . ID=CGI_10002069; scaffold36916 GLEAN promoter 28007 29006 0.612629 - . ID=CGI_10002069; scaffold36926 GLEAN promoter 3375 4374 0.999372 + . ID=CGI_10002188; scaffold36926 GLEAN mRNA 4375 4554 0.999372 + . ID=CGI_10002188; scaffold36926 WUBlastX LTR_Pao 4674 5144 22 + . . scaffold36926 WUBlastX LTR_Pao 5237 6160 395 + . . scaffold36926 WUBlastX LTR_Pao 6186 7412 728 + . . scaffold36926 WUBlastX LTR_Pao 7414 10488 2423 + . . scaffold36926 WUBlastX LTR_Pao 10360 10551 23 + . . scaffold36926 WUBlastX LINE_RTE-X 22205 22597 176 - . . scaffold36926 WUBlastX LINE_RTE-X 22319 22702 85 - . . scaffold36926 TRF Tandem_Repeat 26908 26982 125 + . . scaffold36926 TRF Tandem_Repeat 28422 28518 167 + . . scaffold36926 TRF Tandem_Repeat 36960 37016 60 + . . scaffold36928 TRF Tandem_Repeat 1731 1797 134 + . . scaffold36928 GLEAN promoter 1995 2994 0.558395 + . ID=CGI_10002192; scaffold36928 TRF Tandem_Repeat 2453 2528 152 + . . scaffold36928 GLEAN mRNA 2995 3636 0.558395 + . ID=CGI_10002192; scaffold36928 TRF Tandem_Repeat 8719 8759 75 + . . scaffold36928 GLEAN promoter 9005 10004 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 9574 9610 74 + . . scaffold36928 GLEAN mRNA 10005 27567 0.983891 + . ID=CGI_10002193; scaffold36928 TRF Tandem_Repeat 11283 11337 56 + . . scaffold36928 TRF Tandem_Repeat 11284 11337 72 + . . scaffold36928 TRF Tandem_Repeat 11413 11444 64 + . . scaffold36928 TRF Tandem_Repeat 16520 16557 76 + . . scaffold36928 TRF Tandem_Repeat 20333 20365 66 + . . scaffold36928 TRF Tandem_Repeat 22429 22476 71 + . . scaffold36928 TRF Tandem_Repeat 25113 25137 50 + . . scaffold36928 TRF Tandem_Repeat 27642 27687 92 + . . scaffold36928 TRF Tandem_Repeat 29063 29108 74 + . . scaffold36928 TRF Tandem_Repeat 29063 29111 53 + . . scaffold36928 WUBlastX LINE_L1 33414 33749 33 - . . scaffold36928 WUBlastX LINE_L1-Tx1 33456 33740 215 - . . scaffold36928 WUBlastX LINE_L1-Tx1 33761 34051 133 - . . scaffold36928 WUBlastX LINE_L1 34502 35275 90 - . . scaffold36928 WUBlastX LINE_CR1-L2 34562 35215 115 - . . scaffold36928 WUBlastX LINE_L1-Tx1 35298 35327 20 + . . scaffold36928 WUBlastX LINE_L1-Tx1 35481 35735 72 + . . scaffold36928 WUBlastX LINE_L1-Tx1 35708 36889 240 + . . scaffold36928 GLEAN promoter 37080 38079 0.811718 + . ID=CGI_10002194; scaffold36928 GLEAN mRNA 38080 39262 0.811718 + . ID=CGI_10002194; scaffold36936 GLEAN mRNA 314 25498 0.932631 - . ID=CGI_10002182; scaffold36936 TRF Tandem_Repeat 6523 7078 997 + . . scaffold36936 TRF Tandem_Repeat 10626 10790 159 + . . scaffold36936 WUBlastX DNA_Crypton 14821 15573 73 - . . scaffold36936 WUBlastX DNA_Crypton 15097 15618 182 - . . scaffold36936 WUBlastX DNA_Crypton 15619 15975 107 - . . scaffold36936 WUBlastX LTR_Pao 17375 17881 283 - . . scaffold36936 WUBlastX LTR_Pao 17384 17992 37 - . . scaffold36936 WUBlastX LTR_Pao 18042 18434 55 - . . scaffold36936 WUBlastX LTR_Pao 18234 18506 28 - . . scaffold36936 WUBlastX DNA_Maverick 23613 24632 582 - . . scaffold36936 GLEAN promoter 25499 26498 0.932631 - . ID=CGI_10002182; scaffold36936 TRF Tandem_Repeat 25593 25649 105 + . . scaffold36936 TRF Tandem_Repeat 35078 35111 68 + . . scaffold36936 GLEAN mRNA 36862 38081 1 - . ID=CGI_10002184; scaffold36936 GLEAN promoter 38082 38878 1 - . ID=CGI_10002184; scaffold36940 TRF Tandem_Repeat 5827 5901 132 + . . scaffold36940 TRF Tandem_Repeat 6786 6825 62 + . . scaffold36940 GLEAN mRNA 8463 8666 0.999372 - . ID=CGI_10002186; scaffold36940 GLEAN promoter 8667 9666 0.999372 - . ID=CGI_10002186; scaffold36940 WUBlastX DNA_Harbinger 13177 13434 120 + . . scaffold36940 WUBlastX DNA_Harbinger 13198 13410 151 + . . scaffold36940 TRF Tandem_Repeat 20774 22922 2865 + . . scaffold36940 GLEAN mRNA 34772 35844 1 - . ID=CGI_10002187; scaffold36940 GLEAN promoter 35845 36844 1 - . ID=CGI_10002187; scaffold36980 GLEAN promoter 14073 15072 0.433437 + . ID=CGI_10002151; scaffold36980 GLEAN mRNA 15073 20938 0.433437 + . ID=CGI_10002151; scaffold36980 GLEAN mRNA 21956 27659 1 - . ID=CGI_10002152; scaffold36980 GLEAN promoter 27660 28659 1 - . ID=CGI_10002152; scaffold36980 GLEAN promoter 33543 34542 1 + . ID=CGI_10002153; scaffold36980 GLEAN mRNA 34543 37698 1 + . ID=CGI_10002153; scaffold36994 GLEAN promoter 694 1693 0.0225065 + . ID=CGI_10002191; scaffold36994 GLEAN mRNA 1694 38737 0.0225065 + . ID=CGI_10002191; scaffold36998 TRF Tandem_Repeat 5024 5096 146 + . . scaffold36998 GLEAN promoter 36104 37103 0.558395 + . ID=CGI_10002247; scaffold36998 GLEAN mRNA 37104 39058 0.558395 + . ID=CGI_10002247; scaffold36998 WUBlastX LINE_L1 37296 37700 28 + . . scaffold37 WUBlastX LINE_L1 1316 1714 26 - . . scaffold37 WUBlastX LINE_L1-Tx1 1415 1759 102 - . . scaffold37 WUBlastX LINE_L1-Tx1 1722 1910 81 - . . scaffold37 WUBlastX LINE_L1-Tx1 1835 2113 92 - . . scaffold37 WUBlastX LINE_L1-Tx1 1889 2182 75 - . . scaffold37 WUBlastX LINE_L1-Tx1 2180 2305 24 - . . scaffold37 TRF Tandem_Repeat 3792 3841 100 + . . scaffold37 TRF Tandem_Repeat 17945 17969 50 + . . scaffold37 TRF Tandem_Repeat 32866 32912 67 + . . scaffold37 TRF Tandem_Repeat 34008 34052 81 + . . scaffold37 TRF Tandem_Repeat 38609 38662 90 + . . scaffold37 WUBlastX DNA_MuDR 44936 45187 85 - . . scaffold37 WUBlastX DNA_MuDR 44945 45244 59 - . . scaffold37 TRF Tandem_Repeat 46267 46325 118 + . . scaffold37 WUBlastX DNA_TcMar-Marin 54171 54464 106 - . . scaffold37 TRF Tandem_Repeat 65130 65176 94 + . . scaffold37 GLEAN promoter 65785 66784 0.997729 + . ID=CGI_10010344; scaffold37 GLEAN mRNA 66785 76682 0.997729 + . ID=CGI_10010344; scaffold37 TRF Tandem_Repeat 67146 67472 166 + . . scaffold37 TRF Tandem_Repeat 67516 67642 87 + . . scaffold37 TRF Tandem_Repeat 69710 69757 96 + . . scaffold37 TRF Tandem_Repeat 69755 69799 90 + . . scaffold37 GLEAN mRNA 76488 82556 0.987448 - . ID=CGI_10010345; scaffold37 GLEAN promoter 82557 83556 0.987448 - . ID=CGI_10010345; scaffold37 TRF Tandem_Repeat 88197 88299 71 + . . scaffold37 TRF Tandem_Repeat 88197 88299 71 + . . scaffold37 TRF Tandem_Repeat 88200 88270 88 + . . scaffold37 TRF Tandem_Repeat 88317 88348 55 + . . scaffold37 TRF Tandem_Repeat 94688 94739 68 + . . scaffold37 TRF Tandem_Repeat 94696 94746 59 + . . scaffold37 TRF Tandem_Repeat 97491 97534 61 + . . scaffold37 TRF Tandem_Repeat 101872 101925 99 + . . scaffold37 TRF Tandem_Repeat 103495 103523 58 + . . scaffold37 TRF Tandem_Repeat 103905 103955 77 + . . scaffold37 WUBlastX LINE_Penelope 105729 106100 39 + . . scaffold37 WUBlastX LINE_Penelope 105732 106217 38 + . . scaffold37 WUBlastX LINE_L2 118340 118618 24 + . . scaffold37 WUBlastX LINE_RTE-X 118400 118726 74 + . . scaffold37 WUBlastX LINE_Jockey 118623 119351 94 + . . scaffold37 WUBlastX LINE_RTE-X 118746 120080 755 + . . scaffold37 WUBlastX LINE_RTE-X 120055 120498 64 + . . scaffold37 WUBlastX LINE_RTE-X 120055 120423 70 + . . scaffold37 TRF Tandem_Repeat 121406 121453 89 + . . scaffold37 TRF Tandem_Repeat 124132 124192 77 + . . scaffold37 TRF Tandem_Repeat 124807 124898 184 + . . scaffold37 TRF Tandem_Repeat 128957 129072 72 + . . scaffold37 TRF Tandem_Repeat 131966 133089 1669 + . . scaffold37 WUBlastX DNA_hAT 149428 149790 90 - . . scaffold37 WUBlastX DNA_hAT-Ac 149431 149682 103 - . . scaffold37 WUBlastX DNA_hAT-Ac 149476 149676 109 - . . scaffold37 WUBlastX LTR_Gypsy 155993 156172 75 - . . scaffold37 TRF Tandem_Repeat 156188 156314 123 + . . scaffold37 WUBlastX DNA_Maverick 157937 158317 58 - . . scaffold37 WUBlastX DNA_Maverick 157976 158263 58 - . . scaffold37 WUBlastX DNA_Maverick 158000 158380 42 - . . scaffold37 WUBlastX LTR_DIRS 158665 158892 80 + . . scaffold37 WUBlastX LTR_DIRS 158749 158892 107 + . . scaffold37 WUBlastX LTR_DIRS 158897 159148 138 + . . scaffold37 WUBlastX LTR_DIRS 159229 159360 43 + . . scaffold37 TRF Tandem_Repeat 160353 160701 572 + . . scaffold37 WUBlastX LTR_DIRS 169370 169471 21 + . . scaffold37 WUBlastX LTR_DIRS 169400 169471 32 + . . scaffold37 WUBlastX LTR_DIRS 169471 169581 55 + . . scaffold37 WUBlastX LTR_DIRS 169596 170039 210 + . . scaffold37 GLEAN promoter 179670 180669 0.902129 + . ID=CGI_10010346; scaffold37 GLEAN mRNA 180670 194320 0.902129 + . ID=CGI_10010346; scaffold37 TRF Tandem_Repeat 183851 183899 80 + . . scaffold37 TRF Tandem_Repeat 183897 183933 74 + . . scaffold37 TRF Tandem_Repeat 191743 191821 158 + . . scaffold37 TRF Tandem_Repeat 191852 191894 77 + . . scaffold37 TRF Tandem_Repeat 199860 199889 51 + . . scaffold37 TRF Tandem_Repeat 199889 199929 82 + . . scaffold37 GLEAN mRNA 208981 209967 1 - . ID=CGI_10010347; scaffold37 GLEAN promoter 209352 210351 0.995613 + . ID=CGI_10010348; scaffold37 GLEAN promoter 209968 210967 1 - . ID=CGI_10010347; scaffold37 GLEAN mRNA 210352 210657 0.995613 + . ID=CGI_10010348; scaffold37 GLEAN mRNA 212277 214965 0.999593 - . ID=CGI_10010349; scaffold37 GLEAN promoter 214966 215965 0.999593 - . ID=CGI_10010349; scaffold37 TRF Tandem_Repeat 218411 218477 134 + . . scaffold37 TRF Tandem_Repeat 221262 221291 60 + . . scaffold37 TRF Tandem_Repeat 221303 221347 90 + . . scaffold37 GLEAN promoter 235845 236844 0.772353 + . ID=CGI_10010351; scaffold37 GLEAN mRNA 236845 256430 0.772353 + . ID=CGI_10010351; scaffold370 GLEAN promoter 1 642 0.999821 + . ID=CGI_10025516; scaffold370 GLEAN mRNA 643 2557 0.999821 + . ID=CGI_10025516; scaffold370 WUBlastX DNA_Harbinger 28206 28403 92 + . . scaffold370 TRF Tandem_Repeat 30237 30264 56 + . . scaffold370 GLEAN mRNA 48035 69825 0.999273 - . ID=CGI_10025517; scaffold370 TRF Tandem_Repeat 56867 57195 378 + . . scaffold370 WUBlastX DNA_TcMar-Marin 61134 61193 30 + . . scaffold370 WUBlastX DNA_TcMar-Marin 61198 61380 23 + . . scaffold370 WUBlastX LINE_L1-Tx1 65989 66957 91 - . . scaffold370 GLEAN promoter 69826 70825 0.999273 - . ID=CGI_10025517; scaffold370 GLEAN mRNA 70971 73632 1 - . ID=CGI_10025518; scaffold370 GLEAN promoter 73633 74632 1 - . ID=CGI_10025518; scaffold370 TRF Tandem_Repeat 74716 74831 64 + . . scaffold370 TRF Tandem_Repeat 74851 74902 50 + . . scaffold370 TRF Tandem_Repeat 75341 75456 73 + . . scaffold370 TRF Tandem_Repeat 75344 75462 70 + . . scaffold370 TRF Tandem_Repeat 75352 75462 62 + . . scaffold370 TRF Tandem_Repeat 76085 76198 90 + . . scaffold370 GLEAN mRNA 78096 81724 1 - . ID=CGI_10025519; scaffold370 GLEAN promoter 81725 82724 1 - . ID=CGI_10025519; scaffold370 GLEAN promoter 81857 82856 0.999507 + . ID=CGI_10025520; scaffold370 GLEAN mRNA 82857 83978 0.999507 + . ID=CGI_10025520; scaffold370 GLEAN promoter 96220 97219 0.648503 + . ID=CGI_10025521; scaffold370 GLEAN mRNA 97220 98248 0.648503 + . ID=CGI_10025521; scaffold370 GLEAN mRNA 102161 103381 0.996819 - . ID=CGI_10025522; scaffold370 GLEAN promoter 103382 104381 0.996819 - . ID=CGI_10025522; scaffold370 GLEAN promoter 108431 109430 0.992511 + . ID=CGI_10025523; scaffold370 GLEAN mRNA 109431 110965 0.992511 + . ID=CGI_10025523; scaffold370 GLEAN mRNA 114547 129313 0.7324 - . ID=CGI_10025524; scaffold370 WUBlastX LTR_Gypsy 121472 121615 69 - . . scaffold370 GLEAN promoter 129179 130178 0.937779 + . ID=CGI_10025525; scaffold370 GLEAN promoter 129314 130313 0.7324 - . ID=CGI_10025524; scaffold370 GLEAN mRNA 130179 133024 0.937779 + . ID=CGI_10025525; scaffold370 GLEAN promoter 132270 133269 1 + . ID=CGI_10025526; scaffold370 GLEAN mRNA 133270 148275 1 + . ID=CGI_10025526; scaffold370 TRF Tandem_Repeat 148707 148753 94 + . . scaffold370 TRF Tandem_Repeat 150172 150266 138 + . . scaffold370 TRF Tandem_Repeat 161437 161495 70 + . . scaffold370 TRF Tandem_Repeat 161454 161498 67 + . . scaffold370 TRF Tandem_Repeat 166572 166855 330 + . . scaffold370 TRF Tandem_Repeat 166576 166850 285 + . . scaffold370 TRF Tandem_Repeat 167345 167543 211 + . . scaffold370 TRF Tandem_Repeat 167345 167549 351 + . . scaffold370 GLEAN mRNA 169419 194648 0.857316 - . ID=CGI_10025527; scaffold370 TRF Tandem_Repeat 175840 175879 80 + . . scaffold370 TRF Tandem_Repeat 178405 178464 75 + . . scaffold370 TRF Tandem_Repeat 178409 178464 58 + . . scaffold370 TRF Tandem_Repeat 184025 184116 130 + . . scaffold370 TRF Tandem_Repeat 184194 184353 169 + . . scaffold370 TRF Tandem_Repeat 184519 184612 127 + . . scaffold370 TRF Tandem_Repeat 186521 187263 950 + . . scaffold370 WUBlastX LINE_RTE-X 188182 188448 40 - . . scaffold370 WUBlastX LINE_RTE-X 188248 188574 40 - . . scaffold370 WUBlastX LINE_RTE-X 188290 188487 51 - . . scaffold370 WUBlastX LINE_RTE-X 188290 188448 67 - . . scaffold370 WUBlastX LINE_RTE-X 188534 188707 25 - . . scaffold370 WUBlastX LINE_RTE-X 188534 188659 35 - . . scaffold370 GLEAN promoter 194649 195648 0.857316 - . ID=CGI_10025527; scaffold370 GLEAN promoter 205452 206451 0.593383 + . ID=CGI_10025528; scaffold370 GLEAN mRNA 206452 214758 0.593383 + . ID=CGI_10025528; scaffold370 GLEAN mRNA 209445 220615 0.499656 - . ID=CGI_10025529; scaffold370 WUBlastX LINE_RTE-X 213798 214058 59 + . . scaffold370 TRF Tandem_Repeat 219943 220331 231 + . . scaffold370 TRF Tandem_Repeat 220009 220359 531 + . . scaffold370 GLEAN promoter 220616 221615 0.499656 - . ID=CGI_10025529; scaffold370 GLEAN mRNA 221392 222381 0.59015 - . ID=CGI_10025530; scaffold370 GLEAN promoter 222382 223381 0.59015 - . ID=CGI_10025530; scaffold370 GLEAN mRNA 223421 226200 0.967527 - . ID=CGI_10025531; scaffold370 GLEAN promoter 226201 227200 0.967527 - . ID=CGI_10025531; scaffold370 TRF Tandem_Repeat 227967 228046 144 + . . scaffold370 GLEAN mRNA 231516 234307 1 - . ID=CGI_10025532; scaffold370 GLEAN promoter 234308 235307 1 - . ID=CGI_10025532; scaffold370 TRF Tandem_Repeat 234377 234576 161 + . . scaffold370 TRF Tandem_Repeat 236143 236170 56 + . . scaffold370 TRF Tandem_Repeat 239063 239097 70 + . . scaffold370 WUBlastX LINE_L2 243256 243462 116 + . . scaffold370 GLEAN mRNA 296353 302463 0.999305 - . ID=CGI_10025533; scaffold370 GLEAN promoter 302464 303463 0.999305 - . ID=CGI_10025533; scaffold370 GLEAN promoter 302684 303683 0.791709 + . ID=CGI_10025534; scaffold370 WUBlastX DNA_PiggyBac 303574 303699 26 - . . scaffold370 GLEAN mRNA 303684 313494 0.791709 + . ID=CGI_10025534; scaffold370 GLEAN mRNA 303992 316863 0.99935 - . ID=CGI_10025535; scaffold370 TRF Tandem_Repeat 306724 306792 57 + . . scaffold370 GLEAN promoter 316864 317863 0.99935 - . ID=CGI_10025535; scaffold370 GLEAN mRNA 318176 353601 0.880362 - . ID=CGI_10025536; scaffold370 GLEAN promoter 342337 343336 0.999372 + . ID=CGI_10025537; scaffold370 GLEAN promoter 342547 343546 0.68597 + . ID=CGI_10025538; scaffold370 GLEAN mRNA 343337 343531 0.999372 + . ID=CGI_10025537; scaffold370 GLEAN mRNA 343547 350120 0.68597 + . ID=CGI_10025538; scaffold370 GLEAN promoter 353602 354601 0.880362 - . ID=CGI_10025536; scaffold370 TRF Tandem_Repeat 357815 357884 122 + . . scaffold370 GLEAN promoter 361088 362087 1 + . ID=CGI_10025539; scaffold370 TRF Tandem_Repeat 361840 361919 133 + . . scaffold370 GLEAN mRNA 362088 364206 1 + . ID=CGI_10025539; scaffold370 GLEAN mRNA 369345 372435 0.985459 - . ID=CGI_10025540; scaffold370 TRF Tandem_Repeat 369938 369991 54 + . . scaffold370 GLEAN promoter 372436 373435 0.985459 - . ID=CGI_10025540; scaffold370 WUBlastX LINE_RTE-BovB 388835 389233 280 + . . scaffold370 WUBlastX LINE_L1-Tx1 390261 390614 93 + . . scaffold370 TRF Tandem_Repeat 390909 390941 66 + . . scaffold370 WUBlastX LTR_Gypsy 394874 394930 21 - . . scaffold370 WUBlastX LTR_Gypsy 395378 395746 159 - . . scaffold370 WUBlastX LTR_Gypsy 395438 395791 328 - . . scaffold370 WUBlastX LTR_Gypsy 395696 396658 649 + . . scaffold370 WUBlastX LTR_Gypsy 395777 396496 710 + . . scaffold370 WUBlastX LTR_Gypsy 395798 396871 195 + . . scaffold370 WUBlastX LTR_Gypsy 397109 397210 23 + . . scaffold370 TRF Tandem_Repeat 401597 401626 60 + . . scaffold370 WUBlastX LINE_Penelope 403300 403836 37 - . . scaffold370 TRF Tandem_Repeat 407074 407113 80 + . . scaffold370 WUBlastX LINE_RTE-X 408968 409333 76 - . . scaffold370 WUBlastX LINE_RTE-X 409055 409393 20 - . . scaffold370 TRF Tandem_Repeat 410535 410560 52 + . . scaffold370 GLEAN mRNA 412234 431055 0.996812 - . ID=CGI_10025541; scaffold370 TRF Tandem_Repeat 426707 426747 82 + . . scaffold370 GLEAN promoter 431056 432055 0.996812 - . ID=CGI_10025541; scaffold370 GLEAN promoter 431990 432989 0.613407 + . ID=CGI_10025542; scaffold370 GLEAN mRNA 432990 468015 0.613407 + . ID=CGI_10025542; scaffold370 TRF Tandem_Repeat 437280 438276 873 + . . scaffold370 TRF Tandem_Repeat 447613 448955 1872 + . . scaffold370 GLEAN mRNA 454257 462052 0.999661 - . ID=CGI_10025543; scaffold370 GLEAN promoter 462053 463052 0.999661 - . ID=CGI_10025543; scaffold370 TRF Tandem_Repeat 468690 468748 118 + . . scaffold370 GLEAN mRNA 472232 473131 0.694469 - . ID=CGI_10025544; scaffold370 GLEAN promoter 473132 474131 0.694469 - . ID=CGI_10025544; scaffold370 GLEAN promoter 484659 485658 0.615393 + . ID=CGI_10025545; scaffold370 GLEAN mRNA 485659 488857 0.615393 + . ID=CGI_10025545; scaffold370 TRF Tandem_Repeat 487985 488015 62 + . . scaffold370 GLEAN promoter 488571 489570 0.999999 + . ID=CGI_10025546; scaffold370 GLEAN mRNA 489571 491103 0.999999 + . ID=CGI_10025546; scaffold370 TRF Tandem_Repeat 492818 492861 52 + . . scaffold370 TRF Tandem_Repeat 492819 492870 68 + . . scaffold370 TRF Tandem_Repeat 498245 498319 150 + . . scaffold370 TRF Tandem_Repeat 498809 498871 126 + . . scaffold370 GLEAN promoter 501040 502039 0.999806 + . ID=CGI_10025547; scaffold370 TRF Tandem_Repeat 501831 501877 94 + . . scaffold370 GLEAN mRNA 502040 504947 0.999806 + . ID=CGI_10025547; scaffold370 TRF Tandem_Repeat 503090 503130 82 + . . scaffold370 TRF Tandem_Repeat 505446 505546 114 + . . scaffold370 TRF Tandem_Repeat 505625 505718 100 + . . scaffold370 GLEAN promoter 505649 506648 0.999676 + . ID=CGI_10025548; scaffold370 TRF Tandem_Repeat 505947 506042 176 + . . scaffold370 GLEAN mRNA 506649 511011 0.999676 + . ID=CGI_10025548; scaffold370 GLEAN promoter 514052 515051 0.840334 + . ID=CGI_10025549; scaffold370 GLEAN mRNA 515052 519980 0.840334 + . ID=CGI_10025549; scaffold370 TRF Tandem_Repeat 529185 529221 74 + . . scaffold370 TRF Tandem_Repeat 530804 530833 60 + . . scaffold370 TRF Tandem_Repeat 533000 533057 82 + . . scaffold370 TRF Tandem_Repeat 534492 535815 1849 + . . scaffold370 TRF Tandem_Repeat 558746 558770 50 + . . scaffold370 TRF Tandem_Repeat 566793 566838 83 + . . scaffold370 TRF Tandem_Repeat 568594 568628 70 + . . scaffold370 TRF Tandem_Repeat 568659 568710 104 + . . scaffold370 GLEAN promoter 573150 574149 0.999624 + . ID=CGI_10025550; scaffold370 GLEAN mRNA 574150 586170 0.999624 + . ID=CGI_10025550; scaffold370 TRF Tandem_Repeat 574243 574273 62 + . . scaffold370 GLEAN promoter 588397 589396 0.999416 + . ID=CGI_10025551; scaffold370 TRF Tandem_Repeat 589206 589247 84 + . . scaffold370 GLEAN mRNA 589397 592592 0.999416 + . ID=CGI_10025551; scaffold370 GLEAN mRNA 595216 598508 0.517238 - . ID=CGI_10025552; scaffold370 GLEAN promoter 598509 599508 0.517238 - . ID=CGI_10025552; scaffold370 WUBlastX LINE_CR1-L2 603736 604233 45 - . . scaffold370 WUBlastX LINE_CR1-L2 604051 604233 70 - . . scaffold370 WUBlastX LINE_CR1 604332 604385 30 - . . scaffold370 WUBlastX LINE_CR1-L2 604390 604431 27 - . . scaffold370 WUBlastX LINE_CR1 604393 604449 26 - . . scaffold370 GLEAN mRNA 606474 606830 0.991545 - . ID=CGI_10025553; scaffold370 GLEAN promoter 606831 607830 0.991545 - . ID=CGI_10025553; scaffold370 GLEAN mRNA 607027 608364 0.991504 - . ID=CGI_10025554; scaffold370 TRF Tandem_Repeat 607285 607426 207 + . . scaffold370 GLEAN promoter 608365 609364 0.991504 - . ID=CGI_10025554; scaffold370 WUBlastX LTR_Copia 609969 610112 36 - . . scaffold370 WUBlastX LTR_Gypsy-Cigr 610026 611111 781 - . . scaffold370 WUBlastX LTR_Gypsy 611107 611148 27 - . . scaffold370 WUBlastX LTR_Gypsy-Cigr 611122 612159 610 - . . scaffold370 WUBlastX LTR_Gypsy 612143 612781 382 - . . scaffold370 WUBlastX LTR_Gypsy-Cigr 612161 612670 500 - . . scaffold370 WUBlastX LTR_Gypsy 612660 613628 217 - . . scaffold370 WUBlastX LTR_Gypsy 613320 613709 66 - . . scaffold370 WUBlastX LTR_Gypsy 613326 613796 25 - . . scaffold370 WUBlastX LTR_Gypsy-Cigr 613835 614584 184 - . . scaffold370 WUBlastX LTR_Gypsy 614405 614668 45 - . . scaffold370 TRF Tandem_Repeat 615418 615468 95 + . . scaffold370 GLEAN mRNA 618770 622061 1 - . ID=CGI_10025555; scaffold370 GLEAN promoter 622062 623061 1 - . ID=CGI_10025555; scaffold370 GLEAN promoter 624533 625532 1 + . ID=CGI_10025556; scaffold370 TRF Tandem_Repeat 624665 624702 76 + . . scaffold370 GLEAN mRNA 625533 628092 1 + . ID=CGI_10025556; scaffold370 GLEAN mRNA 630608 656609 0.654105 - . ID=CGI_10025557; scaffold370 TRF Tandem_Repeat 638084 638633 712 + . . scaffold370 GLEAN promoter 656610 657609 0.654105 - . ID=CGI_10025557; scaffold370 GLEAN promoter 657246 658245 0.858 + . ID=CGI_10025558; scaffold370 GLEAN mRNA 658246 665151 0.858 + . ID=CGI_10025558; scaffold370 TRF Tandem_Repeat 663593 663632 80 + . . scaffold370 GLEAN mRNA 665280 666372 1 - . ID=CGI_10025559; scaffold370 GLEAN promoter 666373 667372 1 - . ID=CGI_10025559; scaffold370 GLEAN promoter 669260 670259 1 + . ID=CGI_10025560; scaffold370 GLEAN mRNA 670260 670981 1 + . ID=CGI_10025560; scaffold370 GLEAN mRNA 678243 692691 0.999675 - . ID=CGI_10025561; scaffold370 GLEAN promoter 692692 693691 0.999675 - . ID=CGI_10025561; scaffold370 GLEAN mRNA 711386 712203 1 - . ID=CGI_10025562; scaffold370 GLEAN promoter 712204 713203 1 - . ID=CGI_10025562; scaffold370 TRF Tandem_Repeat 715100 715132 66 + . . scaffold370 GLEAN promoter 716729 717728 0.702224 + . ID=CGI_10025563; scaffold370 GLEAN mRNA 717729 720321 0.702224 + . ID=CGI_10025563; scaffold370 WUBlastX LINE_RTE-X 731404 731703 92 + . . scaffold370 WUBlastX LINE_RTE-X 731419 731643 98 + . . scaffold370 WUBlastX LINE_RTE-X 733617 734132 114 + . . scaffold370 TRF Tandem_Repeat 737123 737177 51 + . . scaffold370 TRF Tandem_Repeat 737124 737170 53 + . . scaffold370 GLEAN promoter 737354 738353 1 + . ID=CGI_10025564; scaffold370 GLEAN mRNA 738354 740846 1 + . ID=CGI_10025564; scaffold370 TRF Tandem_Repeat 739630 739667 51 + . . scaffold370 WUBlastX LINE_RTE-X 746203 746388 33 + . . scaffold370 TRF Tandem_Repeat 766082 766796 861 + . . scaffold370 WUBlastX DNA_Maverick 797682 797822 82 - . . scaffold370 TRF Tandem_Repeat 798221 798262 54 + . . scaffold370 TRF Tandem_Repeat 798222 798268 51 + . . scaffold370 WUBlastX LINE_L1 800650 801825 529 + . . scaffold370 WUBlastX LINE_L1-Tx1 800842 801816 589 + . . scaffold370 WUBlastX LINE_L1-Tx1 801816 802721 529 + . . scaffold370 WUBlastX LINE_L1-Tx1 801819 802931 208 + . . scaffold370 WUBlastX LINE_L1 802924 803031 34 + . . scaffold370 WUBlastX LINE_L1-Tx1 802927 803103 27 + . . scaffold370 WUBlastX LINE_L1-Tx1 802936 803076 28 + . . scaffold370 WUBlastX LINE_L1 803276 803473 41 + . . scaffold370 WUBlastX DNA_Harbinger 807447 807614 58 + . . scaffold370 TRF Tandem_Repeat 808769 808816 78 + . . scaffold370 WUBlastX DNA_Maverick 825013 825153 24 - . . scaffold370 WUBlastX DNA_Maverick 825037 825795 84 - . . scaffold370 WUBlastX DNA_Maverick 825550 825846 112 - . . scaffold370 WUBlastX DNA_Maverick 825571 825798 134 - . . scaffold370 WUBlastX DNA_Maverick 825767 826063 72 - . . scaffold370 WUBlastX LTR_Copia 826302 826559 23 - . . scaffold370 TRF Tandem_Repeat 836641 836722 76 + . . scaffold370 GLEAN promoter 837405 838404 0.855201 + . ID=CGI_10025566; scaffold370 TRF Tandem_Repeat 837690 837790 53 + . . scaffold370 TRF Tandem_Repeat 838364 838398 52 + . . scaffold370 GLEAN mRNA 838405 846799 0.855201 + . ID=CGI_10025566; scaffold370 WUBlastX LINE_L1-Tx1 839648 840127 65 - . . scaffold370 WUBlastX DNA_hAT-hATw 843596 844513 33 + . . scaffold370 WUBlastX DNA_hAT-hATw 843776 844513 60 + . . scaffold370 WUBlastX DNA_hAT-hATw 843845 844747 34 + . . scaffold370 WUBlastX DNA_hAT-hATw 844867 845955 185 + . . scaffold370 WUBlastX LTR_Gypsy 846811 847566 229 - . . scaffold370 WUBlastX LTR_Gypsy 847418 848377 670 - . . scaffold370 WUBlastX LTR_Copia 848437 848724 25 - . . scaffold370 WUBlastX LTR_ERV1 848587 848802 26 - . . scaffold370 WUBlastX LTR_Gypsy 849340 849507 65 - . . scaffold370 WUBlastX LTR_Gypsy 849488 849568 24 - . . scaffold370 WUBlastX LTR_Gypsy 849542 849946 101 - . . scaffold370 TRF Tandem_Repeat 861230 861281 70 + . . scaffold370 TRF Tandem_Repeat 871882 871935 99 + . . scaffold370 TRF Tandem_Repeat 873394 873437 88 + . . scaffold370 TRF Tandem_Repeat 875463 875675 200 + . . scaffold370 TRF Tandem_Repeat 875466 875686 234 + . . scaffold370 GLEAN promoter 875596 876595 0.978506 + . ID=CGI_10025567; scaffold370 GLEAN mRNA 876596 886845 0.978506 + . ID=CGI_10025567; scaffold370 TRF Tandem_Repeat 885155 886115 1062 + . . scaffold370 GLEAN promoter 897735 898734 0.544852 + . ID=CGI_10025568; scaffold370 TRF Tandem_Repeat 897823 897929 115 + . . scaffold370 GLEAN mRNA 898735 906824 0.544852 + . ID=CGI_10025568; scaffold370 GLEAN promoter 906868 907867 0.687174 + . ID=CGI_10025569; scaffold370 GLEAN mRNA 907868 922303 0.687174 + . ID=CGI_10025569; scaffold370 TRF Tandem_Repeat 911785 912042 399 + . . scaffold370 TRF Tandem_Repeat 912242 912576 301 + . . scaffold370 GLEAN promoter 929534 930533 0.556562 + . ID=CGI_10025570; scaffold370 GLEAN mRNA 930534 952157 0.556562 + . ID=CGI_10025570; scaffold370 TRF Tandem_Repeat 933199 933240 66 + . . scaffold370 TRF Tandem_Repeat 939426 939642 133 + . . scaffold370 TRF Tandem_Repeat 945867 945927 122 + . . scaffold370 TRF Tandem_Repeat 949643 949673 62 + . . scaffold370 TRF Tandem_Repeat 952882 952915 68 + . . scaffold370 TRF Tandem_Repeat 963881 963956 152 + . . scaffold370 GLEAN promoter 964827 965826 0.999979 + . ID=CGI_10025571; scaffold370 GLEAN mRNA 965827 971467 0.999979 + . ID=CGI_10025571; scaffold370 TRF Tandem_Repeat 968350 968377 56 + . . scaffold370 GLEAN promoter 970947 971946 1 + . ID=CGI_10025572; scaffold370 GLEAN mRNA 971947 976994 1 + . ID=CGI_10025572; scaffold370 WUBlastX LINE_L1-Tx1 979415 980449 181 + . . scaffold370 WUBlastX LINE_L1-Tx1 979841 980464 522 + . . scaffold370 WUBlastX LINE_L1 979853 980584 358 + . . scaffold370 WUBlastX LINE_L1 980446 980619 42 - . . scaffold370 WUBlastX LINE_L1-Tx1 980622 981395 233 - . . scaffold370 WUBlastX LINE_L1-Tx1 981322 982062 140 + . . scaffold370 WUBlastX LINE_L1-Tx1 981445 981996 151 + . . scaffold370 WUBlastX DNA_Crypton 986299 986517 67 + . . scaffold370 WUBlastX DNA_Crypton 986854 987186 143 + . . scaffold370 TRF Tandem_Repeat 987337 987406 113 + . . scaffold370 GLEAN mRNA 988824 993187 0.645351 - . ID=CGI_10025574; scaffold370 TRF Tandem_Repeat 989134 989225 148 + . . scaffold370 TRF Tandem_Repeat 989134 989225 152 + . . scaffold370 TRF Tandem_Repeat 990715 990762 62 + . . scaffold370 TRF Tandem_Repeat 991499 991552 63 + . . scaffold370 TRF Tandem_Repeat 991501 991556 71 + . . scaffold370 GLEAN promoter 993188 994187 0.645351 - . ID=CGI_10025574; scaffold370 TRF Tandem_Repeat 994206 994247 75 + . . scaffold370 GLEAN mRNA 996653 1001094 1 - . ID=CGI_10025575; scaffold370 TRF Tandem_Repeat 1000169 1000214 92 + . . scaffold370 TRF Tandem_Repeat 1000260 1000298 78 + . . scaffold370 TRF Tandem_Repeat 1000585 1000645 122 + . . scaffold370 GLEAN promoter 1001095 1002094 1 - . ID=CGI_10025575; scaffold370 TRF Tandem_Repeat 1004413 1004485 128 + . . scaffold370 TRF Tandem_Repeat 1004826 1004867 59 + . . scaffold370 WUBlastX LINE_L1-Tx1 1008724 1009107 20 - . . scaffold370 WUBlastX LINE_L1-Tx1 1008733 1008987 74 - . . scaffold370 WUBlastX LINE_L1-Tx1 1008781 1009044 81 - . . scaffold370 GLEAN mRNA 1013155 1013571 0.481188 - . ID=CGI_10025576; scaffold370 GLEAN promoter 1013572 1014571 0.481188 - . ID=CGI_10025576; scaffold370 GLEAN mRNA 1013864 1033507 0.606623 - . ID=CGI_10025577; scaffold370 TRF Tandem_Repeat 1017199 1017239 82 + . . scaffold370 TRF Tandem_Repeat 1026282 1026762 671 + . . scaffold370 GLEAN promoter 1026805 1027804 1 + . ID=CGI_10025578; scaffold370 GLEAN mRNA 1027805 1030667 1 + . ID=CGI_10025578; scaffold370 TRF Tandem_Repeat 1027983 1028229 377 + . . scaffold370 TRF Tandem_Repeat 1028664 1028710 94 + . . scaffold370 TRF Tandem_Repeat 1028726 1028867 167 + . . scaffold370 TRF Tandem_Repeat 1028728 1028885 133 + . . scaffold370 TRF Tandem_Repeat 1028983 1029209 274 + . . scaffold370 TRF Tandem_Repeat 1030034 1030085 50 + . . scaffold370 GLEAN promoter 1033411 1034410 0.758246 + . ID=CGI_10025579; scaffold370 GLEAN promoter 1033508 1034507 0.606623 - . ID=CGI_10025577; scaffold370 GLEAN mRNA 1034411 1060823 0.758246 + . ID=CGI_10025579; scaffold370 TRF Tandem_Repeat 1040474 1040512 78 + . . scaffold370 TRF Tandem_Repeat 1041607 1041669 117 + . . scaffold370 TRF Tandem_Repeat 1041731 1041778 87 + . . scaffold370 TRF Tandem_Repeat 1055736 1055793 116 + . . scaffold370 GLEAN mRNA 1062973 1086942 1 - . ID=CGI_10025580; scaffold370 TRF Tandem_Repeat 1084937 1084971 52 + . . scaffold370 GLEAN promoter 1086943 1087942 1 - . ID=CGI_10025580; scaffold37002 TRF Tandem_Repeat 1687 1764 156 + . . scaffold37002 TRF Tandem_Repeat 7615 7652 76 + . . scaffold37002 WUBlastX LINE_LOA 8289 8612 29 + . . scaffold37002 WUBlastX LINE_CR1 8343 8690 141 + . . scaffold37002 WUBlastX LINE_CR1 8349 8624 160 + . . scaffold37002 WUBlastX LINE_L2 8394 8891 69 + . . scaffold37002 WUBlastX LINE_CR1-L2 8397 8756 92 + . . scaffold37002 WUBlastX LINE_CR1 8406 8624 164 + . . scaffold37002 WUBlastX LINE_CR1 8808 8972 26 + . . scaffold37002 WUBlastX LINE_L2 9134 9355 23 + . . scaffold37002 WUBlastX LINE_L2 9181 9822 129 + . . scaffold37002 WUBlastX LINE_CR1 9322 10041 504 + . . scaffold37002 WUBlastX LINE_CR1 9328 10233 141 + . . scaffold37002 WUBlastX LINE_RTE-X 13328 13462 52 + . . scaffold37002 GLEAN mRNA 16492 24413 0.558134 - . ID=CGI_10002232; scaffold37002 TRF Tandem_Repeat 21701 21733 66 + . . scaffold37002 GLEAN promoter 24414 25413 0.558134 - . ID=CGI_10002232; scaffold37002 GLEAN mRNA 27406 31988 0.619194 - . ID=CGI_10002233; scaffold37002 TRF Tandem_Repeat 30002 30045 88 + . . scaffold37002 GLEAN promoter 31989 32988 0.619194 - . ID=CGI_10002233; scaffold37002 GLEAN mRNA 32287 34413 0.61464 - . ID=CGI_10002234; scaffold37002 GLEAN promoter 34414 35413 0.61464 - . ID=CGI_10002234; scaffold37002 GLEAN mRNA 38147 38548 0.777482 - . ID=CGI_10002235; scaffold37002 GLEAN promoter 38549 39548 0.777482 - . ID=CGI_10002235; scaffold37006 WUBlastX LINE_CR1 408 1088 104 + . . scaffold37006 TRF Tandem_Repeat 4776 4806 62 + . . scaffold37006 TRF Tandem_Repeat 11038 11066 58 + . . scaffold37006 TRF Tandem_Repeat 15259 15308 55 + . . scaffold37006 GLEAN promoter 17201 18200 0.554997 + . ID=CGI_10002223; scaffold37006 GLEAN mRNA 18201 34112 0.554997 + . ID=CGI_10002223; scaffold37006 TRF Tandem_Repeat 22665 22694 51 + . . scaffold37006 WUBlastX LTR_DIRS 26561 26830 100 - . . scaffold37006 WUBlastX LTR_DIRS 26832 27212 245 - . . scaffold37006 WUBlastX LTR_DIRS 26832 27305 210 - . . scaffold37006 WUBlastX LTR_DIRS 27337 27483 41 - . . scaffold37006 WUBlastX LINE_L2 31101 31427 54 - . . scaffold37006 WUBlastX LINE_CR1-L2 31501 33852 831 - . . scaffold37010 TRF Tandem_Repeat 898 929 64 + . . scaffold37010 GLEAN mRNA 5448 8811 0.615405 - . ID=CGI_10002195; scaffold37010 TRF Tandem_Repeat 8275 8321 94 + . . scaffold37010 GLEAN promoter 8812 9811 0.615405 - . ID=CGI_10002195; scaffold37010 GLEAN promoter 8826 9825 0.529667 + . ID=CGI_10002196; scaffold37010 GLEAN mRNA 9826 38663 0.529667 + . ID=CGI_10002196; scaffold37010 TRF Tandem_Repeat 10564 10606 86 + . . scaffold37010 WUBlastX LTR_DIRS 30925 31092 49 - . . scaffold37010 WUBlastX LTR_DIRS 30964 31089 49 - . . scaffold37010 WUBlastX LTR_DIRS 31240 31632 91 - . . scaffold37010 WUBlastX LTR_DIRS 31735 31896 22 - . . scaffold37014 GLEAN mRNA 5198 16817 0.579637 - . ID=CGI_10002240; scaffold37014 GLEAN promoter 8782 9781 0.979846 + . ID=CGI_10002241; scaffold37014 GLEAN mRNA 9782 32138 0.979846 + . ID=CGI_10002241; scaffold37014 GLEAN promoter 16818 17817 0.579637 - . ID=CGI_10002240; scaffold37014 GLEAN mRNA 20853 28983 1 - . ID=CGI_10002242; scaffold37014 GLEAN promoter 28984 29983 1 - . ID=CGI_10002242; scaffold37014 GLEAN mRNA 33593 38790 0.998244 - . ID=CGI_10002243; scaffold37014 GLEAN promoter 38791 39790 0.998244 - . ID=CGI_10002243; scaffold37028 TRF Tandem_Repeat 5136 5205 140 + . . scaffold37028 GLEAN promoter 5654 6653 0.999375 + . ID=CGI_10002244; scaffold37028 WUBlastX DNA_Kolobok-IS4 6012 6617 69 + . . scaffold37028 WUBlastX DNA_IS4EU 6075 6587 114 + . . scaffold37028 GLEAN mRNA 6654 7142 0.999375 + . ID=CGI_10002244; scaffold37028 GLEAN mRNA 7815 15662 0.544675 - . ID=CGI_10002245; scaffold37028 GLEAN promoter 15663 16662 0.544675 - . ID=CGI_10002245; scaffold37028 WUBlastX RC_Helitron 23454 23900 49 + . . scaffold37032 WUBlastX LINE_RTE-X 20 385 99 - . . scaffold37032 WUBlastX LINE_RTE-X 390 749 131 - . . scaffold37032 WUBlastX LINE_RTE-X 745 933 22 - . . scaffold37032 WUBlastX LINE_L1-Tx1 1000 1116 56 - . . scaffold37032 WUBlastX LINE_L1 1047 1649 162 - . . scaffold37032 TRF Tandem_Repeat 1702 1771 140 + . . scaffold37032 TRF Tandem_Repeat 2698 2844 75 + . . scaffold37032 TRF Tandem_Repeat 2762 2844 69 + . . scaffold37032 GLEAN mRNA 25358 39478 0.919454 - . ID=CGI_10002246; scaffold37032 TRF Tandem_Repeat 33487 33526 80 + . . scaffold37032 TRF Tandem_Repeat 37121 37363 159 + . . scaffold37032 GLEAN promoter 39479 40184 0.919454 - . ID=CGI_10002246; scaffold37042 GLEAN promoter 1 102 0.997791 + . ID=CGI_10002285; scaffold37042 GLEAN mRNA 103 4009 0.997791 + . ID=CGI_10002285; scaffold37046 TRF Tandem_Repeat 147 281 184 + . . scaffold37046 TRF Tandem_Repeat 1106 1166 88 + . . scaffold37046 WUBlastX LINE_L2 4955 5254 42 - . . scaffold37046 WUBlastX LINE_L2 5205 5783 342 - . . scaffold37046 GLEAN mRNA 7420 32068 0.810891 - . ID=CGI_10002257; scaffold37046 TRF Tandem_Repeat 13540 13604 107 + . . scaffold37046 TRF Tandem_Repeat 29994 30062 54 + . . scaffold37046 GLEAN promoter 32069 33068 0.810891 - . ID=CGI_10002257; scaffold37046 WUBlastX LTR_Pao 39494 40213 532 - . . scaffold37046 WUBlastX LTR_Pao 40210 40296 77 - . . scaffold37054 WUBlastX LINE_L2 38399 39181 25 - . . scaffold37054 WUBlastX RC_Helitron 38567 40378 876 - . . scaffold37062 GLEAN promoter 1 312 0.999068 + . ID=CGI_10002248; scaffold37062 GLEAN mRNA 313 1191 0.999068 + . ID=CGI_10002248; scaffold37062 GLEAN promoter 4049 5048 0.965908 + . ID=CGI_10002249; scaffold37062 TRF Tandem_Repeat 4551 4584 59 + . . scaffold37062 GLEAN mRNA 5049 6548 0.965908 + . ID=CGI_10002249; scaffold37062 WUBlastX LTR_ERV1 5226 5669 30 + . . scaffold37062 GLEAN mRNA 19504 22302 0.997567 - . ID=CGI_10002250; scaffold37062 GLEAN promoter 22303 23302 0.997567 - . ID=CGI_10002250; scaffold37062 WUBlastX DNA_TcMar-Marin 24629 24844 65 + . . scaffold37062 TRF Tandem_Repeat 28304 28384 76 + . . scaffold37064 WUBlastX LINE_L2 1200 1316 45 - . . scaffold37064 WUBlastX LINE_L2 1307 1858 252 - . . scaffold37064 WUBlastX LINE_Jockey 1616 1981 22 - . . scaffold37064 WUBlastX LINE_Jockey 1637 1921 64 - . . scaffold37064 WUBlastX LINE_CR1-L2 2453 3013 92 - . . scaffold37064 WUBlastX LINE_L2 2742 3209 162 - . . scaffold37064 WUBlastX LINE_L2 3163 3768 225 - . . scaffold37064 WUBlastX LINE_L2 3187 3987 68 - . . scaffold37064 GLEAN promoter 5157 6156 0.861672 + . ID=CGI_10002258; scaffold37064 GLEAN mRNA 6157 24042 0.861672 + . ID=CGI_10002258; scaffold37064 TRF Tandem_Repeat 7009 7138 63 + . . scaffold37064 TRF Tandem_Repeat 19224 19282 63 + . . scaffold37064 GLEAN mRNA 25678 26331 0.995237 - . ID=CGI_10002259; scaffold37064 GLEAN promoter 26332 27331 0.995237 - . ID=CGI_10002259; scaffold37064 GLEAN mRNA 26599 28359 0.814068 - . ID=CGI_10002260; scaffold37064 WUBlastX DNA_Kolobok-Hyd 27094 27891 52 - . . scaffold37064 TRF Tandem_Repeat 28140 28189 91 + . . scaffold37064 GLEAN promoter 28360 29359 0.814068 - . ID=CGI_10002260; scaffold37064 TRF Tandem_Repeat 28613 28670 116 + . . scaffold37068 TRF Tandem_Repeat 663 753 182 + . . scaffold37068 TRF Tandem_Repeat 788 835 53 + . . scaffold37068 TRF Tandem_Repeat 912 941 60 + . . scaffold37068 GLEAN promoter 1157 2156 1 + . ID=CGI_10002224; scaffold37068 WUBlastX LINE_RTE-X 1295 1597 40 - . . scaffold37068 WUBlastX LINE_RTE-X 1409 1612 82 - . . scaffold37068 GLEAN mRNA 2157 8325 1 + . ID=CGI_10002224; scaffold37068 GLEAN mRNA 11128 25304 0.811247 - . ID=CGI_10002225; scaffold37068 GLEAN promoter 25294 26293 1 + . ID=CGI_10002226; scaffold37068 GLEAN promoter 25305 26304 0.811247 - . ID=CGI_10002225; scaffold37068 GLEAN mRNA 26294 34160 1 + . ID=CGI_10002226; scaffold37068 GLEAN mRNA 36093 39623 1 - . ID=CGI_10002227; scaffold37068 GLEAN promoter 39624 40082 1 - . ID=CGI_10002227; scaffold37080 TRF Tandem_Repeat 646 717 144 + . . scaffold37080 TRF Tandem_Repeat 7581 7619 78 + . . scaffold37080 TRF Tandem_Repeat 8957 9166 72 + . . scaffold37080 TRF Tandem_Repeat 8957 9166 171 + . . scaffold37080 WUBlastX LINE_CR1-L2 9420 10190 310 + . . scaffold37080 WUBlastX LINE_CR1-L2 9615 10190 356 + . . scaffold37080 TRF Tandem_Repeat 30626 30662 65 + . . scaffold37080 TRF Tandem_Repeat 30772 30813 84 + . . scaffold37080 WUBlastX DNA_Harbinger 32864 33112 42 - . . scaffold37080 WUBlastX DNA_Harbinger 33043 33465 63 - . . scaffold37080 WUBlastX DNA_Harbinger 33127 33579 142 - . . scaffold37082 GLEAN mRNA 945 2549 0.999958 - . ID=CGI_10002266; scaffold37082 GLEAN promoter 2550 3549 0.999958 - . ID=CGI_10002266; scaffold37092 GLEAN promoter 1 96 0.999958 + . ID=CGI_10002286; scaffold37092 GLEAN mRNA 97 5721 0.999958 + . ID=CGI_10002286; scaffold37092 TRF Tandem_Repeat 3347 3385 62 + . . scaffold37092 TRF Tandem_Repeat 3744 3797 108 + . . scaffold37092 TRF Tandem_Repeat 3797 3840 88 + . . scaffold37092 TRF Tandem_Repeat 3946 3986 82 + . . scaffold37092 WUBlastX DNA_Maverick 7422 7949 47 + . . scaffold37092 WUBlastX DNA_Maverick 7513 7713 50 + . . scaffold37092 WUBlastX DNA_Maverick 7797 7943 80 + . . scaffold37092 WUBlastX DNA_Maverick 7824 7976 65 + . . scaffold37092 TRF Tandem_Repeat 13485 13517 66 + . . scaffold37092 TRF Tandem_Repeat 15060 15113 99 + . . scaffold37092 GLEAN mRNA 20131 25087 0.639824 - . ID=CGI_10002287; scaffold37092 GLEAN promoter 25088 26087 0.639824 - . ID=CGI_10002287; scaffold37092 WUBlastX LINE_L1-Tx1 26305 26751 73 - . . scaffold37092 WUBlastX LINE_L1-Tx1 26419 26772 92 - . . scaffold37092 WUBlastX LINE_L1 27959 28231 20 - . . scaffold37092 WUBlastX LINE_L1-Tx1 28279 29064 249 - . . scaffold37092 WUBlastX LINE_L1-Tx1 28970 29551 324 - . . scaffold37092 WUBlastX LINE_L1-Tx1 28982 29965 300 - . . scaffold37092 WUBlastX LINE_L1-Tx1 29744 30010 99 - . . scaffold37092 WUBlastX LINE_L1 30007 30309 83 - . . scaffold37092 WUBlastX LINE_L1-Tx1 30037 30417 46 - . . scaffold37096 GLEAN promoter 16786 17785 0.811083 + . ID=CGI_10002283; scaffold37096 GLEAN mRNA 17786 25355 0.811083 + . ID=CGI_10002283; scaffold37096 GLEAN mRNA 25802 26682 0.352688 - . ID=CGI_10002284; scaffold37096 GLEAN promoter 26683 27682 0.352688 - . ID=CGI_10002284; scaffold37098 GLEAN mRNA 33886 36675 0.993044 - . ID=CGI_10002221; scaffold37098 GLEAN promoter 36676 37675 0.993044 - . ID=CGI_10002221; scaffold37098 GLEAN mRNA 36955 37170 0.999372 - . ID=CGI_10002222; scaffold37098 GLEAN promoter 37171 38170 0.999372 - . ID=CGI_10002222; scaffold371 WUBlastX DNA_TcMar-Tc1 10670 11152 47 + . . scaffold371 WUBlastX DNA_TcMar-Tc1 10762 11022 52 + . . scaffold371 WUBlastX DNA_TcMar-Tc1 10949 11146 69 + . . scaffold371 WUBlastX DNA_TcMar-Tc1 10949 11194 56 + . . scaffold371 WUBlastX DNA_TcMar-Tc1 11000 11155 79 + . . scaffold371 TRF Tandem_Repeat 36292 36346 110 + . . scaffold371 WUBlastX LINE_RTE-X 37758 37946 33 + . . scaffold371 WUBlastX LINE_Rex-Babar 38087 38140 21 + . . scaffold371 WUBlastX LINE_RTE-X 38186 38455 25 + . . scaffold371 WUBlastX LINE_RTE-X 38484 40019 631 + . . scaffold371 WUBlastX LINE_RTE-X 40066 40458 48 + . . scaffold371 WUBlastX LINE_RTE-X 40255 40443 65 + . . scaffold371 WUBlastX LINE_RTE-X 40306 40482 57 + . . scaffold371 GLEAN promoter 42640 43639 0.999676 + . ID=CGI_10004128; scaffold371 GLEAN mRNA 43640 46933 0.999676 + . ID=CGI_10004128; scaffold371 TRF Tandem_Repeat 52641 52685 90 + . . scaffold371 TRF Tandem_Repeat 59629 60450 600 + . . scaffold371 TRF Tandem_Repeat 59631 60450 502 + . . scaffold371 TRF Tandem_Repeat 77060 77101 84 + . . scaffold371 TRF Tandem_Repeat 80091 80137 51 + . . scaffold371 WUBlastX LINE_CR1-L2 87792 88382 199 - . . scaffold371 WUBlastX LINE_L2 87792 88526 87 - . . scaffold371 TRF Tandem_Repeat 89397 89450 108 + . . scaffold371 WUBlastX LINE_RTE-BovB 91115 91723 53 - . . scaffold371 WUBlastX LINE_RTE-BovB 91214 91723 84 - . . scaffold37124 GLEAN mRNA 6947 22282 0.717606 - . ID=CGI_10002288; scaffold37124 GLEAN promoter 22283 23282 0.717606 - . ID=CGI_10002288; scaffold37124 WUBlastX LTR_Gypsy 25605 25685 20 + . . scaffold37124 WUBlastX LTR_Gypsy-Cigr 25760 25987 83 + . . scaffold37124 WUBlastX LTR_Gypsy-Cigr 25992 26324 125 + . . scaffold37124 WUBlastX LTR_Gypsy 26007 26390 71 + . . scaffold37124 WUBlastX LTR_Gypsy 26079 26582 61 + . . scaffold37124 WUBlastX LTR_Gypsy 26635 26910 50 + . . scaffold37124 WUBlastX LTR_Gypsy 26710 26916 64 + . . scaffold37124 WUBlastX LTR_Gypsy 26779 26949 50 + . . scaffold37124 WUBlastX LTR_Gypsy 26967 27434 40 + . . scaffold37124 WUBlastX LTR_Gypsy 27320 27850 24 + . . scaffold37124 WUBlastX LTR_Gypsy 27515 27919 293 + . . scaffold37124 WUBlastX LTR_Gypsy 27515 27991 172 + . . scaffold37124 WUBlastX LTR_Gypsy 27925 28611 150 + . . scaffold37124 WUBlastX LTR_Gypsy-Cigr 28201 29097 365 + . . scaffold37124 WUBlastX LTR_Gypsy 28939 29172 56 + . . scaffold37124 WUBlastX LTR_Gypsy 29086 29271 28 + . . scaffold37124 WUBlastX LTR_Copia 29146 29295 28 + . . scaffold37124 TRF Tandem_Repeat 38738 38903 199 + . . scaffold37124 TRF Tandem_Repeat 38902 39089 198 + . . scaffold37124 TRF Tandem_Repeat 38972 39089 130 + . . scaffold37128 GLEAN promoter 2059 3058 1 + . ID=CGI_10002289; scaffold37128 GLEAN mRNA 3059 12731 1 + . ID=CGI_10002289; scaffold37134 TRF Tandem_Repeat 490 533 88 + . . scaffold37134 WUBlastX LINE_L2 850 1572 82 - . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 4616 5056 384 + . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 5014 5826 461 + . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 5822 5926 43 + . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 5846 5971 115 + . . scaffold37134 WUBlastX LTR_Gypsy 6006 6443 214 + . . scaffold37134 WUBlastX LTR_Gypsy 6387 6479 23 + . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 6458 6913 554 + . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 6910 8052 1101 + . . scaffold37134 WUBlastX LTR_Gypsy-Troyk 8042 8170 86 + . . scaffold37134 TRF Tandem_Repeat 8299 9248 1250 + . . scaffold37134 TRF Tandem_Repeat 10960 11148 227 + . . scaffold37134 TRF Tandem_Repeat 10960 11148 308 + . . scaffold37134 TRF Tandem_Repeat 11865 12108 362 + . . scaffold37134 TRF Tandem_Repeat 11866 12104 280 + . . scaffold37134 GLEAN promoter 20848 21847 0.465716 + . ID=CGI_10002292; scaffold37134 GLEAN mRNA 21848 32414 0.465716 + . ID=CGI_10002292; scaffold37134 TRF Tandem_Repeat 25181 25234 99 + . . scaffold37134 TRF Tandem_Repeat 28608 29951 1219 + . . scaffold37134 TRF Tandem_Repeat 31857 31888 57 + . . scaffold37134 WUBlastX LTR_Gypsy-Cigr 40156 41187 184 + . . scaffold37148 TRF Tandem_Repeat 3518 3567 55 + . . scaffold37148 TRF Tandem_Repeat 8480 8535 112 + . . scaffold37148 GLEAN mRNA 9385 30637 0.645987 - . ID=CGI_10002291; scaffold37148 TRF Tandem_Repeat 9638 9695 107 + . . scaffold37148 WUBlastX LINE_RTE-BovB 10384 10992 44 + . . scaffold37148 WUBlastX LINE_RTE-BovB 10988 11209 41 + . . scaffold37148 WUBlastX LINE_RTE-BovB 11030 11209 69 + . . scaffold37148 WUBlastX LINE_L1-Tx1 12533 12868 62 + . . scaffold37148 WUBlastX DNA_Harbinger 16185 16589 187 - . . scaffold37148 TRF Tandem_Repeat 16859 16955 126 + . . scaffold37148 TRF Tandem_Repeat 17890 18078 272 + . . scaffold37148 WUBlastX LINE_RTE-BovB 28044 28175 21 + . . scaffold37148 WUBlastX LINE_RTE-BovB 28857 29402 38 + . . scaffold37148 WUBlastX LINE_RTE-BovB 28863 29117 58 + . . scaffold37148 WUBlastX LINE_RTE-BovB 29429 29527 21 + . . scaffold37148 WUBlastX LINE_RTE-BovB 29599 29736 32 + . . scaffold37148 WUBlastX LINE_RTE-BovB 29710 29823 41 + . . scaffold37148 WUBlastX LINE_RTE-BovB 29713 29874 27 + . . scaffold37148 GLEAN promoter 30638 31637 0.645987 - . ID=CGI_10002291; scaffold37148 TRF Tandem_Repeat 36405 36453 89 + . . scaffold37154 WUBlastX LINE_RTE-X 703 894 49 + . . scaffold37154 WUBlastX LINE_RTE-X 736 1068 73 + . . scaffold37154 WUBlastX LINE_RTE-X 760 939 75 + . . scaffold37154 TRF Tandem_Repeat 6904 6947 79 + . . scaffold37154 TRF Tandem_Repeat 39586 39997 562 + . . scaffold37176 GLEAN mRNA 34103 34468 0.999673 - . ID=CGI_10002300; scaffold37176 GLEAN promoter 34469 35468 0.999673 - . ID=CGI_10002300; scaffold37176 GLEAN mRNA 34870 36021 1 - . ID=CGI_10002301; scaffold37176 GLEAN promoter 36022 37021 1 - . ID=CGI_10002301; scaffold37178 GLEAN promoter 2530 3529 0.995199 + . ID=CGI_10002304; scaffold37178 GLEAN mRNA 3530 5404 0.995199 + . ID=CGI_10002304; scaffold37186 GLEAN promoter 375 1374 0.999341 + . ID=CGI_10002302; scaffold37186 GLEAN mRNA 1375 11730 0.999341 + . ID=CGI_10002302; scaffold37186 GLEAN promoter 31498 32497 1 + . ID=CGI_10002303; scaffold37186 GLEAN mRNA 32498 34853 1 + . ID=CGI_10002303; scaffold372 GLEAN mRNA 4341 7159 1 - . ID=CGI_10009690; scaffold372 TRF Tandem_Repeat 6456 6575 213 + . . scaffold372 GLEAN promoter 7160 8159 1 - . ID=CGI_10009690; scaffold372 GLEAN promoter 7613 8612 0.588368 + . ID=CGI_10009691; scaffold372 GLEAN mRNA 8613 9669 0.588368 + . ID=CGI_10009691; scaffold372 WUBlastX LINE_L1 10131 10208 20 - . . scaffold372 WUBlastX LINE_L1-Tx1 10878 12119 320 - . . scaffold372 WUBlastX LINE_L1-Tx1 12076 12432 203 - . . scaffold372 TRF Tandem_Repeat 14387 14420 50 + . . scaffold372 TRF Tandem_Repeat 19005 19065 88 + . . scaffold372 GLEAN promoter 19060 20059 0.588306 + . ID=CGI_10009692; scaffold372 GLEAN mRNA 20060 21102 0.588306 + . ID=CGI_10009692; scaffold372 TRF Tandem_Repeat 25265 25304 80 + . . scaffold372 GLEAN promoter 25879 26878 0.999051 + . ID=CGI_10009693; scaffold372 GLEAN mRNA 26879 34754 0.999051 + . ID=CGI_10009693; scaffold372 TRF Tandem_Repeat 35792 35853 88 + . . scaffold372 GLEAN promoter 36572 37571 0.99989 + . ID=CGI_10009694; scaffold372 GLEAN mRNA 37572 40823 0.99989 + . ID=CGI_10009694; scaffold372 GLEAN promoter 41752 42751 0.811719 + . ID=CGI_10009695; scaffold372 GLEAN mRNA 42752 48768 0.811719 + . ID=CGI_10009695; scaffold372 TRF Tandem_Repeat 43725 43790 57 + . . scaffold372 TRF Tandem_Repeat 44674 44719 92 + . . scaffold372 GLEAN mRNA 49294 60567 1 - . ID=CGI_10009696; scaffold372 TRF Tandem_Repeat 56898 57133 309 + . . scaffold372 TRF Tandem_Repeat 57946 57982 74 + . . scaffold372 GLEAN promoter 60568 61567 1 - . ID=CGI_10009696; scaffold372 GLEAN mRNA 62627 79475 0.993584 - . ID=CGI_10009697; scaffold372 GLEAN promoter 79476 80475 0.993584 - . ID=CGI_10009697; scaffold372 TRF Tandem_Repeat 84750 85410 874 + . . scaffold372 TRF Tandem_Repeat 90992 91031 80 + . . scaffold372 GLEAN mRNA 93767 96232 1 - . ID=CGI_10009698; scaffold372 GLEAN promoter 96094 97093 0.740875 + . ID=CGI_10009699; scaffold372 GLEAN promoter 96233 97232 1 - . ID=CGI_10009698; scaffold372 GLEAN mRNA 97094 100626 0.740875 + . ID=CGI_10009699; scaffold372 GLEAN mRNA 102019 115164 0.52872 - . ID=CGI_10009700; scaffold372 GLEAN promoter 115165 116164 0.52872 - . ID=CGI_10009700; scaffold372 GLEAN promoter 124127 125126 0.925232 + . ID=CGI_10009701; scaffold372 GLEAN mRNA 125127 138166 0.925232 + . ID=CGI_10009701; scaffold372 GLEAN mRNA 130074 138126 0.615405 - . ID=CGI_10009702; scaffold372 TRF Tandem_Repeat 132089 132145 114 + . . scaffold372 TRF Tandem_Repeat 134074 134117 88 + . . scaffold372 GLEAN promoter 138127 139126 0.615405 - . ID=CGI_10009702; scaffold372 TRF Tandem_Repeat 140340 140371 64 + . . scaffold372 GLEAN mRNA 142552 142788 0.999372 - . ID=CGI_10009703; scaffold372 GLEAN promoter 142789 143788 0.999372 - . ID=CGI_10009703; scaffold372 TRF Tandem_Repeat 143510 143614 142 + . . scaffold372 GLEAN mRNA 144040 145441 0.999995 - . ID=CGI_10009704; scaffold372 GLEAN promoter 145442 146441 0.999995 - . ID=CGI_10009704; scaffold372 GLEAN mRNA 145665 151690 0.648553 - . ID=CGI_10009705; scaffold372 GLEAN promoter 151691 152690 0.648553 - . ID=CGI_10009705; scaffold372 GLEAN promoter 152223 153222 0.979236 + . ID=CGI_10009706; scaffold372 GLEAN mRNA 153223 155067 0.979236 + . ID=CGI_10009706; scaffold372 GLEAN promoter 156863 157862 0.991365 + . ID=CGI_10009707; scaffold372 TRF Tandem_Repeat 157427 157740 404 + . . scaffold372 GLEAN mRNA 157863 164474 0.991365 + . ID=CGI_10009707; scaffold372 TRF Tandem_Repeat 169775 169864 87 + . . scaffold372 GLEAN mRNA 173398 180404 1 - . ID=CGI_10009708; scaffold372 GLEAN promoter 180405 181404 1 - . ID=CGI_10009708; scaffold372 GLEAN mRNA 181685 183995 1 - . ID=CGI_10009709; scaffold372 TRF Tandem_Repeat 182418 182456 62 + . . scaffold372 GLEAN promoter 183996 184995 1 - . ID=CGI_10009709; scaffold372 WUBlastX DNA_Helitron 200402 200596 42 - . . scaffold372 GLEAN promoter 201417 202416 0.999393 + . ID=CGI_10009711; scaffold372 GLEAN mRNA 202417 203914 0.999393 + . ID=CGI_10009711; scaffold372 GLEAN promoter 203572 204571 0.79298 + . ID=CGI_10009712; scaffold372 GLEAN mRNA 204572 212895 0.79298 + . ID=CGI_10009712; scaffold372 TRF Tandem_Repeat 205989 206018 53 + . . scaffold372 TRF Tandem_Repeat 207109 207175 91 + . . scaffold372 TRF Tandem_Repeat 207117 207166 82 + . . scaffold372 TRF Tandem_Repeat 219738 219791 54 + . . scaffold372 GLEAN mRNA 221134 226119 0.977272 - . ID=CGI_10009713; scaffold372 GLEAN promoter 226120 227119 0.977272 - . ID=CGI_10009713; scaffold372 TRF Tandem_Repeat 227433 227464 55 + . . scaffold372 GLEAN mRNA 229774 237968 0.96929 - . ID=CGI_10009714; scaffold372 TRF Tandem_Repeat 233123 233185 126 + . . scaffold372 GLEAN promoter 237969 238968 0.96929 - . ID=CGI_10009714; scaffold372 TRF Tandem_Repeat 239433 239476 88 + . . scaffold372 WUBlastX LINE_Penelope 239802 240089 58 - . . scaffold372 WUBlastX LINE_Penelope 239910 240182 76 - . . scaffold372 WUBlastX LINE_Penelope 239925 240260 75 - . . scaffold37206 TRF Tandem_Repeat 5331 5355 50 + . . scaffold37206 GLEAN promoter 10134 11133 0.606704 + . ID=CGI_10002305; scaffold37206 TRF Tandem_Repeat 10804 10882 149 + . . scaffold37206 GLEAN mRNA 11134 25264 0.606704 + . ID=CGI_10002305; scaffold37206 TRF Tandem_Repeat 11475 11527 54 + . . scaffold37206 WUBlastX DNA_Merlin 14884 15117 110 - . . scaffold37206 TRF Tandem_Repeat 16603 17369 1037 + . . scaffold37206 TRF Tandem_Repeat 18541 19368 1014 + . . scaffold37206 TRF Tandem_Repeat 25546 26648 1345 + . . scaffold37214 GLEAN mRNA 38 3018 1 - . ID=CGI_10002306; scaffold37214 GLEAN promoter 3019 4018 1 - . ID=CGI_10002306; scaffold37248 GLEAN mRNA 4027 7215 1 - . ID=CGI_10002314; scaffold37248 GLEAN promoter 7216 8215 1 - . ID=CGI_10002314; scaffold37248 GLEAN promoter 9132 10131 0.995237 + . ID=CGI_10002315; scaffold37248 GLEAN mRNA 10132 11303 0.995237 + . ID=CGI_10002315; scaffold37248 GLEAN mRNA 13966 18053 0.544852 - . ID=CGI_10002316; scaffold37248 GLEAN promoter 17860 18859 0.541814 + . ID=CGI_10002317; scaffold37248 GLEAN promoter 18054 19053 0.544852 - . ID=CGI_10002316; scaffold37248 GLEAN mRNA 18860 33042 0.541814 + . ID=CGI_10002317; scaffold37248 GLEAN promoter 36020 37019 0.995084 + . ID=CGI_10002318; scaffold37248 GLEAN mRNA 37020 38284 0.995084 + . ID=CGI_10002318; scaffold37252 WUBlastX LINE_Penelope 11 1024 260 + . . scaffold37252 GLEAN promoter 2125 3124 0.999984 + . ID=CGI_10002312; scaffold37252 GLEAN mRNA 3125 3400 0.999984 + . ID=CGI_10002312; scaffold37252 WUBlastX DNA_IS4EU 5235 5723 89 + . . scaffold37252 WUBlastX DNA_IS4EU 5238 5645 150 + . . scaffold37252 WUBlastX DNA_IS4EU 6507 7139 261 + . . scaffold37252 WUBlastX DNA_Kolobok-IS4 7791 7835 34 - . . scaffold37252 WUBlastX DNA_IS4EU 7867 8142 185 - . . scaffold37252 WUBlastX DNA_IS4EU 8100 8606 264 - . . scaffold37252 WUBlastX DNA_IS4EU 9669 9755 39 - . . scaffold37252 WUBlastX DNA_IS4EU 10701 10910 72 - . . scaffold37252 TRF Tandem_Repeat 14572 14625 108 + . . scaffold37252 TRF Tandem_Repeat 16022 16076 56 + . . scaffold37252 TRF Tandem_Repeat 16025 16080 62 + . . scaffold37252 TRF Tandem_Repeat 16371 16419 89 + . . scaffold37252 TRF Tandem_Repeat 17477 17536 84 + . . scaffold37252 TRF Tandem_Repeat 17477 17536 66 + . . scaffold37252 WUBlastX LINE_L1 17861 18187 38 + . . scaffold37252 WUBlastX LINE_L1-Tx1 17933 18175 80 + . . scaffold37252 WUBlastX LINE_L1-Tx1 17948 18562 53 + . . scaffold37252 WUBlastX LINE_L1-Tx1 18463 18648 54 + . . scaffold37252 TRF Tandem_Repeat 38838 38879 84 + . . scaffold37278 GLEAN promoter 2466 3465 0.528485 + . ID=CGI_10002319; scaffold37278 GLEAN mRNA 3466 5265 0.528485 + . ID=CGI_10002319; scaffold37278 TRF Tandem_Repeat 6135 6159 50 + . . scaffold37278 WUBlastX LTR_DIRS 19447 20253 408 - . . scaffold37278 WUBlastX LTR_DIRS 20680 22452 844 - . . scaffold37278 TRF Tandem_Repeat 26314 27026 707 + . . scaffold37278 TRF Tandem_Repeat 28361 28667 295 + . . scaffold37278 TRF Tandem_Repeat 28992 29874 753 + . . scaffold37278 TRF Tandem_Repeat 28992 29874 848 + . . scaffold37278 GLEAN promoter 36862 37861 0.557099 + . ID=CGI_10002320; scaffold37278 GLEAN promoter 37766 38765 0.999064 + . ID=CGI_10002321; scaffold37278 GLEAN mRNA 37862 38320 0.557099 + . ID=CGI_10002320; scaffold37278 GLEAN mRNA 38766 40637 0.999064 + . ID=CGI_10002321; scaffold37278 TRF Tandem_Repeat 40933 40967 61 + . . scaffold37286 TRF Tandem_Repeat 20183 20207 50 + . . scaffold37286 TRF Tandem_Repeat 23640 23664 50 + . . scaffold37286 GLEAN promoter 24178 25177 0.499838 + . ID=CGI_10002324; scaffold37286 GLEAN mRNA 25178 36112 0.499838 + . ID=CGI_10002324; scaffold37286 TRF Tandem_Repeat 26039 26103 130 + . . scaffold37286 TRF Tandem_Repeat 30328 30354 54 + . . scaffold37286 TRF Tandem_Repeat 31119 31161 86 + . . scaffold37286 TRF Tandem_Repeat 31228 31254 54 + . . scaffold37286 WUBlastX LINE_L1-Tx1 37839 40001 852 - . . scaffold37286 WUBlastX LINE_L1-Tx1 39626 40561 322 - . . scaffold37286 WUBlastX LINE_RTE-BovB 40839 41012 27 - . . scaffold37286 WUBlastX LINE_RTE-BovB 41002 41175 35 - . . scaffold37290 WUBlastX LTR_Ngaro 3021 3476 245 - . . scaffold37290 WUBlastX LTR_Ngaro 3403 3858 172 - . . scaffold37290 WUBlastX LTR_Ngaro 3472 3936 156 - . . scaffold37290 WUBlastX LTR_Ngaro 3907 4152 138 - . . scaffold37290 WUBlastX LTR_Ngaro 5138 5986 548 - . . scaffold37290 WUBlastX LTR_Ngaro 5964 6296 215 - . . scaffold37290 WUBlastX LTR_Ngaro 5964 6437 159 - . . scaffold37290 WUBlastX LTR_Ngaro 6624 7133 200 - . . scaffold37290 WUBlastX LTR_Ngaro 6630 7049 231 - . . scaffold37292 TRF Tandem_Repeat 14107 14136 60 + . . scaffold37292 WUBlastX LINE_L1-Tx1 20730 24473 1852 - . . scaffold37292 TRF Tandem_Repeat 26034 26799 1048 + . . scaffold37292 WUBlastX DNA_TcMar-Tc1 34134 34343 103 - . . scaffold37292 WUBlastX DNA_TcMar-Tc1 34134 34424 72 - . . scaffold37292 WUBlastX DNA_TcMar-Tc1 34717 35331 151 - . . scaffold37292 WUBlastX DNA_TcMar-Tc1 34717 35478 147 - . . scaffold37292 TRF Tandem_Repeat 36063 36165 99 + . . scaffold37292 TRF Tandem_Repeat 36063 36162 90 + . . scaffold37292 TRF Tandem_Repeat 37863 37918 112 + . . scaffold373 WUBlastX LTR_Gypsy 10 78 36 - . . scaffold373 WUBlastX LTR_Gypsy 428 1636 39 - . . scaffold373 WUBlastX LTR_Gypsy-Cigr 612 698 44 - . . scaffold373 WUBlastX LTR_Gypsy 691 873 59 - . . scaffold373 WUBlastX LTR_Gypsy 721 1956 183 - . . scaffold373 WUBlastX LTR_Gypsy 1648 2127 108 - . . scaffold37308 GLEAN mRNA 3124 10078 0.537029 - . ID=CGI_10002333; scaffold37308 GLEAN promoter 10079 11078 0.537029 - . ID=CGI_10002333; scaffold37308 GLEAN mRNA 24209 42693 0.999781 - . ID=CGI_10002334; scaffold37308 GLEAN promoter 42694 43005 0.999781 - . ID=CGI_10002334; scaffold37344 TRF Tandem_Repeat 2636 2665 60 + . . scaffold37344 GLEAN promoter 3708 4707 0.999504 + . ID=CGI_10002330; scaffold37344 GLEAN mRNA 4708 13233 0.999504 + . ID=CGI_10002330; scaffold37344 TRF Tandem_Repeat 9146 9178 66 + . . scaffold37344 GLEAN promoter 13820 14819 1 + . ID=CGI_10002331; scaffold37344 GLEAN mRNA 14820 18785 1 + . ID=CGI_10002331; scaffold37344 GLEAN promoter 19156 20155 0.770733 + . ID=CGI_10002332; scaffold37344 GLEAN mRNA 20156 38026 0.770733 + . ID=CGI_10002332; scaffold37344 TRF Tandem_Repeat 24713 24765 106 + . . scaffold37344 TRF Tandem_Repeat 24962 25016 110 + . . scaffold37344 TRF Tandem_Repeat 26222 26248 54 + . . scaffold37344 TRF Tandem_Repeat 26987 27016 60 + . . scaffold37344 TRF Tandem_Repeat 34709 34746 67 + . . scaffold37344 WUBlastX LTR_Pao 42008 42880 829 - . . scaffold37358 TRF Tandem_Repeat 4812 4845 68 + . . scaffold37358 GLEAN mRNA 6120 15786 0.999188 - . ID=CGI_10002325; scaffold37358 TRF Tandem_Repeat 11634 11688 110 + . . scaffold37358 GLEAN promoter 12538 13537 0.841067 + . ID=CGI_10002326; scaffold37358 GLEAN mRNA 13538 28627 0.841067 + . ID=CGI_10002326; scaffold37358 GLEAN promoter 15787 16786 0.999188 - . ID=CGI_10002325; scaffold37358 TRF Tandem_Repeat 16088 16306 303 + . . scaffold37358 TRF Tandem_Repeat 16171 16353 87 + . . scaffold37358 TRF Tandem_Repeat 17958 18005 96 + . . scaffold37358 TRF Tandem_Repeat 22313 22353 73 + . . scaffold37358 TRF Tandem_Repeat 22313 22354 57 + . . scaffold37358 TRF Tandem_Repeat 32858 33176 310 + . . scaffold37358 TRF Tandem_Repeat 32860 33176 285 + . . scaffold37358 TRF Tandem_Repeat 32926 33182 244 + . . scaffold37358 TRF Tandem_Repeat 33849 34195 342 + . . scaffold37358 TRF Tandem_Repeat 33849 34196 345 + . . scaffold37358 TRF Tandem_Repeat 33854 34195 407 + . . scaffold37358 WUBlastX LINE_CR1 35696 36079 101 - . . scaffold37358 WUBlastX LINE_CR1 35708 36268 63 - . . scaffold37358 WUBlastX LINE_CR1-L2 35711 36145 95 - . . scaffold37358 WUBlastX LINE_CR1 35717 35992 144 - . . scaffold37358 WUBlastX LINE_CR1 36749 37582 326 - . . scaffold37358 WUBlastX LINE_CR1 36881 37582 574 - . . scaffold37358 WUBlastX LINE_CR1 37591 37902 250 - . . scaffold37358 WUBlastX LINE_CR1 37866 38966 600 - . . scaffold37358 WUBlastX LINE_CR1 39963 40412 42 - . . scaffold37358 WUBlastX LINE_I 40104 40397 67 - . . scaffold37358 WUBlastX LINE_CR1 40152 40472 125 - . . scaffold37358 WUBlastX LINE_CR1 40182 40700 33 - . . scaffold37358 WUBlastX LINE_CR1 40188 40442 178 - . . scaffold37378 TRF Tandem_Repeat 196 227 64 + . . scaffold37378 GLEAN mRNA 867 2832 0.997036 - . ID=CGI_10002345; scaffold37378 GLEAN promoter 2833 3832 0.997036 - . ID=CGI_10002345; scaffold37378 GLEAN mRNA 8384 11446 0.61954 - . ID=CGI_10002346; scaffold37378 GLEAN promoter 11447 12446 0.61954 - . ID=CGI_10002346; scaffold37378 WUBlastX DNA_MuDR 28076 28387 24 + . . scaffold37378 WUBlastX DNA 28214 28462 34 + . . scaffold37378 WUBlastX DNA_MuDR 28309 28719 96 + . . scaffold37378 GLEAN promoter 31609 32608 1 + . ID=CGI_10002347; scaffold37378 GLEAN mRNA 32609 39351 1 + . ID=CGI_10002347; scaffold37378 TRF Tandem_Repeat 41690 41741 104 + . . scaffold37378 GLEAN mRNA 41912 42693 1 - . ID=CGI_10002348; scaffold37378 GLEAN promoter 42694 43443 1 - . ID=CGI_10002348; scaffold37378 TRF Tandem_Repeat 42890 42958 120 + . . scaffold37386 GLEAN promoter 589 1588 0.999676 + . ID=CGI_10002339; scaffold37386 GLEAN mRNA 1589 17710 0.999676 + . ID=CGI_10002339; scaffold37386 TRF Tandem_Repeat 12120 12837 1149 + . . scaffold37386 TRF Tandem_Repeat 17755 17780 52 + . . scaffold37386 GLEAN promoter 18021 19020 1 + . ID=CGI_10002340; scaffold37386 GLEAN mRNA 19021 20524 1 + . ID=CGI_10002340; scaffold37386 TRF Tandem_Repeat 21657 21705 62 + . . scaffold37386 TRF Tandem_Repeat 21657 21705 71 + . . scaffold37386 GLEAN promoter 22904 23903 1 + . ID=CGI_10002341; scaffold37386 GLEAN mRNA 23904 33898 1 + . ID=CGI_10002341; scaffold37386 WUBlastX LINE_L2 35010 35333 94 - . . scaffold37386 WUBlastX LINE_CR1 35115 35333 146 - . . scaffold37386 WUBlastX LINE_L2 35154 35438 79 - . . scaffold37386 WUBlastX LINE_CR1 35404 35526 20 - . . scaffold37386 GLEAN promoter 39906 40905 0.999676 + . ID=CGI_10002342; scaffold37386 GLEAN mRNA 40906 42480 0.999676 + . ID=CGI_10002342; scaffold37396 GLEAN promoter 1 903 0.999992 + . ID=CGI_10002349; scaffold37396 GLEAN mRNA 904 3095 0.999992 + . ID=CGI_10002349; scaffold37396 GLEAN promoter 2253 3252 0.99912 + . ID=CGI_10002350; scaffold37396 GLEAN mRNA 3253 9998 0.99912 + . ID=CGI_10002350; scaffold37396 GLEAN mRNA 8679 25370 0.660355 - . ID=CGI_10002351; scaffold37396 GLEAN promoter 25371 26370 0.660355 - . ID=CGI_10002351; scaffold37396 GLEAN promoter 29739 30738 0.999929 + . ID=CGI_10002352; scaffold37396 GLEAN mRNA 30739 43455 0.999929 + . ID=CGI_10002352; scaffold374 TRF Tandem_Repeat 32421 32480 102 + . . scaffold374 TRF Tandem_Repeat 32754 32851 151 + . . scaffold374 TRF Tandem_Repeat 42161 42223 126 + . . scaffold374 TRF Tandem_Repeat 51393 51464 144 + . . scaffold374 TRF Tandem_Repeat 52737 52791 56 + . . scaffold374 TRF Tandem_Repeat 52740 52795 62 + . . scaffold374 GLEAN promoter 53604 54603 0.696664 + . ID=CGI_10018717; scaffold374 GLEAN mRNA 54604 61179 0.696664 + . ID=CGI_10018717; scaffold374 WUBlastX LINE_L1-Tx1 55887 56090 56 + . . scaffold374 TRF Tandem_Repeat 57841 57889 98 + . . scaffold374 WUBlastX DNA_TcMar-Fot1 102140 102904 309 - . . scaffold374 WUBlastX DNA_TcMar-Fot1 103047 103310 87 - . . scaffold374 GLEAN mRNA 105384 109049 0.993811 - . ID=CGI_10018718; scaffold374 GLEAN promoter 109050 110049 0.993811 - . ID=CGI_10018718; scaffold374 TRF Tandem_Repeat 113430 113528 191 + . . scaffold374 TRF Tandem_Repeat 118599 118696 65 + . . scaffold374 WUBlastX LINE_L2 125013 125459 92 - . . scaffold374 WUBlastX LINE_CR1-L2 125438 125713 111 - . . scaffold374 WUBlastX LINE_CR1-L2 125501 125713 118 - . . scaffold374 WUBlastX LINE_CR1-L2 125743 126855 803 - . . scaffold374 WUBlastX LINE_CR1 125743 127134 354 - . . scaffold374 TRF Tandem_Repeat 135954 136220 378 + . . scaffold374 GLEAN mRNA 164183 170659 0.970084 - . ID=CGI_10018719; scaffold374 WUBlastX DNA_hAT-Tip100 166335 166550 58 - . . scaffold374 WUBlastX DNA_hAT-Tip100 166640 166855 102 - . . scaffold374 WUBlastX DNA_hAT-Tip100 166679 166951 45 - . . scaffold374 WUBlastX DNA_hAT-Tip100 167048 167818 142 - . . scaffold374 GLEAN promoter 170660 171659 0.970084 - . ID=CGI_10018719; scaffold374 TRF Tandem_Repeat 173142 173214 130 + . . scaffold374 TRF Tandem_Repeat 173531 173589 118 + . . scaffold374 TRF Tandem_Repeat 175460 175531 126 + . . scaffold374 TRF Tandem_Repeat 177600 177645 92 + . . scaffold374 WUBlastX LINE_Penelope 185003 185335 75 - . . scaffold374 TRF Tandem_Repeat 189163 189215 106 + . . scaffold374 TRF Tandem_Repeat 192510 192606 110 + . . scaffold374 WUBlastX LINE_RTE-BovB 197983 198147 43 - . . scaffold374 WUBlastX LINE_RTE-BovB 198033 198929 566 - . . scaffold374 WUBlastX LINE_RTE-BovB 198854 199216 425 - . . scaffold374 WUBlastX LINE_Penelope 199206 199880 61 - . . scaffold374 WUBlastX LINE_Penelope 199209 199727 134 - . . scaffold374 WUBlastX LINE_Penelope 199729 200565 39 - . . scaffold374 WUBlastX LINE_Penelope 202521 202688 20 - . . scaffold374 WUBlastX LINE_Penelope 202551 202748 22 - . . scaffold374 WUBlastX LINE_Penelope 202675 203322 148 - . . scaffold374 WUBlastX LINE_Penelope 202903 203409 24 - . . scaffold374 TRF Tandem_Repeat 248239 248268 60 + . . scaffold374 WUBlastX RC_Helitron 252636 255083 266 + . . scaffold374 WUBlastX RC_Helitron 253605 260255 2971 + . . scaffold374 WUBlastX RC_Helitron 255663 260243 2981 + . . scaffold374 WUBlastX LINE_L2 259596 260378 48 + . . scaffold374 WUBlastX DNA_TcMar-Tc2 277302 277391 34 - . . scaffold374 WUBlastX DNA_TcMar-Fot1 277430 277918 48 - . . scaffold374 WUBlastX DNA_TcMar-Tc2 277481 277873 100 - . . scaffold374 WUBlastX DNA_TcMar-Fot1 278073 278171 24 - . . scaffold374 WUBlastX DNA_TcMar-Tc2 278210 278512 26 - . . scaffold374 TRF Tandem_Repeat 282277 282329 52 + . . scaffold374 TRF Tandem_Repeat 286776 286835 50 + . . scaffold374 WUBlastX LTR_Ngaro 301905 302177 59 - . . scaffold374 WUBlastX LTR_Ngaro 301977 302174 89 - . . scaffold374 WUBlastX LTR_Gypsy 317255 318583 1120 - . . scaffold374 WUBlastX LTR_Gypsy 318585 320543 1249 - . . scaffold374 WUBlastX LTR_Gypsy 320597 321067 255 - . . scaffold374 WUBlastX LTR_Gypsy 321355 321777 41 - . . scaffold374 WUBlastX LTR_Gypsy 321397 321726 59 - . . scaffold374 WUBlastX LTR_Gypsy 322604 322777 39 - . . scaffold374 WUBlastX LTR_Gypsy 323358 323576 133 - . . scaffold374 WUBlastX LTR_Gypsy 323557 323679 45 - . . scaffold374 TRF Tandem_Repeat 328546 328592 60 + . . scaffold374 TRF Tandem_Repeat 336445 336503 91 + . . scaffold374 TRF Tandem_Repeat 344690 344748 82 + . . scaffold374 TRF Tandem_Repeat 344713 344768 67 + . . scaffold374 TRF Tandem_Repeat 357416 357503 113 + . . scaffold374 GLEAN mRNA 361449 362711 0.775391 - . ID=CGI_10018720; scaffold374 GLEAN promoter 362712 363711 0.775391 - . ID=CGI_10018720; scaffold374 GLEAN promoter 365575 366574 0.447148 + . ID=CGI_10018721; scaffold374 GLEAN mRNA 366575 367648 0.447148 + . ID=CGI_10018721; scaffold374 WUBlastX LINE_I 367229 367318 24 + . . scaffold374 TRF Tandem_Repeat 369372 369453 51 + . . scaffold374 TRF Tandem_Repeat 371890 371930 82 + . . scaffold374 TRF Tandem_Repeat 375049 375137 105 + . . scaffold374 TRF Tandem_Repeat 379617 379677 50 + . . scaffold374 GLEAN promoter 379625 380624 0.733495 + . ID=CGI_10018722; scaffold374 GLEAN mRNA 380625 380816 0.733495 + . ID=CGI_10018722; scaffold374 GLEAN mRNA 382134 386780 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 382912 382961 52 + . . scaffold374 TRF Tandem_Repeat 384445 384890 291 + . . scaffold374 TRF Tandem_Repeat 384457 384887 234 + . . scaffold374 TRF Tandem_Repeat 384721 384941 217 + . . scaffold374 TRF Tandem_Repeat 384811 384962 111 + . . scaffold374 TRF Tandem_Repeat 385121 385263 162 + . . scaffold374 TRF Tandem_Repeat 385162 385263 150 + . . scaffold374 GLEAN promoter 386781 387780 0.971738 - . ID=CGI_10018723; scaffold374 TRF Tandem_Repeat 389306 389393 126 + . . scaffold374 TRF Tandem_Repeat 389587 389620 50 + . . scaffold374 GLEAN mRNA 405430 416354 0.985153 - . ID=CGI_10018724; scaffold374 WUBlastX LINE_RTE-BovB 405976 406953 158 + . . scaffold374 TRF Tandem_Repeat 407594 407744 225 + . . scaffold374 TRF Tandem_Repeat 411040 411078 78 + . . scaffold374 TRF Tandem_Repeat 411180 411220 82 + . . scaffold374 GLEAN promoter 416355 417354 0.985153 - . ID=CGI_10018724; scaffold374 TRF Tandem_Repeat 429227 429308 89 + . . scaffold374 TRF Tandem_Repeat 429227 429308 87 + . . scaffold374 WUBlastX LTR_Gypsy 434042 434092 31 - . . scaffold374 WUBlastX LTR_Gypsy 434063 434401 97 - . . scaffold374 WUBlastX LTR_Gypsy 434114 434371 127 - . . scaffold374 WUBlastX LTR_Gypsy 434120 434575 127 - . . scaffold374 TRF Tandem_Repeat 436035 436081 94 + . . scaffold374 TRF Tandem_Repeat 445647 445697 77 + . . scaffold374 TRF Tandem_Repeat 445847 445879 66 + . . scaffold374 TRF Tandem_Repeat 445877 445913 74 + . . scaffold374 GLEAN promoter 448721 449720 0.5 + . ID=CGI_10018725; scaffold374 GLEAN mRNA 449721 451382 0.5 + . ID=CGI_10018725; scaffold374 TRF Tandem_Repeat 451665 451777 178 + . . scaffold374 TRF Tandem_Repeat 454148 454215 102 + . . scaffold374 TRF Tandem_Repeat 458794 458823 51 + . . scaffold374 TRF Tandem_Repeat 463109 463468 398 + . . scaffold374 TRF Tandem_Repeat 480231 480272 84 + . . scaffold374 TRF Tandem_Repeat 486405 486442 58 + . . scaffold374 TRF Tandem_Repeat 497630 497696 80 + . . scaffold374 TRF Tandem_Repeat 498191 498285 91 + . . scaffold374 TRF Tandem_Repeat 498456 498534 149 + . . scaffold374 TRF Tandem_Repeat 500509 500561 79 + . . scaffold374 GLEAN promoter 505425 506424 0.702338 + . ID=CGI_10018726; scaffold374 WUBlastX DNA_Maverick 505837 505950 36 + . . scaffold374 WUBlastX DNA_Maverick 505947 506264 283 + . . scaffold374 WUBlastX DNA_Maverick 505953 506399 234 + . . scaffold374 GLEAN mRNA 506425 540521 0.702338 + . ID=CGI_10018726; scaffold374 TRF Tandem_Repeat 518418 518475 116 + . . scaffold374 TRF Tandem_Repeat 524915 524955 57 + . . scaffold374 TRF Tandem_Repeat 538908 538968 50 + . . scaffold374 TRF Tandem_Repeat 543496 543531 63 + . . scaffold374 GLEAN mRNA 544925 557806 0.992483 - . ID=CGI_10018727; scaffold374 TRF Tandem_Repeat 551318 551721 151 + . . scaffold374 TRF Tandem_Repeat 551346 552438 497 + . . scaffold374 TRF Tandem_Repeat 551746 552438 430 + . . scaffold374 TRF Tandem_Repeat 551793 551868 52 + . . scaffold374 GLEAN promoter 557807 558806 0.992483 - . ID=CGI_10018727; scaffold374 TRF Tandem_Repeat 560924 560977 54 + . . scaffold374 TRF Tandem_Repeat 560931 560986 67 + . . scaffold374 GLEAN mRNA 562669 563502 0.733461 - . ID=CGI_10018728; scaffold374 GLEAN promoter 563503 564502 0.733461 - . ID=CGI_10018728; scaffold37400 GLEAN mRNA 1873 2532 0.666944 - . ID=CGI_10002355; scaffold37400 GLEAN promoter 2373 3372 1 + . ID=CGI_10002356; scaffold37400 GLEAN promoter 2533 3532 0.666944 - . ID=CGI_10002355; scaffold37400 GLEAN mRNA 3373 3615 1 + . ID=CGI_10002356; scaffold37400 GLEAN mRNA 7374 10346 0.533393 - . ID=CGI_10002357; scaffold37400 GLEAN promoter 10347 11346 0.533393 - . ID=CGI_10002357; scaffold37408 WUBlastX LINE_L1-Tx1 437 1663 159 + . . scaffold37408 WUBlastX LTR_DIRS 3460 4089 210 + . . scaffold37408 WUBlastX LTR_DIRS 3652 4224 260 + . . scaffold37408 WUBlastX LTR_DIRS 4240 4554 59 + . . scaffold37408 WUBlastX LTR_DIRS 4309 4563 92 + . . scaffold37408 WUBlastX LTR_DIRS 4553 5122 466 + . . scaffold37408 WUBlastX LTR_DIRS 4553 5236 359 + . . scaffold37408 WUBlastX LINE_L2 43156 43368 53 - . . scaffold37408 WUBlastX LINE_L2 43332 43814 136 - . . scaffold37408 WUBlastX LINE_CR1-L2 43530 43805 143 - . . scaffold37418 GLEAN promoter 1 786 1 + . ID=CGI_10002367; scaffold37418 GLEAN mRNA 787 6044 1 + . ID=CGI_10002367; scaffold37418 GLEAN promoter 33293 34292 0.999991 + . ID=CGI_10002368; scaffold37418 GLEAN mRNA 34293 37979 0.999991 + . ID=CGI_10002368; scaffold37422 WUBlastX DNA_TcMar-Tc1 1699 2094 75 - . . scaffold37422 WUBlastX DNA_TcMar-Tc1 1771 1992 76 - . . scaffold37422 WUBlastX DNA_TcMar-Tc1 2172 2381 46 - . . scaffold37422 TRF Tandem_Repeat 15285 16542 1520 + . . scaffold37422 TRF Tandem_Repeat 40061 40110 100 + . . scaffold37422 WUBlastX DNA_TcMar-Tc1 40801 41403 91 - . . scaffold37422 WUBlastX DNA_TcMar-Tc1 41029 41403 91 - . . scaffold37422 TRF Tandem_Repeat 41460 41507 51 + . . scaffold37422 TRF Tandem_Repeat 41460 41504 72 + . . scaffold37422 TRF Tandem_Repeat 43736 43820 161 + . . scaffold37424 WUBlastX DNA_Harbinger 11455 11574 35 + . . scaffold37424 WUBlastX DNA_Harbinger 11588 12178 320 + . . scaffold37424 WUBlastX DNA_Harbinger 12931 13098 42 + . . scaffold37424 WUBlastX DNA_Harbinger 12967 13161 90 + . . scaffold37424 GLEAN mRNA 14406 15898 1 - . ID=CGI_10002371; scaffold37424 WUBlastX DNA_Harbinger 15773 15868 25 - . . scaffold37424 WUBlastX DNA_Harbinger 15867 16082 59 - . . scaffold37424 GLEAN promoter 15899 16898 1 - . ID=CGI_10002371; scaffold37424 TRF Tandem_Repeat 18374 18422 73 + . . scaffold37424 TRF Tandem_Repeat 23242 23290 98 + . . scaffold37424 GLEAN mRNA 29186 33181 0.457196 - . ID=CGI_10002372; scaffold37424 GLEAN promoter 33182 34181 0.457196 - . ID=CGI_10002372; scaffold37424 TRF Tandem_Repeat 38148 38305 95 + . . scaffold37424 TRF Tandem_Repeat 38168 38305 165 + . . scaffold37424 TRF Tandem_Repeat 38249 38304 55 + . . scaffold37424 TRF Tandem_Repeat 38690 38806 182 + . . scaffold37426 WUBlastX LTR_DIRS 4528 5301 25 + . . scaffold37426 WUBlastX LTR_DIRS 4795 5301 90 + . . scaffold37426 WUBlastX LTR_DIRS 4969 5301 121 + . . scaffold37426 WUBlastX LTR_DIRS 5222 5725 78 + . . scaffold37426 WUBlastX LTR_Gypsy 5791 5865 22 + . . scaffold37426 WUBlastX LTR_DIRS 5836 5877 27 + . . scaffold37426 WUBlastX LTR_DIRS 5843 7576 618 + . . scaffold37426 WUBlastX LTR_DIRS 6518 8179 693 + . . scaffold37426 WUBlastX LTR_DIRS 8164 8589 150 + . . scaffold37426 TRF Tandem_Repeat 9284 9408 84 + . . scaffold37426 TRF Tandem_Repeat 9296 9506 108 + . . scaffold37426 TRF Tandem_Repeat 9296 9401 112 + . . scaffold37426 TRF Tandem_Repeat 9316 9548 213 + . . scaffold37426 TRF Tandem_Repeat 9341 9464 62 + . . scaffold37426 TRF Tandem_Repeat 9469 9548 56 + . . scaffold37426 WUBlastX LTR_DIRS 32413 32943 109 + . . scaffold37426 WUBlastX LTR_DIRS 32918 33037 34 + . . scaffold37426 TRF Tandem_Repeat 36133 36181 89 + . . scaffold37426 TRF Tandem_Repeat 37167 37203 74 + . . scaffold37426 TRF Tandem_Repeat 40409 40433 50 + . . scaffold37428 GLEAN promoter 1 57 1 + . ID=CGI_10002369; scaffold37428 GLEAN mRNA 58 4086 1 + . ID=CGI_10002369; scaffold37428 GLEAN promoter 35636 36635 0.99828 + . ID=CGI_10002370; scaffold37428 GLEAN mRNA 36636 41509 0.99828 + . ID=CGI_10002370; scaffold37430 TRF Tandem_Repeat 7952 7995 88 + . . scaffold37430 GLEAN promoter 24525 25524 0.539363 + . ID=CGI_10002358; scaffold37430 GLEAN mRNA 25525 41907 0.539363 + . ID=CGI_10002358; scaffold37430 TRF Tandem_Repeat 26545 26581 56 + . . scaffold37430 WUBlastX LTR_Pao 37967 38206 34 - . . scaffold37430 WUBlastX LTR_Pao 38048 38206 79 - . . scaffold37430 WUBlastX LTR_Pao 38082 38456 141 - . . scaffold37430 WUBlastX LTR_Pao 38154 38459 205 - . . scaffold37430 WUBlastX LTR_Pao 38217 38474 229 - . . scaffold37430 WUBlastX LTR_Pao 38473 40479 463 - . . scaffold37430 WUBlastX LTR_Pao 38473 39795 579 - . . scaffold37430 WUBlastX LTR_Pao 40048 40560 218 - . . scaffold37430 WUBlastX LTR_Pao 40482 40640 123 - . . scaffold37430 WUBlastX LTR_Pao 40634 41521 214 - . . scaffold37430 WUBlastX LTR_Pao 40634 41149 225 - . . scaffold37430 WUBlastX LTR_Pao 41134 41742 142 - . . scaffold37430 WUBlastX LTR_Pao 42261 42371 25 - . . scaffold37430 WUBlastX LTR_Pao 42322 42726 202 - . . scaffold37430 WUBlastX LTR_Pao 42761 43081 82 - . . scaffold37430 WUBlastX LTR_Pao 42818 43177 26 - . . scaffold37432 WUBlastX LTR_Pao 1 513 241 + . . scaffold37432 WUBlastX LTR_Pao 25 450 247 + . . scaffold37432 WUBlastX LINE_L1-Tx1 2238 3239 116 - . . scaffold37432 WUBlastX LINE_L1-Tx1 3227 3460 145 - . . scaffold37432 WUBlastX LINE_L1-Tx1 3227 3553 107 - . . scaffold37432 WUBlastX LINE_L1 3227 3502 134 - . . scaffold37432 WUBlastX LINE_L1-Tx1 4281 4412 28 - . . scaffold37432 TRF Tandem_Repeat 33162 33234 87 + . . scaffold37432 GLEAN mRNA 37216 38288 0.999661 - . ID=CGI_10002364; scaffold37432 GLEAN promoter 38289 39288 0.999661 - . ID=CGI_10002364; scaffold37432 TRF Tandem_Repeat 38978 39026 98 + . . scaffold37436 TRF Tandem_Repeat 1292 1358 89 + . . scaffold37436 TRF Tandem_Repeat 1855 1898 88 + . . scaffold37436 TRF Tandem_Repeat 1896 1928 66 + . . scaffold37436 TRF Tandem_Repeat 2116 2158 86 + . . scaffold37436 TRF Tandem_Repeat 4547 4613 89 + . . scaffold37436 GLEAN promoter 8812 9811 0.0600399 + . ID=CGI_10002379; scaffold37436 GLEAN mRNA 9812 25876 0.0600399 + . ID=CGI_10002379; scaffold37436 TRF Tandem_Repeat 11081 11139 118 + . . scaffold37436 WUBlastX DNA_TcMar-Tc1 12349 13350 458 - . . scaffold37436 TRF Tandem_Repeat 17249 17290 84 + . . scaffold37436 TRF Tandem_Repeat 37993 38019 54 + . . scaffold37436 WUBlastX LTR_DIRS 43327 44388 266 + . . scaffold37438 TRF Tandem_Repeat 2264 2309 92 + . . scaffold37438 WUBlastX DNA_TcMar-Tc1 3460 4266 51 - . . scaffold37438 TRF Tandem_Repeat 5593 5652 66 + . . scaffold37438 TRF Tandem_Repeat 5593 5652 84 + . . scaffold37438 TRF Tandem_Repeat 11754 11977 304 + . . scaffold37438 TRF Tandem_Repeat 11756 11977 264 + . . scaffold37438 TRF Tandem_Repeat 39943 40615 996 + . . scaffold37438 WUBlastX LINE_L1-Tx1 40694 41395 86 - . . scaffold37460 GLEAN promoter 1 844 0.911515 + . ID=CGI_10002359; scaffold37460 GLEAN mRNA 845 15855 0.911515 + . ID=CGI_10002359; scaffold37460 GLEAN mRNA 17449 24538 0.999919 - . ID=CGI_10002360; scaffold37460 GLEAN promoter 24539 25538 0.999919 - . ID=CGI_10002360; scaffold37460 GLEAN promoter 27037 28036 0.648556 + . ID=CGI_10002361; scaffold37460 GLEAN mRNA 28037 29638 0.648556 + . ID=CGI_10002361; scaffold37460 GLEAN mRNA 32078 35818 1 - . ID=CGI_10002362; scaffold37460 GLEAN promoter 34184 35183 0.889923 + . ID=CGI_10002363; scaffold37460 GLEAN mRNA 35184 43197 0.889923 + . ID=CGI_10002363; scaffold37460 GLEAN promoter 35819 36818 1 - . ID=CGI_10002362; scaffold37468 TRF Tandem_Repeat 7706 7747 84 + . . scaffold37468 WUBlastX LTR_Gypsy 30700 31527 300 + . . scaffold37468 WUBlastX LTR_Gypsy 30700 31341 490 + . . scaffold37468 WUBlastX LTR_Gypsy 31588 31632 26 + . . scaffold37468 WUBlastX LTR_Gypsy-Cigr 31625 33151 511 + . . scaffold37468 WUBlastX LTR_Gypsy 31658 32917 842 + . . scaffold37472 GLEAN promoter 629 1628 0.999786 + . ID=CGI_10002390; scaffold37472 GLEAN mRNA 1629 29724 0.999786 + . ID=CGI_10002390; scaffold37472 TRF Tandem_Repeat 3289 4071 1086 + . . scaffold37472 TRF Tandem_Repeat 4539 4878 353 + . . scaffold37472 TRF Tandem_Repeat 5342 6004 790 + . . scaffold37472 TRF Tandem_Repeat 6466 6805 355 + . . scaffold37472 TRF Tandem_Repeat 23043 23110 136 + . . scaffold37472 WUBlastX LINE_CR1 29596 29694 44 + . . scaffold37472 WUBlastX LINE_CR1 29614 29694 56 + . . scaffold37472 WUBlastX LINE_CR1 29693 29791 36 + . . scaffold37472 WUBlastX LINE_CR1 29808 29987 40 + . . scaffold37472 WUBlastX LINE_CR1 29856 29981 48 + . . scaffold37472 WUBlastX LINE_CR1 29889 30005 36 + . . scaffold37472 WUBlastX LINE_L1-Tx1 30503 30853 25 + . . scaffold37472 WUBlastX LINE_L1-Tx1 30574 30681 47 + . . scaffold37472 WUBlastX LINE_L1-Tx1 30668 30853 61 + . . scaffold37472 WUBlastX LINE_L1-Tx1 30698 30853 92 + . . scaffold37472 WUBlastX LINE_L1 30701 30913 81 + . . scaffold37472 WUBlastX LINE_L1 30704 30961 51 + . . scaffold37472 WUBlastX LINE_L1 30843 31412 42 + . . scaffold37472 WUBlastX LINE_L1-Tx1 31597 31995 81 + . . scaffold37472 WUBlastX LINE_L1-Tx1 32051 32419 41 + . . scaffold37472 TRF Tandem_Repeat 32949 33022 127 + . . scaffold37472 TRF Tandem_Repeat 38699 38749 57 + . . scaffold37488 GLEAN promoter 21375 22374 1 + . ID=CGI_10002383; scaffold37488 GLEAN mRNA 22375 23643 1 + . ID=CGI_10002383; scaffold37498 GLEAN promoter 147 1146 0.728633 + . ID=CGI_10002388; scaffold37498 GLEAN mRNA 1147 2963 0.728633 + . ID=CGI_10002388; scaffold37500 GLEAN mRNA 235 1397 1 - . ID=CGI_10002380; scaffold37500 GLEAN promoter 1398 2397 1 - . ID=CGI_10002380; scaffold37500 GLEAN mRNA 3122 8833 0.619262 - . ID=CGI_10002381; scaffold37500 TRF Tandem_Repeat 3316 3409 120 + . . scaffold37500 WUBlastX DNA_Chapaev 3929 4069 34 - . . scaffold37500 GLEAN promoter 8834 9833 0.619262 - . ID=CGI_10002381; scaffold37500 TRF Tandem_Repeat 13492 13640 88 + . . scaffold37500 TRF Tandem_Repeat 14230 14378 88 + . . scaffold37500 TRF Tandem_Repeat 15381 16181 682 + . . scaffold37500 GLEAN mRNA 16467 40519 0.193393 - . ID=CGI_10002382; scaffold37500 WUBlastX LTR_Gypsy 18299 18514 24 - . . scaffold37500 TRF Tandem_Repeat 25047 25140 118 + . . scaffold37500 TRF Tandem_Repeat 25760 25855 75 + . . scaffold37500 WUBlastX LINE_RTE-X 26760 26795 22 - . . scaffold37500 WUBlastX LINE_L2 27306 28184 479 - . . scaffold37500 WUBlastX LINE_L2 28172 28699 321 - . . scaffold37500 WUBlastX LINE_L2 28678 29166 277 - . . scaffold37500 WUBlastX LINE_L2 29154 30365 464 - . . scaffold37500 WUBlastX LINE_CR1-L2 29889 30452 54 - . . scaffold37500 WUBlastX LINE_L2 31366 31752 92 - . . scaffold37500 WUBlastX LINE_CR1-L2 31402 31680 99 - . . scaffold37500 TRF Tandem_Repeat 32836 32886 102 + . . scaffold37500 TRF Tandem_Repeat 33328 33401 148 + . . scaffold37500 GLEAN promoter 40520 41519 0.193393 - . ID=CGI_10002382; scaffold37500 TRF Tandem_Repeat 41520 41679 266 + . . scaffold37500 TRF Tandem_Repeat 41520 41679 286 + . . scaffold37508 TRF Tandem_Repeat 363 741 587 + . . scaffold37508 GLEAN mRNA 9519 30641 0.992866 - . ID=CGI_10002397; scaffold37508 TRF Tandem_Repeat 18510 18546 74 + . . scaffold37508 TRF Tandem_Repeat 22590 22632 50 + . . scaffold37508 TRF Tandem_Repeat 22595 22637 50 + . . scaffold37508 GLEAN promoter 30642 31641 0.992866 - . ID=CGI_10002397; scaffold37508 WUBlastX LTR_Gypsy 32999 33442 118 - . . scaffold37508 WUBlastX LTR_Gypsy 33438 33929 386 - . . scaffold37508 WUBlastX LTR_Gypsy 33444 34028 300 - . . scaffold37508 WUBlastX LTR_Gypsy 33624 34118 68 - . . scaffold37508 TRF Tandem_Repeat 35637 35662 52 + . . scaffold37512 GLEAN promoter 1 586 1 + . ID=CGI_10002384; scaffold37512 GLEAN mRNA 587 1926 1 + . ID=CGI_10002384; scaffold37512 GLEAN mRNA 3441 12710 1 - . ID=CGI_10002385; scaffold37512 GLEAN promoter 12711 13710 1 - . ID=CGI_10002385; scaffold37512 GLEAN mRNA 13803 29473 0.999675 - . ID=CGI_10002386; scaffold37512 GLEAN promoter 29474 30473 0.999675 - . ID=CGI_10002386; scaffold37516 GLEAN promoter 19407 20406 1 + . ID=CGI_10002391; scaffold37516 GLEAN mRNA 20407 29112 1 + . ID=CGI_10002391; scaffold37516 GLEAN mRNA 30392 33104 0.650997 - . ID=CGI_10002392; scaffold37516 GLEAN promoter 30456 31455 1 + . ID=CGI_10002393; scaffold37516 GLEAN mRNA 31456 35453 1 + . ID=CGI_10002393; scaffold37516 GLEAN promoter 33105 34104 0.650997 - . ID=CGI_10002392; scaffold37520 TRF Tandem_Repeat 1796 1880 170 + . . scaffold37520 TRF Tandem_Repeat 4395 4466 135 + . . scaffold37520 TRF Tandem_Repeat 25782 25910 98 + . . scaffold37520 GLEAN mRNA 28214 37375 0.990764 - . ID=CGI_10002389; scaffold37520 GLEAN promoter 37376 38375 0.990764 - . ID=CGI_10002389; scaffold37520 WUBlastX DNA_Harbinger 40617 41216 133 - . . scaffold37520 WUBlastX DNA_Harbinger 40647 41153 161 - . . scaffold37520 WUBlastX DNA_Harbinger 41122 41487 80 - . . scaffold37520 WUBlastX DNA_Harbinger 41137 41376 83 - . . scaffold37532 WUBlastX LINE_CR1-L2 1673 1936 61 + . . scaffold37532 WUBlastX LINE_L1 2268 2306 22 + . . scaffold37532 WUBlastX LINE_L1 2560 3414 80 + . . scaffold37532 WUBlastX LINE_L2 2746 4443 1234 + . . scaffold37532 WUBlastX LINE_CR1-L2 4512 4598 21 + . . scaffold37532 TRF Tandem_Repeat 5164 5207 88 + . . scaffold37532 GLEAN mRNA 6697 6987 1 - . ID=CGI_10002398; scaffold37532 GLEAN promoter 6988 7987 1 - . ID=CGI_10002398; scaffold37532 GLEAN promoter 10110 11109 0.93635 + . ID=CGI_10002399; scaffold37532 GLEAN mRNA 11110 11917 0.93635 + . ID=CGI_10002399; scaffold37532 WUBlastX DNA_hAT-Blackja 12058 12264 58 + . . scaffold37532 WUBlastX DNA_hAT-Blackja 12097 12306 67 + . . scaffold37532 WUBlastX DNA_PiggyBac 13261 13410 32 + . . scaffold37532 WUBlastX DNA_PiggyBac 13418 13627 79 + . . scaffold37532 GLEAN promoter 13973 14972 0.818131 + . ID=CGI_10002400; scaffold37532 TRF Tandem_Repeat 14483 14521 78 + . . scaffold37532 GLEAN mRNA 14973 16805 0.818131 + . ID=CGI_10002400; scaffold37532 WUBlastX DNA_TcMar-Tc2 17062 17226 57 + . . scaffold37532 WUBlastX DNA_TcMar-Tc2 17140 17223 70 + . . scaffold37532 WUBlastX DNA_TcMar-Tc2 17207 17632 123 + . . scaffold37532 WUBlastX DNA_TcMar-Tc2 17279 17635 211 + . . scaffold37532 TRF Tandem_Repeat 22166 22219 108 + . . scaffold37532 GLEAN promoter 23867 24866 0.82218 + . ID=CGI_10002401; scaffold37532 GLEAN mRNA 24867 43092 0.82218 + . ID=CGI_10002401; scaffold37532 WUBlastX LTR_Gypsy 31671 32123 77 - . . scaffold37532 WUBlastX LTR_Gypsy 31746 32144 133 - . . scaffold37532 WUBlastX LTR_Gypsy 31830 32144 192 - . . scaffold37532 WUBlastX LTR_Gypsy 32129 33166 94 - . . scaffold37532 WUBlastX LTR_Gypsy 32165 32374 126 - . . scaffold37532 WUBlastX LTR_Gypsy 32395 32598 150 - . . scaffold37532 WUBlastX LTR_Gypsy 32395 32640 128 - . . scaffold37532 WUBlastX LTR_Gypsy 32842 33687 79 - . . scaffold37532 WUBlastX LTR_Gypsy 33073 33516 92 - . . scaffold37532 WUBlastX LTR_Gypsy 41147 41917 142 + . . scaffold37532 WUBlastX LTR_Gypsy 41150 41680 336 + . . scaffold37532 WUBlastX LTR_Gypsy 41497 42003 36 + . . scaffold37532 WUBlastX LTR_Gypsy 41893 42111 21 + . . scaffold37532 WUBlastX DNA_TcMar-Marin 42912 43196 52 - . . scaffold37532 WUBlastX LINE_L2 44071 44307 66 - . . scaffold37532 WUBlastX LINE_L2 44119 44364 68 - . . scaffold37532 WUBlastX LINE_L2 44122 44307 86 - . . scaffold37540 WUBlastX LINE_Proto2 1 465 40 - . . scaffold37540 TRF Tandem_Repeat 1808 2039 177 + . . scaffold37540 TRF Tandem_Repeat 3066 3092 54 + . . scaffold37540 GLEAN mRNA 3389 4546 1 - . ID=CGI_10002404; scaffold37540 GLEAN promoter 4547 5546 1 - . ID=CGI_10002404; scaffold37540 GLEAN mRNA 26415 29266 0.615405 - . ID=CGI_10002405; scaffold37540 GLEAN promoter 29267 30266 0.615405 - . ID=CGI_10002405; scaffold37540 GLEAN mRNA 29440 30356 0.615405 - . ID=CGI_10002406; scaffold37540 GLEAN promoter 30357 31356 0.615405 - . ID=CGI_10002406; scaffold37540 GLEAN mRNA 33950 40566 0.794507 - . ID=CGI_10002407; scaffold37540 GLEAN promoter 40567 41566 0.794507 - . ID=CGI_10002407; scaffold37540 TRF Tandem_Repeat 42395 42604 314 + . . scaffold37540 TRF Tandem_Repeat 42397 42614 249 + . . scaffold37540 TRF Tandem_Repeat 43285 43490 158 + . . scaffold37548 GLEAN promoter 6777 7776 0.990448 + . ID=CGI_10002402; scaffold37548 GLEAN mRNA 7777 17521 0.990448 + . ID=CGI_10002402; scaffold37554 WUBlastX LINE_RTE-X 364 474 25 + . . scaffold37554 WUBlastX LINE_RTE-X 397 474 32 + . . scaffold37554 TRF Tandem_Repeat 2191 2254 128 + . . scaffold37554 TRF Tandem_Repeat 3205 3369 178 + . . scaffold37554 WUBlastX LINE_RTE-X 3377 3490 61 - . . scaffold37554 WUBlastX LINE_RTE-X 3505 3714 49 - . . scaffold37554 TRF Tandem_Repeat 10727 10803 145 + . . scaffold37554 GLEAN promoter 24245 25244 0.998467 + . ID=CGI_10002408; scaffold37554 GLEAN mRNA 25245 27801 0.998467 + . ID=CGI_10002408; scaffold37554 TRF Tandem_Repeat 29200 29241 57 + . . scaffold37558 TRF Tandem_Repeat 265 474 111 + . . scaffold37558 TRF Tandem_Repeat 318 504 211 + . . scaffold37558 TRF Tandem_Repeat 969 1059 103 + . . scaffold37558 TRF Tandem_Repeat 3135 3166 55 + . . scaffold37558 WUBlastX LTR_DIRS 3809 4669 522 + . . scaffold37558 GLEAN promoter 4319 5318 0.499838 + . ID=CGI_10002409; scaffold37558 GLEAN mRNA 5319 20987 0.499838 + . ID=CGI_10002409; scaffold37558 TRF Tandem_Repeat 5720 5757 67 + . . scaffold37558 TRF Tandem_Repeat 6681 6706 52 + . . scaffold37558 GLEAN mRNA 8014 9295 0.781998 - . ID=CGI_10002410; scaffold37558 GLEAN promoter 9296 10295 0.781998 - . ID=CGI_10002410; scaffold37558 WUBlastX LTR_Gypsy 9352 9825 64 - . . scaffold37558 TRF Tandem_Repeat 10415 10465 88 + . . scaffold37558 TRF Tandem_Repeat 10641 10681 73 + . . scaffold37558 TRF Tandem_Repeat 21175 21561 630 + . . scaffold37558 TRF Tandem_Repeat 21175 21608 468 + . . scaffold37558 TRF Tandem_Repeat 35459 35568 139 + . . scaffold37558 TRF Tandem_Repeat 35474 35628 141 + . . scaffold37576 GLEAN mRNA 1605 6108 1 - . ID=CGI_10002419; scaffold37576 GLEAN promoter 5469 6468 1 + . ID=CGI_10002420; scaffold37576 GLEAN promoter 6109 7108 1 - . ID=CGI_10002419; scaffold37576 GLEAN mRNA 6469 13404 1 + . ID=CGI_10002420; scaffold37576 GLEAN promoter 13650 14649 0.57045 + . ID=CGI_10002421; scaffold37576 GLEAN mRNA 14650 25051 0.57045 + . ID=CGI_10002421; scaffold37576 GLEAN promoter 24054 25053 0.99615 + . ID=CGI_10002422; scaffold37576 GLEAN mRNA 25054 27015 0.99615 + . ID=CGI_10002422; scaffold37584 GLEAN promoter 32748 33747 0.668308 + . ID=CGI_10002411; scaffold37584 GLEAN mRNA 33748 45615 0.668308 + . ID=CGI_10002411; scaffold376 GLEAN promoter 1 95 0.999998 + . ID=CGI_10019487; scaffold376 GLEAN promoter 1 474 1 + . ID=CGI_10019489; scaffold376 GLEAN mRNA 96 457 0.999998 + . ID=CGI_10019487; scaffold376 GLEAN mRNA 369 623 1 - . ID=CGI_10019488; scaffold376 GLEAN mRNA 475 6625 1 + . ID=CGI_10019489; scaffold376 GLEAN promoter 624 1623 1 - . ID=CGI_10019488; scaffold376 TRF Tandem_Repeat 8786 8825 80 + . . scaffold376 GLEAN promoter 9529 10528 1 + . ID=CGI_10019490; scaffold376 GLEAN mRNA 10529 11178 1 + . ID=CGI_10019490; scaffold376 GLEAN promoter 12878 13877 0.495296 + . ID=CGI_10019491; scaffold376 GLEAN mRNA 13878 62236 0.495296 + . ID=CGI_10019491; scaffold376 TRF Tandem_Repeat 31117 31171 101 + . . scaffold376 TRF Tandem_Repeat 31220 31266 85 + . . scaffold376 TRF Tandem_Repeat 35535 35575 75 + . . scaffold376 TRF Tandem_Repeat 36958 36992 70 + . . scaffold376 TRF Tandem_Repeat 46617 46655 78 + . . scaffold376 TRF Tandem_Repeat 50720 50779 104 + . . scaffold376 TRF Tandem_Repeat 60627 60665 69 + . . scaffold376 TRF Tandem_Repeat 62449 62480 64 + . . scaffold376 TRF Tandem_Repeat 62592 63354 1070 + . . scaffold376 TRF Tandem_Repeat 66778 66806 58 + . . scaffold376 TRF Tandem_Repeat 67412 67526 94 + . . scaffold376 GLEAN mRNA 70005 87949 0.864748 - . ID=CGI_10019492; scaffold376 TRF Tandem_Repeat 74551 74663 118 + . . scaffold376 TRF Tandem_Repeat 74601 74663 54 + . . scaffold376 GLEAN promoter 87950 88949 0.864748 - . ID=CGI_10019492; scaffold376 GLEAN mRNA 93978 110826 0.870785 - . ID=CGI_10019493; scaffold376 TRF Tandem_Repeat 100700 100740 55 + . . scaffold376 TRF Tandem_Repeat 103936 104729 1156 + . . scaffold376 GLEAN promoter 110827 111826 0.870785 - . ID=CGI_10019493; scaffold376 GLEAN mRNA 120763 131323 0.857171 - . ID=CGI_10019494; scaffold376 GLEAN promoter 131324 132323 0.857171 - . ID=CGI_10019494; scaffold376 TRF Tandem_Repeat 131882 132174 144 + . . scaffold376 TRF Tandem_Repeat 142516 142585 133 + . . scaffold376 TRF Tandem_Repeat 163264 163421 118 + . . scaffold376 TRF Tandem_Repeat 167499 167542 88 + . . scaffold376 GLEAN mRNA 167965 195676 0.758754 - . ID=CGI_10019495; scaffold376 GLEAN promoter 195677 196676 0.758754 - . ID=CGI_10019495; scaffold376 GLEAN mRNA 203573 208074 0.418509 - . ID=CGI_10019496; scaffold376 GLEAN promoter 208075 209074 0.418509 - . ID=CGI_10019496; scaffold376 GLEAN mRNA 208084 222328 0.999676 - . ID=CGI_10019497; scaffold376 TRF Tandem_Repeat 218046 218094 98 + . . scaffold376 TRF Tandem_Repeat 220640 220677 76 + . . scaffold376 GLEAN promoter 222329 223328 0.999676 - . ID=CGI_10019497; scaffold376 TRF Tandem_Repeat 226349 226416 102 + . . scaffold376 TRF Tandem_Repeat 241114 241142 58 + . . scaffold376 GLEAN promoter 263545 264544 0.618241 + . ID=CGI_10019498; scaffold376 GLEAN mRNA 264545 264802 0.618241 + . ID=CGI_10019498; scaffold376 TRF Tandem_Repeat 269713 269761 89 + . . scaffold376 TRF Tandem_Repeat 279052 279078 54 + . . scaffold376 TRF Tandem_Repeat 279861 279907 94 + . . scaffold376 GLEAN promoter 281350 282349 0.733495 + . ID=CGI_10019499; scaffold376 GLEAN promoter 281715 282714 0.999269 + . ID=CGI_10019500; scaffold376 GLEAN mRNA 282350 282712 0.733495 + . ID=CGI_10019499; scaffold376 GLEAN mRNA 282715 282900 0.999269 + . ID=CGI_10019500; scaffold376 GLEAN promoter 283244 284243 0.999372 + . ID=CGI_10019501; scaffold376 GLEAN promoter 283609 284608 0.999934 + . ID=CGI_10019502; scaffold376 TRF Tandem_Repeat 283699 283731 50 + . . scaffold376 GLEAN mRNA 284244 284606 0.999372 + . ID=CGI_10019501; scaffold376 GLEAN mRNA 284609 284794 0.999934 + . ID=CGI_10019502; scaffold376 GLEAN promoter 289135 290134 0.59015 + . ID=CGI_10019503; scaffold376 TRF Tandem_Repeat 289322 290010 837 + . . scaffold376 GLEAN mRNA 290135 290677 0.59015 + . ID=CGI_10019503; scaffold376 GLEAN mRNA 293492 293698 1 - . ID=CGI_10019504; scaffold376 GLEAN promoter 293699 294698 1 - . ID=CGI_10019504; scaffold376 TRF Tandem_Repeat 294790 295761 1391 + . . scaffold376 WUBlastX LTR_Gypsy 296065 296391 53 - . . scaffold376 WUBlastX LTR_Gypsy 296408 296746 44 - . . scaffold376 WUBlastX LTR_Gypsy-Cigr 296576 296746 54 - . . scaffold376 WUBlastX LTR_Gypsy 296758 297036 22 - . . scaffold376 WUBlastX LTR_Gypsy-Cigr 296818 297096 59 - . . scaffold376 TRF Tandem_Repeat 298276 298386 204 + . . scaffold376 TRF Tandem_Repeat 298550 298586 65 + . . scaffold376 TRF Tandem_Repeat 299162 299223 115 + . . scaffold376 GLEAN promoter 303370 304369 0.982307 + . ID=CGI_10019505; scaffold376 GLEAN mRNA 304370 320183 0.982307 + . ID=CGI_10019505; scaffold376 TRF Tandem_Repeat 305025 305293 160 + . . scaffold376 TRF Tandem_Repeat 305026 305293 208 + . . scaffold376 TRF Tandem_Repeat 309230 309306 145 + . . scaffold376 TRF Tandem_Repeat 311609 311660 97 + . . scaffold376 TRF Tandem_Repeat 311664 311702 78 + . . scaffold376 TRF Tandem_Repeat 315254 315305 104 + . . scaffold376 TRF Tandem_Repeat 322262 322306 90 + . . scaffold376 TRF Tandem_Repeat 324529 324567 78 + . . scaffold376 TRF Tandem_Repeat 326099 326137 51 + . . scaffold376 TRF Tandem_Repeat 328740 328788 98 + . . scaffold376 WUBlastX DNA_TcMar-Tc1 329712 330251 142 + . . scaffold376 WUBlastX DNA_TcMar-Tc1 330199 330735 193 + . . scaffold376 WUBlastX DNA_TcMar-Tc1 330289 330744 213 + . . scaffold376 GLEAN mRNA 331949 334582 1 - . ID=CGI_10019506; scaffold376 GLEAN promoter 334583 335582 1 - . ID=CGI_10019506; scaffold376 TRF Tandem_Repeat 334653 336247 2677 + . . scaffold376 GLEAN mRNA 336489 349100 0.976666 - . ID=CGI_10019507; scaffold376 GLEAN promoter 349101 350100 0.976666 - . ID=CGI_10019507; scaffold376 GLEAN mRNA 349184 357222 0.996974 - . ID=CGI_10019508; scaffold376 TRF Tandem_Repeat 352216 352378 69 + . . scaffold376 TRF Tandem_Repeat 352216 352297 56 + . . scaffold376 TRF Tandem_Repeat 352388 352530 150 + . . scaffold376 GLEAN promoter 357223 358222 0.996974 - . ID=CGI_10019508; scaffold376 GLEAN mRNA 358784 363709 0.460251 - . ID=CGI_10019509; scaffold376 GLEAN promoter 363710 364709 0.460251 - . ID=CGI_10019509; scaffold376 TRF Tandem_Repeat 364723 364767 81 + . . scaffold376 TRF Tandem_Repeat 365519 365572 108 + . . scaffold376 TRF Tandem_Repeat 367249 367475 393 + . . scaffold376 GLEAN promoter 372930 373929 1 + . ID=CGI_10019510; scaffold376 GLEAN mRNA 373930 382859 1 + . ID=CGI_10019510; scaffold376 TRF Tandem_Repeat 376717 376781 121 + . . scaffold376 TRF Tandem_Repeat 380106 380148 59 + . . scaffold376 TRF Tandem_Repeat 382551 382617 134 + . . scaffold376 GLEAN promoter 385153 386152 0.499771 + . ID=CGI_10019511; scaffold376 GLEAN mRNA 386153 394820 0.499771 + . ID=CGI_10019511; scaffold376 TRF Tandem_Repeat 390343 390430 176 + . . scaffold376 TRF Tandem_Repeat 391564 391651 97 + . . scaffold376 TRF Tandem_Repeat 391564 391651 51 + . . scaffold376 TRF Tandem_Repeat 391564 391651 85 + . . scaffold376 TRF Tandem_Repeat 391578 391651 57 + . . scaffold376 TRF Tandem_Repeat 392785 392851 91 + . . scaffold376 TRF Tandem_Repeat 394499 394547 89 + . . scaffold376 WUBlastX DNA_hAT-Ac 403681 403794 29 + . . scaffold376 WUBlastX DNA_hAT-Ac 403790 403933 85 + . . scaffold376 WUBlastX DNA_hAT-Ac 403793 403966 72 + . . scaffold376 WUBlastX DNA_hAT-Ac 403793 404005 56 + . . scaffold376 TRF Tandem_Repeat 406246 406331 106 + . . scaffold376 WUBlastX LTR_Gypsy 415273 415323 21 + . . scaffold376 WUBlastX LTR_Gypsy 415948 416670 160 + . . scaffold376 WUBlastX LTR_Gypsy 416191 416901 470 + . . scaffold376 WUBlastX LTR_Gypsy 416891 417298 192 + . . scaffold376 WUBlastX LTR_Gypsy 417288 417782 185 + . . scaffold376 WUBlastX LTR_Gypsy 417664 418236 337 + . . scaffold376 WUBlastX LTR_Gypsy 417673 418422 229 + . . scaffold376 WUBlastX LTR_Gypsy 418239 418709 114 + . . scaffold376 WUBlastX LTR_DIRS 420531 420908 67 + . . scaffold376 WUBlastX LTR_DIRS 420902 421255 95 + . . scaffold376 WUBlastX LTR_DIRS 420944 421336 84 + . . scaffold376 WUBlastX LTR_DIRS 421329 421853 144 + . . scaffold376 WUBlastX LTR_DIRS 421452 421856 146 + . . scaffold376 WUBlastX LTR_DIRS 421856 422836 140 + . . scaffold376 WUBlastX LTR_DIRS 422122 422493 233 + . . scaffold376 WUBlastX LTR_DIRS 422456 422857 202 + . . scaffold376 WUBlastX LTR_DIRS 422865 423848 516 + . . scaffold376 WUBlastX DNA_Sola 432988 433422 205 - . . scaffold376 WUBlastX DNA_Sola 433410 433967 169 - . . scaffold376 WUBlastX LINE_RTE-X 438917 439087 41 + . . scaffold376 WUBlastX LINE_RTE-X 439117 439731 96 + . . scaffold376 WUBlastX LINE_RTE-X 439141 439659 154 + . . scaffold376 WUBlastX LINE_RTE-X 439375 439824 85 + . . scaffold376 WUBlastX LINE_I 440778 440891 26 + . . scaffold376 WUBlastX LINE_RTE-BovB 440808 440891 27 + . . scaffold376 WUBlastX LINE_CR1 440835 440891 32 + . . scaffold376 WUBlastX LINE_RTE-X 440923 441660 87 + . . scaffold376 WUBlastX LINE_RTE-X 441424 441627 128 + . . scaffold376 WUBlastX LINE_RTE-X 441660 441878 139 + . . scaffold376 WUBlastX LINE_RTE-X 441660 441932 139 + . . scaffold376 WUBlastX LINE_RTE-X 441872 442087 85 + . . scaffold376 WUBlastX LINE_RTE-X 442069 442731 108 + . . scaffold376 WUBlastX LINE_RTE-X 442069 442620 145 + . . scaffold376 WUBlastX LINE_RTE-X 442833 443102 46 + . . scaffold376 TRF Tandem_Repeat 446468 446518 52 + . . scaffold376 TRF Tandem_Repeat 446901 446954 99 + . . scaffold376 GLEAN mRNA 451389 451855 0.99018 - . ID=CGI_10019512; scaffold376 GLEAN promoter 451856 452855 0.99018 - . ID=CGI_10019512; scaffold376 GLEAN promoter 456644 457643 1 + . ID=CGI_10019513; scaffold376 GLEAN mRNA 457644 466001 1 + . ID=CGI_10019513; scaffold376 TRF Tandem_Repeat 463960 464165 369 + . . scaffold376 TRF Tandem_Repeat 469753 470620 1371 + . . scaffold376 GLEAN mRNA 470787 482175 1 - . ID=CGI_10019514; scaffold376 GLEAN promoter 482176 483175 1 - . ID=CGI_10019514; scaffold376 GLEAN mRNA 482896 487646 1 - . ID=CGI_10019515; scaffold376 TRF Tandem_Repeat 484068 484184 110 + . . scaffold376 TRF Tandem_Repeat 484470 484641 148 + . . scaffold376 GLEAN promoter 487647 488646 1 - . ID=CGI_10019515; scaffold376 TRF Tandem_Repeat 487754 488266 709 + . . scaffold376 TRF Tandem_Repeat 487758 488266 731 + . . scaffold376 TRF Tandem_Repeat 497981 498017 53 + . . scaffold376 TRF Tandem_Repeat 498274 498311 76 + . . scaffold376 TRF Tandem_Repeat 501495 501606 179 + . . scaffold376 TRF Tandem_Repeat 503931 504433 434 + . . scaffold376 TRF Tandem_Repeat 504611 505367 1289 + . . scaffold376 TRF Tandem_Repeat 505182 505354 94 + . . scaffold376 TRF Tandem_Repeat 513059 514344 1811 + . . scaffold376 TRF Tandem_Repeat 514375 514418 61 + . . scaffold376 GLEAN promoter 514859 515858 0.998484 + . ID=CGI_10019516; scaffold376 GLEAN mRNA 515859 517124 0.998484 + . ID=CGI_10019516; scaffold376 GLEAN mRNA 517032 535228 0.52974 - . ID=CGI_10019517; scaffold376 GLEAN promoter 522642 523641 0.999661 + . ID=CGI_10019518; scaffold376 GLEAN mRNA 523642 524784 0.999661 + . ID=CGI_10019518; scaffold376 TRF Tandem_Repeat 528614 528752 154 + . . scaffold376 GLEAN promoter 535229 536228 0.52974 - . ID=CGI_10019517; scaffold376 TRF Tandem_Repeat 536083 536133 50 + . . scaffold376 TRF Tandem_Repeat 536090 536133 54 + . . scaffold376 TRF Tandem_Repeat 537654 537896 378 + . . scaffold376 WUBlastX LINE_RTE-X 539638 540171 139 + . . scaffold376 TRF Tandem_Repeat 542806 542877 137 + . . scaffold376 GLEAN mRNA 545139 552893 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 546769 546817 98 + . . scaffold376 TRF Tandem_Repeat 548871 549096 416 + . . scaffold376 TRF Tandem_Repeat 549094 549614 943 + . . scaffold376 TRF Tandem_Repeat 550732 551110 200 + . . scaffold376 TRF Tandem_Repeat 550839 551109 156 + . . scaffold376 TRF Tandem_Repeat 551018 551292 199 + . . scaffold376 TRF Tandem_Repeat 551018 551292 271 + . . scaffold376 GLEAN promoter 552894 553893 0.999676 - . ID=CGI_10019519; scaffold376 TRF Tandem_Repeat 553766 553816 102 + . . scaffold376 TRF Tandem_Repeat 560186 560265 160 + . . scaffold376 GLEAN promoter 560970 561969 0.991774 + . ID=CGI_10019520; scaffold376 GLEAN mRNA 561970 569351 0.991774 + . ID=CGI_10019520; scaffold376 TRF Tandem_Repeat 577035 577061 54 + . . scaffold376 GLEAN mRNA 580357 580584 0.77661 - . ID=CGI_10019521; scaffold376 GLEAN promoter 580585 581584 0.77661 - . ID=CGI_10019521; scaffold376 WUBlastX LTR_Ngaro 580991 581968 492 - . . scaffold376 WUBlastX LTR_Ngaro 581848 583509 1117 - . . scaffold376 GLEAN promoter 585460 586459 0.999656 + . ID=CGI_10019522; scaffold376 GLEAN mRNA 586460 598780 0.999656 + . ID=CGI_10019522; scaffold376 TRF Tandem_Repeat 599845 599875 62 + . . scaffold376 GLEAN mRNA 599913 600656 0.6495 - . ID=CGI_10019523; scaffold376 GLEAN promoter 600657 601656 0.6495 - . ID=CGI_10019523; scaffold37622 TRF Tandem_Repeat 10508 10562 60 + . . scaffold37622 GLEAN mRNA 16284 44703 0.980135 - . ID=CGI_10002429; scaffold37622 WUBlastX LINE_L2 26424 26546 59 + . . scaffold37622 TRF Tandem_Repeat 36323 36389 89 + . . scaffold37622 TRF Tandem_Repeat 36902 36935 68 + . . scaffold37622 TRF Tandem_Repeat 36933 36965 66 + . . scaffold37622 TRF Tandem_Repeat 37153 37199 94 + . . scaffold37622 TRF Tandem_Repeat 39588 39654 89 + . . scaffold37622 GLEAN promoter 44704 45703 0.980135 - . ID=CGI_10002429; scaffold37622 TRF Tandem_Repeat 46038 46075 51 + . . scaffold37662 WUBlastX DNA_Harbinger 16467 16763 66 - . . scaffold37662 WUBlastX DNA_Harbinger 16650 16754 91 - . . scaffold37662 WUBlastX DNA_hAT-Ac 17553 17801 37 - . . scaffold37662 WUBlastX DNA_hAT-Ac 18323 18430 28 - . . scaffold37662 WUBlastX DNA_hAT-Ac 18418 18519 23 - . . scaffold37662 TRF Tandem_Repeat 18597 18670 60 + . . scaffold37662 WUBlastX DNA_Sola 22317 22646 88 + . . scaffold37662 WUBlastX DNA_Sola 23343 23663 160 + . . scaffold37662 WUBlastX DNA_Sola 23696 23917 136 + . . scaffold37662 WUBlastX DNA_Sola 24745 25092 134 + . . scaffold37662 WUBlastX DNA_TcMar-Tigge 28565 28747 26 - . . scaffold37662 WUBlastX DNA_TcMar-Pogo 28613 28945 104 - . . scaffold37662 WUBlastX DNA_TcMar-Pogo 28901 29248 137 - . . scaffold37662 TRF Tandem_Repeat 32041 32106 64 + . . scaffold37662 TRF Tandem_Repeat 32042 32105 53 + . . scaffold37662 GLEAN mRNA 34115 44273 0.524598 - . ID=CGI_10002444; scaffold37662 TRF Tandem_Repeat 43404 43433 60 + . . scaffold37662 GLEAN promoter 44274 45273 0.524598 - . ID=CGI_10002444; scaffold37662 WUBlastX DNA_TcMar-Fot1 44709 44906 24 - . . scaffold37662 WUBlastX DNA_TcMar-Fot1 44839 45036 37 - . . scaffold37662 WUBlastX DNA_TcMar-Fot1 44902 45090 188 - . . scaffold37662 WUBlastX DNA_TcMar-Fot1 45089 45829 480 - . . scaffold37664 GLEAN promoter 1 385 1 + . ID=CGI_10002437; scaffold37664 TRF Tandem_Repeat 283 359 120 + . . scaffold37664 GLEAN mRNA 386 2665 1 + . ID=CGI_10002437; scaffold37664 GLEAN mRNA 6323 9899 0.999572 - . ID=CGI_10002438; scaffold37664 GLEAN promoter 9900 10899 0.999572 - . ID=CGI_10002438; scaffold37664 TRF Tandem_Repeat 11028 11068 82 + . . scaffold37664 GLEAN mRNA 14053 21743 0.991415 - . ID=CGI_10002439; scaffold37664 GLEAN promoter 21744 22743 0.991415 - . ID=CGI_10002439; scaffold37664 TRF Tandem_Repeat 22011 22047 74 + . . scaffold37664 TRF Tandem_Repeat 22335 22376 84 + . . scaffold37664 TRF Tandem_Repeat 23665 24039 457 + . . scaffold37664 TRF Tandem_Repeat 23665 24034 449 + . . scaffold37664 TRF Tandem_Repeat 24691 24801 143 + . . scaffold37664 GLEAN promoter 25553 26552 0.581431 + . ID=CGI_10002440; scaffold37664 GLEAN mRNA 26553 34965 0.581431 + . ID=CGI_10002440; scaffold37664 WUBlastX LINE_L2 29970 30701 40 + . . scaffold37664 WUBlastX LINE_CR1-L2 30090 30722 236 + . . scaffold37664 WUBlastX LINE_L2 30096 30839 182 + . . scaffold37664 WUBlastX LINE_L2 31736 31831 26 + . . scaffold37664 GLEAN promoter 34492 35491 0.998208 + . ID=CGI_10002441; scaffold37664 TRF Tandem_Repeat 35030 35107 84 + . . scaffold37664 TRF Tandem_Repeat 35038 35107 68 + . . scaffold37664 TRF Tandem_Repeat 35038 35107 68 + . . scaffold37664 GLEAN mRNA 35492 42312 0.998208 + . ID=CGI_10002441; scaffold37664 GLEAN mRNA 36924 37133 0.776794 - . ID=CGI_10002442; scaffold37664 GLEAN promoter 37134 38133 0.776794 - . ID=CGI_10002442; scaffold37664 WUBlastX DNA_IS4EU 45984 46541 234 + . . scaffold37668 TRF Tandem_Repeat 2758 2805 96 + . . scaffold37668 TRF Tandem_Repeat 8291 8430 104 + . . scaffold37668 TRF Tandem_Repeat 15048 15089 84 + . . scaffold37668 TRF Tandem_Repeat 16206 16245 80 + . . scaffold37668 WUBlastX DNA_IS4EU 21340 21816 94 + . . scaffold37668 WUBlastX DNA_IS4EU 21583 21813 119 + . . scaffold37668 WUBlastX DNA_IS4EU 22217 22687 34 - . . scaffold37668 TRF Tandem_Repeat 26386 26424 51 + . . scaffold37668 WUBlastX LINE_Penelope 27746 28003 49 + . . scaffold37668 WUBlastX LINE_Penelope 28004 28489 27 - . . scaffold37668 WUBlastX LINE_Penelope 28103 28669 142 - . . scaffold37668 TRF Tandem_Repeat 28726 28751 52 + . . scaffold37668 WUBlastX LTR_Ngaro 30060 30482 163 + . . scaffold37668 WUBlastX LTR_Ngaro 30069 30563 82 + . . scaffold37668 WUBlastX LTR_Ngaro 30596 31501 317 + . . scaffold37668 WUBlastX LTR_DIRS 36061 36576 60 + . . scaffold37668 WUBlastX LTR_ERV1 36700 36771 22 + . . scaffold37668 WUBlastX LTR_DIRS 36841 36894 22 + . . scaffold37668 WUBlastX LTR_DIRS 36876 37226 137 + . . scaffold37668 TRF Tandem_Repeat 37284 37500 142 + . . scaffold37668 TRF Tandem_Repeat 37284 37439 122 + . . scaffold37668 TRF Tandem_Repeat 37366 37525 130 + . . scaffold37668 WUBlastX LTR_DIRS 37687 38193 177 + . . scaffold37668 WUBlastX LTR_DIRS 38132 38626 279 + . . scaffold37668 WUBlastX LINE_L1-Tx1 39772 40125 55 - . . scaffold37668 WUBlastX LINE_L1-Tx1 39925 40191 67 - . . scaffold37668 GLEAN promoter 39969 40968 0.48053 + . ID=CGI_10002448; scaffold37668 GLEAN mRNA 40969 43429 0.48053 + . ID=CGI_10002448; scaffold37668 WUBlastX LTR_Ngaro 45080 45571 40 - . . scaffold37668 WUBlastX LTR_Ngaro 45203 45562 118 - . . scaffold37668 WUBlastX LTR_Ngaro 45535 46953 1166 - . . scaffold37672 GLEAN mRNA 4057 4236 0.695642 - . ID=CGI_10002461; scaffold37672 GLEAN promoter 4237 5236 0.695642 - . ID=CGI_10002461; scaffold37672 WUBlastX DNA_Crypton 4880 5458 61 - . . scaffold37672 WUBlastX LINE_L1-Tx1 13617 14708 116 + . . scaffold37672 WUBlastX LINE_L1-Tx1 13926 14684 150 + . . scaffold37672 WUBlastX LINE_L1-Tx1 15419 15595 21 + . . scaffold37672 WUBlastX LINE_L1-Tx1 31933 32382 37 - . . scaffold37672 WUBlastX LINE_L1-Tx1 31933 32313 62 - . . scaffold37672 GLEAN promoter 32173 33172 0.497004 + . ID=CGI_10002462; scaffold37672 GLEAN mRNA 33173 40566 0.497004 + . ID=CGI_10002462; scaffold37672 TRF Tandem_Repeat 34456 34503 96 + . . scaffold37672 TRF Tandem_Repeat 40679 40767 115 + . . scaffold37672 TRF Tandem_Repeat 40697 40774 61 + . . scaffold37678 GLEAN promoter 1485 2484 0.59015 + . ID=CGI_10002430; scaffold37678 GLEAN mRNA 2485 3033 0.59015 + . ID=CGI_10002430; scaffold37678 GLEAN mRNA 3054 19948 0.906607 - . ID=CGI_10002431; scaffold37678 TRF Tandem_Repeat 3518 3621 154 + . . scaffold37678 TRF Tandem_Repeat 3910 3939 51 + . . scaffold37678 TRF Tandem_Repeat 6655 6886 319 + . . scaffold37678 WUBlastX RC_Helitron 8393 13984 1930 - . . scaffold37678 WUBlastX DNA_Helitron 11840 14506 755 - . . scaffold37678 TRF Tandem_Repeat 18939 18978 52 + . . scaffold37678 GLEAN promoter 19949 20948 0.906607 - . ID=CGI_10002431; scaffold37678 TRF Tandem_Repeat 22240 22287 96 + . . scaffold37678 TRF Tandem_Repeat 22400 22474 69 + . . scaffold37678 TRF Tandem_Repeat 22404 22510 115 + . . scaffold37678 TRF Tandem_Repeat 22404 22514 123 + . . scaffold37678 TRF Tandem_Repeat 22424 22514 137 + . . scaffold37678 TRF Tandem_Repeat 22424 22514 137 + . . scaffold37678 TRF Tandem_Repeat 24025 24064 80 + . . scaffold37678 TRF Tandem_Repeat 24846 24914 138 + . . scaffold37678 TRF Tandem_Repeat 25033 25067 70 + . . scaffold37678 GLEAN promoter 25600 26599 1 + . ID=CGI_10002432; scaffold37678 GLEAN mRNA 26600 28654 1 + . ID=CGI_10002432; scaffold37678 TRF Tandem_Repeat 26844 26879 72 + . . scaffold37678 GLEAN mRNA 28513 33237 0.483181 - . ID=CGI_10002433; scaffold37678 GLEAN promoter 33238 34237 0.483181 - . ID=CGI_10002433; scaffold37678 GLEAN mRNA 34352 37890 1 - . ID=CGI_10002434; scaffold37678 TRF Tandem_Repeat 35140 35200 61 + . . scaffold37678 TRF Tandem_Repeat 36111 36154 52 + . . scaffold37678 GLEAN promoter 37891 38890 1 - . ID=CGI_10002434; scaffold37680 WUBlastX LINE_RTE-X 5 415 147 - . . scaffold37680 WUBlastX LINE_RTE-X 426 1259 87 - . . scaffold37680 WUBlastX LINE_RTE-X 459 1160 95 - . . scaffold37680 GLEAN promoter 1810 2809 0.393731 + . ID=CGI_10002454; scaffold37680 GLEAN mRNA 2810 3946 0.393731 + . ID=CGI_10002454; scaffold37680 GLEAN promoter 8868 9867 0.554935 + . ID=CGI_10002455; scaffold37680 WUBlastX LINE_RTE-X 9276 9710 52 - . . scaffold37680 WUBlastX LINE_RTE-X 9408 9680 75 - . . scaffold37680 GLEAN mRNA 9868 16114 0.554935 + . ID=CGI_10002455; scaffold37680 WUBlastX DNA_TcMar-Marin 18924 19028 35 + . . scaffold37680 WUBlastX DNA_TcMar-Marin 19020 19112 72 + . . scaffold37680 WUBlastX DNA_TcMar-Marin 19038 19181 54 + . . scaffold37680 TRF Tandem_Repeat 20597 20654 64 + . . scaffold37680 TRF Tandem_Repeat 20915 20964 100 + . . scaffold37680 WUBlastX DNA_Harbinger 21340 21573 180 - . . scaffold37680 WUBlastX DNA_Harbinger 21575 21958 145 - . . scaffold37680 TRF Tandem_Repeat 25897 25950 108 + . . scaffold37680 GLEAN promoter 26312 27311 0.588618 + . ID=CGI_10002456; scaffold37680 GLEAN mRNA 27312 29915 0.588618 + . ID=CGI_10002456; scaffold37680 GLEAN mRNA 37625 45156 1 - . ID=CGI_10002457; scaffold37680 TRF Tandem_Repeat 43236 43447 203 + . . scaffold37680 GLEAN promoter 45157 46156 1 - . ID=CGI_10002457; scaffold37690 GLEAN mRNA 848 11248 0.999676 - . ID=CGI_10002458; scaffold37690 GLEAN promoter 11016 12015 0.86357 + . ID=CGI_10002459; scaffold37690 GLEAN promoter 11249 12248 0.999676 - . ID=CGI_10002458; scaffold37690 GLEAN mRNA 12016 27627 0.86357 + . ID=CGI_10002459; scaffold37690 GLEAN promoter 26703 27702 0.984721 + . ID=CGI_10002460; scaffold37690 GLEAN mRNA 27703 28597 0.984721 + . ID=CGI_10002460; scaffold37698 WUBlastX LINE_L1-Tx1 40136 41896 326 - . . scaffold37698 WUBlastX LINE_L1-Tx1 41883 42389 211 - . . scaffold37698 WUBlastX LINE_L1 43380 44174 61 - . . scaffold37698 WUBlastX LINE_L2 43479 44138 97 - . . scaffold37698 WUBlastX LINE_CR1-L2 43512 43892 115 - . . scaffold37698 TRF Tandem_Repeat 44609 44661 88 + . . scaffold377 TRF Tandem_Repeat 971 1015 90 + . . scaffold377 TRF Tandem_Repeat 3003 3061 118 + . . scaffold377 WUBlastX DNA_Maverick 4904 5437 130 - . . scaffold377 WUBlastX DNA_Maverick 5368 5502 47 - . . scaffold377 WUBlastX DNA_Maverick 7141 7329 68 - . . scaffold377 WUBlastX DNA_Maverick 7292 7621 94 - . . scaffold377 WUBlastX DNA_Maverick 7292 7543 101 - . . scaffold377 WUBlastX DNA_Maverick 7292 7690 73 - . . scaffold377 WUBlastX DNA_Maverick 8817 8987 33 - . . scaffold377 WUBlastX DNA_Maverick 8877 9011 34 - . . scaffold377 WUBlastX DNA_Maverick 9004 9075 58 - . . scaffold377 WUBlastX DNA_Maverick 9068 9316 77 - . . scaffold377 WUBlastX DNA_Maverick 9068 9271 151 - . . scaffold377 WUBlastX DNA_Maverick 9392 9706 180 - . . scaffold377 WUBlastX DNA_Maverick 9621 10682 239 - . . scaffold377 WUBlastX DNA_Maverick 10675 10740 23 - . . scaffold377 WUBlastX DNA_Maverick 11374 12087 82 - . . scaffold377 WUBlastX DNA_Maverick 11404 11658 113 - . . scaffold377 TRF Tandem_Repeat 16140 16260 71 + . . scaffold377 GLEAN promoter 17649 18648 0.90895 + . ID=CGI_10019394; scaffold377 GLEAN mRNA 18649 19745 0.90895 + . ID=CGI_10019394; scaffold377 GLEAN promoter 19015 20014 0.988765 + . ID=CGI_10019395; scaffold377 GLEAN mRNA 20015 21428 0.988765 + . ID=CGI_10019395; scaffold377 TRF Tandem_Repeat 21600 22593 1040 + . . scaffold377 TRF Tandem_Repeat 32283 32322 73 + . . scaffold377 TRF Tandem_Repeat 35714 35983 131 + . . scaffold377 TRF Tandem_Repeat 35714 35951 177 + . . scaffold377 TRF Tandem_Repeat 35789 35937 189 + . . scaffold377 TRF Tandem_Repeat 35841 35915 59 + . . scaffold377 WUBlastX LINE_RTE-X 61708 63273 363 - . . scaffold377 WUBlastX LINE_RTE-X 61891 63216 381 - . . scaffold377 WUBlastX LINE_CR1 63290 63778 58 - . . scaffold377 WUBlastX LINE_CR1 63350 63682 61 - . . scaffold377 WUBlastX LINE_I-Nimb 63437 64015 38 - . . scaffold377 WUBlastX LINE_RTE-X 63934 64248 46 - . . scaffold377 WUBlastX LINE_Proto2 64015 64473 87 - . . scaffold377 WUBlastX LINE_L2 64027 64620 30 - . . scaffold377 GLEAN mRNA 64986 73153 0.999964 - . ID=CGI_10019396; scaffold377 GLEAN promoter 73154 74153 0.999964 - . ID=CGI_10019396; scaffold377 GLEAN mRNA 73850 98039 0.998342 - . ID=CGI_10019397; scaffold377 GLEAN promoter 98040 99039 0.998342 - . ID=CGI_10019397; scaffold377 GLEAN mRNA 102694 104931 0.999999 - . ID=CGI_10019398; scaffold377 GLEAN promoter 104932 105931 0.999999 - . ID=CGI_10019398; scaffold377 GLEAN mRNA 105183 109017 0.999351 - . ID=CGI_10019399; scaffold377 GLEAN promoter 109018 110017 0.999351 - . ID=CGI_10019399; scaffold377 GLEAN mRNA 110592 113129 0.999676 - . ID=CGI_10019400; scaffold377 GLEAN promoter 113130 114129 0.999676 - . ID=CGI_10019400; scaffold377 GLEAN promoter 116271 117270 0.593391 + . ID=CGI_10019401; scaffold377 GLEAN mRNA 117271 121952 0.593391 + . ID=CGI_10019401; scaffold377 TRF Tandem_Repeat 118739 118791 106 + . . scaffold377 GLEAN mRNA 126352 131581 0.999344 - . ID=CGI_10019402; scaffold377 TRF Tandem_Repeat 128123 128380 336 + . . scaffold377 GLEAN promoter 130798 131797 1 + . ID=CGI_10019403; scaffold377 GLEAN promoter 131582 132581 0.999344 - . ID=CGI_10019402; scaffold377 GLEAN mRNA 131798 138764 1 + . ID=CGI_10019403; scaffold377 GLEAN mRNA 140445 144953 0.80154 - . ID=CGI_10019404; scaffold377 TRF Tandem_Repeat 141854 142091 431 + . . scaffold377 TRF Tandem_Repeat 143580 143616 65 + . . scaffold377 WUBlastX LINE_RTE-X 143727 143897 30 + . . scaffold377 WUBlastX LINE_RTE-X 143820 143957 35 + . . scaffold377 WUBlastX LINE_L1-Tx1 144775 145173 24 + . . scaffold377 GLEAN promoter 144954 145953 0.80154 - . ID=CGI_10019404; scaffold377 TRF Tandem_Repeat 145183 145222 64 + . . scaffold377 GLEAN promoter 145512 146511 0.59015 + . ID=CGI_10019405; scaffold377 GLEAN mRNA 146512 146895 0.59015 + . ID=CGI_10019405; scaffold377 TRF Tandem_Repeat 147632 147773 123 + . . scaffold377 TRF Tandem_Repeat 148800 149004 392 + . . scaffold377 TRF Tandem_Repeat 149783 149835 106 + . . scaffold377 TRF Tandem_Repeat 151066 151113 96 + . . scaffold377 TRF Tandem_Repeat 151186 151317 218 + . . scaffold377 WUBlastX LINE_RTE-X 151884 152075 99 + . . scaffold377 TRF Tandem_Repeat 152811 152875 62 + . . scaffold377 TRF Tandem_Repeat 152813 152868 60 + . . scaffold377 GLEAN mRNA 166451 167839 0.999999 - . ID=CGI_10019406; scaffold377 GLEAN promoter 167840 168839 0.999999 - . ID=CGI_10019406; scaffold377 TRF Tandem_Repeat 173286 174321 783 + . . scaffold377 TRF Tandem_Repeat 173286 174258 732 + . . scaffold377 TRF Tandem_Repeat 175120 175156 56 + . . scaffold377 TRF Tandem_Repeat 177517 177579 126 + . . scaffold377 WUBlastX LINE_CR1 179230 179535 37 - . . scaffold377 WUBlastX LINE_CR1 179287 179535 65 - . . scaffold377 WUBlastX LINE_CR1 179544 179702 49 - . . scaffold377 WUBlastX LINE_CR1 179749 179820 37 - . . scaffold377 WUBlastX LINE_CR1 179749 179910 33 - . . scaffold377 WUBlastX LINE_CR1 179770 179850 37 - . . scaffold377 TRF Tandem_Repeat 180902 181727 1031 + . . scaffold377 TRF Tandem_Repeat 188448 188502 92 + . . scaffold377 TRF Tandem_Repeat 201129 201479 265 + . . scaffold377 TRF Tandem_Repeat 201139 201479 229 + . . scaffold377 TRF Tandem_Repeat 201567 201746 299 + . . scaffold377 TRF Tandem_Repeat 212910 213507 833 + . . scaffold377 TRF Tandem_Repeat 212910 213507 851 + . . scaffold377 TRF Tandem_Repeat 213314 213409 50 + . . scaffold377 TRF Tandem_Repeat 217787 218051 413 + . . scaffold377 TRF Tandem_Repeat 222398 222850 681 + . . scaffold377 TRF Tandem_Repeat 222398 222850 618 + . . scaffold377 TRF Tandem_Repeat 226311 226816 771 + . . scaffold377 GLEAN mRNA 236608 237681 0.59015 - . ID=CGI_10019407; scaffold377 GLEAN promoter 237682 238681 0.59015 - . ID=CGI_10019407; scaffold377 GLEAN promoter 238571 239570 0.795952 + . ID=CGI_10019408; scaffold377 GLEAN mRNA 239571 251261 0.795952 + . ID=CGI_10019408; scaffold377 TRF Tandem_Repeat 247890 248058 243 + . . scaffold377 TRF Tandem_Repeat 248189 248410 322 + . . scaffold377 TRF Tandem_Repeat 267087 268224 1656 + . . scaffold377 WUBlastX RC_Helitron 269908 270738 285 + . . scaffold377 WUBlastX DNA_Helitron 270088 271497 224 + . . scaffold377 WUBlastX RC_Helitron 271471 272925 441 + . . scaffold377 WUBlastX DNA_Helitron 272296 272991 442 + . . scaffold377 WUBlastX DNA_Helitron 272470 274044 1284 + . . scaffold377 WUBlastX RC_Helitron 272770 275883 2191 + . . scaffold377 WUBlastX DNA_Helitron 275877 277040 594 + . . scaffold377 WUBlastX DNA_Helitron 277040 277450 147 + . . scaffold377 GLEAN mRNA 289602 292695 0.967643 - . ID=CGI_10019409; scaffold377 GLEAN promoter 292696 293695 0.967643 - . ID=CGI_10019409; scaffold377 TRF Tandem_Repeat 294695 294728 50 + . . scaffold377 TRF Tandem_Repeat 299485 299533 98 + . . scaffold377 TRF Tandem_Repeat 300459 300531 139 + . . scaffold377 WUBlastX DNA_Crypton 307122 307502 96 + . . scaffold377 TRF Tandem_Repeat 307905 307954 75 + . . scaffold377 WUBlastX DNA_Crypton 308176 308652 90 + . . scaffold377 GLEAN mRNA 311971 335723 0.547309 - . ID=CGI_10019410; scaffold377 TRF Tandem_Repeat 319127 319294 84 + . . scaffold377 TRF Tandem_Repeat 320085 320123 78 + . . scaffold377 GLEAN promoter 335724 336723 0.547309 - . ID=CGI_10019410; scaffold377 TRF Tandem_Repeat 337230 337285 112 + . . scaffold377 TRF Tandem_Repeat 344839 344890 104 + . . scaffold377 GLEAN promoter 350477 351476 0.966179 + . ID=CGI_10019411; scaffold377 GLEAN mRNA 351477 356930 0.966179 + . ID=CGI_10019411; scaffold377 GLEAN mRNA 360609 385596 0.996972 - . ID=CGI_10019412; scaffold377 TRF Tandem_Repeat 362782 362926 206 + . . scaffold377 TRF Tandem_Repeat 370105 370329 299 + . . scaffold377 GLEAN promoter 385597 386596 0.996972 - . ID=CGI_10019412; scaffold377 TRF Tandem_Repeat 387444 387487 70 + . . scaffold377 GLEAN mRNA 387794 391675 0.997296 - . ID=CGI_10019413; scaffold377 GLEAN promoter 391676 392675 0.997296 - . ID=CGI_10019413; scaffold377 GLEAN mRNA 392932 395813 1 - . ID=CGI_10019414; scaffold377 GLEAN promoter 394284 395283 0.480669 + . ID=CGI_10019415; scaffold377 GLEAN mRNA 395284 395586 0.480669 + . ID=CGI_10019415; scaffold377 GLEAN promoter 395814 396813 1 - . ID=CGI_10019414; scaffold377 TRF Tandem_Repeat 397324 397368 90 + . . scaffold377 GLEAN mRNA 397938 401183 0.990769 - . ID=CGI_10019416; scaffold377 GLEAN promoter 401184 402183 0.990769 - . ID=CGI_10019416; scaffold377 TRF Tandem_Repeat 411708 411742 52 + . . scaffold377 TRF Tandem_Repeat 412629 412703 150 + . . scaffold377 GLEAN mRNA 415635 423734 0.996768 - . ID=CGI_10019417; scaffold377 GLEAN promoter 423735 424734 0.996768 - . ID=CGI_10019417; scaffold377 TRF Tandem_Repeat 434322 434359 76 + . . scaffold377 TRF Tandem_Repeat 460823 461042 197 + . . scaffold377 TRF Tandem_Repeat 461875 461981 117 + . . scaffold377 TRF Tandem_Repeat 471074 471107 52 + . . scaffold377 TRF Tandem_Repeat 471993 472034 84 + . . scaffold377 GLEAN promoter 473331 474330 0.995285 + . ID=CGI_10019418; scaffold377 GLEAN mRNA 474331 477407 0.995285 + . ID=CGI_10019418; scaffold377 TRF Tandem_Repeat 477544 477590 85 + . . scaffold377 GLEAN promoter 485091 486090 0.981314 + . ID=CGI_10019419; scaffold377 GLEAN mRNA 486091 495667 0.981314 + . ID=CGI_10019419; scaffold377 GLEAN mRNA 524976 531343 0.999084 - . ID=CGI_10019420; scaffold377 TRF Tandem_Repeat 526004 526065 124 + . . scaffold377 GLEAN promoter 531344 532343 0.999084 - . ID=CGI_10019420; scaffold377 WUBlastX LINE_CR1-L2 539476 539889 110 - . . scaffold377 WUBlastX LINE_CR1-L2 539539 539889 137 - . . scaffold377 WUBlastX DNA_TcMar-Tc1 550049 550522 87 + . . scaffold377 WUBlastX DNA_TcMar-Tc1 550235 550540 115 + . . scaffold377 WUBlastX DNA_TcMar-Tc1 550570 550875 147 + . . scaffold377 TRF Tandem_Repeat 559518 559571 99 + . . scaffold377 TRF Tandem_Repeat 562067 562122 71 + . . scaffold377 TRF Tandem_Repeat 562071 562125 65 + . . scaffold377 WUBlastX LTR_Ngaro 586934 587095 69 - . . scaffold377 WUBlastX LTR_Ngaro 586940 587167 49 - . . scaffold377 TRF Tandem_Repeat 587870 587903 52 + . . scaffold377 WUBlastX LTR_Ngaro 590888 591808 368 - . . scaffold377 WUBlastX LTR_Ngaro 591778 593346 1056 - . . scaffold377 WUBlastX LTR_Ngaro 593327 594001 176 - . . scaffold377 TRF Tandem_Repeat 595035 595080 92 + . . scaffold37712 TRF Tandem_Repeat 13282 13524 106 + . . scaffold37712 WUBlastX DNA_Harbinger 14641 15120 302 - . . scaffold37712 GLEAN mRNA 15194 37462 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX DNA_Harbinger 15209 15376 105 - . . scaffold37712 WUBlastX DNA_Harbinger 15242 15430 92 - . . scaffold37712 WUBlastX DNA_Harbinger 15906 16007 48 - . . scaffold37712 TRF Tandem_Repeat 34749 34787 78 + . . scaffold37712 WUBlastX LTR_Gypsy 35907 36056 22 + . . scaffold37712 WUBlastX LTR_Gypsy 35974 36333 71 + . . scaffold37712 WUBlastX LTR_Gypsy 36136 36333 82 + . . scaffold37712 WUBlastX LTR_Gypsy 36324 36860 225 + . . scaffold37712 WUBlastX LTR_Gypsy 36429 36818 226 + . . scaffold37712 WUBlastX LTR_Gypsy 37291 37437 63 - . . scaffold37712 WUBlastX LTR_Gypsy 37291 37389 67 - . . scaffold37712 GLEAN promoter 37463 38462 0.403354 - . ID=CGI_10002463; scaffold37712 WUBlastX LINE_CR1-L2 42550 42666 49 + . . scaffold37712 WUBlastX LINE_L2 42972 43253 76 + . . scaffold37712 WUBlastX LINE_CR1-L2 43226 44305 325 + . . scaffold37712 WUBlastX LINE_L2 43508 44362 397 + . . scaffold37712 WUBlastX DNA_Kolobok-IS4 46032 46556 186 + . . scaffold37712 WUBlastX DNA_IS4EU 46032 46469 192 + . . scaffold37718 GLEAN mRNA 38802 44191 0.999227 - . ID=CGI_10002481; scaffold37718 GLEAN promoter 44192 45191 0.999227 - . ID=CGI_10002481; scaffold37722 TRF Tandem_Repeat 717 759 68 + . . scaffold37722 TRF Tandem_Repeat 7287 7311 50 + . . scaffold37722 TRF Tandem_Repeat 30252 30327 152 + . . scaffold37722 GLEAN mRNA 32046 32659 0.593244 - . ID=CGI_10002482; scaffold37722 GLEAN promoter 32660 33659 0.593244 - . ID=CGI_10002482; scaffold37722 WUBlastX DNA_Sola 33803 34252 95 - . . scaffold37722 WUBlastX DNA_Sola 33851 34789 60 - . . scaffold37722 WUBlastX DNA_Sola 34001 34339 104 - . . scaffold37722 WUBlastX DNA_Sola 34987 35208 27 - . . scaffold37722 GLEAN mRNA 36717 36950 0.776784 - . ID=CGI_10002483; scaffold37722 GLEAN promoter 36951 37950 0.776784 - . ID=CGI_10002483; scaffold37722 TRF Tandem_Repeat 37628 37659 55 + . . scaffold37722 TRF Tandem_Repeat 37766 37814 98 + . . scaffold37722 TRF Tandem_Repeat 42873 43027 238 + . . scaffold37722 WUBlastX LINE_L2 43375 43827 76 + . . scaffold37722 WUBlastX LINE_CR1-L2 43465 43827 170 + . . scaffold37722 WUBlastX LINE_L2 43558 43833 181 + . . scaffold37722 WUBlastX LINE_L2 43856 44605 30 + . . scaffold37722 WUBlastX LINE_L2 44006 45199 429 + . . scaffold37722 WUBlastX LINE_L2 44180 45415 122 + . . scaffold37724 GLEAN mRNA 6153 21744 1 - . ID=CGI_10002464; scaffold37724 GLEAN promoter 21745 22744 1 - . ID=CGI_10002464; scaffold37724 GLEAN promoter 25737 26736 0.733637 + . ID=CGI_10002465; scaffold37724 GLEAN mRNA 26737 45177 0.733637 + . ID=CGI_10002465; scaffold37730 TRF Tandem_Repeat 5475 5527 70 + . . scaffold37730 TRF Tandem_Repeat 17967 17995 58 + . . scaffold37730 TRF Tandem_Repeat 29755 29808 76 + . . scaffold37730 TRF Tandem_Repeat 29981 31141 1090 + . . scaffold37730 TRF Tandem_Repeat 39867 39916 100 + . . scaffold37730 WUBlastX LINE_L1-Tx1 43336 43380 22 - . . scaffold37730 WUBlastX LINE_L1-Tx1 43382 43744 152 - . . scaffold37730 WUBlastX LINE_L1 43382 43816 76 - . . scaffold37730 TRF Tandem_Repeat 43849 43911 83 + . . scaffold37730 TRF Tandem_Repeat 43850 43891 59 + . . scaffold37730 TRF Tandem_Repeat 43865 43914 64 + . . scaffold37732 WUBlastX LINE_L1-Tx1 5 2209 812 + . . scaffold37732 WUBlastX LINE_L1 2093 2230 32 + . . scaffold37732 WUBlastX LINE_L1 2282 3484 140 + . . scaffold37732 WUBlastX LINE_L1-Tx1 2516 4048 357 + . . scaffold37732 WUBlastX LINE_L1 3932 4069 32 + . . scaffold37732 GLEAN promoter 37633 38632 0.583234 + . ID=CGI_10002484; scaffold37732 GLEAN mRNA 38633 39343 0.583234 + . ID=CGI_10002484; scaffold37732 GLEAN promoter 40329 41328 0.987958 + . ID=CGI_10002485; scaffold37732 GLEAN mRNA 41329 46430 0.987958 + . ID=CGI_10002485; scaffold37732 TRF Tandem_Repeat 45610 45671 51 + . . scaffold37732 WUBlastX DNA_MuDR 46263 46586 95 - . . scaffold37732 WUBlastX DNA_MuDR 46413 46616 104 - . . scaffold37732 WUBlastX DNA_MuDR 46419 46703 70 - . . scaffold37738 GLEAN promoter 343 1342 1 + . ID=CGI_10002472; scaffold37738 GLEAN mRNA 1343 3232 1 + . ID=CGI_10002472; scaffold37738 GLEAN promoter 6788 7787 0.69447 + . ID=CGI_10002473; scaffold37738 GLEAN mRNA 7788 8429 0.69447 + . ID=CGI_10002473; scaffold37738 GLEAN mRNA 17578 18033 1 - . ID=CGI_10002474; scaffold37738 GLEAN promoter 18034 19033 1 - . ID=CGI_10002474; scaffold37738 GLEAN mRNA 18819 25624 1 - . ID=CGI_10002475; scaffold37738 GLEAN promoter 25625 26624 1 - . ID=CGI_10002475; scaffold37738 GLEAN promoter 30801 31800 0.995067 + . ID=CGI_10002476; scaffold37738 GLEAN mRNA 31801 42630 0.995067 + . ID=CGI_10002476; scaffold37740 GLEAN mRNA 280 12182 0.630216 - . ID=CGI_10002468; scaffold37740 WUBlastX DNA_NOF 8222 8803 112 - . . scaffold37740 WUBlastX DNA_NOF 8426 8923 136 - . . scaffold37740 WUBlastX DNA_MuDR 9773 9880 89 - . . scaffold37740 WUBlastX DNA_MuDR 10940 11311 25 - . . scaffold37740 WUBlastX DNA_NOF 11054 11374 251 - . . scaffold37740 WUBlastX DNA_NOF 12057 12155 34 - . . scaffold37740 GLEAN promoter 12183 13182 0.630216 - . ID=CGI_10002468; scaffold37740 GLEAN mRNA 12349 40683 0.409241 - . ID=CGI_10002469; scaffold37740 TRF Tandem_Repeat 15147 15227 153 + . . scaffold37740 TRF Tandem_Repeat 17177 17236 111 + . . scaffold37740 WUBlastX LINE_RTE-X 27089 27376 36 + . . scaffold37740 GLEAN promoter 40684 41683 0.409241 - . ID=CGI_10002469; scaffold37740 WUBlastX DNA_Harbinger 41528 41806 126 + . . scaffold37740 GLEAN mRNA 43284 43517 0.999918 - . ID=CGI_10002470; scaffold37740 GLEAN promoter 43518 44517 0.999918 - . ID=CGI_10002470; scaffold37740 WUBlastX DNA_Crypton 44056 44646 74 - . . scaffold37740 TRF Tandem_Repeat 45051 45127 109 + . . scaffold37740 GLEAN promoter 45278 46277 1 + . ID=CGI_10002471; scaffold37740 GLEAN mRNA 46278 46532 1 + . ID=CGI_10002471; scaffold37740 WUBlastX DNA_Harbinger 46713 46973 121 - . . scaffold37740 WUBlastX DNA_Harbinger 46979 47257 177 - . . scaffold37746 GLEAN mRNA 13378 16718 0.999991 - . ID=CGI_10002486; scaffold37746 GLEAN promoter 16719 17718 0.999991 - . ID=CGI_10002486; scaffold37746 GLEAN promoter 24031 25030 0.791376 + . ID=CGI_10002487; scaffold37746 GLEAN mRNA 25031 46785 0.791376 + . ID=CGI_10002487; scaffold37748 GLEAN promoter 2791 3790 0.654454 + . ID=CGI_10002491; scaffold37748 GLEAN mRNA 3791 7944 0.654454 + . ID=CGI_10002491; scaffold37756 GLEAN promoter 1801 2800 0.739068 + . ID=CGI_10002497; scaffold37756 GLEAN mRNA 2801 4312 0.739068 + . ID=CGI_10002497; scaffold37758 WUBlastX DNA_En-Spm 3575 4024 161 + . . scaffold37758 WUBlastX DNA_En-Spm 3683 4021 190 + . . scaffold37758 WUBlastX DNA_En-Spm 3948 5540 926 + . . scaffold37758 TRF Tandem_Repeat 8833 8890 55 + . . scaffold37758 TRF Tandem_Repeat 8834 8890 53 + . . scaffold37760 GLEAN promoter 10272 11271 0.979677 + . ID=CGI_10002466; scaffold37760 GLEAN mRNA 11272 38265 0.979677 + . ID=CGI_10002466; scaffold37760 WUBlastX LTR_Gypsy 11326 13692 767 + . . scaffold37760 WUBlastX LTR_Gypsy 11848 15222 2065 + . . scaffold37760 WUBlastX LTR_ERVK 15184 15237 23 + . . scaffold37760 TRF Tandem_Repeat 17488 17546 118 + . . scaffold37760 WUBlastX LTR_DIRS 20489 20872 244 - . . scaffold37760 WUBlastX LTR_DIRS 20495 20941 188 - . . scaffold37760 WUBlastX LTR_DIRS 20866 21078 92 - . . scaffold37760 WUBlastX LTR_DIRS 21155 21223 35 - . . scaffold37760 WUBlastX LTR_DIRS 21433 21609 43 - . . scaffold37760 TRF Tandem_Repeat 40899 40942 79 + . . scaffold37760 TRF Tandem_Repeat 44959 45012 83 + . . scaffold37760 TRF Tandem_Repeat 45185 46261 1752 + . . scaffold37772 GLEAN promoter 1374 2373 0.204065 + . ID=CGI_10002492; scaffold37772 GLEAN mRNA 2374 21400 0.204065 + . ID=CGI_10002492; scaffold37772 TRF Tandem_Repeat 10945 11154 144 + . . scaffold37772 TRF Tandem_Repeat 11019 11154 85 + . . scaffold37772 TRF Tandem_Repeat 11019 11171 109 + . . scaffold37772 TRF Tandem_Repeat 14563 14604 50 + . . scaffold37772 TRF Tandem_Repeat 19313 19495 249 + . . scaffold37772 GLEAN mRNA 22803 28480 0.678428 - . ID=CGI_10002493; scaffold37772 WUBlastX DNA_Maverick 22815 22928 45 - . . scaffold37772 WUBlastX DNA_Maverick 22880 23278 121 - . . scaffold37772 WUBlastX DNA_Maverick 22943 23248 175 - . . scaffold37772 GLEAN promoter 28481 29480 0.678428 - . ID=CGI_10002493; scaffold37772 TRF Tandem_Repeat 28553 28630 122 + . . scaffold37772 TRF Tandem_Repeat 28797 30485 2389 + . . scaffold37772 TRF Tandem_Repeat 35555 36369 1436 + . . scaffold37772 TRF Tandem_Repeat 45946 45993 69 + . . scaffold37788 WUBlastX LTR_Pao 544 690 74 + . . scaffold37788 WUBlastX LTR_Pao 550 744 54 + . . scaffold37788 TRF Tandem_Repeat 7949 7981 66 + . . scaffold37788 TRF Tandem_Repeat 9341 9381 82 + . . scaffold37788 WUBlastX LINE_RTE-X 42324 42422 30 - . . scaffold37788 WUBlastX LINE_RTE-X 42339 42413 56 - . . scaffold37788 WUBlastX LINE_RTE-X 42463 42732 68 - . . scaffold37788 WUBlastX LINE_RTE-X 42903 42983 41 - . . scaffold37790 GLEAN mRNA 1900 11693 1 - . ID=CGI_10002498; scaffold37790 TRF Tandem_Repeat 7841 7921 56 + . . scaffold37790 WUBlastX LTR_Ngaro 9808 10071 69 - . . scaffold37790 WUBlastX LTR_Ngaro 9886 10131 96 - . . scaffold37790 WUBlastX LTR_Ngaro 10173 10550 139 - . . scaffold37790 GLEAN promoter 11694 12693 1 - . ID=CGI_10002498; scaffold37790 WUBlastX DNA_TcMar-Tc1 12512 13195 205 + . . scaffold37790 WUBlastX DNA_TcMar-Tc1 13155 13403 83 + . . scaffold37790 WUBlastX DNA_TcMar-Tc1 13197 13304 85 + . . scaffold37790 WUBlastX DNA_TcMar-Tc1 13288 13425 49 + . . scaffold37790 TRF Tandem_Repeat 42046 42091 58 + . . scaffold37790 WUBlastX LINE_L1 43822 44016 36 - . . scaffold37790 WUBlastX LINE_L1 44001 44510 192 - . . scaffold37790 WUBlastX LINE_L1 44503 44631 26 - . . scaffold37790 WUBlastX LINE_L1 44551 44631 52 - . . scaffold37790 WUBlastX LINE_L1-Tx1 44554 44658 47 - . . scaffold37794 TRF Tandem_Repeat 1339 1385 58 + . . scaffold37794 TRF Tandem_Repeat 8698 9019 492 + . . scaffold37794 TRF Tandem_Repeat 11219 11282 65 + . . scaffold37794 TRF Tandem_Repeat 11220 11282 81 + . . scaffold37794 TRF Tandem_Repeat 11220 11286 107 + . . scaffold37794 GLEAN promoter 30174 31173 0.544852 + . ID=CGI_10002501; scaffold37794 GLEAN mRNA 31174 37793 0.544852 + . ID=CGI_10002501; scaffold37794 TRF Tandem_Repeat 33466 33512 94 + . . scaffold37794 WUBlastX DNA_hAT-Tip100 34665 34982 45 - . . scaffold37794 WUBlastX DNA_hAT-Tip100 34743 35135 83 - . . scaffold37794 WUBlastX DNA_hAT-Tip100 34767 34964 115 - . . scaffold37794 GLEAN mRNA 38382 40038 0.613862 - . ID=CGI_10002502; scaffold37794 GLEAN promoter 40039 41038 0.613862 - . ID=CGI_10002502; scaffold37794 GLEAN promoter 40762 41761 1 + . ID=CGI_10002503; scaffold37794 GLEAN mRNA 41762 42642 1 + . ID=CGI_10002503; scaffold378 GLEAN mRNA 708 20584 1 - . ID=CGI_10017629; scaffold378 TRF Tandem_Repeat 2186 2352 271 + . . scaffold378 TRF Tandem_Repeat 3403 3574 241 + . . scaffold378 TRF Tandem_Repeat 14431 14455 50 + . . scaffold378 GLEAN promoter 20585 21584 1 - . ID=CGI_10017629; scaffold378 GLEAN mRNA 20914 23742 0.984984 - . ID=CGI_10017630; scaffold378 GLEAN promoter 23743 24742 0.984984 - . ID=CGI_10017630; scaffold378 GLEAN promoter 24177 25176 0.994619 + . ID=CGI_10017631; scaffold378 GLEAN mRNA 25177 48186 0.994619 + . ID=CGI_10017631; scaffold378 TRF Tandem_Repeat 40013 40129 85 + . . scaffold378 GLEAN mRNA 49675 66984 1 - . ID=CGI_10017632; scaffold378 GLEAN promoter 66741 67740 0.531609 + . ID=CGI_10017633; scaffold378 GLEAN promoter 66985 67984 1 - . ID=CGI_10017632; scaffold378 GLEAN mRNA 67741 69456 0.531609 + . ID=CGI_10017633; scaffold378 GLEAN promoter 70968 71967 1 + . ID=CGI_10017634; scaffold378 GLEAN mRNA 71968 80378 1 + . ID=CGI_10017634; scaffold378 TRF Tandem_Repeat 78980 79157 193 + . . scaffold378 TRF Tandem_Repeat 78980 79177 111 + . . scaffold378 GLEAN mRNA 82704 90704 0.937424 - . ID=CGI_10017635; scaffold378 GLEAN promoter 90705 91704 0.937424 - . ID=CGI_10017635; scaffold378 TRF Tandem_Repeat 90883 90916 68 + . . scaffold378 TRF Tandem_Repeat 100206 100907 1087 + . . scaffold378 TRF Tandem_Repeat 110932 110966 70 + . . scaffold378 TRF Tandem_Repeat 118337 118369 50 + . . scaffold378 TRF Tandem_Repeat 132103 132131 58 + . . scaffold378 GLEAN promoter 133389 134388 0.999979 + . ID=CGI_10017636; scaffold378 GLEAN mRNA 134389 136097 0.999979 + . ID=CGI_10017636; scaffold378 TRF Tandem_Repeat 138139 138235 69 + . . scaffold378 TRF Tandem_Repeat 141318 141541 254 + . . scaffold378 TRF Tandem_Repeat 149009 149039 62 + . . scaffold378 TRF Tandem_Repeat 152995 153166 328 + . . scaffold378 TRF Tandem_Repeat 153002 153187 94 + . . scaffold378 TRF Tandem_Repeat 153522 153580 118 + . . scaffold378 TRF Tandem_Repeat 153578 153639 124 + . . scaffold378 TRF Tandem_Repeat 157276 157333 71 + . . scaffold378 TRF Tandem_Repeat 158661 158725 103 + . . scaffold378 TRF Tandem_Repeat 162552 162587 72 + . . scaffold378 TRF Tandem_Repeat 162585 162617 66 + . . scaffold378 GLEAN promoter 175533 176532 1 + . ID=CGI_10017637; scaffold378 GLEAN mRNA 176533 182856 1 + . ID=CGI_10017637; scaffold378 GLEAN mRNA 184266 188098 1 - . ID=CGI_10017638; scaffold378 TRF Tandem_Repeat 185084 185283 228 + . . scaffold378 TRF Tandem_Repeat 185086 186036 555 + . . scaffold378 TRF Tandem_Repeat 185479 186013 638 + . . scaffold378 TRF Tandem_Repeat 185479 186036 637 + . . scaffold378 GLEAN promoter 188099 189098 1 - . ID=CGI_10017638; scaffold378 TRF Tandem_Repeat 188187 188243 55 + . . scaffold378 GLEAN mRNA 188260 188675 1 - . ID=CGI_10017639; scaffold378 GLEAN promoter 188676 189675 1 - . ID=CGI_10017639; scaffold378 TRF Tandem_Repeat 193713 193878 259 + . . scaffold378 GLEAN mRNA 195527 203034 0.812858 - . ID=CGI_10017640; scaffold378 TRF Tandem_Repeat 200549 200609 95 + . . scaffold378 GLEAN promoter 203035 204034 0.812858 - . ID=CGI_10017640; scaffold378 GLEAN promoter 221180 222179 0.996816 + . ID=CGI_10017641; scaffold378 GLEAN mRNA 222180 244864 0.996816 + . ID=CGI_10017641; scaffold378 GLEAN mRNA 225261 227669 1 - . ID=CGI_10017642; scaffold378 TRF Tandem_Repeat 225403 225710 508 + . . scaffold378 GLEAN promoter 227670 228669 1 - . ID=CGI_10017642; scaffold378 TRF Tandem_Repeat 232954 234212 1996 + . . scaffold378 TRF Tandem_Repeat 237968 238120 236 + . . scaffold378 WUBlastX LINE_L1-Tx1 240627 241904 227 - . . scaffold378 TRF Tandem_Repeat 241948 241983 54 + . . scaffold378 WUBlastX LINE_L1-Tx1 243441 244601 837 - . . scaffold378 WUBlastX LINE_Jockey 243570 244796 54 - . . scaffold378 WUBlastX LINE_L2 244985 245110 20 - . . scaffold378 WUBlastX LINE_L2 245000 245044 21 - . . scaffold378 WUBlastX LINE_CR1 245075 245173 22 - . . scaffold378 TRF Tandem_Repeat 245427 245591 276 + . . scaffold378 GLEAN mRNA 247048 256613 0.78919 - . ID=CGI_10017643; scaffold378 WUBlastX LINE_L1-Tx1 255095 255250 108 - . . scaffold378 WUBlastX LINE_L1 255095 255283 82 - . . scaffold378 WUBlastX LINE_L1-Tx1 255175 255420 42 - . . scaffold378 WUBlastX DNA_Maverick 255434 255988 348 - . . scaffold378 GLEAN promoter 255856 256855 0.999999 + . ID=CGI_10017644; scaffold378 GLEAN promoter 256614 257613 0.78919 - . ID=CGI_10017643; scaffold378 GLEAN mRNA 256856 259034 0.999999 + . ID=CGI_10017644; scaffold378 GLEAN mRNA 259730 259909 0.579131 - . ID=CGI_10017645; scaffold378 GLEAN promoter 259910 260909 0.579131 - . ID=CGI_10017645; scaffold378 GLEAN promoter 269392 270391 0.999372 + . ID=CGI_10017646; scaffold378 GLEAN mRNA 270392 270682 0.999372 + . ID=CGI_10017646; scaffold378 GLEAN promoter 274618 275617 0.999999 + . ID=CGI_10017647; scaffold378 GLEAN mRNA 275618 276232 0.999999 + . ID=CGI_10017647; scaffold378 TRF Tandem_Repeat 286652 286714 83 + . . scaffold378 GLEAN mRNA 287851 288351 1 - . ID=CGI_10017648; scaffold378 GLEAN promoter 288352 289351 1 - . ID=CGI_10017648; scaffold378 TRF Tandem_Repeat 296146 296183 76 + . . scaffold378 TRF Tandem_Repeat 296603 296631 58 + . . scaffold378 WUBlastX LTR_Ngaro 313202 313309 50 + . . scaffold378 WUBlastX LTR_Ngaro 313308 313679 185 + . . scaffold378 WUBlastX LTR_Ngaro 313374 313856 57 + . . scaffold378 WUBlastX LINE_RTE-X 320524 322017 522 - . . scaffold378 WUBlastX LINE_RTE-X 322008 322388 211 - . . scaffold378 WUBlastX LINE_RTE-X 322023 322622 147 - . . scaffold378 WUBlastX LINE_Rex-Babar 322964 323062 23 - . . scaffold378 WUBlastX LINE_L1 323098 323211 24 - . . scaffold378 GLEAN mRNA 325546 325884 1 - . ID=CGI_10017650; scaffold378 GLEAN promoter 325885 326884 1 - . ID=CGI_10017650; scaffold378 GLEAN mRNA 325952 326338 0.999372 - . ID=CGI_10017651; scaffold378 GLEAN promoter 326339 327338 0.999372 - . ID=CGI_10017651; scaffold378 GLEAN promoter 344560 345559 0.999245 + . ID=CGI_10017653; scaffold378 GLEAN mRNA 344618 345241 0.999372 - . ID=CGI_10017652; scaffold378 WUBlastX LTR_Gypsy 344684 345169 27 - . . scaffold378 WUBlastX LTR_Gypsy 344813 345169 58 - . . scaffold378 WUBlastX LTR_Gypsy 344975 345214 34 - . . scaffold378 GLEAN promoter 345242 346241 0.999372 - . ID=CGI_10017652; scaffold378 GLEAN mRNA 345560 346921 0.999245 + . ID=CGI_10017653; scaffold378 TRF Tandem_Repeat 350090 350136 94 + . . scaffold378 WUBlastX LINE_RTE-BovB 351598 351774 76 + . . scaffold378 GLEAN mRNA 361784 362815 0.999999 - . ID=CGI_10017654; scaffold378 GLEAN promoter 362816 363815 0.999999 - . ID=CGI_10017654; scaffold378 GLEAN mRNA 365035 378834 0.825862 - . ID=CGI_10017655; scaffold378 TRF Tandem_Repeat 368015 368049 52 + . . scaffold378 TRF Tandem_Repeat 368019 368059 55 + . . scaffold378 TRF Tandem_Repeat 375466 375546 126 + . . scaffold378 WUBlastX LINE_RTE-X 377181 377360 111 - . . scaffold378 GLEAN promoter 378835 379834 0.825862 - . ID=CGI_10017655; scaffold378 TRF Tandem_Repeat 381144 381243 173 + . . scaffold378 GLEAN promoter 381174 382173 0.593387 + . ID=CGI_10017656; scaffold378 GLEAN mRNA 382174 383055 0.593387 + . ID=CGI_10017656; scaffold378 GLEAN mRNA 387284 387484 0.987972 - . ID=CGI_10017657; scaffold378 GLEAN promoter 387485 388484 0.987972 - . ID=CGI_10017657; scaffold378 GLEAN mRNA 388601 395568 0.377996 - . ID=CGI_10017658; scaffold378 TRF Tandem_Repeat 390068 390099 64 + . . scaffold378 GLEAN promoter 395258 396257 1 + . ID=CGI_10017659; scaffold378 GLEAN promoter 395569 396568 0.377996 - . ID=CGI_10017658; scaffold378 GLEAN mRNA 396258 401192 1 + . ID=CGI_10017659; scaffold378 TRF Tandem_Repeat 399048 399084 74 + . . scaffold378 GLEAN promoter 402881 403880 0.287061 + . ID=CGI_10017660; scaffold378 GLEAN mRNA 403881 430436 0.287061 + . ID=CGI_10017660; scaffold378 TRF Tandem_Repeat 411557 412270 830 + . . scaffold378 TRF Tandem_Repeat 415817 415986 126 + . . scaffold378 GLEAN mRNA 423517 425873 1 - . ID=CGI_10017661; scaffold378 GLEAN promoter 425874 426873 1 - . ID=CGI_10017661; scaffold378 TRF Tandem_Repeat 428406 428533 229 + . . scaffold378 GLEAN mRNA 431382 436591 1 - . ID=CGI_10017662; scaffold378 TRF Tandem_Repeat 432290 432340 102 + . . scaffold378 GLEAN promoter 436592 437591 1 - . ID=CGI_10017662; scaffold378 GLEAN mRNA 438457 440863 0.777737 - . ID=CGI_10017663; scaffold378 GLEAN promoter 440864 441863 0.777737 - . ID=CGI_10017663; scaffold378 GLEAN mRNA 441644 447539 0.734179 - . ID=CGI_10017664; scaffold378 GLEAN promoter 447540 448539 0.734179 - . ID=CGI_10017664; scaffold378 GLEAN mRNA 449608 459305 0.494707 - . ID=CGI_10017665; scaffold378 GLEAN promoter 459306 460305 0.494707 - . ID=CGI_10017665; scaffold378 GLEAN mRNA 463333 472676 0.999149 - . ID=CGI_10017666; scaffold378 TRF Tandem_Repeat 464545 464569 50 + . . scaffold378 TRF Tandem_Repeat 465364 465408 90 + . . scaffold378 GLEAN promoter 472677 473676 0.999149 - . ID=CGI_10017666; scaffold378 GLEAN mRNA 473821 491455 0.495026 - . ID=CGI_10017667; scaffold378 TRF Tandem_Repeat 486525 486562 76 + . . scaffold378 GLEAN promoter 491456 492455 0.495026 - . ID=CGI_10017667; scaffold378 TRF Tandem_Repeat 496773 496902 93 + . . scaffold378 TRF Tandem_Repeat 496818 496964 73 + . . scaffold378 TRF Tandem_Repeat 497929 498702 768 + . . scaffold378 TRF Tandem_Repeat 498748 498773 52 + . . scaffold378 WUBlastX LINE_RTE-BovB 500837 500968 104 + . . scaffold378 WUBlastX LINE_RTE-BovB 500837 501001 45 + . . scaffold378 WUBlastX LINE_RTE-BovB 500971 501027 20 + . . scaffold378 WUBlastX LINE_RTE-BovB 501127 501216 40 + . . scaffold378 WUBlastX LINE_RTE-BovB 501276 501758 184 + . . scaffold378 GLEAN promoter 503952 504951 1 + . ID=CGI_10017668; scaffold378 GLEAN mRNA 504952 509449 1 + . ID=CGI_10017668; scaffold37808 GLEAN promoter 1932 2931 0.573497 + . ID=CGI_10002499; scaffold37808 GLEAN mRNA 2932 7284 0.573497 + . ID=CGI_10002499; scaffold37808 GLEAN mRNA 7357 7590 0.999372 - . ID=CGI_10002500; scaffold37808 GLEAN promoter 7591 8590 0.999372 - . ID=CGI_10002500; scaffold37816 TRF Tandem_Repeat 4631 4692 52 + . . scaffold37816 TRF Tandem_Repeat 11676 11737 124 + . . scaffold37816 TRF Tandem_Repeat 11735 11773 78 + . . scaffold37816 TRF Tandem_Repeat 11771 11853 166 + . . scaffold37816 WUBlastX LTR_DIRS? 12983 13186 113 - . . scaffold37816 TRF Tandem_Repeat 15748 15844 144 + . . scaffold37816 TRF Tandem_Repeat 15749 15844 138 + . . scaffold37816 TRF Tandem_Repeat 17292 17418 140 + . . scaffold37816 TRF Tandem_Repeat 17292 17415 118 + . . scaffold37816 TRF Tandem_Repeat 21192 21233 57 + . . scaffold37816 WUBlastX LTR_Ngaro 30665 31363 118 + . . scaffold37816 WUBlastX LTR_Ngaro 31076 31300 136 + . . scaffold37816 WUBlastX LTR_Ngaro 31317 31790 69 + . . scaffold37816 WUBlastX LTR_Ngaro 31323 31706 111 + . . scaffold37816 WUBlastX LTR_Ngaro 31808 32134 172 + . . scaffold37816 WUBlastX LTR_Ngaro 32030 32383 36 + . . scaffold37816 WUBlastX LTR_Ngaro 32371 33006 48 + . . scaffold37816 WUBlastX LTR_Ngaro 32797 33006 100 + . . scaffold37816 TRF Tandem_Repeat 34872 34944 146 + . . scaffold37834 GLEAN mRNA 17684 37815 0.656738 - . ID=CGI_10002512; scaffold37834 GLEAN promoter 37816 38815 0.656738 - . ID=CGI_10002512; scaffold37834 GLEAN promoter 38369 39368 0.996195 + . ID=CGI_10002513; scaffold37834 GLEAN mRNA 39369 40736 0.996195 + . ID=CGI_10002513; scaffold37834 GLEAN promoter 39740 40739 0.99945 + . ID=CGI_10002514; scaffold37834 GLEAN mRNA 40740 47335 0.99945 + . ID=CGI_10002514; scaffold37838 GLEAN mRNA 14424 19783 1 - . ID=CGI_10002480; scaffold37838 GLEAN promoter 19784 20783 1 - . ID=CGI_10002480; scaffold37844 GLEAN mRNA 2684 16247 0.999999 - . ID=CGI_10002508; scaffold37844 WUBlastX LINE_Penelope 5379 5669 68 - . . scaffold37844 WUBlastX LINE_Penelope 5656 5937 38 - . . scaffold37844 GLEAN promoter 16248 17247 0.999999 - . ID=CGI_10002508; scaffold37844 TRF Tandem_Repeat 25809 25838 51 + . . scaffold37844 WUBlastX LINE_CR1 27805 28419 222 - . . scaffold37844 WUBlastX LINE_CR1 27814 28329 223 - . . scaffold37844 WUBlastX LINE_CR1 27820 28230 258 - . . scaffold37844 WUBlastX LINE_L2 35223 35267 20 + . . scaffold37844 WUBlastX LINE_CR1 35973 36821 83 + . . scaffold37844 WUBlastX LINE_RTE-X 36135 36848 164 + . . scaffold37844 WUBlastX LINE_RTE-X 36135 37007 136 + . . scaffold37844 GLEAN mRNA 39329 42243 0.831047 - . ID=CGI_10002509; scaffold37844 GLEAN promoter 42244 43243 0.831047 - . ID=CGI_10002509; scaffold37844 GLEAN mRNA 42848 45243 0.830638 - . ID=CGI_10002510; scaffold37844 GLEAN promoter 45244 46243 0.830638 - . ID=CGI_10002510; scaffold37844 TRF Tandem_Repeat 45906 45979 130 + . . scaffold37844 GLEAN promoter 47498 48497 0.999372 + . ID=CGI_10002511; scaffold37844 GLEAN mRNA 48498 48701 0.999372 + . ID=CGI_10002511; scaffold37850 TRF Tandem_Repeat 1264 1402 190 + . . scaffold37850 TRF Tandem_Repeat 7923 7977 92 + . . scaffold37850 TRF Tandem_Repeat 17157 17236 151 + . . scaffold37850 WUBlastX LINE_L2 17239 17553 75 + . . scaffold37850 WUBlastX LTR_Gypsy 17907 19157 548 - . . scaffold37850 WUBlastX LTR_Gypsy 18228 19268 567 - . . scaffold37850 WUBlastX LTR_Gypsy 18261 19622 560 - . . scaffold37850 WUBlastX LTR_Gypsy 19267 20172 541 - . . scaffold37850 WUBlastX LTR_Gypsy 19606 20295 156 - . . scaffold37850 WUBlastX LTR_Gypsy 20562 20696 20 - . . scaffold37850 WUBlastX LTR_Gypsy 20637 20696 22 - . . scaffold37850 WUBlastX LTR_Gypsy 20816 20887 22 - . . scaffold37850 TRF Tandem_Repeat 21857 21909 106 + . . scaffold37850 GLEAN mRNA 25907 43095 0.999674 - . ID=CGI_10002505; scaffold37850 TRF Tandem_Repeat 38743 38799 60 + . . scaffold37850 TRF Tandem_Repeat 38743 38793 57 + . . scaffold37850 TRF Tandem_Repeat 38747 38797 66 + . . scaffold37850 GLEAN promoter 43096 44095 0.999674 - . ID=CGI_10002505; scaffold37850 GLEAN mRNA 43415 48409 0.999949 - . ID=CGI_10002506; scaffold37850 GLEAN promoter 48410 48627 0.999949 - . ID=CGI_10002506; scaffold37856 TRF Tandem_Repeat 576 691 108 + . . scaffold37856 GLEAN mRNA 1636 21111 0.99885 - . ID=CGI_10002518; scaffold37856 TRF Tandem_Repeat 11522 11592 79 + . . scaffold37856 TRF Tandem_Repeat 20265 20317 106 + . . scaffold37856 GLEAN promoter 21112 22111 0.99885 - . ID=CGI_10002518; scaffold37856 GLEAN promoter 22108 23107 0.537786 + . ID=CGI_10002519; scaffold37856 GLEAN mRNA 23108 48588 0.537786 + . ID=CGI_10002519; scaffold37856 WUBlastX LTR_Gypsy-Cigr 27340 27543 45 + . . scaffold37858 WUBlastX LINE_RTE-X 5 517 87 + . . scaffold37858 WUBlastX LINE_RTE-X 8 427 95 + . . scaffold37858 GLEAN promoter 2459 3458 0.995842 + . ID=CGI_10002515; scaffold37858 GLEAN mRNA 3459 38863 0.995842 + . ID=CGI_10002515; scaffold37858 GLEAN mRNA 10201 15936 1 - . ID=CGI_10002516; scaffold37858 TRF Tandem_Repeat 14221 14257 56 + . . scaffold37858 GLEAN promoter 15937 16936 1 - . ID=CGI_10002516; scaffold37858 TRF Tandem_Repeat 25953 25981 58 + . . scaffold37858 GLEAN promoter 38889 39888 0.999372 + . ID=CGI_10002517; scaffold37858 GLEAN mRNA 39889 40089 0.999372 + . ID=CGI_10002517; scaffold37858 TRF Tandem_Repeat 44497 44581 62 + . . scaffold37874 GLEAN promoter 36040 37039 0.999676 + . ID=CGI_10002520; scaffold37874 GLEAN mRNA 37040 43236 0.999676 + . ID=CGI_10002520; scaffold37876 WUBlastX DNA_PiggyBac 7 390 31 - . . scaffold37876 WUBlastX DNA_PiggyBac 7 300 77 - . . scaffold37876 TRF Tandem_Repeat 2413 2443 53 + . . scaffold37876 TRF Tandem_Repeat 32220 32272 97 + . . scaffold37876 TRF Tandem_Repeat 33039 33085 94 + . . scaffold37876 TRF Tandem_Repeat 35277 35332 55 + . . scaffold37876 WUBlastX LINE_Penelope 37319 37699 32 - . . scaffold37876 TRF Tandem_Repeat 45165 45198 50 + . . scaffold37876 WUBlastX LINE_L1-Tx1 47435 47785 32 + . . scaffold37880 WUBlastX DNA_Maverick 1 546 364 - . . scaffold37880 WUBlastX DNA_Maverick 1 1266 302 - . . scaffold37880 WUBlastX DNA_Maverick 2054 2173 24 - . . scaffold37880 WUBlastX DNA_Maverick 2233 2925 168 - . . scaffold37880 GLEAN mRNA 2966 17075 0.52423 - . ID=CGI_10002532; scaffold37880 TRF Tandem_Repeat 6367 6442 116 + . . scaffold37880 TRF Tandem_Repeat 9485 9518 50 + . . scaffold37880 TRF Tandem_Repeat 10374 10498 66 + . . scaffold37880 TRF Tandem_Repeat 10387 10498 104 + . . scaffold37880 WUBlastX DNA_TcMar-ISRm1 13325 13768 94 + . . scaffold37880 WUBlastX DNA_TcMar-Ant1 13487 13801 103 + . . scaffold37880 WUBlastX DNA_TcMar-Ant1 13487 13858 102 + . . scaffold37880 WUBlastX DNA_Maverick 15409 15993 352 + . . scaffold37880 GLEAN promoter 17076 18075 0.52423 - . ID=CGI_10002532; scaffold37880 GLEAN promoter 18327 19326 1 + . ID=CGI_10002533; scaffold37880 WUBlastX DNA_Zator 19063 20724 783 + . . scaffold37880 GLEAN mRNA 19327 21151 1 + . ID=CGI_10002533; scaffold37880 WUBlastX DNA_Zator 20774 21046 71 + . . scaffold37880 WUBlastX DNA_Zator 21326 21643 22 + . . scaffold37880 WUBlastX DNA_Zator 21332 21547 79 + . . scaffold37880 GLEAN promoter 24813 25812 0.999833 + . ID=CGI_10002534; scaffold37880 WUBlastX DNA_Harbinger 25678 26007 162 + . . scaffold37880 GLEAN mRNA 25813 26910 0.999833 + . ID=CGI_10002534; scaffold37880 WUBlastX DNA_Harbinger 26292 26501 130 + . . scaffold37880 WUBlastX DNA_Harbinger 26455 26559 35 + . . scaffold37880 WUBlastX DNA_Harbinger 26692 26907 51 + . . scaffold37880 WUBlastX DNA_Maverick 29352 29804 90 - . . scaffold37880 WUBlastX DNA_Maverick 29511 29948 150 - . . scaffold37880 WUBlastX DNA_Maverick 30019 30069 30 - . . scaffold37880 GLEAN mRNA 30532 30837 0.54517 - . ID=CGI_10002535; scaffold37880 GLEAN promoter 30838 31837 0.54517 - . ID=CGI_10002535; scaffold37880 GLEAN mRNA 30877 31281 0.997962 - . ID=CGI_10002536; scaffold37880 GLEAN promoter 31282 32281 0.997962 - . ID=CGI_10002536; scaffold37880 GLEAN mRNA 31298 31597 0.997335 - . ID=CGI_10002537; scaffold37880 GLEAN promoter 31598 32597 0.997335 - . ID=CGI_10002537; scaffold37880 WUBlastX DNA_Maverick 31648 32241 399 - . . scaffold37880 GLEAN mRNA 32540 47810 0.54365 - . ID=CGI_10002538; scaffold37880 GLEAN promoter 35587 36586 0.99998 + . ID=CGI_10002539; scaffold37880 GLEAN promoter 36243 37242 0.866429 + . ID=CGI_10002540; scaffold37880 GLEAN mRNA 36587 37120 0.99998 + . ID=CGI_10002539; scaffold37880 WUBlastX LTR_Copia 36707 37048 41 + . . scaffold37880 WUBlastX LTR_Copia 36836 36934 46 + . . scaffold37880 WUBlastX LTR_ERVK 36940 37155 48 + . . scaffold37880 GLEAN mRNA 37243 37407 0.866429 + . ID=CGI_10002540; scaffold37880 TRF Tandem_Repeat 40434 40545 89 + . . scaffold37880 TRF Tandem_Repeat 43794 43836 86 + . . scaffold37880 GLEAN promoter 47811 48810 0.54365 - . ID=CGI_10002538; scaffold37884 GLEAN promoter 10595 11594 0.989975 + . ID=CGI_10002526; scaffold37884 GLEAN mRNA 11595 14600 0.989975 + . ID=CGI_10002526; scaffold37884 GLEAN promoter 15911 16910 0.999981 + . ID=CGI_10002527; scaffold37884 GLEAN mRNA 16911 31630 0.999981 + . ID=CGI_10002527; scaffold37884 GLEAN promoter 30929 31928 0.997506 + . ID=CGI_10002528; scaffold37884 GLEAN mRNA 31929 44444 0.997506 + . ID=CGI_10002528; scaffold37892 TRF Tandem_Repeat 19 470 404 + . . scaffold37892 TRF Tandem_Repeat 476 522 94 + . . scaffold37892 WUBlastX LTR_Gypsy 12338 12448 23 + . . scaffold37892 WUBlastX LTR_Gypsy 12397 12651 76 + . . scaffold37892 WUBlastX LTR_Gypsy 12484 12777 66 + . . scaffold37892 TRF Tandem_Repeat 15523 15557 70 + . . scaffold37892 TRF Tandem_Repeat 17447 17473 54 + . . scaffold37892 WUBlastX DNA_Harbinger 25787 26680 640 + . . scaffold37892 WUBlastX DNA_Harbinger 27934 28332 167 - . . scaffold37892 TRF Tandem_Repeat 31841 31886 74 + . . scaffold37892 TRF Tandem_Repeat 32422 32465 88 + . . scaffold37892 TRF Tandem_Repeat 36469 36559 85 + . . scaffold37892 TRF Tandem_Repeat 46070 46184 65 + . . scaffold37900 WUBlastX LINE_RTE-BovB 4122 4328 64 - . . scaffold37900 WUBlastX LINE_RTE-BovB 4319 4690 124 - . . scaffold37900 TRF Tandem_Repeat 9249 9311 126 + . . scaffold37900 TRF Tandem_Repeat 9309 9337 58 + . . scaffold37900 GLEAN mRNA 13260 48286 0.694403 - . ID=CGI_10002507; scaffold37900 WUBlastX LINE_CR1 20370 20792 80 + . . scaffold37900 WUBlastX LINE_CR1 20436 20792 141 + . . scaffold37900 TRF Tandem_Repeat 24702 24792 78 + . . scaffold37900 WUBlastX DNA_IS4EU 27933 28421 52 + . . scaffold37900 TRF Tandem_Repeat 28989 29021 66 + . . scaffold37900 WUBlastX DNA_IS4EU 29087 29287 20 + . . scaffold37900 WUBlastX DNA_IS4EU 29448 30353 436 + . . scaffold37900 WUBlastX DNA_IS4EU 29598 30356 490 + . . scaffold37900 WUBlastX DNA_IS4EU 30711 31661 131 - . . scaffold37900 WUBlastX DNA_IS4EU 30735 31409 191 - . . scaffold37900 WUBlastX DNA_IS4EU 31933 32226 61 - . . scaffold37900 TRF Tandem_Repeat 32352 32386 70 + . . scaffold37900 GLEAN promoter 48287 48700 0.694403 - . ID=CGI_10002507; scaffold37902 GLEAN mRNA 29061 41217 0.688762 - . ID=CGI_10002542; scaffold37902 GLEAN promoter 41218 42217 0.688762 - . ID=CGI_10002542; scaffold37906 GLEAN promoter 38262 39261 0.999671 + . ID=CGI_10002543; scaffold37906 GLEAN mRNA 39262 49053 0.999671 + . ID=CGI_10002543; scaffold37938 TRF Tandem_Repeat 2744 2836 53 + . . scaffold37938 GLEAN promoter 2900 3899 0.993527 + . ID=CGI_10002549; scaffold37938 GLEAN mRNA 3900 5552 0.993527 + . ID=CGI_10002549; scaffold37938 TRF Tandem_Repeat 7792 7844 70 + . . scaffold37938 TRF Tandem_Repeat 10554 10598 56 + . . scaffold37938 WUBlastX DNA_MuDR 12544 13017 29 - . . scaffold37938 WUBlastX DNA_MuDR 12709 13077 101 - . . scaffold37938 WUBlastX DNA_MuDR 13082 13558 236 - . . scaffold37938 WUBlastX DNA_MuDR 13570 13914 28 - . . scaffold37938 TRF Tandem_Repeat 16615 16666 104 + . . scaffold37938 WUBlastX LINE_CR1-L2 20691 20768 27 + . . scaffold37938 WUBlastX LINE_CR1-L2 20719 20889 53 + . . scaffold37938 WUBlastX LINE_CR1-L2 20767 20889 72 + . . scaffold37938 WUBlastX LINE_CR1-L2 20785 20940 52 + . . scaffold37938 WUBlastX LINE_L2 20916 21170 41 + . . scaffold37938 WUBlastX LINE_L2 21173 21289 20 + . . scaffold37938 GLEAN promoter 23022 24021 0.504705 + . ID=CGI_10002550; scaffold37938 GLEAN mRNA 24022 36794 0.504705 + . ID=CGI_10002550; scaffold37938 GLEAN mRNA 26481 26714 0.999068 - . ID=CGI_10002551; scaffold37938 GLEAN promoter 26715 27714 0.999068 - . ID=CGI_10002551; scaffold37938 GLEAN mRNA 27090 27290 0.999372 - . ID=CGI_10002552; scaffold37938 GLEAN promoter 27291 28290 0.999372 - . ID=CGI_10002552; scaffold37938 TRF Tandem_Repeat 27653 27720 75 + . . scaffold37938 TRF Tandem_Repeat 27672 27729 71 + . . scaffold37938 TRF Tandem_Repeat 28286 28397 199 + . . scaffold37938 TRF Tandem_Repeat 45013 45106 120 + . . scaffold37938 WUBlastX LINE_CR1 45635 45841 46 + . . scaffold37938 WUBlastX LINE_CR1 45840 46025 63 + . . scaffold37938 WUBlastX LINE_L1-Tx1 48983 49180 52 + . . scaffold37938 WUBlastX LINE_L1 49013 49201 58 + . . scaffold37938 WUBlastX LINE_L1-Tx1 49234 49449 26 + . . scaffold37938 WUBlastX LINE_L1-Tx1 49276 49413 34 + . . scaffold37938 WUBlastX LINE_L1-Tx1 49285 49470 32 + . . scaffold37944 WUBlastX DNA_Sola 1578 1676 32 + . . scaffold37944 WUBlastX DNA_Sola 1673 2338 58 + . . scaffold37944 WUBlastX DNA_Sola 2855 3085 41 + . . scaffold37944 WUBlastX DNA_Sola 2924 3268 63 + . . scaffold37944 TRF Tandem_Repeat 3990 4751 1069 + . . scaffold37944 WUBlastX LTR_DIRS 5021 5197 27 - . . scaffold37944 WUBlastX LTR_DIRS 5268 5417 23 - . . scaffold37944 WUBlastX LTR_DIRS 5722 6015 123 - . . scaffold37944 WUBlastX LTR_DIRS 6011 6169 63 - . . scaffold37944 WUBlastX LTR_DIRS 7785 7916 38 - . . scaffold37944 WUBlastX LTR_DIRS 7903 8037 31 - . . scaffold37944 GLEAN promoter 10765 11764 0.98014 + . ID=CGI_10002559; scaffold37944 GLEAN mRNA 11765 12121 0.98014 + . ID=CGI_10002559; scaffold37944 WUBlastX LTR_Gypsy 14535 15383 112 + . . scaffold37944 WUBlastX LTR_ERV1 15007 16107 134 + . . scaffold37944 WUBlastX LTR_Gypsy 15211 16134 482 + . . scaffold37944 WUBlastX LTR_Gypsy 15400 16134 578 + . . scaffold37944 WUBlastX LTR_Gypsy 15400 16446 385 + . . scaffold37944 WUBlastX LTR_Gypsy 15400 16284 514 + . . scaffold37944 WUBlastX LTR_Gypsy 16147 16605 108 + . . scaffold37944 WUBlastX LTR_Gypsy 16404 16922 79 + . . scaffold37944 WUBlastX DNA_MuDR 18376 18594 26 - . . scaffold37944 WUBlastX DNA_MuDR 18446 19474 108 - . . scaffold37944 WUBlastX DNA_MuDR 18611 19414 227 - . . scaffold37944 WUBlastX DNA_MuDR 18692 19558 203 - . . scaffold37944 TRF Tandem_Repeat 26121 26717 491 + . . scaffold37944 WUBlastX LTR_Gypsy 27440 27979 66 - . . scaffold37944 WUBlastX LTR_Gypsy 27584 27985 85 - . . scaffold37944 TRF Tandem_Repeat 28898 28922 50 + . . scaffold37944 WUBlastX DNA_MuDR 30779 30853 26 - . . scaffold37944 WUBlastX DNA_MuDR 31022 31219 25 - . . scaffold37944 WUBlastX DNA_TcMar-Marin 33599 33811 74 + . . scaffold37944 WUBlastX LTR_Gypsy 35586 35777 84 + . . scaffold37944 TRF Tandem_Repeat 36513 36574 70 + . . scaffold37944 TRF Tandem_Repeat 36518 36571 81 + . . scaffold37944 TRF Tandem_Repeat 36598 37557 1434 + . . scaffold37944 GLEAN mRNA 38085 39906 0.747665 - . ID=CGI_10002560; scaffold37944 GLEAN promoter 39907 40906 0.747665 - . ID=CGI_10002560; scaffold37944 WUBlastX LTR_Gypsy 40558 40869 36 - . . scaffold37944 WUBlastX LTR_Gypsy 40636 40812 58 - . . scaffold37944 WUBlastX LTR_Gypsy 41623 42834 77 - . . scaffold37944 WUBlastX LTR_Gypsy 41909 42445 128 - . . scaffold37944 WUBlastX LTR_Gypsy 42445 42840 212 - . . scaffold37944 WUBlastX LTR_Gypsy-Cigr 42840 44039 138 - . . scaffold37944 WUBlastX LTR_Gypsy 43134 44084 203 - . . scaffold37944 WUBlastX LTR_Gypsy 43314 44081 242 - . . scaffold37944 WUBlastX LTR_Gypsy 43776 44141 83 - . . scaffold37944 WUBlastX LTR_Gypsy 44244 44369 31 - . . scaffold37944 WUBlastX LTR_Gypsy 45106 45663 45 - . . scaffold37944 WUBlastX DNA_Sola 48525 48872 123 - . . scaffold37944 WUBlastX DNA_Sola 48579 49502 142 - . . scaffold37944 WUBlastX DNA_Sola 49002 50165 140 - . . scaffold37944 WUBlastX DNA_Sola 49050 49502 205 - . . scaffold37944 WUBlastX DNA_Sola 49965 50402 55 - . . scaffold37944 WUBlastX DNA_Sola 49971 50285 86 - . . scaffold37946 GLEAN promoter 1025 2024 0.734311 + . ID=CGI_10002553; scaffold37946 GLEAN mRNA 2025 20198 0.734311 + . ID=CGI_10002553; scaffold37946 WUBlastX LTR_Gypsy 14050 14505 106 - . . scaffold37946 WUBlastX LTR_Gypsy 14131 14607 74 - . . scaffold37946 WUBlastX DNA_IS4EU 14533 14700 36 + . . scaffold37946 WUBlastX DNA_IS4EU 14536 14637 59 + . . scaffold37946 WUBlastX DNA_IS4EU 14696 14851 31 + . . scaffold37946 TRF Tandem_Repeat 17356 17397 52 + . . scaffold37946 TRF Tandem_Repeat 17582 17641 120 + . . scaffold37946 TRF Tandem_Repeat 23255 23310 53 + . . scaffold37946 TRF Tandem_Repeat 31643 31692 72 + . . scaffold37946 TRF Tandem_Repeat 31862 33054 1740 + . . scaffold37946 TRF Tandem_Repeat 40367 40413 94 + . . scaffold37968 TRF Tandem_Repeat 3602 3725 133 + . . scaffold37968 TRF Tandem_Repeat 3602 3713 170 + . . scaffold37968 TRF Tandem_Repeat 4198 4262 94 + . . scaffold37968 TRF Tandem_Repeat 4472 4776 283 + . . scaffold37968 TRF Tandem_Repeat 4472 4782 165 + . . scaffold37968 TRF Tandem_Repeat 5261 5296 54 + . . scaffold37968 WUBlastX LINE_L1 9815 9940 26 - . . scaffold37968 WUBlastX LINE_L2 10175 12565 764 - . . scaffold37968 WUBlastX LINE_L2 10901 12565 834 - . . scaffold37968 WUBlastX LINE_L2 12535 13215 82 - . . scaffold37968 WUBlastX LINE_L2 12565 12993 165 - . . scaffold37968 WUBlastX LINE_L2 12565 13098 144 - . . scaffold37968 WUBlastX LINE_L2 12829 13287 22 - . . scaffold37968 WUBlastX LTR_Pao 24561 25304 23 + . . scaffold37968 WUBlastX LTR_Pao 25068 25307 33 + . . scaffold37968 WUBlastX LTR_Pao 25415 26242 326 + . . scaffold37968 WUBlastX LTR_Pao 25547 26245 348 + . . scaffold37968 WUBlastX LTR_Pao 26045 27169 806 + . . scaffold37968 WUBlastX LTR_Pao 26249 27172 860 + . . scaffold37968 WUBlastX LTR_Pao 27143 27223 20 + . . scaffold37968 WUBlastX LTR_Pao 28023 28397 216 + . . scaffold37968 WUBlastX LTR_Pao 28080 29087 379 + . . scaffold37968 WUBlastX LTR_Pao 28779 29153 53 + . . scaffold37968 WUBlastX DNA_En-Spm 31536 31787 102 - . . scaffold37968 GLEAN mRNA 33668 35099 0.840391 - . ID=CGI_10002554; scaffold37968 GLEAN promoter 35100 36099 0.840391 - . ID=CGI_10002554; scaffold37968 GLEAN promoter 38462 39461 0.889923 + . ID=CGI_10002555; scaffold37968 GLEAN mRNA 39462 45111 0.889923 + . ID=CGI_10002555; scaffold37968 TRF Tandem_Repeat 43042 43117 64 + . . scaffold37968 TRF Tandem_Repeat 43051 43121 70 + . . scaffold37972 GLEAN mRNA 13775 15037 0.834707 - . ID=CGI_10002561; scaffold37972 GLEAN promoter 15038 16037 0.834707 - . ID=CGI_10002561; scaffold37972 GLEAN promoter 22423 23422 0.618241 + . ID=CGI_10002562; scaffold37972 GLEAN mRNA 23423 23740 0.618241 + . ID=CGI_10002562; scaffold37972 GLEAN promoter 27028 28027 1 + . ID=CGI_10002563; scaffold37972 GLEAN mRNA 28028 33463 1 + . ID=CGI_10002563; scaffold37972 GLEAN promoter 32986 33985 0.629517 + . ID=CGI_10002564; scaffold37972 GLEAN mRNA 33986 45971 0.629517 + . ID=CGI_10002564; scaffold37972 GLEAN mRNA 34785 36221 1 - . ID=CGI_10002565; scaffold37972 GLEAN promoter 36222 37221 1 - . ID=CGI_10002565; scaffold37990 GLEAN promoter 1 932 0.91544 + . ID=CGI_10002581; scaffold37990 GLEAN mRNA 933 10345 0.91544 + . ID=CGI_10002581; scaffold37992 TRF Tandem_Repeat 5907 5931 50 + . . scaffold37992 GLEAN promoter 6300 7299 1 + . ID=CGI_10002585; scaffold37992 GLEAN mRNA 7300 17774 1 + . ID=CGI_10002585; scaffold37992 TRF Tandem_Repeat 7509 7549 64 + . . scaffold37992 TRF Tandem_Repeat 9367 9410 88 + . . scaffold37992 TRF Tandem_Repeat 18880 18927 89 + . . scaffold37992 WUBlastX LINE_RTE-X 20434 20625 63 - . . scaffold37992 GLEAN mRNA 39161 42264 0.999958 - . ID=CGI_10002586; scaffold37992 GLEAN promoter 41783 42782 1 + . ID=CGI_10002587; scaffold37992 GLEAN promoter 42265 43264 0.999958 - . ID=CGI_10002586; scaffold37992 GLEAN mRNA 42783 48523 1 + . ID=CGI_10002587; scaffold38002 GLEAN mRNA 6665 16702 0.99628 - . ID=CGI_10002556; scaffold38002 GLEAN promoter 16703 17702 0.99628 - . ID=CGI_10002556; scaffold38002 GLEAN mRNA 17922 18098 1 - . ID=CGI_10002557; scaffold38002 GLEAN promoter 18099 19098 1 - . ID=CGI_10002557; scaffold38002 GLEAN mRNA 42010 49506 1 - . ID=CGI_10002558; scaffold38002 GLEAN promoter 49507 50506 1 - . ID=CGI_10002558; scaffold38006 WUBlastX RC_Helitron 355 522 56 + . . scaffold38006 WUBlastX RC_Helitron 542 691 30 + . . scaffold38006 WUBlastX RC_Helitron 593 682 31 + . . scaffold38006 WUBlastX RC_Helitron 720 1019 106 + . . scaffold38006 WUBlastX RC_Helitron 1154 1297 52 + . . scaffold38006 WUBlastX RC_Helitron 1175 1279 54 + . . scaffold38006 WUBlastX RC_Helitron 1664 1843 35 + . . scaffold38006 WUBlastX RC_Helitron 1703 1987 87 + . . scaffold38006 WUBlastX RC_Helitron 1703 1906 93 + . . scaffold38006 WUBlastX RC_Helitron 1703 1864 103 + . . scaffold38006 WUBlastX LINE_CR1-L2 25740 26147 128 + . . scaffold38006 WUBlastX LINE_L2 25845 26150 158 + . . scaffold38006 WUBlastX LINE_CR1-L2 25845 26267 130 + . . scaffold38006 WUBlastX LINE_CR1-L2 26191 26382 46 + . . scaffold38006 TRF Tandem_Repeat 30166 30278 63 + . . scaffold38006 TRF Tandem_Repeat 30183 30280 92 + . . scaffold38006 TRF Tandem_Repeat 31194 31238 54 + . . scaffold38006 WUBlastX DNA_Kolobok 37824 37991 84 - . . scaffold38006 GLEAN mRNA 40801 41019 0.733425 - . ID=CGI_10002580; scaffold38006 GLEAN promoter 41020 42019 0.733425 - . ID=CGI_10002580; scaffold38006 WUBlastX LINE_L2 44005 44772 358 - . . scaffold38006 WUBlastX LINE_CR1-L2 44760 44909 125 - . . scaffold38006 WUBlastX LINE_L2 44772 44969 94 - . . scaffold38006 WUBlastX LINE_L2 44975 46273 409 - . . scaffold38006 WUBlastX LINE_RTE-X 47337 47567 56 - . . scaffold38006 WUBlastX LINE_RTE-X 47406 48539 601 - . . scaffold38006 WUBlastX LINE_L2 47598 48776 283 - . . scaffold38006 WUBlastX LINE_L2 49458 49541 25 - . . scaffold38010 TRF Tandem_Repeat 415 449 61 + . . scaffold38010 GLEAN promoter 430 1429 0.69447 + . ID=CGI_10002571; scaffold38010 GLEAN mRNA 1430 2302 0.69447 + . ID=CGI_10002571; scaffold38010 GLEAN mRNA 3383 7540 0.999376 - . ID=CGI_10002572; scaffold38010 GLEAN promoter 7541 8540 0.999376 - . ID=CGI_10002572; scaffold38010 GLEAN mRNA 9556 23702 0.999915 - . ID=CGI_10002573; scaffold38010 TRF Tandem_Repeat 15680 15753 87 + . . scaffold38010 TRF Tandem_Repeat 15713 15806 116 + . . scaffold38010 GLEAN promoter 23703 24702 0.999915 - . ID=CGI_10002573; scaffold38010 GLEAN mRNA 24190 29492 1 - . ID=CGI_10002574; scaffold38010 TRF Tandem_Repeat 26201 26259 52 + . . scaffold38010 GLEAN promoter 29493 30492 1 - . ID=CGI_10002574; scaffold38010 TRF Tandem_Repeat 29543 29582 80 + . . scaffold38010 GLEAN mRNA 34085 34552 0.98667 - . ID=CGI_10002575; scaffold38010 GLEAN promoter 34553 35552 0.98667 - . ID=CGI_10002575; scaffold38010 WUBlastX LINE_RTE-X 34839 35072 59 - . . scaffold38010 WUBlastX LINE_RTE-X 35072 36268 480 - . . scaffold38010 WUBlastX LINE_Jockey 35501 36580 75 - . . scaffold38010 WUBlastX LINE_R2 35852 36349 115 - . . scaffold38010 WUBlastX LINE_CR1 36886 36981 33 - . . scaffold38010 TRF Tandem_Repeat 37308 37340 66 + . . scaffold38010 GLEAN mRNA 37428 38528 0.593387 - . ID=CGI_10002576; scaffold38010 GLEAN promoter 38529 39528 0.593387 - . ID=CGI_10002576; scaffold38010 TRF Tandem_Repeat 38558 38624 80 + . . scaffold38010 TRF Tandem_Repeat 41107 41143 74 + . . scaffold38010 TRF Tandem_Repeat 41326 41356 62 + . . scaffold38010 TRF Tandem_Repeat 41354 41422 131 + . . scaffold38010 TRF Tandem_Repeat 41905 41971 80 + . . scaffold38010 GLEAN mRNA 42101 46591 0.993363 - . ID=CGI_10002577; scaffold38010 GLEAN promoter 46592 47591 0.993363 - . ID=CGI_10002577; scaffold38010 TRF Tandem_Repeat 48883 48929 58 + . . scaffold38010 TRF Tandem_Repeat 48886 48935 66 + . . scaffold38020 TRF Tandem_Repeat 3009 3047 78 + . . scaffold38020 TRF Tandem_Repeat 4452 4493 84 + . . scaffold38020 TRF Tandem_Repeat 9531 9588 109 + . . scaffold38020 TRF Tandem_Repeat 10664 10709 92 + . . scaffold38020 TRF Tandem_Repeat 11130 11236 133 + . . scaffold38020 TRF Tandem_Repeat 13472 13499 56 + . . scaffold38020 GLEAN mRNA 13826 16121 1 - . ID=CGI_10002578; scaffold38020 GLEAN promoter 16122 17121 1 - . ID=CGI_10002578; scaffold38020 TRF Tandem_Repeat 30215 30378 247 + . . scaffold38020 WUBlastX LTR_Ngaro 38502 38663 86 + . . scaffold38020 GLEAN mRNA 50373 50561 1 - . ID=CGI_10002579; scaffold38020 TRF Tandem_Repeat 50394 50769 518 + . . scaffold38020 GLEAN promoter 50562 50882 1 - . ID=CGI_10002579; scaffold38024 GLEAN mRNA 1965 6373 0.999757 - . ID=CGI_10002582; scaffold38024 GLEAN promoter 6374 7373 0.999757 - . ID=CGI_10002582; scaffold38024 GLEAN mRNA 47020 48720 0.998967 - . ID=CGI_10002583; scaffold38024 GLEAN promoter 48721 49720 0.998967 - . ID=CGI_10002583; scaffold38026 TRF Tandem_Repeat 4209 4235 54 + . . scaffold38026 TRF Tandem_Repeat 5324 5425 116 + . . scaffold38026 TRF Tandem_Repeat 5347 5447 64 + . . scaffold38026 GLEAN mRNA 6673 7364 0.998653 - . ID=CGI_10002427; scaffold38026 GLEAN promoter 7365 8364 0.998653 - . ID=CGI_10002427; scaffold38026 WUBlastX LINE_RTE-X 8221 8706 115 + . . scaffold38026 WUBlastX LINE_RTE-X 8221 8598 138 + . . scaffold38026 WUBlastX LTR_Gypsy 23727 23897 20 + . . scaffold38026 WUBlastX LTR_Gypsy 23769 24359 33 + . . scaffold38026 GLEAN mRNA 24330 29871 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LTR_Gypsy 24684 24992 57 + . . scaffold38026 WUBlastX LTR_Gypsy 24717 24962 72 + . . scaffold38026 WUBlastX LTR_Gypsy-Cigr 24777 25109 46 + . . scaffold38026 WUBlastX LTR_Gypsy 25220 25423 76 + . . scaffold38026 WUBlastX LTR_Gypsy 25259 25435 79 + . . scaffold38026 WUBlastX LTR_Gypsy 25289 25465 103 + . . scaffold38026 WUBlastX LTR_Gypsy 25461 26642 151 + . . scaffold38026 WUBlastX LTR_Gypsy 25639 26418 320 + . . scaffold38026 WUBlastX LTR_Gypsy 26409 26840 83 + . . scaffold38026 WUBlastX LTR_Gypsy 26409 26708 181 + . . scaffold38026 WUBlastX LTR_Gypsy 26921 27808 26 + . . scaffold38026 WUBlastX LTR_Gypsy 27080 27547 90 + . . scaffold38026 WUBlastX LTR_Gypsy 27278 27835 161 + . . scaffold38026 TRF Tandem_Repeat 29391 29439 98 + . . scaffold38026 GLEAN promoter 29872 30871 1 - . ID=CGI_10002428; scaffold38026 WUBlastX LINE_L1 32522 33790 89 + . . scaffold38026 WUBlastX LINE_L1-Tx1 32729 34822 471 + . . scaffold38026 WUBlastX LINE_L1 32735 33685 482 + . . scaffold38026 WUBlastX LINE_Penelope 39974 40150 20 - . . scaffold38026 WUBlastX LINE_Penelope 40115 40213 21 - . . scaffold38026 WUBlastX LINE_Penelope 40161 40766 22 - . . scaffold38026 WUBlastX LINE_Penelope 40206 40616 54 - . . scaffold38026 TRF Tandem_Repeat 45123 45186 119 + . . scaffold38030 GLEAN promoter 1 64 0.998703 + . ID=CGI_10002590; scaffold38030 GLEAN mRNA 65 24117 0.998703 + . ID=CGI_10002590; scaffold38030 GLEAN promoter 23469 24468 1 + . ID=CGI_10002591; scaffold38030 GLEAN mRNA 24469 24874 1 + . ID=CGI_10002591; scaffold38030 GLEAN mRNA 24625 38332 0.933517 - . ID=CGI_10002592; scaffold38030 GLEAN promoter 38333 39332 0.933517 - . ID=CGI_10002592; scaffold38030 GLEAN mRNA 40247 41552 0.991132 - . ID=CGI_10002593; scaffold38030 GLEAN promoter 41553 42552 0.991132 - . ID=CGI_10002593; scaffold38030 GLEAN mRNA 46789 48693 0.999661 - . ID=CGI_10002594; scaffold38030 GLEAN promoter 48694 49693 0.999661 - . ID=CGI_10002594; scaffold38034 GLEAN promoter 34856 35855 0.776639 + . ID=CGI_10002588; scaffold38034 GLEAN mRNA 35856 36014 0.776639 + . ID=CGI_10002588; scaffold38048 GLEAN promoter 4473 5472 0.557382 + . ID=CGI_10002589; scaffold38048 GLEAN mRNA 5473 39952 0.557382 + . ID=CGI_10002589; scaffold38048 WUBlastX DNA_TcMar-Tc1 33173 33472 55 + . . scaffold38048 WUBlastX DNA_TcMar-Tc1 33366 34202 93 + . . scaffold38048 WUBlastX DNA_TcMar-Tc1 33495 34211 257 + . . scaffold38048 TRF Tandem_Repeat 37783 38598 771 + . . scaffold38048 TRF Tandem_Repeat 37785 38598 814 + . . scaffold38048 TRF Tandem_Repeat 38738 38778 73 + . . scaffold38048 TRF Tandem_Repeat 50435 51200 566 + . . scaffold38048 TRF Tandem_Repeat 50435 51200 588 + . . scaffold38054 TRF Tandem_Repeat 2591 2634 52 + . . scaffold38054 TRF Tandem_Repeat 9226 9270 72 + . . scaffold38054 GLEAN mRNA 26692 34183 0.500005 - . ID=CGI_10002610; scaffold38054 GLEAN promoter 34184 35183 0.500005 - . ID=CGI_10002610; scaffold38054 TRF Tandem_Repeat 38171 38281 97 + . . scaffold38054 TRF Tandem_Repeat 38173 38281 115 + . . scaffold38054 TRF Tandem_Repeat 38513 38554 84 + . . scaffold38054 TRF Tandem_Repeat 39502 39540 78 + . . scaffold38054 TRF Tandem_Repeat 39775 39905 135 + . . scaffold38054 TRF Tandem_Repeat 39775 39905 154 + . . scaffold38054 WUBlastX DNA_TcMar-Tc1 40510 40650 59 - . . scaffold38054 WUBlastX DNA_TcMar-Tc1 40876 41130 44 - . . scaffold38054 WUBlastX DNA_TcMar-Tc1 40915 41148 49 - . . scaffold38054 TRF Tandem_Repeat 45415 45473 118 + . . scaffold38054 TRF Tandem_Repeat 45535 45587 63 + . . scaffold38054 TRF Tandem_Repeat 45541 45580 53 + . . scaffold38054 TRF Tandem_Repeat 45757 47599 2843 + . . scaffold38054 TRF Tandem_Repeat 45757 47599 2836 + . . scaffold38054 TRF Tandem_Repeat 49138 49592 151 + . . scaffold38054 TRF Tandem_Repeat 49266 50269 321 + . . scaffold38054 TRF Tandem_Repeat 50639 50849 228 + . . scaffold38056 GLEAN mRNA 184 2311 0.999676 - . ID=CGI_10002609; scaffold38056 GLEAN promoter 2312 3311 0.999676 - . ID=CGI_10002609; scaffold38056 WUBlastX DNA_TcMar-Marin 4265 4606 67 + . . scaffold38056 WUBlastX LINE_RTE-X 40825 40899 31 - . . scaffold38056 WUBlastX LINE_Rex-Babar 45547 45765 25 - . . scaffold38056 WUBlastX LINE_I 45868 45969 21 - . . scaffold38056 WUBlastX LINE_L2 45918 46169 52 - . . scaffold38056 WUBlastX LINE_RTE-X 45954 46112 82 - . . scaffold38056 WUBlastX LINE_RTE-X 46139 46633 230 - . . scaffold38056 WUBlastX LINE_RTE-X 46621 47244 302 - . . scaffold38056 WUBlastX LINE_L2 46636 47394 162 - . . scaffold38056 TRF Tandem_Repeat 48933 49643 964 + . . scaffold38056 TRF Tandem_Repeat 49654 49692 69 + . . scaffold38056 WUBlastX LTR_Ngaro 49739 49786 22 + . . scaffold38056 WUBlastX LTR_Ngaro 49867 50331 59 + . . scaffold38056 WUBlastX LTR_Ngaro 50255 50584 72 + . . scaffold38056 WUBlastX LTR_Ngaro 50571 51143 364 + . . scaffold38056 WUBlastX LTR_Ngaro 51131 51568 304 + . . scaffold38058 TRF Tandem_Repeat 1010 1038 51 + . . scaffold38058 TRF Tandem_Repeat 3448 3479 64 + . . scaffold38058 GLEAN mRNA 3486 8173 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LTR_Gypsy 4495 4710 23 - . . scaffold38058 WUBlastX LTR_Gypsy 4573 4995 61 - . . scaffold38058 WUBlastX LTR_Gypsy 4666 5133 67 - . . scaffold38058 WUBlastX LTR_Gypsy 4718 4870 79 - . . scaffold38058 WUBlastX LTR_Gypsy 4882 4995 70 - . . scaffold38058 WUBlastX LTR_Gypsy 4986 5513 59 - . . scaffold38058 WUBlastX LTR_Gypsy-Cigr 5226 5531 118 - . . scaffold38058 WUBlastX LTR_Gypsy 5416 5667 86 - . . scaffold38058 WUBlastX LTR_Gypsy 5497 5940 31 - . . scaffold38058 TRF Tandem_Repeat 7521 7636 142 + . . scaffold38058 GLEAN promoter 8174 9173 0.999159 - . ID=CGI_10002595; scaffold38058 WUBlastX LINE_RTE-X 9303 9614 28 + . . scaffold38058 TRF Tandem_Repeat 9743 9829 79 + . . scaffold38058 TRF Tandem_Repeat 10490 10581 87 + . . scaffold38058 TRF Tandem_Repeat 19163 19411 177 + . . scaffold38058 TRF Tandem_Repeat 19170 19446 204 + . . scaffold38058 GLEAN promoter 19522 20521 0.500876 + . ID=CGI_10002596; scaffold38058 GLEAN mRNA 20522 22610 0.500876 + . ID=CGI_10002596; scaffold38058 TRF Tandem_Repeat 22418 22493 143 + . . scaffold38058 TRF Tandem_Repeat 22418 22493 89 + . . scaffold38058 TRF Tandem_Repeat 27581 27635 83 + . . scaffold38058 TRF Tandem_Repeat 27581 27622 66 + . . scaffold38058 TRF Tandem_Repeat 27584 27635 77 + . . scaffold38058 GLEAN promoter 27680 28679 0.743861 + . ID=CGI_10002597; scaffold38058 GLEAN mRNA 28680 46347 0.743861 + . ID=CGI_10002597; scaffold38058 GLEAN mRNA 29543 44062 0.999425 - . ID=CGI_10002598; scaffold38058 TRF Tandem_Repeat 31478 31539 52 + . . scaffold38058 TRF Tandem_Repeat 34211 34275 130 + . . scaffold38058 TRF Tandem_Repeat 37205 37311 162 + . . scaffold38058 TRF Tandem_Repeat 40069 40112 61 + . . scaffold38058 TRF Tandem_Repeat 41385 41453 131 + . . scaffold38058 GLEAN promoter 44063 45062 0.999425 - . ID=CGI_10002598; scaffold38062 GLEAN promoter 1 523 0.862835 + . ID=CGI_10002606; scaffold38062 GLEAN mRNA 524 13903 0.862835 + . ID=CGI_10002606; scaffold38062 GLEAN promoter 19136 20135 1 + . ID=CGI_10002607; scaffold38062 GLEAN mRNA 20136 22171 1 + . ID=CGI_10002607; scaffold38062 GLEAN mRNA 28186 51294 0.707076 - . ID=CGI_10002608; scaffold38062 GLEAN promoter 51295 51578 0.707076 - . ID=CGI_10002608; scaffold38066 WUBlastX DNA_hAT-Ac 269 988 83 - . . scaffold38066 WUBlastX DNA_hAT-Ac 1778 1882 35 - . . scaffold38066 WUBlastX DNA_hAT-Ac 1811 1897 35 - . . scaffold38066 WUBlastX DNA_hAT-Ac 2820 2912 28 - . . scaffold38066 WUBlastX DNA_hAT-Ac 2981 3067 24 - . . scaffold38066 WUBlastX DNA_hAT-Tip100 4960 5295 61 - . . scaffold38066 WUBlastX DNA_hAT-Tip100 5011 6696 588 - . . scaffold38066 WUBlastX DNA_hAT-Tip100 5035 7038 198 - . . scaffold38066 GLEAN mRNA 10251 10615 0.989299 - . ID=CGI_10002611; scaffold38066 GLEAN promoter 10616 11615 0.989299 - . ID=CGI_10002611; scaffold38066 WUBlastX DNA_hAT-Tip100 10926 11183 53 - . . scaffold38066 WUBlastX DNA_hAT-Tip100 10929 11147 55 - . . scaffold38066 WUBlastX DNA_hAT-Tip100 11943 12032 25 - . . scaffold38066 WUBlastX DNA_hAT-Tip100 12364 12675 102 - . . scaffold38066 WUBlastX DNA_hAT 12376 12768 86 - . . scaffold38066 WUBlastX DNA_hAT 12768 13277 130 - . . scaffold38066 WUBlastX DNA_hAT-Tip100 12783 13490 106 - . . scaffold38066 WUBlastX LINE_L1 22061 22297 63 + . . scaffold38066 WUBlastX LINE_L1-Tx1 22064 22399 20 + . . scaffold38066 GLEAN promoter 22087 23086 1 + . ID=CGI_10002612; scaffold38066 WUBlastX LINE_L1 22115 22342 27 + . . scaffold38066 GLEAN mRNA 23087 36782 1 + . ID=CGI_10002612; scaffold38066 WUBlastX LINE_L1-Tx1 26079 26480 127 - . . scaffold38066 TRF Tandem_Repeat 48610 50278 2153 + . . scaffold38066 WUBlastX LINE_CR1 50693 51196 164 + . . scaffold38072 GLEAN mRNA 782 2354 1 - . ID=CGI_10002602; scaffold38072 GLEAN promoter 2355 3354 1 - . ID=CGI_10002602; scaffold38072 GLEAN mRNA 5006 11307 0.985442 - . ID=CGI_10002603; scaffold38072 GLEAN promoter 11308 12307 0.985442 - . ID=CGI_10002603; scaffold38072 GLEAN promoter 13190 14189 0.999998 + . ID=CGI_10002604; scaffold38072 GLEAN mRNA 14190 15836 0.999998 + . ID=CGI_10002604; scaffold38072 GLEAN mRNA 49521 51511 0.558382 - . ID=CGI_10002605; scaffold38072 GLEAN promoter 51512 51574 0.558382 - . ID=CGI_10002605; scaffold38078 GLEAN promoter 47130 48129 0.999952 + . ID=CGI_10002616; scaffold38078 GLEAN mRNA 48130 50351 0.999952 + . ID=CGI_10002616; scaffold38078 WUBlastX LINE_L1 50853 51455 42 + . . scaffold38078 WUBlastX LINE_L2 50982 51644 124 + . . scaffold38090 GLEAN promoter 1 889 0.999324 + . ID=CGI_10002630; scaffold38090 GLEAN mRNA 890 23275 0.999324 + . ID=CGI_10002630; scaffold38090 GLEAN promoter 29726 30725 0.999949 + . ID=CGI_10002631; scaffold38090 GLEAN mRNA 30726 42168 0.999949 + . ID=CGI_10002631; scaffold381 WUBlastX DNA_IS4EU 1994 2359 40 + . . scaffold381 GLEAN promoter 2029 3028 0.978042 + . ID=CGI_10017552; scaffold381 GLEAN mRNA 3029 3556 0.978042 + . ID=CGI_10017552; scaffold381 TRF Tandem_Repeat 4119 4174 112 + . . scaffold381 TRF Tandem_Repeat 4281 4328 96 + . . scaffold381 WUBlastX LINE_CR1-L2 16485 16973 28 + . . scaffold381 WUBlastX LINE_L2 16494 16907 31 + . . scaffold381 WUBlastX LINE_CR1-L2 16500 16721 63 + . . scaffold381 TRF Tandem_Repeat 20978 21023 92 + . . scaffold381 TRF Tandem_Repeat 22596 22636 66 + . . scaffold381 TRF Tandem_Repeat 23951 24017 134 + . . scaffold381 TRF Tandem_Repeat 28010 28051 84 + . . scaffold381 TRF Tandem_Repeat 30163 30200 76 + . . scaffold381 TRF Tandem_Repeat 30581 30610 60 + . . scaffold381 TRF Tandem_Repeat 32239 32295 114 + . . scaffold381 TRF Tandem_Repeat 33220 33283 128 + . . scaffold381 TRF Tandem_Repeat 34626 34705 160 + . . scaffold381 TRF Tandem_Repeat 34745 34778 61 + . . scaffold381 TRF Tandem_Repeat 39863 40101 202 + . . scaffold381 TRF Tandem_Repeat 39863 40101 193 + . . scaffold381 TRF Tandem_Repeat 39866 40042 122 + . . scaffold381 TRF Tandem_Repeat 39878 40100 234 + . . scaffold381 TRF Tandem_Repeat 39890 40100 197 + . . scaffold381 TRF Tandem_Repeat 41260 41326 118 + . . scaffold381 TRF Tandem_Repeat 46951 46996 74 + . . scaffold381 TRF Tandem_Repeat 47039 47063 50 + . . scaffold381 GLEAN mRNA 49311 51617 0.984888 - . ID=CGI_10017553; scaffold381 TRF Tandem_Repeat 51243 51274 55 + . . scaffold381 GLEAN promoter 51618 52617 0.984888 - . ID=CGI_10017553; scaffold381 TRF Tandem_Repeat 53584 53647 110 + . . scaffold381 TRF Tandem_Repeat 54210 54887 804 + . . scaffold381 TRF Tandem_Repeat 55717 55764 96 + . . scaffold381 TRF Tandem_Repeat 57774 57818 81 + . . scaffold381 TRF Tandem_Repeat 58221 58264 79 + . . scaffold381 TRF Tandem_Repeat 58626 58677 104 + . . scaffold381 TRF Tandem_Repeat 65505 66440 960 + . . scaffold381 TRF Tandem_Repeat 65892 66199 357 + . . scaffold381 TRF Tandem_Repeat 66197 66588 290 + . . scaffold381 TRF Tandem_Repeat 66315 66474 164 + . . scaffold381 TRF Tandem_Repeat 68446 68482 60 + . . scaffold381 TRF Tandem_Repeat 69867 69979 138 + . . scaffold381 TRF Tandem_Repeat 70812 70848 74 + . . scaffold381 TRF Tandem_Repeat 72783 72828 92 + . . scaffold381 TRF Tandem_Repeat 74322 74347 52 + . . scaffold381 TRF Tandem_Repeat 75932 76004 75 + . . scaffold381 TRF Tandem_Repeat 76461 76507 94 + . . scaffold381 TRF Tandem_Repeat 109752 109785 68 + . . scaffold381 GLEAN promoter 110504 111503 0.71635 + . ID=CGI_10017554; scaffold381 GLEAN mRNA 111504 113596 0.71635 + . ID=CGI_10017554; scaffold381 GLEAN mRNA 121685 178510 0.998567 - . ID=CGI_10017555; scaffold381 TRF Tandem_Repeat 137193 137353 128 + . . scaffold381 TRF Tandem_Repeat 141068 141105 76 + . . scaffold381 TRF Tandem_Repeat 141250 141296 94 + . . scaffold381 TRF Tandem_Repeat 153640 153700 52 + . . scaffold381 TRF Tandem_Repeat 158641 158668 56 + . . scaffold381 TRF Tandem_Repeat 159723 159768 92 + . . scaffold381 TRF Tandem_Repeat 165267 165397 129 + . . scaffold381 WUBlastX LINE_Proto2 165580 166440 44 + . . scaffold381 WUBlastX LINE_L2 165715 166212 67 + . . scaffold381 WUBlastX LINE_L2 165817 167211 831 + . . scaffold381 TRF Tandem_Repeat 167506 167916 565 + . . scaffold381 TRF Tandem_Repeat 178263 178325 126 + . . scaffold381 GLEAN promoter 178511 179510 0.998567 - . ID=CGI_10017555; scaffold381 GLEAN promoter 181387 182386 1 + . ID=CGI_10017556; scaffold381 GLEAN mRNA 182387 182593 1 + . ID=CGI_10017556; scaffold381 GLEAN mRNA 183519 185795 0.996417 - . ID=CGI_10017557; scaffold381 GLEAN promoter 184092 185091 0.949646 + . ID=CGI_10017558; scaffold381 GLEAN mRNA 185092 198491 0.949646 + . ID=CGI_10017558; scaffold381 GLEAN promoter 185796 186795 0.996417 - . ID=CGI_10017557; scaffold381 TRF Tandem_Repeat 187540 187611 108 + . . scaffold381 TRF Tandem_Repeat 190218 190249 50 + . . scaffold381 TRF Tandem_Repeat 193035 193067 66 + . . scaffold381 GLEAN mRNA 200306 211895 0.999283 - . ID=CGI_10017559; scaffold381 TRF Tandem_Repeat 206033 206081 98 + . . scaffold381 TRF Tandem_Repeat 208300 208359 120 + . . scaffold381 TRF Tandem_Repeat 209034 209076 86 + . . scaffold381 TRF Tandem_Repeat 211613 211658 92 + . . scaffold381 GLEAN promoter 211896 212895 0.999283 - . ID=CGI_10017559; scaffold381 TRF Tandem_Repeat 212966 213030 130 + . . scaffold381 TRF Tandem_Repeat 214672 214727 112 + . . scaffold381 GLEAN promoter 217358 218357 0.525245 + . ID=CGI_10017560; scaffold381 GLEAN mRNA 218358 225154 0.525245 + . ID=CGI_10017560; scaffold381 TRF Tandem_Repeat 233921 234007 95 + . . scaffold381 TRF Tandem_Repeat 236659 236684 52 + . . scaffold381 TRF Tandem_Repeat 237080 237141 124 + . . scaffold381 TRF Tandem_Repeat 238264 238479 200 + . . scaffold381 WUBlastX LTR_DIRS 303537 303680 21 + . . scaffold381 WUBlastX LTR_DIRS 303632 303808 64 + . . scaffold381 WUBlastX LTR_DIRS 303830 304051 28 + . . scaffold381 WUBlastX LTR_DIRS 303932 304051 42 + . . scaffold381 WUBlastX LTR_DIRS 303938 304114 29 + . . scaffold381 WUBlastX LTR_DIRS 303974 304078 36 + . . scaffold381 WUBlastX LTR_DIRS 304056 304895 22 + . . scaffold381 WUBlastX LTR_DIRS 304290 304898 56 + . . scaffold381 WUBlastX LTR_DIRS 304395 304919 251 + . . scaffold381 WUBlastX LTR_DIRS 304904 305176 47 + . . scaffold381 WUBlastX LTR_DIRS 305267 305737 38 + . . scaffold381 WUBlastX LTR_DIRS 305709 305933 127 + . . scaffold381 TRF Tandem_Repeat 306770 306813 88 + . . scaffold381 WUBlastX LINE_CR1-L2 312549 312629 25 - . . scaffold381 WUBlastX LINE_CR1-L2 312578 313159 36 - . . scaffold381 WUBlastX LINE_CR1-L2 312650 313078 72 - . . scaffold381 TRF Tandem_Repeat 328787 328825 60 + . . scaffold381 WUBlastX LINE_L1-Tx1 334010 334669 80 - . . scaffold381 TRF Tandem_Repeat 334932 334970 62 + . . scaffold381 GLEAN promoter 357139 358138 0.668984 + . ID=CGI_10017563; scaffold381 GLEAN mRNA 358139 378369 0.668984 + . ID=CGI_10017563; scaffold381 TRF Tandem_Repeat 361878 361902 50 + . . scaffold381 TRF Tandem_Repeat 365361 366086 952 + . . scaffold381 TRF Tandem_Repeat 370405 370444 80 + . . scaffold381 TRF Tandem_Repeat 375878 375919 66 + . . scaffold381 TRF Tandem_Repeat 382292 382332 73 + . . scaffold381 TRF Tandem_Repeat 388558 388635 156 + . . scaffold381 GLEAN promoter 389947 390946 1 + . ID=CGI_10017564; scaffold381 GLEAN mRNA 390947 407770 1 + . ID=CGI_10017564; scaffold381 TRF Tandem_Repeat 393718 393754 74 + . . scaffold381 TRF Tandem_Repeat 394639 394685 85 + . . scaffold381 TRF Tandem_Repeat 396656 396689 68 + . . scaffold381 TRF Tandem_Repeat 401003 401104 123 + . . scaffold381 TRF Tandem_Repeat 401003 401104 105 + . . scaffold381 TRF Tandem_Repeat 401006 401102 88 + . . scaffold381 TRF Tandem_Repeat 401898 401923 52 + . . scaffold381 TRF Tandem_Repeat 401958 402029 144 + . . scaffold381 TRF Tandem_Repeat 406842 406895 99 + . . scaffold381 GLEAN mRNA 412276 427069 0.998876 - . ID=CGI_10017565; scaffold381 TRF Tandem_Repeat 420009 420035 54 + . . scaffold381 TRF Tandem_Repeat 420087 420165 158 + . . scaffold381 TRF Tandem_Repeat 426101 426763 1218 + . . scaffold381 GLEAN promoter 427070 428069 0.998876 - . ID=CGI_10017565; scaffold381 TRF Tandem_Repeat 427796 428093 463 + . . scaffold381 TRF Tandem_Repeat 427808 428093 403 + . . scaffold381 TRF Tandem_Repeat 429531 429800 360 + . . scaffold381 GLEAN mRNA 430162 460289 0.970742 - . ID=CGI_10017566; scaffold381 TRF Tandem_Repeat 432343 432456 183 + . . scaffold381 TRF Tandem_Repeat 433987 434027 82 + . . scaffold381 WUBlastX LINE_RTE-BovB 441214 441987 333 - . . scaffold381 WUBlastX LINE_RTE-BovB 441996 442313 373 - . . scaffold381 WUBlastX LINE_L1 442002 442592 29 - . . scaffold381 WUBlastX LINE_R2 442020 442397 72 - . . scaffold381 GLEAN promoter 459534 460533 0.789941 + . ID=CGI_10017567; scaffold381 GLEAN promoter 460290 461289 0.970742 - . ID=CGI_10017566; scaffold381 GLEAN mRNA 460534 467831 0.789941 + . ID=CGI_10017567; scaffold381 TRF Tandem_Repeat 476926 476971 92 + . . scaffold381 GLEAN mRNA 479700 480965 0.531302 - . ID=CGI_10017568; scaffold381 GLEAN promoter 480966 481965 0.531302 - . ID=CGI_10017568; scaffold381 TRF Tandem_Repeat 495731 495776 92 + . . scaffold381 GLEAN mRNA 501925 510450 1 - . ID=CGI_10017570; scaffold381 GLEAN promoter 510451 510451 1 - . ID=CGI_10017570; scaffold38108 TRF Tandem_Repeat 27149 29772 3023 + . . scaffold38108 GLEAN mRNA 27822 30806 0.612703 - . ID=CGI_10002629; scaffold38108 GLEAN promoter 30807 31806 0.612703 - . ID=CGI_10002629; scaffold38108 TRF Tandem_Repeat 33409 33474 123 + . . scaffold38108 TRF Tandem_Repeat 34814 34872 118 + . . scaffold38108 TRF Tandem_Repeat 35180 35229 57 + . . scaffold38108 WUBlastX LINE_L1-Tx1 38289 38852 157 + . . scaffold38108 WUBlastX LINE_L1-Tx1 38846 39544 115 + . . scaffold38108 WUBlastX LINE_L1-Tx1 39505 39639 25 + . . scaffold38108 TRF Tandem_Repeat 39981 40020 80 + . . scaffold38108 TRF Tandem_Repeat 41497 41691 129 + . . scaffold38108 WUBlastX LTR_Ngaro 43128 43583 106 + . . scaffold38108 WUBlastX LTR_Ngaro 43218 43592 108 + . . scaffold38108 TRF Tandem_Repeat 47414 47476 117 + . . scaffold38108 TRF Tandem_Repeat 49924 49961 76 + . . scaffold38116 WUBlastX LINE_RTE-X 1 162 37 - . . scaffold38116 WUBlastX LTR_Pao 2479 2832 169 + . . scaffold38116 WUBlastX LTR_Pao 2485 2754 213 + . . scaffold38116 WUBlastX LTR_Pao 2756 2923 37 + . . scaffold38116 TRF Tandem_Repeat 7085 7800 863 + . . scaffold38116 TRF Tandem_Repeat 7085 7800 852 + . . scaffold38116 TRF Tandem_Repeat 7803 7865 90 + . . scaffold38116 TRF Tandem_Repeat 7806 7865 75 + . . scaffold38116 TRF Tandem_Repeat 7818 7864 85 + . . scaffold38116 WUBlastX LINE_L1-Tx1 12077 12427 56 - . . scaffold38116 WUBlastX LINE_L1-Tx1 13233 14186 352 - . . scaffold38116 WUBlastX LINE_L1-Tx1 14156 14479 170 - . . scaffold38116 WUBlastX LINE_L1-Tx1 14174 14563 122 - . . scaffold38116 WUBlastX LTR_Gypsy 15357 15539 79 - . . scaffold38116 WUBlastX LTR_Gypsy 15399 15539 90 - . . scaffold38116 WUBlastX LTR_Gypsy 15429 15887 104 - . . scaffold38116 WUBlastX LTR_Gypsy 15573 15872 201 - . . scaffold38116 WUBlastX LTR_Gypsy 15639 15872 210 - . . scaffold38116 WUBlastX LTR_Gypsy 15878 16636 592 - . . scaffold38116 WUBlastX LTR_Gypsy 15878 16477 617 - . . scaffold38116 WUBlastX LTR_Gypsy 16479 16751 21 - . . scaffold38116 TRF Tandem_Repeat 23036 23065 60 + . . scaffold38116 TRF Tandem_Repeat 30206 30245 71 + . . scaffold38116 TRF Tandem_Repeat 33205 33507 427 + . . scaffold38116 TRF Tandem_Repeat 51910 51981 74 + . . scaffold38116 TRF Tandem_Repeat 51910 51980 79 + . . scaffold38122 GLEAN promoter 918 1917 1 + . ID=CGI_10002632; scaffold38122 TRF Tandem_Repeat 1703 1727 50 + . . scaffold38122 GLEAN mRNA 1918 7067 1 + . ID=CGI_10002632; scaffold38122 GLEAN promoter 33383 34382 0.991103 + . ID=CGI_10002633; scaffold38122 TRF Tandem_Repeat 34230 34285 91 + . . scaffold38122 GLEAN mRNA 34383 35206 0.991103 + . ID=CGI_10002633; scaffold38122 WUBlastX DNA_Maverick 36713 37462 198 - . . scaffold38122 WUBlastX DNA_Maverick 37078 37533 77 - . . scaffold38122 WUBlastX LTR_Gypsy 38177 38233 20 - . . scaffold38122 TRF Tandem_Repeat 40990 41027 76 + . . scaffold38122 WUBlastX DNA_IS4EU 44745 45407 38 - . . scaffold38122 WUBlastX DNA_IS4EU 44745 45266 139 - . . scaffold38122 WUBlastX LTR_Pao 47538 47939 34 - . . scaffold38122 WUBlastX LTR_Pao 47609 47785 70 - . . scaffold38122 WUBlastX LTR_Pao 47636 47773 94 - . . scaffold38122 WUBlastX LTR_Pao 47642 47797 77 - . . scaffold38122 WUBlastX LTR_Pao 47778 47939 61 - . . scaffold38122 WUBlastX LTR_Pao 47851 48450 253 - . . scaffold38122 WUBlastX LTR_Pao 48061 48450 278 - . . scaffold38122 WUBlastX LTR_Pao 48094 48516 98 - . . scaffold38122 WUBlastX LTR_Pao 48519 49772 299 - . . scaffold38122 WUBlastX LTR_Pao 48726 49772 327 - . . scaffold38122 WUBlastX LTR_Pao 49996 50112 53 - . . scaffold38122 WUBlastX LTR_Pao 50032 50172 20 - . . scaffold38122 WUBlastX LTR_Pao 50410 50616 38 - . . scaffold38122 WUBlastX LTR_Pao 50566 50772 88 - . . scaffold38130 TRF Tandem_Repeat 10931 11068 162 + . . scaffold38130 TRF Tandem_Repeat 10931 11068 162 + . . scaffold38130 TRF Tandem_Repeat 10931 11068 162 + . . scaffold38130 TRF Tandem_Repeat 11790 11865 107 + . . scaffold38130 WUBlastX RC_Helitron 15739 15918 25 + . . scaffold38130 WUBlastX RC_Helitron 15772 15909 35 + . . scaffold38130 WUBlastX RC_Helitron 15799 15975 39 + . . scaffold38130 WUBlastX RC_Helitron 15955 16254 74 + . . scaffold38130 WUBlastX RC_Helitron 15961 16335 57 + . . scaffold38130 WUBlastX RC_Helitron 16054 16500 20 + . . scaffold38130 WUBlastX DNA_Helitron 16526 17143 76 + . . scaffold38130 TRF Tandem_Repeat 22726 22790 55 + . . scaffold38130 TRF Tandem_Repeat 24215 24242 56 + . . scaffold38130 GLEAN mRNA 25137 30326 0.998369 - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 27372 27998 296 - . . scaffold38130 WUBlastX DNA_Maverick 28155 28556 110 - . . scaffold38130 WUBlastX DNA_Maverick 28724 29824 372 - . . scaffold38130 GLEAN promoter 30327 31326 0.998369 - . ID=CGI_10002636; scaffold38130 WUBlastX DNA_Maverick 30401 30634 84 - . . scaffold38130 WUBlastX DNA_Maverick 30407 30730 52 - . . scaffold38130 WUBlastX DNA_Maverick 30665 30784 29 - . . scaffold38130 WUBlastX DNA_Maverick 30851 30982 73 - . . scaffold38130 WUBlastX DNA_Maverick 30942 31211 144 - . . scaffold38130 WUBlastX DNA_Maverick 30993 32012 511 - . . scaffold38130 GLEAN mRNA 32205 35051 0.988307 - . ID=CGI_10002637; scaffold38130 WUBlastX LTR_Gypsy 32307 32507 26 - . . scaffold38130 WUBlastX DNA_Maverick 32847 33005 24 - . . scaffold38130 GLEAN promoter 35052 36051 0.988307 - . ID=CGI_10002637; scaffold38130 WUBlastX DNA_Maverick 37712 38035 66 + . . scaffold38130 WUBlastX DNA_Maverick 37772 38020 138 + . . scaffold38130 GLEAN promoter 38584 39583 0.238967 + . ID=CGI_10002638; scaffold38130 GLEAN mRNA 39584 52365 0.238967 + . ID=CGI_10002638; scaffold38130 TRF Tandem_Repeat 40856 40902 85 + . . scaffold38136 WUBlastX DNA_Maverick 287 763 169 - . . scaffold38136 WUBlastX DNA_Maverick 773 1561 480 - . . scaffold38136 TRF Tandem_Repeat 23551 24419 938 + . . scaffold38136 TRF Tandem_Repeat 28035 28543 831 + . . scaffold38136 WUBlastX LINE_L1 28559 28879 50 - . . scaffold38136 WUBlastX LINE_L1-Tx1 28656 28802 64 - . . scaffold38136 WUBlastX LINE_L1 28801 29160 92 - . . scaffold38136 WUBlastX LINE_L1-Tx1 28876 29295 221 - . . scaffold38136 TRF Tandem_Repeat 29299 29335 74 + . . scaffold38136 GLEAN promoter 29344 30343 0.813967 + . ID=CGI_10002634; scaffold38136 TRF Tandem_Repeat 30084 30108 50 + . . scaffold38136 GLEAN mRNA 30344 37604 0.813967 + . ID=CGI_10002634; scaffold38136 TRF Tandem_Repeat 33647 35733 1769 + . . scaffold38136 TRF Tandem_Repeat 42334 42375 57 + . . scaffold38136 WUBlastX DNA_Maverick 45859 46137 155 + . . scaffold38136 TRF Tandem_Repeat 48937 48976 71 + . . scaffold38136 TRF Tandem_Repeat 49114 49565 459 + . . scaffold38136 GLEAN mRNA 52420 52641 0.618186 - . ID=CGI_10002635; scaffold38136 GLEAN promoter 52642 52654 0.618186 - . ID=CGI_10002635; scaffold38148 GLEAN promoter 962 1961 0.99822 + . ID=CGI_10002640; scaffold38148 GLEAN mRNA 1962 7712 0.99822 + . ID=CGI_10002640; scaffold38148 TRF Tandem_Repeat 3852 4853 1406 + . . scaffold38148 GLEAN mRNA 7857 11388 1 - . ID=CGI_10002641; scaffold38148 GLEAN promoter 10615 11614 1 + . ID=CGI_10002642; scaffold38148 GLEAN promoter 11389 12388 1 - . ID=CGI_10002641; scaffold38148 GLEAN mRNA 11615 16775 1 + . ID=CGI_10002642; scaffold38148 TRF Tandem_Repeat 17227 17284 116 + . . scaffold38148 WUBlastX LINE_RTE-X 22621 23115 154 + . . scaffold38148 TRF Tandem_Repeat 25021 25054 59 + . . scaffold38148 TRF Tandem_Repeat 25053 25144 175 + . . scaffold38148 GLEAN mRNA 33347 40514 1 - . ID=CGI_10002643; scaffold38148 TRF Tandem_Repeat 38327 38388 54 + . . scaffold38148 TRF Tandem_Repeat 39776 39941 129 + . . scaffold38148 TRF Tandem_Repeat 39940 40127 225 + . . scaffold38148 TRF Tandem_Repeat 40010 40127 130 + . . scaffold38148 GLEAN promoter 40515 41514 1 - . ID=CGI_10002643; scaffold38148 TRF Tandem_Repeat 43474 43537 101 + . . scaffold38148 TRF Tandem_Repeat 49397 49434 58 + . . scaffold38148 TRF Tandem_Repeat 50140 50167 56 + . . scaffold38148 TRF Tandem_Repeat 52676 52717 52 + . . scaffold38152 GLEAN mRNA 1846 12564 0.999993 - . ID=CGI_10002678; scaffold38152 WUBlastX DNA_hAT-hATw 6737 8071 152 - . . scaffold38152 WUBlastX DNA_hAT-hATw 6752 9220 104 - . . scaffold38152 TRF Tandem_Repeat 10532 10571 53 + . . scaffold38152 TRF Tandem_Repeat 11162 11240 67 + . . scaffold38152 TRF Tandem_Repeat 11162 11230 84 + . . scaffold38152 TRF Tandem_Repeat 11174 11230 69 + . . scaffold38152 GLEAN promoter 12565 13564 0.999993 - . ID=CGI_10002678; scaffold38152 GLEAN mRNA 27084 29060 0.990757 - . ID=CGI_10002679; scaffold38152 GLEAN promoter 29061 30060 0.990757 - . ID=CGI_10002679; scaffold38152 GLEAN promoter 32507 33506 0.990859 + . ID=CGI_10002680; scaffold38152 GLEAN mRNA 33507 34455 0.990859 + . ID=CGI_10002680; scaffold38152 TRF Tandem_Repeat 38744 38774 62 + . . scaffold38152 TRF Tandem_Repeat 42796 44223 1556 + . . scaffold38152 WUBlastX LTR_Gypsy 47932 49890 508 - . . scaffold38152 WUBlastX LTR_Gypsy-Cigr 48205 49833 563 - . . scaffold38152 WUBlastX LTR_Gypsy 48472 49767 683 - . . scaffold38152 WUBlastX LTR_Gypsy 49826 50356 182 - . . scaffold38152 WUBlastX LTR_Gypsy 49997 50368 370 - . . scaffold38152 WUBlastX LTR_Gypsy 50951 51013 30 - . . scaffold38162 TRF Tandem_Repeat 7912 7952 55 + . . scaffold38162 GLEAN promoter 10774 11773 0.999335 + . ID=CGI_10002646; scaffold38162 GLEAN mRNA 11774 17585 0.999335 + . ID=CGI_10002646; scaffold38162 TRF Tandem_Repeat 12190 12247 116 + . . scaffold38162 TRF Tandem_Repeat 13590 13617 56 + . . scaffold38162 TRF Tandem_Repeat 23979 24153 278 + . . scaffold38162 TRF Tandem_Repeat 23979 24173 264 + . . scaffold38162 TRF Tandem_Repeat 23988 24173 219 + . . scaffold38162 WUBlastX LINE_L1-Tx1 24904 25926 172 - . . scaffold38162 WUBlastX LTR_Gypsy 31367 32149 206 + . . scaffold38162 WUBlastX LTR_Gypsy 33173 33424 35 + . . scaffold38162 WUBlastX LTR_Gypsy 33218 33472 48 + . . scaffold38162 WUBlastX LTR_Gypsy 33257 34609 595 + . . scaffold38162 WUBlastX LTR_Gypsy 33542 34606 623 + . . scaffold38162 WUBlastX LTR_Gypsy 34588 35307 338 + . . scaffold38162 WUBlastX LTR_Gypsy 34999 36093 307 + . . scaffold38162 WUBlastX LTR_Gypsy 35554 36087 395 + . . scaffold38162 TRF Tandem_Repeat 37431 37906 415 + . . scaffold38166 GLEAN promoter 5788 6787 0.999993 + . ID=CGI_10002653; scaffold38166 GLEAN mRNA 6788 14504 0.999993 + . ID=CGI_10002653; scaffold38166 GLEAN promoter 21309 22308 1 + . ID=CGI_10002654; scaffold38166 GLEAN mRNA 22309 25422 1 + . ID=CGI_10002654; scaffold38166 GLEAN promoter 28767 29766 0.814164 + . ID=CGI_10002655; scaffold38166 GLEAN mRNA 29767 31120 0.814164 + . ID=CGI_10002655; scaffold38166 GLEAN mRNA 41363 43159 0.528485 - . ID=CGI_10002656; scaffold38166 GLEAN promoter 43160 44159 0.528485 - . ID=CGI_10002656; scaffold38174 GLEAN mRNA 3004 35140 0.929162 - . ID=CGI_10002649; scaffold38174 GLEAN promoter 34538 35537 1 + . ID=CGI_10002650; scaffold38174 GLEAN promoter 35141 36140 0.929162 - . ID=CGI_10002649; scaffold38174 GLEAN mRNA 35538 39359 1 + . ID=CGI_10002650; scaffold38174 GLEAN mRNA 42906 45277 1 - . ID=CGI_10002651; scaffold38174 GLEAN promoter 45278 46277 1 - . ID=CGI_10002651; scaffold38174 GLEAN mRNA 48163 51498 0.558395 - . ID=CGI_10002652; scaffold38174 GLEAN promoter 51499 52498 0.558395 - . ID=CGI_10002652; scaffold38184 GLEAN mRNA 5007 49120 0.713102 - . ID=CGI_10002647; scaffold38184 GLEAN promoter 49121 50120 0.713102 - . ID=CGI_10002647; scaffold38186 WUBlastX DNA_IS4EU 5 202 35 - . . scaffold38186 WUBlastX DNA_IS4EU 748 1080 51 - . . scaffold38186 TRF Tandem_Repeat 10365 10394 60 + . . scaffold38186 GLEAN mRNA 23627 52815 0.998684 - . ID=CGI_10002657; scaffold38186 TRF Tandem_Repeat 32049 32087 78 + . . scaffold38186 TRF Tandem_Repeat 40818 40855 58 + . . scaffold38186 GLEAN promoter 52816 53430 0.998684 - . ID=CGI_10002657; scaffold38190 WUBlastX LINE_RTE-X 1144 1968 220 - . . scaffold38190 WUBlastX LINE_RTE-X 1294 1968 257 - . . scaffold38190 WUBlastX LINE_RTE-X 1932 2411 275 - . . scaffold38190 TRF Tandem_Repeat 2436 2718 252 + . . scaffold38190 GLEAN mRNA 8940 11525 0.865587 - . ID=CGI_10002644; scaffold38190 GLEAN promoter 11526 12525 0.865587 - . ID=CGI_10002644; scaffold38190 TRF Tandem_Repeat 11753 11838 86 + . . scaffold38190 TRF Tandem_Repeat 12091 12155 121 + . . scaffold38190 TRF Tandem_Repeat 12341 12369 58 + . . scaffold38190 TRF Tandem_Repeat 12676 12750 107 + . . scaffold38190 TRF Tandem_Repeat 14257 14283 54 + . . scaffold38190 TRF Tandem_Repeat 14551 14587 74 + . . scaffold38190 TRF Tandem_Repeat 16134 16181 60 + . . scaffold38190 TRF Tandem_Repeat 16137 16181 81 + . . scaffold38190 TRF Tandem_Repeat 16835 16880 51 + . . scaffold38190 TRF Tandem_Repeat 16941 16997 62 + . . scaffold38190 TRF Tandem_Repeat 17187 17212 52 + . . scaffold38190 TRF Tandem_Repeat 17346 17391 92 + . . scaffold38190 TRF Tandem_Repeat 17452 17515 121 + . . scaffold38190 TRF Tandem_Repeat 17582 17629 96 + . . scaffold38190 TRF Tandem_Repeat 19576 20538 1497 + . . scaffold38190 TRF Tandem_Repeat 20569 20628 84 + . . scaffold38190 TRF Tandem_Repeat 24627 24775 244 + . . scaffold38190 TRF Tandem_Repeat 26842 26974 203 + . . scaffold38190 TRF Tandem_Repeat 33236 33601 610 + . . scaffold38190 GLEAN mRNA 35056 50913 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 36075 37330 1754 + . . scaffold38190 TRF Tandem_Repeat 38854 39114 468 + . . scaffold38190 TRF Tandem_Repeat 41495 41941 366 + . . scaffold38190 TRF Tandem_Repeat 42810 43245 809 + . . scaffold38190 TRF Tandem_Repeat 43257 43969 1016 + . . scaffold38190 TRF Tandem_Repeat 44635 44753 211 + . . scaffold38190 TRF Tandem_Repeat 44888 45255 619 + . . scaffold38190 TRF Tandem_Repeat 46918 47297 634 + . . scaffold38190 TRF Tandem_Repeat 46918 47578 996 + . . scaffold38190 TRF Tandem_Repeat 46918 47578 1007 + . . scaffold38190 TRF Tandem_Repeat 47281 47323 59 + . . scaffold38190 TRF Tandem_Repeat 47299 47578 434 + . . scaffold38190 GLEAN promoter 50914 51913 0.645487 - . ID=CGI_10002645; scaffold38190 TRF Tandem_Repeat 52013 52062 100 + . . scaffold38194 TRF Tandem_Repeat 6547 6597 93 + . . scaffold38194 GLEAN mRNA 7006 28224 0.999182 - . ID=CGI_10002658; scaffold38194 TRF Tandem_Repeat 27770 27819 100 + . . scaffold38194 GLEAN promoter 28225 29224 0.999182 - . ID=CGI_10002658; scaffold38194 GLEAN promoter 31957 32956 0.914846 + . ID=CGI_10002659; scaffold38194 GLEAN mRNA 32957 41504 0.914846 + . ID=CGI_10002659; scaffold38194 WUBlastX LTR_Gypsy 45344 47329 296 + . . scaffold38194 WUBlastX DNA_Maverick 47325 47654 252 - . . scaffold38194 WUBlastX DNA_Maverick 47663 48148 377 - . . scaffold38194 WUBlastX LTR_Gypsy 49316 49810 118 + . . scaffold38194 WUBlastX LTR_Gypsy 49499 49807 162 + . . scaffold38194 WUBlastX LTR_Gypsy 49553 49807 175 + . . scaffold38194 WUBlastX LTR_Gypsy 49583 49897 95 + . . scaffold38196 TRF Tandem_Repeat 468 551 168 + . . scaffold38196 TRF Tandem_Repeat 4197 4232 72 + . . scaffold38196 TRF Tandem_Repeat 5073 5104 64 + . . scaffold38196 GLEAN mRNA 7334 15146 0.999114 - . ID=CGI_10002666; scaffold38196 TRF Tandem_Repeat 11325 11382 116 + . . scaffold38196 GLEAN promoter 15147 16146 0.999114 - . ID=CGI_10002666; scaffold38196 GLEAN mRNA 15399 24658 0.998466 - . ID=CGI_10002667; scaffold38196 TRF Tandem_Repeat 18757 18960 273 + . . scaffold38196 GLEAN promoter 24659 25658 0.998466 - . ID=CGI_10002667; scaffold38196 WUBlastX LINE_L2 26809 27759 79 + . . scaffold38196 WUBlastX LINE_RTE-X 27028 29157 431 + . . scaffold38196 WUBlastX LINE_RTE-X 27637 29265 739 + . . scaffold38196 GLEAN mRNA 34266 44836 0.999027 - . ID=CGI_10002668; scaffold38196 GLEAN promoter 44837 45836 0.999027 - . ID=CGI_10002668; scaffold382 WUBlastX LINE_CR1-L2 1282 1707 65 - . . scaffold382 WUBlastX LINE_CR1-L2 1495 1707 79 - . . scaffold382 WUBlastX LINE_CR1 1498 1821 49 - . . scaffold382 WUBlastX LINE_L2 1504 1752 51 - . . scaffold382 WUBlastX LINE_CR1 1803 1859 32 - . . scaffold382 WUBlastX LINE_CR1-L2 1864 1986 24 - . . scaffold382 WUBlastX LINE_CR1 1864 1914 40 - . . scaffold382 WUBlastX LINE_CR1 1867 1950 37 - . . scaffold382 WUBlastX DNA_IS4EU 5302 5718 76 - . . scaffold382 WUBlastX DNA_IS4EU 5506 5832 62 - . . scaffold382 WUBlastX DNA_IS4EU 6526 6687 25 - . . scaffold382 WUBlastX LINE_L2 11026 12036 121 + . . scaffold382 WUBlastX LINE_L1-Tx1 11305 12054 532 + . . scaffold382 WUBlastX DNA_Academ 23593 24345 52 + . . scaffold382 WUBlastX DNA_Academ 24533 24928 121 + . . scaffold382 WUBlastX DNA_Academ 25165 25596 108 + . . scaffold382 WUBlastX DNA_Academ 25598 25660 25 + . . scaffold382 WUBlastX DNA_IS4EU 35299 35817 112 - . . scaffold382 WUBlastX DNA_IS4EU 35299 35946 83 - . . scaffold382 GLEAN promoter 39511 40510 0.0752347 + . ID=CGI_10004503; scaffold382 GLEAN mRNA 40511 73048 0.0752347 + . ID=CGI_10004503; scaffold382 WUBlastX DNA_IS4EU 41809 42723 440 + . . scaffold382 WUBlastX DNA_Kolobok-IS4 42766 43545 104 - . . scaffold382 WUBlastX DNA_Kolobok-IS4 42817 43407 154 - . . scaffold382 WUBlastX RC_Helitron 48171 48254 25 - . . scaffold382 WUBlastX RC_Helitron 48304 48549 27 - . . scaffold382 TRF Tandem_Repeat 56385 56442 116 + . . scaffold382 TRF Tandem_Repeat 57576 57750 122 + . . scaffold382 WUBlastX DNA_Harbinger 81167 81277 68 + . . scaffold382 TRF Tandem_Repeat 81940 82004 112 + . . scaffold382 GLEAN mRNA 89194 100898 0.725518 - . ID=CGI_10004504; scaffold382 TRF Tandem_Repeat 93263 93313 102 + . . scaffold382 TRF Tandem_Repeat 94941 94997 78 + . . scaffold382 TRF Tandem_Repeat 94942 94988 76 + . . scaffold382 TRF Tandem_Repeat 99393 99449 73 + . . scaffold382 GLEAN promoter 100899 101425 0.725518 - . ID=CGI_10004504; scaffold38210 TRF Tandem_Repeat 5350 6042 1133 + . . scaffold38210 TRF Tandem_Repeat 6792 6846 67 + . . scaffold38210 GLEAN mRNA 7747 30035 0.24289 - . ID=CGI_10002673; scaffold38210 TRF Tandem_Repeat 15896 15958 65 + . . scaffold38210 TRF Tandem_Repeat 15896 15937 57 + . . scaffold38210 TRF Tandem_Repeat 15896 15954 64 + . . scaffold38210 TRF Tandem_Repeat 18451 18500 100 + . . scaffold38210 WUBlastX LINE_L2 22291 22977 110 + . . scaffold38210 WUBlastX LINE_L1 22348 22920 209 + . . scaffold38210 WUBlastX LINE_L2 22874 23455 31 + . . scaffold38210 WUBlastX LINE_RTE-X 23150 23869 144 + . . scaffold38210 WUBlastX LINE_RTE-X 23552 24565 158 + . . scaffold38210 WUBlastX LINE_Jockey 24452 24586 32 + . . scaffold38210 WUBlastX LINE_RTE-X 24588 24764 140 + . . scaffold38210 WUBlastX LINE_RTE-X 24776 25924 305 + . . scaffold38210 GLEAN promoter 30036 31035 0.24289 - . ID=CGI_10002673; scaffold38210 GLEAN promoter 36221 37220 0.949052 + . ID=CGI_10002674; scaffold38210 GLEAN mRNA 37221 38391 0.949052 + . ID=CGI_10002674; scaffold38210 GLEAN mRNA 43454 45043 0.810408 - . ID=CGI_10002675; scaffold38210 WUBlastX LTR_Pao 44192 44710 28 - . . scaffold38210 GLEAN promoter 45044 46043 0.810408 - . ID=CGI_10002675; scaffold38210 TRF Tandem_Repeat 51458 52190 992 + . . scaffold38216 TRF Tandem_Repeat 1486 1510 50 + . . scaffold38216 TRF Tandem_Repeat 7126 7244 109 + . . scaffold38216 TRF Tandem_Repeat 8568 8601 50 + . . scaffold38216 GLEAN mRNA 11693 24508 0.785148 - . ID=CGI_10002677; scaffold38216 GLEAN promoter 24509 25508 0.785148 - . ID=CGI_10002677; scaffold38216 WUBlastX LINE_L1-Tx1 50933 51202 24 + . . scaffold38216 WUBlastX LINE_L1 51628 51726 20 + . . scaffold38216 WUBlastX LINE_L1 51628 51678 23 + . . scaffold38216 WUBlastX LINE_L1 52242 52358 32 + . . scaffold38216 WUBlastX LINE_DRE 52242 52382 29 + . . scaffold38216 WUBlastX LINE_L1 52523 52633 24 + . . scaffold38216 WUBlastX LINE_L1 52711 52851 32 + . . scaffold38220 WUBlastX LTR_DIRS 175 435 97 - . . scaffold38220 TRF Tandem_Repeat 4120 4184 50 + . . scaffold38220 TRF Tandem_Repeat 4126 4188 56 + . . scaffold38220 TRF Tandem_Repeat 4753 4798 92 + . . scaffold38220 TRF Tandem_Repeat 4796 4861 132 + . . scaffold38220 TRF Tandem_Repeat 8550 8601 77 + . . scaffold38220 WUBlastX RC_Helitron 16129 16890 249 - . . scaffold38220 TRF Tandem_Repeat 32651 32919 125 + . . scaffold38220 TRF Tandem_Repeat 36803 36849 58 + . . scaffold38220 TRF Tandem_Repeat 37750 37788 78 + . . scaffold38222 GLEAN promoter 1 615 1 + . ID=CGI_10002660; scaffold38222 GLEAN mRNA 616 1215 1 + . ID=CGI_10002660; scaffold38222 GLEAN mRNA 6031 22122 0.991843 - . ID=CGI_10002661; scaffold38222 GLEAN promoter 21571 22570 0.999415 + . ID=CGI_10002662; scaffold38222 GLEAN promoter 22123 23122 0.991843 - . ID=CGI_10002661; scaffold38222 GLEAN mRNA 22571 27143 0.999415 + . ID=CGI_10002662; scaffold38222 GLEAN mRNA 31854 34700 1 - . ID=CGI_10002663; scaffold38222 GLEAN promoter 34701 35700 1 - . ID=CGI_10002663; scaffold38222 GLEAN promoter 40120 41119 0.452122 + . ID=CGI_10002664; scaffold38222 GLEAN mRNA 41120 45792 0.452122 + . ID=CGI_10002664; scaffold38222 GLEAN mRNA 52378 52952 0.999938 - . ID=CGI_10002665; scaffold38222 GLEAN promoter 52953 53568 0.999938 - . ID=CGI_10002665; scaffold38256 WUBlastX LTR_Gypsy 3510 3791 27 + . . scaffold38256 WUBlastX LTR_Gypsy 3602 3961 72 + . . scaffold38256 WUBlastX LTR_Gypsy 3785 3946 82 + . . scaffold38256 WUBlastX LTR_Gypsy 4193 4510 23 + . . scaffold38256 WUBlastX LTR_Gypsy 4280 4534 26 + . . scaffold38256 WUBlastX LTR_Gypsy 4316 4519 30 + . . scaffold38256 WUBlastX LTR_Gypsy 4349 4510 39 + . . scaffold38256 TRF Tandem_Repeat 11780 11818 78 + . . scaffold38256 GLEAN promoter 45750 46749 1 + . ID=CGI_10002688; scaffold38256 GLEAN mRNA 46750 52983 1 + . ID=CGI_10002688; scaffold38264 GLEAN promoter 1 425 0.999949 + . ID=CGI_10002685; scaffold38264 GLEAN mRNA 426 4013 0.999949 + . ID=CGI_10002685; scaffold38264 GLEAN mRNA 9563 16151 0.997806 - . ID=CGI_10002686; scaffold38264 GLEAN promoter 16152 17151 0.997806 - . ID=CGI_10002686; scaffold38264 GLEAN promoter 25283 26282 0.906453 + . ID=CGI_10002687; scaffold38264 GLEAN mRNA 26283 51535 0.906453 + . ID=CGI_10002687; scaffold38270 GLEAN mRNA 41932 54236 0.999437 - . ID=CGI_10002694; scaffold38270 GLEAN promoter 54237 54321 0.999437 - . ID=CGI_10002694; scaffold38272 TRF Tandem_Repeat 6562 6609 53 + . . scaffold38272 GLEAN promoter 11040 12039 0.605388 + . ID=CGI_10002702; scaffold38272 GLEAN mRNA 12040 52169 0.605388 + . ID=CGI_10002702; scaffold38272 WUBlastX LTR_Gypsy 12145 12726 27 + . . scaffold38272 TRF Tandem_Repeat 13883 14786 1274 + . . scaffold38272 TRF Tandem_Repeat 27369 27420 68 + . . scaffold38272 TRF Tandem_Repeat 31161 31195 52 + . . scaffold38272 TRF Tandem_Repeat 31790 32427 767 + . . scaffold38272 WUBlastX LINE_L1-Tx1 37953 38063 38 + . . scaffold38272 WUBlastX LINE_L1-Tx1 37974 38510 119 + . . scaffold38272 WUBlastX LINE_L1-Tx1 38465 38749 98 + . . scaffold38272 WUBlastX LINE_L1-Tx1 38746 38937 28 + . . scaffold38272 WUBlastX LINE_L1-Tx1 39118 39321 24 + . . scaffold38272 WUBlastX LINE_L1 39386 39784 44 + . . scaffold38272 WUBlastX LINE_L1 39449 39856 89 + . . scaffold38272 WUBlastX LINE_L1-Tx1 39551 39787 104 + . . scaffold38272 TRF Tandem_Repeat 43342 43399 73 + . . scaffold38272 TRF Tandem_Repeat 43343 43399 55 + . . scaffold38272 WUBlastX LINE_L1-Tx1 48314 48436 26 + . . scaffold38272 WUBlastX LINE_L1 51317 51619 53 + . . scaffold38272 WUBlastX LINE_L1-Tx1 51377 51619 68 + . . scaffold38272 WUBlastX LINE_L1-Tx1 52597 52875 80 + . . scaffold38272 WUBlastX LINE_L1 52859 53044 58 + . . scaffold38272 WUBlastX LINE_L1-Tx1 52877 53002 98 + . . scaffold38274 GLEAN mRNA 79 639 0.99993 - . ID=CGI_10002703; scaffold38274 GLEAN promoter 640 1639 0.99993 - . ID=CGI_10002703; scaffold38274 TRF Tandem_Repeat 4512 4604 114 + . . scaffold38274 WUBlastX LINE_RTE-X 6801 7145 198 + . . scaffold38274 WUBlastX LINE_RTE-X 6834 7250 135 + . . scaffold38274 WUBlastX LINE_RTE-X 10963 11748 122 - . . scaffold38274 WUBlastX LINE_RTE-X 11080 11724 165 - . . scaffold38274 WUBlastX LINE_RTE-X 11763 12431 273 - . . scaffold38274 WUBlastX LINE_RTE-X 11895 12443 322 - . . scaffold38274 WUBlastX LINE_RTE-X 12415 12783 175 - . . scaffold38274 WUBlastX LINE_CR1-L2 12508 12957 49 - . . scaffold38274 GLEAN promoter 15103 16102 0.512325 + . ID=CGI_10002704; scaffold38274 WUBlastX LINE_L1 16082 16576 69 + . . scaffold38274 GLEAN mRNA 16103 49739 0.512325 + . ID=CGI_10002704; scaffold38274 WUBlastX LINE_RTE-X 16325 16621 50 + . . scaffold38274 TRF Tandem_Repeat 28939 28986 51 + . . scaffold38274 TRF Tandem_Repeat 29377 29446 131 + . . scaffold38274 TRF Tandem_Repeat 36309 36399 164 + . . scaffold38274 TRF Tandem_Repeat 39346 39412 62 + . . scaffold38274 TRF Tandem_Repeat 41789 41848 111 + . . scaffold38274 TRF Tandem_Repeat 48446 48503 82 + . . scaffold38274 TRF Tandem_Repeat 54251 54305 56 + . . scaffold38274 TRF Tandem_Repeat 54254 54309 62 + . . scaffold38276 GLEAN mRNA 1628 10340 0.999993 - . ID=CGI_10002695; scaffold38276 GLEAN promoter 10341 11340 0.999993 - . ID=CGI_10002695; scaffold38276 GLEAN promoter 17335 18334 1 + . ID=CGI_10002696; scaffold38276 GLEAN mRNA 18335 19768 1 + . ID=CGI_10002696; scaffold38276 GLEAN mRNA 21381 23622 0.981421 - . ID=CGI_10002697; scaffold38276 GLEAN promoter 23623 24622 0.981421 - . ID=CGI_10002697; scaffold38276 GLEAN promoter 23931 24930 1 + . ID=CGI_10002698; scaffold38276 GLEAN mRNA 24931 28297 1 + . ID=CGI_10002698; scaffold38276 GLEAN mRNA 29738 32077 1 - . ID=CGI_10002699; scaffold38276 GLEAN promoter 32078 33077 1 - . ID=CGI_10002699; scaffold38276 GLEAN promoter 32763 33762 0.999676 + . ID=CGI_10002700; scaffold38276 GLEAN mRNA 33763 36787 0.999676 + . ID=CGI_10002700; scaffold38276 GLEAN mRNA 47669 53426 1 - . ID=CGI_10002701; scaffold38276 GLEAN promoter 53427 54329 1 - . ID=CGI_10002701; scaffold38284 TRF Tandem_Repeat 10248 10480 430 + . . scaffold38284 WUBlastX LTR_Gypsy 26926 27726 99 - . . scaffold38284 WUBlastX LTR_Gypsy 27214 27726 114 - . . scaffold38284 WUBlastX LTR_Gypsy 27635 28168 125 - . . scaffold38284 WUBlastX LTR_Gypsy 27758 28165 388 - . . scaffold38284 WUBlastX LTR_Gypsy 27767 29221 325 - . . scaffold38284 WUBlastX LTR_Gypsy 28577 29302 347 - . . scaffold38284 WUBlastX LTR_Gypsy 28733 29302 409 - . . scaffold38284 WUBlastX LTR_Gypsy 29299 29919 525 - . . scaffold38284 WUBlastX LTR_Gypsy 29852 30181 166 - . . scaffold38284 WUBlastX LTR_Gypsy 30180 30356 31 - . . scaffold38284 WUBlastX LTR_Gypsy 30234 30752 48 - . . scaffold38284 WUBlastX LTR_Gypsy 30676 30975 36 - . . scaffold38284 WUBlastX LTR_Gypsy 30811 30975 94 - . . scaffold38284 WUBlastX LTR_Gypsy 30913 31065 31 - . . scaffold38284 WUBlastX LTR_Gypsy 31338 32048 63 - . . scaffold38284 WUBlastX LTR_Gypsy 31452 33254 797 - . . scaffold38284 WUBlastX LTR_Gypsy 33331 33843 270 - . . scaffold38284 WUBlastX LTR_Gypsy 33463 33918 55 - . . scaffold38284 WUBlastX LTR_Gypsy-Cigr 33908 34147 25 - . . scaffold38284 WUBlastX LTR_Gypsy 34025 34255 58 - . . scaffold38284 WUBlastX LTR_Gypsy 34178 34747 174 - . . scaffold38284 WUBlastX LTR_Gypsy 34337 34711 215 - . . scaffold38284 WUBlastX LTR_Gypsy 34735 34956 105 - . . scaffold38284 WUBlastX LTR_Gypsy 37345 37974 109 - . . scaffold38284 WUBlastX LTR_Gypsy 37495 37980 134 - . . scaffold38284 WUBlastX LTR_Gypsy 37591 38439 182 - . . scaffold38284 WUBlastX LTR_Gypsy 37612 38214 202 - . . scaffold38284 WUBlastX LTR_Gypsy 37612 38121 245 - . . scaffold38284 WUBlastX LTR_Gypsy 38116 38547 42 - . . scaffold38284 WUBlastX LTR_Gypsy 38569 38994 32 - . . scaffold38284 WUBlastX LTR_Gypsy 38722 40053 242 - . . scaffold38284 WUBlastX LTR_Gypsy 38944 40110 271 - . . scaffold38284 WUBlastX LTR_Gypsy 41805 42110 39 - . . scaffold38284 WUBlastX LINE_L1 45155 45217 26 - . . scaffold38284 WUBlastX LINE_L1-Tx1 45222 45422 31 - . . scaffold38284 WUBlastX LINE_L1-Tx1 45933 46298 22 - . . scaffold38284 WUBlastX LINE_L1-Tx1 45936 46220 62 - . . scaffold38284 WUBlastX LINE_L1-Tx1 45993 46241 75 - . . scaffold38284 WUBlastX LINE_L1-Tx1 46494 46634 41 - . . scaffold38284 WUBlastX LINE_L1-Tx1 46588 46824 92 - . . scaffold38284 WUBlastX LINE_L1-Tx1 46645 46887 43 - . . scaffold38284 TRF Tandem_Repeat 47167 47219 70 + . . scaffold38284 TRF Tandem_Repeat 48320 48347 56 + . . scaffold38290 TRF Tandem_Repeat 310 336 54 + . . scaffold38290 TRF Tandem_Repeat 691 754 87 + . . scaffold38290 TRF Tandem_Repeat 691 762 62 + . . scaffold38290 WUBlastX LTR_Copia 2259 6356 388 + . . scaffold38290 WUBlastX LTR_Copia 2856 4526 1192 + . . scaffold38290 WUBlastX LTR_Copia 4695 6407 904 + . . scaffold38290 WUBlastX LTR_Copia 4965 6407 973 + . . scaffold38290 WUBlastX DNA_IS4EU 8799 8963 40 + . . scaffold38290 WUBlastX DNA_IS4EU 9654 10673 468 + . . scaffold38290 TRF Tandem_Repeat 12449 12505 60 + . . scaffold38290 TRF Tandem_Repeat 12450 12505 82 + . . scaffold38290 WUBlastX DNA_IS4EU 12606 13346 218 - . . scaffold38290 WUBlastX DNA_IS4EU 12621 13703 131 - . . scaffold38290 WUBlastX DNA_Kolobok-IS4 14286 14804 89 - . . scaffold38290 WUBlastX LINE_L2 26641 27420 553 - . . scaffold38290 WUBlastX LINE_CR1 26746 27552 72 - . . scaffold38290 TRF Tandem_Repeat 29013 29109 122 + . . scaffold38290 TRF Tandem_Repeat 29261 29326 132 + . . scaffold38290 TRF Tandem_Repeat 34464 34503 80 + . . scaffold38290 GLEAN promoter 36123 37122 0.999949 + . ID=CGI_10002705; scaffold38290 GLEAN mRNA 37123 47010 0.999949 + . ID=CGI_10002705; scaffold38290 TRF Tandem_Repeat 37450 37474 50 + . . scaffold38290 TRF Tandem_Repeat 43097 43134 76 + . . scaffold38290 TRF Tandem_Repeat 50467 50495 58 + . . scaffold38292 TRF Tandem_Repeat 15 213 256 + . . scaffold38292 GLEAN promoter 1377 2376 0.531558 + . ID=CGI_10002690; scaffold38292 GLEAN mRNA 2377 9479 0.531558 + . ID=CGI_10002690; scaffold38292 TRF Tandem_Repeat 4151 4216 132 + . . scaffold38292 TRF Tandem_Repeat 4411 4452 66 + . . scaffold38292 TRF Tandem_Repeat 11110 11160 102 + . . scaffold38292 TRF Tandem_Repeat 12251 13435 1512 + . . scaffold38292 TRF Tandem_Repeat 13602 13655 67 + . . scaffold38292 TRF Tandem_Repeat 13605 13650 67 + . . scaffold38292 WUBlastX LTR_Gypsy 13840 16692 2453 + . . scaffold38292 WUBlastX LTR_Gypsy 16688 17242 259 + . . scaffold38292 WUBlastX LTR_Gypsy 16691 17137 357 + . . scaffold38292 WUBlastX LTR_Gypsy 17145 17531 84 + . . scaffold38292 WUBlastX LTR_Gypsy 17493 17549 34 + . . scaffold38292 TRF Tandem_Repeat 21920 21975 71 + . . scaffold38292 TRF Tandem_Repeat 21924 21978 65 + . . scaffold38292 TRF Tandem_Repeat 23756 23880 64 + . . scaffold38292 GLEAN mRNA 26899 37380 0.771739 - . ID=CGI_10002691; scaffold38292 WUBlastX LTR_Ngaro 34026 34916 222 - . . scaffold38292 WUBlastX LTR_Ngaro 34155 34910 265 - . . scaffold38292 WUBlastX LTR_Ngaro 34942 35952 521 - . . scaffold38292 WUBlastX LTR_Ngaro 35916 36203 171 - . . scaffold38292 WUBlastX LTR_Ngaro 36200 36442 43 - . . scaffold38292 GLEAN promoter 37381 38380 0.771739 - . ID=CGI_10002691; scaffold38292 TRF Tandem_Repeat 43717 43785 129 + . . scaffold38292 TRF Tandem_Repeat 44782 44830 98 + . . scaffold38292 GLEAN promoter 44996 45995 0.696819 + . ID=CGI_10002692; scaffold38292 GLEAN mRNA 45996 48404 0.696819 + . ID=CGI_10002692; scaffold38292 WUBlastX LTR_Gypsy 46272 46946 72 + . . scaffold38292 WUBlastX LTR_Gypsy-Cigr 46410 46913 190 + . . scaffold38292 WUBlastX LTR_Gypsy 46431 47681 118 + . . scaffold38292 WUBlastX LTR_Gypsy-Cigr 46434 47066 170 + . . scaffold38292 WUBlastX LTR_Gypsy 46449 47204 130 + . . scaffold38292 WUBlastX LTR_Gypsy 47397 47750 88 + . . scaffold38292 GLEAN promoter 49747 50746 0.527841 + . ID=CGI_10002693; scaffold38292 GLEAN mRNA 50747 53905 0.527841 + . ID=CGI_10002693; scaffold38298 TRF Tandem_Repeat 3404 3437 50 + . . scaffold38298 TRF Tandem_Repeat 6210 6273 67 + . . scaffold38298 WUBlastX LINE_RTE-X 7036 7605 174 - . . scaffold38298 TRF Tandem_Repeat 11462 11555 107 + . . scaffold38298 TRF Tandem_Repeat 11604 11702 182 + . . scaffold38298 TRF Tandem_Repeat 12183 12230 96 + . . scaffold38298 TRF Tandem_Repeat 13571 13624 99 + . . scaffold38298 TRF Tandem_Repeat 31900 32123 387 + . . scaffold38298 TRF Tandem_Repeat 31928 32090 110 + . . scaffold38298 TRF Tandem_Repeat 31944 32124 149 + . . scaffold38298 TRF Tandem_Repeat 32515 32561 94 + . . scaffold38298 TRF Tandem_Repeat 34113 34248 62 + . . scaffold38298 TRF Tandem_Repeat 34208 34427 120 + . . scaffold38298 TRF Tandem_Repeat 39895 39946 95 + . . scaffold38298 GLEAN promoter 40292 41291 0.99993 + . ID=CGI_10002689; scaffold38298 GLEAN mRNA 41292 50044 0.99993 + . ID=CGI_10002689; scaffold38298 TRF Tandem_Repeat 48226 48296 133 + . . scaffold38298 TRF Tandem_Repeat 48963 49133 102 + . . scaffold383 GLEAN mRNA 5629 33981 0.331837 - . ID=CGI_10023515; scaffold383 TRF Tandem_Repeat 6818 6873 112 + . . scaffold383 TRF Tandem_Repeat 12233 12281 98 + . . scaffold383 TRF Tandem_Repeat 18788 18845 75 + . . scaffold383 TRF Tandem_Repeat 19896 19942 94 + . . scaffold383 TRF Tandem_Repeat 20869 21171 563 + . . scaffold383 GLEAN promoter 33982 34981 0.331837 - . ID=CGI_10023515; scaffold383 TRF Tandem_Repeat 39168 39218 102 + . . scaffold383 GLEAN promoter 42504 43503 0.428135 + . ID=CGI_10023516; scaffold383 GLEAN mRNA 43504 45237 0.428135 + . ID=CGI_10023516; scaffold383 WUBlastX DNA_En-Spm 51977 52183 45 + . . scaffold383 WUBlastX DNA_En-Spm 52170 52313 40 + . . scaffold383 WUBlastX DNA_En-Spm 53055 53171 25 + . . scaffold383 WUBlastX DNA_En-Spm 53128 53721 162 + . . scaffold383 TRF Tandem_Repeat 60124 60173 61 + . . scaffold383 WUBlastX LINE_Penelope 62558 63046 285 - . . scaffold383 TRF Tandem_Repeat 66836 66871 72 + . . scaffold383 WUBlastX LTR_Pao 72220 73977 1295 - . . scaffold383 WUBlastX LTR_Pao 73843 74016 61 - . . scaffold383 WUBlastX LTR_Gypsy 76356 77450 116 - . . scaffold383 WUBlastX LTR_Gypsy 76530 77459 702 - . . scaffold383 WUBlastX LTR_Gypsy 77459 78205 563 - . . scaffold383 WUBlastX LTR_Gypsy 78178 78570 409 - . . scaffold383 WUBlastX LTR_Gypsy 78558 79052 566 - . . scaffold383 WUBlastX LTR_Gypsy 78558 79157 318 - . . scaffold383 WUBlastX LTR_Gypsy 79327 79353 20 - . . scaffold383 GLEAN promoter 79657 80656 0.999585 + . ID=CGI_10023517; scaffold383 GLEAN mRNA 80657 86059 0.999585 + . ID=CGI_10023517; scaffold383 TRF Tandem_Repeat 84891 84966 89 + . . scaffold383 TRF Tandem_Repeat 84892 84967 98 + . . scaffold383 TRF Tandem_Repeat 84900 84967 64 + . . scaffold383 GLEAN mRNA 92452 96891 0.999938 - . ID=CGI_10023518; scaffold383 TRF Tandem_Repeat 94854 95201 597 + . . scaffold383 GLEAN promoter 96892 97891 0.999938 - . ID=CGI_10023518; scaffold383 GLEAN promoter 98976 99975 0.995554 + . ID=CGI_10023519; scaffold383 GLEAN mRNA 99976 117092 0.995554 + . ID=CGI_10023519; scaffold383 GLEAN mRNA 118318 119545 0.999661 - . ID=CGI_10023520; scaffold383 GLEAN promoter 119043 120042 0.999026 + . ID=CGI_10023521; scaffold383 GLEAN promoter 119546 120545 0.999661 - . ID=CGI_10023520; scaffold383 GLEAN mRNA 120043 140716 0.999026 + . ID=CGI_10023521; scaffold383 TRF Tandem_Repeat 131158 131199 84 + . . scaffold383 TRF Tandem_Repeat 132847 132878 64 + . . scaffold383 GLEAN promoter 148888 149887 0.999391 + . ID=CGI_10023522; scaffold383 GLEAN mRNA 149888 165856 0.999391 + . ID=CGI_10023522; scaffold383 TRF Tandem_Repeat 160298 160346 98 + . . scaffold383 GLEAN mRNA 173482 177321 1 - . ID=CGI_10023523; scaffold383 GLEAN promoter 175588 176587 0.990193 + . ID=CGI_10023524; scaffold383 GLEAN mRNA 176588 193389 0.990193 + . ID=CGI_10023524; scaffold383 GLEAN promoter 177322 178321 1 - . ID=CGI_10023523; scaffold383 TRF Tandem_Repeat 177497 177559 90 + . . scaffold383 TRF Tandem_Repeat 180221 180324 95 + . . scaffold383 TRF Tandem_Repeat 180222 180326 120 + . . scaffold383 TRF Tandem_Repeat 181543 181613 56 + . . scaffold383 TRF Tandem_Repeat 182362 182409 96 + . . scaffold383 GLEAN mRNA 196644 197048 1 - . ID=CGI_10023525; scaffold383 GLEAN promoter 197049 198048 1 - . ID=CGI_10023525; scaffold383 TRF Tandem_Repeat 197252 197318 134 + . . scaffold383 TRF Tandem_Repeat 208911 209136 175 + . . scaffold383 GLEAN promoter 211575 212574 0.747094 + . ID=CGI_10023526; scaffold383 GLEAN mRNA 212575 226884 0.747094 + . ID=CGI_10023526; scaffold383 GLEAN mRNA 230076 237104 1 - . ID=CGI_10023527; scaffold383 GLEAN promoter 237105 238104 1 - . ID=CGI_10023527; scaffold383 GLEAN promoter 239555 240554 0.549964 + . ID=CGI_10023528; scaffold383 GLEAN promoter 239743 240742 0.916141 + . ID=CGI_10023529; scaffold383 GLEAN mRNA 240555 240722 0.549964 + . ID=CGI_10023528; scaffold383 GLEAN mRNA 240743 245977 0.916141 + . ID=CGI_10023529; scaffold383 TRF Tandem_Repeat 250096 250126 55 + . . scaffold383 GLEAN promoter 251478 252477 1 + . ID=CGI_10023530; scaffold383 TRF Tandem_Repeat 252087 252125 71 + . . scaffold383 GLEAN mRNA 252478 253513 1 + . ID=CGI_10023530; scaffold383 GLEAN promoter 260094 261093 0.999759 + . ID=CGI_10023531; scaffold383 GLEAN mRNA 261094 261657 0.999759 + . ID=CGI_10023531; scaffold383 TRF Tandem_Repeat 265299 265348 100 + . . scaffold383 TRF Tandem_Repeat 267222 267272 102 + . . scaffold383 TRF Tandem_Repeat 273508 273547 80 + . . scaffold383 TRF Tandem_Repeat 278494 278534 82 + . . scaffold383 TRF Tandem_Repeat 281545 281572 56 + . . scaffold383 GLEAN promoter 282480 283479 0.998246 + . ID=CGI_10023532; scaffold383 GLEAN mRNA 283480 286092 0.998246 + . ID=CGI_10023532; scaffold383 GLEAN promoter 293387 294386 0.994673 + . ID=CGI_10023533; scaffold383 WUBlastX DNA_TcMar-Marin 293605 293946 102 - . . scaffold383 GLEAN mRNA 294387 309869 0.994673 + . ID=CGI_10023533; scaffold383 TRF Tandem_Repeat 296191 296246 112 + . . scaffold383 TRF Tandem_Repeat 297398 297443 92 + . . scaffold383 TRF Tandem_Repeat 308444 309223 1104 + . . scaffold383 TRF Tandem_Repeat 308447 309223 1072 + . . scaffold383 GLEAN mRNA 314813 318357 0.449006 - . ID=CGI_10023534; scaffold383 GLEAN promoter 318358 319357 0.449006 - . ID=CGI_10023534; scaffold383 GLEAN promoter 319521 320520 1 + . ID=CGI_10023535; scaffold383 GLEAN mRNA 320521 330035 1 + . ID=CGI_10023535; scaffold383 TRF Tandem_Repeat 321175 321863 1130 + . . scaffold383 WUBlastX LINE_L1-Tx1 336341 338959 1079 - . . scaffold383 GLEAN promoter 339990 340989 0.999244 + . ID=CGI_10023536; scaffold383 GLEAN mRNA 340990 343919 0.999244 + . ID=CGI_10023536; scaffold383 GLEAN promoter 345147 346146 0.999949 + . ID=CGI_10023537; scaffold383 GLEAN mRNA 346147 369692 0.999949 + . ID=CGI_10023537; scaffold383 GLEAN mRNA 374037 381272 0.995588 - . ID=CGI_10023538; scaffold383 TRF Tandem_Repeat 381016 381059 88 + . . scaffold383 GLEAN promoter 381273 382272 0.995588 - . ID=CGI_10023538; scaffold383 TRF Tandem_Repeat 382770 382879 220 + . . scaffold383 TRF Tandem_Repeat 387837 387884 51 + . . scaffold383 TRF Tandem_Repeat 387842 387884 50 + . . scaffold383 GLEAN promoter 395385 396384 0.941169 + . ID=CGI_10023539; scaffold383 GLEAN mRNA 396385 397728 0.941169 + . ID=CGI_10023539; scaffold383 TRF Tandem_Repeat 399249 399287 51 + . . scaffold383 TRF Tandem_Repeat 399463 401151 1997 + . . scaffold383 TRF Tandem_Repeat 399463 401151 1945 + . . scaffold383 GLEAN promoter 401785 402784 0.999996 + . ID=CGI_10023540; scaffold383 GLEAN mRNA 402785 403114 0.999996 + . ID=CGI_10023540; scaffold383 WUBlastX LINE_L1 408186 408677 57 + . . scaffold383 WUBlastX LINE_L2 408279 408653 82 + . . scaffold383 WUBlastX LINE_L2 408360 408653 89 + . . scaffold383 WUBlastX LINE_L2 409387 409791 23 + . . scaffold383 WUBlastX LINE_CR1-L2 409477 409791 54 + . . scaffold383 TRF Tandem_Repeat 411016 411050 70 + . . scaffold383 WUBlastX LINE_RTE-X 422144 422266 41 - . . scaffold383 WUBlastX LINE_RTE-X 422183 422266 62 - . . scaffold383 WUBlastX LINE_RTE-X 422268 422336 31 - . . scaffold383 WUBlastX LINE_RTE-X 423414 423974 36 + . . scaffold383 WUBlastX LINE_RTE-X 423501 423992 87 + . . scaffold383 WUBlastX LINE_RTE-X 424513 424575 27 + . . scaffold383 WUBlastX LINE_RTE-X 424525 424605 30 + . . scaffold383 WUBlastX LINE_RTE-X 424525 424572 41 + . . scaffold383 WUBlastX LINE_RTE-X 424579 424833 24 + . . scaffold383 WUBlastX LINE_RTE-X 424663 424869 52 + . . scaffold383 WUBlastX LINE_RTE-X 424787 424948 43 + . . scaffold383 TRF Tandem_Repeat 426597 426634 76 + . . scaffold383 TRF Tandem_Repeat 426739 426785 94 + . . scaffold383 WUBlastX RC_Helitron 438130 438606 358 - . . scaffold383 WUBlastX RC_Helitron 438639 442196 2140 - . . scaffold383 WUBlastX RC_Helitron 441390 442379 263 - . . scaffold383 GLEAN promoter 451145 452144 0.937847 + . ID=CGI_10023541; scaffold383 GLEAN mRNA 452145 454034 0.937847 + . ID=CGI_10023541; scaffold383 GLEAN promoter 457163 458162 0.84036 + . ID=CGI_10023542; scaffold383 GLEAN mRNA 458163 458890 0.84036 + . ID=CGI_10023542; scaffold383 TRF Tandem_Repeat 459230 459259 60 + . . scaffold383 TRF Tandem_Repeat 459259 459318 120 + . . scaffold383 TRF Tandem_Repeat 463733 464060 181 + . . scaffold383 WUBlastX LTR_Ngaro 464545 464919 94 + . . scaffold383 WUBlastX LTR_Ngaro 464919 465077 25 + . . scaffold383 WUBlastX LTR_Ngaro 465186 465404 107 + . . scaffold383 WUBlastX LTR_Ngaro 465498 465773 54 + . . scaffold383 WUBlastX LTR_Ngaro 465606 465773 112 + . . scaffold383 WUBlastX LTR_Ngaro 465770 466000 83 + . . scaffold383 WUBlastX LTR_Ngaro 466000 466071 48 + . . scaffold383 WUBlastX LTR_Ngaro 466067 466354 239 + . . scaffold383 WUBlastX LTR_Ngaro 466372 466497 46 + . . scaffold383 WUBlastX LTR_Ngaro 466436 466945 88 + . . scaffold383 WUBlastX LTR_Ngaro 466553 466945 136 + . . scaffold383 WUBlastX LTR_Ngaro 466927 467388 185 + . . scaffold383 GLEAN mRNA 473944 474473 0.999976 - . ID=CGI_10023543; scaffold383 GLEAN promoter 474474 475473 0.999976 - . ID=CGI_10023543; scaffold383 TRF Tandem_Repeat 476152 477129 1264 + . . scaffold383 TRF Tandem_Repeat 479103 479193 132 + . . scaffold383 TRF Tandem_Repeat 483976 484037 81 + . . scaffold383 GLEAN promoter 492794 493793 0.544659 + . ID=CGI_10023544; scaffold383 GLEAN mRNA 493794 495770 0.544659 + . ID=CGI_10023544; scaffold383 TRF Tandem_Repeat 509406 509434 58 + . . scaffold383 TRF Tandem_Repeat 510158 510210 106 + . . scaffold383 GLEAN mRNA 510699 516348 0.999797 - . ID=CGI_10023546; scaffold383 TRF Tandem_Repeat 511852 512040 179 + . . scaffold383 GLEAN promoter 516349 517348 0.999797 - . ID=CGI_10023546; scaffold383 TRF Tandem_Repeat 524580 524605 52 + . . scaffold383 TRF Tandem_Repeat 538414 538449 54 + . . scaffold383 TRF Tandem_Repeat 546461 546537 154 + . . scaffold383 GLEAN promoter 554014 555013 0.499838 + . ID=CGI_10023547; scaffold383 TRF Tandem_Repeat 554841 554886 92 + . . scaffold383 GLEAN mRNA 555014 560678 0.499838 + . ID=CGI_10023547; scaffold383 TRF Tandem_Repeat 558097 558158 124 + . . scaffold383 GLEAN mRNA 560393 576694 0.790008 - . ID=CGI_10023548; scaffold383 TRF Tandem_Repeat 570215 570287 137 + . . scaffold383 TRF Tandem_Repeat 575223 575291 129 + . . scaffold383 GLEAN promoter 576695 577694 0.790008 - . ID=CGI_10023548; scaffold383 GLEAN mRNA 586194 586559 0.580476 - . ID=CGI_10023549; scaffold383 GLEAN promoter 586560 587559 0.580476 - . ID=CGI_10023549; scaffold383 TRF Tandem_Repeat 609988 610466 352 + . . scaffold383 GLEAN promoter 631664 632663 0.42054 + . ID=CGI_10023550; scaffold383 GLEAN mRNA 632664 652424 0.42054 + . ID=CGI_10023550; scaffold383 TRF Tandem_Repeat 641121 641192 135 + . . scaffold383 TRF Tandem_Repeat 641449 641519 133 + . . scaffold383 TRF Tandem_Repeat 652757 652789 57 + . . scaffold383 TRF Tandem_Repeat 658652 658699 60 + . . scaffold383 TRF Tandem_Repeat 658652 658696 81 + . . scaffold383 GLEAN promoter 662505 663504 0.989018 + . ID=CGI_10023551; scaffold383 GLEAN mRNA 663505 679636 0.989018 + . ID=CGI_10023551; scaffold383 TRF Tandem_Repeat 686298 686365 136 + . . scaffold383 TRF Tandem_Repeat 689978 690016 71 + . . scaffold383 TRF Tandem_Repeat 690481 690601 215 + . . scaffold383 GLEAN promoter 697026 698025 0.479698 + . ID=CGI_10023552; scaffold383 GLEAN mRNA 698026 735622 0.479698 + . ID=CGI_10023552; scaffold383 TRF Tandem_Repeat 701100 701136 65 + . . scaffold383 TRF Tandem_Repeat 720518 720566 98 + . . scaffold383 TRF Tandem_Repeat 724734 724776 86 + . . scaffold383 TRF Tandem_Repeat 728612 728687 93 + . . scaffold383 TRF Tandem_Repeat 735955 735994 80 + . . scaffold383 WUBlastX LINE_RTE-X 737132 737248 59 + . . scaffold383 WUBlastX LINE_RTE-BovB 737233 737682 37 + . . scaffold383 WUBlastX LINE_RTE-X 737251 737565 117 + . . scaffold383 WUBlastX LINE_RTE-X 737648 737941 156 + . . scaffold383 WUBlastX LINE_L2 737657 738004 31 + . . scaffold383 WUBlastX LINE_RTE-X 738927 739658 129 + . . scaffold383 TRF Tandem_Repeat 739732 739781 100 + . . scaffold383 WUBlastX LTR_Gypsy 741136 741975 90 - . . scaffold383 WUBlastX LTR_Gypsy 741313 741882 109 - . . scaffold383 WUBlastX LTR_Gypsy 741403 741882 114 - . . scaffold383 GLEAN promoter 741434 742433 1 + . ID=CGI_10023553; scaffold383 WUBlastX LTR_Gypsy 741728 742252 134 - . . scaffold383 WUBlastX LTR_Gypsy 741818 742252 163 - . . scaffold383 WUBlastX LTR_Gypsy 741875 742381 110 - . . scaffold383 WUBlastX LTR_Gypsy 741884 742267 176 - . . scaffold383 GLEAN mRNA 742434 758358 1 + . ID=CGI_10023553; scaffold383 TRF Tandem_Repeat 742975 743841 1043 + . . scaffold383 WUBlastX DNA_Sola 754251 755858 232 + . . scaffold383 WUBlastX DNA_Sola 754623 756008 247 + . . scaffold383 WUBlastX DNA_Sola 754683 755807 254 + . . scaffold383 TRF Tandem_Repeat 756309 756455 68 + . . scaffold383 TRF Tandem_Repeat 756314 756555 177 + . . scaffold383 TRF Tandem_Repeat 756321 756578 101 + . . scaffold383 TRF Tandem_Repeat 756450 756555 88 + . . scaffold383 TRF Tandem_Repeat 756504 756578 66 + . . scaffold383 WUBlastX LINE_RTE-BovB 760158 760418 96 + . . scaffold383 WUBlastX LINE_RTE-BovB 760424 760699 127 + . . scaffold383 TRF Tandem_Repeat 766634 766660 54 + . . scaffold383 WUBlastX DNA_Sola 772693 772881 43 - . . scaffold383 WUBlastX DNA_TcMar-Marin 773275 773640 101 + . . scaffold383 WUBlastX DNA_TcMar-Marin 773332 773640 120 + . . scaffold383 TRF Tandem_Repeat 774974 775006 66 + . . scaffold383 WUBlastX DNA_TcMar-Marin 792532 792933 55 + . . scaffold383 WUBlastX DNA_TcMar-Marin 792535 792873 143 + . . scaffold383 WUBlastX DNA_TcMar-Marin 793120 793389 88 + . . scaffold383 WUBlastX DNA_TcMar-Marin 793120 793338 107 + . . scaffold383 WUBlastX DNA_TcMar-Marin 793334 793480 27 + . . scaffold383 TRF Tandem_Repeat 810754 810799 67 + . . scaffold383 TRF Tandem_Repeat 811908 812023 82 + . . scaffold383 TRF Tandem_Repeat 823971 823999 58 + . . scaffold383 WUBlastX LINE_RTE-X 824347 824517 81 - . . scaffold383 WUBlastX LINE_RTE-X 824509 824718 129 - . . scaffold383 WUBlastX LINE_RTE-X 824723 824866 44 - . . scaffold383 WUBlastX LINE_RTE-X 824732 824905 29 - . . scaffold383 TRF Tandem_Repeat 824967 824997 62 + . . scaffold383 WUBlastX LINE_RTE-X 825379 825522 44 - . . scaffold383 WUBlastX LINE_RTE-X 825388 825561 29 - . . scaffold383 TRF Tandem_Repeat 825623 825653 62 + . . scaffold383 GLEAN promoter 844063 845062 0.999947 + . ID=CGI_10023554; scaffold383 GLEAN mRNA 845063 853636 0.999947 + . ID=CGI_10023554; scaffold38302 WUBlastX LINE_L1-Tx1 22096 22263 120 - . . scaffold38302 TRF Tandem_Repeat 28351 28410 120 + . . scaffold38302 TRF Tandem_Repeat 29318 29368 102 + . . scaffold38302 TRF Tandem_Repeat 30816 30869 90 + . . scaffold38302 WUBlastX LINE_Penelope 37195 37752 25 + . . scaffold38302 WUBlastX LINE_L1-Tx1 44871 45422 119 - . . scaffold38302 GLEAN promoter 48771 49770 0.636135 + . ID=CGI_10002721; scaffold38302 GLEAN mRNA 49771 50139 0.636135 + . ID=CGI_10002721; scaffold38302 GLEAN promoter 52413 53412 0.777767 + . ID=CGI_10002722; scaffold38302 TRF Tandem_Repeat 53306 53354 98 + . . scaffold38302 GLEAN mRNA 53413 54042 0.777767 + . ID=CGI_10002722; scaffold38306 GLEAN mRNA 1247 1885 0.999983 - . ID=CGI_10002710; scaffold38306 GLEAN promoter 1886 2885 0.999983 - . ID=CGI_10002710; scaffold38306 GLEAN mRNA 6272 12349 0.99842 - . ID=CGI_10002711; scaffold38306 WUBlastX LINE_L1 6312 6377 25 + . . scaffold38306 WUBlastX LINE_L1 6325 6369 31 + . . scaffold38306 WUBlastX LINE_L1 7154 7537 62 + . . scaffold38306 WUBlastX LINE_L1-Tx1 7256 7525 192 + . . scaffold38306 WUBlastX LINE_L1-Tx1 7256 7615 86 + . . scaffold38306 WUBlastX DNA_Harbinger 8854 9009 100 - . . scaffold38306 WUBlastX DNA_Harbinger 10233 10745 89 - . . scaffold38306 GLEAN promoter 12350 13349 0.99842 - . ID=CGI_10002711; scaffold38306 GLEAN promoter 16582 17581 0.646817 + . ID=CGI_10002712; scaffold38306 GLEAN mRNA 17582 21672 0.646817 + . ID=CGI_10002712; scaffold38306 GLEAN mRNA 26664 38403 0.690372 - . ID=CGI_10002713; scaffold38306 GLEAN promoter 38404 39403 0.690372 - . ID=CGI_10002713; scaffold38306 GLEAN promoter 40043 41042 0.996569 + . ID=CGI_10002714; scaffold38306 GLEAN mRNA 41043 52785 0.996569 + . ID=CGI_10002714; scaffold38306 TRF Tandem_Repeat 47094 47124 53 + . . scaffold38310 WUBlastX LINE_RTE-X 17445 17741 43 + . . scaffold38310 WUBlastX LINE_RTE-X 17514 17777 66 + . . scaffold38310 WUBlastX LINE_RTE-X 17529 17861 60 + . . scaffold38310 TRF Tandem_Repeat 19672 19738 80 + . . scaffold38310 TRF Tandem_Repeat 25529 25575 85 + . . scaffold38310 TRF Tandem_Repeat 26096 26162 80 + . . scaffold38310 TRF Tandem_Repeat 41900 41931 64 + . . scaffold38310 WUBlastX DNA_Harbinger 44243 44680 147 + . . scaffold38310 WUBlastX DNA_hAT-hATw 44828 46222 588 - . . scaffold38310 TRF Tandem_Repeat 50228 50405 187 + . . scaffold38310 TRF Tandem_Repeat 53882 54079 185 + . . scaffold38310 TRF Tandem_Repeat 53884 54077 166 + . . scaffold38348 TRF Tandem_Repeat 3257 3289 57 + . . scaffold38348 WUBlastX DNA_PiggyBac 3624 5258 566 - . . scaffold38348 GLEAN mRNA 7189 8454 0.836235 - . ID=CGI_10002706; scaffold38348 GLEAN promoter 8455 9454 0.836235 - . ID=CGI_10002706; scaffold38348 GLEAN mRNA 8462 37605 0.999676 - . ID=CGI_10002707; scaffold38348 TRF Tandem_Repeat 13055 13097 68 + . . scaffold38348 TRF Tandem_Repeat 25592 25664 119 + . . scaffold38348 TRF Tandem_Repeat 25744 25795 77 + . . scaffold38348 GLEAN promoter 32031 33030 0.999415 + . ID=CGI_10002708; scaffold38348 GLEAN mRNA 33031 46191 0.999415 + . ID=CGI_10002708; scaffold38348 GLEAN promoter 37606 38605 0.999676 - . ID=CGI_10002707; scaffold38348 TRF Tandem_Repeat 44515 44631 139 + . . scaffold38348 TRF Tandem_Repeat 44869 45240 564 + . . scaffold38348 GLEAN promoter 49349 50348 1 + . ID=CGI_10002709; scaffold38348 GLEAN mRNA 50349 53502 1 + . ID=CGI_10002709; scaffold38354 TRF Tandem_Repeat 1 35 70 + . . scaffold38354 TRF Tandem_Repeat 1986 2087 98 + . . scaffold38354 WUBlastX LTR_Gypsy 3358 3576 78 - . . scaffold38354 WUBlastX LTR_Gypsy 3418 3600 97 - . . scaffold38354 WUBlastX LTR_Gypsy 3525 3809 64 - . . scaffold38354 WUBlastX LTR_Gypsy 3760 3903 49 + . . scaffold38354 WUBlastX LTR_Gypsy 3833 4141 67 + . . scaffold38354 WUBlastX LTR_Gypsy 3899 4276 30 + . . scaffold38354 WUBlastX LTR_Gypsy 3899 4216 80 + . . scaffold38354 WUBlastX LTR_Gypsy 3899 4141 108 + . . scaffold38354 WUBlastX LTR_Gypsy 4449 4763 65 + . . scaffold38354 WUBlastX LTR_Gypsy 4571 4714 69 + . . scaffold38354 TRF Tandem_Repeat 10758 10813 85 + . . scaffold38354 TRF Tandem_Repeat 13356 13644 238 + . . scaffold38354 GLEAN mRNA 15014 31463 0.931314 - . ID=CGI_10002723; scaffold38354 GLEAN promoter 15578 16577 1 + . ID=CGI_10002724; scaffold38354 GLEAN mRNA 16578 29918 1 + . ID=CGI_10002724; scaffold38354 TRF Tandem_Repeat 24939 25027 106 + . . scaffold38354 TRF Tandem_Repeat 25054 25191 107 + . . scaffold38354 GLEAN promoter 31464 32463 0.931314 - . ID=CGI_10002723; scaffold38354 GLEAN mRNA 31746 32589 0.815732 - . ID=CGI_10002725; scaffold38354 GLEAN promoter 32395 33394 1 + . ID=CGI_10002726; scaffold38354 GLEAN promoter 32590 33589 0.815732 - . ID=CGI_10002725; scaffold38354 GLEAN mRNA 33395 39615 1 + . ID=CGI_10002726; scaffold38354 TRF Tandem_Repeat 37479 37551 58 + . . scaffold38354 GLEAN mRNA 40632 41686 0.758938 - . ID=CGI_10002727; scaffold38354 GLEAN promoter 41687 42686 0.758938 - . ID=CGI_10002727; scaffold38354 GLEAN mRNA 43202 53159 0.975835 - . ID=CGI_10002728; scaffold38354 GLEAN promoter 53160 54159 0.975835 - . ID=CGI_10002728; scaffold38360 WUBlastX LINE_Penelope 3748 4248 161 + . . scaffold38360 WUBlastX LINE_Penelope 4251 4595 50 + . . scaffold38360 WUBlastX LINE_Penelope 4320 4586 122 + . . scaffold38360 TRF Tandem_Repeat 11715 11881 198 + . . scaffold38360 WUBlastX LINE_Penelope 28673 29038 52 - . . scaffold38360 WUBlastX LTR_Ngaro 34570 35268 126 + . . scaffold38360 WUBlastX LTR_Ngaro 35335 35847 337 + . . scaffold38360 WUBlastX LTR_Ngaro 35838 36650 257 + . . scaffold38360 WUBlastX LTR_Ngaro 36650 36880 134 + . . scaffold38360 WUBlastX LTR_Ngaro 36854 37375 86 + . . scaffold38360 WUBlastX LTR_Ngaro 37273 37560 107 + . . scaffold38360 GLEAN mRNA 41247 46066 0.677586 - . ID=CGI_10002752; scaffold38360 GLEAN promoter 46067 47066 0.677586 - . ID=CGI_10002752; scaffold38360 WUBlastX LTR_Gypsy 48569 48718 52 + . . scaffold38360 WUBlastX LTR_Gypsy 49385 49702 47 + . . scaffold38360 WUBlastX LTR_Gypsy-Cigr 49421 49681 85 + . . scaffold38360 WUBlastX LTR_Gypsy 49722 49808 20 + . . scaffold38360 WUBlastX LTR_Gypsy 49817 50128 24 + . . scaffold38360 WUBlastX LTR_Gypsy 49817 49864 33 + . . scaffold38360 WUBlastX LTR_Gypsy 49829 49933 45 + . . scaffold38360 WUBlastX LTR_Gypsy 49867 49968 45 + . . scaffold38360 WUBlastX DNA_Harbinger 51178 51714 161 + . . scaffold38360 WUBlastX DNA_Harbinger 51711 51833 52 + . . scaffold38360 WUBlastX DNA_Harbinger 53127 53285 86 + . . scaffold38360 WUBlastX DNA_Harbinger 53130 53345 54 + . . scaffold38360 TRF Tandem_Repeat 54857 54887 53 + . . scaffold38364 TRF Tandem_Repeat 382 432 61 + . . scaffold38364 TRF Tandem_Repeat 1747 1802 112 + . . scaffold38364 TRF Tandem_Repeat 3092 3179 112 + . . scaffold38364 WUBlastX LINE_Penelope 3432 3920 199 + . . scaffold38364 GLEAN mRNA 6564 12008 0.998077 - . ID=CGI_10002729; scaffold38364 GLEAN promoter 12009 13008 0.998077 - . ID=CGI_10002729; scaffold38364 GLEAN promoter 12434 13433 0.986568 + . ID=CGI_10002730; scaffold38364 GLEAN mRNA 13434 14450 0.986568 + . ID=CGI_10002730; scaffold38364 WUBlastX LTR_Gypsy 13434 13979 43 + . . scaffold38364 WUBlastX LTR_Gypsy 13500 14330 42 + . . scaffold38364 WUBlastX LTR_Gypsy 13569 13922 71 + . . scaffold38364 WUBlastX LTR_Gypsy 13620 14162 65 + . . scaffold38364 GLEAN promoter 16724 17723 0.73812 + . ID=CGI_10002731; scaffold38364 GLEAN mRNA 17724 19431 0.73812 + . ID=CGI_10002731; scaffold38364 GLEAN mRNA 22111 23508 0.999674 - . ID=CGI_10002732; scaffold38364 GLEAN promoter 23509 24508 0.999674 - . ID=CGI_10002732; scaffold38364 TRF Tandem_Repeat 27078 27142 121 + . . scaffold38364 TRF Tandem_Repeat 39258 39303 92 + . . scaffold38364 GLEAN mRNA 45990 47387 0.988948 - . ID=CGI_10002733; scaffold38364 GLEAN promoter 47388 48387 0.988948 - . ID=CGI_10002733; scaffold38364 WUBlastX DNA_TcMar-Tc1 51633 51731 57 - . . scaffold38364 WUBlastX DNA_TcMar-Tc1 51734 52363 140 - . . scaffold38364 WUBlastX DNA_TcMar-Tc1 51961 52632 89 - . . scaffold38364 WUBlastX LINE_Jockey 52728 52853 24 + . . scaffold38364 WUBlastX LINE_L1-Tx1 53092 54981 793 + . . scaffold38366 GLEAN promoter 43801 44800 1 + . ID=CGI_10002737; scaffold38366 GLEAN mRNA 44801 54092 1 + . ID=CGI_10002737; scaffold38370 TRF Tandem_Repeat 5117 5152 72 + . . scaffold38370 GLEAN promoter 5912 6911 0.987276 + . ID=CGI_10002738; scaffold38370 TRF Tandem_Repeat 6483 6533 66 + . . scaffold38370 GLEAN mRNA 6912 11430 0.987276 + . ID=CGI_10002738; scaffold38370 TRF Tandem_Repeat 9628 9660 66 + . . scaffold38370 GLEAN mRNA 11205 12023 1 - . ID=CGI_10002739; scaffold38370 GLEAN promoter 12024 13023 1 - . ID=CGI_10002739; scaffold38370 GLEAN mRNA 24031 35973 0.974401 - . ID=CGI_10002740; scaffold38370 TRF Tandem_Repeat 28268 28336 138 + . . scaffold38370 GLEAN promoter 35974 36973 0.974401 - . ID=CGI_10002740; scaffold38370 GLEAN promoter 38682 39681 1 + . ID=CGI_10002741; scaffold38370 TRF Tandem_Repeat 38881 38961 153 + . . scaffold38370 GLEAN mRNA 39682 40837 1 + . ID=CGI_10002741; scaffold38370 WUBlastX LTR_Gypsy 43292 43927 35 + . . scaffold38370 WUBlastX LTR_DIRS 43427 43999 186 + . . scaffold38370 WUBlastX LTR_Gypsy 43463 44242 39 + . . scaffold38370 WUBlastX LTR_DIRS 43484 44098 135 + . . scaffold38370 WUBlastX LTR_DIRS 46133 47116 326 + . . scaffold38370 WUBlastX LTR_DIRS 47507 47854 46 + . . scaffold38370 GLEAN mRNA 49857 51524 0.996819 - . ID=CGI_10002742; scaffold38370 GLEAN promoter 51525 52524 0.996819 - . ID=CGI_10002742; scaffold38370 GLEAN mRNA 54065 55216 0.618186 - . ID=CGI_10002743; scaffold38370 GLEAN promoter 55217 55227 0.618186 - . ID=CGI_10002743; scaffold38372 GLEAN mRNA 4704 24889 0.799743 - . ID=CGI_10002748; scaffold38372 TRF Tandem_Repeat 8564 9829 1984 + . . scaffold38372 TRF Tandem_Repeat 10070 10276 360 + . . scaffold38372 GLEAN promoter 24890 25889 0.799743 - . ID=CGI_10002748; scaffold38372 GLEAN mRNA 27003 33364 0.999676 - . ID=CGI_10002749; scaffold38372 GLEAN promoter 33365 34364 0.999676 - . ID=CGI_10002749; scaffold38372 GLEAN promoter 34077 35076 0.995348 + . ID=CGI_10002750; scaffold38372 GLEAN mRNA 35077 36582 0.995348 + . ID=CGI_10002750; scaffold38372 WUBlastX DNA_Crypton 42317 42943 220 + . . scaffold38372 GLEAN promoter 43157 44156 0.999793 + . ID=CGI_10002751; scaffold38372 WUBlastX DNA_Crypton 43740 44105 32 + . . scaffold38372 GLEAN mRNA 44157 48691 0.999793 + . ID=CGI_10002751; scaffold38372 WUBlastX LINE_CR1-L2 52690 53079 25 + . . scaffold38372 WUBlastX LINE_L2 52771 53079 52 + . . scaffold38374 GLEAN mRNA 371 5753 0.999942 - . ID=CGI_10002744; scaffold38374 GLEAN promoter 5754 6753 0.999942 - . ID=CGI_10002744; scaffold38374 GLEAN promoter 7302 8301 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Ngaro 8113 8436 65 + . . scaffold38374 GLEAN mRNA 8302 17987 0.957619 + . ID=CGI_10002746; scaffold38374 WUBlastX LTR_Ngaro 8427 8516 26 + . . scaffold38374 WUBlastX LTR_Gypsy 13896 14594 26 + . . scaffold38374 WUBlastX LTR_Gypsy 14043 14606 43 + . . scaffold38374 WUBlastX LTR_Gypsy 14130 14639 64 + . . scaffold38374 WUBlastX LTR_Gypsy 14630 15463 50 + . . scaffold38374 WUBlastX LTR_Gypsy-Cigr 14792 15484 209 + . . scaffold38374 WUBlastX LTR_Gypsy 15058 16221 453 + . . scaffold38374 WUBlastX LTR_Gypsy 16215 17153 288 + . . scaffold38374 WUBlastX LTR_Gypsy 16404 17153 441 + . . scaffold38374 WUBlastX LTR_Gypsy-Cigr 17159 17557 97 + . . scaffold38374 WUBlastX LTR_Copia 18051 18137 22 + . . scaffold38374 WUBlastX LTR_ERV1 18294 18326 21 + . . scaffold38374 TRF Tandem_Repeat 21117 22768 1872 + . . scaffold38374 GLEAN mRNA 23371 24963 0.993414 - . ID=CGI_10002747; scaffold38374 GLEAN promoter 24964 25963 0.993414 - . ID=CGI_10002747; scaffold38374 WUBlastX DNA_TcMar-Marin 29336 29560 57 - . . scaffold38374 WUBlastX DNA_TcMar-Marin 29686 29742 21 - . . scaffold38374 TRF Tandem_Repeat 50510 50822 497 + . . scaffold38376 WUBlastX LINE_RTE-X 1 420 91 - . . scaffold38376 TRF Tandem_Repeat 5801 5908 128 + . . scaffold38376 TRF Tandem_Repeat 7438 7484 94 + . . scaffold38376 TRF Tandem_Repeat 8688 8757 106 + . . scaffold38376 TRF Tandem_Repeat 13984 14885 1166 + . . scaffold38376 TRF Tandem_Repeat 23725 23757 57 + . . scaffold38376 GLEAN mRNA 27034 27956 1 - . ID=CGI_10002734; scaffold38376 GLEAN promoter 27957 28956 1 - . ID=CGI_10002734; scaffold38376 TRF Tandem_Repeat 28276 29221 1287 + . . scaffold38376 TRF Tandem_Repeat 29260 29291 55 + . . scaffold38376 WUBlastX LTR_Gypsy 29688 29801 22 + . . scaffold38376 WUBlastX LTR_Gypsy 29783 30400 132 + . . scaffold38376 WUBlastX LTR_Gypsy 30032 30340 210 + . . scaffold38376 WUBlastX LTR_Gypsy 30166 31158 667 + . . scaffold38376 WUBlastX LTR_Gypsy-Cigr 30340 32166 866 + . . scaffold38376 WUBlastX LTR_Gypsy-Cigr 32174 32902 338 + . . scaffold38376 GLEAN promoter 33375 34374 0.629856 + . ID=CGI_10002735; scaffold38376 WUBlastX LTR_Gypsy-Cigr 33799 33936 26 + . . scaffold38376 GLEAN mRNA 34375 39830 0.629856 + . ID=CGI_10002735; scaffold38376 TRF Tandem_Repeat 37072 37110 51 + . . scaffold38376 WUBlastX LINE_L1-Tx1 42431 42499 26 + . . scaffold38376 WUBlastX LINE_L1-Tx1 42504 42761 80 + . . scaffold38376 WUBlastX LINE_L1-Tx1 42504 42833 61 + . . scaffold38376 WUBlastX LINE_L1 43550 43822 29 + . . scaffold38376 WUBlastX LINE_L1-Tx1 43730 43867 47 + . . scaffold38376 WUBlastX LINE_L1-Tx1 43743 44027 28 + . . scaffold38376 WUBlastX LINE_L1-Tx1 43791 43946 64 + . . scaffold38376 WUBlastX LINE_L1 44468 44803 36 + . . scaffold38376 TRF Tandem_Repeat 45110 45157 87 + . . scaffold38376 TRF Tandem_Repeat 50093 50138 74 + . . scaffold38376 TRF Tandem_Repeat 53317 53350 68 + . . scaffold38376 TRF Tandem_Repeat 54810 54863 99 + . . scaffold38378 TRF Tandem_Repeat 1606 1776 94 + . . scaffold38378 TRF Tandem_Repeat 1608 1708 98 + . . scaffold38378 TRF Tandem_Repeat 1706 1776 142 + . . scaffold38378 WUBlastX LINE_L1-Tx1 5483 6112 102 - . . scaffold38378 WUBlastX LINE_L1-Tx1 6201 7418 483 - . . scaffold38378 WUBlastX LINE_L1-Tx1 7385 8356 380 - . . scaffold38378 WUBlastX LINE_L1-Tx1 8340 9032 407 - . . scaffold38378 WUBlastX LINE_L1-Tx1 9052 9270 144 - . . scaffold38378 WUBlastX LINE_L2 9631 10377 87 - . . scaffold38378 WUBlastX LINE_L2 9634 10251 136 - . . scaffold38378 TRF Tandem_Repeat 44592 44666 95 + . . scaffold38378 TRF Tandem_Repeat 44595 44650 58 + . . scaffold38378 WUBlastX LTR_Ngaro 48541 48750 46 + . . scaffold38378 WUBlastX LTR_Ngaro 48717 48857 81 + . . scaffold38378 TRF Tandem_Repeat 48876 48963 133 + . . scaffold38378 WUBlastX LTR_Ngaro 49310 49486 60 + . . scaffold38378 WUBlastX LTR_Ngaro 49519 49716 97 + . . scaffold38378 WUBlastX LINE_L1-Tx1 50053 51417 81 - . . scaffold38378 WUBlastX LINE_L1-Tx1 50320 51429 86 - . . scaffold38378 WUBlastX LINE_L1-Tx1 50821 51420 104 - . . scaffold38378 WUBlastX LINE_L1-Tx1 51216 51803 101 - . . scaffold38378 WUBlastX LINE_L1 51806 51949 52 - . . scaffold38378 WUBlastX LINE_L1-Tx1 51833 52945 546 - . . scaffold38378 WUBlastX LINE_L1-Tx1 52959 53351 45 - . . scaffold38378 WUBlastX LINE_L1 53326 53652 73 - . . scaffold38378 WUBlastX LINE_L1-Tx1 53413 53655 135 - . . scaffold38378 WUBlastX LTR_Ngaro 53846 54445 322 + . . scaffold38378 WUBlastX LTR_Ngaro 53966 54598 105 + . . scaffold38378 WUBlastX LTR_Ngaro 54737 55168 86 + . . scaffold38378 WUBlastX LTR_Ngaro 54737 55078 116 + . . scaffold38382 GLEAN promoter 7522 8521 1 + . ID=CGI_10002753; scaffold38382 GLEAN mRNA 8522 11462 1 + . ID=CGI_10002753; scaffold38382 GLEAN mRNA 15068 18464 0.998274 - . ID=CGI_10002754; scaffold38382 GLEAN promoter 18465 19464 0.998274 - . ID=CGI_10002754; scaffold38382 WUBlastX LINE_CR1 20062 20190 47 - . . scaffold38382 WUBlastX LINE_CR1 20198 20305 38 - . . scaffold38382 WUBlastX LINE_CR1 20271 20411 43 - . . scaffold38382 WUBlastX LINE_CR1 20307 20384 47 - . . scaffold38382 WUBlastX LINE_CR1 20419 20487 39 - . . scaffold38382 GLEAN promoter 20439 21438 0.999676 + . ID=CGI_10002755; scaffold38382 GLEAN mRNA 21439 27793 0.999676 + . ID=CGI_10002755; scaffold38382 TRF Tandem_Repeat 22711 22786 152 + . . scaffold38382 WUBlastX DNA_Crypton 31109 31555 49 + . . scaffold38382 TRF Tandem_Repeat 31561 31603 86 + . . scaffold38382 GLEAN mRNA 36448 54425 1 - . ID=CGI_10002756; scaffold38382 GLEAN promoter 54426 55309 1 - . ID=CGI_10002756; scaffold38400 WUBlastX LINE_CR1-L2 6182 6484 92 + . . scaffold38400 WUBlastX LTR_DIRS 11361 11594 72 + . . scaffold38400 WUBlastX LTR_DIRS 11638 11958 173 + . . scaffold38400 WUBlastX LTR_DIRS 11966 12412 238 + . . scaffold38400 WUBlastX LTR_DIRS 12418 12801 76 + . . scaffold38400 WUBlastX LTR_DIRS 12418 12684 263 + . . scaffold38400 WUBlastX LTR_DIRS 12769 13776 707 + . . scaffold38400 TRF Tandem_Repeat 28574 28781 262 + . . scaffold38400 TRF Tandem_Repeat 28990 29493 341 + . . scaffold38400 TRF Tandem_Repeat 31468 31516 71 + . . scaffold38400 GLEAN mRNA 34811 43639 0.651101 - . ID=CGI_10002763; scaffold38400 TRF Tandem_Repeat 37145 37321 70 + . . scaffold38400 TRF Tandem_Repeat 38269 38294 52 + . . scaffold38400 TRF Tandem_Repeat 40854 40907 99 + . . scaffold38400 GLEAN promoter 43640 44639 0.651101 - . ID=CGI_10002763; scaffold38400 TRF Tandem_Repeat 43773 44080 323 + . . scaffold38414 GLEAN mRNA 54950 55609 1 - . ID=CGI_10002771; scaffold38414 GLEAN promoter 55610 55939 1 - . ID=CGI_10002771; scaffold38422 WUBlastX DNA_MuDR 664 1602 119 + . . scaffold38422 WUBlastX DNA_MuDR 1201 1665 175 + . . scaffold38422 WUBlastX DNA_MuDR 1713 1958 54 + . . scaffold38422 WUBlastX DNA_MuDR 1728 2012 43 + . . scaffold38422 TRF Tandem_Repeat 2579 2653 107 + . . scaffold38422 TRF Tandem_Repeat 3006 3290 333 + . . scaffold38422 TRF Tandem_Repeat 3006 3290 342 + . . scaffold38422 GLEAN mRNA 27073 31824 0.999996 - . ID=CGI_10002764; scaffold38422 WUBlastX LINE_L2 30377 30535 46 - . . scaffold38422 WUBlastX LINE_CR1 30413 30538 80 - . . scaffold38422 WUBlastX LINE_CR1 30419 30601 40 - . . scaffold38422 WUBlastX LINE_CR1 30422 30562 51 - . . scaffold38422 GLEAN promoter 31825 32824 0.999996 - . ID=CGI_10002764; scaffold38422 GLEAN mRNA 32716 32955 0.999999 - . ID=CGI_10002765; scaffold38422 GLEAN promoter 32956 33955 0.999999 - . ID=CGI_10002765; scaffold38422 GLEAN mRNA 37219 43064 0.998116 - . ID=CGI_10002766; scaffold38422 TRF Tandem_Repeat 39792 39828 74 + . . scaffold38422 TRF Tandem_Repeat 41074 41119 92 + . . scaffold38422 GLEAN promoter 43065 44064 0.998116 - . ID=CGI_10002766; scaffold38422 TRF Tandem_Repeat 43374 43440 89 + . . scaffold38438 WUBlastX LTR_Pao 4463 5281 738 - . . scaffold38438 WUBlastX LTR_Pao 4562 5419 285 - . . scaffold38438 WUBlastX LTR_Pao 5296 5568 258 - . . scaffold38438 WUBlastX LTR_Pao 5296 5715 190 - . . scaffold38438 WUBlastX DNA_Academ 6465 6755 41 - . . scaffold38438 WUBlastX LTR_Pao 7173 7694 151 - . . scaffold38438 WUBlastX LTR_Pao 7628 8569 243 - . . scaffold38438 WUBlastX LTR_Pao 7628 8233 252 - . . scaffold38438 WUBlastX LTR_Pao 8725 8979 20 - . . scaffold38438 TRF Tandem_Repeat 13524 13559 65 + . . scaffold38438 TRF Tandem_Repeat 47178 47234 114 + . . scaffold38438 GLEAN promoter 48956 49955 0.544675 + . ID=CGI_10002769; scaffold38438 GLEAN mRNA 49956 53504 0.544675 + . ID=CGI_10002769; scaffold38438 GLEAN mRNA 54044 54235 0.618241 - . ID=CGI_10002770; scaffold38438 WUBlastX DNA_TcMar-Marin 54086 54214 48 - . . scaffold38438 WUBlastX DNA_TcMar-Marin 54107 54250 70 - . . scaffold38438 GLEAN promoter 54236 55235 0.618241 - . ID=CGI_10002770; scaffold38438 TRF Tandem_Repeat 54297 54347 57 + . . scaffold38438 TRF Tandem_Repeat 54302 54344 59 + . . scaffold38444 GLEAN mRNA 26055 27512 1 - . ID=CGI_10002767; scaffold38444 GLEAN promoter 27513 28512 1 - . ID=CGI_10002767; scaffold38444 GLEAN mRNA 34711 52842 0.220703 - . ID=CGI_10002768; scaffold38444 GLEAN promoter 52843 53842 0.220703 - . ID=CGI_10002768; scaffold38448 TRF Tandem_Repeat 4585 5692 485 + . . scaffold38448 TRF Tandem_Repeat 4618 5143 279 + . . scaffold38448 TRF Tandem_Repeat 7677 7723 94 + . . scaffold38448 WUBlastX LINE_Proto2 15421 18138 326 + . . scaffold38448 WUBlastX LINE_RTE-X 16042 18825 263 + . . scaffold38448 WUBlastX LINE_RTE-X 16549 18231 452 + . . scaffold38448 TRF Tandem_Repeat 19681 19971 402 + . . scaffold38448 TRF Tandem_Repeat 19683 19835 63 + . . scaffold38448 GLEAN promoter 21518 22517 0.579386 + . ID=CGI_10002778; scaffold38448 GLEAN mRNA 22518 24167 0.579386 + . ID=CGI_10002778; scaffold38448 TRF Tandem_Repeat 25925 25951 54 + . . scaffold38448 WUBlastX LINE_L2 28591 29067 174 - . . scaffold38448 WUBlastX LINE_L2 29043 29333 75 - . . scaffold38448 GLEAN promoter 30492 31491 0.999937 + . ID=CGI_10002779; scaffold38448 GLEAN mRNA 31492 37691 0.999937 + . ID=CGI_10002779; scaffold38448 WUBlastX LTR_Ngaro 32634 33083 108 - . . scaffold38448 WUBlastX LTR_Ngaro 33487 34740 144 - . . scaffold38448 WUBlastX LTR_Ngaro 34755 34898 68 - . . scaffold38448 WUBlastX LTR_Ngaro 34755 34985 62 - . . scaffold38448 TRF Tandem_Repeat 36643 36682 80 + . . scaffold38448 GLEAN promoter 37584 38583 0.999642 + . ID=CGI_10002780; scaffold38448 GLEAN mRNA 38584 39306 0.999642 + . ID=CGI_10002780; scaffold38448 WUBlastX LINE_Tad1? 46020 46547 84 + . . scaffold38448 WUBlastX RC_Helitron 46059 48305 74 + . . scaffold38448 WUBlastX RC_Helitron 46116 47510 124 + . . scaffold38448 WUBlastX RC_Helitron 48354 50213 140 + . . scaffold38448 WUBlastX RC_Helitron 48678 50282 197 + . . scaffold38448 WUBlastX DNA_Helitron 48924 50276 209 + . . scaffold38458 WUBlastX LTR_Ngaro 5783 6088 122 + . . scaffold38458 WUBlastX LTR_Ngaro 5783 6151 40 + . . scaffold38458 WUBlastX DNA_Academ 14728 14994 55 + . . scaffold38458 GLEAN mRNA 24004 48003 0.996054 - . ID=CGI_10002783; scaffold38458 TRF Tandem_Repeat 32379 32478 110 + . . scaffold38458 TRF Tandem_Repeat 36430 36485 112 + . . scaffold38458 GLEAN promoter 37002 38001 0.84332 + . ID=CGI_10002784; scaffold38458 GLEAN mRNA 38002 56000 0.84332 + . ID=CGI_10002784; scaffold38458 TRF Tandem_Repeat 40688 40738 50 + . . scaffold38458 TRF Tandem_Repeat 41193 41226 50 + . . scaffold38458 TRF Tandem_Repeat 45492 45540 55 + . . scaffold38458 GLEAN promoter 48004 49003 0.996054 - . ID=CGI_10002783; scaffold38458 WUBlastX DNA_Harbinger 52840 53298 107 + . . scaffold38458 WUBlastX DNA_Harbinger 52861 53226 123 + . . scaffold38458 WUBlastX DNA_Harbinger 53837 53986 64 + . . scaffold38458 WUBlastX DNA_Harbinger 53846 53965 107 + . . scaffold38458 GLEAN promoter 55051 56050 0.999372 + . ID=CGI_10002785; scaffold38458 WUBlastX LINE_L2 55758 56003 29 + . . scaffold38458 WUBlastX LINE_CR1-L2 56006 56308 22 + . . scaffold38458 GLEAN mRNA 56051 56269 0.999372 + . ID=CGI_10002785; scaffold38458 WUBlastX LINE_CR1-L2 56099 56332 51 + . . scaffold38464 GLEAN promoter 1 564 1 + . ID=CGI_10002791; scaffold38464 GLEAN mRNA 565 5108 1 + . ID=CGI_10002791; scaffold38464 GLEAN promoter 15633 16632 0.999993 + . ID=CGI_10002792; scaffold38464 GLEAN mRNA 16633 19932 0.999993 + . ID=CGI_10002792; scaffold38464 WUBlastX LINE_CR1 28925 29329 73 - . . scaffold38464 WUBlastX LINE_RTE-X 28967 29284 88 - . . scaffold38464 GLEAN mRNA 29156 32869 1 - . ID=CGI_10002793; scaffold38464 WUBlastX LTR_Ngaro 29526 30398 454 - . . scaffold38464 WUBlastX LTR_Ngaro 30440 30691 156 - . . scaffold38464 WUBlastX LTR_Ngaro 30697 31179 224 - . . scaffold38464 WUBlastX LTR_Ngaro 31194 31346 87 - . . scaffold38464 WUBlastX LTR_Ngaro 31268 31753 337 - . . scaffold38464 WUBlastX LTR_Ngaro 31738 31998 89 - . . scaffold38464 WUBlastX LTR_Ngaro 32260 32370 20 - . . scaffold38464 WUBlastX LTR_Ngaro 32323 32370 22 - . . scaffold38464 WUBlastX LTR_Ngaro 32366 32746 153 - . . scaffold38464 GLEAN promoter 32870 33869 1 - . ID=CGI_10002793; scaffold38464 TRF Tandem_Repeat 34592 34674 87 + . . scaffold38464 WUBlastX LTR_Ngaro 42419 43369 273 - . . scaffold38464 WUBlastX LTR_Ngaro 43351 44904 983 - . . scaffold38464 WUBlastX LTR_Ngaro 44912 45943 113 - . . scaffold38464 WUBlastX DNA_PiggyBac 52986 53378 89 + . . scaffold38464 WUBlastX DNA_PiggyBac 53383 53448 48 + . . scaffold38464 WUBlastX DNA_PiggyBac 53949 53993 22 + . . scaffold38464 TRF Tandem_Repeat 54034 54083 64 + . . scaffold38466 GLEAN promoter 2170 3169 0.999675 + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3161 3319 21 + . . scaffold38466 GLEAN mRNA 3170 4605 0.999675 + . ID=CGI_10002797; scaffold38466 WUBlastX DNA_Kolobok-Hyd 3590 3655 26 + . . scaffold38466 WUBlastX DNA_Kolobok-Hyd 3620 3688 23 + . . scaffold38466 WUBlastX DNA_Kolobok-Hyd 3880 4548 37 + . . scaffold38466 GLEAN promoter 4015 5014 0.999027 + . ID=CGI_10002798; scaffold38466 GLEAN mRNA 5015 30508 0.999027 + . ID=CGI_10002798; scaffold38466 WUBlastX DNA_Zator 16442 16645 66 - . . scaffold38466 WUBlastX DNA_Zator 16782 16874 25 - . . scaffold38466 TRF Tandem_Repeat 28697 28733 74 + . . scaffold38466 GLEAN promoter 32312 33311 0.99917 + . ID=CGI_10002799; scaffold38466 GLEAN mRNA 33312 42675 0.99917 + . ID=CGI_10002799; scaffold38466 TRF Tandem_Repeat 47877 47961 98 + . . scaffold38468 GLEAN promoter 8723 9722 0.919269 + . ID=CGI_10002786; scaffold38468 GLEAN mRNA 9723 16414 0.919269 + . ID=CGI_10002786; scaffold38468 GLEAN promoter 22966 23965 0.889866 + . ID=CGI_10002787; scaffold38468 GLEAN mRNA 23966 30087 0.889866 + . ID=CGI_10002787; scaffold38468 GLEAN mRNA 34769 45899 0.911812 - . ID=CGI_10002788; scaffold38468 GLEAN promoter 45455 46454 1 + . ID=CGI_10002789; scaffold38468 GLEAN promoter 45900 46899 0.911812 - . ID=CGI_10002788; scaffold38468 GLEAN mRNA 46455 48137 1 + . ID=CGI_10002789; scaffold38468 GLEAN mRNA 47957 56031 1 - . ID=CGI_10002790; scaffold38468 GLEAN promoter 56032 56441 1 - . ID=CGI_10002790; scaffold38480 TRF Tandem_Repeat 38197 38231 70 + . . scaffold38480 WUBlastX DNA_TcMar-Marin 40832 40963 32 - . . scaffold38480 WUBlastX DNA_TcMar-Marin 41166 41366 25 - . . scaffold38480 TRF Tandem_Repeat 49080 49122 77 + . . scaffold38480 TRF Tandem_Repeat 49741 49780 80 + . . scaffold38480 TRF Tandem_Repeat 50470 50544 80 + . . scaffold38480 WUBlastX LTR_Ngaro 52013 52366 295 - . . scaffold38480 WUBlastX LTR_Ngaro 52602 52841 80 - . . scaffold38480 GLEAN mRNA 52810 53205 1 - . ID=CGI_10002772; scaffold38480 WUBlastX LTR_Ngaro 52831 53943 204 - . . scaffold38480 GLEAN promoter 53206 54205 1 - . ID=CGI_10002772; scaffold38480 GLEAN mRNA 54876 55466 0.777767 - . ID=CGI_10002773; scaffold38480 GLEAN promoter 55467 56087 0.777767 - . ID=CGI_10002773; scaffold38492 WUBlastX LTR_Gypsy 2 418 248 + . . scaffold38492 WUBlastX LTR_Gypsy 8 355 279 + . . scaffold38492 WUBlastX LTR_Gypsy 342 455 60 + . . scaffold38492 WUBlastX LTR_Gypsy 439 930 326 + . . scaffold38492 WUBlastX LTR_Gypsy 451 1038 217 + . . scaffold38492 WUBlastX LTR_Gypsy 8265 8414 49 + . . scaffold38492 WUBlastX LTR_Gypsy 8295 8417 77 + . . scaffold38492 WUBlastX LTR_Gypsy 8458 8613 79 + . . scaffold38492 WUBlastX DNA_Maverick 9377 9679 118 + . . scaffold38492 WUBlastX DNA_Maverick 9464 10126 44 + . . scaffold38492 WUBlastX DNA_Maverick 9612 9977 134 + . . scaffold38492 WUBlastX DNA_Maverick 9630 9923 232 + . . scaffold38492 WUBlastX DNA_Maverick 9904 10020 105 + . . scaffold38492 WUBlastX DNA_Maverick 10223 10558 203 + . . scaffold38492 WUBlastX LTR_Pao 12308 12661 54 + . . scaffold38492 TRF Tandem_Repeat 12702 13158 571 + . . scaffold38492 WUBlastX LTR_Pao 13175 18289 3977 + . . scaffold38492 WUBlastX LINE_Penelope 21697 21834 51 + . . scaffold38492 GLEAN mRNA 22581 25357 0.777277 - . ID=CGI_10002800; scaffold38492 WUBlastX DNA_TcMar-Tc2 22584 23594 202 - . . scaffold38492 WUBlastX DNA_TcMar-Tc2 22752 23627 214 - . . scaffold38492 GLEAN promoter 25358 26357 0.777277 - . ID=CGI_10002800; scaffold38492 WUBlastX DNA_Kolobok-IS4 33614 33862 91 + . . scaffold38492 TRF Tandem_Repeat 33947 33994 60 + . . scaffold38492 TRF Tandem_Repeat 33947 33991 81 + . . scaffold38492 WUBlastX DNA_hAT-Hobo 38135 38317 75 - . . scaffold38492 WUBlastX DNA_hAT-Ac 38135 38281 87 - . . scaffold38492 WUBlastX DNA_hAT 38153 38347 62 - . . scaffold38492 TRF Tandem_Repeat 46662 46697 72 + . . scaffold38492 GLEAN mRNA 50979 51701 0.996683 - . ID=CGI_10002801; scaffold38492 GLEAN promoter 51702 52701 0.996683 - . ID=CGI_10002801; scaffold38492 GLEAN mRNA 51747 51983 0.999371 - . ID=CGI_10002802; scaffold38492 GLEAN promoter 51984 52983 0.999371 - . ID=CGI_10002802; scaffold38492 GLEAN mRNA 52254 52535 0.776639 - . ID=CGI_10002803; scaffold38492 GLEAN promoter 52536 53535 0.776639 - . ID=CGI_10002803; scaffold38492 WUBlastX DNA_hAT-Tip100 52695 53024 56 - . . scaffold38492 WUBlastX DNA_hAT-Tip100 52749 53153 228 - . . scaffold38492 WUBlastX DNA_hAT-Tip100 53604 54254 189 - . . scaffold38492 WUBlastX DNA_hAT-Tip100 53625 54170 508 - . . scaffold38494 GLEAN promoter 537 1536 1 + . ID=CGI_10002804; scaffold38494 GLEAN mRNA 1537 2063 1 + . ID=CGI_10002804; scaffold38494 GLEAN mRNA 3954 7363 0.934481 - . ID=CGI_10002805; scaffold38494 GLEAN promoter 7364 8363 0.934481 - . ID=CGI_10002805; scaffold38494 GLEAN promoter 7485 8484 0.992441 + . ID=CGI_10002806; scaffold38494 GLEAN mRNA 8485 55173 0.992441 + . ID=CGI_10002806; scaffold38494 TRF Tandem_Repeat 11920 12131 243 + . . scaffold38494 TRF Tandem_Repeat 21779 21829 102 + . . scaffold38494 TRF Tandem_Repeat 31861 31910 100 + . . scaffold38494 TRF Tandem_Repeat 35930 37072 1531 + . . scaffold38494 TRF Tandem_Repeat 40828 40883 112 + . . scaffold38494 TRF Tandem_Repeat 44974 45103 156 + . . scaffold38494 WUBlastX LINE_L2 54802 55128 61 + . . scaffold38494 WUBlastX LINE_L2 54841 55077 75 + . . scaffold38494 WUBlastX LINE_L1-Tx1 56040 56720 409 + . . scaffold38498 WUBlastX DNA_Crypton 2027 2302 47 + . . scaffold38498 WUBlastX DNA_Crypton 2478 3149 57 + . . scaffold38498 TRF Tandem_Repeat 7385 7454 104 + . . scaffold38498 WUBlastX LTR_Ngaro 20410 20568 79 - . . scaffold38498 WUBlastX LTR_Ngaro 20612 20857 68 - . . scaffold38498 GLEAN promoter 23074 24073 1 + . ID=CGI_10002819; scaffold38498 GLEAN mRNA 24074 29205 1 + . ID=CGI_10002819; scaffold38498 TRF Tandem_Repeat 25221 25445 351 + . . scaffold38498 TRF Tandem_Repeat 26711 27485 810 + . . scaffold38498 TRF Tandem_Repeat 26711 27485 744 + . . scaffold38498 WUBlastX LINE_Penelope 33656 34399 60 - . . scaffold38498 WUBlastX LINE_Penelope 33806 34411 154 - . . scaffold38498 WUBlastX LTR_Ngaro 35987 36169 51 - . . scaffold38498 WUBlastX LTR_Ngaro 36020 36907 139 - . . scaffold38498 WUBlastX LTR_Ngaro 36910 37326 282 - . . scaffold38498 WUBlastX LTR_Ngaro 37331 38401 754 - . . scaffold38498 WUBlastX LTR_Ngaro 38379 39464 212 - . . scaffold38498 TRF Tandem_Repeat 39738 40373 911 + . . scaffold38498 WUBlastX LINE_RTE-X 43898 44068 90 + . . scaffold38498 WUBlastX LINE_RTE-X 43925 44191 95 + . . scaffold38498 GLEAN mRNA 46422 56073 0.99956 - . ID=CGI_10002820; scaffold38498 GLEAN promoter 56074 56998 0.99956 - . ID=CGI_10002820; scaffold385 TRF Tandem_Repeat 1123 1224 118 + . . scaffold385 GLEAN promoter 1137 2136 0.999946 + . ID=CGI_10011594; scaffold385 GLEAN mRNA 2137 17217 0.999946 + . ID=CGI_10011594; scaffold385 TRF Tandem_Repeat 8677 8729 99 + . . scaffold385 WUBlastX DNA_TcMar-Tc1 19362 20093 327 + . . scaffold385 WUBlastX DNA_TcMar-Tc1 20102 20248 85 + . . scaffold385 GLEAN mRNA 41621 42019 0.498428 - . ID=CGI_10011595; scaffold385 GLEAN promoter 42020 43019 0.498428 - . ID=CGI_10011595; scaffold385 TRF Tandem_Repeat 51029 51086 116 + . . scaffold385 TRF Tandem_Repeat 63316 63351 54 + . . scaffold385 WUBlastX DNA_Sola 73086 73322 69 + . . scaffold385 WUBlastX DNA_Sola 73134 73682 94 + . . scaffold385 WUBlastX DNA_Sola 73673 74332 352 + . . scaffold385 WUBlastX DNA_Sola 74389 74616 93 + . . scaffold385 TRF Tandem_Repeat 80324 80397 148 + . . scaffold385 WUBlastX DNA_Harbinger 85922 86209 45 - . . scaffold385 WUBlastX DNA_Harbinger 85982 86431 184 - . . scaffold385 WUBlastX DNA_Harbinger 86634 86822 75 - . . scaffold385 TRF Tandem_Repeat 86881 86918 76 + . . scaffold385 TRF Tandem_Repeat 105406 105437 55 + . . scaffold385 GLEAN promoter 126489 127488 0.618241 + . ID=CGI_10011597; scaffold385 GLEAN mRNA 126563 138970 0.944104 - . ID=CGI_10011596; scaffold385 GLEAN mRNA 127489 127668 0.618241 + . ID=CGI_10011597; scaffold385 WUBlastX LINE_CR1 138372 138572 39 + . . scaffold385 WUBlastX LINE_CR1 138566 138745 34 + . . scaffold385 WUBlastX LINE_CR1 138721 138831 26 + . . scaffold385 GLEAN promoter 138971 139970 0.944104 - . ID=CGI_10011596; scaffold385 WUBlastX LINE_CR1 139356 139943 21 + . . scaffold385 WUBlastX LINE_CR1 139356 139853 44 + . . scaffold385 GLEAN promoter 139559 140558 1 + . ID=CGI_10011598; scaffold385 GLEAN mRNA 140559 147847 1 + . ID=CGI_10011598; scaffold385 TRF Tandem_Repeat 151920 152117 98 + . . scaffold385 TRF Tandem_Repeat 156527 156564 76 + . . scaffold385 GLEAN mRNA 157110 172990 0.981213 - . ID=CGI_10011599; scaffold385 TRF Tandem_Repeat 161645 161788 216 + . . scaffold385 TRF Tandem_Repeat 162172 162237 132 + . . scaffold385 GLEAN promoter 172991 173990 0.981213 - . ID=CGI_10011599; scaffold385 TRF Tandem_Repeat 173352 173387 72 + . . scaffold385 TRF Tandem_Repeat 184784 184834 75 + . . scaffold385 WUBlastX LTR_Pao 186836 187156 21 + . . scaffold385 WUBlastX LTR_Pao 187031 187360 75 + . . scaffold385 WUBlastX LTR_Pao 187277 188590 730 + . . scaffold385 WUBlastX LTR_Pao 188396 188629 42 + . . scaffold385 WUBlastX LTR_Gypsy 193253 193381 22 + . . scaffold385 WUBlastX LTR_Gypsy 193820 194170 157 + . . scaffold385 WUBlastX LTR_Gypsy 193874 194170 223 + . . scaffold385 TRF Tandem_Repeat 196693 196758 53 + . . scaffold385 WUBlastX LINE_CR1-L2 217037 217384 29 - . . scaffold385 WUBlastX LINE_L2 217069 217320 45 - . . scaffold385 WUBlastX LINE_RTE-X 218032 218256 74 + . . scaffold385 WUBlastX LINE_RTE-BovB 218083 218331 42 + . . scaffold385 WUBlastX LINE_RTE-X 218294 218449 23 + . . scaffold385 TRF Tandem_Repeat 225316 225410 84 + . . scaffold385 WUBlastX DNA_hAT-hATw 254995 255969 319 - . . scaffold385 WUBlastX DNA_hAT-hATw 255980 257428 286 - . . scaffold385 WUBlastX LTR_Copia 257529 257762 21 - . . scaffold385 WUBlastX LTR_Gypsy 263003 263614 58 + . . scaffold385 GLEAN promoter 263062 264061 0.999953 + . ID=CGI_10011600; scaffold385 WUBlastX LTR_Gypsy 263114 263731 51 + . . scaffold385 WUBlastX LTR_Gypsy 263426 263875 25 + . . scaffold385 WUBlastX LTR_Copia 263504 263776 47 + . . scaffold385 GLEAN mRNA 264062 264457 0.999953 + . ID=CGI_10011600; scaffold385 GLEAN mRNA 273365 289522 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX DNA_TcMar-Tc1 275556 275648 24 + . . scaffold385 WUBlastX DNA_TcMar-Tc1 276034 276102 22 + . . scaffold385 WUBlastX DNA_TcMar-Tc1 276059 276652 44 + . . scaffold385 WUBlastX DNA_TcMar-Tc1 276652 277014 80 + . . scaffold385 WUBlastX DNA_TcMar-Tc1 276655 276936 99 + . . scaffold385 TRF Tandem_Repeat 283602 283645 70 + . . scaffold385 TRF Tandem_Repeat 283615 283648 50 + . . scaffold385 GLEAN promoter 289523 290522 0.998167 - . ID=CGI_10011601; scaffold385 WUBlastX LTR_DIRS 291466 291594 60 + . . scaffold38508 GLEAN promoter 12270 13269 1 + . ID=CGI_10002812; scaffold38508 GLEAN mRNA 13270 16057 1 + . ID=CGI_10002812; scaffold38508 GLEAN mRNA 34484 35137 0.777172 - . ID=CGI_10002813; scaffold38508 GLEAN promoter 35138 36137 0.777172 - . ID=CGI_10002813; scaffold38508 GLEAN mRNA 35909 51408 0.999544 - . ID=CGI_10002814; scaffold38508 GLEAN promoter 51409 52408 0.999544 - . ID=CGI_10002814; scaffold38510 GLEAN mRNA 2036 6220 0.615404 - . ID=CGI_10002809; scaffold38510 GLEAN promoter 6221 7220 0.615404 - . ID=CGI_10002809; scaffold38510 GLEAN mRNA 7470 20879 0.242516 - . ID=CGI_10002810; scaffold38510 TRF Tandem_Repeat 7560 7611 79 + . . scaffold38510 TRF Tandem_Repeat 15411 15519 85 + . . scaffold38510 TRF Tandem_Repeat 15417 15518 59 + . . scaffold38510 GLEAN promoter 15647 16646 0.996228 + . ID=CGI_10002811; scaffold38510 GLEAN mRNA 16647 55821 0.996228 + . ID=CGI_10002811; scaffold38510 TRF Tandem_Repeat 18479 18528 100 + . . scaffold38510 WUBlastX DNA_TcMar-Tc1 19997 20395 35 - . . scaffold38510 WUBlastX DNA_TcMar-Tc1 20028 20267 99 - . . scaffold38510 WUBlastX DNA_TcMar-Tc1 20636 20773 35 - . . scaffold38510 WUBlastX DNA_TcMar-Tc1 20678 20854 22 - . . scaffold38510 WUBlastX DNA_TcMar-Tc1 20690 20794 24 - . . scaffold38510 GLEAN promoter 20880 21879 0.242516 - . ID=CGI_10002810; scaffold38510 TRF Tandem_Repeat 22945 23315 442 + . . scaffold38510 TRF Tandem_Repeat 24013 24559 671 + . . scaffold38510 TRF Tandem_Repeat 24031 24559 637 + . . scaffold38510 TRF Tandem_Repeat 24031 24559 683 + . . scaffold38510 WUBlastX DNA_Sola 24590 24946 43 + . . scaffold38510 WUBlastX DNA_Sola 27743 27997 86 + . . scaffold38510 WUBlastX DNA_Sola 28327 28410 28 + . . scaffold38510 WUBlastX DNA_Sola 28534 28995 23 + . . scaffold38510 WUBlastX DNA_Sola 28684 28986 131 + . . scaffold38510 WUBlastX DNA_Sola 29349 29459 22 + . . scaffold38510 WUBlastX DNA_Sola 29367 29462 24 + . . scaffold38510 WUBlastX DNA_Sola 29630 29857 41 + . . scaffold38510 WUBlastX DNA_Sola 30058 30306 171 + . . scaffold38510 WUBlastX DNA_Sola 30638 30829 46 + . . scaffold38510 WUBlastX DNA_Sola 30674 30877 136 + . . scaffold38510 WUBlastX DNA_Sola 30716 30910 26 + . . scaffold38510 WUBlastX DNA_Sola 31148 31480 120 + . . scaffold38510 WUBlastX DNA_Sola 31622 32182 56 + . . scaffold38510 WUBlastX DNA_Sola 31742 32158 120 + . . scaffold38514 WUBlastX LTR_Gypsy 4 1209 776 + . . scaffold38514 WUBlastX LTR_Gypsy 4085 4243 84 - . . scaffold38514 TRF Tandem_Repeat 30507 31586 1413 + . . scaffold38514 TRF Tandem_Repeat 50566 50601 63 + . . scaffold38524 GLEAN promoter 1 255 1 + . ID=CGI_10002815; scaffold38524 GLEAN mRNA 256 1626 1 + . ID=CGI_10002815; scaffold38524 GLEAN mRNA 1984 2682 0.999998 - . ID=CGI_10002816; scaffold38524 GLEAN promoter 2683 3682 0.999998 - . ID=CGI_10002816; scaffold38524 GLEAN promoter 4767 5766 0.937298 + . ID=CGI_10002817; scaffold38524 GLEAN mRNA 5767 9006 0.937298 + . ID=CGI_10002817; scaffold38524 TRF Tandem_Repeat 12969 13006 67 + . . scaffold38524 TRF Tandem_Repeat 12972 13014 52 + . . scaffold38524 WUBlastX DNA_TcMar-Tigge 14395 15162 225 + . . scaffold38524 WUBlastX DNA_TcMar-Pogo 14512 15843 691 + . . scaffold38524 GLEAN promoter 31557 32556 0.999995 + . ID=CGI_10002818; scaffold38524 GLEAN mRNA 32557 37386 0.999995 + . ID=CGI_10002818; scaffold38524 WUBlastX LINE_L2 42599 43375 58 - . . scaffold38524 WUBlastX RC_Helitron 42719 45241 1372 - . . scaffold38524 WUBlastX RC_Helitron 45213 47312 1618 - . . scaffold38524 WUBlastX RC_Helitron 47317 49167 459 - . . scaffold38524 WUBlastX RC_Helitron 48796 50154 276 - . . scaffold38532 TRF Tandem_Repeat 3700 3739 80 + . . scaffold38532 WUBlastX LTR_Gypsy 7632 7736 21 + . . scaffold38532 WUBlastX LTR_DIRS 7692 8381 104 + . . scaffold38532 WUBlastX LTR_Gypsy 8325 8399 22 + . . scaffold38532 WUBlastX LTR_DIRS 8506 10359 751 + . . scaffold38532 WUBlastX LTR_DIRS 10667 10996 137 + . . scaffold38532 WUBlastX LTR_DIRS? 10992 11615 294 + . . scaffold38532 TRF Tandem_Repeat 14829 14870 84 + . . scaffold38532 TRF Tandem_Repeat 16250 16283 68 + . . scaffold38532 TRF Tandem_Repeat 30200 30420 349 + . . scaffold38532 WUBlastX LTR_Gypsy 33114 33506 84 + . . scaffold38532 WUBlastX LTR_Gypsy 33216 33560 89 + . . scaffold38532 WUBlastX LTR_Gypsy 33222 33503 148 + . . scaffold38532 WUBlastX LTR_Gypsy 33558 34799 216 + . . scaffold38532 TRF Tandem_Repeat 38963 39050 68 + . . scaffold38532 TRF Tandem_Repeat 40741 41482 997 + . . scaffold38532 GLEAN mRNA 48785 56819 0.999998 - . ID=CGI_10002832; scaffold38532 TRF Tandem_Repeat 50689 50720 64 + . . scaffold38532 WUBlastX LTR_Ngaro 54971 55102 49 - . . scaffold38532 WUBlastX LTR_Ngaro 55174 55320 28 - . . scaffold38532 WUBlastX LTR_Ngaro 55506 56339 165 - . . scaffold38532 WUBlastX LTR_Ngaro 55749 56339 171 - . . scaffold38532 WUBlastX LTR_Ngaro 56511 56702 83 - . . scaffold38532 WUBlastX LTR_Ngaro 56562 56717 89 - . . scaffold38532 GLEAN promoter 56820 57155 0.999998 - . ID=CGI_10002832; scaffold38546 TRF Tandem_Repeat 1123 1201 95 + . . scaffold38546 TRF Tandem_Repeat 1123 1201 95 + . . scaffold38546 TRF Tandem_Repeat 1125 1201 104 + . . scaffold38546 WUBlastX LTR_Gypsy 13173 13796 120 - . . scaffold38546 WUBlastX LTR_Gypsy 13790 14068 147 - . . scaffold38546 WUBlastX LTR_Gypsy 14038 14517 210 - . . scaffold38546 WUBlastX LTR_Gypsy 14539 14889 380 - . . scaffold38546 WUBlastX LTR_Gypsy 14903 15625 512 - . . scaffold38546 WUBlastX LTR_Gypsy 15630 16577 829 - . . scaffold38546 WUBlastX LTR_Gypsy-Cigr 16547 16768 20 - . . scaffold38546 WUBlastX LTR_Gypsy 16637 17302 134 - . . scaffold38546 WUBlastX LTR_Gypsy 17443 17568 23 - . . scaffold38546 WUBlastX LTR_Gypsy 17482 17586 51 - . . scaffold38546 WUBlastX LTR_Gypsy 17643 18575 41 - . . scaffold38546 WUBlastX LTR_Gypsy 17643 18416 347 - . . scaffold38546 WUBlastX LTR_Gypsy 17793 18425 359 - . . scaffold38546 WUBlastX LINE_L1-Tx1 21292 21897 53 - . . scaffold38546 TRF Tandem_Repeat 24554 24606 106 + . . scaffold38546 TRF Tandem_Repeat 25132 25177 92 + . . scaffold38546 TRF Tandem_Repeat 28301 28342 84 + . . scaffold38546 GLEAN promoter 34935 35934 0.999346 + . ID=CGI_10002835; scaffold38546 TRF Tandem_Repeat 35235 35271 65 + . . scaffold38546 GLEAN mRNA 35935 37146 0.999346 + . ID=CGI_10002835; scaffold38546 TRF Tandem_Repeat 39342 39531 172 + . . scaffold38546 WUBlastX LINE_RTE-X 42452 43768 448 - . . scaffold38546 TRF Tandem_Repeat 44313 44353 82 + . . scaffold38546 GLEAN promoter 45572 46571 0.999997 + . ID=CGI_10002836; scaffold38546 GLEAN mRNA 46572 52007 0.999997 + . ID=CGI_10002836; scaffold38546 TRF Tandem_Repeat 47044 47521 929 + . . scaffold38552 WUBlastX LINE_CR1-L2 3979 4257 74 + . . scaffold38552 WUBlastX LINE_RTE-X 4060 4287 103 + . . scaffold38552 WUBlastX LINE_RTE-X 4108 4317 129 + . . scaffold38552 WUBlastX LINE_RTE-X 4108 4758 97 + . . scaffold38552 WUBlastX LINE_RTE-X 4597 5070 118 + . . scaffold38552 WUBlastX LINE_RTE-X 4763 5575 36 + . . scaffold38552 WUBlastX LINE_RTE-X 5497 5589 22 + . . scaffold38552 TRF Tandem_Repeat 7276 7393 130 + . . scaffold38552 TRF Tandem_Repeat 7276 7393 130 + . . scaffold38552 GLEAN promoter 7293 8292 0.937847 + . ID=CGI_10002837; scaffold38552 GLEAN mRNA 8293 11369 0.937847 + . ID=CGI_10002837; scaffold38552 WUBlastX LINE_RTE-X 12197 12466 92 + . . scaffold38552 WUBlastX LINE_RTE-X 12224 12568 55 + . . scaffold38552 TRF Tandem_Repeat 18443 18549 133 + . . scaffold38552 WUBlastX LTR_Gypsy 18794 18970 53 + . . scaffold38552 WUBlastX LTR_Gypsy 18806 19003 26 + . . scaffold38552 WUBlastX LTR_Gypsy 19003 19389 187 + . . scaffold38552 WUBlastX LTR_Gypsy 19072 19383 193 + . . scaffold38552 WUBlastX LTR_Gypsy 19280 19843 240 + . . scaffold38552 WUBlastX LTR_Gypsy-Cigr 19385 19843 283 + . . scaffold38552 WUBlastX LTR_Gypsy 19854 20579 153 + . . scaffold38552 WUBlastX LTR_Gypsy-Cigr 19866 20381 351 + . . scaffold38552 WUBlastX LTR_Gypsy 19866 20480 245 + . . scaffold38552 WUBlastX LTR_Gypsy 20507 20671 48 + . . scaffold38552 WUBlastX LTR_Gypsy 20629 20898 107 + . . scaffold38552 WUBlastX LTR_Gypsy 21091 21132 22 + . . scaffold38552 WUBlastX LTR_Gypsy 25458 25499 21 + . . scaffold38552 WUBlastX LTR_Gypsy-Cigr 25760 26227 258 + . . scaffold38552 WUBlastX LTR_Gypsy 25760 26386 183 + . . scaffold38552 WUBlastX LTR_Gypsy 26242 26487 29 + . . scaffold38552 WUBlastX LTR_Gypsy 27276 27332 22 + . . scaffold38552 GLEAN promoter 29525 30524 0.99628 + . ID=CGI_10002838; scaffold38552 GLEAN mRNA 30525 37042 0.99628 + . ID=CGI_10002838; scaffold38552 GLEAN promoter 39163 40162 0.999674 + . ID=CGI_10002839; scaffold38552 GLEAN mRNA 40163 55847 0.999674 + . ID=CGI_10002839; scaffold38552 WUBlastX DNA_TcMar-Tc2 40759 41754 179 + . . scaffold38552 WUBlastX DNA_TcMar-Tc2 40930 41754 196 + . . scaffold38552 TRF Tandem_Repeat 56894 56949 112 + . . scaffold38558 TRF Tandem_Repeat 6540 6570 62 + . . scaffold38558 TRF Tandem_Repeat 14321 14617 522 + . . scaffold38558 TRF Tandem_Repeat 16045 16084 62 + . . scaffold38558 GLEAN promoter 16421 17420 0.843588 + . ID=CGI_10002829; scaffold38558 GLEAN mRNA 17421 26797 0.843588 + . ID=CGI_10002829; scaffold38558 TRF Tandem_Repeat 23265 23307 86 + . . scaffold38558 TRF Tandem_Repeat 25136 25200 130 + . . scaffold38558 GLEAN promoter 31403 32402 0.999624 + . ID=CGI_10002830; scaffold38558 GLEAN mRNA 32403 41151 0.999624 + . ID=CGI_10002830; scaffold38558 TRF Tandem_Repeat 34931 34982 104 + . . scaffold38558 TRF Tandem_Repeat 34982 35010 58 + . . scaffold38558 GLEAN mRNA 43828 46438 0.999414 - . ID=CGI_10002831; scaffold38558 GLEAN promoter 46439 47438 0.999414 - . ID=CGI_10002831; scaffold38558 TRF Tandem_Repeat 48081 48120 53 + . . scaffold38558 WUBlastX LINE_RTE-X 53299 54171 227 + . . scaffold38558 WUBlastX LINE_L1-Tx1 56358 56450 43 + . . scaffold38558 WUBlastX LINE_L1-Tx1 56450 56971 134 + . . scaffold38558 WUBlastX LINE_L1-Tx1 56450 57070 92 + . . scaffold38568 GLEAN promoter 1 69 0.863123 + . ID=CGI_10002861; scaffold38568 GLEAN mRNA 70 13489 0.863123 + . ID=CGI_10002861; scaffold38568 TRF Tandem_Repeat 4212 4292 85 + . . scaffold38568 TRF Tandem_Repeat 4213 4312 56 + . . scaffold38568 TRF Tandem_Repeat 4214 4347 73 + . . scaffold38568 TRF Tandem_Repeat 4214 4342 93 + . . scaffold38568 TRF Tandem_Repeat 4225 4308 71 + . . scaffold38568 TRF Tandem_Repeat 7683 7750 127 + . . scaffold38568 GLEAN mRNA 17408 21821 0.983686 - . ID=CGI_10002862; scaffold38568 TRF Tandem_Repeat 18725 18927 298 + . . scaffold38568 TRF Tandem_Repeat 20921 20967 62 + . . scaffold38568 GLEAN promoter 21822 22821 0.983686 - . ID=CGI_10002862; scaffold38568 GLEAN promoter 25375 26374 0.358708 + . ID=CGI_10002863; scaffold38568 GLEAN mRNA 26375 29782 0.358708 + . ID=CGI_10002863; scaffold38568 TRF Tandem_Repeat 29278 29315 76 + . . scaffold38568 GLEAN mRNA 31570 37192 1 - . ID=CGI_10002864; scaffold38568 GLEAN promoter 36384 37383 0.999995 + . ID=CGI_10002865; scaffold38568 GLEAN promoter 37193 38192 1 - . ID=CGI_10002864; scaffold38568 GLEAN mRNA 37384 40224 0.999995 + . ID=CGI_10002865; scaffold38568 WUBlastX LINE_RTE-X 41324 41635 36 - . . scaffold38568 TRF Tandem_Repeat 48496 48548 106 + . . scaffold38568 TRF Tandem_Repeat 49029 49076 96 + . . scaffold38568 TRF Tandem_Repeat 50458 50503 92 + . . scaffold38568 TRF Tandem_Repeat 51389 51432 79 + . . scaffold38568 TRF Tandem_Repeat 51988 52037 55 + . . scaffold38568 TRF Tandem_Repeat 52405 52445 73 + . . scaffold38568 TRF Tandem_Repeat 53634 53698 103 + . . scaffold38568 WUBlastX LINE_L2 53889 54674 56 + . . scaffold38568 WUBlastX LINE_L2 54048 55325 364 + . . scaffold38576 GLEAN promoter 914 1913 1 + . ID=CGI_10002840; scaffold38576 GLEAN mRNA 1914 4940 1 + . ID=CGI_10002840; scaffold38576 TRF Tandem_Repeat 5799 7543 2373 + . . scaffold38576 GLEAN mRNA 12099 20048 0.998789 - . ID=CGI_10002841; scaffold38576 TRF Tandem_Repeat 12907 13633 1063 + . . scaffold38576 TRF Tandem_Repeat 16673 16722 73 + . . scaffold38576 GLEAN promoter 20049 21048 0.998789 - . ID=CGI_10002841; scaffold38576 WUBlastX LINE_I 24698 24835 28 + . . scaffold38576 WUBlastX LINE_CR1 24820 24996 24 + . . scaffold38576 WUBlastX LINE_RTE-X 25307 25648 27 - . . scaffold38576 WUBlastX LINE_L2 25565 25870 48 + . . scaffold38576 WUBlastX LINE_L2 25649 25918 132 + . . scaffold38576 WUBlastX LINE_L2 25917 26432 361 + . . scaffold38576 WUBlastX LINE_L2 26432 26848 131 + . . scaffold38576 WUBlastX LINE_CR1-L2 38741 38824 26 + . . scaffold38576 WUBlastX LINE_CR1-L2 38787 39002 64 + . . scaffold38576 WUBlastX LINE_L2 38998 39792 317 + . . scaffold38576 WUBlastX DNA_hAT-Tip100 40258 40728 40 + . . scaffold38576 TRF Tandem_Repeat 53511 53541 62 + . . scaffold38576 GLEAN mRNA 54335 57355 1 - . ID=CGI_10002842; scaffold38576 GLEAN promoter 57356 57360 1 - . ID=CGI_10002842; scaffold38580 TRF Tandem_Repeat 12295 13147 491 + . . scaffold38580 TRF Tandem_Repeat 12295 13146 695 + . . scaffold38580 TRF Tandem_Repeat 14474 14710 316 + . . scaffold38580 TRF Tandem_Repeat 16634 16709 152 + . . scaffold38580 TRF Tandem_Repeat 17089 17138 84 + . . scaffold38580 TRF Tandem_Repeat 18751 19089 288 + . . scaffold38580 GLEAN promoter 28054 29053 0.999929 + . ID=CGI_10002880; scaffold38580 GLEAN mRNA 29054 29671 0.999929 + . ID=CGI_10002880; scaffold38580 TRF Tandem_Repeat 29705 29845 192 + . . scaffold38580 TRF Tandem_Repeat 46198 46289 103 + . . scaffold38580 WUBlastX DNA_TcMar-Marin 53482 53796 66 + . . scaffold38580 WUBlastX DNA_TcMar-Marin 53515 53766 113 + . . scaffold38580 WUBlastX DNA_Merlin 54030 54428 117 - . . scaffold38580 WUBlastX DNA_Merlin 54093 54437 179 - . . scaffold38580 WUBlastX DNA_Merlin 54406 54921 198 - . . scaffold38580 WUBlastX DNA_Merlin 54475 55002 96 - . . scaffold38580 WUBlastX DNA_TcMar-Marin 55262 55522 75 + . . scaffold38580 WUBlastX DNA_TcMar-Marin 55319 55528 153 + . . scaffold38580 WUBlastX DNA_TcMar-Marin 55655 56119 173 + . . scaffold38580 WUBlastX DNA_TcMar-Marin 55757 56122 207 + . . scaffold38596 GLEAN mRNA 2318 6158 0.999212 - . ID=CGI_10002859; scaffold38596 GLEAN promoter 6159 7158 0.999212 - . ID=CGI_10002859; scaffold38596 TRF Tandem_Repeat 15121 15172 104 + . . scaffold38596 TRF Tandem_Repeat 16553 16624 135 + . . scaffold38596 GLEAN promoter 29942 30941 1 + . ID=CGI_10002860; scaffold38596 GLEAN mRNA 30942 40704 1 + . ID=CGI_10002860; scaffold38596 TRF Tandem_Repeat 41050 41103 74 + . . scaffold38596 WUBlastX DNA_TcMar-Marin 46696 46776 20 + . . scaffold38596 WUBlastX DNA_TcMar-Marin 46859 46966 63 + . . scaffold38596 WUBlastX DNA_TcMar-Marin 46865 47020 34 + . . scaffold38596 WUBlastX LINE_L1-Tx1 47403 48116 26 - . . scaffold38596 TRF Tandem_Repeat 52283 52335 88 + . . scaffold386 TRF Tandem_Repeat 5679 5708 60 + . . scaffold386 WUBlastX LINE_L1-Tx1 15910 16491 66 - . . scaffold386 WUBlastX LINE_L1-Tx1 16482 16886 49 - . . scaffold386 WUBlastX LINE_L1-Tx1 16868 17470 241 - . . scaffold386 WUBlastX LINE_L1-Tx1 17490 18035 390 - . . scaffold386 WUBlastX LINE_L1 17490 18143 103 - . . scaffold386 WUBlastX LTR_Gypsy 44389 44607 33 + . . scaffold386 WUBlastX LTR_Gypsy 44586 45614 141 + . . scaffold386 WUBlastX LTR_Gypsy 45653 45925 25 + . . scaffold386 WUBlastX LTR_Gypsy 45701 45991 30 + . . scaffold386 TRF Tandem_Repeat 46519 46696 71 + . . scaffold386 WUBlastX LTR_Gypsy-Cigr 46703 47023 208 + . . scaffold386 WUBlastX LTR_Gypsy-Cigr 47008 49701 1755 + . . scaffold386 WUBlastX LTR_Copia 50196 50345 20 + . . scaffold386 TRF Tandem_Repeat 56298 56352 92 + . . scaffold386 TRF Tandem_Repeat 58713 58754 84 + . . scaffold386 TRF Tandem_Repeat 72346 72476 162 + . . scaffold386 TRF Tandem_Repeat 72476 72592 78 + . . scaffold386 GLEAN mRNA 81379 108874 0.997229 - . ID=CGI_10012681; scaffold386 WUBlastX DNA_TcMar-Marin 87102 87482 68 + . . scaffold386 WUBlastX DNA_TcMar-Marin 87207 87461 70 + . . scaffold386 GLEAN promoter 95577 96576 0.594428 + . ID=CGI_10012682; scaffold386 GLEAN mRNA 96577 98953 0.594428 + . ID=CGI_10012682; scaffold386 TRF Tandem_Repeat 98395 98444 100 + . . scaffold386 TRF Tandem_Repeat 100729 100785 80 + . . scaffold386 TRF Tandem_Repeat 100732 100785 65 + . . scaffold386 GLEAN promoter 101495 102494 0.999998 + . ID=CGI_10012683; scaffold386 GLEAN mRNA 102495 105214 0.999998 + . ID=CGI_10012683; scaffold386 GLEAN promoter 108875 109874 0.997229 - . ID=CGI_10012681; scaffold386 GLEAN promoter 110335 111334 0.999542 + . ID=CGI_10012684; scaffold386 GLEAN mRNA 111335 118497 0.999542 + . ID=CGI_10012684; scaffold386 GLEAN mRNA 120740 140701 0.566777 - . ID=CGI_10012685; scaffold386 TRF Tandem_Repeat 122586 122710 133 + . . scaffold386 TRF Tandem_Repeat 122617 122734 128 + . . scaffold386 TRF Tandem_Repeat 122736 122904 167 + . . scaffold386 TRF Tandem_Repeat 140511 140538 56 + . . scaffold386 GLEAN promoter 140702 141701 0.566777 - . ID=CGI_10012685; scaffold386 TRF Tandem_Repeat 154350 154387 76 + . . scaffold386 GLEAN promoter 157902 158901 0.911589 + . ID=CGI_10012686; scaffold386 GLEAN mRNA 158902 165146 0.911589 + . ID=CGI_10012686; scaffold386 TRF Tandem_Repeat 159758 159795 76 + . . scaffold386 WUBlastX LINE_RTE-X 166845 167225 85 + . . scaffold386 WUBlastX LINE_RTE-X 166911 167222 168 + . . scaffold386 WUBlastX LINE_RTE-X 166956 167273 40 + . . scaffold386 WUBlastX LINE_RTE-BovB 167203 167307 28 + . . scaffold386 WUBlastX LINE_RTE-X 167311 167424 46 + . . scaffold386 WUBlastX LINE_RTE-X 167314 167499 35 + . . scaffold386 WUBlastX LINE_RTE-X 167320 167388 49 + . . scaffold386 WUBlastX LINE_RTE-X 167323 167457 44 + . . scaffold386 WUBlastX LINE_RTE-X 168006 168206 32 + . . scaffold386 TRF Tandem_Repeat 169093 169150 100 + . . scaffold386 TRF Tandem_Repeat 169096 169149 65 + . . scaffold386 GLEAN mRNA 169266 187416 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 169527 169612 129 + . . scaffold386 TRF Tandem_Repeat 172495 172562 136 + . . scaffold386 TRF Tandem_Repeat 173124 173197 148 + . . scaffold386 TRF Tandem_Repeat 180700 180742 86 + . . scaffold386 TRF Tandem_Repeat 184803 184891 171 + . . scaffold386 TRF Tandem_Repeat 186436 186462 54 + . . scaffold386 TRF Tandem_Repeat 186506 186545 80 + . . scaffold386 GLEAN promoter 187417 188416 0.648491 - . ID=CGI_10012687; scaffold386 TRF Tandem_Repeat 189352 189435 55 + . . scaffold386 TRF Tandem_Repeat 189352 189431 70 + . . scaffold386 TRF Tandem_Repeat 189353 189397 90 + . . scaffold386 TRF Tandem_Repeat 189395 189436 61 + . . scaffold386 TRF Tandem_Repeat 190108 190158 102 + . . scaffold386 GLEAN promoter 190622 191621 0.986955 + . ID=CGI_10012688; scaffold386 GLEAN mRNA 191622 192813 0.986955 + . ID=CGI_10012688; scaffold386 WUBlastX DNA_Crypton 191976 192356 95 + . . scaffold386 TRF Tandem_Repeat 192760 192789 51 + . . scaffold386 WUBlastX LINE_L1-Tx1 193254 193916 155 + . . scaffold386 WUBlastX LTR_Pao 194203 194478 108 + . . scaffold386 WUBlastX LTR_Pao 194490 195038 292 + . . scaffold386 WUBlastX LTR_Pao 194894 195403 285 + . . scaffold386 WUBlastX LTR_Pao 194927 195763 257 + . . scaffold386 TRF Tandem_Repeat 204988 205038 59 + . . scaffold386 TRF Tandem_Repeat 207215 207262 78 + . . scaffold386 GLEAN mRNA 207482 239068 0.43817 - . ID=CGI_10012689; scaffold386 TRF Tandem_Repeat 209171 209348 71 + . . scaffold386 TRF Tandem_Repeat 210522 210573 104 + . . scaffold386 TRF Tandem_Repeat 210769 210794 52 + . . scaffold386 WUBlastX DNA_Kolobok-IS4 211376 211888 76 + . . scaffold386 WUBlastX DNA_IS4EU 211526 211885 90 + . . scaffold386 WUBlastX DNA_Kolobok-IS4 212543 213097 32 + . . scaffold386 WUBlastX DNA_IS4EU 212915 213151 44 + . . scaffold386 WUBlastX DNA_Kolobok-IS4 214396 215523 534 - . . scaffold386 WUBlastX DNA_Kolobok-IS4 216253 216513 54 - . . scaffold386 WUBlastX DNA_IS4EU 216286 216573 33 - . . scaffold386 TRF Tandem_Repeat 217085 217262 80 + . . scaffold386 TRF Tandem_Repeat 217134 217262 77 + . . scaffold386 GLEAN promoter 239069 240068 0.43817 - . ID=CGI_10012689; scaffold386 GLEAN mRNA 239349 239717 0.997286 - . ID=CGI_10012690; scaffold386 GLEAN promoter 239718 240717 0.997286 - . ID=CGI_10012690; scaffold386 TRF Tandem_Repeat 242737 243189 473 + . . scaffold386 TRF Tandem_Repeat 243138 243345 165 + . . scaffold386 TRF Tandem_Repeat 244386 244914 649 + . . scaffold386 TRF Tandem_Repeat 244921 245113 287 + . . scaffold386 GLEAN promoter 249643 250642 0.629198 + . ID=CGI_10012691; scaffold386 TRF Tandem_Repeat 249659 249716 116 + . . scaffold386 GLEAN mRNA 250643 254580 0.629198 + . ID=CGI_10012691; scaffold386 GLEAN mRNA 254590 284645 0.652172 - . ID=CGI_10012692; scaffold386 TRF Tandem_Repeat 258505 258554 100 + . . scaffold386 TRF Tandem_Repeat 261977 262420 304 + . . scaffold386 TRF Tandem_Repeat 264447 264475 58 + . . scaffold386 WUBlastX LTR_Gypsy 272617 273309 87 + . . scaffold386 TRF Tandem_Repeat 282227 282295 138 + . . scaffold386 TRF Tandem_Repeat 283956 283997 84 + . . scaffold386 GLEAN promoter 284085 285084 1 + . ID=CGI_10012694; scaffold386 GLEAN promoter 284646 285645 0.652172 - . ID=CGI_10012692; scaffold386 GLEAN mRNA 285085 289509 1 + . ID=CGI_10012694; scaffold386 TRF Tandem_Repeat 289676 289729 108 + . . scaffold386 GLEAN mRNA 293622 300040 0.481325 - . ID=CGI_10012695; scaffold386 GLEAN promoter 299882 300881 1 + . ID=CGI_10012696; scaffold386 GLEAN promoter 300041 301040 0.481325 - . ID=CGI_10012695; scaffold386 GLEAN mRNA 300882 313692 1 + . ID=CGI_10012696; scaffold386 GLEAN mRNA 318104 326130 1 - . ID=CGI_10012697; scaffold386 GLEAN promoter 326131 327130 1 - . ID=CGI_10012697; scaffold386 GLEAN mRNA 326709 335034 1 - . ID=CGI_10012698; scaffold386 TRF Tandem_Repeat 326949 327105 280 + . . scaffold386 TRF Tandem_Repeat 326958 327082 94 + . . scaffold386 TRF Tandem_Repeat 326971 327098 73 + . . scaffold386 TRF Tandem_Repeat 330018 330977 1394 + . . scaffold386 TRF Tandem_Repeat 331008 331047 64 + . . scaffold386 GLEAN promoter 335035 335180 1 - . ID=CGI_10012698; scaffold38608 TRF Tandem_Repeat 11435 11470 63 + . . scaffold38608 WUBlastX RC_Helitron 43765 44739 652 - . . scaffold38608 WUBlastX RC_Helitron 44709 46421 953 - . . scaffold38608 WUBlastX RC_Helitron 46490 47032 93 - . . scaffold38612 GLEAN promoter 1 131 1 + . ID=CGI_10002877; scaffold38612 GLEAN mRNA 132 1577 1 + . ID=CGI_10002877; scaffold38612 GLEAN promoter 1293 2292 1 + . ID=CGI_10002878; scaffold38612 GLEAN mRNA 2293 17490 1 + . ID=CGI_10002878; scaffold38612 GLEAN promoter 25278 26277 0.72551 + . ID=CGI_10002879; scaffold38612 GLEAN mRNA 26278 44194 0.72551 + . ID=CGI_10002879; scaffold38626 TRF Tandem_Repeat 428 475 53 + . . scaffold38626 TRF Tandem_Repeat 543 604 51 + . . scaffold38626 GLEAN mRNA 1736 6066 1 - . ID=CGI_10002866; scaffold38626 GLEAN promoter 6067 7066 1 - . ID=CGI_10002866; scaffold38626 GLEAN promoter 6145 7144 0.59015 + . ID=CGI_10002867; scaffold38626 GLEAN mRNA 7145 8797 0.59015 + . ID=CGI_10002867; scaffold38626 WUBlastX DNA_TcMar-Marin 10326 10544 34 - . . scaffold38626 TRF Tandem_Repeat 14659 15187 317 + . . scaffold38626 TRF Tandem_Repeat 16023 16295 449 + . . scaffold38626 GLEAN mRNA 19577 33145 1 - . ID=CGI_10002868; scaffold38626 WUBlastX LINE_CR1 27062 27424 46 - . . scaffold38626 WUBlastX LINE_CR1 27131 27427 156 - . . scaffold38626 WUBlastX LINE_CR1 27421 27912 143 - . . scaffold38626 WUBlastX LINE_CR1 27592 27912 145 - . . scaffold38626 WUBlastX LINE_CR1 27902 27976 27 - . . scaffold38626 GLEAN promoter 33146 34145 1 - . ID=CGI_10002868; scaffold38626 WUBlastX LINE_L1-Tx1 42617 43471 178 + . . scaffold38626 WUBlastX LINE_L1 42710 43405 249 + . . scaffold38626 WUBlastX LINE_CR1 43500 43958 68 + . . scaffold38626 WUBlastX LINE_RTE-X 43608 43964 110 + . . scaffold38626 WUBlastX LINE_RTE-X 43972 44712 104 + . . scaffold38626 WUBlastX LINE_RTE-X 44509 44751 92 + . . scaffold38626 WUBlastX LINE_L2 44753 45790 130 + . . scaffold38626 WUBlastX LINE_CR1-L2 44951 45841 478 + . . scaffold38626 WUBlastX LINE_L2 45882 46214 132 + . . scaffold38626 WUBlastX LINE_L2 47227 47556 93 + . . scaffold38626 GLEAN promoter 48644 49643 0.999415 + . ID=CGI_10002869; scaffold38626 GLEAN mRNA 49644 51086 0.999415 + . ID=CGI_10002869; scaffold38626 GLEAN mRNA 51911 57757 1 - . ID=CGI_10002870; scaffold38626 GLEAN promoter 57758 58203 1 - . ID=CGI_10002870; scaffold38638 TRF Tandem_Repeat 15657 15684 56 + . . scaffold38638 WUBlastX LINE_Penelope 32131 32517 61 - . . scaffold38638 WUBlastX LINE_Penelope 32481 32729 87 - . . scaffold38638 WUBlastX LINE_Penelope 32526 32729 97 - . . scaffold38638 WUBlastX LINE_Penelope 32550 32768 72 - . . scaffold38638 TRF Tandem_Repeat 38814 38860 94 + . . scaffold38638 GLEAN promoter 39198 40197 0.776787 + . ID=CGI_10002885; scaffold38638 GLEAN mRNA 40198 40566 0.776787 + . ID=CGI_10002885; scaffold38638 WUBlastX DNA_IS4EU 41499 42554 615 + . . scaffold38638 WUBlastX DNA_IS4EU 42577 42903 148 + . . scaffold38638 WUBlastX DNA_IS4EU 43413 43556 87 - . . scaffold38638 WUBlastX DNA_IS4EU 43559 44440 625 - . . scaffold38638 WUBlastX DNA_IS4EU 45349 45396 32 - . . scaffold38638 WUBlastX DNA_IS4EU 46405 46662 102 - . . scaffold38638 GLEAN promoter 51162 52161 0.889623 + . ID=CGI_10002886; scaffold38638 GLEAN mRNA 52162 56022 0.889623 + . ID=CGI_10002886; scaffold38638 WUBlastX LINE_L2 56499 56558 21 + . . scaffold38638 WUBlastX LINE_L2 56631 57086 127 + . . scaffold38638 WUBlastX LINE_L2 56694 57188 88 + . . scaffold38638 WUBlastX LINE_L2 57098 57313 47 + . . scaffold38638 WUBlastX LINE_L2 57119 57391 29 + . . scaffold38638 WUBlastX LINE_L2 57122 57277 49 + . . scaffold38650 TRF Tandem_Repeat 75 319 409 + . . scaffold38650 GLEAN promoter 675 1674 0.276198 + . ID=CGI_10002927; scaffold38650 GLEAN mRNA 1675 9338 0.276198 + . ID=CGI_10002927; scaffold38650 TRF Tandem_Repeat 5924 6055 114 + . . scaffold38650 TRF Tandem_Repeat 7585 7613 58 + . . scaffold38650 TRF Tandem_Repeat 9987 10012 52 + . . scaffold38650 TRF Tandem_Repeat 12135 12934 1050 + . . scaffold38650 TRF Tandem_Repeat 34923 36171 1783 + . . scaffold38650 TRF Tandem_Repeat 37392 37437 57 + . . scaffold38650 TRF Tandem_Repeat 37395 37436 50 + . . scaffold38650 TRF Tandem_Repeat 40944 41085 230 + . . scaffold38650 WUBlastX DNA_Maverick 42588 42974 115 - . . scaffold38650 WUBlastX DNA_Maverick 42657 42974 154 - . . scaffold38650 TRF Tandem_Repeat 45385 45435 75 + . . scaffold38650 WUBlastX DNA_Maverick 47225 47383 101 - . . scaffold38650 WUBlastX DNA_Maverick 47407 47514 82 - . . scaffold38650 WUBlastX DNA_Maverick 47538 47723 23 - . . scaffold38650 WUBlastX DNA_Maverick 47809 48099 95 - . . scaffold38650 WUBlastX DNA_Maverick 47941 48138 59 - . . scaffold38650 WUBlastX DNA_Maverick 48133 48330 100 - . . scaffold38650 WUBlastX LTR_Gypsy-Cigr 51045 51398 73 - . . scaffold38650 WUBlastX LTR_DIRS 53156 53551 206 - . . scaffold38650 WUBlastX LTR_DIRS 53264 53617 122 - . . scaffold38650 WUBlastX LTR_DIRS 53524 53661 66 - . . scaffold38650 WUBlastX LTR_DIRS 53682 53819 42 - . . scaffold38650 WUBlastX LINE_L1-Tx1 55006 55875 69 - . . scaffold38650 WUBlastX LINE_L1-Tx1 55874 56191 81 - . . scaffold38650 WUBlastX LINE_L1-Tx1 55937 56200 128 - . . scaffold38650 WUBlastX LINE_L1-Tx1 56193 56861 265 - . . scaffold38650 WUBlastX LINE_L1-Tx1 56851 57210 237 - . . scaffold38650 WUBlastX LINE_RTE-BovB 56896 57267 45 - . . scaffold38650 WUBlastX LINE_CR1 58601 59719 111 + . . scaffold38650 WUBlastX LINE_Jockey 58793 59734 186 + . . scaffold38654 TRF Tandem_Repeat 2516 2998 159 + . . scaffold38654 TRF Tandem_Repeat 2516 2987 215 + . . scaffold38654 TRF Tandem_Repeat 2517 3096 199 + . . scaffold38654 TRF Tandem_Repeat 2620 3107 241 + . . scaffold38654 TRF Tandem_Repeat 7315 7925 967 + . . scaffold38654 TRF Tandem_Repeat 7332 7984 218 + . . scaffold38654 TRF Tandem_Repeat 7435 8007 429 + . . scaffold38654 GLEAN promoter 10147 11146 0.994136 + . ID=CGI_10002902; scaffold38654 GLEAN mRNA 11147 22878 0.994136 + . ID=CGI_10002902; scaffold38654 TRF Tandem_Repeat 13848 13928 99 + . . scaffold38654 TRF Tandem_Repeat 13848 13918 81 + . . scaffold38654 TRF Tandem_Repeat 22490 22549 120 + . . scaffold38654 TRF Tandem_Repeat 32888 32912 50 + . . scaffold38654 WUBlastX LINE_Penelope 33332 33457 38 - . . scaffold38654 WUBlastX LINE_Penelope 33356 33766 82 - . . scaffold38654 WUBlastX LINE_Penelope 33658 34395 233 - . . scaffold38654 WUBlastX LINE_Penelope 33826 35340 260 - . . scaffold38654 WUBlastX LINE_Penelope 35333 35473 31 - . . scaffold38654 WUBlastX LINE_Penelope 35348 35428 44 - . . scaffold38654 WUBlastX LINE_Penelope 35348 35545 28 - . . scaffold38654 WUBlastX LINE_Penelope 35354 35455 35 - . . scaffold38654 WUBlastX LINE_Penelope 35786 36031 97 + . . scaffold38654 WUBlastX LINE_Penelope 35786 36136 45 + . . scaffold38654 TRF Tandem_Repeat 38933 38970 76 + . . scaffold38654 TRF Tandem_Repeat 41543 41670 109 + . . scaffold38654 TRF Tandem_Repeat 48859 48905 62 + . . scaffold38654 TRF Tandem_Repeat 50608 50661 108 + . . scaffold38654 TRF Tandem_Repeat 52370 52419 100 + . . scaffold38654 TRF Tandem_Repeat 53745 53803 118 + . . scaffold38654 TRF Tandem_Repeat 55225 55282 109 + . . scaffold38654 TRF Tandem_Repeat 56782 56815 68 + . . scaffold38654 TRF Tandem_Repeat 58682 58766 163 + . . scaffold38672 WUBlastX LTR_Gypsy 106 825 69 - . . scaffold38672 WUBlastX LTR_Gypsy 238 792 135 - . . scaffold38672 GLEAN promoter 2788 3787 0.99899 + . ID=CGI_10002887; scaffold38672 GLEAN mRNA 3788 17200 0.99899 + . ID=CGI_10002887; scaffold38672 WUBlastX LINE_L1-Tx1 7809 9515 986 - . . scaffold38672 TRF Tandem_Repeat 15863 15918 112 + . . scaffold38672 WUBlastX DNA_Kolobok 39217 39384 79 + . . scaffold38672 WUBlastX LTR_Gypsy 41551 42759 145 - . . scaffold38672 WUBlastX LTR_Gypsy 42226 42966 156 - . . scaffold38672 WUBlastX LTR_Gypsy-Cigr 42505 43053 134 - . . scaffold38672 TRF Tandem_Repeat 44521 44757 321 + . . scaffold38672 TRF Tandem_Repeat 44587 44812 151 + . . scaffold38672 TRF Tandem_Repeat 53789 53815 54 + . . scaffold38672 WUBlastX DNA_Sola 56285 56701 34 + . . scaffold38672 WUBlastX DNA_Merlin 57929 58348 80 + . . scaffold38672 WUBlastX DNA_Merlin 57929 58279 120 + . . scaffold38674 TRF Tandem_Repeat 1 26 52 + . . scaffold38674 TRF Tandem_Repeat 763 807 90 + . . scaffold38674 TRF Tandem_Repeat 841 1730 1155 + . . scaffold38674 TRF Tandem_Repeat 1060 1419 110 + . . scaffold38674 TRF Tandem_Repeat 1545 2271 351 + . . scaffold38674 TRF Tandem_Repeat 1717 2262 954 + . . scaffold38674 TRF Tandem_Repeat 1827 2147 181 + . . scaffold38674 WUBlastX LINE_L1-Tx1 4222 4386 34 + . . scaffold38674 TRF Tandem_Repeat 8553 8855 444 + . . scaffold38674 TRF Tandem_Repeat 10230 10254 50 + . . scaffold38674 GLEAN mRNA 11281 17360 1 - . ID=CGI_10002899; scaffold38674 TRF Tandem_Repeat 11725 12301 637 + . . scaffold38674 TRF Tandem_Repeat 11725 12301 707 + . . scaffold38674 TRF Tandem_Repeat 12830 13029 278 + . . scaffold38674 GLEAN promoter 17361 18360 1 - . ID=CGI_10002899; scaffold38674 GLEAN promoter 19545 20544 0.613255 + . ID=CGI_10002900; scaffold38674 GLEAN mRNA 20545 23527 0.613255 + . ID=CGI_10002900; scaffold38674 TRF Tandem_Repeat 21143 21191 57 + . . scaffold38674 TRF Tandem_Repeat 21147 21196 54 + . . scaffold38674 GLEAN promoter 25766 26765 0.701749 + . ID=CGI_10002901; scaffold38674 GLEAN mRNA 26766 38793 0.701749 + . ID=CGI_10002901; scaffold38674 TRF Tandem_Repeat 34897 34926 60 + . . scaffold38674 TRF Tandem_Repeat 46175 46205 62 + . . scaffold38674 WUBlastX LINE_L1-Tx1 49538 50011 70 - . . scaffold38674 WUBlastX LINE_L1-Tx1 49550 49900 87 - . . scaffold38674 WUBlastX LINE_L1-Tx1 50046 50387 55 - . . scaffold38674 WUBlastX LINE_L1-Tx1 50103 50444 54 - . . scaffold38674 WUBlastX LINE_L1-Tx1 50495 50629 41 - . . scaffold38674 TRF Tandem_Repeat 53572 53621 91 + . . scaffold38678 GLEAN mRNA 233 1096 1 - . ID=CGI_10002904; scaffold38678 WUBlastX DNA_IS4EU 248 1261 364 - . . scaffold38678 WUBlastX DNA_Kolobok-IS4 278 1021 413 - . . scaffold38678 GLEAN promoter 1097 2096 1 - . ID=CGI_10002904; scaffold38678 WUBlastX DNA_hAT-Tip100 2141 2317 50 - . . scaffold38678 GLEAN promoter 3292 4291 0.648527 + . ID=CGI_10002905; scaffold38678 GLEAN mRNA 4292 11864 0.648527 + . ID=CGI_10002905; scaffold38678 WUBlastX LINE_L2 16103 16288 87 - . . scaffold38678 WUBlastX LINE_CR1-L2 16297 16515 64 - . . scaffold38678 WUBlastX LINE_CR1-L2 16515 16655 38 - . . scaffold38678 WUBlastX LINE_CR1 16836 17684 45 - . . scaffold38678 WUBlastX LINE_CR1 17070 17387 113 - . . scaffold38678 WUBlastX LINE_CR1 17118 17684 182 - . . scaffold38678 WUBlastX LINE_CR1 17196 17792 139 - . . scaffold38678 WUBlastX LINE_Jockey 17686 17850 47 - . . scaffold38678 WUBlastX LINE_L2 17689 17967 40 - . . scaffold38678 GLEAN mRNA 18217 18576 0.997625 - . ID=CGI_10002906; scaffold38678 GLEAN promoter 18577 19576 0.997625 - . ID=CGI_10002906; scaffold38678 WUBlastX LINE_CR1-L2 47216 47671 91 - . . scaffold38678 WUBlastX LINE_CR1 47602 47727 36 - . . scaffold38678 WUBlastX LINE_L2 48083 48418 29 - . . scaffold38678 WUBlastX LINE_CR1 48164 48439 72 - . . scaffold38678 WUBlastX LINE_CR1 48218 48409 75 - . . scaffold38678 WUBlastX LINE_CR1 48409 48954 105 - . . scaffold38678 WUBlastX LINE_L2 48661 48936 125 - . . scaffold38678 WUBlastX LINE_CR1 48661 48993 124 - . . scaffold38678 WUBlastX LINE_L2 48670 49053 69 - . . scaffold38678 GLEAN mRNA 49314 52103 0.593383 - . ID=CGI_10002907; scaffold38678 GLEAN promoter 52104 53103 0.593383 - . ID=CGI_10002907; scaffold38686 GLEAN promoter 4430 5429 0.526728 + . ID=CGI_10002908; scaffold38686 GLEAN mRNA 5430 7129 0.526728 + . ID=CGI_10002908; scaffold38686 GLEAN mRNA 19449 30983 0.998274 - . ID=CGI_10002909; scaffold38686 GLEAN promoter 30348 31347 0.960221 + . ID=CGI_10002910; scaffold38686 GLEAN promoter 30984 31983 0.998274 - . ID=CGI_10002909; scaffold38686 GLEAN mRNA 31348 45412 0.960221 + . ID=CGI_10002910; scaffold38686 GLEAN promoter 57227 58226 0.759601 + . ID=CGI_10002911; scaffold38686 GLEAN mRNA 58227 58475 0.759601 + . ID=CGI_10002911; scaffold38688 GLEAN promoter 1 220 0.999998 + . ID=CGI_10002920; scaffold38688 GLEAN mRNA 221 19200 0.999998 + . ID=CGI_10002920; scaffold38688 GLEAN promoter 18537 19536 0.999676 + . ID=CGI_10002921; scaffold38688 GLEAN mRNA 19537 27918 0.999676 + . ID=CGI_10002921; scaffold38688 GLEAN mRNA 31793 52050 0.754426 - . ID=CGI_10002922; scaffold38688 GLEAN promoter 52051 53050 0.754426 - . ID=CGI_10002922; scaffold387 TRF Tandem_Repeat 1248 1315 127 + . . scaffold387 TRF Tandem_Repeat 4720 5651 1361 + . . scaffold387 GLEAN mRNA 10194 11657 0.999997 - . ID=CGI_10004496; scaffold387 GLEAN promoter 11658 12657 0.999997 - . ID=CGI_10004496; scaffold387 TRF Tandem_Repeat 11856 11896 82 + . . scaffold387 WUBlastX DNA_Sola 23319 23768 198 + . . scaffold387 WUBlastX DNA_Harbinger 24676 24798 55 + . . scaffold387 GLEAN promoter 26360 27359 0.998991 + . ID=CGI_10004497; scaffold387 GLEAN mRNA 27360 40673 0.998991 + . ID=CGI_10004497; scaffold387 WUBlastX LTR_Gypsy 28933 29073 106 - . . scaffold387 WUBlastX LTR_Gypsy 29058 29156 27 - . . scaffold387 WUBlastX LTR_Gypsy 33508 34287 477 - . . scaffold387 WUBlastX LTR_Gypsy 33688 34419 295 - . . scaffold387 WUBlastX LTR_Gypsy 35135 35368 55 - . . scaffold387 WUBlastX LTR_Gypsy 35171 35359 156 - . . scaffold387 WUBlastX LTR_Gypsy 35180 35461 50 - . . scaffold387 TRF Tandem_Repeat 35475 35501 54 + . . scaffold387 TRF Tandem_Repeat 37080 37107 56 + . . scaffold387 TRF Tandem_Repeat 37799 37828 60 + . . scaffold387 TRF Tandem_Repeat 39266 39319 72 + . . scaffold387 GLEAN mRNA 42932 43213 0.618186 - . ID=CGI_10004498; scaffold387 GLEAN promoter 43214 44213 0.618186 - . ID=CGI_10004498; scaffold387 WUBlastX LTR_Gypsy 43758 44039 74 - . . scaffold387 TRF Tandem_Repeat 48009 48050 68 + . . scaffold387 WUBlastX DNA_Sola 53633 53959 95 + . . scaffold387 GLEAN mRNA 57372 68765 0.758622 - . ID=CGI_10004500; scaffold387 TRF Tandem_Repeat 67668 68344 789 + . . scaffold387 GLEAN promoter 68766 69765 0.758622 - . ID=CGI_10004500; scaffold387 TRF Tandem_Repeat 70997 71422 672 + . . scaffold387 WUBlastX LINE_L2 78349 78450 27 - . . scaffold387 WUBlastX LINE_L2 78375 78713 119 - . . scaffold387 WUBlastX LINE_L2 78456 78713 156 - . . scaffold387 WUBlastX LINE_L2 78459 78821 109 - . . scaffold387 WUBlastX LINE_L2 78480 78998 65 - . . scaffold387 WUBlastX LTR_Gypsy 79826 80668 529 - . . scaffold387 WUBlastX DNA_IS4EU 95115 95357 120 + . . scaffold387 WUBlastX DNA_IS4EU 95699 96211 171 + . . scaffold387 WUBlastX DNA_IS4EU 95765 96199 243 + . . scaffold387 WUBlastX DNA_IS4EU 96101 96346 94 + . . scaffold387 WUBlastX DNA_IS4EU 96864 97250 84 - . . scaffold387 WUBlastX DNA_Kolobok-IS4 97044 97253 98 - . . scaffold38700 GLEAN promoter 4074 5073 1 + . ID=CGI_10002937; scaffold38700 GLEAN mRNA 5074 11032 1 + . ID=CGI_10002937; scaffold38700 GLEAN promoter 24638 25637 0.319391 + . ID=CGI_10002938; scaffold38700 GLEAN mRNA 25638 59123 0.319391 + . ID=CGI_10002938; scaffold38704 TRF Tandem_Repeat 1632 1663 50 + . . scaffold38704 TRF Tandem_Repeat 1806 1853 87 + . . scaffold38704 GLEAN promoter 6367 7366 0.983856 + . ID=CGI_10002939; scaffold38704 TRF Tandem_Repeat 6847 6904 116 + . . scaffold38704 TRF Tandem_Repeat 7237 7276 80 + . . scaffold38704 GLEAN mRNA 7367 10756 0.983856 + . ID=CGI_10002939; scaffold38704 TRF Tandem_Repeat 20146 20185 80 + . . scaffold38704 GLEAN promoter 34133 35132 0.971099 + . ID=CGI_10002940; scaffold38704 GLEAN mRNA 35133 43483 0.971099 + . ID=CGI_10002940; scaffold38704 TRF Tandem_Repeat 39791 39970 143 + . . scaffold38704 TRF Tandem_Repeat 39815 40112 297 + . . scaffold38704 WUBlastX LTR_Gypsy 53167 53376 53 - . . scaffold38704 WUBlastX LTR_Gypsy 53248 53388 57 - . . scaffold38704 WUBlastX LTR_Gypsy 53260 53376 67 - . . scaffold38704 WUBlastX LTR_Gypsy 53370 53465 44 - . . scaffold38714 GLEAN mRNA 33842 39634 1 - . ID=CGI_10002941; scaffold38714 TRF Tandem_Repeat 34703 34863 65 + . . scaffold38714 TRF Tandem_Repeat 34803 34890 77 + . . scaffold38714 TRF Tandem_Repeat 36617 37377 811 + . . scaffold38714 GLEAN promoter 39635 40634 1 - . ID=CGI_10002941; scaffold38714 TRF Tandem_Repeat 40816 40880 79 + . . scaffold38714 TRF Tandem_Repeat 40817 40879 87 + . . scaffold38714 TRF Tandem_Repeat 40818 40880 89 + . . scaffold38714 TRF Tandem_Repeat 40972 41005 50 + . . scaffold38714 TRF Tandem_Repeat 43471 43823 555 + . . scaffold38714 TRF Tandem_Repeat 44932 44981 100 + . . scaffold38714 WUBlastX LINE_RTE-X 51851 52129 98 - . . scaffold38714 WUBlastX LINE_RTE-X 51872 52177 25 - . . scaffold38736 WUBlastX LTR_Gypsy 18 905 83 - . . scaffold38736 WUBlastX LTR_Gypsy 252 995 138 - . . scaffold38736 WUBlastX LTR_Gypsy-Cigr 417 1016 144 - . . scaffold38736 WUBlastX LTR_Gypsy-Cigr 531 1016 161 - . . scaffold38736 GLEAN mRNA 4159 6262 1 - . ID=CGI_10002942; scaffold38736 GLEAN promoter 6263 7262 1 - . ID=CGI_10002942; scaffold38736 TRF Tandem_Repeat 6346 6434 99 + . . scaffold38736 TRF Tandem_Repeat 6349 6421 119 + . . scaffold38736 TRF Tandem_Repeat 13331 13374 52 + . . scaffold38736 GLEAN mRNA 34186 48260 0.811399 - . ID=CGI_10002943; scaffold38736 GLEAN promoter 48261 49260 0.811399 - . ID=CGI_10002943; scaffold38736 GLEAN promoter 49218 50217 1 + . ID=CGI_10002944; scaffold38736 GLEAN mRNA 50218 50844 1 + . ID=CGI_10002944; scaffold38736 WUBlastX DNA_Harbinger 50224 50367 65 + . . scaffold38736 WUBlastX DNA_Harbinger 50560 50781 103 + . . scaffold38736 WUBlastX DNA_Harbinger 50560 50829 81 + . . scaffold38736 WUBlastX DNA_Harbinger 51746 52009 195 - . . scaffold38736 WUBlastX DNA_Harbinger 52221 52916 282 - . . scaffold38736 WUBlastX DNA_Harbinger 52233 52823 370 - . . scaffold38736 WUBlastX LINE_L1 58345 58953 43 + . . scaffold38736 WUBlastX LINE_L1 58480 59097 223 + . . scaffold38736 WUBlastX LINE_RTE-X 59173 60030 239 + . . scaffold38750 GLEAN mRNA 123 2133 0.978184 - . ID=CGI_10002952; scaffold38750 GLEAN promoter 1403 2402 0.927797 + . ID=CGI_10002953; scaffold38750 GLEAN promoter 2134 3133 0.978184 - . ID=CGI_10002952; scaffold38750 GLEAN mRNA 2403 8066 0.927797 + . ID=CGI_10002953; scaffold38750 WUBlastX LINE_RTE-X 3734 3955 53 + . . scaffold38750 WUBlastX LINE_RTE-X 3948 4133 80 + . . scaffold38750 WUBlastX LINE_RTE-X 3957 4256 73 + . . scaffold38750 WUBlastX LINE_RTE-X 4459 4758 62 + . . scaffold38750 WUBlastX LINE_RTE-X 4462 4677 82 + . . scaffold38750 WUBlastX LINE_RTE-X 5763 6011 87 - . . scaffold38750 GLEAN promoter 7083 8082 0.999995 + . ID=CGI_10002954; scaffold38750 GLEAN mRNA 8083 11328 0.999995 + . ID=CGI_10002954; scaffold38750 TRF Tandem_Repeat 12180 12230 102 + . . scaffold38750 GLEAN mRNA 12382 13335 1 - . ID=CGI_10002955; scaffold38750 GLEAN promoter 13336 14335 1 - . ID=CGI_10002955; scaffold38750 GLEAN mRNA 13710 15778 0.651135 - . ID=CGI_10002956; scaffold38750 GLEAN promoter 14091 15090 0.999995 + . ID=CGI_10002957; scaffold38750 GLEAN mRNA 15091 19690 0.999995 + . ID=CGI_10002957; scaffold38750 GLEAN promoter 15779 16778 0.651135 - . ID=CGI_10002956; scaffold38750 WUBlastX LINE_RTE-X 16879 17373 21 + . . scaffold38750 WUBlastX LINE_RTE-X 17041 17307 106 + . . scaffold38750 GLEAN promoter 21964 22963 0.593389 + . ID=CGI_10002958; scaffold38750 GLEAN mRNA 22964 23827 0.593389 + . ID=CGI_10002958; scaffold38750 TRF Tandem_Repeat 39880 39918 78 + . . scaffold38750 TRF Tandem_Repeat 43323 43368 51 + . . scaffold38750 TRF Tandem_Repeat 45753 45816 128 + . . scaffold38750 TRF Tandem_Repeat 53638 53682 90 + . . scaffold38750 TRF Tandem_Repeat 56926 56965 71 + . . scaffold38750 TRF Tandem_Repeat 58009 58190 355 + . . scaffold38750 TRF Tandem_Repeat 59905 60196 457 + . . scaffold38752 TRF Tandem_Repeat 961 1264 437 + . . scaffold38752 GLEAN mRNA 1672 15456 0.650722 - . ID=CGI_10002945; scaffold38752 TRF Tandem_Repeat 3622 4712 1666 + . . scaffold38752 GLEAN promoter 4725 5724 0.993907 + . ID=CGI_10002946; scaffold38752 TRF Tandem_Repeat 4918 4955 58 + . . scaffold38752 GLEAN mRNA 5725 16402 0.993907 + . ID=CGI_10002946; scaffold38752 WUBlastX LINE_RTE-X 8992 9168 86 - . . scaffold38752 WUBlastX LINE_RTE-X 9001 9288 69 - . . scaffold38752 GLEAN promoter 15457 16456 0.650722 - . ID=CGI_10002945; scaffold38752 GLEAN promoter 17546 18545 0.999942 + . ID=CGI_10002947; scaffold38752 GLEAN mRNA 18546 35922 0.999942 + . ID=CGI_10002947; scaffold38752 TRF Tandem_Repeat 26790 26837 96 + . . scaffold38752 GLEAN promoter 36323 37322 1 + . ID=CGI_10002948; scaffold38752 GLEAN mRNA 37323 38175 1 + . ID=CGI_10002948; scaffold38752 GLEAN mRNA 39209 50222 0.998173 - . ID=CGI_10002949; scaffold38752 TRF Tandem_Repeat 41763 41813 102 + . . scaffold38752 GLEAN promoter 48325 49324 1 + . ID=CGI_10002950; scaffold38752 TRF Tandem_Repeat 48426 48467 75 + . . scaffold38752 GLEAN mRNA 49325 50423 1 + . ID=CGI_10002950; scaffold38752 GLEAN promoter 50223 51222 0.998173 - . ID=CGI_10002949; scaffold38752 GLEAN promoter 51074 52073 0.990448 + . ID=CGI_10002951; scaffold38752 GLEAN mRNA 52074 59052 0.990448 + . ID=CGI_10002951; scaffold38756 TRF Tandem_Repeat 2150 2276 173 + . . scaffold38756 WUBlastX DNA_Sola 3583 3954 74 - . . scaffold38756 TRF Tandem_Repeat 4288 4321 50 + . . scaffold38756 TRF Tandem_Repeat 14489 14606 140 + . . scaffold38756 WUBlastX DNA_hAT-Tip100 20936 21145 139 + . . scaffold38756 WUBlastX LINE_L1-Tx1 34741 35268 68 + . . scaffold38756 WUBlastX LINE_L1-Tx1 35289 35642 72 + . . scaffold38756 TRF Tandem_Repeat 37279 37468 143 + . . scaffold38756 TRF Tandem_Repeat 37281 37478 145 + . . scaffold38756 TRF Tandem_Repeat 37283 37468 146 + . . scaffold38756 TRF Tandem_Repeat 43951 43977 54 + . . scaffold38756 GLEAN promoter 48354 49353 0.544535 + . ID=CGI_10002967; scaffold38756 GLEAN mRNA 49354 51429 0.544535 + . ID=CGI_10002967; scaffold38756 TRF Tandem_Repeat 57728 58841 1395 + . . scaffold38764 WUBlastX LINE_L1-Tx1 1102 1542 43 - . . scaffold38764 TRF Tandem_Repeat 1975 2009 70 + . . scaffold38764 TRF Tandem_Repeat 2492 2528 65 + . . scaffold38764 WUBlastX LINE_RTE-X 46386 46712 36 + . . scaffold38764 TRF Tandem_Repeat 49407 49454 60 + . . scaffold38774 WUBlastX DNA_Sola 7523 7726 40 + . . scaffold38774 WUBlastX DNA_Sola 8563 8772 42 + . . scaffold38774 WUBlastX DNA_Sola 8599 8757 55 + . . scaffold38774 WUBlastX DNA_P 25061 25186 79 + . . scaffold38774 WUBlastX DNA_P 25442 25537 50 + . . scaffold38774 WUBlastX DNA_P 25756 25863 60 + . . scaffold38774 WUBlastX DNA_P 26468 26605 44 + . . scaffold38774 TRF Tandem_Repeat 28364 28410 94 + . . scaffold38774 TRF Tandem_Repeat 28741 28775 70 + . . scaffold38774 GLEAN mRNA 30675 34773 0.908953 - . ID=CGI_10002974; scaffold38774 TRF Tandem_Repeat 31045 31099 55 + . . scaffold38774 TRF Tandem_Repeat 31107 31908 1143 + . . scaffold38774 GLEAN promoter 34774 35773 0.908953 - . ID=CGI_10002974; scaffold38780 GLEAN mRNA 2671 16848 0.959487 - . ID=CGI_10002959; scaffold38780 WUBlastX DNA_Merlin 2838 3248 101 + . . scaffold38780 WUBlastX DNA_PiggyBac 6612 6794 63 - . . scaffold38780 WUBlastX DNA_PiggyBac 6648 6794 70 - . . scaffold38780 WUBlastX DNA_PiggyBac 6745 7221 63 - . . scaffold38780 WUBlastX LTR_Gypsy 12162 12605 81 + . . scaffold38780 WUBlastX LTR_Gypsy 13364 13633 27 + . . scaffold38780 WUBlastX LTR_Gypsy 13376 13555 34 + . . scaffold38780 TRF Tandem_Repeat 15871 15896 52 + . . scaffold38780 GLEAN promoter 16849 17848 0.959487 - . ID=CGI_10002959; scaffold38780 GLEAN promoter 20652 21651 0.999988 + . ID=CGI_10002960; scaffold38780 GLEAN mRNA 21652 22077 0.999988 + . ID=CGI_10002960; scaffold38780 WUBlastX DNA_Kolobok 21925 22074 79 + . . scaffold38780 TRF Tandem_Repeat 33118 33872 1075 + . . scaffold38780 TRF Tandem_Repeat 36614 37358 1206 + . . scaffold38780 TRF Tandem_Repeat 39349 39438 67 + . . scaffold38780 TRF Tandem_Repeat 52804 52842 78 + . . scaffold38780 TRF Tandem_Repeat 58270 58304 52 + . . scaffold38784 WUBlastX LTR_Gypsy 1926 2447 49 + . . scaffold38784 WUBlastX LTR_Gypsy 2013 2495 75 + . . scaffold38784 WUBlastX LTR_Gypsy 2079 2432 77 + . . scaffold38784 WUBlastX LTR_Pao 4755 4979 38 + . . scaffold38784 WUBlastX LTR_Pao 4794 5117 32 + . . scaffold38784 WUBlastX LTR_Pao 5186 8731 1879 + . . scaffold38784 WUBlastX LTR_Pao 8739 9302 207 + . . scaffold38784 WUBlastX LINE_L1-Tx1 9287 9592 208 - . . scaffold38784 WUBlastX LINE_L1-Tx1 9308 9652 151 - . . scaffold38784 WUBlastX LINE_L1 9338 9727 70 - . . scaffold38784 WUBlastX LTR_Gypsy 13010 14029 52 + . . scaffold38784 WUBlastX LTR_Gypsy 13220 13999 387 + . . scaffold38784 WUBlastX LTR_Gypsy 13283 14200 80 + . . scaffold38784 WUBlastX LTR_Gypsy 14290 14535 82 + . . scaffold38784 WUBlastX LINE_L2 17423 17674 27 - . . scaffold38784 WUBlastX LINE_L1 17477 17704 63 - . . scaffold38784 WUBlastX LINE_L1-Tx1 17543 17704 97 - . . scaffold38784 WUBlastX LINE_L1-Tx1 17698 17841 97 - . . scaffold38784 WUBlastX LINE_L1-Tx1 17841 18326 209 - . . scaffold38784 WUBlastX LINE_L1-Tx1 17853 18413 95 - . . scaffold38784 WUBlastX LINE_L1-Tx1 18274 18540 48 - . . scaffold38784 WUBlastX LINE_L1-Tx1 18283 18438 50 - . . scaffold38784 WUBlastX LINE_L1 18316 18675 32 - . . scaffold38784 WUBlastX LTR_Pao 24787 25308 28 + . . scaffold38784 WUBlastX LTR_Pao 25090 25329 32 + . . scaffold38784 WUBlastX LTR_Pao 25132 25977 127 + . . scaffold38784 WUBlastX LTR_Pao 25645 25977 154 + . . scaffold38784 WUBlastX LTR_Pao 25991 27730 775 + . . scaffold38784 WUBlastX LTR_Pao 27739 28749 745 + . . scaffold38784 GLEAN promoter 29305 30304 0.503077 + . ID=CGI_10002994; scaffold38784 GLEAN mRNA 30305 58600 0.503077 + . ID=CGI_10002994; scaffold38784 TRF Tandem_Repeat 40688 40820 162 + . . scaffold38784 TRF Tandem_Repeat 40964 40992 58 + . . scaffold38784 TRF Tandem_Repeat 41186 41273 126 + . . scaffold38784 TRF Tandem_Repeat 41313 41626 373 + . . scaffold38784 WUBlastX DNA_Academ 42999 43343 167 - . . scaffold388 GLEAN mRNA 2807 17244 0.55746 - . ID=CGI_10020447; scaffold388 TRF Tandem_Repeat 11996 12047 72 + . . scaffold388 TRF Tandem_Repeat 14744 14774 53 + . . scaffold388 GLEAN promoter 16607 17606 0.665745 + . ID=CGI_10020448; scaffold388 GLEAN promoter 17245 18244 0.55746 - . ID=CGI_10020447; scaffold388 GLEAN mRNA 17607 24192 0.665745 + . ID=CGI_10020448; scaffold388 GLEAN promoter 27943 28942 0.874562 + . ID=CGI_10020449; scaffold388 GLEAN mRNA 28943 32392 0.874562 + . ID=CGI_10020449; scaffold388 GLEAN mRNA 36139 40208 0.999676 - . ID=CGI_10020450; scaffold388 GLEAN promoter 39600 40599 0.99883 + . ID=CGI_10020451; scaffold388 GLEAN promoter 40209 41208 0.999676 - . ID=CGI_10020450; scaffold388 GLEAN mRNA 40600 45521 0.99883 + . ID=CGI_10020451; scaffold388 GLEAN mRNA 49556 51168 0.999071 - . ID=CGI_10020452; scaffold388 GLEAN promoter 51169 52168 0.999071 - . ID=CGI_10020452; scaffold388 GLEAN promoter 53406 54405 0.991247 + . ID=CGI_10020453; scaffold388 GLEAN mRNA 54406 57064 0.991247 + . ID=CGI_10020453; scaffold388 TRF Tandem_Repeat 66231 66312 150 + . . scaffold388 GLEAN promoter 71178 72177 1 + . ID=CGI_10020454; scaffold388 GLEAN mRNA 72178 80946 1 + . ID=CGI_10020454; scaffold388 TRF Tandem_Repeat 73178 73945 568 + . . scaffold388 GLEAN mRNA 84508 104123 0.99935 - . ID=CGI_10020455; scaffold388 GLEAN promoter 94508 95507 0.531609 + . ID=CGI_10020456; scaffold388 GLEAN mRNA 95508 98186 0.531609 + . ID=CGI_10020456; scaffold388 TRF Tandem_Repeat 99379 99852 588 + . . scaffold388 TRF Tandem_Repeat 99401 99734 160 + . . scaffold388 TRF Tandem_Repeat 99414 99847 155 + . . scaffold388 TRF Tandem_Repeat 102266 102931 933 + . . scaffold388 GLEAN promoter 104124 105123 0.99935 - . ID=CGI_10020455; scaffold388 GLEAN promoter 104205 105204 1 + . ID=CGI_10020457; scaffold388 GLEAN mRNA 105205 115226 1 + . ID=CGI_10020457; scaffold388 TRF Tandem_Repeat 113921 114720 1505 + . . scaffold388 GLEAN mRNA 117133 120759 0.999661 - . ID=CGI_10020458; scaffold388 GLEAN promoter 120760 121759 0.999661 - . ID=CGI_10020458; scaffold388 GLEAN promoter 122828 123827 1 + . ID=CGI_10020459; scaffold388 GLEAN mRNA 123828 125074 1 + . ID=CGI_10020459; scaffold388 GLEAN promoter 125551 126550 0.99428 + . ID=CGI_10020460; scaffold388 GLEAN mRNA 126551 132383 0.99428 + . ID=CGI_10020460; scaffold388 TRF Tandem_Repeat 128940 128992 72 + . . scaffold388 TRF Tandem_Repeat 133701 133751 102 + . . scaffold388 GLEAN promoter 166480 167479 0.999661 + . ID=CGI_10020461; scaffold388 GLEAN mRNA 167480 167866 0.999661 + . ID=CGI_10020461; scaffold388 GLEAN mRNA 171840 181992 1 - . ID=CGI_10020462; scaffold388 GLEAN promoter 181993 182992 1 - . ID=CGI_10020462; scaffold388 GLEAN mRNA 183168 198249 1 - . ID=CGI_10020463; scaffold388 TRF Tandem_Repeat 187906 188435 627 + . . scaffold388 TRF Tandem_Repeat 187906 188391 836 + . . scaffold388 TRF Tandem_Repeat 187906 188391 836 + . . scaffold388 TRF Tandem_Repeat 192747 192806 95 + . . scaffold388 GLEAN promoter 198250 199249 1 - . ID=CGI_10020463; scaffold388 TRF Tandem_Repeat 198605 198655 102 + . . scaffold388 TRF Tandem_Repeat 198780 198814 70 + . . scaffold388 GLEAN mRNA 202036 211737 0.620634 - . ID=CGI_10020464; scaffold388 TRF Tandem_Repeat 205580 205651 137 + . . scaffold388 GLEAN promoter 210826 211825 0.996237 + . ID=CGI_10020465; scaffold388 GLEAN promoter 211738 212737 0.620634 - . ID=CGI_10020464; scaffold388 GLEAN mRNA 211826 226750 0.996237 + . ID=CGI_10020465; scaffold388 TRF Tandem_Repeat 212018 212078 52 + . . scaffold388 TRF Tandem_Repeat 215537 215584 51 + . . scaffold388 GLEAN mRNA 216874 221663 0.662264 - . ID=CGI_10020466; scaffold388 WUBlastX LINE_RTE-X 220523 220732 34 - . . scaffold388 WUBlastX LINE_RTE-X 220613 220750 53 - . . scaffold388 WUBlastX LINE_RTE-X 220619 220732 55 - . . scaffold388 GLEAN promoter 221664 222663 0.662264 - . ID=CGI_10020466; scaffold388 TRF Tandem_Repeat 221778 221834 114 + . . scaffold388 GLEAN mRNA 222054 224005 0.543118 - . ID=CGI_10020467; scaffold388 GLEAN promoter 224006 225005 0.543118 - . ID=CGI_10020467; scaffold388 GLEAN mRNA 229331 235177 0.430499 - . ID=CGI_10020468; scaffold388 GLEAN promoter 235178 236177 0.430499 - . ID=CGI_10020468; scaffold388 GLEAN promoter 237360 238359 0.998496 + . ID=CGI_10020469; scaffold388 GLEAN mRNA 238360 244015 0.998496 + . ID=CGI_10020469; scaffold388 GLEAN promoter 247911 248910 0.59015 + . ID=CGI_10020470; scaffold388 GLEAN mRNA 248911 249642 0.59015 + . ID=CGI_10020470; scaffold388 TRF Tandem_Repeat 252945 253000 85 + . . scaffold388 GLEAN mRNA 253386 255455 1 - . ID=CGI_10020471; scaffold388 GLEAN promoter 255456 256455 1 - . ID=CGI_10020471; scaffold388 GLEAN promoter 263648 264647 0.999647 + . ID=CGI_10020472; scaffold388 GLEAN mRNA 264648 287159 0.999647 + . ID=CGI_10020472; scaffold388 TRF Tandem_Repeat 269209 269250 50 + . . scaffold388 GLEAN mRNA 270944 331971 0.126469 - . ID=CGI_10020473; scaffold388 WUBlastX DNA_Academ 279080 279139 28 + . . scaffold388 TRF Tandem_Repeat 291157 291192 72 + . . scaffold388 TRF Tandem_Repeat 323219 323262 52 + . . scaffold388 GLEAN promoter 331972 332971 0.126469 - . ID=CGI_10020473; scaffold388 GLEAN mRNA 335014 409574 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 339001 339070 140 + . . scaffold388 TRF Tandem_Repeat 339068 339100 57 + . . scaffold388 TRF Tandem_Repeat 347731 347764 52 + . . scaffold388 TRF Tandem_Repeat 376090 377026 977 + . . scaffold388 TRF Tandem_Repeat 377646 378543 818 + . . scaffold388 TRF Tandem_Repeat 378712 378754 59 + . . scaffold388 TRF Tandem_Repeat 389508 389532 50 + . . scaffold388 TRF Tandem_Repeat 401198 401253 76 + . . scaffold388 TRF Tandem_Repeat 401201 401251 50 + . . scaffold388 GLEAN promoter 409575 410574 0.933244 - . ID=CGI_10020474; scaffold388 TRF Tandem_Repeat 410149 410183 70 + . . scaffold388 WUBlastX LINE_L2 414152 414424 56 + . . scaffold388 TRF Tandem_Repeat 417804 417869 132 + . . scaffold388 WUBlastX DNA_P 425270 425377 39 - . . scaffold388 WUBlastX DNA_P 425484 425648 40 - . . scaffold388 WUBlastX DNA_TcMar-Marin 429503 429646 52 - . . scaffold388 WUBlastX DNA_TcMar-Marin 429660 429902 45 - . . scaffold388 TRF Tandem_Repeat 432656 432694 53 + . . scaffold388 TRF Tandem_Repeat 441174 441208 70 + . . scaffold388 TRF Tandem_Repeat 462306 462348 61 + . . scaffold388 TRF Tandem_Repeat 469169 469259 122 + . . scaffold388 TRF Tandem_Repeat 474893 474919 54 + . . scaffold388 TRF Tandem_Repeat 488073 488995 1274 + . . scaffold388 TRF Tandem_Repeat 494946 495054 73 + . . scaffold388 TRF Tandem_Repeat 494956 495040 71 + . . scaffold388 TRF Tandem_Repeat 494968 495059 82 + . . scaffold388 TRF Tandem_Repeat 501635 501666 64 + . . scaffold388 TRF Tandem_Repeat 511733 511813 162 + . . scaffold388 TRF Tandem_Repeat 513592 513635 88 + . . scaffold388 TRF Tandem_Repeat 514424 514453 60 + . . scaffold388 TRF Tandem_Repeat 514984 515020 74 + . . scaffold388 TRF Tandem_Repeat 515168 515195 56 + . . scaffold388 TRF Tandem_Repeat 515911 515971 115 + . . scaffold388 GLEAN mRNA 518709 522669 0.999611 - . ID=CGI_10020475; scaffold388 GLEAN promoter 522670 523669 0.999611 - . ID=CGI_10020475; scaffold388 TRF Tandem_Repeat 525293 525331 78 + . . scaffold388 TRF Tandem_Repeat 526358 526390 66 + . . scaffold388 TRF Tandem_Repeat 527323 527367 90 + . . scaffold388 WUBlastX LINE_RTE-X 528580 528729 33 - . . scaffold388 WUBlastX LINE_RTE-X 531855 532316 30 + . . scaffold388 WUBlastX LINE_RTE-X 531963 532253 60 + . . scaffold388 WUBlastX LINE_RTE-X 532038 532247 63 + . . scaffold388 WUBlastX LINE_RTE-X 532101 532277 73 + . . scaffold388 WUBlastX LINE_RTE-X 532101 532391 55 + . . scaffold388 TRF Tandem_Repeat 533823 533869 76 + . . scaffold388 TRF Tandem_Repeat 533827 533876 82 + . . scaffold388 TRF Tandem_Repeat 533880 534703 1158 + . . scaffold388 GLEAN promoter 536015 537014 1 + . ID=CGI_10020476; scaffold388 GLEAN mRNA 537015 539614 1 + . ID=CGI_10020476; scaffold388 GLEAN mRNA 542348 552294 0.999999 - . ID=CGI_10020477; scaffold388 GLEAN promoter 552295 553294 0.999999 - . ID=CGI_10020477; scaffold388 WUBlastX LINE_RTE-X 553507 553662 20 + . . scaffold388 WUBlastX LINE_RTE-X 553692 553967 60 + . . scaffold388 WUBlastX LINE_RTE-X 553791 553967 89 + . . scaffold388 WUBlastX LINE_RTE-X 553809 554033 83 + . . scaffold388 GLEAN mRNA 557083 561603 0.999676 - . ID=CGI_10020478; scaffold388 GLEAN promoter 561033 562032 0.999051 + . ID=CGI_10020479; scaffold388 GLEAN promoter 561604 562603 0.999676 - . ID=CGI_10020478; scaffold388 GLEAN mRNA 562033 570034 0.999051 + . ID=CGI_10020479; scaffold388 TRF Tandem_Repeat 564094 564194 73 + . . scaffold388 TRF Tandem_Repeat 564112 564175 83 + . . scaffold388 TRF Tandem_Repeat 564265 564294 51 + . . scaffold388 TRF Tandem_Repeat 564314 564343 53 + . . scaffold388 TRF Tandem_Repeat 566358 566431 139 + . . scaffold388 TRF Tandem_Repeat 568157 568423 182 + . . scaffold388 TRF Tandem_Repeat 568296 568553 135 + . . scaffold388 GLEAN mRNA 573296 573809 0.256443 - . ID=CGI_10020480; scaffold388 GLEAN promoter 573810 574809 0.256443 - . ID=CGI_10020480; scaffold388 GLEAN promoter 574764 575763 0.992331 + . ID=CGI_10020481; scaffold388 GLEAN mRNA 575764 581000 0.992331 + . ID=CGI_10020481; scaffold388 TRF Tandem_Repeat 587872 587914 86 + . . scaffold388 GLEAN promoter 589528 590527 0.987603 + . ID=CGI_10020482; scaffold388 GLEAN mRNA 590528 595260 0.987603 + . ID=CGI_10020482; scaffold388 GLEAN promoter 597368 598367 0.99778 + . ID=CGI_10020483; scaffold388 GLEAN mRNA 598368 618240 0.99778 + . ID=CGI_10020483; scaffold388 TRF Tandem_Repeat 619772 619817 92 + . . scaffold388 GLEAN mRNA 625845 630344 1 - . ID=CGI_10020484; scaffold388 GLEAN promoter 630345 631344 1 - . ID=CGI_10020484; scaffold388 TRF Tandem_Repeat 630655 630714 95 + . . scaffold388 WUBlastX LINE_Rex-Babar 631572 631931 36 + . . scaffold388 WUBlastX LINE_CR1-L2 631713 631970 80 + . . scaffold388 WUBlastX LINE_CR1-L2 631752 631928 86 + . . scaffold388 WUBlastX LINE_L2 631921 632226 170 + . . scaffold388 WUBlastX LINE_CR1-L2 631954 632277 127 + . . scaffold388 TRF Tandem_Repeat 632306 632423 75 + . . scaffold388 TRF Tandem_Repeat 632307 632418 62 + . . scaffold388 TRF Tandem_Repeat 633265 633337 62 + . . scaffold388 TRF Tandem_Repeat 633271 633370 64 + . . scaffold388 TRF Tandem_Repeat 633272 633363 123 + . . scaffold388 WUBlastX LINE_L2 633436 633936 140 + . . scaffold388 TRF Tandem_Repeat 641488 641628 129 + . . scaffold388 TRF Tandem_Repeat 646338 646379 84 + . . scaffold38804 WUBlastX LINE_RTE-X 11045 11491 37 - . . scaffold38804 WUBlastX LINE_RTE-X 11246 11467 40 - . . scaffold38804 WUBlastX LINE_RTE-X 11285 11458 71 - . . scaffold38804 TRF Tandem_Repeat 17820 17913 98 + . . scaffold38804 TRF Tandem_Repeat 18143 18230 115 + . . scaffold38804 GLEAN mRNA 25060 25782 1 - . ID=CGI_10002975; scaffold38804 GLEAN promoter 25783 26782 1 - . ID=CGI_10002975; scaffold38804 GLEAN mRNA 25991 34532 0.371949 - . ID=CGI_10002976; scaffold38804 TRF Tandem_Repeat 26216 26307 91 + . . scaffold38804 TRF Tandem_Repeat 27274 27299 52 + . . scaffold38804 WUBlastX LINE_CR1-L2 32015 32281 51 - . . scaffold38804 WUBlastX LINE_CR1 32441 32500 25 - . . scaffold38804 GLEAN promoter 34533 35532 0.371949 - . ID=CGI_10002976; scaffold38804 GLEAN promoter 34893 35892 1 + . ID=CGI_10002977; scaffold38804 GLEAN mRNA 35893 36096 1 + . ID=CGI_10002977; scaffold38804 GLEAN promoter 42355 43354 1 + . ID=CGI_10002978; scaffold38804 GLEAN mRNA 43355 44152 1 + . ID=CGI_10002978; scaffold38804 WUBlastX LTR_DIRS 44444 44890 173 + . . scaffold38804 TRF Tandem_Repeat 45474 47076 3143 + . . scaffold38804 TRF Tandem_Repeat 45474 47076 2411 + . . scaffold38804 TRF Tandem_Repeat 45627 47036 2029 + . . scaffold38804 WUBlastX LTR_Gypsy 49141 53124 3292 - . . scaffold38804 WUBlastX DNA_TcMar-Tc1 56077 56241 28 + . . scaffold38804 WUBlastX DNA_TcMar-Tc1 56224 56340 56 + . . scaffold38804 WUBlastX DNA_TcMar-Tc1 56224 56421 42 + . . scaffold38816 GLEAN promoter 1 21 0.919622 + . ID=CGI_10002990; scaffold38816 GLEAN mRNA 22 18573 0.919622 + . ID=CGI_10002990; scaffold38816 GLEAN promoter 19232 20231 0.733495 + . ID=CGI_10002991; scaffold38816 GLEAN mRNA 20232 20990 0.733495 + . ID=CGI_10002991; scaffold38816 GLEAN mRNA 25101 41849 0.999999 - . ID=CGI_10002992; scaffold38816 GLEAN promoter 41850 42849 0.999999 - . ID=CGI_10002992; scaffold38816 GLEAN mRNA 50228 56108 0.999999 - . ID=CGI_10002993; scaffold38816 GLEAN promoter 56109 57108 0.999999 - . ID=CGI_10002993; scaffold38818 GLEAN mRNA 384 5562 0.804944 - . ID=CGI_10002979; scaffold38818 GLEAN promoter 5563 6562 0.804944 - . ID=CGI_10002979; scaffold38818 GLEAN promoter 20910 21909 0.374418 + . ID=CGI_10002980; scaffold38818 GLEAN mRNA 21910 22977 0.374418 + . ID=CGI_10002980; scaffold38818 GLEAN promoter 36355 37354 0.999938 + . ID=CGI_10002981; scaffold38818 GLEAN mRNA 37355 45248 0.999938 + . ID=CGI_10002981; scaffold38818 GLEAN mRNA 47566 49503 1 - . ID=CGI_10002982; scaffold38818 GLEAN promoter 49504 50503 1 - . ID=CGI_10002982; scaffold38818 GLEAN promoter 50435 51434 0.998274 + . ID=CGI_10002983; scaffold38818 GLEAN mRNA 51435 61024 0.998274 + . ID=CGI_10002983; scaffold38822 GLEAN mRNA 229 9168 0.999998 - . ID=CGI_10003013; scaffold38822 TRF Tandem_Repeat 1502 1583 137 + . . scaffold38822 TRF Tandem_Repeat 3502 3539 76 + . . scaffold38822 TRF Tandem_Repeat 7291 7370 128 + . . scaffold38822 WUBlastX LTR_Ngaro 8362 8772 76 + . . scaffold38822 WUBlastX LTR_Ngaro 8374 8712 85 + . . scaffold38822 GLEAN promoter 9169 10168 0.999998 - . ID=CGI_10003013; scaffold38822 TRF Tandem_Repeat 10454 10516 126 + . . scaffold38822 WUBlastX DNA_Harbinger 33846 34031 35 - . . scaffold38822 TRF Tandem_Repeat 37862 38774 1163 + . . scaffold38822 TRF Tandem_Repeat 37862 38775 906 + . . scaffold38822 TRF Tandem_Repeat 45099 45137 78 + . . scaffold38822 GLEAN mRNA 46535 48347 0.993907 - . ID=CGI_10003014; scaffold38822 GLEAN promoter 48348 49347 0.993907 - . ID=CGI_10003014; scaffold38822 WUBlastX DNA_Harbinger 56294 56368 27 + . . scaffold38822 WUBlastX DNA_Harbinger 56447 56548 21 + . . scaffold38822 WUBlastX DNA_Harbinger 56477 56605 57 + . . scaffold38822 WUBlastX DNA_Harbinger 56574 56732 121 + . . scaffold38822 WUBlastX LINE_RTE-X 59025 59402 80 + . . scaffold38824 GLEAN promoter 1 113 0.412295 + . ID=CGI_10003005; scaffold38824 GLEAN mRNA 114 13691 0.412295 + . ID=CGI_10003005; scaffold38824 GLEAN mRNA 13659 18400 0.792982 - . ID=CGI_10003006; scaffold38824 GLEAN promoter 18401 19400 0.792982 - . ID=CGI_10003006; scaffold38824 WUBlastX LINE_RTE-X 21494 21823 20 - . . scaffold38824 WUBlastX LINE_RTE-BovB 21650 21781 21 - . . scaffold38824 WUBlastX LINE_RTE-BovB 21837 22055 34 - . . scaffold38824 WUBlastX LINE_RTE-X 22171 22221 20 - . . scaffold38824 WUBlastX LINE_RTE-X 22196 22402 48 - . . scaffold38824 TRF Tandem_Repeat 23178 23239 124 + . . scaffold38824 TRF Tandem_Repeat 30568 30720 80 + . . scaffold38824 GLEAN promoter 32305 33304 1 + . ID=CGI_10003007; scaffold38824 GLEAN mRNA 33305 37612 1 + . ID=CGI_10003007; scaffold38824 GLEAN promoter 38920 39919 1 + . ID=CGI_10003008; scaffold38824 GLEAN mRNA 39920 49731 1 + . ID=CGI_10003008; scaffold38824 TRF Tandem_Repeat 40945 40988 52 + . . scaffold38824 TRF Tandem_Repeat 42555 42590 72 + . . scaffold38828 GLEAN mRNA 1610 1984 1 - . ID=CGI_10002997; scaffold38828 GLEAN promoter 1985 2984 1 - . ID=CGI_10002997; scaffold38828 TRF Tandem_Repeat 2746 2799 108 + . . scaffold38828 TRF Tandem_Repeat 4121 4163 86 + . . scaffold38828 TRF Tandem_Repeat 4544 4592 71 + . . scaffold38828 TRF Tandem_Repeat 4546 4594 62 + . . scaffold38828 TRF Tandem_Repeat 4873 4906 68 + . . scaffold38828 TRF Tandem_Repeat 5573 5714 117 + . . scaffold38828 TRF Tandem_Repeat 5610 5707 144 + . . scaffold38828 GLEAN promoter 7935 8934 1 + . ID=CGI_10002998; scaffold38828 GLEAN mRNA 8935 11078 1 + . ID=CGI_10002998; scaffold38828 TRF Tandem_Repeat 11912 12266 152 + . . scaffold38828 TRF Tandem_Repeat 11987 12208 222 + . . scaffold38828 TRF Tandem_Repeat 11989 12266 260 + . . scaffold38828 TRF Tandem_Repeat 12703 12728 52 + . . scaffold38828 GLEAN mRNA 14375 27722 0.444192 - . ID=CGI_10002999; scaffold38828 TRF Tandem_Repeat 18955 19174 361 + . . scaffold38828 TRF Tandem_Repeat 19666 19773 162 + . . scaffold38828 GLEAN promoter 27723 28722 0.444192 - . ID=CGI_10002999; scaffold38828 TRF Tandem_Repeat 29236 29282 94 + . . scaffold38828 GLEAN promoter 30835 31834 0.998504 + . ID=CGI_10003000; scaffold38828 GLEAN mRNA 31835 37853 0.998504 + . ID=CGI_10003000; scaffold38828 WUBlastX LTR_ERV1 33023 33556 62 + . . scaffold38828 GLEAN mRNA 39878 61528 0.999985 - . ID=CGI_10003001; scaffold38828 TRF Tandem_Repeat 60947 60997 52 + . . scaffold38828 TRF Tandem_Repeat 60963 60992 51 + . . scaffold38828 GLEAN promoter 61529 61600 0.999985 - . ID=CGI_10003001; scaffold38848 WUBlastX LINE_L2 28969 29115 28 - . . scaffold38848 WUBlastX LINE_CR1-L2 29021 29236 47 - . . scaffold38848 WUBlastX LINE_L2 29057 29368 41 - . . scaffold38848 WUBlastX LINE_L2 29057 29251 73 - . . scaffold38848 WUBlastX LINE_L2 29111 29242 74 - . . scaffold38848 WUBlastX LINE_L2 29114 29287 69 - . . scaffold38848 TRF Tandem_Repeat 37786 37886 168 + . . scaffold38848 TRF Tandem_Repeat 39463 39642 185 + . . scaffold38848 TRF Tandem_Repeat 39525 39633 89 + . . scaffold38848 TRF Tandem_Repeat 50598 50622 50 + . . scaffold38848 WUBlastX DNA_TcMar-Tc1 53972 54079 42 - . . scaffold38848 WUBlastX DNA_TcMar-Tc1 54066 54602 177 - . . scaffold38848 WUBlastX DNA_TcMar-Tc1 54464 54772 52 - . . scaffold38848 WUBlastX DNA_TcMar-Tc1 54614 54808 43 - . . scaffold38848 TRF Tandem_Repeat 58600 58650 52 + . . scaffold38848 TRF Tandem_Repeat 59014 59065 104 + . . scaffold38848 TRF Tandem_Repeat 60243 60296 63 + . . scaffold38848 TRF Tandem_Repeat 61230 61613 429 + . . scaffold38854 GLEAN mRNA 2170 17086 0.993765 - . ID=CGI_10003010; scaffold38854 TRF Tandem_Repeat 11216 11259 88 + . . scaffold38854 GLEAN promoter 16499 17498 0.835209 + . ID=CGI_10003011; scaffold38854 GLEAN promoter 17087 18086 0.993765 - . ID=CGI_10003010; scaffold38854 GLEAN mRNA 17499 20462 0.835209 + . ID=CGI_10003011; scaffold38854 WUBlastX LINE_L2 17582 17728 20 + . . scaffold38854 WUBlastX LINE_L1-Tx1 18115 18603 237 + . . scaffold38854 WUBlastX LINE_L1-Tx1 18573 18755 61 + . . scaffold38854 WUBlastX LINE_L1-Tx1 18758 18883 29 + . . scaffold38854 WUBlastX LINE_L1-Tx1 18767 18844 33 + . . scaffold38854 WUBlastX DNA_Harbinger 19353 19715 102 + . . scaffold38854 WUBlastX DNA_Harbinger 20567 20884 67 - . . scaffold38854 WUBlastX DNA_Harbinger 20666 20863 72 - . . scaffold38854 WUBlastX DNA_Harbinger 20696 20866 85 - . . scaffold38854 WUBlastX DNA_Harbinger 20850 21533 351 - . . scaffold38854 WUBlastX DNA_Harbinger 21360 21566 29 - . . scaffold38854 WUBlastX LINE_L1 22867 23061 51 + . . scaffold38854 TRF Tandem_Repeat 24990 25040 50 + . . scaffold38854 GLEAN mRNA 27679 32695 0.651134 - . ID=CGI_10003012; scaffold38854 WUBlastX LTR_Gypsy 31547 31867 151 + . . scaffold38854 WUBlastX LTR_Gypsy 31550 31927 132 + . . scaffold38854 GLEAN promoter 32696 33695 0.651134 - . ID=CGI_10003012; scaffold38854 WUBlastX LTR_Gypsy 33024 33167 30 + . . scaffold38854 WUBlastX LTR_Gypsy 33066 33233 44 + . . scaffold38854 WUBlastX LTR_Gypsy 33090 33296 42 + . . scaffold38854 WUBlastX LTR_Gypsy 33280 33936 382 + . . scaffold38854 WUBlastX LTR_Gypsy 33707 34147 86 + . . scaffold38854 WUBlastX LTR_Gypsy 34034 34168 34 + . . scaffold38854 WUBlastX LTR_Gypsy 34985 35146 20 + . . scaffold38854 WUBlastX LTR_Gypsy 35051 35146 34 + . . scaffold38854 WUBlastX LTR_Gypsy 35495 35521 22 + . . scaffold38854 WUBlastX LTR_Gypsy 35541 35621 33 + . . scaffold38854 WUBlastX LTR_Gypsy 35621 35941 225 + . . scaffold38854 WUBlastX LTR_Gypsy 35893 36426 166 + . . scaffold38854 WUBlastX LTR_Gypsy 35956 36321 208 + . . scaffold38854 WUBlastX LTR_Gypsy 36344 36448 57 + . . scaffold38854 WUBlastX DNA_TcMar-Tc1 50040 50513 78 - . . scaffold38854 WUBlastX DNA_TcMar-Tc1 50488 50646 29 - . . scaffold38854 WUBlastX DNA_TcMar-Tc1 50578 50931 51 - . . scaffold38854 TRF Tandem_Repeat 62042 62076 70 + . . scaffold38856 GLEAN mRNA 2003 8696 0.999572 - . ID=CGI_10003017; scaffold38856 GLEAN promoter 8697 9696 0.999572 - . ID=CGI_10003017; scaffold38856 GLEAN mRNA 14472 15640 0.986185 - . ID=CGI_10003019; scaffold38856 GLEAN promoter 15641 16640 0.986185 - . ID=CGI_10003019; scaffold38856 GLEAN mRNA 38980 39645 0.77613 - . ID=CGI_10003020; scaffold38856 GLEAN promoter 39646 40645 0.77613 - . ID=CGI_10003020; scaffold38864 TRF Tandem_Repeat 2353 2393 82 + . . scaffold38864 TRF Tandem_Repeat 6576 6617 84 + . . scaffold38864 WUBlastX LINE_CR1 9975 10661 54 - . . scaffold38864 WUBlastX LINE_CR1 9990 10469 339 - . . scaffold38864 TRF Tandem_Repeat 12225 12633 638 + . . scaffold38864 TRF Tandem_Repeat 16190 16225 72 + . . scaffold38864 TRF Tandem_Repeat 16227 16429 120 + . . scaffold38864 TRF Tandem_Repeat 18880 18960 155 + . . scaffold38864 WUBlastX LINE_L2 19411 19737 86 - . . scaffold38864 GLEAN promoter 31123 32122 0.999372 + . ID=CGI_10003015; scaffold38864 GLEAN mRNA 32123 32365 0.999372 + . ID=CGI_10003015; scaffold38864 WUBlastX LINE_RTE-X 33107 33997 281 - . . scaffold38864 WUBlastX LINE_RTE-X 34011 34319 194 - . . scaffold38864 WUBlastX LINE_L2 34050 34373 68 - . . scaffold38864 WUBlastX LINE_RTE-BovB 34059 34505 61 - . . scaffold38864 WUBlastX LTR_DIRS 34794 34910 48 + . . scaffold38864 WUBlastX LTR_DIRS 34809 34895 72 + . . scaffold38864 WUBlastX LTR_DIRS 36320 36649 159 + . . scaffold38864 WUBlastX LTR_DIRS 36380 36694 181 + . . scaffold38864 WUBlastX DNA_hAT-Tip100 39890 40033 29 + . . scaffold38864 WUBlastX DNA_hAT-Tip100 40235 40837 58 + . . scaffold38864 WUBlastX DNA_hAT-Tip100 40331 40813 127 + . . scaffold38864 WUBlastX DNA_hAT-Tip100 40445 40837 250 + . . scaffold38864 WUBlastX DNA_hAT-Tip100 40828 41118 188 + . . scaffold38864 WUBlastX DNA_hAT-Tip100 41081 41854 535 + . . scaffold38864 GLEAN mRNA 45163 45599 0.999995 - . ID=CGI_10003016; scaffold38864 GLEAN promoter 45600 46599 0.999995 - . ID=CGI_10003016; scaffold38864 TRF Tandem_Repeat 49243 49962 1081 + . . scaffold38864 WUBlastX DNA_TcMar-Marin 53669 53863 39 + . . scaffold38864 WUBlastX DNA_TcMar-Marin 53711 53839 46 + . . scaffold38864 TRF Tandem_Repeat 58025 58056 55 + . . scaffold38876 TRF Tandem_Repeat 5575 5617 86 + . . scaffold38876 WUBlastX DNA_hAT-hATw 8583 10007 485 - . . scaffold38876 TRF Tandem_Repeat 22958 22983 52 + . . scaffold38876 WUBlastX LTR_Gypsy 26040 26423 66 + . . scaffold38876 WUBlastX LTR_Gypsy 26046 26627 46 + . . scaffold38876 WUBlastX LTR_Gypsy 26133 26486 57 + . . scaffold38876 WUBlastX LTR_Gypsy 26772 27434 27 + . . scaffold38876 WUBlastX LTR_Gypsy 27051 27377 39 + . . scaffold38876 WUBlastX LTR_Gypsy 27108 27638 74 + . . scaffold38876 WUBlastX LTR_Gypsy 27623 28126 45 + . . scaffold38876 WUBlastX LTR_Gypsy-Cigr 27830 28564 538 + . . scaffold38876 WUBlastX LTR_Gypsy-Cigr 28495 29868 558 + . . scaffold38876 WUBlastX LTR_Gypsy-Cigr 29870 30664 341 + . . scaffold38876 GLEAN promoter 30001 31000 0.945662 + . ID=CGI_10003027; scaffold38876 GLEAN mRNA 31001 32849 0.945662 + . ID=CGI_10003027; scaffold38876 WUBlastX LTR_Gypsy 31253 31381 25 + . . scaffold38876 WUBlastX LTR_Pao 43160 45436 960 + . . scaffold38876 WUBlastX LTR_Pao 45433 46107 656 + . . scaffold38876 WUBlastX LTR_Pao 46044 46133 53 + . . scaffold38876 WUBlastX LTR_Pao 46124 46960 207 + . . scaffold38876 WUBlastX LTR_Pao 46145 46852 542 + . . scaffold38876 WUBlastX LTR_Pao 46857 47033 108 + . . scaffold38876 WUBlastX LTR_Pao 47023 47649 253 + . . scaffold38876 WUBlastX LTR_Pao 47137 47661 527 + . . scaffold38876 WUBlastX LTR_Pao 47670 48161 376 + . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 56451 57197 258 - . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 57649 57765 101 - . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 58036 58164 109 - . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 58152 58472 133 - . . scaffold38876 WUBlastX LINE_L1-Tx1 58613 59302 86 - . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 59528 59677 35 - . . scaffold38876 WUBlastX LTR_Gypsy 59591 59695 54 - . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 59730 60317 108 - . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 60296 60511 120 - . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 60347 60511 160 - . . scaffold38876 WUBlastX LTR_Gypsy-Troyk 60514 60849 263 - . . scaffold38882 GLEAN promoter 1 403 0.999993 + . ID=CGI_10003021; scaffold38882 TRF Tandem_Repeat 160 249 171 + . . scaffold38882 GLEAN mRNA 404 9924 0.999993 + . ID=CGI_10003021; scaffold38882 TRF Tandem_Repeat 13893 13924 64 + . . scaffold38882 TRF Tandem_Repeat 18277 18368 159 + . . scaffold38882 TRF Tandem_Repeat 18579 18615 74 + . . scaffold38882 TRF Tandem_Repeat 20045 20087 77 + . . scaffold38882 TRF Tandem_Repeat 20489 20520 64 + . . scaffold38882 TRF Tandem_Repeat 21232 21268 74 + . . scaffold38882 TRF Tandem_Repeat 26336 26383 96 + . . scaffold38882 WUBlastX DNA_TcMar-m44 44965 45858 544 + . . scaffold38884 GLEAN promoter 1 763 0.879481 + . ID=CGI_10003002; scaffold38884 GLEAN mRNA 764 12686 0.879481 + . ID=CGI_10003002; scaffold38884 TRF Tandem_Repeat 17679 17747 138 + . . scaffold38884 GLEAN promoter 17691 18690 0.962986 + . ID=CGI_10003003; scaffold38884 GLEAN mRNA 18691 23727 0.962986 + . ID=CGI_10003003; scaffold38884 TRF Tandem_Repeat 22118 22173 85 + . . scaffold38884 TRF Tandem_Repeat 25232 25343 61 + . . scaffold38884 TRF Tandem_Repeat 25708 26127 172 + . . scaffold38884 TRF Tandem_Repeat 26150 26225 64 + . . scaffold38884 WUBlastX LINE_RTE-X 31685 31900 46 + . . scaffold38884 WUBlastX LINE_RTE-X 31697 31840 56 + . . scaffold38884 TRF Tandem_Repeat 36617 36664 96 + . . scaffold38884 GLEAN mRNA 44613 50381 1 - . ID=CGI_10003004; scaffold38884 WUBlastX LTR_DIRS 45866 46876 220 + . . scaffold38884 WUBlastX LTR_DIRS 45866 46405 241 + . . scaffold38884 WUBlastX LTR_DIRS 46854 47921 688 + . . scaffold38884 WUBlastX LTR_DIRS 47899 48540 359 + . . scaffold38884 WUBlastX LTR_DIRS 48548 49297 538 + . . scaffold38884 WUBlastX DNA?_Crypton? 49300 49533 57 + . . scaffold38884 WUBlastX LTR_DIRS 49339 49539 149 + . . scaffold38884 GLEAN promoter 50382 51381 1 - . ID=CGI_10003004; scaffold38884 TRF Tandem_Repeat 61686 61725 80 + . . scaffold38898 WUBlastX LTR_Ngaro 2388 2597 134 - . . scaffold38898 WUBlastX LTR_Ngaro 2603 3361 276 - . . scaffold38898 WUBlastX LTR_Ngaro 3286 3558 156 - . . scaffold38898 WUBlastX LTR_Ngaro 3551 4099 321 - . . scaffold38898 WUBlastX LTR_Ngaro 4065 4841 207 - . . scaffold38898 WUBlastX LTR_Ngaro 4329 4889 252 - . . scaffold38898 WUBlastX LTR_Ngaro 5199 5351 84 - . . scaffold38898 TRF Tandem_Repeat 15292 15580 344 + . . scaffold38898 TRF Tandem_Repeat 15292 15580 359 + . . scaffold38898 TRF Tandem_Repeat 15293 15582 451 + . . scaffold38898 GLEAN promoter 15301 16300 0.999911 + . ID=CGI_10003028; scaffold38898 TRF Tandem_Repeat 15724 15760 65 + . . scaffold38898 GLEAN mRNA 16301 23752 0.999911 + . ID=CGI_10003028; scaffold38898 WUBlastX DNA_Maverick 24027 24251 59 + . . scaffold38898 WUBlastX DNA_Maverick 24132 24251 62 + . . scaffold38898 WUBlastX DNA_Maverick 24296 24448 63 + . . scaffold38898 WUBlastX DNA_Maverick 24296 24505 57 + . . scaffold38898 GLEAN promoter 24739 25738 0.999953 + . ID=CGI_10003029; scaffold38898 GLEAN mRNA 25739 26491 0.999953 + . ID=CGI_10003029; scaffold38898 GLEAN mRNA 27488 27673 0.776557 - . ID=CGI_10003030; scaffold38898 GLEAN promoter 27674 28673 0.776557 - . ID=CGI_10003030; scaffold389 GLEAN mRNA 664 6207 0.990448 - . ID=CGI_10005516; scaffold389 GLEAN promoter 6208 7207 0.990448 - . ID=CGI_10005516; scaffold389 GLEAN mRNA 6965 7210 1 - . ID=CGI_10005517; scaffold389 GLEAN promoter 7211 8210 1 - . ID=CGI_10005517; scaffold389 TRF Tandem_Repeat 10962 11558 597 + . . scaffold389 TRF Tandem_Repeat 34519 34573 83 + . . scaffold389 GLEAN promoter 37220 38219 1 + . ID=CGI_10005518; scaffold389 GLEAN mRNA 38220 39744 1 + . ID=CGI_10005518; scaffold389 TRF Tandem_Repeat 41167 41239 101 + . . scaffold389 TRF Tandem_Repeat 46785 46837 72 + . . scaffold389 TRF Tandem_Repeat 69706 69734 51 + . . scaffold389 GLEAN mRNA 72390 75430 1 - . ID=CGI_10005519; scaffold389 GLEAN promoter 75431 76430 1 - . ID=CGI_10005519; scaffold389 TRF Tandem_Repeat 77069 77098 60 + . . scaffold389 WUBlastX DNA_TcMar-Tc1 78884 79057 23 - . . scaffold389 WUBlastX DNA_TcMar-Marin 78947 79144 44 - . . scaffold389 WUBlastX DNA_TcMar-Tc1 79054 79503 130 - . . scaffold389 WUBlastX DNA_TcMar-Tc1 79069 79617 73 - . . scaffold389 GLEAN mRNA 80003 84331 0.544741 - . ID=CGI_10005520; scaffold389 GLEAN promoter 84332 85331 0.544741 - . ID=CGI_10005520; scaffold389 GLEAN mRNA 84391 93717 0.999797 - . ID=CGI_10005521; scaffold389 TRF Tandem_Repeat 86193 86249 114 + . . scaffold389 TRF Tandem_Repeat 86275 86300 52 + . . scaffold389 GLEAN promoter 93718 94717 0.999797 - . ID=CGI_10005521; scaffold389 GLEAN mRNA 97670 109402 1 - . ID=CGI_10005522; scaffold389 TRF Tandem_Repeat 102692 102980 533 + . . scaffold389 GLEAN promoter 109403 110402 1 - . ID=CGI_10005522; scaffold389 TRF Tandem_Repeat 110779 110846 136 + . . scaffold389 WUBlastX LINE_RTE-X 117861 118022 37 + . . scaffold389 GLEAN promoter 121509 122508 0.617816 + . ID=CGI_10005524; scaffold389 GLEAN mRNA 121511 127384 0.803007 - . ID=CGI_10005523; scaffold389 GLEAN mRNA 122509 122670 0.617816 + . ID=CGI_10005524; scaffold389 TRF Tandem_Repeat 123697 123746 100 + . . scaffold389 GLEAN promoter 127385 128384 0.803007 - . ID=CGI_10005523; scaffold38900 WUBlastX DNA_Harbinger 1438 1596 66 - . . scaffold38900 GLEAN mRNA 4144 21771 0.999939 - . ID=CGI_10003039; scaffold38900 WUBlastX DNA_Harbinger 18349 18528 55 - . . scaffold38900 WUBlastX DNA_Harbinger 21619 21777 66 - . . scaffold38900 GLEAN promoter 21772 22771 0.999939 - . ID=CGI_10003039; scaffold38900 GLEAN mRNA 23600 25818 0.998945 - . ID=CGI_10003040; scaffold38900 GLEAN promoter 25819 26818 0.998945 - . ID=CGI_10003040; scaffold38900 WUBlastX LTR_Pao 44016 44099 28 + . . scaffold38900 WUBlastX LTR_Pao 44098 44253 50 + . . scaffold38900 GLEAN mRNA 46553 49675 0.811602 - . ID=CGI_10003041; scaffold38900 WUBlastX DNA_Harbinger 48942 49109 36 - . . scaffold38900 TRF Tandem_Repeat 49284 49338 110 + . . scaffold38900 GLEAN promoter 49676 50675 0.811602 - . ID=CGI_10003041; scaffold38900 GLEAN promoter 51846 52845 1 + . ID=CGI_10003042; scaffold38900 GLEAN mRNA 52846 57511 1 + . ID=CGI_10003042; scaffold38900 GLEAN mRNA 59369 61582 1 - . ID=CGI_10003043; scaffold38900 TRF Tandem_Repeat 60430 60467 76 + . . scaffold38900 GLEAN promoter 61583 62582 1 - . ID=CGI_10003043; scaffold38902 GLEAN mRNA 6284 14106 0.999676 - . ID=CGI_10003092; scaffold38902 GLEAN promoter 14107 15106 0.999676 - . ID=CGI_10003092; scaffold38902 GLEAN promoter 16563 17562 1 + . ID=CGI_10003093; scaffold38902 GLEAN mRNA 17563 19047 1 + . ID=CGI_10003093; scaffold38902 GLEAN promoter 23080 24079 1 + . ID=CGI_10003094; scaffold38902 GLEAN mRNA 24080 30117 1 + . ID=CGI_10003094; scaffold38902 GLEAN promoter 61525 62524 1 + . ID=CGI_10003095; scaffold38902 GLEAN mRNA 62525 63341 1 + . ID=CGI_10003095; scaffold38904 GLEAN mRNA 280 729 0.593387 - . ID=CGI_10003046; scaffold38904 GLEAN promoter 730 1729 0.593387 - . ID=CGI_10003046; scaffold38904 GLEAN promoter 10663 11662 0.828496 + . ID=CGI_10003047; scaffold38904 GLEAN mRNA 11663 13189 0.828496 + . ID=CGI_10003047; scaffold38904 WUBlastX RC_Helitron 18386 18844 37 - . . scaffold38904 TRF Tandem_Repeat 19918 20058 129 + . . scaffold38904 TRF Tandem_Repeat 20998 21111 115 + . . scaffold38904 GLEAN mRNA 21184 27002 0.495502 - . ID=CGI_10003048; scaffold38904 WUBlastX LTR_Ngaro 22264 22503 32 + . . scaffold38904 WUBlastX LTR_Ngaro 22374 23183 148 + . . scaffold38904 WUBlastX LTR_Ngaro 22506 23189 216 + . . scaffold38904 GLEAN promoter 27003 28002 0.495502 - . ID=CGI_10003048; scaffold38904 TRF Tandem_Repeat 30593 30633 64 + . . scaffold38904 TRF Tandem_Repeat 35438 35494 73 + . . scaffold38904 WUBlastX RC_Helitron 39933 42611 620 - . . scaffold38904 WUBlastX RC_Helitron 42748 42963 41 - . . scaffold38904 WUBlastX RC_Helitron 42802 42954 103 - . . scaffold38904 WUBlastX RC_Helitron 42947 43450 309 - . . scaffold38904 WUBlastX RC_Helitron 43418 44101 540 - . . scaffold38904 GLEAN promoter 54494 55493 1 + . ID=CGI_10003049; scaffold38904 GLEAN mRNA 55494 56021 1 + . ID=CGI_10003049; scaffold38904 TRF Tandem_Repeat 58222 58275 108 + . . scaffold38904 TRF Tandem_Repeat 61371 61461 146 + . . scaffold38904 TRF Tandem_Repeat 61427 61514 86 + . . scaffold38908 GLEAN promoter 2280 3279 1 + . ID=CGI_10003103; scaffold38908 GLEAN mRNA 3280 11445 1 + . ID=CGI_10003103; scaffold38908 TRF Tandem_Repeat 14100 14133 50 + . . scaffold38908 TRF Tandem_Repeat 20330 20378 98 + . . scaffold38908 WUBlastX DNA_IS4EU 37120 37629 132 + . . scaffold38908 WUBlastX DNA_IS4EU 37601 37900 109 + . . scaffold38908 WUBlastX DNA_IS4EU 37619 37810 121 + . . scaffold38908 TRF Tandem_Repeat 43287 43340 99 + . . scaffold38908 WUBlastX LINE_L1-Tx1 49312 49785 26 - . . scaffold38908 WUBlastX LINE_L1 50434 50691 76 - . . scaffold38908 WUBlastX LINE_L1-Tx1 50464 50676 89 - . . scaffold38908 WUBlastX LINE_RTE-X 59633 60478 313 + . . scaffold38908 WUBlastX LINE_RTE-X 60474 62357 683 + . . scaffold38908 WUBlastX LINE_RTE-X 61713 62471 59 + . . scaffold38912 GLEAN promoter 1347 2346 1 + . ID=CGI_10003031; scaffold38912 GLEAN mRNA 2347 7051 1 + . ID=CGI_10003031; scaffold38912 WUBlastX LINE_L2 6085 6420 85 - . . scaffold38912 GLEAN promoter 11859 12858 0.82866 + . ID=CGI_10003032; scaffold38912 GLEAN mRNA 12859 27330 0.82866 + . ID=CGI_10003032; scaffold38912 GLEAN promoter 28612 29611 1 + . ID=CGI_10003033; scaffold38912 GLEAN mRNA 29612 30948 1 + . ID=CGI_10003033; scaffold38912 GLEAN promoter 36207 37206 1 + . ID=CGI_10003034; scaffold38912 TRF Tandem_Repeat 37098 37122 50 + . . scaffold38912 GLEAN mRNA 37207 41587 1 + . ID=CGI_10003034; scaffold38912 GLEAN promoter 41491 42490 1 + . ID=CGI_10003035; scaffold38912 GLEAN mRNA 42491 43768 1 + . ID=CGI_10003035; scaffold38912 TRF Tandem_Repeat 45117 45174 116 + . . scaffold38912 GLEAN mRNA 47043 47207 0.618241 - . ID=CGI_10003036; scaffold38912 GLEAN promoter 47208 48207 0.618241 - . ID=CGI_10003036; scaffold38912 TRF Tandem_Repeat 55549 55588 80 + . . scaffold38912 GLEAN mRNA 55868 61288 0.989623 - . ID=CGI_10003037; scaffold38912 GLEAN promoter 61289 62288 0.989623 - . ID=CGI_10003037; scaffold38912 GLEAN mRNA 61681 61917 0.617784 - . ID=CGI_10003038; scaffold38912 GLEAN promoter 61918 62846 0.617784 - . ID=CGI_10003038; scaffold38920 TRF Tandem_Repeat 7138 7241 75 + . . scaffold38920 WUBlastX DNA_Helitron 10459 11115 151 + . . scaffold38920 GLEAN promoter 13909 14908 0.283475 + . ID=CGI_10003065; scaffold38920 GLEAN mRNA 14909 32582 0.283475 + . ID=CGI_10003065; scaffold38920 TRF Tandem_Repeat 15118 15163 65 + . . scaffold38920 TRF Tandem_Repeat 15598 15781 217 + . . scaffold38920 TRF Tandem_Repeat 28889 28914 52 + . . scaffold38920 TRF Tandem_Repeat 41679 42656 955 + . . scaffold38920 TRF Tandem_Repeat 41846 42479 635 + . . scaffold38920 TRF Tandem_Repeat 48636 48833 333 + . . scaffold38920 GLEAN promoter 49686 50685 0.998999 + . ID=CGI_10003066; scaffold38920 GLEAN mRNA 50686 61921 0.998999 + . ID=CGI_10003066; scaffold38920 TRF Tandem_Repeat 54500 54529 60 + . . scaffold38920 WUBlastX DNA_hAT 62759 63178 65 - . . scaffold38920 WUBlastX DNA_hAT-Ac 62921 63262 170 - . . scaffold38920 WUBlastX DNA_hAT-Ac 62924 63178 176 - . . scaffold38920 WUBlastX DNA_hAT-Ac 62924 63328 137 - . . scaffold38922 GLEAN mRNA 3188 26114 1 - . ID=CGI_10003058; scaffold38922 GLEAN promoter 25590 26589 0.997818 + . ID=CGI_10003059; scaffold38922 GLEAN promoter 26115 27114 1 - . ID=CGI_10003058; scaffold38922 GLEAN mRNA 26590 30993 0.997818 + . ID=CGI_10003059; scaffold38922 GLEAN mRNA 35602 42516 0.969597 - . ID=CGI_10003060; scaffold38922 GLEAN promoter 42517 43516 0.969597 - . ID=CGI_10003060; scaffold38922 GLEAN mRNA 42916 50001 0.999991 - . ID=CGI_10003061; scaffold38922 GLEAN promoter 50002 51001 0.999991 - . ID=CGI_10003061; scaffold38922 GLEAN mRNA 50416 61934 0.999991 - . ID=CGI_10003062; scaffold38922 GLEAN promoter 61935 62934 0.999991 - . ID=CGI_10003062; scaffold38934 TRF Tandem_Repeat 397 1811 1654 + . . scaffold38934 TRF Tandem_Repeat 397 1811 1659 + . . scaffold38934 TRF Tandem_Repeat 2288 2338 84 + . . scaffold38934 TRF Tandem_Repeat 2292 2339 51 + . . scaffold38934 TRF Tandem_Repeat 9377 11310 1789 + . . scaffold38934 TRF Tandem_Repeat 9481 11310 1498 + . . scaffold38934 TRF Tandem_Repeat 10214 11310 1023 + . . scaffold38934 TRF Tandem_Repeat 13224 13370 197 + . . scaffold38934 GLEAN promoter 13643 14642 0.999796 + . ID=CGI_10003096; scaffold38934 GLEAN mRNA 14643 26625 0.999796 + . ID=CGI_10003096; scaffold38934 WUBlastX LTR_Ngaro 20043 20228 39 - . . scaffold38934 WUBlastX LTR_Ngaro 20073 20228 43 - . . scaffold38934 WUBlastX LTR_Ngaro 20660 21313 93 - . . scaffold38934 WUBlastX LTR_Ngaro 20849 21286 108 - . . scaffold38934 WUBlastX LTR_Ngaro 20984 21286 165 - . . scaffold38934 GLEAN promoter 25982 26981 0.375661 + . ID=CGI_10003097; scaffold38934 GLEAN mRNA 26982 47955 0.375661 + . ID=CGI_10003097; scaffold38934 TRF Tandem_Repeat 29783 29816 68 + . . scaffold38934 WUBlastX DNA_Kolobok 44941 45171 38 + . . scaffold38934 WUBlastX DNA_Kolobok 45976 46143 86 + . . scaffold38934 WUBlastX DNA_Kolobok 46366 47082 411 - . . scaffold38934 WUBlastX DNA_Kolobok 48000 48419 221 - . . scaffold38934 WUBlastX DNA_Kolobok 48000 48323 250 - . . scaffold38934 WUBlastX DNA_Kolobok 48311 48511 41 - . . scaffold38934 WUBlastX DNA_Kolobok 48502 48858 33 - . . scaffold38934 WUBlastX DNA_Kolobok 49510 49569 20 - . . scaffold38934 WUBlastX DNA_Kolobok 52201 53580 45 + . . scaffold38934 TRF Tandem_Repeat 63367 63554 261 + . . scaffold38944 GLEAN promoter 1 610 1 + . ID=CGI_10003067; scaffold38944 GLEAN mRNA 611 5429 1 + . ID=CGI_10003067; scaffold38944 GLEAN mRNA 8560 9204 0.671206 - . ID=CGI_10003068; scaffold38944 GLEAN promoter 9205 10204 0.671206 - . ID=CGI_10003068; scaffold38944 TRF Tandem_Repeat 10235 10266 64 + . . scaffold38944 GLEAN mRNA 11067 20506 0.608915 - . ID=CGI_10003069; scaffold38944 TRF Tandem_Repeat 15994 16320 546 + . . scaffold38944 GLEAN promoter 20507 21506 0.608915 - . ID=CGI_10003069; scaffold38944 GLEAN promoter 21468 22467 0.769564 + . ID=CGI_10003070; scaffold38944 WUBlastX LTR_Gypsy 21742 22614 45 + . . scaffold38944 WUBlastX LTR_Gypsy 21742 22404 470 + . . scaffold38944 GLEAN mRNA 22468 23617 0.769564 + . ID=CGI_10003070; scaffold38944 WUBlastX LTR_Gypsy 22826 23467 57 + . . scaffold38944 GLEAN mRNA 24963 30774 0.72224 - . ID=CGI_10003071; scaffold38944 GLEAN promoter 30775 31774 0.72224 - . ID=CGI_10003071; scaffold38944 GLEAN promoter 31748 32747 0.889923 + . ID=CGI_10003072; scaffold38944 GLEAN mRNA 32748 37073 0.889923 + . ID=CGI_10003072; scaffold38944 TRF Tandem_Repeat 34458 34513 76 + . . scaffold38944 TRF Tandem_Repeat 34544 35670 1595 + . . scaffold38944 WUBlastX LINE_L2 40365 40844 87 - . . scaffold38944 GLEAN promoter 41660 42659 0.544852 + . ID=CGI_10003073; scaffold38944 GLEAN mRNA 42660 44744 0.544852 + . ID=CGI_10003073; scaffold38944 TRF Tandem_Repeat 42817 42860 88 + . . scaffold38944 GLEAN mRNA 48244 48795 1 - . ID=CGI_10003074; scaffold38944 GLEAN promoter 48796 49795 1 - . ID=CGI_10003074; scaffold38944 GLEAN mRNA 49812 53421 0.993907 - . ID=CGI_10003075; scaffold38944 GLEAN promoter 53422 54421 0.993907 - . ID=CGI_10003075; scaffold38952 TRF Tandem_Repeat 2683 2740 116 + . . scaffold38952 TRF Tandem_Repeat 19572 19653 110 + . . scaffold38952 WUBlastX LINE_Penelope 35194 35751 177 - . . scaffold38952 WUBlastX LINE_Penelope 35197 35628 214 - . . scaffold38952 WUBlastX LINE_Penelope 37148 37450 41 - . . scaffold38952 WUBlastX LINE_Penelope 37211 38239 373 - . . scaffold38952 WUBlastX LINE_Penelope 37904 38356 47 - . . scaffold38952 TRF Tandem_Repeat 42376 42406 62 + . . scaffold38952 TRF Tandem_Repeat 44687 45000 387 + . . scaffold38952 TRF Tandem_Repeat 44687 45000 454 + . . scaffold38952 GLEAN mRNA 49573 51892 0.644882 - . ID=CGI_10003050; scaffold38952 GLEAN promoter 51893 52892 0.644882 - . ID=CGI_10003050; scaffold38952 GLEAN promoter 54406 55405 1 + . ID=CGI_10003051; scaffold38952 GLEAN mRNA 55406 59892 1 + . ID=CGI_10003051; scaffold38952 WUBlastX LINE_RTE-X 61056 62987 483 + . . scaffold38966 TRF Tandem_Repeat 2462 2522 77 + . . scaffold38966 TRF Tandem_Repeat 2467 2521 65 + . . scaffold38966 GLEAN promoter 9273 10272 0.664373 + . ID=CGI_10003112; scaffold38966 GLEAN mRNA 10273 40286 0.664373 + . ID=CGI_10003112; scaffold38966 TRF Tandem_Repeat 29931 30064 110 + . . scaffold38966 GLEAN promoter 39711 40710 0.505852 + . ID=CGI_10003113; scaffold38966 GLEAN mRNA 40711 56502 0.505852 + . ID=CGI_10003113; scaffold38966 TRF Tandem_Repeat 49607 49648 57 + . . scaffold38966 WUBlastX DNA_TcMar-Tc1 52435 52818 105 + . . scaffold38966 WUBlastX DNA_TcMar-Tc1 52595 53455 205 + . . scaffold38966 WUBlastX DNA_TcMar-Tc1 52817 53455 305 + . . scaffold38966 GLEAN promoter 62161 63160 0.558395 + . ID=CGI_10003114; scaffold38966 GLEAN mRNA 63161 63816 0.558395 + . ID=CGI_10003114; scaffold38974 WUBlastX LTR_Pao 6264 7322 695 + . . scaffold38974 GLEAN promoter 17623 18622 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 18394 18450 43 + . . scaffold38974 WUBlastX DNA_Kolobok 18620 18769 52 + . . scaffold38974 GLEAN mRNA 18623 32076 0.703347 + . ID=CGI_10003119; scaffold38974 WUBlastX DNA_Kolobok 18765 18863 58 + . . scaffold38974 WUBlastX DNA_Kolobok 19548 19787 103 - . . scaffold38974 WUBlastX DNA_Kolobok 20566 20655 61 - . . scaffold38974 WUBlastX DNA_Kolobok 20717 20884 53 - . . scaffold38974 WUBlastX DNA_Kolobok 21300 21515 107 - . . scaffold38974 TRF Tandem_Repeat 38145 38223 77 + . . scaffold38974 TRF Tandem_Repeat 38145 38195 84 + . . scaffold38974 TRF Tandem_Repeat 38275 38347 146 + . . scaffold38974 TRF Tandem_Repeat 44495 44543 82 + . . scaffold38974 TRF Tandem_Repeat 45775 45913 262 + . . scaffold38974 TRF Tandem_Repeat 46008 46452 701 + . . scaffold38974 WUBlastX LINE_Penelope 46562 46996 45 - . . scaffold38974 TRF Tandem_Repeat 49227 49301 150 + . . scaffold38974 TRF Tandem_Repeat 63082 63107 52 + . . scaffold38976 GLEAN promoter 1 800 0.854638 + . ID=CGI_10003109; scaffold38976 GLEAN mRNA 801 15953 0.854638 + . ID=CGI_10003109; scaffold38976 WUBlastX LTR_Gypsy 7764 8096 39 - . . scaffold38976 WUBlastX LTR_Gypsy 7875 9392 1423 - . . scaffold38976 WUBlastX LTR_Gypsy 9349 9915 257 - . . scaffold38976 WUBlastX LTR_Gypsy 9927 10343 348 - . . scaffold38976 WUBlastX DNA_TcMar-Marin 10731 10946 84 - . . scaffold38976 WUBlastX DNA_TcMar-Marin 11098 11280 120 - . . scaffold38976 WUBlastX DNA_TcMar-Marin 11282 11776 167 - . . scaffold38976 TRF Tandem_Repeat 25193 25260 127 + . . scaffold38976 TRF Tandem_Repeat 27508 27547 80 + . . scaffold38976 TRF Tandem_Repeat 44697 44730 68 + . . scaffold38976 TRF Tandem_Repeat 57433 57493 104 + . . scaffold38976 TRF Tandem_Repeat 59266 59352 165 + . . scaffold38978 GLEAN promoter 1 442 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX LTR_Gypsy 2 355 86 + . . scaffold38978 GLEAN mRNA 443 10686 0.499437 + . ID=CGI_10003126; scaffold38978 WUBlastX DNA_TcMar-Tc1 2983 3255 63 + . . scaffold38978 WUBlastX DNA_TcMar-Tc1 3096 3659 128 + . . scaffold38978 WUBlastX DNA_TcMar-Tc1 3195 3659 179 + . . scaffold38978 TRF Tandem_Repeat 5267 5317 102 + . . scaffold38978 TRF Tandem_Repeat 6346 6428 76 + . . scaffold38978 TRF Tandem_Repeat 6346 6427 69 + . . scaffold38978 TRF Tandem_Repeat 6349 6428 88 + . . scaffold38978 WUBlastX DNA_Harbinger 7527 7757 72 - . . scaffold38978 GLEAN mRNA 7539 8521 0.655792 - . ID=CGI_10003127; scaffold38978 WUBlastX DNA_Harbinger 7880 8131 231 - . . scaffold38978 WUBlastX DNA_Harbinger 8435 8779 164 - . . scaffold38978 WUBlastX DNA_Harbinger 8441 8863 77 - . . scaffold38978 GLEAN promoter 8522 9521 0.655792 - . ID=CGI_10003127; scaffold38978 WUBlastX DNA_Harbinger 9996 10214 39 - . . scaffold38978 WUBlastX DNA_TcMar-Tc1 10959 11201 28 + . . scaffold38978 WUBlastX DNA_TcMar-Tc1 11022 11294 63 + . . scaffold38978 WUBlastX DNA_TcMar-Tc1 11135 11698 128 + . . scaffold38978 WUBlastX DNA_TcMar-Tc1 11234 11698 179 + . . scaffold38978 GLEAN mRNA 13615 27476 0.245317 - . ID=CGI_10003128; scaffold38978 GLEAN promoter 27477 28476 0.245317 - . ID=CGI_10003128; scaffold38978 WUBlastX DNA_Sola 27702 27809 79 - . . scaffold38978 WUBlastX RC_Helitron 27816 28001 68 + . . scaffold38978 WUBlastX DNA_Kolobok 32560 32976 57 + . . scaffold38978 TRF Tandem_Repeat 41566 41745 256 + . . scaffold38978 WUBlastX DNA_Kolobok 48196 48681 173 + . . scaffold38978 WUBlastX DNA_Kolobok 49554 50018 213 + . . scaffold38978 TRF Tandem_Repeat 50262 50309 51 + . . scaffold38978 TRF Tandem_Repeat 50262 50306 72 + . . scaffold38978 WUBlastX DNA_Kolobok 51713 51835 25 - . . scaffold38978 WUBlastX DNA_TcMar-Tc1 54119 54223 38 - . . scaffold38978 WUBlastX LTR_Gypsy 57801 58250 308 - . . scaffold38978 WUBlastX LTR_Gypsy 57903 58325 155 - . . scaffold38978 WUBlastX LTR_Gypsy 58240 58455 135 - . . scaffold38978 WUBlastX LTR_Gypsy 58261 58503 96 - . . scaffold38978 WUBlastX LTR_Gypsy 58360 58578 51 - . . scaffold38978 WUBlastX LTR_Gypsy 58580 59275 614 - . . scaffold38978 WUBlastX LTR_Gypsy 59271 59387 108 - . . scaffold38978 WUBlastX LTR_Gypsy 59331 60338 310 - . . scaffold38978 GLEAN promoter 60776 61775 0.776794 + . ID=CGI_10003129; scaffold38978 GLEAN mRNA 61776 62003 0.776794 + . ID=CGI_10003129; scaffold38978 WUBlastX LTR_Gypsy 62493 62519 24 - . . scaffold38978 WUBlastX LTR_Gypsy 62556 62837 42 - . . scaffold38978 WUBlastX LTR_Gypsy 62610 62837 70 - . . scaffold38978 WUBlastX LTR_Gypsy-Cigr 62706 62876 130 - . . scaffold38978 WUBlastX LTR_Gypsy 62764 63276 156 - . . scaffold38978 WUBlastX LTR_Gypsy-Cigr 62869 63438 261 - . . scaffold38978 WUBlastX LTR_Gypsy 63539 63637 23 - . . scaffold38980 GLEAN mRNA 4653 12742 0.544846 - . ID=CGI_10003117; scaffold38980 GLEAN promoter 12743 13742 0.544846 - . ID=CGI_10003117; scaffold38980 GLEAN promoter 45580 46579 0.499055 + . ID=CGI_10003118; scaffold38980 GLEAN mRNA 46580 61607 0.499055 + . ID=CGI_10003118; scaffold38980 TRF Tandem_Repeat 55987 56024 51 + . . scaffold38980 WUBlastX LTR_Copia 62413 63858 862 - . . scaffold38980 WUBlastX LTR_Copia 63460 64047 121 - . . scaffold38984 GLEAN mRNA 1845 8181 0.937174 - . ID=CGI_10003104; scaffold38984 TRF Tandem_Repeat 4270 4326 105 + . . scaffold38984 GLEAN promoter 8182 9181 0.937174 - . ID=CGI_10003104; scaffold38984 GLEAN mRNA 8531 16087 0.937171 - . ID=CGI_10003105; scaffold38984 TRF Tandem_Repeat 10953 10995 59 + . . scaffold38984 WUBlastX LINE_RTE-BovB 15666 16040 95 + . . scaffold38984 GLEAN promoter 16088 17087 0.937171 - . ID=CGI_10003105; scaffold38984 GLEAN mRNA 21886 47771 0.930041 - . ID=CGI_10003107; scaffold38984 TRF Tandem_Repeat 23063 23092 60 + . . scaffold38984 GLEAN promoter 23377 24376 0.618241 + . ID=CGI_10003108; scaffold38984 GLEAN mRNA 24377 24574 0.618241 + . ID=CGI_10003108; scaffold38984 TRF Tandem_Repeat 34884 35132 374 + . . scaffold38984 GLEAN promoter 47772 48771 0.930041 - . ID=CGI_10003107; scaffold38984 TRF Tandem_Repeat 51801 51839 78 + . . scaffold38984 TRF Tandem_Repeat 56474 56704 453 + . . scaffold38984 TRF Tandem_Repeat 59897 60049 227 + . . scaffold38984 TRF Tandem_Repeat 63473 63541 129 + . . scaffold38990 TRF Tandem_Repeat 3805 3857 106 + . . scaffold38990 GLEAN promoter 4580 5579 0.999995 + . ID=CGI_10003122; scaffold38990 GLEAN mRNA 5580 15948 0.999995 + . ID=CGI_10003122; scaffold38990 GLEAN promoter 52774 53773 1 + . ID=CGI_10003123; scaffold38990 GLEAN mRNA 53774 55409 1 + . ID=CGI_10003123; scaffold38990 TRF Tandem_Repeat 56955 57703 1065 + . . scaffold38990 WUBlastX LINE_RTE-X 60528 61949 176 - . . scaffold38990 WUBlastX LINE_RTE-X 60849 61955 257 - . . scaffold38990 WUBlastX LINE_R2 61569 62027 78 - . . scaffold38990 WUBlastX LINE_L2 62591 62677 24 - . . scaffold38990 WUBlastX LINE_L2 63017 63430 71 - . . scaffold38990 WUBlastX LINE_CR1 63122 63745 23 - . . scaffold38990 WUBlastX LINE_RTE-X 63128 63457 138 - . . scaffold38990 WUBlastX LINE_L2 63131 63634 24 - . . scaffold38990 WUBlastX LINE_L2 63131 63532 65 - . . scaffold38996 GLEAN mRNA 51006 52988 0.588023 - . ID=CGI_10003124; scaffold38996 GLEAN promoter 52989 53988 0.588023 - . ID=CGI_10003124; scaffold38996 GLEAN promoter 57812 58811 0.532734 + . ID=CGI_10003125; scaffold38996 GLEAN mRNA 58812 63705 0.532734 + . ID=CGI_10003125; scaffold39008 GLEAN promoter 9696 10695 0.999675 + . ID=CGI_10003120; scaffold39008 GLEAN mRNA 10696 27438 0.999675 + . ID=CGI_10003120; scaffold39008 GLEAN promoter 33257 34256 0.79925 + . ID=CGI_10003121; scaffold39008 GLEAN mRNA 34257 46437 0.79925 + . ID=CGI_10003121; scaffold39014 WUBlastX LINE_L1 3282 3506 22 - . . scaffold39014 WUBlastX LTR_Gypsy 4457 4963 32 + . . scaffold39014 WUBlastX LTR_Gypsy 4481 4843 87 + . . scaffold39014 WUBlastX LTR_Gypsy 4967 5143 59 + . . scaffold39014 WUBlastX LTR_Gypsy 6157 7029 73 + . . scaffold39014 WUBlastX LTR_Gypsy? 6775 7818 25 + . . scaffold39014 GLEAN promoter 9476 10475 0.848087 + . ID=CGI_10003135; scaffold39014 WUBlastX LINE_L1 10314 10778 79 + . . scaffold39014 GLEAN mRNA 10476 11390 0.848087 + . ID=CGI_10003135; scaffold39014 WUBlastX LINE_L1-Tx1 28204 28446 25 - . . scaffold39014 WUBlastX LINE_L1-Tx1 28532 29191 103 - . . scaffold39014 WUBlastX LINE_L1-Tx1 28676 29185 134 - . . scaffold39014 WUBlastX LINE_L1-Tx1 28891 30531 654 - . . scaffold39014 WUBlastX LINE_RTE-X 30702 31013 67 - . . scaffold39014 WUBlastX LINE_RTE-X 30840 31016 69 - . . scaffold39014 WUBlastX LINE_RTE-X 30870 31043 48 - . . scaffold39014 WUBlastX LINE_RTE-X 31031 31375 38 - . . scaffold39014 WUBlastX LINE_RTE-X 31360 31542 92 - . . scaffold39014 WUBlastX LINE_RTE-X 31366 31512 106 - . . scaffold39014 WUBlastX LINE_L1-Tx1 31534 31701 62 - . . scaffold39014 WUBlastX LINE_L1 31698 31778 33 - . . scaffold39014 WUBlastX LINE_L1-Tx1 31715 32041 73 - . . scaffold39014 WUBlastX LINE_L1-Tx1 31850 32098 83 - . . scaffold39014 TRF Tandem_Repeat 32116 32202 99 + . . scaffold39014 TRF Tandem_Repeat 32279 32411 151 + . . scaffold39014 TRF Tandem_Repeat 32288 32489 127 + . . scaffold39014 TRF Tandem_Repeat 32492 32633 133 + . . scaffold39014 WUBlastX LINE_L1 33744 34145 56 - . . scaffold39014 WUBlastX LINE_L1-Tx1 33912 34157 140 - . . scaffold39014 WUBlastX LINE_L1-Tx1 33921 34199 86 - . . scaffold39014 TRF Tandem_Repeat 35300 35344 90 + . . scaffold39014 TRF Tandem_Repeat 36060 36295 295 + . . scaffold39014 TRF Tandem_Repeat 36151 36265 68 + . . scaffold39014 WUBlastX LINE_RTE-X 36348 38288 1138 - . . scaffold39014 WUBlastX LINE_RTE-X 38279 39022 467 - . . scaffold39014 WUBlastX LINE_RTE-X 39098 39670 195 - . . scaffold39014 WUBlastX LINE_L1-Tx1 47582 47680 25 + . . scaffold39014 TRF Tandem_Repeat 48216 48259 88 + . . scaffold39014 WUBlastX LINE_L1 48280 49218 44 + . . scaffold39014 WUBlastX LINE_L1 48445 49263 72 + . . scaffold39014 WUBlastX LINE_L1-Tx1 48568 49287 300 + . . scaffold39014 WUBlastX DNA_MuDR 50835 51119 30 + . . scaffold39014 WUBlastX DNA_MuDR 51071 51409 96 + . . scaffold39014 WUBlastX LINE_RTE-X 51724 51912 41 - . . scaffold39014 WUBlastX LINE_RTE-X 51778 51945 29 - . . scaffold39014 WUBlastX LINE_RTE-X 52026 52547 56 - . . scaffold39014 WUBlastX LINE_RTE-X 52278 52574 67 - . . scaffold39014 WUBlastX LINE_RTE-X 52529 52990 118 - . . scaffold39014 WUBlastX LINE_RTE-BovB 52577 53155 47 - . . scaffold39014 WUBlastX LINE_CR1 52598 53065 74 - . . scaffold39014 GLEAN promoter 60763 61762 0.6936 + . ID=CGI_10003136; scaffold39014 GLEAN mRNA 61763 62871 0.6936 + . ID=CGI_10003136; scaffold39014 WUBlastX DNA_Harbinger 61790 61972 24 + . . scaffold39014 WUBlastX DNA_Harbinger 62650 62859 39 + . . scaffold39028 WUBlastX LTR_Gypsy-Cigr 2228 2428 25 - . . scaffold39028 WUBlastX LTR_Gypsy 2319 2879 83 - . . scaffold39028 WUBlastX LTR_Gypsy 2484 2879 172 - . . scaffold39028 WUBlastX LTR_Gypsy-Cigr 3797 4105 80 - . . scaffold39028 TRF Tandem_Repeat 15208 15290 57 + . . scaffold39028 TRF Tandem_Repeat 15243 15289 53 + . . scaffold39028 GLEAN mRNA 21997 64526 0.387839 - . ID=CGI_10003151; scaffold39028 TRF Tandem_Repeat 43375 43427 106 + . . scaffold39028 TRF Tandem_Repeat 44451 44486 63 + . . scaffold39028 TRF Tandem_Repeat 44660 44714 110 + . . scaffold39028 TRF Tandem_Repeat 45605 45675 53 + . . scaffold39028 TRF Tandem_Repeat 45605 45789 64 + . . scaffold39028 TRF Tandem_Repeat 45606 45691 77 + . . scaffold39028 GLEAN promoter 64527 64812 0.387839 - . ID=CGI_10003151; scaffold39030 TRF Tandem_Repeat 1930 1980 52 + . . scaffold39030 TRF Tandem_Repeat 5498 5591 125 + . . scaffold39030 TRF Tandem_Repeat 5648 5738 132 + . . scaffold39030 TRF Tandem_Repeat 8015 8062 96 + . . scaffold39030 GLEAN promoter 43749 44748 0.482544 + . ID=CGI_10003137; scaffold39030 GLEAN mRNA 44749 55716 0.482544 + . ID=CGI_10003137; scaffold39030 TRF Tandem_Repeat 56181 56220 80 + . . scaffold39030 WUBlastX LINE_RTE-BovB 56904 57371 60 + . . scaffold39030 TRF Tandem_Repeat 57632 57665 59 + . . scaffold39040 GLEAN mRNA 587 10567 0.842724 - . ID=CGI_10003144; scaffold39040 TRF Tandem_Repeat 5031 5066 72 + . . scaffold39040 GLEAN promoter 10568 11567 0.842724 - . ID=CGI_10003144; scaffold39040 TRF Tandem_Repeat 25949 25980 55 + . . scaffold39040 WUBlastX LINE_L1-Tx1 26936 27094 20 + . . scaffold39040 WUBlastX LINE_L1-Tx1 27120 27677 84 + . . scaffold39040 TRF Tandem_Repeat 28233 28289 80 + . . scaffold39040 GLEAN mRNA 38002 64552 0.999598 - . ID=CGI_10003145; scaffold39040 TRF Tandem_Repeat 45600 45629 51 + . . scaffold39040 TRF Tandem_Repeat 46484 46512 58 + . . scaffold39040 TRF Tandem_Repeat 49458 49504 94 + . . scaffold39040 TRF Tandem_Repeat 51124 51227 181 + . . scaffold39040 GLEAN promoter 64553 64718 0.999598 - . ID=CGI_10003145; scaffold39050 TRF Tandem_Repeat 3271 3327 114 + . . scaffold39050 TRF Tandem_Repeat 6481 6514 59 + . . scaffold39050 GLEAN promoter 12660 13659 0.645931 + . ID=CGI_10003155; scaffold39050 GLEAN mRNA 13660 14855 0.645931 + . ID=CGI_10003155; scaffold39050 TRF Tandem_Repeat 21556 21641 109 + . . scaffold39050 TRF Tandem_Repeat 21729 21956 174 + . . scaffold39050 TRF Tandem_Repeat 21729 21879 178 + . . scaffold39050 TRF Tandem_Repeat 21729 21957 219 + . . scaffold39050 TRF Tandem_Repeat 21956 22135 193 + . . scaffold39050 WUBlastX LTR_Gypsy-Cigr 38927 39259 82 - . . scaffold39050 WUBlastX LTR_Gypsy 38948 39154 91 - . . scaffold39050 WUBlastX LINE_L1-Tx1 51549 51923 36 - . . scaffold39050 WUBlastX LINE_L1-Tx1 51630 52697 184 - . . scaffold39050 WUBlastX LINE_L1-Tx1 53161 53478 31 - . . scaffold39050 WUBlastX LINE_L1-Tx1 53224 53439 57 - . . scaffold39050 WUBlastX LINE_L1-Tx1 53417 54322 525 - . . scaffold39050 WUBlastX LINE_L1-Tx1 53417 55339 318 - . . scaffold39050 WUBlastX LINE_RTE-BovB 55342 55605 225 + . . scaffold39050 WUBlastX LINE_RTE-BovB 55342 55674 178 + . . scaffold39050 WUBlastX LINE_L1-Tx1 55684 56307 322 - . . scaffold39050 TRF Tandem_Repeat 58628 58666 78 + . . scaffold39064 TRF Tandem_Repeat 8 900 1234 + . . scaffold39064 TRF Tandem_Repeat 1915 2430 174 + . . scaffold39064 GLEAN mRNA 2949 13950 1 - . ID=CGI_10003156; scaffold39064 TRF Tandem_Repeat 3437 3474 58 + . . scaffold39064 TRF Tandem_Repeat 4531 4753 222 + . . scaffold39064 TRF Tandem_Repeat 4842 5013 217 + . . scaffold39064 TRF Tandem_Repeat 5232 5869 961 + . . scaffold39064 TRF Tandem_Repeat 7258 7302 81 + . . scaffold39064 GLEAN promoter 13951 14950 1 - . ID=CGI_10003156; scaffold39064 GLEAN mRNA 14335 16501 0.999977 - . ID=CGI_10003157; scaffold39064 GLEAN promoter 16502 17501 0.999977 - . ID=CGI_10003157; scaffold39064 GLEAN promoter 16581 17580 0.245809 + . ID=CGI_10003158; scaffold39064 GLEAN mRNA 17581 32044 0.245809 + . ID=CGI_10003158; scaffold39064 TRF Tandem_Repeat 20327 20374 87 + . . scaffold39064 TRF Tandem_Repeat 26722 26756 70 + . . scaffold39064 TRF Tandem_Repeat 32201 32418 255 + . . scaffold39064 TRF Tandem_Repeat 45901 46234 271 + . . scaffold39064 TRF Tandem_Repeat 45908 46302 235 + . . scaffold39064 WUBlastX LINE_RTE-X 46843 47268 74 + . . scaffold39064 WUBlastX LINE_R1 61481 61678 22 - . . scaffold39064 WUBlastX LINE_L1 61678 61719 22 - . . scaffold39064 WUBlastX LINE_L2 62483 62815 68 - . . scaffold39064 WUBlastX LINE_RTE-X 62579 62836 159 - . . scaffold39064 WUBlastX LINE_RTE-X 62824 63909 224 - . . scaffold39064 WUBlastX LINE_RTE-X 62848 63639 241 - . . scaffold39064 WUBlastX LINE_L2 63864 63947 20 - . . scaffold39066 GLEAN mRNA 24138 53994 0.923769 - . ID=CGI_10003160; scaffold39066 GLEAN promoter 53995 54994 0.923769 - . ID=CGI_10003160; scaffold39068 WUBlastX LINE_RTE-X 11902 12363 111 + . . scaffold39068 WUBlastX LINE_RTE-X 11923 12252 148 + . . scaffold39068 TRF Tandem_Repeat 34522 34557 54 + . . scaffold39068 TRF Tandem_Repeat 40999 41052 67 + . . scaffold39068 TRF Tandem_Repeat 59681 59740 120 + . . scaffold39068 TRF Tandem_Repeat 63412 63479 50 + . . scaffold39074 GLEAN promoter 1198 2197 0.544852 + . ID=CGI_10003130; scaffold39074 GLEAN mRNA 2198 10101 0.544852 + . ID=CGI_10003130; scaffold39074 TRF Tandem_Repeat 2420 2448 58 + . . scaffold39074 TRF Tandem_Repeat 7897 8235 475 + . . scaffold39074 WUBlastX DNA_TcMar-Marin 12620 12811 41 - . . scaffold39074 WUBlastX DNA_TcMar-Marin 12674 12814 53 - . . scaffold39074 WUBlastX DNA_TcMar-Marin 12722 12829 56 - . . scaffold39074 GLEAN mRNA 14180 20586 1 - . ID=CGI_10003131; scaffold39074 GLEAN promoter 20587 21586 1 - . ID=CGI_10003131; scaffold39074 TRF Tandem_Repeat 21561 21610 86 + . . scaffold39074 GLEAN mRNA 28567 29538 0.999999 - . ID=CGI_10003132; scaffold39074 GLEAN promoter 29539 30538 0.999999 - . ID=CGI_10003132; scaffold39074 GLEAN promoter 30226 31225 0.810959 + . ID=CGI_10003133; scaffold39074 GLEAN mRNA 31226 38092 0.810959 + . ID=CGI_10003133; scaffold39074 TRF Tandem_Repeat 35774 35832 100 + . . scaffold39074 TRF Tandem_Repeat 39021 39058 67 + . . scaffold39074 TRF Tandem_Repeat 41216 41312 171 + . . scaffold39074 TRF Tandem_Repeat 41216 41312 171 + . . scaffold39074 WUBlastX LINE_R2-Hero 47124 47450 86 - . . scaffold39074 WUBlastX LINE_R2-Hero 47560 47628 46 - . . scaffold39074 WUBlastX LINE_R2-Hero 47691 47951 73 - . . scaffold39074 WUBlastX LINE_R2-Hero 47971 48030 20 - . . scaffold39074 GLEAN promoter 53989 54988 0.434121 + . ID=CGI_10003134; scaffold39074 GLEAN mRNA 54989 62699 0.434121 + . ID=CGI_10003134; scaffold39078 TRF Tandem_Repeat 518 550 59 + . . scaffold39078 TRF Tandem_Repeat 3580 3641 124 + . . scaffold39078 TRF Tandem_Repeat 8471 8505 70 + . . scaffold39078 GLEAN promoter 9772 10771 1 + . ID=CGI_10003179; scaffold39078 GLEAN mRNA 10772 13337 1 + . ID=CGI_10003179; scaffold39078 GLEAN promoter 14654 15653 1 + . ID=CGI_10003180; scaffold39078 TRF Tandem_Repeat 15165 15203 78 + . . scaffold39078 GLEAN mRNA 15654 22273 1 + . ID=CGI_10003180; scaffold39078 TRF Tandem_Repeat 18002 18042 82 + . . scaffold39078 TRF Tandem_Repeat 19469 19496 56 + . . scaffold39078 TRF Tandem_Repeat 24796 24857 97 + . . scaffold39078 GLEAN mRNA 27326 46494 0.639971 - . ID=CGI_10003181; scaffold39078 TRF Tandem_Repeat 29530 29583 92 + . . scaffold39078 GLEAN promoter 46495 47494 0.639971 - . ID=CGI_10003181; scaffold39078 WUBlastX LINE_L1-Tx1 58281 58745 48 - . . scaffold39078 WUBlastX LINE_L1-Tx1 58928 59665 242 - . . scaffold39078 WUBlastX LINE_L1-Tx1 59664 59948 79 - . . scaffold39078 WUBlastX LINE_L1-Tx1 59730 59948 97 - . . scaffold39078 TRF Tandem_Repeat 62540 62594 101 + . . scaffold39078 TRF Tandem_Repeat 63591 63671 90 + . . scaffold39080 TRF Tandem_Repeat 956 2289 1915 + . . scaffold39080 TRF Tandem_Repeat 2782 2839 100 + . . scaffold39080 TRF Tandem_Repeat 3111 3985 1233 + . . scaffold39080 GLEAN promoter 5157 6156 0.649524 + . ID=CGI_10003166; scaffold39080 GLEAN mRNA 6157 6489 0.649524 + . ID=CGI_10003166; scaffold39080 GLEAN mRNA 6175 9827 0.896784 - . ID=CGI_10003167; scaffold39080 TRF Tandem_Repeat 6658 7084 297 + . . scaffold39080 TRF Tandem_Repeat 6746 7084 250 + . . scaffold39080 GLEAN promoter 9828 10827 0.896784 - . ID=CGI_10003167; scaffold39080 TRF Tandem_Repeat 11253 12542 1846 + . . scaffold39080 GLEAN mRNA 14757 15038 0.835123 - . ID=CGI_10003168; scaffold39080 GLEAN promoter 15039 16038 0.835123 - . ID=CGI_10003168; scaffold39080 WUBlastX LTR_Ngaro 16957 17553 180 + . . scaffold39080 WUBlastX LTR_Ngaro 17050 17562 210 + . . scaffold39080 WUBlastX LTR_Ngaro 17564 17725 46 + . . scaffold39080 WUBlastX LTR_Ngaro 17701 18027 66 + . . scaffold39080 WUBlastX LTR_Ngaro 17764 18021 86 + . . scaffold39080 WUBlastX LTR_Ngaro 18017 18427 124 + . . scaffold39080 WUBlastX LTR_Ngaro 18423 18596 73 + . . scaffold39080 WUBlastX DNA_Academ 26046 26312 66 + . . scaffold39080 WUBlastX DNA_Academ 26312 27445 581 + . . scaffold39080 WUBlastX LINE_RTE-X 32540 33430 132 - . . scaffold39080 WUBlastX LINE_RTE-X 32684 34249 594 - . . scaffold39080 TRF Tandem_Repeat 41752 41798 76 + . . scaffold39080 TRF Tandem_Repeat 43230 43256 54 + . . scaffold39080 TRF Tandem_Repeat 45115 45148 50 + . . scaffold39080 TRF Tandem_Repeat 45812 45900 99 + . . scaffold39080 WUBlastX DNA_TcMar-Tc1 47308 47535 99 + . . scaffold39080 TRF Tandem_Repeat 50210 50245 56 + . . scaffold39080 TRF Tandem_Repeat 59067 59108 84 + . . scaffold39080 WUBlastX DNA_TcMar-Tc1 61269 62120 78 + . . scaffold39080 WUBlastX DNA_TcMar-Tc1 61935 62156 79 + . . scaffold39080 WUBlastX DNA_TcMar-Tc1 61950 62126 89 + . . scaffold39080 WUBlastX DNA_TcMar-Tc1 61990 62277 40 + . . scaffold39080 TRF Tandem_Repeat 65228 65269 75 + . . scaffold39088 GLEAN mRNA 1454 13727 0.911655 - . ID=CGI_10003169; scaffold39088 TRF Tandem_Repeat 6336 6484 97 + . . scaffold39088 TRF Tandem_Repeat 9530 10279 975 + . . scaffold39088 TRF Tandem_Repeat 10417 10460 72 + . . scaffold39088 GLEAN promoter 13728 14727 0.911655 - . ID=CGI_10003169; scaffold39088 GLEAN promoter 16292 17291 1 + . ID=CGI_10003170; scaffold39088 GLEAN mRNA 17292 19819 1 + . ID=CGI_10003170; scaffold39088 GLEAN mRNA 21277 25030 1 - . ID=CGI_10003171; scaffold39088 GLEAN promoter 24278 25277 1 + . ID=CGI_10003172; scaffold39088 GLEAN promoter 25031 26030 1 - . ID=CGI_10003171; scaffold39088 GLEAN mRNA 25278 28469 1 + . ID=CGI_10003172; scaffold39088 TRF Tandem_Repeat 26170 26202 57 + . . scaffold39088 GLEAN mRNA 31554 48725 0.999086 - . ID=CGI_10003173; scaffold39088 WUBlastX DNA_TcMar-Tc1 40134 40247 20 + . . scaffold39088 WUBlastX DNA_TcMar-Tc1 40219 40566 96 + . . scaffold39088 WUBlastX DNA_TcMar-Tc1 40571 40834 51 + . . scaffold39088 WUBlastX DNA_TcMar-Tc1 40571 40783 118 + . . scaffold39088 WUBlastX DNA_TcMar-Tc1 41232 41369 92 + . . scaffold39088 WUBlastX DNA_TcMar-Tc1 41238 41435 66 + . . scaffold39088 WUBlastX DNA_TcMar-Tc1 41250 41582 57 + . . scaffold39088 GLEAN promoter 43469 44468 0.98712 + . ID=CGI_10003174; scaffold39088 GLEAN mRNA 44469 63862 0.98712 + . ID=CGI_10003174; scaffold39088 GLEAN promoter 48726 49725 0.999086 - . ID=CGI_10003173; scaffold39088 TRF Tandem_Repeat 64184 65266 1403 + . . scaffold39096 TRF Tandem_Repeat 1446 1488 77 + . . scaffold39096 GLEAN promoter 1759 2758 0.999949 + . ID=CGI_10003146; scaffold39096 GLEAN mRNA 2759 26289 0.999949 + . ID=CGI_10003146; scaffold39096 WUBlastX LTR_Gypsy 21905 22762 64 + . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 22034 22738 108 + . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 22040 22513 114 + . . scaffold39096 WUBlastX LTR_Gypsy 22783 23196 74 + . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 22912 23256 79 + . . scaffold39096 WUBlastX LTR_Gypsy 24261 26228 1116 + . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 24618 26141 1326 + . . scaffold39096 WUBlastX LTR_Gypsy 26546 26602 28 + . . scaffold39096 TRF Tandem_Repeat 28154 28196 86 + . . scaffold39096 TRF Tandem_Repeat 32870 32925 112 + . . scaffold39096 TRF Tandem_Repeat 33045 33101 114 + . . scaffold39096 TRF Tandem_Repeat 35917 36827 1178 + . . scaffold39096 WUBlastX LTR_ERV1 36977 37006 22 - . . scaffold39096 WUBlastX LTR_Copia 37533 37742 20 - . . scaffold39096 WUBlastX LTR_ERV1 37741 38391 127 - . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 37843 38394 410 - . . scaffold39096 WUBlastX LTR_ERVK 38152 38442 58 - . . scaffold39096 WUBlastX LTR_Gypsy 38441 39208 403 - . . scaffold39096 WUBlastX LTR_Gypsy 39199 39537 287 - . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 39561 40754 349 - . . scaffold39096 WUBlastX LTR_Gypsy 40720 41070 56 - . . scaffold39096 WUBlastX LTR_Gypsy 40735 41145 38 - . . scaffold39096 WUBlastX LTR_Gypsy 41216 41923 128 - . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 41279 41869 169 - . . scaffold39096 TRF Tandem_Repeat 43031 43066 58 + . . scaffold39096 GLEAN promoter 43188 44187 1 + . ID=CGI_10003147; scaffold39096 GLEAN mRNA 44188 45553 1 + . ID=CGI_10003147; scaffold39096 TRF Tandem_Repeat 45781 45925 74 + . . scaffold39096 TRF Tandem_Repeat 46907 47052 93 + . . scaffold39096 GLEAN mRNA 47279 48644 0.558382 - . ID=CGI_10003148; scaffold39096 GLEAN promoter 48645 49644 0.558382 - . ID=CGI_10003148; scaffold39096 GLEAN promoter 49582 50581 0.813277 + . ID=CGI_10003149; scaffold39096 TRF Tandem_Repeat 49766 49801 58 + . . scaffold39096 GLEAN mRNA 50582 58209 0.813277 + . ID=CGI_10003149; scaffold39096 WUBlastX LTR_Gypsy 50909 51616 128 + . . scaffold39096 WUBlastX LTR_Gypsy-Cigr 50963 51553 169 + . . scaffold39096 WUBlastX LTR_Gypsy 51687 52097 38 + . . scaffold39096 WUBlastX LTR_Gypsy 51762 52112 56 + . . scaffold39096 GLEAN promoter 57816 58815 0.320842 + . ID=CGI_10003150; scaffold39096 GLEAN mRNA 58816 63020 0.320842 + . ID=CGI_10003150; scaffold391 WUBlastX LINE_L1 6406 6936 93 + . . scaffold391 WUBlastX LINE_L1 6559 7164 24 + . . scaffold391 WUBlastX LINE_L1 6562 7029 87 + . . scaffold391 WUBlastX LINE_L1-Tx1 6562 6918 138 + . . scaffold391 WUBlastX LINE_L1-Tx1 7799 7951 25 + . . scaffold391 GLEAN promoter 18365 19364 0.354697 + . ID=CGI_10001784; scaffold391 GLEAN mRNA 19365 26832 0.354697 + . ID=CGI_10001784; scaffold39120 TRF Tandem_Repeat 28189 28225 51 + . . scaffold39120 GLEAN promoter 35514 36513 0.858496 + . ID=CGI_10003188; scaffold39120 GLEAN mRNA 36514 50111 0.858496 + . ID=CGI_10003188; scaffold39120 WUBlastX LTR_Ngaro 45981 46208 102 - . . scaffold39120 WUBlastX LTR_Ngaro 46014 46286 81 - . . scaffold39120 WUBlastX LTR_Ngaro 46147 46365 56 - . . scaffold39120 WUBlastX LTR_Ngaro 46310 46471 41 - . . scaffold39120 WUBlastX LTR_Ngaro 46397 46558 33 - . . scaffold39120 WUBlastX DNA_IS4EU 47978 48142 58 - . . scaffold39120 WUBlastX DNA_Kolobok-IS4 47978 48259 27 - . . scaffold39120 GLEAN promoter 50312 51311 0.99067 + . ID=CGI_10003189; scaffold39120 TRF Tandem_Repeat 50512 50565 55 + . . scaffold39120 GLEAN mRNA 51312 54803 0.99067 + . ID=CGI_10003189; scaffold39120 TRF Tandem_Repeat 54291 54331 82 + . . scaffold39120 TRF Tandem_Repeat 55446 55570 115 + . . scaffold39120 TRF Tandem_Repeat 55571 55774 151 + . . scaffold39120 TRF Tandem_Repeat 55868 55954 131 + . . scaffold39120 TRF Tandem_Repeat 60009 60085 147 + . . scaffold39120 TRF Tandem_Repeat 60469 60519 50 + . . scaffold39120 WUBlastX DNA_Harbinger 63782 64240 132 + . . scaffold39120 WUBlastX DNA_Harbinger 63818 64180 224 + . . scaffold39122 GLEAN mRNA 1540 14332 0.999898 - . ID=CGI_10003163; scaffold39122 GLEAN promoter 14333 15332 0.999898 - . ID=CGI_10003163; scaffold39122 GLEAN mRNA 14352 31313 0.999675 - . ID=CGI_10003164; scaffold39122 TRF Tandem_Repeat 23553 23696 69 + . . scaffold39122 TRF Tandem_Repeat 24699 25601 1346 + . . scaffold39122 TRF Tandem_Repeat 25922 26084 265 + . . scaffold39122 TRF Tandem_Repeat 30734 30772 78 + . . scaffold39122 TRF Tandem_Repeat 30954 31016 126 + . . scaffold39122 GLEAN promoter 31314 32313 0.999675 - . ID=CGI_10003164; scaffold39122 GLEAN promoter 35537 36536 0.999652 + . ID=CGI_10003165; scaffold39122 GLEAN mRNA 36537 41010 0.999652 + . ID=CGI_10003165; scaffold39122 TRF Tandem_Repeat 44503 44573 97 + . . scaffold39122 TRF Tandem_Repeat 44503 44580 112 + . . scaffold39122 TRF Tandem_Repeat 44506 44579 87 + . . scaffold39122 WUBlastX LTR_Gypsy 52959 53630 131 - . . scaffold39122 WUBlastX LTR_Gypsy-Cigr 52977 53513 199 - . . scaffold39122 WUBlastX LINE_L1-Tx1 59848 61149 857 + . . scaffold39122 WUBlastX LINE_RTE-X 63423 63695 59 + . . scaffold39126 GLEAN promoter 2989 3988 0.68165 + . ID=CGI_10003195; scaffold39126 WUBlastX DNA_TcMar-Marin 3536 3694 40 - . . scaffold39126 WUBlastX DNA_TcMar-Marin 3575 3700 49 - . . scaffold39126 WUBlastX DNA_TcMar-Marin 3593 3694 65 - . . scaffold39126 GLEAN mRNA 3989 32461 0.68165 + . ID=CGI_10003195; scaffold39126 TRF Tandem_Repeat 16819 16846 56 + . . scaffold39126 TRF Tandem_Repeat 23170 23215 92 + . . scaffold39126 GLEAN mRNA 24243 32467 1 - . ID=CGI_10003196; scaffold39126 GLEAN promoter 32468 33467 1 - . ID=CGI_10003196; scaffold39126 WUBlastX LINE_L2 39319 39639 36 - . . scaffold39126 WUBlastX LINE_L2 39319 39507 61 - . . scaffold39126 TRF Tandem_Repeat 48666 48738 119 + . . scaffold39126 TRF Tandem_Repeat 51357 51414 116 + . . scaffold39126 TRF Tandem_Repeat 51897 51924 56 + . . scaffold39126 TRF Tandem_Repeat 53373 53411 51 + . . scaffold39126 TRF Tandem_Repeat 53702 53881 239 + . . scaffold39126 TRF Tandem_Repeat 53702 53881 229 + . . scaffold39126 TRF Tandem_Repeat 53702 53881 229 + . . scaffold39126 WUBlastX LINE_L1-Tx1 53903 54370 103 - . . scaffold39126 WUBlastX LINE_L1-Tx1 54032 54496 86 - . . scaffold39126 WUBlastX LINE_L1-Tx1 54448 55449 161 - . . scaffold39126 WUBlastX LINE_L1-Tx1 55431 55721 171 - . . scaffold39126 WUBlastX LINE_L1 55714 56157 117 - . . scaffold39126 WUBlastX LINE_L1 55801 56235 107 - . . scaffold39126 WUBlastX LINE_L1-Tx1 55807 56154 303 - . . scaffold39126 WUBlastX LINE_L1-Tx1 56157 56315 96 - . . scaffold39126 TRF Tandem_Repeat 56831 58937 3077 + . . scaffold39126 TRF Tandem_Repeat 59661 60916 1813 + . . scaffold39126 WUBlastX LINE_L1 63368 64387 208 - . . scaffold39126 WUBlastX LINE_L1-Tx1 65208 65465 76 - . . scaffold39126 WUBlastX LINE_L1-Tx1 65247 65465 134 - . . scaffold39134 GLEAN promoter 1093 2092 0.456821 + . ID=CGI_10003183; scaffold39134 GLEAN mRNA 2057 15679 0.556498 - . ID=CGI_10003182; scaffold39134 GLEAN mRNA 2093 6941 0.456821 + . ID=CGI_10003183; scaffold39134 TRF Tandem_Repeat 11401 12290 1192 + . . scaffold39134 GLEAN promoter 15680 16679 0.556498 - . ID=CGI_10003182; scaffold39134 GLEAN promoter 16537 17536 1 + . ID=CGI_10003184; scaffold39134 GLEAN mRNA 17537 30616 1 + . ID=CGI_10003184; scaffold39134 TRF Tandem_Repeat 22270 23332 1740 + . . scaffold39134 TRF Tandem_Repeat 22673 22746 57 + . . scaffold39134 TRF Tandem_Repeat 22767 22837 51 + . . scaffold39134 TRF Tandem_Repeat 26705 26769 121 + . . scaffold39134 TRF Tandem_Repeat 27257 27300 81 + . . scaffold39134 GLEAN mRNA 31130 34483 0.998241 - . ID=CGI_10003185; scaffold39134 GLEAN promoter 34484 35483 0.998241 - . ID=CGI_10003185; scaffold39134 GLEAN mRNA 34908 61448 0.78688 - . ID=CGI_10003186; scaffold39134 TRF Tandem_Repeat 39779 39843 87 + . . scaffold39134 WUBlastX LINE_RTE-X 41899 42348 57 - . . scaffold39134 WUBlastX LINE_RTE-X 42064 42348 89 - . . scaffold39134 WUBlastX LINE_RTE-X 42067 42399 52 - . . scaffold39134 WUBlastX LINE_RTE-X 42390 42575 47 - . . scaffold39134 WUBlastX LTR_Gypsy 45196 45354 69 + . . scaffold39134 WUBlastX LTR_Gypsy 45350 45676 91 + . . scaffold39134 WUBlastX LTR_Gypsy 45356 45631 168 + . . scaffold39134 WUBlastX LTR_Gypsy 45976 46020 22 + . . scaffold39134 WUBlastX LTR_Gypsy 48751 48876 28 + . . scaffold39134 WUBlastX LTR_Gypsy 48763 48900 25 + . . scaffold39134 WUBlastX LTR_Gypsy 48923 49456 178 + . . scaffold39134 WUBlastX LTR_Gypsy 49013 49435 189 + . . scaffold39134 WUBlastX LTR_Gypsy 49420 49656 145 + . . scaffold39134 WUBlastX LTR_Gypsy 49506 50201 191 + . . scaffold39134 WUBlastX LTR_Gypsy 49686 50204 319 + . . scaffold39134 WUBlastX LTR_Gypsy 50110 50523 83 + . . scaffold39134 WUBlastX LTR_Gypsy 50197 50379 117 + . . scaffold39134 TRF Tandem_Repeat 50783 50838 112 + . . scaffold39134 WUBlastX RC_Helitron 54674 55141 43 - . . scaffold39134 TRF Tandem_Repeat 55333 56368 1337 + . . scaffold39134 TRF Tandem_Repeat 57827 57873 62 + . . scaffold39134 GLEAN promoter 61449 62448 0.78688 - . ID=CGI_10003186; scaffold39142 WUBlastX LINE_L1-Tx1 673 873 64 + . . scaffold39142 WUBlastX LINE_L1-Tx1 821 1117 88 + . . scaffold39142 WUBlastX LINE_L1 917 1198 78 + . . scaffold39142 TRF Tandem_Repeat 1580 3065 2316 + . . scaffold39142 TRF Tandem_Repeat 1580 3065 2325 + . . scaffold39142 TRF Tandem_Repeat 3272 3318 69 + . . scaffold39142 TRF Tandem_Repeat 36992 37359 495 + . . scaffold39142 TRF Tandem_Repeat 36994 37359 426 + . . scaffold39142 TRF Tandem_Repeat 36994 37359 426 + . . scaffold39142 TRF Tandem_Repeat 38021 38302 296 + . . scaffold39142 TRF Tandem_Repeat 38021 38302 420 + . . scaffold39142 TRF Tandem_Repeat 38021 38304 306 + . . scaffold39142 GLEAN mRNA 39058 47758 1 - . ID=CGI_10003197; scaffold39142 GLEAN promoter 47759 48758 1 - . ID=CGI_10003197; scaffold39142 TRF Tandem_Repeat 57392 57427 72 + . . scaffold39142 WUBlastX LTR_DIRS 64063 64791 311 - . . scaffold39142 WUBlastX LTR_DIRS 64776 65426 313 - . . scaffold39142 WUBlastX LTR_DIRS 65441 66391 600 - . . scaffold39144 WUBlastX DNA_Helitron 1946 3997 588 + . . scaffold39144 WUBlastX RC_Helitron 2042 3556 643 + . . scaffold39144 TRF Tandem_Repeat 36320 36383 128 + . . scaffold39144 TRF Tandem_Repeat 40932 40980 80 + . . scaffold39144 WUBlastX DNA_Harbinger 52569 53261 88 + . . scaffold39144 WUBlastX DNA_Harbinger 52731 53363 308 + . . scaffold39144 WUBlastX DNA_Harbinger 52833 53459 64 + . . scaffold39144 WUBlastX DNA_Harbinger 53386 53619 33 + . . scaffold39144 TRF Tandem_Repeat 60353 60399 94 + . . scaffold39144 TRF Tandem_Repeat 66388 66447 75 + . . scaffold39156 GLEAN mRNA 6091 30592 0.650648 - . ID=CGI_10003190; scaffold39156 GLEAN promoter 25487 26486 0.999395 + . ID=CGI_10003191; scaffold39156 GLEAN mRNA 26487 34971 0.999395 + . ID=CGI_10003191; scaffold39156 GLEAN promoter 30593 31592 0.650648 - . ID=CGI_10003190; scaffold39156 GLEAN promoter 39877 40876 0.726703 + . ID=CGI_10003192; scaffold39156 GLEAN mRNA 40877 62650 0.726703 + . ID=CGI_10003192; scaffold39158 TRF Tandem_Repeat 788 892 120 + . . scaffold39158 TRF Tandem_Repeat 790 856 116 + . . scaffold39158 TRF Tandem_Repeat 794 892 117 + . . scaffold39158 TRF Tandem_Repeat 854 900 94 + . . scaffold39158 GLEAN mRNA 7318 11747 0.961217 - . ID=CGI_10003198; scaffold39158 TRF Tandem_Repeat 11164 11218 58 + . . scaffold39158 GLEAN promoter 11748 12747 0.961217 - . ID=CGI_10003198; scaffold39158 GLEAN mRNA 11749 14761 0.544852 - . ID=CGI_10003199; scaffold39158 GLEAN promoter 14762 15761 0.544852 - . ID=CGI_10003199; scaffold39158 TRF Tandem_Repeat 29211 29264 108 + . . scaffold39158 TRF Tandem_Repeat 32569 32635 125 + . . scaffold39158 GLEAN mRNA 40174 42706 0.588181 - . ID=CGI_10003200; scaffold39158 GLEAN promoter 42707 43706 0.588181 - . ID=CGI_10003200; scaffold39158 TRF Tandem_Repeat 43457 43530 139 + . . scaffold39158 TRF Tandem_Repeat 43530 43559 60 + . . scaffold39158 TRF Tandem_Repeat 43822 43858 74 + . . scaffold39158 TRF Tandem_Repeat 44984 45170 110 + . . scaffold39158 TRF Tandem_Repeat 47213 47254 75 + . . scaffold39158 TRF Tandem_Repeat 47386 47693 417 + . . scaffold39158 TRF Tandem_Repeat 48294 48341 96 + . . scaffold39158 TRF Tandem_Repeat 53299 53331 66 + . . scaffold39158 TRF Tandem_Repeat 53617 53650 68 + . . scaffold39158 TRF Tandem_Repeat 53952 53992 82 + . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 60727 60942 37 - . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 60851 61291 124 - . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 60948 62087 525 - . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 65841 65936 50 - . . scaffold39158 WUBlastX LTR_Gypsy-Troyk 65938 66117 126 - . . scaffold39174 WUBlastX LTR_Gypsy 12430 12534 21 + . . scaffold39174 WUBlastX LTR_Gypsy 12478 12549 21 + . . scaffold39174 WUBlastX LTR_DIRS 12490 13200 136 + . . scaffold39174 WUBlastX LTR_Gypsy 13151 13822 27 + . . scaffold39174 WUBlastX LTR_DIRS 13325 15187 839 + . . scaffold39174 WUBlastX LTR_DIRS 15492 16439 479 + . . scaffold39174 TRF Tandem_Repeat 35284 35330 85 + . . scaffold39174 GLEAN promoter 44733 45732 0.801757 + . ID=CGI_10003256; scaffold39174 GLEAN mRNA 45733 58896 0.801757 + . ID=CGI_10003256; scaffold39174 TRF Tandem_Repeat 49493 49559 89 + . . scaffold39174 TRF Tandem_Repeat 51948 51986 78 + . . scaffold39174 TRF Tandem_Repeat 52718 52784 89 + . . scaffold39174 GLEAN promoter 59896 60895 0.437122 + . ID=CGI_10003257; scaffold39174 TRF Tandem_Repeat 60735 60762 56 + . . scaffold39174 GLEAN mRNA 60896 64294 0.437122 + . ID=CGI_10003257; scaffold39174 GLEAN mRNA 62197 66798 0.979043 - . ID=CGI_10003258; scaffold39174 GLEAN promoter 66799 67798 0.979043 - . ID=CGI_10003258; scaffold39176 GLEAN mRNA 42517 52773 0.999958 - . ID=CGI_10003202; scaffold39176 GLEAN promoter 52159 53158 0.991606 + . ID=CGI_10003203; scaffold39176 GLEAN promoter 52774 53773 0.999958 - . ID=CGI_10003202; scaffold39176 GLEAN mRNA 53159 58265 0.991606 + . ID=CGI_10003203; scaffold39176 GLEAN promoter 61996 62995 0.997339 + . ID=CGI_10003204; scaffold39176 GLEAN mRNA 62996 65699 0.997339 + . ID=CGI_10003204; scaffold39180 GLEAN mRNA 139 25318 0.999224 - . ID=CGI_10003219; scaffold39180 GLEAN promoter 25319 26318 0.999224 - . ID=CGI_10003219; scaffold39180 WUBlastX LTR_Gypsy 26966 27010 23 + . . scaffold39180 WUBlastX LTR_Gypsy 27334 27444 31 + . . scaffold39180 WUBlastX LTR_Gypsy 27659 27874 104 + . . scaffold39180 WUBlastX LTR_Gypsy 27899 27973 39 + . . scaffold39180 TRF Tandem_Repeat 37941 37995 110 + . . scaffold39180 GLEAN mRNA 50644 66987 1 - . ID=CGI_10003220; scaffold39180 TRF Tandem_Repeat 65421 65523 77 + . . scaffold39180 GLEAN promoter 66988 67077 1 - . ID=CGI_10003220; scaffold39184 GLEAN mRNA 48478 60069 0.893106 - . ID=CGI_10003221; scaffold39184 GLEAN promoter 60070 61069 0.893106 - . ID=CGI_10003221; scaffold39196 GLEAN promoter 922 1921 0.499951 + . ID=CGI_10003214; scaffold39196 GLEAN mRNA 1922 16148 0.499951 + . ID=CGI_10003214; scaffold39196 GLEAN mRNA 18014 59804 0.5589 - . ID=CGI_10003215; scaffold39196 GLEAN promoter 19999 20998 0.999968 + . ID=CGI_10003216; scaffold39196 GLEAN mRNA 20999 26289 0.999968 + . ID=CGI_10003216; scaffold39196 WUBlastX LTR_Gypsy 22444 24036 1043 + . . scaffold39196 WUBlastX LTR_Gypsy 24003 25796 1285 + . . scaffold39196 GLEAN promoter 25443 26442 0.717973 + . ID=CGI_10003217; scaffold39196 WUBlastX LTR_ERVK 25931 25993 22 + . . scaffold39196 GLEAN mRNA 26443 26838 0.717973 + . ID=CGI_10003217; scaffold39196 TRF Tandem_Repeat 29123 30008 1047 + . . scaffold39196 TRF Tandem_Repeat 31073 31114 50 + . . scaffold39196 WUBlastX RC_Helitron 37169 37273 24 - . . scaffold39196 WUBlastX RC_Helitron 37675 38247 113 - . . scaffold39196 WUBlastX RC_Helitron 37921 38223 189 - . . scaffold39196 WUBlastX RC_Helitron 37939 38328 137 - . . scaffold39196 WUBlastX RC_Helitron 38223 38399 91 - . . scaffold39196 WUBlastX RC_Helitron 38396 38824 45 - . . scaffold39196 GLEAN promoter 38677 39676 0.583111 + . ID=CGI_10003218; scaffold39196 WUBlastX RC_Helitron 38815 39003 69 - . . scaffold39196 GLEAN mRNA 39677 52332 0.583111 + . ID=CGI_10003218; scaffold39196 TRF Tandem_Repeat 43354 43495 96 + . . scaffold39196 TRF Tandem_Repeat 43606 43631 52 + . . scaffold39196 WUBlastX DNA_Merlin 49826 50152 73 + . . scaffold39196 WUBlastX DNA_Merlin 50161 50250 34 + . . scaffold39196 WUBlastX DNA_Merlin 50185 50262 40 + . . scaffold39196 WUBlastX DNA_Merlin 50391 50810 158 + . . scaffold39196 GLEAN promoter 59805 60804 0.5589 - . ID=CGI_10003215; scaffold39196 WUBlastX DNA_Maverick 60024 60404 215 + . . scaffold39196 WUBlastX DNA_Maverick 61164 62672 949 - . . scaffold39196 WUBlastX DNA_Maverick 62629 62763 48 - . . scaffold39196 WUBlastX DNA_Maverick 62912 63220 111 - . . scaffold39196 WUBlastX DNA_Maverick 63149 63370 72 - . . scaffold39196 WUBlastX DNA_Maverick 63260 64048 335 - . . scaffold39196 WUBlastX DNA_Maverick 63272 64786 201 - . . scaffold39196 WUBlastX DNA_Maverick 63305 64417 275 - . . scaffold39196 WUBlastX DNA_Maverick 63305 63967 375 - . . scaffold39196 WUBlastX DNA_Maverick 64283 64891 100 - . . scaffold39196 WUBlastX DNA_Maverick 65143 65760 67 - . . scaffold39196 WUBlastX DNA_Maverick 65227 65646 83 - . . scaffold39196 TRF Tandem_Repeat 66005 66029 50 + . . scaffold39198 WUBlastX LINE_L1-Tx1 27326 27670 75 - . . scaffold39198 WUBlastX LINE_L1-Tx1 27335 27589 84 - . . scaffold39198 WUBlastX LINE_L1-Tx1 27344 27811 41 - . . scaffold39198 WUBlastX LINE_L1-Tx1 27362 27733 47 - . . scaffold39198 WUBlastX LINE_L1-Tx1 27686 27883 23 - . . scaffold39198 TRF Tandem_Repeat 28080 28108 58 + . . scaffold39198 TRF Tandem_Repeat 31184 31216 66 + . . scaffold39198 TRF Tandem_Repeat 34580 34608 58 + . . scaffold39198 WUBlastX LINE_L1-Tx1 34805 35002 23 + . . scaffold39198 WUBlastX LINE_L1-Tx1 34877 35344 41 + . . scaffold39198 WUBlastX LINE_L1-Tx1 34955 35326 47 + . . scaffold39198 WUBlastX LINE_L1-Tx1 35018 35362 75 + . . scaffold39198 WUBlastX LINE_L1-Tx1 35099 35353 84 + . . scaffold39198 TRF Tandem_Repeat 40639 40702 110 + . . scaffold39198 GLEAN promoter 41187 42186 0.679892 + . ID=CGI_10003207; scaffold39198 GLEAN mRNA 42187 50619 0.679892 + . ID=CGI_10003207; scaffold39198 TRF Tandem_Repeat 46312 46349 76 + . . scaffold39198 TRF Tandem_Repeat 46413 46444 55 + . . scaffold39198 TRF Tandem_Repeat 46494 46533 80 + . . scaffold39198 TRF Tandem_Repeat 46714 46758 90 + . . scaffold39198 TRF Tandem_Repeat 46870 46903 68 + . . scaffold39198 TRF Tandem_Repeat 51653 51686 59 + . . scaffold39198 TRF Tandem_Repeat 52642 52679 58 + . . scaffold39198 GLEAN promoter 55348 56347 1 + . ID=CGI_10003208; scaffold39198 GLEAN mRNA 56348 58128 1 + . ID=CGI_10003208; scaffold39198 TRF Tandem_Repeat 56481 56591 88 + . . scaffold39198 TRF Tandem_Repeat 56500 56712 356 + . . scaffold39198 TRF Tandem_Repeat 56516 56710 141 + . . scaffold39198 GLEAN promoter 57182 58181 0.508261 + . ID=CGI_10003209; scaffold39198 GLEAN promoter 58024 59023 0.999448 + . ID=CGI_10003210; scaffold39198 GLEAN mRNA 58182 58855 0.508261 + . ID=CGI_10003209; scaffold39198 GLEAN mRNA 59024 59251 0.999448 + . ID=CGI_10003210; scaffold39198 TRF Tandem_Repeat 61283 61422 122 + . . scaffold39198 TRF Tandem_Repeat 61876 62015 122 + . . scaffold392 GLEAN promoter 1465 2464 0.465293 + . ID=CGI_10024201; scaffold392 GLEAN mRNA 2465 9725 0.465293 + . ID=CGI_10024201; scaffold392 TRF Tandem_Repeat 11717 11770 99 + . . scaffold392 GLEAN promoter 16729 17728 0.576401 + . ID=CGI_10024202; scaffold392 GLEAN mRNA 17729 69671 0.576401 + . ID=CGI_10024202; scaffold392 TRF Tandem_Repeat 22341 22478 93 + . . scaffold392 TRF Tandem_Repeat 22370 22479 112 + . . scaffold392 WUBlastX LTR_Gypsy 35306 35866 78 - . . scaffold392 WUBlastX LTR_Gypsy-Cigr 35561 35860 92 - . . scaffold392 WUBlastX LTR_Gypsy 35878 36018 82 - . . scaffold392 WUBlastX LTR_Gypsy 36015 36407 21 - . . scaffold392 WUBlastX LTR_Gypsy 36015 36191 64 - . . scaffold392 WUBlastX LTR_Gypsy 36024 36317 25 - . . scaffold392 WUBlastX LTR_Gypsy 36173 36241 30 - . . scaffold392 WUBlastX LTR_Gypsy 37918 38169 65 - . . scaffold392 WUBlastX LTR_Gypsy-Cigr 37921 38124 83 - . . scaffold392 WUBlastX LTR_Gypsy 37975 38286 22 - . . scaffold392 WUBlastX LTR_Gypsy 38338 38472 96 - . . scaffold392 WUBlastX LTR_Gypsy 38338 38574 24 - . . scaffold392 WUBlastX LTR_Gypsy 38338 38520 50 - . . scaffold392 TRF Tandem_Repeat 39125 39186 90 + . . scaffold392 TRF Tandem_Repeat 40648 40701 99 + . . scaffold392 TRF Tandem_Repeat 45272 45315 88 + . . scaffold392 WUBlastX DNA_Kolobok 46125 46229 24 + . . scaffold392 WUBlastX DNA_Kolobok 46393 46623 25 + . . scaffold392 WUBlastX DNA_Kolobok 46396 46590 28 + . . scaffold392 TRF Tandem_Repeat 50052 50129 156 + . . scaffold392 TRF Tandem_Repeat 53504 53559 58 + . . scaffold392 TRF Tandem_Repeat 64413 64528 53 + . . scaffold392 TRF Tandem_Repeat 64413 64473 50 + . . scaffold392 TRF Tandem_Repeat 65712 65756 67 + . . scaffold392 TRF Tandem_Repeat 66663 66703 82 + . . scaffold392 TRF Tandem_Repeat 67201 67384 98 + . . scaffold392 TRF Tandem_Repeat 67284 67374 91 + . . scaffold392 TRF Tandem_Repeat 67360 67420 50 + . . scaffold392 GLEAN mRNA 88876 89919 0.733296 - . ID=CGI_10024203; scaffold392 TRF Tandem_Repeat 89236 89608 376 + . . scaffold392 WUBlastX LTR_Copia 89617 89760 22 - . . scaffold392 GLEAN promoter 89920 90919 0.733296 - . ID=CGI_10024203; scaffold392 WUBlastX LTR_Copia 90144 90902 96 - . . scaffold392 WUBlastX DNA_Maverick 90261 90971 142 - . . scaffold392 WUBlastX LTR_ERV1 90462 91298 159 - . . scaffold392 WUBlastX LTR_Gypsy 90498 91556 98 - . . scaffold392 WUBlastX DNA_Maverick 90510 91046 180 - . . scaffold392 TRF Tandem_Repeat 91796 91840 90 + . . scaffold392 TRF Tandem_Repeat 98467 98523 114 + . . scaffold392 WUBlastX LINE_RTE-X 105079 105255 54 - . . scaffold392 WUBlastX LINE_RTE-X 105097 105330 43 - . . scaffold392 WUBlastX LTR_Gypsy 125034 125897 59 - . . scaffold392 WUBlastX LTR_ERVK 125517 125780 73 - . . scaffold392 WUBlastX LTR_Gypsy 125559 125897 248 - . . scaffold392 WUBlastX LTR_ERV1 126342 126422 22 - . . scaffold392 WUBlastX LTR_Gypsy 126695 126976 114 - . . scaffold392 WUBlastX LTR_Gypsy-Cigr 126761 126979 124 - . . scaffold392 WUBlastX LTR_Gypsy 126761 127042 91 - . . scaffold392 WUBlastX LTR_Gypsy 127029 127184 53 - . . scaffold392 WUBlastX LTR_Gypsy 127174 127656 262 - . . scaffold392 WUBlastX LTR_Gypsy-Cigr 127312 127722 297 - . . scaffold392 WUBlastX LTR_Gypsy-Cigr 127315 127656 319 - . . scaffold392 WUBlastX LTR_Gypsy 127655 128140 151 - . . scaffold392 WUBlastX LTR_Gypsy 127664 128065 265 - . . scaffold392 TRF Tandem_Repeat 132339 132402 57 + . . scaffold392 TRF Tandem_Repeat 133668 133930 399 + . . scaffold392 TRF Tandem_Repeat 134483 134521 51 + . . scaffold392 TRF Tandem_Repeat 158778 158818 57 + . . scaffold392 TRF Tandem_Repeat 164708 164758 52 + . . scaffold392 TRF Tandem_Repeat 164964 165012 73 + . . scaffold392 TRF Tandem_Repeat 165077 165287 178 + . . scaffold392 TRF Tandem_Repeat 165089 165417 186 + . . scaffold392 TRF Tandem_Repeat 165159 165218 61 + . . scaffold392 TRF Tandem_Repeat 165258 165417 115 + . . scaffold392 TRF Tandem_Repeat 167271 167396 110 + . . scaffold392 TRF Tandem_Repeat 167297 167454 58 + . . scaffold392 TRF Tandem_Repeat 167297 167434 115 + . . scaffold392 TRF Tandem_Repeat 167341 167454 74 + . . scaffold392 TRF Tandem_Repeat 167404 167576 102 + . . scaffold392 TRF Tandem_Repeat 168380 168411 64 + . . scaffold392 GLEAN promoter 172998 173997 0.999978 + . ID=CGI_10024204; scaffold392 GLEAN mRNA 173998 183271 0.999978 + . ID=CGI_10024204; scaffold392 TRF Tandem_Repeat 176274 176327 108 + . . scaffold392 TRF Tandem_Repeat 179196 179241 83 + . . scaffold392 TRF Tandem_Repeat 179324 179640 114 + . . scaffold392 GLEAN mRNA 199677 203260 0.670449 - . ID=CGI_10024205; scaffold392 GLEAN promoter 203261 204260 0.670449 - . ID=CGI_10024205; scaffold392 GLEAN promoter 209143 210142 0.999372 + . ID=CGI_10024206; scaffold392 GLEAN mRNA 210143 210364 0.999372 + . ID=CGI_10024206; scaffold392 WUBlastX LTR_Ngaro 211223 211594 68 - . . scaffold392 WUBlastX LTR_Ngaro 211304 211588 117 - . . scaffold392 WUBlastX LTR_Ngaro 211361 211585 138 - . . scaffold392 GLEAN promoter 213729 214728 0.99977 + . ID=CGI_10024207; scaffold392 GLEAN mRNA 214729 217584 0.99977 + . ID=CGI_10024207; scaffold392 TRF Tandem_Repeat 220642 220667 52 + . . scaffold392 GLEAN mRNA 224351 233548 0.54165 - . ID=CGI_10024208; scaffold392 GLEAN promoter 233549 234548 0.54165 - . ID=CGI_10024208; scaffold392 GLEAN promoter 251175 252174 0.999791 + . ID=CGI_10024209; scaffold392 GLEAN mRNA 252175 254536 0.999791 + . ID=CGI_10024209; scaffold392 GLEAN promoter 254380 255379 0.607341 + . ID=CGI_10024210; scaffold392 GLEAN mRNA 255380 263524 0.607341 + . ID=CGI_10024210; scaffold392 TRF Tandem_Repeat 261588 261901 458 + . . scaffold392 TRF Tandem_Repeat 273295 274670 1877 + . . scaffold392 TRF Tandem_Repeat 273295 274670 1895 + . . scaffold392 TRF Tandem_Repeat 278330 279413 1488 + . . scaffold392 TRF Tandem_Repeat 280820 280861 50 + . . scaffold392 TRF Tandem_Repeat 283387 283425 53 + . . scaffold392 TRF Tandem_Repeat 284538 284603 61 + . . scaffold392 WUBlastX LINE_RTE-X 293366 293656 51 - . . scaffold392 WUBlastX LINE_RTE-X 293468 293737 61 - . . scaffold392 WUBlastX LINE_RTE-X 293486 293656 77 - . . scaffold392 WUBlastX LINE_L2 300929 301246 29 - . . scaffold392 WUBlastX LTR_Ngaro 303783 303968 38 - . . scaffold392 WUBlastX LTR_Ngaro 303980 304324 176 - . . scaffold392 WUBlastX LTR_Ngaro 304899 304985 35 - . . scaffold392 WUBlastX LTR_Ngaro 305286 305738 111 - . . scaffold392 GLEAN mRNA 309196 322775 0.927069 - . ID=CGI_10024211; scaffold392 TRF Tandem_Repeat 321292 321352 122 + . . scaffold392 GLEAN promoter 322342 323341 1 + . ID=CGI_10024212; scaffold392 GLEAN promoter 322776 323775 0.927069 - . ID=CGI_10024211; scaffold392 GLEAN mRNA 323342 328165 1 + . ID=CGI_10024212; scaffold392 TRF Tandem_Repeat 328392 328416 50 + . . scaffold392 TRF Tandem_Repeat 329289 329334 92 + . . scaffold392 GLEAN mRNA 329771 333827 1 - . ID=CGI_10024213; scaffold392 GLEAN promoter 333083 334082 0.54474 + . ID=CGI_10024214; scaffold392 GLEAN promoter 333828 334827 1 - . ID=CGI_10024213; scaffold392 GLEAN mRNA 334083 342178 0.54474 + . ID=CGI_10024214; scaffold392 WUBlastX LINE_RTE-X 341965 342345 57 - . . scaffold392 TRF Tandem_Repeat 366289 366314 52 + . . scaffold392 TRF Tandem_Repeat 369947 369981 70 + . . scaffold392 GLEAN mRNA 404383 404670 0.733495 - . ID=CGI_10024215; scaffold392 GLEAN promoter 404671 405670 0.733495 - . ID=CGI_10024215; scaffold392 TRF Tandem_Repeat 409160 409749 975 + . . scaffold392 GLEAN promoter 418040 419039 0.701545 + . ID=CGI_10024216; scaffold392 TRF Tandem_Repeat 418299 418331 52 + . . scaffold392 GLEAN mRNA 419040 422893 0.701545 + . ID=CGI_10024216; scaffold392 WUBlastX LINE_L2 422645 422854 64 + . . scaffold392 GLEAN promoter 424115 425114 0.63357 + . ID=CGI_10024217; scaffold392 WUBlastX LINE_L2 424183 424353 92 - . . scaffold392 GLEAN mRNA 425115 425911 0.63357 + . ID=CGI_10024217; scaffold392 GLEAN promoter 425913 426912 0.44936 + . ID=CGI_10024218; scaffold392 GLEAN mRNA 426913 455766 0.44936 + . ID=CGI_10024218; scaffold392 WUBlastX LINE_L1 444383 444880 30 + . . scaffold392 WUBlastX LINE_L2 444509 445024 175 + . . scaffold392 WUBlastX LINE_RTE-X 448189 448626 45 - . . scaffold392 WUBlastX LINE_RTE-X 448312 448623 70 - . . scaffold392 WUBlastX LINE_RTE-X 448661 450142 657 - . . scaffold392 WUBlastX LINE_RTE-BovB 448886 450448 269 - . . scaffold392 WUBlastX LINE_RTE-X 450453 452798 669 - . . scaffold392 TRF Tandem_Repeat 459334 459378 90 + . . scaffold392 GLEAN mRNA 461301 470885 0.701278 - . ID=CGI_10024219; scaffold392 GLEAN promoter 470886 471885 0.701278 - . ID=CGI_10024219; scaffold392 WUBlastX LINE_Penelope 474496 474726 33 - . . scaffold392 WUBlastX LINE_L1-Tx1 477335 478240 54 - . . scaffold392 WUBlastX LINE_L1 477551 477799 67 - . . scaffold392 WUBlastX LINE_L1 478234 478290 28 - . . scaffold392 WUBlastX LINE_L1-Tx1 478237 478359 28 - . . scaffold392 WUBlastX LINE_L1 478317 478415 24 - . . scaffold392 WUBlastX LINE_L1-Tx1 478434 478724 45 - . . scaffold392 WUBlastX LINE_L1 478497 478616 70 - . . scaffold392 WUBlastX LINE_L1 478503 478835 39 - . . scaffold392 WUBlastX LINE_L1 478503 478748 51 - . . scaffold392 WUBlastX LINE_L1 478868 478951 43 - . . scaffold392 WUBlastX LINE_L1 478963 478998 21 - . . scaffold392 WUBlastX LINE_L1 479210 479383 26 - . . scaffold392 WUBlastX LINE_L1 479598 479681 21 - . . scaffold392 WUBlastX LINE_Penelope 480369 480980 80 - . . scaffold392 WUBlastX LINE_Penelope 480474 480995 173 - . . scaffold392 WUBlastX LINE_Penelope 480567 481007 189 - . . scaffold392 WUBlastX LINE_Penelope 480573 481142 98 - . . scaffold392 WUBlastX LINE_Penelope 481104 481334 36 - . . scaffold392 WUBlastX LINE_Penelope 481104 481271 85 - . . scaffold392 WUBlastX LINE_Penelope 481316 481918 21 - . . scaffold392 WUBlastX LINE_Penelope 481337 481786 78 - . . scaffold392 WUBlastX LINE_Penelope 482237 482749 23 + . . scaffold392 WUBlastX LINE_Penelope 482790 482999 42 + . . scaffold392 GLEAN mRNA 483420 499296 0.999851 - . ID=CGI_10024220; scaffold392 TRF Tandem_Repeat 483510 483546 56 + . . scaffold392 TRF Tandem_Repeat 485824 485857 50 + . . scaffold392 GLEAN promoter 491349 492348 0.999511 + . ID=CGI_10024221; scaffold392 GLEAN mRNA 492349 492681 0.999511 + . ID=CGI_10024221; scaffold392 TRF Tandem_Repeat 494642 494698 114 + . . scaffold392 TRF Tandem_Repeat 494890 494953 65 + . . scaffold392 GLEAN promoter 499297 500296 0.999851 - . ID=CGI_10024220; scaffold392 GLEAN promoter 508201 509200 0.542609 + . ID=CGI_10024222; scaffold392 GLEAN mRNA 509201 534293 0.542609 + . ID=CGI_10024222; scaffold392 WUBlastX LINE_L2 509663 510157 75 - . . scaffold392 TRF Tandem_Repeat 529527 529590 128 + . . scaffold392 GLEAN mRNA 539837 562721 1 - . ID=CGI_10024223; scaffold392 TRF Tandem_Repeat 542458 542529 71 + . . scaffold392 TRF Tandem_Repeat 548547 548585 51 + . . scaffold392 TRF Tandem_Repeat 550848 550876 58 + . . scaffold392 TRF Tandem_Repeat 558869 558913 90 + . . scaffold392 TRF Tandem_Repeat 560978 561024 76 + . . scaffold392 TRF Tandem_Repeat 561068 561120 106 + . . scaffold392 TRF Tandem_Repeat 561164 561208 90 + . . scaffold392 TRF Tandem_Repeat 561420 561444 50 + . . scaffold392 GLEAN promoter 562722 563721 1 - . ID=CGI_10024223; scaffold392 GLEAN mRNA 568263 580539 0.974514 - . ID=CGI_10024224; scaffold392 TRF Tandem_Repeat 570416 570529 149 + . . scaffold392 TRF Tandem_Repeat 576664 576703 71 + . . scaffold392 TRF Tandem_Repeat 577699 577927 278 + . . scaffold392 TRF Tandem_Repeat 580381 580413 66 + . . scaffold392 GLEAN promoter 580540 581539 0.974514 - . ID=CGI_10024224; scaffold392 TRF Tandem_Repeat 581409 581475 134 + . . scaffold392 TRF Tandem_Repeat 581734 581798 130 + . . scaffold392 TRF Tandem_Repeat 586284 586334 79 + . . scaffold392 TRF Tandem_Repeat 589605 589647 68 + . . scaffold392 TRF Tandem_Repeat 592389 592426 76 + . . scaffold392 TRF Tandem_Repeat 604789 604831 86 + . . scaffold392 GLEAN promoter 608040 609039 0.969617 + . ID=CGI_10024225; scaffold392 GLEAN mRNA 609040 610179 0.969617 + . ID=CGI_10024225; scaffold392 TRF Tandem_Repeat 620022 620046 50 + . . scaffold392 GLEAN mRNA 621603 627251 0.889923 - . ID=CGI_10024226; scaffold392 TRF Tandem_Repeat 623982 624034 52 + . . scaffold392 GLEAN promoter 627252 628251 0.889923 - . ID=CGI_10024226; scaffold392 GLEAN mRNA 644206 648126 1 - . ID=CGI_10024227; scaffold392 GLEAN promoter 648127 649126 1 - . ID=CGI_10024227; scaffold392 GLEAN promoter 652303 653302 0.830987 + . ID=CGI_10024228; scaffold392 TRF Tandem_Repeat 652631 652667 67 + . . scaffold392 GLEAN mRNA 653303 669049 0.830987 + . ID=CGI_10024228; scaffold392 TRF Tandem_Repeat 658172 658257 54 + . . scaffold392 GLEAN mRNA 681989 688013 1 - . ID=CGI_10024229; scaffold392 GLEAN promoter 688014 689013 1 - . ID=CGI_10024229; scaffold392 TRF Tandem_Repeat 688042 688291 108 + . . scaffold392 GLEAN mRNA 689328 690971 1 - . ID=CGI_10024230; scaffold392 GLEAN promoter 690972 691971 1 - . ID=CGI_10024230; scaffold392 GLEAN mRNA 693218 694269 1 - . ID=CGI_10024231; scaffold392 GLEAN promoter 694270 695269 1 - . ID=CGI_10024231; scaffold392 GLEAN mRNA 706529 707726 0.558407 - . ID=CGI_10024232; scaffold392 GLEAN promoter 707727 708726 0.558407 - . ID=CGI_10024232; scaffold392 TRF Tandem_Repeat 712822 712918 81 + . . scaffold392 GLEAN mRNA 716815 724970 0.651135 - . ID=CGI_10024233; scaffold392 TRF Tandem_Repeat 723506 723570 94 + . . scaffold392 GLEAN promoter 724971 725970 0.651135 - . ID=CGI_10024233; scaffold392 TRF Tandem_Repeat 730572 730613 59 + . . scaffold392 GLEAN promoter 739689 740688 0.71628 + . ID=CGI_10024234; scaffold392 GLEAN mRNA 740689 742698 0.71628 + . ID=CGI_10024234; scaffold392 GLEAN mRNA 743959 750965 1 - . ID=CGI_10024235; scaffold392 TRF Tandem_Repeat 745081 746081 1541 + . . scaffold392 GLEAN promoter 750966 751965 1 - . ID=CGI_10024235; scaffold392 WUBlastX LTR_Copia 753299 753694 29 + . . scaffold392 WUBlastX LINE_RTE-X 753359 753982 235 + . . scaffold392 WUBlastX LINE_RTE-X 754070 754447 240 + . . scaffold392 WUBlastX LINE_RTE-X 754438 754881 220 + . . scaffold392 WUBlastX LINE_L1 754914 755021 21 + . . scaffold392 WUBlastX LINE_RTE-X 754956 756629 923 + . . scaffold392 WUBlastX LINE_RTE-X 756628 757389 421 + . . scaffold392 WUBlastX LINE_RTE-X 756757 757512 124 + . . scaffold392 WUBlastX LINE_L2 760125 760997 393 - . . scaffold392 WUBlastX LINE_L2 760949 761731 547 - . . scaffold392 WUBlastX LINE_L2 760964 761893 314 - . . scaffold392 WUBlastX LINE_L2 761527 762231 138 - . . scaffold392 WUBlastX LINE_CR1-L2 761635 762096 140 - . . scaffold392 WUBlastX LINE_L2 762228 762986 228 - . . scaffold392 WUBlastX LINE_CR1-L2 763001 763486 184 - . . scaffold392 WUBlastX LINE_L2 763016 763639 136 - . . scaffold392 TRF Tandem_Repeat 767996 768104 137 + . . scaffold392 TRF Tandem_Repeat 767996 768104 137 + . . scaffold392 TRF Tandem_Repeat 767996 768104 137 + . . scaffold392 WUBlastX LINE_RTE-X 770719 770910 47 + . . scaffold392 WUBlastX LINE_Penelope 775017 775739 160 - . . scaffold392 GLEAN mRNA 784797 793663 0.791625 - . ID=CGI_10024236; scaffold392 TRF Tandem_Repeat 786602 786888 360 + . . scaffold392 WUBlastX LINE_CR1-L2 788990 789265 67 + . . scaffold392 WUBlastX LINE_CR1-L2 788996 789214 96 + . . scaffold392 WUBlastX LINE_CR1-L2 789259 789372 26 + . . scaffold392 TRF Tandem_Repeat 791044 791138 95 + . . scaffold392 TRF Tandem_Repeat 791220 791313 118 + . . scaffold392 GLEAN promoter 793664 794663 0.791625 - . ID=CGI_10024236; scaffold392 WUBlastX DNA_hAT-Tip100 795049 795378 96 - . . scaffold392 WUBlastX DNA_hAT-Tip100 795166 795399 173 - . . scaffold392 WUBlastX DNA_hAT-Tip100 795181 795627 68 - . . scaffold392 TRF Tandem_Repeat 811670 811710 82 + . . scaffold392 GLEAN mRNA 822923 826625 0.925161 - . ID=CGI_10024237; scaffold392 TRF Tandem_Repeat 823583 823613 62 + . . scaffold392 GLEAN promoter 826626 827625 0.925161 - . ID=CGI_10024237; scaffold392 WUBlastX LTR_Pao 844989 846725 1372 - . . scaffold392 TRF Tandem_Repeat 873776 874743 1479 + . . scaffold392 TRF Tandem_Repeat 880012 880066 110 + . . scaffold392 TRF Tandem_Repeat 880499 880709 180 + . . scaffold392 TRF Tandem_Repeat 881203 881427 188 + . . scaffold392 GLEAN promoter 894046 895045 1 + . ID=CGI_10024238; scaffold392 GLEAN mRNA 895046 896088 1 + . ID=CGI_10024238; scaffold392 WUBlastX DNA_Kolobok 895627 896070 30 + . . scaffold392 WUBlastX DNA_Kolobok 895732 896061 94 + . . scaffold392 GLEAN mRNA 896113 900283 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX DNA_Kolobok 896393 896731 87 - . . scaffold392 WUBlastX DNA_Kolobok 896988 897230 111 - . . scaffold392 WUBlastX DNA_Kolobok 897361 897576 44 - . . scaffold392 WUBlastX DNA_Kolobok 898023 898208 46 - . . scaffold392 WUBlastX DNA_Kolobok 898456 898650 35 - . . scaffold392 TRF Tandem_Repeat 898814 898862 98 + . . scaffold392 GLEAN promoter 900284 901283 0.782453 - . ID=CGI_10024239; scaffold392 WUBlastX LTR_Gypsy-Cigr 903628 904887 767 - . . scaffold392 WUBlastX LTR_Gypsy 904902 905255 98 - . . scaffold39202 TRF Tandem_Repeat 1175 1266 177 + . . scaffold39202 GLEAN mRNA 3616 9057 1 - . ID=CGI_10003211; scaffold39202 TRF Tandem_Repeat 3843 3894 104 + . . scaffold39202 TRF Tandem_Repeat 4954 5598 453 + . . scaffold39202 TRF Tandem_Repeat 4956 5598 318 + . . scaffold39202 TRF Tandem_Repeat 4963 5598 433 + . . scaffold39202 GLEAN promoter 9058 10057 1 - . ID=CGI_10003211; scaffold39202 GLEAN mRNA 11241 23031 0.996598 - . ID=CGI_10003212; scaffold39202 TRF Tandem_Repeat 12042 12150 155 + . . scaffold39202 TRF Tandem_Repeat 14901 14960 111 + . . scaffold39202 TRF Tandem_Repeat 16039 16311 366 + . . scaffold39202 TRF Tandem_Repeat 19320 21180 3202 + . . scaffold39202 TRF Tandem_Repeat 21200 21235 54 + . . scaffold39202 GLEAN promoter 23032 24031 0.996598 - . ID=CGI_10003212; scaffold39202 WUBlastX LTR_Gypsy 47129 47410 42 + . . scaffold39202 WUBlastX LTR_Gypsy 47174 47833 118 + . . scaffold39202 TRF Tandem_Repeat 50355 50466 129 + . . scaffold39202 TRF Tandem_Repeat 50392 50466 132 + . . scaffold39202 TRF Tandem_Repeat 51869 51906 60 + . . scaffold39202 GLEAN promoter 53517 54516 0.935312 + . ID=CGI_10003213; scaffold39202 TRF Tandem_Repeat 53690 53836 73 + . . scaffold39202 TRF Tandem_Repeat 53752 53900 97 + . . scaffold39202 GLEAN mRNA 54517 56047 0.935312 + . ID=CGI_10003213; scaffold39202 TRF Tandem_Repeat 54893 54937 65 + . . scaffold39202 WUBlastX LTR_Gypsy 65388 66077 116 + . . scaffold39212 WUBlastX DNA_TcMar-Tc1 4 639 230 - . . scaffold39212 TRF Tandem_Repeat 4417 4520 93 + . . scaffold39212 TRF Tandem_Repeat 9764 9829 107 + . . scaffold39212 TRF Tandem_Repeat 23042 23090 98 + . . scaffold39212 TRF Tandem_Repeat 23507 23543 65 + . . scaffold39212 TRF Tandem_Repeat 23649 23766 111 + . . scaffold39212 TRF Tandem_Repeat 23650 23766 128 + . . scaffold39212 GLEAN mRNA 30679 56961 0.415387 - . ID=CGI_10003233; scaffold39212 WUBlastX DNA_Sola 45469 45954 213 - . . scaffold39212 WUBlastX DNA_Sola 46061 46516 98 - . . scaffold39212 WUBlastX DNA_Sola 46459 47070 91 - . . scaffold39212 WUBlastX DNA_Sola 46480 47265 76 - . . scaffold39212 WUBlastX DNA_hAT-Tip100 53067 53282 69 - . . scaffold39212 WUBlastX DNA_hAT-Tip100 53094 53351 52 - . . scaffold39212 WUBlastX DNA_hAT-Tip100 53097 53489 35 - . . scaffold39212 WUBlastX DNA_hAT-Tip100 53419 53571 33 - . . scaffold39212 WUBlastX DNA_hAT-Tip100 54215 55078 53 - . . scaffold39212 WUBlastX DNA_hAT-Tip100 54581 55246 264 - . . scaffold39212 WUBlastX DNA_hAT-Tip100 56519 56752 37 - . . scaffold39212 GLEAN promoter 56962 57961 0.415387 - . ID=CGI_10003233; scaffold39212 TRF Tandem_Repeat 63961 64859 773 + . . scaffold39212 TRF Tandem_Repeat 64210 65036 704 + . . scaffold39214 GLEAN promoter 1312 2311 0.726315 + . ID=CGI_10003231; scaffold39214 GLEAN mRNA 2312 27816 0.726315 + . ID=CGI_10003231; scaffold39214 TRF Tandem_Repeat 9894 9960 89 + . . scaffold39214 TRF Tandem_Repeat 14291 14348 73 + . . scaffold39214 TRF Tandem_Repeat 15703 15757 85 + . . scaffold39214 TRF Tandem_Repeat 15704 15757 65 + . . scaffold39214 TRF Tandem_Repeat 25901 25963 126 + . . scaffold39214 GLEAN mRNA 28615 29733 0.503937 - . ID=CGI_10003232; scaffold39214 WUBlastX DNA_Academ 28747 30750 925 - . . scaffold39214 GLEAN promoter 29734 30733 0.503937 - . ID=CGI_10003232; scaffold39214 WUBlastX DNA_Academ 30738 31451 293 - . . scaffold39214 WUBlastX DNA_Academ 31044 31478 294 - . . scaffold39214 WUBlastX DNA_Academ 31526 32620 352 - . . scaffold39214 WUBlastX DNA_Academ 33602 33700 26 - . . scaffold39214 WUBlastX DNA_Academ 33720 33908 46 - . . scaffold39214 TRF Tandem_Repeat 39603 39628 52 + . . scaffold39214 TRF Tandem_Repeat 44785 44856 58 + . . scaffold39214 TRF Tandem_Repeat 44790 44856 71 + . . scaffold39214 TRF Tandem_Repeat 44804 44856 61 + . . scaffold39220 WUBlastX LTR_Gypsy 1789 2346 150 - . . scaffold39220 WUBlastX LTR_Gypsy 1915 2346 177 - . . scaffold39220 WUBlastX LTR_Gypsy 2062 2346 180 - . . scaffold39220 TRF Tandem_Repeat 39323 39411 83 + . . scaffold39220 WUBlastX LINE_RTE-X 49986 50048 55 - . . scaffold39220 WUBlastX LINE_RTE-X 49989 50060 20 - . . scaffold39220 WUBlastX LINE_RTE-X 50086 50211 33 - . . scaffold39220 WUBlastX LINE_RTE-X 50107 50229 59 - . . scaffold39220 WUBlastX LINE_RTE-X 50539 50727 61 - . . scaffold39220 GLEAN mRNA 53764 55280 0.976206 - . ID=CGI_10003229; scaffold39220 GLEAN promoter 55281 56280 0.976206 - . ID=CGI_10003229; scaffold39220 WUBlastX DNA_Maverick 63216 63821 70 - . . scaffold39220 WUBlastX DNA_Maverick 63486 63821 85 - . . scaffold39222 WUBlastX LINE_L1-Tx1 5 793 550 - . . scaffold39222 WUBlastX LINE_L2 1079 1825 80 - . . scaffold39222 WUBlastX LINE_L2 1106 1579 95 - . . scaffold39222 WUBlastX LINE_L1 1211 1978 20 - . . scaffold39222 TRF Tandem_Repeat 1677 1729 70 + . . scaffold39222 GLEAN mRNA 2193 10055 0.920211 - . ID=CGI_10003222; scaffold39222 TRF Tandem_Repeat 6462 6503 84 + . . scaffold39222 TRF Tandem_Repeat 6502 6673 164 + . . scaffold39222 TRF Tandem_Repeat 6503 6673 186 + . . scaffold39222 TRF Tandem_Repeat 8809 8858 100 + . . scaffold39222 GLEAN promoter 10056 11055 0.920211 - . ID=CGI_10003222; scaffold39222 GLEAN mRNA 11107 26406 0.92002 - . ID=CGI_10003223; scaffold39222 TRF Tandem_Repeat 14395 14434 53 + . . scaffold39222 GLEAN promoter 25225 26224 1 + . ID=CGI_10003224; scaffold39222 GLEAN mRNA 26225 40286 1 + . ID=CGI_10003224; scaffold39222 GLEAN promoter 26407 27406 0.92002 - . ID=CGI_10003223; scaffold39222 TRF Tandem_Repeat 28176 28235 111 + . . scaffold39222 TRF Tandem_Repeat 33628 33702 150 + . . scaffold39222 GLEAN mRNA 43444 55439 0.911807 - . ID=CGI_10003225; scaffold39222 TRF Tandem_Repeat 55020 55052 59 + . . scaffold39222 GLEAN promoter 55440 56439 0.911807 - . ID=CGI_10003225; scaffold39222 GLEAN mRNA 64121 65158 1 - . ID=CGI_10003226; scaffold39222 GLEAN promoter 65159 66158 1 - . ID=CGI_10003226; scaffold39222 TRF Tandem_Repeat 65214 65277 74 + . . scaffold39222 GLEAN mRNA 65510 66386 0.999999 - . ID=CGI_10003227; scaffold39222 GLEAN promoter 66387 67386 0.999999 - . ID=CGI_10003227; scaffold39240 GLEAN mRNA 4004 8537 1 - . ID=CGI_10003243; scaffold39240 GLEAN promoter 8538 9537 1 - . ID=CGI_10003243; scaffold39240 GLEAN promoter 10156 11155 1 + . ID=CGI_10003244; scaffold39240 GLEAN mRNA 11156 15747 1 + . ID=CGI_10003244; scaffold39240 TRF Tandem_Repeat 14252 14276 50 + . . scaffold39240 GLEAN mRNA 16296 18399 1 - . ID=CGI_10003245; scaffold39240 GLEAN promoter 17646 18645 0.999676 + . ID=CGI_10003246; scaffold39240 GLEAN promoter 18400 19399 1 - . ID=CGI_10003245; scaffold39240 GLEAN mRNA 18646 25516 0.999676 + . ID=CGI_10003246; scaffold39240 TRF Tandem_Repeat 20951 20998 96 + . . scaffold39240 TRF Tandem_Repeat 22383 22434 104 + . . scaffold39240 TRF Tandem_Repeat 22494 22518 50 + . . scaffold39240 TRF Tandem_Repeat 33153 33990 1083 + . . scaffold39240 TRF Tandem_Repeat 33997 34040 70 + . . scaffold39240 TRF Tandem_Repeat 34001 34039 60 + . . scaffold39240 GLEAN mRNA 34664 37858 0.999618 - . ID=CGI_10003247; scaffold39240 WUBlastX DNA_MuDR 36714 37457 247 + . . scaffold39240 WUBlastX DNA_MuDR 37254 37517 40 + . . scaffold39240 GLEAN promoter 37859 38858 0.999618 - . ID=CGI_10003247; scaffold39240 WUBlastX LTR_Gypsy-Cigr 46563 47465 49 + . . scaffold39240 WUBlastX LTR_Gypsy 46593 47198 140 + . . scaffold39240 WUBlastX LTR_Gypsy 46722 47288 52 + . . scaffold39240 WUBlastX LTR_Gypsy 47615 47665 22 + . . scaffold39240 WUBlastX LTR_Gypsy 47660 48019 73 + . . scaffold39240 WUBlastX LTR_Gypsy 47738 48268 89 + . . scaffold39240 WUBlastX LTR_Gypsy 48443 48703 66 + . . scaffold39240 WUBlastX LTR_Gypsy 48518 48697 100 + . . scaffold39240 WUBlastX LTR_Gypsy-Cigr 48690 50006 730 + . . scaffold39240 WUBlastX LTR_Gypsy 48690 49790 868 + . . scaffold39240 WUBlastX LTR_Gypsy 50026 51174 638 + . . scaffold39240 WUBlastX LTR_Gypsy 50128 51360 94 + . . scaffold39240 WUBlastX LTR_Pao 51457 51600 20 + . . scaffold39240 GLEAN mRNA 51707 51982 0.99993 - . ID=CGI_10003248; scaffold39240 GLEAN promoter 51983 52982 0.99993 - . ID=CGI_10003248; scaffold39240 TRF Tandem_Repeat 59475 60573 591 + . . scaffold39240 TRF Tandem_Repeat 59826 60528 1068 + . . scaffold39240 WUBlastX DNA_Harbinger 61600 61734 40 + . . scaffold39240 WUBlastX DNA_Harbinger 61712 61870 47 + . . scaffold39244 GLEAN mRNA 7977 16677 0.999957 - . ID=CGI_10003239; scaffold39244 GLEAN promoter 16678 17677 0.999957 - . ID=CGI_10003239; scaffold39244 GLEAN mRNA 18880 25267 0.999676 - . ID=CGI_10003240; scaffold39244 GLEAN promoter 25268 26267 0.999676 - . ID=CGI_10003240; scaffold39244 GLEAN mRNA 28671 34553 0.994203 - . ID=CGI_10003241; scaffold39244 GLEAN promoter 34554 35553 0.994203 - . ID=CGI_10003241; scaffold39244 GLEAN mRNA 38898 47144 1 - . ID=CGI_10003242; scaffold39244 GLEAN promoter 47145 48144 1 - . ID=CGI_10003242; scaffold39258 TRF Tandem_Repeat 957 1322 448 + . . scaffold39258 TRF Tandem_Repeat 12914 12957 88 + . . scaffold39258 TRF Tandem_Repeat 15972 16034 117 + . . scaffold39258 GLEAN promoter 16381 17380 1 + . ID=CGI_10003262; scaffold39258 TRF Tandem_Repeat 17221 17403 170 + . . scaffold39258 GLEAN mRNA 17381 18727 1 + . ID=CGI_10003262; scaffold39258 GLEAN mRNA 21383 23695 0.999661 - . ID=CGI_10003263; scaffold39258 WUBlastX DNA_hAT-Tip100 22748 22903 90 - . . scaffold39258 WUBlastX DNA_hAT-Tip100 22763 23032 47 - . . scaffold39258 WUBlastX DNA_hAT-Tip100 23489 23620 35 - . . scaffold39258 GLEAN promoter 23696 24695 0.999661 - . ID=CGI_10003263; scaffold39258 TRF Tandem_Repeat 24668 24699 64 + . . scaffold39258 GLEAN mRNA 28234 36100 0.999689 - . ID=CGI_10003264; scaffold39258 GLEAN promoter 36101 37100 0.999689 - . ID=CGI_10003264; scaffold39258 TRF Tandem_Repeat 36662 36720 82 + . . scaffold39258 GLEAN promoter 39867 40866 1 + . ID=CGI_10003265; scaffold39258 GLEAN mRNA 40867 46067 1 + . ID=CGI_10003265; scaffold39258 TRF Tandem_Repeat 42662 42692 62 + . . scaffold39258 GLEAN promoter 45106 46105 0.961071 + . ID=CGI_10003266; scaffold39258 TRF Tandem_Repeat 45870 45935 132 + . . scaffold39258 GLEAN mRNA 46106 52290 0.961071 + . ID=CGI_10003266; scaffold39258 TRF Tandem_Repeat 51234 51289 85 + . . scaffold39258 GLEAN mRNA 54381 66910 0.87948 - . ID=CGI_10003267; scaffold39258 TRF Tandem_Repeat 60194 60231 67 + . . scaffold39258 GLEAN promoter 66911 67910 0.87948 - . ID=CGI_10003267; scaffold39262 GLEAN promoter 746 1745 0.993595 + . ID=CGI_10003259; scaffold39262 GLEAN mRNA 1746 3998 0.993595 + . ID=CGI_10003259; scaffold39262 GLEAN mRNA 12098 17385 0.439598 - . ID=CGI_10003260; scaffold39262 GLEAN promoter 17386 18385 0.439598 - . ID=CGI_10003260; scaffold39262 GLEAN mRNA 66993 67921 0.671264 - . ID=CGI_10003261; scaffold39262 GLEAN promoter 67922 68072 0.671264 - . ID=CGI_10003261; scaffold39268 TRF Tandem_Repeat 3315 3357 61 + . . scaffold39268 GLEAN mRNA 16420 27530 0.768779 - . ID=CGI_10003274; scaffold39268 WUBlastX LINE_L2 17699 18346 132 + . . scaffold39268 WUBlastX LINE_L2 17873 18445 101 + . . scaffold39268 WUBlastX LINE_L2 18870 19376 37 + . . scaffold39268 WUBlastX LINE_L2 18960 19391 220 + . . scaffold39268 WUBlastX LINE_L2 19029 19508 228 + . . scaffold39268 WUBlastX LINE_L2 19319 20764 494 + . . scaffold39268 TRF Tandem_Repeat 25873 25923 93 + . . scaffold39268 TRF Tandem_Repeat 25964 25998 70 + . . scaffold39268 GLEAN promoter 27531 28530 0.768779 - . ID=CGI_10003274; scaffold39268 WUBlastX LTR_DIRS 32625 32924 99 + . . scaffold39268 WUBlastX LTR_DIRS 33642 34208 92 + . . scaffold39268 WUBlastX LTR_DIRS 33759 34238 182 + . . scaffold39268 WUBlastX LTR_DIRS 35262 35543 22 + . . scaffold39268 WUBlastX LTR_DIRS 35355 35525 27 + . . scaffold39268 WUBlastX LTR_DIRS 35539 36042 243 + . . scaffold39268 TRF Tandem_Repeat 36279 36733 393 + . . scaffold39268 TRF Tandem_Repeat 36279 36733 497 + . . scaffold39268 GLEAN mRNA 37983 58849 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX DNA_Harbinger 40167 40610 176 + . . scaffold39268 WUBlastX DNA_Harbinger 40633 40989 204 + . . scaffold39268 WUBlastX DNA_Harbinger 40729 40989 232 + . . scaffold39268 WUBlastX DNA_Harbinger 43735 43914 63 - . . scaffold39268 WUBlastX DNA_Harbinger 45842 46000 71 - . . scaffold39268 TRF Tandem_Repeat 46303 47120 867 + . . scaffold39268 TRF Tandem_Repeat 47158 47254 126 + . . scaffold39268 TRF Tandem_Repeat 47609 47812 243 + . . scaffold39268 WUBlastX DNA_En-Spm 49476 50585 441 - . . scaffold39268 WUBlastX DNA_En-Spm 50564 51769 819 - . . scaffold39268 WUBlastX DNA_En-Spm 51125 52084 24 - . . scaffold39268 WUBlastX LINE_RTE-X 56667 57146 116 + . . scaffold39268 WUBlastX LINE_RTE-X 56706 57005 175 + . . scaffold39268 WUBlastX LINE_RTE-X 56706 57089 120 + . . scaffold39268 TRF Tandem_Repeat 57305 57334 60 + . . scaffold39268 GLEAN promoter 58850 59849 0.736622 - . ID=CGI_10003275; scaffold39268 WUBlastX LINE_L1-Tx1 59312 60874 137 - . . scaffold39268 WUBlastX LINE_L1-Tx1 59567 60874 209 - . . scaffold39268 WUBlastX LINE_L1-Tx1 60428 60955 105 - . . scaffold39268 GLEAN promoter 60831 61830 0.898511 + . ID=CGI_10003276; scaffold39268 GLEAN mRNA 61831 68309 0.898511 + . ID=CGI_10003276; scaffold39268 WUBlastX DNA_MuDR 63398 63640 86 + . . scaffold39268 WUBlastX DNA_MuDR 63437 63634 97 + . . scaffold39268 WUBlastX DNA_MuDR 63731 63985 64 + . . scaffold39268 WUBlastX DNA_MuDR 63809 63976 80 + . . scaffold39268 WUBlastX DNA_MuDR 63857 64090 34 + . . scaffold39268 WUBlastX DNA_MuDR 64111 64428 69 + . . scaffold39268 WUBlastX DNA_MuDR 64120 64374 82 + . . scaffold39268 TRF Tandem_Repeat 67021 67054 59 + . . scaffold39272 GLEAN promoter 34625 35624 1 + . ID=CGI_10003282; scaffold39272 GLEAN mRNA 35625 37617 1 + . ID=CGI_10003282; scaffold39272 GLEAN promoter 44656 45655 0.982662 + . ID=CGI_10003283; scaffold39272 GLEAN mRNA 45656 49765 0.982662 + . ID=CGI_10003283; scaffold39272 GLEAN promoter 49900 50899 0.997858 + . ID=CGI_10003284; scaffold39272 GLEAN mRNA 50900 67936 0.997858 + . ID=CGI_10003284; scaffold39274 TRF Tandem_Repeat 12905 12941 74 + . . scaffold39274 TRF Tandem_Repeat 13456 13545 81 + . . scaffold39274 WUBlastX LINE_RTE-BovB 19475 19651 124 + . . scaffold39274 TRF Tandem_Repeat 20649 20683 54 + . . scaffold39274 WUBlastX LINE_Penelope 21053 21307 57 - . . scaffold39274 WUBlastX LINE_Penelope 21298 21750 36 - . . scaffold39274 WUBlastX LINE_Penelope 21607 21813 74 - . . scaffold39274 WUBlastX LINE_Penelope 21785 21907 27 - . . scaffold39274 WUBlastX LINE_Penelope 22633 22962 78 - . . scaffold39274 WUBlastX LINE_CR1 28245 28859 223 - . . scaffold39274 WUBlastX LINE_CR1 28245 28739 348 - . . scaffold39274 WUBlastX LINE_CR1 28885 29349 184 - . . scaffold39274 WUBlastX LINE_CR1 29331 29444 44 - . . scaffold39274 WUBlastX LINE_CR1 29431 29685 109 - . . scaffold39274 WUBlastX LINE_CR1 29443 29742 96 - . . scaffold39274 WUBlastX LINE_CR1 29443 29613 140 - . . scaffold39274 TRF Tandem_Repeat 31896 32012 67 + . . scaffold39274 TRF Tandem_Repeat 36276 36338 126 + . . scaffold39274 GLEAN mRNA 36622 42865 0.999976 - . ID=CGI_10003277; scaffold39274 GLEAN promoter 42866 43865 0.999976 - . ID=CGI_10003277; scaffold39274 TRF Tandem_Repeat 49071 49186 76 + . . scaffold39274 TRF Tandem_Repeat 50276 50328 52 + . . scaffold39274 TRF Tandem_Repeat 53106 54112 645 + . . scaffold39274 GLEAN mRNA 58852 59907 0.61747 - . ID=CGI_10003278; scaffold39274 GLEAN promoter 59908 60907 0.61747 - . ID=CGI_10003278; scaffold39274 GLEAN mRNA 64144 66868 0.99999 - . ID=CGI_10003279; scaffold39274 TRF Tandem_Repeat 66346 66397 97 + . . scaffold39274 TRF Tandem_Repeat 66525 66568 79 + . . scaffold39274 GLEAN promoter 66869 67868 0.99999 - . ID=CGI_10003279; scaffold39292 GLEAN mRNA 3195 25371 0.990205 - . ID=CGI_10003314; scaffold39292 GLEAN promoter 25372 26371 0.990205 - . ID=CGI_10003314; scaffold39292 GLEAN mRNA 27230 34425 0.638068 - . ID=CGI_10003315; scaffold39292 GLEAN promoter 34426 35425 0.638068 - . ID=CGI_10003315; scaffold393 GLEAN mRNA 2708 3949 1 - . ID=CGI_10026865; scaffold393 GLEAN promoter 3950 4949 1 - . ID=CGI_10026865; scaffold393 TRF Tandem_Repeat 5823 5882 120 + . . scaffold393 TRF Tandem_Repeat 6008 6078 117 + . . scaffold393 GLEAN mRNA 9347 9889 0.531613 - . ID=CGI_10026866; scaffold393 GLEAN promoter 9890 10889 0.531613 - . ID=CGI_10026866; scaffold393 WUBlastX LINE_RTE-BovB 11268 11486 82 + . . scaffold393 GLEAN promoter 17230 18229 1 + . ID=CGI_10026867; scaffold393 GLEAN mRNA 18230 25656 1 + . ID=CGI_10026867; scaffold393 TRF Tandem_Repeat 23370 23485 223 + . . scaffold393 GLEAN promoter 26160 27159 0.81093 + . ID=CGI_10026868; scaffold393 GLEAN mRNA 27160 36846 0.81093 + . ID=CGI_10026868; scaffold393 TRF Tandem_Repeat 40209 40251 86 + . . scaffold393 TRF Tandem_Repeat 47060 47140 162 + . . scaffold393 TRF Tandem_Repeat 47613 47769 167 + . . scaffold393 TRF Tandem_Repeat 48704 48973 240 + . . scaffold393 TRF Tandem_Repeat 51699 51753 101 + . . scaffold393 TRF Tandem_Repeat 51835 51894 120 + . . scaffold393 TRF Tandem_Repeat 52223 52250 56 + . . scaffold393 GLEAN mRNA 54601 55038 0.999984 - . ID=CGI_10026869; scaffold393 GLEAN promoter 55039 56038 0.999984 - . ID=CGI_10026869; scaffold393 WUBlastX LTR_Gypsy 57552 58208 95 + . . scaffold393 WUBlastX LTR_Gypsy 57846 58544 125 + . . scaffold393 WUBlastX LTR_Gypsy 58401 58622 26 + . . scaffold393 WUBlastX LTR_Gypsy 58715 60040 615 + . . scaffold393 WUBlastX LTR_Gypsy 59953 61374 836 + . . scaffold393 WUBlastX LTR_Gypsy 60979 61554 46 + . . scaffold393 WUBlastX LTR_Gypsy 61060 61464 65 + . . scaffold393 WUBlastX LTR_Gypsy 62511 63899 1140 - . . scaffold393 WUBlastX LTR_Gypsy 63740 65761 1636 - . . scaffold393 WUBlastX LTR_Gypsy 65540 66088 227 - . . scaffold393 WUBlastX LTR_Gypsy 66078 66260 68 - . . scaffold393 WUBlastX LTR_Gypsy 66078 66221 81 - . . scaffold393 WUBlastX LTR_Gypsy 66371 66451 27 - . . scaffold393 WUBlastX LTR_Gypsy 66421 66636 35 - . . scaffold393 WUBlastX LTR_Gypsy 66532 66771 40 - . . scaffold393 WUBlastX LINE_L2 70219 70323 64 - . . scaffold393 WUBlastX LINE_L2 70240 70323 71 - . . scaffold393 WUBlastX LINE_L2 70316 71470 319 - . . scaffold393 WUBlastX LINE_L2 71457 71657 32 - . . scaffold393 WUBlastX LINE_L2 71478 71618 41 - . . scaffold393 WUBlastX LINE_CR1 71626 71670 23 - . . scaffold393 TRF Tandem_Repeat 74809 75406 552 + . . scaffold393 TRF Tandem_Repeat 76391 76460 133 + . . scaffold393 TRF Tandem_Repeat 76557 76604 96 + . . scaffold393 WUBlastX LINE_RTE-X 78562 80217 632 - . . scaffold393 WUBlastX LINE_RTE-X 80189 80530 281 - . . scaffold393 TRF Tandem_Repeat 84391 84542 108 + . . scaffold393 WUBlastX LINE_RTE-X 93222 93398 54 + . . scaffold393 GLEAN mRNA 104748 107766 0.973624 - . ID=CGI_10026870; scaffold393 GLEAN promoter 107767 108766 0.973624 - . ID=CGI_10026870; scaffold393 TRF Tandem_Repeat 108397 108450 108 + . . scaffold393 TRF Tandem_Repeat 108735 108778 88 + . . scaffold393 TRF Tandem_Repeat 108917 108991 141 + . . scaffold393 TRF Tandem_Repeat 109376 109439 92 + . . scaffold393 TRF Tandem_Repeat 109896 110125 397 + . . scaffold393 TRF Tandem_Repeat 109997 110095 52 + . . scaffold393 TRF Tandem_Repeat 114879 114912 68 + . . scaffold393 TRF Tandem_Repeat 114983 115050 120 + . . scaffold393 TRF Tandem_Repeat 134656 135761 1444 + . . scaffold393 TRF Tandem_Repeat 136316 136380 121 + . . scaffold393 TRF Tandem_Repeat 137039 137125 129 + . . scaffold393 TRF Tandem_Repeat 138998 139049 104 + . . scaffold393 TRF Tandem_Repeat 142581 142644 119 + . . scaffold393 TRF Tandem_Repeat 143684 143767 159 + . . scaffold393 TRF Tandem_Repeat 144737 144780 72 + . . scaffold393 TRF Tandem_Repeat 144778 144835 71 + . . scaffold393 TRF Tandem_Repeat 146270 146311 84 + . . scaffold393 TRF Tandem_Repeat 146386 146621 400 + . . scaffold393 TRF Tandem_Repeat 147754 147815 97 + . . scaffold393 TRF Tandem_Repeat 147815 148221 661 + . . scaffold393 TRF Tandem_Repeat 148525 148574 100 + . . scaffold393 TRF Tandem_Repeat 153603 153757 120 + . . scaffold393 TRF Tandem_Repeat 162903 163117 225 + . . scaffold393 WUBlastX LTR_Gypsy 164122 168057 2973 + . . scaffold393 WUBlastX LINE_I-Nimb 177085 177132 20 + . . scaffold393 WUBlastX LINE_RTE-X 177141 177563 228 + . . scaffold393 WUBlastX LINE_RTE-BovB 177195 177659 97 + . . scaffold393 WUBlastX LINE_RTE-X 177678 177938 61 + . . scaffold393 WUBlastX LINE_RTE-X 177681 178052 44 + . . scaffold393 WUBlastX LINE_RTE-X 177687 177905 85 + . . scaffold393 WUBlastX LINE_L2 177941 178078 22 + . . scaffold393 WUBlastX LINE_RTE-X 178174 178545 104 + . . scaffold393 WUBlastX LINE_L1 190131 190562 30 - . . scaffold393 WUBlastX LINE_L1 190131 190691 25 - . . scaffold393 GLEAN mRNA 192081 196746 0.978864 - . ID=CGI_10026871; scaffold393 GLEAN promoter 196747 197746 0.978864 - . ID=CGI_10026871; scaffold393 TRF Tandem_Repeat 198903 198951 98 + . . scaffold393 TRF Tandem_Repeat 212345 212371 54 + . . scaffold393 TRF Tandem_Repeat 212370 212418 53 + . . scaffold393 TRF Tandem_Repeat 222129 222174 92 + . . scaffold393 TRF Tandem_Repeat 225206 225235 51 + . . scaffold393 TRF Tandem_Repeat 227658 227757 121 + . . scaffold393 GLEAN mRNA 228240 228479 0.733495 - . ID=CGI_10026872; scaffold393 GLEAN promoter 228480 229479 0.733495 - . ID=CGI_10026872; scaffold393 GLEAN mRNA 248297 248665 0.999642 - . ID=CGI_10026873; scaffold393 GLEAN promoter 248666 249665 0.999642 - . ID=CGI_10026873; scaffold393 TRF Tandem_Repeat 262421 263193 1138 + . . scaffold393 TRF Tandem_Repeat 265682 265713 64 + . . scaffold393 GLEAN promoter 266053 267052 0.999676 + . ID=CGI_10026874; scaffold393 GLEAN mRNA 267053 275122 0.999676 + . ID=CGI_10026874; scaffold393 TRF Tandem_Repeat 270893 271974 1522 + . . scaffold393 GLEAN mRNA 277379 285745 1 - . ID=CGI_10026875; scaffold393 GLEAN promoter 285746 286745 1 - . ID=CGI_10026875; scaffold393 TRF Tandem_Repeat 286867 286922 112 + . . scaffold393 TRF Tandem_Repeat 301176 301371 114 + . . scaffold393 TRF Tandem_Repeat 301407 301564 84 + . . scaffold393 GLEAN promoter 301942 302941 0.99935 + . ID=CGI_10026876; scaffold393 GLEAN mRNA 302942 313439 0.99935 + . ID=CGI_10026876; scaffold393 TRF Tandem_Repeat 304297 304393 185 + . . scaffold393 TRF Tandem_Repeat 313526 313571 56 + . . scaffold393 TRF Tandem_Repeat 320626 320676 50 + . . scaffold393 WUBlastX LINE_RTE-X 324423 324674 36 - . . scaffold393 GLEAN promoter 333286 334285 0.654302 + . ID=CGI_10026877; scaffold393 GLEAN mRNA 334286 335986 0.654302 + . ID=CGI_10026877; scaffold393 TRF Tandem_Repeat 338269 338310 84 + . . scaffold393 GLEAN promoter 341720 342719 0.226746 + . ID=CGI_10026878; scaffold393 GLEAN mRNA 342720 345340 0.226746 + . ID=CGI_10026878; scaffold393 GLEAN promoter 345842 346841 0.976322 + . ID=CGI_10026879; scaffold393 GLEAN mRNA 346842 359147 0.976322 + . ID=CGI_10026879; scaffold393 WUBlastX DNA_TcMar-Tc1 349284 349622 53 + . . scaffold393 WUBlastX DNA_TcMar-Tc1 349329 349607 72 + . . scaffold393 WUBlastX DNA_TcMar-Tc1 349395 349613 83 + . . scaffold393 WUBlastX DNA_TcMar-Tc1 351162 351500 53 + . . scaffold393 WUBlastX DNA_TcMar-Tc1 351207 351485 72 + . . scaffold393 WUBlastX DNA_TcMar-Tc1 351273 351491 83 + . . scaffold393 TRF Tandem_Repeat 357018 357202 244 + . . scaffold393 TRF Tandem_Repeat 357018 357581 365 + . . scaffold393 TRF Tandem_Repeat 357285 357581 265 + . . scaffold393 GLEAN mRNA 367927 369229 0.99853 - . ID=CGI_10026880; scaffold393 GLEAN promoter 369230 370229 0.99853 - . ID=CGI_10026880; scaffold393 GLEAN mRNA 374879 375759 0.99811 - . ID=CGI_10026881; scaffold393 GLEAN promoter 375760 376759 0.99811 - . ID=CGI_10026881; scaffold393 GLEAN promoter 375786 376785 0.776813 + . ID=CGI_10026882; scaffold393 GLEAN mRNA 376786 378126 0.776813 + . ID=CGI_10026882; scaffold393 GLEAN promoter 384906 385905 0.559885 + . ID=CGI_10026883; scaffold393 GLEAN mRNA 385906 386894 0.559885 + . ID=CGI_10026883; scaffold393 GLEAN promoter 389521 390520 1 + . ID=CGI_10026884; scaffold393 GLEAN mRNA 390521 391672 1 + . ID=CGI_10026884; scaffold393 GLEAN promoter 391138 392137 1 + . ID=CGI_10026885; scaffold393 GLEAN mRNA 392138 392623 1 + . ID=CGI_10026885; scaffold393 GLEAN promoter 395944 396943 0.99782 + . ID=CGI_10026886; scaffold393 GLEAN mRNA 396944 399375 0.99782 + . ID=CGI_10026886; scaffold393 GLEAN promoter 405567 406566 1 + . ID=CGI_10026887; scaffold393 GLEAN mRNA 406567 412294 1 + . ID=CGI_10026887; scaffold393 GLEAN mRNA 413661 420622 0.996819 - . ID=CGI_10026888; scaffold393 TRF Tandem_Repeat 417216 417674 638 + . . scaffold393 GLEAN promoter 420206 421205 0.970688 + . ID=CGI_10026889; scaffold393 GLEAN promoter 420623 421622 0.996819 - . ID=CGI_10026888; scaffold393 GLEAN mRNA 421206 426654 0.970688 + . ID=CGI_10026889; scaffold393 TRF Tandem_Repeat 421428 422334 1331 + . . scaffold393 GLEAN mRNA 429161 432711 0.93723 - . ID=CGI_10026890; scaffold393 GLEAN promoter 432712 433711 0.93723 - . ID=CGI_10026890; scaffold393 GLEAN promoter 432823 433822 0.911803 + . ID=CGI_10026891; scaffold393 TRF Tandem_Repeat 433620 433663 88 + . . scaffold393 GLEAN mRNA 433823 438833 0.911803 + . ID=CGI_10026891; scaffold393 GLEAN mRNA 440150 455129 0.997307 - . ID=CGI_10026892; scaffold393 TRF Tandem_Repeat 441515 441985 754 + . . scaffold393 TRF Tandem_Repeat 441515 441985 749 + . . scaffold393 TRF Tandem_Repeat 441515 441985 795 + . . scaffold393 TRF Tandem_Repeat 441579 441982 110 + . . scaffold393 TRF Tandem_Repeat 442523 442644 139 + . . scaffold393 TRF Tandem_Repeat 442523 442647 159 + . . scaffold393 TRF Tandem_Repeat 445308 445377 122 + . . scaffold393 TRF Tandem_Repeat 445401 446360 1363 + . . scaffold393 TRF Tandem_Repeat 449430 449532 143 + . . scaffold393 TRF Tandem_Repeat 449593 449822 270 + . . scaffold393 TRF Tandem_Repeat 449593 449822 325 + . . scaffold393 TRF Tandem_Repeat 452339 452527 369 + . . scaffold393 GLEAN promoter 454696 455695 0.99873 + . ID=CGI_10026893; scaffold393 GLEAN promoter 455130 456129 0.997307 - . ID=CGI_10026892; scaffold393 GLEAN mRNA 455696 471874 0.99873 + . ID=CGI_10026893; scaffold393 TRF Tandem_Repeat 462810 462870 104 + . . scaffold393 TRF Tandem_Repeat 467774 467961 103 + . . scaffold393 GLEAN promoter 471160 472159 1 + . ID=CGI_10026894; scaffold393 GLEAN mRNA 472160 476479 1 + . ID=CGI_10026894; scaffold393 TRF Tandem_Repeat 474516 475569 1268 + . . scaffold393 TRF Tandem_Repeat 474516 475569 1297 + . . scaffold393 TRF Tandem_Repeat 478205 478389 334 + . . scaffold393 GLEAN mRNA 480943 496631 1 - . ID=CGI_10026895; scaffold393 TRF Tandem_Repeat 494281 494327 69 + . . scaffold393 GLEAN promoter 496632 497631 1 - . ID=CGI_10026895; scaffold393 TRF Tandem_Repeat 497092 497137 51 + . . scaffold393 GLEAN promoter 501930 502929 0.680323 + . ID=CGI_10026896; scaffold393 GLEAN mRNA 502930 517903 0.680323 + . ID=CGI_10026896; scaffold393 TRF Tandem_Repeat 504472 504655 89 + . . scaffold393 GLEAN promoter 519434 520433 0.536346 + . ID=CGI_10026897; scaffold393 GLEAN mRNA 520434 528421 0.536346 + . ID=CGI_10026897; scaffold393 TRF Tandem_Repeat 529165 530861 2526 + . . scaffold393 GLEAN mRNA 531978 532396 1 - . ID=CGI_10026898; scaffold393 GLEAN promoter 532397 533396 1 - . ID=CGI_10026898; scaffold393 GLEAN mRNA 532545 533114 1 - . ID=CGI_10026899; scaffold393 GLEAN promoter 533115 534114 1 - . ID=CGI_10026899; scaffold393 GLEAN promoter 533622 534621 1 + . ID=CGI_10026900; scaffold393 GLEAN mRNA 534622 536646 1 + . ID=CGI_10026900; scaffold393 GLEAN promoter 544345 545344 0.995819 + . ID=CGI_10026901; scaffold393 GLEAN mRNA 545345 564145 0.995819 + . ID=CGI_10026901; scaffold393 TRF Tandem_Repeat 548752 548792 73 + . . scaffold393 TRF Tandem_Repeat 555116 555639 785 + . . scaffold393 TRF Tandem_Repeat 556932 556989 107 + . . scaffold393 TRF Tandem_Repeat 558901 558961 79 + . . scaffold393 TRF Tandem_Repeat 562737 562977 376 + . . scaffold393 GLEAN mRNA 564497 571587 0.777352 - . ID=CGI_10026902; scaffold393 GLEAN promoter 571588 572587 0.777352 - . ID=CGI_10026902; scaffold393 GLEAN mRNA 573686 576980 1 - . ID=CGI_10026903; scaffold393 TRF Tandem_Repeat 576642 576697 112 + . . scaffold393 GLEAN promoter 576981 577980 1 - . ID=CGI_10026903; scaffold393 TRF Tandem_Repeat 578673 578857 298 + . . scaffold393 GLEAN promoter 579152 580151 0.999683 + . ID=CGI_10026904; scaffold393 GLEAN mRNA 580152 580517 0.999683 + . ID=CGI_10026904; scaffold393 WUBlastX LINE_RTE-X 584237 584365 33 - . . scaffold393 WUBlastX LINE_RTE-X 584361 584501 40 - . . scaffold393 TRF Tandem_Repeat 585160 585192 66 + . . scaffold393 GLEAN promoter 585387 586386 1 + . ID=CGI_10026905; scaffold393 GLEAN mRNA 586387 587162 1 + . ID=CGI_10026905; scaffold393 GLEAN promoter 593167 594166 1 + . ID=CGI_10026906; scaffold393 GLEAN mRNA 594167 605434 1 + . ID=CGI_10026906; scaffold393 GLEAN promoter 607744 608743 1 + . ID=CGI_10026907; scaffold393 GLEAN mRNA 608744 609510 1 + . ID=CGI_10026907; scaffold393 TRF Tandem_Repeat 610437 610522 140 + . . scaffold393 GLEAN promoter 614091 615090 0.719328 + . ID=CGI_10026908; scaffold393 GLEAN mRNA 615091 627246 0.719328 + . ID=CGI_10026908; scaffold393 TRF Tandem_Repeat 618191 618217 54 + . . scaffold393 TRF Tandem_Repeat 630926 631010 143 + . . scaffold393 WUBlastX LTR_Pao 639251 640528 370 + . . scaffold393 WUBlastX LTR_Pao 639680 644518 2677 + . . scaffold393 TRF Tandem_Repeat 645374 645410 65 + . . scaffold393 TRF Tandem_Repeat 646231 646470 335 + . . scaffold393 GLEAN mRNA 651522 655664 1 - . ID=CGI_10026909; scaffold393 GLEAN promoter 655665 656664 1 - . ID=CGI_10026909; scaffold393 TRF Tandem_Repeat 658973 659077 156 + . . scaffold393 TRF Tandem_Repeat 674811 674917 142 + . . scaffold393 GLEAN promoter 675992 676991 0.987325 + . ID=CGI_10026910; scaffold393 GLEAN mRNA 676992 690173 0.987325 + . ID=CGI_10026910; scaffold393 TRF Tandem_Repeat 684353 684402 55 + . . scaffold393 TRF Tandem_Repeat 685905 686182 439 + . . scaffold393 TRF Tandem_Repeat 694454 694542 72 + . . scaffold393 WUBlastX LTR_Gypsy 694678 698667 1129 + . . scaffold393 WUBlastX LTR_Gypsy 695299 698646 2618 + . . scaffold393 GLEAN promoter 699989 700988 0.68143 + . ID=CGI_10026911; scaffold393 GLEAN mRNA 700989 727086 0.68143 + . ID=CGI_10026911; scaffold393 WUBlastX LINE_RTE-X 721711 721944 50 - . . scaffold393 WUBlastX LINE_RTE-X 721753 722076 27 - . . scaffold393 TRF Tandem_Repeat 729075 729119 90 + . . scaffold393 WUBlastX DNA_MuDR 755123 755827 165 - . . scaffold393 WUBlastX DNA_MuDR 755288 755839 239 - . . scaffold393 WUBlastX DNA_TcMar-Tc1 760220 760618 68 - . . scaffold393 WUBlastX DNA_TcMar-Tc1 760226 760540 70 - . . scaffold393 GLEAN promoter 764786 765785 0.523996 + . ID=CGI_10026912; scaffold393 GLEAN mRNA 765786 767199 0.523996 + . ID=CGI_10026912; scaffold393 WUBlastX LTR_Ngaro 777520 778104 35 + . . scaffold393 TRF Tandem_Repeat 778954 778996 77 + . . scaffold393 TRF Tandem_Repeat 801303 802142 1083 + . . scaffold393 GLEAN mRNA 804050 815165 1 - . ID=CGI_10026913; scaffold393 GLEAN promoter 815166 816165 1 - . ID=CGI_10026913; scaffold393 TRF Tandem_Repeat 820170 820214 90 + . . scaffold393 GLEAN promoter 839121 840120 0.990829 + . ID=CGI_10026914; scaffold393 GLEAN mRNA 840121 840399 0.990829 + . ID=CGI_10026914; scaffold393 TRF Tandem_Repeat 843623 843668 74 + . . scaffold393 TRF Tandem_Repeat 857198 857262 130 + . . scaffold393 TRF Tandem_Repeat 861067 861123 114 + . . scaffold393 TRF Tandem_Repeat 876559 876614 94 + . . scaffold393 TRF Tandem_Repeat 876612 876639 56 + . . scaffold393 TRF Tandem_Repeat 884149 884185 65 + . . scaffold393 TRF Tandem_Repeat 893066 893128 119 + . . scaffold393 TRF Tandem_Repeat 893234 893695 692 + . . scaffold393 TRF Tandem_Repeat 899247 899297 93 + . . scaffold393 GLEAN mRNA 900253 900498 0.996819 - . ID=CGI_10026915; scaffold393 GLEAN promoter 900499 901498 0.996819 - . ID=CGI_10026915; scaffold393 TRF Tandem_Repeat 900517 900575 57 + . . scaffold393 TRF Tandem_Repeat 900517 900569 65 + . . scaffold393 TRF Tandem_Repeat 900678 900718 82 + . . scaffold393 GLEAN promoter 901330 902329 0.999949 + . ID=CGI_10026916; scaffold393 GLEAN mRNA 902330 913220 0.999949 + . ID=CGI_10026916; scaffold393 TRF Tandem_Repeat 902567 902600 59 + . . scaffold393 TRF Tandem_Repeat 914853 914891 51 + . . scaffold393 GLEAN promoter 916893 917892 0.500169 + . ID=CGI_10026917; scaffold393 GLEAN mRNA 917893 932681 0.500169 + . ID=CGI_10026917; scaffold393 TRF Tandem_Repeat 919545 919582 58 + . . scaffold393 TRF Tandem_Repeat 929487 929527 82 + . . scaffold393 TRF Tandem_Repeat 930742 930917 127 + . . scaffold393 TRF Tandem_Repeat 934925 935516 162 + . . scaffold393 TRF Tandem_Repeat 936389 936422 50 + . . scaffold393 TRF Tandem_Repeat 969650 969861 161 + . . scaffold393 WUBlastX LTR_Gypsy 992751 992786 22 + . . scaffold393 WUBlastX LTR_Gypsy 993063 993839 55 + . . scaffold393 WUBlastX LTR_Gypsy 993168 993668 71 + . . scaffold393 WUBlastX LTR_Gypsy 993951 994046 22 + . . scaffold393 WUBlastX LTR_Gypsy 994013 994162 23 + . . scaffold393 WUBlastX LTR_Gypsy 994164 994394 25 + . . scaffold393 WUBlastX LTR_Gypsy 994203 994403 34 + . . scaffold393 WUBlastX LTR_Gypsy 994215 994325 36 + . . scaffold393 WUBlastX LTR_ERV1 994379 994486 38 + . . scaffold393 WUBlastX LTR_Gypsy 994406 995161 71 + . . scaffold393 WUBlastX LTR_Gypsy 994829 995185 75 + . . scaffold393 WUBlastX LTR_Gypsy 994972 995865 390 + . . scaffold393 WUBlastX LTR_Gypsy 995137 995880 622 + . . scaffold393 WUBlastX LTR_Gypsy 995859 996308 282 + . . scaffold393 WUBlastX LTR_Gypsy 995868 996398 132 + . . scaffold393 WUBlastX LTR_Gypsy 996302 996475 29 + . . scaffold393 WUBlastX LTR_Gypsy 996305 996445 44 + . . scaffold393 TRF Tandem_Repeat 997379 997572 224 + . . scaffold393 TRF Tandem_Repeat 1007050 1007109 120 + . . scaffold393 WUBlastX DNA_IS4EU 1008390 1008932 63 + . . scaffold393 WUBlastX DNA_IS4EU 1009588 1010418 137 + . . scaffold393 WUBlastX DNA_Kolobok-IS4 1009753 1010415 147 + . . scaffold393 TRF Tandem_Repeat 1011564 1011817 393 + . . scaffold393 GLEAN mRNA 1012285 1014094 0.999766 - . ID=CGI_10026918; scaffold393 TRF Tandem_Repeat 1012581 1012786 267 + . . scaffold393 TRF Tandem_Repeat 1012602 1012786 311 + . . scaffold393 GLEAN promoter 1014095 1015094 0.999766 - . ID=CGI_10026918; scaffold393 GLEAN mRNA 1017938 1058145 0.477986 - . ID=CGI_10026919; scaffold393 TRF Tandem_Repeat 1030008 1030550 951 + . . scaffold393 WUBlastX LINE_RTE-X 1040170 1040412 85 - . . scaffold393 WUBlastX LINE_RTE-X 1040227 1040445 98 - . . scaffold393 WUBlastX LINE_RTE-X 1040444 1041454 276 - . . scaffold393 WUBlastX LINE_RTE-X 1041466 1041843 223 - . . scaffold393 WUBlastX LINE_RTE-X 1041469 1041978 193 - . . scaffold393 WUBlastX LINE_RTE-X 1041837 1042193 33 - . . scaffold393 WUBlastX LINE_L1-Tx1 1041935 1042108 46 - . . scaffold393 WUBlastX LINE_L1-Tx1 1041941 1042048 48 - . . scaffold393 WUBlastX LINE_Rex-Babar 1042716 1042775 20 - . . scaffold393 WUBlastX LINE_RTE-X 1042826 1042972 36 - . . scaffold393 WUBlastX LINE_RTE-X 1042835 1042951 66 - . . scaffold393 WUBlastX LINE_RTE-X 1043023 1043235 64 - . . scaffold393 WUBlastX LINE_RTE-X 1043343 1043510 31 - . . scaffold393 WUBlastX LINE_RTE-X 1043376 1043525 33 - . . scaffold393 WUBlastX LINE_CR1 1043385 1043633 21 - . . scaffold393 WUBlastX LINE_RTE-X 1043409 1043513 35 - . . scaffold393 WUBlastX LINE_RTE-BovB 1043487 1043588 24 - . . scaffold393 TRF Tandem_Repeat 1052448 1052496 89 + . . scaffold393 WUBlastX DNA_Harbinger 1056750 1057616 187 - . . scaffold393 WUBlastX DNA_Harbinger 1056903 1057622 278 - . . scaffold393 WUBlastX DNA_Harbinger 1057589 1057765 71 - . . scaffold393 GLEAN promoter 1058146 1059145 0.477986 - . ID=CGI_10026919; scaffold393 GLEAN promoter 1063716 1064715 0.999605 + . ID=CGI_10026920; scaffold393 GLEAN mRNA 1064716 1077682 0.999605 + . ID=CGI_10026920; scaffold393 TRF Tandem_Repeat 1066016 1068312 818 + . . scaffold393 WUBlastX LTR_Gypsy 1069223 1069399 27 + . . scaffold393 GLEAN mRNA 1078071 1078886 0.994058 - . ID=CGI_10026921; scaffold393 GLEAN promoter 1078887 1079886 0.994058 - . ID=CGI_10026921; scaffold393 GLEAN mRNA 1082182 1084111 0.9892 - . ID=CGI_10026922; scaffold393 GLEAN promoter 1084112 1085111 0.9892 - . ID=CGI_10026922; scaffold393 GLEAN mRNA 1085646 1094379 0.648556 - . ID=CGI_10026923; scaffold393 GLEAN promoter 1094380 1095379 0.648556 - . ID=CGI_10026923; scaffold393 TRF Tandem_Repeat 1100350 1100376 54 + . . scaffold393 GLEAN mRNA 1106993 1111711 0.999652 - . ID=CGI_10026924; scaffold393 GLEAN promoter 1111712 1112711 0.999652 - . ID=CGI_10026924; scaffold393 TRF Tandem_Repeat 1113061 1114029 1656 + . . scaffold393 TRF Tandem_Repeat 1114043 1114112 113 + . . scaffold393 TRF Tandem_Repeat 1114043 1114112 86 + . . scaffold393 GLEAN mRNA 1115497 1117128 0.998691 - . ID=CGI_10026925; scaffold393 TRF Tandem_Repeat 1115689 1115739 102 + . . scaffold393 GLEAN promoter 1117129 1118128 0.998691 - . ID=CGI_10026925; scaffold393 GLEAN mRNA 1117605 1132704 0.618808 - . ID=CGI_10026926; scaffold393 GLEAN promoter 1132705 1133704 0.618808 - . ID=CGI_10026926; scaffold393 TRF Tandem_Repeat 1132962 1133171 384 + . . scaffold393 WUBlastX LINE_RTE-BovB 1134611 1134787 75 + . . scaffold393 TRF Tandem_Repeat 1139519 1139565 60 + . . scaffold393 GLEAN promoter 1140450 1141449 0.937431 + . ID=CGI_10026927; scaffold393 GLEAN mRNA 1141450 1149336 0.937431 + . ID=CGI_10026927; scaffold393 TRF Tandem_Repeat 1150388 1151046 499 + . . scaffold393 TRF Tandem_Repeat 1152804 1152850 94 + . . scaffold393 GLEAN promoter 1154705 1155704 0.999656 + . ID=CGI_10026928; scaffold393 GLEAN mRNA 1155705 1168503 0.999656 + . ID=CGI_10026928; scaffold393 TRF Tandem_Repeat 1165243 1165475 161 + . . scaffold393 TRF Tandem_Repeat 1166092 1166185 125 + . . scaffold393 TRF Tandem_Repeat 1166232 1166320 128 + . . scaffold393 GLEAN promoter 1173921 1174920 0.999572 + . ID=CGI_10026929; scaffold393 GLEAN mRNA 1174921 1175727 0.999572 + . ID=CGI_10026929; scaffold393 GLEAN promoter 1175080 1176079 0.432888 + . ID=CGI_10026930; scaffold393 GLEAN mRNA 1176080 1182738 0.432888 + . ID=CGI_10026930; scaffold393 GLEAN mRNA 1189298 1195298 0.588681 - . ID=CGI_10026931; scaffold393 WUBlastX DNA_hAT-Blackja 1191618 1191890 71 + . . scaffold393 TRF Tandem_Repeat 1193436 1193478 52 + . . scaffold393 GLEAN promoter 1195299 1196298 0.588681 - . ID=CGI_10026931; scaffold393 WUBlastX LINE_L2 1196901 1197026 39 - . . scaffold393 WUBlastX LINE_RTE-X 1197026 1197244 126 - . . scaffold393 WUBlastX LINE_CR1 1197032 1197286 57 - . . scaffold393 WUBlastX DNA_En-Spm 1202328 1202801 241 + . . scaffold393 WUBlastX LINE_L1 1215780 1216151 20 - . . scaffold393 WUBlastX LINE_L1-Tx1 1215906 1216151 74 - . . scaffold393 WUBlastX LINE_L1-Tx1 1216180 1216812 141 - . . scaffold393 TRF Tandem_Repeat 1216814 1216860 94 + . . scaffold393 TRF Tandem_Repeat 1218342 1218512 162 + . . scaffold39316 GLEAN promoter 808 1807 0.78892 + . ID=CGI_10003305; scaffold39316 GLEAN mRNA 1808 9547 0.78892 + . ID=CGI_10003305; scaffold39316 GLEAN mRNA 8261 24744 0.992949 - . ID=CGI_10003306; scaffold39316 GLEAN promoter 24745 25744 0.992949 - . ID=CGI_10003306; scaffold39316 GLEAN promoter 36475 37474 1 + . ID=CGI_10003307; scaffold39316 GLEAN mRNA 37475 41640 1 + . ID=CGI_10003307; scaffold39320 TRF Tandem_Repeat 387 834 612 + . . scaffold39320 TRF Tandem_Repeat 3823 6207 2726 + . . scaffold39320 TRF Tandem_Repeat 3853 6207 3037 + . . scaffold39320 TRF Tandem_Repeat 12079 12558 348 + . . scaffold39320 TRF Tandem_Repeat 13077 13530 337 + . . scaffold39320 WUBlastX LINE_RTE-X 13535 13624 22 + . . scaffold39320 WUBlastX LINE_RTE-X 13581 13739 66 + . . scaffold39320 WUBlastX LINE_RTE-X 13617 13739 72 + . . scaffold39320 TRF Tandem_Repeat 38718 38773 112 + . . scaffold39320 TRF Tandem_Repeat 39366 39405 80 + . . scaffold39320 TRF Tandem_Repeat 39753 39791 64 + . . scaffold39320 TRF Tandem_Repeat 39862 39917 85 + . . scaffold39320 WUBlastX LINE_RTE-X 42850 43236 43 - . . scaffold39320 WUBlastX LINE_RTE-X 42880 43137 53 - . . scaffold39320 WUBlastX LINE_RTE-X 43003 43137 54 - . . scaffold39320 TRF Tandem_Repeat 47443 47478 72 + . . scaffold39320 GLEAN mRNA 51030 65592 0.999676 - . ID=CGI_10003324; scaffold39320 TRF Tandem_Repeat 55501 55594 60 + . . scaffold39320 TRF Tandem_Repeat 58530 58801 368 + . . scaffold39320 TRF Tandem_Repeat 64476 64518 86 + . . scaffold39320 GLEAN promoter 65593 66592 0.999676 - . ID=CGI_10003324; scaffold39320 GLEAN promoter 66484 67483 0.997972 + . ID=CGI_10003325; scaffold39320 GLEAN mRNA 67484 69316 0.997972 + . ID=CGI_10003325; scaffold39326 WUBlastX DNA_TcMar-Tc1 1355 1636 115 - . . scaffold39326 WUBlastX DNA_TcMar-Tc1 1660 2337 138 - . . scaffold39326 WUBlastX LTR_DIRS 7600 8250 151 - . . scaffold39326 WUBlastX LTR_DIRS 7654 8367 33 - . . scaffold39326 WUBlastX LTR_DIRS 8373 8555 70 - . . scaffold39326 WUBlastX LTR_DIRS 8576 8905 118 - . . scaffold39326 WUBlastX LTR_DIRS 9421 9813 47 - . . scaffold39326 TRF Tandem_Repeat 16130 17103 1251 + . . scaffold39326 TRF Tandem_Repeat 21065 21145 155 + . . scaffold39326 WUBlastX DNA_Academ 40352 40852 171 + . . scaffold39326 WUBlastX DNA_Academ 40848 41030 43 + . . scaffold39326 WUBlastX DNA_Academ 41079 41738 72 - . . scaffold39326 WUBlastX DNA_Academ 41124 41342 82 - . . scaffold39326 WUBlastX DNA_Academ 41476 41589 80 - . . scaffold39326 WUBlastX DNA_Academ 41751 42086 164 - . . scaffold39326 WUBlastX DNA_Academ 42089 42469 229 - . . scaffold39326 WUBlastX DNA_Academ 42089 42736 206 - . . scaffold39326 WUBlastX LTR_DIRS? 61568 61714 56 + . . scaffold39334 GLEAN mRNA 3201 8856 1 - . ID=CGI_10003302; scaffold39334 TRF Tandem_Repeat 5422 5470 57 + . . scaffold39334 GLEAN promoter 8857 9856 1 - . ID=CGI_10003302; scaffold39334 TRF Tandem_Repeat 9203 9252 73 + . . scaffold39334 TRF Tandem_Repeat 17784 17845 124 + . . scaffold39334 WUBlastX DNA_TcMar-Tc1 20167 20301 61 - . . scaffold39334 WUBlastX DNA_TcMar-Tc1 20301 20861 272 - . . scaffold39334 WUBlastX DNA_TcMar-Tc1 20412 21134 165 - . . scaffold39334 WUBlastX LTR_Gypsy 22367 22936 139 - . . scaffold39334 WUBlastX LTR_Gypsy 22631 22936 154 - . . scaffold39334 WUBlastX LTR_Gypsy 23744 23788 27 - . . scaffold39334 TRF Tandem_Repeat 26612 26661 68 + . . scaffold39334 TRF Tandem_Repeat 26615 26663 64 + . . scaffold39334 GLEAN mRNA 27630 32086 1 - . ID=CGI_10003303; scaffold39334 GLEAN promoter 32087 33086 1 - . ID=CGI_10003303; scaffold39334 TRF Tandem_Repeat 43817 43899 78 + . . scaffold39334 TRF Tandem_Repeat 43817 43899 78 + . . scaffold39334 WUBlastX DNA_TcMar-Tc1 45111 46073 154 - . . scaffold39334 WUBlastX LTR_Gypsy 47304 47873 120 - . . scaffold39334 WUBlastX LTR_Gypsy 47568 47873 146 - . . scaffold39334 WUBlastX LTR_Gypsy 47914 47982 29 - . . scaffold39334 TRF Tandem_Repeat 50819 50896 90 + . . scaffold39334 GLEAN mRNA 51960 57426 0.730931 - . ID=CGI_10003304; scaffold39334 GLEAN promoter 57427 58426 0.730931 - . ID=CGI_10003304; scaffold39346 TRF Tandem_Repeat 1587 1613 54 + . . scaffold39346 WUBlastX LTR_Gypsy 33525 33671 52 + . . scaffold39346 WUBlastX LTR_Gypsy 33531 33854 25 + . . scaffold39346 WUBlastX LTR_Gypsy 33558 33782 45 + . . scaffold39346 WUBlastX LTR_Gypsy 33561 33728 67 + . . scaffold39346 TRF Tandem_Repeat 46535 46561 54 + . . scaffold39352 TRF Tandem_Repeat 8190 8241 70 + . . scaffold39352 TRF Tandem_Repeat 25231 25277 67 + . . scaffold39352 TRF Tandem_Repeat 25983 26054 144 + . . scaffold39352 WUBlastX LINE_L1 31236 31925 24 + . . scaffold39352 WUBlastX LINE_L2 31344 32057 113 + . . scaffold39352 WUBlastX LINE_L2 31506 32054 115 + . . scaffold39352 WUBlastX LINE_L2 31644 32117 136 + . . scaffold39352 WUBlastX LINE_L1-Tx1 32392 33216 593 + . . scaffold39352 GLEAN mRNA 37662 41193 0.901972 - . ID=CGI_10003323; scaffold39352 GLEAN promoter 41194 42193 0.901972 - . ID=CGI_10003323; scaffold39352 TRF Tandem_Repeat 56814 56862 98 + . . scaffold39352 WUBlastX LINE_RTE-X 57249 58025 27 - . . scaffold39352 WUBlastX LINE_RTE-X 57465 57956 28 - . . scaffold39352 WUBlastX LINE_LOA 57735 57983 31 - . . scaffold39352 WUBlastX LINE_Jockey 57774 57962 47 - . . scaffold39352 WUBlastX LINE_L2 57940 59253 181 - . . scaffold39352 WUBlastX LINE_RTE-X 57946 59055 371 - . . scaffold39352 WUBlastX LINE_L2-Hydra 59135 59917 90 - . . scaffold39352 WUBlastX LINE_L2-Hydra 59950 60273 65 - . . scaffold39352 WUBlastX LINE_RTE-X 60025 60375 77 - . . scaffold39352 WUBlastX LINE_L1 60467 60511 20 - . . scaffold39352 TRF Tandem_Repeat 64194 64246 106 + . . scaffold39352 TRF Tandem_Repeat 67964 68019 112 + . . scaffold39358 TRF Tandem_Repeat 4623 5311 699 + . . scaffold39358 WUBlastX LTR_Ngaro 18979 19299 67 + . . scaffold39358 WUBlastX LTR_Ngaro 19114 19395 107 + . . scaffold39358 TRF Tandem_Repeat 19412 19447 72 + . . scaffold39358 WUBlastX LTR_Ngaro 19927 20073 40 + . . scaffold39358 WUBlastX LTR_Ngaro 20084 20539 221 + . . scaffold39358 WUBlastX LTR_Ngaro 20544 20636 35 + . . scaffold39358 WUBlastX LTR_Ngaro 20596 20820 76 + . . scaffold39358 WUBlastX LTR_Ngaro 20641 20817 94 + . . scaffold39358 WUBlastX LTR_Ngaro 21030 21809 59 + . . scaffold39358 WUBlastX LTR_Ngaro 21138 21776 63 + . . scaffold39358 WUBlastX LTR_Ngaro 21525 21770 86 + . . scaffold39358 TRF Tandem_Repeat 25422 25461 80 + . . scaffold39358 GLEAN promoter 35445 36444 0.716437 + . ID=CGI_10003326; scaffold39358 GLEAN mRNA 36445 38443 0.716437 + . ID=CGI_10003326; scaffold39358 WUBlastX DNA_IS4EU 37602 37955 35 + . . scaffold39358 WUBlastX DNA_IS4EU 37704 37958 64 + . . scaffold39358 WUBlastX DNA_IS4EU 37946 38419 268 + . . scaffold39358 WUBlastX DNA_Kolobok-IS4 38618 38842 27 - . . scaffold39358 WUBlastX DNA_IS4EU 38654 38842 34 - . . scaffold39358 WUBlastX DNA_IS4EU 38690 38866 84 - . . scaffold39358 WUBlastX DNA_Kolobok-IS4 39116 39172 47 - . . scaffold39358 WUBlastX DNA_Kolobok-IS4 39763 39858 22 - . . scaffold39358 WUBlastX DNA_IS4EU 39778 39885 44 - . . scaffold39358 TRF Tandem_Repeat 44764 44797 68 + . . scaffold39358 TRF Tandem_Repeat 45409 45496 176 + . . scaffold39358 TRF Tandem_Repeat 46460 46522 117 + . . scaffold39358 WUBlastX DNA_MuDR 57173 57250 31 - . . scaffold39358 WUBlastX DNA_MuDR 57551 57859 155 - . . scaffold39358 WUBlastX DNA_MuDR 57551 58372 55 - . . scaffold39358 TRF Tandem_Repeat 60335 60373 60 + . . scaffold39358 TRF Tandem_Repeat 60382 60442 113 + . . scaffold39364 WUBlastX LINE_CR1 1320 1436 30 + . . scaffold39364 WUBlastX LINE_CR1-L2 1338 1433 64 + . . scaffold39364 TRF Tandem_Repeat 1456 1565 120 + . . scaffold39364 TRF Tandem_Repeat 3482 3561 53 + . . scaffold39364 WUBlastX LINE_L1-Tx1 3565 3738 32 + . . scaffold39364 WUBlastX LINE_L1-Tx1 3610 3744 50 + . . scaffold39364 WUBlastX LINE_CR1 3741 3854 65 + . . scaffold39364 WUBlastX LINE_CR1 3750 3875 61 + . . scaffold39364 WUBlastX LINE_RTE-BovB 3756 3839 67 + . . scaffold39364 WUBlastX LINE_L2 3877 3942 23 + . . scaffold39364 WUBlastX LINE_RTE-X 3911 4474 149 + . . scaffold39364 WUBlastX LINE_RTE-X 4540 4866 117 + . . scaffold39364 WUBlastX LINE_R2 4940 5059 22 + . . scaffold39364 WUBlastX LINE_RTE-X 5599 5763 36 + . . scaffold39364 WUBlastX LINE_RTE-X 5783 6127 52 + . . scaffold39364 WUBlastX LINE_RTE-X 5849 6019 53 + . . scaffold39364 GLEAN mRNA 8490 11301 1 - . ID=CGI_10003329; scaffold39364 GLEAN promoter 10919 11918 0.739127 + . ID=CGI_10003330; scaffold39364 GLEAN promoter 11302 12301 1 - . ID=CGI_10003329; scaffold39364 GLEAN mRNA 11919 21902 0.739127 + . ID=CGI_10003330; scaffold39364 GLEAN mRNA 22514 35877 1 - . ID=CGI_10003331; scaffold39364 GLEAN promoter 23864 24863 0.999284 + . ID=CGI_10003332; scaffold39364 GLEAN mRNA 24864 50799 0.999284 + . ID=CGI_10003332; scaffold39364 TRF Tandem_Repeat 27131 27202 90 + . . scaffold39364 TRF Tandem_Repeat 27134 27202 120 + . . scaffold39364 GLEAN promoter 35878 36877 1 - . ID=CGI_10003331; scaffold39364 TRF Tandem_Repeat 46546 46614 106 + . . scaffold39364 TRF Tandem_Repeat 49345 49390 85 + . . scaffold39364 TRF Tandem_Repeat 49432 49460 51 + . . scaffold39364 GLEAN mRNA 51418 54689 1 - . ID=CGI_10003333; scaffold39364 TRF Tandem_Repeat 53684 53710 54 + . . scaffold39364 GLEAN promoter 54690 55689 1 - . ID=CGI_10003333; scaffold39364 WUBlastX LINE_RTE-X 55846 57102 609 + . . scaffold39364 WUBlastX LINE_CR1 57092 57235 22 + . . scaffold39364 WUBlastX LINE_L2 57128 57202 27 + . . scaffold39364 WUBlastX LINE_RTE-X 57152 57838 183 + . . scaffold39364 WUBlastX LINE_RTE-X 57209 57979 164 + . . scaffold39364 WUBlastX LTR_Gypsy 59596 60189 23 + . . scaffold39364 WUBlastX LTR_Gypsy 59704 60189 65 + . . scaffold39364 WUBlastX LTR_Gypsy 59782 60186 85 + . . scaffold39364 WUBlastX LTR_Gypsy-Cigr 59887 60189 110 + . . scaffold39364 WUBlastX LTR_Gypsy 60176 62074 651 + . . scaffold39364 WUBlastX LTR_Gypsy 60473 62617 687 + . . scaffold39364 WUBlastX LTR_Gypsy 62586 63500 423 + . . scaffold39364 WUBlastX LTR_Gypsy 62610 63692 270 + . . scaffold39364 WUBlastX LTR_Gypsy 63596 63829 75 + . . scaffold39364 WUBlastX DNA_TcMar-Tc2 64963 65778 109 - . . scaffold39364 GLEAN promoter 65891 66890 0.996195 + . ID=CGI_10003334; scaffold39364 GLEAN mRNA 66891 67610 0.996195 + . ID=CGI_10003334; scaffold39364 GLEAN promoter 67235 68234 0.99973 + . ID=CGI_10003335; scaffold39364 GLEAN mRNA 68235 68780 0.99973 + . ID=CGI_10003335; scaffold39366 GLEAN promoter 43003 44002 0.74252 + . ID=CGI_10003339; scaffold39366 GLEAN mRNA 44003 64665 0.74252 + . ID=CGI_10003339; scaffold39368 WUBlastX LINE_RTE-X 2067 2162 37 - . . scaffold39368 WUBlastX LINE_RTE-X 2159 2308 25 - . . scaffold39368 TRF Tandem_Repeat 5437 5499 126 + . . scaffold39368 GLEAN promoter 5519 6518 1 + . ID=CGI_10003308; scaffold39368 GLEAN mRNA 6519 16111 1 + . ID=CGI_10003308; scaffold39368 GLEAN mRNA 23076 25434 1 - . ID=CGI_10003309; scaffold39368 GLEAN promoter 25435 26434 1 - . ID=CGI_10003309; scaffold39368 TRF Tandem_Repeat 25988 26038 102 + . . scaffold39368 GLEAN promoter 28638 29637 0.996296 + . ID=CGI_10003310; scaffold39368 GLEAN mRNA 29638 53560 0.996296 + . ID=CGI_10003310; scaffold39368 TRF Tandem_Repeat 33626 33693 118 + . . scaffold39368 TRF Tandem_Repeat 39784 39984 166 + . . scaffold39368 GLEAN mRNA 45548 46003 0.777422 - . ID=CGI_10003311; scaffold39368 GLEAN promoter 46004 47003 0.777422 - . ID=CGI_10003311; scaffold39368 TRF Tandem_Repeat 48303 48338 72 + . . scaffold39368 TRF Tandem_Repeat 51891 52055 118 + . . scaffold39368 TRF Tandem_Repeat 57393 57442 75 + . . scaffold39368 TRF Tandem_Repeat 66622 69076 3929 + . . scaffold39380 GLEAN promoter 1 185 0.999464 + . ID=CGI_10003327; scaffold39380 GLEAN mRNA 186 12028 0.999464 + . ID=CGI_10003327; scaffold39380 TRF Tandem_Repeat 25660 25718 111 + . . scaffold39380 TRF Tandem_Repeat 30324 30353 60 + . . scaffold39380 TRF Tandem_Repeat 35805 35945 78 + . . scaffold39380 GLEAN mRNA 37532 46046 0.230851 - . ID=CGI_10003328; scaffold39380 TRF Tandem_Repeat 39175 39994 1173 + . . scaffold39380 GLEAN promoter 46047 47046 0.230851 - . ID=CGI_10003328; scaffold39380 WUBlastX DNA_IS4EU 54290 54799 35 + . . scaffold39380 WUBlastX DNA_Academ 55943 56446 112 + . . scaffold39380 WUBlastX DNA_Crypton 58692 59036 64 + . . scaffold39380 WUBlastX DNA_Sola 59549 59719 42 + . . scaffold39384 WUBlastX LTR_Gypsy 6811 7017 76 + . . scaffold39384 WUBlastX LTR_Gypsy 7017 7178 22 + . . scaffold39384 WUBlastX LTR_Gypsy 7017 7241 21 + . . scaffold39384 TRF Tandem_Repeat 42153 42514 419 + . . scaffold39384 WUBlastX LTR_Gypsy 44227 44409 83 - . . scaffold39384 WUBlastX LTR_Gypsy 44918 45343 301 + . . scaffold39384 WUBlastX LTR_Gypsy 44936 45496 127 + . . scaffold39384 WUBlastX LTR_Gypsy 45330 45533 64 + . . scaffold39384 GLEAN mRNA 46885 51159 0.513341 - . ID=CGI_10003350; scaffold39384 GLEAN promoter 51160 52159 0.513341 - . ID=CGI_10003350; scaffold39384 TRF Tandem_Repeat 65637 65684 60 + . . scaffold39390 GLEAN promoter 1158 2157 1 + . ID=CGI_10003344; scaffold39390 GLEAN mRNA 2158 9682 1 + . ID=CGI_10003344; scaffold39390 GLEAN promoter 10907 11906 0.5 + . ID=CGI_10003345; scaffold39390 GLEAN mRNA 11907 13770 0.5 + . ID=CGI_10003345; scaffold39390 GLEAN mRNA 13886 14382 0.999992 - . ID=CGI_10003346; scaffold39390 GLEAN promoter 14383 15382 0.999992 - . ID=CGI_10003346; scaffold39390 GLEAN mRNA 16276 29627 0.840241 - . ID=CGI_10003347; scaffold39390 GLEAN promoter 29628 30627 0.840241 - . ID=CGI_10003347; scaffold39390 GLEAN promoter 31560 32559 0.866657 + . ID=CGI_10003348; scaffold39390 GLEAN mRNA 32560 47782 0.866657 + . ID=CGI_10003348; scaffold39390 GLEAN mRNA 52162 58412 0.999543 - . ID=CGI_10003349; scaffold39390 GLEAN promoter 58413 59412 0.999543 - . ID=CGI_10003349; scaffold39394 TRF Tandem_Repeat 13260 13301 63 + . . scaffold39394 GLEAN promoter 21219 22218 0.74041 + . ID=CGI_10003357; scaffold39394 GLEAN mRNA 22219 28975 0.74041 + . ID=CGI_10003357; scaffold39394 TRF Tandem_Repeat 26223 26256 68 + . . scaffold39394 WUBlastX DNA_Harbinger 28300 28677 61 + . . scaffold39394 WUBlastX DNA_Harbinger 30004 31068 1059 - . . scaffold39394 WUBlastX DNA_Harbinger 31068 31238 36 - . . scaffold39394 GLEAN mRNA 52515 57148 0.99428 - . ID=CGI_10003358; scaffold39394 GLEAN promoter 57149 58148 0.99428 - . ID=CGI_10003358; scaffold39394 TRF Tandem_Repeat 68199 69097 1075 + . . scaffold39394 TRF Tandem_Repeat 68276 69102 1047 + . . scaffold39394 TRF Tandem_Repeat 70515 70564 84 + . . scaffold39394 TRF Tandem_Repeat 70518 70563 58 + . . scaffold394 GLEAN promoter 3698 4697 0.651123 + . ID=CGI_10022057; scaffold394 TRF Tandem_Repeat 4593 4650 116 + . . scaffold394 GLEAN mRNA 4698 5176 0.651123 + . ID=CGI_10022057; scaffold394 WUBlastX LINE_RTE-X 12521 12916 43 + . . scaffold394 WUBlastX LINE_RTE-X 12578 12880 94 + . . scaffold394 WUBlastX LINE_RTE-X 12599 12850 111 + . . scaffold394 GLEAN mRNA 14422 23588 0.999742 - . ID=CGI_10022058; scaffold394 TRF Tandem_Repeat 20607 20728 113 + . . scaffold394 TRF Tandem_Repeat 21096 21152 114 + . . scaffold394 GLEAN promoter 22992 23991 1 + . ID=CGI_10022059; scaffold394 GLEAN promoter 23589 24588 0.999742 - . ID=CGI_10022058; scaffold394 GLEAN mRNA 23992 26514 1 + . ID=CGI_10022059; scaffold394 TRF Tandem_Repeat 25244 25332 81 + . . scaffold394 GLEAN mRNA 29606 33089 0.89357 - . ID=CGI_10022060; scaffold394 GLEAN promoter 33090 34089 0.89357 - . ID=CGI_10022060; scaffold394 GLEAN mRNA 42236 42616 0.979657 - . ID=CGI_10022061; scaffold394 GLEAN promoter 42617 43616 0.979657 - . ID=CGI_10022061; scaffold394 TRF Tandem_Repeat 46482 46681 375 + . . scaffold394 GLEAN mRNA 47324 60952 0.893195 - . ID=CGI_10022062; scaffold394 TRF Tandem_Repeat 50927 50974 96 + . . scaffold394 GLEAN promoter 54517 55516 0.840059 + . ID=CGI_10022063; scaffold394 GLEAN mRNA 55517 68616 0.840059 + . ID=CGI_10022063; scaffold394 TRF Tandem_Repeat 60641 60826 126 + . . scaffold394 GLEAN promoter 60953 61952 0.893195 - . ID=CGI_10022062; scaffold394 TRF Tandem_Repeat 62700 62836 78 + . . scaffold394 WUBlastX DNA_TcMar-Fot1 78108 78974 179 + . . scaffold394 WUBlastX DNA_TcMar-Fot1 78979 79056 27 + . . scaffold394 WUBlastX DNA_TcMar-Fot1 78979 79071 20 + . . scaffold394 WUBlastX DNA_TcMar-Fot1 78979 79044 33 + . . scaffold394 GLEAN mRNA 83050 84181 0.420755 - . ID=CGI_10022064; scaffold394 GLEAN promoter 84182 85181 0.420755 - . ID=CGI_10022064; scaffold394 WUBlastX LTR_Ngaro 86470 86577 59 - . . scaffold394 WUBlastX LTR_Ngaro 86580 86963 231 - . . scaffold394 WUBlastX LTR_Ngaro 86960 87178 120 - . . scaffold394 WUBlastX LTR_Ngaro 86963 87238 79 - . . scaffold394 WUBlastX LTR_Ngaro 87184 87465 22 - . . scaffold394 WUBlastX LTR_Ngaro 87190 87549 21 - . . scaffold394 WUBlastX LTR_Ngaro 87190 87420 62 - . . scaffold394 TRF Tandem_Repeat 88099 88910 499 + . . scaffold394 GLEAN promoter 92111 93110 0.733393 + . ID=CGI_10022065; scaffold394 GLEAN mRNA 93111 93314 0.733393 + . ID=CGI_10022065; scaffold394 WUBlastX DNA_Kolobok 94693 95523 104 - . . scaffold394 WUBlastX DNA_Kolobok 94723 96027 71 - . . scaffold394 WUBlastX DNA_TcMar-Fot1 99677 99913 161 + . . scaffold394 WUBlastX LTR_Pao 100430 100495 20 - . . scaffold394 WUBlastX LTR_Pao 100758 101144 189 - . . scaffold394 WUBlastX LTR_Pao 100818 101963 236 - . . scaffold394 WUBlastX LTR_Pao 101131 101421 288 - . . scaffold394 WUBlastX LTR_Pao 101469 102233 616 - . . scaffold394 WUBlastX LTR_Pao 101469 102893 532 - . . scaffold394 WUBlastX LTR_Pao 101892 103289 184 - . . scaffold394 WUBlastX LTR_Pao 103289 103372 25 - . . scaffold394 WUBlastX LTR_Pao 103336 103467 43 - . . scaffold394 WUBlastX RC_Helitron 106669 106857 58 - . . scaffold394 WUBlastX RC_Helitron 106868 107764 193 - . . scaffold394 WUBlastX RC_Helitron 107761 108039 133 - . . scaffold394 WUBlastX RC_Helitron 107995 108132 106 - . . scaffold394 WUBlastX RC_Helitron 108132 108464 118 - . . scaffold394 TRF Tandem_Repeat 113931 114912 1358 + . . scaffold394 TRF Tandem_Repeat 125101 125132 55 + . . scaffold394 TRF Tandem_Repeat 130852 130901 84 + . . scaffold394 TRF Tandem_Repeat 130853 130898 58 + . . scaffold394 TRF Tandem_Repeat 132115 133362 1735 + . . scaffold394 GLEAN mRNA 136274 137471 0.999991 - . ID=CGI_10022066; scaffold394 GLEAN promoter 137472 138471 0.999991 - . ID=CGI_10022066; scaffold394 WUBlastX LINE_RTE-BovB 139550 139897 25 + . . scaffold394 WUBlastX LINE_RTE-BovB 140185 140292 28 + . . scaffold394 WUBlastX LINE_RTE-BovB 140221 140295 34 + . . scaffold394 WUBlastX LINE_RTE-BovB 140233 140379 30 + . . scaffold394 WUBlastX LINE_RTE-BovB 140704 141015 22 + . . scaffold394 WUBlastX LINE_RTE-BovB 140845 141015 49 + . . scaffold394 GLEAN mRNA 146599 148695 0.530826 - . ID=CGI_10022067; scaffold394 GLEAN promoter 148696 149695 0.530826 - . ID=CGI_10022067; scaffold394 WUBlastX LINE_RTE-X 150999 151295 32 + . . scaffold394 GLEAN mRNA 156712 182147 0.69554 - . ID=CGI_10022068; scaffold394 TRF Tandem_Repeat 172709 173092 716 + . . scaffold394 GLEAN promoter 180963 181962 0.58612 + . ID=CGI_10022069; scaffold394 GLEAN mRNA 181963 184698 0.58612 + . ID=CGI_10022069; scaffold394 GLEAN promoter 182148 183147 0.69554 - . ID=CGI_10022068; scaffold394 GLEAN mRNA 187586 211097 0.999604 - . ID=CGI_10022070; scaffold394 TRF Tandem_Repeat 198106 198492 480 + . . scaffold394 TRF Tandem_Repeat 198136 198492 420 + . . scaffold394 TRF Tandem_Repeat 201989 202025 74 + . . scaffold394 GLEAN promoter 211098 212097 0.999604 - . ID=CGI_10022070; scaffold394 GLEAN mRNA 214124 219814 0.999572 - . ID=CGI_10022071; scaffold394 TRF Tandem_Repeat 216910 216955 76 + . . scaffold394 GLEAN promoter 219815 220814 0.999572 - . ID=CGI_10022071; scaffold394 TRF Tandem_Repeat 224565 224627 126 + . . scaffold394 GLEAN mRNA 224709 229510 1 - . ID=CGI_10022072; scaffold394 GLEAN promoter 228625 229624 0.999649 + . ID=CGI_10022073; scaffold394 GLEAN promoter 229511 230510 1 - . ID=CGI_10022072; scaffold394 GLEAN mRNA 229625 258608 0.999649 + . ID=CGI_10022073; scaffold394 TRF Tandem_Repeat 231300 231380 162 + . . scaffold394 TRF Tandem_Repeat 243937 244037 139 + . . scaffold394 TRF Tandem_Repeat 253719 253744 52 + . . scaffold394 TRF Tandem_Repeat 256944 256986 86 + . . scaffold394 GLEAN mRNA 263052 266168 0.999607 - . ID=CGI_10022074; scaffold394 GLEAN promoter 265626 266625 0.791413 + . ID=CGI_10022075; scaffold394 GLEAN promoter 266169 267168 0.999607 - . ID=CGI_10022074; scaffold394 GLEAN mRNA 266626 274228 0.791413 + . ID=CGI_10022075; scaffold394 GLEAN mRNA 278003 283177 0.49564 - . ID=CGI_10022076; scaffold394 TRF Tandem_Repeat 281673 281736 128 + . . scaffold394 GLEAN promoter 283178 284177 0.49564 - . ID=CGI_10022076; scaffold394 TRF Tandem_Repeat 283190 283533 172 + . . scaffold394 TRF Tandem_Repeat 285520 285863 215 + . . scaffold394 GLEAN promoter 285632 286631 0.296609 + . ID=CGI_10022077; scaffold394 GLEAN mRNA 286632 296945 0.296609 + . ID=CGI_10022077; scaffold394 WUBlastX DNA_Kolobok 292104 292223 20 + . . scaffold394 WUBlastX DNA_Kolobok 292479 292697 92 + . . scaffold394 WUBlastX DNA_Kolobok 293295 293537 101 - . . scaffold394 GLEAN promoter 298461 299460 1 + . ID=CGI_10022078; scaffold394 GLEAN mRNA 299461 304373 1 + . ID=CGI_10022078; scaffold394 TRF Tandem_Repeat 302167 302216 66 + . . scaffold394 GLEAN mRNA 305050 350201 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 312939 312984 92 + . . scaffold394 TRF Tandem_Repeat 321157 321187 62 + . . scaffold394 GLEAN promoter 321485 322484 0.999735 + . ID=CGI_10022080; scaffold394 GLEAN mRNA 322485 330565 0.999735 + . ID=CGI_10022080; scaffold394 TRF Tandem_Repeat 326541 326578 51 + . . scaffold394 TRF Tandem_Repeat 326716 327618 1314 + . . scaffold394 TRF Tandem_Repeat 328551 328696 73 + . . scaffold394 TRF Tandem_Repeat 328613 328760 102 + . . scaffold394 TRF Tandem_Repeat 338474 338504 62 + . . scaffold394 TRF Tandem_Repeat 349068 349127 50 + . . scaffold394 GLEAN promoter 350202 351201 0.874382 - . ID=CGI_10022079; scaffold394 TRF Tandem_Repeat 352679 352728 100 + . . scaffold394 GLEAN mRNA 352748 354903 0.990257 - . ID=CGI_10022081; scaffold394 GLEAN promoter 353478 354477 1 + . ID=CGI_10022082; scaffold394 GLEAN mRNA 354478 358300 1 + . ID=CGI_10022082; scaffold394 GLEAN promoter 354904 355903 0.990257 - . ID=CGI_10022081; scaffold394 WUBlastX LINE_L1-Tx1 362064 362381 29 - . . scaffold394 WUBlastX LINE_L1-Tx1 362148 362372 47 - . . scaffold394 WUBlastX LINE_L1-Tx1 362187 362516 44 - . . scaffold394 WUBlastX LINE_L1-Tx1 362187 362417 45 - . . scaffold394 WUBlastX LINE_L1-Tx1 362560 363453 140 - . . scaffold394 WUBlastX LINE_L1-Tx1 362698 363468 236 - . . scaffold394 WUBlastX LINE_L1-Tx1 363432 363551 25 - . . scaffold394 GLEAN promoter 364175 365174 1 + . ID=CGI_10022083; scaffold394 GLEAN mRNA 365175 371139 1 + . ID=CGI_10022083; scaffold394 TRF Tandem_Repeat 373993 374040 96 + . . scaffold394 TRF Tandem_Repeat 374472 374501 60 + . . scaffold394 GLEAN mRNA 379442 417626 0.69894 - . ID=CGI_10022084; scaffold394 TRF Tandem_Repeat 400693 400825 72 + . . scaffold394 TRF Tandem_Repeat 402821 402864 88 + . . scaffold394 TRF Tandem_Repeat 408770 408821 104 + . . scaffold394 TRF Tandem_Repeat 415036 415094 66 + . . scaffold394 GLEAN promoter 417627 418626 0.69894 - . ID=CGI_10022084; scaffold394 TRF Tandem_Repeat 425788 426187 667 + . . scaffold394 TRF Tandem_Repeat 432435 432461 54 + . . scaffold394 WUBlastX LINE_CR1 432606 434384 1460 - . . scaffold394 WUBlastX LINE_L1-Tx1 433104 434708 52 - . . scaffold394 GLEAN promoter 434520 435519 0.532272 + . ID=CGI_10022085; scaffold394 GLEAN mRNA 435520 450975 0.532272 + . ID=CGI_10022085; scaffold394 WUBlastX LTR_Gypsy 436485 437216 20 + . . scaffold394 WUBlastX LTR_DIRS 436623 437234 201 + . . scaffold394 WUBlastX LTR_DIRS 436776 437234 337 + . . scaffold394 WUBlastX LTR_Gypsy-Cigr 437007 437276 77 + . . scaffold394 TRF Tandem_Repeat 449700 449842 175 + . . scaffold394 GLEAN mRNA 450763 459758 0.998492 - . ID=CGI_10022086; scaffold394 TRF Tandem_Repeat 451039 451081 50 + . . scaffold394 TRF Tandem_Repeat 455091 455122 64 + . . scaffold394 GLEAN promoter 459759 460758 0.998492 - . ID=CGI_10022086; scaffold394 WUBlastX LINE_RTE-X 466723 466971 36 - . . scaffold394 WUBlastX LINE_RTE-X 466840 466971 41 - . . scaffold394 WUBlastX LINE_RTE-X 467240 467347 27 - . . scaffold394 WUBlastX LINE_RTE-X 467258 467362 48 - . . scaffold394 WUBlastX LINE_RTE-X 467261 467506 35 - . . scaffold394 TRF Tandem_Repeat 468751 468793 86 + . . scaffold394 TRF Tandem_Repeat 472605 472667 126 + . . scaffold394 TRF Tandem_Repeat 475287 475469 313 + . . scaffold394 TRF Tandem_Repeat 476854 476937 141 + . . scaffold394 GLEAN mRNA 483778 486726 0.57326 - . ID=CGI_10022087; scaffold394 GLEAN promoter 486727 487726 0.57326 - . ID=CGI_10022087; scaffold394 GLEAN mRNA 488659 515899 0.813951 - . ID=CGI_10022088; scaffold394 TRF Tandem_Repeat 492553 492604 95 + . . scaffold394 TRF Tandem_Repeat 492814 492853 80 + . . scaffold394 WUBlastX DNA_Harbinger 492981 493127 62 + . . scaffold394 WUBlastX DNA_Harbinger 493368 493526 48 + . . scaffold394 WUBlastX DNA_Harbinger 493410 493547 42 + . . scaffold394 GLEAN promoter 515900 516899 0.813951 - . ID=CGI_10022088; scaffold394 GLEAN promoter 517630 518629 1 + . ID=CGI_10022089; scaffold394 GLEAN mRNA 518630 528747 1 + . ID=CGI_10022089; scaffold394 TRF Tandem_Repeat 520139 520172 50 + . . scaffold394 GLEAN mRNA 529431 538530 0.999192 - . ID=CGI_10022090; scaffold394 TRF Tandem_Repeat 537588 537666 158 + . . scaffold394 GLEAN promoter 538531 539530 0.999192 - . ID=CGI_10022090; scaffold394 GLEAN mRNA 538723 541431 0.999958 - . ID=CGI_10022091; scaffold394 TRF Tandem_Repeat 539449 539824 479 + . . scaffold394 TRF Tandem_Repeat 539449 540381 796 + . . scaffold394 TRF Tandem_Repeat 540005 540381 388 + . . scaffold394 TRF Tandem_Repeat 540077 540381 396 + . . scaffold394 GLEAN promoter 541122 542121 1 + . ID=CGI_10022092; scaffold394 GLEAN promoter 541432 542431 0.999958 - . ID=CGI_10022091; scaffold394 GLEAN mRNA 542122 543368 1 + . ID=CGI_10022092; scaffold394 TRF Tandem_Repeat 542961 543018 98 + . . scaffold394 TRF Tandem_Repeat 545196 545253 116 + . . scaffold394 GLEAN promoter 548658 549657 0.811205 + . ID=CGI_10022093; scaffold394 GLEAN mRNA 549658 560561 0.811205 + . ID=CGI_10022093; scaffold394 WUBlastX LTR_Gypsy 554161 554403 25 + . . scaffold394 WUBlastX DNA_hAT-hATw 559240 559449 36 + . . scaffold394 GLEAN promoter 562117 563116 0.999676 + . ID=CGI_10022094; scaffold394 GLEAN mRNA 563117 575921 0.999676 + . ID=CGI_10022094; scaffold394 TRF Tandem_Repeat 569312 569912 844 + . . scaffold394 TRF Tandem_Repeat 578651 579050 457 + . . scaffold394 TRF Tandem_Repeat 579286 579607 431 + . . scaffold394 TRF Tandem_Repeat 579633 579690 116 + . . scaffold394 TRF Tandem_Repeat 579713 581033 1764 + . . scaffold394 TRF Tandem_Repeat 579723 581032 1638 + . . scaffold394 TRF Tandem_Repeat 579723 581010 1691 + . . scaffold394 GLEAN mRNA 582276 594659 0.749146 - . ID=CGI_10022095; scaffold394 TRF Tandem_Repeat 584406 586130 2500 + . . scaffold394 GLEAN promoter 594660 595659 0.749146 - . ID=CGI_10022095; scaffold394 GLEAN mRNA 596523 608766 0.999949 - . ID=CGI_10022096; scaffold394 TRF Tandem_Repeat 604827 604868 59 + . . scaffold394 TRF Tandem_Repeat 605647 606449 896 + . . scaffold394 GLEAN promoter 608767 609766 0.999949 - . ID=CGI_10022096; scaffold394 WUBlastX LINE_CR1 623337 623459 22 + . . scaffold394 WUBlastX LINE_L2 623358 623501 72 + . . scaffold394 WUBlastX LINE_L2 623509 623970 148 + . . scaffold394 GLEAN promoter 623989 624988 0.694208 + . ID=CGI_10022097; scaffold394 GLEAN mRNA 624989 626239 0.694208 + . ID=CGI_10022097; scaffold394 GLEAN promoter 629182 630181 1 + . ID=CGI_10022098; scaffold394 TRF Tandem_Repeat 629458 629497 71 + . . scaffold394 GLEAN mRNA 630182 634077 1 + . ID=CGI_10022098; scaffold394 TRF Tandem_Repeat 635694 635737 72 + . . scaffold394 TRF Tandem_Repeat 637178 637309 70 + . . scaffold394 TRF Tandem_Repeat 637225 637354 102 + . . scaffold394 GLEAN promoter 638714 639713 0.59339 + . ID=CGI_10022099; scaffold394 GLEAN mRNA 639714 643674 0.59339 + . ID=CGI_10022099; scaffold394 GLEAN promoter 644434 645433 0.99966 + . ID=CGI_10022100; scaffold394 TRF Tandem_Repeat 644822 644915 125 + . . scaffold394 TRF Tandem_Repeat 644962 645050 128 + . . scaffold394 GLEAN mRNA 645434 646419 0.99966 + . ID=CGI_10022100; scaffold394 GLEAN promoter 646699 647698 0.52773 + . ID=CGI_10022101; scaffold394 TRF Tandem_Repeat 647366 647415 100 + . . scaffold394 GLEAN mRNA 647699 656790 0.52773 + . ID=CGI_10022101; scaffold394 GLEAN mRNA 658520 663860 1 - . ID=CGI_10022102; scaffold394 GLEAN promoter 663861 664860 1 - . ID=CGI_10022102; scaffold394 GLEAN promoter 667867 668866 1 + . ID=CGI_10022103; scaffold394 GLEAN mRNA 668867 671470 1 + . ID=CGI_10022103; scaffold394 TRF Tandem_Repeat 672378 672439 124 + . . scaffold394 TRF Tandem_Repeat 673202 673261 120 + . . scaffold394 TRF Tandem_Repeat 676678 678389 2527 + . . scaffold394 TRF Tandem_Repeat 676678 677995 2015 + . . scaffold394 TRF Tandem_Repeat 676682 678389 2546 + . . scaffold394 TRF Tandem_Repeat 677920 678337 252 + . . scaffold394 TRF Tandem_Repeat 677994 678389 636 + . . scaffold394 GLEAN promoter 678397 679396 0.593391 + . ID=CGI_10022104; scaffold394 GLEAN mRNA 679397 680972 0.593391 + . ID=CGI_10022104; scaffold394 GLEAN promoter 688562 689561 0.584925 + . ID=CGI_10022105; scaffold394 GLEAN mRNA 689562 701121 0.584925 + . ID=CGI_10022105; scaffold394 TRF Tandem_Repeat 695593 695663 142 + . . scaffold394 GLEAN mRNA 704194 706371 0.998504 - . ID=CGI_10022106; scaffold394 GLEAN promoter 706372 707371 0.998504 - . ID=CGI_10022106; scaffold394 GLEAN mRNA 713253 725898 0.988889 - . ID=CGI_10022107; scaffold394 TRF Tandem_Repeat 714005 714156 160 + . . scaffold394 TRF Tandem_Repeat 714751 714997 404 + . . scaffold394 GLEAN promoter 725899 726898 0.988889 - . ID=CGI_10022107; scaffold39410 GLEAN promoter 4402 5401 1 + . ID=CGI_10003369; scaffold39410 GLEAN mRNA 5402 16312 1 + . ID=CGI_10003369; scaffold39410 GLEAN mRNA 57886 59065 0.999973 - . ID=CGI_10003370; scaffold39410 GLEAN promoter 59066 60065 0.999973 - . ID=CGI_10003370; scaffold39412 TRF Tandem_Repeat 17623 18065 535 + . . scaffold39412 WUBlastX LINE_RTE-X 22799 23173 116 - . . scaffold39412 WUBlastX LINE_RTE-X 22886 23230 77 - . . scaffold39412 WUBlastX LINE_RTE-X 23313 23786 240 - . . scaffold39412 WUBlastX LINE_RTE-X 23801 24472 368 - . . scaffold39412 WUBlastX LINE_Jockey 24068 24568 61 - . . scaffold39412 WUBlastX LINE_L2 25309 25353 22 - . . scaffold39412 TRF Tandem_Repeat 25479 25508 53 + . . scaffold39412 GLEAN mRNA 27723 28352 0.946175 - . ID=CGI_10003317; scaffold39412 GLEAN promoter 28353 29352 0.946175 - . ID=CGI_10003317; scaffold39412 GLEAN promoter 29307 30306 0.154568 + . ID=CGI_10003318; scaffold39412 GLEAN mRNA 30307 41307 0.154568 + . ID=CGI_10003318; scaffold39412 GLEAN mRNA 31299 46996 0.801079 - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 33629 34458 1118 + . . scaffold39412 TRF Tandem_Repeat 33629 34458 1139 + . . scaffold39412 TRF Tandem_Repeat 37209 37768 666 + . . scaffold39412 TRF Tandem_Repeat 37211 37768 644 + . . scaffold39412 TRF Tandem_Repeat 37218 37431 268 + . . scaffold39412 TRF Tandem_Repeat 37450 37768 475 + . . scaffold39412 GLEAN promoter 45889 46888 0.999949 + . ID=CGI_10003320; scaffold39412 GLEAN mRNA 46889 47897 0.999949 + . ID=CGI_10003320; scaffold39412 GLEAN promoter 46997 47996 0.801079 - . ID=CGI_10003319; scaffold39412 TRF Tandem_Repeat 47313 47347 70 + . . scaffold39412 TRF Tandem_Repeat 47669 47725 105 + . . scaffold39412 GLEAN promoter 48051 49050 0.474518 + . ID=CGI_10003321; scaffold39412 GLEAN mRNA 49051 62310 0.474518 + . ID=CGI_10003321; scaffold39412 TRF Tandem_Repeat 58426 59409 1159 + . . scaffold39412 TRF Tandem_Repeat 58430 59409 1167 + . . scaffold39412 GLEAN promoter 63851 64850 0.999629 + . ID=CGI_10003322; scaffold39412 GLEAN mRNA 64851 68929 0.999629 + . ID=CGI_10003322; scaffold39412 TRF Tandem_Repeat 65992 66037 67 + . . scaffold39412 TRF Tandem_Repeat 69549 69600 68 + . . scaffold39424 TRF Tandem_Repeat 539 771 265 + . . scaffold39424 WUBlastX LINE_RTE-X 38723 39004 120 + . . scaffold39424 WUBlastX LINE_I 39243 39758 68 + . . scaffold39424 WUBlastX LINE_RTE-X 39345 40682 68 + . . scaffold39424 WUBlastX LINE_RTE-X 39369 40229 120 + . . scaffold39424 WUBlastX LINE_RTE-X 40479 40796 20 + . . scaffold39424 WUBlastX LINE_RTE-X 40551 40736 40 + . . scaffold39424 TRF Tandem_Repeat 44620 44656 74 + . . scaffold39424 GLEAN promoter 53269 54268 0.964698 + . ID=CGI_10003364; scaffold39424 TRF Tandem_Repeat 53627 53961 582 + . . scaffold39424 GLEAN mRNA 54269 54733 0.964698 + . ID=CGI_10003364; scaffold39424 WUBlastX DNA_IS4EU 57987 58244 29 + . . scaffold39424 WUBlastX DNA_IS4EU 58988 60124 549 + . . scaffold39424 WUBlastX DNA_Kolobok-IS4 60462 61169 155 - . . scaffold39424 WUBlastX DNA_IS4EU 60468 61319 151 - . . scaffold39424 WUBlastX DNA_IS4EU 60468 61559 128 - . . scaffold39424 WUBlastX DNA_IS4EU 60576 60962 190 - . . scaffold39424 WUBlastX DNA_IS4EU 61299 61619 54 - . . scaffold39424 WUBlastX DNA_IS4EU 62089 62367 51 - . . scaffold39424 WUBlastX DNA_Kolobok-IS4 62098 62529 22 - . . scaffold39424 GLEAN mRNA 63105 70845 0.544852 - . ID=CGI_10003365; scaffold39424 GLEAN promoter 70846 71299 0.544852 - . ID=CGI_10003365; scaffold39464 TRF Tandem_Repeat 6175 6958 1158 + . . scaffold39464 WUBlastX LTR_DIRS 7606 8520 415 - . . scaffold39464 WUBlastX LTR_DIRS 8892 10943 918 - . . scaffold39464 WUBlastX LTR_DIRS 10897 11418 94 - . . scaffold39464 GLEAN promoter 18169 19168 0.583906 + . ID=CGI_10003386; scaffold39464 GLEAN mRNA 19169 19932 0.583906 + . ID=CGI_10003386; scaffold39464 TRF Tandem_Repeat 19604 19715 163 + . . scaffold39464 WUBlastX RC_Helitron 19940 21601 300 + . . scaffold39464 WUBlastX DNA_Helitron 20483 22588 738 + . . scaffold39464 WUBlastX RC_Helitron 21296 25432 2603 + . . scaffold39464 WUBlastX RC_Helitron 25428 27080 857 + . . scaffold39464 WUBlastX LINE_L2 26322 27260 70 + . . scaffold39464 TRF Tandem_Repeat 29154 29189 54 + . . scaffold39464 TRF Tandem_Repeat 29198 29993 1457 + . . scaffold39464 GLEAN mRNA 33607 57080 0.275021 - . ID=CGI_10003387; scaffold39464 WUBlastX DNA_Sola 37825 38031 101 + . . scaffold39464 TRF Tandem_Repeat 39219 39245 54 + . . scaffold39464 TRF Tandem_Repeat 47989 48532 822 + . . scaffold39464 GLEAN promoter 57081 58080 0.275021 - . ID=CGI_10003387; scaffold39470 TRF Tandem_Repeat 2081 2157 66 + . . scaffold39470 TRF Tandem_Repeat 14490 14524 70 + . . scaffold39470 TRF Tandem_Repeat 14628 14666 78 + . . scaffold39470 TRF Tandem_Repeat 18071 18106 58 + . . scaffold39470 GLEAN mRNA 18519 32880 0.998788 - . ID=CGI_10003379; scaffold39470 WUBlastX LTR_Ngaro 20254 21159 320 - . . scaffold39470 WUBlastX LTR_Ngaro 21171 22466 948 - . . scaffold39470 WUBlastX LTR_Ngaro 21186 22754 783 - . . scaffold39470 WUBlastX LTR_Ngaro 23043 24047 24 - . . scaffold39470 GLEAN promoter 32881 33880 0.998788 - . ID=CGI_10003379; scaffold39470 TRF Tandem_Repeat 34705 35027 517 + . . scaffold39470 GLEAN promoter 36603 37602 0.681651 + . ID=CGI_10003380; scaffold39470 GLEAN mRNA 37603 51823 0.681651 + . ID=CGI_10003380; scaffold39470 WUBlastX LINE_L2 44078 44596 49 + . . scaffold39470 WUBlastX LINE_CR1 44219 47458 2057 + . . scaffold39470 WUBlastX LINE_DRE 47414 47485 23 + . . scaffold39470 GLEAN promoter 52022 53021 0.267827 + . ID=CGI_10003381; scaffold39470 GLEAN mRNA 53022 68585 0.267827 + . ID=CGI_10003381; scaffold39470 TRF Tandem_Repeat 68183 68385 138 + . . scaffold39472 TRF Tandem_Repeat 8925 8978 108 + . . scaffold39472 TRF Tandem_Repeat 16671 16813 178 + . . scaffold39472 TRF Tandem_Repeat 26701 26734 61 + . . scaffold39472 WUBlastX DNA_Sola 30217 30357 57 - . . scaffold39472 GLEAN promoter 35257 36256 0.862936 + . ID=CGI_10003397; scaffold39472 GLEAN mRNA 36257 64378 0.862936 + . ID=CGI_10003397; scaffold39472 WUBlastX LTR_DIRS 37385 37957 54 + . . scaffold39472 WUBlastX LTR_DIRS 38040 38555 320 + . . scaffold39472 WUBlastX LTR_DIRS 38525 38902 186 + . . scaffold39472 WUBlastX LTR_DIRS 38899 39846 118 + . . scaffold39472 WUBlastX LTR_DIRS 39921 40076 32 + . . scaffold39472 WUBlastX LTR_DIRS 40113 40397 154 + . . scaffold39472 TRF Tandem_Repeat 44319 44364 65 + . . scaffold39472 TRF Tandem_Repeat 44323 44362 62 + . . scaffold39472 TRF Tandem_Repeat 53097 53133 65 + . . scaffold39472 TRF Tandem_Repeat 53097 53136 53 + . . scaffold39476 TRF Tandem_Repeat 796 939 87 + . . scaffold39476 WUBlastX LINE_Penelope 36244 36453 59 - . . scaffold39476 WUBlastX LINE_Penelope 36280 36543 101 - . . scaffold39476 WUBlastX LINE_Penelope 36331 36600 79 - . . scaffold39476 WUBlastX LINE_Penelope 36559 36729 28 + . . scaffold39476 TRF Tandem_Repeat 39327 39428 82 + . . scaffold39476 TRF Tandem_Repeat 42889 42930 68 + . . scaffold39476 TRF Tandem_Repeat 42890 42927 51 + . . scaffold39476 TRF Tandem_Repeat 44336 45348 1322 + . . scaffold39476 WUBlastX LTR_DIRS 45896 46546 54 + . . scaffold39476 WUBlastX LTR_DIRS 46016 46546 276 + . . scaffold39476 WUBlastX LTR_DIRS 46555 46728 90 + . . scaffold39476 WUBlastX LTR_DIRS 46628 47848 176 + . . scaffold39476 WUBlastX LTR_DIRS 48289 48735 146 + . . scaffold39476 GLEAN promoter 48505 49504 1 + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_DIRS 48672 49208 229 + . . scaffold39476 GLEAN mRNA 49505 51682 1 + . ID=CGI_10002876; scaffold39476 WUBlastX LTR_Gypsy 49629 50147 86 + . . scaffold39476 WUBlastX LTR_Gypsy 49869 50138 103 + . . scaffold39476 WUBlastX LTR_Gypsy 49890 50210 67 + . . scaffold39476 WUBlastX LTR_Gypsy 49914 50147 119 + . . scaffold39476 WUBlastX LTR_Gypsy 50125 50475 20 + . . scaffold39476 WUBlastX LTR_Gypsy 50125 50358 35 + . . scaffold39476 WUBlastX LTR_Ngaro 52111 52767 143 + . . scaffold39476 WUBlastX LTR_Ngaro 52836 54179 575 + . . scaffold39476 WUBlastX LTR_Ngaro 53115 54149 678 + . . scaffold39476 WUBlastX LTR_Ngaro 54149 54223 50 + . . scaffold39482 WUBlastX DNA_PiggyBac 2 187 51 + . . scaffold39482 WUBlastX DNA_PiggyBac 53 199 80 + . . scaffold39482 GLEAN mRNA 342 10800 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Zator 3975 6071 1258 + . . scaffold39482 WUBlastX DNA_Zator 6965 7123 93 + . . scaffold39482 WUBlastX DNA_Zator 7224 7721 139 + . . scaffold39482 GLEAN promoter 10801 11800 0.374169 - . ID=CGI_10003389; scaffold39482 WUBlastX DNA_Maverick 14085 14315 132 - . . scaffold39482 TRF Tandem_Repeat 14362 14399 60 + . . scaffold39482 WUBlastX DNA_Kolobok-IS4 41477 41614 46 + . . scaffold39482 TRF Tandem_Repeat 41736 41782 76 + . . scaffold39482 WUBlastX DNA_Kolobok-IS4 41948 42037 39 + . . scaffold39482 TRF Tandem_Repeat 43105 43195 103 + . . scaffold39482 TRF Tandem_Repeat 43108 43208 100 + . . scaffold39482 TRF Tandem_Repeat 43124 43208 77 + . . scaffold39482 WUBlastX LTR_Pao 46140 46613 43 + . . scaffold39482 WUBlastX LTR_Pao 46739 47647 286 + . . scaffold39482 WUBlastX LTR_Pao 47021 47617 290 + . . scaffold39482 WUBlastX RC_Helitron 47937 48584 115 - . . scaffold39482 TRF Tandem_Repeat 70904 71541 883 + . . scaffold39482 TRF Tandem_Repeat 72135 72168 68 + . . scaffold39488 GLEAN promoter 6502 7501 0.998338 + . ID=CGI_10003382; scaffold39488 GLEAN mRNA 7502 16862 0.998338 + . ID=CGI_10003382; scaffold39488 GLEAN promoter 17272 18271 1 + . ID=CGI_10003383; scaffold39488 GLEAN mRNA 18272 19625 1 + . ID=CGI_10003383; scaffold39488 GLEAN promoter 39493 40492 0.984167 + . ID=CGI_10003384; scaffold39488 GLEAN mRNA 40493 51060 0.984167 + . ID=CGI_10003384; scaffold39488 GLEAN mRNA 59693 70914 0.406498 - . ID=CGI_10003385; scaffold39488 GLEAN promoter 70915 71914 0.406498 - . ID=CGI_10003385; scaffold395 TRF Tandem_Repeat 5407 5471 130 + . . scaffold395 TRF Tandem_Repeat 8878 8918 55 + . . scaffold395 WUBlastX LINE_Penelope 16370 16930 55 - . . scaffold395 WUBlastX LINE_Penelope 16550 16939 65 - . . scaffold395 WUBlastX DNA_TcMar-Tc1 19239 19373 20 + . . scaffold395 WUBlastX DNA_TcMar-Tc1 19481 19816 153 + . . scaffold395 WUBlastX DNA_TcMar-Tc1 19481 19894 128 + . . scaffold395 WUBlastX DNA_TcMar-Tc1 19481 19978 92 + . . scaffold395 WUBlastX DNA_TcMar-Tc1 19842 20162 74 + . . scaffold395 WUBlastX LINE_Penelope 20858 21067 56 + . . scaffold395 TRF Tandem_Repeat 36692 36782 146 + . . scaffold395 TRF Tandem_Repeat 36748 36837 99 + . . scaffold395 TRF Tandem_Repeat 38417 38523 142 + . . scaffold395 GLEAN mRNA 39383 43639 0.487354 - . ID=CGI_10013967; scaffold395 GLEAN promoter 43640 44639 0.487354 - . ID=CGI_10013967; scaffold395 TRF Tandem_Repeat 43817 43850 68 + . . scaffold395 TRF Tandem_Repeat 46081 46151 126 + . . scaffold395 WUBlastX LTR_Gypsy 48923 49204 189 + . . scaffold395 WUBlastX LTR_Gypsy 48929 49273 76 + . . scaffold395 WUBlastX LTR_Gypsy 49116 49376 74 + . . scaffold395 WUBlastX LTR_Gypsy 49312 49452 65 + . . scaffold395 WUBlastX LTR_Gypsy 49476 50381 192 + . . scaffold395 WUBlastX LTR_Gypsy 49752 50366 268 + . . scaffold395 WUBlastX LTR_Gypsy 50341 51135 352 + . . scaffold395 WUBlastX LTR_Gypsy 51131 51283 60 + . . scaffold395 WUBlastX LTR_Gypsy 51277 51885 46 + . . scaffold395 WUBlastX LTR_Gypsy 51420 51728 133 + . . scaffold395 WUBlastX LTR_Gypsy 51429 51968 109 + . . scaffold395 WUBlastX LTR_Gypsy-Troyk 51985 52065 26 + . . scaffold395 WUBlastX LTR_Gypsy 52000 52122 59 + . . scaffold395 WUBlastX LTR_Gypsy 52130 52456 155 + . . scaffold395 WUBlastX LTR_Gypsy-Troyk 52130 52780 140 + . . scaffold395 WUBlastX LTR_Gypsy-Troyk 52462 52914 57 + . . scaffold395 WUBlastX LTR_Gypsy-Troyk 53744 53989 58 + . . scaffold395 TRF Tandem_Repeat 68894 69654 785 + . . scaffold395 GLEAN mRNA 79122 81152 0.999953 - . ID=CGI_10013968; scaffold395 GLEAN promoter 81153 82152 0.999953 - . ID=CGI_10013968; scaffold395 TRF Tandem_Repeat 83856 84346 727 + . . scaffold395 GLEAN promoter 84082 85081 0.998176 + . ID=CGI_10013969; scaffold395 TRF Tandem_Repeat 84905 85006 82 + . . scaffold395 TRF Tandem_Repeat 84905 85039 72 + . . scaffold395 GLEAN mRNA 85082 89781 0.998176 + . ID=CGI_10013969; scaffold395 TRF Tandem_Repeat 85648 87325 2041 + . . scaffold395 TRF Tandem_Repeat 85648 87371 2300 + . . scaffold395 WUBlastX LINE_R1 88649 88789 20 + . . scaffold395 GLEAN promoter 88812 89811 0.748632 + . ID=CGI_10013970; scaffold395 GLEAN mRNA 89812 101730 0.748632 + . ID=CGI_10013970; scaffold395 TRF Tandem_Repeat 90132 90382 274 + . . scaffold395 TRF Tandem_Repeat 90144 90373 230 + . . scaffold395 TRF Tandem_Repeat 99448 99737 514 + . . scaffold395 TRF Tandem_Repeat 101232 101393 279 + . . scaffold395 TRF Tandem_Repeat 102798 102842 90 + . . scaffold395 TRF Tandem_Repeat 106493 106542 66 + . . scaffold395 TRF Tandem_Repeat 107521 108203 1061 + . . scaffold395 TRF Tandem_Repeat 114782 115796 1055 + . . scaffold395 TRF Tandem_Repeat 114782 115795 1064 + . . scaffold395 TRF Tandem_Repeat 114782 115756 1242 + . . scaffold395 TRF Tandem_Repeat 115874 116099 407 + . . scaffold395 GLEAN promoter 117064 118063 0.999661 + . ID=CGI_10013971; scaffold395 GLEAN mRNA 118064 119902 0.999661 + . ID=CGI_10013971; scaffold395 WUBlastX LINE_RTE-X 122088 122381 54 + . . scaffold395 WUBlastX LINE_RTE-X 122097 122342 61 + . . scaffold395 TRF Tandem_Repeat 123056 123105 66 + . . scaffold395 TRF Tandem_Repeat 123765 124596 1314 + . . scaffold395 TRF Tandem_Repeat 126308 126629 365 + . . scaffold395 TRF Tandem_Repeat 131847 131883 74 + . . scaffold395 GLEAN promoter 132585 133584 1 + . ID=CGI_10013972; scaffold395 GLEAN mRNA 133585 136967 1 + . ID=CGI_10013972; scaffold395 TRF Tandem_Repeat 139888 140018 112 + . . scaffold395 TRF Tandem_Repeat 139902 140081 124 + . . scaffold395 TRF Tandem_Repeat 139922 140036 90 + . . scaffold395 GLEAN promoter 143753 144752 0.999735 + . ID=CGI_10013973; scaffold395 TRF Tandem_Repeat 144190 144324 98 + . . scaffold395 TRF Tandem_Repeat 144208 144338 112 + . . scaffold395 GLEAN mRNA 144753 146801 0.999735 + . ID=CGI_10013973; scaffold395 TRF Tandem_Repeat 145101 145149 89 + . . scaffold395 GLEAN promoter 147247 148246 1 + . ID=CGI_10013974; scaffold395 GLEAN mRNA 148247 151438 1 + . ID=CGI_10013974; scaffold395 TRF Tandem_Repeat 152205 152248 88 + . . scaffold395 GLEAN promoter 153133 154132 1 + . ID=CGI_10013975; scaffold395 GLEAN mRNA 154133 161173 1 + . ID=CGI_10013975; scaffold395 TRF Tandem_Repeat 156936 157920 1346 + . . scaffold395 TRF Tandem_Repeat 156936 157920 1411 + . . scaffold395 GLEAN mRNA 162060 165171 0.909167 - . ID=CGI_10013976; scaffold395 GLEAN promoter 165172 166171 0.909167 - . ID=CGI_10013976; scaffold395 GLEAN promoter 165343 166342 0.937847 + . ID=CGI_10013977; scaffold395 GLEAN mRNA 166343 179904 0.937847 + . ID=CGI_10013977; scaffold395 TRF Tandem_Repeat 167908 168385 119 + . . scaffold395 TRF Tandem_Repeat 167979 168385 454 + . . scaffold395 TRF Tandem_Repeat 168004 168385 445 + . . scaffold395 WUBlastX LTR_ERVK 172147 172257 58 + . . scaffold395 TRF Tandem_Repeat 181593 181627 70 + . . scaffold395 GLEAN promoter 182918 183917 0.999674 + . ID=CGI_10013978; scaffold395 GLEAN mRNA 183918 205393 0.999674 + . ID=CGI_10013978; scaffold395 TRF Tandem_Repeat 187158 188355 2369 + . . scaffold395 TRF Tandem_Repeat 189088 189544 709 + . . scaffold395 TRF Tandem_Repeat 189699 189762 58 + . . scaffold395 TRF Tandem_Repeat 190459 190604 107 + . . scaffold395 TRF Tandem_Repeat 191581 191673 107 + . . scaffold395 TRF Tandem_Repeat 192826 193601 1160 + . . scaffold395 TRF Tandem_Repeat 200404 201092 924 + . . scaffold395 TRF Tandem_Repeat 202780 203084 583 + . . scaffold395 GLEAN mRNA 206952 212578 0.843136 - . ID=CGI_10013979; scaffold395 GLEAN promoter 211818 212817 1 + . ID=CGI_10013980; scaffold395 GLEAN promoter 212579 213578 0.843136 - . ID=CGI_10013979; scaffold395 GLEAN mRNA 212818 215373 1 + . ID=CGI_10013980; scaffold395 TRF Tandem_Repeat 214586 214971 601 + . . scaffold395 TRF Tandem_Repeat 224898 225276 471 + . . scaffold395 TRF Tandem_Repeat 226582 226853 244 + . . scaffold395 TRF Tandem_Repeat 227339 227412 132 + . . scaffold395 TRF Tandem_Repeat 227633 227657 50 + . . scaffold395 WUBlastX LINE_RTE-X 229449 229907 91 - . . scaffold395 WUBlastX LINE_RTE-X 229542 230291 212 - . . scaffold395 WUBlastX LINE_CR1 229887 230375 31 - . . scaffold395 TRF Tandem_Repeat 230738 230848 62 + . . scaffold395 TRF Tandem_Repeat 230738 230848 53 + . . scaffold395 GLEAN promoter 231173 232172 0.586408 + . ID=CGI_10013981; scaffold395 GLEAN mRNA 232173 234191 0.586408 + . ID=CGI_10013981; scaffold395 TRF Tandem_Repeat 240869 240901 66 + . . scaffold395 TRF Tandem_Repeat 250565 250596 50 + . . scaffold395 TRF Tandem_Repeat 250869 252353 1568 + . . scaffold395 GLEAN mRNA 253710 266701 0.364372 - . ID=CGI_10013982; scaffold395 TRF Tandem_Repeat 258464 258556 150 + . . scaffold395 GLEAN promoter 266467 267466 0.999531 + . ID=CGI_10013983; scaffold395 GLEAN promoter 266702 267701 0.364372 - . ID=CGI_10013982; scaffold395 GLEAN mRNA 267467 268939 0.999531 + . ID=CGI_10013983; scaffold395 GLEAN promoter 276385 277384 0.695782 + . ID=CGI_10013984; scaffold395 GLEAN mRNA 277385 298348 0.695782 + . ID=CGI_10013984; scaffold395 GLEAN mRNA 299415 300913 0.999589 - . ID=CGI_10013985; scaffold395 GLEAN promoter 300914 301913 0.999589 - . ID=CGI_10013985; scaffold395 TRF Tandem_Repeat 302449 302924 673 + . . scaffold395 TRF Tandem_Repeat 302452 302924 640 + . . scaffold395 TRF Tandem_Repeat 303394 304043 1126 + . . scaffold395 GLEAN promoter 320463 321462 0.32577 + . ID=CGI_10013986; scaffold395 GLEAN mRNA 321463 334797 0.32577 + . ID=CGI_10013986; scaffold395 WUBlastX LINE_RTE-X 333936 334175 45 + . . scaffold395 TRF Tandem_Repeat 335238 335336 90 + . . scaffold395 TRF Tandem_Repeat 346059 346117 118 + . . scaffold395 TRF Tandem_Repeat 350031 350304 302 + . . scaffold395 TRF Tandem_Repeat 358458 358495 58 + . . scaffold395 WUBlastX LINE_L1-Tx1 360405 360518 42 - . . scaffold395 WUBlastX LINE_L1-Tx1 360520 360714 67 - . . scaffold395 WUBlastX LINE_L1-Tx1 360538 360834 29 - . . scaffold395 WUBlastX LINE_L1-Tx1 361236 361535 41 - . . scaffold395 WUBlastX LINE_L1-Tx1 361308 361448 62 - . . scaffold395 WUBlastX LINE_L1-Tx1 361365 361535 65 - . . scaffold395 WUBlastX LINE_L1 361368 361457 69 - . . scaffold39500 GLEAN mRNA 17296 18057 0.894626 - . ID=CGI_10003411; scaffold39500 GLEAN promoter 18058 19057 0.894626 - . ID=CGI_10003411; scaffold39500 WUBlastX LTR_Gypsy 18072 18914 208 - . . scaffold39500 WUBlastX LTR_Gypsy 18231 18971 236 - . . scaffold39500 WUBlastX LTR_Gypsy 18354 18935 266 - . . scaffold39500 WUBlastX LTR_Gypsy 18832 19524 273 - . . scaffold39500 WUBlastX LTR_Gypsy 18919 19503 377 - . . scaffold39500 WUBlastX LTR_Gypsy 19553 20287 174 - . . scaffold39500 WUBlastX LTR_Gypsy-Cigr 19790 20287 354 - . . scaffold39500 WUBlastX LTR_Gypsy 19928 20320 385 - . . scaffold39500 WUBlastX LTR_Gypsy-Cigr 20320 22122 826 - . . scaffold39500 WUBlastX LTR_Gypsy 21745 22296 44 - . . scaffold39500 WUBlastX LTR_Gypsy 21910 22161 65 - . . scaffold39500 WUBlastX LTR_Gypsy 22278 22739 32 - . . scaffold39500 WUBlastX LTR_Gypsy 22705 22977 73 - . . scaffold39500 WUBlastX LTR_Gypsy 22729 23250 57 - . . scaffold39500 TRF Tandem_Repeat 27219 27257 69 + . . scaffold39500 TRF Tandem_Repeat 53383 53445 126 + . . scaffold39500 TRF Tandem_Repeat 55267 55571 196 + . . scaffold39500 TRF Tandem_Repeat 72038 72088 52 + . . scaffold39508 TRF Tandem_Repeat 996 1077 155 + . . scaffold39508 WUBlastX LINE_L1-Tx1 3304 3759 21 - . . scaffold39508 WUBlastX LINE_L1-Tx1 3912 4427 76 - . . scaffold39508 WUBlastX LINE_L1-Tx1 3993 4448 101 - . . scaffold39508 WUBlastX LINE_L1-Tx1 4348 4509 22 - . . scaffold39508 WUBlastX LINE_L1 4515 4613 23 - . . scaffold39508 WUBlastX LINE_L1 4956 5477 116 - . . scaffold39508 WUBlastX LINE_L1-Tx1 5402 6055 222 - . . scaffold39508 WUBlastX LINE_L1-Tx1 5504 6268 290 - . . scaffold39508 WUBlastX LINE_L1-Tx1 6213 6542 25 - . . scaffold39508 WUBlastX LINE_L1-Tx1 6243 6470 47 - . . scaffold39508 WUBlastX LTR_Gypsy 6836 7012 47 - . . scaffold39508 WUBlastX LTR_Gypsy 6842 7072 23 - . . scaffold39508 TRF Tandem_Repeat 20950 20976 54 + . . scaffold39508 WUBlastX LTR_Pao 21301 21432 31 + . . scaffold39508 WUBlastX LTR_Pao 21462 21593 57 + . . scaffold39508 WUBlastX LTR_Gypsy 22047 22247 22 + . . scaffold39508 WUBlastX LTR_Gypsy 22497 22943 76 + . . scaffold39508 WUBlastX LTR_Gypsy 22575 22943 111 + . . scaffold39508 WUBlastX LTR_Gypsy 22713 22952 131 + . . scaffold39508 WUBlastX LTR_Gypsy 22776 22988 102 + . . scaffold39508 WUBlastX LTR_Gypsy-Cigr 22785 22943 137 + . . scaffold39508 TRF Tandem_Repeat 23396 23465 50 + . . scaffold39508 TRF Tandem_Repeat 23396 23448 52 + . . scaffold39508 TRF Tandem_Repeat 23405 23458 54 + . . scaffold39508 WUBlastX LTR_Gypsy 23875 23934 22 + . . scaffold39508 TRF Tandem_Repeat 25269 26063 1217 + . . scaffold39508 TRF Tandem_Repeat 38226 38282 114 + . . scaffold39508 WUBlastX LINE_RTE-X 39777 40436 305 + . . scaffold39508 WUBlastX LTR_Pao 48056 48232 102 + . . scaffold39508 WUBlastX LTR_Pao 48220 48303 27 + . . scaffold39508 WUBlastX LTR_Pao 48232 48270 27 + . . scaffold39508 WUBlastX LTR_Pao 48995 49030 20 + . . scaffold39508 WUBlastX LTR_Pao 49029 49292 180 + . . scaffold39508 WUBlastX LTR_Pao 49292 49384 20 + . . scaffold39508 WUBlastX LTR_Pao 49292 49360 24 + . . scaffold39508 GLEAN mRNA 55183 55917 0.593389 - . ID=CGI_10003398; scaffold39508 GLEAN promoter 55918 56917 0.593389 - . ID=CGI_10003398; scaffold39508 GLEAN mRNA 57288 57464 0.776624 - . ID=CGI_10003399; scaffold39508 GLEAN promoter 57465 58464 0.776624 - . ID=CGI_10003399; scaffold39508 TRF Tandem_Repeat 60442 60559 104 + . . scaffold39508 TRF Tandem_Repeat 66962 67013 95 + . . scaffold39508 TRF Tandem_Repeat 69523 69965 508 + . . scaffold39508 TRF Tandem_Repeat 69538 69955 436 + . . scaffold39508 TRF Tandem_Repeat 71986 72031 65 + . . scaffold39514 GLEAN promoter 691 1690 1 + . ID=CGI_10003250; scaffold39514 GLEAN mRNA 1691 10264 1 + . ID=CGI_10003250; scaffold39514 TRF Tandem_Repeat 4593 4708 130 + . . scaffold39514 TRF Tandem_Repeat 5844 5886 86 + . . scaffold39514 GLEAN mRNA 11702 12804 1 - . ID=CGI_10003251; scaffold39514 GLEAN promoter 12805 13804 1 - . ID=CGI_10003251; scaffold39514 TRF Tandem_Repeat 19813 19902 92 + . . scaffold39514 TRF Tandem_Repeat 19818 19904 92 + . . scaffold39514 GLEAN promoter 22686 23685 0.641274 + . ID=CGI_10003252; scaffold39514 GLEAN mRNA 23686 24390 0.641274 + . ID=CGI_10003252; scaffold39514 GLEAN mRNA 27069 32729 1 - . ID=CGI_10003253; scaffold39514 GLEAN promoter 32730 33729 1 - . ID=CGI_10003253; scaffold39514 WUBlastX DNA_Chapaev 41295 41438 28 + . . scaffold39514 GLEAN promoter 46257 47256 0.604104 + . ID=CGI_10003254; scaffold39514 GLEAN mRNA 47257 66671 0.604104 + . ID=CGI_10003254; scaffold39514 TRF Tandem_Repeat 67530 67578 73 + . . scaffold39514 TRF Tandem_Repeat 67536 67578 59 + . . scaffold39522 GLEAN promoter 1 329 0.885438 + . ID=CGI_10003390; scaffold39522 GLEAN mRNA 330 9704 0.885438 + . ID=CGI_10003390; scaffold39522 TRF Tandem_Repeat 5626 5687 106 + . . scaffold39522 TRF Tandem_Repeat 6327 6379 106 + . . scaffold39522 TRF Tandem_Repeat 6555 6607 106 + . . scaffold39522 WUBlastX DNA_TcMar-Tc1 12737 13333 41 + . . scaffold39522 TRF Tandem_Repeat 16512 16605 74 + . . scaffold39522 GLEAN promoter 18735 19734 0.999897 + . ID=CGI_10003391; scaffold39522 GLEAN mRNA 19735 26421 0.999897 + . ID=CGI_10003391; scaffold39522 TRF Tandem_Repeat 24461 24884 679 + . . scaffold39522 GLEAN promoter 26316 27315 0.654708 + . ID=CGI_10003392; scaffold39522 GLEAN mRNA 27316 33990 0.654708 + . ID=CGI_10003392; scaffold39522 TRF Tandem_Repeat 27773 27829 51 + . . scaffold39522 TRF Tandem_Repeat 29024 29078 51 + . . scaffold39522 TRF Tandem_Repeat 35379 37150 1868 + . . scaffold39522 TRF Tandem_Repeat 35744 36029 204 + . . scaffold39522 GLEAN promoter 41273 42272 0.867499 + . ID=CGI_10003393; scaffold39522 GLEAN mRNA 42273 45182 0.867499 + . ID=CGI_10003393; scaffold39522 GLEAN promoter 45930 46929 0.999998 + . ID=CGI_10003394; scaffold39522 GLEAN mRNA 46930 48627 0.999998 + . ID=CGI_10003394; scaffold39522 GLEAN mRNA 51364 60065 0.999619 - . ID=CGI_10003395; scaffold39522 GLEAN promoter 57959 58958 0.999675 + . ID=CGI_10003396; scaffold39522 GLEAN mRNA 58959 66352 0.999675 + . ID=CGI_10003396; scaffold39522 GLEAN promoter 60066 61065 0.999619 - . ID=CGI_10003395; scaffold39522 TRF Tandem_Repeat 61636 61838 381 + . . scaffold39524 GLEAN mRNA 1096 4586 1 - . ID=CGI_10003371; scaffold39524 GLEAN promoter 4587 5586 1 - . ID=CGI_10003371; scaffold39524 GLEAN mRNA 6248 18610 1 - . ID=CGI_10003372; scaffold39524 TRF Tandem_Repeat 7893 8211 392 + . . scaffold39524 TRF Tandem_Repeat 8629 8665 74 + . . scaffold39524 GLEAN promoter 18611 19610 1 - . ID=CGI_10003372; scaffold39524 GLEAN mRNA 20033 54544 0.835877 - . ID=CGI_10003373; scaffold39524 GLEAN promoter 54545 55544 0.835877 - . ID=CGI_10003373; scaffold39524 WUBlastX LINE_RTE-X 69586 71649 1021 + . . scaffold39526 GLEAN promoter 2807 3806 1 + . ID=CGI_10003400; scaffold39526 GLEAN mRNA 3807 29218 1 + . ID=CGI_10003400; scaffold39526 GLEAN promoter 32542 33541 0.544838 + . ID=CGI_10003401; scaffold39526 GLEAN mRNA 33542 38160 0.544838 + . ID=CGI_10003401; scaffold39526 TRF Tandem_Repeat 38466 38496 62 + . . scaffold39526 WUBlastX LTR_Gypsy 38923 42963 3166 - . . scaffold39526 TRF Tandem_Repeat 48052 48198 79 + . . scaffold39526 TRF Tandem_Repeat 48052 48180 102 + . . scaffold39526 TRF Tandem_Repeat 48129 48198 70 + . . scaffold39526 TRF Tandem_Repeat 58867 58945 54 + . . scaffold39526 WUBlastX LTR_Ngaro 59954 60274 34 - . . scaffold39526 WUBlastX LTR_Ngaro 60008 60943 187 - . . scaffold39526 WUBlastX LTR_Ngaro 60895 61701 414 - . . scaffold39526 WUBlastX LTR_Ngaro 61840 61914 24 - . . scaffold39526 WUBlastX LTR_Ngaro 61870 61944 29 - . . scaffold39526 WUBlastX LTR_Ngaro 61916 62446 72 - . . scaffold39526 WUBlastX LTR_Ngaro 61943 62233 90 - . . scaffold39526 WUBlastX LTR_Ngaro 61991 62233 100 - . . scaffold39526 WUBlastX LTR_Ngaro 62539 63204 64 - . . scaffold39526 WUBlastX LTR_Ngaro 62539 63021 80 - . . scaffold39526 TRF Tandem_Repeat 64772 64815 88 + . . scaffold39526 TRF Tandem_Repeat 66203 66244 75 + . . scaffold39526 TRF Tandem_Repeat 66242 66267 52 + . . scaffold39536 WUBlastX LINE_L1-Tx1 5703 6113 45 - . . scaffold39536 WUBlastX LINE_L1-Tx1 5802 6077 94 - . . scaffold39536 WUBlastX LINE_L1-Tx1 5883 6203 46 - . . scaffold39536 TRF Tandem_Repeat 20129 20155 54 + . . scaffold39536 TRF Tandem_Repeat 20618 20684 134 + . . scaffold39536 WUBlastX LINE_Penelope 20818 21234 52 - . . scaffold39536 WUBlastX LINE_Penelope 20890 21162 89 - . . scaffold39536 WUBlastX LINE_Penelope 20908 21228 82 - . . scaffold39536 GLEAN mRNA 22353 30478 0.981466 - . ID=CGI_10003409; scaffold39536 GLEAN promoter 30479 31478 0.981466 - . ID=CGI_10003409; scaffold39536 TRF Tandem_Repeat 31267 31373 196 + . . scaffold39536 TRF Tandem_Repeat 31409 31448 80 + . . scaffold39536 TRF Tandem_Repeat 37250 37291 84 + . . scaffold39536 TRF Tandem_Repeat 40181 40244 119 + . . scaffold39536 GLEAN mRNA 40650 69644 0.994991 - . ID=CGI_10003410; scaffold39536 TRF Tandem_Repeat 47471 47541 61 + . . scaffold39536 TRF Tandem_Repeat 49385 49461 131 + . . scaffold39536 TRF Tandem_Repeat 56059 56094 63 + . . scaffold39536 TRF Tandem_Repeat 60216 60259 88 + . . scaffold39536 GLEAN promoter 69645 70644 0.994991 - . ID=CGI_10003410; scaffold39536 WUBlastX LINE_RTE-X 71143 71361 104 + . . scaffold39536 WUBlastX LINE_RTE-X 71322 71957 45 + . . scaffold39536 WUBlastX LINE_RTE-X 71373 71855 80 + . . scaffold39536 WUBlastX LINE_RTE-X 71466 71804 218 + . . scaffold39570 GLEAN mRNA 17789 20066 0.920529 - . ID=CGI_10003430; scaffold39570 GLEAN promoter 20067 21066 0.920529 - . ID=CGI_10003430; scaffold39570 GLEAN mRNA 59887 66757 0.957718 - . ID=CGI_10003431; scaffold39570 GLEAN promoter 66758 67757 0.957718 - . ID=CGI_10003431; scaffold39570 GLEAN promoter 68227 69226 0.836015 + . ID=CGI_10003432; scaffold39570 GLEAN mRNA 69227 70579 0.836015 + . ID=CGI_10003432; scaffold39572 GLEAN mRNA 3216 8484 0.510894 - . ID=CGI_10003442; scaffold39572 GLEAN promoter 8485 9484 0.510894 - . ID=CGI_10003442; scaffold39572 TRF Tandem_Repeat 9698 9755 116 + . . scaffold39572 GLEAN mRNA 12150 13487 0.998765 - . ID=CGI_10003443; scaffold39572 GLEAN promoter 13488 14487 0.998765 - . ID=CGI_10003443; scaffold39572 TRF Tandem_Repeat 35481 35757 247 + . . scaffold39572 TRF Tandem_Repeat 35481 35827 170 + . . scaffold39572 TRF Tandem_Repeat 35826 35975 102 + . . scaffold39572 GLEAN mRNA 38196 39866 0.458498 - . ID=CGI_10003444; scaffold39572 GLEAN promoter 39867 40866 0.458498 - . ID=CGI_10003444; scaffold39572 TRF Tandem_Repeat 40740 40859 240 + . . scaffold39572 GLEAN mRNA 41510 42794 0.458646 - . ID=CGI_10003445; scaffold39572 GLEAN promoter 42795 43794 0.458646 - . ID=CGI_10003445; scaffold39572 GLEAN mRNA 44325 68809 0.785898 - . ID=CGI_10003446; scaffold39572 WUBlastX LINE_RTE-X 63089 63334 28 + . . scaffold39572 WUBlastX LINE_RTE-X 63095 63211 32 + . . scaffold39572 GLEAN promoter 68810 69809 0.785898 - . ID=CGI_10003446; scaffold39572 TRF Tandem_Repeat 69115 69156 84 + . . scaffold39572 TRF Tandem_Repeat 69571 69609 78 + . . scaffold39572 TRF Tandem_Repeat 69769 69817 98 + . . scaffold39572 GLEAN promoter 69924 70923 0.996819 + . ID=CGI_10003447; scaffold39572 GLEAN mRNA 70924 71955 0.996819 + . ID=CGI_10003447; scaffold39574 GLEAN promoter 1 291 1 + . ID=CGI_10003420; scaffold39574 GLEAN mRNA 292 1563 1 + . ID=CGI_10003420; scaffold39574 GLEAN mRNA 24121 24652 1 - . ID=CGI_10003421; scaffold39574 GLEAN promoter 24383 25382 0.932508 + . ID=CGI_10003422; scaffold39574 GLEAN promoter 24653 25652 1 - . ID=CGI_10003421; scaffold39574 GLEAN mRNA 25383 38672 0.932508 + . ID=CGI_10003422; scaffold39574 GLEAN mRNA 39498 46126 0.999415 - . ID=CGI_10003423; scaffold39574 GLEAN promoter 46127 47126 0.999415 - . ID=CGI_10003423; scaffold39574 GLEAN mRNA 48374 50587 0.672351 - . ID=CGI_10003424; scaffold39574 GLEAN promoter 50588 51587 0.672351 - . ID=CGI_10003424; scaffold39574 GLEAN promoter 60995 61994 0.702385 + . ID=CGI_10003425; scaffold39574 GLEAN mRNA 61995 73138 0.702385 + . ID=CGI_10003425; scaffold39574 GLEAN mRNA 66722 68540 1 - . ID=CGI_10003426; scaffold39574 GLEAN promoter 68541 69540 1 - . ID=CGI_10003426; scaffold39580 GLEAN promoter 1 575 0.77769 + . ID=CGI_10003416; scaffold39580 GLEAN mRNA 171 19549 0.542392 - . ID=CGI_10003415; scaffold39580 GLEAN mRNA 576 2226 0.77769 + . ID=CGI_10003416; scaffold39580 TRF Tandem_Repeat 5240 5293 90 + . . scaffold39580 TRF Tandem_Repeat 6740 6785 92 + . . scaffold39580 TRF Tandem_Repeat 11897 11958 81 + . . scaffold39580 GLEAN promoter 19550 20549 0.542392 - . ID=CGI_10003415; scaffold39580 TRF Tandem_Repeat 20070 20159 112 + . . scaffold39580 TRF Tandem_Repeat 21938 22074 91 + . . scaffold39580 TRF Tandem_Repeat 32454 32488 54 + . . scaffold39580 TRF Tandem_Repeat 46845 46932 167 + . . scaffold39580 TRF Tandem_Repeat 48862 48909 96 + . . scaffold39580 WUBlastX LINE_CR1-L2 55054 55230 58 + . . scaffold39580 GLEAN promoter 59073 60072 0.988583 + . ID=CGI_10003417; scaffold39580 GLEAN mRNA 60073 61977 0.988583 + . ID=CGI_10003417; scaffold39582 GLEAN promoter 3836 4835 0.999985 + . ID=CGI_10003448; scaffold39582 GLEAN mRNA 4836 21665 0.999985 + . ID=CGI_10003448; scaffold39582 TRF Tandem_Repeat 5113 5350 194 + . . scaffold39582 TRF Tandem_Repeat 16644 16838 238 + . . scaffold39582 TRF Tandem_Repeat 16746 16890 200 + . . scaffold39582 TRF Tandem_Repeat 16823 16887 70 + . . scaffold39582 TRF Tandem_Repeat 17214 17555 347 + . . scaffold39582 TRF Tandem_Repeat 17214 17599 336 + . . scaffold39582 TRF Tandem_Repeat 17216 17600 271 + . . scaffold39582 TRF Tandem_Repeat 17237 17600 364 + . . scaffold39582 TRF Tandem_Repeat 18633 20592 1999 + . . scaffold39582 TRF Tandem_Repeat 25647 25685 60 + . . scaffold39582 TRF Tandem_Repeat 34508 34556 91 + . . scaffold39582 TRF Tandem_Repeat 38508 38542 70 + . . scaffold39582 WUBlastX LINE_L1-Tx1 58883 59440 139 + . . scaffold39582 WUBlastX LINE_L1-Tx1 58970 59440 218 + . . scaffold39582 WUBlastX LINE_L1-Tx1 59434 60087 185 + . . scaffold39582 WUBlastX LINE_L1 60333 60902 65 + . . scaffold39582 WUBlastX LINE_L1-Tx1 60462 60941 170 + . . scaffold39582 WUBlastX LINE_L1-Tx1 60595 61191 131 + . . scaffold39582 WUBlastX LINE_L1-Tx1 60931 61305 71 + . . scaffold39582 WUBlastX LINE_L1-Tx1 60931 61380 48 + . . scaffold39582 TRF Tandem_Repeat 71378 71432 65 + . . scaffold39582 TRF Tandem_Repeat 71378 71422 74 + . . scaffold39592 GLEAN mRNA 544 4028 1 - . ID=CGI_10003433; scaffold39592 GLEAN promoter 3293 4292 0.441818 + . ID=CGI_10003434; scaffold39592 GLEAN promoter 4029 5028 1 - . ID=CGI_10003433; scaffold39592 GLEAN mRNA 4293 22531 0.441818 + . ID=CGI_10003434; scaffold39592 GLEAN promoter 22185 23184 0.962688 + . ID=CGI_10003435; scaffold39592 GLEAN mRNA 23185 29978 0.962688 + . ID=CGI_10003435; scaffold39592 WUBlastX LINE_L1-Tx1 42873 43397 70 - . . scaffold39592 WUBlastX LINE_L1-Tx1 43230 43391 82 - . . scaffold39592 WUBlastX LINE_L1-Tx1 43343 43501 30 - . . scaffold39592 WUBlastX LINE_L2 43628 43723 32 + . . scaffold39592 WUBlastX LINE_L2 43726 44562 499 + . . scaffold39592 WUBlastX LINE_L2 43735 44727 351 + . . scaffold39592 WUBlastX LINE_L2 44568 44864 152 + . . scaffold39592 TRF Tandem_Repeat 53388 53439 52 + . . scaffold39592 GLEAN mRNA 65919 73352 0.999998 - . ID=CGI_10003436; scaffold39592 TRF Tandem_Repeat 70502 70541 53 + . . scaffold39592 TRF Tandem_Repeat 72281 72309 58 + . . scaffold39592 TRF Tandem_Repeat 72309 72351 86 + . . scaffold39592 GLEAN promoter 73353 73492 0.999998 - . ID=CGI_10003436; scaffold39594 GLEAN promoter 1322 2321 1 + . ID=CGI_10003449; scaffold39594 TRF Tandem_Repeat 1583 1887 290 + . . scaffold39594 GLEAN mRNA 2322 7482 1 + . ID=CGI_10003449; scaffold39594 GLEAN promoter 16806 17805 0.999974 + . ID=CGI_10003450; scaffold39594 GLEAN mRNA 17806 18546 0.999974 + . ID=CGI_10003450; scaffold39594 TRF Tandem_Repeat 23844 23988 173 + . . scaffold39594 GLEAN mRNA 27513 27692 0.999372 - . ID=CGI_10003451; scaffold39594 GLEAN promoter 27693 28692 0.999372 - . ID=CGI_10003451; scaffold39594 TRF Tandem_Repeat 29744 29787 88 + . . scaffold39594 TRF Tandem_Repeat 31684 32154 420 + . . scaffold39594 TRF Tandem_Repeat 33784 33839 112 + . . scaffold39594 GLEAN mRNA 38645 39388 0.718891 - . ID=CGI_10003452; scaffold39594 GLEAN promoter 39389 40388 0.718891 - . ID=CGI_10003452; scaffold39594 WUBlastX LINE_CR1-L2 54351 54677 26 - . . scaffold39594 WUBlastX LINE_CR1-L2 54402 54677 99 - . . scaffold39594 TRF Tandem_Repeat 67677 68066 399 + . . scaffold39594 WUBlastX LINE_L2 68251 69186 24 + . . scaffold39594 WUBlastX LINE_L2 68407 69537 496 + . . scaffold39594 GLEAN mRNA 72114 73294 1 - . ID=CGI_10003453; scaffold39594 GLEAN promoter 73295 73695 1 - . ID=CGI_10003453; scaffold39598 WUBlastX LTR_Gypsy 1614 1838 61 - . . scaffold39598 WUBlastX LINE_L1-Tx1 11393 12664 31 - . . scaffold39598 WUBlastX LINE_L1 11549 11656 36 - . . scaffold39598 WUBlastX LINE_L1-Tx1 12074 12661 77 - . . scaffold39598 WUBlastX LINE_L1-Tx1 12670 13164 147 - . . scaffold39598 WUBlastX LINE_L1 12763 13497 21 - . . scaffold39598 WUBlastX LINE_L1-Tx1 12787 13191 172 - . . scaffold39598 WUBlastX DNA_Kolobok 26669 27289 204 + . . scaffold39598 WUBlastX DNA_Kolobok 27074 27613 38 + . . scaffold39598 WUBlastX DNA_Kolobok 27434 27613 54 + . . scaffold39598 WUBlastX DNA_Kolobok 27747 28019 78 + . . scaffold39598 WUBlastX DNA_Kolobok 28331 28522 56 + . . scaffold39598 WUBlastX DNA_Kolobok 28370 28492 73 + . . scaffold39598 WUBlastX DNA_Harbinger 32321 32857 221 - . . scaffold39598 WUBlastX DNA_Harbinger 32435 32857 325 - . . scaffold39598 WUBlastX DNA_Harbinger 32854 33321 300 - . . scaffold39598 TRF Tandem_Repeat 43803 43864 108 + . . scaffold396 GLEAN mRNA 14459 18195 0.996819 - . ID=CGI_10018092; scaffold396 GLEAN promoter 18196 19195 0.996819 - . ID=CGI_10018092; scaffold396 TRF Tandem_Repeat 19542 20335 1042 + . . scaffold396 GLEAN mRNA 23872 25221 1 - . ID=CGI_10018093; scaffold396 TRF Tandem_Repeat 23996 24173 284 + . . scaffold396 TRF Tandem_Repeat 23997 24173 354 + . . scaffold396 GLEAN promoter 25222 26221 1 - . ID=CGI_10018093; scaffold396 GLEAN promoter 46609 47608 0.479616 + . ID=CGI_10018094; scaffold396 GLEAN mRNA 47609 68913 0.479616 + . ID=CGI_10018094; scaffold396 TRF Tandem_Repeat 65362 65571 175 + . . scaffold396 TRF Tandem_Repeat 65398 65601 221 + . . scaffold396 WUBlastX RC_Helitron 69678 69905 76 + . . scaffold396 TRF Tandem_Repeat 70962 71085 176 + . . scaffold396 GLEAN mRNA 78830 79918 0.82852 - . ID=CGI_10018095; scaffold396 GLEAN promoter 79919 80918 0.82852 - . ID=CGI_10018095; scaffold396 TRF Tandem_Repeat 83128 83171 88 + . . scaffold396 TRF Tandem_Repeat 87036 87094 118 + . . scaffold396 TRF Tandem_Repeat 87094 87129 72 + . . scaffold396 GLEAN mRNA 101213 115873 0.582981 - . ID=CGI_10018096; scaffold396 GLEAN promoter 115874 116873 0.582981 - . ID=CGI_10018096; scaffold396 GLEAN promoter 118115 119114 1 + . ID=CGI_10018097; scaffold396 GLEAN mRNA 119115 125087 1 + . ID=CGI_10018097; scaffold396 WUBlastX LTR_ERV1 128125 128211 20 + . . scaffold396 WUBlastX LTR_Gypsy 128921 129211 143 + . . scaffold396 WUBlastX LTR_Gypsy 129026 129211 168 + . . scaffold396 WUBlastX LTR_Gypsy 129235 129738 339 + . . scaffold396 TRF Tandem_Repeat 129854 130657 1017 + . . scaffold396 WUBlastX DNA_Academ 132008 132319 137 + . . scaffold396 WUBlastX DNA_Academ 132232 132627 147 + . . scaffold396 GLEAN promoter 132558 133557 0.64028 + . ID=CGI_10018098; scaffold396 WUBlastX DNA_Academ 132678 133316 229 + . . scaffold396 WUBlastX DNA_Academ 133286 133483 87 + . . scaffold396 WUBlastX DNA_Academ 133483 134151 184 + . . scaffold396 GLEAN mRNA 133558 133911 0.64028 + . ID=CGI_10018098; scaffold396 GLEAN promoter 134948 135947 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LINE_RTE-X 135122 135274 118 - . . scaffold396 WUBlastX LINE_RTE-X 135268 135468 53 - . . scaffold396 WUBlastX LINE_RTE-X 135414 135632 81 - . . scaffold396 WUBlastX LINE_RTE-X 135498 135632 85 - . . scaffold396 GLEAN mRNA 135948 145670 0.499792 + . ID=CGI_10018099; scaffold396 WUBlastX LTR_Ngaro 140501 141364 364 - . . scaffold396 WUBlastX LTR_Ngaro 141886 142620 359 - . . scaffold396 WUBlastX LTR_Ngaro 142048 142851 247 - . . scaffold396 WUBlastX LTR_Ngaro 143418 143765 71 - . . scaffold396 WUBlastX LTR_Ngaro 143541 143732 82 - . . scaffold396 WUBlastX LTR_Ngaro 143749 144321 407 - . . scaffold396 WUBlastX LTR_Ngaro 144704 145048 134 - . . scaffold396 TRF Tandem_Repeat 168698 168740 86 + . . scaffold396 TRF Tandem_Repeat 171049 171089 64 + . . scaffold396 GLEAN mRNA 171916 174027 0.999997 - . ID=CGI_10018100; scaffold396 GLEAN promoter 174028 175027 0.999997 - . ID=CGI_10018100; scaffold396 GLEAN mRNA 174091 175614 0.999997 - . ID=CGI_10018101; scaffold396 GLEAN promoter 175615 176614 0.999997 - . ID=CGI_10018101; scaffold396 TRF Tandem_Repeat 179571 180252 992 + . . scaffold396 WUBlastX LTR_Gypsy 185008 185700 79 - . . scaffold396 WUBlastX LTR_Gypsy 185452 185781 58 - . . scaffold396 GLEAN mRNA 196799 208805 0.948886 - . ID=CGI_10018103; scaffold396 WUBlastX LINE_CR1 204347 204706 58 + . . scaffold396 WUBlastX LINE_RTE-X 204416 204760 137 + . . scaffold396 WUBlastX LINE_RTE-X 204431 204700 169 + . . scaffold396 WUBlastX LINE_RTE-BovB 204437 204826 36 + . . scaffold396 TRF Tandem_Repeat 207066 207147 164 + . . scaffold396 GLEAN promoter 208806 209805 0.948886 - . ID=CGI_10018103; scaffold396 WUBlastX LTR_Gypsy-Cigr 209342 209974 345 - . . scaffold396 WUBlastX LTR_Gypsy 209968 210066 66 - . . scaffold396 WUBlastX LTR_Gypsy 209992 211818 495 - . . scaffold396 WUBlastX LTR_Gypsy 210151 211638 928 - . . scaffold396 WUBlastX LTR_Gypsy 211643 212752 121 - . . scaffold396 WUBlastX LTR_Gypsy-Cigr 211643 212017 334 - . . scaffold396 WUBlastX LTR_Gypsy 211643 212140 211 - . . scaffold396 WUBlastX LTR_Gypsy 212516 213058 64 - . . scaffold396 WUBlastX LTR_Gypsy 212918 213688 165 - . . scaffold396 WUBlastX LTR_Gypsy-Cigr 213167 213703 192 - . . scaffold396 WUBlastX LTR_Gypsy 213389 213787 54 - . . scaffold396 GLEAN mRNA 238279 242601 0.931927 - . ID=CGI_10018105; scaffold396 GLEAN promoter 242602 243601 0.931927 - . ID=CGI_10018105; scaffold396 GLEAN promoter 242740 243739 0.999965 + . ID=CGI_10018106; scaffold396 GLEAN mRNA 243740 246333 0.999965 + . ID=CGI_10018106; scaffold396 TRF Tandem_Repeat 247194 247238 72 + . . scaffold396 TRF Tandem_Repeat 247443 248361 1310 + . . scaffold396 GLEAN mRNA 250066 253952 0.999661 - . ID=CGI_10018107; scaffold396 GLEAN promoter 253033 254032 0.862339 + . ID=CGI_10018108; scaffold396 GLEAN promoter 253953 254952 0.999661 - . ID=CGI_10018107; scaffold396 GLEAN mRNA 254033 257944 0.862339 + . ID=CGI_10018108; scaffold396 GLEAN promoter 260691 261690 0.862366 + . ID=CGI_10018109; scaffold396 GLEAN mRNA 261691 275659 0.862366 + . ID=CGI_10018109; scaffold396 GLEAN promoter 274893 275892 1 + . ID=CGI_10018110; scaffold396 TRF Tandem_Repeat 275023 275533 905 + . . scaffold396 GLEAN mRNA 275893 279020 1 + . ID=CGI_10018110; scaffold396 GLEAN promoter 280356 281355 0.642999 + . ID=CGI_10018111; scaffold396 GLEAN mRNA 281356 286153 0.642999 + . ID=CGI_10018111; scaffold396 TRF Tandem_Repeat 301071 301125 110 + . . scaffold396 GLEAN promoter 317459 318458 0.999527 + . ID=CGI_10018112; scaffold396 GLEAN mRNA 318459 335788 0.999527 + . ID=CGI_10018112; scaffold396 TRF Tandem_Repeat 321340 321417 156 + . . scaffold396 TRF Tandem_Repeat 325233 326107 711 + . . scaffold396 TRF Tandem_Repeat 338760 340119 1801 + . . scaffold396 WUBlastX LTR_Gypsy 347401 347457 26 + . . scaffold396 WUBlastX LTR_Gypsy 347712 347792 20 + . . scaffold396 WUBlastX LTR_Gypsy 347756 348475 84 + . . scaffold396 WUBlastX LTR_Gypsy 347876 348475 164 + . . scaffold396 GLEAN promoter 347954 348953 0.861188 + . ID=CGI_10018113; scaffold396 WUBlastX LTR_Gypsy 348131 348448 211 + . . scaffold396 WUBlastX LTR_Gypsy-Cigr 348182 348469 241 + . . scaffold396 WUBlastX LTR_Gypsy 348537 348602 22 + . . scaffold396 GLEAN mRNA 348954 360754 0.861188 + . ID=CGI_10018113; scaffold396 TRF Tandem_Repeat 360454 360513 84 + . . scaffold396 TRF Tandem_Repeat 364344 364472 100 + . . scaffold396 TRF Tandem_Repeat 364840 366424 1670 + . . scaffold396 TRF Tandem_Repeat 365893 365967 69 + . . scaffold396 TRF Tandem_Repeat 373634 373920 398 + . . scaffold396 GLEAN promoter 377056 378055 1 + . ID=CGI_10018114; scaffold396 GLEAN mRNA 378056 389251 1 + . ID=CGI_10018114; scaffold396 TRF Tandem_Repeat 381611 381663 106 + . . scaffold396 TRF Tandem_Repeat 384800 385240 496 + . . scaffold396 TRF Tandem_Repeat 384852 385240 471 + . . scaffold396 TRF Tandem_Repeat 385572 385911 409 + . . scaffold396 GLEAN mRNA 391733 404044 0.99999 - . ID=CGI_10018115; scaffold396 GLEAN promoter 403152 404151 0.999676 + . ID=CGI_10018116; scaffold396 GLEAN promoter 404045 405044 0.99999 - . ID=CGI_10018115; scaffold396 GLEAN mRNA 404152 407505 0.999676 + . ID=CGI_10018116; scaffold396 WUBlastX DNA_hAT 406021 407418 213 + . . scaffold396 GLEAN promoter 412436 413435 1 + . ID=CGI_10018117; scaffold396 GLEAN mRNA 413436 418730 1 + . ID=CGI_10018117; scaffold396 TRF Tandem_Repeat 420137 420246 57 + . . scaffold396 TRF Tandem_Repeat 424438 424487 100 + . . scaffold396 GLEAN mRNA 428651 440486 0.99999 - . ID=CGI_10018118; scaffold396 TRF Tandem_Repeat 431555 431598 88 + . . scaffold396 GLEAN promoter 439518 440517 0.998817 + . ID=CGI_10018119; scaffold396 GLEAN promoter 440487 441486 0.99999 - . ID=CGI_10018118; scaffold396 GLEAN mRNA 440518 445855 0.998817 + . ID=CGI_10018119; scaffold396 GLEAN mRNA 446841 449020 1 - . ID=CGI_10018120; scaffold396 GLEAN promoter 449021 450020 1 - . ID=CGI_10018120; scaffold396 TRF Tandem_Repeat 450633 450677 90 + . . scaffold396 GLEAN promoter 452305 453304 0.337862 + . ID=CGI_10018121; scaffold396 GLEAN mRNA 453305 466974 0.337862 + . ID=CGI_10018121; scaffold396 TRF Tandem_Repeat 454058 454123 132 + . . scaffold396 TRF Tandem_Repeat 457614 457663 75 + . . scaffold396 TRF Tandem_Repeat 462811 462869 111 + . . scaffold396 GLEAN promoter 466775 467774 0.999948 + . ID=CGI_10018122; scaffold396 GLEAN mRNA 467775 467939 0.999948 + . ID=CGI_10018122; scaffold396 WUBlastX DNA_Kolobok-IS4 470545 470748 59 + . . scaffold396 GLEAN promoter 475416 476415 0.999995 + . ID=CGI_10018123; scaffold396 GLEAN mRNA 476416 476845 0.999995 + . ID=CGI_10018123; scaffold396 GLEAN mRNA 479623 481575 0.990926 - . ID=CGI_10018124; scaffold396 GLEAN promoter 481576 482575 0.990926 - . ID=CGI_10018124; scaffold396 TRF Tandem_Repeat 482945 483332 404 + . . scaffold396 GLEAN promoter 485125 486124 0.650985 + . ID=CGI_10018125; scaffold396 GLEAN mRNA 486125 490260 0.650985 + . ID=CGI_10018125; scaffold396 TRF Tandem_Repeat 492097 492140 88 + . . scaffold396 TRF Tandem_Repeat 495438 495773 501 + . . scaffold396 TRF Tandem_Repeat 496090 496268 134 + . . scaffold396 GLEAN promoter 498307 499306 0.948446 + . ID=CGI_10018126; scaffold396 GLEAN mRNA 499307 505546 0.948446 + . ID=CGI_10018126; scaffold396 TRF Tandem_Repeat 509254 509441 63 + . . scaffold396 TRF Tandem_Repeat 510415 511181 938 + . . scaffold396 TRF Tandem_Repeat 511293 511324 64 + . . scaffold396 GLEAN mRNA 511414 515447 1 - . ID=CGI_10018127; scaffold396 GLEAN promoter 515448 516447 1 - . ID=CGI_10018127; scaffold396 GLEAN mRNA 518488 524493 1 - . ID=CGI_10018128; scaffold396 GLEAN promoter 523686 524685 1 + . ID=CGI_10018129; scaffold396 TRF Tandem_Repeat 524184 524294 138 + . . scaffold396 GLEAN promoter 524494 525493 1 - . ID=CGI_10018128; scaffold396 GLEAN mRNA 524686 527008 1 + . ID=CGI_10018129; scaffold396 GLEAN mRNA 528027 533347 0.999675 - . ID=CGI_10018130; scaffold396 GLEAN promoter 533348 533904 0.999675 - . ID=CGI_10018130; scaffold39600 WUBlastX DNA_Harbinger 300 479 55 - . . scaffold39600 GLEAN mRNA 1645 16928 0.999942 - . ID=CGI_10003464; scaffold39600 TRF Tandem_Repeat 9126 9168 77 + . . scaffold39600 TRF Tandem_Repeat 9974 10037 110 + . . scaffold39600 TRF Tandem_Repeat 12706 12744 78 + . . scaffold39600 GLEAN promoter 16929 17928 0.999942 - . ID=CGI_10003464; scaffold39600 TRF Tandem_Repeat 21424 21472 80 + . . scaffold39600 TRF Tandem_Repeat 23953 23999 94 + . . scaffold39600 TRF Tandem_Repeat 27045 27141 126 + . . scaffold39600 TRF Tandem_Repeat 27326 27359 50 + . . scaffold39600 TRF Tandem_Repeat 31210 31245 72 + . . scaffold39600 TRF Tandem_Repeat 34655 34714 66 + . . scaffold39600 TRF Tandem_Repeat 36544 36795 395 + . . scaffold39600 TRF Tandem_Repeat 40886 40977 112 + . . scaffold39600 TRF Tandem_Repeat 44924 44960 74 + . . scaffold39600 TRF Tandem_Repeat 49319 49360 84 + . . scaffold39600 TRF Tandem_Repeat 50475 50514 80 + . . scaffold39600 TRF Tandem_Repeat 51844 51892 98 + . . scaffold39600 TRF Tandem_Repeat 58384 59241 1354 + . . scaffold39600 GLEAN mRNA 60390 69615 0.593089 - . ID=CGI_10003465; scaffold39600 TRF Tandem_Repeat 64889 64932 88 + . . scaffold39600 TRF Tandem_Repeat 65276 65326 102 + . . scaffold39600 TRF Tandem_Repeat 68705 69054 613 + . . scaffold39600 GLEAN promoter 69616 70615 0.593089 - . ID=CGI_10003465; scaffold39600 TRF Tandem_Repeat 70451 70494 88 + . . scaffold39600 TRF Tandem_Repeat 73303 73361 64 + . . scaffold39620 GLEAN promoter 32983 33982 1 + . ID=CGI_10003471; scaffold39620 GLEAN mRNA 33983 38604 1 + . ID=CGI_10003471; scaffold39620 GLEAN promoter 42331 43330 0.518116 + . ID=CGI_10003472; scaffold39620 GLEAN mRNA 43331 51316 0.518116 + . ID=CGI_10003472; scaffold39620 TRF Tandem_Repeat 51416 51503 158 + . . scaffold39620 TRF Tandem_Repeat 51618 51890 241 + . . scaffold39620 WUBlastX LTR_Pao 67670 67837 110 - . . scaffold39620 WUBlastX LTR_Pao 67792 68175 175 - . . scaffold39620 WUBlastX LTR_Pao 67837 68151 216 - . . scaffold39620 WUBlastX LTR_Pao 68166 68351 151 - . . scaffold39620 WUBlastX LTR_Pao 68317 70326 1422 - . . scaffold39620 WUBlastX LTR_Pao 70323 70742 322 - . . scaffold39620 WUBlastX LTR_Pao 70756 71241 326 - . . scaffold39620 WUBlastX LTR_Pao 71223 72500 520 - . . scaffold39620 WUBlastX LTR_Pao 72583 72906 30 - . . scaffold39620 WUBlastX LTR_Pao 72715 73260 33 - . . scaffold39624 WUBlastX LTR_Ngaro 11650 12144 75 + . . scaffold39624 WUBlastX LTR_Ngaro 12742 13080 103 + . . scaffold39624 WUBlastX LTR_Ngaro 12778 13056 153 + . . scaffold39624 WUBlastX LTR_Gypsy-Cigr 13509 13619 24 + . . scaffold39624 WUBlastX LTR_Gypsy-Cigr 13622 14005 74 + . . scaffold39624 WUBlastX LTR_Gypsy 13631 14320 49 + . . scaffold39624 WUBlastX LTR_Gypsy 13631 14176 61 + . . scaffold39624 WUBlastX LTR_Ngaro 15248 15529 154 + . . scaffold39624 WUBlastX LTR_Ngaro 15535 15777 118 + . . scaffold39624 WUBlastX LTR_Ngaro 15865 16245 70 + . . scaffold39624 WUBlastX LTR_Ngaro 16161 16625 118 + . . scaffold39624 WUBlastX LTR_Ngaro 16630 16704 59 + . . scaffold39624 WUBlastX LTR_Ngaro 16642 16728 34 + . . scaffold39624 TRF Tandem_Repeat 38183 38276 63 + . . scaffold39624 TRF Tandem_Repeat 38183 38272 87 + . . scaffold39624 TRF Tandem_Repeat 40202 40244 86 + . . scaffold39624 TRF Tandem_Repeat 43315 43346 55 + . . scaffold39624 TRF Tandem_Repeat 52625 52737 84 + . . scaffold39624 TRF Tandem_Repeat 54677 54743 89 + . . scaffold39624 TRF Tandem_Repeat 57173 57222 100 + . . scaffold39624 TRF Tandem_Repeat 57403 57429 54 + . . scaffold39624 TRF Tandem_Repeat 57427 57478 104 + . . scaffold39624 TRF Tandem_Repeat 57971 58037 89 + . . scaffold39624 GLEAN mRNA 58139 58390 0.61814 - . ID=CGI_10003502; scaffold39624 GLEAN promoter 58391 59390 0.61814 - . ID=CGI_10003502; scaffold39624 TRF Tandem_Repeat 65738 65793 112 + . . scaffold39624 TRF Tandem_Repeat 71818 71869 67 + . . scaffold39634 GLEAN mRNA 3661 4086 0.999998 - . ID=CGI_10003466; scaffold39634 GLEAN promoter 4087 5086 0.999998 - . ID=CGI_10003466; scaffold39634 GLEAN mRNA 15924 31196 1 - . ID=CGI_10003467; scaffold39634 GLEAN promoter 31197 32196 1 - . ID=CGI_10003467; scaffold39634 GLEAN promoter 33012 34011 1 + . ID=CGI_10003468; scaffold39634 GLEAN mRNA 34012 48953 1 + . ID=CGI_10003468; scaffold39634 GLEAN promoter 48067 49066 1 + . ID=CGI_10003469; scaffold39634 GLEAN mRNA 49067 52130 1 + . ID=CGI_10003469; scaffold39634 GLEAN promoter 65512 66511 1 + . ID=CGI_10003470; scaffold39634 GLEAN mRNA 66512 74717 1 + . ID=CGI_10003470; scaffold39640 WUBlastX LTR_DIRS 233 748 97 - . . scaffold39640 WUBlastX LTR_DIRS 1019 1282 74 - . . scaffold39640 WUBlastX LTR_DIRS 1309 2007 167 - . . scaffold39640 WUBlastX LTR_Gypsy 1980 2993 41 - . . scaffold39640 WUBlastX LTR_DIRS 1989 2840 425 - . . scaffold39640 WUBlastX LTR_DIRS 3038 3481 46 - . . scaffold39640 WUBlastX RC_Helitron 7627 8457 20 - . . scaffold39640 WUBlastX RC_Helitron 7940 8173 52 - . . scaffold39640 WUBlastX RC_Helitron 8190 8303 20 - . . scaffold39640 WUBlastX RC_Helitron 8308 8523 145 - . . scaffold39640 WUBlastX RC_Helitron 8567 9565 289 - . . scaffold39640 WUBlastX RC_Helitron 9490 10836 776 - . . scaffold39640 WUBlastX RC_Helitron 10838 11218 210 - . . scaffold39640 WUBlastX RC_Helitron 11209 12783 836 - . . scaffold39640 WUBlastX RC_Helitron 12867 13043 25 - . . scaffold39640 WUBlastX RC_Helitron 12906 13046 27 - . . scaffold39640 TRF Tandem_Repeat 19634 19673 55 + . . scaffold39640 WUBlastX LINE_L1-Tx1 21272 21334 21 + . . scaffold39640 WUBlastX LINE_L1 21714 23249 232 + . . scaffold39640 WUBlastX LINE_L1-Tx1 21993 24713 1226 + . . scaffold39640 TRF Tandem_Repeat 24825 24884 77 + . . scaffold39640 TRF Tandem_Repeat 44701 44940 201 + . . scaffold39640 TRF Tandem_Repeat 44701 44940 295 + . . scaffold39640 TRF Tandem_Repeat 44710 44919 173 + . . scaffold39640 GLEAN promoter 47828 48827 0.618241 + . ID=CGI_10003500; scaffold39640 WUBlastX DNA_IS4EU 48294 48683 133 + . . scaffold39640 GLEAN mRNA 48828 48986 0.618241 + . ID=CGI_10003500; scaffold39640 WUBlastX DNA_IS4EU 49820 50554 199 + . . scaffold39640 GLEAN mRNA 51087 54120 0.557203 - . ID=CGI_10003501; scaffold39640 WUBlastX DNA_IS4EU 51093 51254 100 - . . scaffold39640 WUBlastX DNA_IS4EU 51245 51808 348 - . . scaffold39640 GLEAN promoter 54121 55120 0.557203 - . ID=CGI_10003501; scaffold39640 WUBlastX LINE_L1-Tx1 57053 57415 128 + . . scaffold39640 WUBlastX LINE_CR1 57424 57669 57 + . . scaffold39640 WUBlastX LINE_L1-Tx1 57747 57968 20 + . . scaffold39640 WUBlastX LINE_L1-Tx1 57789 57971 32 + . . scaffold39640 WUBlastX LINE_L1 57819 57962 37 + . . scaffold39640 WUBlastX LINE_L1-Tx1 58024 59244 218 + . . scaffold39640 WUBlastX LINE_L1-Tx1 59243 59719 258 + . . scaffold39640 WUBlastX LINE_L1-Tx1 59243 60109 213 + . . scaffold39640 WUBlastX LINE_L1 60093 60176 22 + . . scaffold39640 WUBlastX LINE_L1-Tx1 60456 60605 37 + . . scaffold39640 WUBlastX DNA_hAT-Tip100 63119 63508 132 + . . scaffold39640 WUBlastX DNA_hAT-Tip100 64099 64302 63 + . . scaffold39640 WUBlastX DNA_hAT-Tip100 64168 64329 55 + . . scaffold39642 GLEAN promoter 126 1125 0.776637 + . ID=CGI_10003493; scaffold39642 TRF Tandem_Repeat 458 499 84 + . . scaffold39642 GLEAN mRNA 1126 1641 0.776637 + . ID=CGI_10003493; scaffold39642 WUBlastX LTR_Gypsy 1360 1590 23 + . . scaffold39642 WUBlastX DNA_Maverick 1682 2548 483 + . . scaffold39642 WUBlastX DNA_Maverick 2572 2757 123 + . . scaffold39642 GLEAN promoter 2602 3601 0.999982 + . ID=CGI_10003494; scaffold39642 WUBlastX DNA_Maverick 3354 3536 24 + . . scaffold39642 GLEAN mRNA 3602 3979 0.999982 + . ID=CGI_10003494; scaffold39642 WUBlastX DNA_Maverick 4000 5163 528 + . . scaffold39642 WUBlastX DNA_Maverick 5165 5218 25 + . . scaffold39642 WUBlastX DNA_Maverick 5297 5488 79 + . . scaffold39642 WUBlastX DNA_Maverick 5333 5665 136 + . . scaffold39642 TRF Tandem_Repeat 5854 5907 99 + . . scaffold39642 TRF Tandem_Repeat 7457 7529 139 + . . scaffold39642 WUBlastX DNA_Maverick 9317 9925 369 - . . scaffold39642 TRF Tandem_Repeat 10406 10456 75 + . . scaffold39642 WUBlastX DNA_Maverick 11616 12140 177 - . . scaffold39642 WUBlastX DNA_Maverick 11850 12737 406 - . . scaffold39642 GLEAN promoter 11930 12929 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 12732 13112 64 - . . scaffold39642 GLEAN mRNA 12930 17873 0.634289 + . ID=CGI_10003495; scaffold39642 WUBlastX DNA_Maverick 13146 13319 106 - . . scaffold39642 WUBlastX DNA_Maverick 13247 13741 114 - . . scaffold39642 WUBlastX DNA_Maverick 13403 13714 144 - . . scaffold39642 WUBlastX DNA_Maverick 13717 14328 88 - . . scaffold39642 WUBlastX DNA_Maverick 14386 15114 26 - . . scaffold39642 GLEAN mRNA 20024 20449 0.999372 - . ID=CGI_10003497; scaffold39642 GLEAN promoter 20450 21449 0.999372 - . ID=CGI_10003497; scaffold39642 GLEAN mRNA 20675 20995 0.734447 - . ID=CGI_10003498; scaffold39642 GLEAN promoter 20996 21995 0.734447 - . ID=CGI_10003498; scaffold39642 WUBlastX LINE_L1-Tx1 22197 23627 227 - . . scaffold39642 WUBlastX LINE_L1-Tx1 23488 24336 547 - . . scaffold39642 WUBlastX LINE_L1 23497 24495 401 - . . scaffold39642 WUBlastX LINE_L1-Tx1 24330 24824 315 - . . scaffold39642 WUBlastX LINE_L1-Tx1 24826 25065 78 - . . scaffold39642 WUBlastX LINE_L1-Tx1 25058 25786 473 - . . scaffold39642 WUBlastX LINE_L1 25843 26595 324 - . . scaffold39642 WUBlastX LINE_L1-Tx1 25852 26436 413 - . . scaffold39642 WUBlastX LINE_L1-Tx1 26430 26924 315 - . . scaffold39642 WUBlastX LINE_L1-Tx1 26926 27165 78 - . . scaffold39642 WUBlastX LINE_L1-Tx1 27158 27904 471 - . . scaffold39642 WUBlastX LINE_L1-Tx1 27862 28098 144 - . . scaffold39642 TRF Tandem_Repeat 29081 29151 142 + . . scaffold39642 TRF Tandem_Repeat 31058 31492 620 + . . scaffold39642 WUBlastX LINE_L2 32564 32746 68 - . . scaffold39642 WUBlastX LINE_L2 32728 33228 224 - . . scaffold39642 WUBlastX LINE_CR1 33210 33380 102 - . . scaffold39642 TRF Tandem_Repeat 42124 42528 492 + . . scaffold39642 WUBlastX LTR_DIRS 52885 53400 82 + . . scaffold39642 WUBlastX LTR_Gypsy 53502 53603 27 + . . scaffold39642 WUBlastX LTR_DIRS 53676 53921 182 + . . scaffold39642 WUBlastX LTR_DIRS 53947 54519 262 + . . scaffold39642 WUBlastX LTR_Ngaro 53998 54639 25 + . . scaffold39642 WUBlastX LTR_ERVK 54665 54739 22 + . . scaffold39642 WUBlastX LTR_DIRS 54804 55196 154 + . . scaffold39642 WUBlastX LTR_DIRS 55220 55336 39 + . . scaffold39642 WUBlastX LTR_DIRS 61438 62229 305 + . . scaffold39642 WUBlastX LTR_DIRS? 62259 62411 116 + . . scaffold39642 WUBlastX DNA_Harbinger 63446 64108 193 + . . scaffold39652 TRF Tandem_Repeat 5481 5528 96 + . . scaffold39652 TRF Tandem_Repeat 6386 6426 73 + . . scaffold39652 GLEAN promoter 30557 31556 0.959059 + . ID=CGI_10003503; scaffold39652 GLEAN mRNA 31557 32330 0.959059 + . ID=CGI_10003503; scaffold39652 TRF Tandem_Repeat 32495 32522 56 + . . scaffold39652 GLEAN mRNA 38911 42557 0.889922 - . ID=CGI_10003504; scaffold39652 GLEAN promoter 42558 43557 0.889922 - . ID=CGI_10003504; scaffold39652 GLEAN promoter 60488 61487 0.595539 + . ID=CGI_10003505; scaffold39652 GLEAN mRNA 61488 61877 0.595539 + . ID=CGI_10003505; scaffold39652 WUBlastX LINE_RTE-X 62186 62563 48 - . . scaffold39652 WUBlastX LINE_RTE-X 62279 62638 83 - . . scaffold39652 WUBlastX LINE_RTE-X 62291 62569 93 - . . scaffold39652 WUBlastX LINE_RTE-X 62324 62743 42 - . . scaffold39652 WUBlastX LINE_RTE-X 62778 63089 55 - . . scaffold39652 WUBlastX LINE_RTE-X 62850 63056 56 - . . scaffold39652 WUBlastX LINE_RTE-X 62892 63056 79 - . . scaffold39652 WUBlastX LINE_RTE-X 63095 63349 44 - . . scaffold39652 WUBlastX LINE_RTE-X 63746 63835 42 - . . scaffold39652 WUBlastX LINE_RTE-X 63770 64324 100 - . . scaffold39652 WUBlastX LINE_L2 63866 64450 27 - . . scaffold39652 GLEAN mRNA 64383 64817 0.999372 - . ID=CGI_10003506; scaffold39652 GLEAN promoter 64818 65817 0.999372 - . ID=CGI_10003506; scaffold39688 GLEAN mRNA 2446 31582 0.324366 - . ID=CGI_10003542; scaffold39688 GLEAN promoter 31583 32582 0.324366 - . ID=CGI_10003542; scaffold39688 GLEAN mRNA 53511 68724 0.791417 - . ID=CGI_10003543; scaffold39688 GLEAN promoter 68725 69724 0.791417 - . ID=CGI_10003543; scaffold39694 GLEAN promoter 4227 5226 0.862296 + . ID=CGI_10003544; scaffold39694 GLEAN mRNA 5227 7596 0.862296 + . ID=CGI_10003544; scaffold39694 GLEAN promoter 6621 7620 0.618102 + . ID=CGI_10003545; scaffold39694 GLEAN mRNA 7621 7848 0.618102 + . ID=CGI_10003545; scaffold39694 GLEAN mRNA 11021 25270 0.934576 - . ID=CGI_10003546; scaffold39694 GLEAN promoter 25271 26270 0.934576 - . ID=CGI_10003546; scaffold39694 GLEAN mRNA 33720 43758 0.99999 - . ID=CGI_10003547; scaffold39694 GLEAN promoter 40226 41225 0.497291 + . ID=CGI_10003548; scaffold39694 GLEAN mRNA 41226 42979 0.497291 + . ID=CGI_10003548; scaffold39694 GLEAN promoter 43759 44758 0.99999 - . ID=CGI_10003547; scaffold39694 GLEAN promoter 70746 71745 1 + . ID=CGI_10003549; scaffold39694 GLEAN mRNA 71746 72991 1 + . ID=CGI_10003549; scaffold39694 GLEAN promoter 74837 75836 1 + . ID=CGI_10003550; scaffold39694 GLEAN mRNA 75837 76825 1 + . ID=CGI_10003550; scaffold39696 GLEAN promoter 1 499 0.916246 + . ID=CGI_10003522; scaffold39696 GLEAN mRNA 500 843 0.916246 + . ID=CGI_10003522; scaffold39696 TRF Tandem_Repeat 5998 6187 149 + . . scaffold39696 TRF Tandem_Repeat 8483 8527 63 + . . scaffold39696 TRF Tandem_Repeat 10985 11042 75 + . . scaffold39696 TRF Tandem_Repeat 10988 11045 66 + . . scaffold39696 GLEAN promoter 20473 21472 1 + . ID=CGI_10003523; scaffold39696 GLEAN mRNA 21473 35476 1 + . ID=CGI_10003523; scaffold39696 TRF Tandem_Repeat 32669 33475 1181 + . . scaffold39696 TRF Tandem_Repeat 34137 34993 1129 + . . scaffold39696 WUBlastX LTR_Ngaro 36918 37496 65 - . . scaffold39696 GLEAN promoter 40717 41716 0.990766 + . ID=CGI_10003524; scaffold39696 GLEAN mRNA 41717 59740 0.990766 + . ID=CGI_10003524; scaffold39696 WUBlastX DNA_TcMar-Fot1 44723 44962 24 - . . scaffold39696 WUBlastX DNA_Harbinger 56512 56622 34 + . . scaffold39696 TRF Tandem_Repeat 57821 58492 702 + . . scaffold39696 WUBlastX DNA_Merlin 62082 62381 70 - . . scaffold39696 TRF Tandem_Repeat 73570 73596 54 + . . scaffold397 WUBlastX LINE_L1-Tx1 12320 12856 62 + . . scaffold397 WUBlastX LINE_L1 12434 12994 127 + . . scaffold397 WUBlastX LINE_L1-Tx1 12443 12847 197 + . . scaffold397 TRF Tandem_Repeat 14780 14826 55 + . . scaffold397 TRF Tandem_Repeat 17117 17223 178 + . . scaffold397 TRF Tandem_Repeat 17575 17615 82 + . . scaffold397 WUBlastX LINE_L1 24240 24665 103 + . . scaffold397 GLEAN promoter 27845 28844 0.595512 + . ID=CGI_10003359; scaffold397 TRF Tandem_Repeat 28175 28201 54 + . . scaffold397 GLEAN mRNA 28845 29921 0.595512 + . ID=CGI_10003359; scaffold397 TRF Tandem_Repeat 39101 39135 56 + . . scaffold397 TRF Tandem_Repeat 41123 41177 65 + . . scaffold397 TRF Tandem_Repeat 41126 41181 71 + . . scaffold397 WUBlastX LINE_L1-Tx1 44895 46199 214 - . . scaffold397 WUBlastX LINE_L1-Tx1 46042 46377 41 - . . scaffold397 WUBlastX LINE_L1-Tx1 46042 46266 89 - . . scaffold397 TRF Tandem_Repeat 67442 67478 67 + . . scaffold39712 GLEAN mRNA 174 6007 0.999998 - . ID=CGI_10003593; scaffold39712 GLEAN promoter 6008 7007 0.999998 - . ID=CGI_10003593; scaffold39712 TRF Tandem_Repeat 26281 26305 50 + . . scaffold39712 WUBlastX LINE_RTE-X 26631 27380 133 - . . scaffold39712 WUBlastX LINE_RTE-X 27198 27434 51 - . . scaffold39712 GLEAN mRNA 30707 40895 0.558395 - . ID=CGI_10003594; scaffold39712 TRF Tandem_Repeat 31656 31710 110 + . . scaffold39712 GLEAN promoter 40896 41895 0.558395 - . ID=CGI_10003594; scaffold39712 TRF Tandem_Repeat 40939 41122 314 + . . scaffold39712 GLEAN mRNA 41161 47094 0.994741 - . ID=CGI_10003595; scaffold39712 GLEAN promoter 47095 48094 0.994741 - . ID=CGI_10003595; scaffold39716 GLEAN promoter 11283 12282 0.405934 + . ID=CGI_10003560; scaffold39716 GLEAN mRNA 12283 26559 0.405934 + . ID=CGI_10003560; scaffold39716 GLEAN promoter 39638 40637 0.892761 + . ID=CGI_10003562; scaffold39716 GLEAN mRNA 40638 66400 0.892761 + . ID=CGI_10003562; scaffold39716 GLEAN mRNA 70881 72538 0.734569 - . ID=CGI_10003563; scaffold39716 GLEAN promoter 72539 73538 0.734569 - . ID=CGI_10003563; scaffold39720 WUBlastX DNA_Harbinger 924 1292 178 + . . scaffold39720 WUBlastX DNA_Harbinger 2918 3868 592 - . . scaffold39720 GLEAN promoter 19080 20079 0.634579 + . ID=CGI_10003514; scaffold39720 GLEAN mRNA 20080 26031 0.634579 + . ID=CGI_10003514; scaffold39720 TRF Tandem_Repeat 20610 20662 97 + . . scaffold39720 GLEAN promoter 27292 28291 1 + . ID=CGI_10003515; scaffold39720 GLEAN mRNA 28292 34960 1 + . ID=CGI_10003515; scaffold39720 GLEAN promoter 36035 37034 0.702376 + . ID=CGI_10003516; scaffold39720 GLEAN mRNA 37035 47449 0.702376 + . ID=CGI_10003516; scaffold39720 GLEAN mRNA 55948 60064 0.976492 - . ID=CGI_10003517; scaffold39720 GLEAN promoter 60065 61064 0.976492 - . ID=CGI_10003517; scaffold39720 GLEAN promoter 60499 61498 0.536637 + . ID=CGI_10003518; scaffold39720 GLEAN mRNA 61499 68686 0.536637 + . ID=CGI_10003518; scaffold39720 TRF Tandem_Repeat 75522 75560 78 + . . scaffold39720 TRF Tandem_Repeat 75756 75795 80 + . . scaffold39724 TRF Tandem_Repeat 5593 5627 52 + . . scaffold39724 GLEAN promoter 8052 9051 0.859839 + . ID=CGI_10003578; scaffold39724 GLEAN mRNA 9052 37427 0.859839 + . ID=CGI_10003578; scaffold39724 TRF Tandem_Repeat 11867 11902 72 + . . scaffold39724 TRF Tandem_Repeat 17836 17887 104 + . . scaffold39724 TRF Tandem_Repeat 26678 27074 569 + . . scaffold39724 TRF Tandem_Repeat 27082 27439 431 + . . scaffold39724 TRF Tandem_Repeat 27082 27498 428 + . . scaffold39724 TRF Tandem_Repeat 27105 27498 286 + . . scaffold39724 TRF Tandem_Repeat 27191 27492 253 + . . scaffold39724 WUBlastX RC_Helitron 27755 28681 271 + . . scaffold39724 WUBlastX RC_Helitron 28094 28858 216 + . . scaffold39724 WUBlastX RC_Helitron 28931 30577 496 + . . scaffold39724 TRF Tandem_Repeat 30599 30854 307 + . . scaffold39724 TRF Tandem_Repeat 30617 30817 101 + . . scaffold39724 WUBlastX RC_Helitron 30866 36187 3161 + . . scaffold39724 GLEAN promoter 36683 37682 1 + . ID=CGI_10003579; scaffold39724 TRF Tandem_Repeat 36867 36911 83 + . . scaffold39724 GLEAN mRNA 37683 40007 1 + . ID=CGI_10003579; scaffold39724 GLEAN mRNA 41566 43584 0.824609 - . ID=CGI_10003580; scaffold39724 GLEAN promoter 43585 44584 0.824609 - . ID=CGI_10003580; scaffold39724 GLEAN promoter 54483 55482 0.987675 + . ID=CGI_10003581; scaffold39724 GLEAN mRNA 55483 68048 0.987675 + . ID=CGI_10003581; scaffold39724 TRF Tandem_Repeat 62310 62365 71 + . . scaffold39724 TRF Tandem_Repeat 62314 62368 65 + . . scaffold39724 TRF Tandem_Repeat 65508 65573 114 + . . scaffold39724 GLEAN promoter 67435 68434 0.996413 + . ID=CGI_10003582; scaffold39724 GLEAN mRNA 68435 72134 0.996413 + . ID=CGI_10003582; scaffold39730 TRF Tandem_Repeat 216 253 60 + . . scaffold39730 TRF Tandem_Repeat 1915 1951 74 + . . scaffold39730 GLEAN mRNA 3685 28743 0.191255 - . ID=CGI_10003588; scaffold39730 TRF Tandem_Repeat 4039 4072 68 + . . scaffold39730 TRF Tandem_Repeat 10519 10575 114 + . . scaffold39730 TRF Tandem_Repeat 10647 10691 90 + . . scaffold39730 GLEAN promoter 15282 16281 0.999947 + . ID=CGI_10003589; scaffold39730 GLEAN mRNA 16282 30561 0.999947 + . ID=CGI_10003589; scaffold39730 WUBlastX DNA_TcMar-Marin 16544 16909 68 + . . scaffold39730 WUBlastX DNA_TcMar-Marin 16649 16900 90 + . . scaffold39730 WUBlastX DNA_TcMar-Marin 17258 17419 48 + . . scaffold39730 TRF Tandem_Repeat 18901 18945 81 + . . scaffold39730 GLEAN promoter 28744 29743 0.191255 - . ID=CGI_10003588; scaffold39730 GLEAN mRNA 32591 38103 0.983465 - . ID=CGI_10003590; scaffold39730 GLEAN promoter 37074 38073 0.591726 + . ID=CGI_10003591; scaffold39730 GLEAN mRNA 38074 56917 0.591726 + . ID=CGI_10003591; scaffold39730 GLEAN promoter 38104 39103 0.983465 - . ID=CGI_10003590; scaffold39730 TRF Tandem_Repeat 41369 42292 1201 + . . scaffold39730 TRF Tandem_Repeat 43244 43346 89 + . . scaffold39730 GLEAN promoter 56150 57149 0.991222 + . ID=CGI_10003592; scaffold39730 GLEAN mRNA 57150 76751 0.991222 + . ID=CGI_10003592; scaffold39732 GLEAN mRNA 11937 21312 0.537452 - . ID=CGI_10003551; scaffold39732 GLEAN promoter 21313 22312 0.537452 - . ID=CGI_10003551; scaffold39732 GLEAN promoter 30374 31373 0.999999 + . ID=CGI_10003553; scaffold39732 GLEAN mRNA 31374 41431 0.999999 + . ID=CGI_10003553; scaffold39732 GLEAN promoter 44371 45370 0.937811 + . ID=CGI_10003554; scaffold39732 GLEAN mRNA 45371 62289 0.937811 + . ID=CGI_10003554; scaffold39732 GLEAN mRNA 63605 70665 0.993907 - . ID=CGI_10003555; scaffold39732 GLEAN promoter 70666 71665 0.993907 - . ID=CGI_10003555; scaffold39732 GLEAN promoter 70738 71737 1 + . ID=CGI_10003556; scaffold39732 GLEAN mRNA 71738 74931 1 + . ID=CGI_10003556; scaffold39740 GLEAN promoter 1 279 1 + . ID=CGI_10003530; scaffold39740 GLEAN mRNA 280 2463 1 + . ID=CGI_10003530; scaffold39740 GLEAN promoter 8402 9401 0.836238 + . ID=CGI_10003531; scaffold39740 GLEAN mRNA 9402 10061 0.836238 + . ID=CGI_10003531; scaffold39740 GLEAN promoter 10544 11543 0.651134 + . ID=CGI_10003532; scaffold39740 GLEAN mRNA 11544 20701 0.651134 + . ID=CGI_10003532; scaffold39740 GLEAN mRNA 21642 23117 0.988638 - . ID=CGI_10003533; scaffold39740 GLEAN promoter 23118 24117 0.988638 - . ID=CGI_10003533; scaffold39740 GLEAN promoter 57734 58733 0.999973 + . ID=CGI_10003534; scaffold39740 GLEAN mRNA 58734 60995 0.999973 + . ID=CGI_10003534; scaffold39740 GLEAN promoter 60564 61563 1 + . ID=CGI_10003535; scaffold39740 GLEAN mRNA 61564 69264 1 + . ID=CGI_10003535; scaffold39740 GLEAN mRNA 70405 75717 1 - . ID=CGI_10003536; scaffold39740 GLEAN promoter 75718 76610 1 - . ID=CGI_10003536; scaffold39744 TRF Tandem_Repeat 3409 3438 60 + . . scaffold39744 GLEAN mRNA 4929 12751 0.991719 - . ID=CGI_10003601; scaffold39744 TRF Tandem_Repeat 12264 12584 498 + . . scaffold39744 GLEAN promoter 12752 13751 0.991719 - . ID=CGI_10003601; scaffold39744 GLEAN mRNA 18215 20817 0.998817 - . ID=CGI_10003602; scaffold39744 GLEAN promoter 20818 21817 0.998817 - . ID=CGI_10003602; scaffold39744 WUBlastX LINE_RTE-X 23572 23871 98 - . . scaffold39744 WUBlastX LINE_RTE-X 23572 23934 71 - . . scaffold39744 WUBlastX LINE_RTE-X 23716 23865 108 - . . scaffold39744 WUBlastX LINE_L1 24243 25244 33 + . . scaffold39744 WUBlastX LINE_L1-Tx1 24609 25562 114 + . . scaffold39744 WUBlastX LINE_L1-Tx1 24771 26195 469 + . . scaffold39744 WUBlastX LINE_L1-Tx1 30219 30587 126 + . . scaffold39744 GLEAN promoter 30487 31486 1 + . ID=CGI_10003603; scaffold39744 GLEAN mRNA 31487 45012 1 + . ID=CGI_10003603; scaffold39744 TRF Tandem_Repeat 36199 37020 932 + . . scaffold39744 TRF Tandem_Repeat 36257 37038 618 + . . scaffold39744 TRF Tandem_Repeat 40137 40180 79 + . . scaffold39744 TRF Tandem_Repeat 40292 41039 1013 + . . scaffold39744 GLEAN mRNA 46691 56034 0.997818 - . ID=CGI_10003604; scaffold39744 TRF Tandem_Repeat 53585 54574 928 + . . scaffold39744 GLEAN promoter 56035 57034 0.997818 - . ID=CGI_10003604; scaffold39744 GLEAN promoter 61625 62624 0.999177 + . ID=CGI_10003605; scaffold39744 GLEAN mRNA 62625 76670 0.999177 + . ID=CGI_10003605; scaffold39744 TRF Tandem_Repeat 63043 63284 308 + . . scaffold39744 TRF Tandem_Repeat 64885 65083 291 + . . scaffold39744 TRF Tandem_Repeat 76284 76404 134 + . . scaffold39744 TRF Tandem_Repeat 77148 77328 118 + . . scaffold39754 GLEAN promoter 1606 2605 1 + . ID=CGI_10003596; scaffold39754 GLEAN mRNA 2606 7817 1 + . ID=CGI_10003596; scaffold39754 TRF Tandem_Repeat 8010 8105 106 + . . scaffold39754 GLEAN promoter 8848 9847 0.584426 + . ID=CGI_10003597; scaffold39754 GLEAN mRNA 9848 11910 0.584426 + . ID=CGI_10003597; scaffold39754 GLEAN promoter 10997 11996 0.584385 + . ID=CGI_10003598; scaffold39754 GLEAN mRNA 11997 16678 0.584385 + . ID=CGI_10003598; scaffold39754 WUBlastX LTR_Pao 12162 12515 54 + . . scaffold39754 TRF Tandem_Repeat 12544 12799 224 + . . scaffold39754 TRF Tandem_Repeat 12574 12799 267 + . . scaffold39754 WUBlastX LTR_Pao 12858 14069 700 + . . scaffold39754 TRF Tandem_Repeat 14096 14778 1096 + . . scaffold39754 GLEAN mRNA 24830 65211 0.865002 - . ID=CGI_10003599; scaffold39754 GLEAN promoter 65212 66211 0.865002 - . ID=CGI_10003599; scaffold39754 TRF Tandem_Repeat 65898 65933 72 + . . scaffold39754 GLEAN promoter 66384 67383 0.886685 + . ID=CGI_10003600; scaffold39754 GLEAN mRNA 67384 72705 0.886685 + . ID=CGI_10003600; scaffold39754 TRF Tandem_Repeat 69917 69950 68 + . . scaffold39754 TRF Tandem_Repeat 74179 74210 64 + . . scaffold39754 TRF Tandem_Repeat 74208 74251 88 + . . scaffold39758 TRF Tandem_Repeat 786 1616 713 + . . scaffold39758 TRF Tandem_Repeat 811 1536 902 + . . scaffold39758 WUBlastX DNA_IS4EU 4774 4998 52 + . . scaffold39758 WUBlastX DNA_IS4EU 5297 5494 76 + . . scaffold39758 WUBlastX LTR_DIRS 18031 18309 118 - . . scaffold39758 WUBlastX LTR_DIRS 18034 18408 98 - . . scaffold39758 WUBlastX LTR_DIRS 18542 19120 138 - . . scaffold39758 WUBlastX LTR_DIRS 18680 19141 329 - . . scaffold39758 WUBlastX LTR_DIRS 19003 19608 390 - . . scaffold39758 WUBlastX LTR_DIRS 19592 19717 94 - . . scaffold39758 WUBlastX DNA_P 20884 21174 118 + . . scaffold39758 GLEAN promoter 20995 21994 0.741708 + . ID=CGI_10003537; scaffold39758 GLEAN mRNA 21995 23195 0.741708 + . ID=CGI_10003537; scaffold39758 WUBlastX DNA_Kolobok 22237 22599 122 + . . scaffold39758 GLEAN promoter 24354 25353 0.94461 + . ID=CGI_10003538; scaffold39758 GLEAN mRNA 25354 37499 0.94461 + . ID=CGI_10003538; scaffold39758 TRF Tandem_Repeat 28249 29466 1408 + . . scaffold39758 TRF Tandem_Repeat 35417 35458 50 + . . scaffold39758 TRF Tandem_Repeat 40448 40489 84 + . . scaffold39758 TRF Tandem_Repeat 45672 45712 82 + . . scaffold39758 GLEAN promoter 52849 53848 1 + . ID=CGI_10003539; scaffold39758 GLEAN mRNA 53849 66681 1 + . ID=CGI_10003539; scaffold39758 TRF Tandem_Repeat 54928 54985 53 + . . scaffold39758 TRF Tandem_Repeat 55543 55776 336 + . . scaffold39758 WUBlastX LINE_RTE-BovB 59680 60216 89 - . . scaffold39758 WUBlastX LINE_RTE-BovB 59772 60683 303 - . . scaffold39758 WUBlastX LINE_RTE-BovB 60507 60746 81 - . . scaffold39758 WUBlastX LINE_L1 60507 60794 29 - . . scaffold39758 WUBlastX LINE_RTE-X 61393 61785 40 - . . scaffold39758 WUBlastX LINE_RTE-BovB 61564 61815 174 - . . scaffold39758 WUBlastX LINE_RTE-BovB 61591 61929 103 - . . scaffold39758 WUBlastX LINE_RTE-BovB 61893 62288 136 - . . scaffold39758 WUBlastX LINE_CR1 62211 62309 24 - . . scaffold39758 WUBlastX LINE_RTE-BovB 62305 62484 131 - . . scaffold39758 WUBlastX LINE_RTE-BovB 62484 62645 103 - . . scaffold39758 WUBlastX LINE_RTE-BovB 62903 63028 29 - . . scaffold39758 WUBlastX LINE_RTE-BovB 62980 63174 31 - . . scaffold39758 WUBlastX LINE_RTE-BovB 63046 63252 37 - . . scaffold39758 WUBlastX LINE_RTE-BovB 63049 63201 71 - . . scaffold39758 WUBlastX LINE_RTE-BovB 63049 63354 36 - . . scaffold39758 WUBlastX LTR_DIRS 69379 69918 186 - . . scaffold39758 WUBlastX LTR_DIRS 69545 70189 63 - . . scaffold39758 WUBlastX LTR_DIRS 70176 70313 23 - . . scaffold39758 WUBlastX LTR_Gypsy 72206 72976 29 - . . scaffold39758 WUBlastX LTR_DIRS 72242 72844 386 - . . scaffold39758 WUBlastX LTR_DIRS 72963 73610 128 - . . scaffold39778 TRF Tandem_Repeat 5172 5202 62 + . . scaffold39778 GLEAN mRNA 8910 9134 0.999372 - . ID=CGI_10003606; scaffold39778 GLEAN promoter 9135 10134 0.999372 - . ID=CGI_10003606; scaffold39778 TRF Tandem_Repeat 9649 9694 92 + . . scaffold39778 TRF Tandem_Repeat 16169 16204 72 + . . scaffold39778 TRF Tandem_Repeat 18478 18540 126 + . . scaffold39778 GLEAN promoter 20110 21109 0.91966 + . ID=CGI_10003607; scaffold39778 GLEAN mRNA 21110 27342 0.91966 + . ID=CGI_10003607; scaffold39778 TRF Tandem_Repeat 29727 29776 100 + . . scaffold39778 GLEAN promoter 33210 34209 0.521329 + . ID=CGI_10003608; scaffold39778 TRF Tandem_Repeat 33708 33744 65 + . . scaffold39778 GLEAN mRNA 34210 51922 0.521329 + . ID=CGI_10003608; scaffold39778 TRF Tandem_Repeat 37087 37365 444 + . . scaffold39778 TRF Tandem_Repeat 42275 42427 105 + . . scaffold39778 WUBlastX LINE_RTE-X 42561 43463 451 + . . scaffold39778 WUBlastX LINE_RTE-X 43460 43759 70 + . . scaffold39778 WUBlastX LINE_RTE-X 43475 43642 88 + . . scaffold39778 GLEAN mRNA 44249 49225 1 - . ID=CGI_10003609; scaffold39778 GLEAN promoter 49226 50225 1 - . ID=CGI_10003609; scaffold39778 GLEAN promoter 52159 53158 0.997639 + . ID=CGI_10003610; scaffold39778 GLEAN mRNA 53159 53773 0.997639 + . ID=CGI_10003610; scaffold39778 GLEAN promoter 54232 55231 0.984965 + . ID=CGI_10003611; scaffold39778 GLEAN mRNA 55232 55552 0.984965 + . ID=CGI_10003611; scaffold39778 GLEAN mRNA 56712 68685 0.806384 - . ID=CGI_10003612; scaffold39778 TRF Tandem_Repeat 60178 60357 360 + . . scaffold39778 WUBlastX LINE_RTE-X 62638 62955 73 - . . scaffold39778 WUBlastX LINE_RTE-X 62794 63021 69 - . . scaffold39778 TRF Tandem_Repeat 63912 63956 90 + . . scaffold39778 TRF Tandem_Repeat 64638 65054 422 + . . scaffold39778 TRF Tandem_Repeat 66878 66935 116 + . . scaffold39778 GLEAN promoter 68686 69685 0.806384 - . ID=CGI_10003612; scaffold39778 GLEAN mRNA 70298 77622 1 - . ID=CGI_10003613; scaffold39778 TRF Tandem_Repeat 72746 72784 78 + . . scaffold39778 GLEAN promoter 77623 78036 1 - . ID=CGI_10003613; scaffold39790 GLEAN mRNA 1685 2173 0.776794 - . ID=CGI_10003623; scaffold39790 GLEAN promoter 2174 3173 0.776794 - . ID=CGI_10003623; scaffold39790 WUBlastX LINE_L2 4290 4868 170 + . . scaffold39790 WUBlastX LINE_CR1-L2 4377 5051 304 + . . scaffold39790 WUBlastX LINE_CR1-L2 4383 4943 325 + . . scaffold39790 WUBlastX LINE_CR1-L2 4401 5270 222 + . . scaffold39790 TRF Tandem_Repeat 8728 8849 128 + . . scaffold39790 TRF Tandem_Repeat 8734 8849 117 + . . scaffold39790 TRF Tandem_Repeat 59404 59457 108 + . . scaffold39790 TRF Tandem_Repeat 59834 59878 90 + . . scaffold39790 WUBlastX LINE_Penelope 67014 67268 155 + . . scaffold39790 WUBlastX LINE_Penelope 67301 67978 249 + . . scaffold39790 TRF Tandem_Repeat 73737 73788 67 + . . scaffold398 GLEAN promoter 1 895 0.911211 + . ID=CGI_10004360; scaffold398 GLEAN mRNA 896 15325 0.911211 + . ID=CGI_10004360; scaffold398 WUBlastX LINE_Jockey 2887 3078 21 - . . scaffold398 WUBlastX LINE_L2-Hydra 2935 4602 46 - . . scaffold398 WUBlastX LINE_L1 3274 3912 53 - . . scaffold398 WUBlastX LINE_CR1-L2 3457 3918 156 - . . scaffold398 WUBlastX LINE_Jockey 3466 4479 128 - . . scaffold398 WUBlastX LINE_CR1 4231 4722 31 - . . scaffold398 WUBlastX LINE_CR1 4231 4593 83 - . . scaffold398 WUBlastX LINE_L1 4743 4859 22 - . . scaffold398 WUBlastX LINE_L2 4764 4853 27 - . . scaffold398 WUBlastX LINE_L2 4767 4877 20 - . . scaffold398 TRF Tandem_Repeat 16986 17389 772 + . . scaffold398 WUBlastX LINE_RTE-X 28885 29379 134 + . . scaffold398 WUBlastX LINE_RTE-X 28906 29325 252 + . . scaffold398 WUBlastX LINE_RTE-X 29307 29492 79 + . . scaffold398 WUBlastX LINE_RTE-X 30531 30776 48 + . . scaffold398 WUBlastX LINE_RTE-X 30796 30957 84 + . . scaffold398 WUBlastX LINE_L1 30932 31243 39 + . . scaffold398 WUBlastX LINE_RTE-X 31013 31417 170 + . . scaffold398 WUBlastX LINE_RTE-X 31248 31778 183 + . . scaffold398 WUBlastX LINE_RTE-X 31350 31775 288 + . . scaffold398 GLEAN promoter 35290 36289 0.999674 + . ID=CGI_10004361; scaffold398 TRF Tandem_Repeat 35758 35805 96 + . . scaffold398 GLEAN mRNA 36290 48236 0.999674 + . ID=CGI_10004361; scaffold398 WUBlastX LINE_RTE-X 43372 43683 111 - . . scaffold398 WUBlastX LINE_RTE-X 43441 43779 63 - . . scaffold398 WUBlastX LINE_RTE-X 43468 43722 106 - . . scaffold398 TRF Tandem_Repeat 46561 46635 143 + . . scaffold398 TRF Tandem_Repeat 66869 66985 118 + . . scaffold398 GLEAN promoter 67988 68987 0.946816 + . ID=CGI_10004362; scaffold398 GLEAN mRNA 68988 82788 0.946816 + . ID=CGI_10004362; scaffold398 TRF Tandem_Repeat 75993 76032 80 + . . scaffold398 TRF Tandem_Repeat 81221 81281 77 + . . scaffold398 GLEAN promoter 82383 83382 0.999612 + . ID=CGI_10004363; scaffold398 GLEAN mRNA 83383 90357 0.999612 + . ID=CGI_10004363; scaffold398 TRF Tandem_Repeat 85754 85805 50 + . . scaffold398 TRF Tandem_Repeat 85974 87328 1564 + . . scaffold398 GLEAN mRNA 90945 96775 1 - . ID=CGI_10004364; scaffold398 TRF Tandem_Repeat 91580 91736 172 + . . scaffold398 TRF Tandem_Repeat 95675 95733 118 + . . scaffold398 GLEAN promoter 96776 97662 1 - . ID=CGI_10004364; scaffold398 TRF Tandem_Repeat 97132 97375 470 + . . scaffold39800 GLEAN promoter 53091 54090 1 + . ID=CGI_10003628; scaffold39800 GLEAN mRNA 54091 64211 1 + . ID=CGI_10003628; scaffold39804 TRF Tandem_Repeat 1504 1542 51 + . . scaffold39804 WUBlastX LINE_RTE-X 2095 2787 77 + . . scaffold39804 WUBlastX LINE_RTE-X 2332 2778 92 + . . scaffold39804 WUBlastX LINE_RTE-X 2434 2802 95 + . . scaffold39804 WUBlastX LINE_RTE-X 2449 2952 31 + . . scaffold39804 TRF Tandem_Repeat 13431 13765 465 + . . scaffold39804 TRF Tandem_Repeat 13431 13919 578 + . . scaffold39804 GLEAN promoter 14936 15935 1 + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_RTE-BovB 15080 15382 56 - . . scaffold39804 WUBlastX LINE_RTE-BovB 15366 15668 55 - . . scaffold39804 GLEAN mRNA 15936 20719 1 + . ID=CGI_10003618; scaffold39804 WUBlastX LINE_L1-Tx1 17692 17949 44 - . . scaffold39804 WUBlastX LINE_L1-Tx1 17752 17973 69 - . . scaffold39804 WUBlastX LINE_L1-Tx1 17767 18012 67 - . . scaffold39804 WUBlastX LINE_L1-Tx1 18330 18596 50 - . . scaffold39804 GLEAN promoter 22527 23526 0.829502 + . ID=CGI_10003619; scaffold39804 GLEAN mRNA 23527 38111 0.829502 + . ID=CGI_10003619; scaffold39804 TRF Tandem_Repeat 34286 34338 70 + . . scaffold39804 TRF Tandem_Repeat 34286 34337 50 + . . scaffold39804 TRF Tandem_Repeat 34287 34321 52 + . . scaffold39804 GLEAN mRNA 45401 55574 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_RTE-BovB 52207 52539 64 - . . scaffold39804 WUBlastX LINE_RTE-BovB 52276 52467 71 - . . scaffold39804 WUBlastX LINE_L2 53766 53882 20 - . . scaffold39804 WUBlastX LINE_CR1 53835 54164 28 - . . scaffold39804 WUBlastX LINE_Jockey 53881 54027 34 - . . scaffold39804 WUBlastX LINE_RTE-BovB 54071 54382 60 - . . scaffold39804 WUBlastX LINE_CR1-L2 54137 54493 79 - . . scaffold39804 WUBlastX LINE_RTE-X 54167 54457 108 - . . scaffold39804 WUBlastX LINE_Jockey 54563 54910 25 - . . scaffold39804 WUBlastX LINE_L2 54692 54913 50 - . . scaffold39804 WUBlastX LINE_L2 54737 54910 61 - . . scaffold39804 WUBlastX LINE_L2 54761 55000 41 - . . scaffold39804 GLEAN promoter 55575 56574 0.999999 - . ID=CGI_10003620; scaffold39804 WUBlastX LINE_L1 56508 56945 32 - . . scaffold39804 WUBlastX LINE_L2-Hydra 56631 57764 38 - . . scaffold39804 WUBlastX LINE_Jockey 57120 57704 39 - . . scaffold39804 GLEAN promoter 58158 59157 1 + . ID=CGI_10003621; scaffold39804 GLEAN mRNA 59158 61271 1 + . ID=CGI_10003621; scaffold39804 GLEAN mRNA 63582 68148 0.999999 - . ID=CGI_10003622; scaffold39804 TRF Tandem_Repeat 67160 67207 64 + . . scaffold39804 GLEAN promoter 68149 69148 0.999999 - . ID=CGI_10003622; scaffold39804 WUBlastX LTR_Gypsy 74396 75820 842 + . . scaffold39858 WUBlastX LTR_Pao 3266 4324 169 + . . scaffold39858 WUBlastX LTR_Pao 3543 4478 67 + . . scaffold39858 WUBlastX LTR_Pao 3746 4330 176 + . . scaffold39858 WUBlastX LTR_Pao 4477 4695 106 + . . scaffold39858 WUBlastX LTR_Pao 4694 4768 27 + . . scaffold39858 WUBlastX DNA_Kolobok 9759 9908 77 + . . scaffold39858 WUBlastX DNA_Kolobok 9786 9926 82 + . . scaffold39858 GLEAN mRNA 10188 11366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 10212 10421 92 - . . scaffold39858 WUBlastX DNA_Kolobok 10445 10579 54 - . . scaffold39858 WUBlastX DNA_Kolobok 10708 10965 109 - . . scaffold39858 WUBlastX DNA_Kolobok 11040 11279 60 - . . scaffold39858 WUBlastX DNA_Kolobok 11046 11237 96 - . . scaffold39858 WUBlastX DNA_Kolobok 11319 11447 104 - . . scaffold39858 WUBlastX DNA_Kolobok 11319 11480 102 - . . scaffold39858 GLEAN promoter 11367 12366 1 - . ID=CGI_10003659; scaffold39858 WUBlastX DNA_Kolobok 11578 12072 72 - . . scaffold39858 WUBlastX DNA_Harbinger 33788 33961 100 + . . scaffold39858 WUBlastX LTR_Copia 36870 37010 81 + . . scaffold39858 WUBlastX LTR_Copia 37198 37275 24 + . . scaffold39858 WUBlastX LTR_Copia 37238 37666 121 + . . scaffold39858 TRF Tandem_Repeat 40866 40939 121 + . . scaffold39858 WUBlastX RC_Helitron 46137 46913 33 + . . scaffold39858 WUBlastX RC_Helitron 46341 46889 132 + . . scaffold39858 WUBlastX RC_Helitron 47071 47373 21 + . . scaffold39858 WUBlastX RC_Helitron 47149 47400 65 + . . scaffold39858 TRF Tandem_Repeat 47401 47761 532 + . . scaffold39858 WUBlastX RC_Helitron 47767 49692 974 + . . scaffold39858 WUBlastX RC_Helitron 49688 51361 1059 + . . scaffold39858 WUBlastX RC_Helitron 51355 52287 507 + . . scaffold39858 WUBlastX RC_Helitron 52287 53330 342 + . . scaffold39858 WUBlastX LINE_L2 53244 53423 20 + . . scaffold39858 GLEAN promoter 64424 65423 0.99005 + . ID=CGI_10003660; scaffold39858 GLEAN mRNA 65424 78749 0.99005 + . ID=CGI_10003660; scaffold39858 TRF Tandem_Repeat 71159 71331 301 + . . scaffold39858 TRF Tandem_Repeat 71531 71883 260 + . . scaffold39858 WUBlastX LTR_Pao 72154 72552 94 - . . scaffold39858 WUBlastX LTR_Pao 72154 72459 286 - . . scaffold39858 WUBlastX LTR_Pao 73353 73451 21 - . . scaffold39878 GLEAN promoter 1 169 0.969546 + . ID=CGI_10003641; scaffold39878 GLEAN mRNA 170 26002 0.969546 + . ID=CGI_10003641; scaffold39878 GLEAN promoter 25105 26104 1 + . ID=CGI_10003642; scaffold39878 GLEAN mRNA 26105 34723 1 + . ID=CGI_10003642; scaffold39878 GLEAN mRNA 33757 52157 0.499463 - . ID=CGI_10003643; scaffold39878 GLEAN promoter 52158 53157 0.499463 - . ID=CGI_10003643; scaffold39878 GLEAN promoter 56794 57793 0.999676 + . ID=CGI_10003644; scaffold39878 GLEAN mRNA 57794 58882 0.999676 + . ID=CGI_10003644; scaffold39878 GLEAN promoter 64857 65856 0.999679 + . ID=CGI_10003645; scaffold39878 GLEAN mRNA 65857 74093 0.999679 + . ID=CGI_10003645; scaffold39880 GLEAN mRNA 2840 5425 1 - . ID=CGI_10003670; scaffold39880 GLEAN promoter 5426 6425 1 - . ID=CGI_10003670; scaffold39880 GLEAN mRNA 5728 13538 1 - . ID=CGI_10003671; scaffold39880 TRF Tandem_Repeat 12870 12998 80 + . . scaffold39880 GLEAN promoter 13539 14538 1 - . ID=CGI_10003671; scaffold39880 TRF Tandem_Repeat 19273 19885 726 + . . scaffold39880 TRF Tandem_Repeat 20767 24148 3638 + . . scaffold39880 TRF Tandem_Repeat 20767 24148 3598 + . . scaffold39880 TRF Tandem_Repeat 20767 24150 3592 + . . scaffold39880 TRF Tandem_Repeat 31649 31705 114 + . . scaffold39880 TRF Tandem_Repeat 34212 34385 63 + . . scaffold39880 TRF Tandem_Repeat 35851 35901 102 + . . scaffold39880 TRF Tandem_Repeat 36806 36965 69 + . . scaffold39880 WUBlastX LTR_ERV1 41433 41861 36 + . . scaffold39880 WUBlastX LINE_L2 41553 41918 42 + . . scaffold39880 WUBlastX LINE_L1-Tx1 41818 42249 157 + . . scaffold39880 WUBlastX LINE_L1 41851 42195 183 + . . scaffold39880 WUBlastX LINE_RTE-X 42410 42748 88 + . . scaffold39880 WUBlastX LINE_RTE-X 42714 42893 52 + . . scaffold39880 WUBlastX LINE_RTE-X 42789 42965 54 + . . scaffold39880 WUBlastX LINE_CR1 43016 43300 39 + . . scaffold39880 WUBlastX LINE_L2 43718 44497 75 + . . scaffold39880 WUBlastX LINE_CR1-L2 43892 44488 168 + . . scaffold39880 WUBlastX LINE_L2 44009 44488 188 + . . scaffold39880 WUBlastX LINE_L2 45262 45750 25 + . . scaffold39880 WUBlastX LINE_L2 45358 47433 1134 + . . scaffold39880 WUBlastX LINE_L2 47378 47617 54 + . . scaffold39880 WUBlastX LINE_L2 47538 47825 156 + . . scaffold39880 WUBlastX LINE_Rex-Babar 47610 47900 61 + . . scaffold39880 WUBlastX LINE_LOA 47983 48765 76 + . . scaffold39880 WUBlastX LINE_RTE-X 48106 48777 318 + . . scaffold39880 WUBlastX LINE_RTE-X 48592 48816 149 + . . scaffold39880 WUBlastX LINE_RTE-X 48819 49514 249 + . . scaffold39880 WUBlastX LINE_RTE-X 49561 50076 95 + . . scaffold39880 WUBlastX LINE_RTE-X 49594 50013 131 + . . scaffold39880 WUBlastX LINE_RTE-X 50090 50128 26 + . . scaffold39880 TRF Tandem_Repeat 53227 53265 69 + . . scaffold39880 TRF Tandem_Repeat 62157 62207 102 + . . scaffold39880 GLEAN promoter 62311 63310 0.999612 + . ID=CGI_10003672; scaffold39880 GLEAN mRNA 63311 72869 0.999612 + . ID=CGI_10003672; scaffold39880 TRF Tandem_Repeat 64421 64487 80 + . . scaffold39880 TRF Tandem_Repeat 67472 67509 58 + . . scaffold39880 TRF Tandem_Repeat 71140 71178 78 + . . scaffold39880 GLEAN promoter 74727 75726 1 + . ID=CGI_10003673; scaffold39880 GLEAN mRNA 75727 76248 1 + . ID=CGI_10003673; scaffold39884 GLEAN mRNA 4946 8276 0.648556 - . ID=CGI_10003634; scaffold39884 GLEAN promoter 8277 9276 0.648556 - . ID=CGI_10003634; scaffold39884 GLEAN mRNA 12744 21921 0.728787 - . ID=CGI_10003635; scaffold39884 GLEAN promoter 21922 22921 0.728787 - . ID=CGI_10003635; scaffold39884 GLEAN mRNA 29329 29763 0.930724 - . ID=CGI_10003636; scaffold39884 GLEAN promoter 29764 30763 0.930724 - . ID=CGI_10003636; scaffold39884 GLEAN mRNA 37781 73627 0.992337 - . ID=CGI_10003637; scaffold39884 GLEAN promoter 73628 74627 0.992337 - . ID=CGI_10003637; scaffold39884 GLEAN mRNA 76264 77551 1 - . ID=CGI_10003638; scaffold39884 GLEAN promoter 77552 78551 1 - . ID=CGI_10003638; scaffold39894 GLEAN mRNA 41 15931 0.999351 - . ID=CGI_10003655; scaffold39894 GLEAN promoter 15932 16931 0.999351 - . ID=CGI_10003655; scaffold39894 GLEAN promoter 28776 29775 0.593367 + . ID=CGI_10003656; scaffold39894 GLEAN mRNA 29776 33599 0.593367 + . ID=CGI_10003656; scaffold39894 GLEAN mRNA 37452 53548 0.999675 - . ID=CGI_10003657; scaffold39894 GLEAN promoter 53549 54548 0.999675 - . ID=CGI_10003657; scaffold39894 GLEAN promoter 59655 60654 0.814113 + . ID=CGI_10003658; scaffold39894 GLEAN mRNA 60655 77124 0.814113 + . ID=CGI_10003658; scaffold399 GLEAN promoter 738 1737 0.999795 + . ID=CGI_10009280; scaffold399 GLEAN mRNA 1738 36362 0.999795 + . ID=CGI_10009280; scaffold399 TRF Tandem_Repeat 3157 3283 188 + . . scaffold399 TRF Tandem_Repeat 16377 16428 104 + . . scaffold399 TRF Tandem_Repeat 16426 16464 69 + . . scaffold399 TRF Tandem_Repeat 20655 21756 1246 + . . scaffold399 TRF Tandem_Repeat 21925 21967 59 + . . scaffold399 TRF Tandem_Repeat 32034 32087 99 + . . scaffold399 GLEAN promoter 35461 36460 0.999654 + . ID=CGI_10009281; scaffold399 GLEAN mRNA 36461 60856 0.999654 + . ID=CGI_10009281; scaffold399 TRF Tandem_Repeat 37748 37823 145 + . . scaffold399 TRF Tandem_Repeat 46365 46406 50 + . . scaffold399 TRF Tandem_Repeat 51376 51426 102 + . . scaffold399 TRF Tandem_Repeat 51520 52211 1002 + . . scaffold399 GLEAN promoter 60435 61434 0.999062 + . ID=CGI_10009282; scaffold399 GLEAN mRNA 61435 71798 0.999062 + . ID=CGI_10009282; scaffold399 TRF Tandem_Repeat 70067 70135 86 + . . scaffold399 GLEAN promoter 71170 72169 0.999481 + . ID=CGI_10009283; scaffold399 GLEAN mRNA 72170 80472 0.999481 + . ID=CGI_10009283; scaffold399 TRF Tandem_Repeat 72689 72720 57 + . . scaffold399 TRF Tandem_Repeat 72966 73000 52 + . . scaffold399 TRF Tandem_Repeat 73014 73664 856 + . . scaffold399 GLEAN promoter 80604 81603 0.99911 + . ID=CGI_10009284; scaffold399 GLEAN mRNA 81604 100577 0.99911 + . ID=CGI_10009284; scaffold399 GLEAN mRNA 102553 118977 0.443607 - . ID=CGI_10009285; scaffold399 TRF Tandem_Repeat 106899 107095 286 + . . scaffold399 TRF Tandem_Repeat 115252 115277 52 + . . scaffold399 TRF Tandem_Repeat 115797 115854 116 + . . scaffold399 GLEAN promoter 118978 119977 0.443607 - . ID=CGI_10009285; scaffold399 GLEAN promoter 119831 120830 0.999996 + . ID=CGI_10009286; scaffold399 GLEAN mRNA 120831 127763 0.999996 + . ID=CGI_10009286; scaffold399 TRF Tandem_Repeat 125995 126031 74 + . . scaffold399 TRF Tandem_Repeat 169216 169264 89 + . . scaffold399 GLEAN promoter 169860 170859 0.999414 + . ID=CGI_10009287; scaffold399 GLEAN mRNA 170860 172896 0.999414 + . ID=CGI_10009287; scaffold399 TRF Tandem_Repeat 171380 171430 57 + . . scaffold399 TRF Tandem_Repeat 171384 171466 67 + . . scaffold399 TRF Tandem_Repeat 171428 171476 98 + . . scaffold399 WUBlastX LINE_L1-Tx1 173300 175264 914 - . . scaffold399 WUBlastX DNA_TcMar-Tc1 178449 178577 44 - . . scaffold399 WUBlastX DNA_TcMar-Tc1 178583 178939 91 - . . scaffold399 WUBlastX LINE_L1-Tx1 189461 189667 51 - . . scaffold399 GLEAN promoter 196062 197061 0.999994 + . ID=CGI_10009288; scaffold399 TRF Tandem_Repeat 196071 196117 76 + . . scaffold399 TRF Tandem_Repeat 196391 196449 118 + . . scaffold399 GLEAN mRNA 197062 198549 0.999994 + . ID=CGI_10009288; scaffold399 WUBlastX LINE_L1-Tx1 201177 201491 50 - . . scaffold399 WUBlastX LINE_L1-Tx1 201213 201434 93 - . . scaffold399 WUBlastX LINE_Penelope 202464 202808 40 - . . scaffold399 GLEAN promoter 210507 211506 0.999351 + . ID=CGI_10009289; scaffold399 GLEAN mRNA 211507 220094 0.999351 + . ID=CGI_10009289; scaffold399 WUBlastX LINE_DRE 218859 219356 24 + . . scaffold399 GLEAN mRNA 221870 226361 0.92054 - . ID=CGI_10009290; scaffold399 GLEAN promoter 226362 227361 0.92054 - . ID=CGI_10009290; scaffold399 TRF Tandem_Repeat 227729 227770 84 + . . scaffold39900 WUBlastX LINE_CR1 5069 5122 23 + . . scaffold39900 WUBlastX LINE_CR1 5759 6082 38 + . . scaffold39900 WUBlastX LINE_L2 5861 6370 35 + . . scaffold39900 WUBlastX LINE_CR1 5861 6169 59 + . . scaffold39900 WUBlastX LINE_CR1 5861 6082 79 + . . scaffold39900 TRF Tandem_Repeat 33937 34199 246 + . . scaffold39900 TRF Tandem_Repeat 36136 36235 101 + . . scaffold39900 TRF Tandem_Repeat 36311 36860 276 + . . scaffold39900 TRF Tandem_Repeat 38850 38984 146 + . . scaffold39900 WUBlastX DNA_En-Spm 39188 39460 64 - . . scaffold39900 WUBlastX LTR_ERV1 44254 44976 50 + . . scaffold39900 WUBlastX LTR_Gypsy 44383 44886 54 + . . scaffold39900 WUBlastX LTR_Gypsy 44509 45054 360 + . . scaffold39900 WUBlastX LTR_Gypsy 45041 45274 48 + . . scaffold39900 WUBlastX LTR_Gypsy 45197 45421 52 + . . scaffold39900 WUBlastX LTR_Gypsy 45565 45807 104 + . . scaffold39900 WUBlastX LTR_Gypsy 45774 46115 192 + . . scaffold39900 WUBlastX LTR_Gypsy 46114 46215 69 + . . scaffold39900 WUBlastX LTR_Gypsy 46235 46342 44 + . . scaffold39900 WUBlastX LTR_Gypsy 46320 46523 105 + . . scaffold39900 WUBlastX LTR_Gypsy 46528 47982 1372 + . . scaffold39900 WUBlastX LTR_Gypsy 47912 48787 802 + . . scaffold39900 WUBlastX LTR_Gypsy 48784 49248 344 + . . scaffold39900 WUBlastX LTR_Gypsy 49212 49388 31 + . . scaffold39900 GLEAN promoter 49346 50345 0.999984 + . ID=CGI_10003679; scaffold39900 GLEAN mRNA 50346 50612 0.999984 + . ID=CGI_10003679; scaffold39900 GLEAN mRNA 53549 54274 0.456972 - . ID=CGI_10003680; scaffold39900 GLEAN promoter 53561 54560 0.747146 + . ID=CGI_10003681; scaffold39900 WUBlastX LTR_ERV1 53768 54031 24 - . . scaffold39900 GLEAN promoter 54275 55274 0.456972 - . ID=CGI_10003680; scaffold39900 GLEAN mRNA 54561 54980 0.747146 + . ID=CGI_10003681; scaffold39900 GLEAN promoter 54751 55750 0.997171 + . ID=CGI_10003682; scaffold39900 GLEAN mRNA 55751 56777 0.997171 + . ID=CGI_10003682; scaffold39900 GLEAN promoter 57292 58291 0.98985 + . ID=CGI_10003683; scaffold39900 WUBlastX DNA_Maverick 57308 57910 375 + . . scaffold39900 GLEAN mRNA 58292 58876 0.98985 + . ID=CGI_10003683; scaffold39900 WUBlastX DNA_Maverick 59454 60206 106 + . . scaffold39900 WUBlastX DNA_Maverick 59460 60041 175 + . . scaffold39900 WUBlastX DNA_Maverick 60275 61318 710 + . . scaffold39900 WUBlastX DNA_Maverick 62416 62760 97 + . . scaffold39900 GLEAN promoter 62800 63799 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 63029 63412 92 + . . scaffold39900 WUBlastX DNA_Maverick 63104 63421 108 + . . scaffold39900 WUBlastX DNA_Maverick 63146 63412 140 + . . scaffold39900 GLEAN mRNA 63800 72994 0.885101 + . ID=CGI_10003685; scaffold39900 WUBlastX DNA_Maverick 64804 65271 287 + . . scaffold39900 WUBlastX DNA_Maverick 64855 65370 162 + . . scaffold39900 WUBlastX DNA_Maverick 65377 65436 31 + . . scaffold39900 WUBlastX DNA_Maverick 65392 65436 33 + . . scaffold39900 WUBlastX DNA_Maverick 65436 66224 433 + . . scaffold39900 WUBlastX DNA_Maverick 66223 66678 173 + . . scaffold39900 TRF Tandem_Repeat 67240 67286 53 + . . scaffold39900 WUBlastX DNA_Maverick 67619 69724 1279 - . . scaffold39900 WUBlastX DNA_Maverick 69640 70179 369 - . . scaffold39900 WUBlastX DNA_Maverick 69640 70800 191 - . . scaffold39900 WUBlastX DNA_Maverick 70836 71288 110 - . . scaffold39900 TRF Tandem_Repeat 80440 80537 160 + . . scaffold39946 TRF Tandem_Repeat 1170 1225 112 + . . scaffold39946 GLEAN mRNA 4420 5010 0.618186 - . ID=CGI_10003710; scaffold39946 GLEAN promoter 5011 6010 0.618186 - . ID=CGI_10003710; scaffold39946 TRF Tandem_Repeat 20838 20928 182 + . . scaffold39946 TRF Tandem_Repeat 22051 22100 91 + . . scaffold39946 WUBlastX DNA_hAT-Tip100 27759 27920 82 + . . scaffold39946 TRF Tandem_Repeat 38975 39153 214 + . . scaffold39946 TRF Tandem_Repeat 40360 40405 92 + . . scaffold39946 WUBlastX LINE_L2 48502 49332 42 + . . scaffold39946 WUBlastX LINE_RTE-X 48646 49926 473 + . . scaffold39946 TRF Tandem_Repeat 51241 51351 137 + . . scaffold39946 TRF Tandem_Repeat 53336 53375 80 + . . scaffold39946 TRF Tandem_Repeat 55580 55639 120 + . . scaffold39946 TRF Tandem_Repeat 65591 65649 118 + . . scaffold39946 GLEAN promoter 78244 79243 1 + . ID=CGI_10003711; scaffold39946 GLEAN mRNA 79244 81524 1 + . ID=CGI_10003711; scaffold39958 GLEAN promoter 8439 9438 0.992149 + . ID=CGI_10003716; scaffold39958 GLEAN mRNA 9439 15343 0.992149 + . ID=CGI_10003716; scaffold39958 TRF Tandem_Repeat 11817 11853 74 + . . scaffold39958 TRF Tandem_Repeat 12156 12182 54 + . . scaffold39958 TRF Tandem_Repeat 17809 17904 81 + . . scaffold39958 GLEAN promoter 18084 19083 0.610397 + . ID=CGI_10003717; scaffold39958 GLEAN mRNA 19084 25413 0.610397 + . ID=CGI_10003717; scaffold39958 TRF Tandem_Repeat 20249 20331 112 + . . scaffold39958 TRF Tandem_Repeat 47769 47803 70 + . . scaffold39958 GLEAN promoter 49431 50430 0.994425 + . ID=CGI_10003718; scaffold39958 GLEAN mRNA 50431 66155 0.994425 + . ID=CGI_10003718; scaffold39958 TRF Tandem_Repeat 56411 56549 144 + . . scaffold39958 TRF Tandem_Repeat 57185 57386 170 + . . scaffold39958 TRF Tandem_Repeat 57193 57624 428 + . . scaffold39958 TRF Tandem_Repeat 57214 57380 160 + . . scaffold39958 TRF Tandem_Repeat 57449 57622 168 + . . scaffold39958 TRF Tandem_Repeat 63908 63955 96 + . . scaffold39958 TRF Tandem_Repeat 66344 66387 88 + . . scaffold39958 WUBlastX LINE_L1-Tx1 81450 81968 135 - . . scaffold39960 TRF Tandem_Repeat 11608 11633 52 + . . scaffold39960 GLEAN mRNA 12144 18614 0.993654 - . ID=CGI_10003753; scaffold39960 GLEAN promoter 18615 19614 0.993654 - . ID=CGI_10003753; scaffold39960 GLEAN mRNA 20446 21003 0.999372 - . ID=CGI_10003754; scaffold39960 GLEAN promoter 21004 22003 0.999372 - . ID=CGI_10003754; scaffold39960 WUBlastX LTR_Gypsy 21097 22677 473 - . . scaffold39960 WUBlastX LTR_Gypsy-Cigr 21349 24171 1951 - . . scaffold39960 WUBlastX LTR_Gypsy 21391 24711 1780 - . . scaffold39960 WUBlastX LTR_Gypsy 22738 25086 717 - . . scaffold39960 WUBlastX LTR_Gypsy 24979 25749 171 - . . scaffold39960 WUBlastX LTR_Gypsy-Cigr 25228 25764 201 - . . scaffold39960 GLEAN promoter 30291 31290 0.276038 + . ID=CGI_10003755; scaffold39960 GLEAN mRNA 31291 48043 0.276038 + . ID=CGI_10003755; scaffold39960 GLEAN mRNA 38480 41188 0.999339 - . ID=CGI_10003756; scaffold39960 GLEAN promoter 41189 42188 0.999339 - . ID=CGI_10003756; scaffold39960 TRF Tandem_Repeat 42508 42552 81 + . . scaffold39960 TRF Tandem_Repeat 42809 43474 1059 + . . scaffold39960 TRF Tandem_Repeat 44659 44688 60 + . . scaffold39960 GLEAN mRNA 49304 49786 0.998379 - . ID=CGI_10003757; scaffold39960 GLEAN promoter 49787 50786 0.998379 - . ID=CGI_10003757; scaffold39960 WUBlastX LTR_Gypsy 49820 50542 34 - . . scaffold39960 WUBlastX LTR_Gypsy-Cigr 49958 50530 106 - . . scaffold39960 WUBlastX LTR_Gypsy-Cigr 50072 50545 134 - . . scaffold39960 WUBlastX LTR_Gypsy 50219 50746 74 - . . scaffold39960 GLEAN promoter 52974 53973 0.999675 + . ID=CGI_10003758; scaffold39960 GLEAN mRNA 53974 64597 0.999675 + . ID=CGI_10003758; scaffold39960 TRF Tandem_Repeat 62168 62299 52 + . . scaffold39960 TRF Tandem_Repeat 62226 62376 74 + . . scaffold39960 TRF Tandem_Repeat 71986 72097 93 + . . scaffold39960 TRF Tandem_Repeat 72630 73213 243 + . . scaffold39960 TRF Tandem_Repeat 72630 73219 285 + . . scaffold39960 TRF Tandem_Repeat 72810 73225 357 + . . scaffold39960 WUBlastX LINE_L1 81803 82405 42 + . . scaffold39960 WUBlastX LINE_L2 81932 82594 124 + . . scaffold39966 WUBlastX RC_Helitron 3151 3408 81 - . . scaffold39966 WUBlastX RC_Helitron 3190 3600 127 - . . scaffold39966 WUBlastX RC_Helitron 3214 3900 121 - . . scaffold39966 WUBlastX DNA_Helitron 3505 3987 95 - . . scaffold39966 GLEAN promoter 4670 5669 0.999675 + . ID=CGI_10003724; scaffold39966 GLEAN mRNA 5670 20559 0.999675 + . ID=CGI_10003724; scaffold39966 WUBlastX DNA_Zator 7739 8734 131 + . . scaffold39966 WUBlastX LTR_Gypsy 8979 9344 187 + . . scaffold39966 WUBlastX LTR_Gypsy 9346 10857 484 + . . scaffold39966 WUBlastX LTR_Gypsy 10854 10925 20 + . . scaffold39966 WUBlastX LTR_Gypsy 10875 11567 499 + . . scaffold39966 WUBlastX LTR_Gypsy 11591 11959 223 + . . scaffold39966 WUBlastX LTR_Gypsy 11591 12058 85 + . . scaffold39966 TRF Tandem_Repeat 17836 17869 59 + . . scaffold39966 TRF Tandem_Repeat 18505 18534 60 + . . scaffold39966 GLEAN promoter 20016 21015 1 + . ID=CGI_10003725; scaffold39966 GLEAN mRNA 21016 21619 1 + . ID=CGI_10003725; scaffold39966 WUBlastX DNA_IS4EU 23811 24014 21 + . . scaffold39966 WUBlastX DNA_IS4EU 24032 24244 43 + . . scaffold39966 WUBlastX DNA_IS4EU 25227 25325 74 - . . scaffold39966 TRF Tandem_Repeat 29359 29420 124 + . . scaffold39966 GLEAN mRNA 35939 37306 0.575455 - . ID=CGI_10003726; scaffold39966 GLEAN promoter 37307 38306 0.575455 - . ID=CGI_10003726; scaffold39966 TRF Tandem_Repeat 43085 43129 90 + . . scaffold39966 TRF Tandem_Repeat 48022 48075 83 + . . scaffold39966 TRF Tandem_Repeat 48022 48075 65 + . . scaffold39966 TRF Tandem_Repeat 48025 48072 69 + . . scaffold39966 WUBlastX LTR_Gypsy 55197 55670 32 - . . scaffold39966 WUBlastX LTR_Gypsy 55308 55670 104 - . . scaffold39966 WUBlastX LTR_Gypsy 55434 55670 203 - . . scaffold39966 WUBlastX LTR_Gypsy 55526 56326 314 - . . scaffold39966 WUBlastX LTR_Gypsy 55676 56323 449 - . . scaffold39966 WUBlastX LTR_Gypsy 57060 57521 31 - . . scaffold39966 WUBlastX LTR_Gypsy 57156 57533 53 - . . scaffold39966 WUBlastX LTR_Gypsy 57315 57536 95 - . . scaffold39966 WUBlastX LTR_Gypsy 57351 57536 147 - . . scaffold39966 WUBlastX LTR_Gypsy 57351 57578 107 - . . scaffold39966 WUBlastX LTR_Gypsy 57357 57821 96 - . . scaffold39966 WUBlastX LTR_Gypsy 57787 58002 26 - . . scaffold39966 WUBlastX LTR_Gypsy 57898 58035 26 - . . scaffold39966 WUBlastX LTR_Gypsy 57996 58460 35 - . . scaffold39966 WUBlastX LTR_Gypsy 58590 58757 24 - . . scaffold39966 WUBlastX LTR_Gypsy 58656 58775 33 - . . scaffold39966 WUBlastX LTR_Gypsy 58771 59646 174 - . . scaffold39966 TRF Tandem_Repeat 63866 64042 176 + . . scaffold39966 TRF Tandem_Repeat 68169 68223 110 + . . scaffold39966 TRF Tandem_Repeat 71096 71134 78 + . . scaffold39966 TRF Tandem_Repeat 71586 71653 118 + . . scaffold39966 WUBlastX LINE_RTE-BovB 76141 76782 110 - . . scaffold39966 WUBlastX LINE_RTE-BovB 76354 76782 130 - . . scaffold39972 TRF Tandem_Repeat 4073 4139 134 + . . scaffold39972 GLEAN mRNA 8239 9387 0.974338 - . ID=CGI_10003706; scaffold39972 GLEAN promoter 9388 10387 0.974338 - . ID=CGI_10003706; scaffold39972 TRF Tandem_Repeat 11811 12683 1040 + . . scaffold39972 TRF Tandem_Repeat 24905 26570 2645 + . . scaffold39972 TRF Tandem_Repeat 26768 26870 161 + . . scaffold39972 WUBlastX LINE_L1-Tx1 27434 27730 35 + . . scaffold39972 GLEAN promoter 28349 29348 0.901153 + . ID=CGI_10003707; scaffold39972 GLEAN mRNA 29349 35217 0.901153 + . ID=CGI_10003707; scaffold39972 GLEAN promoter 34765 35764 0.995966 + . ID=CGI_10003708; scaffold39972 GLEAN mRNA 35765 49275 0.995966 + . ID=CGI_10003708; scaffold39972 WUBlastX LINE_RTE-X 39460 39948 38 + . . scaffold39972 WUBlastX LINE_L1 40444 41259 409 + . . scaffold39972 WUBlastX LINE_L1-Tx1 41235 41378 68 + . . scaffold39972 WUBlastX LINE_L1 41324 41785 116 + . . scaffold39972 WUBlastX LINE_L1 41384 41911 93 + . . scaffold39972 WUBlastX LINE_L1-Tx1 41405 41797 173 + . . scaffold39972 WUBlastX LINE_L1 42046 42297 29 + . . scaffold39972 GLEAN promoter 48348 49347 0.885383 + . ID=CGI_10003709; scaffold39972 GLEAN mRNA 49348 55126 0.885383 + . ID=CGI_10003709; scaffold39972 TRF Tandem_Repeat 49856 49901 92 + . . scaffold39972 WUBlastX LTR_Gypsy 52459 52974 188 - . . scaffold39972 WUBlastX LTR_Gypsy 52567 52959 194 - . . scaffold39972 WUBlastX LTR_Gypsy 53067 53375 39 - . . scaffold39972 WUBlastX LTR_Gypsy 53282 53539 49 - . . scaffold39972 WUBlastX LTR_Gypsy 53422 53775 67 - . . scaffold39972 WUBlastX LTR_Gypsy 53536 53775 155 - . . scaffold39972 TRF Tandem_Repeat 56286 56310 50 + . . scaffold39972 TRF Tandem_Repeat 65547 65613 73 + . . scaffold39972 TRF Tandem_Repeat 65547 65613 62 + . . scaffold39972 TRF Tandem_Repeat 67478 67528 102 + . . scaffold39972 TRF Tandem_Repeat 67717 67765 98 + . . scaffold39972 TRF Tandem_Repeat 67763 67794 64 + . . scaffold39972 TRF Tandem_Repeat 68288 68354 71 + . . scaffold39972 TRF Tandem_Repeat 72920 74562 1328 + . . scaffold39972 TRF Tandem_Repeat 73825 74562 503 + . . scaffold39972 WUBlastX DNA_TcMar-Marin 75715 76002 42 - . . scaffold39972 WUBlastX DNA_TcMar-Marin 76013 76078 22 - . . scaffold39972 TRF Tandem_Repeat 77857 77911 110 + . . scaffold39974 WUBlastX DNA_IS4EU 6186 6503 51 - . . scaffold39974 TRF Tandem_Repeat 6948 7067 152 + . . scaffold39974 TRF Tandem_Repeat 7838 7886 98 + . . scaffold39974 TRF Tandem_Repeat 32698 32751 81 + . . scaffold39974 GLEAN mRNA 39443 47561 0.998023 - . ID=CGI_10003759; scaffold39974 GLEAN promoter 47562 48561 0.998023 - . ID=CGI_10003759; scaffold39974 WUBlastX LTR_Ngaro 65498 66418 598 + . . scaffold39974 WUBlastX LTR_Ngaro 66325 67329 478 + . . scaffold39974 GLEAN promoter 66732 67731 0.969362 + . ID=CGI_10003760; scaffold39974 WUBlastX LINE_RTE-X 67579 67989 49 + . . scaffold39974 GLEAN mRNA 67732 80297 0.969362 + . ID=CGI_10003760; scaffold39974 WUBlastX LTR_Ngaro 68959 69642 147 + . . scaffold39974 WUBlastX LTR_Ngaro 69172 69630 149 + . . scaffold39974 WUBlastX LTR_Ngaro 69202 69807 106 + . . scaffold39974 WUBlastX LTR_Ngaro 69863 70363 346 + . . scaffold39976 TRF Tandem_Repeat 19069 19123 110 + . . scaffold39976 WUBlastX LINE_RTE-BovB 20997 21356 47 + . . scaffold39976 WUBlastX LINE_RTE-BovB 21024 21275 73 + . . scaffold39976 TRF Tandem_Repeat 40912 41014 170 + . . scaffold39976 TRF Tandem_Repeat 40912 41031 127 + . . scaffold39976 TRF Tandem_Repeat 43410 43454 90 + . . scaffold39976 WUBlastX LTR_Pao 44911 45195 27 + . . scaffold39976 WUBlastX LTR_Pao 45019 45186 59 + . . scaffold39976 WUBlastX LTR_Pao 45054 45950 223 + . . scaffold39976 WUBlastX LTR_Pao 45201 45941 468 + . . scaffold39976 WUBlastX LTR_Pao 45940 47553 708 + . . scaffold39976 WUBlastX LTR_Pao 47544 47696 69 + . . scaffold39976 TRF Tandem_Repeat 54161 54205 90 + . . scaffold39976 TRF Tandem_Repeat 55165 55220 105 + . . scaffold39976 GLEAN mRNA 60218 82104 0.546253 - . ID=CGI_10003749; scaffold39976 TRF Tandem_Repeat 61073 62582 1824 + . . scaffold39976 TRF Tandem_Repeat 61074 62582 1798 + . . scaffold39976 TRF Tandem_Repeat 78238 78271 52 + . . scaffold39976 GLEAN promoter 82105 82570 0.546253 - . ID=CGI_10003749; scaffold39984 GLEAN promoter 511 1510 0.276816 + . ID=CGI_10003780; scaffold39984 GLEAN mRNA 1511 22720 0.276816 + . ID=CGI_10003780; scaffold39986 TRF Tandem_Repeat 13932 13985 108 + . . scaffold39986 TRF Tandem_Repeat 17269 17318 75 + . . scaffold39986 TRF Tandem_Repeat 17692 17742 102 + . . scaffold39986 TRF Tandem_Repeat 19202 19266 112 + . . scaffold39986 TRF Tandem_Repeat 36271 36328 116 + . . scaffold39986 TRF Tandem_Repeat 38799 38905 124 + . . scaffold39986 TRF Tandem_Repeat 40436 40547 143 + . . scaffold39986 TRF Tandem_Repeat 51080 51117 76 + . . scaffold39986 TRF Tandem_Repeat 54480 54549 96 + . . scaffold39986 TRF Tandem_Repeat 54481 54546 80 + . . scaffold39986 TRF Tandem_Repeat 55770 57022 1775 + . . scaffold39986 GLEAN promoter 58647 59646 0.946057 + . ID=CGI_10003769; scaffold39986 GLEAN mRNA 59647 62156 0.946057 + . ID=CGI_10003769; scaffold39986 WUBlastX LINE_RTE-X 62479 62832 47 - . . scaffold39986 WUBlastX LINE_RTE-X 62569 62862 51 - . . scaffold39986 WUBlastX LINE_RTE-X 62635 63831 153 - . . scaffold39986 WUBlastX LINE_RTE-X 63166 63714 168 - . . scaffold39986 WUBlastX LINE_RTE-BovB 63834 64151 28 - . . scaffold39986 WUBlastX LINE_RTE-BovB 63834 64052 29 - . . scaffold39986 WUBlastX LINE_RTE-X 63840 63968 49 - . . scaffold39986 WUBlastX LINE_RTE-BovB 63840 64022 43 - . . scaffold39986 TRF Tandem_Repeat 66407 67389 1346 + . . scaffold39986 WUBlastX LINE_CR1 67537 67659 22 - . . scaffold39986 WUBlastX LINE_L2 67564 67659 63 - . . scaffold39986 WUBlastX LINE_RTE-X 67661 68011 89 - . . scaffold39986 WUBlastX LINE_RTE-X 67661 67798 91 - . . scaffold39986 WUBlastX LINE_RTE-X 67688 68095 66 - . . scaffold39986 TRF Tandem_Repeat 69384 69435 50 + . . scaffold39986 TRF Tandem_Repeat 69604 71759 2260 + . . scaffold39986 GLEAN promoter 71847 72846 1 + . ID=CGI_10003770; scaffold39986 GLEAN mRNA 72847 75232 1 + . ID=CGI_10003770; scaffold39990 GLEAN promoter 9476 10475 0.999162 + . ID=CGI_10003761; scaffold39990 GLEAN mRNA 10476 10688 0.999162 + . ID=CGI_10003761; scaffold39990 GLEAN promoter 17294 18293 0.621505 + . ID=CGI_10003762; scaffold39990 GLEAN mRNA 18294 23357 0.621505 + . ID=CGI_10003762; scaffold39990 GLEAN mRNA 29177 33268 0.651135 - . ID=CGI_10003763; scaffold39990 GLEAN promoter 33269 34268 0.651135 - . ID=CGI_10003763; scaffold39990 GLEAN promoter 34032 35031 1 + . ID=CGI_10003764; scaffold39990 GLEAN mRNA 35032 35616 1 + . ID=CGI_10003764; scaffold39990 GLEAN promoter 43838 44837 1 + . ID=CGI_10003765; scaffold39990 GLEAN mRNA 44838 47528 1 + . ID=CGI_10003765; scaffold39990 GLEAN mRNA 65206 70666 1 - . ID=CGI_10003766; scaffold39990 GLEAN promoter 70667 71666 1 - . ID=CGI_10003766; scaffold39990 GLEAN mRNA 75873 80533 1 - . ID=CGI_10003767; scaffold39990 GLEAN promoter 80534 81533 1 - . ID=CGI_10003767; scaffold39990 GLEAN mRNA 81332 81655 0.777737 - . ID=CGI_10003768; scaffold39990 GLEAN promoter 81656 82655 0.777737 - . ID=CGI_10003768; scaffold39998 WUBlastX DNA_hAT-Tip100 1495 1857 98 - . . scaffold39998 GLEAN mRNA 3055 4191 0.558391 - . ID=CGI_10003750; scaffold39998 GLEAN promoter 4192 5191 0.558391 - . ID=CGI_10003750; scaffold39998 WUBlastX LTR_Gypsy 5295 9287 2756 + . . scaffold39998 TRF Tandem_Repeat 11636 11679 88 + . . scaffold39998 TRF Tandem_Repeat 14099 14160 124 + . . scaffold39998 TRF Tandem_Repeat 21082 21143 124 + . . scaffold39998 TRF Tandem_Repeat 24808 24846 78 + . . scaffold39998 TRF Tandem_Repeat 32846 32899 108 + . . scaffold39998 TRF Tandem_Repeat 36729 36770 84 + . . scaffold39998 TRF Tandem_Repeat 40931 40956 52 + . . scaffold39998 GLEAN promoter 45273 46272 0.893806 + . ID=CGI_10003751; scaffold39998 GLEAN mRNA 46273 53247 0.893806 + . ID=CGI_10003751; scaffold39998 TRF Tandem_Repeat 47610 47658 82 + . . scaffold39998 TRF Tandem_Repeat 51816 51873 116 + . . scaffold39998 TRF Tandem_Repeat 52904 53083 351 + . . scaffold39998 TRF Tandem_Repeat 53619 53681 126 + . . scaffold39998 GLEAN promoter 55334 56333 0.841347 + . ID=CGI_10003752; scaffold39998 GLEAN mRNA 56334 71008 0.841347 + . ID=CGI_10003752; scaffold39998 TRF Tandem_Repeat 59081 59138 109 + . . scaffold39998 TRF Tandem_Repeat 70201 70251 66 + . . scaffold39998 TRF Tandem_Repeat 81848 81887 80 + . . scaffold39998 TRF Tandem_Repeat 82621 82663 77 + . . scaffold4 GLEAN mRNA 361 1237 0.999743 - . ID=CGI_10021155; scaffold4 GLEAN promoter 1238 2237 0.999743 - . ID=CGI_10021155; scaffold4 TRF Tandem_Repeat 4518 4594 154 + . . scaffold4 TRF Tandem_Repeat 5859 5935 63 + . . scaffold4 GLEAN promoter 7863 8862 1 + . ID=CGI_10021156; scaffold4 GLEAN mRNA 8863 12706 1 + . ID=CGI_10021156; scaffold4 GLEAN mRNA 13851 24421 0.759338 - . ID=CGI_10021157; scaffold4 GLEAN promoter 23571 24570 0.999376 + . ID=CGI_10021158; scaffold4 GLEAN promoter 24422 25421 0.759338 - . ID=CGI_10021157; scaffold4 GLEAN mRNA 24571 26669 0.999376 + . ID=CGI_10021158; scaffold4 GLEAN mRNA 27533 29037 0.999323 - . ID=CGI_10021159; scaffold4 GLEAN promoter 29038 30037 0.999323 - . ID=CGI_10021159; scaffold4 GLEAN mRNA 31337 31858 0.999984 - . ID=CGI_10021160; scaffold4 GLEAN promoter 31859 32858 0.999984 - . ID=CGI_10021160; scaffold4 TRF Tandem_Repeat 34144 34265 65 + . . scaffold4 TRF Tandem_Repeat 34285 34328 52 + . . scaffold4 TRF Tandem_Repeat 37843 37879 56 + . . scaffold4 WUBlastX LINE_RTE-BovB 37963 38778 592 - . . scaffold4 WUBlastX LINE_RTE-BovB 38775 39335 677 - . . scaffold4 WUBlastX LINE_RTE-BovB 39367 40395 778 - . . scaffold4 WUBlastX LINE_RTE-BovB 40150 40449 85 - . . scaffold4 GLEAN promoter 41612 42611 0.999937 + . ID=CGI_10021161; scaffold4 GLEAN mRNA 42612 56029 0.999937 + . ID=CGI_10021161; scaffold4 WUBlastX LINE_RTE-X 48228 48368 67 + . . scaffold4 TRF Tandem_Repeat 48998 49158 126 + . . scaffold4 TRF Tandem_Repeat 50383 50425 86 + . . scaffold4 WUBlastX LINE_RTE-X 53470 53664 37 - . . scaffold4 TRF Tandem_Repeat 58049 58247 249 + . . scaffold4 GLEAN mRNA 60422 62136 1 - . ID=CGI_10021162; scaffold4 GLEAN promoter 62137 63136 1 - . ID=CGI_10021162; scaffold4 GLEAN promoter 64110 65109 0.813891 + . ID=CGI_10021163; scaffold4 GLEAN mRNA 65110 80628 0.813891 + . ID=CGI_10021163; scaffold4 TRF Tandem_Repeat 68360 68503 130 + . . scaffold4 TRF Tandem_Repeat 68379 68521 105 + . . scaffold4 TRF Tandem_Repeat 75691 76400 1197 + . . scaffold4 TRF Tandem_Repeat 76734 76825 96 + . . scaffold4 TRF Tandem_Repeat 76847 77012 168 + . . scaffold4 GLEAN mRNA 85995 96261 0.999414 - . ID=CGI_10021164; scaffold4 TRF Tandem_Repeat 88167 88218 104 + . . scaffold4 GLEAN promoter 96262 97261 0.999414 - . ID=CGI_10021164; scaffold4 WUBlastX LINE_RTE-X 98138 98926 145 + . . scaffold4 WUBlastX LINE_RTE-X 98291 99037 190 + . . scaffold4 GLEAN promoter 100138 101137 1 + . ID=CGI_10021165; scaffold4 GLEAN mRNA 101138 107093 1 + . ID=CGI_10021165; scaffold4 WUBlastX LINE_CR1 110630 110728 20 + . . scaffold4 WUBlastX LINE_CR1 111532 111783 86 + . . scaffold4 GLEAN promoter 112821 113820 1 + . ID=CGI_10021166; scaffold4 GLEAN mRNA 113821 114303 1 + . ID=CGI_10021166; scaffold4 GLEAN promoter 115147 116146 1 + . ID=CGI_10021167; scaffold4 GLEAN promoter 115664 116663 1 + . ID=CGI_10021168; scaffold4 GLEAN mRNA 116147 116389 1 + . ID=CGI_10021167; scaffold4 GLEAN mRNA 116664 117356 1 + . ID=CGI_10021168; scaffold4 GLEAN promoter 122567 123566 0.999296 + . ID=CGI_10021169; scaffold4 GLEAN mRNA 123567 140996 0.999296 + . ID=CGI_10021169; scaffold4 TRF Tandem_Repeat 138204 138238 70 + . . scaffold4 GLEAN mRNA 155258 160967 0.734569 - . ID=CGI_10021170; scaffold4 GLEAN promoter 160968 161967 0.734569 - . ID=CGI_10021170; scaffold4 TRF Tandem_Repeat 165623 165668 92 + . . scaffold4 WUBlastX LINE_L2 166239 166301 20 + . . scaffold4 WUBlastX LINE_L2 166310 166909 104 + . . scaffold4 GLEAN mRNA 167848 170132 0.836238 - . ID=CGI_10021171; scaffold4 TRF Tandem_Repeat 168842 168952 222 + . . scaffold4 GLEAN promoter 170133 171132 0.836238 - . ID=CGI_10021171; scaffold4 TRF Tandem_Repeat 172235 172329 118 + . . scaffold4 TRF Tandem_Repeat 174208 174309 59 + . . scaffold4 TRF Tandem_Repeat 174249 174307 109 + . . scaffold4 TRF Tandem_Repeat 175509 175551 86 + . . scaffold4 TRF Tandem_Repeat 175818 175892 150 + . . scaffold4 TRF Tandem_Repeat 176735 176865 189 + . . scaffold4 WUBlastX LINE_L1-Tx1 179455 179673 39 - . . scaffold4 TRF Tandem_Repeat 182345 182394 66 + . . scaffold4 TRF Tandem_Repeat 182346 182391 58 + . . scaffold4 TRF Tandem_Repeat 185681 185725 56 + . . scaffold4 TRF Tandem_Repeat 185895 186775 1243 + . . scaffold4 WUBlastX DNA_TcMar-Marin 197460 197582 66 - . . scaffold4 WUBlastX LTR_DIRS 200570 200734 41 + . . scaffold4 WUBlastX LTR_DIRS 200600 200734 45 + . . scaffold4 WUBlastX LTR_DIRS 200645 200737 48 + . . scaffold4 WUBlastX LTR_DIRS 200740 201081 154 + . . scaffold4 WUBlastX LTR_DIRS 200797 201246 96 + . . scaffold4 WUBlastX LTR_DIRS 201224 201352 46 + . . scaffold4 WUBlastX LTR_DIRS 201352 202125 442 + . . scaffold4 WUBlastX LTR_DIRS 202109 202273 98 + . . scaffold4 WUBlastX LTR_DIRS 202293 203237 671 + . . scaffold4 WUBlastX LTR_DIRS 203159 203278 44 + . . scaffold4 WUBlastX LTR_DIRS 203260 203502 155 + . . scaffold4 WUBlastX LTR_DIRS 203508 203741 20 + . . scaffold4 WUBlastX LTR_DIRS 203520 203657 30 + . . scaffold4 WUBlastX LTR_DIRS 204026 204292 36 + . . scaffold4 WUBlastX LTR_DIRS 204071 204295 55 + . . scaffold4 WUBlastX LTR_DIRS 204238 204570 185 + . . scaffold4 TRF Tandem_Repeat 208875 208906 64 + . . scaffold4 TRF Tandem_Repeat 209883 209919 56 + . . scaffold4 WUBlastX LTR_Gypsy 215854 215997 28 + . . scaffold4 WUBlastX LTR_DIRS 216242 216592 124 + . . scaffold4 WUBlastX LTR_DIRS 216335 216592 151 + . . scaffold4 WUBlastX LTR_DIRS 216580 216867 187 + . . scaffold4 WUBlastX LTR_DIRS 216837 217736 439 + . . scaffold4 WUBlastX LTR_DIRS 217738 218121 163 + . . scaffold4 WUBlastX LTR_DIRS 217759 218271 154 + . . scaffold4 WUBlastX LTR_DIRS 218294 218755 75 + . . scaffold4 WUBlastX LTR_DIRS 218324 218659 146 + . . scaffold4 WUBlastX DNA_IS4EU 219055 219423 28 + . . scaffold4 WUBlastX DNA_Kolobok-IS4 219172 219441 108 + . . scaffold4 WUBlastX DNA_IS4EU 219178 219516 45 + . . scaffold4 WUBlastX DNA_IS4EU 219437 219595 25 - . . scaffold4 WUBlastX DNA_IS4EU 219561 219896 118 - . . scaffold4 WUBlastX DNA_IS4EU 219576 219998 110 - . . scaffold4 WUBlastX DNA_IS4EU 219781 220131 28 - . . scaffold4 WUBlastX DNA_Kolobok-IS4 219781 220071 50 - . . scaffold4 WUBlastX DNA_IS4EU 220309 220662 76 - . . scaffold4 WUBlastX LINE_L1-Tx1 254424 254861 72 - . . scaffold4 WUBlastX LINE_L1-Tx1 254888 255193 101 - . . scaffold4 WUBlastX LINE_L1-Tx1 255211 255480 36 - . . scaffold4 WUBlastX LINE_L1-Tx1 255259 255510 46 - . . scaffold4 TRF Tandem_Repeat 255534 255588 74 + . . scaffold4 TRF Tandem_Repeat 255612 256407 979 + . . scaffold4 TRF Tandem_Repeat 256578 256624 58 + . . scaffold4 TRF Tandem_Repeat 256648 257443 979 + . . scaffold4 WUBlastX LINE_L1-Tx1 257511 257903 40 - . . scaffold4 WUBlastX LINE_L1 257644 258519 93 - . . scaffold4 WUBlastX LINE_L1 258291 259079 145 - . . scaffold4 WUBlastX LINE_L1-Tx1 259563 260309 123 - . . scaffold4 TRF Tandem_Repeat 266516 266553 76 + . . scaffold4 TRF Tandem_Repeat 276725 277460 987 + . . scaffold4 WUBlastX RC_Helitron 279251 279343 30 - . . scaffold4 WUBlastX RC_Helitron 279251 279406 22 - . . scaffold4 WUBlastX RC_Helitron 279403 279714 69 - . . scaffold4 WUBlastX LINE_Penelope 280227 280313 36 - . . scaffold4 WUBlastX LINE_Penelope 280413 280691 84 - . . scaffold4 WUBlastX LINE_Penelope 280645 280806 30 - . . scaffold4 WUBlastX RC_Helitron 282727 283050 95 - . . scaffold4 WUBlastX RC_Helitron 282942 283661 274 - . . scaffold4 WUBlastX RC_Helitron 283661 283765 35 - . . scaffold4 WUBlastX RC_Helitron 283661 283975 20 - . . scaffold4 WUBlastX RC_Helitron 284862 285242 141 - . . scaffold4 WUBlastX RC_Helitron 284937 285227 153 - . . scaffold4 TRF Tandem_Repeat 291251 291290 80 + . . scaffold4 WUBlastX LTR_DIRS 316174 317301 274 - . . scaffold4 WUBlastX LTR_DIRS 317307 317489 104 - . . scaffold4 WUBlastX LTR_DIRS 317976 318296 173 - . . scaffold4 WUBlastX LTR_DIRS 317985 318413 111 - . . scaffold4 WUBlastX LTR_DIRS 318908 319108 82 - . . scaffold4 WUBlastX LTR_DIRS 318923 319258 51 - . . scaffold4 WUBlastX LTR_DIRS 318929 319165 62 - . . scaffold4 WUBlastX LTR_DIRS 321323 321637 52 - . . scaffold4 WUBlastX LTR_DIRS 321386 321625 102 - . . scaffold4 WUBlastX LTR_DIRS 321621 322040 140 - . . scaffold4 WUBlastX LTR_DIRS 322025 322081 27 - . . scaffold4 WUBlastX LTR_DIRS 322416 322544 57 - . . scaffold4 WUBlastX LTR_DIRS 322422 322586 44 - . . scaffold4 TRF Tandem_Repeat 327424 327449 52 + . . scaffold4 TRF Tandem_Repeat 327587 328308 1004 + . . scaffold4 TRF Tandem_Repeat 329440 329564 67 + . . scaffold4 GLEAN promoter 329565 330564 0.481488 + . ID=CGI_10021172; scaffold4 GLEAN mRNA 330565 330993 0.481488 + . ID=CGI_10021172; scaffold4 TRF Tandem_Repeat 331971 332295 262 + . . scaffold4 TRF Tandem_Repeat 331971 332344 321 + . . scaffold4 TRF Tandem_Repeat 332774 333038 203 + . . scaffold4 TRF Tandem_Repeat 332827 333038 221 + . . scaffold4 TRF Tandem_Repeat 333118 333158 64 + . . scaffold4 TRF Tandem_Repeat 336195 337546 1970 + . . scaffold4 TRF Tandem_Repeat 337708 337765 64 + . . scaffold4 TRF Tandem_Repeat 337708 337741 68 + . . scaffold4 TRF Tandem_Repeat 338296 338447 126 + . . scaffold4 GLEAN promoter 338340 339339 1 + . ID=CGI_10021173; scaffold4 TRF Tandem_Repeat 338524 338614 101 + . . scaffold4 TRF Tandem_Repeat 338524 338625 100 + . . scaffold4 GLEAN mRNA 339340 340875 1 + . ID=CGI_10021173; scaffold4 TRF Tandem_Repeat 342577 342722 215 + . . scaffold4 GLEAN promoter 342942 343941 0.759631 + . ID=CGI_10021174; scaffold4 TRF Tandem_Repeat 343449 343573 92 + . . scaffold4 GLEAN mRNA 343942 353209 0.759631 + . ID=CGI_10021174; scaffold4 TRF Tandem_Repeat 345488 345531 56 + . . scaffold4 WUBlastX LINE_L1-Tx1 346835 347248 24 - . . scaffold4 WUBlastX LINE_L1-Tx1 347009 347620 68 - . . scaffold4 WUBlastX LINE_L1-Tx1 347692 349815 809 - . . scaffold4 WUBlastX LINE_RTE-X 357608 357823 32 - . . scaffold4 WUBlastX LINE_RTE-X 357745 358257 117 - . . scaffold4 WUBlastX LINE_RTE-X 359973 360200 32 + . . scaffold4 WUBlastX LINE_RTE-X 360102 360191 51 + . . scaffold4 TRF Tandem_Repeat 364437 364537 109 + . . scaffold4 TRF Tandem_Repeat 366854 368004 1666 + . . scaffold4 TRF Tandem_Repeat 368618 368642 50 + . . scaffold4 TRF Tandem_Repeat 370178 370300 176 + . . scaffold4 GLEAN promoter 377550 378549 1 + . ID=CGI_10021175; scaffold4 GLEAN mRNA 378550 384861 1 + . ID=CGI_10021175; scaffold4 TRF Tandem_Repeat 378935 379073 251 + . . scaffold4 GLEAN mRNA 380276 392201 0.737572 - . ID=CGI_10021176; scaffold4 TRF Tandem_Repeat 382376 382446 126 + . . scaffold4 TRF Tandem_Repeat 386923 386989 134 + . . scaffold4 TRF Tandem_Repeat 388334 388391 107 + . . scaffold4 TRF Tandem_Repeat 389119 389200 164 + . . scaffold4 GLEAN promoter 392202 393201 0.737572 - . ID=CGI_10021176; scaffold4 GLEAN mRNA 392637 393403 0.999998 - . ID=CGI_10021177; scaffold4 GLEAN promoter 393404 394403 0.999998 - . ID=CGI_10021177; scaffold4 TRF Tandem_Repeat 394254 394313 120 + . . scaffold4 TRF Tandem_Repeat 395687 396703 1141 + . . scaffold4 TRF Tandem_Repeat 396232 396313 75 + . . scaffold4 GLEAN mRNA 399048 412768 0.934022 - . ID=CGI_10021178; scaffold4 TRF Tandem_Repeat 400298 400604 488 + . . scaffold4 TRF Tandem_Repeat 410777 411342 848 + . . scaffold4 TRF Tandem_Repeat 411848 412130 487 + . . scaffold4 TRF Tandem_Repeat 412574 412605 64 + . . scaffold4 TRF Tandem_Repeat 412603 412653 93 + . . scaffold4 GLEAN promoter 412769 413768 0.934022 - . ID=CGI_10021178; scaffold4 TRF Tandem_Repeat 415527 415646 233 + . . scaffold4 TRF Tandem_Repeat 417311 417356 92 + . . scaffold4 TRF Tandem_Repeat 419062 419105 88 + . . scaffold4 GLEAN mRNA 420407 460487 0.960328 - . ID=CGI_10021179; scaffold4 TRF Tandem_Repeat 425754 425787 59 + . . scaffold4 WUBlastX LINE_L1-Tx1 435618 435818 52 + . . scaffold4 WUBlastX LINE_L1 435636 435977 36 + . . scaffold4 WUBlastX LINE_L1-Tx1 435651 435863 36 + . . scaffold4 TRF Tandem_Repeat 457257 457320 128 + . . scaffold4 TRF Tandem_Repeat 458306 458347 84 + . . scaffold4 WUBlastX LINE_RTE-X 459234 459476 25 + . . scaffold4 WUBlastX LINE_RTE-X 459288 459482 67 + . . scaffold4 WUBlastX LINE_RTE-X 459300 459590 41 + . . scaffold4 GLEAN promoter 460488 461487 0.960328 - . ID=CGI_10021179; scaffold4 GLEAN promoter 462325 463324 0.998731 + . ID=CGI_10021180; scaffold4 GLEAN mRNA 463325 481913 0.998731 + . ID=CGI_10021180; scaffold4 TRF Tandem_Repeat 464006 464087 71 + . . scaffold4 WUBlastX LINE_L1-Tx1 473267 473779 111 - . . scaffold4 WUBlastX LINE_Dong-R4 473498 473944 22 - . . scaffold4 WUBlastX LINE_L1 474620 474676 20 - . . scaffold4 WUBlastX LINE_L1-Tx1 474746 475111 25 - . . scaffold4 WUBlastX LINE_L1 474827 475012 42 - . . scaffold4 WUBlastX LINE_L1 474860 475048 40 - . . scaffold4 WUBlastX LINE_L1 474878 475099 35 - . . scaffold4 WUBlastX LINE_L1-Tx1 475206 476429 612 - . . scaffold4 WUBlastX LINE_L1 476431 476541 29 - . . scaffold4 WUBlastX LINE_L1 476461 476544 42 - . . scaffold4 WUBlastX LINE_L1-Tx1 476520 477029 162 - . . scaffold4 WUBlastX LINE_L1-Tx1 476772 477089 147 - . . scaffold4 GLEAN promoter 481189 482188 0.520571 + . ID=CGI_10021181; scaffold4 GLEAN mRNA 482189 483103 0.520571 + . ID=CGI_10021181; scaffold4 WUBlastX LINE_RTE-X 495267 495509 25 + . . scaffold4 WUBlastX LINE_RTE-X 495321 495515 67 + . . scaffold4 WUBlastX LINE_RTE-X 495333 495623 41 + . . scaffold4 TRF Tandem_Repeat 529650 529947 450 + . . scaffold4 TRF Tandem_Repeat 530227 530268 66 + . . scaffold4 TRF Tandem_Repeat 530300 530354 110 + . . scaffold4 GLEAN promoter 535172 536171 1 + . ID=CGI_10021182; scaffold4 WUBlastX LINE_CR1 535338 536099 160 + . . scaffold4 WUBlastX LINE_Jockey 535710 536219 21 + . . scaffold4 GLEAN mRNA 536172 536474 1 + . ID=CGI_10021182; scaffold4 WUBlastX DNA_IS 536937 538154 2000 + . . scaffold4 WUBlastX LINE_L1-Tx1 538161 540005 809 + . . scaffold4 GLEAN promoter 540624 541623 0.997345 + . ID=CGI_10021183; scaffold4 GLEAN mRNA 541624 542784 0.997345 + . ID=CGI_10021183; scaffold4 WUBlastX DNA_Harbinger 546214 546444 112 - . . scaffold4 WUBlastX DNA_Harbinger 546752 546865 21 - . . scaffold4 WUBlastX DNA_Harbinger 546933 546992 21 - . . scaffold4 TRF Tandem_Repeat 560475 560516 84 + . . scaffold4 GLEAN promoter 562390 563389 0.980366 + . ID=CGI_10021184; scaffold4 GLEAN mRNA 563390 567152 0.980366 + . ID=CGI_10021184; scaffold4 TRF Tandem_Repeat 567288 567455 311 + . . scaffold4 GLEAN mRNA 568589 572392 1 - . ID=CGI_10021185; scaffold4 GLEAN promoter 572393 573392 1 - . ID=CGI_10021185; scaffold4 GLEAN mRNA 574430 574764 1 - . ID=CGI_10021186; scaffold4 GLEAN promoter 574765 575764 1 - . ID=CGI_10021186; scaffold4 GLEAN mRNA 579491 582349 0.999415 - . ID=CGI_10021187; scaffold4 GLEAN promoter 582350 583349 0.999415 - . ID=CGI_10021187; scaffold4 GLEAN promoter 584487 585486 0.999949 + . ID=CGI_10021188; scaffold4 GLEAN mRNA 585487 608264 0.999949 + . ID=CGI_10021188; scaffold4 TRF Tandem_Repeat 597341 598312 1332 + . . scaffold4 TRF Tandem_Repeat 597341 598315 1410 + . . scaffold4 TRF Tandem_Repeat 597341 598312 1314 + . . scaffold4 TRF Tandem_Repeat 600737 601034 479 + . . scaffold4 TRF Tandem_Repeat 606354 606409 112 + . . scaffold4 TRF Tandem_Repeat 608718 609129 325 + . . scaffold4 WUBlastX LINE_CR1-L2 611361 611549 53 - . . scaffold4 WUBlastX LINE_CR1-L2 611558 611773 22 - . . scaffold4 TRF Tandem_Repeat 612052 612171 145 + . . scaffold4 TRF Tandem_Repeat 614306 614351 92 + . . scaffold4 TRF Tandem_Repeat 624408 626255 2454 + . . scaffold4 TRF Tandem_Repeat 633882 633908 54 + . . scaffold4 WUBlastX LINE_L2 649353 650228 100 + . . scaffold4 WUBlastX LINE_L2 649560 650450 199 + . . scaffold4 WUBlastX LINE_CR1-L2 650234 650653 124 + . . scaffold4 WUBlastX LINE_L2 650489 650689 30 + . . scaffold4 TRF Tandem_Repeat 651018 652794 2430 + . . scaffold4 TRF Tandem_Repeat 651018 652794 2312 + . . scaffold4 TRF Tandem_Repeat 659489 659534 92 + . . scaffold4 WUBlastX LINE_L1-Tx1 664367 664417 21 - . . scaffold4 WUBlastX LINE_RTE-X 664407 665417 314 - . . scaffold4 WUBlastX LINE_RTE-X 665411 665779 191 - . . scaffold4 WUBlastX LINE_I 665788 666387 113 - . . scaffold4 WUBlastX LINE_RTE-X 665788 666294 322 - . . scaffold4 WUBlastX LINE_L1-Tx1 667205 667276 20 - . . scaffold4 WUBlastX LTR_Gypsy 672970 673776 289 + . . scaffold4 WUBlastX LTR_Gypsy-Cigr 673102 673908 551 + . . scaffold4 WUBlastX LTR_Gypsy 673108 674175 382 + . . scaffold4 WUBlastX LTR_Gypsy 673900 674502 216 + . . scaffold4 WUBlastX LTR_Gypsy 673915 674409 293 + . . scaffold4 WUBlastX LTR_Gypsy-Cigr 674403 674768 182 + . . scaffold4 WUBlastX LTR_Gypsy 674445 674876 51 + . . scaffold4 WUBlastX LINE_RTE-X 676306 676389 22 + . . scaffold4 WUBlastX LINE_RTE-X 676430 676477 32 + . . scaffold4 WUBlastX LINE_RTE-X 676715 676840 20 + . . scaffold4 WUBlastX LINE_RTE-X 676806 676880 44 + . . scaffold4 WUBlastX LINE_RTE-X 676839 676937 54 + . . scaffold4 WUBlastX LINE_RTE-X 676842 676955 47 + . . scaffold40 TRF Tandem_Repeat 5997 6026 60 + . . scaffold40 WUBlastX LINE_Penelope 6784 6876 45 + . . scaffold40 WUBlastX LINE_Penelope 6793 7086 32 + . . scaffold40 WUBlastX LINE_Penelope 7080 8180 220 + . . scaffold40 WUBlastX LINE_Penelope 8050 8436 34 + . . scaffold40 WUBlastX LINE_Penelope 8164 8346 43 + . . scaffold40 TRF Tandem_Repeat 11528 11575 87 + . . scaffold40 TRF Tandem_Repeat 18591 18644 56 + . . scaffold40 GLEAN promoter 23060 24059 0.999984 + . ID=CGI_10015095; scaffold40 GLEAN mRNA 24060 26078 0.999984 + . ID=CGI_10015095; scaffold40 GLEAN mRNA 27830 29414 0.63315 - . ID=CGI_10015096; scaffold40 GLEAN promoter 29415 30414 0.63315 - . ID=CGI_10015096; scaffold40 GLEAN mRNA 29840 51547 0.42997 - . ID=CGI_10015097; scaffold40 TRF Tandem_Repeat 31868 31933 132 + . . scaffold40 TRF Tandem_Repeat 34162 34571 473 + . . scaffold40 TRF Tandem_Repeat 36533 36942 473 + . . scaffold40 TRF Tandem_Repeat 38266 38304 60 + . . scaffold40 TRF Tandem_Repeat 42439 42559 174 + . . scaffold40 GLEAN promoter 51548 52547 0.42997 - . ID=CGI_10015097; scaffold40 GLEAN promoter 58633 59632 0.998038 + . ID=CGI_10015098; scaffold40 GLEAN mRNA 59633 61642 0.998038 + . ID=CGI_10015098; scaffold40 GLEAN mRNA 62919 65771 1 - . ID=CGI_10015099; scaffold40 GLEAN promoter 65772 66771 1 - . ID=CGI_10015099; scaffold40 TRF Tandem_Repeat 66612 66660 82 + . . scaffold40 TRF Tandem_Repeat 67742 67791 82 + . . scaffold40 TRF Tandem_Repeat 107341 107375 70 + . . scaffold40 GLEAN mRNA 110344 110538 0.618186 - . ID=CGI_10015100; scaffold40 GLEAN promoter 110539 111538 0.618186 - . ID=CGI_10015100; scaffold40 TRF Tandem_Repeat 117824 117920 126 + . . scaffold40 TRF Tandem_Repeat 118095 118128 50 + . . scaffold40 GLEAN promoter 119146 120145 0.998703 + . ID=CGI_10015101; scaffold40 GLEAN mRNA 120146 125525 0.998703 + . ID=CGI_10015101; scaffold40 GLEAN mRNA 127071 134335 0.999603 - . ID=CGI_10015102; scaffold40 TRF Tandem_Repeat 130141 130180 80 + . . scaffold40 TRF Tandem_Repeat 132713 132754 84 + . . scaffold40 GLEAN promoter 134336 135335 0.999603 - . ID=CGI_10015102; scaffold40 GLEAN mRNA 134847 145601 1 - . ID=CGI_10015103; scaffold40 TRF Tandem_Repeat 145195 145268 71 + . . scaffold40 GLEAN promoter 145602 146601 1 - . ID=CGI_10015103; scaffold40 TRF Tandem_Repeat 148479 148527 98 + . . scaffold40 GLEAN mRNA 148550 151320 0.999676 - . ID=CGI_10015104; scaffold40 GLEAN promoter 151321 152320 0.999676 - . ID=CGI_10015104; scaffold40 TRF Tandem_Repeat 157230 157313 55 + . . scaffold40 GLEAN promoter 159564 160563 0.55286 + . ID=CGI_10015105; scaffold40 GLEAN mRNA 160564 175918 0.55286 + . ID=CGI_10015105; scaffold40 TRF Tandem_Repeat 172314 172341 56 + . . scaffold40 TRF Tandem_Repeat 180104 180152 98 + . . scaffold40 TRF Tandem_Repeat 183537 183586 100 + . . scaffold40 TRF Tandem_Repeat 188294 188392 63 + . . scaffold40 TRF Tandem_Repeat 188563 188658 111 + . . scaffold40 WUBlastX DNA_TcMar-Marin 199770 200117 98 + . . scaffold40 TRF Tandem_Repeat 204445 204921 526 + . . scaffold40 TRF Tandem_Repeat 206806 206933 70 + . . scaffold40 TRF Tandem_Repeat 215232 215265 59 + . . scaffold40 TRF Tandem_Repeat 249951 249982 64 + . . scaffold40 GLEAN mRNA 252666 257460 0.323172 - . ID=CGI_10015106; scaffold40 WUBlastX DNA_Academ 255366 255647 95 - . . scaffold40 WUBlastX DNA_Academ 255655 257373 533 - . . scaffold40 WUBlastX DNA_Academ 257378 258352 348 - . . scaffold40 GLEAN promoter 257461 258460 0.323172 - . ID=CGI_10015106; scaffold40 WUBlastX DNA_Academ 258453 258503 23 - . . scaffold40 WUBlastX DNA_Academ 259061 259558 185 - . . scaffold40 GLEAN promoter 273574 274573 0.999997 + . ID=CGI_10015107; scaffold40 GLEAN mRNA 274574 275649 0.999997 + . ID=CGI_10015107; scaffold40 TRF Tandem_Repeat 276761 276799 78 + . . scaffold40 TRF Tandem_Repeat 284182 284221 80 + . . scaffold40 TRF Tandem_Repeat 303051 303084 68 + . . scaffold40 TRF Tandem_Repeat 304732 304784 106 + . . scaffold40 TRF Tandem_Repeat 308951 308989 78 + . . scaffold40 TRF Tandem_Repeat 309841 309884 88 + . . scaffold40 TRF Tandem_Repeat 310376 310422 94 + . . scaffold40 TRF Tandem_Repeat 312847 312894 96 + . . scaffold40 TRF Tandem_Repeat 316051 316117 134 + . . scaffold40 TRF Tandem_Repeat 319692 319820 137 + . . scaffold40 TRF Tandem_Repeat 319692 319806 126 + . . scaffold40 TRF Tandem_Repeat 319717 319818 96 + . . scaffold40 TRF Tandem_Repeat 320683 321286 670 + . . scaffold40 TRF Tandem_Repeat 320696 321286 603 + . . scaffold40 TRF Tandem_Repeat 324534 324583 100 + . . scaffold40 TRF Tandem_Repeat 327875 327929 110 + . . scaffold40 TRF Tandem_Repeat 339852 339961 118 + . . scaffold40 TRF Tandem_Repeat 339852 339962 111 + . . scaffold40 TRF Tandem_Repeat 340204 340248 90 + . . scaffold40 TRF Tandem_Repeat 340324 340382 91 + . . scaffold40 TRF Tandem_Repeat 344498 344557 111 + . . scaffold40 TRF Tandem_Repeat 344954 345077 239 + . . scaffold40 TRF Tandem_Repeat 348095 348161 102 + . . scaffold40 TRF Tandem_Repeat 348159 348237 149 + . . scaffold40 TRF Tandem_Repeat 357430 357502 137 + . . scaffold40 GLEAN promoter 373660 374659 0.998966 + . ID=CGI_10015108; scaffold40 GLEAN mRNA 374660 391697 0.998966 + . ID=CGI_10015108; scaffold40 TRF Tandem_Repeat 379115 379171 114 + . . scaffold40 TRF Tandem_Repeat 390569 390611 86 + . . scaffold400 TRF Tandem_Repeat 1289 1316 56 + . . scaffold400 GLEAN mRNA 13507 19495 0.999676 - . ID=CGI_10011429; scaffold400 GLEAN promoter 19496 20495 0.999676 - . ID=CGI_10011429; scaffold400 GLEAN mRNA 20176 40517 0.999676 - . ID=CGI_10011430; scaffold400 TRF Tandem_Repeat 20320 20444 216 + . . scaffold400 TRF Tandem_Repeat 36951 36992 84 + . . scaffold400 TRF Tandem_Repeat 38380 38471 157 + . . scaffold400 TRF Tandem_Repeat 39005 39078 148 + . . scaffold400 GLEAN promoter 40518 41517 0.999676 - . ID=CGI_10011430; scaffold400 TRF Tandem_Repeat 41270 41311 84 + . . scaffold400 GLEAN promoter 44342 45341 0.975212 + . ID=CGI_10011431; scaffold400 GLEAN mRNA 45342 63093 0.975212 + . ID=CGI_10011431; scaffold400 TRF Tandem_Repeat 46202 46280 158 + . . scaffold400 TRF Tandem_Repeat 57119 57408 158 + . . scaffold400 TRF Tandem_Repeat 60359 60524 142 + . . scaffold400 GLEAN mRNA 71971 76117 0.997895 - . ID=CGI_10011432; scaffold400 GLEAN promoter 76118 77117 0.997895 - . ID=CGI_10011432; scaffold400 GLEAN mRNA 76212 94924 0.998568 - . ID=CGI_10011433; scaffold400 TRF Tandem_Repeat 84090 84206 99 + . . scaffold400 TRF Tandem_Repeat 84240 84452 206 + . . scaffold400 TRF Tandem_Repeat 84253 84452 318 + . . scaffold400 TRF Tandem_Repeat 94087 94170 57 + . . scaffold400 TRF Tandem_Repeat 94374 94423 100 + . . scaffold400 GLEAN promoter 94925 95924 0.998568 - . ID=CGI_10011433; scaffold400 TRF Tandem_Repeat 95412 95452 82 + . . scaffold400 TRF Tandem_Repeat 100698 100757 63 + . . scaffold400 TRF Tandem_Repeat 100699 100761 78 + . . scaffold400 TRF Tandem_Repeat 102856 102900 72 + . . scaffold400 TRF Tandem_Repeat 102886 102960 123 + . . scaffold400 TRF Tandem_Repeat 107253 107292 80 + . . scaffold400 TRF Tandem_Repeat 110194 110281 106 + . . scaffold400 TRF Tandem_Repeat 110203 110281 97 + . . scaffold400 TRF Tandem_Repeat 115036 115084 80 + . . scaffold400 WUBlastX LINE_Penelope 117975 118349 101 + . . scaffold400 WUBlastX LINE_Penelope 142552 142917 107 + . . scaffold400 WUBlastX LINE_Penelope 142630 142917 116 + . . scaffold400 GLEAN promoter 147266 148265 0.331492 + . ID=CGI_10011434; scaffold400 GLEAN mRNA 148266 176173 0.331492 + . ID=CGI_10011434; scaffold400 TRF Tandem_Repeat 164874 165673 740 + . . scaffold400 GLEAN mRNA 169332 179533 0.999099 - . ID=CGI_10011435; scaffold400 GLEAN promoter 179534 180533 0.999099 - . ID=CGI_10011435; scaffold400 GLEAN mRNA 179612 184200 0.999999 - . ID=CGI_10011436; scaffold400 TRF Tandem_Repeat 183439 183500 117 + . . scaffold400 GLEAN promoter 184201 185200 0.999999 - . ID=CGI_10011436; scaffold400 WUBlastX LINE_RTE-X 185245 185589 39 - . . scaffold400 WUBlastX RC_Helitron 193431 193715 105 - . . scaffold400 GLEAN mRNA 195909 223191 0.813725 - . ID=CGI_10011437; scaffold400 WUBlastX LINE_L1-Tx1 196960 197313 88 - . . scaffold400 WUBlastX LINE_L1-Tx1 197113 197310 100 - . . scaffold400 WUBlastX LINE_L1-Tx1 197504 197776 45 - . . scaffold400 WUBlastX RC_Helitron 204732 205178 95 - . . scaffold400 GLEAN promoter 223192 224191 0.813725 - . ID=CGI_10011437; scaffold400 TRF Tandem_Repeat 239619 239674 85 + . . scaffold400 TRF Tandem_Repeat 243668 243708 82 + . . scaffold400 GLEAN promoter 243913 244912 1 + . ID=CGI_10011438; scaffold400 GLEAN mRNA 244913 251896 1 + . ID=CGI_10011438; scaffold400 GLEAN promoter 251669 252668 0.999572 + . ID=CGI_10011439; scaffold400 GLEAN mRNA 252669 255041 0.999572 + . ID=CGI_10011439; scaffold400 TRF Tandem_Repeat 257280 257324 83 + . . scaffold400 GLEAN mRNA 262709 267661 0.544852 - . ID=CGI_10011440; scaffold400 WUBlastX LINE_L2 264815 265330 107 - . . scaffold400 WUBlastX LINE_CR1-L2 265025 265621 461 - . . scaffold400 WUBlastX LINE_CR1-L2 265617 266861 404 - . . scaffold400 WUBlastX LINE_CR1 266436 267059 44 - . . scaffold400 WUBlastX LINE_CR1 266613 266933 45 - . . scaffold400 GLEAN promoter 267662 268661 0.544852 - . ID=CGI_10011440; scaffold400 WUBlastX LINE_RTE-X 271012 271368 31 - . . scaffold400 WUBlastX LINE_RTE-X 271066 271392 42 - . . scaffold400 WUBlastX LINE_RTE-X 271066 271332 57 - . . scaffold400 WUBlastX LINE_RTE-X 271069 271278 64 - . . scaffold400 TRF Tandem_Repeat 271783 271821 78 + . . scaffold400 TRF Tandem_Repeat 272015 272046 64 + . . scaffold400 TRF Tandem_Repeat 274225 274400 183 + . . scaffold400 TRF Tandem_Repeat 274240 274392 134 + . . scaffold400 GLEAN mRNA 275762 290092 0.47452 - . ID=CGI_10011441; scaffold400 TRF Tandem_Repeat 285230 285330 87 + . . scaffold400 TRF Tandem_Repeat 285325 285416 96 + . . scaffold400 TRF Tandem_Repeat 285986 286208 139 + . . scaffold400 TRF Tandem_Repeat 286013 286151 84 + . . scaffold400 WUBlastX DNA_Sola 288120 289382 53 + . . scaffold400 WUBlastX DNA_Sola 288573 289418 266 + . . scaffold400 GLEAN promoter 290093 290823 0.47452 - . ID=CGI_10011441; scaffold40002 GLEAN promoter 2146 3145 1 + . ID=CGI_10003775; scaffold40002 GLEAN mRNA 3146 9912 1 + . ID=CGI_10003775; scaffold40002 GLEAN mRNA 11556 13262 0.575207 - . ID=CGI_10003776; scaffold40002 GLEAN promoter 13263 14262 0.575207 - . ID=CGI_10003776; scaffold40002 GLEAN promoter 35253 36252 0.652829 + . ID=CGI_10003777; scaffold40002 GLEAN mRNA 36253 64033 0.652829 + . ID=CGI_10003777; scaffold40002 GLEAN promoter 71757 72756 0.998274 + . ID=CGI_10003778; scaffold40002 GLEAN mRNA 72757 73820 0.998274 + . ID=CGI_10003778; scaffold40002 GLEAN mRNA 74314 82771 0.999999 - . ID=CGI_10003779; scaffold40002 GLEAN promoter 82772 82794 0.999999 - . ID=CGI_10003779; scaffold40006 GLEAN promoter 1 385 0.828076 + . ID=CGI_10003792; scaffold40006 GLEAN mRNA 386 6461 0.828076 + . ID=CGI_10003792; scaffold40006 WUBlastX DNA_TcMar-Tc1 7513 8358 98 + . . scaffold40006 WUBlastX DNA_TcMar-Tc1 8029 8382 107 + . . scaffold40006 WUBlastX DNA_TcMar-Tc1 8089 8451 83 + . . scaffold40006 WUBlastX DNA_TcMar-Tc1 8092 8355 128 + . . scaffold40006 WUBlastX DNA_Harbinger 8643 8945 146 + . . scaffold40006 WUBlastX DNA_Harbinger 8956 9360 205 + . . scaffold40006 WUBlastX DNA_Harbinger 9285 9521 149 + . . scaffold40006 WUBlastX DNA_Harbinger 9321 9638 124 + . . scaffold40006 TRF Tandem_Repeat 10377 10425 53 + . . scaffold40006 TRF Tandem_Repeat 12225 12370 82 + . . scaffold40006 TRF Tandem_Repeat 18024 18086 56 + . . scaffold40006 TRF Tandem_Repeat 18060 18101 50 + . . scaffold40006 GLEAN promoter 23018 24017 0.809339 + . ID=CGI_10003793; scaffold40006 GLEAN mRNA 24018 26498 0.809339 + . ID=CGI_10003793; scaffold40006 TRF Tandem_Repeat 35486 35515 60 + . . scaffold40006 TRF Tandem_Repeat 41789 41832 81 + . . scaffold40006 TRF Tandem_Repeat 48247 48295 98 + . . scaffold40006 TRF Tandem_Repeat 49149 49191 86 + . . scaffold40006 TRF Tandem_Repeat 54298 54346 71 + . . scaffold40006 TRF Tandem_Repeat 56281 56327 94 + . . scaffold40006 TRF Tandem_Repeat 56653 56677 50 + . . scaffold40006 TRF Tandem_Repeat 62343 62436 134 + . . scaffold40006 TRF Tandem_Repeat 62485 62623 214 + . . scaffold40006 TRF Tandem_Repeat 63180 63278 112 + . . scaffold40006 GLEAN promoter 69014 70013 0.524308 + . ID=CGI_10003794; scaffold40006 GLEAN mRNA 70014 72064 0.524308 + . ID=CGI_10003794; scaffold40006 GLEAN promoter 78778 79777 1 + . ID=CGI_10003795; scaffold40006 GLEAN mRNA 79778 80903 1 + . ID=CGI_10003795; scaffold40006 TRF Tandem_Repeat 80442 80517 100 + . . scaffold40010 WUBlastX LINE_L1-Tx1 26 526 105 - . . scaffold40010 WUBlastX DNA_Maverick 787 1356 144 - . . scaffold40010 WUBlastX DNA_Maverick 937 1431 43 - . . scaffold40010 WUBlastX DNA_Maverick 955 1356 237 - . . scaffold40010 TRF Tandem_Repeat 8013 8050 76 + . . scaffold40010 GLEAN promoter 9619 10618 0.999775 + . ID=CGI_10003782; scaffold40010 GLEAN mRNA 10619 11248 0.999775 + . ID=CGI_10003782; scaffold40010 TRF Tandem_Repeat 11489 11548 84 + . . scaffold40010 TRF Tandem_Repeat 11579 12703 1677 + . . scaffold40010 WUBlastX LINE_L2 27362 27490 50 + . . scaffold40010 WUBlastX LINE_L2 27604 27750 38 + . . scaffold40010 TRF Tandem_Repeat 30153 30188 54 + . . scaffold40010 GLEAN mRNA 33845 34066 0.999372 - . ID=CGI_10003784; scaffold40010 GLEAN promoter 34067 35066 0.999372 - . ID=CGI_10003784; scaffold40010 WUBlastX DNA_En-Spm 35966 36106 67 - . . scaffold40010 WUBlastX DNA_En-Spm 36666 36827 72 + . . scaffold40010 WUBlastX DNA_Helitron 38197 38574 44 - . . scaffold40010 TRF Tandem_Repeat 38763 38818 85 + . . scaffold40010 TRF Tandem_Repeat 38764 38826 89 + . . scaffold40010 TRF Tandem_Repeat 38764 38829 78 + . . scaffold40010 WUBlastX LINE_L2 39537 39596 21 - . . scaffold40010 WUBlastX LINE_L2 39753 40262 44 - . . scaffold40010 WUBlastX DNA_Helitron 39831 40724 117 - . . scaffold40010 WUBlastX RC_Helitron 40730 40801 25 - . . scaffold40010 WUBlastX DNA_Helitron 40730 40777 28 - . . scaffold40010 WUBlastX RC_Helitron 41651 41890 38 - . . scaffold40010 WUBlastX LTR_Gypsy 42198 42521 46 - . . scaffold40010 WUBlastX LINE_L1-Tx1 44944 45219 75 - . . scaffold40010 WUBlastX LINE_L1-Tx1 44944 45321 27 - . . scaffold40010 WUBlastX LTR_Pao 69022 70002 990 + . . scaffold40010 WUBlastX LTR_Gypsy 75046 75999 679 - . . scaffold40010 WUBlastX LTR_Gypsy 75676 76089 90 - . . scaffold40010 TRF Tandem_Repeat 76112 76143 64 + . . scaffold40010 WUBlastX DNA_IS4EU 77742 78227 56 + . . scaffold40010 WUBlastX DNA_Kolobok-IS4 77820 78173 87 + . . scaffold40010 WUBlastX DNA_IS4EU 77844 78257 80 + . . scaffold40010 WUBlastX DNA_Kolobok-IS4 78312 78401 47 + . . scaffold40010 WUBlastX DNA_IS4EU 78312 78383 50 + . . scaffold40016 TRF Tandem_Repeat 799 830 64 + . . scaffold40016 TRF Tandem_Repeat 917 944 56 + . . scaffold40016 TRF Tandem_Repeat 1515 2459 628 + . . scaffold40016 TRF Tandem_Repeat 1669 2388 569 + . . scaffold40016 GLEAN mRNA 2849 15023 0.93692 - . ID=CGI_10003734; scaffold40016 TRF Tandem_Repeat 9401 9718 209 + . . scaffold40016 GLEAN promoter 15024 16023 0.93692 - . ID=CGI_10003734; scaffold40016 TRF Tandem_Repeat 15519 15702 323 + . . scaffold40016 GLEAN promoter 16183 17182 1 + . ID=CGI_10003735; scaffold40016 GLEAN mRNA 17183 22436 1 + . ID=CGI_10003735; scaffold40016 TRF Tandem_Repeat 22514 22583 140 + . . scaffold40016 GLEAN promoter 23705 24704 1 + . ID=CGI_10003736; scaffold40016 GLEAN mRNA 24705 32827 1 + . ID=CGI_10003736; scaffold40016 TRF Tandem_Repeat 34001 34156 206 + . . scaffold40016 TRF Tandem_Repeat 55022 56260 983 + . . scaffold40016 TRF Tandem_Repeat 55030 56260 1117 + . . scaffold40016 TRF Tandem_Repeat 55030 56260 1228 + . . scaffold40016 TRF Tandem_Repeat 55498 56055 349 + . . scaffold40016 TRF Tandem_Repeat 55633 55920 189 + . . scaffold40016 TRF Tandem_Repeat 56374 57010 738 + . . scaffold40016 TRF Tandem_Repeat 57155 57375 433 + . . scaffold40016 TRF Tandem_Repeat 58379 58673 143 + . . scaffold40016 GLEAN mRNA 58825 65257 0.999671 - . ID=CGI_10003737; scaffold40016 GLEAN promoter 65258 66257 0.999671 - . ID=CGI_10003737; scaffold40016 TRF Tandem_Repeat 65788 65816 58 + . . scaffold40016 TRF Tandem_Repeat 65814 65850 74 + . . scaffold40016 TRF Tandem_Repeat 66202 66715 441 + . . scaffold40016 TRF Tandem_Repeat 66202 66716 500 + . . scaffold40016 TRF Tandem_Repeat 66202 66716 502 + . . scaffold40016 GLEAN mRNA 66917 68557 0.999661 - . ID=CGI_10003738; scaffold40016 GLEAN promoter 68558 69557 0.999661 - . ID=CGI_10003738; scaffold40016 WUBlastX LINE_L1-Tx1 77943 78821 136 - . . scaffold40016 WUBlastX LINE_L1-Tx1 78842 80542 1154 - . . scaffold40026 GLEAN mRNA 9413 14597 1 - . ID=CGI_10003828; scaffold40026 GLEAN promoter 14598 15597 1 - . ID=CGI_10003828; scaffold40026 GLEAN mRNA 16295 33029 0.999304 - . ID=CGI_10003829; scaffold40026 GLEAN promoter 33030 34029 0.999304 - . ID=CGI_10003829; scaffold40026 GLEAN promoter 38706 39705 0.74693 + . ID=CGI_10003830; scaffold40026 GLEAN mRNA 39706 44052 0.74693 + . ID=CGI_10003830; scaffold40026 GLEAN mRNA 42935 55873 0.544837 - . ID=CGI_10003831; scaffold40026 GLEAN promoter 55874 56873 0.544837 - . ID=CGI_10003831; scaffold40030 GLEAN promoter 1 29 1 + . ID=CGI_10003730; scaffold40030 GLEAN mRNA 30 5332 1 + . ID=CGI_10003730; scaffold40030 GLEAN promoter 4837 5836 1 + . ID=CGI_10003731; scaffold40030 GLEAN mRNA 5837 11105 1 + . ID=CGI_10003731; scaffold40030 GLEAN mRNA 11202 14252 0.999415 - . ID=CGI_10003732; scaffold40030 GLEAN promoter 14253 15252 0.999415 - . ID=CGI_10003732; scaffold40038 TRF Tandem_Repeat 1446 1870 501 + . . scaffold40038 TRF Tandem_Repeat 1505 1878 471 + . . scaffold40038 GLEAN mRNA 5272 10964 1 - . ID=CGI_10003771; scaffold40038 WUBlastX LTR_ERVK 6139 6237 47 - . . scaffold40038 WUBlastX LTR_ERVK 6718 6843 72 - . . scaffold40038 GLEAN promoter 10965 11964 1 - . ID=CGI_10003771; scaffold40038 GLEAN promoter 11231 12230 0.999661 + . ID=CGI_10003772; scaffold40038 GLEAN mRNA 12231 16297 0.999661 + . ID=CGI_10003772; scaffold40038 GLEAN mRNA 18652 60289 0.35346 - . ID=CGI_10003773; scaffold40038 TRF Tandem_Repeat 49600 49746 122 + . . scaffold40038 GLEAN promoter 60290 61289 0.35346 - . ID=CGI_10003773; scaffold40038 TRF Tandem_Repeat 64315 64345 62 + . . scaffold40038 GLEAN promoter 67244 68243 0.992267 + . ID=CGI_10003774; scaffold40038 GLEAN mRNA 68244 70699 0.992267 + . ID=CGI_10003774; scaffold40050 TRF Tandem_Repeat 947 1013 89 + . . scaffold40050 TRF Tandem_Repeat 3393 3434 84 + . . scaffold40050 WUBlastX LINE_RTE-X 7277 7567 36 - . . scaffold40050 GLEAN mRNA 7890 18741 0.999513 - . ID=CGI_10003806; scaffold40050 TRF Tandem_Repeat 15526 15573 78 + . . scaffold40050 GLEAN promoter 18047 19046 0.992322 + . ID=CGI_10003807; scaffold40050 GLEAN promoter 18742 19741 0.999513 - . ID=CGI_10003806; scaffold40050 GLEAN mRNA 19047 21690 0.992322 + . ID=CGI_10003807; scaffold40050 WUBlastX LINE_RTE-X 27322 27549 86 - . . scaffold40050 WUBlastX LINE_RTE-X 27599 27703 42 - . . scaffold40050 WUBlastX LINE_RTE-X 27602 27739 28 - . . scaffold40050 TRF Tandem_Repeat 33532 34333 1054 + . . scaffold40050 GLEAN promoter 42223 43222 0.999653 + . ID=CGI_10003808; scaffold40050 GLEAN mRNA 43223 48337 0.999653 + . ID=CGI_10003808; scaffold40050 TRF Tandem_Repeat 47833 47877 65 + . . scaffold40050 WUBlastX LINE_RTE-X 51767 51943 44 - . . scaffold40050 WUBlastX LINE_RTE-X 51776 51976 33 - . . scaffold40050 WUBlastX LINE_RTE-X 51779 51913 61 - . . scaffold40050 WUBlastX LINE_RTE-X 51975 52760 94 - . . scaffold40050 WUBlastX LINE_RTE-X 52383 52760 167 - . . scaffold40050 WUBlastX LINE_RTE-X 52765 52887 23 - . . scaffold40050 TRF Tandem_Repeat 56413 56462 66 + . . scaffold40050 TRF Tandem_Repeat 57865 58704 1341 + . . scaffold40050 TRF Tandem_Repeat 75893 75938 92 + . . scaffold40054 GLEAN promoter 2449 3448 0.88992 + . ID=CGI_10003809; scaffold40054 GLEAN mRNA 3449 10425 0.88992 + . ID=CGI_10003809; scaffold40054 GLEAN mRNA 12989 25304 1 - . ID=CGI_10003810; scaffold40054 GLEAN promoter 25305 26304 1 - . ID=CGI_10003810; scaffold40054 WUBlastX LINE_RTE-X 28055 28759 102 - . . scaffold40054 WUBlastX LINE_RTE-X 28055 28585 108 - . . scaffold40054 WUBlastX LINE_RTE-X 28169 28585 130 - . . scaffold40054 TRF Tandem_Repeat 31492 31568 154 + . . scaffold40054 TRF Tandem_Repeat 31738 31786 68 + . . scaffold40054 WUBlastX DNA_Sola 41480 41827 55 - . . scaffold40054 TRF Tandem_Repeat 44494 44730 176 + . . scaffold40054 TRF Tandem_Repeat 44494 44726 158 + . . scaffold40054 WUBlastX DNA_IS4EU 49099 49341 60 + . . scaffold40054 WUBlastX DNA_IS4EU 49105 49224 69 + . . scaffold40054 WUBlastX DNA_Kolobok-IS4 50220 50483 71 - . . scaffold40054 WUBlastX DNA_IS4EU 50280 50483 97 - . . scaffold40054 WUBlastX DNA_IS4EU 50334 50528 52 - . . scaffold40054 WUBlastX DNA_IS4EU 50334 50486 98 - . . scaffold40054 WUBlastX LTR_Ngaro 51728 51856 112 - . . scaffold40054 WUBlastX LTR_Ngaro 51734 51895 104 - . . scaffold40054 WUBlastX LTR_Ngaro 54250 54501 106 - . . scaffold40054 WUBlastX LTR_Ngaro 54250 54561 88 - . . scaffold40054 WUBlastX LTR_Ngaro 54250 55023 69 - . . scaffold40054 WUBlastX DNA_IS4EU 56840 57124 116 - . . scaffold40054 WUBlastX DNA_Kolobok-IS4 56855 57193 101 - . . scaffold40054 WUBlastX DNA_IS4EU 56855 57262 94 - . . scaffold40054 WUBlastX DNA_Sola 58591 58755 21 + . . scaffold40054 WUBlastX DNA_Sola 59007 59717 87 + . . scaffold40054 WUBlastX DNA_Sola 59331 59813 27 + . . scaffold40054 WUBlastX DNA_Sola 59942 60484 197 + . . scaffold40054 WUBlastX DNA_Sola 60826 61056 56 + . . scaffold40054 WUBlastX DNA_IS4EU 63504 63599 39 + . . scaffold40054 WUBlastX DNA_IS4EU 63825 63905 40 + . . scaffold40054 GLEAN mRNA 64924 65317 0.639612 - . ID=CGI_10003811; scaffold40054 GLEAN promoter 65318 66317 0.639612 - . ID=CGI_10003811; scaffold40054 WUBlastX LTR_Ngaro 65708 65803 28 + . . scaffold40054 WUBlastX LTR_Ngaro 65737 66063 62 + . . scaffold40054 WUBlastX LTR_Ngaro 65815 66063 134 + . . scaffold40054 WUBlastX LTR_Ngaro 66933 67055 26 + . . scaffold40054 WUBlastX LTR_Ngaro 66969 67055 41 + . . scaffold40054 WUBlastX LTR_Ngaro 67043 67234 109 + . . scaffold40054 WUBlastX LTR_Ngaro 75275 75883 296 + . . scaffold40054 WUBlastX LTR_Ngaro 76727 77086 80 + . . scaffold40054 WUBlastX LTR_Ngaro 76727 76948 82 + . . scaffold40054 WUBlastX LTR_Ngaro 77119 77526 110 + . . scaffold40054 WUBlastX LTR_Ngaro 77502 77957 23 + . . scaffold40054 WUBlastX LTR_Ngaro 77604 77957 58 + . . scaffold40054 WUBlastX DNA_TcMar-Tc1 79221 79304 32 - . . scaffold40054 WUBlastX DNA_TcMar-Tc1 79303 79899 173 - . . scaffold40068 TRF Tandem_Repeat 8921 9006 156 + . . scaffold40068 GLEAN mRNA 9125 13332 0.999994 - . ID=CGI_10003833; scaffold40068 GLEAN promoter 13333 14332 0.999994 - . ID=CGI_10003833; scaffold40068 TRF Tandem_Repeat 16733 16764 64 + . . scaffold40068 GLEAN mRNA 19069 31329 0.859479 - . ID=CGI_10003834; scaffold40068 TRF Tandem_Repeat 22757 22816 111 + . . scaffold40068 TRF Tandem_Repeat 23480 23532 52 + . . scaffold40068 GLEAN promoter 31330 32329 0.859479 - . ID=CGI_10003834; scaffold40068 GLEAN mRNA 33497 57280 0.493966 - . ID=CGI_10003835; scaffold40068 WUBlastX DNA_TcMar-Tc1 49583 49744 29 - . . scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 49965 78 - . . scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 49908 85 - . . scaffold40068 WUBlastX DNA_TcMar-Tc1 49753 50046 66 - . . scaffold40068 GLEAN promoter 57281 58280 0.493966 - . ID=CGI_10003835; scaffold40068 WUBlastX LINE_R2-Hero 69403 69474 20 - . . scaffold40068 WUBlastX LINE_LOA 69840 69971 21 - . . scaffold40068 WUBlastX LINE_RTE-X 69867 69968 80 - . . scaffold40068 WUBlastX LINE_CR1 69900 70709 84 - . . scaffold40068 WUBlastX LINE_RTE-X 69975 70649 183 - . . scaffold40068 WUBlastX LINE_CR1-L2 69996 70844 20 - . . scaffold40068 GLEAN mRNA 72316 74528 0.490659 - . ID=CGI_10003836; scaffold40068 TRF Tandem_Repeat 73754 73838 152 + . . scaffold40068 GLEAN promoter 74529 75528 0.490659 - . ID=CGI_10003836; scaffold40068 GLEAN promoter 75167 76166 0.999854 + . ID=CGI_10003837; scaffold40068 GLEAN mRNA 76167 80591 0.999854 + . ID=CGI_10003837; scaffold40072 TRF Tandem_Repeat 4 85 87 + . . scaffold40072 TRF Tandem_Repeat 4 70 84 + . . scaffold40072 TRF Tandem_Repeat 18 85 64 + . . scaffold40072 GLEAN mRNA 622 1333 1 - . ID=CGI_10003796; scaffold40072 GLEAN promoter 1334 2333 1 - . ID=CGI_10003796; scaffold40072 GLEAN mRNA 8334 16667 0.648545 - . ID=CGI_10003797; scaffold40072 TRF Tandem_Repeat 15328 15380 106 + . . scaffold40072 TRF Tandem_Repeat 15427 15453 54 + . . scaffold40072 GLEAN promoter 16668 17667 0.648545 - . ID=CGI_10003797; scaffold40072 TRF Tandem_Repeat 16981 17018 67 + . . scaffold40072 TRF Tandem_Repeat 18982 19060 81 + . . scaffold40072 TRF Tandem_Repeat 18983 19058 73 + . . scaffold40072 TRF Tandem_Repeat 18984 19057 67 + . . scaffold40072 TRF Tandem_Repeat 26756 26803 60 + . . scaffold40072 GLEAN mRNA 29567 34850 1 - . ID=CGI_10003798; scaffold40072 GLEAN promoter 34851 35850 1 - . ID=CGI_10003798; scaffold40072 GLEAN promoter 35977 36976 1 + . ID=CGI_10003799; scaffold40072 GLEAN mRNA 36977 45009 1 + . ID=CGI_10003799; scaffold40072 TRF Tandem_Repeat 42023 42066 61 + . . scaffold40072 GLEAN mRNA 43268 54476 0.776357 - . ID=CGI_10003800; scaffold40072 TRF Tandem_Repeat 49959 50007 80 + . . scaffold40072 TRF Tandem_Repeat 51616 51654 51 + . . scaffold40072 TRF Tandem_Repeat 51815 52087 185 + . . scaffold40072 GLEAN promoter 54477 55476 0.776357 - . ID=CGI_10003800; scaffold40072 TRF Tandem_Repeat 56750 56785 72 + . . scaffold40072 GLEAN mRNA 59559 75890 0.997172 - . ID=CGI_10003801; scaffold40072 GLEAN promoter 63504 64503 0.517995 + . ID=CGI_10003802; scaffold40072 TRF Tandem_Repeat 64139 64215 65 + . . scaffold40072 GLEAN mRNA 64504 65337 0.517995 + . ID=CGI_10003802; scaffold40072 WUBlastX DNA_Crypton 68980 69189 68 + . . scaffold40072 TRF Tandem_Repeat 70874 70907 68 + . . scaffold40072 TRF Tandem_Repeat 72615 72714 67 + . . scaffold40072 TRF Tandem_Repeat 72990 73062 119 + . . scaffold40072 TRF Tandem_Repeat 73457 73500 88 + . . scaffold40072 TRF Tandem_Repeat 73575 73623 50 + . . scaffold40072 GLEAN promoter 75891 76890 0.997172 - . ID=CGI_10003801; scaffold40076 GLEAN promoter 1 56 0.999624 + . ID=CGI_10003785; scaffold40076 GLEAN mRNA 57 15064 0.999624 + . ID=CGI_10003785; scaffold40076 TRF Tandem_Repeat 817 1179 71 + . . scaffold40076 TRF Tandem_Repeat 818 874 53 + . . scaffold40076 TRF Tandem_Repeat 818 1178 91 + . . scaffold40076 TRF Tandem_Repeat 842 886 54 + . . scaffold40076 TRF Tandem_Repeat 951 1178 66 + . . scaffold40076 TRF Tandem_Repeat 2445 2549 187 + . . scaffold40076 TRF Tandem_Repeat 4535 4559 50 + . . scaffold40076 TRF Tandem_Repeat 7782 8216 543 + . . scaffold40076 TRF Tandem_Repeat 11163 11213 93 + . . scaffold40076 TRF Tandem_Repeat 17882 17938 107 + . . scaffold40076 TRF Tandem_Repeat 18118 18156 69 + . . scaffold40076 TRF Tandem_Repeat 18154 18182 58 + . . scaffold40076 GLEAN promoter 19586 20585 1 + . ID=CGI_10003786; scaffold40076 GLEAN mRNA 20586 22033 1 + . ID=CGI_10003786; scaffold40076 TRF Tandem_Repeat 27344 27384 82 + . . scaffold40076 TRF Tandem_Repeat 27627 27672 85 + . . scaffold40076 TRF Tandem_Repeat 28880 28925 92 + . . scaffold40076 TRF Tandem_Repeat 32527 32579 106 + . . scaffold40076 TRF Tandem_Repeat 37262 37323 124 + . . scaffold40076 TRF Tandem_Repeat 43378 43441 119 + . . scaffold40076 TRF Tandem_Repeat 43537 43580 88 + . . scaffold40076 TRF Tandem_Repeat 43945 43989 90 + . . scaffold40076 TRF Tandem_Repeat 44816 44893 156 + . . scaffold40076 TRF Tandem_Repeat 44891 44922 64 + . . scaffold40076 GLEAN promoter 49026 50025 0.72657 + . ID=CGI_10003787; scaffold40076 GLEAN mRNA 50026 69256 0.72657 + . ID=CGI_10003787; scaffold40076 WUBlastX LTR_Gypsy 62408 62479 30 + . . scaffold40076 WUBlastX LTR_Gypsy-Cigr 62600 62827 89 + . . scaffold40076 WUBlastX LTR_Gypsy 62805 63179 133 + . . scaffold40076 TRF Tandem_Repeat 63575 63757 179 + . . scaffold40076 GLEAN mRNA 69511 69744 0.999663 - . ID=CGI_10003788; scaffold40076 GLEAN promoter 69745 70744 0.999663 - . ID=CGI_10003788; scaffold40076 GLEAN mRNA 69814 70946 0.450003 - . ID=CGI_10003789; scaffold40076 GLEAN promoter 70947 71946 0.450003 - . ID=CGI_10003789; scaffold40076 WUBlastX DNA_Harbinger 74514 74693 47 - . . scaffold40076 GLEAN mRNA 76978 77226 0.999984 - . ID=CGI_10003790; scaffold40076 GLEAN promoter 77227 78226 0.999984 - . ID=CGI_10003790; scaffold40076 TRF Tandem_Repeat 78287 78311 50 + . . scaffold40076 WUBlastX LTR_Ngaro 81071 82033 337 + . . scaffold40076 GLEAN promoter 81119 82118 0.999372 + . ID=CGI_10003791; scaffold40076 GLEAN mRNA 82119 82487 0.999372 + . ID=CGI_10003791; scaffold40080 TRF Tandem_Repeat 6388 6434 94 + . . scaffold40080 TRF Tandem_Repeat 11797 11884 167 + . . scaffold40080 GLEAN mRNA 23516 25927 0.997813 - . ID=CGI_10003844; scaffold40080 WUBlastX LINE_RTE-BovB 24259 24366 44 + . . scaffold40080 WUBlastX LINE_RTE-BovB 24514 25059 68 + . . scaffold40080 WUBlastX LINE_RTE-BovB 24649 25263 45 + . . scaffold40080 GLEAN promoter 25928 26927 0.997813 - . ID=CGI_10003844; scaffold40080 GLEAN mRNA 45524 71991 0.583639 - . ID=CGI_10003845; scaffold40080 WUBlastX LTR_Ngaro 61612 61962 90 - . . scaffold40080 WUBlastX LTR_Ngaro 61693 61962 109 - . . scaffold40080 WUBlastX DNA_Harbinger 65541 66032 393 + . . scaffold40080 WUBlastX DNA_Harbinger 67611 67874 124 - . . scaffold40080 WUBlastX DNA_Harbinger 67864 67983 23 - . . scaffold40080 GLEAN promoter 71992 72991 0.583639 - . ID=CGI_10003845; scaffold40080 TRF Tandem_Repeat 72855 73023 74 + . . scaffold40080 TRF Tandem_Repeat 72996 73069 71 + . . scaffold40084 GLEAN mRNA 2961 7169 0.777732 - . ID=CGI_10003812; scaffold40084 GLEAN promoter 6888 7887 0.999351 + . ID=CGI_10003813; scaffold40084 GLEAN promoter 7170 8169 0.777732 - . ID=CGI_10003812; scaffold40084 GLEAN mRNA 7888 22164 0.999351 + . ID=CGI_10003813; scaffold40084 GLEAN promoter 24760 25759 0.748372 + . ID=CGI_10003814; scaffold40084 GLEAN mRNA 25760 31590 0.748372 + . ID=CGI_10003814; scaffold40084 GLEAN promoter 31916 32915 1 + . ID=CGI_10003815; scaffold40084 GLEAN mRNA 32916 40193 1 + . ID=CGI_10003815; scaffold40084 GLEAN mRNA 41988 73482 0.999981 - . ID=CGI_10003816; scaffold40084 GLEAN promoter 73483 74482 0.999981 - . ID=CGI_10003816; scaffold40084 GLEAN promoter 75996 76995 0.996753 + . ID=CGI_10003817; scaffold40084 GLEAN mRNA 76996 81376 0.996753 + . ID=CGI_10003817; scaffold40088 TRF Tandem_Repeat 1226 1266 82 + . . scaffold40088 WUBlastX DNA_Harbinger 8611 8871 45 + . . scaffold40088 WUBlastX DNA_Harbinger 8617 8811 52 + . . scaffold40088 TRF Tandem_Repeat 9089 9160 135 + . . scaffold40088 TRF Tandem_Repeat 9708 9765 116 + . . scaffold40088 WUBlastX DNA_Harbinger 9812 9964 50 + . . scaffold40088 WUBlastX DNA_Harbinger 10136 10315 65 + . . scaffold40088 WUBlastX DNA_Harbinger 10139 10288 79 + . . scaffold40088 WUBlastX DNA_Harbinger 10395 10481 35 + . . scaffold40088 WUBlastX DNA_Harbinger 10401 10466 50 + . . scaffold40088 WUBlastX DNA_Harbinger 10710 10901 61 + . . scaffold40088 WUBlastX DNA_Harbinger 10740 10901 120 + . . scaffold40088 WUBlastX DNA_Harbinger 11032 11322 71 + . . scaffold40088 TRF Tandem_Repeat 11718 11744 54 + . . scaffold40088 GLEAN mRNA 12330 12545 0.618241 - . ID=CGI_10003846; scaffold40088 GLEAN promoter 12546 13545 0.618241 - . ID=CGI_10003846; scaffold40088 GLEAN mRNA 12914 15650 0.431831 - . ID=CGI_10003847; scaffold40088 GLEAN promoter 15651 16650 0.431831 - . ID=CGI_10003847; scaffold40088 TRF Tandem_Repeat 16474 16540 134 + . . scaffold40088 WUBlastX LINE_L1-Tx1 22062 22535 97 - . . scaffold40088 WUBlastX LTR_Gypsy 32284 32691 42 - . . scaffold40088 WUBlastX LTR_Gypsy 32446 32697 80 - . . scaffold40088 WUBlastX LTR_Gypsy 32500 32892 283 - . . scaffold40088 WUBlastX LTR_Gypsy 32741 34021 365 - . . scaffold40088 WUBlastX LTR_Gypsy 32945 34021 811 - . . scaffold40088 WUBlastX LTR_Gypsy 33922 34524 234 - . . scaffold40088 WUBlastX LTR_Gypsy 33964 34347 261 - . . scaffold40088 WUBlastX LTR_Gypsy 34345 34563 45 - . . scaffold40088 WUBlastX LTR_Gypsy 34363 34620 26 - . . scaffold40088 WUBlastX LTR_Gypsy 34765 34884 35 - . . scaffold40088 WUBlastX LTR_Gypsy 34884 35246 165 - . . scaffold40088 TRF Tandem_Repeat 42960 43015 103 + . . scaffold40088 GLEAN promoter 43013 44012 0.990448 + . ID=CGI_10003848; scaffold40088 GLEAN mRNA 44013 52846 0.990448 + . ID=CGI_10003848; scaffold40088 TRF Tandem_Repeat 45737 45810 55 + . . scaffold40088 TRF Tandem_Repeat 47052 47151 200 + . . scaffold40088 TRF Tandem_Repeat 47218 47260 77 + . . scaffold40088 GLEAN promoter 53161 54160 1 + . ID=CGI_10003849; scaffold40088 GLEAN mRNA 54161 61779 1 + . ID=CGI_10003849; scaffold40088 TRF Tandem_Repeat 56625 56762 140 + . . scaffold40088 GLEAN mRNA 67315 70475 0.937847 - . ID=CGI_10003850; scaffold40088 GLEAN promoter 70476 71475 0.937847 - . ID=CGI_10003850; scaffold40088 TRF Tandem_Repeat 82251 82293 70 + . . scaffold40088 TRF Tandem_Repeat 82252 82301 57 + . . scaffold40094 TRF Tandem_Repeat 597 745 90 + . . scaffold40094 TRF Tandem_Repeat 661 807 66 + . . scaffold40094 TRF Tandem_Repeat 2406 2449 72 + . . scaffold40094 GLEAN mRNA 3898 13481 0.999661 - . ID=CGI_10003838; scaffold40094 TRF Tandem_Repeat 6914 6962 98 + . . scaffold40094 GLEAN promoter 13482 14481 0.999661 - . ID=CGI_10003838; scaffold40094 GLEAN mRNA 24229 36576 0.552451 - . ID=CGI_10003839; scaffold40094 GLEAN promoter 36577 37576 0.552451 - . ID=CGI_10003839; scaffold40094 TRF Tandem_Repeat 38239 38321 166 + . . scaffold40094 GLEAN promoter 39541 40540 0.998789 + . ID=CGI_10003840; scaffold40094 GLEAN mRNA 40541 52410 0.998789 + . ID=CGI_10003840; scaffold40094 TRF Tandem_Repeat 43957 44010 108 + . . scaffold40094 TRF Tandem_Repeat 50313 50349 74 + . . scaffold40094 GLEAN mRNA 54208 58092 1 - . ID=CGI_10003841; scaffold40094 GLEAN promoter 57391 58390 1 + . ID=CGI_10003842; scaffold40094 TRF Tandem_Repeat 57558 57602 90 + . . scaffold40094 GLEAN promoter 58093 59092 1 - . ID=CGI_10003841; scaffold40094 GLEAN mRNA 58391 65550 1 + . ID=CGI_10003842; scaffold40094 TRF Tandem_Repeat 62407 62443 74 + . . scaffold40094 WUBlastX DNA_Zator 63816 64013 74 - . . scaffold40094 WUBlastX DNA_Zator 64172 64255 30 - . . scaffold40094 GLEAN promoter 64570 65569 0.953207 + . ID=CGI_10003843; scaffold40094 GLEAN mRNA 65570 83756 0.953207 + . ID=CGI_10003843; scaffold40094 TRF Tandem_Repeat 77143 77221 95 + . . scaffold40094 TRF Tandem_Repeat 77195 77228 50 + . . scaffold401 GLEAN promoter 7376 8375 0.998672 + . ID=CGI_10006983; scaffold401 GLEAN mRNA 8376 27637 0.998672 + . ID=CGI_10006983; scaffold401 WUBlastX DNA_TcMar-Tc1 9882 10649 83 + . . scaffold401 WUBlastX DNA_TcMar-Tc1 10503 10676 60 + . . scaffold401 GLEAN promoter 28157 29156 1 + . ID=CGI_10006984; scaffold401 GLEAN mRNA 29157 37330 1 + . ID=CGI_10006984; scaffold401 GLEAN promoter 37798 38797 1 + . ID=CGI_10006985; scaffold401 GLEAN promoter 38619 39618 0.558315 + . ID=CGI_10006986; scaffold401 GLEAN mRNA 38798 39091 1 + . ID=CGI_10006985; scaffold401 GLEAN mRNA 39619 39981 0.558315 + . ID=CGI_10006986; scaffold401 TRF Tandem_Repeat 40402 40429 56 + . . scaffold401 GLEAN mRNA 44136 46085 0.999939 - . ID=CGI_10006987; scaffold401 GLEAN promoter 46086 47085 0.999939 - . ID=CGI_10006987; scaffold401 GLEAN promoter 49764 50763 0.624608 + . ID=CGI_10006988; scaffold401 GLEAN mRNA 50764 71484 0.624608 + . ID=CGI_10006988; scaffold401 GLEAN mRNA 52113 57245 1 - . ID=CGI_10006989; scaffold401 GLEAN promoter 57246 58245 1 - . ID=CGI_10006989; scaffold401 TRF Tandem_Repeat 64283 64310 56 + . . scaffold401 TRF Tandem_Repeat 64437 64502 123 + . . scaffold401 WUBlastX DNA_Sola 78050 78745 99 + . . scaffold401 GLEAN mRNA 89024 99252 0.544397 - . ID=CGI_10006990; scaffold401 GLEAN promoter 99253 100252 0.544397 - . ID=CGI_10006990; scaffold401 GLEAN promoter 120069 121068 0.969372 + . ID=CGI_10006991; scaffold401 WUBlastX LTR_Gypsy 120247 120921 142 + . . scaffold401 WUBlastX LTR_Gypsy 120247 120792 284 + . . scaffold401 GLEAN mRNA 121069 122067 0.969372 + . ID=CGI_10006991; scaffold401 TRF Tandem_Repeat 131867 131898 64 + . . scaffold401 GLEAN promoter 132558 133557 0.958767 + . ID=CGI_10006992; scaffold401 GLEAN mRNA 133558 144464 0.958767 + . ID=CGI_10006992; scaffold401 TRF Tandem_Repeat 143932 143988 114 + . . scaffold401 GLEAN mRNA 148446 149199 0.999985 - . ID=CGI_10006993; scaffold401 GLEAN promoter 149200 150199 0.999985 - . ID=CGI_10006993; scaffold401 GLEAN promoter 150217 151216 0.728444 + . ID=CGI_10006994; scaffold401 GLEAN mRNA 151217 157765 0.728444 + . ID=CGI_10006994; scaffold401 WUBlastX LINE_RTE-BovB 155825 156112 77 - . . scaffold401 WUBlastX LINE_RTE-X 156135 156413 99 - . . scaffold401 WUBlastX LINE_RTE-X 156159 156374 102 - . . scaffold401 WUBlastX LINE_RTE-X 156382 156531 33 - . . scaffold401 WUBlastX LINE_RTE-X 156382 156465 35 - . . scaffold40100 WUBlastX LINE_LOA 5160 5561 25 - . . scaffold40100 WUBlastX LINE_CR1 5229 5624 214 - . . scaffold40100 WUBlastX LINE_CR1 5593 6201 239 - . . scaffold40100 WUBlastX LINE_CR1 5593 6003 286 - . . scaffold40100 WUBlastX DNA_IS4EU 6480 6644 115 + . . scaffold40100 TRF Tandem_Repeat 15467 15514 96 + . . scaffold40100 GLEAN mRNA 15941 21893 0.406399 - . ID=CGI_10003868; scaffold40100 TRF Tandem_Repeat 18391 18423 66 + . . scaffold40100 GLEAN promoter 21894 22893 0.406399 - . ID=CGI_10003868; scaffold40100 TRF Tandem_Repeat 29228 29260 57 + . . scaffold40100 TRF Tandem_Repeat 29617 29662 92 + . . scaffold40100 TRF Tandem_Repeat 35035 35086 104 + . . scaffold40100 GLEAN promoter 37291 38290 0.988958 + . ID=CGI_10003869; scaffold40100 TRF Tandem_Repeat 37957 38016 120 + . . scaffold40100 GLEAN mRNA 38291 43783 0.988958 + . ID=CGI_10003869; scaffold40100 GLEAN promoter 62252 63251 0.942183 + . ID=CGI_10003870; scaffold40100 GLEAN mRNA 63252 66328 0.942183 + . ID=CGI_10003870; scaffold40100 GLEAN mRNA 70276 80385 1 - . ID=CGI_10003871; scaffold40100 TRF Tandem_Repeat 74225 74256 55 + . . scaffold40100 TRF Tandem_Repeat 76172 76203 55 + . . scaffold40100 GLEAN promoter 80386 81385 1 - . ID=CGI_10003871; scaffold40100 GLEAN promoter 81350 82349 1 + . ID=CGI_10003872; scaffold40100 TRF Tandem_Repeat 81922 81956 63 + . . scaffold40100 GLEAN mRNA 82350 85069 1 + . ID=CGI_10003872; scaffold40100 TRF Tandem_Repeat 84837 84877 82 + . . scaffold40104 WUBlastX LINE_L2 6175 6921 146 + . . scaffold40104 WUBlastX LINE_L1 6316 6957 256 + . . scaffold40104 WUBlastX LINE_L1 6469 7098 67 + . . scaffold40104 WUBlastX LINE_RTE-X 7156 10602 941 + . . scaffold40104 WUBlastX LINE_RTE-X 8254 10602 1125 + . . scaffold40104 TRF Tandem_Repeat 11674 11743 131 + . . scaffold40104 TRF Tandem_Repeat 14065 14113 55 + . . scaffold40104 WUBlastX LINE_L1 14306 14344 20 - . . scaffold40104 WUBlastX LINE_L1-Tx1 14440 14775 146 - . . scaffold40104 WUBlastX LINE_L1-Tx1 14753 16558 963 - . . scaffold40104 WUBlastX LINE_L1 16533 16877 54 - . . scaffold40104 WUBlastX LINE_L1-Tx1 16593 16859 113 - . . scaffold40104 GLEAN mRNA 23202 39290 0.364513 - . ID=CGI_10003867; scaffold40104 TRF Tandem_Repeat 24009 24043 54 + . . scaffold40104 TRF Tandem_Repeat 26945 27007 117 + . . scaffold40104 WUBlastX DNA_IS4EU 34871 35101 22 + . . scaffold40104 WUBlastX DNA_Kolobok-IS4 35526 35732 21 + . . scaffold40104 WUBlastX DNA_Kolobok-IS4 35526 35669 29 + . . scaffold40104 WUBlastX DNA_IS4EU 35775 36605 129 + . . scaffold40104 WUBlastX DNA_IS4EU 36123 36509 172 + . . scaffold40104 WUBlastX DNA_IS4EU 37515 37913 227 - . . scaffold40104 WUBlastX DNA_Kolobok-IS4 37897 38400 168 - . . scaffold40104 GLEAN promoter 39291 40290 0.364513 - . ID=CGI_10003867; scaffold40104 TRF Tandem_Repeat 49853 49900 96 + . . scaffold40104 TRF Tandem_Repeat 50071 50132 70 + . . scaffold40104 WUBlastX DNA_TcMar-Marin 53005 53199 55 + . . scaffold40104 WUBlastX DNA_TcMar-Marin 53011 53142 65 + . . scaffold40104 WUBlastX DNA_Harbinger 54025 54168 44 + . . scaffold40104 TRF Tandem_Repeat 54570 54638 138 + . . scaffold40104 TRF Tandem_Repeat 54636 54700 130 + . . scaffold40104 WUBlastX DNA_Harbinger 54758 54862 43 + . . scaffold40104 TRF Tandem_Repeat 67931 67962 64 + . . scaffold40104 WUBlastX LTR_Gypsy 70814 71536 128 + . . scaffold40104 WUBlastX LTR_Gypsy-Cigr 70865 71461 165 + . . scaffold40104 WUBlastX LTR_Gypsy-Cigr 70976 71455 187 + . . scaffold40104 WUBlastX LTR_Gypsy 71381 71578 27 + . . scaffold40104 WUBlastX LTR_Gypsy 72550 73026 27 + . . scaffold40104 WUBlastX LTR_Gypsy-Cigr 72634 74505 985 + . . scaffold40106 GLEAN mRNA 889 12072 0.999949 - . ID=CGI_10003851; scaffold40106 TRF Tandem_Repeat 2316 2476 313 + . . scaffold40106 TRF Tandem_Repeat 5699 5726 56 + . . scaffold40106 GLEAN promoter 12073 13072 0.999949 - . ID=CGI_10003851; scaffold40106 TRF Tandem_Repeat 13802 13992 152 + . . scaffold40106 GLEAN mRNA 13995 15904 1 - . ID=CGI_10003852; scaffold40106 GLEAN promoter 15905 16904 1 - . ID=CGI_10003852; scaffold40106 WUBlastX LINE_L2 17082 17414 91 + . . scaffold40106 WUBlastX LINE_L2 17417 17539 46 + . . scaffold40106 GLEAN promoter 17858 18857 1 + . ID=CGI_10003853; scaffold40106 TRF Tandem_Repeat 17931 17958 56 + . . scaffold40106 GLEAN mRNA 18858 22482 1 + . ID=CGI_10003853; scaffold40106 TRF Tandem_Repeat 24601 24655 110 + . . scaffold40106 GLEAN mRNA 25562 34769 1 - . ID=CGI_10003854; scaffold40106 TRF Tandem_Repeat 30725 30954 336 + . . scaffold40106 TRF Tandem_Repeat 30725 31313 786 + . . scaffold40106 TRF Tandem_Repeat 30725 31313 786 + . . scaffold40106 TRF Tandem_Repeat 30947 31313 527 + . . scaffold40106 TRF Tandem_Repeat 32947 33134 152 + . . scaffold40106 TRF Tandem_Repeat 33203 33237 70 + . . scaffold40106 GLEAN promoter 34770 35769 1 - . ID=CGI_10003854; scaffold40106 GLEAN promoter 37615 38614 1 + . ID=CGI_10003855; scaffold40106 GLEAN mRNA 38615 39998 1 + . ID=CGI_10003855; scaffold40106 GLEAN mRNA 43451 51495 0.999465 - . ID=CGI_10003856; scaffold40106 TRF Tandem_Repeat 45347 45422 143 + . . scaffold40106 TRF Tandem_Repeat 47973 48100 96 + . . scaffold40106 WUBlastX LINE_RTE-X 50855 51097 54 - . . scaffold40106 WUBlastX LINE_RTE-X 51049 51279 72 - . . scaffold40106 GLEAN promoter 51496 52495 0.999465 - . ID=CGI_10003856; scaffold40106 GLEAN promoter 51788 52787 0.518217 + . ID=CGI_10003857; scaffold40106 GLEAN mRNA 52788 54816 0.518217 + . ID=CGI_10003857; scaffold40106 TRF Tandem_Repeat 60644 60680 74 + . . scaffold40106 WUBlastX LINE_Proto2 63915 64214 80 + . . scaffold40106 WUBlastX LINE_Proto2 64375 65490 165 + . . scaffold40106 GLEAN mRNA 69383 70052 0.378085 - . ID=CGI_10003858; scaffold40106 GLEAN promoter 70053 71052 0.378085 - . ID=CGI_10003858; scaffold40106 GLEAN mRNA 70414 73688 0.753117 - . ID=CGI_10003859; scaffold40106 TRF Tandem_Repeat 71751 71811 122 + . . scaffold40106 GLEAN promoter 72555 73554 0.963048 + . ID=CGI_10003860; scaffold40106 GLEAN mRNA 73555 80690 0.963048 + . ID=CGI_10003860; scaffold40106 GLEAN promoter 73689 74688 0.753117 - . ID=CGI_10003859; scaffold40106 TRF Tandem_Repeat 77210 77259 75 + . . scaffold40106 TRF Tandem_Repeat 77641 77684 88 + . . scaffold40114 GLEAN promoter 2390 3389 0.725967 + . ID=CGI_10003917; scaffold40114 TRF Tandem_Repeat 2926 3012 93 + . . scaffold40114 TRF Tandem_Repeat 2960 3202 133 + . . scaffold40114 GLEAN mRNA 3390 6147 0.725967 + . ID=CGI_10003917; scaffold40114 TRF Tandem_Repeat 6913 6988 56 + . . scaffold40114 GLEAN mRNA 8188 18626 0.997565 - . ID=CGI_10003918; scaffold40114 TRF Tandem_Repeat 15625 15677 56 + . . scaffold40114 GLEAN promoter 18627 19626 0.997565 - . ID=CGI_10003918; scaffold40114 GLEAN promoter 19826 20825 0.999548 + . ID=CGI_10003919; scaffold40114 GLEAN mRNA 20826 33927 0.999548 + . ID=CGI_10003919; scaffold40114 WUBlastX LINE_CR1-L2 21571 21756 37 + . . scaffold40114 WUBlastX LINE_CR1-L2 21601 21744 57 + . . scaffold40114 WUBlastX LINE_L2 21758 21955 81 + . . scaffold40114 TRF Tandem_Repeat 23048 23106 109 + . . scaffold40114 TRF Tandem_Repeat 28066 28092 54 + . . scaffold40114 GLEAN mRNA 34351 40629 0.999949 - . ID=CGI_10003920; scaffold40114 TRF Tandem_Repeat 39037 39093 114 + . . scaffold40114 GLEAN promoter 40630 41629 0.999949 - . ID=CGI_10003920; scaffold40114 TRF Tandem_Repeat 42257 42286 51 + . . scaffold40114 GLEAN promoter 42831 43830 0.989059 + . ID=CGI_10003921; scaffold40114 GLEAN mRNA 43831 56519 0.989059 + . ID=CGI_10003921; scaffold40114 TRF Tandem_Repeat 47690 47744 110 + . . scaffold40114 GLEAN mRNA 57343 66307 0.993477 - . ID=CGI_10003922; scaffold40114 TRF Tandem_Repeat 63502 63576 132 + . . scaffold40114 GLEAN promoter 66308 67307 0.993477 - . ID=CGI_10003922; scaffold40114 TRF Tandem_Repeat 71717 71744 56 + . . scaffold40114 GLEAN promoter 79666 80665 0.999804 + . ID=CGI_10003923; scaffold40114 GLEAN mRNA 80666 85297 0.999804 + . ID=CGI_10003923; scaffold40120 TRF Tandem_Repeat 733 1299 546 + . . scaffold40120 GLEAN mRNA 29186 38797 0.813469 - . ID=CGI_10003877; scaffold40120 TRF Tandem_Repeat 32595 32636 68 + . . scaffold40120 TRF Tandem_Repeat 32596 32633 51 + . . scaffold40120 GLEAN promoter 38798 39797 0.813469 - . ID=CGI_10003877; scaffold40120 TRF Tandem_Repeat 40097 40138 50 + . . scaffold40120 TRF Tandem_Repeat 40101 40143 54 + . . scaffold40120 GLEAN mRNA 40469 53773 0.981641 - . ID=CGI_10003878; scaffold40120 TRF Tandem_Repeat 49242 49317 55 + . . scaffold40120 TRF Tandem_Repeat 50397 51258 1118 + . . scaffold40120 GLEAN promoter 52643 53642 0.999676 + . ID=CGI_10003879; scaffold40120 GLEAN mRNA 53643 82923 0.999676 + . ID=CGI_10003879; scaffold40120 GLEAN promoter 53774 54773 0.981641 - . ID=CGI_10003878; scaffold40120 TRF Tandem_Repeat 61431 61520 80 + . . scaffold40120 TRF Tandem_Repeat 63147 63176 60 + . . scaffold40120 WUBlastX LINE_L1-Tx1 69162 69512 68 + . . scaffold40120 TRF Tandem_Repeat 84467 84503 74 + . . scaffold40134 TRF Tandem_Repeat 14533 15741 1327 + . . scaffold40134 TRF Tandem_Repeat 14598 15738 1542 + . . scaffold40134 GLEAN mRNA 15809 25737 0.833725 - . ID=CGI_10003880; scaffold40134 TRF Tandem_Repeat 24116 24890 1062 + . . scaffold40134 GLEAN promoter 25738 26737 0.833725 - . ID=CGI_10003880; scaffold40134 GLEAN mRNA 26792 31648 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 27904 28236 32 + . . scaffold40134 WUBlastX DNA_Harbinger 27976 28320 99 + . . scaffold40134 WUBlastX DNA_Harbinger 28069 28320 106 + . . scaffold40134 WUBlastX DNA_Harbinger 29011 29136 116 + . . scaffold40134 WUBlastX DNA_Harbinger 29353 29472 69 + . . scaffold40134 WUBlastX DNA_Harbinger 29537 29767 83 + . . scaffold40134 WUBlastX DNA_Harbinger 29576 29746 123 + . . scaffold40134 WUBlastX DNA_Harbinger 29955 30140 31 + . . scaffold40134 TRF Tandem_Repeat 30223 30259 65 + . . scaffold40134 GLEAN promoter 31649 32648 0.922114 - . ID=CGI_10003881; scaffold40134 WUBlastX DNA_Harbinger 33540 33950 91 + . . scaffold40134 WUBlastX DNA_Harbinger 33576 33920 126 + . . scaffold40134 WUBlastX DNA_Harbinger 34404 34553 48 + . . scaffold40134 WUBlastX DNA_Harbinger 34431 34553 74 + . . scaffold40134 WUBlastX DNA_Harbinger 34690 34830 43 + . . scaffold40134 WUBlastX DNA_Harbinger 34720 34806 47 + . . scaffold40134 WUBlastX DNA_Harbinger 34839 35168 21 + . . scaffold40134 WUBlastX DNA_Harbinger 34893 35090 117 + . . scaffold40134 WUBlastX DNA_Harbinger 35230 35427 61 + . . scaffold40134 GLEAN mRNA 35614 38090 0.665574 - . ID=CGI_10003882; scaffold40134 WUBlastX DNA_Harbinger 36950 37096 44 - . . scaffold40134 GLEAN promoter 38091 39090 0.665574 - . ID=CGI_10003882; scaffold40134 GLEAN promoter 38336 39335 0.319501 + . ID=CGI_10003883; scaffold40134 GLEAN mRNA 39336 73471 0.319501 + . ID=CGI_10003883; scaffold40134 WUBlastX LINE_Penelope 39631 39792 45 + . . scaffold40134 WUBlastX LINE_Penelope 39667 40224 145 + . . scaffold40134 WUBlastX LINE_Penelope 39670 40131 160 + . . scaffold40134 WUBlastX DNA_Maverick 40993 42090 657 - . . scaffold40134 WUBlastX LTR_Gypsy 42459 42632 21 - . . scaffold40134 WUBlastX DNA_Maverick 43116 43736 389 - . . scaffold40134 TRF Tandem_Repeat 43743 43790 51 + . . scaffold40134 TRF Tandem_Repeat 43743 43946 149 + . . scaffold40134 TRF Tandem_Repeat 43870 43940 61 + . . scaffold40134 WUBlastX DNA_Maverick 44752 46563 1492 - . . scaffold40134 WUBlastX DNA_Maverick 50113 50799 316 - . . scaffold40134 WUBlastX DNA_Maverick 50796 50885 29 - . . scaffold40134 WUBlastX DNA_Maverick 50876 51160 179 - . . scaffold40134 TRF Tandem_Repeat 68146 68209 110 + . . scaffold40134 TRF Tandem_Repeat 68378 68411 68 + . . scaffold40134 WUBlastX LINE_RTE-X 69439 69762 149 + . . scaffold40134 WUBlastX LINE_RTE-X 69442 69819 143 + . . scaffold40134 WUBlastX LINE_RTE-X 69800 69946 49 + . . scaffold40134 WUBlastX LINE_RTE-X 69860 69964 40 + . . scaffold40134 WUBlastX LINE_RTE-X 69975 70445 53 + . . scaffold40134 WUBlastX LINE_RTE-X 70053 70409 117 + . . scaffold40134 WUBlastX LINE_RTE-X 70083 70562 55 + . . scaffold40134 TRF Tandem_Repeat 77159 77185 54 + . . scaffold40134 GLEAN promoter 83559 84558 0.6496 + . ID=CGI_10003884; scaffold40134 GLEAN mRNA 84559 84765 0.6496 + . ID=CGI_10003884; scaffold40140 TRF Tandem_Repeat 2139 2193 110 + . . scaffold40140 WUBlastX LTR_Gypsy 37381 39186 1416 - . . scaffold40140 WUBlastX LTR_Gypsy 39033 39530 50 - . . scaffold40140 WUBlastX LTR_Gypsy 39276 40193 100 - . . scaffold40140 WUBlastX LTR_Gypsy 39477 40274 403 - . . scaffold40140 GLEAN mRNA 45328 46938 0.648545 - . ID=CGI_10003894; scaffold40140 GLEAN promoter 46939 47938 0.648545 - . ID=CGI_10003894; scaffold40140 TRF Tandem_Repeat 73178 73242 130 + . . scaffold40140 TRF Tandem_Repeat 82845 83087 211 + . . scaffold40140 TRF Tandem_Repeat 82970 83092 90 + . . scaffold40150 GLEAN promoter 20688 21687 1 + . ID=CGI_10003903; scaffold40150 GLEAN mRNA 21688 22704 1 + . ID=CGI_10003903; scaffold40150 TRF Tandem_Repeat 25330 25570 422 + . . scaffold40150 GLEAN mRNA 29084 44597 0.998505 - . ID=CGI_10003904; scaffold40150 TRF Tandem_Repeat 35932 36068 175 + . . scaffold40150 TRF Tandem_Repeat 36969 37287 372 + . . scaffold40150 TRF Tandem_Repeat 42940 43016 154 + . . scaffold40150 GLEAN promoter 44598 45597 0.998505 - . ID=CGI_10003904; scaffold40150 GLEAN promoter 45299 46298 0.802179 + . ID=CGI_10003905; scaffold40150 GLEAN mRNA 46299 54494 0.802179 + . ID=CGI_10003905; scaffold40150 GLEAN mRNA 50283 53687 0.999676 - . ID=CGI_10003906; scaffold40150 GLEAN promoter 53688 54687 0.999676 - . ID=CGI_10003906; scaffold40150 GLEAN mRNA 60227 61510 0.998077 - . ID=CGI_10003907; scaffold40150 GLEAN promoter 61511 62510 0.998077 - . ID=CGI_10003907; scaffold40150 TRF Tandem_Repeat 64693 64737 90 + . . scaffold40150 TRF Tandem_Repeat 65201 65301 82 + . . scaffold40150 WUBlastX LINE_L2 70302 71486 478 - . . scaffold40150 WUBlastX LINE_L2 71516 71965 105 - . . scaffold40150 WUBlastX LINE_CR1-L2 71519 71779 202 - . . scaffold40150 WUBlastX LINE_CR1 71525 71848 147 - . . scaffold40150 WUBlastX LINE_CR1 72934 73125 49 - . . scaffold40150 WUBlastX LINE_CR1 73006 73125 75 - . . scaffold40150 WUBlastX LINE_CR1-L2 73137 73688 182 - . . scaffold40150 WUBlastX LINE_L2 73386 73754 31 - . . scaffold40150 GLEAN promoter 75240 76239 0.852726 + . ID=CGI_10003908; scaffold40150 GLEAN mRNA 76240 77795 0.852726 + . ID=CGI_10003908; scaffold40150 GLEAN promoter 77076 78075 0.380369 + . ID=CGI_10003909; scaffold40150 GLEAN mRNA 78076 80105 0.380369 + . ID=CGI_10003909; scaffold40150 GLEAN mRNA 81395 82433 1 - . ID=CGI_10003910; scaffold40150 GLEAN promoter 82434 83433 1 - . ID=CGI_10003910; scaffold40154 TRF Tandem_Repeat 29 54 52 + . . scaffold40154 TRF Tandem_Repeat 224 281 80 + . . scaffold40154 TRF Tandem_Repeat 397 427 62 + . . scaffold40154 TRF Tandem_Repeat 588 650 126 + . . scaffold40154 GLEAN promoter 2558 3557 1 + . ID=CGI_10003873; scaffold40154 GLEAN mRNA 3558 8285 1 + . ID=CGI_10003873; scaffold40154 TRF Tandem_Repeat 9929 10086 185 + . . scaffold40154 TRF Tandem_Repeat 9945 10167 112 + . . scaffold40154 GLEAN promoter 12013 13012 0.739024 + . ID=CGI_10003874; scaffold40154 GLEAN mRNA 13013 17221 0.739024 + . ID=CGI_10003874; scaffold40154 TRF Tandem_Repeat 20100 20284 343 + . . scaffold40154 TRF Tandem_Repeat 20711 20827 177 + . . scaffold40154 GLEAN mRNA 26301 32486 0.434456 - . ID=CGI_10003875; scaffold40154 WUBlastX LTR_Ngaro 27378 27485 21 - . . scaffold40154 WUBlastX LTR_Ngaro 27520 28065 230 - . . scaffold40154 WUBlastX LTR_Ngaro 28046 28267 146 - . . scaffold40154 GLEAN promoter 32487 33486 0.434456 - . ID=CGI_10003875; scaffold40154 WUBlastX LTR_DIRS 32633 33076 73 - . . scaffold40154 GLEAN mRNA 36766 58435 0.701578 - . ID=CGI_10003876; scaffold40154 GLEAN promoter 58436 59435 0.701578 - . ID=CGI_10003876; scaffold40154 WUBlastX DNA_Sola 68275 68583 42 + . . scaffold40154 WUBlastX DNA_Sola 68615 68674 21 + . . scaffold40154 TRF Tandem_Repeat 73966 74749 1388 + . . scaffold40154 TRF Tandem_Repeat 73966 74749 1370 + . . scaffold40154 TRF Tandem_Repeat 81009 81054 92 + . . scaffold40156 TRF Tandem_Repeat 10630 10655 52 + . . scaffold40156 WUBlastX LINE_L2 17729 17974 66 + . . scaffold40156 WUBlastX LINE_CR1-L2 17810 18022 84 + . . scaffold40156 WUBlastX LINE_CR1 17983 18162 65 + . . scaffold40156 WUBlastX LINE_CR1 17983 18105 77 + . . scaffold40156 WUBlastX LINE_L2 19037 19168 20 + . . scaffold40156 WUBlastX LINE_CR1-L2 19073 19165 32 + . . scaffold40156 WUBlastX LINE_CR1-L2 19073 19282 30 + . . scaffold40156 WUBlastX LINE_CR1 19073 19216 32 + . . scaffold40156 WUBlastX LINE_Rex-Babar 19341 19532 43 + . . scaffold40156 WUBlastX LINE_CR1-L2 19362 19523 69 + . . scaffold40156 WUBlastX LINE_CR1-L2 19528 19731 41 + . . scaffold40156 WUBlastX LINE_L2 19651 19782 24 + . . scaffold40156 GLEAN mRNA 22088 22725 1 - . ID=CGI_10003885; scaffold40156 GLEAN promoter 22726 23725 1 - . ID=CGI_10003885; scaffold40156 WUBlastX DNA_TcMar-Tc2 27418 27621 71 - . . scaffold40156 GLEAN mRNA 39634 67829 0.679275 - . ID=CGI_10003886; scaffold40156 TRF Tandem_Repeat 40272 40311 53 + . . scaffold40156 TRF Tandem_Repeat 40657 40898 282 + . . scaffold40156 TRF Tandem_Repeat 40660 40862 131 + . . scaffold40156 TRF Tandem_Repeat 40677 40741 68 + . . scaffold40156 TRF Tandem_Repeat 41721 41967 313 + . . scaffold40156 TRF Tandem_Repeat 41742 41838 56 + . . scaffold40156 TRF Tandem_Repeat 41887 42040 190 + . . scaffold40156 TRF Tandem_Repeat 60963 61008 92 + . . scaffold40156 GLEAN promoter 67830 68829 0.679275 - . ID=CGI_10003886; scaffold40156 GLEAN mRNA 68037 70868 1 - . ID=CGI_10003887; scaffold40156 GLEAN promoter 70869 71868 1 - . ID=CGI_10003887; scaffold40156 WUBlastX LINE_RTE-X 77816 77947 83 + . . scaffold40156 WUBlastX LTR_Gypsy-Cigr 79876 80082 60 + . . scaffold40156 WUBlastX LTR_Gypsy 82647 82745 20 + . . scaffold40156 WUBlastX LTR_Gypsy 82680 82748 26 + . . scaffold40156 WUBlastX LTR_Gypsy 82741 83196 65 + . . scaffold40156 WUBlastX LTR_Gypsy 82741 83028 149 + . . scaffold40156 WUBlastX LINE_CR1 83958 84131 45 + . . scaffold40156 WUBlastX LINE_L2 84196 84282 62 + . . scaffold40156 WUBlastX LINE_CR1-L2 84623 84721 23 + . . scaffold40162 GLEAN promoter 21266 22265 0.998122 + . ID=CGI_10003924; scaffold40162 GLEAN mRNA 22266 46224 0.998122 + . ID=CGI_10003924; scaffold40164 GLEAN mRNA 2839 12364 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1 7681 7743 24 + . . scaffold40164 WUBlastX LINE_L1-Tx1 7681 7722 27 + . . scaffold40164 WUBlastX LINE_L1-Tx1 7751 7945 63 + . . scaffold40164 WUBlastX LINE_L1-Tx1 7760 8008 59 + . . scaffold40164 WUBlastX LINE_L1 8043 8123 33 + . . scaffold40164 WUBlastX LINE_L1-Tx1 8058 8108 34 + . . scaffold40164 WUBlastX LINE_L1-Tx1 8156 8401 20 + . . scaffold40164 WUBlastX LINE_L1-Tx1 8255 8404 37 + . . scaffold40164 TRF Tandem_Repeat 9810 9870 122 + . . scaffold40164 GLEAN promoter 12365 13364 0.429437 - . ID=CGI_10003898; scaffold40164 WUBlastX LINE_L1-Tx1 35060 36673 143 - . . scaffold40164 WUBlastX LINE_L1-Tx1 35321 36673 201 - . . scaffold40164 WUBlastX LINE_L1-Tx1 36663 38330 703 - . . scaffold40164 TRF Tandem_Repeat 38631 38703 78 + . . scaffold40164 TRF Tandem_Repeat 38634 38695 90 + . . scaffold40164 GLEAN mRNA 49830 55366 0.971013 - . ID=CGI_10003900; scaffold40164 GLEAN promoter 55367 56366 0.971013 - . ID=CGI_10003900; scaffold40164 WUBlastX LINE_RTE-X 59776 59970 44 - . . scaffold40164 TRF Tandem_Repeat 63920 63981 124 + . . scaffold40164 GLEAN promoter 78139 79138 0.97257 + . ID=CGI_10003902; scaffold40164 GLEAN mRNA 79139 85181 0.97257 + . ID=CGI_10003902; scaffold40164 TRF Tandem_Repeat 79462 79505 88 + . . scaffold40172 WUBlastX DNA_Harbinger 2243 2356 50 + . . scaffold40172 WUBlastX DNA_Harbinger 2353 2655 115 + . . scaffold40172 WUBlastX DNA_Harbinger 2646 2867 126 + . . scaffold40172 WUBlastX DNA_Harbinger 2849 3172 100 + . . scaffold40172 WUBlastX DNA_Harbinger 2870 3070 102 + . . scaffold40172 WUBlastX DNA_Harbinger 3979 4251 111 - . . scaffold40172 GLEAN promoter 5995 6994 0.895984 + . ID=CGI_10003930; scaffold40172 GLEAN mRNA 6995 45177 0.895984 + . ID=CGI_10003930; scaffold40172 WUBlastX LINE_L1-Tx1 12001 12177 45 + . . scaffold40172 WUBlastX LINE_L1-Tx1 12176 12919 230 + . . scaffold40172 WUBlastX LINE_L1-Tx1 12927 13469 58 + . . scaffold40172 WUBlastX LINE_L1-Tx1 12951 13388 73 + . . scaffold40172 TRF Tandem_Repeat 37076 37145 131 + . . scaffold40172 WUBlastX LINE_L1-Tx1 37356 37520 31 - . . scaffold40172 WUBlastX LINE_L1 37383 37520 50 - . . scaffold40172 TRF Tandem_Repeat 47445 47500 71 + . . scaffold40172 TRF Tandem_Repeat 47449 47503 65 + . . scaffold40172 TRF Tandem_Repeat 47779 47845 89 + . . scaffold40172 TRF Tandem_Repeat 55366 55405 55 + . . scaffold40172 WUBlastX LINE_L1-Tx1 55703 55921 40 - . . scaffold40172 TRF Tandem_Repeat 56043 57005 1480 + . . scaffold40172 WUBlastX LTR_DIRS 58049 58726 145 + . . scaffold40172 WUBlastX LTR_DIRS 58277 58846 222 + . . scaffold40172 WUBlastX LTR_DIRS 58849 59181 71 + . . scaffold40172 WUBlastX LTR_DIRS 58912 59181 109 + . . scaffold40172 WUBlastX LTR_DIRS 59175 60722 573 + . . scaffold40172 WUBlastX LTR_DIRS 60754 61776 323 + . . scaffold40172 WUBlastX LTR_DIRS 61087 61773 368 + . . scaffold40172 WUBlastX LINE_L1-Tx1 62441 62836 38 - . . scaffold40172 WUBlastX LINE_L1-Tx1 62459 62734 90 - . . scaffold40172 WUBlastX LINE_L1-Tx1 62781 63482 310 - . . scaffold40172 WUBlastX LINE_L1-Tx1 62835 63611 149 - . . scaffold40172 WUBlastX LINE_L1 68000 68140 39 - . . scaffold40172 WUBlastX LINE_L1-Tx1 68151 68669 160 - . . scaffold40172 TRF Tandem_Repeat 71710 72707 1595 + . . scaffold40172 GLEAN promoter 72846 73845 0.991732 + . ID=CGI_10003931; scaffold40172 GLEAN mRNA 73846 75643 0.991732 + . ID=CGI_10003931; scaffold40172 TRF Tandem_Repeat 75705 75738 59 + . . scaffold40172 TRF Tandem_Repeat 85039 85832 1281 + . . scaffold40172 TRF Tandem_Repeat 85846 85891 56 + . . scaffold40178 GLEAN mRNA 31150 50250 0.999219 - . ID=CGI_10003915; scaffold40178 GLEAN promoter 50251 51250 0.999219 - . ID=CGI_10003915; scaffold40178 GLEAN mRNA 83693 86442 1 - . ID=CGI_10003916; scaffold40178 GLEAN promoter 86443 86455 1 - . ID=CGI_10003916; scaffold40182 GLEAN mRNA 711 3312 0.529968 - . ID=CGI_10003935; scaffold40182 GLEAN promoter 3313 4312 0.529968 - . ID=CGI_10003935; scaffold40182 TRF Tandem_Repeat 3953 4000 96 + . . scaffold40182 TRF Tandem_Repeat 5392 5436 90 + . . scaffold40182 TRF Tandem_Repeat 5526 5565 80 + . . scaffold40182 GLEAN promoter 6136 7135 0.492081 + . ID=CGI_10003936; scaffold40182 GLEAN mRNA 7136 27863 0.492081 + . ID=CGI_10003936; scaffold40182 WUBlastX LINE_L2 17597 17698 20 + . . scaffold40182 WUBlastX LINE_L2 17636 17770 22 + . . scaffold40182 WUBlastX LINE_Jockey 17636 17698 26 + . . scaffold40182 WUBlastX LINE_RTE-BovB 18582 18830 36 + . . scaffold40182 WUBlastX LINE_L2 18675 18797 39 + . . scaffold40182 WUBlastX LINE_Jockey 18696 18818 41 + . . scaffold40182 WUBlastX LINE_RTE-X 18753 18830 57 + . . scaffold40182 WUBlastX LINE_I 18910 19005 41 + . . scaffold40182 WUBlastX LINE_RTE-X 18937 19143 29 + . . scaffold40182 WUBlastX LINE_CR1 19715 20029 38 + . . scaffold40182 WUBlastX LINE_RTE-X 19739 19942 49 + . . scaffold40182 WUBlastX LINE_RTE-X 19805 19942 67 + . . scaffold40182 GLEAN mRNA 21452 22030 0.999144 - . ID=CGI_10003937; scaffold40182 GLEAN promoter 22031 23030 0.999144 - . ID=CGI_10003937; scaffold40182 TRF Tandem_Repeat 23696 23731 63 + . . scaffold40182 GLEAN mRNA 26521 26949 0.999998 - . ID=CGI_10003938; scaffold40182 GLEAN promoter 26950 27949 0.999998 - . ID=CGI_10003938; scaffold40182 WUBlastX LTR_Gypsy 28408 28704 21 - . . scaffold40182 WUBlastX LTR_Gypsy 28459 28722 50 - . . scaffold40182 WUBlastX LTR_Gypsy 28492 28707 66 - . . scaffold40182 WUBlastX LTR_Gypsy 28722 29084 197 - . . scaffold40182 WUBlastX LTR_Gypsy 29076 30026 466 - . . scaffold40182 WUBlastX LTR_Gypsy 29100 30572 378 - . . scaffold40182 WUBlastX LTR_Gypsy 30584 30829 242 - . . scaffold40182 WUBlastX LTR_Gypsy 30853 31314 162 - . . scaffold40182 TRF Tandem_Repeat 33420 33533 90 + . . scaffold40182 TRF Tandem_Repeat 34449 34509 113 + . . scaffold40182 TRF Tandem_Repeat 35957 36006 91 + . . scaffold40182 TRF Tandem_Repeat 38608 38656 98 + . . scaffold40182 GLEAN mRNA 38997 39632 0.987955 - . ID=CGI_10003939; scaffold40182 GLEAN promoter 39633 40632 0.987955 - . ID=CGI_10003939; scaffold40182 GLEAN mRNA 42451 42696 0.988314 - . ID=CGI_10003940; scaffold40182 GLEAN promoter 42697 43696 0.988314 - . ID=CGI_10003940; scaffold40182 GLEAN promoter 44492 45491 0.999351 + . ID=CGI_10003941; scaffold40182 GLEAN mRNA 45492 56495 0.999351 + . ID=CGI_10003941; scaffold40182 TRF Tandem_Repeat 50937 51086 218 + . . scaffold40182 GLEAN mRNA 58476 61439 1 - . ID=CGI_10003942; scaffold40182 GLEAN promoter 61440 62439 1 - . ID=CGI_10003942; scaffold40182 WUBlastX LINE_CR1 64873 65253 57 + . . scaffold40182 WUBlastX LINE_CR1 65023 65298 79 + . . scaffold40182 WUBlastX LINE_CR1 65035 65355 34 + . . scaffold40182 GLEAN promoter 66490 67489 0.514221 + . ID=CGI_10003943; scaffold40182 GLEAN mRNA 67490 80514 0.514221 + . ID=CGI_10003943; scaffold40182 TRF Tandem_Repeat 68461 68514 108 + . . scaffold40182 TRF Tandem_Repeat 70389 70430 59 + . . scaffold40182 TRF Tandem_Repeat 71628 72628 1289 + . . scaffold40182 TRF Tandem_Repeat 80262 80366 74 + . . scaffold40182 TRF Tandem_Repeat 80307 80414 67 + . . scaffold40182 TRF Tandem_Repeat 85925 85982 63 + . . scaffold40182 TRF Tandem_Repeat 85925 85982 66 + . . scaffold40184 TRF Tandem_Repeat 14708 14764 72 + . . scaffold40184 TRF Tandem_Repeat 14709 14772 110 + . . scaffold40184 TRF Tandem_Repeat 28784 28914 126 + . . scaffold40184 WUBlastX LINE_RTE-X 36107 36487 48 - . . scaffold40184 WUBlastX LINE_RTE-X 36173 36487 51 - . . scaffold40184 WUBlastX LINE_RTE-X 36263 36571 52 - . . scaffold40184 WUBlastX LINE_RTE-X 36278 36505 93 - . . scaffold40184 WUBlastX LINE_RTE-X 36296 36487 100 - . . scaffold40184 TRF Tandem_Repeat 37717 37939 241 + . . scaffold40184 TRF Tandem_Repeat 37723 37899 218 + . . scaffold40184 GLEAN mRNA 39032 40267 0.59015 - . ID=CGI_10003944; scaffold40184 GLEAN promoter 40268 41267 0.59015 - . ID=CGI_10003944; scaffold40184 GLEAN promoter 43558 44557 0.811455 + . ID=CGI_10003945; scaffold40184 GLEAN mRNA 44558 57088 0.811455 + . ID=CGI_10003945; scaffold40184 GLEAN mRNA 59419 75300 0.999531 - . ID=CGI_10003946; scaffold40184 GLEAN promoter 64290 65289 0.728655 + . ID=CGI_10003947; scaffold40184 GLEAN mRNA 65290 67728 0.728655 + . ID=CGI_10003947; scaffold40184 GLEAN promoter 75301 76300 0.999531 - . ID=CGI_10003946; scaffold40184 GLEAN mRNA 75537 80014 0.99705 - . ID=CGI_10003948; scaffold40184 GLEAN promoter 80015 81014 0.99705 - . ID=CGI_10003948; scaffold40184 TRF Tandem_Repeat 83650 83685 54 + . . scaffold40186 GLEAN mRNA 1531 7867 0.535514 - . ID=CGI_10003925; scaffold40186 GLEAN promoter 7868 8867 0.535514 - . ID=CGI_10003925; scaffold40186 GLEAN mRNA 8653 12362 0.982913 - . ID=CGI_10003926; scaffold40186 GLEAN promoter 12363 13362 0.982913 - . ID=CGI_10003926; scaffold40186 WUBlastX LINE_RTE-X 13210 13602 29 - . . scaffold40186 WUBlastX LINE_RTE-X 13285 13602 69 - . . scaffold40186 WUBlastX LINE_RTE-X 13381 13599 79 - . . scaffold40186 TRF Tandem_Repeat 15225 15267 58 + . . scaffold40186 GLEAN mRNA 18331 26539 0.486093 - . ID=CGI_10003927; scaffold40186 WUBlastX LINE_RTE-BovB 22401 23225 56 + . . scaffold40186 WUBlastX DNA_TcMar-Tc1 24493 24948 240 - . . scaffold40186 WUBlastX DNA_TcMar-Tc1 24810 25448 59 - . . scaffold40186 WUBlastX DNA_TcMar-Tc1 24891 25229 122 - . . scaffold40186 GLEAN promoter 26540 27539 0.486093 - . ID=CGI_10003927; scaffold40186 WUBlastX DNA_Crypton 44203 44400 67 - . . scaffold40186 WUBlastX DNA_Crypton 44402 44542 36 - . . scaffold40186 GLEAN promoter 59784 60783 0.988625 + . ID=CGI_10003928; scaffold40186 TRF Tandem_Repeat 60209 60267 118 + . . scaffold40186 GLEAN mRNA 60784 72378 0.988625 + . ID=CGI_10003928; scaffold40186 TRF Tandem_Repeat 72000 72055 112 + . . scaffold40186 GLEAN promoter 75273 76272 0.999982 + . ID=CGI_10003929; scaffold40186 GLEAN mRNA 76273 76584 0.999982 + . ID=CGI_10003929; scaffold40186 WUBlastX LINE_L1-Tx1 83534 83962 53 + . . scaffold40186 WUBlastX LINE_L1-Tx1 83663 83962 136 + . . scaffold40186 WUBlastX LINE_L1-Tx1 83965 85155 237 + . . scaffold40186 TRF Tandem_Repeat 85184 85254 142 + . . scaffold40194 GLEAN promoter 1 679 0.999153 + . ID=CGI_10003949; scaffold40194 GLEAN mRNA 680 13427 0.999153 + . ID=CGI_10003949; scaffold40194 TRF Tandem_Repeat 6682 6812 146 + . . scaffold40194 TRF Tandem_Repeat 6682 6812 178 + . . scaffold40194 TRF Tandem_Repeat 7057 7091 70 + . . scaffold40194 TRF Tandem_Repeat 7999 8036 76 + . . scaffold40194 TRF Tandem_Repeat 8281 8395 167 + . . scaffold40194 TRF Tandem_Repeat 8281 8406 136 + . . scaffold40194 GLEAN mRNA 13029 27793 0.999351 - . ID=CGI_10003950; scaffold40194 TRF Tandem_Repeat 13195 13424 334 + . . scaffold40194 GLEAN promoter 27794 28793 0.999351 - . ID=CGI_10003950; scaffold40194 WUBlastX LINE_L2 29364 29693 107 - . . scaffold40194 WUBlastX LINE_CR1-L2 29364 29753 20 - . . scaffold40194 TRF Tandem_Repeat 31372 31419 96 + . . scaffold40194 TRF Tandem_Repeat 33613 34192 685 + . . scaffold40194 GLEAN promoter 45023 46022 0.828519 + . ID=CGI_10003951; scaffold40194 GLEAN mRNA 46023 47585 0.828519 + . ID=CGI_10003951; scaffold40194 TRF Tandem_Repeat 51895 52012 121 + . . scaffold40194 TRF Tandem_Repeat 52053 52169 110 + . . scaffold40194 TRF Tandem_Repeat 52254 52505 135 + . . scaffold40194 TRF Tandem_Repeat 52272 52431 126 + . . scaffold40194 WUBlastX LINE_Jockey 52721 52981 45 - . . scaffold40194 WUBlastX LINE_CR1 52766 53038 47 - . . scaffold40194 WUBlastX LINE_I-Nimb 52811 52987 68 - . . scaffold40194 WUBlastX LINE_Jockey 52850 52984 72 - . . scaffold40194 WUBlastX LINE_L2 52850 53176 63 - . . scaffold40194 TRF Tandem_Repeat 53333 53601 144 + . . scaffold40194 TRF Tandem_Repeat 53383 53601 212 + . . scaffold40194 TRF Tandem_Repeat 53719 54067 159 + . . scaffold40196 WUBlastX LINE_L1-Tx1 32 1327 434 + . . scaffold40196 WUBlastX DNA_TcMar-Marin 3561 3857 145 - . . scaffold40196 WUBlastX DNA_TcMar-Marin 3561 3938 131 - . . scaffold40196 WUBlastX DNA_TcMar-Marin 4161 4544 104 - . . scaffold40196 WUBlastX DNA_TcMar-Marin 4429 4764 76 - . . scaffold40196 WUBlastX DNA_TcMar-Marin 4441 4659 104 - . . scaffold40196 TRF Tandem_Repeat 12091 12141 102 + . . scaffold40196 TRF Tandem_Repeat 30565 30609 81 + . . scaffold40196 TRF Tandem_Repeat 33819 33860 84 + . . scaffold40196 TRF Tandem_Repeat 37739 37779 82 + . . scaffold40196 TRF Tandem_Repeat 43082 43120 60 + . . scaffold40196 TRF Tandem_Repeat 43260 44086 1094 + . . scaffold40196 TRF Tandem_Repeat 47767 47824 64 + . . scaffold40196 TRF Tandem_Repeat 54619 54643 50 + . . scaffold40196 WUBlastX DNA_IS4EU 58371 58592 38 - . . scaffold40196 WUBlastX DNA_Kolobok-IS4 58467 58601 51 - . . scaffold40196 WUBlastX LTR_Gypsy 58521 58997 76 + . . scaffold40196 WUBlastX LTR_Gypsy 58608 59168 52 + . . scaffold40196 WUBlastX LTR_Gypsy 58623 59078 110 + . . scaffold402 WUBlastX LTR_DIRS 388 1032 216 - . . scaffold402 WUBlastX LTR_Gypsy 6548 7417 286 - . . scaffold402 WUBlastX LTR_Gypsy-Cigr 6548 7285 434 - . . scaffold402 GLEAN promoter 13246 14245 0.81843 + . ID=CGI_10019317; scaffold402 GLEAN mRNA 14246 57134 0.81843 + . ID=CGI_10019317; scaffold402 TRF Tandem_Repeat 24810 24864 101 + . . scaffold402 TRF Tandem_Repeat 39945 40002 107 + . . scaffold402 TRF Tandem_Repeat 42484 42522 53 + . . scaffold402 GLEAN mRNA 60876 62897 0.739175 - . ID=CGI_10019318; scaffold402 GLEAN promoter 62898 63897 0.739175 - . ID=CGI_10019318; scaffold402 WUBlastX DNA_IS4EU 102555 102659 39 + . . scaffold402 WUBlastX DNA_IS4EU 103428 103619 61 + . . scaffold402 WUBlastX DNA_IS4EU 103473 103694 80 + . . scaffold402 WUBlastX DNA_Sola 105404 105442 25 - . . scaffold402 TRF Tandem_Repeat 105519 105557 62 + . . scaffold402 WUBlastX DNA_Sola 105570 105839 46 - . . scaffold402 GLEAN promoter 118560 119559 0.711167 + . ID=CGI_10019319; scaffold402 GLEAN mRNA 119560 119781 0.711167 + . ID=CGI_10019319; scaffold402 GLEAN promoter 128888 129887 0.94554 + . ID=CGI_10019320; scaffold402 GLEAN mRNA 129888 136507 0.94554 + . ID=CGI_10019320; scaffold402 WUBlastX LINE_RTE-X 141550 141687 27 + . . scaffold402 WUBlastX LINE_RTE-X 141678 141830 60 + . . scaffold402 WUBlastX LINE_RTE-X 141702 141830 67 + . . scaffold402 WUBlastX LINE_RTE-X 141839 142093 44 + . . scaffold402 WUBlastX LINE_RTE-X 141958 142632 50 + . . scaffold402 WUBlastX LINE_RTE-X 142090 142629 106 + . . scaffold402 TRF Tandem_Repeat 147199 147284 154 + . . scaffold402 GLEAN promoter 147985 148984 0.72327 + . ID=CGI_10019321; scaffold402 GLEAN mRNA 148985 183692 0.72327 + . ID=CGI_10019321; scaffold402 TRF Tandem_Repeat 167690 167729 80 + . . scaffold402 TRF Tandem_Repeat 168589 168642 76 + . . scaffold402 TRF Tandem_Repeat 168594 168639 76 + . . scaffold402 TRF Tandem_Repeat 181048 181094 94 + . . scaffold402 TRF Tandem_Repeat 182025 182061 65 + . . scaffold402 TRF Tandem_Repeat 184620 184705 91 + . . scaffold402 TRF Tandem_Repeat 184630 184705 143 + . . scaffold402 TRF Tandem_Repeat 193184 193235 104 + . . scaffold402 WUBlastX DNA_TcMar-Tc1 194920 195093 70 - . . scaffold402 WUBlastX DNA_TcMar-Marin 195056 195259 55 - . . scaffold402 TRF Tandem_Repeat 222444 222489 65 + . . scaffold402 TRF Tandem_Repeat 222557 222604 87 + . . scaffold402 GLEAN promoter 222655 223654 0.715837 + . ID=CGI_10019322; scaffold402 TRF Tandem_Repeat 222821 222857 74 + . . scaffold402 GLEAN mRNA 223655 229842 0.715837 + . ID=CGI_10019322; scaffold402 TRF Tandem_Repeat 225496 225558 73 + . . scaffold402 TRF Tandem_Repeat 225672 225697 52 + . . scaffold402 TRF Tandem_Repeat 225811 225879 120 + . . scaffold402 TRF Tandem_Repeat 230271 230550 452 + . . scaffold402 TRF Tandem_Repeat 234993 235601 736 + . . scaffold402 TRF Tandem_Repeat 242094 242132 78 + . . scaffold402 TRF Tandem_Repeat 243482 243901 642 + . . scaffold402 WUBlastX LINE_L2 246237 246788 215 - . . scaffold402 WUBlastX LINE_L2 246270 246974 146 - . . scaffold402 WUBlastX LINE_RTE-X 247928 248488 280 + . . scaffold402 WUBlastX LINE_RTE-X 248177 248545 106 + . . scaffold402 WUBlastX LINE_RTE-X 248243 248614 100 + . . scaffold402 TRF Tandem_Repeat 249374 249455 146 + . . scaffold402 TRF Tandem_Repeat 250623 250703 153 + . . scaffold402 GLEAN promoter 252479 253478 0.528485 + . ID=CGI_10019323; scaffold402 GLEAN mRNA 253479 253919 0.528485 + . ID=CGI_10019323; scaffold402 TRF Tandem_Repeat 254477 254526 61 + . . scaffold402 TRF Tandem_Repeat 265071 266212 1813 + . . scaffold402 WUBlastX LINE_L1-Tx1 266800 267084 46 + . . scaffold402 WUBlastX LINE_L1-Tx1 266914 267147 31 + . . scaffold402 TRF Tandem_Repeat 267420 267483 128 + . . scaffold402 WUBlastX DNA_TcMar-Tc2 269517 269942 88 - . . scaffold402 TRF Tandem_Repeat 275925 278280 3700 + . . scaffold402 TRF Tandem_Repeat 275925 278280 3696 + . . scaffold402 TRF Tandem_Repeat 275925 278280 3695 + . . scaffold402 WUBlastX DNA_hAT-Ac 278737 279012 98 - . . scaffold402 GLEAN promoter 281528 282527 0.995632 + . ID=CGI_10019324; scaffold402 GLEAN mRNA 282528 315522 0.995632 + . ID=CGI_10019324; scaffold402 TRF Tandem_Repeat 290848 290901 72 + . . scaffold402 TRF Tandem_Repeat 295546 295583 76 + . . scaffold402 TRF Tandem_Repeat 295581 295614 68 + . . scaffold402 TRF Tandem_Repeat 296130 296164 52 + . . scaffold402 TRF Tandem_Repeat 296877 297017 99 + . . scaffold402 TRF Tandem_Repeat 297806 297914 82 + . . scaffold402 TRF Tandem_Repeat 308506 308544 51 + . . scaffold402 TRF Tandem_Repeat 310288 310317 53 + . . scaffold402 GLEAN promoter 339165 340164 0.998395 + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 339542 339935 437 + . . scaffold402 TRF Tandem_Repeat 339556 339935 530 + . . scaffold402 GLEAN mRNA 340165 380935 0.998395 + . ID=CGI_10019325; scaffold402 TRF Tandem_Repeat 350218 350426 312 + . . scaffold402 TRF Tandem_Repeat 356788 356823 72 + . . scaffold402 TRF Tandem_Repeat 362752 363551 820 + . . scaffold402 TRF Tandem_Repeat 370898 372427 2262 + . . scaffold402 TRF Tandem_Repeat 370898 372427 2263 + . . scaffold402 TRF Tandem_Repeat 373035 374003 1749 + . . scaffold402 GLEAN mRNA 390614 397694 0.996653 - . ID=CGI_10019326; scaffold402 TRF Tandem_Repeat 391244 391348 103 + . . scaffold402 GLEAN promoter 397695 398694 0.996653 - . ID=CGI_10019326; scaffold402 GLEAN promoter 397794 398793 1 + . ID=CGI_10019327; scaffold402 GLEAN mRNA 398794 407344 1 + . ID=CGI_10019327; scaffold402 TRF Tandem_Repeat 405369 406209 975 + . . scaffold402 TRF Tandem_Repeat 414062 414153 85 + . . scaffold402 GLEAN promoter 414276 415275 1 + . ID=CGI_10019328; scaffold402 GLEAN mRNA 415276 434862 1 + . ID=CGI_10019328; scaffold402 TRF Tandem_Repeat 418635 418679 90 + . . scaffold402 TRF Tandem_Repeat 425110 425164 92 + . . scaffold402 TRF Tandem_Repeat 425175 426012 1105 + . . scaffold402 GLEAN promoter 435637 436636 0.996955 + . ID=CGI_10019329; scaffold402 GLEAN mRNA 436637 465660 0.996955 + . ID=CGI_10019329; scaffold402 TRF Tandem_Repeat 447841 449133 1794 + . . scaffold402 WUBlastX LINE_L1-Tx1 484384 484776 161 - . . scaffold402 WUBlastX LINE_Jockey 484435 484974 53 - . . scaffold402 TRF Tandem_Repeat 487393 487430 67 + . . scaffold402 TRF Tandem_Repeat 492141 492234 125 + . . scaffold402 TRF Tandem_Repeat 492281 492369 137 + . . scaffold402 GLEAN promoter 493543 494542 0.362796 + . ID=CGI_10019330; scaffold402 GLEAN mRNA 494543 500773 0.362796 + . ID=CGI_10019330; scaffold402 WUBlastX LINE_CR1-L2 503939 504544 87 + . . scaffold402 GLEAN promoter 505709 506708 0.362805 + . ID=CGI_10019331; scaffold402 GLEAN mRNA 506709 510050 0.362805 + . ID=CGI_10019331; scaffold402 GLEAN mRNA 510376 514059 1 - . ID=CGI_10019332; scaffold402 GLEAN promoter 513262 514261 0.999749 + . ID=CGI_10019333; scaffold402 GLEAN promoter 514060 515059 1 - . ID=CGI_10019332; scaffold402 GLEAN mRNA 514262 530560 0.999749 + . ID=CGI_10019333; scaffold402 WUBlastX LINE_L1 517177 517326 59 + . . scaffold402 WUBlastX LINE_L1 517219 517314 65 + . . scaffold402 WUBlastX LINE_L1 517328 517423 24 + . . scaffold402 WUBlastX LINE_L1-Tx1 517439 517660 40 + . . scaffold402 WUBlastX LINE_L1-Tx1 517505 517657 45 + . . scaffold402 WUBlastX LINE_L1 517629 517817 66 + . . scaffold402 WUBlastX LINE_L1 517662 517847 77 + . . scaffold402 WUBlastX LINE_L1 517674 517880 26 + . . scaffold402 WUBlastX LINE_L1-Tx1 523747 524109 82 - . . scaffold402 WUBlastX LINE_L1-Tx1 523747 524049 113 - . . scaffold402 GLEAN mRNA 556505 570658 0.997192 - . ID=CGI_10019334; scaffold402 TRF Tandem_Repeat 556689 557356 322 + . . scaffold402 TRF Tandem_Repeat 556689 557356 773 + . . scaffold402 TRF Tandem_Repeat 556753 557356 645 + . . scaffold402 TRF Tandem_Repeat 557142 557356 326 + . . scaffold402 TRF Tandem_Repeat 561801 562057 245 + . . scaffold402 TRF Tandem_Repeat 562404 563167 846 + . . scaffold402 GLEAN promoter 570659 571658 0.997192 - . ID=CGI_10019334; scaffold402 TRF Tandem_Repeat 573369 574615 1444 + . . scaffold402 GLEAN promoter 574597 575596 0.989249 + . ID=CGI_10019335; scaffold402 GLEAN mRNA 575597 586332 0.989249 + . ID=CGI_10019335; scaffold402 GLEAN mRNA 590166 594957 1 - . ID=CGI_10019336; scaffold402 GLEAN promoter 594958 595555 1 - . ID=CGI_10019336; scaffold40208 GLEAN promoter 22698 23697 0.796759 + . ID=CGI_10003952; scaffold40208 GLEAN mRNA 23698 25854 0.796759 + . ID=CGI_10003952; scaffold40208 TRF Tandem_Repeat 26169 26217 98 + . . scaffold40208 TRF Tandem_Repeat 26981 27029 98 + . . scaffold40208 GLEAN mRNA 27344 29500 0.920448 - . ID=CGI_10003953; scaffold40208 GLEAN promoter 29501 30500 0.920448 - . ID=CGI_10003953; scaffold40208 GLEAN promoter 29839 30838 0.999064 + . ID=CGI_10003954; scaffold40208 GLEAN mRNA 30839 69631 0.999064 + . ID=CGI_10003954; scaffold40208 WUBlastX RC_Helitron 32816 33775 573 + . . scaffold40208 WUBlastX RC_Helitron 33775 35592 1020 + . . scaffold40208 WUBlastX RC_Helitron 34978 35715 275 + . . scaffold40208 WUBlastX RC_Helitron 35512 35775 35 + . . scaffold40208 TRF Tandem_Repeat 35986 36675 1240 + . . scaffold40208 TRF Tandem_Repeat 36680 36713 50 + . . scaffold40208 TRF Tandem_Repeat 36683 36726 70 + . . scaffold40208 WUBlastX RC_Helitron 36776 37969 814 + . . scaffold40208 WUBlastX RC_Helitron 37962 38708 156 + . . scaffold40208 TRF Tandem_Repeat 42533 42846 154 + . . scaffold40208 TRF Tandem_Repeat 47722 47760 78 + . . scaffold40208 TRF Tandem_Repeat 56581 56634 101 + . . scaffold40208 TRF Tandem_Repeat 60456 60484 58 + . . scaffold40208 TRF Tandem_Repeat 61227 61331 111 + . . scaffold40208 GLEAN mRNA 71283 71513 0.776794 - . ID=CGI_10003955; scaffold40208 GLEAN promoter 71514 72513 0.776794 - . ID=CGI_10003955; scaffold40208 GLEAN promoter 71712 72711 0.842413 + . ID=CGI_10003956; scaffold40208 GLEAN mRNA 72712 87059 0.842413 + . ID=CGI_10003956; scaffold40208 TRF Tandem_Repeat 78330 78371 84 + . . scaffold40208 WUBlastX LINE_RTE-X 82918 83280 46 + . . scaffold40208 WUBlastX LINE_L1-Tx1 83545 83847 36 + . . scaffold40208 WUBlastX LINE_RTE-X 84495 84935 151 + . . scaffold40208 WUBlastX LINE_RTE-X 84498 85040 99 + . . scaffold40208 WUBlastX LINE_RTE-X 85102 85359 114 + . . scaffold40216 GLEAN promoter 1 25 1 + . ID=CGI_10003964; scaffold40216 GLEAN mRNA 26 3031 1 + . ID=CGI_10003964; scaffold40216 WUBlastX DNA_Crypton 17568 18077 47 - . . scaffold40216 WUBlastX LTR_Gypsy 20873 21187 32 - . . scaffold40216 GLEAN mRNA 20957 23593 0.998157 - . ID=CGI_10003965; scaffold40216 WUBlastX LTR_Gypsy 20987 21220 58 - . . scaffold40216 GLEAN promoter 23594 24593 0.998157 - . ID=CGI_10003965; scaffold40216 TRF Tandem_Repeat 25691 26543 1133 + . . scaffold40216 TRF Tandem_Repeat 27016 27292 362 + . . scaffold40216 WUBlastX DNA_Academ 30885 31235 156 + . . scaffold40216 WUBlastX DNA_Academ 31238 31915 56 + . . scaffold40216 WUBlastX DNA_Academ 32108 32401 63 + . . scaffold40216 WUBlastX DNA_Academ 32261 33013 35 + . . scaffold40216 WUBlastX DNA_Academ 33057 33155 20 + . . scaffold40216 WUBlastX DNA_Academ 33078 33173 27 + . . scaffold40216 WUBlastX LINE_L2 33963 34229 32 + . . scaffold40216 TRF Tandem_Repeat 37918 37979 124 + . . scaffold40216 TRF Tandem_Repeat 44044 44157 88 + . . scaffold40216 TRF Tandem_Repeat 44774 44875 96 + . . scaffold40216 TRF Tandem_Repeat 44866 45015 178 + . . scaffold40216 TRF Tandem_Repeat 82967 83755 653 + . . scaffold40224 GLEAN mRNA 8998 10404 0.82852 - . ID=CGI_10003932; scaffold40224 GLEAN promoter 10405 11404 0.82852 - . ID=CGI_10003932; scaffold40224 TRF Tandem_Repeat 15761 15809 98 + . . scaffold40224 TRF Tandem_Repeat 24254 24309 112 + . . scaffold40224 TRF Tandem_Repeat 34462 34546 61 + . . scaffold40224 TRF Tandem_Repeat 42299 42328 60 + . . scaffold40224 GLEAN mRNA 42827 63461 0.986337 - . ID=CGI_10003933; scaffold40224 TRF Tandem_Repeat 50939 50986 96 + . . scaffold40224 TRF Tandem_Repeat 53009 53458 497 + . . scaffold40224 GLEAN promoter 63462 64461 0.986337 - . ID=CGI_10003933; scaffold40224 TRF Tandem_Repeat 66376 68363 564 + . . scaffold40224 TRF Tandem_Repeat 66390 67885 356 + . . scaffold40224 TRF Tandem_Repeat 66542 66796 222 + . . scaffold40224 TRF Tandem_Repeat 66588 68288 711 + . . scaffold40224 TRF Tandem_Repeat 66684 68188 814 + . . scaffold40224 TRF Tandem_Repeat 66684 67371 443 + . . scaffold40224 TRF Tandem_Repeat 66708 67853 635 + . . scaffold40224 TRF Tandem_Repeat 66986 68280 612 + . . scaffold40224 TRF Tandem_Repeat 67853 68152 186 + . . scaffold40224 TRF Tandem_Repeat 68121 68280 175 + . . scaffold40224 TRF Tandem_Repeat 70007 70036 60 + . . scaffold40224 TRF Tandem_Repeat 70011 70079 66 + . . scaffold40224 TRF Tandem_Repeat 70038 70083 74 + . . scaffold40224 TRF Tandem_Repeat 70093 70129 56 + . . scaffold40224 TRF Tandem_Repeat 70134 70185 68 + . . scaffold40224 TRF Tandem_Repeat 70610 70645 72 + . . scaffold40224 GLEAN promoter 79124 80123 1 + . ID=CGI_10003934; scaffold40224 GLEAN mRNA 80124 80803 1 + . ID=CGI_10003934; scaffold40224 WUBlastX LTR_Gypsy 84525 85067 156 + . . scaffold40224 WUBlastX LTR_Gypsy 84531 85187 74 + . . scaffold40224 WUBlastX LTR_Gypsy 85406 85771 36 + . . scaffold40224 WUBlastX LTR_Gypsy 85469 85777 41 + . . scaffold40224 WUBlastX LTR_Gypsy 85583 86755 458 + . . scaffold40226 GLEAN mRNA 3189 10329 0.801183 - . ID=CGI_10003961; scaffold40226 GLEAN promoter 9564 10563 0.681801 + . ID=CGI_10003962; scaffold40226 GLEAN promoter 10330 11329 0.801183 - . ID=CGI_10003961; scaffold40226 GLEAN mRNA 10564 17358 0.681801 + . ID=CGI_10003962; scaffold40226 GLEAN promoter 33377 34376 0.999625 + . ID=CGI_10003963; scaffold40226 GLEAN mRNA 34377 45803 0.999625 + . ID=CGI_10003963; scaffold40230 GLEAN mRNA 11033 13209 0.998817 - . ID=CGI_10003958; scaffold40230 GLEAN promoter 13210 14209 0.998817 - . ID=CGI_10003958; scaffold40230 GLEAN promoter 14231 15230 0.998984 + . ID=CGI_10003959; scaffold40230 GLEAN mRNA 15231 44144 0.998984 + . ID=CGI_10003959; scaffold40230 GLEAN mRNA 50016 81778 0.835903 - . ID=CGI_10003960; scaffold40230 GLEAN promoter 81779 82778 0.835903 - . ID=CGI_10003960; scaffold40234 GLEAN promoter 1 195 0.796204 + . ID=CGI_10003966; scaffold40234 GLEAN mRNA 196 18543 0.796204 + . ID=CGI_10003966; scaffold40234 TRF Tandem_Repeat 2023 3059 1230 + . . scaffold40234 TRF Tandem_Repeat 6558 6598 82 + . . scaffold40234 TRF Tandem_Repeat 11727 11758 64 + . . scaffold40234 TRF Tandem_Repeat 12130 12169 80 + . . scaffold40234 TRF Tandem_Repeat 23606 23646 82 + . . scaffold40234 GLEAN promoter 24873 25872 0.997837 + . ID=CGI_10003967; scaffold40234 GLEAN mRNA 25873 30947 0.997837 + . ID=CGI_10003967; scaffold40234 TRF Tandem_Repeat 28252 28794 743 + . . scaffold40234 TRF Tandem_Repeat 30625 30677 106 + . . scaffold40234 GLEAN promoter 30713 31712 1 + . ID=CGI_10003968; scaffold40234 GLEAN mRNA 31713 40719 1 + . ID=CGI_10003968; scaffold40234 GLEAN mRNA 39092 46595 0.999351 - . ID=CGI_10003969; scaffold40234 TRF Tandem_Repeat 44665 44920 246 + . . scaffold40234 GLEAN promoter 46596 47595 0.999351 - . ID=CGI_10003969; scaffold40234 GLEAN promoter 50185 51184 1 + . ID=CGI_10003970; scaffold40234 GLEAN mRNA 51185 56536 1 + . ID=CGI_10003970; scaffold40234 GLEAN mRNA 51363 70450 0.786854 - . ID=CGI_10003971; scaffold40234 TRF Tandem_Repeat 54908 54942 70 + . . scaffold40234 TRF Tandem_Repeat 64342 64391 100 + . . scaffold40234 TRF Tandem_Repeat 65479 65531 106 + . . scaffold40234 GLEAN promoter 70451 71450 0.786854 - . ID=CGI_10003971; scaffold40234 GLEAN promoter 72498 73497 1 + . ID=CGI_10003972; scaffold40234 GLEAN mRNA 73498 81043 1 + . ID=CGI_10003972; scaffold40234 TRF Tandem_Repeat 74283 74352 61 + . . scaffold40234 TRF Tandem_Repeat 74295 74433 107 + . . scaffold40234 TRF Tandem_Repeat 74304 74424 79 + . . scaffold40234 GLEAN mRNA 80885 81514 0.802137 - . ID=CGI_10003973; scaffold40234 GLEAN promoter 81515 82514 0.802137 - . ID=CGI_10003973; scaffold40234 GLEAN mRNA 81530 81943 0.999995 - . ID=CGI_10003974; scaffold40234 GLEAN promoter 81944 82943 0.999995 - . ID=CGI_10003974; scaffold40234 WUBlastX LINE_RTE-X 84542 84892 230 + . . scaffold40246 TRF Tandem_Repeat 707 746 52 + . . scaffold40246 WUBlastX DNA_TcMar-Tc2 3878 4207 49 - . . scaffold40246 WUBlastX DNA_TcMar-Tc2 4037 4186 87 - . . scaffold40246 WUBlastX DNA_TcMar-Tc2 4197 4400 124 - . . scaffold40246 WUBlastX DNA_TcMar-Tc2 5358 5627 134 - . . scaffold40246 WUBlastX DNA_TcMar-Tc2 5466 5627 151 - . . scaffold40246 WUBlastX DNA_TcMar-Tc2 5614 5745 52 - . . scaffold40246 WUBlastX DNA_PiggyBac 8218 8325 40 - . . scaffold40246 WUBlastX DNA_PiggyBac 8276 8785 121 - . . scaffold40246 WUBlastX DNA_PiggyBac 8785 8892 30 - . . scaffold40246 GLEAN mRNA 10822 13843 0.614733 - . ID=CGI_10003985; scaffold40246 TRF Tandem_Repeat 12660 12750 78 + . . scaffold40246 GLEAN promoter 13844 14843 0.614733 - . ID=CGI_10003985; scaffold40246 WUBlastX DNA_En-Spm 17536 17958 105 + . . scaffold40246 WUBlastX DNA_PiggyBac 23901 24110 71 - . . scaffold40246 WUBlastX DNA_PiggyBac 24070 24684 315 - . . scaffold40246 WUBlastX DNA_PiggyBac 24094 24849 163 - . . scaffold40246 WUBlastX DNA_TcMar-Tc2 25473 25769 77 - . . scaffold40246 WUBlastX DNA_hAT-Tip100 25875 25946 27 - . . scaffold40246 GLEAN mRNA 25998 27045 0.997233 - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 26019 26282 93 - . . scaffold40246 WUBlastX DNA_hAT-Tip100 26073 26390 87 - . . scaffold40246 WUBlastX DNA_hAT-Tip100 26506 26838 32 - . . scaffold40246 WUBlastX DNA_hAT-Tip100 26956 27165 81 - . . scaffold40246 GLEAN promoter 27046 28045 0.997233 - . ID=CGI_10003986; scaffold40246 WUBlastX DNA_hAT-Tip100 27091 27330 38 - . . scaffold40246 TRF Tandem_Repeat 27382 27412 53 + . . scaffold40246 TRF Tandem_Repeat 34726 34830 165 + . . scaffold40246 TRF Tandem_Repeat 34751 34813 50 + . . scaffold40246 GLEAN promoter 35579 36578 0.999273 + . ID=CGI_10003987; scaffold40246 GLEAN mRNA 36579 47619 0.999273 + . ID=CGI_10003987; scaffold40246 TRF Tandem_Repeat 41763 41873 168 + . . scaffold40246 GLEAN promoter 47363 48362 0.811719 + . ID=CGI_10003988; scaffold40246 GLEAN mRNA 48363 49687 0.811719 + . ID=CGI_10003988; scaffold40246 GLEAN mRNA 56673 71830 0.999351 - . ID=CGI_10003989; scaffold40246 TRF Tandem_Repeat 58426 59707 1741 + . . scaffold40246 TRF Tandem_Repeat 60651 60762 165 + . . scaffold40246 TRF Tandem_Repeat 63541 63668 229 + . . scaffold40246 GLEAN promoter 65730 66729 0.738332 + . ID=CGI_10003990; scaffold40246 GLEAN mRNA 66730 70860 0.738332 + . ID=CGI_10003990; scaffold40246 TRF Tandem_Repeat 70621 70654 68 + . . scaffold40246 GLEAN promoter 71831 72830 0.999351 - . ID=CGI_10003989; scaffold40246 GLEAN mRNA 74066 75642 0.412705 - . ID=CGI_10003991; scaffold40246 TRF Tandem_Repeat 74731 74765 56 + . . scaffold40246 GLEAN promoter 75643 76642 0.412705 - . ID=CGI_10003991; scaffold40246 GLEAN promoter 76805 77804 0.999997 + . ID=CGI_10003992; scaffold40246 TRF Tandem_Repeat 77699 77739 82 + . . scaffold40246 GLEAN mRNA 77805 79031 0.999997 + . ID=CGI_10003992; scaffold40246 TRF Tandem_Repeat 86725 86907 91 + . . scaffold40254 GLEAN mRNA 557 10640 0.999221 - . ID=CGI_10004003; scaffold40254 TRF Tandem_Repeat 2210 2235 52 + . . scaffold40254 GLEAN promoter 10641 11640 0.999221 - . ID=CGI_10004003; scaffold40254 GLEAN mRNA 11036 14691 0.999957 - . ID=CGI_10004004; scaffold40254 TRF Tandem_Repeat 11496 11552 114 + . . scaffold40254 TRF Tandem_Repeat 12885 13619 1093 + . . scaffold40254 GLEAN promoter 14692 15691 0.999957 - . ID=CGI_10004004; scaffold40254 TRF Tandem_Repeat 17922 18037 88 + . . scaffold40254 TRF Tandem_Repeat 18755 18808 99 + . . scaffold40254 GLEAN mRNA 19258 31039 0.999906 - . ID=CGI_10004005; scaffold40254 TRF Tandem_Repeat 20678 20721 88 + . . scaffold40254 TRF Tandem_Repeat 21588 21631 88 + . . scaffold40254 GLEAN promoter 30193 31192 1 + . ID=CGI_10004006; scaffold40254 GLEAN promoter 31040 32039 0.999906 - . ID=CGI_10004005; scaffold40254 GLEAN mRNA 31193 43032 1 + . ID=CGI_10004006; scaffold40254 WUBlastX LINE_RTE-X 49473 49910 53 - . . scaffold40254 WUBlastX LINE_RTE-X 49596 49907 72 - . . scaffold40254 GLEAN promoter 51366 52365 0.145016 + . ID=CGI_10004007; scaffold40254 GLEAN mRNA 52366 75477 0.145016 + . ID=CGI_10004007; scaffold40254 TRF Tandem_Repeat 53205 53248 79 + . . scaffold40254 TRF Tandem_Repeat 55120 55429 156 + . . scaffold40254 TRF Tandem_Repeat 55120 55440 143 + . . scaffold40254 TRF Tandem_Repeat 55121 55412 265 + . . scaffold40254 GLEAN promoter 74961 75960 0.998575 + . ID=CGI_10004008; scaffold40254 GLEAN mRNA 75961 88314 0.998575 + . ID=CGI_10004008; scaffold40264 TRF Tandem_Repeat 333 380 53 + . . scaffold40264 TRF Tandem_Repeat 333 377 72 + . . scaffold40264 TRF Tandem_Repeat 4786 4864 158 + . . scaffold40264 TRF Tandem_Repeat 8227 8414 315 + . . scaffold40264 GLEAN promoter 9435 10434 0.512371 + . ID=CGI_10004012; scaffold40264 GLEAN mRNA 10435 67637 0.512371 + . ID=CGI_10004012; scaffold40264 TRF Tandem_Repeat 13632 13699 91 + . . scaffold40264 TRF Tandem_Repeat 19175 19221 76 + . . scaffold40264 TRF Tandem_Repeat 38455 40999 3779 + . . scaffold40264 WUBlastX LINE_L1 49437 49472 20 - . . scaffold40264 WUBlastX LINE_CR1 49499 51058 201 - . . scaffold40264 WUBlastX LINE_L2 49718 51625 176 - . . scaffold40264 WUBlastX LINE_RTE-X 49754 51316 413 - . . scaffold40264 WUBlastX LINE_Proto2 51354 52400 157 - . . scaffold40264 WUBlastX LINE_Proto2 51777 52571 29 - . . scaffold40264 GLEAN mRNA 59203 61926 0.999375 - . ID=CGI_10004013; scaffold40264 GLEAN promoter 61927 62926 0.999375 - . ID=CGI_10004013; scaffold40264 GLEAN promoter 68306 69305 0.999545 + . ID=CGI_10004014; scaffold40264 GLEAN mRNA 69306 74511 0.999545 + . ID=CGI_10004014; scaffold40264 TRF Tandem_Repeat 70895 70939 90 + . . scaffold40264 TRF Tandem_Repeat 71241 71479 253 + . . scaffold40264 GLEAN mRNA 75650 79441 1 - . ID=CGI_10004015; scaffold40264 GLEAN promoter 79442 80441 1 - . ID=CGI_10004015; scaffold40264 GLEAN mRNA 85763 86654 0.858073 - . ID=CGI_10004016; scaffold40264 GLEAN promoter 86655 87654 0.858073 - . ID=CGI_10004016; scaffold40264 GLEAN mRNA 86990 87870 0.858071 - . ID=CGI_10004017; scaffold40264 GLEAN promoter 87871 88722 0.858071 - . ID=CGI_10004017; scaffold40270 WUBlastX LTR_Ngaro 3961 4329 178 - . . scaffold40270 WUBlastX LINE_L1-Tx1 4698 5111 74 - . . scaffold40270 WUBlastX LINE_L1 4899 5294 91 - . . scaffold40270 WUBlastX LINE_L1-Tx1 4899 5075 94 - . . scaffold40270 WUBlastX LINE_L1-Tx1 5303 5797 71 - . . scaffold40270 WUBlastX LTR_Ngaro 5828 6238 150 - . . scaffold40270 WUBlastX LTR_Ngaro 5855 6382 128 - . . scaffold40270 WUBlastX LTR_Ngaro 6369 6656 137 - . . scaffold40270 WUBlastX LTR_Ngaro 6656 7042 193 - . . scaffold40270 WUBlastX LTR_Ngaro 7036 7317 116 - . . scaffold40270 TRF Tandem_Repeat 19981 20057 57 + . . scaffold40270 GLEAN mRNA 32505 42527 0.234076 - . ID=CGI_10003993; scaffold40270 TRF Tandem_Repeat 41552 41599 55 + . . scaffold40270 GLEAN promoter 42528 43527 0.234076 - . ID=CGI_10003993; scaffold40270 GLEAN mRNA 43750 74719 0.988746 - . ID=CGI_10003994; scaffold40270 TRF Tandem_Repeat 56778 56804 54 + . . scaffold40270 TRF Tandem_Repeat 70026 70336 132 + . . scaffold40270 TRF Tandem_Repeat 70026 70336 132 + . . scaffold40270 GLEAN promoter 74720 75719 0.988746 - . ID=CGI_10003994; scaffold40270 GLEAN mRNA 77014 85198 0.811719 - . ID=CGI_10003995; scaffold40270 GLEAN promoter 85199 86198 0.811719 - . ID=CGI_10003995; scaffold40282 WUBlastX LINE_L1 3193 3918 52 + . . scaffold40282 WUBlastX LINE_L1-Tx1 3325 4173 175 + . . scaffold40282 WUBlastX LINE_L1 3409 4080 278 + . . scaffold40282 GLEAN mRNA 4444 11193 0.968916 - . ID=CGI_10003999; scaffold40282 GLEAN promoter 11194 12193 0.968916 - . ID=CGI_10003999; scaffold40282 GLEAN promoter 13882 14881 0.921785 + . ID=CGI_10004000; scaffold40282 GLEAN mRNA 14882 20287 0.921785 + . ID=CGI_10004000; scaffold40282 GLEAN promoter 25181 26180 1 + . ID=CGI_10004001; scaffold40282 GLEAN mRNA 26181 34807 1 + . ID=CGI_10004001; scaffold40282 WUBlastX LTR_Gypsy 30547 30954 115 + . . scaffold40282 WUBlastX LTR_Gypsy 30930 30983 39 + . . scaffold40282 TRF Tandem_Repeat 31876 31902 54 + . . scaffold40282 WUBlastX LTR_Gypsy 31939 32229 84 + . . scaffold40282 TRF Tandem_Repeat 48624 48668 65 + . . scaffold40282 GLEAN promoter 55091 56090 0.539379 + . ID=CGI_10004002; scaffold40282 GLEAN mRNA 56091 83549 0.539379 + . ID=CGI_10004002; scaffold40282 TRF Tandem_Repeat 59396 59462 116 + . . scaffold40282 WUBlastX LTR_Gypsy 73114 73437 186 - . . scaffold40282 WUBlastX LTR_Gypsy 73192 73506 163 - . . scaffold40282 WUBlastX LTR_Gypsy 73216 73563 108 - . . scaffold40282 WUBlastX LTR_Gypsy 73847 74188 100 - . . scaffold40282 WUBlastX LTR_Gypsy 73961 74791 222 - . . scaffold40282 WUBlastX LTR_Gypsy 74180 74785 240 - . . scaffold40282 WUBlastX LTR_Gypsy 74222 75085 233 - . . scaffold40282 WUBlastX LTR_Gypsy 75081 75707 447 - . . scaffold40282 WUBlastX LTR_Gypsy 75595 76158 154 - . . scaffold40282 WUBlastX LTR_Gypsy-Gmr1 75712 76014 248 - . . scaffold40282 WUBlastX LTR_Gypsy 75953 76456 27 - . . scaffold40282 WUBlastX LTR_Gypsy 76007 76216 46 - . . scaffold40282 WUBlastX LTR_Gypsy 76310 77272 135 - . . scaffold40282 WUBlastX LTR_Gypsy 77290 77616 70 - . . scaffold40282 WUBlastX LTR_Gypsy 77290 77700 44 - . . scaffold40290 GLEAN promoter 168 1167 1 + . ID=CGI_10004018; scaffold40290 GLEAN mRNA 1168 10080 1 + . ID=CGI_10004018; scaffold40290 WUBlastX LINE_RTE-X 7655 8518 202 - . . scaffold40290 WUBlastX LINE_RTE-X 8485 8538 28 - . . scaffold40290 GLEAN mRNA 10647 11021 0.901374 - . ID=CGI_10004019; scaffold40290 GLEAN promoter 11022 12021 0.901374 - . ID=CGI_10004019; scaffold40290 TRF Tandem_Repeat 12756 12807 104 + . . scaffold40290 TRF Tandem_Repeat 37303 38425 590 + . . scaffold40290 TRF Tandem_Repeat 37406 37630 229 + . . scaffold40290 TRF Tandem_Repeat 37751 37833 56 + . . scaffold40290 TRF Tandem_Repeat 37976 38411 408 + . . scaffold40290 TRF Tandem_Repeat 39578 39929 471 + . . scaffold40290 TRF Tandem_Repeat 39578 39929 436 + . . scaffold40290 TRF Tandem_Repeat 40275 40460 214 + . . scaffold40290 GLEAN promoter 49627 50626 0.999674 + . ID=CGI_10004020; scaffold40290 GLEAN mRNA 50627 53390 0.999674 + . ID=CGI_10004020; scaffold40290 GLEAN mRNA 54193 55308 0.999661 - . ID=CGI_10004021; scaffold40290 GLEAN promoter 55309 56308 0.999661 - . ID=CGI_10004021; scaffold40290 GLEAN promoter 56330 57329 1 + . ID=CGI_10004022; scaffold40290 GLEAN mRNA 57330 59259 1 + . ID=CGI_10004022; scaffold40290 GLEAN mRNA 61770 65897 0.654733 - . ID=CGI_10004023; scaffold40290 GLEAN promoter 65898 66897 0.654733 - . ID=CGI_10004023; scaffold40290 TRF Tandem_Repeat 67301 67361 70 + . . scaffold40290 TRF Tandem_Repeat 67559 67681 89 + . . scaffold40290 TRF Tandem_Repeat 67575 67697 176 + . . scaffold40290 TRF Tandem_Repeat 69530 69572 86 + . . scaffold40290 TRF Tandem_Repeat 69994 70115 136 + . . scaffold40290 TRF Tandem_Repeat 70020 70153 95 + . . scaffold40290 WUBlastX LINE_RTE-X 71041 71226 48 - . . scaffold40290 WUBlastX LINE_RTE-X 71238 71480 71 - . . scaffold40290 WUBlastX LINE_RTE-X 71504 72055 110 - . . scaffold40290 WUBlastX LINE_RTE-X 71588 72097 194 - . . scaffold40290 WUBlastX LINE_RTE-X 71591 72202 148 - . . scaffold40290 TRF Tandem_Repeat 73703 73791 169 + . . scaffold40290 TRF Tandem_Repeat 85496 85540 81 + . . scaffold403 GLEAN promoter 295 1294 1 + . ID=CGI_10003083; scaffold403 GLEAN mRNA 1295 6478 1 + . ID=CGI_10003083; scaffold403 GLEAN promoter 10387 11386 0.432817 + . ID=CGI_10003085; scaffold403 GLEAN mRNA 11387 17310 0.432817 + . ID=CGI_10003085; scaffold403 GLEAN mRNA 33514 44059 0.651067 - . ID=CGI_10003086; scaffold403 GLEAN promoter 44060 45059 0.651067 - . ID=CGI_10003086; scaffold403 GLEAN promoter 44333 45332 0.499918 + . ID=CGI_10003087; scaffold403 GLEAN mRNA 45333 54611 0.499918 + . ID=CGI_10003087; scaffold403 GLEAN mRNA 51902 53107 0.593391 - . ID=CGI_10003088; scaffold403 GLEAN promoter 53108 54107 0.593391 - . ID=CGI_10003088; scaffold40342 WUBlastX LINE_L2 632 790 47 + . . scaffold40342 WUBlastX LINE_L2 650 784 66 + . . scaffold40342 WUBlastX LINE_L2 798 1265 111 + . . scaffold40342 TRF Tandem_Repeat 39183 39211 58 + . . scaffold40342 TRF Tandem_Repeat 50233 50280 96 + . . scaffold40346 GLEAN mRNA 9641 11052 1 - . ID=CGI_10004039; scaffold40346 GLEAN promoter 11053 12052 1 - . ID=CGI_10004039; scaffold40346 GLEAN promoter 12259 13258 0.499966 + . ID=CGI_10004040; scaffold40346 GLEAN mRNA 13259 17162 0.499966 + . ID=CGI_10004040; scaffold40346 TRF Tandem_Repeat 21452 21482 53 + . . scaffold40346 GLEAN mRNA 23217 29434 0.99961 - . ID=CGI_10004041; scaffold40346 WUBlastX DNA_TcMar-Tc1 23940 24869 258 - . . scaffold40346 WUBlastX DNA_TcMar-Tc1 24273 25001 114 - . . scaffold40346 WUBlastX LINE_L1-Tx1 25241 25453 40 + . . scaffold40346 TRF Tandem_Repeat 28083 28115 57 + . . scaffold40346 TRF Tandem_Repeat 28648 28709 70 + . . scaffold40346 GLEAN promoter 29435 30434 0.99961 - . ID=CGI_10004041; scaffold40346 GLEAN mRNA 49382 54311 0.51444 - . ID=CGI_10004042; scaffold40346 GLEAN promoter 54312 55311 0.51444 - . ID=CGI_10004042; scaffold40346 TRF Tandem_Repeat 54879 55664 989 + . . scaffold40346 TRF Tandem_Repeat 55822 56830 1338 + . . scaffold40346 TRF Tandem_Repeat 57734 59931 2961 + . . scaffold40346 TRF Tandem_Repeat 57734 59931 2989 + . . scaffold40346 TRF Tandem_Repeat 80623 80723 87 + . . scaffold40346 TRF Tandem_Repeat 80718 80810 87 + . . scaffold40346 TRF Tandem_Repeat 81524 81655 81 + . . scaffold40346 WUBlastX DNA_Maverick 82001 82201 32 + . . scaffold40346 WUBlastX DNA_Maverick 82028 82261 25 + . . scaffold40346 WUBlastX DNA_Maverick 82043 82309 23 + . . scaffold40366 GLEAN promoter 1610 2609 1 + . ID=CGI_10004055; scaffold40366 GLEAN mRNA 2610 3106 1 + . ID=CGI_10004055; scaffold40366 GLEAN mRNA 5140 9161 0.998976 - . ID=CGI_10004056; scaffold40366 GLEAN promoter 9162 10161 0.998976 - . ID=CGI_10004056; scaffold40366 WUBlastX DNA_En-Spm 20895 21260 90 + . . scaffold40366 WUBlastX DNA_En-Spm 20962 22257 544 + . . scaffold40366 WUBlastX DNA_En-Spm 21262 22257 732 + . . scaffold40366 TRF Tandem_Repeat 42929 43014 68 + . . scaffold40366 WUBlastX LTR_Gypsy 49470 49868 25 + . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 49632 49835 43 + . . scaffold40366 WUBlastX LTR_Gypsy 49692 49790 47 + . . scaffold40366 WUBlastX LTR_Gypsy 49713 49817 49 + . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 49825 50025 57 + . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 49828 50169 36 + . . scaffold40366 WUBlastX LTR_Gypsy 50195 50641 83 + . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 50426 50686 44 + . . scaffold40366 WUBlastX LTR_Gypsy 51274 51414 58 + . . scaffold40366 WUBlastX LTR_Gypsy 51307 51438 29 + . . scaffold40366 WUBlastX LTR_Pao 77313 77408 58 - . . scaffold40366 WUBlastX LTR_Pao 77374 77649 129 - . . scaffold40366 WUBlastX LTR_Pao 77998 78312 44 - . . scaffold40366 WUBlastX LTR_Pao 78258 78503 65 - . . scaffold40366 WUBlastX LTR_Pao 78315 78641 70 - . . scaffold40366 WUBlastX LTR_Pao 78496 78690 21 - . . scaffold40366 WUBlastX LTR_Gypsy 86228 86311 25 - . . scaffold40366 WUBlastX LTR_Gypsy 86694 86963 22 - . . scaffold40366 WUBlastX LTR_Gypsy 86772 86966 24 - . . scaffold40366 WUBlastX LTR_Gypsy 86945 87025 21 - . . scaffold40366 WUBlastX LTR_Gypsy 87037 87522 59 - . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 87193 87519 151 - . . scaffold40366 WUBlastX LTR_Gypsy-Cigr 87317 87784 216 - . . scaffold40366 WUBlastX LTR_Gypsy 87557 88387 115 - . . scaffold40366 WUBlastX LTR_Gypsy 87966 88928 309 - . . scaffold40366 WUBlastX LTR_Gypsy 88149 89063 422 - . . scaffold40366 WUBlastX LTR_Gypsy 88362 90065 400 - . . scaffold40366 WUBlastX LTR_Gypsy 89466 90173 105 - . . scaffold40366 WUBlastX LTR_Gypsy 90081 90206 42 - . . scaffold40368 TRF Tandem_Repeat 105 143 78 + . . scaffold40368 GLEAN promoter 1910 2909 0.999993 + . ID=CGI_10004043; scaffold40368 GLEAN mRNA 2910 21310 0.999993 + . ID=CGI_10004043; scaffold40368 WUBlastX LINE_Penelope 5300 5653 126 - . . scaffold40368 TRF Tandem_Repeat 6062 6126 130 + . . scaffold40368 TRF Tandem_Repeat 8934 9048 230 + . . scaffold40368 WUBlastX DNA_Academ 30537 30902 118 - . . scaffold40368 WUBlastX DNA_Academ 30947 31525 118 - . . scaffold40368 WUBlastX LTR_Ngaro 36008 36427 125 + . . scaffold40368 WUBlastX LTR_Ngaro 36014 36361 154 + . . scaffold40368 WUBlastX LTR_Ngaro 36379 36498 22 + . . scaffold40368 WUBlastX LTR_Ngaro 36646 36891 26 + . . scaffold40368 WUBlastX LTR_Ngaro 36694 36891 50 + . . scaffold40368 WUBlastX LTR_Ngaro 36858 37250 204 + . . scaffold40368 WUBlastX LTR_Ngaro 37271 38533 176 + . . scaffold40368 WUBlastX LTR_Ngaro 37271 37762 246 + . . scaffold40368 WUBlastX LTR_Ngaro 38700 38921 65 + . . scaffold40368 WUBlastX LTR_Ngaro 38932 39222 85 + . . scaffold40368 WUBlastX LTR_Ngaro 39185 39448 98 + . . scaffold40368 WUBlastX LTR_DIRS? 39335 39469 38 + . . scaffold40368 TRF Tandem_Repeat 41818 41853 54 + . . scaffold40368 TRF Tandem_Repeat 41862 42825 1632 + . . scaffold40368 TRF Tandem_Repeat 47149 47215 61 + . . scaffold40368 TRF Tandem_Repeat 47589 48142 252 + . . scaffold40368 TRF Tandem_Repeat 47691 47849 101 + . . scaffold40368 TRF Tandem_Repeat 47729 47832 106 + . . scaffold40368 TRF Tandem_Repeat 47757 48722 517 + . . scaffold40368 TRF Tandem_Repeat 47971 48829 211 + . . scaffold40368 TRF Tandem_Repeat 48054 48449 98 + . . scaffold40368 TRF Tandem_Repeat 48100 48626 255 + . . scaffold40368 TRF Tandem_Repeat 48160 48718 207 + . . scaffold40368 TRF Tandem_Repeat 48164 48585 213 + . . scaffold40368 TRF Tandem_Repeat 48595 48675 51 + . . scaffold40368 TRF Tandem_Repeat 52191 52240 55 + . . scaffold40368 TRF Tandem_Repeat 52243 52305 108 + . . scaffold40368 TRF Tandem_Repeat 64671 64714 88 + . . scaffold40368 GLEAN promoter 64986 65985 1 + . ID=CGI_10004044; scaffold40368 GLEAN mRNA 65986 68416 1 + . ID=CGI_10004044; scaffold40368 GLEAN promoter 83270 84269 0.98826 + . ID=CGI_10004045; scaffold40368 GLEAN mRNA 84270 88251 0.98826 + . ID=CGI_10004045; scaffold40380 GLEAN promoter 1 952 0.977422 + . ID=CGI_10004069; scaffold40380 GLEAN mRNA 953 41769 0.977422 + . ID=CGI_10004069; scaffold40380 TRF Tandem_Repeat 1917 1960 79 + . . scaffold40380 TRF Tandem_Repeat 4206 4237 55 + . . scaffold40380 TRF Tandem_Repeat 4268 5045 1130 + . . scaffold40380 TRF Tandem_Repeat 9802 9845 88 + . . scaffold40380 TRF Tandem_Repeat 20547 20847 239 + . . scaffold40380 TRF Tandem_Repeat 20550 21054 326 + . . scaffold40380 TRF Tandem_Repeat 20940 21127 187 + . . scaffold40380 TRF Tandem_Repeat 33692 34193 468 + . . scaffold40380 TRF Tandem_Repeat 33721 34164 395 + . . scaffold40380 TRF Tandem_Repeat 33956 34277 205 + . . scaffold40380 TRF Tandem_Repeat 34024 34239 94 + . . scaffold40380 TRF Tandem_Repeat 35022 35155 110 + . . scaffold40380 TRF Tandem_Repeat 36201 36299 90 + . . scaffold40380 TRF Tandem_Repeat 43599 43640 84 + . . scaffold40380 TRF Tandem_Repeat 52235 52331 83 + . . scaffold40380 GLEAN mRNA 54630 57258 0.820885 - . ID=CGI_10004070; scaffold40380 GLEAN promoter 57259 58258 0.820885 - . ID=CGI_10004070; scaffold40380 TRF Tandem_Repeat 66251 66300 100 + . . scaffold40380 TRF Tandem_Repeat 69656 69704 62 + . . scaffold40380 TRF Tandem_Repeat 72222 72265 88 + . . scaffold40380 WUBlastX LINE_RTE-X 74720 74890 47 - . . scaffold40380 WUBlastX LINE_RTE-X 74928 75008 24 - . . scaffold40380 GLEAN mRNA 79075 80113 1 - . ID=CGI_10004071; scaffold40380 GLEAN promoter 80114 81113 1 - . ID=CGI_10004071; scaffold40380 GLEAN mRNA 81950 90421 1 - . ID=CGI_10004072; scaffold40380 TRF Tandem_Repeat 84626 84742 83 + . . scaffold40380 GLEAN promoter 90422 90550 1 - . ID=CGI_10004072; scaffold40388 GLEAN promoter 816 1815 1 + . ID=CGI_10004073; scaffold40388 GLEAN mRNA 1816 4249 1 + . ID=CGI_10004073; scaffold40388 GLEAN mRNA 5040 12764 0.990769 - . ID=CGI_10004074; scaffold40388 GLEAN promoter 12765 13764 0.990769 - . ID=CGI_10004074; scaffold40388 GLEAN mRNA 12767 20177 0.999676 - . ID=CGI_10004075; scaffold40388 WUBlastX LTR_DIRS 16936 17109 21 - . . scaffold40388 GLEAN promoter 20178 21177 0.999676 - . ID=CGI_10004075; scaffold40388 GLEAN mRNA 24127 39692 0.354772 - . ID=CGI_10004076; scaffold40388 TRF Tandem_Repeat 24822 24876 110 + . . scaffold40388 TRF Tandem_Repeat 26882 26932 102 + . . scaffold40388 TRF Tandem_Repeat 29546 29597 104 + . . scaffold40388 TRF Tandem_Repeat 34000 34057 64 + . . scaffold40388 TRF Tandem_Repeat 34009 34069 58 + . . scaffold40388 GLEAN promoter 39693 40692 0.354772 - . ID=CGI_10004076; scaffold40388 GLEAN promoter 43696 44695 0.991247 + . ID=CGI_10004077; scaffold40388 TRF Tandem_Repeat 44105 44166 124 + . . scaffold40388 GLEAN mRNA 44696 45235 0.991247 + . ID=CGI_10004077; scaffold40388 TRF Tandem_Repeat 50810 51512 629 + . . scaffold40388 GLEAN mRNA 54096 77071 0.999515 - . ID=CGI_10004078; scaffold40388 TRF Tandem_Repeat 65298 65347 57 + . . scaffold40388 GLEAN promoter 77072 78071 0.999515 - . ID=CGI_10004078; scaffold40388 GLEAN promoter 79998 80997 0.929543 + . ID=CGI_10004079; scaffold40388 GLEAN mRNA 80998 89104 0.929543 + . ID=CGI_10004079; scaffold40388 TRF Tandem_Repeat 89347 89407 122 + . . scaffold40390 GLEAN promoter 381 1380 0.999957 + . ID=CGI_10004049; scaffold40390 GLEAN mRNA 1381 20673 0.999957 + . ID=CGI_10004049; scaffold40390 GLEAN promoter 31892 32891 0.999992 + . ID=CGI_10004050; scaffold40390 GLEAN mRNA 32892 40865 0.999992 + . ID=CGI_10004050; scaffold40390 TRF Tandem_Repeat 33320 33345 52 + . . scaffold40390 TRF Tandem_Repeat 33609 33644 72 + . . scaffold40390 GLEAN promoter 40282 41281 1 + . ID=CGI_10004051; scaffold40390 GLEAN mRNA 41282 41849 1 + . ID=CGI_10004051; scaffold40390 GLEAN promoter 45698 46697 0.897316 + . ID=CGI_10004052; scaffold40390 GLEAN mRNA 46698 56356 0.897316 + . ID=CGI_10004052; scaffold40390 WUBlastX LTR_Gypsy 48526 48657 39 + . . scaffold40390 GLEAN mRNA 56412 67771 0.991246 - . ID=CGI_10004053; scaffold40390 TRF Tandem_Repeat 64939 64979 82 + . . scaffold40390 GLEAN promoter 67772 68771 0.991246 - . ID=CGI_10004053; scaffold40390 GLEAN mRNA 76953 84773 1 - . ID=CGI_10004054; scaffold40390 GLEAN promoter 84774 85773 1 - . ID=CGI_10004054; scaffold40396 TRF Tandem_Repeat 1979 2017 78 + . . scaffold40396 GLEAN mRNA 2119 27704 0.990545 - . ID=CGI_10004066; scaffold40396 WUBlastX LINE_Penelope 2146 2340 29 - . . scaffold40396 TRF Tandem_Repeat 13792 13847 112 + . . scaffold40396 TRF Tandem_Repeat 22651 22742 116 + . . scaffold40396 GLEAN promoter 27705 28704 0.990545 - . ID=CGI_10004066; scaffold40396 TRF Tandem_Repeat 28428 28552 114 + . . scaffold40396 GLEAN mRNA 29297 32814 1 - . ID=CGI_10004067; scaffold40396 GLEAN promoter 32815 33814 1 - . ID=CGI_10004067; scaffold40396 GLEAN promoter 35879 36878 0.600233 + . ID=CGI_10004068; scaffold40396 GLEAN mRNA 36879 57112 0.600233 + . ID=CGI_10004068; scaffold40396 TRF Tandem_Repeat 65175 65206 64 + . . scaffold40396 TRF Tandem_Repeat 65819 65853 54 + . . scaffold40396 TRF Tandem_Repeat 85609 85649 75 + . . scaffold404 GLEAN mRNA 341 1021 0.999998 - . ID=CGI_10013599; scaffold404 GLEAN promoter 1022 2021 0.999998 - . ID=CGI_10013599; scaffold404 GLEAN promoter 3065 4064 1 + . ID=CGI_10013600; scaffold404 GLEAN mRNA 4065 7431 1 + . ID=CGI_10013600; scaffold404 GLEAN promoter 11772 12771 1 + . ID=CGI_10013601; scaffold404 GLEAN mRNA 12772 19407 1 + . ID=CGI_10013601; scaffold404 WUBlastX LTR_Gypsy 25236 25463 20 - . . scaffold404 WUBlastX LTR_Gypsy 25367 26086 243 - . . scaffold404 WUBlastX LTR_Gypsy 25463 26062 421 - . . scaffold404 WUBlastX LTR_Gypsy 26077 27183 312 - . . scaffold404 WUBlastX LTR_Gypsy 27185 27892 314 - . . scaffold404 WUBlastX LTR_Gypsy 27185 27775 343 - . . scaffold404 WUBlastX LTR_Gypsy 28899 29093 69 - . . scaffold404 WUBlastX LTR_Gypsy 29134 29337 82 - . . scaffold404 GLEAN promoter 30353 31352 0.946175 + . ID=CGI_10013602; scaffold404 GLEAN mRNA 31353 31763 0.946175 + . ID=CGI_10013602; scaffold404 TRF Tandem_Repeat 69010 69280 285 + . . scaffold404 TRF Tandem_Repeat 69473 69701 309 + . . scaffold404 GLEAN mRNA 74476 80325 0.99427 - . ID=CGI_10013603; scaffold404 TRF Tandem_Repeat 75606 76372 992 + . . scaffold404 WUBlastX LINE_L1-Tx1 77820 78518 68 + . . scaffold404 GLEAN promoter 80326 81325 0.99427 - . ID=CGI_10013603; scaffold404 TRF Tandem_Repeat 84920 84966 94 + . . scaffold404 GLEAN promoter 91932 92931 0.991006 + . ID=CGI_10013604; scaffold404 GLEAN mRNA 92932 128390 0.991006 + . ID=CGI_10013604; scaffold404 TRF Tandem_Repeat 122048 122091 88 + . . scaffold404 TRF Tandem_Repeat 136231 136268 76 + . . scaffold404 TRF Tandem_Repeat 143317 143357 82 + . . scaffold404 TRF Tandem_Repeat 171858 171894 56 + . . scaffold404 TRF Tandem_Repeat 184650 184718 138 + . . scaffold404 TRF Tandem_Repeat 192442 192494 74 + . . scaffold404 TRF Tandem_Repeat 206878 206913 72 + . . scaffold404 TRF Tandem_Repeat 207850 207883 68 + . . scaffold404 TRF Tandem_Repeat 209626 209693 136 + . . scaffold404 TRF Tandem_Repeat 212291 212426 71 + . . scaffold404 WUBlastX LINE_Penelope 221941 222177 78 + . . scaffold404 WUBlastX LINE_Penelope 221956 222249 21 + . . scaffold404 WUBlastX LINE_Penelope 221971 222168 110 + . . scaffold404 WUBlastX LINE_Penelope 222225 222557 75 + . . scaffold404 WUBlastX LINE_Penelope 222506 223045 108 + . . scaffold404 TRF Tandem_Repeat 224075 224115 82 + . . scaffold404 TRF Tandem_Repeat 224416 224442 54 + . . scaffold404 TRF Tandem_Repeat 232600 233603 1531 + . . scaffold404 WUBlastX DNA_TcMar-Tc2 237116 237697 299 - . . scaffold404 WUBlastX DNA_TcMar-Tc2 237690 238346 419 - . . scaffold404 TRF Tandem_Repeat 269769 269879 105 + . . scaffold404 TRF Tandem_Repeat 269963 270073 105 + . . scaffold404 TRF Tandem_Repeat 276735 276777 86 + . . scaffold404 TRF Tandem_Repeat 277673 277716 88 + . . scaffold404 GLEAN promoter 282082 283081 0.957283 + . ID=CGI_10013605; scaffold404 GLEAN mRNA 283082 283477 0.957283 + . ID=CGI_10013605; scaffold404 TRF Tandem_Repeat 284372 284412 82 + . . scaffold404 TRF Tandem_Repeat 288167 288206 80 + . . scaffold404 GLEAN promoter 288306 289305 1 + . ID=CGI_10013606; scaffold404 GLEAN mRNA 289306 289497 1 + . ID=CGI_10013606; scaffold404 TRF Tandem_Repeat 293537 293582 92 + . . scaffold404 TRF Tandem_Repeat 294057 294106 93 + . . scaffold404 TRF Tandem_Repeat 294899 294979 162 + . . scaffold404 TRF Tandem_Repeat 303618 303645 56 + . . scaffold404 WUBlastX DNA_IS4EU 303702 304031 70 + . . scaffold404 WUBlastX DNA_Kolobok-IS4 303927 304112 21 + . . scaffold404 WUBlastX DNA_IS4EU 304390 304872 103 + . . scaffold404 WUBlastX DNA_IS4EU 304570 304896 117 + . . scaffold404 WUBlastX DNA_IS4EU 304868 305008 32 + . . scaffold404 WUBlastX DNA_IS4EU 305918 306124 92 - . . scaffold404 WUBlastX DNA_Kolobok-IS4 306133 306339 50 - . . scaffold404 WUBlastX DNA_IS4EU 306939 307097 47 - . . scaffold404 WUBlastX DNA_IS4EU 306939 307286 33 - . . scaffold404 WUBlastX DNA_IS4EU 306966 307136 47 - . . scaffold404 WUBlastX DNA_IS4EU 308948 309244 124 - . . scaffold404 GLEAN mRNA 311425 335048 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX LTR_DIRS 317796 318140 168 + . . scaffold404 WUBlastX LTR_DIRS 318101 318646 34 + . . scaffold404 WUBlastX LTR_DIRS 318413 318616 75 + . . scaffold404 WUBlastX LTR_DIRS 318644 318871 61 + . . scaffold404 WUBlastX LTR_DIRS 320331 320609 36 + . . scaffold404 WUBlastX LTR_DIRS 320633 320692 26 + . . scaffold404 WUBlastX LTR_DIRS 320698 320841 54 + . . scaffold404 TRF Tandem_Repeat 321313 321340 56 + . . scaffold404 TRF Tandem_Repeat 322978 323915 1074 + . . scaffold404 TRF Tandem_Repeat 324225 324267 59 + . . scaffold404 TRF Tandem_Repeat 324319 324408 61 + . . scaffold404 TRF Tandem_Repeat 326413 326463 102 + . . scaffold404 GLEAN promoter 335049 336048 0.297334 - . ID=CGI_10013607; scaffold404 WUBlastX DNA_Zator 335877 338735 1397 + . . scaffold404 WUBlastX DNA_Zator 338886 339053 53 + . . scaffold404 WUBlastX DNA_Zator 340067 340234 54 + . . scaffold404 TRF Tandem_Repeat 342329 342377 80 + . . scaffold404 GLEAN mRNA 344802 353437 0.651123 - . ID=CGI_10013608; scaffold404 TRF Tandem_Repeat 345301 345540 261 + . . scaffold404 GLEAN promoter 353438 354437 0.651123 - . ID=CGI_10013608; scaffold404 TRF Tandem_Repeat 357296 357353 82 + . . scaffold404 TRF Tandem_Repeat 357296 357341 56 + . . scaffold404 TRF Tandem_Repeat 357296 357353 82 + . . scaffold404 TRF Tandem_Repeat 358992 359045 62 + . . scaffold40404 TRF Tandem_Repeat 3010 4479 2422 + . . scaffold40404 TRF Tandem_Repeat 6267 6753 848 + . . scaffold40404 TRF Tandem_Repeat 6267 7013 867 + . . scaffold40404 TRF Tandem_Repeat 6723 7144 380 + . . scaffold40404 TRF Tandem_Repeat 6729 7123 184 + . . scaffold40404 TRF Tandem_Repeat 6748 7171 327 + . . scaffold40404 TRF Tandem_Repeat 7027 7123 50 + . . scaffold40404 TRF Tandem_Repeat 7031 7123 51 + . . scaffold40404 TRF Tandem_Repeat 11621 12053 276 + . . scaffold40404 TRF Tandem_Repeat 11658 12053 140 + . . scaffold40404 TRF Tandem_Repeat 12394 13281 1069 + . . scaffold40404 TRF Tandem_Repeat 13746 14700 1528 + . . scaffold40404 TRF Tandem_Repeat 27978 28082 165 + . . scaffold40404 TRF Tandem_Repeat 28079 28317 460 + . . scaffold40404 TRF Tandem_Repeat 32269 32672 605 + . . scaffold40404 TRF Tandem_Repeat 36526 36655 59 + . . scaffold40404 TRF Tandem_Repeat 36527 36655 92 + . . scaffold40404 TRF Tandem_Repeat 36532 36655 74 + . . scaffold40404 TRF Tandem_Repeat 37755 37843 94 + . . scaffold40404 TRF Tandem_Repeat 37755 37843 126 + . . scaffold40404 TRF Tandem_Repeat 39392 39432 82 + . . scaffold40404 GLEAN mRNA 46560 47789 0.999998 - . ID=CGI_10004085; scaffold40404 GLEAN promoter 47790 48789 0.999998 - . ID=CGI_10004085; scaffold40404 TRF Tandem_Repeat 49043 49086 88 + . . scaffold40404 WUBlastX LINE_RTE-X 49481 49666 48 - . . scaffold40404 TRF Tandem_Repeat 52391 52584 298 + . . scaffold40404 TRF Tandem_Repeat 52391 52622 322 + . . scaffold40404 TRF Tandem_Repeat 56942 57279 489 + . . scaffold40404 TRF Tandem_Repeat 57157 57290 82 + . . scaffold40404 GLEAN mRNA 60176 84997 0.660218 - . ID=CGI_10004086; scaffold40404 TRF Tandem_Repeat 64079 64117 78 + . . scaffold40404 TRF Tandem_Repeat 64880 66388 2065 + . . scaffold40404 TRF Tandem_Repeat 70170 70208 55 + . . scaffold40404 TRF Tandem_Repeat 72442 72864 632 + . . scaffold40404 TRF Tandem_Repeat 73805 73901 74 + . . scaffold40404 GLEAN promoter 84998 85997 0.660218 - . ID=CGI_10004086; scaffold40406 TRF Tandem_Repeat 692 759 64 + . . scaffold40406 TRF Tandem_Repeat 692 751 84 + . . scaffold40406 TRF Tandem_Repeat 701 760 75 + . . scaffold40406 TRF Tandem_Repeat 4941 5030 153 + . . scaffold40406 GLEAN mRNA 13348 25893 0.99628 - . ID=CGI_10004031; scaffold40406 TRF Tandem_Repeat 20211 20279 93 + . . scaffold40406 GLEAN promoter 25894 26893 0.99628 - . ID=CGI_10004031; scaffold40406 WUBlastX LINE_CR1 27665 28333 247 + . . scaffold40406 WUBlastX LINE_L1-Tx1 29148 32804 1086 + . . scaffold40406 WUBlastX DNA_Harbinger 37990 38238 81 - . . scaffold40406 TRF Tandem_Repeat 39030 39074 81 + . . scaffold40406 GLEAN mRNA 40970 46185 0.593391 - . ID=CGI_10004032; scaffold40406 TRF Tandem_Repeat 41848 41901 108 + . . scaffold40406 GLEAN promoter 46186 47185 0.593391 - . ID=CGI_10004032; scaffold40412 GLEAN mRNA 4188 16676 0.991013 - . ID=CGI_10004112; scaffold40412 WUBlastX DNA_Harbinger 7174 7386 69 + . . scaffold40412 WUBlastX DNA_Harbinger 9466 9624 51 - . . scaffold40412 GLEAN promoter 16677 17676 0.991013 - . ID=CGI_10004112; scaffold40412 TRF Tandem_Repeat 31667 31708 84 + . . scaffold40412 TRF Tandem_Repeat 37908 38185 274 + . . scaffold40412 TRF Tandem_Repeat 37908 38185 373 + . . scaffold40412 TRF Tandem_Repeat 38798 39206 320 + . . scaffold40412 TRF Tandem_Repeat 38798 39208 364 + . . scaffold40412 TRF Tandem_Repeat 38798 39206 320 + . . scaffold40412 TRF Tandem_Repeat 38798 39208 323 + . . scaffold40412 TRF Tandem_Repeat 40929 41138 203 + . . scaffold40412 TRF Tandem_Repeat 46887 46977 101 + . . scaffold40412 TRF Tandem_Repeat 50326 50369 88 + . . scaffold40412 TRF Tandem_Repeat 51868 53853 2390 + . . scaffold40412 TRF Tandem_Repeat 51868 53853 2393 + . . scaffold40412 GLEAN mRNA 54206 62812 0.882919 - . ID=CGI_10004113; scaffold40412 GLEAN promoter 62813 63812 0.882919 - . ID=CGI_10004113; scaffold40412 TRF Tandem_Repeat 66566 66613 96 + . . scaffold40412 GLEAN promoter 69856 70855 0.253275 + . ID=CGI_10004114; scaffold40412 GLEAN mRNA 70856 89195 0.253275 + . ID=CGI_10004114; scaffold40412 GLEAN mRNA 80746 83892 0.999999 - . ID=CGI_10004115; scaffold40412 TRF Tandem_Repeat 82406 82450 90 + . . scaffold40412 TRF Tandem_Repeat 82661 83550 1359 + . . scaffold40412 GLEAN promoter 83893 84892 0.999999 - . ID=CGI_10004115; scaffold40412 TRF Tandem_Repeat 90875 91000 136 + . . scaffold40412 TRF Tandem_Repeat 90883 90998 182 + . . scaffold40412 TRF Tandem_Repeat 91244 91284 82 + . . scaffold40420 WUBlastX LTR_DIRS 1 393 247 - . . scaffold40420 WUBlastX LTR_DIRS 1 504 195 - . . scaffold40420 TRF Tandem_Repeat 2418 3027 826 + . . scaffold40420 GLEAN mRNA 2951 10526 1 - . ID=CGI_10004096; scaffold40420 TRF Tandem_Repeat 7131 7174 88 + . . scaffold40420 GLEAN promoter 10527 11526 1 - . ID=CGI_10004096; scaffold40420 TRF Tandem_Repeat 13873 13912 80 + . . scaffold40420 TRF Tandem_Repeat 14596 14646 102 + . . scaffold40420 TRF Tandem_Repeat 15729 16167 515 + . . scaffold40420 GLEAN promoter 20005 21004 1 + . ID=CGI_10004097; scaffold40420 GLEAN mRNA 21005 35624 1 + . ID=CGI_10004097; scaffold40420 TRF Tandem_Repeat 33180 34213 924 + . . scaffold40420 GLEAN mRNA 36191 42467 1 - . ID=CGI_10004098; scaffold40420 WUBlastX LINE_CR1 41003 41650 93 + . . scaffold40420 WUBlastX LINE_CR1 41003 41326 149 + . . scaffold40420 GLEAN promoter 41818 42817 1 + . ID=CGI_10004099; scaffold40420 GLEAN promoter 42468 43467 1 - . ID=CGI_10004098; scaffold40420 GLEAN mRNA 42818 55184 1 + . ID=CGI_10004099; scaffold40420 TRF Tandem_Repeat 50273 50309 74 + . . scaffold40420 WUBlastX LTR_Ngaro 89114 89467 97 - . . scaffold40420 WUBlastX LTR_Ngaro 89846 90655 242 - . . scaffold40420 WUBlastX LTR_Ngaro 89858 90835 198 - . . scaffold40424 WUBlastX LINE_Penelope 248 574 67 - . . scaffold40424 WUBlastX LINE_Penelope 305 577 101 - . . scaffold40424 WUBlastX LINE_Penelope 519 950 106 - . . scaffold40424 WUBlastX LINE_Penelope 1711 1983 101 - . . scaffold40424 WUBlastX LINE_Penelope 1925 2356 106 - . . scaffold40424 GLEAN mRNA 4732 9553 1 - . ID=CGI_10004126; scaffold40424 GLEAN promoter 9554 10553 1 - . ID=CGI_10004126; scaffold40424 GLEAN mRNA 14342 47521 0.651302 - . ID=CGI_10004127; scaffold40424 WUBlastX DNA_Sola 25032 25325 119 - . . scaffold40424 WUBlastX DNA_Sola 25065 25292 160 - . . scaffold40424 WUBlastX DNA_Sola 26286 26483 126 - . . scaffold40424 WUBlastX DNA_Sola 26807 27022 59 - . . scaffold40424 TRF Tandem_Repeat 28065 28121 51 + . . scaffold40424 TRF Tandem_Repeat 29559 29603 90 + . . scaffold40424 TRF Tandem_Repeat 41556 41634 158 + . . scaffold40424 GLEAN promoter 47522 48521 0.651302 - . ID=CGI_10004127; scaffold40424 TRF Tandem_Repeat 48778 48815 51 + . . scaffold40424 WUBlastX DNA_Harbinger 60302 60460 45 + . . scaffold40424 WUBlastX DNA_Harbinger 60463 60699 89 + . . scaffold40424 WUBlastX DNA_Harbinger 60800 60865 28 + . . scaffold40424 WUBlastX DNA_Harbinger 60871 61176 57 + . . scaffold40424 TRF Tandem_Repeat 66194 66238 90 + . . scaffold40424 TRF Tandem_Repeat 69943 70055 86 + . . scaffold40424 TRF Tandem_Repeat 71059 71153 74 + . . scaffold40424 TRF Tandem_Repeat 71079 71169 69 + . . scaffold40424 WUBlastX LINE_L1-Tx1 82696 82752 32 + . . scaffold40424 WUBlastX LINE_L1-Tx1 82772 83470 348 + . . scaffold40424 WUBlastX LINE_L1-Tx1 83550 84242 355 + . . scaffold40424 WUBlastX LINE_L1-Tx1 84157 85146 616 + . . scaffold40424 WUBlastX LINE_L1 84172 85365 111 + . . scaffold40424 WUBlastX LINE_L1 85341 85538 33 + . . scaffold40424 WUBlastX LINE_L1-Tx1 85642 86265 75 + . . scaffold40424 WUBlastX LINE_L1-Tx1 85699 86097 93 + . . scaffold40438 WUBlastX LINE_L1-Tx1 2174 2986 60 - . . scaffold40438 WUBlastX LINE_L1-Tx1 2261 2653 89 - . . scaffold40438 WUBlastX LINE_L1-Tx1 3027 3548 205 - . . scaffold40438 WUBlastX LINE_L1 3222 3614 24 - . . scaffold40438 WUBlastX LINE_L1-Tx1 4267 5295 294 - . . scaffold40438 WUBlastX LINE_L1-Tx1 4432 5340 512 - . . scaffold40438 WUBlastX LINE_L1 5376 5585 22 - . . scaffold40438 WUBlastX LINE_L1 5412 5567 32 - . . scaffold40438 WUBlastX LINE_L1 5415 5543 39 - . . scaffold40438 WUBlastX LINE_L1-Tx1 6291 6653 146 - . . scaffold40438 GLEAN mRNA 8874 9350 0.617633 - . ID=CGI_10004080; scaffold40438 WUBlastX LINE_L2 9326 9700 41 - . . scaffold40438 GLEAN promoter 9351 10350 0.617633 - . ID=CGI_10004080; scaffold40438 WUBlastX LINE_L2 9407 9889 68 - . . scaffold40438 WUBlastX LINE_L2 9407 9694 92 - . . scaffold40438 WUBlastX LINE_L1 9407 9766 75 - . . scaffold40438 WUBlastX LINE_L1-Tx1 10939 11406 34 - . . scaffold40438 WUBlastX LINE_L1-Tx1 11375 12607 694 - . . scaffold40438 TRF Tandem_Repeat 23704 24674 1430 + . . scaffold40438 GLEAN promoter 53227 54226 0.617242 + . ID=CGI_10004081; scaffold40438 TRF Tandem_Repeat 53735 54071 356 + . . scaffold40438 GLEAN mRNA 54227 80857 0.617242 + . ID=CGI_10004081; scaffold40438 TRF Tandem_Repeat 66011 66726 887 + . . scaffold40438 TRF Tandem_Repeat 76737 76768 64 + . . scaffold40438 TRF Tandem_Repeat 79724 79766 86 + . . scaffold40438 TRF Tandem_Repeat 80077 80103 54 + . . scaffold40438 TRF Tandem_Repeat 82972 83151 227 + . . scaffold40438 GLEAN promoter 83454 84453 0.999415 + . ID=CGI_10004082; scaffold40438 WUBlastX DNA_Maverick 83538 83972 44 + . . scaffold40438 GLEAN mRNA 84454 84789 0.999415 + . ID=CGI_10004082; scaffold40438 TRF Tandem_Repeat 86567 86629 90 + . . scaffold40438 TRF Tandem_Repeat 86836 86915 58 + . . scaffold40438 GLEAN mRNA 87677 87922 0.557794 - . ID=CGI_10004083; scaffold40438 GLEAN promoter 87923 88922 0.557794 - . ID=CGI_10004083; scaffold40438 GLEAN mRNA 88089 89012 0.517468 - . ID=CGI_10004084; scaffold40438 GLEAN promoter 89013 90012 0.517468 - . ID=CGI_10004084; scaffold40440 TRF Tandem_Repeat 2406 2478 98 + . . scaffold40440 TRF Tandem_Repeat 5900 5986 66 + . . scaffold40440 WUBlastX LTR_Gypsy 10578 11774 914 - . . scaffold40440 WUBlastX LTR_Gypsy 11779 14787 1985 - . . scaffold40440 WUBlastX LTR_Gypsy 14629 14820 37 - . . scaffold40440 WUBlastX LTR_Gypsy 14810 14968 21 - . . scaffold40440 WUBlastX LTR_Gypsy 14853 15818 396 - . . scaffold40440 GLEAN promoter 15484 16483 0.811713 + . ID=CGI_10004142; scaffold40440 GLEAN mRNA 16484 36402 0.811713 + . ID=CGI_10004142; scaffold40440 TRF Tandem_Repeat 21243 21376 119 + . . scaffold40440 TRF Tandem_Repeat 22387 22503 118 + . . scaffold40440 TRF Tandem_Repeat 22997 23024 56 + . . scaffold40440 WUBlastX LTR_Gypsy 33215 34165 83 - . . scaffold40440 WUBlastX LTR_Gypsy 33644 34804 136 - . . scaffold40440 WUBlastX LTR_Gypsy-Cigr 34274 35053 166 - . . scaffold40440 WUBlastX LTR_Gypsy 34508 35182 70 - . . scaffold40440 WUBlastX LINE_L1 37462 38199 48 + . . scaffold40440 WUBlastX LINE_L1 37621 38352 218 + . . scaffold40440 WUBlastX LINE_CR1 38404 39033 88 + . . scaffold40440 WUBlastX LINE_RTE-X 38515 39465 151 + . . scaffold40440 WUBlastX LINE_RTE-X 38707 41958 1031 + . . scaffold40440 TRF Tandem_Repeat 43003 43094 65 + . . scaffold40440 TRF Tandem_Repeat 43391 43424 68 + . . scaffold40440 WUBlastX LTR_Ngaro 50758 50877 20 + . . scaffold40440 GLEAN mRNA 51085 65707 0.320377 - . ID=CGI_10004144; scaffold40440 WUBlastX LTR_Ngaro 51469 52263 353 + . . scaffold40440 WUBlastX LTR_DIRS 52260 52532 23 + . . scaffold40440 WUBlastX LTR_Ngaro 52314 52529 63 + . . scaffold40440 WUBlastX LTR_Ngaro 52511 52627 20 + . . scaffold40440 WUBlastX LINE_Penelope 52939 53352 59 + . . scaffold40440 WUBlastX LINE_Penelope 53023 54330 262 + . . scaffold40440 WUBlastX LINE_Penelope 53950 54405 33 + . . scaffold40440 WUBlastX LINE_Penelope 54413 54550 28 + . . scaffold40440 WUBlastX LINE_Penelope 54428 54544 32 + . . scaffold40440 WUBlastX LTR_Ngaro 54722 55012 34 + . . scaffold40440 WUBlastX LTR_Ngaro 54737 55063 24 + . . scaffold40440 WUBlastX LTR_Ngaro 54746 54973 54 + . . scaffold40440 WUBlastX LTR_Ngaro 54782 54988 56 + . . scaffold40440 WUBlastX LTR_Ngaro 55240 55485 71 + . . scaffold40440 TRF Tandem_Repeat 57141 57181 82 + . . scaffold40440 GLEAN promoter 58915 59914 0.499918 + . ID=CGI_10004145; scaffold40440 GLEAN mRNA 59915 88789 0.499918 + . ID=CGI_10004145; scaffold40440 TRF Tandem_Repeat 60085 60147 117 + . . scaffold40440 TRF Tandem_Repeat 60833 61837 1475 + . . scaffold40440 TRF Tandem_Repeat 62457 62496 80 + . . scaffold40440 TRF Tandem_Repeat 62993 63048 112 + . . scaffold40440 GLEAN promoter 65708 66707 0.320377 - . ID=CGI_10004144; scaffold40440 GLEAN mRNA 73689 85279 0.999999 - . ID=CGI_10004146; scaffold40440 TRF Tandem_Repeat 75227 75276 100 + . . scaffold40440 TRF Tandem_Repeat 79806 79857 95 + . . scaffold40440 TRF Tandem_Repeat 81467 81538 99 + . . scaffold40440 TRF Tandem_Repeat 82325 82351 54 + . . scaffold40440 GLEAN promoter 85280 86279 0.999999 - . ID=CGI_10004146; scaffold40442 GLEAN mRNA 3610 14551 0.993907 - . ID=CGI_10004106; scaffold40442 GLEAN promoter 14552 15551 0.993907 - . ID=CGI_10004106; scaffold40442 GLEAN mRNA 17007 33177 0.988748 - . ID=CGI_10004107; scaffold40442 GLEAN promoter 33178 34177 0.988748 - . ID=CGI_10004107; scaffold40442 GLEAN mRNA 42942 48375 1 - . ID=CGI_10004108; scaffold40442 GLEAN promoter 48376 49375 1 - . ID=CGI_10004108; scaffold40442 WUBlastX LINE_L2 49021 49158 56 + . . scaffold40442 GLEAN mRNA 51588 58002 0.535158 - . ID=CGI_10004109; scaffold40442 TRF Tandem_Repeat 54392 54510 80 + . . scaffold40442 TRF Tandem_Repeat 54398 54527 156 + . . scaffold40442 GLEAN promoter 58003 59002 0.535158 - . ID=CGI_10004109; scaffold40442 TRF Tandem_Repeat 58294 58335 66 + . . scaffold40442 GLEAN promoter 59486 60485 1 + . ID=CGI_10004110; scaffold40442 GLEAN mRNA 60486 62929 1 + . ID=CGI_10004110; scaffold40442 WUBlastX LINE_L1 72621 75032 561 + . . scaffold40442 WUBlastX LINE_L1-Tx1 73296 75053 695 + . . scaffold40442 WUBlastX LINE_L1 73809 75533 516 + . . scaffold40442 GLEAN promoter 75753 76752 0.59335 + . ID=CGI_10004111; scaffold40442 GLEAN mRNA 76753 77824 0.59335 + . ID=CGI_10004111; scaffold40442 TRF Tandem_Repeat 78109 78184 57 + . . scaffold40442 WUBlastX LINE_L2 85271 86053 270 - . . scaffold40442 WUBlastX LINE_L2 85610 86239 40 - . . scaffold40442 WUBlastX LINE_L2 86641 86709 20 - . . scaffold40442 WUBlastX LINE_L2 86910 86969 20 - . . scaffold40442 WUBlastX DNA_PiggyBac 88360 88449 26 + . . scaffold40442 WUBlastX DNA_PiggyBac 88381 88455 34 + . . scaffold40442 TRF Tandem_Repeat 89603 89657 110 + . . scaffold40442 WUBlastX DNA_PiggyBac 89687 89899 61 + . . scaffold40442 WUBlastX DNA_PiggyBac 89720 89914 93 + . . scaffold40442 WUBlastX DNA_PiggyBac 90286 90651 150 + . . scaffold40454 TRF Tandem_Repeat 161 194 50 + . . scaffold40454 TRF Tandem_Repeat 7739 7794 112 + . . scaffold40454 TRF Tandem_Repeat 10179 10223 90 + . . scaffold40454 GLEAN promoter 13085 14084 1 + . ID=CGI_10004116; scaffold40454 TRF Tandem_Repeat 13895 13930 72 + . . scaffold40454 GLEAN mRNA 14085 14942 1 + . ID=CGI_10004116; scaffold40454 GLEAN promoter 15342 16341 0.999372 + . ID=CGI_10004117; scaffold40454 TRF Tandem_Repeat 15593 15655 126 + . . scaffold40454 GLEAN mRNA 16342 16641 0.999372 + . ID=CGI_10004117; scaffold40454 TRF Tandem_Repeat 27931 27992 65 + . . scaffold40454 TRF Tandem_Repeat 34180 34254 123 + . . scaffold40454 TRF Tandem_Repeat 35115 35322 292 + . . scaffold40454 TRF Tandem_Repeat 36833 36894 79 + . . scaffold40454 GLEAN promoter 38222 39221 0.999029 + . ID=CGI_10004118; scaffold40454 GLEAN mRNA 39222 51519 0.999029 + . ID=CGI_10004118; scaffold40454 TRF Tandem_Repeat 44917 44965 71 + . . scaffold40454 TRF Tandem_Repeat 44919 44967 62 + . . scaffold40454 GLEAN mRNA 73213 73464 0.430124 - . ID=CGI_10004119; scaffold40454 GLEAN promoter 73465 74464 0.430124 - . ID=CGI_10004119; scaffold40454 TRF Tandem_Repeat 78524 78582 118 + . . scaffold40454 GLEAN promoter 79162 80161 0.999797 + . ID=CGI_10004121; scaffold40454 GLEAN mRNA 79184 79441 0.999372 - . ID=CGI_10004120; scaffold40454 GLEAN promoter 79442 80441 0.999372 - . ID=CGI_10004120; scaffold40454 GLEAN mRNA 80162 81494 0.999797 + . ID=CGI_10004121; scaffold40454 TRF Tandem_Repeat 80258 80334 93 + . . scaffold40454 WUBlastX LINE_RTE-BovB 83168 83617 33 + . . scaffold40454 GLEAN mRNA 83347 90444 1 - . ID=CGI_10004122; scaffold40454 WUBlastX LINE_RTE-BovB 83456 83626 37 + . . scaffold40454 WUBlastX DNA_TcMar-Tc1 85794 86804 212 - . . scaffold40454 GLEAN promoter 90445 91444 1 - . ID=CGI_10004122; scaffold40456 TRF Tandem_Repeat 422 477 112 + . . scaffold40456 GLEAN mRNA 12941 13660 1 - . ID=CGI_10004087; scaffold40456 GLEAN promoter 13661 14660 1 - . ID=CGI_10004087; scaffold40456 TRF Tandem_Repeat 13686 13976 266 + . . scaffold40456 TRF Tandem_Repeat 14492 16238 2522 + . . scaffold40456 TRF Tandem_Repeat 14492 18117 5528 + . . scaffold40456 TRF Tandem_Repeat 16237 18117 3127 + . . scaffold40456 GLEAN promoter 26553 27552 0.384037 + . ID=CGI_10004088; scaffold40456 GLEAN mRNA 27553 45443 0.384037 + . ID=CGI_10004088; scaffold40456 GLEAN mRNA 33148 39630 1 - . ID=CGI_10004089; scaffold40456 TRF Tandem_Repeat 34676 35164 726 + . . scaffold40456 GLEAN promoter 39631 40630 1 - . ID=CGI_10004089; scaffold40456 TRF Tandem_Repeat 43748 44016 79 + . . scaffold40456 TRF Tandem_Repeat 43865 44031 183 + . . scaffold40456 TRF Tandem_Repeat 43866 44031 165 + . . scaffold40456 GLEAN mRNA 46206 47898 0.575468 - . ID=CGI_10004090; scaffold40456 GLEAN promoter 47899 48898 0.575468 - . ID=CGI_10004090; scaffold40456 TRF Tandem_Repeat 56405 56590 219 + . . scaffold40456 TRF Tandem_Repeat 58092 58260 302 + . . scaffold40456 TRF Tandem_Repeat 58111 58262 87 + . . scaffold40456 TRF Tandem_Repeat 58224 58755 1046 + . . scaffold40456 TRF Tandem_Repeat 58825 58977 225 + . . scaffold40456 TRF Tandem_Repeat 59571 59858 504 + . . scaffold40456 TRF Tandem_Repeat 59571 60037 646 + . . scaffold40456 TRF Tandem_Repeat 59571 60037 655 + . . scaffold40456 TRF Tandem_Repeat 59894 60037 279 + . . scaffold40456 GLEAN promoter 61252 62251 0.995749 + . ID=CGI_10004091; scaffold40456 GLEAN mRNA 62252 81399 0.995749 + . ID=CGI_10004091; scaffold40456 TRF Tandem_Repeat 74874 75118 151 + . . scaffold40456 TRF Tandem_Repeat 79521 79674 164 + . . scaffold40456 TRF Tandem_Repeat 88136 88166 53 + . . scaffold40456 WUBlastX LTR_Pao 89221 91104 91 + . . scaffold40456 WUBlastX LTR_Pao 89587 91212 419 + . . scaffold40476 TRF Tandem_Repeat 376 419 70 + . . scaffold40476 TRF Tandem_Repeat 389 422 50 + . . scaffold40476 TRF Tandem_Repeat 427 1116 1168 + . . scaffold40476 WUBlastX LTR_Gypsy 19628 20242 463 - . . scaffold40476 WUBlastX LTR_Gypsy 20224 20979 483 - . . scaffold40476 WUBlastX LTR_Gypsy 20464 22647 1371 - . . scaffold40476 WUBlastX LTR_Gypsy 22351 22710 91 - . . scaffold40476 WUBlastX LTR_Gypsy 22995 23633 129 - . . scaffold40476 WUBlastX LTR_Gypsy 26775 27125 21 + . . scaffold40476 WUBlastX LTR_Gypsy 26865 27089 104 + . . scaffold40476 WUBlastX LTR_Gypsy 27101 27616 214 + . . scaffold40476 WUBlastX LTR_Gypsy 27515 27739 55 + . . scaffold40476 WUBlastX LTR_Gypsy 27698 28060 23 + . . scaffold40476 WUBlastX LTR_Gypsy 27839 28057 29 + . . scaffold40476 WUBlastX LTR_Pao 27917 28063 40 + . . scaffold40476 WUBlastX LTR_Gypsy 28066 29805 1382 + . . scaffold40476 TRF Tandem_Repeat 32902 32936 61 + . . scaffold40476 TRF Tandem_Repeat 33849 33876 56 + . . scaffold40476 TRF Tandem_Repeat 56357 56420 110 + . . scaffold40476 TRF Tandem_Repeat 63096 63120 50 + . . scaffold40476 GLEAN promoter 85850 86849 0.999885 + . ID=CGI_10004152; scaffold40476 GLEAN mRNA 86850 88366 0.999885 + . ID=CGI_10004152; scaffold40476 TRF Tandem_Repeat 88897 88941 72 + . . scaffold40476 TRF Tandem_Repeat 89146 90068 1393 + . . scaffold40492 WUBlastX DNA_TcMar-Marin 850 948 20 + . . scaffold40492 WUBlastX DNA_TcMar-Tc1 1073 1228 28 + . . scaffold40492 WUBlastX DNA_TcMar-Tc1 1219 2028 234 + . . scaffold40492 WUBlastX DNA_TcMar-Tc1 2039 2104 28 + . . scaffold40492 GLEAN mRNA 5793 9585 1 - . ID=CGI_10004188; scaffold40492 TRF Tandem_Repeat 7471 7500 60 + . . scaffold40492 GLEAN promoter 9586 10585 1 - . ID=CGI_10004188; scaffold40492 WUBlastX DNA_IS4EU 38086 38520 46 - . . scaffold40492 WUBlastX DNA_IS4EU 38095 38463 65 - . . scaffold40492 TRF Tandem_Repeat 40254 40296 86 + . . scaffold40492 WUBlastX LINE_RTE-BovB 44131 44391 91 + . . scaffold40492 WUBlastX LINE_RTE-BovB 44399 44875 59 + . . scaffold40492 WUBlastX LINE_RTE-BovB 44399 44755 168 + . . scaffold40492 WUBlastX LINE_RTE-BovB 44855 44980 26 + . . scaffold40492 WUBlastX LINE_RTE-BovB 44916 45359 131 + . . scaffold40492 WUBlastX LINE_RTE-BovB 45189 45413 31 + . . scaffold40492 WUBlastX LINE_RTE-BovB 45397 45687 53 + . . scaffold40492 WUBlastX LINE_RTE-BovB 45442 45720 115 + . . scaffold40492 WUBlastX LINE_RTE-BovB 45683 45790 44 + . . scaffold40492 WUBlastX LINE_RTE-BovB 45795 46484 376 + . . scaffold40492 WUBlastX LINE_RTE-BovB 46490 46885 155 + . . scaffold40492 WUBlastX LINE_RTE-BovB 46828 46914 34 + . . scaffold40492 TRF Tandem_Repeat 49877 50054 89 + . . scaffold40492 TRF Tandem_Repeat 52394 52571 89 + . . scaffold40492 WUBlastX LINE_L1 88545 89024 282 - . . scaffold40492 WUBlastX LINE_L1-Tx1 89031 89747 363 - . . scaffold40492 WUBlastX LINE_CR1 89747 90139 95 - . . scaffold40492 WUBlastX LINE_CR1 89747 90013 183 - . . scaffold40492 WUBlastX LINE_CR1 89750 90079 175 - . . scaffold40492 WUBlastX LINE_CR1 89759 90247 73 - . . scaffold40492 WUBlastX LINE_CR1-L2 90586 91767 377 - . . scaffold40492 WUBlastX LINE_L2 90649 92007 62 - . . scaffold40492 TRF Tandem_Repeat 92934 92985 104 + . . scaffold40512 WUBlastX DNA_TcMar-Fot1 1826 2242 70 + . . scaffold40512 WUBlastX LTR_Gypsy 8361 9131 555 + . . scaffold40512 WUBlastX LTR_Gypsy 9115 9285 34 + . . scaffold40512 WUBlastX LTR_Gypsy 9166 9282 66 + . . scaffold40512 WUBlastX LTR_Gypsy 11489 11893 107 + . . scaffold40512 TRF Tandem_Repeat 12385 12414 51 + . . scaffold40512 GLEAN promoter 20232 21231 0.998385 + . ID=CGI_10004192; scaffold40512 GLEAN mRNA 21232 31093 0.998385 + . ID=CGI_10004192; scaffold40512 GLEAN promoter 31163 32162 0.783329 + . ID=CGI_10004193; scaffold40512 GLEAN mRNA 32163 58255 0.783329 + . ID=CGI_10004193; scaffold40512 TRF Tandem_Repeat 34650 34699 75 + . . scaffold40512 TRF Tandem_Repeat 36107 37031 1223 + . . scaffold40512 TRF Tandem_Repeat 43477 43569 159 + . . scaffold40512 WUBlastX DNA_IS4EU 50930 51472 91 + . . scaffold40512 WUBlastX DNA_IS4EU 51587 51757 31 + . . scaffold40512 WUBlastX DNA_IS4EU 51632 51919 53 + . . scaffold40512 WUBlastX DNA_IS4EU 52153 52719 189 + . . scaffold40512 WUBlastX DNA_IS4EU 53550 54464 446 - . . scaffold40512 GLEAN mRNA 53892 54428 0.999999 - . ID=CGI_10004194; scaffold40512 GLEAN promoter 54429 55428 0.999999 - . ID=CGI_10004194; scaffold40512 WUBlastX DNA_IS4EU 55327 55611 46 - . . scaffold40512 WUBlastX DNA_Kolobok-IS4 55381 55599 68 - . . scaffold40512 TRF Tandem_Repeat 59438 59641 64 + . . scaffold40512 TRF Tandem_Repeat 59486 59640 98 + . . scaffold40512 TRF Tandem_Repeat 60708 60744 74 + . . scaffold40512 TRF Tandem_Repeat 61698 61724 54 + . . scaffold40512 TRF Tandem_Repeat 78685 78735 102 + . . scaffold40512 TRF Tandem_Repeat 79784 79896 86 + . . scaffold40512 TRF Tandem_Repeat 79784 80012 203 + . . scaffold40512 TRF Tandem_Repeat 79826 79929 61 + . . scaffold40512 WUBlastX DNA_MuDR 90275 90547 59 - . . scaffold40514 GLEAN mRNA 2744 3960 1 - . ID=CGI_10004129; scaffold40514 GLEAN promoter 3961 4960 1 - . ID=CGI_10004129; scaffold40514 TRF Tandem_Repeat 4726 4773 96 + . . scaffold40514 GLEAN promoter 26914 27913 1 + . ID=CGI_10004130; scaffold40514 TRF Tandem_Repeat 27210 27247 58 + . . scaffold40514 GLEAN mRNA 27914 29218 1 + . ID=CGI_10004130; scaffold40514 TRF Tandem_Repeat 29170 29356 338 + . . scaffold40514 GLEAN mRNA 33025 44759 0.997928 - . ID=CGI_10004131; scaffold40514 TRF Tandem_Repeat 37435 37543 134 + . . scaffold40514 TRF Tandem_Repeat 37820 38483 436 + . . scaffold40514 TRF Tandem_Repeat 38496 38897 561 + . . scaffold40514 TRF Tandem_Repeat 38496 38897 566 + . . scaffold40514 TRF Tandem_Repeat 40266 40512 286 + . . scaffold40514 TRF Tandem_Repeat 40699 40804 106 + . . scaffold40514 TRF Tandem_Repeat 42198 42247 86 + . . scaffold40514 TRF Tandem_Repeat 42390 43566 2264 + . . scaffold40514 GLEAN promoter 44760 45759 0.997928 - . ID=CGI_10004131; scaffold40514 GLEAN promoter 48062 49061 1 + . ID=CGI_10004132; scaffold40514 GLEAN mRNA 49062 62430 1 + . ID=CGI_10004132; scaffold40514 TRF Tandem_Repeat 52880 53087 211 + . . scaffold40514 TRF Tandem_Repeat 53253 53787 452 + . . scaffold40514 TRF Tandem_Repeat 53253 53787 405 + . . scaffold40514 TRF Tandem_Repeat 53253 53551 311 + . . scaffold40514 TRF Tandem_Repeat 53558 53745 153 + . . scaffold40514 TRF Tandem_Repeat 55192 56053 1170 + . . scaffold40514 TRF Tandem_Repeat 60862 61260 600 + . . scaffold40514 TRF Tandem_Repeat 60931 61260 574 + . . scaffold40514 GLEAN mRNA 63061 63432 0.999996 - . ID=CGI_10004133; scaffold40514 GLEAN promoter 63433 64432 0.999996 - . ID=CGI_10004133; scaffold40514 TRF Tandem_Repeat 63500 63532 66 + . . scaffold40514 WUBlastX DNA_Crypton 66724 67098 65 + . . scaffold40514 WUBlastX DNA_Crypton 67122 67454 100 + . . scaffold40514 WUBlastX DNA_Crypton 67498 67698 25 + . . scaffold40514 TRF Tandem_Repeat 68174 68241 120 + . . scaffold40514 TRF Tandem_Repeat 68412 68492 135 + . . scaffold40514 GLEAN mRNA 78816 88158 0.983328 - . ID=CGI_10004134; scaffold40514 TRF Tandem_Repeat 82549 82601 106 + . . scaffold40514 GLEAN promoter 88159 89158 0.983328 - . ID=CGI_10004134; scaffold40514 GLEAN mRNA 89873 90244 0.69447 - . ID=CGI_10004135; scaffold40514 GLEAN promoter 90245 91244 0.69447 - . ID=CGI_10004135; scaffold40526 GLEAN promoter 1 278 0.99428 + . ID=CGI_10004195; scaffold40526 GLEAN mRNA 279 1868 0.99428 + . ID=CGI_10004195; scaffold40526 GLEAN promoter 1640 2639 0.999949 + . ID=CGI_10004196; scaffold40526 GLEAN mRNA 2640 20414 0.999949 + . ID=CGI_10004196; scaffold40526 TRF Tandem_Repeat 16667 16707 57 + . . scaffold40526 TRF Tandem_Repeat 18548 18596 73 + . . scaffold40526 TRF Tandem_Repeat 18554 18596 59 + . . scaffold40526 TRF Tandem_Repeat 22344 23057 868 + . . scaffold40526 TRF Tandem_Repeat 25820 25865 76 + . . scaffold40526 WUBlastX LTR_Gypsy 57064 57141 21 - . . scaffold40526 WUBlastX LTR_DIRS 57102 57356 94 - . . scaffold40526 WUBlastX LTR_DIRS 57150 57362 157 - . . scaffold40526 WUBlastX LTR_DIRS 57322 58086 237 - . . scaffold40526 WUBlastX LTR_DIRS 57388 57933 394 - . . scaffold40526 WUBlastX LTR_Gypsy 58299 58484 31 - . . scaffold40526 WUBlastX LTR_DIRS 66930 67298 27 - . . scaffold40526 WUBlastX LTR_DIRS? 67036 67182 88 - . . scaffold40526 WUBlastX LTR_DIRS 67403 67717 54 - . . scaffold40526 WUBlastX LTR_DIRS 68239 68370 24 - . . scaffold40526 WUBlastX LTR_DIRS 68373 68969 178 - . . scaffold40526 WUBlastX DNA_IS4EU 77979 78110 83 + . . scaffold40526 WUBlastX DNA_IS4EU 78613 79986 709 - . . scaffold40526 TRF Tandem_Repeat 89900 90768 729 + . . scaffold40534 GLEAN promoter 1 416 0.991966 + . ID=CGI_10004197; scaffold40534 GLEAN mRNA 417 46942 0.991966 + . ID=CGI_10004197; scaffold40534 GLEAN mRNA 1007 2413 0.999998 - . ID=CGI_10004198; scaffold40534 GLEAN promoter 2414 3413 0.999998 - . ID=CGI_10004198; scaffold40534 GLEAN mRNA 5865 7364 0.999984 - . ID=CGI_10004199; scaffold40534 GLEAN promoter 7365 8364 0.999984 - . ID=CGI_10004199; scaffold40534 GLEAN promoter 48566 49565 0.999647 + . ID=CGI_10004200; scaffold40534 GLEAN mRNA 49566 50266 0.999647 + . ID=CGI_10004200; scaffold40534 GLEAN mRNA 52998 55574 0.994554 - . ID=CGI_10004201; scaffold40534 GLEAN promoter 55575 56574 0.994554 - . ID=CGI_10004201; scaffold40534 GLEAN promoter 64242 65241 0.544657 + . ID=CGI_10004202; scaffold40534 GLEAN mRNA 65242 73199 0.544657 + . ID=CGI_10004202; scaffold40534 GLEAN mRNA 72559 79533 0.718528 - . ID=CGI_10004203; scaffold40534 GLEAN promoter 79534 80533 0.718528 - . ID=CGI_10004203; scaffold40534 GLEAN promoter 83893 84892 1 + . ID=CGI_10004204; scaffold40534 GLEAN mRNA 84893 87524 1 + . ID=CGI_10004204; scaffold40534 GLEAN mRNA 89983 93295 1 - . ID=CGI_10004205; scaffold40534 GLEAN promoter 93296 94234 1 - . ID=CGI_10004205; scaffold40548 GLEAN promoter 4025 5024 0.999547 + . ID=CGI_10004173; scaffold40548 GLEAN mRNA 5025 6483 0.999547 + . ID=CGI_10004173; scaffold40548 GLEAN promoter 6350 7349 0.863786 + . ID=CGI_10004174; scaffold40548 GLEAN mRNA 7350 17682 0.863786 + . ID=CGI_10004174; scaffold40548 GLEAN promoter 21530 22529 1 + . ID=CGI_10004176; scaffold40548 GLEAN mRNA 21668 25294 1 - . ID=CGI_10004175; scaffold40548 GLEAN mRNA 22530 30519 1 + . ID=CGI_10004176; scaffold40548 GLEAN promoter 25295 26294 1 - . ID=CGI_10004175; scaffold40548 TRF Tandem_Repeat 25668 25724 114 + . . scaffold40548 TRF Tandem_Repeat 33183 33232 100 + . . scaffold40548 WUBlastX DNA_hAT-hATw 36155 36796 31 - . . scaffold40548 GLEAN mRNA 40211 54810 0.201528 - . ID=CGI_10004177; scaffold40548 GLEAN promoter 54811 55810 0.201528 - . ID=CGI_10004177; scaffold40548 GLEAN mRNA 60686 67518 1 - . ID=CGI_10004178; scaffold40548 TRF Tandem_Repeat 63407 63660 333 + . . scaffold40548 GLEAN promoter 66844 67843 0.999676 + . ID=CGI_10004179; scaffold40548 GLEAN promoter 67519 68518 1 - . ID=CGI_10004178; scaffold40548 GLEAN mRNA 67844 71520 0.999676 + . ID=CGI_10004179; scaffold40548 GLEAN promoter 73555 74554 1 + . ID=CGI_10004180; scaffold40548 GLEAN mRNA 74555 83058 1 + . ID=CGI_10004180; scaffold40548 GLEAN promoter 84260 85259 1 + . ID=CGI_10004181; scaffold40548 GLEAN mRNA 85260 92817 1 + . ID=CGI_10004181; scaffold40548 TRF Tandem_Repeat 92554 92610 73 + . . scaffold40556 GLEAN mRNA 9810 16493 0.715629 - . ID=CGI_10004250; scaffold40556 WUBlastX LTR_Ngaro 10204 10968 248 - . . scaffold40556 WUBlastX LTR_Ngaro 11214 11372 79 - . . scaffold40556 WUBlastX LTR_Ngaro 11414 11701 87 - . . scaffold40556 WUBlastX LTR_Ngaro 11417 11611 108 - . . scaffold40556 WUBlastX LTR_Ngaro 11614 11856 76 - . . scaffold40556 WUBlastX LTR_Gypsy 12230 12841 170 + . . scaffold40556 WUBlastX LTR_Gypsy 12323 12913 309 + . . scaffold40556 WUBlastX LTR_Gypsy-Cigr 12849 13145 49 + . . scaffold40556 GLEAN promoter 16494 17493 0.715629 - . ID=CGI_10004250; scaffold40556 TRF Tandem_Repeat 18644 18722 158 + . . scaffold40556 GLEAN promoter 24869 25868 0.593391 + . ID=CGI_10004251; scaffold40556 GLEAN mRNA 25869 30695 0.593391 + . ID=CGI_10004251; scaffold40556 TRF Tandem_Repeat 26179 26264 91 + . . scaffold40556 TRF Tandem_Repeat 26329 26465 125 + . . scaffold40556 TRF Tandem_Repeat 26564 26716 189 + . . scaffold40556 TRF Tandem_Repeat 26790 26877 90 + . . scaffold40556 TRF Tandem_Repeat 29861 30074 254 + . . scaffold40556 TRF Tandem_Repeat 32448 32522 141 + . . scaffold40556 TRF Tandem_Repeat 33263 33289 54 + . . scaffold40556 TRF Tandem_Repeat 33567 33632 57 + . . scaffold40556 TRF Tandem_Repeat 35936 35971 72 + . . scaffold40556 TRF Tandem_Repeat 37797 37831 70 + . . scaffold40556 GLEAN mRNA 38636 39784 1 - . ID=CGI_10004252; scaffold40556 GLEAN promoter 39785 40784 1 - . ID=CGI_10004252; scaffold40556 TRF Tandem_Repeat 41096 41124 58 + . . scaffold40556 TRF Tandem_Repeat 46910 46949 80 + . . scaffold40556 TRF Tandem_Repeat 66713 66753 82 + . . scaffold40556 WUBlastX LINE_R2-Hero 80107 80580 59 + . . scaffold40556 WUBlastX LINE_R2-Hero 80851 81366 109 + . . scaffold40556 WUBlastX LINE_R2-Hero 80959 81366 128 + . . scaffold40556 WUBlastX LINE_R2-Hero 81359 81550 28 + . . scaffold40556 WUBlastX LINE_R2-Hero 81365 81520 37 + . . scaffold40556 WUBlastX LTR_Copia 84491 84622 28 - . . scaffold40556 WUBlastX LTR_Gypsy 84534 85826 969 - . . scaffold40556 GLEAN mRNA 88418 88975 0.618241 - . ID=CGI_10004254; scaffold40556 WUBlastX LTR_Gypsy 88583 89074 37 - . . scaffold40556 WUBlastX LTR_Gypsy 88739 89080 64 - . . scaffold40556 GLEAN promoter 88976 89975 0.618241 - . ID=CGI_10004254; scaffold40560 TRF Tandem_Repeat 15031 15121 146 + . . scaffold40560 TRF Tandem_Repeat 15087 15176 90 + . . scaffold40560 TRF Tandem_Repeat 16625 16731 106 + . . scaffold40560 TRF Tandem_Repeat 27940 27987 51 + . . scaffold40560 WUBlastX LINE_L1-Tx1 33755 34243 137 - . . scaffold40560 WUBlastX LINE_L1-Tx1 34281 35423 263 - . . scaffold40560 WUBlastX LINE_L1 35416 35562 47 - . . scaffold40560 WUBlastX LINE_L1-Tx1 35464 35562 61 - . . scaffold40560 WUBlastX LINE_L1 35488 35679 29 - . . scaffold40560 WUBlastX LINE_L1 35973 36020 24 - . . scaffold40560 GLEAN mRNA 41881 51219 0.999218 - . ID=CGI_10004229; scaffold40560 TRF Tandem_Repeat 45605 45674 140 + . . scaffold40560 GLEAN promoter 51220 52219 0.999218 - . ID=CGI_10004229; scaffold40560 GLEAN mRNA 52941 60910 0.709835 - . ID=CGI_10004230; scaffold40560 WUBlastX DNA_Harbinger 55649 55960 86 + . . scaffold40560 WUBlastX DNA_Harbinger 56261 56407 45 + . . scaffold40560 WUBlastX DNA_Harbinger 56407 56529 63 + . . scaffold40560 WUBlastX DNA_Harbinger 56407 56508 79 + . . scaffold40560 WUBlastX DNA_Harbinger 57072 57326 190 + . . scaffold40560 WUBlastX DNA_Harbinger 58070 58294 47 + . . scaffold40560 TRF Tandem_Repeat 58493 58538 92 + . . scaffold40560 WUBlastX DNA_Harbinger 59483 59593 67 - . . scaffold40560 TRF Tandem_Repeat 60461 60491 55 + . . scaffold40560 WUBlastX DNA_Harbinger 60566 60706 58 - . . scaffold40560 WUBlastX DNA_Harbinger 60566 60757 39 - . . scaffold40560 GLEAN promoter 60911 61910 0.709835 - . ID=CGI_10004230; scaffold40560 GLEAN mRNA 68491 71739 0.648556 - . ID=CGI_10004231; scaffold40560 GLEAN promoter 71740 72739 0.648556 - . ID=CGI_10004231; scaffold40564 GLEAN promoter 1 530 0.983455 + . ID=CGI_10004206; scaffold40564 GLEAN mRNA 531 6175 0.983455 + . ID=CGI_10004206; scaffold40564 WUBlastX DNA_Harbinger 4889 5140 76 + . . scaffold40564 GLEAN promoter 5674 6673 0.488599 + . ID=CGI_10004207; scaffold40564 WUBlastX LINE_CR1 6397 6636 81 + . . scaffold40564 GLEAN mRNA 6674 28756 0.488599 + . ID=CGI_10004207; scaffold40564 WUBlastX LINE_L1-Tx1 7416 7808 78 + . . scaffold40564 WUBlastX LINE_L1 8342 8851 34 + . . scaffold40564 WUBlastX LINE_L1 8514 9380 222 + . . scaffold40564 WUBlastX LINE_L1 8889 9605 184 + . . scaffold40564 TRF Tandem_Repeat 9689 9752 58 + . . scaffold40564 WUBlastX LINE_DRE 10046 10123 23 + . . scaffold40564 TRF Tandem_Repeat 22935 22985 102 + . . scaffold40564 TRF Tandem_Repeat 29037 29080 88 + . . scaffold40564 WUBlastX LINE_RTE-X 29321 29557 22 - . . scaffold40564 WUBlastX LINE_RTE-X 29402 29560 32 - . . scaffold40564 WUBlastX LINE_RTE-X 29429 29560 51 - . . scaffold40564 WUBlastX LINE_RTE-X 29560 29883 45 - . . scaffold40564 TRF Tandem_Repeat 33608 33643 63 + . . scaffold40564 GLEAN mRNA 33897 48843 0.908957 - . ID=CGI_10004208; scaffold40564 TRF Tandem_Repeat 34682 34730 98 + . . scaffold40564 TRF Tandem_Repeat 46309 46402 84 + . . scaffold40564 GLEAN promoter 48844 49843 0.908957 - . ID=CGI_10004208; scaffold40564 GLEAN mRNA 54007 76572 0.999674 - . ID=CGI_10004209; scaffold40564 TRF Tandem_Repeat 65907 65956 100 + . . scaffold40564 TRF Tandem_Repeat 66012 66063 104 + . . scaffold40564 GLEAN promoter 76573 77572 0.999674 - . ID=CGI_10004209; scaffold40564 GLEAN mRNA 77232 85821 0.816856 - . ID=CGI_10004210; scaffold40564 GLEAN promoter 85822 86821 0.816856 - . ID=CGI_10004210; scaffold40584 TRF Tandem_Repeat 15645 15696 59 + . . scaffold40584 TRF Tandem_Repeat 15726 16686 1441 + . . scaffold40584 GLEAN promoter 16012 17011 0.865249 + . ID=CGI_10004248; scaffold40584 GLEAN mRNA 17012 23012 0.865249 + . ID=CGI_10004248; scaffold40584 TRF Tandem_Repeat 30422 31290 1047 + . . scaffold40584 TRF Tandem_Repeat 31497 31537 55 + . . scaffold40584 WUBlastX DNA_Kolobok-IS4 34404 34952 132 + . . scaffold40584 WUBlastX DNA_IS4EU 34590 34955 205 + . . scaffold40584 WUBlastX DNA_IS4EU 35449 35904 106 - . . scaffold40584 WUBlastX DNA_IS4EU 35473 36069 73 - . . scaffold40584 TRF Tandem_Repeat 38241 38272 55 + . . scaffold40584 GLEAN promoter 38320 39319 0.702301 + . ID=CGI_10004249; scaffold40584 TRF Tandem_Repeat 38410 39129 848 + . . scaffold40584 GLEAN mRNA 39320 59449 0.702301 + . ID=CGI_10004249; scaffold40584 TRF Tandem_Repeat 40060 40305 77 + . . scaffold40584 WUBlastX LINE_CR1 58430 58894 133 + . . scaffold40584 WUBlastX LINE_L1-Tx1 58457 59029 129 + . . scaffold40584 WUBlastX LINE_L1-Tx1 59485 59679 88 + . . scaffold40584 TRF Tandem_Repeat 80263 80307 81 + . . scaffold40584 TRF Tandem_Repeat 93502 94643 1896 + . . scaffold40586 TRF Tandem_Repeat 5865 6378 612 + . . scaffold40586 WUBlastX DNA_Crypton 9850 10347 77 - . . scaffold40586 WUBlastX DNA_Crypton 10566 10631 22 - . . scaffold40586 WUBlastX DNA_Crypton 10757 11413 230 - . . scaffold40586 TRF Tandem_Repeat 18476 18521 92 + . . scaffold40586 TRF Tandem_Repeat 18584 18926 242 + . . scaffold40586 GLEAN mRNA 31849 33242 1 - . ID=CGI_10004238; scaffold40586 GLEAN promoter 33243 34242 1 - . ID=CGI_10004238; scaffold40586 WUBlastX LINE_I 34394 34648 30 + . . scaffold40586 WUBlastX LINE_RTE-BovB 34475 34648 233 + . . scaffold40586 WUBlastX LINE_RTE-BovB 34641 34781 151 + . . scaffold40586 WUBlastX LINE_RTE-BovB 34779 34904 90 + . . scaffold40586 WUBlastX LINE_CR1 35135 35206 22 + . . scaffold40586 WUBlastX LTR_DIRS 35813 36220 79 - . . scaffold40586 WUBlastX LTR_Gypsy 37828 38085 22 + . . scaffold40586 WUBlastX LTR_Gypsy-Cigr 37876 38421 158 + . . scaffold40586 WUBlastX LTR_Gypsy 38818 40419 906 + . . scaffold40586 WUBlastX LTR_Gypsy 39127 40386 1101 + . . scaffold40586 WUBlastX LTR_Gypsy 40627 40653 23 + . . scaffold40586 TRF Tandem_Repeat 41857 42061 356 + . . scaffold40586 TRF Tandem_Repeat 41889 42052 82 + . . scaffold40586 WUBlastX LINE_RTE-X 51144 51242 31 - . . scaffold40586 WUBlastX LINE_L2 51309 51689 42 + . . scaffold40586 WUBlastX LINE_RTE-X 51309 51575 82 + . . scaffold40586 WUBlastX LINE_RTE-X 51309 51506 92 + . . scaffold40586 WUBlastX LINE_L1-Tx1 55109 55831 84 - . . scaffold40586 WUBlastX LINE_L1-Tx1 55490 55891 88 - . . scaffold40586 WUBlastX LINE_L1 55532 55870 123 - . . scaffold40586 WUBlastX LINE_L1 55975 56853 286 - . . scaffold40586 WUBlastX LINE_L1-Tx1 55990 57036 254 - . . scaffold40586 WUBlastX LINE_RTE-X 57100 57207 27 + . . scaffold40586 WUBlastX LINE_RTE-X 57171 57464 123 + . . scaffold40586 WUBlastX LINE_RTE-X 57216 57464 139 + . . scaffold40586 WUBlastX LINE_RTE-X 57216 57737 50 + . . scaffold40586 WUBlastX LINE_RTE-X 57219 57566 97 + . . scaffold40586 WUBlastX LINE_RTE-X 57646 57825 42 + . . scaffold40586 WUBlastX LINE_RTE-X 57646 57867 27 + . . scaffold40586 WUBlastX LINE_RTE-X 58396 58884 206 + . . scaffold40586 WUBlastX LINE_RTE-X 58417 58824 258 + . . scaffold40586 WUBlastX LINE_RTE-X 58826 59074 147 + . . scaffold40586 WUBlastX LINE_RTE-X 58932 59579 217 + . . scaffold40586 WUBlastX LINE_RTE-X 59061 60338 479 + . . scaffold40586 WUBlastX LINE_RTE-X 90018 90230 56 + . . scaffold40586 WUBlastX LINE_RTE-X 90227 90547 99 + . . scaffold40586 WUBlastX LINE_RTE-X 90983 91126 32 + . . scaffold40586 WUBlastX LINE_RTE-X 91213 91371 23 + . . scaffold40586 WUBlastX LINE_RTE-X 91446 91577 60 + . . scaffold40586 WUBlastX LINE_RTE-X 91452 91637 38 + . . scaffold40586 GLEAN promoter 91686 92685 1 + . ID=CGI_10004239; scaffold40586 TRF Tandem_Repeat 92514 92562 98 + . . scaffold40586 GLEAN mRNA 92686 93466 1 + . ID=CGI_10004239; scaffold40586 WUBlastX LINE_RTE-X 94620 94907 104 + . . scaffold40598 GLEAN mRNA 11098 12519 0.794507 - . ID=CGI_10004246; scaffold40598 GLEAN promoter 12520 13519 0.794507 - . ID=CGI_10004246; scaffold40598 TRF Tandem_Repeat 14244 15643 1489 + . . scaffold40598 TRF Tandem_Repeat 14244 15643 1719 + . . scaffold40598 WUBlastX DNA_Sola 53169 53330 67 + . . scaffold40598 GLEAN mRNA 82409 90181 0.999395 - . ID=CGI_10004247; scaffold40598 GLEAN promoter 90182 91181 0.999395 - . ID=CGI_10004247; scaffold40598 TRF Tandem_Repeat 93975 94034 84 + . . scaffold406 GLEAN promoter 8707 9706 0.989974 + . ID=CGI_10023838; scaffold406 GLEAN mRNA 9707 32461 0.989974 + . ID=CGI_10023838; scaffold406 TRF Tandem_Repeat 11652 11745 118 + . . scaffold406 TRF Tandem_Repeat 12136 12186 66 + . . scaffold406 TRF Tandem_Repeat 13302 13387 97 + . . scaffold406 TRF Tandem_Repeat 19400 19431 64 + . . scaffold406 TRF Tandem_Repeat 30774 30838 121 + . . scaffold406 WUBlastX LTR_DIRS 34112 34399 184 + . . scaffold406 WUBlastX LTR_DIRS 34139 34378 189 + . . scaffold406 WUBlastX LTR_DIRS 34381 34530 39 + . . scaffold406 TRF Tandem_Repeat 37630 37663 52 + . . scaffold406 TRF Tandem_Repeat 46535 46579 67 + . . scaffold406 TRF Tandem_Repeat 57716 57765 100 + . . scaffold406 TRF Tandem_Repeat 62362 62409 96 + . . scaffold406 GLEAN mRNA 63105 78647 0.760341 - . ID=CGI_10023839; scaffold406 WUBlastX LTR_Gypsy 63254 63901 207 - . . scaffold406 WUBlastX LTR_Gypsy 63392 63904 503 - . . scaffold406 WUBlastX LTR_Gypsy-Cigr 63897 64007 76 - . . scaffold406 WUBlastX LTR_Gypsy 63900 64070 58 - . . scaffold406 WUBlastX LTR_Gypsy 63912 64025 61 - . . scaffold406 WUBlastX LTR_Gypsy 63946 64110 49 - . . scaffold406 WUBlastX LTR_Gypsy 64012 64128 42 - . . scaffold406 WUBlastX LTR_Gypsy 64021 64149 29 - . . scaffold406 WUBlastX LTR_Gypsy 69609 70073 47 - . . scaffold406 WUBlastX LTR_Gypsy 69609 69980 155 - . . scaffold406 WUBlastX LINE_L1-Tx1 70153 70905 486 + . . scaffold406 TRF Tandem_Repeat 77367 77470 154 + . . scaffold406 GLEAN promoter 78648 79647 0.760341 - . ID=CGI_10023839; scaffold406 TRF Tandem_Repeat 86797 86822 52 + . . scaffold406 WUBlastX LINE_L1 89674 89751 21 - . . scaffold406 WUBlastX LINE_L1-Tx1 89873 91813 1055 - . . scaffold406 WUBlastX LINE_L1-Tx1 89879 92215 705 - . . scaffold406 WUBlastX LINE_L1-Tx1 92239 92871 256 - . . scaffold406 WUBlastX LINE_L1 92823 93110 29 - . . scaffold406 WUBlastX LINE_L1-Tx1 92832 93065 131 - . . scaffold406 WUBlastX LINE_RTE-X 94026 94175 67 - . . scaffold406 TRF Tandem_Repeat 108150 108216 71 + . . scaffold406 WUBlastX LINE_CR1 117327 117446 26 + . . scaffold406 WUBlastX LINE_L2 117590 118615 501 + . . scaffold406 WUBlastX LINE_L2 118595 118693 20 + . . scaffold406 WUBlastX LINE_RTE-X 121946 122242 170 + . . scaffold406 WUBlastX LINE_RTE-X 122285 123454 596 + . . scaffold406 WUBlastX LINE_RTE-X 123451 124605 718 + . . scaffold406 WUBlastX LINE_RTE-X 124835 125674 345 + . . scaffold406 WUBlastX LINE_RTE-X 125415 125771 56 + . . scaffold406 GLEAN mRNA 128241 151323 0.854188 - . ID=CGI_10023840; scaffold406 TRF Tandem_Repeat 131866 131961 111 + . . scaffold406 WUBlastX LTR_Gypsy-Cigr 132527 132640 44 + . . scaffold406 WUBlastX LTR_Gypsy-Cigr 132613 133956 104 + . . scaffold406 WUBlastX LTR_Gypsy 133968 134033 21 + . . scaffold406 WUBlastX LTR_Gypsy 133980 134405 85 + . . scaffold406 WUBlastX LTR_Gypsy-Cigr 134178 134408 104 + . . scaffold406 WUBlastX LTR_Gypsy 134378 134572 120 + . . scaffold406 WUBlastX LTR_Gypsy-Cigr 134423 135502 508 + . . scaffold406 WUBlastX LTR_Gypsy 135492 136523 586 + . . scaffold406 WUBlastX LTR_Gypsy 135876 136718 266 + . . scaffold406 WUBlastX LTR_Gypsy-Cigr 136517 137059 187 + . . scaffold406 WUBlastX LTR_Gypsy 136523 137239 74 + . . scaffold406 TRF Tandem_Repeat 144143 144216 148 + . . scaffold406 TRF Tandem_Repeat 148031 148065 70 + . . scaffold406 TRF Tandem_Repeat 148063 148093 62 + . . scaffold406 GLEAN promoter 151324 152323 0.854188 - . ID=CGI_10023840; scaffold406 WUBlastX DNA_TcMar-Tc1 152662 153687 328 + . . scaffold406 WUBlastX DNA_TcMar-Tc1 152662 153531 337 + . . scaffold406 WUBlastX DNA_hAT-Ac 159399 159515 51 + . . scaffold406 WUBlastX DNA_hAT-Ac 159795 160052 69 + . . scaffold406 WUBlastX DNA_hAT-Ac 160208 160378 24 + . . scaffold406 WUBlastX DNA_hAT-Ac 160235 160378 33 + . . scaffold406 WUBlastX DNA_hAT-Ac 160345 160470 54 + . . scaffold406 WUBlastX DNA_hAT-Ac 160467 160886 198 + . . scaffold406 WUBlastX DNA_hAT-Ac 160782 160931 21 + . . scaffold406 WUBlastX DNA_hAT-Ac 160919 161653 190 + . . scaffold406 WUBlastX DNA_hAT-hATx 161787 162086 50 + . . scaffold406 WUBlastX DNA_hAT-Ac 161865 162062 75 + . . scaffold406 WUBlastX DNA_hAT-Ac 161901 162086 136 + . . scaffold406 WUBlastX DNA_hAT-Ac 161919 162119 77 + . . scaffold406 WUBlastX LINE_L1-Tx1 165705 165992 99 - . . scaffold406 WUBlastX LINE_L1-Tx1 165708 166106 78 - . . scaffold406 WUBlastX RC_Helitron 167429 167938 216 - . . scaffold406 WUBlastX RC_Helitron 167537 167947 325 - . . scaffold406 WUBlastX RC_Helitron 167985 168269 175 - . . scaffold406 WUBlastX RC_Helitron 169170 169328 25 - . . scaffold406 WUBlastX RC_Helitron 169185 169304 27 - . . scaffold406 WUBlastX RC_Helitron 169325 169444 61 - . . scaffold406 WUBlastX DNA_IS4EU 172815 173627 106 + . . scaffold406 WUBlastX DNA_IS4EU 173633 173905 209 + . . scaffold406 WUBlastX DNA_IS4EU 173979 174107 73 + . . scaffold406 WUBlastX DNA_IS4EU 174893 175918 117 - . . scaffold406 WUBlastX DNA_Kolobok-IS4 175130 175915 181 - . . scaffold406 TRF Tandem_Repeat 178475 179238 1021 + . . scaffold406 TRF Tandem_Repeat 179721 179762 77 + . . scaffold406 WUBlastX LTR_Gypsy 179780 180433 370 + . . scaffold406 WUBlastX LTR_Gypsy 180323 181393 81 + . . scaffold406 WUBlastX LTR_Gypsy 180392 181018 540 + . . scaffold406 WUBlastX LTR_Gypsy 180398 181213 524 + . . scaffold406 WUBlastX LTR_Gypsy 181425 181982 153 + . . scaffold406 WUBlastX LTR_Gypsy 187811 191017 2348 + . . scaffold406 TRF Tandem_Repeat 202226 202301 143 + . . scaffold406 TRF Tandem_Repeat 202364 202402 78 + . . scaffold406 TRF Tandem_Repeat 203170 203557 562 + . . scaffold406 TRF Tandem_Repeat 203674 203760 106 + . . scaffold406 TRF Tandem_Repeat 203675 203789 93 + . . scaffold406 TRF Tandem_Repeat 204922 204957 72 + . . scaffold406 GLEAN mRNA 218302 220384 0.999997 - . ID=CGI_10023841; scaffold406 GLEAN promoter 220385 221384 0.999997 - . ID=CGI_10023841; scaffold406 TRF Tandem_Repeat 220633 220672 80 + . . scaffold406 TRF Tandem_Repeat 220735 220789 110 + . . scaffold406 TRF Tandem_Repeat 221611 221641 62 + . . scaffold406 TRF Tandem_Repeat 222357 222398 84 + . . scaffold406 TRF Tandem_Repeat 222502 222570 129 + . . scaffold406 TRF Tandem_Repeat 223464 223509 92 + . . scaffold406 TRF Tandem_Repeat 228168 228221 101 + . . scaffold406 TRF Tandem_Repeat 228318 228412 124 + . . scaffold406 WUBlastX LINE_RTE-X 235363 236100 346 + . . scaffold406 WUBlastX LINE_RTE-X 235951 236139 37 + . . scaffold406 TRF Tandem_Repeat 257748 257779 55 + . . scaffold406 WUBlastX DNA_TcMar-Tc1 270367 270729 64 + . . scaffold406 WUBlastX DNA_TcMar-Tc1 270818 271027 150 + . . scaffold406 GLEAN mRNA 272645 274312 1 - . ID=CGI_10023842; scaffold406 GLEAN promoter 274313 275312 1 - . ID=CGI_10023842; scaffold406 TRF Tandem_Repeat 274522 274573 77 + . . scaffold406 TRF Tandem_Repeat 277010 277041 64 + . . scaffold406 TRF Tandem_Repeat 279043 279097 110 + . . scaffold406 TRF Tandem_Repeat 280932 280956 50 + . . scaffold406 TRF Tandem_Repeat 281064 281103 53 + . . scaffold406 TRF Tandem_Repeat 281591 281634 88 + . . scaffold406 TRF Tandem_Repeat 285345 285411 134 + . . scaffold406 TRF Tandem_Repeat 287774 288039 306 + . . scaffold406 TRF Tandem_Repeat 287776 288021 256 + . . scaffold406 TRF Tandem_Repeat 287884 287965 58 + . . scaffold406 TRF Tandem_Repeat 296294 296347 99 + . . scaffold406 WUBlastX LTR_Gypsy 299388 300017 282 - . . scaffold406 WUBlastX LTR_Gypsy 299882 300568 57 - . . scaffold406 TRF Tandem_Repeat 303610 303677 136 + . . scaffold406 TRF Tandem_Repeat 305197 305319 167 + . . scaffold406 TRF Tandem_Repeat 305207 305335 87 + . . scaffold406 TRF Tandem_Repeat 310326 310380 76 + . . scaffold406 TRF Tandem_Repeat 310331 310422 55 + . . scaffold406 TRF Tandem_Repeat 310412 310440 58 + . . scaffold406 WUBlastX LINE_L1 318256 318480 23 + . . scaffold406 WUBlastX LINE_L1 318358 318483 49 + . . scaffold406 WUBlastX LINE_L1 318388 318480 56 + . . scaffold406 WUBlastX LINE_L1 318498 319232 61 + . . scaffold406 WUBlastX LINE_L1-Tx1 318510 319070 251 + . . scaffold406 WUBlastX LINE_L1-Tx1 320346 320822 59 + . . scaffold406 WUBlastX LINE_L1-Tx1 320349 320738 108 + . . scaffold406 WUBlastX LINE_RTE-X 322467 322610 46 - . . scaffold406 TRF Tandem_Repeat 335470 335500 62 + . . scaffold406 TRF Tandem_Repeat 339497 339551 94 + . . scaffold406 TRF Tandem_Repeat 342832 343185 142 + . . scaffold406 TRF Tandem_Repeat 347244 348359 1245 + . . scaffold406 GLEAN promoter 350742 351741 0.406925 + . ID=CGI_10023843; scaffold406 TRF Tandem_Repeat 351047 351080 68 + . . scaffold406 GLEAN mRNA 351742 352809 0.406925 + . ID=CGI_10023843; scaffold406 GLEAN promoter 357035 358034 0.999854 + . ID=CGI_10023844; scaffold406 GLEAN mRNA 358035 359357 0.999854 + . ID=CGI_10023844; scaffold406 GLEAN promoter 359198 360197 1 + . ID=CGI_10023845; scaffold406 GLEAN mRNA 360198 361665 1 + . ID=CGI_10023845; scaffold406 TRF Tandem_Repeat 362031 362085 92 + . . scaffold406 WUBlastX LINE_L1-Tx1 368510 369193 98 + . . scaffold406 WUBlastX LINE_L1-Tx1 368672 370162 408 + . . scaffold406 GLEAN promoter 373338 374337 0.990609 + . ID=CGI_10023846; scaffold406 GLEAN mRNA 374338 376248 0.990609 + . ID=CGI_10023846; scaffold406 WUBlastX DNA_Kolobok 376002 376181 28 + . . scaffold406 WUBlastX DNA_Kolobok 376364 376510 51 + . . scaffold406 WUBlastX DNA_Kolobok 376388 376516 81 + . . scaffold406 WUBlastX DNA_Kolobok 376811 377059 88 - . . scaffold406 WUBlastX DNA_Kolobok 377054 377245 66 - . . scaffold406 WUBlastX DNA_Kolobok 377084 377236 88 - . . scaffold406 WUBlastX DNA_Kolobok 377486 377836 58 - . . scaffold406 WUBlastX DNA_Kolobok 377543 377812 75 - . . scaffold406 WUBlastX DNA_Kolobok 377573 377923 67 - . . scaffold406 WUBlastX DNA_Kolobok 377600 377836 89 - . . scaffold406 WUBlastX DNA_Kolobok 377971 378159 99 - . . scaffold406 WUBlastX DNA_Kolobok 377971 378198 53 - . . scaffold406 WUBlastX DNA_Kolobok 378273 378968 232 - . . scaffold406 WUBlastX DNA_Kolobok 379937 380224 22 - . . scaffold406 WUBlastX DNA_hAT-Tip100 379991 380356 100 - . . scaffold406 TRF Tandem_Repeat 384465 384550 68 + . . scaffold406 TRF Tandem_Repeat 393248 393302 101 + . . scaffold406 TRF Tandem_Repeat 396051 396102 104 + . . scaffold406 GLEAN promoter 401781 402780 0.999901 + . ID=CGI_10023847; scaffold406 GLEAN mRNA 402781 436007 0.999901 + . ID=CGI_10023847; scaffold406 TRF Tandem_Repeat 403628 404235 1180 + . . scaffold406 TRF Tandem_Repeat 406041 406088 51 + . . scaffold406 TRF Tandem_Repeat 406473 406532 66 + . . scaffold406 TRF Tandem_Repeat 406480 406538 64 + . . scaffold406 TRF Tandem_Repeat 409698 409736 78 + . . scaffold406 WUBlastX DNA_MuDR 413829 414755 307 - . . scaffold406 WUBlastX DNA_MuDR 413964 415016 190 - . . scaffold406 TRF Tandem_Repeat 415111 415332 342 + . . scaffold406 TRF Tandem_Repeat 418511 419830 1814 + . . scaffold406 WUBlastX LINE_RTE-X 421815 422372 104 + . . scaffold406 TRF Tandem_Repeat 422728 422763 72 + . . scaffold406 TRF Tandem_Repeat 424555 424590 72 + . . scaffold406 GLEAN mRNA 426155 427982 0.999196 - . ID=CGI_10023848; scaffold406 GLEAN promoter 427983 428982 0.999196 - . ID=CGI_10023848; scaffold406 GLEAN mRNA 439233 440123 1 - . ID=CGI_10023849; scaffold406 GLEAN promoter 440124 441123 1 - . ID=CGI_10023849; scaffold406 WUBlastX LINE_L2 440569 441000 62 + . . scaffold406 WUBlastX LINE_L2 440653 441078 261 + . . scaffold406 WUBlastX LINE_L2 440710 441252 50 + . . scaffold406 WUBlastX LINE_CR1-L2 440725 441159 189 + . . scaffold406 WUBlastX LINE_CR1-L2 447827 448234 87 - . . scaffold406 WUBlastX LINE_CR1-L2 448195 449955 984 - . . scaffold406 WUBlastX LINE_I 450477 450569 24 - . . scaffold406 WUBlastX DNA_IS4EU 452386 452520 61 + . . scaffold406 WUBlastX DNA_P 452860 452952 46 + . . scaffold406 WUBlastX DNA_IS4EU 453070 453177 47 - . . scaffold406 WUBlastX DNA_IS4EU 453618 453824 33 - . . scaffold406 TRF Tandem_Repeat 456361 456404 52 + . . scaffold406 GLEAN mRNA 460772 463330 0.593383 - . ID=CGI_10023850; scaffold406 GLEAN promoter 463331 464330 0.593383 - . ID=CGI_10023850; scaffold406 GLEAN promoter 463569 464568 0.850241 + . ID=CGI_10023851; scaffold406 GLEAN mRNA 464569 466624 0.850241 + . ID=CGI_10023851; scaffold406 WUBlastX LINE_RTE-X 469828 470277 42 - . . scaffold406 TRF Tandem_Repeat 471427 471505 158 + . . scaffold406 TRF Tandem_Repeat 472482 472556 150 + . . scaffold406 GLEAN mRNA 476677 486370 0.990506 - . ID=CGI_10023852; scaffold406 GLEAN promoter 486371 487370 0.990506 - . ID=CGI_10023852; scaffold406 TRF Tandem_Repeat 498947 499008 124 + . . scaffold406 GLEAN mRNA 507516 509634 1 - . ID=CGI_10023853; scaffold406 GLEAN promoter 509635 510634 1 - . ID=CGI_10023853; scaffold406 GLEAN promoter 516063 517062 0.999184 + . ID=CGI_10023854; scaffold406 GLEAN mRNA 517063 520785 0.999184 + . ID=CGI_10023854; scaffold406 TRF Tandem_Repeat 519535 519585 102 + . . scaffold406 TRF Tandem_Repeat 523312 523360 89 + . . scaffold406 GLEAN mRNA 528097 530436 1 - . ID=CGI_10023855; scaffold406 GLEAN promoter 530437 531436 1 - . ID=CGI_10023855; scaffold406 GLEAN mRNA 538114 544591 0.999676 - . ID=CGI_10023856; scaffold406 GLEAN promoter 544592 545591 0.999676 - . ID=CGI_10023856; scaffold406 GLEAN promoter 549237 550236 1 + . ID=CGI_10023857; scaffold406 GLEAN mRNA 550237 553560 1 + . ID=CGI_10023857; scaffold406 TRF Tandem_Repeat 561983 562256 349 + . . scaffold406 TRF Tandem_Repeat 564192 564236 72 + . . scaffold406 TRF Tandem_Repeat 564495 564522 56 + . . scaffold406 TRF Tandem_Repeat 568757 568885 135 + . . scaffold406 TRF Tandem_Repeat 568757 568885 175 + . . scaffold406 TRF Tandem_Repeat 569132 569183 104 + . . scaffold406 TRF Tandem_Repeat 570088 570117 60 + . . scaffold406 TRF Tandem_Repeat 570361 570491 126 + . . scaffold406 TRF Tandem_Repeat 570361 570491 148 + . . scaffold406 GLEAN mRNA 570656 571126 0.467972 - . ID=CGI_10023858; scaffold406 GLEAN promoter 571127 572126 0.467972 - . ID=CGI_10023858; scaffold406 TRF Tandem_Repeat 574000 574221 259 + . . scaffold406 WUBlastX LTR_Gypsy 574396 574626 141 - . . scaffold406 WUBlastX LTR_Gypsy-Cigr 574468 575061 78 - . . scaffold406 WUBlastX LTR_Gypsy 574629 574847 164 - . . scaffold406 WUBlastX LTR_Gypsy 574629 574895 132 - . . scaffold406 WUBlastX LTR_Gypsy 574867 575151 21 - . . scaffold406 GLEAN mRNA 577509 577850 0.55465 - . ID=CGI_10023859; scaffold406 WUBlastX DNA_hAT-Blackja 577524 577583 29 - . . scaffold406 GLEAN promoter 577851 578850 0.55465 - . ID=CGI_10023859; scaffold406 WUBlastX DNA_hAT-Blackja 577929 578015 30 - . . scaffold406 WUBlastX DNA_TcMar-Pogo 580885 582315 782 - . . scaffold406 WUBlastX DNA_Harbinger 585135 585290 92 - . . scaffold406 WUBlastX LINE_Tad1? 587335 587580 31 + . . scaffold406 GLEAN promoter 589744 590743 0.618077 + . ID=CGI_10023860; scaffold406 GLEAN mRNA 590744 590929 0.618077 + . ID=CGI_10023860; scaffold406 TRF Tandem_Repeat 596288 596523 151 + . . scaffold406 TRF Tandem_Repeat 597082 597175 125 + . . scaffold406 TRF Tandem_Repeat 601701 601752 95 + . . scaffold406 GLEAN mRNA 608367 608735 0.968462 - . ID=CGI_10023861; scaffold406 GLEAN promoter 608736 609735 0.968462 - . ID=CGI_10023861; scaffold406 TRF Tandem_Repeat 614845 615528 953 + . . scaffold406 TRF Tandem_Repeat 640247 640827 869 + . . scaffold406 GLEAN promoter 640839 641838 1 + . ID=CGI_10023862; scaffold406 TRF Tandem_Repeat 640847 642616 2322 + . . scaffold406 GLEAN mRNA 641839 642720 1 + . ID=CGI_10023862; scaffold406 WUBlastX LTR_DIRS? 654067 654399 249 + . . scaffold406 GLEAN mRNA 655350 661419 0.999999 - . ID=CGI_10023863; scaffold406 GLEAN promoter 655632 656631 0.999372 + . ID=CGI_10023864; scaffold406 GLEAN mRNA 656632 656811 0.999372 + . ID=CGI_10023864; scaffold406 GLEAN promoter 661420 662419 0.999999 - . ID=CGI_10023863; scaffold406 WUBlastX DNA_TcMar-ISRm1 662302 662565 90 - . . scaffold406 WUBlastX DNA_TcMar-IS630 662323 662709 67 - . . scaffold406 GLEAN mRNA 664336 664629 0.776794 - . ID=CGI_10023865; scaffold406 WUBlastX DNA_TcMar-ISRm1 664369 664932 55 - . . scaffold406 GLEAN promoter 664630 665629 0.776794 - . ID=CGI_10023865; scaffold406 GLEAN promoter 667831 668830 0.451437 + . ID=CGI_10023866; scaffold406 GLEAN mRNA 668831 676081 0.451437 + . ID=CGI_10023866; scaffold406 TRF Tandem_Repeat 669220 669267 96 + . . scaffold406 WUBlastX LTR_Gypsy 676826 677065 77 - . . scaffold406 TRF Tandem_Repeat 679663 681323 2108 + . . scaffold406 TRF Tandem_Repeat 679663 681510 2356 + . . scaffold406 WUBlastX LINE_L1-Tx1 682576 685920 1518 + . . scaffold406 WUBlastX LINE_L1 685901 686065 28 + . . scaffold406 WUBlastX LINE_L1-Tx1 685952 686290 66 + . . scaffold406 WUBlastX LINE_L1-Tx1 685952 686188 70 + . . scaffold406 TRF Tandem_Repeat 686467 686528 110 + . . scaffold406 GLEAN mRNA 690195 692189 0.998232 - . ID=CGI_10023867; scaffold406 TRF Tandem_Repeat 690542 690601 93 + . . scaffold406 TRF Tandem_Repeat 690628 691752 1575 + . . scaffold406 GLEAN promoter 692190 693189 0.998232 - . ID=CGI_10023867; scaffold406 TRF Tandem_Repeat 693369 693415 60 + . . scaffold406 TRF Tandem_Repeat 693370 693419 75 + . . scaffold406 TRF Tandem_Repeat 693446 694240 1128 + . . scaffold406 TRF Tandem_Repeat 694666 694806 129 + . . scaffold406 GLEAN promoter 695367 696366 0.999708 + . ID=CGI_10023868; scaffold406 TRF Tandem_Repeat 695762 695890 109 + . . scaffold406 GLEAN mRNA 696367 703528 0.999708 + . ID=CGI_10023868; scaffold406 WUBlastX LTR_Copia 707942 708295 60 + . . scaffold406 TRF Tandem_Repeat 727163 727425 343 + . . scaffold406 TRF Tandem_Repeat 727174 727423 277 + . . scaffold406 TRF Tandem_Repeat 727558 727840 392 + . . scaffold406 TRF Tandem_Repeat 727558 727838 312 + . . scaffold406 TRF Tandem_Repeat 727558 727838 307 + . . scaffold406 GLEAN promoter 738243 739242 0.986536 + . ID=CGI_10023869; scaffold406 GLEAN mRNA 739243 739715 0.986536 + . ID=CGI_10023869; scaffold406 TRF Tandem_Repeat 741003 741883 1319 + . . scaffold406 WUBlastX LINE_L1 746636 747466 114 + . . scaffold406 TRF Tandem_Repeat 748756 748801 83 + . . scaffold406 GLEAN promoter 749169 750168 0.587095 + . ID=CGI_10023870; scaffold406 GLEAN mRNA 750169 761201 0.587095 + . ID=CGI_10023870; scaffold406 WUBlastX LINE_L1-Tx1 750795 754559 1932 + . . scaffold406 GLEAN mRNA 764097 769355 0.648556 - . ID=CGI_10023871; scaffold406 GLEAN promoter 769356 770355 0.648556 - . ID=CGI_10023871; scaffold406 TRF Tandem_Repeat 774190 774457 278 + . . scaffold406 GLEAN promoter 775791 776790 1 + . ID=CGI_10023872; scaffold406 GLEAN mRNA 776791 778674 1 + . ID=CGI_10023872; scaffold406 GLEAN mRNA 780190 805574 0.499911 - . ID=CGI_10023873; scaffold406 GLEAN promoter 788733 789732 0.997622 + . ID=CGI_10023874; scaffold406 GLEAN mRNA 789733 806403 0.997622 + . ID=CGI_10023874; scaffold406 TRF Tandem_Repeat 793742 793971 361 + . . scaffold406 TRF Tandem_Repeat 794586 794834 363 + . . scaffold406 GLEAN promoter 805575 806574 0.499911 - . ID=CGI_10023873; scaffold406 GLEAN mRNA 811431 815013 0.999937 - . ID=CGI_10023875; scaffold406 GLEAN promoter 815014 816013 0.999937 - . ID=CGI_10023875; scaffold406 TRF Tandem_Repeat 817339 818032 961 + . . scaffold406 TRF Tandem_Repeat 819875 819929 51 + . . scaffold406 TRF Tandem_Repeat 819900 819962 65 + . . scaffold406 TRF Tandem_Repeat 820078 820115 76 + . . scaffold406 TRF Tandem_Repeat 821091 821127 74 + . . scaffold406 GLEAN mRNA 825636 849779 0.999937 - . ID=CGI_10023876; scaffold406 TRF Tandem_Repeat 827033 827375 418 + . . scaffold406 TRF Tandem_Repeat 828957 829741 907 + . . scaffold406 TRF Tandem_Repeat 830567 830683 168 + . . scaffold406 GLEAN promoter 849780 850779 0.999937 - . ID=CGI_10023876; scaffold406 WUBlastX LINE_RTE-X 852703 853026 122 + . . scaffold406 WUBlastX LINE_RTE-X 852706 853140 93 + . . scaffold406 GLEAN promoter 853888 854887 0.999984 + . ID=CGI_10023877; scaffold406 GLEAN mRNA 854888 855367 0.999984 + . ID=CGI_10023877; scaffold406 GLEAN mRNA 858429 868391 1 - . ID=CGI_10023878; scaffold406 TRF Tandem_Repeat 861624 862712 952 + . . scaffold406 TRF Tandem_Repeat 861824 862712 1132 + . . scaffold406 GLEAN promoter 868392 869391 1 - . ID=CGI_10023878; scaffold406 TRF Tandem_Repeat 872157 872198 70 + . . scaffold40606 GLEAN promoter 6541 7540 0.834284 + . ID=CGI_10004278; scaffold40606 GLEAN mRNA 7541 35661 0.834284 + . ID=CGI_10004278; scaffold40606 TRF Tandem_Repeat 8875 8915 57 + . . scaffold40606 WUBlastX LINE_RTE-X 9082 9324 114 - . . scaffold40606 WUBlastX LINE_RTE-X 9324 9521 79 - . . scaffold40606 WUBlastX LINE_RTE-X 9324 9680 55 - . . scaffold40606 TRF Tandem_Repeat 24125 24365 410 + . . scaffold40606 TRF Tandem_Repeat 25175 25668 394 + . . scaffold40606 TRF Tandem_Repeat 25175 25668 435 + . . scaffold40606 TRF Tandem_Repeat 30806 30845 80 + . . scaffold40606 TRF Tandem_Repeat 33183 33398 344 + . . scaffold40606 GLEAN promoter 37314 38313 0.999372 + . ID=CGI_10004279; scaffold40606 WUBlastX DNA_IS4EU 38293 38643 73 + . . scaffold40606 GLEAN mRNA 38314 38649 0.999372 + . ID=CGI_10004279; scaffold40606 WUBlastX DNA_TcMar-Marin 43490 43921 22 + . . scaffold40606 WUBlastX DNA_TcMar-Marin 43565 43903 72 + . . scaffold40606 WUBlastX DNA_TcMar-Marin 43616 43951 96 + . . scaffold40606 GLEAN mRNA 45215 54197 0.629781 - . ID=CGI_10004280; scaffold40606 TRF Tandem_Repeat 47041 50437 3328 + . . scaffold40606 TRF Tandem_Repeat 47169 50437 3380 + . . scaffold40606 GLEAN promoter 53689 54688 1 + . ID=CGI_10004281; scaffold40606 GLEAN promoter 54198 55197 0.629781 - . ID=CGI_10004280; scaffold40606 GLEAN mRNA 54689 59760 1 + . ID=CGI_10004281; scaffold40606 GLEAN mRNA 71332 80121 0.999675 - . ID=CGI_10004282; scaffold40606 TRF Tandem_Repeat 74316 74351 63 + . . scaffold40606 GLEAN promoter 80122 81121 0.999675 - . ID=CGI_10004282; scaffold40606 GLEAN mRNA 82526 88004 0.640031 - . ID=CGI_10004283; scaffold40606 GLEAN promoter 88005 89004 0.640031 - . ID=CGI_10004283; scaffold40606 WUBlastX DNA_Academ 89067 89936 423 + . . scaffold40610 GLEAN promoter 66727 67726 0.999563 + . ID=CGI_10004236; scaffold40610 GLEAN mRNA 67727 69338 0.999563 + . ID=CGI_10004236; scaffold40610 GLEAN mRNA 77242 88995 0.976215 - . ID=CGI_10004237; scaffold40610 GLEAN promoter 88996 89995 0.976215 - . ID=CGI_10004237; scaffold40612 GLEAN mRNA 6726 22046 0.999932 - . ID=CGI_10004261; scaffold40612 GLEAN promoter 22047 23046 0.999932 - . ID=CGI_10004261; scaffold40612 GLEAN mRNA 42717 51626 1 - . ID=CGI_10004262; scaffold40612 GLEAN promoter 50871 51870 0.999675 + . ID=CGI_10004263; scaffold40612 GLEAN promoter 51627 52626 1 - . ID=CGI_10004262; scaffold40612 GLEAN mRNA 51871 62723 0.999675 + . ID=CGI_10004263; scaffold40612 GLEAN promoter 76049 77048 1 + . ID=CGI_10004264; scaffold40612 GLEAN mRNA 77049 83098 1 + . ID=CGI_10004264; scaffold40612 GLEAN mRNA 83135 89690 0.999612 - . ID=CGI_10004265; scaffold40612 GLEAN promoter 89691 90690 0.999612 - . ID=CGI_10004265; scaffold40612 GLEAN promoter 92422 93421 0.718028 + . ID=CGI_10004266; scaffold40612 GLEAN mRNA 93422 94444 0.718028 + . ID=CGI_10004266; scaffold40614 GLEAN promoter 20491 21490 0.84036 + . ID=CGI_10004255; scaffold40614 GLEAN mRNA 21491 30044 0.84036 + . ID=CGI_10004255; scaffold40614 TRF Tandem_Repeat 22699 22749 102 + . . scaffold40614 TRF Tandem_Repeat 25459 26104 679 + . . scaffold40614 GLEAN promoter 31206 32205 0.544823 + . ID=CGI_10004256; scaffold40614 GLEAN mRNA 32206 45574 0.544823 + . ID=CGI_10004256; scaffold40614 GLEAN mRNA 47107 49714 0.999376 - . ID=CGI_10004257; scaffold40614 TRF Tandem_Repeat 47264 47307 88 + . . scaffold40614 GLEAN promoter 49715 50714 0.999376 - . ID=CGI_10004257; scaffold40614 GLEAN mRNA 51334 53999 1 - . ID=CGI_10004258; scaffold40614 GLEAN promoter 54000 54999 1 - . ID=CGI_10004258; scaffold40614 GLEAN promoter 55089 56088 0.972217 + . ID=CGI_10004259; scaffold40614 GLEAN mRNA 56089 69167 0.972217 + . ID=CGI_10004259; scaffold40614 TRF Tandem_Repeat 59634 59681 60 + . . scaffold40614 TRF Tandem_Repeat 59635 59703 75 + . . scaffold40614 TRF Tandem_Repeat 59635 59703 66 + . . scaffold40614 WUBlastX LINE_L2 60948 61787 370 - . . scaffold40614 WUBlastX LINE_L2 61802 62284 265 - . . scaffold40614 WUBlastX LINE_L2 62290 62598 256 - . . scaffold40614 WUBlastX LINE_L2 62290 62694 141 - . . scaffold40614 WUBlastX LINE_L2 62673 63365 265 - . . scaffold40614 WUBlastX LTR_DIRS 64043 64543 283 - . . scaffold40614 WUBlastX LTR_DIRS 64546 64653 52 - . . scaffold40614 WUBlastX LTR_DIRS 64546 64692 37 - . . scaffold40614 TRF Tandem_Repeat 64948 65008 122 + . . scaffold40614 TRF Tandem_Repeat 70326 71300 991 + . . scaffold40614 TRF Tandem_Repeat 71886 71927 50 + . . scaffold40614 TRF Tandem_Repeat 74765 75528 964 + . . scaffold40614 TRF Tandem_Repeat 75698 75745 51 + . . scaffold40614 WUBlastX LINE_RTE-BovB 75828 76481 116 + . . scaffold40614 WUBlastX LINE_RTE-BovB 76467 77261 76 + . . scaffold40614 TRF Tandem_Repeat 80871 80896 52 + . . scaffold40614 GLEAN mRNA 81626 94326 0.949039 - . ID=CGI_10004260; scaffold40614 GLEAN promoter 94327 95326 0.949039 - . ID=CGI_10004260; scaffold40624 WUBlastX LINE_RTE-X 712 1161 84 - . . scaffold40624 WUBlastX LINE_RTE-X 829 1161 89 - . . scaffold40624 WUBlastX LINE_RTE-X 1172 1396 114 - . . scaffold40624 TRF Tandem_Repeat 1826 1909 100 + . . scaffold40624 TRF Tandem_Repeat 1827 1893 55 + . . scaffold40624 TRF Tandem_Repeat 1831 1894 67 + . . scaffold40624 WUBlastX LINE_RTE-X 1950 2219 93 - . . scaffold40624 WUBlastX LINE_RTE-X 1950 2177 100 - . . scaffold40624 WUBlastX LINE_L2 1959 2303 41 - . . scaffold40624 WUBlastX LINE_L1 9753 9794 22 + . . scaffold40624 TRF Tandem_Repeat 9939 10141 172 + . . scaffold40624 WUBlastX LINE_L1-Tx1 10579 10881 72 + . . scaffold40624 WUBlastX LINE_L1-Tx1 10633 11100 97 + . . scaffold40624 WUBlastX LINE_L1-Tx1 10633 11376 93 + . . scaffold40624 WUBlastX LINE_L1-Tx1 10633 10854 104 + . . scaffold40624 WUBlastX LINE_L1-Tx1 11424 11669 93 + . . scaffold40624 WUBlastX LINE_L1-Tx1 11657 11890 37 + . . scaffold40624 TRF Tandem_Repeat 12160 12213 90 + . . scaffold40624 TRF Tandem_Repeat 13653 13732 151 + . . scaffold40624 TRF Tandem_Repeat 14123 14172 84 + . . scaffold40624 TRF Tandem_Repeat 67490 67693 300 + . . scaffold40624 TRF Tandem_Repeat 76523 76552 60 + . . scaffold40624 TRF Tandem_Repeat 80958 80982 50 + . . scaffold40624 TRF Tandem_Repeat 81674 81711 67 + . . scaffold40624 WUBlastX LINE_L1-Tx1 88303 88593 41 + . . scaffold40624 WUBlastX LINE_L1-Tx1 88360 89283 224 + . . scaffold40624 WUBlastX LINE_L1-Tx1 89252 89641 103 + . . scaffold40624 WUBlastX LINE_L1-Tx1 89264 89758 102 + . . scaffold40624 WUBlastX DNA_Harbinger 92765 92896 72 - . . scaffold40624 WUBlastX DNA_Harbinger 94646 94765 28 - . . scaffold40624 WUBlastX DNA_Harbinger 94776 95354 253 - . . scaffold40634 GLEAN mRNA 9978 12590 0.999351 - . ID=CGI_10004272; scaffold40634 GLEAN promoter 12591 13590 0.999351 - . ID=CGI_10004272; scaffold40634 GLEAN promoter 39074 40073 0.527836 + . ID=CGI_10004273; scaffold40634 GLEAN mRNA 40074 50390 0.527836 + . ID=CGI_10004273; scaffold40634 GLEAN promoter 51062 52061 0.412024 + . ID=CGI_10004274; scaffold40634 GLEAN mRNA 52062 62469 0.412024 + . ID=CGI_10004274; scaffold40634 GLEAN mRNA 62492 68043 0.999676 - . ID=CGI_10004275; scaffold40634 GLEAN promoter 68044 69043 0.999676 - . ID=CGI_10004275; scaffold40634 GLEAN mRNA 68310 78997 0.530416 - . ID=CGI_10004276; scaffold40634 GLEAN promoter 78998 79997 0.530416 - . ID=CGI_10004276; scaffold40634 GLEAN promoter 82279 83278 1 + . ID=CGI_10004277; scaffold40634 GLEAN mRNA 83279 90636 1 + . ID=CGI_10004277; scaffold40638 TRF Tandem_Repeat 150 265 95 + . . scaffold40638 TRF Tandem_Repeat 155 269 52 + . . scaffold40638 GLEAN promoter 2072 3071 0.976327 + . ID=CGI_10004284; scaffold40638 GLEAN mRNA 3072 18093 0.976327 + . ID=CGI_10004284; scaffold40638 WUBlastX DNA_Zator 5627 5731 28 + . . scaffold40638 WUBlastX DNA_Zator 5868 6071 77 + . . scaffold40638 TRF Tandem_Repeat 14435 14491 114 + . . scaffold40638 TRF Tandem_Repeat 15796 15858 99 + . . scaffold40638 TRF Tandem_Repeat 15801 15858 80 + . . scaffold40638 TRF Tandem_Repeat 15805 15858 72 + . . scaffold40638 TRF Tandem_Repeat 16028 17387 2065 + . . scaffold40638 TRF Tandem_Repeat 16028 17387 2030 + . . scaffold40638 GLEAN promoter 20690 21689 0.999332 + . ID=CGI_10004285; scaffold40638 GLEAN mRNA 21690 26508 0.999332 + . ID=CGI_10004285; scaffold40638 TRF Tandem_Repeat 25506 25532 54 + . . scaffold40638 TRF Tandem_Repeat 26858 27636 986 + . . scaffold40638 TRF Tandem_Repeat 41448 41501 108 + . . scaffold40638 GLEAN mRNA 41609 59545 0.679878 - . ID=CGI_10004286; scaffold40638 WUBlastX LINE_L2 43445 43957 71 + . . scaffold40638 WUBlastX LINE_L2 43445 43801 115 + . . scaffold40638 WUBlastX LINE_L2 43811 44065 50 + . . scaffold40638 TRF Tandem_Repeat 47313 47381 70 + . . scaffold40638 TRF Tandem_Repeat 47313 47394 60 + . . scaffold40638 TRF Tandem_Repeat 47314 47381 61 + . . scaffold40638 TRF Tandem_Repeat 47314 47375 53 + . . scaffold40638 TRF Tandem_Repeat 47330 47394 76 + . . scaffold40638 TRF Tandem_Repeat 47340 47380 52 + . . scaffold40638 WUBlastX DNA_En-Spm 55324 56133 166 - . . scaffold40638 WUBlastX DNA_En-Spm 55570 56475 255 - . . scaffold40638 GLEAN promoter 59546 60545 0.679878 - . ID=CGI_10004286; scaffold40638 GLEAN mRNA 61308 67362 0.755375 - . ID=CGI_10004287; scaffold40638 WUBlastX LTR_Gypsy 62301 63635 296 - . . scaffold40638 WUBlastX LTR_Gypsy-Cigr 62523 66182 1378 - . . scaffold40638 WUBlastX LTR_Gypsy 65802 66251 33 - . . scaffold40638 WUBlastX LTR_ERVK 66215 66394 31 - . . scaffold40638 WUBlastX LTR_Gypsy-Cigr 66567 66941 148 - . . scaffold40638 GLEAN promoter 67363 68362 0.755375 - . ID=CGI_10004287; scaffold40638 TRF Tandem_Repeat 69888 69943 58 + . . scaffold40638 TRF Tandem_Repeat 74035 75018 1234 + . . scaffold40638 WUBlastX DNA_TcMar-Tc1 79381 79887 89 - . . scaffold40638 WUBlastX DNA_TcMar-Tc1 79381 80343 87 - . . scaffold40638 WUBlastX DNA_TcMar-Tc1 79381 79671 101 - . . scaffold40638 WUBlastX DNA_TcMar-Tc1 79384 79758 94 - . . scaffold40638 WUBlastX LINE_L1-Tx1 88933 89187 34 - . . scaffold40638 WUBlastX LINE_L1-Tx1 89000 89257 28 - . . scaffold40638 WUBlastX LINE_L1-Tx1 89012 89839 20 - . . scaffold40638 WUBlastX LINE_L1 89289 89501 37 - . . scaffold40638 WUBlastX LINE_L1-Tx1 89301 89477 43 - . . scaffold40638 WUBlastX LINE_L1 89585 89827 35 - . . scaffold40638 WUBlastX LINE_L1-Tx1 89844 89966 45 - . . scaffold40638 WUBlastX LINE_L1-Tx1 89884 90303 72 - . . scaffold40638 WUBlastX LINE_L1 89953 90312 155 - . . scaffold40638 WUBlastX LINE_L1-Tx1 89974 90840 67 - . . scaffold40638 WUBlastX LINE_L1-Tx1 90793 90864 26 - . . scaffold40638 WUBlastX LINE_L1-Tx1 91360 91398 23 - . . scaffold40644 GLEAN mRNA 428 4160 0.734569 - . ID=CGI_10004303; scaffold40644 GLEAN promoter 4161 5160 0.734569 - . ID=CGI_10004303; scaffold40644 TRF Tandem_Repeat 41528 41561 68 + . . scaffold40644 TRF Tandem_Repeat 46874 46914 55 + . . scaffold40644 TRF Tandem_Repeat 49336 49393 116 + . . scaffold40644 TRF Tandem_Repeat 55633 55667 61 + . . scaffold40644 GLEAN mRNA 58103 62583 0.495408 - . ID=CGI_10004304; scaffold40644 TRF Tandem_Repeat 61318 61359 57 + . . scaffold40644 GLEAN promoter 62584 63583 0.495408 - . ID=CGI_10004304; scaffold40644 GLEAN mRNA 67391 70289 0.997074 - . ID=CGI_10004305; scaffold40644 GLEAN promoter 70290 71289 0.997074 - . ID=CGI_10004305; scaffold40644 GLEAN mRNA 74819 77768 0.999935 - . ID=CGI_10004306; scaffold40644 TRF Tandem_Repeat 76880 76915 63 + . . scaffold40644 TRF Tandem_Repeat 77544 77575 55 + . . scaffold40644 WUBlastX LINE_Penelope 77667 77867 41 + . . scaffold40644 GLEAN promoter 77769 78768 0.999935 - . ID=CGI_10004306; scaffold40658 GLEAN mRNA 1183 11148 0.996819 - . ID=CGI_10004292; scaffold40658 GLEAN promoter 10934 11933 0.999406 + . ID=CGI_10004293; scaffold40658 GLEAN promoter 11149 12148 0.996819 - . ID=CGI_10004292; scaffold40658 GLEAN mRNA 11934 13798 0.999406 + . ID=CGI_10004293; scaffold40658 GLEAN mRNA 14143 31506 0.784517 - . ID=CGI_10004294; scaffold40658 GLEAN promoter 31507 32506 0.784517 - . ID=CGI_10004294; scaffold40658 GLEAN promoter 37086 38085 0.702157 + . ID=CGI_10004295; scaffold40658 GLEAN mRNA 38086 46039 0.702157 + . ID=CGI_10004295; scaffold40658 GLEAN mRNA 47389 49108 0.777738 - . ID=CGI_10004296; scaffold40658 GLEAN promoter 49109 50108 0.777738 - . ID=CGI_10004296; scaffold40658 GLEAN promoter 50447 51446 0.986568 + . ID=CGI_10004297; scaffold40658 GLEAN mRNA 51447 52736 0.986568 + . ID=CGI_10004297; scaffold40658 GLEAN promoter 54072 55071 0.999064 + . ID=CGI_10004298; scaffold40658 GLEAN mRNA 55072 55296 0.999064 + . ID=CGI_10004298; scaffold40658 GLEAN mRNA 66371 70422 0.835967 - . ID=CGI_10004299; scaffold40658 GLEAN promoter 70423 71422 0.835967 - . ID=CGI_10004299; scaffold40658 GLEAN promoter 70943 71942 0.263295 + . ID=CGI_10004300; scaffold40658 GLEAN mRNA 71943 84428 0.263295 + . ID=CGI_10004300; scaffold40658 GLEAN mRNA 84808 89260 0.999993 - . ID=CGI_10004301; scaffold40658 GLEAN promoter 89261 90260 0.999993 - . ID=CGI_10004301; scaffold40658 GLEAN promoter 89866 90865 0.998548 + . ID=CGI_10004302; scaffold40658 GLEAN mRNA 90866 95903 0.998548 + . ID=CGI_10004302; scaffold40664 GLEAN mRNA 1758 14277 0.543558 - . ID=CGI_10004328; scaffold40664 GLEAN promoter 13719 14718 1 + . ID=CGI_10004329; scaffold40664 GLEAN promoter 14278 15277 0.543558 - . ID=CGI_10004328; scaffold40664 GLEAN mRNA 14719 18593 1 + . ID=CGI_10004329; scaffold40664 GLEAN mRNA 23575 40099 0.363746 - . ID=CGI_10004330; scaffold40664 GLEAN promoter 40100 41099 0.363746 - . ID=CGI_10004330; scaffold40664 GLEAN promoter 42535 43534 0.996819 + . ID=CGI_10004331; scaffold40664 GLEAN mRNA 43535 66184 0.996819 + . ID=CGI_10004331; scaffold40664 GLEAN mRNA 68857 88135 1 - . ID=CGI_10004332; scaffold40664 GLEAN promoter 88136 89135 1 - . ID=CGI_10004332; scaffold40680 GLEAN mRNA 16 36776 0.246623 - . ID=CGI_10004353; scaffold40680 WUBlastX DNA_TcMar-Tc1 10821 10985 25 + . . scaffold40680 WUBlastX DNA_TcMar-Tc1 10887 10997 30 + . . scaffold40680 WUBlastX DNA_TcMar-Tc1 11135 11290 69 + . . scaffold40680 WUBlastX DNA_TcMar-Tc1 11478 11777 155 + . . scaffold40680 TRF Tandem_Repeat 19564 20660 1486 + . . scaffold40680 TRF Tandem_Repeat 19565 20660 1721 + . . scaffold40680 TRF Tandem_Repeat 19565 20660 1687 + . . scaffold40680 TRF Tandem_Repeat 22160 22980 1080 + . . scaffold40680 WUBlastX DNA_Harbinger 25006 25194 53 + . . scaffold40680 WUBlastX DNA_Harbinger 25006 25263 46 + . . scaffold40680 GLEAN promoter 26135 27134 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27042 27329 132 + . . scaffold40680 GLEAN mRNA 27135 28116 0.500588 + . ID=CGI_10004354; scaffold40680 WUBlastX DNA_Harbinger 27337 27693 144 + . . scaffold40680 WUBlastX DNA_Harbinger 27418 27699 219 + . . scaffold40680 WUBlastX DNA_Harbinger 27847 28113 40 + . . scaffold40680 WUBlastX DNA_En-Spm 29826 30113 107 - . . scaffold40680 WUBlastX DNA_En-Spm 29847 30188 100 - . . scaffold40680 WUBlastX LTR_Gypsy 34490 36340 1880 + . . scaffold40680 WUBlastX LTR_Copia 35810 36535 92 + . . scaffold40680 GLEAN promoter 36777 37776 0.246623 - . ID=CGI_10004353; scaffold40680 TRF Tandem_Repeat 37832 37982 159 + . . scaffold40680 TRF Tandem_Repeat 38226 38251 52 + . . scaffold40680 TRF Tandem_Repeat 39431 39526 94 + . . scaffold40680 TRF Tandem_Repeat 39432 39526 113 + . . scaffold40680 WUBlastX DNA_Zator 44926 45831 260 - . . scaffold40680 WUBlastX DNA_Zator 45813 46508 243 - . . scaffold40680 GLEAN mRNA 46860 47045 0.545835 - . ID=CGI_10004355; scaffold40680 WUBlastX DNA 46878 47024 32 - . . scaffold40680 GLEAN promoter 47046 48045 0.545835 - . ID=CGI_10004355; scaffold40680 TRF Tandem_Repeat 49433 50140 898 + . . scaffold40680 WUBlastX DNA_hAT-Ac 57518 57868 230 + . . scaffold40680 WUBlastX DNA_hAT-Ac 57533 57994 104 + . . scaffold40680 WUBlastX DNA_hAT-Ac 57629 57919 108 + . . scaffold40680 WUBlastX LTR_Ngaro 60902 61264 107 - . . scaffold40680 WUBlastX LTR_Ngaro 60914 61327 53 - . . scaffold40680 WUBlastX LTR_Ngaro 61393 61683 38 - . . scaffold40680 WUBlastX LTR_Ngaro 61393 61791 32 - . . scaffold40680 WUBlastX LTR_Ngaro 61778 62281 169 - . . scaffold40680 WUBlastX LTR_Ngaro 62274 62399 26 - . . scaffold40680 WUBlastX LINE_CR1-L2 63342 63668 78 - . . scaffold40680 WUBlastX LINE_CR1-L2 63991 64539 214 - . . scaffold40680 WUBlastX LINE_CR1-L2 63997 64461 234 - . . scaffold40680 WUBlastX LINE_L2 64455 64625 40 - . . scaffold40680 WUBlastX DNA_IS4EU 67498 67647 56 + . . scaffold40680 WUBlastX DNA_IS4EU 68032 68190 50 + . . scaffold40680 WUBlastX DNA_IS4EU 68608 68832 66 + . . scaffold40680 WUBlastX DNA_Kolobok-IS4 69195 69683 262 - . . scaffold40680 WUBlastX DNA_IS4EU 69276 69752 289 - . . scaffold40680 WUBlastX LINE_CR1 69777 69941 35 - . . scaffold40680 WUBlastX LINE_CR1-L2 69801 69932 47 - . . scaffold40680 WUBlastX LINE_CR1 69928 70080 22 - . . scaffold40680 WUBlastX LINE_L2 69985 70128 53 - . . scaffold40680 WUBlastX LINE_CR1-L2 70024 70131 54 - . . scaffold40680 WUBlastX LINE_CR1-L2 70024 70083 56 - . . scaffold40680 WUBlastX LINE_L2 70115 70369 128 - . . scaffold40680 WUBlastX LINE_CR1-L2 70118 70414 83 - . . scaffold40680 WUBlastX LINE_L2 71083 71250 51 - . . scaffold40680 WUBlastX LINE_L2 71083 71286 39 - . . scaffold40680 WUBlastX LINE_RTE-X 71872 72126 56 + . . scaffold40680 WUBlastX LINE_RTE-X 72126 72317 55 + . . scaffold40680 WUBlastX LTR_Ngaro 75869 76231 116 - . . scaffold40680 WUBlastX LTR_Copia 77764 78234 38 - . . scaffold40680 WUBlastX LTR_Gypsy 77896 78555 117 - . . scaffold40680 WUBlastX LTR_Gypsy 78259 78555 129 - . . scaffold40680 WUBlastX LTR_Gypsy 78545 78646 47 - . . scaffold40680 WUBlastX LTR_Gypsy 78545 78679 37 - . . scaffold40680 WUBlastX LTR_Gypsy-Cigr 78987 79058 20 - . . scaffold40680 WUBlastX LTR_Copia 79053 79100 24 - . . scaffold40680 WUBlastX LTR_Gypsy 79446 81413 1145 - . . scaffold40680 WUBlastX LTR_Gypsy 81403 81888 463 - . . scaffold40680 WUBlastX LTR_Gypsy 81403 82011 244 - . . scaffold40680 WUBlastX LTR_Gypsy 82520 82627 20 - . . scaffold40680 WUBlastX LTR_Ngaro 82615 82701 52 - . . scaffold40680 WUBlastX LTR_Ngaro 83287 83406 33 - . . scaffold40680 WUBlastX LTR_Ngaro 83392 83553 50 - . . scaffold40680 WUBlastX LTR_DIRS 85950 86327 175 - . . scaffold40680 WUBlastX LTR_DIRS 85956 86540 104 - . . scaffold40680 WUBlastX LTR_Caulimoviru 87104 87310 20 - . . scaffold40680 GLEAN mRNA 87436 87639 0.999372 - . ID=CGI_10004356; scaffold40680 GLEAN promoter 87640 88639 0.999372 - . ID=CGI_10004356; scaffold40680 WUBlastX LINE_L1-Tx1 90380 90844 54 - . . scaffold40680 WUBlastX LINE_L1-Tx1 90452 90853 56 - . . scaffold40680 WUBlastX LINE_L1-Tx1 90862 93015 1026 - . . scaffold40680 WUBlastX LINE_L1-Tx1 93012 94151 471 - . . scaffold40680 WUBlastX LINE_L1-Tx1 94165 95193 436 - . . scaffold40680 GLEAN mRNA 95867 96178 0.481511 - . ID=CGI_10004358; scaffold40680 GLEAN promoter 96179 97178 0.481511 - . ID=CGI_10004358; scaffold40690 WUBlastX LINE_L2 34 462 82 + . . scaffold40690 WUBlastX DNA_Kolobok-IS4 6692 7201 38 + . . scaffold40690 WUBlastX DNA_IS4EU 6818 7216 114 + . . scaffold40690 TRF Tandem_Repeat 21424 21490 89 + . . scaffold40690 TRF Tandem_Repeat 80181 80213 66 + . . scaffold40690 TRF Tandem_Repeat 92660 92716 55 + . . scaffold40690 GLEAN mRNA 95222 95701 1 - . ID=CGI_10004359; scaffold40690 GLEAN promoter 95702 96701 1 - . ID=CGI_10004359; scaffold407 TRF Tandem_Repeat 5187 5221 61 + . . scaffold407 GLEAN promoter 6424 7423 0.992202 + . ID=CGI_10002625; scaffold407 GLEAN mRNA 7424 12555 0.992202 + . ID=CGI_10002625; scaffold407 GLEAN promoter 12072 13071 0.999998 + . ID=CGI_10002626; scaffold407 GLEAN mRNA 13072 17204 0.999998 + . ID=CGI_10002626; scaffold407 WUBlastX LINE_RTE 14000 14137 35 + . . scaffold407 WUBlastX LINE_L2 14495 14896 80 + . . scaffold407 WUBlastX LINE_L2 14561 14896 197 + . . scaffold407 WUBlastX LINE_L2 14896 15492 214 + . . scaffold407 WUBlastX LINE_CR1-L2 15435 15632 29 + . . scaffold407 TRF Tandem_Repeat 15665 15722 62 + . . scaffold407 TRF Tandem_Repeat 18381 18862 503 + . . scaffold407 GLEAN promoter 18465 19464 0.650884 + . ID=CGI_10002627; scaffold407 GLEAN mRNA 19465 35495 0.650884 + . ID=CGI_10002627; scaffold407 GLEAN mRNA 27985 29580 1 - . ID=CGI_10002628; scaffold407 GLEAN promoter 29581 30580 1 - . ID=CGI_10002628; scaffold407 TRF Tandem_Repeat 43026 43168 144 + . . scaffold407 TRF Tandem_Repeat 43238 43466 181 + . . scaffold407 TRF Tandem_Repeat 43551 43651 94 + . . scaffold407 TRF Tandem_Repeat 43824 43913 110 + . . scaffold407 TRF Tandem_Repeat 44109 44224 94 + . . scaffold407 TRF Tandem_Repeat 47603 47640 76 + . . scaffold407 TRF Tandem_Repeat 47640 47699 120 + . . scaffold40702 GLEAN mRNA 69660 78754 0.999501 - . ID=CGI_10004374; scaffold40702 GLEAN promoter 78755 79754 0.999501 - . ID=CGI_10004374; scaffold40740 GLEAN mRNA 1296 2255 0.99742 - . ID=CGI_10004393; scaffold40740 GLEAN promoter 2256 3255 0.99742 - . ID=CGI_10004393; scaffold40740 GLEAN mRNA 2534 26221 0.997343 - . ID=CGI_10004394; scaffold40740 TRF Tandem_Repeat 10555 10597 86 + . . scaffold40740 TRF Tandem_Repeat 13532 13652 86 + . . scaffold40740 TRF Tandem_Repeat 13773 13922 63 + . . scaffold40740 GLEAN promoter 26222 27221 0.997343 - . ID=CGI_10004394; scaffold40740 TRF Tandem_Repeat 29247 29296 100 + . . scaffold40740 GLEAN mRNA 35494 41770 1 - . ID=CGI_10004395; scaffold40740 TRF Tandem_Repeat 37164 37191 56 + . . scaffold40740 TRF Tandem_Repeat 38506 38543 51 + . . scaffold40740 GLEAN promoter 41771 42770 1 - . ID=CGI_10004395; scaffold40740 GLEAN promoter 44656 45655 0.958072 + . ID=CGI_10004396; scaffold40740 GLEAN mRNA 45656 62359 0.958072 + . ID=CGI_10004396; scaffold40740 GLEAN mRNA 63778 65304 0.999996 - . ID=CGI_10004397; scaffold40740 GLEAN promoter 65305 66304 0.999996 - . ID=CGI_10004397; scaffold40740 TRF Tandem_Repeat 66905 66951 51 + . . scaffold40740 GLEAN mRNA 67016 76678 0.282731 - . ID=CGI_10004398; scaffold40740 WUBlastX LINE_RTE-X 71838 72092 36 - . . scaffold40740 GLEAN promoter 76180 77179 0.532323 + . ID=CGI_10004399; scaffold40740 GLEAN promoter 76679 77678 0.282731 - . ID=CGI_10004398; scaffold40740 GLEAN mRNA 77180 96954 0.532323 + . ID=CGI_10004399; scaffold40740 TRF Tandem_Repeat 97006 97049 72 + . . scaffold40740 TRF Tandem_Repeat 97100 97886 924 + . . scaffold40744 TRF Tandem_Repeat 4672 4991 406 + . . scaffold40744 TRF Tandem_Repeat 5400 6473 1286 + . . scaffold40744 TRF Tandem_Repeat 5400 6472 1266 + . . scaffold40744 TRF Tandem_Repeat 5400 6473 766 + . . scaffold40744 GLEAN promoter 6421 7420 0.544464 + . ID=CGI_10004375; scaffold40744 GLEAN mRNA 7421 26832 0.544464 + . ID=CGI_10004375; scaffold40744 TRF Tandem_Repeat 22727 23385 783 + . . scaffold40744 TRF Tandem_Repeat 22752 22844 66 + . . scaffold40744 TRF Tandem_Repeat 22794 23359 97 + . . scaffold40744 GLEAN promoter 27179 28178 0.999024 + . ID=CGI_10004376; scaffold40744 GLEAN mRNA 28179 36974 0.999024 + . ID=CGI_10004376; scaffold40744 GLEAN mRNA 46216 54915 1 - . ID=CGI_10004377; scaffold40744 GLEAN promoter 54916 55915 1 - . ID=CGI_10004377; scaffold40744 WUBlastX DNA_Sola 72891 73100 43 - . . scaffold40744 WUBlastX DNA_Sola 74334 74585 58 - . . scaffold40744 WUBlastX DNA_Sola 74531 74905 69 - . . scaffold40744 WUBlastX DNA_Sola 74543 74857 95 - . . scaffold40744 WUBlastX DNA_Sola 74878 75123 51 - . . scaffold40744 WUBlastX DNA_Sola 75045 76079 25 - . . scaffold40744 WUBlastX DNA_Sola 75177 75629 105 - . . scaffold40744 WUBlastX DNA_Sola 75234 75842 84 - . . scaffold40744 WUBlastX DNA_Sola 76299 76343 24 - . . scaffold40744 TRF Tandem_Repeat 77161 78338 1204 + . . scaffold40744 TRF Tandem_Repeat 80834 80904 51 + . . scaffold40744 GLEAN promoter 87725 88724 0.911813 + . ID=CGI_10004378; scaffold40744 GLEAN mRNA 88725 89332 0.911813 + . ID=CGI_10004378; scaffold40744 GLEAN promoter 88941 89940 0.899736 + . ID=CGI_10004379; scaffold40744 GLEAN promoter 89916 90915 0.882871 + . ID=CGI_10004380; scaffold40744 GLEAN mRNA 89941 90165 0.899736 + . ID=CGI_10004379; scaffold40744 GLEAN mRNA 90916 94422 0.882871 + . ID=CGI_10004380; scaffold40744 WUBlastX LINE_L1-Tx1 91092 91934 82 + . . scaffold40752 TRF Tandem_Repeat 1354 1383 60 + . . scaffold40752 TRF Tandem_Repeat 8256 8284 51 + . . scaffold40752 TRF Tandem_Repeat 12510 12610 152 + . . scaffold40752 TRF Tandem_Repeat 14643 14734 139 + . . scaffold40752 TRF Tandem_Repeat 22484 22563 160 + . . scaffold40752 TRF Tandem_Repeat 54263 54299 74 + . . scaffold40752 TRF Tandem_Repeat 57347 57381 70 + . . scaffold40752 WUBlastX DNA_TcMar-Marin 59724 60389 360 + . . scaffold40752 WUBlastX DNA_TcMar-Marin 60580 60984 232 + . . scaffold40752 TRF Tandem_Repeat 64065 65389 1135 + . . scaffold40752 TRF Tandem_Repeat 64623 65389 875 + . . scaffold40752 WUBlastX LINE_RTE-BovB 71877 71978 34 + . . scaffold40752 WUBlastX LINE_RTE-BovB 71895 72011 57 + . . scaffold40752 WUBlastX LINE_RTE-BovB 71928 72107 34 + . . scaffold40752 WUBlastX LINE_RTE-BovB 71934 72053 44 + . . scaffold40752 WUBlastX LINE_RTE-BovB 72881 73762 252 + . . scaffold40752 WUBlastX LINE_RTE-X 74217 74366 29 + . . scaffold40752 WUBlastX LINE_RTE-RTE 74265 74363 38 + . . scaffold40752 WUBlastX LINE_RTE-X 74302 74826 72 + . . scaffold40752 WUBlastX LINE_RTE-BovB 74389 74826 245 + . . scaffold40752 WUBlastX LINE_RTE-BovB 74775 75131 131 + . . scaffold40752 WUBlastX LINE_RTE-BovB 74975 75523 148 + . . scaffold40752 WUBlastX DNA_TcMar-Fot1 75496 76032 35 - . . scaffold40752 WUBlastX DNA_TcMar-Fot1 75673 75981 70 - . . scaffold40752 WUBlastX DNA_TcMar-Fot1 75688 76191 45 - . . scaffold40752 WUBlastX LINE_L1-Tx1 79562 80005 53 + . . scaffold40752 WUBlastX LINE_L1 79838 80011 58 + . . scaffold40752 WUBlastX LINE_L1 79853 80047 47 + . . scaffold40752 TRF Tandem_Repeat 82977 83003 54 + . . scaffold40752 WUBlastX LINE_RTE-X 83166 83468 105 - . . scaffold40752 WUBlastX LINE_RTE-X 83253 83486 109 - . . scaffold40752 WUBlastX LINE_RTE-X 83468 85042 1060 - . . scaffold40752 TRF Tandem_Repeat 86904 87073 277 + . . scaffold40786 TRF Tandem_Repeat 675 710 72 + . . scaffold40786 WUBlastX LINE_L2 5229 5945 137 + . . scaffold40786 WUBlastX LINE_L1 5340 5978 252 + . . scaffold40786 WUBlastX LINE_RTE-X 6106 6609 72 + . . scaffold40786 GLEAN promoter 6257 7256 0.999999 + . ID=CGI_10004439; scaffold40786 WUBlastX LINE_L2 7035 7763 128 + . . scaffold40786 WUBlastX LINE_L2 7206 8423 618 + . . scaffold40786 GLEAN mRNA 7257 8429 0.999999 + . ID=CGI_10004439; scaffold40786 WUBlastX LINE_RTE-X 9012 9332 48 + . . scaffold40786 WUBlastX LINE_RTE-X 9042 9308 67 + . . scaffold40786 WUBlastX LINE_RTE-X 9802 9858 20 + . . scaffold40786 WUBlastX LINE_RTE-X 9912 10208 71 + . . scaffold40786 WUBlastX LINE_RTE-X 10239 10370 64 + . . scaffold40786 WUBlastX LINE_RTE-X 10367 10687 52 + . . scaffold40786 WUBlastX LINE_RTE-X 10382 10618 68 + . . scaffold40786 WUBlastX LINE_RTE-X 10633 10989 43 + . . scaffold40786 WUBlastX LTR_DIRS 11716 11934 25 - . . scaffold40786 WUBlastX LTR_DIRS 11855 12256 92 - . . scaffold40786 WUBlastX LTR_DIRS 12510 12824 49 - . . scaffold40786 WUBlastX LTR_DIRS 13060 13287 61 - . . scaffold40786 WUBlastX LTR_DIRS 13108 13332 20 - . . scaffold40786 WUBlastX LTR_DIRS 13781 13867 33 - . . scaffold40786 TRF Tandem_Repeat 17231 17281 102 + . . scaffold40786 WUBlastX LINE_RTE-X 20150 20698 78 + . . scaffold40786 WUBlastX LINE_RTE-X 20156 20578 115 + . . scaffold40786 GLEAN promoter 21180 22179 0.650709 + . ID=CGI_10004440; scaffold40786 GLEAN mRNA 22180 42004 0.650709 + . ID=CGI_10004440; scaffold40786 TRF Tandem_Repeat 26001 26086 172 + . . scaffold40786 TRF Tandem_Repeat 28861 28982 149 + . . scaffold40786 TRF Tandem_Repeat 38557 38609 106 + . . scaffold40786 WUBlastX LINE_L2 41572 41676 23 + . . scaffold40786 WUBlastX LINE_L2 41639 42037 113 + . . scaffold40786 TRF Tandem_Repeat 64028 64084 53 + . . scaffold40786 TRF Tandem_Repeat 66182 66237 112 + . . scaffold40786 TRF Tandem_Repeat 67212 67298 165 + . . scaffold40786 TRF Tandem_Repeat 93185 93215 62 + . . scaffold40794 WUBlastX DNA_IS4EU 613 753 29 + . . scaffold40794 WUBlastX DNA_IS4EU 950 1282 47 + . . scaffold40794 WUBlastX DNA_IS4EU 1823 1993 28 + . . scaffold40794 WUBlastX DNA_Kolobok-IS4 5194 5712 73 - . . scaffold40794 GLEAN mRNA 13820 26649 0.999201 - . ID=CGI_10004495; scaffold40794 WUBlastX DNA_IS4EU 21488 21754 53 + . . scaffold40794 WUBlastX DNA_IS4EU 22122 22322 40 + . . scaffold40794 WUBlastX DNA_IS4EU 23579 24037 212 - . . scaffold40794 WUBlastX DNA_IS4EU 24031 24507 85 - . . scaffold40794 WUBlastX DNA_Kolobok-IS4 24031 24411 109 - . . scaffold40794 WUBlastX DNA_Kolobok-IS4 24785 25438 212 + . . scaffold40794 WUBlastX DNA_IS4EU 24806 25345 242 + . . scaffold40794 GLEAN promoter 26650 27649 0.999201 - . ID=CGI_10004495; scaffold40794 TRF Tandem_Repeat 37589 37644 112 + . . scaffold40794 TRF Tandem_Repeat 45914 45965 104 + . . scaffold40794 WUBlastX RC_Helitron 48794 49081 39 - . . scaffold40794 WUBlastX RC_Helitron 50287 50715 89 - . . scaffold40794 WUBlastX RC_Helitron 50407 50739 106 - . . scaffold40794 TRF Tandem_Repeat 55501 55582 146 + . . scaffold40794 TRF Tandem_Repeat 67263 67384 190 + . . scaffold40794 WUBlastX LTR_Pao 70251 70478 52 - . . scaffold40794 WUBlastX LTR_Pao 70314 70817 168 - . . scaffold40794 WUBlastX LTR_Pao 70463 70747 211 - . . scaffold40794 WUBlastX LTR_Pao 70822 71130 120 - . . scaffold40794 WUBlastX LTR_Pao 71075 71584 192 - . . scaffold40794 WUBlastX LTR_Pao 71171 71584 248 - . . scaffold40794 WUBlastX LTR_Pao 71568 71954 305 - . . scaffold40794 WUBlastX LTR_Pao 71954 72403 89 - . . scaffold40794 WUBlastX LTR_Pao 71966 72307 274 - . . scaffold40794 TRF Tandem_Repeat 73162 73216 65 + . . scaffold40794 TRF Tandem_Repeat 73165 73220 71 + . . scaffold40794 WUBlastX LTR_Pao 73239 73598 130 - . . scaffold40794 WUBlastX LTR_Pao 73254 73550 136 - . . scaffold40794 WUBlastX LTR_Pao 73263 73697 121 - . . scaffold40794 WUBlastX LTR_Pao 73724 74083 43 - . . scaffold40794 WUBlastX LTR_Pao 73865 74383 26 - . . scaffold40794 TRF Tandem_Repeat 81361 81459 182 + . . scaffold40794 TRF Tandem_Repeat 81501 81601 103 + . . scaffold40794 TRF Tandem_Repeat 82266 82452 117 + . . scaffold40794 TRF Tandem_Repeat 97477 97562 68 + . . scaffold40794 TRF Tandem_Repeat 98615 98731 92 + . . scaffold408 TRF Tandem_Repeat 1051 1111 95 + . . scaffold408 GLEAN mRNA 2463 15340 0.832814 - . ID=CGI_10023209; scaffold408 TRF Tandem_Repeat 4566 4620 53 + . . scaffold408 TRF Tandem_Repeat 4725 4759 70 + . . scaffold408 TRF Tandem_Repeat 5453 5817 388 + . . scaffold408 TRF Tandem_Repeat 5455 5817 440 + . . scaffold408 TRF Tandem_Repeat 6640 6774 162 + . . scaffold408 TRF Tandem_Repeat 9757 9785 58 + . . scaffold408 TRF Tandem_Repeat 11876 11966 175 + . . scaffold408 GLEAN promoter 12162 13161 0.608951 + . ID=CGI_10023210; scaffold408 GLEAN mRNA 13162 17103 0.608951 + . ID=CGI_10023210; scaffold408 GLEAN promoter 15341 16340 0.832814 - . ID=CGI_10023209; scaffold408 GLEAN promoter 21172 22171 0.994741 + . ID=CGI_10023211; scaffold408 GLEAN mRNA 22172 26878 0.994741 + . ID=CGI_10023211; scaffold408 TRF Tandem_Repeat 22500 22545 92 + . . scaffold408 GLEAN promoter 27086 28085 1 + . ID=CGI_10023212; scaffold408 GLEAN mRNA 28086 32134 1 + . ID=CGI_10023212; scaffold408 GLEAN mRNA 36270 48195 0.593241 - . ID=CGI_10023213; scaffold408 GLEAN promoter 47779 48778 0.999066 + . ID=CGI_10023214; scaffold408 GLEAN promoter 48196 49195 0.593241 - . ID=CGI_10023213; scaffold408 GLEAN mRNA 48779 49285 0.999066 + . ID=CGI_10023214; scaffold408 GLEAN promoter 49811 50810 0.692043 + . ID=CGI_10023215; scaffold408 GLEAN mRNA 50811 51269 0.692043 + . ID=CGI_10023215; scaffold408 TRF Tandem_Repeat 56864 56902 53 + . . scaffold408 TRF Tandem_Repeat 57055 57130 55 + . . scaffold408 TRF Tandem_Repeat 57807 57878 53 + . . scaffold408 TRF Tandem_Repeat 58355 58429 55 + . . scaffold408 TRF Tandem_Repeat 59465 59497 66 + . . scaffold408 TRF Tandem_Repeat 89816 89870 103 + . . scaffold408 GLEAN promoter 94162 95161 1 + . ID=CGI_10023216; scaffold408 GLEAN mRNA 95162 95569 1 + . ID=CGI_10023216; scaffold408 TRF Tandem_Repeat 101999 102297 535 + . . scaffold408 GLEAN promoter 102182 103181 1 + . ID=CGI_10023217; scaffold408 GLEAN mRNA 103182 103592 1 + . ID=CGI_10023217; scaffold408 TRF Tandem_Repeat 106982 107015 68 + . . scaffold408 TRF Tandem_Repeat 108951 108995 90 + . . scaffold408 TRF Tandem_Repeat 109460 109697 215 + . . scaffold408 TRF Tandem_Repeat 109460 109697 314 + . . scaffold408 TRF Tandem_Repeat 111428 111747 241 + . . scaffold408 TRF Tandem_Repeat 111431 111735 227 + . . scaffold408 TRF Tandem_Repeat 111495 111748 285 + . . scaffold408 GLEAN promoter 112556 113555 0.993519 + . ID=CGI_10023218; scaffold408 GLEAN mRNA 113556 114206 0.993519 + . ID=CGI_10023218; scaffold408 TRF Tandem_Repeat 116577 116611 70 + . . scaffold408 TRF Tandem_Repeat 121952 121978 54 + . . scaffold408 GLEAN promoter 122906 123905 0.998492 + . ID=CGI_10023219; scaffold408 GLEAN mRNA 123906 125307 0.998492 + . ID=CGI_10023219; scaffold408 GLEAN promoter 128872 129871 0.858615 + . ID=CGI_10023220; scaffold408 GLEAN mRNA 129872 139394 0.858615 + . ID=CGI_10023220; scaffold408 GLEAN mRNA 132922 140595 0.999999 - . ID=CGI_10023221; scaffold408 GLEAN promoter 138677 139676 0.863771 + . ID=CGI_10023222; scaffold408 GLEAN mRNA 139677 150919 0.863771 + . ID=CGI_10023222; scaffold408 GLEAN promoter 140596 141595 0.999999 - . ID=CGI_10023221; scaffold408 TRF Tandem_Repeat 144161 144382 285 + . . scaffold408 GLEAN mRNA 145684 147922 0.999985 - . ID=CGI_10023223; scaffold408 TRF Tandem_Repeat 146301 146375 150 + . . scaffold408 GLEAN promoter 147923 148922 0.999985 - . ID=CGI_10023223; scaffold408 GLEAN mRNA 152979 155792 0.784086 - . ID=CGI_10023224; scaffold408 TRF Tandem_Repeat 153535 153585 102 + . . scaffold408 GLEAN promoter 155793 156792 0.784086 - . ID=CGI_10023224; scaffold408 GLEAN promoter 156202 157201 1 + . ID=CGI_10023225; scaffold408 GLEAN mRNA 157202 163452 1 + . ID=CGI_10023225; scaffold408 TRF Tandem_Repeat 158130 158165 72 + . . scaffold408 GLEAN mRNA 166088 176801 0.863748 - . ID=CGI_10023226; scaffold408 TRF Tandem_Repeat 175720 175763 88 + . . scaffold408 GLEAN promoter 176802 177801 0.863748 - . ID=CGI_10023226; scaffold408 WUBlastX LINE_CR1-L2 177180 177509 21 + . . scaffold408 WUBlastX LINE_L2 177180 177452 65 + . . scaffold408 GLEAN promoter 177213 178212 0.91332 + . ID=CGI_10023227; scaffold408 GLEAN mRNA 178213 182270 0.91332 + . ID=CGI_10023227; scaffold408 TRF Tandem_Repeat 180929 180969 66 + . . scaffold408 TRF Tandem_Repeat 181565 181632 127 + . . scaffold408 TRF Tandem_Repeat 181670 181725 55 + . . scaffold408 TRF Tandem_Repeat 189752 189810 118 + . . scaffold408 GLEAN mRNA 192208 194770 1 - . ID=CGI_10023228; scaffold408 GLEAN promoter 194771 195770 1 - . ID=CGI_10023228; scaffold408 WUBlastX LINE_CR1-L2 197308 197406 22 + . . scaffold408 WUBlastX LINE_L2 197597 197677 37 + . . scaffold408 TRF Tandem_Repeat 199557 199730 197 + . . scaffold408 GLEAN promoter 200550 201549 1 + . ID=CGI_10023229; scaffold408 GLEAN mRNA 201550 202005 1 + . ID=CGI_10023229; scaffold408 GLEAN mRNA 208734 215725 1 - . ID=CGI_10023230; scaffold408 TRF Tandem_Repeat 209929 211422 1711 + . . scaffold408 TRF Tandem_Repeat 209929 211422 1694 + . . scaffold408 GLEAN promoter 215726 216725 1 - . ID=CGI_10023230; scaffold408 TRF Tandem_Repeat 231744 231780 74 + . . scaffold408 TRF Tandem_Repeat 234769 234816 96 + . . scaffold408 TRF Tandem_Repeat 250698 250731 68 + . . scaffold408 TRF Tandem_Repeat 250910 250935 52 + . . scaffold408 WUBlastX LTR_Pao 254199 254732 24 + . . scaffold408 WUBlastX LTR_Pao 254343 255530 243 + . . scaffold408 WUBlastX LTR_Pao 254445 255410 254 + . . scaffold408 WUBlastX LTR_Pao 254676 255440 255 + . . scaffold408 WUBlastX LTR_Pao 254781 255419 313 + . . scaffold408 WUBlastX LTR_Pao 255397 255708 100 + . . scaffold408 WUBlastX LTR_Pao 255683 255820 87 + . . scaffold408 WUBlastX LTR_Pao 256403 256828 276 + . . scaffold408 WUBlastX LTR_Pao 256782 257330 340 + . . scaffold408 WUBlastX LTR_Pao 256932 257414 145 + . . scaffold408 WUBlastX LTR_Pao 256947 257510 58 + . . scaffold408 WUBlastX LTR_Pao 258122 258199 20 + . . scaffold408 WUBlastX LTR_Pao 258449 260272 1642 + . . scaffold408 TRF Tandem_Repeat 267504 267528 50 + . . scaffold408 WUBlastX LTR_Ngaro 277044 277538 130 - . . scaffold408 WUBlastX LTR_Ngaro 277562 277888 68 - . . scaffold408 WUBlastX LTR_Ngaro 277855 278076 94 - . . scaffold408 WUBlastX LTR_Ngaro 278081 278311 166 - . . scaffold408 GLEAN promoter 292283 293282 0.976627 + . ID=CGI_10023231; scaffold408 GLEAN mRNA 293283 297277 0.976627 + . ID=CGI_10023231; scaffold408 WUBlastX DNA_Sola 304488 304577 28 - . . scaffold408 WUBlastX DNA_Sola 305217 305312 26 - . . scaffold408 WUBlastX DNA_Sola 305308 305508 56 - . . scaffold408 WUBlastX DNA_Sola 305308 305460 66 - . . scaffold408 WUBlastX DNA_Harbinger 316519 316653 50 - . . scaffold408 WUBlastX DNA_Harbinger 316525 316677 43 - . . scaffold408 WUBlastX DNA_Harbinger 316930 317064 53 - . . scaffold408 TRF Tandem_Repeat 347026 347060 70 + . . scaffold408 TRF Tandem_Repeat 348780 348831 104 + . . scaffold408 TRF Tandem_Repeat 358894 358957 71 + . . scaffold408 TRF Tandem_Repeat 359010 359050 82 + . . scaffold408 GLEAN promoter 359626 360625 1 + . ID=CGI_10023232; scaffold408 GLEAN mRNA 360626 362644 1 + . ID=CGI_10023232; scaffold408 TRF Tandem_Repeat 370829 371288 719 + . . scaffold408 TRF Tandem_Repeat 376195 376295 103 + . . scaffold408 GLEAN promoter 380712 381711 1 + . ID=CGI_10023233; scaffold408 GLEAN mRNA 381712 388064 1 + . ID=CGI_10023233; scaffold408 GLEAN promoter 390238 391237 0.999839 + . ID=CGI_10023234; scaffold408 GLEAN mRNA 391238 393021 0.999839 + . ID=CGI_10023234; scaffold408 GLEAN mRNA 394876 396323 0.434008 - . ID=CGI_10023235; scaffold408 GLEAN promoter 396324 397323 0.434008 - . ID=CGI_10023235; scaffold408 GLEAN mRNA 398041 414352 0.999496 - . ID=CGI_10023236; scaffold408 TRF Tandem_Repeat 398167 398198 64 + . . scaffold408 TRF Tandem_Repeat 398880 400191 2121 + . . scaffold408 TRF Tandem_Repeat 401889 402375 731 + . . scaffold408 TRF Tandem_Repeat 404736 404880 98 + . . scaffold408 GLEAN promoter 405784 406783 0.645696 + . ID=CGI_10023237; scaffold408 GLEAN mRNA 406784 420742 0.645696 + . ID=CGI_10023237; scaffold408 TRF Tandem_Repeat 408197 409131 1420 + . . scaffold408 TRF Tandem_Repeat 412184 412215 55 + . . scaffold408 GLEAN promoter 414353 415352 0.999496 - . ID=CGI_10023236; scaffold408 TRF Tandem_Repeat 417751 418150 260 + . . scaffold408 TRF Tandem_Repeat 417752 418126 185 + . . scaffold408 TRF Tandem_Repeat 417752 418168 336 + . . scaffold408 TRF Tandem_Repeat 418981 419118 109 + . . scaffold408 GLEAN mRNA 422121 432580 0.840296 - . ID=CGI_10023238; scaffold408 TRF Tandem_Repeat 424025 424066 84 + . . scaffold408 WUBlastX LINE_RTE-X 427627 428235 222 - . . scaffold408 WUBlastX LINE_RTE-X 428244 428354 74 - . . scaffold408 GLEAN promoter 432581 433580 0.840296 - . ID=CGI_10023238; scaffold408 GLEAN promoter 434819 435818 0.999999 + . ID=CGI_10023239; scaffold408 GLEAN mRNA 435819 447676 0.999999 + . ID=CGI_10023239; scaffold408 GLEAN promoter 446990 447989 1 + . ID=CGI_10023240; scaffold408 GLEAN mRNA 447990 449820 1 + . ID=CGI_10023240; scaffold408 GLEAN mRNA 450995 466843 0.400915 - . ID=CGI_10023241; scaffold408 GLEAN promoter 466844 467843 0.400915 - . ID=CGI_10023241; scaffold408 GLEAN mRNA 467172 496516 0.404685 - . ID=CGI_10023242; scaffold408 GLEAN promoter 496434 497433 1 + . ID=CGI_10023243; scaffold408 GLEAN promoter 496517 497516 0.404685 - . ID=CGI_10023242; scaffold408 GLEAN mRNA 497434 499679 1 + . ID=CGI_10023243; scaffold408 TRF Tandem_Repeat 499754 499797 79 + . . scaffold408 GLEAN promoter 501740 502739 1 + . ID=CGI_10023244; scaffold408 GLEAN mRNA 502740 504830 1 + . ID=CGI_10023244; scaffold408 GLEAN promoter 504427 505426 1 + . ID=CGI_10023245; scaffold408 GLEAN mRNA 505427 506333 1 + . ID=CGI_10023245; scaffold408 TRF Tandem_Repeat 506332 506380 98 + . . scaffold408 GLEAN mRNA 506828 512438 0.999305 - . ID=CGI_10023246; scaffold408 GLEAN promoter 512439 513438 0.999305 - . ID=CGI_10023246; scaffold408 TRF Tandem_Repeat 519404 519467 128 + . . scaffold408 GLEAN mRNA 521268 548208 0.934238 - . ID=CGI_10023247; scaffold408 TRF Tandem_Repeat 529390 529945 312 + . . scaffold408 TRF Tandem_Repeat 529390 529643 271 + . . scaffold408 TRF Tandem_Repeat 529402 529459 60 + . . scaffold408 TRF Tandem_Repeat 529405 529665 170 + . . scaffold408 TRF Tandem_Repeat 529526 529664 124 + . . scaffold408 TRF Tandem_Repeat 529702 529919 169 + . . scaffold408 TRF Tandem_Repeat 543372 543646 363 + . . scaffold408 TRF Tandem_Repeat 543565 543883 278 + . . scaffold408 GLEAN promoter 548209 549208 0.934238 - . ID=CGI_10023247; scaffold408 GLEAN promoter 549879 550878 0.987994 + . ID=CGI_10023248; scaffold408 GLEAN mRNA 550879 552798 0.987994 + . ID=CGI_10023248; scaffold408 GLEAN mRNA 551872 569972 0.499918 - . ID=CGI_10023249; scaffold408 TRF Tandem_Repeat 554120 554144 50 + . . scaffold408 WUBlastX LTR_DIRS 564387 564455 20 - . . scaffold408 WUBlastX LTR_DIRS 564461 564772 45 - . . scaffold408 WUBlastX LTR_DIRS 564491 564697 84 - . . scaffold408 GLEAN promoter 568241 569240 0.544851 + . ID=CGI_10023250; scaffold408 GLEAN mRNA 569241 592286 0.544851 + . ID=CGI_10023250; scaffold408 GLEAN promoter 569973 570972 0.499918 - . ID=CGI_10023249; scaffold408 TRF Tandem_Repeat 571347 571376 60 + . . scaffold408 TRF Tandem_Repeat 572181 572236 112 + . . scaffold408 TRF Tandem_Repeat 580922 580954 66 + . . scaffold408 TRF Tandem_Repeat 583117 583143 54 + . . scaffold408 WUBlastX LINE_R2-Hero 592341 593225 453 + . . scaffold408 WUBlastX LINE_R2-Hero 593234 593374 45 + . . scaffold408 WUBlastX LINE_R2-Hero 593234 593404 39 + . . scaffold408 GLEAN mRNA 594032 595291 0.999991 - . ID=CGI_10023251; scaffold408 GLEAN promoter 595292 596291 0.999991 - . ID=CGI_10023251; scaffold408 GLEAN promoter 595838 596837 0.99818 + . ID=CGI_10023252; scaffold408 GLEAN mRNA 596838 603456 0.99818 + . ID=CGI_10023252; scaffold408 GLEAN mRNA 604713 616487 0.990126 - . ID=CGI_10023253; scaffold408 TRF Tandem_Repeat 611603 611644 50 + . . scaffold408 GLEAN promoter 615242 616241 0.999959 + . ID=CGI_10023254; scaffold408 GLEAN mRNA 616242 625865 0.999959 + . ID=CGI_10023254; scaffold408 GLEAN promoter 616488 617487 0.990126 - . ID=CGI_10023253; scaffold408 TRF Tandem_Repeat 617814 617866 106 + . . scaffold408 TRF Tandem_Repeat 617866 617909 81 + . . scaffold408 TRF Tandem_Repeat 619230 619274 90 + . . scaffold408 TRF Tandem_Repeat 619274 619316 86 + . . scaffold408 TRF Tandem_Repeat 623660 623717 116 + . . scaffold408 TRF Tandem_Repeat 626688 626875 238 + . . scaffold408 TRF Tandem_Repeat 626767 626853 56 + . . scaffold408 GLEAN mRNA 627488 637893 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 629293 630037 1099 + . . scaffold408 TRF Tandem_Repeat 629365 629470 70 + . . scaffold408 TRF Tandem_Repeat 629520 629666 60 + . . scaffold408 TRF Tandem_Repeat 632313 632339 54 + . . scaffold408 TRF Tandem_Repeat 635838 636035 143 + . . scaffold408 TRF Tandem_Repeat 636035 636170 103 + . . scaffold408 TRF Tandem_Repeat 636172 636376 180 + . . scaffold408 TRF Tandem_Repeat 637725 637767 86 + . . scaffold408 GLEAN promoter 637894 638893 0.731449 - . ID=CGI_10023255; scaffold408 TRF Tandem_Repeat 638760 639593 776 + . . scaffold408 GLEAN mRNA 650779 661739 1 - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 651736 652071 158 + . . scaffold408 TRF Tandem_Repeat 655107 655477 107 + . . scaffold408 TRF Tandem_Repeat 655111 655483 258 + . . scaffold408 TRF Tandem_Repeat 655112 655453 117 + . . scaffold408 TRF Tandem_Repeat 655125 655477 207 + . . scaffold408 GLEAN promoter 661740 662739 1 - . ID=CGI_10023256; scaffold408 TRF Tandem_Repeat 662700 663049 340 + . . scaffold408 TRF Tandem_Repeat 662700 663049 451 + . . scaffold408 TRF Tandem_Repeat 662713 663059 275 + . . scaffold408 GLEAN promoter 665420 666419 0.865237 + . ID=CGI_10023257; scaffold408 GLEAN mRNA 666420 670264 0.865237 + . ID=CGI_10023257; scaffold408 GLEAN mRNA 672280 673273 0.998505 - . ID=CGI_10023258; scaffold408 GLEAN promoter 673274 674273 0.998505 - . ID=CGI_10023258; scaffold408 WUBlastX LINE_RTE-X 676457 676705 67 + . . scaffold408 WUBlastX LINE_RTE-X 676693 677367 135 + . . scaffold408 WUBlastX LINE_RTE-X 677880 678467 68 + . . scaffold408 WUBlastX LINE_L2 678381 678488 38 + . . scaffold408 WUBlastX LINE_RTE-X 678488 678574 56 + . . scaffold408 WUBlastX LINE_RTE-X 678580 679062 291 + . . scaffold408 WUBlastX LINE_L1 679075 679134 20 + . . scaffold408 WUBlastX LINE_RTE-X 679107 679595 299 + . . scaffold408 WUBlastX LINE_RTE-X 679140 679991 139 + . . scaffold408 WUBlastX LINE_RTE-X 679707 680105 128 + . . scaffold408 WUBlastX LINE_RTE-X 679797 680228 83 + . . scaffold408 TRF Tandem_Repeat 688617 688652 72 + . . scaffold408 GLEAN promoter 693082 694081 0.87307 + . ID=CGI_10023259; scaffold408 GLEAN mRNA 694082 702970 0.87307 + . ID=CGI_10023259; scaffold408 WUBlastX LINE_Penelope 716312 716944 239 - . . scaffold408 WUBlastX LINE_Penelope 716926 718293 519 - . . scaffold408 WUBlastX LINE_Penelope 717627 718523 229 - . . scaffold408 WUBlastX LINE_Penelope 718356 718607 41 - . . scaffold408 GLEAN mRNA 769718 769930 1 - . ID=CGI_10023260; scaffold408 GLEAN promoter 769720 770719 0.597499 + . ID=CGI_10023261; scaffold408 GLEAN promoter 769931 770930 1 - . ID=CGI_10023260; scaffold408 GLEAN mRNA 770720 770926 0.597499 + . ID=CGI_10023261; scaffold408 GLEAN promoter 772281 773280 0.550397 + . ID=CGI_10023262; scaffold408 GLEAN mRNA 773281 782803 0.550397 + . ID=CGI_10023262; scaffold408 GLEAN mRNA 784237 786113 0.531615 - . ID=CGI_10023263; scaffold408 GLEAN promoter 785852 786851 0.999991 + . ID=CGI_10023264; scaffold408 GLEAN promoter 786114 787113 0.531615 - . ID=CGI_10023263; scaffold408 GLEAN mRNA 786852 792323 0.999991 + . ID=CGI_10023264; scaffold408 TRF Tandem_Repeat 795479 795509 53 + . . scaffold408 GLEAN mRNA 804464 807405 1 - . ID=CGI_10023265; scaffold408 TRF Tandem_Repeat 804751 804781 53 + . . scaffold408 GLEAN promoter 807406 808405 1 - . ID=CGI_10023265; scaffold408 TRF Tandem_Repeat 813044 813076 66 + . . scaffold408 TRF Tandem_Repeat 817200 817251 88 + . . scaffold408 WUBlastX LINE_RTE-X 820429 820692 91 + . . scaffold408 TRF Tandem_Repeat 822713 822783 106 + . . scaffold40808 TRF Tandem_Repeat 896 952 114 + . . scaffold40808 GLEAN promoter 2849 3848 0.998547 + . ID=CGI_10004446; scaffold40808 GLEAN mRNA 3849 37030 0.998547 + . ID=CGI_10004446; scaffold40808 TRF Tandem_Repeat 4540 4580 82 + . . scaffold40808 TRF Tandem_Repeat 5676 5731 112 + . . scaffold40808 TRF Tandem_Repeat 14274 14340 62 + . . scaffold40808 TRF Tandem_Repeat 14274 14340 73 + . . scaffold40808 TRF Tandem_Repeat 16409 16472 128 + . . scaffold40808 TRF Tandem_Repeat 16650 16688 78 + . . scaffold40808 TRF Tandem_Repeat 17198 17264 53 + . . scaffold40808 TRF Tandem_Repeat 30276 30321 92 + . . scaffold40808 WUBlastX LTR_DIRS 41479 41898 211 + . . scaffold40808 TRF Tandem_Repeat 42095 42416 491 + . . scaffold40808 WUBlastX LTR_DIRS 42616 43611 479 + . . scaffold40808 WUBlastX LINE_CR1-L2 44014 44379 73 - . . scaffold40808 WUBlastX LINE_CR1-L2 44113 44508 58 - . . scaffold40808 WUBlastX LINE_CR1-L2 44116 44436 72 - . . scaffold40808 WUBlastX LINE_CR1-L2 44116 44379 94 - . . scaffold40808 TRF Tandem_Repeat 52845 52888 88 + . . scaffold40808 WUBlastX DNA_TcMar-Tc1 55001 55186 59 + . . scaffold40808 TRF Tandem_Repeat 56969 57016 96 + . . scaffold40808 WUBlastX LTR_DIRS 80410 80994 335 + . . scaffold40808 WUBlastX LTR_DIRS 81000 81512 180 + . . scaffold40808 WUBlastX LTR_DIRS 81230 82309 369 + . . scaffold40808 WUBlastX LTR_DIRS 81413 82312 389 + . . scaffold40808 TRF Tandem_Repeat 83661 83693 66 + . . scaffold40808 GLEAN mRNA 83784 85618 0.969769 - . ID=CGI_10004447; scaffold40808 GLEAN promoter 85619 86618 0.969769 - . ID=CGI_10004447; scaffold40808 TRF Tandem_Repeat 85672 85990 577 + . . scaffold40808 GLEAN mRNA 86443 94501 0.969748 - . ID=CGI_10004448; scaffold40808 TRF Tandem_Repeat 89152 89252 148 + . . scaffold40808 GLEAN promoter 94502 95501 0.969748 - . ID=CGI_10004448; scaffold40808 TRF Tandem_Repeat 96166 96308 250 + . . scaffold40808 GLEAN promoter 97395 98394 0.999994 + . ID=CGI_10004449; scaffold40808 GLEAN mRNA 98395 99545 0.999994 + . ID=CGI_10004449; scaffold40820 GLEAN promoter 2744 3743 0.968215 + . ID=CGI_10004471; scaffold40820 GLEAN mRNA 3744 15689 0.968215 + . ID=CGI_10004471; scaffold40820 GLEAN promoter 15607 16606 0.702157 + . ID=CGI_10004472; scaffold40820 GLEAN mRNA 16607 22069 0.702157 + . ID=CGI_10004472; scaffold40820 GLEAN promoter 23430 24429 0.993433 + . ID=CGI_10004473; scaffold40820 GLEAN mRNA 24430 31741 0.993433 + . ID=CGI_10004473; scaffold40820 TRF Tandem_Repeat 25903 26072 119 + . . scaffold40820 TRF Tandem_Repeat 26072 26247 208 + . . scaffold40820 TRF Tandem_Repeat 26088 26249 144 + . . scaffold40820 TRF Tandem_Repeat 26555 26599 90 + . . scaffold40820 TRF Tandem_Repeat 29966 30708 981 + . . scaffold40820 GLEAN mRNA 33192 37967 0.999394 - . ID=CGI_10004474; scaffold40820 GLEAN promoter 37968 38967 0.999394 - . ID=CGI_10004474; scaffold40820 GLEAN mRNA 40998 50606 0.999676 - . ID=CGI_10004475; scaffold40820 TRF Tandem_Repeat 45089 45213 92 + . . scaffold40820 GLEAN promoter 50607 51606 0.999676 - . ID=CGI_10004475; scaffold40820 GLEAN promoter 51034 52033 0.999964 + . ID=CGI_10004476; scaffold40820 GLEAN mRNA 52034 53797 0.999964 + . ID=CGI_10004476; scaffold40820 GLEAN promoter 54979 55978 1 + . ID=CGI_10004477; scaffold40820 GLEAN mRNA 55979 68758 1 + . ID=CGI_10004477; scaffold40820 TRF Tandem_Repeat 61783 62038 240 + . . scaffold40820 TRF Tandem_Repeat 61839 62080 139 + . . scaffold40820 GLEAN promoter 67915 68914 0.749468 + . ID=CGI_10004478; scaffold40820 GLEAN mRNA 68915 85567 0.749468 + . ID=CGI_10004478; scaffold40820 TRF Tandem_Repeat 83592 83636 90 + . . scaffold40820 GLEAN promoter 90515 91514 0.677543 + . ID=CGI_10004479; scaffold40820 GLEAN mRNA 91515 97875 0.677543 + . ID=CGI_10004479; scaffold40820 TRF Tandem_Repeat 96536 96816 273 + . . scaffold40820 WUBlastX DNA_Sola 99832 100485 111 - . . scaffold40820 WUBlastX DNA_Sola 99931 100491 139 - . . scaffold40822 GLEAN promoter 13429 14428 1 + . ID=CGI_10004480; scaffold40822 GLEAN mRNA 14429 15310 1 + . ID=CGI_10004480; scaffold40822 WUBlastX LINE_RTE-BovB 34556 34720 129 + . . scaffold40822 WUBlastX DNA_TcMar-Tc1 36172 36261 20 - . . scaffold40822 WUBlastX DNA_TcMar-Tc1 37049 37144 31 - . . scaffold40822 WUBlastX LINE_L1-Tx1 43386 44207 40 - . . scaffold40822 WUBlastX LINE_L1-Tx1 43425 43697 75 - . . scaffold40822 WUBlastX LINE_L1-Tx1 44215 44361 44 - . . scaffold40822 WUBlastX LINE_L1 44239 44373 50 - . . scaffold40822 WUBlastX LINE_L1-Tx1 44269 44361 62 - . . scaffold40822 WUBlastX LINE_L1 44443 44592 34 - . . scaffold40822 WUBlastX LINE_L1-Tx1 44470 44592 36 - . . scaffold40822 WUBlastX LINE_L1-Tx1 44488 44622 29 - . . scaffold40822 WUBlastX LINE_L1-Tx1 44491 44592 40 - . . scaffold40822 WUBlastX LINE_L1-Tx1 44494 44760 25 - . . scaffold40822 WUBlastX LINE_L1 44569 44691 29 - . . scaffold40822 WUBlastX LINE_L1-Tx1 44644 44703 41 - . . scaffold40822 WUBlastX LINE_L1-Tx1 45469 46158 142 - . . scaffold40822 WUBlastX LINE_L1-Tx1 45592 46161 202 - . . scaffold40822 TRF Tandem_Repeat 49917 50827 1203 + . . scaffold40822 TRF Tandem_Repeat 52780 55276 2875 + . . scaffold40822 WUBlastX DNA_Harbinger 60002 60184 38 + . . scaffold40822 WUBlastX DNA_Harbinger 60249 60464 56 + . . scaffold40822 GLEAN mRNA 61413 61730 0.859786 - . ID=CGI_10004481; scaffold40822 GLEAN promoter 61731 62730 0.859786 - . ID=CGI_10004481; scaffold40822 WUBlastX LTR_DIRS 68763 68885 40 + . . scaffold40822 WUBlastX LTR_DIRS 68880 68993 28 + . . scaffold40822 WUBlastX LTR_DIRS 69068 69271 85 + . . scaffold40822 WUBlastX LTR_DIRS 69187 69723 132 + . . scaffold40822 WUBlastX LTR_DIRS 69274 69708 160 + . . scaffold40822 WUBlastX LTR_Ngaro 85507 85866 120 - . . scaffold40822 WUBlastX LTR_Ngaro 85516 85797 133 - . . scaffold40822 WUBlastX LTR_Ngaro 85821 86063 87 - . . scaffold40822 WUBlastX LTR_Ngaro 86087 86473 69 - . . scaffold40822 WUBlastX LTR_Ngaro 86389 87246 341 - . . scaffold40822 WUBlastX LTR_Ngaro 86789 87931 410 - . . scaffold40822 WUBlastX LTR_Ngaro 88110 88793 211 - . . scaffold40822 WUBlastX LINE_CR1 90492 91250 26 + . . scaffold40822 WUBlastX LINE_CR1 90648 91310 35 + . . scaffold40822 WUBlastX LINE_RTE-X 90885 92414 219 + . . scaffold40822 WUBlastX LINE_RTE-X 92383 93030 333 + . . scaffold40822 WUBlastX LINE_RTE-X 93050 94090 295 + . . scaffold40822 TRF Tandem_Repeat 94443 94591 133 + . . scaffold40828 GLEAN promoter 5413 6412 0.996354 + . ID=CGI_10004501; scaffold40828 GLEAN mRNA 6413 22813 0.996354 + . ID=CGI_10004501; scaffold40828 GLEAN promoter 27348 28347 0.605765 + . ID=CGI_10004502; scaffold40828 GLEAN mRNA 28348 61048 0.605765 + . ID=CGI_10004502; scaffold40828 TRF Tandem_Repeat 42545 42575 53 + . . scaffold40828 TRF Tandem_Repeat 43118 43166 98 + . . scaffold40828 TRF Tandem_Repeat 43197 43235 55 + . . scaffold40828 WUBlastX LTR_Gypsy 56836 57096 48 - . . scaffold40828 WUBlastX LTR_Gypsy 56881 57060 55 - . . scaffold40828 WUBlastX LTR_Gypsy 56938 57057 66 - . . scaffold40828 WUBlastX LTR_Gypsy 56941 57114 61 - . . scaffold40828 WUBlastX LTR_Gypsy 57153 57287 23 - . . scaffold40828 WUBlastX LTR_Gypsy 57388 57657 39 - . . scaffold40828 WUBlastX LTR_Gypsy 57457 57801 53 - . . scaffold40828 WUBlastX LTR_Gypsy 57463 57657 64 - . . scaffold40828 WUBlastX LTR_Gypsy 57493 57660 91 - . . scaffold40828 WUBlastX LTR_Gypsy 57493 57741 87 - . . scaffold40828 WUBlastX LTR_Gypsy 57788 57934 20 - . . scaffold40828 WUBlastX LTR_Gypsy 57920 58102 25 - . . scaffold40828 TRF Tandem_Repeat 68831 68893 126 + . . scaffold40828 TRF Tandem_Repeat 99399 99490 96 + . . scaffold40828 TRF Tandem_Repeat 99569 99703 132 + . . scaffold40828 TRF Tandem_Repeat 99888 99981 116 + . . scaffold40828 TRF Tandem_Repeat 101298 101354 73 + . . scaffold40832 GLEAN promoter 521 1520 1 + . ID=CGI_10004450; scaffold40832 GLEAN mRNA 1521 3718 1 + . ID=CGI_10004450; scaffold40832 GLEAN promoter 3675 4674 0.382695 + . ID=CGI_10004451; scaffold40832 GLEAN mRNA 4675 13186 0.382695 + . ID=CGI_10004451; scaffold40832 TRF Tandem_Repeat 6295 6373 108 + . . scaffold40832 TRF Tandem_Repeat 8065 8126 115 + . . scaffold40832 GLEAN promoter 14335 15334 0.562409 + . ID=CGI_10004452; scaffold40832 GLEAN mRNA 15335 21842 0.562409 + . ID=CGI_10004452; scaffold40832 TRF Tandem_Repeat 15427 15478 68 + . . scaffold40832 TRF Tandem_Repeat 15427 15478 68 + . . scaffold40832 TRF Tandem_Repeat 15427 15478 68 + . . scaffold40832 TRF Tandem_Repeat 17523 17555 57 + . . scaffold40832 TRF Tandem_Repeat 18172 18205 68 + . . scaffold40832 GLEAN promoter 22822 23821 1 + . ID=CGI_10004453; scaffold40832 TRF Tandem_Repeat 23399 23435 74 + . . scaffold40832 GLEAN mRNA 23822 30847 1 + . ID=CGI_10004453; scaffold40832 TRF Tandem_Repeat 27255 27296 84 + . . scaffold40832 GLEAN promoter 31030 32029 0.998954 + . ID=CGI_10004454; scaffold40832 GLEAN mRNA 32030 40719 0.998954 + . ID=CGI_10004454; scaffold40832 GLEAN mRNA 43770 54340 1 - . ID=CGI_10004455; scaffold40832 GLEAN promoter 48253 49252 0.999998 + . ID=CGI_10004456; scaffold40832 GLEAN mRNA 49253 51343 0.999998 + . ID=CGI_10004456; scaffold40832 GLEAN promoter 50373 51372 0.350561 + . ID=CGI_10004457; scaffold40832 GLEAN mRNA 51373 82869 0.350561 + . ID=CGI_10004457; scaffold40832 GLEAN promoter 54341 55340 1 - . ID=CGI_10004455; scaffold40832 GLEAN mRNA 55298 64398 0.999808 - . ID=CGI_10004458; scaffold40832 GLEAN promoter 64399 65398 0.999808 - . ID=CGI_10004458; scaffold40832 WUBlastX LINE_I 79602 79667 23 - . . scaffold40832 WUBlastX LINE_RTE-X 79819 81663 840 - . . scaffold40832 WUBlastX LINE_RTE-BovB 81845 81904 25 - . . scaffold40832 GLEAN promoter 81969 82968 1 + . ID=CGI_10004459; scaffold40832 WUBlastX LINE_RTE-X 82546 82632 22 - . . scaffold40832 WUBlastX LINE_L1-Tx1 82561 82635 23 - . . scaffold40832 GLEAN mRNA 82969 97174 1 + . ID=CGI_10004459; scaffold40832 TRF Tandem_Repeat 89172 89224 70 + . . scaffold40832 TRF Tandem_Repeat 97888 97980 186 + . . scaffold40836 GLEAN mRNA 12703 33360 0.84237 - . ID=CGI_10004482; scaffold40836 TRF Tandem_Repeat 22400 22448 98 + . . scaffold40836 TRF Tandem_Repeat 29992 31240 1790 + . . scaffold40836 TRF Tandem_Repeat 32664 32709 67 + . . scaffold40836 GLEAN promoter 33361 34360 0.84237 - . ID=CGI_10004482; scaffold40836 TRF Tandem_Repeat 38036 38062 54 + . . scaffold40836 GLEAN promoter 39594 40593 1 + . ID=CGI_10004483; scaffold40836 GLEAN mRNA 40594 45393 1 + . ID=CGI_10004483; scaffold40836 TRF Tandem_Repeat 46559 47587 1045 + . . scaffold40836 GLEAN promoter 51553 52552 1 + . ID=CGI_10004484; scaffold40836 GLEAN mRNA 52553 53162 1 + . ID=CGI_10004484; scaffold40836 WUBlastX LINE_RTE-X 56408 56635 26 - . . scaffold40836 GLEAN promoter 57231 58230 0.863777 + . ID=CGI_10004485; scaffold40836 GLEAN mRNA 58231 70939 0.863777 + . ID=CGI_10004485; scaffold40836 TRF Tandem_Repeat 63304 63779 283 + . . scaffold40836 GLEAN promoter 71804 72803 0.761779 + . ID=CGI_10004486; scaffold40836 GLEAN mRNA 72804 93923 0.761779 + . ID=CGI_10004486; scaffold40836 WUBlastX LINE_L2 81304 81825 100 - . . scaffold40836 WUBlastX LINE_CR1-L2 81789 81959 29 - . . scaffold40836 WUBlastX LINE_L2 81905 82570 154 - . . scaffold40836 WUBlastX LINE_CR1-L2 82549 82692 87 - . . scaffold40836 WUBlastX LINE_CR1-L2 82564 82719 68 - . . scaffold40836 WUBlastX LINE_RTE-X 83613 83753 26 - . . scaffold40836 WUBlastX LINE_RTE-X 83992 84363 115 - . . scaffold40836 WUBlastX LINE_RTE-X 84079 84525 77 - . . scaffold40836 WUBlastX LINE_RTE-X 84332 84646 41 - . . scaffold40836 WUBlastX LINE_RTE-X 84636 85307 389 - . . scaffold40836 WUBlastX LINE_RTE-X 85309 86283 418 - . . scaffold40836 WUBlastX LINE_Dong-R4 86282 86470 53 - . . scaffold40836 WUBlastX LINE_RTE-X 86315 86479 96 - . . scaffold40836 WUBlastX LINE_RTE-X 86315 86563 83 - . . scaffold40836 WUBlastX LINE_RTE-X 86542 86949 205 - . . scaffold40836 WUBlastX LINE_L2 86542 87051 43 - . . scaffold40836 WUBlastX LINE_CR1 87214 87477 45 - . . scaffold40836 WUBlastX LINE_L2 87262 87483 59 - . . scaffold40836 WUBlastX LINE_RTE-X 87304 87486 135 - . . scaffold40836 WUBlastX LINE_L2 87328 87537 33 - . . scaffold40836 WUBlastX LINE_RTE-X 87513 87587 27 - . . scaffold40836 WUBlastX LINE_RTE-X 87760 87981 20 - . . scaffold40836 WUBlastX LINE_I 87916 88005 32 - . . scaffold40836 WUBlastX LINE_L1 88283 88333 30 - . . scaffold40836 GLEAN mRNA 91015 99994 1 - . ID=CGI_10004487; scaffold40836 GLEAN promoter 99995 100807 1 - . ID=CGI_10004487; scaffold40856 TRF Tandem_Repeat 2375 2432 107 + . . scaffold40856 GLEAN promoter 18200 19199 0.999315 + . ID=CGI_10004523; scaffold40856 GLEAN mRNA 19200 48932 0.999315 + . ID=CGI_10004523; scaffold40856 TRF Tandem_Repeat 22352 22468 144 + . . scaffold40856 TRF Tandem_Repeat 23094 23378 304 + . . scaffold40856 TRF Tandem_Repeat 23094 23377 235 + . . scaffold40856 TRF Tandem_Repeat 31939 31994 71 + . . scaffold40856 TRF Tandem_Repeat 31943 31997 65 + . . scaffold40856 GLEAN mRNA 47747 49225 0.694107 - . ID=CGI_10004524; scaffold40856 GLEAN promoter 49226 50225 0.694107 - . ID=CGI_10004524; scaffold40856 TRF Tandem_Repeat 52175 52207 66 + . . scaffold40856 TRF Tandem_Repeat 52446 52477 64 + . . scaffold40856 TRF Tandem_Repeat 52642 52705 128 + . . scaffold40856 TRF Tandem_Repeat 54766 54808 86 + . . scaffold40856 TRF Tandem_Repeat 56227 56265 78 + . . scaffold40856 TRF Tandem_Repeat 56545 56579 70 + . . scaffold40856 TRF Tandem_Repeat 58060 58131 112 + . . scaffold40856 TRF Tandem_Repeat 65616 65661 92 + . . scaffold40856 TRF Tandem_Repeat 68145 68196 104 + . . scaffold40856 TRF Tandem_Repeat 69077 69138 90 + . . scaffold40856 WUBlastX DNA_Maverick 70875 71168 173 + . . scaffold40856 GLEAN promoter 72077 73076 0.531284 + . ID=CGI_10004525; scaffold40856 GLEAN mRNA 73077 75045 0.531284 + . ID=CGI_10004525; scaffold40856 WUBlastX LINE_Penelope 76223 76804 136 - . . scaffold40856 WUBlastX LINE_Penelope 76800 77354 231 - . . scaffold40856 GLEAN promoter 80602 81601 0.835966 + . ID=CGI_10004526; scaffold40856 GLEAN mRNA 81602 82903 0.835966 + . ID=CGI_10004526; scaffold40856 WUBlastX LINE_RTE-X 84076 84390 196 + . . scaffold40856 WUBlastX LINE_RTE-X 84076 84711 148 + . . scaffold40856 WUBlastX LINE_RTE-X 84720 84977 91 + . . scaffold40856 WUBlastX LINE_RTE-X 84720 84926 101 + . . scaffold40856 GLEAN mRNA 85567 90161 0.999595 - . ID=CGI_10004527; scaffold40856 TRF Tandem_Repeat 89947 89998 104 + . . scaffold40856 GLEAN promoter 90162 91161 0.999595 - . ID=CGI_10004527; scaffold40856 TRF Tandem_Repeat 90855 90902 96 + . . scaffold40856 TRF Tandem_Repeat 94534 94572 78 + . . scaffold40856 TRF Tandem_Repeat 100191 100233 86 + . . scaffold40868 GLEAN mRNA 2268 3385 1 - . ID=CGI_10004528; scaffold40868 GLEAN promoter 3362 4361 0.258955 + . ID=CGI_10004529; scaffold40868 GLEAN promoter 3386 4385 1 - . ID=CGI_10004528; scaffold40868 GLEAN mRNA 4362 16371 0.258955 + . ID=CGI_10004529; scaffold40868 TRF Tandem_Repeat 11995 12052 116 + . . scaffold40868 TRF Tandem_Repeat 37499 37577 124 + . . scaffold40868 TRF Tandem_Repeat 41900 41943 88 + . . scaffold40868 WUBlastX LINE_L1 65600 65938 135 + . . scaffold40868 WUBlastX LINE_RTE-X 65946 66893 341 + . . scaffold40868 GLEAN promoter 68041 69040 0.389052 + . ID=CGI_10004530; scaffold40868 GLEAN mRNA 69041 85127 0.389052 + . ID=CGI_10004530; scaffold40868 GLEAN promoter 89380 90379 0.368692 + . ID=CGI_10004531; scaffold40868 GLEAN mRNA 90380 99041 0.368692 + . ID=CGI_10004531; scaffold40874 GLEAN promoter 2985 3984 1 + . ID=CGI_10004434; scaffold40874 GLEAN mRNA 3985 6600 1 + . ID=CGI_10004434; scaffold40874 TRF Tandem_Repeat 14669 14725 87 + . . scaffold40874 TRF Tandem_Repeat 19989 20039 75 + . . scaffold40874 TRF Tandem_Repeat 21761 21833 137 + . . scaffold40874 TRF Tandem_Repeat 21940 21977 76 + . . scaffold40874 GLEAN promoter 25122 26121 1 + . ID=CGI_10004435; scaffold40874 GLEAN mRNA 26122 26661 1 + . ID=CGI_10004435; scaffold40874 GLEAN mRNA 27994 31595 1 - . ID=CGI_10004436; scaffold40874 GLEAN promoter 31596 32595 1 - . ID=CGI_10004436; scaffold40874 GLEAN promoter 32932 33931 0.729144 + . ID=CGI_10004437; scaffold40874 GLEAN mRNA 33932 68867 0.729144 + . ID=CGI_10004437; scaffold40874 TRF Tandem_Repeat 34135 34168 68 + . . scaffold40874 TRF Tandem_Repeat 37988 38027 57 + . . scaffold40874 TRF Tandem_Repeat 44103 44165 81 + . . scaffold40874 TRF Tandem_Repeat 44112 44165 90 + . . scaffold40874 TRF Tandem_Repeat 50771 51697 1746 + . . scaffold40874 TRF Tandem_Repeat 55387 55589 304 + . . scaffold40874 TRF Tandem_Repeat 56601 57279 861 + . . scaffold40874 TRF Tandem_Repeat 63124 63650 594 + . . scaffold40874 TRF Tandem_Repeat 63124 63645 614 + . . scaffold40874 TRF Tandem_Repeat 66631 68383 2986 + . . scaffold40874 GLEAN promoter 68114 69113 0.188483 + . ID=CGI_10004438; scaffold40874 GLEAN mRNA 69114 99157 0.188483 + . ID=CGI_10004438; scaffold40874 TRF Tandem_Repeat 70106 70847 1385 + . . scaffold40874 TRF Tandem_Repeat 72849 72896 69 + . . scaffold40874 TRF Tandem_Repeat 77450 77906 779 + . . scaffold40874 TRF Tandem_Repeat 79832 79918 77 + . . scaffold40874 WUBlastX LINE_L1-Tx1 80491 80928 132 - . . scaffold40874 TRF Tandem_Repeat 89615 89679 130 + . . scaffold40874 TRF Tandem_Repeat 89965 89999 70 + . . scaffold40874 TRF Tandem_Repeat 91048 92702 2007 + . . scaffold40874 TRF Tandem_Repeat 96666 96828 251 + . . scaffold40894 TRF Tandem_Repeat 3165 3483 278 + . . scaffold40894 GLEAN promoter 19214 20213 0.41206 + . ID=CGI_10004536; scaffold40894 GLEAN mRNA 20214 44382 0.41206 + . ID=CGI_10004536; scaffold40894 GLEAN mRNA 20327 33831 0.997159 - . ID=CGI_10004537; scaffold40894 GLEAN promoter 33832 34831 0.997159 - . ID=CGI_10004537; scaffold40894 TRF Tandem_Repeat 34366 34718 690 + . . scaffold40894 WUBlastX DNA_En-Spm 34846 35241 168 - . . scaffold40894 TRF Tandem_Repeat 37065 37106 84 + . . scaffold40894 GLEAN promoter 43869 44868 1 + . ID=CGI_10004538; scaffold40894 GLEAN mRNA 44869 65614 1 + . ID=CGI_10004538; scaffold40894 WUBlastX DNA_hAT 50173 51843 558 + . . scaffold40894 GLEAN mRNA 56039 76872 0.654496 - . ID=CGI_10004539; scaffold40894 TRF Tandem_Repeat 56741 56804 101 + . . scaffold40894 TRF Tandem_Repeat 68516 69872 2023 + . . scaffold40894 TRF Tandem_Repeat 70034 70075 50 + . . scaffold40894 GLEAN promoter 76873 77872 0.654496 - . ID=CGI_10004539; scaffold40894 GLEAN promoter 80987 81986 0.649145 + . ID=CGI_10004540; scaffold40894 TRF Tandem_Repeat 81700 81731 64 + . . scaffold40894 GLEAN mRNA 81987 82556 0.649145 + . ID=CGI_10004540; scaffold40894 TRF Tandem_Repeat 84322 84350 58 + . . scaffold40894 GLEAN mRNA 88006 100838 0.998256 - . ID=CGI_10004541; scaffold40894 WUBlastX DNA_Kolobok 97251 98324 102 - . . scaffold40894 GLEAN promoter 100839 101838 0.998256 - . ID=CGI_10004541; scaffold40894 WUBlastX LINE_CR1-L2 102694 103221 121 - . . scaffold409 GLEAN promoter 1 585 1 + . ID=CGI_10004315; scaffold409 GLEAN mRNA 586 2037 1 + . ID=CGI_10004315; scaffold409 TRF Tandem_Repeat 4140 4181 84 + . . scaffold409 GLEAN mRNA 10598 12161 0.988959 - . ID=CGI_10004316; scaffold409 GLEAN promoter 12162 13161 0.988959 - . ID=CGI_10004316; scaffold409 TRF Tandem_Repeat 14457 14500 88 + . . scaffold409 TRF Tandem_Repeat 15201 15250 100 + . . scaffold409 TRF Tandem_Repeat 20889 21233 446 + . . scaffold409 TRF Tandem_Repeat 33819 33949 181 + . . scaffold409 WUBlastX DNA_TcMar-Tc1 41952 42221 114 - . . scaffold409 WUBlastX DNA_TcMar-Tc1 41955 42422 71 - . . scaffold409 WUBlastX LINE_CR1 47158 47469 53 - . . scaffold409 WUBlastX LINE_L2 47521 47646 29 - . . scaffold409 TRF Tandem_Repeat 48413 48471 104 + . . scaffold409 GLEAN promoter 50142 51141 0.990811 + . ID=CGI_10004317; scaffold409 GLEAN mRNA 51142 66968 0.990811 + . ID=CGI_10004317; scaffold409 TRF Tandem_Repeat 59293 59337 90 + . . scaffold409 WUBlastX DNA_TcMar-Marin 60209 60439 57 + . . scaffold409 WUBlastX DNA_TcMar-Marin 60242 60427 96 + . . scaffold409 WUBlastX DNA_TcMar-Marin 60454 60624 74 + . . scaffold409 WUBlastX DNA_TcMar-Marin 60555 60911 168 + . . scaffold409 WUBlastX DNA_TcMar-Marin 60615 60902 191 + . . scaffold409 WUBlastX DNA_TcMar-Marin 61093 61497 234 + . . scaffold409 GLEAN promoter 68180 69179 1 + . ID=CGI_10004318; scaffold409 GLEAN mRNA 69180 77038 1 + . ID=CGI_10004318; scaffold409 TRF Tandem_Repeat 72288 72653 570 + . . scaffold409 GLEAN mRNA 76958 91978 0.642495 - . ID=CGI_10004319; scaffold409 WUBlastX LTR_Gypsy 84136 84660 29 - . . scaffold409 TRF Tandem_Repeat 90440 90481 84 + . . scaffold409 GLEAN promoter 91979 92978 0.642495 - . ID=CGI_10004319; scaffold409 TRF Tandem_Repeat 92371 92410 80 + . . scaffold40910 TRF Tandem_Repeat 1 204 311 + . . scaffold40910 TRF Tandem_Repeat 579 767 306 + . . scaffold40910 TRF Tandem_Repeat 834 1100 462 + . . scaffold40910 TRF Tandem_Repeat 1328 1375 96 + . . scaffold40910 TRF Tandem_Repeat 2864 3736 1316 + . . scaffold40910 GLEAN mRNA 7660 12089 1 - . ID=CGI_10004542; scaffold40910 TRF Tandem_Repeat 11725 11760 72 + . . scaffold40910 GLEAN promoter 12090 13089 1 - . ID=CGI_10004542; scaffold40910 GLEAN promoter 15775 16774 0.99966 + . ID=CGI_10004543; scaffold40910 GLEAN mRNA 16775 17623 0.99966 + . ID=CGI_10004543; scaffold40910 GLEAN promoter 20906 21905 0.999948 + . ID=CGI_10004544; scaffold40910 GLEAN mRNA 21906 27180 0.999948 + . ID=CGI_10004544; scaffold40910 WUBlastX LINE_I 25423 25554 37 + . . scaffold40910 WUBlastX LINE_I 25798 25929 26 + . . scaffold40910 TRF Tandem_Repeat 33499 33543 81 + . . scaffold40910 GLEAN promoter 35811 36810 1 + . ID=CGI_10004545; scaffold40910 GLEAN mRNA 36811 39025 1 + . ID=CGI_10004545; scaffold40910 GLEAN mRNA 39963 73595 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 40979 41009 53 + . . scaffold40910 TRF Tandem_Repeat 45053 45152 102 + . . scaffold40910 TRF Tandem_Repeat 45056 45152 106 + . . scaffold40910 TRF Tandem_Repeat 55257 55619 649 + . . scaffold40910 TRF Tandem_Repeat 56252 58213 2860 + . . scaffold40910 TRF Tandem_Repeat 56252 58213 2908 + . . scaffold40910 TRF Tandem_Repeat 60033 60057 50 + . . scaffold40910 TRF Tandem_Repeat 61430 61589 108 + . . scaffold40910 TRF Tandem_Repeat 65493 65666 330 + . . scaffold40910 GLEAN promoter 68953 69952 1 + . ID=CGI_10004547; scaffold40910 GLEAN mRNA 69953 82983 1 + . ID=CGI_10004547; scaffold40910 TRF Tandem_Repeat 72783 72989 414 + . . scaffold40910 GLEAN promoter 73596 74595 0.392975 - . ID=CGI_10004546; scaffold40910 TRF Tandem_Repeat 73859 74506 1107 + . . scaffold40910 TRF Tandem_Repeat 80037 80654 988 + . . scaffold40910 TRF Tandem_Repeat 80037 80654 970 + . . scaffold40910 GLEAN mRNA 80831 88229 0.499789 - . ID=CGI_10004548; scaffold40910 TRF Tandem_Repeat 82084 82459 581 + . . scaffold40910 GLEAN promoter 87674 88673 0.999673 + . ID=CGI_10004549; scaffold40910 GLEAN promoter 88230 89229 0.499789 - . ID=CGI_10004548; scaffold40910 GLEAN mRNA 88674 96614 0.999673 + . ID=CGI_10004549; scaffold40910 TRF Tandem_Repeat 88871 88909 78 + . . scaffold40910 TRF Tandem_Repeat 91871 92044 279 + . . scaffold40910 TRF Tandem_Repeat 91894 92027 85 + . . scaffold40910 TRF Tandem_Repeat 92891 92935 90 + . . scaffold40910 GLEAN mRNA 97725 101132 1 - . ID=CGI_10004550; scaffold40910 GLEAN promoter 101133 102132 1 - . ID=CGI_10004550; scaffold40916 GLEAN promoter 4250 5249 0.246631 + . ID=CGI_10004570; scaffold40916 GLEAN mRNA 5250 52256 0.246631 + . ID=CGI_10004570; scaffold40916 GLEAN mRNA 23162 29323 0.499838 - . ID=CGI_10004571; scaffold40916 TRF Tandem_Repeat 25027 25060 50 + . . scaffold40916 GLEAN promoter 29324 30323 0.499838 - . ID=CGI_10004571; scaffold40916 WUBlastX LINE_L2 38182 38928 80 + . . scaffold40916 TRF Tandem_Repeat 38278 38330 70 + . . scaffold40916 WUBlastX LINE_L2 38428 38901 95 + . . scaffold40916 WUBlastX LINE_L1-Tx1 39214 39924 493 + . . scaffold40916 WUBlastX LINE_L1 39879 39992 27 + . . scaffold40916 WUBlastX LINE_L1-Tx1 39960 42962 1372 + . . scaffold40916 TRF Tandem_Repeat 51898 51928 62 + . . scaffold40916 TRF Tandem_Repeat 55167 56459 1272 + . . scaffold40916 GLEAN mRNA 57096 59491 0.999375 - . ID=CGI_10004572; scaffold40916 GLEAN promoter 59374 60373 1 + . ID=CGI_10004573; scaffold40916 GLEAN promoter 59492 60491 0.999375 - . ID=CGI_10004572; scaffold40916 GLEAN mRNA 60374 63069 1 + . ID=CGI_10004573; scaffold40916 TRF Tandem_Repeat 63488 63583 120 + . . scaffold40916 TRF Tandem_Repeat 63667 63730 62 + . . scaffold40916 GLEAN mRNA 64388 73182 0.996236 - . ID=CGI_10004574; scaffold40916 WUBlastX LINE_RTE-X 68217 68879 173 - . . scaffold40916 GLEAN promoter 72660 73659 0.811443 + . ID=CGI_10004575; scaffold40916 GLEAN promoter 73183 74182 0.996236 - . ID=CGI_10004574; scaffold40916 GLEAN mRNA 73660 81060 0.811443 + . ID=CGI_10004575; scaffold40916 TRF Tandem_Repeat 77265 77389 214 + . . scaffold40916 GLEAN mRNA 80895 85375 1 - . ID=CGI_10004576; scaffold40916 GLEAN promoter 85376 86375 1 - . ID=CGI_10004576; scaffold40916 GLEAN mRNA 86282 96339 0.933837 - . ID=CGI_10004577; scaffold40916 TRF Tandem_Repeat 86871 86900 60 + . . scaffold40916 TRF Tandem_Repeat 88930 88979 82 + . . scaffold40916 TRF Tandem_Repeat 89045 89077 66 + . . scaffold40916 TRF Tandem_Repeat 92859 93851 1245 + . . scaffold40916 TRF Tandem_Repeat 92859 93865 1216 + . . scaffold40916 GLEAN promoter 96340 97339 0.933837 - . ID=CGI_10004577; scaffold40928 TRF Tandem_Repeat 214 274 113 + . . scaffold40928 TRF Tandem_Repeat 6418 7504 1443 + . . scaffold40928 GLEAN mRNA 38151 71042 0.78306 - . ID=CGI_10004558; scaffold40928 WUBlastX LINE_LOA 39700 39825 25 + . . scaffold40928 WUBlastX LINE_CR1 39760 39825 40 + . . scaffold40928 WUBlastX LINE_CR1 39772 40593 90 + . . scaffold40928 WUBlastX LINE_CR1 40031 40243 119 + . . scaffold40928 WUBlastX LINE_CR1 40189 40599 230 + . . scaffold40928 WUBlastX LINE_CR1 40258 40599 256 + . . scaffold40928 WUBlastX LINE_CR1 40261 40704 152 + . . scaffold40928 WUBlastX LINE_CR1 40607 40849 65 + . . scaffold40928 WUBlastX LINE_CR1 40616 40807 77 + . . scaffold40928 WUBlastX LINE_CR1 40616 40774 101 + . . scaffold40928 WUBlastX LINE_CR1 40924 41166 71 + . . scaffold40928 WUBlastX LINE_CR1 40963 41166 124 + . . scaffold40928 WUBlastX LINE_CR1 41005 41241 76 + . . scaffold40928 TRF Tandem_Repeat 43171 43223 60 + . . scaffold40928 TRF Tandem_Repeat 52707 52733 54 + . . scaffold40928 WUBlastX DNA_Kolobok 64910 65299 49 + . . scaffold40928 WUBlastX DNA_Kolobok 64952 65281 100 + . . scaffold40928 WUBlastX DNA_Kolobok 65942 66136 76 - . . scaffold40928 WUBlastX DNA_Kolobok 67073 67312 133 - . . scaffold40928 WUBlastX DNA_Kolobok 67787 68047 25 - . . scaffold40928 WUBlastX LINE_RTE-X 68906 69223 55 + . . scaffold40928 GLEAN promoter 71043 72042 0.78306 - . ID=CGI_10004558; scaffold40928 TRF Tandem_Repeat 80511 80555 90 + . . scaffold40928 GLEAN promoter 102416 103415 0.69447 + . ID=CGI_10004559; scaffold40928 GLEAN mRNA 103416 103649 0.69447 + . ID=CGI_10004559; scaffold40938 TRF Tandem_Repeat 436 483 60 + . . scaffold40938 TRF Tandem_Repeat 446 482 58 + . . scaffold40938 TRF Tandem_Repeat 2369 2393 50 + . . scaffold40938 WUBlastX LINE_L1-Tx1 4747 5196 32 - . . scaffold40938 WUBlastX LINE_L1-Tx1 4822 5196 45 - . . scaffold40938 WUBlastX LINE_L1-Tx1 4936 5706 71 - . . scaffold40938 WUBlastX LINE_L1-Tx1 5084 5452 73 - . . scaffold40938 WUBlastX LINE_L1 5186 5500 81 - . . scaffold40938 WUBlastX LINE_L1 5186 5416 96 - . . scaffold40938 WUBlastX LINE_L1 5548 5784 26 - . . scaffold40938 WUBlastX LINE_L1-Tx1 6029 7144 239 - . . scaffold40938 WUBlastX LINE_L1 6674 7252 83 - . . scaffold40938 TRF Tandem_Repeat 22498 22561 128 + . . scaffold40938 TRF Tandem_Repeat 26611 26685 132 + . . scaffold40938 TRF Tandem_Repeat 35152 35868 942 + . . scaffold40938 TRF Tandem_Repeat 35870 36632 1129 + . . scaffold40938 TRF Tandem_Repeat 36637 36688 50 + . . scaffold40938 GLEAN mRNA 37735 39104 0.796164 - . ID=CGI_10004532; scaffold40938 GLEAN promoter 39105 40104 0.796164 - . ID=CGI_10004532; scaffold40938 TRF Tandem_Repeat 39547 41681 2211 + . . scaffold40938 TRF Tandem_Repeat 42714 43098 271 + . . scaffold40938 TRF Tandem_Repeat 42715 43100 356 + . . scaffold40938 TRF Tandem_Repeat 42759 43100 347 + . . scaffold40938 TRF Tandem_Repeat 43424 43618 246 + . . scaffold40938 GLEAN promoter 55698 56697 1 + . ID=CGI_10004533; scaffold40938 GLEAN mRNA 56698 64510 1 + . ID=CGI_10004533; scaffold40938 TRF Tandem_Repeat 73037 73750 1082 + . . scaffold40938 GLEAN mRNA 73815 81535 1 - . ID=CGI_10004534; scaffold40938 TRF Tandem_Repeat 74842 76062 823 + . . scaffold40938 TRF Tandem_Repeat 74902 76067 957 + . . scaffold40938 TRF Tandem_Repeat 80479 80951 739 + . . scaffold40938 GLEAN promoter 81536 82535 1 - . ID=CGI_10004534; scaffold40938 GLEAN promoter 82835 83834 0.984055 + . ID=CGI_10004535; scaffold40938 GLEAN mRNA 83835 99838 0.984055 + . ID=CGI_10004535; scaffold40938 TRF Tandem_Repeat 85779 85895 234 + . . scaffold40938 TRF Tandem_Repeat 85797 85895 63 + . . scaffold40938 TRF Tandem_Repeat 90281 90398 78 + . . scaffold40938 TRF Tandem_Repeat 91284 91412 117 + . . scaffold40938 TRF Tandem_Repeat 92143 92464 276 + . . scaffold40938 TRF Tandem_Repeat 92941 93510 971 + . . scaffold40938 TRF Tandem_Repeat 95241 95979 1221 + . . scaffold40938 TRF Tandem_Repeat 95283 95391 80 + . . scaffold40948 GLEAN mRNA 4134 5600 0.996819 - . ID=CGI_10004608; scaffold40948 GLEAN promoter 5601 6600 0.996819 - . ID=CGI_10004608; scaffold40948 GLEAN mRNA 13257 15200 0.593391 - . ID=CGI_10004609; scaffold40948 GLEAN promoter 15201 16200 0.593391 - . ID=CGI_10004609; scaffold40948 GLEAN mRNA 20895 33912 0.999675 - . ID=CGI_10004610; scaffold40948 WUBlastX LINE_L1 27686 27766 25 - . . scaffold40948 GLEAN promoter 33913 34912 0.999675 - . ID=CGI_10004610; scaffold40948 GLEAN promoter 36258 37257 0.999075 + . ID=CGI_10004611; scaffold40948 GLEAN mRNA 37258 52785 0.999075 + . ID=CGI_10004611; scaffold40948 TRF Tandem_Repeat 44681 44914 181 + . . scaffold40948 TRF Tandem_Repeat 44713 44908 144 + . . scaffold40948 TRF Tandem_Repeat 44752 44914 177 + . . scaffold40948 TRF Tandem_Repeat 60004 60041 67 + . . scaffold40948 GLEAN promoter 70092 71091 1 + . ID=CGI_10004612; scaffold40948 GLEAN mRNA 71092 79808 1 + . ID=CGI_10004612; scaffold40948 GLEAN promoter 82628 83627 0.536967 + . ID=CGI_10004613; scaffold40948 GLEAN mRNA 83628 99922 0.536967 + . ID=CGI_10004613; scaffold40948 WUBlastX LINE_CR1-L2 98627 99028 110 + . . scaffold40948 WUBlastX LINE_L2 98630 99130 81 + . . scaffold40948 WUBlastX LINE_Penelope 101065 101745 175 + . . scaffold40948 WUBlastX LTR_Pao 102685 104412 1120 - . . scaffold40948 WUBlastX LTR_Pao 102688 104028 1187 - . . scaffold40948 WUBlastX LTR_Pao 104412 104843 397 - . . scaffold40948 WUBlastX LTR_Pao 104840 105640 698 - . . scaffold40950 GLEAN mRNA 2523 4467 0.734544 - . ID=CGI_10004588; scaffold40950 GLEAN promoter 4468 5467 0.734544 - . ID=CGI_10004588; scaffold40950 TRF Tandem_Repeat 32117 32153 74 + . . scaffold40950 TRF Tandem_Repeat 32852 32895 88 + . . scaffold40950 TRF Tandem_Repeat 32973 33029 114 + . . scaffold40950 GLEAN mRNA 34365 36017 0.777732 - . ID=CGI_10004589; scaffold40950 GLEAN promoter 36018 37017 0.777732 - . ID=CGI_10004589; scaffold40950 GLEAN mRNA 45067 69137 1 - . ID=CGI_10004590; scaffold40950 TRF Tandem_Repeat 63362 63411 55 + . . scaffold40950 TRF Tandem_Repeat 63811 63861 102 + . . scaffold40950 WUBlastX LINE_RTE-X 64186 64377 78 + . . scaffold40950 WUBlastX LINE_RTE-X 64204 64323 80 + . . scaffold40950 TRF Tandem_Repeat 65876 65929 65 + . . scaffold40950 GLEAN promoter 69138 70137 1 - . ID=CGI_10004590; scaffold40950 TRF Tandem_Repeat 79897 79948 67 + . . scaffold40950 TRF Tandem_Repeat 82332 82687 547 + . . scaffold40950 TRF Tandem_Repeat 83085 83622 882 + . . scaffold40950 TRF Tandem_Repeat 83273 83631 135 + . . scaffold40950 TRF Tandem_Repeat 83643 84037 246 + . . scaffold40950 TRF Tandem_Repeat 88609 88652 70 + . . scaffold40950 TRF Tandem_Repeat 88683 89750 1527 + . . scaffold40950 WUBlastX LINE_RTE-X 93313 93648 121 - . . scaffold40950 GLEAN promoter 97977 98976 0.889761 + . ID=CGI_10004591; scaffold40950 GLEAN mRNA 98977 100564 0.889761 + . ID=CGI_10004591; scaffold40950 GLEAN mRNA 102776 104002 1 - . ID=CGI_10004592; scaffold40950 GLEAN promoter 104003 104897 1 - . ID=CGI_10004592; scaffold40952 TRF Tandem_Repeat 1458 1488 62 + . . scaffold40952 WUBlastX LINE_Penelope 1518 1895 127 + . . scaffold40952 WUBlastX LINE_Penelope 1910 2008 52 + . . scaffold40952 WUBlastX LINE_CR1-L2 14123 14218 30 + . . scaffold40952 WUBlastX LINE_CR1-L2 14148 14405 27 + . . scaffold40952 WUBlastX LINE_CR1-L2 14241 14378 50 + . . scaffold40952 TRF Tandem_Repeat 23878 23922 90 + . . scaffold40952 WUBlastX DNA_Kolobok 30184 30843 102 + . . scaffold40952 TRF Tandem_Repeat 34307 34353 51 + . . scaffold40952 TRF Tandem_Repeat 34550 34662 75 + . . scaffold40952 TRF Tandem_Repeat 35897 36006 195 + . . scaffold40952 GLEAN mRNA 40889 50889 0.998912 - . ID=CGI_10004593; scaffold40952 TRF Tandem_Repeat 43862 43905 63 + . . scaffold40952 TRF Tandem_Repeat 44307 44337 62 + . . scaffold40952 GLEAN promoter 50890 51889 0.998912 - . ID=CGI_10004593; scaffold40952 GLEAN promoter 54267 55266 0.797605 + . ID=CGI_10004594; scaffold40952 GLEAN mRNA 55267 57538 0.797605 + . ID=CGI_10004594; scaffold40952 WUBlastX DNA_Kolobok-Hyd 56413 56466 25 + . . scaffold40952 WUBlastX DNA_Kolobok-Hyd 56541 56747 26 + . . scaffold40952 TRF Tandem_Repeat 59970 60010 82 + . . scaffold40952 TRF Tandem_Repeat 67890 67918 58 + . . scaffold40952 GLEAN mRNA 83582 90461 0.641337 - . ID=CGI_10004595; scaffold40952 TRF Tandem_Repeat 85159 86036 1339 + . . scaffold40952 GLEAN promoter 90462 91461 0.641337 - . ID=CGI_10004595; scaffold40952 WUBlastX DNA_Merlin 101575 102447 405 - . . scaffold40960 GLEAN mRNA 4964 19748 0.995292 - . ID=CGI_10004560; scaffold40960 TRF Tandem_Repeat 5569 6026 790 + . . scaffold40960 WUBlastX LINE_RTE-X 6950 7408 120 - . . scaffold40960 WUBlastX LINE_RTE-X 6950 7279 162 - . . scaffold40960 TRF Tandem_Repeat 13969 14363 677 + . . scaffold40960 GLEAN promoter 19749 20748 0.995292 - . ID=CGI_10004560; scaffold40960 WUBlastX LINE_RTE-X 21710 22207 99 - . . scaffold40960 GLEAN promoter 21951 22950 1 + . ID=CGI_10004561; scaffold40960 WUBlastX LINE_RTE-X 22177 22527 162 - . . scaffold40960 WUBlastX LINE_RTE-X 22231 22524 168 - . . scaffold40960 WUBlastX LINE_RTE-X 22471 22539 60 - . . scaffold40960 GLEAN mRNA 22951 26389 1 + . ID=CGI_10004561; scaffold40960 GLEAN mRNA 27319 29274 0.999958 - . ID=CGI_10004562; scaffold40960 GLEAN promoter 29275 30274 0.999958 - . ID=CGI_10004562; scaffold40960 TRF Tandem_Repeat 30693 30735 86 + . . scaffold40960 GLEAN mRNA 36638 48841 0.993907 - . ID=CGI_10004563; scaffold40960 GLEAN promoter 48614 49613 1 + . ID=CGI_10004564; scaffold40960 GLEAN promoter 48842 49841 0.993907 - . ID=CGI_10004563; scaffold40960 GLEAN mRNA 49614 51673 1 + . ID=CGI_10004564; scaffold40960 GLEAN promoter 52759 53758 0.999999 + . ID=CGI_10004565; scaffold40960 GLEAN mRNA 53759 73021 0.999999 + . ID=CGI_10004565; scaffold40960 TRF Tandem_Repeat 57432 57720 506 + . . scaffold40960 TRF Tandem_Repeat 57432 58395 1289 + . . scaffold40960 TRF Tandem_Repeat 57749 58395 950 + . . scaffold40960 TRF Tandem_Repeat 63117 63260 184 + . . scaffold40960 GLEAN mRNA 72316 84082 0.599793 - . ID=CGI_10004566; scaffold40960 GLEAN promoter 83163 84162 0.780129 + . ID=CGI_10004567; scaffold40960 GLEAN promoter 84083 85082 0.599793 - . ID=CGI_10004566; scaffold40960 GLEAN mRNA 84163 97308 0.780129 + . ID=CGI_10004567; scaffold40960 TRF Tandem_Repeat 85430 87712 3542 + . . scaffold40960 GLEAN mRNA 90755 91078 0.485733 - . ID=CGI_10004568; scaffold40960 GLEAN promoter 91079 92078 0.485733 - . ID=CGI_10004568; scaffold40960 TRF Tandem_Repeat 91115 91280 251 + . . scaffold40960 GLEAN mRNA 101793 103814 0.746097 - . ID=CGI_10004569; scaffold40960 GLEAN promoter 103815 104109 0.746097 - . ID=CGI_10004569; scaffold40974 TRF Tandem_Repeat 36364 36403 62 + . . scaffold40974 WUBlastX DNA_Kolobok 68978 69232 54 + . . scaffold40974 WUBlastX DNA_Kolobok 69797 69976 56 - . . scaffold40974 TRF Tandem_Repeat 70499 70539 82 + . . scaffold40974 TRF Tandem_Repeat 72645 72691 67 + . . scaffold40974 GLEAN mRNA 75327 75575 0.932018 - . ID=CGI_10004622; scaffold40974 GLEAN promoter 75576 76575 0.932018 - . ID=CGI_10004622; scaffold40974 TRF Tandem_Repeat 83567 83655 135 + . . scaffold40974 TRF Tandem_Repeat 83567 83649 112 + . . scaffold40974 TRF Tandem_Repeat 87811 87858 71 + . . scaffold40974 TRF Tandem_Repeat 94514 94565 104 + . . scaffold40980 GLEAN promoter 1 105 0.99481 + . ID=CGI_10004601; scaffold40980 GLEAN mRNA 106 19695 0.99481 + . ID=CGI_10004601; scaffold40980 TRF Tandem_Repeat 390 422 66 + . . scaffold40980 TRF Tandem_Repeat 3501 3533 57 + . . scaffold40980 TRF Tandem_Repeat 7340 7374 70 + . . scaffold40980 GLEAN mRNA 14187 14582 0.618186 - . ID=CGI_10004602; scaffold40980 GLEAN promoter 14583 15582 0.618186 - . ID=CGI_10004602; scaffold40980 GLEAN mRNA 15234 16475 0.69447 - . ID=CGI_10004603; scaffold40980 GLEAN promoter 16476 17475 0.69447 - . ID=CGI_10004603; scaffold40980 GLEAN mRNA 20359 31971 1 - . ID=CGI_10004604; scaffold40980 TRF Tandem_Repeat 31715 31759 90 + . . scaffold40980 GLEAN promoter 31972 32971 1 - . ID=CGI_10004604; scaffold40980 GLEAN promoter 50724 51723 0.412571 + . ID=CGI_10004605; scaffold40980 GLEAN mRNA 51724 55266 0.412571 + . ID=CGI_10004605; scaffold40980 TRF Tandem_Repeat 63559 63612 90 + . . scaffold40980 TRF Tandem_Repeat 64275 64481 137 + . . scaffold40980 TRF Tandem_Repeat 67514 67568 103 + . . scaffold40980 TRF Tandem_Repeat 69382 69429 96 + . . scaffold40980 GLEAN mRNA 79073 90416 0.999635 - . ID=CGI_10004606; scaffold40980 WUBlastX LINE_L2 89522 89803 95 - . . scaffold40980 GLEAN promoter 90417 91416 0.999635 - . ID=CGI_10004606; scaffold40980 TRF Tandem_Repeat 92438 92492 110 + . . scaffold40980 GLEAN promoter 96057 97056 0.733495 + . ID=CGI_10004607; scaffold40980 GLEAN mRNA 97057 97296 0.733495 + . ID=CGI_10004607; scaffold40982 GLEAN mRNA 2138 5149 0.931674 - . ID=CGI_10004614; scaffold40982 GLEAN promoter 5150 6149 0.931674 - . ID=CGI_10004614; scaffold40982 GLEAN promoter 9222 10221 0.924676 + . ID=CGI_10004615; scaffold40982 GLEAN mRNA 10222 10569 0.924676 + . ID=CGI_10004615; scaffold40982 TRF Tandem_Repeat 21300 21351 86 + . . scaffold40982 TRF Tandem_Repeat 21300 21357 73 + . . scaffold40982 WUBlastX DNA_IS4EU 22383 22982 46 + . . scaffold40982 GLEAN mRNA 23999 24828 0.544851 - . ID=CGI_10004616; scaffold40982 GLEAN promoter 24829 25828 0.544851 - . ID=CGI_10004616; scaffold40982 TRF Tandem_Repeat 25681 25740 120 + . . scaffold40982 GLEAN promoter 25768 26767 0.999855 + . ID=CGI_10004617; scaffold40982 GLEAN mRNA 26768 30128 0.999855 + . ID=CGI_10004617; scaffold40982 TRF Tandem_Repeat 28616 28724 51 + . . scaffold40982 TRF Tandem_Repeat 28634 28744 64 + . . scaffold40982 GLEAN promoter 30149 31148 0.999999 + . ID=CGI_10004618; scaffold40982 GLEAN mRNA 31149 36737 0.999999 + . ID=CGI_10004618; scaffold40982 GLEAN mRNA 34252 35680 1 - . ID=CGI_10004619; scaffold40982 GLEAN promoter 35681 36680 1 - . ID=CGI_10004619; scaffold40982 TRF Tandem_Repeat 38154 38247 122 + . . scaffold40982 TRF Tandem_Repeat 39561 39601 82 + . . scaffold40982 TRF Tandem_Repeat 39627 40069 314 + . . scaffold40982 WUBlastX LINE_L1 51503 51757 30 - . . scaffold40982 WUBlastX LINE_L1 51518 51676 60 - . . scaffold40982 WUBlastX LINE_L1 51870 51923 34 - . . scaffold40982 TRF Tandem_Repeat 63442 63487 92 + . . scaffold40982 TRF Tandem_Repeat 66751 66790 80 + . . scaffold40982 GLEAN mRNA 71679 75272 0.937847 - . ID=CGI_10004620; scaffold40982 GLEAN promoter 75273 76272 0.937847 - . ID=CGI_10004620; scaffold40982 TRF Tandem_Repeat 78544 79231 662 + . . scaffold40982 WUBlastX LTR_Gypsy 80491 80622 21 + . . scaffold40982 WUBlastX LTR_DIRS 80604 80963 86 + . . scaffold40982 WUBlastX LTR_DIRS 81017 81406 39 + . . scaffold40982 WUBlastX LTR_DIRS 81044 81352 152 + . . scaffold40982 WUBlastX LTR_DIRS 81387 81971 281 + . . scaffold40982 WUBlastX LTR_DIRS 82003 82263 34 + . . scaffold40982 WUBlastX LTR_DIRS 83393 84328 40 + . . scaffold40982 WUBlastX LTR_DIRS 83738 84370 188 + . . scaffold40982 WUBlastX LTR_DIRS 84950 85021 28 + . . scaffold40982 WUBlastX LTR_DIRS 85290 85388 65 + . . scaffold40982 WUBlastX LTR_DIRS 85385 85672 173 + . . scaffold40982 WUBlastX LTR_DIRS 85618 85791 110 + . . scaffold40982 WUBlastX LTR_DIRS 85800 86195 160 + . . scaffold40982 WUBlastX LTR_DIRS 86174 86383 109 + . . scaffold40982 WUBlastX LTR_DIRS 86392 87537 517 + . . scaffold40982 WUBlastX LTR_DIRS 87512 88084 126 + . . scaffold40982 WUBlastX LTR_DIRS 87689 88084 144 + . . scaffold40982 WUBlastX LTR_DIRS 89310 89777 235 + . . scaffold40982 TRF Tandem_Repeat 91155 91191 74 + . . scaffold40982 TRF Tandem_Repeat 95559 95590 64 + . . scaffold40982 GLEAN promoter 96219 97218 0.748175 + . ID=CGI_10004621; scaffold40982 GLEAN mRNA 97219 100991 0.748175 + . ID=CGI_10004621; scaffold40982 TRF Tandem_Repeat 101039 101104 132 + . . scaffold40988 TRF Tandem_Repeat 178 239 124 + . . scaffold40988 WUBlastX LINE_L2 4724 4963 46 - . . scaffold40988 WUBlastX LINE_L2 4984 5088 20 - . . scaffold40988 WUBlastX LINE_L2 5119 5181 22 - . . scaffold40988 WUBlastX LTR_Ngaro 9496 9999 76 - . . scaffold40988 WUBlastX LTR_Ngaro 10016 10342 113 - . . scaffold40988 WUBlastX LTR_Ngaro 10372 11739 528 - . . scaffold40988 WUBlastX LTR_Ngaro 11721 12005 21 - . . scaffold40988 WUBlastX LTR_Ngaro 11727 11930 90 - . . scaffold40988 WUBlastX LTR_Ngaro 13344 13730 125 - . . scaffold40988 WUBlastX LTR_Ngaro 13777 13863 56 - . . scaffold40988 WUBlastX LINE_L1 18303 19349 449 + . . scaffold40988 WUBlastX LINE_L1-Tx1 19372 23154 1578 + . . scaffold40988 WUBlastX DNA_IS4EU 25889 26134 53 + . . scaffold40988 WUBlastX DNA_TcMar-Fot1 28566 28877 73 - . . scaffold40988 WUBlastX DNA_TcMar-Fot1 28569 28832 79 - . . scaffold40988 WUBlastX DNA_IS4EU 31052 31144 49 - . . scaffold40988 WUBlastX DNA_IS4EU 31078 31275 66 - . . scaffold40988 WUBlastX LTR_Pao 31939 32091 85 - . . scaffold40988 WUBlastX LTR_Pao 32094 32480 234 - . . scaffold40988 WUBlastX LTR_Pao 32423 32611 44 - . . scaffold40988 WUBlastX LTR_Pao 32607 32870 121 - . . scaffold40988 WUBlastX LTR_Pao 32811 33230 85 - . . scaffold40988 WUBlastX LTR_Pao 33019 34845 556 - . . scaffold40988 WUBlastX LTR_Pao 34779 35453 58 - . . scaffold40988 WUBlastX LTR_Pao 34782 35315 297 - . . scaffold40988 TRF Tandem_Repeat 39566 39591 52 + . . scaffold40988 GLEAN mRNA 81554 89400 0.998363 - . ID=CGI_10004648; scaffold40988 GLEAN promoter 89401 90400 0.998363 - . ID=CGI_10004648; scaffold40988 WUBlastX LTR_Pao 92237 93223 770 - . . scaffold40994 TRF Tandem_Repeat 2804 2837 68 + . . scaffold40994 GLEAN promoter 13027 14026 0.999994 + . ID=CGI_10004638; scaffold40994 GLEAN mRNA 14027 14288 0.999994 + . ID=CGI_10004638; scaffold40994 TRF Tandem_Repeat 17481 17614 87 + . . scaffold40994 TRF Tandem_Repeat 34265 34301 74 + . . scaffold40994 TRF Tandem_Repeat 37617 37727 59 + . . scaffold40994 TRF Tandem_Repeat 37618 37682 60 + . . scaffold40994 TRF Tandem_Repeat 39325 39371 94 + . . scaffold40994 TRF Tandem_Repeat 40989 41034 92 + . . scaffold40994 TRF Tandem_Repeat 47652 47705 108 + . . scaffold40994 TRF Tandem_Repeat 50173 50214 84 + . . scaffold40994 WUBlastX LTR_Copia 67636 67824 20 - . . scaffold40994 WUBlastX LTR_Gypsy 67732 71721 3039 - . . scaffold40994 TRF Tandem_Repeat 73997 74047 61 + . . scaffold40994 TRF Tandem_Repeat 77152 77183 55 + . . scaffold40994 TRF Tandem_Repeat 84884 84953 79 + . . scaffold40994 TRF Tandem_Repeat 85037 85109 137 + . . scaffold40994 TRF Tandem_Repeat 87648 87887 180 + . . scaffold40994 TRF Tandem_Repeat 87675 87862 182 + . . scaffold40994 TRF Tandem_Repeat 87688 87899 158 + . . scaffold40994 TRF Tandem_Repeat 88088 88278 128 + . . scaffold40994 TRF Tandem_Repeat 89227 89787 401 + . . scaffold40994 TRF Tandem_Repeat 89571 89647 50 + . . scaffold40994 TRF Tandem_Repeat 94454 94566 174 + . . scaffold40994 WUBlastX LINE_L1 98780 99349 29 + . . scaffold40994 WUBlastX LINE_L1-Tx1 98867 99364 51 + . . scaffold40994 WUBlastX LINE_L1-Tx1 99379 99591 24 + . . scaffold40994 WUBlastX LINE_L1 101177 101710 21 + . . scaffold40994 WUBlastX LINE_L1-Tx1 101384 101746 42 + . . scaffold40994 TRF Tandem_Repeat 104724 104761 51 + . . scaffold40994 TRF Tandem_Repeat 104976 105013 58 + . . scaffold40994 TRF Tandem_Repeat 105161 105199 51 + . . scaffold40994 TRF Tandem_Repeat 105212 105299 115 + . . scaffold410 TRF Tandem_Repeat 13840 13929 144 + . . scaffold410 TRF Tandem_Repeat 15472 15571 137 + . . scaffold410 GLEAN mRNA 17143 18601 1 - . ID=CGI_10020615; scaffold410 GLEAN promoter 18602 19601 1 - . ID=CGI_10020615; scaffold410 WUBlastX DNA_P 27945 28232 117 - . . scaffold410 WUBlastX DNA_P 27993 28226 135 - . . scaffold410 WUBlastX DNA_P 28709 28897 32 - . . scaffold410 TRF Tandem_Repeat 34711 34742 64 + . . scaffold410 TRF Tandem_Repeat 46546 46578 57 + . . scaffold410 TRF Tandem_Repeat 49552 49594 54 + . . scaffold410 WUBlastX DNA_Crypton 51909 52079 59 + . . scaffold410 WUBlastX DNA_Crypton 52076 52435 67 + . . scaffold410 WUBlastX LINE_RTE-X 55825 56160 58 + . . scaffold410 WUBlastX LINE_RTE-X 56160 56513 63 + . . scaffold410 WUBlastX LINE_RTE-X 56193 56579 47 + . . scaffold410 WUBlastX LINE_RTE-X 56262 56690 44 + . . scaffold410 GLEAN promoter 69000 69999 0.5 + . ID=CGI_10020616; scaffold410 GLEAN mRNA 70000 70855 0.5 + . ID=CGI_10020616; scaffold410 TRF Tandem_Repeat 72391 72432 59 + . . scaffold410 GLEAN promoter 79789 80788 0.777738 + . ID=CGI_10020617; scaffold410 GLEAN mRNA 80789 82007 0.777738 + . ID=CGI_10020617; scaffold410 TRF Tandem_Repeat 81608 81648 82 + . . scaffold410 TRF Tandem_Repeat 90697 90745 98 + . . scaffold410 TRF Tandem_Repeat 117137 117169 66 + . . scaffold410 WUBlastX LTR_Gypsy 119401 120396 94 - . . scaffold410 WUBlastX LTR_Gypsy 119839 120339 130 - . . scaffold410 WUBlastX LTR_Gypsy-Cigr 119920 120432 174 - . . scaffold410 WUBlastX LTR_ERV1 119923 120672 154 - . . scaffold410 WUBlastX LTR_Gypsy 120001 120804 86 - . . scaffold410 WUBlastX LTR_Gypsy 121222 121323 20 - . . scaffold410 TRF Tandem_Repeat 130957 130990 50 + . . scaffold410 GLEAN promoter 131350 132349 1 + . ID=CGI_10020618; scaffold410 GLEAN mRNA 132350 141889 1 + . ID=CGI_10020618; scaffold410 TRF Tandem_Repeat 140025 140934 1397 + . . scaffold410 GLEAN promoter 141184 142183 0.998504 + . ID=CGI_10020619; scaffold410 GLEAN mRNA 142184 142831 0.998504 + . ID=CGI_10020619; scaffold410 GLEAN mRNA 145780 153017 0.999219 - . ID=CGI_10020620; scaffold410 GLEAN promoter 152975 153974 0.881257 + . ID=CGI_10020621; scaffold410 GLEAN promoter 153018 154017 0.999219 - . ID=CGI_10020620; scaffold410 GLEAN mRNA 153975 157556 0.881257 + . ID=CGI_10020621; scaffold410 GLEAN mRNA 157995 165648 0.999812 - . ID=CGI_10020622; scaffold410 TRF Tandem_Repeat 158353 158701 195 + . . scaffold410 TRF Tandem_Repeat 158451 158701 152 + . . scaffold410 GLEAN promoter 165297 166296 0.881257 + . ID=CGI_10020623; scaffold410 GLEAN promoter 165649 166648 0.999812 - . ID=CGI_10020622; scaffold410 GLEAN mRNA 166297 170658 0.881257 + . ID=CGI_10020623; scaffold410 GLEAN promoter 170051 171050 0.986936 + . ID=CGI_10020624; scaffold410 GLEAN mRNA 171051 174502 0.986936 + . ID=CGI_10020624; scaffold410 TRF Tandem_Repeat 173766 173803 76 + . . scaffold410 GLEAN promoter 180290 181289 1 + . ID=CGI_10020625; scaffold410 GLEAN mRNA 181290 187561 1 + . ID=CGI_10020625; scaffold410 TRF Tandem_Repeat 193934 193980 53 + . . scaffold410 TRF Tandem_Repeat 193938 193979 54 + . . scaffold410 GLEAN promoter 196429 197428 0.875953 + . ID=CGI_10020626; scaffold410 GLEAN mRNA 197429 217946 0.875953 + . ID=CGI_10020626; scaffold410 GLEAN promoter 217089 218088 0.619231 + . ID=CGI_10020627; scaffold410 GLEAN mRNA 218089 226761 0.619231 + . ID=CGI_10020627; scaffold410 TRF Tandem_Repeat 226203 226250 82 + . . scaffold410 GLEAN mRNA 233072 235721 1 - . ID=CGI_10020628; scaffold410 GLEAN promoter 235722 236721 1 - . ID=CGI_10020628; scaffold410 GLEAN promoter 238199 239198 1 + . ID=CGI_10020629; scaffold410 GLEAN mRNA 239199 241244 1 + . ID=CGI_10020629; scaffold410 GLEAN promoter 242425 243424 1 + . ID=CGI_10020630; scaffold410 GLEAN mRNA 243425 248609 1 + . ID=CGI_10020630; scaffold410 GLEAN promoter 251198 252197 1 + . ID=CGI_10020631; scaffold410 GLEAN mRNA 252198 259220 1 + . ID=CGI_10020631; scaffold410 GLEAN promoter 260101 261100 0.399222 + . ID=CGI_10020632; scaffold410 GLEAN mRNA 261101 270903 0.399222 + . ID=CGI_10020632; scaffold410 WUBlastX LINE_RTE-BovB 262869 263051 43 + . . scaffold410 WUBlastX LINE_CR1 263416 265248 1324 + . . scaffold410 WUBlastX LINE_L2 265574 265651 22 + . . scaffold410 WUBlastX LINE_CR1 265586 265630 22 + . . scaffold410 WUBlastX LINE_L1-Tx1 265598 265690 28 + . . scaffold410 TRF Tandem_Repeat 281515 281559 90 + . . scaffold410 GLEAN mRNA 286438 290992 0.989219 - . ID=CGI_10020633; scaffold410 TRF Tandem_Repeat 289698 289851 245 + . . scaffold410 GLEAN promoter 290993 291992 0.989219 - . ID=CGI_10020633; scaffold410 GLEAN mRNA 295231 297589 1 - . ID=CGI_10020634; scaffold410 GLEAN promoter 297590 298589 1 - . ID=CGI_10020634; scaffold410 GLEAN promoter 297599 298598 0.996652 + . ID=CGI_10020635; scaffold410 GLEAN mRNA 298599 310174 0.996652 + . ID=CGI_10020635; scaffold410 TRF Tandem_Repeat 298754 299068 400 + . . scaffold410 WUBlastX LTR_DIRS 299546 300592 554 - . . scaffold410 WUBlastX LTR_DIRS 300343 302370 1294 - . . scaffold410 WUBlastX LTR_DIRS 302352 302960 199 - . . scaffold410 WUBlastX LTR_DIRS 302394 303392 180 - . . scaffold410 WUBlastX LINE_RTE-X 304348 304536 65 - . . scaffold410 WUBlastX LTR_DIRS 305542 305790 26 - . . scaffold410 WUBlastX LTR_DIRS 305593 305913 29 - . . scaffold410 TRF Tandem_Repeat 306341 306589 417 + . . scaffold410 TRF Tandem_Repeat 309482 309714 194 + . . scaffold410 GLEAN promoter 310320 311319 0.995383 + . ID=CGI_10020636; scaffold410 GLEAN mRNA 311320 338699 0.995383 + . ID=CGI_10020636; scaffold410 TRF Tandem_Repeat 314082 314376 278 + . . scaffold410 TRF Tandem_Repeat 315557 315730 253 + . . scaffold410 TRF Tandem_Repeat 316835 317386 971 + . . scaffold410 TRF Tandem_Repeat 318478 318616 111 + . . scaffold410 TRF Tandem_Repeat 320344 320405 90 + . . scaffold410 TRF Tandem_Repeat 323374 323469 147 + . . scaffold410 TRF Tandem_Repeat 323388 323439 50 + . . scaffold410 TRF Tandem_Repeat 332900 332958 60 + . . scaffold410 TRF Tandem_Repeat 333511 333585 61 + . . scaffold410 TRF Tandem_Repeat 333530 333585 55 + . . scaffold410 TRF Tandem_Repeat 333531 333619 67 + . . scaffold410 TRF Tandem_Repeat 333920 334039 113 + . . scaffold410 TRF Tandem_Repeat 333932 334045 111 + . . scaffold410 TRF Tandem_Repeat 334191 334252 61 + . . scaffold410 GLEAN promoter 359168 360167 0.999305 + . ID=CGI_10020637; scaffold410 GLEAN mRNA 360168 369242 0.999305 + . ID=CGI_10020637; scaffold410 TRF Tandem_Repeat 362700 363508 1171 + . . scaffold410 TRF Tandem_Repeat 364391 364470 56 + . . scaffold410 TRF Tandem_Repeat 367731 368071 547 + . . scaffold410 TRF Tandem_Repeat 368126 368505 258 + . . scaffold410 GLEAN mRNA 372718 388763 0.99795 - . ID=CGI_10020638; scaffold410 TRF Tandem_Repeat 385763 385956 295 + . . scaffold410 TRF Tandem_Repeat 385914 386173 412 + . . scaffold410 TRF Tandem_Repeat 386138 386297 257 + . . scaffold410 GLEAN promoter 388764 389763 0.99795 - . ID=CGI_10020638; scaffold410 TRF Tandem_Repeat 391724 391776 99 + . . scaffold410 GLEAN promoter 394291 395290 1 + . ID=CGI_10020639; scaffold410 GLEAN mRNA 395291 402230 1 + . ID=CGI_10020639; scaffold410 TRF Tandem_Repeat 400699 400936 377 + . . scaffold410 GLEAN promoter 402537 403536 0.702075 + . ID=CGI_10020640; scaffold410 GLEAN mRNA 403537 410629 0.702075 + . ID=CGI_10020640; scaffold410 TRF Tandem_Repeat 405021 405676 756 + . . scaffold410 GLEAN mRNA 411448 424029 0.219556 - . ID=CGI_10020641; scaffold410 TRF Tandem_Repeat 415694 415733 71 + . . scaffold410 TRF Tandem_Repeat 418999 419044 83 + . . scaffold410 TRF Tandem_Repeat 419594 419721 229 + . . scaffold410 GLEAN promoter 422856 423855 0.758466 + . ID=CGI_10020642; scaffold410 GLEAN mRNA 423856 425480 0.758466 + . ID=CGI_10020642; scaffold410 GLEAN promoter 424030 425029 0.219556 - . ID=CGI_10020641; scaffold410 GLEAN promoter 424559 425558 0.751908 + . ID=CGI_10020643; scaffold410 GLEAN mRNA 425559 461413 0.751908 + . ID=CGI_10020643; scaffold410 TRF Tandem_Repeat 427352 427542 330 + . . scaffold410 TRF Tandem_Repeat 428768 429102 543 + . . scaffold410 TRF Tandem_Repeat 428768 429102 547 + . . scaffold410 TRF Tandem_Repeat 434563 435498 1227 + . . scaffold410 TRF Tandem_Repeat 434563 435503 1141 + . . scaffold410 TRF Tandem_Repeat 456952 456987 72 + . . scaffold410 GLEAN promoter 460723 461722 0.998339 + . ID=CGI_10020644; scaffold410 GLEAN mRNA 461723 475973 0.998339 + . ID=CGI_10020644; scaffold410 TRF Tandem_Repeat 478499 478565 55 + . . scaffold410 TRF Tandem_Repeat 478499 478568 63 + . . scaffold410 TRF Tandem_Repeat 478499 478567 54 + . . scaffold410 WUBlastX LINE_L2 483846 483944 22 - . . scaffold410 WUBlastX LINE_L1 484110 484163 23 - . . scaffold410 WUBlastX LINE_CR1-L2 484322 485704 99 - . . scaffold410 WUBlastX LINE_CR1 484604 485704 469 - . . scaffold410 WUBlastX LINE_CR1 485189 486325 272 - . . scaffold410 WUBlastX LINE_CR1 486227 486346 34 - . . scaffold410 WUBlastX LINE_CR1-L2 486988 488424 653 - . . scaffold410 WUBlastX LINE_Rex-Babar 487684 488733 169 - . . scaffold410 WUBlastX LINE_CR1 488713 489117 104 - . . scaffold410 WUBlastX LINE_CR1 488728 489024 161 - . . scaffold410 TRF Tandem_Repeat 495343 495435 69 + . . scaffold410 TRF Tandem_Repeat 513954 513988 61 + . . scaffold410 WUBlastX LINE_RTE-BovB 526647 526703 24 + . . scaffold410 WUBlastX LINE_L1 527302 528282 98 + . . scaffold410 WUBlastX LINE_L1-Tx1 527461 528672 360 + . . scaffold410 WUBlastX LINE_L1-Tx1 527464 529215 277 + . . scaffold410 WUBlastX LINE_L1 529383 529454 21 + . . scaffold410 GLEAN promoter 533623 534622 1 + . ID=CGI_10020645; scaffold410 GLEAN mRNA 534623 536465 1 + . ID=CGI_10020645; scaffold410 TRF Tandem_Repeat 536494 536535 84 + . . scaffold410 GLEAN mRNA 541017 546860 0.999975 - . ID=CGI_10020646; scaffold410 GLEAN promoter 546861 547860 0.999975 - . ID=CGI_10020646; scaffold410 GLEAN promoter 547603 548602 0.993449 + . ID=CGI_10020647; scaffold410 GLEAN mRNA 548603 563914 0.993449 + . ID=CGI_10020647; scaffold410 TRF Tandem_Repeat 550622 550671 57 + . . scaffold410 TRF Tandem_Repeat 550622 550671 66 + . . scaffold410 TRF Tandem_Repeat 550630 550672 70 + . . scaffold410 TRF Tandem_Repeat 551124 551161 69 + . . scaffold410 TRF Tandem_Repeat 559513 559563 93 + . . scaffold410 TRF Tandem_Repeat 560858 561131 263 + . . scaffold410 TRF Tandem_Repeat 560858 561128 298 + . . scaffold410 TRF Tandem_Repeat 561989 562158 218 + . . scaffold410 GLEAN promoter 564798 565797 1 + . ID=CGI_10020648; scaffold410 GLEAN mRNA 565798 589082 1 + . ID=CGI_10020648; scaffold410 GLEAN promoter 593969 594968 1 + . ID=CGI_10020649; scaffold410 GLEAN mRNA 594969 595331 1 + . ID=CGI_10020649; scaffold410 GLEAN promoter 597243 598242 0.558382 + . ID=CGI_10020650; scaffold410 GLEAN mRNA 598243 605499 0.558382 + . ID=CGI_10020650; scaffold410 GLEAN promoter 634218 635217 0.983594 + . ID=CGI_10020651; scaffold410 GLEAN mRNA 635218 641119 0.983594 + . ID=CGI_10020651; scaffold410 TRF Tandem_Repeat 638986 639012 54 + . . scaffold410 TRF Tandem_Repeat 645203 645280 84 + . . scaffold410 TRF Tandem_Repeat 645214 645297 96 + . . scaffold410 TRF Tandem_Repeat 645313 645472 103 + . . scaffold410 WUBlastX DNA_Kolobok 649030 649275 123 - . . scaffold410 WUBlastX DNA_Kolobok 649487 649576 28 - . . scaffold41008 GLEAN mRNA 1347 1499 0.776794 - . ID=CGI_10004640; scaffold41008 GLEAN promoter 1500 2499 0.776794 - . ID=CGI_10004640; scaffold41008 TRF Tandem_Repeat 5107 5172 132 + . . scaffold41008 TRF Tandem_Repeat 25002 25043 84 + . . scaffold41008 WUBlastX LINE_Penelope 33464 34360 238 - . . scaffold41008 WUBlastX LINE_Penelope 34365 34418 22 - . . scaffold41008 TRF Tandem_Repeat 38141 38192 88 + . . scaffold41008 TRF Tandem_Repeat 38751 38797 58 + . . scaffold41008 TRF Tandem_Repeat 41417 41456 55 + . . scaffold41008 WUBlastX LTR_Ngaro 50029 50982 55 + . . scaffold41008 WUBlastX LTR_Ngaro 50128 50826 162 + . . scaffold41008 WUBlastX LTR_Ngaro 50269 50880 182 + . . scaffold41008 TRF Tandem_Repeat 57454 57518 121 + . . scaffold41008 WUBlastX LTR_Ngaro 57743 57913 77 + . . scaffold41008 WUBlastX LTR_Ngaro 57921 58289 193 + . . scaffold41008 WUBlastX LTR_Ngaro 58268 58726 150 + . . scaffold41008 GLEAN promoter 58528 59527 0.866433 + . ID=CGI_10004641; scaffold41008 WUBlastX LTR_Ngaro 58701 59168 181 + . . scaffold41008 GLEAN mRNA 59528 59779 0.866433 + . ID=CGI_10004641; scaffold41008 GLEAN mRNA 59833 63209 1 - . ID=CGI_10004642; scaffold41008 GLEAN promoter 63210 64209 1 - . ID=CGI_10004642; scaffold41008 WUBlastX DNA_Crypton 73813 74196 78 + . . scaffold41008 WUBlastX DNA_Crypton 73840 74139 103 + . . scaffold41008 TRF Tandem_Repeat 76191 76633 456 + . . scaffold41008 TRF Tandem_Repeat 93028 93098 142 + . . scaffold41008 TRF Tandem_Repeat 96458 96511 81 + . . scaffold41008 TRF Tandem_Repeat 102693 102786 134 + . . scaffold41008 TRF Tandem_Repeat 102949 103085 98 + . . scaffold41008 TRF Tandem_Repeat 103164 103276 192 + . . scaffold41014 TRF Tandem_Repeat 13187 13212 52 + . . scaffold41014 WUBlastX LINE_L1 28971 30815 125 - . . scaffold41014 WUBlastX LINE_L1-Tx1 30021 30815 247 - . . scaffold41014 WUBlastX LINE_L1-Tx1 30769 31308 418 - . . scaffold41014 WUBlastX LINE_L1-Tx1 30829 31620 216 - . . scaffold41014 TRF Tandem_Repeat 34354 34397 56 + . . scaffold41014 TRF Tandem_Repeat 36449 36474 52 + . . scaffold41014 TRF Tandem_Repeat 51728 51766 78 + . . scaffold41014 TRF Tandem_Repeat 60542 60651 86 + . . scaffold41014 GLEAN mRNA 64146 100898 0.861197 - . ID=CGI_10004639; scaffold41014 WUBlastX DNA_Crypton 66386 66664 41 - . . scaffold41014 WUBlastX DNA_Crypton 66742 66951 60 - . . scaffold41014 TRF Tandem_Repeat 68526 68558 66 + . . scaffold41014 TRF Tandem_Repeat 68591 68694 88 + . . scaffold41014 TRF Tandem_Repeat 68610 68710 130 + . . scaffold41014 TRF Tandem_Repeat 76691 76769 79 + . . scaffold41014 TRF Tandem_Repeat 76696 76769 68 + . . scaffold41014 TRF Tandem_Repeat 76700 76769 72 + . . scaffold41014 TRF Tandem_Repeat 82120 82226 117 + . . scaffold41014 TRF Tandem_Repeat 86876 89585 3286 + . . scaffold41014 GLEAN promoter 100899 101898 0.861197 - . ID=CGI_10004639; scaffold41022 TRF Tandem_Repeat 1500 1551 104 + . . scaffold41022 TRF Tandem_Repeat 4057 4112 112 + . . scaffold41022 GLEAN mRNA 13980 41822 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 17235 17282 55 + . . scaffold41022 TRF Tandem_Repeat 27015 27076 124 + . . scaffold41022 TRF Tandem_Repeat 27142 27180 53 + . . scaffold41022 TRF Tandem_Repeat 32946 33227 546 + . . scaffold41022 TRF Tandem_Repeat 37811 37838 56 + . . scaffold41022 TRF Tandem_Repeat 38514 38557 88 + . . scaffold41022 TRF Tandem_Repeat 38944 39129 322 + . . scaffold41022 GLEAN promoter 41823 42822 0.678141 - . ID=CGI_10004635; scaffold41022 TRF Tandem_Repeat 47932 47968 74 + . . scaffold41022 GLEAN promoter 53156 54155 0.993705 + . ID=CGI_10004636; scaffold41022 GLEAN mRNA 54156 57143 0.993705 + . ID=CGI_10004636; scaffold41022 TRF Tandem_Repeat 55310 55367 98 + . . scaffold41022 TRF Tandem_Repeat 55481 55506 52 + . . scaffold41022 TRF Tandem_Repeat 58433 58463 62 + . . scaffold41022 TRF Tandem_Repeat 60941 60974 68 + . . scaffold41022 TRF Tandem_Repeat 61105 61139 70 + . . scaffold41022 TRF Tandem_Repeat 61875 61902 56 + . . scaffold41022 GLEAN promoter 86016 87015 0.650358 + . ID=CGI_10004637; scaffold41022 GLEAN mRNA 87016 104666 0.650358 + . ID=CGI_10004637; scaffold41022 TRF Tandem_Repeat 93462 93940 411 + . . scaffold41022 WUBlastX LINE_RTE-X 97718 98002 35 - . . scaffold41022 WUBlastX LINE_RTE-X 98025 98156 46 - . . scaffold41022 TRF Tandem_Repeat 101395 101586 215 + . . scaffold41022 TRF Tandem_Repeat 101586 101690 104 + . . scaffold41022 TRF Tandem_Repeat 101603 101759 161 + . . scaffold41022 TRF Tandem_Repeat 103213 103254 77 + . . scaffold41034 TRF Tandem_Repeat 3431 3487 114 + . . scaffold41034 GLEAN mRNA 3581 36441 0.199865 - . ID=CGI_10004649; scaffold41034 TRF Tandem_Repeat 14010 14102 170 + . . scaffold41034 TRF Tandem_Repeat 15956 16230 324 + . . scaffold41034 TRF Tandem_Repeat 17298 17524 237 + . . scaffold41034 TRF Tandem_Repeat 17298 17524 271 + . . scaffold41034 GLEAN promoter 36442 37441 0.199865 - . ID=CGI_10004649; scaffold41034 GLEAN mRNA 38348 53447 0.5 - . ID=CGI_10004650; scaffold41034 GLEAN promoter 39186 40185 0.65884 + . ID=CGI_10004651; scaffold41034 TRF Tandem_Repeat 39916 39973 107 + . . scaffold41034 GLEAN mRNA 40186 62880 0.65884 + . ID=CGI_10004651; scaffold41034 TRF Tandem_Repeat 42981 43995 963 + . . scaffold41034 GLEAN promoter 53448 54447 0.5 - . ID=CGI_10004650; scaffold41034 WUBlastX DNA_Academ 56996 57256 72 + . . scaffold41034 WUBlastX LTR_DIRS 57934 58020 54 + . . scaffold41034 WUBlastX LTR_DIRS 58020 58382 187 + . . scaffold41034 WUBlastX LTR_DIRS 58402 58653 79 + . . scaffold41034 WUBlastX LTR_DIRS 58402 58713 67 + . . scaffold41034 WUBlastX LTR_DIRS 58658 58822 24 + . . scaffold41034 WUBlastX LTR_DIRS 58754 58849 53 + . . scaffold41034 WUBlastX LTR_DIRS 59281 59448 100 + . . scaffold41034 GLEAN promoter 64834 65833 1 + . ID=CGI_10004652; scaffold41034 GLEAN mRNA 65834 103548 1 + . ID=CGI_10004652; scaffold41034 GLEAN mRNA 104919 105332 0.777732 - . ID=CGI_10004653; scaffold41034 GLEAN promoter 105333 106332 0.777732 - . ID=CGI_10004653; scaffold41054 TRF Tandem_Repeat 3346 3636 286 + . . scaffold41054 TRF Tandem_Repeat 3351 3676 167 + . . scaffold41054 TRF Tandem_Repeat 7235 7290 53 + . . scaffold41054 GLEAN mRNA 15508 39181 0.98779 - . ID=CGI_10004673; scaffold41054 TRF Tandem_Repeat 16272 16303 64 + . . scaffold41054 WUBlastX DNA_hAT-Tip100 20144 20590 101 - . . scaffold41054 TRF Tandem_Repeat 23374 23526 162 + . . scaffold41054 TRF Tandem_Repeat 29527 29597 63 + . . scaffold41054 WUBlastX DNA_TcMar-Marin 35288 35695 211 - . . scaffold41054 WUBlastX DNA_TcMar-Marin 35884 36171 167 - . . scaffold41054 WUBlastX DNA_TcMar-Marin 36165 36542 153 - . . scaffold41054 TRF Tandem_Repeat 37088 37760 895 + . . scaffold41054 GLEAN promoter 38717 39716 0.996819 + . ID=CGI_10004674; scaffold41054 GLEAN promoter 39182 40181 0.98779 - . ID=CGI_10004673; scaffold41054 GLEAN mRNA 39717 40166 0.996819 + . ID=CGI_10004674; scaffold41054 WUBlastX LTR_DIRS 40851 41315 245 + . . scaffold41054 TRF Tandem_Repeat 51297 51348 68 + . . scaffold41054 TRF Tandem_Repeat 51297 51348 77 + . . scaffold41054 TRF Tandem_Repeat 57213 57272 57 + . . scaffold41054 TRF Tandem_Repeat 57221 57263 68 + . . scaffold41054 WUBlastX DNA_hAT-Tip100 76189 76275 37 - . . scaffold41054 WUBlastX DNA_hAT-Tip100 76248 76631 96 - . . scaffold41054 WUBlastX DNA_hAT-Tip100 76950 77231 48 - . . scaffold41054 TRF Tandem_Repeat 84383 85419 1501 + . . scaffold41054 TRF Tandem_Repeat 85581 85634 83 + . . scaffold41054 TRF Tandem_Repeat 85581 85634 74 + . . scaffold41054 TRF Tandem_Repeat 99084 99126 59 + . . scaffold41054 TRF Tandem_Repeat 106038 106089 104 + . . scaffold41064 TRF Tandem_Repeat 4241 4278 76 + . . scaffold41064 GLEAN promoter 4721 5720 1 + . ID=CGI_10004654; scaffold41064 GLEAN mRNA 5721 15320 1 + . ID=CGI_10004654; scaffold41064 TRF Tandem_Repeat 7562 8321 475 + . . scaffold41064 TRF Tandem_Repeat 8643 9140 621 + . . scaffold41064 TRF Tandem_Repeat 8672 9140 598 + . . scaffold41064 TRF Tandem_Repeat 8704 8907 98 + . . scaffold41064 GLEAN promoter 14757 15756 1 + . ID=CGI_10004655; scaffold41064 TRF Tandem_Repeat 15590 15679 114 + . . scaffold41064 GLEAN mRNA 15757 22178 1 + . ID=CGI_10004655; scaffold41064 TRF Tandem_Repeat 19929 20069 212 + . . scaffold41064 GLEAN mRNA 24043 43070 0.889072 - . ID=CGI_10004656; scaffold41064 TRF Tandem_Repeat 28718 28807 171 + . . scaffold41064 TRF Tandem_Repeat 30048 30187 253 + . . scaffold41064 TRF Tandem_Repeat 30202 30590 360 + . . scaffold41064 TRF Tandem_Repeat 32022 32065 88 + . . scaffold41064 GLEAN promoter 43071 44070 0.889072 - . ID=CGI_10004656; scaffold41064 GLEAN promoter 43188 44187 1 + . ID=CGI_10004657; scaffold41064 GLEAN mRNA 44188 44754 1 + . ID=CGI_10004657; scaffold41064 GLEAN promoter 44489 45488 0.889923 + . ID=CGI_10004658; scaffold41064 GLEAN mRNA 45489 52035 0.889923 + . ID=CGI_10004658; scaffold41064 TRF Tandem_Repeat 50008 50245 169 + . . scaffold41064 TRF Tandem_Repeat 50261 51307 856 + . . scaffold41064 GLEAN promoter 53358 54357 0.8895 + . ID=CGI_10004659; scaffold41064 GLEAN mRNA 54358 60692 0.8895 + . ID=CGI_10004659; scaffold41064 TRF Tandem_Repeat 55576 55600 50 + . . scaffold41064 TRF Tandem_Repeat 58470 58518 89 + . . scaffold41064 GLEAN promoter 61191 62190 1 + . ID=CGI_10004660; scaffold41064 GLEAN mRNA 62191 63465 1 + . ID=CGI_10004660; scaffold41064 TRF Tandem_Repeat 67037 67969 1382 + . . scaffold41064 GLEAN mRNA 69881 79028 0.989781 - . ID=CGI_10004661; scaffold41064 GLEAN promoter 79029 80028 0.989781 - . ID=CGI_10004661; scaffold41064 TRF Tandem_Repeat 82118 82164 58 + . . scaffold41064 TRF Tandem_Repeat 87037 87073 56 + . . scaffold41064 TRF Tandem_Repeat 96930 96972 59 + . . scaffold41064 WUBlastX DNA_Sola 97976 98155 50 + . . scaffold41064 WUBlastX DNA_Sola 98015 98155 75 + . . scaffold41064 WUBlastX DNA_Sola 98514 98678 23 + . . scaffold41064 WUBlastX DNA_Sola 98731 98952 121 + . . scaffold41064 TRF Tandem_Repeat 99127 99213 93 + . . scaffold41064 TRF Tandem_Repeat 99127 99190 56 + . . scaffold41064 WUBlastX DNA_Crypton 99683 99898 43 + . . scaffold41064 WUBlastX DNA_Crypton 100464 100718 60 + . . scaffold41064 TRF Tandem_Repeat 102193 102254 108 + . . scaffold41082 TRF Tandem_Repeat 27474 27730 433 + . . scaffold41082 TRF Tandem_Repeat 29914 29958 54 + . . scaffold41082 GLEAN promoter 38178 39177 0.255503 + . ID=CGI_10004676; scaffold41082 TRF Tandem_Repeat 38854 39171 582 + . . scaffold41082 TRF Tandem_Repeat 38856 39146 134 + . . scaffold41082 GLEAN mRNA 39178 49364 0.255503 + . ID=CGI_10004676; scaffold41082 TRF Tandem_Repeat 53034 53150 121 + . . scaffold41082 TRF Tandem_Repeat 55107 55193 174 + . . scaffold41082 WUBlastX LINE_Jockey 55860 56441 62 - . . scaffold41082 WUBlastX LINE_CR1 55893 56354 98 - . . scaffold41082 WUBlastX LINE_RTE-X 55968 56363 133 - . . scaffold41082 WUBlastX LINE_RTE-X 56577 56906 37 - . . scaffold41082 WUBlastX LINE_L1 56688 57128 88 - . . scaffold41082 WUBlastX LINE_RTE-X 56718 57044 88 - . . scaffold41082 WUBlastX LINE_CR1 56718 57221 61 - . . scaffold41082 WUBlastX LINE_Proto2 57187 57345 47 - . . scaffold41082 WUBlastX LINE_Proto2 57254 58084 51 - . . scaffold41082 WUBlastX LINE_Proto2 57458 58084 88 - . . scaffold41082 WUBlastX LINE_Jockey 58030 58311 38 - . . scaffold41082 TRF Tandem_Repeat 60978 61035 116 + . . scaffold41082 TRF Tandem_Repeat 63262 63309 96 + . . scaffold41082 GLEAN mRNA 75191 75532 0.999999 - . ID=CGI_10004677; scaffold41082 GLEAN promoter 75533 76532 0.999999 - . ID=CGI_10004677; scaffold41082 TRF Tandem_Repeat 83152 83198 94 + . . scaffold41082 GLEAN mRNA 87736 92371 0.999996 - . ID=CGI_10004678; scaffold41082 GLEAN promoter 92372 93371 0.999996 - . ID=CGI_10004678; scaffold41082 GLEAN promoter 98188 99187 1 + . ID=CGI_10004679; scaffold41082 GLEAN mRNA 99188 107048 1 + . ID=CGI_10004679; scaffold41082 TRF Tandem_Repeat 102522 102554 57 + . . scaffold41086 WUBlastX LINE_L1-Tx1 6443 6955 40 + . . scaffold41086 WUBlastX LINE_L1-Tx1 6554 7114 64 + . . scaffold41086 WUBlastX LINE_L1-Tx1 6638 6961 77 + . . scaffold41086 WUBlastX LINE_L2 10179 10622 117 + . . scaffold41086 WUBlastX LINE_L2 10637 10879 100 + . . scaffold41086 WUBlastX LINE_L2 10640 10843 106 + . . scaffold41086 WUBlastX LTR_Pao 11184 12035 334 + . . scaffold41086 WUBlastX LTR_Pao 11728 12474 104 + . . scaffold41086 WUBlastX LTR_Pao 12516 12887 30 + . . scaffold41086 WUBlastX LTR_Pao 12609 12902 257 + . . scaffold41086 WUBlastX LTR_Pao 12917 13207 144 + . . scaffold41086 WUBlastX LTR_Pao 13231 13305 21 + . . scaffold41086 WUBlastX LTR_Pao 13243 13308 27 + . . scaffold41086 WUBlastX LTR_Pao 13260 13502 54 + . . scaffold41086 WUBlastX LTR_Pao 13311 13526 151 + . . scaffold41086 WUBlastX LTR_Pao 13517 14338 769 + . . scaffold41086 WUBlastX LINE_L2 14639 14959 35 + . . scaffold41086 WUBlastX LINE_L2 14717 15055 111 + . . scaffold41086 WUBlastX LINE_L2 15000 15245 56 + . . scaffold41086 WUBlastX LINE_L2 15217 15828 63 + . . scaffold41086 WUBlastX LINE_L2 15316 15849 148 + . . scaffold41086 WUBlastX LINE_L2 15319 15633 173 + . . scaffold41086 WUBlastX LINE_L2 15355 16017 59 + . . scaffold41086 WUBlastX LINE_L2 15367 15738 175 + . . scaffold41086 TRF Tandem_Repeat 16665 17617 1311 + . . scaffold41086 GLEAN promoter 28272 29271 0.777738 + . ID=CGI_10004691; scaffold41086 GLEAN mRNA 29272 31783 0.777738 + . ID=CGI_10004691; scaffold41086 GLEAN mRNA 32480 35810 0.999351 - . ID=CGI_10004692; scaffold41086 TRF Tandem_Repeat 33763 33830 136 + . . scaffold41086 GLEAN promoter 35811 36810 0.999351 - . ID=CGI_10004692; scaffold41086 GLEAN mRNA 36300 43919 0.998497 - . ID=CGI_10004693; scaffold41086 TRF Tandem_Repeat 36842 36978 211 + . . scaffold41086 TRF Tandem_Repeat 42210 42246 74 + . . scaffold41086 GLEAN promoter 42615 43614 0.592889 + . ID=CGI_10004694; scaffold41086 GLEAN mRNA 43615 65556 0.592889 + . ID=CGI_10004694; scaffold41086 GLEAN promoter 43920 44919 0.998497 - . ID=CGI_10004693; scaffold41086 GLEAN mRNA 53217 54832 0.999672 - . ID=CGI_10004695; scaffold41086 GLEAN promoter 54833 55832 0.999672 - . ID=CGI_10004695; scaffold41086 WUBlastX DNA_Maverick 67556 67615 29 + . . scaffold41086 WUBlastX DNA_Maverick 67611 68000 259 + . . scaffold41086 WUBlastX DNA_Maverick 68006 68197 115 + . . scaffold41086 WUBlastX LTR_Copia 68319 68915 49 + . . scaffold41086 WUBlastX DNA_Maverick 68454 69371 509 + . . scaffold41086 TRF Tandem_Repeat 69605 69639 70 + . . scaffold41086 WUBlastX DNA_Maverick 69709 69819 55 + . . scaffold41086 TRF Tandem_Repeat 69845 69983 107 + . . scaffold41086 TRF Tandem_Repeat 70958 71091 101 + . . scaffold41086 WUBlastX DNA_Maverick 71134 71646 346 + . . scaffold41086 WUBlastX DNA_Maverick 72746 72943 52 - . . scaffold41086 WUBlastX DNA_Maverick 72914 73114 62 - . . scaffold41086 WUBlastX DNA_Maverick 73144 73371 99 - . . scaffold41086 WUBlastX DNA_Maverick 73278 73799 236 - . . scaffold41086 WUBlastX DNA_Maverick 73368 73802 262 - . . scaffold41086 GLEAN mRNA 74064 74309 1 - . ID=CGI_10004697; scaffold41086 GLEAN promoter 74310 75309 1 - . ID=CGI_10004697; scaffold41086 TRF Tandem_Repeat 76811 77984 1151 + . . scaffold41086 TRF Tandem_Repeat 78253 78308 112 + . . scaffold41086 WUBlastX LINE_Penelope 83449 83901 30 - . . scaffold41086 WUBlastX LINE_Penelope 83915 84013 27 - . . scaffold41090 GLEAN promoter 64988 65987 0.408821 + . ID=CGI_10004704; scaffold41090 GLEAN mRNA 65988 71075 0.408821 + . ID=CGI_10004704; scaffold41090 GLEAN promoter 99530 100529 0.727757 + . ID=CGI_10004705; scaffold41090 GLEAN mRNA 100530 105874 0.727757 + . ID=CGI_10004705; scaffold411 GLEAN mRNA 4524 10202 0.993907 - . ID=CGI_10001102; scaffold411 GLEAN promoter 10203 11202 0.993907 - . ID=CGI_10001102; scaffold41136 TRF Tandem_Repeat 2438 2469 64 + . . scaffold41136 GLEAN promoter 4469 5468 0.49659 + . ID=CGI_10004725; scaffold41136 GLEAN mRNA 5444 17786 0.93749 - . ID=CGI_10004724; scaffold41136 GLEAN mRNA 5469 74857 0.49659 + . ID=CGI_10004725; scaffold41136 TRF Tandem_Repeat 13864 13908 72 + . . scaffold41136 GLEAN promoter 17787 18786 0.93749 - . ID=CGI_10004724; scaffold41136 TRF Tandem_Repeat 25736 25774 51 + . . scaffold41136 TRF Tandem_Repeat 25944 26799 1298 + . . scaffold41136 TRF Tandem_Repeat 42617 42644 56 + . . scaffold41136 TRF Tandem_Repeat 47055 47117 117 + . . scaffold41136 TRF Tandem_Repeat 66318 66369 59 + . . scaffold41136 TRF Tandem_Repeat 66323 66372 64 + . . scaffold41136 TRF Tandem_Repeat 66343 66372 51 + . . scaffold41136 TRF Tandem_Repeat 69605 69640 72 + . . scaffold41136 TRF Tandem_Repeat 69951 69983 66 + . . scaffold41136 TRF Tandem_Repeat 74043 74098 112 + . . scaffold41136 TRF Tandem_Repeat 76555 76596 59 + . . scaffold41136 WUBlastX LINE_L1-Tx1 89388 89807 22 - . . scaffold41136 WUBlastX LINE_L1-Tx1 89490 89948 44 - . . scaffold41136 WUBlastX LINE_L1-Tx1 89571 89954 56 - . . scaffold41136 TRF Tandem_Repeat 90878 90918 82 + . . scaffold41136 GLEAN promoter 97121 98120 0.499337 + . ID=CGI_10004726; scaffold41136 GLEAN mRNA 98121 105914 0.499337 + . ID=CGI_10004726; scaffold41162 GLEAN promoter 2858 3857 0.81416 + . ID=CGI_10004774; scaffold41162 GLEAN mRNA 3858 10781 0.81416 + . ID=CGI_10004774; scaffold41162 TRF Tandem_Repeat 4895 5860 1468 + . . scaffold41162 TRF Tandem_Repeat 10419 10465 94 + . . scaffold41162 TRF Tandem_Repeat 23277 23312 63 + . . scaffold41162 GLEAN promoter 68250 69249 0.651134 + . ID=CGI_10004776; scaffold41162 WUBlastX LINE_L1-Tx1 68278 68811 52 + . . scaffold41162 WUBlastX LINE_L1-Tx1 68662 69027 46 + . . scaffold41162 WUBlastX LINE_L1-Tx1 69062 69211 22 + . . scaffold41162 GLEAN mRNA 69250 72340 0.651134 + . ID=CGI_10004776; scaffold41162 WUBlastX DNA_IS4EU 70872 71267 76 + . . scaffold41162 WUBlastX DNA_IS4EU 71457 71618 27 + . . scaffold41162 GLEAN promoter 72852 73851 0.526733 + . ID=CGI_10004777; scaffold41162 GLEAN mRNA 73852 107906 0.526733 + . ID=CGI_10004777; scaffold41162 WUBlastX LTR_Gypsy 88562 89326 185 - . . scaffold41162 WUBlastX LTR_Gypsy-Cigr 88697 89347 315 - . . scaffold41162 WUBlastX LTR_Gypsy 88937 90127 87 - . . scaffold41162 WUBlastX LTR_Gypsy-Cigr 89296 89577 147 - . . scaffold41162 WUBlastX LTR_Gypsy-Cigr 89332 89649 145 - . . scaffold41162 WUBlastX LTR_Gypsy-Cigr 89894 90043 132 - . . scaffold41162 WUBlastX LTR_Gypsy 90045 90170 113 - . . scaffold41162 WUBlastX LTR_ERV1 90198 90443 27 - . . scaffold41162 TRF Tandem_Repeat 93607 94280 685 + . . scaffold41162 TRF Tandem_Repeat 108311 108366 103 + . . scaffold41164 GLEAN promoter 4127 5126 0.983931 + . ID=CGI_10004759; scaffold41164 GLEAN mRNA 5127 5360 0.983931 + . ID=CGI_10004759; scaffold41164 TRF Tandem_Repeat 6844 6927 168 + . . scaffold41164 GLEAN promoter 7070 8069 0.995863 + . ID=CGI_10004760; scaffold41164 GLEAN mRNA 8070 33886 0.995863 + . ID=CGI_10004760; scaffold41164 TRF Tandem_Repeat 19457 19528 135 + . . scaffold41164 TRF Tandem_Repeat 20936 21043 128 + . . scaffold41164 GLEAN promoter 41098 42097 0.999053 + . ID=CGI_10004761; scaffold41164 WUBlastX DNA_hAT 41297 42061 144 + . . scaffold41164 GLEAN mRNA 42098 45655 0.999053 + . ID=CGI_10004761; scaffold41164 WUBlastX DNA_hAT 44968 45108 66 + . . scaffold41164 WUBlastX DNA_hAT 45455 45652 64 + . . scaffold41164 GLEAN promoter 47981 48980 0.999384 + . ID=CGI_10004762; scaffold41164 GLEAN mRNA 48981 54290 0.999384 + . ID=CGI_10004762; scaffold41164 TRF Tandem_Repeat 60901 60933 66 + . . scaffold41164 TRF Tandem_Repeat 62890 63082 127 + . . scaffold41164 TRF Tandem_Repeat 63241 63656 245 + . . scaffold41164 TRF Tandem_Repeat 63243 63401 255 + . . scaffold41164 TRF Tandem_Repeat 66676 66761 172 + . . scaffold41164 TRF Tandem_Repeat 69525 69619 62 + . . scaffold41164 GLEAN promoter 69551 70550 0.920404 + . ID=CGI_10004763; scaffold41164 TRF Tandem_Repeat 69572 69619 89 + . . scaffold41164 GLEAN mRNA 70551 74592 0.920404 + . ID=CGI_10004763; scaffold41164 GLEAN mRNA 83753 104051 0.95986 - . ID=CGI_10004764; scaffold41164 WUBlastX LINE_RTE-X 86755 87042 45 + . . scaffold41164 WUBlastX LINE_RTE-X 86818 87090 76 + . . scaffold41164 WUBlastX LINE_RTE-X 86818 87024 84 + . . scaffold41164 TRF Tandem_Repeat 94194 94247 108 + . . scaffold41164 TRF Tandem_Repeat 99688 99738 93 + . . scaffold41164 GLEAN promoter 104052 105051 0.95986 - . ID=CGI_10004764; scaffold41174 WUBlastX DNA_hAT-Tip100 1 897 468 - . . scaffold41174 WUBlastX DNA_hAT-Tip100 817 957 38 - . . scaffold41174 TRF Tandem_Repeat 36528 37306 1113 + . . scaffold41174 GLEAN mRNA 37943 88980 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 39079 40663 2176 + . . scaffold41174 TRF Tandem_Repeat 39803 40663 1085 + . . scaffold41174 TRF Tandem_Repeat 41354 41470 94 + . . scaffold41174 TRF Tandem_Repeat 41892 41943 95 + . . scaffold41174 TRF Tandem_Repeat 57459 57491 66 + . . scaffold41174 TRF Tandem_Repeat 58556 58587 64 + . . scaffold41174 TRF Tandem_Repeat 60706 61429 1000 + . . scaffold41174 WUBlastX LINE_RTE-X 61484 62086 103 + . . scaffold41174 WUBlastX LINE_RTE-X 61610 61990 114 + . . scaffold41174 TRF Tandem_Repeat 66656 66721 50 + . . scaffold41174 TRF Tandem_Repeat 68746 68806 95 + . . scaffold41174 WUBlastX LINE_DRE 68925 69392 34 + . . scaffold41174 WUBlastX LINE_RTE-X 69000 69470 200 + . . scaffold41174 WUBlastX LINE_RTE-X 69401 69622 135 + . . scaffold41174 WUBlastX LINE_RTE-X 69562 70299 103 + . . scaffold41174 TRF Tandem_Repeat 82696 83316 489 + . . scaffold41174 TRF Tandem_Repeat 82697 83316 168 + . . scaffold41174 TRF Tandem_Repeat 83138 83336 267 + . . scaffold41174 TRF Tandem_Repeat 83352 83382 55 + . . scaffold41174 TRF Tandem_Repeat 86027 87114 1908 + . . scaffold41174 GLEAN promoter 88981 89980 0.479824 - . ID=CGI_10004794; scaffold41174 TRF Tandem_Repeat 94643 95462 1225 + . . scaffold41174 TRF Tandem_Repeat 97408 98492 1785 + . . scaffold41174 GLEAN mRNA 99928 111019 1 - . ID=CGI_10004795; scaffold41174 TRF Tandem_Repeat 102514 102558 63 + . . scaffold41174 TRF Tandem_Repeat 102514 102557 52 + . . scaffold41174 GLEAN promoter 111020 111403 1 - . ID=CGI_10004795; scaffold412 WUBlastX LINE_CR1-L2 911 1246 150 + . . scaffold412 WUBlastX LINE_CR1-L2 947 1723 97 + . . scaffold412 WUBlastX LINE_L2 947 1300 107 + . . scaffold412 GLEAN mRNA 12143 29320 0.387784 - . ID=CGI_10018557; scaffold412 TRF Tandem_Repeat 18165 18274 123 + . . scaffold412 TRF Tandem_Repeat 20153 20188 72 + . . scaffold412 TRF Tandem_Repeat 20477 20624 181 + . . scaffold412 TRF Tandem_Repeat 21114 21232 105 + . . scaffold412 TRF Tandem_Repeat 21116 21223 130 + . . scaffold412 GLEAN promoter 29321 30320 0.387784 - . ID=CGI_10018557; scaffold412 GLEAN mRNA 46669 47076 0.999353 - . ID=CGI_10018558; scaffold412 GLEAN promoter 47077 48076 0.999353 - . ID=CGI_10018558; scaffold412 GLEAN mRNA 49163 134272 0.261275 - . ID=CGI_10018559; scaffold412 TRF Tandem_Repeat 67769 67818 73 + . . scaffold412 TRF Tandem_Repeat 67769 67806 58 + . . scaffold412 WUBlastX LTR_Ngaro 73060 73275 67 + . . scaffold412 WUBlastX LTR_Ngaro 73099 73275 73 + . . scaffold412 WUBlastX LTR_Ngaro 73280 73465 92 + . . scaffold412 TRF Tandem_Repeat 79069 79127 55 + . . scaffold412 TRF Tandem_Repeat 79077 79140 74 + . . scaffold412 TRF Tandem_Repeat 102828 102870 86 + . . scaffold412 TRF Tandem_Repeat 104998 106175 1234 + . . scaffold412 TRF Tandem_Repeat 108491 108548 98 + . . scaffold412 TRF Tandem_Repeat 113168 113266 74 + . . scaffold412 TRF Tandem_Repeat 114926 114984 100 + . . scaffold412 TRF Tandem_Repeat 117488 118248 611 + . . scaffold412 WUBlastX LTR_Ngaro 124922 125329 45 + . . scaffold412 WUBlastX LTR_Ngaro 125024 125329 81 + . . scaffold412 TRF Tandem_Repeat 127544 127597 108 + . . scaffold412 TRF Tandem_Repeat 127727 127822 70 + . . scaffold412 TRF Tandem_Repeat 128156 128198 86 + . . scaffold412 TRF Tandem_Repeat 128252 128303 79 + . . scaffold412 TRF Tandem_Repeat 128369 128420 50 + . . scaffold412 TRF Tandem_Repeat 128524 128562 60 + . . scaffold412 TRF Tandem_Repeat 132486 132527 84 + . . scaffold412 TRF Tandem_Repeat 132897 132934 67 + . . scaffold412 GLEAN promoter 134273 135272 0.261275 - . ID=CGI_10018559; scaffold412 GLEAN mRNA 141227 160730 0.499998 - . ID=CGI_10018560; scaffold412 WUBlastX LINE_L1 143736 144794 423 + . . scaffold412 WUBlastX LINE_L1-Tx1 144786 145418 191 + . . scaffold412 WUBlastX LINE_L1-Tx1 145355 147283 650 + . . scaffold412 WUBlastX LINE_L1-Tx1 146273 147334 661 + . . scaffold412 WUBlastX LINE_L1-Tx1 147285 147680 120 + . . scaffold412 WUBlastX LINE_L1-Tx1 147285 147956 74 + . . scaffold412 WUBlastX LINE_L1-Tx1 147693 148022 72 + . . scaffold412 WUBlastX LINE_L1 148033 148224 43 + . . scaffold412 WUBlastX LINE_L1-Tx1 148042 148443 29 + . . scaffold412 WUBlastX LINE_L1 148096 148245 44 + . . scaffold412 TRF Tandem_Repeat 156425 156475 79 + . . scaffold412 GLEAN promoter 160731 161730 0.499998 - . ID=CGI_10018560; scaffold412 TRF Tandem_Repeat 169801 169905 69 + . . scaffold412 TRF Tandem_Repeat 177966 178000 61 + . . scaffold412 GLEAN mRNA 183742 184085 0.999999 - . ID=CGI_10018561; scaffold412 GLEAN promoter 184086 185085 0.999999 - . ID=CGI_10018561; scaffold412 GLEAN mRNA 192179 196920 1 - . ID=CGI_10018562; scaffold412 GLEAN promoter 196921 197920 1 - . ID=CGI_10018562; scaffold412 GLEAN mRNA 198711 213648 0.999939 - . ID=CGI_10018563; scaffold412 TRF Tandem_Repeat 208032 208096 121 + . . scaffold412 GLEAN promoter 213649 214648 0.999939 - . ID=CGI_10018563; scaffold412 TRF Tandem_Repeat 218936 218979 70 + . . scaffold412 TRF Tandem_Repeat 218949 218982 50 + . . scaffold412 TRF Tandem_Repeat 222841 222895 76 + . . scaffold412 GLEAN mRNA 227007 230841 1 - . ID=CGI_10018564; scaffold412 GLEAN promoter 230842 231841 1 - . ID=CGI_10018564; scaffold412 GLEAN promoter 230898 231897 1 + . ID=CGI_10018565; scaffold412 GLEAN mRNA 231898 235447 1 + . ID=CGI_10018565; scaffold412 GLEAN mRNA 237729 241563 1 - . ID=CGI_10018566; scaffold412 TRF Tandem_Repeat 239316 239359 52 + . . scaffold412 GLEAN promoter 241564 242563 1 - . ID=CGI_10018566; scaffold412 TRF Tandem_Repeat 241885 241915 53 + . . scaffold412 GLEAN mRNA 243518 247743 1 - . ID=CGI_10018567; scaffold412 GLEAN promoter 247109 248108 1 + . ID=CGI_10018568; scaffold412 GLEAN promoter 247744 248743 1 - . ID=CGI_10018567; scaffold412 GLEAN mRNA 248109 252137 1 + . ID=CGI_10018568; scaffold412 TRF Tandem_Repeat 249041 249081 82 + . . scaffold412 TRF Tandem_Repeat 253044 253805 928 + . . scaffold412 TRF Tandem_Repeat 254909 254959 79 + . . scaffold412 GLEAN mRNA 255395 263095 1 - . ID=CGI_10018569; scaffold412 GLEAN promoter 262542 263541 0.998274 + . ID=CGI_10018570; scaffold412 GLEAN promoter 263096 264095 1 - . ID=CGI_10018569; scaffold412 GLEAN mRNA 263542 266568 0.998274 + . ID=CGI_10018570; scaffold412 GLEAN promoter 268312 269311 0.997818 + . ID=CGI_10018571; scaffold412 GLEAN mRNA 269312 279045 0.997818 + . ID=CGI_10018571; scaffold412 TRF Tandem_Repeat 270643 270683 57 + . . scaffold412 TRF Tandem_Repeat 273296 273335 80 + . . scaffold412 GLEAN promoter 281427 282426 1 + . ID=CGI_10018572; scaffold412 GLEAN mRNA 282427 282648 1 + . ID=CGI_10018572; scaffold412 TRF Tandem_Repeat 285623 285649 54 + . . scaffold412 TRF Tandem_Repeat 285757 285833 154 + . . scaffold412 WUBlastX LINE_RTE-BovB 296190 296495 65 + . . scaffold412 WUBlastX LINE_RTE-BovB 296310 296522 95 + . . scaffold412 TRF Tandem_Repeat 298651 298926 132 + . . scaffold412 WUBlastX LTR_Gypsy 306211 307164 36 + . . scaffold412 WUBlastX LTR_Gypsy-Cigr 306394 307140 188 + . . scaffold412 WUBlastX LTR_Gypsy-Cigr 307078 307902 117 + . . scaffold412 WUBlastX LTR_Gypsy 307282 310647 1645 + . . scaffold412 WUBlastX LTR_Gypsy 307966 310728 1937 + . . scaffold412 WUBlastX LTR_Gypsy 309466 311007 445 + . . scaffold412 WUBlastX LTR_Copia 310958 311026 23 + . . scaffold412 TRF Tandem_Repeat 311246 311300 110 + . . scaffold412 GLEAN mRNA 327454 333686 0.936251 - . ID=CGI_10018573; scaffold412 GLEAN promoter 330345 331344 0.999351 + . ID=CGI_10018574; scaffold412 GLEAN mRNA 331345 348153 0.999351 + . ID=CGI_10018574; scaffold412 GLEAN promoter 333687 334686 0.936251 - . ID=CGI_10018573; scaffold412 TRF Tandem_Repeat 339626 339669 79 + . . scaffold412 GLEAN promoter 352940 353939 1 + . ID=CGI_10018575; scaffold412 TRF Tandem_Repeat 353366 353507 126 + . . scaffold412 GLEAN mRNA 353940 357444 1 + . ID=CGI_10018575; scaffold412 GLEAN promoter 358581 359580 1 + . ID=CGI_10018576; scaffold412 GLEAN mRNA 359581 364151 1 + . ID=CGI_10018576; scaffold412 WUBlastX LINE_RTE-BovB 368570 369001 333 - . . scaffold412 WUBlastX LINE_RTE-BovB 368683 370311 490 - . . scaffold412 WUBlastX LINE_RTE-BovB 368929 370359 1001 - . . scaffold412 WUBlastX LINE_RTE-BovB 370311 370430 36 - . . scaffold412 WUBlastX LINE_RTE-BovB 370379 370921 446 - . . scaffold412 WUBlastX LINE_RTE-BovB 370863 371006 128 - . . scaffold412 TRF Tandem_Repeat 374026 374060 52 + . . scaffold412 GLEAN promoter 379663 380662 0.999998 + . ID=CGI_10018577; scaffold412 TRF Tandem_Repeat 379829 380091 233 + . . scaffold412 WUBlastX LINE_CR1-L2 380657 380782 23 + . . scaffold412 GLEAN mRNA 380663 381094 0.999998 + . ID=CGI_10018577; scaffold412 WUBlastX LINE_Jockey 380809 380856 27 + . . scaffold412 WUBlastX LINE_RTE-X 381543 382136 265 + . . scaffold412 WUBlastX LINE_RTE-X 381630 382130 279 + . . scaffold412 WUBlastX LINE_I 381645 382244 71 + . . scaffold412 WUBlastX LINE_RTE-X 382139 382273 63 + . . scaffold412 WUBlastX LINE_L2 382169 382336 60 + . . scaffold412 WUBlastX LINE_L2 382205 382366 38 + . . scaffold412 WUBlastX LINE_RTE-X 382599 382853 21 + . . scaffold412 WUBlastX LINE_RTE-X 382765 383358 272 + . . scaffold412 WUBlastX LINE_RTE-X 382852 383352 292 + . . scaffold412 WUBlastX LINE_RTE-X 383361 383561 87 + . . scaffold412 WUBlastX LINE_RTE-X 383567 383743 129 + . . scaffold412 WUBlastX LINE_RTE-X 383579 383815 81 + . . scaffold412 WUBlastX LINE_RTE-X 383755 383946 42 + . . scaffold412 WUBlastX LINE_RTE-X 383818 383982 31 + . . scaffold412 WUBlastX LINE_RTE-X 385770 386066 124 + . . scaffold412 TRF Tandem_Repeat 387332 387472 192 + . . scaffold412 WUBlastX LTR_Gypsy 387502 388800 349 - . . scaffold412 TRF Tandem_Repeat 389888 390026 161 + . . scaffold412 TRF Tandem_Repeat 391833 392141 356 + . . scaffold412 TRF Tandem_Repeat 391834 392141 359 + . . scaffold412 TRF Tandem_Repeat 396351 396392 84 + . . scaffold412 TRF Tandem_Repeat 396730 396815 127 + . . scaffold412 TRF Tandem_Repeat 396730 396826 121 + . . scaffold412 WUBlastX LINE_L2 398847 399458 158 + . . scaffold412 TRF Tandem_Repeat 402639 402676 58 + . . scaffold412 WUBlastX LTR_Copia 406652 407095 78 - . . scaffold412 WUBlastX LTR_Gypsy 406721 407155 185 - . . scaffold412 WUBlastX LTR_Gypsy-Cigr 406787 407092 315 - . . scaffold412 WUBlastX LTR_Gypsy-Cigr 406948 408729 584 - . . scaffold412 WUBlastX LTR_Gypsy 408711 409493 362 - . . scaffold412 WUBlastX LTR_Gypsy-Cigr 408711 409298 438 - . . scaffold412 WUBlastX LTR_Gypsy 409517 409639 20 - . . scaffold412 WUBlastX LTR_Gypsy-Cigr 409656 410114 72 - . . scaffold412 WUBlastX DNA_IS4EU 411671 412183 20 + . . scaffold412 WUBlastX DNA_Kolobok-IS4 411806 412168 51 + . . scaffold412 WUBlastX DNA_IS4EU 412114 412581 225 + . . scaffold412 WUBlastX DNA_Kolobok-IS4 412162 412521 228 + . . scaffold412 WUBlastX DNA_IS4EU 412177 412749 219 + . . scaffold412 WUBlastX DNA_IS4EU 412972 413070 25 - . . scaffold412 WUBlastX DNA_IS4EU 413069 413641 94 - . . scaffold412 WUBlastX DNA_Kolobok-IS4 413132 413608 123 - . . scaffold412 WUBlastX DNA_IS4EU 413731 413982 47 - . . scaffold412 WUBlastX DNA_IS4EU 413794 414048 48 - . . scaffold412 WUBlastX DNA_IS4EU 414763 414924 24 - . . scaffold412 TRF Tandem_Repeat 418626 418673 87 + . . scaffold412 WUBlastX LTR_Gypsy 418677 419462 349 - . . scaffold412 WUBlastX LTR_Gypsy 419012 419740 256 - . . scaffold412 WUBlastX LTR_Gypsy 419734 419916 148 - . . scaffold412 WUBlastX LTR_Gypsy 419915 421450 682 - . . scaffold412 TRF Tandem_Repeat 422116 422177 71 + . . scaffold412 TRF Tandem_Repeat 422119 422170 77 + . . scaffold412 WUBlastX LINE_L1-Tx1 423434 423493 36 + . . scaffold412 GLEAN mRNA 430261 433740 0.99903 - . ID=CGI_10018579; scaffold412 GLEAN promoter 433741 434740 0.99903 - . ID=CGI_10018579; scaffold412 TRF Tandem_Repeat 434290 434333 72 + . . scaffold412 TRF Tandem_Repeat 434858 434887 60 + . . scaffold412 TRF Tandem_Repeat 435178 435247 122 + . . scaffold412 TRF Tandem_Repeat 435377 435440 128 + . . scaffold412 TRF Tandem_Repeat 435731 435768 76 + . . scaffold412 TRF Tandem_Repeat 436443 436477 56 + . . scaffold412 TRF Tandem_Repeat 444212 444251 73 + . . scaffold412 TRF Tandem_Repeat 444486 444616 140 + . . scaffold412 WUBlastX LINE_CR1 444808 446166 474 + . . scaffold412 WUBlastX LINE_CR1 445084 446205 861 + . . scaffold412 TRF Tandem_Repeat 449083 449135 106 + . . scaffold412 GLEAN promoter 452503 453502 0.999372 + . ID=CGI_10018580; scaffold412 GLEAN mRNA 453503 453967 0.999372 + . ID=CGI_10018580; scaffold412 TRF Tandem_Repeat 457144 457208 123 + . . scaffold412 GLEAN promoter 458155 459154 1 + . ID=CGI_10018581; scaffold412 GLEAN mRNA 459155 462747 1 + . ID=CGI_10018581; scaffold412 TRF Tandem_Repeat 464622 464660 78 + . . scaffold412 TRF Tandem_Repeat 466264 466293 51 + . . scaffold412 GLEAN promoter 468509 469508 0.999642 + . ID=CGI_10018582; scaffold412 GLEAN mRNA 469509 470966 0.999642 + . ID=CGI_10018582; scaffold412 TRF Tandem_Repeat 473814 473882 138 + . . scaffold412 GLEAN mRNA 475444 479022 0.999922 - . ID=CGI_10018583; scaffold412 WUBlastX LTR_Gypsy 477191 477412 54 - . . scaffold412 GLEAN promoter 479023 480022 0.999922 - . ID=CGI_10018583; scaffold412 TRF Tandem_Repeat 479238 479504 365 + . . scaffold412 TRF Tandem_Repeat 479253 479491 187 + . . scaffold412 GLEAN mRNA 481138 481717 1 - . ID=CGI_10018584; scaffold412 GLEAN promoter 481718 482717 1 - . ID=CGI_10018584; scaffold412 TRF Tandem_Repeat 483794 483969 226 + . . scaffold412 TRF Tandem_Repeat 485507 485697 312 + . . scaffold412 GLEAN promoter 486035 487034 1 + . ID=CGI_10018585; scaffold412 GLEAN mRNA 487035 489566 1 + . ID=CGI_10018585; scaffold412 TRF Tandem_Repeat 494762 494787 52 + . . scaffold412 TRF Tandem_Repeat 501341 501401 113 + . . scaffold412 TRF Tandem_Repeat 502109 502155 94 + . . scaffold412 GLEAN promoter 504617 505616 0.999997 + . ID=CGI_10018586; scaffold412 GLEAN mRNA 505617 507642 0.999997 + . ID=CGI_10018586; scaffold412 TRF Tandem_Repeat 516234 516591 392 + . . scaffold412 TRF Tandem_Repeat 516234 516591 474 + . . scaffold412 TRF Tandem_Repeat 522715 522791 154 + . . scaffold412 TRF Tandem_Repeat 524416 524459 70 + . . scaffold412 TRF Tandem_Repeat 524419 524457 69 + . . scaffold412 TRF Tandem_Repeat 524493 524538 65 + . . scaffold412 WUBlastX LTR_Ngaro 533032 533082 22 + . . scaffold412 WUBlastX LTR_Ngaro 533087 533458 45 + . . scaffold412 WUBlastX LTR_Ngaro 533481 533573 32 + . . scaffold412 GLEAN promoter 540005 541004 0.996011 + . ID=CGI_10018587; scaffold412 GLEAN mRNA 541005 550614 0.996011 + . ID=CGI_10018587; scaffold412 GLEAN mRNA 541182 543337 1 - . ID=CGI_10018588; scaffold412 TRF Tandem_Repeat 541350 541395 92 + . . scaffold412 TRF Tandem_Repeat 541507 541533 54 + . . scaffold412 GLEAN promoter 543338 544337 1 - . ID=CGI_10018588; scaffold412 TRF Tandem_Repeat 548748 548793 92 + . . scaffold412 TRF Tandem_Repeat 554635 554670 72 + . . scaffold412 TRF Tandem_Repeat 559419 559491 112 + . . scaffold412 TRF Tandem_Repeat 559563 559625 126 + . . scaffold41206 GLEAN promoter 7962 8961 0.544839 + . ID=CGI_10004789; scaffold41206 TRF Tandem_Repeat 8795 8901 142 + . . scaffold41206 GLEAN mRNA 8962 13360 0.544839 + . ID=CGI_10004789; scaffold41206 TRF Tandem_Repeat 13987 14476 739 + . . scaffold41206 TRF Tandem_Repeat 17338 17381 88 + . . scaffold41206 TRF Tandem_Repeat 18659 18706 96 + . . scaffold41206 TRF Tandem_Repeat 19394 19425 64 + . . scaffold41206 GLEAN promoter 22334 23333 0.99151 + . ID=CGI_10004791; scaffold41206 TRF Tandem_Repeat 23199 23229 53 + . . scaffold41206 GLEAN mRNA 23334 23555 0.99151 + . ID=CGI_10004791; scaffold41206 TRF Tandem_Repeat 32982 33012 53 + . . scaffold41206 TRF Tandem_Repeat 35753 37607 2433 + . . scaffold41206 TRF Tandem_Repeat 36780 36870 55 + . . scaffold41206 TRF Tandem_Repeat 36908 37325 76 + . . scaffold41206 TRF Tandem_Repeat 37028 37128 55 + . . scaffold41206 TRF Tandem_Repeat 37219 37573 77 + . . scaffold41206 TRF Tandem_Repeat 37598 38165 707 + . . scaffold41206 TRF Tandem_Repeat 37881 38030 82 + . . scaffold41206 TRF Tandem_Repeat 37992 38180 52 + . . scaffold41206 WUBlastX DNA_Zator 44335 44568 75 + . . scaffold41206 WUBlastX DNA_Zator 44550 45623 498 + . . scaffold41206 WUBlastX DNA_Zator 45592 46002 115 + . . scaffold41206 WUBlastX DNA_Zator 46095 46358 27 + . . scaffold41206 TRF Tandem_Repeat 50526 50584 111 + . . scaffold41206 WUBlastX LTR_Gypsy 58717 59013 68 + . . scaffold41206 WUBlastX LTR_Gypsy 58831 59064 77 + . . scaffold41206 WUBlastX LTR_Gypsy 59079 59774 424 + . . scaffold41206 WUBlastX LTR_Gypsy 59779 62016 1864 + . . scaffold41206 WUBlastX LTR_Copia 61432 62139 64 + . . scaffold41206 WUBlastX LTR_Gypsy 62506 62724 35 + . . scaffold41206 WUBlastX LTR_Copia 62678 62827 20 + . . scaffold41206 WUBlastX DNA_Zator 64003 64239 32 + . . scaffold41206 WUBlastX DNA_Zator 64322 66634 746 + . . scaffold41206 WUBlastX DNA_TcMar-Tc2 67637 67801 83 + . . scaffold41206 TRF Tandem_Repeat 79707 80529 1317 + . . scaffold41206 TRF Tandem_Repeat 86901 86931 62 + . . scaffold41206 GLEAN mRNA 89947 111236 0.995535 - . ID=CGI_10004793; scaffold41206 WUBlastX DNA_hAT-Blackja 92089 92313 50 - . . scaffold41206 TRF Tandem_Repeat 96001 96773 1189 + . . scaffold41206 GLEAN promoter 111237 111342 0.995535 - . ID=CGI_10004793; scaffold41210 GLEAN promoter 1 408 0.999993 + . ID=CGI_10004798; scaffold41210 GLEAN mRNA 409 13857 0.999993 + . ID=CGI_10004798; scaffold41210 WUBlastX LINE_RTE-X 4960 5112 31 - . . scaffold41210 TRF Tandem_Repeat 7413 7516 190 + . . scaffold41210 TRF Tandem_Repeat 10854 10885 55 + . . scaffold41210 GLEAN promoter 16177 17176 0.593367 + . ID=CGI_10004799; scaffold41210 GLEAN mRNA 17177 17877 0.593367 + . ID=CGI_10004799; scaffold41210 GLEAN mRNA 21861 27221 0.367284 - . ID=CGI_10004800; scaffold41210 GLEAN promoter 27222 28221 0.367284 - . ID=CGI_10004800; scaffold41210 GLEAN mRNA 31060 37480 0.999393 - . ID=CGI_10004801; scaffold41210 GLEAN promoter 37481 38480 0.999393 - . ID=CGI_10004801; scaffold41210 TRF Tandem_Repeat 42736 42782 94 + . . scaffold41210 TRF Tandem_Repeat 43022 43059 76 + . . scaffold41210 TRF Tandem_Repeat 44001 44030 60 + . . scaffold41210 TRF Tandem_Repeat 47812 47862 102 + . . scaffold41210 GLEAN mRNA 49034 49531 0.999999 - . ID=CGI_10004802; scaffold41210 GLEAN promoter 49532 50531 0.999999 - . ID=CGI_10004802; scaffold41210 TRF Tandem_Repeat 53236 53274 78 + . . scaffold41210 TRF Tandem_Repeat 53667 53708 84 + . . scaffold41210 TRF Tandem_Repeat 54543 54621 95 + . . scaffold41210 GLEAN mRNA 59969 74088 1 - . ID=CGI_10004803; scaffold41210 TRF Tandem_Repeat 70884 70924 82 + . . scaffold41210 GLEAN promoter 74089 75088 1 - . ID=CGI_10004803; scaffold41210 GLEAN promoter 87991 88990 1 + . ID=CGI_10004804; scaffold41210 GLEAN mRNA 88991 90957 1 + . ID=CGI_10004804; scaffold41210 TRF Tandem_Repeat 94437 94482 51 + . . scaffold41210 GLEAN promoter 95257 96256 0.748493 + . ID=CGI_10004805; scaffold41210 GLEAN mRNA 96257 97918 0.748493 + . ID=CGI_10004805; scaffold41210 TRF Tandem_Repeat 99915 99980 132 + . . scaffold41210 WUBlastX LTR_Gypsy 100660 101385 35 + . . scaffold41210 WUBlastX LTR_Gypsy 101065 101385 48 + . . scaffold41210 WUBlastX LTR_Gypsy 101113 101376 94 + . . scaffold41210 GLEAN promoter 101622 102621 0.732703 + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Copia 101818 102066 44 + . . scaffold41210 WUBlastX LTR_Copia 101947 102120 22 + . . scaffold41210 GLEAN promoter 102013 103012 0.801415 + . ID=CGI_10004807; scaffold41210 WUBlastX LTR_Gypsy 102241 102591 82 + . . scaffold41210 WUBlastX LTR_Gypsy-Cigr 102277 102654 72 + . . scaffold41210 WUBlastX LTR_Caulimoviru 102322 102795 26 + . . scaffold41210 GLEAN mRNA 102622 102807 0.732703 + . ID=CGI_10004806; scaffold41210 WUBlastX LTR_Gypsy 102673 102702 27 + . . scaffold41210 GLEAN mRNA 103013 104151 0.801415 + . ID=CGI_10004807; scaffold41210 TRF Tandem_Repeat 107299 108211 1193 + . . scaffold41210 TRF Tandem_Repeat 109620 109661 68 + . . scaffold41210 TRF Tandem_Repeat 109623 109660 51 + . . scaffold41210 WUBlastX LTR_Gypsy 110388 110777 239 + . . scaffold41210 WUBlastX LTR_Gypsy 110761 112032 552 + . . scaffold41212 WUBlastX LINE_L2 11819 11866 23 + . . scaffold41212 TRF Tandem_Repeat 12325 12384 66 + . . scaffold41212 TRF Tandem_Repeat 12334 12385 50 + . . scaffold41212 WUBlastX LINE_L2 12488 14113 286 + . . scaffold41212 GLEAN mRNA 16427 27992 0.999676 - . ID=CGI_10004811; scaffold41212 GLEAN promoter 27993 28992 0.999676 - . ID=CGI_10004811; scaffold41212 GLEAN mRNA 47988 51393 1 - . ID=CGI_10004812; scaffold41212 GLEAN promoter 51394 52393 1 - . ID=CGI_10004812; scaffold41212 TRF Tandem_Repeat 58986 59078 116 + . . scaffold41212 TRF Tandem_Repeat 70542 70604 126 + . . scaffold41212 GLEAN promoter 72017 73016 0.544852 + . ID=CGI_10004813; scaffold41212 GLEAN mRNA 73017 76675 0.544852 + . ID=CGI_10004813; scaffold41212 GLEAN promoter 75767 76766 0.999999 + . ID=CGI_10004814; scaffold41212 TRF Tandem_Repeat 76465 76546 78 + . . scaffold41212 GLEAN mRNA 76767 79247 0.999999 + . ID=CGI_10004814; scaffold41212 GLEAN promoter 78459 79458 1 + . ID=CGI_10004815; scaffold41212 GLEAN mRNA 79459 80610 1 + . ID=CGI_10004815; scaffold41212 TRF Tandem_Repeat 81756 82084 592 + . . scaffold41212 GLEAN promoter 97331 98330 0.992173 + . ID=CGI_10004816; scaffold41212 GLEAN mRNA 98331 104148 0.992173 + . ID=CGI_10004816; scaffold41212 TRF Tandem_Repeat 98662 98999 235 + . . scaffold41212 TRF Tandem_Repeat 98690 99003 352 + . . scaffold41212 TRF Tandem_Repeat 99009 99033 50 + . . scaffold41214 WUBlastX LINE_RTE-X 198 947 213 - . . scaffold41214 WUBlastX DNA_Harbinger 1219 1527 63 - . . scaffold41214 WUBlastX DNA_Harbinger 1267 1656 236 - . . scaffold41214 TRF Tandem_Repeat 2385 2436 104 + . . scaffold41214 TRF Tandem_Repeat 4635 4680 92 + . . scaffold41214 GLEAN mRNA 9719 10144 1 - . ID=CGI_10004808; scaffold41214 GLEAN promoter 10145 11144 1 - . ID=CGI_10004808; scaffold41214 GLEAN mRNA 10965 12942 1 - . ID=CGI_10004809; scaffold41214 GLEAN promoter 12943 13942 1 - . ID=CGI_10004809; scaffold41214 TRF Tandem_Repeat 15644 15695 104 + . . scaffold41214 TRF Tandem_Repeat 16248 16304 73 + . . scaffold41214 TRF Tandem_Repeat 22069 22133 130 + . . scaffold41214 TRF Tandem_Repeat 40130 41384 1793 + . . scaffold41214 TRF Tandem_Repeat 41408 41457 55 + . . scaffold41214 TRF Tandem_Repeat 41415 41462 51 + . . scaffold41214 TRF Tandem_Repeat 42351 42395 65 + . . scaffold41214 TRF Tandem_Repeat 42351 42394 61 + . . scaffold41214 TRF Tandem_Repeat 42569 42620 97 + . . scaffold41214 WUBlastX LINE_RTE-BovB 46371 46841 43 - . . scaffold41214 WUBlastX LINE_RTE-BovB 46449 46841 97 - . . scaffold41214 WUBlastX LINE_RTE-BovB 46621 47550 125 - . . scaffold41214 WUBlastX LINE_RTE-BovB 46933 47547 130 - . . scaffold41214 WUBlastX LINE_RTE-BovB 48960 49208 59 - . . scaffold41214 WUBlastX LINE_RTE-BovB 49192 50436 59 - . . scaffold41214 WUBlastX LINE_RTE-BovB 49634 49906 143 - . . scaffold41214 WUBlastX LINE_RTE-BovB 49655 49999 109 - . . scaffold41214 WUBlastX LINE_RTE-BovB 49897 50463 98 - . . scaffold41214 WUBlastX LINE_RTE-BovB 50584 50682 27 - . . scaffold41214 WUBlastX LINE_RTE-BovB 50584 50664 35 - . . scaffold41214 TRF Tandem_Repeat 61224 61859 1164 + . . scaffold41214 TRF Tandem_Repeat 63489 63559 90 + . . scaffold41214 TRF Tandem_Repeat 63498 63673 151 + . . scaffold41214 TRF Tandem_Repeat 63502 63696 151 + . . scaffold41214 TRF Tandem_Repeat 100774 100821 96 + . . scaffold41214 GLEAN promoter 106083 107082 0.932558 + . ID=CGI_10004810; scaffold41214 GLEAN mRNA 107083 111042 0.932558 + . ID=CGI_10004810; scaffold41214 TRF Tandem_Repeat 110152 110184 66 + . . scaffold41220 TRF Tandem_Repeat 2420 2462 86 + . . scaffold41220 GLEAN promoter 7907 8906 0.802536 + . ID=CGI_10004850; scaffold41220 GLEAN mRNA 8907 14799 0.802536 + . ID=CGI_10004850; scaffold41220 TRF Tandem_Repeat 10658 10714 114 + . . scaffold41220 TRF Tandem_Repeat 16593 16630 76 + . . scaffold41220 GLEAN mRNA 17210 24537 1 - . ID=CGI_10004851; scaffold41220 TRF Tandem_Repeat 22658 22718 113 + . . scaffold41220 GLEAN promoter 23830 24829 0.986894 + . ID=CGI_10004852; scaffold41220 GLEAN promoter 24538 25537 1 - . ID=CGI_10004851; scaffold41220 GLEAN mRNA 24830 27337 0.986894 + . ID=CGI_10004852; scaffold41220 GLEAN promoter 28012 29011 0.971049 + . ID=CGI_10004853; scaffold41220 GLEAN mRNA 29012 45032 0.971049 + . ID=CGI_10004853; scaffold41220 TRF Tandem_Repeat 31856 31927 144 + . . scaffold41220 GLEAN mRNA 40570 48680 0.999676 - . ID=CGI_10004854; scaffold41220 TRF Tandem_Repeat 43640 43986 419 + . . scaffold41220 TRF Tandem_Repeat 43640 44027 467 + . . scaffold41220 TRF Tandem_Repeat 43817 43986 88 + . . scaffold41220 GLEAN promoter 48681 49680 0.999676 - . ID=CGI_10004854; scaffold41220 TRF Tandem_Repeat 49911 49972 124 + . . scaffold41220 TRF Tandem_Repeat 56498 56551 99 + . . scaffold41220 GLEAN mRNA 56736 74140 0.470832 - . ID=CGI_10004855; scaffold41220 WUBlastX LINE_L2 71361 71672 40 - . . scaffold41220 GLEAN promoter 74141 75140 0.470832 - . ID=CGI_10004855; scaffold41220 GLEAN mRNA 74615 75663 0.64585 - . ID=CGI_10004856; scaffold41220 GLEAN promoter 74626 75625 0.998712 + . ID=CGI_10004857; scaffold41220 GLEAN mRNA 75626 87714 0.998712 + . ID=CGI_10004857; scaffold41220 GLEAN promoter 75664 76663 0.64585 - . ID=CGI_10004856; scaffold41220 GLEAN promoter 87714 88713 0.998466 + . ID=CGI_10004858; scaffold41220 GLEAN mRNA 88714 105812 0.998466 + . ID=CGI_10004858; scaffold41220 GLEAN mRNA 88732 90827 1 - . ID=CGI_10004859; scaffold41220 GLEAN promoter 90828 91827 1 - . ID=CGI_10004859; scaffold41220 TRF Tandem_Repeat 91090 91832 625 + . . scaffold41220 TRF Tandem_Repeat 91090 91832 788 + . . scaffold41220 TRF Tandem_Repeat 93299 93349 93 + . . scaffold41220 GLEAN mRNA 96492 105074 0.999973 - . ID=CGI_10004860; scaffold41220 TRF Tandem_Repeat 98992 100128 1530 + . . scaffold41220 TRF Tandem_Repeat 104571 104625 74 + . . scaffold41220 TRF Tandem_Repeat 104571 104624 90 + . . scaffold41220 GLEAN promoter 105075 106074 0.999973 - . ID=CGI_10004860; scaffold41220 TRF Tandem_Repeat 107588 107648 77 + . . scaffold41228 WUBlastX LINE_RTE-X 6995 7180 27 + . . scaffold41228 WUBlastX LINE_RTE-X 7390 7755 22 + . . scaffold41228 WUBlastX LINE_RTE-X 7447 7716 65 + . . scaffold41228 WUBlastX LINE_RTE-X 7501 7758 72 + . . scaffold41228 WUBlastX LINE_RTE-X 7564 7761 91 + . . scaffold41228 TRF Tandem_Repeat 12234 12274 82 + . . scaffold41228 GLEAN mRNA 12628 43602 0.144447 - . ID=CGI_10004861; scaffold41228 WUBlastX LINE_L2 15885 16544 76 + . . scaffold41228 WUBlastX LINE_L2 15957 16511 135 + . . scaffold41228 WUBlastX LINE_L1-Tx1 16862 18052 533 + . . scaffold41228 WUBlastX LINE_L1-Tx1 17788 18456 303 + . . scaffold41228 GLEAN promoter 43603 44602 0.144447 - . ID=CGI_10004861; scaffold41228 GLEAN promoter 44435 45434 0.999999 + . ID=CGI_10004862; scaffold41228 GLEAN mRNA 45435 48913 0.999999 + . ID=CGI_10004862; scaffold41228 GLEAN promoter 57289 58288 0.746799 + . ID=CGI_10004863; scaffold41228 TRF Tandem_Repeat 58049 58158 148 + . . scaffold41228 GLEAN mRNA 58289 63948 0.746799 + . ID=CGI_10004863; scaffold41228 TRF Tandem_Repeat 60477 60693 185 + . . scaffold41228 GLEAN promoter 68433 69432 0.777634 + . ID=CGI_10004864; scaffold41228 GLEAN mRNA 69433 73424 0.777634 + . ID=CGI_10004864; scaffold41228 TRF Tandem_Repeat 78656 78962 427 + . . scaffold41228 GLEAN promoter 90820 91819 0.999529 + . ID=CGI_10004865; scaffold41228 GLEAN mRNA 91820 96489 0.999529 + . ID=CGI_10004865; scaffold41228 GLEAN mRNA 97051 101336 1 - . ID=CGI_10004866; scaffold41228 GLEAN promoter 101337 102336 1 - . ID=CGI_10004866; scaffold41228 GLEAN mRNA 102939 112759 0.999676 - . ID=CGI_10004867; scaffold41228 GLEAN promoter 112760 112960 0.999676 - . ID=CGI_10004867; scaffold41242 GLEAN promoter 27835 28834 0.478775 + . ID=CGI_10004880; scaffold41242 WUBlastX LTR_Pao 27863 27976 33 + . . scaffold41242 WUBlastX LTR_Pao 27989 28141 32 + . . scaffold41242 WUBlastX LTR_Pao 28354 28635 42 + . . scaffold41242 GLEAN promoter 28519 29518 0.480836 + . ID=CGI_10004881; scaffold41242 WUBlastX LTR_Pao 28629 28688 24 + . . scaffold41242 GLEAN mRNA 28835 29434 0.478775 + . ID=CGI_10004880; scaffold41242 GLEAN promoter 29075 30074 0.999372 + . ID=CGI_10004882; scaffold41242 WUBlastX LTR_Gypsy 29405 30301 47 + . . scaffold41242 WUBlastX LTR_Gypsy 29411 29998 83 + . . scaffold41242 GLEAN mRNA 29519 30064 0.480836 + . ID=CGI_10004881; scaffold41242 GLEAN mRNA 30075 30290 0.999372 + . ID=CGI_10004882; scaffold41242 WUBlastX LTR_ERV-Lenti 30209 30325 57 + . . scaffold41242 WUBlastX LTR_Pao 31140 31451 55 + . . scaffold41242 WUBlastX LTR_Pao 31373 31624 119 + . . scaffold41242 WUBlastX LTR_Pao 31632 31751 23 + . . scaffold41242 WUBlastX LTR_Pao 31845 32069 81 + . . scaffold41242 WUBlastX LTR_Pao 32017 32265 52 + . . scaffold41242 WUBlastX LTR_Pao 32249 32611 72 + . . scaffold41242 WUBlastX LTR_Pao 32393 32620 102 + . . scaffold41242 WUBlastX LTR_Pao 32435 32683 82 + . . scaffold41242 TRF Tandem_Repeat 32684 32777 118 + . . scaffold41242 TRF Tandem_Repeat 34271 34416 103 + . . scaffold41242 TRF Tandem_Repeat 34326 34416 146 + . . scaffold41242 WUBlastX LTR_Pao 34487 34714 68 + . . scaffold41242 WUBlastX LTR_Pao 34711 35028 35 + . . scaffold41242 WUBlastX LTR_Pao 34717 35178 24 + . . scaffold41242 WUBlastX LTR_Pao 34771 35070 72 + . . scaffold41242 WUBlastX LTR_Pao 37690 37980 96 + . . scaffold41242 GLEAN mRNA 41897 42192 0.999855 - . ID=CGI_10004883; scaffold41242 GLEAN promoter 42193 43192 0.999855 - . ID=CGI_10004883; scaffold41242 TRF Tandem_Repeat 42817 42885 138 + . . scaffold41242 TRF Tandem_Repeat 49505 49534 51 + . . scaffold41242 TRF Tandem_Repeat 51161 51204 88 + . . scaffold41242 TRF Tandem_Repeat 51984 52020 74 + . . scaffold41242 GLEAN promoter 54763 55762 0.999676 + . ID=CGI_10004884; scaffold41242 GLEAN mRNA 55763 64955 0.999676 + . ID=CGI_10004884; scaffold41242 TRF Tandem_Repeat 59862 60869 1558 + . . scaffold41242 TRF Tandem_Repeat 61637 61664 56 + . . scaffold41242 GLEAN mRNA 67608 68492 0.575445 - . ID=CGI_10004885; scaffold41242 GLEAN promoter 68493 69492 0.575445 - . ID=CGI_10004885; scaffold41242 GLEAN mRNA 73243 80464 1 - . ID=CGI_10004886; scaffold41242 GLEAN promoter 80465 81464 1 - . ID=CGI_10004886; scaffold41242 GLEAN promoter 81292 82291 0.920529 + . ID=CGI_10004887; scaffold41242 GLEAN mRNA 82292 90328 0.920529 + . ID=CGI_10004887; scaffold41242 TRF Tandem_Repeat 83916 83964 89 + . . scaffold41242 TRF Tandem_Repeat 85796 85874 158 + . . scaffold41242 GLEAN mRNA 91456 93828 0.990264 - . ID=CGI_10004888; scaffold41242 GLEAN promoter 93829 94828 0.990264 - . ID=CGI_10004888; scaffold41242 GLEAN mRNA 97496 109439 0.170639 - . ID=CGI_10004889; scaffold41242 WUBlastX LINE_L1-Tx1 99802 100092 40 + . . scaffold41242 WUBlastX LINE_L1-Tx1 99895 100080 72 + . . scaffold41242 WUBlastX LINE_L1-Tx1 100129 100794 38 + . . scaffold41242 WUBlastX LINE_L1 100322 100459 77 + . . scaffold41242 WUBlastX LINE_L1 100477 100746 69 + . . scaffold41242 WUBlastX LINE_L1-Tx1 100537 100785 104 + . . scaffold41242 WUBlastX LINE_L1 100543 100953 28 + . . scaffold41242 WUBlastX LINE_L1 101063 101347 69 + . . scaffold41242 WUBlastX LINE_L1-Tx1 101117 101392 107 + . . scaffold41242 WUBlastX LINE_L1-Tx1 101123 101347 114 + . . scaffold41242 WUBlastX LINE_L1-Tx1 101942 102118 53 + . . scaffold41242 WUBlastX LINE_L1-Tx1 101942 102304 21 + . . scaffold41242 GLEAN promoter 109440 110439 0.170639 - . ID=CGI_10004889; scaffold41242 TRF Tandem_Repeat 113181 113330 90 + . . scaffold41248 TRF Tandem_Repeat 1041 1165 137 + . . scaffold41248 TRF Tandem_Repeat 1682 1840 196 + . . scaffold41248 WUBlastX LTR_Ngaro 15435 16199 205 + . . scaffold41248 WUBlastX LTR_Ngaro 15768 16325 81 + . . scaffold41248 WUBlastX LTR_Gypsy 16372 17325 20 + . . scaffold41248 WUBlastX LTR_Ngaro 16516 18117 1029 + . . scaffold41248 WUBlastX LTR_Ngaro 18087 18989 424 + . . scaffold41248 WUBlastX LINE_RTE-X 19315 19770 63 + . . scaffold41248 WUBlastX LINE_L1-Tx1 21266 21712 82 - . . scaffold41248 WUBlastX LINE_L1-Tx1 21338 21712 85 - . . scaffold41248 WUBlastX LINE_L1-Tx1 21610 22476 95 - . . scaffold41248 WUBlastX LINE_L1 21898 22464 110 - . . scaffold41248 WUBlastX LINE_L1-Tx1 22463 23581 494 - . . scaffold41248 WUBlastX LINE_L1-Tx1 23064 23900 228 - . . scaffold41248 WUBlastX LINE_L1-Tx1 23601 24107 63 - . . scaffold41248 TRF Tandem_Repeat 31102 31173 144 + . . scaffold41248 TRF Tandem_Repeat 31200 31230 62 + . . scaffold41248 TRF Tandem_Repeat 32557 32584 56 + . . scaffold41248 WUBlastX LTR_Ngaro 40618 40800 68 - . . scaffold41248 WUBlastX LTR_Ngaro 40624 40854 49 - . . scaffold41248 WUBlastX LTR_Ngaro 40775 40930 23 - . . scaffold41248 WUBlastX LTR_Ngaro 41064 41429 35 - . . scaffold41248 WUBlastX LTR_Ngaro 41073 41327 56 - . . scaffold41248 WUBlastX LTR_Ngaro 41990 42109 39 - . . scaffold41248 WUBlastX LTR_Ngaro 42118 42789 114 - . . scaffold41248 WUBlastX LTR_Ngaro 42534 42977 72 - . . scaffold41296 GLEAN mRNA 5403 5996 0.71999 - . ID=CGI_10004837; scaffold41296 GLEAN promoter 5997 6996 0.71999 - . ID=CGI_10004837; scaffold41296 GLEAN mRNA 6289 14069 0.719952 - . ID=CGI_10004838; scaffold41296 TRF Tandem_Repeat 9930 9974 90 + . . scaffold41296 TRF Tandem_Repeat 10439 10469 53 + . . scaffold41296 TRF Tandem_Repeat 12229 12976 1088 + . . scaffold41296 GLEAN promoter 14070 15069 0.719952 - . ID=CGI_10004838; scaffold41296 TRF Tandem_Repeat 14566 15328 808 + . . scaffold41296 GLEAN promoter 25625 26624 0.999999 + . ID=CGI_10004839; scaffold41296 GLEAN mRNA 26625 37526 0.999999 + . ID=CGI_10004839; scaffold41296 GLEAN mRNA 49080 53344 0.999828 - . ID=CGI_10004840; scaffold41296 GLEAN promoter 53345 54344 0.999828 - . ID=CGI_10004840; scaffold41296 TRF Tandem_Repeat 55484 55539 112 + . . scaffold41296 TRF Tandem_Repeat 55744 55800 105 + . . scaffold41296 TRF Tandem_Repeat 58482 58531 86 + . . scaffold41296 GLEAN mRNA 59589 101977 0.3331 - . ID=CGI_10004841; scaffold41296 TRF Tandem_Repeat 64666 64821 163 + . . scaffold41296 TRF Tandem_Repeat 67044 67628 699 + . . scaffold41296 TRF Tandem_Repeat 67051 67628 674 + . . scaffold41296 TRF Tandem_Repeat 74173 75120 1441 + . . scaffold41296 TRF Tandem_Repeat 88321 88387 134 + . . scaffold41296 GLEAN promoter 96823 97822 0.794402 + . ID=CGI_10004842; scaffold41296 TRF Tandem_Repeat 97281 97529 331 + . . scaffold41296 TRF Tandem_Repeat 97281 97529 367 + . . scaffold41296 GLEAN mRNA 97823 107187 0.794402 + . ID=CGI_10004842; scaffold41296 GLEAN promoter 101978 102977 0.3331 - . ID=CGI_10004841; scaffold41296 WUBlastX LINE_RTE-X 107200 107610 32 - . . scaffold41296 WUBlastX LINE_RTE-X 107281 107838 48 - . . scaffold41296 GLEAN promoter 107813 108812 0.999303 + . ID=CGI_10004843; scaffold41296 GLEAN mRNA 108813 109487 0.999303 + . ID=CGI_10004843; scaffold41296 WUBlastX LTR_DIRS 111091 112137 554 - . . scaffold41296 WUBlastX LTR_DIRS 112008 112607 411 - . . scaffold413 TRF Tandem_Repeat 3146 4091 586 + . . scaffold413 TRF Tandem_Repeat 4643 4724 130 + . . scaffold413 TRF Tandem_Repeat 5072 5136 98 + . . scaffold413 TRF Tandem_Repeat 6282 6322 57 + . . scaffold413 TRF Tandem_Repeat 6317 6531 232 + . . scaffold413 TRF Tandem_Repeat 9579 9660 60 + . . scaffold413 GLEAN mRNA 9716 19114 0.940957 - . ID=CGI_10022791; scaffold413 WUBlastX LINE_L1-Tx1 10042 10311 22 - . . scaffold413 WUBlastX LINE_L1 10697 10900 22 - . . scaffold413 WUBlastX LINE_L1 10977 11804 190 - . . scaffold413 WUBlastX LINE_L1-Tx1 11815 12069 120 - . . scaffold413 WUBlastX LINE_L1-Tx1 11824 12150 40 - . . scaffold413 TRF Tandem_Repeat 15197 15388 119 + . . scaffold413 TRF Tandem_Repeat 15725 16007 478 + . . scaffold413 TRF Tandem_Repeat 16715 17399 1020 + . . scaffold413 TRF Tandem_Repeat 16784 17403 965 + . . scaffold413 GLEAN promoter 19115 20114 0.940957 - . ID=CGI_10022791; scaffold413 TRF Tandem_Repeat 19197 19483 121 + . . scaffold413 TRF Tandem_Repeat 19296 19483 187 + . . scaffold413 GLEAN mRNA 19519 43833 0.497504 - . ID=CGI_10022792; scaffold413 TRF Tandem_Repeat 20032 20221 184 + . . scaffold413 TRF Tandem_Repeat 21679 21885 360 + . . scaffold413 TRF Tandem_Repeat 24985 25198 290 + . . scaffold413 TRF Tandem_Repeat 24998 25198 267 + . . scaffold413 TRF Tandem_Repeat 31697 31915 251 + . . scaffold413 GLEAN promoter 43834 44833 0.497504 - . ID=CGI_10022792; scaffold413 TRF Tandem_Repeat 48972 49004 66 + . . scaffold413 TRF Tandem_Repeat 76545 76656 206 + . . scaffold413 GLEAN promoter 76611 77610 0.99886 + . ID=CGI_10022793; scaffold413 TRF Tandem_Repeat 77069 77119 102 + . . scaffold413 GLEAN mRNA 77611 79622 0.99886 + . ID=CGI_10022793; scaffold413 TRF Tandem_Repeat 77703 77736 68 + . . scaffold413 TRF Tandem_Repeat 79909 83909 5731 + . . scaffold413 TRF Tandem_Repeat 79909 83909 5769 + . . scaffold413 GLEAN promoter 89766 90765 1 + . ID=CGI_10022794; scaffold413 TRF Tandem_Repeat 90394 90666 300 + . . scaffold413 GLEAN mRNA 90766 97648 1 + . ID=CGI_10022794; scaffold413 GLEAN promoter 108407 109406 0.987604 + . ID=CGI_10022795; scaffold413 GLEAN mRNA 109407 117212 0.987604 + . ID=CGI_10022795; scaffold413 TRF Tandem_Repeat 122195 122228 59 + . . scaffold413 GLEAN promoter 137311 138310 0.482983 + . ID=CGI_10022796; scaffold413 GLEAN mRNA 138311 158515 0.482983 + . ID=CGI_10022796; scaffold413 TRF Tandem_Repeat 138702 138782 162 + . . scaffold413 TRF Tandem_Repeat 138885 138940 94 + . . scaffold413 WUBlastX LTR_Ngaro 143385 143561 106 - . . scaffold413 WUBlastX LTR_Ngaro 143602 143979 142 - . . scaffold413 WUBlastX LTR_Ngaro 143638 144108 128 - . . scaffold413 TRF Tandem_Repeat 144660 144982 170 + . . scaffold413 TRF Tandem_Repeat 144742 144988 458 + . . scaffold413 TRF Tandem_Repeat 152011 152041 62 + . . scaffold413 TRF Tandem_Repeat 153576 153619 88 + . . scaffold413 TRF Tandem_Repeat 159590 159639 100 + . . scaffold413 WUBlastX LINE_RTE-BovB 160190 160438 51 - . . scaffold413 TRF Tandem_Repeat 160816 160929 77 + . . scaffold413 WUBlastX LINE_RTE-BovB 161413 161574 41 - . . scaffold413 WUBlastX LINE_RTE-BovB 161422 161556 45 - . . scaffold413 TRF Tandem_Repeat 168644 168669 52 + . . scaffold413 TRF Tandem_Repeat 169903 169959 96 + . . scaffold413 TRF Tandem_Repeat 170929 171216 267 + . . scaffold413 TRF Tandem_Repeat 173316 173361 92 + . . scaffold413 TRF Tandem_Repeat 173460 173525 114 + . . scaffold413 TRF Tandem_Repeat 176546 176574 58 + . . scaffold413 TRF Tandem_Repeat 182970 183242 370 + . . scaffold413 TRF Tandem_Repeat 183250 183583 314 + . . scaffold413 TRF Tandem_Repeat 183411 183558 119 + . . scaffold413 TRF Tandem_Repeat 183708 184004 239 + . . scaffold413 TRF Tandem_Repeat 183848 184243 388 + . . scaffold413 TRF Tandem_Repeat 184484 184666 140 + . . scaffold413 GLEAN mRNA 190060 193566 0.999834 - . ID=CGI_10022797; scaffold413 GLEAN promoter 193567 194566 0.999834 - . ID=CGI_10022797; scaffold413 TRF Tandem_Repeat 197643 197693 84 + . . scaffold413 TRF Tandem_Repeat 197834 197867 59 + . . scaffold413 TRF Tandem_Repeat 198134 198175 84 + . . scaffold413 TRF Tandem_Repeat 198646 198686 55 + . . scaffold413 GLEAN mRNA 201994 220853 0.466271 - . ID=CGI_10022798; scaffold413 TRF Tandem_Repeat 205901 205939 60 + . . scaffold413 GLEAN promoter 220854 221853 0.466271 - . ID=CGI_10022798; scaffold413 WUBlastX LINE_RTE-X 222918 223358 54 + . . scaffold413 WUBlastX LINE_RTE-X 222981 223511 35 + . . scaffold413 TRF Tandem_Repeat 229797 229834 76 + . . scaffold413 TRF Tandem_Repeat 229931 230036 203 + . . scaffold413 TRF Tandem_Repeat 231077 231134 73 + . . scaffold413 TRF Tandem_Repeat 232311 232356 92 + . . scaffold413 WUBlastX LINE_L2 233362 233427 20 + . . scaffold413 WUBlastX LINE_CR1 234113 234682 21 + . . scaffold413 WUBlastX LINE_L1-Tx1 234257 235816 864 + . . scaffold413 WUBlastX LINE_L1-Tx1 235828 236130 32 + . . scaffold413 WUBlastX LINE_L1-Tx1 235981 236130 43 + . . scaffold413 WUBlastX LINE_L1-Tx1 236100 236366 42 + . . scaffold413 WUBlastX LINE_L1-Tx1 236103 236444 41 + . . scaffold413 TRF Tandem_Repeat 236578 236622 90 + . . scaffold413 TRF Tandem_Repeat 237983 238043 122 + . . scaffold413 TRF Tandem_Repeat 269494 269527 50 + . . scaffold413 TRF Tandem_Repeat 270276 270301 52 + . . scaffold413 WUBlastX LINE_L1 272033 272857 98 + . . scaffold413 WUBlastX LINE_CR1-L2 272210 272803 138 + . . scaffold413 WUBlastX LINE_L1-Tx1 273835 276741 777 + . . scaffold413 WUBlastX LINE_L1-Tx1 275410 276747 795 + . . scaffold413 WUBlastX RC_Helitron 276772 277494 266 - . . scaffold413 WUBlastX RC_Helitron 277006 278580 288 - . . scaffold413 WUBlastX RC_Helitron 277504 279696 310 - . . scaffold413 WUBlastX RC_Helitron 278500 280227 365 - . . scaffold413 WUBlastX RC_Helitron 278599 279693 401 - . . scaffold413 WUBlastX DNA_Helitron 279673 280605 22 - . . scaffold413 WUBlastX DNA_Helitron 280690 281292 51 - . . scaffold413 GLEAN mRNA 282387 291907 0.751516 - . ID=CGI_10022800; scaffold413 TRF Tandem_Repeat 284293 285383 1761 + . . scaffold413 TRF Tandem_Repeat 291635 291661 54 + . . scaffold413 TRF Tandem_Repeat 291661 291692 64 + . . scaffold413 GLEAN promoter 291908 292907 0.751516 - . ID=CGI_10022800; scaffold413 TRF Tandem_Repeat 296714 297006 330 + . . scaffold413 GLEAN mRNA 301187 301426 0.787672 - . ID=CGI_10022801; scaffold413 GLEAN promoter 301427 302426 0.787672 - . ID=CGI_10022801; scaffold413 TRF Tandem_Repeat 303334 303379 65 + . . scaffold413 WUBlastX LTR_Gypsy 303396 303557 23 + . . scaffold413 WUBlastX LTR_Copia 303447 303557 40 + . . scaffold413 WUBlastX LTR_Gypsy 303495 303617 32 + . . scaffold413 WUBlastX LTR_Gypsy 303858 305282 641 + . . scaffold413 WUBlastX LTR_Gypsy 304191 305276 657 + . . scaffold413 WUBlastX LTR_Gypsy 304452 305447 609 + . . scaffold413 WUBlastX LTR_Gypsy 305419 306348 523 + . . scaffold413 WUBlastX LTR_Gypsy 306372 307025 546 + . . scaffold413 TRF Tandem_Repeat 308646 308692 76 + . . scaffold413 TRF Tandem_Repeat 334721 334751 62 + . . scaffold413 TRF Tandem_Repeat 334752 334779 56 + . . scaffold413 WUBlastX LTR_Ngaro 337236 337409 77 - . . scaffold413 WUBlastX LTR_Ngaro 337423 337827 119 - . . scaffold413 WUBlastX LTR_Ngaro 337450 338172 52 - . . scaffold413 WUBlastX LTR_Ngaro 337486 338019 99 - . . scaffold413 TRF Tandem_Repeat 338531 338901 206 + . . scaffold413 TRF Tandem_Repeat 338622 338788 132 + . . scaffold413 GLEAN promoter 342743 343742 0.754008 + . ID=CGI_10022802; scaffold413 GLEAN mRNA 343743 346304 0.754008 + . ID=CGI_10022802; scaffold413 WUBlastX DNA_TcMar-Tc2 354025 354363 29 + . . scaffold413 WUBlastX DNA_TcMar-Tc2 354500 354649 34 + . . scaffold413 WUBlastX DNA_TcMar-Fot1 354829 355089 42 + . . scaffold413 WUBlastX DNA_TcMar-Tc2 354898 355176 86 + . . scaffold413 TRF Tandem_Repeat 372151 372192 59 + . . scaffold413 TRF Tandem_Repeat 378200 378243 88 + . . scaffold413 TRF Tandem_Repeat 383237 383282 92 + . . scaffold413 TRF Tandem_Repeat 404995 405052 64 + . . scaffold413 TRF Tandem_Repeat 405003 405052 55 + . . scaffold413 TRF Tandem_Repeat 416433 416481 98 + . . scaffold413 TRF Tandem_Repeat 419210 419248 78 + . . scaffold413 TRF Tandem_Repeat 424852 424901 91 + . . scaffold413 GLEAN mRNA 433824 456749 0.886159 - . ID=CGI_10022803; scaffold413 TRF Tandem_Repeat 436783 436877 120 + . . scaffold413 TRF Tandem_Repeat 437685 437772 117 + . . scaffold413 TRF Tandem_Repeat 443377 443411 70 + . . scaffold413 TRF Tandem_Repeat 452751 452814 128 + . . scaffold413 GLEAN promoter 456750 457749 0.886159 - . ID=CGI_10022803; scaffold413 WUBlastX LINE_CR1 458682 458996 40 - . . scaffold413 WUBlastX LINE_RTE-X 458769 459245 101 - . . scaffold413 WUBlastX LINE_RTE-X 458772 459347 73 - . . scaffold413 WUBlastX LINE_L2 458784 459461 24 - . . scaffold413 GLEAN mRNA 460601 479994 0.827983 - . ID=CGI_10022804; scaffold413 TRF Tandem_Repeat 470889 471009 128 + . . scaffold413 GLEAN promoter 479995 480994 0.827983 - . ID=CGI_10022804; scaffold413 GLEAN mRNA 489088 490056 0.995102 - . ID=CGI_10022805; scaffold413 WUBlastX DNA_MuDR 489232 489345 31 - . . scaffold413 WUBlastX DNA_MuDR 489637 490002 97 - . . scaffold413 GLEAN promoter 490057 491056 0.995102 - . ID=CGI_10022805; scaffold413 GLEAN promoter 490634 491633 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 491231 491270 80 + . . scaffold413 GLEAN mRNA 491634 513706 0.999675 + . ID=CGI_10022806; scaffold413 TRF Tandem_Repeat 493483 493566 123 + . . scaffold413 TRF Tandem_Repeat 497005 497168 73 + . . scaffold413 TRF Tandem_Repeat 497091 497185 140 + . . scaffold413 TRF Tandem_Repeat 499145 499274 217 + . . scaffold413 TRF Tandem_Repeat 499299 499876 511 + . . scaffold413 TRF Tandem_Repeat 500593 500853 280 + . . scaffold413 TRF Tandem_Repeat 504895 505802 1160 + . . scaffold413 TRF Tandem_Repeat 505180 505270 56 + . . scaffold413 TRF Tandem_Repeat 510842 511085 159 + . . scaffold413 TRF Tandem_Repeat 511121 511239 120 + . . scaffold413 TRF Tandem_Repeat 511124 511257 87 + . . scaffold413 GLEAN mRNA 518859 522982 0.673094 - . ID=CGI_10022807; scaffold413 GLEAN promoter 522983 523982 0.673094 - . ID=CGI_10022807; scaffold413 GLEAN promoter 530224 531223 1 + . ID=CGI_10022808; scaffold413 GLEAN mRNA 531224 532400 1 + . ID=CGI_10022808; scaffold413 GLEAN mRNA 533185 536556 0.546773 - . ID=CGI_10022809; scaffold413 TRF Tandem_Repeat 533656 534139 277 + . . scaffold413 GLEAN promoter 536557 537556 0.546773 - . ID=CGI_10022809; scaffold413 GLEAN promoter 552173 553172 0.824889 + . ID=CGI_10022810; scaffold413 GLEAN mRNA 553173 557512 0.824889 + . ID=CGI_10022810; scaffold413 WUBlastX LTR_Gypsy 553284 553412 20 + . . scaffold413 WUBlastX LTR_Gypsy 554487 555197 84 + . . scaffold413 GLEAN mRNA 557932 566897 1 - . ID=CGI_10022811; scaffold413 TRF Tandem_Repeat 563736 563967 112 + . . scaffold413 GLEAN promoter 566898 567897 1 - . ID=CGI_10022811; scaffold413 TRF Tandem_Repeat 567710 567777 127 + . . scaffold413 GLEAN mRNA 568479 569570 0.709214 - . ID=CGI_10022812; scaffold413 GLEAN promoter 569571 570570 0.709214 - . ID=CGI_10022812; scaffold413 GLEAN mRNA 570847 576261 1 - . ID=CGI_10022813; scaffold413 GLEAN promoter 575973 576972 0.992188 + . ID=CGI_10022814; scaffold413 TRF Tandem_Repeat 576047 576080 68 + . . scaffold413 GLEAN promoter 576262 577261 1 - . ID=CGI_10022813; scaffold413 GLEAN mRNA 576973 581784 0.992188 + . ID=CGI_10022814; scaffold413 GLEAN promoter 581267 582266 0.999351 + . ID=CGI_10022815; scaffold413 GLEAN mRNA 582267 586362 0.999351 + . ID=CGI_10022815; scaffold413 TRF Tandem_Repeat 587422 587527 68 + . . scaffold413 TRF Tandem_Repeat 587432 587646 385 + . . scaffold413 GLEAN promoter 588524 589523 0.99985 + . ID=CGI_10022816; scaffold413 GLEAN mRNA 589524 591570 0.99985 + . ID=CGI_10022816; scaffold413 TRF Tandem_Repeat 592890 592922 66 + . . scaffold413 TRF Tandem_Repeat 593315 593363 98 + . . scaffold413 GLEAN promoter 593818 594817 0.999998 + . ID=CGI_10022817; scaffold413 GLEAN mRNA 594818 596438 0.999998 + . ID=CGI_10022817; scaffold413 GLEAN mRNA 598956 608243 0.999671 - . ID=CGI_10022818; scaffold413 TRF Tandem_Repeat 604201 604386 165 + . . scaffold413 TRF Tandem_Repeat 604206 604346 219 + . . scaffold413 GLEAN promoter 608244 609243 0.999671 - . ID=CGI_10022818; scaffold413 TRF Tandem_Repeat 608687 608827 156 + . . scaffold413 GLEAN mRNA 608859 620642 0.999023 - . ID=CGI_10022819; scaffold413 GLEAN promoter 612461 613460 1 + . ID=CGI_10022820; scaffold413 GLEAN mRNA 613461 617471 1 + . ID=CGI_10022820; scaffold413 WUBlastX LTR_Pao 613585 613641 30 + . . scaffold413 WUBlastX LTR_Pao 613869 614033 146 + . . scaffold413 GLEAN promoter 620643 621642 0.999023 - . ID=CGI_10022819; scaffold413 GLEAN mRNA 622347 658634 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 626820 626849 60 + . . scaffold413 TRF Tandem_Repeat 632733 632770 76 + . . scaffold413 TRF Tandem_Repeat 634944 635014 69 + . . scaffold413 TRF Tandem_Repeat 634988 635282 527 + . . scaffold413 TRF Tandem_Repeat 635257 635329 53 + . . scaffold413 TRF Tandem_Repeat 635275 635350 52 + . . scaffold413 TRF Tandem_Repeat 640776 640809 50 + . . scaffold413 TRF Tandem_Repeat 651485 651525 82 + . . scaffold413 TRF Tandem_Repeat 654939 654982 54 + . . scaffold413 GLEAN promoter 658635 659634 0.909974 - . ID=CGI_10022821; scaffold413 TRF Tandem_Repeat 661065 661264 217 + . . scaffold413 GLEAN mRNA 678669 678986 0.999984 - . ID=CGI_10022822; scaffold413 GLEAN promoter 678987 679986 0.999984 - . ID=CGI_10022822; scaffold413 GLEAN promoter 682408 683407 0.52218 + . ID=CGI_10022823; scaffold413 GLEAN mRNA 683408 693888 0.52218 + . ID=CGI_10022823; scaffold413 GLEAN mRNA 696193 706407 0.84031 - . ID=CGI_10022824; scaffold413 GLEAN promoter 706408 707407 0.84031 - . ID=CGI_10022824; scaffold413 TRF Tandem_Repeat 706794 706830 74 + . . scaffold413 TRF Tandem_Repeat 709117 709804 1155 + . . scaffold413 TRF Tandem_Repeat 711038 711533 920 + . . scaffold413 GLEAN promoter 721790 722789 0.995871 + . ID=CGI_10022825; scaffold413 GLEAN mRNA 722790 725765 0.995871 + . ID=CGI_10022825; scaffold413 GLEAN mRNA 729457 747893 0.897312 - . ID=CGI_10022826; scaffold413 TRF Tandem_Repeat 733662 734985 1139 + . . scaffold413 TRF Tandem_Repeat 733700 733964 140 + . . scaffold413 TRF Tandem_Repeat 733720 733844 138 + . . scaffold413 WUBlastX LINE_L2 735698 736549 31 + . . scaffold413 WUBlastX LINE_CR1-L2 736004 736555 173 + . . scaffold413 WUBlastX LINE_CR1-L2 736088 737068 109 + . . scaffold413 WUBlastX LINE_CR1-L2 736088 736555 186 + . . scaffold413 WUBlastX LINE_CR1-L2 736542 736811 183 + . . scaffold413 WUBlastX LINE_L2 737068 737349 101 + . . scaffold413 GLEAN promoter 747894 748893 0.897312 - . ID=CGI_10022826; scaffold413 TRF Tandem_Repeat 759107 759137 62 + . . scaffold413 TRF Tandem_Repeat 768044 768096 106 + . . scaffold413 TRF Tandem_Repeat 768248 768311 76 + . . scaffold413 TRF Tandem_Repeat 768248 768329 60 + . . scaffold413 WUBlastX LINE_CR1 773139 774071 94 + . . scaffold413 WUBlastX LINE_CR1 773283 774071 472 + . . scaffold413 GLEAN promoter 784043 785042 0.475156 + . ID=CGI_10022827; scaffold413 GLEAN promoter 784564 785563 0.999056 + . ID=CGI_10022828; scaffold413 GLEAN mRNA 785043 785469 0.475156 + . ID=CGI_10022827; scaffold413 GLEAN mRNA 785564 789408 0.999056 + . ID=CGI_10022828; scaffold413 TRF Tandem_Repeat 791357 791407 50 + . . scaffold413 TRF Tandem_Repeat 791364 791407 54 + . . scaffold413 WUBlastX LINE_RTE-X 791584 794847 1029 - . . scaffold413 WUBlastX LINE_CR1 794512 794964 79 - . . scaffold413 WUBlastX LINE_L2 794623 795030 60 - . . scaffold41304 WUBlastX DNA_TcMar-Tc1 11253 11363 38 - . . scaffold41304 WUBlastX DNA_TcMar-Tc1 11323 11688 69 - . . scaffold41304 WUBlastX DNA_TcMar-Tc1 11395 11850 131 - . . scaffold41304 WUBlastX DNA_TcMar-Tc1 11407 11688 136 - . . scaffold41304 WUBlastX DNA_TcMar-Tc2 13972 14292 79 - . . scaffold41304 WUBlastX DNA_TcMar-Tc2 14077 14952 785 - . . scaffold41304 WUBlastX DNA_TcMar-Tc2 14095 15117 260 - . . scaffold41304 WUBlastX DNA_TcMar-Tc2 14942 15181 166 - . . scaffold41304 WUBlastX LTR_Ngaro 56096 56224 35 + . . scaffold41304 WUBlastX LTR_Ngaro 56268 56336 24 + . . scaffold41304 WUBlastX LTR_Ngaro 56351 56749 35 + . . scaffold41304 WUBlastX LTR_Ngaro 56526 57527 396 + . . scaffold41304 WUBlastX LTR_Ngaro 56778 57527 427 + . . scaffold41304 WUBlastX LTR_Ngaro 57527 57847 217 + . . scaffold41304 WUBlastX LTR_Ngaro 57841 58293 230 + . . scaffold41304 WUBlastX LTR_Ngaro 58430 59158 197 + . . scaffold41304 TRF Tandem_Repeat 61413 61476 56 + . . scaffold41304 TRF Tandem_Repeat 64051 64139 137 + . . scaffold41304 TRF Tandem_Repeat 64323 64356 50 + . . scaffold41304 WUBlastX LTR_Ngaro 70432 71481 93 + . . scaffold41304 WUBlastX LTR_Ngaro 70825 71475 154 + . . scaffold41304 WUBlastX LTR_Ngaro 71255 72055 242 + . . scaffold41304 WUBlastX LTR_Ngaro 71447 72052 343 + . . scaffold41304 WUBlastX LTR_Ngaro 72278 72484 60 + . . scaffold41304 WUBlastX LTR_Ngaro 72426 73259 425 + . . scaffold41304 WUBlastX LTR_Ngaro 73190 74047 88 + . . scaffold41304 WUBlastX LTR_Ngaro 74046 74147 55 + . . scaffold41304 TRF Tandem_Repeat 75180 75253 66 + . . scaffold41304 TRF Tandem_Repeat 75182 75251 51 + . . scaffold41304 WUBlastX LTR_Ngaro 80695 81564 76 + . . scaffold41304 WUBlastX LTR_Ngaro 81016 81564 120 + . . scaffold41304 WUBlastX LTR_Ngaro 81678 83264 376 + . . scaffold41304 WUBlastX LTR_Ngaro 81690 82790 705 + . . scaffold41304 WUBlastX LTR_Ngaro 83389 83613 27 + . . scaffold41304 WUBlastX LTR_Ngaro 83595 84095 147 + . . scaffold41304 WUBlastX LTR_Ngaro 84247 84606 140 + . . scaffold41304 WUBlastX LTR_Ngaro 84313 84600 144 + . . scaffold41304 WUBlastX LTR_Ngaro 94020 95192 313 + . . scaffold41304 WUBlastX LTR_Ngaro 94080 94853 387 + . . scaffold41304 WUBlastX LTR_Ngaro 95212 95442 111 + . . scaffold41304 WUBlastX LTR_Ngaro 95430 95630 98 + . . scaffold41304 WUBlastX LTR_Ngaro 95546 96457 155 + . . scaffold41304 TRF Tandem_Repeat 104693 104733 82 + . . scaffold41304 WUBlastX LTR_Ngaro 105316 105522 45 + . . scaffold41304 WUBlastX LINE_L1-Tx1 112223 112336 59 + . . scaffold41304 WUBlastX LINE_L1 112241 113743 941 + . . scaffold41304 WUBlastX LINE_Dong-R4 114567 114989 24 + . . scaffold41304 WUBlastX LINE_L1-Tx1 114642 115640 266 + . . scaffold41312 GLEAN promoter 7350 8349 1 + . ID=CGI_10004986; scaffold41312 TRF Tandem_Repeat 7933 7995 126 + . . scaffold41312 GLEAN mRNA 8350 12360 1 + . ID=CGI_10004986; scaffold41312 TRF Tandem_Repeat 9842 9940 173 + . . scaffold41312 TRF Tandem_Repeat 9940 10079 59 + . . scaffold41312 TRF Tandem_Repeat 10542 10659 69 + . . scaffold41312 TRF Tandem_Repeat 69004 69037 68 + . . scaffold41312 WUBlastX DNA_En-Spm 70696 72984 1234 + . . scaffold41312 TRF Tandem_Repeat 73213 73251 78 + . . scaffold41312 TRF Tandem_Repeat 77385 77418 50 + . . scaffold41312 TRF Tandem_Repeat 79493 79542 91 + . . scaffold41312 TRF Tandem_Repeat 79689 79727 78 + . . scaffold41312 GLEAN mRNA 82329 85110 0.990769 - . ID=CGI_10004987; scaffold41312 GLEAN promoter 85111 86110 0.990769 - . ID=CGI_10004987; scaffold41312 TRF Tandem_Repeat 86620 86647 56 + . . scaffold41312 GLEAN promoter 88565 89564 0.750094 + . ID=CGI_10004988; scaffold41312 GLEAN mRNA 89565 111137 0.750094 + . ID=CGI_10004988; scaffold41312 TRF Tandem_Repeat 102794 102828 70 + . . scaffold41312 TRF Tandem_Repeat 107530 107572 86 + . . scaffold41312 TRF Tandem_Repeat 111785 111866 80 + . . scaffold41312 TRF Tandem_Repeat 111788 111864 75 + . . scaffold41312 TRF Tandem_Repeat 111807 111865 52 + . . scaffold41316 GLEAN mRNA 25 6862 0.998221 - . ID=CGI_10004931; scaffold41316 TRF Tandem_Repeat 2091 2418 474 + . . scaffold41316 GLEAN promoter 6863 7862 0.998221 - . ID=CGI_10004931; scaffold41316 GLEAN promoter 8425 9424 0.889872 + . ID=CGI_10004932; scaffold41316 GLEAN mRNA 9425 36531 0.889872 + . ID=CGI_10004932; scaffold41316 TRF Tandem_Repeat 23628 23747 222 + . . scaffold41316 GLEAN mRNA 40256 49716 0.814164 - . ID=CGI_10004933; scaffold41316 TRF Tandem_Repeat 44779 44861 166 + . . scaffold41316 TRF Tandem_Repeat 47957 48022 123 + . . scaffold41316 GLEAN promoter 49693 50692 1 + . ID=CGI_10004934; scaffold41316 GLEAN promoter 49717 50716 0.814164 - . ID=CGI_10004933; scaffold41316 GLEAN mRNA 50693 56118 1 + . ID=CGI_10004934; scaffold41316 TRF Tandem_Repeat 55419 55470 50 + . . scaffold41316 WUBlastX LINE_L1 66094 66834 116 - . . scaffold41316 WUBlastX LINE_L2 67451 67678 35 - . . scaffold41316 TRF Tandem_Repeat 72088 72126 69 + . . scaffold41316 TRF Tandem_Repeat 72124 72210 174 + . . scaffold41316 TRF Tandem_Repeat 75623 75666 88 + . . scaffold41316 TRF Tandem_Repeat 82670 82797 78 + . . scaffold41316 TRF Tandem_Repeat 84660 84771 125 + . . scaffold41316 TRF Tandem_Repeat 89755 89837 52 + . . scaffold41316 WUBlastX LINE_L1 95565 96797 74 + . . scaffold41316 WUBlastX LINE_L1-Tx1 95577 96500 453 + . . scaffold41316 TRF Tandem_Repeat 100582 102514 2806 + . . scaffold41318 WUBlastX LINE_CR1-L2 2095 2517 51 + . . scaffold41318 WUBlastX LINE_L2 2290 2517 52 + . . scaffold41318 WUBlastX LINE_CR1-L2 2513 2713 33 + . . scaffold41318 TRF Tandem_Repeat 7174 7239 132 + . . scaffold41318 WUBlastX LTR_Ngaro 30349 30906 242 - . . scaffold41318 WUBlastX LTR_Ngaro 30978 31523 276 - . . scaffold41318 WUBlastX LTR_Ngaro 31309 32490 389 - . . scaffold41318 WUBlastX LTR_Ngaro 31522 32805 381 - . . scaffold41318 WUBlastX LTR_Ngaro 31525 32598 672 - . . scaffold41318 WUBlastX LTR_Ngaro 32765 33562 165 - . . scaffold41318 WUBlastX LTR_Ngaro 32780 33271 178 - . . scaffold41318 WUBlastX LINE_L1-Tx1 35825 36070 53 - . . scaffold41318 WUBlastX LINE_L1-Tx1 35870 36520 33 - . . scaffold41318 WUBlastX LINE_L1-Tx1 36016 36210 56 - . . scaffold41318 WUBlastX LINE_L1-Tx1 36371 36559 40 - . . scaffold41318 WUBlastX LINE_L1-Tx1 36467 36559 48 - . . scaffold41318 WUBlastX LINE_L1-Tx1 36783 37400 73 - . . scaffold41318 WUBlastX LINE_L1-Tx1 36863 37069 74 - . . scaffold41318 WUBlastX LINE_L1-Tx1 37399 39450 1016 - . . scaffold41318 TRF Tandem_Repeat 41966 41993 56 + . . scaffold41318 TRF Tandem_Repeat 41993 42029 74 + . . scaffold41318 WUBlastX LINE_RTE-X 51829 51933 40 + . . scaffold41318 GLEAN mRNA 62024 74741 0.999624 - . ID=CGI_10004985; scaffold41318 TRF Tandem_Repeat 63339 63395 114 + . . scaffold41318 TRF Tandem_Repeat 69704 69892 200 + . . scaffold41318 TRF Tandem_Repeat 69774 69891 130 + . . scaffold41318 TRF Tandem_Repeat 71445 71592 143 + . . scaffold41318 TRF Tandem_Repeat 74158 74188 53 + . . scaffold41318 GLEAN promoter 74742 75741 0.999624 - . ID=CGI_10004985; scaffold41318 WUBlastX DNA_Maverick 83214 83477 29 - . . scaffold41318 WUBlastX DNA_Maverick 83277 83477 148 - . . scaffold41318 TRF Tandem_Repeat 84560 84593 59 + . . scaffold41318 WUBlastX LINE_RTE-X 88874 89278 71 - . . scaffold41318 WUBlastX LINE_RTE-X 88979 89743 295 - . . scaffold41318 TRF Tandem_Repeat 90123 90205 91 + . . scaffold41344 TRF Tandem_Repeat 201 227 54 + . . scaffold41344 TRF Tandem_Repeat 289 352 128 + . . scaffold41344 WUBlastX DNA_TcMar-Tc1 3967 4989 404 + . . scaffold41344 GLEAN promoter 4867 5866 0.733461 + . ID=CGI_10004977; scaffold41344 GLEAN promoter 5527 6526 1 + . ID=CGI_10004978; scaffold41344 GLEAN mRNA 5867 6085 0.733461 + . ID=CGI_10004977; scaffold41344 WUBlastX LINE_L1 6009 6428 54 + . . scaffold41344 WUBlastX LINE_L2 6126 6428 70 + . . scaffold41344 WUBlastX LINE_L1-Tx1 6425 6538 32 + . . scaffold41344 GLEAN mRNA 6527 6937 1 + . ID=CGI_10004978; scaffold41344 WUBlastX LINE_L1 10417 10605 21 + . . scaffold41344 WUBlastX LINE_L1-Tx1 10457 11191 191 + . . scaffold41344 WUBlastX LINE_L1-Tx1 10993 12036 225 + . . scaffold41344 WUBlastX LINE_L1-Tx1 12035 12523 408 + . . scaffold41344 WUBlastX LINE_L1 12519 12665 27 + . . scaffold41344 WUBlastX LINE_I 12777 12842 22 + . . scaffold41344 WUBlastX LINE_CR1 13203 13253 26 + . . scaffold41344 TRF Tandem_Repeat 25669 26028 437 + . . scaffold41344 TRF Tandem_Repeat 26605 26640 58 + . . scaffold41344 TRF Tandem_Repeat 39085 39119 63 + . . scaffold41344 TRF Tandem_Repeat 40642 40740 65 + . . scaffold41344 TRF Tandem_Repeat 40645 40770 77 + . . scaffold41344 TRF Tandem_Repeat 42156 42246 78 + . . scaffold41344 GLEAN mRNA 43166 48670 0.954333 - . ID=CGI_10004979; scaffold41344 TRF Tandem_Repeat 45235 45308 112 + . . scaffold41344 GLEAN promoter 48671 49670 0.954333 - . ID=CGI_10004979; scaffold41344 GLEAN promoter 52161 53160 1 + . ID=CGI_10004980; scaffold41344 GLEAN mRNA 53161 73482 1 + . ID=CGI_10004980; scaffold41344 TRF Tandem_Repeat 56781 56836 112 + . . scaffold41344 TRF Tandem_Repeat 56906 56934 58 + . . scaffold41344 TRF Tandem_Repeat 59666 59699 50 + . . scaffold41344 WUBlastX LINE_RTE-X 73369 73629 52 + . . scaffold41344 WUBlastX LINE_RTE-X 73483 73758 93 + . . scaffold41344 GLEAN promoter 74373 75372 0.999623 + . ID=CGI_10004981; scaffold41344 TRF Tandem_Repeat 74429 74509 144 + . . scaffold41344 GLEAN mRNA 75373 85189 0.999623 + . ID=CGI_10004981; scaffold41344 GLEAN mRNA 99631 105671 0.729349 - . ID=CGI_10004982; scaffold41344 TRF Tandem_Repeat 103981 104341 596 + . . scaffold41344 GLEAN promoter 104897 105896 0.999612 + . ID=CGI_10004984; scaffold41344 GLEAN promoter 105672 106671 0.729349 - . ID=CGI_10004982; scaffold41344 GLEAN mRNA 105734 109885 0.999395 - . ID=CGI_10004983; scaffold41344 GLEAN mRNA 105897 115468 0.999612 + . ID=CGI_10004984; scaffold41344 GLEAN promoter 109886 110885 0.999395 - . ID=CGI_10004983; scaffold41344 TRF Tandem_Repeat 112551 112598 78 + . . scaffold41344 WUBlastX LINE_L2 112848 113084 56 - . . scaffold41344 WUBlastX LINE_L2 112896 113477 92 - . . scaffold41344 WUBlastX LINE_L2 113010 113501 111 - . . scaffold41344 WUBlastX LINE_L2 113088 113531 219 - . . scaffold41344 WUBlastX LINE_L2 113094 113459 246 - . . scaffold41344 WUBlastX LINE_L2 113169 113597 83 - . . scaffold41344 WUBlastX LINE_L2 114500 114604 22 - . . scaffold41346 TRF Tandem_Repeat 811 891 144 + . . scaffold41346 TRF Tandem_Repeat 2424 2528 61 + . . scaffold41346 GLEAN promoter 14464 15463 0.862252 + . ID=CGI_10004998; scaffold41346 GLEAN mRNA 15464 31699 0.862252 + . ID=CGI_10004998; scaffold41346 WUBlastX DNA_TcMar-Marin 17676 18080 234 - . . scaffold41346 WUBlastX DNA_TcMar-Marin 17688 18167 133 - . . scaffold41346 WUBlastX DNA_TcMar-Marin 18260 18784 320 - . . scaffold41346 WUBlastX DNA_TcMar-Marin 18266 18883 63 - . . scaffold41346 GLEAN mRNA 32052 37243 0.990251 - . ID=CGI_10004999; scaffold41346 WUBlastX RC_Helitron 33266 33763 75 - . . scaffold41346 WUBlastX DNA_Helitron 33362 33574 90 - . . scaffold41346 WUBlastX RC_Helitron 33407 33772 89 - . . scaffold41346 WUBlastX RC_Helitron 33674 33805 51 - . . scaffold41346 TRF Tandem_Repeat 36887 36922 72 + . . scaffold41346 GLEAN promoter 37244 38243 0.990251 - . ID=CGI_10004999; scaffold41346 WUBlastX DNA_P 38350 39240 106 + . . scaffold41346 WUBlastX DNA_P 38392 39114 137 + . . scaffold41346 WUBlastX DNA_P 39582 39737 22 + . . scaffold41346 WUBlastX DNA_P 39784 40449 96 + . . scaffold41346 WUBlastX DNA_IS4EU 44235 44513 71 + . . scaffold41346 WUBlastX DNA_IS4EU 44537 44815 128 + . . scaffold41346 TRF Tandem_Repeat 58926 59876 1356 + . . scaffold41346 TRF Tandem_Repeat 67883 67940 55 + . . scaffold41346 TRF Tandem_Repeat 79358 79386 51 + . . scaffold41346 GLEAN promoter 86444 87443 0.999675 + . ID=CGI_10005000; scaffold41346 GLEAN mRNA 87444 101493 0.999675 + . ID=CGI_10005000; scaffold41346 GLEAN promoter 102583 103582 1 + . ID=CGI_10005001; scaffold41346 GLEAN mRNA 103583 108603 1 + . ID=CGI_10005001; scaffold41346 GLEAN promoter 107795 108794 1 + . ID=CGI_10005002; scaffold41346 GLEAN mRNA 108795 113548 1 + . ID=CGI_10005002; scaffold41346 TRF Tandem_Repeat 112643 112678 72 + . . scaffold41356 GLEAN mRNA 5844 20035 0.990026 - . ID=CGI_10004993; scaffold41356 TRF Tandem_Repeat 9479 9523 90 + . . scaffold41356 WUBlastX LTR_Ngaro 12470 12760 110 - . . scaffold41356 WUBlastX LTR_Ngaro 12694 13281 110 - . . scaffold41356 WUBlastX LTR_Ngaro 12733 13194 113 - . . scaffold41356 GLEAN promoter 20036 21035 0.990026 - . ID=CGI_10004993; scaffold41356 TRF Tandem_Repeat 21136 21168 66 + . . scaffold41356 GLEAN mRNA 23583 56717 0.908715 - . ID=CGI_10004994; scaffold41356 TRF Tandem_Repeat 34300 34341 84 + . . scaffold41356 TRF Tandem_Repeat 41778 41822 90 + . . scaffold41356 TRF Tandem_Repeat 45552 45589 76 + . . scaffold41356 GLEAN promoter 48810 49809 0.811456 + . ID=CGI_10004995; scaffold41356 GLEAN mRNA 49810 66673 0.811456 + . ID=CGI_10004995; scaffold41356 WUBlastX LINE_RTE-X 52369 52623 41 - . . scaffold41356 WUBlastX LINE_RTE-X 52399 52611 46 - . . scaffold41356 TRF Tandem_Repeat 52676 52709 52 + . . scaffold41356 GLEAN promoter 56718 57717 0.908715 - . ID=CGI_10004994; scaffold41356 WUBlastX LINE_RTE-X 57789 57959 55 - . . scaffold41356 WUBlastX LINE_RTE-X 57804 58178 44 - . . scaffold41356 WUBlastX LINE_RTE-X 58018 58242 32 - . . scaffold41356 TRF Tandem_Repeat 59514 59541 56 + . . scaffold41356 TRF Tandem_Repeat 69623 69687 130 + . . scaffold41356 TRF Tandem_Repeat 77534 77585 97 + . . scaffold41356 TRF Tandem_Repeat 84948 85016 138 + . . scaffold41356 GLEAN promoter 89336 90335 0.997112 + . ID=CGI_10004996; scaffold41356 GLEAN mRNA 90336 103782 0.997112 + . ID=CGI_10004996; scaffold41356 TRF Tandem_Repeat 94450 94707 194 + . . scaffold41356 TRF Tandem_Repeat 94500 94709 190 + . . scaffold41356 TRF Tandem_Repeat 100050 100089 80 + . . scaffold41356 GLEAN promoter 106636 107635 0.997195 + . ID=CGI_10004997; scaffold41356 GLEAN mRNA 107636 115045 0.997195 + . ID=CGI_10004997; scaffold41356 TRF Tandem_Repeat 109657 109813 170 + . . scaffold41356 TRF Tandem_Repeat 111719 111912 205 + . . scaffold41358 TRF Tandem_Repeat 14270 14313 88 + . . scaffold41358 TRF Tandem_Repeat 18720 18808 178 + . . scaffold41358 TRF Tandem_Repeat 18720 18799 79 + . . scaffold41358 TRF Tandem_Repeat 18730 18808 83 + . . scaffold41358 WUBlastX LINE_RTE-X 23113 23463 22 + . . scaffold41358 WUBlastX LINE_RTE-X 23314 23598 25 + . . scaffold41358 GLEAN mRNA 25854 29555 1 - . ID=CGI_10004968; scaffold41358 GLEAN promoter 29556 30555 1 - . ID=CGI_10004968; scaffold41358 WUBlastX LINE_L1 30535 30600 23 - . . scaffold41358 WUBlastX LINE_RTE-X 30567 32264 903 - . . scaffold41358 GLEAN promoter 32636 33635 0.999676 + . ID=CGI_10004969; scaffold41358 TRF Tandem_Repeat 33413 33482 140 + . . scaffold41358 GLEAN mRNA 33636 41531 0.999676 + . ID=CGI_10004969; scaffold41358 TRF Tandem_Repeat 36080 36129 66 + . . scaffold41358 GLEAN mRNA 41723 44590 0.640031 - . ID=CGI_10004970; scaffold41358 GLEAN promoter 44591 45590 0.640031 - . ID=CGI_10004970; scaffold41358 GLEAN mRNA 44624 44833 1 - . ID=CGI_10004971; scaffold41358 GLEAN promoter 44834 45833 1 - . ID=CGI_10004971; scaffold41358 TRF Tandem_Repeat 46030 46150 117 + . . scaffold41358 TRF Tandem_Repeat 46034 46149 57 + . . scaffold41358 TRF Tandem_Repeat 46035 46141 65 + . . scaffold41358 GLEAN mRNA 47695 57996 0.593337 - . ID=CGI_10004972; scaffold41358 GLEAN promoter 53878 54877 0.999351 + . ID=CGI_10004973; scaffold41358 GLEAN mRNA 54878 68602 0.999351 + . ID=CGI_10004973; scaffold41358 GLEAN promoter 57997 58996 0.593337 - . ID=CGI_10004972; scaffold41358 TRF Tandem_Repeat 65580 65627 96 + . . scaffold41358 GLEAN mRNA 70766 88729 0.977174 - . ID=CGI_10004974; scaffold41358 TRF Tandem_Repeat 79183 79262 160 + . . scaffold41358 TRF Tandem_Repeat 81292 81624 531 + . . scaffold41358 TRF Tandem_Repeat 81343 81490 68 + . . scaffold41358 GLEAN promoter 88730 89729 0.977174 - . ID=CGI_10004974; scaffold41358 GLEAN promoter 90698 91697 1 + . ID=CGI_10004975; scaffold41358 GLEAN mRNA 91698 96399 1 + . ID=CGI_10004975; scaffold41358 TRF Tandem_Repeat 91950 92022 146 + . . scaffold41358 GLEAN mRNA 104455 115098 0.650923 - . ID=CGI_10004976; scaffold41358 TRF Tandem_Repeat 110356 110705 556 + . . scaffold41358 TRF Tandem_Repeat 110356 110662 200 + . . scaffold41358 TRF Tandem_Repeat 110388 110715 426 + . . scaffold41358 WUBlastX DNA_TcMar-Tc1 110732 110905 31 + . . scaffold41358 WUBlastX DNA_TcMar-Tc1 110896 111117 154 + . . scaffold41358 WUBlastX DNA_TcMar-Tc1 111122 111208 36 + . . scaffold41358 WUBlastX DNA_TcMar-Tc1 111140 111226 29 + . . scaffold41358 WUBlastX DNA_TcMar-Tc1 112017 112046 20 + . . scaffold41358 GLEAN promoter 115099 115781 0.650923 - . ID=CGI_10004976; scaffold41372 TRF Tandem_Repeat 33414 33499 73 + . . scaffold41372 TRF Tandem_Repeat 33418 33499 83 + . . scaffold41372 TRF Tandem_Repeat 33426 33468 86 + . . scaffold41372 TRF Tandem_Repeat 33466 33499 68 + . . scaffold41372 TRF Tandem_Repeat 41325 41379 110 + . . scaffold41372 WUBlastX LINE_L2 59138 59299 61 + . . scaffold41372 WUBlastX LINE_L2 59171 59329 61 + . . scaffold41372 WUBlastX LINE_L2 59195 59296 66 + . . scaffold41372 WUBlastX LINE_L2 59295 59723 38 + . . scaffold41372 WUBlastX LINE_L2 59476 60093 182 + . . scaffold41372 WUBlastX LINE_CR1 59956 60156 21 + . . scaffold41372 GLEAN promoter 66893 67892 0.261998 + . ID=CGI_10005012; scaffold41372 GLEAN mRNA 67893 79286 0.261998 + . ID=CGI_10005012; scaffold41372 WUBlastX LINE_L1-Tx1 69875 70150 20 - . . scaffold41372 WUBlastX LINE_L1-Tx1 69953 70150 72 - . . scaffold41372 WUBlastX LINE_L1-Tx1 70120 70290 28 - . . scaffold41372 WUBlastX LINE_L1-Tx1 70147 70245 36 - . . scaffold41372 WUBlastX LINE_L1-Tx1 70626 71621 350 - . . scaffold41372 WUBlastX LINE_L1-Tx1 70710 71816 100 - . . scaffold41372 WUBlastX LINE_L1 71936 72502 97 - . . scaffold41372 WUBlastX LINE_L1-Tx1 72101 72505 296 - . . scaffold41372 WUBlastX LINE_L1 72502 73113 66 - . . scaffold41372 WUBlastX LINE_L1-Tx1 72508 72807 158 - . . scaffold41372 WUBlastX LINE_L1-Tx1 73073 73813 279 - . . scaffold41372 WUBlastX LINE_L1-Tx1 73758 74123 135 - . . scaffold41372 GLEAN mRNA 75382 75567 0.481188 - . ID=CGI_10005013; scaffold41372 GLEAN promoter 75568 76567 0.481188 - . ID=CGI_10005013; scaffold41372 TRF Tandem_Repeat 80401 80456 71 + . . scaffold41372 TRF Tandem_Repeat 80405 80459 65 + . . scaffold41372 WUBlastX LINE_L1-Tx1 90341 90625 81 + . . scaffold41372 TRF Tandem_Repeat 91551 91656 56 + . . scaffold41372 TRF Tandem_Repeat 105036 105069 68 + . . scaffold41372 TRF Tandem_Repeat 110364 110417 99 + . . scaffold41372 TRF Tandem_Repeat 114555 114588 68 + . . scaffold41372 TRF Tandem_Repeat 114862 114930 129 + . . scaffold41380 TRF Tandem_Repeat 12549 12573 50 + . . scaffold41380 GLEAN mRNA 37229 64177 0.542837 - . ID=CGI_10005040; scaffold41380 GLEAN promoter 64148 65147 0.636303 + . ID=CGI_10005041; scaffold41380 GLEAN promoter 64178 65177 0.542837 - . ID=CGI_10005040; scaffold41380 TRF Tandem_Repeat 64904 64949 92 + . . scaffold41380 GLEAN mRNA 65148 69310 0.636303 + . ID=CGI_10005041; scaffold41380 TRF Tandem_Repeat 65456 65510 110 + . . scaffold41380 TRF Tandem_Repeat 65958 66206 250 + . . scaffold41380 WUBlastX LINE_RTE-BovB 66648 66800 39 - . . scaffold41380 WUBlastX LINE_RTE-BovB 66654 66746 41 - . . scaffold41380 WUBlastX LINE_RTE-BovB 66793 66834 20 - . . scaffold41380 WUBlastX LINE_RTE-BovB 66840 67109 65 - . . scaffold41380 WUBlastX LINE_RTE-BovB 66992 67252 29 - . . scaffold41380 WUBlastX LINE_RTE-BovB 67190 67609 32 - . . scaffold41380 WUBlastX LINE_RTE-BovB 67289 67477 66 - . . scaffold41380 WUBlastX LINE_RTE-BovB 67361 67609 93 - . . scaffold41380 WUBlastX LINE_RTE-BovB 67373 67651 33 - . . scaffold41380 WUBlastX LINE_RTE-BovB 68021 68089 31 - . . scaffold41380 GLEAN mRNA 71045 108079 0.937507 - . ID=CGI_10005042; scaffold41380 TRF Tandem_Repeat 82656 83019 532 + . . scaffold41380 TRF Tandem_Repeat 82984 83225 157 + . . scaffold41380 TRF Tandem_Repeat 89118 89260 254 + . . scaffold41380 TRF Tandem_Repeat 95036 95812 1108 + . . scaffold41380 TRF Tandem_Repeat 95843 95874 55 + . . scaffold41380 TRF Tandem_Repeat 101148 101750 546 + . . scaffold41380 GLEAN promoter 108080 109079 0.937507 - . ID=CGI_10005042; scaffold41380 GLEAN promoter 111276 112275 0.412771 + . ID=CGI_10005043; scaffold41380 GLEAN mRNA 112276 112449 0.412771 + . ID=CGI_10005043; scaffold41388 WUBlastX LINE_RTE-X 7794 8228 55 - . . scaffold41388 WUBlastX LINE_RTE-X 7911 8231 88 - . . scaffold41388 WUBlastX LINE_RTE-X 8261 9379 465 - . . scaffold41388 TRF Tandem_Repeat 14266 14476 350 + . . scaffold41388 TRF Tandem_Repeat 18462 18493 64 + . . scaffold41388 TRF Tandem_Repeat 29670 29700 62 + . . scaffold41388 TRF Tandem_Repeat 31889 31933 90 + . . scaffold41388 TRF Tandem_Repeat 32275 32462 169 + . . scaffold41388 TRF Tandem_Repeat 32275 32464 146 + . . scaffold41388 TRF Tandem_Repeat 33133 33218 100 + . . scaffold41388 TRF Tandem_Repeat 38197 39526 1404 + . . scaffold41388 TRF Tandem_Repeat 44085 44111 54 + . . scaffold41388 TRF Tandem_Repeat 46226 46340 158 + . . scaffold41388 TRF Tandem_Repeat 52987 53045 118 + . . scaffold41388 GLEAN mRNA 55240 60308 0.999676 - . ID=CGI_10005014; scaffold41388 WUBlastX LINE_L2 55975 56430 166 - . . scaffold41388 TRF Tandem_Repeat 59788 59820 50 + . . scaffold41388 GLEAN promoter 60309 61308 0.999676 - . ID=CGI_10005014; scaffold41388 WUBlastX LINE_CR1-L2 61047 61415 62 - . . scaffold41388 WUBlastX LINE_CR1-L2 61047 61343 81 - . . scaffold41388 WUBlastX LINE_L2 61447 61542 23 - . . scaffold41388 TRF Tandem_Repeat 98251 98656 318 + . . scaffold41388 WUBlastX LTR_Ngaro 99625 100074 154 - . . scaffold41388 WUBlastX LTR_Ngaro 99625 100158 94 - . . scaffold41388 GLEAN promoter 104241 105240 0.356245 + . ID=CGI_10005015; scaffold41388 GLEAN mRNA 105241 105846 0.356245 + . ID=CGI_10005015; scaffold41388 GLEAN mRNA 112276 116882 0.999212 - . ID=CGI_10005016; scaffold41388 TRF Tandem_Repeat 112487 112620 119 + . . scaffold41388 TRF Tandem_Repeat 113616 113732 118 + . . scaffold41388 GLEAN promoter 116883 117050 0.999212 - . ID=CGI_10005016; scaffold41390 WUBlastX LINE_L1-Tx1 157 1761 1033 - . . scaffold41390 WUBlastX LINE_L1-Tx1 1707 2708 456 - . . scaffold41390 TRF Tandem_Repeat 10777 10844 82 + . . scaffold41390 TRF Tandem_Repeat 20416 20978 367 + . . scaffold41390 TRF Tandem_Repeat 22009 22460 566 + . . scaffold41390 TRF Tandem_Repeat 23897 23958 92 + . . scaffold41390 GLEAN promoter 28728 29727 0.999999 + . ID=CGI_10004989; scaffold41390 GLEAN mRNA 29728 50412 0.999999 + . ID=CGI_10004989; scaffold41390 TRF Tandem_Repeat 29990 30027 76 + . . scaffold41390 TRF Tandem_Repeat 30806 31063 318 + . . scaffold41390 TRF Tandem_Repeat 33820 35229 2350 + . . scaffold41390 TRF Tandem_Repeat 36166 36321 167 + . . scaffold41390 TRF Tandem_Repeat 36751 36954 345 + . . scaffold41390 TRF Tandem_Repeat 36767 36881 95 + . . scaffold41390 TRF Tandem_Repeat 38459 39900 2670 + . . scaffold41390 TRF Tandem_Repeat 40724 40835 206 + . . scaffold41390 TRF Tandem_Repeat 41311 42025 1098 + . . scaffold41390 TRF Tandem_Repeat 41311 42025 1080 + . . scaffold41390 TRF Tandem_Repeat 41311 41668 617 + . . scaffold41390 TRF Tandem_Repeat 41668 42027 558 + . . scaffold41390 TRF Tandem_Repeat 42514 42739 223 + . . scaffold41390 TRF Tandem_Repeat 44218 44651 174 + . . scaffold41390 TRF Tandem_Repeat 44511 44684 160 + . . scaffold41390 TRF Tandem_Repeat 44637 45293 609 + . . scaffold41390 TRF Tandem_Repeat 44918 45862 621 + . . scaffold41390 TRF Tandem_Repeat 44984 45118 198 + . . scaffold41390 TRF Tandem_Repeat 44985 45862 666 + . . scaffold41390 TRF Tandem_Repeat 45272 45514 388 + . . scaffold41390 TRF Tandem_Repeat 45624 45862 333 + . . scaffold41390 TRF Tandem_Repeat 46145 46373 261 + . . scaffold41390 TRF Tandem_Repeat 48868 49306 583 + . . scaffold41390 TRF Tandem_Repeat 49590 50275 1103 + . . scaffold41390 TRF Tandem_Repeat 50777 51048 224 + . . scaffold41390 GLEAN mRNA 60426 61284 0.672974 - . ID=CGI_10004990; scaffold41390 WUBlastX DNA_Kolobok-Hyd 61147 61356 26 - . . scaffold41390 GLEAN promoter 61285 62284 0.672974 - . ID=CGI_10004990; scaffold41390 WUBlastX DNA_Kolobok-Hyd 62103 62480 74 - . . scaffold41390 WUBlastX DNA_Kolobok-Hyd 62581 62622 20 - . . scaffold41390 WUBlastX LTR_Gypsy-Cigr 70786 71469 199 + . . scaffold41390 WUBlastX LTR_Copia 71413 71490 38 + . . scaffold41390 WUBlastX LTR_Gypsy-Cigr 71553 72194 128 + . . scaffold41390 WUBlastX DNA_TcMar-Pogo 100328 101017 208 - . . scaffold41390 WUBlastX DNA_TcMar-Pogo 100616 101017 237 - . . scaffold41390 WUBlastX DNA_TcMar-Pogo 101013 101285 250 - . . scaffold41390 GLEAN promoter 102244 103243 0.6496 + . ID=CGI_10004991; scaffold41390 GLEAN mRNA 103244 103681 0.6496 + . ID=CGI_10004991; scaffold41390 GLEAN mRNA 105498 109889 0.999676 - . ID=CGI_10004992; scaffold41390 TRF Tandem_Repeat 107980 108022 86 + . . scaffold41390 GLEAN promoter 109890 110889 0.999676 - . ID=CGI_10004992; scaffold41390 TRF Tandem_Repeat 112775 112875 141 + . . scaffold41398 TRF Tandem_Repeat 5978 6009 55 + . . scaffold41398 TRF Tandem_Repeat 17673 17720 96 + . . scaffold41398 TRF Tandem_Repeat 18892 18962 54 + . . scaffold41398 TRF Tandem_Repeat 18893 18961 54 + . . scaffold41398 WUBlastX DNA_Harbinger 22138 22296 49 - . . scaffold41398 WUBlastX DNA_Harbinger 22361 22474 27 - . . scaffold41398 TRF Tandem_Repeat 23653 23747 118 + . . scaffold41398 WUBlastX LINE_L1-Tx1 32399 32503 32 - . . scaffold41398 WUBlastX LINE_L1-Tx1 33045 33194 33 - . . scaffold41398 TRF Tandem_Repeat 33195 33261 89 + . . scaffold41398 TRF Tandem_Repeat 35650 35698 98 + . . scaffold41398 TRF Tandem_Repeat 35886 35918 66 + . . scaffold41398 TRF Tandem_Repeat 35916 35949 68 + . . scaffold41398 TRF Tandem_Repeat 36444 36510 89 + . . scaffold41398 WUBlastX DNA_IS4EU 39362 39496 45 + . . scaffold41398 WUBlastX DNA_IS4EU 40232 40321 34 + . . scaffold41398 WUBlastX DNA_IS4EU 42083 42517 105 + . . scaffold41398 WUBlastX DNA_IS4EU 42185 42460 156 + . . scaffold41398 WUBlastX DNA_IS4EU 42185 42517 136 + . . scaffold41398 WUBlastX DNA_IS4EU 42454 42606 66 + . . scaffold41398 WUBlastX DNA_IS4EU 42588 42812 76 + . . scaffold41398 WUBlastX DNA_IS4EU 43064 43312 28 - . . scaffold41398 WUBlastX DNA_IS4EU 43347 43805 166 - . . scaffold41398 WUBlastX DNA_IS4EU 44074 44511 98 - . . scaffold41398 WUBlastX LINE_L1-Tx1 50508 50807 40 - . . scaffold41398 TRF Tandem_Repeat 56309 56389 92 + . . scaffold41398 TRF Tandem_Repeat 56322 56388 64 + . . scaffold41398 TRF Tandem_Repeat 68083 68136 108 + . . scaffold41398 TRF Tandem_Repeat 80399 80483 170 + . . scaffold41398 TRF Tandem_Repeat 81166 81204 78 + . . scaffold41398 GLEAN mRNA 91238 96582 0.62901 - . ID=CGI_10005017; scaffold41398 GLEAN promoter 96583 97582 0.62901 - . ID=CGI_10005017; scaffold41398 TRF Tandem_Repeat 101897 101944 51 + . . scaffold41398 TRF Tandem_Repeat 101902 101951 73 + . . scaffold41398 TRF Tandem_Repeat 101975 103099 1668 + . . scaffold41398 WUBlastX LINE_RTE-BovB 103758 104153 165 - . . scaffold41398 WUBlastX LINE_RTE-BovB 104421 104465 22 - . . scaffold41398 TRF Tandem_Repeat 104506 104557 70 + . . scaffold41398 TRF Tandem_Repeat 105946 106013 59 + . . scaffold41398 WUBlastX LINE_RTE-X 106637 106894 30 + . . scaffold41398 WUBlastX LINE_RTE-X 106703 107416 167 + . . scaffold41398 TRF Tandem_Repeat 108482 108515 68 + . . scaffold41398 TRF Tandem_Repeat 109892 109960 52 + . . scaffold41398 TRF Tandem_Repeat 112390 112448 100 + . . scaffold41398 TRF Tandem_Repeat 115586 115678 134 + . . scaffold41398 TRF Tandem_Repeat 116362 116425 76 + . . scaffold41400 GLEAN promoter 1 8 0.593391 + . ID=CGI_10005027; scaffold41400 GLEAN mRNA 9 1462 0.593391 + . ID=CGI_10005027; scaffold41400 TRF Tandem_Repeat 8485 8551 80 + . . scaffold41400 TRF Tandem_Repeat 9282 9320 78 + . . scaffold41400 WUBlastX LINE_CR1-L2 9928 10050 28 + . . scaffold41400 WUBlastX LINE_L2 9967 10050 30 + . . scaffold41400 WUBlastX LINE_CR1-L2 10002 10568 220 + . . scaffold41400 WUBlastX LINE_L2 10074 10553 228 + . . scaffold41400 WUBlastX LINE_L2 10571 10804 83 + . . scaffold41400 GLEAN promoter 12162 13161 0.999372 + . ID=CGI_10005028; scaffold41400 GLEAN mRNA 13162 13398 0.999372 + . ID=CGI_10005028; scaffold41400 GLEAN promoter 15714 16713 0.999993 + . ID=CGI_10005029; scaffold41400 GLEAN mRNA 16714 18182 0.999993 + . ID=CGI_10005029; scaffold41400 GLEAN promoter 21123 22122 0.55756 + . ID=CGI_10005030; scaffold41400 GLEAN mRNA 22123 22548 0.55756 + . ID=CGI_10005030; scaffold41400 TRF Tandem_Repeat 26805 26930 53 + . . scaffold41400 TRF Tandem_Repeat 33366 33491 53 + . . scaffold41400 GLEAN promoter 36317 37316 1 + . ID=CGI_10005031; scaffold41400 GLEAN mRNA 37317 38931 1 + . ID=CGI_10005031; scaffold41400 TRF Tandem_Repeat 39119 39296 115 + . . scaffold41400 TRF Tandem_Repeat 39388 39502 81 + . . scaffold41400 TRF Tandem_Repeat 39617 39888 241 + . . scaffold41400 TRF Tandem_Repeat 39617 39888 284 + . . scaffold41400 TRF Tandem_Repeat 41906 42027 75 + . . scaffold41400 TRF Tandem_Repeat 42431 42543 79 + . . scaffold41400 TRF Tandem_Repeat 43835 44095 299 + . . scaffold41400 TRF Tandem_Repeat 43835 44086 310 + . . scaffold41400 GLEAN promoter 46329 47328 0.998685 + . ID=CGI_10005032; scaffold41400 TRF Tandem_Repeat 47107 47260 164 + . . scaffold41400 GLEAN mRNA 47329 49292 0.998685 + . ID=CGI_10005032; scaffold41400 TRF Tandem_Repeat 55742 55785 88 + . . scaffold41400 GLEAN mRNA 56733 66697 0.999676 - . ID=CGI_10005033; scaffold41400 TRF Tandem_Repeat 66188 66228 57 + . . scaffold41400 GLEAN promoter 66304 67303 0.489818 + . ID=CGI_10005034; scaffold41400 GLEAN promoter 66698 67697 0.999676 - . ID=CGI_10005033; scaffold41400 GLEAN mRNA 67304 82045 0.489818 + . ID=CGI_10005034; scaffold41400 WUBlastX DNA_IS4EU 72628 73002 43 - . . scaffold41400 TRF Tandem_Repeat 77114 78123 1201 + . . scaffold41400 TRF Tandem_Repeat 78853 78916 55 + . . scaffold41400 TRF Tandem_Repeat 79094 79165 53 + . . scaffold41400 TRF Tandem_Repeat 79179 79264 54 + . . scaffold41400 TRF Tandem_Repeat 79883 79946 119 + . . scaffold41400 GLEAN mRNA 83479 83907 0.593391 - . ID=CGI_10005035; scaffold41400 GLEAN promoter 83908 84907 0.593391 - . ID=CGI_10005035; scaffold41400 GLEAN promoter 86798 87797 0.99961 + . ID=CGI_10005036; scaffold41400 GLEAN mRNA 87798 93243 0.99961 + . ID=CGI_10005036; scaffold41400 TRF Tandem_Repeat 90839 90875 74 + . . scaffold41400 TRF Tandem_Repeat 91769 91828 120 + . . scaffold41400 GLEAN mRNA 93704 115940 0.999982 - . ID=CGI_10005037; scaffold41400 TRF Tandem_Repeat 108708 108768 66 + . . scaffold41400 TRF Tandem_Repeat 114637 114692 58 + . . scaffold41400 TRF Tandem_Repeat 114640 114692 88 + . . scaffold41400 GLEAN promoter 115075 116074 1 + . ID=CGI_10005038; scaffold41400 GLEAN promoter 115941 116940 0.999982 - . ID=CGI_10005037; scaffold41400 WUBlastX DNA_IS4EU 115949 116506 234 + . . scaffold41400 GLEAN mRNA 116075 116509 1 + . ID=CGI_10005038; scaffold41400 WUBlastX DNA_IS4EU 116717 116848 60 + . . scaffold41400 WUBlastX DNA_IS4EU 116738 116911 98 + . . scaffold41400 WUBlastX DNA_Kolobok-IS4 117409 117624 65 + . . scaffold41416 GLEAN mRNA 29579 36710 0.998804 - . ID=CGI_10005050; scaffold41416 GLEAN promoter 36711 37710 0.998804 - . ID=CGI_10005050; scaffold41416 GLEAN promoter 47092 48091 0.807787 + . ID=CGI_10005051; scaffold41416 GLEAN mRNA 48092 70582 0.807787 + . ID=CGI_10005051; scaffold41416 GLEAN promoter 69643 70642 0.999996 + . ID=CGI_10005052; scaffold41416 GLEAN mRNA 70643 77233 0.999996 + . ID=CGI_10005052; scaffold41416 GLEAN mRNA 77568 77870 0.776794 - . ID=CGI_10005053; scaffold41416 GLEAN promoter 77871 78870 0.776794 - . ID=CGI_10005053; scaffold41416 GLEAN mRNA 80210 90473 0.841405 - . ID=CGI_10005054; scaffold41416 GLEAN promoter 90474 91473 0.841405 - . ID=CGI_10005054; scaffold41416 GLEAN mRNA 91558 95978 1 - . ID=CGI_10005055; scaffold41416 GLEAN promoter 95979 96978 1 - . ID=CGI_10005055; scaffold41416 GLEAN mRNA 98329 104370 0.999999 - . ID=CGI_10005056; scaffold41416 GLEAN promoter 104371 105370 0.999999 - . ID=CGI_10005056; scaffold41416 GLEAN mRNA 106429 115535 0.593391 - . ID=CGI_10005057; scaffold41416 GLEAN promoter 115536 116535 0.593391 - . ID=CGI_10005057; scaffold41436 GLEAN mRNA 44 9225 0.999949 - . ID=CGI_10005094; scaffold41436 TRF Tandem_Repeat 6286 6329 88 + . . scaffold41436 GLEAN promoter 9226 10225 0.999949 - . ID=CGI_10005094; scaffold41436 TRF Tandem_Repeat 9502 9547 92 + . . scaffold41436 TRF Tandem_Repeat 11277 11583 533 + . . scaffold41436 GLEAN promoter 12184 13183 0.904962 + . ID=CGI_10005095; scaffold41436 GLEAN mRNA 13184 19314 0.904962 + . ID=CGI_10005095; scaffold41436 TRF Tandem_Repeat 18804 18849 92 + . . scaffold41436 GLEAN mRNA 21013 30479 0.581897 - . ID=CGI_10005096; scaffold41436 TRF Tandem_Repeat 23406 23539 213 + . . scaffold41436 GLEAN promoter 30480 31479 0.581897 - . ID=CGI_10005096; scaffold41436 TRF Tandem_Repeat 34273 34322 55 + . . scaffold41436 GLEAN mRNA 36493 42724 0.836226 - . ID=CGI_10005097; scaffold41436 TRF Tandem_Repeat 39239 39298 120 + . . scaffold41436 GLEAN promoter 42725 43724 0.836226 - . ID=CGI_10005097; scaffold41436 GLEAN mRNA 43856 50564 0.999676 - . ID=CGI_10005098; scaffold41436 TRF Tandem_Repeat 46125 46155 62 + . . scaffold41436 TRF Tandem_Repeat 47190 47239 100 + . . scaffold41436 TRF Tandem_Repeat 50017 50058 66 + . . scaffold41436 TRF Tandem_Repeat 50071 50095 50 + . . scaffold41436 GLEAN promoter 50565 51564 0.999676 - . ID=CGI_10005098; scaffold41436 WUBlastX LINE_L1-Tx1 51874 52920 152 - . . scaffold41436 WUBlastX LINE_L1-Tx1 52882 53631 286 - . . scaffold41436 GLEAN promoter 59789 60788 0.998454 + . ID=CGI_10005099; scaffold41436 GLEAN mRNA 60789 64219 0.998454 + . ID=CGI_10005099; scaffold41436 GLEAN promoter 64183 65182 0.997893 + . ID=CGI_10005100; scaffold41436 GLEAN mRNA 65183 65746 0.997893 + . ID=CGI_10005100; scaffold41436 GLEAN mRNA 76474 80336 0.544852 - . ID=CGI_10005101; scaffold41436 GLEAN promoter 80337 81336 0.544852 - . ID=CGI_10005101; scaffold41436 WUBlastX DNA_TcMar-Marin 80929 81201 37 + . . scaffold41436 WUBlastX DNA_TcMar-Marin 81004 81198 52 + . . scaffold41436 TRF Tandem_Repeat 82008 82151 94 + . . scaffold41436 TRF Tandem_Repeat 82024 82167 175 + . . scaffold41436 TRF Tandem_Repeat 83739 83770 64 + . . scaffold41436 TRF Tandem_Repeat 85339 85453 169 + . . scaffold41436 WUBlastX LINE_RTE-X 85938 86204 102 + . . scaffold41436 WUBlastX LINE_RTE-X 86001 86303 74 + . . scaffold41436 WUBlastX LINE_L2 86700 87374 142 + . . scaffold41436 WUBlastX LINE_RTE-X 86880 87671 239 + . . scaffold41436 WUBlastX LINE_CR1-L2 90585 90650 20 + . . scaffold41436 WUBlastX LINE_CR1 90815 91180 163 + . . scaffold41436 WUBlastX LINE_CR1 90980 91441 159 + . . scaffold41436 WUBlastX LINE_CR1 91414 91839 214 + . . scaffold41436 WUBlastX LINE_CR1 91842 91958 28 + . . scaffold41436 WUBlastX LINE_CR1 91857 91979 27 + . . scaffold41436 WUBlastX LINE_L2 96624 97454 401 - . . scaffold41436 WUBlastX LINE_L2 97453 98991 918 - . . scaffold41436 WUBlastX LINE_L2 98922 99332 121 - . . scaffold41442 TRF Tandem_Repeat 7069 7125 114 + . . scaffold41442 WUBlastX LINE_RTE-BovB 12407 12751 42 - . . scaffold41442 WUBlastX LINE_RTE-X 12554 12751 59 - . . scaffold41442 TRF Tandem_Repeat 21119 21148 53 + . . scaffold41442 WUBlastX DNA_Crypton 23652 24143 76 - . . scaffold41442 WUBlastX DNA_Crypton 23679 24008 84 - . . scaffold41442 WUBlastX DNA_Crypton 24447 25046 83 - . . scaffold41442 TRF Tandem_Repeat 25672 26016 361 + . . scaffold41442 TRF Tandem_Repeat 25724 26018 389 + . . scaffold41442 GLEAN promoter 32185 33184 0.991246 + . ID=CGI_10005091; scaffold41442 GLEAN mRNA 33185 33709 0.991246 + . ID=CGI_10005091; scaffold41442 TRF Tandem_Repeat 38621 38752 153 + . . scaffold41442 TRF Tandem_Repeat 41784 41833 64 + . . scaffold41442 TRF Tandem_Repeat 44612 44682 133 + . . scaffold41442 GLEAN promoter 44897 45896 1 + . ID=CGI_10005092; scaffold41442 GLEAN mRNA 45897 55847 1 + . ID=CGI_10005092; scaffold41442 GLEAN mRNA 53987 54172 0.776794 - . ID=CGI_10005093; scaffold41442 GLEAN promoter 54173 55172 0.776794 - . ID=CGI_10005093; scaffold41442 TRF Tandem_Repeat 58981 59026 56 + . . scaffold41442 TRF Tandem_Repeat 81471 81732 110 + . . scaffold41442 TRF Tandem_Repeat 81502 81732 419 + . . scaffold41442 TRF Tandem_Repeat 81525 81673 120 + . . scaffold41442 TRF Tandem_Repeat 81560 81702 86 + . . scaffold41442 TRF Tandem_Repeat 81652 81731 50 + . . scaffold41448 GLEAN promoter 1 22 1 + . ID=CGI_10005058; scaffold41448 GLEAN mRNA 23 5520 1 + . ID=CGI_10005058; scaffold41448 TRF Tandem_Repeat 4371 5421 863 + . . scaffold41448 TRF Tandem_Repeat 4387 5421 1119 + . . scaffold41448 TRF Tandem_Repeat 4387 5421 1140 + . . scaffold41448 GLEAN promoter 8911 9910 1 + . ID=CGI_10005059; scaffold41448 GLEAN mRNA 9911 11719 1 + . ID=CGI_10005059; scaffold41448 TRF Tandem_Repeat 12513 12542 51 + . . scaffold41448 TRF Tandem_Repeat 18850 18888 51 + . . scaffold41448 GLEAN mRNA 23136 23471 1 - . ID=CGI_10005060; scaffold41448 GLEAN promoter 23472 24471 1 - . ID=CGI_10005060; scaffold41448 GLEAN promoter 24683 25682 0.999991 + . ID=CGI_10005061; scaffold41448 GLEAN mRNA 25683 29439 0.999991 + . ID=CGI_10005061; scaffold41448 WUBlastX LINE_RTE-X 26583 27035 97 + . . scaffold41448 TRF Tandem_Repeat 29640 29700 54 + . . scaffold41448 GLEAN mRNA 29701 43447 0.621692 - . ID=CGI_10005062; scaffold41448 TRF Tandem_Repeat 36635 36667 66 + . . scaffold41448 TRF Tandem_Repeat 37054 37285 93 + . . scaffold41448 TRF Tandem_Repeat 37605 38126 981 + . . scaffold41448 TRF Tandem_Repeat 43249 43285 74 + . . scaffold41448 GLEAN promoter 43448 44447 0.621692 - . ID=CGI_10005062; scaffold41448 TRF Tandem_Repeat 46232 46293 124 + . . scaffold41448 TRF Tandem_Repeat 52513 52560 96 + . . scaffold41448 TRF Tandem_Repeat 63333 63425 159 + . . scaffold41448 TRF Tandem_Repeat 66052 66177 170 + . . scaffold41448 TRF Tandem_Repeat 66060 66165 87 + . . scaffold41448 TRF Tandem_Repeat 66088 66174 88 + . . scaffold41448 TRF Tandem_Repeat 66091 66189 92 + . . scaffold41448 TRF Tandem_Repeat 66879 66935 107 + . . scaffold41448 TRF Tandem_Repeat 68369 68420 95 + . . scaffold41448 TRF Tandem_Repeat 68386 68453 73 + . . scaffold41448 TRF Tandem_Repeat 72736 72777 84 + . . scaffold41448 TRF Tandem_Repeat 84692 84878 275 + . . scaffold41448 TRF Tandem_Repeat 88510 88543 68 + . . scaffold41448 GLEAN promoter 90442 91441 0.531612 + . ID=CGI_10005063; scaffold41448 GLEAN mRNA 91442 100359 0.531612 + . ID=CGI_10005063; scaffold41448 TRF Tandem_Repeat 95247 96106 1357 + . . scaffold41448 GLEAN promoter 99677 100676 0.999372 + . ID=CGI_10005064; scaffold41448 GLEAN mRNA 100677 100934 0.999372 + . ID=CGI_10005064; scaffold41448 TRF Tandem_Repeat 101556 101600 83 + . . scaffold41448 GLEAN promoter 102241 103240 0.996199 + . ID=CGI_10005065; scaffold41448 GLEAN mRNA 103241 103825 0.996199 + . ID=CGI_10005065; scaffold41448 TRF Tandem_Repeat 108124 108543 668 + . . scaffold41448 TRF Tandem_Repeat 112746 112851 131 + . . scaffold41448 TRF Tandem_Repeat 114740 114918 173 + . . scaffold41448 TRF Tandem_Repeat 114765 115082 268 + . . scaffold41448 TRF Tandem_Repeat 114765 114918 254 + . . scaffold41452 TRF Tandem_Repeat 82 183 75 + . . scaffold41452 TRF Tandem_Repeat 98 199 134 + . . scaffold41452 TRF Tandem_Repeat 1731 1778 96 + . . scaffold41452 TRF Tandem_Repeat 2941 3086 172 + . . scaffold41452 TRF Tandem_Repeat 8555 8589 63 + . . scaffold41452 TRF Tandem_Repeat 18687 18836 162 + . . scaffold41452 TRF Tandem_Repeat 18905 19029 133 + . . scaffold41452 TRF Tandem_Repeat 19122 19208 104 + . . scaffold41452 GLEAN promoter 29790 30789 0.648767 + . ID=CGI_10005078; scaffold41452 GLEAN mRNA 30790 31047 0.648767 + . ID=CGI_10005078; scaffold41452 TRF Tandem_Repeat 31401 31425 50 + . . scaffold41452 TRF Tandem_Repeat 32421 32452 64 + . . scaffold41452 TRF Tandem_Repeat 38750 38836 61 + . . scaffold41452 GLEAN promoter 38805 39804 0.997104 + . ID=CGI_10005079; scaffold41452 GLEAN mRNA 39805 46191 0.997104 + . ID=CGI_10005079; scaffold41452 TRF Tandem_Repeat 40699 40754 67 + . . scaffold41452 TRF Tandem_Repeat 42875 42961 68 + . . scaffold41452 GLEAN mRNA 46207 54346 0.703235 - . ID=CGI_10005080; scaffold41452 GLEAN promoter 54347 55346 0.703235 - . ID=CGI_10005080; scaffold41452 WUBlastX LINE_L2 54398 54523 39 + . . scaffold41452 GLEAN promoter 55340 56339 0.524499 + . ID=CGI_10005081; scaffold41452 GLEAN mRNA 56340 65838 0.524499 + . ID=CGI_10005081; scaffold41452 WUBlastX LINE_L2 62494 62748 35 + . . scaffold41452 WUBlastX LINE_L2 62547 63113 69 + . . scaffold41452 WUBlastX LINE_L2 62730 63119 191 + . . scaffold41452 WUBlastX LINE_L2 62790 63128 215 + . . scaffold41452 WUBlastX LINE_L2 63140 63463 140 + . . scaffold41452 WUBlastX LINE_L2 63164 63532 41 + . . scaffold41452 WUBlastX LINE_L2 63164 63433 166 + . . scaffold41452 TRF Tandem_Repeat 70018 70075 116 + . . scaffold41452 TRF Tandem_Repeat 70018 70075 88 + . . scaffold41452 TRF Tandem_Repeat 70186 70230 65 + . . scaffold41452 TRF Tandem_Repeat 70337 70376 62 + . . scaffold41452 TRF Tandem_Repeat 74553 74640 133 + . . scaffold41452 GLEAN mRNA 76028 76807 1 - . ID=CGI_10005082; scaffold41452 GLEAN promoter 76808 77807 1 - . ID=CGI_10005082; scaffold41452 WUBlastX LINE_L1 85032 85076 23 + . . scaffold41452 WUBlastX LINE_L1 85700 86644 125 + . . scaffold41452 WUBlastX LINE_L1-Tx1 85973 86698 435 + . . scaffold41452 WUBlastX LTR_Gypsy 94608 95963 608 - . . scaffold41452 WUBlastX LTR_Gypsy 94608 95648 842 - . . scaffold41452 TRF Tandem_Repeat 97012 97109 178 + . . scaffold41452 TRF Tandem_Repeat 109288 109407 116 + . . scaffold41452 TRF Tandem_Repeat 110425 110558 94 + . . scaffold41466 TRF Tandem_Repeat 3967 5143 1525 + . . scaffold41466 TRF Tandem_Repeat 5313 5358 58 + . . scaffold41466 TRF Tandem_Repeat 18211 19640 1954 + . . scaffold41466 GLEAN promoter 20923 21922 0.891512 + . ID=CGI_10005137; scaffold41466 GLEAN mRNA 21923 33174 0.891512 + . ID=CGI_10005137; scaffold41466 WUBlastX DNA_PiggyBac 31439 31543 21 - . . scaffold41466 WUBlastX DNA_PiggyBac 31611 31703 47 - . . scaffold41466 TRF Tandem_Repeat 34117 34173 105 + . . scaffold41466 WUBlastX LTR_Gypsy 36114 36362 26 + . . scaffold41466 WUBlastX LTR_Gypsy 36379 36561 51 + . . scaffold41466 WUBlastX DNA_TcMar-Fot1 37436 37540 26 - . . scaffold41466 WUBlastX DNA_TcMar-Fot1 37519 37677 88 - . . scaffold41466 WUBlastX LINE_L2 39920 41365 414 + . . scaffold41466 WUBlastX LINE_Jockey 41358 42095 58 + . . scaffold41466 WUBlastX LINE_L2 41532 42326 417 + . . scaffold41466 TRF Tandem_Repeat 45235 45309 141 + . . scaffold41466 TRF Tandem_Repeat 45443 45521 149 + . . scaffold41466 TRF Tandem_Repeat 70744 70844 62 + . . scaffold41466 TRF Tandem_Repeat 70744 70844 62 + . . scaffold41466 TRF Tandem_Repeat 75428 75496 138 + . . scaffold41466 TRF Tandem_Repeat 77045 77090 92 + . . scaffold41466 TRF Tandem_Repeat 81718 81922 208 + . . scaffold41466 TRF Tandem_Repeat 84453 84598 172 + . . scaffold41470 TRF Tandem_Repeat 28362 28417 94 + . . scaffold41470 GLEAN promoter 31717 32716 0.987252 + . ID=CGI_10005146; scaffold41470 GLEAN mRNA 32717 39462 0.987252 + . ID=CGI_10005146; scaffold41470 TRF Tandem_Repeat 53322 53392 119 + . . scaffold41470 TRF Tandem_Repeat 54736 54842 125 + . . scaffold41470 WUBlastX DNA_Harbinger 59640 60431 115 - . . scaffold41470 TRF Tandem_Repeat 64459 64491 66 + . . scaffold41470 TRF Tandem_Repeat 68951 69901 1325 + . . scaffold41470 TRF Tandem_Repeat 76831 76889 50 + . . scaffold41470 TRF Tandem_Repeat 86311 86380 95 + . . scaffold41470 TRF Tandem_Repeat 93420 94433 1436 + . . scaffold41470 TRF Tandem_Repeat 102420 103300 1355 + . . scaffold41470 WUBlastX DNA_TcMar-Tc1 105152 105433 25 + . . scaffold41470 WUBlastX DNA_TcMar-ISRm1 105373 106023 60 + . . scaffold41470 WUBlastX DNA_TcMar-ISRm1 105481 106128 70 + . . scaffold41470 GLEAN mRNA 114859 115080 0.999967 - . ID=CGI_10005147; scaffold41470 GLEAN promoter 115081 116080 0.999967 - . ID=CGI_10005147; scaffold41470 GLEAN mRNA 115848 116054 0.412533 - . ID=CGI_10005148; scaffold41470 GLEAN promoter 116055 117054 0.412533 - . ID=CGI_10005148; scaffold41472 GLEAN promoter 1 78 0.552445 + . ID=CGI_10005138; scaffold41472 GLEAN mRNA 79 2213 0.552445 + . ID=CGI_10005138; scaffold41472 TRF Tandem_Repeat 808 890 67 + . . scaffold41472 GLEAN promoter 1271 2270 0.717991 + . ID=CGI_10005139; scaffold41472 GLEAN mRNA 2271 2552 0.717991 + . ID=CGI_10005139; scaffold41472 GLEAN mRNA 5767 21457 0.999674 - . ID=CGI_10005140; scaffold41472 WUBlastX DNA_Harbinger 14493 14918 24 + . . scaffold41472 WUBlastX DNA_Harbinger 15041 15217 54 + . . scaffold41472 TRF Tandem_Repeat 15509 15610 75 + . . scaffold41472 TRF Tandem_Repeat 15525 15618 127 + . . scaffold41472 TRF Tandem_Repeat 16091 16117 54 + . . scaffold41472 WUBlastX DNA_Harbinger 18334 18795 204 + . . scaffold41472 WUBlastX DNA_Harbinger 18367 18873 107 + . . scaffold41472 GLEAN promoter 21458 22457 0.999674 - . ID=CGI_10005140; scaffold41472 GLEAN mRNA 36236 36631 0.944161 - . ID=CGI_10005141; scaffold41472 GLEAN promoter 36632 37631 0.944161 - . ID=CGI_10005141; scaffold41472 GLEAN mRNA 41545 61172 0.421568 - . ID=CGI_10005142; scaffold41472 TRF Tandem_Repeat 43237 43347 159 + . . scaffold41472 TRF Tandem_Repeat 44015 44949 1564 + . . scaffold41472 TRF Tandem_Repeat 45944 46892 1275 + . . scaffold41472 TRF Tandem_Repeat 46897 46960 92 + . . scaffold41472 TRF Tandem_Repeat 46900 46960 86 + . . scaffold41472 GLEAN promoter 57411 58410 0.988455 + . ID=CGI_10005143; scaffold41472 GLEAN mRNA 58411 62321 0.988455 + . ID=CGI_10005143; scaffold41472 TRF Tandem_Repeat 59819 59863 65 + . . scaffold41472 GLEAN promoter 61173 62172 0.421568 - . ID=CGI_10005142; scaffold41472 GLEAN promoter 61723 62722 0.852158 + . ID=CGI_10005144; scaffold41472 GLEAN mRNA 62723 93676 0.852158 + . ID=CGI_10005144; scaffold41472 TRF Tandem_Repeat 71029 71157 108 + . . scaffold41472 TRF Tandem_Repeat 71029 71164 75 + . . scaffold41472 TRF Tandem_Repeat 71029 71158 90 + . . scaffold41472 TRF Tandem_Repeat 71719 71828 57 + . . scaffold41472 TRF Tandem_Repeat 84008 84047 80 + . . scaffold41472 TRF Tandem_Repeat 88040 88087 96 + . . scaffold41472 GLEAN promoter 94515 95514 0.843729 + . ID=CGI_10005145; scaffold41472 GLEAN mRNA 95515 108065 0.843729 + . ID=CGI_10005145; scaffold41480 TRF Tandem_Repeat 3587 3873 547 + . . scaffold41480 TRF Tandem_Repeat 4587 4701 212 + . . scaffold41480 TRF Tandem_Repeat 5531 6278 1008 + . . scaffold41480 GLEAN promoter 8841 9840 0.176345 + . ID=CGI_10005126; scaffold41480 GLEAN mRNA 9841 73363 0.176345 + . ID=CGI_10005126; scaffold41480 TRF Tandem_Repeat 9951 10011 113 + . . scaffold41480 TRF Tandem_Repeat 10086 10130 90 + . . scaffold41480 TRF Tandem_Repeat 10195 10240 74 + . . scaffold41480 TRF Tandem_Repeat 10305 10344 80 + . . scaffold41480 TRF Tandem_Repeat 10852 10926 150 + . . scaffold41480 TRF Tandem_Repeat 11126 11247 169 + . . scaffold41480 TRF Tandem_Repeat 12002 12480 742 + . . scaffold41480 TRF Tandem_Repeat 13527 13796 452 + . . scaffold41480 TRF Tandem_Repeat 15308 15422 194 + . . scaffold41480 TRF Tandem_Repeat 16464 16722 157 + . . scaffold41480 TRF Tandem_Repeat 16608 16666 52 + . . scaffold41480 TRF Tandem_Repeat 17419 17599 127 + . . scaffold41480 TRF Tandem_Repeat 18067 18730 1082 + . . scaffold41480 TRF Tandem_Repeat 19903 19953 66 + . . scaffold41480 TRF Tandem_Repeat 20835 20910 116 + . . scaffold41480 TRF Tandem_Repeat 23637 23671 52 + . . scaffold41480 TRF Tandem_Repeat 23708 23787 74 + . . scaffold41480 TRF Tandem_Repeat 23708 23791 60 + . . scaffold41480 TRF Tandem_Repeat 23713 23791 67 + . . scaffold41480 TRF Tandem_Repeat 23998 24516 399 + . . scaffold41480 TRF Tandem_Repeat 24123 24580 637 + . . scaffold41480 TRF Tandem_Repeat 24685 25173 906 + . . scaffold41480 TRF Tandem_Repeat 25245 26457 1190 + . . scaffold41480 TRF Tandem_Repeat 28771 28836 96 + . . scaffold41480 TRF Tandem_Repeat 29831 30015 244 + . . scaffold41480 TRF Tandem_Repeat 31417 31955 734 + . . scaffold41480 TRF Tandem_Repeat 34264 34324 81 + . . scaffold41480 TRF Tandem_Repeat 34372 34403 64 + . . scaffold41480 TRF Tandem_Repeat 34475 34541 134 + . . scaffold41480 TRF Tandem_Repeat 50198 50338 273 + . . scaffold41480 TRF Tandem_Repeat 50332 50474 243 + . . scaffold41480 TRF Tandem_Repeat 53404 53509 106 + . . scaffold41480 TRF Tandem_Repeat 62132 62197 123 + . . scaffold41480 TRF Tandem_Repeat 62228 63107 1670 + . . scaffold41480 TRF Tandem_Repeat 64449 64583 155 + . . scaffold41480 TRF Tandem_Repeat 65486 65510 50 + . . scaffold41480 TRF Tandem_Repeat 65853 65906 108 + . . scaffold41480 TRF Tandem_Repeat 65947 65986 80 + . . scaffold41480 TRF Tandem_Repeat 68771 68807 74 + . . scaffold41480 TRF Tandem_Repeat 69384 69525 117 + . . scaffold41480 TRF Tandem_Repeat 70298 70345 55 + . . scaffold41480 TRF Tandem_Repeat 70473 70601 77 + . . scaffold41480 TRF Tandem_Repeat 70493 70601 75 + . . scaffold41480 TRF Tandem_Repeat 70505 70614 67 + . . scaffold41480 TRF Tandem_Repeat 72787 72900 147 + . . scaffold41480 TRF Tandem_Repeat 72789 72937 121 + . . scaffold41480 TRF Tandem_Repeat 73033 73058 52 + . . scaffold41480 TRF Tandem_Repeat 74265 74407 200 + . . scaffold41480 TRF Tandem_Repeat 75202 76262 1199 + . . scaffold41480 TRF Tandem_Repeat 75202 76365 1186 + . . scaffold41480 TRF Tandem_Repeat 75202 76101 1103 + . . scaffold41480 TRF Tandem_Repeat 75385 75543 75 + . . scaffold41480 TRF Tandem_Repeat 75722 76418 648 + . . scaffold41480 TRF Tandem_Repeat 75782 76442 580 + . . scaffold41480 GLEAN promoter 79659 80658 0.992486 + . ID=CGI_10005127; scaffold41480 GLEAN mRNA 80659 94422 0.992486 + . ID=CGI_10005127; scaffold41480 TRF Tandem_Repeat 86316 86726 653 + . . scaffold41480 TRF Tandem_Repeat 89755 89822 66 + . . scaffold41480 TRF Tandem_Repeat 90829 91080 262 + . . scaffold41480 TRF Tandem_Repeat 90848 91014 149 + . . scaffold41480 TRF Tandem_Repeat 100131 100298 96 + . . scaffold41480 GLEAN promoter 100316 101315 0.999183 + . ID=CGI_10005128; scaffold41480 GLEAN mRNA 101316 108380 0.999183 + . ID=CGI_10005128; scaffold41480 TRF Tandem_Repeat 105962 108481 1902 + . . scaffold41480 TRF Tandem_Repeat 111557 112255 777 + . . scaffold41480 WUBlastX DNA_Crypton 114599 114823 66 - . . scaffold41480 WUBlastX LINE_L2 114851 115369 88 + . . scaffold41480 WUBlastX LINE_L2 115016 116095 111 + . . scaffold41480 WUBlastX LINE_L2 115160 115369 130 + . . scaffold41480 WUBlastX LINE_L2 115375 115722 215 + . . scaffold41480 WUBlastX LINE_L2 115976 116149 63 + . . scaffold415 WUBlastX DNA_Kolobok-IS4 3541 3933 50 - . . scaffold415 WUBlastX DNA_IS4EU 3603 4175 54 - . . scaffold415 WUBlastX DNA_IS4EU 3709 3963 104 - . . scaffold415 WUBlastX DNA_Kolobok-IS4 4629 4916 39 + . . scaffold415 WUBlastX DNA_Kolobok-IS4 4937 5575 266 + . . scaffold415 WUBlastX DNA_IS4EU 6572 6829 68 - . . scaffold415 WUBlastX DNA_IS4EU 7116 7337 71 - . . scaffold415 TRF Tandem_Repeat 10982 11017 72 + . . scaffold415 TRF Tandem_Repeat 11425 11466 84 + . . scaffold415 TRF Tandem_Repeat 12453 12496 79 + . . scaffold415 TRF Tandem_Repeat 14516 14649 175 + . . scaffold415 TRF Tandem_Repeat 19965 20017 52 + . . scaffold415 TRF Tandem_Repeat 19966 20021 62 + . . scaffold415 GLEAN promoter 26514 27513 1 + . ID=CGI_10004216; scaffold415 GLEAN mRNA 27514 29195 1 + . ID=CGI_10004216; scaffold415 TRF Tandem_Repeat 27788 27852 130 + . . scaffold415 TRF Tandem_Repeat 27852 27881 60 + . . scaffold415 TRF Tandem_Repeat 28783 28819 74 + . . scaffold415 GLEAN promoter 31180 32179 1 + . ID=CGI_10004217; scaffold415 GLEAN mRNA 32180 32931 1 + . ID=CGI_10004217; scaffold415 TRF Tandem_Repeat 33536 33751 176 + . . scaffold415 TRF Tandem_Repeat 34258 34607 134 + . . scaffold415 TRF Tandem_Repeat 34258 34601 230 + . . scaffold415 TRF Tandem_Repeat 34464 34601 111 + . . scaffold415 GLEAN mRNA 36227 55197 0.784737 - . ID=CGI_10004218; scaffold415 TRF Tandem_Repeat 38300 38358 59 + . . scaffold415 TRF Tandem_Repeat 38300 38364 69 + . . scaffold415 TRF Tandem_Repeat 38309 38365 66 + . . scaffold415 TRF Tandem_Repeat 38309 38358 57 + . . scaffold415 TRF Tandem_Repeat 40038 40077 80 + . . scaffold415 TRF Tandem_Repeat 41499 41529 62 + . . scaffold415 WUBlastX LINE_RTE-BovB 44905 47013 1590 + . . scaffold415 WUBlastX LINE_RTE-BovB 47028 47825 574 + . . scaffold415 TRF Tandem_Repeat 49307 49366 102 + . . scaffold415 TRF Tandem_Repeat 51117 51385 263 + . . scaffold415 TRF Tandem_Repeat 51118 51386 141 + . . scaffold415 GLEAN promoter 55198 56197 0.784737 - . ID=CGI_10004218; scaffold415 WUBlastX DNA_MuDR 58170 58727 117 + . . scaffold415 TRF Tandem_Repeat 60422 60451 60 + . . scaffold415 TRF Tandem_Repeat 60995 61048 108 + . . scaffold415 TRF Tandem_Repeat 63509 63552 79 + . . scaffold415 TRF Tandem_Repeat 68110 68186 145 + . . scaffold415 WUBlastX LTR_Gypsy 72232 73743 958 - . . scaffold415 WUBlastX LTR_Gypsy 73734 74135 62 - . . scaffold415 WUBlastX LTR_Gypsy 73896 74165 72 - . . scaffold415 WUBlastX LTR_ERV1 74082 74180 39 - . . scaffold415 WUBlastX LTR_Gypsy 74194 74493 80 - . . scaffold415 WUBlastX LTR_Gypsy 74218 74691 79 - . . scaffold415 WUBlastX LTR_Gypsy 74239 74775 40 - . . scaffold415 WUBlastX LTR_Gypsy 81211 81408 145 - . . scaffold415 WUBlastX LTR_Gypsy 81411 83018 175 - . . scaffold415 WUBlastX LTR_Gypsy 81417 82025 269 - . . scaffold41502 TRF Tandem_Repeat 1229 1283 110 + . . scaffold41502 TRF Tandem_Repeat 1859 2111 249 + . . scaffold41502 TRF Tandem_Repeat 2862 2917 112 + . . scaffold41502 GLEAN promoter 3255 4254 0.838822 + . ID=CGI_10005171; scaffold41502 GLEAN mRNA 4255 41708 0.838822 + . ID=CGI_10005171; scaffold41502 TRF Tandem_Repeat 5604 5655 104 + . . scaffold41502 TRF Tandem_Repeat 8746 8846 76 + . . scaffold41502 TRF Tandem_Repeat 8764 8853 78 + . . scaffold41502 TRF Tandem_Repeat 9306 9361 112 + . . scaffold41502 TRF Tandem_Repeat 14998 15058 52 + . . scaffold41502 TRF Tandem_Repeat 17108 17325 196 + . . scaffold41502 TRF Tandem_Repeat 17430 17555 225 + . . scaffold41502 WUBlastX DNA_MuDR 27636 28853 153 + . . scaffold41502 GLEAN mRNA 42886 53139 0.999593 - . ID=CGI_10005172; scaffold41502 TRF Tandem_Repeat 50572 50607 72 + . . scaffold41502 GLEAN promoter 53140 54139 0.999593 - . ID=CGI_10005172; scaffold41502 GLEAN mRNA 54849 65425 0.999676 - . ID=CGI_10005173; scaffold41502 GLEAN promoter 65426 66425 0.999676 - . ID=CGI_10005173; scaffold41502 TRF Tandem_Repeat 67858 67888 62 + . . scaffold41502 GLEAN promoter 68209 69208 0.426914 + . ID=CGI_10005174; scaffold41502 GLEAN mRNA 69209 85192 0.426914 + . ID=CGI_10005174; scaffold41502 TRF Tandem_Repeat 72062 72191 75 + . . scaffold41502 TRF Tandem_Repeat 72082 72197 92 + . . scaffold41502 TRF Tandem_Repeat 72115 72197 51 + . . scaffold41502 TRF Tandem_Repeat 83143 83174 55 + . . scaffold41502 WUBlastX LTR_Pao 84099 84194 21 - . . scaffold41502 TRF Tandem_Repeat 87053 87102 86 + . . scaffold41502 TRF Tandem_Repeat 94217 94525 196 + . . scaffold41502 TRF Tandem_Repeat 94221 94525 216 + . . scaffold41502 TRF Tandem_Repeat 94224 94525 270 + . . scaffold41502 TRF Tandem_Repeat 98272 98345 60 + . . scaffold41502 TRF Tandem_Repeat 98278 98348 79 + . . scaffold41502 TRF Tandem_Repeat 98518 99190 998 + . . scaffold41502 GLEAN promoter 100561 101560 0.98494 + . ID=CGI_10005175; scaffold41502 GLEAN mRNA 101561 108461 0.98494 + . ID=CGI_10005175; scaffold41502 TRF Tandem_Repeat 104398 104658 432 + . . scaffold41502 TRF Tandem_Repeat 105464 105766 516 + . . scaffold41502 TRF Tandem_Repeat 106329 106515 266 + . . scaffold41502 TRF Tandem_Repeat 106958 107060 161 + . . scaffold41502 TRF Tandem_Repeat 107523 107745 356 + . . scaffold41502 GLEAN mRNA 118746 119555 0.777767 - . ID=CGI_10005176; scaffold41502 GLEAN promoter 119556 120555 0.777767 - . ID=CGI_10005176; scaffold41522 GLEAN promoter 1 375 0.981049 + . ID=CGI_10005131; scaffold41522 GLEAN mRNA 376 10298 0.981049 + . ID=CGI_10005131; scaffold41522 GLEAN mRNA 3181 6503 0.999676 - . ID=CGI_10005132; scaffold41522 GLEAN promoter 6504 7503 0.999676 - . ID=CGI_10005132; scaffold41522 GLEAN mRNA 11479 33348 0.994208 - . ID=CGI_10005133; scaffold41522 GLEAN promoter 33349 34348 0.994208 - . ID=CGI_10005133; scaffold41522 GLEAN mRNA 39483 40730 0.828495 - . ID=CGI_10005134; scaffold41522 GLEAN promoter 40731 41730 0.828495 - . ID=CGI_10005134; scaffold41522 GLEAN mRNA 44800 58091 0.999998 - . ID=CGI_10005135; scaffold41522 GLEAN promoter 58092 59091 0.999998 - . ID=CGI_10005135; scaffold41522 GLEAN promoter 88541 89540 0.980679 + . ID=CGI_10005136; scaffold41522 GLEAN mRNA 89541 119946 0.980679 + . ID=CGI_10005136; scaffold41530 GLEAN promoter 1 82 1 + . ID=CGI_10005181; scaffold41530 GLEAN mRNA 83 839 1 + . ID=CGI_10005181; scaffold41530 TRF Tandem_Repeat 1138 1200 126 + . . scaffold41530 WUBlastX LINE_L2 7864 7956 30 + . . scaffold41530 WUBlastX LINE_CR1 8672 8761 41 + . . scaffold41530 WUBlastX LINE_L2 8687 8857 97 + . . scaffold41530 WUBlastX LINE_CR1-L2 8842 9114 93 + . . scaffold41530 TRF Tandem_Repeat 9157 9257 64 + . . scaffold41530 TRF Tandem_Repeat 9170 9233 74 + . . scaffold41530 TRF Tandem_Repeat 9498 9538 82 + . . scaffold41530 GLEAN promoter 9855 10854 0.999997 + . ID=CGI_10005182; scaffold41530 TRF Tandem_Repeat 9872 9928 71 + . . scaffold41530 WUBlastX LINE_L2 9953 10279 44 + . . scaffold41530 GLEAN mRNA 10855 19399 0.999997 + . ID=CGI_10005182; scaffold41530 GLEAN promoter 24430 25429 0.999676 + . ID=CGI_10005183; scaffold41530 GLEAN mRNA 25430 27834 0.999676 + . ID=CGI_10005183; scaffold41530 GLEAN promoter 26869 27868 0.999991 + . ID=CGI_10005184; scaffold41530 GLEAN mRNA 27869 28207 0.999991 + . ID=CGI_10005184; scaffold41530 GLEAN promoter 30865 31864 0.944556 + . ID=CGI_10005185; scaffold41530 GLEAN mRNA 31865 46058 0.944556 + . ID=CGI_10005185; scaffold41530 TRF Tandem_Repeat 33516 33547 64 + . . scaffold41530 GLEAN mRNA 48338 52110 1 - . ID=CGI_10005186; scaffold41530 TRF Tandem_Repeat 49367 50501 1348 + . . scaffold41530 TRF Tandem_Repeat 49373 50501 1098 + . . scaffold41530 TRF Tandem_Repeat 49420 50501 1661 + . . scaffold41530 GLEAN promoter 52111 53110 1 - . ID=CGI_10005186; scaffold41530 TRF Tandem_Repeat 52705 52740 72 + . . scaffold41530 TRF Tandem_Repeat 52974 53103 129 + . . scaffold41530 GLEAN mRNA 53634 54272 0.448271 - . ID=CGI_10005187; scaffold41530 GLEAN promoter 54273 55272 0.448271 - . ID=CGI_10005187; scaffold41530 TRF Tandem_Repeat 56693 56735 50 + . . scaffold41530 TRF Tandem_Repeat 65867 65921 110 + . . scaffold41530 TRF Tandem_Repeat 68723 68753 62 + . . scaffold41530 GLEAN mRNA 72238 77391 0.746896 - . ID=CGI_10005188; scaffold41530 GLEAN promoter 77392 78391 0.746896 - . ID=CGI_10005188; scaffold41530 GLEAN promoter 78147 79146 0.500878 + . ID=CGI_10005189; scaffold41530 GLEAN mRNA 79147 80508 0.500878 + . ID=CGI_10005189; scaffold41530 TRF Tandem_Repeat 89063 89162 114 + . . scaffold41530 TRF Tandem_Repeat 89063 89170 126 + . . scaffold41530 TRF Tandem_Repeat 89856 90211 280 + . . scaffold41530 TRF Tandem_Repeat 89972 90212 322 + . . scaffold41530 GLEAN promoter 90676 91675 0.983402 + . ID=CGI_10005190; scaffold41530 GLEAN mRNA 91676 96884 0.983402 + . ID=CGI_10005190; scaffold41530 GLEAN promoter 96101 97100 0.999994 + . ID=CGI_10005191; scaffold41530 GLEAN mRNA 97101 114213 0.999994 + . ID=CGI_10005191; scaffold41530 TRF Tandem_Repeat 97769 97814 65 + . . scaffold41530 TRF Tandem_Repeat 97954 98002 98 + . . scaffold41530 GLEAN mRNA 115370 115669 0.448271 - . ID=CGI_10005192; scaffold41530 GLEAN promoter 115670 116669 0.448271 - . ID=CGI_10005192; scaffold41530 TRF Tandem_Repeat 120430 120463 50 + . . scaffold41534 GLEAN promoter 1 458 0.998246 + . ID=CGI_10005249; scaffold41534 GLEAN mRNA 459 65052 0.998246 + . ID=CGI_10005249; scaffold41534 TRF Tandem_Repeat 1390 1471 137 + . . scaffold41534 TRF Tandem_Repeat 8822 9166 247 + . . scaffold41534 TRF Tandem_Repeat 11570 11790 243 + . . scaffold41534 TRF Tandem_Repeat 15895 16159 476 + . . scaffold41534 TRF Tandem_Repeat 17469 17508 62 + . . scaffold41534 TRF Tandem_Repeat 22730 22762 66 + . . scaffold41534 TRF Tandem_Repeat 28726 29068 488 + . . scaffold41534 TRF Tandem_Repeat 30040 30123 107 + . . scaffold41534 TRF Tandem_Repeat 44083 44134 68 + . . scaffold41534 TRF Tandem_Repeat 51865 51974 86 + . . scaffold41534 TRF Tandem_Repeat 55294 55340 60 + . . scaffold41534 TRF Tandem_Repeat 63989 64091 80 + . . scaffold41534 TRF Tandem_Repeat 64180 64590 267 + . . scaffold41534 TRF Tandem_Repeat 64235 64590 207 + . . scaffold41534 TRF Tandem_Repeat 64273 64590 219 + . . scaffold41534 TRF Tandem_Repeat 66268 66336 129 + . . scaffold41534 WUBlastX LTR_DIRS 67713 68534 339 + . . scaffold41534 WUBlastX LTR_DIRS 67713 69584 278 + . . scaffold41534 WUBlastX LTR_DIRS 69557 69871 118 + . . scaffold41534 TRF Tandem_Repeat 71765 72123 416 + . . scaffold41534 TRF Tandem_Repeat 72509 72677 169 + . . scaffold41534 TRF Tandem_Repeat 74087 74114 56 + . . scaffold41534 WUBlastX DNA_hAT-Tip100 94162 95865 883 + . . scaffold41534 TRF Tandem_Repeat 96143 96182 55 + . . scaffold41534 WUBlastX LTR_Gypsy 100358 100996 485 - . . scaffold41534 TRF Tandem_Repeat 102091 102205 85 + . . scaffold41534 WUBlastX LINE_L1-Tx1 102207 102584 223 + . . scaffold41534 WUBlastX LINE_L1-Tx1 102590 103177 184 + . . scaffold41534 WUBlastX LINE_L1-Tx1 103173 103283 25 + . . scaffold41534 WUBlastX LINE_L1 103200 103304 29 + . . scaffold41534 TRF Tandem_Repeat 103573 104695 1390 + . . scaffold41534 TRF Tandem_Repeat 103949 104695 950 + . . scaffold41534 WUBlastX LINE_L1-Tx1 104879 104992 30 + . . scaffold41534 WUBlastX LINE_L1 104903 104995 37 + . . scaffold41534 WUBlastX LINE_L1-Tx1 104995 105441 59 + . . scaffold41534 WUBlastX LINE_L1-Tx1 105001 105237 93 + . . scaffold41534 WUBlastX DNA_Harbinger 107515 107682 40 - . . scaffold41534 WUBlastX DNA_Harbinger 107572 107727 80 - . . scaffold41534 WUBlastX DNA_Harbinger 107685 107819 91 - . . scaffold41534 WUBlastX DNA_Harbinger 107688 108005 50 - . . scaffold41534 WUBlastX DNA_Harbinger 107925 108278 170 - . . scaffold41534 WUBlastX DNA_Harbinger 109863 110102 49 - . . scaffold41534 WUBlastX LINE_Penelope 110279 110890 58 - . . scaffold41534 WUBlastX LINE_Penelope 110437 111084 93 - . . scaffold41534 TRF Tandem_Repeat 120991 121190 330 + . . scaffold41540 WUBlastX DNA_TcMar-Tc1 1940 2944 61 - . . scaffold41540 WUBlastX DNA_TcMar-Tc1 1958 2797 146 - . . scaffold41540 GLEAN promoter 9008 10007 0.593383 + . ID=CGI_10005243; scaffold41540 GLEAN mRNA 10008 30162 0.593383 + . ID=CGI_10005243; scaffold41540 TRF Tandem_Repeat 18571 18628 82 + . . scaffold41540 TRF Tandem_Repeat 18571 18628 82 + . . scaffold41540 TRF Tandem_Repeat 18583 18628 56 + . . scaffold41540 TRF Tandem_Repeat 27222 27274 88 + . . scaffold41540 TRF Tandem_Repeat 35311 35354 61 + . . scaffold41540 TRF Tandem_Repeat 35537 36466 1285 + . . scaffold41540 TRF Tandem_Repeat 39200 39243 88 + . . scaffold41540 TRF Tandem_Repeat 39523 39593 124 + . . scaffold41540 TRF Tandem_Repeat 43789 43842 108 + . . scaffold41540 TRF Tandem_Repeat 43949 43981 66 + . . scaffold41540 GLEAN mRNA 46155 49778 0.702191 - . ID=CGI_10005244; scaffold41540 TRF Tandem_Repeat 48286 48318 57 + . . scaffold41540 TRF Tandem_Repeat 48519 48762 247 + . . scaffold41540 GLEAN promoter 49779 50778 0.702191 - . ID=CGI_10005244; scaffold41540 TRF Tandem_Repeat 50701 50742 56 + . . scaffold41540 TRF Tandem_Repeat 50701 50740 55 + . . scaffold41540 TRF Tandem_Repeat 55418 55741 201 + . . scaffold41540 GLEAN promoter 58543 59542 0.558093 + . ID=CGI_10005245; scaffold41540 GLEAN mRNA 59543 65346 0.558093 + . ID=CGI_10005245; scaffold41540 TRF Tandem_Repeat 63518 63584 89 + . . scaffold41540 GLEAN promoter 64646 65645 0.993391 + . ID=CGI_10005246; scaffold41540 GLEAN mRNA 65646 66672 0.993391 + . ID=CGI_10005246; scaffold41540 TRF Tandem_Repeat 69666 69714 98 + . . scaffold41540 TRF Tandem_Repeat 74318 74640 226 + . . scaffold41540 GLEAN promoter 84218 85217 0.999601 + . ID=CGI_10005247; scaffold41540 GLEAN mRNA 85218 93163 0.999601 + . ID=CGI_10005247; scaffold41540 TRF Tandem_Repeat 85635 85662 56 + . . scaffold41540 TRF Tandem_Repeat 85661 85688 56 + . . scaffold41540 GLEAN promoter 107954 108953 0.813741 + . ID=CGI_10005248; scaffold41540 GLEAN mRNA 108954 117117 0.813741 + . ID=CGI_10005248; scaffold41546 GLEAN promoter 230 1229 0.776044 + . ID=CGI_10005266; scaffold41546 GLEAN mRNA 1230 5934 0.776044 + . ID=CGI_10005266; scaffold41546 TRF Tandem_Repeat 9555 9604 100 + . . scaffold41546 TRF Tandem_Repeat 10997 11031 52 + . . scaffold41546 GLEAN promoter 12436 13435 1 + . ID=CGI_10005267; scaffold41546 GLEAN mRNA 13436 36095 1 + . ID=CGI_10005267; scaffold41546 TRF Tandem_Repeat 35997 36056 120 + . . scaffold41546 WUBlastX LINE_RTE-X 37004 37213 28 - . . scaffold41546 GLEAN promoter 37795 38794 0.986293 + . ID=CGI_10005268; scaffold41546 GLEAN mRNA 38795 60206 0.986293 + . ID=CGI_10005268; scaffold41546 WUBlastX LINE_L1-Tx1 47880 48590 500 - . . scaffold41546 WUBlastX LINE_L2 48903 49376 95 - . . scaffold41546 WUBlastX LINE_L2 48906 49622 83 - . . scaffold41546 TRF Tandem_Repeat 49474 49526 70 + . . scaffold41546 GLEAN mRNA 62107 64953 0.477458 - . ID=CGI_10005269; scaffold41546 GLEAN promoter 64954 65953 0.477458 - . ID=CGI_10005269; scaffold41546 TRF Tandem_Repeat 70999 71826 663 + . . scaffold41546 TRF Tandem_Repeat 81941 82000 111 + . . scaffold41546 GLEAN promoter 82120 83119 0.999382 + . ID=CGI_10005270; scaffold41546 GLEAN mRNA 83120 84253 0.999382 + . ID=CGI_10005270; scaffold41546 WUBlastX DNA_hAT-hATw 87108 87497 66 - . . scaffold41546 WUBlastX DNA_hAT-hATw 87349 88647 133 - . . scaffold41546 WUBlastX DNA_hAT-hATw 87349 88425 149 - . . scaffold41546 WUBlastX DNA_hAT-hATw 88441 89232 73 - . . scaffold41546 WUBlastX DNA_hAT-hATw 88456 89397 60 - . . scaffold41546 WUBlastX DNA_PiggyBac 91969 92343 73 - . . scaffold41546 WUBlastX DNA_PiggyBac 92029 92388 128 - . . scaffold41546 WUBlastX DNA_PiggyBac 92427 92570 62 - . . scaffold41546 WUBlastX DNA_PiggyBac 92469 92570 79 - . . scaffold41546 WUBlastX DNA_PiggyBac 92481 92597 32 - . . scaffold41546 TRF Tandem_Repeat 95469 95516 69 + . . scaffold41546 TRF Tandem_Repeat 95535 95666 90 + . . scaffold41546 TRF Tandem_Repeat 95535 95600 69 + . . scaffold41546 TRF Tandem_Repeat 96199 96232 68 + . . scaffold41546 TRF Tandem_Repeat 97846 97916 52 + . . scaffold41546 TRF Tandem_Repeat 99653 99728 152 + . . scaffold41546 TRF Tandem_Repeat 100625 100676 104 + . . scaffold41546 GLEAN promoter 100852 101851 0.999608 + . ID=CGI_10005272; scaffold41546 GLEAN mRNA 101852 116570 0.999608 + . ID=CGI_10005272; scaffold41546 TRF Tandem_Repeat 104454 104588 193 + . . scaffold41546 TRF Tandem_Repeat 113494 113537 61 + . . scaffold41546 GLEAN mRNA 115971 122965 0.999103 - . ID=CGI_10005273; scaffold41546 GLEAN promoter 122966 122965 0.999103 - . ID=CGI_10005273; scaffold41550 GLEAN promoter 2914 3913 0.999612 + . ID=CGI_10005235; scaffold41550 GLEAN mRNA 3914 12956 0.999612 + . ID=CGI_10005235; scaffold41550 TRF Tandem_Repeat 4037 4099 65 + . . scaffold41550 TRF Tandem_Repeat 4041 4111 70 + . . scaffold41550 TRF Tandem_Repeat 6413 6689 186 + . . scaffold41550 TRF Tandem_Repeat 6424 6689 229 + . . scaffold41550 TRF Tandem_Repeat 9559 9599 82 + . . scaffold41550 GLEAN mRNA 11443 22668 0.99995 - . ID=CGI_10005236; scaffold41550 TRF Tandem_Repeat 13158 13191 54 + . . scaffold41550 GLEAN promoter 22669 23668 0.99995 - . ID=CGI_10005236; scaffold41550 TRF Tandem_Repeat 22856 23098 106 + . . scaffold41550 WUBlastX LINE_RTE-X 24523 24603 26 - . . scaffold41550 WUBlastX LINE_RTE-X 24638 24727 26 - . . scaffold41550 WUBlastX LINE_RTE-X 24711 24863 24 - . . scaffold41550 TRF Tandem_Repeat 30454 30490 74 + . . scaffold41550 TRF Tandem_Repeat 32369 32423 110 + . . scaffold41550 TRF Tandem_Repeat 35180 35606 676 + . . scaffold41550 TRF Tandem_Repeat 38236 38970 1002 + . . scaffold41550 TRF Tandem_Repeat 38236 38970 991 + . . scaffold41550 TRF Tandem_Repeat 40173 40232 102 + . . scaffold41550 TRF Tandem_Repeat 41709 41829 192 + . . scaffold41550 GLEAN promoter 48127 49126 0.481188 + . ID=CGI_10005237; scaffold41550 GLEAN mRNA 49127 49375 0.481188 + . ID=CGI_10005237; scaffold41550 GLEAN mRNA 49435 50370 1 - . ID=CGI_10005238; scaffold41550 GLEAN promoter 50371 51370 1 - . ID=CGI_10005238; scaffold41550 TRF Tandem_Repeat 53959 54173 403 + . . scaffold41550 TRF Tandem_Repeat 54180 55028 976 + . . scaffold41550 TRF Tandem_Repeat 54180 55028 936 + . . scaffold41550 TRF Tandem_Repeat 57191 57239 91 + . . scaffold41550 TRF Tandem_Repeat 60133 60928 559 + . . scaffold41550 TRF Tandem_Repeat 60177 60899 895 + . . scaffold41550 TRF Tandem_Repeat 60177 60899 861 + . . scaffold41550 TRF Tandem_Repeat 60769 60907 188 + . . scaffold41550 TRF Tandem_Repeat 64280 64499 224 + . . scaffold41550 TRF Tandem_Repeat 74570 74638 129 + . . scaffold41550 GLEAN promoter 77269 78268 0.999624 + . ID=CGI_10005239; scaffold41550 GLEAN mRNA 78269 92227 0.999624 + . ID=CGI_10005239; scaffold41550 TRF Tandem_Repeat 98021 98219 158 + . . scaffold41550 TRF Tandem_Repeat 98022 98229 188 + . . scaffold41550 GLEAN mRNA 114519 119811 0.651135 - . ID=CGI_10005240; scaffold41550 GLEAN promoter 119812 120811 0.651135 - . ID=CGI_10005240; scaffold41560 TRF Tandem_Repeat 7891 7926 72 + . . scaffold41560 GLEAN promoter 8994 9993 0.999914 + . ID=CGI_10005278; scaffold41560 GLEAN mRNA 9994 10650 0.999914 + . ID=CGI_10005278; scaffold41560 TRF Tandem_Repeat 17388 17439 77 + . . scaffold41560 TRF Tandem_Repeat 18906 19069 167 + . . scaffold41560 TRF Tandem_Repeat 19278 19466 256 + . . scaffold41560 TRF Tandem_Repeat 19282 19466 230 + . . scaffold41560 TRF Tandem_Repeat 21674 21788 88 + . . scaffold41560 GLEAN promoter 48727 49726 0.835462 + . ID=CGI_10005279; scaffold41560 GLEAN mRNA 49727 51593 0.835462 + . ID=CGI_10005279; scaffold41560 GLEAN promoter 61182 62181 0.686843 + . ID=CGI_10005280; scaffold41560 GLEAN mRNA 62182 65684 0.686843 + . ID=CGI_10005280; scaffold41560 TRF Tandem_Repeat 65758 65792 70 + . . scaffold41560 GLEAN promoter 77173 78172 1 + . ID=CGI_10005281; scaffold41560 GLEAN mRNA 78173 78648 1 + . ID=CGI_10005281; scaffold41560 WUBlastX DNA_Kolobok 78385 78627 131 + . . scaffold41560 GLEAN mRNA 83554 88131 1 - . ID=CGI_10005282; scaffold41560 TRF Tandem_Repeat 84180 84432 376 + . . scaffold41560 WUBlastX LINE_CR1-L2 86027 86482 81 - . . scaffold41560 WUBlastX LINE_L2 86036 86413 112 - . . scaffold41560 WUBlastX LINE_CR1 86457 86555 37 - . . scaffold41560 GLEAN promoter 88132 89131 1 - . ID=CGI_10005282; scaffold41560 TRF Tandem_Repeat 88892 88934 86 + . . scaffold41560 TRF Tandem_Repeat 90269 90314 92 + . . scaffold41560 GLEAN mRNA 91540 92680 1 - . ID=CGI_10005283; scaffold41560 GLEAN promoter 92681 93680 1 - . ID=CGI_10005283; scaffold41560 WUBlastX LINE_CR1 94764 94988 21 + . . scaffold41560 WUBlastX LINE_CR1-L2 95832 96542 223 + . . scaffold41560 WUBlastX LINE_RTE-X 95865 96662 87 + . . scaffold41560 WUBlastX LINE_Jockey 96859 97206 36 + . . scaffold41560 WUBlastX LINE_RTE-RTE 96922 97185 59 + . . scaffold41560 WUBlastX LINE_RTE-X 96922 97518 44 + . . scaffold41560 GLEAN mRNA 99285 100679 0.999996 - . ID=CGI_10005284; scaffold41560 GLEAN promoter 100680 101679 0.999996 - . ID=CGI_10005284; scaffold41560 WUBlastX LINE_L1-Tx1 104709 105107 53 + . . scaffold41560 WUBlastX LINE_L1-Tx1 105154 105876 143 + . . scaffold41560 WUBlastX LINE_L1-Tx1 105286 105894 164 + . . scaffold41560 GLEAN promoter 105439 106438 1 + . ID=CGI_10005285; scaffold41560 GLEAN mRNA 106439 114729 1 + . ID=CGI_10005285; scaffold41560 TRF Tandem_Repeat 107209 107256 96 + . . scaffold41560 WUBlastX LINE_RTE-X 109083 109541 111 + . . scaffold41560 WUBlastX LINE_RTE-X 109161 109541 181 + . . scaffold41560 WUBlastX LINE_RTE-X 109161 109610 125 + . . scaffold41560 WUBlastX LINE_RTE-X 110121 110315 21 + . . scaffold41560 WUBlastX LINE_RTE-X 110175 110351 50 + . . scaffold41560 WUBlastX LINE_RTE-X 110217 110426 66 + . . scaffold41560 TRF Tandem_Repeat 112199 112231 57 + . . scaffold41560 GLEAN promoter 115582 116581 1 + . ID=CGI_10005286; scaffold41560 GLEAN mRNA 116582 119096 1 + . ID=CGI_10005286; scaffold41560 TRF Tandem_Repeat 120642 120703 81 + . . scaffold41560 TRF Tandem_Repeat 120873 122406 1842 + . . scaffold41568 GLEAN mRNA 7205 21508 0.839555 - . ID=CGI_10005298; scaffold41568 GLEAN promoter 21509 22508 0.839555 - . ID=CGI_10005298; scaffold41568 WUBlastX LINE_RTE-X 36428 37108 129 - . . scaffold41568 WUBlastX LINE_RTE-X 36587 37105 144 - . . scaffold41568 WUBlastX LINE_RTE-X 37660 39114 764 - . . scaffold41568 WUBlastX LINE_RTE-X 39126 40781 277 - . . scaffold41568 TRF Tandem_Repeat 52797 52865 106 + . . scaffold41568 WUBlastX LINE_L2 57643 58038 27 + . . scaffold41568 WUBlastX LINE_L1-Tx1 57760 58071 187 + . . scaffold41568 WUBlastX LINE_L1-Tx1 58076 58243 70 + . . scaffold41568 WUBlastX LINE_L1-Tx1 58179 58571 110 + . . scaffold41568 WUBlastX LINE_L1 58528 58629 26 + . . scaffold41568 WUBlastX LINE_L1-Tx1 58658 58687 22 + . . scaffold41568 WUBlastX LINE_L1-Tx1 58995 59294 33 + . . scaffold41568 WUBlastX LINE_L1-Tx1 59600 59887 32 + . . scaffold41568 TRF Tandem_Repeat 63375 63411 65 + . . scaffold41568 TRF Tandem_Repeat 65749 66065 466 + . . scaffold41568 GLEAN promoter 68989 69988 0.618186 + . ID=CGI_10005299; scaffold41568 WUBlastX DNA_IS4EU 69899 70441 85 + . . scaffold41568 GLEAN mRNA 69989 70378 0.618186 + . ID=CGI_10005299; scaffold41568 GLEAN promoter 74182 75181 0.978007 + . ID=CGI_10005300; scaffold41568 GLEAN mRNA 75182 91109 0.978007 + . ID=CGI_10005300; scaffold41568 WUBlastX DNA_Crypton 75669 76832 200 + . . scaffold41568 WUBlastX LINE_RTE-X 77737 77961 25 - . . scaffold41568 WUBlastX LINE_RTE-X 77746 77895 36 - . . scaffold41568 WUBlastX LINE_RTE-X 77939 78112 42 - . . scaffold41568 WUBlastX LINE_RTE-X 78117 78443 24 - . . scaffold41568 WUBlastX LINE_RTE-X 78120 78305 76 - . . scaffold41568 TRF Tandem_Repeat 79618 79659 50 + . . scaffold41568 WUBlastX LTR_Gypsy 84989 85408 266 + . . scaffold41568 WUBlastX LTR_Gypsy 85441 85632 98 + . . scaffold41568 WUBlastX LTR_Gypsy 85661 85885 50 + . . scaffold41568 WUBlastX LTR_Gypsy 86065 86145 25 + . . scaffold41568 WUBlastX LTR_Gypsy 86124 86213 29 + . . scaffold41568 WUBlastX LTR_Gypsy 86151 88502 1891 + . . scaffold41568 WUBlastX LTR_Gypsy 86871 89534 636 + . . scaffold41568 WUBlastX LTR_Gypsy 89055 89894 605 + . . scaffold41568 WUBlastX LTR_Gypsy 89055 90053 129 + . . scaffold41568 TRF Tandem_Repeat 92932 92974 86 + . . scaffold41568 WUBlastX LTR_Gypsy 102570 102860 95 - . . scaffold41568 TRF Tandem_Repeat 103788 103824 74 + . . scaffold41568 TRF Tandem_Repeat 115581 115629 98 + . . scaffold41568 GLEAN promoter 116262 117261 0.555784 + . ID=CGI_10005301; scaffold41568 GLEAN mRNA 117262 120300 0.555784 + . ID=CGI_10005301; scaffold41568 TRF Tandem_Repeat 118896 120429 1889 + . . scaffold41572 WUBlastX LINE_RTE-X 11619 11834 21 - . . scaffold41572 WUBlastX LINE_RTE-X 12004 12471 104 - . . scaffold41572 WUBlastX LINE_RTE-X 12489 12836 80 - . . scaffold41572 WUBlastX LINE_RTE-X 12489 12770 101 - . . scaffold41572 WUBlastX LINE_RTE-X 21455 22087 424 + . . scaffold41572 WUBlastX LINE_RTE-X 22087 23352 872 + . . scaffold41572 WUBlastX LINE_RTE-X 22759 23475 129 + . . scaffold41572 GLEAN promoter 27598 28597 0.65106 + . ID=CGI_10005293; scaffold41572 GLEAN mRNA 28598 42751 0.65106 + . ID=CGI_10005293; scaffold41572 TRF Tandem_Repeat 33315 33367 106 + . . scaffold41572 TRF Tandem_Repeat 33443 33504 97 + . . scaffold41572 TRF Tandem_Repeat 39352 39403 68 + . . scaffold41572 TRF Tandem_Repeat 39352 39418 89 + . . scaffold41572 TRF Tandem_Repeat 39373 39418 65 + . . scaffold41572 GLEAN promoter 42101 43100 1 + . ID=CGI_10005294; scaffold41572 TRF Tandem_Repeat 42913 43047 144 + . . scaffold41572 GLEAN mRNA 43101 47099 1 + . ID=CGI_10005294; scaffold41572 TRF Tandem_Repeat 45141 45194 90 + . . scaffold41572 TRF Tandem_Repeat 45637 46286 924 + . . scaffold41572 TRF Tandem_Repeat 49581 49732 86 + . . scaffold41572 TRF Tandem_Repeat 50669 50789 74 + . . scaffold41572 TRF Tandem_Repeat 60582 61892 1591 + . . scaffold41572 GLEAN mRNA 65640 78823 0.810505 - . ID=CGI_10005295; scaffold41572 WUBlastX LTR_Copia 65688 65879 26 - . . scaffold41572 TRF Tandem_Repeat 75081 75326 171 + . . scaffold41572 TRF Tandem_Repeat 75114 75325 174 + . . scaffold41572 GLEAN promoter 78333 79332 0.537079 + . ID=CGI_10005296; scaffold41572 GLEAN promoter 78824 79823 0.810505 - . ID=CGI_10005295; scaffold41572 GLEAN mRNA 79333 104852 0.537079 + . ID=CGI_10005296; scaffold41572 TRF Tandem_Repeat 85457 85670 315 + . . scaffold41572 TRF Tandem_Repeat 89956 90374 468 + . . scaffold41572 TRF Tandem_Repeat 93757 94724 1461 + . . scaffold41572 TRF Tandem_Repeat 93757 94724 1359 + . . scaffold41572 TRF Tandem_Repeat 93757 94724 1433 + . . scaffold41572 TRF Tandem_Repeat 96198 96400 334 + . . scaffold41572 TRF Tandem_Repeat 97130 98660 2433 + . . scaffold41572 TRF Tandem_Repeat 102705 103045 619 + . . scaffold41572 TRF Tandem_Repeat 103128 103417 553 + . . scaffold41572 WUBlastX LINE_RTE-X 109960 111339 537 - . . scaffold41572 GLEAN promoter 111141 112140 1 + . ID=CGI_10005297; scaffold41572 TRF Tandem_Repeat 111576 111618 86 + . . scaffold41572 GLEAN mRNA 112141 120814 1 + . ID=CGI_10005297; scaffold41572 TRF Tandem_Repeat 115583 115624 84 + . . scaffold41572 TRF Tandem_Repeat 117695 117777 159 + . . scaffold41588 TRF Tandem_Repeat 756 1678 1420 + . . scaffold41588 GLEAN promoter 2667 3666 0.999676 + . ID=CGI_10005252; scaffold41588 GLEAN mRNA 3667 21024 0.999676 + . ID=CGI_10005252; scaffold41588 TRF Tandem_Repeat 6900 7064 86 + . . scaffold41588 TRF Tandem_Repeat 6941 7066 94 + . . scaffold41588 TRF Tandem_Repeat 10782 11948 1040 + . . scaffold41588 TRF Tandem_Repeat 10784 11214 509 + . . scaffold41588 TRF Tandem_Repeat 10784 11948 1009 + . . scaffold41588 TRF Tandem_Repeat 11237 11948 614 + . . scaffold41588 TRF Tandem_Repeat 11237 11948 573 + . . scaffold41588 TRF Tandem_Repeat 14127 14493 553 + . . scaffold41588 TRF Tandem_Repeat 14267 14332 75 + . . scaffold41588 TRF Tandem_Repeat 15771 15810 50 + . . scaffold41588 TRF Tandem_Repeat 15980 17133 1359 + . . scaffold41588 GLEAN mRNA 26701 37002 0.99986 - . ID=CGI_10005253; scaffold41588 TRF Tandem_Repeat 31920 32179 269 + . . scaffold41588 GLEAN promoter 36653 37652 1 + . ID=CGI_10005254; scaffold41588 GLEAN promoter 37003 38002 0.99986 - . ID=CGI_10005253; scaffold41588 GLEAN mRNA 37653 45852 1 + . ID=CGI_10005254; scaffold41588 TRF Tandem_Repeat 43144 43510 303 + . . scaffold41588 GLEAN mRNA 48446 70491 0.998791 - . ID=CGI_10005255; scaffold41588 TRF Tandem_Repeat 52709 52900 321 + . . scaffold41588 WUBlastX LINE_RTE-X 61386 62003 73 - . . scaffold41588 TRF Tandem_Repeat 68236 68562 430 + . . scaffold41588 TRF Tandem_Repeat 68236 68539 486 + . . scaffold41588 GLEAN promoter 69999 70998 0.999676 + . ID=CGI_10005256; scaffold41588 GLEAN promoter 70492 71491 0.998791 - . ID=CGI_10005255; scaffold41588 GLEAN mRNA 70999 79844 0.999676 + . ID=CGI_10005256; scaffold41588 WUBlastX LINE_L1-Tx1 102678 102788 27 + . . scaffold41588 WUBlastX LINE_L1-Tx1 102732 102788 29 + . . scaffold41588 WUBlastX LINE_L1-Tx1 102741 102788 45 + . . scaffold41588 WUBlastX LINE_L1-Tx1 102749 103963 498 + . . scaffold41588 WUBlastX LINE_L1-Tx1 103992 104291 56 + . . scaffold41588 WUBlastX LINE_L1-Tx1 103992 104216 88 + . . scaffold41588 WUBlastX LINE_L1-Tx1 103995 104579 21 + . . scaffold41588 WUBlastX LINE_L1 104413 104496 39 + . . scaffold41588 WUBlastX LINE_L1-Tx1 104669 105289 72 + . . scaffold41588 TRF Tandem_Repeat 107879 107910 64 + . . scaffold41588 TRF Tandem_Repeat 108316 108365 65 + . . scaffold41588 TRF Tandem_Repeat 117606 117635 51 + . . scaffold41594 GLEAN promoter 3664 4663 1 + . ID=CGI_10005290; scaffold41594 GLEAN mRNA 4664 7138 1 + . ID=CGI_10005290; scaffold41594 WUBlastX LINE_RTE-X 7517 7879 43 + . . scaffold41594 WUBlastX LINE_RTE-X 7577 7852 102 + . . scaffold41594 WUBlastX LINE_RTE-X 7577 7906 79 + . . scaffold41594 GLEAN mRNA 9536 17581 0.805622 - . ID=CGI_10005291; scaffold41594 TRF Tandem_Repeat 14423 14930 554 + . . scaffold41594 TRF Tandem_Repeat 14641 15009 370 + . . scaffold41594 TRF Tandem_Repeat 16985 17023 78 + . . scaffold41594 GLEAN promoter 17582 18581 0.805622 - . ID=CGI_10005291; scaffold41594 TRF Tandem_Repeat 19976 20247 440 + . . scaffold41594 WUBlastX LINE_L2 28473 29759 190 + . . scaffold41594 WUBlastX LINE_L2 28665 29753 379 + . . scaffold41594 GLEAN promoter 45621 46620 0.559898 + . ID=CGI_10005292; scaffold41594 GLEAN mRNA 46621 47755 0.559898 + . ID=CGI_10005292; scaffold41594 WUBlastX LTR_Pao 49985 50182 141 + . . scaffold41594 WUBlastX LTR_Pao 58292 58342 25 + . . scaffold41594 WUBlastX LTR_Pao 58717 59319 263 + . . scaffold41594 WUBlastX LTR_Pao 59315 60115 232 + . . scaffold41594 WUBlastX LTR_Pao 59441 60133 272 + . . scaffold41594 WUBlastX LTR_Pao 59540 60124 523 + . . scaffold41594 WUBlastX LTR_Pao 60157 60474 176 + . . scaffold41594 TRF Tandem_Repeat 73053 74409 1981 + . . scaffold41594 WUBlastX LTR_Ngaro 77002 77307 40 + . . scaffold41594 WUBlastX LTR_Ngaro 77056 77310 60 + . . scaffold41594 WUBlastX LTR_Ngaro 77331 78539 380 + . . scaffold41594 WUBlastX LTR_Ngaro 77911 78669 189 + . . scaffold41594 WUBlastX LTR_Ngaro 78276 78746 142 + . . scaffold41594 WUBlastX LTR_DIRS 78595 78810 28 + . . scaffold41594 WUBlastX LTR_Ngaro 78869 79078 77 + . . scaffold41594 WUBlastX LTR_Ngaro 79071 79217 23 + . . scaffold41594 TRF Tandem_Repeat 86959 86995 74 + . . scaffold41594 TRF Tandem_Repeat 88059 88090 50 + . . scaffold41594 WUBlastX LTR_Gypsy 89072 89158 29 + . . scaffold41594 WUBlastX LTR_Gypsy 89152 89253 24 + . . scaffold41594 WUBlastX LTR_Gypsy 89363 89839 32 + . . scaffold41594 WUBlastX LTR_Gypsy-Cigr 89447 89842 75 + . . scaffold41594 WUBlastX LTR_Gypsy 89528 89842 95 + . . scaffold41594 TRF Tandem_Repeat 116985 117010 52 + . . scaffold41598 GLEAN mRNA 2988 4379 1 - . ID=CGI_10005302; scaffold41598 GLEAN promoter 4380 5379 1 - . ID=CGI_10005302; scaffold41598 TRF Tandem_Repeat 4846 4975 63 + . . scaffold41598 TRF Tandem_Repeat 5789 5913 80 + . . scaffold41598 GLEAN mRNA 16271 56363 0.794797 - . ID=CGI_10005303; scaffold41598 TRF Tandem_Repeat 34365 34411 94 + . . scaffold41598 GLEAN promoter 56364 57363 0.794797 - . ID=CGI_10005303; scaffold41598 GLEAN mRNA 59426 74794 0.449575 - . ID=CGI_10005304; scaffold41598 WUBlastX DNA_En-Spm 61070 61492 119 - . . scaffold41598 WUBlastX DNA_En-Spm 61492 61686 22 - . . scaffold41598 TRF Tandem_Repeat 63940 64024 161 + . . scaffold41598 WUBlastX DNA_PiggyBac 65707 65775 31 - . . scaffold41598 WUBlastX DNA_PiggyBac 65913 66404 72 - . . scaffold41598 WUBlastX DNA_PiggyBac 66009 66413 94 - . . scaffold41598 WUBlastX DNA_PiggyBac 66159 66365 123 - . . scaffold41598 WUBlastX DNA_PiggyBac 66159 66413 104 - . . scaffold41598 WUBlastX DNA_PiggyBac 66380 66574 40 - . . scaffold41598 WUBlastX DNA_PiggyBac 66446 66586 52 - . . scaffold41598 WUBlastX DNA_PiggyBac 66464 66574 53 - . . scaffold41598 WUBlastX DNA_PiggyBac 66808 66969 36 - . . scaffold41598 WUBlastX DNA_PiggyBac 66865 67101 51 - . . scaffold41598 TRF Tandem_Repeat 69858 69916 109 + . . scaffold41598 WUBlastX DNA_hAT-Tip100 73493 73783 148 - . . scaffold41598 WUBlastX DNA_PiggyBac 74305 74463 52 - . . scaffold41598 GLEAN promoter 74795 75794 0.449575 - . ID=CGI_10005304; scaffold41598 GLEAN mRNA 75381 76459 0.635613 - . ID=CGI_10005305; scaffold41598 GLEAN promoter 76460 77459 0.635613 - . ID=CGI_10005305; scaffold41598 WUBlastX DNA_PiggyBac 81327 81593 103 - . . scaffold41598 WUBlastX DNA_PiggyBac 81423 81701 74 - . . scaffold41598 WUBlastX DNA_PiggyBac 81423 81566 105 - . . scaffold41598 WUBlastX DNA_PiggyBac 81703 81930 33 - . . scaffold41598 WUBlastX DNA_PiggyBac 81951 82076 23 - . . scaffold41598 WUBlastX DNA_PiggyBac 82644 82967 107 - . . scaffold41598 WUBlastX DNA_PiggyBac 82758 83015 102 - . . scaffold41598 WUBlastX DNA_PiggyBac 82767 83120 73 - . . scaffold41598 TRF Tandem_Repeat 85060 85358 305 + . . scaffold41598 TRF Tandem_Repeat 85060 85369 343 + . . scaffold41598 WUBlastX DNA_PiggyBac 86928 87467 176 - . . scaffold41598 WUBlastX DNA_PiggyBac 87467 88477 637 - . . scaffold41598 WUBlastX LTR_Gypsy 90049 90102 23 - . . scaffold41598 WUBlastX LTR_Gypsy 90710 92677 740 - . . scaffold41598 WUBlastX LTR_Gypsy 90710 92305 1095 - . . scaffold41598 WUBlastX LTR_Gypsy 92303 94207 347 - . . scaffold41598 WUBlastX LTR_Gypsy 93311 94438 184 - . . scaffold41598 WUBlastX DNA_En-Spm 98350 99252 235 - . . scaffold41598 WUBlastX DNA_En-Spm 98536 99261 236 - . . scaffold41598 WUBlastX DNA_En-Spm 99276 99620 176 - . . scaffold41598 WUBlastX DNA_En-Spm 99524 99862 97 - . . scaffold41598 WUBlastX DNA_En-Spm 99602 99970 80 - . . scaffold41598 TRF Tandem_Repeat 101358 101433 98 + . . scaffold41598 TRF Tandem_Repeat 103017 103051 54 + . . scaffold41598 TRF Tandem_Repeat 105054 105108 65 + . . scaffold41598 TRF Tandem_Repeat 105056 105114 52 + . . scaffold41598 WUBlastX DNA_PiggyBac 111415 111747 91 - . . scaffold41598 WUBlastX LINE_Penelope 111962 112390 101 - . . scaffold41598 WUBlastX LINE_Penelope 112393 113427 114 - . . scaffold41598 WUBlastX LINE_Penelope 112720 113481 132 - . . scaffold41598 WUBlastX LINE_Penelope 112720 113652 24 - . . scaffold41598 WUBlastX LTR_Ngaro 115698 116588 287 - . . scaffold41598 WUBlastX LTR_Ngaro 115737 116750 187 - . . scaffold41598 WUBlastX LTR_Ngaro 116648 116788 68 - . . scaffold41598 TRF Tandem_Repeat 121126 121161 72 + . . scaffold416 TRF Tandem_Repeat 5047 5091 90 + . . scaffold416 GLEAN mRNA 11110 24454 0.716094 - . ID=CGI_10014735; scaffold416 TRF Tandem_Repeat 15323 15368 65 + . . scaffold416 WUBlastX LINE_Penelope 16545 16664 88 - . . scaffold416 GLEAN promoter 24455 25454 0.716094 - . ID=CGI_10014735; scaffold416 TRF Tandem_Repeat 32583 32626 52 + . . scaffold416 GLEAN mRNA 34078 46846 0.958703 - . ID=CGI_10014736; scaffold416 TRF Tandem_Repeat 46574 46652 63 + . . scaffold416 GLEAN promoter 46847 47846 0.958703 - . ID=CGI_10014736; scaffold416 WUBlastX DNA_Kolobok 50788 50937 90 - . . scaffold416 WUBlastX DNA_En-Spm 51836 52240 153 - . . scaffold416 TRF Tandem_Repeat 52242 52632 638 + . . scaffold416 TRF Tandem_Repeat 64776 64827 95 + . . scaffold416 TRF Tandem_Repeat 66342 66372 53 + . . scaffold416 TRF Tandem_Repeat 68965 68990 52 + . . scaffold416 GLEAN promoter 70464 71463 0.990768 + . ID=CGI_10014737; scaffold416 GLEAN mRNA 71464 76119 0.990768 + . ID=CGI_10014737; scaffold416 WUBlastX DNA_TcMar-Marin 95065 95163 36 - . . scaffold416 WUBlastX DNA_TcMar-Tc1 95084 95332 74 - . . scaffold416 WUBlastX DNA_TcMar-Tc1 95340 95642 91 - . . scaffold416 WUBlastX DNA_TcMar-Tc1 95409 96041 202 - . . scaffold416 TRF Tandem_Repeat 99566 99617 70 + . . scaffold416 TRF Tandem_Repeat 100277 100348 144 + . . scaffold416 TRF Tandem_Repeat 105055 105089 54 + . . scaffold416 TRF Tandem_Repeat 105262 106137 1256 + . . scaffold416 GLEAN promoter 117670 118669 1 + . ID=CGI_10014738; scaffold416 GLEAN mRNA 118670 119572 1 + . ID=CGI_10014738; scaffold416 TRF Tandem_Repeat 124975 125728 1222 + . . scaffold416 TRF Tandem_Repeat 127912 128002 146 + . . scaffold416 TRF Tandem_Repeat 127968 128057 99 + . . scaffold416 TRF Tandem_Repeat 129669 129775 142 + . . scaffold416 GLEAN promoter 131046 132045 0.660736 + . ID=CGI_10014739; scaffold416 GLEAN mRNA 132046 137634 0.660736 + . ID=CGI_10014739; scaffold416 TRF Tandem_Repeat 134377 134497 188 + . . scaffold416 TRF Tandem_Repeat 134950 134988 78 + . . scaffold416 GLEAN promoter 137143 138142 0.657495 + . ID=CGI_10014740; scaffold416 TRF Tandem_Repeat 137325 137390 107 + . . scaffold416 GLEAN mRNA 138143 163837 0.657495 + . ID=CGI_10014740; scaffold416 TRF Tandem_Repeat 139605 139727 185 + . . scaffold416 TRF Tandem_Repeat 139615 139743 103 + . . scaffold416 TRF Tandem_Repeat 150420 150460 73 + . . scaffold416 WUBlastX LINE_RTE-X 160529 160708 76 - . . scaffold416 WUBlastX LINE_RTE-X 160535 160762 33 - . . scaffold416 TRF Tandem_Repeat 167246 167289 54 + . . scaffold416 GLEAN mRNA 183315 189506 0.76923 - . ID=CGI_10014741; scaffold416 TRF Tandem_Repeat 186287 186481 149 + . . scaffold416 TRF Tandem_Repeat 186442 186798 278 + . . scaffold416 GLEAN promoter 189507 190506 0.76923 - . ID=CGI_10014741; scaffold416 TRF Tandem_Repeat 193187 193212 52 + . . scaffold416 TRF Tandem_Repeat 200348 201045 1036 + . . scaffold416 TRF Tandem_Repeat 200785 200975 78 + . . scaffold416 TRF Tandem_Repeat 201643 202419 481 + . . scaffold416 TRF Tandem_Repeat 201643 202419 546 + . . scaffold416 GLEAN promoter 206330 207329 0.983773 + . ID=CGI_10014742; scaffold416 GLEAN mRNA 207330 229032 0.983773 + . ID=CGI_10014742; scaffold416 GLEAN promoter 236921 237920 0.413925 + . ID=CGI_10014743; scaffold416 GLEAN mRNA 237921 242888 0.413925 + . ID=CGI_10014743; scaffold416 GLEAN mRNA 266202 271500 0.995004 - . ID=CGI_10014744; scaffold416 TRF Tandem_Repeat 268092 268124 66 + . . scaffold416 GLEAN promoter 271501 272500 0.995004 - . ID=CGI_10014744; scaffold416 WUBlastX LINE_Penelope 272427 272876 70 - . . scaffold416 GLEAN promoter 297589 298588 0.528485 + . ID=CGI_10014745; scaffold416 GLEAN mRNA 298589 299281 0.528485 + . ID=CGI_10014745; scaffold416 GLEAN mRNA 301346 309218 0.346552 - . ID=CGI_10014746; scaffold416 GLEAN promoter 309219 310218 0.346552 - . ID=CGI_10014746; scaffold416 GLEAN promoter 310866 311865 1 + . ID=CGI_10014747; scaffold416 GLEAN mRNA 311866 315157 1 + . ID=CGI_10014747; scaffold416 GLEAN promoter 318803 319802 0.999997 + . ID=CGI_10014748; scaffold416 GLEAN mRNA 319803 321497 0.999997 + . ID=CGI_10014748; scaffold416 WUBlastX DNA_hAT 319866 320123 63 + . . scaffold416 WUBlastX DNA_hAT 320337 320816 47 + . . scaffold416 GLEAN promoter 324125 325124 0.999449 + . ID=CGI_10014749; scaffold416 GLEAN mRNA 325125 329486 0.999449 + . ID=CGI_10014749; scaffold416 WUBlastX DNA_Harbinger 328181 328555 62 + . . scaffold416 WUBlastX DNA_Harbinger 329893 330168 201 - . . scaffold416 WUBlastX DNA_Harbinger 330153 330695 587 - . . scaffold416 WUBlastX DNA_Harbinger 330679 331080 252 - . . scaffold416 WUBlastX DNA_Harbinger 330941 331138 30 - . . scaffold416 TRF Tandem_Repeat 332312 332336 50 + . . scaffold416 TRF Tandem_Repeat 342588 343364 860 + . . scaffold416 WUBlastX DNA_TcMar-Tc1 348259 348486 36 + . . scaffold416 WUBlastX DNA_TcMar-Tc1 348307 348369 37 + . . scaffold416 WUBlastX DNA_TcMar-Tc1 348464 348898 52 + . . scaffold416 WUBlastX DNA_TcMar-Tc1 348560 348958 118 + . . scaffold416 WUBlastX DNA_TcMar-Tc1 348865 348993 34 + . . scaffold416 WUBlastX DNA_TcMar-Tc1 348984 349172 66 + . . scaffold416 WUBlastX DNA_TcMar-Tc1 348984 349211 38 + . . scaffold416 WUBlastX DNA_TcMar-Tc1 349177 349230 27 + . . scaffold416 GLEAN mRNA 349772 370578 0.436824 - . ID=CGI_10014750; scaffold416 TRF Tandem_Repeat 358314 359598 1781 + . . scaffold416 TRF Tandem_Repeat 359629 359688 84 + . . scaffold416 GLEAN promoter 370579 371578 0.436824 - . ID=CGI_10014750; scaffold416 TRF Tandem_Repeat 376279 376389 134 + . . scaffold416 TRF Tandem_Repeat 376466 376557 112 + . . scaffold416 TRF Tandem_Repeat 378081 379311 1369 + . . scaffold416 GLEAN mRNA 379949 380632 0.99998 - . ID=CGI_10014751; scaffold416 GLEAN promoter 380633 381632 0.99998 - . ID=CGI_10014751; scaffold416 TRF Tandem_Repeat 386193 386218 52 + . . scaffold416 TRF Tandem_Repeat 400955 401015 122 + . . scaffold416 GLEAN mRNA 402945 408287 0.637789 - . ID=CGI_10014752; scaffold416 TRF Tandem_Repeat 407547 407583 67 + . . scaffold416 GLEAN promoter 408288 408796 0.637789 - . ID=CGI_10014752; scaffold41604 TRF Tandem_Repeat 1703 2786 1327 + . . scaffold41604 GLEAN mRNA 44889 58242 0.477604 - . ID=CGI_10005160; scaffold41604 TRF Tandem_Repeat 54635 54669 52 + . . scaffold41604 GLEAN promoter 58243 59242 0.477604 - . ID=CGI_10005160; scaffold41604 WUBlastX LINE_L1-Tx1 61711 61824 29 - . . scaffold41604 WUBlastX LINE_L1-Tx1 61821 62546 159 - . . scaffold41604 WUBlastX LINE_L1-Tx1 62578 64749 753 - . . scaffold41604 WUBlastX LINE_L1-Tx1 62626 64464 1074 - . . scaffold41604 WUBlastX LINE_L1-Tx1 65091 65615 272 - . . scaffold41604 TRF Tandem_Repeat 85073 85146 112 + . . scaffold41604 TRF Tandem_Repeat 87306 87352 94 + . . scaffold41604 TRF Tandem_Repeat 91636 91727 139 + . . scaffold41604 GLEAN mRNA 96963 108760 0.980989 - . ID=CGI_10005161; scaffold41604 GLEAN promoter 108761 109760 0.980989 - . ID=CGI_10005161; scaffold41616 GLEAN mRNA 185 772 0.999797 - . ID=CGI_10005316; scaffold41616 GLEAN promoter 773 1772 0.999797 - . ID=CGI_10005316; scaffold41616 GLEAN promoter 1215 2214 0.570497 + . ID=CGI_10005317; scaffold41616 GLEAN mRNA 2215 28691 0.570497 + . ID=CGI_10005317; scaffold41616 GLEAN mRNA 16992 30853 0.497212 - . ID=CGI_10005318; scaffold41616 GLEAN promoter 30854 31853 0.497212 - . ID=CGI_10005318; scaffold41616 GLEAN mRNA 37376 39014 0.975441 - . ID=CGI_10005319; scaffold41616 GLEAN promoter 39015 40014 0.975441 - . ID=CGI_10005319; scaffold41616 GLEAN mRNA 52221 56084 0.968605 - . ID=CGI_10005320; scaffold41616 GLEAN promoter 56085 57084 0.968605 - . ID=CGI_10005320; scaffold41616 GLEAN mRNA 62962 63633 1 - . ID=CGI_10005321; scaffold41616 GLEAN promoter 63634 64633 1 - . ID=CGI_10005321; scaffold41616 GLEAN mRNA 63639 77455 0.860021 - . ID=CGI_10005322; scaffold41616 GLEAN promoter 77456 78455 0.860021 - . ID=CGI_10005322; scaffold41616 GLEAN promoter 85303 86302 0.991247 + . ID=CGI_10005323; scaffold41616 GLEAN mRNA 86303 87580 0.991247 + . ID=CGI_10005323; scaffold41616 GLEAN mRNA 92595 111297 0.990249 - . ID=CGI_10005324; scaffold41616 GLEAN promoter 111298 112297 0.990249 - . ID=CGI_10005324; scaffold41616 GLEAN mRNA 112973 123807 1 - . ID=CGI_10005325; scaffold41616 GLEAN promoter 123808 124357 1 - . ID=CGI_10005325; scaffold41628 WUBlastX LTR_Copia 139 267 23 - . . scaffold41628 WUBlastX LTR_Gypsy 163 1863 968 - . . scaffold41628 WUBlastX LTR_Gypsy 508 1863 1008 - . . scaffold41628 WUBlastX LTR_Copia 1066 2064 53 - . . scaffold41628 GLEAN mRNA 14198 15750 1 - . ID=CGI_10005326; scaffold41628 GLEAN promoter 15751 16750 1 - . ID=CGI_10005326; scaffold41628 TRF Tandem_Repeat 16880 16922 59 + . . scaffold41628 GLEAN mRNA 17929 30181 0.99824 - . ID=CGI_10005327; scaffold41628 GLEAN promoter 30182 31181 0.99824 - . ID=CGI_10005327; scaffold41628 GLEAN mRNA 32984 49364 0.999676 - . ID=CGI_10005328; scaffold41628 TRF Tandem_Repeat 35368 35825 655 + . . scaffold41628 TRF Tandem_Repeat 35692 35802 67 + . . scaffold41628 TRF Tandem_Repeat 39838 40315 582 + . . scaffold41628 WUBlastX DNA_TcMar-Pogo 41673 42359 262 - . . scaffold41628 GLEAN promoter 49365 50364 0.999676 - . ID=CGI_10005328; scaffold41628 TRF Tandem_Repeat 49679 49811 157 + . . scaffold41628 GLEAN promoter 50422 51421 0.987111 + . ID=CGI_10005329; scaffold41628 GLEAN mRNA 51422 56741 0.987111 + . ID=CGI_10005329; scaffold41628 TRF Tandem_Repeat 56134 56158 50 + . . scaffold41628 GLEAN promoter 60224 61223 0.961537 + . ID=CGI_10005330; scaffold41628 GLEAN mRNA 61224 67678 0.961537 + . ID=CGI_10005330; scaffold41628 GLEAN promoter 69371 70370 0.510329 + . ID=CGI_10005331; scaffold41628 TRF Tandem_Repeat 69445 69531 54 + . . scaffold41628 GLEAN mRNA 70371 89350 0.510329 + . ID=CGI_10005331; scaffold41628 TRF Tandem_Repeat 71611 71647 74 + . . scaffold41628 TRF Tandem_Repeat 76689 76805 105 + . . scaffold41628 TRF Tandem_Repeat 76689 76802 115 + . . scaffold41628 TRF Tandem_Repeat 76689 76805 106 + . . scaffold41628 TRF Tandem_Repeat 90108 90175 136 + . . scaffold41628 TRF Tandem_Repeat 93761 93807 85 + . . scaffold41628 WUBlastX LINE_L1 96015 96818 421 + . . scaffold41628 WUBlastX LINE_L1-Tx1 97076 97216 68 + . . scaffold41628 WUBlastX LINE_L1 97109 97216 68 + . . scaffold41628 WUBlastX LINE_L1-Tx1 97200 97442 33 + . . scaffold41628 WUBlastX LINE_L1-Tx1 97254 97457 58 + . . scaffold41628 WUBlastX LINE_L1-Tx1 97448 97645 78 + . . scaffold41628 WUBlastX LINE_L1-Tx1 97606 98034 63 + . . scaffold41628 WUBlastX LINE_L1-Tx1 97618 97893 145 + . . scaffold41628 WUBlastX LINE_L1 98120 98305 23 + . . scaffold41628 TRF Tandem_Repeat 104565 104607 59 + . . scaffold41628 TRF Tandem_Repeat 116630 116697 136 + . . scaffold41636 TRF Tandem_Repeat 2220 2261 50 + . . scaffold41636 TRF Tandem_Repeat 17288 20312 3547 + . . scaffold41636 TRF Tandem_Repeat 69333 69418 113 + . . scaffold41636 TRF Tandem_Repeat 69586 69695 78 + . . scaffold41636 TRF Tandem_Repeat 72039 72085 94 + . . scaffold41636 WUBlastX LINE_L1-Tx1 78923 79081 94 + . . scaffold41636 TRF Tandem_Repeat 86740 88001 1762 + . . scaffold41636 TRF Tandem_Repeat 90276 90405 91 + . . scaffold41636 WUBlastX LINE_RTE-X 94881 95213 55 - . . scaffold41636 WUBlastX LINE_RTE-X 95266 95325 24 - . . scaffold41636 WUBlastX LINE_RTE-BovB 95307 95456 21 - . . scaffold41636 WUBlastX LINE_Proto2 95316 95414 25 - . . scaffold41636 WUBlastX LINE_RTE-X 95589 95828 52 + . . scaffold41636 WUBlastX LINE_RTE-X 95601 95789 53 + . . scaffold41636 WUBlastX LINE_RTE-X 95803 95997 26 + . . scaffold41636 WUBlastX LINE_RTE-X 96124 96462 80 - . . scaffold41636 WUBlastX LINE_RTE-X 96127 96399 87 - . . scaffold41636 WUBlastX LINE_RTE-X 96175 96399 91 - . . scaffold41636 WUBlastX LINE_L2 96429 96644 31 - . . scaffold41636 WUBlastX LINE_RTE-BovB 96498 96644 51 - . . scaffold41636 WUBlastX LINE_RTE-X 96543 96731 81 - . . scaffold41636 WUBlastX LINE_RTE-X 96622 96756 41 - . . scaffold41636 TRF Tandem_Repeat 97441 97496 58 + . . scaffold41636 TRF Tandem_Repeat 97450 97497 60 + . . scaffold41636 TRF Tandem_Repeat 98638 98784 79 + . . scaffold41636 GLEAN mRNA 99168 100370 0.980718 - . ID=CGI_10005394; scaffold41636 GLEAN promoter 100371 101370 0.980718 - . ID=CGI_10005394; scaffold41636 WUBlastX LTR_Pao 111044 111268 29 + . . scaffold41636 WUBlastX LTR_Pao 111906 112652 357 + . . scaffold41636 WUBlastX LTR_Pao 113824 114513 117 + . . scaffold41636 WUBlastX LTR_Pao 114085 114513 232 + . . scaffold41636 WUBlastX LTR_Pao 114491 114889 31 + . . scaffold41636 WUBlastX LTR_Pao 114491 114754 107 + . . scaffold41636 WUBlastX LTR_Pao 114491 114808 56 + . . scaffold41636 WUBlastX DNA_Maverick 118989 119954 396 + . . scaffold41648 TRF Tandem_Repeat 2795 3676 904 + . . scaffold41648 GLEAN mRNA 6734 7225 1 - . ID=CGI_10005369; scaffold41648 GLEAN promoter 7226 8225 1 - . ID=CGI_10005369; scaffold41648 TRF Tandem_Repeat 10860 11637 1292 + . . scaffold41648 WUBlastX DNA_Academ 22981 24447 121 + . . scaffold41648 WUBlastX LTR_Gypsy 59281 59484 23 - . . scaffold41648 WUBlastX LTR_Gypsy 59503 59739 51 - . . scaffold41648 WUBlastX LTR_Gypsy 59709 60398 394 - . . scaffold41648 WUBlastX LTR_Gypsy 60328 60774 103 - . . scaffold41648 WUBlastX LTR_Gypsy-Cigr 60969 61595 227 - . . scaffold41648 WUBlastX LTR_Gypsy 60972 61718 97 - . . scaffold41648 WUBlastX DNA_Maverick 86676 86888 91 - . . scaffold41648 WUBlastX DNA_Maverick 87308 87616 20 - . . scaffold41648 WUBlastX DNA_Maverick 87317 87550 30 - . . scaffold41648 WUBlastX DNA_Maverick 87626 87760 48 - . . scaffold41648 WUBlastX DNA_Maverick 87778 88617 429 - . . scaffold41648 WUBlastX DNA_Maverick 88619 88855 108 - . . scaffold41648 WUBlastX DNA_IS4EU 91707 91898 71 + . . scaffold41648 WUBlastX DNA_Kolobok-IS4 92180 92608 97 - . . scaffold41648 WUBlastX DNA_IS4EU 92180 92407 122 - . . scaffold41648 WUBlastX DNA_IS4EU 92228 92689 94 - . . scaffold41648 WUBlastX DNA_Maverick 93654 93821 91 - . . scaffold41648 GLEAN mRNA 94493 94711 0.742608 - . ID=CGI_10005373; scaffold41648 GLEAN promoter 94712 95711 0.742608 - . ID=CGI_10005373; scaffold41648 WUBlastX LTR_Gypsy-Cigr 97541 97909 132 - . . scaffold41648 WUBlastX LTR_Gypsy 97906 98229 284 - . . scaffold41648 WUBlastX LTR_Gypsy 98232 98915 211 - . . scaffold41648 WUBlastX LTR_Gypsy-Cigr 98905 100188 945 - . . scaffold41648 WUBlastX LTR_Gypsy-Cigr 98959 100572 935 - . . scaffold41648 WUBlastX DNA_IS4EU 116605 116838 150 - . . scaffold41648 WUBlastX DNA_IS4EU 116831 117058 58 - . . scaffold41650 TRF Tandem_Repeat 915 956 57 + . . scaffold41650 GLEAN promoter 1732 2731 0.998592 + . ID=CGI_10005337; scaffold41650 GLEAN mRNA 2732 34982 0.998592 + . ID=CGI_10005337; scaffold41650 WUBlastX LINE_I 3705 3839 46 - . . scaffold41650 WUBlastX LINE_L2 3844 4833 466 - . . scaffold41650 WUBlastX LINE_CR1 3940 4992 139 - . . scaffold41650 WUBlastX LINE_CR1-L2 4875 5015 68 - . . scaffold41650 TRF Tandem_Repeat 5029 5076 96 + . . scaffold41650 WUBlastX LINE_L2 5943 6074 35 - . . scaffold41650 TRF Tandem_Repeat 10857 10916 120 + . . scaffold41650 TRF Tandem_Repeat 11762 11865 153 + . . scaffold41650 TRF Tandem_Repeat 23434 23478 83 + . . scaffold41650 TRF Tandem_Repeat 30961 30989 58 + . . scaffold41650 GLEAN mRNA 36630 86680 0.81078 - . ID=CGI_10005338; scaffold41650 TRF Tandem_Repeat 82358 82392 52 + . . scaffold41650 GLEAN promoter 86681 87680 0.81078 - . ID=CGI_10005338; scaffold41650 GLEAN mRNA 90371 113021 0.999974 - . ID=CGI_10005339; scaffold41650 TRF Tandem_Repeat 106180 106463 300 + . . scaffold41650 GLEAN promoter 112726 113725 0.997192 + . ID=CGI_10005340; scaffold41650 GLEAN promoter 113022 114021 0.999974 - . ID=CGI_10005339; scaffold41650 GLEAN mRNA 113726 123559 0.997192 + . ID=CGI_10005340; scaffold41652 TRF Tandem_Repeat 1589 1706 227 + . . scaffold41652 GLEAN mRNA 3816 27737 0.770849 - . ID=CGI_10005379; scaffold41652 WUBlastX LINE_L1-Tx1 5653 6723 119 + . . scaffold41652 TRF Tandem_Repeat 25541 25576 54 + . . scaffold41652 GLEAN promoter 27163 28162 0.842522 + . ID=CGI_10005381; scaffold41652 GLEAN promoter 27738 28737 0.770849 - . ID=CGI_10005379; scaffold41652 GLEAN mRNA 27936 28103 0.749266 - . ID=CGI_10005380; scaffold41652 GLEAN promoter 28104 29103 0.749266 - . ID=CGI_10005380; scaffold41652 GLEAN mRNA 28163 49155 0.842522 + . ID=CGI_10005381; scaffold41652 TRF Tandem_Repeat 52084 52267 176 + . . scaffold41652 GLEAN mRNA 53635 67304 0.180128 - . ID=CGI_10005382; scaffold41652 TRF Tandem_Repeat 60714 60783 140 + . . scaffold41652 GLEAN promoter 60734 61733 1 + . ID=CGI_10005383; scaffold41652 GLEAN mRNA 61734 69572 1 + . ID=CGI_10005383; scaffold41652 GLEAN promoter 67305 68304 0.180128 - . ID=CGI_10005382; scaffold41652 GLEAN mRNA 74710 85090 0.999996 - . ID=CGI_10005384; scaffold41652 TRF Tandem_Repeat 84210 84872 898 + . . scaffold41652 GLEAN promoter 85091 86090 0.999996 - . ID=CGI_10005384; scaffold41652 GLEAN mRNA 86591 94934 1 - . ID=CGI_10005385; scaffold41652 GLEAN promoter 94001 95000 1 + . ID=CGI_10005386; scaffold41652 GLEAN promoter 94935 95934 1 - . ID=CGI_10005385; scaffold41652 GLEAN mRNA 95001 110080 1 + . ID=CGI_10005386; scaffold41652 TRF Tandem_Repeat 99080 99152 139 + . . scaffold41652 TRF Tandem_Repeat 101324 102348 1063 + . . scaffold41652 GLEAN mRNA 115335 118396 0.999572 - . ID=CGI_10005387; scaffold41652 GLEAN promoter 118397 119396 0.999572 - . ID=CGI_10005387; scaffold41656 GLEAN promoter 802 1801 1 + . ID=CGI_10005388; scaffold41656 GLEAN mRNA 1802 6282 1 + . ID=CGI_10005388; scaffold41656 TRF Tandem_Repeat 2799 2859 122 + . . scaffold41656 TRF Tandem_Repeat 9742 9775 59 + . . scaffold41656 TRF Tandem_Repeat 9855 11267 2063 + . . scaffold41656 GLEAN promoter 19628 20627 0.999375 + . ID=CGI_10005389; scaffold41656 GLEAN mRNA 20628 26848 0.999375 + . ID=CGI_10005389; scaffold41656 GLEAN mRNA 29413 44194 0.978494 - . ID=CGI_10005390; scaffold41656 TRF Tandem_Repeat 31730 31778 98 + . . scaffold41656 GLEAN promoter 44195 45194 0.978494 - . ID=CGI_10005390; scaffold41656 GLEAN promoter 48927 49926 1 + . ID=CGI_10005391; scaffold41656 GLEAN mRNA 49927 51712 1 + . ID=CGI_10005391; scaffold41656 WUBlastX LINE_CR1-L2 67914 68006 59 - . . scaffold41656 WUBlastX LINE_CR1-L2 67991 68119 21 - . . scaffold41656 TRF Tandem_Repeat 83934 83970 67 + . . scaffold41656 GLEAN promoter 97808 98807 1 + . ID=CGI_10005392; scaffold41656 GLEAN mRNA 98808 100588 1 + . ID=CGI_10005392; scaffold41656 TRF Tandem_Repeat 99572 99648 90 + . . scaffold41656 TRF Tandem_Repeat 106591 106637 85 + . . scaffold41656 TRF Tandem_Repeat 114718 114756 78 + . . scaffold41656 GLEAN promoter 115696 116695 0.412686 + . ID=CGI_10005393; scaffold41656 GLEAN mRNA 116696 119323 0.412686 + . ID=CGI_10005393; scaffold41656 TRF Tandem_Repeat 118378 118431 92 + . . scaffold41660 GLEAN mRNA 215 1117 1 - . ID=CGI_10005395; scaffold41660 TRF Tandem_Repeat 984 1030 94 + . . scaffold41660 GLEAN promoter 1118 2117 1 - . ID=CGI_10005395; scaffold41660 TRF Tandem_Repeat 13479 13507 58 + . . scaffold41660 WUBlastX LINE_RTE-X 20955 21722 115 - . . scaffold41660 WUBlastX LINE_RTE-X 21084 22082 306 - . . scaffold41660 TRF Tandem_Repeat 39006 39058 106 + . . scaffold41660 TRF Tandem_Repeat 49584 49623 53 + . . scaffold41660 TRF Tandem_Repeat 53625 53666 84 + . . scaffold41660 GLEAN promoter 55277 56276 1 + . ID=CGI_10005396; scaffold41660 GLEAN mRNA 56277 57679 1 + . ID=CGI_10005396; scaffold41660 TRF Tandem_Repeat 58166 58214 71 + . . scaffold41660 GLEAN promoter 59199 60198 1 + . ID=CGI_10005397; scaffold41660 GLEAN mRNA 60199 65666 1 + . ID=CGI_10005397; scaffold41660 TRF Tandem_Repeat 69356 69384 58 + . . scaffold41660 GLEAN promoter 70057 71056 1 + . ID=CGI_10005398; scaffold41660 GLEAN mRNA 71057 71908 1 + . ID=CGI_10005398; scaffold41660 GLEAN promoter 75250 76249 0.999676 + . ID=CGI_10005399; scaffold41660 GLEAN mRNA 76250 87688 0.999676 + . ID=CGI_10005399; scaffold41660 WUBlastX LINE_RTE-X 80103 81062 161 - . . scaffold41660 WUBlastX LINE_RTE-X 80133 80936 180 - . . scaffold41660 TRF Tandem_Repeat 93597 93688 98 + . . scaffold41660 TRF Tandem_Repeat 93857 93918 81 + . . scaffold41660 TRF Tandem_Repeat 93858 93915 73 + . . scaffold41660 TRF Tandem_Repeat 96490 96580 76 + . . scaffold41660 GLEAN mRNA 97398 108151 0.645265 - . ID=CGI_10005400; scaffold41660 TRF Tandem_Repeat 100880 100923 61 + . . scaffold41660 TRF Tandem_Repeat 101106 102286 1342 + . . scaffold41660 TRF Tandem_Repeat 105264 105397 123 + . . scaffold41660 GLEAN promoter 107736 108735 0.999676 + . ID=CGI_10005401; scaffold41660 GLEAN promoter 108152 109151 0.645265 - . ID=CGI_10005400; scaffold41660 GLEAN mRNA 108736 121603 0.999676 + . ID=CGI_10005401; scaffold41660 WUBlastX LINE_L1-Tx1 109560 109907 33 - . . scaffold41660 WUBlastX LINE_L1-Tx1 109683 109904 64 - . . scaffold41660 WUBlastX LINE_L1-Tx1 109913 111604 943 - . . scaffold41660 WUBlastX LINE_L1-Tx1 113124 113543 77 - . . scaffold41660 WUBlastX LINE_L1 113199 113663 53 - . . scaffold41660 WUBlastX LINE_L1-Tx1 113202 113543 151 - . . scaffold41660 WUBlastX LINE_L1-Tx1 113735 114370 131 - . . scaffold41660 WUBlastX LINE_L1-Tx1 113831 114370 240 - . . scaffold41660 WUBlastX LINE_L1-Tx1 114369 114926 263 - . . scaffold41660 WUBlastX LINE_L1-Tx1 122884 124476 466 - . . scaffold41660 WUBlastX LINE_L1 124057 124572 27 - . . scaffold41664 GLEAN mRNA 2170 3184 0.999997 - . ID=CGI_10005413; scaffold41664 GLEAN promoter 3185 4184 0.999997 - . ID=CGI_10005413; scaffold41664 GLEAN promoter 31940 32939 0.880346 + . ID=CGI_10005414; scaffold41664 GLEAN mRNA 32940 39733 0.880346 + . ID=CGI_10005414; scaffold41664 TRF Tandem_Repeat 37939 37990 95 + . . scaffold41664 WUBlastX DNA_IS4EU 38370 38816 60 + . . scaffold41664 GLEAN mRNA 46377 46787 1 - . ID=CGI_10005415; scaffold41664 GLEAN promoter 46788 47787 1 - . ID=CGI_10005415; scaffold41664 TRF Tandem_Repeat 49812 49865 81 + . . scaffold41664 TRF Tandem_Repeat 57156 57489 473 + . . scaffold41664 WUBlastX LINE_L2 63199 63750 107 - . . scaffold41664 TRF Tandem_Repeat 66607 66638 55 + . . scaffold41664 GLEAN promoter 75394 76393 0.233482 + . ID=CGI_10005416; scaffold41664 GLEAN mRNA 76394 94658 0.233482 + . ID=CGI_10005416; scaffold41664 TRF Tandem_Repeat 78131 78341 251 + . . scaffold41664 WUBlastX LINE_Penelope 85750 85977 60 + . . scaffold41664 WUBlastX LINE_Penelope 87712 87939 60 + . . scaffold41664 GLEAN promoter 99006 100005 0.999371 + . ID=CGI_10005417; scaffold41664 GLEAN mRNA 100006 100380 0.999371 + . ID=CGI_10005417; scaffold41664 WUBlastX LTR_Pao 103670 104830 936 - . . scaffold41664 WUBlastX LTR_Pao 103736 105817 462 - . . scaffold41664 WUBlastX LTR_Pao 105206 105838 469 - . . scaffold41664 WUBlastX LTR_Pao 105239 105973 272 - . . scaffold41664 WUBlastX LTR_Pao 105951 106043 42 - . . scaffold41664 WUBlastX LTR_Pao 106051 107688 1066 - . . scaffold41664 WUBlastX LTR_Pao 107234 109150 425 - . . scaffold41664 WUBlastX LTR_Pao 108848 109207 21 - . . scaffold41664 GLEAN promoter 109934 110933 0.649599 + . ID=CGI_10005418; scaffold41664 GLEAN mRNA 110934 111347 0.649599 + . ID=CGI_10005418; scaffold41664 GLEAN promoter 121616 122615 0.999999 + . ID=CGI_10005419; scaffold41664 GLEAN mRNA 122616 126166 0.999999 + . ID=CGI_10005419; scaffold41664 TRF Tandem_Repeat 124575 124604 53 + . . scaffold41666 GLEAN promoter 1 142 0.482167 + . ID=CGI_10005374; scaffold41666 GLEAN mRNA 143 14381 0.482167 + . ID=CGI_10005374; scaffold41666 TRF Tandem_Repeat 6599 6637 51 + . . scaffold41666 TRF Tandem_Repeat 11182 11214 66 + . . scaffold41666 TRF Tandem_Repeat 11291 11347 114 + . . scaffold41666 TRF Tandem_Repeat 18347 18375 58 + . . scaffold41666 TRF Tandem_Repeat 35563 35614 104 + . . scaffold41666 GLEAN promoter 36047 37046 0.996634 + . ID=CGI_10005375; scaffold41666 GLEAN mRNA 37047 95418 0.996634 + . ID=CGI_10005375; scaffold41666 TRF Tandem_Repeat 39465 40137 569 + . . scaffold41666 TRF Tandem_Repeat 39465 39994 554 + . . scaffold41666 TRF Tandem_Repeat 39480 40075 111 + . . scaffold41666 TRF Tandem_Repeat 43313 43351 71 + . . scaffold41666 TRF Tandem_Repeat 45551 45605 110 + . . scaffold41666 TRF Tandem_Repeat 49171 49358 128 + . . scaffold41666 TRF Tandem_Repeat 49171 49355 149 + . . scaffold41666 TRF Tandem_Repeat 49297 49394 90 + . . scaffold41666 TRF Tandem_Repeat 49298 49377 97 + . . scaffold41666 TRF Tandem_Repeat 49299 49394 106 + . . scaffold41666 TRF Tandem_Repeat 49970 50001 55 + . . scaffold41666 TRF Tandem_Repeat 50166 50222 114 + . . scaffold41666 TRF Tandem_Repeat 50312 50339 56 + . . scaffold41666 TRF Tandem_Repeat 51072 51115 88 + . . scaffold41666 TRF Tandem_Repeat 51775 51822 87 + . . scaffold41666 TRF Tandem_Repeat 54804 54867 128 + . . scaffold41666 TRF Tandem_Repeat 55591 55616 52 + . . scaffold41666 TRF Tandem_Repeat 59579 59670 145 + . . scaffold41666 TRF Tandem_Repeat 63609 63637 58 + . . scaffold41666 TRF Tandem_Repeat 63753 63805 88 + . . scaffold41666 TRF Tandem_Repeat 64203 64242 80 + . . scaffold41666 TRF Tandem_Repeat 67688 67736 89 + . . scaffold41666 TRF Tandem_Repeat 68246 68302 114 + . . scaffold41666 TRF Tandem_Repeat 68840 68905 96 + . . scaffold41666 TRF Tandem_Repeat 78457 78533 147 + . . scaffold41666 TRF Tandem_Repeat 82649 82689 64 + . . scaffold41666 TRF Tandem_Repeat 89101 89147 87 + . . scaffold41666 TRF Tandem_Repeat 97087 97136 100 + . . scaffold41666 GLEAN promoter 99868 100867 0.997433 + . ID=CGI_10005376; scaffold41666 GLEAN mRNA 100868 110719 0.997433 + . ID=CGI_10005376; scaffold41666 TRF Tandem_Repeat 106139 106210 90 + . . scaffold41666 TRF Tandem_Repeat 106139 106210 73 + . . scaffold41666 GLEAN mRNA 111874 117299 0.700617 - . ID=CGI_10005377; scaffold41666 TRF Tandem_Repeat 114262 114302 82 + . . scaffold41666 WUBlastX DNA_Harbinger 115247 115750 145 + . . scaffold41666 GLEAN promoter 117300 118299 0.700617 - . ID=CGI_10005377; scaffold41666 GLEAN promoter 120225 121224 0.996368 + . ID=CGI_10005378; scaffold41666 GLEAN mRNA 121225 125620 0.996368 + . ID=CGI_10005378; scaffold41684 TRF Tandem_Repeat 3696 4076 275 + . . scaffold41684 GLEAN promoter 17630 18629 0.996062 + . ID=CGI_10005433; scaffold41684 GLEAN mRNA 18630 23455 0.996062 + . ID=CGI_10005433; scaffold41684 GLEAN mRNA 27935 49740 0.93781 - . ID=CGI_10005434; scaffold41684 TRF Tandem_Repeat 34158 34182 50 + . . scaffold41684 WUBlastX LTR_Ngaro 42120 42767 30 + . . scaffold41684 WUBlastX LTR_Ngaro 42556 43146 54 + . . scaffold41684 WUBlastX LTR_Ngaro 42784 43164 163 + . . scaffold41684 WUBlastX LTR_Ngaro 43155 43442 176 + . . scaffold41684 WUBlastX LTR_Ngaro 43158 43505 143 + . . scaffold41684 WUBlastX LTR_Ngaro 43197 43571 82 + . . scaffold41684 TRF Tandem_Repeat 47332 48124 1365 + . . scaffold41684 GLEAN promoter 49741 50740 0.93781 - . ID=CGI_10005434; scaffold41684 WUBlastX DNA_TcMar-Tc1 79308 79358 21 + . . scaffold41684 WUBlastX DNA_TcMar-Tc1 79575 79868 142 + . . scaffold41684 WUBlastX DNA_TcMar-Tc1 79578 79991 117 + . . scaffold41684 WUBlastX DNA_TcMar-Tc1 79810 80064 68 + . . scaffold41684 WUBlastX DNA_TcMar-Tc1 80060 80257 63 + . . scaffold41684 WUBlastX DNA_TcMar-Tc1 80066 80224 93 + . . scaffold41684 WUBlastX LINE_L2 84033 84200 63 - . . scaffold41684 WUBlastX LINE_L2 84066 84200 69 - . . scaffold41684 GLEAN mRNA 84256 88608 0.999514 - . ID=CGI_10005435; scaffold41684 GLEAN promoter 88609 89608 0.999514 - . ID=CGI_10005435; scaffold41684 TRF Tandem_Repeat 88883 88916 68 + . . scaffold41684 TRF Tandem_Repeat 89318 89360 59 + . . scaffold41684 TRF Tandem_Repeat 90670 90720 93 + . . scaffold41684 TRF Tandem_Repeat 90879 90924 76 + . . scaffold41684 TRF Tandem_Repeat 98415 98478 105 + . . scaffold41684 TRF Tandem_Repeat 99736 99769 68 + . . scaffold41684 TRF Tandem_Repeat 103965 104148 224 + . . scaffold41684 TRF Tandem_Repeat 103965 104148 251 + . . scaffold41684 TRF Tandem_Repeat 116537 116579 86 + . . scaffold41684 TRF Tandem_Repeat 117783 117834 104 + . . scaffold41684 TRF Tandem_Repeat 119624 119671 96 + . . scaffold41684 TRF Tandem_Repeat 119687 119735 98 + . . scaffold41684 TRF Tandem_Repeat 120594 120657 92 + . . scaffold41684 TRF Tandem_Repeat 121705 121735 62 + . . scaffold41684 TRF Tandem_Repeat 123283 123359 63 + . . scaffold41684 TRF Tandem_Repeat 123875 123907 50 + . . scaffold41684 WUBlastX LINE_L1-Tx1 124304 124624 57 - . . scaffold41684 WUBlastX LINE_L1-Tx1 124340 124690 53 - . . scaffold41684 WUBlastX LINE_L1-Tx1 125254 125403 29 - . . scaffold41684 WUBlastX LINE_L1-Tx1 125299 125391 47 - . . scaffold417 WUBlastX LTR_Gypsy 27247 27498 60 - . . scaffold417 WUBlastX LTR_Gypsy 28346 28480 24 - . . scaffold417 WUBlastX LTR_Gypsy 28506 28676 30 - . . scaffold417 WUBlastX LTR_Gypsy 28669 28731 31 - . . scaffold417 TRF Tandem_Repeat 29480 29525 92 + . . scaffold417 WUBlastX LINE_R1 30131 30304 40 - . . scaffold417 WUBlastX LINE_CR1 30241 30534 60 - . . scaffold417 WUBlastX LINE_RTE-X 30534 30905 100 - . . scaffold417 WUBlastX LINE_L1-Tx1 30737 31432 105 - . . scaffold417 WUBlastX LINE_L2 30902 31522 136 - . . scaffold417 WUBlastX LINE_Proto2 31500 31868 24 - . . scaffold417 WUBlastX LINE_Proto2 31521 31739 64 - . . scaffold417 WUBlastX LINE_Jockey 31877 31933 26 - . . scaffold417 WUBlastX LINE_Jockey 31886 31933 30 - . . scaffold417 WUBlastX LINE_I 31886 31954 29 - . . scaffold417 WUBlastX LTR_Gypsy 32093 32179 22 - . . scaffold417 WUBlastX LTR_Gypsy 32214 32366 55 - . . scaffold417 WUBlastX LTR_Gypsy 32381 32539 77 - . . scaffold417 WUBlastX LTR_Gypsy 33844 34818 169 + . . scaffold417 WUBlastX LTR_Gypsy 34006 34935 250 + . . scaffold417 WUBlastX LTR_Gypsy 34925 35527 118 + . . scaffold417 WUBlastX LTR_Gypsy 35060 36562 954 + . . scaffold417 WUBlastX LTR_Gypsy 35216 36994 700 + . . scaffold417 WUBlastX LTR_Gypsy 36842 37027 92 + . . scaffold417 WUBlastX LTR_Gypsy 36845 37078 63 + . . scaffold417 WUBlastX LTR_Gypsy 37256 37315 30 + . . scaffold417 WUBlastX LTR_Gypsy 37522 37560 24 + . . scaffold417 WUBlastX LTR_Gypsy 37838 37876 20 + . . scaffold417 TRF Tandem_Repeat 66948 66987 64 + . . scaffold41700 WUBlastX DNA_TcMar-Tc1 664 1374 60 + . . scaffold41700 WUBlastX DNA_TcMar-Tc1 685 1287 285 + . . scaffold41700 WUBlastX DNA_En-Spm 3361 3723 129 - . . scaffold41700 WUBlastX LTR_DIRS 5129 5359 107 - . . scaffold41700 WUBlastX LTR_DIRS 5251 5961 490 - . . scaffold41700 WUBlastX LTR_Gypsy-Gmr1 9016 9864 150 - . . scaffold41700 WUBlastX LTR_Gypsy 9025 9708 213 - . . scaffold41700 WUBlastX LTR_Gypsy 9660 10001 63 - . . scaffold41700 GLEAN promoter 9998 10997 0.937841 + . ID=CGI_10005501; scaffold41700 GLEAN mRNA 10998 12013 0.937841 + . ID=CGI_10005501; scaffold41700 TRF Tandem_Repeat 12344 13192 1432 + . . scaffold41700 WUBlastX DNA_MuDR 19156 19428 52 - . . scaffold41700 WUBlastX DNA 19386 19766 38 - . . scaffold41700 WUBlastX DNA_MuDR 19506 19859 47 - . . scaffold41700 WUBlastX DNA_MuDR 19617 19778 67 - . . scaffold41700 WUBlastX DNA_MuDR 19644 19868 54 - . . scaffold41700 WUBlastX DNA_MuDR 19650 19817 72 - . . scaffold41700 WUBlastX DNA_MuDR 19650 19775 78 - . . scaffold41700 WUBlastX DNA 19882 20133 55 - . . scaffold41700 WUBlastX DNA_MuDR 19936 20130 61 - . . scaffold41700 TRF Tandem_Repeat 21151 21208 55 + . . scaffold41700 WUBlastX DNA_Crypton 25106 25699 28 - . . scaffold41700 WUBlastX LTR_Gypsy 36227 36325 37 - . . scaffold41700 WUBlastX LTR_Gypsy 36242 36328 42 - . . scaffold41700 WUBlastX LTR_Gypsy-Cigr 36322 36621 71 - . . scaffold41700 WUBlastX DNA_Harbinger 40173 40400 67 - . . scaffold41700 WUBlastX DNA_Harbinger 40254 40400 97 - . . scaffold41700 WUBlastX DNA_Harbinger 40697 40795 44 - . . scaffold41700 WUBlastX DNA_Harbinger 40928 41065 66 - . . scaffold41700 WUBlastX DNA_Harbinger 41350 41439 31 - . . scaffold41700 WUBlastX DNA 46400 46741 93 + . . scaffold41700 WUBlastX DNA_Zator 46741 46908 43 + . . scaffold41700 WUBlastX DNA_Zator 47104 47457 41 + . . scaffold41700 WUBlastX DNA_Harbinger 48628 48912 67 - . . scaffold41700 WUBlastX LTR_Gypsy-Cigr 49411 49611 74 - . . scaffold41700 WUBlastX LTR_Gypsy-Cigr 50688 50786 71 - . . scaffold41700 WUBlastX LINE_L1-Tx1 52535 53182 108 - . . scaffold41700 WUBlastX LINE_L1-Tx1 52818 53630 69 - . . scaffold41700 WUBlastX LINE_L1-Tx1 54227 54433 99 - . . scaffold41700 WUBlastX LINE_L1-Tx1 54290 54496 68 - . . scaffold41700 WUBlastX LINE_L1-Tx1 55751 55900 33 - . . scaffold41700 WUBlastX LINE_L1 55927 56367 249 - . . scaffold41700 GLEAN promoter 61822 62821 0.99493 + . ID=CGI_10005503; scaffold41700 GLEAN mRNA 62822 64018 0.99493 + . ID=CGI_10005503; scaffold41700 WUBlastX LTR_DIRS 63200 63949 279 + . . scaffold41700 WUBlastX LTR_Gypsy 63979 64068 22 + . . scaffold41700 WUBlastX LTR_DIRS 64048 65565 983 + . . scaffold41700 WUBlastX LTR_DIRS 65544 66029 306 + . . scaffold41700 WUBlastX LTR_DIRS 65879 66241 256 + . . scaffold41700 WUBlastX LTR_DIRS 66252 66737 343 + . . scaffold41700 TRF Tandem_Repeat 67116 67851 798 + . . scaffold41700 TRF Tandem_Repeat 67930 67959 60 + . . scaffold41700 TRF Tandem_Repeat 67993 68312 163 + . . scaffold41700 TRF Tandem_Repeat 71386 71424 78 + . . scaffold41700 GLEAN promoter 110010 111009 0.6496 + . ID=CGI_10005504; scaffold41700 WUBlastX LINE_CR1 110101 111399 992 + . . scaffold41700 GLEAN mRNA 111010 111507 0.6496 + . ID=CGI_10005504; scaffold41700 WUBlastX LINE_L1 111587 112387 78 - . . scaffold41700 WUBlastX LINE_CR1-L2 111614 112204 213 - . . scaffold41722 TRF Tandem_Repeat 2208 2957 940 + . . scaffold41722 TRF Tandem_Repeat 2962 3847 1307 + . . scaffold41722 WUBlastX LINE_CR1-L2 7429 7509 37 + . . scaffold41722 WUBlastX LINE_L2 7490 7831 57 + . . scaffold41722 WUBlastX LINE_CR1 7852 8028 45 + . . scaffold41722 WUBlastX LINE_L2 7879 8037 96 + . . scaffold41722 WUBlastX LINE_CR1 8064 8288 30 + . . scaffold41722 TRF Tandem_Repeat 9047 9233 311 + . . scaffold41722 TRF Tandem_Repeat 22843 22888 92 + . . scaffold41722 GLEAN promoter 27342 28341 0.732146 + . ID=CGI_10005458; scaffold41722 GLEAN mRNA 28342 45061 0.732146 + . ID=CGI_10005458; scaffold41722 TRF Tandem_Repeat 32006 32828 1131 + . . scaffold41722 TRF Tandem_Repeat 32006 32925 1081 + . . scaffold41722 TRF Tandem_Repeat 41876 42014 269 + . . scaffold41722 TRF Tandem_Repeat 42142 42338 349 + . . scaffold41722 GLEAN promoter 48723 49722 1 + . ID=CGI_10005459; scaffold41722 GLEAN mRNA 49723 54490 1 + . ID=CGI_10005459; scaffold41722 TRF Tandem_Repeat 52310 52466 188 + . . scaffold41722 GLEAN promoter 67662 68661 0.990732 + . ID=CGI_10005460; scaffold41722 GLEAN mRNA 68662 84533 0.990732 + . ID=CGI_10005460; scaffold41722 TRF Tandem_Repeat 77896 78127 455 + . . scaffold41722 GLEAN promoter 96005 97004 0.98826 + . ID=CGI_10005461; scaffold41722 GLEAN mRNA 97005 104008 0.98826 + . ID=CGI_10005461; scaffold41722 TRF Tandem_Repeat 99687 100068 595 + . . scaffold41722 GLEAN mRNA 103877 107291 0.999999 - . ID=CGI_10005462; scaffold41722 TRF Tandem_Repeat 104251 104333 58 + . . scaffold41722 TRF Tandem_Repeat 104265 104349 65 + . . scaffold41722 TRF Tandem_Repeat 104336 104538 214 + . . scaffold41722 GLEAN promoter 107292 108291 0.999999 - . ID=CGI_10005462; scaffold41722 GLEAN promoter 109384 110383 0.999673 + . ID=CGI_10005463; scaffold41722 GLEAN mRNA 110384 120559 0.999673 + . ID=CGI_10005463; scaffold41722 TRF Tandem_Repeat 110572 110791 129 + . . scaffold41722 TRF Tandem_Repeat 111144 111326 223 + . . scaffold41722 TRF Tandem_Repeat 111302 111589 346 + . . scaffold41722 TRF Tandem_Repeat 111302 111589 344 + . . scaffold41722 TRF Tandem_Repeat 114581 115384 735 + . . scaffold41722 TRF Tandem_Repeat 114581 115091 568 + . . scaffold41722 TRF Tandem_Repeat 115129 115381 310 + . . scaffold41722 GLEAN promoter 121379 122378 0.99998 + . ID=CGI_10005465; scaffold41722 GLEAN mRNA 121928 122104 1 - . ID=CGI_10005464; scaffold41722 GLEAN promoter 122105 123104 1 - . ID=CGI_10005464; scaffold41722 GLEAN mRNA 122379 122735 0.99998 + . ID=CGI_10005465; scaffold41722 TRF Tandem_Repeat 123518 123611 99 + . . scaffold41722 GLEAN mRNA 124212 125392 1 - . ID=CGI_10005466; scaffold41722 GLEAN promoter 125393 126392 1 - . ID=CGI_10005466; scaffold41730 GLEAN promoter 117 1116 0.969076 + . ID=CGI_10005525; scaffold41730 TRF Tandem_Repeat 246 367 54 + . . scaffold41730 TRF Tandem_Repeat 1064 1107 88 + . . scaffold41730 GLEAN mRNA 1117 16923 0.969076 + . ID=CGI_10005525; scaffold41730 TRF Tandem_Repeat 7130 7448 446 + . . scaffold41730 TRF Tandem_Repeat 8741 8879 100 + . . scaffold41730 TRF Tandem_Repeat 8789 8879 78 + . . scaffold41730 TRF Tandem_Repeat 10962 10993 50 + . . scaffold41730 TRF Tandem_Repeat 27626 27830 182 + . . scaffold41730 TRF Tandem_Repeat 32912 32943 64 + . . scaffold41730 TRF Tandem_Repeat 38099 38154 112 + . . scaffold41730 GLEAN mRNA 60136 62407 0.669071 - . ID=CGI_10005527; scaffold41730 GLEAN promoter 62408 63407 0.669071 - . ID=CGI_10005527; scaffold41730 WUBlastX DNA_TcMar-Marin 63594 63929 40 + . . scaffold41730 WUBlastX DNA_TcMar-Marin 63901 64140 39 + . . scaffold41730 WUBlastX DNA_TcMar-Marin 64049 64477 52 + . . scaffold41730 WUBlastX DNA_TcMar-Marin 64238 64456 61 + . . scaffold41730 GLEAN mRNA 78024 82205 0.992486 - . ID=CGI_10005528; scaffold41730 GLEAN promoter 82206 83205 0.992486 - . ID=CGI_10005528; scaffold41730 GLEAN mRNA 83020 103820 0.510974 - . ID=CGI_10005529; scaffold41730 TRF Tandem_Repeat 89490 89535 83 + . . scaffold41730 TRF Tandem_Repeat 91028 91708 724 + . . scaffold41730 TRF Tandem_Repeat 95720 95756 74 + . . scaffold41730 TRF Tandem_Repeat 103402 103468 134 + . . scaffold41730 GLEAN promoter 103821 104820 0.510974 - . ID=CGI_10005529; scaffold41730 GLEAN mRNA 104165 107871 0.999496 - . ID=CGI_10005530; scaffold41730 WUBlastX LINE_L2 104186 104311 27 - . . scaffold41730 WUBlastX LINE_L2 104283 104522 36 - . . scaffold41730 TRF Tandem_Repeat 104526 104550 50 + . . scaffold41730 GLEAN promoter 107872 108871 0.999496 - . ID=CGI_10005530; scaffold41730 GLEAN promoter 110235 111234 0.999676 + . ID=CGI_10005531; scaffold41730 GLEAN mRNA 111235 126037 0.999676 + . ID=CGI_10005531; scaffold41730 WUBlastX DNA_Zator 115227 115748 72 - . . scaffold41730 TRF Tandem_Repeat 120692 121489 1274 + . . scaffold41730 TRF Tandem_Repeat 126275 126456 346 + . . scaffold41730 TRF Tandem_Repeat 127321 127362 66 + . . scaffold41732 GLEAN mRNA 93 3891 0.96742 - . ID=CGI_10005474; scaffold41732 GLEAN promoter 3702 4701 1 + . ID=CGI_10005475; scaffold41732 GLEAN promoter 3892 4891 0.96742 - . ID=CGI_10005474; scaffold41732 GLEAN mRNA 4702 6251 1 + . ID=CGI_10005475; scaffold41732 GLEAN mRNA 6892 8783 0.965751 - . ID=CGI_10005476; scaffold41732 GLEAN promoter 8784 9783 0.965751 - . ID=CGI_10005476; scaffold41732 GLEAN promoter 9730 10729 0.479705 + . ID=CGI_10005477; scaffold41732 GLEAN mRNA 10730 18786 0.479705 + . ID=CGI_10005477; scaffold41732 TRF Tandem_Repeat 16726 16754 58 + . . scaffold41732 GLEAN mRNA 19646 61723 0.444801 - . ID=CGI_10005478; scaffold41732 TRF Tandem_Repeat 46041 46241 136 + . . scaffold41732 TRF Tandem_Repeat 46045 46136 76 + . . scaffold41732 TRF Tandem_Repeat 46078 46238 90 + . . scaffold41732 TRF Tandem_Repeat 47628 47800 197 + . . scaffold41732 WUBlastX LINE_RTE-X 57329 57901 169 - . . scaffold41732 WUBlastX LINE_RTE-X 57906 58424 303 - . . scaffold41732 WUBlastX LINE_RTE-X 58448 58996 350 - . . scaffold41732 WUBlastX LINE_L2 58448 59113 56 - . . scaffold41732 WUBlastX LINE_L1-Tx1 59573 59674 22 - . . scaffold41732 WUBlastX LINE_Rex-Babar 59588 59659 26 - . . scaffold41732 GLEAN promoter 61724 62723 0.444801 - . ID=CGI_10005478; scaffold41732 GLEAN promoter 67534 68533 1 + . ID=CGI_10005479; scaffold41732 GLEAN mRNA 68534 70025 1 + . ID=CGI_10005479; scaffold41732 GLEAN mRNA 73347 76741 1 - . ID=CGI_10005480; scaffold41732 GLEAN promoter 75764 76763 1 + . ID=CGI_10005481; scaffold41732 GLEAN promoter 76742 77741 1 - . ID=CGI_10005480; scaffold41732 GLEAN mRNA 76764 77926 1 + . ID=CGI_10005481; scaffold41732 GLEAN mRNA 79477 80744 0.937847 - . ID=CGI_10005482; scaffold41732 GLEAN promoter 80745 81744 0.937847 - . ID=CGI_10005482; scaffold41732 TRF Tandem_Repeat 82128 82270 135 + . . scaffold41732 GLEAN promoter 83286 84285 0.562436 + . ID=CGI_10005483; scaffold41732 GLEAN mRNA 84286 89008 0.562436 + . ID=CGI_10005483; scaffold41732 TRF Tandem_Repeat 87885 88159 361 + . . scaffold41732 TRF Tandem_Repeat 87885 88159 246 + . . scaffold41732 GLEAN mRNA 88890 102319 0.999368 - . ID=CGI_10005484; scaffold41732 TRF Tandem_Repeat 100782 100841 120 + . . scaffold41732 GLEAN promoter 102320 103319 0.999368 - . ID=CGI_10005484; scaffold41732 WUBlastX LINE_RTE-X 107192 107386 20 + . . scaffold41732 GLEAN mRNA 111139 112377 0.998274 - . ID=CGI_10005485; scaffold41732 GLEAN promoter 112378 113377 0.998274 - . ID=CGI_10005485; scaffold41732 GLEAN mRNA 112397 119454 0.784507 - . ID=CGI_10005486; scaffold41732 GLEAN promoter 119455 120454 0.784507 - . ID=CGI_10005486; scaffold41732 TRF Tandem_Repeat 120386 120421 72 + . . scaffold41732 TRF Tandem_Repeat 121836 122020 156 + . . scaffold41732 TRF Tandem_Repeat 122127 123406 2016 + . . scaffold41732 WUBlastX LINE_CR1-L2 124312 124920 28 - . . scaffold41732 WUBlastX LINE_CR1-L2 124405 124932 138 - . . scaffold41732 WUBlastX LINE_CR1-L2 124594 124929 149 - . . scaffold41732 TRF Tandem_Repeat 124941 127698 3882 + . . scaffold41732 TRF Tandem_Repeat 124941 127698 2862 + . . scaffold41740 GLEAN mRNA 658 1119 0.593391 - . ID=CGI_10005581; scaffold41740 GLEAN promoter 1120 2119 0.593391 - . ID=CGI_10005581; scaffold41740 WUBlastX LINE_L1 1597 1986 46 - . . scaffold41740 GLEAN mRNA 4661 5608 0.747673 - . ID=CGI_10005582; scaffold41740 GLEAN promoter 5609 6608 0.747673 - . ID=CGI_10005582; scaffold41740 TRF Tandem_Repeat 8284 8318 70 + . . scaffold41740 GLEAN mRNA 8589 10244 0.986779 - . ID=CGI_10005583; scaffold41740 GLEAN promoter 10245 11244 0.986779 - . ID=CGI_10005583; scaffold41740 GLEAN mRNA 21190 30083 0.963667 - . ID=CGI_10005584; scaffold41740 WUBlastX LINE_L2 22213 22509 20 - . . scaffold41740 GLEAN promoter 30084 31083 0.963667 - . ID=CGI_10005584; scaffold41740 TRF Tandem_Repeat 34786 34876 92 + . . scaffold41740 TRF Tandem_Repeat 56827 56872 92 + . . scaffold41740 TRF Tandem_Repeat 57243 57349 142 + . . scaffold41740 TRF Tandem_Repeat 58814 58959 112 + . . scaffold41740 TRF Tandem_Repeat 58869 58959 146 + . . scaffold41740 GLEAN mRNA 59974 80249 1 - . ID=CGI_10005585; scaffold41740 TRF Tandem_Repeat 65114 65166 106 + . . scaffold41740 TRF Tandem_Repeat 73923 75170 1815 + . . scaffold41740 TRF Tandem_Repeat 76493 76546 74 + . . scaffold41740 GLEAN promoter 80250 81249 1 - . ID=CGI_10005585; scaffold41740 TRF Tandem_Repeat 82487 82567 153 + . . scaffold41740 GLEAN promoter 83312 84311 0.999949 + . ID=CGI_10005586; scaffold41740 GLEAN mRNA 84312 91930 0.999949 + . ID=CGI_10005586; scaffold41740 GLEAN mRNA 113050 113205 0.648802 - . ID=CGI_10005587; scaffold41740 GLEAN promoter 113206 114205 0.648802 - . ID=CGI_10005587; scaffold41740 TRF Tandem_Repeat 114069 114121 97 + . . scaffold41740 WUBlastX LINE_L1-Tx1 114373 114759 82 - . . scaffold41740 WUBlastX LINE_L1 114758 115123 23 - . . scaffold41740 WUBlastX LINE_L1-Tx1 114767 115024 122 - . . scaffold41740 GLEAN promoter 116319 117318 0.247638 + . ID=CGI_10005588; scaffold41740 GLEAN mRNA 117319 125321 0.247638 + . ID=CGI_10005588; scaffold41740 TRF Tandem_Repeat 122717 122881 213 + . . scaffold41740 GLEAN mRNA 128935 130074 0.579463 - . ID=CGI_10005589; scaffold41740 WUBlastX DNA_Sola 128938 129765 186 - . . scaffold41740 WUBlastX DNA_Sola 129202 130029 26 - . . scaffold41740 GLEAN promoter 130075 130103 0.579463 - . ID=CGI_10005589; scaffold41744 GLEAN promoter 19768 20767 1 + . ID=CGI_10005549; scaffold41744 GLEAN mRNA 20768 26653 1 + . ID=CGI_10005549; scaffold41744 GLEAN promoter 27949 28948 0.44627 + . ID=CGI_10005550; scaffold41744 GLEAN mRNA 28949 34069 0.44627 + . ID=CGI_10005550; scaffold41744 GLEAN mRNA 73024 91934 0.999228 - . ID=CGI_10005551; scaffold41744 GLEAN promoter 91935 92934 0.999228 - . ID=CGI_10005551; scaffold41744 GLEAN mRNA 104578 119876 0.342267 - . ID=CGI_10005552; scaffold41744 GLEAN promoter 119877 120876 0.342267 - . ID=CGI_10005552; scaffold41754 TRF Tandem_Repeat 13488 13534 94 + . . scaffold41754 TRF Tandem_Repeat 18056 18122 64 + . . scaffold41754 TRF Tandem_Repeat 18845 18934 164 + . . scaffold41754 GLEAN mRNA 20140 74900 0.481256 - . ID=CGI_10005557; scaffold41754 TRF Tandem_Repeat 20617 20683 62 + . . scaffold41754 TRF Tandem_Repeat 45894 45925 64 + . . scaffold41754 TRF Tandem_Repeat 70049 70134 129 + . . scaffold41754 GLEAN promoter 74901 75900 0.481256 - . ID=CGI_10005557; scaffold41754 TRF Tandem_Repeat 77311 77358 96 + . . scaffold41754 TRF Tandem_Repeat 77948 78039 85 + . . scaffold41754 TRF Tandem_Repeat 77948 78039 94 + . . scaffold41754 TRF Tandem_Repeat 77949 78011 72 + . . scaffold41754 TRF Tandem_Repeat 77957 78040 69 + . . scaffold41754 GLEAN mRNA 79569 95321 0.84848 - . ID=CGI_10005558; scaffold41754 TRF Tandem_Repeat 88147 88206 93 + . . scaffold41754 WUBlastX LINE_RTE-X 88595 88810 29 + . . scaffold41754 WUBlastX LINE_RTE-X 88595 88744 37 + . . scaffold41754 WUBlastX LINE_RTE-X 88815 89123 67 + . . scaffold41754 WUBlastX LINE_RTE-X 89090 89308 30 + . . scaffold41754 GLEAN promoter 90726 91725 0.593391 + . ID=CGI_10005559; scaffold41754 GLEAN mRNA 91726 94203 0.593391 + . ID=CGI_10005559; scaffold41754 GLEAN promoter 94140 95139 1 + . ID=CGI_10005560; scaffold41754 GLEAN mRNA 95140 97204 1 + . ID=CGI_10005560; scaffold41754 GLEAN promoter 95322 96321 0.84848 - . ID=CGI_10005558; scaffold41754 GLEAN promoter 101535 102534 0.5 + . ID=CGI_10005561; scaffold41754 GLEAN mRNA 102535 103689 0.5 + . ID=CGI_10005561; scaffold41754 GLEAN mRNA 105330 107636 1 - . ID=CGI_10005562; scaffold41754 GLEAN promoter 107637 108636 1 - . ID=CGI_10005562; scaffold41754 TRF Tandem_Repeat 108121 108162 84 + . . scaffold41754 GLEAN mRNA 110160 121029 0.999929 - . ID=CGI_10005563; scaffold41754 TRF Tandem_Repeat 120777 120839 119 + . . scaffold41754 GLEAN promoter 121030 122029 0.999929 - . ID=CGI_10005563; scaffold41754 GLEAN mRNA 126571 128471 0.999928 - . ID=CGI_10005564; scaffold41754 GLEAN promoter 128472 129471 0.999928 - . ID=CGI_10005564; scaffold41754 TRF Tandem_Repeat 129043 129191 97 + . . scaffold41754 TRF Tandem_Repeat 129107 129253 73 + . . scaffold41762 GLEAN promoter 1202 2201 0.999975 + . ID=CGI_10005607; scaffold41762 TRF Tandem_Repeat 1949 1999 102 + . . scaffold41762 GLEAN mRNA 2202 16003 0.999975 + . ID=CGI_10005607; scaffold41762 TRF Tandem_Repeat 4508 4558 66 + . . scaffold41762 WUBlastX DNA_TcMar-Tc1 19303 19431 23 - . . scaffold41762 WUBlastX DNA_TcMar-Tc1 19430 19864 62 - . . scaffold41762 WUBlastX DNA_TcMar-Tc1 19658 19906 55 - . . scaffold41762 WUBlastX DNA_TcMar-Tc1 19706 19975 37 - . . scaffold41762 TRF Tandem_Repeat 28088 28305 296 + . . scaffold41762 TRF Tandem_Repeat 31185 31257 137 + . . scaffold41762 TRF Tandem_Repeat 47994 48020 54 + . . scaffold41762 WUBlastX LINE_L1 48530 48796 50 + . . scaffold41762 TRF Tandem_Repeat 49115 49407 273 + . . scaffold41762 TRF Tandem_Repeat 49119 49405 351 + . . scaffold41762 WUBlastX LINE_L1-Tx1 49760 50056 48 + . . scaffold41762 WUBlastX RC_Helitron 62570 65965 1837 - . . scaffold41762 WUBlastX DNA_Kolobok 71336 71557 47 + . . scaffold41762 WUBlastX DNA_Kolobok 71336 71476 48 + . . scaffold41762 WUBlastX DNA_Kolobok 73136 73372 112 + . . scaffold41762 TRF Tandem_Repeat 74862 74938 154 + . . scaffold41762 TRF Tandem_Repeat 84227 84288 124 + . . scaffold41762 WUBlastX LINE_RTE-RTE 85912 86673 41 + . . scaffold41762 WUBlastX LINE_L1-Tx1 86032 87189 227 + . . scaffold41762 WUBlastX LINE_L1-Tx1 86128 87102 537 + . . scaffold41762 WUBlastX LINE_L1-Tx1 87069 88289 142 + . . scaffold41762 TRF Tandem_Repeat 90069 90862 1011 + . . scaffold41762 GLEAN promoter 100244 101243 0.999319 + . ID=CGI_10005608; scaffold41762 GLEAN mRNA 101244 102515 0.999319 + . ID=CGI_10005608; scaffold41762 TRF Tandem_Repeat 102986 103293 297 + . . scaffold41762 TRF Tandem_Repeat 103093 103157 53 + . . scaffold41762 TRF Tandem_Repeat 103211 103286 80 + . . scaffold41762 TRF Tandem_Repeat 130572 130634 126 + . . scaffold41766 TRF Tandem_Repeat 12623 12661 78 + . . scaffold41766 TRF Tandem_Repeat 12692 12748 105 + . . scaffold41766 TRF Tandem_Repeat 12761 12801 82 + . . scaffold41766 TRF Tandem_Repeat 18782 19276 720 + . . scaffold41766 TRF Tandem_Repeat 22218 22461 406 + . . scaffold41766 TRF Tandem_Repeat 23015 23057 86 + . . scaffold41766 GLEAN mRNA 24624 37050 0.752559 - . ID=CGI_10005601; scaffold41766 WUBlastX LTR_Gypsy 31418 31501 21 - . . scaffold41766 WUBlastX LTR_Gypsy 32111 32359 36 - . . scaffold41766 WUBlastX LTR_Gypsy 32174 32359 61 - . . scaffold41766 WUBlastX LTR_Gypsy 32206 32490 69 - . . scaffold41766 WUBlastX LTR_Gypsy 32263 32484 93 - . . scaffold41766 WUBlastX LTR_Gypsy 32362 32613 56 - . . scaffold41766 GLEAN promoter 36376 37375 0.544153 + . ID=CGI_10005602; scaffold41766 GLEAN promoter 37051 38050 0.752559 - . ID=CGI_10005601; scaffold41766 GLEAN mRNA 37376 38982 0.544153 + . ID=CGI_10005602; scaffold41766 TRF Tandem_Repeat 37857 37910 101 + . . scaffold41766 TRF Tandem_Repeat 40779 40842 128 + . . scaffold41766 GLEAN promoter 42757 43756 0.0583207 + . ID=CGI_10005603; scaffold41766 GLEAN mRNA 43757 57866 0.0583207 + . ID=CGI_10005603; scaffold41766 TRF Tandem_Repeat 47816 47861 74 + . . scaffold41766 TRF Tandem_Repeat 47952 47995 88 + . . scaffold41766 TRF Tandem_Repeat 48379 48412 59 + . . scaffold41766 TRF Tandem_Repeat 49116 49166 102 + . . scaffold41766 TRF Tandem_Repeat 55448 55521 148 + . . scaffold41766 GLEAN mRNA 55779 56653 0.975984 - . ID=CGI_10005604; scaffold41766 GLEAN promoter 56654 57653 0.975984 - . ID=CGI_10005604; scaffold41766 TRF Tandem_Repeat 57679 57715 74 + . . scaffold41766 TRF Tandem_Repeat 61523 61591 129 + . . scaffold41766 TRF Tandem_Repeat 61763 61794 55 + . . scaffold41766 GLEAN mRNA 61910 62350 0.993085 - . ID=CGI_10005605; scaffold41766 GLEAN promoter 62351 63350 0.993085 - . ID=CGI_10005605; scaffold41766 TRF Tandem_Repeat 64016 64068 106 + . . scaffold41766 TRF Tandem_Repeat 85662 85932 175 + . . scaffold41766 TRF Tandem_Repeat 85743 85932 283 + . . scaffold41766 WUBlastX DNA_TcMar-Tc1 86051 86149 58 + . . scaffold41766 WUBlastX DNA_TcMar-Tc1 86060 86293 55 + . . scaffold41766 WUBlastX DNA_TcMar-Tc1 86066 86215 82 + . . scaffold41766 WUBlastX DNA_TcMar-Tc1 86075 86191 91 + . . scaffold41766 WUBlastX DNA_TcMar-Tc1 86271 86396 59 - . . scaffold41766 WUBlastX LINE_L1-Tx1 93929 94138 85 - . . scaffold41766 WUBlastX LINE_L1-Tx1 94146 94388 126 - . . scaffold41766 WUBlastX LINE_L1-Tx1 94227 94478 54 - . . scaffold41766 WUBlastX LINE_RTE-X 114066 114431 23 + . . scaffold41766 WUBlastX LINE_RTE-X 114093 114395 58 + . . scaffold41766 TRF Tandem_Repeat 122145 122318 165 + . . scaffold41766 TRF Tandem_Repeat 122147 122318 199 + . . scaffold41766 TRF Tandem_Repeat 122147 122322 187 + . . scaffold41766 TRF Tandem_Repeat 124139 124214 64 + . . scaffold41766 GLEAN mRNA 124543 130225 0.884338 - . ID=CGI_10005606; scaffold41766 GLEAN promoter 130226 130768 0.884338 - . ID=CGI_10005606; scaffold41772 TRF Tandem_Repeat 140 1391 1737 + . . scaffold41772 GLEAN promoter 1813 2812 1 + . ID=CGI_10005619; scaffold41772 GLEAN mRNA 2813 10492 1 + . ID=CGI_10005619; scaffold41772 TRF Tandem_Repeat 11970 12020 61 + . . scaffold41772 TRF Tandem_Repeat 12193 12955 1336 + . . scaffold41772 TRF Tandem_Repeat 36411 36479 129 + . . scaffold41772 TRF Tandem_Repeat 38634 39027 381 + . . scaffold41772 TRF Tandem_Repeat 40307 40380 130 + . . scaffold41772 TRF Tandem_Repeat 64198 64250 106 + . . scaffold41772 TRF Tandem_Repeat 64674 65123 686 + . . scaffold41772 TRF Tandem_Repeat 65331 65377 58 + . . scaffold41772 TRF Tandem_Repeat 65482 65518 65 + . . scaffold41772 TRF Tandem_Repeat 65995 66046 104 + . . scaffold41772 GLEAN promoter 66044 67043 0.992438 + . ID=CGI_10005620; scaffold41772 TRF Tandem_Repeat 66361 66404 88 + . . scaffold41772 TRF Tandem_Repeat 66613 66649 56 + . . scaffold41772 TRF Tandem_Repeat 66719 66769 102 + . . scaffold41772 GLEAN mRNA 67044 71169 0.992438 + . ID=CGI_10005620; scaffold41772 GLEAN promoter 70546 71545 0.987768 + . ID=CGI_10005621; scaffold41772 GLEAN mRNA 71546 79432 0.987768 + . ID=CGI_10005621; scaffold41772 TRF Tandem_Repeat 80077 80273 295 + . . scaffold41772 TRF Tandem_Repeat 88443 88502 84 + . . scaffold41772 TRF Tandem_Repeat 91705 91742 76 + . . scaffold41772 TRF Tandem_Repeat 97258 97297 62 + . . scaffold41772 WUBlastX LTR_Gypsy 98899 99348 39 + . . scaffold41772 WUBlastX LTR_Gypsy 99121 99351 97 + . . scaffold41772 WUBlastX LTR_Gypsy 99190 99423 54 + . . scaffold41772 WUBlastX LTR_Gypsy 99422 99757 22 + . . scaffold41772 WUBlastX LTR_Gypsy-Cigr 99437 99622 46 + . . scaffold41772 WUBlastX LTR_Gypsy 99437 99592 88 + . . scaffold41772 WUBlastX LTR_Gypsy 99757 99996 56 + . . scaffold41772 WUBlastX LTR_Gypsy-Cigr 99799 100005 108 + . . scaffold41772 WUBlastX LTR_Gypsy 100004 100387 99 + . . scaffold41772 WUBlastX LTR_Gypsy 100004 100495 83 + . . scaffold41772 WUBlastX LTR_Gypsy 100384 100533 64 + . . scaffold41772 WUBlastX LTR_Gypsy 100408 100620 57 + . . scaffold41776 TRF Tandem_Repeat 3735 3773 78 + . . scaffold41776 WUBlastX LINE_RTE-X 14851 14952 34 + . . scaffold41776 WUBlastX LINE_RTE-X 14872 15081 70 + . . scaffold41776 WUBlastX LINE_RTE-X 15099 15464 32 + . . scaffold41776 WUBlastX LINE_RTE-X 15138 15404 76 + . . scaffold41776 TRF Tandem_Repeat 15913 15961 98 + . . scaffold41776 TRF Tandem_Repeat 17198 17232 70 + . . scaffold41776 TRF Tandem_Repeat 18353 18398 83 + . . scaffold41776 TRF Tandem_Repeat 22430 22466 74 + . . scaffold41776 TRF Tandem_Repeat 23699 23748 93 + . . scaffold41776 TRF Tandem_Repeat 30340 30368 58 + . . scaffold41776 GLEAN promoter 32685 33684 0.542101 + . ID=CGI_10005630; scaffold41776 WUBlastX DNA_P 33490 33771 93 + . . scaffold41776 GLEAN mRNA 33685 33867 0.542101 + . ID=CGI_10005630; scaffold41776 WUBlastX LTR_Gypsy 42029 42160 36 - . . scaffold41776 WUBlastX LTR_Gypsy 42106 44541 1665 - . . scaffold41776 WUBlastX LTR_Gypsy 44546 45619 896 - . . scaffold41776 WUBlastX LTR_Gypsy 45591 45674 21 - . . scaffold41776 WUBlastX LTR_Gypsy 48629 49261 167 - . . scaffold41776 WUBlastX LTR_Gypsy 48761 49444 124 - . . scaffold41776 WUBlastX LTR_Gypsy 49393 50244 362 - . . scaffold41776 WUBlastX LTR_Gypsy 49564 50271 431 - . . scaffold41776 WUBlastX LINE_L1 60741 60878 41 + . . scaffold41776 WUBlastX LTR_Gypsy 90260 90382 35 + . . scaffold41776 WUBlastX LTR_Gypsy 90266 90421 23 + . . scaffold41776 WUBlastX LTR_Gypsy 90498 90776 47 + . . scaffold41776 WUBlastX LTR_Gypsy 93754 93936 55 + . . scaffold41776 WUBlastX LTR_Gypsy 93808 93939 57 + . . scaffold41776 WUBlastX LTR_Gypsy 114048 114317 64 + . . scaffold41776 WUBlastX LTR_Gypsy 114105 114830 231 + . . scaffold41776 WUBlastX LTR_Gypsy 114564 114887 121 + . . scaffold41776 WUBlastX LTR_Gypsy 114823 115071 59 + . . scaffold41776 WUBlastX LTR_Gypsy 115025 115186 161 + . . scaffold41776 WUBlastX LTR_Gypsy 115191 115406 56 + . . scaffold41776 WUBlastX LTR_Gypsy 115564 115683 33 + . . scaffold41776 WUBlastX LTR_Gypsy 115570 115713 25 + . . scaffold41776 WUBlastX LTR_Gypsy 115706 116164 213 + . . scaffold41776 WUBlastX LTR_Gypsy 115932 116279 92 + . . scaffold41776 WUBlastX LINE_Penelope 116300 117421 209 - . . scaffold41776 WUBlastX LINE_Penelope 116324 117208 540 - . . scaffold41776 WUBlastX LINE_Penelope 117361 117519 25 + . . scaffold41776 WUBlastX LINE_Penelope 117636 117782 39 + . . scaffold41776 WUBlastX LINE_Penelope 117639 117749 59 + . . scaffold41776 TRF Tandem_Repeat 119134 119187 101 + . . scaffold41776 GLEAN mRNA 119819 129900 0.65834 - . ID=CGI_10005631; scaffold41776 TRF Tandem_Repeat 129612 129641 60 + . . scaffold41776 GLEAN promoter 129901 130900 0.65834 - . ID=CGI_10005631; scaffold41786 GLEAN promoter 1 107 0.999795 + . ID=CGI_10005622; scaffold41786 GLEAN mRNA 108 5322 0.999795 + . ID=CGI_10005622; scaffold41786 WUBlastX LTR_DIRS 13836 14108 48 + . . scaffold41786 WUBlastX LTR_DIRS 13836 14063 77 + . . scaffold41786 WUBlastX LTR_DIRS 14098 14430 35 + . . scaffold41786 WUBlastX LTR_DIRS 14161 14424 57 + . . scaffold41786 WUBlastX LTR_DIRS 14444 14749 45 + . . scaffold41786 TRF Tandem_Repeat 27747 28387 758 + . . scaffold41786 TRF Tandem_Repeat 41951 41991 55 + . . scaffold41786 TRF Tandem_Repeat 45945 46211 195 + . . scaffold41786 WUBlastX LTR_Gypsy 50203 50820 124 + . . scaffold41786 WUBlastX LTR_Gypsy 50326 50928 34 + . . scaffold41786 WUBlastX LTR_Gypsy 51086 51310 39 + . . scaffold41786 WUBlastX LTR_Gypsy 51167 52081 95 + . . scaffold41786 WUBlastX LTR_Gypsy 52051 53682 823 + . . scaffold41786 WUBlastX LTR_Gypsy 52099 53292 959 + . . scaffold41786 WUBlastX LTR_Gypsy 53720 54403 270 + . . scaffold41786 WUBlastX LTR_Gypsy 53747 54313 425 + . . scaffold41786 WUBlastX LTR_Gypsy 54310 54783 233 + . . scaffold41786 WUBlastX LTR_Gypsy 54316 54960 161 + . . scaffold41786 WUBlastX LTR_Gypsy-Cigr 54793 55026 34 + . . scaffold41786 WUBlastX LTR_Copia 55300 55359 25 + . . scaffold41786 WUBlastX LINE_L2 56398 56616 24 + . . scaffold41786 WUBlastX LINE_CR1 56434 56664 96 + . . scaffold41786 WUBlastX LINE_CR1 56684 57094 96 + . . scaffold41786 WUBlastX LINE_CR1 56699 57016 151 + . . scaffold41786 WUBlastX LINE_L2 57088 57231 22 + . . scaffold41786 WUBlastX LINE_CR1 57135 57839 282 + . . scaffold41786 WUBlastX LINE_CR1 57189 57761 316 + . . scaffold41786 WUBlastX LINE_CR1 57758 58009 202 + . . scaffold41786 WUBlastX LINE_CR1 57908 58030 20 + . . scaffold41786 WUBlastX LINE_CR1 58032 58250 54 + . . scaffold41786 WUBlastX LINE_CR1 58032 58205 105 + . . scaffold41786 WUBlastX LINE_CR1 58555 59115 107 + . . scaffold41786 WUBlastX LINE_CR1 58693 59199 231 + . . scaffold41786 WUBlastX LINE_CR1 58702 59106 284 + . . scaffold41786 WUBlastX LINE_CR1 59106 59309 58 + . . scaffold41786 WUBlastX LINE_CR1-L2 59187 59348 26 + . . scaffold41786 TRF Tandem_Repeat 62519 63169 468 + . . scaffold41786 WUBlastX DNA_IS4EU 68962 69186 92 - . . scaffold41786 WUBlastX DNA_IS4EU 68998 69294 63 - . . scaffold41786 WUBlastX DNA_TcMar-Tc1 73152 73550 50 + . . scaffold41786 TRF Tandem_Repeat 75650 75706 114 + . . scaffold41786 TRF Tandem_Repeat 75927 76019 186 + . . scaffold41786 TRF Tandem_Repeat 81619 81670 68 + . . scaffold41786 GLEAN mRNA 81774 95507 0.798966 - . ID=CGI_10005624; scaffold41786 TRF Tandem_Repeat 82624 82670 94 + . . scaffold41786 TRF Tandem_Repeat 90336 90377 84 + . . scaffold41786 GLEAN promoter 95041 96040 0.737665 + . ID=CGI_10005625; scaffold41786 TRF Tandem_Repeat 95273 95317 90 + . . scaffold41786 GLEAN promoter 95508 96507 0.798966 - . ID=CGI_10005624; scaffold41786 GLEAN mRNA 96041 108168 0.737665 + . ID=CGI_10005625; scaffold41786 TRF Tandem_Repeat 99335 99822 832 + . . scaffold41786 GLEAN promoter 108063 109062 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 109057 109458 22 + . . scaffold41786 GLEAN mRNA 109063 112441 0.994534 + . ID=CGI_10005626; scaffold41786 WUBlastX DNA_hAT-Tip100 109138 109902 93 + . . scaffold41786 WUBlastX DNA_hAT 109348 109917 161 + . . scaffold41786 WUBlastX DNA_hAT-Tip100 110005 110316 144 + . . scaffold41786 WUBlastX DNA_hAT-Tip100 111514 111771 42 + . . scaffold41786 WUBlastX DNA_hAT-Tip100 111550 111768 59 + . . scaffold41786 WUBlastX DNA_hAT-Tip100 111589 111762 61 + . . scaffold41786 GLEAN promoter 115090 116089 0.844268 + . ID=CGI_10005627; scaffold41786 GLEAN mRNA 116090 126717 0.844268 + . ID=CGI_10005627; scaffold41786 GLEAN mRNA 127217 131376 1 - . ID=CGI_10005628; scaffold41786 GLEAN promoter 131377 131722 1 - . ID=CGI_10005628; scaffold41792 GLEAN promoter 797 1796 1 + . ID=CGI_10005632; scaffold41792 GLEAN mRNA 1797 7186 1 + . ID=CGI_10005632; scaffold41792 GLEAN promoter 11345 12344 0.839194 + . ID=CGI_10005633; scaffold41792 GLEAN mRNA 12345 26433 0.839194 + . ID=CGI_10005633; scaffold41792 GLEAN mRNA 32797 33219 0.776794 - . ID=CGI_10005634; scaffold41792 GLEAN promoter 33220 34219 0.776794 - . ID=CGI_10005634; scaffold41792 GLEAN promoter 35647 36646 0.999287 + . ID=CGI_10005635; scaffold41792 GLEAN mRNA 36647 41707 0.999287 + . ID=CGI_10005635; scaffold41792 GLEAN mRNA 43547 54090 0.999995 - . ID=CGI_10005636; scaffold41792 GLEAN promoter 54091 55090 0.999995 - . ID=CGI_10005636; scaffold41792 GLEAN mRNA 62298 64759 0.991295 - . ID=CGI_10005637; scaffold41792 GLEAN promoter 64760 65759 0.991295 - . ID=CGI_10005637; scaffold41792 GLEAN mRNA 72647 92865 0.99996 - . ID=CGI_10005638; scaffold41792 GLEAN promoter 92866 93865 0.99996 - . ID=CGI_10005638; scaffold41792 GLEAN mRNA 93085 109139 0.999934 - . ID=CGI_10005639; scaffold41792 GLEAN promoter 109140 110139 0.999934 - . ID=CGI_10005639; scaffold41792 GLEAN promoter 114241 115240 0.85397 + . ID=CGI_10005640; scaffold41792 GLEAN mRNA 115241 131912 0.85397 + . ID=CGI_10005640; scaffold41794 GLEAN promoter 2 1001 0.983774 + . ID=CGI_10005653; scaffold41794 GLEAN mRNA 1002 19409 0.983774 + . ID=CGI_10005653; scaffold41794 TRF Tandem_Repeat 22205 22232 56 + . . scaffold41794 TRF Tandem_Repeat 24512 24550 78 + . . scaffold41794 TRF Tandem_Repeat 46555 46585 62 + . . scaffold41794 WUBlastX DNA_Harbinger 47564 47995 218 - . . scaffold41794 WUBlastX LINE_L1 51547 51585 22 - . . scaffold41794 WUBlastX LINE_L1 51683 52114 24 - . . scaffold41794 WUBlastX LINE_L1 51755 52117 52 - . . scaffold41794 WUBlastX LINE_L1-Tx1 51836 52237 95 - . . scaffold41794 WUBlastX LINE_L1-Tx1 52266 53051 361 - . . scaffold41794 WUBlastX LINE_L1-Tx1 52287 53423 125 - . . scaffold41794 WUBlastX LINE_L1-Tx1 53371 53805 137 - . . scaffold41794 WUBlastX LINE_L1-Tx1 53539 53862 68 - . . scaffold41794 WUBlastX LINE_CR1 53750 53896 32 - . . scaffold41794 TRF Tandem_Repeat 89515 90561 827 + . . scaffold41794 WUBlastX DNA_hAT-Tip100 95706 95945 39 + . . scaffold41794 WUBlastX DNA_hAT-Tip100 95736 96017 28 + . . scaffold41794 GLEAN promoter 96061 97060 0.827583 + . ID=CGI_10005654; scaffold41794 GLEAN mRNA 97061 97510 0.827583 + . ID=CGI_10005654; scaffold41794 WUBlastX DNA_Maverick 97608 98003 252 + . . scaffold41794 WUBlastX DNA_Maverick 98197 98307 32 - . . scaffold41794 WUBlastX DNA_Maverick 98351 98551 48 - . . scaffold41794 TRF Tandem_Repeat 103226 103292 73 + . . scaffold41794 TRF Tandem_Repeat 104268 104354 95 + . . scaffold41794 TRF Tandem_Repeat 104441 104550 78 + . . scaffold41794 TRF Tandem_Repeat 104476 104563 97 + . . scaffold41794 TRF Tandem_Repeat 104560 104732 175 + . . scaffold41794 TRF Tandem_Repeat 106606 106684 54 + . . scaffold41794 WUBlastX LTR_Ngaro 122109 122597 56 - . . scaffold41794 WUBlastX LTR_Ngaro 122199 122612 286 - . . scaffold41794 WUBlastX LTR_Ngaro 122760 123323 63 - . . scaffold41794 WUBlastX LTR_Ngaro 122886 123569 117 - . . scaffold41794 WUBlastX LTR_Ngaro 122913 123362 132 - . . scaffold41798 TRF Tandem_Repeat 3223 3258 72 + . . scaffold41798 TRF Tandem_Repeat 28093 28201 53 + . . scaffold41798 TRF Tandem_Repeat 53596 53633 58 + . . scaffold41798 TRF Tandem_Repeat 59237 60042 794 + . . scaffold41798 TRF Tandem_Repeat 59239 60180 849 + . . scaffold41798 TRF Tandem_Repeat 59244 60125 937 + . . scaffold41798 TRF Tandem_Repeat 60017 60345 462 + . . scaffold41798 TRF Tandem_Repeat 68133 68181 53 + . . scaffold41798 TRF Tandem_Repeat 69166 69204 78 + . . scaffold41798 TRF Tandem_Repeat 80298 80331 59 + . . scaffold41798 TRF Tandem_Repeat 83156 84207 812 + . . scaffold41798 GLEAN promoter 85694 86693 0.970527 + . ID=CGI_10005656; scaffold41798 GLEAN mRNA 86694 87116 0.970527 + . ID=CGI_10005656; scaffold41798 TRF Tandem_Repeat 88389 88421 66 + . . scaffold41798 WUBlastX DNA_hAT-Ac 104447 104530 25 + . . scaffold41798 WUBlastX DNA_hAT-Ac 104638 104850 95 + . . scaffold41798 WUBlastX DNA_hAT-Ac 104733 105026 52 + . . scaffold41798 WUBlastX DNA_hAT-Ac 105029 105529 188 + . . scaffold41798 WUBlastX DNA_hAT-Ac 105543 105710 57 + . . scaffold41798 WUBlastX DNA_hAT-Ac 105962 106279 136 + . . scaffold41798 WUBlastX DNA_hAT-Ac 106010 106384 50 + . . scaffold41798 WUBlastX DNA_hAT-Ac 106034 106276 173 + . . scaffold41798 WUBlastX DNA_P 111648 111992 81 + . . scaffold41798 WUBlastX DNA_P 111651 111917 86 + . . scaffold41798 WUBlastX DNA_IS4EU 111654 111854 91 + . . scaffold41798 WUBlastX DNA_Kolobok 112574 113137 195 + . . scaffold41798 WUBlastX DNA_Kolobok 113242 113439 129 + . . scaffold41798 WUBlastX DNA_Kolobok 113506 113772 96 + . . scaffold41798 WUBlastX DNA_Kolobok 113524 113847 57 + . . scaffold41798 WUBlastX DNA_Kolobok 113856 114029 77 + . . scaffold41798 WUBlastX DNA_Kolobok 114109 114267 100 + . . scaffold41798 GLEAN mRNA 114675 115137 1 - . ID=CGI_10005657; scaffold41798 WUBlastX DNA_Kolobok 114684 114851 87 - . . scaffold41798 GLEAN promoter 115138 116137 1 - . ID=CGI_10005657; scaffold41798 TRF Tandem_Repeat 121287 122414 1497 + . . scaffold41798 GLEAN mRNA 123218 124499 1 - . ID=CGI_10005658; scaffold41798 GLEAN promoter 124500 125499 1 - . ID=CGI_10005658; scaffold41798 WUBlastX RC_Helitron 126038 126706 131 + . . scaffold41798 WUBlastX RC_Helitron 126107 126658 144 + . . scaffold41798 WUBlastX RC_Helitron 126146 126613 162 + . . scaffold41798 TRF Tandem_Repeat 128177 128322 103 + . . scaffold41798 TRF Tandem_Repeat 128232 128322 146 + . . scaffold418 GLEAN mRNA 4828 18090 0.701973 - . ID=CGI_10008667; scaffold418 GLEAN promoter 18091 19090 0.701973 - . ID=CGI_10008667; scaffold418 GLEAN promoter 18561 19560 0.69447 + . ID=CGI_10008668; scaffold418 GLEAN mRNA 19561 20268 0.69447 + . ID=CGI_10008668; scaffold418 GLEAN promoter 21940 22939 0.999351 + . ID=CGI_10008669; scaffold418 GLEAN mRNA 22940 34666 0.999351 + . ID=CGI_10008669; scaffold418 GLEAN promoter 40738 41737 0.987936 + . ID=CGI_10008670; scaffold418 GLEAN mRNA 41738 52710 0.987936 + . ID=CGI_10008670; scaffold418 GLEAN mRNA 57316 67991 1 - . ID=CGI_10008671; scaffold418 GLEAN promoter 67992 68991 1 - . ID=CGI_10008671; scaffold418 GLEAN mRNA 77201 77428 0.618241 - . ID=CGI_10008672; scaffold418 GLEAN promoter 77429 78428 0.618241 - . ID=CGI_10008672; scaffold418 GLEAN mRNA 158728 162077 0.734537 - . ID=CGI_10008673; scaffold418 GLEAN promoter 162078 163077 0.734537 - . ID=CGI_10008673; scaffold418 GLEAN promoter 164606 165605 0.999391 + . ID=CGI_10008674; scaffold418 GLEAN mRNA 165606 189419 0.999391 + . ID=CGI_10008674; scaffold418 GLEAN promoter 201191 202190 0.65113 + . ID=CGI_10008675; scaffold418 GLEAN mRNA 202191 209342 0.65113 + . ID=CGI_10008675; scaffold41806 GLEAN mRNA 391 2493 0.999723 - . ID=CGI_10005641; scaffold41806 WUBlastX LINE_RTE-X 1466 1795 52 + . . scaffold41806 WUBlastX LINE_RTE-X 1478 1738 52 + . . scaffold41806 GLEAN promoter 2494 3493 0.999723 - . ID=CGI_10005641; scaffold41806 TRF Tandem_Repeat 12642 12699 77 + . . scaffold41806 TRF Tandem_Repeat 14635 14693 118 + . . scaffold41806 TRF Tandem_Repeat 19500 19544 90 + . . scaffold41806 TRF Tandem_Repeat 20350 20405 112 + . . scaffold41806 TRF Tandem_Repeat 21418 21468 57 + . . scaffold41806 TRF Tandem_Repeat 28026 28102 145 + . . scaffold41806 GLEAN promoter 28141 29140 0.6496 + . ID=CGI_10005642; scaffold41806 GLEAN mRNA 29141 29479 0.6496 + . ID=CGI_10005642; scaffold41806 GLEAN promoter 31945 32944 0.999467 + . ID=CGI_10005643; scaffold41806 GLEAN mRNA 32945 33742 0.999467 + . ID=CGI_10005643; scaffold41806 TRF Tandem_Repeat 55494 55606 73 + . . scaffold41806 GLEAN promoter 59582 60581 0.773767 + . ID=CGI_10005644; scaffold41806 GLEAN mRNA 60582 60815 0.773767 + . ID=CGI_10005644; scaffold41806 WUBlastX LINE_RTE-X 63752 64162 28 + . . scaffold41806 WUBlastX LINE_RTE-X 63770 64066 66 + . . scaffold41806 WUBlastX LINE_RTE-X 63770 63985 93 + . . scaffold41806 WUBlastX LINE_RTE-X 64976 65119 21 + . . scaffold41806 WUBlastX LINE_RTE-X 65209 65532 90 + . . scaffold41806 WUBlastX LINE_RTE-X 65263 65532 116 + . . scaffold41806 WUBlastX LINE_RTE-X 65317 65580 99 + . . scaffold41806 WUBlastX LINE_RTE-X 65353 65634 33 + . . scaffold41806 TRF Tandem_Repeat 67385 67414 51 + . . scaffold41806 GLEAN mRNA 79076 103282 0.937542 - . ID=CGI_10005645; scaffold41806 TRF Tandem_Repeat 81254 81303 93 + . . scaffold41806 TRF Tandem_Repeat 84708 85075 92 + . . scaffold41806 TRF Tandem_Repeat 84747 85132 115 + . . scaffold41806 TRF Tandem_Repeat 84782 85005 79 + . . scaffold41806 TRF Tandem_Repeat 84811 84884 60 + . . scaffold41806 TRF Tandem_Repeat 84812 84880 52 + . . scaffold41806 TRF Tandem_Repeat 85428 86201 1047 + . . scaffold41806 TRF Tandem_Repeat 86313 86356 88 + . . scaffold41806 TRF Tandem_Repeat 91690 92444 939 + . . scaffold41806 TRF Tandem_Repeat 92459 92489 62 + . . scaffold41806 GLEAN promoter 103283 104282 0.937542 - . ID=CGI_10005645; scaffold41806 GLEAN mRNA 110424 124194 0.999364 - . ID=CGI_10005646; scaffold41806 GLEAN promoter 124195 125194 0.999364 - . ID=CGI_10005646; scaffold41806 TRF Tandem_Repeat 128891 128933 86 + . . scaffold41812 GLEAN mRNA 2053 4076 0.809944 - . ID=CGI_10005664; scaffold41812 GLEAN promoter 4077 5076 0.809944 - . ID=CGI_10005664; scaffold41812 GLEAN mRNA 11984 13995 0.803805 - . ID=CGI_10005665; scaffold41812 GLEAN promoter 13996 14995 0.803805 - . ID=CGI_10005665; scaffold41812 GLEAN mRNA 43958 74536 0.879835 - . ID=CGI_10005666; scaffold41812 GLEAN promoter 74537 75536 0.879835 - . ID=CGI_10005666; scaffold41812 GLEAN mRNA 77200 80691 1 - . ID=CGI_10005667; scaffold41812 GLEAN promoter 80692 81691 1 - . ID=CGI_10005667; scaffold41812 GLEAN mRNA 81861 86748 1 - . ID=CGI_10005668; scaffold41812 GLEAN promoter 86749 87748 1 - . ID=CGI_10005668; scaffold41812 GLEAN promoter 88877 89876 0.999974 + . ID=CGI_10005669; scaffold41812 GLEAN mRNA 89877 102645 0.999974 + . ID=CGI_10005669; scaffold41812 GLEAN promoter 103727 104726 0.99208 + . ID=CGI_10005670; scaffold41812 GLEAN mRNA 104727 121981 0.99208 + . ID=CGI_10005670; scaffold41812 GLEAN mRNA 129958 130326 0.6496 - . ID=CGI_10005671; scaffold41812 GLEAN promoter 130327 131326 0.6496 - . ID=CGI_10005671; scaffold41816 GLEAN mRNA 6032 28025 0.728522 - . ID=CGI_10005647; scaffold41816 TRF Tandem_Repeat 10519 10562 79 + . . scaffold41816 WUBlastX DNA_Academ 20415 20687 63 + . . scaffold41816 WUBlastX LTR_Ngaro 23906 24235 111 - . . scaffold41816 WUBlastX LTR_Ngaro 24223 24567 119 - . . scaffold41816 WUBlastX LTR_Ngaro 24995 25210 50 - . . scaffold41816 WUBlastX LTR_Ngaro 25040 25270 65 - . . scaffold41816 WUBlastX LTR_Ngaro 25070 25231 68 - . . scaffold41816 WUBlastX LTR_Ngaro 25246 25353 23 - . . scaffold41816 WUBlastX LTR_Ngaro 25246 25332 24 - . . scaffold41816 WUBlastX LTR_Ngaro 25377 25496 27 - . . scaffold41816 GLEAN promoter 28026 29025 0.728522 - . ID=CGI_10005647; scaffold41816 TRF Tandem_Repeat 37020 37083 101 + . . scaffold41816 TRF Tandem_Repeat 37020 37075 85 + . . scaffold41816 TRF Tandem_Repeat 37021 37079 55 + . . scaffold41816 TRF Tandem_Repeat 37029 37092 74 + . . scaffold41816 WUBlastX LINE_Penelope 41672 41857 31 - . . scaffold41816 GLEAN mRNA 42035 44186 0.811719 - . ID=CGI_10005648; scaffold41816 GLEAN promoter 44187 45186 0.811719 - . ID=CGI_10005648; scaffold41816 TRF Tandem_Repeat 46700 46737 76 + . . scaffold41816 GLEAN promoter 83334 84333 0.999542 + . ID=CGI_10005649; scaffold41816 TRF Tandem_Repeat 83786 83811 52 + . . scaffold41816 GLEAN mRNA 84334 89370 0.999542 + . ID=CGI_10005649; scaffold41816 WUBlastX LINE_RTE-X 85301 85873 74 - . . scaffold41816 WUBlastX LINE_RTE-X 85874 86014 38 - . . scaffold41816 WUBlastX LINE_RTE-X 85953 86408 185 - . . scaffold41816 WUBlastX LINE_RTE-X 86411 86608 98 - . . scaffold41816 WUBlastX LINE_RTE-X 86557 86922 154 - . . scaffold41816 WUBlastX LINE_RTE-BovB 86569 86988 29 - . . scaffold41816 WUBlastX LINE_RTE-X 86960 87229 25 - . . scaffold41816 WUBlastX LINE_RTE-X 86966 87373 21 - . . scaffold41816 WUBlastX LINE_CR1 87116 87289 26 - . . scaffold41816 WUBlastX LINE_RTE-X 87591 88391 150 - . . scaffold41816 WUBlastX LINE_L1 88537 88686 101 - . . scaffold41816 WUBlastX LINE_L2 88683 89183 149 - . . scaffold41816 WUBlastX LINE_L1 88710 89267 75 - . . scaffold41816 TRF Tandem_Repeat 90330 90355 52 + . . scaffold41816 TRF Tandem_Repeat 91050 91202 175 + . . scaffold41816 GLEAN mRNA 92420 98183 1 - . ID=CGI_10005650; scaffold41816 TRF Tandem_Repeat 95357 95453 149 + . . scaffold41816 TRF Tandem_Repeat 95492 96805 1449 + . . scaffold41816 TRF Tandem_Repeat 95511 96788 1631 + . . scaffold41816 GLEAN promoter 98184 99183 1 - . ID=CGI_10005650; scaffold41816 GLEAN mRNA 98517 110104 0.893372 - . ID=CGI_10005651; scaffold41816 GLEAN promoter 103545 104544 0.874598 + . ID=CGI_10005652; scaffold41816 GLEAN mRNA 104545 124671 0.874598 + . ID=CGI_10005652; scaffold41816 GLEAN promoter 110105 111104 0.893372 - . ID=CGI_10005651; scaffold41816 TRF Tandem_Repeat 127943 128160 145 + . . scaffold41824 GLEAN promoter 682 1681 0.99729 + . ID=CGI_10005707; scaffold41824 GLEAN mRNA 1682 11654 0.99729 + . ID=CGI_10005707; scaffold41824 TRF Tandem_Repeat 17904 18103 274 + . . scaffold41824 GLEAN mRNA 18136 51013 0.780965 - . ID=CGI_10005708; scaffold41824 TRF Tandem_Repeat 31460 31499 80 + . . scaffold41824 TRF Tandem_Repeat 37970 38104 67 + . . scaffold41824 TRF Tandem_Repeat 38021 38114 91 + . . scaffold41824 GLEAN promoter 51014 52013 0.780965 - . ID=CGI_10005708; scaffold41824 TRF Tandem_Repeat 52478 52533 112 + . . scaffold41824 WUBlastX LINE_RTE-X 58840 59163 41 - . . scaffold41824 WUBlastX LINE_RTE-X 58909 59220 88 - . . scaffold41824 WUBlastX LINE_RTE-X 58960 59169 91 - . . scaffold41824 GLEAN promoter 59874 60873 0.999676 + . ID=CGI_10005709; scaffold41824 TRF Tandem_Repeat 60341 60391 95 + . . scaffold41824 GLEAN mRNA 60874 70208 0.999676 + . ID=CGI_10005709; scaffold41824 GLEAN mRNA 65241 104767 0.128684 - . ID=CGI_10005710; scaffold41824 TRF Tandem_Repeat 94372 94420 98 + . . scaffold41824 GLEAN promoter 104768 105767 0.128684 - . ID=CGI_10005710; scaffold41824 TRF Tandem_Repeat 121877 121916 80 + . . scaffold41824 GLEAN mRNA 122329 122532 0.59015 - . ID=CGI_10005711; scaffold41824 GLEAN promoter 122533 123532 0.59015 - . ID=CGI_10005711; scaffold41824 GLEAN mRNA 126112 130432 0.544852 - . ID=CGI_10005712; scaffold41824 GLEAN promoter 130433 131432 0.544852 - . ID=CGI_10005712; scaffold41828 GLEAN mRNA 18916 30776 1 - . ID=CGI_10005672; scaffold41828 TRF Tandem_Repeat 19041 19074 68 + . . scaffold41828 WUBlastX LINE_RTE-X 20080 21039 292 - . . scaffold41828 GLEAN promoter 30432 31431 0.999415 + . ID=CGI_10005673; scaffold41828 GLEAN promoter 30777 31776 1 - . ID=CGI_10005672; scaffold41828 GLEAN mRNA 31432 32304 0.999415 + . ID=CGI_10005673; scaffold41828 TRF Tandem_Repeat 33594 33625 55 + . . scaffold41828 TRF Tandem_Repeat 33803 34912 1256 + . . scaffold41828 TRF Tandem_Repeat 33830 34810 1362 + . . scaffold41828 GLEAN mRNA 38928 71738 0.931608 - . ID=CGI_10005674; scaffold41828 GLEAN promoter 39407 40406 0.999647 + . ID=CGI_10005675; scaffold41828 GLEAN mRNA 40407 41268 0.999647 + . ID=CGI_10005675; scaffold41828 TRF Tandem_Repeat 61720 61922 258 + . . scaffold41828 TRF Tandem_Repeat 65527 65644 162 + . . scaffold41828 TRF Tandem_Repeat 69805 69852 96 + . . scaffold41828 TRF Tandem_Repeat 70973 71447 496 + . . scaffold41828 GLEAN promoter 71739 72738 0.931608 - . ID=CGI_10005674; scaffold41828 TRF Tandem_Repeat 71852 72072 268 + . . scaffold41828 WUBlastX LINE_RTE-BovB 72112 72216 43 + . . scaffold41828 GLEAN promoter 74490 75489 0.427943 + . ID=CGI_10005676; scaffold41828 GLEAN mRNA 75490 92080 0.427943 + . ID=CGI_10005676; scaffold41828 GLEAN mRNA 78109 78276 0.576671 - . ID=CGI_10005677; scaffold41828 GLEAN promoter 78277 79276 0.576671 - . ID=CGI_10005677; scaffold41828 TRF Tandem_Repeat 78322 78387 80 + . . scaffold41828 TRF Tandem_Repeat 86678 86713 65 + . . scaffold41828 TRF Tandem_Repeat 86824 86863 53 + . . scaffold41828 TRF Tandem_Repeat 87036 89535 2571 + . . scaffold41828 TRF Tandem_Repeat 87037 89535 2668 + . . scaffold41828 TRF Tandem_Repeat 87044 89507 2990 + . . scaffold41828 GLEAN mRNA 92887 93807 1 - . ID=CGI_10005678; scaffold41828 GLEAN promoter 93808 94807 1 - . ID=CGI_10005678; scaffold41828 TRF Tandem_Repeat 101971 102010 80 + . . scaffold41828 TRF Tandem_Repeat 109096 109136 82 + . . scaffold41828 TRF Tandem_Repeat 111481 111514 68 + . . scaffold41828 TRF Tandem_Repeat 112471 112495 50 + . . scaffold41828 GLEAN promoter 120553 121552 0.983301 + . ID=CGI_10005680; scaffold41828 GLEAN mRNA 121553 131906 0.983301 + . ID=CGI_10005680; scaffold41828 TRF Tandem_Repeat 131449 131563 131 + . . scaffold41832 GLEAN mRNA 342 2388 1 - . ID=CGI_10005713; scaffold41832 GLEAN promoter 1640 2639 1 + . ID=CGI_10005714; scaffold41832 GLEAN promoter 2389 3388 1 - . ID=CGI_10005713; scaffold41832 GLEAN mRNA 2640 14733 1 + . ID=CGI_10005714; scaffold41832 GLEAN mRNA 15889 42996 0.913043 - . ID=CGI_10005715; scaffold41832 GLEAN promoter 28035 29034 0.190975 + . ID=CGI_10005716; scaffold41832 GLEAN mRNA 29035 70053 0.190975 + . ID=CGI_10005716; scaffold41832 GLEAN promoter 42997 43996 0.913043 - . ID=CGI_10005715; scaffold41832 GLEAN mRNA 67447 70161 1 - . ID=CGI_10005717; scaffold41832 GLEAN promoter 70162 71161 1 - . ID=CGI_10005717; scaffold41832 GLEAN promoter 71074 72073 1 + . ID=CGI_10005718; scaffold41832 GLEAN mRNA 72074 80556 1 + . ID=CGI_10005718; scaffold41832 GLEAN mRNA 82940 85798 1 - . ID=CGI_10005719; scaffold41832 GLEAN promoter 85012 86011 1 + . ID=CGI_10005720; scaffold41832 GLEAN promoter 85799 86798 1 - . ID=CGI_10005719; scaffold41832 GLEAN mRNA 86012 96536 1 + . ID=CGI_10005720; scaffold41832 GLEAN mRNA 97392 101685 0.999675 - . ID=CGI_10005721; scaffold41832 GLEAN promoter 101686 102685 0.999675 - . ID=CGI_10005721; scaffold41832 GLEAN mRNA 112247 119630 0.993331 - . ID=CGI_10005722; scaffold41832 GLEAN promoter 118962 119961 0.999676 + . ID=CGI_10005723; scaffold41832 GLEAN promoter 119631 120630 0.993331 - . ID=CGI_10005722; scaffold41832 GLEAN mRNA 119962 124036 0.999676 + . ID=CGI_10005723; scaffold41832 GLEAN mRNA 125008 127125 0.558105 - . ID=CGI_10005724; scaffold41832 GLEAN promoter 127126 128125 0.558105 - . ID=CGI_10005724; scaffold41832 GLEAN mRNA 131118 134480 1 - . ID=CGI_10005725; scaffold41832 GLEAN promoter 134481 134533 1 - . ID=CGI_10005725; scaffold41834 TRF Tandem_Repeat 652 690 78 + . . scaffold41834 WUBlastX DNA_Maverick 41148 41264 36 - . . scaffold41834 WUBlastX DNA_Maverick 41448 42047 42 - . . scaffold41834 WUBlastX DNA_Maverick 41775 42050 43 - . . scaffold41834 WUBlastX DNA_Maverick 42044 42166 45 - . . scaffold41834 WUBlastX DNA_Maverick 42172 42357 77 - . . scaffold41834 WUBlastX DNA_Maverick 42172 42324 83 - . . scaffold41834 TRF Tandem_Repeat 45409 45435 54 + . . scaffold41834 WUBlastX RC_Helitron 45624 46406 78 + . . scaffold41834 WUBlastX RC_Helitron 45789 46640 148 + . . scaffold41834 WUBlastX RC_Helitron 46479 47000 152 + . . scaffold41834 WUBlastX RC_Helitron 46737 47066 105 + . . scaffold41834 GLEAN promoter 47075 48074 0.346565 + . ID=CGI_10005704; scaffold41834 GLEAN mRNA 48075 59157 0.346565 + . ID=CGI_10005704; scaffold41834 WUBlastX DNA_P 49990 51777 158 - . . scaffold41834 WUBlastX DNA_P 50050 51366 225 - . . scaffold41834 GLEAN promoter 66458 67457 0.396652 + . ID=CGI_10005705; scaffold41834 GLEAN mRNA 67458 75715 0.396652 + . ID=CGI_10005705; scaffold41834 WUBlastX LINE_CR1 75469 75681 27 + . . scaffold41834 GLEAN mRNA 80651 90221 0.99319 - . ID=CGI_10005706; scaffold41834 GLEAN promoter 90222 91221 0.99319 - . ID=CGI_10005706; scaffold41834 WUBlastX DNA_En-Spm 91477 92499 44 + . . scaffold41834 WUBlastX DNA_En-Spm 91651 92721 292 + . . scaffold41834 WUBlastX DNA_En-Spm 92125 93537 433 + . . scaffold41834 TRF Tandem_Repeat 98370 98418 89 + . . scaffold41834 TRF Tandem_Repeat 110116 110163 96 + . . scaffold41834 WUBlastX LINE_RTE-X 114362 114580 61 + . . scaffold41834 WUBlastX LINE_RTE-X 114410 114586 74 + . . scaffold41834 WUBlastX LINE_RTE-X 114410 114637 54 + . . scaffold41834 WUBlastX LINE_RTE-X 114598 114861 41 + . . scaffold41834 WUBlastX LINE_RTE-X 116023 116322 65 + . . scaffold41834 WUBlastX LINE_RTE-X 116143 116319 116 + . . scaffold41834 WUBlastX LINE_RTE-X 116143 116439 91 + . . scaffold41834 WUBlastX LTR_Foamy 117116 117163 21 + . . scaffold41834 WUBlastX LTR_Gypsy 118008 119108 649 + . . scaffold41834 WUBlastX LTR_Gypsy 118035 118952 758 + . . scaffold41834 WUBlastX RC_Helitron 120815 121723 21 + . . scaffold41834 WUBlastX RC_Helitron 121001 121666 116 + . . scaffold41834 WUBlastX RC_Helitron 121781 122512 336 + . . scaffold41834 WUBlastX RC_Helitron 123670 124986 905 + . . scaffold41834 WUBlastX RC_Helitron 125181 126122 571 + . . scaffold41834 WUBlastX DNA_TcMar-Tc2 126422 126640 68 - . . scaffold41834 WUBlastX DNA_TcMar-Tc2 126523 126846 65 - . . scaffold41834 WUBlastX RC_Helitron 127078 127536 245 + . . scaffold41834 WUBlastX RC_Helitron 127168 127680 336 + . . scaffold41834 WUBlastX RC_Helitron 127720 128313 369 + . . scaffold41834 WUBlastX RC_Helitron 128319 129452 325 + . . scaffold41834 WUBlastX RC_Helitron 129449 129772 56 + . . scaffold41834 WUBlastX LINE_L2 129777 130049 57 + . . scaffold41834 WUBlastX RC_Helitron 129825 130049 72 + . . scaffold41834 WUBlastX RC_Helitron 131310 131573 34 + . . scaffold41852 WUBlastX LINE_L1-Tx1 762 1019 95 + . . scaffold41852 WUBlastX LINE_L1-Tx1 1007 1087 68 + . . scaffold41852 WUBlastX LINE_L1-Tx1 1063 1398 181 + . . scaffold41852 WUBlastX LINE_L1 1081 1467 161 + . . scaffold41852 WUBlastX LINE_L1 1087 1539 60 + . . scaffold41852 WUBlastX LINE_L1 1401 1640 46 + . . scaffold41852 WUBlastX LINE_L1 1761 1862 31 + . . scaffold41852 WUBlastX LINE_L1-Tx1 2216 2326 29 + . . scaffold41852 GLEAN promoter 8533 9532 0.98936 + . ID=CGI_10005726; scaffold41852 GLEAN mRNA 9533 19014 0.98936 + . ID=CGI_10005726; scaffold41852 GLEAN promoter 18888 19887 1 + . ID=CGI_10005727; scaffold41852 GLEAN mRNA 19888 21444 1 + . ID=CGI_10005727; scaffold41852 GLEAN promoter 29754 30753 0.999996 + . ID=CGI_10005728; scaffold41852 GLEAN mRNA 30754 32295 0.999996 + . ID=CGI_10005728; scaffold41852 GLEAN promoter 31735 32734 0.737892 + . ID=CGI_10005729; scaffold41852 GLEAN mRNA 32735 47216 0.737892 + . ID=CGI_10005729; scaffold41852 TRF Tandem_Repeat 32953 32987 70 + . . scaffold41852 TRF Tandem_Repeat 39765 39814 57 + . . scaffold41852 GLEAN mRNA 53522 60625 1 - . ID=CGI_10005730; scaffold41852 GLEAN promoter 60626 61625 1 - . ID=CGI_10005730; scaffold41852 GLEAN mRNA 64604 84126 0.728198 - . ID=CGI_10005731; scaffold41852 TRF Tandem_Repeat 67764 67830 125 + . . scaffold41852 TRF Tandem_Repeat 74361 74396 72 + . . scaffold41852 TRF Tandem_Repeat 81941 81980 73 + . . scaffold41852 GLEAN promoter 84127 85126 0.728198 - . ID=CGI_10005731; scaffold41852 GLEAN mRNA 85393 88650 0.999357 - . ID=CGI_10005732; scaffold41852 GLEAN promoter 88651 89650 0.999357 - . ID=CGI_10005732; scaffold41852 GLEAN mRNA 91017 94023 1 - . ID=CGI_10005733; scaffold41852 GLEAN promoter 94024 95023 1 - . ID=CGI_10005733; scaffold41852 TRF Tandem_Repeat 96952 97007 112 + . . scaffold41852 TRF Tandem_Repeat 98419 98456 76 + . . scaffold41852 GLEAN promoter 98943 99942 1 + . ID=CGI_10005734; scaffold41852 GLEAN mRNA 99943 105635 1 + . ID=CGI_10005734; scaffold41852 GLEAN promoter 106517 107516 0.999855 + . ID=CGI_10005735; scaffold41852 GLEAN mRNA 107517 110100 0.999855 + . ID=CGI_10005735; scaffold41852 WUBlastX DNA_Harbinger 109091 109294 98 - . . scaffold41852 WUBlastX DNA_Harbinger 109290 109565 179 - . . scaffold41852 WUBlastX DNA_Harbinger 110353 110574 43 - . . scaffold41852 WUBlastX DNA_Harbinger 110401 110580 50 - . . scaffold41852 TRF Tandem_Repeat 116770 116811 66 + . . scaffold41852 GLEAN mRNA 118329 119510 0.997723 - . ID=CGI_10005736; scaffold41852 GLEAN promoter 119511 120510 0.997723 - . ID=CGI_10005736; scaffold41852 TRF Tandem_Repeat 127874 127914 82 + . . scaffold41858 GLEAN promoter 1 769 0.999511 + . ID=CGI_10005755; scaffold41858 GLEAN mRNA 770 6937 0.999511 + . ID=CGI_10005755; scaffold41858 GLEAN promoter 6125 7124 0.999673 + . ID=CGI_10005756; scaffold41858 GLEAN mRNA 7125 8053 0.999673 + . ID=CGI_10005756; scaffold41858 GLEAN mRNA 10032 12105 0.453278 - . ID=CGI_10005757; scaffold41858 GLEAN promoter 12106 13105 0.453278 - . ID=CGI_10005757; scaffold41858 GLEAN promoter 13100 14099 0.591942 + . ID=CGI_10005758; scaffold41858 TRF Tandem_Repeat 13446 13485 64 + . . scaffold41858 GLEAN mRNA 14100 16103 0.591942 + . ID=CGI_10005758; scaffold41858 GLEAN mRNA 16501 17857 0.448972 - . ID=CGI_10005759; scaffold41858 TRF Tandem_Repeat 17094 17152 109 + . . scaffold41858 GLEAN promoter 17858 18857 0.448972 - . ID=CGI_10005759; scaffold41858 GLEAN mRNA 19433 22053 0.747151 - . ID=CGI_10005760; scaffold41858 TRF Tandem_Repeat 20142 20200 118 + . . scaffold41858 GLEAN promoter 22054 23053 0.747151 - . ID=CGI_10005760; scaffold41858 TRF Tandem_Repeat 22520 22632 153 + . . scaffold41858 GLEAN promoter 23201 24200 0.998077 + . ID=CGI_10005761; scaffold41858 GLEAN mRNA 24201 25448 0.998077 + . ID=CGI_10005761; scaffold41858 GLEAN mRNA 27922 31645 0.97912 - . ID=CGI_10005762; scaffold41858 GLEAN promoter 31076 32075 1 + . ID=CGI_10005763; scaffold41858 GLEAN promoter 31646 32645 0.97912 - . ID=CGI_10005762; scaffold41858 GLEAN mRNA 32076 43760 1 + . ID=CGI_10005763; scaffold41858 TRF Tandem_Repeat 39073 39206 155 + . . scaffold41858 GLEAN promoter 43866 44865 1 + . ID=CGI_10005764; scaffold41858 GLEAN mRNA 44866 48067 1 + . ID=CGI_10005764; scaffold41858 GLEAN mRNA 51958 65356 0.999486 - . ID=CGI_10005765; scaffold41858 TRF Tandem_Repeat 62450 62527 156 + . . scaffold41858 GLEAN promoter 65357 66356 0.999486 - . ID=CGI_10005765; scaffold41858 GLEAN mRNA 75537 76559 0.991246 - . ID=CGI_10005766; scaffold41858 GLEAN promoter 76560 77559 0.991246 - . ID=CGI_10005766; scaffold41858 GLEAN promoter 76593 77592 0.999048 + . ID=CGI_10005767; scaffold41858 GLEAN mRNA 77593 78171 0.999048 + . ID=CGI_10005767; scaffold41858 GLEAN mRNA 78438 94955 0.999356 - . ID=CGI_10005768; scaffold41858 TRF Tandem_Repeat 88214 88282 129 + . . scaffold41858 WUBlastX DNA_TcMar-Tc1 90875 91222 119 + . . scaffold41858 WUBlastX DNA_TcMar-Tc1 90935 91213 131 + . . scaffold41858 GLEAN promoter 94956 95955 0.999356 - . ID=CGI_10005768; scaffold41858 TRF Tandem_Repeat 95336 95389 108 + . . scaffold41858 GLEAN promoter 96121 97120 0.998504 + . ID=CGI_10005769; scaffold41858 GLEAN mRNA 97121 102092 0.998504 + . ID=CGI_10005769; scaffold41858 TRF Tandem_Repeat 101233 101808 1073 + . . scaffold41858 GLEAN promoter 106447 107446 1 + . ID=CGI_10005770; scaffold41858 GLEAN mRNA 107447 123979 1 + . ID=CGI_10005770; scaffold41858 WUBlastX LINE_CR1 108590 110326 206 + . . scaffold41858 WUBlastX LINE_RTE-X 108923 110920 761 + . . scaffold41858 WUBlastX LINE_RTE-X 110345 111106 147 + . . scaffold41858 TRF Tandem_Repeat 112790 112833 61 + . . scaffold41858 TRF Tandem_Repeat 113915 113972 116 + . . scaffold41858 TRF Tandem_Repeat 120887 121161 288 + . . scaffold41858 GLEAN mRNA 127918 133279 1 - . ID=CGI_10005771; scaffold41858 GLEAN promoter 133280 134279 1 - . ID=CGI_10005771; scaffold41876 GLEAN promoter 34825 35824 0.999991 + . ID=CGI_10005696; scaffold41876 GLEAN mRNA 35825 37444 0.999991 + . ID=CGI_10005696; scaffold41876 GLEAN mRNA 39316 39555 0.998504 - . ID=CGI_10005697; scaffold41876 GLEAN promoter 39556 40555 0.998504 - . ID=CGI_10005697; scaffold41876 GLEAN promoter 40116 41115 0.592785 + . ID=CGI_10005698; scaffold41876 GLEAN mRNA 41116 61108 0.592785 + . ID=CGI_10005698; scaffold41876 GLEAN promoter 71239 72238 0.999989 + . ID=CGI_10005699; scaffold41876 GLEAN mRNA 72239 81109 0.999989 + . ID=CGI_10005699; scaffold41876 GLEAN promoter 81690 82689 0.999989 + . ID=CGI_10005700; scaffold41876 GLEAN mRNA 82690 89273 0.999989 + . ID=CGI_10005700; scaffold41876 GLEAN promoter 91626 92625 1 + . ID=CGI_10005701; scaffold41876 GLEAN mRNA 92626 100428 1 + . ID=CGI_10005701; scaffold41876 GLEAN promoter 102258 103257 0.999949 + . ID=CGI_10005702; scaffold41876 GLEAN mRNA 103258 114122 0.999949 + . ID=CGI_10005702; scaffold41876 GLEAN mRNA 120030 128927 0.972832 - . ID=CGI_10005703; scaffold41876 GLEAN promoter 128928 129927 0.972832 - . ID=CGI_10005703; scaffold41882 TRF Tandem_Repeat 79003 79052 57 + . . scaffold41882 WUBlastX LTR_Gypsy 79933 80457 48 - . . scaffold41882 WUBlastX LTR_Gypsy 80017 80457 106 - . . scaffold41882 GLEAN mRNA 80459 80776 0.999372 - . ID=CGI_10005782; scaffold41882 GLEAN promoter 80777 81776 0.999372 - . ID=CGI_10005782; scaffold41882 WUBlastX LTR_Gypsy 81145 81378 92 - . . scaffold41882 TRF Tandem_Repeat 84363 84393 62 + . . scaffold41882 TRF Tandem_Repeat 88329 88680 381 + . . scaffold41882 TRF Tandem_Repeat 88841 88900 120 + . . scaffold41882 TRF Tandem_Repeat 89961 90000 55 + . . scaffold41882 WUBlastX LINE_L2 90625 90792 39 + . . scaffold41882 TRF Tandem_Repeat 91417 91447 53 + . . scaffold41882 WUBlastX LTR_Gypsy 130615 131130 99 - . . scaffold41882 WUBlastX LTR_Gypsy 130702 131250 100 - . . scaffold41882 WUBlastX LTR_Gypsy 130702 131145 201 - . . scaffold41882 WUBlastX LTR_Gypsy-Cigr 130834 131148 208 - . . scaffold41882 WUBlastX LTR_Gypsy 131177 131302 47 - . . scaffold41882 WUBlastX LTR_Gypsy 131298 131687 76 - . . scaffold41882 WUBlastX LTR_Gypsy 131340 131555 96 - . . scaffold41882 WUBlastX LTR_Gypsy 132536 132862 63 - . . scaffold41882 WUBlastX LTR_Gypsy 132591 132791 72 - . . scaffold41882 WUBlastX LTR_Gypsy 132603 132746 74 - . . scaffold41882 WUBlastX LTR_Gypsy 132737 132847 71 - . . scaffold41882 WUBlastX LINE_L1-Tx1 136000 136344 107 - . . scaffold41882 WUBlastX LINE_L1 136090 136341 108 - . . scaffold41884 GLEAN mRNA 14297 21221 0.688165 - . ID=CGI_10005778; scaffold41884 GLEAN promoter 21222 22221 0.688165 - . ID=CGI_10005778; scaffold41884 TRF Tandem_Repeat 27208 27250 86 + . . scaffold41884 TRF Tandem_Repeat 28485 28520 72 + . . scaffold41884 TRF Tandem_Repeat 28849 28889 73 + . . scaffold41884 GLEAN promoter 29101 30100 0.994562 + . ID=CGI_10005779; scaffold41884 GLEAN mRNA 30101 44579 0.994562 + . ID=CGI_10005779; scaffold41884 TRF Tandem_Repeat 39191 39244 108 + . . scaffold41884 GLEAN promoter 49798 50797 0.351321 + . ID=CGI_10005780; scaffold41884 GLEAN mRNA 50798 64593 0.351321 + . ID=CGI_10005780; scaffold41884 WUBlastX RC_Helitron 51652 52116 81 + . . scaffold41884 TRF Tandem_Repeat 52282 52790 790 + . . scaffold41884 TRF Tandem_Repeat 56837 56887 102 + . . scaffold41884 WUBlastX LINE_RTE-X 57940 58461 111 + . . scaffold41884 WUBlastX LINE_RTE-X 57949 58347 125 + . . scaffold41884 TRF Tandem_Repeat 59355 59441 174 + . . scaffold41884 TRF Tandem_Repeat 64621 64674 108 + . . scaffold41884 WUBlastX LTR_Ngaro 69350 70321 206 - . . scaffold41884 WUBlastX LTR_Ngaro 70231 70668 219 - . . scaffold41884 WUBlastX LTR_Ngaro 70689 71150 282 - . . scaffold41884 WUBlastX LTR_Ngaro 71143 71307 91 - . . scaffold41884 WUBlastX LTR_Ngaro 71683 71802 81 - . . scaffold41884 WUBlastX LTR_Ngaro 71796 72095 94 - . . scaffold41884 WUBlastX LTR_Ngaro 71814 72563 34 - . . scaffold41884 WUBlastX DNA_IS 74424 74636 314 - . . scaffold41884 WUBlastX DNA_IS 74614 75033 627 - . . scaffold41884 TRF Tandem_Repeat 79987 80056 140 + . . scaffold41884 TRF Tandem_Repeat 80246 80288 86 + . . scaffold41884 TRF Tandem_Repeat 82723 82761 78 + . . scaffold41884 TRF Tandem_Repeat 86268 86312 81 + . . scaffold41884 TRF Tandem_Repeat 87253 87352 173 + . . scaffold41884 WUBlastX LINE_L1-Tx1 95191 95823 97 + . . scaffold41884 WUBlastX LINE_L1 95332 95844 111 + . . scaffold41884 WUBlastX LINE_L1-Tx1 95398 95826 146 + . . scaffold41884 TRF Tandem_Repeat 101504 102583 1080 + . . scaffold41884 TRF Tandem_Repeat 106954 106989 72 + . . scaffold41884 TRF Tandem_Repeat 108044 108742 1060 + . . scaffold41884 GLEAN promoter 109202 110201 0.990855 + . ID=CGI_10005781; scaffold41884 GLEAN mRNA 110202 110775 0.990855 + . ID=CGI_10005781; scaffold41884 TRF Tandem_Repeat 112453 113415 1295 + . . scaffold41884 TRF Tandem_Repeat 115415 115454 62 + . . scaffold41884 TRF Tandem_Repeat 120105 120192 77 + . . scaffold41884 WUBlastX LTR_DIRS 124881 125780 379 - . . scaffold41884 WUBlastX LTR_DIRS 125672 127654 778 - . . scaffold41884 WUBlastX LTR_DIRS 126014 127759 907 - . . scaffold41884 WUBlastX LTR_Gypsy 127022 127948 32 - . . scaffold41884 WUBlastX LTR_Gypsy 127938 128135 26 - . . scaffold41890 GLEAN promoter 1 1000 1 + . ID=CGI_10005795; scaffold41890 GLEAN mRNA 1001 22668 1 + . ID=CGI_10005795; scaffold41890 GLEAN mRNA 22909 66044 0.901301 - . ID=CGI_10005796; scaffold41890 GLEAN promoter 66045 67044 0.901301 - . ID=CGI_10005796; scaffold41890 GLEAN mRNA 87799 91036 0.946795 - . ID=CGI_10005797; scaffold41890 GLEAN promoter 91037 92036 0.946795 - . ID=CGI_10005797; scaffold41890 GLEAN mRNA 101523 105317 0.999959 - . ID=CGI_10005798; scaffold41890 GLEAN promoter 105318 106317 0.999959 - . ID=CGI_10005798; scaffold41890 GLEAN mRNA 115882 117612 0.965908 - . ID=CGI_10005799; scaffold41890 GLEAN promoter 117613 118612 0.965908 - . ID=CGI_10005799; scaffold41890 GLEAN mRNA 129257 130447 0.999676 - . ID=CGI_10005800; scaffold41890 GLEAN promoter 130448 131447 0.999676 - . ID=CGI_10005800; scaffold41896 GLEAN mRNA 253 10977 1 - . ID=CGI_10005801; scaffold41896 TRF Tandem_Repeat 8836 8899 96 + . . scaffold41896 GLEAN promoter 10978 11977 1 - . ID=CGI_10005801; scaffold41896 TRF Tandem_Repeat 17284 17354 70 + . . scaffold41896 TRF Tandem_Repeat 20363 20395 57 + . . scaffold41896 TRF Tandem_Repeat 22983 23059 95 + . . scaffold41896 GLEAN promoter 23752 24751 0.995312 + . ID=CGI_10005802; scaffold41896 GLEAN mRNA 24752 25099 0.995312 + . ID=CGI_10005802; scaffold41896 TRF Tandem_Repeat 26185 27183 1182 + . . scaffold41896 TRF Tandem_Repeat 26185 27183 1020 + . . scaffold41896 WUBlastX LINE_L2 27878 28336 57 + . . scaffold41896 WUBlastX LINE_L2 28103 28336 71 + . . scaffold41896 WUBlastX LINE_L2 28103 28279 72 + . . scaffold41896 WUBlastX LINE_L2 28356 29618 332 + . . scaffold41896 WUBlastX LINE_L2 29515 30369 349 + . . scaffold41896 WUBlastX LINE_L2 29659 30378 418 + . . scaffold41896 WUBlastX LINE_L2 30372 30614 174 + . . scaffold41896 WUBlastX LINE_CR1-L2 30620 30835 28 + . . scaffold41896 WUBlastX LINE_L2 30629 30808 109 + . . scaffold41896 TRF Tandem_Repeat 33238 33502 307 + . . scaffold41896 GLEAN promoter 34198 35197 0.999984 + . ID=CGI_10005803; scaffold41896 GLEAN mRNA 35198 36871 0.999984 + . ID=CGI_10005803; scaffold41896 GLEAN mRNA 36497 42253 0.998199 - . ID=CGI_10005804; scaffold41896 GLEAN promoter 42254 43253 0.998199 - . ID=CGI_10005804; scaffold41896 GLEAN mRNA 45464 52100 0.998223 - . ID=CGI_10005805; scaffold41896 GLEAN promoter 51539 52538 0.999375 + . ID=CGI_10005806; scaffold41896 GLEAN promoter 52101 53100 0.998223 - . ID=CGI_10005805; scaffold41896 GLEAN mRNA 52539 54547 0.999375 + . ID=CGI_10005806; scaffold41896 TRF Tandem_Repeat 52896 52923 56 + . . scaffold41896 GLEAN mRNA 60139 67049 0.961488 - . ID=CGI_10005807; scaffold41896 GLEAN promoter 67050 68049 0.961488 - . ID=CGI_10005807; scaffold41896 TRF Tandem_Repeat 67217 67241 50 + . . scaffold41896 GLEAN promoter 68116 69115 0.937542 + . ID=CGI_10005808; scaffold41896 GLEAN mRNA 69116 75969 0.937542 + . ID=CGI_10005808; scaffold41896 GLEAN mRNA 80143 84276 1 - . ID=CGI_10005809; scaffold41896 TRF Tandem_Repeat 81265 81594 552 + . . scaffold41896 TRF Tandem_Repeat 81847 81887 82 + . . scaffold41896 GLEAN promoter 84277 85276 1 - . ID=CGI_10005809; scaffold41896 GLEAN mRNA 88578 89912 0.996754 - . ID=CGI_10005810; scaffold41896 GLEAN promoter 89048 90047 0.675324 + . ID=CGI_10005811; scaffold41896 GLEAN promoter 89913 90912 0.996754 - . ID=CGI_10005810; scaffold41896 GLEAN mRNA 90048 111717 0.675324 + . ID=CGI_10005811; scaffold41896 TRF Tandem_Repeat 91889 91927 78 + . . scaffold41896 TRF Tandem_Repeat 93851 93894 88 + . . scaffold41896 TRF Tandem_Repeat 96760 96794 70 + . . scaffold41896 GLEAN mRNA 97960 108685 0.996281 - . ID=CGI_10005812; scaffold41896 GLEAN promoter 108686 109685 0.996281 - . ID=CGI_10005812; scaffold41896 GLEAN mRNA 116913 123369 1 - . ID=CGI_10005813; scaffold41896 GLEAN promoter 123370 124369 1 - . ID=CGI_10005813; scaffold41896 GLEAN promoter 126319 127318 1 + . ID=CGI_10005814; scaffold41896 GLEAN mRNA 127319 128801 1 + . ID=CGI_10005814; scaffold41896 TRF Tandem_Repeat 132381 132418 60 + . . scaffold41896 TRF Tandem_Repeat 132531 132572 66 + . . scaffold41898 WUBlastX DNA_IS4EU 739 1380 232 - . . scaffold41898 GLEAN promoter 759 1758 1 + . ID=CGI_10005830; scaffold41898 GLEAN mRNA 1759 2697 1 + . ID=CGI_10005830; scaffold41898 WUBlastX DNA_IS4EU 1777 2802 334 + . . scaffold41898 WUBlastX DNA_Kolobok-IS4 2008 2796 385 + . . scaffold41898 WUBlastX DNA_hAT-Tip100 13720 14085 67 - . . scaffold41898 TRF Tandem_Repeat 33211 33239 58 + . . scaffold41898 TRF Tandem_Repeat 35659 36445 1168 + . . scaffold41898 TRF Tandem_Repeat 42413 42457 54 + . . scaffold41898 GLEAN promoter 43808 44807 0.719283 + . ID=CGI_10005831; scaffold41898 GLEAN mRNA 44808 51724 0.719283 + . ID=CGI_10005831; scaffold41898 WUBlastX LTR_Gypsy 62431 63477 385 - . . scaffold41898 WUBlastX LTR_Gypsy 62584 63471 622 - . . scaffold41898 WUBlastX LTR_Gypsy 63413 63610 93 - . . scaffold41898 WUBlastX LTR_Gypsy 63594 64394 741 - . . scaffold41898 WUBlastX LTR_Gypsy 64392 64814 403 - . . scaffold41898 WUBlastX LTR_Gypsy 64834 65913 503 - . . scaffold41898 WUBlastX LTR_Gypsy 65904 66017 53 - . . scaffold41898 TRF Tandem_Repeat 70673 70706 68 + . . scaffold41898 TRF Tandem_Repeat 78496 78521 52 + . . scaffold41898 TRF Tandem_Repeat 79462 79493 64 + . . scaffold41898 WUBlastX LINE_Penelope 93884 95410 542 + . . scaffold41898 WUBlastX LINE_Penelope 93884 95680 407 + . . scaffold41898 GLEAN mRNA 97771 99228 0.999846 - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 97951 98169 33 - . . scaffold41898 WUBlastX LTR_Gypsy 98086 98208 33 - . . scaffold41898 WUBlastX LTR_Gypsy 98395 98646 23 - . . scaffold41898 WUBlastX LTR_Gypsy 98452 99522 230 - . . scaffold41898 WUBlastX LTR_Gypsy 98848 99549 243 - . . scaffold41898 WUBlastX LTR_Gypsy 99037 99657 68 - . . scaffold41898 GLEAN promoter 99229 100228 0.999846 - . ID=CGI_10005832; scaffold41898 WUBlastX LTR_Gypsy 101382 102053 115 + . . scaffold41898 WUBlastX LTR_Gypsy 101496 102053 156 + . . scaffold41898 WUBlastX LTR_Gypsy 101706 102380 85 + . . scaffold41898 WUBlastX LTR_Gypsy-Cigr 101706 102050 169 + . . scaffold41898 WUBlastX LTR_Gypsy-Cigr 101706 102137 138 + . . scaffold41898 WUBlastX LTR_Gypsy 102285 102449 25 + . . scaffold41898 WUBlastX LTR_Gypsy 102285 102401 62 + . . scaffold41898 TRF Tandem_Repeat 103990 104018 58 + . . scaffold41898 TRF Tandem_Repeat 113123 113184 124 + . . scaffold41898 TRF Tandem_Repeat 119083 119133 102 + . . scaffold41898 WUBlastX DNA_TcMar-Fot1 120728 121021 64 - . . scaffold41898 WUBlastX DNA_TcMar-Fot1 120830 121021 74 - . . scaffold41898 WUBlastX DNA_TcMar-Fot1 121032 121412 182 - . . scaffold41898 WUBlastX DNA_TcMar-Fot1 121412 122089 123 - . . scaffold41898 GLEAN mRNA 125743 131749 0.994311 - . ID=CGI_10005833; scaffold41898 GLEAN promoter 131750 132749 0.994311 - . ID=CGI_10005833; scaffold419 GLEAN promoter 3431 4430 0.920044 + . ID=CGI_10028317; scaffold419 GLEAN mRNA 4431 7188 0.920044 + . ID=CGI_10028317; scaffold419 WUBlastX DNA_Sola 33204 33563 86 + . . scaffold419 WUBlastX DNA_Sola 33306 33662 86 + . . scaffold419 TRF Tandem_Repeat 37878 37911 52 + . . scaffold419 GLEAN promoter 38110 39109 0.992133 + . ID=CGI_10028318; scaffold419 GLEAN mRNA 39110 43712 0.992133 + . ID=CGI_10028318; scaffold419 WUBlastX DNA_PiggyBac 39605 39943 113 + . . scaffold419 WUBlastX DNA_PiggyBac 39656 39910 129 + . . scaffold419 WUBlastX DNA_PiggyBac 39924 39983 39 + . . scaffold419 TRF Tandem_Repeat 45553 45609 114 + . . scaffold419 GLEAN promoter 45988 46987 0.999992 + . ID=CGI_10028319; scaffold419 TRF Tandem_Repeat 46775 46820 92 + . . scaffold419 GLEAN mRNA 46988 49900 0.999992 + . ID=CGI_10028319; scaffold419 WUBlastX LINE_RTE-X 47281 47496 26 - . . scaffold419 WUBlastX LINE_RTE-X 47463 48578 81 - . . scaffold419 WUBlastX LINE_RTE-X 47709 48578 84 - . . scaffold419 WUBlastX LINE_CR1 47959 48150 86 - . . scaffold419 WUBlastX LINE_Jockey 48228 48491 96 - . . scaffold419 WUBlastX LINE_I 48237 48638 85 - . . scaffold419 WUBlastX LINE_Proto2 48623 49672 96 - . . scaffold419 GLEAN mRNA 67952 94978 0.992945 - . ID=CGI_10028320; scaffold419 TRF Tandem_Repeat 91741 91773 66 + . . scaffold419 GLEAN promoter 94979 95978 0.992945 - . ID=CGI_10028320; scaffold419 GLEAN mRNA 95887 96271 0.531608 - . ID=CGI_10028321; scaffold419 GLEAN promoter 96272 97271 0.531608 - . ID=CGI_10028321; scaffold419 TRF Tandem_Repeat 100616 100659 88 + . . scaffold419 TRF Tandem_Repeat 123239 125089 2695 + . . scaffold419 GLEAN mRNA 136685 137870 1 - . ID=CGI_10028323; scaffold419 GLEAN promoter 137871 138870 1 - . ID=CGI_10028323; scaffold419 TRF Tandem_Repeat 139600 139665 123 + . . scaffold419 TRF Tandem_Repeat 144369 144413 90 + . . scaffold419 TRF Tandem_Repeat 148567 149380 828 + . . scaffold419 GLEAN promoter 160627 161626 1 + . ID=CGI_10028324; scaffold419 GLEAN mRNA 161627 165990 1 + . ID=CGI_10028324; scaffold419 GLEAN promoter 165105 166104 1 + . ID=CGI_10028325; scaffold419 GLEAN mRNA 166105 168982 1 + . ID=CGI_10028325; scaffold419 GLEAN mRNA 170982 172292 0.999572 - . ID=CGI_10028326; scaffold419 GLEAN promoter 172293 173292 0.999572 - . ID=CGI_10028326; scaffold419 TRF Tandem_Repeat 173703 173747 90 + . . scaffold419 GLEAN mRNA 177336 179382 1 - . ID=CGI_10028327; scaffold419 GLEAN promoter 179383 180382 1 - . ID=CGI_10028327; scaffold419 GLEAN mRNA 183715 184939 1 - . ID=CGI_10028328; scaffold419 GLEAN promoter 184940 185939 1 - . ID=CGI_10028328; scaffold419 GLEAN promoter 185136 186135 0.995917 + . ID=CGI_10028329; scaffold419 GLEAN mRNA 186136 186701 0.995917 + . ID=CGI_10028329; scaffold419 GLEAN mRNA 187518 193297 1 - . ID=CGI_10028330; scaffold419 WUBlastX DNA_IS4EU 191225 191440 54 - . . scaffold419 WUBlastX DNA_IS4EU 191231 191386 107 - . . scaffold419 GLEAN promoter 193298 194297 1 - . ID=CGI_10028330; scaffold419 WUBlastX LINE_I 193727 193855 23 - . . scaffold419 WUBlastX LINE_CR1-L2 193873 194175 66 - . . scaffold419 WUBlastX LINE_CR1 194099 194713 119 - . . scaffold419 WUBlastX LINE_L2 194177 194683 354 - . . scaffold419 WUBlastX LINE_CR1 194189 194821 113 - . . scaffold419 GLEAN mRNA 197217 200732 0.996819 - . ID=CGI_10028331; scaffold419 GLEAN promoter 200465 201464 1 + . ID=CGI_10028332; scaffold419 GLEAN promoter 200733 201732 0.996819 - . ID=CGI_10028331; scaffold419 GLEAN mRNA 201465 204159 1 + . ID=CGI_10028332; scaffold419 GLEAN promoter 203253 204252 0.702384 + . ID=CGI_10028333; scaffold419 GLEAN mRNA 204253 217171 0.702384 + . ID=CGI_10028333; scaffold419 GLEAN mRNA 206159 210445 0.99999 - . ID=CGI_10028334; scaffold419 TRF Tandem_Repeat 209450 209480 53 + . . scaffold419 GLEAN promoter 210446 211445 0.99999 - . ID=CGI_10028334; scaffold419 GLEAN mRNA 219023 237236 0.90309 - . ID=CGI_10028335; scaffold419 TRF Tandem_Repeat 220600 220807 156 + . . scaffold419 TRF Tandem_Repeat 220621 220807 203 + . . scaffold419 TRF Tandem_Repeat 220807 221048 216 + . . scaffold419 TRF Tandem_Repeat 221122 221208 122 + . . scaffold419 TRF Tandem_Repeat 222521 222552 55 + . . scaffold419 TRF Tandem_Repeat 223983 224036 108 + . . scaffold419 TRF Tandem_Repeat 230790 231000 248 + . . scaffold419 GLEAN promoter 237237 238236 0.90309 - . ID=CGI_10028335; scaffold419 GLEAN promoter 240400 241399 0.978042 + . ID=CGI_10028336; scaffold419 TRF Tandem_Repeat 240646 240820 305 + . . scaffold419 GLEAN mRNA 241400 242893 0.978042 + . ID=CGI_10028336; scaffold419 GLEAN mRNA 243081 266501 0.999183 - . ID=CGI_10028337; scaffold419 WUBlastX LINE_RTE-BovB 251911 252153 141 + . . scaffold419 WUBlastX LINE_RTE-BovB 252170 252457 45 + . . scaffold419 WUBlastX LINE_RTE-BovB 252230 252511 41 + . . scaffold419 WUBlastX LINE_RTE-BovB 252230 252466 157 + . . scaffold419 GLEAN promoter 266502 267501 0.999183 - . ID=CGI_10028337; scaffold419 TRF Tandem_Repeat 267735 267771 74 + . . scaffold419 TRF Tandem_Repeat 269160 269204 90 + . . scaffold419 WUBlastX LINE_L2 271639 271821 73 - . . scaffold419 GLEAN promoter 299337 300336 1 + . ID=CGI_10028338; scaffold419 GLEAN mRNA 300337 304582 1 + . ID=CGI_10028338; scaffold419 GLEAN promoter 304874 305873 0.999624 + . ID=CGI_10028339; scaffold419 GLEAN mRNA 305874 350498 0.999624 + . ID=CGI_10028339; scaffold419 TRF Tandem_Repeat 308531 308618 68 + . . scaffold419 TRF Tandem_Repeat 308531 308618 95 + . . scaffold419 TRF Tandem_Repeat 310401 311230 1307 + . . scaffold419 TRF Tandem_Repeat 343101 343150 73 + . . scaffold419 GLEAN promoter 352890 353889 1 + . ID=CGI_10028340; scaffold419 GLEAN mRNA 353890 354651 1 + . ID=CGI_10028340; scaffold419 TRF Tandem_Repeat 364002 364032 62 + . . scaffold419 GLEAN mRNA 367393 379271 0.553015 - . ID=CGI_10028341; scaffold419 TRF Tandem_Repeat 375789 375846 116 + . . scaffold419 TRF Tandem_Repeat 377662 377706 90 + . . scaffold419 GLEAN promoter 379272 380271 0.553015 - . ID=CGI_10028341; scaffold419 TRF Tandem_Repeat 384676 384710 70 + . . scaffold419 WUBlastX DNA_Crypton 394829 395413 110 + . . scaffold419 WUBlastX DNA_Crypton 395764 396168 59 + . . scaffold419 TRF Tandem_Repeat 396629 396735 124 + . . scaffold419 WUBlastX LINE_Penelope 396807 396998 31 + . . scaffold419 WUBlastX LINE_Penelope 396813 396974 55 + . . scaffold419 WUBlastX DNA_Merlin 397748 398020 111 - . . scaffold419 WUBlastX DNA_Merlin 398007 398576 247 - . . scaffold419 TRF Tandem_Repeat 399837 399903 89 + . . scaffold419 TRF Tandem_Repeat 402599 402651 79 + . . scaffold419 GLEAN promoter 410682 411681 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 410844 410890 94 + . . scaffold419 GLEAN mRNA 411682 433371 0.963955 + . ID=CGI_10028342; scaffold419 TRF Tandem_Repeat 412169 412208 80 + . . scaffold419 TRF Tandem_Repeat 417774 417907 117 + . . scaffold419 TRF Tandem_Repeat 418099 418215 92 + . . scaffold419 TRF Tandem_Repeat 424083 424132 57 + . . scaffold419 TRF Tandem_Repeat 425244 426694 1319 + . . scaffold419 TRF Tandem_Repeat 432642 432671 60 + . . scaffold419 TRF Tandem_Repeat 432698 432729 64 + . . scaffold419 TRF Tandem_Repeat 433391 433557 174 + . . scaffold419 TRF Tandem_Repeat 438627 438660 68 + . . scaffold419 TRF Tandem_Repeat 439093 439144 104 + . . scaffold419 GLEAN promoter 440618 441617 1 + . ID=CGI_10028343; scaffold419 GLEAN mRNA 441618 447298 1 + . ID=CGI_10028343; scaffold419 GLEAN mRNA 450052 453858 0.443455 - . ID=CGI_10028344; scaffold419 TRF Tandem_Repeat 450680 450843 222 + . . scaffold419 GLEAN promoter 453859 454858 0.443455 - . ID=CGI_10028344; scaffold419 GLEAN promoter 454795 455794 0.993069 + . ID=CGI_10028345; scaffold419 GLEAN mRNA 455795 461152 0.993069 + . ID=CGI_10028345; scaffold419 TRF Tandem_Repeat 456813 457104 440 + . . scaffold419 TRF Tandem_Repeat 458350 458509 203 + . . scaffold419 TRF Tandem_Repeat 459734 459958 398 + . . scaffold419 TRF Tandem_Repeat 460107 460396 328 + . . scaffold419 TRF Tandem_Repeat 460112 460396 327 + . . scaffold419 GLEAN promoter 460312 461311 0.830684 + . ID=CGI_10028346; scaffold419 GLEAN mRNA 461312 472667 0.830684 + . ID=CGI_10028346; scaffold419 GLEAN promoter 472276 473275 0.999344 + . ID=CGI_10028347; scaffold419 GLEAN mRNA 473276 491071 0.999344 + . ID=CGI_10028347; scaffold419 TRF Tandem_Repeat 478425 478483 118 + . . scaffold419 TRF Tandem_Repeat 485701 485731 62 + . . scaffold419 TRF Tandem_Repeat 487957 488050 165 + . . scaffold419 TRF Tandem_Repeat 488504 488570 134 + . . scaffold419 TRF Tandem_Repeat 491376 491483 126 + . . scaffold419 TRF Tandem_Repeat 491376 491483 108 + . . scaffold419 TRF Tandem_Repeat 493295 493338 88 + . . scaffold419 WUBlastX LTR_Gypsy 494604 495368 133 - . . scaffold419 WUBlastX LTR_Gypsy-Cigr 494847 495368 212 - . . scaffold419 WUBlastX LTR_Gypsy 495186 495443 60 - . . scaffold419 WUBlastX LTR_Gypsy 495954 496163 31 - . . scaffold419 WUBlastX LTR_ERV1 495984 496160 54 - . . scaffold419 WUBlastX LTR_Gypsy 496169 496375 60 - . . scaffold419 WUBlastX LTR_Gypsy-Cigr 496214 496378 75 - . . scaffold419 WUBlastX LTR_Gypsy 496380 496454 73 - . . scaffold419 WUBlastX LTR_Gypsy-Cigr 496450 497292 378 - . . scaffold419 WUBlastX LTR_Gypsy 497295 497621 211 - . . scaffold419 WUBlastX LTR_Gypsy 497310 497810 73 - . . scaffold419 WUBlastX LTR_Gypsy 497614 497925 22 - . . scaffold419 WUBlastX LTR_Gypsy 498560 498664 51 - . . scaffold419 WUBlastX LTR_Gypsy 498578 498694 69 - . . scaffold419 WUBlastX LTR_Gypsy 498679 499008 207 - . . scaffold419 WUBlastX LTR_Gypsy 498721 499122 160 - . . scaffold419 WUBlastX LTR_Gypsy 498961 499164 72 - . . scaffold419 WUBlastX LTR_Gypsy 499119 499298 61 - . . scaffold419 WUBlastX LTR_Gypsy 499546 499695 20 - . . scaffold419 WUBlastX LTR_Gypsy 499671 499916 36 - . . scaffold419 WUBlastX LTR_Gypsy 499722 499970 73 - . . scaffold419 WUBlastX LTR_Gypsy 499928 500029 37 - . . scaffold419 WUBlastX LTR_Gypsy-Cigr 499940 500053 22 - . . scaffold419 WUBlastX LTR_Gypsy 499970 500101 21 - . . scaffold419 WUBlastX LTR_Gypsy-Cigr 500459 500917 132 - . . scaffold419 TRF Tandem_Repeat 501534 501583 55 + . . scaffold419 TRF Tandem_Repeat 503465 503529 94 + . . scaffold419 WUBlastX DNA_hAT-Ac 507010 507489 35 + . . scaffold419 TRF Tandem_Repeat 509952 510085 198 + . . scaffold419 TRF Tandem_Repeat 514144 514208 94 + . . scaffold419 TRF Tandem_Repeat 514976 515029 99 + . . scaffold419 TRF Tandem_Repeat 516945 516974 60 + . . scaffold419 TRF Tandem_Repeat 519383 519647 231 + . . scaffold419 TRF Tandem_Repeat 519387 519648 139 + . . scaffold419 TRF Tandem_Repeat 519387 519648 170 + . . scaffold419 WUBlastX LINE_CR1 523104 523415 137 - . . scaffold419 WUBlastX LINE_CR1 523424 523972 261 - . . scaffold419 WUBlastX LINE_L2 523568 524065 110 - . . scaffold419 WUBlastX LINE_CR1 523574 523981 315 - . . scaffold419 WUBlastX LINE_CR1 523577 524188 49 - . . scaffold419 WUBlastX LTR_Gypsy 526003 526296 264 - . . scaffold419 GLEAN promoter 526244 527243 0.99171 + . ID=CGI_10028348; scaffold419 GLEAN mRNA 527244 532539 0.99171 + . ID=CGI_10028348; scaffold419 TRF Tandem_Repeat 531923 531968 74 + . . scaffold419 GLEAN mRNA 533510 539990 0.55742 - . ID=CGI_10028349; scaffold419 TRF Tandem_Repeat 537543 537821 434 + . . scaffold419 TRF Tandem_Repeat 538129 538294 262 + . . scaffold419 GLEAN promoter 539991 540990 0.55742 - . ID=CGI_10028349; scaffold419 WUBlastX LINE_RTE-X 543311 543487 57 - . . scaffold419 GLEAN promoter 561726 562725 0.891231 + . ID=CGI_10028350; scaffold419 GLEAN mRNA 562726 574606 0.891231 + . ID=CGI_10028350; scaffold419 TRF Tandem_Repeat 564033 564203 193 + . . scaffold419 TRF Tandem_Repeat 564200 564464 331 + . . scaffold419 TRF Tandem_Repeat 566945 567453 753 + . . scaffold419 TRF Tandem_Repeat 567825 567885 108 + . . scaffold419 TRF Tandem_Repeat 570525 571104 770 + . . scaffold419 TRF Tandem_Repeat 571107 571208 91 + . . scaffold419 GLEAN mRNA 578236 578493 0.999372 - . ID=CGI_10028351; scaffold419 GLEAN promoter 578494 579493 0.999372 - . ID=CGI_10028351; scaffold419 GLEAN mRNA 580142 582415 0.98952 - . ID=CGI_10028352; scaffold419 TRF Tandem_Repeat 581870 581951 103 + . . scaffold419 GLEAN promoter 582416 583415 0.98952 - . ID=CGI_10028352; scaffold419 GLEAN mRNA 587135 587401 0.999372 - . ID=CGI_10028353; scaffold419 GLEAN promoter 587402 588401 0.999372 - . ID=CGI_10028353; scaffold419 TRF Tandem_Repeat 588831 588900 140 + . . scaffold419 TRF Tandem_Repeat 600221 600322 186 + . . scaffold419 GLEAN promoter 601108 602107 0.61821 + . ID=CGI_10028354; scaffold419 GLEAN mRNA 602108 602296 0.61821 + . ID=CGI_10028354; scaffold419 TRF Tandem_Repeat 605246 605299 108 + . . scaffold419 TRF Tandem_Repeat 605537 605725 186 + . . scaffold419 TRF Tandem_Repeat 608219 608259 82 + . . scaffold419 TRF Tandem_Repeat 615994 616054 122 + . . scaffold419 TRF Tandem_Repeat 616081 616137 114 + . . scaffold419 GLEAN promoter 617366 618365 0.800247 + . ID=CGI_10028355; scaffold419 GLEAN mRNA 618366 631938 0.800247 + . ID=CGI_10028355; scaffold419 TRF Tandem_Repeat 626221 626277 105 + . . scaffold419 TRF Tandem_Repeat 634969 635120 209 + . . scaffold419 WUBlastX DNA_IS 638421 639209 1344 - . . scaffold419 GLEAN promoter 639570 640569 0.999994 + . ID=CGI_10028357; scaffold419 GLEAN mRNA 640570 642923 0.999994 + . ID=CGI_10028357; scaffold419 TRF Tandem_Repeat 641291 642469 1432 + . . scaffold419 WUBlastX LINE_RTE-X 647888 648232 116 - . . scaffold419 WUBlastX LINE_RTE-X 647945 648370 48 - . . scaffold419 WUBlastX LINE_RTE-X 648020 648298 61 - . . scaffold419 TRF Tandem_Repeat 651686 651734 98 + . . scaffold419 TRF Tandem_Repeat 652234 652316 58 + . . scaffold419 TRF Tandem_Repeat 652499 652525 54 + . . scaffold419 TRF Tandem_Repeat 662691 662734 81 + . . scaffold419 WUBlastX LTR_Gypsy 665703 665768 20 + . . scaffold419 WUBlastX LTR_Gypsy 665742 666506 329 + . . scaffold419 WUBlastX LTR_Gypsy 666132 666581 226 + . . scaffold419 WUBlastX LTR_Gypsy 666473 666601 26 + . . scaffold419 WUBlastX LTR_Gypsy 666611 666685 27 + . . scaffold419 WUBlastX LTR_Gypsy 667204 667707 225 + . . scaffold419 WUBlastX LTR_Gypsy 667375 667713 327 + . . scaffold419 WUBlastX LTR_Gypsy 667659 669800 1002 + . . scaffold419 GLEAN mRNA 671072 685906 0.998967 - . ID=CGI_10028358; scaffold419 TRF Tandem_Repeat 676058 676580 843 + . . scaffold419 TRF Tandem_Repeat 679373 679482 112 + . . scaffold419 WUBlastX LTR_Copia 680553 680651 32 - . . scaffold419 WUBlastX LTR_Gypsy 680767 682356 728 - . . scaffold419 WUBlastX LTR_Gypsy-Cigr 681034 684744 2539 - . . scaffold419 WUBlastX LTR_Gypsy 684526 684798 56 - . . scaffold419 WUBlastX LTR_Gypsy 684532 684873 29 - . . scaffold419 GLEAN promoter 685907 686906 0.998967 - . ID=CGI_10028358; scaffold419 TRF Tandem_Repeat 687563 687589 54 + . . scaffold419 WUBlastX LTR_Gypsy 689740 689928 33 + . . scaffold419 WUBlastX LTR_Gypsy 689927 690328 117 + . . scaffold419 WUBlastX LTR_Copia 690405 690671 43 + . . scaffold419 WUBlastX LTR_Gypsy-Cigr 690716 691078 104 + . . scaffold419 WUBlastX LTR_Gypsy 690767 691705 63 + . . scaffold419 WUBlastX LTR_Gypsy 691400 691720 105 + . . scaffold419 WUBlastX LTR_Gypsy 691496 691705 139 + . . scaffold419 WUBlastX LTR_Gypsy 691690 692949 741 + . . scaffold419 WUBlastX LTR_Gypsy 692245 693264 297 + . . scaffold419 WUBlastX LTR_Gypsy 693122 693466 155 + . . scaffold419 WUBlastX LTR_ERV1 693333 694016 156 + . . scaffold419 WUBlastX LTR_Gypsy-Cigr 693471 694277 689 + . . scaffold419 WUBlastX LTR_Gypsy 693471 694445 415 + . . scaffold419 WUBlastX LTR_Gypsy 694313 694636 46 + . . scaffold419 WUBlastX LTR_Gypsy 694553 694663 34 + . . scaffold419 WUBlastX LTR_Gypsy-Cigr 694571 694750 28 + . . scaffold419 GLEAN promoter 700303 701302 1 + . ID=CGI_10028359; scaffold419 GLEAN mRNA 701303 701976 1 + . ID=CGI_10028359; scaffold419 GLEAN promoter 707293 708292 1 + . ID=CGI_10028360; scaffold419 GLEAN mRNA 708293 708965 1 + . ID=CGI_10028360; scaffold419 GLEAN mRNA 714675 719740 1 - . ID=CGI_10028361; scaffold419 GLEAN promoter 719741 720740 1 - . ID=CGI_10028361; scaffold419 GLEAN mRNA 723886 724755 0.998991 - . ID=CGI_10028362; scaffold419 GLEAN promoter 724756 725755 0.998991 - . ID=CGI_10028362; scaffold419 GLEAN promoter 734948 735947 1 + . ID=CGI_10028364; scaffold419 GLEAN mRNA 735948 737081 1 + . ID=CGI_10028364; scaffold419 GLEAN mRNA 741718 771766 0.780313 - . ID=CGI_10028365; scaffold419 TRF Tandem_Repeat 742570 742601 50 + . . scaffold419 GLEAN promoter 747060 748059 0.651123 + . ID=CGI_10028366; scaffold419 GLEAN mRNA 748060 751581 0.651123 + . ID=CGI_10028366; scaffold419 TRF Tandem_Repeat 750423 750601 263 + . . scaffold419 TRF Tandem_Repeat 750461 750557 54 + . . scaffold419 TRF Tandem_Repeat 765117 765302 331 + . . scaffold419 TRF Tandem_Repeat 769977 770087 177 + . . scaffold419 TRF Tandem_Repeat 769981 770125 155 + . . scaffold419 TRF Tandem_Repeat 770085 770125 82 + . . scaffold419 TRF Tandem_Repeat 771335 771390 112 + . . scaffold419 GLEAN promoter 771767 772766 0.780313 - . ID=CGI_10028365; scaffold419 GLEAN mRNA 774668 774865 0.535029 - . ID=CGI_10028367; scaffold419 GLEAN promoter 774866 775865 0.535029 - . ID=CGI_10028367; scaffold419 TRF Tandem_Repeat 793732 794601 545 + . . scaffold419 TRF Tandem_Repeat 793732 794259 624 + . . scaffold419 TRF Tandem_Repeat 797706 797944 329 + . . scaffold419 GLEAN mRNA 806382 811629 0.999675 - . ID=CGI_10028368; scaffold419 WUBlastX LINE_RTE 807459 807725 37 + . . scaffold419 WUBlastX LINE_RTE-X 807513 807827 106 + . . scaffold419 WUBlastX LINE_RTE-X 807522 808292 74 + . . scaffold419 WUBlastX LINE_RTE-X 808182 808316 45 + . . scaffold419 WUBlastX LINE_RTE-X 808307 808429 36 + . . scaffold419 GLEAN promoter 811630 812629 0.999675 - . ID=CGI_10028368; scaffold419 GLEAN promoter 813011 814010 1 + . ID=CGI_10028369; scaffold419 GLEAN mRNA 814011 818085 1 + . ID=CGI_10028369; scaffold419 TRF Tandem_Repeat 815522 815599 147 + . . scaffold419 TRF Tandem_Repeat 817352 817378 54 + . . scaffold419 TRF Tandem_Repeat 822238 822385 86 + . . scaffold419 TRF Tandem_Repeat 822301 822432 61 + . . scaffold419 TRF Tandem_Repeat 824050 824087 60 + . . scaffold419 GLEAN mRNA 825936 828072 0.999997 - . ID=CGI_10028370; scaffold419 GLEAN promoter 828073 829072 0.999997 - . ID=CGI_10028370; scaffold419 GLEAN mRNA 843277 843516 1 - . ID=CGI_10028371; scaffold419 GLEAN promoter 843517 844516 1 - . ID=CGI_10028371; scaffold419 TRF Tandem_Repeat 843575 845068 1986 + . . scaffold419 TRF Tandem_Repeat 861885 861924 80 + . . scaffold419 TRF Tandem_Repeat 864904 864956 106 + . . scaffold419 TRF Tandem_Repeat 866246 866301 112 + . . scaffold419 WUBlastX LINE_L1-Tx1 866863 867327 33 - . . scaffold419 WUBlastX LINE_L1-Tx1 866929 867276 89 - . . scaffold419 WUBlastX LINE_L1 867636 867941 44 - . . scaffold419 WUBlastX LINE_L1-Tx1 867720 867944 58 - . . scaffold419 WUBlastX LINE_L1-Tx1 867934 868362 172 - . . scaffold419 WUBlastX LINE_L1-Tx1 868335 868511 116 + . . scaffold419 WUBlastX LINE_L1-Tx1 868514 870181 150 + . . scaffold419 WUBlastX LINE_L1-Tx1 868520 869899 196 + . . scaffold419 WUBlastX LINE_L1 870410 870841 56 + . . scaffold419 WUBlastX LINE_L1-Tx1 870482 871264 163 + . . scaffold419 WUBlastX LINE_L1-Tx1 871443 871985 90 + . . scaffold419 GLEAN mRNA 875262 875477 0.999372 - . ID=CGI_10028372; scaffold419 GLEAN promoter 875478 876477 0.999372 - . ID=CGI_10028372; scaffold419 GLEAN promoter 893890 894889 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_IS4EU 894743 895069 70 + . . scaffold419 GLEAN mRNA 894890 897714 0.983071 + . ID=CGI_10028373; scaffold419 WUBlastX DNA_hAT-Tip100 894899 895183 86 + . . scaffold419 WUBlastX DNA_hAT-Tip100 894899 895255 56 + . . scaffold419 WUBlastX DNA_Kolobok 895794 896087 34 + . . scaffold419 WUBlastX DNA_Kolobok 896075 896497 197 + . . scaffold419 WUBlastX DNA_Kolobok 896641 896829 105 + . . scaffold419 WUBlastX DNA_Kolobok 896952 897197 108 + . . scaffold419 WUBlastX DNA_Kolobok 897278 897448 79 + . . scaffold419 WUBlastX DNA_Kolobok 897556 897705 115 + . . scaffold419 WUBlastX DNA_Kolobok 898244 898411 65 - . . scaffold419 WUBlastX DNA_Kolobok 898660 898824 39 - . . scaffold419 GLEAN promoter 899141 900140 0.529934 + . ID=CGI_10028374; scaffold419 GLEAN mRNA 900141 909329 0.529934 + . ID=CGI_10028374; scaffold419 TRF Tandem_Repeat 910855 910951 108 + . . scaffold419 TRF Tandem_Repeat 916380 916825 342 + . . scaffold419 TRF Tandem_Repeat 916386 916825 372 + . . scaffold419 TRF Tandem_Repeat 916467 916819 324 + . . scaffold419 TRF Tandem_Repeat 921306 921341 54 + . . scaffold419 TRF Tandem_Repeat 922005 922046 84 + . . scaffold419 TRF Tandem_Repeat 922211 922260 82 + . . scaffold419 TRF Tandem_Repeat 922608 922667 120 + . . scaffold419 TRF Tandem_Repeat 922822 922857 56 + . . scaffold419 TRF Tandem_Repeat 923557 923604 96 + . . scaffold419 TRF Tandem_Repeat 923755 923802 96 + . . scaffold419 TRF Tandem_Repeat 924319 924374 112 + . . scaffold419 TRF Tandem_Repeat 924465 924538 130 + . . scaffold419 TRF Tandem_Repeat 924836 924869 59 + . . scaffold419 TRF Tandem_Repeat 925169 925229 77 + . . scaffold419 TRF Tandem_Repeat 927602 927670 138 + . . scaffold419 WUBlastX LTR_Gypsy 929400 929534 86 - . . scaffold419 WUBlastX LINE_Penelope 930511 930615 24 - . . scaffold419 WUBlastX LINE_Penelope 930726 931091 67 - . . scaffold419 WUBlastX LINE_RTE-BovB 931698 931934 84 + . . scaffold419 TRF Tandem_Repeat 936596 936681 172 + . . scaffold419 TRF Tandem_Repeat 938156 938207 68 + . . scaffold419 TRF Tandem_Repeat 941046 941095 100 + . . scaffold419 WUBlastX LINE_L2 945038 945100 20 - . . scaffold419 WUBlastX RC_Helitron 945112 946284 499 - . . scaffold419 GLEAN promoter 945439 946438 0.5 + . ID=CGI_10028375; scaffold419 GLEAN mRNA 946439 948058 0.5 + . ID=CGI_10028375; scaffold419 GLEAN mRNA 951385 962730 0.822516 - . ID=CGI_10028376; scaffold419 GLEAN promoter 962731 963730 0.822516 - . ID=CGI_10028376; scaffold419 TRF Tandem_Repeat 963745 964129 252 + . . scaffold419 TRF Tandem_Repeat 963745 964129 268 + . . scaffold419 TRF Tandem_Repeat 963767 964124 287 + . . scaffold419 GLEAN mRNA 964920 973887 0.851774 - . ID=CGI_10028377; scaffold419 GLEAN promoter 973888 974887 0.851774 - . ID=CGI_10028377; scaffold419 TRF Tandem_Repeat 979433 979478 92 + . . scaffold419 TRF Tandem_Repeat 980161 980235 109 + . . scaffold419 GLEAN promoter 982066 983065 0.969115 + . ID=CGI_10028378; scaffold419 GLEAN mRNA 983066 983449 0.969115 + . ID=CGI_10028378; scaffold419 GLEAN mRNA 985014 987332 0.999999 - . ID=CGI_10028379; scaffold419 GLEAN promoter 987136 988135 0.65492 + . ID=CGI_10028380; scaffold419 GLEAN promoter 987333 988332 0.999999 - . ID=CGI_10028379; scaffold419 GLEAN mRNA 988136 992658 0.65492 + . ID=CGI_10028380; scaffold419 GLEAN promoter 994843 995842 0.841405 + . ID=CGI_10028381; scaffold419 TRF Tandem_Repeat 994946 995005 120 + . . scaffold419 GLEAN mRNA 995843 997688 0.841405 + . ID=CGI_10028381; scaffold419 TRF Tandem_Repeat 996243 996311 138 + . . scaffold419 GLEAN promoter 996700 997699 0.999999 + . ID=CGI_10028382; scaffold419 GLEAN mRNA 997700 1001039 0.999999 + . ID=CGI_10028382; scaffold419 GLEAN mRNA 1003232 1027862 0.998148 - . ID=CGI_10028383; scaffold419 GLEAN promoter 1027863 1028862 0.998148 - . ID=CGI_10028383; scaffold419 GLEAN promoter 1032396 1033395 0.601646 + . ID=CGI_10028384; scaffold419 GLEAN mRNA 1033396 1040252 0.601646 + . ID=CGI_10028384; scaffold419 GLEAN mRNA 1069675 1074347 0.0897075 - . ID=CGI_10028385; scaffold419 GLEAN promoter 1074348 1075347 0.0897075 - . ID=CGI_10028385; scaffold419 GLEAN promoter 1075054 1076053 0.937506 + . ID=CGI_10028386; scaffold419 TRF Tandem_Repeat 1075144 1075201 116 + . . scaffold419 GLEAN mRNA 1076054 1088367 0.937506 + . ID=CGI_10028386; scaffold419 WUBlastX LINE_L1-Tx1 1077910 1078035 21 + . . scaffold419 WUBlastX LINE_L1-Tx1 1078623 1078751 22 + . . scaffold419 WUBlastX LINE_L1-Tx1 1078644 1080155 381 + . . scaffold419 TRF Tandem_Repeat 1088339 1089588 1821 + . . scaffold419 TRF Tandem_Repeat 1092208 1092239 64 + . . scaffold419 TRF Tandem_Repeat 1099798 1099828 62 + . . scaffold419 TRF Tandem_Repeat 1116675 1116724 84 + . . scaffold419 GLEAN promoter 1130069 1131068 0.745397 + . ID=CGI_10028387; scaffold419 GLEAN mRNA 1131069 1147710 0.745397 + . ID=CGI_10028387; scaffold419 TRF Tandem_Repeat 1139932 1139977 92 + . . scaffold419 GLEAN mRNA 1147525 1147734 0.430093 - . ID=CGI_10028388; scaffold419 GLEAN promoter 1147735 1148734 0.430093 - . ID=CGI_10028388; scaffold419 GLEAN promoter 1151762 1152761 1 + . ID=CGI_10028389; scaffold419 GLEAN mRNA 1152762 1159545 1 + . ID=CGI_10028389; scaffold419 TRF Tandem_Repeat 1153505 1153546 84 + . . scaffold419 GLEAN mRNA 1162167 1183881 0.999027 - . ID=CGI_10028390; scaffold419 GLEAN promoter 1165148 1166147 0.728723 + . ID=CGI_10028391; scaffold419 GLEAN mRNA 1166148 1182818 0.728723 + . ID=CGI_10028391; scaffold419 TRF Tandem_Repeat 1172390 1172461 121 + . . scaffold419 TRF Tandem_Repeat 1172615 1173320 1168 + . . scaffold419 WUBlastX LINE_RTE-X 1174115 1174294 112 - . . scaffold419 TRF Tandem_Repeat 1178068 1178137 113 + . . scaffold419 GLEAN promoter 1183882 1184881 0.999027 - . ID=CGI_10028390; scaffold419 GLEAN mRNA 1189214 1191336 1 - . ID=CGI_10028392; scaffold419 GLEAN promoter 1191337 1192336 1 - . ID=CGI_10028392; scaffold419 GLEAN mRNA 1191772 1191975 0.999999 - . ID=CGI_10028393; scaffold419 GLEAN promoter 1191976 1192975 0.999999 - . ID=CGI_10028393; scaffold419 GLEAN mRNA 1192387 1202790 0.999999 - . ID=CGI_10028394; scaffold419 GLEAN promoter 1202791 1203790 0.999999 - . ID=CGI_10028394; scaffold419 TRF Tandem_Repeat 1206301 1206481 272 + . . scaffold419 GLEAN promoter 1208307 1209306 0.512525 + . ID=CGI_10028395; scaffold419 GLEAN mRNA 1209307 1227041 0.512525 + . ID=CGI_10028395; scaffold419 TRF Tandem_Repeat 1211336 1211380 90 + . . scaffold419 GLEAN mRNA 1214109 1229861 0.5 - . ID=CGI_10028396; scaffold419 TRF Tandem_Repeat 1217427 1217480 108 + . . scaffold419 TRF Tandem_Repeat 1226416 1226451 65 + . . scaffold419 GLEAN promoter 1229862 1230861 0.5 - . ID=CGI_10028396; scaffold419 TRF Tandem_Repeat 1231190 1231326 94 + . . scaffold419 GLEAN promoter 1232525 1233524 0.672922 + . ID=CGI_10028397; scaffold419 GLEAN mRNA 1233525 1235627 0.672922 + . ID=CGI_10028397; scaffold419 TRF Tandem_Repeat 1244527 1244602 111 + . . scaffold419 GLEAN promoter 1244656 1245655 1 + . ID=CGI_10028398; scaffold419 GLEAN mRNA 1245656 1250225 1 + . ID=CGI_10028398; scaffold419 TRF Tandem_Repeat 1245996 1246042 94 + . . scaffold419 WUBlastX LTR_Copia 1252258 1252407 23 - . . scaffold419 WUBlastX LTR_Gypsy 1252393 1256256 3243 - . . scaffold419 WUBlastX LTR_Gypsy 1256346 1257263 93 - . . scaffold419 WUBlastX LTR_Gypsy 1256547 1257344 399 - . . scaffold419 WUBlastX LTR_Gypsy 1256772 1257470 52 - . . scaffold419 GLEAN promoter 1258387 1259386 1 + . ID=CGI_10028400; scaffold419 GLEAN mRNA 1259387 1260574 1 + . ID=CGI_10028400; scaffold419 GLEAN mRNA 1261581 1267588 0.999975 - . ID=CGI_10028401; scaffold419 GLEAN promoter 1265298 1266297 0.922495 + . ID=CGI_10028402; scaffold419 GLEAN mRNA 1266298 1276946 0.922495 + . ID=CGI_10028402; scaffold419 GLEAN promoter 1267589 1268588 0.999975 - . ID=CGI_10028401; scaffold419 WUBlastX LINE_CR1 1269409 1269588 76 - . . scaffold419 WUBlastX LINE_CR1 1269810 1269941 22 - . . scaffold419 WUBlastX LINE_CR1 1269822 1269932 26 - . . scaffold419 WUBlastX LINE_CR1 1269979 1270245 60 - . . scaffold419 WUBlastX LINE_CR1 1269985 1270104 94 - . . scaffold419 WUBlastX LINE_CR1 1269988 1270137 64 - . . scaffold419 GLEAN mRNA 1273694 1274755 0.481511 - . ID=CGI_10028403; scaffold419 WUBlastX LTR_ERV1 1273790 1274203 23 - . . scaffold419 GLEAN promoter 1274756 1275755 0.481511 - . ID=CGI_10028403; scaffold419 GLEAN mRNA 1274986 1296501 0.498748 - . ID=CGI_10028404; scaffold419 TRF Tandem_Repeat 1277072 1277141 68 + . . scaffold419 TRF Tandem_Repeat 1277316 1278203 1117 + . . scaffold419 TRF Tandem_Repeat 1285268 1285309 75 + . . scaffold419 GLEAN promoter 1296502 1297501 0.498748 - . ID=CGI_10028404; scaffold419 TRF Tandem_Repeat 1306121 1306148 56 + . . scaffold419 GLEAN mRNA 1349895 1350350 0.553659 - . ID=CGI_10028405; scaffold419 GLEAN promoter 1350351 1351350 0.553659 - . ID=CGI_10028405; scaffold419 GLEAN promoter 1354942 1355941 0.99887 + . ID=CGI_10028406; scaffold419 GLEAN mRNA 1355942 1356459 0.99887 + . ID=CGI_10028406; scaffold419 WUBlastX DNA_Maverick 1357550 1357873 192 - . . scaffold419 WUBlastX DNA_Maverick 1357963 1358406 322 - . . scaffold419 WUBlastX DNA_Maverick 1358489 1360783 1492 - . . scaffold419 WUBlastX DNA_Maverick 1359644 1361077 413 - . . scaffold419 WUBlastX DNA_Maverick 1362259 1362885 357 - . . scaffold419 WUBlastX DNA_Maverick 1363009 1363467 90 - . . scaffold419 WUBlastX DNA_Maverick 1363039 1363422 95 - . . scaffold419 WUBlastX DNA_Maverick 1363489 1364763 680 - . . scaffold419 WUBlastX DNA_Maverick 1365225 1365461 40 - . . scaffold419 WUBlastX DNA_Maverick 1365234 1365554 37 - . . scaffold419 WUBlastX DNA_Maverick 1365540 1365674 54 - . . scaffold419 WUBlastX DNA_Maverick 1365692 1366810 529 - . . scaffold419 WUBlastX LTR_Gypsy 1366984 1367058 26 - . . scaffold419 WUBlastX LTR_Gypsy 1368459 1368581 31 + . . scaffold419 WUBlastX LTR_Gypsy 1368468 1368680 27 + . . scaffold419 WUBlastX LTR_Gypsy 1368680 1368787 37 + . . scaffold419 WUBlastX LTR_Gypsy 1369001 1369675 21 + . . scaffold419 WUBlastX LTR_Gypsy 1369163 1369804 37 + . . scaffold419 WUBlastX LTR_Gypsy 1369283 1369669 52 + . . scaffold419 WUBlastX LTR_Gypsy 1369367 1370521 313 + . . scaffold419 WUBlastX LTR_Gypsy 1370108 1370623 149 + . . scaffold419 WUBlastX LTR_Gypsy 1370228 1370707 61 + . . scaffold419 WUBlastX LTR_Gypsy 1370990 1371040 24 + . . scaffold419 TRF Tandem_Repeat 1371657 1371711 65 + . . scaffold419 TRF Tandem_Repeat 1371660 1371715 71 + . . scaffold419 TRF Tandem_Repeat 1373184 1373809 932 + . . scaffold419 TRF Tandem_Repeat 1380888 1380917 60 + . . scaffold419 WUBlastX DNA_PiggyBac 1381244 1381468 48 + . . scaffold419 GLEAN mRNA 1391805 1420935 0.531308 - . ID=CGI_10028407; scaffold419 TRF Tandem_Repeat 1396998 1397783 1120 + . . scaffold419 TRF Tandem_Repeat 1413304 1413349 83 + . . scaffold419 TRF Tandem_Repeat 1413307 1413357 59 + . . scaffold419 GLEAN promoter 1420936 1421935 0.531308 - . ID=CGI_10028407; scaffold419 GLEAN mRNA 1441472 1441648 0.565455 - . ID=CGI_10028408; scaffold419 GLEAN promoter 1441649 1442648 0.565455 - . ID=CGI_10028408; scaffold419 WUBlastX LINE_RTE-X 1464429 1464914 86 - . . scaffold419 WUBlastX LINE_RTE-X 1464651 1464908 103 - . . scaffold419 WUBlastX LINE_RTE-BovB 1464920 1465030 20 - . . scaffold419 WUBlastX LINE_RTE-X 1464920 1465000 34 - . . scaffold419 TRF Tandem_Repeat 1465358 1465446 63 + . . scaffold419 TRF Tandem_Repeat 1465471 1465507 74 + . . scaffold419 GLEAN mRNA 1486333 1498505 0.220723 - . ID=CGI_10028409; scaffold419 TRF Tandem_Repeat 1497449 1497486 76 + . . scaffold419 GLEAN promoter 1498506 1499505 0.220723 - . ID=CGI_10028409; scaffold419 GLEAN promoter 1499187 1500186 0.927019 + . ID=CGI_10028410; scaffold419 GLEAN mRNA 1500187 1509594 0.927019 + . ID=CGI_10028410; scaffold419 GLEAN mRNA 1510930 1554056 0.691725 - . ID=CGI_10028411; scaffold419 TRF Tandem_Repeat 1534005 1534304 384 + . . scaffold419 TRF Tandem_Repeat 1536257 1536359 127 + . . scaffold419 TRF Tandem_Repeat 1536268 1536427 167 + . . scaffold419 TRF Tandem_Repeat 1536426 1536550 109 + . . scaffold419 TRF Tandem_Repeat 1536454 1536544 119 + . . scaffold419 GLEAN promoter 1552490 1553489 0.976018 + . ID=CGI_10028412; scaffold419 GLEAN mRNA 1553490 1576629 0.976018 + . ID=CGI_10028412; scaffold419 GLEAN promoter 1554057 1555056 0.691725 - . ID=CGI_10028411; scaffold419 TRF Tandem_Repeat 1565390 1565434 90 + . . scaffold419 TRF Tandem_Repeat 1567784 1568023 268 + . . scaffold419 TRF Tandem_Repeat 1570557 1570611 110 + . . scaffold419 TRF Tandem_Repeat 1572018 1572071 76 + . . scaffold419 TRF Tandem_Repeat 1572023 1572068 76 + . . scaffold419 TRF Tandem_Repeat 1575484 1575547 128 + . . scaffold419 TRF Tandem_Repeat 1578600 1578654 110 + . . scaffold419 TRF Tandem_Repeat 1579805 1579859 110 + . . scaffold419 GLEAN promoter 1582061 1583060 0.999926 + . ID=CGI_10028413; scaffold419 GLEAN mRNA 1583061 1605058 0.999926 + . ID=CGI_10028413; scaffold419 TRF Tandem_Repeat 1583349 1583402 108 + . . scaffold419 TRF Tandem_Repeat 1583750 1583807 116 + . . scaffold419 TRF Tandem_Repeat 1586198 1586253 112 + . . scaffold419 TRF Tandem_Repeat 1588995 1589129 209 + . . scaffold419 TRF Tandem_Repeat 1599015 1599069 110 + . . scaffold419 GLEAN mRNA 1629918 1649595 0.840317 - . ID=CGI_10028414; scaffold419 TRF Tandem_Repeat 1635813 1635851 78 + . . scaffold419 TRF Tandem_Repeat 1646247 1646323 122 + . . scaffold419 GLEAN promoter 1649596 1650595 0.840317 - . ID=CGI_10028414; scaffold419 TRF Tandem_Repeat 1654975 1655041 80 + . . scaffold419 GLEAN mRNA 1659861 1691072 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1660601 1660653 106 + . . scaffold419 TRF Tandem_Repeat 1663178 1663213 72 + . . scaffold419 TRF Tandem_Repeat 1663222 1663319 178 + . . scaffold419 TRF Tandem_Repeat 1665708 1665742 52 + . . scaffold419 TRF Tandem_Repeat 1668593 1668644 95 + . . scaffold419 GLEAN promoter 1669464 1670463 0.299091 + . ID=CGI_10028416; scaffold419 GLEAN mRNA 1670464 1681656 0.299091 + . ID=CGI_10028416; scaffold419 TRF Tandem_Repeat 1672500 1672566 134 + . . scaffold419 TRF Tandem_Repeat 1686338 1686402 130 + . . scaffold419 TRF Tandem_Repeat 1688096 1688149 108 + . . scaffold419 GLEAN promoter 1691073 1692072 0.437181 - . ID=CGI_10028415; scaffold419 TRF Tandem_Repeat 1693188 1693264 154 + . . scaffold419 GLEAN mRNA 1697945 1704094 0.99962 - . ID=CGI_10028417; scaffold419 GLEAN promoter 1704095 1705094 0.99962 - . ID=CGI_10028417; scaffold419 TRF Tandem_Repeat 1713327 1713994 698 + . . scaffold419 TRF Tandem_Repeat 1723964 1724255 318 + . . scaffold41900 GLEAN mRNA 1992 42353 0.842985 - . ID=CGI_10005815; scaffold41900 TRF Tandem_Repeat 35792 35841 82 + . . scaffold41900 GLEAN promoter 42354 43353 0.842985 - . ID=CGI_10005815; scaffold41900 GLEAN mRNA 42792 46989 0.211753 - . ID=CGI_10005816; scaffold41900 GLEAN promoter 46990 47989 0.211753 - . ID=CGI_10005816; scaffold41900 WUBlastX LTR_DIRS 65154 65867 45 + . . scaffold41900 WUBlastX LTR_DIRS 65427 65759 76 + . . scaffold41900 WUBlastX LTR_DIRS 65798 66286 101 + . . scaffold41900 WUBlastX LTR_Gypsy 66124 67020 120 + . . scaffold41900 WUBlastX LTR_DIRS 66283 67038 630 + . . scaffold41900 TRF Tandem_Repeat 85046 85105 120 + . . scaffold41900 TRF Tandem_Repeat 86832 86874 77 + . . scaffold41900 WUBlastX LINE_CR1-L2 88290 88793 80 - . . scaffold41900 WUBlastX LINE_L2 88290 88916 51 - . . scaffold41900 WUBlastX LINE_L2 89110 89442 72 - . . scaffold41900 WUBlastX LINE_L2 89437 89679 77 - . . scaffold41900 WUBlastX LINE_L2 89512 89682 120 - . . scaffold41900 WUBlastX LINE_L2 89684 90157 303 - . . scaffold41900 WUBlastX LINE_CR1 89687 90364 97 - . . scaffold41900 TRF Tandem_Repeat 93091 93132 84 + . . scaffold41900 GLEAN mRNA 96016 103390 1 - . ID=CGI_10005818; scaffold41900 TRF Tandem_Repeat 102434 102597 220 + . . scaffold41900 GLEAN promoter 103391 104390 1 - . ID=CGI_10005818; scaffold41900 WUBlastX LINE_RTE-BovB 121348 121569 45 + . . scaffold41900 WUBlastX LINE_RTE-BovB 121387 121569 62 + . . scaffold41900 WUBlastX LINE_RTE-BovB 121592 121864 46 + . . scaffold41900 WUBlastX LINE_RTE-BovB 121592 121783 86 + . . scaffold41900 TRF Tandem_Repeat 126772 127733 1109 + . . scaffold41900 GLEAN mRNA 132371 132940 0.999547 - . ID=CGI_10005819; scaffold41900 GLEAN promoter 132941 133940 0.999547 - . ID=CGI_10005819; scaffold41900 GLEAN mRNA 133258 134947 0.999547 - . ID=CGI_10005820; scaffold41900 GLEAN promoter 134948 135947 0.999547 - . ID=CGI_10005820; scaffold41900 GLEAN mRNA 135380 137224 0.999547 - . ID=CGI_10005821; scaffold41900 GLEAN promoter 137225 137399 0.999547 - . ID=CGI_10005821; scaffold41902 GLEAN mRNA 2604 2804 0.999372 - . ID=CGI_10005822; scaffold41902 GLEAN promoter 2805 3804 0.999372 - . ID=CGI_10005822; scaffold41902 TRF Tandem_Repeat 7907 7931 50 + . . scaffold41902 GLEAN mRNA 9091 10173 1 - . ID=CGI_10005823; scaffold41902 GLEAN promoter 10174 11173 1 - . ID=CGI_10005823; scaffold41902 WUBlastX LINE_L1-Tx1 11808 12110 81 - . . scaffold41902 WUBlastX LINE_L1-Tx1 12091 12396 29 - . . scaffold41902 WUBlastX LINE_L1 12381 12419 23 - . . scaffold41902 TRF Tandem_Repeat 15665 15885 233 + . . scaffold41902 TRF Tandem_Repeat 15665 15885 267 + . . scaffold41902 TRF Tandem_Repeat 15666 15885 268 + . . scaffold41902 TRF Tandem_Repeat 15666 15810 227 + . . scaffold41902 TRF Tandem_Repeat 19787 19883 160 + . . scaffold41902 TRF Tandem_Repeat 19787 19882 138 + . . scaffold41902 TRF Tandem_Repeat 19789 19883 144 + . . scaffold41902 TRF Tandem_Repeat 22333 22393 104 + . . scaffold41902 GLEAN mRNA 22900 25678 0.988927 - . ID=CGI_10005824; scaffold41902 GLEAN promoter 25679 26678 0.988927 - . ID=CGI_10005824; scaffold41902 GLEAN promoter 37300 38299 1 + . ID=CGI_10005825; scaffold41902 GLEAN mRNA 38300 50104 1 + . ID=CGI_10005825; scaffold41902 GLEAN mRNA 52427 56687 0.648556 - . ID=CGI_10005826; scaffold41902 TRF Tandem_Repeat 52809 52864 112 + . . scaffold41902 GLEAN promoter 56688 57687 0.648556 - . ID=CGI_10005826; scaffold41902 TRF Tandem_Repeat 57912 57950 78 + . . scaffold41902 TRF Tandem_Repeat 61142 61555 373 + . . scaffold41902 TRF Tandem_Repeat 61273 61650 368 + . . scaffold41902 TRF Tandem_Repeat 63999 64035 74 + . . scaffold41902 TRF Tandem_Repeat 65406 65961 211 + . . scaffold41902 WUBlastX LTR_Ngaro 73734 74717 384 - . . scaffold41902 WUBlastX LTR_Ngaro 74642 76006 991 - . . scaffold41902 TRF Tandem_Repeat 76771 76819 98 + . . scaffold41902 GLEAN promoter 80919 81918 0.701656 + . ID=CGI_10005827; scaffold41902 GLEAN mRNA 81919 98435 0.701656 + . ID=CGI_10005827; scaffold41902 TRF Tandem_Repeat 85307 85888 880 + . . scaffold41902 TRF Tandem_Repeat 90865 90930 132 + . . scaffold41902 GLEAN mRNA 99683 107227 0.99995 - . ID=CGI_10005828; scaffold41902 TRF Tandem_Repeat 102965 103238 282 + . . scaffold41902 TRF Tandem_Repeat 102965 103238 252 + . . scaffold41902 GLEAN promoter 107228 108227 0.99995 - . ID=CGI_10005828; scaffold41902 TRF Tandem_Repeat 112327 112353 54 + . . scaffold41902 TRF Tandem_Repeat 113269 113302 61 + . . scaffold41902 TRF Tandem_Repeat 117486 117526 64 + . . scaffold41902 GLEAN mRNA 119394 136680 0.999988 - . ID=CGI_10005829; scaffold41902 TRF Tandem_Repeat 120589 120738 219 + . . scaffold41902 TRF Tandem_Repeat 120589 120738 219 + . . scaffold41902 TRF Tandem_Repeat 120589 120738 219 + . . scaffold41902 TRF Tandem_Repeat 121220 121280 122 + . . scaffold41902 TRF Tandem_Repeat 125106 125163 116 + . . scaffold41902 TRF Tandem_Repeat 136471 136512 68 + . . scaffold41902 GLEAN promoter 136681 137649 0.999988 - . ID=CGI_10005829; scaffold41928 TRF Tandem_Repeat 9976 10352 185 + . . scaffold41928 TRF Tandem_Repeat 10007 10318 181 + . . scaffold41928 TRF Tandem_Repeat 10681 10738 55 + . . scaffold41928 TRF Tandem_Repeat 22912 22961 100 + . . scaffold41928 GLEAN mRNA 28917 39705 0.734554 - . ID=CGI_10005836; scaffold41928 TRF Tandem_Repeat 30980 31059 133 + . . scaffold41928 TRF Tandem_Repeat 32433 32493 122 + . . scaffold41928 WUBlastX DNA_Zator 35796 36233 42 + . . scaffold41928 WUBlastX DNA_Zator 35904 36134 58 + . . scaffold41928 TRF Tandem_Repeat 38825 38867 86 + . . scaffold41928 GLEAN promoter 39706 40705 0.734554 - . ID=CGI_10005836; scaffold41928 TRF Tandem_Repeat 40779 40837 118 + . . scaffold41928 TRF Tandem_Repeat 45749 45786 53 + . . scaffold41928 TRF Tandem_Repeat 53820 54366 704 + . . scaffold41928 GLEAN mRNA 55940 69544 0.43277 - . ID=CGI_10005837; scaffold41928 GLEAN promoter 69545 70544 0.43277 - . ID=CGI_10005837; scaffold41928 TRF Tandem_Repeat 97221 97302 137 + . . scaffold41928 TRF Tandem_Repeat 104993 105045 106 + . . scaffold41948 WUBlastX LINE_RTE-X 3125 3592 25 + . . scaffold41948 GLEAN mRNA 48331 65823 0.993262 - . ID=CGI_10005847; scaffold41948 TRF Tandem_Repeat 60865 60904 80 + . . scaffold41948 GLEAN promoter 65824 66823 0.993262 - . ID=CGI_10005847; scaffold41948 TRF Tandem_Repeat 74170 74207 67 + . . scaffold41948 TRF Tandem_Repeat 81487 81529 86 + . . scaffold41948 TRF Tandem_Repeat 82816 82875 120 + . . scaffold41948 TRF Tandem_Repeat 83173 83223 102 + . . scaffold41948 TRF Tandem_Repeat 93970 94014 90 + . . scaffold41948 TRF Tandem_Repeat 95807 95850 72 + . . scaffold41948 TRF Tandem_Repeat 96598 96711 84 + . . scaffold41948 TRF Tandem_Repeat 98871 98921 102 + . . scaffold41948 TRF Tandem_Repeat 106245 106274 51 + . . scaffold41948 TRF Tandem_Repeat 109414 109465 104 + . . scaffold41948 TRF Tandem_Repeat 121005 121059 110 + . . scaffold41948 TRF Tandem_Repeat 123924 123955 64 + . . scaffold41948 TRF Tandem_Repeat 124683 124714 64 + . . scaffold41948 TRF Tandem_Repeat 125481 125543 126 + . . scaffold41948 TRF Tandem_Repeat 126908 126937 60 + . . scaffold41948 TRF Tandem_Repeat 127692 127754 126 + . . scaffold41948 TRF Tandem_Repeat 135604 135655 58 + . . scaffold41954 WUBlastX LINE_RTE-BovB 1563 1736 74 + . . scaffold41954 WUBlastX LINE_RTE-BovB 1733 1939 116 + . . scaffold41954 WUBlastX LINE_RTE-BovB 1733 2065 93 + . . scaffold41954 GLEAN mRNA 3811 10371 1 - . ID=CGI_10005849; scaffold41954 TRF Tandem_Repeat 8432 8480 53 + . . scaffold41954 GLEAN promoter 10372 11371 1 - . ID=CGI_10005849; scaffold41954 TRF Tandem_Repeat 15614 15657 61 + . . scaffold41954 TRF Tandem_Repeat 15618 15656 51 + . . scaffold41954 TRF Tandem_Repeat 31518 31555 76 + . . scaffold41954 TRF Tandem_Repeat 36943 37024 139 + . . scaffold41954 WUBlastX LINE_CR1-L2 50806 51288 116 + . . scaffold41954 WUBlastX LINE_CR1-L2 51138 51374 28 + . . scaffold41954 WUBlastX LINE_CR1-L2 51368 51943 80 + . . scaffold41954 TRF Tandem_Repeat 52195 52219 50 + . . scaffold41954 WUBlastX DNA_NOF? 54567 55118 106 - . . scaffold41954 TRF Tandem_Repeat 56492 56694 316 + . . scaffold41954 WUBlastX DNA_hAT-Tip100 63231 63437 70 + . . scaffold41954 WUBlastX DNA_hAT-Tip100 63276 63476 99 + . . scaffold41954 WUBlastX DNA_hAT-Tip100 63457 64725 499 + . . scaffold41954 WUBlastX DNA_hAT-Tip100 64733 65236 175 + . . scaffold41954 GLEAN promoter 65599 66598 0.999676 + . ID=CGI_10005850; scaffold41954 GLEAN mRNA 66599 68433 0.999676 + . ID=CGI_10005850; scaffold41954 TRF Tandem_Repeat 71424 71476 61 + . . scaffold41954 TRF Tandem_Repeat 71424 71476 61 + . . scaffold41954 GLEAN promoter 72080 73079 0.99219 + . ID=CGI_10005851; scaffold41954 GLEAN mRNA 73080 77538 0.99219 + . ID=CGI_10005851; scaffold41954 TRF Tandem_Repeat 79754 80687 469 + . . scaffold41954 TRF Tandem_Repeat 79879 80687 1108 + . . scaffold41954 TRF Tandem_Repeat 80918 81278 590 + . . scaffold41954 TRF Tandem_Repeat 81403 81884 291 + . . scaffold41954 TRF Tandem_Repeat 81522 81861 435 + . . scaffold41954 GLEAN mRNA 82845 90970 1 - . ID=CGI_10005852; scaffold41954 TRF Tandem_Repeat 87346 87383 76 + . . scaffold41954 GLEAN promoter 90971 91970 1 - . ID=CGI_10005852; scaffold41954 GLEAN promoter 92049 93048 0.989895 + . ID=CGI_10005853; scaffold41954 GLEAN mRNA 93049 113682 0.989895 + . ID=CGI_10005853; scaffold41954 TRF Tandem_Repeat 94599 94928 412 + . . scaffold41954 TRF Tandem_Repeat 95252 95398 249 + . . scaffold41954 TRF Tandem_Repeat 95490 95611 118 + . . scaffold41954 WUBlastX LINE_L1 101975 102082 25 - . . scaffold41954 WUBlastX LINE_L1-Tx1 102274 102354 37 - . . scaffold41954 WUBlastX LINE_L1 102339 102671 42 - . . scaffold41954 WUBlastX LINE_L1 102339 102602 57 - . . scaffold41954 WUBlastX LINE_L1-Tx1 102991 103362 123 - . . scaffold41954 GLEAN mRNA 103267 126908 0.678183 - . ID=CGI_10005854; scaffold41954 WUBlastX LINE_L1-Tx1 103382 103759 139 - . . scaffold41954 WUBlastX LINE_L1-Tx1 103382 103858 24 - . . scaffold41954 TRF Tandem_Repeat 106054 106107 108 + . . scaffold41954 TRF Tandem_Repeat 111281 111410 242 + . . scaffold41954 TRF Tandem_Repeat 118100 118198 53 + . . scaffold41954 TRF Tandem_Repeat 118109 118210 75 + . . scaffold41954 GLEAN promoter 126909 127908 0.678183 - . ID=CGI_10005854; scaffold41954 GLEAN promoter 127673 128672 1 + . ID=CGI_10005855; scaffold41954 GLEAN mRNA 128673 136852 1 + . ID=CGI_10005855; scaffold41954 WUBlastX LINE_RTE-X 130201 130344 30 - . . scaffold41954 WUBlastX LINE_RTE-X 130243 130335 34 - . . scaffold41954 WUBlastX LINE_RTE-X 130350 130490 25 - . . scaffold41954 WUBlastX LINE_RTE-X 130353 130460 48 - . . scaffold41954 WUBlastX LINE_RTE-X 130568 131029 80 - . . scaffold41954 WUBlastX LINE_RTE-X 130736 130936 122 - . . scaffold41954 WUBlastX LINE_Rex-Babar 131187 133022 35 - . . scaffold41954 WUBlastX LINE_RTE-X 131364 132887 583 - . . scaffold41954 TRF Tandem_Repeat 136640 136685 92 + . . scaffold41968 GLEAN promoter 1 575 0.287765 + . ID=CGI_10005864; scaffold41968 GLEAN mRNA 576 35149 0.287765 + . ID=CGI_10005864; scaffold41968 TRF Tandem_Repeat 13464 13926 809 + . . scaffold41968 TRF Tandem_Repeat 36957 37018 97 + . . scaffold41968 GLEAN mRNA 37707 39917 0.999984 - . ID=CGI_10005865; scaffold41968 GLEAN promoter 39918 40917 0.999984 - . ID=CGI_10005865; scaffold41968 TRF Tandem_Repeat 41605 41651 87 + . . scaffold41968 GLEAN promoter 45511 46510 0.999943 + . ID=CGI_10005866; scaffold41968 GLEAN mRNA 46511 57418 0.999943 + . ID=CGI_10005866; scaffold41968 GLEAN mRNA 59751 65337 1 - . ID=CGI_10005867; scaffold41968 GLEAN promoter 64680 65679 1 + . ID=CGI_10005868; scaffold41968 GLEAN promoter 65338 66337 1 - . ID=CGI_10005867; scaffold41968 GLEAN mRNA 65680 72539 1 + . ID=CGI_10005868; scaffold41968 TRF Tandem_Repeat 72735 72802 127 + . . scaffold41968 GLEAN mRNA 75973 79274 0.889923 - . ID=CGI_10005869; scaffold41968 GLEAN promoter 79275 80274 0.889923 - . ID=CGI_10005869; scaffold41968 GLEAN promoter 79305 80304 0.763205 + . ID=CGI_10005870; scaffold41968 WUBlastX LINE_RTE-X 79440 79547 28 - . . scaffold41968 WUBlastX LINE_RTE-X 79544 79705 42 - . . scaffold41968 WUBlastX LINE_RTE-X 79568 79735 32 - . . scaffold41968 GLEAN mRNA 80305 97897 0.763205 + . ID=CGI_10005870; scaffold41968 TRF Tandem_Repeat 93580 93612 66 + . . scaffold41968 GLEAN promoter 97001 98000 0.558407 + . ID=CGI_10005871; scaffold41968 GLEAN mRNA 98001 98378 0.558407 + . ID=CGI_10005871; scaffold41968 GLEAN promoter 102847 103846 0.999083 + . ID=CGI_10005872; scaffold41968 GLEAN mRNA 103847 112793 0.999083 + . ID=CGI_10005872; scaffold41968 TRF Tandem_Repeat 107368 107463 77 + . . scaffold41968 GLEAN mRNA 112636 118112 0.999666 - . ID=CGI_10005873; scaffold41968 GLEAN promoter 118113 119112 0.999666 - . ID=CGI_10005873; scaffold41968 GLEAN mRNA 118327 130518 0.999349 - . ID=CGI_10005874; scaffold41968 TRF Tandem_Repeat 125749 125811 126 + . . scaffold41968 TRF Tandem_Repeat 129468 129535 136 + . . scaffold41968 GLEAN promoter 130519 131518 0.999349 - . ID=CGI_10005874; scaffold41968 TRF Tandem_Repeat 133012 133074 117 + . . scaffold41968 TRF Tandem_Repeat 134816 135013 225 + . . scaffold41968 TRF Tandem_Repeat 134818 135013 225 + . . scaffold41968 TRF Tandem_Repeat 135688 135925 260 + . . scaffold41968 TRF Tandem_Repeat 135697 135903 211 + . . scaffold41968 TRF Tandem_Repeat 137557 137635 158 + . . scaffold41968 TRF Tandem_Repeat 138343 138384 84 + . . scaffold41970 GLEAN promoter 1 600 1 + . ID=CGI_10005881; scaffold41970 GLEAN mRNA 601 13310 1 + . ID=CGI_10005881; scaffold41970 TRF Tandem_Repeat 4581 4634 108 + . . scaffold41970 TRF Tandem_Repeat 4634 4720 158 + . . scaffold41970 GLEAN mRNA 24536 41358 0.912364 - . ID=CGI_10005882; scaffold41970 TRF Tandem_Repeat 33181 33318 125 + . . scaffold41970 WUBlastX LINE_L1-Tx1 37629 38153 143 - . . scaffold41970 WUBlastX LINE_L1 37863 38303 51 - . . scaffold41970 GLEAN promoter 41359 42358 0.912364 - . ID=CGI_10005882; scaffold41970 TRF Tandem_Repeat 42353 42913 368 + . . scaffold41970 GLEAN mRNA 48727 49047 0.333013 - . ID=CGI_10005883; scaffold41970 GLEAN promoter 49048 50047 0.333013 - . ID=CGI_10005883; scaffold41970 GLEAN mRNA 49595 52473 0.984832 - . ID=CGI_10005884; scaffold41970 GLEAN promoter 52474 53473 0.984832 - . ID=CGI_10005884; scaffold41970 GLEAN promoter 52579 53578 0.833981 + . ID=CGI_10005885; scaffold41970 GLEAN mRNA 53579 60911 0.833981 + . ID=CGI_10005885; scaffold41970 TRF Tandem_Repeat 59190 59360 333 + . . scaffold41970 GLEAN mRNA 62145 68126 0.863497 - . ID=CGI_10005886; scaffold41970 TRF Tandem_Repeat 67574 67634 97 + . . scaffold41970 GLEAN promoter 68127 69126 0.863497 - . ID=CGI_10005886; scaffold41970 GLEAN promoter 68893 69892 0.996819 + . ID=CGI_10005887; scaffold41970 GLEAN mRNA 69893 74463 0.996819 + . ID=CGI_10005887; scaffold41970 WUBlastX LINE_RTE-BovB 70760 71140 33 + . . scaffold41970 GLEAN mRNA 74589 94521 0.999949 - . ID=CGI_10005888; scaffold41970 TRF Tandem_Repeat 83400 83428 58 + . . scaffold41970 GLEAN promoter 93852 94851 0.998245 + . ID=CGI_10005889; scaffold41970 GLEAN promoter 94522 95521 0.999949 - . ID=CGI_10005888; scaffold41970 GLEAN mRNA 94852 100231 0.998245 + . ID=CGI_10005889; scaffold41970 GLEAN mRNA 101598 132467 0.999544 - . ID=CGI_10005890; scaffold41970 TRF Tandem_Repeat 112668 112696 58 + . . scaffold41970 GLEAN promoter 132468 133467 0.999544 - . ID=CGI_10005890; scaffold41970 GLEAN promoter 133398 134397 1 + . ID=CGI_10005891; scaffold41970 GLEAN mRNA 134398 134721 1 + . ID=CGI_10005891; scaffold41972 TRF Tandem_Repeat 3739 3776 76 + . . scaffold41972 GLEAN promoter 5456 6455 0.637196 + . ID=CGI_10005856; scaffold41972 GLEAN mRNA 6456 16336 0.637196 + . ID=CGI_10005856; scaffold41972 TRF Tandem_Repeat 11006 11931 1270 + . . scaffold41972 TRF Tandem_Repeat 19540 19781 274 + . . scaffold41972 TRF Tandem_Repeat 21561 21642 66 + . . scaffold41972 GLEAN promoter 22928 23927 0.483796 + . ID=CGI_10005857; scaffold41972 GLEAN mRNA 23928 33752 0.483796 + . ID=CGI_10005857; scaffold41972 TRF Tandem_Repeat 28133 28198 132 + . . scaffold41972 TRF Tandem_Repeat 28196 28227 64 + . . scaffold41972 GLEAN promoter 32970 33969 0.737819 + . ID=CGI_10005858; scaffold41972 GLEAN mRNA 33970 36153 0.737819 + . ID=CGI_10005858; scaffold41972 TRF Tandem_Repeat 34234 34678 239 + . . scaffold41972 GLEAN promoter 47369 48368 0.677951 + . ID=CGI_10005859; scaffold41972 GLEAN mRNA 48369 55414 0.677951 + . ID=CGI_10005859; scaffold41972 GLEAN promoter 78510 79509 0.89236 + . ID=CGI_10005860; scaffold41972 GLEAN mRNA 79510 89302 0.89236 + . ID=CGI_10005860; scaffold41972 TRF Tandem_Repeat 80470 80562 132 + . . scaffold41972 TRF Tandem_Repeat 85186 85228 58 + . . scaffold41972 GLEAN promoter 94224 95223 0.240877 + . ID=CGI_10005862; scaffold41972 GLEAN mRNA 94621 99839 0.620107 - . ID=CGI_10005861; scaffold41972 GLEAN mRNA 95224 139840 0.240877 + . ID=CGI_10005862; scaffold41972 WUBlastX LINE_L1 97737 97892 56 - . . scaffold41972 GLEAN promoter 99840 100839 0.620107 - . ID=CGI_10005861; scaffold41972 TRF Tandem_Repeat 107822 107932 170 + . . scaffold41972 TRF Tandem_Repeat 127259 127295 74 + . . scaffold41972 TRF Tandem_Repeat 127760 127825 109 + . . scaffold41972 TRF Tandem_Repeat 130105 130318 412 + . . scaffold41972 TRF Tandem_Repeat 131304 131986 909 + . . scaffold41972 TRF Tandem_Repeat 138230 138270 82 + . . scaffold41974 GLEAN mRNA 275 36868 0.405305 - . ID=CGI_10005902; scaffold41974 TRF Tandem_Repeat 4978 5062 152 + . . scaffold41974 TRF Tandem_Repeat 26164 26212 89 + . . scaffold41974 WUBlastX LINE_RTE-BovB 30787 30930 79 + . . scaffold41974 WUBlastX LINE_RTE-BovB 30891 31721 72 + . . scaffold41974 WUBlastX LINE_RTE-BovB 30903 31523 283 + . . scaffold41974 GLEAN promoter 36869 37868 0.405305 - . ID=CGI_10005902; scaffold41974 GLEAN promoter 39165 40164 0.792496 + . ID=CGI_10005903; scaffold41974 GLEAN mRNA 40165 73936 0.792496 + . ID=CGI_10005903; scaffold41974 TRF Tandem_Repeat 49227 49259 57 + . . scaffold41974 TRF Tandem_Repeat 55712 55766 110 + . . scaffold41974 GLEAN promoter 74674 75673 0.300707 + . ID=CGI_10005904; scaffold41974 GLEAN mRNA 75674 89547 0.300707 + . ID=CGI_10005904; scaffold41974 GLEAN mRNA 81670 82511 0.99998 - . ID=CGI_10005905; scaffold41974 GLEAN promoter 82512 83511 0.99998 - . ID=CGI_10005905; scaffold41974 TRF Tandem_Repeat 83192 83255 128 + . . scaffold41974 TRF Tandem_Repeat 88456 88511 112 + . . scaffold41974 TRF Tandem_Repeat 89035 89088 63 + . . scaffold41974 GLEAN promoter 90441 91440 0.987142 + . ID=CGI_10005906; scaffold41974 GLEAN mRNA 91441 113257 0.987142 + . ID=CGI_10005906; scaffold41974 TRF Tandem_Repeat 95767 95820 65 + . . scaffold41974 TRF Tandem_Repeat 97572 98467 1031 + . . scaffold41974 TRF Tandem_Repeat 100578 100639 124 + . . scaffold41974 GLEAN mRNA 117535 127208 0.999999 - . ID=CGI_10005907; scaffold41974 GLEAN promoter 127209 128208 0.999999 - . ID=CGI_10005907; scaffold41974 TRF Tandem_Repeat 128121 128975 1151 + . . scaffold41974 TRF Tandem_Repeat 136127 136151 50 + . . scaffold41982 WUBlastX LINE_CR1-L2 614 1087 45 - . . scaffold41982 WUBlastX LINE_CR1-L2 692 1105 88 - . . scaffold41982 WUBlastX LINE_L2 761 1087 114 - . . scaffold41982 WUBlastX LINE_L2 1063 1437 93 - . . scaffold41982 WUBlastX LINE_L2 1138 1422 198 - . . scaffold41982 WUBlastX LINE_L2 1536 2927 496 - . . scaffold41982 WUBlastX LINE_L2 2941 3387 49 - . . scaffold41982 WUBlastX LINE_L2 3037 3417 91 - . . scaffold41982 WUBlastX LINE_L2 3401 3538 40 - . . scaffold41982 GLEAN promoter 8317 9316 0.634216 + . ID=CGI_10005969; scaffold41982 GLEAN mRNA 9317 30754 0.634216 + . ID=CGI_10005969; scaffold41982 TRF Tandem_Repeat 10259 10286 56 + . . scaffold41982 TRF Tandem_Repeat 20250 20284 54 + . . scaffold41982 TRF Tandem_Repeat 28693 28913 193 + . . scaffold41982 WUBlastX LINE_L1-Tx1 43884 44042 43 + . . scaffold41982 WUBlastX LINE_L1-Tx1 43920 44042 49 + . . scaffold41982 WUBlastX LINE_L1 44179 44262 27 + . . scaffold41982 WUBlastX LINE_L1 44197 44289 38 + . . scaffold41982 WUBlastX LINE_L1 44212 44292 54 + . . scaffold41982 WUBlastX LINE_L1-Tx1 44486 44533 23 + . . scaffold41982 WUBlastX LINE_L1 44517 44744 23 + . . scaffold41982 GLEAN promoter 44828 45827 0.999068 + . ID=CGI_10005970; scaffold41982 GLEAN mRNA 45828 46883 0.999068 + . ID=CGI_10005970; scaffold41982 TRF Tandem_Repeat 51125 51864 912 + . . scaffold41982 GLEAN promoter 51221 52220 0.998699 + . ID=CGI_10005971; scaffold41982 GLEAN mRNA 52221 67539 0.998699 + . ID=CGI_10005971; scaffold41982 TRF Tandem_Repeat 61525 62231 484 + . . scaffold41982 TRF Tandem_Repeat 61533 62231 439 + . . scaffold41982 TRF Tandem_Repeat 63794 63823 51 + . . scaffold41982 TRF Tandem_Repeat 68157 68196 80 + . . scaffold41982 GLEAN mRNA 68195 75399 0.820931 - . ID=CGI_10005972; scaffold41982 TRF Tandem_Repeat 72054 72091 76 + . . scaffold41982 GLEAN promoter 75400 76399 0.820931 - . ID=CGI_10005972; scaffold41982 GLEAN promoter 75839 76838 0.530832 + . ID=CGI_10005973; scaffold41982 GLEAN mRNA 76839 81227 0.530832 + . ID=CGI_10005973; scaffold41982 GLEAN promoter 87405 88404 1 + . ID=CGI_10005974; scaffold41982 GLEAN mRNA 88405 96374 1 + . ID=CGI_10005974; scaffold41982 TRF Tandem_Repeat 91501 91552 104 + . . scaffold41982 GLEAN promoter 97215 98214 0.990769 + . ID=CGI_10005975; scaffold41982 GLEAN mRNA 98215 103908 0.990769 + . ID=CGI_10005975; scaffold41982 GLEAN promoter 103894 104893 0.999351 + . ID=CGI_10005976; scaffold41982 GLEAN mRNA 104894 115084 0.999351 + . ID=CGI_10005976; scaffold41982 TRF Tandem_Repeat 109470 109518 98 + . . scaffold41982 GLEAN promoter 116469 117468 1 + . ID=CGI_10005977; scaffold41982 GLEAN mRNA 117469 119002 1 + . ID=CGI_10005977; scaffold41982 GLEAN mRNA 121431 124828 1 - . ID=CGI_10005978; scaffold41982 GLEAN promoter 124829 125828 1 - . ID=CGI_10005978; scaffold41982 TRF Tandem_Repeat 126075 126110 56 + . . scaffold41982 TRF Tandem_Repeat 127262 127386 135 + . . scaffold41982 TRF Tandem_Repeat 127471 127588 137 + . . scaffold41988 GLEAN mRNA 3017 6473 1 - . ID=CGI_10005892; scaffold41988 GLEAN promoter 6458 7457 0.991247 + . ID=CGI_10005893; scaffold41988 GLEAN promoter 6474 7473 1 - . ID=CGI_10005892; scaffold41988 GLEAN mRNA 7458 11334 0.991247 + . ID=CGI_10005893; scaffold41988 GLEAN mRNA 13947 15305 0.998726 - . ID=CGI_10005894; scaffold41988 GLEAN promoter 15306 16305 0.998726 - . ID=CGI_10005894; scaffold41988 GLEAN promoter 24050 25049 0.999661 + . ID=CGI_10005895; scaffold41988 GLEAN mRNA 25050 26120 0.999661 + . ID=CGI_10005895; scaffold41988 TRF Tandem_Repeat 34767 34801 70 + . . scaffold41988 TRF Tandem_Repeat 38548 38583 72 + . . scaffold41988 GLEAN promoter 47517 48516 0.995871 + . ID=CGI_10005896; scaffold41988 TRF Tandem_Repeat 47607 47655 89 + . . scaffold41988 GLEAN mRNA 48517 49566 0.995871 + . ID=CGI_10005896; scaffold41988 GLEAN promoter 55494 56493 0.69447 + . ID=CGI_10005897; scaffold41988 GLEAN mRNA 56494 57603 0.69447 + . ID=CGI_10005897; scaffold41988 GLEAN promoter 59633 60632 0.999372 + . ID=CGI_10005898; scaffold41988 GLEAN mRNA 60633 61739 0.999372 + . ID=CGI_10005898; scaffold41988 GLEAN promoter 76890 77889 0.998607 + . ID=CGI_10005899; scaffold41988 GLEAN mRNA 77890 83020 0.998607 + . ID=CGI_10005899; scaffold41988 GLEAN mRNA 84903 92597 0.354772 - . ID=CGI_10005900; scaffold41988 GLEAN promoter 92598 93597 0.354772 - . ID=CGI_10005900; scaffold41988 WUBlastX DNA_PiggyBac 94520 94807 43 + . . scaffold41988 WUBlastX DNA_PiggyBac 94568 94819 71 + . . scaffold41988 WUBlastX DNA_PiggyBac 94807 94884 24 + . . scaffold41988 WUBlastX DNA_PiggyBac 95354 95485 28 + . . scaffold41988 WUBlastX DNA_PiggyBac 96260 96442 94 + . . scaffold41988 WUBlastX DNA_PiggyBac 96260 96553 66 + . . scaffold41988 WUBlastX DNA_PiggyBac 97004 97144 57 + . . scaffold41988 WUBlastX DNA_PiggyBac 97016 97126 84 + . . scaffold41988 WUBlastX DNA_PiggyBac 97016 97171 48 + . . scaffold41988 WUBlastX DNA_PiggyBac 97016 97261 46 + . . scaffold41988 WUBlastX DNA_PiggyBac 97589 97912 49 + . . scaffold41988 WUBlastX DNA_PiggyBac 97589 97825 74 + . . scaffold41988 WUBlastX DNA_PiggyBac 97604 97795 114 + . . scaffold41988 WUBlastX DNA_PiggyBac 97879 98418 142 + . . scaffold41988 TRF Tandem_Repeat 111760 111811 68 + . . scaffold41988 TRF Tandem_Repeat 111769 111818 82 + . . scaffold41988 TRF Tandem_Repeat 111785 111818 50 + . . scaffold41988 TRF Tandem_Repeat 123649 124729 1561 + . . scaffold41988 GLEAN promoter 126321 127320 0.999973 + . ID=CGI_10005901; scaffold41988 GLEAN mRNA 127321 131070 0.999973 + . ID=CGI_10005901; scaffold41988 TRF Tandem_Repeat 133268 133322 74 + . . scaffold41988 TRF Tandem_Repeat 133495 134520 1517 + . . scaffold41988 TRF Tandem_Repeat 139036 139082 94 + . . scaffold41994 GLEAN mRNA 1304 14303 1 - . ID=CGI_10005875; scaffold41994 GLEAN promoter 14304 15303 1 - . ID=CGI_10005875; scaffold41994 GLEAN promoter 15985 16984 0.999998 + . ID=CGI_10005876; scaffold41994 GLEAN mRNA 16985 17467 0.999998 + . ID=CGI_10005876; scaffold41994 GLEAN mRNA 20349 30311 0.999988 - . ID=CGI_10005877; scaffold41994 GLEAN promoter 30312 31311 0.999988 - . ID=CGI_10005877; scaffold41994 GLEAN mRNA 30614 61131 0.777342 - . ID=CGI_10005878; scaffold41994 GLEAN promoter 61132 62131 0.777342 - . ID=CGI_10005878; scaffold41994 GLEAN mRNA 68189 131553 0.997969 - . ID=CGI_10005879; scaffold41994 GLEAN promoter 131554 132553 0.997969 - . ID=CGI_10005879; scaffold41994 GLEAN mRNA 131599 139912 0.999949 - . ID=CGI_10005880; scaffold41994 GLEAN promoter 139913 140848 0.999949 - . ID=CGI_10005880; scaffold41998 GLEAN mRNA 2118 5690 0.998942 - . ID=CGI_10005908; scaffold41998 TRF Tandem_Repeat 2588 3358 953 + . . scaffold41998 TRF Tandem_Repeat 2588 2770 271 + . . scaffold41998 TRF Tandem_Repeat 2719 2978 197 + . . scaffold41998 TRF Tandem_Repeat 2769 2914 222 + . . scaffold41998 TRF Tandem_Repeat 2912 3358 774 + . . scaffold41998 TRF Tandem_Repeat 3673 3736 128 + . . scaffold41998 TRF Tandem_Repeat 3808 3834 54 + . . scaffold41998 TRF Tandem_Repeat 4964 4998 70 + . . scaffold41998 GLEAN promoter 5691 6690 0.998942 - . ID=CGI_10005908; scaffold41998 GLEAN mRNA 5813 7695 0.995 - . ID=CGI_10005909; scaffold41998 TRF Tandem_Repeat 6394 6418 50 + . . scaffold41998 GLEAN promoter 7696 8695 0.995 - . ID=CGI_10005909; scaffold41998 GLEAN mRNA 8059 10834 0.998027 - . ID=CGI_10005910; scaffold41998 GLEAN promoter 10835 11834 0.998027 - . ID=CGI_10005910; scaffold41998 TRF Tandem_Repeat 10841 11033 121 + . . scaffold41998 TRF Tandem_Repeat 11021 11424 388 + . . scaffold41998 TRF Tandem_Repeat 20106 20140 63 + . . scaffold41998 WUBlastX LINE_RTE-BovB 20608 22071 1050 - . . scaffold41998 WUBlastX LINE_RTE-X 21259 22215 275 - . . scaffold41998 WUBlastX LINE_L1 22749 22994 23 - . . scaffold41998 WUBlastX LINE_CR1 22806 22964 26 - . . scaffold41998 WUBlastX LINE_RTE-BovB 22854 24218 1035 - . . scaffold41998 TRF Tandem_Repeat 26824 26867 63 + . . scaffold41998 GLEAN mRNA 32389 44944 0.999949 - . ID=CGI_10005911; scaffold41998 TRF Tandem_Repeat 41231 41262 64 + . . scaffold41998 WUBlastX LINE_RTE-BovB 41658 42056 297 - . . scaffold41998 WUBlastX LINE_RTE-BovB 42038 44089 1798 - . . scaffold41998 GLEAN promoter 44945 45944 0.999949 - . ID=CGI_10005911; scaffold41998 GLEAN mRNA 51684 55339 1 - . ID=CGI_10005912; scaffold41998 GLEAN promoter 55008 56007 0.810873 + . ID=CGI_10005913; scaffold41998 GLEAN promoter 55340 56339 1 - . ID=CGI_10005912; scaffold41998 GLEAN mRNA 56008 87098 0.810873 + . ID=CGI_10005913; scaffold41998 GLEAN mRNA 90606 99007 0.648527 - . ID=CGI_10005914; scaffold41998 TRF Tandem_Repeat 94177 94239 126 + . . scaffold41998 GLEAN promoter 99008 100007 0.648527 - . ID=CGI_10005914; scaffold41998 TRF Tandem_Repeat 101587 101679 125 + . . scaffold41998 TRF Tandem_Repeat 102624 102698 150 + . . scaffold41998 TRF Tandem_Repeat 102758 102789 64 + . . scaffold41998 GLEAN promoter 106642 107641 0.544402 + . ID=CGI_10005915; scaffold41998 GLEAN mRNA 107642 122323 0.544402 + . ID=CGI_10005915; scaffold41998 TRF Tandem_Repeat 116075 116112 51 + . . scaffold41998 GLEAN mRNA 116331 127159 0.683375 - . ID=CGI_10005916; scaffold41998 TRF Tandem_Repeat 120320 120344 50 + . . scaffold41998 GLEAN promoter 127160 128159 0.683375 - . ID=CGI_10005916; scaffold41998 GLEAN promoter 132193 133192 0.999999 + . ID=CGI_10005917; scaffold41998 GLEAN mRNA 133193 133783 0.999999 + . ID=CGI_10005917; scaffold41998 GLEAN promoter 137245 138244 0.999661 + . ID=CGI_10005918; scaffold41998 GLEAN mRNA 138245 141080 0.999661 + . ID=CGI_10005918; scaffold42 TRF Tandem_Repeat 2598 2651 99 + . . scaffold42 WUBlastX LTR_Gypsy 5250 5897 61 + . . scaffold42 WUBlastX LTR_Gypsy-Cigr 5376 6041 246 + . . scaffold42 GLEAN promoter 6690 7689 0.69563 + . ID=CGI_10018904; scaffold42 WUBlastX LTR_Gypsy 7555 7653 21 + . . scaffold42 GLEAN mRNA 7690 7884 0.69563 + . ID=CGI_10018904; scaffold42 WUBlastX LTR_Gypsy 7895 9433 512 + . . scaffold42 WUBlastX LTR_Gypsy 8771 9643 261 + . . scaffold42 WUBlastX LTR_Gypsy 9746 9805 21 + . . scaffold42 WUBlastX LTR_ERV1 10030 10125 21 + . . scaffold42 WUBlastX LTR_ERVL 10230 10313 22 + . . scaffold42 TRF Tandem_Repeat 10366 10421 60 + . . scaffold42 WUBlastX DNA_TcMar-Marin 11170 11340 28 + . . scaffold42 WUBlastX DNA_TcMar-Marin 11196 11627 66 + . . scaffold42 WUBlastX DNA_TcMar-Marin 11328 11708 132 + . . scaffold42 WUBlastX DNA_TcMar-Marin 11638 11850 82 + . . scaffold42 WUBlastX DNA_TcMar-Marin 12032 12436 235 + . . scaffold42 TRF Tandem_Repeat 19188 19217 51 + . . scaffold42 TRF Tandem_Repeat 41333 41376 70 + . . scaffold42 TRF Tandem_Repeat 57004 57035 57 + . . scaffold42 GLEAN mRNA 77522 83143 0.592597 - . ID=CGI_10018905; scaffold42 WUBlastX LTR_Ngaro 78946 79053 59 - . . scaffold42 WUBlastX LTR_Ngaro 78976 79422 200 - . . scaffold42 WUBlastX LTR_Ngaro 79054 79422 234 - . . scaffold42 WUBlastX LTR_Ngaro 79446 80180 481 - . . scaffold42 WUBlastX LTR_Ngaro 80174 80482 82 - . . scaffold42 WUBlastX LTR_Ngaro 80430 80753 32 - . . scaffold42 WUBlastX LTR_Ngaro 80747 81298 130 - . . scaffold42 TRF Tandem_Repeat 81694 82354 1035 + . . scaffold42 GLEAN promoter 83144 84143 0.592597 - . ID=CGI_10018905; scaffold42 TRF Tandem_Repeat 83740 83777 76 + . . scaffold42 TRF Tandem_Repeat 85484 85594 168 + . . scaffold42 WUBlastX LTR_Gypsy 93974 94141 25 - . . scaffold42 WUBlastX LTR_Gypsy 94046 94786 185 - . . scaffold42 TRF Tandem_Repeat 100331 100373 86 + . . scaffold42 WUBlastX LTR_Gypsy 103016 104863 1105 + . . scaffold42 WUBlastX LTR_Gypsy 104804 106291 953 + . . scaffold42 TRF Tandem_Repeat 108387 108440 99 + . . scaffold42 TRF Tandem_Repeat 108913 108966 108 + . . scaffold42 TRF Tandem_Repeat 115081 115191 177 + . . scaffold42 TRF Tandem_Repeat 115331 115509 204 + . . scaffold42 TRF Tandem_Repeat 115844 115887 79 + . . scaffold42 GLEAN promoter 123857 124856 0.593383 + . ID=CGI_10018906; scaffold42 GLEAN mRNA 124857 125838 0.593383 + . ID=CGI_10018906; scaffold42 GLEAN promoter 128318 129317 0.999999 + . ID=CGI_10018907; scaffold42 GLEAN mRNA 129318 132094 0.999999 + . ID=CGI_10018907; scaffold42 GLEAN mRNA 131872 135849 1 - . ID=CGI_10018908; scaffold42 TRF Tandem_Repeat 132284 132343 111 + . . scaffold42 TRF Tandem_Repeat 132780 133201 470 + . . scaffold42 GLEAN promoter 135850 136849 1 - . ID=CGI_10018908; scaffold42 GLEAN promoter 137685 138684 0.994166 + . ID=CGI_10018909; scaffold42 GLEAN mRNA 138685 159903 0.994166 + . ID=CGI_10018909; scaffold42 TRF Tandem_Repeat 149491 150292 1145 + . . scaffold42 TRF Tandem_Repeat 150552 151169 701 + . . scaffold42 GLEAN promoter 162165 163164 0.99315 + . ID=CGI_10018910; scaffold42 GLEAN mRNA 163165 180850 0.99315 + . ID=CGI_10018910; scaffold42 TRF Tandem_Repeat 170755 171168 600 + . . scaffold42 TRF Tandem_Repeat 171727 172252 456 + . . scaffold42 GLEAN mRNA 197902 198342 1 - . ID=CGI_10018911; scaffold42 GLEAN promoter 198343 199342 1 - . ID=CGI_10018911; scaffold42 TRF Tandem_Repeat 200369 200416 57 + . . scaffold42 GLEAN promoter 203584 204583 0.545569 + . ID=CGI_10018912; scaffold42 TRF Tandem_Repeat 204167 204225 118 + . . scaffold42 GLEAN mRNA 204584 223955 0.545569 + . ID=CGI_10018912; scaffold42 WUBlastX LINE_CR1 205173 205307 31 + . . scaffold42 WUBlastX LINE_CR1 205224 205319 37 + . . scaffold42 WUBlastX LINE_CR1 205233 205313 46 + . . scaffold42 WUBlastX LINE_L2 205236 205343 37 + . . scaffold42 WUBlastX LINE_RTE-X 205631 205819 91 - . . scaffold42 WUBlastX LINE_RTE-X 205807 206178 51 - . . scaffold42 WUBlastX LINE_L2 206167 206547 182 + . . scaffold42 WUBlastX LINE_L2 206552 206770 142 + . . scaffold42 WUBlastX LINE_CR1-L2 206555 206830 107 + . . scaffold42 WUBlastX LINE_L2 206806 206868 20 + . . scaffold42 WUBlastX LINE_L2 206841 207317 157 + . . scaffold42 TRF Tandem_Repeat 207724 207754 62 + . . scaffold42 TRF Tandem_Repeat 215910 215947 76 + . . scaffold42 TRF Tandem_Repeat 221514 221563 57 + . . scaffold42 TRF Tandem_Repeat 221517 221568 81 + . . scaffold42 TRF Tandem_Repeat 254300 254335 72 + . . scaffold42 WUBlastX LTR_Gypsy 265539 265619 20 - . . scaffold42 WUBlastX LTR_Gypsy 265654 265791 102 - . . scaffold42 GLEAN mRNA 271068 288546 0.828294 - . ID=CGI_10018913; scaffold42 TRF Tandem_Repeat 285043 285078 54 + . . scaffold42 GLEAN promoter 288547 289546 0.828294 - . ID=CGI_10018913; scaffold42 WUBlastX LINE_L1-Tx1 294235 294459 27 + . . scaffold42 WUBlastX LINE_L1-Tx1 294277 294558 23 + . . scaffold42 WUBlastX LINE_L1-Tx1 294277 294465 80 + . . scaffold42 TRF Tandem_Repeat 317019 317049 53 + . . scaffold42 WUBlastX LINE_Penelope 317525 317758 43 - . . scaffold42 TRF Tandem_Repeat 318474 318503 51 + . . scaffold42 TRF Tandem_Repeat 322838 322907 122 + . . scaffold42 GLEAN promoter 331652 332651 0.999998 + . ID=CGI_10018914; scaffold42 GLEAN mRNA 332652 334716 0.999998 + . ID=CGI_10018914; scaffold42 TRF Tandem_Repeat 358653 358696 88 + . . scaffold42 TRF Tandem_Repeat 358805 358852 73 + . . scaffold42 GLEAN promoter 365625 366624 0.99869 + . ID=CGI_10018915; scaffold42 GLEAN mRNA 366625 368271 0.99869 + . ID=CGI_10018915; scaffold42 WUBlastX DNA_Kolobok 367098 367319 41 + . . scaffold42 WUBlastX DNA_Kolobok 367449 367706 46 + . . scaffold42 WUBlastX DNA_Kolobok 367455 367664 87 + . . scaffold42 WUBlastX DNA_Kolobok 368276 368560 76 + . . scaffold42 TRF Tandem_Repeat 373561 373652 121 + . . scaffold42 TRF Tandem_Repeat 375176 375287 188 + . . scaffold42 TRF Tandem_Repeat 390003 390048 67 + . . scaffold42 TRF Tandem_Repeat 394277 394310 68 + . . scaffold42 WUBlastX DNA_hAT-Tip100 394565 395242 175 + . . scaffold42 GLEAN promoter 398179 399178 0.507782 + . ID=CGI_10018916; scaffold42 GLEAN mRNA 399179 413320 0.507782 + . ID=CGI_10018916; scaffold42 GLEAN mRNA 415585 420432 0.840334 - . ID=CGI_10018917; scaffold42 GLEAN promoter 420433 421432 0.840334 - . ID=CGI_10018917; scaffold42 GLEAN promoter 422462 423461 0.99996 + . ID=CGI_10018918; scaffold42 GLEAN mRNA 423462 430987 0.99996 + . ID=CGI_10018918; scaffold42 GLEAN promoter 434697 435696 0.66107 + . ID=CGI_10018919; scaffold42 GLEAN mRNA 435697 437485 0.66107 + . ID=CGI_10018919; scaffold42 GLEAN promoter 452378 453377 1 + . ID=CGI_10018920; scaffold42 GLEAN mRNA 453378 455117 1 + . ID=CGI_10018920; scaffold42 TRF Tandem_Repeat 457328 457430 93 + . . scaffold42 TRF Tandem_Repeat 458131 458300 80 + . . scaffold42 TRF Tandem_Repeat 458299 458654 230 + . . scaffold42 TRF Tandem_Repeat 458740 458825 93 + . . scaffold42 WUBlastX DNA_TcMar-Pogo 459295 460395 140 + . . scaffold42 WUBlastX DNA_TcMar-Pogo 459475 460758 239 + . . scaffold42 GLEAN mRNA 463969 484388 0.999675 - . ID=CGI_10018921; scaffold42 GLEAN promoter 484389 485388 0.999675 - . ID=CGI_10018921; scaffold42 TRF Tandem_Repeat 487641 487715 150 + . . scaffold42 GLEAN promoter 489329 490328 0.556118 + . ID=CGI_10018922; scaffold42 GLEAN mRNA 490329 506077 0.556118 + . ID=CGI_10018922; scaffold42 TRF Tandem_Repeat 504223 504719 552 + . . scaffold42 TRF Tandem_Repeat 504362 504598 186 + . . scaffold42 GLEAN promoter 505348 506347 0.999481 + . ID=CGI_10018923; scaffold42 GLEAN mRNA 506348 507294 0.999481 + . ID=CGI_10018923; scaffold42 GLEAN mRNA 511521 523008 0.999945 - . ID=CGI_10018924; scaffold42 TRF Tandem_Repeat 517232 517767 290 + . . scaffold42 TRF Tandem_Repeat 517232 517783 225 + . . scaffold42 TRF Tandem_Repeat 517409 517782 316 + . . scaffold42 TRF Tandem_Repeat 517510 517783 299 + . . scaffold42 TRF Tandem_Repeat 521252 521296 90 + . . scaffold42 GLEAN promoter 523009 524008 0.999945 - . ID=CGI_10018924; scaffold42 GLEAN mRNA 523128 541395 0.964037 - . ID=CGI_10018925; scaffold42 TRF Tandem_Repeat 527731 527871 103 + . . scaffold42 WUBlastX LINE_Penelope 540351 540467 31 + . . scaffold42 WUBlastX LINE_Penelope 540530 540874 20 + . . scaffold42 GLEAN promoter 541396 542395 0.964037 - . ID=CGI_10018925; scaffold42 TRF Tandem_Repeat 543043 543261 195 + . . scaffold42 WUBlastX LTR_Ngaro 543273 543998 158 + . . scaffold42 WUBlastX LTR_Ngaro 543399 543998 165 + . . scaffold42 WUBlastX LTR_Ngaro 544267 544563 94 + . . scaffold42 WUBlastX LTR_Ngaro 544342 544560 105 + . . scaffold42 GLEAN promoter 559944 560943 0.911359 + . ID=CGI_10018926; scaffold42 GLEAN mRNA 560944 563496 0.911359 + . ID=CGI_10018926; scaffold42022 TRF Tandem_Repeat 1099 1137 78 + . . scaffold42022 TRF Tandem_Repeat 1315 1367 79 + . . scaffold42022 TRF Tandem_Repeat 2243 2300 116 + . . scaffold42022 GLEAN promoter 2368 3367 0.998223 + . ID=CGI_10006048; scaffold42022 GLEAN mRNA 3368 12395 0.998223 + . ID=CGI_10006048; scaffold42022 TRF Tandem_Repeat 6406 6454 98 + . . scaffold42022 TRF Tandem_Repeat 6950 6998 98 + . . scaffold42022 TRF Tandem_Repeat 11296 11338 86 + . . scaffold42022 GLEAN mRNA 12310 51169 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX LINE_L2 33701 34054 106 + . . scaffold42022 WUBlastX LINE_L2 34057 34272 22 + . . scaffold42022 WUBlastX LINE_L2 34090 34206 22 + . . scaffold42022 WUBlastX DNA_IS4EU 43036 43983 218 + . . scaffold42022 WUBlastX DNA_IS4EU 43979 44179 111 + . . scaffold42022 WUBlastX DNA_IS4EU 44176 44361 141 + . . scaffold42022 WUBlastX DNA_Kolobok-IS4 44622 44783 53 - . . scaffold42022 WUBlastX DNA_IS4EU 44969 45058 30 - . . scaffold42022 WUBlastX DNA_IS4EU 45151 45198 21 - . . scaffold42022 WUBlastX DNA_IS4EU 45207 45305 32 - . . scaffold42022 WUBlastX DNA_IS4EU 45207 45335 29 - . . scaffold42022 GLEAN promoter 51170 52169 0.982585 - . ID=CGI_10006049; scaffold42022 WUBlastX LTR_Ngaro 51304 51549 75 - . . scaffold42022 WUBlastX LTR_Ngaro 51358 51564 75 - . . scaffold42022 GLEAN promoter 54332 55331 0.227083 + . ID=CGI_10006050; scaffold42022 GLEAN mRNA 55332 57563 0.227083 + . ID=CGI_10006050; scaffold42022 TRF Tandem_Repeat 64587 64626 62 + . . scaffold42022 TRF Tandem_Repeat 64659 65451 1151 + . . scaffold42022 GLEAN mRNA 68356 75388 0.996805 - . ID=CGI_10006051; scaffold42022 TRF Tandem_Repeat 68572 68625 56 + . . scaffold42022 GLEAN promoter 75389 76388 0.996805 - . ID=CGI_10006051; scaffold42022 TRF Tandem_Repeat 80452 80493 59 + . . scaffold42022 WUBlastX LINE_Penelope 87271 87471 28 - . . scaffold42022 WUBlastX LINE_Penelope 87596 88585 91 - . . scaffold42022 WUBlastX LINE_Penelope 87887 88711 104 - . . scaffold42022 WUBlastX LINE_Penelope 87989 88621 258 - . . scaffold42022 WUBlastX LINE_CR1-L2 89786 90085 70 + . . scaffold42022 WUBlastX LINE_L1 90484 90618 29 + . . scaffold42022 WUBlastX LINE_L1-Tx1 90505 90639 101 + . . scaffold42022 WUBlastX LINE_L1-Tx1 90657 91286 299 + . . scaffold42022 WUBlastX LINE_L1-Tx1 91321 91410 20 + . . scaffold42022 WUBlastX LINE_L1-Tx1 91391 91963 124 + . . scaffold42022 WUBlastX LINE_L1-Tx1 91906 92256 257 + . . scaffold42022 WUBlastX LINE_L1 93066 93380 120 + . . scaffold42022 WUBlastX LINE_L1-Tx1 93114 93380 195 + . . scaffold42022 WUBlastX LINE_L1-Tx1 93367 93621 53 + . . scaffold42022 WUBlastX LINE_Zorro 94508 94573 20 + . . scaffold42022 WUBlastX LTR_DIRS 94568 94972 161 - . . scaffold42022 WUBlastX LTR_DIRS? 94568 95116 132 - . . scaffold42022 WUBlastX LTR_DIRS? 95052 95327 70 - . . scaffold42022 WUBlastX LTR_DIRS 96214 98160 389 - . . scaffold42022 WUBlastX LTR_Gypsy 98116 98178 23 - . . scaffold42022 WUBlastX LTR_Gypsy 98246 98416 27 - . . scaffold42022 WUBlastX LTR_DIRS 98291 98440 50 - . . scaffold42022 WUBlastX DNA_TcMar-Tc1 107219 107422 128 - . . scaffold42022 WUBlastX DNA_TcMar-Tc1 107359 107619 85 - . . scaffold42022 WUBlastX DNA_TcMar-Tc1 107538 107984 140 - . . scaffold42022 WUBlastX DNA_TcMar-Tc1 107610 107996 192 - . . scaffold42022 WUBlastX LINE_Rex-Babar 109406 110014 27 + . . scaffold42022 WUBlastX LINE_CR1 109511 109969 60 + . . scaffold42022 WUBlastX LINE_L2 109586 110326 268 + . . scaffold42022 TRF Tandem_Repeat 111513 112608 1405 + . . scaffold42022 GLEAN promoter 112336 113335 0.328433 + . ID=CGI_10006052; scaffold42022 WUBlastX DNA_TcMar-Pogo 112871 112945 36 + . . scaffold42022 WUBlastX DNA_TcMar-Tigge 112898 113059 38 + . . scaffold42022 WUBlastX DNA_TcMar-Pogo 113065 113163 48 + . . scaffold42022 WUBlastX DNA_TcMar-Tigge 113071 113187 33 + . . scaffold42022 GLEAN mRNA 113336 117176 0.328433 + . ID=CGI_10006052; scaffold42022 WUBlastX LINE_L1 127545 127643 69 + . . scaffold42022 WUBlastX LTR_Pao 143065 143766 64 + . . scaffold42022 WUBlastX LTR_Pao 143518 143856 54 + . . scaffold42030 TRF Tandem_Repeat 2428 3474 983 + . . scaffold42030 GLEAN promoter 12387 13386 0.965896 + . ID=CGI_10006041; scaffold42030 GLEAN mRNA 13387 15078 0.965896 + . ID=CGI_10006041; scaffold42030 WUBlastX LTR_Gypsy 14224 14346 31 + . . scaffold42030 WUBlastX LTR_Gypsy 14680 14823 26 + . . scaffold42030 WUBlastX LTR_DIRS 15132 15947 495 + . . scaffold42030 WUBlastX LTR_DIRS 15767 16813 457 + . . scaffold42030 WUBlastX LTR_DIRS 15917 17002 448 + . . scaffold42030 WUBlastX LTR_DIRS 17053 17976 350 + . . scaffold42030 GLEAN promoter 26108 27107 0.672352 + . ID=CGI_10006042; scaffold42030 TRF Tandem_Repeat 26437 26532 97 + . . scaffold42030 GLEAN mRNA 27108 31368 0.672352 + . ID=CGI_10006042; scaffold42030 TRF Tandem_Repeat 30487 30532 92 + . . scaffold42030 GLEAN promoter 31335 32334 0.672352 + . ID=CGI_10006043; scaffold42030 GLEAN mRNA 32335 40645 0.672352 + . ID=CGI_10006043; scaffold42030 TRF Tandem_Repeat 36524 36576 106 + . . scaffold42030 GLEAN promoter 40814 41813 1 + . ID=CGI_10006044; scaffold42030 GLEAN mRNA 41814 43375 1 + . ID=CGI_10006044; scaffold42030 TRF Tandem_Repeat 44652 44812 188 + . . scaffold42030 TRF Tandem_Repeat 44652 44841 185 + . . scaffold42030 TRF Tandem_Repeat 47699 47762 92 + . . scaffold42030 TRF Tandem_Repeat 48238 48398 188 + . . scaffold42030 TRF Tandem_Repeat 48238 48427 185 + . . scaffold42030 TRF Tandem_Repeat 49366 49941 298 + . . scaffold42030 TRF Tandem_Repeat 49366 49953 305 + . . scaffold42030 TRF Tandem_Repeat 50052 50289 165 + . . scaffold42030 TRF Tandem_Repeat 52459 52499 82 + . . scaffold42030 GLEAN promoter 53164 54163 1 + . ID=CGI_10006045; scaffold42030 GLEAN mRNA 54164 60596 1 + . ID=CGI_10006045; scaffold42030 GLEAN promoter 72599 73598 0.98897 + . ID=CGI_10006046; scaffold42030 GLEAN mRNA 73599 103190 0.98897 + . ID=CGI_10006046; scaffold42030 WUBlastX LINE_CR1 77178 77630 79 + . . scaffold42030 WUBlastX LINE_RTE-X 77289 78563 223 + . . scaffold42030 WUBlastX LINE_RTE-X 78622 78963 52 + . . scaffold42030 WUBlastX LINE_CR1 78914 79243 80 + . . scaffold42030 WUBlastX LINE_RTE-X 78965 80656 719 + . . scaffold42030 TRF Tandem_Repeat 82142 82288 156 + . . scaffold42030 TRF Tandem_Repeat 82142 82308 145 + . . scaffold42030 TRF Tandem_Repeat 82945 83201 212 + . . scaffold42030 TRF Tandem_Repeat 82953 83229 396 + . . scaffold42030 TRF Tandem_Repeat 85038 85123 91 + . . scaffold42030 TRF Tandem_Repeat 86585 86712 94 + . . scaffold42030 TRF Tandem_Repeat 86640 86730 137 + . . scaffold42030 TRF Tandem_Repeat 93703 93748 92 + . . scaffold42030 TRF Tandem_Repeat 130058 130084 54 + . . scaffold42030 TRF Tandem_Repeat 130127 130152 52 + . . scaffold42030 GLEAN promoter 133355 134354 0.999211 + . ID=CGI_10006047; scaffold42030 GLEAN mRNA 134355 140815 0.999211 + . ID=CGI_10006047; scaffold42032 TRF Tandem_Repeat 12389 12442 99 + . . scaffold42032 TRF Tandem_Repeat 14351 14457 162 + . . scaffold42032 TRF Tandem_Repeat 16435 16462 56 + . . scaffold42032 TRF Tandem_Repeat 19092 19130 78 + . . scaffold42032 TRF Tandem_Repeat 19799 19848 82 + . . scaffold42032 GLEAN mRNA 22215 33681 0.999351 - . ID=CGI_10006013; scaffold42032 GLEAN promoter 33682 34681 0.999351 - . ID=CGI_10006013; scaffold42032 TRF Tandem_Repeat 35702 35794 150 + . . scaffold42032 TRF Tandem_Repeat 37366 37434 131 + . . scaffold42032 GLEAN promoter 38490 39489 0.999526 + . ID=CGI_10006014; scaffold42032 GLEAN mRNA 39490 85082 0.999526 + . ID=CGI_10006014; scaffold42032 TRF Tandem_Repeat 40627 40834 335 + . . scaffold42032 TRF Tandem_Repeat 45503 45678 129 + . . scaffold42032 TRF Tandem_Repeat 50710 50800 146 + . . scaffold42032 TRF Tandem_Repeat 50766 50855 99 + . . scaffold42032 TRF Tandem_Repeat 52298 52404 142 + . . scaffold42032 TRF Tandem_Repeat 55253 55313 122 + . . scaffold42032 TRF Tandem_Repeat 66408 66469 124 + . . scaffold42032 TRF Tandem_Repeat 68808 68856 91 + . . scaffold42032 GLEAN mRNA 88108 95511 0.999676 - . ID=CGI_10006015; scaffold42032 TRF Tandem_Repeat 89616 89672 114 + . . scaffold42032 TRF Tandem_Repeat 90013 90062 100 + . . scaffold42032 TRF Tandem_Repeat 91407 91452 83 + . . scaffold42032 TRF Tandem_Repeat 93541 93598 98 + . . scaffold42032 TRF Tandem_Repeat 94631 94670 80 + . . scaffold42032 TRF Tandem_Repeat 94819 94871 106 + . . scaffold42032 GLEAN promoter 95512 96511 0.999676 - . ID=CGI_10006015; scaffold42032 GLEAN mRNA 99276 104581 1 - . ID=CGI_10006016; scaffold42032 TRF Tandem_Repeat 100106 100157 63 + . . scaffold42032 TRF Tandem_Repeat 101606 101635 60 + . . scaffold42032 GLEAN promoter 104582 105581 1 - . ID=CGI_10006016; scaffold42032 TRF Tandem_Repeat 105668 105715 96 + . . scaffold42032 TRF Tandem_Repeat 113314 113352 78 + . . scaffold42032 TRF Tandem_Repeat 123937 123976 62 + . . scaffold42032 WUBlastX DNA_MuDR 124554 125579 366 - . . scaffold42032 WUBlastX LINE_RTE-BovB 125772 126032 34 - . . scaffold42032 WUBlastX LINE_RTE-BovB 126073 126219 44 - . . scaffold42032 WUBlastX DNA_IS4EU 138444 138824 20 + . . scaffold42032 WUBlastX DNA_Kolobok-IS4 138453 138758 33 + . . scaffold42032 WUBlastX DNA_IS4EU 139218 139478 88 + . . scaffold42032 WUBlastX DNA_IS4EU 139991 140248 129 - . . scaffold42032 WUBlastX DNA_IS4EU 140247 140429 119 - . . scaffold42032 WUBlastX DNA_IS4EU 140247 140474 109 - . . scaffold42032 WUBlastX DNA_Kolobok-IS4 140247 140543 94 - . . scaffold42032 WUBlastX DNA_Academ 140780 141052 20 - . . scaffold42040 GLEAN promoter 1 42 0.998047 + . ID=CGI_10006018; scaffold42040 GLEAN mRNA 43 8318 0.998047 + . ID=CGI_10006018; scaffold42040 GLEAN promoter 8461 9460 0.332487 + . ID=CGI_10006019; scaffold42040 GLEAN mRNA 9461 9908 0.332487 + . ID=CGI_10006019; scaffold42040 GLEAN mRNA 12535 17571 0.999409 - . ID=CGI_10006020; scaffold42040 GLEAN promoter 16914 17913 0.533477 + . ID=CGI_10006021; scaffold42040 TRF Tandem_Repeat 17454 17485 64 + . . scaffold42040 GLEAN promoter 17572 18571 0.999409 - . ID=CGI_10006020; scaffold42040 GLEAN mRNA 17914 18288 0.533477 + . ID=CGI_10006021; scaffold42040 GLEAN promoter 21027 22026 0.756266 + . ID=CGI_10006022; scaffold42040 GLEAN mRNA 22027 45927 0.756266 + . ID=CGI_10006022; scaffold42040 GLEAN promoter 45083 46082 0.693728 + . ID=CGI_10006023; scaffold42040 GLEAN mRNA 46083 53061 0.693728 + . ID=CGI_10006023; scaffold42040 TRF Tandem_Repeat 50257 50591 257 + . . scaffold42040 TRF Tandem_Repeat 51834 51896 56 + . . scaffold42040 GLEAN promoter 52101 53100 0.997652 + . ID=CGI_10006024; scaffold42040 GLEAN mRNA 53101 73350 0.997652 + . ID=CGI_10006024; scaffold42040 TRF Tandem_Repeat 76692 76727 72 + . . scaffold42040 GLEAN mRNA 82086 93404 1 - . ID=CGI_10006025; scaffold42040 TRF Tandem_Repeat 85968 85999 55 + . . scaffold42040 TRF Tandem_Repeat 88198 88539 283 + . . scaffold42040 TRF Tandem_Repeat 89571 89743 195 + . . scaffold42040 TRF Tandem_Repeat 89580 89731 90 + . . scaffold42040 TRF Tandem_Repeat 89596 89739 164 + . . scaffold42040 GLEAN promoter 93405 94404 1 - . ID=CGI_10006025; scaffold42040 GLEAN mRNA 93718 96356 1 - . ID=CGI_10006026; scaffold42040 GLEAN promoter 96357 97356 1 - . ID=CGI_10006026; scaffold42040 GLEAN mRNA 100856 104595 0.678522 - . ID=CGI_10006027; scaffold42040 GLEAN promoter 104596 105595 0.678522 - . ID=CGI_10006027; scaffold42040 TRF Tandem_Repeat 109087 109902 1137 + . . scaffold42040 TRF Tandem_Repeat 112020 112901 1294 + . . scaffold42040 TRF Tandem_Repeat 112034 113036 810 + . . scaffold42040 WUBlastX LINE_CR1-L2 117254 117547 32 - . . scaffold42040 WUBlastX LINE_L2 117317 117547 61 - . . scaffold42040 WUBlastX LINE_CR1-L2 117640 117804 26 - . . scaffold42040 GLEAN mRNA 119206 125442 1 - . ID=CGI_10006028; scaffold42040 GLEAN promoter 125443 126442 1 - . ID=CGI_10006028; scaffold42040 GLEAN mRNA 128341 140195 0.5 - . ID=CGI_10006029; scaffold42040 GLEAN promoter 140196 141195 0.5 - . ID=CGI_10006029; scaffold42046 GLEAN mRNA 5151 6174 0.971006 - . ID=CGI_10005997; scaffold42046 GLEAN promoter 6175 7174 0.971006 - . ID=CGI_10005997; scaffold42046 GLEAN promoter 9287 10286 0.999064 + . ID=CGI_10005998; scaffold42046 GLEAN mRNA 10287 12924 0.999064 + . ID=CGI_10005998; scaffold42046 WUBlastX LINE_RTE-X 13811 14869 323 - . . scaffold42046 WUBlastX LINE_RTE-X 14890 16650 833 - . . scaffold42046 GLEAN mRNA 18516 21149 1 - . ID=CGI_10005999; scaffold42046 TRF Tandem_Repeat 20888 20917 60 + . . scaffold42046 GLEAN promoter 21150 22149 1 - . ID=CGI_10005999; scaffold42046 TRF Tandem_Repeat 25674 25819 224 + . . scaffold42046 TRF Tandem_Repeat 26687 26752 54 + . . scaffold42046 TRF Tandem_Repeat 26691 26752 58 + . . scaffold42046 TRF Tandem_Repeat 28596 29113 736 + . . scaffold42046 TRF Tandem_Repeat 28596 29113 747 + . . scaffold42046 TRF Tandem_Repeat 28596 29113 730 + . . scaffold42046 TRF Tandem_Repeat 30360 30421 124 + . . scaffold42046 GLEAN mRNA 33436 36889 1 - . ID=CGI_10006000; scaffold42046 GLEAN promoter 36890 37889 1 - . ID=CGI_10006000; scaffold42046 GLEAN promoter 39975 40974 1 + . ID=CGI_10006001; scaffold42046 GLEAN mRNA 40975 47122 1 + . ID=CGI_10006001; scaffold42046 GLEAN promoter 50319 51318 1 + . ID=CGI_10006002; scaffold42046 GLEAN mRNA 51319 68145 1 + . ID=CGI_10006002; scaffold42046 TRF Tandem_Repeat 55211 56147 1086 + . . scaffold42046 TRF Tandem_Repeat 55211 56147 1142 + . . scaffold42046 WUBlastX LINE_RTE-BovB 57816 58520 61 + . . scaffold42046 WUBlastX LINE_L1-Tx1 57960 59843 592 + . . scaffold42046 TRF Tandem_Repeat 60824 60885 54 + . . scaffold42046 TRF Tandem_Repeat 60825 60885 61 + . . scaffold42046 TRF Tandem_Repeat 61055 62232 1728 + . . scaffold42046 TRF Tandem_Repeat 63829 64083 280 + . . scaffold42046 GLEAN mRNA 66824 100858 0.352028 - . ID=CGI_10006003; scaffold42046 WUBlastX DNA_Crypton 80825 81088 110 - . . scaffold42046 WUBlastX DNA_Crypton 81096 81380 95 - . . scaffold42046 TRF Tandem_Repeat 82160 82221 124 + . . scaffold42046 TRF Tandem_Repeat 83334 83391 116 + . . scaffold42046 TRF Tandem_Repeat 84494 84679 246 + . . scaffold42046 TRF Tandem_Repeat 86003 86099 78 + . . scaffold42046 TRF Tandem_Repeat 87456 87623 207 + . . scaffold42046 TRF Tandem_Repeat 91512 91846 609 + . . scaffold42046 TRF Tandem_Repeat 95288 95337 100 + . . scaffold42046 GLEAN promoter 100097 101096 0.585538 + . ID=CGI_10006004; scaffold42046 GLEAN promoter 100859 101858 0.352028 - . ID=CGI_10006003; scaffold42046 GLEAN mRNA 101097 112650 0.585538 + . ID=CGI_10006004; scaffold42046 TRF Tandem_Repeat 114956 115065 193 + . . scaffold42046 GLEAN mRNA 116089 119861 0.937847 - . ID=CGI_10006005; scaffold42046 GLEAN promoter 119862 120861 0.937847 - . ID=CGI_10006005; scaffold42046 TRF Tandem_Repeat 122957 122997 82 + . . scaffold42046 TRF Tandem_Repeat 123010 123059 55 + . . scaffold42046 TRF Tandem_Repeat 123010 123058 64 + . . scaffold42046 GLEAN mRNA 124017 125207 0.999661 - . ID=CGI_10006006; scaffold42046 GLEAN promoter 125208 126207 0.999661 - . ID=CGI_10006006; scaffold42046 GLEAN promoter 126494 127493 0.602928 + . ID=CGI_10006007; scaffold42046 GLEAN mRNA 127494 130148 0.602928 + . ID=CGI_10006007; scaffold42046 GLEAN mRNA 137585 142131 1 - . ID=CGI_10006008; scaffold42046 GLEAN promoter 142132 142519 1 - . ID=CGI_10006008; scaffold42048 GLEAN promoter 4266 5265 0.999984 + . ID=CGI_10006030; scaffold42048 GLEAN mRNA 5266 6936 0.999984 + . ID=CGI_10006030; scaffold42048 GLEAN mRNA 7125 26006 1 - . ID=CGI_10006031; scaffold42048 GLEAN promoter 7477 8476 1 + . ID=CGI_10006032; scaffold42048 GLEAN mRNA 8477 8629 1 + . ID=CGI_10006032; scaffold42048 GLEAN promoter 25258 26257 0.999415 + . ID=CGI_10006033; scaffold42048 GLEAN promoter 26007 27006 1 - . ID=CGI_10006031; scaffold42048 GLEAN mRNA 26258 35380 0.999415 + . ID=CGI_10006033; scaffold42048 GLEAN mRNA 42033 45917 0.937575 - . ID=CGI_10006034; scaffold42048 GLEAN promoter 45918 46917 0.937575 - . ID=CGI_10006034; scaffold42048 GLEAN promoter 48616 49615 0.999676 + . ID=CGI_10006035; scaffold42048 GLEAN mRNA 49616 67265 0.999676 + . ID=CGI_10006035; scaffold42048 GLEAN promoter 85914 86913 0.996612 + . ID=CGI_10006036; scaffold42048 GLEAN mRNA 86914 101996 0.996612 + . ID=CGI_10006036; scaffold42048 GLEAN promoter 101316 102315 0.996612 + . ID=CGI_10006037; scaffold42048 GLEAN mRNA 102316 103839 0.996612 + . ID=CGI_10006037; scaffold42048 GLEAN promoter 110015 111014 0.996562 + . ID=CGI_10006038; scaffold42048 GLEAN mRNA 111015 115329 0.996562 + . ID=CGI_10006038; scaffold42048 GLEAN promoter 115821 116820 1 + . ID=CGI_10006039; scaffold42048 GLEAN mRNA 116821 130996 1 + . ID=CGI_10006039; scaffold42048 GLEAN promoter 132025 133024 0.61441 + . ID=CGI_10006040; scaffold42048 GLEAN mRNA 133025 143239 0.61441 + . ID=CGI_10006040; scaffold42060 WUBlastX LINE_CR1-L2 1145 1492 83 + . . scaffold42060 TRF Tandem_Repeat 4551 5795 1731 + . . scaffold42060 GLEAN mRNA 8598 13674 1 - . ID=CGI_10005935; scaffold42060 GLEAN promoter 13675 14674 1 - . ID=CGI_10005935; scaffold42060 GLEAN promoter 14517 15516 1 + . ID=CGI_10005936; scaffold42060 GLEAN mRNA 15517 19359 1 + . ID=CGI_10005936; scaffold42060 GLEAN promoter 20777 21776 0.999624 + . ID=CGI_10005937; scaffold42060 GLEAN mRNA 21777 35879 0.999624 + . ID=CGI_10005937; scaffold42060 TRF Tandem_Repeat 25138 25189 95 + . . scaffold42060 TRF Tandem_Repeat 40166 40754 988 + . . scaffold42060 TRF Tandem_Repeat 56595 56620 52 + . . scaffold42060 WUBlastX LINE_L2 57983 58120 34 - . . scaffold42060 GLEAN mRNA 64960 68297 0.9602 - . ID=CGI_10005938; scaffold42060 GLEAN promoter 68298 69297 0.9602 - . ID=CGI_10005938; scaffold42060 WUBlastX LINE_L1 73235 73687 164 + . . scaffold42060 WUBlastX LINE_L2 73301 73777 120 + . . scaffold42060 WUBlastX LINE_Jockey 73792 73920 55 + . . scaffold42060 WUBlastX LINE_RTE-X 73819 75351 474 + . . scaffold42060 WUBlastX LINE_RTE-X 75337 75804 121 + . . scaffold42060 WUBlastX LINE_RTE-X 75436 76296 274 + . . scaffold42060 WUBlastX LINE_RTE-X 76284 76577 118 + . . scaffold42060 GLEAN promoter 77342 78341 1 + . ID=CGI_10005939; scaffold42060 GLEAN mRNA 78342 81051 1 + . ID=CGI_10005939; scaffold42060 GLEAN mRNA 83647 140642 0.999949 - . ID=CGI_10005940; scaffold42060 TRF Tandem_Repeat 87534 87638 192 + . . scaffold42060 TRF Tandem_Repeat 87933 87975 86 + . . scaffold42060 TRF Tandem_Repeat 88905 89671 961 + . . scaffold42060 TRF Tandem_Repeat 95641 95680 53 + . . scaffold42060 TRF Tandem_Repeat 96274 96657 498 + . . scaffold42060 TRF Tandem_Repeat 96274 96666 464 + . . scaffold42060 TRF Tandem_Repeat 96274 96666 354 + . . scaffold42060 TRF Tandem_Repeat 97315 97573 322 + . . scaffold42060 TRF Tandem_Repeat 97315 97573 340 + . . scaffold42060 TRF Tandem_Repeat 97315 97573 304 + . . scaffold42060 TRF Tandem_Repeat 112350 112393 88 + . . scaffold42060 TRF Tandem_Repeat 137269 137308 80 + . . scaffold42060 GLEAN promoter 140643 141642 0.999949 - . ID=CGI_10005940; scaffold42062 GLEAN promoter 3811 4810 1 + . ID=CGI_10006058; scaffold42062 GLEAN mRNA 4811 5481 1 + . ID=CGI_10006058; scaffold42062 TRF Tandem_Repeat 7155 7220 132 + . . scaffold42062 TRF Tandem_Repeat 10484 10531 87 + . . scaffold42062 TRF Tandem_Repeat 11268 11754 717 + . . scaffold42062 TRF Tandem_Repeat 11268 11754 640 + . . scaffold42062 TRF Tandem_Repeat 13468 13501 68 + . . scaffold42062 TRF Tandem_Repeat 15456 15486 62 + . . scaffold42062 GLEAN mRNA 17439 30222 0.999363 - . ID=CGI_10006059; scaffold42062 TRF Tandem_Repeat 18461 18956 411 + . . scaffold42062 TRF Tandem_Repeat 18594 18974 408 + . . scaffold42062 TRF Tandem_Repeat 28405 28445 82 + . . scaffold42062 GLEAN promoter 30223 31222 0.999363 - . ID=CGI_10006059; scaffold42062 GLEAN mRNA 30450 31554 0.991288 - . ID=CGI_10006060; scaffold42062 GLEAN promoter 31555 32554 0.991288 - . ID=CGI_10006060; scaffold42062 TRF Tandem_Repeat 32399 32715 564 + . . scaffold42062 GLEAN mRNA 39278 46139 1 - . ID=CGI_10006061; scaffold42062 GLEAN promoter 46140 47139 1 - . ID=CGI_10006061; scaffold42062 TRF Tandem_Repeat 49336 49444 96 + . . scaffold42062 TRF Tandem_Repeat 49593 49947 243 + . . scaffold42062 TRF Tandem_Repeat 49639 49947 318 + . . scaffold42062 TRF Tandem_Repeat 49965 50097 108 + . . scaffold42062 TRF Tandem_Repeat 56014 56517 638 + . . scaffold42062 GLEAN promoter 57685 58684 0.593391 + . ID=CGI_10006063; scaffold42062 GLEAN mRNA 58685 68832 0.593391 + . ID=CGI_10006063; scaffold42062 TRF Tandem_Repeat 63943 64000 116 + . . scaffold42062 GLEAN mRNA 70446 74719 0.998993 - . ID=CGI_10006064; scaffold42062 GLEAN promoter 74720 75719 0.998993 - . ID=CGI_10006064; scaffold42062 GLEAN mRNA 76819 88287 1 - . ID=CGI_10006065; scaffold42062 TRF Tandem_Repeat 78296 78854 527 + . . scaffold42062 TRF Tandem_Repeat 82856 84851 3272 + . . scaffold42062 TRF Tandem_Repeat 84941 84975 70 + . . scaffold42062 TRF Tandem_Repeat 85702 86251 829 + . . scaffold42062 GLEAN promoter 88288 89287 1 - . ID=CGI_10006065; scaffold42062 GLEAN mRNA 91775 98753 0.442026 - . ID=CGI_10006066; scaffold42062 TRF Tandem_Repeat 94284 94334 102 + . . scaffold42062 TRF Tandem_Repeat 94464 94509 92 + . . scaffold42062 TRF Tandem_Repeat 95249 96509 1348 + . . scaffold42062 GLEAN promoter 98754 99753 0.442026 - . ID=CGI_10006066; scaffold42062 GLEAN mRNA 99036 106361 0.396182 - . ID=CGI_10006067; scaffold42062 TRF Tandem_Repeat 99779 100981 1648 + . . scaffold42062 TRF Tandem_Repeat 103514 104629 1497 + . . scaffold42062 TRF Tandem_Repeat 105620 105651 64 + . . scaffold42062 GLEAN promoter 106362 107361 0.396182 - . ID=CGI_10006067; scaffold42062 WUBlastX LINE_RTE-BovB 112289 112465 67 + . . scaffold42062 WUBlastX LINE_RTE-BovB 112319 112492 179 + . . scaffold42062 GLEAN promoter 138232 139231 1 + . ID=CGI_10006068; scaffold42062 GLEAN mRNA 139232 139717 1 + . ID=CGI_10006068; scaffold42062 WUBlastX LINE_RTE-X 142848 143126 40 + . . scaffold42062 WUBlastX LINE_RTE-X 143125 143331 50 + . . scaffold42070 WUBlastX LINE_Proto2 114 749 60 - . . scaffold42070 TRF Tandem_Repeat 2116 2275 112 + . . scaffold42070 TRF Tandem_Repeat 2146 2291 118 + . . scaffold42070 TRF Tandem_Repeat 3295 3331 65 + . . scaffold42070 GLEAN promoter 6357 7356 0.45561 + . ID=CGI_10006075; scaffold42070 GLEAN mRNA 7357 26060 0.45561 + . ID=CGI_10006075; scaffold42070 TRF Tandem_Repeat 7535 7576 84 + . . scaffold42070 TRF Tandem_Repeat 7906 8743 1304 + . . scaffold42070 TRF Tandem_Repeat 9224 9985 969 + . . scaffold42070 TRF Tandem_Repeat 15182 15270 58 + . . scaffold42070 TRF Tandem_Repeat 22095 22130 72 + . . scaffold42070 TRF Tandem_Repeat 23770 23932 211 + . . scaffold42070 TRF Tandem_Repeat 26775 26932 253 + . . scaffold42070 GLEAN promoter 29853 30852 0.999897 + . ID=CGI_10006076; scaffold42070 GLEAN mRNA 30853 45527 0.999897 + . ID=CGI_10006076; scaffold42070 TRF Tandem_Repeat 39211 39262 95 + . . scaffold42070 TRF Tandem_Repeat 42016 43372 1431 + . . scaffold42070 TRF Tandem_Repeat 42458 43301 978 + . . scaffold42070 GLEAN promoter 44530 45529 0.999084 + . ID=CGI_10006077; scaffold42070 GLEAN mRNA 45530 50851 0.999084 + . ID=CGI_10006077; scaffold42070 TRF Tandem_Repeat 50037 50074 76 + . . scaffold42070 WUBlastX DNA_Sola 59900 60382 56 + . . scaffold42070 GLEAN promoter 62527 63526 0.466285 + . ID=CGI_10006078; scaffold42070 GLEAN mRNA 63527 73059 0.466285 + . ID=CGI_10006078; scaffold42070 WUBlastX LINE_L1 67594 68067 28 - . . scaffold42070 WUBlastX LINE_L1 67705 68070 70 - . . scaffold42070 WUBlastX LINE_L1 67834 68277 37 - . . scaffold42070 WUBlastX LINE_L1-Tx1 67837 68091 190 - . . scaffold42070 GLEAN promoter 76365 77364 1 + . ID=CGI_10006079; scaffold42070 GLEAN mRNA 77365 84894 1 + . ID=CGI_10006079; scaffold42070 TRF Tandem_Repeat 83677 83717 73 + . . scaffold42070 TRF Tandem_Repeat 84999 85030 64 + . . scaffold42070 TRF Tandem_Repeat 102311 102347 74 + . . scaffold42070 WUBlastX DNA_IS4EU 102714 103016 51 + . . scaffold42070 WUBlastX DNA_IS4EU 102864 103100 61 + . . scaffold42070 WUBlastX DNA_IS4EU 103779 103856 29 + . . scaffold42070 WUBlastX DNA_IS4EU 104391 105293 284 - . . scaffold42070 WUBlastX DNA_Kolobok-IS4 104406 105143 371 - . . scaffold42070 TRF Tandem_Repeat 107197 107266 87 + . . scaffold42070 TRF Tandem_Repeat 120507 120554 96 + . . scaffold42070 TRF Tandem_Repeat 125016 125058 86 + . . scaffold42070 TRF Tandem_Repeat 126150 126236 158 + . . scaffold42070 GLEAN mRNA 129526 140444 0.651135 - . ID=CGI_10006081; scaffold42070 GLEAN promoter 140445 141444 0.651135 - . ID=CGI_10006081; scaffold42076 WUBlastX DNA_Harbinger 5227 5478 44 - . . scaffold42076 GLEAN promoter 20711 21710 0.941371 + . ID=CGI_10006082; scaffold42076 GLEAN mRNA 21711 47909 0.941371 + . ID=CGI_10006082; scaffold42076 WUBlastX DNA_TcMar-Tc1 29210 29497 31 + . . scaffold42076 WUBlastX DNA_TcMar-Tc1 29547 30230 326 + . . scaffold42076 GLEAN mRNA 44914 48534 0.999383 - . ID=CGI_10006083; scaffold42076 GLEAN promoter 48535 49534 0.999383 - . ID=CGI_10006083; scaffold42076 TRF Tandem_Repeat 69312 69371 93 + . . scaffold42076 TRF Tandem_Repeat 73881 73940 102 + . . scaffold42076 GLEAN mRNA 85237 105642 0.589285 - . ID=CGI_10006084; scaffold42076 TRF Tandem_Repeat 101230 101405 133 + . . scaffold42076 TRF Tandem_Repeat 101353 101447 93 + . . scaffold42076 GLEAN promoter 105643 106642 0.589285 - . ID=CGI_10006084; scaffold42076 GLEAN mRNA 110436 110693 0.818603 - . ID=CGI_10006085; scaffold42076 GLEAN promoter 110694 111693 0.818603 - . ID=CGI_10006085; scaffold42076 GLEAN mRNA 115126 133902 0.850528 - . ID=CGI_10006086; scaffold42076 GLEAN promoter 133903 134902 0.850528 - . ID=CGI_10006086; scaffold42076 TRF Tandem_Repeat 137640 137680 82 + . . scaffold42076 TRF Tandem_Repeat 137871 137932 115 + . . scaffold42076 GLEAN mRNA 138926 144974 1 - . ID=CGI_10006087; scaffold42076 WUBlastX DNA_Harbinger 144347 144736 106 + . . scaffold42076 WUBlastX DNA_Harbinger 144395 144664 109 + . . scaffold42076 GLEAN promoter 144975 145082 1 - . ID=CGI_10006087; scaffold42086 WUBlastX LINE_RTE-X 524 667 63 - . . scaffold42086 TRF Tandem_Repeat 3442 3494 106 + . . scaffold42086 TRF Tandem_Repeat 7575 8060 681 + . . scaffold42086 TRF Tandem_Repeat 7624 8044 634 + . . scaffold42086 WUBlastX DNA_TcMar-Tc1 25560 25916 91 + . . scaffold42086 WUBlastX DNA_TcMar-Tc1 25874 26035 56 + . . scaffold42086 WUBlastX DNA_TcMar-Tc1 25961 26065 26 + . . scaffold42086 WUBlastX DNA_TcMar-Tc1 26065 26328 97 + . . scaffold42086 WUBlastX DNA_TcMar-Tc1 26071 26412 45 + . . scaffold42086 WUBlastX DNA_TcMar-Tc1 26372 26482 44 + . . scaffold42086 TRF Tandem_Repeat 28886 28935 84 + . . scaffold42086 TRF Tandem_Repeat 28887 28932 58 + . . scaffold42086 TRF Tandem_Repeat 41729 41870 176 + . . scaffold42086 TRF Tandem_Repeat 43388 43733 385 + . . scaffold42086 TRF Tandem_Repeat 44904 45201 343 + . . scaffold42086 TRF Tandem_Repeat 48457 48545 99 + . . scaffold42086 TRF Tandem_Repeat 48470 48558 115 + . . scaffold42086 TRF Tandem_Repeat 50012 50036 50 + . . scaffold42086 TRF Tandem_Repeat 52465 52503 51 + . . scaffold42086 TRF Tandem_Repeat 57763 58593 1270 + . . scaffold42086 TRF Tandem_Repeat 61721 61761 82 + . . scaffold42086 TRF Tandem_Repeat 66699 66795 95 + . . scaffold42086 WUBlastX DNA_Helitron 71693 72241 114 + . . scaffold42086 WUBlastX RC_Helitron 71711 72376 81 + . . scaffold42086 GLEAN promoter 72993 73992 0.990956 + . ID=CGI_10006073; scaffold42086 GLEAN mRNA 73993 80504 0.990956 + . ID=CGI_10006073; scaffold42086 TRF Tandem_Repeat 79049 79766 971 + . . scaffold42086 TRF Tandem_Repeat 82425 82477 88 + . . scaffold42086 TRF Tandem_Repeat 82804 82864 113 + . . scaffold42086 TRF Tandem_Repeat 86763 87750 1339 + . . scaffold42086 TRF Tandem_Repeat 92133 92431 211 + . . scaffold42086 TRF Tandem_Repeat 94558 94627 79 + . . scaffold42086 TRF Tandem_Repeat 94558 94627 115 + . . scaffold42086 TRF Tandem_Repeat 94566 94624 91 + . . scaffold42086 TRF Tandem_Repeat 94797 95977 1580 + . . scaffold42086 TRF Tandem_Repeat 109483 109532 57 + . . scaffold42086 TRF Tandem_Repeat 113368 115790 2433 + . . scaffold42086 TRF Tandem_Repeat 113368 115790 2171 + . . scaffold42086 TRF Tandem_Repeat 120005 120044 53 + . . scaffold42086 TRF Tandem_Repeat 120008 120044 65 + . . scaffold42086 TRF Tandem_Repeat 122536 122582 94 + . . scaffold42086 WUBlastX LINE_L1-Tx1 122590 122835 54 - . . scaffold42086 TRF Tandem_Repeat 123696 123744 62 + . . scaffold42086 TRF Tandem_Repeat 123697 123731 52 + . . scaffold42086 WUBlastX LINE_RTE-BovB 129896 130306 62 + . . scaffold42086 WUBlastX LINE_RTE-BovB 130010 130378 208 + . . scaffold42086 WUBlastX LINE_RTE-BovB 130049 130357 250 + . . scaffold42086 WUBlastX LINE_RTE-BovB 131919 132068 79 + . . scaffold42086 GLEAN mRNA 132031 141843 0.997945 - . ID=CGI_10006074; scaffold42086 GLEAN promoter 141844 142843 0.997945 - . ID=CGI_10006074; scaffold42090 WUBlastX LINE_L2 3003 3899 363 - . . scaffold42090 WUBlastX LINE_L2 3848 4546 543 - . . scaffold42090 WUBlastX LINE_L2 3851 4675 325 - . . scaffold42090 GLEAN promoter 5758 6757 0.498858 + . ID=CGI_10006103; scaffold42090 GLEAN mRNA 6758 21933 0.498858 + . ID=CGI_10006103; scaffold42090 GLEAN promoter 22528 23527 0.999607 + . ID=CGI_10006104; scaffold42090 TRF Tandem_Repeat 23444 23484 82 + . . scaffold42090 GLEAN mRNA 23528 36733 0.999607 + . ID=CGI_10006104; scaffold42090 TRF Tandem_Repeat 32539 33284 946 + . . scaffold42090 TRF Tandem_Repeat 34672 34713 68 + . . scaffold42090 TRF Tandem_Repeat 34675 34712 51 + . . scaffold42090 GLEAN mRNA 40433 47593 0.991776 - . ID=CGI_10006105; scaffold42090 GLEAN promoter 47594 48593 0.991776 - . ID=CGI_10006105; scaffold42090 GLEAN mRNA 47896 63670 0.999612 - . ID=CGI_10006106; scaffold42090 TRF Tandem_Repeat 51305 51485 198 + . . scaffold42090 GLEAN promoter 63671 64670 0.999612 - . ID=CGI_10006106; scaffold42090 TRF Tandem_Repeat 63732 64511 518 + . . scaffold42090 TRF Tandem_Repeat 64113 68449 1072 + . . scaffold42090 TRF Tandem_Repeat 64332 68542 1483 + . . scaffold42090 TRF Tandem_Repeat 64413 65548 459 + . . scaffold42090 TRF Tandem_Repeat 67692 68452 493 + . . scaffold42090 GLEAN mRNA 68604 88235 0.999674 - . ID=CGI_10006107; scaffold42090 GLEAN promoter 68636 69635 0.896128 + . ID=CGI_10006108; scaffold42090 GLEAN mRNA 69636 69851 0.896128 + . ID=CGI_10006108; scaffold42090 TRF Tandem_Repeat 79602 79638 67 + . . scaffold42090 TRF Tandem_Repeat 86462 86511 100 + . . scaffold42090 GLEAN promoter 88236 89235 0.999674 - . ID=CGI_10006107; scaffold42090 GLEAN promoter 90346 91345 0.896129 + . ID=CGI_10006109; scaffold42090 GLEAN mRNA 91346 98858 0.896129 + . ID=CGI_10006109; scaffold42090 WUBlastX LTR_Gypsy 102026 102652 121 + . . scaffold42090 GLEAN promoter 104663 105662 0.649464 + . ID=CGI_10006110; scaffold42090 GLEAN mRNA 105663 106085 0.649464 + . ID=CGI_10006110; scaffold42090 WUBlastX DNA_Harbinger 111108 111959 412 + . . scaffold42090 WUBlastX DNA_Harbinger 111108 112112 249 + . . scaffold42090 WUBlastX LINE_L1-Tx1 112680 113042 98 - . . scaffold42090 WUBlastX LINE_L1-Tx1 112815 113042 103 - . . scaffold42090 WUBlastX LINE_L1-Tx1 114606 115640 317 - . . scaffold42090 WUBlastX LINE_L1-Tx1 115642 116757 256 - . . scaffold42090 WUBlastX LINE_L1-Tx1 116235 116942 161 - . . scaffold42090 WUBlastX LINE_L1-Tx1 116553 117080 107 - . . scaffold42090 WUBlastX DNA_Crypton 139408 139614 61 - . . scaffold42090 WUBlastX DNA_Crypton 139450 139644 41 - . . scaffold42096 GLEAN promoter 5943 6942 0.999068 + . ID=CGI_10006159; scaffold42096 TRF Tandem_Repeat 6038 6097 120 + . . scaffold42096 GLEAN mRNA 6943 7767 0.999068 + . ID=CGI_10006159; scaffold42096 TRF Tandem_Repeat 15285 15456 285 + . . scaffold42096 GLEAN promoter 17014 18013 1 + . ID=CGI_10006160; scaffold42096 GLEAN mRNA 18014 18325 1 + . ID=CGI_10006160; scaffold42096 TRF Tandem_Repeat 19538 19565 56 + . . scaffold42096 GLEAN mRNA 28977 34398 0.999998 - . ID=CGI_10006161; scaffold42096 GLEAN promoter 34399 35398 0.999998 - . ID=CGI_10006161; scaffold42096 GLEAN mRNA 40400 59761 0.831831 - . ID=CGI_10006162; scaffold42096 GLEAN promoter 59762 60761 0.831831 - . ID=CGI_10006162; scaffold42096 GLEAN mRNA 60228 64870 0.231975 - . ID=CGI_10006163; scaffold42096 GLEAN promoter 64871 65870 0.231975 - . ID=CGI_10006163; scaffold42096 GLEAN promoter 65887 66886 0.987952 + . ID=CGI_10006164; scaffold42096 GLEAN mRNA 66887 96531 0.987952 + . ID=CGI_10006164; scaffold42096 TRF Tandem_Repeat 68229 69252 1514 + . . scaffold42096 TRF Tandem_Repeat 89150 89246 81 + . . scaffold42096 TRF Tandem_Repeat 89150 89309 108 + . . scaffold42096 TRF Tandem_Repeat 89150 89260 73 + . . scaffold42096 GLEAN mRNA 96755 112781 0.947295 - . ID=CGI_10006165; scaffold42096 WUBlastX LINE_RTE-X 105183 105710 112 + . . scaffold42096 WUBlastX LINE_RTE-X 105186 105578 199 + . . scaffold42096 WUBlastX LINE_RTE-X 105249 105821 37 + . . scaffold42096 GLEAN promoter 105698 106697 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX LINE_CR1 105776 105844 23 + . . scaffold42096 GLEAN mRNA 106698 118966 0.999659 + . ID=CGI_10006166; scaffold42096 WUBlastX DNA_Harbinger 106707 107078 196 + . . scaffold42096 WUBlastX DNA_Harbinger 107437 107574 24 + . . scaffold42096 WUBlastX DNA_Harbinger 107935 108855 586 - . . scaffold42096 WUBlastX LINE_L2 108923 109411 154 + . . scaffold42096 WUBlastX LINE_L2 109040 109399 308 + . . scaffold42096 WUBlastX LINE_L2 109431 109763 245 + . . scaffold42096 WUBlastX LINE_L2 109765 110340 336 + . . scaffold42096 WUBlastX LINE_L2 110328 110705 94 + . . scaffold42096 TRF Tandem_Repeat 111099 111139 73 + . . scaffold42096 GLEAN promoter 112782 113781 0.947295 - . ID=CGI_10006165; scaffold42096 TRF Tandem_Repeat 122524 122634 61 + . . scaffold42096 TRF Tandem_Repeat 122524 122635 70 + . . scaffold42096 GLEAN promoter 124559 125558 0.999821 + . ID=CGI_10006167; scaffold42096 TRF Tandem_Repeat 125318 125359 50 + . . scaffold42096 TRF Tandem_Repeat 125366 125517 155 + . . scaffold42096 TRF Tandem_Repeat 125403 125482 79 + . . scaffold42096 GLEAN mRNA 125559 130462 0.999821 + . ID=CGI_10006167; scaffold42096 GLEAN mRNA 132596 145403 0.998561 - . ID=CGI_10006168; scaffold42096 TRF Tandem_Repeat 136046 136081 63 + . . scaffold42096 GLEAN promoter 145404 146403 0.998561 - . ID=CGI_10006168; scaffold421 GLEAN promoter 1 48 0.999873 + . ID=CGI_10012146; scaffold421 GLEAN mRNA 49 14270 0.999873 + . ID=CGI_10012146; scaffold421 TRF Tandem_Repeat 16581 16670 171 + . . scaffold421 WUBlastX LTR_Gypsy 32350 32469 24 + . . scaffold421 WUBlastX LTR_Gypsy 32472 32651 74 + . . scaffold421 TRF Tandem_Repeat 40422 40471 100 + . . scaffold421 TRF Tandem_Repeat 42149 42196 96 + . . scaffold421 TRF Tandem_Repeat 44049 44088 80 + . . scaffold421 TRF Tandem_Repeat 44576 44623 96 + . . scaffold421 WUBlastX LINE_RTE-X 49550 49657 23 - . . scaffold421 WUBlastX LINE_L1 50117 50521 35 - . . scaffold421 WUBlastX LINE_L1-Tx1 50186 50611 77 - . . scaffold421 WUBlastX LINE_L1-Tx1 50186 50524 118 - . . scaffold421 WUBlastX LINE_L1 50763 51338 167 - . . scaffold421 WUBlastX LINE_L1-Tx1 50865 51728 316 - . . scaffold421 WUBlastX LINE_L1-Tx1 51735 52025 71 + . . scaffold421 WUBlastX LINE_L1 51783 52019 87 + . . scaffold421 WUBlastX LINE_L1-Tx1 52538 52690 68 - . . scaffold421 GLEAN promoter 66992 67991 0.999996 + . ID=CGI_10012147; scaffold421 GLEAN mRNA 67992 71571 0.999996 + . ID=CGI_10012147; scaffold421 TRF Tandem_Repeat 68304 68353 68 + . . scaffold421 TRF Tandem_Repeat 68399 69185 969 + . . scaffold421 TRF Tandem_Repeat 70137 70283 73 + . . scaffold421 TRF Tandem_Repeat 70199 70328 93 + . . scaffold421 TRF Tandem_Repeat 71897 71946 68 + . . scaffold421 TRF Tandem_Repeat 73553 73699 73 + . . scaffold421 TRF Tandem_Repeat 73615 73744 93 + . . scaffold421 TRF Tandem_Repeat 75405 76316 1306 + . . scaffold421 GLEAN promoter 86872 87871 1 + . ID=CGI_10012148; scaffold421 GLEAN mRNA 87872 96749 1 + . ID=CGI_10012148; scaffold421 GLEAN mRNA 95291 95467 0.618241 - . ID=CGI_10012149; scaffold421 GLEAN promoter 95468 96467 0.618241 - . ID=CGI_10012149; scaffold421 GLEAN mRNA 98330 102732 1 - . ID=CGI_10012150; scaffold421 GLEAN promoter 102733 103732 1 - . ID=CGI_10012150; scaffold421 GLEAN promoter 108930 109929 1 + . ID=CGI_10012151; scaffold421 GLEAN mRNA 109930 118068 1 + . ID=CGI_10012151; scaffold421 TRF Tandem_Repeat 110082 110134 106 + . . scaffold421 TRF Tandem_Repeat 111481 111521 82 + . . scaffold421 TRF Tandem_Repeat 117778 117825 96 + . . scaffold421 TRF Tandem_Repeat 124482 124527 92 + . . scaffold421 GLEAN promoter 125493 126492 1 + . ID=CGI_10012152; scaffold421 GLEAN mRNA 126493 127505 1 + . ID=CGI_10012152; scaffold421 GLEAN mRNA 131972 134020 0.998747 - . ID=CGI_10012153; scaffold421 GLEAN promoter 134021 135020 0.998747 - . ID=CGI_10012153; scaffold421 GLEAN promoter 145343 146342 0.443398 + . ID=CGI_10012154; scaffold421 GLEAN mRNA 146343 147389 0.443398 + . ID=CGI_10012154; scaffold421 WUBlastX DNA_TcMar-Marin 150631 151095 46 - . . scaffold421 WUBlastX DNA_TcMar-Marin 151508 151627 25 - . . scaffold421 WUBlastX LINE_RTE-BovB 151645 151749 59 + . . scaffold421 WUBlastX LINE_RTE-BovB 151645 151803 55 + . . scaffold421 WUBlastX LINE_RTE-BovB 151806 152000 57 + . . scaffold421 TRF Tandem_Repeat 157991 158016 52 + . . scaffold421 TRF Tandem_Repeat 158074 158099 52 + . . scaffold421 TRF Tandem_Repeat 158699 159050 118 + . . scaffold421 TRF Tandem_Repeat 158795 159108 290 + . . scaffold421 TRF Tandem_Repeat 159790 159830 82 + . . scaffold421 TRF Tandem_Repeat 159830 159877 96 + . . scaffold421 GLEAN promoter 169277 170276 0.999676 + . ID=CGI_10012155; scaffold421 GLEAN mRNA 170277 178992 0.999676 + . ID=CGI_10012155; scaffold421 WUBlastX LINE_L1-Tx1 174992 175471 28 - . . scaffold421 WUBlastX LINE_L1-Tx1 175070 175471 126 - . . scaffold421 WUBlastX LINE_L1-Tx1 175220 175516 61 - . . scaffold421 GLEAN promoter 181657 182656 1 + . ID=CGI_10012156; scaffold421 GLEAN mRNA 182657 200231 1 + . ID=CGI_10012156; scaffold421 WUBlastX LINE_RTE-X 187283 187615 20 + . . scaffold421 WUBlastX LINE_RTE-X 187304 187516 61 + . . scaffold421 WUBlastX LINE_RTE-X 187358 187555 31 + . . scaffold421 GLEAN promoter 199987 200986 0.153338 + . ID=CGI_10012157; scaffold421 GLEAN mRNA 200987 225513 0.153338 + . ID=CGI_10012157; scaffold421 TRF Tandem_Repeat 202382 202424 86 + . . scaffold421 TRF Tandem_Repeat 203537 203585 62 + . . scaffold421 TRF Tandem_Repeat 204608 204652 72 + . . scaffold421 TRF Tandem_Repeat 209135 209212 140 + . . scaffold421 TRF Tandem_Repeat 231389 231418 60 + . . scaffold421 GLEAN mRNA 232502 254015 0.999281 - . ID=CGI_10012158; scaffold421 WUBlastX LINE_RTE-X 247281 247571 48 - . . scaffold421 WUBlastX LINE_RTE-X 247350 247667 52 - . . scaffold421 WUBlastX LINE_RTE-X 247404 247622 64 - . . scaffold421 WUBlastX LINE_RTE-X 247413 247571 81 - . . scaffold421 GLEAN promoter 254016 255015 0.999281 - . ID=CGI_10012158; scaffold421 TRF Tandem_Repeat 257731 257770 62 + . . scaffold421 GLEAN promoter 263990 264989 0.887893 + . ID=CGI_10012159; scaffold421 TRF Tandem_Repeat 264910 264970 115 + . . scaffold421 GLEAN mRNA 264990 271518 0.887893 + . ID=CGI_10012159; scaffold421 TRF Tandem_Repeat 267422 267471 73 + . . scaffold421 TRF Tandem_Repeat 267831 267878 96 + . . scaffold421 TRF Tandem_Repeat 280166 280317 144 + . . scaffold421 WUBlastX LTR_Gypsy-Cigr 307292 307387 51 - . . scaffold421 WUBlastX LTR_Gypsy-Cigr 307316 307414 51 - . . scaffold421 WUBlastX LTR_Gypsy 307334 310741 2498 - . . scaffold421 WUBlastX LTR_Gypsy-Cigr 310550 310783 48 - . . scaffold42112 GLEAN mRNA 453 6771 0.631323 - . ID=CGI_10006111; scaffold42112 GLEAN promoter 6772 7771 0.631323 - . ID=CGI_10006111; scaffold42112 GLEAN promoter 9077 10076 0.997171 + . ID=CGI_10006112; scaffold42112 GLEAN mRNA 10077 12379 0.997171 + . ID=CGI_10006112; scaffold42112 GLEAN mRNA 10738 21944 0.981521 - . ID=CGI_10006113; scaffold42112 GLEAN promoter 21945 22944 0.981521 - . ID=CGI_10006113; scaffold42112 GLEAN mRNA 26377 30556 0.999823 - . ID=CGI_10006114; scaffold42112 TRF Tandem_Repeat 28154 28940 925 + . . scaffold42112 GLEAN promoter 30557 31556 0.999823 - . ID=CGI_10006114; scaffold42112 GLEAN promoter 32005 33004 0.739572 + . ID=CGI_10006115; scaffold42112 GLEAN mRNA 33005 40488 0.739572 + . ID=CGI_10006115; scaffold42112 TRF Tandem_Repeat 47624 48361 719 + . . scaffold42112 GLEAN mRNA 50368 56260 0.999673 - . ID=CGI_10006116; scaffold42112 WUBlastX DNA_hAT-hATw 51304 51669 21 - . . scaffold42112 GLEAN promoter 56261 57260 0.999673 - . ID=CGI_10006116; scaffold42112 GLEAN mRNA 57464 57817 1 - . ID=CGI_10006117; scaffold42112 GLEAN promoter 57818 58817 1 - . ID=CGI_10006117; scaffold42112 TRF Tandem_Repeat 60186 60235 100 + . . scaffold42112 WUBlastX LTR_Copia 63681 63764 20 - . . scaffold42112 WUBlastX LTR_Gypsy 64101 64493 93 - . . scaffold42112 WUBlastX LTR_Gypsy 64218 64490 114 - . . scaffold42112 WUBlastX LTR_Gypsy 64358 65158 195 - . . scaffold42112 WUBlastX LTR_Gypsy 64490 67600 2500 - . . scaffold42112 WUBlastX LTR_Gypsy 67600 67713 69 - . . scaffold42112 WUBlastX LTR_Gypsy 67647 67955 106 - . . scaffold42112 WUBlastX LTR_Gypsy 67707 68018 77 - . . scaffold42112 WUBlastX LTR_Gypsy 67725 67949 156 - . . scaffold42112 GLEAN mRNA 69169 69513 0.999933 - . ID=CGI_10006118; scaffold42112 GLEAN promoter 69514 70513 0.999933 - . ID=CGI_10006118; scaffold42112 TRF Tandem_Repeat 73263 73303 82 + . . scaffold42112 GLEAN mRNA 73547 74984 0.999998 - . ID=CGI_10006119; scaffold42112 GLEAN promoter 74985 75984 0.999998 - . ID=CGI_10006119; scaffold42112 GLEAN promoter 77445 78444 0.819024 + . ID=CGI_10006120; scaffold42112 GLEAN mRNA 78445 103825 0.819024 + . ID=CGI_10006120; scaffold42112 TRF Tandem_Repeat 81346 81376 53 + . . scaffold42112 TRF Tandem_Repeat 81581 82672 1657 + . . scaffold42112 GLEAN mRNA 102414 107190 0.997066 - . ID=CGI_10006121; scaffold42112 GLEAN promoter 106592 107591 0.999949 + . ID=CGI_10006122; scaffold42112 GLEAN promoter 107191 108190 0.997066 - . ID=CGI_10006121; scaffold42112 GLEAN mRNA 107592 111904 0.999949 + . ID=CGI_10006122; scaffold42112 GLEAN mRNA 113620 131751 0.999598 - . ID=CGI_10006123; scaffold42112 TRF Tandem_Repeat 116470 116594 101 + . . scaffold42112 TRF Tandem_Repeat 117613 118482 1243 + . . scaffold42112 GLEAN promoter 124650 125649 0.999878 + . ID=CGI_10006124; scaffold42112 GLEAN mRNA 125650 129767 0.999878 + . ID=CGI_10006124; scaffold42112 GLEAN promoter 131752 132751 0.999598 - . ID=CGI_10006123; scaffold42112 TRF Tandem_Repeat 132648 132683 72 + . . scaffold42112 GLEAN mRNA 134192 141157 1 - . ID=CGI_10006125; scaffold42112 TRF Tandem_Repeat 135602 135666 130 + . . scaffold42112 GLEAN promoter 141158 142157 1 - . ID=CGI_10006125; scaffold42112 TRF Tandem_Repeat 144157 144449 349 + . . scaffold42124 WUBlastX LINE_L1 3510 3716 35 - . . scaffold42124 WUBlastX LINE_L1-Tx1 3546 3758 52 - . . scaffold42124 TRF Tandem_Repeat 4740 4795 105 + . . scaffold42124 TRF Tandem_Repeat 6142 6195 108 + . . scaffold42124 TRF Tandem_Repeat 17040 17090 102 + . . scaffold42124 TRF Tandem_Repeat 21009 21082 62 + . . scaffold42124 WUBlastX LTR_Ngaro 22664 23500 348 - . . scaffold42124 GLEAN promoter 32717 33716 0.69411 + . ID=CGI_10006230; scaffold42124 GLEAN mRNA 33717 47543 0.69411 + . ID=CGI_10006230; scaffold42124 TRF Tandem_Repeat 34144 34194 50 + . . scaffold42124 TRF Tandem_Repeat 34286 34419 72 + . . scaffold42124 TRF Tandem_Repeat 38482 38537 112 + . . scaffold42124 WUBlastX DNA_MuDR 42702 42965 48 - . . scaffold42124 WUBlastX DNA_MuDR 42762 42965 74 - . . scaffold42124 GLEAN mRNA 49349 52139 1 - . ID=CGI_10006231; scaffold42124 GLEAN promoter 52140 53139 1 - . ID=CGI_10006231; scaffold42124 TRF Tandem_Repeat 54172 54221 100 + . . scaffold42124 TRF Tandem_Repeat 59299 59340 75 + . . scaffold42124 GLEAN promoter 62234 63233 0.99926 + . ID=CGI_10006232; scaffold42124 GLEAN mRNA 63234 66153 0.99926 + . ID=CGI_10006232; scaffold42124 WUBlastX LTR_Gypsy 65190 65876 61 + . . scaffold42124 GLEAN promoter 67217 68216 0.734029 + . ID=CGI_10006234; scaffold42124 GLEAN mRNA 67423 67854 0.618186 - . ID=CGI_10006233; scaffold42124 GLEAN promoter 67855 68854 0.618186 - . ID=CGI_10006233; scaffold42124 GLEAN mRNA 68217 68573 0.734029 + . ID=CGI_10006234; scaffold42124 WUBlastX LINE_L1-Tx1 74474 74626 26 - . . scaffold42124 GLEAN mRNA 77679 78377 0.998819 - . ID=CGI_10006235; scaffold42124 GLEAN promoter 78378 79377 0.998819 - . ID=CGI_10006235; scaffold42124 GLEAN mRNA 83163 85242 1 - . ID=CGI_10006236; scaffold42124 GLEAN promoter 85243 86242 1 - . ID=CGI_10006236; scaffold42124 GLEAN mRNA 85679 91702 0.993907 - . ID=CGI_10006237; scaffold42124 GLEAN promoter 91703 92702 0.993907 - . ID=CGI_10006237; scaffold42124 GLEAN mRNA 97266 113637 0.998311 - . ID=CGI_10006238; scaffold42124 TRF Tandem_Repeat 110278 110318 82 + . . scaffold42124 TRF Tandem_Repeat 111544 111568 50 + . . scaffold42124 GLEAN promoter 113638 114637 0.998311 - . ID=CGI_10006238; scaffold42124 GLEAN mRNA 117255 118579 1 - . ID=CGI_10006239; scaffold42124 GLEAN promoter 118580 119579 1 - . ID=CGI_10006239; scaffold42124 TRF Tandem_Repeat 133241 133277 74 + . . scaffold42124 GLEAN promoter 138555 139554 1 + . ID=CGI_10006240; scaffold42124 GLEAN mRNA 139555 143306 1 + . ID=CGI_10006240; scaffold42124 TRF Tandem_Repeat 139768 139834 134 + . . scaffold42128 GLEAN promoter 970 1969 0.99078 + . ID=CGI_10006194; scaffold42128 GLEAN mRNA 1970 15266 0.99078 + . ID=CGI_10006194; scaffold42128 WUBlastX DNA_TcMar-Tc1 11706 12173 123 + . . scaffold42128 WUBlastX DNA_TcMar-Tc1 12002 12727 193 + . . scaffold42128 WUBlastX DNA_TcMar-Tc1 12170 12727 278 + . . scaffold42128 WUBlastX DNA_TcMar-Tc1 12784 12948 53 + . . scaffold42128 WUBlastX DNA_TcMar-Tc1 12811 12948 78 + . . scaffold42128 GLEAN promoter 25116 26115 0.774949 + . ID=CGI_10006195; scaffold42128 GLEAN mRNA 26116 26427 0.774949 + . ID=CGI_10006195; scaffold42128 TRF Tandem_Repeat 31413 31630 337 + . . scaffold42128 TRF Tandem_Repeat 33251 33751 834 + . . scaffold42128 TRF Tandem_Repeat 33251 33751 889 + . . scaffold42128 TRF Tandem_Repeat 37514 37618 156 + . . scaffold42128 GLEAN promoter 40253 41252 0.838265 + . ID=CGI_10006196; scaffold42128 GLEAN mRNA 41253 58159 0.838265 + . ID=CGI_10006196; scaffold42128 TRF Tandem_Repeat 53564 54388 1154 + . . scaffold42128 WUBlastX LINE_Penelope 73561 73800 41 + . . scaffold42128 GLEAN mRNA 75404 100829 0.998266 - . ID=CGI_10006197; scaffold42128 GLEAN promoter 94538 95537 0.99733 + . ID=CGI_10006198; scaffold42128 GLEAN mRNA 95538 100824 0.99733 + . ID=CGI_10006198; scaffold42128 GLEAN promoter 100830 101829 0.998266 - . ID=CGI_10006197; scaffold42128 GLEAN mRNA 104720 121214 0.954298 - . ID=CGI_10006199; scaffold42128 WUBlastX LINE_L2 114954 115412 133 - . . scaffold42128 TRF Tandem_Repeat 116568 116616 98 + . . scaffold42128 GLEAN promoter 121215 122214 0.954298 - . ID=CGI_10006199; scaffold42128 TRF Tandem_Repeat 122279 122347 138 + . . scaffold42128 GLEAN promoter 127202 128201 0.989551 + . ID=CGI_10006200; scaffold42128 TRF Tandem_Repeat 128071 128103 66 + . . scaffold42128 GLEAN mRNA 128202 130802 0.989551 + . ID=CGI_10006200; scaffold42128 GLEAN mRNA 133578 138420 0.702204 - . ID=CGI_10006201; scaffold42128 WUBlastX LINE_CR1 136918 137238 62 - . . scaffold42128 GLEAN promoter 137544 138543 0.593383 + . ID=CGI_10006202; scaffold42128 TRF Tandem_Repeat 137897 137935 55 + . . scaffold42128 GLEAN promoter 138421 139420 0.702204 - . ID=CGI_10006201; scaffold42128 GLEAN mRNA 138544 141871 0.593383 + . ID=CGI_10006202; scaffold42128 GLEAN mRNA 143636 146357 1 - . ID=CGI_10006203; scaffold42128 GLEAN promoter 146358 147246 1 - . ID=CGI_10006203; scaffold42128 TRF Tandem_Repeat 146887 146944 91 + . . scaffold42128 TRF Tandem_Repeat 146888 146941 56 + . . scaffold42130 GLEAN promoter 1 827 1 + . ID=CGI_10006204; scaffold42130 GLEAN mRNA 828 4181 1 + . ID=CGI_10006204; scaffold42130 GLEAN mRNA 7501 10168 1 - . ID=CGI_10006205; scaffold42130 GLEAN promoter 10169 11168 1 - . ID=CGI_10006205; scaffold42130 GLEAN mRNA 11631 13654 1 - . ID=CGI_10006206; scaffold42130 GLEAN promoter 13655 14654 1 - . ID=CGI_10006206; scaffold42130 GLEAN mRNA 23866 24147 0.923385 - . ID=CGI_10006207; scaffold42130 GLEAN promoter 24148 25147 0.923385 - . ID=CGI_10006207; scaffold42130 GLEAN promoter 31114 32113 0.982404 + . ID=CGI_10006208; scaffold42130 GLEAN mRNA 32114 41286 0.982404 + . ID=CGI_10006208; scaffold42130 GLEAN promoter 44607 45606 0.999799 + . ID=CGI_10006209; scaffold42130 GLEAN mRNA 45607 57593 0.999799 + . ID=CGI_10006209; scaffold42130 GLEAN mRNA 67062 76567 0.993305 - . ID=CGI_10006210; scaffold42130 GLEAN promoter 76107 77106 0.974872 + . ID=CGI_10006211; scaffold42130 GLEAN promoter 76568 77567 0.993305 - . ID=CGI_10006210; scaffold42130 GLEAN mRNA 77107 86259 0.974872 + . ID=CGI_10006211; scaffold42130 GLEAN promoter 87797 88796 1 + . ID=CGI_10006212; scaffold42130 GLEAN mRNA 88797 91135 1 + . ID=CGI_10006212; scaffold42130 GLEAN mRNA 93660 104262 0.999624 - . ID=CGI_10006213; scaffold42130 GLEAN promoter 104263 105262 0.999624 - . ID=CGI_10006213; scaffold42130 GLEAN promoter 104712 105711 0.998784 + . ID=CGI_10006214; scaffold42130 GLEAN mRNA 105712 109267 0.998784 + . ID=CGI_10006214; scaffold42130 GLEAN mRNA 109808 118532 0.934141 - . ID=CGI_10006215; scaffold42130 GLEAN promoter 117700 118699 1 + . ID=CGI_10006216; scaffold42130 GLEAN promoter 118533 119532 0.934141 - . ID=CGI_10006215; scaffold42130 GLEAN mRNA 118700 122461 1 + . ID=CGI_10006216; scaffold42130 GLEAN promoter 123599 124598 0.576928 + . ID=CGI_10006217; scaffold42130 GLEAN mRNA 124599 135553 0.576928 + . ID=CGI_10006217; scaffold42144 TRF Tandem_Repeat 642 821 297 + . . scaffold42144 TRF Tandem_Repeat 1384 1430 94 + . . scaffold42144 GLEAN promoter 8140 9139 0.946894 + . ID=CGI_10006246; scaffold42144 GLEAN mRNA 9094 23209 0.863216 - . ID=CGI_10006245; scaffold42144 GLEAN mRNA 9140 67657 0.946894 + . ID=CGI_10006246; scaffold42144 GLEAN promoter 23210 24209 0.863216 - . ID=CGI_10006245; scaffold42144 TRF Tandem_Repeat 30057 30095 78 + . . scaffold42144 TRF Tandem_Repeat 40479 40518 80 + . . scaffold42144 TRF Tandem_Repeat 50486 50525 80 + . . scaffold42144 GLEAN mRNA 69475 79074 0.999343 - . ID=CGI_10006247; scaffold42144 TRF Tandem_Repeat 71034 71135 89 + . . scaffold42144 TRF Tandem_Repeat 75187 75238 97 + . . scaffold42144 GLEAN promoter 79075 80074 0.999343 - . ID=CGI_10006247; scaffold42144 TRF Tandem_Repeat 80372 80617 420 + . . scaffold42144 TRF Tandem_Repeat 82019 82058 80 + . . scaffold42144 TRF Tandem_Repeat 84567 84603 74 + . . scaffold42144 TRF Tandem_Repeat 87718 87766 98 + . . scaffold42144 TRF Tandem_Repeat 89574 89616 86 + . . scaffold42144 TRF Tandem_Repeat 94485 94539 110 + . . scaffold42144 TRF Tandem_Repeat 96141 96175 70 + . . scaffold42144 TRF Tandem_Repeat 98160 98810 602 + . . scaffold42144 TRF Tandem_Repeat 98195 98810 371 + . . scaffold42144 TRF Tandem_Repeat 98712 98819 118 + . . scaffold42144 TRF Tandem_Repeat 98714 98809 55 + . . scaffold42144 TRF Tandem_Repeat 98731 98809 86 + . . scaffold42144 GLEAN mRNA 104437 125325 0.993907 - . ID=CGI_10006248; scaffold42144 WUBlastX DNA_TcMar-Marin 108183 108281 20 + . . scaffold42144 WUBlastX DNA_TcMar-Tc1 108436 109431 244 + . . scaffold42144 TRF Tandem_Repeat 116427 116602 352 + . . scaffold42144 TRF Tandem_Repeat 122450 122485 63 + . . scaffold42144 TRF Tandem_Repeat 122694 122838 112 + . . scaffold42144 WUBlastX LINE_RTE-X 124336 124779 118 + . . scaffold42144 WUBlastX LINE_RTE-X 124408 124779 156 + . . scaffold42144 GLEAN promoter 125326 126325 0.993907 - . ID=CGI_10006248; scaffold42144 GLEAN promoter 125947 126946 0.937847 + . ID=CGI_10006249; scaffold42144 GLEAN mRNA 126947 143095 0.937847 + . ID=CGI_10006249; scaffold42144 WUBlastX LTR_Gypsy 128028 128801 131 - . . scaffold42144 TRF Tandem_Repeat 135811 135879 138 + . . scaffold42144 TRF Tandem_Repeat 140529 140585 114 + . . scaffold42144 TRF Tandem_Repeat 144806 144946 237 + . . scaffold42144 TRF Tandem_Repeat 147651 148363 1005 + . . scaffold42158 TRF Tandem_Repeat 3773 3835 119 + . . scaffold42158 GLEAN mRNA 8163 15429 1 - . ID=CGI_10006299; scaffold42158 TRF Tandem_Repeat 15037 15064 56 + . . scaffold42158 GLEAN promoter 15430 16429 1 - . ID=CGI_10006299; scaffold42158 WUBlastX LINE_RTE-BovB 16785 17045 120 - . . scaffold42158 WUBlastX LINE_RTE-BovB 16848 17045 123 - . . scaffold42158 WUBlastX LINE_RTE-BovB 16860 17081 68 - . . scaffold42158 WUBlastX LINE_RTE-BovB 17083 17190 22 - . . scaffold42158 WUBlastX LINE_RTE-BovB 17144 18556 114 - . . scaffold42158 WUBlastX LINE_RTE-BovB 17222 17809 526 - . . scaffold42158 WUBlastX LINE_RTE-BovB 17222 18136 441 - . . scaffold42158 WUBlastX LINE_RTE-BovB 18483 18791 199 - . . scaffold42158 WUBlastX LINE_RTE-BovB 18483 18848 119 - . . scaffold42158 WUBlastX LINE_RTE-BovB 18826 18999 78 - . . scaffold42158 WUBlastX LINE_RTE-BovB 18856 19038 27 - . . scaffold42158 TRF Tandem_Repeat 24669 25514 1115 + . . scaffold42158 TRF Tandem_Repeat 27730 28198 866 + . . scaffold42158 TRF Tandem_Repeat 30139 30184 92 + . . scaffold42158 GLEAN promoter 32625 33624 0.98357 + . ID=CGI_10006300; scaffold42158 GLEAN mRNA 33625 47387 0.98357 + . ID=CGI_10006300; scaffold42158 TRF Tandem_Repeat 41587 41953 671 + . . scaffold42158 GLEAN mRNA 50861 64798 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 52245 52439 273 + . . scaffold42158 TRF Tandem_Repeat 53144 53183 80 + . . scaffold42158 TRF Tandem_Repeat 55439 56124 1146 + . . scaffold42158 TRF Tandem_Repeat 55439 56124 1200 + . . scaffold42158 TRF Tandem_Repeat 57746 58119 396 + . . scaffold42158 TRF Tandem_Repeat 60043 61587 2586 + . . scaffold42158 TRF Tandem_Repeat 60399 60669 72 + . . scaffold42158 TRF Tandem_Repeat 61584 61756 292 + . . scaffold42158 GLEAN promoter 64799 65798 0.99967 - . ID=CGI_10006301; scaffold42158 TRF Tandem_Repeat 66534 66625 112 + . . scaffold42158 TRF Tandem_Repeat 66691 66864 179 + . . scaffold42158 TRF Tandem_Repeat 66901 67003 71 + . . scaffold42158 TRF Tandem_Repeat 67082 67175 93 + . . scaffold42158 GLEAN promoter 67230 68229 0.660047 + . ID=CGI_10006302; scaffold42158 GLEAN mRNA 68230 68958 0.660047 + . ID=CGI_10006302; scaffold42158 TRF Tandem_Repeat 73637 73740 199 + . . scaffold42158 GLEAN mRNA 73735 75247 1 - . ID=CGI_10006303; scaffold42158 GLEAN promoter 75248 76247 1 - . ID=CGI_10006303; scaffold42158 GLEAN promoter 76384 77383 0.999676 + . ID=CGI_10006304; scaffold42158 GLEAN mRNA 77384 82377 0.999676 + . ID=CGI_10006304; scaffold42158 WUBlastX LINE_RTE-X 83261 83524 20 + . . scaffold42158 WUBlastX LINE_RTE-X 83691 83828 64 + . . scaffold42158 TRF Tandem_Repeat 84305 84362 116 + . . scaffold42158 GLEAN promoter 86433 87432 0.312053 + . ID=CGI_10006305; scaffold42158 GLEAN mRNA 87433 103342 0.312053 + . ID=CGI_10006305; scaffold42158 TRF Tandem_Repeat 87505 87577 146 + . . scaffold42158 TRF Tandem_Repeat 107097 107252 296 + . . scaffold42158 TRF Tandem_Repeat 107637 107681 90 + . . scaffold42158 TRF Tandem_Repeat 109622 109691 140 + . . scaffold42158 TRF Tandem_Repeat 116965 116993 58 + . . scaffold42158 TRF Tandem_Repeat 124941 125012 112 + . . scaffold42158 GLEAN mRNA 125301 129096 0.975483 - . ID=CGI_10006306; scaffold42158 GLEAN promoter 129097 130096 0.975483 - . ID=CGI_10006306; scaffold42158 WUBlastX DNA_En-Spm 130100 130888 30 + . . scaffold42158 WUBlastX DNA_En-Spm 130256 130891 85 + . . scaffold42158 WUBlastX DNA_En-Spm 130409 130891 104 + . . scaffold42158 WUBlastX DNA_En-Spm 130818 131969 175 + . . scaffold42158 WUBlastX DNA_En-Spm 130827 132251 117 + . . scaffold42158 WUBlastX DNA_En-Spm 131010 131903 265 + . . scaffold42158 TRF Tandem_Repeat 142040 142206 226 + . . scaffold42158 TRF Tandem_Repeat 145360 145574 241 + . . scaffold42158 TRF Tandem_Repeat 146656 146872 195 + . . scaffold42164 GLEAN mRNA 395 1429 1 - . ID=CGI_10006311; scaffold42164 GLEAN promoter 1430 2429 1 - . ID=CGI_10006311; scaffold42164 TRF Tandem_Repeat 1671 1695 50 + . . scaffold42164 TRF Tandem_Repeat 3501 3654 256 + . . scaffold42164 GLEAN promoter 4802 5801 1 + . ID=CGI_10006312; scaffold42164 TRF Tandem_Repeat 5071 5095 50 + . . scaffold42164 GLEAN mRNA 5802 12024 1 + . ID=CGI_10006312; scaffold42164 GLEAN mRNA 13962 16584 0.999771 - . ID=CGI_10006313; scaffold42164 GLEAN promoter 16585 17584 0.999771 - . ID=CGI_10006313; scaffold42164 GLEAN promoter 22516 23515 0.490339 + . ID=CGI_10006314; scaffold42164 GLEAN mRNA 23516 26955 0.490339 + . ID=CGI_10006314; scaffold42164 TRF Tandem_Repeat 28089 28123 52 + . . scaffold42164 GLEAN promoter 32591 33590 1 + . ID=CGI_10006315; scaffold42164 GLEAN mRNA 33591 35849 1 + . ID=CGI_10006315; scaffold42164 TRF Tandem_Repeat 33979 34018 80 + . . scaffold42164 GLEAN mRNA 38049 40151 1 - . ID=CGI_10006316; scaffold42164 GLEAN promoter 40152 41151 1 - . ID=CGI_10006316; scaffold42164 GLEAN promoter 44960 45959 0.651135 + . ID=CGI_10006317; scaffold42164 GLEAN mRNA 45960 54649 0.651135 + . ID=CGI_10006317; scaffold42164 GLEAN mRNA 46971 48483 1 - . ID=CGI_10006318; scaffold42164 GLEAN promoter 48484 49483 1 - . ID=CGI_10006318; scaffold42164 GLEAN mRNA 60766 62849 0.999555 - . ID=CGI_10006319; scaffold42164 GLEAN promoter 62850 63849 0.999555 - . ID=CGI_10006319; scaffold42164 TRF Tandem_Repeat 65578 65609 64 + . . scaffold42164 TRF Tandem_Repeat 66612 66665 101 + . . scaffold42164 GLEAN mRNA 67320 70170 0.99996 - . ID=CGI_10006320; scaffold42164 GLEAN promoter 70171 71170 0.99996 - . ID=CGI_10006320; scaffold42164 GLEAN promoter 88959 89958 0.999572 + . ID=CGI_10006321; scaffold42164 GLEAN mRNA 89959 98423 0.999572 + . ID=CGI_10006321; scaffold42164 GLEAN mRNA 101554 128998 0.999899 - . ID=CGI_10006322; scaffold42164 TRF Tandem_Repeat 122254 122297 88 + . . scaffold42164 TRF Tandem_Repeat 123380 123432 97 + . . scaffold42164 GLEAN promoter 128999 129998 0.999899 - . ID=CGI_10006322; scaffold42164 GLEAN mRNA 130605 139137 0.544669 - . ID=CGI_10006323; scaffold42164 GLEAN promoter 139138 140137 0.544669 - . ID=CGI_10006323; scaffold42164 GLEAN mRNA 143019 143255 1 - . ID=CGI_10006324; scaffold42164 GLEAN promoter 143256 144255 1 - . ID=CGI_10006324; scaffold42164 GLEAN mRNA 143386 144470 0.937895 - . ID=CGI_10006325; scaffold42164 GLEAN promoter 144471 145470 0.937895 - . ID=CGI_10006325; scaffold42164 TRF Tandem_Repeat 144548 144601 72 + . . scaffold42164 WUBlastX LINE_L1-Tx1 146556 147584 415 - . . scaffold42164 WUBlastX LINE_L1 146997 147722 203 - . . scaffold42166 WUBlastX LINE_RTE-X 3719 4111 212 + . . scaffold42166 WUBlastX LINE_RTE-X 4094 5119 335 + . . scaffold42166 WUBlastX LINE_RTE-X 8710 9231 66 - . . scaffold42166 WUBlastX LINE_RTE-X 9026 10051 302 - . . scaffold42166 WUBlastX LINE_RTE-X 9218 10078 347 - . . scaffold42166 WUBlastX LINE_RTE-X 10050 10523 168 - . . scaffold42166 WUBlastX LINE_RTE-X 10068 10433 223 - . . scaffold42166 WUBlastX LINE_R1 10125 10616 40 - . . scaffold42166 WUBlastX LINE_I 10573 10650 27 - . . scaffold42166 WUBlastX LINE_L2 11292 11348 22 - . . scaffold42166 TRF Tandem_Repeat 20225 20269 65 + . . scaffold42166 TRF Tandem_Repeat 30699 30734 72 + . . scaffold42166 TRF Tandem_Repeat 44398 44585 145 + . . scaffold42166 TRF Tandem_Repeat 44527 44614 72 + . . scaffold42166 TRF Tandem_Repeat 46520 46616 72 + . . scaffold42166 TRF Tandem_Repeat 46525 46839 193 + . . scaffold42166 TRF Tandem_Repeat 46781 46868 72 + . . scaffold42166 WUBlastX LINE_RTE-X 58537 58695 69 + . . scaffold42166 WUBlastX LINE_RTE-X 58546 58782 48 + . . scaffold42166 TRF Tandem_Repeat 58972 59000 58 + . . scaffold42166 TRF Tandem_Repeat 63100 63148 98 + . . scaffold42166 TRF Tandem_Repeat 70650 70703 62 + . . scaffold42166 WUBlastX LINE_RTE-X 70897 73230 1445 + . . scaffold42166 WUBlastX LINE_RTE-X 72688 73353 103 + . . scaffold42166 GLEAN promoter 77649 78648 1 + . ID=CGI_10006279; scaffold42166 GLEAN mRNA 78649 83239 1 + . ID=CGI_10006279; scaffold42166 TRF Tandem_Repeat 85400 85535 177 + . . scaffold42166 GLEAN mRNA 86693 114138 0.62602 - . ID=CGI_10006280; scaffold42166 GLEAN promoter 93280 94279 0.99428 + . ID=CGI_10006281; scaffold42166 GLEAN mRNA 94280 95645 0.99428 + . ID=CGI_10006281; scaffold42166 TRF Tandem_Repeat 111362 111412 102 + . . scaffold42166 GLEAN promoter 113462 114461 1 + . ID=CGI_10006282; scaffold42166 GLEAN promoter 114139 115138 0.62602 - . ID=CGI_10006280; scaffold42166 GLEAN mRNA 114462 116368 1 + . ID=CGI_10006282; scaffold42166 GLEAN promoter 115986 116985 0.999676 + . ID=CGI_10006283; scaffold42166 GLEAN mRNA 116986 124163 0.999676 + . ID=CGI_10006283; scaffold42166 TRF Tandem_Repeat 127474 127525 104 + . . scaffold42172 TRF Tandem_Repeat 1209 1259 102 + . . scaffold42172 TRF Tandem_Repeat 1260 1296 74 + . . scaffold42172 TRF Tandem_Repeat 9380 9562 219 + . . scaffold42172 WUBlastX LINE_RTE-BovB 11507 12889 1308 - . . scaffold42172 TRF Tandem_Repeat 17069 17098 51 + . . scaffold42172 WUBlastX LINE_RTE-X 17736 18107 59 + . . scaffold42172 TRF Tandem_Repeat 18479 18525 67 + . . scaffold42172 TRF Tandem_Repeat 37998 38193 205 + . . scaffold42172 WUBlastX LTR_Ngaro 38565 38774 56 - . . scaffold42172 TRF Tandem_Repeat 46094 46152 66 + . . scaffold42172 GLEAN mRNA 50763 53602 0.989219 - . ID=CGI_10006332; scaffold42172 GLEAN promoter 53603 54602 0.989219 - . ID=CGI_10006332; scaffold42172 WUBlastX LINE_L1-Tx1 58008 58181 45 - . . scaffold42172 GLEAN mRNA 64223 65302 0.999572 - . ID=CGI_10006333; scaffold42172 GLEAN promoter 65303 66302 0.999572 - . ID=CGI_10006333; scaffold42172 TRF Tandem_Repeat 68362 68403 84 + . . scaffold42172 TRF Tandem_Repeat 73380 73414 70 + . . scaffold42172 WUBlastX LINE_R2-Hero 73481 73792 210 - . . scaffold42172 WUBlastX LINE_R2 73493 73852 87 - . . scaffold42172 WUBlastX LINE_R2-Hero 73748 73924 67 - . . scaffold42172 TRF Tandem_Repeat 76483 76814 260 + . . scaffold42172 TRF Tandem_Repeat 77365 77963 675 + . . scaffold42172 TRF Tandem_Repeat 77375 77956 641 + . . scaffold42172 TRF Tandem_Repeat 81056 81096 82 + . . scaffold42172 TRF Tandem_Repeat 81745 81778 52 + . . scaffold42172 GLEAN mRNA 95629 131460 0.98803 - . ID=CGI_10006334; scaffold42172 TRF Tandem_Repeat 130372 130447 152 + . . scaffold42172 GLEAN promoter 131461 132460 0.98803 - . ID=CGI_10006334; scaffold42172 TRF Tandem_Repeat 137337 137571 299 + . . scaffold42172 WUBlastX LINE_RTE-X 144985 145824 281 - . . scaffold42172 WUBlastX LINE_RTE-X 145812 147227 605 + . . scaffold42172 WUBlastX LINE_RTE-X 147356 148459 671 - . . scaffold42172 WUBlastX LINE_CR1 147782 148606 204 - . . scaffold42172 WUBlastX LINE_L2 148094 148759 71 - . . scaffold42184 TRF Tandem_Repeat 12 54 86 + . . scaffold42184 GLEAN mRNA 2244 28800 0.90117 - . ID=CGI_10006326; scaffold42184 TRF Tandem_Repeat 5461 5511 66 + . . scaffold42184 TRF Tandem_Repeat 5468 5510 50 + . . scaffold42184 TRF Tandem_Repeat 12935 12980 57 + . . scaffold42184 TRF Tandem_Repeat 12936 12977 50 + . . scaffold42184 TRF Tandem_Repeat 14201 15452 1728 + . . scaffold42184 TRF Tandem_Repeat 21938 22142 392 + . . scaffold42184 GLEAN promoter 27689 28688 0.549691 + . ID=CGI_10006327; scaffold42184 GLEAN mRNA 28689 39135 0.549691 + . ID=CGI_10006327; scaffold42184 GLEAN promoter 28801 29800 0.90117 - . ID=CGI_10006326; scaffold42184 TRF Tandem_Repeat 32017 32205 162 + . . scaffold42184 TRF Tandem_Repeat 32060 32217 226 + . . scaffold42184 TRF Tandem_Repeat 32899 33051 234 + . . scaffold42184 TRF Tandem_Repeat 35163 35526 469 + . . scaffold42184 TRF Tandem_Repeat 36491 36958 343 + . . scaffold42184 GLEAN mRNA 38914 50720 0.998779 - . ID=CGI_10006328; scaffold42184 TRF Tandem_Repeat 43622 43993 564 + . . scaffold42184 TRF Tandem_Repeat 43622 43993 568 + . . scaffold42184 TRF Tandem_Repeat 43920 44179 245 + . . scaffold42184 GLEAN promoter 50721 51720 0.998779 - . ID=CGI_10006328; scaffold42184 TRF Tandem_Repeat 53151 53290 120 + . . scaffold42184 TRF Tandem_Repeat 53670 53717 96 + . . scaffold42184 TRF Tandem_Repeat 59233 59349 88 + . . scaffold42184 TRF Tandem_Repeat 60769 60826 116 + . . scaffold42184 TRF Tandem_Repeat 60971 61088 157 + . . scaffold42184 TRF Tandem_Repeat 62393 62440 96 + . . scaffold42184 TRF Tandem_Repeat 67734 67776 86 + . . scaffold42184 GLEAN promoter 69773 70772 0.999734 + . ID=CGI_10006329; scaffold42184 GLEAN mRNA 70773 82812 0.999734 + . ID=CGI_10006329; scaffold42184 TRF Tandem_Repeat 77919 77949 62 + . . scaffold42184 TRF Tandem_Repeat 79655 79702 87 + . . scaffold42184 TRF Tandem_Repeat 80606 80794 301 + . . scaffold42184 GLEAN promoter 87946 88945 0.99935 + . ID=CGI_10006330; scaffold42184 GLEAN mRNA 88946 95629 0.99935 + . ID=CGI_10006330; scaffold42184 TRF Tandem_Repeat 96229 96593 428 + . . scaffold42184 TRF Tandem_Repeat 96771 96839 54 + . . scaffold42184 GLEAN mRNA 98807 102947 1 - . ID=CGI_10006331; scaffold42184 TRF Tandem_Repeat 100199 100226 56 + . . scaffold42184 GLEAN promoter 102948 103947 1 - . ID=CGI_10006331; scaffold42184 TRF Tandem_Repeat 103087 103677 749 + . . scaffold42184 WUBlastX LINE_RTE-X 105658 108003 1079 - . . scaffold42184 WUBlastX LINE_LOA 108808 108843 27 - . . scaffold42190 WUBlastX LTR_DIRS 7905 8384 86 + . . scaffold42190 WUBlastX LTR_DIRS 8563 8994 39 + . . scaffold42190 WUBlastX LTR_Gypsy 8897 9511 75 + . . scaffold42190 WUBlastX LTR_DIRS 9026 9676 286 + . . scaffold42190 WUBlastX LTR_DIRS 9631 10188 138 + . . scaffold42190 WUBlastX LTR_DIRS 10199 10633 187 + . . scaffold42190 TRF Tandem_Repeat 10751 11095 514 + . . scaffold42190 WUBlastX LTR_DIRS 11309 11797 106 + . . scaffold42190 WUBlastX LTR_DIRS 11743 12252 278 + . . scaffold42190 WUBlastX DNA_Sola 17605 17865 175 + . . scaffold42190 WUBlastX DNA_Sola 17611 17970 83 + . . scaffold42190 WUBlastX DNA_Sola 17998 18282 28 + . . scaffold42190 WUBlastX DNA_Sola 18052 18282 73 + . . scaffold42190 WUBlastX DNA_Sola 18303 18356 24 + . . scaffold42190 TRF Tandem_Repeat 22353 22683 370 + . . scaffold42190 TRF Tandem_Repeat 39496 39545 100 + . . scaffold42190 WUBlastX DNA_Sola 54960 55484 51 - . . scaffold42190 WUBlastX DNA_Sola 54966 55226 109 - . . scaffold42190 WUBlastX DNA_Sola 55464 55805 105 - . . scaffold42190 WUBlastX DNA_Sola 55497 55784 115 - . . scaffold42190 TRF Tandem_Repeat 58192 58259 136 + . . scaffold42190 GLEAN mRNA 62327 86091 0.965588 - . ID=CGI_10006336; scaffold42190 TRF Tandem_Repeat 75243 75306 101 + . . scaffold42190 TRF Tandem_Repeat 75246 75306 95 + . . scaffold42190 GLEAN promoter 86092 87091 0.965588 - . ID=CGI_10006336; scaffold42190 GLEAN promoter 90011 91010 1 + . ID=CGI_10006337; scaffold42190 GLEAN mRNA 91011 91613 1 + . ID=CGI_10006337; scaffold42190 GLEAN mRNA 91737 98701 1 - . ID=CGI_10006338; scaffold42190 GLEAN promoter 96721 97720 0.456305 + . ID=CGI_10006339; scaffold42190 GLEAN mRNA 97721 124872 0.456305 + . ID=CGI_10006339; scaffold42190 TRF Tandem_Repeat 97999 98075 154 + . . scaffold42190 GLEAN promoter 98702 99701 1 - . ID=CGI_10006338; scaffold42190 TRF Tandem_Repeat 110767 110806 53 + . . scaffold42190 TRF Tandem_Repeat 110767 110803 65 + . . scaffold42190 TRF Tandem_Repeat 117136 117358 322 + . . scaffold42190 GLEAN mRNA 126648 141862 0.616442 - . ID=CGI_10006340; scaffold42190 GLEAN promoter 141863 142862 0.616442 - . ID=CGI_10006340; scaffold42190 WUBlastX LINE_L2 144980 145231 78 + . . scaffold42190 WUBlastX LINE_CR1-L2 145857 146375 48 + . . scaffold42190 WUBlastX LINE_CR1-L2 145968 146390 84 + . . scaffold42190 WUBlastX LINE_CR1-L2 146130 146390 112 + . . scaffold42190 TRF Tandem_Repeat 146398 146464 80 + . . scaffold42198 TRF Tandem_Repeat 7175 7211 56 + . . scaffold42198 TRF Tandem_Repeat 15621 15719 191 + . . scaffold42198 TRF Tandem_Repeat 19603 19633 62 + . . scaffold42198 TRF Tandem_Repeat 43544 43970 563 + . . scaffold42198 GLEAN mRNA 47466 48161 0.991146 - . ID=CGI_10006391; scaffold42198 GLEAN promoter 48162 49161 0.991146 - . ID=CGI_10006391; scaffold42198 GLEAN promoter 52475 53474 0.836235 + . ID=CGI_10006392; scaffold42198 GLEAN mRNA 53475 55454 0.836235 + . ID=CGI_10006392; scaffold42198 WUBlastX LINE_RTE-BovB 58222 58383 83 - . . scaffold42198 WUBlastX LINE_RTE-BovB 58370 58600 92 - . . scaffold42198 WUBlastX LINE_RTE-BovB 60075 60197 22 - . . scaffold42198 GLEAN promoter 64263 65262 0.481188 + . ID=CGI_10006393; scaffold42198 WUBlastX LINE_RTE-BovB 65206 65490 27 + . . scaffold42198 GLEAN mRNA 65263 65511 0.481188 + . ID=CGI_10006393; scaffold42198 WUBlastX LINE_RTE-BovB 65543 65824 134 + . . scaffold42198 WUBlastX LINE_RTE-BovB 65546 65917 82 + . . scaffold42198 TRF Tandem_Repeat 77255 77292 60 + . . scaffold42198 WUBlastX LTR_Gypsy 91593 91724 37 + . . scaffold42198 WUBlastX LTR_Gypsy 91629 91733 65 + . . scaffold42198 WUBlastX LTR_Gypsy 91647 91733 71 + . . scaffold42198 WUBlastX LTR_Gypsy 91733 92212 49 + . . scaffold42198 WUBlastX LTR_Gypsy 91733 91945 124 + . . scaffold42198 WUBlastX LTR_Gypsy 91951 92136 117 + . . scaffold42198 WUBlastX LTR_Gypsy 91951 92106 128 + . . scaffold42198 TRF Tandem_Repeat 101821 102527 605 + . . scaffold42198 GLEAN promoter 104544 105543 0.550989 + . ID=CGI_10006394; scaffold42198 GLEAN mRNA 105544 106350 0.550989 + . ID=CGI_10006394; scaffold42198 TRF Tandem_Repeat 107920 107963 88 + . . scaffold42198 TRF Tandem_Repeat 110981 111033 106 + . . scaffold42198 WUBlastX LINE_L1-Tx1 112818 113330 96 + . . scaffold42198 WUBlastX LINE_L1-Tx1 112896 113459 230 + . . scaffold42198 WUBlastX LINE_L1-Tx1 113348 113896 429 + . . scaffold42198 WUBlastX LINE_L1-Tx1 113940 115535 269 + . . scaffold42198 TRF Tandem_Repeat 119178 119286 182 + . . scaffold42198 TRF Tandem_Repeat 141446 141496 102 + . . scaffold42198 TRF Tandem_Repeat 143817 143869 106 + . . scaffold42198 TRF Tandem_Repeat 145907 145940 52 + . . scaffold42198 TRF Tandem_Repeat 147203 147269 80 + . . scaffold422 WUBlastX DNA_hAT-Tip100 696 1565 372 + . . scaffold422 WUBlastX DNA_hAT-Tip100 840 1574 440 + . . scaffold422 WUBlastX DNA_hAT-Tip100 1514 2890 743 + . . scaffold422 WUBlastX DNA_hAT-Tip100 1577 3127 725 + . . scaffold422 WUBlastX LINE_L1 3492 3770 22 + . . scaffold422 WUBlastX LINE_L1-Tx1 3594 3956 93 + . . scaffold422 WUBlastX LINE_L1-Tx1 3642 3902 93 + . . scaffold422 TRF Tandem_Repeat 3970 4019 55 + . . scaffold422 WUBlastX LINE_L1-Tx1 4303 4698 113 + . . scaffold422 WUBlastX LINE_L1-Tx1 4652 5227 451 + . . scaffold422 WUBlastX LINE_L1-Tx1 5224 5721 218 + . . scaffold422 WUBlastX DNA_Harbinger 6241 6399 74 - . . scaffold422 WUBlastX DNA_Harbinger 7244 7513 97 - . . scaffold422 WUBlastX DNA_Harbinger 7304 7780 263 - . . scaffold422 GLEAN promoter 8308 9307 0.787573 + . ID=CGI_10018792; scaffold422 GLEAN mRNA 9308 32304 0.787573 + . ID=CGI_10018792; scaffold422 TRF Tandem_Repeat 16148 16182 70 + . . scaffold422 TRF Tandem_Repeat 20499 20525 54 + . . scaffold422 WUBlastX LINE_CR1-L2 35092 35436 20 - . . scaffold422 WUBlastX LINE_L1-Tx1 35092 35376 34 - . . scaffold422 TRF Tandem_Repeat 40955 41018 121 + . . scaffold422 TRF Tandem_Repeat 41066 41093 56 + . . scaffold422 TRF Tandem_Repeat 52903 52974 137 + . . scaffold422 TRF Tandem_Repeat 65394 65428 52 + . . scaffold422 TRF Tandem_Repeat 68716 68753 76 + . . scaffold422 TRF Tandem_Repeat 81503 81554 104 + . . scaffold422 TRF Tandem_Repeat 82523 82554 64 + . . scaffold422 TRF Tandem_Repeat 92373 92397 50 + . . scaffold422 WUBlastX DNA_TcMar-Tc1 95176 95577 193 - . . scaffold422 WUBlastX DNA_TcMar-Tc1 95576 95752 52 - . . scaffold422 WUBlastX DNA_TcMar-Tc1 95585 95809 35 - . . scaffold422 GLEAN promoter 102167 103166 0.950626 + . ID=CGI_10018793; scaffold422 GLEAN mRNA 103167 105272 0.950626 + . ID=CGI_10018793; scaffold422 TRF Tandem_Repeat 106184 107298 243 + . . scaffold422 TRF Tandem_Repeat 106184 106935 358 + . . scaffold422 GLEAN mRNA 109126 114523 1 - . ID=CGI_10018794; scaffold422 TRF Tandem_Repeat 112162 112320 192 + . . scaffold422 GLEAN promoter 114524 115523 1 - . ID=CGI_10018794; scaffold422 GLEAN mRNA 114938 133622 0.999998 - . ID=CGI_10018795; scaffold422 WUBlastX LINE_L2 117827 118369 141 + . . scaffold422 GLEAN promoter 133623 134622 0.999998 - . ID=CGI_10018795; scaffold422 TRF Tandem_Repeat 133650 135105 1510 + . . scaffold422 TRF Tandem_Repeat 138459 138964 732 + . . scaffold422 WUBlastX LINE_RTE-X 141838 141981 62 - . . scaffold422 GLEAN promoter 159298 160297 0.990195 + . ID=CGI_10018796; scaffold422 TRF Tandem_Repeat 159345 159372 56 + . . scaffold422 GLEAN mRNA 160298 168038 0.990195 + . ID=CGI_10018796; scaffold422 TRF Tandem_Repeat 163671 163857 187 + . . scaffold422 TRF Tandem_Repeat 164562 164668 74 + . . scaffold422 GLEAN mRNA 170343 171212 0.999392 - . ID=CGI_10018797; scaffold422 GLEAN promoter 171213 172212 0.999392 - . ID=CGI_10018797; scaffold422 TRF Tandem_Repeat 172147 172191 90 + . . scaffold422 GLEAN promoter 174950 175949 0.980281 + . ID=CGI_10018798; scaffold422 GLEAN mRNA 175950 190221 0.980281 + . ID=CGI_10018798; scaffold422 TRF Tandem_Repeat 181152 181180 58 + . . scaffold422 TRF Tandem_Repeat 184792 184861 140 + . . scaffold422 TRF Tandem_Repeat 184799 184860 70 + . . scaffold422 WUBlastX LINE_RTE-X 185389 185700 45 - . . scaffold422 WUBlastX LINE_RTE-X 185470 185691 80 - . . scaffold422 WUBlastX LINE_RTE-X 185733 186137 51 - . . scaffold422 WUBlastX LINE_RTE-X 186179 186307 24 - . . scaffold422 WUBlastX LINE_RTE-X 186206 186307 39 - . . scaffold422 WUBlastX LINE_RTE-X 186218 186340 23 - . . scaffold422 WUBlastX LINE_RTE-X 189465 189770 27 - . . scaffold422 WUBlastX LINE_RTE-X 189685 189942 40 - . . scaffold422 WUBlastX LINE_RTE-X 189745 189939 50 - . . scaffold422 WUBlastX LINE_RTE-X 189784 189939 59 - . . scaffold422 TRF Tandem_Repeat 193604 193793 371 + . . scaffold422 GLEAN mRNA 193941 195149 0.999984 - . ID=CGI_10018799; scaffold422 GLEAN promoter 195150 196149 0.999984 - . ID=CGI_10018799; scaffold422 TRF Tandem_Repeat 204629 205048 276 + . . scaffold422 GLEAN mRNA 205823 206968 0.999572 - . ID=CGI_10018800; scaffold422 GLEAN promoter 206969 207968 0.999572 - . ID=CGI_10018800; scaffold422 TRF Tandem_Repeat 211227 211303 117 + . . scaffold422 TRF Tandem_Repeat 211229 211301 78 + . . scaffold422 GLEAN promoter 211947 212946 0.993907 + . ID=CGI_10018801; scaffold422 GLEAN mRNA 212947 222245 0.993907 + . ID=CGI_10018801; scaffold422 TRF Tandem_Repeat 217149 217249 61 + . . scaffold422 TRF Tandem_Repeat 217682 217845 129 + . . scaffold422 TRF Tandem_Repeat 219116 219460 138 + . . scaffold422 TRF Tandem_Repeat 219156 219460 195 + . . scaffold422 TRF Tandem_Repeat 219214 220531 771 + . . scaffold422 TRF Tandem_Repeat 219241 220547 682 + . . scaffold422 TRF Tandem_Repeat 219417 219804 253 + . . scaffold422 TRF Tandem_Repeat 219671 220521 461 + . . scaffold422 TRF Tandem_Repeat 219809 220547 746 + . . scaffold422 TRF Tandem_Repeat 220897 220991 151 + . . scaffold422 WUBlastX DNA_En-Spm 224676 226007 20 - . . scaffold422 WUBlastX DNA_En-Spm 224928 225839 285 - . . scaffold422 WUBlastX DNA_En-Spm 224931 226091 209 - . . scaffold422 GLEAN promoter 233314 234313 1 + . ID=CGI_10018802; scaffold422 GLEAN mRNA 234314 238251 1 + . ID=CGI_10018802; scaffold422 TRF Tandem_Repeat 235042 235311 441 + . . scaffold422 TRF Tandem_Repeat 235680 236094 521 + . . scaffold422 GLEAN promoter 238002 239001 0.611438 + . ID=CGI_10018803; scaffold422 GLEAN mRNA 239002 240136 0.611438 + . ID=CGI_10018803; scaffold422 TRF Tandem_Repeat 239424 239524 107 + . . scaffold422 TRF Tandem_Repeat 239514 239587 130 + . . scaffold422 TRF Tandem_Repeat 239514 239587 76 + . . scaffold422 GLEAN promoter 239964 240963 0.966645 + . ID=CGI_10018804; scaffold422 GLEAN mRNA 240964 245401 0.966645 + . ID=CGI_10018804; scaffold422 TRF Tandem_Repeat 242944 243061 218 + . . scaffold422 TRF Tandem_Repeat 243451 243503 106 + . . scaffold422 TRF Tandem_Repeat 245106 245165 120 + . . scaffold422 TRF Tandem_Repeat 246174 246262 169 + . . scaffold422 TRF Tandem_Repeat 251677 252121 615 + . . scaffold422 TRF Tandem_Repeat 251699 252121 487 + . . scaffold422 TRF Tandem_Repeat 254757 255138 577 + . . scaffold422 TRF Tandem_Repeat 282982 283204 209 + . . scaffold422 GLEAN mRNA 284593 286595 1 - . ID=CGI_10018805; scaffold422 WUBlastX LINE_Penelope 284899 285276 20 - . . scaffold422 GLEAN promoter 286596 287595 1 - . ID=CGI_10018805; scaffold422 GLEAN mRNA 289885 299319 1 - . ID=CGI_10018806; scaffold422 WUBlastX LINE_L1 289960 290376 24 - . . scaffold422 GLEAN promoter 299320 300319 1 - . ID=CGI_10018806; scaffold422 TRF Tandem_Repeat 302233 302350 182 + . . scaffold422 GLEAN mRNA 306406 306759 1 - . ID=CGI_10018807; scaffold422 GLEAN promoter 306760 307759 1 - . ID=CGI_10018807; scaffold422 TRF Tandem_Repeat 320648 320753 185 + . . scaffold422 TRF Tandem_Repeat 327362 327684 583 + . . scaffold422 GLEAN mRNA 336951 337577 0.965598 - . ID=CGI_10018808; scaffold422 GLEAN promoter 337578 338577 0.965598 - . ID=CGI_10018808; scaffold422 TRF Tandem_Repeat 338370 338407 60 + . . scaffold422 GLEAN promoter 339952 340951 0.924006 + . ID=CGI_10018809; scaffold422 GLEAN mRNA 340952 346385 0.924006 + . ID=CGI_10018809; scaffold422 TRF Tandem_Repeat 343489 343549 59 + . . scaffold422 TRF Tandem_Repeat 345476 345514 78 + . . scaffold422 TRF Tandem_Repeat 346956 348551 1843 + . . scaffold422 TRF Tandem_Repeat 346956 348551 1843 + . . scaffold422 TRF Tandem_Repeat 346956 347147 283 + . . scaffold422 TRF Tandem_Repeat 347073 347324 425 + . . scaffold422 TRF Tandem_Repeat 347293 348551 1378 + . . scaffold422 WUBlastX LINE_L2 361281 361757 90 + . . scaffold422 WUBlastX LINE_L2 361365 362087 318 + . . scaffold422 TRF Tandem_Repeat 373228 373315 83 + . . scaffold422 TRF Tandem_Repeat 373495 373528 50 + . . scaffold422 TRF Tandem_Repeat 375547 376502 921 + . . scaffold422 TRF Tandem_Repeat 386602 386694 53 + . . scaffold422 WUBlastX LTR_Gypsy 402451 402537 22 + . . scaffold422 WUBlastX LTR_Gypsy 403074 403457 62 + . . scaffold422 WUBlastX LTR_Gypsy 403767 404183 123 - . . scaffold422 WUBlastX LTR_Gypsy 403884 404183 198 - . . scaffold422 WUBlastX LTR_Gypsy 404141 404470 37 - . . scaffold422 WUBlastX LTR_Gypsy 404141 404359 77 - . . scaffold422 WUBlastX LTR_Gypsy 404165 404413 57 - . . scaffold422 WUBlastX LTR_Gypsy 404641 404691 21 - . . scaffold422 TRF Tandem_Repeat 404965 404995 53 + . . scaffold422 TRF Tandem_Repeat 420264 420299 63 + . . scaffold422 WUBlastX DNA_Kolobok-IS4 430129 430539 23 + . . scaffold422 WUBlastX DNA_Kolobok-IS4 430622 431434 48 + . . scaffold422 WUBlastX DNA_IS4EU 430829 431539 71 + . . scaffold422 WUBlastX DNA_Kolobok-IS4 430907 431440 80 + . . scaffold422 WUBlastX DNA_IS4EU 432570 433109 201 - . . scaffold422 WUBlastX DNA_Kolobok-IS4 432675 433091 209 - . . scaffold422 WUBlastX DNA_Kolobok-IS4 433094 433327 65 - . . scaffold422 WUBlastX DNA_IS4EU 433157 433372 35 - . . scaffold422 TRF Tandem_Repeat 437935 438038 172 + . . scaffold422 TRF Tandem_Repeat 439966 440644 613 + . . scaffold422 GLEAN promoter 445032 446031 0.82731 + . ID=CGI_10018810; scaffold422 GLEAN mRNA 446032 446376 0.82731 + . ID=CGI_10018810; scaffold422 GLEAN mRNA 448810 453055 1 - . ID=CGI_10018811; scaffold422 TRF Tandem_Repeat 449142 449187 92 + . . scaffold422 GLEAN promoter 453056 454055 1 - . ID=CGI_10018811; scaffold422 TRF Tandem_Repeat 458311 458358 69 + . . scaffold422 GLEAN promoter 472684 473683 0.99854 + . ID=CGI_10018812; scaffold422 GLEAN mRNA 473684 477473 0.99854 + . ID=CGI_10018812; scaffold422 GLEAN mRNA 480417 482369 0.999995 - . ID=CGI_10018813; scaffold422 TRF Tandem_Repeat 481052 481360 408 + . . scaffold422 GLEAN promoter 482370 483369 0.999995 - . ID=CGI_10018813; scaffold422 TRF Tandem_Repeat 507102 507139 76 + . . scaffold422 TRF Tandem_Repeat 507139 507174 63 + . . scaffold422 TRF Tandem_Repeat 509866 509952 111 + . . scaffold422 TRF Tandem_Repeat 522595 522658 74 + . . scaffold422 WUBlastX LTR_Gypsy 523315 523527 192 + . . scaffold422 WUBlastX LTR_Gypsy 523318 523671 176 + . . scaffold422 WUBlastX LTR_Gypsy 525872 527020 336 + . . scaffold422 WUBlastX LTR_Gypsy 527026 527577 516 + . . scaffold422 WUBlastX LTR_Gypsy 527565 528173 521 + . . scaffold422 WUBlastX LTR_Gypsy 527565 528281 463 + . . scaffold422 WUBlastX LTR_Gypsy 528137 528649 271 + . . scaffold422 WUBlastX LTR_Gypsy 528633 528731 43 + . . scaffold422 WUBlastX LTR_Gypsy 528639 528854 21 + . . scaffold422 WUBlastX LTR_Gypsy 528651 528785 27 + . . scaffold422 WUBlastX LTR_Gypsy 528651 528749 28 + . . scaffold422 WUBlastX LTR_Gypsy 528908 529009 23 + . . scaffold422 TRF Tandem_Repeat 530264 530402 133 + . . scaffold422 TRF Tandem_Repeat 543608 543680 69 + . . scaffold422 WUBlastX LTR_Pao 548380 548709 150 - . . scaffold422 WUBlastX LTR_Pao 548481 549599 164 - . . scaffold422 WUBlastX LTR_Pao 548724 551546 1092 - . . scaffold422 WUBlastX LTR_Pao 550518 551771 724 - . . scaffold422 WUBlastX LTR_Pao 550680 551966 104 - . . scaffold422 WUBlastX LTR_Pao 551934 552032 21 - . . scaffold422 TRF Tandem_Repeat 562318 562374 96 + . . scaffold42208 GLEAN promoter 4204 5203 1 + . ID=CGI_10006348; scaffold42208 GLEAN mRNA 5204 7669 1 + . ID=CGI_10006348; scaffold42208 TRF Tandem_Repeat 10334 10376 86 + . . scaffold42208 TRF Tandem_Repeat 12262 12301 80 + . . scaffold42208 GLEAN promoter 18017 19016 0.558382 + . ID=CGI_10006349; scaffold42208 GLEAN mRNA 19017 24349 0.558382 + . ID=CGI_10006349; scaffold42208 TRF Tandem_Repeat 23742 23856 83 + . . scaffold42208 TRF Tandem_Repeat 35006 35165 110 + . . scaffold42208 TRF Tandem_Repeat 35009 35217 319 + . . scaffold42208 TRF Tandem_Repeat 35022 35183 105 + . . scaffold42208 TRF Tandem_Repeat 35848 35915 136 + . . scaffold42208 TRF Tandem_Repeat 37066 37111 92 + . . scaffold42208 TRF Tandem_Repeat 37517 37631 122 + . . scaffold42208 TRF Tandem_Repeat 37517 37629 126 + . . scaffold42208 TRF Tandem_Repeat 37517 37631 122 + . . scaffold42208 TRF Tandem_Repeat 38577 38607 62 + . . scaffold42208 GLEAN mRNA 40222 44314 0.99733 - . ID=CGI_10006350; scaffold42208 WUBlastX LINE_CR1-L2 42531 42701 50 + . . scaffold42208 TRF Tandem_Repeat 43172 43205 68 + . . scaffold42208 GLEAN promoter 44315 45314 0.99733 - . ID=CGI_10006350; scaffold42208 TRF Tandem_Repeat 47467 47522 112 + . . scaffold42208 TRF Tandem_Repeat 49355 49415 122 + . . scaffold42208 TRF Tandem_Repeat 58503 58554 104 + . . scaffold42208 GLEAN promoter 58629 59628 1 + . ID=CGI_10006351; scaffold42208 GLEAN mRNA 59629 68527 1 + . ID=CGI_10006351; scaffold42208 TRF Tandem_Repeat 64771 64832 117 + . . scaffold42208 TRF Tandem_Repeat 80317 80689 288 + . . scaffold42208 TRF Tandem_Repeat 86513 86554 84 + . . scaffold42208 TRF Tandem_Repeat 95792 95852 59 + . . scaffold42208 WUBlastX LTR_ERV1 97119 97796 111 + . . scaffold42208 WUBlastX LTR_Gypsy 97221 97946 513 + . . scaffold42208 WUBlastX LTR_Gypsy 97359 99491 1270 + . . scaffold42208 TRF Tandem_Repeat 107011 107077 89 + . . scaffold42208 TRF Tandem_Repeat 107572 107605 68 + . . scaffold42208 TRF Tandem_Repeat 107603 107635 66 + . . scaffold42208 TRF Tandem_Repeat 107823 107871 98 + . . scaffold42208 TRF Tandem_Repeat 110366 110432 89 + . . scaffold42208 TRF Tandem_Repeat 112016 112098 80 + . . scaffold42208 WUBlastX LTR_Gypsy 115907 119968 2703 + . . scaffold42208 WUBlastX LTR_Gypsy 116531 119818 2876 + . . scaffold42208 GLEAN promoter 120481 121480 0.221636 + . ID=CGI_10006352; scaffold42208 GLEAN mRNA 121481 127509 0.221636 + . ID=CGI_10006352; scaffold42208 TRF Tandem_Repeat 136432 136465 68 + . . scaffold42208 TRF Tandem_Repeat 150629 150706 140 + . . scaffold42210 WUBlastX LTR_Ngaro 1 183 119 - . . scaffold42210 WUBlastX LTR_Ngaro 185 1102 444 - . . scaffold42210 WUBlastX LTR_Ngaro 188 928 515 - . . scaffold42210 WUBlastX LTR_Ngaro 1328 1771 203 - . . scaffold42210 WUBlastX LTR_Ngaro 1352 2194 85 - . . scaffold42210 TRF Tandem_Repeat 7765 8567 1098 + . . scaffold42210 TRF Tandem_Repeat 45881 46781 1487 + . . scaffold42210 WUBlastX LTR_Gypsy 48839 48904 23 + . . scaffold42210 WUBlastX LTR_Gypsy 49162 49224 22 + . . scaffold42210 WUBlastX LTR_Gypsy 49320 49511 33 + . . scaffold42210 WUBlastX LTR_Gypsy 49368 49508 39 + . . scaffold42210 WUBlastX LTR_Gypsy 49398 49508 52 + . . scaffold42210 WUBlastX LTR_Gypsy-Cigr 49490 50353 370 + . . scaffold42210 WUBlastX LTR_Gypsy 50352 50588 88 + . . scaffold42210 WUBlastX LTR_Gypsy 50373 50741 34 + . . scaffold42210 TRF Tandem_Repeat 75075 75130 76 + . . scaffold42210 WUBlastX LINE_Penelope 83851 84387 44 - . . scaffold42210 GLEAN promoter 97005 98004 0.591926 + . ID=CGI_10006389; scaffold42210 TRF Tandem_Repeat 97048 97398 435 + . . scaffold42210 GLEAN mRNA 98005 111760 0.591926 + . ID=CGI_10006389; scaffold42210 TRF Tandem_Repeat 99548 99573 52 + . . scaffold42210 WUBlastX LINE_L1-Tx1 99791 99952 22 + . . scaffold42210 WUBlastX LINE_L1-Tx1 100191 100421 72 + . . scaffold42210 WUBlastX LINE_L1-Tx1 100436 101128 161 + . . scaffold42210 WUBlastX LINE_L1-Tx1 101065 101865 254 + . . scaffold42210 WUBlastX LINE_L1-Tx1 101356 101904 381 + . . scaffold42210 WUBlastX LINE_L1-Tx1 101869 103503 433 + . . scaffold42210 WUBlastX LINE_L1 103393 103527 28 + . . scaffold42210 TRF Tandem_Repeat 106792 106842 50 + . . scaffold42210 TRF Tandem_Repeat 106799 106842 54 + . . scaffold42210 TRF Tandem_Repeat 117386 117593 94 + . . scaffold42210 TRF Tandem_Repeat 133796 133826 62 + . . scaffold42210 GLEAN promoter 134243 135242 1 + . ID=CGI_10006390; scaffold42210 GLEAN mRNA 135243 142837 1 + . ID=CGI_10006390; scaffold42210 TRF Tandem_Repeat 138908 139128 194 + . . scaffold42210 TRF Tandem_Repeat 139155 139347 192 + . . scaffold42210 TRF Tandem_Repeat 139155 139347 170 + . . scaffold42210 TRF Tandem_Repeat 139413 139498 91 + . . scaffold42210 TRF Tandem_Repeat 140551 140597 94 + . . scaffold42210 TRF Tandem_Repeat 141418 141473 112 + . . scaffold42210 TRF Tandem_Repeat 144464 144544 162 + . . scaffold42210 TRF Tandem_Repeat 147480 147513 68 + . . scaffold42214 TRF Tandem_Repeat 7685 7727 86 + . . scaffold42214 TRF Tandem_Repeat 12317 12514 263 + . . scaffold42214 TRF Tandem_Repeat 12318 12537 187 + . . scaffold42214 TRF Tandem_Repeat 12445 12537 68 + . . scaffold42214 WUBlastX LTR_Gypsy 14315 15175 212 - . . scaffold42214 WUBlastX LTR_Gypsy 14762 15184 224 - . . scaffold42214 WUBlastX LTR_Gypsy 14762 15259 210 - . . scaffold42214 WUBlastX LTR_Gypsy 15723 15797 33 - . . scaffold42214 WUBlastX LTR_Gypsy 15726 15875 23 - . . scaffold42214 WUBlastX LTR_Gypsy-Cigr 15735 15809 40 - . . scaffold42214 WUBlastX LTR_Gypsy 15735 15833 36 - . . scaffold42214 TRF Tandem_Repeat 34108 34342 157 + . . scaffold42214 TRF Tandem_Repeat 34112 34342 196 + . . scaffold42214 TRF Tandem_Repeat 34377 34511 89 + . . scaffold42214 TRF Tandem_Repeat 37388 37423 65 + . . scaffold42214 GLEAN mRNA 40793 51967 0.814164 - . ID=CGI_10006408; scaffold42214 GLEAN promoter 51968 52967 0.814164 - . ID=CGI_10006408; scaffold42214 GLEAN promoter 52186 53185 1 + . ID=CGI_10006409; scaffold42214 GLEAN mRNA 53186 58360 1 + . ID=CGI_10006409; scaffold42214 GLEAN promoter 61924 62923 0.999415 + . ID=CGI_10006410; scaffold42214 GLEAN mRNA 62924 65281 0.999415 + . ID=CGI_10006410; scaffold42214 GLEAN mRNA 66215 72565 0.448988 - . ID=CGI_10006411; scaffold42214 GLEAN promoter 72384 73383 0.352998 + . ID=CGI_10006412; scaffold42214 GLEAN promoter 72566 73565 0.448988 - . ID=CGI_10006411; scaffold42214 GLEAN mRNA 73384 77568 0.352998 + . ID=CGI_10006412; scaffold42214 GLEAN mRNA 79679 86771 0.686007 - . ID=CGI_10006413; scaffold42214 GLEAN promoter 86772 87771 0.686007 - . ID=CGI_10006413; scaffold42214 TRF Tandem_Repeat 94095 95507 454 + . . scaffold42214 TRF Tandem_Repeat 94109 95488 580 + . . scaffold42214 TRF Tandem_Repeat 94133 95539 670 + . . scaffold42214 TRF Tandem_Repeat 94133 95077 532 + . . scaffold42214 TRF Tandem_Repeat 94527 95358 511 + . . scaffold42214 GLEAN promoter 94787 95786 0.989364 + . ID=CGI_10006414; scaffold42214 GLEAN mRNA 95787 105207 0.989364 + . ID=CGI_10006414; scaffold42214 GLEAN mRNA 97947 105054 0.495572 - . ID=CGI_10006415; scaffold42214 GLEAN promoter 105055 106054 0.495572 - . ID=CGI_10006415; scaffold42214 GLEAN promoter 108137 109136 0.999424 + . ID=CGI_10006416; scaffold42214 GLEAN mRNA 109137 114780 0.999424 + . ID=CGI_10006416; scaffold42214 TRF Tandem_Repeat 111376 111424 89 + . . scaffold42214 GLEAN mRNA 115824 117957 0.999798 - . ID=CGI_10006417; scaffold42214 GLEAN promoter 117958 118957 0.999798 - . ID=CGI_10006417; scaffold42214 TRF Tandem_Repeat 118081 118122 84 + . . scaffold42214 GLEAN mRNA 121051 125560 0.998076 - . ID=CGI_10006418; scaffold42214 GLEAN promoter 125561 126560 0.998076 - . ID=CGI_10006418; scaffold42214 TRF Tandem_Repeat 129934 129980 94 + . . scaffold42214 GLEAN promoter 130875 131874 0.593342 + . ID=CGI_10006419; scaffold42214 TRF Tandem_Repeat 130919 130961 77 + . . scaffold42214 GLEAN mRNA 131875 148668 0.593342 + . ID=CGI_10006419; scaffold42214 TRF Tandem_Repeat 132647 132700 101 + . . scaffold42226 WUBlastX LTR_Gypsy 4743 5915 890 - . . scaffold42226 WUBlastX LTR_Gypsy 5933 6367 394 - . . scaffold42226 WUBlastX LTR_Gypsy 6043 7350 397 - . . scaffold42226 WUBlastX LTR_Gypsy 6427 7425 996 - . . scaffold42226 WUBlastX LTR_Gypsy 7391 8269 502 - . . scaffold42226 WUBlastX LTR_Gypsy 8248 8382 53 - . . scaffold42226 WUBlastX LTR_Gypsy 8251 8421 36 - . . scaffold42226 WUBlastX LTR_Gypsy 8385 8471 22 - . . scaffold42226 TRF Tandem_Repeat 9148 9970 1126 + . . scaffold42226 TRF Tandem_Repeat 9148 9970 1126 + . . scaffold42226 GLEAN mRNA 10669 43955 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 15269 17011 2521 + . . scaffold42226 TRF Tandem_Repeat 22318 22361 52 + . . scaffold42226 TRF Tandem_Repeat 24683 24740 107 + . . scaffold42226 TRF Tandem_Repeat 25284 25329 92 + . . scaffold42226 TRF Tandem_Repeat 33494 33624 246 + . . scaffold42226 TRF Tandem_Repeat 34785 34884 191 + . . scaffold42226 TRF Tandem_Repeat 37139 37893 568 + . . scaffold42226 TRF Tandem_Repeat 37139 37893 477 + . . scaffold42226 TRF Tandem_Repeat 37139 37893 340 + . . scaffold42226 TRF Tandem_Repeat 37464 37893 577 + . . scaffold42226 TRF Tandem_Repeat 39006 39202 170 + . . scaffold42226 GLEAN promoter 41158 42157 0.999993 + . ID=CGI_10006361; scaffold42226 GLEAN mRNA 42158 60142 0.999993 + . ID=CGI_10006361; scaffold42226 GLEAN promoter 43956 44955 0.902884 - . ID=CGI_10006360; scaffold42226 TRF Tandem_Repeat 44503 44728 389 + . . scaffold42226 TRF Tandem_Repeat 57296 57697 544 + . . scaffold42226 TRF Tandem_Repeat 58841 59531 622 + . . scaffold42226 TRF Tandem_Repeat 58867 59506 462 + . . scaffold42226 TRF Tandem_Repeat 59185 59506 365 + . . scaffold42226 TRF Tandem_Repeat 60971 61276 454 + . . scaffold42226 GLEAN mRNA 64497 89814 0.880293 - . ID=CGI_10006362; scaffold42226 TRF Tandem_Repeat 75585 76289 265 + . . scaffold42226 TRF Tandem_Repeat 75593 76289 821 + . . scaffold42226 TRF Tandem_Repeat 77713 78163 595 + . . scaffold42226 TRF Tandem_Repeat 78522 78662 208 + . . scaffold42226 TRF Tandem_Repeat 81252 81403 208 + . . scaffold42226 TRF Tandem_Repeat 81260 82284 1088 + . . scaffold42226 TRF Tandem_Repeat 81483 82354 814 + . . scaffold42226 TRF Tandem_Repeat 81499 82373 766 + . . scaffold42226 TRF Tandem_Repeat 82647 82730 64 + . . scaffold42226 TRF Tandem_Repeat 82915 83180 198 + . . scaffold42226 TRF Tandem_Repeat 83046 83130 80 + . . scaffold42226 TRF Tandem_Repeat 84150 84187 58 + . . scaffold42226 GLEAN promoter 89815 90814 0.880293 - . ID=CGI_10006362; scaffold42226 WUBlastX LINE_RTE-X 92037 92342 80 - . . scaffold42226 WUBlastX LINE_RTE-X 92064 92471 54 - . . scaffold42226 WUBlastX LINE_RTE-X 92163 92396 60 - . . scaffold42226 WUBlastX LINE_RTE-X 92456 92932 49 - . . scaffold42226 WUBlastX LINE_RTE-X 92507 92800 93 - . . scaffold42226 WUBlastX LINE_RTE-X 92516 92878 81 - . . scaffold42226 TRF Tandem_Repeat 95404 96308 991 + . . scaffold42226 GLEAN promoter 97841 98840 0.999648 + . ID=CGI_10006363; scaffold42226 TRF Tandem_Repeat 98597 98727 244 + . . scaffold42226 GLEAN mRNA 98841 105388 0.999648 + . ID=CGI_10006363; scaffold42226 TRF Tandem_Repeat 101683 101825 153 + . . scaffold42226 GLEAN promoter 106394 107393 0.842903 + . ID=CGI_10006364; scaffold42226 TRF Tandem_Repeat 106456 106493 51 + . . scaffold42226 GLEAN mRNA 107394 126585 0.842903 + . ID=CGI_10006364; scaffold42226 WUBlastX LINE_RTE-X 112804 113028 53 + . . scaffold42226 WUBlastX DNA_Kolobok 119075 119317 139 + . . scaffold42226 WUBlastX DNA_Kolobok 120356 120592 100 - . . scaffold42226 WUBlastX DNA_Kolobok 120758 120952 72 - . . scaffold42226 WUBlastX DNA_Kolobok 121087 121302 41 - . . scaffold42226 WUBlastX DNA_Kolobok 121366 121638 87 - . . scaffold42226 WUBlastX DNA_Kolobok 121725 121985 148 - . . scaffold42226 WUBlastX DNA_Kolobok 122100 122381 96 - . . scaffold42226 GLEAN mRNA 122442 125261 0.956424 - . ID=CGI_10006365; scaffold42226 GLEAN promoter 125262 126261 0.956424 - . ID=CGI_10006365; scaffold42226 WUBlastX LTR_Gypsy 129460 129735 52 + . . scaffold42226 WUBlastX LTR_Gypsy 129556 129744 69 + . . scaffold42226 WUBlastX LTR_Gypsy-Cigr 129719 129889 49 + . . scaffold42226 WUBlastX LTR_Gypsy 129939 130070 32 + . . scaffold42226 WUBlastX LINE_L1-Tx1 138252 141902 1026 - . . scaffold42226 WUBlastX LINE_L2 142438 142503 20 - . . scaffold42226 TRF Tandem_Repeat 142890 144212 715 + . . scaffold42226 TRF Tandem_Repeat 144918 146801 1200 + . . scaffold42226 TRF Tandem_Repeat 145021 146072 445 + . . scaffold42226 TRF Tandem_Repeat 148297 148347 93 + . . scaffold42236 GLEAN mRNA 3874 6785 0.990675 - . ID=CGI_10006395; scaffold42236 GLEAN promoter 6786 7785 0.990675 - . ID=CGI_10006395; scaffold42236 GLEAN promoter 7994 8993 0.999984 + . ID=CGI_10006396; scaffold42236 GLEAN mRNA 8994 10220 0.999984 + . ID=CGI_10006396; scaffold42236 GLEAN mRNA 12895 32747 0.500069 - . ID=CGI_10006397; scaffold42236 GLEAN promoter 19606 20605 0.783967 + . ID=CGI_10006398; scaffold42236 GLEAN mRNA 20606 22294 0.783967 + . ID=CGI_10006398; scaffold42236 WUBlastX LINE_L1 20969 21355 34 + . . scaffold42236 GLEAN promoter 32200 33199 1 + . ID=CGI_10006399; scaffold42236 TRF Tandem_Repeat 32269 32412 53 + . . scaffold42236 TRF Tandem_Repeat 32291 32413 108 + . . scaffold42236 GLEAN promoter 32748 33747 0.500069 - . ID=CGI_10006397; scaffold42236 GLEAN mRNA 33200 49583 1 + . ID=CGI_10006399; scaffold42236 GLEAN promoter 53014 54013 1 + . ID=CGI_10006400; scaffold42236 GLEAN mRNA 54014 55997 1 + . ID=CGI_10006400; scaffold42236 GLEAN promoter 57739 58738 0.999655 + . ID=CGI_10006401; scaffold42236 GLEAN mRNA 58739 60854 0.999655 + . ID=CGI_10006401; scaffold42236 GLEAN promoter 60119 61118 0.690954 + . ID=CGI_10006402; scaffold42236 TRF Tandem_Repeat 60153 60218 123 + . . scaffold42236 GLEAN mRNA 61119 61793 0.690954 + . ID=CGI_10006402; scaffold42236 TRF Tandem_Repeat 69513 69561 98 + . . scaffold42236 GLEAN promoter 69910 70909 0.690727 + . ID=CGI_10006403; scaffold42236 GLEAN mRNA 70910 88740 0.690727 + . ID=CGI_10006403; scaffold42236 TRF Tandem_Repeat 93518 93790 427 + . . scaffold42236 GLEAN mRNA 94577 96250 0.531613 - . ID=CGI_10006404; scaffold42236 GLEAN promoter 96251 97250 0.531613 - . ID=CGI_10006404; scaffold42236 TRF Tandem_Repeat 98234 98407 224 + . . scaffold42236 TRF Tandem_Repeat 98621 98714 98 + . . scaffold42236 GLEAN mRNA 104296 112130 1 - . ID=CGI_10006405; scaffold42236 GLEAN promoter 111501 112500 0.999117 + . ID=CGI_10006406; scaffold42236 GLEAN promoter 112131 113130 1 - . ID=CGI_10006405; scaffold42236 GLEAN mRNA 112501 136266 0.999117 + . ID=CGI_10006406; scaffold42236 TRF Tandem_Repeat 115782 115822 82 + . . scaffold42236 WUBlastX DNA_hAT 119031 119102 35 + . . scaffold42236 WUBlastX DNA_hAT 119339 119560 160 + . . scaffold42236 WUBlastX DNA_hAT 126361 126456 54 + . . scaffold42236 WUBlastX DNA_hAT 126644 127126 127 + . . scaffold42236 WUBlastX DNA_hAT 127381 127524 47 + . . scaffold42236 WUBlastX DNA_hAT 129454 129585 56 + . . scaffold42236 WUBlastX DNA_hAT 129699 129764 23 + . . scaffold42236 WUBlastX DNA_hAT 129980 130369 289 + . . scaffold42236 WUBlastX DNA_hAT 132561 132698 68 + . . scaffold42236 GLEAN mRNA 137592 151418 1 - . ID=CGI_10006407; scaffold42236 GLEAN promoter 151419 151780 1 - . ID=CGI_10006407; scaffold42246 GLEAN promoter 1 58 0.999994 + . ID=CGI_10006473; scaffold42246 GLEAN mRNA 59 5622 0.999994 + . ID=CGI_10006473; scaffold42246 GLEAN promoter 4727 5726 0.65558 + . ID=CGI_10006474; scaffold42246 GLEAN mRNA 5727 48525 0.65558 + . ID=CGI_10006474; scaffold42246 TRF Tandem_Repeat 11598 11718 138 + . . scaffold42246 TRF Tandem_Repeat 13583 13635 90 + . . scaffold42246 TRF Tandem_Repeat 19369 19565 148 + . . scaffold42246 WUBlastX DNA_hAT 43911 44600 139 + . . scaffold42246 TRF Tandem_Repeat 45098 45452 264 + . . scaffold42246 WUBlastX DNA_hAT 46676 46780 33 + . . scaffold42246 WUBlastX DNA_hAT 47144 47350 47 + . . scaffold42246 TRF Tandem_Repeat 48669 48703 70 + . . scaffold42246 GLEAN promoter 51379 52378 0.99004 + . ID=CGI_10006475; scaffold42246 GLEAN mRNA 52379 62143 0.99004 + . ID=CGI_10006475; scaffold42246 TRF Tandem_Repeat 53625 53669 90 + . . scaffold42246 TRF Tandem_Repeat 55460 55515 62 + . . scaffold42246 TRF Tandem_Repeat 57309 57345 58 + . . scaffold42246 GLEAN mRNA 61481 99048 0.722497 - . ID=CGI_10006476; scaffold42246 TRF Tandem_Repeat 62939 62981 77 + . . scaffold42246 TRF Tandem_Repeat 75688 75739 104 + . . scaffold42246 TRF Tandem_Repeat 80065 80117 106 + . . scaffold42246 TRF Tandem_Repeat 83912 83960 98 + . . scaffold42246 TRF Tandem_Repeat 87393 87423 62 + . . scaffold42246 GLEAN promoter 99049 100048 0.722497 - . ID=CGI_10006476; scaffold42246 GLEAN mRNA 103725 113761 0.999465 - . ID=CGI_10006477; scaffold42246 GLEAN promoter 113762 114761 0.999465 - . ID=CGI_10006477; scaffold42246 GLEAN mRNA 113812 134682 0.810146 - . ID=CGI_10006478; scaffold42246 TRF Tandem_Repeat 118060 118091 55 + . . scaffold42246 TRF Tandem_Repeat 128260 128285 52 + . . scaffold42246 TRF Tandem_Repeat 134037 134088 68 + . . scaffold42246 GLEAN promoter 134683 135682 0.810146 - . ID=CGI_10006478; scaffold42246 TRF Tandem_Repeat 138988 139673 893 + . . scaffold42246 TRF Tandem_Repeat 139678 139726 62 + . . scaffold42246 TRF Tandem_Repeat 141215 142263 1387 + . . scaffold42246 TRF Tandem_Repeat 144158 144199 50 + . . scaffold42246 TRF Tandem_Repeat 145004 145091 59 + . . scaffold42246 TRF Tandem_Repeat 146063 146987 1214 + . . scaffold42246 TRF Tandem_Repeat 151785 153121 2140 + . . scaffold42252 TRF Tandem_Repeat 10 244 276 + . . scaffold42252 WUBlastX LINE_RTE-X 1203 1712 45 - . . scaffold42252 WUBlastX LINE_RTE-X 1284 1628 88 - . . scaffold42252 WUBlastX LINE_RTE-X 1326 1712 60 - . . scaffold42252 TRF Tandem_Repeat 17519 17566 87 + . . scaffold42252 TRF Tandem_Repeat 19870 19995 128 + . . scaffold42252 TRF Tandem_Repeat 20038 20193 160 + . . scaffold42252 TRF Tandem_Repeat 23413 23457 90 + . . scaffold42252 TRF Tandem_Repeat 38652 38694 86 + . . scaffold42252 TRF Tandem_Repeat 45745 45781 56 + . . scaffold42252 TRF Tandem_Repeat 48254 48309 112 + . . scaffold42252 GLEAN promoter 50212 51211 1 + . ID=CGI_10006466; scaffold42252 GLEAN mRNA 51212 56965 1 + . ID=CGI_10006466; scaffold42252 GLEAN mRNA 65997 89142 0.811055 - . ID=CGI_10006467; scaffold42252 TRF Tandem_Repeat 79910 80616 914 + . . scaffold42252 TRF Tandem_Repeat 80621 80670 64 + . . scaffold42252 TRF Tandem_Repeat 80624 80675 59 + . . scaffold42252 GLEAN promoter 89143 90142 0.811055 - . ID=CGI_10006467; scaffold42252 TRF Tandem_Repeat 91841 91900 120 + . . scaffold42252 WUBlastX LINE_RTE-X 93450 93584 48 - . . scaffold42252 TRF Tandem_Repeat 99172 99274 77 + . . scaffold42252 TRF Tandem_Repeat 99545 99581 58 + . . scaffold42252 TRF Tandem_Repeat 99822 99929 105 + . . scaffold42252 TRF Tandem_Repeat 103382 103538 314 + . . scaffold42252 GLEAN promoter 108064 109063 0.937832 + . ID=CGI_10006468; scaffold42252 GLEAN mRNA 109064 114850 0.937832 + . ID=CGI_10006468; scaffold42252 GLEAN mRNA 120169 122676 0.999111 - . ID=CGI_10006469; scaffold42252 GLEAN promoter 122677 123676 0.999111 - . ID=CGI_10006469; scaffold42252 TRF Tandem_Repeat 127026 127057 64 + . . scaffold42252 TRF Tandem_Repeat 127295 127881 672 + . . scaffold42252 GLEAN mRNA 128385 131301 0.839846 - . ID=CGI_10006470; scaffold42252 GLEAN promoter 131302 132301 0.839846 - . ID=CGI_10006470; scaffold42252 GLEAN promoter 136942 137941 1 + . ID=CGI_10006471; scaffold42252 TRF Tandem_Repeat 137799 137869 142 + . . scaffold42252 GLEAN mRNA 137942 142447 1 + . ID=CGI_10006471; scaffold42252 TRF Tandem_Repeat 141342 141426 154 + . . scaffold42252 GLEAN mRNA 142930 153336 0.996445 - . ID=CGI_10006472; scaffold42252 TRF Tandem_Repeat 145734 145801 136 + . . scaffold42252 TRF Tandem_Repeat 145913 145937 50 + . . scaffold42252 TRF Tandem_Repeat 148532 148657 82 + . . scaffold42252 GLEAN promoter 153337 153349 0.996445 - . ID=CGI_10006472; scaffold42262 GLEAN promoter 7536 8535 1 + . ID=CGI_10006479; scaffold42262 GLEAN mRNA 8536 17321 1 + . ID=CGI_10006479; scaffold42262 GLEAN mRNA 22302 23401 0.839148 - . ID=CGI_10006480; scaffold42262 GLEAN promoter 23402 24401 0.839148 - . ID=CGI_10006480; scaffold42262 GLEAN promoter 23755 24754 0.235117 + . ID=CGI_10006481; scaffold42262 GLEAN mRNA 24755 38147 0.235117 + . ID=CGI_10006481; scaffold42262 GLEAN promoter 40142 41141 0.318722 + . ID=CGI_10006482; scaffold42262 GLEAN mRNA 41142 66350 0.318722 + . ID=CGI_10006482; scaffold42262 GLEAN promoter 69025 70024 0.978562 + . ID=CGI_10006483; scaffold42262 GLEAN mRNA 70025 81422 0.978562 + . ID=CGI_10006483; scaffold42262 GLEAN mRNA 79167 91074 1 - . ID=CGI_10006484; scaffold42262 GLEAN promoter 90317 91316 1 + . ID=CGI_10006485; scaffold42262 GLEAN promoter 91075 92074 1 - . ID=CGI_10006484; scaffold42262 GLEAN mRNA 91317 96745 1 + . ID=CGI_10006485; scaffold42262 GLEAN mRNA 99639 103182 1 - . ID=CGI_10006486; scaffold42262 GLEAN promoter 103183 104182 1 - . ID=CGI_10006486; scaffold42262 GLEAN mRNA 109784 118985 0.859778 - . ID=CGI_10006487; scaffold42262 GLEAN promoter 118325 119324 0.994743 + . ID=CGI_10006488; scaffold42262 GLEAN promoter 118986 119985 0.859778 - . ID=CGI_10006487; scaffold42262 GLEAN mRNA 119325 148991 0.994743 + . ID=CGI_10006488; scaffold42264 TRF Tandem_Repeat 1249 1612 341 + . . scaffold42264 TRF Tandem_Repeat 1252 1612 434 + . . scaffold42264 TRF Tandem_Repeat 2178 2436 329 + . . scaffold42264 TRF Tandem_Repeat 2186 2440 384 + . . scaffold42264 GLEAN mRNA 2943 14559 0.999998 - . ID=CGI_10006516; scaffold42264 TRF Tandem_Repeat 6609 6663 110 + . . scaffold42264 TRF Tandem_Repeat 8485 8691 414 + . . scaffold42264 TRF Tandem_Repeat 9944 9969 52 + . . scaffold42264 TRF Tandem_Repeat 10264 10298 70 + . . scaffold42264 GLEAN promoter 11788 12787 1 + . ID=CGI_10006517; scaffold42264 GLEAN mRNA 12788 13459 1 + . ID=CGI_10006517; scaffold42264 GLEAN promoter 14560 15559 0.999998 - . ID=CGI_10006516; scaffold42264 GLEAN mRNA 15359 15952 0.648541 - . ID=CGI_10006518; scaffold42264 GLEAN promoter 15953 16952 0.648541 - . ID=CGI_10006518; scaffold42264 WUBlastX DNA_IS4EU 56214 56336 56 - . . scaffold42264 TRF Tandem_Repeat 57174 57250 100 + . . scaffold42264 TRF Tandem_Repeat 57174 57250 100 + . . scaffold42264 TRF Tandem_Repeat 57176 57250 114 + . . scaffold42264 TRF Tandem_Repeat 59070 59123 108 + . . scaffold42264 TRF Tandem_Repeat 63625 63755 253 + . . scaffold42264 TRF Tandem_Repeat 66030 66162 149 + . . scaffold42264 TRF Tandem_Repeat 66807 67216 268 + . . scaffold42264 TRF Tandem_Repeat 66807 67217 315 + . . scaffold42264 TRF Tandem_Repeat 66881 67218 240 + . . scaffold42264 GLEAN promoter 76336 77335 0.999917 + . ID=CGI_10006519; scaffold42264 GLEAN mRNA 77336 78370 0.999917 + . ID=CGI_10006519; scaffold42264 WUBlastX LINE_L2 77375 77872 76 + . . scaffold42264 WUBlastX LINE_L2 77495 77944 47 + . . scaffold42264 TRF Tandem_Repeat 79049 79169 89 + . . scaffold42264 TRF Tandem_Repeat 79756 79814 118 + . . scaffold42264 TRF Tandem_Repeat 83577 83622 92 + . . scaffold42264 TRF Tandem_Repeat 92907 92962 112 + . . scaffold42264 TRF Tandem_Repeat 111629 111754 234 + . . scaffold42264 WUBlastX LINE_RTE-X 117176 117478 34 + . . scaffold42264 TRF Tandem_Repeat 117555 117593 78 + . . scaffold42264 WUBlastX LTR_Ngaro 130198 130356 39 + . . scaffold42264 WUBlastX LTR_Ngaro 130277 130669 82 + . . scaffold42264 WUBlastX LTR_Ngaro 130379 130636 119 + . . scaffold42264 WUBlastX LTR_Ngaro 130606 131220 68 + . . scaffold42264 WUBlastX LTR_Ngaro 130965 131522 64 + . . scaffold42264 WUBlastX LTR_Ngaro 131316 131522 93 + . . scaffold42264 TRF Tandem_Repeat 138436 138494 118 + . . scaffold42264 TRF Tandem_Repeat 151790 151878 178 + . . scaffold42268 GLEAN mRNA 1433 2169 0.998831 - . ID=CGI_10006558; scaffold42268 TRF Tandem_Repeat 1927 2006 112 + . . scaffold42268 TRF Tandem_Repeat 1930 2007 76 + . . scaffold42268 TRF Tandem_Repeat 1934 2002 74 + . . scaffold42268 GLEAN promoter 2170 3169 0.998831 - . ID=CGI_10006558; scaffold42268 TRF Tandem_Repeat 18087 18453 734 + . . scaffold42268 GLEAN promoter 18612 19611 1 + . ID=CGI_10006559; scaffold42268 GLEAN mRNA 19612 23167 1 + . ID=CGI_10006559; scaffold42268 GLEAN promoter 27982 28981 0.908319 + . ID=CGI_10006560; scaffold42268 GLEAN mRNA 28982 43214 0.908319 + . ID=CGI_10006560; scaffold42268 TRF Tandem_Repeat 43335 43386 104 + . . scaffold42268 GLEAN promoter 46725 47724 0.999988 + . ID=CGI_10006561; scaffold42268 GLEAN mRNA 47725 55173 0.999988 + . ID=CGI_10006561; scaffold42268 TRF Tandem_Repeat 57140 57174 70 + . . scaffold42268 TRF Tandem_Repeat 58144 58208 80 + . . scaffold42268 TRF Tandem_Repeat 62716 62763 96 + . . scaffold42268 WUBlastX LINE_RTE-X 72354 72563 49 - . . scaffold42268 WUBlastX LINE_RTE-X 72548 72838 93 - . . scaffold42268 WUBlastX LINE_L1 73822 74886 102 - . . scaffold42268 WUBlastX LINE_RTE-X 74020 74889 331 - . . scaffold42268 WUBlastX LINE_RTE-X 74773 74910 23 - . . scaffold42268 WUBlastX DNA_Kolobok-IS4 80896 81648 351 - . . scaffold42268 WUBlastX DNA_IS4EU 82186 82791 234 + . . scaffold42268 TRF Tandem_Repeat 84036 84068 57 + . . scaffold42268 TRF Tandem_Repeat 84943 84974 64 + . . scaffold42268 GLEAN mRNA 85738 88825 0.898673 - . ID=CGI_10006562; scaffold42268 GLEAN promoter 88826 89825 0.898673 - . ID=CGI_10006562; scaffold42268 WUBlastX DNA_IS4EU 88865 89437 79 - . . scaffold42268 WUBlastX DNA_IS4EU 88880 89707 43 - . . scaffold42268 TRF Tandem_Repeat 94985 95010 52 + . . scaffold42268 TRF Tandem_Repeat 95127 95869 975 + . . scaffold42268 TRF Tandem_Repeat 96754 96831 52 + . . scaffold42268 TRF Tandem_Repeat 97000 97123 67 + . . scaffold42268 WUBlastX DNA_Crypton 99915 100424 144 - . . scaffold42268 WUBlastX DNA_Crypton 100737 100940 75 - . . scaffold42268 TRF Tandem_Repeat 116953 116991 60 + . . scaffold42268 WUBlastX LINE_RTE-BovB 124204 124386 81 - . . scaffold42268 WUBlastX LINE_RTE-BovB 124350 124658 87 - . . scaffold42268 GLEAN promoter 124796 125795 0.955691 + . ID=CGI_10006563; scaffold42268 GLEAN mRNA 125796 135049 0.955691 + . ID=CGI_10006563; scaffold42268 WUBlastX DNA_TcMar-Tc1 127878 128183 42 + . . scaffold42268 TRF Tandem_Repeat 138395 138983 613 + . . scaffold42268 TRF Tandem_Repeat 139011 142158 3284 + . . scaffold42268 TRF Tandem_Repeat 144305 146011 1831 + . . scaffold42268 WUBlastX LTR_Copia 148464 149909 871 - . . scaffold42268 WUBlastX LTR_Copia 148467 150335 826 - . . scaffold42268 WUBlastX LTR_Copia 150336 152705 1470 - . . scaffold42268 WUBlastX LTR_Lenti 152580 152732 27 - . . scaffold42272 GLEAN promoter 2579 3578 0.559894 + . ID=CGI_10006520; scaffold42272 GLEAN mRNA 3579 4025 0.559894 + . ID=CGI_10006520; scaffold42272 GLEAN promoter 4456 5455 0.600933 + . ID=CGI_10006521; scaffold42272 GLEAN mRNA 5456 29886 0.600933 + . ID=CGI_10006521; scaffold42272 GLEAN promoter 32645 33644 0.97769 + . ID=CGI_10006522; scaffold42272 GLEAN mRNA 33645 52743 0.97769 + . ID=CGI_10006522; scaffold42272 GLEAN mRNA 64724 65681 1 - . ID=CGI_10006523; scaffold42272 GLEAN promoter 65682 66681 1 - . ID=CGI_10006523; scaffold42272 GLEAN mRNA 70722 85535 0.76699 - . ID=CGI_10006524; scaffold42272 GLEAN promoter 85536 86535 0.76699 - . ID=CGI_10006524; scaffold42272 GLEAN mRNA 99570 101160 1 - . ID=CGI_10006525; scaffold42272 GLEAN promoter 100637 101636 0.989199 + . ID=CGI_10006526; scaffold42272 GLEAN promoter 101161 102160 1 - . ID=CGI_10006525; scaffold42272 GLEAN mRNA 101637 105532 0.989199 + . ID=CGI_10006526; scaffold42272 GLEAN mRNA 108026 122577 1 - . ID=CGI_10006527; scaffold42272 GLEAN promoter 121658 122657 0.999374 + . ID=CGI_10006528; scaffold42272 GLEAN promoter 122578 123577 1 - . ID=CGI_10006527; scaffold42272 GLEAN mRNA 122658 127167 0.999374 + . ID=CGI_10006528; scaffold42272 GLEAN mRNA 129727 139151 1 - . ID=CGI_10006529; scaffold42272 GLEAN promoter 139152 140151 1 - . ID=CGI_10006529; scaffold42272 GLEAN mRNA 152918 154692 1 - . ID=CGI_10006530; scaffold42272 GLEAN promoter 154693 154918 1 - . ID=CGI_10006530; scaffold42274 GLEAN promoter 1 86 1 + . ID=CGI_10006508; scaffold42274 GLEAN mRNA 87 1801 1 + . ID=CGI_10006508; scaffold42274 GLEAN mRNA 8593 13901 0.722974 - . ID=CGI_10006509; scaffold42274 WUBlastX DNA_hAT 10319 10537 121 - . . scaffold42274 WUBlastX DNA_hAT 10945 11100 131 - . . scaffold42274 WUBlastX DNA_hAT 11459 11650 82 - . . scaffold42274 WUBlastX DNA_hAT 11875 11988 79 - . . scaffold42274 WUBlastX DNA_hAT 11905 12012 71 - . . scaffold42274 WUBlastX DNA_hAT 12507 12635 86 - . . scaffold42274 WUBlastX DNA_hAT 12912 13658 518 - . . scaffold42274 GLEAN promoter 13902 14901 0.722974 - . ID=CGI_10006509; scaffold42274 GLEAN mRNA 14018 19797 0.997647 - . ID=CGI_10006510; scaffold42274 GLEAN promoter 19798 20797 0.997647 - . ID=CGI_10006510; scaffold42274 TRF Tandem_Repeat 20359 20412 108 + . . scaffold42274 GLEAN mRNA 20698 28500 0.999634 - . ID=CGI_10006511; scaffold42274 GLEAN promoter 28501 29500 0.999634 - . ID=CGI_10006511; scaffold42274 TRF Tandem_Repeat 29581 29639 118 + . . scaffold42274 GLEAN promoter 44055 45054 0.998895 + . ID=CGI_10006512; scaffold42274 GLEAN mRNA 45055 72181 0.998895 + . ID=CGI_10006512; scaffold42274 TRF Tandem_Repeat 58010 58055 65 + . . scaffold42274 WUBlastX LINE_RTE-BovB 62498 62626 38 - . . scaffold42274 TRF Tandem_Repeat 77388 77412 50 + . . scaffold42274 GLEAN promoter 79170 80169 0.747668 + . ID=CGI_10006513; scaffold42274 GLEAN mRNA 80170 83788 0.747668 + . ID=CGI_10006513; scaffold42274 TRF Tandem_Repeat 87472 88265 1014 + . . scaffold42274 TRF Tandem_Repeat 91098 91198 94 + . . scaffold42274 TRF Tandem_Repeat 91238 91326 128 + . . scaffold42274 TRF Tandem_Repeat 92398 93105 802 + . . scaffold42274 WUBlastX DNA_Harbinger 126655 127068 120 + . . scaffold42274 WUBlastX DNA_Harbinger 126730 127083 147 + . . scaffold42274 WUBlastX DNA_Harbinger 127543 127683 28 + . . scaffold42274 WUBlastX DNA_Harbinger 127585 127692 53 + . . scaffold42274 WUBlastX DNA_Harbinger 127618 127707 50 + . . scaffold42274 WUBlastX DNA_Harbinger 127827 127940 63 + . . scaffold42274 WUBlastX DNA_Harbinger 128221 128481 83 + . . scaffold42274 TRF Tandem_Repeat 133574 133794 123 + . . scaffold42274 TRF Tandem_Repeat 133713 133811 119 + . . scaffold42274 GLEAN mRNA 134492 134902 0.64255 - . ID=CGI_10006515; scaffold42274 GLEAN promoter 134903 135902 0.64255 - . ID=CGI_10006515; scaffold42274 WUBlastX LINE_Penelope 148943 149656 55 + . . scaffold42274 WUBlastX LTR_Gypsy 152640 153419 230 - . . scaffold423 GLEAN mRNA 2456 3947 0.999855 - . ID=CGI_10000309; scaffold423 GLEAN promoter 3948 4003 0.999855 - . ID=CGI_10000309; scaffold42302 GLEAN mRNA 2785 10055 0.995875 - . ID=CGI_10006564; scaffold42302 GLEAN promoter 10056 11055 0.995875 - . ID=CGI_10006564; scaffold42302 TRF Tandem_Repeat 11097 11158 124 + . . scaffold42302 GLEAN mRNA 11332 21905 1 - . ID=CGI_10006565; scaffold42302 TRF Tandem_Repeat 18884 18918 52 + . . scaffold42302 GLEAN promoter 21906 22905 1 - . ID=CGI_10006565; scaffold42302 GLEAN mRNA 25277 30580 0.581351 - . ID=CGI_10006566; scaffold42302 GLEAN promoter 30581 31580 0.581351 - . ID=CGI_10006566; scaffold42302 GLEAN mRNA 34141 39767 0.985331 - . ID=CGI_10006567; scaffold42302 TRF Tandem_Repeat 39094 39138 72 + . . scaffold42302 GLEAN promoter 39768 40767 0.985331 - . ID=CGI_10006567; scaffold42302 WUBlastX DNA_PiggyBac 39965 40162 26 - . . scaffold42302 GLEAN mRNA 42006 46479 0.986322 - . ID=CGI_10006568; scaffold42302 WUBlastX DNA_PiggyBac 42078 42248 36 - . . scaffold42302 GLEAN promoter 46480 47479 0.986322 - . ID=CGI_10006568; scaffold42302 GLEAN promoter 50457 51456 0.692348 + . ID=CGI_10006569; scaffold42302 GLEAN mRNA 51457 66088 0.692348 + . ID=CGI_10006569; scaffold42302 TRF Tandem_Repeat 69229 69302 96 + . . scaffold42302 GLEAN promoter 73215 74214 0.59335 + . ID=CGI_10006570; scaffold42302 GLEAN mRNA 74215 90255 0.59335 + . ID=CGI_10006570; scaffold42302 TRF Tandem_Repeat 74754 74789 72 + . . scaffold42302 GLEAN mRNA 93887 98149 1 - . ID=CGI_10006571; scaffold42302 GLEAN promoter 97763 98762 1 + . ID=CGI_10006572; scaffold42302 GLEAN promoter 98150 99149 1 - . ID=CGI_10006571; scaffold42302 GLEAN mRNA 98763 103835 1 + . ID=CGI_10006572; scaffold42302 TRF Tandem_Repeat 109854 109902 98 + . . scaffold42302 WUBlastX DNA_hAT-Tip100 120901 121128 61 + . . scaffold42302 WUBlastX DNA_hAT-Tip100 120976 121128 84 + . . scaffold42302 GLEAN promoter 122214 123213 0.69447 + . ID=CGI_10006573; scaffold42302 TRF Tandem_Repeat 122798 122835 76 + . . scaffold42302 GLEAN mRNA 123214 124233 0.69447 + . ID=CGI_10006573; scaffold42302 GLEAN mRNA 130080 131009 1 - . ID=CGI_10006574; scaffold42302 GLEAN promoter 131010 132009 1 - . ID=CGI_10006574; scaffold42302 TRF Tandem_Repeat 138095 138459 570 + . . scaffold42302 TRF Tandem_Repeat 138127 138284 72 + . . scaffold42302 GLEAN mRNA 139205 148407 0.999952 - . ID=CGI_10006575; scaffold42302 TRF Tandem_Repeat 147949 148295 369 + . . scaffold42302 GLEAN promoter 148408 149407 0.999952 - . ID=CGI_10006575; scaffold42306 TRF Tandem_Repeat 37444 37468 50 + . . scaffold42306 WUBlastX LINE_RTE-X 39601 40323 496 - . . scaffold42306 WUBlastX LINE_CR1 39604 40455 201 - . . scaffold42306 WUBlastX LINE_R2 40975 41034 24 - . . scaffold42306 TRF Tandem_Repeat 47293 47350 98 + . . scaffold42306 TRF Tandem_Repeat 48384 48417 68 + . . scaffold42306 TRF Tandem_Repeat 56663 56707 72 + . . scaffold42306 GLEAN promoter 56730 57729 0.997439 + . ID=CGI_10006607; scaffold42306 GLEAN mRNA 57730 73063 0.997439 + . ID=CGI_10006607; scaffold42306 TRF Tandem_Repeat 59202 59619 487 + . . scaffold42306 GLEAN mRNA 67857 68111 0.999372 - . ID=CGI_10006608; scaffold42306 GLEAN promoter 68112 69111 0.999372 - . ID=CGI_10006608; scaffold42306 TRF Tandem_Repeat 71329 71793 750 + . . scaffold42306 GLEAN mRNA 80352 85387 1 - . ID=CGI_10006609; scaffold42306 GLEAN promoter 85388 86387 1 - . ID=CGI_10006609; scaffold42306 TRF Tandem_Repeat 87102 87484 384 + . . scaffold42306 GLEAN mRNA 91435 106726 0.999676 - . ID=CGI_10006610; scaffold42306 TRF Tandem_Repeat 92239 92350 116 + . . scaffold42306 TRF Tandem_Repeat 92243 92350 94 + . . scaffold42306 TRF Tandem_Repeat 93827 94085 421 + . . scaffold42306 TRF Tandem_Repeat 101357 101432 116 + . . scaffold42306 TRF Tandem_Repeat 101782 102182 721 + . . scaffold42306 GLEAN promoter 106727 107726 0.999676 - . ID=CGI_10006610; scaffold42306 GLEAN promoter 114556 115555 0.855145 + . ID=CGI_10006611; scaffold42306 GLEAN mRNA 115556 155578 0.855145 + . ID=CGI_10006611; scaffold42306 WUBlastX LTR_DIRS 123483 123761 52 - . . scaffold42306 WUBlastX LTR_DIRS 123483 123716 69 - . . scaffold42306 TRF Tandem_Repeat 124428 124484 114 + . . scaffold42306 TRF Tandem_Repeat 137611 137641 62 + . . scaffold42306 TRF Tandem_Repeat 146298 146338 55 + . . scaffold42306 WUBlastX LINE_L2 156317 156559 79 - . . scaffold42326 WUBlastX DNA_TcMar-Fot1 10372 11622 717 + . . scaffold42326 WUBlastX LINE_Jockey 36476 37141 37 + . . scaffold42326 WUBlastX LINE_I 36701 37357 38 + . . scaffold42326 GLEAN mRNA 41490 52581 0.544675 - . ID=CGI_10006691; scaffold42326 GLEAN promoter 52582 53581 0.544675 - . ID=CGI_10006691; scaffold42326 TRF Tandem_Repeat 63606 63847 317 + . . scaffold42326 GLEAN promoter 65289 66288 1 + . ID=CGI_10006692; scaffold42326 GLEAN mRNA 66289 74276 1 + . ID=CGI_10006692; scaffold42326 WUBlastX LINE_RTE-BovB 72088 72285 106 - . . scaffold42326 GLEAN promoter 74318 75317 0.615405 + . ID=CGI_10006694; scaffold42326 GLEAN mRNA 74826 90726 0.544838 - . ID=CGI_10006693; scaffold42326 GLEAN mRNA 75318 88313 0.615405 + . ID=CGI_10006694; scaffold42326 TRF Tandem_Repeat 88790 88824 70 + . . scaffold42326 TRF Tandem_Repeat 88822 88893 144 + . . scaffold42326 GLEAN promoter 90727 91726 0.544838 - . ID=CGI_10006693; scaffold42326 TRF Tandem_Repeat 91892 91947 58 + . . scaffold42326 TRF Tandem_Repeat 92383 92459 109 + . . scaffold42326 GLEAN mRNA 92595 94497 0.734569 - . ID=CGI_10006695; scaffold42326 GLEAN promoter 94498 95497 0.734569 - . ID=CGI_10006695; scaffold42326 TRF Tandem_Repeat 96315 96375 86 + . . scaffold42326 GLEAN promoter 102899 103898 0.749266 + . ID=CGI_10006696; scaffold42326 GLEAN mRNA 103899 104144 0.749266 + . ID=CGI_10006696; scaffold42326 GLEAN promoter 104949 105948 0.999999 + . ID=CGI_10006697; scaffold42326 TRF Tandem_Repeat 105438 105495 98 + . . scaffold42326 TRF Tandem_Repeat 105630 105668 78 + . . scaffold42326 GLEAN mRNA 105949 114174 0.999999 + . ID=CGI_10006697; scaffold42326 GLEAN mRNA 118399 154714 0.498922 - . ID=CGI_10006698; scaffold42326 TRF Tandem_Repeat 127936 127979 88 + . . scaffold42326 TRF Tandem_Repeat 139428 139454 54 + . . scaffold42326 GLEAN promoter 154715 155714 0.498922 - . ID=CGI_10006698; scaffold42326 TRF Tandem_Repeat 158987 159032 74 + . . scaffold42328 GLEAN mRNA 291 5872 0.843872 - . ID=CGI_10006547; scaffold42328 TRF Tandem_Repeat 4007 5455 2109 + . . scaffold42328 GLEAN promoter 5873 6872 0.843872 - . ID=CGI_10006547; scaffold42328 TRF Tandem_Repeat 16006 16066 122 + . . scaffold42328 GLEAN mRNA 16678 19207 1 - . ID=CGI_10006548; scaffold42328 GLEAN promoter 19208 20207 1 - . ID=CGI_10006548; scaffold42328 TRF Tandem_Repeat 27658 27683 52 + . . scaffold42328 WUBlastX LINE_RTE-BovB 27686 28540 325 - . . scaffold42328 WUBlastX LINE_RTE-BovB 27686 28276 440 - . . scaffold42328 GLEAN promoter 28569 29568 0.777732 + . ID=CGI_10006549; scaffold42328 GLEAN mRNA 29569 31949 0.777732 + . ID=CGI_10006549; scaffold42328 WUBlastX LINE_RTE-X 30699 30887 82 - . . scaffold42328 WUBlastX LINE_RTE-X 30735 30935 43 - . . scaffold42328 WUBlastX LINE_RTE-X 30738 30893 98 - . . scaffold42328 TRF Tandem_Repeat 33686 33765 65 + . . scaffold42328 GLEAN promoter 37459 38458 0.760925 + . ID=CGI_10006550; scaffold42328 TRF Tandem_Repeat 37982 38023 84 + . . scaffold42328 GLEAN mRNA 38459 41198 0.760925 + . ID=CGI_10006550; scaffold42328 GLEAN mRNA 41739 51046 0.378009 - . ID=CGI_10006551; scaffold42328 TRF Tandem_Repeat 47530 47581 52 + . . scaffold42328 TRF Tandem_Repeat 47818 47890 146 + . . scaffold42328 GLEAN promoter 51047 52046 0.378009 - . ID=CGI_10006551; scaffold42328 TRF Tandem_Repeat 51099 51167 129 + . . scaffold42328 GLEAN promoter 52336 53335 0.999994 + . ID=CGI_10006552; scaffold42328 GLEAN mRNA 53336 56572 0.999994 + . ID=CGI_10006552; scaffold42328 GLEAN promoter 58709 59708 0.999221 + . ID=CGI_10006553; scaffold42328 GLEAN mRNA 59709 74164 0.999221 + . ID=CGI_10006553; scaffold42328 TRF Tandem_Repeat 60134 60213 151 + . . scaffold42328 TRF Tandem_Repeat 61534 61576 50 + . . scaffold42328 TRF Tandem_Repeat 61534 61576 59 + . . scaffold42328 GLEAN promoter 75482 76481 0.999612 + . ID=CGI_10006554; scaffold42328 GLEAN mRNA 76482 81194 0.999612 + . ID=CGI_10006554; scaffold42328 WUBlastX LINE_RTE-X 78855 79613 141 - . . scaffold42328 GLEAN promoter 82542 83541 0.997014 + . ID=CGI_10006555; scaffold42328 GLEAN mRNA 83542 103804 0.997014 + . ID=CGI_10006555; scaffold42328 TRF Tandem_Repeat 90697 91155 756 + . . scaffold42328 TRF Tandem_Repeat 92644 93691 1271 + . . scaffold42328 TRF Tandem_Repeat 92644 93521 1035 + . . scaffold42328 TRF Tandem_Repeat 92644 93694 879 + . . scaffold42328 TRF Tandem_Repeat 93647 93706 61 + . . scaffold42328 TRF Tandem_Repeat 100382 100543 261 + . . scaffold42328 TRF Tandem_Repeat 103877 103913 74 + . . scaffold42328 GLEAN mRNA 109887 131055 0.988829 - . ID=CGI_10006556; scaffold42328 TRF Tandem_Repeat 114055 114254 343 + . . scaffold42328 TRF Tandem_Repeat 117143 118393 871 + . . scaffold42328 TRF Tandem_Repeat 117143 118393 999 + . . scaffold42328 TRF Tandem_Repeat 117160 117681 486 + . . scaffold42328 TRF Tandem_Repeat 117643 118388 835 + . . scaffold42328 TRF Tandem_Repeat 120472 121005 753 + . . scaffold42328 TRF Tandem_Repeat 122821 122870 100 + . . scaffold42328 TRF Tandem_Repeat 129057 129145 79 + . . scaffold42328 GLEAN promoter 131056 132055 0.988829 - . ID=CGI_10006556; scaffold42328 GLEAN promoter 136031 137030 0.999195 + . ID=CGI_10006557; scaffold42328 GLEAN mRNA 137031 145662 0.999195 + . ID=CGI_10006557; scaffold42328 TRF Tandem_Repeat 138468 138634 228 + . . scaffold42328 TRF Tandem_Repeat 151350 151953 372 + . . scaffold42328 TRF Tandem_Repeat 151450 151953 241 + . . scaffold42348 WUBlastX DNA_TcMar-Fot1 3666 3881 31 - . . scaffold42348 WUBlastX DNA_TcMar-Fot1 4240 4491 102 - . . scaffold42348 GLEAN mRNA 11455 11820 1 - . ID=CGI_10006676; scaffold42348 GLEAN promoter 11821 12820 1 - . ID=CGI_10006676; scaffold42348 TRF Tandem_Repeat 19062 19105 88 + . . scaffold42348 TRF Tandem_Repeat 42154 42205 97 + . . scaffold42348 TRF Tandem_Repeat 42766 42816 63 + . . scaffold42348 GLEAN mRNA 44621 47683 0.482728 - . ID=CGI_10006677; scaffold42348 GLEAN promoter 46845 47844 0.96594 + . ID=CGI_10006678; scaffold42348 GLEAN promoter 47684 48683 0.482728 - . ID=CGI_10006677; scaffold42348 GLEAN mRNA 47845 51431 0.96594 + . ID=CGI_10006678; scaffold42348 WUBlastX LTR_Gypsy 48922 49119 28 - . . scaffold42348 TRF Tandem_Repeat 50442 50498 50 + . . scaffold42348 GLEAN promoter 53184 54183 0.776981 + . ID=CGI_10006679; scaffold42348 GLEAN mRNA 54184 57842 0.776981 + . ID=CGI_10006679; scaffold42348 GLEAN mRNA 58913 71178 1 - . ID=CGI_10006680; scaffold42348 TRF Tandem_Repeat 61908 61948 59 + . . scaffold42348 GLEAN promoter 71179 72178 1 - . ID=CGI_10006680; scaffold42348 GLEAN mRNA 75283 78440 0.997064 - . ID=CGI_10006681; scaffold42348 GLEAN promoter 78441 79440 0.997064 - . ID=CGI_10006681; scaffold42348 TRF Tandem_Repeat 78776 78806 62 + . . scaffold42348 GLEAN promoter 80447 81446 0.997293 + . ID=CGI_10006682; scaffold42348 GLEAN mRNA 81447 92226 0.997293 + . ID=CGI_10006682; scaffold42348 TRF Tandem_Repeat 82277 82350 116 + . . scaffold42348 TRF Tandem_Repeat 86619 86652 52 + . . scaffold42348 TRF Tandem_Repeat 92320 92356 74 + . . scaffold42348 GLEAN mRNA 96568 107151 0.643244 - . ID=CGI_10006683; scaffold42348 TRF Tandem_Repeat 97789 97855 80 + . . scaffold42348 TRF Tandem_Repeat 100244 100292 98 + . . scaffold42348 TRF Tandem_Repeat 100480 100512 66 + . . scaffold42348 TRF Tandem_Repeat 100510 100543 68 + . . scaffold42348 TRF Tandem_Repeat 101038 101104 89 + . . scaffold42348 WUBlastX LINE_RTE-X 101194 101268 27 - . . scaffold42348 WUBlastX LINE_RTE-X 101640 101801 70 - . . scaffold42348 WUBlastX LINE_RTE-X 101741 102616 224 - . . scaffold42348 WUBlastX LINE_RTE-X 101837 102529 305 - . . scaffold42348 WUBlastX LINE_RTE-X 101933 102739 84 - . . scaffold42348 TRF Tandem_Repeat 106886 106928 86 + . . scaffold42348 GLEAN promoter 107152 108151 0.643244 - . ID=CGI_10006683; scaffold42348 GLEAN mRNA 120721 125013 1 - . ID=CGI_10006684; scaffold42348 GLEAN promoter 124349 125348 0.804443 + . ID=CGI_10006685; scaffold42348 GLEAN promoter 125014 126013 1 - . ID=CGI_10006684; scaffold42348 GLEAN mRNA 125349 134228 0.804443 + . ID=CGI_10006685; scaffold42348 TRF Tandem_Repeat 134669 134720 59 + . . scaffold42348 GLEAN mRNA 144354 156217 0.998987 - . ID=CGI_10006686; scaffold42348 TRF Tandem_Repeat 145193 145292 173 + . . scaffold42348 TRF Tandem_Repeat 146895 146933 78 + . . scaffold42348 TRF Tandem_Repeat 147382 147495 201 + . . scaffold42348 TRF Tandem_Repeat 148266 148294 58 + . . scaffold42348 TRF Tandem_Repeat 151280 151309 60 + . . scaffold42348 GLEAN promoter 156218 157217 0.998987 - . ID=CGI_10006686; scaffold42348 TRF Tandem_Repeat 156651 156678 56 + . . scaffold42364 GLEAN mRNA 5952 23975 0.523615 - . ID=CGI_10006717; scaffold42364 WUBlastX DNA_TcMar-Tc1 22971 23945 432 - . . scaffold42364 GLEAN promoter 23976 24975 0.523615 - . ID=CGI_10006717; scaffold42364 GLEAN mRNA 29845 34319 0.999376 - . ID=CGI_10006718; scaffold42364 GLEAN promoter 34320 35319 0.999376 - . ID=CGI_10006718; scaffold42364 GLEAN promoter 36898 37897 0.997778 + . ID=CGI_10006719; scaffold42364 GLEAN mRNA 37898 43719 0.997778 + . ID=CGI_10006719; scaffold42364 GLEAN promoter 43483 44482 0.997676 + . ID=CGI_10006720; scaffold42364 GLEAN mRNA 44483 45534 0.997676 + . ID=CGI_10006720; scaffold42364 TRF Tandem_Repeat 45706 45753 96 + . . scaffold42364 GLEAN promoter 46762 47761 0.61511 + . ID=CGI_10006722; scaffold42364 GLEAN mRNA 47371 73499 0.650511 - . ID=CGI_10006721; scaffold42364 GLEAN mRNA 47762 56565 0.61511 + . ID=CGI_10006722; scaffold42364 TRF Tandem_Repeat 48243 48988 488 + . . scaffold42364 TRF Tandem_Repeat 55022 55176 118 + . . scaffold42364 TRF Tandem_Repeat 64773 64814 84 + . . scaffold42364 GLEAN promoter 71172 72171 0.999923 + . ID=CGI_10006723; scaffold42364 TRF Tandem_Repeat 71835 71873 78 + . . scaffold42364 TRF Tandem_Repeat 72030 72085 112 + . . scaffold42364 GLEAN mRNA 72172 88504 0.999923 + . ID=CGI_10006723; scaffold42364 GLEAN promoter 73500 74499 0.650511 - . ID=CGI_10006721; scaffold42364 WUBlastX LINE_CR1-L2 73859 74110 36 - . . scaffold42364 WUBlastX LINE_L2 74166 74375 31 - . . scaffold42364 WUBlastX LINE_L2 74217 75479 188 - . . scaffold42364 WUBlastX LINE_CR1-L2 74590 76053 189 - . . scaffold42364 TRF Tandem_Repeat 74783 74808 52 + . . scaffold42364 WUBlastX LINE_L2 74842 76011 277 - . . scaffold42364 WUBlastX LINE_CR1-L2 76004 76306 85 - . . scaffold42364 WUBlastX LINE_L2 76007 76186 110 - . . scaffold42364 WUBlastX LINE_Rex-Babar 76010 76390 35 - . . scaffold42364 WUBlastX LINE_CR1-L2 76019 76240 106 - . . scaffold42364 TRF Tandem_Repeat 78047 78082 72 + . . scaffold42364 TRF Tandem_Repeat 85787 85823 74 + . . scaffold42364 TRF Tandem_Repeat 87164 87188 50 + . . scaffold42364 TRF Tandem_Repeat 87258 87298 82 + . . scaffold42364 GLEAN mRNA 90428 92125 1 - . ID=CGI_10006724; scaffold42364 GLEAN promoter 92126 93125 1 - . ID=CGI_10006724; scaffold42364 GLEAN mRNA 95609 99366 0.999675 - . ID=CGI_10006725; scaffold42364 GLEAN promoter 99367 100366 0.999675 - . ID=CGI_10006725; scaffold42364 GLEAN mRNA 102322 103314 0.64854 - . ID=CGI_10006726; scaffold42364 GLEAN promoter 103315 104314 0.64854 - . ID=CGI_10006726; scaffold42364 TRF Tandem_Repeat 104202 104235 50 + . . scaffold42364 WUBlastX LINE_L1-Tx1 105111 106688 42 - . . scaffold42364 WUBlastX LINE_L1 105994 106233 97 - . . scaffold42364 WUBlastX LINE_L1 106200 106694 132 - . . scaffold42364 WUBlastX LINE_L1 106296 106685 163 - . . scaffold42364 TRF Tandem_Repeat 106738 106787 57 + . . scaffold42364 TRF Tandem_Repeat 106957 108198 1660 + . . scaffold42364 TRF Tandem_Repeat 123045 123077 50 + . . scaffold42364 GLEAN promoter 123273 124272 0.999675 + . ID=CGI_10006727; scaffold42364 GLEAN mRNA 124273 129968 0.999675 + . ID=CGI_10006727; scaffold42364 TRF Tandem_Repeat 124459 124494 63 + . . scaffold42364 GLEAN mRNA 133691 151228 0.841136 - . ID=CGI_10006728; scaffold42364 TRF Tandem_Repeat 134203 134617 568 + . . scaffold42364 TRF Tandem_Repeat 141456 142567 1763 + . . scaffold42364 TRF Tandem_Repeat 145231 145290 52 + . . scaffold42364 GLEAN promoter 151229 152228 0.841136 - . ID=CGI_10006728; scaffold42364 TRF Tandem_Repeat 151391 151457 57 + . . scaffold42364 TRF Tandem_Repeat 151397 151446 64 + . . scaffold42364 TRF Tandem_Repeat 152665 152711 94 + . . scaffold42364 TRF Tandem_Repeat 157982 158019 76 + . . scaffold42366 TRF Tandem_Repeat 1 27 54 + . . scaffold42366 GLEAN promoter 23937 24936 0.245386 + . ID=CGI_10006699; scaffold42366 TRF Tandem_Repeat 24462 24502 82 + . . scaffold42366 GLEAN mRNA 24937 76161 0.245386 + . ID=CGI_10006699; scaffold42366 TRF Tandem_Repeat 34084 34134 93 + . . scaffold42366 TRF Tandem_Repeat 34535 34577 86 + . . scaffold42366 WUBlastX LINE_L1-Tx1 36496 36741 34 - . . scaffold42366 WUBlastX LINE_L1-Tx1 36538 36741 47 - . . scaffold42366 TRF Tandem_Repeat 50024 50094 142 + . . scaffold42366 GLEAN mRNA 59850 61779 1 - . ID=CGI_10006700; scaffold42366 GLEAN promoter 61780 62779 1 - . ID=CGI_10006700; scaffold42366 TRF Tandem_Repeat 67468 67755 495 + . . scaffold42366 WUBlastX DNA_hAT 71295 71453 88 + . . scaffold42366 WUBlastX DNA_hAT 72798 73394 394 + . . scaffold42366 WUBlastX DNA_hAT 74654 74950 144 + . . scaffold42366 WUBlastX DNA_hAT 75580 75822 45 + . . scaffold42366 WUBlastX DNA_hAT 75976 76083 25 + . . scaffold42366 TRF Tandem_Repeat 81999 82047 98 + . . scaffold42366 TRF Tandem_Repeat 82076 82111 63 + . . scaffold42366 GLEAN promoter 83792 84791 0.807514 + . ID=CGI_10006701; scaffold42366 GLEAN mRNA 84792 96687 0.807514 + . ID=CGI_10006701; scaffold42366 TRF Tandem_Repeat 93714 93817 163 + . . scaffold42366 GLEAN promoter 99436 100435 0.999271 + . ID=CGI_10006702; scaffold42366 TRF Tandem_Repeat 99672 99729 75 + . . scaffold42366 GLEAN mRNA 100436 111648 0.999271 + . ID=CGI_10006702; scaffold42366 TRF Tandem_Repeat 106157 106205 98 + . . scaffold42366 TRF Tandem_Repeat 110514 110539 52 + . . scaffold42366 TRF Tandem_Repeat 112379 112508 61 + . . scaffold42366 GLEAN mRNA 116419 123857 1 - . ID=CGI_10006703; scaffold42366 GLEAN promoter 123256 124255 0.998845 + . ID=CGI_10006704; scaffold42366 GLEAN promoter 123858 124857 1 - . ID=CGI_10006703; scaffold42366 GLEAN mRNA 124256 157051 0.998845 + . ID=CGI_10006704; scaffold42366 TRF Tandem_Repeat 131892 131935 88 + . . scaffold42366 TRF Tandem_Repeat 155359 155414 58 + . . scaffold42366 TRF Tandem_Repeat 155359 155411 88 + . . scaffold42366 TRF Tandem_Repeat 155365 155414 73 + . . scaffold42372 TRF Tandem_Repeat 8055 8099 90 + . . scaffold42372 GLEAN promoter 20604 21603 0.732944 + . ID=CGI_10006544; scaffold42372 GLEAN mRNA 21604 21987 0.732944 + . ID=CGI_10006544; scaffold42372 WUBlastX LTR_Gypsy 26998 28365 98 + . . scaffold42372 WUBlastX LTR_Gypsy 27328 29700 465 + . . scaffold42372 WUBlastX LTR_Gypsy 27982 30000 997 + . . scaffold42372 WUBlastX LTR_Gypsy 29906 30409 222 + . . scaffold42372 WUBlastX LTR_Gypsy 30364 30423 25 + . . scaffold42372 WUBlastX LTR_Gypsy 30471 32048 341 + . . scaffold42372 WUBlastX LTR_Gypsy 30483 31790 584 + . . scaffold42372 WUBlastX LTR_Gypsy? 33898 35049 48 + . . scaffold42372 TRF Tandem_Repeat 47880 47920 82 + . . scaffold42372 WUBlastX DNA_IS4EU 61374 61748 51 + . . scaffold42372 WUBlastX DNA_IS4EU 61814 62377 345 + . . scaffold42372 WUBlastX DNA_TcMar-Tc1 72398 72751 40 - . . scaffold42372 WUBlastX DNA_TcMar-Tc1 72513 73352 87 - . . scaffold42372 TRF Tandem_Repeat 77211 77245 70 + . . scaffold42372 TRF Tandem_Repeat 79175 79265 110 + . . scaffold42372 WUBlastX LTR_Gypsy 80218 80451 45 + . . scaffold42372 WUBlastX LTR_Gypsy 80289 80993 229 + . . scaffold42372 WUBlastX LTR_Gypsy 80448 81071 280 + . . scaffold42372 WUBlastX LTR_Gypsy 81000 81119 63 + . . scaffold42372 WUBlastX LTR_Gypsy 81116 81445 138 + . . scaffold42372 WUBlastX LTR_Gypsy 81943 82041 27 + . . scaffold42372 WUBlastX LTR_Gypsy 82245 82439 28 + . . scaffold42372 TRF Tandem_Repeat 82494 82543 54 + . . scaffold42372 WUBlastX DNA_MuDR 86092 86331 41 + . . scaffold42372 WUBlastX DNA_MuDR 86104 86388 35 + . . scaffold42372 WUBlastX DNA_MuDR 86424 86912 92 + . . scaffold42372 WUBlastX DNA_MuDR 86472 87032 91 + . . scaffold42372 WUBlastX DNA_MuDR 86535 86894 159 + . . scaffold42372 TRF Tandem_Repeat 108026 108051 52 + . . scaffold42372 TRF Tandem_Repeat 117218 117256 78 + . . scaffold42372 WUBlastX DNA_TcMar-Tc1 120882 121508 136 + . . scaffold42372 WUBlastX DNA_TcMar-Tc1 121104 121508 174 + . . scaffold42372 WUBlastX DNA_TcMar-Tc1 121513 121863 212 + . . scaffold42372 TRF Tandem_Repeat 137102 137141 80 + . . scaffold42372 GLEAN promoter 143958 144957 0.728721 + . ID=CGI_10006546; scaffold42372 GLEAN mRNA 144958 154366 0.728721 + . ID=CGI_10006546; scaffold42372 TRF Tandem_Repeat 145779 145828 100 + . . scaffold42380 GLEAN promoter 1179 2178 0.346437 + . ID=CGI_10006729; scaffold42380 GLEAN mRNA 2179 39282 0.346437 + . ID=CGI_10006729; scaffold42380 TRF Tandem_Repeat 3838 3904 89 + . . scaffold42380 TRF Tandem_Repeat 4368 4403 63 + . . scaffold42380 TRF Tandem_Repeat 4401 4429 58 + . . scaffold42380 TRF Tandem_Repeat 6899 6951 79 + . . scaffold42380 TRF Tandem_Repeat 24819 24864 92 + . . scaffold42380 TRF Tandem_Repeat 24868 24918 68 + . . scaffold42380 TRF Tandem_Repeat 27683 27921 289 + . . scaffold42380 TRF Tandem_Repeat 27683 27921 289 + . . scaffold42380 TRF Tandem_Repeat 28567 28765 238 + . . scaffold42380 TRF Tandem_Repeat 29442 29567 171 + . . scaffold42380 TRF Tandem_Repeat 29450 29551 127 + . . scaffold42380 TRF Tandem_Repeat 32279 32322 79 + . . scaffold42380 GLEAN mRNA 49775 51567 0.728225 - . ID=CGI_10006730; scaffold42380 GLEAN promoter 51568 52567 0.728225 - . ID=CGI_10006730; scaffold42380 TRF Tandem_Repeat 59038 59072 70 + . . scaffold42380 TRF Tandem_Repeat 77490 77546 114 + . . scaffold42380 TRF Tandem_Repeat 77546 77571 52 + . . scaffold42380 TRF Tandem_Repeat 79021 79063 86 + . . scaffold42380 GLEAN promoter 81419 82418 1 + . ID=CGI_10006731; scaffold42380 GLEAN mRNA 82419 110422 1 + . ID=CGI_10006731; scaffold42380 TRF Tandem_Repeat 83871 83924 90 + . . scaffold42380 TRF Tandem_Repeat 86051 86094 88 + . . scaffold42380 TRF Tandem_Repeat 89006 89049 88 + . . scaffold42380 WUBlastX LINE_RTE-X 92802 93017 53 - . . scaffold42380 TRF Tandem_Repeat 96160 96234 127 + . . scaffold42380 TRF Tandem_Repeat 106800 106853 108 + . . scaffold42380 GLEAN mRNA 113360 114319 1 - . ID=CGI_10006732; scaffold42380 GLEAN promoter 114320 115319 1 - . ID=CGI_10006732; scaffold42380 TRF Tandem_Repeat 123635 123691 55 + . . scaffold42380 TRF Tandem_Repeat 123739 123774 72 + . . scaffold42380 GLEAN mRNA 127368 140360 0.906077 - . ID=CGI_10006733; scaffold42380 TRF Tandem_Repeat 129068 129512 505 + . . scaffold42380 GLEAN promoter 140361 141360 0.906077 - . ID=CGI_10006733; scaffold42380 GLEAN mRNA 149257 149559 0.905511 - . ID=CGI_10006734; scaffold42380 GLEAN promoter 149560 150559 0.905511 - . ID=CGI_10006734; scaffold42380 GLEAN promoter 150395 151394 1 + . ID=CGI_10006735; scaffold42380 GLEAN mRNA 151395 157460 1 + . ID=CGI_10006735; scaffold42380 TRF Tandem_Repeat 159073 159146 105 + . . scaffold42390 TRF Tandem_Repeat 1 29 58 + . . scaffold42390 TRF Tandem_Repeat 430 522 127 + . . scaffold42390 TRF Tandem_Repeat 430 533 115 + . . scaffold42390 TRF Tandem_Repeat 1376 1671 242 + . . scaffold42390 TRF Tandem_Repeat 1383 1671 273 + . . scaffold42390 GLEAN mRNA 7677 11199 0.836238 - . ID=CGI_10006753; scaffold42390 TRF Tandem_Repeat 9196 9236 82 + . . scaffold42390 GLEAN promoter 11200 12199 0.836238 - . ID=CGI_10006753; scaffold42390 GLEAN mRNA 13650 15311 1 - . ID=CGI_10006754; scaffold42390 GLEAN promoter 15312 16311 1 - . ID=CGI_10006754; scaffold42390 GLEAN promoter 19030 20029 0.999787 + . ID=CGI_10006755; scaffold42390 GLEAN mRNA 20030 20575 0.999787 + . ID=CGI_10006755; scaffold42390 TRF Tandem_Repeat 24283 24334 52 + . . scaffold42390 TRF Tandem_Repeat 63863 63898 72 + . . scaffold42390 TRF Tandem_Repeat 63898 63925 56 + . . scaffold42390 TRF Tandem_Repeat 80852 80890 78 + . . scaffold42390 WUBlastX LTR_Gypsy 82928 83086 84 + . . scaffold42390 WUBlastX LTR_Gypsy 83053 83385 178 + . . scaffold42390 WUBlastX LTR_Gypsy 83101 83523 92 + . . scaffold42390 WUBlastX LTR_Gypsy 83116 83388 200 + . . scaffold42390 WUBlastX LTR_Gypsy 83125 83664 38 + . . scaffold42390 WUBlastX LTR_Gypsy 84473 84769 54 + . . scaffold42390 WUBlastX LTR_Gypsy 84720 84842 39 + . . scaffold42390 WUBlastX LTR_Gypsy 85152 85253 21 + . . scaffold42390 WUBlastX LTR_Gypsy 85227 85283 28 + . . scaffold42390 WUBlastX LTR_Gypsy 85581 85814 46 + . . scaffold42390 WUBlastX LTR_Gypsy 85680 85841 70 + . . scaffold42390 WUBlastX LTR_Gypsy 85807 86151 313 + . . scaffold42390 WUBlastX LTR_Gypsy 86135 86569 296 + . . scaffold42390 WUBlastX LTR_Gypsy 86159 86647 189 + . . scaffold42390 WUBlastX LTR_Gypsy 86234 86794 87 + . . scaffold42390 WUBlastX LTR_Gypsy 87089 87190 25 + . . scaffold42390 WUBlastX LTR_Gypsy 87178 87468 175 + . . scaffold42390 WUBlastX LTR_Gypsy 87255 88217 233 + . . scaffold42390 WUBlastX LTR_Gypsy 87480 88175 378 + . . scaffold42390 WUBlastX LTR_Gypsy 88191 88274 20 + . . scaffold42390 WUBlastX LTR_Gypsy 88191 88247 44 + . . scaffold42390 TRF Tandem_Repeat 89202 89236 70 + . . scaffold42390 TRF Tandem_Repeat 96050 96093 88 + . . scaffold42390 TRF Tandem_Repeat 97068 97113 92 + . . scaffold42390 WUBlastX DNA_TcMar-Marin 98287 98475 45 + . . scaffold42390 WUBlastX DNA_TcMar-Marin 98441 98707 28 + . . scaffold42390 WUBlastX LINE_L2 112016 112348 38 - . . scaffold42390 WUBlastX LINE_CR1-L2 112085 112327 41 - . . scaffold42390 WUBlastX LINE_CR1-L2 112148 112327 44 - . . scaffold42390 GLEAN promoter 112401 113400 0.997979 + . ID=CGI_10006756; scaffold42390 GLEAN mRNA 113401 113928 0.997979 + . ID=CGI_10006756; scaffold42390 WUBlastX LINE_L1-Tx1 114894 115082 81 + . . scaffold42390 WUBlastX LINE_L1-Tx1 114921 115193 55 + . . scaffold42390 WUBlastX LINE_L1-Tx1 114924 115082 119 + . . scaffold42390 WUBlastX LINE_L1-Tx1 114924 115148 90 + . . scaffold42390 WUBlastX LINE_L1-Tx1 115235 115393 81 + . . scaffold42390 WUBlastX LINE_L1-Tx1 115286 115477 52 + . . scaffold42390 WUBlastX LINE_L1 115423 115497 27 + . . scaffold42390 WUBlastX LINE_L1-Tx1 121273 121491 45 + . . scaffold42390 TRF Tandem_Repeat 122506 122556 102 + . . scaffold42390 TRF Tandem_Repeat 129283 129338 112 + . . scaffold42390 TRF Tandem_Repeat 131699 131776 156 + . . scaffold42390 TRF Tandem_Repeat 131774 131808 70 + . . scaffold42390 TRF Tandem_Repeat 133482 133516 70 + . . scaffold42390 TRF Tandem_Repeat 140057 140095 78 + . . scaffold42390 GLEAN promoter 144201 145200 0.970587 + . ID=CGI_10006757; scaffold42390 GLEAN mRNA 145201 145437 0.970587 + . ID=CGI_10006757; scaffold42390 TRF Tandem_Repeat 150232 150681 552 + . . scaffold42390 TRF Tandem_Repeat 156061 156100 53 + . . scaffold42390 GLEAN promoter 158179 159178 0.999993 + . ID=CGI_10006758; scaffold42390 GLEAN mRNA 159179 159421 0.999993 + . ID=CGI_10006758; scaffold42392 TRF Tandem_Repeat 36459 36489 53 + . . scaffold42392 GLEAN mRNA 39303 40445 0.988982 - . ID=CGI_10006781; scaffold42392 GLEAN promoter 40446 41445 0.988982 - . ID=CGI_10006781; scaffold42392 TRF Tandem_Repeat 46830 46869 80 + . . scaffold42392 GLEAN mRNA 75613 82644 0.648545 - . ID=CGI_10006782; scaffold42392 TRF Tandem_Repeat 77852 77907 112 + . . scaffold42392 GLEAN promoter 82645 83644 0.648545 - . ID=CGI_10006782; scaffold42392 GLEAN promoter 86965 87964 1 + . ID=CGI_10006783; scaffold42392 TRF Tandem_Repeat 87065 87107 86 + . . scaffold42392 TRF Tandem_Repeat 87175 87229 110 + . . scaffold42392 GLEAN mRNA 87965 91351 1 + . ID=CGI_10006783; scaffold42392 GLEAN promoter 90743 91742 0.999674 + . ID=CGI_10006784; scaffold42392 GLEAN mRNA 91743 99308 0.999674 + . ID=CGI_10006784; scaffold42392 TRF Tandem_Repeat 93184 93236 97 + . . scaffold42392 TRF Tandem_Repeat 94061 94104 88 + . . scaffold42392 GLEAN promoter 98459 99458 0.476918 + . ID=CGI_10006785; scaffold42392 GLEAN mRNA 99459 124879 0.476918 + . ID=CGI_10006785; scaffold42392 TRF Tandem_Repeat 109732 109804 68 + . . scaffold42392 TRF Tandem_Repeat 109734 109804 78 + . . scaffold42392 TRF Tandem_Repeat 114159 114221 90 + . . scaffold42392 WUBlastX LINE_CR1-L2 114330 114722 30 - . . scaffold42392 WUBlastX LINE_L2 114378 114668 35 - . . scaffold42392 WUBlastX LTR_Gypsy 134499 134624 28 + . . scaffold42392 WUBlastX LTR_Gypsy 134558 135220 111 + . . scaffold42392 WUBlastX LTR_Gypsy-Cigr 134558 135091 120 + . . scaffold42392 WUBlastX LTR_Copia 135002 135292 48 + . . scaffold42392 WUBlastX LTR_Gypsy 135286 135651 37 + . . scaffold42392 WUBlastX LTR_Gypsy-Cigr 135349 136809 655 + . . scaffold42392 WUBlastX LTR_Gypsy 136805 137428 342 + . . scaffold42392 WUBlastX LTR_Gypsy 136811 137326 440 + . . scaffold42392 WUBlastX LTR_Gypsy 141816 141872 20 - . . scaffold42392 WUBlastX LTR_Gypsy-Cigr 142235 143824 973 - . . scaffold42392 GLEAN promoter 145946 146945 0.782062 + . ID=CGI_10006786; scaffold42392 GLEAN mRNA 146946 151067 0.782062 + . ID=CGI_10006786; scaffold42392 WUBlastX LTR_Gypsy-Cigr 147507 148058 150 - . . scaffold42392 WUBlastX LTR_Gypsy 147606 148058 170 - . . scaffold42392 WUBlastX LTR_Gypsy-Cigr 148067 148840 292 - . . scaffold42392 WUBlastX LTR_Gypsy 148208 149065 23 - . . scaffold42392 TRF Tandem_Repeat 154730 154758 58 + . . scaffold42392 TRF Tandem_Repeat 155736 156012 227 + . . scaffold42392 TRF Tandem_Repeat 155777 156064 213 + . . scaffold42392 WUBlastX LINE_Proto2 157359 157511 33 + . . scaffold42392 WUBlastX LINE_Jockey 157392 157514 39 + . . scaffold42392 WUBlastX LINE_Jockey 157392 157541 25 + . . scaffold42392 WUBlastX LINE_Proto2 157775 158257 37 + . . scaffold42392 WUBlastX LINE_Proto2 158263 158511 42 + . . scaffold42392 WUBlastX LINE_Proto2 158302 158520 42 + . . scaffold42392 WUBlastX LINE_CR1 158531 158797 44 + . . scaffold42392 WUBlastX LINE_L2 158552 158728 45 + . . scaffold42392 WUBlastX LINE_L1 158606 158734 53 + . . scaffold42392 WUBlastX LINE_RTE-X 158806 159135 33 + . . scaffold42392 WUBlastX LINE_RTE-RTE 158812 158994 64 + . . scaffold42392 WUBlastX LINE_RTE-RTE 158848 159051 79 + . . scaffold42392 WUBlastX LINE_L2 158884 159090 41 + . . scaffold42392 WUBlastX LINE_RTE-X 159349 160113 151 + . . scaffold42392 WUBlastX LINE_CR1 160146 160472 76 + . . scaffold42392 WUBlastX LINE_L2-Hydra 160248 160532 61 + . . scaffold424 WUBlastX LINE_RTE-X 5590 5958 84 - . . scaffold424 WUBlastX LTR_Ngaro 6330 7319 397 - . . scaffold424 WUBlastX LTR_Ngaro 7244 8863 924 - . . scaffold424 WUBlastX LTR_Ngaro 8939 9643 155 - . . scaffold424 WUBlastX LTR_Ngaro 9098 9709 261 - . . scaffold424 TRF Tandem_Repeat 10528 10581 90 + . . scaffold424 TRF Tandem_Repeat 12481 12508 56 + . . scaffold424 GLEAN promoter 13301 14300 0.973506 + . ID=CGI_10014349; scaffold424 GLEAN mRNA 14301 24151 0.973506 + . ID=CGI_10014349; scaffold424 WUBlastX LINE_L1-Tx1 26970 27161 55 + . . scaffold424 GLEAN mRNA 29503 33061 0.999676 - . ID=CGI_10014350; scaffold424 GLEAN promoter 33062 34061 0.999676 - . ID=CGI_10014350; scaffold424 TRF Tandem_Repeat 38732 38776 90 + . . scaffold424 GLEAN promoter 42081 43080 0.600906 + . ID=CGI_10014351; scaffold424 GLEAN mRNA 43081 45090 0.600906 + . ID=CGI_10014351; scaffold424 GLEAN mRNA 46350 64570 0.999605 - . ID=CGI_10014352; scaffold424 TRF Tandem_Repeat 47470 48634 1596 + . . scaffold424 TRF Tandem_Repeat 53452 53487 54 + . . scaffold424 WUBlastX LTR_Gypsy 64445 64606 24 - . . scaffold424 GLEAN promoter 64571 65570 0.999605 - . ID=CGI_10014352; scaffold424 WUBlastX LTR_Gypsy 65069 65212 62 - . . scaffold424 WUBlastX LTR_Gypsy 65069 65290 40 - . . scaffold424 WUBlastX LTR_Gypsy 65317 65403 32 - . . scaffold424 WUBlastX LTR_Gypsy 65711 66133 28 - . . scaffold424 WUBlastX LTR_Gypsy 65828 66082 34 - . . scaffold424 WUBlastX LTR_Gypsy 65915 66175 34 - . . scaffold424 WUBlastX LTR_Gypsy 65921 66106 49 - . . scaffold424 WUBlastX LTR_Gypsy 66144 66383 52 - . . scaffold424 WUBlastX LTR_Gypsy 66180 66377 94 - . . scaffold424 WUBlastX LTR_Gypsy 66396 66485 69 - . . scaffold424 WUBlastX LTR_Gypsy 66473 66637 118 - . . scaffold424 WUBlastX LTR_Gypsy 66634 66819 66 - . . scaffold424 WUBlastX LTR_Gypsy 66670 66984 92 - . . scaffold424 WUBlastX LTR_Gypsy 69110 69370 66 - . . scaffold424 WUBlastX LTR_Gypsy 69979 70173 45 - . . scaffold424 TRF Tandem_Repeat 73630 75134 952 + . . scaffold424 TRF Tandem_Repeat 75468 75498 53 + . . scaffold424 TRF Tandem_Repeat 84351 84376 52 + . . scaffold424 GLEAN mRNA 91671 98594 0.990391 - . ID=CGI_10014353; scaffold424 WUBlastX DNA_hAT-Ac 94421 94936 52 + . . scaffold424 WUBlastX DNA_hAT-Ac 94424 94828 89 + . . scaffold424 WUBlastX DNA_hAT-Ac 94951 95172 20 + . . scaffold424 WUBlastX DNA_hAT-Ac 95119 95166 24 + . . scaffold424 WUBlastX DNA_hAT-Ac 95241 95372 35 + . . scaffold424 TRF Tandem_Repeat 98408 98461 63 + . . scaffold424 GLEAN promoter 98595 99594 0.990391 - . ID=CGI_10014353; scaffold424 TRF Tandem_Repeat 99432 100519 1315 + . . scaffold424 TRF Tandem_Repeat 100734 100765 55 + . . scaffold424 WUBlastX LTR_Gypsy 104390 104584 30 + . . scaffold424 WUBlastX LTR_Gypsy-Cigr 104583 104834 43 + . . scaffold424 WUBlastX LTR_Gypsy 104598 104924 37 + . . scaffold424 WUBlastX LTR_Gypsy-Cigr 105266 105625 65 + . . scaffold424 TRF Tandem_Repeat 117901 117927 54 + . . scaffold424 TRF Tandem_Repeat 118748 119876 1561 + . . scaffold424 TRF Tandem_Repeat 119900 119953 54 + . . scaffold424 TRF Tandem_Repeat 119907 119958 59 + . . scaffold424 TRF Tandem_Repeat 121928 121961 68 + . . scaffold424 GLEAN mRNA 124459 130627 0.999672 - . ID=CGI_10014354; scaffold424 WUBlastX DNA_Kolobok-Hyd 125057 125233 51 - . . scaffold424 WUBlastX DNA_Kolobok 125093 125746 51 - . . scaffold424 WUBlastX DNA_Kolobok-Hyd 125537 125878 69 - . . scaffold424 GLEAN promoter 129832 130831 0.634591 + . ID=CGI_10014355; scaffold424 GLEAN promoter 130628 131627 0.999672 - . ID=CGI_10014354; scaffold424 GLEAN mRNA 130832 134861 0.634591 + . ID=CGI_10014355; scaffold424 TRF Tandem_Repeat 141184 141833 815 + . . scaffold424 TRF Tandem_Repeat 142423 142599 214 + . . scaffold424 GLEAN promoter 143048 144047 0.796317 + . ID=CGI_10014356; scaffold424 GLEAN mRNA 144048 150075 0.796317 + . ID=CGI_10014356; scaffold424 TRF Tandem_Repeat 150241 150290 100 + . . scaffold424 TRF Tandem_Repeat 156926 156976 50 + . . scaffold424 TRF Tandem_Repeat 157357 157399 86 + . . scaffold424 GLEAN mRNA 157729 165596 0.996366 - . ID=CGI_10014357; scaffold424 GLEAN promoter 162824 163823 0.691951 + . ID=CGI_10014358; scaffold424 GLEAN mRNA 163824 169423 0.691951 + . ID=CGI_10014358; scaffold424 GLEAN promoter 165597 166596 0.996366 - . ID=CGI_10014357; scaffold424 TRF Tandem_Repeat 166197 166240 88 + . . scaffold424 TRF Tandem_Repeat 181077 181132 91 + . . scaffold424 TRF Tandem_Repeat 182698 182751 90 + . . scaffold424 TRF Tandem_Repeat 183909 183949 73 + . . scaffold424 GLEAN mRNA 184213 188430 1 - . ID=CGI_10014359; scaffold424 GLEAN promoter 188431 189430 1 - . ID=CGI_10014359; scaffold424 TRF Tandem_Repeat 193181 193419 338 + . . scaffold424 TRF Tandem_Repeat 200893 201245 358 + . . scaffold424 TRF Tandem_Repeat 202249 202945 831 + . . scaffold424 GLEAN mRNA 206378 209271 0.990151 - . ID=CGI_10014360; scaffold424 TRF Tandem_Repeat 208881 208949 93 + . . scaffold424 TRF Tandem_Repeat 208881 208949 84 + . . scaffold424 GLEAN promoter 209272 210271 0.990151 - . ID=CGI_10014360; scaffold424 TRF Tandem_Repeat 211248 211295 96 + . . scaffold424 TRF Tandem_Repeat 214227 214256 51 + . . scaffold424 TRF Tandem_Repeat 215046 215079 68 + . . scaffold424 TRF Tandem_Repeat 219155 219206 104 + . . scaffold424 TRF Tandem_Repeat 219318 219342 50 + . . scaffold424 GLEAN promoter 220018 221017 1 + . ID=CGI_10014361; scaffold424 GLEAN mRNA 221018 227453 1 + . ID=CGI_10014361; scaffold424 TRF Tandem_Repeat 222070 222113 52 + . . scaffold424 TRF Tandem_Repeat 222071 222132 62 + . . scaffold424 TRF Tandem_Repeat 227683 227716 50 + . . scaffold424 GLEAN mRNA 228786 243170 0.999973 - . ID=CGI_10014362; scaffold424 TRF Tandem_Repeat 239240 239318 86 + . . scaffold424 GLEAN promoter 243171 244170 0.999973 - . ID=CGI_10014362; scaffold424 GLEAN mRNA 244483 249302 0.920527 - . ID=CGI_10014363; scaffold424 GLEAN promoter 249303 250302 0.920527 - . ID=CGI_10014363; scaffold424 GLEAN promoter 250321 251320 1 + . ID=CGI_10014364; scaffold424 TRF Tandem_Repeat 250434 250480 87 + . . scaffold424 TRF Tandem_Repeat 250534 250601 129 + . . scaffold424 GLEAN mRNA 251321 252897 1 + . ID=CGI_10014364; scaffold424 GLEAN promoter 271649 272648 0.732872 + . ID=CGI_10014365; scaffold424 GLEAN promoter 272044 273043 0.989404 + . ID=CGI_10014366; scaffold424 GLEAN mRNA 272649 272933 0.732872 + . ID=CGI_10014365; scaffold424 GLEAN mRNA 273044 276931 0.989404 + . ID=CGI_10014366; scaffold424 TRF Tandem_Repeat 282863 283472 823 + . . scaffold424 TRF Tandem_Repeat 283020 283120 64 + . . scaffold424 TRF Tandem_Repeat 283020 283117 71 + . . scaffold424 TRF Tandem_Repeat 284133 284170 67 + . . scaffold424 TRF Tandem_Repeat 284324 284837 476 + . . scaffold424 GLEAN mRNA 292661 293011 0.999068 - . ID=CGI_10014367; scaffold424 GLEAN promoter 293012 294011 0.999068 - . ID=CGI_10014367; scaffold424 GLEAN mRNA 294240 295440 0.990962 - . ID=CGI_10014368; scaffold424 GLEAN promoter 295441 296440 0.990962 - . ID=CGI_10014368; scaffold424 GLEAN mRNA 295668 345533 0.349394 - . ID=CGI_10014369; scaffold424 TRF Tandem_Repeat 306174 306308 252 + . . scaffold424 TRF Tandem_Repeat 306180 306301 70 + . . scaffold424 TRF Tandem_Repeat 314281 314324 56 + . . scaffold424 TRF Tandem_Repeat 314281 314324 56 + . . scaffold424 TRF Tandem_Repeat 317589 317620 64 + . . scaffold424 TRF Tandem_Repeat 321659 321688 51 + . . scaffold424 TRF Tandem_Repeat 334465 334508 70 + . . scaffold424 TRF Tandem_Repeat 339304 339387 152 + . . scaffold424 GLEAN promoter 345534 346533 0.349394 - . ID=CGI_10014369; scaffold424 GLEAN mRNA 346734 349629 0.813095 - . ID=CGI_10014370; scaffold424 GLEAN promoter 349630 350629 0.813095 - . ID=CGI_10014370; scaffold424 WUBlastX LINE_L1-Tx1 351850 353337 240 + . . scaffold424 TRF Tandem_Repeat 358886 359828 1421 + . . scaffold424 TRF Tandem_Repeat 360004 360042 51 + . . scaffold424 TRF Tandem_Repeat 395098 395151 53 + . . scaffold424 TRF Tandem_Repeat 395099 395139 50 + . . scaffold42402 GLEAN mRNA 6137 7839 1 - . ID=CGI_10006787; scaffold42402 GLEAN promoter 7840 8839 1 - . ID=CGI_10006787; scaffold42402 WUBlastX LINE_L1 10000 10299 42 + . . scaffold42402 WUBlastX LINE_L1-Tx1 10144 10356 41 + . . scaffold42402 WUBlastX LINE_L1-Tx1 10189 10386 35 + . . scaffold42402 WUBlastX LINE_L1-Tx1 10544 10924 67 + . . scaffold42402 WUBlastX LINE_L1 10793 10930 77 + . . scaffold42402 WUBlastX LINE_L1-Tx1 10841 10948 45 + . . scaffold42402 WUBlastX LINE_L1-Tx1 10956 11870 207 + . . scaffold42402 WUBlastX LINE_L1 11436 11999 127 + . . scaffold42402 WUBlastX LINE_L1 11861 12148 117 + . . scaffold42402 WUBlastX LINE_L1-Tx1 11873 12490 53 + . . scaffold42402 WUBlastX LINE_L1-Tx1 11879 12214 80 + . . scaffold42402 WUBlastX LINE_L1 12386 12514 33 + . . scaffold42402 TRF Tandem_Repeat 14657 15705 1354 + . . scaffold42402 TRF Tandem_Repeat 15706 15861 235 + . . scaffold42402 TRF Tandem_Repeat 16036 17347 1613 + . . scaffold42402 TRF Tandem_Repeat 16040 17347 1459 + . . scaffold42402 TRF Tandem_Repeat 17447 17673 253 + . . scaffold42402 TRF Tandem_Repeat 18113 18183 115 + . . scaffold42402 WUBlastX LTR_Gypsy 20282 20506 35 + . . scaffold42402 WUBlastX LTR_Gypsy 20372 20494 56 + . . scaffold42402 WUBlastX LTR_Gypsy 20378 20569 52 + . . scaffold42402 WUBlastX LTR_Gypsy 20557 20949 78 + . . scaffold42402 WUBlastX LTR_Gypsy-Cigr 20623 21072 181 + . . scaffold42402 WUBlastX LTR_Gypsy 21012 21398 111 + . . scaffold42402 WUBlastX LTR_Gypsy-Cigr 21419 21616 71 + . . scaffold42402 WUBlastX LTR_Gypsy-Cigr 21631 21939 28 + . . scaffold42402 WUBlastX LTR_Gypsy-Cigr 21725 21847 46 + . . scaffold42402 WUBlastX LTR_Gypsy 21968 22204 29 + . . scaffold42402 TRF Tandem_Repeat 22782 22960 159 + . . scaffold42402 WUBlastX DNA_TcMar-Marin 26413 26970 124 - . . scaffold42402 TRF Tandem_Repeat 30612 30645 59 + . . scaffold42402 GLEAN promoter 33936 34935 0.190886 + . ID=CGI_10006788; scaffold42402 GLEAN mRNA 34936 36704 0.190886 + . ID=CGI_10006788; scaffold42402 GLEAN mRNA 37273 38151 1 - . ID=CGI_10006789; scaffold42402 GLEAN promoter 38152 39151 1 - . ID=CGI_10006789; scaffold42402 GLEAN mRNA 39853 52134 0.999675 - . ID=CGI_10006790; scaffold42402 TRF Tandem_Repeat 41258 41516 245 + . . scaffold42402 TRF Tandem_Repeat 43149 43722 837 + . . scaffold42402 TRF Tandem_Repeat 44617 44922 277 + . . scaffold42402 TRF Tandem_Repeat 48917 49838 1251 + . . scaffold42402 GLEAN promoter 52081 53080 0.999913 + . ID=CGI_10006791; scaffold42402 GLEAN promoter 52135 53134 0.999675 - . ID=CGI_10006790; scaffold42402 GLEAN mRNA 53081 65258 0.999913 + . ID=CGI_10006791; scaffold42402 TRF Tandem_Repeat 53896 54295 349 + . . scaffold42402 TRF Tandem_Repeat 55754 55893 217 + . . scaffold42402 GLEAN mRNA 67382 80862 0.81141 - . ID=CGI_10006792; scaffold42402 TRF Tandem_Repeat 70611 71140 851 + . . scaffold42402 TRF Tandem_Repeat 77971 78293 592 + . . scaffold42402 GLEAN promoter 80863 81862 0.81141 - . ID=CGI_10006792; scaffold42402 TRF Tandem_Repeat 88803 88899 178 + . . scaffold42402 GLEAN promoter 89325 90324 0.915589 + . ID=CGI_10006793; scaffold42402 GLEAN mRNA 90325 106302 0.915589 + . ID=CGI_10006793; scaffold42402 TRF Tandem_Repeat 96245 96438 222 + . . scaffold42402 TRF Tandem_Repeat 97568 97722 199 + . . scaffold42402 TRF Tandem_Repeat 99443 99509 120 + . . scaffold42402 TRF Tandem_Repeat 101526 101742 368 + . . scaffold42402 TRF Tandem_Repeat 104326 104749 512 + . . scaffold42402 TRF Tandem_Repeat 104326 104719 465 + . . scaffold42402 TRF Tandem_Repeat 111227 111264 67 + . . scaffold42402 GLEAN mRNA 111265 122363 1 - . ID=CGI_10006794; scaffold42402 TRF Tandem_Repeat 116507 116729 306 + . . scaffold42402 TRF Tandem_Repeat 120113 121867 1944 + . . scaffold42402 TRF Tandem_Repeat 121178 121484 186 + . . scaffold42402 GLEAN promoter 122364 123363 1 - . ID=CGI_10006794; scaffold42402 TRF Tandem_Repeat 123513 123558 74 + . . scaffold42402 GLEAN mRNA 124224 132825 0.999027 - . ID=CGI_10006795; scaffold42402 GLEAN promoter 126799 127798 1 + . ID=CGI_10006796; scaffold42402 GLEAN mRNA 127799 151962 1 + . ID=CGI_10006796; scaffold42402 WUBlastX LINE_RTE-X 129965 130099 39 + . . scaffold42402 WUBlastX LINE_RTE-X 130059 130262 68 + . . scaffold42402 WUBlastX LINE_RTE-X 131009 131158 86 + . . scaffold42402 WUBlastX LINE_RTE-X 131167 131223 44 + . . scaffold42402 WUBlastX LINE_RTE-X 131188 131244 28 + . . scaffold42402 GLEAN promoter 132826 133825 0.999027 - . ID=CGI_10006795; scaffold42402 TRF Tandem_Repeat 155068 155122 110 + . . scaffold42408 GLEAN promoter 1 608 0.999395 + . ID=CGI_10006745; scaffold42408 GLEAN mRNA 609 6911 0.999395 + . ID=CGI_10006745; scaffold42408 GLEAN promoter 7105 8104 1 + . ID=CGI_10006747; scaffold42408 GLEAN mRNA 7471 15569 0.999999 - . ID=CGI_10006746; scaffold42408 GLEAN mRNA 8105 17493 1 + . ID=CGI_10006747; scaffold42408 GLEAN promoter 15570 16569 0.999999 - . ID=CGI_10006746; scaffold42408 GLEAN mRNA 19074 20442 0.831143 - . ID=CGI_10006748; scaffold42408 GLEAN promoter 20443 21442 0.831143 - . ID=CGI_10006748; scaffold42408 GLEAN mRNA 22042 24866 1 - . ID=CGI_10006749; scaffold42408 GLEAN promoter 24867 25866 1 - . ID=CGI_10006749; scaffold42408 TRF Tandem_Repeat 25400 25457 116 + . . scaffold42408 TRF Tandem_Repeat 25522 25577 112 + . . scaffold42408 GLEAN mRNA 29212 33967 0.999532 - . ID=CGI_10006750; scaffold42408 GLEAN promoter 33968 34967 0.999532 - . ID=CGI_10006750; scaffold42408 WUBlastX DNA_hAT-Tip100 38445 38954 67 - . . scaffold42408 WUBlastX DNA_hAT-Tip100 38986 39477 103 - . . scaffold42408 TRF Tandem_Repeat 43030 43359 288 + . . scaffold42408 TRF Tandem_Repeat 43039 43359 329 + . . scaffold42408 TRF Tandem_Repeat 45139 45487 332 + . . scaffold42408 TRF Tandem_Repeat 45171 45487 216 + . . scaffold42408 TRF Tandem_Repeat 63764 64986 1307 + . . scaffold42408 TRF Tandem_Repeat 64217 65026 1111 + . . scaffold42408 TRF Tandem_Repeat 72202 72499 551 + . . scaffold42408 TRF Tandem_Repeat 103300 104087 1078 + . . scaffold42408 TRF Tandem_Repeat 103300 104197 1102 + . . scaffold42408 GLEAN mRNA 111494 115012 0.832978 - . ID=CGI_10006751; scaffold42408 WUBlastX LINE_L1 112656 113069 54 + . . scaffold42408 WUBlastX LINE_L1-Tx1 112779 113108 91 + . . scaffold42408 WUBlastX LINE_L1-Tx1 112851 113072 94 + . . scaffold42408 WUBlastX LINE_L1 112982 113233 71 + . . scaffold42408 WUBlastX LINE_L1-Tx1 113042 113380 46 + . . scaffold42408 WUBlastX LINE_L1-Tx1 113084 113272 60 + . . scaffold42408 WUBlastX LINE_L1-Tx1 113418 113525 22 + . . scaffold42408 WUBlastX LINE_L1-Tx1 113436 113525 31 + . . scaffold42408 GLEAN promoter 115013 116012 0.832978 - . ID=CGI_10006751; scaffold42408 GLEAN mRNA 115409 115636 1 - . ID=CGI_10006752; scaffold42408 GLEAN promoter 115637 116636 1 - . ID=CGI_10006752; scaffold42408 WUBlastX RC_Helitron 115909 116046 42 - . . scaffold42408 WUBlastX RC_Helitron 116084 117067 103 - . . scaffold42408 WUBlastX RC_Helitron 116840 117118 60 - . . scaffold42408 WUBlastX RC_Helitron 117115 117996 630 - . . scaffold42408 WUBlastX RC_Helitron 118638 118829 25 - . . scaffold42408 WUBlastX RC_Helitron 118674 121460 1783 - . . scaffold42408 WUBlastX LINE_RTE-BovB 126833 127030 35 + . . scaffold42408 WUBlastX LINE_RTE-BovB 126901 127230 66 + . . scaffold42408 WUBlastX LINE_RTE-BovB 126910 127437 51 + . . scaffold42408 WUBlastX LINE_RTE-BovB 127801 127932 69 + . . scaffold42408 TRF Tandem_Repeat 139680 139737 53 + . . scaffold42408 TRF Tandem_Repeat 160862 160893 64 + . . scaffold42422 TRF Tandem_Repeat 340 610 266 + . . scaffold42422 TRF Tandem_Repeat 414 610 84 + . . scaffold42422 TRF Tandem_Repeat 1284 1318 70 + . . scaffold42422 TRF Tandem_Repeat 1700 1729 60 + . . scaffold42422 GLEAN promoter 1785 2784 0.558382 + . ID=CGI_10006847; scaffold42422 TRF Tandem_Repeat 2646 2682 74 + . . scaffold42422 GLEAN mRNA 2785 3606 0.558382 + . ID=CGI_10006847; scaffold42422 GLEAN promoter 11704 12703 0.860881 + . ID=CGI_10006848; scaffold42422 GLEAN mRNA 12704 28700 0.860881 + . ID=CGI_10006848; scaffold42422 TRF Tandem_Repeat 15003 15099 180 + . . scaffold42422 GLEAN promoter 34286 35285 0.805775 + . ID=CGI_10006849; scaffold42422 GLEAN mRNA 35286 48142 0.805775 + . ID=CGI_10006849; scaffold42422 TRF Tandem_Repeat 43421 43467 85 + . . scaffold42422 GLEAN mRNA 49435 65125 1 - . ID=CGI_10006850; scaffold42422 TRF Tandem_Repeat 53381 53414 50 + . . scaffold42422 GLEAN promoter 65126 66125 1 - . ID=CGI_10006850; scaffold42422 GLEAN promoter 72779 73778 1 + . ID=CGI_10006851; scaffold42422 GLEAN mRNA 73779 80694 1 + . ID=CGI_10006851; scaffold42422 GLEAN mRNA 83970 99227 0.593391 - . ID=CGI_10006852; scaffold42422 GLEAN promoter 99228 100227 0.593391 - . ID=CGI_10006852; scaffold42422 GLEAN promoter 101269 102268 1 + . ID=CGI_10006853; scaffold42422 GLEAN mRNA 102269 107585 1 + . ID=CGI_10006853; scaffold42422 TRF Tandem_Repeat 104516 104559 79 + . . scaffold42422 TRF Tandem_Repeat 106103 106170 70 + . . scaffold42422 GLEAN promoter 113829 114828 0.999235 + . ID=CGI_10006854; scaffold42422 TRF Tandem_Repeat 114265 114379 76 + . . scaffold42422 GLEAN mRNA 114829 123344 0.999235 + . ID=CGI_10006854; scaffold42422 TRF Tandem_Repeat 124218 124242 50 + . . scaffold42422 GLEAN promoter 131103 132102 1 + . ID=CGI_10006855; scaffold42422 GLEAN mRNA 132103 132942 1 + . ID=CGI_10006855; scaffold42422 WUBlastX LINE_RTE-BovB 134924 136132 347 - . . scaffold42422 WUBlastX LINE_RTE-BovB 135952 136755 178 - . . scaffold42422 WUBlastX LINE_RTE-RTE 137098 137169 23 - . . scaffold42422 WUBlastX LINE_L1-Tx1 139423 140130 33 + . . scaffold42422 GLEAN mRNA 144758 162950 0.875625 - . ID=CGI_10006856; scaffold42422 TRF Tandem_Repeat 159643 159669 54 + . . scaffold42422 GLEAN promoter 162951 163950 0.875625 - . ID=CGI_10006856; scaffold42440 TRF Tandem_Repeat 193 253 122 + . . scaffold42440 GLEAN promoter 2011 3010 1 + . ID=CGI_10006901; scaffold42440 GLEAN mRNA 3011 5350 1 + . ID=CGI_10006901; scaffold42440 WUBlastX DNA_Merlin 44148 44531 104 - . . scaffold42440 WUBlastX DNA_Merlin 44319 44801 149 - . . scaffold42440 TRF Tandem_Repeat 45140 45353 96 + . . scaffold42440 GLEAN promoter 51826 52825 0.517399 + . ID=CGI_10006902; scaffold42440 GLEAN mRNA 52826 113781 0.517399 + . ID=CGI_10006902; scaffold42440 TRF Tandem_Repeat 62122 62168 76 + . . scaffold42440 TRF Tandem_Repeat 64221 64254 59 + . . scaffold42440 TRF Tandem_Repeat 75369 75458 144 + . . scaffold42440 TRF Tandem_Repeat 85667 85706 80 + . . scaffold42440 TRF Tandem_Repeat 89562 89602 82 + . . scaffold42440 TRF Tandem_Repeat 98446 98495 100 + . . scaffold42440 TRF Tandem_Repeat 104999 105214 143 + . . scaffold42440 TRF Tandem_Repeat 105005 105247 215 + . . scaffold42440 TRF Tandem_Repeat 106949 107011 54 + . . scaffold42440 TRF Tandem_Repeat 106949 107073 80 + . . scaffold42440 TRF Tandem_Repeat 110144 110212 50 + . . scaffold42440 TRF Tandem_Repeat 110159 110212 56 + . . scaffold42440 TRF Tandem_Repeat 142580 142656 93 + . . scaffold42440 TRF Tandem_Repeat 142580 142656 104 + . . scaffold42440 TRF Tandem_Repeat 148306 148350 81 + . . scaffold42440 TRF Tandem_Repeat 156958 156993 54 + . . scaffold42440 TRF Tandem_Repeat 160444 160510 89 + . . scaffold42446 GLEAN mRNA 1936 12483 1 - . ID=CGI_10006840; scaffold42446 GLEAN promoter 11956 12955 0.999675 + . ID=CGI_10006841; scaffold42446 GLEAN promoter 12484 13483 1 - . ID=CGI_10006840; scaffold42446 GLEAN mRNA 12956 24069 0.999675 + . ID=CGI_10006841; scaffold42446 GLEAN promoter 24811 25810 0.999351 + . ID=CGI_10006842; scaffold42446 GLEAN mRNA 25811 37134 0.999351 + . ID=CGI_10006842; scaffold42446 GLEAN promoter 74210 75209 0.5 + . ID=CGI_10006843; scaffold42446 GLEAN mRNA 75210 85252 0.5 + . ID=CGI_10006843; scaffold42446 GLEAN mRNA 86134 106331 0.312737 - . ID=CGI_10006844; scaffold42446 GLEAN promoter 106332 107331 0.312737 - . ID=CGI_10006844; scaffold42446 GLEAN mRNA 112794 122029 1 - . ID=CGI_10006845; scaffold42446 GLEAN promoter 122030 123029 1 - . ID=CGI_10006845; scaffold42446 GLEAN mRNA 124314 126631 1 - . ID=CGI_10006846; scaffold42446 GLEAN promoter 126632 127631 1 - . ID=CGI_10006846; scaffold42448 TRF Tandem_Repeat 770 834 130 + . . scaffold42448 GLEAN mRNA 4885 15788 1 - . ID=CGI_10006874; scaffold42448 GLEAN promoter 15789 16788 1 - . ID=CGI_10006874; scaffold42448 GLEAN mRNA 17202 17570 0.999996 - . ID=CGI_10006875; scaffold42448 GLEAN promoter 17571 18570 0.999996 - . ID=CGI_10006875; scaffold42448 WUBlastX DNA_TcMar-Tc1 19613 20416 127 + . . scaffold42448 GLEAN mRNA 20644 21000 0.999048 - . ID=CGI_10006876; scaffold42448 GLEAN promoter 21001 22000 0.999048 - . ID=CGI_10006876; scaffold42448 TRF Tandem_Repeat 22768 22820 88 + . . scaffold42448 WUBlastX LINE_L1-Tx1 23908 24405 133 - . . scaffold42448 WUBlastX LINE_L1 24319 24666 33 - . . scaffold42448 WUBlastX LINE_L1-Tx1 24460 24666 47 - . . scaffold42448 WUBlastX LINE_L1-Tx1 24616 24684 20 - . . scaffold42448 WUBlastX DNA_hAT-Tip100 27306 29063 1305 - . . scaffold42448 WUBlastX DNA_hAT-Tip100 29066 29596 355 - . . scaffold42448 WUBlastX DNA_hAT-Tip100 29069 29752 211 - . . scaffold42448 WUBlastX DNA_hAT-Tip100 29075 29905 157 - . . scaffold42448 WUBlastX RC_Helitron 30017 30250 51 - . . scaffold42448 WUBlastX RC_Helitron 30050 30220 64 - . . scaffold42448 WUBlastX DNA_TcMar-Tc1 31885 32826 237 + . . scaffold42448 WUBlastX DNA_hAT-Tip100 33677 34531 275 + . . scaffold42448 WUBlastX DNA_hAT-Tip100 33824 34531 294 + . . scaffold42448 WUBlastX DNA_hAT-Tip100 34519 35370 440 + . . scaffold42448 WUBlastX DNA_hAT-Tip100 34534 35985 332 + . . scaffold42448 TRF Tandem_Repeat 37955 37983 58 + . . scaffold42448 GLEAN promoter 38608 39607 0.839335 + . ID=CGI_10006877; scaffold42448 TRF Tandem_Repeat 38741 38776 54 + . . scaffold42448 TRF Tandem_Repeat 38742 38772 53 + . . scaffold42448 GLEAN mRNA 39608 50549 0.839335 + . ID=CGI_10006877; scaffold42448 TRF Tandem_Repeat 40803 40865 54 + . . scaffold42448 GLEAN mRNA 41435 49214 0.999393 - . ID=CGI_10006878; scaffold42448 TRF Tandem_Repeat 43120 43216 59 + . . scaffold42448 TRF Tandem_Repeat 43277 43345 57 + . . scaffold42448 GLEAN promoter 49215 50214 0.999393 - . ID=CGI_10006878; scaffold42448 TRF Tandem_Repeat 52634 52674 82 + . . scaffold42448 TRF Tandem_Repeat 52950 53005 112 + . . scaffold42448 GLEAN mRNA 54615 56153 1 - . ID=CGI_10006879; scaffold42448 GLEAN promoter 56154 57153 1 - . ID=CGI_10006879; scaffold42448 TRF Tandem_Repeat 57888 57926 60 + . . scaffold42448 GLEAN promoter 59144 60143 1 + . ID=CGI_10006880; scaffold42448 GLEAN mRNA 60144 66377 1 + . ID=CGI_10006880; scaffold42448 GLEAN promoter 69168 70167 1 + . ID=CGI_10006881; scaffold42448 GLEAN mRNA 70168 72895 1 + . ID=CGI_10006881; scaffold42448 TRF Tandem_Repeat 75284 75437 72 + . . scaffold42448 WUBlastX LINE_L1-Tx1 76409 76864 76 - . . scaffold42448 WUBlastX LINE_L1-Tx1 76544 76879 93 - . . scaffold42448 WUBlastX LINE_L1-Tx1 76559 77035 83 - . . scaffold42448 WUBlastX LINE_L1 77896 78339 78 - . . scaffold42448 WUBlastX LINE_L1 77968 78339 139 - . . scaffold42448 WUBlastX LINE_L1-Tx1 78064 78426 83 - . . scaffold42448 WUBlastX LINE_L1-Tx1 78067 78366 179 - . . scaffold42448 WUBlastX LINE_L1 78636 79007 139 - . . scaffold42448 WUBlastX LINE_L1-Tx1 78732 79094 83 - . . scaffold42448 WUBlastX LINE_L1-Tx1 78735 79034 179 - . . scaffold42448 TRF Tandem_Repeat 85516 85552 74 + . . scaffold42448 TRF Tandem_Repeat 93518 93557 80 + . . scaffold42448 WUBlastX LINE_RTE-X 105030 105173 59 - . . scaffold42448 GLEAN mRNA 109286 115966 0.999468 - . ID=CGI_10006882; scaffold42448 GLEAN promoter 115967 116966 0.999468 - . ID=CGI_10006882; scaffold42448 GLEAN mRNA 118374 122367 1 - . ID=CGI_10006883; scaffold42448 GLEAN promoter 122368 123367 1 - . ID=CGI_10006883; scaffold42448 TRF Tandem_Repeat 123612 123665 108 + . . scaffold42448 GLEAN mRNA 125358 128000 0.638734 - . ID=CGI_10006884; scaffold42448 TRF Tandem_Repeat 126019 126227 201 + . . scaffold42448 TRF Tandem_Repeat 126029 126211 280 + . . scaffold42448 GLEAN promoter 128001 129000 0.638734 - . ID=CGI_10006884; scaffold42448 TRF Tandem_Repeat 133362 133494 179 + . . scaffold42448 TRF Tandem_Repeat 133732 134001 249 + . . scaffold42448 GLEAN mRNA 134182 145428 0.660675 - . ID=CGI_10006885; scaffold42448 TRF Tandem_Repeat 134463 134929 727 + . . scaffold42448 GLEAN promoter 134832 135831 0.761236 + . ID=CGI_10006886; scaffold42448 GLEAN mRNA 135832 161635 0.761236 + . ID=CGI_10006886; scaffold42448 GLEAN promoter 145429 146428 0.660675 - . ID=CGI_10006885; scaffold42448 TRF Tandem_Repeat 149348 150229 1281 + . . scaffold42450 GLEAN mRNA 230 23931 0.999948 - . ID=CGI_10006895; scaffold42450 TRF Tandem_Repeat 5199 6219 1141 + . . scaffold42450 TRF Tandem_Repeat 22363 22416 92 + . . scaffold42450 GLEAN promoter 23932 24931 0.999948 - . ID=CGI_10006895; scaffold42450 GLEAN promoter 24565 25564 1 + . ID=CGI_10006896; scaffold42450 GLEAN mRNA 25565 30737 1 + . ID=CGI_10006896; scaffold42450 GLEAN mRNA 33934 49062 1 - . ID=CGI_10006897; scaffold42450 GLEAN promoter 49063 50062 1 - . ID=CGI_10006897; scaffold42450 WUBlastX DNA_TcMar-Tc1 52880 53110 51 + . . scaffold42450 WUBlastX DNA_TcMar-Tc1 52931 53299 86 + . . scaffold42450 WUBlastX DNA_TcMar-Tc1 53125 53619 152 + . . scaffold42450 WUBlastX DNA_IS4EU 53807 54112 53 + . . scaffold42450 WUBlastX DNA_IS4EU 55104 56177 426 + . . scaffold42450 WUBlastX DNA_IS4EU 56354 57430 163 - . . scaffold42450 WUBlastX DNA_IS4EU 58066 58443 108 - . . scaffold42450 WUBlastX DNA_Kolobok-IS4 58066 58587 96 - . . scaffold42450 WUBlastX DNA_TcMar-Tc1 58553 59008 161 + . . scaffold42450 WUBlastX DNA_TcMar-Tc1 58697 59008 171 + . . scaffold42450 WUBlastX LINE_RTE-X 70670 70762 51 + . . scaffold42450 GLEAN mRNA 71252 79312 0.999598 - . ID=CGI_10006899; scaffold42450 TRF Tandem_Repeat 75304 75350 94 + . . scaffold42450 GLEAN promoter 79313 80312 0.999598 - . ID=CGI_10006899; scaffold42450 TRF Tandem_Repeat 82011 82054 52 + . . scaffold42450 TRF Tandem_Repeat 109513 109572 120 + . . scaffold42450 TRF Tandem_Repeat 109572 109608 74 + . . scaffold42450 TRF Tandem_Repeat 114414 114492 149 + . . scaffold42450 WUBlastX DNA_Harbinger 115028 115261 50 - . . scaffold42450 WUBlastX LINE_L1-Tx1 126212 126616 52 + . . scaffold42450 WUBlastX LINE_L1-Tx1 126640 126822 50 + . . scaffold42450 TRF Tandem_Repeat 127152 127188 74 + . . scaffold42450 TRF Tandem_Repeat 127818 127903 172 + . . scaffold42450 TRF Tandem_Repeat 128501 128594 179 + . . scaffold42450 TRF Tandem_Repeat 133739 133792 57 + . . scaffold42450 TRF Tandem_Repeat 133740 133785 51 + . . scaffold42450 WUBlastX LTR_Gypsy 138663 139118 254 - . . scaffold42450 WUBlastX LTR_Gypsy 139123 139374 150 - . . scaffold42450 WUBlastX LTR_Gypsy 140130 141374 842 - . . scaffold42450 WUBlastX LTR_Gypsy 141281 141751 124 - . . scaffold42450 WUBlastX LTR_Gypsy 141479 141829 268 - . . scaffold42450 WUBlastX LTR_Ngaro 147869 148414 216 - . . scaffold42450 WUBlastX LTR_Ngaro 148411 148503 31 - . . scaffold42450 WUBlastX LTR_Ngaro 148500 148751 47 - . . scaffold42450 WUBlastX LTR_Ngaro 148781 149695 531 - . . scaffold42450 WUBlastX LTR_Ngaro 149691 150116 113 - . . scaffold42450 WUBlastX LTR_Ngaro 149739 150095 225 - . . scaffold42450 WUBlastX LTR_Ngaro 150079 150393 91 - . . scaffold42450 WUBlastX LTR_Ngaro 150130 150351 103 - . . scaffold42450 GLEAN mRNA 150672 151088 0.999372 - . ID=CGI_10006900; scaffold42450 GLEAN promoter 151089 152088 0.999372 - . ID=CGI_10006900; scaffold42450 TRF Tandem_Repeat 155319 155350 64 + . . scaffold42450 WUBlastX LINE_L1-Tx1 160965 161459 89 + . . scaffold42450 WUBlastX LINE_L1-Tx1 161052 161417 110 + . . scaffold42450 WUBlastX LTR_Pao 163540 163623 32 - . . scaffold42450 WUBlastX LTR_Pao 163650 163958 213 - . . scaffold42466 GLEAN promoter 1 1 0.999064 + . ID=CGI_10006932; scaffold42466 GLEAN mRNA 2 10643 0.999064 + . ID=CGI_10006932; scaffold42466 GLEAN mRNA 4103 33125 0.99557 - . ID=CGI_10006933; scaffold42466 TRF Tandem_Repeat 11257 12275 1040 + . . scaffold42466 TRF Tandem_Repeat 17331 17807 664 + . . scaffold42466 GLEAN promoter 22237 23236 0.999965 + . ID=CGI_10006934; scaffold42466 GLEAN mRNA 23237 24956 0.999965 + . ID=CGI_10006934; scaffold42466 TRF Tandem_Repeat 26906 27365 787 + . . scaffold42466 TRF Tandem_Repeat 29864 30306 635 + . . scaffold42466 GLEAN promoter 32273 33272 0.996819 + . ID=CGI_10006935; scaffold42466 GLEAN promoter 33126 34125 0.99557 - . ID=CGI_10006933; scaffold42466 GLEAN mRNA 33273 40294 0.996819 + . ID=CGI_10006935; scaffold42466 TRF Tandem_Repeat 38011 38806 1240 + . . scaffold42466 GLEAN mRNA 41020 46000 0.999375 - . ID=CGI_10006936; scaffold42466 TRF Tandem_Repeat 42212 42500 170 + . . scaffold42466 GLEAN promoter 46001 47000 0.999375 - . ID=CGI_10006936; scaffold42466 TRF Tandem_Repeat 47739 48137 219 + . . scaffold42466 GLEAN mRNA 52041 73097 1 - . ID=CGI_10006937; scaffold42466 TRF Tandem_Repeat 57919 58381 521 + . . scaffold42466 GLEAN promoter 73098 74097 1 - . ID=CGI_10006937; scaffold42466 TRF Tandem_Repeat 73117 73582 785 + . . scaffold42466 GLEAN mRNA 73863 88034 0.999949 - . ID=CGI_10006938; scaffold42466 TRF Tandem_Repeat 87093 87143 102 + . . scaffold42466 TRF Tandem_Repeat 87187 87236 100 + . . scaffold42466 GLEAN promoter 88035 89034 0.999949 - . ID=CGI_10006938; scaffold42466 GLEAN promoter 88418 89417 1 + . ID=CGI_10006939; scaffold42466 GLEAN mRNA 89418 93740 1 + . ID=CGI_10006939; scaffold42466 GLEAN mRNA 91601 112610 0.999675 - . ID=CGI_10006940; scaffold42466 GLEAN promoter 103544 104543 0.999661 + . ID=CGI_10006941; scaffold42466 GLEAN mRNA 104544 105122 0.999661 + . ID=CGI_10006941; scaffold42466 GLEAN promoter 110968 111967 0.500645 + . ID=CGI_10006942; scaffold42466 GLEAN mRNA 111968 131665 0.500645 + . ID=CGI_10006942; scaffold42466 GLEAN promoter 112611 113610 0.999675 - . ID=CGI_10006940; scaffold42466 WUBlastX LINE_RTE-X 114642 115049 23 + . . scaffold42466 WUBlastX LINE_RTE-X 114795 115088 48 + . . scaffold42466 WUBlastX LINE_RTE-X 114798 115046 62 + . . scaffold42466 TRF Tandem_Repeat 123339 124010 977 + . . scaffold42466 TRF Tandem_Repeat 124369 124575 360 + . . scaffold42466 GLEAN mRNA 125860 144649 0.999968 - . ID=CGI_10006943; scaffold42466 TRF Tandem_Repeat 142017 142100 84 + . . scaffold42466 GLEAN promoter 144650 145649 0.999968 - . ID=CGI_10006943; scaffold42466 TRF Tandem_Repeat 151076 151993 1324 + . . scaffold42466 TRF Tandem_Repeat 153400 153453 74 + . . scaffold42466 GLEAN mRNA 153766 158919 0.988636 - . ID=CGI_10006944; scaffold42466 GLEAN promoter 158920 159919 0.988636 - . ID=CGI_10006944; scaffold42466 GLEAN promoter 161207 162206 1 + . ID=CGI_10006945; scaffold42466 GLEAN mRNA 162207 165758 1 + . ID=CGI_10006945; scaffold42466 TRF Tandem_Repeat 163700 163755 53 + . . scaffold42486 TRF Tandem_Repeat 1794 1980 161 + . . scaffold42486 TRF Tandem_Repeat 1799 1971 119 + . . scaffold42486 TRF Tandem_Repeat 1805 1900 129 + . . scaffold42486 TRF Tandem_Repeat 1979 2189 181 + . . scaffold42486 GLEAN promoter 2061 3060 0.614189 + . ID=CGI_10006974; scaffold42486 GLEAN mRNA 3061 5659 0.614189 + . ID=CGI_10006974; scaffold42486 GLEAN mRNA 13709 48840 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 20823 21010 145 + . . scaffold42486 TRF Tandem_Repeat 26255 26425 173 + . . scaffold42486 TRF Tandem_Repeat 26255 26425 191 + . . scaffold42486 TRF Tandem_Repeat 26425 26562 104 + . . scaffold42486 TRF Tandem_Repeat 26752 26886 118 + . . scaffold42486 TRF Tandem_Repeat 35221 35295 143 + . . scaffold42486 TRF Tandem_Repeat 38347 39010 755 + . . scaffold42486 TRF Tandem_Repeat 39238 39437 262 + . . scaffold42486 TRF Tandem_Repeat 39239 39462 256 + . . scaffold42486 TRF Tandem_Repeat 43668 43730 126 + . . scaffold42486 GLEAN promoter 48841 49840 0.999999 - . ID=CGI_10006975; scaffold42486 TRF Tandem_Repeat 50454 50504 93 + . . scaffold42486 GLEAN mRNA 51183 55638 1 - . ID=CGI_10006976; scaffold42486 TRF Tandem_Repeat 54989 55257 529 + . . scaffold42486 GLEAN promoter 55639 56638 1 - . ID=CGI_10006976; scaffold42486 GLEAN mRNA 58489 60704 1 - . ID=CGI_10006977; scaffold42486 GLEAN promoter 60068 61067 0.996974 + . ID=CGI_10006978; scaffold42486 GLEAN promoter 60705 61704 1 - . ID=CGI_10006977; scaffold42486 GLEAN mRNA 61068 88449 0.996974 + . ID=CGI_10006978; scaffold42486 TRF Tandem_Repeat 84003 84184 166 + . . scaffold42486 TRF Tandem_Repeat 85795 85836 84 + . . scaffold42486 GLEAN mRNA 92115 98659 1 - . ID=CGI_10006979; scaffold42486 TRF Tandem_Repeat 94557 95702 1021 + . . scaffold42486 TRF Tandem_Repeat 94557 95888 1015 + . . scaffold42486 GLEAN promoter 98660 99659 1 - . ID=CGI_10006979; scaffold42486 TRF Tandem_Repeat 99164 99299 154 + . . scaffold42486 TRF Tandem_Repeat 100646 100757 147 + . . scaffold42486 GLEAN promoter 102896 103895 0.78751 + . ID=CGI_10006980; scaffold42486 GLEAN mRNA 103896 132517 0.78751 + . ID=CGI_10006980; scaffold42486 GLEAN mRNA 135900 139846 0.777025 - . ID=CGI_10006981; scaffold42486 TRF Tandem_Repeat 139368 139409 84 + . . scaffold42486 TRF Tandem_Repeat 139490 139517 56 + . . scaffold42486 TRF Tandem_Repeat 139593 139624 55 + . . scaffold42486 GLEAN promoter 139847 140846 0.777025 - . ID=CGI_10006981; scaffold42486 GLEAN mRNA 141403 154918 0.998251 - . ID=CGI_10006982; scaffold42486 WUBlastX DNA_TcMar-Tc1 148336 148434 29 + . . scaffold42486 WUBlastX DNA_TcMar-Tc1 148449 149078 228 + . . scaffold42486 WUBlastX DNA_TcMar-Tc1 149068 149301 165 + . . scaffold42486 WUBlastX DNA_Academ 153670 153948 44 - . . scaffold42486 GLEAN promoter 154919 155918 0.998251 - . ID=CGI_10006982; scaffold42486 WUBlastX LTR_DIRS 159431 160207 179 + . . scaffold42486 WUBlastX LTR_DIRS 160231 160446 121 + . . scaffold42486 WUBlastX LTR_DIRS 160407 160889 180 + . . scaffold42486 WUBlastX LTR_DIRS 161364 161621 49 + . . scaffold42486 WUBlastX LTR_DIRS 161621 161746 69 + . . scaffold42486 WUBlastX LTR_DIRS 161722 162303 200 + . . scaffold42486 WUBlastX LTR_DIRS 162478 162813 142 + . . scaffold42486 WUBlastX LTR_DIRS? 167196 167588 112 + . . scaffold42490 TRF Tandem_Repeat 3455 3484 60 + . . scaffold42490 WUBlastX DNA_Maverick 7152 7418 46 + . . scaffold42490 WUBlastX DNA_Maverick 7179 7403 122 + . . scaffold42490 WUBlastX DNA_Maverick 7448 7600 71 + . . scaffold42490 WUBlastX DNA_Maverick 7448 7642 51 + . . scaffold42490 WUBlastX LTR_Gypsy 11513 12475 229 - . . scaffold42490 WUBlastX LTR_Gypsy 11723 12475 229 - . . scaffold42490 WUBlastX LTR_Gypsy 11879 12475 294 - . . scaffold42490 WUBlastX LTR_Gypsy 12501 12653 70 - . . scaffold42490 WUBlastX LTR_Gypsy-Cigr 12519 12719 52 - . . scaffold42490 WUBlastX LTR_Gypsy 12887 13522 101 - . . scaffold42490 WUBlastX LTR_Gypsy 12998 13519 135 - . . scaffold42490 TRF Tandem_Repeat 18856 19557 885 + . . scaffold42490 WUBlastX LTR_DIRS 24465 25127 50 + . . scaffold42490 WUBlastX LINE_L1 30769 31044 23 - . . scaffold42490 WUBlastX LINE_L1 31227 31496 43 - . . scaffold42490 WUBlastX LINE_L1-Tx1 31535 31777 44 - . . scaffold42490 WUBlastX LINE_L1-Tx1 31583 32548 161 - . . scaffold42490 WUBlastX LINE_L1-Tx1 32126 32551 258 - . . scaffold42490 WUBlastX LINE_L1-Tx1 32132 32647 242 - . . scaffold42490 WUBlastX LINE_L1 32556 32726 52 - . . scaffold42490 WUBlastX LINE_L1 32777 32941 27 - . . scaffold42490 WUBlastX LINE_L1-Tx1 32810 33685 216 - . . scaffold42490 WUBlastX LINE_CR1 34592 34981 179 - . . scaffold42490 WUBlastX DNA_NOF 37466 37834 90 - . . scaffold42490 WUBlastX DNA_NOF 38055 38303 21 - . . scaffold42490 WUBlastX LTR_Gypsy 43871 44179 34 + . . scaffold42490 WUBlastX LTR_Gypsy 44030 44311 96 + . . scaffold42490 WUBlastX LTR_Gypsy 44314 45321 58 + . . scaffold42490 WUBlastX LTR_Gypsy 44314 44577 113 + . . scaffold42490 WUBlastX LTR_Gypsy 45007 45720 190 + . . scaffold42490 WUBlastX LTR_Gypsy 45768 46763 808 + . . scaffold42490 WUBlastX LTR_Gypsy 46757 47026 98 + . . scaffold42490 WUBlastX LTR_Gypsy-Cigr 46805 48445 778 + . . scaffold42490 WUBlastX LTR_Gypsy 47675 48592 52 + . . scaffold42490 WUBlastX LTR_Gypsy 48574 48657 34 + . . scaffold42490 WUBlastX LTR_Gypsy-Cigr 48586 48723 27 + . . scaffold42490 TRF Tandem_Repeat 54165 54223 118 + . . scaffold42490 WUBlastX LINE_L1-Tx1 62952 63140 25 - . . scaffold42490 WUBlastX LINE_L1 62985 63158 28 - . . scaffold42490 WUBlastX LINE_L1 63018 63728 29 - . . scaffold42490 WUBlastX LINE_L1-Tx1 63510 63722 39 - . . scaffold42490 WUBlastX LINE_L1-Tx1 63591 63710 41 - . . scaffold42490 WUBlastX LINE_L1-Tx1 63844 64224 33 - . . scaffold42490 WUBlastX LINE_L1-Tx1 63946 64275 34 - . . scaffold42490 WUBlastX LINE_L1-Tx1 64146 65135 449 - . . scaffold42490 TRF Tandem_Repeat 70199 70249 102 + . . scaffold42490 GLEAN mRNA 81729 92784 0.999675 - . ID=CGI_10007004; scaffold42490 TRF Tandem_Repeat 90255 90286 55 + . . scaffold42490 TRF Tandem_Repeat 90315 90364 66 + . . scaffold42490 GLEAN promoter 92785 93784 0.999675 - . ID=CGI_10007004; scaffold42490 TRF Tandem_Repeat 105042 105086 90 + . . scaffold42490 TRF Tandem_Repeat 108734 108781 96 + . . scaffold42490 GLEAN promoter 123557 124556 0.999661 + . ID=CGI_10007005; scaffold42490 GLEAN mRNA 124557 140409 0.999661 + . ID=CGI_10007005; scaffold42490 TRF Tandem_Repeat 126951 127000 100 + . . scaffold42490 GLEAN mRNA 148806 153033 0.985854 - . ID=CGI_10007006; scaffold42490 GLEAN promoter 153034 154033 0.985854 - . ID=CGI_10007006; scaffold42490 GLEAN mRNA 154584 157739 0.998933 - . ID=CGI_10007007; scaffold42490 GLEAN promoter 157740 158739 0.998933 - . ID=CGI_10007007; scaffold42490 TRF Tandem_Repeat 159683 159718 58 + . . scaffold42490 TRF Tandem_Repeat 163145 163415 114 + . . scaffold42490 TRF Tandem_Repeat 163146 163349 171 + . . scaffold42490 TRF Tandem_Repeat 163148 163350 212 + . . scaffold42490 TRF Tandem_Repeat 163839 164210 238 + . . scaffold42490 TRF Tandem_Repeat 163887 164210 291 + . . scaffold425 TRF Tandem_Repeat 326 372 94 + . . scaffold425 TRF Tandem_Repeat 619 656 76 + . . scaffold425 GLEAN promoter 2342 3341 1 + . ID=CGI_10025973; scaffold425 GLEAN mRNA 3342 5070 1 + . ID=CGI_10025973; scaffold425 TRF Tandem_Repeat 36965 37051 66 + . . scaffold425 TRF Tandem_Repeat 44255 44296 50 + . . scaffold425 WUBlastX LINE_L1-Tx1 55472 55570 24 - . . scaffold425 WUBlastX LINE_CR1 55833 56537 146 - . . scaffold425 TRF Tandem_Repeat 55908 55933 52 + . . scaffold425 WUBlastX LINE_L2 55962 56591 364 - . . scaffold425 WUBlastX LINE_CR1 56560 57678 239 - . . scaffold425 WUBlastX LINE_CR1-L2 56560 57435 452 - . . scaffold425 WUBlastX LINE_L2 56560 57228 567 - . . scaffold425 TRF Tandem_Repeat 57713 57737 50 + . . scaffold425 WUBlastX LINE_L2 58756 60186 114 - . . scaffold425 WUBlastX LINE_L2 58975 60267 585 - . . scaffold425 WUBlastX LINE_L2 61053 61667 171 - . . scaffold425 WUBlastX LINE_L2 61194 61799 65 - . . scaffold425 GLEAN mRNA 64544 65627 1 - . ID=CGI_10025974; scaffold425 GLEAN promoter 65628 66627 1 - . ID=CGI_10025974; scaffold425 WUBlastX LTR_Gypsy-Cigr 66908 67543 219 + . . scaffold425 WUBlastX LTR_Gypsy 67022 67543 333 + . . scaffold425 WUBlastX LTR_Gypsy 67377 68216 493 + . . scaffold425 WUBlastX LTR_Gypsy 67542 68207 507 + . . scaffold425 WUBlastX DNA_TcMar-Pogo 70210 70419 63 - . . scaffold425 WUBlastX DNA_TcMar-Pogo 70228 70404 76 - . . scaffold425 WUBlastX DNA_TcMar-Pogo 70419 70601 36 - . . scaffold425 TRF Tandem_Repeat 81485 81578 170 + . . scaffold425 TRF Tandem_Repeat 82751 82786 56 + . . scaffold425 WUBlastX LINE_CR1-L2 90900 91928 236 + . . scaffold425 WUBlastX LINE_CR1-L2 91922 92161 150 + . . scaffold425 WUBlastX LINE_Jockey 91931 92203 88 + . . scaffold425 WUBlastX LINE_CR1-L2 91931 92092 150 + . . scaffold425 WUBlastX LINE_LOA 92729 92767 21 + . . scaffold425 WUBlastX LINE_CR1-L2 93076 94098 614 + . . scaffold425 WUBlastX LINE_CR1-L2 94110 94466 79 + . . scaffold425 WUBlastX LTR_Ngaro 95575 95784 21 + . . scaffold425 WUBlastX LTR_Ngaro 95783 95971 61 + . . scaffold425 WUBlastX LTR_Ngaro 98603 99019 42 + . . scaffold425 TRF Tandem_Repeat 100897 100970 139 + . . scaffold425 TRF Tandem_Repeat 124797 124828 55 + . . scaffold425 GLEAN mRNA 125655 140260 1 - . ID=CGI_10025975; scaffold425 WUBlastX DNA_IS4EU 126656 126922 40 + . . scaffold425 WUBlastX DNA_IS4EU 127016 127192 57 + . . scaffold425 WUBlastX DNA_IS4EU 127022 127144 66 + . . scaffold425 WUBlastX DNA_IS4EU 127587 128141 199 - . . scaffold425 WUBlastX DNA_Kolobok-IS4 128047 128514 141 - . . scaffold425 WUBlastX DNA_IS4EU 128047 128349 145 - . . scaffold425 WUBlastX DNA_IS4EU 128056 128610 136 - . . scaffold425 WUBlastX DNA_IS4EU 128955 129554 117 + . . scaffold425 WUBlastX DNA_IS4EU 129060 129560 278 + . . scaffold425 WUBlastX DNA_IS4EU 134962 135528 253 + . . scaffold425 WUBlastX DNA_IS4EU 135792 135953 29 + . . scaffold425 WUBlastX DNA_IS4EU 136697 137377 233 + . . scaffold425 WUBlastX DNA_Kolobok-IS4 136709 137503 187 + . . scaffold425 WUBlastX DNA_IS4EU 136712 137749 133 + . . scaffold425 WUBlastX DNA_IS4EU 138118 139476 466 - . . scaffold425 WUBlastX DNA_IS4EU 138124 139272 728 - . . scaffold425 WUBlastX DNA_IS4EU 138970 139623 114 - . . scaffold425 GLEAN promoter 140261 141260 1 - . ID=CGI_10025975; scaffold425 GLEAN promoter 140266 141265 1 + . ID=CGI_10025977; scaffold425 GLEAN promoter 141243 142242 1 + . ID=CGI_10025978; scaffold425 GLEAN mRNA 141266 142085 1 + . ID=CGI_10025977; scaffold425 GLEAN mRNA 142243 142446 1 + . ID=CGI_10025978; scaffold425 WUBlastX DNA_Kolobok 142285 142425 84 + . . scaffold425 WUBlastX DNA_Kolobok 142774 142929 67 - . . scaffold425 GLEAN mRNA 143014 144448 0.999415 - . ID=CGI_10025979; scaffold425 WUBlastX DNA_Kolobok 143017 143190 72 - . . scaffold425 WUBlastX DNA_Kolobok 143282 143530 96 - . . scaffold425 WUBlastX DNA_Kolobok 143333 143536 96 - . . scaffold425 WUBlastX DNA_Kolobok 143448 143831 74 - . . scaffold425 WUBlastX DNA_Kolobok 143646 143834 128 - . . scaffold425 WUBlastX DNA_Kolobok 144020 144703 173 - . . scaffold425 WUBlastX DNA_Kolobok 144023 144937 160 - . . scaffold425 GLEAN promoter 144449 145448 0.999415 - . ID=CGI_10025979; scaffold425 TRF Tandem_Repeat 145208 145232 50 + . . scaffold425 WUBlastX DNA_P 145486 145866 45 - . . scaffold425 WUBlastX DNA_P 145603 145860 73 - . . scaffold425 TRF Tandem_Repeat 160778 160813 72 + . . scaffold425 GLEAN promoter 172408 173407 1 + . ID=CGI_10025980; scaffold425 GLEAN mRNA 173408 173965 1 + . ID=CGI_10025980; scaffold425 WUBlastX LINE_Penelope 178533 178715 56 + . . scaffold425 TRF Tandem_Repeat 178888 178913 52 + . . scaffold425 WUBlastX LINE_Penelope 179275 179508 53 - . . scaffold425 WUBlastX LINE_Penelope 179311 179871 35 - . . scaffold425 WUBlastX LINE_Penelope 179804 180244 109 - . . scaffold425 WUBlastX LINE_Penelope 179873 180394 181 - . . scaffold425 WUBlastX LINE_Penelope 179876 180577 39 - . . scaffold425 WUBlastX LINE_Penelope 179882 180244 234 - . . scaffold425 WUBlastX DNA_TcMar-Fot1 217904 218263 121 - . . scaffold425 WUBlastX DNA_TcMar-Fot1 218124 219089 184 - . . scaffold425 WUBlastX DNA_TcMar-Fot1 218259 218963 244 - . . scaffold425 WUBlastX DNA_TcMar-Fot1 219017 219169 42 - . . scaffold425 GLEAN mRNA 219872 220276 0.998748 - . ID=CGI_10025981; scaffold425 WUBlastX DNA_TcMar-Fot1 219878 220342 90 - . . scaffold425 GLEAN promoter 220277 221276 0.998748 - . ID=CGI_10025981; scaffold425 WUBlastX DNA_IS4EU 221733 222257 36 + . . scaffold425 WUBlastX DNA_IS4EU 221964 222284 38 + . . scaffold425 WUBlastX DNA_IS4EU 223944 224066 49 + . . scaffold425 WUBlastX DNA_IS4EU 223959 224141 36 + . . scaffold425 WUBlastX DNA_IS4EU 223959 224192 29 + . . scaffold425 WUBlastX DNA_Kolobok-IS4 224332 224535 39 + . . scaffold425 WUBlastX DNA_IS4EU 224465 224860 68 + . . scaffold425 WUBlastX DNA_IS4EU 224609 224959 64 + . . scaffold425 WUBlastX DNA_IS4EU 225514 226227 277 - . . scaffold425 WUBlastX DNA_IS4EU 226250 226345 24 - . . scaffold425 WUBlastX DNA_IS4EU 226259 226333 25 - . . scaffold425 TRF Tandem_Repeat 230570 230631 52 + . . scaffold425 WUBlastX DNA_En-Spm 254650 254814 28 + . . scaffold425 WUBlastX DNA_En-Spm 254695 254832 87 + . . scaffold425 WUBlastX DNA_En-Spm 254835 255038 24 + . . scaffold425 WUBlastX DNA_En-Spm 254964 255041 28 + . . scaffold425 WUBlastX DNA_En-Spm 255023 255214 35 + . . scaffold425 WUBlastX DNA_En-Spm 255297 255935 41 + . . scaffold425 WUBlastX DNA_En-Spm 255306 255758 60 + . . scaffold425 WUBlastX DNA_En-Spm 255318 255683 180 + . . scaffold425 TRF Tandem_Repeat 261062 261093 64 + . . scaffold425 GLEAN mRNA 263445 282384 0.64352 - . ID=CGI_10025982; scaffold425 TRF Tandem_Repeat 265276 265317 84 + . . scaffold425 TRF Tandem_Repeat 265561 265690 154 + . . scaffold425 TRF Tandem_Repeat 265561 265690 117 + . . scaffold425 GLEAN promoter 282385 283384 0.64352 - . ID=CGI_10025982; scaffold425 TRF Tandem_Repeat 283359 283410 104 + . . scaffold425 TRF Tandem_Repeat 283730 283754 50 + . . scaffold425 TRF Tandem_Repeat 285034 285068 70 + . . scaffold425 WUBlastX LTR_DIRS 287636 287860 65 - . . scaffold425 WUBlastX LTR_DIRS 287636 287809 92 - . . scaffold425 WUBlastX LTR_DIRS 287836 287919 34 - . . scaffold425 WUBlastX LTR_DIRS 287940 288167 70 - . . scaffold425 WUBlastX LTR_DIRS 288173 288349 84 - . . scaffold425 GLEAN mRNA 295009 296046 1 - . ID=CGI_10025983; scaffold425 GLEAN promoter 296047 297046 1 - . ID=CGI_10025983; scaffold425 TRF Tandem_Repeat 312544 312751 159 + . . scaffold425 WUBlastX DNA_Sola 325693 325962 34 - . . scaffold425 WUBlastX DNA_Sola 325747 325914 51 - . . scaffold425 WUBlastX DNA_Sola 326259 326612 24 - . . scaffold425 WUBlastX DNA_Sola 326514 326612 41 - . . scaffold425 WUBlastX DNA_Sola 326538 326624 54 - . . scaffold425 WUBlastX DNA_Sola 326678 326998 54 - . . scaffold425 TRF Tandem_Repeat 355637 355674 76 + . . scaffold425 TRF Tandem_Repeat 360838 360888 57 + . . scaffold425 GLEAN mRNA 370643 371649 0.999998 - . ID=CGI_10025984; scaffold425 GLEAN promoter 371650 372649 0.999998 - . ID=CGI_10025984; scaffold425 WUBlastX LINE_L2 390223 390918 145 - . . scaffold425 WUBlastX LINE_CR1-L2 390286 391170 144 - . . scaffold425 TRF Tandem_Repeat 406216 406283 120 + . . scaffold425 TRF Tandem_Repeat 414389 414422 59 + . . scaffold425 WUBlastX DNA_hAT-hATw 457191 457703 90 + . . scaffold425 WUBlastX DNA_hAT-hATw 457791 458024 20 + . . scaffold425 WUBlastX DNA_hAT-hATw 458075 458569 35 + . . scaffold425 TRF Tandem_Repeat 460249 460355 137 + . . scaffold425 TRF Tandem_Repeat 460396 460489 109 + . . scaffold425 WUBlastX DNA_IS4EU 462528 462827 44 - . . scaffold425 WUBlastX DNA_IS4EU 462549 462785 156 - . . scaffold425 WUBlastX DNA_IS4EU 462968 463087 23 - . . scaffold425 WUBlastX DNA_Kolobok-IS4 462974 463072 24 - . . scaffold425 WUBlastX DNA_IS4EU 463607 463687 20 - . . scaffold425 WUBlastX DNA_IS4EU 464180 464353 57 - . . scaffold425 TRF Tandem_Repeat 464611 464685 118 + . . scaffold425 WUBlastX LINE_Proto2 465505 465858 30 - . . scaffold425 WUBlastX LINE_RTE-X 465505 465756 130 - . . scaffold425 TRF Tandem_Repeat 466866 466946 153 + . . scaffold425 TRF Tandem_Repeat 467873 468027 204 + . . scaffold425 TRF Tandem_Repeat 468849 469007 163 + . . scaffold425 TRF Tandem_Repeat 468849 469007 163 + . . scaffold425 TRF Tandem_Repeat 471807 471836 51 + . . scaffold425 WUBlastX LINE_L2 483450 483515 20 + . . scaffold425 WUBlastX LINE_RTE-BovB 484015 484239 108 + . . scaffold425 WUBlastX LINE_L2 484220 484747 71 + . . scaffold425 WUBlastX LINE_RTE-BovB 484322 484789 121 + . . scaffold425 WUBlastX LINE_RTE-BovB 484421 484756 131 + . . scaffold425 WUBlastX LINE_RTE-BovB 484472 484774 311 + . . scaffold425 WUBlastX LINE_RTE-BovB 484699 485517 119 + . . scaffold425 WUBlastX LINE_RTE-BovB 484699 485391 348 + . . scaffold425 WUBlastX LINE_RTE-BovB 485405 485560 97 + . . scaffold425 WUBlastX LINE_L1 485695 485742 20 + . . scaffold425 GLEAN mRNA 510364 519174 0.533682 - . ID=CGI_10025986; scaffold425 WUBlastX LINE_L1-Tx1 514841 515119 84 - . . scaffold425 WUBlastX LINE_L1 515134 515391 32 - . . scaffold425 TRF Tandem_Repeat 515852 515948 133 + . . scaffold425 GLEAN promoter 519175 520174 0.533682 - . ID=CGI_10025986; scaffold425 TRF Tandem_Repeat 521118 521164 94 + . . scaffold425 TRF Tandem_Repeat 523538 523584 94 + . . scaffold425 TRF Tandem_Repeat 523666 523695 60 + . . scaffold425 WUBlastX LTR_Gypsy 525303 525827 153 - . . scaffold425 WUBlastX LTR_Gypsy 525513 525887 130 - . . scaffold425 WUBlastX LTR_Gypsy 525513 525800 213 - . . scaffold425 WUBlastX LTR_Gypsy 525543 526010 110 - . . scaffold425 WUBlastX LTR_Gypsy 526733 527221 161 - . . scaffold425 WUBlastX LTR_Gypsy 526838 527224 275 - . . scaffold425 WUBlastX LTR_Gypsy 526856 527314 116 - . . scaffold425 WUBlastX LTR_Gypsy 528302 528523 101 - . . scaffold425 WUBlastX LTR_Gypsy 528341 528643 135 - . . scaffold425 WUBlastX LTR_Gypsy 528642 529361 124 - . . scaffold425 WUBlastX LTR_Gypsy 528909 529976 36 - . . scaffold425 WUBlastX LTR_Gypsy 529059 529505 63 - . . scaffold425 WUBlastX LTR_Gypsy-Cigr 529704 530027 82 - . . scaffold425 WUBlastX LTR_Gypsy-Cigr 530056 530448 38 - . . scaffold425 WUBlastX LINE_L1-Tx1 538534 538602 20 + . . scaffold425 TRF Tandem_Repeat 540103 540250 215 + . . scaffold425 TRF Tandem_Repeat 540763 540910 208 + . . scaffold425 TRF Tandem_Repeat 541525 542154 688 + . . scaffold425 TRF Tandem_Repeat 541525 542154 604 + . . scaffold425 TRF Tandem_Repeat 545539 545580 84 + . . scaffold425 WUBlastX DNA_TcMar-Tc1 547874 548530 323 - . . scaffold425 WUBlastX DNA_TcMar-Tc1 548523 548831 106 - . . scaffold425 WUBlastX DNA_TcMar-Tc1 548646 548903 35 - . . scaffold425 TRF Tandem_Repeat 551766 551837 55 + . . scaffold425 TRF Tandem_Repeat 553367 553420 81 + . . scaffold425 TRF Tandem_Repeat 561481 561555 141 + . . scaffold425 TRF Tandem_Repeat 565163 565207 90 + . . scaffold425 TRF Tandem_Repeat 582097 584456 2438 + . . scaffold425 TRF Tandem_Repeat 596861 596948 113 + . . scaffold425 WUBlastX LINE_L2 597096 597710 86 - . . scaffold425 WUBlastX LINE_L2 597482 598156 166 - . . scaffold425 WUBlastX LINE_L2 597740 598234 251 - . . scaffold425 WUBlastX LINE_L2 597755 598156 253 - . . scaffold425 WUBlastX LINE_L2 598155 598367 167 - . . scaffold425 WUBlastX LINE_L2 598167 598517 65 - . . scaffold425 WUBlastX LINE_L2 598221 598400 77 - . . scaffold425 WUBlastX LINE_Penelope 601640 602020 112 - . . scaffold425 TRF Tandem_Repeat 610391 610424 68 + . . scaffold425 TRF Tandem_Repeat 613385 613412 56 + . . scaffold425 TRF Tandem_Repeat 615118 615241 73 + . . scaffold425 TRF Tandem_Repeat 618783 618826 88 + . . scaffold425 TRF Tandem_Repeat 619681 619765 89 + . . scaffold425 WUBlastX LINE_RTE-BovB 623055 623321 72 - . . scaffold425 WUBlastX LINE_RTE-BovB 623085 623522 59 - . . scaffold425 WUBlastX LINE_RTE-BovB 623392 623907 82 - . . scaffold425 WUBlastX LINE_RTE-BovB 623392 624594 37 - . . scaffold425 WUBlastX LINE_RTE-BovB 623392 624258 59 - . . scaffold425 WUBlastX LINE_RTE-BovB 624523 624726 74 - . . scaffold425 WUBlastX LINE_RTE-BovB 624773 624850 29 - . . scaffold425 WUBlastX LINE_I 626177 626515 21 - . . scaffold425 WUBlastX LINE_RTE-X 626231 627949 694 - . . scaffold425 WUBlastX LINE_L1 627954 628079 50 - . . scaffold425 WUBlastX LINE_RTE-X 627987 629528 284 - . . scaffold425 WUBlastX LINE_L1 629552 630244 136 - . . scaffold425 WUBlastX LINE_L1 629747 630340 26 - . . scaffold425 TRF Tandem_Repeat 631771 631795 50 + . . scaffold425 TRF Tandem_Repeat 646300 646355 112 + . . scaffold425 TRF Tandem_Repeat 660689 660732 63 + . . scaffold425 TRF Tandem_Repeat 660691 660736 69 + . . scaffold425 WUBlastX LTR_Ngaro 677515 677730 59 + . . scaffold425 WUBlastX LTR_Ngaro 677521 677778 52 + . . scaffold425 WUBlastX LTR_Ngaro 677805 678110 60 + . . scaffold425 TRF Tandem_Repeat 683639 683722 87 + . . scaffold425 TRF Tandem_Repeat 683648 683716 75 + . . scaffold425 TRF Tandem_Repeat 684054 684103 100 + . . scaffold425 TRF Tandem_Repeat 708465 708571 142 + . . scaffold425 TRF Tandem_Repeat 710100 710190 146 + . . scaffold425 GLEAN mRNA 717128 718244 0.840332 - . ID=CGI_10025987; scaffold425 GLEAN promoter 718245 719244 0.840332 - . ID=CGI_10025987; scaffold425 TRF Tandem_Repeat 718250 718821 793 + . . scaffold425 TRF Tandem_Repeat 718323 718773 134 + . . scaffold425 GLEAN promoter 735083 736082 0.890669 + . ID=CGI_10025988; scaffold425 GLEAN mRNA 736083 753551 0.890669 + . ID=CGI_10025988; scaffold425 TRF Tandem_Repeat 738169 738211 56 + . . scaffold425 TRF Tandem_Repeat 738384 739038 869 + . . scaffold425 TRF Tandem_Repeat 742949 743006 98 + . . scaffold425 TRF Tandem_Repeat 745609 746198 459 + . . scaffold425 TRF Tandem_Repeat 745609 746195 518 + . . scaffold425 GLEAN mRNA 755274 756515 0.999642 - . ID=CGI_10025989; scaffold425 GLEAN promoter 756516 757515 0.999642 - . ID=CGI_10025989; scaffold425 GLEAN mRNA 760575 767163 1 - . ID=CGI_10025990; scaffold425 GLEAN promoter 767164 768163 1 - . ID=CGI_10025990; scaffold425 WUBlastX LINE_L1-Tx1 767860 768069 92 - . . scaffold425 TRF Tandem_Repeat 770278 770370 134 + . . scaffold425 TRF Tandem_Repeat 770859 770938 101 + . . scaffold425 TRF Tandem_Repeat 770859 770935 79 + . . scaffold425 GLEAN mRNA 774209 774712 0.618241 - . ID=CGI_10025991; scaffold425 GLEAN promoter 774713 775712 0.618241 - . ID=CGI_10025991; scaffold425 GLEAN mRNA 774938 786192 0.54737 - . ID=CGI_10025992; scaffold425 GLEAN promoter 776386 777385 0.942772 + . ID=CGI_10025993; scaffold425 GLEAN mRNA 777386 780033 0.942772 + . ID=CGI_10025993; scaffold425 TRF Tandem_Repeat 784438 784665 348 + . . scaffold425 GLEAN promoter 786090 787089 1 + . ID=CGI_10025994; scaffold425 GLEAN promoter 786193 787192 0.54737 - . ID=CGI_10025992; scaffold425 GLEAN mRNA 787090 793211 1 + . ID=CGI_10025994; scaffold425 TRF Tandem_Repeat 795458 795521 128 + . . scaffold425 GLEAN promoter 795767 796766 1 + . ID=CGI_10025995; scaffold425 TRF Tandem_Repeat 796397 796457 122 + . . scaffold425 GLEAN mRNA 796767 803998 1 + . ID=CGI_10025995; scaffold425 GLEAN mRNA 810081 813435 1 - . ID=CGI_10025996; scaffold425 GLEAN promoter 813436 814435 1 - . ID=CGI_10025996; scaffold425 TRF Tandem_Repeat 816853 816987 98 + . . scaffold425 TRF Tandem_Repeat 816871 817001 112 + . . scaffold425 WUBlastX LINE_RTE-X 818135 818362 30 - . . scaffold425 GLEAN promoter 823311 824310 0.997886 + . ID=CGI_10025997; scaffold425 GLEAN mRNA 824311 833773 0.997886 + . ID=CGI_10025997; scaffold425 TRF Tandem_Repeat 832357 832407 57 + . . scaffold425 TRF Tandem_Repeat 838511 838750 471 + . . scaffold425 GLEAN promoter 850056 851055 0.991247 + . ID=CGI_10025998; scaffold425 GLEAN mRNA 851056 852270 0.991247 + . ID=CGI_10025998; scaffold425 TRF Tandem_Repeat 853098 853139 84 + . . scaffold425 GLEAN promoter 855303 856302 0.999538 + . ID=CGI_10025999; scaffold425 GLEAN mRNA 856303 861326 0.999538 + . ID=CGI_10025999; scaffold425 TRF Tandem_Repeat 859246 859383 172 + . . scaffold425 TRF Tandem_Repeat 859567 859709 94 + . . scaffold425 GLEAN mRNA 863843 873038 0.456872 - . ID=CGI_10026000; scaffold425 TRF Tandem_Repeat 867597 867704 147 + . . scaffold425 TRF Tandem_Repeat 867604 867706 98 + . . scaffold425 TRF Tandem_Repeat 868623 868684 124 + . . scaffold425 GLEAN promoter 873039 874038 0.456872 - . ID=CGI_10026000; scaffold425 GLEAN mRNA 875549 891141 0.998943 - . ID=CGI_10026001; scaffold425 GLEAN promoter 891142 892141 0.998943 - . ID=CGI_10026001; scaffold425 TRF Tandem_Repeat 891755 891792 76 + . . scaffold425 TRF Tandem_Repeat 892388 892427 80 + . . scaffold425 TRF Tandem_Repeat 893018 893060 86 + . . scaffold425 GLEAN promoter 893738 894737 0.89364 + . ID=CGI_10026002; scaffold425 GLEAN mRNA 894738 904336 0.89364 + . ID=CGI_10026002; scaffold425 TRF Tandem_Repeat 906620 906666 58 + . . scaffold425 TRF Tandem_Repeat 906621 906666 65 + . . scaffold425 GLEAN promoter 908108 909107 1 + . ID=CGI_10026003; scaffold425 GLEAN mRNA 909108 921259 1 + . ID=CGI_10026003; scaffold425 TRF Tandem_Repeat 915509 915544 63 + . . scaffold425 GLEAN mRNA 922699 925448 1 - . ID=CGI_10026004; scaffold425 GLEAN promoter 925449 926448 1 - . ID=CGI_10026004; scaffold425 GLEAN promoter 925608 926607 0.991247 + . ID=CGI_10026005; scaffold425 GLEAN mRNA 926608 934748 0.991247 + . ID=CGI_10026005; scaffold425 TRF Tandem_Repeat 933097 933451 327 + . . scaffold425 TRF Tandem_Repeat 933105 933500 389 + . . scaffold425 GLEAN mRNA 939178 942093 1 - . ID=CGI_10026006; scaffold425 TRF Tandem_Repeat 939553 939596 54 + . . scaffold425 GLEAN promoter 942094 943093 1 - . ID=CGI_10026006; scaffold425 TRF Tandem_Repeat 942183 942271 137 + . . scaffold425 TRF Tandem_Repeat 942318 942411 125 + . . scaffold425 TRF Tandem_Repeat 942988 943235 148 + . . scaffold425 TRF Tandem_Repeat 943059 943205 149 + . . scaffold425 TRF Tandem_Repeat 944287 944684 296 + . . scaffold425 TRF Tandem_Repeat 944298 944672 129 + . . scaffold425 GLEAN promoter 950006 951005 1 + . ID=CGI_10026007; scaffold425 GLEAN mRNA 951006 952394 1 + . ID=CGI_10026007; scaffold425 GLEAN mRNA 955381 969011 0.789156 - . ID=CGI_10026008; scaffold425 TRF Tandem_Repeat 961222 961275 99 + . . scaffold425 GLEAN promoter 969012 970011 0.789156 - . ID=CGI_10026008; scaffold425 GLEAN promoter 969808 970807 1 + . ID=CGI_10026009; scaffold425 GLEAN mRNA 970808 974483 1 + . ID=CGI_10026009; scaffold425 GLEAN mRNA 975262 997571 0.991599 - . ID=CGI_10026010; scaffold425 TRF Tandem_Repeat 984989 985137 97 + . . scaffold425 TRF Tandem_Repeat 985053 985199 73 + . . scaffold425 TRF Tandem_Repeat 986164 986937 696 + . . scaffold425 TRF Tandem_Repeat 986983 987020 60 + . . scaffold425 GLEAN promoter 997572 998571 0.991599 - . ID=CGI_10026010; scaffold425 GLEAN mRNA 997658 1029515 0.993112 - . ID=CGI_10026011; scaffold425 TRF Tandem_Repeat 999893 999938 92 + . . scaffold425 TRF Tandem_Repeat 1013114 1013310 263 + . . scaffold425 WUBlastX LTR_Gypsy 1023842 1023967 42 - . . scaffold425 WUBlastX LTR_Gypsy 1023848 1024009 38 - . . scaffold425 WUBlastX LTR_Gypsy 1024651 1024830 49 - . . scaffold425 GLEAN promoter 1029516 1030515 0.993112 - . ID=CGI_10026011; scaffold425 GLEAN promoter 1033648 1034647 1 + . ID=CGI_10026012; scaffold425 GLEAN mRNA 1034648 1038510 1 + . ID=CGI_10026012; scaffold425 GLEAN promoter 1038063 1039062 0.499838 + . ID=CGI_10026014; scaffold425 GLEAN mRNA 1038466 1039865 0.999977 - . ID=CGI_10026013; scaffold425 GLEAN mRNA 1039063 1050517 0.499838 + . ID=CGI_10026014; scaffold425 GLEAN promoter 1039866 1040865 0.999977 - . ID=CGI_10026013; scaffold425 GLEAN mRNA 1040162 1048747 1 - . ID=CGI_10026015; scaffold425 TRF Tandem_Repeat 1041842 1041878 74 + . . scaffold425 TRF Tandem_Repeat 1045153 1045302 223 + . . scaffold425 GLEAN promoter 1048748 1049747 1 - . ID=CGI_10026015; scaffold425 GLEAN mRNA 1053072 1053991 0.997818 - . ID=CGI_10026016; scaffold425 GLEAN promoter 1053992 1054991 0.997818 - . ID=CGI_10026016; scaffold425 TRF Tandem_Repeat 1056737 1056810 148 + . . scaffold425 TRF Tandem_Repeat 1063782 1063811 60 + . . scaffold425 TRF Tandem_Repeat 1064827 1064853 54 + . . scaffold425 TRF Tandem_Repeat 1064868 1064917 100 + . . scaffold425 WUBlastX LINE_RTE-X 1065821 1066168 50 + . . scaffold425 TRF Tandem_Repeat 1068968 1070109 1390 + . . scaffold425 TRF Tandem_Repeat 1068968 1069855 1145 + . . scaffold425 GLEAN promoter 1069688 1070687 0.999997 + . ID=CGI_10026017; scaffold425 TRF Tandem_Repeat 1069856 1070109 343 + . . scaffold425 GLEAN mRNA 1070688 1074727 0.999997 + . ID=CGI_10026017; scaffold425 TRF Tandem_Repeat 1071094 1071157 119 + . . scaffold425 TRF Tandem_Repeat 1074786 1074824 55 + . . scaffold425 TRF Tandem_Repeat 1075283 1075570 558 + . . scaffold425 TRF Tandem_Repeat 1078105 1078182 52 + . . scaffold425 WUBlastX LINE_L2 1079786 1079854 31 + . . scaffold425 GLEAN promoter 1081380 1082379 1 + . ID=CGI_10026018; scaffold425 GLEAN mRNA 1082380 1085043 1 + . ID=CGI_10026018; scaffold425 TRF Tandem_Repeat 1086575 1086630 112 + . . scaffold425 WUBlastX LINE_RTE-X 1097735 1099693 900 + . . scaffold425 GLEAN mRNA 1103422 1106462 0.460347 - . ID=CGI_10026019; scaffold425 GLEAN promoter 1106463 1107462 0.460347 - . ID=CGI_10026019; scaffold425 GLEAN promoter 1106841 1107840 1 + . ID=CGI_10026020; scaffold425 GLEAN mRNA 1107841 1114378 1 + . ID=CGI_10026020; scaffold425 TRF Tandem_Repeat 1114176 1114207 64 + . . scaffold425 TRF Tandem_Repeat 1116594 1116648 110 + . . scaffold42508 GLEAN mRNA 2602 25669 1 - . ID=CGI_10007022; scaffold42508 TRF Tandem_Repeat 16738 16797 120 + . . scaffold42508 GLEAN promoter 25670 26669 1 - . ID=CGI_10007022; scaffold42508 TRF Tandem_Repeat 31028 31064 56 + . . scaffold42508 TRF Tandem_Repeat 31029 31094 60 + . . scaffold42508 TRF Tandem_Repeat 31029 31077 62 + . . scaffold42508 TRF Tandem_Repeat 31507 31558 104 + . . scaffold42508 GLEAN mRNA 42995 43871 1 - . ID=CGI_10007023; scaffold42508 GLEAN promoter 43872 44871 1 - . ID=CGI_10007023; scaffold42508 GLEAN mRNA 43884 44093 0.999372 - . ID=CGI_10007024; scaffold42508 GLEAN promoter 44094 45093 0.999372 - . ID=CGI_10007024; scaffold42508 GLEAN promoter 46765 47764 0.618186 + . ID=CGI_10007025; scaffold42508 GLEAN mRNA 47765 47980 0.618186 + . ID=CGI_10007025; scaffold42508 TRF Tandem_Repeat 52888 52945 107 + . . scaffold42508 GLEAN mRNA 53501 57856 0.924244 - . ID=CGI_10007026; scaffold42508 TRF Tandem_Repeat 55308 56509 1839 + . . scaffold42508 GLEAN promoter 57857 58856 0.924244 - . ID=CGI_10007026; scaffold42508 TRF Tandem_Repeat 61822 61887 132 + . . scaffold42508 GLEAN promoter 65159 66158 0.999922 + . ID=CGI_10007027; scaffold42508 GLEAN mRNA 66159 76153 0.999922 + . ID=CGI_10007027; scaffold42508 TRF Tandem_Repeat 68988 69043 112 + . . scaffold42508 TRF Tandem_Repeat 73201 73250 100 + . . scaffold42508 TRF Tandem_Repeat 83843 83877 70 + . . scaffold42508 GLEAN mRNA 85611 85820 0.999372 - . ID=CGI_10007028; scaffold42508 GLEAN promoter 85821 86820 0.999372 - . ID=CGI_10007028; scaffold42508 GLEAN mRNA 89634 95885 1 - . ID=CGI_10007029; scaffold42508 GLEAN promoter 95886 96885 1 - . ID=CGI_10007029; scaffold42508 GLEAN mRNA 103288 107098 0.993544 - . ID=CGI_10007030; scaffold42508 TRF Tandem_Repeat 104764 104837 148 + . . scaffold42508 GLEAN promoter 106597 107596 0.61441 + . ID=CGI_10007031; scaffold42508 GLEAN promoter 107099 108098 0.993544 - . ID=CGI_10007030; scaffold42508 GLEAN mRNA 107597 125210 0.61441 + . ID=CGI_10007031; scaffold42508 GLEAN mRNA 127349 128545 0.987396 - . ID=CGI_10007032; scaffold42508 GLEAN promoter 128546 129545 0.987396 - . ID=CGI_10007032; scaffold42508 GLEAN mRNA 132335 147112 0.99201 - . ID=CGI_10007033; scaffold42508 WUBlastX LTR_Copia 134329 134508 87 + . . scaffold42508 WUBlastX LTR_Copia 135483 135812 169 + . . scaffold42508 GLEAN promoter 147113 148112 0.99201 - . ID=CGI_10007033; scaffold42508 WUBlastX LINE_RTE-X 149165 149401 24 - . . scaffold42508 WUBlastX LINE_RTE-X 149222 149401 26 - . . scaffold42508 WUBlastX LINE_RTE-X 149766 149867 56 - . . scaffold42508 TRF Tandem_Repeat 150884 150913 60 + . . scaffold42508 GLEAN promoter 151558 152557 0.176732 + . ID=CGI_10007034; scaffold42508 GLEAN mRNA 152558 160314 0.176732 + . ID=CGI_10007034; scaffold42508 TRF Tandem_Repeat 152905 152980 152 + . . scaffold42508 TRF Tandem_Repeat 154197 154309 111 + . . scaffold42508 GLEAN promoter 162132 163131 0.984115 + . ID=CGI_10007035; scaffold42508 GLEAN mRNA 163132 165123 0.984115 + . ID=CGI_10007035; scaffold42516 GLEAN mRNA 3166 6610 1 - . ID=CGI_10007100; scaffold42516 GLEAN promoter 5972 6971 0.649911 + . ID=CGI_10007101; scaffold42516 GLEAN promoter 6611 7610 1 - . ID=CGI_10007100; scaffold42516 GLEAN mRNA 6972 10498 0.649911 + . ID=CGI_10007101; scaffold42516 GLEAN mRNA 12597 13832 0.734544 - . ID=CGI_10007102; scaffold42516 GLEAN promoter 13833 14832 0.734544 - . ID=CGI_10007102; scaffold42516 GLEAN promoter 14536 15535 0.649911 + . ID=CGI_10007103; scaffold42516 GLEAN mRNA 15536 26274 0.649911 + . ID=CGI_10007103; scaffold42516 TRF Tandem_Repeat 17654 17686 66 + . . scaffold42516 GLEAN mRNA 34846 44955 0.651135 - . ID=CGI_10007104; scaffold42516 GLEAN promoter 44956 45955 0.651135 - . ID=CGI_10007104; scaffold42516 GLEAN mRNA 45019 56581 1 - . ID=CGI_10007105; scaffold42516 GLEAN promoter 56442 57441 0.630778 + . ID=CGI_10007106; scaffold42516 GLEAN promoter 56582 57581 1 - . ID=CGI_10007105; scaffold42516 GLEAN mRNA 57442 60214 0.630778 + . ID=CGI_10007106; scaffold42516 WUBlastX LINE_RTE-X 61646 61717 24 + . . scaffold42516 WUBlastX LINE_RTE-X 61649 61744 23 + . . scaffold42516 WUBlastX LINE_RTE-X 61740 61931 39 + . . scaffold42516 GLEAN mRNA 66087 74671 0.495617 - . ID=CGI_10007107; scaffold42516 WUBlastX DNA_hAT 71914 72471 236 - . . scaffold42516 GLEAN promoter 74672 75671 0.495617 - . ID=CGI_10007107; scaffold42516 GLEAN mRNA 84849 85526 0.777732 - . ID=CGI_10007108; scaffold42516 GLEAN promoter 85026 86025 1 + . ID=CGI_10007109; scaffold42516 GLEAN promoter 85527 86526 0.777732 - . ID=CGI_10007108; scaffold42516 GLEAN mRNA 86026 103462 1 + . ID=CGI_10007109; scaffold42516 TRF Tandem_Repeat 89148 89185 76 + . . scaffold42516 TRF Tandem_Repeat 100559 101478 1373 + . . scaffold42516 GLEAN mRNA 105355 109717 0.402669 - . ID=CGI_10007110; scaffold42516 GLEAN promoter 109718 110717 0.402669 - . ID=CGI_10007110; scaffold42516 GLEAN promoter 116585 117584 1 + . ID=CGI_10007111; scaffold42516 GLEAN mRNA 117585 119054 1 + . ID=CGI_10007111; scaffold42516 GLEAN promoter 118874 119873 0.981254 + . ID=CGI_10007112; scaffold42516 GLEAN mRNA 119874 143492 0.981254 + . ID=CGI_10007112; scaffold42516 TRF Tandem_Repeat 130024 130388 447 + . . scaffold42516 TRF Tandem_Repeat 131979 132290 404 + . . scaffold42516 GLEAN promoter 146087 147086 1 + . ID=CGI_10007113; scaffold42516 GLEAN mRNA 147087 149834 1 + . ID=CGI_10007113; scaffold42516 GLEAN promoter 151465 152464 1 + . ID=CGI_10007114; scaffold42516 GLEAN mRNA 152465 161629 1 + . ID=CGI_10007114; scaffold42516 TRF Tandem_Repeat 161781 161819 69 + . . scaffold42516 GLEAN promoter 162328 163327 0.593383 + . ID=CGI_10007115; scaffold42516 GLEAN mRNA 163328 164956 0.593383 + . ID=CGI_10007115; scaffold42516 TRF Tandem_Repeat 170455 171143 1193 + . . scaffold42516 TRF Tandem_Repeat 171148 171181 50 + . . scaffold42516 TRF Tandem_Repeat 171151 171194 70 + . . scaffold42518 GLEAN mRNA 11088 28468 0.499475 - . ID=CGI_10007065; scaffold42518 GLEAN promoter 15294 16293 1 + . ID=CGI_10007066; scaffold42518 GLEAN mRNA 16294 16728 1 + . ID=CGI_10007066; scaffold42518 GLEAN promoter 28151 29150 1 + . ID=CGI_10007067; scaffold42518 GLEAN promoter 28469 29468 0.499475 - . ID=CGI_10007065; scaffold42518 GLEAN mRNA 29151 31578 1 + . ID=CGI_10007067; scaffold42518 GLEAN promoter 33786 34785 1 + . ID=CGI_10007068; scaffold42518 GLEAN mRNA 34786 36376 1 + . ID=CGI_10007068; scaffold42518 GLEAN mRNA 37071 50228 0.996732 - . ID=CGI_10007069; scaffold42518 GLEAN promoter 50229 51228 0.996732 - . ID=CGI_10007069; scaffold42518 GLEAN promoter 56303 57302 0.999999 + . ID=CGI_10007070; scaffold42518 GLEAN mRNA 57303 69423 0.999999 + . ID=CGI_10007070; scaffold42518 GLEAN promoter 74998 75997 0.493864 + . ID=CGI_10007071; scaffold42518 GLEAN mRNA 75998 102014 0.493864 + . ID=CGI_10007071; scaffold42518 GLEAN mRNA 101929 115282 0.999345 - . ID=CGI_10007072; scaffold42518 GLEAN promoter 114580 115579 0.290934 + . ID=CGI_10007073; scaffold42518 GLEAN promoter 115283 116282 0.999345 - . ID=CGI_10007072; scaffold42518 GLEAN mRNA 115580 128742 0.290934 + . ID=CGI_10007073; scaffold42518 GLEAN promoter 127889 128888 0.557677 + . ID=CGI_10007074; scaffold42518 GLEAN mRNA 128889 137961 0.557677 + . ID=CGI_10007074; scaffold42518 GLEAN mRNA 140067 144087 1 - . ID=CGI_10007075; scaffold42518 GLEAN promoter 144088 145087 1 - . ID=CGI_10007075; scaffold42518 GLEAN promoter 145204 146203 1 + . ID=CGI_10007076; scaffold42518 GLEAN mRNA 146204 153399 1 + . ID=CGI_10007076; scaffold42518 GLEAN mRNA 154008 156045 0.523677 - . ID=CGI_10007077; scaffold42518 GLEAN promoter 156046 157045 0.523677 - . ID=CGI_10007077; scaffold42518 GLEAN mRNA 156067 160508 0.523677 - . ID=CGI_10007078; scaffold42518 GLEAN promoter 160509 161508 0.523677 - . ID=CGI_10007078; scaffold42518 GLEAN promoter 160978 161977 1 + . ID=CGI_10007079; scaffold42518 GLEAN mRNA 161978 162517 1 + . ID=CGI_10007079; scaffold42518 GLEAN promoter 166651 167650 1 + . ID=CGI_10007080; scaffold42518 GLEAN mRNA 167651 167926 1 + . ID=CGI_10007080; scaffold42524 GLEAN promoter 239 1238 1 + . ID=CGI_10007090; scaffold42524 GLEAN mRNA 1239 5293 1 + . ID=CGI_10007090; scaffold42524 GLEAN promoter 4556 5555 1 + . ID=CGI_10007091; scaffold42524 GLEAN mRNA 5556 11998 1 + . ID=CGI_10007091; scaffold42524 GLEAN promoter 12564 13563 1 + . ID=CGI_10007092; scaffold42524 GLEAN mRNA 13564 15334 1 + . ID=CGI_10007092; scaffold42524 GLEAN mRNA 18209 32426 0.333261 - . ID=CGI_10007093; scaffold42524 GLEAN promoter 21506 22505 0.916564 + . ID=CGI_10007094; scaffold42524 GLEAN mRNA 22506 31845 0.916564 + . ID=CGI_10007094; scaffold42524 GLEAN promoter 32427 33426 0.333261 - . ID=CGI_10007093; scaffold42524 GLEAN mRNA 41927 46884 1 - . ID=CGI_10007095; scaffold42524 GLEAN promoter 46885 47884 1 - . ID=CGI_10007095; scaffold42524 GLEAN mRNA 53630 108683 0.979843 - . ID=CGI_10007096; scaffold42524 GLEAN promoter 108684 109683 0.979843 - . ID=CGI_10007096; scaffold42528 TRF Tandem_Repeat 2037 2086 100 + . . scaffold42528 GLEAN mRNA 26531 46609 0.862454 - . ID=CGI_10007205; scaffold42528 TRF Tandem_Repeat 42174 42267 57 + . . scaffold42528 GLEAN promoter 46610 47609 0.862454 - . ID=CGI_10007205; scaffold42528 GLEAN mRNA 55638 59065 1 - . ID=CGI_10007206; scaffold42528 GLEAN promoter 59066 60065 1 - . ID=CGI_10007206; scaffold42528 GLEAN promoter 76609 77608 0.825842 + . ID=CGI_10007207; scaffold42528 GLEAN mRNA 77609 81251 0.825842 + . ID=CGI_10007207; scaffold42528 TRF Tandem_Repeat 88691 88736 92 + . . scaffold42528 TRF Tandem_Repeat 91309 91377 131 + . . scaffold42528 GLEAN promoter 92439 93438 0.99623 + . ID=CGI_10007208; scaffold42528 GLEAN mRNA 93439 101126 0.99623 + . ID=CGI_10007208; scaffold42528 GLEAN mRNA 99418 143145 0.451859 - . ID=CGI_10007209; scaffold42528 WUBlastX LINE_CR1-L2 132544 133080 67 - . . scaffold42528 WUBlastX LINE_CR1-L2 132697 133080 112 - . . scaffold42528 WUBlastX LINE_CR1-L2 132706 133209 55 - . . scaffold42528 GLEAN promoter 135401 136400 0.889923 + . ID=CGI_10007210; scaffold42528 GLEAN mRNA 136401 146936 0.889923 + . ID=CGI_10007210; scaffold42528 GLEAN promoter 143146 144145 0.451859 - . ID=CGI_10007209; scaffold42528 WUBlastX LTR_ERV1 144171 144251 44 + . . scaffold42528 WUBlastX LTR_ERV1 144177 144242 54 + . . scaffold42528 WUBlastX LTR_ERV1 144407 144577 26 + . . scaffold42528 WUBlastX LTR_Copia 144410 144526 49 + . . scaffold42528 GLEAN mRNA 149933 152184 0.84036 - . ID=CGI_10007211; scaffold42528 GLEAN promoter 152185 153184 0.84036 - . ID=CGI_10007211; scaffold42528 GLEAN promoter 156759 157758 0.989219 + . ID=CGI_10007212; scaffold42528 GLEAN mRNA 157759 163582 0.989219 + . ID=CGI_10007212; scaffold42528 TRF Tandem_Repeat 162442 162530 90 + . . scaffold42528 GLEAN promoter 164522 165521 0.734569 + . ID=CGI_10007213; scaffold42528 GLEAN mRNA 165522 168292 0.734569 + . ID=CGI_10007213; scaffold42528 TRF Tandem_Repeat 166787 166915 80 + . . scaffold42528 TRF Tandem_Repeat 166950 167135 194 + . . scaffold42528 TRF Tandem_Repeat 166992 167135 164 + . . scaffold42530 TRF Tandem_Repeat 788 874 104 + . . scaffold42530 TRF Tandem_Repeat 959 1149 161 + . . scaffold42530 TRF Tandem_Repeat 961 1149 243 + . . scaffold42530 GLEAN mRNA 3823 4380 0.999661 - . ID=CGI_10007157; scaffold42530 GLEAN promoter 4381 5380 0.999661 - . ID=CGI_10007157; scaffold42530 TRF Tandem_Repeat 10131 10275 224 + . . scaffold42530 GLEAN mRNA 11870 22719 0.832603 - . ID=CGI_10007158; scaffold42530 TRF Tandem_Repeat 20207 20246 71 + . . scaffold42530 GLEAN promoter 22720 23719 0.832603 - . ID=CGI_10007158; scaffold42530 TRF Tandem_Repeat 23796 23832 74 + . . scaffold42530 GLEAN promoter 25883 26882 0.811719 + . ID=CGI_10007159; scaffold42530 TRF Tandem_Repeat 26152 26199 96 + . . scaffold42530 GLEAN mRNA 26883 29044 0.811719 + . ID=CGI_10007159; scaffold42530 WUBlastX LINE_L2 30832 30966 28 - . . scaffold42530 WUBlastX LINE_L2 31107 31568 42 - . . scaffold42530 WUBlastX LTR_Pao 35530 35643 32 - . . scaffold42530 WUBlastX LTR_Pao 35548 35652 56 - . . scaffold42530 WUBlastX LTR_Pao 35613 35897 22 - . . scaffold42530 WUBlastX LTR_Pao 35628 35837 50 - . . scaffold42530 WUBlastX LTR_Pao 35944 36405 225 - . . scaffold42530 WUBlastX LTR_Pao 36043 36483 120 - . . scaffold42530 WUBlastX LTR_Pao 36363 36647 87 - . . scaffold42530 WUBlastX LTR_Pao 36577 36813 208 - . . scaffold42530 WUBlastX LTR_Pao 36812 37531 563 - . . scaffold42530 WUBlastX LTR_Pao 36812 37678 312 - . . scaffold42530 WUBlastX LTR_Pao 37539 37721 178 - . . scaffold42530 WUBlastX LTR_Pao 38150 38344 29 - . . scaffold42530 WUBlastX LTR_Pao 38201 38320 51 - . . scaffold42530 WUBlastX LTR_Pao 38225 38320 58 - . . scaffold42530 WUBlastX LTR_Pao 38262 39281 560 - . . scaffold42530 WUBlastX LTR_Pao 39257 39568 113 - . . scaffold42530 WUBlastX LTR_Pao 39329 40321 441 - . . scaffold42530 WUBlastX LTR_Pao 39353 40174 479 - . . scaffold42530 GLEAN mRNA 40747 41325 0.518164 - . ID=CGI_10007160; scaffold42530 WUBlastX LTR_Pao 40786 40956 37 - . . scaffold42530 GLEAN promoter 41326 42325 0.518164 - . ID=CGI_10007160; scaffold42530 GLEAN promoter 43450 44449 0.966018 + . ID=CGI_10007161; scaffold42530 GLEAN mRNA 44450 55395 0.966018 + . ID=CGI_10007161; scaffold42530 WUBlastX LINE_L2 46387 46458 27 + . . scaffold42530 WUBlastX LINE_L2 46393 46533 22 + . . scaffold42530 WUBlastX LINE_L2 46545 47180 153 + . . scaffold42530 WUBlastX LINE_L2 46647 47783 426 + . . scaffold42530 WUBlastX LINE_L2 47785 47979 86 + . . scaffold42530 TRF Tandem_Repeat 48526 48564 78 + . . scaffold42530 WUBlastX LINE_Penelope 60369 60704 26 + . . scaffold42530 GLEAN mRNA 61830 65493 0.949691 - . ID=CGI_10007162; scaffold42530 GLEAN promoter 65494 66493 0.949691 - . ID=CGI_10007162; scaffold42530 TRF Tandem_Repeat 73343 73681 606 + . . scaffold42530 TRF Tandem_Repeat 74591 74982 316 + . . scaffold42530 TRF Tandem_Repeat 76843 76909 134 + . . scaffold42530 WUBlastX DNA_hAT-Tip100 87230 87361 76 + . . scaffold42530 TRF Tandem_Repeat 92986 93911 1186 + . . scaffold42530 WUBlastX LTR_DIRS 110014 110103 25 - . . scaffold42530 WUBlastX LTR_DIRS 110679 110984 54 - . . scaffold42530 WUBlastX LTR_DIRS 110992 111168 80 - . . scaffold42530 WUBlastX DNA_TcMar-Tc1 111499 111930 234 - . . scaffold42530 WUBlastX DNA_TcMar-Tc1 111604 112053 32 - . . scaffold42530 TRF Tandem_Repeat 119415 119522 189 + . . scaffold42530 GLEAN promoter 119502 120501 0.841089 + . ID=CGI_10007164; scaffold42530 GLEAN mRNA 120502 136136 0.841089 + . ID=CGI_10007164; scaffold42530 TRF Tandem_Repeat 140009 140041 66 + . . scaffold42530 GLEAN mRNA 141960 148536 0.62179 - . ID=CGI_10007165; scaffold42530 GLEAN promoter 148537 149536 0.62179 - . ID=CGI_10007165; scaffold42530 GLEAN mRNA 148910 150802 0.480472 - . ID=CGI_10007166; scaffold42530 GLEAN promoter 150803 151802 0.480472 - . ID=CGI_10007166; scaffold42530 GLEAN mRNA 155883 162548 1 - . ID=CGI_10007167; scaffold42530 TRF Tandem_Repeat 156852 156985 89 + . . scaffold42530 GLEAN promoter 162549 163548 1 - . ID=CGI_10007167; scaffold42530 GLEAN mRNA 163344 168122 1 - . ID=CGI_10007168; scaffold42530 TRF Tandem_Repeat 166227 166286 120 + . . scaffold42530 GLEAN promoter 168123 169122 1 - . ID=CGI_10007168; scaffold42540 GLEAN promoter 3636 4635 1 + . ID=CGI_10007125; scaffold42540 GLEAN mRNA 4636 7927 1 + . ID=CGI_10007125; scaffold42540 GLEAN promoter 10024 11023 1 + . ID=CGI_10007126; scaffold42540 GLEAN mRNA 11024 17877 1 + . ID=CGI_10007126; scaffold42540 GLEAN mRNA 21397 23931 1 - . ID=CGI_10007127; scaffold42540 GLEAN promoter 23932 24931 1 - . ID=CGI_10007127; scaffold42540 GLEAN promoter 25043 26042 1 + . ID=CGI_10007128; scaffold42540 GLEAN mRNA 26043 33190 1 + . ID=CGI_10007128; scaffold42540 GLEAN promoter 34114 35113 0.993765 + . ID=CGI_10007129; scaffold42540 GLEAN mRNA 35114 45492 0.993765 + . ID=CGI_10007129; scaffold42540 GLEAN mRNA 45761 56492 1 - . ID=CGI_10007130; scaffold42540 GLEAN promoter 54276 55275 0.83601 + . ID=CGI_10007131; scaffold42540 GLEAN mRNA 55276 59611 0.83601 + . ID=CGI_10007131; scaffold42540 GLEAN promoter 56493 57492 1 - . ID=CGI_10007130; scaffold42540 GLEAN promoter 63814 64813 0.999787 + . ID=CGI_10007132; scaffold42540 GLEAN mRNA 64814 70217 0.999787 + . ID=CGI_10007132; scaffold42540 GLEAN mRNA 72802 76802 0.999949 - . ID=CGI_10007133; scaffold42540 GLEAN promoter 75102 76101 1 + . ID=CGI_10007134; scaffold42540 GLEAN mRNA 76102 80286 1 + . ID=CGI_10007134; scaffold42540 GLEAN promoter 76803 77802 0.999949 - . ID=CGI_10007133; scaffold42540 GLEAN mRNA 84936 85301 1 - . ID=CGI_10007135; scaffold42540 GLEAN promoter 85302 86301 1 - . ID=CGI_10007135; scaffold42540 GLEAN promoter 85463 86462 0.616054 + . ID=CGI_10007136; scaffold42540 GLEAN mRNA 86463 98452 0.616054 + . ID=CGI_10007136; scaffold42540 GLEAN mRNA 100425 101333 0.999861 - . ID=CGI_10007137; scaffold42540 GLEAN promoter 101334 102333 0.999861 - . ID=CGI_10007137; scaffold42540 GLEAN promoter 107199 108198 0.642934 + . ID=CGI_10007138; scaffold42540 GLEAN mRNA 108199 109698 0.642934 + . ID=CGI_10007138; scaffold42540 GLEAN mRNA 109987 110205 0.776794 - . ID=CGI_10007139; scaffold42540 GLEAN promoter 110206 111205 0.776794 - . ID=CGI_10007139; scaffold42540 GLEAN mRNA 114562 120170 0.997818 - . ID=CGI_10007140; scaffold42540 GLEAN promoter 120171 121170 0.997818 - . ID=CGI_10007140; scaffold42540 GLEAN mRNA 122636 123991 1 - . ID=CGI_10007141; scaffold42540 GLEAN promoter 123992 124991 1 - . ID=CGI_10007141; scaffold42540 GLEAN promoter 125109 126108 0.995457 + . ID=CGI_10007142; scaffold42540 GLEAN mRNA 126109 133782 0.995457 + . ID=CGI_10007142; scaffold42540 GLEAN promoter 133453 134452 1 + . ID=CGI_10007143; scaffold42540 GLEAN mRNA 134453 136778 1 + . ID=CGI_10007143; scaffold42540 GLEAN mRNA 170423 171807 1 - . ID=CGI_10007144; scaffold42540 GLEAN promoter 171808 172072 1 - . ID=CGI_10007144; scaffold42556 GLEAN promoter 21853 22852 1 + . ID=CGI_10007189; scaffold42556 GLEAN mRNA 22853 25346 1 + . ID=CGI_10007189; scaffold42556 WUBlastX LINE_L2 30332 31090 55 - . . scaffold42556 WUBlastX LINE_RTE-X 30446 31096 127 - . . scaffold42556 WUBlastX LINE_RTE-X 30593 31231 96 - . . scaffold42556 WUBlastX LINE_L1 31183 31338 29 - . . scaffold42556 WUBlastX LINE_RTE-X 31192 31305 53 - . . scaffold42556 WUBlastX LINE_CR1 31866 31967 30 - . . scaffold42556 WUBlastX LINE_L2 32110 32295 30 - . . scaffold42556 TRF Tandem_Repeat 32610 33272 828 + . . scaffold42556 GLEAN promoter 40861 41860 0.999478 + . ID=CGI_10007190; scaffold42556 GLEAN mRNA 41861 51823 0.999478 + . ID=CGI_10007190; scaffold42556 TRF Tandem_Repeat 44605 44649 90 + . . scaffold42556 TRF Tandem_Repeat 52182 52240 100 + . . scaffold42556 TRF Tandem_Repeat 52836 53060 126 + . . scaffold42556 TRF Tandem_Repeat 52868 52982 97 + . . scaffold42556 TRF Tandem_Repeat 54432 54488 51 + . . scaffold42556 GLEAN promoter 55758 56757 0.868889 + . ID=CGI_10007191; scaffold42556 GLEAN mRNA 56758 80426 0.868889 + . ID=CGI_10007191; scaffold42556 TRF Tandem_Repeat 58050 58229 163 + . . scaffold42556 TRF Tandem_Repeat 58095 58240 93 + . . scaffold42556 TRF Tandem_Repeat 65771 65829 118 + . . scaffold42556 TRF Tandem_Repeat 65947 65995 80 + . . scaffold42556 GLEAN promoter 80451 81450 1 + . ID=CGI_10007192; scaffold42556 GLEAN mRNA 81451 91371 1 + . ID=CGI_10007192; scaffold42556 TRF Tandem_Repeat 89597 90009 348 + . . scaffold42556 TRF Tandem_Repeat 89597 90009 327 + . . scaffold42556 GLEAN promoter 92749 93748 0.999676 + . ID=CGI_10007194; scaffold42556 GLEAN mRNA 93424 97452 0.999633 - . ID=CGI_10007193; scaffold42556 GLEAN mRNA 93749 98022 0.999676 + . ID=CGI_10007194; scaffold42556 GLEAN promoter 97453 98452 0.999633 - . ID=CGI_10007193; scaffold42556 GLEAN promoter 97846 98845 0.467976 + . ID=CGI_10007195; scaffold42556 WUBlastX DNA_hAT 98030 98758 68 + . . scaffold42556 GLEAN mRNA 98846 99481 0.467976 + . ID=CGI_10007195; scaffold42556 TRF Tandem_Repeat 116730 116771 84 + . . scaffold42556 GLEAN promoter 130489 131488 0.729824 + . ID=CGI_10007196; scaffold42556 GLEAN mRNA 131489 144951 0.729824 + . ID=CGI_10007196; scaffold42556 TRF Tandem_Repeat 150993 151062 97 + . . scaffold42556 TRF Tandem_Repeat 151587 151656 97 + . . scaffold42556 GLEAN mRNA 152155 157537 1 - . ID=CGI_10007197; scaffold42556 GLEAN promoter 157538 158537 1 - . ID=CGI_10007197; scaffold42556 GLEAN promoter 157568 158567 0.664201 + . ID=CGI_10007198; scaffold42556 GLEAN mRNA 158568 171353 0.664201 + . ID=CGI_10007198; scaffold42556 TRF Tandem_Repeat 169448 169570 219 + . . scaffold42556 TRF Tandem_Repeat 172003 173010 1340 + . . scaffold42558 GLEAN promoter 11345 12344 0.593367 + . ID=CGI_10007214; scaffold42558 GLEAN mRNA 12345 15639 0.593367 + . ID=CGI_10007214; scaffold42558 GLEAN mRNA 17953 19145 0.999661 - . ID=CGI_10007215; scaffold42558 GLEAN promoter 19146 20145 0.999661 - . ID=CGI_10007215; scaffold42558 GLEAN promoter 19720 20719 0.998374 + . ID=CGI_10007216; scaffold42558 GLEAN mRNA 20720 28764 0.998374 + . ID=CGI_10007216; scaffold42558 GLEAN promoter 30442 31441 0.996172 + . ID=CGI_10007217; scaffold42558 TRF Tandem_Repeat 30585 30625 82 + . . scaffold42558 GLEAN mRNA 31442 55705 0.996172 + . ID=CGI_10007217; scaffold42558 TRF Tandem_Repeat 33130 33207 156 + . . scaffold42558 TRF Tandem_Repeat 41031 41084 108 + . . scaffold42558 TRF Tandem_Repeat 42282 42321 80 + . . scaffold42558 GLEAN promoter 60187 61186 0.593383 + . ID=CGI_10007218; scaffold42558 GLEAN mRNA 61187 67890 0.593383 + . ID=CGI_10007218; scaffold42558 TRF Tandem_Repeat 68747 68776 60 + . . scaffold42558 WUBlastX LTR_Gypsy 71651 72400 41 + . . scaffold42558 WUBlastX LTR_Gypsy 71795 72403 70 + . . scaffold42558 WUBlastX LTR_Gypsy 72305 72445 35 + . . scaffold42558 WUBlastX LTR_Gypsy 72447 73622 673 + . . scaffold42558 WUBlastX LTR_Gypsy 73137 73754 197 + . . scaffold42558 WUBlastX LTR_Gypsy 73651 74106 90 + . . scaffold42558 WUBlastX LTR_Gypsy 73660 74193 35 + . . scaffold42558 GLEAN promoter 75601 76600 0.636302 + . ID=CGI_10007219; scaffold42558 GLEAN mRNA 76601 77724 0.636302 + . ID=CGI_10007219; scaffold42558 TRF Tandem_Repeat 80518 81513 912 + . . scaffold42558 GLEAN promoter 83864 84863 0.979088 + . ID=CGI_10007220; scaffold42558 GLEAN mRNA 84864 89391 0.979088 + . ID=CGI_10007220; scaffold42558 WUBlastX LINE_L1 88952 89029 28 + . . scaffold42558 WUBlastX LINE_L1 89437 89643 56 + . . scaffold42558 WUBlastX LINE_L1-Tx1 89476 91377 529 + . . scaffold42558 WUBlastX LTR_Ngaro 98009 98176 90 - . . scaffold42558 TRF Tandem_Repeat 99440 99491 55 + . . scaffold42558 GLEAN promoter 99913 100912 0.814097 + . ID=CGI_10007221; scaffold42558 GLEAN mRNA 100913 115008 0.814097 + . ID=CGI_10007221; scaffold42558 TRF Tandem_Repeat 105237 106777 2106 + . . scaffold42558 TRF Tandem_Repeat 109219 109258 62 + . . scaffold42558 WUBlastX LINE_L1-Tx1 122605 122817 93 + . . scaffold42558 WUBlastX LINE_L1-Tx1 122790 123164 154 + . . scaffold42558 WUBlastX LINE_L1-Tx1 123167 123889 121 + . . scaffold42558 WUBlastX LINE_L1-Tx1 123849 124700 326 + . . scaffold42558 WUBlastX LINE_L1 124410 124760 80 + . . scaffold42558 WUBlastX LINE_L1-Tx1 125206 125469 46 + . . scaffold42558 WUBlastX LINE_L1-Tx1 125471 125995 102 + . . scaffold42558 WUBlastX LINE_L1 125997 126167 70 + . . scaffold42558 WUBlastX LINE_L1-Tx1 126181 126639 29 + . . scaffold42558 TRF Tandem_Repeat 131234 131260 54 + . . scaffold42558 TRF Tandem_Repeat 131258 131296 78 + . . scaffold42558 WUBlastX LTR_Pao 132641 133072 25 + . . scaffold42558 WUBlastX LINE_CR1-L2 138505 138945 59 - . . scaffold42558 WUBlastX LINE_CR1-L2 138643 138945 78 - . . scaffold42558 WUBlastX LINE_CR1-L2 138932 139012 37 - . . scaffold42558 WUBlastX LINE_CR1 140629 140802 62 - . . scaffold42558 GLEAN promoter 143379 144378 0.999999 + . ID=CGI_10007222; scaffold42558 GLEAN mRNA 144379 147929 0.999999 + . ID=CGI_10007222; scaffold42558 GLEAN promoter 155511 156510 0.999935 + . ID=CGI_10007223; scaffold42558 GLEAN mRNA 156511 173271 0.999935 + . ID=CGI_10007223; scaffold42558 TRF Tandem_Repeat 171386 171731 483 + . . scaffold42566 TRF Tandem_Repeat 1168 1212 90 + . . scaffold42566 TRF Tandem_Repeat 7390 7421 64 + . . scaffold42566 TRF Tandem_Repeat 8667 8704 67 + . . scaffold42566 TRF Tandem_Repeat 8874 10737 3215 + . . scaffold42566 GLEAN promoter 12027 13026 0.979438 + . ID=CGI_10007178; scaffold42566 GLEAN mRNA 13027 31482 0.979438 + . ID=CGI_10007178; scaffold42566 TRF Tandem_Repeat 17338 17396 109 + . . scaffold42566 TRF Tandem_Repeat 31615 31671 114 + . . scaffold42566 WUBlastX LINE_RTE-BovB 39464 39604 20 - . . scaffold42566 WUBlastX LINE_RTE-BovB 39528 39626 36 - . . scaffold42566 WUBlastX LINE_RTE-BovB 39623 40021 72 - . . scaffold42566 WUBlastX LINE_RTE-BovB 40060 40680 222 - . . scaffold42566 WUBlastX LINE_RTE-BovB 40651 40920 79 - . . scaffold42566 WUBlastX LINE_RTE-BovB 40731 41795 358 - . . scaffold42566 WUBlastX LINE_RTE-RTE 41289 41966 122 - . . scaffold42566 TRF Tandem_Repeat 65673 65705 66 + . . scaffold42566 TRF Tandem_Repeat 120835 120878 88 + . . scaffold42566 TRF Tandem_Repeat 129964 130028 107 + . . scaffold42566 TRF Tandem_Repeat 149186 149234 98 + . . scaffold42566 TRF Tandem_Repeat 157938 158004 80 + . . scaffold42566 TRF Tandem_Repeat 161448 161484 58 + . . scaffold42568 GLEAN promoter 8653 9652 0.999372 + . ID=CGI_10007264; scaffold42568 WUBlastX LINE_RTE-BovB 9087 9548 101 - . . scaffold42568 WUBlastX LINE_RTE-BovB 9213 9596 109 - . . scaffold42568 WUBlastX LINE_RTE-BovB 9351 9605 166 - . . scaffold42568 GLEAN mRNA 9653 9847 0.999372 + . ID=CGI_10007264; scaffold42568 WUBlastX LINE_L1 9819 10289 24 - . . scaffold42568 WUBlastX LINE_RTE-BovB 9912 11447 259 - . . scaffold42568 WUBlastX LINE_RTE-BovB 9936 10499 340 - . . scaffold42568 WUBlastX LINE_RTE-BovB 11446 11586 89 - . . scaffold42568 WUBlastX LINE_RTE-RTE 11492 11947 105 - . . scaffold42568 WUBlastX LINE_RTE-BovB 11597 11962 223 - . . scaffold42568 WUBlastX LINE_RTE-BovB 11962 12021 51 - . . scaffold42568 WUBlastX LINE_RTE-BovB 12036 12113 22 - . . scaffold42568 WUBlastX LINE_L1 12063 12152 23 - . . scaffold42568 TRF Tandem_Repeat 13868 13931 128 + . . scaffold42568 TRF Tandem_Repeat 19968 19993 52 + . . scaffold42568 GLEAN promoter 20645 21644 0.50892 + . ID=CGI_10007265; scaffold42568 GLEAN mRNA 21645 48345 0.50892 + . ID=CGI_10007265; scaffold42568 WUBlastX DNA_NOF? 35035 35700 128 + . . scaffold42568 WUBlastX DNA_IS4EU 35044 35496 142 + . . scaffold42568 TRF Tandem_Repeat 39860 39928 129 + . . scaffold42568 GLEAN mRNA 41489 44024 0.994137 - . ID=CGI_10007266; scaffold42568 GLEAN promoter 44025 45024 0.994137 - . ID=CGI_10007266; scaffold42568 TRF Tandem_Repeat 51059 51116 82 + . . scaffold42568 TRF Tandem_Repeat 51062 51115 65 + . . scaffold42568 GLEAN mRNA 51571 102707 0.2702 - . ID=CGI_10007267; scaffold42568 TRF Tandem_Repeat 72629 73457 1073 + . . scaffold42568 GLEAN promoter 102708 103707 0.2702 - . ID=CGI_10007267; scaffold42568 GLEAN promoter 109786 110785 1 + . ID=CGI_10007268; scaffold42568 TRF Tandem_Repeat 110288 110340 56 + . . scaffold42568 GLEAN mRNA 110786 116641 1 + . ID=CGI_10007268; scaffold42568 TRF Tandem_Repeat 119528 119711 244 + . . scaffold42568 GLEAN promoter 135696 136695 0.655948 + . ID=CGI_10007269; scaffold42568 GLEAN mRNA 136696 138523 0.655948 + . ID=CGI_10007269; scaffold42568 TRF Tandem_Repeat 146103 146171 138 + . . scaffold42568 TRF Tandem_Repeat 154515 154557 86 + . . scaffold42568 TRF Tandem_Repeat 154591 154660 140 + . . scaffold42568 WUBlastX LINE_RTE-BovB 157890 158027 69 - . . scaffold42568 GLEAN promoter 164987 165986 0.997345 + . ID=CGI_10007270; scaffold42568 GLEAN mRNA 165987 167222 0.997345 + . ID=CGI_10007270; scaffold42568 TRF Tandem_Repeat 167788 167840 106 + . . scaffold42568 TRF Tandem_Repeat 169128 169199 53 + . . scaffold42568 GLEAN mRNA 171940 173535 0.999997 - . ID=CGI_10007271; scaffold42568 GLEAN promoter 173536 174535 0.999997 - . ID=CGI_10007271; scaffold42570 WUBlastX DNA_Merlin 2501 3301 289 + . . scaffold42570 WUBlastX DNA_Merlin 2639 3364 395 + . . scaffold42570 TRF Tandem_Repeat 4359 4416 116 + . . scaffold42570 TRF Tandem_Repeat 4712 4759 87 + . . scaffold42570 GLEAN promoter 7098 8097 0.949085 + . ID=CGI_10007233; scaffold42570 GLEAN mRNA 8098 32477 0.949085 + . ID=CGI_10007233; scaffold42570 WUBlastX LINE_CR1 15287 15418 29 + . . scaffold42570 WUBlastX LINE_CR1 16325 16465 106 + . . scaffold42570 WUBlastX LINE_CR1-L2 16343 16540 97 + . . scaffold42570 WUBlastX LINE_CR1 16343 16501 99 + . . scaffold42570 WUBlastX LINE_CR1-L2 16542 16592 21 + . . scaffold42570 WUBlastX LINE_CR1 16551 16760 94 + . . scaffold42570 WUBlastX LINE_CR1 16554 16694 100 + . . scaffold42570 WUBlastX LINE_CR1-L2 16572 16847 93 + . . scaffold42570 WUBlastX LINE_CR1 16578 17018 39 + . . scaffold42570 WUBlastX LINE_L2 16581 16922 60 + . . scaffold42570 GLEAN mRNA 38487 65913 0.460783 - . ID=CGI_10007234; scaffold42570 TRF Tandem_Repeat 41539 41583 63 + . . scaffold42570 TRF Tandem_Repeat 47795 48030 463 + . . scaffold42570 GLEAN promoter 65914 66913 0.460783 - . ID=CGI_10007234; scaffold42570 TRF Tandem_Repeat 70795 70837 68 + . . scaffold42570 TRF Tandem_Repeat 70870 70908 78 + . . scaffold42570 TRF Tandem_Repeat 72722 72757 72 + . . scaffold42570 TRF Tandem_Repeat 86423 86475 106 + . . scaffold42570 TRF Tandem_Repeat 87037 87072 72 + . . scaffold42570 GLEAN mRNA 91875 100603 0.723532 - . ID=CGI_10007235; scaffold42570 GLEAN promoter 100604 101603 0.723532 - . ID=CGI_10007235; scaffold42570 GLEAN mRNA 103758 123015 0.838814 - . ID=CGI_10007236; scaffold42570 GLEAN promoter 123016 124015 0.838814 - . ID=CGI_10007236; scaffold42570 GLEAN promoter 129906 130905 0.354991 + . ID=CGI_10007237; scaffold42570 GLEAN mRNA 130906 147257 0.354991 + . ID=CGI_10007237; scaffold42570 GLEAN mRNA 147629 155105 1 - . ID=CGI_10007238; scaffold42570 GLEAN promoter 155106 156105 1 - . ID=CGI_10007238; scaffold42570 GLEAN mRNA 155314 172031 1 - . ID=CGI_10007239; scaffold42570 TRF Tandem_Repeat 169335 169365 62 + . . scaffold42570 GLEAN promoter 172032 173031 1 - . ID=CGI_10007239; scaffold42584 TRF Tandem_Repeat 817 859 86 + . . scaffold42584 GLEAN mRNA 2731 3834 0.836235 - . ID=CGI_10007303; scaffold42584 GLEAN promoter 3835 4834 0.836235 - . ID=CGI_10007303; scaffold42584 GLEAN promoter 26284 27283 0.988234 + . ID=CGI_10007304; scaffold42584 GLEAN mRNA 27284 39874 0.988234 + . ID=CGI_10007304; scaffold42584 GLEAN promoter 43577 44576 0.999676 + . ID=CGI_10007305; scaffold42584 TRF Tandem_Repeat 43600 43635 72 + . . scaffold42584 TRF Tandem_Repeat 44380 44481 141 + . . scaffold42584 GLEAN mRNA 44577 50077 0.999676 + . ID=CGI_10007305; scaffold42584 GLEAN mRNA 51671 64078 0.999415 - . ID=CGI_10007306; scaffold42584 TRF Tandem_Repeat 62616 62654 78 + . . scaffold42584 GLEAN promoter 64079 65078 0.999415 - . ID=CGI_10007306; scaffold42584 GLEAN promoter 64233 65232 0.999264 + . ID=CGI_10007307; scaffold42584 GLEAN mRNA 65233 70438 0.999264 + . ID=CGI_10007307; scaffold42584 GLEAN promoter 71528 72527 0.592742 + . ID=CGI_10007308; scaffold42584 GLEAN mRNA 72528 80539 0.592742 + . ID=CGI_10007308; scaffold42584 WUBlastX LTR_DIRS 72799 73317 125 + . . scaffold42584 WUBlastX LTR_DIRS 73436 73783 172 + . . scaffold42584 TRF Tandem_Repeat 76687 76722 63 + . . scaffold42584 GLEAN promoter 86388 87387 0.998677 + . ID=CGI_10007309; scaffold42584 GLEAN mRNA 87388 105090 0.998677 + . ID=CGI_10007309; scaffold42584 WUBlastX DNA_Crypton 95483 95896 87 - . . scaffold42584 WUBlastX DNA_Crypton 95489 95995 71 - . . scaffold42584 WUBlastX DNA_Crypton 96465 97043 71 - . . scaffold42584 WUBlastX LINE_CR1-L2 100207 100683 39 + . . scaffold42584 WUBlastX LINE_L2 100330 100734 47 + . . scaffold42584 WUBlastX LINE_CR1 100408 100683 62 + . . scaffold42584 WUBlastX LINE_L2 100558 100734 84 + . . scaffold42584 WUBlastX LINE_CR1 100564 100701 93 + . . scaffold42584 WUBlastX LINE_L2 100564 100887 48 + . . scaffold42584 WUBlastX LINE_L2 100573 100803 65 + . . scaffold42584 WUBlastX LINE_CR1-L2 100746 100991 24 + . . scaffold42584 TRF Tandem_Repeat 104520 104756 145 + . . scaffold42584 TRF Tandem_Repeat 104520 104631 134 + . . scaffold42584 TRF Tandem_Repeat 104548 104772 145 + . . scaffold42584 TRF Tandem_Repeat 104548 104772 172 + . . scaffold42584 TRF Tandem_Repeat 104609 104772 160 + . . scaffold42584 TRF Tandem_Repeat 105835 105925 107 + . . scaffold42584 TRF Tandem_Repeat 105868 105990 70 + . . scaffold42584 WUBlastX DNA_TcMar-Marin 111276 111419 55 - . . scaffold42584 WUBlastX DNA_TcMar-Marin 111312 111560 64 - . . scaffold42584 TRF Tandem_Repeat 118735 118763 58 + . . scaffold42584 TRF Tandem_Repeat 118868 118894 54 + . . scaffold42584 GLEAN promoter 119716 120715 0.997566 + . ID=CGI_10007310; scaffold42584 GLEAN mRNA 120716 121792 0.997566 + . ID=CGI_10007310; scaffold42584 TRF Tandem_Repeat 122638 122688 102 + . . scaffold42584 WUBlastX LINE_RTE-X 132817 133125 50 + . . scaffold42584 WUBlastX LINE_RTE-X 132877 133125 53 + . . scaffold42584 WUBlastX LINE_RTE-BovB 134076 134117 24 + . . scaffold42584 WUBlastX LINE_CR1 134168 134359 35 + . . scaffold42584 WUBlastX LINE_CR1 134177 134308 62 + . . scaffold42584 WUBlastX LINE_RTE-RTE 134177 134335 40 + . . scaffold42584 WUBlastX LINE_RTE-X 134192 134929 25 + . . scaffold42584 WUBlastX LINE_RTE-X 134484 134654 91 + . . scaffold42584 WUBlastX LINE_Proto2 134651 134992 31 + . . scaffold42584 WUBlastX LINE_L2 134666 134734 34 + . . scaffold42584 WUBlastX LINE_RTE-X 134675 134932 33 + . . scaffold42584 WUBlastX LINE_RTE-X 135001 135198 37 + . . scaffold42584 WUBlastX LINE_RTE-X 135219 135317 55 + . . scaffold42584 WUBlastX LINE_RTE-X 135219 135338 32 + . . scaffold42584 TRF Tandem_Repeat 140944 141258 585 + . . scaffold42584 TRF Tandem_Repeat 153085 153130 92 + . . scaffold42584 GLEAN mRNA 155634 164529 0.999938 - . ID=CGI_10007311; scaffold42584 GLEAN promoter 164530 165529 0.999938 - . ID=CGI_10007311; scaffold42584 TRF Tandem_Repeat 174035 174738 871 + . . scaffold42584 TRF Tandem_Repeat 176021 176047 54 + . . scaffold42592 WUBlastX LINE_L2 1991 2509 203 + . . scaffold42592 GLEAN promoter 3026 4025 0.985126 + . ID=CGI_10007252; scaffold42592 GLEAN mRNA 4026 4487 0.985126 + . ID=CGI_10007252; scaffold42592 GLEAN promoter 4952 5951 0.915527 + . ID=CGI_10007253; scaffold42592 GLEAN mRNA 5952 26121 0.915527 + . ID=CGI_10007253; scaffold42592 TRF Tandem_Repeat 26264 26370 144 + . . scaffold42592 GLEAN mRNA 27351 32874 1 - . ID=CGI_10007254; scaffold42592 GLEAN promoter 30012 31011 0.805998 + . ID=CGI_10007255; scaffold42592 GLEAN mRNA 31012 48199 0.805998 + . ID=CGI_10007255; scaffold42592 GLEAN promoter 32875 33874 1 - . ID=CGI_10007254; scaffold42592 GLEAN mRNA 33035 39328 0.937129 - . ID=CGI_10007256; scaffold42592 TRF Tandem_Repeat 37804 38095 453 + . . scaffold42592 GLEAN promoter 39329 40328 0.937129 - . ID=CGI_10007256; scaffold42592 TRF Tandem_Repeat 43559 43588 60 + . . scaffold42592 GLEAN mRNA 47807 49810 0.998724 - . ID=CGI_10007257; scaffold42592 TRF Tandem_Repeat 48229 48275 94 + . . scaffold42592 GLEAN promoter 49271 50270 0.799719 + . ID=CGI_10007258; scaffold42592 GLEAN promoter 49811 50810 0.998724 - . ID=CGI_10007257; scaffold42592 GLEAN mRNA 50271 54108 0.799719 + . ID=CGI_10007258; scaffold42592 GLEAN mRNA 54657 69815 0.903274 - . ID=CGI_10007259; scaffold42592 TRF Tandem_Repeat 55230 55278 62 + . . scaffold42592 TRF Tandem_Repeat 57940 57989 91 + . . scaffold42592 TRF Tandem_Repeat 58638 58683 92 + . . scaffold42592 GLEAN promoter 59947 60946 0.999968 + . ID=CGI_10007260; scaffold42592 GLEAN mRNA 60947 65713 0.999968 + . ID=CGI_10007260; scaffold42592 TRF Tandem_Repeat 68673 68724 104 + . . scaffold42592 GLEAN promoter 69816 70815 0.903274 - . ID=CGI_10007259; scaffold42592 GLEAN mRNA 71284 84196 0.793991 - . ID=CGI_10007261; scaffold42592 GLEAN promoter 84197 85196 0.793991 - . ID=CGI_10007261; scaffold42592 WUBlastX LINE_L2 86311 86952 106 - . . scaffold42592 WUBlastX LINE_L2 86753 87343 304 - . . scaffold42592 WUBlastX LINE_L2 86798 87490 103 - . . scaffold42592 WUBlastX DNA_Harbinger 95150 95524 53 + . . scaffold42592 WUBlastX DNA_Harbinger 95207 95560 171 + . . scaffold42592 TRF Tandem_Repeat 111997 112733 1023 + . . scaffold42592 TRF Tandem_Repeat 115147 115857 956 + . . scaffold42592 TRF Tandem_Repeat 128530 129609 1449 + . . scaffold42592 TRF Tandem_Repeat 131850 131907 116 + . . scaffold42592 WUBlastX DNA_Harbinger 136555 137049 175 - . . scaffold42592 WUBlastX DNA_Harbinger 137073 137252 46 - . . scaffold42592 WUBlastX DNA_Harbinger 137106 137285 85 - . . scaffold42592 WUBlastX DNA_Harbinger 137112 137327 23 - . . scaffold42592 WUBlastX DNA_Harbinger 137780 137866 21 - . . scaffold42592 GLEAN promoter 141671 142670 1 + . ID=CGI_10007262; scaffold42592 TRF Tandem_Repeat 142502 142593 121 + . . scaffold42592 GLEAN mRNA 142671 143072 1 + . ID=CGI_10007262; scaffold42592 WUBlastX DNA_Kolobok-IS4 143396 143542 83 + . . scaffold42592 WUBlastX DNA_IS4EU 143650 143838 24 + . . scaffold42592 WUBlastX DNA_IS4EU 143662 143766 24 + . . scaffold42592 WUBlastX DNA_IS4EU 144425 144772 135 + . . scaffold42592 WUBlastX DNA_Kolobok-IS4 144506 144847 131 + . . scaffold42592 WUBlastX DNA_Kolobok-IS4 144861 145001 39 + . . scaffold42592 WUBlastX DNA_IS4EU 145436 145615 79 - . . scaffold42592 WUBlastX DNA_IS4EU 145600 145986 273 - . . scaffold42592 WUBlastX DNA_IS4EU 145964 146440 83 - . . scaffold42592 WUBlastX DNA_Kolobok-IS4 145973 146326 107 - . . scaffold42592 WUBlastX DNA_IS4EU 146958 147308 35 - . . scaffold42592 WUBlastX DNA_hAT-Tip100 147066 147308 49 - . . scaffold42592 WUBlastX DNA_IS4EU 147078 147242 61 - . . scaffold42592 TRF Tandem_Repeat 148351 148461 84 + . . scaffold42592 TRF Tandem_Repeat 163643 163668 52 + . . scaffold42592 WUBlastX DNA_TcMar-Tc1 167431 167868 100 - . . scaffold42596 GLEAN promoter 1 459 1 + . ID=CGI_10007272; scaffold42596 GLEAN mRNA 460 14719 1 + . ID=CGI_10007272; scaffold42596 TRF Tandem_Repeat 1550 1615 132 + . . scaffold42596 TRF Tandem_Repeat 2204 2244 82 + . . scaffold42596 TRF Tandem_Repeat 9279 9331 88 + . . scaffold42596 TRF Tandem_Repeat 9279 9334 58 + . . scaffold42596 TRF Tandem_Repeat 9279 9334 76 + . . scaffold42596 TRF Tandem_Repeat 21042 21089 78 + . . scaffold42596 WUBlastX DNA_hAT-Tip100 24283 24675 103 + . . scaffold42596 WUBlastX DNA_Sola 24662 25870 584 - . . scaffold42596 WUBlastX DNA_Sola 29058 29396 71 - . . scaffold42596 GLEAN promoter 30322 31321 0.988873 + . ID=CGI_10007273; scaffold42596 WUBlastX LTR_Pao 30673 30840 46 + . . scaffold42596 GLEAN mRNA 31322 31732 0.988873 + . ID=CGI_10007273; scaffold42596 GLEAN mRNA 33468 58023 0.611644 - . ID=CGI_10007274; scaffold42596 TRF Tandem_Repeat 33933 34164 176 + . . scaffold42596 TRF Tandem_Repeat 55543 55596 74 + . . scaffold42596 GLEAN promoter 58024 59023 0.611644 - . ID=CGI_10007274; scaffold42596 TRF Tandem_Repeat 68002 68085 150 + . . scaffold42596 TRF Tandem_Repeat 68459 68589 217 + . . scaffold42596 TRF Tandem_Repeat 89095 89154 79 + . . scaffold42596 WUBlastX LINE_L2 97037 97561 151 + . . scaffold42596 WUBlastX LINE_L2 97560 97661 31 + . . scaffold42596 WUBlastX LTR_Gypsy 99161 99295 27 - . . scaffold42596 WUBlastX LTR_Gypsy 99182 99751 442 - . . scaffold42596 WUBlastX LTR_Gypsy 99706 100401 266 - . . scaffold42596 WUBlastX LTR_Gypsy-Cigr 99706 100296 418 - . . scaffold42596 WUBlastX LTR_Gypsy 100445 100741 43 - . . scaffold42596 WUBlastX LTR_Gypsy 100544 100714 46 - . . scaffold42596 WUBlastX LINE_CR1 100580 101041 82 - . . scaffold42596 WUBlastX LINE_CR1 100727 101077 114 - . . scaffold42596 WUBlastX LINE_CR1 101034 101189 85 - . . scaffold42596 WUBlastX LINE_CR1 101034 101159 93 - . . scaffold42596 WUBlastX LINE_CR1 101055 101219 69 - . . scaffold42596 TRF Tandem_Repeat 101718 101765 96 + . . scaffold42596 TRF Tandem_Repeat 102403 102483 90 + . . scaffold42596 GLEAN promoter 122475 123474 0.999563 + . ID=CGI_10007275; scaffold42596 GLEAN mRNA 123475 124336 0.999563 + . ID=CGI_10007275; scaffold42596 TRF Tandem_Repeat 124290 124927 1051 + . . scaffold42596 TRF Tandem_Repeat 126539 126581 54 + . . scaffold42596 TRF Tandem_Repeat 126541 126581 64 + . . scaffold42596 GLEAN mRNA 128544 150568 0.990768 - . ID=CGI_10007276; scaffold42596 TRF Tandem_Repeat 132237 132500 422 + . . scaffold42596 TRF Tandem_Repeat 134747 134926 306 + . . scaffold42596 TRF Tandem_Repeat 136174 136312 260 + . . scaffold42596 TRF Tandem_Repeat 136180 136267 66 + . . scaffold42596 TRF Tandem_Repeat 137218 137243 52 + . . scaffold42596 GLEAN promoter 150569 151568 0.990768 - . ID=CGI_10007276; scaffold42596 TRF Tandem_Repeat 155151 155210 68 + . . scaffold42596 TRF Tandem_Repeat 170659 171534 1554 + . . scaffold42596 WUBlastX LINE_CR1 175182 175505 22 - . . scaffold42598 GLEAN mRNA 1054 2554 1 - . ID=CGI_10007330; scaffold42598 GLEAN promoter 2555 3554 1 - . ID=CGI_10007330; scaffold42598 GLEAN mRNA 10844 19346 0.999957 - . ID=CGI_10007331; scaffold42598 TRF Tandem_Repeat 14855 14895 61 + . . scaffold42598 TRF Tandem_Repeat 16936 16989 74 + . . scaffold42598 GLEAN promoter 19347 20346 0.999957 - . ID=CGI_10007331; scaffold42598 TRF Tandem_Repeat 22532 23728 1683 + . . scaffold42598 TRF Tandem_Repeat 23898 23951 54 + . . scaffold42598 TRF Tandem_Repeat 23905 23998 134 + . . scaffold42598 TRF Tandem_Repeat 26619 26714 104 + . . scaffold42598 TRF Tandem_Repeat 27225 27288 85 + . . scaffold42598 GLEAN mRNA 27634 41292 0.705748 - . ID=CGI_10007332; scaffold42598 GLEAN promoter 41293 42292 0.705748 - . ID=CGI_10007332; scaffold42598 GLEAN promoter 50303 51302 0.0124996 + . ID=CGI_10007333; scaffold42598 GLEAN mRNA 51303 78059 0.0124996 + . ID=CGI_10007333; scaffold42598 WUBlastX LINE_RTE-X 52378 53160 200 - . . scaffold42598 WUBlastX LINE_RTE-X 52516 53160 346 - . . scaffold42598 WUBlastX LINE_RTE-X 53232 54407 626 - . . scaffold42598 TRF Tandem_Repeat 82445 82900 736 + . . scaffold42598 TRF Tandem_Repeat 84602 85492 1248 + . . scaffold42598 TRF Tandem_Repeat 91843 91909 89 + . . scaffold42598 GLEAN promoter 95203 96202 0.534867 + . ID=CGI_10007334; scaffold42598 GLEAN mRNA 96203 109481 0.534867 + . ID=CGI_10007334; scaffold42598 TRF Tandem_Repeat 97325 97358 50 + . . scaffold42598 TRF Tandem_Repeat 98715 98791 118 + . . scaffold42598 GLEAN mRNA 100505 115722 0.37076 - . ID=CGI_10007335; scaffold42598 TRF Tandem_Repeat 109523 109566 56 + . . scaffold42598 GLEAN promoter 115723 116722 0.37076 - . ID=CGI_10007335; scaffold42598 GLEAN mRNA 126709 132162 1 - . ID=CGI_10007336; scaffold42598 GLEAN promoter 132163 133162 1 - . ID=CGI_10007336; scaffold42598 TRF Tandem_Repeat 133153 133243 103 + . . scaffold42598 TRF Tandem_Repeat 133169 133256 106 + . . scaffold42598 GLEAN promoter 139707 140706 0.8437 + . ID=CGI_10007337; scaffold42598 GLEAN mRNA 140707 160364 0.8437 + . ID=CGI_10007337; scaffold42598 TRF Tandem_Repeat 148274 148984 563 + . . scaffold42598 TRF Tandem_Repeat 148277 148954 209 + . . scaffold42598 TRF Tandem_Repeat 151528 151582 92 + . . scaffold42598 TRF Tandem_Repeat 151593 152283 1000 + . . scaffold42598 WUBlastX LINE_RTE-BovB 161449 161556 42 + . . scaffold42598 WUBlastX LINE_RTE-BovB 161552 161743 66 + . . scaffold42598 WUBlastX LINE_RTE-BovB 161588 161749 73 + . . scaffold42598 WUBlastX LINE_RTE-BovB 161745 162068 93 + . . scaffold42598 TRF Tandem_Repeat 162550 162577 56 + . . scaffold42598 TRF Tandem_Repeat 172194 172435 403 + . . scaffold42598 TRF Tandem_Repeat 174698 174815 175 + . . scaffold426 TRF Tandem_Repeat 4683 4745 126 + . . scaffold426 GLEAN mRNA 23680 24420 1 - . ID=CGI_10006147; scaffold426 GLEAN promoter 24421 25420 1 - . ID=CGI_10006147; scaffold426 TRF Tandem_Repeat 37695 37841 222 + . . scaffold426 GLEAN promoter 45817 46816 0.991182 + . ID=CGI_10006148; scaffold426 GLEAN mRNA 46817 47299 0.991182 + . ID=CGI_10006148; scaffold426 TRF Tandem_Repeat 50687 50729 86 + . . scaffold426 WUBlastX LTR_DIRS 59394 59810 98 + . . scaffold426 WUBlastX LTR_DIRS 59822 59899 22 + . . scaffold426 GLEAN mRNA 68066 78232 0.995954 - . ID=CGI_10006149; scaffold426 GLEAN promoter 78233 79232 0.995954 - . ID=CGI_10006149; scaffold426 GLEAN mRNA 80088 90068 0.325429 - . ID=CGI_10006150; scaffold426 TRF Tandem_Repeat 87559 87592 59 + . . scaffold426 GLEAN promoter 90069 91068 0.325429 - . ID=CGI_10006150; scaffold426 WUBlastX LINE_L1-Tx1 93712 93786 36 - . . scaffold426 WUBlastX LINE_L1 93715 93813 26 - . . scaffold426 WUBlastX LINE_L1-Tx1 93932 94009 20 - . . scaffold426 WUBlastX LINE_L1-Tx1 94189 94623 30 - . . scaffold426 WUBlastX LINE_L1 94216 94335 36 - . . scaffold426 WUBlastX LINE_L1-Tx1 94519 94671 42 - . . scaffold426 WUBlastX LINE_L1 94646 95041 59 - . . scaffold426 WUBlastX LINE_L1-Tx1 95043 95153 21 - . . scaffold426 WUBlastX LINE_L1 95076 95150 27 - . . scaffold426 WUBlastX LINE_L1-Tx1 95140 95466 64 - . . scaffold426 WUBlastX LINE_L1-Tx1 95179 95406 91 - . . scaffold426 WUBlastX LINE_L1 95423 95491 51 - . . scaffold426 WUBlastX LINE_L1-Tx1 95423 95581 30 - . . scaffold426 WUBlastX LINE_L1 95606 95800 31 - . . scaffold426 GLEAN promoter 97394 98393 0.6259 + . ID=CGI_10006151; scaffold426 GLEAN mRNA 98394 100928 0.6259 + . ID=CGI_10006151; scaffold426 TRF Tandem_Repeat 99607 99653 94 + . . scaffold426 WUBlastX LINE_Penelope 105072 105671 94 - . . scaffold426 GLEAN promoter 107199 108198 0.989967 + . ID=CGI_10006152; scaffold426 TRF Tandem_Repeat 107818 107858 82 + . . scaffold426 GLEAN mRNA 108199 114786 0.989967 + . ID=CGI_10006152; scaffold426 TRF Tandem_Repeat 122338 122383 74 + . . scaffold426 TRF Tandem_Repeat 130293 130327 52 + . . scaffold426 TRF Tandem_Repeat 131128 131186 82 + . . scaffold426 TRF Tandem_Repeat 136720 137325 735 + . . scaffold426 WUBlastX LINE_L2 137958 138143 47 + . . scaffold42604 GLEAN promoter 27580 28579 1 + . ID=CGI_10007312; scaffold42604 GLEAN mRNA 28580 37433 1 + . ID=CGI_10007312; scaffold42604 WUBlastX LTR_DIRS 28589 29245 22 + . . scaffold42604 WUBlastX LTR_DIRS 29126 29245 54 + . . scaffold42604 TRF Tandem_Repeat 31096 31149 74 + . . scaffold42604 TRF Tandem_Repeat 31104 31149 56 + . . scaffold42604 GLEAN mRNA 43936 67814 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 45836 45866 55 + . . scaffold42604 TRF Tandem_Repeat 45978 46032 96 + . . scaffold42604 TRF Tandem_Repeat 55304 55329 52 + . . scaffold42604 TRF Tandem_Repeat 59526 59686 115 + . . scaffold42604 TRF Tandem_Repeat 59526 59686 151 + . . scaffold42604 TRF Tandem_Repeat 65256 65903 847 + . . scaffold42604 TRF Tandem_Repeat 65256 65903 996 + . . scaffold42604 TRF Tandem_Repeat 65256 65906 885 + . . scaffold42604 GLEAN promoter 67815 68814 0.9993 - . ID=CGI_10007313; scaffold42604 TRF Tandem_Repeat 68354 68429 80 + . . scaffold42604 GLEAN mRNA 82807 95435 0.998973 - . ID=CGI_10007314; scaffold42604 TRF Tandem_Repeat 85104 85153 100 + . . scaffold42604 TRF Tandem_Repeat 88956 89130 305 + . . scaffold42604 TRF Tandem_Repeat 91706 91751 92 + . . scaffold42604 TRF Tandem_Repeat 93045 93092 96 + . . scaffold42604 GLEAN promoter 95436 96435 0.998973 - . ID=CGI_10007314; scaffold42604 TRF Tandem_Repeat 99045 99850 1135 + . . scaffold42604 WUBlastX LTR_DIRS 102968 103606 221 - . . scaffold42604 WUBlastX LTR_DIRS 102968 103453 333 - . . scaffold42604 WUBlastX DNA_TcMar-Tc1 108211 108462 89 - . . scaffold42604 WUBlastX DNA_TcMar-Tc1 108268 109131 88 - . . scaffold42604 WUBlastX DNA_TcMar-Tc1 108271 108453 91 - . . scaffold42604 WUBlastX LTR_DIRS 136599 136745 47 + . . scaffold42604 WUBlastX LTR_DIRS 136661 137614 545 + . . scaffold42604 TRF Tandem_Repeat 149098 149221 248 + . . scaffold42604 TRF Tandem_Repeat 161299 161363 62 + . . scaffold42604 TRF Tandem_Repeat 161322 161393 53 + . . scaffold42604 GLEAN mRNA 175498 175716 0.481188 - . ID=CGI_10007315; scaffold42604 GLEAN promoter 175717 176716 0.481188 - . ID=CGI_10007315; scaffold42604 WUBlastX LINE_Penelope 176431 176718 44 - . . scaffold42604 WUBlastX LINE_Penelope 176455 176688 128 - . . scaffold42618 TRF Tandem_Repeat 1190 1540 580 + . . scaffold42618 TRF Tandem_Repeat 31130 31177 96 + . . scaffold42618 TRF Tandem_Repeat 32681 32742 124 + . . scaffold42618 GLEAN promoter 38630 39629 0.999981 + . ID=CGI_10007338; scaffold42618 GLEAN mRNA 39630 45757 0.999981 + . ID=CGI_10007338; scaffold42618 TRF Tandem_Repeat 47699 47731 66 + . . scaffold42618 GLEAN promoter 54034 55033 0.742203 + . ID=CGI_10007339; scaffold42618 GLEAN mRNA 55034 58248 0.742203 + . ID=CGI_10007339; scaffold42618 GLEAN promoter 60890 61889 0.510041 + . ID=CGI_10007340; scaffold42618 GLEAN mRNA 61890 73740 0.510041 + . ID=CGI_10007340; scaffold42618 TRF Tandem_Repeat 64395 64442 96 + . . scaffold42618 TRF Tandem_Repeat 72521 72570 91 + . . scaffold42618 WUBlastX LTR_Gypsy 93740 93781 21 - . . scaffold42618 WUBlastX LTR_Gypsy 93852 94094 25 - . . scaffold42618 WUBlastX LTR_Gypsy 93942 94094 34 - . . scaffold42618 WUBlastX LTR_Gypsy 94099 94605 143 - . . scaffold42618 WUBlastX LTR_Gypsy 94309 94851 148 - . . scaffold42618 WUBlastX LTR_Gypsy 94309 94569 170 - . . scaffold42618 WUBlastX LTR_Gypsy 94656 95018 157 - . . scaffold42618 WUBlastX LTR_Gypsy 95027 95614 129 - . . scaffold42618 WUBlastX LTR_Gypsy 95159 95614 256 - . . scaffold42618 WUBlastX LTR_Gypsy 95584 95835 127 - . . scaffold42618 WUBlastX LTR_Gypsy 95608 96291 107 - . . scaffold42618 WUBlastX LTR_Gypsy 96076 96339 23 - . . scaffold42618 WUBlastX LTR_Gypsy 96372 96887 144 - . . scaffold42618 WUBlastX LTR_Gypsy 96429 96845 323 - . . scaffold42618 WUBlastX LTR_DIRS 114008 114469 184 + . . scaffold42618 WUBlastX LTR_DIRS 114453 114569 31 + . . scaffold42618 WUBlastX LTR_DIRS 114617 114874 162 + . . scaffold42618 WUBlastX LTR_DIRS 114867 116066 360 + . . scaffold42618 TRF Tandem_Repeat 118243 118936 1055 + . . scaffold42618 TRF Tandem_Repeat 121748 121786 51 + . . scaffold42618 TRF Tandem_Repeat 130229 130896 686 + . . scaffold42618 TRF Tandem_Repeat 144438 144484 78 + . . scaffold42618 TRF Tandem_Repeat 144443 144485 65 + . . scaffold42618 TRF Tandem_Repeat 146024 146051 56 + . . scaffold42618 GLEAN mRNA 149541 157533 1 - . ID=CGI_10007341; scaffold42618 TRF Tandem_Repeat 156679 156731 106 + . . scaffold42618 GLEAN promoter 156963 157962 0.499838 + . ID=CGI_10007342; scaffold42618 GLEAN promoter 157534 158533 1 - . ID=CGI_10007341; scaffold42618 GLEAN mRNA 157963 164052 0.499838 + . ID=CGI_10007342; scaffold42618 GLEAN mRNA 158702 172761 0.852366 - . ID=CGI_10007343; scaffold42618 GLEAN promoter 172762 173761 0.852366 - . ID=CGI_10007343; scaffold42634 GLEAN mRNA 4621 6568 0.99841 - . ID=CGI_10007344; scaffold42634 GLEAN promoter 6569 7568 0.99841 - . ID=CGI_10007344; scaffold42634 TRF Tandem_Repeat 10567 10622 112 + . . scaffold42634 WUBlastX LINE_CR1-L2 10853 11488 37 + . . scaffold42634 WUBlastX LINE_L2 10982 11488 110 + . . scaffold42634 GLEAN mRNA 17712 21724 0.889922 - . ID=CGI_10007345; scaffold42634 TRF Tandem_Repeat 21562 21620 118 + . . scaffold42634 GLEAN promoter 21725 22724 0.889922 - . ID=CGI_10007345; scaffold42634 TRF Tandem_Repeat 23883 23917 70 + . . scaffold42634 GLEAN promoter 26900 27899 0.406453 + . ID=CGI_10007346; scaffold42634 GLEAN mRNA 27900 32160 0.406453 + . ID=CGI_10007346; scaffold42634 GLEAN promoter 31186 32185 0.250055 + . ID=CGI_10007347; scaffold42634 GLEAN mRNA 32186 72012 0.250055 + . ID=CGI_10007347; scaffold42634 TRF Tandem_Repeat 34378 34746 459 + . . scaffold42634 TRF Tandem_Repeat 49855 49889 52 + . . scaffold42634 TRF Tandem_Repeat 61437 61498 81 + . . scaffold42634 TRF Tandem_Repeat 75931 77305 1838 + . . scaffold42634 TRF Tandem_Repeat 77467 77536 79 + . . scaffold42634 GLEAN mRNA 77607 79381 1 - . ID=CGI_10007348; scaffold42634 GLEAN promoter 79382 80381 1 - . ID=CGI_10007348; scaffold42634 TRF Tandem_Repeat 85369 85441 146 + . . scaffold42634 GLEAN promoter 86860 87859 0.999999 + . ID=CGI_10007349; scaffold42634 GLEAN mRNA 87860 90886 0.999999 + . ID=CGI_10007349; scaffold42634 GLEAN mRNA 95010 95570 0.481511 - . ID=CGI_10007350; scaffold42634 GLEAN promoter 95571 96570 0.481511 - . ID=CGI_10007350; scaffold42634 TRF Tandem_Repeat 96691 96722 64 + . . scaffold42634 TRF Tandem_Repeat 118009 118046 76 + . . scaffold42634 WUBlastX LTR_Gypsy 123490 127368 2359 + . . scaffold42634 WUBlastX DNA_TcMar-Fot1 150064 150570 109 + . . scaffold42634 WUBlastX DNA_TcMar-Fot1 150196 150900 134 + . . scaffold42634 WUBlastX DNA_TcMar-Fot1 150256 150627 163 + . . scaffold42634 WUBlastX DNA_TcMar-Fot1 150256 150834 137 + . . scaffold42634 TRF Tandem_Repeat 151269 151326 80 + . . scaffold42634 TRF Tandem_Repeat 152731 152804 148 + . . scaffold42634 WUBlastX LINE_L2 153876 154595 97 + . . scaffold42634 WUBlastX LINE_RTE-X 154053 154847 537 + . . scaffold42634 WUBlastX LINE_Jockey 155196 155261 28 + . . scaffold42634 WUBlastX LINE_CR1 155196 155234 29 + . . scaffold42634 GLEAN mRNA 156454 156717 0.999372 - . ID=CGI_10007351; scaffold42634 GLEAN promoter 156718 157717 0.999372 - . ID=CGI_10007351; scaffold42634 TRF Tandem_Repeat 165208 165235 56 + . . scaffold42634 WUBlastX DNA_PiggyBac 174260 174727 232 - . . scaffold42640 GLEAN promoter 16298 17297 0.479902 + . ID=CGI_10007371; scaffold42640 GLEAN mRNA 17298 20646 0.479902 + . ID=CGI_10007371; scaffold42640 GLEAN promoter 20265 21264 0.730339 + . ID=CGI_10007372; scaffold42640 TRF Tandem_Repeat 20282 20321 71 + . . scaffold42640 GLEAN mRNA 21265 29619 0.730339 + . ID=CGI_10007372; scaffold42640 GLEAN promoter 31527 32526 0.996819 + . ID=CGI_10007373; scaffold42640 GLEAN mRNA 32527 32952 0.996819 + . ID=CGI_10007373; scaffold42640 GLEAN mRNA 35465 48851 0.999998 - . ID=CGI_10007374; scaffold42640 TRF Tandem_Repeat 40677 40743 89 + . . scaffold42640 GLEAN promoter 48852 49851 0.999998 - . ID=CGI_10007374; scaffold42640 TRF Tandem_Repeat 49746 49799 108 + . . scaffold42640 WUBlastX LINE_L2 50297 50533 81 - . . scaffold42640 WUBlastX LINE_L2 50303 50677 67 - . . scaffold42640 TRF Tandem_Repeat 51135 51162 56 + . . scaffold42640 GLEAN mRNA 61437 72558 0.999999 - . ID=CGI_10007376; scaffold42640 GLEAN promoter 72559 73558 0.999999 - . ID=CGI_10007376; scaffold42640 GLEAN promoter 73731 74730 1 + . ID=CGI_10007377; scaffold42640 GLEAN mRNA 74731 78379 1 + . ID=CGI_10007377; scaffold42640 TRF Tandem_Repeat 78058 78129 121 + . . scaffold42640 TRF Tandem_Repeat 94514 94555 57 + . . scaffold42640 TRF Tandem_Repeat 102379 102420 84 + . . scaffold42640 TRF Tandem_Repeat 103040 103081 75 + . . scaffold42640 GLEAN promoter 103544 104543 1 + . ID=CGI_10007378; scaffold42640 TRF Tandem_Repeat 104439 104491 52 + . . scaffold42640 GLEAN mRNA 104544 104939 1 + . ID=CGI_10007378; scaffold42640 TRF Tandem_Repeat 123820 123866 94 + . . scaffold42640 GLEAN promoter 146886 147885 0.965908 + . ID=CGI_10007379; scaffold42640 GLEAN mRNA 147886 148122 0.965908 + . ID=CGI_10007379; scaffold42640 GLEAN mRNA 147937 157184 0.993369 - . ID=CGI_10007380; scaffold42640 TRF Tandem_Repeat 149985 150029 90 + . . scaffold42640 TRF Tandem_Repeat 150163 150207 90 + . . scaffold42640 GLEAN promoter 157185 158184 0.993369 - . ID=CGI_10007380; scaffold42640 GLEAN promoter 157564 158563 1 + . ID=CGI_10007381; scaffold42640 GLEAN mRNA 158564 164320 1 + . ID=CGI_10007381; scaffold42640 TRF Tandem_Repeat 159300 159384 83 + . . scaffold42640 TRF Tandem_Repeat 161562 161625 128 + . . scaffold42640 TRF Tandem_Repeat 167454 167562 114 + . . scaffold42640 GLEAN promoter 168597 169596 0.999351 + . ID=CGI_10007382; scaffold42640 GLEAN mRNA 169597 177391 0.999351 + . ID=CGI_10007382; scaffold42640 TRF Tandem_Repeat 170429 170464 72 + . . scaffold42640 TRF Tandem_Repeat 172008 172054 94 + . . scaffold42640 TRF Tandem_Repeat 172124 172181 107 + . . scaffold42640 TRF Tandem_Repeat 173084 173137 65 + . . scaffold42648 GLEAN promoter 1 808 1 + . ID=CGI_10007383; scaffold42648 GLEAN mRNA 809 11820 1 + . ID=CGI_10007383; scaffold42648 TRF Tandem_Repeat 9573 9617 72 + . . scaffold42648 TRF Tandem_Repeat 9573 9620 51 + . . scaffold42648 TRF Tandem_Repeat 16859 17355 348 + . . scaffold42648 TRF Tandem_Repeat 18042 18096 101 + . . scaffold42648 TRF Tandem_Repeat 18257 18308 104 + . . scaffold42648 GLEAN promoter 25798 26797 1 + . ID=CGI_10007384; scaffold42648 GLEAN mRNA 26798 28369 1 + . ID=CGI_10007384; scaffold42648 GLEAN promoter 29808 30807 0.999351 + . ID=CGI_10007385; scaffold42648 GLEAN mRNA 30808 37865 0.999351 + . ID=CGI_10007385; scaffold42648 TRF Tandem_Repeat 33561 33721 77 + . . scaffold42648 TRF Tandem_Repeat 33625 33740 187 + . . scaffold42648 TRF Tandem_Repeat 43339 43577 167 + . . scaffold42648 GLEAN mRNA 43558 51491 0.648316 - . ID=CGI_10007386; scaffold42648 GLEAN promoter 51492 52491 0.648316 - . ID=CGI_10007386; scaffold42648 TRF Tandem_Repeat 51984 52041 116 + . . scaffold42648 WUBlastX LINE_CR1 66356 66496 60 - . . scaffold42648 WUBlastX LINE_CR1 66595 66648 30 - . . scaffold42648 WUBlastX LINE_CR1-L2 66656 66694 27 - . . scaffold42648 WUBlastX LINE_CR1 66656 66712 26 - . . scaffold42648 GLEAN promoter 67440 68439 0.999993 + . ID=CGI_10007387; scaffold42648 GLEAN mRNA 68440 71668 0.999993 + . ID=CGI_10007387; scaffold42648 GLEAN mRNA 86529 94031 0.999998 - . ID=CGI_10007388; scaffold42648 TRF Tandem_Repeat 87260 87299 80 + . . scaffold42648 TRF Tandem_Repeat 90898 90961 87 + . . scaffold42648 TRF Tandem_Repeat 91599 91721 131 + . . scaffold42648 TRF Tandem_Repeat 91813 91880 82 + . . scaffold42648 TRF Tandem_Repeat 93394 93456 62 + . . scaffold42648 GLEAN promoter 94032 95031 0.999998 - . ID=CGI_10007388; scaffold42648 TRF Tandem_Repeat 99165 99212 55 + . . scaffold42648 GLEAN mRNA 103660 110096 0.999317 - . ID=CGI_10007389; scaffold42648 GLEAN promoter 110097 111096 0.999317 - . ID=CGI_10007389; scaffold42648 GLEAN promoter 110130 111129 0.988057 + . ID=CGI_10007390; scaffold42648 GLEAN mRNA 111130 113110 0.988057 + . ID=CGI_10007390; scaffold42648 GLEAN mRNA 113950 114126 0.999968 - . ID=CGI_10007391; scaffold42648 WUBlastX DNA_Harbinger 114025 114477 233 - . . scaffold42648 GLEAN promoter 114127 115126 0.999968 - . ID=CGI_10007391; scaffold42648 WUBlastX DNA_Harbinger 114842 115054 28 - . . scaffold42648 WUBlastX DNA_Harbinger 114875 115048 107 - . . scaffold42648 WUBlastX DNA_Harbinger 115509 115778 35 - . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 116773 117045 51 - . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 116806 117036 68 - . . scaffold42648 TRF Tandem_Repeat 117749 117776 56 + . . scaffold42648 WUBlastX DNA_IS4EU 118742 118915 76 - . . scaffold42648 WUBlastX DNA_Kolobok-IS4 118936 119415 196 - . . scaffold42648 WUBlastX DNA_Kolobok-IS4 120039 120179 50 + . . scaffold42648 WUBlastX DNA_IS4EU 120173 120520 207 + . . scaffold42648 WUBlastX DNA_IS4EU 120194 120580 174 + . . scaffold42648 WUBlastX DNA_IS4EU 120583 120732 74 + . . scaffold42648 WUBlastX DNA_hAT-Tip100 121795 122100 73 - . . scaffold42648 WUBlastX DNA_hAT-Tip100 121858 122172 205 - . . scaffold42648 WUBlastX DNA_hAT-Tip100 122967 123389 307 - . . scaffold42648 WUBlastX DNA_hAT-Tip100 123400 124236 305 - . . scaffold42648 TRF Tandem_Repeat 124678 124717 80 + . . scaffold42648 GLEAN mRNA 125482 125730 0.776776 - . ID=CGI_10007392; scaffold42648 GLEAN promoter 125731 126730 0.776776 - . ID=CGI_10007392; scaffold42648 WUBlastX DNA_Zator 133038 133271 66 - . . scaffold42648 WUBlastX DNA_Zator 133410 133991 194 - . . scaffold42648 WUBlastX DNA_Zator 134003 134932 332 - . . scaffold42648 GLEAN mRNA 137175 137537 0.618227 - . ID=CGI_10007393; scaffold42648 GLEAN promoter 137538 138537 0.618227 - . ID=CGI_10007393; scaffold42648 TRF Tandem_Repeat 138012 138056 56 + . . scaffold42648 WUBlastX DNA_Maverick 155269 155706 222 + . . scaffold42648 WUBlastX DNA_Maverick 155740 155880 35 + . . scaffold42648 WUBlastX DNA_Maverick 155773 155982 162 + . . scaffold42648 WUBlastX DNA_Maverick 155980 156495 132 + . . scaffold42648 WUBlastX DNA_Maverick 156391 157236 346 + . . scaffold42648 WUBlastX DNA_Maverick 157254 157460 77 + . . scaffold42648 WUBlastX DNA_Maverick 157257 157562 70 + . . scaffold42648 GLEAN promoter 157871 158870 0.59015 + . ID=CGI_10007394; scaffold42648 TRF Tandem_Repeat 158067 158199 169 + . . scaffold42648 GLEAN mRNA 158871 159137 0.59015 + . ID=CGI_10007394; scaffold42648 GLEAN mRNA 167771 174774 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 168524 169135 80 - . . scaffold42648 WUBlastX LTR_Gypsy 168626 169135 98 - . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 168725 169135 236 - . . scaffold42648 WUBlastX LTR_Gypsy 169155 169568 409 - . . scaffold42648 WUBlastX LTR_Gypsy 169155 169784 244 - . . scaffold42648 WUBlastX LTR_Pao 170105 170170 21 - . . scaffold42648 WUBlastX LTR_Pao 170521 170718 94 - . . scaffold42648 WUBlastX LTR_Pao 170554 172209 443 - . . scaffold42648 WUBlastX LTR_Pao 170554 171708 785 - . . scaffold42648 WUBlastX LTR_Pao 172099 172266 141 - . . scaffold42648 WUBlastX LTR_Pao 172245 172892 263 - . . scaffold42648 WUBlastX LTR_Pao 172245 172646 281 - . . scaffold42648 WUBlastX LTR_Pao 172892 174289 686 - . . scaffold42648 WUBlastX LTR_Pao 173318 174499 37 - . . scaffold42648 GLEAN promoter 174775 175774 0.98388 - . ID=CGI_10007395; scaffold42648 WUBlastX LTR_Gypsy 175437 175757 46 - . . scaffold42648 WUBlastX LTR_Gypsy 175500 175706 69 - . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 175563 176684 327 - . . scaffold42648 WUBlastX LTR_Gypsy 175734 176678 353 - . . scaffold42648 WUBlastX LTR_Gypsy-Cigr 176079 176678 514 - . . scaffold42648 WUBlastX LTR_Gypsy-Gmr1 176136 176798 320 - . . scaffold42656 WUBlastX LINE_Penelope 45 191 42 + . . scaffold42656 WUBlastX LINE_Penelope 78 215 46 + . . scaffold42656 WUBlastX LINE_Penelope 205 582 210 + . . scaffold42656 WUBlastX LINE_Penelope 510 941 177 + . . scaffold42656 WUBlastX LINE_Penelope 1759 1899 48 + . . scaffold42656 WUBlastX LINE_Penelope 1759 1947 22 + . . scaffold42656 TRF Tandem_Repeat 7150 7284 56 + . . scaffold42656 TRF Tandem_Repeat 7311 7375 62 + . . scaffold42656 WUBlastX LINE_RTE-BovB 31249 31860 211 + . . scaffold42656 WUBlastX LINE_RTE-BovB 31821 32051 136 + . . scaffold42656 WUBlastX LINE_RTE-BovB 31821 32141 59 + . . scaffold42656 WUBlastX LINE_RTE-BovB 32122 32400 102 + . . scaffold42656 WUBlastX LINE_RTE-BovB 32137 32361 123 + . . scaffold42656 WUBlastX LINE_RTE-BovB 32346 32480 20 + . . scaffold42656 TRF Tandem_Repeat 53658 53707 66 + . . scaffold42656 TRF Tandem_Repeat 55043 56523 2120 + . . scaffold42656 TRF Tandem_Repeat 56702 56750 53 + . . scaffold42656 GLEAN mRNA 57925 65294 1 - . ID=CGI_10007413; scaffold42656 WUBlastX LINE_L1-Tx1 62604 62951 38 - . . scaffold42656 WUBlastX LINE_L1-Tx1 62733 62993 40 - . . scaffold42656 WUBlastX LINE_L1-Tx1 63248 63796 119 - . . scaffold42656 WUBlastX LINE_L1-Tx1 63780 63860 25 - . . scaffold42656 WUBlastX LINE_L1-Tx1 64408 64662 82 - . . scaffold42656 TRF Tandem_Repeat 65017 65064 96 + . . scaffold42656 GLEAN promoter 65295 66294 1 - . ID=CGI_10007413; scaffold42656 TRF Tandem_Repeat 73942 73980 51 + . . scaffold42656 GLEAN promoter 81644 82643 0.999337 + . ID=CGI_10007414; scaffold42656 GLEAN mRNA 82644 84314 0.999337 + . ID=CGI_10007414; scaffold42656 TRF Tandem_Repeat 87346 87484 154 + . . scaffold42656 WUBlastX DNA_Maverick 88383 89468 685 - . . scaffold42656 WUBlastX LTR_ERVK 89403 89546 35 - . . scaffold42656 TRF Tandem_Repeat 95987 96125 154 + . . scaffold42656 TRF Tandem_Repeat 96395 96431 67 + . . scaffold42656 GLEAN mRNA 97324 103656 1 - . ID=CGI_10007415; scaffold42656 WUBlastX LINE_L1-Tx1 99827 100378 246 + . . scaffold42656 WUBlastX LINE_L1 99827 100510 223 + . . scaffold42656 WUBlastX LINE_L1-Tx1 100474 101340 70 + . . scaffold42656 GLEAN promoter 103657 104656 1 - . ID=CGI_10007415; scaffold42656 GLEAN mRNA 107216 110353 1 - . ID=CGI_10007416; scaffold42656 GLEAN promoter 110354 111353 1 - . ID=CGI_10007416; scaffold42656 GLEAN mRNA 112193 114215 1 - . ID=CGI_10007417; scaffold42656 TRF Tandem_Repeat 113806 113855 100 + . . scaffold42656 GLEAN promoter 114216 115215 1 - . ID=CGI_10007417; scaffold42656 TRF Tandem_Repeat 115391 115443 97 + . . scaffold42656 GLEAN mRNA 115803 120427 1 - . ID=CGI_10007418; scaffold42656 GLEAN promoter 120428 121427 1 - . ID=CGI_10007418; scaffold42656 TRF Tandem_Repeat 123357 123401 90 + . . scaffold42656 WUBlastX LINE_Penelope 125455 125757 64 + . . scaffold42656 WUBlastX DNA_MuDR 129239 129631 85 + . . scaffold42656 WUBlastX DNA_MuDR 129656 130072 70 + . . scaffold42656 WUBlastX DNA_MuDR 130170 130268 37 + . . scaffold42656 TRF Tandem_Repeat 141924 142188 253 + . . scaffold42656 TRF Tandem_Repeat 141924 142188 253 + . . scaffold42656 TRF Tandem_Repeat 142850 143091 269 + . . scaffold42656 TRF Tandem_Repeat 142850 143089 257 + . . scaffold42656 TRF Tandem_Repeat 142858 143091 253 + . . scaffold42656 TRF Tandem_Repeat 143246 144044 1384 + . . scaffold42656 WUBlastX LINE_Penelope 146299 146556 41 - . . scaffold42656 WUBlastX DNA_Crypton 147136 147327 76 + . . scaffold42656 WUBlastX DNA_Crypton 147285 147845 201 + . . scaffold42656 GLEAN mRNA 148895 177088 0.417801 - . ID=CGI_10007419; scaffold42656 WUBlastX DNA_Harbinger 167056 167313 56 + . . scaffold42656 TRF Tandem_Repeat 168729 168771 77 + . . scaffold42656 TRF Tandem_Repeat 170111 171339 1639 + . . scaffold42656 GLEAN promoter 172036 173035 0.618241 + . ID=CGI_10007420; scaffold42656 TRF Tandem_Repeat 172547 172588 59 + . . scaffold42656 GLEAN mRNA 173036 173350 0.618241 + . ID=CGI_10007420; scaffold42656 TRF Tandem_Repeat 174928 176428 1536 + . . scaffold42656 TRF Tandem_Repeat 174935 176428 1436 + . . scaffold42656 TRF Tandem_Repeat 174935 176428 1610 + . . scaffold42656 GLEAN promoter 177089 178088 0.417801 - . ID=CGI_10007419; scaffold42656 WUBlastX DNA_Zator 178282 178416 23 + . . scaffold42656 WUBlastX DNA_Zator 178579 178842 80 + . . scaffold42662 TRF Tandem_Repeat 1 342 585 + . . scaffold42662 GLEAN mRNA 283 10608 1 - . ID=CGI_10007449; scaffold42662 TRF Tandem_Repeat 2179 2236 116 + . . scaffold42662 GLEAN promoter 2969 3968 0.997381 + . ID=CGI_10007450; scaffold42662 GLEAN mRNA 3969 12812 0.997381 + . ID=CGI_10007450; scaffold42662 GLEAN promoter 10609 11608 1 - . ID=CGI_10007449; scaffold42662 GLEAN promoter 11877 12876 1 + . ID=CGI_10007451; scaffold42662 GLEAN mRNA 12877 14492 1 + . ID=CGI_10007451; scaffold42662 GLEAN promoter 14585 15584 1 + . ID=CGI_10007452; scaffold42662 GLEAN mRNA 15585 17262 1 + . ID=CGI_10007452; scaffold42662 GLEAN mRNA 17813 22212 1 - . ID=CGI_10007453; scaffold42662 GLEAN promoter 22213 23212 1 - . ID=CGI_10007453; scaffold42662 GLEAN promoter 25317 26316 0.998868 + . ID=CGI_10007454; scaffold42662 GLEAN mRNA 26317 39160 0.998868 + . ID=CGI_10007454; scaffold42662 TRF Tandem_Repeat 29847 29871 50 + . . scaffold42662 TRF Tandem_Repeat 36754 36904 225 + . . scaffold42662 TRF Tandem_Repeat 36929 37107 261 + . . scaffold42662 GLEAN mRNA 41733 58210 0.492762 - . ID=CGI_10007455; scaffold42662 TRF Tandem_Repeat 49057 49102 65 + . . scaffold42662 GLEAN promoter 51858 52857 0.99235 + . ID=CGI_10007456; scaffold42662 GLEAN mRNA 52858 59000 0.99235 + . ID=CGI_10007456; scaffold42662 GLEAN promoter 58211 59210 0.492762 - . ID=CGI_10007455; scaffold42662 TRF Tandem_Repeat 61155 61407 321 + . . scaffold42662 TRF Tandem_Repeat 61157 61417 290 + . . scaffold42662 TRF Tandem_Repeat 62082 62255 215 + . . scaffold42662 GLEAN mRNA 63625 64722 1 - . ID=CGI_10007457; scaffold42662 GLEAN promoter 64723 65722 1 - . ID=CGI_10007457; scaffold42662 TRF Tandem_Repeat 66129 66175 94 + . . scaffold42662 GLEAN mRNA 68883 113325 0.960783 - . ID=CGI_10007458; scaffold42662 GLEAN promoter 83145 84144 0.920531 + . ID=CGI_10007459; scaffold42662 GLEAN mRNA 84145 92666 0.920531 + . ID=CGI_10007459; scaffold42662 GLEAN promoter 113326 114325 0.960783 - . ID=CGI_10007458; scaffold42662 GLEAN mRNA 123503 132574 1 - . ID=CGI_10007460; scaffold42662 TRF Tandem_Repeat 128186 128320 157 + . . scaffold42662 GLEAN promoter 132575 133574 1 - . ID=CGI_10007460; scaffold42662 TRF Tandem_Repeat 132597 132646 100 + . . scaffold42662 GLEAN mRNA 138333 149497 0.668586 - . ID=CGI_10007461; scaffold42662 GLEAN promoter 149498 150497 0.668586 - . ID=CGI_10007461; scaffold42662 TRF Tandem_Repeat 152076 152201 135 + . . scaffold42662 TRF Tandem_Repeat 155018 155087 140 + . . scaffold42662 GLEAN mRNA 158132 158986 1 - . ID=CGI_10007462; scaffold42662 GLEAN promoter 158987 159986 1 - . ID=CGI_10007462; scaffold42662 WUBlastX LINE_RTE-X 162231 162704 90 + . . scaffold42662 WUBlastX LINE_RTE-X 162231 162599 97 + . . scaffold42662 GLEAN promoter 165159 166158 0.999913 + . ID=CGI_10007463; scaffold42662 TRF Tandem_Repeat 165434 165511 129 + . . scaffold42662 TRF Tandem_Repeat 165660 165832 269 + . . scaffold42662 GLEAN mRNA 166159 172625 0.999913 + . ID=CGI_10007463; scaffold42662 TRF Tandem_Repeat 167340 167393 108 + . . scaffold42662 TRF Tandem_Repeat 169512 169555 72 + . . scaffold42662 TRF Tandem_Repeat 169895 169938 88 + . . scaffold42662 TRF Tandem_Repeat 170003 170049 85 + . . scaffold42662 TRF Tandem_Repeat 173328 174120 796 + . . scaffold42662 TRF Tandem_Repeat 175770 175813 56 + . . scaffold42662 TRF Tandem_Repeat 175775 175829 60 + . . scaffold42662 WUBlastX LTR_Gypsy 180934 181548 189 + . . scaffold42662 WUBlastX LTR_Gypsy 181018 181539 209 + . . scaffold42674 GLEAN promoter 6272 7271 0.393192 + . ID=CGI_10007437; scaffold42674 GLEAN mRNA 7272 9941 0.393192 + . ID=CGI_10007437; scaffold42674 TRF Tandem_Repeat 12637 12699 126 + . . scaffold42674 TRF Tandem_Repeat 16262 16492 94 + . . scaffold42674 TRF Tandem_Repeat 16271 16462 221 + . . scaffold42674 TRF Tandem_Repeat 21200 21241 84 + . . scaffold42674 WUBlastX LINE_CR1-L2 22114 22266 80 - . . scaffold42674 WUBlastX LINE_CR1-L2 22156 22266 91 - . . scaffold42674 WUBlastX LINE_L2 22263 22700 274 - . . scaffold42674 WUBlastX LINE_CR1 22290 22811 129 - . . scaffold42674 WUBlastX LINE_L2 22768 23499 102 - . . scaffold42674 WUBlastX LINE_L2 23528 24052 239 - . . scaffold42674 WUBlastX LINE_L2 23552 24169 54 - . . scaffold42674 WUBlastX LINE_L2 26321 26629 94 - . . scaffold42674 TRF Tandem_Repeat 27989 28018 60 + . . scaffold42674 GLEAN promoter 38499 39498 0.991247 + . ID=CGI_10007438; scaffold42674 GLEAN mRNA 39499 44384 0.991247 + . ID=CGI_10007438; scaffold42674 TRF Tandem_Repeat 41461 41485 50 + . . scaffold42674 GLEAN promoter 43651 44650 1 + . ID=CGI_10007439; scaffold42674 GLEAN mRNA 44651 50575 1 + . ID=CGI_10007439; scaffold42674 GLEAN promoter 51347 52346 1 + . ID=CGI_10007440; scaffold42674 GLEAN mRNA 52347 58294 1 + . ID=CGI_10007440; scaffold42674 TRF Tandem_Repeat 55225 56189 1587 + . . scaffold42674 TRF Tandem_Repeat 58013 58136 166 + . . scaffold42674 TRF Tandem_Repeat 58561 58594 52 + . . scaffold42674 TRF Tandem_Repeat 63348 63386 78 + . . scaffold42674 WUBlastX LINE_RTE-X 64508 64735 32 - . . scaffold42674 WUBlastX LINE_RTE-X 64658 64738 36 - . . scaffold42674 WUBlastX LINE_RTE-X 64773 66320 479 - . . scaffold42674 WUBlastX LINE_RTE-X 65876 66847 61 - . . scaffold42674 WUBlastX LINE_I-Nimb 66093 66365 100 - . . scaffold42674 WUBlastX LINE_RTE-X 66958 67017 20 - . . scaffold42674 WUBlastX LINE_RTE-X 67299 67706 42 - . . scaffold42674 WUBlastX LINE_RTE-X 67407 67691 68 - . . scaffold42674 WUBlastX LINE_CR1 68037 68072 29 - . . scaffold42674 GLEAN promoter 74951 75950 0.488756 + . ID=CGI_10007441; scaffold42674 GLEAN mRNA 75951 89776 0.488756 + . ID=CGI_10007441; scaffold42674 TRF Tandem_Repeat 76604 76647 88 + . . scaffold42674 WUBlastX LINE_L1-Tx1 88622 89416 168 + . . scaffold42674 WUBlastX LINE_L1-Tx1 88754 89440 319 + . . scaffold42674 WUBlastX LINE_L1-Tx1 89208 89600 73 + . . scaffold42674 WUBlastX LINE_L1 89427 89645 45 + . . scaffold42674 WUBlastX LINE_RTE-BovB 90092 90178 25 + . . scaffold42674 WUBlastX LINE_L1-Tx1 93001 93096 24 + . . scaffold42674 WUBlastX LINE_L1-Tx1 93267 93716 193 + . . scaffold42674 WUBlastX LINE_L1-Tx1 93267 94469 36 + . . scaffold42674 WUBlastX LINE_L1-Tx1 93273 93941 127 + . . scaffold42674 WUBlastX LINE_L1-Tx1 93983 94135 50 + . . scaffold42674 WUBlastX LINE_RTE-X 95449 95946 206 - . . scaffold42674 WUBlastX LINE_RTE-X 95687 96694 237 - . . scaffold42674 WUBlastX LINE_RTE-X 95906 96703 292 - . . scaffold42674 TRF Tandem_Repeat 98262 98295 68 + . . scaffold42674 GLEAN mRNA 102061 109377 0.998989 - . ID=CGI_10007442; scaffold42674 TRF Tandem_Repeat 107300 107457 246 + . . scaffold42674 GLEAN promoter 109378 110377 0.998989 - . ID=CGI_10007442; scaffold42674 GLEAN promoter 110170 111169 1 + . ID=CGI_10007443; scaffold42674 GLEAN mRNA 111170 121020 1 + . ID=CGI_10007443; scaffold42674 GLEAN mRNA 121263 132414 1 - . ID=CGI_10007444; scaffold42674 TRF Tandem_Repeat 129070 129119 100 + . . scaffold42674 TRF Tandem_Repeat 131923 131978 112 + . . scaffold42674 GLEAN promoter 132358 133357 1 + . ID=CGI_10007445; scaffold42674 GLEAN promoter 132415 133414 1 - . ID=CGI_10007444; scaffold42674 GLEAN mRNA 133358 138447 1 + . ID=CGI_10007445; scaffold42674 GLEAN promoter 138181 139180 1 + . ID=CGI_10007446; scaffold42674 GLEAN mRNA 139181 139402 1 + . ID=CGI_10007446; scaffold42674 GLEAN mRNA 139728 143555 1 - . ID=CGI_10007447; scaffold42674 TRF Tandem_Repeat 142406 142450 90 + . . scaffold42674 GLEAN promoter 143556 144555 1 - . ID=CGI_10007447; scaffold42674 WUBlastX DNA_hAT-Tip100 148753 148965 105 - . . scaffold42674 WUBlastX DNA_hAT-Tip100 148756 149016 75 - . . scaffold42674 WUBlastX LINE_CR1-L2 152948 153400 24 + . . scaffold42674 WUBlastX LINE_CR1-L2 153062 153415 44 + . . scaffold42674 TRF Tandem_Repeat 166815 167118 274 + . . scaffold42674 TRF Tandem_Repeat 166815 167118 283 + . . scaffold42674 WUBlastX LINE_RTE-BovB 167498 167698 45 + . . scaffold42674 WUBlastX LINE_RTE-BovB 167555 167716 49 + . . scaffold42674 GLEAN promoter 168493 169492 0.544647 + . ID=CGI_10007448; scaffold42674 GLEAN mRNA 169493 180850 0.544647 + . ID=CGI_10007448; scaffold42674 WUBlastX LINE_RTE-X 172423 173298 112 - . . scaffold42674 WUBlastX LINE_RTE-X 172558 173247 266 - . . scaffold42674 WUBlastX LINE_RTE-X 173170 173325 41 - . . scaffold42674 WUBlastX LINE_RTE-BovB 175716 176267 49 - . . scaffold42674 WUBlastX LINE_RTE-X 175725 176180 287 - . . scaffold42674 WUBlastX LINE_RTE-X 177974 178741 206 + . . scaffold42674 WUBlastX LINE_RTE-X 178767 178979 20 + . . scaffold42684 GLEAN promoter 1 115 1 + . ID=CGI_10007475; scaffold42684 GLEAN mRNA 116 566 1 + . ID=CGI_10007475; scaffold42684 GLEAN promoter 8882 9881 0.999907 + . ID=CGI_10007476; scaffold42684 GLEAN mRNA 9882 18125 0.999907 + . ID=CGI_10007476; scaffold42684 TRF Tandem_Repeat 13986 14010 50 + . . scaffold42684 TRF Tandem_Repeat 16716 16741 52 + . . scaffold42684 GLEAN mRNA 19741 23968 0.999999 - . ID=CGI_10007477; scaffold42684 TRF Tandem_Repeat 23450 23492 86 + . . scaffold42684 TRF Tandem_Repeat 23668 23703 72 + . . scaffold42684 GLEAN promoter 23969 24968 0.999999 - . ID=CGI_10007477; scaffold42684 TRF Tandem_Repeat 25929 26417 411 + . . scaffold42684 TRF Tandem_Repeat 26898 27163 349 + . . scaffold42684 GLEAN promoter 27370 28369 0.749088 + . ID=CGI_10007478; scaffold42684 GLEAN mRNA 28370 30346 0.749088 + . ID=CGI_10007478; scaffold42684 TRF Tandem_Repeat 36335 36391 53 + . . scaffold42684 TRF Tandem_Repeat 36337 36432 104 + . . scaffold42684 TRF Tandem_Repeat 36349 36432 105 + . . scaffold42684 TRF Tandem_Repeat 37536 37561 52 + . . scaffold42684 TRF Tandem_Repeat 48695 48720 52 + . . scaffold42684 GLEAN mRNA 50251 66021 0.999964 - . ID=CGI_10007479; scaffold42684 GLEAN promoter 57799 58798 0.998999 + . ID=CGI_10007480; scaffold42684 GLEAN mRNA 58799 62766 0.998999 + . ID=CGI_10007480; scaffold42684 GLEAN promoter 66022 67021 0.999964 - . ID=CGI_10007479; scaffold42684 GLEAN promoter 74072 75071 0.996563 + . ID=CGI_10007481; scaffold42684 GLEAN mRNA 75072 108282 0.996563 + . ID=CGI_10007481; scaffold42684 TRF Tandem_Repeat 82629 82717 81 + . . scaffold42684 TRF Tandem_Repeat 82635 82719 84 + . . scaffold42684 GLEAN mRNA 96579 109149 0.794248 - . ID=CGI_10007482; scaffold42684 GLEAN promoter 108399 109398 0.999676 + . ID=CGI_10007483; scaffold42684 GLEAN promoter 109150 110149 0.794248 - . ID=CGI_10007482; scaffold42684 GLEAN mRNA 109399 119383 0.999676 + . ID=CGI_10007483; scaffold42684 TRF Tandem_Repeat 112664 113369 1130 + . . scaffold42684 TRF Tandem_Repeat 120742 120913 203 + . . scaffold42684 WUBlastX DNA_En-Spm 126610 127422 171 - . . scaffold42684 WUBlastX DNA_En-Spm 126853 127410 195 - . . scaffold42684 GLEAN promoter 130645 131644 0.994209 + . ID=CGI_10007484; scaffold42684 GLEAN mRNA 131645 137197 0.994209 + . ID=CGI_10007484; scaffold42684 GLEAN promoter 141793 142792 0.909301 + . ID=CGI_10007485; scaffold42684 GLEAN mRNA 142793 153624 0.909301 + . ID=CGI_10007485; scaffold42684 GLEAN mRNA 146487 148732 1 - . ID=CGI_10007486; scaffold42684 GLEAN promoter 148733 149732 1 - . ID=CGI_10007486; scaffold42684 TRF Tandem_Repeat 152111 152468 217 + . . scaffold42684 TRF Tandem_Repeat 156233 156344 127 + . . scaffold42684 GLEAN mRNA 161376 175823 0.807283 - . ID=CGI_10007487; scaffold42684 GLEAN promoter 169594 170593 0.86189 + . ID=CGI_10007488; scaffold42684 GLEAN mRNA 170594 182383 0.86189 + . ID=CGI_10007488; scaffold42684 GLEAN promoter 175824 176823 0.807283 - . ID=CGI_10007487; scaffold42684 TRF Tandem_Repeat 177979 178188 330 + . . scaffold42684 TRF Tandem_Repeat 179398 179597 283 + . . scaffold42684 TRF Tandem_Repeat 179422 179588 128 + . . scaffold42684 TRF Tandem_Repeat 181026 181279 235 + . . scaffold42684 TRF Tandem_Repeat 181026 181278 164 + . . scaffold427 GLEAN mRNA 6840 7157 0.998952 - . ID=CGI_10006656; scaffold427 GLEAN promoter 7158 8157 0.998952 - . ID=CGI_10006656; scaffold427 GLEAN mRNA 17989 18306 0.741333 - . ID=CGI_10006657; scaffold427 GLEAN promoter 18307 19306 0.741333 - . ID=CGI_10006657; scaffold427 GLEAN promoter 19339 20338 1 + . ID=CGI_10006658; scaffold427 GLEAN mRNA 20339 27348 1 + . ID=CGI_10006658; scaffold427 TRF Tandem_Repeat 22108 22152 90 + . . scaffold427 TRF Tandem_Repeat 28419 28679 251 + . . scaffold427 TRF Tandem_Repeat 29774 30088 318 + . . scaffold427 TRF Tandem_Repeat 39604 40301 812 + . . scaffold427 TRF Tandem_Repeat 40576 40976 439 + . . scaffold427 TRF Tandem_Repeat 40582 40976 343 + . . scaffold427 GLEAN mRNA 44659 64165 0.934376 - . ID=CGI_10006659; scaffold427 TRF Tandem_Repeat 60926 61007 55 + . . scaffold427 TRF Tandem_Repeat 60967 60999 52 + . . scaffold427 TRF Tandem_Repeat 62884 63742 1211 + . . scaffold427 TRF Tandem_Repeat 62884 63742 1202 + . . scaffold427 GLEAN promoter 64166 65165 0.934376 - . ID=CGI_10006659; scaffold427 GLEAN mRNA 66299 67546 0.734554 - . ID=CGI_10006660; scaffold427 GLEAN promoter 67547 68546 0.734554 - . ID=CGI_10006660; scaffold427 GLEAN mRNA 74413 82948 0.777732 - . ID=CGI_10006661; scaffold427 WUBlastX LTR_Gypsy 76749 79736 2135 + . . scaffold427 WUBlastX LTR_Gypsy 78177 80045 1070 + . . scaffold427 GLEAN promoter 82949 83948 0.777732 - . ID=CGI_10006661; scaffold427 GLEAN promoter 89864 90863 0.59335 + . ID=CGI_10006662; scaffold427 GLEAN mRNA 90864 96127 0.59335 + . ID=CGI_10006662; scaffold427 TRF Tandem_Repeat 103444 103516 137 + . . scaffold427 TRF Tandem_Repeat 146061 146109 98 + . . scaffold427 TRF Tandem_Repeat 149682 149751 96 + . . scaffold427 TRF Tandem_Repeat 149683 149748 80 + . . scaffold42704 GLEAN promoter 1 620 0.991765 + . ID=CGI_10007535; scaffold42704 GLEAN mRNA 621 5722 0.991765 + . ID=CGI_10007535; scaffold42704 TRF Tandem_Repeat 7619 7656 60 + . . scaffold42704 GLEAN promoter 14575 15574 0.358102 + . ID=CGI_10007536; scaffold42704 TRF Tandem_Repeat 15075 15118 88 + . . scaffold42704 GLEAN mRNA 15575 20157 0.358102 + . ID=CGI_10007536; scaffold42704 TRF Tandem_Repeat 17806 17838 59 + . . scaffold42704 TRF Tandem_Repeat 18816 18875 113 + . . scaffold42704 GLEAN promoter 23129 24128 1 + . ID=CGI_10007537; scaffold42704 GLEAN mRNA 24129 26605 1 + . ID=CGI_10007537; scaffold42704 TRF Tandem_Repeat 31745 31795 93 + . . scaffold42704 GLEAN mRNA 38583 40674 1 - . ID=CGI_10007538; scaffold42704 TRF Tandem_Repeat 39757 40085 383 + . . scaffold42704 GLEAN promoter 40675 41674 1 - . ID=CGI_10007538; scaffold42704 WUBlastX LINE_RTE-X 42327 42605 47 - . . scaffold42704 WUBlastX LINE_RTE-X 42384 42611 56 - . . scaffold42704 WUBlastX LINE_RTE-X 42423 42605 63 - . . scaffold42704 WUBlastX LINE_RTE-X 42447 42674 58 - . . scaffold42704 WUBlastX LINE_RTE-X 43688 44209 85 - . . scaffold42704 WUBlastX LINE_RTE-BovB 44057 44203 89 - . . scaffold42704 TRF Tandem_Repeat 46080 46115 63 + . . scaffold42704 GLEAN mRNA 48271 49416 0.503348 - . ID=CGI_10007539; scaffold42704 GLEAN promoter 49417 50416 0.503348 - . ID=CGI_10007539; scaffold42704 GLEAN promoter 54863 55862 0.988654 + . ID=CGI_10007540; scaffold42704 GLEAN mRNA 55863 60049 0.988654 + . ID=CGI_10007540; scaffold42704 WUBlastX DNA_Maverick 63725 63898 80 - . . scaffold42704 WUBlastX DNA_Maverick 63810 64235 107 - . . scaffold42704 WUBlastX DNA_Maverick 64041 64235 121 - . . scaffold42704 WUBlastX DNA_Maverick 64212 64331 61 - . . scaffold42704 WUBlastX DNA_Maverick 64315 65097 289 - . . scaffold42704 WUBlastX DNA_Maverick 64964 65311 173 - . . scaffold42704 WUBlastX DNA_Maverick 67684 67845 77 - . . scaffold42704 WUBlastX DNA_Maverick 67780 67869 47 - . . scaffold42704 TRF Tandem_Repeat 74251 74301 93 + . . scaffold42704 WUBlastX LINE_L1-Tx1 81773 82333 119 - . . scaffold42704 WUBlastX LINE_L1-Tx1 82314 82484 20 - . . scaffold42704 WUBlastX LINE_L1-Tx1 82344 82460 22 - . . scaffold42704 WUBlastX DNA_TcMar-Tc1 86115 86810 327 - . . scaffold42704 WUBlastX DNA_TcMar-Tc1 86837 87154 75 - . . scaffold42704 WUBlastX LINE_CR1 88452 88595 38 - . . scaffold42704 WUBlastX LINE_RTE-X 88736 89662 98 - . . scaffold42704 WUBlastX LINE_L2 89673 89870 26 - . . scaffold42704 WUBlastX LINE_Proto2 89879 89962 27 - . . scaffold42704 WUBlastX LINE_Proto2 90089 90238 22 - . . scaffold42704 WUBlastX LINE_RTE-BovB 90273 90635 31 - . . scaffold42704 WUBlastX LINE_L2-Hydra 90381 90683 60 - . . scaffold42704 WUBlastX LINE_L2 90659 90724 23 - . . scaffold42704 WUBlastX LINE_L2-Hydra 90710 90838 32 - . . scaffold42704 WUBlastX LINE_Proto2 90761 90886 41 - . . scaffold42704 GLEAN mRNA 96754 101527 0.989038 - . ID=CGI_10007541; scaffold42704 GLEAN promoter 101528 102527 0.989038 - . ID=CGI_10007541; scaffold42704 WUBlastX DNA_Kolobok-Hyd 104657 104713 23 - . . scaffold42704 TRF Tandem_Repeat 109522 109612 182 + . . scaffold42704 TRF Tandem_Repeat 120611 120647 74 + . . scaffold42704 TRF Tandem_Repeat 120647 120679 66 + . . scaffold42704 TRF Tandem_Repeat 121331 121384 99 + . . scaffold42704 TRF Tandem_Repeat 122838 122891 108 + . . scaffold42704 TRF Tandem_Repeat 124119 124162 52 + . . scaffold42704 TRF Tandem_Repeat 124120 124154 61 + . . scaffold42704 TRF Tandem_Repeat 126149 126855 692 + . . scaffold42704 WUBlastX LINE_CR1-L2 128672 128989 46 + . . scaffold42704 WUBlastX LINE_Rex-Babar 128792 129115 31 + . . scaffold42704 WUBlastX LINE_CR1 128840 128986 48 + . . scaffold42704 TRF Tandem_Repeat 166070 167794 2243 + . . scaffold42704 TRF Tandem_Repeat 174861 174925 121 + . . scaffold42704 WUBlastX LINE_L1 175063 175500 50 + . . scaffold42704 WUBlastX LINE_L1-Tx1 175129 175770 293 + . . scaffold42704 WUBlastX LINE_L1-Tx1 175719 176255 219 + . . scaffold42704 WUBlastX LINE_L1-Tx1 176207 176653 372 + . . scaffold42704 WUBlastX LINE_L1-Tx1 176652 177227 333 + . . scaffold42704 WUBlastX LINE_L1-Tx1 177434 177532 37 + . . scaffold42704 TRF Tandem_Repeat 177955 178287 263 + . . scaffold42704 TRF Tandem_Repeat 183351 183397 76 + . . scaffold42726 GLEAN promoter 1 655 1 + . ID=CGI_10007564; scaffold42726 GLEAN mRNA 656 1349 1 + . ID=CGI_10007564; scaffold42726 GLEAN promoter 762 1761 1 + . ID=CGI_10007565; scaffold42726 GLEAN mRNA 1762 2682 1 + . ID=CGI_10007565; scaffold42726 TRF Tandem_Repeat 2819 2861 86 + . . scaffold42726 GLEAN mRNA 2982 14808 0.648556 - . ID=CGI_10007566; scaffold42726 TRF Tandem_Repeat 4948 5036 65 + . . scaffold42726 TRF Tandem_Repeat 5861 5933 146 + . . scaffold42726 TRF Tandem_Repeat 6222 6516 373 + . . scaffold42726 TRF Tandem_Repeat 8298 8925 897 + . . scaffold42726 TRF Tandem_Repeat 13436 13493 116 + . . scaffold42726 GLEAN promoter 14809 15808 0.648556 - . ID=CGI_10007566; scaffold42726 GLEAN mRNA 15150 30810 0.535681 - . ID=CGI_10007567; scaffold42726 TRF Tandem_Repeat 21844 21883 80 + . . scaffold42726 TRF Tandem_Repeat 25659 25693 52 + . . scaffold42726 GLEAN promoter 30811 31810 0.535681 - . ID=CGI_10007567; scaffold42726 TRF Tandem_Repeat 33917 33967 102 + . . scaffold42726 TRF Tandem_Repeat 43680 43707 56 + . . scaffold42726 TRF Tandem_Repeat 46809 46901 170 + . . scaffold42726 TRF Tandem_Repeat 59517 59569 97 + . . scaffold42726 GLEAN mRNA 60881 61237 0.999372 - . ID=CGI_10007568; scaffold42726 GLEAN promoter 61238 62237 0.999372 - . ID=CGI_10007568; scaffold42726 TRF Tandem_Repeat 68502 69544 707 + . . scaffold42726 TRF Tandem_Repeat 88288 88331 61 + . . scaffold42726 GLEAN mRNA 91603 107334 1 - . ID=CGI_10007569; scaffold42726 GLEAN promoter 107335 108334 1 - . ID=CGI_10007569; scaffold42726 TRF Tandem_Repeat 107910 107970 113 + . . scaffold42726 TRF Tandem_Repeat 123581 123639 118 + . . scaffold42726 TRF Tandem_Repeat 123932 123962 62 + . . scaffold42726 TRF Tandem_Repeat 124474 124540 89 + . . scaffold42726 WUBlastX LTR_DIRS? 125296 125580 31 - . . scaffold42726 TRF Tandem_Repeat 138016 138140 234 + . . scaffold42726 GLEAN mRNA 147792 152333 0.999646 - . ID=CGI_10007570; scaffold42726 TRF Tandem_Repeat 150377 150548 101 + . . scaffold42726 TRF Tandem_Repeat 150396 150689 256 + . . scaffold42726 TRF Tandem_Repeat 150413 150643 232 + . . scaffold42726 TRF Tandem_Repeat 150429 150687 225 + . . scaffold42726 GLEAN promoter 152334 153333 0.999646 - . ID=CGI_10007570; scaffold42726 WUBlastX DNA_TcMar-Tc1 160111 160725 33 + . . scaffold42726 WUBlastX DNA_TcMar-Tc1 160270 160692 208 + . . scaffold42726 WUBlastX DNA_TcMar-Tc1 160597 160731 40 + . . scaffold42726 WUBlastX DNA_TcMar-Tc1 160743 160997 114 + . . scaffold42726 TRF Tandem_Repeat 162956 162991 72 + . . scaffold42726 GLEAN mRNA 165419 165673 0.996188 - . ID=CGI_10007571; scaffold42726 GLEAN promoter 165674 166673 0.996188 - . ID=CGI_10007571; scaffold42726 TRF Tandem_Repeat 174324 174420 176 + . . scaffold42726 TRF Tandem_Repeat 176540 176775 341 + . . scaffold42726 GLEAN mRNA 177825 184355 0.593391 - . ID=CGI_10007572; scaffold42726 TRF Tandem_Repeat 183529 183778 65 + . . scaffold42726 GLEAN promoter 184356 184828 0.593391 - . ID=CGI_10007572; scaffold42740 TRF Tandem_Repeat 5383 5417 70 + . . scaffold42740 WUBlastX DNA_IS4EU 7871 8527 318 + . . scaffold42740 WUBlastX DNA_IS4EU 8476 8649 72 - . . scaffold42740 WUBlastX DNA_IS4EU 8545 8721 50 - . . scaffold42740 WUBlastX DNA_IS4EU 8848 9021 33 - . . scaffold42740 WUBlastX DNA_Kolobok-IS4 8875 9048 29 - . . scaffold42740 WUBlastX DNA_IS4EU 8875 8946 42 - . . scaffold42740 WUBlastX DNA_IS4EU 9199 9354 27 - . . scaffold42740 WUBlastX DNA_IS4EU 9466 9570 50 - . . scaffold42740 WUBlastX DNA_Kolobok-IS4 9469 9594 29 - . . scaffold42740 TRF Tandem_Repeat 15330 15379 75 + . . scaffold42740 TRF Tandem_Repeat 16884 17791 1341 + . . scaffold42740 TRF Tandem_Repeat 24413 24445 50 + . . scaffold42740 TRF Tandem_Repeat 24797 24831 52 + . . scaffold42740 GLEAN promoter 29864 30863 0.522616 + . ID=CGI_10007607; scaffold42740 GLEAN mRNA 30864 54777 0.522616 + . ID=CGI_10007607; scaffold42740 TRF Tandem_Repeat 37196 37238 68 + . . scaffold42740 TRF Tandem_Repeat 41845 41904 70 + . . scaffold42740 TRF Tandem_Repeat 48759 48794 72 + . . scaffold42740 GLEAN promoter 64305 65304 0.999494 + . ID=CGI_10007608; scaffold42740 GLEAN mRNA 65305 90130 0.999494 + . ID=CGI_10007608; scaffold42740 TRF Tandem_Repeat 65875 65943 138 + . . scaffold42740 TRF Tandem_Repeat 67093 67119 54 + . . scaffold42740 WUBlastX DNA_Harbinger 75309 76163 323 - . . scaffold42740 GLEAN mRNA 75816 93610 0.249736 - . ID=CGI_10007609; scaffold42740 WUBlastX DNA_Harbinger 76121 76294 22 - . . scaffold42740 TRF Tandem_Repeat 76946 76992 94 + . . scaffold42740 WUBlastX DNA_Harbinger 77045 77107 24 - . . scaffold42740 TRF Tandem_Repeat 77231 77321 146 + . . scaffold42740 TRF Tandem_Repeat 77287 77377 98 + . . scaffold42740 TRF Tandem_Repeat 78865 78973 146 + . . scaffold42740 TRF Tandem_Repeat 81923 81961 78 + . . scaffold42740 GLEAN promoter 93611 94610 0.249736 - . ID=CGI_10007609; scaffold42740 GLEAN mRNA 94384 94956 0.999999 - . ID=CGI_10007610; scaffold42740 GLEAN promoter 94957 95956 0.999999 - . ID=CGI_10007610; scaffold42740 GLEAN promoter 96343 97342 0.956547 + . ID=CGI_10007611; scaffold42740 GLEAN mRNA 97343 114084 0.956547 + . ID=CGI_10007611; scaffold42740 GLEAN mRNA 114905 139119 0.464306 - . ID=CGI_10007612; scaffold42740 GLEAN promoter 139120 140119 0.464306 - . ID=CGI_10007612; scaffold42740 TRF Tandem_Repeat 147550 147643 89 + . . scaffold42740 TRF Tandem_Repeat 147737 147863 87 + . . scaffold42740 TRF Tandem_Repeat 147914 148073 128 + . . scaffold42740 TRF Tandem_Repeat 148150 148241 78 + . . scaffold42740 GLEAN promoter 172708 173707 0.971521 + . ID=CGI_10007613; scaffold42740 GLEAN mRNA 173708 179674 0.971521 + . ID=CGI_10007613; scaffold42740 TRF Tandem_Repeat 180607 180660 63 + . . scaffold42754 GLEAN mRNA 1 7415 0.999249 + . ID=CGI_10007669; scaffold42754 TRF Tandem_Repeat 2070 2105 54 + . . scaffold42754 TRF Tandem_Repeat 8329 8406 81 + . . scaffold42754 GLEAN mRNA 15713 17019 0.899599 - . ID=CGI_10007670; scaffold42754 GLEAN promoter 17020 18019 0.899599 - . ID=CGI_10007670; scaffold42754 GLEAN mRNA 24217 28757 0.899307 - . ID=CGI_10007671; scaffold42754 TRF Tandem_Repeat 25847 26064 391 + . . scaffold42754 GLEAN promoter 28758 29757 0.899307 - . ID=CGI_10007671; scaffold42754 WUBlastX LINE_RTE-X 30430 30504 26 - . . scaffold42754 WUBlastX LINE_RTE-X 30594 30848 41 - . . scaffold42754 WUBlastX LINE_RTE-X 30747 31418 45 - . . scaffold42754 WUBlastX LINE_L2 30932 31195 71 - . . scaffold42754 WUBlastX LINE_RTE-X 30974 31231 156 - . . scaffold42754 WUBlastX LINE_RTE-X 30974 31585 94 - . . scaffold42754 TRF Tandem_Repeat 35385 35434 100 + . . scaffold42754 WUBlastX LTR_Ngaro 37032 37529 186 + . . scaffold42754 GLEAN mRNA 37851 41214 0.999991 - . ID=CGI_10007672; scaffold42754 TRF Tandem_Repeat 38223 38363 255 + . . scaffold42754 TRF Tandem_Repeat 41000 41051 104 + . . scaffold42754 GLEAN promoter 41215 42214 0.999991 - . ID=CGI_10007672; scaffold42754 WUBlastX LTR_Ngaro 42649 43146 186 + . . scaffold42754 GLEAN mRNA 43468 54760 0.999988 - . ID=CGI_10007673; scaffold42754 TRF Tandem_Repeat 43840 44140 541 + . . scaffold42754 TRF Tandem_Repeat 45962 46087 80 + . . scaffold42754 TRF Tandem_Repeat 46314 46368 110 + . . scaffold42754 TRF Tandem_Repeat 46768 46849 92 + . . scaffold42754 TRF Tandem_Repeat 47007 47123 112 + . . scaffold42754 TRF Tandem_Repeat 47029 47123 127 + . . scaffold42754 TRF Tandem_Repeat 48699 49077 435 + . . scaffold42754 TRF Tandem_Repeat 48699 49077 468 + . . scaffold42754 TRF Tandem_Repeat 52406 52460 65 + . . scaffold42754 TRF Tandem_Repeat 52413 52466 73 + . . scaffold42754 GLEAN promoter 54761 55760 0.999988 - . ID=CGI_10007673; scaffold42754 WUBlastX LINE_RTE-X 64378 64917 114 + . . scaffold42754 WUBlastX LINE_RTE-X 64390 65037 98 + . . scaffold42754 TRF Tandem_Repeat 68871 69376 886 + . . scaffold42754 GLEAN mRNA 72056 77110 0.999997 - . ID=CGI_10007674; scaffold42754 TRF Tandem_Repeat 73523 73907 598 + . . scaffold42754 GLEAN promoter 76346 77345 0.978232 + . ID=CGI_10007675; scaffold42754 GLEAN promoter 77111 78110 0.999997 - . ID=CGI_10007674; scaffold42754 GLEAN mRNA 77346 81667 0.978232 + . ID=CGI_10007675; scaffold42754 GLEAN promoter 84607 85606 0.741543 + . ID=CGI_10007676; scaffold42754 GLEAN mRNA 85607 87372 0.741543 + . ID=CGI_10007676; scaffold42754 TRF Tandem_Repeat 87377 87523 267 + . . scaffold42754 TRF Tandem_Repeat 104717 104756 80 + . . scaffold42754 TRF Tandem_Repeat 105100 105128 58 + . . scaffold42754 TRF Tandem_Repeat 105188 105231 70 + . . scaffold42754 WUBlastX LTR_DIRS 108696 109610 414 - . . scaffold42754 WUBlastX LTR_DIRS 109982 112033 918 - . . scaffold42754 WUBlastX LTR_DIRS 111987 112613 108 - . . scaffold42754 WUBlastX LTR_DIRS 115471 116478 738 - . . scaffold42754 WUBlastX LTR_DIRS 116545 118485 1275 - . . scaffold42754 WUBlastX LTR_Gypsy 118468 118665 26 - . . scaffold42754 WUBlastX LTR_DIRS 118531 119067 243 - . . scaffold42754 TRF Tandem_Repeat 120532 120893 488 + . . scaffold42754 TRF Tandem_Repeat 120532 120893 489 + . . scaffold42754 TRF Tandem_Repeat 122171 122557 578 + . . scaffold42754 GLEAN promoter 122203 123202 0.794851 + . ID=CGI_10007678; scaffold42754 GLEAN mRNA 123203 124885 0.794851 + . ID=CGI_10007678; scaffold42754 TRF Tandem_Repeat 127524 127761 431 + . . scaffold42754 GLEAN mRNA 132137 160897 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 135166 135380 141 + . . scaffold42754 TRF Tandem_Repeat 135198 135382 155 + . . scaffold42754 TRF Tandem_Repeat 137328 137891 536 + . . scaffold42754 TRF Tandem_Repeat 137329 137891 748 + . . scaffold42754 TRF Tandem_Repeat 144880 144997 218 + . . scaffold42754 TRF Tandem_Repeat 148693 148744 104 + . . scaffold42754 TRF Tandem_Repeat 152143 152193 75 + . . scaffold42754 TRF Tandem_Repeat 154149 154770 617 + . . scaffold42754 GLEAN promoter 159808 160807 0.998261 + . ID=CGI_10007680; scaffold42754 TRF Tandem_Repeat 160143 160421 513 + . . scaffold42754 TRF Tandem_Repeat 160478 160665 286 + . . scaffold42754 GLEAN mRNA 160808 169720 0.998261 + . ID=CGI_10007680; scaffold42754 GLEAN promoter 160898 161897 0.656628 - . ID=CGI_10007679; scaffold42754 TRF Tandem_Repeat 161869 161894 52 + . . scaffold42754 TRF Tandem_Repeat 179051 179093 86 + . . scaffold42754 GLEAN promoter 182600 183599 0.531333 + . ID=CGI_10007681; scaffold42754 GLEAN mRNA 183600 185207 0.531333 + . ID=CGI_10007681; scaffold42760 GLEAN promoter 3 1002 1 + . ID=CGI_10007625; scaffold42760 GLEAN mRNA 1003 11355 1 + . ID=CGI_10007625; scaffold42760 TRF Tandem_Repeat 7169 7231 119 + . . scaffold42760 TRF Tandem_Repeat 15561 15709 214 + . . scaffold42760 TRF Tandem_Repeat 16490 16760 310 + . . scaffold42760 TRF Tandem_Repeat 16515 16760 205 + . . scaffold42760 TRF Tandem_Repeat 20803 20842 55 + . . scaffold42760 GLEAN promoter 23051 24050 0.991371 + . ID=CGI_10007626; scaffold42760 GLEAN mRNA 24051 42967 0.991371 + . ID=CGI_10007626; scaffold42760 GLEAN mRNA 43655 49595 0.999938 - . ID=CGI_10007627; scaffold42760 GLEAN promoter 49596 50595 0.999938 - . ID=CGI_10007627; scaffold42760 GLEAN mRNA 54897 77816 0.975137 - . ID=CGI_10007628; scaffold42760 TRF Tandem_Repeat 59167 59224 73 + . . scaffold42760 TRF Tandem_Repeat 59167 59224 73 + . . scaffold42760 TRF Tandem_Repeat 59170 59223 56 + . . scaffold42760 GLEAN promoter 77817 78816 0.975137 - . ID=CGI_10007628; scaffold42760 GLEAN mRNA 78863 90209 0.574357 - . ID=CGI_10007629; scaffold42760 TRF Tandem_Repeat 88228 88256 58 + . . scaffold42760 GLEAN promoter 90210 91209 0.574357 - . ID=CGI_10007629; scaffold42760 GLEAN promoter 93631 94630 0.921715 + . ID=CGI_10007630; scaffold42760 GLEAN mRNA 94631 104576 0.921715 + . ID=CGI_10007630; scaffold42760 GLEAN mRNA 106826 112945 1 - . ID=CGI_10007631; scaffold42760 TRF Tandem_Repeat 107995 108042 96 + . . scaffold42760 GLEAN promoter 112946 113945 1 - . ID=CGI_10007631; scaffold42760 GLEAN promoter 116597 117596 0.999575 + . ID=CGI_10007632; scaffold42760 GLEAN mRNA 117597 133590 0.999575 + . ID=CGI_10007632; scaffold42760 TRF Tandem_Repeat 126423 126453 62 + . . scaffold42760 GLEAN promoter 145175 146174 0.400217 + . ID=CGI_10007633; scaffold42760 GLEAN mRNA 146175 147621 0.400217 + . ID=CGI_10007633; scaffold42760 GLEAN promoter 150936 151935 1 + . ID=CGI_10007634; scaffold42760 GLEAN mRNA 151936 152976 1 + . ID=CGI_10007634; scaffold42760 GLEAN mRNA 167157 169343 0.999997 - . ID=CGI_10007635; scaffold42760 GLEAN promoter 169344 170343 0.999997 - . ID=CGI_10007635; scaffold42760 WUBlastX DNA_Academ 170762 170926 24 - . . scaffold42760 WUBlastX DNA_Academ 170946 171032 23 - . . scaffold42760 WUBlastX DNA_Academ 171419 171502 24 - . . scaffold42760 WUBlastX LTR_Gypsy 182911 183756 290 + . . scaffold42760 WUBlastX LTR_Gypsy-Cigr 183043 184293 879 + . . scaffold42760 WUBlastX LTR_Gypsy-Cigr 184290 184973 605 + . . scaffold42760 WUBlastX LTR_Gypsy 184952 185326 80 + . . scaffold42760 WUBlastX LTR_Copia 185517 185615 31 + . . scaffold42760 TRF Tandem_Repeat 186024 186851 975 + . . scaffold42762 GLEAN promoter 7863 8862 0.335328 + . ID=CGI_10007600; scaffold42762 GLEAN mRNA 8863 10035 0.335328 + . ID=CGI_10007600; scaffold42762 GLEAN promoter 30838 31837 0.469055 + . ID=CGI_10007601; scaffold42762 GLEAN mRNA 31838 36532 0.469055 + . ID=CGI_10007601; scaffold42762 GLEAN promoter 52407 53406 1 + . ID=CGI_10007602; scaffold42762 GLEAN mRNA 53407 60375 1 + . ID=CGI_10007602; scaffold42762 GLEAN promoter 60695 61694 0.994449 + . ID=CGI_10007603; scaffold42762 GLEAN mRNA 61695 70621 0.994449 + . ID=CGI_10007603; scaffold42762 GLEAN promoter 91844 92843 0.98911 + . ID=CGI_10007604; scaffold42762 GLEAN mRNA 92844 95417 0.98911 + . ID=CGI_10007604; scaffold42762 GLEAN promoter 97872 98871 0.999789 + . ID=CGI_10007605; scaffold42762 GLEAN mRNA 98872 117374 0.999789 + . ID=CGI_10007605; scaffold42762 GLEAN mRNA 130019 148637 0.999997 - . ID=CGI_10007606; scaffold42762 GLEAN promoter 148638 149637 0.999997 - . ID=CGI_10007606; scaffold42766 GLEAN mRNA 582 5602 0.982593 - . ID=CGI_10007660; scaffold42766 TRF Tandem_Repeat 601 645 81 + . . scaffold42766 TRF Tandem_Repeat 887 1034 87 + . . scaffold42766 TRF Tandem_Repeat 2226 2934 971 + . . scaffold42766 TRF Tandem_Repeat 2938 2987 55 + . . scaffold42766 TRF Tandem_Repeat 2945 2995 75 + . . scaffold42766 WUBlastX DNA_hAT-Tip100 3287 3574 97 - . . scaffold42766 WUBlastX DNA_hAT-Tip100 3338 4870 337 - . . scaffold42766 WUBlastX DNA_hAT-Charlie 4016 5185 33 - . . scaffold42766 WUBlastX DNA_hAT-Tip100 5309 5530 34 - . . scaffold42766 GLEAN promoter 5603 6602 0.982593 - . ID=CGI_10007660; scaffold42766 TRF Tandem_Repeat 6266 7173 1539 + . . scaffold42766 TRF Tandem_Repeat 7635 8741 1255 + . . scaffold42766 TRF Tandem_Repeat 7635 9049 1036 + . . scaffold42766 TRF Tandem_Repeat 7768 8741 1627 + . . scaffold42766 TRF Tandem_Repeat 7781 9049 1903 + . . scaffold42766 TRF Tandem_Repeat 8685 8947 198 + . . scaffold42766 TRF Tandem_Repeat 8739 9049 335 + . . scaffold42766 TRF Tandem_Repeat 8739 8895 246 + . . scaffold42766 TRF Tandem_Repeat 8893 9049 246 + . . scaffold42766 GLEAN mRNA 15202 16134 0.982912 - . ID=CGI_10007661; scaffold42766 GLEAN promoter 16135 17134 0.982912 - . ID=CGI_10007661; scaffold42766 TRF Tandem_Repeat 19610 19644 70 + . . scaffold42766 TRF Tandem_Repeat 22091 22123 50 + . . scaffold42766 GLEAN promoter 23810 24809 0.651128 + . ID=CGI_10007662; scaffold42766 GLEAN mRNA 24810 26905 0.651128 + . ID=CGI_10007662; scaffold42766 GLEAN promoter 25981 26980 0.999993 + . ID=CGI_10007663; scaffold42766 GLEAN mRNA 26981 29191 0.999993 + . ID=CGI_10007663; scaffold42766 TRF Tandem_Repeat 29396 29461 55 + . . scaffold42766 TRF Tandem_Repeat 35628 36616 905 + . . scaffold42766 TRF Tandem_Repeat 35632 36283 687 + . . scaffold42766 TRF Tandem_Repeat 35632 36616 857 + . . scaffold42766 TRF Tandem_Repeat 36303 36412 177 + . . scaffold42766 TRF Tandem_Repeat 36430 36595 125 + . . scaffold42766 TRF Tandem_Repeat 36454 36616 173 + . . scaffold42766 TRF Tandem_Repeat 39063 39142 160 + . . scaffold42766 TRF Tandem_Repeat 39885 39922 76 + . . scaffold42766 TRF Tandem_Repeat 44301 44363 126 + . . scaffold42766 TRF Tandem_Repeat 45229 45262 68 + . . scaffold42766 TRF Tandem_Repeat 56102 56186 163 + . . scaffold42766 TRF Tandem_Repeat 65657 65693 74 + . . scaffold42766 TRF Tandem_Repeat 66386 66678 435 + . . scaffold42766 TRF Tandem_Repeat 66386 66700 213 + . . scaffold42766 TRF Tandem_Repeat 78566 78638 110 + . . scaffold42766 TRF Tandem_Repeat 78806 78846 82 + . . scaffold42766 TRF Tandem_Repeat 86612 87093 538 + . . scaffold42766 TRF Tandem_Repeat 87703 87736 68 + . . scaffold42766 TRF Tandem_Repeat 90088 90185 146 + . . scaffold42766 TRF Tandem_Repeat 91579 92217 913 + . . scaffold42766 TRF Tandem_Repeat 104011 105329 2052 + . . scaffold42766 TRF Tandem_Repeat 106951 107385 602 + . . scaffold42766 TRF Tandem_Repeat 108691 108728 76 + . . scaffold42766 TRF Tandem_Repeat 115711 115849 172 + . . scaffold42766 TRF Tandem_Repeat 116246 116394 235 + . . scaffold42766 TRF Tandem_Repeat 125646 125762 114 + . . scaffold42766 TRF Tandem_Repeat 126490 126693 214 + . . scaffold42766 GLEAN promoter 135904 136903 0.999999 + . ID=CGI_10007664; scaffold42766 TRF Tandem_Repeat 136710 136735 52 + . . scaffold42766 GLEAN mRNA 136904 141652 0.999999 + . ID=CGI_10007664; scaffold42766 TRF Tandem_Repeat 140448 140491 79 + . . scaffold42766 TRF Tandem_Repeat 140815 140857 86 + . . scaffold42766 GLEAN promoter 143358 144357 0.99999 + . ID=CGI_10007665; scaffold42766 GLEAN mRNA 144358 150567 0.99999 + . ID=CGI_10007665; scaffold42766 TRF Tandem_Repeat 151891 151952 88 + . . scaffold42766 TRF Tandem_Repeat 153394 153436 86 + . . scaffold42766 GLEAN promoter 156518 157517 0.999991 + . ID=CGI_10007666; scaffold42766 GLEAN mRNA 157518 162528 0.999991 + . ID=CGI_10007666; scaffold42766 TRF Tandem_Repeat 168140 168177 58 + . . scaffold42766 TRF Tandem_Repeat 169080 169123 88 + . . scaffold42766 TRF Tandem_Repeat 171380 171417 58 + . . scaffold42766 TRF Tandem_Repeat 172320 172363 88 + . . scaffold42766 GLEAN promoter 173976 174975 0.725198 + . ID=CGI_10007667; scaffold42766 TRF Tandem_Repeat 174253 174337 88 + . . scaffold42766 GLEAN mRNA 174976 179378 0.725198 + . ID=CGI_10007667; scaffold42766 TRF Tandem_Repeat 176891 176932 52 + . . scaffold42766 GLEAN mRNA 181083 182948 0.72238 - . ID=CGI_10007668; scaffold42766 GLEAN promoter 182949 183948 0.72238 - . ID=CGI_10007668; scaffold42766 WUBlastX LINE_L1-Tx1 186338 186553 22 + . . scaffold42766 WUBlastX LINE_L1-Tx1 186586 186735 40 + . . scaffold42770 WUBlastX DNA_TcMar-Stowa 11901 12059 22 + . . scaffold42770 WUBlastX DNA_TcMar-Tc1 11949 12971 421 + . . scaffold42770 GLEAN mRNA 14131 34729 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX LINE_L1-Tx1 16273 16968 29 - . . scaffold42770 WUBlastX LINE_L1 16555 16707 35 - . . scaffold42770 WUBlastX LINE_L1-Tx1 16692 16916 43 - . . scaffold42770 WUBlastX LINE_L1 16701 16877 68 - . . scaffold42770 WUBlastX LINE_L1 16943 17152 35 - . . scaffold42770 WUBlastX LINE_L1-Tx1 16979 17152 40 - . . scaffold42770 WUBlastX LINE_L1-Tx1 25923 26180 74 - . . scaffold42770 WUBlastX LINE_L1-Tx1 25983 26174 92 - . . scaffold42770 WUBlastX LINE_L1-Tx1 26034 26216 55 - . . scaffold42770 TRF Tandem_Repeat 27848 28860 991 + . . scaffold42770 TRF Tandem_Repeat 30240 30294 83 + . . scaffold42770 TRF Tandem_Repeat 31890 31921 50 + . . scaffold42770 GLEAN promoter 34730 35729 0.562742 - . ID=CGI_10007687; scaffold42770 WUBlastX DNA_Harbinger 36191 37465 858 + . . scaffold42770 GLEAN mRNA 37835 38074 0.582836 - . ID=CGI_10007688; scaffold42770 GLEAN promoter 38075 39074 0.582836 - . ID=CGI_10007688; scaffold42770 WUBlastX LTR_Gypsy-Troyk 45116 45427 190 + . . scaffold42770 WUBlastX LTR_Gypsy-Troyk 45408 45866 140 + . . scaffold42770 WUBlastX LTR_Gypsy-Troyk 45423 45968 93 + . . scaffold42770 GLEAN promoter 52297 53296 0.618185 + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53254 53331 22 + . . scaffold42770 WUBlastX DNA_Harbinger 53294 53908 24 + . . scaffold42770 GLEAN mRNA 53297 53668 0.618185 + . ID=CGI_10007689; scaffold42770 WUBlastX DNA_Harbinger 53330 53608 88 + . . scaffold42770 WUBlastX LINE_CR1 58922 59146 90 - . . scaffold42770 WUBlastX LINE_CR1 58997 59410 101 - . . scaffold42770 WUBlastX LINE_CR1 59115 59501 171 - . . scaffold42770 WUBlastX LINE_LOA 59202 59555 56 - . . scaffold42770 TRF Tandem_Repeat 62034 62060 54 + . . scaffold42770 TRF Tandem_Repeat 62060 62140 144 + . . scaffold42770 WUBlastX LTR_Ngaro 83178 83441 56 + . . scaffold42770 WUBlastX LTR_Ngaro 83241 83444 70 + . . scaffold42770 WUBlastX LINE_L1-Tx1 85400 86122 198 + . . scaffold42770 WUBlastX LINE_L1-Tx1 86118 86660 186 + . . scaffold42770 WUBlastX LINE_L1-Tx1 86630 86812 28 + . . scaffold42770 WUBlastX LINE_L1-Tx1 87599 87763 38 + . . scaffold42770 WUBlastX LINE_L1 87641 87787 46 + . . scaffold42770 WUBlastX LINE_L1 87668 87838 58 + . . scaffold42770 WUBlastX LINE_L1-Tx1 87674 87784 77 + . . scaffold42770 WUBlastX LINE_L1-Tx1 87813 88301 64 + . . scaffold42770 WUBlastX LINE_L1-Tx1 87936 88331 182 + . . scaffold42770 WUBlastX LINE_DRE 88011 88391 46 + . . scaffold42770 WUBlastX LINE_L1-Tx1 88403 88768 165 + . . scaffold42770 WUBlastX LINE_L1-Tx1 88523 88828 152 + . . scaffold42770 WUBlastX LINE_L1 88947 89087 23 + . . scaffold42770 TRF Tandem_Repeat 91273 91466 217 + . . scaffold42770 TRF Tandem_Repeat 91273 91466 244 + . . scaffold42770 TRF Tandem_Repeat 91493 91685 192 + . . scaffold42770 TRF Tandem_Repeat 91493 91624 110 + . . scaffold42770 TRF Tandem_Repeat 91750 91835 100 + . . scaffold42770 WUBlastX LINE_L1-Tx1 92026 92466 42 + . . scaffold42770 WUBlastX LINE_L1-Tx1 92035 92385 64 + . . scaffold42770 TRF Tandem_Repeat 93988 94038 93 + . . scaffold42770 TRF Tandem_Repeat 105176 105210 70 + . . scaffold42770 TRF Tandem_Repeat 127184 127229 92 + . . scaffold42770 TRF Tandem_Repeat 127368 127463 192 + . . scaffold42770 WUBlastX DNA_TcMar-Tc1 141340 142347 98 - . . scaffold42770 WUBlastX DNA_TcMar-Tc1 141340 141660 147 - . . scaffold42770 TRF Tandem_Repeat 145927 146897 1335 + . . scaffold42770 GLEAN mRNA 164243 166757 1 - . ID=CGI_10007690; scaffold42770 GLEAN promoter 166758 167757 1 - . ID=CGI_10007690; scaffold42770 GLEAN mRNA 173201 173398 1 - . ID=CGI_10007691; scaffold42770 GLEAN promoter 173399 174398 1 - . ID=CGI_10007691; scaffold42770 GLEAN mRNA 174169 188366 1 - . ID=CGI_10007692; scaffold42770 TRF Tandem_Repeat 186726 186880 143 + . . scaffold42770 GLEAN promoter 188367 188483 1 - . ID=CGI_10007692; scaffold42776 GLEAN mRNA 4551 9288 0.999946 - . ID=CGI_10007704; scaffold42776 GLEAN promoter 9289 10288 0.999946 - . ID=CGI_10007704; scaffold42776 TRF Tandem_Repeat 13081 13155 100 + . . scaffold42776 GLEAN promoter 14879 15878 0.727377 + . ID=CGI_10007705; scaffold42776 TRF Tandem_Repeat 15760 15816 78 + . . scaffold42776 GLEAN mRNA 15879 31177 0.727377 + . ID=CGI_10007705; scaffold42776 TRF Tandem_Repeat 25373 25429 114 + . . scaffold42776 GLEAN mRNA 31815 38306 0.999973 - . ID=CGI_10007706; scaffold42776 GLEAN promoter 38307 39306 0.999973 - . ID=CGI_10007706; scaffold42776 TRF Tandem_Repeat 41977 42023 50 + . . scaffold42776 TRF Tandem_Repeat 45826 45859 50 + . . scaffold42776 GLEAN mRNA 47481 56889 0.937542 - . ID=CGI_10007707; scaffold42776 TRF Tandem_Repeat 49354 50060 849 + . . scaffold42776 TRF Tandem_Repeat 52027 52091 66 + . . scaffold42776 GLEAN promoter 56890 57889 0.937542 - . ID=CGI_10007707; scaffold42776 GLEAN promoter 60897 61896 0.998995 + . ID=CGI_10007708; scaffold42776 GLEAN mRNA 61897 67332 0.998995 + . ID=CGI_10007708; scaffold42776 GLEAN mRNA 73269 90039 0.742597 - . ID=CGI_10007709; scaffold42776 GLEAN promoter 90040 91039 0.742597 - . ID=CGI_10007709; scaffold42776 GLEAN mRNA 90078 94505 0.999676 - . ID=CGI_10007710; scaffold42776 GLEAN promoter 94125 95124 0.651135 + . ID=CGI_10007711; scaffold42776 GLEAN promoter 94506 95505 0.999676 - . ID=CGI_10007710; scaffold42776 GLEAN mRNA 95125 114039 0.651135 + . ID=CGI_10007711; scaffold42776 GLEAN promoter 118143 119142 0.999676 + . ID=CGI_10007712; scaffold42776 GLEAN mRNA 119143 127048 0.999676 + . ID=CGI_10007712; scaffold42776 TRF Tandem_Repeat 123966 124017 104 + . . scaffold42776 TRF Tandem_Repeat 128277 128346 67 + . . scaffold42776 TRF Tandem_Repeat 131132 131270 122 + . . scaffold42776 GLEAN promoter 133575 134574 0.990126 + . ID=CGI_10007713; scaffold42776 TRF Tandem_Repeat 134121 134151 53 + . . scaffold42776 GLEAN mRNA 134575 162301 0.990126 + . ID=CGI_10007713; scaffold42776 TRF Tandem_Repeat 136251 136294 88 + . . scaffold42776 TRF Tandem_Repeat 156682 156727 92 + . . scaffold42776 TRF Tandem_Repeat 159491 159553 126 + . . scaffold42776 GLEAN mRNA 164625 169768 1 - . ID=CGI_10007714; scaffold42776 GLEAN promoter 169769 170768 1 - . ID=CGI_10007714; scaffold42776 TRF Tandem_Repeat 175321 175496 167 + . . scaffold42776 GLEAN mRNA 175523 176979 0.999674 - . ID=CGI_10007715; scaffold42776 GLEAN promoter 176980 177979 0.999674 - . ID=CGI_10007715; scaffold42776 WUBlastX LINE_Rex-Babar 186896 188158 80 + . . scaffold42776 WUBlastX LINE_RTE-X 187118 188791 716 + . . scaffold42776 WUBlastX LINE_RTE-X 188162 188932 175 + . . scaffold42784 GLEAN mRNA 1106 15958 0.841405 - . ID=CGI_10007727; scaffold42784 GLEAN promoter 3255 4254 0.99694 + . ID=CGI_10007728; scaffold42784 GLEAN mRNA 4255 31766 0.99694 + . ID=CGI_10007728; scaffold42784 GLEAN promoter 15959 16958 0.841405 - . ID=CGI_10007727; scaffold42784 TRF Tandem_Repeat 36098 36143 92 + . . scaffold42784 GLEAN mRNA 38696 41456 0.999949 - . ID=CGI_10007729; scaffold42784 GLEAN promoter 41457 42456 0.999949 - . ID=CGI_10007729; scaffold42784 WUBlastX LINE_CR1-L2 44062 44463 72 - . . scaffold42784 GLEAN mRNA 47357 47584 0.694468 - . ID=CGI_10007730; scaffold42784 GLEAN promoter 47585 48584 0.694468 - . ID=CGI_10007730; scaffold42784 WUBlastX LTR_Gypsy 47669 48193 133 - . . scaffold42784 GLEAN mRNA 48518 48790 0.61824 - . ID=CGI_10007731; scaffold42784 GLEAN promoter 48791 49790 0.61824 - . ID=CGI_10007731; scaffold42784 WUBlastX LTR_Pao 51553 51834 36 + . . scaffold42784 WUBlastX LTR_Pao 52315 52401 27 + . . scaffold42784 WUBlastX LTR_Pao 52374 52808 164 + . . scaffold42784 TRF Tandem_Repeat 52816 52858 86 + . . scaffold42784 WUBlastX LTR_Pao 52861 53025 118 + . . scaffold42784 WUBlastX LTR_Pao 52998 53291 132 + . . scaffold42784 WUBlastX LTR_Pao 53037 53546 58 + . . scaffold42784 GLEAN promoter 53212 54211 0.526003 + . ID=CGI_10007732; scaffold42784 WUBlastX LTR_Pao 53577 53786 26 + . . scaffold42784 GLEAN mRNA 54212 62212 0.526003 + . ID=CGI_10007732; scaffold42784 WUBlastX DNA_hAT-hATw 54848 55336 47 - . . scaffold42784 TRF Tandem_Repeat 59740 59788 89 + . . scaffold42784 TRF Tandem_Repeat 59788 59820 66 + . . scaffold42784 TRF Tandem_Repeat 59850 59880 62 + . . scaffold42784 TRF Tandem_Repeat 62658 63117 722 + . . scaffold42784 WUBlastX LINE_RTE-BovB 65121 65411 50 - . . scaffold42784 WUBlastX LINE_RTE-BovB 65166 66584 327 - . . scaffold42784 WUBlastX LINE_RTE-BovB 66154 67008 187 - . . scaffold42784 WUBlastX LINE_L2 66760 67056 20 - . . scaffold42784 GLEAN promoter 68904 69903 0.999998 + . ID=CGI_10007733; scaffold42784 GLEAN mRNA 69904 77412 0.999998 + . ID=CGI_10007733; scaffold42784 TRF Tandem_Repeat 70501 70592 175 + . . scaffold42784 TRF Tandem_Repeat 73714 73789 107 + . . scaffold42784 TRF Tandem_Repeat 73715 73789 123 + . . scaffold42784 GLEAN mRNA 78859 87378 1 - . ID=CGI_10007734; scaffold42784 TRF Tandem_Repeat 80185 80458 347 + . . scaffold42784 GLEAN promoter 87333 88332 0.5 + . ID=CGI_10007735; scaffold42784 GLEAN promoter 87379 88378 1 - . ID=CGI_10007734; scaffold42784 GLEAN mRNA 88333 93101 0.5 + . ID=CGI_10007735; scaffold42784 GLEAN promoter 95137 96136 1 + . ID=CGI_10007736; scaffold42784 GLEAN mRNA 96137 98807 1 + . ID=CGI_10007736; scaffold42784 GLEAN promoter 98260 99259 0.999675 + . ID=CGI_10007737; scaffold42784 GLEAN mRNA 99260 108520 0.999675 + . ID=CGI_10007737; scaffold42784 GLEAN mRNA 99336 100522 1 - . ID=CGI_10007738; scaffold42784 GLEAN promoter 100523 101522 1 - . ID=CGI_10007738; scaffold42784 TRF Tandem_Repeat 111390 111489 76 + . . scaffold42784 TRF Tandem_Repeat 111523 111561 78 + . . scaffold42784 TRF Tandem_Repeat 112062 112193 165 + . . scaffold42784 TRF Tandem_Repeat 113401 113469 138 + . . scaffold42784 TRF Tandem_Repeat 118717 118763 94 + . . scaffold42784 GLEAN promoter 119262 120261 0.999675 + . ID=CGI_10007739; scaffold42784 GLEAN mRNA 120262 131255 0.999675 + . ID=CGI_10007739; scaffold42784 TRF Tandem_Repeat 120613 120683 142 + . . scaffold42784 TRF Tandem_Repeat 125679 125752 148 + . . scaffold42784 TRF Tandem_Repeat 128599 129077 527 + . . scaffold42784 GLEAN mRNA 134049 147068 1 - . ID=CGI_10007740; scaffold42784 TRF Tandem_Repeat 140944 141002 118 + . . scaffold42784 TRF Tandem_Repeat 141282 141331 91 + . . scaffold42784 GLEAN promoter 146384 147383 0.999948 + . ID=CGI_10007741; scaffold42784 GLEAN promoter 147069 148068 1 - . ID=CGI_10007740; scaffold42784 GLEAN mRNA 147384 150318 0.999948 + . ID=CGI_10007741; scaffold42784 GLEAN mRNA 147631 158974 0.999027 - . ID=CGI_10007742; scaffold42784 TRF Tandem_Repeat 157282 157314 66 + . . scaffold42784 GLEAN promoter 157513 158512 1 + . ID=CGI_10007743; scaffold42784 TRF Tandem_Repeat 158127 158194 136 + . . scaffold42784 GLEAN mRNA 158513 165882 1 + . ID=CGI_10007743; scaffold42784 GLEAN promoter 158975 159974 0.999027 - . ID=CGI_10007742; scaffold42784 GLEAN promoter 166635 167634 0.462643 + . ID=CGI_10007744; scaffold42784 GLEAN mRNA 167635 189271 0.462643 + . ID=CGI_10007744; scaffold42784 TRF Tandem_Repeat 175669 176255 739 + . . scaffold42784 TRF Tandem_Repeat 175669 176255 739 + . . scaffold42784 TRF Tandem_Repeat 175669 176255 586 + . . scaffold42784 GLEAN mRNA 179439 182863 1 - . ID=CGI_10007745; scaffold42784 GLEAN promoter 182864 183863 1 - . ID=CGI_10007745; scaffold42784 TRF Tandem_Repeat 183272 183296 50 + . . scaffold42784 TRF Tandem_Repeat 188091 188151 122 + . . scaffold42788 TRF Tandem_Repeat 22614 22673 120 + . . scaffold42788 TRF Tandem_Repeat 22861 22897 74 + . . scaffold42788 TRF Tandem_Repeat 22895 22969 132 + . . scaffold42788 TRF Tandem_Repeat 23463 23529 73 + . . scaffold42788 GLEAN mRNA 24369 91602 0.998319 - . ID=CGI_10007754; scaffold42788 WUBlastX LINE_L2 26088 26396 110 - . . scaffold42788 WUBlastX LINE_CR1-L2 26127 26471 21 - . . scaffold42788 TRF Tandem_Repeat 40622 40680 59 + . . scaffold42788 TRF Tandem_Repeat 40881 40965 170 + . . scaffold42788 TRF Tandem_Repeat 55891 55923 66 + . . scaffold42788 TRF Tandem_Repeat 61136 61176 82 + . . scaffold42788 TRF Tandem_Repeat 61286 61597 244 + . . scaffold42788 WUBlastX DNA_TcMar-Tc1 67237 67758 49 + . . scaffold42788 WUBlastX DNA_TcMar-Tc1 67707 68066 83 + . . scaffold42788 WUBlastX DNA_TcMar-Tc1 67803 68123 53 + . . scaffold42788 WUBlastX DNA_TcMar-Tc1 67803 68186 32 + . . scaffold42788 TRF Tandem_Repeat 84468 84501 50 + . . scaffold42788 GLEAN promoter 91603 92602 0.998319 - . ID=CGI_10007754; scaffold42788 TRF Tandem_Repeat 93989 94032 61 + . . scaffold42788 GLEAN promoter 98407 99406 0.339426 + . ID=CGI_10007755; scaffold42788 GLEAN mRNA 99407 151977 0.339426 + . ID=CGI_10007755; scaffold42788 TRF Tandem_Repeat 104893 104980 81 + . . scaffold42788 WUBlastX LINE_L1-Tx1 105912 106076 43 + . . scaffold42788 WUBlastX LINE_L1-Tx1 106079 106843 60 + . . scaffold42788 WUBlastX LINE_L1-Tx1 106343 106813 102 + . . scaffold42788 TRF Tandem_Repeat 118044 118114 142 + . . scaffold42788 WUBlastX LINE_L1-Tx1 123893 124243 89 - . . scaffold42788 TRF Tandem_Repeat 132895 132929 70 + . . scaffold42788 TRF Tandem_Repeat 138499 138524 52 + . . scaffold42788 GLEAN promoter 151220 152219 1 + . ID=CGI_10007756; scaffold42788 GLEAN mRNA 152220 153910 1 + . ID=CGI_10007756; scaffold42788 TRF Tandem_Repeat 161428 162120 1133 + . . scaffold42788 TRF Tandem_Repeat 164342 164385 88 + . . scaffold42788 TRF Tandem_Repeat 174020 174058 78 + . . scaffold42788 TRF Tandem_Repeat 174082 174582 518 + . . scaffold42788 TRF Tandem_Repeat 174090 174576 520 + . . scaffold42788 TRF Tandem_Repeat 174950 175002 97 + . . scaffold42788 WUBlastX LINE_L2 180983 181234 41 + . . scaffold42788 TRF Tandem_Repeat 188909 190237 1655 + . . scaffold42790 TRF Tandem_Repeat 882 944 126 + . . scaffold42790 TRF Tandem_Repeat 4031 4128 110 + . . scaffold42790 WUBlastX LTR_DIRS 13057 13827 50 + . . scaffold42790 WUBlastX LTR_DIRS 13868 14353 103 + . . scaffold42790 WUBlastX LTR_DIRS 14253 15125 702 + . . scaffold42790 WUBlastX LTR_DIRS 15122 16021 529 + . . scaffold42790 WUBlastX LTR_DIRS 15913 16824 563 + . . scaffold42790 GLEAN mRNA 19128 29271 0.999944 - . ID=CGI_10007716; scaffold42790 TRF Tandem_Repeat 23443 23502 120 + . . scaffold42790 GLEAN promoter 29272 30271 0.999944 - . ID=CGI_10007716; scaffold42790 GLEAN mRNA 29462 36949 0.764018 - . ID=CGI_10007717; scaffold42790 TRF Tandem_Repeat 30015 30455 571 + . . scaffold42790 TRF Tandem_Repeat 31363 31619 273 + . . scaffold42790 GLEAN promoter 36950 37949 0.764018 - . ID=CGI_10007717; scaffold42790 TRF Tandem_Repeat 40146 40217 144 + . . scaffold42790 TRF Tandem_Repeat 46462 46732 249 + . . scaffold42790 TRF Tandem_Repeat 46462 46732 316 + . . scaffold42790 TRF Tandem_Repeat 46504 46732 264 + . . scaffold42790 GLEAN mRNA 47227 102130 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 51085 51128 88 + . . scaffold42790 TRF Tandem_Repeat 51647 51907 267 + . . scaffold42790 TRF Tandem_Repeat 52515 52894 584 + . . scaffold42790 TRF Tandem_Repeat 52810 53143 252 + . . scaffold42790 TRF Tandem_Repeat 54655 54939 448 + . . scaffold42790 TRF Tandem_Repeat 54668 54978 333 + . . scaffold42790 TRF Tandem_Repeat 54810 54978 278 + . . scaffold42790 TRF Tandem_Repeat 55532 55959 667 + . . scaffold42790 TRF Tandem_Repeat 56412 56450 78 + . . scaffold42790 TRF Tandem_Repeat 56792 56881 98 + . . scaffold42790 TRF Tandem_Repeat 56809 56886 120 + . . scaffold42790 TRF Tandem_Repeat 60146 60197 68 + . . scaffold42790 TRF Tandem_Repeat 60298 60325 56 + . . scaffold42790 TRF Tandem_Repeat 62832 62873 84 + . . scaffold42790 TRF Tandem_Repeat 67777 67821 90 + . . scaffold42790 TRF Tandem_Repeat 69759 70339 689 + . . scaffold42790 TRF Tandem_Repeat 69760 70339 688 + . . scaffold42790 TRF Tandem_Repeat 71641 71799 126 + . . scaffold42790 TRF Tandem_Repeat 72771 72904 250 + . . scaffold42790 TRF Tandem_Repeat 78256 78354 180 + . . scaffold42790 TRF Tandem_Repeat 79229 79502 431 + . . scaffold42790 TRF Tandem_Repeat 79229 79561 463 + . . scaffold42790 TRF Tandem_Repeat 79229 79561 477 + . . scaffold42790 TRF Tandem_Repeat 84725 84772 96 + . . scaffold42790 TRF Tandem_Repeat 87622 87736 63 + . . scaffold42790 TRF Tandem_Repeat 93232 93549 618 + . . scaffold42790 TRF Tandem_Repeat 94316 94457 152 + . . scaffold42790 TRF Tandem_Repeat 94914 95169 431 + . . scaffold42790 GLEAN promoter 102131 103130 0.555851 - . ID=CGI_10007718; scaffold42790 TRF Tandem_Repeat 106455 106506 104 + . . scaffold42790 TRF Tandem_Repeat 117144 117181 51 + . . scaffold42790 WUBlastX LINE_RTE-BovB 130784 130933 54 - . . scaffold42790 TRF Tandem_Repeat 132183 132248 100 + . . scaffold42790 TRF Tandem_Repeat 136316 136340 50 + . . scaffold42790 WUBlastX LTR_Gypsy 139932 140594 94 + . . scaffold42790 WUBlastX LTR_Gypsy 140084 140251 122 + . . scaffold42790 WUBlastX LTR_Gypsy 140227 140697 134 + . . scaffold42790 WUBlastX LTR_Gypsy 140518 140745 86 + . . scaffold42790 WUBlastX LINE_L1-Tx1 142342 143871 200 + . . scaffold42790 WUBlastX LINE_L1-Tx1 142639 143799 245 + . . scaffold42790 WUBlastX LTR_Gypsy 154513 155250 175 + . . scaffold42790 WUBlastX LTR_Gypsy 154588 155172 183 + . . scaffold42790 WUBlastX LTR_Gypsy 155229 155405 60 + . . scaffold42790 WUBlastX LTR_Gypsy-Cigr 155435 155674 60 + . . scaffold42790 WUBlastX LTR_Gypsy 155480 156181 155 + . . scaffold42790 WUBlastX LTR_Gypsy 156171 156677 251 + . . scaffold42790 WUBlastX LTR_Gypsy 156698 157165 233 + . . scaffold42790 WUBlastX LTR_Gypsy 156698 157081 302 + . . scaffold42790 WUBlastX LTR_Gypsy 157565 157933 71 + . . scaffold42790 WUBlastX LTR_Gypsy 157622 157909 93 + . . scaffold42790 WUBlastX LTR_Gypsy 157724 157906 100 + . . scaffold42790 WUBlastX LTR_Gypsy 157760 157918 107 + . . scaffold42790 WUBlastX LTR_Gypsy 157903 158205 176 + . . scaffold42790 WUBlastX LTR_Gypsy 158160 158783 236 + . . scaffold42790 WUBlastX LTR_Gypsy 158706 158798 37 + . . scaffold42790 WUBlastX LTR_Gypsy 158786 158827 28 + . . scaffold42790 WUBlastX LTR_Gypsy 158806 158883 29 + . . scaffold42790 WUBlastX LTR_Gypsy 158818 158994 146 + . . scaffold42790 WUBlastX LTR_Gypsy 159000 159665 258 + . . scaffold42790 WUBlastX LTR_Gypsy 159000 159452 288 + . . scaffold42790 WUBlastX LTR_Gypsy 159000 159830 242 + . . scaffold42790 TRF Tandem_Repeat 162661 162702 66 + . . scaffold42790 TRF Tandem_Repeat 163882 163958 145 + . . scaffold42790 TRF Tandem_Repeat 175107 175168 124 + . . scaffold42790 TRF Tandem_Repeat 175952 175976 50 + . . scaffold42790 WUBlastX LINE_Penelope 177131 177262 49 + . . scaffold42790 WUBlastX DNA_Harbinger 177734 178015 112 + . . scaffold42790 WUBlastX DNA_Harbinger 177758 178126 89 + . . scaffold42790 TRF Tandem_Repeat 178386 178452 134 + . . scaffold42790 TRF Tandem_Repeat 180030 180302 205 + . . scaffold42790 TRF Tandem_Repeat 180048 180282 197 + . . scaffold42790 WUBlastX DNA_Harbinger 180439 180549 75 + . . scaffold42790 WUBlastX DNA_Harbinger 181268 181381 41 + . . scaffold42790 GLEAN mRNA 181485 188091 0.999947 - . ID=CGI_10007719; scaffold42790 TRF Tandem_Repeat 183727 183973 381 + . . scaffold42790 WUBlastX DNA_Harbinger 184363 184527 58 - . . scaffold42790 WUBlastX LINE_Penelope 186125 186961 191 - . . scaffold42790 WUBlastX LINE_Penelope 186970 187524 312 - . . scaffold42790 WUBlastX LINE_Penelope 186985 187620 100 - . . scaffold42790 WUBlastX LINE_Penelope 186985 187767 81 - . . scaffold42790 GLEAN promoter 188092 189091 0.999947 - . ID=CGI_10007719; scaffold42790 WUBlastX LINE_Penelope 188323 188934 94 + . . scaffold42790 WUBlastX LINE_Penelope 188377 189039 86 + . . scaffold42794 TRF Tandem_Repeat 6728 6779 104 + . . scaffold42794 GLEAN promoter 7176 8175 0.518842 + . ID=CGI_10007693; scaffold42794 GLEAN mRNA 8176 24084 0.518842 + . ID=CGI_10007693; scaffold42794 TRF Tandem_Repeat 26976 27028 97 + . . scaffold42794 TRF Tandem_Repeat 31210 32275 1083 + . . scaffold42794 GLEAN mRNA 33674 37365 0.99093 - . ID=CGI_10007694; scaffold42794 GLEAN promoter 37366 38365 0.99093 - . ID=CGI_10007694; scaffold42794 TRF Tandem_Repeat 37808 38860 1201 + . . scaffold42794 TRF Tandem_Repeat 40256 40305 84 + . . scaffold42794 TRF Tandem_Repeat 40259 40304 58 + . . scaffold42794 GLEAN promoter 46540 47539 0.504718 + . ID=CGI_10007695; scaffold42794 GLEAN mRNA 47540 61932 0.504718 + . ID=CGI_10007695; scaffold42794 TRF Tandem_Repeat 55986 56860 1174 + . . scaffold42794 TRF Tandem_Repeat 58436 60859 3585 + . . scaffold42794 TRF Tandem_Repeat 58436 60859 3508 + . . scaffold42794 GLEAN promoter 63686 64685 0.530039 + . ID=CGI_10007696; scaffold42794 GLEAN mRNA 64686 66011 0.530039 + . ID=CGI_10007696; scaffold42794 GLEAN promoter 66584 67583 0.999569 + . ID=CGI_10007697; scaffold42794 GLEAN mRNA 67584 92866 0.999569 + . ID=CGI_10007697; scaffold42794 TRF Tandem_Repeat 68457 68533 131 + . . scaffold42794 TRF Tandem_Repeat 70312 70365 108 + . . scaffold42794 TRF Tandem_Repeat 74686 74727 84 + . . scaffold42794 TRF Tandem_Repeat 83511 83562 104 + . . scaffold42794 TRF Tandem_Repeat 101436 101517 67 + . . scaffold42794 GLEAN promoter 102783 103782 0.999999 + . ID=CGI_10007698; scaffold42794 GLEAN mRNA 103783 126122 0.999999 + . ID=CGI_10007698; scaffold42794 TRF Tandem_Repeat 119192 119232 82 + . . scaffold42794 WUBlastX LINE_RTE-X 134998 135405 54 + . . scaffold42794 WUBlastX LINE_RTE-X 135187 135546 134 + . . scaffold42794 WUBlastX LINE_RTE-X 135187 135411 142 + . . scaffold42794 GLEAN promoter 135487 136486 1 + . ID=CGI_10007699; scaffold42794 GLEAN mRNA 136487 140414 1 + . ID=CGI_10007699; scaffold42794 TRF Tandem_Repeat 139529 139837 514 + . . scaffold42794 GLEAN mRNA 140843 141982 0.791674 - . ID=CGI_10007700; scaffold42794 GLEAN promoter 141983 142982 0.791674 - . ID=CGI_10007700; scaffold42794 GLEAN promoter 147935 148934 0.927924 + . ID=CGI_10007701; scaffold42794 GLEAN mRNA 148935 163098 0.927924 + . ID=CGI_10007701; scaffold42794 GLEAN mRNA 171708 184647 1 - . ID=CGI_10007702; scaffold42794 TRF Tandem_Repeat 175104 175153 100 + . . scaffold42794 TRF Tandem_Repeat 178130 178181 104 + . . scaffold42794 TRF Tandem_Repeat 179468 179517 100 + . . scaffold42794 GLEAN promoter 184648 185647 1 - . ID=CGI_10007702; scaffold42794 TRF Tandem_Repeat 186967 187987 1338 + . . scaffold42794 TRF Tandem_Repeat 188163 188207 54 + . . scaffold42804 TRF Tandem_Repeat 993 1212 84 + . . scaffold42804 TRF Tandem_Repeat 5814 6710 993 + . . scaffold42804 GLEAN promoter 39455 40454 0.990009 + . ID=CGI_10007778; scaffold42804 GLEAN mRNA 40455 44520 0.990009 + . ID=CGI_10007778; scaffold42804 TRF Tandem_Repeat 47870 48179 278 + . . scaffold42804 TRF Tandem_Repeat 71041 71095 56 + . . scaffold42804 TRF Tandem_Repeat 75055 75104 57 + . . scaffold42804 GLEAN promoter 76910 77909 0.910125 + . ID=CGI_10007779; scaffold42804 GLEAN mRNA 77910 84833 0.910125 + . ID=CGI_10007779; scaffold42804 WUBlastX LTR_Gypsy-Cigr 79734 80054 69 - . . scaffold42804 TRF Tandem_Repeat 83228 83320 143 + . . scaffold42804 TRF Tandem_Repeat 84054 84187 112 + . . scaffold42804 TRF Tandem_Repeat 94897 94942 83 + . . scaffold42804 TRF Tandem_Repeat 98480 98549 63 + . . scaffold42804 TRF Tandem_Repeat 98480 98538 66 + . . scaffold42804 TRF Tandem_Repeat 107366 107415 75 + . . scaffold42804 TRF Tandem_Repeat 107797 107845 98 + . . scaffold42804 TRF Tandem_Repeat 109303 109356 99 + . . scaffold42804 WUBlastX LINE_R2-Hero 114487 114702 48 + . . scaffold42804 WUBlastX LINE_R2-Hero 114538 114696 56 + . . scaffold42804 TRF Tandem_Repeat 131871 131956 172 + . . scaffold42804 TRF Tandem_Repeat 156476 156511 63 + . . scaffold42804 GLEAN mRNA 157232 161831 0.799839 - . ID=CGI_10007780; scaffold42804 WUBlastX LINE_L1 158829 159371 39 - . . scaffold42804 WUBlastX LINE_L1-Tx1 158850 159218 61 - . . scaffold42804 GLEAN promoter 160722 161721 0.970009 + . ID=CGI_10007781; scaffold42804 GLEAN mRNA 161722 181063 0.970009 + . ID=CGI_10007781; scaffold42804 GLEAN promoter 161832 162831 0.799839 - . ID=CGI_10007780; scaffold42804 TRF Tandem_Repeat 173383 173417 61 + . . scaffold42804 WUBlastX LINE_L2 184017 185585 931 - . . scaffold42804 WUBlastX LINE_Jockey 184296 185864 88 - . . scaffold42836 GLEAN mRNA 10467 15300 0.999999 - . ID=CGI_10007854; scaffold42836 GLEAN promoter 15301 16300 0.999999 - . ID=CGI_10007854; scaffold42836 TRF Tandem_Repeat 32222 32275 65 + . . scaffold42836 GLEAN mRNA 33359 52677 0.999927 - . ID=CGI_10007855; scaffold42836 TRF Tandem_Repeat 38877 38921 90 + . . scaffold42836 GLEAN promoter 52678 53677 0.999927 - . ID=CGI_10007855; scaffold42836 GLEAN mRNA 52773 56759 0.999799 - . ID=CGI_10007856; scaffold42836 GLEAN promoter 56760 57759 0.999799 - . ID=CGI_10007856; scaffold42836 TRF Tandem_Repeat 57237 57499 327 + . . scaffold42836 GLEAN mRNA 62856 67533 1 - . ID=CGI_10007857; scaffold42836 GLEAN promoter 67534 68533 1 - . ID=CGI_10007857; scaffold42836 TRF Tandem_Repeat 68689 68728 71 + . . scaffold42836 GLEAN mRNA 70441 71631 0.686061 - . ID=CGI_10007858; scaffold42836 GLEAN promoter 70489 71488 0.999133 + . ID=CGI_10007859; scaffold42836 GLEAN mRNA 71489 86514 0.999133 + . ID=CGI_10007859; scaffold42836 GLEAN promoter 71632 72631 0.686061 - . ID=CGI_10007858; scaffold42836 TRF Tandem_Repeat 72601 72669 138 + . . scaffold42836 TRF Tandem_Repeat 73566 73614 50 + . . scaffold42836 TRF Tandem_Repeat 78666 78712 85 + . . scaffold42836 WUBlastX LINE_CR1-L2 95930 96073 34 - . . scaffold42836 TRF Tandem_Repeat 97853 99242 1554 + . . scaffold42836 GLEAN promoter 100715 101714 0.986039 + . ID=CGI_10007860; scaffold42836 GLEAN mRNA 101715 122664 0.986039 + . ID=CGI_10007860; scaffold42836 TRF Tandem_Repeat 106777 106942 296 + . . scaffold42836 WUBlastX LTR_Gypsy 107168 107269 25 + . . scaffold42836 TRF Tandem_Repeat 111618 111669 68 + . . scaffold42836 WUBlastX LTR_Gypsy 111934 111987 28 + . . scaffold42836 WUBlastX LTR_Gypsy 114514 114642 31 + . . scaffold42836 TRF Tandem_Repeat 117467 117529 126 + . . scaffold42836 TRF Tandem_Repeat 130177 130268 69 + . . scaffold42836 GLEAN promoter 130395 131394 0.238545 + . ID=CGI_10007861; scaffold42836 GLEAN mRNA 131395 140127 0.238545 + . ID=CGI_10007861; scaffold42836 TRF Tandem_Repeat 132007 132066 61 + . . scaffold42836 TRF Tandem_Repeat 135631 135671 82 + . . scaffold42836 TRF Tandem_Repeat 135721 135770 91 + . . scaffold42836 TRF Tandem_Repeat 140266 140291 52 + . . scaffold42836 GLEAN promoter 142632 143631 1 + . ID=CGI_10007862; scaffold42836 GLEAN mRNA 143632 181424 1 + . ID=CGI_10007862; scaffold42836 TRF Tandem_Repeat 144342 144387 92 + . . scaffold42836 TRF Tandem_Repeat 151034 151707 1143 + . . scaffold42836 TRF Tandem_Repeat 155717 155758 75 + . . scaffold42836 TRF Tandem_Repeat 157976 158023 96 + . . scaffold42836 TRF Tandem_Repeat 160479 160863 413 + . . scaffold42836 TRF Tandem_Repeat 160479 160659 132 + . . scaffold42836 TRF Tandem_Repeat 160951 161413 719 + . . scaffold42836 WUBlastX LTR_Gypsy 161416 161508 21 + . . scaffold42836 WUBlastX LINE_RTE-X 167153 168379 392 + . . scaffold42836 WUBlastX LINE_CR1 168758 168832 21 + . . scaffold42836 TRF Tandem_Repeat 172684 172727 52 + . . scaffold42836 TRF Tandem_Repeat 179501 179537 74 + . . scaffold42836 GLEAN promoter 182939 183938 1 + . ID=CGI_10007863; scaffold42836 GLEAN mRNA 183939 192708 1 + . ID=CGI_10007863; scaffold42836 TRF Tandem_Repeat 189264 189332 102 + . . scaffold42836 TRF Tandem_Repeat 189264 189335 108 + . . scaffold42840 GLEAN promoter 1 77 0.998904 + . ID=CGI_10007830; scaffold42840 GLEAN mRNA 78 8126 0.998904 + . ID=CGI_10007830; scaffold42840 WUBlastX LINE_RTE-X 2606 3184 103 + . . scaffold42840 WUBlastX LINE_RTE-X 2609 3058 126 + . . scaffold42840 TRF Tandem_Repeat 3697 4022 517 + . . scaffold42840 TRF Tandem_Repeat 9109 9488 190 + . . scaffold42840 TRF Tandem_Repeat 9141 9608 281 + . . scaffold42840 TRF Tandem_Repeat 9153 9612 347 + . . scaffold42840 GLEAN mRNA 10683 12305 1 - . ID=CGI_10007831; scaffold42840 GLEAN promoter 12306 13305 1 - . ID=CGI_10007831; scaffold42840 TRF Tandem_Repeat 24909 24940 55 + . . scaffold42840 WUBlastX LINE_RTE-X 25017 25394 30 - . . scaffold42840 WUBlastX LINE_RTE-X 25062 25319 40 - . . scaffold42840 WUBlastX LINE_RTE-X 25140 25316 87 - . . scaffold42840 WUBlastX LINE_RTE-X 25152 25370 84 - . . scaffold42840 TRF Tandem_Repeat 26544 26689 157 + . . scaffold42840 TRF Tandem_Repeat 26544 27014 222 + . . scaffold42840 TRF Tandem_Repeat 26753 26880 118 + . . scaffold42840 TRF Tandem_Repeat 26760 26879 91 + . . scaffold42840 TRF Tandem_Repeat 26878 27014 116 + . . scaffold42840 GLEAN mRNA 29251 31097 1 - . ID=CGI_10007832; scaffold42840 GLEAN promoter 31098 32097 1 - . ID=CGI_10007832; scaffold42840 TRF Tandem_Repeat 32573 32643 115 + . . scaffold42840 TRF Tandem_Repeat 48132 48280 185 + . . scaffold42840 TRF Tandem_Repeat 48358 48519 183 + . . scaffold42840 TRF Tandem_Repeat 48559 48665 169 + . . scaffold42840 TRF Tandem_Repeat 48572 49751 323 + . . scaffold42840 TRF Tandem_Repeat 48806 50128 1295 + . . scaffold42840 TRF Tandem_Repeat 49942 50128 108 + . . scaffold42840 GLEAN promoter 59597 60596 0.754681 + . ID=CGI_10007833; scaffold42840 GLEAN mRNA 60597 70020 0.754681 + . ID=CGI_10007833; scaffold42840 WUBlastX LINE_RTE-X 62469 63494 437 - . . scaffold42840 WUBlastX LINE_RTE-X 63487 64734 644 - . . scaffold42840 WUBlastX LINE_L2 63700 65076 42 - . . scaffold42840 GLEAN promoter 69742 70741 0.999689 + . ID=CGI_10007834; scaffold42840 GLEAN mRNA 70742 73260 0.999689 + . ID=CGI_10007834; scaffold42840 TRF Tandem_Repeat 72680 72961 485 + . . scaffold42840 TRF Tandem_Repeat 72818 72927 61 + . . scaffold42840 TRF Tandem_Repeat 75913 75959 76 + . . scaffold42840 GLEAN mRNA 99061 121834 0.994857 - . ID=CGI_10007835; scaffold42840 TRF Tandem_Repeat 104078 104231 68 + . . scaffold42840 WUBlastX DNA_Crypton 120166 120570 88 - . . scaffold42840 WUBlastX DNA_Crypton 120298 120549 98 - . . scaffold42840 GLEAN promoter 121835 122834 0.994857 - . ID=CGI_10007835; scaffold42840 TRF Tandem_Repeat 131031 131243 372 + . . scaffold42840 GLEAN mRNA 134311 145100 0.999472 - . ID=CGI_10007836; scaffold42840 WUBlastX LINE_RTE-X 139279 139791 161 + . . scaffold42840 WUBlastX LINE_RTE-X 139411 139779 180 + . . scaffold42840 GLEAN promoter 145101 146100 0.999472 - . ID=CGI_10007836; scaffold42840 GLEAN mRNA 146084 155488 0.783335 - . ID=CGI_10007837; scaffold42840 TRF Tandem_Repeat 153196 153223 56 + . . scaffold42840 GLEAN promoter 155489 156488 0.783335 - . ID=CGI_10007837; scaffold42840 WUBlastX DNA_Crypton 156870 157301 91 - . . scaffold42840 WUBlastX DNA_Crypton 157740 158213 90 - . . scaffold42840 TRF Tandem_Repeat 163026 163056 62 + . . scaffold42840 GLEAN mRNA 165289 174869 0.255893 - . ID=CGI_10007838; scaffold42840 GLEAN promoter 174870 175869 0.255893 - . ID=CGI_10007838; scaffold42840 GLEAN mRNA 175282 176402 1 - . ID=CGI_10007839; scaffold42840 GLEAN promoter 176403 177402 1 - . ID=CGI_10007839; scaffold42840 GLEAN mRNA 176465 192129 0.833079 - . ID=CGI_10007840; scaffold42840 TRF Tandem_Repeat 180682 180729 96 + . . scaffold42840 WUBlastX DNA_TcMar-Marin 185706 185801 45 - . . scaffold42840 WUBlastX DNA_TcMar-Marin 185845 185991 32 - . . scaffold42840 WUBlastX DNA_TcMar-Marin 186057 186464 87 - . . scaffold42840 WUBlastX LINE_CR1 187971 188168 24 + . . scaffold42840 WUBlastX LINE_L2 188219 188365 34 + . . scaffold42840 WUBlastX LINE_L2 188246 188380 61 + . . scaffold42840 WUBlastX LINE_L2 188273 188380 70 + . . scaffold42840 WUBlastX LINE_L2 188371 189366 105 + . . scaffold42840 WUBlastX LINE_L2 188383 188742 201 + . . scaffold42840 WUBlastX LINE_CR1 190754 190870 23 + . . scaffold42840 WUBlastX LINE_CR1 190796 190918 46 + . . scaffold42840 WUBlastX LINE_CR1 190822 191133 55 + . . scaffold42840 WUBlastX LINE_CR1 190885 191133 103 + . . scaffold42840 WUBlastX LINE_CR1 191157 191456 119 + . . scaffold42840 GLEAN promoter 192130 193129 0.833079 - . ID=CGI_10007840; scaffold42850 TRF Tandem_Repeat 45 1062 1130 + . . scaffold42850 TRF Tandem_Repeat 45 958 1174 + . . scaffold42850 GLEAN promoter 2662 3661 0.999996 + . ID=CGI_10007918; scaffold42850 GLEAN mRNA 3662 13171 0.999996 + . ID=CGI_10007918; scaffold42850 WUBlastX LINE_RTE-X 10726 11046 105 + . . scaffold42850 WUBlastX LINE_RTE-X 10738 11187 73 + . . scaffold42850 WUBlastX LINE_RTE-X 10831 11076 120 + . . scaffold42850 GLEAN mRNA 17113 27653 1 - . ID=CGI_10007919; scaffold42850 TRF Tandem_Repeat 23244 23593 551 + . . scaffold42850 GLEAN promoter 27654 28653 1 - . ID=CGI_10007919; scaffold42850 TRF Tandem_Repeat 35436 35465 60 + . . scaffold42850 GLEAN promoter 36000 36999 0.999461 + . ID=CGI_10007920; scaffold42850 GLEAN mRNA 37000 42572 0.999461 + . ID=CGI_10007920; scaffold42850 GLEAN mRNA 44102 69339 0.998379 - . ID=CGI_10007921; scaffold42850 TRF Tandem_Repeat 46347 47313 1569 + . . scaffold42850 TRF Tandem_Repeat 47300 47524 409 + . . scaffold42850 TRF Tandem_Repeat 47780 47842 126 + . . scaffold42850 GLEAN promoter 49025 50024 0.999668 + . ID=CGI_10007922; scaffold42850 GLEAN mRNA 50025 57940 0.999668 + . ID=CGI_10007922; scaffold42850 TRF Tandem_Repeat 52422 52453 64 + . . scaffold42850 TRF Tandem_Repeat 65430 65456 54 + . . scaffold42850 TRF Tandem_Repeat 66746 67593 1326 + . . scaffold42850 TRF Tandem_Repeat 66751 67044 66 + . . scaffold42850 TRF Tandem_Repeat 67876 67913 69 + . . scaffold42850 GLEAN promoter 68759 69758 0.992164 + . ID=CGI_10007923; scaffold42850 GLEAN promoter 69340 70339 0.998379 - . ID=CGI_10007921; scaffold42850 GLEAN mRNA 69759 81591 0.992164 + . ID=CGI_10007923; scaffold42850 GLEAN promoter 85168 86167 0.994914 + . ID=CGI_10007924; scaffold42850 GLEAN mRNA 86168 90362 0.994914 + . ID=CGI_10007924; scaffold42850 GLEAN mRNA 92004 96541 0.999998 - . ID=CGI_10007925; scaffold42850 GLEAN promoter 96542 97541 0.999998 - . ID=CGI_10007925; scaffold42850 TRF Tandem_Repeat 97202 97293 62 + . . scaffold42850 TRF Tandem_Repeat 97497 97560 56 + . . scaffold42850 GLEAN promoter 98053 99052 0.999999 + . ID=CGI_10007926; scaffold42850 GLEAN mRNA 99053 115365 0.999999 + . ID=CGI_10007926; scaffold42850 TRF Tandem_Repeat 106323 106487 226 + . . scaffold42850 GLEAN mRNA 114582 126316 0.222296 - . ID=CGI_10007927; scaffold42850 TRF Tandem_Repeat 117309 117452 85 + . . scaffold42850 TRF Tandem_Repeat 118463 119257 774 + . . scaffold42850 TRF Tandem_Repeat 119303 119340 60 + . . scaffold42850 TRF Tandem_Repeat 121536 121691 264 + . . scaffold42850 TRF Tandem_Repeat 123863 123916 63 + . . scaffold42850 TRF Tandem_Repeat 123864 123907 88 + . . scaffold42850 TRF Tandem_Repeat 124988 125510 331 + . . scaffold42850 GLEAN promoter 126317 127316 0.222296 - . ID=CGI_10007927; scaffold42850 GLEAN promoter 141425 142424 0.726799 + . ID=CGI_10007928; scaffold42850 GLEAN mRNA 142425 155838 0.726799 + . ID=CGI_10007928; scaffold42850 TRF Tandem_Repeat 149650 149904 198 + . . scaffold42850 GLEAN promoter 154870 155869 0.997577 + . ID=CGI_10007929; scaffold42850 GLEAN mRNA 155870 158176 0.997577 + . ID=CGI_10007929; scaffold42850 GLEAN promoter 164442 165441 0.441004 + . ID=CGI_10007930; scaffold42850 GLEAN mRNA 165442 194169 0.441004 + . ID=CGI_10007930; scaffold42850 GLEAN mRNA 177930 187194 0.973064 - . ID=CGI_10007931; scaffold42850 TRF Tandem_Repeat 182504 182817 628 + . . scaffold42850 GLEAN promoter 187195 188194 0.973064 - . ID=CGI_10007931; scaffold42850 TRF Tandem_Repeat 187706 187744 51 + . . scaffold42850 TRF Tandem_Repeat 187707 187744 67 + . . scaffold42850 TRF Tandem_Repeat 187914 188775 1400 + . . scaffold42850 TRF Tandem_Repeat 190025 190447 524 + . . scaffold42850 TRF Tandem_Repeat 193070 193545 717 + . . scaffold42850 TRF Tandem_Repeat 194280 194609 213 + . . scaffold42850 TRF Tandem_Repeat 194286 194609 219 + . . scaffold42866 GLEAN promoter 190 1189 0.69447 + . ID=CGI_10007987; scaffold42866 GLEAN mRNA 1190 1390 0.69447 + . ID=CGI_10007987; scaffold42866 GLEAN promoter 2312 3311 1 + . ID=CGI_10007988; scaffold42866 GLEAN promoter 3204 4203 0.99967 + . ID=CGI_10007989; scaffold42866 GLEAN mRNA 3312 4168 1 + . ID=CGI_10007988; scaffold42866 GLEAN mRNA 4204 26490 0.99967 + . ID=CGI_10007989; scaffold42866 WUBlastX LTR_Pao 5031 5417 64 - . . scaffold42866 WUBlastX LTR_Pao 5097 5465 314 - . . scaffold42866 WUBlastX LTR_Pao 5100 5678 286 - . . scaffold42866 TRF Tandem_Repeat 20210 20241 64 + . . scaffold42866 GLEAN promoter 27244 28243 0.999502 + . ID=CGI_10007990; scaffold42866 GLEAN mRNA 28244 41525 0.999502 + . ID=CGI_10007990; scaffold42866 TRF Tandem_Repeat 34492 34521 53 + . . scaffold42866 TRF Tandem_Repeat 39883 39929 51 + . . scaffold42866 GLEAN promoter 42150 43149 0.871395 + . ID=CGI_10007991; scaffold42866 GLEAN mRNA 43150 93731 0.871395 + . ID=CGI_10007991; scaffold42866 WUBlastX DNA_IS4EU 71251 71763 113 - . . scaffold42866 WUBlastX DNA_IS4EU 71251 72201 102 - . . scaffold42866 WUBlastX DNA_IS4EU 71332 71997 105 - . . scaffold42866 TRF Tandem_Repeat 73095 73158 128 + . . scaffold42866 TRF Tandem_Repeat 96316 96374 82 + . . scaffold42866 TRF Tandem_Repeat 96552 96598 94 + . . scaffold42866 TRF Tandem_Repeat 97608 97652 54 + . . scaffold42866 TRF Tandem_Repeat 97661 98628 1591 + . . scaffold42866 TRF Tandem_Repeat 100114 100180 71 + . . scaffold42866 GLEAN promoter 122468 123467 0.945167 + . ID=CGI_10007992; scaffold42866 GLEAN mRNA 123468 133153 0.945167 + . ID=CGI_10007992; scaffold42866 TRF Tandem_Repeat 124480 124532 106 + . . scaffold42866 TRF Tandem_Repeat 130219 130310 78 + . . scaffold42866 TRF Tandem_Repeat 130612 130705 125 + . . scaffold42866 TRF Tandem_Repeat 132061 132718 775 + . . scaffold42866 GLEAN promoter 132239 133238 0.999026 + . ID=CGI_10007993; scaffold42866 GLEAN mRNA 133239 156635 0.999026 + . ID=CGI_10007993; scaffold42866 TRF Tandem_Repeat 145790 145843 99 + . . scaffold42866 TRF Tandem_Repeat 149030 149139 122 + . . scaffold42866 WUBlastX LTR_Gypsy-Cigr 159015 159437 85 + . . scaffold42866 TRF Tandem_Repeat 161407 161476 131 + . . scaffold42866 TRF Tandem_Repeat 165274 165310 56 + . . scaffold42866 GLEAN mRNA 165416 166152 0.836634 - . ID=CGI_10007994; scaffold42866 GLEAN promoter 166153 167152 0.836634 - . ID=CGI_10007994; scaffold42866 WUBlastX LINE_L1-Tx1 190884 191840 427 + . . scaffold42866 WUBlastX LINE_L1 190977 191756 431 + . . scaffold42866 TRF Tandem_Repeat 194355 194391 56 + . . scaffold42866 GLEAN mRNA 194497 195233 0.592073 - . ID=CGI_10007995; scaffold42866 GLEAN promoter 195234 196233 0.592073 - . ID=CGI_10007995; scaffold42866 TRF Tandem_Repeat 195698 195733 72 + . . scaffold42880 GLEAN mRNA 10766 16259 0.539644 - . ID=CGI_10007996; scaffold42880 GLEAN promoter 16260 17259 0.539644 - . ID=CGI_10007996; scaffold42880 GLEAN mRNA 29055 29522 0.999999 - . ID=CGI_10007997; scaffold42880 WUBlastX LTR_Ngaro 29244 29876 61 - . . scaffold42880 WUBlastX LTR_Ngaro 29340 29783 219 - . . scaffold42880 WUBlastX LTR_Ngaro 29364 30206 97 - . . scaffold42880 GLEAN promoter 29523 30522 0.999999 - . ID=CGI_10007997; scaffold42880 TRF Tandem_Repeat 41221 41268 96 + . . scaffold42880 WUBlastX DNA_Harbinger 42471 42767 66 - . . scaffold42880 WUBlastX DNA_Harbinger 42576 42716 84 - . . scaffold42880 TRF Tandem_Repeat 45620 45714 91 + . . scaffold42880 TRF Tandem_Repeat 45620 45710 92 + . . scaffold42880 TRF Tandem_Repeat 45624 45686 81 + . . scaffold42880 TRF Tandem_Repeat 45672 45729 71 + . . scaffold42880 TRF Tandem_Repeat 45672 45729 71 + . . scaffold42880 TRF Tandem_Repeat 53821 53883 81 + . . scaffold42880 WUBlastX DNA_Maverick 55997 56101 44 + . . scaffold42880 WUBlastX LTR_Copia 56032 56484 76 + . . scaffold42880 WUBlastX DNA_Maverick 56119 57111 522 + . . scaffold42880 WUBlastX LTR_Gypsy 56977 57255 35 + . . scaffold42880 WUBlastX DNA_Maverick 57303 57542 53 + . . scaffold42880 WUBlastX DNA_Maverick 58034 58120 39 + . . scaffold42880 WUBlastX DNA_Maverick 58110 58796 343 + . . scaffold42880 WUBlastX DNA_Maverick 58802 59308 273 + . . scaffold42880 WUBlastX DNA_Maverick 59314 59850 84 + . . scaffold42880 WUBlastX DNA_Maverick 59314 59766 115 + . . scaffold42880 WUBlastX DNA_Maverick 59964 60599 351 + . . scaffold42880 WUBlastX DNA_Maverick 61623 63572 665 + . . scaffold42880 WUBlastX DNA_Maverick 61989 63575 862 + . . scaffold42880 WUBlastX DNA_Maverick 63545 64468 609 + . . scaffold42880 WUBlastX DNA_Maverick 64474 64848 226 + . . scaffold42880 WUBlastX DNA_Maverick 64806 65018 79 + . . scaffold42880 TRF Tandem_Repeat 68900 68993 143 + . . scaffold42880 TRF Tandem_Repeat 69217 69380 172 + . . scaffold42880 TRF Tandem_Repeat 69457 69548 94 + . . scaffold42880 TRF Tandem_Repeat 96223 96403 187 + . . scaffold42880 TRF Tandem_Repeat 97336 97501 219 + . . scaffold42880 TRF Tandem_Repeat 100508 100567 120 + . . scaffold42880 WUBlastX DNA_PiggyBac 112207 112722 40 + . . scaffold42880 WUBlastX DNA_PiggyBac 112294 112734 86 + . . scaffold42880 WUBlastX DNA_PiggyBac 112453 112734 107 + . . scaffold42880 WUBlastX DNA_PiggyBac 112639 112761 79 + . . scaffold42880 WUBlastX DNA_PiggyBac 113199 113330 67 + . . scaffold42880 WUBlastX DNA_PiggyBac 113723 113905 85 + . . scaffold42880 WUBlastX DNA_PiggyBac 113723 113941 65 + . . scaffold42880 WUBlastX DNA_PiggyBac 114506 114616 77 + . . scaffold42880 WUBlastX DNA_PiggyBac 114518 114676 63 + . . scaffold42880 WUBlastX DNA_PiggyBac 115088 115324 87 + . . scaffold42880 WUBlastX DNA_PiggyBac 115088 115411 62 + . . scaffold42880 WUBlastX DNA_PiggyBac 115103 115294 125 + . . scaffold42880 WUBlastX DNA_PiggyBac 115369 115629 54 + . . scaffold42880 WUBlastX DNA_PiggyBac 115459 115917 163 + . . scaffold42880 TRF Tandem_Repeat 119093 119143 86 + . . scaffold42880 WUBlastX LTR_Ngaro 144676 145062 35 - . . scaffold42880 WUBlastX LTR_Ngaro 145018 145314 27 - . . scaffold42880 WUBlastX LTR_Ngaro 145108 145347 78 - . . scaffold42880 WUBlastX LTR_Ngaro 145314 145505 58 - . . scaffold42880 WUBlastX LTR_Ngaro 145368 145496 62 - . . scaffold42880 TRF Tandem_Repeat 153969 154002 68 + . . scaffold42880 WUBlastX RC_Helitron 156933 158072 475 + . . scaffold42880 GLEAN mRNA 184633 197786 1 - . ID=CGI_10007998; scaffold42880 WUBlastX LINE_RTE-BovB 185430 185675 99 + . . scaffold42880 WUBlastX LINE_L1 185992 188925 1100 + . . scaffold42880 WUBlastX LINE_L1-Tx1 186826 188925 1176 + . . scaffold42880 TRF Tandem_Repeat 191551 192166 894 + . . scaffold42880 TRF Tandem_Repeat 191584 191653 50 + . . scaffold42880 GLEAN promoter 197787 198786 1 - . ID=CGI_10007998; scaffold42880 TRF Tandem_Repeat 198288 198325 58 + . . scaffold42890 TRF Tandem_Repeat 1808 1928 179 + . . scaffold42890 TRF Tandem_Repeat 5755 5796 75 + . . scaffold42890 GLEAN mRNA 7038 12287 0.987092 - . ID=CGI_10008034; scaffold42890 TRF Tandem_Repeat 7232 7277 92 + . . scaffold42890 GLEAN promoter 12288 13287 0.987092 - . ID=CGI_10008034; scaffold42890 TRF Tandem_Repeat 22296 22329 68 + . . scaffold42890 GLEAN mRNA 23072 24301 0.99965 - . ID=CGI_10008035; scaffold42890 GLEAN promoter 24302 25301 0.99965 - . ID=CGI_10008035; scaffold42890 GLEAN promoter 25312 26311 0.999994 + . ID=CGI_10008036; scaffold42890 GLEAN mRNA 26312 32180 0.999994 + . ID=CGI_10008036; scaffold42890 GLEAN promoter 32493 33492 0.999998 + . ID=CGI_10008037; scaffold42890 GLEAN mRNA 33493 34533 0.999998 + . ID=CGI_10008037; scaffold42890 GLEAN promoter 37017 38016 0.660882 + . ID=CGI_10008038; scaffold42890 GLEAN mRNA 38017 47331 0.660882 + . ID=CGI_10008038; scaffold42890 TRF Tandem_Repeat 40751 40803 97 + . . scaffold42890 TRF Tandem_Repeat 41000 41532 868 + . . scaffold42890 TRF Tandem_Repeat 46865 46912 87 + . . scaffold42890 TRF Tandem_Repeat 54922 55025 131 + . . scaffold42890 TRF Tandem_Repeat 67006 67062 114 + . . scaffold42890 TRF Tandem_Repeat 73110 73388 198 + . . scaffold42890 GLEAN promoter 75174 76173 0.99612 + . ID=CGI_10008039; scaffold42890 GLEAN mRNA 76174 91402 0.99612 + . ID=CGI_10008039; scaffold42890 TRF Tandem_Repeat 77126 77731 184 + . . scaffold42890 TRF Tandem_Repeat 77138 77413 254 + . . scaffold42890 WUBlastX LTR_Gypsy 80297 81070 402 - . . scaffold42890 WUBlastX LTR_Gypsy 80453 81937 534 - . . scaffold42890 WUBlastX LTR_Gypsy 81943 82377 367 - . . scaffold42890 WUBlastX LTR_Gypsy 82380 82724 354 - . . scaffold42890 GLEAN mRNA 82665 91191 0.716263 - . ID=CGI_10008040; scaffold42890 WUBlastX LTR_Gypsy 82709 84166 606 - . . scaffold42890 WUBlastX LINE_RTE-X 85531 85602 33 + . . scaffold42890 WUBlastX LINE_RTE-X 85984 86151 38 + . . scaffold42890 WUBlastX LINE_RTE-X 86014 86139 45 + . . scaffold42890 WUBlastX LINE_RTE-X 86432 86557 47 + . . scaffold42890 TRF Tandem_Repeat 90010 90111 77 + . . scaffold42890 TRF Tandem_Repeat 90483 90666 117 + . . scaffold42890 GLEAN promoter 91192 92191 0.716263 - . ID=CGI_10008040; scaffold42890 TRF Tandem_Repeat 92263 92294 64 + . . scaffold42890 GLEAN promoter 93275 94274 1 + . ID=CGI_10008041; scaffold42890 GLEAN mRNA 94275 105584 1 + . ID=CGI_10008041; scaffold42890 TRF Tandem_Repeat 104177 104290 210 + . . scaffold42890 TRF Tandem_Repeat 108549 108900 532 + . . scaffold42890 GLEAN mRNA 109231 127553 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 110183 110459 527 + . . scaffold42890 TRF Tandem_Repeat 110851 111054 354 + . . scaffold42890 TRF Tandem_Repeat 111589 111761 140 + . . scaffold42890 TRF Tandem_Repeat 117281 118029 683 + . . scaffold42890 TRF Tandem_Repeat 119438 119733 432 + . . scaffold42890 TRF Tandem_Repeat 119661 119733 59 + . . scaffold42890 TRF Tandem_Repeat 121701 121999 179 + . . scaffold42890 TRF Tandem_Repeat 121701 122267 440 + . . scaffold42890 TRF Tandem_Repeat 121726 121897 206 + . . scaffold42890 GLEAN promoter 127554 128553 0.999676 - . ID=CGI_10008042; scaffold42890 TRF Tandem_Repeat 128708 128776 95 + . . scaffold42890 GLEAN mRNA 133268 136847 0.733296 - . ID=CGI_10008043; scaffold42890 GLEAN promoter 136848 137847 0.733296 - . ID=CGI_10008043; scaffold42890 GLEAN mRNA 137226 148345 0.999999 - . ID=CGI_10008044; scaffold42890 TRF Tandem_Repeat 140657 141390 985 + . . scaffold42890 TRF Tandem_Repeat 142266 142864 966 + . . scaffold42890 GLEAN promoter 148346 149345 0.999999 - . ID=CGI_10008044; scaffold42890 TRF Tandem_Repeat 157511 157543 52 + . . scaffold42890 TRF Tandem_Repeat 160483 160524 50 + . . scaffold42890 TRF Tandem_Repeat 167319 168229 1498 + . . scaffold42890 GLEAN mRNA 182304 199068 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX DNA_hAT-hATw 182355 182765 41 - . . scaffold42890 WUBlastX DNA_Sola 183876 184016 26 - . . scaffold42890 WUBlastX DNA_Sola 183992 185536 274 - . . scaffold42890 WUBlastX DNA_Sola 184025 185131 339 - . . scaffold42890 WUBlastX LINE_L1 196453 196599 79 + . . scaffold42890 WUBlastX LINE_L1 196493 197026 125 + . . scaffold42890 WUBlastX LINE_L1-Tx1 196577 197038 171 + . . scaffold42890 WUBlastX LINE_L1-Tx1 197032 197091 61 + . . scaffold42890 GLEAN promoter 199069 200068 0.438528 - . ID=CGI_10008045; scaffold42890 WUBlastX LINE_L1 200197 200433 64 + . . scaffold42890 WUBlastX LINE_L1 200233 200460 100 + . . scaffold42890 WUBlastX LINE_L1-Tx1 200435 200515 34 + . . scaffold42890 WUBlastX LINE_L1 200435 200530 29 + . . scaffold42892 TRF Tandem_Repeat 501 540 80 + . . scaffold42892 WUBlastX LINE_RTE-X 2227 2358 33 - . . scaffold42892 WUBlastX LINE_RTE-X 2281 2358 39 - . . scaffold42892 WUBlastX LINE_RTE-X 2322 2519 77 - . . scaffold42892 WUBlastX LINE_RTE-X 2364 2897 25 - . . scaffold42892 WUBlastX LINE_RTE-X 2364 2621 58 - . . scaffold42892 GLEAN mRNA 3663 10565 0.99909 - . ID=CGI_10007999; scaffold42892 GLEAN promoter 10566 11565 0.99909 - . ID=CGI_10007999; scaffold42892 TRF Tandem_Repeat 29041 29093 90 + . . scaffold42892 GLEAN mRNA 35920 48117 0.990337 - . ID=CGI_10008000; scaffold42892 GLEAN promoter 48118 49117 0.990337 - . ID=CGI_10008000; scaffold42892 TRF Tandem_Repeat 51447 51507 122 + . . scaffold42892 GLEAN promoter 56398 57397 1 + . ID=CGI_10008001; scaffold42892 GLEAN mRNA 57398 62142 1 + . ID=CGI_10008001; scaffold42892 GLEAN promoter 65100 66099 1 + . ID=CGI_10008002; scaffold42892 GLEAN mRNA 66100 68010 1 + . ID=CGI_10008002; scaffold42892 TRF Tandem_Repeat 68184 68238 67 + . . scaffold42892 TRF Tandem_Repeat 68185 68241 80 + . . scaffold42892 TRF Tandem_Repeat 68411 69124 956 + . . scaffold42892 TRF Tandem_Repeat 72070 72207 193 + . . scaffold42892 GLEAN promoter 84199 85198 0.999646 + . ID=CGI_10008003; scaffold42892 GLEAN mRNA 85199 86803 0.999646 + . ID=CGI_10008003; scaffold42892 GLEAN promoter 92268 93267 0.997921 + . ID=CGI_10008004; scaffold42892 GLEAN mRNA 93268 94908 0.997921 + . ID=CGI_10008004; scaffold42892 TRF Tandem_Repeat 94396 94554 63 + . . scaffold42892 TRF Tandem_Repeat 94411 94542 51 + . . scaffold42892 TRF Tandem_Repeat 94496 94550 58 + . . scaffold42892 TRF Tandem_Repeat 96742 96778 65 + . . scaffold42892 TRF Tandem_Repeat 97597 97650 108 + . . scaffold42892 GLEAN promoter 99051 100050 0.993221 + . ID=CGI_10008005; scaffold42892 TRF Tandem_Repeat 99339 99376 76 + . . scaffold42892 GLEAN mRNA 100051 101568 0.993221 + . ID=CGI_10008005; scaffold42892 TRF Tandem_Repeat 103156 103196 73 + . . scaffold42892 WUBlastX LINE_L1-Tx1 104866 105546 335 + . . scaffold42892 WUBlastX LINE_L1-Tx1 105536 106774 199 + . . scaffold42892 GLEAN promoter 108607 109606 0.498928 + . ID=CGI_10008006; scaffold42892 GLEAN mRNA 109607 110719 0.498928 + . ID=CGI_10008006; scaffold42892 TRF Tandem_Repeat 114645 114669 50 + . . scaffold42892 TRF Tandem_Repeat 114710 114742 66 + . . scaffold42892 GLEAN promoter 125326 126325 0.956471 + . ID=CGI_10008007; scaffold42892 GLEAN mRNA 126326 134408 0.956471 + . ID=CGI_10008007; scaffold42892 TRF Tandem_Repeat 136568 136601 50 + . . scaffold42892 TRF Tandem_Repeat 136686 136730 90 + . . scaffold42892 GLEAN promoter 152770 153769 0.848258 + . ID=CGI_10008008; scaffold42892 GLEAN mRNA 153770 162955 0.848258 + . ID=CGI_10008008; scaffold42892 TRF Tandem_Repeat 166075 166356 223 + . . scaffold42892 TRF Tandem_Repeat 166075 166356 192 + . . scaffold42892 TRF Tandem_Repeat 168006 168063 116 + . . scaffold42892 TRF Tandem_Repeat 169716 169748 66 + . . scaffold42892 GLEAN mRNA 171421 180282 0.654238 - . ID=CGI_10008009; scaffold42892 TRF Tandem_Repeat 176556 176611 112 + . . scaffold42892 GLEAN promoter 180283 181282 0.654238 - . ID=CGI_10008009; scaffold42892 GLEAN mRNA 180298 193297 0.999949 - . ID=CGI_10008010; scaffold42892 GLEAN promoter 193298 194297 0.999949 - . ID=CGI_10008010; scaffold42892 TRF Tandem_Repeat 198056 198110 110 + . . scaffold42894 GLEAN mRNA 3909 8240 0.99733 - . ID=CGI_10008011; scaffold42894 GLEAN promoter 8241 9240 0.99733 - . ID=CGI_10008011; scaffold42894 GLEAN promoter 12782 13781 1 + . ID=CGI_10008012; scaffold42894 GLEAN mRNA 13782 18002 1 + . ID=CGI_10008012; scaffold42894 TRF Tandem_Repeat 16771 17498 581 + . . scaffold42894 TRF Tandem_Repeat 16784 17331 503 + . . scaffold42894 GLEAN mRNA 22804 26013 0.937424 - . ID=CGI_10008013; scaffold42894 GLEAN promoter 26014 27013 0.937424 - . ID=CGI_10008013; scaffold42894 TRF Tandem_Repeat 27540 27799 254 + . . scaffold42894 TRF Tandem_Repeat 29294 29436 136 + . . scaffold42894 TRF Tandem_Repeat 30747 31106 159 + . . scaffold42894 GLEAN promoter 35666 36665 1 + . ID=CGI_10008014; scaffold42894 GLEAN mRNA 36666 45397 1 + . ID=CGI_10008014; scaffold42894 GLEAN promoter 47204 48203 1 + . ID=CGI_10008015; scaffold42894 GLEAN mRNA 48204 50191 1 + . ID=CGI_10008015; scaffold42894 TRF Tandem_Repeat 51800 52482 675 + . . scaffold42894 GLEAN promoter 55338 56337 0.621545 + . ID=CGI_10008016; scaffold42894 GLEAN mRNA 56338 68041 0.621545 + . ID=CGI_10008016; scaffold42894 GLEAN mRNA 69541 76301 0.999996 - . ID=CGI_10008017; scaffold42894 GLEAN promoter 76302 77301 0.999996 - . ID=CGI_10008017; scaffold42894 GLEAN mRNA 76440 76685 0.999372 - . ID=CGI_10008018; scaffold42894 GLEAN promoter 76686 77685 0.999372 - . ID=CGI_10008018; scaffold42894 GLEAN mRNA 77739 85051 0.999994 - . ID=CGI_10008019; scaffold42894 GLEAN promoter 82970 83969 0.999676 + . ID=CGI_10008020; scaffold42894 GLEAN mRNA 83970 95617 0.999676 + . ID=CGI_10008020; scaffold42894 GLEAN promoter 85052 86051 0.999994 - . ID=CGI_10008019; scaffold42894 TRF Tandem_Repeat 86742 86794 70 + . . scaffold42894 TRF Tandem_Repeat 99811 99850 80 + . . scaffold42894 GLEAN promoter 104556 105555 0.933917 + . ID=CGI_10008021; scaffold42894 GLEAN mRNA 105556 113294 0.933917 + . ID=CGI_10008021; scaffold42894 TRF Tandem_Repeat 113054 113130 127 + . . scaffold42894 TRF Tandem_Repeat 113813 113850 58 + . . scaffold42894 TRF Tandem_Repeat 122966 123052 59 + . . scaffold42894 TRF Tandem_Repeat 123395 123439 74 + . . scaffold42894 WUBlastX LTR_DIRS 142525 143310 591 + . . scaffold42894 WUBlastX LTR_DIRS 143344 143754 267 + . . scaffold42894 WUBlastX LTR_DIRS 143727 144368 442 + . . scaffold42894 TRF Tandem_Repeat 146722 146777 94 + . . scaffold42894 WUBlastX LINE_CR1-L2 154658 154864 21 - . . scaffold42894 WUBlastX LINE_CR1-L2 154685 154849 68 - . . scaffold42894 WUBlastX LINE_CR1-L2 154914 155084 64 - . . scaffold42894 TRF Tandem_Repeat 163950 163983 59 + . . scaffold42894 WUBlastX LTR_DIRS 184778 184975 67 - . . scaffold42894 WUBlastX LTR_DIRS 184793 185428 47 - . . scaffold42894 WUBlastX LTR_DIRS 185255 185761 75 - . . scaffold42894 WUBlastX LTR_DIRS 185448 186452 142 - . . scaffold42894 WUBlastX LTR_DIRS 185874 186452 198 - . . scaffold42894 WUBlastX LTR_DIRS 186374 186541 39 - . . scaffold42894 WUBlastX LTR_DIRS 186613 187140 128 - . . scaffold42894 WUBlastX LTR_DIRS 186694 187236 69 - . . scaffold42894 WUBlastX LTR_DIRS 187122 187268 63 - . . scaffold42894 WUBlastX LTR_DIRS 187336 187401 23 - . . scaffold42894 TRF Tandem_Repeat 198866 198919 99 + . . scaffold42896 WUBlastX LINE_Penelope 2 169 66 + . . scaffold42896 WUBlastX LINE_Penelope 144 356 74 + . . scaffold42896 WUBlastX LINE_RTE-X 9075 9242 20 - . . scaffold42896 WUBlastX LINE_RTE-X 9102 9272 36 - . . scaffold42896 WUBlastX LINE_RTE-X 9138 9272 41 - . . scaffold42896 WUBlastX LINE_RTE-X 9707 9892 111 - . . scaffold42896 WUBlastX LINE_RTE-X 9904 10029 51 - . . scaffold42896 WUBlastX LINE_RTE-X 10286 10393 20 - . . scaffold42896 TRF Tandem_Repeat 16273 16336 128 + . . scaffold42896 TRF Tandem_Repeat 17788 17841 90 + . . scaffold42896 TRF Tandem_Repeat 27945 27990 92 + . . scaffold42896 TRF Tandem_Repeat 38455 38522 66 + . . scaffold42896 TRF Tandem_Repeat 38476 38522 58 + . . scaffold42896 GLEAN promoter 63423 64422 0.482336 + . ID=CGI_10008134; scaffold42896 GLEAN mRNA 64423 83800 0.482336 + . ID=CGI_10008134; scaffold42896 TRF Tandem_Repeat 85799 85842 63 + . . scaffold42896 TRF Tandem_Repeat 90600 90638 78 + . . scaffold42896 TRF Tandem_Repeat 102265 103233 1359 + . . scaffold42896 WUBlastX LINE_L1-Tx1 106341 106985 135 - . . scaffold42896 WUBlastX LINE_L1-Tx1 106963 107919 298 - . . scaffold42896 WUBlastX LINE_L1 108994 109368 62 - . . scaffold42896 WUBlastX LINE_L1-Tx1 109078 109401 99 - . . scaffold42896 WUBlastX LINE_L1-Tx1 109129 109401 140 - . . scaffold42896 WUBlastX LINE_L1-Tx1 109320 109895 253 - . . scaffold42896 WUBlastX LINE_L1-Tx1 109452 109925 383 - . . scaffold42896 WUBlastX LINE_L1-Tx1 109744 110817 485 - . . scaffold42896 TRF Tandem_Repeat 113178 113218 50 + . . scaffold42896 TRF Tandem_Repeat 118847 118892 56 + . . scaffold42896 TRF Tandem_Repeat 118850 118900 50 + . . scaffold42896 TRF Tandem_Repeat 119170 119203 68 + . . scaffold42896 GLEAN promoter 122353 123352 0.593384 + . ID=CGI_10008135; scaffold42896 GLEAN mRNA 123353 123823 0.593384 + . ID=CGI_10008135; scaffold42896 WUBlastX LINE_L1-Tx1 123896 124192 47 + . . scaffold42896 WUBlastX LINE_L1-Tx1 123950 124180 137 + . . scaffold42896 WUBlastX LINE_L1-Tx1 124110 124511 106 + . . scaffold42896 WUBlastX LINE_L1-Tx1 124510 125052 143 + . . scaffold42896 WUBlastX LINE_L1-Tx1 125043 126122 232 + . . scaffold42896 WUBlastX LINE_L1 125538 126125 304 + . . scaffold42896 WUBlastX LINE_L1-Tx1 126176 126721 168 + . . scaffold42896 WUBlastX LINE_L1-Tx1 126176 126562 186 + . . scaffold42896 WUBlastX LINE_L1-Tx1 126729 126941 48 + . . scaffold42896 WUBlastX LINE_L1 126771 127025 28 + . . scaffold42896 WUBlastX LINE_L1-Tx1 127729 127866 30 + . . scaffold42896 WUBlastX LINE_RTE-X 132550 132840 78 - . . scaffold42896 WUBlastX LINE_RTE-X 132595 132873 132 - . . scaffold42896 WUBlastX LINE_RTE-X 132893 133897 469 - . . scaffold42896 GLEAN mRNA 134132 135000 0.593255 - . ID=CGI_10008137; scaffold42896 GLEAN promoter 135001 136000 0.593255 - . ID=CGI_10008137; scaffold42896 TRF Tandem_Repeat 137723 137793 142 + . . scaffold42896 WUBlastX LINE_L1-Tx1 140615 141433 263 + . . scaffold42896 TRF Tandem_Repeat 157667 157788 93 + . . scaffold42896 GLEAN mRNA 159672 184196 0.527325 - . ID=CGI_10008138; scaffold42896 TRF Tandem_Repeat 164867 164913 94 + . . scaffold42896 TRF Tandem_Repeat 168438 168475 76 + . . scaffold42896 GLEAN promoter 184197 185196 0.527325 - . ID=CGI_10008138; scaffold42896 TRF Tandem_Repeat 194590 194629 71 + . . scaffold42896 WUBlastX LINE_Penelope 198311 198427 26 + . . scaffold42896 WUBlastX LINE_Penelope 198369 198959 260 + . . scaffold42896 WUBlastX LINE_Penelope 198928 199041 76 + . . scaffold42896 TRF Tandem_Repeat 201118 201342 265 + . . scaffold42896 WUBlastX LINE_Penelope 201903 202190 33 + . . scaffold42904 TRF Tandem_Repeat 1301 1332 55 + . . scaffold42904 GLEAN mRNA 4129 9768 0.997583 - . ID=CGI_10008096; scaffold42904 GLEAN promoter 9769 10768 0.997583 - . ID=CGI_10008096; scaffold42904 TRF Tandem_Repeat 10155 10180 52 + . . scaffold42904 TRF Tandem_Repeat 12353 12383 62 + . . scaffold42904 TRF Tandem_Repeat 22165 22194 60 + . . scaffold42904 TRF Tandem_Repeat 22212 22236 50 + . . scaffold42904 TRF Tandem_Repeat 26255 26283 58 + . . scaffold42904 GLEAN promoter 29094 30093 0.999919 + . ID=CGI_10008097; scaffold42904 GLEAN mRNA 30094 35171 0.999919 + . ID=CGI_10008097; scaffold42904 TRF Tandem_Repeat 31501 31700 104 + . . scaffold42904 TRF Tandem_Repeat 31502 31618 128 + . . scaffold42904 TRF Tandem_Repeat 31701 31872 164 + . . scaffold42904 TRF Tandem_Repeat 35597 35787 180 + . . scaffold42904 GLEAN promoter 38898 39897 0.830856 + . ID=CGI_10008098; scaffold42904 TRF Tandem_Repeat 38914 38942 51 + . . scaffold42904 GLEAN mRNA 39898 45913 0.830856 + . ID=CGI_10008098; scaffold42904 WUBlastX LTR_DIRS? 43592 43687 35 + . . scaffold42904 WUBlastX LTR_DIRS 43690 43869 88 + . . scaffold42904 WUBlastX LTR_DIRS 43881 44162 177 + . . scaffold42904 GLEAN mRNA 48148 65540 0.650923 - . ID=CGI_10008099; scaffold42904 TRF Tandem_Repeat 50263 50375 65 + . . scaffold42904 GLEAN promoter 65541 66540 0.650923 - . ID=CGI_10008099; scaffold42904 GLEAN mRNA 65915 76411 0.945642 - . ID=CGI_10008100; scaffold42904 GLEAN promoter 68773 69772 1 + . ID=CGI_10008101; scaffold42904 GLEAN mRNA 69773 72914 1 + . ID=CGI_10008101; scaffold42904 TRF Tandem_Repeat 74423 74450 56 + . . scaffold42904 GLEAN promoter 75483 76482 0.962228 + . ID=CGI_10008102; scaffold42904 GLEAN promoter 76412 77411 0.945642 - . ID=CGI_10008100; scaffold42904 GLEAN mRNA 76483 76977 0.962228 + . ID=CGI_10008102; scaffold42904 GLEAN mRNA 87880 118208 0.944676 - . ID=CGI_10008103; scaffold42904 WUBlastX LTR_Copia 94472 95047 32 - . . scaffold42904 WUBlastX DNA_Kolobok 101959 102522 77 + . . scaffold42904 WUBlastX LINE_RTE-X 103388 103537 35 + . . scaffold42904 WUBlastX LINE_RTE-X 103409 103585 33 + . . scaffold42904 GLEAN promoter 118209 119208 0.944676 - . ID=CGI_10008103; scaffold42904 GLEAN promoter 120582 121581 0.558407 + . ID=CGI_10008104; scaffold42904 GLEAN mRNA 121582 122900 0.558407 + . ID=CGI_10008104; scaffold42904 GLEAN promoter 127278 128277 1 + . ID=CGI_10008105; scaffold42904 GLEAN mRNA 128278 140606 1 + . ID=CGI_10008105; scaffold42904 TRF Tandem_Repeat 143111 146080 3889 + . . scaffold42904 TRF Tandem_Repeat 143111 146080 3871 + . . scaffold42904 TRF Tandem_Repeat 143111 146080 3156 + . . scaffold42904 TRF Tandem_Repeat 151564 151609 92 + . . scaffold42904 GLEAN promoter 154335 155334 0.999338 + . ID=CGI_10008106; scaffold42904 GLEAN mRNA 155335 177313 0.999338 + . ID=CGI_10008106; scaffold42904 TRF Tandem_Repeat 157392 157444 52 + . . scaffold42904 TRF Tandem_Repeat 162254 163243 848 + . . scaffold42904 TRF Tandem_Repeat 166686 167347 946 + . . scaffold42904 GLEAN promoter 191756 192755 0.996819 + . ID=CGI_10008107; scaffold42904 GLEAN mRNA 192756 199102 0.996819 + . ID=CGI_10008107; scaffold42904 TRF Tandem_Repeat 193971 194020 100 + . . scaffold42918 GLEAN mRNA 1190 8530 0.998793 - . ID=CGI_10008112; scaffold42918 GLEAN promoter 8531 9530 0.998793 - . ID=CGI_10008112; scaffold42918 GLEAN mRNA 11972 18970 0.950246 - . ID=CGI_10008113; scaffold42918 GLEAN promoter 18971 19970 0.950246 - . ID=CGI_10008113; scaffold42918 GLEAN mRNA 24218 46072 0.723036 - . ID=CGI_10008114; scaffold42918 GLEAN promoter 46073 47072 0.723036 - . ID=CGI_10008114; scaffold42918 GLEAN mRNA 46173 47245 0.999983 - . ID=CGI_10008115; scaffold42918 GLEAN promoter 47246 48245 0.999983 - . ID=CGI_10008115; scaffold42918 GLEAN mRNA 50467 50679 1 - . ID=CGI_10008116; scaffold42918 GLEAN promoter 50680 51679 1 - . ID=CGI_10008116; scaffold42918 GLEAN mRNA 55344 100016 0.999675 - . ID=CGI_10008117; scaffold42918 GLEAN promoter 100017 101016 0.999675 - . ID=CGI_10008117; scaffold42918 GLEAN mRNA 122888 127427 1 - . ID=CGI_10008118; scaffold42918 GLEAN promoter 127428 128427 1 - . ID=CGI_10008118; scaffold42918 GLEAN mRNA 157420 161835 1 - . ID=CGI_10008119; scaffold42918 GLEAN promoter 161836 162835 1 - . ID=CGI_10008119; scaffold42918 GLEAN promoter 165433 166432 1 + . ID=CGI_10008120; scaffold42918 GLEAN mRNA 166433 167758 1 + . ID=CGI_10008120; scaffold42918 GLEAN promoter 200614 201613 0.5 + . ID=CGI_10008121; scaffold42918 GLEAN mRNA 201614 201991 0.5 + . ID=CGI_10008121; scaffold42922 WUBlastX LTR_Gypsy 1332 1667 118 - . . scaffold42922 WUBlastX LTR_Gypsy 1509 1727 85 - . . scaffold42922 WUBlastX LTR_Gypsy 1676 1747 54 - . . scaffold42922 WUBlastX LINE_CR1-L2 1777 2481 97 + . . scaffold42922 WUBlastX LINE_CR1-L2 2535 3410 525 + . . scaffold42922 WUBlastX LINE_CR1 3366 3458 20 + . . scaffold42922 WUBlastX LINE_L2 3448 4392 432 + . . scaffold42922 WUBlastX LTR_Gypsy 5004 5090 27 - . . scaffold42922 WUBlastX LTR_Gypsy 5019 5132 34 - . . scaffold42922 WUBlastX LTR_Gypsy 5140 6120 291 - . . scaffold42922 WUBlastX LTR_Gypsy 5812 6393 90 - . . scaffold42922 WUBlastX LTR_Gypsy 5818 6267 118 - . . scaffold42922 WUBlastX LTR_Gypsy 6637 6867 28 - . . scaffold42922 GLEAN promoter 13765 14764 0.730139 + . ID=CGI_10008150; scaffold42922 GLEAN mRNA 14765 26541 0.730139 + . ID=CGI_10008150; scaffold42922 TRF Tandem_Repeat 17979 18029 102 + . . scaffold42922 TRF Tandem_Repeat 28581 28618 69 + . . scaffold42922 TRF Tandem_Repeat 30701 30741 73 + . . scaffold42922 GLEAN mRNA 32313 42865 0.593188 - . ID=CGI_10008151; scaffold42922 TRF Tandem_Repeat 34593 34918 459 + . . scaffold42922 GLEAN promoter 42487 43486 1 + . ID=CGI_10008152; scaffold42922 GLEAN promoter 42866 43865 0.593188 - . ID=CGI_10008151; scaffold42922 GLEAN mRNA 43487 45369 1 + . ID=CGI_10008152; scaffold42922 GLEAN mRNA 48102 54056 0.999676 - . ID=CGI_10008153; scaffold42922 TRF Tandem_Repeat 48959 49107 235 + . . scaffold42922 TRF Tandem_Repeat 49022 49110 79 + . . scaffold42922 GLEAN promoter 50952 51951 0.971785 + . ID=CGI_10008154; scaffold42922 GLEAN mRNA 51952 59517 0.971785 + . ID=CGI_10008154; scaffold42922 TRF Tandem_Repeat 52215 52252 76 + . . scaffold42922 TRF Tandem_Repeat 53520 53587 59 + . . scaffold42922 GLEAN promoter 54057 55056 0.999676 - . ID=CGI_10008153; scaffold42922 GLEAN mRNA 89044 140032 0.999243 - . ID=CGI_10008155; scaffold42922 TRF Tandem_Repeat 125306 125569 258 + . . scaffold42922 TRF Tandem_Repeat 126118 126302 352 + . . scaffold42922 TRF Tandem_Repeat 126330 126478 271 + . . scaffold42922 GLEAN promoter 139554 140553 0.999611 + . ID=CGI_10008156; scaffold42922 GLEAN promoter 140033 141032 0.999243 - . ID=CGI_10008155; scaffold42922 GLEAN mRNA 140554 144364 0.999611 + . ID=CGI_10008156; scaffold42922 WUBlastX LINE_RTE-BovB 146215 146607 69 + . . scaffold42922 WUBlastX LINE_RTE-BovB 146805 146981 50 + . . scaffold42922 WUBlastX LINE_RTE-BovB 146972 147400 74 + . . scaffold42922 WUBlastX LINE_RTE-BovB 147127 147498 34 + . . scaffold42922 WUBlastX LINE_RTE-BovB 147564 147764 53 + . . scaffold42922 GLEAN promoter 150588 151587 0.996198 + . ID=CGI_10008157; scaffold42922 GLEAN mRNA 151588 155986 0.996198 + . ID=CGI_10008157; scaffold42922 GLEAN mRNA 159610 171563 0.770846 - . ID=CGI_10008158; scaffold42922 TRF Tandem_Repeat 165215 165329 105 + . . scaffold42922 TRF Tandem_Repeat 166040 166435 294 + . . scaffold42922 GLEAN promoter 171564 172563 0.770846 - . ID=CGI_10008158; scaffold42922 WUBlastX LINE_RTE-X 186225 186533 70 + . . scaffold42922 TRF Tandem_Repeat 188410 188785 572 + . . scaffold42922 TRF Tandem_Repeat 190293 190351 64 + . . scaffold42924 TRF Tandem_Repeat 457 876 421 + . . scaffold42924 TRF Tandem_Repeat 1864 2654 1234 + . . scaffold42924 GLEAN mRNA 22834 34319 0.999998 - . ID=CGI_10008184; scaffold42924 TRF Tandem_Repeat 28318 28361 52 + . . scaffold42924 TRF Tandem_Repeat 29973 30034 63 + . . scaffold42924 GLEAN promoter 34320 35319 0.999998 - . ID=CGI_10008184; scaffold42924 GLEAN mRNA 34345 67833 0.434676 - . ID=CGI_10008185; scaffold42924 TRF Tandem_Repeat 37348 37384 74 + . . scaffold42924 WUBlastX LINE_L1-Tx1 39629 40861 647 - . . scaffold42924 TRF Tandem_Repeat 53122 53157 56 + . . scaffold42924 TRF Tandem_Repeat 64464 64533 140 + . . scaffold42924 GLEAN promoter 67834 68833 0.434676 - . ID=CGI_10008185; scaffold42924 GLEAN mRNA 68678 77882 0.665568 - . ID=CGI_10008186; scaffold42924 GLEAN promoter 77883 78882 0.665568 - . ID=CGI_10008186; scaffold42924 GLEAN mRNA 82948 85997 0.999622 - . ID=CGI_10008187; scaffold42924 GLEAN promoter 85998 86997 0.999622 - . ID=CGI_10008187; scaffold42924 GLEAN mRNA 86663 94255 0.99962 - . ID=CGI_10008188; scaffold42924 GLEAN promoter 94256 95255 0.99962 - . ID=CGI_10008188; scaffold42924 GLEAN mRNA 98464 113980 0.999676 - . ID=CGI_10008189; scaffold42924 TRF Tandem_Repeat 102633 103548 1153 + . . scaffold42924 TRF Tandem_Repeat 105301 105370 88 + . . scaffold42924 GLEAN promoter 113981 114980 0.999676 - . ID=CGI_10008189; scaffold42924 GLEAN mRNA 119395 144961 0.884906 - . ID=CGI_10008190; scaffold42924 GLEAN promoter 144962 145961 0.884906 - . ID=CGI_10008190; scaffold42924 TRF Tandem_Repeat 145585 145690 90 + . . scaffold42924 TRF Tandem_Repeat 145586 145635 57 + . . scaffold42924 TRF Tandem_Repeat 146019 146047 58 + . . scaffold42924 TRF Tandem_Repeat 147186 147248 90 + . . scaffold42924 GLEAN mRNA 151466 175752 0.999229 - . ID=CGI_10008191; scaffold42924 TRF Tandem_Repeat 163567 163607 73 + . . scaffold42924 TRF Tandem_Repeat 169965 170013 89 + . . scaffold42924 TRF Tandem_Repeat 170563 170619 53 + . . scaffold42924 TRF Tandem_Repeat 171030 171062 66 + . . scaffold42924 GLEAN promoter 175753 176752 0.999229 - . ID=CGI_10008191; scaffold42924 TRF Tandem_Repeat 185686 185840 85 + . . scaffold42930 TRF Tandem_Repeat 3692 3739 96 + . . scaffold42930 TRF Tandem_Repeat 8186 8221 72 + . . scaffold42930 GLEAN promoter 11307 12306 0.996819 + . ID=CGI_10008122; scaffold42930 GLEAN mRNA 12307 15118 0.996819 + . ID=CGI_10008122; scaffold42930 GLEAN mRNA 17789 45450 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 27906 27985 151 + . . scaffold42930 TRF Tandem_Repeat 30041 30074 68 + . . scaffold42930 TRF Tandem_Repeat 31133 31189 107 + . . scaffold42930 TRF Tandem_Repeat 31133 31183 66 + . . scaffold42930 TRF Tandem_Repeat 36305 36580 516 + . . scaffold42930 TRF Tandem_Repeat 36558 36671 228 + . . scaffold42930 TRF Tandem_Repeat 42590 43275 958 + . . scaffold42930 TRF Tandem_Repeat 43642 43830 117 + . . scaffold42930 GLEAN promoter 45451 46450 0.791418 - . ID=CGI_10008123; scaffold42930 TRF Tandem_Repeat 48916 49005 157 + . . scaffold42930 TRF Tandem_Repeat 54859 54980 84 + . . scaffold42930 TRF Tandem_Repeat 55868 55898 62 + . . scaffold42930 TRF Tandem_Repeat 56190 56241 104 + . . scaffold42930 TRF Tandem_Repeat 57619 57656 76 + . . scaffold42930 TRF Tandem_Repeat 59143 59183 82 + . . scaffold42930 GLEAN promoter 60087 61086 0.618241 + . ID=CGI_10008124; scaffold42930 GLEAN mRNA 61087 61314 0.618241 + . ID=CGI_10008124; scaffold42930 TRF Tandem_Repeat 61582 61608 54 + . . scaffold42930 WUBlastX LINE_RTE-X 80168 80380 48 - . . scaffold42930 WUBlastX LINE_RTE-X 80210 80602 71 - . . scaffold42930 WUBlastX LINE_RTE-X 80766 80855 21 - . . scaffold42930 TRF Tandem_Repeat 83995 84809 1304 + . . scaffold42930 GLEAN promoter 94980 95979 0.999676 + . ID=CGI_10008125; scaffold42930 GLEAN mRNA 95980 99992 0.999676 + . ID=CGI_10008125; scaffold42930 TRF Tandem_Repeat 98062 98101 80 + . . scaffold42930 TRF Tandem_Repeat 98101 98142 84 + . . scaffold42930 GLEAN mRNA 101813 104780 1 - . ID=CGI_10008126; scaffold42930 GLEAN promoter 104781 105780 1 - . ID=CGI_10008126; scaffold42930 TRF Tandem_Repeat 107891 108060 155 + . . scaffold42930 TRF Tandem_Repeat 110947 111028 92 + . . scaffold42930 TRF Tandem_Repeat 110947 111028 92 + . . scaffold42930 TRF Tandem_Repeat 110948 111041 88 + . . scaffold42930 TRF Tandem_Repeat 110960 111040 71 + . . scaffold42930 TRF Tandem_Repeat 112552 113704 1049 + . . scaffold42930 TRF Tandem_Repeat 115848 115895 69 + . . scaffold42930 TRF Tandem_Repeat 116934 116974 82 + . . scaffold42930 TRF Tandem_Repeat 118632 118762 112 + . . scaffold42930 TRF Tandem_Repeat 118666 118780 90 + . . scaffold42930 WUBlastX LTR_Copia 120764 120880 39 - . . scaffold42930 WUBlastX LTR_Gypsy 120785 122275 406 - . . scaffold42930 WUBlastX LTR_Gypsy 121010 124432 2191 - . . scaffold42930 WUBlastX LTR_Gypsy 124441 124785 65 - . . scaffold42930 WUBlastX LTR_Gypsy 124516 124785 71 - . . scaffold42930 WUBlastX LTR_Gypsy 124516 124908 63 - . . scaffold42930 WUBlastX DNA_Maverick 128196 129047 233 - . . scaffold42930 WUBlastX DNA_Maverick 128340 129281 473 - . . scaffold42930 WUBlastX DNA_Maverick 130239 130397 99 - . . scaffold42930 WUBlastX DNA_Maverick 131001 131582 158 - . . scaffold42930 WUBlastX DNA_Maverick 131303 131503 187 - . . scaffold42930 WUBlastX DNA_Maverick 132408 132596 22 - . . scaffold42930 WUBlastX DNA_Maverick 132461 132586 51 - . . scaffold42930 WUBlastX DNA_Maverick 132488 132742 232 - . . scaffold42930 WUBlastX DNA_Maverick 132706 132996 186 - . . scaffold42930 WUBlastX DNA_Maverick 132975 133898 443 - . . scaffold42930 WUBlastX DNA_Maverick 133897 135264 368 - . . scaffold42930 WUBlastX DNA_Maverick 135316 135693 87 - . . scaffold42930 WUBlastX DNA_Maverick 135382 135729 227 - . . scaffold42930 WUBlastX LINE_L1 139193 139330 21 - . . scaffold42930 WUBlastX LINE_RTE-X 139449 139493 26 - . . scaffold42930 WUBlastX LINE_RTE-X 140016 140708 37 - . . scaffold42930 WUBlastX LINE_RTE-X 140247 140825 68 - . . scaffold42930 TRF Tandem_Repeat 145335 145388 108 + . . scaffold42930 TRF Tandem_Repeat 157002 157039 76 + . . scaffold42930 TRF Tandem_Repeat 179235 179308 94 + . . scaffold42930 WUBlastX LINE_L1-Tx1 196628 197779 102 - . . scaffold42930 WUBlastX LINE_L1-Tx1 197459 197776 115 - . . scaffold42930 WUBlastX LINE_L1 197480 197842 113 - . . scaffold42946 GLEAN promoter 1 110 0.999581 + . ID=CGI_10008168; scaffold42946 GLEAN mRNA 111 3604 0.999581 + . ID=CGI_10008168; scaffold42946 TRF Tandem_Repeat 4438 4510 146 + . . scaffold42946 TRF Tandem_Repeat 13743 13792 100 + . . scaffold42946 TRF Tandem_Repeat 14919 14956 76 + . . scaffold42946 GLEAN promoter 15674 16673 0.638186 + . ID=CGI_10008169; scaffold42946 TRF Tandem_Repeat 16139 16171 57 + . . scaffold42946 GLEAN mRNA 16674 26489 0.638186 + . ID=CGI_10008169; scaffold42946 TRF Tandem_Repeat 20912 21494 402 + . . scaffold42946 WUBlastX DNA_TcMar-Tc1 31852 32022 36 - . . scaffold42946 WUBlastX DNA_TcMar-Tc1 31894 32022 41 - . . scaffold42946 WUBlastX DNA_TcMar-Tc1 32006 32230 43 - . . scaffold42946 GLEAN promoter 32025 33024 0.459933 + . ID=CGI_10008170; scaffold42946 WUBlastX DNA_TcMar-Tc1 32063 32245 55 - . . scaffold42946 WUBlastX DNA_TcMar-Tc1 32473 32622 44 - . . scaffold42946 WUBlastX DNA_TcMar-Tc1 32473 32661 30 - . . scaffold42946 GLEAN mRNA 33025 55751 0.459933 + . ID=CGI_10008170; scaffold42946 TRF Tandem_Repeat 33612 33646 61 + . . scaffold42946 WUBlastX LINE_L1 35404 36003 51 - . . scaffold42946 WUBlastX LINE_L1 35515 35988 98 - . . scaffold42946 WUBlastX LINE_L1-Tx1 35659 35988 124 - . . scaffold42946 GLEAN mRNA 41655 45441 1 - . ID=CGI_10008171; scaffold42946 GLEAN promoter 45442 46441 1 - . ID=CGI_10008171; scaffold42946 TRF Tandem_Repeat 53859 53894 63 + . . scaffold42946 GLEAN promoter 55372 56371 0.999676 + . ID=CGI_10008172; scaffold42946 GLEAN mRNA 56372 64224 0.999676 + . ID=CGI_10008172; scaffold42946 GLEAN promoter 64633 65632 0.738558 + . ID=CGI_10008173; scaffold42946 GLEAN mRNA 65633 74732 0.738558 + . ID=CGI_10008173; scaffold42946 WUBlastX LTR_Pao 80564 80644 25 - . . scaffold42946 WUBlastX LTR_Pao 80629 80967 177 - . . scaffold42946 GLEAN promoter 80684 81683 0.738459 + . ID=CGI_10008174; scaffold42946 WUBlastX LTR_Pao 80969 81043 31 - . . scaffold42946 GLEAN mRNA 81684 88921 0.738459 + . ID=CGI_10008174; scaffold42946 GLEAN promoter 88088 89087 1 + . ID=CGI_10008175; scaffold42946 GLEAN mRNA 89088 90133 1 + . ID=CGI_10008175; scaffold42946 TRF Tandem_Repeat 94986 95072 174 + . . scaffold42946 TRF Tandem_Repeat 96377 96425 98 + . . scaffold42946 GLEAN promoter 102111 103110 1 + . ID=CGI_10008176; scaffold42946 GLEAN mRNA 103111 106192 1 + . ID=CGI_10008176; scaffold42946 TRF Tandem_Repeat 111980 112084 69 + . . scaffold42946 TRF Tandem_Repeat 112639 112775 142 + . . scaffold42946 GLEAN promoter 113783 114782 1 + . ID=CGI_10008177; scaffold42946 GLEAN mRNA 114783 123739 1 + . ID=CGI_10008177; scaffold42946 TRF Tandem_Repeat 116950 117000 102 + . . scaffold42946 TRF Tandem_Repeat 119358 119472 83 + . . scaffold42946 TRF Tandem_Repeat 127824 127859 54 + . . scaffold42946 GLEAN promoter 129159 130158 0.692184 + . ID=CGI_10008178; scaffold42946 GLEAN mRNA 130159 151397 0.692184 + . ID=CGI_10008178; scaffold42946 GLEAN promoter 150411 151410 0.994683 + . ID=CGI_10008179; scaffold42946 GLEAN mRNA 151411 155770 0.994683 + . ID=CGI_10008179; scaffold42946 TRF Tandem_Repeat 158018 158068 102 + . . scaffold42946 WUBlastX LINE_RTE-X 159703 159882 27 - . . scaffold42946 GLEAN promoter 159748 160747 1 + . ID=CGI_10008180; scaffold42946 WUBlastX LINE_RTE-X 160202 160270 49 - . . scaffold42946 GLEAN mRNA 160748 164242 1 + . ID=CGI_10008180; scaffold42946 GLEAN mRNA 165116 169100 0.999947 - . ID=CGI_10008181; scaffold42946 GLEAN promoter 169101 170100 0.999947 - . ID=CGI_10008181; scaffold42946 GLEAN mRNA 169262 178666 0.913693 - . ID=CGI_10008182; scaffold42946 GLEAN promoter 178667 179666 0.913693 - . ID=CGI_10008182; scaffold42946 GLEAN mRNA 186410 198328 0.388265 - . ID=CGI_10008183; scaffold42946 TRF Tandem_Repeat 192339 192417 81 + . . scaffold42946 TRF Tandem_Repeat 192346 192417 75 + . . scaffold42946 GLEAN promoter 198329 199328 0.388265 - . ID=CGI_10008183; scaffold42946 WUBlastX DNA_Crypton 201664 201903 43 + . . scaffold42946 WUBlastX DNA_Crypton 202065 202154 55 + . . scaffold42946 WUBlastX DNA_Crypton 202198 202359 67 + . . scaffold42948 GLEAN mRNA 2143 5522 1 - . ID=CGI_10008217; scaffold42948 TRF Tandem_Repeat 3120 3179 84 + . . scaffold42948 GLEAN promoter 5523 6522 1 - . ID=CGI_10008217; scaffold42948 TRF Tandem_Repeat 6526 6560 70 + . . scaffold42948 GLEAN promoter 7275 8274 1 + . ID=CGI_10008218; scaffold42948 GLEAN mRNA 8275 8556 1 + . ID=CGI_10008218; scaffold42948 TRF Tandem_Repeat 9000 9038 60 + . . scaffold42948 TRF Tandem_Repeat 9370 9430 122 + . . scaffold42948 GLEAN promoter 11619 12618 0.999989 + . ID=CGI_10008219; scaffold42948 GLEAN mRNA 12619 19905 0.999989 + . ID=CGI_10008219; scaffold42948 TRF Tandem_Repeat 14184 14242 118 + . . scaffold42948 GLEAN mRNA 14858 16624 0.593383 - . ID=CGI_10008220; scaffold42948 GLEAN promoter 16625 17624 0.593383 - . ID=CGI_10008220; scaffold42948 GLEAN promoter 21212 22211 0.999277 + . ID=CGI_10008221; scaffold42948 GLEAN mRNA 22212 26599 0.999277 + . ID=CGI_10008221; scaffold42948 GLEAN promoter 25605 26604 0.913626 + . ID=CGI_10008222; scaffold42948 GLEAN mRNA 26605 37566 0.913626 + . ID=CGI_10008222; scaffold42948 TRF Tandem_Repeat 26805 26841 74 + . . scaffold42948 TRF Tandem_Repeat 28676 28713 51 + . . scaffold42948 TRF Tandem_Repeat 31421 31459 78 + . . scaffold42948 TRF Tandem_Repeat 33362 33394 66 + . . scaffold42948 TRF Tandem_Repeat 33638 33690 106 + . . scaffold42948 TRF Tandem_Repeat 34952 35001 91 + . . scaffold42948 WUBlastX DNA_hAT 35872 37212 387 + . . scaffold42948 TRF Tandem_Repeat 40500 40535 72 + . . scaffold42948 GLEAN promoter 41228 42227 0.99883 + . ID=CGI_10008223; scaffold42948 TRF Tandem_Repeat 41713 41762 100 + . . scaffold42948 GLEAN mRNA 42228 46561 0.99883 + . ID=CGI_10008223; scaffold42948 TRF Tandem_Repeat 46642 46677 63 + . . scaffold42948 GLEAN promoter 47502 48501 0.999826 + . ID=CGI_10008224; scaffold42948 GLEAN mRNA 48502 51327 0.999826 + . ID=CGI_10008224; scaffold42948 TRF Tandem_Repeat 59704 59800 97 + . . scaffold42948 GLEAN mRNA 62568 68303 0.703571 - . ID=CGI_10008225; scaffold42948 GLEAN promoter 67178 68177 0.6496 + . ID=CGI_10008226; scaffold42948 GLEAN promoter 67929 68928 1 + . ID=CGI_10008227; scaffold42948 GLEAN mRNA 68178 68381 0.6496 + . ID=CGI_10008226; scaffold42948 GLEAN promoter 68304 69303 0.703571 - . ID=CGI_10008225; scaffold42948 GLEAN mRNA 68929 69093 1 + . ID=CGI_10008227; scaffold42948 TRF Tandem_Repeat 69402 69427 52 + . . scaffold42948 TRF Tandem_Repeat 69599 69655 114 + . . scaffold42948 TRF Tandem_Repeat 71848 71941 179 + . . scaffold42948 TRF Tandem_Repeat 73914 73952 78 + . . scaffold42948 GLEAN mRNA 74557 76128 0.994634 - . ID=CGI_10008228; scaffold42948 GLEAN promoter 76129 77128 0.994634 - . ID=CGI_10008228; scaffold42948 TRF Tandem_Repeat 78684 78717 59 + . . scaffold42948 TRF Tandem_Repeat 81477 81536 120 + . . scaffold42948 TRF Tandem_Repeat 83731 83803 137 + . . scaffold42948 TRF Tandem_Repeat 83805 83830 52 + . . scaffold42948 TRF Tandem_Repeat 101348 101389 84 + . . scaffold42948 TRF Tandem_Repeat 102649 102713 112 + . . scaffold42948 TRF Tandem_Repeat 103217 103242 52 + . . scaffold42948 TRF Tandem_Repeat 104174 104238 130 + . . scaffold42948 TRF Tandem_Repeat 104736 104774 69 + . . scaffold42948 TRF Tandem_Repeat 106001 106047 94 + . . scaffold42948 TRF Tandem_Repeat 107429 107476 96 + . . scaffold42948 TRF Tandem_Repeat 108874 108913 64 + . . scaffold42948 TRF Tandem_Repeat 109043 109078 72 + . . scaffold42948 TRF Tandem_Repeat 112397 112428 55 + . . scaffold42948 GLEAN mRNA 113272 119259 0.594435 - . ID=CGI_10008229; scaffold42948 GLEAN promoter 119260 120259 0.594435 - . ID=CGI_10008229; scaffold42948 TRF Tandem_Repeat 123286 123347 124 + . . scaffold42948 GLEAN mRNA 123850 125601 0.988978 - . ID=CGI_10008230; scaffold42948 GLEAN promoter 125602 126601 0.988978 - . ID=CGI_10008230; scaffold42948 TRF Tandem_Repeat 127104 127149 92 + . . scaffold42948 WUBlastX DNA_Crypton 127614 128264 133 + . . scaffold42948 WUBlastX DNA_Crypton 128567 129091 68 + . . scaffold42948 WUBlastX DNA_Crypton 128576 128926 95 + . . scaffold42948 TRF Tandem_Repeat 138115 138188 121 + . . scaffold42948 TRF Tandem_Repeat 139581 139730 212 + . . scaffold42948 TRF Tandem_Repeat 139585 139992 329 + . . scaffold42948 TRF Tandem_Repeat 139606 139995 315 + . . scaffold42948 TRF Tandem_Repeat 139606 139734 231 + . . scaffold42948 TRF Tandem_Repeat 139756 140084 203 + . . scaffold42948 TRF Tandem_Repeat 140849 141186 554 + . . scaffold42948 TRF Tandem_Repeat 142357 142457 139 + . . scaffold42948 TRF Tandem_Repeat 143199 143234 54 + . . scaffold42948 TRF Tandem_Repeat 143736 143818 87 + . . scaffold42948 GLEAN promoter 144385 145384 0.999994 + . ID=CGI_10008231; scaffold42948 GLEAN mRNA 145385 145930 0.999994 + . ID=CGI_10008231; scaffold42948 WUBlastX LTR_Gypsy 151805 153955 1862 - . . scaffold42948 WUBlastX LTR_Gypsy 153958 155649 1288 - . . scaffold42948 WUBlastX LTR_Gypsy 155739 156656 92 - . . scaffold42948 WUBlastX LTR_Gypsy 155940 156737 395 - . . scaffold42948 GLEAN promoter 156013 157012 0.833651 + . ID=CGI_10008233; scaffold42948 WUBlastX LTR_Gypsy 156165 156863 51 - . . scaffold42948 GLEAN mRNA 157013 158907 0.833651 + . ID=CGI_10008233; scaffold42948 GLEAN mRNA 161841 167034 0.992975 - . ID=CGI_10008234; scaffold42948 GLEAN promoter 167035 168034 0.992975 - . ID=CGI_10008234; scaffold42948 TRF Tandem_Repeat 169955 169985 62 + . . scaffold42948 GLEAN promoter 170311 171310 0.999923 + . ID=CGI_10008235; scaffold42948 GLEAN mRNA 171311 174756 0.999923 + . ID=CGI_10008235; scaffold42948 TRF Tandem_Repeat 173266 173363 196 + . . scaffold42948 TRF Tandem_Repeat 177411 177491 146 + . . scaffold42948 WUBlastX DNA_TcMar-Marin 182362 182412 35 - . . scaffold42948 WUBlastX DNA_TcMar-Marin 182428 182649 48 - . . scaffold42948 GLEAN promoter 185071 186070 0.150089 + . ID=CGI_10008236; scaffold42948 GLEAN mRNA 186071 196987 0.150089 + . ID=CGI_10008236; scaffold42948 WUBlastX DNA_TcMar-Marin 195377 195592 51 + . . scaffold42948 WUBlastX DNA_TcMar-Marin 195557 195640 48 + . . scaffold42948 WUBlastX DNA_TcMar-Marin 195581 195661 27 + . . scaffold42948 TRF Tandem_Repeat 199238 199285 51 + . . scaffold42948 TRF Tandem_Repeat 204606 204653 69 + . . scaffold42960 GLEAN promoter 7006 8005 0.155724 + . ID=CGI_10008237; scaffold42960 GLEAN mRNA 8006 19977 0.155724 + . ID=CGI_10008237; scaffold42960 GLEAN promoter 23322 24321 0.989909 + . ID=CGI_10008238; scaffold42960 GLEAN mRNA 24322 46250 0.989909 + . ID=CGI_10008238; scaffold42960 GLEAN mRNA 47618 55634 0.989491 - . ID=CGI_10008239; scaffold42960 TRF Tandem_Repeat 54749 54831 125 + . . scaffold42960 GLEAN promoter 55635 56634 0.989491 - . ID=CGI_10008239; scaffold42960 TRF Tandem_Repeat 56665 56798 141 + . . scaffold42960 GLEAN promoter 58882 59881 0.99959 + . ID=CGI_10008240; scaffold42960 GLEAN mRNA 59882 66818 0.99959 + . ID=CGI_10008240; scaffold42960 TRF Tandem_Repeat 65662 65809 156 + . . scaffold42960 TRF Tandem_Repeat 66880 66921 66 + . . scaffold42960 WUBlastX LTR_Ngaro 92338 92493 89 - . . scaffold42960 WUBlastX LTR_Ngaro 92371 92502 102 - . . scaffold42960 WUBlastX LTR_Ngaro 92517 92762 77 - . . scaffold42960 GLEAN promoter 100048 101047 0.0415676 + . ID=CGI_10008241; scaffold42960 GLEAN mRNA 101048 138604 0.0415676 + . ID=CGI_10008241; scaffold42960 TRF Tandem_Repeat 142394 142436 86 + . . scaffold42960 GLEAN mRNA 144970 148562 1 - . ID=CGI_10008242; scaffold42960 TRF Tandem_Repeat 148047 148075 58 + . . scaffold42960 GLEAN promoter 148563 149562 1 - . ID=CGI_10008242; scaffold42960 GLEAN mRNA 149181 156599 0.651111 - . ID=CGI_10008243; scaffold42960 GLEAN promoter 149516 150515 0.451172 + . ID=CGI_10008244; scaffold42960 GLEAN mRNA 150516 158020 0.451172 + . ID=CGI_10008244; scaffold42960 TRF Tandem_Repeat 155430 155496 134 + . . scaffold42960 GLEAN promoter 156600 157599 0.651111 - . ID=CGI_10008243; scaffold42960 GLEAN mRNA 167033 183690 1 - . ID=CGI_10008245; scaffold42960 TRF Tandem_Repeat 171547 171624 138 + . . scaffold42960 TRF Tandem_Repeat 178464 178500 74 + . . scaffold42960 GLEAN promoter 183691 184690 1 - . ID=CGI_10008245; scaffold42960 WUBlastX LTR_Gypsy 202857 203273 103 + . . scaffold42960 WUBlastX LTR_Gypsy-Cigr 202929 203273 153 + . . scaffold42974 GLEAN mRNA 123 21154 0.997746 - . ID=CGI_10008330; scaffold42974 GLEAN promoter 21155 22154 0.997746 - . ID=CGI_10008330; scaffold42974 GLEAN mRNA 27549 37568 0.555644 - . ID=CGI_10008331; scaffold42974 GLEAN promoter 37352 38351 1 + . ID=CGI_10008332; scaffold42974 GLEAN promoter 37569 38568 0.555644 - . ID=CGI_10008331; scaffold42974 GLEAN mRNA 38352 43183 1 + . ID=CGI_10008332; scaffold42974 GLEAN mRNA 44847 47517 1 - . ID=CGI_10008333; scaffold42974 GLEAN promoter 47518 48517 1 - . ID=CGI_10008333; scaffold42974 GLEAN promoter 78776 79775 1 + . ID=CGI_10008334; scaffold42974 GLEAN mRNA 79776 83503 1 + . ID=CGI_10008334; scaffold42974 GLEAN mRNA 98249 110582 0.99959 - . ID=CGI_10008335; scaffold42974 GLEAN promoter 110583 111582 0.99959 - . ID=CGI_10008335; scaffold42974 GLEAN mRNA 130006 134124 0.528374 - . ID=CGI_10008336; scaffold42974 GLEAN promoter 134125 135124 0.528374 - . ID=CGI_10008336; scaffold42974 GLEAN mRNA 134146 137834 1 - . ID=CGI_10008337; scaffold42974 GLEAN promoter 137835 138834 1 - . ID=CGI_10008337; scaffold42974 GLEAN mRNA 165895 186204 0.999675 - . ID=CGI_10008338; scaffold42974 GLEAN promoter 186205 187204 0.999675 - . ID=CGI_10008338; scaffold42974 GLEAN promoter 186229 187228 1 + . ID=CGI_10008339; scaffold42974 GLEAN mRNA 187229 190417 1 + . ID=CGI_10008339; scaffold42974 GLEAN mRNA 193450 198485 0.999675 - . ID=CGI_10008340; scaffold42974 GLEAN promoter 198486 199485 0.999675 - . ID=CGI_10008340; scaffold42974 GLEAN promoter 199159 200158 1 + . ID=CGI_10008341; scaffold42974 GLEAN mRNA 200159 204521 1 + . ID=CGI_10008341; scaffold42990 GLEAN mRNA 1940 6417 1 - . ID=CGI_10008370; scaffold42990 GLEAN promoter 5529 6528 1 + . ID=CGI_10008371; scaffold42990 GLEAN promoter 6418 7417 1 - . ID=CGI_10008370; scaffold42990 GLEAN mRNA 6529 9624 1 + . ID=CGI_10008371; scaffold42990 TRF Tandem_Repeat 10201 10233 57 + . . scaffold42990 GLEAN promoter 12634 13633 1 + . ID=CGI_10008372; scaffold42990 GLEAN mRNA 13634 21463 1 + . ID=CGI_10008372; scaffold42990 GLEAN mRNA 28661 34557 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 30031 30337 375 + . . scaffold42990 TRF Tandem_Repeat 30031 30202 263 + . . scaffold42990 TRF Tandem_Repeat 30080 30777 619 + . . scaffold42990 TRF Tandem_Repeat 30207 30337 165 + . . scaffold42990 TRF Tandem_Repeat 30412 31028 677 + . . scaffold42990 TRF Tandem_Repeat 30413 31022 690 + . . scaffold42990 TRF Tandem_Repeat 30413 30810 521 + . . scaffold42990 TRF Tandem_Repeat 30887 31028 241 + . . scaffold42990 TRF Tandem_Repeat 31517 31582 118 + . . scaffold42990 GLEAN promoter 34558 35557 0.648545 - . ID=CGI_10008373; scaffold42990 TRF Tandem_Repeat 44274 44763 583 + . . scaffold42990 TRF Tandem_Repeat 44274 44763 546 + . . scaffold42990 GLEAN mRNA 47036 54091 0.999997 - . ID=CGI_10008374; scaffold42990 TRF Tandem_Repeat 49702 49739 76 + . . scaffold42990 GLEAN promoter 53387 54386 0.52864 + . ID=CGI_10008375; scaffold42990 GLEAN promoter 54092 55091 0.999997 - . ID=CGI_10008374; scaffold42990 GLEAN mRNA 54387 71827 0.52864 + . ID=CGI_10008375; scaffold42990 TRF Tandem_Repeat 66738 66792 56 + . . scaffold42990 TRF Tandem_Repeat 69319 69385 116 + . . scaffold42990 GLEAN promoter 71080 72079 0.276547 + . ID=CGI_10008376; scaffold42990 GLEAN mRNA 72080 92253 0.276547 + . ID=CGI_10008376; scaffold42990 TRF Tandem_Repeat 80919 81132 302 + . . scaffold42990 TRF Tandem_Repeat 81528 81562 63 + . . scaffold42990 TRF Tandem_Repeat 81618 81655 76 + . . scaffold42990 TRF Tandem_Repeat 83077 83618 688 + . . scaffold42990 TRF Tandem_Repeat 83077 83601 658 + . . scaffold42990 WUBlastX LINE_RTE-X 86268 86651 111 + . . scaffold42990 WUBlastX LINE_RTE-X 86277 86528 157 + . . scaffold42990 WUBlastX LINE_CR1-L2 94829 95026 69 + . . scaffold42990 WUBlastX LINE_L2 94961 95095 30 + . . scaffold42990 GLEAN mRNA 98193 98678 0.999984 - . ID=CGI_10008377; scaffold42990 GLEAN promoter 98679 99678 0.999984 - . ID=CGI_10008377; scaffold42990 TRF Tandem_Repeat 101289 101378 78 + . . scaffold42990 TRF Tandem_Repeat 103672 103713 59 + . . scaffold42990 GLEAN mRNA 109909 112596 0.681651 - . ID=CGI_10008378; scaffold42990 GLEAN promoter 112597 113596 0.681651 - . ID=CGI_10008378; scaffold42990 GLEAN promoter 113301 114300 1 + . ID=CGI_10008379; scaffold42990 GLEAN mRNA 114301 116675 1 + . ID=CGI_10008379; scaffold42990 GLEAN promoter 118233 119232 0.648545 + . ID=CGI_10008380; scaffold42990 GLEAN mRNA 119233 120632 0.648545 + . ID=CGI_10008380; scaffold42990 GLEAN mRNA 121654 147222 0.530543 - . ID=CGI_10008381; scaffold42990 TRF Tandem_Repeat 123139 123178 71 + . . scaffold42990 TRF Tandem_Repeat 126553 126617 130 + . . scaffold42990 TRF Tandem_Repeat 126730 126792 126 + . . scaffold42990 TRF Tandem_Repeat 135634 135687 108 + . . scaffold42990 TRF Tandem_Repeat 136547 136593 94 + . . scaffold42990 TRF Tandem_Repeat 136702 136753 77 + . . scaffold42990 TRF Tandem_Repeat 141106 141169 56 + . . scaffold42990 TRF Tandem_Repeat 141130 141169 62 + . . scaffold42990 TRF Tandem_Repeat 141785 141818 68 + . . scaffold42990 TRF Tandem_Repeat 142265 142295 62 + . . scaffold42990 GLEAN promoter 147223 148222 0.530543 - . ID=CGI_10008381; scaffold42990 GLEAN promoter 148673 149672 0.999524 + . ID=CGI_10008382; scaffold42990 GLEAN mRNA 149673 156099 0.999524 + . ID=CGI_10008382; scaffold42990 TRF Tandem_Repeat 151033 151296 303 + . . scaffold42990 TRF Tandem_Repeat 151037 151298 371 + . . scaffold42990 TRF Tandem_Repeat 152602 152989 749 + . . scaffold42990 TRF Tandem_Repeat 152604 152989 583 + . . scaffold42990 GLEAN promoter 155203 156202 0.999525 + . ID=CGI_10008383; scaffold42990 GLEAN mRNA 156203 156487 0.999525 + . ID=CGI_10008383; scaffold42990 TRF Tandem_Repeat 165253 166373 1623 + . . scaffold42990 TRF Tandem_Repeat 166397 166450 63 + . . scaffold42990 TRF Tandem_Repeat 166400 166462 90 + . . scaffold42990 TRF Tandem_Repeat 166404 166463 66 + . . scaffold42990 WUBlastX LINE_CR1-L2 166992 167219 61 + . . scaffold42990 WUBlastX LINE_L2 167010 167318 47 + . . scaffold42990 WUBlastX LINE_CR1-L2 167031 167141 67 + . . scaffold42990 GLEAN mRNA 172015 174746 0.711042 - . ID=CGI_10008384; scaffold42990 GLEAN promoter 174747 175746 0.711042 - . ID=CGI_10008384; scaffold42990 GLEAN mRNA 180550 184642 1 - . ID=CGI_10008385; scaffold42990 GLEAN promoter 184047 185046 0.999676 + . ID=CGI_10008386; scaffold42990 GLEAN promoter 184643 185642 1 - . ID=CGI_10008385; scaffold42990 GLEAN mRNA 185047 195604 0.999676 + . ID=CGI_10008386; scaffold42990 TRF Tandem_Repeat 187350 187417 104 + . . scaffold42990 WUBlastX LINE_RTE-X 188578 188760 20 - . . scaffold42990 WUBlastX LINE_RTE-X 188641 188769 45 - . . scaffold42990 WUBlastX LINE_RTE-X 188762 188941 56 - . . scaffold42990 TRF Tandem_Repeat 191328 191886 765 + . . scaffold42990 TRF Tandem_Repeat 191619 191986 258 + . . scaffold42990 TRF Tandem_Repeat 192409 192779 600 + . . scaffold42990 GLEAN mRNA 200662 207073 1 - . ID=CGI_10008387; scaffold42990 TRF Tandem_Repeat 201486 201522 74 + . . scaffold42990 TRF Tandem_Repeat 205124 205175 104 + . . scaffold42990 GLEAN promoter 207074 208073 1 - . ID=CGI_10008387; scaffold42994 TRF Tandem_Repeat 1403 1454 95 + . . scaffold42994 GLEAN mRNA 1522 2709 0.999662 - . ID=CGI_10008311; scaffold42994 GLEAN promoter 2710 3709 0.999662 - . ID=CGI_10008311; scaffold42994 GLEAN promoter 4441 5440 0.836758 + . ID=CGI_10008312; scaffold42994 WUBlastX LINE_RTE-BovB 4966 5226 71 + . . scaffold42994 WUBlastX LINE_RTE-BovB 5249 5566 44 + . . scaffold42994 WUBlastX LINE_RTE-BovB 5336 5569 64 + . . scaffold42994 WUBlastX LINE_RTE-BovB 5405 5572 69 + . . scaffold42994 GLEAN mRNA 5441 10039 0.836758 + . ID=CGI_10008312; scaffold42994 TRF Tandem_Repeat 11230 11279 84 + . . scaffold42994 GLEAN mRNA 14958 17528 0.858885 - . ID=CGI_10008313; scaffold42994 GLEAN promoter 17529 18528 0.858885 - . ID=CGI_10008313; scaffold42994 GLEAN promoter 19013 20012 0.999999 + . ID=CGI_10008314; scaffold42994 GLEAN mRNA 20013 30282 0.999999 + . ID=CGI_10008314; scaffold42994 WUBlastX DNA_hAT 20435 21175 157 + . . scaffold42994 TRF Tandem_Repeat 30981 31095 81 + . . scaffold42994 TRF Tandem_Repeat 31114 31333 178 + . . scaffold42994 TRF Tandem_Repeat 31748 32121 362 + . . scaffold42994 TRF Tandem_Repeat 34262 34304 59 + . . scaffold42994 GLEAN mRNA 45161 62955 1 - . ID=CGI_10008315; scaffold42994 TRF Tandem_Repeat 46803 46828 52 + . . scaffold42994 GLEAN promoter 62956 63955 1 - . ID=CGI_10008315; scaffold42994 GLEAN mRNA 67331 70160 0.648556 - . ID=CGI_10008316; scaffold42994 TRF Tandem_Repeat 69570 69619 91 + . . scaffold42994 GLEAN promoter 70161 71160 0.648556 - . ID=CGI_10008316; scaffold42994 GLEAN mRNA 83377 84217 1 - . ID=CGI_10008317; scaffold42994 GLEAN promoter 84218 85217 1 - . ID=CGI_10008317; scaffold42994 GLEAN mRNA 85881 87893 1 - . ID=CGI_10008318; scaffold42994 TRF Tandem_Repeat 86764 86942 225 + . . scaffold42994 GLEAN promoter 87894 88893 1 - . ID=CGI_10008318; scaffold42994 TRF Tandem_Repeat 90173 91376 700 + . . scaffold42994 GLEAN promoter 94297 95296 1 + . ID=CGI_10008319; scaffold42994 GLEAN mRNA 95297 104889 1 + . ID=CGI_10008319; scaffold42994 TRF Tandem_Repeat 95870 96369 334 + . . scaffold42994 TRF Tandem_Repeat 101597 101665 75 + . . scaffold42994 TRF Tandem_Repeat 101597 101665 75 + . . scaffold42994 TRF Tandem_Repeat 101597 101665 75 + . . scaffold42994 GLEAN promoter 105957 106956 1 + . ID=CGI_10008320; scaffold42994 GLEAN mRNA 106957 110482 1 + . ID=CGI_10008320; scaffold42994 GLEAN promoter 111250 112249 1 + . ID=CGI_10008321; scaffold42994 GLEAN mRNA 112250 115080 1 + . ID=CGI_10008321; scaffold42994 TRF Tandem_Repeat 112871 112926 53 + . . scaffold42994 GLEAN promoter 115305 116304 0.991247 + . ID=CGI_10008322; scaffold42994 GLEAN mRNA 116305 119104 0.991247 + . ID=CGI_10008322; scaffold42994 GLEAN promoter 119904 120903 1 + . ID=CGI_10008323; scaffold42994 GLEAN mRNA 120904 125811 1 + . ID=CGI_10008323; scaffold42994 GLEAN promoter 125781 126780 1 + . ID=CGI_10008324; scaffold42994 GLEAN mRNA 126781 128590 1 + . ID=CGI_10008324; scaffold42994 GLEAN promoter 128359 129358 0.99134 + . ID=CGI_10008325; scaffold42994 GLEAN mRNA 129359 136389 0.99134 + . ID=CGI_10008325; scaffold42994 GLEAN mRNA 139195 145455 0.98804 - . ID=CGI_10008326; scaffold42994 GLEAN promoter 141257 142256 0.991365 + . ID=CGI_10008327; scaffold42994 GLEAN mRNA 142257 155752 0.991365 + . ID=CGI_10008327; scaffold42994 GLEAN promoter 145456 146455 0.98804 - . ID=CGI_10008326; scaffold42994 GLEAN promoter 157932 158931 0.989424 + . ID=CGI_10008328; scaffold42994 GLEAN mRNA 158932 166222 0.989424 + . ID=CGI_10008328; scaffold42994 TRF Tandem_Repeat 173322 173375 74 + . . scaffold42994 GLEAN promoter 182029 183028 0.595118 + . ID=CGI_10008329; scaffold42994 WUBlastX LTR_Gypsy 182072 182350 114 + . . scaffold42994 WUBlastX LTR_Gypsy 182078 182314 133 + . . scaffold42994 WUBlastX LTR_Gypsy 182344 182511 71 + . . scaffold42994 WUBlastX LTR_Gypsy 182344 182619 28 + . . scaffold42994 WUBlastX LTR_Gypsy 182837 182986 20 + . . scaffold42994 GLEAN mRNA 183029 183535 0.595118 + . ID=CGI_10008329; scaffold42994 WUBlastX LTR_Gypsy 185624 186628 47 + . . scaffold42994 WUBlastX LTR_Gypsy 185792 186547 175 + . . scaffold42994 WUBlastX LTR_Gypsy 185990 186667 79 + . . scaffold42994 WUBlastX LTR_Gypsy 186712 187344 47 + . . scaffold42994 WUBlastX LTR_Gypsy 186859 187707 122 + . . scaffold42994 WUBlastX LTR_Gypsy 187129 189321 1249 + . . scaffold42994 WUBlastX LTR_Gypsy-Cigr 187969 190602 1578 + . . scaffold43 WUBlastX DNA_IS4EU 513 722 69 + . . scaffold43 WUBlastX DNA_IS4EU 1672 2625 579 + . . scaffold43 WUBlastX DNA_IS4EU 2755 3594 349 - . . scaffold43 WUBlastX DNA_IS4EU 2836 4008 112 - . . scaffold43 WUBlastX DNA_IS4EU 3769 4080 96 - . . scaffold43 WUBlastX DNA_IS4EU 4098 4262 35 - . . scaffold43 TRF Tandem_Repeat 5579 5628 100 + . . scaffold43 TRF Tandem_Repeat 24875 25022 197 + . . scaffold43 TRF Tandem_Repeat 28431 28494 128 + . . scaffold43 TRF Tandem_Repeat 44639 44697 118 + . . scaffold43 GLEAN promoter 53794 54793 0.62185 + . ID=CGI_10021340; scaffold43 GLEAN mRNA 54794 75308 0.62185 + . ID=CGI_10021340; scaffold43 TRF Tandem_Repeat 66053 66105 106 + . . scaffold43 WUBlastX LTR_Pao 75848 76672 426 - . . scaffold43 WUBlastX LTR_Pao 76633 77085 363 - . . scaffold43 WUBlastX LTR_Pao 76633 77382 292 - . . scaffold43 WUBlastX LTR_Pao 77069 77617 96 - . . scaffold43 WUBlastX LTR_Pao 77619 78050 199 - . . scaffold43 WUBlastX LTR_Pao 78055 78789 102 - . . scaffold43 WUBlastX LTR_Pao 78173 78487 143 - . . scaffold43 WUBlastX LTR_Pao 78487 78774 150 - . . scaffold43 WUBlastX LTR_Pao 78487 79485 68 - . . scaffold43 WUBlastX LTR_Pao 78756 79025 140 - . . scaffold43 WUBlastX LTR_Pao 79151 79399 124 - . . scaffold43 WUBlastX LTR_Pao 79464 79610 25 - . . scaffold43 WUBlastX LTR_Pao 81009 81623 70 - . . scaffold43 WUBlastX LTR_Pao 81009 81503 77 - . . scaffold43 WUBlastX LTR_Pao 81573 81713 38 - . . scaffold43 WUBlastX LTR_Pao 82451 82645 80 - . . scaffold43 TRF Tandem_Repeat 83538 83571 50 + . . scaffold43 WUBlastX LTR_Gypsy 88184 88279 25 - . . scaffold43 WUBlastX LTR_Gypsy 88226 89734 1028 - . . scaffold43 WUBlastX LTR_Gypsy 89740 89874 22 - . . scaffold43 WUBlastX LTR_Gypsy 89770 90561 209 - . . scaffold43 WUBlastX LTR_Gypsy 89911 92190 1699 - . . scaffold43 WUBlastX LTR_Gypsy 92008 92265 33 - . . scaffold43 WUBlastX LTR_Copia 92244 92399 21 - . . scaffold43 WUBlastX LTR_Gypsy 92316 93119 178 - . . scaffold43 WUBlastX LTR_Gypsy 92331 93002 280 - . . scaffold43 WUBlastX LINE_Penelope 108113 108412 125 - . . scaffold43 WUBlastX LINE_Penelope 108125 108508 37 - . . scaffold43 TRF Tandem_Repeat 110153 110198 60 + . . scaffold43 WUBlastX DNA_Crypton 115284 116258 207 + . . scaffold43 WUBlastX DNA_En-Spm 120966 122987 748 + . . scaffold43 WUBlastX DNA_En-Spm 121590 122954 866 + . . scaffold43 WUBlastX LINE_Penelope 124349 124570 44 + . . scaffold43 WUBlastX LINE_Penelope 124522 124848 79 + . . scaffold43 WUBlastX LINE_Penelope 124576 124821 117 + . . scaffold43 TRF Tandem_Repeat 125317 125354 60 + . . scaffold43 WUBlastX DNA_Harbinger 128868 129575 369 + . . scaffold43 WUBlastX DNA_Harbinger 130754 130849 47 + . . scaffold43 GLEAN mRNA 131330 133165 0.799995 - . ID=CGI_10021341; scaffold43 TRF Tandem_Repeat 131635 131670 54 + . . scaffold43 GLEAN promoter 133166 134165 0.799995 - . ID=CGI_10021341; scaffold43 GLEAN mRNA 134440 134838 1 - . ID=CGI_10021342; scaffold43 WUBlastX DNA_Harbinger 134557 134868 106 - . . scaffold43 GLEAN promoter 134839 135838 1 - . ID=CGI_10021342; scaffold43 WUBlastX DNA_TcMar-Tc1 142842 142961 51 - . . scaffold43 TRF Tandem_Repeat 144089 144367 447 + . . scaffold43 TRF Tandem_Repeat 144606 144661 112 + . . scaffold43 WUBlastX DNA_TcMar-Tc1 144897 145142 77 - . . scaffold43 TRF Tandem_Repeat 148729 148755 54 + . . scaffold43 WUBlastX LTR_Pao 149421 149606 162 - . . scaffold43 WUBlastX LTR_Pao 149600 149965 270 - . . scaffold43 TRF Tandem_Repeat 150149 150210 115 + . . scaffold43 TRF Tandem_Repeat 151057 151438 620 + . . scaffold43 GLEAN promoter 158934 159933 0.999795 + . ID=CGI_10021343; scaffold43 GLEAN mRNA 159934 167296 0.999795 + . ID=CGI_10021343; scaffold43 GLEAN mRNA 171863 191585 0.726083 - . ID=CGI_10021344; scaffold43 TRF Tandem_Repeat 183285 183589 305 + . . scaffold43 TRF Tandem_Repeat 186432 187054 738 + . . scaffold43 TRF Tandem_Repeat 186432 187047 846 + . . scaffold43 TRF Tandem_Repeat 188727 189265 711 + . . scaffold43 GLEAN promoter 191586 192585 0.726083 - . ID=CGI_10021344; scaffold43 TRF Tandem_Repeat 195281 195464 282 + . . scaffold43 GLEAN promoter 199777 200776 0.999997 + . ID=CGI_10021345; scaffold43 GLEAN mRNA 200777 201356 0.999997 + . ID=CGI_10021345; scaffold43 TRF Tandem_Repeat 203111 203169 55 + . . scaffold43 WUBlastX DNA_IS4EU 204843 205385 151 - . . scaffold43 WUBlastX DNA_IS4EU 204843 205583 100 - . . scaffold43 WUBlastX DNA_IS4EU 204843 205727 32 - . . scaffold43 TRF Tandem_Repeat 208241 208274 68 + . . scaffold43 TRF Tandem_Repeat 208366 208407 84 + . . scaffold43 TRF Tandem_Repeat 211701 211744 88 + . . scaffold43 TRF Tandem_Repeat 213123 213173 102 + . . scaffold43 GLEAN mRNA 216225 216671 0.575455 - . ID=CGI_10021346; scaffold43 GLEAN promoter 216672 217671 0.575455 - . ID=CGI_10021346; scaffold43 GLEAN promoter 220045 221044 0.511765 + . ID=CGI_10021347; scaffold43 GLEAN mRNA 221045 231771 0.511765 + . ID=CGI_10021347; scaffold43 TRF Tandem_Repeat 221275 221327 106 + . . scaffold43 GLEAN mRNA 232511 247348 0.394228 - . ID=CGI_10021348; scaffold43 TRF Tandem_Repeat 243454 243515 81 + . . scaffold43 GLEAN promoter 247349 248348 0.394228 - . ID=CGI_10021348; scaffold43 GLEAN promoter 260117 261116 0.670567 + . ID=CGI_10021350; scaffold43 GLEAN mRNA 261117 276287 0.670567 + . ID=CGI_10021350; scaffold43 TRF Tandem_Repeat 261989 262027 53 + . . scaffold43 TRF Tandem_Repeat 265389 265415 54 + . . scaffold43 TRF Tandem_Repeat 265467 265513 87 + . . scaffold43 TRF Tandem_Repeat 266621 266690 122 + . . scaffold43 GLEAN mRNA 278791 283595 0.458788 - . ID=CGI_10021351; scaffold43 GLEAN promoter 283596 284595 0.458788 - . ID=CGI_10021351; scaffold43 TRF Tandem_Repeat 289119 289244 139 + . . scaffold43 TRF Tandem_Repeat 296025 296081 69 + . . scaffold43 GLEAN mRNA 299486 304709 1 - . ID=CGI_10021352; scaffold43 GLEAN promoter 304710 305709 1 - . ID=CGI_10021352; scaffold43 TRF Tandem_Repeat 304752 304792 55 + . . scaffold43 TRF Tandem_Repeat 320405 320446 50 + . . scaffold43 TRF Tandem_Repeat 327238 327266 51 + . . scaffold43 WUBlastX LINE_L1 327381 329765 225 + . . scaffold43 WUBlastX LINE_L1-Tx1 327390 328637 689 + . . scaffold43 WUBlastX LINE_L1-Tx1 329001 329732 483 + . . scaffold43 TRF Tandem_Repeat 332837 332934 126 + . . scaffold43 GLEAN mRNA 346691 357679 0.140322 - . ID=CGI_10021353; scaffold43 TRF Tandem_Repeat 352691 352720 51 + . . scaffold43 TRF Tandem_Repeat 353048 353103 85 + . . scaffold43 TRF Tandem_Repeat 353431 353504 130 + . . scaffold43 TRF Tandem_Repeat 356652 356691 71 + . . scaffold43 GLEAN promoter 357680 358679 0.140322 - . ID=CGI_10021353; scaffold43 TRF Tandem_Repeat 357766 357851 100 + . . scaffold43 TRF Tandem_Repeat 358764 358849 97 + . . scaffold43 WUBlastX LINE_L2 365564 365998 71 + . . scaffold43 WUBlastX LINE_L2 365654 366382 54 + . . scaffold43 WUBlastX LINE_L2 365657 366271 439 + . . scaffold43 TRF Tandem_Repeat 366502 366527 52 + . . scaffold43 GLEAN mRNA 367668 379056 0.378374 - . ID=CGI_10021354; scaffold43 TRF Tandem_Repeat 372991 373090 191 + . . scaffold43 TRF Tandem_Repeat 374393 374492 191 + . . scaffold43 TRF Tandem_Repeat 377165 377209 65 + . . scaffold43 WUBlastX LTR_Gypsy 378907 379185 32 + . . scaffold43 GLEAN promoter 379057 380056 0.378374 - . ID=CGI_10021354; scaffold43 GLEAN mRNA 380222 414471 0.256408 - . ID=CGI_10021355; scaffold43 TRF Tandem_Repeat 386997 387087 137 + . . scaffold43 TRF Tandem_Repeat 387053 387142 99 + . . scaffold43 TRF Tandem_Repeat 388595 388701 133 + . . scaffold43 TRF Tandem_Repeat 390151 390364 105 + . . scaffold43 TRF Tandem_Repeat 390173 390405 217 + . . scaffold43 TRF Tandem_Repeat 390173 390405 202 + . . scaffold43 WUBlastX LINE_RTE-X 393741 394193 173 - . . scaffold43 WUBlastX LINE_RTE-X 393756 394301 173 - . . scaffold43 TRF Tandem_Repeat 396033 396072 80 + . . scaffold43 TRF Tandem_Repeat 399760 399948 78 + . . scaffold43 TRF Tandem_Repeat 405883 405922 71 + . . scaffold43 TRF Tandem_Repeat 408804 409633 781 + . . scaffold43 WUBlastX DNA_TcMar-Tc1 412639 413640 439 + . . scaffold43 GLEAN promoter 414472 415471 0.256408 - . ID=CGI_10021355; scaffold43 WUBlastX LINE_L2 416990 417778 70 + . . scaffold43 WUBlastX LINE_L1 417161 417811 98 + . . scaffold43 WUBlastX LINE_L1-Tx1 419141 422953 1940 + . . scaffold43 WUBlastX LTR_Gypsy 424929 425312 78 - . . scaffold43 WUBlastX LTR_Gypsy 425088 425405 76 - . . scaffold43 WUBlastX LTR_Gypsy 425500 425565 22 - . . scaffold43 WUBlastX LTR_Gypsy 426258 426338 30 - . . scaffold43 WUBlastX LTR_Gypsy 426553 426882 197 - . . scaffold43 WUBlastX LTR_Gypsy 426905 427102 81 - . . scaffold43 WUBlastX LTR_Gypsy 426905 427051 90 - . . scaffold43 WUBlastX LINE_L1-Tx1 428924 429721 52 - . . scaffold43 WUBlastX LINE_L1-Tx1 428984 429508 65 - . . scaffold43 TRF Tandem_Repeat 429961 430010 75 + . . scaffold43 WUBlastX LINE_L1-Tx1 430143 430226 43 - . . scaffold43 WUBlastX LINE_L1-Tx1 430163 430885 318 - . . scaffold43 WUBlastX LINE_L1-Tx1 430890 432341 249 - . . scaffold43 WUBlastX LINE_L1-Tx1 432363 432539 84 - . . scaffold43 WUBlastX LINE_L1-Tx1 432508 432594 49 - . . scaffold43 WUBlastX LINE_L2 432955 433545 94 - . . scaffold43 WUBlastX LINE_L2 433018 433716 45 - . . scaffold43 WUBlastX LINE_L1-Tx1 434221 434580 48 - . . scaffold43 WUBlastX LINE_L1-Tx1 435017 435346 100 - . . scaffold43 WUBlastX LINE_L1-Tx1 435125 435781 84 - . . scaffold43 WUBlastX LINE_L1 444857 446416 213 + . . scaffold43 WUBlastX LINE_RTE-X 445157 446854 425 + . . scaffold43 WUBlastX LINE_L2 445499 447097 112 + . . scaffold43 WUBlastX LINE_CR1-L2 447264 447326 22 + . . scaffold43 TRF Tandem_Repeat 457749 457830 164 + . . scaffold43 TRF Tandem_Repeat 458383 458461 158 + . . scaffold43 TRF Tandem_Repeat 466566 466612 94 + . . scaffold43 WUBlastX LINE_L1-Tx1 466865 467641 26 - . . scaffold43 WUBlastX LINE_L1-Tx1 466970 467248 53 - . . scaffold43 TRF Tandem_Repeat 472166 472229 119 + . . scaffold43 GLEAN promoter 472233 473232 0.876156 + . ID=CGI_10021356; scaffold43 GLEAN mRNA 473233 480323 0.876156 + . ID=CGI_10021356; scaffold43 WUBlastX LTR_Gypsy 481224 482177 47 + . . scaffold43 WUBlastX LTR_Gypsy-Cigr 481407 482153 182 + . . scaffold43 WUBlastX LTR_Gypsy 481650 482924 188 + . . scaffold43 WUBlastX LTR_Gypsy 482250 485660 1662 + . . scaffold43 WUBlastX LTR_Gypsy 482979 485762 1952 + . . scaffold43 WUBlastX LTR_Gypsy 484701 485957 263 + . . scaffold43 WUBlastX LTR_ERV1 486575 486652 26 + . . scaffold43 WUBlastX LTR_Pao 487944 488369 32 + . . scaffold43 WUBlastX LTR_Gypsy 488043 488648 60 + . . scaffold43 WUBlastX LTR_Gypsy-Cigr 488130 488621 186 + . . scaffold43 WUBlastX LTR_Copia 488693 488917 63 + . . scaffold43 WUBlastX LTR_Gypsy 488777 489646 181 + . . scaffold43 WUBlastX LTR_Gypsy 488972 492382 1662 + . . scaffold43 WUBlastX LTR_Gypsy 489701 492484 1952 + . . scaffold43 WUBlastX LTR_Gypsy 491423 492679 263 + . . scaffold43 WUBlastX LTR_ERV1 493297 493374 26 + . . scaffold43 GLEAN mRNA 507335 510133 0.545728 - . ID=CGI_10021357; scaffold43 GLEAN promoter 510134 511133 0.545728 - . ID=CGI_10021357; scaffold43 TRF Tandem_Repeat 521163 522929 1783 + . . scaffold43 TRF Tandem_Repeat 521163 522929 2243 + . . scaffold43 GLEAN mRNA 538185 539879 1 - . ID=CGI_10021358; scaffold43 WUBlastX LINE_L2 539334 539567 21 - . . scaffold43 GLEAN promoter 539880 540879 1 - . ID=CGI_10021358; scaffold43 GLEAN promoter 542959 543958 0.309072 + . ID=CGI_10021359; scaffold43 GLEAN mRNA 543959 547896 0.309072 + . ID=CGI_10021359; scaffold43 TRF Tandem_Repeat 547638 547715 81 + . . scaffold43 GLEAN mRNA 548768 555312 0.167699 - . ID=CGI_10021360; scaffold43 TRF Tandem_Repeat 551554 551669 196 + . . scaffold43 TRF Tandem_Repeat 552184 552299 196 + . . scaffold43 TRF Tandem_Repeat 553825 553884 120 + . . scaffold43 GLEAN promoter 555313 556312 0.167699 - . ID=CGI_10021360; scaffold43 GLEAN mRNA 558255 582492 0.807709 - . ID=CGI_10021361; scaffold43 TRF Tandem_Repeat 570172 570201 60 + . . scaffold43 TRF Tandem_Repeat 572988 573041 108 + . . scaffold43 WUBlastX LINE_L1 574468 574809 74 + . . scaffold43 WUBlastX LINE_RTE-X 574549 574812 85 + . . scaffold43 WUBlastX LINE_RTE-X 574597 574812 128 + . . scaffold43 TRF Tandem_Repeat 577641 577677 65 + . . scaffold43 GLEAN promoter 582493 583492 0.807709 - . ID=CGI_10021361; scaffold43 TRF Tandem_Repeat 583417 583468 104 + . . scaffold43 GLEAN mRNA 583617 591250 1 - . ID=CGI_10021362; scaffold43 GLEAN promoter 585326 586325 0.999573 + . ID=CGI_10021363; scaffold43 GLEAN mRNA 586326 593879 0.999573 + . ID=CGI_10021363; scaffold43 GLEAN promoter 591251 592250 1 - . ID=CGI_10021362; scaffold43 GLEAN mRNA 596864 626438 0.998828 - . ID=CGI_10021364; scaffold43 TRF Tandem_Repeat 607631 607833 298 + . . scaffold43 GLEAN promoter 626439 627438 0.998828 - . ID=CGI_10021364; scaffold43 TRF Tandem_Repeat 627619 627668 100 + . . scaffold43 TRF Tandem_Repeat 638148 638174 54 + . . scaffold43 TRF Tandem_Repeat 639392 639462 142 + . . scaffold43 GLEAN mRNA 640144 655007 0.987447 - . ID=CGI_10021365; scaffold43 TRF Tandem_Repeat 649549 649596 96 + . . scaffold43 TRF Tandem_Repeat 652890 652978 79 + . . scaffold43 TRF Tandem_Repeat 652891 652978 95 + . . scaffold43 GLEAN promoter 655008 656007 0.987447 - . ID=CGI_10021365; scaffold43 TRF Tandem_Repeat 661641 661746 160 + . . scaffold43 GLEAN promoter 668440 669439 0.999846 + . ID=CGI_10021366; scaffold43 TRF Tandem_Repeat 668621 668654 68 + . . scaffold43 GLEAN mRNA 669440 673830 0.999846 + . ID=CGI_10021366; scaffold43 GLEAN mRNA 675179 677005 1 - . ID=CGI_10021367; scaffold43 GLEAN promoter 677006 678005 1 - . ID=CGI_10021367; scaffold43008 WUBlastX LINE_RTE-X 455 688 48 + . . scaffold43008 WUBlastX LINE_RTE-X 715 939 90 + . . scaffold43008 WUBlastX LINE_RTE-X 1041 1610 89 + . . scaffold43008 WUBlastX LINE_RTE-X 1041 1730 57 + . . scaffold43008 GLEAN promoter 1147 2146 0.982229 + . ID=CGI_10008457; scaffold43008 GLEAN mRNA 2147 17942 0.982229 + . ID=CGI_10008457; scaffold43008 WUBlastX LINE_RTE-X 2462 2701 28 + . . scaffold43008 WUBlastX LINE_L2 2579 2701 30 + . . scaffold43008 WUBlastX LINE_L1 2603 2764 42 + . . scaffold43008 WUBlastX LINE_L2 2736 2888 44 + . . scaffold43008 WUBlastX LINE_RTE-X 2760 2891 78 + . . scaffold43008 WUBlastX LINE_RTE-X 2896 3642 148 + . . scaffold43008 WUBlastX LINE_RTE-X 2896 3327 197 + . . scaffold43008 WUBlastX LINE_RTE-X 3315 4439 55 + . . scaffold43008 WUBlastX LINE_RTE-X 3650 3841 59 + . . scaffold43008 WUBlastX LINE_RTE-X 4122 4418 84 + . . scaffold43008 WUBlastX LINE_RTE-X 4122 4487 68 + . . scaffold43008 WUBlastX LINE_RTE-X 4122 4568 48 + . . scaffold43008 TRF Tandem_Repeat 4664 4703 53 + . . scaffold43008 TRF Tandem_Repeat 4665 4707 59 + . . scaffold43008 TRF Tandem_Repeat 4734 5529 1084 + . . scaffold43008 WUBlastX DNA_Harbinger 10969 11262 86 + . . scaffold43008 WUBlastX DNA_Harbinger 11610 12017 183 - . . scaffold43008 TRF Tandem_Repeat 14755 14810 105 + . . scaffold43008 GLEAN mRNA 18841 33811 0.999674 - . ID=CGI_10008458; scaffold43008 WUBlastX LINE_Jockey 20891 21109 52 - . . scaffold43008 WUBlastX LTR_Gypsy 29007 33062 2124 - . . scaffold43008 WUBlastX LTR_Gypsy 32769 33134 72 - . . scaffold43008 TRF Tandem_Repeat 33294 33351 73 + . . scaffold43008 WUBlastX LTR_Gypsy 33463 33588 22 - . . scaffold43008 WUBlastX DNA_Kolobok-Hyd 33794 34570 53 - . . scaffold43008 GLEAN promoter 33812 34811 0.999674 - . ID=CGI_10008458; scaffold43008 GLEAN mRNA 34951 43182 0.651134 - . ID=CGI_10008459; scaffold43008 GLEAN promoter 43183 44182 0.651134 - . ID=CGI_10008459; scaffold43008 WUBlastX LTR_Gypsy 44476 44751 100 + . . scaffold43008 WUBlastX LTR_Gypsy 44491 44823 71 + . . scaffold43008 TRF Tandem_Repeat 46224 46266 70 + . . scaffold43008 TRF Tandem_Repeat 46226 46279 56 + . . scaffold43008 WUBlastX LINE_RTE-X 49096 49572 53 - . . scaffold43008 WUBlastX LINE_RTE-X 49261 49521 71 - . . scaffold43008 GLEAN mRNA 50609 51714 0.543138 - . ID=CGI_10008460; scaffold43008 WUBlastX DNA_Sola 50828 51052 52 - . . scaffold43008 WUBlastX DNA_Sola 51598 51723 39 - . . scaffold43008 GLEAN promoter 51715 52714 0.543138 - . ID=CGI_10008460; scaffold43008 GLEAN promoter 52966 53965 0.597586 + . ID=CGI_10008461; scaffold43008 GLEAN mRNA 53966 64440 0.597586 + . ID=CGI_10008461; scaffold43008 WUBlastX DNA_Kolobok 54820 55011 86 + . . scaffold43008 WUBlastX DNA_Kolobok 54859 55020 89 + . . scaffold43008 WUBlastX DNA_Kolobok 55418 55597 63 - . . scaffold43008 WUBlastX DNA_Kolobok 55669 55911 61 - . . scaffold43008 WUBlastX DNA_Kolobok 56103 56174 37 - . . scaffold43008 WUBlastX DNA_Kolobok 56168 56299 25 - . . scaffold43008 WUBlastX DNA_Kolobok 56195 56305 72 - . . scaffold43008 WUBlastX DNA_Kolobok 56498 57094 136 - . . scaffold43008 WUBlastX DNA_Kolobok 56501 56917 150 - . . scaffold43008 TRF Tandem_Repeat 64960 65000 82 + . . scaffold43008 WUBlastX DNA_P 67128 67418 104 - . . scaffold43008 TRF Tandem_Repeat 73697 74392 791 + . . scaffold43008 TRF Tandem_Repeat 76834 76861 56 + . . scaffold43008 GLEAN mRNA 78684 87806 0.543465 - . ID=CGI_10008462; scaffold43008 WUBlastX LINE_L1-Tx1 84205 84414 22 - . . scaffold43008 WUBlastX LINE_L1-Tx1 84238 84402 24 - . . scaffold43008 WUBlastX LINE_L1-Tx1 84262 84363 27 - . . scaffold43008 WUBlastX LINE_L1 84265 84522 24 - . . scaffold43008 WUBlastX LINE_L1-Tx1 84603 84791 54 - . . scaffold43008 WUBlastX LINE_L1 84633 84791 67 - . . scaffold43008 WUBlastX LINE_L1-Tx1 84721 85107 67 - . . scaffold43008 WUBlastX LINE_L1 85037 85351 138 - . . scaffold43008 WUBlastX LINE_L1-Tx1 85100 85351 176 - . . scaffold43008 WUBlastX LINE_L1-Tx1 85380 86333 193 - . . scaffold43008 WUBlastX LINE_L1-Tx1 85383 86114 249 - . . scaffold43008 WUBlastX LINE_L1-Tx1 86135 86500 99 - . . scaffold43008 WUBlastX LINE_L1-Tx1 86135 86671 77 - . . scaffold43008 GLEAN promoter 87807 88806 0.543465 - . ID=CGI_10008462; scaffold43008 TRF Tandem_Repeat 88430 89287 923 + . . scaffold43008 WUBlastX DNA_En-Spm 91829 92503 99 - . . scaffold43008 WUBlastX DNA_En-Spm 91943 92515 198 - . . scaffold43008 WUBlastX DNA_En-Spm 92605 92820 41 - . . scaffold43008 WUBlastX DNA_En-Spm 92882 93139 104 - . . scaffold43008 WUBlastX DNA_En-Spm 93455 93682 29 - . . scaffold43008 GLEAN mRNA 99536 103413 0.960501 - . ID=CGI_10008463; scaffold43008 GLEAN promoter 103414 104413 0.960501 - . ID=CGI_10008463; scaffold43008 TRF Tandem_Repeat 141348 141467 109 + . . scaffold43008 TRF Tandem_Repeat 142479 142612 119 + . . scaffold43008 WUBlastX DNA_Kolobok 144447 144635 24 + . . scaffold43008 GLEAN mRNA 165439 171174 0.990448 - . ID=CGI_10008464; scaffold43008 TRF Tandem_Repeat 166788 166837 82 + . . scaffold43008 GLEAN promoter 171175 172174 0.990448 - . ID=CGI_10008464; scaffold43008 GLEAN mRNA 171365 171673 0.999372 - . ID=CGI_10008465; scaffold43008 GLEAN promoter 171674 172673 0.999372 - . ID=CGI_10008465; scaffold43008 GLEAN mRNA 171903 172883 0.99957 - . ID=CGI_10008466; scaffold43008 GLEAN promoter 172884 173883 0.99957 - . ID=CGI_10008466; scaffold43008 TRF Tandem_Repeat 194338 194375 76 + . . scaffold43008 TRF Tandem_Repeat 209106 209142 56 + . . scaffold43012 GLEAN mRNA 28566 47395 0.999676 - . ID=CGI_10008451; scaffold43012 GLEAN promoter 47396 48395 0.999676 - . ID=CGI_10008451; scaffold43012 GLEAN promoter 85166 86165 0.999087 + . ID=CGI_10008452; scaffold43012 GLEAN promoter 85857 86856 0.414263 + . ID=CGI_10008453; scaffold43012 GLEAN mRNA 86166 86843 0.999087 + . ID=CGI_10008452; scaffold43012 GLEAN mRNA 86857 95620 0.414263 + . ID=CGI_10008453; scaffold43012 GLEAN promoter 100894 101893 0.518334 + . ID=CGI_10008454; scaffold43012 GLEAN mRNA 101894 139553 0.518334 + . ID=CGI_10008454; scaffold43012 GLEAN promoter 171416 172415 0.997106 + . ID=CGI_10008455; scaffold43012 GLEAN mRNA 172416 198398 0.997106 + . ID=CGI_10008455; scaffold43012 GLEAN promoter 197658 198657 0.791674 + . ID=CGI_10008456; scaffold43012 GLEAN mRNA 198658 210025 0.791674 + . ID=CGI_10008456; scaffold43024 WUBlastX LINE_L1-Tx1 3 428 30 + . . scaffold43024 WUBlastX LINE_L1-Tx1 3 272 64 + . . scaffold43024 WUBlastX DNA_hAT-Tip100 781 1173 51 + . . scaffold43024 WUBlastX DNA_hAT-Tip100 850 1173 70 + . . scaffold43024 WUBlastX DNA_hAT-Tip100 880 1137 71 + . . scaffold43024 WUBlastX LTR_Ngaro 1750 1860 54 + . . scaffold43024 WUBlastX LTR_Ngaro 1850 2455 276 + . . scaffold43024 WUBlastX LTR_Ngaro 2476 2676 96 + . . scaffold43024 WUBlastX LTR_Ngaro 2667 2810 56 + . . scaffold43024 WUBlastX LINE_L1-Tx1 26067 26243 25 - . . scaffold43024 TRF Tandem_Repeat 26490 26558 129 + . . scaffold43024 WUBlastX LINE_RTE-X 29855 30316 87 - . . scaffold43024 WUBlastX LINE_RTE-X 29966 30292 96 - . . scaffold43024 WUBlastX LINE_RTE-X 29999 30349 94 - . . scaffold43024 WUBlastX LINE_RTE-X 30358 30744 21 - . . scaffold43024 WUBlastX LINE_RTE-X 30364 30669 114 - . . scaffold43024 WUBlastX LINE_Penelope 38422 38895 109 + . . scaffold43024 WUBlastX LINE_Penelope 38440 39042 42 + . . scaffold43024 TRF Tandem_Repeat 39092 39280 188 + . . scaffold43024 GLEAN mRNA 56662 58000 0.996489 - . ID=CGI_10008551; scaffold43024 GLEAN promoter 58001 59000 0.996489 - . ID=CGI_10008551; scaffold43024 WUBlastX DNA_Merlin 58850 59722 406 + . . scaffold43024 WUBlastX DNA_Merlin 60144 61016 405 - . . scaffold43024 TRF Tandem_Repeat 64261 64295 52 + . . scaffold43024 GLEAN mRNA 65437 67485 1 - . ID=CGI_10008552; scaffold43024 GLEAN promoter 67486 68485 1 - . ID=CGI_10008552; scaffold43024 GLEAN mRNA 67786 71356 0.544852 - . ID=CGI_10008553; scaffold43024 GLEAN promoter 71357 72356 0.544852 - . ID=CGI_10008553; scaffold43024 TRF Tandem_Repeat 74171 74235 130 + . . scaffold43024 GLEAN promoter 75437 76436 0.836238 + . ID=CGI_10008554; scaffold43024 GLEAN mRNA 76437 76841 0.836238 + . ID=CGI_10008554; scaffold43024 GLEAN mRNA 78708 85404 1 - . ID=CGI_10008555; scaffold43024 GLEAN promoter 85405 86404 1 - . ID=CGI_10008555; scaffold43024 GLEAN promoter 88640 89639 0.558395 + . ID=CGI_10008556; scaffold43024 GLEAN mRNA 89640 96950 0.558395 + . ID=CGI_10008556; scaffold43024 TRF Tandem_Repeat 92771 93677 1485 + . . scaffold43024 GLEAN promoter 98040 99039 0.47027 + . ID=CGI_10008557; scaffold43024 GLEAN mRNA 99040 134638 0.47027 + . ID=CGI_10008557; scaffold43024 TRF Tandem_Repeat 132840 133245 374 + . . scaffold43024 TRF Tandem_Repeat 133028 133337 250 + . . scaffold43024 TRF Tandem_Repeat 133668 133717 100 + . . scaffold43024 TRF Tandem_Repeat 134460 134507 96 + . . scaffold43024 GLEAN mRNA 138368 143884 1 - . ID=CGI_10008558; scaffold43024 GLEAN promoter 143773 144772 0.999999 + . ID=CGI_10008559; scaffold43024 GLEAN promoter 143885 144884 1 - . ID=CGI_10008558; scaffold43024 GLEAN mRNA 144773 145831 0.999999 + . ID=CGI_10008559; scaffold43024 TRF Tandem_Repeat 160242 160304 117 + . . scaffold43024 GLEAN promoter 164215 165214 1 + . ID=CGI_10008560; scaffold43024 GLEAN mRNA 165215 167839 1 + . ID=CGI_10008560; scaffold43024 TRF Tandem_Repeat 167881 167925 81 + . . scaffold43024 TRF Tandem_Repeat 167936 168206 386 + . . scaffold43024 TRF Tandem_Repeat 177578 177626 98 + . . scaffold43024 TRF Tandem_Repeat 179123 179156 50 + . . scaffold43024 GLEAN promoter 180409 181408 0.754583 + . ID=CGI_10008561; scaffold43024 GLEAN mRNA 181409 187341 0.754583 + . ID=CGI_10008561; scaffold43024 TRF Tandem_Repeat 184383 184458 152 + . . scaffold43024 GLEAN mRNA 187792 202815 0.999218 - . ID=CGI_10008562; scaffold43024 TRF Tandem_Repeat 190183 190232 100 + . . scaffold43024 GLEAN promoter 202816 203815 0.999218 - . ID=CGI_10008562; scaffold43024 TRF Tandem_Repeat 206613 206652 80 + . . scaffold43026 GLEAN promoter 58 1057 0.782871 + . ID=CGI_10008549; scaffold43026 GLEAN mRNA 1058 11155 0.782871 + . ID=CGI_10008549; scaffold43026 WUBlastX DNA_TcMar-Tc1 20930 21061 25 - . . scaffold43026 WUBlastX DNA_TcMar-Tc1 21058 21168 32 - . . scaffold43026 WUBlastX DNA_IS4EU 63452 64354 284 + . . scaffold43026 WUBlastX DNA_Kolobok-IS4 63602 64339 371 + . . scaffold43026 WUBlastX LTR_Ngaro 90735 90977 139 - . . scaffold43026 WUBlastX LTR_Ngaro 90982 91305 178 - . . scaffold43026 WUBlastX LTR_Ngaro 91333 92034 195 - . . scaffold43026 TRF Tandem_Repeat 98391 98455 130 + . . scaffold43026 TRF Tandem_Repeat 110196 110227 64 + . . scaffold43026 TRF Tandem_Repeat 124588 124635 96 + . . scaffold43026 WUBlastX LINE_L1-Tx1 128333 129271 60 - . . scaffold43026 WUBlastX LINE_L1-Tx1 128495 129313 215 - . . scaffold43026 WUBlastX LINE_L1 129283 129948 250 - . . scaffold43026 WUBlastX LINE_L1-Tx1 129421 129951 358 - . . scaffold43026 WUBlastX LINE_L1-Tx1 129951 130652 201 - . . scaffold43026 WUBlastX LINE_L1-Tx1 131353 131892 53 - . . scaffold43026 WUBlastX LINE_L1 131455 131832 105 - . . scaffold43026 WUBlastX LINE_L1-Tx1 131862 132206 151 - . . scaffold43026 WUBlastX LINE_L1 132169 132258 26 - . . scaffold43026 GLEAN promoter 134566 135565 0.699088 + . ID=CGI_10008550; scaffold43026 GLEAN mRNA 135566 144191 0.699088 + . ID=CGI_10008550; scaffold43026 WUBlastX LINE_RTE-BovB 143672 143926 58 - . . scaffold43026 WUBlastX LINE_RTE-BovB 143678 143830 94 - . . scaffold43026 WUBlastX DNA_Harbinger 148430 148561 45 + . . scaffold43026 WUBlastX DNA_Harbinger 149223 149390 70 + . . scaffold43026 TRF Tandem_Repeat 157541 157592 61 + . . scaffold43026 WUBlastX DNA_TcMar-ISRm1 164306 164524 91 - . . scaffold43026 WUBlastX DNA_TcMar-ISRm1 164318 164491 97 - . . scaffold43026 WUBlastX DNA_P 170000 170254 72 + . . scaffold43026 WUBlastX DNA_Kolobok-IS4 170000 170506 26 + . . scaffold43026 WUBlastX DNA_IS4EU 170856 171074 41 + . . scaffold43026 WUBlastX DNA_IS4EU 171020 171343 127 + . . scaffold43026 WUBlastX DNA_IS4EU 171355 171456 53 + . . scaffold43026 WUBlastX DNA_IS4EU 171435 171740 103 + . . scaffold43026 WUBlastX DNA_Kolobok-IS4 171453 171710 114 + . . scaffold43026 WUBlastX DNA_IS4EU 171456 171671 120 + . . scaffold43026 TRF Tandem_Repeat 172122 173078 1269 + . . scaffold43026 WUBlastX DNA_IS4EU 183444 183944 24 - . . scaffold43026 WUBlastX DNA_IS4EU 183462 183656 56 - . . scaffold43026 WUBlastX DNA_IS4EU 183751 183840 25 - . . scaffold43026 WUBlastX DNA_IS4EU 184422 184628 60 - . . scaffold43026 WUBlastX LINE_RTE-BovB 194428 194616 62 - . . scaffold43026 WUBlastX LINE_RTE-BovB 194530 194634 59 - . . scaffold43026 WUBlastX LINE_RTE-BovB 194720 194860 59 - . . scaffold43026 WUBlastX LINE_RTE-BovB 194720 194965 58 - . . scaffold43026 WUBlastX DNA_TcMar-Tc1 197211 197522 29 + . . scaffold43026 WUBlastX DNA_TcMar-Tc1 197274 197729 145 + . . scaffold43026 WUBlastX DNA_TcMar-Tc1 197726 198325 359 + . . scaffold43026 TRF Tandem_Repeat 210780 211070 220 + . . scaffold43026 TRF Tandem_Repeat 210831 211070 282 + . . scaffold43026 TRF Tandem_Repeat 210959 211070 75 + . . scaffold43028 GLEAN mRNA 1060 6285 0.811456 - . ID=CGI_10008500; scaffold43028 TRF Tandem_Repeat 3547 3599 106 + . . scaffold43028 GLEAN promoter 6286 7285 0.811456 - . ID=CGI_10008500; scaffold43028 GLEAN mRNA 10286 13909 0.554983 - . ID=CGI_10008501; scaffold43028 GLEAN promoter 12952 13951 0.998274 + . ID=CGI_10008502; scaffold43028 GLEAN promoter 13910 14909 0.554983 - . ID=CGI_10008501; scaffold43028 GLEAN mRNA 13952 19166 0.998274 + . ID=CGI_10008502; scaffold43028 WUBlastX LINE_RTE-BovB 17106 17261 37 - . . scaffold43028 GLEAN mRNA 23422 32905 0.577346 - . ID=CGI_10008503; scaffold43028 GLEAN promoter 32906 33905 0.577346 - . ID=CGI_10008503; scaffold43028 TRF Tandem_Repeat 34511 34591 162 + . . scaffold43028 TRF Tandem_Repeat 34606 34654 98 + . . scaffold43028 TRF Tandem_Repeat 55805 55847 63 + . . scaffold43028 GLEAN promoter 66355 67354 1 + . ID=CGI_10008504; scaffold43028 GLEAN mRNA 67355 71730 1 + . ID=CGI_10008504; scaffold43028 WUBlastX LINE_I 69706 70002 38 + . . scaffold43028 GLEAN mRNA 77947 93234 0.999415 - . ID=CGI_10008505; scaffold43028 GLEAN promoter 93235 94234 0.999415 - . ID=CGI_10008505; scaffold43028 GLEAN mRNA 97802 108557 0.420094 - . ID=CGI_10008506; scaffold43028 GLEAN promoter 108558 109557 0.420094 - . ID=CGI_10008506; scaffold43028 TRF Tandem_Repeat 109324 110067 668 + . . scaffold43028 GLEAN promoter 109407 110406 0.470116 + . ID=CGI_10008507; scaffold43028 GLEAN mRNA 110407 130139 0.470116 + . ID=CGI_10008507; scaffold43028 TRF Tandem_Repeat 112715 112768 108 + . . scaffold43028 TRF Tandem_Repeat 114515 115446 1291 + . . scaffold43028 GLEAN mRNA 117988 121445 0.998225 - . ID=CGI_10008508; scaffold43028 GLEAN promoter 121446 122445 0.998225 - . ID=CGI_10008508; scaffold43028 TRF Tandem_Repeat 126010 126081 137 + . . scaffold43028 TRF Tandem_Repeat 128424 129549 1252 + . . scaffold43028 GLEAN mRNA 134085 148503 0.998245 - . ID=CGI_10008509; scaffold43028 GLEAN promoter 148504 149503 0.998245 - . ID=CGI_10008509; scaffold43028 GLEAN mRNA 149263 161602 1 - . ID=CGI_10008510; scaffold43028 TRF Tandem_Repeat 149921 149973 106 + . . scaffold43028 GLEAN promoter 161603 162602 1 - . ID=CGI_10008510; scaffold43028 TRF Tandem_Repeat 162876 162906 53 + . . scaffold43028 TRF Tandem_Repeat 171068 172258 1239 + . . scaffold43028 TRF Tandem_Repeat 172502 172663 134 + . . scaffold43028 TRF Tandem_Repeat 172516 172676 250 + . . scaffold43028 GLEAN mRNA 173460 178783 0.99553 - . ID=CGI_10008511; scaffold43028 GLEAN promoter 177910 178909 0.836268 + . ID=CGI_10008512; scaffold43028 GLEAN promoter 178784 179783 0.99553 - . ID=CGI_10008511; scaffold43028 GLEAN mRNA 178910 186835 0.836268 + . ID=CGI_10008512; scaffold43028 TRF Tandem_Repeat 189290 189370 162 + . . scaffold43028 GLEAN mRNA 189809 191798 1 - . ID=CGI_10008513; scaffold43028 GLEAN promoter 191799 192798 1 - . ID=CGI_10008513; scaffold43028 GLEAN mRNA 194857 200941 1 - . ID=CGI_10008514; scaffold43028 GLEAN promoter 200942 201941 1 - . ID=CGI_10008514; scaffold43028 TRF Tandem_Repeat 201962 202102 158 + . . scaffold43028 TRF Tandem_Repeat 203356 203427 69 + . . scaffold43028 GLEAN promoter 208191 209190 0.999994 + . ID=CGI_10008515; scaffold43028 GLEAN mRNA 209191 209779 0.999994 + . ID=CGI_10008515; scaffold43034 GLEAN mRNA 6205 19654 0.999351 - . ID=CGI_10008467; scaffold43034 GLEAN promoter 19655 20654 0.999351 - . ID=CGI_10008467; scaffold43034 GLEAN promoter 26535 27534 0.99996 + . ID=CGI_10008468; scaffold43034 GLEAN mRNA 27535 57290 0.99996 + . ID=CGI_10008468; scaffold43034 GLEAN promoter 57647 58646 1 + . ID=CGI_10008469; scaffold43034 GLEAN mRNA 58647 67565 1 + . ID=CGI_10008469; scaffold43034 GLEAN mRNA 89546 96634 0.922964 - . ID=CGI_10008470; scaffold43034 GLEAN promoter 96635 97634 0.922964 - . ID=CGI_10008470; scaffold43034 GLEAN promoter 97922 98921 0.528499 + . ID=CGI_10008471; scaffold43034 GLEAN mRNA 98922 100588 0.528499 + . ID=CGI_10008471; scaffold43034 GLEAN mRNA 104894 109677 0.676448 - . ID=CGI_10008472; scaffold43034 GLEAN promoter 109678 110677 0.676448 - . ID=CGI_10008472; scaffold43034 GLEAN mRNA 110271 117853 0.905297 - . ID=CGI_10008473; scaffold43034 GLEAN promoter 117854 118853 0.905297 - . ID=CGI_10008473; scaffold43034 GLEAN mRNA 118054 125928 1 - . ID=CGI_10008474; scaffold43034 GLEAN promoter 125929 126928 1 - . ID=CGI_10008474; scaffold43034 GLEAN promoter 129423 130422 1 + . ID=CGI_10008475; scaffold43034 GLEAN mRNA 130423 130664 1 + . ID=CGI_10008475; scaffold43034 GLEAN promoter 133993 134992 1 + . ID=CGI_10008476; scaffold43034 GLEAN mRNA 134993 137145 1 + . ID=CGI_10008476; scaffold43034 GLEAN promoter 142522 143521 1 + . ID=CGI_10008477; scaffold43034 GLEAN mRNA 143522 148734 1 + . ID=CGI_10008477; scaffold43034 GLEAN mRNA 151878 155728 0.5 - . ID=CGI_10008478; scaffold43034 GLEAN promoter 155729 156728 0.5 - . ID=CGI_10008478; scaffold43034 GLEAN mRNA 161467 170878 0.999999 - . ID=CGI_10008479; scaffold43034 GLEAN promoter 170879 171878 0.999999 - . ID=CGI_10008479; scaffold43034 GLEAN promoter 179306 180305 0.999211 + . ID=CGI_10008480; scaffold43034 GLEAN mRNA 180306 181153 0.999211 + . ID=CGI_10008480; scaffold43034 GLEAN promoter 180808 181807 0.999608 + . ID=CGI_10008481; scaffold43034 GLEAN mRNA 181808 198215 0.999608 + . ID=CGI_10008481; scaffold43036 GLEAN mRNA 24277 27152 1 - . ID=CGI_10008493; scaffold43036 WUBlastX LTR_Pao 26859 26960 115 - . . scaffold43036 WUBlastX LTR_Pao 27045 27152 123 - . . scaffold43036 WUBlastX LTR_Pao 27048 27182 104 - . . scaffold43036 GLEAN promoter 27153 28152 1 - . ID=CGI_10008493; scaffold43036 GLEAN promoter 27706 28705 0.991856 + . ID=CGI_10008494; scaffold43036 GLEAN mRNA 28706 41484 0.991856 + . ID=CGI_10008494; scaffold43036 TRF Tandem_Repeat 63858 63884 54 + . . scaffold43036 TRF Tandem_Repeat 66760 66802 86 + . . scaffold43036 TRF Tandem_Repeat 67420 67475 103 + . . scaffold43036 GLEAN promoter 69613 70612 0.963004 + . ID=CGI_10008495; scaffold43036 GLEAN mRNA 70613 92040 0.963004 + . ID=CGI_10008495; scaffold43036 TRF Tandem_Repeat 78666 78724 118 + . . scaffold43036 TRF Tandem_Repeat 90060 90086 54 + . . scaffold43036 TRF Tandem_Repeat 95670 95694 50 + . . scaffold43036 GLEAN promoter 96200 97199 1 + . ID=CGI_10008496; scaffold43036 GLEAN mRNA 97200 112073 1 + . ID=CGI_10008496; scaffold43036 TRF Tandem_Repeat 97955 98022 136 + . . scaffold43036 TRF Tandem_Repeat 98059 98086 56 + . . scaffold43036 TRF Tandem_Repeat 105237 105307 52 + . . scaffold43036 GLEAN mRNA 115757 129303 1 - . ID=CGI_10008497; scaffold43036 TRF Tandem_Repeat 126200 126225 52 + . . scaffold43036 GLEAN promoter 129304 130303 1 - . ID=CGI_10008497; scaffold43036 TRF Tandem_Repeat 140955 141688 1188 + . . scaffold43036 GLEAN promoter 147188 148187 0.999804 + . ID=CGI_10008498; scaffold43036 GLEAN mRNA 148188 171820 0.999804 + . ID=CGI_10008498; scaffold43036 WUBlastX DNA_hAT-hAT5 149188 149373 38 + . . scaffold43036 WUBlastX DNA_hAT-Blackja 149711 149761 25 + . . scaffold43036 WUBlastX DNA_hAT-Blackja 150595 150807 106 + . . scaffold43036 WUBlastX DNA_hAT-Blackja 150806 151774 322 + . . scaffold43036 WUBlastX DNA_hAT-Blackja 151466 151843 69 + . . scaffold43036 WUBlastX DNA_hAT-Blackja 151848 152153 73 + . . scaffold43036 TRF Tandem_Repeat 159421 159462 50 + . . scaffold43036 TRF Tandem_Repeat 160749 161567 980 + . . scaffold43036 TRF Tandem_Repeat 167431 167512 155 + . . scaffold43036 WUBlastX LINE_CR1-L2 171647 171790 45 + . . scaffold43036 TRF Tandem_Repeat 189762 189797 63 + . . scaffold43036 TRF Tandem_Repeat 196667 196699 57 + . . scaffold43036 GLEAN promoter 197515 198514 1 + . ID=CGI_10008499; scaffold43036 GLEAN mRNA 198515 200816 1 + . ID=CGI_10008499; scaffold43036 TRF Tandem_Repeat 208754 208811 89 + . . scaffold43038 WUBlastX LINE_CR1 15 407 65 + . . scaffold43038 WUBlastX LINE_CR1 54 284 83 + . . scaffold43038 TRF Tandem_Repeat 864 1229 498 + . . scaffold43038 TRF Tandem_Repeat 872 1229 473 + . . scaffold43038 GLEAN promoter 1322 2321 1 + . ID=CGI_10008437; scaffold43038 GLEAN mRNA 2322 7039 1 + . ID=CGI_10008437; scaffold43038 GLEAN mRNA 7287 8222 1 - . ID=CGI_10008438; scaffold43038 GLEAN promoter 7702 8701 0.734735 + . ID=CGI_10008439; scaffold43038 GLEAN promoter 8223 9222 1 - . ID=CGI_10008438; scaffold43038 GLEAN mRNA 8702 25751 0.734735 + . ID=CGI_10008439; scaffold43038 TRF Tandem_Repeat 21907 21945 78 + . . scaffold43038 GLEAN promoter 30486 31485 0.654973 + . ID=CGI_10008440; scaffold43038 GLEAN mRNA 31486 48754 0.654973 + . ID=CGI_10008440; scaffold43038 TRF Tandem_Repeat 32407 32456 73 + . . scaffold43038 TRF Tandem_Repeat 39586 40966 1685 + . . scaffold43038 TRF Tandem_Repeat 39586 40992 1475 + . . scaffold43038 TRF Tandem_Repeat 48354 48397 88 + . . scaffold43038 TRF Tandem_Repeat 60979 61122 112 + . . scaffold43038 GLEAN promoter 71950 72949 0.999932 + . ID=CGI_10008441; scaffold43038 GLEAN mRNA 72950 78086 0.999932 + . ID=CGI_10008441; scaffold43038 GLEAN promoter 77860 78859 0.993917 + . ID=CGI_10008442; scaffold43038 GLEAN mRNA 78860 82696 0.993917 + . ID=CGI_10008442; scaffold43038 GLEAN mRNA 85348 101738 0.999351 - . ID=CGI_10008443; scaffold43038 TRF Tandem_Repeat 89278 89334 105 + . . scaffold43038 GLEAN promoter 94367 95366 0.999027 + . ID=CGI_10008444; scaffold43038 GLEAN mRNA 95367 105637 0.999027 + . ID=CGI_10008444; scaffold43038 TRF Tandem_Repeat 96721 96762 57 + . . scaffold43038 WUBlastX LINE_RTE-X 97316 98347 77 - . . scaffold43038 WUBlastX LINE_RTE-X 97661 98347 109 - . . scaffold43038 GLEAN promoter 101739 102738 0.999351 - . ID=CGI_10008443; scaffold43038 GLEAN mRNA 104163 108178 0.999999 - . ID=CGI_10008445; scaffold43038 GLEAN promoter 108179 109178 0.999999 - . ID=CGI_10008445; scaffold43038 GLEAN mRNA 110279 119271 0.64338 - . ID=CGI_10008446; scaffold43038 GLEAN promoter 119272 120271 0.64338 - . ID=CGI_10008446; scaffold43038 TRF Tandem_Repeat 119642 119692 102 + . . scaffold43038 GLEAN promoter 120050 121049 0.999283 + . ID=CGI_10008447; scaffold43038 TRF Tandem_Repeat 120631 120689 118 + . . scaffold43038 GLEAN mRNA 121050 147377 0.999283 + . ID=CGI_10008447; scaffold43038 TRF Tandem_Repeat 123837 123884 78 + . . scaffold43038 TRF Tandem_Repeat 131066 131691 813 + . . scaffold43038 GLEAN promoter 155381 156380 1 + . ID=CGI_10008448; scaffold43038 GLEAN mRNA 156381 173787 1 + . ID=CGI_10008448; scaffold43038 TRF Tandem_Repeat 165024 165255 177 + . . scaffold43038 TRF Tandem_Repeat 165033 165259 167 + . . scaffold43038 TRF Tandem_Repeat 165670 165697 56 + . . scaffold43038 TRF Tandem_Repeat 192796 194159 329 + . . scaffold43038 TRF Tandem_Repeat 192796 193433 242 + . . scaffold43038 TRF Tandem_Repeat 193754 194059 96 + . . scaffold43038 TRF Tandem_Repeat 194020 194137 78 + . . scaffold43038 TRF Tandem_Repeat 197535 197681 125 + . . scaffold43038 TRF Tandem_Repeat 197604 197704 91 + . . scaffold43038 TRF Tandem_Repeat 199559 199623 121 + . . scaffold43038 TRF Tandem_Repeat 202925 203717 883 + . . scaffold43038 GLEAN mRNA 206373 206630 0.999966 - . ID=CGI_10008449; scaffold43038 GLEAN promoter 206631 207630 0.999966 - . ID=CGI_10008449; scaffold43038 GLEAN mRNA 206962 207156 0.999995 - . ID=CGI_10008450; scaffold43038 GLEAN promoter 207157 208156 0.999995 - . ID=CGI_10008450; scaffold43038 WUBlastX LINE_L1-Tx1 207900 209123 185 - . . scaffold43054 WUBlastX RC_Helitron 57 509 45 + . . scaffold43054 TRF Tandem_Repeat 7383 7440 116 + . . scaffold43054 WUBlastX LINE_L2 11306 11635 37 - . . scaffold43054 WUBlastX LINE_L2 11363 11653 94 - . . scaffold43054 WUBlastX LINE_L2 11408 11716 59 - . . scaffold43054 WUBlastX LINE_L2 11408 11806 49 - . . scaffold43054 WUBlastX LINE_L2 11408 11653 99 - . . scaffold43054 GLEAN promoter 13351 14350 0.999415 + . ID=CGI_10008594; scaffold43054 GLEAN mRNA 14351 23053 0.999415 + . ID=CGI_10008594; scaffold43054 WUBlastX LINE_L2 24185 24556 75 + . . scaffold43054 WUBlastX LINE_L2 24556 24645 28 + . . scaffold43054 TRF Tandem_Repeat 27587 27994 771 + . . scaffold43054 TRF Tandem_Repeat 27587 27994 555 + . . scaffold43054 WUBlastX LINE_L1-Tx1 28740 28838 21 - . . scaffold43054 WUBlastX LINE_L1-Tx1 28943 29398 54 - . . scaffold43054 WUBlastX LINE_L1-Tx1 29021 29398 65 - . . scaffold43054 WUBlastX LINE_L1-Tx1 29129 29467 79 - . . scaffold43054 WUBlastX LINE_L1 29376 29831 68 - . . scaffold43054 WUBlastX LINE_L1 29577 29828 94 - . . scaffold43054 WUBlastX LINE_L1-Tx1 29616 29807 118 - . . scaffold43054 WUBlastX LINE_L1-Tx1 29622 29879 38 - . . scaffold43054 WUBlastX LINE_L2 30069 30446 26 - . . scaffold43054 GLEAN promoter 33687 34686 0.989033 + . ID=CGI_10008595; scaffold43054 GLEAN mRNA 34687 49952 0.989033 + . ID=CGI_10008595; scaffold43054 TRF Tandem_Repeat 48007 48060 69 + . . scaffold43054 GLEAN mRNA 62738 68031 0.67191 - . ID=CGI_10008596; scaffold43054 TRF Tandem_Repeat 64221 64290 140 + . . scaffold43054 TRF Tandem_Repeat 64598 64657 113 + . . scaffold43054 GLEAN promoter 68032 69031 0.67191 - . ID=CGI_10008596; scaffold43054 GLEAN promoter 68561 69560 0.990615 + . ID=CGI_10008597; scaffold43054 GLEAN mRNA 69561 76829 0.990615 + . ID=CGI_10008597; scaffold43054 WUBlastX LINE_RTE-X 70823 71251 40 - . . scaffold43054 WUBlastX LINE_RTE-X 70889 71248 65 - . . scaffold43054 WUBlastX LINE_RTE-X 70949 71257 89 - . . scaffold43054 GLEAN mRNA 73304 90807 0.67188 - . ID=CGI_10008598; scaffold43054 GLEAN promoter 90808 91807 0.67188 - . ID=CGI_10008598; scaffold43054 GLEAN mRNA 115627 127340 0.934576 - . ID=CGI_10008599; scaffold43054 TRF Tandem_Repeat 123218 123278 122 + . . scaffold43054 TRF Tandem_Repeat 125092 125189 105 + . . scaffold43054 TRF Tandem_Repeat 126709 127079 627 + . . scaffold43054 GLEAN promoter 127341 128340 0.934576 - . ID=CGI_10008599; scaffold43054 TRF Tandem_Repeat 130166 130200 70 + . . scaffold43054 TRF Tandem_Repeat 131229 131276 96 + . . scaffold43054 GLEAN promoter 135953 136952 0.944999 + . ID=CGI_10008600; scaffold43054 GLEAN mRNA 136953 140115 0.944999 + . ID=CGI_10008600; scaffold43054 WUBlastX LINE_RTE-X 144475 144690 68 + . . scaffold43054 WUBlastX LINE_RTE-X 144505 144663 75 + . . scaffold43054 WUBlastX LINE_L2 147061 147360 87 - . . scaffold43054 GLEAN promoter 153403 154402 0.998261 + . ID=CGI_10008601; scaffold43054 GLEAN promoter 153859 154858 0.889678 + . ID=CGI_10008602; scaffold43054 GLEAN mRNA 154403 154630 0.998261 + . ID=CGI_10008601; scaffold43054 GLEAN mRNA 154859 159866 0.889678 + . ID=CGI_10008602; scaffold43054 GLEAN mRNA 160130 161320 0.999999 - . ID=CGI_10008603; scaffold43054 GLEAN promoter 161321 162320 0.999999 - . ID=CGI_10008603; scaffold43054 GLEAN mRNA 162378 163188 1 - . ID=CGI_10008604; scaffold43054 GLEAN promoter 163189 164188 1 - . ID=CGI_10008604; scaffold43054 GLEAN mRNA 174314 181970 0.991132 - . ID=CGI_10008605; scaffold43054 GLEAN promoter 181971 182970 0.991132 - . ID=CGI_10008605; scaffold43054 TRF Tandem_Repeat 185576 185616 82 + . . scaffold43054 GLEAN mRNA 200018 208906 1 - . ID=CGI_10008606; scaffold43054 GLEAN promoter 204216 205215 0.665042 + . ID=CGI_10008607; scaffold43054 GLEAN mRNA 205216 206700 0.665042 + . ID=CGI_10008607; scaffold43054 GLEAN promoter 208907 209906 1 - . ID=CGI_10008606; scaffold43064 TRF Tandem_Repeat 5 1081 1534 + . . scaffold43064 GLEAN promoter 1241 2240 0.292417 + . ID=CGI_10008625; scaffold43064 TRF Tandem_Repeat 1647 1697 102 + . . scaffold43064 GLEAN mRNA 2241 22972 0.292417 + . ID=CGI_10008625; scaffold43064 TRF Tandem_Repeat 4069 4115 94 + . . scaffold43064 WUBlastX LINE_RTE-X 19461 20441 440 - . . scaffold43064 WUBlastX LINE_RTE-BovB 21274 21432 42 - . . scaffold43064 WUBlastX LINE_RTE-X 21277 21408 55 - . . scaffold43064 WUBlastX LINE_RTE-X 21283 21540 35 - . . scaffold43064 GLEAN mRNA 24090 33287 0.633506 - . ID=CGI_10008626; scaffold43064 TRF Tandem_Repeat 26247 26840 299 + . . scaffold43064 TRF Tandem_Repeat 26606 26840 163 + . . scaffold43064 TRF Tandem_Repeat 26771 26841 79 + . . scaffold43064 GLEAN promoter 33288 34287 0.633506 - . ID=CGI_10008626; scaffold43064 TRF Tandem_Repeat 33944 33979 72 + . . scaffold43064 WUBlastX DNA_Harbinger 49556 50407 440 + . . scaffold43064 WUBlastX DNA_Harbinger 49589 50557 338 + . . scaffold43064 GLEAN mRNA 50628 70232 0.808133 - . ID=CGI_10008627; scaffold43064 WUBlastX DNA_Harbinger 51393 51764 98 - . . scaffold43064 WUBlastX LTR_Gypsy 53078 53473 86 + . . scaffold43064 TRF Tandem_Repeat 54803 54856 108 + . . scaffold43064 GLEAN promoter 70233 71232 0.808133 - . ID=CGI_10008627; scaffold43064 TRF Tandem_Repeat 75282 75349 129 + . . scaffold43064 GLEAN mRNA 84249 103683 0.866356 - . ID=CGI_10008628; scaffold43064 TRF Tandem_Repeat 86459 86775 280 + . . scaffold43064 TRF Tandem_Repeat 98284 98336 106 + . . scaffold43064 GLEAN promoter 103684 104683 0.866356 - . ID=CGI_10008628; scaffold43064 TRF Tandem_Repeat 104779 104822 88 + . . scaffold43064 GLEAN mRNA 107179 108908 0.558395 - . ID=CGI_10008629; scaffold43064 GLEAN promoter 108909 109908 0.558395 - . ID=CGI_10008629; scaffold43064 TRF Tandem_Repeat 129296 130692 1958 + . . scaffold43064 GLEAN promoter 142030 143029 0.970901 + . ID=CGI_10008630; scaffold43064 GLEAN mRNA 143030 143777 0.970901 + . ID=CGI_10008630; scaffold43064 GLEAN mRNA 143882 151429 0.996279 - . ID=CGI_10008631; scaffold43064 TRF Tandem_Repeat 147722 147791 54 + . . scaffold43064 TRF Tandem_Repeat 147725 147804 65 + . . scaffold43064 GLEAN promoter 151430 152429 0.996279 - . ID=CGI_10008631; scaffold43064 GLEAN promoter 152860 153859 0.999992 + . ID=CGI_10008632; scaffold43064 GLEAN mRNA 153860 157191 0.999992 + . ID=CGI_10008632; scaffold43064 TRF Tandem_Repeat 154173 154210 76 + . . scaffold43064 TRF Tandem_Repeat 155413 155712 198 + . . scaffold43064 TRF Tandem_Repeat 155413 155712 221 + . . scaffold43064 TRF Tandem_Repeat 155444 155712 335 + . . scaffold43064 WUBlastX LINE_CR1 161600 161698 24 - . . scaffold43064 WUBlastX LINE_CR1 161626 162111 72 - . . scaffold43064 WUBlastX LINE_CR1 162046 162123 42 - . . scaffold43064 WUBlastX LINE_CR1 162126 162878 175 - . . scaffold43064 TRF Tandem_Repeat 163967 164702 865 + . . scaffold43064 GLEAN promoter 164128 165127 0.499838 + . ID=CGI_10008633; scaffold43064 GLEAN mRNA 165128 188165 0.499838 + . ID=CGI_10008633; scaffold43064 WUBlastX DNA_TcMar-Tc1 167509 167784 40 - . . scaffold43064 WUBlastX DNA_TcMar-Tc1 167524 167709 86 - . . scaffold43064 TRF Tandem_Repeat 167923 168012 85 + . . scaffold43064 TRF Tandem_Repeat 167925 168026 80 + . . scaffold43064 TRF Tandem_Repeat 169290 169431 92 + . . scaffold43064 TRF Tandem_Repeat 180640 180681 77 + . . scaffold43064 WUBlastX LINE_L1-Tx1 183814 184188 76 + . . scaffold43064 WUBlastX LINE_L1-Tx1 184473 184664 24 + . . scaffold43064 TRF Tandem_Repeat 192352 192459 55 + . . scaffold43064 TRF Tandem_Repeat 192544 192770 96 + . . scaffold43064 TRF Tandem_Repeat 192551 192690 97 + . . scaffold43064 TRF Tandem_Repeat 213383 213433 102 + . . scaffold43066 TRF Tandem_Repeat 1426 1472 58 + . . scaffold43066 TRF Tandem_Repeat 5114 5147 59 + . . scaffold43066 GLEAN mRNA 5151 8542 0.877303 - . ID=CGI_10008676; scaffold43066 TRF Tandem_Repeat 5403 5662 161 + . . scaffold43066 TRF Tandem_Repeat 5403 5546 100 + . . scaffold43066 TRF Tandem_Repeat 5559 5662 120 + . . scaffold43066 GLEAN promoter 8543 9542 0.877303 - . ID=CGI_10008676; scaffold43066 GLEAN mRNA 16356 22002 0.877456 - . ID=CGI_10008677; scaffold43066 TRF Tandem_Repeat 16422 16453 55 + . . scaffold43066 TRF Tandem_Repeat 19702 19745 56 + . . scaffold43066 TRF Tandem_Repeat 19921 19971 102 + . . scaffold43066 TRF Tandem_Repeat 21472 21517 92 + . . scaffold43066 GLEAN promoter 22003 23002 0.877456 - . ID=CGI_10008677; scaffold43066 GLEAN mRNA 22090 48701 0.862891 - . ID=CGI_10008678; scaffold43066 TRF Tandem_Repeat 26399 27087 804 + . . scaffold43066 GLEAN promoter 48702 49701 0.862891 - . ID=CGI_10008678; scaffold43066 TRF Tandem_Repeat 85098 85197 123 + . . scaffold43066 TRF Tandem_Repeat 85528 85595 84 + . . scaffold43066 TRF Tandem_Repeat 85528 85595 66 + . . scaffold43066 TRF Tandem_Repeat 85529 85583 67 + . . scaffold43066 WUBlastX LTR_Pao 86698 87189 398 - . . scaffold43066 WUBlastX LTR_Pao 87194 88336 974 - . . scaffold43066 WUBlastX LTR_Pao 88360 89670 868 - . . scaffold43066 WUBlastX LTR_Pao 88369 89925 313 - . . scaffold43066 WUBlastX LTR_Pao 89628 90119 286 - . . scaffold43066 WUBlastX LTR_Pao 90122 91747 1000 - . . scaffold43066 WUBlastX LTR_Pao 90122 92263 941 - . . scaffold43066 WUBlastX LTR_Pao 91817 92404 39 - . . scaffold43066 WUBlastX LTR_Ngaro 93548 94363 247 - . . scaffold43066 WUBlastX LTR_Ngaro 94425 95072 345 - . . scaffold43066 WUBlastX DNA_Harbinger 95378 95827 53 + . . scaffold43066 WUBlastX DNA_Harbinger 95393 95668 89 + . . scaffold43066 TRF Tandem_Repeat 95945 95994 100 + . . scaffold43066 TRF Tandem_Repeat 95994 96037 88 + . . scaffold43066 WUBlastX DNA_Harbinger 96844 97398 258 - . . scaffold43066 WUBlastX DNA_Harbinger 96958 97398 294 - . . scaffold43066 WUBlastX DNA_Harbinger 97400 97963 219 - . . scaffold43066 GLEAN mRNA 98754 111030 0.870281 - . ID=CGI_10008679; scaffold43066 TRF Tandem_Repeat 108423 108449 54 + . . scaffold43066 GLEAN promoter 111031 112030 0.870281 - . ID=CGI_10008679; scaffold43066 GLEAN mRNA 130422 133140 1 - . ID=CGI_10008680; scaffold43066 GLEAN promoter 133141 134140 1 - . ID=CGI_10008680; scaffold43066 TRF Tandem_Repeat 137048 137089 84 + . . scaffold43066 TRF Tandem_Repeat 140223 140253 53 + . . scaffold43066 TRF Tandem_Repeat 140468 141379 1261 + . . scaffold43066 TRF Tandem_Repeat 142649 145426 3831 + . . scaffold43066 GLEAN mRNA 147817 163171 1 - . ID=CGI_10008681; scaffold43066 TRF Tandem_Repeat 148200 148225 52 + . . scaffold43066 TRF Tandem_Repeat 148509 148535 54 + . . scaffold43066 TRF Tandem_Repeat 157208 157242 70 + . . scaffold43066 GLEAN promoter 163172 164171 1 - . ID=CGI_10008681; scaffold43066 TRF Tandem_Repeat 163460 163513 108 + . . scaffold43066 TRF Tandem_Repeat 168195 168222 56 + . . scaffold43066 TRF Tandem_Repeat 168279 168365 68 + . . scaffold43066 GLEAN promoter 168643 169642 0.999906 + . ID=CGI_10008682; scaffold43066 GLEAN mRNA 169643 171923 0.999906 + . ID=CGI_10008682; scaffold43066 TRF Tandem_Repeat 175641 175788 287 + . . scaffold43066 GLEAN promoter 182378 183377 0.514804 + . ID=CGI_10008683; scaffold43066 GLEAN mRNA 183378 188514 0.514804 + . ID=CGI_10008683; scaffold43066 TRF Tandem_Repeat 191513 191543 62 + . . scaffold43066 TRF Tandem_Repeat 191541 191639 198 + . . scaffold43066 GLEAN promoter 194490 195489 0.999669 + . ID=CGI_10008684; scaffold43066 GLEAN mRNA 195490 214567 0.999669 + . ID=CGI_10008684; scaffold43066 TRF Tandem_Repeat 203418 203753 559 + . . scaffold43066 TRF Tandem_Repeat 212757 213220 603 + . . scaffold43072 WUBlastX LINE_L2 124 1881 1103 - . . scaffold43072 TRF Tandem_Repeat 4991 5025 70 + . . scaffold43072 GLEAN mRNA 5779 17519 1 - . ID=CGI_10008695; scaffold43072 TRF Tandem_Repeat 7139 7199 50 + . . scaffold43072 TRF Tandem_Repeat 8503 8537 70 + . . scaffold43072 TRF Tandem_Repeat 14326 14530 311 + . . scaffold43072 GLEAN promoter 17211 18210 0.998978 + . ID=CGI_10008696; scaffold43072 GLEAN promoter 17520 18519 1 - . ID=CGI_10008695; scaffold43072 GLEAN mRNA 18211 19616 0.998978 + . ID=CGI_10008696; scaffold43072 GLEAN mRNA 22754 55456 0.695082 - . ID=CGI_10008697; scaffold43072 WUBlastX LTR_Gypsy 24474 24593 45 - . . scaffold43072 TRF Tandem_Repeat 25931 25991 63 + . . scaffold43072 TRF Tandem_Repeat 33347 33391 90 + . . scaffold43072 TRF Tandem_Repeat 45966 46005 80 + . . scaffold43072 TRF Tandem_Repeat 50307 50365 86 + . . scaffold43072 TRF Tandem_Repeat 50959 51013 110 + . . scaffold43072 GLEAN promoter 55457 56456 0.695082 - . ID=CGI_10008697; scaffold43072 TRF Tandem_Repeat 56976 57074 67 + . . scaffold43072 TRF Tandem_Repeat 57427 57526 91 + . . scaffold43072 TRF Tandem_Repeat 57679 57797 67 + . . scaffold43072 TRF Tandem_Repeat 58944 59103 72 + . . scaffold43072 TRF Tandem_Repeat 68398 68857 712 + . . scaffold43072 TRF Tandem_Repeat 69734 70024 465 + . . scaffold43072 TRF Tandem_Repeat 77720 77984 210 + . . scaffold43072 TRF Tandem_Repeat 77726 77838 96 + . . scaffold43072 GLEAN promoter 79207 80206 0.999598 + . ID=CGI_10008698; scaffold43072 GLEAN mRNA 80207 103534 0.999598 + . ID=CGI_10008698; scaffold43072 TRF Tandem_Repeat 100804 100980 183 + . . scaffold43072 TRF Tandem_Repeat 100813 100980 156 + . . scaffold43072 TRF Tandem_Repeat 101432 101960 476 + . . scaffold43072 TRF Tandem_Repeat 101432 101960 456 + . . scaffold43072 TRF Tandem_Repeat 104079 104130 59 + . . scaffold43072 TRF Tandem_Repeat 104299 105820 1824 + . . scaffold43072 TRF Tandem_Repeat 105996 107007 1023 + . . scaffold43072 GLEAN mRNA 111803 112042 0.984652 - . ID=CGI_10008699; scaffold43072 GLEAN promoter 112043 113042 0.984652 - . ID=CGI_10008699; scaffold43072 GLEAN mRNA 112346 129150 0.396359 - . ID=CGI_10008700; scaffold43072 WUBlastX LINE_RTE-X 112632 112985 22 - . . scaffold43072 WUBlastX LINE_RTE-X 112752 113069 82 - . . scaffold43072 TRF Tandem_Repeat 116004 116042 51 + . . scaffold43072 TRF Tandem_Repeat 121113 121199 66 + . . scaffold43072 TRF Tandem_Repeat 121306 121490 122 + . . scaffold43072 TRF Tandem_Repeat 121505 121652 143 + . . scaffold43072 TRF Tandem_Repeat 125158 125218 122 + . . scaffold43072 GLEAN promoter 129151 130150 0.396359 - . ID=CGI_10008700; scaffold43072 GLEAN mRNA 130517 131722 0.999337 - . ID=CGI_10008701; scaffold43072 GLEAN promoter 131723 132722 0.999337 - . ID=CGI_10008701; scaffold43072 GLEAN promoter 146612 147611 0.817919 + . ID=CGI_10008702; scaffold43072 GLEAN mRNA 147612 150023 0.817919 + . ID=CGI_10008702; scaffold43072 GLEAN mRNA 152864 167994 0.701716 - . ID=CGI_10008703; scaffold43072 TRF Tandem_Repeat 153331 153382 104 + . . scaffold43072 GLEAN promoter 167995 168994 0.701716 - . ID=CGI_10008703; scaffold43072 GLEAN mRNA 175017 183309 0.714416 - . ID=CGI_10008704; scaffold43072 GLEAN promoter 177139 178138 0.999307 + . ID=CGI_10008705; scaffold43072 GLEAN mRNA 178139 190258 0.999307 + . ID=CGI_10008705; scaffold43072 WUBlastX LTR_Gypsy 180079 180162 20 - . . scaffold43072 TRF Tandem_Repeat 181590 181639 100 + . . scaffold43072 GLEAN promoter 183310 184309 0.714416 - . ID=CGI_10008704; scaffold43072 GLEAN mRNA 190073 191902 0.999933 - . ID=CGI_10008706; scaffold43072 WUBlastX LINE_L1 190913 191401 20 - . . scaffold43072 GLEAN promoter 191903 192902 0.999933 - . ID=CGI_10008706; scaffold43072 GLEAN promoter 191969 192968 1 + . ID=CGI_10008707; scaffold43072 TRF Tandem_Repeat 192671 192720 100 + . . scaffold43072 GLEAN mRNA 192969 199541 1 + . ID=CGI_10008707; scaffold43072 TRF Tandem_Repeat 195567 195833 399 + . . scaffold43072 GLEAN mRNA 204200 206828 1 - . ID=CGI_10008708; scaffold43072 GLEAN promoter 206829 207828 1 - . ID=CGI_10008708; scaffold43072 GLEAN mRNA 209027 213404 1 - . ID=CGI_10008709; scaffold43072 TRF Tandem_Repeat 211515 211675 164 + . . scaffold43072 TRF Tandem_Repeat 211704 211811 87 + . . scaffold43072 GLEAN promoter 212703 213702 1 + . ID=CGI_10008710; scaffold43072 GLEAN promoter 213405 214404 1 - . ID=CGI_10008709; scaffold43072 GLEAN mRNA 213703 215341 1 + . ID=CGI_10008710; scaffold43074 GLEAN promoter 782 1781 0.999675 + . ID=CGI_10008685; scaffold43074 GLEAN mRNA 1782 16899 0.999675 + . ID=CGI_10008685; scaffold43074 GLEAN mRNA 20218 23429 0.963005 - . ID=CGI_10008686; scaffold43074 GLEAN promoter 23430 24429 0.963005 - . ID=CGI_10008686; scaffold43074 GLEAN promoter 27665 28664 1 + . ID=CGI_10008687; scaffold43074 GLEAN mRNA 28665 36694 1 + . ID=CGI_10008687; scaffold43074 GLEAN promoter 42360 43359 0.999995 + . ID=CGI_10008688; scaffold43074 GLEAN mRNA 43360 46157 0.999995 + . ID=CGI_10008688; scaffold43074 GLEAN mRNA 67342 93186 0.76115 - . ID=CGI_10008689; scaffold43074 GLEAN promoter 93187 94186 0.76115 - . ID=CGI_10008689; scaffold43074 GLEAN promoter 109105 110104 0.277103 + . ID=CGI_10008690; scaffold43074 GLEAN mRNA 110105 116241 0.277103 + . ID=CGI_10008690; scaffold43074 GLEAN mRNA 142999 150366 0.69729 - . ID=CGI_10008691; scaffold43074 GLEAN promoter 150367 151366 0.69729 - . ID=CGI_10008691; scaffold43074 GLEAN mRNA 156253 158322 0.830332 - . ID=CGI_10008692; scaffold43074 GLEAN promoter 158323 159322 0.830332 - . ID=CGI_10008692; scaffold43074 GLEAN promoter 175086 176085 0.431597 + . ID=CGI_10008693; scaffold43074 GLEAN mRNA 176086 213395 0.431597 + . ID=CGI_10008693; scaffold43074 GLEAN mRNA 178411 181910 0.83395 - . ID=CGI_10008694; scaffold43074 GLEAN promoter 181911 182910 0.83395 - . ID=CGI_10008694; scaffold43076 GLEAN promoter 605 1604 0.999372 + . ID=CGI_10008759; scaffold43076 GLEAN mRNA 1605 1790 0.999372 + . ID=CGI_10008759; scaffold43076 WUBlastX DNA_TcMar-Tc1 9730 10167 83 - . . scaffold43076 WUBlastX DNA_TcMar-Tc1 9739 10431 79 - . . scaffold43076 WUBlastX LINE_RTE-BovB 10699 11427 217 - . . scaffold43076 WUBlastX LINE_RTE-BovB 10702 11316 305 - . . scaffold43076 WUBlastX LINE_RTE-BovB 11436 11939 361 - . . scaffold43076 WUBlastX LINE_Dong-R4 11932 12126 37 - . . scaffold43076 WUBlastX LINE_RTE-BovB 11935 12051 95 - . . scaffold43076 WUBlastX LINE_RTE-BovB 11941 12072 38 - . . scaffold43076 WUBlastX LINE_RTE-X 12511 12807 22 - . . scaffold43076 WUBlastX LINE_RTE-BovB 12688 12924 145 - . . scaffold43076 WUBlastX LINE_RTE-BovB 12927 13010 31 - . . scaffold43076 TRF Tandem_Repeat 18153 18210 59 + . . scaffold43076 GLEAN promoter 33827 34826 1 + . ID=CGI_10008760; scaffold43076 GLEAN mRNA 34827 41266 1 + . ID=CGI_10008760; scaffold43076 TRF Tandem_Repeat 53287 53331 90 + . . scaffold43076 WUBlastX LTR_DIRS 56635 57117 84 + . . scaffold43076 WUBlastX LTR_DIRS 56743 57219 63 + . . scaffold43076 WUBlastX LINE_L1-Tx1 61140 61334 88 - . . scaffold43076 WUBlastX DNA_Kolobok-IS4 64487 64525 22 - . . scaffold43076 WUBlastX DNA_Kolobok-IS4 64545 64688 67 - . . scaffold43076 GLEAN promoter 65506 66505 0.997439 + . ID=CGI_10008761; scaffold43076 GLEAN mRNA 66506 68912 0.997439 + . ID=CGI_10008761; scaffold43076 WUBlastX DNA_IS4EU 66512 66685 23 + . . scaffold43076 WUBlastX DNA_IS4EU 66578 66685 33 + . . scaffold43076 WUBlastX DNA_IS4EU 67403 68029 63 + . . scaffold43076 WUBlastX DNA_IS4EU 67612 67824 79 + . . scaffold43076 WUBlastX DNA_IS4EU 67645 67827 124 + . . scaffold43076 WUBlastX DNA_IS4EU 67645 67869 109 + . . scaffold43076 WUBlastX DNA_Kolobok-IS4 68281 68505 55 - . . scaffold43076 WUBlastX DNA_IS4EU 68308 68583 40 - . . scaffold43076 WUBlastX DNA_Kolobok-IS4 68702 68929 38 - . . scaffold43076 WUBlastX DNA_Harbinger 69207 69560 130 - . . scaffold43076 GLEAN mRNA 69795 70001 0.445313 - . ID=CGI_10008762; scaffold43076 GLEAN promoter 70002 71001 0.445313 - . ID=CGI_10008762; scaffold43076 GLEAN mRNA 70029 70412 0.884126 - . ID=CGI_10008763; scaffold43076 GLEAN promoter 70413 71412 0.884126 - . ID=CGI_10008763; scaffold43076 GLEAN mRNA 70822 73982 0.946553 - . ID=CGI_10008764; scaffold43076 GLEAN promoter 73983 74982 0.946553 - . ID=CGI_10008764; scaffold43076 WUBlastX LINE_RTE-X 83618 83881 170 - . . scaffold43076 WUBlastX LINE_L2 83654 83929 34 - . . scaffold43076 WUBlastX LINE_RTE-BovB 84695 84919 30 - . . scaffold43076 WUBlastX LINE_RTE-X 84743 84868 46 - . . scaffold43076 WUBlastX LINE_RTE-X 84873 85184 116 - . . scaffold43076 WUBlastX LINE_RTE-RTE 84993 85280 63 - . . scaffold43076 WUBlastX LINE_RTE-X 84996 85184 122 - . . scaffold43076 WUBlastX LINE_R2 84996 85235 67 - . . scaffold43076 TRF Tandem_Repeat 93157 93542 292 + . . scaffold43076 TRF Tandem_Repeat 93170 95054 224 + . . scaffold43076 TRF Tandem_Repeat 93532 95103 1469 + . . scaffold43076 TRF Tandem_Repeat 93532 95103 1788 + . . scaffold43076 TRF Tandem_Repeat 93535 95103 1308 + . . scaffold43076 TRF Tandem_Repeat 95113 95354 234 + . . scaffold43076 TRF Tandem_Repeat 95347 95645 162 + . . scaffold43076 TRF Tandem_Repeat 95415 95677 178 + . . scaffold43076 TRF Tandem_Repeat 106871 106919 73 + . . scaffold43076 TRF Tandem_Repeat 106871 106913 59 + . . scaffold43076 WUBlastX DNA_Sola 118628 119041 34 - . . scaffold43076 TRF Tandem_Repeat 122611 122661 93 + . . scaffold43076 TRF Tandem_Repeat 122874 122918 81 + . . scaffold43076 GLEAN promoter 123379 124378 0.999606 + . ID=CGI_10008765; scaffold43076 WUBlastX DNA_IS4EU 124292 124456 56 + . . scaffold43076 GLEAN mRNA 124379 125530 0.999606 + . ID=CGI_10008765; scaffold43076 WUBlastX DNA_IS4EU 124647 124808 27 + . . scaffold43076 GLEAN mRNA 127958 128590 1 - . ID=CGI_10008766; scaffold43076 GLEAN promoter 128591 129590 1 - . ID=CGI_10008766; scaffold43076 GLEAN promoter 133985 134984 0.999112 + . ID=CGI_10008767; scaffold43076 GLEAN mRNA 134985 137219 0.999112 + . ID=CGI_10008767; scaffold43076 TRF Tandem_Repeat 141931 142839 1462 + . . scaffold43076 WUBlastX DNA_Sola 150777 152204 692 + . . scaffold43076 WUBlastX DNA_PiggyBac 157509 157586 27 - . . scaffold43076 WUBlastX DNA_PiggyBac 157540 159111 176 - . . scaffold43076 WUBlastX DNA_PiggyBac 157777 159120 329 - . . scaffold43076 WUBlastX LTR_Gypsy 161652 162611 76 + . . scaffold43076 WUBlastX LTR_Gypsy-Cigr 161820 162497 159 + . . scaffold43076 WUBlastX LTR_Gypsy 161829 162632 78 + . . scaffold43076 WUBlastX LTR_Gypsy 162632 164113 504 + . . scaffold43076 WUBlastX LTR_Gypsy-Cigr 162728 163984 526 + . . scaffold43076 WUBlastX LTR_Gypsy 164074 164367 109 + . . scaffold43076 WUBlastX LTR_Gypsy 164191 165054 314 + . . scaffold43076 WUBlastX LTR_Gypsy-Cigr 164464 165207 464 + . . scaffold43076 WUBlastX LTR_Gypsy 165240 165875 474 + . . scaffold43076 WUBlastX LTR_Gypsy 165869 166450 334 + . . scaffold43076 GLEAN promoter 166087 167086 0.768521 + . ID=CGI_10008768; scaffold43076 GLEAN mRNA 167087 168349 0.768521 + . ID=CGI_10008768; scaffold43076 WUBlastX DNA_Harbinger 169766 169897 24 + . . scaffold43076 TRF Tandem_Repeat 170141 170191 84 + . . scaffold43076 WUBlastX DNA_Harbinger 170264 170461 102 + . . scaffold43076 TRF Tandem_Repeat 172101 173014 1204 + . . scaffold43076 GLEAN mRNA 177922 191367 0.98946 - . ID=CGI_10008769; scaffold43076 WUBlastX RC_Helitron 181025 181531 72 - . . scaffold43076 GLEAN promoter 185716 186715 0.795025 + . ID=CGI_10008770; scaffold43076 GLEAN mRNA 186716 211039 0.795025 + . ID=CGI_10008770; scaffold43076 WUBlastX LTR_Copia 187757 187885 29 - . . scaffold43076 WUBlastX LTR_Gypsy 187822 188442 110 - . . scaffold43076 WUBlastX LTR_Gypsy 187942 188436 218 - . . scaffold43076 WUBlastX LTR_Gypsy 188451 188933 284 - . . scaffold43076 WUBlastX LTR_Gypsy 188460 189044 152 - . . scaffold43076 WUBlastX LTR_Gypsy 188919 189164 73 - . . scaffold43076 WUBlastX LTR_Gypsy 188919 189314 51 - . . scaffold43076 WUBlastX LTR_Gypsy 189596 189658 24 - . . scaffold43076 GLEAN promoter 191368 192367 0.98946 - . ID=CGI_10008769; scaffold43076 GLEAN mRNA 192861 193064 0.999951 - . ID=CGI_10008771; scaffold43076 GLEAN promoter 193065 194064 0.999951 - . ID=CGI_10008771; scaffold43076 WUBlastX LTR_Gypsy-Cigr 195503 195568 25 - . . scaffold43076 WUBlastX LTR_Gypsy 195518 195919 74 - . . scaffold43076 WUBlastX LTR_Gypsy 195880 196272 122 - . . scaffold43076 WUBlastX LTR_Gypsy-Cigr 195955 196809 453 - . . scaffold43076 WUBlastX LTR_Gypsy 196057 196986 110 - . . scaffold43076 WUBlastX LTR_Gypsy 198141 198203 24 - . . scaffold43076 TRF Tandem_Repeat 204224 204299 98 + . . scaffold43076 TRF Tandem_Repeat 204224 204299 98 + . . scaffold43076 TRF Tandem_Repeat 214608 214701 118 + . . scaffold43084 GLEAN mRNA 1752 8491 0.988218 - . ID=CGI_10008563; scaffold43084 WUBlastX LINE_Penelope 2887 3426 258 - . . scaffold43084 WUBlastX LINE_Penelope 3387 4136 497 - . . scaffold43084 GLEAN promoter 8492 9491 0.988218 - . ID=CGI_10008563; scaffold43084 WUBlastX LINE_RTE-X 10407 12086 616 - . . scaffold43084 WUBlastX LINE_RTE-X 12502 13251 176 - . . scaffold43084 WUBlastX LINE_I 13042 13341 58 - . . scaffold43084 WUBlastX LINE_L1 13309 14193 278 - . . scaffold43084 TRF Tandem_Repeat 16905 16951 94 + . . scaffold43084 TRF Tandem_Repeat 29819 29880 115 + . . scaffold43084 TRF Tandem_Repeat 37310 37345 72 + . . scaffold43084 TRF Tandem_Repeat 47317 47355 78 + . . scaffold43084 TRF Tandem_Repeat 54511 54549 78 + . . scaffold43084 GLEAN promoter 76386 77385 0.998756 + . ID=CGI_10008564; scaffold43084 GLEAN mRNA 77386 83421 0.998756 + . ID=CGI_10008564; scaffold43084 TRF Tandem_Repeat 79531 79571 82 + . . scaffold43084 GLEAN promoter 93002 94001 0.998741 + . ID=CGI_10008565; scaffold43084 GLEAN mRNA 94002 112411 0.998741 + . ID=CGI_10008565; scaffold43084 TRF Tandem_Repeat 101283 101457 187 + . . scaffold43084 GLEAN promoter 114635 115634 0.999372 + . ID=CGI_10008566; scaffold43084 GLEAN mRNA 115635 115865 0.999372 + . ID=CGI_10008566; scaffold43084 GLEAN mRNA 122098 122745 0.984283 - . ID=CGI_10008567; scaffold43084 GLEAN promoter 122746 123745 0.984283 - . ID=CGI_10008567; scaffold43084 GLEAN promoter 126440 127439 0.298679 + . ID=CGI_10008568; scaffold43084 TRF Tandem_Repeat 126505 126606 195 + . . scaffold43084 GLEAN mRNA 127440 144570 0.298679 + . ID=CGI_10008568; scaffold43084 TRF Tandem_Repeat 127766 127826 122 + . . scaffold43084 TRF Tandem_Repeat 129878 129937 75 + . . scaffold43084 TRF Tandem_Repeat 130683 130734 50 + . . scaffold43084 TRF Tandem_Repeat 130905 132237 1402 + . . scaffold43084 TRF Tandem_Repeat 140341 140643 561 + . . scaffold43084 WUBlastX DNA_hAT-Tip100 142652 142945 61 + . . scaffold43084 WUBlastX LINE_R2-Hero 144785 145222 23 - . . scaffold43084 TRF Tandem_Repeat 151561 151829 139 + . . scaffold43084 TRF Tandem_Repeat 151564 151780 248 + . . scaffold43084 TRF Tandem_Repeat 152253 152625 319 + . . scaffold43084 TRF Tandem_Repeat 152253 152580 228 + . . scaffold43084 TRF Tandem_Repeat 152306 152625 215 + . . scaffold43084 GLEAN mRNA 158552 160263 0.998384 - . ID=CGI_10008569; scaffold43084 GLEAN promoter 160264 161263 0.998384 - . ID=CGI_10008569; scaffold43084 GLEAN mRNA 164332 184282 0.999676 - . ID=CGI_10008570; scaffold43084 TRF Tandem_Repeat 179038 179093 112 + . . scaffold43084 TRF Tandem_Repeat 179551 179606 112 + . . scaffold43084 TRF Tandem_Repeat 180064 180098 70 + . . scaffold43084 GLEAN promoter 184283 185282 0.999676 - . ID=CGI_10008570; scaffold43084 GLEAN mRNA 185878 210882 0.811128 - . ID=CGI_10008571; scaffold43084 GLEAN promoter 187333 188332 1 + . ID=CGI_10008572; scaffold43084 GLEAN mRNA 188333 190320 1 + . ID=CGI_10008572; scaffold43084 TRF Tandem_Repeat 192165 192458 165 + . . scaffold43084 TRF Tandem_Repeat 192188 192386 117 + . . scaffold43084 TRF Tandem_Repeat 192265 192324 61 + . . scaffold43084 TRF Tandem_Repeat 192367 192431 53 + . . scaffold43084 TRF Tandem_Repeat 192487 192548 79 + . . scaffold43084 TRF Tandem_Repeat 193861 194186 571 + . . scaffold43084 TRF Tandem_Repeat 196319 196344 52 + . . scaffold43084 TRF Tandem_Repeat 199304 199342 78 + . . scaffold43084 TRF Tandem_Repeat 199340 199371 64 + . . scaffold43084 TRF Tandem_Repeat 200126 200666 665 + . . scaffold43084 TRF Tandem_Repeat 200126 200666 665 + . . scaffold43084 TRF Tandem_Repeat 203407 203464 82 + . . scaffold43084 TRF Tandem_Repeat 205599 205785 203 + . . scaffold43084 TRF Tandem_Repeat 205784 205920 112 + . . scaffold43084 TRF Tandem_Repeat 205784 205971 214 + . . scaffold43084 TRF Tandem_Repeat 205862 205973 109 + . . scaffold43084 TRF Tandem_Repeat 206058 206144 113 + . . scaffold43084 TRF Tandem_Repeat 206410 206463 90 + . . scaffold43084 GLEAN promoter 210883 211644 0.811128 - . ID=CGI_10008571; scaffold43108 GLEAN promoter 168 1167 0.999975 + . ID=CGI_10008833; scaffold43108 GLEAN mRNA 1168 5173 0.999975 + . ID=CGI_10008833; scaffold43108 TRF Tandem_Repeat 3329 3368 80 + . . scaffold43108 TRF Tandem_Repeat 3850 3894 90 + . . scaffold43108 TRF Tandem_Repeat 4138 4170 66 + . . scaffold43108 TRF Tandem_Repeat 4240 4276 74 + . . scaffold43108 GLEAN promoter 4785 5784 0.994801 + . ID=CGI_10008834; scaffold43108 GLEAN mRNA 5785 21996 0.994801 + . ID=CGI_10008834; scaffold43108 TRF Tandem_Repeat 11051 11141 175 + . . scaffold43108 TRF Tandem_Repeat 11338 11375 76 + . . scaffold43108 GLEAN mRNA 15778 23848 1 - . ID=CGI_10008835; scaffold43108 TRF Tandem_Repeat 18539 18585 94 + . . scaffold43108 GLEAN promoter 23849 24848 1 - . ID=CGI_10008835; scaffold43108 GLEAN promoter 24539 25538 0.979281 + . ID=CGI_10008836; scaffold43108 GLEAN mRNA 25539 70737 0.979281 + . ID=CGI_10008836; scaffold43108 GLEAN mRNA 28083 31580 1 - . ID=CGI_10008837; scaffold43108 GLEAN promoter 31581 32580 1 - . ID=CGI_10008837; scaffold43108 GLEAN mRNA 42494 50396 1 - . ID=CGI_10008838; scaffold43108 GLEAN promoter 50397 51396 1 - . ID=CGI_10008838; scaffold43108 TRF Tandem_Repeat 63292 63318 54 + . . scaffold43108 TRF Tandem_Repeat 65822 66503 986 + . . scaffold43108 TRF Tandem_Repeat 73945 74070 143 + . . scaffold43108 TRF Tandem_Repeat 74317 74378 124 + . . scaffold43108 TRF Tandem_Repeat 74461 74495 52 + . . scaffold43108 GLEAN promoter 75708 76707 0.999612 + . ID=CGI_10008839; scaffold43108 TRF Tandem_Repeat 75882 76015 159 + . . scaffold43108 GLEAN mRNA 76708 81963 0.999612 + . ID=CGI_10008839; scaffold43108 TRF Tandem_Repeat 76921 76979 118 + . . scaffold43108 GLEAN mRNA 82023 90449 0.702157 - . ID=CGI_10008840; scaffold43108 GLEAN promoter 90450 91449 0.702157 - . ID=CGI_10008840; scaffold43108 TRF Tandem_Repeat 95226 95259 50 + . . scaffold43108 TRF Tandem_Repeat 101323 101642 275 + . . scaffold43108 TRF Tandem_Repeat 101408 101718 214 + . . scaffold43108 TRF Tandem_Repeat 101442 102818 789 + . . scaffold43108 TRF Tandem_Repeat 101473 101568 79 + . . scaffold43108 TRF Tandem_Repeat 101670 102818 999 + . . scaffold43108 TRF Tandem_Repeat 102280 102425 177 + . . scaffold43108 TRF Tandem_Repeat 105938 105996 118 + . . scaffold43108 WUBlastX LTR_Gypsy 123411 123485 23 - . . scaffold43108 WUBlastX LTR_Gypsy 123823 124101 21 - . . scaffold43108 WUBlastX LTR_DIRS 123938 124738 92 - . . scaffold43108 WUBlastX LTR_Gypsy 124100 125035 684 - . . scaffold43108 WUBlastX LTR_Gypsy 124103 125239 671 - . . scaffold43108 WUBlastX LTR_Gypsy 124103 125479 322 - . . scaffold43108 GLEAN promoter 129181 130180 1 + . ID=CGI_10008841; scaffold43108 TRF Tandem_Repeat 129408 129456 98 + . . scaffold43108 TRF Tandem_Repeat 129702 129753 95 + . . scaffold43108 GLEAN mRNA 130181 134357 1 + . ID=CGI_10008841; scaffold43108 TRF Tandem_Repeat 131732 131768 74 + . . scaffold43108 GLEAN mRNA 134435 138636 0.999223 - . ID=CGI_10008842; scaffold43108 TRF Tandem_Repeat 136105 136148 88 + . . scaffold43108 GLEAN promoter 138637 139636 0.999223 - . ID=CGI_10008842; scaffold43108 TRF Tandem_Repeat 142499 142543 63 + . . scaffold43108 TRF Tandem_Repeat 144972 145037 132 + . . scaffold43108 TRF Tandem_Repeat 149374 149437 110 + . . scaffold43108 TRF Tandem_Repeat 153114 153491 353 + . . scaffold43108 TRF Tandem_Repeat 153123 153503 314 + . . scaffold43108 TRF Tandem_Repeat 154171 154428 295 + . . scaffold43108 TRF Tandem_Repeat 154171 154407 296 + . . scaffold43108 WUBlastX LTR_ERVK 157910 158089 24 - . . scaffold43108 WUBlastX LTR_Copia 157958 158122 33 - . . scaffold43108 GLEAN promoter 164469 165468 0.650985 + . ID=CGI_10008843; scaffold43108 GLEAN mRNA 165469 169626 0.650985 + . ID=CGI_10008843; scaffold43108 TRF Tandem_Repeat 168563 168608 83 + . . scaffold43108 TRF Tandem_Repeat 170856 170892 74 + . . scaffold43108 TRF Tandem_Repeat 176481 176528 82 + . . scaffold43108 TRF Tandem_Repeat 176528 176578 102 + . . scaffold43108 TRF Tandem_Repeat 192231 192259 58 + . . scaffold43108 TRF Tandem_Repeat 204962 204987 52 + . . scaffold43116 GLEAN promoter 5311 6310 0.41095 + . ID=CGI_10008804; scaffold43116 GLEAN mRNA 6311 18077 0.41095 + . ID=CGI_10008804; scaffold43116 TRF Tandem_Repeat 8340 8442 163 + . . scaffold43116 GLEAN mRNA 13411 17260 1 - . ID=CGI_10008805; scaffold43116 TRF Tandem_Repeat 15371 15415 90 + . . scaffold43116 GLEAN promoter 17210 18209 0.559691 + . ID=CGI_10008806; scaffold43116 GLEAN promoter 17261 18260 1 - . ID=CGI_10008805; scaffold43116 GLEAN mRNA 18210 25233 0.559691 + . ID=CGI_10008806; scaffold43116 GLEAN mRNA 26398 26601 0.733495 - . ID=CGI_10008807; scaffold43116 GLEAN promoter 26602 27601 0.733495 - . ID=CGI_10008807; scaffold43116 WUBlastX DNA_TcMar-Marin 37939 38277 42 + . . scaffold43116 WUBlastX DNA_TcMar-Marin 37996 38274 73 + . . scaffold43116 WUBlastX DNA_TcMar-Marin 38277 38609 27 + . . scaffold43116 WUBlastX DNA_TcMar-Marin 38277 38402 27 + . . scaffold43116 WUBlastX LTR_Pao 39147 39221 45 - . . scaffold43116 WUBlastX LTR_Pao 39147 39236 26 - . . scaffold43116 WUBlastX LTR_Pao 39238 39756 310 - . . scaffold43116 WUBlastX LTR_Pao 39755 40027 72 - . . scaffold43116 WUBlastX LTR_Pao 39755 39985 180 - . . scaffold43116 WUBlastX LTR_Pao 39755 39943 200 - . . scaffold43116 WUBlastX LTR_Pao 40141 40227 61 - . . scaffold43116 WUBlastX LTR_Pao 40234 40386 51 - . . scaffold43116 WUBlastX LTR_Pao 40261 40404 64 - . . scaffold43116 WUBlastX LTR_Pao 40285 40482 30 - . . scaffold43116 WUBlastX LTR_Pao 40501 40800 44 - . . scaffold43116 WUBlastX LTR_Pao 40773 40937 45 - . . scaffold43116 WUBlastX LTR_Pao 40815 40931 68 - . . scaffold43116 WUBlastX LTR_Pao 40943 41254 81 - . . scaffold43116 WUBlastX LTR_Pao 41214 41321 26 - . . scaffold43116 WUBlastX LTR_Pao 42148 42462 41 - . . scaffold43116 WUBlastX LTR_Pao 42233 42346 43 - . . scaffold43116 WUBlastX LTR_Pao 42328 42462 61 - . . scaffold43116 WUBlastX LTR_Pao 42595 43110 63 - . . scaffold43116 WUBlastX LTR_Pao 42742 43206 65 - . . scaffold43116 WUBlastX LTR_Pao 43074 43307 40 - . . scaffold43116 WUBlastX LTR_Pao 43074 43481 27 - . . scaffold43116 WUBlastX LTR_Pao 43487 43660 59 - . . scaffold43116 WUBlastX LTR_Pao 43621 43923 20 - . . scaffold43116 WUBlastX LTR_Pao 44251 44460 32 - . . scaffold43116 GLEAN promoter 46223 47222 0.988376 + . ID=CGI_10008808; scaffold43116 GLEAN mRNA 47223 64768 0.988376 + . ID=CGI_10008808; scaffold43116 TRF Tandem_Repeat 49141 49248 84 + . . scaffold43116 TRF Tandem_Repeat 49276 49376 87 + . . scaffold43116 TRF Tandem_Repeat 51117 51307 138 + . . scaffold43116 TRF Tandem_Repeat 54839 54998 241 + . . scaffold43116 TRF Tandem_Repeat 56326 56366 82 + . . scaffold43116 TRF Tandem_Repeat 56987 57039 61 + . . scaffold43116 TRF Tandem_Repeat 56993 57039 62 + . . scaffold43116 GLEAN mRNA 63046 73201 0.38262 - . ID=CGI_10008809; scaffold43116 GLEAN promoter 73202 74201 0.38262 - . ID=CGI_10008809; scaffold43116 GLEAN mRNA 77947 82972 0.99996 - . ID=CGI_10008810; scaffold43116 GLEAN promoter 82973 83972 0.99996 - . ID=CGI_10008810; scaffold43116 GLEAN promoter 83149 84148 1 + . ID=CGI_10008811; scaffold43116 GLEAN mRNA 84149 90058 1 + . ID=CGI_10008811; scaffold43116 TRF Tandem_Repeat 84473 84501 58 + . . scaffold43116 GLEAN mRNA 94034 106356 0.999676 - . ID=CGI_10008812; scaffold43116 WUBlastX LTR_Gypsy 103888 104058 75 - . . scaffold43116 WUBlastX LTR_Gypsy 103933 104070 78 - . . scaffold43116 GLEAN promoter 106357 107356 0.999676 - . ID=CGI_10008812; scaffold43116 TRF Tandem_Repeat 107332 110531 4374 + . . scaffold43116 TRF Tandem_Repeat 107332 110531 4417 + . . scaffold43116 TRF Tandem_Repeat 112502 112709 373 + . . scaffold43116 GLEAN mRNA 114325 118028 1 - . ID=CGI_10008813; scaffold43116 TRF Tandem_Repeat 117314 117370 105 + . . scaffold43116 GLEAN promoter 118029 119028 1 - . ID=CGI_10008813; scaffold43116 GLEAN promoter 120992 121991 1 + . ID=CGI_10008814; scaffold43116 GLEAN mRNA 121992 125171 1 + . ID=CGI_10008814; scaffold43116 TRF Tandem_Repeat 128162 128209 69 + . . scaffold43116 GLEAN mRNA 129418 143793 1 - . ID=CGI_10008815; scaffold43116 WUBlastX LTR_Gypsy 140271 141452 723 - . . scaffold43116 GLEAN promoter 143221 144220 1 + . ID=CGI_10008816; scaffold43116 GLEAN promoter 143794 144793 1 - . ID=CGI_10008815; scaffold43116 GLEAN mRNA 144221 150717 1 + . ID=CGI_10008816; scaffold43116 TRF Tandem_Repeat 145610 145648 78 + . . scaffold43116 TRF Tandem_Repeat 150735 150773 51 + . . scaffold43116 TRF Tandem_Repeat 150774 150809 63 + . . scaffold43116 GLEAN mRNA 154827 175409 0.997059 - . ID=CGI_10008817; scaffold43116 TRF Tandem_Repeat 170468 170521 108 + . . scaffold43116 TRF Tandem_Repeat 170659 170730 108 + . . scaffold43116 GLEAN promoter 175410 176409 0.997059 - . ID=CGI_10008817; scaffold43116 TRF Tandem_Repeat 176222 176247 52 + . . scaffold43116 TRF Tandem_Repeat 176965 176996 64 + . . scaffold43116 GLEAN promoter 178257 179256 0.999635 + . ID=CGI_10008818; scaffold43116 GLEAN mRNA 179257 180153 0.999635 + . ID=CGI_10008818; scaffold43116 WUBlastX LINE_Penelope 182744 183037 31 + . . scaffold43116 GLEAN mRNA 184004 184651 0.999999 - . ID=CGI_10008819; scaffold43116 GLEAN promoter 184652 185651 0.999999 - . ID=CGI_10008819; scaffold43116 TRF Tandem_Repeat 185729 185783 110 + . . scaffold43116 GLEAN mRNA 202789 209466 0.999941 - . ID=CGI_10008821; scaffold43116 TRF Tandem_Repeat 205116 205152 56 + . . scaffold43116 GLEAN promoter 209467 210466 0.999941 - . ID=CGI_10008821; scaffold43116 WUBlastX DNA_IS4EU 210452 211246 83 + . . scaffold43116 WUBlastX DNA_IS4EU 210713 211222 109 + . . scaffold43122 TRF Tandem_Repeat 2587 2955 449 + . . scaffold43122 TRF Tandem_Repeat 7719 7876 248 + . . scaffold43122 TRF Tandem_Repeat 7882 8490 516 + . . scaffold43122 TRF Tandem_Repeat 8496 8926 492 + . . scaffold43122 GLEAN mRNA 10155 27477 0.988225 - . ID=CGI_10008930; scaffold43122 TRF Tandem_Repeat 10674 10737 51 + . . scaffold43122 TRF Tandem_Repeat 11812 11850 78 + . . scaffold43122 TRF Tandem_Repeat 19624 19771 77 + . . scaffold43122 TRF Tandem_Repeat 20464 20632 160 + . . scaffold43122 TRF Tandem_Repeat 22480 22527 96 + . . scaffold43122 GLEAN promoter 27478 28477 0.988225 - . ID=CGI_10008930; scaffold43122 GLEAN promoter 27539 28538 0.999491 + . ID=CGI_10008931; scaffold43122 TRF Tandem_Repeat 28341 28369 58 + . . scaffold43122 GLEAN mRNA 28539 33047 0.999491 + . ID=CGI_10008931; scaffold43122 TRF Tandem_Repeat 31100 31139 62 + . . scaffold43122 GLEAN mRNA 36454 44594 0.477001 - . ID=CGI_10008932; scaffold43122 GLEAN promoter 44595 45594 0.477001 - . ID=CGI_10008932; scaffold43122 GLEAN promoter 48222 49221 0.999973 + . ID=CGI_10008933; scaffold43122 GLEAN mRNA 49222 61706 0.999973 + . ID=CGI_10008933; scaffold43122 TRF Tandem_Repeat 51887 52295 435 + . . scaffold43122 GLEAN mRNA 66681 67493 0.59015 - . ID=CGI_10008934; scaffold43122 GLEAN promoter 67494 68493 0.59015 - . ID=CGI_10008934; scaffold43122 GLEAN promoter 73836 74835 0.510666 + . ID=CGI_10008935; scaffold43122 GLEAN promoter 74079 75078 0.99566 + . ID=CGI_10008936; scaffold43122 GLEAN mRNA 74836 75063 0.510666 + . ID=CGI_10008935; scaffold43122 GLEAN mRNA 75079 75402 0.99566 + . ID=CGI_10008936; scaffold43122 WUBlastX LINE_RTE-X 75356 75634 172 + . . scaffold43122 WUBlastX LINE_RTE-X 75689 76156 335 + . . scaffold43122 WUBlastX LINE_RTE-X 76131 76388 86 + . . scaffold43122 WUBlastX LINE_RTE-X 76363 76755 83 + . . scaffold43122 WUBlastX LTR_Ngaro 76781 77185 311 + . . scaffold43122 WUBlastX LTR_Ngaro 77190 77723 319 + . . scaffold43122 WUBlastX LTR_Ngaro 77720 77968 146 + . . scaffold43122 WUBlastX LINE_L1 77989 78054 25 + . . scaffold43122 WUBlastX LINE_RTE-X 78118 79203 695 + . . scaffold43122 WUBlastX LINE_RTE-X 78223 79518 330 + . . scaffold43122 WUBlastX LINE_RTE-X 79207 79824 151 + . . scaffold43122 WUBlastX LINE_RTE-X 79207 79707 276 + . . scaffold43122 GLEAN mRNA 81777 82331 0.999372 - . ID=CGI_10008937; scaffold43122 GLEAN promoter 82332 83331 0.999372 - . ID=CGI_10008937; scaffold43122 GLEAN mRNA 88888 90540 0.558391 - . ID=CGI_10008938; scaffold43122 GLEAN promoter 90541 91540 0.558391 - . ID=CGI_10008938; scaffold43122 GLEAN mRNA 92964 93188 1 - . ID=CGI_10008939; scaffold43122 GLEAN promoter 93189 94188 1 - . ID=CGI_10008939; scaffold43122 WUBlastX LINE_L1-Tx1 110248 110682 66 + . . scaffold43122 WUBlastX LINE_L1-Tx1 110317 110805 40 + . . scaffold43122 TRF Tandem_Repeat 115465 115494 51 + . . scaffold43122 GLEAN mRNA 115837 148634 0.68095 - . ID=CGI_10008940; scaffold43122 TRF Tandem_Repeat 116721 116755 70 + . . scaffold43122 TRF Tandem_Repeat 116753 116811 95 + . . scaffold43122 WUBlastX LINE_Penelope 135339 135494 46 + . . scaffold43122 WUBlastX LINE_Penelope 135500 136057 182 + . . scaffold43122 TRF Tandem_Repeat 136567 136612 92 + . . scaffold43122 WUBlastX LTR_DIRS 139544 139816 46 + . . scaffold43122 WUBlastX LTR_DIRS 139957 140142 110 + . . scaffold43122 WUBlastX LTR_DIRS 140960 141328 119 + . . scaffold43122 WUBlastX LTR_DIRS 141412 141546 23 + . . scaffold43122 WUBlastX LTR_DIRS 142929 143192 24 + . . scaffold43122 WUBlastX LTR_DIRS 143846 143968 27 + . . scaffold43122 WUBlastX LTR_DIRS 145429 145917 268 + . . scaffold43122 GLEAN promoter 148635 149634 0.68095 - . ID=CGI_10008940; scaffold43122 WUBlastX LINE_RTE-BovB 157777 158433 230 - . . scaffold43122 WUBlastX LTR_Gypsy 159659 161560 1485 - . . scaffold43122 WUBlastX LTR_Gypsy-Cigr 161539 162483 864 - . . scaffold43122 WUBlastX LTR_Gypsy-Cigr 161566 162660 855 - . . scaffold43122 WUBlastX LTR_Gypsy 162680 163129 62 - . . scaffold43122 WUBlastX LTR_Gypsy-Cigr 162767 163390 215 - . . scaffold43122 WUBlastX LTR_Gypsy 162878 163303 237 - . . scaffold43122 WUBlastX LTR_Gypsy-Cigr 163405 164217 223 - . . scaffold43122 WUBlastX LINE_L2 165282 165452 48 - . . scaffold43122 WUBlastX LINE_L2 165464 165736 79 - . . scaffold43122 WUBlastX LINE_RTE-BovB 165776 165952 89 - . . scaffold43122 WUBlastX LINE_RTE-BovB 166137 166307 62 - . . scaffold43122 WUBlastX LINE_RTE-BovB 166748 166873 60 - . . scaffold43122 GLEAN mRNA 169719 183885 0.999898 - . ID=CGI_10008941; scaffold43122 TRF Tandem_Repeat 181039 181071 66 + . . scaffold43122 GLEAN promoter 183271 184270 1 + . ID=CGI_10008942; scaffold43122 GLEAN promoter 183886 184885 0.999898 - . ID=CGI_10008941; scaffold43122 GLEAN mRNA 184271 189580 1 + . ID=CGI_10008942; scaffold43122 TRF Tandem_Repeat 206510 206661 304 + . . scaffold43122 WUBlastX LTR_Ngaro 207774 207992 54 - . . scaffold43130 GLEAN mRNA 1083 27544 0.999898 - . ID=CGI_10008957; scaffold43130 TRF Tandem_Repeat 4324 4361 60 + . . scaffold43130 GLEAN promoter 26501 27500 0.994004 + . ID=CGI_10008958; scaffold43130 GLEAN mRNA 27501 44080 0.994004 + . ID=CGI_10008958; scaffold43130 GLEAN promoter 27545 28544 0.999898 - . ID=CGI_10008957; scaffold43130 GLEAN mRNA 33942 44054 1 - . ID=CGI_10008959; scaffold43130 TRF Tandem_Repeat 35965 36060 67 + . . scaffold43130 GLEAN promoter 44055 45054 1 - . ID=CGI_10008959; scaffold43130 WUBlastX DNA_TcMar-Tc1 44232 44480 39 + . . scaffold43130 TRF Tandem_Repeat 48097 48138 84 + . . scaffold43130 GLEAN mRNA 48468 48815 0.998882 - . ID=CGI_10008960; scaffold43130 GLEAN promoter 48816 49815 0.998882 - . ID=CGI_10008960; scaffold43130 GLEAN mRNA 49025 56038 0.613322 - . ID=CGI_10008961; scaffold43130 GLEAN promoter 56039 57038 0.613322 - . ID=CGI_10008961; scaffold43130 TRF Tandem_Repeat 61435 61496 51 + . . scaffold43130 TRF Tandem_Repeat 65424 65454 53 + . . scaffold43130 GLEAN promoter 68407 69406 0.996188 + . ID=CGI_10008962; scaffold43130 GLEAN mRNA 69407 86356 0.996188 + . ID=CGI_10008962; scaffold43130 TRF Tandem_Repeat 87948 87987 71 + . . scaffold43130 GLEAN mRNA 99127 140133 0.992485 - . ID=CGI_10008963; scaffold43130 TRF Tandem_Repeat 108064 108099 72 + . . scaffold43130 TRF Tandem_Repeat 115724 115765 84 + . . scaffold43130 TRF Tandem_Repeat 122007 122053 58 + . . scaffold43130 WUBlastX LINE_RTE-X 122084 122569 52 + . . scaffold43130 WUBlastX LINE_RTE-X 122180 122704 27 + . . scaffold43130 WUBlastX LINE_RTE-X 122237 122569 81 + . . scaffold43130 WUBlastX LINE_RTE-X 122354 122599 90 + . . scaffold43130 GLEAN promoter 140134 141133 0.992485 - . ID=CGI_10008963; scaffold43130 TRF Tandem_Repeat 143550 143597 96 + . . scaffold43130 TRF Tandem_Repeat 145282 145336 110 + . . scaffold43130 GLEAN mRNA 158411 195443 0.532479 - . ID=CGI_10008964; scaffold43130 WUBlastX LINE_CR1-L2 166860 167051 52 + . . scaffold43130 GLEAN promoter 173159 174158 1 + . ID=CGI_10008965; scaffold43130 TRF Tandem_Repeat 173778 173812 70 + . . scaffold43130 GLEAN mRNA 174159 177700 1 + . ID=CGI_10008965; scaffold43130 TRF Tandem_Repeat 182168 183736 1685 + . . scaffold43130 TRF Tandem_Repeat 182444 183736 1572 + . . scaffold43130 TRF Tandem_Repeat 183906 183948 56 + . . scaffold43130 GLEAN promoter 195444 196443 0.532479 - . ID=CGI_10008964; scaffold43130 WUBlastX LINE_RTE-X 204262 204864 319 - . . scaffold43130 WUBlastX LINE_RTE-X 204843 204980 61 - . . scaffold43130 TRF Tandem_Repeat 208827 208862 72 + . . scaffold43130 GLEAN mRNA 209386 210228 0.999928 - . ID=CGI_10008966; scaffold43130 GLEAN promoter 210229 211228 0.999928 - . ID=CGI_10008966; scaffold43130 WUBlastX LINE_RTE-X 211217 211435 57 - . . scaffold43130 WUBlastX LINE_RTE-X 211217 211366 65 - . . scaffold43130 WUBlastX LTR_Gypsy 212984 213121 102 + . . scaffold43130 WUBlastX LTR_Gypsy 213096 216419 1728 + . . scaffold43130 WUBlastX LTR_Gypsy 213870 216419 2164 + . . scaffold43130 WUBlastX LTR_Gypsy 216425 216985 278 + . . scaffold43130 TRF Tandem_Repeat 221138 221175 76 + . . scaffold43134 GLEAN promoter 4554 5553 1 + . ID=CGI_10008885; scaffold43134 GLEAN mRNA 5554 5991 1 + . ID=CGI_10008885; scaffold43134 TRF Tandem_Repeat 9983 10244 301 + . . scaffold43134 GLEAN mRNA 12074 15738 1 - . ID=CGI_10008886; scaffold43134 GLEAN promoter 15739 16738 1 - . ID=CGI_10008886; scaffold43134 TRF Tandem_Repeat 24523 24575 106 + . . scaffold43134 TRF Tandem_Repeat 29185 29248 128 + . . scaffold43134 GLEAN mRNA 32609 40524 0.451345 - . ID=CGI_10008887; scaffold43134 TRF Tandem_Repeat 33328 33376 98 + . . scaffold43134 GLEAN promoter 40525 41524 0.451345 - . ID=CGI_10008887; scaffold43134 GLEAN promoter 45206 46205 0.999994 + . ID=CGI_10008888; scaffold43134 GLEAN mRNA 46206 48648 0.999994 + . ID=CGI_10008888; scaffold43134 TRF Tandem_Repeat 49630 49707 156 + . . scaffold43134 TRF Tandem_Repeat 52264 53061 1053 + . . scaffold43134 TRF Tandem_Repeat 52264 53061 1114 + . . scaffold43134 TRF Tandem_Repeat 52264 53054 1015 + . . scaffold43134 TRF Tandem_Repeat 53654 53690 74 + . . scaffold43134 GLEAN promoter 53933 54932 1 + . ID=CGI_10008889; scaffold43134 GLEAN mRNA 54933 57895 1 + . ID=CGI_10008889; scaffold43134 GLEAN mRNA 64061 65782 0.999999 - . ID=CGI_10008890; scaffold43134 GLEAN promoter 65783 66782 0.999999 - . ID=CGI_10008890; scaffold43134 TRF Tandem_Repeat 66906 66959 108 + . . scaffold43134 TRF Tandem_Repeat 73120 73153 50 + . . scaffold43134 GLEAN mRNA 85275 90468 1 - . ID=CGI_10008891; scaffold43134 GLEAN promoter 90039 91038 0.989395 + . ID=CGI_10008892; scaffold43134 GLEAN promoter 90469 91468 1 - . ID=CGI_10008891; scaffold43134 GLEAN mRNA 91039 105157 0.989395 + . ID=CGI_10008892; scaffold43134 GLEAN mRNA 107519 111348 1 - . ID=CGI_10008893; scaffold43134 GLEAN promoter 111349 112348 1 - . ID=CGI_10008893; scaffold43134 GLEAN promoter 111356 112355 0.987687 + . ID=CGI_10008894; scaffold43134 GLEAN mRNA 112356 120999 0.987687 + . ID=CGI_10008894; scaffold43134 TRF Tandem_Repeat 113574 113623 75 + . . scaffold43134 TRF Tandem_Repeat 113796 115702 3593 + . . scaffold43134 GLEAN mRNA 123354 134081 0.999999 - . ID=CGI_10008895; scaffold43134 GLEAN promoter 125924 126923 0.498925 + . ID=CGI_10008896; scaffold43134 GLEAN mRNA 126924 141486 0.498925 + . ID=CGI_10008896; scaffold43134 GLEAN promoter 134082 135081 0.999999 - . ID=CGI_10008895; scaffold43134 WUBlastX LINE_RTE-X 137535 138848 517 - . . scaffold43134 WUBlastX LINE_RTE-BovB 138303 138962 58 - . . scaffold43134 TRF Tandem_Repeat 140825 140872 96 + . . scaffold43134 TRF Tandem_Repeat 143908 143960 106 + . . scaffold43134 GLEAN promoter 144623 145622 0.468222 + . ID=CGI_10008897; scaffold43134 GLEAN mRNA 145623 189907 0.468222 + . ID=CGI_10008897; scaffold43134 TRF Tandem_Repeat 149233 151208 3055 + . . scaffold43134 TRF Tandem_Repeat 160309 160359 102 + . . scaffold43134 TRF Tandem_Repeat 161836 161883 96 + . . scaffold43134 WUBlastX LTR_DIRS 193696 194352 30 - . . scaffold43134 WUBlastX LTR_DIRS 193917 194081 40 - . . scaffold43134 WUBlastX LTR_DIRS 194350 194430 51 - . . scaffold43134 TRF Tandem_Repeat 197833 197935 61 + . . scaffold43134 TRF Tandem_Repeat 201080 201193 183 + . . scaffold43134 TRF Tandem_Repeat 203254 203288 70 + . . scaffold43134 TRF Tandem_Repeat 203318 203356 78 + . . scaffold43134 GLEAN promoter 204984 205983 0.990712 + . ID=CGI_10008898; scaffold43134 GLEAN mRNA 205984 218530 0.990712 + . ID=CGI_10008898; scaffold43134 WUBlastX DNA_IS4EU 211056 211280 45 + . . scaffold43134 WUBlastX DNA_IS4EU 211417 211920 177 + . . scaffold43134 GLEAN mRNA 212178 214956 0.948909 - . ID=CGI_10008899; scaffold43134 WUBlastX DNA_IS4EU 212256 212468 114 - . . scaffold43134 WUBlastX DNA_IS4EU 213022 213642 372 - . . scaffold43134 WUBlastX DNA_IS4EU 213753 213926 49 - . . scaffold43134 WUBlastX DNA_IS4EU 214645 214956 54 - . . scaffold43134 GLEAN promoter 214957 215956 0.948909 - . ID=CGI_10008899; scaffold43134 TRF Tandem_Repeat 219207 219420 322 + . . scaffold43136 WUBlastX DNA_Harbinger 3623 3883 108 - . . scaffold43136 WUBlastX LTR_Gypsy 3886 3930 22 + . . scaffold43136 WUBlastX LTR_Gypsy-Cigr 4100 4216 77 + . . scaffold43136 WUBlastX LTR_Gypsy 4100 4291 53 + . . scaffold43136 WUBlastX LTR_Gypsy 4242 4433 51 + . . scaffold43136 WUBlastX LTR_Gypsy 4347 4553 39 + . . scaffold43136 GLEAN mRNA 5532 6056 0.999994 - . ID=CGI_10008999; scaffold43136 GLEAN promoter 6057 7056 0.999994 - . ID=CGI_10008999; scaffold43136 GLEAN mRNA 7432 7635 0.999372 - . ID=CGI_10009000; scaffold43136 WUBlastX LTR_Gypsy 7436 8074 71 + . . scaffold43136 GLEAN promoter 7636 8635 0.999372 - . ID=CGI_10009000; scaffold43136 WUBlastX LTR_Gypsy 7880 8113 65 + . . scaffold43136 WUBlastX LTR_Gypsy-Cigr 7880 8071 98 + . . scaffold43136 WUBlastX LTR_Gypsy 7880 8155 44 + . . scaffold43136 WUBlastX LINE_CR1-L2 15167 15313 31 + . . scaffold43136 TRF Tandem_Repeat 20143 21269 1619 + . . scaffold43136 TRF Tandem_Repeat 21300 21339 62 + . . scaffold43136 TRF Tandem_Repeat 29130 29257 116 + . . scaffold43136 TRF Tandem_Repeat 29143 29251 121 + . . scaffold43136 GLEAN mRNA 31344 33131 0.999476 - . ID=CGI_10009001; scaffold43136 GLEAN promoter 33132 34131 0.999476 - . ID=CGI_10009001; scaffold43136 WUBlastX RC_Helitron 33517 36846 578 - . . scaffold43136 WUBlastX RC_Helitron 35971 37008 326 - . . scaffold43136 WUBlastX RC_Helitron 36943 37413 60 - . . scaffold43136 WUBlastX RC_Helitron 37174 37530 34 - . . scaffold43136 WUBlastX RC_Helitron 38113 38625 67 - . . scaffold43136 WUBlastX DNA_hAT-Tip100 40168 40752 100 + . . scaffold43136 WUBlastX DNA_hAT-Tip100 40432 40776 165 + . . scaffold43136 WUBlastX DNA_hAT 40778 40963 86 + . . scaffold43136 WUBlastX DNA_hAT 40826 40987 97 + . . scaffold43136 WUBlastX DNA_hAT-Tip100 40999 41106 38 + . . scaffold43136 WUBlastX DNA_hAT-Tip100 41103 42140 357 + . . scaffold43136 WUBlastX DNA_hAT-Tip100 41943 42182 76 + . . scaffold43136 WUBlastX DNA_TcMar-Tc1 52535 53566 420 + . . scaffold43136 TRF Tandem_Repeat 55432 56233 1352 + . . scaffold43136 GLEAN mRNA 63660 75086 0.999676 - . ID=CGI_10009002; scaffold43136 TRF Tandem_Repeat 67149 67453 371 + . . scaffold43136 TRF Tandem_Repeat 67453 67901 591 + . . scaffold43136 TRF Tandem_Repeat 70535 70835 541 + . . scaffold43136 TRF Tandem_Repeat 71367 71437 135 + . . scaffold43136 TRF Tandem_Repeat 71986 72043 109 + . . scaffold43136 GLEAN promoter 75087 76086 0.999676 - . ID=CGI_10009002; scaffold43136 WUBlastX LINE_RTE-X 78371 78601 31 - . . scaffold43136 WUBlastX LINE_RTE-X 78413 78601 63 - . . scaffold43136 WUBlastX LINE_RTE-X 78443 78601 68 - . . scaffold43136 GLEAN promoter 78729 79728 0.996199 + . ID=CGI_10009003; scaffold43136 GLEAN mRNA 79729 81381 0.996199 + . ID=CGI_10009003; scaffold43136 GLEAN promoter 86488 87487 0.988637 + . ID=CGI_10009004; scaffold43136 GLEAN mRNA 87488 89179 0.988637 + . ID=CGI_10009004; scaffold43136 GLEAN promoter 89444 90443 0.999968 + . ID=CGI_10009005; scaffold43136 GLEAN mRNA 90444 90812 0.999968 + . ID=CGI_10009005; scaffold43136 WUBlastX LINE_Penelope 91734 91937 46 + . . scaffold43136 TRF Tandem_Repeat 91976 92023 62 + . . scaffold43136 WUBlastX LINE_CR1-L2 99707 99895 36 + . . scaffold43136 WUBlastX LINE_I 102175 102222 22 + . . scaffold43136 WUBlastX LINE_L1-Tx1 102409 102753 22 + . . scaffold43136 WUBlastX LINE_L1-Tx1 102466 102753 49 + . . scaffold43136 WUBlastX LINE_L1-Tx1 102523 102759 74 + . . scaffold43136 WUBlastX LINE_L1-Tx1 102695 104026 638 + . . scaffold43136 WUBlastX LINE_L1 102731 105028 442 + . . scaffold43136 WUBlastX LINE_L1 104948 105058 23 + . . scaffold43136 WUBlastX LTR_Gypsy 105776 106381 496 + . . scaffold43136 WUBlastX LTR_Gypsy 106386 106502 50 + . . scaffold43136 WUBlastX LTR_Gypsy-Cigr 106404 107909 931 + . . scaffold43136 TRF Tandem_Repeat 114821 114906 57 + . . scaffold43136 TRF Tandem_Repeat 114821 114907 86 + . . scaffold43136 TRF Tandem_Repeat 115424 115467 88 + . . scaffold43136 WUBlastX LTR_Gypsy 128384 132238 2928 - . . scaffold43136 WUBlastX LTR_Gypsy 132385 132441 23 - . . scaffold43136 WUBlastX LTR_Gypsy 132420 132596 23 - . . scaffold43136 WUBlastX LTR_Gypsy 132531 133034 209 - . . scaffold43136 WUBlastX LTR_Gypsy 133027 133296 133 - . . scaffold43136 WUBlastX LTR_ERV1 133326 133511 22 - . . scaffold43136 TRF Tandem_Repeat 138278 138368 94 + . . scaffold43136 WUBlastX LINE_CR1-L2 142599 142685 53 - . . scaffold43136 WUBlastX LINE_CR1-L2 148404 148877 74 + . . scaffold43136 WUBlastX LINE_CR1-L2 148494 148838 79 + . . scaffold43136 WUBlastX LINE_L2 149090 149248 20 + . . scaffold43136 TRF Tandem_Repeat 159005 159058 108 + . . scaffold43136 GLEAN promoter 159408 160407 0.989313 + . ID=CGI_10009007; scaffold43136 TRF Tandem_Repeat 160156 160194 78 + . . scaffold43136 GLEAN mRNA 160408 161448 0.989313 + . ID=CGI_10009007; scaffold43136 WUBlastX LINE_L1-Tx1 168967 169794 203 - . . scaffold43136 WUBlastX LINE_L1-Tx1 169790 170173 248 - . . scaffold43136 WUBlastX LINE_L1-Tx1 170176 170334 85 - . . scaffold43136 WUBlastX LINE_L1-Tx1 170295 170576 162 - . . scaffold43136 WUBlastX LINE_L1-Tx1 170295 170780 87 - . . scaffold43136 WUBlastX LINE_L1 170304 170675 126 - . . scaffold43136 WUBlastX LINE_L1 170705 171022 39 - . . scaffold43136 WUBlastX LINE_L1-Tx1 170909 171094 30 - . . scaffold43136 WUBlastX LINE_L1-Tx1 171057 171305 22 - . . scaffold43136 WUBlastX LINE_L1 171138 171311 29 - . . scaffold43136 WUBlastX LINE_L1-Tx1 171304 171654 126 - . . scaffold43136 WUBlastX LTR_Gypsy 173580 174047 67 + . . scaffold43136 TRF Tandem_Repeat 183094 183374 532 + . . scaffold43136 TRF Tandem_Repeat 188036 188073 53 + . . scaffold43136 TRF Tandem_Repeat 188040 188075 54 + . . scaffold43136 TRF Tandem_Repeat 190335 190381 85 + . . scaffold43136 TRF Tandem_Repeat 198585 198794 229 + . . scaffold43136 TRF Tandem_Repeat 198586 198836 252 + . . scaffold43136 TRF Tandem_Repeat 198586 198836 257 + . . scaffold43136 TRF Tandem_Repeat 198720 198836 130 + . . scaffold43136 TRF Tandem_Repeat 198873 198997 88 + . . scaffold43136 TRF Tandem_Repeat 202650 202712 126 + . . scaffold43136 GLEAN promoter 206372 207371 0.531613 + . ID=CGI_10009008; scaffold43136 GLEAN mRNA 207372 208547 0.531613 + . ID=CGI_10009008; scaffold43136 GLEAN mRNA 211972 212526 0.984842 - . ID=CGI_10009009; scaffold43136 GLEAN promoter 212527 213526 0.984842 - . ID=CGI_10009009; scaffold43136 TRF Tandem_Repeat 213208 213251 70 + . . scaffold43136 WUBlastX LINE_RTE-X 217827 218114 31 - . . scaffold43136 WUBlastX LINE_RTE-X 217872 218114 92 - . . scaffold43136 TRF Tandem_Repeat 221230 221334 194 + . . scaffold43146 WUBlastX LINE_I 7324 7416 21 + . . scaffold43146 WUBlastX LINE_L1-Tx1 7403 8038 125 + . . scaffold43146 WUBlastX LINE_L1-Tx1 7514 8035 220 + . . scaffold43146 WUBlastX LINE_L1-Tx1 7914 8507 224 + . . scaffold43146 WUBlastX LINE_L1 8049 8492 239 + . . scaffold43146 WUBlastX LINE_L1-Tx1 8242 9729 54 + . . scaffold43146 WUBlastX LINE_L1-Tx1 8554 9525 184 + . . scaffold43146 WUBlastX LTR_Pao 11331 11435 24 + . . scaffold43146 WUBlastX LTR_Pao 11355 11444 46 + . . scaffold43146 WUBlastX LTR_Pao 11493 11996 60 + . . scaffold43146 WUBlastX LTR_Pao 11607 12026 234 + . . scaffold43146 WUBlastX LTR_Pao 12032 12139 32 + . . scaffold43146 WUBlastX LTR_Pao 12065 12352 85 + . . scaffold43146 WUBlastX LTR_Pao 12092 12412 44 + . . scaffold43146 TRF Tandem_Repeat 14561 14586 52 + . . scaffold43146 WUBlastX LINE_L1 14728 14793 23 - . . scaffold43146 WUBlastX LINE_RTE-X 14760 16328 798 - . . scaffold43146 WUBlastX LINE_CR1 16011 16391 85 - . . scaffold43146 WUBlastX LINE_L2 16587 16661 22 - . . scaffold43146 TRF Tandem_Repeat 18352 18454 59 + . . scaffold43146 TRF Tandem_Repeat 41604 41875 535 + . . scaffold43146 TRF Tandem_Repeat 56926 56982 114 + . . scaffold43146 TRF Tandem_Repeat 58562 58618 114 + . . scaffold43146 WUBlastX LTR_Ngaro 62934 63173 138 + . . scaffold43146 WUBlastX LTR_Ngaro 62940 63419 58 + . . scaffold43146 WUBlastX LTR_Ngaro 62949 63335 76 + . . scaffold43146 WUBlastX LTR_Ngaro 63478 64143 444 + . . scaffold43146 WUBlastX LTR_Ngaro 63559 64266 240 + . . scaffold43146 WUBlastX LTR_Ngaro 64230 64505 175 + . . scaffold43146 WUBlastX LTR_Ngaro 64385 65095 311 + . . scaffold43146 WUBlastX LTR_Ngaro 64505 65107 332 + . . scaffold43146 WUBlastX LTR_Ngaro 65279 65797 238 + . . scaffold43146 WUBlastX LTR_Ngaro 65773 66123 132 + . . scaffold43146 WUBlastX LTR_Ngaro 65836 66105 145 + . . scaffold43146 GLEAN promoter 79112 80111 0.644637 + . ID=CGI_10009042; scaffold43146 GLEAN mRNA 80112 107835 0.644637 + . ID=CGI_10009042; scaffold43146 TRF Tandem_Repeat 90157 90264 171 + . . scaffold43146 TRF Tandem_Repeat 93272 93332 99 + . . scaffold43146 TRF Tandem_Repeat 99553 99654 161 + . . scaffold43146 TRF Tandem_Repeat 99553 99654 150 + . . scaffold43146 WUBlastX DNA_IS4EU 101062 101268 32 + . . scaffold43146 WUBlastX DNA_IS4EU 101285 101386 54 + . . scaffold43146 WUBlastX DNA_IS4EU 101388 102017 185 + . . scaffold43146 WUBlastX DNA_IS4EU 102025 102570 130 + . . scaffold43146 WUBlastX DNA_Kolobok-IS4 102864 103028 58 - . . scaffold43146 WUBlastX DNA_IS4EU 102864 103298 55 - . . scaffold43146 WUBlastX DNA_IS4EU 104079 104381 77 - . . scaffold43146 WUBlastX DNA_IS4EU 104139 104378 84 - . . scaffold43146 WUBlastX DNA_Kolobok-IS4 104181 104381 97 - . . scaffold43146 WUBlastX DNA_Kolobok-IS4 105006 105080 32 - . . scaffold43146 WUBlastX DNA_Kolobok-IS4 106067 106387 54 - . . scaffold43146 WUBlastX DNA_IS4EU 106607 106729 41 - . . scaffold43146 WUBlastX DNA_IS4EU 106834 107064 86 - . . scaffold43146 GLEAN promoter 112720 113719 0.801532 + . ID=CGI_10009043; scaffold43146 GLEAN mRNA 113720 114766 0.801532 + . ID=CGI_10009043; scaffold43146 GLEAN promoter 117043 118042 1 + . ID=CGI_10009044; scaffold43146 GLEAN mRNA 118043 121324 1 + . ID=CGI_10009044; scaffold43146 GLEAN promoter 123113 124112 1 + . ID=CGI_10009045; scaffold43146 GLEAN mRNA 124113 132908 1 + . ID=CGI_10009045; scaffold43146 TRF Tandem_Repeat 129089 129126 76 + . . scaffold43146 GLEAN mRNA 133859 138741 1 - . ID=CGI_10009046; scaffold43146 GLEAN promoter 138742 139741 1 - . ID=CGI_10009046; scaffold43146 TRF Tandem_Repeat 141547 141587 55 + . . scaffold43146 TRF Tandem_Repeat 175301 176135 1169 + . . scaffold43146 TRF Tandem_Repeat 178649 178830 228 + . . scaffold43146 TRF Tandem_Repeat 178649 178828 232 + . . scaffold43146 TRF Tandem_Repeat 178649 178828 232 + . . scaffold43146 TRF Tandem_Repeat 179537 179621 149 + . . scaffold43146 TRF Tandem_Repeat 187380 187407 56 + . . scaffold43146 TRF Tandem_Repeat 187748 187792 90 + . . scaffold43146 GLEAN mRNA 193579 199513 0.963019 - . ID=CGI_10009047; scaffold43146 WUBlastX LINE_L1 196277 196303 23 + . . scaffold43146 WUBlastX LINE_L1 196378 196467 21 + . . scaffold43146 WUBlastX LINE_L1-Tx1 196864 197766 218 + . . scaffold43146 WUBlastX LINE_L1-Tx1 196864 197607 221 + . . scaffold43146 WUBlastX LINE_L1-Tx1 197714 198019 50 + . . scaffold43146 GLEAN promoter 199514 200513 0.963019 - . ID=CGI_10009047; scaffold43146 TRF Tandem_Repeat 201054 201119 123 + . . scaffold43146 TRF Tandem_Repeat 203863 203925 126 + . . scaffold43146 GLEAN mRNA 205188 206008 0.963017 - . ID=CGI_10009048; scaffold43146 GLEAN promoter 206009 207008 0.963017 - . ID=CGI_10009048; scaffold43146 TRF Tandem_Repeat 216338 216648 446 + . . scaffold43146 WUBlastX LINE_L2 217768 218493 280 + . . scaffold43146 GLEAN mRNA 219888 222500 0.992505 - . ID=CGI_10009049; scaffold43146 GLEAN promoter 222501 223500 0.992505 - . ID=CGI_10009049; scaffold43150 GLEAN promoter 1 975 0.777732 + . ID=CGI_10009028; scaffold43150 GLEAN mRNA 976 1380 0.777732 + . ID=CGI_10009028; scaffold43150 GLEAN mRNA 5796 15496 0.999674 - . ID=CGI_10009029; scaffold43150 GLEAN promoter 15497 16496 0.999674 - . ID=CGI_10009029; scaffold43150 TRF Tandem_Repeat 21467 21512 92 + . . scaffold43150 GLEAN mRNA 22292 23602 0.481488 - . ID=CGI_10009030; scaffold43150 GLEAN promoter 23603 24602 0.481488 - . ID=CGI_10009030; scaffold43150 TRF Tandem_Repeat 45085 45111 54 + . . scaffold43150 WUBlastX DNA_Sola 53946 54629 183 - . . scaffold43150 WUBlastX DNA_Sola 54905 55015 55 - . . scaffold43150 WUBlastX DNA_Sola 54905 55054 44 - . . scaffold43150 WUBlastX DNA_Sola 54905 55141 21 - . . scaffold43150 WUBlastX DNA_Sola 55285 55503 125 - . . scaffold43150 WUBlastX DNA_Sola 55494 56072 116 - . . scaffold43150 WUBlastX DNA_Sola 55641 56072 165 - . . scaffold43150 WUBlastX DNA_Sola 56612 56857 108 - . . scaffold43150 WUBlastX DNA_Sola 56705 56944 32 - . . scaffold43150 WUBlastX DNA_Sola 57057 57635 253 - . . scaffold43150 TRF Tandem_Repeat 57944 58040 126 + . . scaffold43150 GLEAN promoter 71042 72041 0.999364 + . ID=CGI_10009031; scaffold43150 GLEAN mRNA 72042 89992 0.999364 + . ID=CGI_10009031; scaffold43150 TRF Tandem_Repeat 74054 74100 94 + . . scaffold43150 TRF Tandem_Repeat 76604 76659 112 + . . scaffold43150 TRF Tandem_Repeat 90376 90423 78 + . . scaffold43150 WUBlastX LINE_RTE-X 94433 94579 58 - . . scaffold43150 WUBlastX LINE_RTE-X 94472 94600 46 - . . scaffold43150 TRF Tandem_Repeat 95177 95229 106 + . . scaffold43150 TRF Tandem_Repeat 96450 96778 395 + . . scaffold43150 TRF Tandem_Repeat 98323 98493 167 + . . scaffold43150 TRF Tandem_Repeat 98325 98486 164 + . . scaffold43150 TRF Tandem_Repeat 99477 99502 52 + . . scaffold43150 GLEAN mRNA 101388 111532 0.998791 - . ID=CGI_10009032; scaffold43150 GLEAN promoter 103548 104547 1 + . ID=CGI_10009033; scaffold43150 TRF Tandem_Repeat 103613 103674 67 + . . scaffold43150 TRF Tandem_Repeat 103616 103654 53 + . . scaffold43150 GLEAN mRNA 104548 105093 1 + . ID=CGI_10009033; scaffold43150 WUBlastX LINE_RTE-X 105065 105421 217 + . . scaffold43150 WUBlastX LINE_RTE-X 105479 107569 1253 + . . scaffold43150 WUBlastX LINE_L1 107090 107659 48 + . . scaffold43150 WUBlastX LINE_CR1 107545 107688 29 + . . scaffold43150 WUBlastX LINE_RTE-BovB 107835 108650 142 + . . scaffold43150 WUBlastX LINE_RTE-X 107964 109241 872 + . . scaffold43150 WUBlastX LINE_RTE-X 108801 109400 135 + . . scaffold43150 GLEAN promoter 111533 112532 0.998791 - . ID=CGI_10009032; scaffold43150 GLEAN mRNA 113070 115441 1 - . ID=CGI_10009034; scaffold43150 GLEAN promoter 115442 116441 1 - . ID=CGI_10009034; scaffold43150 TRF Tandem_Repeat 115982 116061 160 + . . scaffold43150 TRF Tandem_Repeat 116172 116212 57 + . . scaffold43150 GLEAN promoter 120679 121678 1 + . ID=CGI_10009035; scaffold43150 GLEAN mRNA 121679 138901 1 + . ID=CGI_10009035; scaffold43150 WUBlastX LINE_L1 132133 132936 43 + . . scaffold43150 WUBlastX LINE_L2 132349 133071 129 + . . scaffold43150 WUBlastX LINE_L1-Tx1 133382 137185 1935 + . . scaffold43150 GLEAN promoter 138459 139458 1 + . ID=CGI_10009036; scaffold43150 TRF Tandem_Repeat 139168 139369 113 + . . scaffold43150 TRF Tandem_Repeat 139247 139449 271 + . . scaffold43150 GLEAN mRNA 139459 140156 1 + . ID=CGI_10009036; scaffold43150 TRF Tandem_Repeat 140216 140380 215 + . . scaffold43150 GLEAN mRNA 142574 144612 0.999414 - . ID=CGI_10009037; scaffold43150 GLEAN promoter 144613 145612 0.999414 - . ID=CGI_10009037; scaffold43150 TRF Tandem_Repeat 151422 151460 60 + . . scaffold43150 TRF Tandem_Repeat 151425 151460 54 + . . scaffold43150 GLEAN mRNA 152179 161050 0.994235 - . ID=CGI_10009038; scaffold43150 GLEAN promoter 161051 162050 0.994235 - . ID=CGI_10009038; scaffold43150 GLEAN mRNA 161218 161646 1 - . ID=CGI_10009039; scaffold43150 GLEAN promoter 161647 162646 1 - . ID=CGI_10009039; scaffold43150 GLEAN mRNA 162035 179423 0.544852 - . ID=CGI_10009040; scaffold43150 TRF Tandem_Repeat 167137 167182 92 + . . scaffold43150 TRF Tandem_Repeat 174285 174463 331 + . . scaffold43150 GLEAN promoter 179424 180423 0.544852 - . ID=CGI_10009040; scaffold43150 TRF Tandem_Repeat 179938 180050 75 + . . scaffold43150 GLEAN promoter 180805 181804 0.998278 + . ID=CGI_10009041; scaffold43150 GLEAN mRNA 181805 218640 0.998278 + . ID=CGI_10009041; scaffold43150 TRF Tandem_Repeat 187279 187345 125 + . . scaffold43150 TRF Tandem_Repeat 199351 199384 68 + . . scaffold43150 TRF Tandem_Repeat 221620 223202 2351 + . . scaffold43150 TRF Tandem_Repeat 221699 223206 2273 + . . scaffold43170 GLEAN mRNA 562 49035 0.0513125 - . ID=CGI_10009100; scaffold43170 WUBlastX LINE_RTE-BovB 28705 29094 280 + . . scaffold43170 WUBlastX LINE_RTE-BovB 29566 29808 113 + . . scaffold43170 TRF Tandem_Repeat 44407 45212 933 + . . scaffold43170 GLEAN promoter 49036 50035 0.0513125 - . ID=CGI_10009100; scaffold43170 TRF Tandem_Repeat 49538 49678 165 + . . scaffold43170 TRF Tandem_Repeat 49699 49765 89 + . . scaffold43170 TRF Tandem_Repeat 60414 60454 82 + . . scaffold43170 TRF Tandem_Repeat 62048 62202 211 + . . scaffold43170 GLEAN mRNA 64061 76823 0.999976 - . ID=CGI_10009101; scaffold43170 TRF Tandem_Repeat 70963 71020 57 + . . scaffold43170 GLEAN promoter 76824 77823 0.999976 - . ID=CGI_10009101; scaffold43170 WUBlastX LINE_CR1 79666 80076 39 + . . scaffold43170 WUBlastX LINE_CR1 79732 81360 773 + . . scaffold43170 GLEAN mRNA 109769 118628 0.999676 - . ID=CGI_10009102; scaffold43170 GLEAN promoter 113474 114473 0.997994 + . ID=CGI_10009103; scaffold43170 GLEAN mRNA 114474 133457 0.997994 + . ID=CGI_10009103; scaffold43170 TRF Tandem_Repeat 115769 115797 58 + . . scaffold43170 WUBlastX DNA_Zator 116007 116393 86 - . . scaffold43170 WUBlastX DNA_Zator 116010 116609 67 - . . scaffold43170 WUBlastX DNA_Zator 116499 118718 922 - . . scaffold43170 GLEAN promoter 118629 119628 0.999676 - . ID=CGI_10009102; scaffold43170 WUBlastX LINE_L1-Tx1 130053 131423 334 + . . scaffold43170 TRF Tandem_Repeat 136853 136889 74 + . . scaffold43170 TRF Tandem_Repeat 141084 141181 99 + . . scaffold43170 GLEAN promoter 141766 142765 0.745017 + . ID=CGI_10009104; scaffold43170 GLEAN mRNA 142766 193820 0.745017 + . ID=CGI_10009104; scaffold43170 TRF Tandem_Repeat 159363 159448 104 + . . scaffold43170 TRF Tandem_Repeat 159363 159448 106 + . . scaffold43170 TRF Tandem_Repeat 176001 176044 70 + . . scaffold43170 TRF Tandem_Repeat 176014 176047 50 + . . scaffold43170 GLEAN promoter 201607 202606 0.996819 + . ID=CGI_10009105; scaffold43170 GLEAN mRNA 202607 220798 0.996819 + . ID=CGI_10009105; scaffold43170 TRF Tandem_Repeat 204603 204656 108 + . . scaffold43170 TRF Tandem_Repeat 209028 209107 115 + . . scaffold43170 TRF Tandem_Repeat 209028 209107 115 + . . scaffold43170 GLEAN mRNA 222909 223577 1 - . ID=CGI_10009106; scaffold43170 GLEAN promoter 223578 224577 1 - . ID=CGI_10009106; scaffold43182 TRF Tandem_Repeat 7831 7906 118 + . . scaffold43182 TRF Tandem_Repeat 7955 7987 66 + . . scaffold43182 GLEAN mRNA 13799 14668 0.999675 - . ID=CGI_10009196; scaffold43182 GLEAN promoter 14669 15668 0.999675 - . ID=CGI_10009196; scaffold43182 WUBlastX LINE_L2 15904 16095 63 - . . scaffold43182 WUBlastX LINE_L2 15904 16044 77 - . . scaffold43182 TRF Tandem_Repeat 18084 18110 54 + . . scaffold43182 GLEAN promoter 24821 25820 0.795977 + . ID=CGI_10009197; scaffold43182 GLEAN mRNA 25821 44165 0.795977 + . ID=CGI_10009197; scaffold43182 TRF Tandem_Repeat 32134 32174 82 + . . scaffold43182 WUBlastX DNA_Sola 38000 38275 20 - . . scaffold43182 WUBlastX DNA_Sola 38508 38978 30 - . . scaffold43182 TRF Tandem_Repeat 47212 48543 1552 + . . scaffold43182 WUBlastX LINE_L1 50636 50962 55 - . . scaffold43182 WUBlastX LINE_L1 50747 51307 105 - . . scaffold43182 WUBlastX LINE_L1-Tx1 51897 51977 38 - . . scaffold43182 WUBlastX LINE_L1 51906 51959 45 - . . scaffold43182 WUBlastX LINE_L1 51956 52060 20 - . . scaffold43182 WUBlastX LTR_DIRS 55926 56429 241 - . . scaffold43182 TRF Tandem_Repeat 56455 56553 81 + . . scaffold43182 TRF Tandem_Repeat 56471 56593 158 + . . scaffold43182 WUBlastX LTR_DIRS 57417 57725 64 - . . scaffold43182 WUBlastX LTR_DIRS 57709 59004 720 - . . scaffold43182 WUBlastX LTR_DIRS 59013 59642 139 - . . scaffold43182 WUBlastX LTR_DIRS 59685 60392 219 - . . scaffold43182 WUBlastX LTR_DIRS 59883 60551 135 - . . scaffold43182 WUBlastX LTR_DIRS 60772 60894 41 - . . scaffold43182 GLEAN mRNA 65944 73055 0.562429 - . ID=CGI_10009198; scaffold43182 TRF Tandem_Repeat 67448 68250 1112 + . . scaffold43182 TRF Tandem_Repeat 72815 72855 82 + . . scaffold43182 GLEAN promoter 73056 74055 0.562429 - . ID=CGI_10009198; scaffold43182 TRF Tandem_Repeat 73806 73836 62 + . . scaffold43182 GLEAN promoter 84537 85536 0.777756 + . ID=CGI_10009199; scaffold43182 GLEAN mRNA 85537 93359 0.777756 + . ID=CGI_10009199; scaffold43182 TRF Tandem_Repeat 86677 86721 90 + . . scaffold43182 WUBlastX LTR_DIRS 94814 94951 68 + . . scaffold43182 GLEAN promoter 96443 97442 0.800679 + . ID=CGI_10009200; scaffold43182 GLEAN mRNA 97443 102816 0.800679 + . ID=CGI_10009200; scaffold43182 WUBlastX LTR_Ngaro 98620 98982 62 - . . scaffold43182 WUBlastX DNA_TcMar-Tc1 99596 99808 34 + . . scaffold43182 WUBlastX DNA_TcMar-Tc1 99638 99811 40 + . . scaffold43182 WUBlastX DNA_TcMar-Tc1 99848 100144 65 + . . scaffold43182 GLEAN mRNA 103221 129206 0.72893 - . ID=CGI_10009201; scaffold43182 TRF Tandem_Repeat 110832 110934 57 + . . scaffold43182 WUBlastX LINE_L2 111958 112803 110 - . . scaffold43182 GLEAN promoter 129207 130206 0.72893 - . ID=CGI_10009201; scaffold43182 WUBlastX LTR_Gypsy 129381 129950 36 + . . scaffold43182 WUBlastX LTR_Gypsy 129396 129827 81 + . . scaffold43182 WUBlastX LTR_Gypsy 129552 129878 40 + . . scaffold43182 WUBlastX LTR_Gypsy 129968 130834 99 + . . scaffold43182 WUBlastX LTR_Gypsy 130217 130717 104 + . . scaffold43182 WUBlastX LTR_Gypsy 131286 131405 21 + . . scaffold43182 WUBlastX DNA_hAT-Ac 132833 133048 92 + . . scaffold43182 WUBlastX DNA_hAT-Ac 132833 133123 62 + . . scaffold43182 TRF Tandem_Repeat 138409 138469 52 + . . scaffold43182 TRF Tandem_Repeat 138412 138472 65 + . . scaffold43182 TRF Tandem_Repeat 139950 140024 62 + . . scaffold43182 WUBlastX LTR_DIRS 141231 141371 70 - . . scaffold43182 WUBlastX LTR_ERVK 142886 142945 20 - . . scaffold43182 WUBlastX LTR_DIRS 142898 143158 83 - . . scaffold43182 WUBlastX LTR_DIRS 143154 143861 407 - . . scaffold43182 WUBlastX LTR_DIRS 144018 144089 28 - . . scaffold43182 WUBlastX LTR_DIRS 144703 145071 165 - . . scaffold43182 WUBlastX DNA_Kolobok 147843 148010 84 + . . scaffold43182 GLEAN mRNA 148403 191043 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX DNA_Kolobok 148412 148804 69 - . . scaffold43182 WUBlastX DNA_Kolobok 148651 148824 76 - . . scaffold43182 WUBlastX DNA_Kolobok 148862 149101 74 - . . scaffold43182 GLEAN promoter 164665 165664 0.991141 + . ID=CGI_10009204; scaffold43182 GLEAN mRNA 165665 165901 0.991141 + . ID=CGI_10009204; scaffold43182 WUBlastX LTR_Gypsy 166179 166463 24 + . . scaffold43182 WUBlastX LTR_Gypsy 166266 166469 41 + . . scaffold43182 WUBlastX LTR_Gypsy 166299 166466 51 + . . scaffold43182 WUBlastX LTR_Gypsy 166335 166466 52 + . . scaffold43182 WUBlastX LTR_ERV1 166389 166472 55 + . . scaffold43182 WUBlastX LTR_Gypsy 166486 166776 111 + . . scaffold43182 WUBlastX LTR_Gypsy-Cigr 166546 166821 65 + . . scaffold43182 WUBlastX LTR_Gypsy 167708 167899 32 + . . scaffold43182 WUBlastX LTR_Gypsy-Gmr1 167949 168011 26 + . . scaffold43182 WUBlastX LTR_Gypsy 167988 168020 25 + . . scaffold43182 WUBlastX LTR_Gypsy-Gmr1 168273 168383 26 + . . scaffold43182 WUBlastX LTR_Gypsy 168404 168475 30 + . . scaffold43182 WUBlastX LTR_Gypsy 169423 169950 145 + . . scaffold43182 WUBlastX LTR_Gypsy 169423 170115 137 + . . scaffold43182 WUBlastX LTR_Gypsy 170172 170225 25 + . . scaffold43182 WUBlastX LINE_L1-Tx1 172153 172671 140 - . . scaffold43182 TRF Tandem_Repeat 178654 178706 106 + . . scaffold43182 TRF Tandem_Repeat 182534 182601 100 + . . scaffold43182 TRF Tandem_Repeat 185331 185381 102 + . . scaffold43182 WUBlastX DNA_En-Spm 187518 187877 64 + . . scaffold43182 WUBlastX DNA_En-Spm 187865 189112 570 + . . scaffold43182 WUBlastX DNA_En-Spm 187889 189517 418 + . . scaffold43182 GLEAN promoter 189018 190017 0.999988 + . ID=CGI_10009205; scaffold43182 GLEAN mRNA 190018 191932 0.999988 + . ID=CGI_10009205; scaffold43182 GLEAN promoter 191044 192043 0.49983 - . ID=CGI_10009203; scaffold43182 WUBlastX DNA_MuDR 192282 192875 191 + . . scaffold43182 TRF Tandem_Repeat 195245 195278 50 + . . scaffold43182 TRF Tandem_Repeat 195248 195282 61 + . . scaffold43182 TRF Tandem_Repeat 196016 196091 116 + . . scaffold43182 TRF Tandem_Repeat 196391 196417 54 + . . scaffold43182 WUBlastX LTR_Gypsy 197595 197837 67 + . . scaffold43182 WUBlastX LTR_Gypsy-Cigr 197640 197837 97 + . . scaffold43182 WUBlastX LTR_Gypsy 197670 197870 63 + . . scaffold43182 TRF Tandem_Repeat 206075 206112 76 + . . scaffold43182 TRF Tandem_Repeat 210596 210676 64 + . . scaffold43182 TRF Tandem_Repeat 210605 210676 72 + . . scaffold43182 TRF Tandem_Repeat 219672 219717 92 + . . scaffold43182 GLEAN promoter 221171 222170 1 + . ID=CGI_10009206; scaffold43182 GLEAN mRNA 222171 222599 1 + . ID=CGI_10009206; scaffold43182 GLEAN mRNA 222846 224510 1 - . ID=CGI_10009207; scaffold43182 GLEAN promoter 224511 225510 1 - . ID=CGI_10009207; scaffold43182 TRF Tandem_Repeat 226101 226142 84 + . . scaffold43182 TRF Tandem_Repeat 226142 226184 50 + . . scaffold43182 TRF Tandem_Repeat 226204 226314 150 + . . scaffold43182 TRF Tandem_Repeat 226314 226353 71 + . . scaffold43184 WUBlastX LINE_RTE-X 5360 5644 34 + . . scaffold43184 WUBlastX LINE_RTE-BovB 5435 5641 53 + . . scaffold43184 WUBlastX LINE_RTE-BovB 5477 5644 176 + . . scaffold43184 WUBlastX LINE_RTE-BovB 5646 6062 247 + . . scaffold43184 WUBlastX LINE_RTE-BovB 6074 6511 208 + . . scaffold43184 WUBlastX LINE_RTE-BovB 6499 6621 34 + . . scaffold43184 TRF Tandem_Repeat 10559 10664 151 + . . scaffold43184 GLEAN mRNA 15223 18789 0.993907 - . ID=CGI_10009107; scaffold43184 GLEAN promoter 18790 19789 0.993907 - . ID=CGI_10009107; scaffold43184 TRF Tandem_Repeat 20737 20809 146 + . . scaffold43184 TRF Tandem_Repeat 23279 23328 100 + . . scaffold43184 GLEAN mRNA 25355 27725 0.99883 - . ID=CGI_10009108; scaffold43184 GLEAN promoter 27726 28725 0.99883 - . ID=CGI_10009108; scaffold43184 TRF Tandem_Repeat 30531 30671 57 + . . scaffold43184 TRF Tandem_Repeat 30546 30731 148 + . . scaffold43184 GLEAN promoter 30758 31757 0.999854 + . ID=CGI_10009109; scaffold43184 GLEAN mRNA 31758 34053 0.999854 + . ID=CGI_10009109; scaffold43184 GLEAN promoter 33372 34371 1 + . ID=CGI_10009110; scaffold43184 GLEAN mRNA 34372 36648 1 + . ID=CGI_10009110; scaffold43184 GLEAN mRNA 40370 51198 0.796776 - . ID=CGI_10009111; scaffold43184 GLEAN promoter 51199 52198 0.796776 - . ID=CGI_10009111; scaffold43184 TRF Tandem_Repeat 60846 60896 102 + . . scaffold43184 TRF Tandem_Repeat 61770 61795 52 + . . scaffold43184 GLEAN promoter 67911 68910 0.889887 + . ID=CGI_10009112; scaffold43184 GLEAN mRNA 68911 91926 0.889887 + . ID=CGI_10009112; scaffold43184 TRF Tandem_Repeat 72964 73031 61 + . . scaffold43184 TRF Tandem_Repeat 88723 88886 119 + . . scaffold43184 GLEAN promoter 92204 93203 1 + . ID=CGI_10009113; scaffold43184 GLEAN mRNA 93204 94886 1 + . ID=CGI_10009113; scaffold43184 TRF Tandem_Repeat 108228 108294 134 + . . scaffold43184 GLEAN mRNA 115358 122634 0.590542 - . ID=CGI_10009114; scaffold43184 GLEAN promoter 117296 118295 0.841405 + . ID=CGI_10009115; scaffold43184 GLEAN mRNA 118296 129580 0.841405 + . ID=CGI_10009115; scaffold43184 GLEAN promoter 122635 123634 0.590542 - . ID=CGI_10009114; scaffold43184 GLEAN mRNA 129664 149008 0.58027 - . ID=CGI_10009116; scaffold43184 GLEAN promoter 149009 150008 0.58027 - . ID=CGI_10009116; scaffold43184 TRF Tandem_Repeat 149917 149978 72 + . . scaffold43184 TRF Tandem_Repeat 156663 156703 75 + . . scaffold43184 TRF Tandem_Repeat 160317 160625 410 + . . scaffold43184 TRF Tandem_Repeat 160317 160625 414 + . . scaffold43184 GLEAN mRNA 172157 193737 0.650416 - . ID=CGI_10009117; scaffold43184 TRF Tandem_Repeat 188494 188561 64 + . . scaffold43184 GLEAN promoter 193738 194737 0.650416 - . ID=CGI_10009117; scaffold43184 WUBlastX LINE_RTE-X 196092 196394 101 - . . scaffold43184 WUBlastX LINE_RTE-X 196182 196442 60 - . . scaffold43184 WUBlastX LINE_RTE-X 196579 196782 55 - . . scaffold43184 TRF Tandem_Repeat 196910 197000 128 + . . scaffold43184 TRF Tandem_Repeat 197085 197179 82 + . . scaffold43184 TRF Tandem_Repeat 197249 197422 165 + . . scaffold43184 TRF Tandem_Repeat 197719 197765 94 + . . scaffold43184 TRF Tandem_Repeat 203214 203285 128 + . . scaffold43184 TRF Tandem_Repeat 213584 214326 987 + . . scaffold43184 TRF Tandem_Repeat 218177 218224 60 + . . scaffold43184 TRF Tandem_Repeat 218182 218231 82 + . . scaffold43184 GLEAN promoter 220190 221189 0.702262 + . ID=CGI_10009118; scaffold43184 GLEAN mRNA 221190 225992 0.702262 + . ID=CGI_10009118; scaffold43194 TRF Tandem_Repeat 1483 1685 291 + . . scaffold43194 WUBlastX DNA_IS4EU 4194 4301 20 + . . scaffold43194 WUBlastX DNA_IS4EU 5100 5642 267 + . . scaffold43194 WUBlastX DNA_Kolobok-IS4 5890 6114 44 - . . scaffold43194 WUBlastX DNA_Kolobok-IS4 6313 6447 39 - . . scaffold43194 GLEAN mRNA 7444 18170 0.650343 - . ID=CGI_10009247; scaffold43194 GLEAN promoter 18171 19170 0.650343 - . ID=CGI_10009247; scaffold43194 TRF Tandem_Repeat 31953 32002 100 + . . scaffold43194 GLEAN mRNA 32939 34972 0.784061 - . ID=CGI_10009248; scaffold43194 GLEAN promoter 34973 35972 0.784061 - . ID=CGI_10009248; scaffold43194 TRF Tandem_Repeat 36746 36771 52 + . . scaffold43194 TRF Tandem_Repeat 36916 36962 94 + . . scaffold43194 GLEAN promoter 36973 37972 0.999675 + . ID=CGI_10009249; scaffold43194 GLEAN mRNA 37973 46684 0.999675 + . ID=CGI_10009249; scaffold43194 TRF Tandem_Repeat 40303 40464 279 + . . scaffold43194 GLEAN promoter 50726 51725 0.999675 + . ID=CGI_10009250; scaffold43194 GLEAN mRNA 51726 59069 0.999675 + . ID=CGI_10009250; scaffold43194 TRF Tandem_Repeat 53395 53431 65 + . . scaffold43194 GLEAN mRNA 61086 62840 0.999967 - . ID=CGI_10009251; scaffold43194 GLEAN promoter 62841 63840 0.999967 - . ID=CGI_10009251; scaffold43194 TRF Tandem_Repeat 67690 67714 50 + . . scaffold43194 TRF Tandem_Repeat 68241 68266 52 + . . scaffold43194 TRF Tandem_Repeat 70840 70881 66 + . . scaffold43194 GLEAN mRNA 71036 73448 0.999966 - . ID=CGI_10009252; scaffold43194 TRF Tandem_Repeat 72835 72886 104 + . . scaffold43194 GLEAN promoter 73449 74448 0.999966 - . ID=CGI_10009252; scaffold43194 TRF Tandem_Repeat 74427 74452 52 + . . scaffold43194 TRF Tandem_Repeat 74531 74557 54 + . . scaffold43194 GLEAN mRNA 84685 88482 0.615405 - . ID=CGI_10009253; scaffold43194 GLEAN promoter 88483 89482 0.615405 - . ID=CGI_10009253; scaffold43194 GLEAN mRNA 106832 116141 0.999975 - . ID=CGI_10009254; scaffold43194 TRF Tandem_Repeat 114134 114201 120 + . . scaffold43194 TRF Tandem_Repeat 114493 114541 98 + . . scaffold43194 GLEAN promoter 116142 117141 0.999975 - . ID=CGI_10009254; scaffold43194 TRF Tandem_Repeat 119919 120001 112 + . . scaffold43194 TRF Tandem_Repeat 126308 127270 941 + . . scaffold43194 GLEAN mRNA 129163 142020 0.334247 - . ID=CGI_10009255; scaffold43194 TRF Tandem_Repeat 130738 130777 80 + . . scaffold43194 TRF Tandem_Repeat 137005 137101 160 + . . scaffold43194 TRF Tandem_Repeat 137007 137093 56 + . . scaffold43194 TRF Tandem_Repeat 138285 138330 92 + . . scaffold43194 TRF Tandem_Repeat 140679 140718 62 + . . scaffold43194 GLEAN promoter 142021 143020 0.334247 - . ID=CGI_10009255; scaffold43194 GLEAN promoter 144850 145849 1 + . ID=CGI_10009256; scaffold43194 GLEAN mRNA 145850 158454 1 + . ID=CGI_10009256; scaffold43194 TRF Tandem_Repeat 147085 147173 72 + . . scaffold43194 TRF Tandem_Repeat 148767 148821 110 + . . scaffold43194 TRF Tandem_Repeat 149603 149637 70 + . . scaffold43194 TRF Tandem_Repeat 156483 156527 90 + . . scaffold43194 TRF Tandem_Repeat 162484 162533 100 + . . scaffold43194 GLEAN promoter 173335 174334 0.517237 + . ID=CGI_10009257; scaffold43194 GLEAN mRNA 174335 191447 0.517237 + . ID=CGI_10009257; scaffold43194 TRF Tandem_Repeat 175759 175861 206 + . . scaffold43194 TRF Tandem_Repeat 179921 179950 60 + . . scaffold43194 GLEAN mRNA 194093 198159 0.999618 - . ID=CGI_10009258; scaffold43194 TRF Tandem_Repeat 194414 194441 56 + . . scaffold43194 GLEAN promoter 198160 199159 0.999618 - . ID=CGI_10009258; scaffold43194 GLEAN mRNA 199573 204602 0.95808 - . ID=CGI_10009259; scaffold43194 GLEAN promoter 204603 205602 0.95808 - . ID=CGI_10009259; scaffold43194 WUBlastX LINE_RTE-X 205999 207528 606 + . . scaffold43194 WUBlastX LTR_Ngaro 212648 213025 60 + . . scaffold43194 WUBlastX LTR_Ngaro 212801 213025 78 + . . scaffold43194 WUBlastX LTR_Ngaro 212991 213182 41 + . . scaffold43194 WUBlastX LTR_Ngaro 213223 213390 99 + . . scaffold43194 WUBlastX LTR_Gypsy 215300 216859 1169 - . . scaffold43194 WUBlastX LTR_Gypsy-Cigr 216868 217914 883 - . . scaffold43194 TRF Tandem_Repeat 227101 227125 50 + . . scaffold432 TRF Tandem_Repeat 1891 1931 82 + . . scaffold432 GLEAN promoter 7906 8905 0.958106 + . ID=CGI_10023076; scaffold432 GLEAN mRNA 8906 38904 0.958106 + . ID=CGI_10023076; scaffold432 TRF Tandem_Repeat 14221 14368 111 + . . scaffold432 TRF Tandem_Repeat 14225 14368 91 + . . scaffold432 TRF Tandem_Repeat 16905 17146 466 + . . scaffold432 TRF Tandem_Repeat 16913 17108 95 + . . scaffold432 TRF Tandem_Repeat 16937 17172 172 + . . scaffold432 TRF Tandem_Repeat 17152 17277 173 + . . scaffold432 TRF Tandem_Repeat 31690 31787 162 + . . scaffold432 TRF Tandem_Repeat 31704 31761 61 + . . scaffold432 TRF Tandem_Repeat 45401 45573 256 + . . scaffold432 GLEAN mRNA 46001 53127 0.980522 - . ID=CGI_10023077; scaffold432 TRF Tandem_Repeat 48795 48838 88 + . . scaffold432 GLEAN promoter 53128 54127 0.980522 - . ID=CGI_10023077; scaffold432 GLEAN mRNA 55244 70664 0.608757 - . ID=CGI_10023078; scaffold432 GLEAN promoter 70665 71664 0.608757 - . ID=CGI_10023078; scaffold432 GLEAN mRNA 72070 75182 1 - . ID=CGI_10023079; scaffold432 GLEAN promoter 75183 76182 1 - . ID=CGI_10023079; scaffold432 GLEAN promoter 77356 78355 1 + . ID=CGI_10023080; scaffold432 GLEAN mRNA 78356 78679 1 + . ID=CGI_10023080; scaffold432 TRF Tandem_Repeat 79590 79706 123 + . . scaffold432 TRF Tandem_Repeat 79599 79668 63 + . . scaffold432 TRF Tandem_Repeat 79603 79696 106 + . . scaffold432 WUBlastX LINE_RTE-X 82727 83086 134 + . . scaffold432 WUBlastX LINE_RTE-X 82853 83200 97 + . . scaffold432 TRF Tandem_Repeat 86316 87075 460 + . . scaffold432 TRF Tandem_Repeat 86937 87076 115 + . . scaffold432 TRF Tandem_Repeat 87881 89888 2699 + . . scaffold432 GLEAN promoter 96017 97016 0.937944 + . ID=CGI_10023081; scaffold432 TRF Tandem_Repeat 96344 96395 104 + . . scaffold432 GLEAN mRNA 97017 99124 0.937944 + . ID=CGI_10023081; scaffold432 TRF Tandem_Repeat 104108 104150 61 + . . scaffold432 TRF Tandem_Repeat 104749 104989 405 + . . scaffold432 TRF Tandem_Repeat 104749 104989 405 + . . scaffold432 TRF Tandem_Repeat 104749 104989 405 + . . scaffold432 GLEAN promoter 107312 108311 1 + . ID=CGI_10023082; scaffold432 GLEAN mRNA 108312 110758 1 + . ID=CGI_10023082; scaffold432 TRF Tandem_Repeat 116294 116394 114 + . . scaffold432 TRF Tandem_Repeat 116541 116698 122 + . . scaffold432 TRF Tandem_Repeat 116698 116799 96 + . . scaffold432 GLEAN mRNA 120329 121486 1 - . ID=CGI_10023083; scaffold432 GLEAN promoter 121487 122486 1 - . ID=CGI_10023083; scaffold432 TRF Tandem_Repeat 123431 123468 76 + . . scaffold432 TRF Tandem_Repeat 131737 131861 128 + . . scaffold432 WUBlastX LINE_RTE-X 133060 133179 30 + . . scaffold432 WUBlastX LINE_RTE-X 133202 133372 25 + . . scaffold432 TRF Tandem_Repeat 133940 133994 110 + . . scaffold432 GLEAN mRNA 143474 162297 0.999027 - . ID=CGI_10023084; scaffold432 GLEAN promoter 162298 163297 0.999027 - . ID=CGI_10023084; scaffold432 TRF Tandem_Repeat 171984 172063 79 + . . scaffold432 TRF Tandem_Repeat 171985 172072 113 + . . scaffold432 TRF Tandem_Repeat 171989 172072 141 + . . scaffold432 TRF Tandem_Repeat 171997 172071 87 + . . scaffold432 GLEAN mRNA 178499 191599 0.999998 - . ID=CGI_10023085; scaffold432 TRF Tandem_Repeat 178983 179309 146 + . . scaffold432 TRF Tandem_Repeat 178983 179324 270 + . . scaffold432 TRF Tandem_Repeat 179375 179504 89 + . . scaffold432 TRF Tandem_Repeat 179565 179766 296 + . . scaffold432 TRF Tandem_Repeat 183546 184074 640 + . . scaffold432 TRF Tandem_Repeat 183546 184074 592 + . . scaffold432 TRF Tandem_Repeat 184141 184296 303 + . . scaffold432 TRF Tandem_Repeat 186527 187233 1258 + . . scaffold432 TRF Tandem_Repeat 188956 189450 740 + . . scaffold432 GLEAN promoter 191600 192599 0.999998 - . ID=CGI_10023085; scaffold432 GLEAN promoter 192837 193836 1 + . ID=CGI_10023086; scaffold432 GLEAN mRNA 193837 195374 1 + . ID=CGI_10023086; scaffold432 TRF Tandem_Repeat 194527 194555 51 + . . scaffold432 TRF Tandem_Repeat 195730 195770 55 + . . scaffold432 TRF Tandem_Repeat 195731 195770 55 + . . scaffold432 GLEAN mRNA 195769 205015 0.999676 - . ID=CGI_10023087; scaffold432 GLEAN promoter 205016 206015 0.999676 - . ID=CGI_10023087; scaffold432 TRF Tandem_Repeat 205663 205694 64 + . . scaffold432 TRF Tandem_Repeat 205694 205728 70 + . . scaffold432 GLEAN mRNA 208932 210918 1 - . ID=CGI_10023088; scaffold432 GLEAN promoter 210919 211918 1 - . ID=CGI_10023088; scaffold432 GLEAN mRNA 214388 220125 0.994814 - . ID=CGI_10023089; scaffold432 TRF Tandem_Repeat 215807 215850 88 + . . scaffold432 GLEAN promoter 220126 221125 0.994814 - . ID=CGI_10023089; scaffold432 GLEAN promoter 224683 225682 0.651135 + . ID=CGI_10023090; scaffold432 GLEAN mRNA 225683 226253 0.651135 + . ID=CGI_10023090; scaffold432 TRF Tandem_Repeat 229315 229937 886 + . . scaffold432 GLEAN promoter 234322 235321 0.999925 + . ID=CGI_10023091; scaffold432 GLEAN mRNA 235322 257919 0.999925 + . ID=CGI_10023091; scaffold432 TRF Tandem_Repeat 239393 239693 433 + . . scaffold432 TRF Tandem_Repeat 241430 241664 328 + . . scaffold432 WUBlastX LINE_L2 244285 245301 66 - . . scaffold432 WUBlastX LINE_L2 244495 245283 350 - . . scaffold432 WUBlastX LINE_L2 245315 247345 784 - . . scaffold432 TRF Tandem_Repeat 252921 253064 139 + . . scaffold432 TRF Tandem_Repeat 254590 254733 243 + . . scaffold432 TRF Tandem_Repeat 256579 256825 433 + . . scaffold432 TRF Tandem_Repeat 264161 264828 918 + . . scaffold432 TRF Tandem_Repeat 265203 265858 838 + . . scaffold432 TRF Tandem_Repeat 267741 267781 82 + . . scaffold432 GLEAN promoter 268225 269224 0.999999 + . ID=CGI_10023092; scaffold432 GLEAN mRNA 269225 272158 0.999999 + . ID=CGI_10023092; scaffold432 GLEAN promoter 277358 278357 1 + . ID=CGI_10023093; scaffold432 GLEAN mRNA 278358 280835 1 + . ID=CGI_10023093; scaffold432 GLEAN promoter 285618 286617 1 + . ID=CGI_10023094; scaffold432 GLEAN mRNA 286618 288395 1 + . ID=CGI_10023094; scaffold432 TRF Tandem_Repeat 295833 296035 298 + . . scaffold432 TRF Tandem_Repeat 299418 299554 121 + . . scaffold432 TRF Tandem_Repeat 299418 299513 131 + . . scaffold432 TRF Tandem_Repeat 299546 299681 96 + . . scaffold432 TRF Tandem_Repeat 299765 299851 108 + . . scaffold432 TRF Tandem_Repeat 300093 300288 85 + . . scaffold432 TRF Tandem_Repeat 300320 300451 106 + . . scaffold432 GLEAN promoter 301227 302226 0.999922 + . ID=CGI_10023095; scaffold432 GLEAN mRNA 302227 309702 0.999922 + . ID=CGI_10023095; scaffold432 TRF Tandem_Repeat 308705 308783 62 + . . scaffold432 GLEAN promoter 310290 311289 0.468489 + . ID=CGI_10023096; scaffold432 GLEAN mRNA 311290 323662 0.468489 + . ID=CGI_10023096; scaffold432 TRF Tandem_Repeat 313470 313948 861 + . . scaffold432 TRF Tandem_Repeat 316661 317046 301 + . . scaffold432 TRF Tandem_Repeat 316661 317044 176 + . . scaffold432 TRF Tandem_Repeat 316679 317048 208 + . . scaffold432 TRF Tandem_Repeat 316683 317067 83 + . . scaffold432 TRF Tandem_Repeat 316714 317065 359 + . . scaffold432 TRF Tandem_Repeat 316829 317070 216 + . . scaffold432 TRF Tandem_Repeat 318575 318681 133 + . . scaffold432 TRF Tandem_Repeat 321543 322287 519 + . . scaffold432 TRF Tandem_Repeat 321543 322312 649 + . . scaffold432 TRF Tandem_Repeat 321551 322291 635 + . . scaffold432 WUBlastX DNA_TcMar-Tc1 324551 324850 164 - . . scaffold432 WUBlastX DNA_TcMar-Tc1 325419 325718 164 - . . scaffold432 WUBlastX DNA_TcMar-Tc1 325998 326663 67 - . . scaffold432 WUBlastX DNA_TcMar-Tc1 325998 326546 117 - . . scaffold432 WUBlastX DNA_TcMar-Tc1 327230 327406 20 - . . scaffold432 TRF Tandem_Repeat 327524 327635 152 + . . scaffold432 TRF Tandem_Repeat 327879 328859 1115 + . . scaffold432 WUBlastX DNA_TcMar-Marin 329634 329903 55 - . . scaffold432 TRF Tandem_Repeat 331566 331621 112 + . . scaffold432 TRF Tandem_Repeat 332458 332506 80 + . . scaffold432 GLEAN mRNA 334121 335835 0.999997 - . ID=CGI_10023097; scaffold432 GLEAN promoter 335593 336592 1 + . ID=CGI_10023098; scaffold432 GLEAN promoter 335836 336835 0.999997 - . ID=CGI_10023097; scaffold432 GLEAN mRNA 336593 338830 1 + . ID=CGI_10023098; scaffold432 GLEAN mRNA 341867 343144 1 - . ID=CGI_10023099; scaffold432 GLEAN promoter 343145 344144 1 - . ID=CGI_10023099; scaffold432 WUBlastX LTR_DIRS 346057 346284 52 - . . scaffold432 WUBlastX LINE_CR1-L2 346795 347412 70 + . . scaffold432 WUBlastX LINE_L2 346888 347409 199 + . . scaffold432 GLEAN promoter 356525 357524 1 + . ID=CGI_10023100; scaffold432 GLEAN mRNA 357525 364258 1 + . ID=CGI_10023100; scaffold432 TRF Tandem_Repeat 358176 358233 116 + . . scaffold432 TRF Tandem_Repeat 359753 359809 114 + . . scaffold432 GLEAN promoter 365486 366485 0.544852 + . ID=CGI_10023101; scaffold432 GLEAN mRNA 366486 371092 0.544852 + . ID=CGI_10023101; scaffold432 TRF Tandem_Repeat 369414 369463 66 + . . scaffold432 WUBlastX DNA_hAT 369776 370048 48 + . . scaffold432 WUBlastX DNA_hAT 369788 369895 56 + . . scaffold432 WUBlastX DNA_hAT 370029 370154 28 + . . scaffold432 GLEAN promoter 379692 380691 0.996819 + . ID=CGI_10023102; scaffold432 GLEAN mRNA 380692 389157 0.996819 + . ID=CGI_10023102; scaffold432 TRF Tandem_Repeat 391228 391264 74 + . . scaffold432 GLEAN promoter 400629 401628 0.85663 + . ID=CGI_10023103; scaffold432 TRF Tandem_Repeat 400844 400886 86 + . . scaffold432 GLEAN mRNA 401629 433124 0.85663 + . ID=CGI_10023103; scaffold432 GLEAN mRNA 435734 443865 0.999226 - . ID=CGI_10023104; scaffold432 TRF Tandem_Repeat 443519 443565 53 + . . scaffold432 GLEAN promoter 443866 444865 0.999226 - . ID=CGI_10023104; scaffold432 GLEAN mRNA 448306 461266 0.82108 - . ID=CGI_10023105; scaffold432 TRF Tandem_Repeat 457906 457954 71 + . . scaffold432 GLEAN promoter 461267 462266 0.82108 - . ID=CGI_10023105; scaffold432 TRF Tandem_Repeat 466307 466392 154 + . . scaffold432 TRF Tandem_Repeat 466448 466487 71 + . . scaffold432 TRF Tandem_Repeat 467459 467492 59 + . . scaffold432 TRF Tandem_Repeat 469810 469864 110 + . . scaffold432 GLEAN promoter 474568 475567 0.998598 + . ID=CGI_10023106; scaffold432 GLEAN mRNA 475568 477583 0.998598 + . ID=CGI_10023106; scaffold432 WUBlastX LINE_CR1-L2 479451 479885 52 + . . scaffold432 WUBlastX LINE_CR1-L2 479451 480005 27 + . . scaffold432 TRF Tandem_Repeat 482050 482094 90 + . . scaffold432 WUBlastX LINE_RTE-BovB 495177 495695 40 - . . scaffold432 WUBlastX LINE_RTE-BovB 495213 495653 47 - . . scaffold432 WUBlastX LINE_RTE-BovB 495366 495632 72 - . . scaffold432 TRF Tandem_Repeat 505310 505367 116 + . . scaffold432 GLEAN promoter 539701 540700 0.414765 + . ID=CGI_10023107; scaffold432 GLEAN mRNA 540701 542545 0.414765 + . ID=CGI_10023107; scaffold432 TRF Tandem_Repeat 562399 562436 76 + . . scaffold432 TRF Tandem_Repeat 563534 563572 69 + . . scaffold432 TRF Tandem_Repeat 563570 563663 97 + . . scaffold432 GLEAN promoter 565710 566709 0.654509 + . ID=CGI_10023108; scaffold432 GLEAN mRNA 566710 582627 0.654509 + . ID=CGI_10023108; scaffold432 TRF Tandem_Repeat 572633 572689 114 + . . scaffold432 GLEAN promoter 582382 583381 0.999895 + . ID=CGI_10023109; scaffold432 GLEAN mRNA 583382 606005 0.999895 + . ID=CGI_10023109; scaffold432 TRF Tandem_Repeat 585999 586025 54 + . . scaffold432 TRF Tandem_Repeat 587886 587943 116 + . . scaffold432 TRF Tandem_Repeat 596125 596168 88 + . . scaffold432 TRF Tandem_Repeat 608442 608501 120 + . . scaffold432 GLEAN promoter 609913 610912 0.999676 + . ID=CGI_10023111; scaffold432 GLEAN mRNA 610263 610867 1 - . ID=CGI_10023110; scaffold432 GLEAN promoter 610868 611867 1 - . ID=CGI_10023110; scaffold432 GLEAN mRNA 610913 633037 0.999676 + . ID=CGI_10023111; scaffold432 TRF Tandem_Repeat 612172 612593 332 + . . scaffold432 TRF Tandem_Repeat 612252 612659 271 + . . scaffold432 TRF Tandem_Repeat 612384 612593 271 + . . scaffold432 TRF Tandem_Repeat 612723 612852 138 + . . scaffold432 TRF Tandem_Repeat 614966 614990 50 + . . scaffold432 TRF Tandem_Repeat 615105 615146 84 + . . scaffold432 TRF Tandem_Repeat 629466 629517 104 + . . scaffold432 GLEAN mRNA 633610 634503 1 - . ID=CGI_10023112; scaffold432 GLEAN promoter 633889 634888 0.984574 + . ID=CGI_10023113; scaffold432 GLEAN promoter 634504 635503 1 - . ID=CGI_10023112; scaffold432 GLEAN mRNA 634889 649322 0.984574 + . ID=CGI_10023113; scaffold432 GLEAN mRNA 649729 653259 1 - . ID=CGI_10023114; scaffold432 TRF Tandem_Repeat 652127 652151 50 + . . scaffold432 GLEAN promoter 652995 653994 0.983046 + . ID=CGI_10023115; scaffold432 GLEAN promoter 653260 654259 1 - . ID=CGI_10023114; scaffold432 GLEAN mRNA 653995 657864 0.983046 + . ID=CGI_10023115; scaffold432 GLEAN promoter 657741 658740 1 + . ID=CGI_10023116; scaffold432 GLEAN mRNA 658741 662150 1 + . ID=CGI_10023116; scaffold432 GLEAN mRNA 664665 677791 0.748866 - . ID=CGI_10023117; scaffold432 TRF Tandem_Repeat 674406 674493 77 + . . scaffold432 GLEAN promoter 677792 678791 0.748866 - . ID=CGI_10023117; scaffold432 TRF Tandem_Repeat 688032 688081 100 + . . scaffold432 GLEAN mRNA 691830 693812 1 - . ID=CGI_10023118; scaffold432 TRF Tandem_Repeat 692159 692192 50 + . . scaffold432 GLEAN promoter 693813 694812 1 - . ID=CGI_10023118; scaffold432 TRF Tandem_Repeat 695110 695136 54 + . . scaffold432 GLEAN mRNA 720813 726190 0.996496 - . ID=CGI_10023119; scaffold432 WUBlastX DNA_hAT 720897 721373 34 - . . scaffold432 WUBlastX DNA_hAT 724520 725299 76 - . . scaffold432 GLEAN promoter 726191 727190 0.996496 - . ID=CGI_10023119; scaffold432 GLEAN mRNA 728697 733393 0.995435 - . ID=CGI_10023120; scaffold432 WUBlastX DNA_Crypton 728706 729104 43 - . . scaffold432 WUBlastX DNA_Crypton 732124 732453 110 - . . scaffold432 WUBlastX DNA_Crypton 732447 732950 85 - . . scaffold432 GLEAN promoter 733394 734393 0.995435 - . ID=CGI_10023120; scaffold432 TRF Tandem_Repeat 735277 735311 70 + . . scaffold432 TRF Tandem_Repeat 735359 735402 88 + . . scaffold432 GLEAN mRNA 740168 745494 0.992134 - . ID=CGI_10023121; scaffold432 GLEAN promoter 745495 746494 0.992134 - . ID=CGI_10023121; scaffold432 WUBlastX LINE_RTE-X 746023 746625 315 + . . scaffold432 WUBlastX LTR_DIRS 749938 750084 72 - . . scaffold432 TRF Tandem_Repeat 750340 750369 60 + . . scaffold432 GLEAN promoter 754396 755395 0.920555 + . ID=CGI_10023122; scaffold432 GLEAN mRNA 755396 766450 0.920555 + . ID=CGI_10023122; scaffold432 GLEAN mRNA 770607 783812 0.994036 - . ID=CGI_10023123; scaffold432 GLEAN promoter 782178 783177 0.530191 + . ID=CGI_10023124; scaffold432 GLEAN mRNA 783178 806579 0.530191 + . ID=CGI_10023124; scaffold432 GLEAN promoter 783813 784812 0.994036 - . ID=CGI_10023123; scaffold432 TRF Tandem_Repeat 792919 793454 549 + . . scaffold432 TRF Tandem_Repeat 792935 793446 618 + . . scaffold432 TRF Tandem_Repeat 792990 793448 248 + . . scaffold432 TRF Tandem_Repeat 800330 800354 50 + . . scaffold432 TRF Tandem_Repeat 801064 801099 63 + . . scaffold432 GLEAN mRNA 802019 802231 0.999372 - . ID=CGI_10023125; scaffold432 GLEAN promoter 802232 803231 0.999372 - . ID=CGI_10023125; scaffold432 TRF Tandem_Repeat 803211 803379 266 + . . scaffold432 TRF Tandem_Repeat 803358 803512 135 + . . scaffold432 GLEAN mRNA 810734 819126 0.626178 - . ID=CGI_10023126; scaffold432 GLEAN promoter 816997 817996 0.999676 + . ID=CGI_10023127; scaffold432 GLEAN mRNA 817997 821563 0.999676 + . ID=CGI_10023127; scaffold432 GLEAN promoter 819127 820126 0.626178 - . ID=CGI_10023126; scaffold432 TRF Tandem_Repeat 820564 820759 270 + . . scaffold43200 WUBlastX LINE_L1-Tx1 35840 37288 291 + . . scaffold43200 WUBlastX LINE_Penelope 41518 42048 127 + . . scaffold43200 WUBlastX LINE_RTE-X 65798 65881 22 - . . scaffold43200 WUBlastX LINE_RTE-X 65955 66047 31 - . . scaffold43200 WUBlastX LINE_RTE-X 65988 66047 31 - . . scaffold43200 WUBlastX LINE_RTE-BovB 66171 66626 27 - . . scaffold43200 WUBlastX LINE_RTE-X 66258 66602 129 - . . scaffold43200 TRF Tandem_Repeat 76027 76092 78 + . . scaffold43200 TRF Tandem_Repeat 79563 79629 80 + . . scaffold43200 TRF Tandem_Repeat 82079 82103 50 + . . scaffold43200 WUBlastX LINE_L1-Tx1 85753 85944 128 - . . scaffold43200 WUBlastX LINE_L1-Tx1 85923 86243 172 - . . scaffold43200 WUBlastX LINE_L1 85929 86330 39 - . . scaffold43200 TRF Tandem_Repeat 86346 86387 84 + . . scaffold43200 TRF Tandem_Repeat 88510 88559 100 + . . scaffold43200 TRF Tandem_Repeat 96940 97005 114 + . . scaffold43200 GLEAN promoter 97578 98577 0.928438 + . ID=CGI_10009329; scaffold43200 GLEAN mRNA 98578 129296 0.928438 + . ID=CGI_10009329; scaffold43200 WUBlastX LINE_L1-Tx1 102454 102816 42 + . . scaffold43200 TRF Tandem_Repeat 117141 117215 150 + . . scaffold43200 WUBlastX LINE_R2-Hero 123111 123443 71 + . . scaffold43200 WUBlastX LINE_R2-Hero 123207 123563 75 + . . scaffold43200 WUBlastX LINE_R2-Hero 123225 123443 93 + . . scaffold43200 WUBlastX LINE_R2-Hero 123609 123815 70 + . . scaffold43200 WUBlastX DNA_TcMar-Tc1 124591 125613 226 - . . scaffold43200 WUBlastX DNA_TcMar-Tc1 124591 125238 230 - . . scaffold43200 TRF Tandem_Repeat 133105 133362 320 + . . scaffold43200 WUBlastX LINE_RTE-X 134740 135051 34 - . . scaffold43200 WUBlastX LINE_RTE-X 144791 144940 75 - . . scaffold43200 WUBlastX LINE_RTE-X 144906 145499 139 - . . scaffold43200 WUBlastX LINE_RTE-X 145251 145718 125 - . . scaffold43200 WUBlastX LINE_RTE-BovB 145254 145829 42 - . . scaffold43200 TRF Tandem_Repeat 158179 158546 175 + . . scaffold43200 TRF Tandem_Repeat 158318 158546 180 + . . scaffold43200 TRF Tandem_Repeat 160519 160571 106 + . . scaffold43200 WUBlastX DNA_TcMar-Tc1 177273 177638 22 + . . scaffold43200 WUBlastX DNA_TcMar-Tc1 177498 177638 41 + . . scaffold43200 WUBlastX DNA_TcMar-Tc1 177584 177922 42 + . . scaffold43200 WUBlastX DNA_TcMar-Tc1 177644 177820 84 + . . scaffold43200 TRF Tandem_Repeat 179898 179944 51 + . . scaffold43200 TRF Tandem_Repeat 181730 181781 61 + . . scaffold43200 TRF Tandem_Repeat 184312 184359 96 + . . scaffold43200 TRF Tandem_Repeat 186620 186663 88 + . . scaffold43200 TRF Tandem_Repeat 196573 198675 2813 + . . scaffold43200 TRF Tandem_Repeat 196573 198675 2790 + . . scaffold43200 TRF Tandem_Repeat 208680 208712 66 + . . scaffold43200 TRF Tandem_Repeat 215712 216270 881 + . . scaffold43200 GLEAN promoter 216296 217295 0.999676 + . ID=CGI_10009331; scaffold43200 GLEAN mRNA 217296 218423 0.999676 + . ID=CGI_10009331; scaffold43200 GLEAN mRNA 219060 219956 0.777701 - . ID=CGI_10009332; scaffold43200 GLEAN promoter 219957 220956 0.777701 - . ID=CGI_10009332; scaffold43200 GLEAN mRNA 224087 229012 0.999354 - . ID=CGI_10009333; scaffold43200 TRF Tandem_Repeat 226905 228285 1758 + . . scaffold43200 TRF Tandem_Repeat 226918 227043 57 + . . scaffold43200 GLEAN promoter 229013 229394 0.999354 - . ID=CGI_10009333; scaffold43206 GLEAN promoter 1 991 0.998399 + . ID=CGI_10009260; scaffold43206 GLEAN mRNA 992 10023 0.998399 + . ID=CGI_10009260; scaffold43206 GLEAN mRNA 12660 44556 0.999674 - . ID=CGI_10009261; scaffold43206 TRF Tandem_Repeat 14722 15000 145 + . . scaffold43206 TRF Tandem_Repeat 14796 14926 76 + . . scaffold43206 TRF Tandem_Repeat 19970 20122 137 + . . scaffold43206 TRF Tandem_Repeat 19982 20122 158 + . . scaffold43206 TRF Tandem_Repeat 31525 31569 90 + . . scaffold43206 TRF Tandem_Repeat 31803 31844 50 + . . scaffold43206 GLEAN promoter 44557 45556 0.999674 - . ID=CGI_10009261; scaffold43206 GLEAN promoter 44896 45895 0.986529 + . ID=CGI_10009262; scaffold43206 GLEAN mRNA 45896 64925 0.986529 + . ID=CGI_10009262; scaffold43206 TRF Tandem_Repeat 66662 66698 65 + . . scaffold43206 TRF Tandem_Repeat 67075 67279 138 + . . scaffold43206 TRF Tandem_Repeat 79622 79654 66 + . . scaffold43206 TRF Tandem_Repeat 79948 79983 72 + . . scaffold43206 GLEAN mRNA 85181 86912 1 - . ID=CGI_10009263; scaffold43206 GLEAN promoter 86913 87912 1 - . ID=CGI_10009263; scaffold43206 GLEAN promoter 89224 90223 0.999178 + . ID=CGI_10009264; scaffold43206 TRF Tandem_Repeat 90052 90108 114 + . . scaffold43206 GLEAN mRNA 90224 93589 0.999178 + . ID=CGI_10009264; scaffold43206 GLEAN mRNA 94626 95930 1 - . ID=CGI_10009265; scaffold43206 GLEAN promoter 95931 96930 1 - . ID=CGI_10009265; scaffold43206 GLEAN promoter 97458 98457 0.557561 + . ID=CGI_10009266; scaffold43206 GLEAN mRNA 98458 99289 0.557561 + . ID=CGI_10009266; scaffold43206 GLEAN mRNA 100120 100671 1 - . ID=CGI_10009267; scaffold43206 GLEAN promoter 100672 101671 1 - . ID=CGI_10009267; scaffold43206 GLEAN mRNA 104459 106660 1 - . ID=CGI_10009268; scaffold43206 GLEAN promoter 106661 107660 1 - . ID=CGI_10009268; scaffold43206 TRF Tandem_Repeat 123820 123852 66 + . . scaffold43206 GLEAN promoter 139977 140976 0.5 + . ID=CGI_10009269; scaffold43206 GLEAN mRNA 140977 141315 0.5 + . ID=CGI_10009269; scaffold43206 GLEAN promoter 145310 146309 1 + . ID=CGI_10009270; scaffold43206 GLEAN mRNA 146310 148513 1 + . ID=CGI_10009270; scaffold43206 GLEAN promoter 157670 158669 0.992512 + . ID=CGI_10009271; scaffold43206 GLEAN mRNA 158670 163768 0.992512 + . ID=CGI_10009271; scaffold43206 TRF Tandem_Repeat 163990 164330 391 + . . scaffold43206 GLEAN promoter 166687 167686 1 + . ID=CGI_10009272; scaffold43206 GLEAN mRNA 167687 169012 1 + . ID=CGI_10009272; scaffold43206 TRF Tandem_Repeat 175321 175404 87 + . . scaffold43206 TRF Tandem_Repeat 175329 175404 89 + . . scaffold43206 TRF Tandem_Repeat 175333 175403 70 + . . scaffold43206 GLEAN promoter 175384 176383 0.863507 + . ID=CGI_10009273; scaffold43206 GLEAN mRNA 176384 184358 0.863507 + . ID=CGI_10009273; scaffold43206 TRF Tandem_Repeat 179897 180219 212 + . . scaffold43206 TRF Tandem_Repeat 179940 180219 225 + . . scaffold43206 WUBlastX LINE_R2-Hero 185888 185974 42 + . . scaffold43206 WUBlastX LINE_R2-Hero 185967 186137 73 + . . scaffold43206 GLEAN promoter 187253 188252 0.558382 + . ID=CGI_10009274; scaffold43206 TRF Tandem_Repeat 188080 188116 74 + . . scaffold43206 GLEAN mRNA 188253 189121 0.558382 + . ID=CGI_10009274; scaffold43206 GLEAN promoter 189638 190637 0.98653 + . ID=CGI_10009275; scaffold43206 GLEAN mRNA 190638 193216 0.98653 + . ID=CGI_10009275; scaffold43206 GLEAN promoter 196960 197959 0.986672 + . ID=CGI_10009276; scaffold43206 GLEAN mRNA 197960 198283 0.986672 + . ID=CGI_10009276; scaffold43206 GLEAN mRNA 199087 206602 0.801516 - . ID=CGI_10009277; scaffold43206 GLEAN promoter 206603 207602 0.801516 - . ID=CGI_10009277; scaffold43206 GLEAN promoter 207013 208012 0.999676 + . ID=CGI_10009278; scaffold43206 GLEAN mRNA 208013 214269 0.999676 + . ID=CGI_10009278; scaffold43206 TRF Tandem_Repeat 212244 212800 653 + . . scaffold43206 GLEAN mRNA 214912 216340 0.656189 - . ID=CGI_10009279; scaffold43206 GLEAN promoter 216341 217340 0.656189 - . ID=CGI_10009279; scaffold43206 TRF Tandem_Repeat 219579 219617 78 + . . scaffold43206 WUBlastX DNA_Sola 222254 222898 35 + . . scaffold43206 WUBlastX DNA_Sola 223044 223259 33 + . . scaffold43206 TRF Tandem_Repeat 223274 223354 117 + . . scaffold43206 WUBlastX DNA_Sola 223505 223714 77 + . . scaffold43206 TRF Tandem_Repeat 226320 226372 106 + . . scaffold43208 GLEAN mRNA 2180 18136 0.572774 - . ID=CGI_10009353; scaffold43208 TRF Tandem_Repeat 2328 2411 105 + . . scaffold43208 TRF Tandem_Repeat 2328 2411 105 + . . scaffold43208 TRF Tandem_Repeat 3027 3211 289 + . . scaffold43208 TRF Tandem_Repeat 3773 3893 217 + . . scaffold43208 TRF Tandem_Repeat 5455 5509 110 + . . scaffold43208 TRF Tandem_Repeat 14038 14071 68 + . . scaffold43208 TRF Tandem_Repeat 14141 14174 68 + . . scaffold43208 TRF Tandem_Repeat 14657 16617 438 + . . scaffold43208 GLEAN promoter 18137 19136 0.572774 - . ID=CGI_10009353; scaffold43208 GLEAN mRNA 19617 46159 0.569221 - . ID=CGI_10009354; scaffold43208 TRF Tandem_Repeat 20170 20229 111 + . . scaffold43208 TRF Tandem_Repeat 20406 20486 58 + . . scaffold43208 TRF Tandem_Repeat 20406 20489 70 + . . scaffold43208 TRF Tandem_Repeat 28557 28583 54 + . . scaffold43208 TRF Tandem_Repeat 34517 34552 72 + . . scaffold43208 TRF Tandem_Repeat 34661 34705 83 + . . scaffold43208 TRF Tandem_Repeat 39997 40049 90 + . . scaffold43208 GLEAN promoter 46160 47159 0.569221 - . ID=CGI_10009354; scaffold43208 GLEAN promoter 49350 50349 0.999949 + . ID=CGI_10009355; scaffold43208 GLEAN mRNA 50350 58470 0.999949 + . ID=CGI_10009355; scaffold43208 TRF Tandem_Repeat 77267 77301 70 + . . scaffold43208 TRF Tandem_Repeat 77708 77741 50 + . . scaffold43208 GLEAN promoter 88931 89930 0.999661 + . ID=CGI_10009356; scaffold43208 GLEAN mRNA 89931 91538 0.999661 + . ID=CGI_10009356; scaffold43208 TRF Tandem_Repeat 91811 91863 76 + . . scaffold43208 TRF Tandem_Repeat 92810 92868 91 + . . scaffold43208 TRF Tandem_Repeat 92885 92909 50 + . . scaffold43208 GLEAN promoter 94225 95224 1 + . ID=CGI_10009357; scaffold43208 TRF Tandem_Repeat 94839 94893 60 + . . scaffold43208 GLEAN mRNA 95225 97400 1 + . ID=CGI_10009357; scaffold43208 TRF Tandem_Repeat 96086 96141 112 + . . scaffold43208 TRF Tandem_Repeat 96657 96690 68 + . . scaffold43208 TRF Tandem_Repeat 100453 100494 84 + . . scaffold43208 WUBlastX LINE_L2 103031 105949 1560 + . . scaffold43208 TRF Tandem_Repeat 110210 110271 106 + . . scaffold43208 TRF Tandem_Repeat 114923 114976 108 + . . scaffold43208 GLEAN promoter 123106 124105 0.962351 + . ID=CGI_10009358; scaffold43208 GLEAN mRNA 124106 156003 0.962351 + . ID=CGI_10009358; scaffold43208 TRF Tandem_Repeat 125218 125276 118 + . . scaffold43208 TRF Tandem_Repeat 125370 125424 110 + . . scaffold43208 TRF Tandem_Repeat 128773 128832 54 + . . scaffold43208 TRF Tandem_Repeat 132609 132787 160 + . . scaffold43208 TRF Tandem_Repeat 133152 133194 86 + . . scaffold43208 TRF Tandem_Repeat 134291 134360 79 + . . scaffold43208 WUBlastX LINE_RTE-X 135114 136430 341 - . . scaffold43208 WUBlastX LINE_RTE-X 135228 136346 407 - . . scaffold43208 TRF Tandem_Repeat 138882 138927 92 + . . scaffold43208 TRF Tandem_Repeat 139582 139638 114 + . . scaffold43208 TRF Tandem_Repeat 155377 155417 82 + . . scaffold43208 TRF Tandem_Repeat 155611 155643 66 + . . scaffold43208 WUBlastX LINE_RTE-X 156508 156684 56 + . . scaffold43208 WUBlastX LINE_RTE-X 156687 156803 23 + . . scaffold43208 TRF Tandem_Repeat 157113 157153 73 + . . scaffold43208 TRF Tandem_Repeat 161253 161288 72 + . . scaffold43208 TRF Tandem_Repeat 164838 164863 52 + . . scaffold43208 TRF Tandem_Repeat 167397 167450 108 + . . scaffold43208 TRF Tandem_Repeat 168346 168380 70 + . . scaffold43208 TRF Tandem_Repeat 175856 175883 56 + . . scaffold43208 TRF Tandem_Repeat 181354 181384 62 + . . scaffold43208 TRF Tandem_Repeat 191863 191890 56 + . . scaffold43208 TRF Tandem_Repeat 194998 195047 66 + . . scaffold43208 TRF Tandem_Repeat 197744 197791 96 + . . scaffold43208 TRF Tandem_Repeat 199933 199978 57 + . . scaffold43208 TRF Tandem_Repeat 199934 199975 50 + . . scaffold43208 TRF Tandem_Repeat 201197 202445 1810 + . . scaffold43208 TRF Tandem_Repeat 206208 206289 157 + . . scaffold43208 TRF Tandem_Repeat 206298 206408 123 + . . scaffold43208 WUBlastX LTR_Ngaro 206594 206824 25 + . . scaffold43208 GLEAN promoter 208673 209672 0.999074 + . ID=CGI_10009359; scaffold43208 GLEAN mRNA 209673 228717 0.999074 + . ID=CGI_10009359; scaffold43208 TRF Tandem_Repeat 211438 211481 88 + . . scaffold43208 TRF Tandem_Repeat 222468 222533 132 + . . scaffold43208 TRF Tandem_Repeat 222748 222777 60 + . . scaffold43210 TRF Tandem_Repeat 9566 9624 118 + . . scaffold43210 TRF Tandem_Repeat 14058 14088 53 + . . scaffold43210 TRF Tandem_Repeat 16625 16677 106 + . . scaffold43210 GLEAN promoter 18750 19749 0.999714 + . ID=CGI_10009439; scaffold43210 GLEAN mRNA 19750 24764 0.999714 + . ID=CGI_10009439; scaffold43210 TRF Tandem_Repeat 19866 19939 139 + . . scaffold43210 WUBlastX LINE_RTE-BovB 25014 25250 55 - . . scaffold43210 WUBlastX LINE_RTE-BovB 25259 25360 39 - . . scaffold43210 WUBlastX LINE_RTE-BovB 25375 25449 21 - . . scaffold43210 GLEAN promoter 30448 31447 0.803019 + . ID=CGI_10009440; scaffold43210 GLEAN mRNA 31448 61471 0.803019 + . ID=CGI_10009440; scaffold43210 TRF Tandem_Repeat 37469 37499 62 + . . scaffold43210 TRF Tandem_Repeat 44927 45008 62 + . . scaffold43210 TRF Tandem_Repeat 50422 50488 116 + . . scaffold43210 GLEAN promoter 60681 61680 0.999972 + . ID=CGI_10009441; scaffold43210 GLEAN mRNA 61681 80477 0.999972 + . ID=CGI_10009441; scaffold43210 TRF Tandem_Repeat 68794 68834 82 + . . scaffold43210 TRF Tandem_Repeat 71134 71165 55 + . . scaffold43210 TRF Tandem_Repeat 71863 71914 104 + . . scaffold43210 TRF Tandem_Repeat 71914 71943 60 + . . scaffold43210 TRF Tandem_Repeat 72297 72357 79 + . . scaffold43210 TRF Tandem_Repeat 73087 73123 74 + . . scaffold43210 TRF Tandem_Repeat 76859 76927 88 + . . scaffold43210 GLEAN mRNA 83955 101664 0.681651 - . ID=CGI_10009442; scaffold43210 TRF Tandem_Repeat 87403 87475 56 + . . scaffold43210 TRF Tandem_Repeat 99314 99379 132 + . . scaffold43210 TRF Tandem_Repeat 100264 100297 68 + . . scaffold43210 GLEAN promoter 101665 102664 0.681651 - . ID=CGI_10009442; scaffold43210 TRF Tandem_Repeat 103695 103744 100 + . . scaffold43210 TRF Tandem_Repeat 106559 106613 110 + . . scaffold43210 TRF Tandem_Repeat 107315 107408 55 + . . scaffold43210 TRF Tandem_Repeat 107315 107408 73 + . . scaffold43210 GLEAN mRNA 109562 118146 0.937811 - . ID=CGI_10009443; scaffold43210 TRF Tandem_Repeat 110758 110976 321 + . . scaffold43210 TRF Tandem_Repeat 112105 112168 85 + . . scaffold43210 GLEAN promoter 118147 119146 0.937811 - . ID=CGI_10009443; scaffold43210 GLEAN promoter 122734 123733 0.98039 + . ID=CGI_10009444; scaffold43210 GLEAN mRNA 123734 129722 0.98039 + . ID=CGI_10009444; scaffold43210 GLEAN mRNA 134685 144570 0.999676 - . ID=CGI_10009445; scaffold43210 TRF Tandem_Repeat 139959 140217 452 + . . scaffold43210 GLEAN promoter 144571 145570 0.999676 - . ID=CGI_10009445; scaffold43210 GLEAN promoter 149736 150735 0.99409 + . ID=CGI_10009446; scaffold43210 GLEAN mRNA 150736 156468 0.99409 + . ID=CGI_10009446; scaffold43210 TRF Tandem_Repeat 155139 155167 51 + . . scaffold43210 GLEAN promoter 155569 156568 0.985072 + . ID=CGI_10009447; scaffold43210 TRF Tandem_Repeat 155653 155689 74 + . . scaffold43210 GLEAN mRNA 156569 163427 0.985072 + . ID=CGI_10009447; scaffold43210 TRF Tandem_Repeat 162150 162407 317 + . . scaffold43210 TRF Tandem_Repeat 168470 168504 70 + . . scaffold43210 TRF Tandem_Repeat 169361 169994 980 + . . scaffold43210 GLEAN mRNA 171001 198787 0.693179 - . ID=CGI_10009448; scaffold43210 WUBlastX LINE_RTE-BovB 183870 184007 70 - . . scaffold43210 WUBlastX DNA_TcMar-Tc1 190706 190918 53 + . . scaffold43210 WUBlastX DNA_TcMar-Tc1 190936 191289 186 + . . scaffold43210 WUBlastX DNA_TcMar-Tc1 191253 191687 191 + . . scaffold43210 GLEAN promoter 198788 199787 0.693179 - . ID=CGI_10009448; scaffold43210 GLEAN promoter 199456 200455 0.618241 + . ID=CGI_10009449; scaffold43210 GLEAN mRNA 200456 200620 0.618241 + . ID=CGI_10009449; scaffold43210 WUBlastX LINE_L1-Tx1 202524 202769 123 - . . scaffold43210 TRF Tandem_Repeat 205164 205196 66 + . . scaffold43210 TRF Tandem_Repeat 208805 210352 1789 + . . scaffold43210 TRF Tandem_Repeat 208805 210052 1633 + . . scaffold43210 TRF Tandem_Repeat 215728 216253 487 + . . scaffold43210 TRF Tandem_Repeat 225992 226791 1139 + . . scaffold43210 TRF Tandem_Repeat 226802 226845 70 + . . scaffold43210 TRF Tandem_Repeat 226806 226844 60 + . . scaffold43240 TRF Tandem_Repeat 7326 7390 121 + . . scaffold43240 TRF Tandem_Repeat 9471 9530 120 + . . scaffold43240 GLEAN mRNA 26432 35265 0.7116 - . ID=CGI_10009585; scaffold43240 GLEAN promoter 35266 36265 0.7116 - . ID=CGI_10009585; scaffold43240 GLEAN mRNA 85969 88038 1 - . ID=CGI_10009586; scaffold43240 GLEAN promoter 88039 89038 1 - . ID=CGI_10009586; scaffold43240 TRF Tandem_Repeat 91653 91717 130 + . . scaffold43240 WUBlastX LINE_CR1-L2 96055 96408 52 - . . scaffold43240 WUBlastX LINE_L2 96055 96525 52 - . . scaffold43240 WUBlastX LINE_CR1-L2 96121 96438 53 - . . scaffold43240 WUBlastX LINE_CR1-L2 96175 96438 78 - . . scaffold43240 TRF Tandem_Repeat 99380 99428 80 + . . scaffold43240 GLEAN promoter 105645 106644 1 + . ID=CGI_10009587; scaffold43240 GLEAN mRNA 106645 109062 1 + . ID=CGI_10009587; scaffold43240 TRF Tandem_Repeat 110916 110958 86 + . . scaffold43240 TRF Tandem_Repeat 122288 122528 308 + . . scaffold43240 TRF Tandem_Repeat 122288 122526 208 + . . scaffold43240 GLEAN promoter 129083 130082 1 + . ID=CGI_10009588; scaffold43240 GLEAN mRNA 130083 132201 1 + . ID=CGI_10009588; scaffold43240 GLEAN mRNA 136904 141720 1 - . ID=CGI_10009589; scaffold43240 GLEAN promoter 141721 142720 1 - . ID=CGI_10009589; scaffold43240 WUBlastX DNA_TcMar-Tc1 142421 142573 28 - . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142454 142567 47 - . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142508 142588 23 - . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142726 143136 94 - . . scaffold43240 WUBlastX DNA_TcMar-Tc1 142804 143196 40 - . . scaffold43240 GLEAN mRNA 144230 147207 1 - . ID=CGI_10009590; scaffold43240 TRF Tandem_Repeat 144416 144853 563 + . . scaffold43240 TRF Tandem_Repeat 146811 146896 118 + . . scaffold43240 GLEAN promoter 147208 148207 1 - . ID=CGI_10009590; scaffold43240 TRF Tandem_Repeat 147279 149000 1950 + . . scaffold43240 TRF Tandem_Repeat 147387 148997 994 + . . scaffold43240 GLEAN mRNA 150692 154279 0.999675 - . ID=CGI_10009591; scaffold43240 TRF Tandem_Repeat 153005 153069 130 + . . scaffold43240 GLEAN promoter 154280 155279 0.999675 - . ID=CGI_10009591; scaffold43240 WUBlastX LINE_RTE-X 154990 155430 28 + . . scaffold43240 WUBlastX LINE_RTE-X 155158 155427 57 + . . scaffold43240 GLEAN mRNA 155731 160777 1 - . ID=CGI_10009592; scaffold43240 GLEAN promoter 160778 161777 1 - . ID=CGI_10009592; scaffold43240 GLEAN promoter 161608 162607 0.999832 + . ID=CGI_10009593; scaffold43240 GLEAN mRNA 162608 169463 0.999832 + . ID=CGI_10009593; scaffold43240 TRF Tandem_Repeat 167586 167616 53 + . . scaffold43240 GLEAN mRNA 173599 204122 0.330439 - . ID=CGI_10009594; scaffold43240 TRF Tandem_Repeat 178146 178172 54 + . . scaffold43240 TRF Tandem_Repeat 189733 189767 52 + . . scaffold43240 TRF Tandem_Repeat 189737 189779 59 + . . scaffold43240 GLEAN promoter 196479 197478 0.998607 + . ID=CGI_10009595; scaffold43240 GLEAN mRNA 197479 230285 0.998607 + . ID=CGI_10009595; scaffold43240 TRF Tandem_Repeat 202797 203249 672 + . . scaffold43240 GLEAN promoter 204123 205122 0.330439 - . ID=CGI_10009594; scaffold43240 TRF Tandem_Repeat 215190 215220 53 + . . scaffold43242 WUBlastX LINE_Penelope 3520 4047 127 - . . scaffold43242 TRF Tandem_Repeat 4545 4745 166 + . . scaffold43242 TRF Tandem_Repeat 4545 4767 129 + . . scaffold43242 WUBlastX DNA_Harbinger 5508 5621 43 + . . scaffold43242 WUBlastX DNA_Harbinger 6188 6394 81 + . . scaffold43242 WUBlastX DNA_Harbinger 6394 6453 38 + . . scaffold43242 TRF Tandem_Repeat 7501 7525 50 + . . scaffold43242 WUBlastX DNA_En-Spm 9060 9638 266 + . . scaffold43242 WUBlastX DNA_En-Spm 9601 9861 71 + . . scaffold43242 WUBlastX DNA_En-Spm 9878 10288 51 + . . scaffold43242 WUBlastX DNA_Harbinger 18512 18607 43 - . . scaffold43242 WUBlastX DNA_Harbinger 18705 18881 77 - . . scaffold43242 WUBlastX DNA_Harbinger 18756 18875 126 - . . scaffold43242 WUBlastX LTR_ERV1 20470 20667 43 - . . scaffold43242 WUBlastX LTR_ERV1 20506 20634 45 - . . scaffold43242 WUBlastX LTR_ERV1 20512 20613 47 - . . scaffold43242 GLEAN mRNA 20616 21020 0.593326 - . ID=CGI_10009542; scaffold43242 GLEAN promoter 21021 22020 0.593326 - . ID=CGI_10009542; scaffold43242 GLEAN promoter 21569 22568 0.422909 + . ID=CGI_10009543; scaffold43242 GLEAN mRNA 22569 22766 0.422909 + . ID=CGI_10009543; scaffold43242 GLEAN promoter 26154 27153 0.878599 + . ID=CGI_10009544; scaffold43242 GLEAN mRNA 27154 33595 0.878599 + . ID=CGI_10009544; scaffold43242 WUBlastX DNA_TcMar-Tc1 28123 28272 31 + . . scaffold43242 WUBlastX DNA_TcMar-Tc1 28186 28353 33 + . . scaffold43242 WUBlastX DNA_TcMar-Tc1 28617 28769 50 + . . scaffold43242 WUBlastX DNA_TcMar-Tc1 28617 28739 58 + . . scaffold43242 WUBlastX DNA_TcMar-Tc1 28909 29196 152 + . . scaffold43242 GLEAN mRNA 31079 31684 0.973387 - . ID=CGI_10009545; scaffold43242 GLEAN promoter 31685 32684 0.973387 - . ID=CGI_10009545; scaffold43242 TRF Tandem_Repeat 31686 32046 555 + . . scaffold43242 TRF Tandem_Repeat 31699 32037 237 + . . scaffold43242 WUBlastX DNA_Kolobok 32583 32792 82 + . . scaffold43242 WUBlastX DNA_Kolobok 33111 33308 57 + . . scaffold43242 WUBlastX DNA_Kolobok 33668 34024 45 - . . scaffold43242 TRF Tandem_Repeat 50023 50121 171 + . . scaffold43242 WUBlastX DNA_TcMar-Pogo 56945 57673 61 - . . scaffold43242 WUBlastX DNA_TcMar-Pogo 57251 57643 73 - . . scaffold43242 WUBlastX DNA_TcMar-Tigge 58169 58285 50 - . . scaffold43242 WUBlastX DNA_TcMar-Tigge 59172 59387 21 - . . scaffold43242 WUBlastX DNA_TcMar-Pogo 59208 59378 76 - . . scaffold43242 WUBlastX DNA_MuDR 63726 64289 235 - . . scaffold43242 WUBlastX DNA_MuDR 64280 64513 65 - . . scaffold43242 TRF Tandem_Repeat 65243 65910 986 + . . scaffold43242 WUBlastX DNA_MuDR 65996 66241 47 - . . scaffold43242 TRF Tandem_Repeat 74527 75330 1053 + . . scaffold43242 TRF Tandem_Repeat 90797 90821 50 + . . scaffold43242 TRF Tandem_Repeat 108998 109252 510 + . . scaffold43242 TRF Tandem_Repeat 124652 124694 50 + . . scaffold43242 WUBlastX DNA_TcMar-Tc2 129876 130292 59 - . . scaffold43242 TRF Tandem_Repeat 137734 138386 928 + . . scaffold43242 TRF Tandem_Repeat 140475 140511 56 + . . scaffold43242 WUBlastX DNA_hAT-Tip100 141981 142415 49 + . . scaffold43242 WUBlastX DNA_hAT-Tip100 142071 142376 58 + . . scaffold43242 WUBlastX DNA_hAT-Tip100 142098 142430 52 + . . scaffold43242 WUBlastX DNA_hAT-hATw 146865 147200 44 + . . scaffold43242 TRF Tandem_Repeat 148781 148854 98 + . . scaffold43242 WUBlastX LTR_Gypsy-Cigr 148898 150229 548 - . . scaffold43242 WUBlastX LTR_Gypsy-Cigr 149561 151117 582 - . . scaffold43242 WUBlastX LTR_Gypsy 150782 151180 82 - . . scaffold43242 WUBlastX LTR_Gypsy 151983 152744 58 - . . scaffold43242 WUBlastX LTR_Gypsy-Cigr 152061 152579 113 - . . scaffold43242 WUBlastX LTR_Gypsy-Cigr 152154 152696 92 - . . scaffold43242 GLEAN promoter 153565 154564 0.118333 + . ID=CGI_10009546; scaffold43242 WUBlastX DNA_TcMar-Tc2 154137 154523 49 + . . scaffold43242 WUBlastX DNA_TcMar-Tc2 154541 154789 51 + . . scaffold43242 GLEAN mRNA 154565 157582 0.118333 + . ID=CGI_10009546; scaffold43242 WUBlastX DNA_TcMar-Fot1 154963 155022 28 + . . scaffold43242 WUBlastX DNA_TcMar-Tc2 155202 155405 93 + . . scaffold43242 GLEAN mRNA 157977 161951 1 - . ID=CGI_10009547; scaffold43242 TRF Tandem_Repeat 158205 158258 54 + . . scaffold43242 TRF Tandem_Repeat 158428 160230 2993 + . . scaffold43242 GLEAN promoter 161952 162951 1 - . ID=CGI_10009547; scaffold43242 GLEAN mRNA 162000 162224 0.481188 - . ID=CGI_10009548; scaffold43242 GLEAN promoter 162225 163224 0.481188 - . ID=CGI_10009548; scaffold43242 GLEAN promoter 164361 165360 1 + . ID=CGI_10009549; scaffold43242 GLEAN mRNA 165361 167706 1 + . ID=CGI_10009549; scaffold43242 GLEAN promoter 174020 175019 0.651123 + . ID=CGI_10009550; scaffold43242 WUBlastX LINE_RTE-X 174250 174555 26 - . . scaffold43242 WUBlastX LINE_RTE-X 174300 174371 33 - . . scaffold43242 WUBlastX LINE_RTE-X 174364 174555 43 - . . scaffold43242 WUBlastX LINE_RTE-X 174373 174729 25 - . . scaffold43242 GLEAN mRNA 175020 177821 0.651123 + . ID=CGI_10009550; scaffold43242 TRF Tandem_Repeat 175191 175227 74 + . . scaffold43242 GLEAN promoter 179813 180812 0.702112 + . ID=CGI_10009551; scaffold43242 GLEAN mRNA 180813 190778 0.702112 + . ID=CGI_10009551; scaffold43242 TRF Tandem_Repeat 181634 181666 57 + . . scaffold43242 GLEAN promoter 192713 193712 1 + . ID=CGI_10009552; scaffold43242 TRF Tandem_Repeat 193103 193168 114 + . . scaffold43242 GLEAN mRNA 193713 198955 1 + . ID=CGI_10009552; scaffold43242 GLEAN promoter 201114 202113 0.994697 + . ID=CGI_10009553; scaffold43242 GLEAN mRNA 202114 203238 0.994697 + . ID=CGI_10009553; scaffold43242 GLEAN mRNA 204961 207899 0.9993 - . ID=CGI_10009554; scaffold43242 GLEAN promoter 207900 208899 0.9993 - . ID=CGI_10009554; scaffold43242 GLEAN promoter 209490 210489 0.28448 + . ID=CGI_10009555; scaffold43242 GLEAN mRNA 210490 228400 0.28448 + . ID=CGI_10009555; scaffold43242 TRF Tandem_Repeat 219471 219516 92 + . . scaffold43242 GLEAN mRNA 230150 230752 1 - . ID=CGI_10009556; scaffold43242 GLEAN promoter 230753 231752 1 - . ID=CGI_10009556; scaffold43244 TRF Tandem_Repeat 168 1245 1480 + . . scaffold43244 TRF Tandem_Repeat 2663 2704 59 + . . scaffold43244 WUBlastX DNA_TcMar-Marin 7580 7771 52 - . . scaffold43244 WUBlastX DNA_TcMar-Marin 7664 7873 37 - . . scaffold43244 WUBlastX DNA_TcMar-Marin 7670 7774 56 - . . scaffold43244 WUBlastX DNA_TcMar-Marin 7848 7940 23 - . . scaffold43244 TRF Tandem_Repeat 10586 10639 108 + . . scaffold43244 WUBlastX LINE_L1-Tx1 23542 24615 41 - . . scaffold43244 WUBlastX LINE_L1-Tx1 23710 24618 179 - . . scaffold43244 WUBlastX LINE_L1 24518 25081 238 - . . scaffold43244 WUBlastX LINE_L1-Tx1 24641 25084 279 - . . scaffold43244 WUBlastX LINE_L1-Tx1 25056 25655 257 - . . scaffold43244 WUBlastX LINE_L1 25619 26086 163 - . . scaffold43244 WUBlastX LINE_CR1 26050 26121 21 - . . scaffold43244 WUBlastX LINE_L1-Tx1 26128 26325 63 - . . scaffold43244 WUBlastX LINE_L1-Tx1 26325 26552 57 - . . scaffold43244 WUBlastX LINE_L1 26367 26591 42 - . . scaffold43244 WUBlastX LINE_L1-Tx1 26576 26686 36 - . . scaffold43244 WUBlastX LINE_L1-Tx1 26680 26730 37 - . . scaffold43244 WUBlastX LINE_L1-Tx1 26683 26739 24 - . . scaffold43244 TRF Tandem_Repeat 45170 45484 285 + . . scaffold43244 TRF Tandem_Repeat 45172 45484 254 + . . scaffold43244 TRF Tandem_Repeat 45989 46217 320 + . . scaffold43244 WUBlastX LINE_L2 51175 51627 113 + . . scaffold43244 WUBlastX LINE_L1 51250 51654 168 + . . scaffold43244 TRF Tandem_Repeat 51883 52887 1554 + . . scaffold43244 WUBlastX LINE_I 54114 54413 63 + . . scaffold43244 WUBlastX LINE_RTE-X 54204 55790 154 + . . scaffold43244 WUBlastX LINE_RTE-X 55736 56251 151 + . . scaffold43244 WUBlastX LINE_RTE-X 55736 56131 194 + . . scaffold43244 WUBlastX LINE_RTE-X 56119 56313 136 + . . scaffold43244 WUBlastX LINE_Proto2 56319 56861 84 + . . scaffold43244 WUBlastX LINE_RTE-X 56328 56654 195 + . . scaffold43244 WUBlastX LINE_RTE-X 56328 56735 150 + . . scaffold43244 WUBlastX LINE_RTE-X 57329 57697 104 + . . scaffold43244 WUBlastX LINE_RTE-X 57338 57643 122 + . . scaffold43244 WUBlastX LINE_RTE-X 57338 57763 98 + . . scaffold43244 WUBlastX LINE_RTE-X 57757 58194 34 + . . scaffold43244 WUBlastX LINE_RTE-X 57760 58071 70 + . . scaffold43244 TRF Tandem_Repeat 64838 64869 55 + . . scaffold43244 TRF Tandem_Repeat 79790 79825 72 + . . scaffold43244 GLEAN mRNA 101080 118088 0.999948 - . ID=CGI_10009612; scaffold43244 TRF Tandem_Repeat 106469 106500 64 + . . scaffold43244 TRF Tandem_Repeat 106556 106587 64 + . . scaffold43244 TRF Tandem_Repeat 111818 111903 64 + . . scaffold43244 GLEAN promoter 118089 119088 0.999948 - . ID=CGI_10009612; scaffold43244 GLEAN mRNA 118516 120119 1 - . ID=CGI_10009613; scaffold43244 GLEAN promoter 120120 121119 1 - . ID=CGI_10009613; scaffold43244 GLEAN promoter 148474 149473 0.965913 + . ID=CGI_10009614; scaffold43244 GLEAN mRNA 149474 150151 0.965913 + . ID=CGI_10009614; scaffold43244 GLEAN promoter 179766 180765 0.5 + . ID=CGI_10009615; scaffold43244 GLEAN mRNA 180766 181449 0.5 + . ID=CGI_10009615; scaffold43244 GLEAN mRNA 184263 201506 0.402837 - . ID=CGI_10009616; scaffold43244 TRF Tandem_Repeat 191609 191678 113 + . . scaffold43244 TRF Tandem_Repeat 198294 198342 71 + . . scaffold43244 TRF Tandem_Repeat 200398 200451 108 + . . scaffold43244 GLEAN promoter 201507 202506 0.402837 - . ID=CGI_10009616; scaffold43244 TRF Tandem_Repeat 203130 203220 137 + . . scaffold43244 TRF Tandem_Repeat 203130 203220 137 + . . scaffold43244 GLEAN mRNA 204787 215070 0.744209 - . ID=CGI_10009617; scaffold43244 WUBlastX RC_Helitron 213966 214325 122 - . . scaffold43244 GLEAN promoter 215071 216070 0.744209 - . ID=CGI_10009617; scaffold43244 WUBlastX LTR_Gypsy 218892 219107 159 + . . scaffold43244 WUBlastX LTR_Gypsy 219088 219723 324 + . . scaffold43244 WUBlastX LTR_Gypsy 219109 219609 333 + . . scaffold43244 WUBlastX LTR_Gypsy 219651 219776 32 + . . scaffold43244 WUBlastX LTR_Gypsy 219794 220198 142 + . . scaffold43244 WUBlastX LTR_Gypsy 219860 220198 153 + . . scaffold43244 WUBlastX LTR_Gypsy 219917 222208 582 + . . scaffold43244 WUBlastX LTR_Gypsy 222225 222530 32 + . . scaffold43244 WUBlastX LTR_Gypsy 222228 222368 69 + . . scaffold43244 WUBlastX LTR_Gypsy 222495 222542 29 + . . scaffold43244 WUBlastX LTR_Gypsy 222516 222587 21 + . . scaffold43244 WUBlastX LINE_RTE-BovB 226928 227125 118 + . . scaffold43244 WUBlastX LINE_RTE-BovB 227098 228027 1055 + . . scaffold43244 WUBlastX LINE_RTE-BovB 227979 228170 136 + . . scaffold43244 WUBlastX LINE_RTE-BovB 228177 229424 1596 + . . scaffold43244 WUBlastX LINE_RTE-BovB 229424 229933 572 + . . scaffold43244 WUBlastX LINE_RTE-BovB 229427 230023 119 + . . scaffold43244 WUBlastX LINE_RTE-BovB 229892 230098 108 + . . scaffold43244 GLEAN mRNA 231786 234231 1 - . ID=CGI_10009618; scaffold43244 GLEAN promoter 234232 235210 1 - . ID=CGI_10009618; scaffold43244 WUBlastX RC_Helitron 234892 235176 106 - . . scaffold43258 WUBlastX LINE_CR1 148 765 85 + . . scaffold43258 WUBlastX LINE_L1 277 1629 414 + . . scaffold43258 WUBlastX LINE_L1-Tx1 277 1425 608 + . . scaffold43258 WUBlastX LINE_LOA 1798 1836 20 + . . scaffold43258 TRF Tandem_Repeat 3547 3612 132 + . . scaffold43258 GLEAN promoter 5180 6179 0.593391 + . ID=CGI_10009626; scaffold43258 GLEAN mRNA 6180 9835 0.593391 + . ID=CGI_10009626; scaffold43258 GLEAN promoter 9814 10813 0.917513 + . ID=CGI_10009627; scaffold43258 GLEAN mRNA 10814 16783 0.917513 + . ID=CGI_10009627; scaffold43258 GLEAN mRNA 17486 34254 1 - . ID=CGI_10009628; scaffold43258 TRF Tandem_Repeat 24611 24644 50 + . . scaffold43258 TRF Tandem_Repeat 25026 25081 112 + . . scaffold43258 GLEAN promoter 34255 35254 1 - . ID=CGI_10009628; scaffold43258 GLEAN mRNA 34386 34624 0.734569 - . ID=CGI_10009629; scaffold43258 GLEAN promoter 34625 35624 0.734569 - . ID=CGI_10009629; scaffold43258 TRF Tandem_Repeat 38902 38953 104 + . . scaffold43258 TRF Tandem_Repeat 45965 46329 446 + . . scaffold43258 TRF Tandem_Repeat 45969 46329 393 + . . scaffold43258 TRF Tandem_Repeat 53488 53534 51 + . . scaffold43258 GLEAN promoter 62924 63923 0.606471 + . ID=CGI_10009630; scaffold43258 GLEAN mRNA 63924 67879 0.606471 + . ID=CGI_10009630; scaffold43258 GLEAN mRNA 68363 72659 0.999605 - . ID=CGI_10009631; scaffold43258 GLEAN promoter 72660 73659 0.999605 - . ID=CGI_10009631; scaffold43258 GLEAN promoter 73827 74826 1 + . ID=CGI_10009632; scaffold43258 GLEAN mRNA 74827 79574 1 + . ID=CGI_10009632; scaffold43258 TRF Tandem_Repeat 85722 85769 96 + . . scaffold43258 GLEAN promoter 89747 90746 0.523441 + . ID=CGI_10009633; scaffold43258 GLEAN mRNA 90747 124672 0.523441 + . ID=CGI_10009633; scaffold43258 WUBlastX DNA_TcMar-Marin 93144 93227 28 - . . scaffold43258 WUBlastX DNA_TcMar-Marin 93181 93309 42 - . . scaffold43258 WUBlastX DNA_TcMar-Marin 93359 93922 64 - . . scaffold43258 TRF Tandem_Repeat 111526 111621 120 + . . scaffold43258 TRF Tandem_Repeat 111828 111946 132 + . . scaffold43258 TRF Tandem_Repeat 118035 118076 52 + . . scaffold43258 TRF Tandem_Repeat 126902 127016 198 + . . scaffold43258 WUBlastX LTR_Ngaro 133548 133826 132 - . . scaffold43258 GLEAN promoter 133740 134739 0.483992 + . ID=CGI_10009634; scaffold43258 WUBlastX LTR_Ngaro 133790 133924 27 - . . scaffold43258 GLEAN mRNA 134740 154295 0.483992 + . ID=CGI_10009634; scaffold43258 WUBlastX LINE_RTE-X 142300 142494 20 - . . scaffold43258 WUBlastX LINE_RTE-X 142825 143166 58 - . . scaffold43258 WUBlastX LINE_RTE-X 143111 143446 57 - . . scaffold43258 WUBlastX LINE_RTE-X 143512 143784 56 - . . scaffold43258 WUBlastX LINE_L2 144430 144669 31 - . . scaffold43258 TRF Tandem_Repeat 155388 156280 1278 + . . scaffold43258 TRF Tandem_Repeat 157088 157128 82 + . . scaffold43258 TRF Tandem_Repeat 159993 160032 80 + . . scaffold43258 TRF Tandem_Repeat 160264 160345 164 + . . scaffold43258 TRF Tandem_Repeat 160759 160810 104 + . . scaffold43258 TRF Tandem_Repeat 167352 167528 196 + . . scaffold43258 TRF Tandem_Repeat 172718 173295 902 + . . scaffold43258 TRF Tandem_Repeat 172718 173295 882 + . . scaffold43258 TRF Tandem_Repeat 172718 173292 916 + . . scaffold43258 WUBlastX LINE_L2 178040 178363 95 - . . scaffold43258 WUBlastX LINE_L2 178085 178570 41 - . . scaffold43258 TRF Tandem_Repeat 179772 181104 378 + . . scaffold43258 TRF Tandem_Repeat 179843 181104 598 + . . scaffold43258 TRF Tandem_Repeat 180548 180922 189 + . . scaffold43258 WUBlastX LTR_Gypsy 181107 181619 131 - . . scaffold43258 WUBlastX LTR_Gypsy 181107 181517 162 - . . scaffold43258 TRF Tandem_Repeat 196666 197935 1549 + . . scaffold43258 TRF Tandem_Repeat 197990 198026 65 + . . scaffold43258 TRF Tandem_Repeat 198330 198375 92 + . . scaffold43258 TRF Tandem_Repeat 198542 198578 74 + . . scaffold43258 TRF Tandem_Repeat 198847 198891 54 + . . scaffold43258 GLEAN promoter 198849 199848 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 199376 199410 70 + . . scaffold43258 TRF Tandem_Repeat 199528 199574 58 + . . scaffold43258 GLEAN mRNA 199849 232336 0.614349 + . ID=CGI_10009635; scaffold43258 TRF Tandem_Repeat 204132 204421 436 + . . scaffold43258 TRF Tandem_Repeat 206847 207128 363 + . . scaffold43258 TRF Tandem_Repeat 209934 210359 635 + . . scaffold43258 TRF Tandem_Repeat 209934 210356 641 + . . scaffold43258 TRF Tandem_Repeat 215484 215817 560 + . . scaffold43258 TRF Tandem_Repeat 220600 221069 467 + . . scaffold43258 TRF Tandem_Repeat 227025 227431 570 + . . scaffold43258 TRF Tandem_Repeat 227026 227431 531 + . . scaffold43272 GLEAN mRNA 3505 21132 0.997753 - . ID=CGI_10009660; scaffold43272 GLEAN promoter 9516 10515 0.393512 + . ID=CGI_10009661; scaffold43272 GLEAN mRNA 10516 32575 0.393512 + . ID=CGI_10009661; scaffold43272 TRF Tandem_Repeat 12980 13018 71 + . . scaffold43272 TRF Tandem_Repeat 13072 13116 90 + . . scaffold43272 TRF Tandem_Repeat 19041 19238 184 + . . scaffold43272 GLEAN promoter 21133 22132 0.997753 - . ID=CGI_10009660; scaffold43272 TRF Tandem_Repeat 33415 33482 136 + . . scaffold43272 GLEAN mRNA 35435 40237 0.999929 - . ID=CGI_10009662; scaffold43272 GLEAN promoter 40238 41237 0.999929 - . ID=CGI_10009662; scaffold43272 TRF Tandem_Repeat 41436 41481 92 + . . scaffold43272 TRF Tandem_Repeat 45896 45958 117 + . . scaffold43272 GLEAN mRNA 50388 56527 0.644365 - . ID=CGI_10009663; scaffold43272 TRF Tandem_Repeat 50785 50873 110 + . . scaffold43272 TRF Tandem_Repeat 54139 54242 174 + . . scaffold43272 GLEAN promoter 56528 57527 0.644365 - . ID=CGI_10009663; scaffold43272 WUBlastX LINE_RTE-X 57704 58276 51 - . . scaffold43272 WUBlastX LINE_RTE-X 57719 58165 73 - . . scaffold43272 WUBlastX LINE_RTE-X 57725 58099 82 - . . scaffold43272 GLEAN mRNA 67094 75125 0.999351 - . ID=CGI_10009664; scaffold43272 GLEAN promoter 74946 75945 0.544144 + . ID=CGI_10009665; scaffold43272 GLEAN promoter 75126 76125 0.999351 - . ID=CGI_10009664; scaffold43272 GLEAN mRNA 75946 86539 0.544144 + . ID=CGI_10009665; scaffold43272 TRF Tandem_Repeat 76837 76892 103 + . . scaffold43272 TRF Tandem_Repeat 78860 78884 50 + . . scaffold43272 GLEAN mRNA 86434 88467 0.999984 - . ID=CGI_10009666; scaffold43272 GLEAN promoter 88468 89467 0.999984 - . ID=CGI_10009666; scaffold43272 TRF Tandem_Repeat 92427 92476 100 + . . scaffold43272 TRF Tandem_Repeat 94076 94139 119 + . . scaffold43272 TRF Tandem_Repeat 94169 94208 71 + . . scaffold43272 GLEAN mRNA 103205 106095 1 - . ID=CGI_10009667; scaffold43272 GLEAN promoter 106096 107095 1 - . ID=CGI_10009667; scaffold43272 TRF Tandem_Repeat 112711 112798 113 + . . scaffold43272 WUBlastX LTR_Gypsy 112888 113073 113 - . . scaffold43272 WUBlastX LTR_Gypsy 112930 113139 75 - . . scaffold43272 WUBlastX LTR_Gypsy 112948 113085 128 - . . scaffold43272 WUBlastX DNA_Kolobok 113909 114136 23 + . . scaffold43272 GLEAN mRNA 114590 115074 1 - . ID=CGI_10009668; scaffold43272 WUBlastX DNA_Kolobok 114713 114868 51 - . . scaffold43272 WUBlastX DNA_Kolobok 114770 114928 25 - . . scaffold43272 WUBlastX DNA_Kolobok 114952 115125 61 - . . scaffold43272 GLEAN promoter 115075 116074 1 - . ID=CGI_10009668; scaffold43272 GLEAN mRNA 115202 130908 0.999617 - . ID=CGI_10009669; scaffold43272 WUBlastX DNA_Kolobok 115214 115474 75 - . . scaffold43272 WUBlastX DNA_Kolobok 115271 115468 78 - . . scaffold43272 WUBlastX DNA_Kolobok 115626 115754 24 - . . scaffold43272 WUBlastX DNA_Kolobok 115647 115781 81 - . . scaffold43272 TRF Tandem_Repeat 116697 117494 1138 + . . scaffold43272 WUBlastX DNA_Kolobok 118721 118927 69 - . . scaffold43272 WUBlastX LTR_Gypsy 119557 119838 75 - . . scaffold43272 WUBlastX LTR_Gypsy-Cigr 119644 119844 102 - . . scaffold43272 WUBlastX LTR_Gypsy 119866 120177 206 + . . scaffold43272 WUBlastX LTR_Gypsy 119926 120243 64 + . . scaffold43272 WUBlastX DNA_hAT-Tip100 121246 121530 56 + . . scaffold43272 TRF Tandem_Repeat 127662 127695 59 + . . scaffold43272 GLEAN promoter 130909 131908 0.999617 - . ID=CGI_10009669; scaffold43272 TRF Tandem_Repeat 135160 135263 109 + . . scaffold43272 TRF Tandem_Repeat 151700 151791 114 + . . scaffold43272 TRF Tandem_Repeat 151868 151999 122 + . . scaffold43272 TRF Tandem_Repeat 152192 152285 109 + . . scaffold43272 TRF Tandem_Repeat 157176 157205 60 + . . scaffold43272 TRF Tandem_Repeat 165479 165504 52 + . . scaffold43272 WUBlastX DNA_Crypton 176988 177320 89 - . . scaffold43272 WUBlastX DNA_Crypton 177003 177695 38 - . . scaffold43272 GLEAN mRNA 177979 178356 0.347843 - . ID=CGI_10009670; scaffold43272 GLEAN promoter 178357 179356 0.347843 - . ID=CGI_10009670; scaffold43272 WUBlastX LTR_Gypsy 178705 178932 71 - . . scaffold43272 TRF Tandem_Repeat 182984 183124 129 + . . scaffold43272 WUBlastX DNA_hAT 185030 185275 89 - . . scaffold43272 TRF Tandem_Repeat 191001 191061 122 + . . scaffold43272 TRF Tandem_Repeat 221676 222327 744 + . . scaffold43272 TRF Tandem_Repeat 228981 229050 115 + . . scaffold43278 TRF Tandem_Repeat 7886 7948 108 + . . scaffold43278 TRF Tandem_Repeat 19696 20069 239 + . . scaffold43278 WUBlastX LINE_Penelope 20747 20848 46 - . . scaffold43278 TRF Tandem_Repeat 23631 23752 75 + . . scaffold43278 TRF Tandem_Repeat 24377 24736 357 + . . scaffold43278 TRF Tandem_Repeat 26658 26695 76 + . . scaffold43278 GLEAN promoter 29202 30201 0.277781 + . ID=CGI_10009619; scaffold43278 GLEAN mRNA 30202 32215 0.277781 + . ID=CGI_10009619; scaffold43278 TRF Tandem_Repeat 46376 46791 371 + . . scaffold43278 TRF Tandem_Repeat 46376 46912 293 + . . scaffold43278 TRF Tandem_Repeat 46376 46624 298 + . . scaffold43278 TRF Tandem_Repeat 46427 46549 154 + . . scaffold43278 TRF Tandem_Repeat 48610 48641 64 + . . scaffold43278 TRF Tandem_Repeat 57406 57527 136 + . . scaffold43278 TRF Tandem_Repeat 58199 58250 104 + . . scaffold43278 TRF Tandem_Repeat 64975 65005 53 + . . scaffold43278 GLEAN promoter 74570 75569 0.560066 + . ID=CGI_10009620; scaffold43278 GLEAN mRNA 75570 76807 0.560066 + . ID=CGI_10009620; scaffold43278 TRF Tandem_Repeat 77017 77043 54 + . . scaffold43278 WUBlastX LINE_Penelope 79638 80303 240 - . . scaffold43278 WUBlastX LINE_Penelope 80350 80514 54 - . . scaffold43278 WUBlastX LINE_Penelope 80422 80601 63 - . . scaffold43278 WUBlastX DNA_hAT-Tip100 80852 81013 21 + . . scaffold43278 WUBlastX DNA_hAT-Tip100 80852 80986 59 + . . scaffold43278 WUBlastX DNA_hAT-Tip100 81751 82149 185 + . . scaffold43278 WUBlastX DNA_hAT-Tip100 82217 82849 184 + . . scaffold43278 GLEAN promoter 86001 87000 0.99677 + . ID=CGI_10009621; scaffold43278 GLEAN mRNA 87001 99512 0.99677 + . ID=CGI_10009621; scaffold43278 TRF Tandem_Repeat 92762 92810 55 + . . scaffold43278 TRF Tandem_Repeat 105496 105711 252 + . . scaffold43278 TRF Tandem_Repeat 106393 106503 141 + . . scaffold43278 TRF Tandem_Repeat 106402 106512 123 + . . scaffold43278 WUBlastX LINE_RTE-X 111421 111633 97 + . . scaffold43278 GLEAN promoter 116279 117278 0.538906 + . ID=CGI_10009622; scaffold43278 TRF Tandem_Repeat 116688 116730 50 + . . scaffold43278 WUBlastX LINE_RTE-X 116776 117042 46 - . . scaffold43278 WUBlastX LINE_RTE-X 116797 116985 55 - . . scaffold43278 GLEAN mRNA 117279 128440 0.538906 + . ID=CGI_10009622; scaffold43278 TRF Tandem_Repeat 122588 122870 338 + . . scaffold43278 TRF Tandem_Repeat 126457 126519 126 + . . scaffold43278 GLEAN promoter 168220 169219 1 + . ID=CGI_10009623; scaffold43278 TRF Tandem_Repeat 168993 169112 136 + . . scaffold43278 GLEAN mRNA 169220 171679 1 + . ID=CGI_10009623; scaffold43278 TRF Tandem_Repeat 175864 178129 3319 + . . scaffold43278 GLEAN promoter 179751 180750 0.959202 + . ID=CGI_10009624; scaffold43278 GLEAN mRNA 180751 210273 0.959202 + . ID=CGI_10009624; scaffold43278 TRF Tandem_Repeat 186819 186863 90 + . . scaffold43278 TRF Tandem_Repeat 194312 194364 106 + . . scaffold43278 TRF Tandem_Repeat 204626 205337 1074 + . . scaffold43278 TRF Tandem_Repeat 219309 219363 110 + . . scaffold43278 GLEAN promoter 221223 222222 0.952671 + . ID=CGI_10009625; scaffold43278 GLEAN mRNA 222223 222927 0.952671 + . ID=CGI_10009625; scaffold43278 TRF Tandem_Repeat 230429 230522 74 + . . scaffold43278 TRF Tandem_Repeat 231692 231778 94 + . . scaffold43278 WUBlastX LTR_Pao 233714 234550 257 - . . scaffold43278 WUBlastX LTR_Pao 234062 234583 300 - . . scaffold43278 WUBlastX LTR_Pao 234574 236583 751 - . . scaffold43280 GLEAN promoter 1052 2051 0.999993 + . ID=CGI_10009652; scaffold43280 WUBlastX LTR_DIRS 1620 1937 33 - . . scaffold43280 WUBlastX LTR_DIRS 1710 1982 24 - . . scaffold43280 GLEAN mRNA 2052 10136 0.999993 + . ID=CGI_10009652; scaffold43280 TRF Tandem_Repeat 14687 14886 310 + . . scaffold43280 TRF Tandem_Repeat 14687 14917 283 + . . scaffold43280 TRF Tandem_Repeat 16647 16780 169 + . . scaffold43280 TRF Tandem_Repeat 16855 16956 105 + . . scaffold43280 TRF Tandem_Repeat 20983 22004 1382 + . . scaffold43280 TRF Tandem_Repeat 22015 23523 2325 + . . scaffold43280 TRF Tandem_Repeat 23764 24162 427 + . . scaffold43280 TRF Tandem_Repeat 23764 24139 353 + . . scaffold43280 TRF Tandem_Repeat 25145 25208 128 + . . scaffold43280 TRF Tandem_Repeat 25541 25586 92 + . . scaffold43280 GLEAN mRNA 27245 29335 1 - . ID=CGI_10009653; scaffold43280 WUBlastX DNA_Sola 28276 28638 78 - . . scaffold43280 WUBlastX DNA_Sola 28669 29022 62 - . . scaffold43280 WUBlastX DNA_Sola 29195 29470 22 - . . scaffold43280 GLEAN promoter 29336 30335 1 - . ID=CGI_10009653; scaffold43280 WUBlastX LINE_RTE-X 39330 39719 28 - . . scaffold43280 WUBlastX LTR_Ngaro 40058 40429 92 - . . scaffold43280 WUBlastX LTR_Ngaro 40426 41094 336 - . . scaffold43280 WUBlastX LTR_Ngaro 41126 41866 57 - . . scaffold43280 WUBlastX LTR_Ngaro 41342 42034 134 - . . scaffold43280 TRF Tandem_Repeat 51177 51263 65 + . . scaffold43280 TRF Tandem_Repeat 51939 52651 864 + . . scaffold43280 TRF Tandem_Repeat 65394 65483 81 + . . scaffold43280 GLEAN promoter 71894 72893 0.999999 + . ID=CGI_10009654; scaffold43280 GLEAN mRNA 72894 74257 0.999999 + . ID=CGI_10009654; scaffold43280 TRF Tandem_Repeat 79928 80034 124 + . . scaffold43280 TRF Tandem_Repeat 85984 87070 1845 + . . scaffold43280 GLEAN promoter 91021 92020 0.543593 + . ID=CGI_10009655; scaffold43280 GLEAN mRNA 92021 113272 0.543593 + . ID=CGI_10009655; scaffold43280 WUBlastX LINE_L1-Tx1 111683 112192 253 - . . scaffold43280 WUBlastX LINE_L1-Tx1 111710 112285 127 - . . scaffold43280 GLEAN mRNA 113419 113898 0.6496 - . ID=CGI_10009656; scaffold43280 GLEAN promoter 113899 114898 0.6496 - . ID=CGI_10009656; scaffold43280 TRF Tandem_Repeat 123128 123178 93 + . . scaffold43280 TRF Tandem_Repeat 123680 123747 127 + . . scaffold43280 TRF Tandem_Repeat 128695 128731 74 + . . scaffold43280 TRF Tandem_Repeat 129610 129662 90 + . . scaffold43280 GLEAN mRNA 132335 177835 0.651964 - . ID=CGI_10009657; scaffold43280 TRF Tandem_Repeat 137193 138406 1616 + . . scaffold43280 TRF Tandem_Repeat 165592 165627 54 + . . scaffold43280 WUBlastX LTR_Gypsy 167479 167622 46 + . . scaffold43280 WUBlastX LTR_Gypsy 167586 168119 287 + . . scaffold43280 WUBlastX LTR_Gypsy 168040 168201 52 + . . scaffold43280 WUBlastX LTR_Gypsy 168118 168300 31 + . . scaffold43280 WUBlastX LTR_Gypsy 168359 168928 257 + . . scaffold43280 WUBlastX LTR_Gypsy 168939 169742 564 + . . scaffold43280 WUBlastX LTR_Gypsy 169721 170158 226 + . . scaffold43280 WUBlastX LTR_Gypsy 170155 170316 39 + . . scaffold43280 WUBlastX LTR_Gypsy 170155 170280 57 + . . scaffold43280 WUBlastX LTR_Gypsy 170807 170974 60 + . . scaffold43280 WUBlastX LTR_Gypsy 170837 171073 21 + . . scaffold43280 WUBlastX LTR_Gypsy 170840 170974 67 + . . scaffold43280 GLEAN promoter 177836 178835 0.651964 - . ID=CGI_10009657; scaffold43280 TRF Tandem_Repeat 180853 180958 54 + . . scaffold43280 GLEAN mRNA 181786 199412 0.999673 - . ID=CGI_10009658; scaffold43280 TRF Tandem_Repeat 183754 183806 88 + . . scaffold43280 TRF Tandem_Repeat 187754 187815 88 + . . scaffold43280 GLEAN promoter 199413 200412 0.999673 - . ID=CGI_10009658; scaffold43280 TRF Tandem_Repeat 200227 200269 68 + . . scaffold43280 TRF Tandem_Repeat 227575 227607 57 + . . scaffold43280 TRF Tandem_Repeat 230748 230974 242 + . . scaffold43280 TRF Tandem_Repeat 230748 230986 246 + . . scaffold43280 TRF Tandem_Repeat 231632 231827 196 + . . scaffold43280 TRF Tandem_Repeat 231640 231917 255 + . . scaffold43280 TRF Tandem_Repeat 231640 231916 288 + . . scaffold43280 TRF Tandem_Repeat 231816 231896 60 + . . scaffold43280 GLEAN promoter 233407 234406 0.999462 + . ID=CGI_10009659; scaffold43280 GLEAN mRNA 234407 237198 0.999462 + . ID=CGI_10009659; scaffold43280 TRF Tandem_Repeat 237616 237680 76 + . . scaffold43280 WUBlastX LINE_L1-Tx1 237720 238460 157 - . . scaffold43290 GLEAN mRNA 1515 2441 1 - . ID=CGI_10009636; scaffold43290 GLEAN promoter 2442 3441 1 - . ID=CGI_10009636; scaffold43290 GLEAN promoter 7235 8234 0.540274 + . ID=CGI_10009637; scaffold43290 GLEAN mRNA 8235 18683 0.540274 + . ID=CGI_10009637; scaffold43290 GLEAN mRNA 17566 41943 0.927015 - . ID=CGI_10009638; scaffold43290 TRF Tandem_Repeat 18697 19217 381 + . . scaffold43290 TRF Tandem_Repeat 18697 19090 382 + . . scaffold43290 TRF Tandem_Repeat 18699 19217 440 + . . scaffold43290 GLEAN promoter 28170 29169 1 + . ID=CGI_10009639; scaffold43290 GLEAN mRNA 29170 31463 1 + . ID=CGI_10009639; scaffold43290 TRF Tandem_Repeat 37481 37523 86 + . . scaffold43290 GLEAN promoter 41944 42943 0.927015 - . ID=CGI_10009638; scaffold43290 TRF Tandem_Repeat 48915 48975 122 + . . scaffold43290 TRF Tandem_Repeat 54216 54251 72 + . . scaffold43290 TRF Tandem_Repeat 60390 60640 402 + . . scaffold43290 TRF Tandem_Repeat 60394 60652 292 + . . scaffold43290 TRF Tandem_Repeat 61043 61163 154 + . . scaffold43290 GLEAN promoter 97625 98624 1 + . ID=CGI_10009640; scaffold43290 GLEAN mRNA 98625 100707 1 + . ID=CGI_10009640; scaffold43290 GLEAN mRNA 111485 136096 0.99969 - . ID=CGI_10009641; scaffold43290 TRF Tandem_Repeat 112724 113269 660 + . . scaffold43290 TRF Tandem_Repeat 124153 124325 249 + . . scaffold43290 GLEAN promoter 136097 137096 0.99969 - . ID=CGI_10009641; scaffold43290 TRF Tandem_Repeat 137018 137312 301 + . . scaffold43290 TRF Tandem_Repeat 137018 137319 205 + . . scaffold43290 TRF Tandem_Repeat 137020 137312 189 + . . scaffold43290 TRF Tandem_Repeat 137041 137293 169 + . . scaffold43290 TRF Tandem_Repeat 139771 140008 221 + . . scaffold43290 TRF Tandem_Repeat 139771 140009 295 + . . scaffold43290 TRF Tandem_Repeat 141206 141263 116 + . . scaffold43290 GLEAN promoter 142203 143202 0.999999 + . ID=CGI_10009642; scaffold43290 GLEAN mRNA 143203 146822 0.999999 + . ID=CGI_10009642; scaffold43290 GLEAN mRNA 151186 156368 0.832629 - . ID=CGI_10009643; scaffold43290 GLEAN promoter 156369 157368 0.832629 - . ID=CGI_10009643; scaffold43290 GLEAN promoter 158875 159874 1 + . ID=CGI_10009644; scaffold43290 GLEAN mRNA 159875 162237 1 + . ID=CGI_10009644; scaffold43290 GLEAN mRNA 166305 171710 0.887809 - . ID=CGI_10009645; scaffold43290 GLEAN promoter 171711 172710 0.887809 - . ID=CGI_10009645; scaffold43290 GLEAN mRNA 173919 188001 0.992512 - . ID=CGI_10009646; scaffold43290 GLEAN promoter 188002 189001 0.992512 - . ID=CGI_10009646; scaffold43290 GLEAN mRNA 199099 201746 1 - . ID=CGI_10009647; scaffold43290 GLEAN promoter 201747 202746 1 - . ID=CGI_10009647; scaffold43290 GLEAN promoter 207134 208133 0.737369 + . ID=CGI_10009648; scaffold43290 TRF Tandem_Repeat 207248 207331 168 + . . scaffold43290 GLEAN mRNA 208134 214602 0.737369 + . ID=CGI_10009648; scaffold43290 WUBlastX LINE_L2 208532 208663 42 + . . scaffold43290 WUBlastX LINE_L2 208678 209751 512 + . . scaffold43290 GLEAN mRNA 215180 222601 0.48135 - . ID=CGI_10009649; scaffold43290 TRF Tandem_Repeat 216980 217059 80 + . . scaffold43290 TRF Tandem_Repeat 216980 217030 79 + . . scaffold43290 TRF Tandem_Repeat 216993 217059 68 + . . scaffold43290 TRF Tandem_Repeat 217599 217784 252 + . . scaffold43290 TRF Tandem_Repeat 219282 219342 122 + . . scaffold43290 GLEAN promoter 222302 223301 0.987465 + . ID=CGI_10009650; scaffold43290 GLEAN promoter 222602 223601 0.48135 - . ID=CGI_10009649; scaffold43290 GLEAN mRNA 223302 233933 0.987465 + . ID=CGI_10009650; scaffold43290 TRF Tandem_Repeat 233032 233131 155 + . . scaffold43290 GLEAN mRNA 234679 237064 1 - . ID=CGI_10009651; scaffold43290 GLEAN promoter 237065 238064 1 - . ID=CGI_10009651; scaffold43296 GLEAN promoter 1 874 0.811491 + . ID=CGI_10009736; scaffold43296 GLEAN mRNA 875 11134 0.811491 + . ID=CGI_10009736; scaffold43296 GLEAN mRNA 10970 13337 0.999376 - . ID=CGI_10009737; scaffold43296 GLEAN promoter 13338 14337 0.999376 - . ID=CGI_10009737; scaffold43296 GLEAN promoter 14247 15246 0.999855 + . ID=CGI_10009738; scaffold43296 GLEAN mRNA 15247 16430 0.999855 + . ID=CGI_10009738; scaffold43296 GLEAN mRNA 18121 19624 0.995871 - . ID=CGI_10009739; scaffold43296 GLEAN promoter 19625 20624 0.995871 - . ID=CGI_10009739; scaffold43296 TRF Tandem_Repeat 21572 21603 55 + . . scaffold43296 GLEAN mRNA 24021 29649 1 - . ID=CGI_10009740; scaffold43296 GLEAN promoter 29650 30649 1 - . ID=CGI_10009740; scaffold43296 TRF Tandem_Repeat 32716 32792 154 + . . scaffold43296 TRF Tandem_Repeat 41213 41269 60 + . . scaffold43296 TRF Tandem_Repeat 41406 41597 174 + . . scaffold43296 TRF Tandem_Repeat 41448 41597 174 + . . scaffold43296 TRF Tandem_Repeat 42026 42113 167 + . . scaffold43296 TRF Tandem_Repeat 44942 44994 99 + . . scaffold43296 TRF Tandem_Repeat 45104 45146 86 + . . scaffold43296 GLEAN promoter 45675 46674 0.648527 + . ID=CGI_10009741; scaffold43296 GLEAN mRNA 46675 58514 0.648527 + . ID=CGI_10009741; scaffold43296 TRF Tandem_Repeat 52288 52344 114 + . . scaffold43296 TRF Tandem_Repeat 62263 62295 66 + . . scaffold43296 TRF Tandem_Repeat 64065 64136 135 + . . scaffold43296 GLEAN mRNA 68525 74381 0.281407 - . ID=CGI_10009742; scaffold43296 GLEAN promoter 74382 75381 0.281407 - . ID=CGI_10009742; scaffold43296 TRF Tandem_Repeat 82892 82953 124 + . . scaffold43296 TRF Tandem_Repeat 82998 83029 64 + . . scaffold43296 TRF Tandem_Repeat 84719 86073 607 + . . scaffold43296 TRF Tandem_Repeat 84724 86073 1326 + . . scaffold43296 TRF Tandem_Repeat 84724 86073 1254 + . . scaffold43296 GLEAN mRNA 94377 121610 0.537251 - . ID=CGI_10009743; scaffold43296 TRF Tandem_Repeat 109327 109378 104 + . . scaffold43296 TRF Tandem_Repeat 120330 120479 205 + . . scaffold43296 WUBlastX LTR_ERV1 121521 121862 30 - . . scaffold43296 GLEAN promoter 121611 122610 0.537251 - . ID=CGI_10009743; scaffold43296 GLEAN mRNA 122674 123003 0.587512 - . ID=CGI_10009744; scaffold43296 GLEAN promoter 123004 124003 0.587512 - . ID=CGI_10009744; scaffold43296 TRF Tandem_Repeat 124527 124577 102 + . . scaffold43296 TRF Tandem_Repeat 127598 127635 69 + . . scaffold43296 TRF Tandem_Repeat 127635 127681 94 + . . scaffold43296 TRF Tandem_Repeat 128614 128671 116 + . . scaffold43296 TRF Tandem_Repeat 139626 139677 95 + . . scaffold43296 GLEAN promoter 146551 147550 0.662398 + . ID=CGI_10009745; scaffold43296 GLEAN mRNA 147551 168700 0.662398 + . ID=CGI_10009745; scaffold43296 TRF Tandem_Repeat 149493 149742 263 + . . scaffold43296 TRF Tandem_Repeat 152977 153037 122 + . . scaffold43296 TRF Tandem_Repeat 164216 164277 117 + . . scaffold43296 TRF Tandem_Repeat 188721 188770 73 + . . scaffold43296 TRF Tandem_Repeat 188721 188770 73 + . . scaffold43296 TRF Tandem_Repeat 188768 188803 54 + . . scaffold43296 TRF Tandem_Repeat 195919 195950 64 + . . scaffold43296 GLEAN mRNA 205924 218305 0.498765 - . ID=CGI_10009746; scaffold43296 TRF Tandem_Repeat 217100 217130 62 + . . scaffold43296 GLEAN promoter 218306 219305 0.498765 - . ID=CGI_10009746; scaffold43296 TRF Tandem_Repeat 218738 218778 82 + . . scaffold433 GLEAN promoter 1 326 0.999884 + . ID=CGI_10027042; scaffold433 GLEAN mRNA 327 3325 0.999884 + . ID=CGI_10027042; scaffold433 TRF Tandem_Repeat 6430 6599 191 + . . scaffold433 TRF Tandem_Repeat 6430 6599 173 + . . scaffold433 TRF Tandem_Repeat 6599 6785 119 + . . scaffold433 TRF Tandem_Repeat 6668 6787 107 + . . scaffold433 TRF Tandem_Repeat 7876 8068 282 + . . scaffold433 WUBlastX LTR_Ngaro 9960 10562 359 - . . scaffold433 WUBlastX LTR_Ngaro 10559 10942 241 - . . scaffold433 WUBlastX LTR_Ngaro 10559 11071 208 - . . scaffold433 WUBlastX LTR_Ngaro 11039 12028 51 - . . scaffold433 WUBlastX LTR_Ngaro 11451 11717 69 - . . scaffold433 TRF Tandem_Repeat 12258 12386 107 + . . scaffold433 TRF Tandem_Repeat 13204 13672 421 + . . scaffold433 TRF Tandem_Repeat 13206 13719 703 + . . scaffold433 TRF Tandem_Repeat 13398 13719 277 + . . scaffold433 GLEAN mRNA 14685 14927 0.71791 - . ID=CGI_10027043; scaffold433 GLEAN promoter 14928 15927 0.71791 - . ID=CGI_10027043; scaffold433 TRF Tandem_Repeat 15237 15284 51 + . . scaffold433 WUBlastX LINE_L2 21509 21796 96 + . . scaffold433 WUBlastX LINE_L1 21813 22010 92 + . . scaffold433 GLEAN mRNA 26697 43586 0.551414 - . ID=CGI_10027044; scaffold433 TRF Tandem_Repeat 31005 31049 90 + . . scaffold433 GLEAN promoter 31612 32611 0.999999 + . ID=CGI_10027045; scaffold433 GLEAN mRNA 32612 51583 0.999999 + . ID=CGI_10027045; scaffold433 GLEAN promoter 43587 44586 0.551414 - . ID=CGI_10027044; scaffold433 TRF Tandem_Repeat 53116 53140 50 + . . scaffold433 GLEAN mRNA 54051 55975 1 - . ID=CGI_10027046; scaffold433 GLEAN promoter 55800 56799 0.8507 + . ID=CGI_10027047; scaffold433 GLEAN promoter 55976 56975 1 - . ID=CGI_10027046; scaffold433 GLEAN mRNA 56800 62472 0.8507 + . ID=CGI_10027047; scaffold433 TRF Tandem_Repeat 60278 60316 78 + . . scaffold433 GLEAN mRNA 64156 67863 1 - . ID=CGI_10027048; scaffold433 TRF Tandem_Repeat 67236 67285 50 + . . scaffold433 GLEAN promoter 67864 68863 1 - . ID=CGI_10027048; scaffold433 GLEAN promoter 69594 70593 0.354456 + . ID=CGI_10027049; scaffold433 GLEAN mRNA 70594 79508 0.354456 + . ID=CGI_10027049; scaffold433 GLEAN mRNA 71721 81376 0.994876 - . ID=CGI_10027050; scaffold433 GLEAN promoter 81377 82376 0.994876 - . ID=CGI_10027050; scaffold433 TRF Tandem_Repeat 81535 81588 108 + . . scaffold433 GLEAN mRNA 97303 106718 1 - . ID=CGI_10027051; scaffold433 GLEAN promoter 106719 107718 1 - . ID=CGI_10027051; scaffold433 GLEAN promoter 107900 108899 0.99765 + . ID=CGI_10027052; scaffold433 GLEAN promoter 108512 109511 0.99765 + . ID=CGI_10027053; scaffold433 GLEAN mRNA 108900 109389 0.99765 + . ID=CGI_10027052; scaffold433 GLEAN mRNA 109512 109922 0.99765 + . ID=CGI_10027053; scaffold433 GLEAN mRNA 112019 113857 1 - . ID=CGI_10027054; scaffold433 GLEAN promoter 113229 114228 0.999675 + . ID=CGI_10027055; scaffold433 GLEAN promoter 113858 114857 1 - . ID=CGI_10027054; scaffold433 GLEAN mRNA 114229 117638 0.999675 + . ID=CGI_10027055; scaffold433 TRF Tandem_Repeat 114689 114781 161 + . . scaffold433 TRF Tandem_Repeat 120500 121198 714 + . . scaffold433 GLEAN mRNA 121901 124400 1 - . ID=CGI_10027056; scaffold433 GLEAN promoter 124401 125400 1 - . ID=CGI_10027056; scaffold433 WUBlastX LINE_CR1-L2 125338 125487 40 - . . scaffold433 WUBlastX LINE_CR1 125371 125478 49 - . . scaffold433 WUBlastX LINE_CR1 125441 125764 98 - . . scaffold433 WUBlastX LINE_CR1 125492 125725 122 - . . scaffold433 WUBlastX LINE_CR1-L2 125495 125833 48 - . . scaffold433 WUBlastX LINE_CR1 125528 125737 125 - . . scaffold433 TRF Tandem_Repeat 126399 126487 128 + . . scaffold433 TRF Tandem_Repeat 126534 126627 116 + . . scaffold433 TRF Tandem_Repeat 127605 127701 72 + . . scaffold433 GLEAN promoter 129230 130229 0.999675 + . ID=CGI_10027057; scaffold433 GLEAN mRNA 130230 142006 0.999675 + . ID=CGI_10027057; scaffold433 TRF Tandem_Repeat 131201 131265 67 + . . scaffold433 TRF Tandem_Repeat 131203 131245 68 + . . scaffold433 TRF Tandem_Repeat 138275 138324 55 + . . scaffold433 TRF Tandem_Repeat 138348 139132 997 + . . scaffold433 GLEAN mRNA 146655 150321 1 - . ID=CGI_10027058; scaffold433 GLEAN promoter 150322 151321 1 - . ID=CGI_10027058; scaffold433 TRF Tandem_Repeat 158799 158834 72 + . . scaffold433 GLEAN mRNA 182219 189897 1 - . ID=CGI_10027059; scaffold433 GLEAN promoter 189898 190897 1 - . ID=CGI_10027059; scaffold433 TRF Tandem_Repeat 191662 191706 90 + . . scaffold433 WUBlastX DNA_PiggyBac 191726 192013 36 + . . scaffold433 WUBlastX DNA_PiggyBac 191774 192001 60 + . . scaffold433 WUBlastX DNA_PiggyBac 192012 192146 86 + . . scaffold433 WUBlastX DNA_PiggyBac 192139 192321 95 + . . scaffold433 WUBlastX DNA_PiggyBac 192139 192360 95 + . . scaffold433 WUBlastX DNA_PiggyBac 192561 192632 22 + . . scaffold433 TRF Tandem_Repeat 201755 201821 59 + . . scaffold433 TRF Tandem_Repeat 201758 201803 65 + . . scaffold433 GLEAN promoter 202495 203494 0.837765 + . ID=CGI_10027060; scaffold433 GLEAN mRNA 203495 226770 0.837765 + . ID=CGI_10027060; scaffold433 TRF Tandem_Repeat 206897 206934 76 + . . scaffold433 TRF Tandem_Repeat 208519 208559 82 + . . scaffold433 WUBlastX LTR_Copia 211022 211867 25 + . . scaffold433 TRF Tandem_Repeat 224746 224781 72 + . . scaffold433 TRF Tandem_Repeat 224779 224819 82 + . . scaffold433 WUBlastX LTR_Gypsy 231582 231611 20 + . . scaffold433 WUBlastX LTR_Gypsy 232111 232344 106 + . . scaffold433 WUBlastX LTR_Gypsy 232162 232968 375 + . . scaffold433 WUBlastX LTR_Gypsy 232432 233130 198 + . . scaffold433 TRF Tandem_Repeat 242958 243835 1340 + . . scaffold433 TRF Tandem_Repeat 242958 243835 1340 + . . scaffold433 TRF Tandem_Repeat 242958 243803 1351 + . . scaffold433 TRF Tandem_Repeat 253930 253975 78 + . . scaffold433 TRF Tandem_Repeat 259587 259639 106 + . . scaffold433 WUBlastX DNA_TcMar-Marin 270208 270438 40 + . . scaffold433 WUBlastX DNA_TcMar-Marin 270456 270797 63 + . . scaffold433 WUBlastX DNA_TcMar-Marin 270525 270788 78 + . . scaffold433 TRF Tandem_Repeat 274929 275863 1687 + . . scaffold433 TRF Tandem_Repeat 276025 276073 55 + . . scaffold433 TRF Tandem_Repeat 276025 276073 55 + . . scaffold433 TRF Tandem_Repeat 276025 276067 59 + . . scaffold433 TRF Tandem_Repeat 283174 283427 508 + . . scaffold433 WUBlastX LINE_RTE-X 283473 283751 60 - . . scaffold433 WUBlastX LINE_RTE-X 283536 283817 95 - . . scaffold433 WUBlastX LINE_L2 283587 283865 38 - . . scaffold433 WUBlastX LINE_RTE-X 283602 283823 107 - . . scaffold433 WUBlastX LINE_RTE-X 283852 284004 27 - . . scaffold433 WUBlastX LINE_RTE-BovB 284457 284531 21 - . . scaffold433 GLEAN promoter 289992 290991 1 + . ID=CGI_10027061; scaffold433 GLEAN mRNA 290992 294479 1 + . ID=CGI_10027061; scaffold433 TRF Tandem_Repeat 292578 292668 69 + . . scaffold433 TRF Tandem_Repeat 294664 294977 376 + . . scaffold433 GLEAN promoter 298282 299281 0.991068 + . ID=CGI_10027062; scaffold433 GLEAN mRNA 299282 312708 0.991068 + . ID=CGI_10027062; scaffold433 TRF Tandem_Repeat 300022 300076 60 + . . scaffold433 TRF Tandem_Repeat 301491 301542 104 + . . scaffold433 WUBlastX DNA_TcMar-Tc1 309718 310719 424 + . . scaffold433 GLEAN promoter 313553 314552 0.999992 + . ID=CGI_10027063; scaffold433 GLEAN mRNA 314553 319812 0.999992 + . ID=CGI_10027063; scaffold433 WUBlastX LTR_DIRS 317651 318013 25 - . . scaffold433 GLEAN promoter 320041 321040 0.999675 + . ID=CGI_10027064; scaffold433 GLEAN mRNA 321041 347867 0.999675 + . ID=CGI_10027064; scaffold433 TRF Tandem_Repeat 333044 333075 50 + . . scaffold433 TRF Tandem_Repeat 336644 336676 57 + . . scaffold433 WUBlastX LTR_Ngaro 337600 338319 242 + . . scaffold433 WUBlastX LTR_Ngaro 337705 338550 107 + . . scaffold433 WUBlastX LTR_Ngaro 338540 339715 821 + . . scaffold433 GLEAN promoter 347188 348187 0.999999 + . ID=CGI_10027065; scaffold433 GLEAN mRNA 348188 353916 0.999999 + . ID=CGI_10027065; scaffold433 TRF Tandem_Repeat 355357 355412 112 + . . scaffold433 TRF Tandem_Repeat 357453 357540 108 + . . scaffold433 TRF Tandem_Repeat 358786 358910 58 + . . scaffold433 TRF Tandem_Repeat 362489 362516 56 + . . scaffold433 TRF Tandem_Repeat 365338 365387 66 + . . scaffold433 GLEAN promoter 388887 389886 0.994277 + . ID=CGI_10027066; scaffold433 GLEAN mRNA 389887 393214 0.994277 + . ID=CGI_10027066; scaffold433 TRF Tandem_Repeat 392302 392338 74 + . . scaffold433 GLEAN promoter 393131 394130 0.958773 + . ID=CGI_10027067; scaffold433 GLEAN mRNA 394131 406684 0.958773 + . ID=CGI_10027067; scaffold433 TRF Tandem_Repeat 395517 395564 52 + . . scaffold433 TRF Tandem_Repeat 401029 401072 52 + . . scaffold433 GLEAN promoter 406360 407359 0.877924 + . ID=CGI_10027068; scaffold433 GLEAN mRNA 407360 429733 0.877924 + . ID=CGI_10027068; scaffold433 WUBlastX DNA_P 407737 408177 25 - . . scaffold433 WUBlastX DNA_P 407836 408825 565 - . . scaffold433 WUBlastX DNA_P 408795 409943 265 - . . scaffold433 WUBlastX DNA_P 408795 409760 332 - . . scaffold433 GLEAN mRNA 410206 410613 0.681595 - . ID=CGI_10027069; scaffold433 GLEAN promoter 410614 411613 0.681595 - . ID=CGI_10027069; scaffold433 WUBlastX LINE_L1-Tx1 414001 414066 20 + . . scaffold433 TRF Tandem_Repeat 420821 420882 67 + . . scaffold433 TRF Tandem_Repeat 431446 431532 79 + . . scaffold433 TRF Tandem_Repeat 431617 431720 122 + . . scaffold433 TRF Tandem_Repeat 431629 431735 117 + . . scaffold433 TRF Tandem_Repeat 431629 431805 178 + . . scaffold433 TRF Tandem_Repeat 431804 432184 377 + . . scaffold433 GLEAN mRNA 433713 435913 0.979129 - . ID=CGI_10027070; scaffold433 GLEAN promoter 435914 436913 0.979129 - . ID=CGI_10027070; scaffold433 GLEAN mRNA 435922 436374 0.749076 - . ID=CGI_10027071; scaffold433 GLEAN promoter 436375 437374 0.749076 - . ID=CGI_10027071; scaffold433 GLEAN promoter 437072 438071 1 + . ID=CGI_10027072; scaffold433 GLEAN mRNA 438072 440197 1 + . ID=CGI_10027072; scaffold433 GLEAN promoter 441801 442800 1 + . ID=CGI_10027073; scaffold433 GLEAN mRNA 442801 445230 1 + . ID=CGI_10027073; scaffold433 TRF Tandem_Repeat 443427 443465 78 + . . scaffold433 TRF Tandem_Repeat 443512 443563 104 + . . scaffold433 TRF Tandem_Repeat 447095 447149 110 + . . scaffold433 TRF Tandem_Repeat 448728 448758 62 + . . scaffold433 TRF Tandem_Repeat 449448 449480 66 + . . scaffold433 TRF Tandem_Repeat 452845 452879 70 + . . scaffold433 GLEAN promoter 455112 456111 0.317728 + . ID=CGI_10027074; scaffold433 GLEAN mRNA 456112 473771 0.317728 + . ID=CGI_10027074; scaffold433 TRF Tandem_Repeat 460153 460244 175 + . . scaffold433 TRF Tandem_Repeat 463416 464033 679 + . . scaffold433 TRF Tandem_Repeat 463416 464051 629 + . . scaffold433 WUBlastX LINE_RTE-X 466182 466574 29 + . . scaffold433 TRF Tandem_Repeat 470031 470069 78 + . . scaffold433 TRF Tandem_Repeat 470069 470107 78 + . . scaffold433 TRF Tandem_Repeat 471188 471254 54 + . . scaffold433 TRF Tandem_Repeat 472194 472240 94 + . . scaffold433 TRF Tandem_Repeat 472503 472550 96 + . . scaffold433 GLEAN promoter 474665 475664 0.618186 + . ID=CGI_10027076; scaffold433 GLEAN mRNA 474705 484091 1 - . ID=CGI_10027075; scaffold433 GLEAN mRNA 475665 475907 0.618186 + . ID=CGI_10027076; scaffold433 GLEAN promoter 483253 484252 1 + . ID=CGI_10027077; scaffold433 GLEAN promoter 484092 485091 1 - . ID=CGI_10027075; scaffold433 GLEAN mRNA 484253 492002 1 + . ID=CGI_10027077; scaffold433 TRF Tandem_Repeat 487472 488233 1362 + . . scaffold433 TRF Tandem_Repeat 489743 490276 915 + . . scaffold433 TRF Tandem_Repeat 498431 498464 68 + . . scaffold433 GLEAN promoter 498740 499739 1 + . ID=CGI_10027078; scaffold433 GLEAN mRNA 499740 502315 1 + . ID=CGI_10027078; scaffold433 GLEAN promoter 513208 514207 1 + . ID=CGI_10027079; scaffold433 GLEAN mRNA 514208 517472 1 + . ID=CGI_10027079; scaffold433 WUBlastX LINE_CR1 526755 527063 25 + . . scaffold433 TRF Tandem_Repeat 527866 527897 64 + . . scaffold433 GLEAN mRNA 543099 553113 0.99942 - . ID=CGI_10027080; scaffold433 TRF Tandem_Repeat 546160 546193 68 + . . scaffold433 TRF Tandem_Repeat 551207 551252 85 + . . scaffold433 GLEAN promoter 553114 554113 0.99942 - . ID=CGI_10027080; scaffold433 WUBlastX LINE_RTE-X 559091 559276 72 - . . scaffold433 WUBlastX LINE_RTE-X 559112 559306 62 - . . scaffold433 WUBlastX LINE_RTE-X 559121 559276 78 - . . scaffold433 WUBlastX LINE_RTE-X 559133 559369 42 - . . scaffold433 GLEAN promoter 559677 560676 0.999996 + . ID=CGI_10027081; scaffold433 TRF Tandem_Repeat 560005 560048 88 + . . scaffold433 GLEAN mRNA 560677 561003 0.999996 + . ID=CGI_10027081; scaffold433 GLEAN promoter 569412 570411 0.99663 + . ID=CGI_10027082; scaffold433 GLEAN mRNA 570412 652416 0.99663 + . ID=CGI_10027082; scaffold433 TRF Tandem_Repeat 598886 598912 54 + . . scaffold433 TRF Tandem_Repeat 611758 611899 230 + . . scaffold433 TRF Tandem_Repeat 614900 616084 2028 + . . scaffold433 TRF Tandem_Repeat 626397 628878 3732 + . . scaffold433 TRF Tandem_Repeat 626397 628878 3658 + . . scaffold433 TRF Tandem_Repeat 626397 628878 3875 + . . scaffold433 GLEAN mRNA 654300 662349 0.999402 - . ID=CGI_10027083; scaffold433 GLEAN promoter 662350 663349 0.999402 - . ID=CGI_10027083; scaffold433 GLEAN mRNA 664991 666056 1 - . ID=CGI_10027084; scaffold433 GLEAN promoter 666057 667056 1 - . ID=CGI_10027084; scaffold433 GLEAN mRNA 667493 669601 1 - . ID=CGI_10027085; scaffold433 GLEAN promoter 669602 670601 1 - . ID=CGI_10027085; scaffold433 GLEAN mRNA 670077 672837 1 - . ID=CGI_10027086; scaffold433 GLEAN promoter 672838 673837 1 - . ID=CGI_10027086; scaffold433 WUBlastX LINE_R2-Hero 675056 675127 34 - . . scaffold433 WUBlastX LINE_R2-Hero 675056 675157 29 - . . scaffold433 WUBlastX LINE_R2-Hero 675601 675753 72 - . . scaffold433 WUBlastX LINE_R2-Hero 675798 677198 367 - . . scaffold433 GLEAN mRNA 678479 685705 0.664903 - . ID=CGI_10027087; scaffold433 TRF Tandem_Repeat 681889 682676 625 + . . scaffold433 GLEAN promoter 685706 686705 0.664903 - . ID=CGI_10027087; scaffold433 WUBlastX LINE_L1 687147 687464 57 + . . scaffold433 WUBlastX LINE_L1-Tx1 687207 687464 83 + . . scaffold433 WUBlastX LINE_L1-Tx1 687219 687560 51 + . . scaffold433 TRF Tandem_Repeat 688410 688453 88 + . . scaffold433 GLEAN mRNA 688915 692319 0.4501 - . ID=CGI_10027088; scaffold433 GLEAN promoter 692320 693319 0.4501 - . ID=CGI_10027088; scaffold433 TRF Tandem_Repeat 692882 692934 106 + . . scaffold433 TRF Tandem_Repeat 698457 699496 1855 + . . scaffold433 TRF Tandem_Repeat 698457 699496 1838 + . . scaffold433 TRF Tandem_Repeat 698457 699494 1868 + . . scaffold433 GLEAN mRNA 703882 722085 0.534969 - . ID=CGI_10027089; scaffold433 GLEAN promoter 722086 723085 0.534969 - . ID=CGI_10027089; scaffold433 TRF Tandem_Repeat 727476 727527 104 + . . scaffold433 TRF Tandem_Repeat 729931 730623 625 + . . scaffold433 TRF Tandem_Repeat 730248 730441 113 + . . scaffold433 WUBlastX LINE_L1 736297 736728 72 + . . scaffold433 WUBlastX LINE_L1-Tx1 736393 736770 200 + . . scaffold433 WUBlastX LINE_L1 736465 736878 150 + . . scaffold433 WUBlastX LINE_L1 736823 736942 25 + . . scaffold433 WUBlastX LINE_L1-Tx1 736829 736921 53 + . . scaffold433 WUBlastX LINE_L1-Tx1 736941 737507 113 + . . scaffold433 WUBlastX LINE_L1 736998 737795 81 + . . scaffold433 WUBlastX LINE_L1-Tx1 738022 738162 28 + . . scaffold433 WUBlastX LINE_L1-Tx1 738161 738397 66 + . . scaffold433 WUBlastX LINE_L1 738164 738523 20 + . . scaffold433 WUBlastX LINE_L1 738167 738442 48 + . . scaffold433 TRF Tandem_Repeat 741455 741517 126 + . . scaffold433 TRF Tandem_Repeat 743178 743209 64 + . . scaffold433 GLEAN mRNA 768391 783283 0.99001 - . ID=CGI_10027090; scaffold433 GLEAN promoter 783284 784283 0.99001 - . ID=CGI_10027090; scaffold433 GLEAN mRNA 786389 794921 0.585691 - . ID=CGI_10027091; scaffold433 GLEAN promoter 794922 795921 0.585691 - . ID=CGI_10027091; scaffold433 WUBlastX LINE_RTE-X 798759 798986 72 + . . scaffold433 WUBlastX LINE_RTE-X 798816 799034 60 + . . scaffold433 TRF Tandem_Repeat 799133 799311 331 + . . scaffold433 TRF Tandem_Repeat 799154 799309 66 + . . scaffold433 TRF Tandem_Repeat 804177 804291 216 + . . scaffold433 TRF Tandem_Repeat 805420 805457 58 + . . scaffold433 GLEAN mRNA 807429 807995 0.993596 - . ID=CGI_10027092; scaffold433 GLEAN promoter 807996 808995 0.993596 - . ID=CGI_10027092; scaffold433 TRF Tandem_Repeat 809416 809995 677 + . . scaffold433 GLEAN promoter 809817 810816 0.351164 + . ID=CGI_10027093; scaffold433 GLEAN mRNA 810817 827461 0.351164 + . ID=CGI_10027093; scaffold433 WUBlastX LINE_RTE-X 811896 812219 162 + . . scaffold433 WUBlastX LINE_RTE-X 812260 812619 89 + . . scaffold433 GLEAN mRNA 824916 830439 0.322923 - . ID=CGI_10027094; scaffold433 GLEAN promoter 830356 831355 1 + . ID=CGI_10027095; scaffold433 GLEAN promoter 830440 831439 0.322923 - . ID=CGI_10027094; scaffold433 GLEAN mRNA 831356 839995 1 + . ID=CGI_10027095; scaffold433 GLEAN promoter 843244 844243 0.870204 + . ID=CGI_10027096; scaffold433 GLEAN mRNA 844244 851210 0.870204 + . ID=CGI_10027096; scaffold433 TRF Tandem_Repeat 847479 847520 77 + . . scaffold433 GLEAN mRNA 863773 865181 1 - . ID=CGI_10027097; scaffold433 GLEAN promoter 865182 866181 1 - . ID=CGI_10027097; scaffold433 TRF Tandem_Repeat 870158 871022 639 + . . scaffold433 GLEAN promoter 873038 874037 0.593312 + . ID=CGI_10027098; scaffold433 GLEAN mRNA 874038 879571 0.593312 + . ID=CGI_10027098; scaffold433 TRF Tandem_Repeat 876145 876940 1402 + . . scaffold433 TRF Tandem_Repeat 878119 879457 1799 + . . scaffold433 GLEAN promoter 883339 884338 0.999994 + . ID=CGI_10027099; scaffold433 GLEAN mRNA 884339 892150 0.999994 + . ID=CGI_10027099; scaffold433 WUBlastX LINE_R2-Hero 889343 889486 55 + . . scaffold433 WUBlastX LINE_R2-Hero 889492 889569 21 + . . scaffold433 TRF Tandem_Repeat 894149 894276 179 + . . scaffold433 TRF Tandem_Repeat 895132 895262 192 + . . scaffold433 TRF Tandem_Repeat 898687 898713 54 + . . scaffold433 TRF Tandem_Repeat 911075 911147 146 + . . scaffold433 TRF Tandem_Repeat 925947 926004 62 + . . scaffold433 TRF Tandem_Repeat 926534 926587 63 + . . scaffold433 TRF Tandem_Repeat 935418 935452 70 + . . scaffold433 GLEAN promoter 938144 939143 0.997569 + . ID=CGI_10027100; scaffold433 GLEAN mRNA 939144 940313 0.997569 + . ID=CGI_10027100; scaffold433 TRF Tandem_Repeat 950512 950570 118 + . . scaffold433 GLEAN promoter 961160 962159 0.655583 + . ID=CGI_10027101; scaffold433 GLEAN mRNA 962160 1001869 0.655583 + . ID=CGI_10027101; scaffold433 TRF Tandem_Repeat 972505 972566 124 + . . scaffold433 TRF Tandem_Repeat 973053 973177 178 + . . scaffold433 TRF Tandem_Repeat 994409 994515 142 + . . scaffold433 TRF Tandem_Repeat 996058 996148 137 + . . scaffold433 TRF Tandem_Repeat 997126 997400 487 + . . scaffold433 GLEAN mRNA 1004540 1005667 1 - . ID=CGI_10027102; scaffold433 GLEAN promoter 1005668 1006667 1 - . ID=CGI_10027102; scaffold433 GLEAN mRNA 1005727 1007404 0.999592 - . ID=CGI_10027103; scaffold433 GLEAN promoter 1007405 1008404 0.999592 - . ID=CGI_10027103; scaffold433 GLEAN mRNA 1011179 1017940 0.593383 - . ID=CGI_10027104; scaffold433 TRF Tandem_Repeat 1015593 1016106 949 + . . scaffold433 GLEAN promoter 1017941 1018940 0.593383 - . ID=CGI_10027104; scaffold433 GLEAN promoter 1017988 1018987 0.247658 + . ID=CGI_10027105; scaffold433 GLEAN mRNA 1018988 1023527 0.247658 + . ID=CGI_10027105; scaffold433 TRF Tandem_Repeat 1042745 1042771 54 + . . scaffold433 TRF Tandem_Repeat 1046782 1047149 335 + . . scaffold433 TRF Tandem_Repeat 1046912 1047431 553 + . . scaffold433 GLEAN promoter 1070098 1071097 0.751143 + . ID=CGI_10027106; scaffold433 GLEAN mRNA 1071098 1084792 0.751143 + . ID=CGI_10027106; scaffold433 TRF Tandem_Repeat 1085995 1086084 54 + . . scaffold433 TRF Tandem_Repeat 1086318 1086379 53 + . . scaffold433 TRF Tandem_Repeat 1087089 1087811 909 + . . scaffold433 GLEAN promoter 1093210 1094209 0.998762 + . ID=CGI_10027107; scaffold433 GLEAN mRNA 1094210 1098428 0.998762 + . ID=CGI_10027107; scaffold433 GLEAN promoter 1101065 1102064 0.362803 + . ID=CGI_10027108; scaffold433 GLEAN mRNA 1102065 1119919 0.362803 + . ID=CGI_10027108; scaffold433 TRF Tandem_Repeat 1114637 1114900 415 + . . scaffold433 TRF Tandem_Repeat 1115187 1115664 545 + . . scaffold433 TRF Tandem_Repeat 1120101 1120134 68 + . . scaffold433 TRF Tandem_Repeat 1121706 1121755 68 + . . scaffold433 GLEAN mRNA 1123475 1132815 0.994218 - . ID=CGI_10027109; scaffold433 TRF Tandem_Repeat 1126279 1126338 93 + . . scaffold433 GLEAN promoter 1132816 1133815 0.994218 - . ID=CGI_10027109; scaffold433 TRF Tandem_Repeat 1133037 1133075 78 + . . scaffold433 GLEAN mRNA 1139819 1142765 1 - . ID=CGI_10027110; scaffold433 GLEAN promoter 1142766 1143765 1 - . ID=CGI_10027110; scaffold433 TRF Tandem_Repeat 1143639 1143704 116 + . . scaffold433 TRF Tandem_Repeat 1149233 1149263 62 + . . scaffold433 GLEAN mRNA 1150467 1164688 0.829278 - . ID=CGI_10027111; scaffold433 TRF Tandem_Repeat 1153767 1153801 52 + . . scaffold433 TRF Tandem_Repeat 1159905 1159970 73 + . . scaffold433 GLEAN promoter 1164689 1165688 0.829278 - . ID=CGI_10027111; scaffold433 TRF Tandem_Repeat 1167491 1167528 76 + . . scaffold433 GLEAN mRNA 1172432 1172905 0.749918 - . ID=CGI_10027112; scaffold433 GLEAN promoter 1172906 1173905 0.749918 - . ID=CGI_10027112; scaffold433 GLEAN mRNA 1175104 1175292 0.982028 - . ID=CGI_10027113; scaffold433 GLEAN promoter 1175293 1176292 0.982028 - . ID=CGI_10027113; scaffold433 GLEAN mRNA 1177659 1183932 1 - . ID=CGI_10027114; scaffold433 TRF Tandem_Repeat 1181717 1181772 71 + . . scaffold433 TRF Tandem_Repeat 1181721 1181775 65 + . . scaffold433 GLEAN promoter 1182988 1183987 0.999621 + . ID=CGI_10027115; scaffold433 GLEAN promoter 1183933 1184932 1 - . ID=CGI_10027114; scaffold433 GLEAN mRNA 1183988 1188682 0.999621 + . ID=CGI_10027115; scaffold433 WUBlastX DNA_Kolobok-Hyd 1184155 1184229 26 + . . scaffold433 WUBlastX DNA_Kolobok-Hyd 1185063 1185257 26 + . . scaffold433 TRF Tandem_Repeat 1186288 1186338 84 + . . scaffold433 TRF Tandem_Repeat 1186349 1187044 938 + . . scaffold433 GLEAN promoter 1198876 1199875 0.4958 + . ID=CGI_10027116; scaffold433 GLEAN mRNA 1199876 1201058 0.4958 + . ID=CGI_10027116; scaffold433 GLEAN mRNA 1202502 1202765 0.999995 - . ID=CGI_10027118; scaffold433 WUBlastX LTR_Pao 1202520 1202759 38 - . . scaffold433 WUBlastX LTR_Gypsy 1202667 1202960 32 - . . scaffold433 GLEAN promoter 1202766 1203765 0.999995 - . ID=CGI_10027118; scaffold433 WUBlastX LTR_ERV1 1202838 1203095 38 - . . scaffold433 WUBlastX LTR_Gypsy 1202913 1203212 75 - . . scaffold433 WUBlastX LTR_Gypsy 1203092 1203964 394 - . . scaffold433 WUBlastX LTR_Gypsy 1203967 1204083 24 - . . scaffold433 WUBlastX LTR_Gypsy 1204090 1204227 31 - . . scaffold433 WUBlastX LTR_Gypsy 1204556 1204816 140 - . . scaffold433 WUBlastX LTR_Gypsy-Cigr 1204625 1204816 155 - . . scaffold433 WUBlastX LTR_Gypsy 1204807 1205088 156 - . . scaffold433 WUBlastX LTR_Gypsy 1204831 1205172 79 - . . scaffold433 TRF Tandem_Repeat 1209791 1209832 50 + . . scaffold433 TRF Tandem_Repeat 1218669 1218850 112 + . . scaffold433 TRF Tandem_Repeat 1218673 1218769 104 + . . scaffold433 TRF Tandem_Repeat 1218688 1218853 209 + . . scaffold433 TRF Tandem_Repeat 1226600 1226627 56 + . . scaffold433 TRF Tandem_Repeat 1226827 1226917 62 + . . scaffold433 WUBlastX LINE_L2 1232113 1233720 168 + . . scaffold433 WUBlastX LINE_L2 1232470 1233720 592 + . . scaffold433 WUBlastX LINE_L2 1233723 1233869 122 + . . scaffold433 WUBlastX LINE_L2 1233871 1234389 191 + . . scaffold433 WUBlastX LINE_CR1-L2 1234476 1234568 22 + . . scaffold433 WUBlastX LINE_L1-Tx1 1235806 1236363 75 - . . scaffold433 WUBlastX LINE_L1-Tx1 1236380 1236571 22 - . . scaffold433 TRF Tandem_Repeat 1239554 1239605 50 + . . scaffold433 WUBlastX LINE_RTE-X 1240269 1240352 22 + . . scaffold433 WUBlastX LINE_RTE-X 1240393 1240440 32 + . . scaffold433 WUBlastX LINE_RTE-X 1240642 1240782 21 + . . scaffold433 WUBlastX LINE_RTE-X 1240678 1240803 24 + . . scaffold433 WUBlastX LINE_RTE-X 1240699 1240782 39 + . . scaffold433 WUBlastX LINE_RTE-X 1240769 1240843 44 + . . scaffold433 WUBlastX LINE_RTE-X 1240802 1240867 60 + . . scaffold433 WUBlastX LINE_RTE-X 1240802 1240900 52 + . . scaffold433 WUBlastX LINE_RTE-X 1240805 1240993 31 + . . scaffold433 WUBlastX LINE_RTE-X 1241089 1241241 38 + . . scaffold433 WUBlastX LINE_RTE-X 1241131 1241241 48 + . . scaffold433 WUBlastX LINE_L1-Tx1 1243507 1243713 79 + . . scaffold433 WUBlastX LINE_RTE-X 1243546 1243710 111 + . . scaffold433 WUBlastX LINE_L1 1243546 1243776 78 + . . scaffold433 WUBlastX LINE_L1 1244286 1244723 46 - . . scaffold433 WUBlastX LINE_RTE-X 1244424 1244972 243 - . . scaffold433 WUBlastX LINE_CR1 1244424 1245113 135 - . . scaffold433 WUBlastX LINE_CR1 1245705 1246238 47 + . . scaffold433 WUBlastX LINE_CR1 1245830 1246033 57 + . . scaffold433 WUBlastX LINE_RTE-X 1245872 1246876 374 + . . scaffold433 WUBlastX LINE_RTE-X 1246885 1247457 130 + . . scaffold433 TRF Tandem_Repeat 1250326 1250367 75 + . . scaffold433 TRF Tandem_Repeat 1250693 1250745 67 + . . scaffold433 TRF Tandem_Repeat 1252174 1252214 73 + . . scaffold433 TRF Tandem_Repeat 1252724 1252763 55 + . . scaffold433 TRF Tandem_Repeat 1252733 1252776 61 + . . scaffold433 GLEAN mRNA 1253355 1253983 0.990768 - . ID=CGI_10027120; scaffold433 GLEAN promoter 1253984 1254983 0.990768 - . ID=CGI_10027120; scaffold433 GLEAN mRNA 1257226 1257435 1 - . ID=CGI_10027121; scaffold433 GLEAN promoter 1257436 1258435 1 - . ID=CGI_10027121; scaffold433 GLEAN mRNA 1258038 1264095 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX LTR_DIRS 1260426 1260611 60 - . . scaffold433 WUBlastX DNA_Maverick 1261563 1261664 27 + . . scaffold433 WUBlastX DNA_Maverick 1261584 1261646 28 + . . scaffold433 WUBlastX DNA_Maverick 1261618 1262157 254 + . . scaffold433 WUBlastX DNA_PiggyBac 1262933 1263718 93 - . . scaffold433 WUBlastX DNA_PiggyBac 1263149 1263631 105 - . . scaffold433 WUBlastX DNA_PiggyBac 1263332 1263790 180 - . . scaffold433 WUBlastX DNA_PiggyBac 1263383 1263733 199 - . . scaffold433 GLEAN promoter 1264096 1265095 0.626587 - . ID=CGI_10027122; scaffold433 WUBlastX LTR_Ngaro 1269849 1270187 119 - . . scaffold433 GLEAN promoter 1272395 1273394 1 + . ID=CGI_10027124; scaffold433 GLEAN mRNA 1273395 1280819 1 + . ID=CGI_10027124; scaffold433 TRF Tandem_Repeat 1278000 1278844 1011 + . . scaffold433 TRF Tandem_Repeat 1279377 1279520 116 + . . scaffold43302 TRF Tandem_Repeat 1172 1240 129 + . . scaffold43302 TRF Tandem_Repeat 1909 2063 86 + . . scaffold43302 TRF Tandem_Repeat 1909 2137 203 + . . scaffold43302 TRF Tandem_Repeat 1951 2063 72 + . . scaffold43302 TRF Tandem_Repeat 1951 2137 202 + . . scaffold43302 WUBlastX DNA_MuDR 2301 3524 415 + . . scaffold43302 WUBlastX DNA_MuDR 3354 3656 82 + . . scaffold43302 TRF Tandem_Repeat 4525 4567 86 + . . scaffold43302 GLEAN mRNA 6372 24073 0.277786 - . ID=CGI_10009755; scaffold43302 TRF Tandem_Repeat 7372 7440 138 + . . scaffold43302 WUBlastX DNA_IS4EU 14349 14888 61 + . . scaffold43302 WUBlastX DNA_Kolobok-IS4 15401 15583 24 + . . scaffold43302 WUBlastX DNA_Kolobok-IS4 15627 15950 54 + . . scaffold43302 WUBlastX DNA_IS4EU 15684 15950 99 + . . scaffold43302 WUBlastX DNA_IS4EU 15967 16257 92 + . . scaffold43302 TRF Tandem_Repeat 21662 21718 105 + . . scaffold43302 TRF Tandem_Repeat 22911 23124 133 + . . scaffold43302 TRF Tandem_Repeat 22920 23121 192 + . . scaffold43302 GLEAN promoter 24074 25073 0.277786 - . ID=CGI_10009755; scaffold43302 GLEAN mRNA 33380 38635 0.799571 - . ID=CGI_10009756; scaffold43302 GLEAN promoter 38636 39635 0.799571 - . ID=CGI_10009756; scaffold43302 GLEAN promoter 38763 39762 1 + . ID=CGI_10009757; scaffold43302 GLEAN mRNA 39763 43662 1 + . ID=CGI_10009757; scaffold43302 GLEAN promoter 43692 44691 0.992844 + . ID=CGI_10009758; scaffold43302 GLEAN mRNA 44692 96293 0.992844 + . ID=CGI_10009758; scaffold43302 GLEAN mRNA 45633 51346 0.798953 - . ID=CGI_10009759; scaffold43302 GLEAN promoter 51347 52346 0.798953 - . ID=CGI_10009759; scaffold43302 WUBlastX DNA_PiggyBac 57665 58399 144 + . . scaffold43302 WUBlastX DNA_PiggyBac 57821 58351 177 + . . scaffold43302 WUBlastX DNA_PiggyBac 59252 59986 144 + . . scaffold43302 WUBlastX DNA_PiggyBac 59408 59938 177 + . . scaffold43302 WUBlastX DNA_PiggyBac 59908 60261 243 + . . scaffold43302 WUBlastX DNA_PiggyBac 59938 60333 211 + . . scaffold43302 WUBlastX DNA_PiggyBac 60345 60905 162 + . . scaffold43302 GLEAN mRNA 80560 82783 0.911752 - . ID=CGI_10009760; scaffold43302 TRF Tandem_Repeat 82410 82461 104 + . . scaffold43302 GLEAN promoter 82784 83783 0.911752 - . ID=CGI_10009760; scaffold43302 TRF Tandem_Repeat 87165 87375 146 + . . scaffold43302 TRF Tandem_Repeat 90663 90701 69 + . . scaffold43302 GLEAN promoter 100816 101815 1 + . ID=CGI_10009761; scaffold43302 GLEAN mRNA 101816 102127 1 + . ID=CGI_10009761; scaffold43302 GLEAN promoter 105823 106822 1 + . ID=CGI_10009762; scaffold43302 GLEAN mRNA 106823 108791 1 + . ID=CGI_10009762; scaffold43302 GLEAN promoter 110366 111365 0.974461 + . ID=CGI_10009763; scaffold43302 GLEAN mRNA 111366 118636 0.974461 + . ID=CGI_10009763; scaffold43302 TRF Tandem_Repeat 112111 112156 92 + . . scaffold43302 TRF Tandem_Repeat 114006 114323 129 + . . scaffold43302 TRF Tandem_Repeat 114006 114330 74 + . . scaffold43302 TRF Tandem_Repeat 116485 116522 76 + . . scaffold43302 TRF Tandem_Repeat 116872 116897 52 + . . scaffold43302 GLEAN promoter 123040 124039 0.974461 + . ID=CGI_10009764; scaffold43302 GLEAN mRNA 124040 127140 0.974461 + . ID=CGI_10009764; scaffold43302 GLEAN mRNA 131942 133087 0.998705 - . ID=CGI_10009765; scaffold43302 GLEAN promoter 133088 134087 0.998705 - . ID=CGI_10009765; scaffold43302 GLEAN mRNA 137632 142078 0.543588 - . ID=CGI_10009766; scaffold43302 GLEAN promoter 142079 143078 0.543588 - . ID=CGI_10009766; scaffold43302 GLEAN mRNA 162155 179789 0.999969 - . ID=CGI_10009767; scaffold43302 TRF Tandem_Repeat 168964 168999 72 + . . scaffold43302 TRF Tandem_Repeat 170594 170628 54 + . . scaffold43302 TRF Tandem_Repeat 172414 172448 54 + . . scaffold43302 TRF Tandem_Repeat 176297 176347 102 + . . scaffold43302 GLEAN promoter 179790 180789 0.999969 - . ID=CGI_10009767; scaffold43302 TRF Tandem_Repeat 196059 196098 80 + . . scaffold43302 GLEAN promoter 199524 200523 0.776608 + . ID=CGI_10009768; scaffold43302 GLEAN promoter 199845 200844 0.838494 + . ID=CGI_10009769; scaffold43302 GLEAN mRNA 200524 200721 0.776608 + . ID=CGI_10009768; scaffold43302 GLEAN mRNA 200845 202269 0.838494 + . ID=CGI_10009769; scaffold43302 GLEAN promoter 201323 202322 0.999369 + . ID=CGI_10009770; scaffold43302 WUBlastX LTR_Copia 201529 201840 54 + . . scaffold43302 GLEAN promoter 201771 202770 0.999931 + . ID=CGI_10009771; scaffold43302 GLEAN mRNA 202323 202508 0.999369 + . ID=CGI_10009770; scaffold43302 GLEAN mRNA 202771 203043 0.999931 + . ID=CGI_10009771; scaffold43302 TRF Tandem_Repeat 217046 217090 90 + . . scaffold43302 TRF Tandem_Repeat 217768 217904 96 + . . scaffold43302 WUBlastX LINE_L1-Tx1 217952 218404 85 - . . scaffold43302 WUBlastX LINE_L1-Tx1 218036 218257 95 - . . scaffold43302 WUBlastX LINE_L1-Tx1 218045 218377 87 - . . scaffold43302 TRF Tandem_Repeat 236518 236569 52 + . . scaffold43302 TRF Tandem_Repeat 236624 236677 81 + . . scaffold43302 TRF Tandem_Repeat 238122 238151 60 + . . scaffold43302 TRF Tandem_Repeat 238549 238599 68 + . . scaffold43314 TRF Tandem_Repeat 10589 10627 51 + . . scaffold43314 GLEAN mRNA 49774 59021 1 - . ID=CGI_10009782; scaffold43314 GLEAN promoter 59022 60021 1 - . ID=CGI_10009782; scaffold43314 WUBlastX LTR_Gypsy 68717 68845 41 + . . scaffold43314 WUBlastX LTR_Gypsy 68735 68839 67 + . . scaffold43314 TRF Tandem_Repeat 68927 68964 58 + . . scaffold43314 TRF Tandem_Repeat 68976 69778 1225 + . . scaffold43314 WUBlastX LTR_Gypsy 69837 70493 80 + . . scaffold43314 WUBlastX LTR_Gypsy 69939 70631 306 + . . scaffold43314 WUBlastX LTR_Gypsy 70657 71868 990 + . . scaffold43314 WUBlastX LTR_Gypsy 71882 73672 1304 + . . scaffold43314 WUBlastX LTR_Gypsy 73920 73949 28 + . . scaffold43314 TRF Tandem_Repeat 76237 76285 98 + . . scaffold43314 WUBlastX LINE_CR1-L2 81555 81917 61 + . . scaffold43314 WUBlastX LINE_CR1 81949 82131 29 + . . scaffold43314 WUBlastX LINE_CR1-L2 82027 82152 42 + . . scaffold43314 WUBlastX LINE_L2 82238 82300 24 + . . scaffold43314 WUBlastX LINE_CR1 83083 83349 22 + . . scaffold43314 WUBlastX LINE_CR1 83155 83349 60 + . . scaffold43314 WUBlastX LINE_CR1 83227 83349 88 + . . scaffold43314 WUBlastX LINE_CR1 83349 84128 147 + . . scaffold43314 WUBlastX LINE_CR1-L2 83358 83954 331 + . . scaffold43314 WUBlastX LINE_CR1-L2 83948 84217 111 + . . scaffold43314 WUBlastX LINE_L2 83951 84331 60 + . . scaffold43314 WUBlastX LINE_L2 84023 84397 29 + . . scaffold43314 TRF Tandem_Repeat 102638 102678 73 + . . scaffold43314 GLEAN mRNA 106139 107055 0.990719 - . ID=CGI_10009783; scaffold43314 TRF Tandem_Repeat 106797 106847 52 + . . scaffold43314 GLEAN promoter 107056 108055 0.990719 - . ID=CGI_10009783; scaffold43314 TRF Tandem_Repeat 111188 111241 99 + . . scaffold43314 TRF Tandem_Repeat 126416 126457 66 + . . scaffold43314 WUBlastX LTR_Gypsy 133284 135587 1393 + . . scaffold43314 WUBlastX LTR_Gypsy 135563 137092 1162 + . . scaffold43314 WUBlastX LTR_Copia 136463 137206 90 + . . scaffold43314 WUBlastX LTR_Copia 137117 137245 31 + . . scaffold43314 WUBlastX LTR_Gypsy-Cigr 137189 137263 21 + . . scaffold43314 WUBlastX DNA_hAT-hATw 150674 151003 52 - . . scaffold43314 WUBlastX DNA_hAT-hATw 150976 151296 49 - . . scaffold43314 WUBlastX DNA_hAT-hATw 151322 151717 31 - . . scaffold43314 WUBlastX DNA_hAT-hATw 151904 152032 38 - . . scaffold43314 WUBlastX DNA_hAT-hATw 152035 152259 34 - . . scaffold43314 WUBlastX DNA_hAT-hATw 155873 156223 33 - . . scaffold43314 WUBlastX DNA_hAT-hATw 155945 156235 57 - . . scaffold43314 WUBlastX DNA_hAT-hATw 156566 156724 62 - . . scaffold43314 WUBlastX DNA_hAT-hATw 156566 156760 21 - . . scaffold43314 WUBlastX DNA_hAT-hATw 156846 156974 27 - . . scaffold43314 WUBlastX DNA_hAT-hATw 156952 157149 36 - . . scaffold43314 WUBlastX LINE_L2 166765 167280 70 - . . scaffold43314 WUBlastX LINE_L2 166914 168224 187 - . . scaffold43314 WUBlastX LINE_L2 167339 167839 315 - . . scaffold43314 WUBlastX LINE_L2 167838 168317 262 - . . scaffold43314 WUBlastX LINE_L2 167853 168410 105 - . . scaffold43314 TRF Tandem_Repeat 174025 174081 114 + . . scaffold43314 TRF Tandem_Repeat 174201 174237 65 + . . scaffold43314 GLEAN promoter 178680 179679 0.999592 + . ID=CGI_10009784; scaffold43314 GLEAN mRNA 179680 181711 0.999592 + . ID=CGI_10009784; scaffold43314 GLEAN promoter 181119 182118 0.651135 + . ID=CGI_10009785; scaffold43314 GLEAN mRNA 182119 187623 0.651135 + . ID=CGI_10009785; scaffold43314 GLEAN promoter 190485 191484 0.377066 + . ID=CGI_10009786; scaffold43314 TRF Tandem_Repeat 190715 190772 50 + . . scaffold43314 GLEAN mRNA 191485 222898 0.377066 + . ID=CGI_10009786; scaffold43314 TRF Tandem_Repeat 215117 215162 92 + . . scaffold43314 GLEAN promoter 223517 224516 1 + . ID=CGI_10009787; scaffold43314 GLEAN mRNA 224517 228337 1 + . ID=CGI_10009787; scaffold43314 GLEAN promoter 227560 228559 0.998274 + . ID=CGI_10009788; scaffold43314 GLEAN mRNA 228560 228946 0.998274 + . ID=CGI_10009788; scaffold43314 GLEAN promoter 228748 229747 0.999992 + . ID=CGI_10009789; scaffold43314 GLEAN mRNA 229748 230767 0.999992 + . ID=CGI_10009789; scaffold43314 TRF Tandem_Repeat 233669 233701 50 + . . scaffold43314 TRF Tandem_Repeat 235999 236049 84 + . . scaffold43314 TRF Tandem_Repeat 237274 237345 144 + . . scaffold43314 GLEAN promoter 238717 239716 1 + . ID=CGI_10009790; scaffold43314 GLEAN mRNA 239717 240714 1 + . ID=CGI_10009790; scaffold43340 TRF Tandem_Repeat 4406 4526 161 + . . scaffold43340 TRF Tandem_Repeat 6184 6212 58 + . . scaffold43340 TRF Tandem_Repeat 7703 7730 56 + . . scaffold43340 TRF Tandem_Repeat 8244 8335 123 + . . scaffold43340 WUBlastX DNA_TcMar-Tc1 12746 12925 49 - . . scaffold43340 WUBlastX DNA_TcMar-Tc1 12891 13067 65 - . . scaffold43340 WUBlastX DNA_TcMar-Tc1 12915 13055 89 - . . scaffold43340 WUBlastX DNA_TcMar-Tc1 13063 13710 132 - . . scaffold43340 WUBlastX DNA_TcMar-Tc1 13513 13758 30 - . . scaffold43340 TRF Tandem_Repeat 14444 14563 69 + . . scaffold43340 TRF Tandem_Repeat 14458 14563 72 + . . scaffold43340 TRF Tandem_Repeat 19411 19545 67 + . . scaffold43340 TRF Tandem_Repeat 19656 20163 457 + . . scaffold43340 TRF Tandem_Repeat 19661 20163 525 + . . scaffold43340 TRF Tandem_Repeat 20744 21014 271 + . . scaffold43340 WUBlastX LINE_RTE-X 21150 21413 72 + . . scaffold43340 WUBlastX LINE_RTE-X 21243 21431 88 + . . scaffold43340 WUBlastX LINE_RTE-X 21246 21527 63 + . . scaffold43340 GLEAN promoter 22295 23294 0.999675 + . ID=CGI_10009921; scaffold43340 GLEAN mRNA 23295 33523 0.999675 + . ID=CGI_10009921; scaffold43340 TRF Tandem_Repeat 27288 27322 70 + . . scaffold43340 TRF Tandem_Repeat 39378 39451 148 + . . scaffold43340 GLEAN promoter 87546 88545 1 + . ID=CGI_10009922; scaffold43340 GLEAN mRNA 88546 90405 1 + . ID=CGI_10009922; scaffold43340 WUBlastX LINE_RTE-X 100758 101030 24 - . . scaffold43340 WUBlastX LINE_RTE-X 100821 101018 45 - . . scaffold43340 WUBlastX LINE_RTE-X 100878 101045 64 - . . scaffold43340 TRF Tandem_Repeat 105229 105280 104 + . . scaffold43340 TRF Tandem_Repeat 105826 105944 102 + . . scaffold43340 TRF Tandem_Repeat 105879 105944 69 + . . scaffold43340 TRF Tandem_Repeat 105963 106021 73 + . . scaffold43340 WUBlastX LINE_RTE-BovB 111417 111650 56 - . . scaffold43340 WUBlastX LINE_RTE-BovB 112156 112260 47 - . . scaffold43340 WUBlastX LINE_CR1 112506 112574 26 - . . scaffold43340 WUBlastX LINE_RTE-BovB 112698 113159 101 - . . scaffold43340 WUBlastX LINE_CR1 113322 113630 93 - . . scaffold43340 WUBlastX LINE_CR1 113343 113693 71 - . . scaffold43340 WUBlastX LINE_CR1 113370 113630 96 - . . scaffold43340 TRF Tandem_Repeat 120629 120673 67 + . . scaffold43340 TRF Tandem_Repeat 121007 121058 104 + . . scaffold43340 GLEAN promoter 123446 124445 0.99999 + . ID=CGI_10009923; scaffold43340 GLEAN mRNA 124446 129939 0.99999 + . ID=CGI_10009923; scaffold43340 GLEAN mRNA 130642 133025 0.385021 - . ID=CGI_10009924; scaffold43340 GLEAN promoter 133026 134025 0.385021 - . ID=CGI_10009924; scaffold43340 TRF Tandem_Repeat 134496 134549 108 + . . scaffold43340 GLEAN promoter 135294 136293 1 + . ID=CGI_10009925; scaffold43340 GLEAN mRNA 136294 140035 1 + . ID=CGI_10009925; scaffold43340 TRF Tandem_Repeat 141993 142059 82 + . . scaffold43340 TRF Tandem_Repeat 141993 142059 57 + . . scaffold43340 TRF Tandem_Repeat 141995 142074 70 + . . scaffold43340 TRF Tandem_Repeat 142006 142059 83 + . . scaffold43340 WUBlastX LINE_RTE-BovB 143322 143438 98 - . . scaffold43340 GLEAN mRNA 143867 148789 0.960147 - . ID=CGI_10009926; scaffold43340 GLEAN promoter 148790 149789 0.960147 - . ID=CGI_10009926; scaffold43340 GLEAN mRNA 155096 165695 0.960147 - . ID=CGI_10009927; scaffold43340 GLEAN promoter 158649 159648 1 + . ID=CGI_10009928; scaffold43340 GLEAN mRNA 159649 165414 1 + . ID=CGI_10009928; scaffold43340 GLEAN promoter 165696 166695 0.960147 - . ID=CGI_10009927; scaffold43340 GLEAN mRNA 165873 166190 0.654722 - . ID=CGI_10009929; scaffold43340 GLEAN promoter 166191 167190 0.654722 - . ID=CGI_10009929; scaffold43340 GLEAN promoter 167994 168993 0.543968 + . ID=CGI_10009930; scaffold43340 GLEAN mRNA 168994 196662 0.543968 + . ID=CGI_10009930; scaffold43340 GLEAN mRNA 169698 181441 0.99952 - . ID=CGI_10009931; scaffold43340 GLEAN promoter 181442 182441 0.99952 - . ID=CGI_10009931; scaffold43340 TRF Tandem_Repeat 189651 189676 52 + . . scaffold43340 TRF Tandem_Repeat 190244 190277 68 + . . scaffold43340 TRF Tandem_Repeat 192001 192070 140 + . . scaffold43340 TRF Tandem_Repeat 197142 197207 132 + . . scaffold43340 GLEAN mRNA 197858 198952 0.82852 - . ID=CGI_10009932; scaffold43340 GLEAN promoter 198953 199952 0.82852 - . ID=CGI_10009932; scaffold43340 TRF Tandem_Repeat 200273 200303 62 + . . scaffold43340 TRF Tandem_Repeat 214904 214940 74 + . . scaffold43340 TRF Tandem_Repeat 214966 215008 86 + . . scaffold43340 GLEAN mRNA 226585 235980 1 - . ID=CGI_10009933; scaffold43340 TRF Tandem_Repeat 228745 229014 193 + . . scaffold43340 TRF Tandem_Repeat 228836 228892 53 + . . scaffold43340 TRF Tandem_Repeat 228968 229249 165 + . . scaffold43340 TRF Tandem_Repeat 229085 229198 128 + . . scaffold43340 GLEAN promoter 235981 236980 1 - . ID=CGI_10009933; scaffold43340 WUBlastX LINE_RTE-X 236319 236657 67 - . . scaffold43340 WUBlastX LINE_L1 238696 238914 27 + . . scaffold43340 WUBlastX LINE_L1-Tx1 238735 239232 54 + . . scaffold43340 WUBlastX LINE_L1-Tx1 238762 238926 65 + . . scaffold43340 WUBlastX LINE_L1 239169 239321 37 + . . scaffold43340 WUBlastX LINE_L1-Tx1 239315 239626 46 + . . scaffold43340 WUBlastX LINE_L1-Tx1 239315 239464 75 + . . scaffold43340 TRF Tandem_Repeat 242116 242147 55 + . . scaffold43340 WUBlastX LINE_CR1 244032 245117 490 + . . scaffold43340 WUBlastX LINE_Rex-Babar 245068 245157 23 + . . scaffold43340 TRF Tandem_Repeat 246287 246341 65 + . . scaffold43340 TRF Tandem_Repeat 246290 246345 71 + . . scaffold43344 GLEAN promoter 1789 2788 0.593391 + . ID=CGI_10009829; scaffold43344 GLEAN mRNA 2789 3229 0.593391 + . ID=CGI_10009829; scaffold43344 TRF Tandem_Repeat 8065 8456 554 + . . scaffold43344 TRF Tandem_Repeat 8811 10829 2302 + . . scaffold43344 TRF Tandem_Repeat 13034 13144 111 + . . scaffold43344 TRF Tandem_Repeat 13042 13143 134 + . . scaffold43344 TRF Tandem_Repeat 13379 13423 90 + . . scaffold43344 TRF Tandem_Repeat 13477 13514 58 + . . scaffold43344 GLEAN promoter 32217 33216 0.700711 + . ID=CGI_10009831; scaffold43344 GLEAN mRNA 33217 33761 0.700711 + . ID=CGI_10009831; scaffold43344 GLEAN promoter 53596 54595 1 + . ID=CGI_10009832; scaffold43344 GLEAN mRNA 54596 61707 1 + . ID=CGI_10009832; scaffold43344 TRF Tandem_Repeat 64471 64501 62 + . . scaffold43344 TRF Tandem_Repeat 65154 65493 314 + . . scaffold43344 TRF Tandem_Repeat 65154 65494 449 + . . scaffold43344 GLEAN mRNA 67211 72066 0.998055 - . ID=CGI_10009833; scaffold43344 GLEAN promoter 71023 72022 0.999931 + . ID=CGI_10009834; scaffold43344 TRF Tandem_Repeat 71467 71505 69 + . . scaffold43344 GLEAN mRNA 72023 76424 0.999931 + . ID=CGI_10009834; scaffold43344 GLEAN promoter 72067 73066 0.998055 - . ID=CGI_10009833; scaffold43344 GLEAN mRNA 75888 81014 1 - . ID=CGI_10009835; scaffold43344 GLEAN promoter 81015 82014 1 - . ID=CGI_10009835; scaffold43344 GLEAN mRNA 82797 94394 0.99935 - . ID=CGI_10009836; scaffold43344 TRF Tandem_Repeat 88768 88797 60 + . . scaffold43344 GLEAN promoter 94395 95394 0.99935 - . ID=CGI_10009836; scaffold43344 GLEAN mRNA 99743 118350 0.558395 - . ID=CGI_10009837; scaffold43344 TRF Tandem_Repeat 104762 106058 1372 + . . scaffold43344 GLEAN promoter 117873 118872 0.858964 + . ID=CGI_10009838; scaffold43344 GLEAN promoter 118351 119350 0.558395 - . ID=CGI_10009837; scaffold43344 GLEAN mRNA 118873 133911 0.858964 + . ID=CGI_10009838; scaffold43344 GLEAN mRNA 135102 139263 1 - . ID=CGI_10009839; scaffold43344 GLEAN promoter 138526 139525 0.999999 + . ID=CGI_10009840; scaffold43344 GLEAN promoter 139264 140263 1 - . ID=CGI_10009839; scaffold43344 GLEAN mRNA 139526 161362 0.999999 + . ID=CGI_10009840; scaffold43344 TRF Tandem_Repeat 146857 146883 54 + . . scaffold43344 TRF Tandem_Repeat 164463 164505 63 + . . scaffold43344 GLEAN mRNA 169240 179465 1 - . ID=CGI_10009841; scaffold43344 GLEAN promoter 179466 180465 1 - . ID=CGI_10009841; scaffold43344 WUBlastX LINE_RTE-X 183409 183597 31 - . . scaffold43344 WUBlastX LINE_RTE-X 183576 183722 34 - . . scaffold43344 GLEAN promoter 190632 191631 0.624685 + . ID=CGI_10009842; scaffold43344 TRF Tandem_Repeat 191110 191547 432 + . . scaffold43344 TRF Tandem_Repeat 191110 191603 425 + . . scaffold43344 GLEAN mRNA 191632 200738 0.624685 + . ID=CGI_10009842; scaffold43344 TRF Tandem_Repeat 193095 193352 208 + . . scaffold43344 TRF Tandem_Repeat 202359 202398 62 + . . scaffold43344 WUBlastX LTR_Gypsy 230395 230637 63 + . . scaffold43344 WUBlastX LTR_Gypsy 231892 232176 23 + . . scaffold43344 WUBlastX LTR_Gypsy 232181 232261 50 + . . scaffold43344 WUBlastX LTR_Gypsy 232257 232376 73 + . . scaffold43344 WUBlastX LTR_Gypsy 232506 232601 65 + . . scaffold43344 TRF Tandem_Repeat 232666 232723 116 + . . scaffold43344 TRF Tandem_Repeat 235452 235536 118 + . . scaffold43358 TRF Tandem_Repeat 666 707 84 + . . scaffold43358 TRF Tandem_Repeat 1928 1955 56 + . . scaffold43358 GLEAN promoter 2626 3625 1 + . ID=CGI_10009966; scaffold43358 GLEAN mRNA 3626 7340 1 + . ID=CGI_10009966; scaffold43358 GLEAN mRNA 12098 20537 0.968059 - . ID=CGI_10009967; scaffold43358 TRF Tandem_Repeat 14744 15116 439 + . . scaffold43358 GLEAN promoter 20538 21537 0.968059 - . ID=CGI_10009967; scaffold43358 GLEAN promoter 22375 23374 0.531609 + . ID=CGI_10009968; scaffold43358 GLEAN mRNA 23375 28662 0.531609 + . ID=CGI_10009968; scaffold43358 GLEAN mRNA 29583 30436 0.996819 - . ID=CGI_10009969; scaffold43358 GLEAN promoter 30437 31436 0.996819 - . ID=CGI_10009969; scaffold43358 WUBlastX LTR_Ngaro 33647 33796 63 - . . scaffold43358 WUBlastX LTR_Ngaro 33769 33963 53 - . . scaffold43358 WUBlastX LTR_Ngaro 33964 34440 232 - . . scaffold43358 WUBlastX LTR_Ngaro 34383 34631 191 - . . scaffold43358 WUBlastX LTR_Gypsy 34407 34688 82 - . . scaffold43358 WUBlastX LTR_Ngaro 34587 35000 78 - . . scaffold43358 WUBlastX LTR_DIRS 34632 35084 39 - . . scaffold43358 WUBlastX LTR_Ngaro 34638 34811 80 - . . scaffold43358 TRF Tandem_Repeat 38702 38739 76 + . . scaffold43358 WUBlastX LINE_L2 39875 40285 24 - . . scaffold43358 WUBlastX LINE_CR1-L2 40064 40285 47 - . . scaffold43358 WUBlastX LINE_L2 40273 40578 99 - . . scaffold43358 WUBlastX LINE_CR1 40357 40653 75 - . . scaffold43358 GLEAN promoter 42207 43206 0.794506 + . ID=CGI_10009970; scaffold43358 GLEAN mRNA 43207 45222 0.794506 + . ID=CGI_10009970; scaffold43358 GLEAN mRNA 46473 47481 1 - . ID=CGI_10009971; scaffold43358 GLEAN promoter 47482 48481 1 - . ID=CGI_10009971; scaffold43358 GLEAN promoter 50416 51415 0.531615 + . ID=CGI_10009972; scaffold43358 GLEAN mRNA 51416 53479 0.531615 + . ID=CGI_10009972; scaffold43358 GLEAN promoter 67813 68812 0.994914 + . ID=CGI_10009973; scaffold43358 GLEAN mRNA 68813 77236 0.994914 + . ID=CGI_10009973; scaffold43358 TRF Tandem_Repeat 73471 73737 444 + . . scaffold43358 GLEAN mRNA 82672 88087 0.999734 - . ID=CGI_10009974; scaffold43358 GLEAN promoter 88088 89087 0.999734 - . ID=CGI_10009974; scaffold43358 GLEAN promoter 89692 90691 0.999999 + . ID=CGI_10009975; scaffold43358 GLEAN mRNA 90692 106539 0.999999 + . ID=CGI_10009975; scaffold43358 TRF Tandem_Repeat 92474 92527 108 + . . scaffold43358 TRF Tandem_Repeat 102367 102407 66 + . . scaffold43358 TRF Tandem_Repeat 109685 109840 170 + . . scaffold43358 GLEAN promoter 122775 123774 0.949704 + . ID=CGI_10009976; scaffold43358 GLEAN mRNA 123775 136005 0.949704 + . ID=CGI_10009976; scaffold43358 WUBlastX LTR_Gypsy 133879 134970 137 + . . scaffold43358 WUBlastX LTR_Gypsy 133879 134802 708 + . . scaffold43358 TRF Tandem_Repeat 155719 155842 248 + . . scaffold43358 GLEAN promoter 156161 157160 0.919817 + . ID=CGI_10009977; scaffold43358 GLEAN mRNA 157161 176563 0.919817 + . ID=CGI_10009977; scaffold43358 TRF Tandem_Repeat 169044 169531 720 + . . scaffold43358 GLEAN mRNA 176572 196304 0.559655 - . ID=CGI_10009978; scaffold43358 GLEAN promoter 196305 197304 0.559655 - . ID=CGI_10009978; scaffold43358 TRF Tandem_Repeat 200267 200304 76 + . . scaffold43358 GLEAN promoter 201154 202153 0.912049 + . ID=CGI_10009979; scaffold43358 GLEAN mRNA 202154 213840 0.912049 + . ID=CGI_10009979; scaffold43358 TRF Tandem_Repeat 205717 205770 108 + . . scaffold43358 TRF Tandem_Repeat 217655 217758 53 + . . scaffold43358 TRF Tandem_Repeat 217802 217886 67 + . . scaffold43358 GLEAN mRNA 218442 219604 0.593251 - . ID=CGI_10009980; scaffold43358 WUBlastX DNA_IS4EU 219021 219146 36 - . . scaffold43358 WUBlastX DNA_IS4EU 219389 220018 62 - . . scaffold43358 GLEAN promoter 219605 220604 0.593251 - . ID=CGI_10009980; scaffold43358 WUBlastX DNA_Crypton 243052 243360 101 + . . scaffold43358 WUBlastX DNA_Crypton 243118 243450 89 + . . scaffold43358 WUBlastX DNA_Harbinger 244867 245028 55 + . . scaffold43358 WUBlastX DNA_Harbinger 245694 245855 63 + . . scaffold43364 TRF Tandem_Repeat 9776 11519 2957 + . . scaffold43364 WUBlastX LINE_L1 16260 16412 26 - . . scaffold43364 WUBlastX LINE_L1-Tx1 16284 17219 148 - . . scaffold43364 WUBlastX LINE_L1-Tx1 17180 17551 86 - . . scaffold43364 WUBlastX LINE_L1-Tx1 17216 17482 127 - . . scaffold43364 TRF Tandem_Repeat 23079 24767 3067 + . . scaffold43364 TRF Tandem_Repeat 29156 29871 975 + . . scaffold43364 TRF Tandem_Repeat 29882 29916 61 + . . scaffold43364 GLEAN promoter 72936 73935 0.618167 + . ID=CGI_10009869; scaffold43364 GLEAN mRNA 73936 74145 0.618167 + . ID=CGI_10009869; scaffold43364 TRF Tandem_Repeat 85595 85853 190 + . . scaffold43364 TRF Tandem_Repeat 85601 85853 246 + . . scaffold43364 TRF Tandem_Repeat 90928 91007 83 + . . scaffold43364 TRF Tandem_Repeat 94304 94330 54 + . . scaffold43364 TRF Tandem_Repeat 96906 96948 86 + . . scaffold43364 TRF Tandem_Repeat 107935 108836 749 + . . scaffold43364 TRF Tandem_Repeat 107941 108836 853 + . . scaffold43364 TRF Tandem_Repeat 132388 134201 1420 + . . scaffold43364 GLEAN mRNA 134688 136362 0.99739 - . ID=CGI_10009870; scaffold43364 GLEAN promoter 136363 137362 0.99739 - . ID=CGI_10009870; scaffold43364 TRF Tandem_Repeat 138083 138135 106 + . . scaffold43364 TRF Tandem_Repeat 142052 142140 114 + . . scaffold43364 TRF Tandem_Repeat 142053 142128 73 + . . scaffold43364 GLEAN mRNA 143206 149990 0.651135 - . ID=CGI_10009871; scaffold43364 GLEAN promoter 149991 150990 0.651135 - . ID=CGI_10009871; scaffold43364 GLEAN mRNA 151387 155085 1 - . ID=CGI_10009872; scaffold43364 GLEAN promoter 155086 156085 1 - . ID=CGI_10009872; scaffold43364 GLEAN mRNA 163135 175631 0.997427 - . ID=CGI_10009873; scaffold43364 GLEAN promoter 175632 176631 0.997427 - . ID=CGI_10009873; scaffold43364 GLEAN promoter 182799 183798 0.76719 + . ID=CGI_10009874; scaffold43364 GLEAN mRNA 183799 209391 0.76719 + . ID=CGI_10009874; scaffold43364 GLEAN promoter 210905 211904 0.433414 + . ID=CGI_10009875; scaffold43364 GLEAN mRNA 211905 235928 0.433414 + . ID=CGI_10009875; scaffold43364 TRF Tandem_Repeat 212888 212933 92 + . . scaffold43364 TRF Tandem_Repeat 214500 214536 65 + . . scaffold43364 TRF Tandem_Repeat 215953 216021 129 + . . scaffold43364 TRF Tandem_Repeat 222553 222812 389 + . . scaffold43364 TRF Tandem_Repeat 222866 222923 73 + . . scaffold43364 TRF Tandem_Repeat 222872 222923 86 + . . scaffold43364 TRF Tandem_Repeat 224268 225267 1287 + . . scaffold43364 TRF Tandem_Repeat 225609 225697 97 + . . scaffold43364 TRF Tandem_Repeat 226932 227161 308 + . . scaffold43364 TRF Tandem_Repeat 233715 234100 108 + . . scaffold43364 TRF Tandem_Repeat 233911 234040 77 + . . scaffold43364 TRF Tandem_Repeat 233954 234102 89 + . . scaffold43364 TRF Tandem_Repeat 233963 234036 60 + . . scaffold43364 TRF Tandem_Repeat 233967 234035 52 + . . scaffold43364 GLEAN promoter 237817 238816 1 + . ID=CGI_10009876; scaffold43364 GLEAN mRNA 238817 242035 1 + . ID=CGI_10009876; scaffold43366 TRF Tandem_Repeat 9271 9365 79 + . . scaffold43366 GLEAN mRNA 9489 17028 0.999415 - . ID=CGI_10009981; scaffold43366 GLEAN promoter 16620 17619 0.671891 + . ID=CGI_10009982; scaffold43366 GLEAN promoter 17029 18028 0.999415 - . ID=CGI_10009981; scaffold43366 GLEAN mRNA 17620 68275 0.671891 + . ID=CGI_10009982; scaffold43366 TRF Tandem_Repeat 18590 18727 123 + . . scaffold43366 TRF Tandem_Repeat 20070 20164 111 + . . scaffold43366 TRF Tandem_Repeat 20112 20224 66 + . . scaffold43366 TRF Tandem_Repeat 20252 20392 97 + . . scaffold43366 TRF Tandem_Repeat 21257 21309 106 + . . scaffold43366 TRF Tandem_Repeat 52135 52194 120 + . . scaffold43366 TRF Tandem_Repeat 53954 54022 138 + . . scaffold43366 GLEAN mRNA 55563 60606 0.999651 - . ID=CGI_10009983; scaffold43366 GLEAN promoter 60607 61606 0.999651 - . ID=CGI_10009983; scaffold43366 WUBlastX LINE_RTE-BovB 68105 68272 101 + . . scaffold43366 GLEAN promoter 71353 72352 0.914146 + . ID=CGI_10009984; scaffold43366 GLEAN mRNA 72353 80378 0.914146 + . ID=CGI_10009984; scaffold43366 WUBlastX LTR_Gypsy 80443 80535 21 + . . scaffold43366 WUBlastX LTR_DIRS 81049 82728 853 + . . scaffold43366 WUBlastX LTR_DIRS 81049 83058 698 + . . scaffold43366 WUBlastX LTR_DIRS 82842 83645 315 + . . scaffold43366 WUBlastX LTR_DIRS 83570 83857 87 + . . scaffold43366 WUBlastX LTR_DIRS 83669 83932 78 + . . scaffold43366 WUBlastX DNA_IS4EU 85028 85759 410 + . . scaffold43366 WUBlastX DNA_IS4EU 86296 87033 172 - . . scaffold43366 WUBlastX DNA_IS4EU 88218 88463 52 - . . scaffold43366 TRF Tandem_Repeat 93432 93467 56 + . . scaffold43366 TRF Tandem_Repeat 93681 93707 54 + . . scaffold43366 GLEAN promoter 108419 109418 1 + . ID=CGI_10009985; scaffold43366 GLEAN mRNA 109419 109835 1 + . ID=CGI_10009985; scaffold43366 TRF Tandem_Repeat 116765 116815 52 + . . scaffold43366 GLEAN mRNA 117622 123822 0.702281 - . ID=CGI_10009986; scaffold43366 GLEAN promoter 123823 124822 0.702281 - . ID=CGI_10009986; scaffold43366 GLEAN mRNA 124681 137232 0.43538 - . ID=CGI_10009987; scaffold43366 GLEAN promoter 137233 138232 0.43538 - . ID=CGI_10009987; scaffold43366 GLEAN mRNA 145104 160410 0.999676 - . ID=CGI_10009988; scaffold43366 GLEAN promoter 160411 161410 0.999676 - . ID=CGI_10009988; scaffold43366 GLEAN mRNA 160823 166600 0.660632 - . ID=CGI_10009989; scaffold43366 TRF Tandem_Repeat 161620 161664 90 + . . scaffold43366 GLEAN promoter 166601 167600 0.660632 - . ID=CGI_10009989; scaffold43366 GLEAN mRNA 166859 167170 0.748974 - . ID=CGI_10009990; scaffold43366 GLEAN promoter 167171 168170 0.748974 - . ID=CGI_10009990; scaffold43366 TRF Tandem_Repeat 167861 167913 99 + . . scaffold43366 TRF Tandem_Repeat 169906 170972 1393 + . . scaffold43366 GLEAN mRNA 176228 184764 1 - . ID=CGI_10009991; scaffold43366 GLEAN promoter 184765 185764 1 - . ID=CGI_10009991; scaffold43366 GLEAN promoter 190802 191801 0.799592 + . ID=CGI_10009992; scaffold43366 GLEAN mRNA 191802 202976 0.799592 + . ID=CGI_10009992; scaffold43366 GLEAN mRNA 195064 211680 0.801348 - . ID=CGI_10009993; scaffold43366 TRF Tandem_Repeat 204663 204736 148 + . . scaffold43366 TRF Tandem_Repeat 204673 204733 59 + . . scaffold43366 TRF Tandem_Repeat 208896 208986 146 + . . scaffold43366 TRF Tandem_Repeat 208952 209041 99 + . . scaffold43366 TRF Tandem_Repeat 210516 210622 142 + . . scaffold43366 GLEAN promoter 211681 212680 0.801348 - . ID=CGI_10009993; scaffold43366 TRF Tandem_Repeat 212895 212977 66 + . . scaffold43366 TRF Tandem_Repeat 212903 212963 51 + . . scaffold43366 TRF Tandem_Repeat 212930 213035 81 + . . scaffold43366 TRF Tandem_Repeat 218522 218559 67 + . . scaffold43366 TRF Tandem_Repeat 223261 223297 74 + . . scaffold43388 WUBlastX LTR_Gypsy 7786 8415 109 - . . scaffold43388 WUBlastX LTR_Gypsy 7990 8412 112 - . . scaffold43388 WUBlastX LTR_Gypsy 8122 8544 146 - . . scaffold43388 TRF Tandem_Repeat 26770 26810 82 + . . scaffold43388 TRF Tandem_Repeat 27224 27253 60 + . . scaffold43388 TRF Tandem_Repeat 31073 31097 50 + . . scaffold43388 GLEAN mRNA 33327 49740 0.990125 - . ID=CGI_10010116; scaffold43388 TRF Tandem_Repeat 33674 33819 69 + . . scaffold43388 TRF Tandem_Repeat 35731 35794 128 + . . scaffold43388 GLEAN promoter 49741 50740 0.990125 - . ID=CGI_10010116; scaffold43388 TRF Tandem_Repeat 50884 50936 61 + . . scaffold43388 TRF Tandem_Repeat 52677 52722 74 + . . scaffold43388 TRF Tandem_Repeat 53218 53256 78 + . . scaffold43388 TRF Tandem_Repeat 55653 55733 99 + . . scaffold43388 GLEAN mRNA 60151 68249 0.544826 - . ID=CGI_10010117; scaffold43388 TRF Tandem_Repeat 63094 63147 108 + . . scaffold43388 GLEAN promoter 68250 69249 0.544826 - . ID=CGI_10010117; scaffold43388 GLEAN mRNA 68707 69180 1 - . ID=CGI_10010118; scaffold43388 GLEAN promoter 69181 70180 1 - . ID=CGI_10010118; scaffold43388 TRF Tandem_Repeat 78043 78156 138 + . . scaffold43388 TRF Tandem_Repeat 82637 83669 1467 + . . scaffold43388 TRF Tandem_Repeat 99858 99937 106 + . . scaffold43388 TRF Tandem_Repeat 111333 111377 90 + . . scaffold43388 TRF Tandem_Repeat 111375 111409 70 + . . scaffold43388 TRF Tandem_Repeat 135134 135999 1041 + . . scaffold43388 TRF Tandem_Repeat 135166 135928 1030 + . . scaffold43388 TRF Tandem_Repeat 146485 146717 143 + . . scaffold43388 TRF Tandem_Repeat 146485 146715 162 + . . scaffold43388 TRF Tandem_Repeat 148080 148881 1159 + . . scaffold43388 TRF Tandem_Repeat 148886 148955 68 + . . scaffold43388 TRF Tandem_Repeat 148889 148955 89 + . . scaffold43388 TRF Tandem_Repeat 148893 148947 74 + . . scaffold43388 TRF Tandem_Repeat 152909 153147 264 + . . scaffold43388 WUBlastX LINE_L1-Tx1 153538 155166 493 - . . scaffold43388 WUBlastX LINE_L1 155172 155477 105 - . . scaffold43388 WUBlastX LINE_L1-Tx1 155184 155420 126 - . . scaffold43388 WUBlastX LINE_L1-Tx1 155467 155883 132 - . . scaffold43388 WUBlastX LINE_L1 155530 155880 277 - . . scaffold43388 WUBlastX LINE_L1-Tx1 155545 155964 167 - . . scaffold43388 WUBlastX LINE_L1-Tx1 155581 155877 304 - . . scaffold43388 WUBlastX LINE_L1-Tx1 156857 157375 53 - . . scaffold43388 WUBlastX LINE_L1-Tx1 156938 157423 272 - . . scaffold43388 WUBlastX LINE_L1-Tx1 157871 159055 438 - . . scaffold43388 WUBlastX LINE_L2 159495 160061 90 - . . scaffold43388 TRF Tandem_Repeat 162772 163049 340 + . . scaffold43388 TRF Tandem_Repeat 162793 163052 295 + . . scaffold43388 TRF Tandem_Repeat 170521 171381 1115 + . . scaffold43388 TRF Tandem_Repeat 178884 178927 52 + . . scaffold43388 GLEAN promoter 184303 185302 0.999982 + . ID=CGI_10010119; scaffold43388 GLEAN mRNA 185303 185551 0.999982 + . ID=CGI_10010119; scaffold43388 GLEAN promoter 186696 187695 0.772125 + . ID=CGI_10010120; scaffold43388 GLEAN mRNA 187696 188514 0.772125 + . ID=CGI_10010120; scaffold43388 TRF Tandem_Repeat 191977 192023 76 + . . scaffold43388 TRF Tandem_Repeat 194663 194698 72 + . . scaffold43388 TRF Tandem_Repeat 195081 195131 77 + . . scaffold43388 TRF Tandem_Repeat 195336 195374 69 + . . scaffold43388 GLEAN mRNA 204233 233793 0.363541 - . ID=CGI_10010121; scaffold43388 TRF Tandem_Repeat 211909 211946 67 + . . scaffold43388 TRF Tandem_Repeat 212272 212344 146 + . . scaffold43388 WUBlastX DNA_IS4EU 214456 214974 58 + . . scaffold43388 WUBlastX DNA_IS4EU 214660 214974 98 + . . scaffold43388 WUBlastX DNA_IS4EU 217320 218186 100 + . . scaffold43388 WUBlastX DNA_Kolobok-IS4 217416 218144 131 + . . scaffold43388 WUBlastX DNA_IS4EU 218291 219073 414 - . . scaffold43388 WUBlastX DNA_IS4EU 219717 219797 27 - . . scaffold43388 WUBlastX LINE_CR1 221544 222995 558 + . . scaffold43388 WUBlastX LINE_CR1 222970 223680 541 + . . scaffold43388 WUBlastX LINE_CR1 223676 224806 904 + . . scaffold43388 WUBlastX DNA_IS4EU 225812 225952 42 - . . scaffold43388 WUBlastX DNA_IS4EU 225842 225991 70 - . . scaffold43388 WUBlastX DNA_IS4EU 226002 226118 71 - . . scaffold43388 WUBlastX DNA_IS4EU 226436 227023 72 - . . scaffold43388 WUBlastX DNA_IS4EU 226517 226942 175 - . . scaffold43388 WUBlastX LINE_L1-Tx1 229844 229906 20 + . . scaffold43388 WUBlastX LINE_CR1 230520 231257 24 + . . scaffold43388 WUBlastX LINE_L2 230661 231284 115 + . . scaffold43388 WUBlastX LINE_RTE-X 230814 231272 271 + . . scaffold43388 WUBlastX LINE_RTE-X 230904 232643 371 + . . scaffold43388 TRF Tandem_Repeat 232750 233007 435 + . . scaffold43388 GLEAN promoter 233794 234793 0.363541 - . ID=CGI_10010121; scaffold43388 TRF Tandem_Repeat 233969 234049 137 + . . scaffold43388 WUBlastX LINE_L1 238243 238527 62 + . . scaffold43388 WUBlastX LINE_L1 238258 238659 60 + . . scaffold43388 WUBlastX LINE_L2 238643 238936 52 + . . scaffold43388 WUBlastX LINE_L2 238724 238924 64 + . . scaffold43388 WUBlastX LINE_CR1-L2 239482 239535 33 + . . scaffold43388 WUBlastX LINE_L2 239653 240570 284 + . . scaffold43388 WUBlastX LINE_L2 240563 240793 136 + . . scaffold43388 WUBlastX LINE_L2 240611 240823 141 + . . scaffold43388 WUBlastX LINE_L2 240834 241091 145 + . . scaffold43388 WUBlastX LINE_L2 241087 241497 239 + . . scaffold43388 WUBlastX LINE_CR1-L2 241093 241584 163 + . . scaffold43388 WUBlastX LINE_L2 241512 241685 52 + . . scaffold43388 WUBlastX LINE_L2 241694 241933 30 + . . scaffold43388 GLEAN mRNA 245765 246061 0.836209 - . ID=CGI_10010122; scaffold43388 GLEAN promoter 246062 247061 0.836209 - . ID=CGI_10010122; scaffold43388 TRF Tandem_Repeat 246753 246812 106 + . . scaffold43388 TRF Tandem_Repeat 246754 246830 86 + . . scaffold43388 WUBlastX LINE_L1-Tx1 252145 252951 210 + . . scaffold43388 WUBlastX LINE_L1 253049 253564 31 + . . scaffold43388 WUBlastX LINE_L1 253214 253387 35 + . . scaffold43388 WUBlastX LINE_L1 253259 253387 38 + . . scaffold43396 TRF Tandem_Repeat 3232 3610 403 + . . scaffold43396 TRF Tandem_Repeat 3232 3522 408 + . . scaffold43396 TRF Tandem_Repeat 4177 4257 144 + . . scaffold43396 GLEAN mRNA 6147 11803 0.889891 - . ID=CGI_10010142; scaffold43396 GLEAN promoter 11804 12803 0.889891 - . ID=CGI_10010142; scaffold43396 TRF Tandem_Repeat 13545 13576 64 + . . scaffold43396 GLEAN promoter 13707 14706 0.518883 + . ID=CGI_10010143; scaffold43396 TRF Tandem_Repeat 14558 14595 51 + . . scaffold43396 TRF Tandem_Repeat 14679 15104 388 + . . scaffold43396 GLEAN mRNA 14707 15126 0.518883 + . ID=CGI_10010143; scaffold43396 TRF Tandem_Repeat 22878 22953 152 + . . scaffold43396 TRF Tandem_Repeat 24130 24222 152 + . . scaffold43396 TRF Tandem_Repeat 27202 27270 138 + . . scaffold43396 TRF Tandem_Repeat 27641 27669 58 + . . scaffold43396 TRF Tandem_Repeat 28290 28349 120 + . . scaffold43396 TRF Tandem_Repeat 29433 29486 99 + . . scaffold43396 GLEAN mRNA 36018 61680 0.607491 - . ID=CGI_10010144; scaffold43396 TRF Tandem_Repeat 38422 39045 776 + . . scaffold43396 TRF Tandem_Repeat 44570 44612 86 + . . scaffold43396 TRF Tandem_Repeat 50648 50701 108 + . . scaffold43396 TRF Tandem_Repeat 58431 58537 119 + . . scaffold43396 TRF Tandem_Repeat 58575 58600 52 + . . scaffold43396 TRF Tandem_Repeat 59646 59744 153 + . . scaffold43396 GLEAN promoter 61681 62680 0.607491 - . ID=CGI_10010144; scaffold43396 GLEAN mRNA 64783 70858 0.988168 - . ID=CGI_10010145; scaffold43396 TRF Tandem_Repeat 65070 65103 68 + . . scaffold43396 GLEAN promoter 70859 71858 0.988168 - . ID=CGI_10010145; scaffold43396 TRF Tandem_Repeat 74625 74816 240 + . . scaffold43396 TRF Tandem_Repeat 82328 82411 96 + . . scaffold43396 TRF Tandem_Repeat 82337 82420 95 + . . scaffold43396 TRF Tandem_Repeat 108499 108529 62 + . . scaffold43396 TRF Tandem_Repeat 111509 111550 50 + . . scaffold43396 WUBlastX DNA_Crypton 113916 114305 34 + . . scaffold43396 WUBlastX DNA_Crypton 114317 114796 152 + . . scaffold43396 GLEAN promoter 120888 121887 0.648527 + . ID=CGI_10010146; scaffold43396 GLEAN mRNA 121888 137669 0.648527 + . ID=CGI_10010146; scaffold43396 GLEAN mRNA 142147 151830 0.567894 - . ID=CGI_10010147; scaffold43396 GLEAN promoter 142567 143566 0.651135 + . ID=CGI_10010148; scaffold43396 GLEAN mRNA 143567 162622 0.651135 + . ID=CGI_10010148; scaffold43396 GLEAN promoter 151831 152830 0.567894 - . ID=CGI_10010147; scaffold43396 GLEAN mRNA 163071 166611 0.957032 - . ID=CGI_10010149; scaffold43396 TRF Tandem_Repeat 164404 164467 71 + . . scaffold43396 GLEAN promoter 166612 167611 0.957032 - . ID=CGI_10010149; scaffold43396 GLEAN promoter 167401 168400 0.999996 + . ID=CGI_10010150; scaffold43396 GLEAN mRNA 168401 199028 0.999996 + . ID=CGI_10010150; scaffold43396 TRF Tandem_Repeat 176432 176458 54 + . . scaffold43396 TRF Tandem_Repeat 184102 184155 108 + . . scaffold43396 WUBlastX LINE_Penelope 186391 186744 75 + . . scaffold43396 WUBlastX LINE_Penelope 186430 186702 102 + . . scaffold43396 WUBlastX LINE_Penelope 186734 186841 44 + . . scaffold43396 WUBlastX LINE_Penelope 186734 186937 22 + . . scaffold43396 TRF Tandem_Repeat 188412 188545 71 + . . scaffold43396 WUBlastX DNA_Harbinger 189214 189837 25 + . . scaffold43396 WUBlastX DNA_Harbinger 189268 189459 61 + . . scaffold43396 TRF Tandem_Repeat 194489 194599 82 + . . scaffold43396 TRF Tandem_Repeat 195437 195629 110 + . . scaffold43396 TRF Tandem_Repeat 195437 195658 123 + . . scaffold43396 TRF Tandem_Repeat 195691 195924 106 + . . scaffold43396 TRF Tandem_Repeat 195757 195936 129 + . . scaffold43396 TRF Tandem_Repeat 195768 195924 125 + . . scaffold43396 TRF Tandem_Repeat 195804 195924 90 + . . scaffold43396 GLEAN promoter 198044 199043 0.999372 + . ID=CGI_10010151; scaffold43396 GLEAN mRNA 199044 199301 0.999372 + . ID=CGI_10010151; scaffold43396 WUBlastX LINE_RTE-BovB 199348 199839 96 + . . scaffold43396 WUBlastX LINE_RTE-BovB 199408 199650 101 + . . scaffold43396 GLEAN mRNA 201874 211150 0.441555 - . ID=CGI_10010152; scaffold43396 GLEAN promoter 211151 212150 0.441555 - . ID=CGI_10010152; scaffold43396 TRF Tandem_Repeat 213600 213761 236 + . . scaffold43396 GLEAN mRNA 216615 218045 0.933687 - . ID=CGI_10010153; scaffold43396 GLEAN promoter 218046 219045 0.933687 - . ID=CGI_10010153; scaffold43396 TRF Tandem_Repeat 219054 219082 58 + . . scaffold43396 GLEAN mRNA 220123 221031 0.999995 - . ID=CGI_10010154; scaffold43396 TRF Tandem_Repeat 220452 220510 82 + . . scaffold43396 GLEAN promoter 221032 222031 0.999995 - . ID=CGI_10010154; scaffold43396 TRF Tandem_Repeat 221078 221116 78 + . . scaffold43396 GLEAN mRNA 221183 221546 0.999995 - . ID=CGI_10010155; scaffold43396 GLEAN promoter 221547 222546 0.999995 - . ID=CGI_10010155; scaffold43396 TRF Tandem_Repeat 223774 223807 50 + . . scaffold43396 WUBlastX LINE_CR1-L2 224906 225250 77 + . . scaffold43396 GLEAN promoter 228822 229821 0.993815 + . ID=CGI_10010156; scaffold43396 GLEAN mRNA 229822 241717 0.993815 + . ID=CGI_10010156; scaffold43396 TRF Tandem_Repeat 233652 233910 342 + . . scaffold43396 WUBlastX LTR_Ngaro 235006 235293 137 - . . scaffold43396 WUBlastX LTR_Ngaro 235006 235404 60 - . . scaffold43396 WUBlastX LTR_Ngaro 235412 235585 24 - . . scaffold43396 WUBlastX LTR_Ngaro 235445 235765 100 - . . scaffold43396 WUBlastX LTR_Ngaro 235909 236871 394 - . . scaffold43396 WUBlastX LTR_Ngaro 236876 237421 334 - . . scaffold43396 WUBlastX LTR_Ngaro 237754 237834 56 - . . scaffold43396 TRF Tandem_Repeat 238566 238794 178 + . . scaffold43396 GLEAN mRNA 244017 249187 1 - . ID=CGI_10010157; scaffold43396 GLEAN promoter 248506 249505 1 + . ID=CGI_10010158; scaffold43396 GLEAN promoter 249188 250187 1 - . ID=CGI_10010157; scaffold43396 GLEAN mRNA 249506 252850 1 + . ID=CGI_10010158; scaffold43406 GLEAN mRNA 558 4434 1 - . ID=CGI_10010204; scaffold43406 GLEAN promoter 4435 5434 1 - . ID=CGI_10010204; scaffold43406 GLEAN mRNA 6932 10444 1 - . ID=CGI_10010205; scaffold43406 GLEAN promoter 10445 11444 1 - . ID=CGI_10010205; scaffold43406 GLEAN promoter 21183 22182 0.99909 + . ID=CGI_10010206; scaffold43406 GLEAN mRNA 22183 27515 0.99909 + . ID=CGI_10010206; scaffold43406 TRF Tandem_Repeat 23375 23462 108 + . . scaffold43406 TRF Tandem_Repeat 24854 25418 826 + . . scaffold43406 TRF Tandem_Repeat 31112 31161 100 + . . scaffold43406 GLEAN promoter 31489 32488 1 + . ID=CGI_10010207; scaffold43406 GLEAN mRNA 32489 34168 1 + . ID=CGI_10010207; scaffold43406 GLEAN promoter 34935 35934 0.941684 + . ID=CGI_10010208; scaffold43406 GLEAN mRNA 35935 37899 0.941684 + . ID=CGI_10010208; scaffold43406 TRF Tandem_Repeat 37226 37274 71 + . . scaffold43406 TRF Tandem_Repeat 39359 39406 51 + . . scaffold43406 TRF Tandem_Repeat 39364 39406 50 + . . scaffold43406 TRF Tandem_Repeat 39774 40907 1775 + . . scaffold43406 GLEAN mRNA 43968 58171 0.999668 - . ID=CGI_10010209; scaffold43406 GLEAN promoter 58172 59171 0.999668 - . ID=CGI_10010209; scaffold43406 TRF Tandem_Repeat 62344 62391 71 + . . scaffold43406 WUBlastX DNA_IS4EU 70187 70639 156 + . . scaffold43406 GLEAN promoter 80497 81496 0.998098 + . ID=CGI_10010210; scaffold43406 GLEAN mRNA 81497 87547 0.998098 + . ID=CGI_10010210; scaffold43406 WUBlastX LINE_RTE-BovB 82157 82549 243 - . . scaffold43406 WUBlastX LINE_RTE-BovB 82202 82612 68 - . . scaffold43406 TRF Tandem_Repeat 92435 92467 66 + . . scaffold43406 TRF Tandem_Repeat 103191 103228 60 + . . scaffold43406 GLEAN promoter 106083 107082 0.632672 + . ID=CGI_10010211; scaffold43406 GLEAN mRNA 107083 111128 0.632672 + . ID=CGI_10010211; scaffold43406 WUBlastX LTR_Gypsy 112447 116058 2091 + . . scaffold43406 WUBlastX LTR_ERV1 115210 116277 137 + . . scaffold43406 TRF Tandem_Repeat 122900 122934 52 + . . scaffold43406 TRF Tandem_Repeat 127433 127476 88 + . . scaffold43406 TRF Tandem_Repeat 138915 139002 135 + . . scaffold43406 TRF Tandem_Repeat 139309 139405 72 + . . scaffold43406 WUBlastX LTR_Gypsy 148030 148599 33 + . . scaffold43406 WUBlastX LTR_ERV1 148354 148851 58 + . . scaffold43406 GLEAN promoter 148831 149830 0.986655 + . ID=CGI_10010212; scaffold43406 WUBlastX LTR_ERV1 149299 149481 44 + . . scaffold43406 WUBlastX LTR_ERV1 149305 149532 22 + . . scaffold43406 WUBlastX LTR_ERVK 149440 149556 21 + . . scaffold43406 GLEAN mRNA 149831 150163 0.986655 + . ID=CGI_10010212; scaffold43406 WUBlastX LTR_Gypsy 150005 150106 25 + . . scaffold43406 GLEAN mRNA 150483 153616 0.999208 - . ID=CGI_10010213; scaffold43406 GLEAN promoter 153617 154616 0.999208 - . ID=CGI_10010213; scaffold43406 GLEAN promoter 159758 160757 0.986179 + . ID=CGI_10010214; scaffold43406 GLEAN mRNA 160758 182618 0.986179 + . ID=CGI_10010214; scaffold43406 TRF Tandem_Repeat 165620 165654 52 + . . scaffold43406 TRF Tandem_Repeat 174902 174926 50 + . . scaffold43406 GLEAN promoter 185501 186500 0.983877 + . ID=CGI_10010215; scaffold43406 GLEAN mRNA 186501 206789 0.983877 + . ID=CGI_10010215; scaffold43406 TRF Tandem_Repeat 189507 189545 60 + . . scaffold43406 TRF Tandem_Repeat 192432 192459 56 + . . scaffold43406 TRF Tandem_Repeat 213777 213824 96 + . . scaffold43406 TRF Tandem_Repeat 215211 215254 88 + . . scaffold43406 TRF Tandem_Repeat 227363 227414 86 + . . scaffold43406 TRF Tandem_Repeat 227363 227420 73 + . . scaffold43406 WUBlastX DNA_Harbinger 250256 250477 50 + . . scaffold43406 WUBlastX DNA_Harbinger 250458 250682 160 + . . scaffold43406 WUBlastX DNA_Harbinger 250663 251418 685 + . . scaffold43406 WUBlastX DNA_Harbinger 251418 251501 52 + . . scaffold43406 WUBlastX DNA_Harbinger 252079 252600 73 - . . scaffold43406 WUBlastX DNA_Harbinger 252947 253306 46 - . . scaffold43406 TRF Tandem_Repeat 256312 256350 78 + . . scaffold43426 GLEAN mRNA 1665 14977 0.993769 - . ID=CGI_10010295; scaffold43426 GLEAN promoter 14978 15977 0.993769 - . ID=CGI_10010295; scaffold43426 GLEAN promoter 18752 19751 0.99967 + . ID=CGI_10010296; scaffold43426 GLEAN mRNA 19752 42197 0.99967 + . ID=CGI_10010296; scaffold43426 TRF Tandem_Repeat 34632 35464 1211 + . . scaffold43426 GLEAN promoter 41606 42605 0.999995 + . ID=CGI_10010297; scaffold43426 GLEAN mRNA 42606 44586 0.999995 + . ID=CGI_10010297; scaffold43426 TRF Tandem_Repeat 43386 43487 64 + . . scaffold43426 GLEAN promoter 47340 48339 0.999996 + . ID=CGI_10010298; scaffold43426 GLEAN mRNA 48340 51291 0.999996 + . ID=CGI_10010298; scaffold43426 GLEAN mRNA 55742 60955 0.993584 - . ID=CGI_10010299; scaffold43426 GLEAN promoter 60956 61955 0.993584 - . ID=CGI_10010299; scaffold43426 TRF Tandem_Repeat 61400 61428 51 + . . scaffold43426 GLEAN mRNA 68346 70274 0.499919 - . ID=CGI_10010300; scaffold43426 GLEAN promoter 70275 71274 0.499919 - . ID=CGI_10010300; scaffold43426 TRF Tandem_Repeat 86511 86539 58 + . . scaffold43426 TRF Tandem_Repeat 96910 96944 70 + . . scaffold43426 GLEAN mRNA 102636 106060 0.77613 - . ID=CGI_10010301; scaffold43426 GLEAN promoter 106061 107060 0.77613 - . ID=CGI_10010301; scaffold43426 WUBlastX DNA_hAT-Tip100 120341 120544 58 - . . scaffold43426 GLEAN mRNA 126313 129350 0.835996 - . ID=CGI_10010302; scaffold43426 GLEAN promoter 129351 130350 0.835996 - . ID=CGI_10010302; scaffold43426 TRF Tandem_Repeat 132000 132096 57 + . . scaffold43426 TRF Tandem_Repeat 132000 132100 73 + . . scaffold43426 TRF Tandem_Repeat 134281 134322 84 + . . scaffold43426 WUBlastX LINE_Penelope 134777 135133 103 - . . scaffold43426 WUBlastX LINE_L1-Tx1 137782 137958 50 - . . scaffold43426 WUBlastX LINE_L1 137945 138160 36 - . . scaffold43426 GLEAN mRNA 138617 138931 0.866259 - . ID=CGI_10010303; scaffold43426 GLEAN promoter 138932 139931 0.866259 - . ID=CGI_10010303; scaffold43426 WUBlastX LINE_L1 142906 143205 34 - . . scaffold43426 WUBlastX LINE_L1-Tx1 142966 143193 72 - . . scaffold43426 WUBlastX LINE_L1 142969 143235 50 - . . scaffold43426 WUBlastX LINE_L1-Tx1 143201 143269 33 - . . scaffold43426 WUBlastX LINE_L1-Tx1 143271 143393 55 - . . scaffold43426 WUBlastX LINE_L1-Tx1 143333 143605 54 - . . scaffold43426 WUBlastX LINE_L1 143450 143617 60 - . . scaffold43426 WUBlastX LINE_L1-Tx1 143477 143617 81 - . . scaffold43426 GLEAN mRNA 144400 144714 0.99962 - . ID=CGI_10010304; scaffold43426 GLEAN promoter 144715 145714 0.99962 - . ID=CGI_10010304; scaffold43426 WUBlastX LINE_RTE-BovB 147102 147434 59 + . . scaffold43426 WUBlastX LINE_RTE-X 147156 147485 142 + . . scaffold43426 WUBlastX LINE_RTE-X 147156 147614 35 + . . scaffold43426 GLEAN mRNA 169878 176180 1 - . ID=CGI_10010305; scaffold43426 GLEAN promoter 176181 177180 1 - . ID=CGI_10010305; scaffold43426 GLEAN promoter 177429 178428 1 + . ID=CGI_10010306; scaffold43426 GLEAN mRNA 178429 182007 1 + . ID=CGI_10010306; scaffold43426 GLEAN mRNA 180321 199359 0.99935 - . ID=CGI_10010307; scaffold43426 TRF Tandem_Repeat 182530 182588 88 + . . scaffold43426 GLEAN promoter 191595 192594 1 + . ID=CGI_10010308; scaffold43426 GLEAN mRNA 192595 199003 1 + . ID=CGI_10010308; scaffold43426 GLEAN promoter 199360 200359 0.99935 - . ID=CGI_10010307; scaffold43426 GLEAN promoter 202392 203391 0.650997 + . ID=CGI_10010309; scaffold43426 GLEAN mRNA 203392 215215 0.650997 + . ID=CGI_10010309; scaffold43426 GLEAN mRNA 203779 209630 1 - . ID=CGI_10010310; scaffold43426 GLEAN promoter 209631 210630 1 - . ID=CGI_10010310; scaffold43426 GLEAN mRNA 209869 233085 0.989767 - . ID=CGI_10010311; scaffold43426 GLEAN promoter 214396 215395 0.866433 + . ID=CGI_10010312; scaffold43426 GLEAN mRNA 215396 216073 0.866433 + . ID=CGI_10010312; scaffold43426 GLEAN promoter 217287 218286 1 + . ID=CGI_10010313; scaffold43426 TRF Tandem_Repeat 217861 217931 72 + . . scaffold43426 TRF Tandem_Repeat 217863 217919 50 + . . scaffold43426 GLEAN mRNA 218287 223397 1 + . ID=CGI_10010313; scaffold43426 GLEAN promoter 232048 233047 1 + . ID=CGI_10010314; scaffold43426 GLEAN mRNA 233048 234936 1 + . ID=CGI_10010314; scaffold43426 GLEAN promoter 233086 234085 0.989767 - . ID=CGI_10010311; scaffold43426 TRF Tandem_Repeat 239361 239432 144 + . . scaffold43426 TRF Tandem_Repeat 243712 243737 52 + . . scaffold43426 TRF Tandem_Repeat 243737 243770 68 + . . scaffold43426 GLEAN promoter 244500 245499 1 + . ID=CGI_10010315; scaffold43426 GLEAN mRNA 245500 248135 1 + . ID=CGI_10010315; scaffold43426 GLEAN promoter 250827 251826 1 + . ID=CGI_10010316; scaffold43426 GLEAN mRNA 251827 255988 1 + . ID=CGI_10010316; scaffold43426 GLEAN mRNA 258037 260724 1 - . ID=CGI_10010317; scaffold43426 GLEAN promoter 260725 260725 1 - . ID=CGI_10010317; scaffold43442 WUBlastX DNA_hAT-Tip100 1368 2522 195 + . . scaffold43442 WUBlastX DNA_hAT-Tip100 2533 2727 34 + . . scaffold43442 WUBlastX DNA_hAT-Tip100 2590 2754 36 + . . scaffold43442 WUBlastX DNA_hAT-Tip100 2748 2837 21 + . . scaffold43442 WUBlastX LINE_RTE-X 3387 3596 41 + . . scaffold43442 WUBlastX LINE_RTE-X 3507 3719 40 + . . scaffold43442 GLEAN promoter 6213 7212 1 + . ID=CGI_10010224; scaffold43442 GLEAN mRNA 7213 10558 1 + . ID=CGI_10010224; scaffold43442 GLEAN promoter 11443 12442 0.733264 + . ID=CGI_10010225; scaffold43442 GLEAN mRNA 12443 33732 0.733264 + . ID=CGI_10010225; scaffold43442 TRF Tandem_Repeat 14072 14158 138 + . . scaffold43442 TRF Tandem_Repeat 15134 15577 827 + . . scaffold43442 TRF Tandem_Repeat 15173 15565 437 + . . scaffold43442 GLEAN promoter 35919 36918 1 + . ID=CGI_10010226; scaffold43442 GLEAN mRNA 36919 37293 1 + . ID=CGI_10010226; scaffold43442 GLEAN promoter 38077 39076 0.999995 + . ID=CGI_10010227; scaffold43442 TRF Tandem_Repeat 38455 38572 103 + . . scaffold43442 GLEAN mRNA 39077 40116 0.999995 + . ID=CGI_10010227; scaffold43442 TRF Tandem_Repeat 41033 41417 191 + . . scaffold43442 TRF Tandem_Repeat 41034 41396 174 + . . scaffold43442 TRF Tandem_Repeat 41249 41417 168 + . . scaffold43442 TRF Tandem_Repeat 42471 42846 273 + . . scaffold43442 TRF Tandem_Repeat 42471 42848 261 + . . scaffold43442 TRF Tandem_Repeat 42484 42850 268 + . . scaffold43442 TRF Tandem_Repeat 45029 47548 4056 + . . scaffold43442 GLEAN promoter 49575 50574 0.996819 + . ID=CGI_10010229; scaffold43442 GLEAN mRNA 50575 52462 0.996819 + . ID=CGI_10010229; scaffold43442 GLEAN mRNA 53727 55689 0.777732 - . ID=CGI_10010230; scaffold43442 GLEAN promoter 54694 55693 0.777738 + . ID=CGI_10010231; scaffold43442 GLEAN promoter 55690 56689 0.777732 - . ID=CGI_10010230; scaffold43442 GLEAN mRNA 55694 57458 0.777738 + . ID=CGI_10010231; scaffold43442 TRF Tandem_Repeat 62396 62628 229 + . . scaffold43442 GLEAN mRNA 82794 101608 0.998384 - . ID=CGI_10010232; scaffold43442 GLEAN promoter 94703 95702 0.999473 + . ID=CGI_10010233; scaffold43442 GLEAN mRNA 95703 99547 0.999473 + . ID=CGI_10010233; scaffold43442 TRF Tandem_Repeat 96071 96152 82 + . . scaffold43442 TRF Tandem_Repeat 97066 97096 62 + . . scaffold43442 TRF Tandem_Repeat 98043 98105 126 + . . scaffold43442 GLEAN promoter 101260 102259 0.996671 + . ID=CGI_10010234; scaffold43442 GLEAN promoter 101609 102608 0.998384 - . ID=CGI_10010232; scaffold43442 GLEAN mRNA 102260 113491 0.996671 + . ID=CGI_10010234; scaffold43442 TRF Tandem_Repeat 102490 102552 117 + . . scaffold43442 TRF Tandem_Repeat 104142 104196 110 + . . scaffold43442 TRF Tandem_Repeat 107403 107435 50 + . . scaffold43442 GLEAN promoter 122654 123653 0.767652 + . ID=CGI_10010235; scaffold43442 GLEAN mRNA 123654 127305 0.767652 + . ID=CGI_10010235; scaffold43442 TRF Tandem_Repeat 125939 125981 86 + . . scaffold43442 GLEAN promoter 139117 140116 1 + . ID=CGI_10010236; scaffold43442 GLEAN mRNA 140117 144813 1 + . ID=CGI_10010236; scaffold43442 TRF Tandem_Repeat 142764 142789 52 + . . scaffold43442 TRF Tandem_Repeat 157803 157861 109 + . . scaffold43442 TRF Tandem_Repeat 158700 158729 60 + . . scaffold43442 WUBlastX DNA_TcMar-Fot1 160574 161158 384 + . . scaffold43442 WUBlastX DNA_TcMar-Fot1 161161 162429 462 + . . scaffold43442 TRF Tandem_Repeat 162605 162635 62 + . . scaffold43442 GLEAN promoter 163569 164568 1 + . ID=CGI_10010237; scaffold43442 GLEAN mRNA 164569 165816 1 + . ID=CGI_10010237; scaffold43442 GLEAN mRNA 170154 192018 0.999346 - . ID=CGI_10010238; scaffold43442 TRF Tandem_Repeat 182680 182706 54 + . . scaffold43442 TRF Tandem_Repeat 188797 189304 583 + . . scaffold43442 GLEAN promoter 192019 193018 0.999346 - . ID=CGI_10010238; scaffold43442 WUBlastX LINE_Penelope 230851 231195 250 - . . scaffold43442 WUBlastX LINE_Penelope 231195 232067 136 - . . scaffold43442 WUBlastX LINE_CR1-L2 234890 235273 28 - . . scaffold43442 TRF Tandem_Repeat 244704 244728 50 + . . scaffold43442 WUBlastX LINE_RTE-X 252365 254476 1421 - . . scaffold43442 WUBlastX LINE_RTE-X 254445 254609 28 - . . scaffold43442 WUBlastX LINE_I 254891 255004 32 - . . scaffold43442 WUBlastX LINE_I 254915 255004 34 - . . scaffold43442 TRF Tandem_Repeat 258840 258917 147 + . . scaffold43446 TRF Tandem_Repeat 2401 2460 93 + . . scaffold43446 TRF Tandem_Repeat 6020 6140 199 + . . scaffold43446 GLEAN mRNA 28144 30497 0.999676 - . ID=CGI_10010396; scaffold43446 GLEAN promoter 29421 30420 0.999988 + . ID=CGI_10010397; scaffold43446 GLEAN mRNA 30421 37301 0.999988 + . ID=CGI_10010397; scaffold43446 GLEAN promoter 30498 31497 0.999676 - . ID=CGI_10010396; scaffold43446 TRF Tandem_Repeat 34960 35006 67 + . . scaffold43446 WUBlastX LINE_RTE-X 41983 42321 36 - . . scaffold43446 WUBlastX LINE_RTE-X 42034 42345 68 - . . scaffold43446 WUBlastX LINE_RTE-X 42034 42564 55 - . . scaffold43446 TRF Tandem_Repeat 44459 44500 66 + . . scaffold43446 GLEAN promoter 79131 80130 0.999963 + . ID=CGI_10010398; scaffold43446 GLEAN mRNA 80131 91615 0.999963 + . ID=CGI_10010398; scaffold43446 TRF Tandem_Repeat 86815 86868 108 + . . scaffold43446 TRF Tandem_Repeat 93733 93785 106 + . . scaffold43446 TRF Tandem_Repeat 99615 100388 919 + . . scaffold43446 TRF Tandem_Repeat 100122 100219 58 + . . scaffold43446 TRF Tandem_Repeat 101549 101596 96 + . . scaffold43446 TRF Tandem_Repeat 101749 101775 54 + . . scaffold43446 TRF Tandem_Repeat 117215 117367 222 + . . scaffold43446 TRF Tandem_Repeat 117215 117392 176 + . . scaffold43446 WUBlastX LINE_L1-Tx1 125371 125565 37 + . . scaffold43446 WUBlastX LINE_CR1 125480 126046 61 + . . scaffold43446 WUBlastX LINE_L1-Tx1 126754 127359 186 + . . scaffold43446 GLEAN promoter 126759 127758 0.626793 + . ID=CGI_10010399; scaffold43446 GLEAN mRNA 127759 130645 0.626793 + . ID=CGI_10010399; scaffold43446 GLEAN promoter 131102 132101 0.935332 + . ID=CGI_10010400; scaffold43446 GLEAN mRNA 132102 135366 0.935332 + . ID=CGI_10010400; scaffold43446 TRF Tandem_Repeat 137535 138149 945 + . . scaffold43446 WUBlastX LINE_RTE-X 138295 138444 56 - . . scaffold43446 GLEAN mRNA 138693 140528 0.999998 - . ID=CGI_10010401; scaffold43446 GLEAN promoter 139870 140869 0.644171 + . ID=CGI_10010402; scaffold43446 GLEAN promoter 140529 141528 0.999998 - . ID=CGI_10010401; scaffold43446 GLEAN mRNA 140870 151291 0.644171 + . ID=CGI_10010402; scaffold43446 TRF Tandem_Repeat 142271 142416 138 + . . scaffold43446 TRF Tandem_Repeat 142286 142406 163 + . . scaffold43446 TRF Tandem_Repeat 142931 142966 58 + . . scaffold43446 GLEAN mRNA 154155 168433 0.907649 - . ID=CGI_10010403; scaffold43446 WUBlastX LINE_Rex-Babar 161837 162007 49 + . . scaffold43446 WUBlastX LINE_CR1 161921 163021 188 + . . scaffold43446 WUBlastX LINE_CR1 162476 163021 189 + . . scaffold43446 WUBlastX LINE_CR1 163039 163227 55 + . . scaffold43446 WUBlastX LINE_CR1 163235 163363 41 + . . scaffold43446 WUBlastX LINE_CR1 163235 163330 48 + . . scaffold43446 GLEAN promoter 168434 169433 0.907649 - . ID=CGI_10010403; scaffold43446 WUBlastX LTR_Gypsy-Troyk 171727 172050 86 - . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 171727 171927 88 - . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 172044 172202 42 - . . scaffold43446 WUBlastX LTR_Gypsy 172113 172202 45 - . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 172235 172624 29 - . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 172292 172426 32 - . . scaffold43446 WUBlastX LTR_Gypsy 172645 172905 74 - . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 172741 173085 154 - . . scaffold43446 WUBlastX LTR_Gypsy-Troyk 173141 173344 86 - . . scaffold43446 TRF Tandem_Repeat 174333 174366 68 + . . scaffold43446 GLEAN mRNA 175111 204349 0.996568 - . ID=CGI_10010404; scaffold43446 TRF Tandem_Repeat 181312 181434 85 + . . scaffold43446 TRF Tandem_Repeat 183641 183683 86 + . . scaffold43446 TRF Tandem_Repeat 186252 186308 96 + . . scaffold43446 WUBlastX LINE_RTE-X 187899 188378 24 + . . scaffold43446 WUBlastX LINE_RTE-X 188416 188535 24 + . . scaffold43446 TRF Tandem_Repeat 196921 196971 57 + . . scaffold43446 WUBlastX LINE_CR1 200177 201655 132 + . . scaffold43446 WUBlastX LINE_RTE-X 200621 202603 878 + . . scaffold43446 GLEAN promoter 202771 203770 0.72876 + . ID=CGI_10010405; scaffold43446 GLEAN mRNA 203771 208020 0.72876 + . ID=CGI_10010405; scaffold43446 GLEAN promoter 204350 205349 0.996568 - . ID=CGI_10010404; scaffold43446 GLEAN promoter 207060 208059 1 + . ID=CGI_10010406; scaffold43446 GLEAN mRNA 208060 210633 1 + . ID=CGI_10010406; scaffold43446 TRF Tandem_Repeat 210057 210223 307 + . . scaffold43446 GLEAN mRNA 213466 218774 0.593367 - . ID=CGI_10010407; scaffold43446 TRF Tandem_Repeat 214632 214664 66 + . . scaffold43446 GLEAN promoter 218775 219774 0.593367 - . ID=CGI_10010407; scaffold43446 GLEAN promoter 220314 221313 1 + . ID=CGI_10010408; scaffold43446 GLEAN mRNA 221314 229022 1 + . ID=CGI_10010408; scaffold43446 GLEAN promoter 228237 229236 0.999025 + . ID=CGI_10010409; scaffold43446 GLEAN mRNA 229237 241277 0.999025 + . ID=CGI_10010409; scaffold43446 GLEAN mRNA 232295 237181 1 - . ID=CGI_10010410; scaffold43446 TRF Tandem_Repeat 235203 235384 208 + . . scaffold43446 GLEAN promoter 237182 238181 1 - . ID=CGI_10010410; scaffold43446 GLEAN mRNA 242559 250044 0.999224 - . ID=CGI_10010411; scaffold43446 TRF Tandem_Repeat 244474 244514 55 + . . scaffold43446 TRF Tandem_Repeat 244755 245206 449 + . . scaffold43446 TRF Tandem_Repeat 244755 245092 419 + . . scaffold43446 GLEAN promoter 249125 250124 0.999372 + . ID=CGI_10010412; scaffold43446 GLEAN promoter 250045 251044 0.999224 - . ID=CGI_10010411; scaffold43446 GLEAN mRNA 250125 250382 0.999372 + . ID=CGI_10010412; scaffold43446 TRF Tandem_Repeat 251224 251311 167 + . . scaffold43446 GLEAN promoter 260236 261235 0.999372 + . ID=CGI_10010413; scaffold43446 GLEAN mRNA 261236 261433 0.999372 + . ID=CGI_10010413; scaffold43452 TRF Tandem_Repeat 594 619 52 + . . scaffold43452 GLEAN mRNA 2808 4227 0.889859 - . ID=CGI_10010479; scaffold43452 GLEAN promoter 4228 5227 0.889859 - . ID=CGI_10010479; scaffold43452 TRF Tandem_Repeat 11093 11148 63 + . . scaffold43452 TRF Tandem_Repeat 29223 29265 86 + . . scaffold43452 TRF Tandem_Repeat 33092 33134 86 + . . scaffold43452 TRF Tandem_Repeat 36000 36033 50 + . . scaffold43452 GLEAN promoter 46183 47182 0.937732 + . ID=CGI_10010480; scaffold43452 GLEAN mRNA 47183 72821 0.937732 + . ID=CGI_10010480; scaffold43452 GLEAN mRNA 84545 110859 1 - . ID=CGI_10010481; scaffold43452 TRF Tandem_Repeat 90881 90944 83 + . . scaffold43452 TRF Tandem_Repeat 92581 92629 91 + . . scaffold43452 TRF Tandem_Repeat 95394 97118 1994 + . . scaffold43452 GLEAN promoter 110860 111859 1 - . ID=CGI_10010481; scaffold43452 TRF Tandem_Repeat 115480 115534 110 + . . scaffold43452 TRF Tandem_Repeat 121110 121272 281 + . . scaffold43452 WUBlastX LINE_L2 134941 135540 200 + . . scaffold43452 GLEAN promoter 146634 147633 0.499173 + . ID=CGI_10010482; scaffold43452 GLEAN mRNA 147634 149397 0.499173 + . ID=CGI_10010482; scaffold43452 WUBlastX DNA_hAT 147634 148887 346 + . . scaffold43452 TRF Tandem_Repeat 151604 151645 84 + . . scaffold43452 WUBlastX LINE_CR1-L2 153251 153280 26 + . . scaffold43452 WUBlastX LINE_CR1-L2 153251 153310 24 + . . scaffold43452 WUBlastX LINE_CR1-L2 153303 153638 92 + . . scaffold43452 GLEAN mRNA 159017 168441 1 - . ID=CGI_10010483; scaffold43452 TRF Tandem_Repeat 162329 162361 66 + . . scaffold43452 TRF Tandem_Repeat 162664 162713 59 + . . scaffold43452 GLEAN promoter 168442 169441 1 - . ID=CGI_10010483; scaffold43452 GLEAN mRNA 177859 188569 0.998821 - . ID=CGI_10010484; scaffold43452 GLEAN promoter 180713 181712 0.999862 + . ID=CGI_10010485; scaffold43452 GLEAN mRNA 181713 192080 0.999862 + . ID=CGI_10010485; scaffold43452 TRF Tandem_Repeat 183917 183981 67 + . . scaffold43452 GLEAN promoter 188570 189569 0.998821 - . ID=CGI_10010484; scaffold43452 TRF Tandem_Repeat 190091 190123 57 + . . scaffold43452 GLEAN mRNA 196795 208008 0.432676 - . ID=CGI_10010486; scaffold43452 GLEAN promoter 207872 208871 0.998274 + . ID=CGI_10010487; scaffold43452 GLEAN promoter 208009 209008 0.432676 - . ID=CGI_10010486; scaffold43452 GLEAN mRNA 208872 212698 0.998274 + . ID=CGI_10010487; scaffold43452 GLEAN mRNA 214071 217411 1 - . ID=CGI_10010488; scaffold43452 GLEAN promoter 217412 218411 1 - . ID=CGI_10010488; scaffold43452 TRF Tandem_Repeat 220516 220549 68 + . . scaffold43452 GLEAN promoter 220863 221862 0.54407 + . ID=CGI_10010489; scaffold43452 GLEAN mRNA 221863 244317 0.54407 + . ID=CGI_10010489; scaffold43452 GLEAN mRNA 249476 254680 1 - . ID=CGI_10010490; scaffold43452 GLEAN promoter 254681 255680 1 - . ID=CGI_10010490; scaffold43452 TRF Tandem_Repeat 256426 256456 62 + . . scaffold43452 GLEAN mRNA 257969 260077 1 - . ID=CGI_10010491; scaffold43452 GLEAN promoter 260078 261077 1 - . ID=CGI_10010491; scaffold43494 TRF Tandem_Repeat 22512 22552 82 + . . scaffold43494 WUBlastX LINE_Penelope 23970 24395 91 - . . scaffold43494 WUBlastX LINE_Penelope 24057 24407 261 - . . scaffold43494 WUBlastX LINE_Penelope 24690 24905 31 + . . scaffold43494 TRF Tandem_Repeat 37403 37443 82 + . . scaffold43494 WUBlastX LTR_Ngaro 53763 53954 113 - . . scaffold43494 WUBlastX LTR_Ngaro 53763 54062 99 - . . scaffold43494 WUBlastX LTR_Ngaro 53986 54672 74 - . . scaffold43494 WUBlastX LTR_Ngaro 54627 56162 316 - . . scaffold43494 TRF Tandem_Repeat 62191 62276 147 + . . scaffold43494 WUBlastX LTR_Ngaro 62546 63232 123 + . . scaffold43494 WUBlastX LTR_Ngaro 62684 63232 124 + . . scaffold43494 WUBlastX DNA_TcMar-Tc1 75993 76430 105 - . . scaffold43494 WUBlastX DNA_TcMar-Tc1 76098 76649 95 - . . scaffold43494 WUBlastX DNA_TcMar-Tc1 76583 76801 23 - . . scaffold43494 WUBlastX DNA_TcMar-Tc1 76703 76804 24 - . . scaffold43494 TRF Tandem_Repeat 80621 80676 103 + . . scaffold43494 TRF Tandem_Repeat 94054 94086 66 + . . scaffold43494 TRF Tandem_Repeat 96240 96280 75 + . . scaffold43494 GLEAN mRNA 107685 130385 0.917945 - . ID=CGI_10010566; scaffold43494 TRF Tandem_Repeat 117114 117139 52 + . . scaffold43494 TRF Tandem_Repeat 117892 117976 97 + . . scaffold43494 TRF Tandem_Repeat 118225 118276 70 + . . scaffold43494 GLEAN promoter 130386 131385 0.917945 - . ID=CGI_10010566; scaffold43494 TRF Tandem_Repeat 131288 131338 102 + . . scaffold43494 GLEAN mRNA 134086 149390 1 - . ID=CGI_10010567; scaffold43494 GLEAN promoter 149391 150390 1 - . ID=CGI_10010567; scaffold43494 GLEAN promoter 149394 150393 0.993584 + . ID=CGI_10010568; scaffold43494 GLEAN mRNA 150394 163547 0.993584 + . ID=CGI_10010568; scaffold43494 GLEAN mRNA 165721 173727 0.675621 - . ID=CGI_10010569; scaffold43494 TRF Tandem_Repeat 166730 166851 244 + . . scaffold43494 GLEAN promoter 173728 174727 0.675621 - . ID=CGI_10010569; scaffold43494 GLEAN promoter 177340 178339 0.747146 + . ID=CGI_10010570; scaffold43494 GLEAN mRNA 178340 178855 0.747146 + . ID=CGI_10010570; scaffold43494 GLEAN promoter 178420 179419 0.997172 + . ID=CGI_10010571; scaffold43494 GLEAN mRNA 179420 180180 0.997172 + . ID=CGI_10010571; scaffold43494 GLEAN promoter 182374 183373 0.997568 + . ID=CGI_10010572; scaffold43494 GLEAN mRNA 183374 185712 0.997568 + . ID=CGI_10010572; scaffold43494 WUBlastX LINE_RTE-X 208718 208966 65 + . . scaffold43494 TRF Tandem_Repeat 212625 212735 195 + . . scaffold43494 TRF Tandem_Repeat 219714 219744 55 + . . scaffold43494 GLEAN promoter 222354 223353 0.982563 + . ID=CGI_10010573; scaffold43494 GLEAN mRNA 223354 237034 0.982563 + . ID=CGI_10010573; scaffold43494 TRF Tandem_Repeat 225823 225854 55 + . . scaffold43494 TRF Tandem_Repeat 225854 225888 70 + . . scaffold43494 TRF Tandem_Repeat 239880 239933 108 + . . scaffold43494 WUBlastX DNA_Harbinger 240562 240894 101 + . . scaffold43494 TRF Tandem_Repeat 256171 256300 233 + . . scaffold43494 TRF Tandem_Repeat 256709 256766 116 + . . scaffold43494 WUBlastX LTR_Gypsy 262980 263528 54 - . . scaffold43494 TRF Tandem_Repeat 264093 264147 67 + . . scaffold43494 TRF Tandem_Repeat 264550 264596 76 + . . scaffold43500 GLEAN mRNA 1793 12691 0.430579 - . ID=CGI_10010612; scaffold43500 TRF Tandem_Repeat 11772 11828 114 + . . scaffold43500 TRF Tandem_Repeat 12492 12553 124 + . . scaffold43500 GLEAN promoter 12692 13691 0.430579 - . ID=CGI_10010612; scaffold43500 TRF Tandem_Repeat 14929 15123 290 + . . scaffold43500 TRF Tandem_Repeat 14929 15123 291 + . . scaffold43500 TRF Tandem_Repeat 16046 16070 50 + . . scaffold43500 TRF Tandem_Repeat 29382 29418 74 + . . scaffold43500 TRF Tandem_Repeat 32059 32086 56 + . . scaffold43500 TRF Tandem_Repeat 36359 36401 86 + . . scaffold43500 TRF Tandem_Repeat 39302 39335 68 + . . scaffold43500 TRF Tandem_Repeat 41366 41401 72 + . . scaffold43500 TRF Tandem_Repeat 41729 41761 66 + . . scaffold43500 TRF Tandem_Repeat 42186 42388 230 + . . scaffold43500 TRF Tandem_Repeat 42388 42496 155 + . . scaffold43500 TRF Tandem_Repeat 42895 42956 65 + . . scaffold43500 TRF Tandem_Repeat 43354 43384 62 + . . scaffold43500 TRF Tandem_Repeat 43443 43496 74 + . . scaffold43500 WUBlastX LTR_Pao 44155 44454 33 + . . scaffold43500 WUBlastX LTR_Pao 44368 44592 23 + . . scaffold43500 WUBlastX LTR_Pao 44668 44784 60 + . . scaffold43500 TRF Tandem_Repeat 46090 46236 125 + . . scaffold43500 TRF Tandem_Repeat 46924 47025 111 + . . scaffold43500 TRF Tandem_Repeat 47001 47221 164 + . . scaffold43500 TRF Tandem_Repeat 47029 47221 199 + . . scaffold43500 TRF Tandem_Repeat 47287 47373 104 + . . scaffold43500 TRF Tandem_Repeat 47726 47771 92 + . . scaffold43500 TRF Tandem_Repeat 52203 52233 62 + . . scaffold43500 TRF Tandem_Repeat 54305 54387 132 + . . scaffold43500 GLEAN promoter 55260 56259 0.999999 + . ID=CGI_10010613; scaffold43500 TRF Tandem_Repeat 55466 55509 79 + . . scaffold43500 GLEAN mRNA 56260 60923 0.999999 + . ID=CGI_10010613; scaffold43500 GLEAN mRNA 67492 74179 0.830032 - . ID=CGI_10010614; scaffold43500 WUBlastX LINE_RTE-X 69625 70383 169 - . . scaffold43500 WUBlastX LINE_RTE-X 69748 70518 431 - . . scaffold43500 WUBlastX LINE_RTE-X 70524 70721 127 - . . scaffold43500 WUBlastX LINE_RTE-X 70600 71295 234 - . . scaffold43500 WUBlastX LINE_RTE-X 70729 71244 361 - . . scaffold43500 WUBlastX LINE_RTE-X 70732 71493 213 - . . scaffold43500 WUBlastX LINE_L1 70744 71640 22 - . . scaffold43500 WUBlastX LINE_L1 71688 71735 20 - . . scaffold43500 GLEAN promoter 74180 75179 0.830032 - . ID=CGI_10010614; scaffold43500 GLEAN mRNA 75844 79368 0.885301 - . ID=CGI_10010615; scaffold43500 GLEAN promoter 79369 80368 0.885301 - . ID=CGI_10010615; scaffold43500 TRF Tandem_Repeat 96761 96785 50 + . . scaffold43500 WUBlastX LINE_L1-Tx1 98337 98705 38 - . . scaffold43500 WUBlastX LINE_L1-Tx1 98373 98681 38 - . . scaffold43500 WUBlastX LINE_L1 98954 99949 60 - . . scaffold43500 WUBlastX LINE_L1-Tx1 99185 99988 273 - . . scaffold43500 WUBlastX LINE_L1-Tx1 99945 100220 62 - . . scaffold43500 WUBlastX LINE_L1-Tx1 100092 100235 79 - . . scaffold43500 WUBlastX LINE_L1-Tx1 100222 100443 65 - . . scaffold43500 WUBlastX LINE_L1-Tx1 100294 100452 99 - . . scaffold43500 WUBlastX LINE_L1 100312 100485 43 - . . scaffold43500 TRF Tandem_Repeat 106385 106442 116 + . . scaffold43500 TRF Tandem_Repeat 118399 118446 96 + . . scaffold43500 GLEAN promoter 124184 125183 0.999965 + . ID=CGI_10010616; scaffold43500 GLEAN mRNA 125184 125342 0.999965 + . ID=CGI_10010616; scaffold43500 TRF Tandem_Repeat 125938 125971 68 + . . scaffold43500 TRF Tandem_Repeat 127555 127619 53 + . . scaffold43500 GLEAN mRNA 131869 132534 0.992489 - . ID=CGI_10010617; scaffold43500 GLEAN promoter 132535 133534 0.992489 - . ID=CGI_10010617; scaffold43500 GLEAN promoter 138719 139718 0.7334 + . ID=CGI_10010618; scaffold43500 GLEAN promoter 139096 140095 0.999984 + . ID=CGI_10010619; scaffold43500 WUBlastX LINE_CR1 139281 139952 91 + . . scaffold43500 GLEAN mRNA 139719 139958 0.7334 + . ID=CGI_10010618; scaffold43500 GLEAN mRNA 140096 140308 0.999984 + . ID=CGI_10010619; scaffold43500 WUBlastX LINE_L1-Tx1 140667 141089 30 + . . scaffold43500 WUBlastX LINE_L1 140736 141113 79 + . . scaffold43500 WUBlastX LINE_L1-Tx1 141196 141804 63 + . . scaffold43500 WUBlastX LINE_L1 141747 142022 71 + . . scaffold43500 WUBlastX LINE_L1-Tx1 141804 142013 107 + . . scaffold43500 WUBlastX LINE_L1-Tx1 141834 142085 46 + . . scaffold43500 WUBlastX LINE_L1-Tx1 142418 143155 134 + . . scaffold43500 WUBlastX LINE_L1-Tx1 142547 143272 168 + . . scaffold43500 WUBlastX LINE_L1 142574 143185 301 + . . scaffold43500 WUBlastX LINE_I 143946 143987 25 + . . scaffold43500 WUBlastX LINE_L1-Tx1 148510 149010 54 + . . scaffold43500 WUBlastX LINE_L1-Tx1 148522 148866 102 + . . scaffold43500 GLEAN mRNA 149614 150279 0.624438 - . ID=CGI_10010620; scaffold43500 GLEAN promoter 150280 151279 0.624438 - . ID=CGI_10010620; scaffold43500 TRF Tandem_Repeat 153363 154092 1098 + . . scaffold43500 TRF Tandem_Repeat 159125 159176 68 + . . scaffold43500 TRF Tandem_Repeat 167807 168039 423 + . . scaffold43500 TRF Tandem_Repeat 174429 174462 68 + . . scaffold43500 GLEAN promoter 175435 176434 0.937656 + . ID=CGI_10010621; scaffold43500 GLEAN mRNA 176435 179611 0.937656 + . ID=CGI_10010621; scaffold43500 TRF Tandem_Repeat 181597 181622 52 + . . scaffold43500 TRF Tandem_Repeat 181750 181784 61 + . . scaffold43500 GLEAN promoter 184936 185935 0.591229 + . ID=CGI_10010622; scaffold43500 GLEAN mRNA 185936 226641 0.591229 + . ID=CGI_10010622; scaffold43500 TRF Tandem_Repeat 191357 191587 390 + . . scaffold43500 TRF Tandem_Repeat 193478 193573 120 + . . scaffold43500 TRF Tandem_Repeat 193478 193573 131 + . . scaffold43500 TRF Tandem_Repeat 217687 217883 154 + . . scaffold43500 TRF Tandem_Repeat 224574 224809 214 + . . scaffold43500 TRF Tandem_Repeat 224809 224852 61 + . . scaffold43500 GLEAN mRNA 231155 239451 0.999414 - . ID=CGI_10010623; scaffold43500 GLEAN promoter 239452 240451 0.999414 - . ID=CGI_10010623; scaffold43500 GLEAN promoter 241504 242503 0.999661 + . ID=CGI_10010624; scaffold43500 GLEAN mRNA 242504 243661 0.999661 + . ID=CGI_10010624; scaffold43500 GLEAN promoter 246314 247313 0.999676 + . ID=CGI_10010625; scaffold43500 GLEAN mRNA 247314 259859 0.999676 + . ID=CGI_10010625; scaffold43500 TRF Tandem_Repeat 249125 249379 402 + . . scaffold43500 GLEAN mRNA 261703 263297 0.485659 - . ID=CGI_10010626; scaffold43500 GLEAN promoter 261951 262950 0.988897 + . ID=CGI_10010627; scaffold43500 GLEAN mRNA 262951 269001 0.988897 + . ID=CGI_10010627; scaffold43500 GLEAN promoter 263298 264297 0.485659 - . ID=CGI_10010626; scaffold43520 GLEAN mRNA 2110 21519 0.993907 - . ID=CGI_10010711; scaffold43520 GLEAN promoter 21520 22519 0.993907 - . ID=CGI_10010711; scaffold43520 TRF Tandem_Repeat 33180 33328 97 + . . scaffold43520 TRF Tandem_Repeat 33244 33390 73 + . . scaffold43520 TRF Tandem_Repeat 34334 35128 702 + . . scaffold43520 TRF Tandem_Repeat 47246 47280 54 + . . scaffold43520 TRF Tandem_Repeat 47477 48313 1215 + . . scaffold43520 WUBlastX DNA_TcMar-Tc2 53215 54261 219 + . . scaffold43520 WUBlastX DNA_TcMar-Tc2 53218 54093 234 + . . scaffold43520 GLEAN promoter 54004 55003 0.998884 + . ID=CGI_10010712; scaffold43520 GLEAN mRNA 55004 65048 0.998884 + . ID=CGI_10010712; scaffold43520 TRF Tandem_Repeat 56297 56345 80 + . . scaffold43520 GLEAN promoter 69420 70419 0.999676 + . ID=CGI_10010713; scaffold43520 GLEAN mRNA 70420 76306 0.999676 + . ID=CGI_10010713; scaffold43520 GLEAN mRNA 78863 95530 1 - . ID=CGI_10010714; scaffold43520 TRF Tandem_Repeat 85114 85159 83 + . . scaffold43520 GLEAN promoter 86604 87603 1 + . ID=CGI_10010715; scaffold43520 GLEAN mRNA 87604 88498 1 + . ID=CGI_10010715; scaffold43520 TRF Tandem_Repeat 91199 92007 773 + . . scaffold43520 TRF Tandem_Repeat 93453 93510 91 + . . scaffold43520 GLEAN promoter 95531 96530 1 - . ID=CGI_10010714; scaffold43520 GLEAN promoter 98427 99426 0.544852 + . ID=CGI_10010716; scaffold43520 GLEAN mRNA 99427 123981 0.544852 + . ID=CGI_10010716; scaffold43520 TRF Tandem_Repeat 104239 104277 62 + . . scaffold43520 TRF Tandem_Repeat 124377 124429 106 + . . scaffold43520 GLEAN promoter 125473 126472 0.999949 + . ID=CGI_10010717; scaffold43520 GLEAN mRNA 126473 139605 0.999949 + . ID=CGI_10010717; scaffold43520 GLEAN mRNA 142772 148254 0.999668 - . ID=CGI_10010718; scaffold43520 TRF Tandem_Repeat 144291 144317 54 + . . scaffold43520 GLEAN promoter 148255 149254 0.999668 - . ID=CGI_10010718; scaffold43520 GLEAN promoter 151169 152168 0.618241 + . ID=CGI_10010719; scaffold43520 TRF Tandem_Repeat 151207 151235 58 + . . scaffold43520 TRF Tandem_Repeat 151406 151434 58 + . . scaffold43520 GLEAN mRNA 152169 152579 0.618241 + . ID=CGI_10010719; scaffold43520 GLEAN promoter 154129 155128 0.999135 + . ID=CGI_10010720; scaffold43520 GLEAN mRNA 155129 180237 0.999135 + . ID=CGI_10010720; scaffold43520 TRF Tandem_Repeat 181488 182049 809 + . . scaffold43520 GLEAN mRNA 184106 230161 0.796254 - . ID=CGI_10010721; scaffold43520 WUBlastX LTR_Ngaro 185338 186297 54 + . . scaffold43520 WUBlastX LTR_Ngaro 185629 186030 66 + . . scaffold43520 WUBlastX LINE_Penelope 188920 189144 59 + . . scaffold43520 GLEAN promoter 197110 198109 0.531601 + . ID=CGI_10010722; scaffold43520 GLEAN mRNA 198110 199579 0.531601 + . ID=CGI_10010722; scaffold43520 TRF Tandem_Repeat 211678 212159 721 + . . scaffold43520 GLEAN promoter 230162 231161 0.796254 - . ID=CGI_10010721; scaffold43520 TRF Tandem_Repeat 232717 232745 58 + . . scaffold43520 GLEAN mRNA 239504 245269 1 - . ID=CGI_10010723; scaffold43520 TRF Tandem_Repeat 240605 240657 106 + . . scaffold43520 GLEAN promoter 245270 246269 1 - . ID=CGI_10010723; scaffold43520 GLEAN mRNA 246576 249257 0.998817 - . ID=CGI_10010724; scaffold43520 GLEAN promoter 249258 250257 0.998817 - . ID=CGI_10010724; scaffold43520 TRF Tandem_Repeat 253097 253137 82 + . . scaffold43520 GLEAN mRNA 260878 269535 0.911795 - . ID=CGI_10010725; scaffold43520 WUBlastX DNA_Sola 264476 264847 122 + . . scaffold43520 TRF Tandem_Repeat 266457 266501 63 + . . scaffold43520 TRF Tandem_Repeat 266574 266606 66 + . . scaffold43520 GLEAN promoter 269536 270535 0.911795 - . ID=CGI_10010725; scaffold43520 TRF Tandem_Repeat 272893 272931 60 + . . scaffold43522 WUBlastX LINE_L1-Tx1 8323 8772 34 + . . scaffold43522 GLEAN promoter 16475 17474 0.920521 + . ID=CGI_10010543; scaffold43522 GLEAN mRNA 17475 20016 0.920521 + . ID=CGI_10010543; scaffold43522 TRF Tandem_Repeat 24182 24226 90 + . . scaffold43522 TRF Tandem_Repeat 26784 26817 68 + . . scaffold43522 TRF Tandem_Repeat 27224 27261 76 + . . scaffold43522 GLEAN promoter 29418 30417 0.999676 + . ID=CGI_10010544; scaffold43522 GLEAN mRNA 30418 35237 0.999676 + . ID=CGI_10010544; scaffold43522 GLEAN promoter 34276 35275 1 + . ID=CGI_10010545; scaffold43522 GLEAN mRNA 35276 35930 1 + . ID=CGI_10010545; scaffold43522 TRF Tandem_Repeat 43248 43293 92 + . . scaffold43522 GLEAN mRNA 44082 60440 0.544852 - . ID=CGI_10010546; scaffold43522 TRF Tandem_Repeat 48455 48504 100 + . . scaffold43522 TRF Tandem_Repeat 49425 49466 59 + . . scaffold43522 GLEAN promoter 60441 61440 0.544852 - . ID=CGI_10010546; scaffold43522 TRF Tandem_Repeat 60680 61201 542 + . . scaffold43522 TRF Tandem_Repeat 60680 61201 521 + . . scaffold43522 TRF Tandem_Repeat 60680 61199 438 + . . scaffold43522 GLEAN promoter 61373 62372 1 + . ID=CGI_10010547; scaffold43522 TRF Tandem_Repeat 61860 61912 88 + . . scaffold43522 GLEAN mRNA 62373 64041 1 + . ID=CGI_10010547; scaffold43522 GLEAN promoter 64842 65841 1 + . ID=CGI_10010548; scaffold43522 GLEAN mRNA 65842 67056 1 + . ID=CGI_10010548; scaffold43522 GLEAN promoter 67101 68100 1 + . ID=CGI_10010549; scaffold43522 GLEAN mRNA 68101 69976 1 + . ID=CGI_10010549; scaffold43522 TRF Tandem_Repeat 70168 70194 54 + . . scaffold43522 GLEAN mRNA 72023 82169 0.938365 - . ID=CGI_10010550; scaffold43522 GLEAN promoter 82170 83169 0.938365 - . ID=CGI_10010550; scaffold43522 GLEAN promoter 82396 83395 0.999468 + . ID=CGI_10010551; scaffold43522 GLEAN mRNA 83396 104526 0.999468 + . ID=CGI_10010551; scaffold43522 WUBlastX LINE_RTE-X 92491 92901 21 + . . scaffold43522 WUBlastX LINE_RTE-X 92650 92922 62 + . . scaffold43522 WUBlastX LINE_RTE-X 92707 92922 77 + . . scaffold43522 WUBlastX LINE_RTE-X 92722 92985 31 + . . scaffold43522 WUBlastX LINE_L1-Tx1 101177 102064 333 - . . scaffold43522 WUBlastX LINE_L1 101393 102205 45 - . . scaffold43522 WUBlastX LINE_L1 102908 102997 22 - . . scaffold43522 TRF Tandem_Repeat 105283 105388 72 + . . scaffold43522 TRF Tandem_Repeat 105534 105597 65 + . . scaffold43522 WUBlastX LINE_CR1-L2 109731 109805 55 + . . scaffold43522 WUBlastX LINE_CR1-L2 109799 110203 99 + . . scaffold43522 WUBlastX LINE_L2 110347 110505 21 + . . scaffold43522 GLEAN mRNA 113999 114304 0.957283 - . ID=CGI_10010552; scaffold43522 GLEAN promoter 114305 115304 0.957283 - . ID=CGI_10010552; scaffold43522 WUBlastX LINE_L1-Tx1 117045 118226 217 - . . scaffold43522 WUBlastX LINE_L1 118135 118752 96 - . . scaffold43522 WUBlastX LINE_L1-Tx1 118141 118653 248 - . . scaffold43522 TRF Tandem_Repeat 122424 122486 92 + . . scaffold43522 GLEAN promoter 123132 124131 0.710686 + . ID=CGI_10010553; scaffold43522 GLEAN mRNA 124132 135351 0.710686 + . ID=CGI_10010553; scaffold43522 GLEAN promoter 134421 135420 0.842395 + . ID=CGI_10010554; scaffold43522 GLEAN mRNA 135421 143321 0.842395 + . ID=CGI_10010554; scaffold43522 GLEAN promoter 142391 143390 0.992415 + . ID=CGI_10010555; scaffold43522 GLEAN mRNA 143391 150721 0.992415 + . ID=CGI_10010555; scaffold43522 GLEAN promoter 150428 151427 0.839518 + . ID=CGI_10010556; scaffold43522 GLEAN mRNA 151428 165796 0.839518 + . ID=CGI_10010556; scaffold43522 GLEAN promoter 165040 166039 0.999481 + . ID=CGI_10010557; scaffold43522 GLEAN mRNA 166040 167792 0.999481 + . ID=CGI_10010557; scaffold43522 GLEAN promoter 169199 170198 1 + . ID=CGI_10010558; scaffold43522 GLEAN mRNA 170199 178092 1 + . ID=CGI_10010558; scaffold43522 GLEAN promoter 182550 183549 1 + . ID=CGI_10010559; scaffold43522 GLEAN mRNA 183550 188685 1 + . ID=CGI_10010559; scaffold43522 TRF Tandem_Repeat 185212 185247 56 + . . scaffold43522 GLEAN promoter 188803 189802 0.987124 + . ID=CGI_10010561; scaffold43522 GLEAN mRNA 189344 189841 1 - . ID=CGI_10010560; scaffold43522 GLEAN mRNA 189803 200855 0.987124 + . ID=CGI_10010561; scaffold43522 GLEAN promoter 189842 190841 1 - . ID=CGI_10010560; scaffold43522 TRF Tandem_Repeat 191310 191338 58 + . . scaffold43522 GLEAN mRNA 199219 209315 0.481384 - . ID=CGI_10010562; scaffold43522 TRF Tandem_Repeat 201140 201187 96 + . . scaffold43522 GLEAN promoter 209316 210315 0.481384 - . ID=CGI_10010562; scaffold43522 TRF Tandem_Repeat 213709 213770 58 + . . scaffold43522 GLEAN mRNA 217231 225593 1 - . ID=CGI_10010563; scaffold43522 TRF Tandem_Repeat 220532 220583 95 + . . scaffold43522 GLEAN promoter 225594 226593 1 - . ID=CGI_10010563; scaffold43522 GLEAN promoter 233670 234669 0.996336 + . ID=CGI_10010564; scaffold43522 GLEAN mRNA 234670 247177 0.996336 + . ID=CGI_10010564; scaffold43522 TRF Tandem_Repeat 240399 240456 50 + . . scaffold43522 TRF Tandem_Repeat 245090 245151 124 + . . scaffold43522 GLEAN promoter 251200 252199 0.547003 + . ID=CGI_10010565; scaffold43522 GLEAN mRNA 252200 260988 0.547003 + . ID=CGI_10010565; scaffold43522 TRF Tandem_Repeat 263790 263814 50 + . . scaffold43522 TRF Tandem_Repeat 265224 265260 74 + . . scaffold43526 GLEAN mRNA 1803 5707 0.84036 - . ID=CGI_10010783; scaffold43526 GLEAN promoter 5708 6707 0.84036 - . ID=CGI_10010783; scaffold43526 TRF Tandem_Repeat 8252 8293 84 + . . scaffold43526 TRF Tandem_Repeat 28354 28396 86 + . . scaffold43526 TRF Tandem_Repeat 30614 30713 168 + . . scaffold43526 TRF Tandem_Repeat 32520 32561 50 + . . scaffold43526 GLEAN promoter 35766 36765 0.985699 + . ID=CGI_10010784; scaffold43526 TRF Tandem_Repeat 36230 36327 178 + . . scaffold43526 GLEAN mRNA 36766 62971 0.985699 + . ID=CGI_10010784; scaffold43526 WUBlastX LINE_RTE-X 37356 37619 82 + . . scaffold43526 WUBlastX LINE_RTE-X 38414 38530 38 + . . scaffold43526 WUBlastX LINE_RTE-X 38453 38632 26 + . . scaffold43526 WUBlastX LINE_RTE-X 38453 38530 59 + . . scaffold43526 TRF Tandem_Repeat 41788 41838 102 + . . scaffold43526 WUBlastX LINE_L1-Tx1 42864 43361 67 + . . scaffold43526 WUBlastX LINE_L1-Tx1 42876 43286 70 + . . scaffold43526 TRF Tandem_Repeat 46655 46695 82 + . . scaffold43526 TRF Tandem_Repeat 47840 47869 60 + . . scaffold43526 TRF Tandem_Repeat 49971 49998 56 + . . scaffold43526 TRF Tandem_Repeat 58115 58157 86 + . . scaffold43526 TRF Tandem_Repeat 60576 60622 94 + . . scaffold43526 GLEAN mRNA 66885 74284 0.999676 - . ID=CGI_10010785; scaffold43526 GLEAN promoter 74285 75284 0.999676 - . ID=CGI_10010785; scaffold43526 TRF Tandem_Repeat 76996 77029 61 + . . scaffold43526 TRF Tandem_Repeat 80226 80562 360 + . . scaffold43526 TRF Tandem_Repeat 80254 80582 278 + . . scaffold43526 GLEAN mRNA 81650 111303 0.227501 - . ID=CGI_10010786; scaffold43526 TRF Tandem_Repeat 86680 86797 73 + . . scaffold43526 TRF Tandem_Repeat 94443 94477 70 + . . scaffold43526 TRF Tandem_Repeat 102453 102777 402 + . . scaffold43526 TRF Tandem_Repeat 103406 103604 344 + . . scaffold43526 TRF Tandem_Repeat 104789 104835 94 + . . scaffold43526 TRF Tandem_Repeat 105072 105331 304 + . . scaffold43526 TRF Tandem_Repeat 105072 105331 290 + . . scaffold43526 TRF Tandem_Repeat 105072 105331 306 + . . scaffold43526 TRF Tandem_Repeat 105979 106303 384 + . . scaffold43526 TRF Tandem_Repeat 105979 106305 396 + . . scaffold43526 TRF Tandem_Repeat 109490 110198 383 + . . scaffold43526 GLEAN promoter 111304 112303 0.227501 - . ID=CGI_10010786; scaffold43526 GLEAN mRNA 118439 120196 0.99907 - . ID=CGI_10010787; scaffold43526 GLEAN promoter 120197 121196 0.99907 - . ID=CGI_10010787; scaffold43526 TRF Tandem_Repeat 122178 122220 77 + . . scaffold43526 TRF Tandem_Repeat 132503 132543 82 + . . scaffold43526 TRF Tandem_Repeat 133312 133349 76 + . . scaffold43526 TRF Tandem_Repeat 142662 142714 106 + . . scaffold43526 TRF Tandem_Repeat 146211 146251 82 + . . scaffold43526 WUBlastX LTR_Pao 168021 169103 279 + . . scaffold43526 WUBlastX LTR_Pao 168354 169112 336 + . . scaffold43526 GLEAN promoter 168594 169593 0.999991 + . ID=CGI_10010788; scaffold43526 WUBlastX LTR_Pao 169042 169170 24 + . . scaffold43526 WUBlastX LTR_Pao 169066 169242 21 + . . scaffold43526 GLEAN mRNA 169594 169887 0.999991 + . ID=CGI_10010788; scaffold43526 WUBlastX LTR_Pao 169717 169845 20 + . . scaffold43526 GLEAN mRNA 176858 177700 0.965908 - . ID=CGI_10010789; scaffold43526 GLEAN promoter 177701 178700 0.965908 - . ID=CGI_10010789; scaffold43526 WUBlastX LINE_RTE-X 181496 182467 348 - . . scaffold43526 TRF Tandem_Repeat 202779 202811 66 + . . scaffold43526 GLEAN promoter 203065 204064 1 + . ID=CGI_10010790; scaffold43526 GLEAN mRNA 204065 205245 1 + . ID=CGI_10010790; scaffold43526 TRF Tandem_Repeat 207343 207392 100 + . . scaffold43526 TRF Tandem_Repeat 207439 207479 82 + . . scaffold43526 TRF Tandem_Repeat 209972 210024 106 + . . scaffold43526 TRF Tandem_Repeat 227440 227480 73 + . . scaffold43526 TRF Tandem_Repeat 230382 230434 106 + . . scaffold43526 TRF Tandem_Repeat 231395 231442 87 + . . scaffold43526 TRF Tandem_Repeat 231602 231651 100 + . . scaffold43526 TRF Tandem_Repeat 236999 237050 104 + . . scaffold43526 GLEAN mRNA 238409 247497 1 - . ID=CGI_10010791; scaffold43526 TRF Tandem_Repeat 240855 240922 136 + . . scaffold43526 GLEAN promoter 247498 248497 1 - . ID=CGI_10010791; scaffold43526 TRF Tandem_Repeat 248584 248685 195 + . . scaffold43526 GLEAN mRNA 257994 264461 1 - . ID=CGI_10010792; scaffold43526 GLEAN promoter 264462 265461 1 - . ID=CGI_10010792; scaffold43526 TRF Tandem_Repeat 268615 268648 50 + . . scaffold43530 WUBlastX LTR_Gypsy 14 1441 803 - . . scaffold43530 GLEAN mRNA 2696 16583 0.990448 - . ID=CGI_10010726; scaffold43530 GLEAN promoter 16584 17583 0.990448 - . ID=CGI_10010726; scaffold43530 GLEAN mRNA 25078 54104 0.995191 - . ID=CGI_10010727; scaffold43530 TRF Tandem_Repeat 31223 31883 848 + . . scaffold43530 TRF Tandem_Repeat 44927 44957 62 + . . scaffold43530 TRF Tandem_Repeat 47460 47498 78 + . . scaffold43530 TRF Tandem_Repeat 47489 47567 71 + . . scaffold43530 TRF Tandem_Repeat 51348 51400 106 + . . scaffold43530 TRF Tandem_Repeat 52248 52305 109 + . . scaffold43530 GLEAN promoter 54105 55104 0.995191 - . ID=CGI_10010727; scaffold43530 WUBlastX LINE_RTE-X 64057 65478 255 - . . scaffold43530 WUBlastX LINE_RTE-X 64630 65484 341 - . . scaffold43530 WUBlastX LINE_RTE-RTE 64741 65664 36 - . . scaffold43530 TRF Tandem_Repeat 80943 82187 2409 + . . scaffold43530 GLEAN promoter 83223 84222 0.25922 + . ID=CGI_10010728; scaffold43530 GLEAN mRNA 84223 108409 0.25922 + . ID=CGI_10010728; scaffold43530 TRF Tandem_Repeat 100352 100402 84 + . . scaffold43530 TRF Tandem_Repeat 105672 105726 103 + . . scaffold43530 TRF Tandem_Repeat 106197 106434 307 + . . scaffold43530 TRF Tandem_Repeat 106197 106461 219 + . . scaffold43530 TRF Tandem_Repeat 107578 107606 58 + . . scaffold43530 GLEAN mRNA 109675 123124 1 - . ID=CGI_10010729; scaffold43530 TRF Tandem_Repeat 118986 119016 62 + . . scaffold43530 GLEAN promoter 122454 123453 0.814164 + . ID=CGI_10010730; scaffold43530 GLEAN promoter 123125 124124 1 - . ID=CGI_10010729; scaffold43530 GLEAN mRNA 123454 129030 0.814164 + . ID=CGI_10010730; scaffold43530 TRF Tandem_Repeat 127183 127310 94 + . . scaffold43530 TRF Tandem_Repeat 127232 127310 140 + . . scaffold43530 GLEAN mRNA 129519 133818 1 - . ID=CGI_10010731; scaffold43530 TRF Tandem_Repeat 131590 131655 132 + . . scaffold43530 GLEAN promoter 133819 134818 1 - . ID=CGI_10010731; scaffold43530 TRF Tandem_Repeat 136178 136209 55 + . . scaffold43530 TRF Tandem_Repeat 136179 136213 52 + . . scaffold43530 TRF Tandem_Repeat 155364 155394 62 + . . scaffold43530 TRF Tandem_Repeat 158774 158805 64 + . . scaffold43530 TRF Tandem_Repeat 189714 189739 52 + . . scaffold43530 TRF Tandem_Repeat 189743 189788 92 + . . scaffold43530 WUBlastX LINE_L1 208570 209178 56 + . . scaffold43530 WUBlastX LINE_CR1-L2 208690 209205 122 + . . scaffold43530 TRF Tandem_Repeat 209509 209537 51 + . . scaffold43530 WUBlastX LINE_L1-Tx1 209661 210992 691 + . . scaffold43530 WUBlastX LINE_L1-Tx1 210991 213405 1116 + . . scaffold43530 TRF Tandem_Repeat 227555 227655 60 + . . scaffold43530 TRF Tandem_Repeat 248347 248421 62 + . . scaffold43530 TRF Tandem_Repeat 248482 248522 64 + . . scaffold43530 TRF Tandem_Repeat 249304 249336 57 + . . scaffold43530 TRF Tandem_Repeat 249490 249538 98 + . . scaffold43530 TRF Tandem_Repeat 249720 249759 71 + . . scaffold43530 TRF Tandem_Repeat 249879 249926 87 + . . scaffold43530 TRF Tandem_Repeat 250635 250688 108 + . . scaffold43536 GLEAN promoter 1350 2349 0.593383 + . ID=CGI_10010843; scaffold43536 TRF Tandem_Repeat 1796 1833 55 + . . scaffold43536 GLEAN mRNA 2350 7149 0.593383 + . ID=CGI_10010843; scaffold43536 TRF Tandem_Repeat 4856 4888 66 + . . scaffold43536 TRF Tandem_Repeat 7294 7343 100 + . . scaffold43536 GLEAN promoter 9901 10900 0.593383 + . ID=CGI_10010845; scaffold43536 GLEAN mRNA 10019 10635 0.996819 - . ID=CGI_10010844; scaffold43536 GLEAN promoter 10636 11635 0.996819 - . ID=CGI_10010844; scaffold43536 GLEAN mRNA 10901 11486 0.593383 + . ID=CGI_10010845; scaffold43536 GLEAN promoter 12224 13223 0.999999 + . ID=CGI_10010846; scaffold43536 GLEAN mRNA 13224 22506 0.999999 + . ID=CGI_10010846; scaffold43536 TRF Tandem_Repeat 16926 16975 100 + . . scaffold43536 GLEAN mRNA 23169 28367 0.671547 - . ID=CGI_10010847; scaffold43536 TRF Tandem_Repeat 23960 24041 51 + . . scaffold43536 GLEAN promoter 28341 29340 0.999943 + . ID=CGI_10010848; scaffold43536 GLEAN promoter 28368 29367 0.671547 - . ID=CGI_10010847; scaffold43536 GLEAN mRNA 29341 31399 0.999943 + . ID=CGI_10010848; scaffold43536 GLEAN promoter 30834 31833 0.999996 + . ID=CGI_10010849; scaffold43536 GLEAN mRNA 31834 33662 0.999996 + . ID=CGI_10010849; scaffold43536 TRF Tandem_Repeat 32182 32329 224 + . . scaffold43536 GLEAN promoter 37513 38512 0.981338 + . ID=CGI_10010850; scaffold43536 GLEAN mRNA 38513 40156 0.981338 + . ID=CGI_10010850; scaffold43536 GLEAN promoter 53852 54851 0.728612 + . ID=CGI_10010851; scaffold43536 GLEAN mRNA 54852 76229 0.728612 + . ID=CGI_10010851; scaffold43536 TRF Tandem_Repeat 55867 55898 64 + . . scaffold43536 TRF Tandem_Repeat 58224 58255 55 + . . scaffold43536 GLEAN promoter 89984 90983 0.404927 + . ID=CGI_10010852; scaffold43536 GLEAN mRNA 90984 103097 0.404927 + . ID=CGI_10010852; scaffold43536 GLEAN promoter 102238 103237 0.849816 + . ID=CGI_10010853; scaffold43536 GLEAN mRNA 103238 109067 0.849816 + . ID=CGI_10010853; scaffold43536 TRF Tandem_Repeat 104477 104662 159 + . . scaffold43536 TRF Tandem_Repeat 105320 105466 240 + . . scaffold43536 GLEAN promoter 110984 111983 0.651135 + . ID=CGI_10010854; scaffold43536 TRF Tandem_Repeat 111262 111305 88 + . . scaffold43536 GLEAN mRNA 111984 119699 0.651135 + . ID=CGI_10010854; scaffold43536 TRF Tandem_Repeat 114183 114236 108 + . . scaffold43536 GLEAN mRNA 115425 117017 1 - . ID=CGI_10010855; scaffold43536 GLEAN promoter 117018 118017 1 - . ID=CGI_10010855; scaffold43536 GLEAN mRNA 120396 124429 0.999376 - . ID=CGI_10010856; scaffold43536 GLEAN promoter 124430 125429 0.999376 - . ID=CGI_10010856; scaffold43536 TRF Tandem_Repeat 126210 126264 110 + . . scaffold43536 TRF Tandem_Repeat 128206 128248 86 + . . scaffold43536 GLEAN promoter 129106 130105 0.990126 + . ID=CGI_10010857; scaffold43536 GLEAN mRNA 130106 164464 0.990126 + . ID=CGI_10010857; scaffold43536 GLEAN promoter 163699 164698 0.992512 + . ID=CGI_10010858; scaffold43536 GLEAN mRNA 164699 199873 0.992512 + . ID=CGI_10010858; scaffold43536 TRF Tandem_Repeat 202049 202152 153 + . . scaffold43536 GLEAN mRNA 202761 204826 1 - . ID=CGI_10010859; scaffold43536 GLEAN promoter 204827 205826 1 - . ID=CGI_10010859; scaffold43536 GLEAN promoter 205976 206975 1 + . ID=CGI_10010860; scaffold43536 GLEAN mRNA 206976 208882 1 + . ID=CGI_10010860; scaffold43536 GLEAN promoter 215699 216698 0.702385 + . ID=CGI_10010861; scaffold43536 GLEAN mRNA 216699 218886 0.702385 + . ID=CGI_10010861; scaffold43536 GLEAN mRNA 222289 223293 0.999984 - . ID=CGI_10010862; scaffold43536 GLEAN promoter 223294 224293 0.999984 - . ID=CGI_10010862; scaffold43536 GLEAN promoter 224309 225308 1 + . ID=CGI_10010863; scaffold43536 GLEAN mRNA 225309 229812 1 + . ID=CGI_10010863; scaffold43536 TRF Tandem_Repeat 236238 237252 1400 + . . scaffold43536 GLEAN promoter 237087 238086 1 + . ID=CGI_10010864; scaffold43536 GLEAN mRNA 238087 240544 1 + . ID=CGI_10010864; scaffold43536 TRF Tandem_Repeat 244327 244376 66 + . . scaffold43536 TRF Tandem_Repeat 244333 244379 76 + . . scaffold43536 GLEAN mRNA 245961 253802 0.573272 - . ID=CGI_10010865; scaffold43536 GLEAN promoter 253803 254802 0.573272 - . ID=CGI_10010865; scaffold43536 GLEAN promoter 253926 254925 0.995282 + . ID=CGI_10010866; scaffold43536 GLEAN mRNA 254926 265058 0.995282 + . ID=CGI_10010866; scaffold43536 TRF Tandem_Repeat 263209 263250 68 + . . scaffold43536 GLEAN promoter 269443 270442 0.998923 + . ID=CGI_10010867; scaffold43536 GLEAN mRNA 270443 271285 0.998923 + . ID=CGI_10010867; scaffold43536 WUBlastX LINE_L1-Tx1 274222 274392 50 + . . scaffold43538 WUBlastX LINE_RTE-X 4340 4414 41 + . . scaffold43538 WUBlastX LINE_RTE-X 4372 4821 107 + . . scaffold43538 WUBlastX LINE_RTE-X 4997 5305 41 + . . scaffold43538 WUBlastX LINE_RTE-X 5012 5371 23 + . . scaffold43538 GLEAN promoter 9395 10394 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy-Cigr 9567 10157 79 + . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 9591 10073 157 + . . scaffold43538 WUBlastX LTR_Gypsy 9612 10388 67 + . . scaffold43538 GLEAN mRNA 10395 14337 0.902653 + . ID=CGI_10010812; scaffold43538 WUBlastX LTR_Gypsy 10572 10748 32 + . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 10608 11027 66 + . . scaffold43538 WUBlastX LTR_Gypsy 10686 11165 69 + . . scaffold43538 WUBlastX LTR_Gypsy 11092 11373 150 + . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 11152 11373 179 + . . scaffold43538 WUBlastX LTR_Gypsy 11367 11756 290 + . . scaffold43538 WUBlastX LTR_Gypsy 11738 12730 299 + . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 12117 13187 243 + . . scaffold43538 WUBlastX LTR_Gypsy 12380 12730 344 + . . scaffold43538 WUBlastX LINE_RTE-X 16270 16500 36 + . . scaffold43538 TRF Tandem_Repeat 16815 17577 1354 + . . scaffold43538 TRF Tandem_Repeat 29292 30246 1005 + . . scaffold43538 GLEAN mRNA 31086 35366 0.988787 - . ID=CGI_10010813; scaffold43538 WUBlastX LTR_Gypsy 31880 32503 27 + . . scaffold43538 WUBlastX LTR_Gypsy 32012 32215 42 + . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 32075 32515 178 + . . scaffold43538 WUBlastX LTR_Gypsy 32425 33960 380 + . . scaffold43538 WUBlastX LTR_Gypsy 32677 34578 444 + . . scaffold43538 WUBlastX LTR_Gypsy-Cigr 33559 34578 498 + . . scaffold43538 WUBlastX LTR_Gypsy 34568 34918 77 + . . scaffold43538 WUBlastX LTR_Gypsy 34574 34780 186 + . . scaffold43538 GLEAN promoter 34628 35627 0.999999 + . ID=CGI_10010815; scaffold43538 WUBlastX LTR_Gypsy-Cigr 34919 35122 89 + . . scaffold43538 GLEAN promoter 35367 36366 0.988787 - . ID=CGI_10010813; scaffold43538 GLEAN mRNA 35579 36202 1 - . ID=CGI_10010814; scaffold43538 GLEAN mRNA 35628 36251 0.999999 + . ID=CGI_10010815; scaffold43538 GLEAN promoter 36203 37202 1 - . ID=CGI_10010814; scaffold43538 WUBlastX DNA_Sola 43490 43735 124 - . . scaffold43538 WUBlastX DNA_Sola 43594 43965 22 - . . scaffold43538 WUBlastX DNA_Sola 43786 43941 38 - . . scaffold43538 WUBlastX DNA_Sola 44100 44201 29 - . . scaffold43538 WUBlastX DNA_Sola 44720 44827 21 - . . scaffold43538 WUBlastX DNA_Sola 45108 45329 82 - . . scaffold43538 WUBlastX DNA_Sola 45867 46016 93 - . . scaffold43538 WUBlastX DNA_hAT-Tip100 49230 51014 668 - . . scaffold43538 WUBlastX DNA_hAT-Tip100 49527 51239 793 - . . scaffold43538 WUBlastX DNA_hAT-Blackja 51566 51688 20 - . . scaffold43538 WUBlastX DNA_Helitron 51749 52126 74 - . . scaffold43538 WUBlastX RC_Helitron 52001 52123 82 - . . scaffold43538 WUBlastX DNA_IS4EU 55928 55972 26 - . . scaffold43538 WUBlastX DNA_IS4EU 55939 56187 47 - . . scaffold43538 WUBlastX DNA_Kolobok-IS4 56023 56187 77 - . . scaffold43538 GLEAN promoter 57249 58248 0.988055 + . ID=CGI_10010816; scaffold43538 GLEAN mRNA 58249 64898 0.988055 + . ID=CGI_10010816; scaffold43538 TRF Tandem_Repeat 66516 66575 120 + . . scaffold43538 TRF Tandem_Repeat 68409 68666 214 + . . scaffold43538 TRF Tandem_Repeat 68411 68670 285 + . . scaffold43538 TRF Tandem_Repeat 68682 68903 236 + . . scaffold43538 WUBlastX LINE_R2-Hero 69602 69928 72 - . . scaffold43538 WUBlastX LINE_R2-Hero 70259 70378 40 - . . scaffold43538 WUBlastX LINE_R2-Hero 71379 71438 26 - . . scaffold43538 GLEAN promoter 71809 72808 0.99965 + . ID=CGI_10010817; scaffold43538 GLEAN mRNA 72809 78798 0.99965 + . ID=CGI_10010817; scaffold43538 TRF Tandem_Repeat 79201 79242 68 + . . scaffold43538 TRF Tandem_Repeat 79407 80419 1527 + . . scaffold43538 GLEAN promoter 83773 84772 0.999624 + . ID=CGI_10010818; scaffold43538 GLEAN mRNA 84773 91900 0.999624 + . ID=CGI_10010818; scaffold43538 GLEAN promoter 92421 93420 0.999999 + . ID=CGI_10010819; scaffold43538 GLEAN mRNA 93421 101295 0.999999 + . ID=CGI_10010819; scaffold43538 TRF Tandem_Repeat 98339 98372 68 + . . scaffold43538 TRF Tandem_Repeat 100690 100716 54 + . . scaffold43538 WUBlastX LINE_DRE 103827 103886 20 + . . scaffold43538 WUBlastX LINE_Jockey 104173 104952 32 + . . scaffold43538 WUBlastX LINE_RTE-BovB 104293 104958 93 + . . scaffold43538 WUBlastX LINE_RTE-X 104464 104958 254 + . . scaffold43538 WUBlastX LINE_RTE-X 104548 104958 262 + . . scaffold43538 WUBlastX LINE_RTE-BovB 105322 105963 99 + . . scaffold43538 WUBlastX LINE_RTE-X 105475 107073 651 + . . scaffold43538 TRF Tandem_Repeat 107211 107270 57 + . . scaffold43538 TRF Tandem_Repeat 109882 109943 124 + . . scaffold43538 GLEAN promoter 116113 117112 0.999744 + . ID=CGI_10010820; scaffold43538 GLEAN mRNA 117113 120994 0.999744 + . ID=CGI_10010820; scaffold43538 TRF Tandem_Repeat 117424 117843 387 + . . scaffold43538 GLEAN mRNA 121649 141815 0.993977 - . ID=CGI_10010821; scaffold43538 TRF Tandem_Repeat 129474 129963 427 + . . scaffold43538 TRF Tandem_Repeat 133095 134594 2164 + . . scaffold43538 TRF Tandem_Repeat 133095 134537 2059 + . . scaffold43538 TRF Tandem_Repeat 133315 134594 1904 + . . scaffold43538 TRF Tandem_Repeat 136442 137464 1564 + . . scaffold43538 TRF Tandem_Repeat 136442 137464 1538 + . . scaffold43538 TRF Tandem_Repeat 139948 140145 218 + . . scaffold43538 GLEAN promoter 141816 142815 0.993977 - . ID=CGI_10010821; scaffold43538 GLEAN promoter 142055 143054 0.937813 + . ID=CGI_10010822; scaffold43538 GLEAN mRNA 143055 151112 0.937813 + . ID=CGI_10010822; scaffold43538 TRF Tandem_Repeat 143395 143892 599 + . . scaffold43538 TRF Tandem_Repeat 146030 146624 865 + . . scaffold43538 TRF Tandem_Repeat 146790 146979 199 + . . scaffold43538 TRF Tandem_Repeat 148307 148350 79 + . . scaffold43538 TRF Tandem_Repeat 148462 149058 1176 + . . scaffold43538 TRF Tandem_Repeat 149117 149252 272 + . . scaffold43538 TRF Tandem_Repeat 150114 150405 487 + . . scaffold43538 GLEAN mRNA 151937 158307 1 - . ID=CGI_10010823; scaffold43538 TRF Tandem_Repeat 152453 153794 1701 + . . scaffold43538 WUBlastX LINE_CR1 154836 155327 30 + . . scaffold43538 WUBlastX LINE_CR1 155064 155363 51 + . . scaffold43538 WUBlastX LINE_CR1 155110 155847 166 + . . scaffold43538 WUBlastX LINE_CR1 155416 155844 222 + . . scaffold43538 WUBlastX LINE_CR1 155431 155928 183 + . . scaffold43538 WUBlastX LINE_CR1 155919 155963 27 + . . scaffold43538 GLEAN promoter 157520 158519 1 + . ID=CGI_10010824; scaffold43538 GLEAN promoter 158308 159307 1 - . ID=CGI_10010823; scaffold43538 GLEAN mRNA 158520 161178 1 + . ID=CGI_10010824; scaffold43538 GLEAN mRNA 163638 171595 0.66007 - . ID=CGI_10010825; scaffold43538 TRF Tandem_Repeat 165324 166429 1552 + . . scaffold43538 TRF Tandem_Repeat 166453 166512 70 + . . scaffold43538 TRF Tandem_Repeat 166460 166517 66 + . . scaffold43538 TRF Tandem_Repeat 168514 169510 1383 + . . scaffold43538 TRF Tandem_Repeat 169534 169593 70 + . . scaffold43538 TRF Tandem_Repeat 169541 169598 66 + . . scaffold43538 GLEAN promoter 171596 172595 0.66007 - . ID=CGI_10010825; scaffold43538 GLEAN mRNA 173424 175483 1 - . ID=CGI_10010826; scaffold43538 GLEAN promoter 175484 176483 1 - . ID=CGI_10010826; scaffold43538 WUBlastX DNA_En-Spm 178665 179978 911 + . . scaffold43538 WUBlastX DNA_En-Spm 179733 180023 31 + . . scaffold43538 WUBlastX LTR_Gypsy 181481 181651 20 + . . scaffold43538 WUBlastX LTR_Gypsy 181508 181678 71 + . . scaffold43538 WUBlastX LTR_Gypsy 181529 181663 97 + . . scaffold43538 WUBlastX LTR_Gypsy 181559 181663 106 + . . scaffold43538 WUBlastX LTR_Gypsy 181669 182070 148 + . . scaffold43538 WUBlastX LTR_Gypsy 181914 182540 274 + . . scaffold43538 WUBlastX LTR_Gypsy 182049 182564 294 + . . scaffold43538 WUBlastX LTR_Gypsy 182540 183133 277 + . . scaffold43538 WUBlastX LTR_Gypsy 183123 183275 41 + . . scaffold43538 WUBlastX LTR_Gypsy 183129 183311 32 + . . scaffold43538 TRF Tandem_Repeat 183735 185691 1912 + . . scaffold43538 GLEAN promoter 185493 186492 0.99946 + . ID=CGI_10010827; scaffold43538 GLEAN mRNA 186493 189890 0.99946 + . ID=CGI_10010827; scaffold43538 TRF Tandem_Repeat 189666 189718 61 + . . scaffold43538 WUBlastX LINE_RTE-X 191642 192610 49 - . . scaffold43538 WUBlastX LINE_RTE-X 191693 192397 59 - . . scaffold43538 TRF Tandem_Repeat 193324 193361 76 + . . scaffold43538 TRF Tandem_Repeat 194862 195829 621 + . . scaffold43538 TRF Tandem_Repeat 195019 195875 902 + . . scaffold43538 TRF Tandem_Repeat 201232 201259 56 + . . scaffold43538 TRF Tandem_Repeat 213586 213628 70 + . . scaffold43538 TRF Tandem_Repeat 213598 213639 57 + . . scaffold43538 TRF Tandem_Repeat 216907 216971 103 + . . scaffold43538 TRF Tandem_Repeat 218362 218470 71 + . . scaffold43538 WUBlastX DNA_Helitron 223092 223409 48 + . . scaffold43538 WUBlastX RC_Helitron 223197 223457 83 + . . scaffold43538 WUBlastX RC_Helitron 223571 223741 21 + . . scaffold43538 WUBlastX RC_Helitron 223598 223822 30 + . . scaffold43538 WUBlastX RC_Helitron 224147 226585 1695 + . . scaffold43538 WUBlastX RC_Helitron 226717 227694 549 + . . scaffold43538 WUBlastX RC_Helitron 227694 228221 278 + . . scaffold43538 WUBlastX LINE_L2 228069 228254 20 + . . scaffold43538 WUBlastX RC_Helitron 228254 228670 73 + . . scaffold43538 WUBlastX LINE_L2 228317 228805 25 + . . scaffold43538 WUBlastX LTR_Gypsy 231546 232418 130 - . . scaffold43538 WUBlastX LTR_Gypsy 231753 232382 135 - . . scaffold43538 WUBlastX LTR_Gypsy 231894 232415 138 - . . scaffold43538 WUBlastX LTR_Gypsy 232080 232334 150 - . . scaffold43538 WUBlastX LTR_Gypsy 232119 232415 158 - . . scaffold43538 WUBlastX LTR_Gypsy 232325 233698 892 - . . scaffold43538 WUBlastX LINE_L1 264660 264773 21 + . . scaffold43538 WUBlastX LINE_L1 265432 265893 79 + . . scaffold43538 WUBlastX LINE_CR1 265525 266709 916 + . . scaffold43538 TRF Tandem_Repeat 266838 266863 52 + . . scaffold43538 WUBlastX LINE_L1-Tx1 272010 272237 53 + . . scaffold43538 WUBlastX LINE_L1-Tx1 272037 272657 41 + . . scaffold43538 WUBlastX LINE_L1 272037 272219 72 + . . scaffold43538 WUBlastX LINE_L1 272457 272657 66 + . . scaffold43538 TRF Tandem_Repeat 274702 274802 106 + . . scaffold43538 TRF Tandem_Repeat 274702 274802 106 + . . scaffold43538 TRF Tandem_Repeat 274703 274759 78 + . . scaffold43538 TRF Tandem_Repeat 275583 275688 176 + . . scaffold43538 TRF Tandem_Repeat 275583 275688 189 + . . scaffold43552 WUBlastX LINE_L2 12 572 107 - . . scaffold43552 WUBlastX LINE_L2 18 737 81 - . . scaffold43552 WUBlastX LTR_Ngaro 3721 4533 85 + . . scaffold43552 WUBlastX LTR_Ngaro 4282 4533 110 + . . scaffold43552 WUBlastX LTR_Ngaro 4532 4684 47 + . . scaffold43552 TRF Tandem_Repeat 6616 6936 642 + . . scaffold43552 TRF Tandem_Repeat 10970 11090 190 + . . scaffold43552 TRF Tandem_Repeat 30989 31057 111 + . . scaffold43552 TRF Tandem_Repeat 30989 31057 93 + . . scaffold43552 TRF Tandem_Repeat 45215 45272 82 + . . scaffold43552 TRF Tandem_Repeat 57203 57302 200 + . . scaffold43552 TRF Tandem_Repeat 59218 59490 408 + . . scaffold43552 GLEAN promoter 61669 62668 0.993199 + . ID=CGI_10011017; scaffold43552 GLEAN mRNA 62669 64273 0.993199 + . ID=CGI_10011017; scaffold43552 WUBlastX LTR_Pao 69378 69818 332 - . . scaffold43552 WUBlastX LTR_Pao 69824 70312 459 - . . scaffold43552 GLEAN mRNA 80444 94810 0.544824 - . ID=CGI_10011018; scaffold43552 GLEAN promoter 94811 95810 0.544824 - . ID=CGI_10011018; scaffold43552 TRF Tandem_Repeat 101004 101031 56 + . . scaffold43552 TRF Tandem_Repeat 112583 112613 53 + . . scaffold43552 TRF Tandem_Repeat 112646 112685 80 + . . scaffold43552 TRF Tandem_Repeat 115159 115196 51 + . . scaffold43552 TRF Tandem_Repeat 115377 116453 1146 + . . scaffold43552 TRF Tandem_Repeat 121960 122016 53 + . . scaffold43552 TRF Tandem_Repeat 121960 122016 57 + . . scaffold43552 WUBlastX LINE_L1-Tx1 125710 125898 78 + . . scaffold43552 WUBlastX LINE_L1-Tx1 125722 126132 59 + . . scaffold43552 TRF Tandem_Repeat 127065 127096 64 + . . scaffold43552 GLEAN promoter 131475 132474 0.267048 + . ID=CGI_10011019; scaffold43552 GLEAN mRNA 132475 141330 0.267048 + . ID=CGI_10011019; scaffold43552 TRF Tandem_Repeat 140685 140739 56 + . . scaffold43552 TRF Tandem_Repeat 140688 140743 62 + . . scaffold43552 TRF Tandem_Repeat 142837 142861 50 + . . scaffold43552 TRF Tandem_Repeat 157841 157928 58 + . . scaffold43552 TRF Tandem_Repeat 158700 158774 62 + . . scaffold43552 TRF Tandem_Repeat 158700 158774 80 + . . scaffold43552 TRF Tandem_Repeat 158702 158770 66 + . . scaffold43552 TRF Tandem_Repeat 158709 158774 71 + . . scaffold43552 WUBlastX LTR_Gypsy 163663 163770 77 + . . scaffold43552 WUBlastX LTR_Gypsy 163663 163821 53 + . . scaffold43552 WUBlastX LTR_Gypsy 163799 163918 23 + . . scaffold43552 WUBlastX LTR_Gypsy 164002 164916 271 + . . scaffold43552 WUBlastX DNA_TcMar-Tc1 165698 166555 333 + . . scaffold43552 WUBlastX DNA_TcMar-Tc1 166552 166671 25 + . . scaffold43552 WUBlastX DNA_TcMar-Tc1 166585 166671 48 + . . scaffold43552 TRF Tandem_Repeat 174748 174805 116 + . . scaffold43552 GLEAN mRNA 175595 179852 0.889887 - . ID=CGI_10011020; scaffold43552 TRF Tandem_Repeat 177389 177465 154 + . . scaffold43552 GLEAN promoter 179853 180852 0.889887 - . ID=CGI_10011020; scaffold43552 WUBlastX LINE_RTE-X 179867 180121 57 - . . scaffold43552 WUBlastX LINE_RTE-X 179906 180271 58 - . . scaffold43552 WUBlastX LINE_RTE-X 179906 180088 87 - . . scaffold43552 WUBlastX LINE_RTE-X 179906 180196 80 - . . scaffold43552 WUBlastX LINE_CR1 182454 182678 43 - . . scaffold43552 WUBlastX LINE_RTE-X 182511 182669 92 - . . scaffold43552 WUBlastX LINE_RTE-BovB 182677 182757 21 - . . scaffold43552 TRF Tandem_Repeat 191623 191679 114 + . . scaffold43552 WUBlastX DNA_En-Spm 200226 201602 349 - . . scaffold43552 WUBlastX DNA_En-Spm 200235 201383 429 - . . scaffold43552 WUBlastX DNA_En-Spm 200799 201851 251 - . . scaffold43552 GLEAN promoter 202091 203090 0.574406 + . ID=CGI_10011022; scaffold43552 GLEAN mRNA 203091 219517 0.574406 + . ID=CGI_10011022; scaffold43552 GLEAN mRNA 204428 227902 0.829194 - . ID=CGI_10011023; scaffold43552 WUBlastX DNA_Sola 207953 208138 38 - . . scaffold43552 WUBlastX DNA_Sola 208701 208838 63 - . . scaffold43552 TRF Tandem_Repeat 211786 211812 54 + . . scaffold43552 WUBlastX LINE_CR1 220199 220522 22 - . . scaffold43552 WUBlastX LTR_Copia 221437 221568 20 - . . scaffold43552 WUBlastX LTR_Gypsy 221461 222729 373 - . . scaffold43552 WUBlastX LTR_Gypsy-Cigr 221662 223950 873 - . . scaffold43552 WUBlastX LTR_Gypsy 223501 224043 135 - . . scaffold43552 WUBlastX LTR_Gypsy 225974 226159 22 - . . scaffold43552 WUBlastX LTR_Gypsy 226728 227303 143 - . . scaffold43552 GLEAN promoter 227903 228902 0.829194 - . ID=CGI_10011023; scaffold43552 GLEAN mRNA 231065 232451 1 - . ID=CGI_10011024; scaffold43552 GLEAN promoter 231728 232727 1 + . ID=CGI_10011025; scaffold43552 GLEAN promoter 232452 233451 1 - . ID=CGI_10011024; scaffold43552 GLEAN mRNA 232728 237831 1 + . ID=CGI_10011025; scaffold43552 TRF Tandem_Repeat 233532 233588 114 + . . scaffold43552 TRF Tandem_Repeat 237341 237386 56 + . . scaffold43552 GLEAN promoter 238697 239696 0.999372 + . ID=CGI_10011026; scaffold43552 GLEAN promoter 239555 240554 1 + . ID=CGI_10011027; scaffold43552 GLEAN mRNA 239697 239981 0.999372 + . ID=CGI_10011026; scaffold43552 GLEAN mRNA 240555 242140 1 + . ID=CGI_10011027; scaffold43552 TRF Tandem_Repeat 247858 251036 3845 + . . scaffold43552 TRF Tandem_Repeat 247858 251036 3855 + . . scaffold43552 TRF Tandem_Repeat 251213 251264 50 + . . scaffold43552 WUBlastX LINE_Penelope 253435 253581 52 - . . scaffold43552 WUBlastX LINE_Penelope 254749 255195 42 - . . scaffold43552 WUBlastX LINE_Penelope 254839 255231 128 - . . scaffold43552 WUBlastX LINE_Penelope 254896 255222 153 - . . scaffold43552 WUBlastX LINE_Penelope 256091 256534 20 - . . scaffold43552 WUBlastX LINE_Penelope 256160 256456 101 - . . scaffold43552 WUBlastX DNA_Academ 259362 259631 70 - . . scaffold43552 WUBlastX DNA_Academ 259700 259966 45 - . . scaffold43552 WUBlastX DNA_Academ 261497 261556 27 + . . scaffold43552 GLEAN promoter 274164 275163 1 + . ID=CGI_10011028; scaffold43552 GLEAN mRNA 275164 275879 1 + . ID=CGI_10011028; scaffold43552 TRF Tandem_Repeat 278303 278333 62 + . . scaffold43562 GLEAN promoter 1 920 0.694747 + . ID=CGI_10011029; scaffold43562 GLEAN mRNA 921 63783 0.694747 + . ID=CGI_10011029; scaffold43562 TRF Tandem_Repeat 7994 8041 87 + . . scaffold43562 TRF Tandem_Repeat 19274 19315 75 + . . scaffold43562 TRF Tandem_Repeat 22298 22327 60 + . . scaffold43562 TRF Tandem_Repeat 24270 24321 104 + . . scaffold43562 WUBlastX LINE_R2-Hero 62157 62963 115 + . . scaffold43562 WUBlastX LINE_R2-Hero 63080 63223 25 + . . scaffold43562 WUBlastX LINE_R2-Hero 63122 63223 42 + . . scaffold43562 TRF Tandem_Repeat 63526 63571 92 + . . scaffold43562 TRF Tandem_Repeat 65085 65156 135 + . . scaffold43562 GLEAN promoter 78017 79016 0.54219 + . ID=CGI_10011030; scaffold43562 GLEAN mRNA 79017 125003 0.54219 + . ID=CGI_10011030; scaffold43562 GLEAN mRNA 91878 98853 0.996199 - . ID=CGI_10011031; scaffold43562 GLEAN promoter 98854 99853 0.996199 - . ID=CGI_10011031; scaffold43562 TRF Tandem_Repeat 105220 106114 1521 + . . scaffold43562 GLEAN mRNA 115167 118520 0.991365 - . ID=CGI_10011032; scaffold43562 TRF Tandem_Repeat 117977 118065 178 + . . scaffold43562 GLEAN promoter 118521 119520 0.991365 - . ID=CGI_10011032; scaffold43562 GLEAN mRNA 120653 134746 0.91935 - . ID=CGI_10011033; scaffold43562 TRF Tandem_Repeat 124468 124543 152 + . . scaffold43562 TRF Tandem_Repeat 131727 131829 199 + . . scaffold43562 WUBlastX LINE_RTE-X 132303 132968 103 - . . scaffold43562 WUBlastX LINE_RTE-X 132426 134471 1323 - . . scaffold43562 GLEAN promoter 134747 135746 0.91935 - . ID=CGI_10011033; scaffold43562 GLEAN promoter 134775 135774 0.999236 + . ID=CGI_10011034; scaffold43562 GLEAN mRNA 135775 148426 0.999236 + . ID=CGI_10011034; scaffold43562 GLEAN mRNA 139233 142206 1 - . ID=CGI_10011035; scaffold43562 GLEAN promoter 142207 143206 1 - . ID=CGI_10011035; scaffold43562 GLEAN promoter 147449 148448 0.59015 + . ID=CGI_10011036; scaffold43562 TRF Tandem_Repeat 147650 147680 53 + . . scaffold43562 GLEAN mRNA 148449 149729 0.59015 + . ID=CGI_10011036; scaffold43562 TRF Tandem_Repeat 152860 152905 92 + . . scaffold43562 TRF Tandem_Repeat 154156 154195 80 + . . scaffold43562 GLEAN mRNA 156935 180007 0.944081 - . ID=CGI_10011037; scaffold43562 GLEAN promoter 165638 166637 0.999676 + . ID=CGI_10011038; scaffold43562 GLEAN mRNA 166638 176461 0.999676 + . ID=CGI_10011038; scaffold43562 WUBlastX LINE_CR1 167014 167130 33 + . . scaffold43562 WUBlastX LINE_CR1 167038 167133 34 + . . scaffold43562 WUBlastX LINE_CR1 167148 167780 180 + . . scaffold43562 WUBlastX LINE_CR1 167151 167594 193 + . . scaffold43562 WUBlastX DNA_TcMar-Marin 168065 168163 20 + . . scaffold43562 WUBlastX DNA_TcMar-Tc1 168288 168722 64 + . . scaffold43562 WUBlastX DNA_TcMar-Tc1 168745 169059 98 + . . scaffold43562 WUBlastX DNA_TcMar-Tc1 169062 169355 56 + . . scaffold43562 WUBlastX DNA_TcMar-Tc1 169089 169313 115 + . . scaffold43562 TRF Tandem_Repeat 172478 172557 144 + . . scaffold43562 TRF Tandem_Repeat 172926 173200 268 + . . scaffold43562 GLEAN promoter 180008 181007 0.944081 - . ID=CGI_10011037; scaffold43562 GLEAN mRNA 182983 184192 1 - . ID=CGI_10011039; scaffold43562 GLEAN promoter 184193 185192 1 - . ID=CGI_10011039; scaffold43562 TRF Tandem_Repeat 185037 185072 72 + . . scaffold43562 GLEAN promoter 189850 190849 0.999999 + . ID=CGI_10011040; scaffold43562 GLEAN mRNA 190850 194524 0.999999 + . ID=CGI_10011040; scaffold43562 GLEAN mRNA 198597 204008 1 - . ID=CGI_10011042; scaffold43562 GLEAN promoter 204009 205008 1 - . ID=CGI_10011042; scaffold43562 GLEAN promoter 205476 206475 0.999676 + . ID=CGI_10011043; scaffold43562 GLEAN mRNA 206476 211055 0.999676 + . ID=CGI_10011043; scaffold43562 GLEAN promoter 210532 211531 0.916029 + . ID=CGI_10011044; scaffold43562 GLEAN mRNA 211532 212196 0.916029 + . ID=CGI_10011044; scaffold43562 GLEAN promoter 211613 212612 0.497243 + . ID=CGI_10011045; scaffold43562 GLEAN mRNA 212613 216666 0.497243 + . ID=CGI_10011045; scaffold43562 GLEAN promoter 218796 219795 0.999286 + . ID=CGI_10011046; scaffold43562 GLEAN mRNA 219796 226184 0.999286 + . ID=CGI_10011046; scaffold43562 TRF Tandem_Repeat 219848 219887 80 + . . scaffold43562 TRF Tandem_Repeat 230039 230086 69 + . . scaffold43562 GLEAN mRNA 230299 246009 0.999675 - . ID=CGI_10011047; scaffold43562 TRF Tandem_Repeat 235836 235903 118 + . . scaffold43562 TRF Tandem_Repeat 236416 236487 126 + . . scaffold43562 TRF Tandem_Repeat 239336 239391 112 + . . scaffold43562 TRF Tandem_Repeat 243973 244016 88 + . . scaffold43562 GLEAN promoter 244272 245271 0.993519 + . ID=CGI_10011048; scaffold43562 GLEAN mRNA 245272 245646 0.993519 + . ID=CGI_10011048; scaffold43562 GLEAN promoter 246010 247009 0.999675 - . ID=CGI_10011047; scaffold43562 GLEAN mRNA 246221 246400 0.999372 - . ID=CGI_10011049; scaffold43562 GLEAN promoter 246401 247400 0.999372 - . ID=CGI_10011049; scaffold43562 GLEAN promoter 250559 251558 0.69447 + . ID=CGI_10011050; scaffold43562 GLEAN mRNA 251559 252788 0.69447 + . ID=CGI_10011050; scaffold43562 GLEAN promoter 256291 257290 0.69447 + . ID=CGI_10011051; scaffold43562 GLEAN mRNA 257291 258532 0.69447 + . ID=CGI_10011051; scaffold43562 TRF Tandem_Repeat 259983 260045 108 + . . scaffold43562 GLEAN promoter 262616 263615 1 + . ID=CGI_10011052; scaffold43562 GLEAN mRNA 263616 272435 1 + . ID=CGI_10011052; scaffold43562 TRF Tandem_Repeat 275765 275805 55 + . . scaffold43562 GLEAN promoter 278366 279365 1 + . ID=CGI_10011053; scaffold43562 GLEAN mRNA 279366 279608 1 + . ID=CGI_10011053; scaffold43574 GLEAN mRNA 1 2261 1 + . ID=CGI_10010868; scaffold43574 TRF Tandem_Repeat 854 1460 714 + . . scaffold43574 TRF Tandem_Repeat 3859 3999 282 + . . scaffold43574 WUBlastX LINE_CR1 20865 21416 105 + . . scaffold43574 WUBlastX LINE_L2 20949 21794 407 + . . scaffold43574 TRF Tandem_Repeat 24667 25950 1509 + . . scaffold43574 TRF Tandem_Repeat 35644 35690 85 + . . scaffold43574 TRF Tandem_Repeat 36381 36849 658 + . . scaffold43574 TRF Tandem_Repeat 37105 37485 358 + . . scaffold43574 TRF Tandem_Repeat 37116 37487 408 + . . scaffold43574 TRF Tandem_Repeat 37767 37811 90 + . . scaffold43574 GLEAN mRNA 42697 50661 0.999621 - . ID=CGI_10010869; scaffold43574 TRF Tandem_Repeat 43414 43686 413 + . . scaffold43574 TRF Tandem_Repeat 44167 44765 410 + . . scaffold43574 TRF Tandem_Repeat 44173 44689 361 + . . scaffold43574 TRF Tandem_Repeat 44185 44623 367 + . . scaffold43574 TRF Tandem_Repeat 45666 45700 61 + . . scaffold43574 GLEAN promoter 50662 51661 0.999621 - . ID=CGI_10010869; scaffold43574 GLEAN promoter 54399 55398 1 + . ID=CGI_10010870; scaffold43574 TRF Tandem_Repeat 55089 55141 106 + . . scaffold43574 GLEAN mRNA 55399 59480 1 + . ID=CGI_10010870; scaffold43574 TRF Tandem_Repeat 56826 57264 479 + . . scaffold43574 GLEAN mRNA 60310 65891 1 - . ID=CGI_10010871; scaffold43574 GLEAN promoter 65312 66311 0.999051 + . ID=CGI_10010872; scaffold43574 GLEAN promoter 65892 66891 1 - . ID=CGI_10010871; scaffold43574 GLEAN mRNA 66312 75657 0.999051 + . ID=CGI_10010872; scaffold43574 TRF Tandem_Repeat 71188 71432 298 + . . scaffold43574 TRF Tandem_Repeat 75961 76485 730 + . . scaffold43574 TRF Tandem_Repeat 80583 80748 296 + . . scaffold43574 TRF Tandem_Repeat 80820 81449 250 + . . scaffold43574 TRF Tandem_Repeat 81067 81365 342 + . . scaffold43574 TRF Tandem_Repeat 81297 81373 55 + . . scaffold43574 TRF Tandem_Repeat 87843 88061 303 + . . scaffold43574 TRF Tandem_Repeat 87855 88048 278 + . . scaffold43574 TRF Tandem_Repeat 89873 89931 109 + . . scaffold43574 GLEAN promoter 97052 98051 0.997818 + . ID=CGI_10010873; scaffold43574 GLEAN mRNA 98052 109151 0.997818 + . ID=CGI_10010873; scaffold43574 TRF Tandem_Repeat 103173 103234 124 + . . scaffold43574 GLEAN mRNA 111705 124669 0.999414 - . ID=CGI_10010874; scaffold43574 TRF Tandem_Repeat 113608 113771 301 + . . scaffold43574 TRF Tandem_Repeat 114002 114027 52 + . . scaffold43574 TRF Tandem_Repeat 114747 114771 50 + . . scaffold43574 TRF Tandem_Repeat 116004 116379 565 + . . scaffold43574 TRF Tandem_Repeat 116450 117197 1094 + . . scaffold43574 TRF Tandem_Repeat 122450 122723 305 + . . scaffold43574 TRF Tandem_Repeat 122452 122723 301 + . . scaffold43574 GLEAN promoter 124670 125669 0.999414 - . ID=CGI_10010874; scaffold43574 GLEAN mRNA 124903 128391 1 - . ID=CGI_10010875; scaffold43574 GLEAN promoter 128392 129391 1 - . ID=CGI_10010875; scaffold43574 TRF Tandem_Repeat 128476 128725 385 + . . scaffold43574 GLEAN promoter 134531 135530 0.353212 + . ID=CGI_10010876; scaffold43574 GLEAN mRNA 135531 146376 0.353212 + . ID=CGI_10010876; scaffold43574 TRF Tandem_Repeat 144362 144409 78 + . . scaffold43574 TRF Tandem_Repeat 145877 145935 57 + . . scaffold43574 GLEAN promoter 147526 148525 1 + . ID=CGI_10010877; scaffold43574 GLEAN mRNA 148526 150958 1 + . ID=CGI_10010877; scaffold43574 TRF Tandem_Repeat 148747 148815 120 + . . scaffold43574 GLEAN mRNA 153896 173891 0.999476 - . ID=CGI_10010878; scaffold43574 TRF Tandem_Repeat 154942 155028 115 + . . scaffold43574 TRF Tandem_Repeat 154943 155028 100 + . . scaffold43574 GLEAN promoter 161478 162477 0.614411 + . ID=CGI_10010879; scaffold43574 GLEAN mRNA 162478 174717 0.614411 + . ID=CGI_10010879; scaffold43574 TRF Tandem_Repeat 173212 173453 432 + . . scaffold43574 GLEAN promoter 173892 174891 0.999476 - . ID=CGI_10010878; scaffold43574 TRF Tandem_Repeat 175803 176088 407 + . . scaffold43574 TRF Tandem_Repeat 176615 176798 278 + . . scaffold43574 GLEAN promoter 178931 179930 0.814122 + . ID=CGI_10010880; scaffold43574 GLEAN mRNA 179931 197375 0.814122 + . ID=CGI_10010880; scaffold43574 TRF Tandem_Repeat 185415 185717 382 + . . scaffold43574 WUBlastX LINE_RTE-X 186582 187181 102 - . . scaffold43574 WUBlastX LINE_RTE-X 186708 187181 125 - . . scaffold43574 TRF Tandem_Repeat 187804 188416 966 + . . scaffold43574 TRF Tandem_Repeat 187804 188416 845 + . . scaffold43574 TRF Tandem_Repeat 189883 190088 403 + . . scaffold43574 TRF Tandem_Repeat 191131 191197 134 + . . scaffold43574 GLEAN mRNA 202207 215167 0.700735 - . ID=CGI_10010881; scaffold43574 TRF Tandem_Repeat 204178 204378 339 + . . scaffold43574 TRF Tandem_Repeat 214701 214739 51 + . . scaffold43574 GLEAN promoter 215168 216167 0.700735 - . ID=CGI_10010881; scaffold43574 TRF Tandem_Repeat 227912 228000 169 + . . scaffold43574 TRF Tandem_Repeat 229256 229316 122 + . . scaffold43574 GLEAN promoter 229613 230612 0.996968 + . ID=CGI_10010882; scaffold43574 GLEAN mRNA 230613 242715 0.996968 + . ID=CGI_10010882; scaffold43574 TRF Tandem_Repeat 233403 233819 320 + . . scaffold43574 TRF Tandem_Repeat 233545 233782 160 + . . scaffold43574 GLEAN mRNA 243594 245620 1 - . ID=CGI_10010883; scaffold43574 GLEAN promoter 245621 246620 1 - . ID=CGI_10010883; scaffold43574 WUBlastX LINE_L2 245676 245729 21 + . . scaffold43574 GLEAN mRNA 246020 254223 1 - . ID=CGI_10010884; scaffold43574 WUBlastX LINE_RTE-BovB 246241 246798 126 + . . scaffold43574 WUBlastX LINE_RTE-X 246328 248010 615 + . . scaffold43574 GLEAN promoter 254224 255223 1 - . ID=CGI_10010884; scaffold43574 GLEAN promoter 254916 255915 0.716745 + . ID=CGI_10010885; scaffold43574 TRF Tandem_Repeat 255279 255402 82 + . . scaffold43574 GLEAN mRNA 255916 259129 0.716745 + . ID=CGI_10010885; scaffold43574 GLEAN promoter 263140 264139 0.775763 + . ID=CGI_10010886; scaffold43574 GLEAN mRNA 264140 268252 0.775763 + . ID=CGI_10010886; scaffold43574 WUBlastX LINE_R2-Hero 265933 266412 35 - . . scaffold43574 WUBlastX LINE_R2-Hero 266375 266755 131 - . . scaffold43574 WUBlastX LINE_R2-Hero 266453 267079 143 - . . scaffold43574 WUBlastX DNA_IS4EU 273008 273133 81 + . . scaffold43574 WUBlastX DNA_IS4EU 273008 273181 55 + . . scaffold43574 WUBlastX DNA_IS4EU 273734 274003 127 + . . scaffold43574 WUBlastX LINE_L1-Tx1 275204 275347 29 - . . scaffold43574 WUBlastX LINE_L1-Tx1 275612 275911 66 - . . scaffold43574 WUBlastX LINE_L1-Tx1 275612 275785 76 - . . scaffold43574 WUBlastX LINE_L1 275615 275830 69 - . . scaffold43574 WUBlastX LINE_L1 275829 276149 41 - . . scaffold43574 WUBlastX LINE_L1 276003 276185 43 - . . scaffold43574 WUBlastX LINE_L1-Tx1 276027 276176 68 - . . scaffold43574 WUBlastX LINE_L1 276030 276143 74 - . . scaffold43576 TRF Tandem_Repeat 1644 2672 1526 + . . scaffold43576 TRF Tandem_Repeat 3398 4145 980 + . . scaffold43576 TRF Tandem_Repeat 7306 7500 168 + . . scaffold43576 WUBlastX LINE_RTE-X 8574 9470 225 + . . scaffold43576 TRF Tandem_Repeat 9499 9558 57 + . . scaffold43576 GLEAN promoter 12351 13350 0.999676 + . ID=CGI_10011123; scaffold43576 GLEAN mRNA 13351 17052 0.999676 + . ID=CGI_10011123; scaffold43576 GLEAN promoter 18670 19669 0.59015 + . ID=CGI_10011124; scaffold43576 GLEAN mRNA 19670 20452 0.59015 + . ID=CGI_10011124; scaffold43576 GLEAN mRNA 21149 29974 1 - . ID=CGI_10011125; scaffold43576 GLEAN promoter 29975 30974 1 - . ID=CGI_10011125; scaffold43576 WUBlastX DNA_MuDR 30728 30994 44 + . . scaffold43576 WUBlastX DNA_MuDR 30785 30982 71 + . . scaffold43576 WUBlastX DNA_MuDR 30961 31365 74 + . . scaffold43576 WUBlastX DNA_MuDR 31332 31511 66 + . . scaffold43576 WUBlastX DNA_IS4EU 31496 31903 32 + . . scaffold43576 WUBlastX DNA_NOF? 31839 32399 41 + . . scaffold43576 WUBlastX DNA_NOF 31881 32285 49 + . . scaffold43576 WUBlastX DNA_IS4EU 32019 32210 58 + . . scaffold43576 TRF Tandem_Repeat 36671 36732 92 + . . scaffold43576 GLEAN promoter 41816 42815 0.996044 + . ID=CGI_10011126; scaffold43576 GLEAN mRNA 42816 49546 0.996044 + . ID=CGI_10011126; scaffold43576 TRF Tandem_Repeat 52750 52927 82 + . . scaffold43576 TRF Tandem_Repeat 54108 54155 96 + . . scaffold43576 TRF Tandem_Repeat 54351 54396 92 + . . scaffold43576 TRF Tandem_Repeat 54559 54598 71 + . . scaffold43576 TRF Tandem_Repeat 55461 55589 79 + . . scaffold43576 GLEAN mRNA 56651 66123 0.990926 - . ID=CGI_10011127; scaffold43576 GLEAN promoter 65936 66935 1 + . ID=CGI_10011128; scaffold43576 GLEAN promoter 66124 67123 0.990926 - . ID=CGI_10011127; scaffold43576 GLEAN mRNA 66936 72215 1 + . ID=CGI_10011128; scaffold43576 TRF Tandem_Repeat 72428 72469 84 + . . scaffold43576 GLEAN mRNA 75346 77694 1 - . ID=CGI_10011129; scaffold43576 GLEAN promoter 77695 78694 1 - . ID=CGI_10011129; scaffold43576 GLEAN promoter 80480 81479 0.928383 + . ID=CGI_10011130; scaffold43576 GLEAN mRNA 81480 131391 0.928383 + . ID=CGI_10011130; scaffold43576 TRF Tandem_Repeat 81653 81702 55 + . . scaffold43576 TRF Tandem_Repeat 81701 81742 66 + . . scaffold43576 GLEAN mRNA 94075 95631 0.969704 - . ID=CGI_10011131; scaffold43576 GLEAN promoter 95632 96631 0.969704 - . ID=CGI_10011131; scaffold43576 TRF Tandem_Repeat 96025 96062 76 + . . scaffold43576 TRF Tandem_Repeat 109773 109805 57 + . . scaffold43576 TRF Tandem_Repeat 110897 110933 56 + . . scaffold43576 TRF Tandem_Repeat 112613 112660 87 + . . scaffold43576 TRF Tandem_Repeat 129110 129162 106 + . . scaffold43576 GLEAN promoter 137939 138938 1 + . ID=CGI_10011132; scaffold43576 GLEAN mRNA 138939 139991 1 + . ID=CGI_10011132; scaffold43576 GLEAN mRNA 152729 156314 0.650923 - . ID=CGI_10011133; scaffold43576 GLEAN promoter 156315 157314 0.650923 - . ID=CGI_10011133; scaffold43576 TRF Tandem_Repeat 160540 160578 78 + . . scaffold43576 TRF Tandem_Repeat 189574 189610 74 + . . scaffold43576 TRF Tandem_Repeat 195908 195945 76 + . . scaffold43576 GLEAN mRNA 197837 232524 1 - . ID=CGI_10011134; scaffold43576 WUBlastX DNA_TcMar-Tigge 215851 216090 31 + . . scaffold43576 WUBlastX DNA_TcMar-Pogo 215990 216403 102 + . . scaffold43576 WUBlastX DNA_TcMar-Pogo 216056 216415 136 + . . scaffold43576 WUBlastX DNA_TcMar-Pogo 216131 216418 203 + . . scaffold43576 GLEAN promoter 232525 233524 1 - . ID=CGI_10011134; scaffold43576 GLEAN promoter 233303 234302 0.777732 + . ID=CGI_10011135; scaffold43576 GLEAN mRNA 234303 237601 0.777732 + . ID=CGI_10011135; scaffold43576 WUBlastX LINE_RTE-BovB 245352 245537 24 + . . scaffold43576 WUBlastX LINE_RTE-X 245597 246493 130 + . . scaffold43576 WUBlastX LINE_RTE-X 245768 247105 626 + . . scaffold43576 WUBlastX DNA_Kolobok 252512 252676 45 - . . scaffold43576 TRF Tandem_Repeat 279007 279049 86 + . . scaffold43598 GLEAN mRNA 61 11135 0.999397 - . ID=CGI_10011322; scaffold43598 GLEAN promoter 11136 12135 0.999397 - . ID=CGI_10011322; scaffold43598 TRF Tandem_Repeat 12425 12512 87 + . . scaffold43598 WUBlastX LINE_RTE-X 16760 17020 74 + . . scaffold43598 WUBlastX LINE_RTE-X 16790 16984 80 + . . scaffold43598 WUBlastX LINE_RTE-X 35510 35872 33 - . . scaffold43598 WUBlastX LINE_RTE-X 35684 35854 67 - . . scaffold43598 WUBlastX LINE_RTE-X 35693 35953 49 - . . scaffold43598 TRF Tandem_Repeat 40317 40475 155 + . . scaffold43598 TRF Tandem_Repeat 40319 40472 104 + . . scaffold43598 TRF Tandem_Repeat 40326 40472 120 + . . scaffold43598 GLEAN mRNA 41682 46732 0.9966 - . ID=CGI_10011323; scaffold43598 TRF Tandem_Repeat 44337 44385 98 + . . scaffold43598 GLEAN promoter 46733 47732 0.9966 - . ID=CGI_10011323; scaffold43598 TRF Tandem_Repeat 48818 48876 77 + . . scaffold43598 TRF Tandem_Repeat 80098 80247 273 + . . scaffold43598 TRF Tandem_Repeat 80247 80278 64 + . . scaffold43598 TRF Tandem_Repeat 87602 87649 96 + . . scaffold43598 WUBlastX DNA_En-Spm 93273 93641 181 - . . scaffold43598 WUBlastX DNA_En-Spm 93668 94195 385 - . . scaffold43598 WUBlastX DNA_En-Spm 94177 94893 334 - . . scaffold43598 WUBlastX DNA_En-Spm 94180 94710 412 - . . scaffold43598 TRF Tandem_Repeat 122260 122309 91 + . . scaffold43598 WUBlastX LINE_RTE-X 124559 124738 25 + . . scaffold43598 WUBlastX LINE_RTE-X 124735 124821 25 + . . scaffold43598 WUBlastX LINE_RTE-X 125061 125366 20 + . . scaffold43598 WUBlastX LINE_RTE-X 125600 125875 21 + . . scaffold43598 WUBlastX LINE_RTE-X 125804 125875 29 + . . scaffold43598 TRF Tandem_Repeat 135001 135047 87 + . . scaffold43598 TRF Tandem_Repeat 147675 147724 57 + . . scaffold43598 WUBlastX LINE_RTE-X 161934 162407 27 - . . scaffold43598 WUBlastX LTR_Ngaro 162699 163652 333 - . . scaffold43598 WUBlastX LTR_Ngaro 163565 164266 418 - . . scaffold43598 WUBlastX LTR_Ngaro 164250 165137 555 - . . scaffold43598 WUBlastX LTR_Ngaro 165160 166035 198 - . . scaffold43598 WUBlastX LINE_Penelope 167044 167688 86 - . . scaffold43598 TRF Tandem_Repeat 171119 171159 82 + . . scaffold43598 TRF Tandem_Repeat 171157 171240 152 + . . scaffold43598 WUBlastX LINE_Penelope 177226 177387 42 - . . scaffold43598 WUBlastX LINE_Penelope 177410 177694 54 - . . scaffold43598 TRF Tandem_Repeat 187542 187595 90 + . . scaffold43598 GLEAN mRNA 190351 196795 0.281612 - . ID=CGI_10011324; scaffold43598 GLEAN promoter 196796 197795 0.281612 - . ID=CGI_10011324; scaffold43598 GLEAN mRNA 199307 200512 0.832042 - . ID=CGI_10011325; scaffold43598 GLEAN promoter 200513 201512 0.832042 - . ID=CGI_10011325; scaffold43598 TRF Tandem_Repeat 205528 205623 111 + . . scaffold43598 GLEAN mRNA 211416 217552 0.996012 - . ID=CGI_10011326; scaffold43598 TRF Tandem_Repeat 216266 216315 55 + . . scaffold43598 GLEAN promoter 217553 218552 0.996012 - . ID=CGI_10011326; scaffold43598 GLEAN mRNA 222196 234549 0.999333 - . ID=CGI_10011327; scaffold43598 TRF Tandem_Repeat 228444 228515 144 + . . scaffold43598 TRF Tandem_Repeat 229348 229382 70 + . . scaffold43598 GLEAN promoter 234550 235549 0.999333 - . ID=CGI_10011327; scaffold43598 GLEAN promoter 236834 237833 0.593391 + . ID=CGI_10011328; scaffold43598 GLEAN mRNA 237834 244631 0.593391 + . ID=CGI_10011328; scaffold43598 TRF Tandem_Repeat 238744 238800 89 + . . scaffold43598 GLEAN mRNA 255909 268040 0.999992 - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 261629 261733 103 + . . scaffold43598 TRF Tandem_Repeat 261723 261774 59 + . . scaffold43598 TRF Tandem_Repeat 263029 263184 276 + . . scaffold43598 TRF Tandem_Repeat 263650 264444 700 + . . scaffold43598 TRF Tandem_Repeat 265718 266673 1184 + . . scaffold43598 GLEAN promoter 268041 269040 0.999992 - . ID=CGI_10011329; scaffold43598 TRF Tandem_Repeat 268182 268258 118 + . . scaffold43598 TRF Tandem_Repeat 268860 269375 761 + . . scaffold43598 TRF Tandem_Repeat 271797 271844 71 + . . scaffold43598 GLEAN mRNA 273281 275151 1 - . ID=CGI_10011330; scaffold43598 GLEAN promoter 275152 276151 1 - . ID=CGI_10011330; scaffold43598 GLEAN mRNA 282110 287505 0.650711 - . ID=CGI_10011331; scaffold43598 GLEAN promoter 287506 288242 0.650711 - . ID=CGI_10011331; scaffold436 WUBlastX LINE_RTE-BovB 5300 5368 20 + . . scaffold436 WUBlastX LINE_RTE-BovB 5386 5457 39 + . . scaffold436 WUBlastX LINE_RTE-BovB 5863 5946 27 + . . scaffold436 WUBlastX LINE_RTE-BovB 5937 6743 112 + . . scaffold436 WUBlastX LINE_RTE-BovB 6198 6665 121 + . . scaffold436 TRF Tandem_Repeat 6996 7044 66 + . . scaffold436 WUBlastX LINE_L2 12689 13156 141 - . . scaffold436 WUBlastX LINE_L2 12863 13165 153 - . . scaffold436 TRF Tandem_Repeat 21455 21523 113 + . . scaffold43608 TRF Tandem_Repeat 535 645 66 + . . scaffold43608 WUBlastX LTR_Caulimoviru 6059 7030 63 + . . scaffold43608 WUBlastX LTR_DIRS 6272 7867 243 + . . scaffold43608 GLEAN mRNA 13222 18761 0.825558 - . ID=CGI_10011388; scaffold43608 WUBlastX DNA_TcMar-Marin 14610 14705 30 + . . scaffold43608 WUBlastX DNA_TcMar-Marin 15096 15458 83 + . . scaffold43608 GLEAN promoter 18762 19761 0.825558 - . ID=CGI_10011388; scaffold43608 GLEAN promoter 20608 21607 0.288553 + . ID=CGI_10011389; scaffold43608 TRF Tandem_Repeat 21264 21312 98 + . . scaffold43608 GLEAN mRNA 21608 30902 0.288553 + . ID=CGI_10011389; scaffold43608 GLEAN mRNA 26803 41467 0.396029 - . ID=CGI_10011390; scaffold43608 GLEAN promoter 30138 31137 1 + . ID=CGI_10011391; scaffold43608 GLEAN mRNA 31138 31890 1 + . ID=CGI_10011391; scaffold43608 GLEAN promoter 41468 42467 0.396029 - . ID=CGI_10011390; scaffold43608 GLEAN mRNA 47081 52282 1 - . ID=CGI_10011392; scaffold43608 TRF Tandem_Repeat 47375 47433 118 + . . scaffold43608 TRF Tandem_Repeat 50365 50417 88 + . . scaffold43608 GLEAN promoter 52283 53282 1 - . ID=CGI_10011392; scaffold43608 TRF Tandem_Repeat 53536 53574 78 + . . scaffold43608 TRF Tandem_Repeat 56926 56990 64 + . . scaffold43608 TRF Tandem_Repeat 57235 57280 92 + . . scaffold43608 TRF Tandem_Repeat 58833 58933 104 + . . scaffold43608 WUBlastX LINE_RTE-BovB 62171 62293 35 - . . scaffold43608 WUBlastX LINE_RTE-BovB 62287 62421 62 - . . scaffold43608 GLEAN mRNA 64930 79806 0.728287 - . ID=CGI_10011393; scaffold43608 TRF Tandem_Repeat 77059 77103 90 + . . scaffold43608 GLEAN promoter 79807 80806 0.728287 - . ID=CGI_10011393; scaffold43608 TRF Tandem_Repeat 81615 81688 130 + . . scaffold43608 GLEAN promoter 81726 82725 0.593386 + . ID=CGI_10011394; scaffold43608 GLEAN mRNA 82726 86457 0.593386 + . ID=CGI_10011394; scaffold43608 GLEAN mRNA 87826 88140 0.904812 - . ID=CGI_10011395; scaffold43608 GLEAN promoter 88141 89140 0.904812 - . ID=CGI_10011395; scaffold43608 GLEAN mRNA 89324 96389 0.917031 - . ID=CGI_10011396; scaffold43608 TRF Tandem_Repeat 90909 90949 50 + . . scaffold43608 GLEAN promoter 96390 97389 0.917031 - . ID=CGI_10011396; scaffold43608 TRF Tandem_Repeat 96686 96729 88 + . . scaffold43608 TRF Tandem_Repeat 97622 100275 2560 + . . scaffold43608 TRF Tandem_Repeat 105765 105839 78 + . . scaffold43608 GLEAN mRNA 106327 107202 0.99996 - . ID=CGI_10011397; scaffold43608 GLEAN promoter 107203 108202 0.99996 - . ID=CGI_10011397; scaffold43608 TRF Tandem_Repeat 118139 118185 76 + . . scaffold43608 TRF Tandem_Repeat 121869 122027 239 + . . scaffold43608 TRF Tandem_Repeat 121935 122237 382 + . . scaffold43608 TRF Tandem_Repeat 122095 122237 100 + . . scaffold43608 GLEAN mRNA 124868 125977 1 - . ID=CGI_10011398; scaffold43608 GLEAN promoter 125978 126977 1 - . ID=CGI_10011398; scaffold43608 TRF Tandem_Repeat 137460 137542 148 + . . scaffold43608 TRF Tandem_Repeat 144186 144224 78 + . . scaffold43608 GLEAN promoter 153871 154870 0.39073 + . ID=CGI_10011399; scaffold43608 GLEAN mRNA 154871 173677 0.39073 + . ID=CGI_10011399; scaffold43608 TRF Tandem_Repeat 173127 173193 56 + . . scaffold43608 TRF Tandem_Repeat 173145 173195 57 + . . scaffold43608 TRF Tandem_Repeat 179307 179350 70 + . . scaffold43608 TRF Tandem_Repeat 179311 179349 60 + . . scaffold43608 WUBlastX DNA_Helitron 183077 183328 78 - . . scaffold43608 WUBlastX RC_Helitron 183116 183346 116 - . . scaffold43608 WUBlastX RC_Helitron 183146 183397 87 - . . scaffold43608 WUBlastX RC_Helitron 184250 184732 78 - . . scaffold43608 WUBlastX RC_Helitron 184535 184711 84 - . . scaffold43608 WUBlastX RC_Helitron 184691 184804 31 - . . scaffold43608 WUBlastX RC_Helitron 184788 185027 53 - . . scaffold43608 WUBlastX LTR_Gypsy 190158 190337 80 + . . scaffold43608 WUBlastX LTR_Gypsy 192397 192495 20 + . . scaffold43608 WUBlastX LTR_Gypsy 193068 193325 39 + . . scaffold43608 WUBlastX LTR_Gypsy 193113 193325 58 + . . scaffold43608 WUBlastX LTR_Gypsy-Cigr 193167 194288 238 + . . scaffold43608 WUBlastX LTR_Gypsy 193761 194288 434 + . . scaffold43608 WUBlastX LTR_ERV1 193782 194420 143 + . . scaffold43608 WUBlastX LTR_Gypsy 194339 194554 37 + . . scaffold43608 GLEAN promoter 194518 195517 0.6496 + . ID=CGI_10011401; scaffold43608 WUBlastX LTR_Gypsy 194533 194664 35 + . . scaffold43608 GLEAN mRNA 194894 195750 0.999918 - . ID=CGI_10011400; scaffold43608 WUBlastX LTR_Copia 195440 195562 23 + . . scaffold43608 GLEAN mRNA 195518 195799 0.6496 + . ID=CGI_10011401; scaffold43608 GLEAN promoter 195751 196750 0.999918 - . ID=CGI_10011400; scaffold43608 WUBlastX LTR_Gypsy 204211 204654 193 - . . scaffold43608 WUBlastX LTR_Gypsy 204223 204777 113 - . . scaffold43608 WUBlastX LTR_Gypsy 204771 205304 99 - . . scaffold43608 WUBlastX LTR_Gypsy 204771 205184 124 - . . scaffold43608 WUBlastX LTR_Gypsy 205314 205424 23 - . . scaffold43608 WUBlastX LTR_Gypsy 205341 205442 32 - . . scaffold43608 WUBlastX LTR_Gypsy-Cigr 205766 205837 28 - . . scaffold43608 TRF Tandem_Repeat 206888 207668 1289 + . . scaffold43608 TRF Tandem_Repeat 208409 208443 70 + . . scaffold43608 GLEAN mRNA 220978 223383 0.992581 - . ID=CGI_10011402; scaffold43608 TRF Tandem_Repeat 222374 222399 52 + . . scaffold43608 GLEAN promoter 223384 224383 0.992581 - . ID=CGI_10011402; scaffold43608 WUBlastX LINE_RTE-X 229889 230083 21 - . . scaffold43608 WUBlastX LINE_RTE-X 230434 230649 64 - . . scaffold43608 WUBlastX LINE_RTE-X 230832 230954 29 - . . scaffold43608 WUBlastX LINE_RTE-X 230856 230963 37 - . . scaffold43608 WUBlastX LINE_RTE-X 230933 231304 47 - . . scaffold43608 WUBlastX LINE_RTE-X 230990 231430 97 - . . scaffold43608 WUBlastX DNA_Harbinger 240595 240978 130 + . . scaffold43608 WUBlastX DNA_Harbinger 240655 240978 161 + . . scaffold43608 WUBlastX DNA_Harbinger 240954 241478 353 + . . scaffold43608 WUBlastX DNA_Harbinger 241275 241550 75 + . . scaffold43608 GLEAN mRNA 242005 242621 0.727472 - . ID=CGI_10011404; scaffold43608 TRF Tandem_Repeat 242471 242509 78 + . . scaffold43608 GLEAN promoter 242622 243621 0.727472 - . ID=CGI_10011404; scaffold43608 WUBlastX DNA_Harbinger 242667 243080 176 - . . scaffold43608 TRF Tandem_Repeat 248507 248550 70 + . . scaffold43608 TRF Tandem_Repeat 248520 248553 50 + . . scaffold43608 TRF Tandem_Repeat 252220 252285 105 + . . scaffold43608 TRF Tandem_Repeat 252227 252286 75 + . . scaffold43608 TRF Tandem_Repeat 256096 256139 88 + . . scaffold43608 GLEAN mRNA 261022 261930 0.999966 - . ID=CGI_10011405; scaffold43608 GLEAN promoter 261931 262930 0.999966 - . ID=CGI_10011405; scaffold43608 TRF Tandem_Repeat 275654 275733 160 + . . scaffold43608 GLEAN promoter 278359 279358 1 + . ID=CGI_10011406; scaffold43608 GLEAN mRNA 279359 280696 1 + . ID=CGI_10011406; scaffold43608 WUBlastX LINE_CR1-L2 283944 284396 61 - . . scaffold43608 WUBlastX LINE_CR1-L2 284061 284396 67 - . . scaffold43608 WUBlastX LINE_CR1-L2 284115 284393 77 - . . scaffold43616 TRF Tandem_Repeat 492 1026 728 + . . scaffold43616 TRF Tandem_Repeat 492 1026 623 + . . scaffold43616 TRF Tandem_Repeat 532 973 561 + . . scaffold43616 GLEAN promoter 3389 4388 0.544777 + . ID=CGI_10011407; scaffold43616 GLEAN mRNA 4389 21802 0.544777 + . ID=CGI_10011407; scaffold43616 TRF Tandem_Repeat 7622 7786 156 + . . scaffold43616 TRF Tandem_Repeat 14385 14426 77 + . . scaffold43616 GLEAN mRNA 20818 22125 0.998274 - . ID=CGI_10011408; scaffold43616 GLEAN promoter 22126 23125 0.998274 - . ID=CGI_10011408; scaffold43616 GLEAN promoter 22579 23578 0.982091 + . ID=CGI_10011409; scaffold43616 GLEAN mRNA 23579 27083 0.982091 + . ID=CGI_10011409; scaffold43616 TRF Tandem_Repeat 24912 24968 105 + . . scaffold43616 TRF Tandem_Repeat 27321 27373 106 + . . scaffold43616 GLEAN promoter 28316 29315 0.982091 + . ID=CGI_10011410; scaffold43616 GLEAN mRNA 29316 30933 0.982091 + . ID=CGI_10011410; scaffold43616 TRF Tandem_Repeat 34592 34617 52 + . . scaffold43616 GLEAN mRNA 36151 54051 0.499226 - . ID=CGI_10011411; scaffold43616 TRF Tandem_Repeat 36683 36729 94 + . . scaffold43616 GLEAN promoter 37216 38215 0.671074 + . ID=CGI_10011412; scaffold43616 GLEAN mRNA 38216 48258 0.671074 + . ID=CGI_10011412; scaffold43616 GLEAN promoter 54052 55051 0.499226 - . ID=CGI_10011411; scaffold43616 TRF Tandem_Repeat 56525 57495 1591 + . . scaffold43616 TRF Tandem_Repeat 57509 57562 90 + . . scaffold43616 GLEAN mRNA 59001 61561 0.612867 - . ID=CGI_10011413; scaffold43616 GLEAN promoter 61562 62561 0.612867 - . ID=CGI_10011413; scaffold43616 TRF Tandem_Repeat 62615 62744 102 + . . scaffold43616 GLEAN mRNA 63851 75631 0.99672 - . ID=CGI_10011414; scaffold43616 GLEAN promoter 75632 76631 0.99672 - . ID=CGI_10011414; scaffold43616 GLEAN mRNA 82441 90496 0.813272 - . ID=CGI_10011415; scaffold43616 GLEAN promoter 90497 91496 0.813272 - . ID=CGI_10011415; scaffold43616 GLEAN promoter 91100 92099 1 + . ID=CGI_10011416; scaffold43616 TRF Tandem_Repeat 91139 91179 82 + . . scaffold43616 GLEAN mRNA 92100 93739 1 + . ID=CGI_10011416; scaffold43616 TRF Tandem_Repeat 92979 93048 124 + . . scaffold43616 GLEAN mRNA 94170 97154 0.999356 - . ID=CGI_10011417; scaffold43616 GLEAN promoter 97155 98154 0.999356 - . ID=CGI_10011417; scaffold43616 TRF Tandem_Repeat 97758 97828 142 + . . scaffold43616 GLEAN promoter 99431 100430 0.999372 + . ID=CGI_10011418; scaffold43616 GLEAN mRNA 100431 100622 0.999372 + . ID=CGI_10011418; scaffold43616 TRF Tandem_Repeat 103108 103148 75 + . . scaffold43616 TRF Tandem_Repeat 105019 105066 96 + . . scaffold43616 GLEAN mRNA 108182 116282 1 - . ID=CGI_10011419; scaffold43616 GLEAN promoter 116283 117282 1 - . ID=CGI_10011419; scaffold43616 GLEAN promoter 117950 118949 1 + . ID=CGI_10011420; scaffold43616 GLEAN mRNA 118950 127526 1 + . ID=CGI_10011420; scaffold43616 GLEAN mRNA 127190 127411 1 - . ID=CGI_10011421; scaffold43616 GLEAN promoter 127412 128411 1 - . ID=CGI_10011421; scaffold43616 GLEAN mRNA 134542 137817 0.582182 - . ID=CGI_10011422; scaffold43616 TRF Tandem_Repeat 137034 137065 64 + . . scaffold43616 GLEAN promoter 137818 138817 0.582182 - . ID=CGI_10011422; scaffold43616 GLEAN promoter 138008 139007 0.99992 + . ID=CGI_10011423; scaffold43616 GLEAN mRNA 139008 159202 0.99992 + . ID=CGI_10011423; scaffold43616 GLEAN mRNA 156958 162338 0.642217 - . ID=CGI_10011424; scaffold43616 GLEAN promoter 162339 163338 0.642217 - . ID=CGI_10011424; scaffold43616 WUBlastX LINE_RTE-X 168829 169167 37 + . . scaffold43616 GLEAN promoter 186064 187063 0.700682 + . ID=CGI_10011425; scaffold43616 GLEAN mRNA 187064 211275 0.700682 + . ID=CGI_10011425; scaffold43616 WUBlastX LINE_RTE-X 197050 197760 224 - . . scaffold43616 WUBlastX LINE_RTE-X 197744 198022 168 - . . scaffold43616 WUBlastX LINE_L2 198131 199444 60 - . . scaffold43616 WUBlastX LINE_RTE-X 198422 199459 627 - . . scaffold43616 WUBlastX LINE_RTE-X 199465 199872 209 - . . scaffold43616 WUBlastX LINE_RTE-X 205179 205319 32 - . . scaffold43616 WUBlastX LINE_RTE-X 205391 206047 405 - . . scaffold43616 GLEAN promoter 223912 224911 0.998638 + . ID=CGI_10011426; scaffold43616 GLEAN mRNA 224912 248262 0.998638 + . ID=CGI_10011426; scaffold43616 TRF Tandem_Repeat 230645 230682 76 + . . scaffold43616 TRF Tandem_Repeat 231011 231068 107 + . . scaffold43616 TRF Tandem_Repeat 233492 233525 52 + . . scaffold43616 TRF Tandem_Repeat 234953 235866 1385 + . . scaffold43616 GLEAN mRNA 250048 250653 1 - . ID=CGI_10011427; scaffold43616 GLEAN promoter 250654 251653 1 - . ID=CGI_10011427; scaffold43616 TRF Tandem_Repeat 251347 251380 68 + . . scaffold43616 TRF Tandem_Repeat 251458 251571 228 + . . scaffold43616 TRF Tandem_Repeat 251478 251556 52 + . . scaffold43616 GLEAN promoter 251506 252505 1 + . ID=CGI_10011428; scaffold43616 GLEAN mRNA 252506 260727 1 + . ID=CGI_10011428; scaffold43616 TRF Tandem_Repeat 264458 264516 91 + . . scaffold43616 TRF Tandem_Repeat 264458 264516 82 + . . scaffold43616 TRF Tandem_Repeat 267148 267205 116 + . . scaffold43616 TRF Tandem_Repeat 275613 275649 65 + . . scaffold43624 TRF Tandem_Repeat 603 633 62 + . . scaffold43624 TRF Tandem_Repeat 36087 36121 61 + . . scaffold43624 WUBlastX LINE_L1 36822 37433 106 + . . scaffold43624 WUBlastX LINE_L1-Tx1 36822 38264 91 + . . scaffold43624 WUBlastX LINE_L1-Tx1 36825 37754 95 + . . scaffold43624 WUBlastX DNA_Harbinger 39297 39332 21 - . . scaffold43624 WUBlastX DNA_Harbinger 39374 39613 124 - . . scaffold43624 WUBlastX DNA_Harbinger 39407 39673 93 - . . scaffold43624 WUBlastX DNA_Harbinger 39866 40276 66 - . . scaffold43624 WUBlastX DNA_Harbinger 39872 40198 154 - . . scaffold43624 GLEAN mRNA 45385 46015 0.988708 - . ID=CGI_10011503; scaffold43624 GLEAN promoter 45406 46405 0.999 + . ID=CGI_10011504; scaffold43624 GLEAN promoter 45986 46985 0.837632 + . ID=CGI_10011505; scaffold43624 GLEAN promoter 46016 47015 0.988708 - . ID=CGI_10011503; scaffold43624 GLEAN mRNA 46406 46870 0.999 + . ID=CGI_10011504; scaffold43624 GLEAN mRNA 46986 48383 0.837632 + . ID=CGI_10011505; scaffold43624 TRF Tandem_Repeat 80986 81019 50 + . . scaffold43624 TRF Tandem_Repeat 88806 88865 66 + . . scaffold43624 TRF Tandem_Repeat 91112 91166 110 + . . scaffold43624 TRF Tandem_Repeat 91369 91408 80 + . . scaffold43624 TRF Tandem_Repeat 91982 92040 75 + . . scaffold43624 TRF Tandem_Repeat 91982 92040 57 + . . scaffold43624 TRF Tandem_Repeat 95128 95816 945 + . . scaffold43624 TRF Tandem_Repeat 95823 95870 51 + . . scaffold43624 TRF Tandem_Repeat 95827 95869 50 + . . scaffold43624 TRF Tandem_Repeat 97078 97116 51 + . . scaffold43624 GLEAN promoter 105501 106500 0.981478 + . ID=CGI_10011506; scaffold43624 GLEAN mRNA 106501 110062 0.981478 + . ID=CGI_10011506; scaffold43624 WUBlastX DNA_P 106913 107155 71 + . . scaffold43624 TRF Tandem_Repeat 116984 117073 58 + . . scaffold43624 TRF Tandem_Repeat 119096 119195 191 + . . scaffold43624 TRF Tandem_Repeat 125349 125487 136 + . . scaffold43624 WUBlastX DNA_Harbinger 135771 135983 37 + . . scaffold43624 WUBlastX DNA_Harbinger 135983 136060 51 + . . scaffold43624 GLEAN mRNA 138051 148962 1 - . ID=CGI_10011507; scaffold43624 GLEAN promoter 148963 149962 1 - . ID=CGI_10011507; scaffold43624 TRF Tandem_Repeat 166130 166188 100 + . . scaffold43624 GLEAN mRNA 167749 173445 0.89182 - . ID=CGI_10011508; scaffold43624 TRF Tandem_Repeat 171548 171597 100 + . . scaffold43624 GLEAN promoter 173446 174445 0.89182 - . ID=CGI_10011508; scaffold43624 TRF Tandem_Repeat 175633 175670 76 + . . scaffold43624 WUBlastX LINE_RTE-BovB 182552 184165 1285 + . . scaffold43624 TRF Tandem_Repeat 186894 186924 62 + . . scaffold43624 WUBlastX LINE_L2 188038 188232 47 - . . scaffold43624 TRF Tandem_Repeat 204283 204333 95 + . . scaffold43624 TRF Tandem_Repeat 206565 206598 68 + . . scaffold43624 TRF Tandem_Repeat 208090 208148 97 + . . scaffold43624 TRF Tandem_Repeat 208456 208523 136 + . . scaffold43624 TRF Tandem_Repeat 210299 210345 94 + . . scaffold43624 GLEAN promoter 214085 215084 1 + . ID=CGI_10011509; scaffold43624 GLEAN mRNA 215085 218788 1 + . ID=CGI_10011509; scaffold43624 TRF Tandem_Repeat 219667 219717 102 + . . scaffold43624 WUBlastX LINE_RTE-X 224358 224498 76 - . . scaffold43624 WUBlastX LINE_RTE-X 224524 224817 82 - . . scaffold43624 TRF Tandem_Repeat 228153 228195 86 + . . scaffold43624 WUBlastX LINE_RTE-X 231416 231559 71 - . . scaffold43624 WUBlastX LINE_RTE-X 231763 231831 21 - . . scaffold43624 TRF Tandem_Repeat 252090 252155 66 + . . scaffold43624 TRF Tandem_Repeat 252260 252340 53 + . . scaffold43624 TRF Tandem_Repeat 253886 253939 81 + . . scaffold43624 TRF Tandem_Repeat 257490 257534 72 + . . scaffold43624 GLEAN mRNA 258135 260422 1 - . ID=CGI_10011510; scaffold43624 TRF Tandem_Repeat 259085 259110 52 + . . scaffold43624 GLEAN promoter 259735 260734 0.999805 + . ID=CGI_10011511; scaffold43624 GLEAN promoter 260423 261422 1 - . ID=CGI_10011510; scaffold43624 GLEAN mRNA 260735 263509 0.999805 + . ID=CGI_10011511; scaffold43624 GLEAN mRNA 264639 266906 0.999999 - . ID=CGI_10011512; scaffold43624 GLEAN promoter 266907 267906 0.999999 - . ID=CGI_10011512; scaffold43624 TRF Tandem_Repeat 268400 268454 64 + . . scaffold43624 GLEAN promoter 269854 270853 0.777277 + . ID=CGI_10011513; scaffold43624 TRF Tandem_Repeat 270314 270385 89 + . . scaffold43624 GLEAN mRNA 270854 273360 0.777277 + . ID=CGI_10011513; scaffold43624 GLEAN mRNA 274488 277663 0.999797 - . ID=CGI_10011514; scaffold43624 GLEAN promoter 277664 278663 0.999797 - . ID=CGI_10011514; scaffold43624 GLEAN mRNA 281450 291101 0.999421 - . ID=CGI_10011515; scaffold43624 WUBlastX LINE_L2 285044 285469 101 + . . scaffold43624 TRF Tandem_Repeat 290483 290549 134 + . . scaffold43624 GLEAN promoter 291102 292101 0.999421 - . ID=CGI_10011515; scaffold43624 TRF Tandem_Repeat 292704 292744 82 + . . scaffold43630 GLEAN promoter 10952 11951 0.905401 + . ID=CGI_10011516; scaffold43630 GLEAN mRNA 11952 16830 0.905401 + . ID=CGI_10011516; scaffold43630 GLEAN mRNA 16349 30979 0.442123 - . ID=CGI_10011517; scaffold43630 GLEAN promoter 19980 20979 1 + . ID=CGI_10011518; scaffold43630 GLEAN promoter 20620 21619 0.999978 + . ID=CGI_10011519; scaffold43630 GLEAN mRNA 20980 21610 1 + . ID=CGI_10011518; scaffold43630 GLEAN mRNA 21620 22009 0.999978 + . ID=CGI_10011519; scaffold43630 GLEAN promoter 30325 31324 0.999267 + . ID=CGI_10011520; scaffold43630 GLEAN promoter 30980 31979 0.442123 - . ID=CGI_10011517; scaffold43630 GLEAN mRNA 31325 31957 0.999267 + . ID=CGI_10011520; scaffold43630 TRF Tandem_Repeat 33041 33111 142 + . . scaffold43630 GLEAN promoter 33363 34362 1 + . ID=CGI_10011521; scaffold43630 GLEAN mRNA 34363 48378 1 + . ID=CGI_10011521; scaffold43630 TRF Tandem_Repeat 38248 38307 93 + . . scaffold43630 TRF Tandem_Repeat 45071 45610 410 + . . scaffold43630 TRF Tandem_Repeat 45201 45607 225 + . . scaffold43630 TRF Tandem_Repeat 45203 45610 326 + . . scaffold43630 TRF Tandem_Repeat 47933 47968 72 + . . scaffold43630 WUBlastX LINE_CR1-L2 53050 53256 57 + . . scaffold43630 WUBlastX LINE_CR1-L2 53250 53810 47 + . . scaffold43630 WUBlastX LINE_CR1-L2 53250 53708 60 + . . scaffold43630 WUBlastX LINE_RTE-X 56494 57039 174 - . . scaffold43630 GLEAN promoter 57459 58458 0.96224 + . ID=CGI_10011522; scaffold43630 GLEAN mRNA 58459 78169 0.96224 + . ID=CGI_10011522; scaffold43630 TRF Tandem_Repeat 69784 69841 116 + . . scaffold43630 TRF Tandem_Repeat 74305 74336 64 + . . scaffold43630 GLEAN promoter 82014 83013 0.962339 + . ID=CGI_10011523; scaffold43630 GLEAN mRNA 83014 97279 0.962339 + . ID=CGI_10011523; scaffold43630 TRF Tandem_Repeat 93097 93139 70 + . . scaffold43630 TRF Tandem_Repeat 93098 93147 57 + . . scaffold43630 TRF Tandem_Repeat 94829 95517 778 + . . scaffold43630 GLEAN mRNA 100142 110787 0.900448 - . ID=CGI_10011524; scaffold43630 TRF Tandem_Repeat 102326 102364 78 + . . scaffold43630 TRF Tandem_Repeat 109049 109095 94 + . . scaffold43630 GLEAN promoter 110788 111787 0.900448 - . ID=CGI_10011524; scaffold43630 TRF Tandem_Repeat 116334 116377 52 + . . scaffold43630 GLEAN promoter 123084 124083 0.996937 + . ID=CGI_10011525; scaffold43630 GLEAN mRNA 124084 143725 0.996937 + . ID=CGI_10011525; scaffold43630 TRF Tandem_Repeat 124653 124697 90 + . . scaffold43630 WUBlastX LINE_L1-Tx1 131512 131691 20 + . . scaffold43630 TRF Tandem_Repeat 135454 135528 150 + . . scaffold43630 GLEAN promoter 149048 150047 0.563743 + . ID=CGI_10011526; scaffold43630 TRF Tandem_Repeat 149650 149743 188 + . . scaffold43630 TRF Tandem_Repeat 149894 149935 66 + . . scaffold43630 TRF Tandem_Repeat 149948 149976 58 + . . scaffold43630 GLEAN mRNA 150048 167057 0.563743 + . ID=CGI_10011526; scaffold43630 TRF Tandem_Repeat 157866 157925 93 + . . scaffold43630 GLEAN promoter 171610 172609 0.0301586 + . ID=CGI_10011528; scaffold43630 GLEAN mRNA 172610 245452 0.0301586 + . ID=CGI_10011528; scaffold43630 WUBlastX LTR_Gypsy 173986 174753 148 - . . scaffold43630 TRF Tandem_Repeat 189030 189123 163 + . . scaffold43630 TRF Tandem_Repeat 189597 189642 83 + . . scaffold43630 TRF Tandem_Repeat 209290 209338 89 + . . scaffold43630 TRF Tandem_Repeat 209336 209368 66 + . . scaffold43630 TRF Tandem_Repeat 209564 209600 74 + . . scaffold43630 TRF Tandem_Repeat 214303 214346 88 + . . scaffold43630 TRF Tandem_Repeat 225435 225485 102 + . . scaffold43630 TRF Tandem_Repeat 241897 241936 80 + . . scaffold43630 WUBlastX DNA_TcMar-Tc1 243880 244899 370 - . . scaffold43630 TRF Tandem_Repeat 253753 253788 56 + . . scaffold43630 TRF Tandem_Repeat 260355 260409 110 + . . scaffold43630 TRF Tandem_Repeat 262883 262915 66 + . . scaffold43630 TRF Tandem_Repeat 263979 264220 157 + . . scaffold43630 TRF Tandem_Repeat 264232 264421 123 + . . scaffold43630 TRF Tandem_Repeat 267804 270278 3678 + . . scaffold43630 GLEAN mRNA 271707 272908 0.934712 - . ID=CGI_10011530; scaffold43630 TRF Tandem_Repeat 271863 271958 119 + . . scaffold43630 GLEAN promoter 272909 273908 0.934712 - . ID=CGI_10011530; scaffold43630 WUBlastX LTR_Gypsy 273065 275749 1050 - . . scaffold43630 WUBlastX LTR_Gypsy 275746 275856 66 - . . scaffold43630 WUBlastX LTR_Gypsy 275841 276146 97 - . . scaffold43630 WUBlastX LTR_Gypsy-Cigr 275847 276224 77 - . . scaffold43630 WUBlastX LTR_Gypsy 275853 276026 105 - . . scaffold43630 WUBlastX LTR_Gypsy 276215 276946 85 - . . scaffold43630 WUBlastX LTR_Gypsy 276386 277117 30 - . . scaffold43630 WUBlastX LTR_Gypsy 277480 277860 32 - . . scaffold43630 WUBlastX LTR_Copia 277573 277767 50 - . . scaffold43630 WUBlastX LTR_Caulimoviru 277576 277713 56 - . . scaffold43630 WUBlastX LTR_Gypsy 277910 278506 76 - . . scaffold43630 WUBlastX LTR_Gypsy 277922 278332 103 - . . scaffold43630 WUBlastX LINE_RTE-X 283675 284004 63 + . . scaffold43630 WUBlastX LINE_CR1 283726 284034 123 + . . scaffold43630 WUBlastX LINE_CR1 283774 284025 153 + . . scaffold43630 WUBlastX LINE_CR1 283940 284926 203 + . . scaffold43630 WUBlastX LINE_CR1 284096 285157 319 + . . scaffold43630 WUBlastX LINE_CR1-L2 284111 284974 564 + . . scaffold43630 WUBlastX LINE_I 284168 285337 43 + . . scaffold43630 WUBlastX LINE_RTE-X 285975 286265 47 - . . scaffold43630 TRF Tandem_Repeat 287549 287596 96 + . . scaffold43630 WUBlastX LINE_L2 288357 288662 48 - . . scaffold43630 WUBlastX LINE_L1 288357 288551 71 - . . scaffold43630 WUBlastX LINE_L1-Tx1 290944 291405 64 + . . scaffold43630 WUBlastX LINE_L1-Tx1 291013 291324 68 + . . scaffold43630 WUBlastX LINE_L1-Tx1 291088 291561 39 + . . scaffold43634 WUBlastX DNA_Maverick 12179 12448 31 - . . scaffold43634 WUBlastX DNA_Maverick 12191 12364 69 - . . scaffold43634 WUBlastX DNA_Maverick 12492 12653 83 - . . scaffold43634 WUBlastX DNA_Maverick 12546 12713 35 - . . scaffold43634 WUBlastX DNA_NOF 15102 15281 71 - . . scaffold43634 WUBlastX DNA_NOF 15700 15798 24 - . . scaffold43634 GLEAN promoter 55957 56956 0.67193 + . ID=CGI_10011531; scaffold43634 GLEAN mRNA 56957 73985 0.67193 + . ID=CGI_10011531; scaffold43634 TRF Tandem_Repeat 60571 60612 59 + . . scaffold43634 WUBlastX DNA_hAT-Ac 63349 63501 87 - . . scaffold43634 TRF Tandem_Repeat 69227 69548 366 + . . scaffold43634 TRF Tandem_Repeat 70082 70406 528 + . . scaffold43634 WUBlastX DNA_Maverick 71377 71787 81 + . . scaffold43634 WUBlastX DNA_Maverick 71539 71787 97 + . . scaffold43634 WUBlastX DNA_Maverick 71832 71984 69 + . . scaffold43634 TRF Tandem_Repeat 83791 83833 86 + . . scaffold43634 WUBlastX LTR_Gypsy 121010 122749 1408 + . . scaffold43634 TRF Tandem_Repeat 123689 123729 75 + . . scaffold43634 TRF Tandem_Repeat 125110 125442 355 + . . scaffold43634 GLEAN mRNA 127163 138612 0.867017 - . ID=CGI_10011533; scaffold43634 GLEAN promoter 128387 129386 0.999612 + . ID=CGI_10011534; scaffold43634 GLEAN mRNA 129387 136968 0.999612 + . ID=CGI_10011534; scaffold43634 GLEAN promoter 136277 137276 0.71235 + . ID=CGI_10011535; scaffold43634 GLEAN mRNA 137277 151342 0.71235 + . ID=CGI_10011535; scaffold43634 GLEAN promoter 138613 139612 0.867017 - . ID=CGI_10011533; scaffold43634 GLEAN mRNA 151120 151615 0.977127 - . ID=CGI_10011536; scaffold43634 GLEAN promoter 151616 152615 0.977127 - . ID=CGI_10011536; scaffold43634 TRF Tandem_Repeat 152095 152135 82 + . . scaffold43634 TRF Tandem_Repeat 156296 156482 184 + . . scaffold43634 TRF Tandem_Repeat 156326 156482 75 + . . scaffold43634 TRF Tandem_Repeat 157355 157395 82 + . . scaffold43634 TRF Tandem_Repeat 157561 157606 92 + . . scaffold43634 WUBlastX LINE_CR1 157808 159091 382 + . . scaffold43634 WUBlastX LINE_L2 157826 158848 771 + . . scaffold43634 WUBlastX LINE_L1 159295 159387 20 + . . scaffold43634 TRF Tandem_Repeat 164772 165004 68 + . . scaffold43634 TRF Tandem_Repeat 164772 165004 168 + . . scaffold43634 TRF Tandem_Repeat 164814 165026 88 + . . scaffold43634 TRF Tandem_Repeat 164984 165040 53 + . . scaffold43634 WUBlastX LTR_Gypsy 178334 178516 24 - . . scaffold43634 WUBlastX LTR_Gypsy-Cigr 178388 178516 42 - . . scaffold43634 WUBlastX LTR_Gypsy 178476 178895 74 - . . scaffold43634 WUBlastX LTR_Gypsy-Cigr 178599 178910 128 - . . scaffold43634 WUBlastX LTR_Gypsy 178915 179013 49 - . . scaffold43634 TRF Tandem_Repeat 195511 195557 85 + . . scaffold43634 GLEAN promoter 196619 197618 0.978248 + . ID=CGI_10011537; scaffold43634 GLEAN mRNA 197619 198284 0.978248 + . ID=CGI_10011537; scaffold43634 WUBlastX LINE_L2 199812 200021 73 + . . scaffold43634 TRF Tandem_Repeat 216469 216493 50 + . . scaffold43634 GLEAN mRNA 223292 224107 0.823589 - . ID=CGI_10011538; scaffold43634 WUBlastX LTR_Gypsy 223331 223855 70 - . . scaffold43634 WUBlastX LTR_Gypsy 223334 223774 72 - . . scaffold43634 WUBlastX LTR_Gypsy 223382 223942 66 - . . scaffold43634 GLEAN promoter 224108 225107 0.823589 - . ID=CGI_10011538; scaffold43634 TRF Tandem_Repeat 236025 236115 103 + . . scaffold43634 TRF Tandem_Repeat 236707 236735 58 + . . scaffold43634 TRF Tandem_Repeat 237945 238038 142 + . . scaffold43634 TRF Tandem_Repeat 247476 247525 84 + . . scaffold43634 GLEAN promoter 248587 249586 0.999528 + . ID=CGI_10011539; scaffold43634 TRF Tandem_Repeat 248835 248877 59 + . . scaffold43634 TRF Tandem_Repeat 249279 249312 68 + . . scaffold43634 GLEAN mRNA 249587 253486 0.999528 + . ID=CGI_10011539; scaffold43634 WUBlastX LINE_L2 253892 253945 21 + . . scaffold43634 WUBlastX LINE_L2 253951 254112 57 + . . scaffold43634 WUBlastX DNA_TcMar-Tc1 257191 257604 160 - . . scaffold43634 WUBlastX DNA_TcMar-Tc1 257537 258004 103 - . . scaffold43634 WUBlastX DNA_TcMar-Tc1 257540 257839 142 - . . scaffold43634 TRF Tandem_Repeat 259759 259825 125 + . . scaffold43634 TRF Tandem_Repeat 259837 259963 164 + . . scaffold43634 TRF Tandem_Repeat 276541 276565 50 + . . scaffold43634 TRF Tandem_Repeat 276731 276772 84 + . . scaffold43634 TRF Tandem_Repeat 284327 284381 110 + . . scaffold43634 TRF Tandem_Repeat 292667 292732 107 + . . scaffold43634 TRF Tandem_Repeat 292668 292729 63 + . . scaffold43634 TRF Tandem_Repeat 292674 292732 82 + . . scaffold43648 TRF Tandem_Repeat 878 995 53 + . . scaffold43648 GLEAN promoter 1740 2739 1 + . ID=CGI_10011579; scaffold43648 GLEAN mRNA 2740 4610 1 + . ID=CGI_10011579; scaffold43648 GLEAN mRNA 8418 18380 0.999852 - . ID=CGI_10011580; scaffold43648 GLEAN promoter 18381 19380 0.999852 - . ID=CGI_10011580; scaffold43648 GLEAN mRNA 18962 19498 0.999691 - . ID=CGI_10011581; scaffold43648 GLEAN promoter 19499 20498 0.999691 - . ID=CGI_10011581; scaffold43648 TRF Tandem_Repeat 21940 21978 78 + . . scaffold43648 TRF Tandem_Repeat 45103 45176 148 + . . scaffold43648 GLEAN mRNA 51661 65003 0.961077 - . ID=CGI_10011582; scaffold43648 TRF Tandem_Repeat 54456 54985 559 + . . scaffold43648 TRF Tandem_Repeat 59615 59667 83 + . . scaffold43648 GLEAN promoter 65004 66003 0.961077 - . ID=CGI_10011582; scaffold43648 GLEAN promoter 68569 69568 1 + . ID=CGI_10011583; scaffold43648 WUBlastX DNA_IS4EU 68645 69541 93 + . . scaffold43648 WUBlastX DNA_IS4EU 68999 69511 115 + . . scaffold43648 GLEAN mRNA 69569 70120 1 + . ID=CGI_10011583; scaffold43648 TRF Tandem_Repeat 72677 72731 51 + . . scaffold43648 TRF Tandem_Repeat 94578 94694 128 + . . scaffold43648 GLEAN promoter 96566 97565 0.502547 + . ID=CGI_10011584; scaffold43648 GLEAN mRNA 97566 98484 0.502547 + . ID=CGI_10011584; scaffold43648 WUBlastX DNA_Crypton 97686 98132 49 + . . scaffold43648 TRF Tandem_Repeat 98138 98172 70 + . . scaffold43648 WUBlastX LTR_Pao 114552 114737 20 + . . scaffold43648 WUBlastX LTR_Pao 114781 115923 337 + . . scaffold43648 WUBlastX LTR_Pao 115072 115875 400 + . . scaffold43648 WUBlastX LTR_Pao 115865 117496 863 + . . scaffold43648 WUBlastX LTR_Pao 117505 117717 120 + . . scaffold43648 WUBlastX LTR_Pao 117505 117672 129 + . . scaffold43648 WUBlastX LTR_Pao 117718 118104 277 + . . scaffold43648 WUBlastX LTR_Pao 117727 118173 250 + . . scaffold43648 WUBlastX LTR_Pao 118034 118411 80 + . . scaffold43648 WUBlastX LTR_Pao 118079 118327 141 + . . scaffold43648 WUBlastX LTR_Pao 118989 119057 21 + . . scaffold43648 GLEAN promoter 121845 122844 0.493556 + . ID=CGI_10011585; scaffold43648 GLEAN mRNA 122845 136776 0.493556 + . ID=CGI_10011585; scaffold43648 GLEAN mRNA 137477 145459 0.999922 - . ID=CGI_10011586; scaffold43648 GLEAN promoter 145460 146459 0.999922 - . ID=CGI_10011586; scaffold43648 GLEAN promoter 148571 149570 0.915759 + . ID=CGI_10011587; scaffold43648 GLEAN mRNA 149571 160327 0.915759 + . ID=CGI_10011587; scaffold43648 TRF Tandem_Repeat 157492 158698 1510 + . . scaffold43648 TRF Tandem_Repeat 161504 161561 116 + . . scaffold43648 TRF Tandem_Repeat 162180 162257 156 + . . scaffold43648 GLEAN mRNA 165161 167436 0.999676 - . ID=CGI_10011588; scaffold43648 GLEAN promoter 167437 168436 0.999676 - . ID=CGI_10011588; scaffold43648 GLEAN mRNA 168970 172145 0.999999 - . ID=CGI_10011589; scaffold43648 TRF Tandem_Repeat 169308 169406 64 + . . scaffold43648 TRF Tandem_Repeat 169319 169393 72 + . . scaffold43648 GLEAN promoter 172146 173145 0.999999 - . ID=CGI_10011589; scaffold43648 TRF Tandem_Repeat 172826 172859 68 + . . scaffold43648 GLEAN mRNA 173813 175519 0.999999 - . ID=CGI_10011590; scaffold43648 TRF Tandem_Repeat 174226 174282 87 + . . scaffold43648 GLEAN promoter 175520 176519 0.999999 - . ID=CGI_10011590; scaffold43648 TRF Tandem_Repeat 177916 178022 148 + . . scaffold43648 TRF Tandem_Repeat 180721 180786 132 + . . scaffold43648 GLEAN mRNA 186591 192448 0.463455 - . ID=CGI_10011591; scaffold43648 TRF Tandem_Repeat 187326 187376 84 + . . scaffold43648 GLEAN promoter 187540 188539 0.498825 + . ID=CGI_10011592; scaffold43648 GLEAN mRNA 188540 209568 0.498825 + . ID=CGI_10011592; scaffold43648 GLEAN promoter 192449 193448 0.463455 - . ID=CGI_10011591; scaffold43648 TRF Tandem_Repeat 208633 208678 51 + . . scaffold43648 TRF Tandem_Repeat 222555 222596 66 + . . scaffold43648 WUBlastX DNA_P 230901 231191 98 + . . scaffold43648 GLEAN mRNA 231599 237776 0.973881 - . ID=CGI_10011593; scaffold43648 WUBlastX DNA_Kolobok 232110 232649 122 + . . scaffold43648 WUBlastX DNA_Kolobok 232227 232643 152 + . . scaffold43648 WUBlastX DNA_Kolobok 232783 233010 43 + . . scaffold43648 WUBlastX DNA_Kolobok 232888 233013 73 + . . scaffold43648 WUBlastX DNA_Kolobok 235511 235732 56 + . . scaffold43648 WUBlastX DNA_Kolobok 235871 236047 77 + . . scaffold43648 WUBlastX DNA_Kolobok 236147 236326 84 + . . scaffold43648 WUBlastX DNA_Kolobok 236620 236706 20 + . . scaffold43648 WUBlastX DNA_Kolobok 236730 236921 70 - . . scaffold43648 GLEAN promoter 237777 238776 0.973881 - . ID=CGI_10011593; scaffold43648 TRF Tandem_Repeat 240000 240140 111 + . . scaffold43648 TRF Tandem_Repeat 241774 241906 110 + . . scaffold43648 TRF Tandem_Repeat 269471 269620 56 + . . scaffold43648 TRF Tandem_Repeat 275351 275537 313 + . . scaffold43648 TRF Tandem_Repeat 275351 275567 206 + . . scaffold43648 TRF Tandem_Repeat 277530 277796 363 + . . scaffold43648 TRF Tandem_Repeat 277533 277792 286 + . . scaffold43648 TRF Tandem_Repeat 278467 278688 293 + . . scaffold43648 TRF Tandem_Repeat 278468 278688 311 + . . scaffold43648 TRF Tandem_Repeat 279784 279829 51 + . . scaffold43648 TRF Tandem_Repeat 279991 280693 854 + . . scaffold43660 WUBlastX LTR_Gypsy 28 1548 1061 - . . scaffold43660 WUBlastX LTR_Gypsy-Cigr 313 3888 1939 - . . scaffold43660 WUBlastX LTR_Gypsy 3544 4026 116 - . . scaffold43660 WUBlastX LTR_Gypsy 4017 4115 20 - . . scaffold43660 WUBlastX LTR_Gypsy 4050 4907 152 - . . scaffold43660 WUBlastX LTR_Gypsy 4557 5168 105 - . . scaffold43660 GLEAN mRNA 33653 62551 0.969554 - . ID=CGI_10011660; scaffold43660 TRF Tandem_Repeat 37089 37388 503 + . . scaffold43660 TRF Tandem_Repeat 37089 37388 194 + . . scaffold43660 TRF Tandem_Repeat 37143 37388 206 + . . scaffold43660 WUBlastX LINE_Penelope 47015 47491 56 - . . scaffold43660 WUBlastX LINE_Penelope 47105 47539 58 - . . scaffold43660 TRF Tandem_Repeat 53340 53439 94 + . . scaffold43660 TRF Tandem_Repeat 54067 54433 321 + . . scaffold43660 GLEAN promoter 62552 63551 0.969554 - . ID=CGI_10011660; scaffold43660 TRF Tandem_Repeat 66950 67762 1466 + . . scaffold43660 GLEAN mRNA 73296 94423 0.650662 - . ID=CGI_10011661; scaffold43660 WUBlastX DNA_Kolobok-IS4 82247 82441 67 + . . scaffold43660 WUBlastX DNA_IS4EU 82470 82760 143 + . . scaffold43660 TRF Tandem_Repeat 84193 84217 50 + . . scaffold43660 TRF Tandem_Repeat 84616 84666 68 + . . scaffold43660 TRF Tandem_Repeat 85320 85366 94 + . . scaffold43660 TRF Tandem_Repeat 91755 91780 52 + . . scaffold43660 GLEAN promoter 92442 93441 0.96423 + . ID=CGI_10011662; scaffold43660 WUBlastX DNA_Harbinger 93326 93706 30 + . . scaffold43660 GLEAN mRNA 93442 94483 0.96423 + . ID=CGI_10011662; scaffold43660 GLEAN promoter 94424 95423 0.650662 - . ID=CGI_10011661; scaffold43660 TRF Tandem_Repeat 110945 111001 64 + . . scaffold43660 TRF Tandem_Repeat 110946 110998 56 + . . scaffold43660 WUBlastX LINE_RTE-X 111908 112120 23 - . . scaffold43660 WUBlastX LINE_RTE-X 112096 112281 31 - . . scaffold43660 WUBlastX LINE_RTE-X 112150 112281 44 - . . scaffold43660 TRF Tandem_Repeat 121287 121316 60 + . . scaffold43660 WUBlastX LTR_Ngaro 122820 123074 107 + . . scaffold43660 WUBlastX LTR_Ngaro 123280 123606 113 + . . scaffold43660 WUBlastX LTR_Ngaro 123609 123815 123 + . . scaffold43660 TRF Tandem_Repeat 124652 124683 64 + . . scaffold43660 GLEAN promoter 124748 125747 0.998274 + . ID=CGI_10011663; scaffold43660 GLEAN mRNA 125748 138289 0.998274 + . ID=CGI_10011663; scaffold43660 WUBlastX LINE_Penelope 126824 127081 34 - . . scaffold43660 WUBlastX LINE_Penelope 127145 127231 22 - . . scaffold43660 WUBlastX LINE_Penelope 127380 127655 51 - . . scaffold43660 WUBlastX LINE_Penelope 127434 127820 55 - . . scaffold43660 WUBlastX LINE_Penelope 127440 127637 64 - . . scaffold43660 WUBlastX LINE_Penelope 127639 127881 20 - . . scaffold43660 WUBlastX LINE_Penelope 127955 128191 33 - . . scaffold43660 WUBlastX LINE_Penelope 128021 128191 38 - . . scaffold43660 WUBlastX LINE_Penelope 128223 128357 34 - . . scaffold43660 WUBlastX LINE_Penelope 128223 128390 29 - . . scaffold43660 TRF Tandem_Repeat 132517 132657 196 + . . scaffold43660 WUBlastX LINE_L2 134787 135029 87 + . . scaffold43660 GLEAN mRNA 143844 148889 0.999993 - . ID=CGI_10011664; scaffold43660 GLEAN promoter 148890 149889 0.999993 - . ID=CGI_10011664; scaffold43660 GLEAN mRNA 149067 151443 0.999997 - . ID=CGI_10011665; scaffold43660 GLEAN promoter 151444 152443 0.999997 - . ID=CGI_10011665; scaffold43660 TRF Tandem_Repeat 153929 154039 89 + . . scaffold43660 TRF Tandem_Repeat 155745 155795 102 + . . scaffold43660 WUBlastX LINE_RTE-X 155974 156300 41 - . . scaffold43660 WUBlastX LINE_RTE-X 156061 156294 44 - . . scaffold43660 WUBlastX LINE_RTE-X 156106 156279 62 - . . scaffold43660 GLEAN mRNA 158768 189009 0.999991 - . ID=CGI_10011666; scaffold43660 TRF Tandem_Repeat 164153 164206 67 + . . scaffold43660 TRF Tandem_Repeat 164156 164201 67 + . . scaffold43660 WUBlastX LINE_L1-Tx1 170164 170556 31 - . . scaffold43660 WUBlastX DNA_hAT-Blackja 182374 182454 37 - . . scaffold43660 TRF Tandem_Repeat 184141 184182 84 + . . scaffold43660 GLEAN promoter 189010 190009 0.999991 - . ID=CGI_10011666; scaffold43660 TRF Tandem_Repeat 189218 189247 60 + . . scaffold43660 GLEAN promoter 190399 191398 0.824018 + . ID=CGI_10011667; scaffold43660 GLEAN mRNA 191399 194980 0.824018 + . ID=CGI_10011667; scaffold43660 GLEAN mRNA 197056 203524 0.999676 - . ID=CGI_10011668; scaffold43660 TRF Tandem_Repeat 201391 201415 50 + . . scaffold43660 GLEAN promoter 203525 204524 0.999676 - . ID=CGI_10011668; scaffold43660 TRF Tandem_Repeat 211547 211596 100 + . . scaffold43660 TRF Tandem_Repeat 217181 217219 71 + . . scaffold43660 TRF Tandem_Repeat 218263 218300 67 + . . scaffold43660 TRF Tandem_Repeat 221291 221331 82 + . . scaffold43660 GLEAN mRNA 226088 237077 1 - . ID=CGI_10011669; scaffold43660 WUBlastX LINE_Penelope 227276 227392 46 + . . scaffold43660 TRF Tandem_Repeat 229491 229582 123 + . . scaffold43660 TRF Tandem_Repeat 229662 229819 160 + . . scaffold43660 TRF Tandem_Repeat 229871 229997 146 + . . scaffold43660 TRF Tandem_Repeat 230091 230185 104 + . . scaffold43660 GLEAN promoter 237078 238077 1 - . ID=CGI_10011669; scaffold43660 GLEAN mRNA 238593 243558 0.998753 - . ID=CGI_10011670; scaffold43660 TRF Tandem_Repeat 242318 242377 106 + . . scaffold43660 GLEAN promoter 243559 244558 0.998753 - . ID=CGI_10011670; scaffold43660 GLEAN mRNA 243562 254433 0.99966 - . ID=CGI_10011671; scaffold43660 TRF Tandem_Repeat 244225 244832 1157 + . . scaffold43660 WUBlastX LTR_Ngaro 245036 245893 175 + . . scaffold43660 WUBlastX LTR_Ngaro 245924 246067 109 + . . scaffold43660 TRF Tandem_Repeat 254056 254104 98 + . . scaffold43660 GLEAN promoter 254434 255433 0.99966 - . ID=CGI_10011671; scaffold43660 GLEAN mRNA 256465 260339 0.998023 - . ID=CGI_10011672; scaffold43660 GLEAN promoter 260340 261339 0.998023 - . ID=CGI_10011672; scaffold43660 GLEAN mRNA 262639 273396 0.998201 - . ID=CGI_10011673; scaffold43660 TRF Tandem_Repeat 264161 264204 88 + . . scaffold43660 TRF Tandem_Repeat 265894 266855 1053 + . . scaffold43660 WUBlastX DNA_TcMar-Fot1 270568 270978 97 + . . scaffold43660 WUBlastX DNA_TcMar-Fot1 270661 271050 91 + . . scaffold43660 WUBlastX DNA_TcMar-Fot1 271367 271429 23 + . . scaffold43660 GLEAN promoter 273397 274396 0.998201 - . ID=CGI_10011673; scaffold43660 WUBlastX DNA_IS4EU 276735 277397 25 + . . scaffold43660 WUBlastX DNA_IS4EU 277456 277728 91 + . . scaffold43660 WUBlastX DNA_TcMar-Tc1 278656 278961 187 - . . scaffold43660 WUBlastX DNA_TcMar-Tc1 278949 279086 48 - . . scaffold43660 WUBlastX DNA_TcMar-Tc1 278994 279644 268 - . . scaffold43660 GLEAN promoter 282580 283579 0.673923 + . ID=CGI_10011674; scaffold43660 GLEAN mRNA 283580 294705 0.673923 + . ID=CGI_10011674; scaffold43660 TRF Tandem_Repeat 286255 286329 150 + . . scaffold43662 GLEAN mRNA 16 393 0.836238 - . ID=CGI_10011602; scaffold43662 WUBlastX DNA_Kolobok-Hyd 88 570 43 - . . scaffold43662 WUBlastX DNA_Kolobok-Hyd 217 570 63 - . . scaffold43662 GLEAN promoter 394 1393 0.836238 - . ID=CGI_10011602; scaffold43662 WUBlastX DNA_hAT-Tip100 17700 18164 87 + . . scaffold43662 WUBlastX DNA_hAT-Tip100 17862 18164 101 + . . scaffold43662 WUBlastX DNA_hAT-Tip100 17874 18272 68 + . . scaffold43662 TRF Tandem_Repeat 24663 24702 80 + . . scaffold43662 WUBlastX LTR_DIRS 27913 28986 62 + . . scaffold43662 WUBlastX LTR_DIRS 28039 28884 112 + . . scaffold43662 WUBlastX DNA_TcMar-Tc1 29226 29378 22 + . . scaffold43662 WUBlastX DNA_IS4EU 31233 31550 33 + . . scaffold43662 WUBlastX DNA_IS4EU 31326 31547 95 + . . scaffold43662 WUBlastX DNA_IS4EU 31562 31726 57 + . . scaffold43662 WUBlastX DNA_IS4EU 31592 31795 81 + . . scaffold43662 WUBlastX DNA_IS4EU 31592 31732 113 + . . scaffold43662 WUBlastX LTR_Gypsy 33694 34014 103 + . . scaffold43662 WUBlastX LTR_Gypsy 33745 34035 153 + . . scaffold43662 WUBlastX LTR_Gypsy 33748 34350 94 + . . scaffold43662 TRF Tandem_Repeat 35699 35789 100 + . . scaffold43662 WUBlastX DNA_Harbinger 38896 39069 30 - . . scaffold43662 WUBlastX DNA_Harbinger 38938 39054 67 - . . scaffold43662 WUBlastX DNA_hAT-Blackja 44388 44561 25 - . . scaffold43662 WUBlastX DNA_hAT-Blackja 44588 44857 58 - . . scaffold43662 WUBlastX DNA_hAT-Blackja 44874 45128 52 - . . scaffold43662 WUBlastX DNA_hAT-Blackja 45205 45321 45 - . . scaffold43662 WUBlastX LTR_Gypsy 46759 47076 72 + . . scaffold43662 WUBlastX LTR_Gypsy 46810 47103 154 + . . scaffold43662 WUBlastX LTR_Gypsy 46813 47253 97 + . . scaffold43662 WUBlastX DNA_Harbinger 47385 47690 20 + . . scaffold43662 WUBlastX DNA_hAT-Tip100? 50026 50445 51 + . . scaffold43662 TRF Tandem_Repeat 84353 84408 69 + . . scaffold43662 TRF Tandem_Repeat 85141 85169 58 + . . scaffold43662 GLEAN promoter 86641 87640 0.733495 + . ID=CGI_10011603; scaffold43662 GLEAN mRNA 87641 87895 0.733495 + . ID=CGI_10011603; scaffold43662 TRF Tandem_Repeat 88876 88914 78 + . . scaffold43662 TRF Tandem_Repeat 107277 107316 80 + . . scaffold43662 TRF Tandem_Repeat 108890 108935 92 + . . scaffold43662 TRF Tandem_Repeat 109454 109499 92 + . . scaffold43662 GLEAN promoter 110759 111758 1 + . ID=CGI_10011604; scaffold43662 GLEAN mRNA 111759 115335 1 + . ID=CGI_10011604; scaffold43662 TRF Tandem_Repeat 120737 120796 95 + . . scaffold43662 WUBlastX LTR_DIRS 144716 145075 67 - . . scaffold43662 WUBlastX LTR_DIRS 144860 145120 86 - . . scaffold43662 WUBlastX LINE_I 148543 148845 46 - . . scaffold43662 WUBlastX LINE_CR1 148597 148854 79 - . . scaffold43662 WUBlastX LINE_CR1 148648 148854 178 - . . scaffold43662 WUBlastX LINE_CR1 148847 150385 328 - . . scaffold43662 WUBlastX LINE_CR1 150387 151460 451 - . . scaffold43662 WUBlastX LINE_CR1 150390 151730 357 - . . scaffold43662 GLEAN promoter 161708 162707 1 + . ID=CGI_10011606; scaffold43662 GLEAN mRNA 162708 169029 1 + . ID=CGI_10011606; scaffold43662 TRF Tandem_Repeat 169240 169290 93 + . . scaffold43662 GLEAN mRNA 170525 186657 0.306637 - . ID=CGI_10011607; scaffold43662 GLEAN promoter 185280 186279 1 + . ID=CGI_10011608; scaffold43662 GLEAN mRNA 186280 186900 1 + . ID=CGI_10011608; scaffold43662 GLEAN promoter 186658 187657 0.306637 - . ID=CGI_10011607; scaffold43662 TRF Tandem_Repeat 188399 188459 122 + . . scaffold43662 TRF Tandem_Repeat 202188 202264 131 + . . scaffold43662 GLEAN promoter 212374 213373 0.999998 + . ID=CGI_10011609; scaffold43662 GLEAN mRNA 213374 213790 0.999998 + . ID=CGI_10011609; scaffold43662 TRF Tandem_Repeat 217002 217227 124 + . . scaffold43662 TRF Tandem_Repeat 220607 220649 86 + . . scaffold43662 GLEAN promoter 225534 226533 0.71694 + . ID=CGI_10011610; scaffold43662 GLEAN mRNA 226534 227746 0.71694 + . ID=CGI_10011610; scaffold43662 TRF Tandem_Repeat 231467 231516 93 + . . scaffold43662 TRF Tandem_Repeat 232641 232692 97 + . . scaffold43662 TRF Tandem_Repeat 236650 236718 138 + . . scaffold43662 TRF Tandem_Repeat 242008 242102 183 + . . scaffold43662 TRF Tandem_Repeat 247424 247455 55 + . . scaffold43662 GLEAN promoter 252072 253071 0.389204 + . ID=CGI_10011611; scaffold43662 GLEAN mRNA 253072 260338 0.389204 + . ID=CGI_10011611; scaffold43662 TRF Tandem_Repeat 261161 261218 107 + . . scaffold43662 WUBlastX LINE_RTE-BovB 262604 262786 125 - . . scaffold43662 WUBlastX LINE_RTE-BovB 262604 262819 84 - . . scaffold43662 TRF Tandem_Repeat 264077 264112 54 + . . scaffold43662 GLEAN promoter 274556 275555 0.996819 + . ID=CGI_10011612; scaffold43662 GLEAN mRNA 275556 287338 0.996819 + . ID=CGI_10011612; scaffold43662 TRF Tandem_Repeat 283635 283680 92 + . . scaffold43662 TRF Tandem_Repeat 283680 283723 88 + . . scaffold43664 GLEAN promoter 2494 3493 0.998077 + . ID=CGI_10011704; scaffold43664 GLEAN mRNA 3494 5146 0.998077 + . ID=CGI_10011704; scaffold43664 GLEAN promoter 9620 10619 0.999803 + . ID=CGI_10011705; scaffold43664 GLEAN mRNA 10620 10934 0.999803 + . ID=CGI_10011705; scaffold43664 TRF Tandem_Repeat 17177 17214 76 + . . scaffold43664 TRF Tandem_Repeat 28075 28138 101 + . . scaffold43664 GLEAN promoter 33195 34194 1 + . ID=CGI_10011706; scaffold43664 GLEAN mRNA 34195 34512 1 + . ID=CGI_10011706; scaffold43664 TRF Tandem_Repeat 36261 36306 92 + . . scaffold43664 TRF Tandem_Repeat 42111 42146 63 + . . scaffold43664 TRF Tandem_Repeat 43814 43839 52 + . . scaffold43664 GLEAN mRNA 68147 72455 1 - . ID=CGI_10011707; scaffold43664 TRF Tandem_Repeat 68383 68450 75 + . . scaffold43664 TRF Tandem_Repeat 68385 68450 87 + . . scaffold43664 GLEAN promoter 72456 73455 1 - . ID=CGI_10011707; scaffold43664 TRF Tandem_Repeat 76849 76896 96 + . . scaffold43664 GLEAN promoter 79145 80144 1 + . ID=CGI_10011708; scaffold43664 GLEAN mRNA 80145 94977 1 + . ID=CGI_10011708; scaffold43664 TRF Tandem_Repeat 98425 98458 59 + . . scaffold43664 GLEAN mRNA 101877 107752 0.999599 - . ID=CGI_10011709; scaffold43664 GLEAN promoter 107753 108752 0.999599 - . ID=CGI_10011709; scaffold43664 GLEAN promoter 113353 114352 1 + . ID=CGI_10011710; scaffold43664 GLEAN mRNA 114353 120740 1 + . ID=CGI_10011710; scaffold43664 TRF Tandem_Repeat 115392 115573 247 + . . scaffold43664 TRF Tandem_Repeat 116667 116705 78 + . . scaffold43664 TRF Tandem_Repeat 117083 117129 60 + . . scaffold43664 TRF Tandem_Repeat 120202 120249 96 + . . scaffold43664 GLEAN promoter 121771 122770 0.744516 + . ID=CGI_10011711; scaffold43664 GLEAN mRNA 122771 131645 0.744516 + . ID=CGI_10011711; scaffold43664 TRF Tandem_Repeat 130580 130664 170 + . . scaffold43664 TRF Tandem_Repeat 132738 132863 144 + . . scaffold43664 TRF Tandem_Repeat 135598 135743 81 + . . scaffold43664 TRF Tandem_Repeat 136757 136802 92 + . . scaffold43664 GLEAN mRNA 144018 153259 0.999903 - . ID=CGI_10011712; scaffold43664 TRF Tandem_Repeat 149741 149952 131 + . . scaffold43664 TRF Tandem_Repeat 149825 150030 138 + . . scaffold43664 TRF Tandem_Repeat 151480 151506 54 + . . scaffold43664 GLEAN promoter 153260 154259 0.999903 - . ID=CGI_10011712; scaffold43664 TRF Tandem_Repeat 155158 155219 124 + . . scaffold43664 GLEAN promoter 161509 162508 0.941403 + . ID=CGI_10011713; scaffold43664 GLEAN mRNA 162509 184639 0.941403 + . ID=CGI_10011713; scaffold43664 TRF Tandem_Repeat 165889 166312 598 + . . scaffold43664 TRF Tandem_Repeat 172619 172945 385 + . . scaffold43664 TRF Tandem_Repeat 181309 181553 358 + . . scaffold43664 TRF Tandem_Repeat 192200 192227 56 + . . scaffold43664 TRF Tandem_Repeat 193199 193226 56 + . . scaffold43664 TRF Tandem_Repeat 193286 193344 118 + . . scaffold43664 TRF Tandem_Repeat 193775 194092 203 + . . scaffold43664 GLEAN promoter 195463 196462 0.87318 + . ID=CGI_10011714; scaffold43664 GLEAN mRNA 196463 198185 0.87318 + . ID=CGI_10011714; scaffold43664 GLEAN mRNA 201340 202203 0.999928 - . ID=CGI_10011715; scaffold43664 GLEAN promoter 202204 203203 0.999928 - . ID=CGI_10011715; scaffold43664 GLEAN mRNA 202264 203022 0.999367 - . ID=CGI_10011716; scaffold43664 GLEAN promoter 203023 204022 0.999367 - . ID=CGI_10011716; scaffold43664 GLEAN mRNA 204407 215793 0.656307 - . ID=CGI_10011717; scaffold43664 WUBlastX LINE_L1-Tx1 213728 213916 36 + . . scaffold43664 WUBlastX LINE_RTE-X 213794 213946 66 + . . scaffold43664 WUBlastX LINE_RTE-X 213931 214167 71 + . . scaffold43664 WUBlastX LINE_RTE-X 213981 214649 136 + . . scaffold43664 WUBlastX LINE_RTE-X 214179 214898 97 + . . scaffold43664 WUBlastX LINE_RTE-X 214197 214661 177 + . . scaffold43664 GLEAN promoter 215794 216793 0.656307 - . ID=CGI_10011717; scaffold43664 GLEAN mRNA 218209 231310 0.844003 - . ID=CGI_10011718; scaffold43664 GLEAN promoter 231311 232310 0.844003 - . ID=CGI_10011718; scaffold43664 WUBlastX LTR_Gypsy-Cigr 231507 233633 1374 + . . scaffold43664 WUBlastX LTR_Copia 233469 233669 38 + . . scaffold43664 TRF Tandem_Repeat 234683 234733 93 + . . scaffold43664 GLEAN promoter 235966 236965 1 + . ID=CGI_10011719; scaffold43664 GLEAN mRNA 236966 237679 1 + . ID=CGI_10011719; scaffold43664 GLEAN promoter 240872 241871 1 + . ID=CGI_10011720; scaffold43664 GLEAN mRNA 241872 245552 1 + . ID=CGI_10011720; scaffold43664 TRF Tandem_Repeat 249877 249920 88 + . . scaffold43664 GLEAN promoter 251147 252146 0.494472 + . ID=CGI_10011721; scaffold43664 GLEAN mRNA 252147 258856 0.494472 + . ID=CGI_10011721; scaffold43664 TRF Tandem_Repeat 255741 255897 269 + . . scaffold43664 TRF Tandem_Repeat 255746 255897 106 + . . scaffold43664 TRF Tandem_Repeat 260003 260094 139 + . . scaffold43664 GLEAN promoter 265473 266472 0.9673 + . ID=CGI_10011722; scaffold43664 GLEAN mRNA 266473 268197 0.9673 + . ID=CGI_10011722; scaffold43664 GLEAN mRNA 270509 285315 0.613353 - . ID=CGI_10011723; scaffold43664 TRF Tandem_Repeat 272014 272344 334 + . . scaffold43664 TRF Tandem_Repeat 272056 272344 260 + . . scaffold43664 TRF Tandem_Repeat 284471 284511 82 + . . scaffold43664 GLEAN promoter 285316 286315 0.613353 - . ID=CGI_10011723; scaffold43664 GLEAN promoter 285502 286501 0.831074 + . ID=CGI_10011724; scaffold43664 GLEAN mRNA 286502 293223 0.831074 + . ID=CGI_10011724; scaffold43664 TRF Tandem_Repeat 290008 290081 103 + . . scaffold43664 TRF Tandem_Repeat 294087 294137 66 + . . scaffold43676 GLEAN mRNA 1340 3109 1 - . ID=CGI_10011725; scaffold43676 GLEAN promoter 3110 4109 1 - . ID=CGI_10011725; scaffold43676 TRF Tandem_Repeat 8246 8271 52 + . . scaffold43676 WUBlastX LINE_RTE-BovB 11843 12085 78 - . . scaffold43676 WUBlastX LINE_RTE-BovB 11924 12214 137 - . . scaffold43676 WUBlastX LINE_RTE-BovB 12118 12330 88 - . . scaffold43676 WUBlastX LINE_RTE-BovB 12118 12453 62 - . . scaffold43676 WUBlastX LINE_RTE-BovB 12666 12941 91 - . . scaffold43676 GLEAN promoter 13345 14344 0.734569 + . ID=CGI_10011726; scaffold43676 GLEAN mRNA 14345 22388 0.734569 + . ID=CGI_10011726; scaffold43676 TRF Tandem_Repeat 27393 27902 876 + . . scaffold43676 GLEAN mRNA 30284 33814 1 - . ID=CGI_10011727; scaffold43676 GLEAN promoter 33815 34814 1 - . ID=CGI_10011727; scaffold43676 GLEAN promoter 56354 57353 1 + . ID=CGI_10011728; scaffold43676 GLEAN mRNA 57354 58823 1 + . ID=CGI_10011728; scaffold43676 GLEAN mRNA 61551 77121 0.553897 - . ID=CGI_10011729; scaffold43676 TRF Tandem_Repeat 63327 63359 66 + . . scaffold43676 WUBlastX LINE_RTE-X 73259 73363 29 + . . scaffold43676 WUBlastX LINE_RTE-X 73375 73485 46 + . . scaffold43676 GLEAN promoter 77122 78121 0.553897 - . ID=CGI_10011729; scaffold43676 TRF Tandem_Repeat 77480 77561 164 + . . scaffold43676 GLEAN mRNA 79739 87676 0.999672 - . ID=CGI_10011730; scaffold43676 GLEAN promoter 87677 88676 0.999672 - . ID=CGI_10011730; scaffold43676 GLEAN promoter 98596 99595 0.726504 + . ID=CGI_10011731; scaffold43676 GLEAN mRNA 99596 152483 0.726504 + . ID=CGI_10011731; scaffold43676 TRF Tandem_Repeat 105295 105360 123 + . . scaffold43676 TRF Tandem_Repeat 106106 106785 638 + . . scaffold43676 TRF Tandem_Repeat 106106 106785 550 + . . scaffold43676 TRF Tandem_Repeat 106106 106785 606 + . . scaffold43676 TRF Tandem_Repeat 112651 112703 106 + . . scaffold43676 TRF Tandem_Repeat 127709 127756 96 + . . scaffold43676 TRF Tandem_Repeat 139013 139075 63 + . . scaffold43676 TRF Tandem_Repeat 141593 142655 1507 + . . scaffold43676 TRF Tandem_Repeat 146683 146726 70 + . . scaffold43676 TRF Tandem_Repeat 146753 148144 1996 + . . scaffold43676 TRF Tandem_Repeat 149480 150622 1594 + . . scaffold43676 GLEAN mRNA 158767 159138 1 - . ID=CGI_10011732; scaffold43676 GLEAN promoter 159139 160138 1 - . ID=CGI_10011732; scaffold43676 TRF Tandem_Repeat 165719 165886 221 + . . scaffold43676 WUBlastX LINE_L2 168080 168364 88 - . . scaffold43676 GLEAN mRNA 179061 181264 0.587965 - . ID=CGI_10011733; scaffold43676 GLEAN promoter 181265 182264 0.587965 - . ID=CGI_10011733; scaffold43676 TRF Tandem_Repeat 209107 209139 57 + . . scaffold43676 TRF Tandem_Repeat 209791 209846 112 + . . scaffold43676 WUBlastX LTR_Copia 209974 210588 92 + . . scaffold43676 WUBlastX LTR_Gypsy 210082 211263 296 + . . scaffold43676 WUBlastX LTR_Gypsy 210091 210927 372 + . . scaffold43676 GLEAN promoter 210597 211596 0.756935 + . ID=CGI_10011734; scaffold43676 WUBlastX RC_Helitron 211303 211839 32 + . . scaffold43676 GLEAN mRNA 211597 216385 0.756935 + . ID=CGI_10011734; scaffold43676 WUBlastX LINE_L2 214646 214963 68 + . . scaffold43676 WUBlastX LINE_RTE-X 214766 215275 73 + . . scaffold43676 TRF Tandem_Repeat 215547 216148 794 + . . scaffold43676 WUBlastX DNA_TcMar-Tc1 218732 219046 53 + . . scaffold43676 WUBlastX DNA_TcMar-Tc1 218780 219598 89 + . . scaffold43676 GLEAN promoter 218974 219973 0.979972 + . ID=CGI_10011735; scaffold43676 WUBlastX DNA_TcMar-Tc1 219234 219557 122 + . . scaffold43676 GLEAN mRNA 219974 226184 0.979972 + . ID=CGI_10011735; scaffold43676 TRF Tandem_Repeat 226291 226329 78 + . . scaffold43676 GLEAN mRNA 239394 252311 0.855112 - . ID=CGI_10011736; scaffold43676 GLEAN promoter 252312 253311 0.855112 - . ID=CGI_10011736; scaffold43676 TRF Tandem_Repeat 259037 259083 85 + . . scaffold43676 GLEAN promoter 267993 268992 0.997884 + . ID=CGI_10011738; scaffold43676 GLEAN mRNA 268993 270399 0.997884 + . ID=CGI_10011738; scaffold43676 GLEAN promoter 276519 277518 0.82683 + . ID=CGI_10011739; scaffold43676 GLEAN mRNA 277519 279033 0.82683 + . ID=CGI_10011739; scaffold43676 WUBlastX LINE_L2 279758 279877 35 + . . scaffold43676 WUBlastX LINE_L2 279928 280107 39 + . . scaffold43676 GLEAN mRNA 285170 286469 0.887804 - . ID=CGI_10011740; scaffold43676 TRF Tandem_Repeat 285545 285664 213 + . . scaffold43676 GLEAN promoter 286470 287469 0.887804 - . ID=CGI_10011740; scaffold43676 TRF Tandem_Repeat 294762 294874 226 + . . scaffold43680 TRF Tandem_Repeat 1002 1292 339 + . . scaffold43680 TRF Tandem_Repeat 1195 1333 116 + . . scaffold43680 WUBlastX DNA_IS 7234 8304 1703 + . . scaffold43680 WUBlastX DNA_IS 8282 8494 314 + . . scaffold43680 TRF Tandem_Repeat 8941 9049 73 + . . scaffold43680 GLEAN promoter 11241 12240 0.476017 + . ID=CGI_10011741; scaffold43680 GLEAN mRNA 12241 29107 0.476017 + . ID=CGI_10011741; scaffold43680 TRF Tandem_Repeat 14224 14312 115 + . . scaffold43680 GLEAN mRNA 31833 51722 0.733639 - . ID=CGI_10011742; scaffold43680 TRF Tandem_Repeat 35308 35522 403 + . . scaffold43680 GLEAN promoter 51723 52722 0.733639 - . ID=CGI_10011742; scaffold43680 GLEAN promoter 53753 54752 1 + . ID=CGI_10011743; scaffold43680 GLEAN mRNA 54753 61015 1 + . ID=CGI_10011743; scaffold43680 TRF Tandem_Repeat 56968 57674 1054 + . . scaffold43680 GLEAN mRNA 64498 67456 1 - . ID=CGI_10011744; scaffold43680 GLEAN promoter 67457 68456 1 - . ID=CGI_10011744; scaffold43680 TRF Tandem_Repeat 67834 67948 92 + . . scaffold43680 WUBlastX LINE_L2 69648 70787 674 - . . scaffold43680 WUBlastX LINE_L1 69981 70934 76 - . . scaffold43680 WUBlastX LINE_L2 71545 72390 327 - . . scaffold43680 TRF Tandem_Repeat 72411 72477 82 + . . scaffold43680 TRF Tandem_Repeat 83239 83289 66 + . . scaffold43680 GLEAN mRNA 85626 98095 1 - . ID=CGI_10011745; scaffold43680 TRF Tandem_Repeat 85722 86306 389 + . . scaffold43680 TRF Tandem_Repeat 85777 86310 487 + . . scaffold43680 TRF Tandem_Repeat 86005 86310 393 + . . scaffold43680 GLEAN promoter 98096 99095 1 - . ID=CGI_10011745; scaffold43680 TRF Tandem_Repeat 98467 98520 108 + . . scaffold43680 TRF Tandem_Repeat 104219 104271 106 + . . scaffold43680 TRF Tandem_Repeat 107203 107456 273 + . . scaffold43680 TRF Tandem_Repeat 107203 107456 237 + . . scaffold43680 TRF Tandem_Repeat 108263 108440 182 + . . scaffold43680 TRF Tandem_Repeat 108265 108440 246 + . . scaffold43680 GLEAN mRNA 111764 112579 0.449006 - . ID=CGI_10011746; scaffold43680 GLEAN promoter 112580 113579 0.449006 - . ID=CGI_10011746; scaffold43680 GLEAN mRNA 113130 137215 0.990718 - . ID=CGI_10011747; scaffold43680 GLEAN promoter 137216 138215 0.990718 - . ID=CGI_10011747; scaffold43680 TRF Tandem_Repeat 142598 144061 1466 + . . scaffold43680 TRF Tandem_Repeat 142598 144061 1321 + . . scaffold43680 TRF Tandem_Repeat 144782 145580 1433 + . . scaffold43680 TRF Tandem_Repeat 145589 145633 54 + . . scaffold43680 WUBlastX DNA_Harbinger 163214 163609 143 + . . scaffold43680 WUBlastX DNA_Harbinger 163602 163742 114 + . . scaffold43680 WUBlastX DNA_Harbinger 163602 163772 37 + . . scaffold43680 WUBlastX DNA_Harbinger 163873 164010 60 + . . scaffold43680 WUBlastX DNA_Harbinger 163979 164125 44 + . . scaffold43680 WUBlastX DNA_Harbinger 164189 164245 23 + . . scaffold43680 WUBlastX DNA_Harbinger 165099 165236 22 - . . scaffold43680 WUBlastX DNA_Harbinger 165466 165609 62 - . . scaffold43680 WUBlastX DNA_hAT-Tip100 173296 173976 66 - . . scaffold43680 WUBlastX DNA_hAT-Tip100 173323 173817 101 - . . scaffold43680 WUBlastX DNA_hAT-Tip100 173943 174215 155 - . . scaffold43680 WUBlastX DNA_hAT-Tip100 173997 174254 86 - . . scaffold43680 WUBlastX DNA_hAT-Tip100 174072 174287 61 - . . scaffold43680 WUBlastX DNA_hAT-Tip100 174223 174330 49 - . . scaffold43680 WUBlastX DNA_hAT-Tip100 174229 174372 47 - . . scaffold43680 WUBlastX DNA_hAT-Tip100 174359 174412 29 - . . scaffold43680 GLEAN mRNA 188068 202733 0.998595 - . ID=CGI_10011748; scaffold43680 TRF Tandem_Repeat 194317 194596 452 + . . scaffold43680 GLEAN promoter 202734 203733 0.998595 - . ID=CGI_10011748; scaffold43680 TRF Tandem_Repeat 216136 216175 80 + . . scaffold43680 GLEAN promoter 223954 224953 1 + . ID=CGI_10011749; scaffold43680 GLEAN mRNA 224954 234863 1 + . ID=CGI_10011749; scaffold43680 GLEAN mRNA 236308 251111 0.691038 - . ID=CGI_10011750; scaffold43680 TRF Tandem_Repeat 239192 239730 537 + . . scaffold43680 TRF Tandem_Repeat 239339 239676 233 + . . scaffold43680 TRF Tandem_Repeat 239381 239682 203 + . . scaffold43680 TRF Tandem_Repeat 239381 239730 226 + . . scaffold43680 TRF Tandem_Repeat 240713 240765 99 + . . scaffold43680 TRF Tandem_Repeat 249225 249250 52 + . . scaffold43680 GLEAN promoter 250811 251810 0.531523 + . ID=CGI_10011751; scaffold43680 GLEAN promoter 251112 252111 0.691038 - . ID=CGI_10011750; scaffold43680 GLEAN mRNA 251811 256628 0.531523 + . ID=CGI_10011751; scaffold43680 GLEAN promoter 258816 259815 0.999295 + . ID=CGI_10011752; scaffold43680 GLEAN mRNA 259816 287535 0.999295 + . ID=CGI_10011752; scaffold43680 TRF Tandem_Repeat 264694 264729 58 + . . scaffold43680 TRF Tandem_Repeat 268269 268331 126 + . . scaffold43680 TRF Tandem_Repeat 268434 268466 57 + . . scaffold43680 TRF Tandem_Repeat 276110 276163 63 + . . scaffold43680 TRF Tandem_Repeat 276116 276163 69 + . . scaffold43680 TRF Tandem_Repeat 280531 281477 1314 + . . scaffold43680 TRF Tandem_Repeat 298202 298271 70 + . . scaffold43686 WUBlastX LINE_L1-Tx1 2204 2515 40 - . . scaffold43686 WUBlastX LINE_L1-Tx1 3352 3624 56 - . . scaffold43686 WUBlastX LINE_L1 3388 3732 50 - . . scaffold43686 WUBlastX LINE_L1-Tx1 3397 3678 119 - . . scaffold43686 WUBlastX LINE_CR1-L2 8988 9098 29 - . . scaffold43686 WUBlastX LINE_CR1-L2 9110 9241 27 - . . scaffold43686 WUBlastX LINE_CR1-L2 9250 9291 36 - . . scaffold43686 WUBlastX DNA_Sola 10955 11125 42 - . . scaffold43686 WUBlastX DNA_Sola 11652 11819 52 - . . scaffold43686 GLEAN promoter 14165 15164 0.498897 + . ID=CGI_10011753; scaffold43686 GLEAN mRNA 15165 50110 0.498897 + . ID=CGI_10011753; scaffold43686 WUBlastX LINE_L1 15381 15428 21 - . . scaffold43686 WUBlastX LINE_CR1 15536 16489 742 - . . scaffold43686 WUBlastX LINE_CR1 16492 16926 437 - . . scaffold43686 WUBlastX LINE_CR1 16854 17657 372 - . . scaffold43686 WUBlastX LINE_CR1 17581 17829 121 - . . scaffold43686 WUBlastX LINE_CR1 17581 17952 56 - . . scaffold43686 WUBlastX LINE_CR1-L2 17593 17871 60 - . . scaffold43686 WUBlastX LINE_L1 24193 24480 119 - . . scaffold43686 TRF Tandem_Repeat 27305 27348 70 + . . scaffold43686 TRF Tandem_Repeat 27379 28172 1189 + . . scaffold43686 TRF Tandem_Repeat 29868 29989 64 + . . scaffold43686 TRF Tandem_Repeat 29889 30304 354 + . . scaffold43686 TRF Tandem_Repeat 29957 30304 444 + . . scaffold43686 TRF Tandem_Repeat 29958 30304 543 + . . scaffold43686 GLEAN mRNA 33874 35326 1 - . ID=CGI_10011754; scaffold43686 GLEAN promoter 35327 36326 1 - . ID=CGI_10011754; scaffold43686 GLEAN mRNA 50576 68311 0.584771 - . ID=CGI_10011755; scaffold43686 TRF Tandem_Repeat 60272 60304 50 + . . scaffold43686 TRF Tandem_Repeat 60304 60362 118 + . . scaffold43686 TRF Tandem_Repeat 63755 63796 66 + . . scaffold43686 GLEAN promoter 68312 69311 0.584771 - . ID=CGI_10011755; scaffold43686 WUBlastX LINE_L1-Tx1 76628 77224 39 - . . scaffold43686 WUBlastX LINE_L1 76730 77110 71 - . . scaffold43686 WUBlastX LINE_L1-Tx1 76739 77224 49 - . . scaffold43686 TRF Tandem_Repeat 79973 80043 133 + . . scaffold43686 WUBlastX LINE_L1-Tx1 83146 84114 506 + . . scaffold43686 WUBlastX LINE_L1-Tx1 84065 84715 229 + . . scaffold43686 WUBlastX LINE_L1 84344 85030 36 + . . scaffold43686 WUBlastX LINE_L1 85570 86025 93 + . . scaffold43686 WUBlastX LINE_L1-Tx1 85627 85995 101 + . . scaffold43686 TRF Tandem_Repeat 109773 109812 53 + . . scaffold43686 WUBlastX DNA_hAT-hATw 121231 121593 42 - . . scaffold43686 WUBlastX DNA_hAT-hATw 121563 122960 441 - . . scaffold43686 GLEAN promoter 131242 132241 0.710657 + . ID=CGI_10011756; scaffold43686 WUBlastX LTR_Gypsy-Cigr 131524 131595 32 + . . scaffold43686 WUBlastX LTR_Gypsy 131593 131973 98 + . . scaffold43686 GLEAN promoter 132170 133169 0.729099 + . ID=CGI_10011757; scaffold43686 GLEAN mRNA 132242 133096 0.710657 + . ID=CGI_10011756; scaffold43686 GLEAN mRNA 133170 134982 0.729099 + . ID=CGI_10011757; scaffold43686 WUBlastX LINE_L1-Tx1 142035 142265 64 + . . scaffold43686 WUBlastX LTR_Gypsy 147358 149031 230 - . . scaffold43686 WUBlastX LTR_Gypsy 147610 149730 346 - . . scaffold43686 WUBlastX LTR_Gypsy 147610 149010 398 - . . scaffold43686 WUBlastX LTR_Gypsy 149578 149781 30 - . . scaffold43686 WUBlastX LTR_Gypsy 150251 150724 29 - . . scaffold43686 WUBlastX DNA_NOF 151960 152085 63 - . . scaffold43686 WUBlastX LTR_Gypsy 168741 169067 58 - . . scaffold43686 WUBlastX LTR_ERV1 168870 169070 88 - . . scaffold43686 WUBlastX LTR_ERV1 168879 169130 71 - . . scaffold43686 GLEAN mRNA 172665 193661 0.978405 - . ID=CGI_10011758; scaffold43686 WUBlastX LINE_L2 174847 175296 21 - . . scaffold43686 WUBlastX LINE_L2 175018 175206 70 - . . scaffold43686 WUBlastX DNA_Zator 183554 183778 39 - . . scaffold43686 WUBlastX DNA_Zator 183928 184116 90 - . . scaffold43686 WUBlastX DNA_Zator 184098 185006 290 - . . scaffold43686 WUBlastX DNA_Zator 185000 185242 83 - . . scaffold43686 WUBlastX DNA_Zator 185236 185982 126 - . . scaffold43686 WUBlastX LTR_Gypsy 187073 187330 117 - . . scaffold43686 WUBlastX LTR_Gypsy 187115 187630 206 - . . scaffold43686 WUBlastX LTR_Gypsy 187636 187923 118 - . . scaffold43686 WUBlastX LTR_Gypsy 187639 188076 108 - . . scaffold43686 WUBlastX LTR_Gypsy 187639 188532 22 - . . scaffold43686 WUBlastX LTR_Gypsy 188362 188532 31 - . . scaffold43686 WUBlastX LTR_Gypsy 188392 188532 54 - . . scaffold43686 WUBlastX LTR_Gypsy 188594 188674 21 - . . scaffold43686 GLEAN promoter 193662 194661 0.978405 - . ID=CGI_10011758; scaffold43686 TRF Tandem_Repeat 200572 200601 51 + . . scaffold43686 TRF Tandem_Repeat 207674 207811 183 + . . scaffold43686 GLEAN mRNA 211081 243282 0.810912 - . ID=CGI_10011759; scaffold43686 TRF Tandem_Repeat 236505 236573 102 + . . scaffold43686 GLEAN promoter 243283 244282 0.810912 - . ID=CGI_10011759; scaffold43686 TRF Tandem_Repeat 253948 253979 64 + . . scaffold43686 TRF Tandem_Repeat 254838 254910 146 + . . scaffold43686 GLEAN mRNA 255297 268876 0.445462 - . ID=CGI_10011760; scaffold43686 TRF Tandem_Repeat 258901 258946 92 + . . scaffold43686 TRF Tandem_Repeat 259050 259094 90 + . . scaffold43686 GLEAN promoter 268877 269876 0.445462 - . ID=CGI_10011760; scaffold43686 TRF Tandem_Repeat 270402 270454 106 + . . scaffold43686 TRF Tandem_Repeat 272119 272209 116 + . . scaffold43686 GLEAN mRNA 273361 275364 1 - . ID=CGI_10011761; scaffold43686 GLEAN promoter 275365 276364 1 - . ID=CGI_10011761; scaffold43686 TRF Tandem_Repeat 292268 292342 150 + . . scaffold43692 TRF Tandem_Repeat 698 1702 1536 + . . scaffold43692 GLEAN mRNA 2001 19181 0.999572 - . ID=CGI_10011808; scaffold43692 TRF Tandem_Repeat 17051 17092 84 + . . scaffold43692 GLEAN promoter 19182 20181 0.999572 - . ID=CGI_10011808; scaffold43692 GLEAN mRNA 20600 33916 1 - . ID=CGI_10011809; scaffold43692 TRF Tandem_Repeat 30152 30194 86 + . . scaffold43692 TRF Tandem_Repeat 30890 31031 88 + . . scaffold43692 GLEAN promoter 33917 34916 1 - . ID=CGI_10011809; scaffold43692 GLEAN mRNA 43562 49985 1 - . ID=CGI_10011810; scaffold43692 TRF Tandem_Repeat 47185 47540 694 + . . scaffold43692 GLEAN promoter 49986 50985 1 - . ID=CGI_10011810; scaffold43692 GLEAN mRNA 52005 85047 0.869448 - . ID=CGI_10011811; scaffold43692 GLEAN promoter 62821 63820 0.614411 + . ID=CGI_10011812; scaffold43692 GLEAN mRNA 63821 78304 0.614411 + . ID=CGI_10011812; scaffold43692 GLEAN promoter 85048 86047 0.869448 - . ID=CGI_10011811; scaffold43692 TRF Tandem_Repeat 86036 86081 92 + . . scaffold43692 TRF Tandem_Repeat 86158 86190 66 + . . scaffold43692 TRF Tandem_Repeat 86653 86692 80 + . . scaffold43692 WUBlastX LINE_CR1-L2 87658 87897 53 + . . scaffold43692 TRF Tandem_Repeat 91097 91182 73 + . . scaffold43692 TRF Tandem_Repeat 91116 91184 138 + . . scaffold43692 GLEAN mRNA 93418 99668 0.836238 - . ID=CGI_10011813; scaffold43692 GLEAN promoter 99669 100668 0.836238 - . ID=CGI_10011813; scaffold43692 TRF Tandem_Repeat 105022 105057 54 + . . scaffold43692 GLEAN promoter 109727 110726 1 + . ID=CGI_10011814; scaffold43692 GLEAN mRNA 110727 111086 1 + . ID=CGI_10011814; scaffold43692 GLEAN mRNA 114243 115937 0.593389 - . ID=CGI_10011815; scaffold43692 GLEAN promoter 115938 116937 0.593389 - . ID=CGI_10011815; scaffold43692 GLEAN promoter 118503 119502 0.920076 + . ID=CGI_10011816; scaffold43692 GLEAN mRNA 119503 131075 0.920076 + . ID=CGI_10011816; scaffold43692 WUBlastX LINE_CR1 133524 133583 25 + . . scaffold43692 WUBlastX LINE_CR1 134315 134398 23 + . . scaffold43692 WUBlastX LINE_CR1 134345 134422 23 + . . scaffold43692 WUBlastX LINE_CR1 134348 134392 25 + . . scaffold43692 WUBlastX LINE_CR1 134605 134871 63 + . . scaffold43692 TRF Tandem_Repeat 141051 141117 80 + . . scaffold43692 WUBlastX DNA_TcMar-Marin 150051 150389 130 + . . scaffold43692 TRF Tandem_Repeat 173641 173670 60 + . . scaffold43692 TRF Tandem_Repeat 175659 175690 55 + . . scaffold43692 GLEAN mRNA 181430 182872 1 - . ID=CGI_10011817; scaffold43692 WUBlastX LINE_L1 182054 182746 44 - . . scaffold43692 GLEAN promoter 182873 183872 1 - . ID=CGI_10011817; scaffold43692 GLEAN promoter 202287 203286 0.955032 + . ID=CGI_10011818; scaffold43692 GLEAN mRNA 203287 216153 0.955032 + . ID=CGI_10011818; scaffold43692 TRF Tandem_Repeat 209077 209120 63 + . . scaffold43692 TRF Tandem_Repeat 211444 211482 78 + . . scaffold43692 TRF Tandem_Repeat 211600 211659 111 + . . scaffold43692 GLEAN mRNA 220030 222975 0.999661 - . ID=CGI_10011819; scaffold43692 GLEAN promoter 222976 223975 0.999661 - . ID=CGI_10011819; scaffold43692 GLEAN promoter 224344 225343 0.990978 + . ID=CGI_10011820; scaffold43692 GLEAN mRNA 225344 238853 0.990978 + . ID=CGI_10011820; scaffold43692 GLEAN promoter 260472 261471 1 + . ID=CGI_10011821; scaffold43692 GLEAN mRNA 261472 264365 1 + . ID=CGI_10011821; scaffold43692 GLEAN mRNA 265028 266506 0.929601 - . ID=CGI_10011822; scaffold43692 GLEAN promoter 266276 267275 0.648527 + . ID=CGI_10011823; scaffold43692 GLEAN promoter 266507 267506 0.929601 - . ID=CGI_10011822; scaffold43692 GLEAN mRNA 267276 271075 0.648527 + . ID=CGI_10011823; scaffold43692 TRF Tandem_Repeat 267535 267578 88 + . . scaffold43692 TRF Tandem_Repeat 267615 267655 82 + . . scaffold43692 GLEAN mRNA 277982 283141 0.922767 - . ID=CGI_10011824; scaffold43692 GLEAN promoter 283142 284141 0.922767 - . ID=CGI_10011824; scaffold43692 GLEAN mRNA 284177 291872 0.998382 - . ID=CGI_10011825; scaffold43692 TRF Tandem_Repeat 285652 285691 80 + . . scaffold43692 GLEAN promoter 291873 292872 0.998382 - . ID=CGI_10011825; scaffold43692 GLEAN mRNA 292241 299826 0.999998 - . ID=CGI_10011826; scaffold43692 GLEAN promoter 299827 300826 0.999998 - . ID=CGI_10011826; scaffold43696 GLEAN promoter 1631 2630 0.0834374 + . ID=CGI_10011797; scaffold43696 WUBlastX LTR_Gypsy 1908 2579 27 + . . scaffold43696 GLEAN mRNA 2631 16978 0.0834374 + . ID=CGI_10011797; scaffold43696 WUBlastX LTR_DIRS 2874 3752 629 + . . scaffold43696 WUBlastX LTR_Gypsy 3099 3911 134 + . . scaffold43696 GLEAN mRNA 8946 12205 0.999999 - . ID=CGI_10011798; scaffold43696 GLEAN promoter 12206 13205 0.999999 - . ID=CGI_10011798; scaffold43696 WUBlastX DNA_Harbinger 24054 24236 135 - . . scaffold43696 WUBlastX DNA_Harbinger 24202 24279 37 - . . scaffold43696 WUBlastX DNA_Harbinger 24285 24497 72 - . . scaffold43696 TRF Tandem_Repeat 30170 30201 64 + . . scaffold43696 TRF Tandem_Repeat 31517 31564 96 + . . scaffold43696 TRF Tandem_Repeat 32074 32220 150 + . . scaffold43696 GLEAN promoter 36332 37331 0.69515 + . ID=CGI_10011799; scaffold43696 GLEAN mRNA 37332 51830 0.69515 + . ID=CGI_10011799; scaffold43696 TRF Tandem_Repeat 42020 42087 118 + . . scaffold43696 GLEAN mRNA 54300 61779 1 - . ID=CGI_10011800; scaffold43696 TRF Tandem_Repeat 58226 58779 929 + . . scaffold43696 GLEAN promoter 61780 62779 1 - . ID=CGI_10011800; scaffold43696 GLEAN mRNA 66159 74428 0.99996 - . ID=CGI_10011801; scaffold43696 TRF Tandem_Repeat 67760 68261 731 + . . scaffold43696 TRF Tandem_Repeat 73754 73784 53 + . . scaffold43696 GLEAN promoter 74429 75428 0.99996 - . ID=CGI_10011801; scaffold43696 TRF Tandem_Repeat 76944 77014 135 + . . scaffold43696 TRF Tandem_Repeat 80232 80303 58 + . . scaffold43696 TRF Tandem_Repeat 80233 80310 90 + . . scaffold43696 TRF Tandem_Repeat 80266 80312 51 + . . scaffold43696 TRF Tandem_Repeat 89091 89134 88 + . . scaffold43696 WUBlastX LINE_L1-Tx1 93056 93871 79 - . . scaffold43696 WUBlastX LINE_L1-Tx1 93086 93580 99 - . . scaffold43696 GLEAN mRNA 101319 108605 0.904546 - . ID=CGI_10011802; scaffold43696 TRF Tandem_Repeat 104929 104960 64 + . . scaffold43696 TRF Tandem_Repeat 106536 106566 62 + . . scaffold43696 GLEAN promoter 108606 109605 0.904546 - . ID=CGI_10011802; scaffold43696 TRF Tandem_Repeat 112810 112847 76 + . . scaffold43696 TRF Tandem_Repeat 113053 113137 161 + . . scaffold43696 TRF Tandem_Repeat 113905 113948 88 + . . scaffold43696 WUBlastX LINE_L2 118545 119390 373 - . . scaffold43696 TRF Tandem_Repeat 120415 120524 109 + . . scaffold43696 TRF Tandem_Repeat 120605 120703 74 + . . scaffold43696 GLEAN promoter 128088 129087 0.999846 + . ID=CGI_10011803; scaffold43696 GLEAN mRNA 129088 133892 0.999846 + . ID=CGI_10011803; scaffold43696 TRF Tandem_Repeat 133008 133052 90 + . . scaffold43696 TRF Tandem_Repeat 137700 137734 70 + . . scaffold43696 TRF Tandem_Repeat 152051 152189 156 + . . scaffold43696 TRF Tandem_Repeat 152241 152361 93 + . . scaffold43696 TRF Tandem_Repeat 152458 152572 151 + . . scaffold43696 TRF Tandem_Repeat 155852 155945 188 + . . scaffold43696 TRF Tandem_Repeat 156795 156830 72 + . . scaffold43696 TRF Tandem_Repeat 182660 182808 128 + . . scaffold43696 TRF Tandem_Repeat 184409 184457 98 + . . scaffold43696 GLEAN promoter 185841 186840 0.990976 + . ID=CGI_10011804; scaffold43696 GLEAN mRNA 186841 193400 0.990976 + . ID=CGI_10011804; scaffold43696 TRF Tandem_Repeat 189624 189661 76 + . . scaffold43696 TRF Tandem_Repeat 199850 199944 75 + . . scaffold43696 GLEAN promoter 199896 200895 0.287333 + . ID=CGI_10011805; scaffold43696 GLEAN mRNA 200896 208237 0.287333 + . ID=CGI_10011805; scaffold43696 WUBlastX LTR_Gypsy 202604 203065 38 + . . scaffold43696 WUBlastX LTR_Gypsy 202671 202766 44 + . . scaffold43696 WUBlastX LTR_Gypsy 202859 203065 63 + . . scaffold43696 TRF Tandem_Repeat 206057 206084 56 + . . scaffold43696 TRF Tandem_Repeat 234660 234707 69 + . . scaffold43696 TRF Tandem_Repeat 246765 246815 102 + . . scaffold43696 GLEAN promoter 258940 259939 0.843512 + . ID=CGI_10011806; scaffold43696 GLEAN mRNA 259940 277072 0.843512 + . ID=CGI_10011806; scaffold43696 TRF Tandem_Repeat 277915 278190 339 + . . scaffold43696 TRF Tandem_Repeat 277915 278193 334 + . . scaffold43696 TRF Tandem_Repeat 278462 278658 259 + . . scaffold43696 GLEAN mRNA 289854 290873 0.533142 - . ID=CGI_10011807; scaffold43696 GLEAN promoter 290874 291873 0.533142 - . ID=CGI_10011807; scaffold43696 TRF Tandem_Repeat 292246 292354 121 + . . scaffold43696 TRF Tandem_Repeat 292434 292490 60 + . . scaffold43696 WUBlastX LINE_RTE-X 297109 297633 52 + . . scaffold43696 WUBlastX LINE_CR1 300074 300472 48 + . . scaffold43696 WUBlastX LINE_I 300164 300487 129 + . . scaffold43696 WUBlastX LINE_RTE-X 300221 300523 193 + . . scaffold43696 WUBlastX LINE_RTE-X 300221 300652 138 + . . scaffold43696 WUBlastX LINE_RTE-X 300609 300749 56 + . . scaffold43696 WUBlastX LINE_RTE-X 300627 300791 35 + . . scaffold43696 WUBlastX LINE_RTE-X 301295 301453 49 + . . scaffold43696 WUBlastX LINE_RTE-X 301319 301453 71 + . . scaffold43702 TRF Tandem_Repeat 505 553 53 + . . scaffold43702 TRF Tandem_Repeat 515 553 51 + . . scaffold43702 TRF Tandem_Repeat 1040 1183 125 + . . scaffold43702 WUBlastX LINE_CR1 2675 3022 23 - . . scaffold43702 WUBlastX LINE_RTE-X 2747 3040 59 - . . scaffold43702 WUBlastX LINE_RTE-X 2804 3112 40 - . . scaffold43702 WUBlastX LINE_Proto2 3186 3617 38 - . . scaffold43702 WUBlastX LINE_CR1-L2 3252 3377 49 - . . scaffold43702 WUBlastX LINE_I 3255 3329 49 - . . scaffold43702 WUBlastX LINE_L2 3267 3554 39 - . . scaffold43702 GLEAN promoter 7720 8719 0.998449 + . ID=CGI_10011897; scaffold43702 GLEAN mRNA 8720 20816 0.998449 + . ID=CGI_10011897; scaffold43702 GLEAN mRNA 10417 12018 1 - . ID=CGI_10011898; scaffold43702 WUBlastX DNA_hAT 10612 12066 475 - . . scaffold43702 GLEAN promoter 12019 13018 1 - . ID=CGI_10011898; scaffold43702 GLEAN promoter 31960 32959 0.852547 + . ID=CGI_10011899; scaffold43702 GLEAN mRNA 32960 47310 0.852547 + . ID=CGI_10011899; scaffold43702 TRF Tandem_Repeat 35942 36098 221 + . . scaffold43702 GLEAN mRNA 54888 56999 1 - . ID=CGI_10011900; scaffold43702 GLEAN promoter 57000 57999 1 - . ID=CGI_10011900; scaffold43702 GLEAN promoter 58053 59052 0.577691 + . ID=CGI_10011901; scaffold43702 GLEAN mRNA 59053 62880 0.577691 + . ID=CGI_10011901; scaffold43702 TRF Tandem_Repeat 61755 61793 78 + . . scaffold43702 TRF Tandem_Repeat 62504 62550 94 + . . scaffold43702 GLEAN promoter 65490 66489 0.986825 + . ID=CGI_10011902; scaffold43702 GLEAN mRNA 66490 69111 0.986825 + . ID=CGI_10011902; scaffold43702 GLEAN mRNA 66519 92177 0.245591 - . ID=CGI_10011903; scaffold43702 WUBlastX LINE_RTE-BovB 75611 75799 138 + . . scaffold43702 WUBlastX LINE_RTE-BovB 75655 76242 211 + . . scaffold43702 WUBlastX LINE_RTE-BovB 75811 76236 355 + . . scaffold43702 TRF Tandem_Repeat 78279 78328 57 + . . scaffold43702 WUBlastX LINE_RTE-X 80217 80966 168 - . . scaffold43702 TRF Tandem_Repeat 90369 90408 71 + . . scaffold43702 GLEAN promoter 92178 93177 0.245591 - . ID=CGI_10011903; scaffold43702 GLEAN promoter 100702 101701 0.999998 + . ID=CGI_10011904; scaffold43702 GLEAN mRNA 101702 117816 0.999998 + . ID=CGI_10011904; scaffold43702 GLEAN mRNA 121413 125348 1 - . ID=CGI_10011905; scaffold43702 TRF Tandem_Repeat 121532 121576 83 + . . scaffold43702 GLEAN promoter 124456 125455 0.999675 + . ID=CGI_10011906; scaffold43702 GLEAN promoter 125349 126348 1 - . ID=CGI_10011905; scaffold43702 GLEAN mRNA 125456 132351 0.999675 + . ID=CGI_10011906; scaffold43702 TRF Tandem_Repeat 128408 128718 595 + . . scaffold43702 TRF Tandem_Repeat 134058 134102 83 + . . scaffold43702 TRF Tandem_Repeat 143984 144353 421 + . . scaffold43702 GLEAN mRNA 144337 144869 0.248322 - . ID=CGI_10011907; scaffold43702 GLEAN promoter 144870 145869 0.248322 - . ID=CGI_10011907; scaffold43702 TRF Tandem_Repeat 148163 148224 124 + . . scaffold43702 TRF Tandem_Repeat 160002 160052 84 + . . scaffold43702 GLEAN promoter 161007 162006 0.998504 + . ID=CGI_10011908; scaffold43702 GLEAN mRNA 162007 162789 0.998504 + . ID=CGI_10011908; scaffold43702 TRF Tandem_Repeat 165232 165277 92 + . . scaffold43702 TRF Tandem_Repeat 167372 167448 138 + . . scaffold43702 GLEAN promoter 167400 168399 0.931892 + . ID=CGI_10011909; scaffold43702 GLEAN mRNA 168400 169775 0.931892 + . ID=CGI_10011909; scaffold43702 GLEAN promoter 178527 179526 0.999933 + . ID=CGI_10011910; scaffold43702 GLEAN mRNA 179527 180483 0.999933 + . ID=CGI_10011910; scaffold43702 GLEAN mRNA 180692 193700 0.990375 - . ID=CGI_10011911; scaffold43702 TRF Tandem_Repeat 184569 184637 131 + . . scaffold43702 TRF Tandem_Repeat 191939 191975 74 + . . scaffold43702 GLEAN promoter 193701 194700 0.990375 - . ID=CGI_10011911; scaffold43702 TRF Tandem_Repeat 193788 193948 68 + . . scaffold43702 TRF Tandem_Repeat 193857 193988 99 + . . scaffold43702 GLEAN mRNA 197338 200147 0.999903 - . ID=CGI_10011912; scaffold43702 GLEAN promoter 200148 201147 0.999903 - . ID=CGI_10011912; scaffold43702 WUBlastX LINE_RTE-X 207392 207928 115 + . . scaffold43702 WUBlastX LINE_RTE-X 207479 207967 248 + . . scaffold43702 GLEAN mRNA 210121 213690 0.996496 - . ID=CGI_10011913; scaffold43702 GLEAN promoter 213691 214690 0.996496 - . ID=CGI_10011913; scaffold43702 GLEAN promoter 214134 215133 0.618241 + . ID=CGI_10011914; scaffold43702 WUBlastX LINE_L1 215086 215208 50 + . . scaffold43702 GLEAN mRNA 215134 215346 0.618241 + . ID=CGI_10011914; scaffold43702 GLEAN mRNA 215243 218046 1 - . ID=CGI_10011915; scaffold43702 WUBlastX LINE_CR1 215269 215895 63 + . . scaffold43702 WUBlastX LINE_RTE-X 215374 217032 242 + . . scaffold43702 GLEAN promoter 218047 219046 1 - . ID=CGI_10011915; scaffold43702 TRF Tandem_Repeat 222478 222548 133 + . . scaffold43702 WUBlastX LINE_L2 223195 223326 27 + . . scaffold43702 TRF Tandem_Repeat 225794 226131 482 + . . scaffold43702 TRF Tandem_Repeat 225794 226129 384 + . . scaffold43702 TRF Tandem_Repeat 226941 226989 98 + . . scaffold43702 GLEAN mRNA 231268 234872 0.932143 - . ID=CGI_10011916; scaffold43702 GLEAN promoter 234873 235872 0.932143 - . ID=CGI_10011916; scaffold43702 TRF Tandem_Repeat 235912 236004 186 + . . scaffold43702 WUBlastX LTR_Gypsy 239174 239710 179 - . . scaffold43702 WUBlastX LTR_Gypsy-Cigr 239297 240532 867 - . . scaffold43702 WUBlastX LTR_Gypsy 239996 240652 203 - . . scaffold43702 WUBlastX LTR_Gypsy 240473 240748 32 - . . scaffold43702 TRF Tandem_Repeat 242946 243013 73 + . . scaffold43702 TRF Tandem_Repeat 254382 254436 110 + . . scaffold43702 TRF Tandem_Repeat 257679 257730 104 + . . scaffold43702 TRF Tandem_Repeat 269994 270018 50 + . . scaffold43702 WUBlastX DNA_TcMar-Tc1 272221 273030 215 - . . scaffold43702 TRF Tandem_Repeat 273129 273187 109 + . . scaffold43702 WUBlastX LINE_L1 276042 276452 21 + . . scaffold43702 WUBlastX LINE_RTE-RTE 276114 276443 44 + . . scaffold43702 WUBlastX LINE_RTE-X 276165 277883 497 + . . scaffold43702 TRF Tandem_Repeat 287531 287625 77 + . . scaffold43702 TRF Tandem_Repeat 289076 289115 71 + . . scaffold43702 TRF Tandem_Repeat 289164 289206 86 + . . scaffold43702 WUBlastX DNA_Harbinger 294379 294489 22 - . . scaffold43702 WUBlastX DNA_Harbinger 294602 294868 132 - . . scaffold43702 WUBlastX DNA_Harbinger 294677 294880 135 - . . scaffold43702 WUBlastX DNA_Harbinger 295339 295476 46 - . . scaffold43702 WUBlastX DNA_Harbinger 295342 295551 32 - . . scaffold43708 GLEAN mRNA 225 22019 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 3177 3210 59 + . . scaffold43708 TRF Tandem_Repeat 3549 3853 477 + . . scaffold43708 TRF Tandem_Repeat 3955 4097 123 + . . scaffold43708 TRF Tandem_Repeat 15038 15089 50 + . . scaffold43708 TRF Tandem_Repeat 17379 17646 513 + . . scaffold43708 TRF Tandem_Repeat 18110 18434 374 + . . scaffold43708 TRF Tandem_Repeat 18119 18434 433 + . . scaffold43708 TRF Tandem_Repeat 19321 19391 79 + . . scaffold43708 TRF Tandem_Repeat 21244 21889 977 + . . scaffold43708 TRF Tandem_Repeat 21637 21732 51 + . . scaffold43708 GLEAN promoter 22020 23019 0.959931 - . ID=CGI_10011964; scaffold43708 TRF Tandem_Repeat 22304 22481 221 + . . scaffold43708 TRF Tandem_Repeat 23093 23333 430 + . . scaffold43708 GLEAN mRNA 27860 50817 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 30010 30107 70 + . . scaffold43708 TRF Tandem_Repeat 30061 30107 67 + . . scaffold43708 TRF Tandem_Repeat 32389 32455 84 + . . scaffold43708 TRF Tandem_Repeat 36555 36611 96 + . . scaffold43708 TRF Tandem_Repeat 37279 37317 78 + . . scaffold43708 TRF Tandem_Repeat 37715 37753 78 + . . scaffold43708 TRF Tandem_Repeat 39327 39372 83 + . . scaffold43708 TRF Tandem_Repeat 41782 41823 84 + . . scaffold43708 TRF Tandem_Repeat 41868 41912 90 + . . scaffold43708 TRF Tandem_Repeat 41951 41982 64 + . . scaffold43708 TRF Tandem_Repeat 43477 43509 59 + . . scaffold43708 TRF Tandem_Repeat 43631 43701 142 + . . scaffold43708 TRF Tandem_Repeat 46793 46908 214 + . . scaffold43708 TRF Tandem_Repeat 47310 47343 68 + . . scaffold43708 TRF Tandem_Repeat 47358 47393 63 + . . scaffold43708 TRF Tandem_Repeat 48422 48468 94 + . . scaffold43708 TRF Tandem_Repeat 48866 48914 98 + . . scaffold43708 GLEAN promoter 50818 51817 0.980975 - . ID=CGI_10011965; scaffold43708 TRF Tandem_Repeat 57016 57060 90 + . . scaffold43708 WUBlastX LTR_Gypsy 60641 60829 40 - . . scaffold43708 WUBlastX LTR_ERV1 60713 60832 51 - . . scaffold43708 WUBlastX LTR_Gypsy 60849 61178 39 - . . scaffold43708 WUBlastX LTR_Gypsy 61284 61529 56 - . . scaffold43708 WUBlastX LTR_Gypsy 61389 61505 63 - . . scaffold43708 GLEAN mRNA 65504 67995 0.999405 - . ID=CGI_10011966; scaffold43708 GLEAN promoter 67996 68995 0.999405 - . ID=CGI_10011966; scaffold43708 TRF Tandem_Repeat 68409 68434 52 + . . scaffold43708 TRF Tandem_Repeat 69739 69813 141 + . . scaffold43708 GLEAN promoter 70613 71612 0.999995 + . ID=CGI_10011967; scaffold43708 TRF Tandem_Repeat 70710 70770 88 + . . scaffold43708 GLEAN mRNA 71613 92556 0.999995 + . ID=CGI_10011967; scaffold43708 TRF Tandem_Repeat 71780 71973 281 + . . scaffold43708 TRF Tandem_Repeat 72126 72237 170 + . . scaffold43708 WUBlastX DNA_Sola 75801 76199 103 + . . scaffold43708 TRF Tandem_Repeat 80824 81011 324 + . . scaffold43708 WUBlastX DNA_Sola 81460 82308 318 + . . scaffold43708 GLEAN promoter 94221 95220 0.924358 + . ID=CGI_10011968; scaffold43708 GLEAN mRNA 95221 107277 0.924358 + . ID=CGI_10011968; scaffold43708 GLEAN promoter 110568 111567 0.557908 + . ID=CGI_10011969; scaffold43708 GLEAN mRNA 111568 122762 0.557908 + . ID=CGI_10011969; scaffold43708 GLEAN promoter 128367 129366 0.948572 + . ID=CGI_10011970; scaffold43708 WUBlastX DNA_Crypton 128802 128945 52 + . . scaffold43708 GLEAN mRNA 129367 163757 0.948572 + . ID=CGI_10011970; scaffold43708 WUBlastX LINE_RTE-X 130729 132540 932 - . . scaffold43708 WUBlastX LINE_CR1 131971 132642 170 - . . scaffold43708 WUBlastX LINE_CR1 132737 132805 20 - . . scaffold43708 TRF Tandem_Repeat 133162 133186 50 + . . scaffold43708 TRF Tandem_Repeat 133186 133248 112 + . . scaffold43708 TRF Tandem_Repeat 160105 160159 110 + . . scaffold43708 TRF Tandem_Repeat 160314 160367 108 + . . scaffold43708 TRF Tandem_Repeat 165701 165786 70 + . . scaffold43708 TRF Tandem_Repeat 168146 168170 50 + . . scaffold43708 GLEAN promoter 171851 172850 0.544852 + . ID=CGI_10011971; scaffold43708 GLEAN mRNA 172851 177762 0.544852 + . ID=CGI_10011971; scaffold43708 GLEAN promoter 176890 177889 0.999676 + . ID=CGI_10011972; scaffold43708 GLEAN mRNA 177890 187626 0.999676 + . ID=CGI_10011972; scaffold43708 GLEAN promoter 188233 189232 0.999351 + . ID=CGI_10011973; scaffold43708 GLEAN mRNA 189233 196225 0.999351 + . ID=CGI_10011973; scaffold43708 TRF Tandem_Repeat 192006 192043 58 + . . scaffold43708 TRF Tandem_Repeat 200667 200700 68 + . . scaffold43708 WUBlastX LINE_CR1-L2 203336 203776 41 + . . scaffold43708 TRF Tandem_Repeat 206135 206194 120 + . . scaffold43708 TRF Tandem_Repeat 206387 206450 128 + . . scaffold43708 TRF Tandem_Repeat 212003 212039 74 + . . scaffold43708 TRF Tandem_Repeat 212364 212410 94 + . . scaffold43708 TRF Tandem_Repeat 219052 219106 110 + . . scaffold43708 GLEAN promoter 222509 223508 0.998643 + . ID=CGI_10011974; scaffold43708 GLEAN mRNA 223509 253864 0.998643 + . ID=CGI_10011974; scaffold43708 TRF Tandem_Repeat 233379 233420 84 + . . scaffold43708 WUBlastX LINE_CR1-L2 236971 237036 23 - . . scaffold43708 WUBlastX LINE_CR1-L2 237017 237760 293 - . . scaffold43708 WUBlastX LINE_L2 237762 238427 293 - . . scaffold43708 WUBlastX LINE_L2 238080 238511 201 - . . scaffold43708 WUBlastX LINE_CR1 238086 238598 143 - . . scaffold43708 WUBlastX LINE_L2 239241 239300 21 - . . scaffold43708 TRF Tandem_Repeat 240106 240150 90 + . . scaffold43708 GLEAN mRNA 241823 242182 0.999994 - . ID=CGI_10011975; scaffold43708 GLEAN promoter 242183 243182 0.999994 - . ID=CGI_10011975; scaffold43708 GLEAN promoter 252967 253966 1 + . ID=CGI_10011976; scaffold43708 GLEAN mRNA 253967 276545 1 + . ID=CGI_10011976; scaffold43708 TRF Tandem_Repeat 271914 271960 94 + . . scaffold43708 GLEAN mRNA 280529 281099 1 - . ID=CGI_10011977; scaffold43708 GLEAN promoter 281100 282099 1 - . ID=CGI_10011977; scaffold43708 GLEAN mRNA 282995 288788 0.999757 - . ID=CGI_10011978; scaffold43708 GLEAN promoter 288174 289173 0.841405 + . ID=CGI_10011979; scaffold43708 GLEAN promoter 288789 289788 0.999757 - . ID=CGI_10011978; scaffold43708 GLEAN mRNA 289174 301242 0.841405 + . ID=CGI_10011979; scaffold43708 GLEAN promoter 305168 306167 1 + . ID=CGI_10011980; scaffold43708 GLEAN mRNA 306168 306638 1 + . ID=CGI_10011980; scaffold43726 WUBlastX DNA_Crypton 3600 3659 32 + . . scaffold43726 WUBlastX DNA_Crypton 3781 4446 77 + . . scaffold43726 WUBlastX DNA_Crypton 3871 4269 97 + . . scaffold43726 TRF Tandem_Repeat 7053 7106 90 + . . scaffold43726 TRF Tandem_Repeat 32895 32925 62 + . . scaffold43726 TRF Tandem_Repeat 42388 42428 59 + . . scaffold43726 TRF Tandem_Repeat 42659 43432 835 + . . scaffold43726 TRF Tandem_Repeat 51310 51352 86 + . . scaffold43726 WUBlastX LINE_L2 51460 51555 28 - . . scaffold43726 WUBlastX LINE_CR1 51481 51633 85 - . . scaffold43726 WUBlastX LINE_CR1 51643 52482 556 - . . scaffold43726 WUBlastX LINE_CR1 51652 52650 385 - . . scaffold43726 WUBlastX LINE_L2 51910 52836 50 - . . scaffold43726 GLEAN promoter 53641 54640 0.55038 + . ID=CGI_10012020; scaffold43726 GLEAN mRNA 54641 60524 0.55038 + . ID=CGI_10012020; scaffold43726 TRF Tandem_Repeat 58964 60621 2107 + . . scaffold43726 GLEAN mRNA 64578 64796 0.978042 - . ID=CGI_10012021; scaffold43726 GLEAN promoter 64797 65796 0.978042 - . ID=CGI_10012021; scaffold43726 WUBlastX DNA_IS4EU 70517 70669 63 + . . scaffold43726 WUBlastX DNA_IS4EU 70671 70808 55 + . . scaffold43726 WUBlastX DNA_IS4EU 73200 73739 47 - . . scaffold43726 WUBlastX DNA_Kolobok-IS4 73233 73349 60 - . . scaffold43726 GLEAN mRNA 105852 107160 0.558395 - . ID=CGI_10012022; scaffold43726 GLEAN promoter 107161 108160 0.558395 - . ID=CGI_10012022; scaffold43726 TRF Tandem_Repeat 110078 110134 114 + . . scaffold43726 TRF Tandem_Repeat 110714 110772 109 + . . scaffold43726 TRF Tandem_Repeat 111189 111247 118 + . . scaffold43726 TRF Tandem_Repeat 127030 127071 84 + . . scaffold43726 TRF Tandem_Repeat 128086 128118 57 + . . scaffold43726 TRF Tandem_Repeat 132881 132943 126 + . . scaffold43726 TRF Tandem_Repeat 135101 135823 951 + . . scaffold43726 TRF Tandem_Repeat 136566 136936 481 + . . scaffold43726 TRF Tandem_Repeat 137259 137664 275 + . . scaffold43726 TRF Tandem_Repeat 137259 137664 313 + . . scaffold43726 TRF Tandem_Repeat 137736 138123 194 + . . scaffold43726 WUBlastX DNA_TcMar-Tc1 139121 139360 48 - . . scaffold43726 WUBlastX DNA_TcMar-Tc1 139178 139429 60 - . . scaffold43726 WUBlastX DNA_TcMar-Tc1 139360 139677 60 - . . scaffold43726 TRF Tandem_Repeat 140717 141019 527 + . . scaffold43726 TRF Tandem_Repeat 144781 144822 84 + . . scaffold43726 GLEAN mRNA 145496 185415 0.997652 - . ID=CGI_10012023; scaffold43726 TRF Tandem_Repeat 151586 151635 100 + . . scaffold43726 TRF Tandem_Repeat 155990 156022 66 + . . scaffold43726 WUBlastX LINE_RTE-X 157303 157434 70 + . . scaffold43726 WUBlastX LINE_RTE-X 160480 160785 90 - . . scaffold43726 WUBlastX LINE_RTE-X 160567 160752 93 - . . scaffold43726 TRF Tandem_Repeat 161640 161832 260 + . . scaffold43726 GLEAN promoter 171194 172193 0.999913 + . ID=CGI_10012024; scaffold43726 GLEAN mRNA 172194 185895 0.999913 + . ID=CGI_10012024; scaffold43726 GLEAN promoter 185416 186415 0.997652 - . ID=CGI_10012023; scaffold43726 WUBlastX LINE_RTE-X 187563 188099 134 + . . scaffold43726 WUBlastX LINE_RTE-X 187722 188099 199 + . . scaffold43726 WUBlastX LINE_RTE-X 188111 188245 67 + . . scaffold43726 WUBlastX LINE_RTE-X 188117 188272 66 + . . scaffold43726 WUBlastX LINE_RTE-X 188117 188302 58 + . . scaffold43726 WUBlastX LINE_RTE-X 188299 188439 55 + . . scaffold43726 WUBlastX LINE_RTE-X 188308 188481 27 + . . scaffold43726 WUBlastX LINE_RTE-X 188790 188942 20 + . . scaffold43726 WUBlastX LINE_RTE-X 188874 188942 25 + . . scaffold43726 GLEAN mRNA 189584 195489 0.999572 - . ID=CGI_10012025; scaffold43726 WUBlastX LINE_RTE-BovB 191235 192074 196 + . . scaffold43726 WUBlastX LINE_RTE-X 191418 192074 429 + . . scaffold43726 TRF Tandem_Repeat 192881 193026 109 + . . scaffold43726 WUBlastX LINE_RTE-X 193091 193216 46 + . . scaffold43726 WUBlastX LINE_RTE-X 193127 193339 38 + . . scaffold43726 GLEAN promoter 195490 196489 0.999572 - . ID=CGI_10012025; scaffold43726 TRF Tandem_Repeat 195940 195984 90 + . . scaffold43726 TRF Tandem_Repeat 206661 206688 56 + . . scaffold43726 GLEAN mRNA 209540 218835 0.998187 - . ID=CGI_10012026; scaffold43726 WUBlastX LINE_RTE-X 211625 211867 85 - . . scaffold43726 TRF Tandem_Repeat 216766 217934 1136 + . . scaffold43726 GLEAN promoter 218836 219835 0.998187 - . ID=CGI_10012026; scaffold43726 GLEAN promoter 220786 221785 0.998252 + . ID=CGI_10012027; scaffold43726 WUBlastX LINE_CR1-L2 221378 221650 82 - . . scaffold43726 GLEAN mRNA 221786 248971 0.998252 + . ID=CGI_10012027; scaffold43726 WUBlastX LINE_CR1-L2 222679 223482 95 - . . scaffold43726 WUBlastX LINE_L2 222955 223572 211 - . . scaffold43726 TRF Tandem_Repeat 245910 245946 74 + . . scaffold43726 GLEAN promoter 248575 249574 0.78038 + . ID=CGI_10012028; scaffold43726 TRF Tandem_Repeat 248724 248749 52 + . . scaffold43726 GLEAN mRNA 249575 275240 0.78038 + . ID=CGI_10012028; scaffold43726 WUBlastX LINE_RTE-X 268426 268956 22 + . . scaffold43726 WUBlastX LINE_RTE-X 268441 268614 83 + . . scaffold43726 TRF Tandem_Repeat 277311 277474 116 + . . scaffold43726 WUBlastX LINE_L1-Tx1 277742 277864 45 - . . scaffold43726 WUBlastX LINE_L1 277763 277897 48 - . . scaffold43726 WUBlastX LINE_L1-Tx1 277900 278040 71 - . . scaffold43726 WUBlastX LINE_RTE-X 278227 278808 201 - . . scaffold43726 WUBlastX LINE_CR1 278425 278880 63 - . . scaffold43726 GLEAN mRNA 285511 304016 0.54482 - . ID=CGI_10012029; scaffold43726 TRF Tandem_Repeat 299638 299686 71 + . . scaffold43726 GLEAN promoter 300055 301054 1 + . ID=CGI_10012030; scaffold43726 GLEAN mRNA 301055 301210 1 + . ID=CGI_10012030; scaffold43726 GLEAN promoter 304017 305016 0.54482 - . ID=CGI_10012029; scaffold43742 GLEAN promoter 1266 2265 0.75969 + . ID=CGI_10012103; scaffold43742 GLEAN mRNA 2266 18030 0.75969 + . ID=CGI_10012103; scaffold43742 GLEAN mRNA 6426 7450 0.531613 - . ID=CGI_10012104; scaffold43742 GLEAN promoter 7451 8450 0.531613 - . ID=CGI_10012104; scaffold43742 TRF Tandem_Repeat 9410 9486 98 + . . scaffold43742 TRF Tandem_Repeat 9412 9486 113 + . . scaffold43742 TRF Tandem_Repeat 14181 14248 57 + . . scaffold43742 TRF Tandem_Repeat 14282 14365 80 + . . scaffold43742 TRF Tandem_Repeat 19092 19143 104 + . . scaffold43742 WUBlastX LINE_RTE-X 24475 24603 49 + . . scaffold43742 WUBlastX LINE_RTE-X 24557 24697 31 + . . scaffold43742 WUBlastX LINE_RTE-X 24702 25601 199 + . . scaffold43742 WUBlastX LINE_RTE-X 24717 25472 325 + . . scaffold43742 WUBlastX DNA_MuDR 25993 26802 209 + . . scaffold43742 WUBlastX DNA_MuDR 26008 26694 259 + . . scaffold43742 TRF Tandem_Repeat 27145 27188 88 + . . scaffold43742 TRF Tandem_Repeat 28910 28973 128 + . . scaffold43742 TRF Tandem_Repeat 38799 38833 70 + . . scaffold43742 GLEAN promoter 42173 43172 1 + . ID=CGI_10012105; scaffold43742 GLEAN mRNA 43173 48825 1 + . ID=CGI_10012105; scaffold43742 GLEAN mRNA 50702 51472 0.995871 - . ID=CGI_10012106; scaffold43742 GLEAN promoter 51473 52472 0.995871 - . ID=CGI_10012106; scaffold43742 TRF Tandem_Repeat 52919 52997 58 + . . scaffold43742 WUBlastX LINE_CR1-L2 57931 58008 36 - . . scaffold43742 WUBlastX LINE_CR1 58046 58285 20 - . . scaffold43742 WUBlastX LINE_CR1 58046 58189 24 - . . scaffold43742 WUBlastX LINE_CR1 58088 58180 28 - . . scaffold43742 WUBlastX LINE_CR1 58136 58180 36 - . . scaffold43742 WUBlastX LINE_CR1 58273 58779 42 - . . scaffold43742 WUBlastX LINE_CR1-L2 58354 58779 110 - . . scaffold43742 WUBlastX LINE_CR1 58657 58803 48 - . . scaffold43742 WUBlastX LINE_CR1-L2 58766 58981 25 - . . scaffold43742 WUBlastX LINE_CR1-L2 58880 59008 22 - . . scaffold43742 WUBlastX LINE_L2 58880 58981 46 - . . scaffold43742 WUBlastX LINE_CR1-L2 58995 59033 20 - . . scaffold43742 TRF Tandem_Repeat 60387 60424 69 + . . scaffold43742 GLEAN mRNA 60574 131442 0.278819 - . ID=CGI_10012107; scaffold43742 TRF Tandem_Repeat 70795 71242 824 + . . scaffold43742 GLEAN promoter 81131 82130 1 + . ID=CGI_10012108; scaffold43742 GLEAN mRNA 82131 89323 1 + . ID=CGI_10012108; scaffold43742 TRF Tandem_Repeat 107971 108718 842 + . . scaffold43742 TRF Tandem_Repeat 121037 121081 51 + . . scaffold43742 TRF Tandem_Repeat 130652 130901 339 + . . scaffold43742 TRF Tandem_Repeat 130652 130930 319 + . . scaffold43742 TRF Tandem_Repeat 130652 130895 173 + . . scaffold43742 TRF Tandem_Repeat 130662 130930 198 + . . scaffold43742 TRF Tandem_Repeat 130682 130919 206 + . . scaffold43742 GLEAN promoter 131443 132442 0.278819 - . ID=CGI_10012107; scaffold43742 GLEAN mRNA 136662 138333 1 - . ID=CGI_10012109; scaffold43742 TRF Tandem_Repeat 137987 138044 107 + . . scaffold43742 GLEAN promoter 138334 139333 1 - . ID=CGI_10012109; scaffold43742 TRF Tandem_Repeat 139832 139875 88 + . . scaffold43742 GLEAN mRNA 140885 169411 0.861148 - . ID=CGI_10012110; scaffold43742 TRF Tandem_Repeat 147850 147906 114 + . . scaffold43742 TRF Tandem_Repeat 151518 151574 114 + . . scaffold43742 GLEAN promoter 169412 170411 0.861148 - . ID=CGI_10012110; scaffold43742 GLEAN mRNA 178901 184069 0.775873 - . ID=CGI_10012111; scaffold43742 GLEAN promoter 184070 185069 0.775873 - . ID=CGI_10012111; scaffold43742 GLEAN promoter 185065 186064 0.990447 + . ID=CGI_10012112; scaffold43742 GLEAN mRNA 186065 190332 0.990447 + . ID=CGI_10012112; scaffold43742 GLEAN promoter 190792 191791 0.351278 + . ID=CGI_10012113; scaffold43742 GLEAN mRNA 191792 220500 0.351278 + . ID=CGI_10012113; scaffold43742 TRF Tandem_Repeat 208591 209005 668 + . . scaffold43742 TRF Tandem_Repeat 208899 208996 55 + . . scaffold43742 TRF Tandem_Repeat 209539 209567 51 + . . scaffold43742 TRF Tandem_Repeat 211624 211666 86 + . . scaffold43742 GLEAN mRNA 217501 227943 0.999999 - . ID=CGI_10012114; scaffold43742 GLEAN promoter 227944 228943 0.999999 - . ID=CGI_10012114; scaffold43742 WUBlastX LINE_RTE-BovB 233341 233535 58 - . . scaffold43742 WUBlastX LINE_RTE-BovB 233383 233559 106 - . . scaffold43742 WUBlastX LINE_RTE-BovB 233538 233852 90 - . . scaffold43742 WUBlastX LINE_RTE-BovB 233538 233930 78 - . . scaffold43742 TRF Tandem_Repeat 234201 234351 155 + . . scaffold43742 TRF Tandem_Repeat 235031 235061 55 + . . scaffold43742 TRF Tandem_Repeat 238765 238796 64 + . . scaffold43742 TRF Tandem_Repeat 239312 239376 123 + . . scaffold43742 GLEAN mRNA 243416 247249 1 - . ID=CGI_10012115; scaffold43742 GLEAN promoter 247250 248249 1 - . ID=CGI_10012115; scaffold43742 TRF Tandem_Repeat 247779 247892 134 + . . scaffold43742 TRF Tandem_Repeat 247786 247886 134 + . . scaffold43742 TRF Tandem_Repeat 247910 248370 581 + . . scaffold43742 GLEAN promoter 247999 248998 1 + . ID=CGI_10012116; scaffold43742 GLEAN mRNA 248999 252146 1 + . ID=CGI_10012116; scaffold43742 GLEAN promoter 254746 255745 0.997818 + . ID=CGI_10012117; scaffold43742 GLEAN mRNA 255746 258383 0.997818 + . ID=CGI_10012117; scaffold43742 GLEAN promoter 258973 259972 0.706246 + . ID=CGI_10012118; scaffold43742 GLEAN mRNA 259973 272295 0.706246 + . ID=CGI_10012118; scaffold43742 TRF Tandem_Repeat 261237 261277 64 + . . scaffold43742 TRF Tandem_Repeat 267091 267456 437 + . . scaffold43742 TRF Tandem_Repeat 267091 267456 484 + . . scaffold43742 TRF Tandem_Repeat 268262 268617 263 + . . scaffold43742 GLEAN mRNA 272236 285419 0.402135 - . ID=CGI_10012119; scaffold43742 GLEAN promoter 285420 286419 0.402135 - . ID=CGI_10012119; scaffold43742 TRF Tandem_Repeat 291038 291097 120 + . . scaffold43742 TRF Tandem_Repeat 291410 291442 66 + . . scaffold43742 GLEAN mRNA 301820 305908 0.958512 - . ID=CGI_10012120; scaffold43742 GLEAN promoter 305909 306908 0.958512 - . ID=CGI_10012120; scaffold43742 WUBlastX LINE_RTE-X 306288 307967 805 - . . scaffold43742 WUBlastX LINE_RTE-BovB 308731 308817 20 - . . scaffold43764 WUBlastX LINE_L2 2292 2339 21 + . . scaffold43764 WUBlastX LINE_L1 2921 3220 23 + . . scaffold43764 WUBlastX LINE_RTE-BovB 3014 3232 40 + . . scaffold43764 WUBlastX LINE_RTE-X 3050 3241 45 + . . scaffold43764 WUBlastX LINE_RTE-X 3226 3699 155 + . . scaffold43764 WUBlastX LINE_RTE-X 3226 3576 171 + . . scaffold43764 WUBlastX LINE_RTE-X 3735 3863 21 + . . scaffold43764 WUBlastX LINE_RTE-X 3886 3945 31 + . . scaffold43764 WUBlastX LINE_RTE-X 3886 3957 27 + . . scaffold43764 TRF Tandem_Repeat 9644 9697 108 + . . scaffold43764 TRF Tandem_Repeat 14645 14702 116 + . . scaffold43764 TRF Tandem_Repeat 15868 15912 90 + . . scaffold43764 TRF Tandem_Repeat 16743 16775 66 + . . scaffold43764 WUBlastX LINE_RTE-X 19829 20023 60 - . . scaffold43764 WUBlastX LINE_RTE-X 19904 20068 80 - . . scaffold43764 WUBlastX LINE_RTE-X 20366 20476 30 - . . scaffold43764 GLEAN promoter 20755 21754 0.343355 + . ID=CGI_10012175; scaffold43764 GLEAN mRNA 21755 22363 0.343355 + . ID=CGI_10012175; scaffold43764 WUBlastX LINE_RTE-BovB 40993 41622 35 - . . scaffold43764 WUBlastX LINE_RTE-X 41089 42516 646 - . . scaffold43764 WUBlastX LINE_L2 41206 42978 177 - . . scaffold43764 TRF Tandem_Repeat 48911 49184 397 + . . scaffold43764 TRF Tandem_Repeat 50353 50601 329 + . . scaffold43764 GLEAN promoter 51538 52537 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 51708 51769 99 + . . scaffold43764 GLEAN mRNA 52538 105580 0.462947 + . ID=CGI_10012176; scaffold43764 TRF Tandem_Repeat 56244 56752 532 + . . scaffold43764 TRF Tandem_Repeat 56244 56752 501 + . . scaffold43764 TRF Tandem_Repeat 58251 58579 326 + . . scaffold43764 TRF Tandem_Repeat 58390 58577 178 + . . scaffold43764 TRF Tandem_Repeat 58840 59438 558 + . . scaffold43764 TRF Tandem_Repeat 58944 59430 582 + . . scaffold43764 TRF Tandem_Repeat 61011 61251 312 + . . scaffold43764 TRF Tandem_Repeat 61438 62070 842 + . . scaffold43764 TRF Tandem_Repeat 64022 64330 513 + . . scaffold43764 TRF Tandem_Repeat 64022 64356 330 + . . scaffold43764 TRF Tandem_Repeat 73960 74042 148 + . . scaffold43764 TRF Tandem_Repeat 74397 75187 907 + . . scaffold43764 TRF Tandem_Repeat 82405 82832 743 + . . scaffold43764 TRF Tandem_Repeat 83621 83868 432 + . . scaffold43764 TRF Tandem_Repeat 101269 101684 411 + . . scaffold43764 TRF Tandem_Repeat 101333 101645 478 + . . scaffold43764 TRF Tandem_Repeat 102933 102983 93 + . . scaffold43764 GLEAN promoter 104769 105768 0.99908 + . ID=CGI_10012177; scaffold43764 GLEAN mRNA 105769 109422 0.99908 + . ID=CGI_10012177; scaffold43764 WUBlastX DNA_TcMar-Tc1 111229 111465 56 + . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111467 111595 22 + . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111813 111875 22 + . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111868 112065 40 + . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111901 112155 59 + . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111901 112098 66 + . . scaffold43764 WUBlastX DNA_TcMar-Tc1 111907 112242 56 + . . scaffold43764 GLEAN mRNA 113491 118281 1 - . ID=CGI_10012178; scaffold43764 TRF Tandem_Repeat 117629 117666 76 + . . scaffold43764 GLEAN promoter 118282 119281 1 - . ID=CGI_10012178; scaffold43764 GLEAN mRNA 121281 149056 0.269979 - . ID=CGI_10012179; scaffold43764 TRF Tandem_Repeat 141178 141437 504 + . . scaffold43764 TRF Tandem_Repeat 142567 142593 54 + . . scaffold43764 TRF Tandem_Repeat 142637 142661 50 + . . scaffold43764 GLEAN promoter 149057 150056 0.269979 - . ID=CGI_10012179; scaffold43764 TRF Tandem_Repeat 150862 150901 80 + . . scaffold43764 GLEAN mRNA 153863 169907 0.746109 - . ID=CGI_10012180; scaffold43764 TRF Tandem_Repeat 154277 154306 60 + . . scaffold43764 GLEAN promoter 169908 170907 0.746109 - . ID=CGI_10012180; scaffold43764 TRF Tandem_Repeat 170811 171445 922 + . . scaffold43764 GLEAN mRNA 172589 184779 1 - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 172661 172691 62 + . . scaffold43764 TRF Tandem_Repeat 182266 182339 86 + . . scaffold43764 TRF Tandem_Repeat 182267 182328 92 + . . scaffold43764 TRF Tandem_Repeat 182269 182338 52 + . . scaffold43764 TRF Tandem_Repeat 183965 184004 71 + . . scaffold43764 GLEAN promoter 184780 185779 1 - . ID=CGI_10012181; scaffold43764 TRF Tandem_Repeat 184954 184987 68 + . . scaffold43764 TRF Tandem_Repeat 185333 185367 70 + . . scaffold43764 TRF Tandem_Repeat 188422 188457 72 + . . scaffold43764 TRF Tandem_Repeat 189308 189381 148 + . . scaffold43764 GLEAN promoter 192430 193429 0.9999 + . ID=CGI_10012182; scaffold43764 TRF Tandem_Repeat 192503 192975 662 + . . scaffold43764 GLEAN mRNA 193430 212500 0.9999 + . ID=CGI_10012182; scaffold43764 TRF Tandem_Repeat 208221 208267 94 + . . scaffold43764 GLEAN promoter 215035 216034 0.879869 + . ID=CGI_10012183; scaffold43764 GLEAN mRNA 216035 240473 0.879869 + . ID=CGI_10012183; scaffold43764 TRF Tandem_Repeat 217818 217870 106 + . . scaffold43764 TRF Tandem_Repeat 217924 217959 63 + . . scaffold43764 TRF Tandem_Repeat 238006 238052 94 + . . scaffold43764 TRF Tandem_Repeat 244614 244682 129 + . . scaffold43764 TRF Tandem_Repeat 250998 251349 641 + . . scaffold43764 TRF Tandem_Repeat 275420 275546 66 + . . scaffold43764 TRF Tandem_Repeat 275443 275662 275 + . . scaffold43764 GLEAN promoter 279897 280896 0.374272 + . ID=CGI_10012184; scaffold43764 GLEAN mRNA 280897 305505 0.374272 + . ID=CGI_10012184; scaffold43764 TRF Tandem_Repeat 306632 306674 50 + . . scaffold43764 TRF Tandem_Repeat 312514 313317 1236 + . . scaffold43772 TRF Tandem_Repeat 24097 24162 125 + . . scaffold43772 TRF Tandem_Repeat 30177 30234 116 + . . scaffold43772 TRF Tandem_Repeat 30395 30448 108 + . . scaffold43772 TRF Tandem_Repeat 50971 51000 60 + . . scaffold43772 WUBlastX LTR_Ngaro 53199 54272 53 - . . scaffold43772 WUBlastX LTR_Ngaro 53229 53846 75 - . . scaffold43772 WUBlastX LTR_Ngaro 53376 54116 199 - . . scaffold43772 TRF Tandem_Repeat 56044 56135 80 + . . scaffold43772 TRF Tandem_Repeat 60481 60718 293 + . . scaffold43772 GLEAN promoter 64173 65172 0.999879 + . ID=CGI_10012268; scaffold43772 GLEAN mRNA 65173 69559 0.999879 + . ID=CGI_10012268; scaffold43772 TRF Tandem_Repeat 72280 72342 126 + . . scaffold43772 TRF Tandem_Repeat 79437 79469 57 + . . scaffold43772 TRF Tandem_Repeat 80313 80352 80 + . . scaffold43772 GLEAN promoter 82124 83123 1 + . ID=CGI_10012269; scaffold43772 GLEAN mRNA 83124 85210 1 + . ID=CGI_10012269; scaffold43772 GLEAN mRNA 92499 105031 0.999676 - . ID=CGI_10012270; scaffold43772 GLEAN promoter 101442 102441 1 + . ID=CGI_10012271; scaffold43772 GLEAN mRNA 102442 107232 1 + . ID=CGI_10012271; scaffold43772 GLEAN promoter 105032 106031 0.999676 - . ID=CGI_10012270; scaffold43772 GLEAN promoter 110647 111646 0.999995 + . ID=CGI_10012272; scaffold43772 GLEAN mRNA 111647 118639 0.999995 + . ID=CGI_10012272; scaffold43772 GLEAN mRNA 119326 123653 0.889922 - . ID=CGI_10012273; scaffold43772 TRF Tandem_Repeat 120123 120165 86 + . . scaffold43772 GLEAN promoter 123654 124653 0.889922 - . ID=CGI_10012273; scaffold43772 GLEAN mRNA 124071 130643 0.999999 - . ID=CGI_10012274; scaffold43772 TRF Tandem_Repeat 125989 126046 116 + . . scaffold43772 GLEAN promoter 130510 131509 0.991285 + . ID=CGI_10012275; scaffold43772 GLEAN promoter 130644 131643 0.999999 - . ID=CGI_10012274; scaffold43772 GLEAN mRNA 131510 155181 0.991285 + . ID=CGI_10012275; scaffold43772 TRF Tandem_Repeat 159305 159335 53 + . . scaffold43772 TRF Tandem_Repeat 163472 163526 76 + . . scaffold43772 TRF Tandem_Repeat 163472 163529 73 + . . scaffold43772 TRF Tandem_Repeat 163473 163526 56 + . . scaffold43772 GLEAN promoter 174438 175437 0.332661 + . ID=CGI_10012276; scaffold43772 GLEAN mRNA 175438 218616 0.332661 + . ID=CGI_10012276; scaffold43772 TRF Tandem_Repeat 185370 185395 52 + . . scaffold43772 TRF Tandem_Repeat 208016 208070 60 + . . scaffold43772 GLEAN mRNA 218499 227457 0.777732 - . ID=CGI_10012277; scaffold43772 GLEAN promoter 227458 228457 0.777732 - . ID=CGI_10012277; scaffold43772 WUBlastX LINE_RTE-X 230431 230517 49 + . . scaffold43772 TRF Tandem_Repeat 230944 230977 68 + . . scaffold43772 GLEAN mRNA 231097 233831 0.999855 - . ID=CGI_10012278; scaffold43772 TRF Tandem_Repeat 231657 231713 114 + . . scaffold43772 TRF Tandem_Repeat 233057 233101 90 + . . scaffold43772 GLEAN promoter 233832 234831 0.999855 - . ID=CGI_10012278; scaffold43772 TRF Tandem_Repeat 242759 242821 101 + . . scaffold43772 TRF Tandem_Repeat 257078 257124 94 + . . scaffold43772 TRF Tandem_Repeat 263095 263130 54 + . . scaffold43772 TRF Tandem_Repeat 264429 264460 64 + . . scaffold43772 WUBlastX DNA_IS4EU 266435 266617 74 - . . scaffold43772 WUBlastX DNA_IS4EU 266619 266981 53 - . . scaffold43772 WUBlastX DNA_IS4EU 267210 267311 21 - . . scaffold43772 TRF Tandem_Repeat 275873 275958 95 + . . scaffold43772 TRF Tandem_Repeat 276045 276273 219 + . . scaffold43772 TRF Tandem_Repeat 276045 276203 194 + . . scaffold43772 TRF Tandem_Repeat 276272 276452 209 + . . scaffold43772 TRF Tandem_Repeat 277659 277718 120 + . . scaffold43772 TRF Tandem_Repeat 278962 278986 50 + . . scaffold43772 GLEAN promoter 295149 296148 0.998417 + . ID=CGI_10012279; scaffold43772 GLEAN mRNA 296149 300035 0.998417 + . ID=CGI_10012279; scaffold43772 WUBlastX DNA_Kolobok 306174 306404 25 + . . scaffold43772 WUBlastX DNA_Kolobok 306595 306762 88 + . . scaffold43782 WUBlastX DNA_TcMar-Fot1 9511 10050 35 - . . scaffold43782 WUBlastX DNA_TcMar-Fot1 9622 10047 91 - . . scaffold43782 WUBlastX DNA_TcMar-Fot1 9709 10047 167 - . . scaffold43782 WUBlastX DNA_TcMar-Fot1 10184 10591 115 - . . scaffold43782 WUBlastX DNA_TcMar-Fot1 10262 10672 47 - . . scaffold43782 WUBlastX LTR_DIRS 18668 19066 25 + . . scaffold43782 WUBlastX LTR_DIRS 19677 19826 69 + . . scaffold43782 GLEAN promoter 20075 21074 0.336088 + . ID=CGI_10012360; scaffold43782 GLEAN mRNA 21075 22674 0.336088 + . ID=CGI_10012360; scaffold43782 WUBlastX LINE_L2 29767 30036 74 - . . scaffold43782 TRF Tandem_Repeat 38742 38779 76 + . . scaffold43782 TRF Tandem_Repeat 39301 39375 150 + . . scaffold43782 GLEAN promoter 39531 40530 0.819556 + . ID=CGI_10012361; scaffold43782 GLEAN mRNA 40531 75619 0.819556 + . ID=CGI_10012361; scaffold43782 TRF Tandem_Repeat 63556 63582 54 + . . scaffold43782 WUBlastX LTR_Gypsy 82223 82996 122 - . . scaffold43782 WUBlastX LTR_Gypsy-Cigr 82346 82912 123 - . . scaffold43782 GLEAN mRNA 83081 83605 0.618155 - . ID=CGI_10012362; scaffold43782 GLEAN promoter 83606 84605 0.618155 - . ID=CGI_10012362; scaffold43782 GLEAN promoter 85451 86450 0.993582 + . ID=CGI_10012363; scaffold43782 GLEAN mRNA 86451 90297 0.993582 + . ID=CGI_10012363; scaffold43782 TRF Tandem_Repeat 88459 88492 68 + . . scaffold43782 TRF Tandem_Repeat 88844 88885 84 + . . scaffold43782 GLEAN promoter 91141 92140 1 + . ID=CGI_10012364; scaffold43782 GLEAN mRNA 92141 94173 1 + . ID=CGI_10012364; scaffold43782 TRF Tandem_Repeat 92955 93033 135 + . . scaffold43782 GLEAN mRNA 95587 102133 1 - . ID=CGI_10012365; scaffold43782 TRF Tandem_Repeat 97254 97299 92 + . . scaffold43782 TRF Tandem_Repeat 100587 100617 62 + . . scaffold43782 GLEAN promoter 101494 102493 0.999947 + . ID=CGI_10012366; scaffold43782 GLEAN promoter 102134 103133 1 - . ID=CGI_10012365; scaffold43782 GLEAN mRNA 102494 129639 0.999947 + . ID=CGI_10012366; scaffold43782 WUBlastX LINE_RTE-X 111476 112273 106 - . . scaffold43782 WUBlastX LINE_RTE-X 112198 112746 193 - . . scaffold43782 WUBlastX LINE_RTE-X 112327 112743 203 - . . scaffold43782 WUBlastX LINE_R2 112588 112815 36 - . . scaffold43782 WUBlastX LINE_RTE-X 112784 113173 218 - . . scaffold43782 WUBlastX LINE_RTE-X 113130 113546 159 - . . scaffold43782 WUBlastX LINE_RTE-X 113190 113471 182 - . . scaffold43782 WUBlastX LINE_L2 113190 113612 44 - . . scaffold43782 WUBlastX LINE_CR1-L2 114028 114084 21 - . . scaffold43782 TRF Tandem_Repeat 114641 114676 72 + . . scaffold43782 TRF Tandem_Repeat 119665 119712 87 + . . scaffold43782 GLEAN promoter 142682 143681 0.674769 + . ID=CGI_10012367; scaffold43782 GLEAN mRNA 143682 159372 0.674769 + . ID=CGI_10012367; scaffold43782 WUBlastX LTR_DIRS 144103 144312 53 + . . scaffold43782 WUBlastX LINE_L1-Tx1 162431 162772 47 - . . scaffold43782 WUBlastX LINE_L1-Tx1 163059 163772 48 - . . scaffold43782 WUBlastX LINE_L1-Tx1 164090 164491 129 - . . scaffold43782 WUBlastX LINE_L1 164138 164554 40 - . . scaffold43782 WUBlastX LINE_RTE-X 166506 166577 28 - . . scaffold43782 WUBlastX LINE_RTE-X 166606 166764 59 - . . scaffold43782 WUBlastX LINE_L1 170438 171034 22 + . . scaffold43782 WUBlastX LINE_L1-Tx1 170546 171250 169 + . . scaffold43782 WUBlastX LINE_L1-Tx1 171225 171392 22 + . . scaffold43782 TRF Tandem_Repeat 176993 177034 66 + . . scaffold43782 TRF Tandem_Repeat 179471 179594 61 + . . scaffold43782 TRF Tandem_Repeat 179489 179632 51 + . . scaffold43782 GLEAN mRNA 196399 197321 0.937808 - . ID=CGI_10012368; scaffold43782 GLEAN promoter 197322 198321 0.937808 - . ID=CGI_10012368; scaffold43782 TRF Tandem_Repeat 197415 197457 86 + . . scaffold43782 TRF Tandem_Repeat 198168 198221 108 + . . scaffold43782 TRF Tandem_Repeat 205860 205914 103 + . . scaffold43782 TRF Tandem_Repeat 228104 228286 111 + . . scaffold43782 TRF Tandem_Repeat 228264 228733 843 + . . scaffold43782 TRF Tandem_Repeat 228711 228809 108 + . . scaffold43782 GLEAN mRNA 233025 250865 1 - . ID=CGI_10012370; scaffold43782 GLEAN promoter 238878 239877 0.64999 + . ID=CGI_10012371; scaffold43782 GLEAN mRNA 239878 255426 0.64999 + . ID=CGI_10012371; scaffold43782 TRF Tandem_Repeat 245013 245045 57 + . . scaffold43782 GLEAN promoter 250866 251865 1 - . ID=CGI_10012370; scaffold43782 WUBlastX LINE_RTE-X 251523 251840 39 + . . scaffold43782 TRF Tandem_Repeat 252061 252112 52 + . . scaffold43782 GLEAN promoter 258188 259187 0.946175 + . ID=CGI_10012372; scaffold43782 GLEAN mRNA 259188 259589 0.946175 + . ID=CGI_10012372; scaffold43782 GLEAN mRNA 262881 275772 1 - . ID=CGI_10012373; scaffold43782 TRF Tandem_Repeat 265354 265474 188 + . . scaffold43782 TRF Tandem_Repeat 266544 266581 76 + . . scaffold43782 TRF Tandem_Repeat 268050 268172 185 + . . scaffold43782 TRF Tandem_Repeat 268060 268188 103 + . . scaffold43782 GLEAN promoter 275773 276772 1 - . ID=CGI_10012373; scaffold43782 TRF Tandem_Repeat 279255 279345 55 + . . scaffold43782 TRF Tandem_Repeat 283990 284015 52 + . . scaffold43782 GLEAN mRNA 284742 286989 1 - . ID=CGI_10012374; scaffold43782 GLEAN promoter 286990 287989 1 - . ID=CGI_10012374; scaffold43782 WUBlastX LINE_L2 289555 289821 40 + . . scaffold43782 TRF Tandem_Repeat 292145 292198 108 + . . scaffold43782 TRF Tandem_Repeat 294454 294500 94 + . . scaffold43782 GLEAN promoter 295526 296525 0.931926 + . ID=CGI_10012375; scaffold43782 GLEAN mRNA 296526 302359 0.931926 + . ID=CGI_10012375; scaffold43782 TRF Tandem_Repeat 304861 304902 59 + . . scaffold43782 TRF Tandem_Repeat 307247 307989 1225 + . . scaffold43782 TRF Tandem_Repeat 308159 308200 50 + . . scaffold43782 TRF Tandem_Repeat 308163 308205 54 + . . scaffold43782 TRF Tandem_Repeat 309372 309404 66 + . . scaffold43782 TRF Tandem_Repeat 311361 311387 54 + . . scaffold43782 TRF Tandem_Repeat 318380 318436 114 + . . scaffold43786 GLEAN promoter 1 527 1 + . ID=CGI_10012344; scaffold43786 GLEAN mRNA 528 6022 1 + . ID=CGI_10012344; scaffold43786 TRF Tandem_Repeat 2531 2561 55 + . . scaffold43786 TRF Tandem_Repeat 4154 4188 52 + . . scaffold43786 TRF Tandem_Repeat 7635 7666 64 + . . scaffold43786 GLEAN promoter 9050 10049 0.928492 + . ID=CGI_10012345; scaffold43786 GLEAN mRNA 10050 36500 0.928492 + . ID=CGI_10012345; scaffold43786 TRF Tandem_Repeat 16550 16723 138 + . . scaffold43786 TRF Tandem_Repeat 21269 21304 54 + . . scaffold43786 TRF Tandem_Repeat 27346 27379 68 + . . scaffold43786 TRF Tandem_Repeat 29438 29601 195 + . . scaffold43786 GLEAN promoter 38202 39201 0.996819 + . ID=CGI_10012346; scaffold43786 GLEAN mRNA 39202 40630 0.996819 + . ID=CGI_10012346; scaffold43786 GLEAN promoter 41980 42979 1 + . ID=CGI_10012347; scaffold43786 GLEAN mRNA 42980 48205 1 + . ID=CGI_10012347; scaffold43786 TRF Tandem_Repeat 45373 45427 110 + . . scaffold43786 TRF Tandem_Repeat 51377 51430 92 + . . scaffold43786 TRF Tandem_Repeat 51733 51808 143 + . . scaffold43786 TRF Tandem_Repeat 56428 56475 80 + . . scaffold43786 TRF Tandem_Repeat 56813 57049 350 + . . scaffold43786 GLEAN mRNA 57956 132417 0.319 - . ID=CGI_10012348; scaffold43786 TRF Tandem_Repeat 60100 60136 74 + . . scaffold43786 TRF Tandem_Repeat 102345 102523 207 + . . scaffold43786 TRF Tandem_Repeat 102345 102558 206 + . . scaffold43786 TRF Tandem_Repeat 102536 103264 342 + . . scaffold43786 TRF Tandem_Repeat 102637 104259 1941 + . . scaffold43786 TRF Tandem_Repeat 102650 102826 223 + . . scaffold43786 TRF Tandem_Repeat 102837 103078 147 + . . scaffold43786 TRF Tandem_Repeat 103093 104284 889 + . . scaffold43786 TRF Tandem_Repeat 119941 119990 66 + . . scaffold43786 TRF Tandem_Repeat 119944 119989 58 + . . scaffold43786 TRF Tandem_Repeat 125034 125231 204 + . . scaffold43786 TRF Tandem_Repeat 125038 125357 170 + . . scaffold43786 GLEAN promoter 132418 133417 0.319 - . ID=CGI_10012348; scaffold43786 GLEAN mRNA 132873 133055 0.733495 - . ID=CGI_10012349; scaffold43786 GLEAN promoter 133056 134055 0.733495 - . ID=CGI_10012349; scaffold43786 GLEAN mRNA 159505 161738 0.999254 - . ID=CGI_10012350; scaffold43786 GLEAN promoter 161739 162738 0.999254 - . ID=CGI_10012350; scaffold43786 GLEAN mRNA 162043 166619 0.999646 - . ID=CGI_10012351; scaffold43786 GLEAN promoter 166620 167619 0.999646 - . ID=CGI_10012351; scaffold43786 TRF Tandem_Repeat 169312 169361 82 + . . scaffold43786 TRF Tandem_Repeat 176913 176968 77 + . . scaffold43786 TRF Tandem_Repeat 176913 176968 89 + . . scaffold43786 TRF Tandem_Repeat 176916 176967 70 + . . scaffold43786 TRF Tandem_Repeat 177088 177138 68 + . . scaffold43786 TRF Tandem_Repeat 177088 177138 68 + . . scaffold43786 TRF Tandem_Repeat 177251 177295 69 + . . scaffold43786 WUBlastX DNA_TcMar-Tc1 178345 178440 47 + . . scaffold43786 WUBlastX DNA_TcMar-Tc1 178442 178759 98 + . . scaffold43786 GLEAN promoter 180917 181916 0.899962 + . ID=CGI_10012352; scaffold43786 GLEAN mRNA 181917 199788 0.899962 + . ID=CGI_10012352; scaffold43786 TRF Tandem_Repeat 185096 185125 60 + . . scaffold43786 TRF Tandem_Repeat 206219 206276 116 + . . scaffold43786 TRF Tandem_Repeat 207877 207933 114 + . . scaffold43786 GLEAN promoter 208050 209049 1 + . ID=CGI_10012353; scaffold43786 GLEAN mRNA 209050 214923 1 + . ID=CGI_10012353; scaffold43786 TRF Tandem_Repeat 212300 212342 86 + . . scaffold43786 GLEAN mRNA 218616 225367 0.999978 - . ID=CGI_10012354; scaffold43786 GLEAN promoter 225368 226367 0.999978 - . ID=CGI_10012354; scaffold43786 TRF Tandem_Repeat 226899 226945 94 + . . scaffold43786 GLEAN mRNA 227480 232476 0.997994 - . ID=CGI_10012355; scaffold43786 TRF Tandem_Repeat 228549 229832 1641 + . . scaffold43786 GLEAN promoter 232477 233476 0.997994 - . ID=CGI_10012355; scaffold43786 GLEAN mRNA 234476 275282 0.999342 - . ID=CGI_10012356; scaffold43786 TRF Tandem_Repeat 234650 234908 80 + . . scaffold43786 TRF Tandem_Repeat 235498 235827 391 + . . scaffold43786 TRF Tandem_Repeat 235498 235837 395 + . . scaffold43786 TRF Tandem_Repeat 241024 241059 72 + . . scaffold43786 TRF Tandem_Repeat 245944 245979 72 + . . scaffold43786 WUBlastX LINE_L1-Tx1 248047 249228 438 - . . scaffold43786 WUBlastX LINE_L1-Tx1 249246 249443 123 - . . scaffold43786 WUBlastX LINE_L1-Tx1 249388 250305 554 - . . scaffold43786 WUBlastX LINE_L1-Tx1 249436 250491 368 - . . scaffold43786 TRF Tandem_Repeat 252853 252904 90 + . . scaffold43786 TRF Tandem_Repeat 253007 253078 87 + . . scaffold43786 TRF Tandem_Repeat 253161 253214 87 + . . scaffold43786 TRF Tandem_Repeat 253163 253215 106 + . . scaffold43786 TRF Tandem_Repeat 260119 260156 76 + . . scaffold43786 TRF Tandem_Repeat 262141 262201 70 + . . scaffold43786 TRF Tandem_Repeat 274833 274878 92 + . . scaffold43786 GLEAN promoter 275283 276282 0.999342 - . ID=CGI_10012356; scaffold43786 GLEAN promoter 276837 277836 0.937808 + . ID=CGI_10012357; scaffold43786 GLEAN mRNA 277837 284131 0.937808 + . ID=CGI_10012357; scaffold43786 TRF Tandem_Repeat 278512 278576 121 + . . scaffold43786 TRF Tandem_Repeat 278512 278587 92 + . . scaffold43786 TRF Tandem_Repeat 279356 279446 182 + . . scaffold43786 TRF Tandem_Repeat 279948 279990 86 + . . scaffold43786 TRF Tandem_Repeat 283642 283675 59 + . . scaffold43786 TRF Tandem_Repeat 283881 283924 54 + . . scaffold43786 TRF Tandem_Repeat 284928 284969 84 + . . scaffold43786 GLEAN promoter 285020 286019 0.999676 + . ID=CGI_10012358; scaffold43786 TRF Tandem_Repeat 285812 285837 52 + . . scaffold43786 TRF Tandem_Repeat 285866 285910 90 + . . scaffold43786 GLEAN mRNA 286020 295946 0.999676 + . ID=CGI_10012358; scaffold43786 TRF Tandem_Repeat 286370 286457 176 + . . scaffold43786 GLEAN mRNA 301695 303955 0.917489 - . ID=CGI_10012359; scaffold43786 GLEAN promoter 303956 304955 0.917489 - . ID=CGI_10012359; scaffold43786 TRF Tandem_Repeat 308091 308117 54 + . . scaffold43786 WUBlastX LINE_RTE-X 322196 323086 144 - . . scaffold43786 WUBlastX LINE_RTE-X 322340 323839 637 - . . scaffold43794 TRF Tandem_Repeat 193 281 110 + . . scaffold43794 TRF Tandem_Repeat 356 515 142 + . . scaffold43794 TRF Tandem_Repeat 367 515 214 + . . scaffold43794 TRF Tandem_Repeat 3250 3318 120 + . . scaffold43794 TRF Tandem_Repeat 3501 3541 55 + . . scaffold43794 GLEAN promoter 3921 4920 0.981219 + . ID=CGI_10012412; scaffold43794 TRF Tandem_Repeat 4598 4663 105 + . . scaffold43794 GLEAN mRNA 4921 11641 0.981219 + . ID=CGI_10012412; scaffold43794 TRF Tandem_Repeat 12006 12191 246 + . . scaffold43794 TRF Tandem_Repeat 14982 15413 268 + . . scaffold43794 TRF Tandem_Repeat 15529 15826 215 + . . scaffold43794 TRF Tandem_Repeat 19912 20083 137 + . . scaffold43794 TRF Tandem_Repeat 20966 22215 1747 + . . scaffold43794 TRF Tandem_Repeat 24324 24365 57 + . . scaffold43794 TRF Tandem_Repeat 24335 24377 52 + . . scaffold43794 TRF Tandem_Repeat 25215 25524 487 + . . scaffold43794 WUBlastX LINE_L1-Tx1 26041 26823 125 - . . scaffold43794 WUBlastX LINE_L1-Tx1 26074 26976 116 - . . scaffold43794 WUBlastX LINE_L1-Tx1 27023 28711 893 - . . scaffold43794 WUBlastX LINE_L1-Tx1 28734 28844 33 - . . scaffold43794 WUBlastX LINE_L1-Tx1 28818 29609 432 - . . scaffold43794 WUBlastX LINE_L1 29587 29682 43 - . . scaffold43794 WUBlastX LINE_L1 29623 29676 45 - . . scaffold43794 WUBlastX LINE_L2 30049 30255 108 - . . scaffold43794 WUBlastX LINE_L2 30294 30389 22 - . . scaffold43794 GLEAN promoter 31292 32291 1 + . ID=CGI_10012413; scaffold43794 GLEAN mRNA 32292 43151 1 + . ID=CGI_10012413; scaffold43794 TRF Tandem_Repeat 37971 38043 146 + . . scaffold43794 TRF Tandem_Repeat 39741 39785 90 + . . scaffold43794 GLEAN mRNA 45449 48413 0.889634 - . ID=CGI_10012414; scaffold43794 GLEAN promoter 48414 49413 0.889634 - . ID=CGI_10012414; scaffold43794 TRF Tandem_Repeat 53244 53286 86 + . . scaffold43794 TRF Tandem_Repeat 59930 60002 146 + . . scaffold43794 TRF Tandem_Repeat 68837 68886 82 + . . scaffold43794 GLEAN promoter 70180 71179 0.727813 + . ID=CGI_10012415; scaffold43794 GLEAN mRNA 71180 73645 0.727813 + . ID=CGI_10012415; scaffold43794 GLEAN mRNA 71859 72719 0.996819 - . ID=CGI_10012416; scaffold43794 GLEAN promoter 72720 73719 0.996819 - . ID=CGI_10012416; scaffold43794 TRF Tandem_Repeat 74583 74622 80 + . . scaffold43794 TRF Tandem_Repeat 80011 80062 104 + . . scaffold43794 GLEAN mRNA 82340 100661 0.914367 - . ID=CGI_10012417; scaffold43794 TRF Tandem_Repeat 84076 84344 375 + . . scaffold43794 TRF Tandem_Repeat 93921 94308 650 + . . scaffold43794 TRF Tandem_Repeat 95938 96026 54 + . . scaffold43794 WUBlastX LINE_RTE-X 97162 97674 70 - . . scaffold43794 WUBlastX LINE_RTE-X 97297 97785 86 - . . scaffold43794 GLEAN promoter 100134 101133 0.777732 + . ID=CGI_10012418; scaffold43794 GLEAN promoter 100662 101661 0.914367 - . ID=CGI_10012417; scaffold43794 GLEAN mRNA 101134 104888 0.777732 + . ID=CGI_10012418; scaffold43794 GLEAN promoter 107159 108158 0.999147 + . ID=CGI_10012419; scaffold43794 GLEAN mRNA 108159 112425 0.999147 + . ID=CGI_10012419; scaffold43794 TRF Tandem_Repeat 130722 130758 74 + . . scaffold43794 TRF Tandem_Repeat 134868 136211 1901 + . . scaffold43794 WUBlastX LINE_L1-Tx1 139316 139510 42 - . . scaffold43794 WUBlastX LINE_L1 140055 140321 45 - . . scaffold43794 WUBlastX LINE_L1 140121 140288 52 - . . scaffold43794 TRF Tandem_Repeat 142309 142341 50 + . . scaffold43794 TRF Tandem_Repeat 144506 144542 74 + . . scaffold43794 WUBlastX LTR_DIRS 146453 146914 219 + . . scaffold43794 WUBlastX LTR_ERV1 146907 147110 26 + . . scaffold43794 WUBlastX LTR_Copia 147006 147110 38 + . . scaffold43794 WUBlastX LTR_DIRS 147138 147851 570 + . . scaffold43794 WUBlastX LTR_DIRS 147204 148007 200 + . . scaffold43794 WUBlastX DNA_Harbinger 148373 148612 55 + . . scaffold43794 WUBlastX DNA_Harbinger 148421 148741 59 + . . scaffold43794 WUBlastX DNA_Harbinger 148421 148642 93 + . . scaffold43794 TRF Tandem_Repeat 148845 148891 94 + . . scaffold43794 WUBlastX DNA_Harbinger 149333 149899 397 + . . scaffold43794 WUBlastX DNA_Harbinger 150042 150239 37 + . . scaffold43794 TRF Tandem_Repeat 151434 151534 118 + . . scaffold43794 TRF Tandem_Repeat 151707 151757 59 + . . scaffold43794 WUBlastX LTR_DIRS 151885 152151 139 + . . scaffold43794 WUBlastX LTR_DIRS 152154 152423 126 + . . scaffold43794 WUBlastX LTR_DIRS 152357 152713 136 + . . scaffold43794 WUBlastX LTR_DIRS 152925 153410 367 + . . scaffold43794 WUBlastX LTR_DIRS 153401 153724 227 + . . scaffold43794 WUBlastX LTR_DIRS? 153730 153819 34 + . . scaffold43794 WUBlastX LINE_L1-Tx1 155778 156029 33 + . . scaffold43794 WUBlastX LTR_Ngaro 173964 174635 108 - . . scaffold43794 WUBlastX LTR_Ngaro 174635 174883 30 - . . scaffold43794 TRF Tandem_Repeat 183251 183286 72 + . . scaffold43794 WUBlastX DNA_Sola 186408 186698 48 - . . scaffold43794 WUBlastX LINE_RTE-BovB 227311 227478 109 - . . scaffold43794 WUBlastX LINE_RTE-RTE 227388 227663 32 - . . scaffold43794 WUBlastX LINE_RTE-BovB 227469 227621 66 - . . scaffold43794 TRF Tandem_Repeat 241076 241131 85 + . . scaffold43794 TRF Tandem_Repeat 247428 247461 68 + . . scaffold43794 GLEAN promoter 256501 257500 0.726785 + . ID=CGI_10012420; scaffold43794 GLEAN mRNA 257501 270559 0.726785 + . ID=CGI_10012420; scaffold43794 TRF Tandem_Repeat 265901 265934 52 + . . scaffold43794 WUBlastX LINE_L1-Tx1 277044 277334 49 - . . scaffold43798 GLEAN mRNA 709 50895 0.990383 - . ID=CGI_10012536; scaffold43798 WUBlastX LINE_L1 1019 1294 20 - . . scaffold43798 TRF Tandem_Repeat 12150 12193 88 + . . scaffold43798 TRF Tandem_Repeat 16586 17344 282 + . . scaffold43798 TRF Tandem_Repeat 16620 16726 92 + . . scaffold43798 TRF Tandem_Repeat 20636 20692 75 + . . scaffold43798 TRF Tandem_Repeat 30826 30876 102 + . . scaffold43798 TRF Tandem_Repeat 35972 36038 89 + . . scaffold43798 TRF Tandem_Repeat 36554 36586 57 + . . scaffold43798 TRF Tandem_Repeat 39365 39431 89 + . . scaffold43798 GLEAN promoter 50896 51895 0.990383 - . ID=CGI_10012536; scaffold43798 TRF Tandem_Repeat 50980 51044 130 + . . scaffold43798 TRF Tandem_Repeat 52714 52780 134 + . . scaffold43798 GLEAN mRNA 68314 77834 0.855803 - . ID=CGI_10012537; scaffold43798 GLEAN promoter 77835 78834 0.855803 - . ID=CGI_10012537; scaffold43798 TRF Tandem_Repeat 78202 78252 57 + . . scaffold43798 TRF Tandem_Repeat 80376 80417 75 + . . scaffold43798 TRF Tandem_Repeat 80561 80589 58 + . . scaffold43798 TRF Tandem_Repeat 82855 82908 99 + . . scaffold43798 TRF Tandem_Repeat 87840 87953 183 + . . scaffold43798 TRF Tandem_Repeat 103516 103558 86 + . . scaffold43798 TRF Tandem_Repeat 110751 110795 72 + . . scaffold43798 TRF Tandem_Repeat 111726 111761 72 + . . scaffold43798 TRF Tandem_Repeat 111933 111976 88 + . . scaffold43798 TRF Tandem_Repeat 112852 112954 57 + . . scaffold43798 TRF Tandem_Repeat 116121 116208 176 + . . scaffold43798 TRF Tandem_Repeat 126385 126519 53 + . . scaffold43798 TRF Tandem_Repeat 126385 126504 99 + . . scaffold43798 WUBlastX DNA_IS4EU 128181 128633 202 + . . scaffold43798 WUBlastX DNA_IS4EU 128205 129701 110 + . . scaffold43798 WUBlastX DNA_IS4EU 128862 129701 306 + . . scaffold43798 TRF Tandem_Repeat 131101 131149 98 + . . scaffold43798 WUBlastX DNA_Sola 132261 132542 70 + . . scaffold43798 WUBlastX DNA_Sola 132877 133116 140 + . . scaffold43798 WUBlastX DNA_Sola 133137 133217 41 + . . scaffold43798 WUBlastX DNA_Sola 133826 134041 163 + . . scaffold43798 WUBlastX DNA_Sola 133838 134101 98 + . . scaffold43798 WUBlastX DNA_Sola 135567 135854 123 + . . scaffold43798 WUBlastX DNA_Sola 135787 136203 182 + . . scaffold43798 WUBlastX DNA_Sola 135874 136263 201 + . . scaffold43798 WUBlastX DNA_Sola 136236 136370 77 + . . scaffold43798 WUBlastX DNA_Sola 136507 136650 29 + . . scaffold43798 WUBlastX DNA_Sola 136555 136650 37 + . . scaffold43798 WUBlastX DNA_Sola 136772 137383 220 + . . scaffold43798 TRF Tandem_Repeat 155157 155242 172 + . . scaffold43798 TRF Tandem_Repeat 158081 158119 78 + . . scaffold43798 WUBlastX LINE_CR1 158284 158523 30 + . . scaffold43798 WUBlastX LINE_CR1-L2 158419 158544 34 + . . scaffold43798 WUBlastX LINE_L2 158428 158571 33 + . . scaffold43798 WUBlastX LINE_L2 158443 158622 21 + . . scaffold43798 WUBlastX LINE_CR1-L2 158654 158947 69 + . . scaffold43798 WUBlastX LINE_CR1 158789 159040 33 + . . scaffold43798 TRF Tandem_Repeat 162313 162379 89 + . . scaffold43798 TRF Tandem_Repeat 162904 162951 78 + . . scaffold43798 TRF Tandem_Repeat 162905 162980 89 + . . scaffold43798 TRF Tandem_Repeat 162929 162979 75 + . . scaffold43798 TRF Tandem_Repeat 163159 163205 94 + . . scaffold43798 TRF Tandem_Repeat 165594 165660 89 + . . scaffold43798 TRF Tandem_Repeat 166779 166835 114 + . . scaffold43798 TRF Tandem_Repeat 168855 168924 69 + . . scaffold43798 TRF Tandem_Repeat 168855 168922 97 + . . scaffold43798 TRF Tandem_Repeat 168863 168922 79 + . . scaffold43798 GLEAN mRNA 174965 176296 0.639926 - . ID=CGI_10012538; scaffold43798 GLEAN promoter 176297 177296 0.639926 - . ID=CGI_10012538; scaffold43798 GLEAN mRNA 182197 207554 0.592879 - . ID=CGI_10012539; scaffold43798 TRF Tandem_Repeat 187135 187284 88 + . . scaffold43798 TRF Tandem_Repeat 194266 194468 388 + . . scaffold43798 TRF Tandem_Repeat 194697 194756 102 + . . scaffold43798 TRF Tandem_Repeat 199190 199591 717 + . . scaffold43798 TRF Tandem_Repeat 199190 199591 717 + . . scaffold43798 TRF Tandem_Repeat 199191 199591 743 + . . scaffold43798 TRF Tandem_Repeat 203672 203711 71 + . . scaffold43798 GLEAN promoter 207042 208041 1 + . ID=CGI_10012540; scaffold43798 GLEAN promoter 207555 208554 0.592879 - . ID=CGI_10012539; scaffold43798 GLEAN mRNA 208042 215653 1 + . ID=CGI_10012540; scaffold43798 TRF Tandem_Repeat 212945 212975 62 + . . scaffold43798 TRF Tandem_Repeat 214070 214415 575 + . . scaffold43798 TRF Tandem_Repeat 215784 215838 103 + . . scaffold43798 GLEAN mRNA 218198 224413 0.651135 - . ID=CGI_10012541; scaffold43798 TRF Tandem_Repeat 218672 218734 126 + . . scaffold43798 TRF Tandem_Repeat 223054 223182 88 + . . scaffold43798 TRF Tandem_Repeat 223891 223928 76 + . . scaffold43798 TRF Tandem_Repeat 224315 224360 92 + . . scaffold43798 GLEAN promoter 224414 225413 0.651135 - . ID=CGI_10012541; scaffold43798 TRF Tandem_Repeat 225548 225715 60 + . . scaffold43798 TRF Tandem_Repeat 230140 230179 80 + . . scaffold43798 WUBlastX DNA_TcMar-Marin 241054 241284 23 - . . scaffold43798 GLEAN promoter 254601 255600 1 + . ID=CGI_10012542; scaffold43798 TRF Tandem_Repeat 254761 254832 87 + . . scaffold43798 TRF Tandem_Repeat 254772 254832 79 + . . scaffold43798 TRF Tandem_Repeat 254831 254862 55 + . . scaffold43798 GLEAN mRNA 255601 258668 1 + . ID=CGI_10012542; scaffold43798 TRF Tandem_Repeat 256732 256768 74 + . . scaffold43798 TRF Tandem_Repeat 257076 257130 110 + . . scaffold43798 TRF Tandem_Repeat 261173 261241 120 + . . scaffold43798 TRF Tandem_Repeat 261429 261470 75 + . . scaffold43798 GLEAN mRNA 269421 281801 0.999622 - . ID=CGI_10012543; scaffold43798 TRF Tandem_Repeat 275823 275868 83 + . . scaffold43798 TRF Tandem_Repeat 279100 279181 157 + . . scaffold43798 GLEAN promoter 281802 282801 0.999622 - . ID=CGI_10012543; scaffold43798 TRF Tandem_Repeat 282814 283025 424 + . . scaffold43798 TRF Tandem_Repeat 283686 283756 142 + . . scaffold43798 TRF Tandem_Repeat 284007 284047 82 + . . scaffold43798 GLEAN promoter 286561 287560 0.59158 + . ID=CGI_10012544; scaffold43798 GLEAN mRNA 287561 307914 0.59158 + . ID=CGI_10012544; scaffold43798 TRF Tandem_Repeat 288666 288805 226 + . . scaffold43798 TRF Tandem_Repeat 289837 289885 98 + . . scaffold43798 TRF Tandem_Repeat 294806 294876 124 + . . scaffold43798 TRF Tandem_Repeat 295942 295970 58 + . . scaffold43798 TRF Tandem_Repeat 300618 300676 118 + . . scaffold43798 TRF Tandem_Repeat 305691 306172 489 + . . scaffold43798 GLEAN mRNA 310190 319173 0.882457 - . ID=CGI_10012545; scaffold43798 TRF Tandem_Repeat 312595 312631 74 + . . scaffold43798 TRF Tandem_Repeat 315865 315907 86 + . . scaffold43798 TRF Tandem_Repeat 318934 319041 139 + . . scaffold43798 GLEAN promoter 319174 320173 0.882457 - . ID=CGI_10012545; scaffold43798 TRF Tandem_Repeat 319676 319725 100 + . . scaffold43798 TRF Tandem_Repeat 319874 319920 94 + . . scaffold43798 TRF Tandem_Repeat 319990 320036 94 + . . scaffold43798 GLEAN mRNA 323858 327921 0.621751 - . ID=CGI_10012546; scaffold43798 GLEAN promoter 327922 328011 0.621751 - . ID=CGI_10012546; scaffold43804 GLEAN mRNA 20555 21734 1 - . ID=CGI_10012547; scaffold43804 GLEAN promoter 21735 22734 1 - . ID=CGI_10012547; scaffold43804 GLEAN promoter 22653 23652 0.649698 + . ID=CGI_10012548; scaffold43804 GLEAN mRNA 23653 37787 0.649698 + . ID=CGI_10012548; scaffold43804 WUBlastX LINE_L1-Tx1 26414 26716 106 - . . scaffold43804 TRF Tandem_Repeat 40932 40994 126 + . . scaffold43804 TRF Tandem_Repeat 42792 42859 109 + . . scaffold43804 TRF Tandem_Repeat 43786 43826 82 + . . scaffold43804 TRF Tandem_Repeat 50140 50190 57 + . . scaffold43804 TRF Tandem_Repeat 50144 50197 63 + . . scaffold43804 TRF Tandem_Repeat 50196 50292 185 + . . scaffold43804 TRF Tandem_Repeat 50959 51035 154 + . . scaffold43804 TRF Tandem_Repeat 51194 51237 65 + . . scaffold43804 TRF Tandem_Repeat 57264 57328 130 + . . scaffold43804 TRF Tandem_Repeat 60212 60256 90 + . . scaffold43804 TRF Tandem_Repeat 61616 61735 219 + . . scaffold43804 TRF Tandem_Repeat 62588 62628 82 + . . scaffold43804 TRF Tandem_Repeat 69018 69051 68 + . . scaffold43804 TRF Tandem_Repeat 78362 78467 122 + . . scaffold43804 WUBlastX LINE_CR1-L2 83376 84872 653 - . . scaffold43804 TRF Tandem_Repeat 89143 89215 146 + . . scaffold43804 GLEAN promoter 89980 90979 0.98605 + . ID=CGI_10012549; scaffold43804 GLEAN mRNA 90980 97312 0.98605 + . ID=CGI_10012549; scaffold43804 GLEAN promoter 105395 106394 0.604708 + . ID=CGI_10012550; scaffold43804 GLEAN mRNA 106395 115086 0.604708 + . ID=CGI_10012550; scaffold43804 TRF Tandem_Repeat 107024 107092 138 + . . scaffold43804 GLEAN promoter 114825 115824 0.893185 + . ID=CGI_10012551; scaffold43804 GLEAN mRNA 115825 118574 0.893185 + . ID=CGI_10012551; scaffold43804 TRF Tandem_Repeat 117941 117972 57 + . . scaffold43804 TRF Tandem_Repeat 119604 119634 55 + . . scaffold43804 TRF Tandem_Repeat 119766 119824 118 + . . scaffold43804 GLEAN mRNA 120598 125402 0.997714 - . ID=CGI_10012552; scaffold43804 GLEAN promoter 125403 126402 0.997714 - . ID=CGI_10012552; scaffold43804 GLEAN mRNA 134190 144364 0.583667 - . ID=CGI_10012553; scaffold43804 TRF Tandem_Repeat 137449 137736 183 + . . scaffold43804 TRF Tandem_Repeat 137831 137927 88 + . . scaffold43804 TRF Tandem_Repeat 140983 141046 112 + . . scaffold43804 GLEAN promoter 144365 145364 0.583667 - . ID=CGI_10012553; scaffold43804 WUBlastX LINE_RTE-X 147505 147954 62 + . . scaffold43804 WUBlastX LINE_RTE-X 147562 147840 77 + . . scaffold43804 WUBlastX LINE_RTE-X 147598 148248 52 + . . scaffold43804 TRF Tandem_Repeat 151125 151208 168 + . . scaffold43804 GLEAN mRNA 151648 152100 0.957347 - . ID=CGI_10012554; scaffold43804 GLEAN promoter 152101 153100 0.957347 - . ID=CGI_10012554; scaffold43804 GLEAN promoter 161810 162809 1 + . ID=CGI_10012555; scaffold43804 GLEAN mRNA 162810 163559 1 + . ID=CGI_10012555; scaffold43804 TRF Tandem_Repeat 165919 166782 1379 + . . scaffold43804 TRF Tandem_Repeat 167828 167858 62 + . . scaffold43804 TRF Tandem_Repeat 168798 168873 118 + . . scaffold43804 GLEAN mRNA 171251 172006 1 - . ID=CGI_10012556; scaffold43804 WUBlastX LINE_CR1 171386 171976 43 - . . scaffold43804 GLEAN promoter 172007 173006 1 - . ID=CGI_10012556; scaffold43804 TRF Tandem_Repeat 174647 174685 78 + . . scaffold43804 TRF Tandem_Repeat 174736 174808 146 + . . scaffold43804 GLEAN promoter 175010 176009 0.999351 + . ID=CGI_10012557; scaffold43804 GLEAN mRNA 176010 194871 0.999351 + . ID=CGI_10012557; scaffold43804 TRF Tandem_Repeat 192304 192679 474 + . . scaffold43804 TRF Tandem_Repeat 193164 193955 1142 + . . scaffold43804 GLEAN mRNA 197830 202888 0.953498 - . ID=CGI_10012558; scaffold43804 GLEAN promoter 202889 203888 0.953498 - . ID=CGI_10012558; scaffold43804 GLEAN mRNA 206873 222843 0.544849 - . ID=CGI_10012559; scaffold43804 WUBlastX LINE_L2 208107 208580 91 + . . scaffold43804 WUBlastX LINE_RTE-X 213118 214191 298 + . . scaffold43804 TRF Tandem_Repeat 214528 214552 50 + . . scaffold43804 GLEAN promoter 214590 215589 1 + . ID=CGI_10012560; scaffold43804 GLEAN mRNA 215590 218421 1 + . ID=CGI_10012560; scaffold43804 GLEAN promoter 222844 223843 0.544849 - . ID=CGI_10012559; scaffold43804 GLEAN mRNA 228888 229315 0.999999 - . ID=CGI_10012561; scaffold43804 GLEAN promoter 229316 230315 0.999999 - . ID=CGI_10012561; scaffold43804 GLEAN mRNA 232134 252939 0.991965 - . ID=CGI_10012562; scaffold43804 TRF Tandem_Repeat 241516 241571 112 + . . scaffold43804 TRF Tandem_Repeat 244871 244925 101 + . . scaffold43804 GLEAN promoter 252940 253939 0.991965 - . ID=CGI_10012562; scaffold43804 GLEAN mRNA 254746 257441 0.997732 - . ID=CGI_10012563; scaffold43804 GLEAN promoter 257442 258441 0.997732 - . ID=CGI_10012563; scaffold43804 TRF Tandem_Repeat 264943 264980 58 + . . scaffold43804 TRF Tandem_Repeat 266700 266947 304 + . . scaffold43804 WUBlastX DNA_hAT-Tip100 268555 269064 47 - . . scaffold43804 WUBlastX DNA_hAT-Tip100 268585 268989 111 - . . scaffold43804 WUBlastX DNA_hAT-Tip100 268964 269092 20 - . . scaffold43804 WUBlastX DNA_hAT-Tip100 269410 269598 25 - . . scaffold43804 WUBlastX DNA_hAT-Tip100 269703 271088 58 - . . scaffold43804 WUBlastX DNA_hAT-Tip100 269997 271205 155 - . . scaffold43804 WUBlastX DNA_hAT-Tip100 270069 271052 274 - . . scaffold43804 WUBlastX LTR_Gypsy 276132 276179 20 - . . scaffold43804 WUBlastX LTR_Gypsy 276232 277740 879 - . . scaffold43804 WUBlastX LTR_Gypsy 277749 278306 421 - . . scaffold43804 WUBlastX LTR_Gypsy 278306 279382 674 - . . scaffold43804 WUBlastX LTR_Gypsy 278327 280021 673 - . . scaffold43804 WUBlastX LTR_Gypsy 285238 289116 3056 - . . scaffold43804 WUBlastX LTR_Gypsy 289254 290027 118 - . . scaffold43804 TRF Tandem_Repeat 300159 300307 163 + . . scaffold43804 TRF Tandem_Repeat 300328 300538 165 + . . scaffold43804 WUBlastX LTR_Ngaro 313892 314857 379 - . . scaffold43804 WUBlastX LTR_Ngaro 314860 316305 570 - . . scaffold43804 WUBlastX LTR_Ngaro 316558 317280 74 - . . scaffold43804 WUBlastX LTR_Ngaro 316720 317373 174 - . . scaffold43804 WUBlastX LTR_Gypsy 318185 318592 27 - . . scaffold43804 WUBlastX LTR_Gypsy 318314 318592 46 - . . scaffold43804 WUBlastX LTR_Gypsy 318356 318592 65 - . . scaffold43804 WUBlastX LTR_Gypsy 318600 318725 93 - . . scaffold43804 WUBlastX LTR_Gypsy 318721 318822 22 - . . scaffold43804 WUBlastX LTR_Gypsy 318742 318852 90 - . . scaffold43804 WUBlastX LTR_Gypsy 318872 318934 49 - . . scaffold43804 WUBlastX LTR_Gypsy 318901 319320 193 - . . scaffold43804 WUBlastX LTR_Gypsy 319344 319889 145 - . . scaffold43804 WUBlastX LTR_Gypsy 319837 320208 103 - . . scaffold43804 WUBlastX LTR_Gypsy 319925 320110 146 - . . scaffold43804 WUBlastX LTR_Gypsy 321008 323488 1723 - . . scaffold43804 WUBlastX LTR_Gypsy 322880 323596 230 - . . scaffold43804 WUBlastX LTR_Gypsy 324098 324196 21 - . . scaffold43804 WUBlastX LTR_Gypsy 324305 324409 20 - . . scaffold43804 TRF Tandem_Repeat 326015 326057 86 + . . scaffold43818 TRF Tandem_Repeat 3388 3982 852 + . . scaffold43818 TRF Tandem_Repeat 3472 3945 228 + . . scaffold43818 TRF Tandem_Repeat 3540 3875 213 + . . scaffold43818 GLEAN promoter 5495 6494 1 + . ID=CGI_10012753; scaffold43818 GLEAN mRNA 6495 8926 1 + . ID=CGI_10012753; scaffold43818 GLEAN mRNA 12882 23286 1 - . ID=CGI_10012754; scaffold43818 GLEAN promoter 23287 24286 1 - . ID=CGI_10012754; scaffold43818 TRF Tandem_Repeat 24591 24651 122 + . . scaffold43818 GLEAN promoter 26560 27559 0.999768 + . ID=CGI_10012755; scaffold43818 TRF Tandem_Repeat 26955 26999 90 + . . scaffold43818 GLEAN mRNA 27560 30019 0.999768 + . ID=CGI_10012755; scaffold43818 WUBlastX LINE_RTE-BovB 32547 32792 72 + . . scaffold43818 WUBlastX LINE_RTE-BovB 32604 32951 57 + . . scaffold43818 WUBlastX LINE_RTE-BovB 32607 32792 81 + . . scaffold43818 WUBlastX LINE_RTE-BovB 32610 32837 64 + . . scaffold43818 TRF Tandem_Repeat 34190 34220 62 + . . scaffold43818 GLEAN mRNA 47866 58580 0.999998 - . ID=CGI_10012756; scaffold43818 TRF Tandem_Repeat 49903 50115 354 + . . scaffold43818 TRF Tandem_Repeat 50087 50820 1155 + . . scaffold43818 GLEAN promoter 58581 59580 0.999998 - . ID=CGI_10012756; scaffold43818 GLEAN promoter 65927 66926 0.430152 + . ID=CGI_10012758; scaffold43818 GLEAN mRNA 66927 70487 0.430152 + . ID=CGI_10012758; scaffold43818 WUBlastX LINE_CR1-L2 74983 75603 95 + . . scaffold43818 WUBlastX LINE_L2 75151 75603 135 + . . scaffold43818 GLEAN mRNA 81028 105072 0.999948 - . ID=CGI_10012759; scaffold43818 TRF Tandem_Repeat 90227 90632 695 + . . scaffold43818 TRF Tandem_Repeat 90599 90981 273 + . . scaffold43818 TRF Tandem_Repeat 96121 96174 108 + . . scaffold43818 TRF Tandem_Repeat 100008 100069 124 + . . scaffold43818 GLEAN promoter 105073 106072 0.999948 - . ID=CGI_10012759; scaffold43818 GLEAN promoter 106408 107407 0.836238 + . ID=CGI_10012760; scaffold43818 GLEAN mRNA 107408 112593 0.836238 + . ID=CGI_10012760; scaffold43818 TRF Tandem_Repeat 115843 115911 50 + . . scaffold43818 TRF Tandem_Repeat 115854 116091 79 + . . scaffold43818 TRF Tandem_Repeat 117402 118147 898 + . . scaffold43818 TRF Tandem_Repeat 121839 122318 757 + . . scaffold43818 TRF Tandem_Repeat 121839 122318 688 + . . scaffold43818 TRF Tandem_Repeat 123853 123949 69 + . . scaffold43818 TRF Tandem_Repeat 123853 123952 66 + . . scaffold43818 TRF Tandem_Repeat 125280 125327 96 + . . scaffold43818 GLEAN promoter 129056 130055 1 + . ID=CGI_10012762; scaffold43818 GLEAN mRNA 129870 136664 0.999957 - . ID=CGI_10012761; scaffold43818 GLEAN mRNA 130056 136590 1 + . ID=CGI_10012762; scaffold43818 GLEAN promoter 136665 137664 0.999957 - . ID=CGI_10012761; scaffold43818 GLEAN mRNA 157697 160585 1 - . ID=CGI_10012763; scaffold43818 GLEAN promoter 160586 161585 1 - . ID=CGI_10012763; scaffold43818 GLEAN promoter 162066 163065 0.999949 + . ID=CGI_10012764; scaffold43818 GLEAN mRNA 163066 175252 0.999949 + . ID=CGI_10012764; scaffold43818 TRF Tandem_Repeat 175656 175692 74 + . . scaffold43818 GLEAN mRNA 179813 190257 0.999624 - . ID=CGI_10012765; scaffold43818 TRF Tandem_Repeat 181555 181774 323 + . . scaffold43818 TRF Tandem_Repeat 186568 187462 1070 + . . scaffold43818 GLEAN promoter 187862 188861 0.999997 + . ID=CGI_10012766; scaffold43818 GLEAN mRNA 188862 206391 0.999997 + . ID=CGI_10012766; scaffold43818 GLEAN promoter 190258 191257 0.999624 - . ID=CGI_10012765; scaffold43818 TRF Tandem_Repeat 192045 192114 56 + . . scaffold43818 TRF Tandem_Repeat 192181 192235 110 + . . scaffold43818 TRF Tandem_Repeat 192598 192647 100 + . . scaffold43818 TRF Tandem_Repeat 192647 192686 80 + . . scaffold43818 WUBlastX DNA_TcMar-Marin 202157 202408 22 + . . scaffold43818 WUBlastX DNA_TcMar-Marin 202322 202402 30 + . . scaffold43818 GLEAN mRNA 209159 220050 0.561388 - . ID=CGI_10012767; scaffold43818 TRF Tandem_Repeat 216312 216375 83 + . . scaffold43818 GLEAN promoter 220051 221050 0.561388 - . ID=CGI_10012767; scaffold43818 GLEAN mRNA 222362 226645 0.999674 - . ID=CGI_10012768; scaffold43818 GLEAN promoter 226388 227387 0.985093 + . ID=CGI_10012769; scaffold43818 GLEAN promoter 226646 227645 0.999674 - . ID=CGI_10012768; scaffold43818 GLEAN mRNA 227388 230281 0.985093 + . ID=CGI_10012769; scaffold43818 WUBlastX DNA_TcMar-Marin 236284 236583 75 - . . scaffold43818 GLEAN mRNA 240296 240970 0.999372 - . ID=CGI_10012770; scaffold43818 GLEAN promoter 240971 241970 0.999372 - . ID=CGI_10012770; scaffold43818 GLEAN mRNA 241149 243245 0.993907 - . ID=CGI_10012771; scaffold43818 GLEAN promoter 243246 244245 0.993907 - . ID=CGI_10012771; scaffold43818 GLEAN mRNA 243508 251468 0.580184 - . ID=CGI_10012772; scaffold43818 GLEAN promoter 251469 252468 0.580184 - . ID=CGI_10012772; scaffold43818 WUBlastX LTR_ERV1 251852 252574 48 + . . scaffold43818 WUBlastX LTR_Gypsy 252080 252877 398 + . . scaffold43818 WUBlastX LTR_Gypsy 252161 253078 90 + . . scaffold43818 WUBlastX LTR_Gypsy 253168 257040 3245 + . . scaffold43818 GLEAN promoter 258212 259211 0.997869 + . ID=CGI_10012774; scaffold43818 GLEAN mRNA 259212 278747 0.997869 + . ID=CGI_10012774; scaffold43818 GLEAN mRNA 261875 274635 1 - . ID=CGI_10012775; scaffold43818 TRF Tandem_Repeat 266093 266142 66 + . . scaffold43818 TRF Tandem_Repeat 266648 266701 67 + . . scaffold43818 TRF Tandem_Repeat 266648 266701 58 + . . scaffold43818 TRF Tandem_Repeat 266651 266696 58 + . . scaffold43818 GLEAN promoter 274636 275635 1 - . ID=CGI_10012775; scaffold43818 WUBlastX DNA_TcMar-Marin 276248 276805 125 + . . scaffold43818 WUBlastX DNA_TcMar-Marin 276392 276973 139 + . . scaffold43818 WUBlastX DNA_TcMar-Marin 276392 276826 169 + . . scaffold43818 GLEAN promoter 288235 289234 0.999254 + . ID=CGI_10012776; scaffold43818 GLEAN mRNA 289235 314722 0.999254 + . ID=CGI_10012776; scaffold43818 GLEAN promoter 317880 318879 0.37766 + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy 317920 318447 86 + . . scaffold43818 WUBlastX LTR_Gypsy-Cigr 318121 318594 146 + . . scaffold43818 WUBlastX LTR_Gypsy-Cigr 318136 318756 119 + . . scaffold43818 GLEAN mRNA 318880 322672 0.37766 + . ID=CGI_10012777; scaffold43818 WUBlastX LTR_Gypsy 321314 321757 74 + . . scaffold43818 WUBlastX LTR_Gypsy-Cigr 321431 321904 152 + . . scaffold43818 WUBlastX LTR_Gypsy-Cigr 321446 322069 109 + . . scaffold43818 WUBlastX LTR_Gypsy 321605 322156 52 + . . scaffold43818 GLEAN promoter 324023 325022 0.596002 + . ID=CGI_10012778; scaffold43818 GLEAN mRNA 325023 332374 0.596002 + . ID=CGI_10012778; scaffold43818 WUBlastX LINE_RTE-X 329055 329189 39 + . . scaffold43818 WUBlastX LINE_RTE-X 329099 329668 149 + . . scaffold43818 WUBlastX LINE_RTE-X 329204 329668 187 + . . scaffold43818 WUBlastX LINE_RTE-X 329680 330288 221 + . . scaffold43818 WUBlastX LINE_RTE-X 330335 330691 50 + . . scaffold43818 TRF Tandem_Repeat 333529 333581 106 + . . scaffold43836 WUBlastX LTR_Copia 1943 2014 25 - . . scaffold43836 WUBlastX LTR_Gypsy 2596 3441 249 - . . scaffold43836 WUBlastX LTR_Gypsy-Cigr 2779 3516 415 - . . scaffold43836 WUBlastX LTR_Gypsy 2845 3402 488 - . . scaffold43836 WUBlastX LTR_Gypsy 3452 3931 184 - . . scaffold43836 WUBlastX LTR_Gypsy-Cigr 3707 4015 113 - . . scaffold43836 WUBlastX LTR_Gypsy-Cigr 3855 4061 94 - . . scaffold43836 WUBlastX LTR_Gypsy 3924 4088 53 - . . scaffold43836 TRF Tandem_Repeat 10663 10721 73 + . . scaffold43836 WUBlastX LTR_DIRS 12369 12809 246 - . . scaffold43836 WUBlastX LTR_DIRS 12802 13359 156 - . . scaffold43836 TRF Tandem_Repeat 13497 13860 398 + . . scaffold43836 WUBlastX LTR_DIRS 13941 14297 162 - . . scaffold43836 WUBlastX DNA_IS4EU 16342 16422 38 + . . scaffold43836 WUBlastX DNA_IS4EU 17333 17518 80 + . . scaffold43836 WUBlastX DNA_IS4EU 17640 18179 274 - . . scaffold43836 WUBlastX DNA_IS4EU 18206 18349 39 - . . scaffold43836 WUBlastX LTR_DIRS 19475 19810 158 - . . scaffold43836 WUBlastX LTR_DIRS 20237 20629 92 - . . scaffold43836 WUBlastX LTR_DIRS 20622 21011 240 - . . scaffold43836 WUBlastX LTR_DIRS 21616 21666 22 - . . scaffold43836 WUBlastX DNA_Harbinger 34699 34911 53 + . . scaffold43836 WUBlastX DNA_Harbinger 35115 35213 42 + . . scaffold43836 TRF Tandem_Repeat 35327 35382 112 + . . scaffold43836 WUBlastX DNA_Harbinger 35496 35675 40 + . . scaffold43836 WUBlastX DNA_Harbinger 35523 35633 48 + . . scaffold43836 WUBlastX DNA_Harbinger 35712 35822 40 + . . scaffold43836 WUBlastX DNA_Harbinger 37211 37321 26 - . . scaffold43836 WUBlastX DNA_Harbinger 37826 37951 55 - . . scaffold43836 TRF Tandem_Repeat 40161 40198 67 + . . scaffold43836 GLEAN mRNA 44155 46804 0.54468 - . ID=CGI_10013049; scaffold43836 GLEAN promoter 46805 47804 0.54468 - . ID=CGI_10013049; scaffold43836 GLEAN mRNA 50977 59515 0.921761 - . ID=CGI_10013050; scaffold43836 GLEAN promoter 59516 60515 0.921761 - . ID=CGI_10013050; scaffold43836 GLEAN promoter 62288 63287 0.999676 + . ID=CGI_10013051; scaffold43836 GLEAN mRNA 63288 78456 0.999676 + . ID=CGI_10013051; scaffold43836 TRF Tandem_Repeat 78310 78426 62 + . . scaffold43836 GLEAN mRNA 85700 86542 0.999572 - . ID=CGI_10013052; scaffold43836 GLEAN promoter 86543 87542 0.999572 - . ID=CGI_10013052; scaffold43836 GLEAN promoter 89733 90732 0.999348 + . ID=CGI_10013053; scaffold43836 GLEAN mRNA 90733 98080 0.999348 + . ID=CGI_10013053; scaffold43836 TRF Tandem_Repeat 91396 91454 118 + . . scaffold43836 GLEAN mRNA 93944 94099 0.776794 - . ID=CGI_10013054; scaffold43836 GLEAN promoter 94100 95099 0.776794 - . ID=CGI_10013054; scaffold43836 GLEAN promoter 97707 98706 1 + . ID=CGI_10013055; scaffold43836 TRF Tandem_Repeat 98095 98618 843 + . . scaffold43836 GLEAN mRNA 98707 101334 1 + . ID=CGI_10013055; scaffold43836 TRF Tandem_Repeat 110578 110636 118 + . . scaffold43836 GLEAN promoter 111849 112848 1 + . ID=CGI_10013056; scaffold43836 GLEAN mRNA 112849 117601 1 + . ID=CGI_10013056; scaffold43836 TRF Tandem_Repeat 135307 135334 56 + . . scaffold43836 GLEAN promoter 144495 145494 1 + . ID=CGI_10013057; scaffold43836 TRF Tandem_Repeat 144627 144750 131 + . . scaffold43836 GLEAN mRNA 145495 146333 1 + . ID=CGI_10013057; scaffold43836 TRF Tandem_Repeat 149270 149318 98 + . . scaffold43836 GLEAN mRNA 177252 179829 1 - . ID=CGI_10013058; scaffold43836 GLEAN promoter 179830 180829 1 - . ID=CGI_10013058; scaffold43836 TRF Tandem_Repeat 183505 183565 68 + . . scaffold43836 TRF Tandem_Repeat 183505 183565 86 + . . scaffold43836 WUBlastX LINE_L1-Tx1 189595 189804 38 + . . scaffold43836 TRF Tandem_Repeat 195000 195104 85 + . . scaffold43836 TRF Tandem_Repeat 196246 196350 103 + . . scaffold43836 WUBlastX DNA_Harbinger 199892 200263 185 + . . scaffold43836 WUBlastX DNA_Harbinger 201779 202771 684 - . . scaffold43836 GLEAN promoter 203075 204074 0.997691 + . ID=CGI_10013059; scaffold43836 GLEAN mRNA 204075 207902 0.997691 + . ID=CGI_10013059; scaffold43836 TRF Tandem_Repeat 204958 205016 118 + . . scaffold43836 TRF Tandem_Repeat 208129 208259 103 + . . scaffold43836 TRF Tandem_Repeat 208163 208271 67 + . . scaffold43836 TRF Tandem_Repeat 210008 210631 218 + . . scaffold43836 TRF Tandem_Repeat 211650 212605 287 + . . scaffold43836 TRF Tandem_Repeat 211752 212551 220 + . . scaffold43836 TRF Tandem_Repeat 211995 212432 535 + . . scaffold43836 TRF Tandem_Repeat 214546 214705 86 + . . scaffold43836 GLEAN promoter 216671 217670 0.999994 + . ID=CGI_10013060; scaffold43836 GLEAN mRNA 217671 222904 0.999994 + . ID=CGI_10013060; scaffold43836 TRF Tandem_Repeat 226108 226331 301 + . . scaffold43836 TRF Tandem_Repeat 228461 229534 1438 + . . scaffold43836 GLEAN promoter 232435 233434 0.999128 + . ID=CGI_10013061; scaffold43836 GLEAN mRNA 233435 246233 0.999128 + . ID=CGI_10013061; scaffold43836 TRF Tandem_Repeat 237003 237581 448 + . . scaffold43836 TRF Tandem_Repeat 237265 237527 187 + . . scaffold43836 TRF Tandem_Repeat 237442 237597 125 + . . scaffold43836 TRF Tandem_Repeat 242211 242263 106 + . . scaffold43836 GLEAN mRNA 242579 251086 0.650911 - . ID=CGI_10013062; scaffold43836 WUBlastX LINE_RTE-X 243749 245176 499 - . . scaffold43836 WUBlastX LINE_CR1 244388 245335 88 - . . scaffold43836 WUBlastX LINE_RTE-X 248439 248681 120 + . . scaffold43836 WUBlastX LINE_RTE-X 248636 248827 128 + . . scaffold43836 WUBlastX LINE_RTE-X 248848 249804 157 + . . scaffold43836 GLEAN promoter 251087 252086 0.650911 - . ID=CGI_10013062; scaffold43836 GLEAN promoter 251512 252511 0.999949 + . ID=CGI_10013063; scaffold43836 GLEAN mRNA 252512 257988 0.999949 + . ID=CGI_10013063; scaffold43836 GLEAN mRNA 258164 262229 0.240295 - . ID=CGI_10013064; scaffold43836 TRF Tandem_Repeat 259543 259609 53 + . . scaffold43836 TRF Tandem_Repeat 261464 261498 70 + . . scaffold43836 GLEAN promoter 262230 263229 0.240295 - . ID=CGI_10013064; scaffold43836 WUBlastX LINE_L2 264387 264842 362 - . . scaffold43836 GLEAN promoter 277137 278136 1 + . ID=CGI_10013065; scaffold43836 GLEAN mRNA 278137 281585 1 + . ID=CGI_10013065; scaffold43836 WUBlastX LTR_Pao 291055 293097 346 + . . scaffold43836 WUBlastX LTR_Pao 291604 293097 440 + . . scaffold43836 WUBlastX LTR_Pao 292003 293178 475 + . . scaffold43836 WUBlastX LTR_Pao 293081 293998 683 + . . scaffold43836 WUBlastX LTR_Pao 294004 294087 35 + . . scaffold43836 WUBlastX LTR_Pao 294066 294995 588 + . . scaffold43836 WUBlastX LTR_Pao 295034 295393 82 + . . scaffold43836 WUBlastX LTR_Pao 295118 295807 566 + . . scaffold43836 WUBlastX LTR_Pao 295767 296510 545 + . . scaffold43836 WUBlastX LTR_Ngaro 298614 299591 405 - . . scaffold43836 WUBlastX LTR_Ngaro 299507 300046 311 - . . scaffold43836 WUBlastX LTR_Ngaro 299971 300345 173 - . . scaffold43836 WUBlastX LTR_Ngaro 300040 300573 89 - . . scaffold43836 WUBlastX LTR_Ngaro 300816 301154 168 - . . scaffold43836 WUBlastX LTR_Ngaro 301240 301974 125 - . . scaffold43836 WUBlastX LTR_Ngaro 301408 301857 224 - . . scaffold43836 WUBlastX LTR_Ngaro 301462 302016 186 - . . scaffold43836 WUBlastX LINE_RTE-X 312201 312539 82 - . . scaffold43836 WUBlastX LINE_RTE-X 312345 312539 119 - . . scaffold43836 TRF Tandem_Repeat 326652 326700 98 + . . scaffold43836 TRF Tandem_Repeat 326880 326920 82 + . . scaffold43836 WUBlastX LINE_L1-Tx1 330726 330809 23 + . . scaffold43836 WUBlastX LINE_L1-Tx1 330757 331170 49 + . . scaffold43836 WUBlastX LINE_L1-Tx1 330826 331209 120 + . . scaffold43836 WUBlastX DNA_IS4EU 331684 331878 29 - . . scaffold43836 WUBlastX DNA_IS4EU 331828 331881 33 - . . scaffold43836 WUBlastX DNA_IS4EU 332801 332929 44 - . . scaffold43836 TRF Tandem_Repeat 337643 337684 59 + . . scaffold43836 TRF Tandem_Repeat 344378 344423 92 + . . scaffold43842 TRF Tandem_Repeat 317 521 351 + . . scaffold43842 GLEAN mRNA 496 5194 1 - . ID=CGI_10013092; scaffold43842 TRF Tandem_Repeat 2802 2854 79 + . . scaffold43842 GLEAN promoter 5195 6194 1 - . ID=CGI_10013092; scaffold43842 TRF Tandem_Repeat 6369 6402 59 + . . scaffold43842 GLEAN promoter 8781 9780 0.911226 + . ID=CGI_10013093; scaffold43842 GLEAN mRNA 9781 13780 0.911226 + . ID=CGI_10013093; scaffold43842 TRF Tandem_Repeat 12260 12316 105 + . . scaffold43842 TRF Tandem_Repeat 16696 16745 91 + . . scaffold43842 TRF Tandem_Repeat 20584 20726 189 + . . scaffold43842 TRF Tandem_Repeat 20590 20678 69 + . . scaffold43842 GLEAN promoter 23401 24400 0.776555 + . ID=CGI_10013095; scaffold43842 GLEAN mRNA 23841 25649 0.961876 - . ID=CGI_10013094; scaffold43842 TRF Tandem_Repeat 24047 24087 82 + . . scaffold43842 TRF Tandem_Repeat 24085 24125 82 + . . scaffold43842 GLEAN promoter 24395 25394 0.872516 + . ID=CGI_10013096; scaffold43842 GLEAN mRNA 24401 24616 0.776555 + . ID=CGI_10013095; scaffold43842 GLEAN mRNA 25395 59294 0.872516 + . ID=CGI_10013096; scaffold43842 GLEAN promoter 25650 26649 0.961876 - . ID=CGI_10013094; scaffold43842 TRF Tandem_Repeat 28426 28851 525 + . . scaffold43842 TRF Tandem_Repeat 28426 28819 519 + . . scaffold43842 TRF Tandem_Repeat 28506 28609 64 + . . scaffold43842 TRF Tandem_Repeat 29227 29892 1118 + . . scaffold43842 TRF Tandem_Repeat 30930 31161 392 + . . scaffold43842 TRF Tandem_Repeat 36782 37851 1122 + . . scaffold43842 TRF Tandem_Repeat 38928 40433 2128 + . . scaffold43842 TRF Tandem_Repeat 39877 39961 52 + . . scaffold43842 TRF Tandem_Repeat 40101 40150 50 + . . scaffold43842 TRF Tandem_Repeat 42237 42519 471 + . . scaffold43842 TRF Tandem_Repeat 45479 45845 635 + . . scaffold43842 TRF Tandem_Repeat 47953 48452 501 + . . scaffold43842 TRF Tandem_Repeat 48101 48556 382 + . . scaffold43842 TRF Tandem_Repeat 48152 48415 187 + . . scaffold43842 TRF Tandem_Repeat 49924 50870 838 + . . scaffold43842 TRF Tandem_Repeat 51373 51808 710 + . . scaffold43842 TRF Tandem_Repeat 52673 52728 112 + . . scaffold43842 TRF Tandem_Repeat 53530 53933 357 + . . scaffold43842 TRF Tandem_Repeat 53553 53933 439 + . . scaffold43842 TRF Tandem_Repeat 56831 57324 362 + . . scaffold43842 TRF Tandem_Repeat 56845 57324 498 + . . scaffold43842 GLEAN promoter 63643 64642 1 + . ID=CGI_10013097; scaffold43842 GLEAN mRNA 64643 69888 1 + . ID=CGI_10013097; scaffold43842 TRF Tandem_Repeat 65738 65775 76 + . . scaffold43842 TRF Tandem_Repeat 66033 66060 56 + . . scaffold43842 WUBlastX LINE_RTE-BovB 66542 66853 186 - . . scaffold43842 TRF Tandem_Repeat 68053 68110 116 + . . scaffold43842 GLEAN promoter 71885 72884 0.648288 + . ID=CGI_10013098; scaffold43842 GLEAN mRNA 72885 97760 0.648288 + . ID=CGI_10013098; scaffold43842 TRF Tandem_Repeat 76893 77091 344 + . . scaffold43842 TRF Tandem_Repeat 77320 77364 90 + . . scaffold43842 TRF Tandem_Repeat 90226 90386 173 + . . scaffold43842 TRF Tandem_Repeat 90226 90386 202 + . . scaffold43842 TRF Tandem_Repeat 95699 95761 126 + . . scaffold43842 TRF Tandem_Repeat 96581 97356 801 + . . scaffold43842 TRF Tandem_Repeat 96581 97356 778 + . . scaffold43842 TRF Tandem_Repeat 96582 97353 586 + . . scaffold43842 GLEAN mRNA 99220 113113 0.87872 - . ID=CGI_10013099; scaffold43842 TRF Tandem_Repeat 101226 102054 850 + . . scaffold43842 TRF Tandem_Repeat 101247 102156 373 + . . scaffold43842 TRF Tandem_Repeat 102230 102323 64 + . . scaffold43842 TRF Tandem_Repeat 103783 103894 152 + . . scaffold43842 TRF Tandem_Repeat 105976 106438 793 + . . scaffold43842 GLEAN promoter 110243 111242 0.999887 + . ID=CGI_10013100; scaffold43842 GLEAN mRNA 111243 124607 0.999887 + . ID=CGI_10013100; scaffold43842 GLEAN promoter 113114 114113 0.87872 - . ID=CGI_10013099; scaffold43842 TRF Tandem_Repeat 115923 115956 68 + . . scaffold43842 TRF Tandem_Repeat 115956 115995 80 + . . scaffold43842 TRF Tandem_Repeat 116610 116650 82 + . . scaffold43842 TRF Tandem_Repeat 117265 117316 104 + . . scaffold43842 TRF Tandem_Repeat 119695 119778 159 + . . scaffold43842 TRF Tandem_Repeat 121175 122145 1621 + . . scaffold43842 GLEAN promoter 124063 125062 0.996199 + . ID=CGI_10013101; scaffold43842 GLEAN mRNA 125063 126085 0.996199 + . ID=CGI_10013101; scaffold43842 TRF Tandem_Repeat 127535 127574 80 + . . scaffold43842 GLEAN mRNA 130354 152294 0.592188 - . ID=CGI_10013102; scaffold43842 TRF Tandem_Repeat 130401 131182 1044 + . . scaffold43842 TRF Tandem_Repeat 133632 133671 80 + . . scaffold43842 TRF Tandem_Repeat 138896 139658 1040 + . . scaffold43842 GLEAN promoter 152295 153294 0.592188 - . ID=CGI_10013102; scaffold43842 GLEAN mRNA 160282 183977 0.37168 - . ID=CGI_10013103; scaffold43842 TRF Tandem_Repeat 170886 170925 71 + . . scaffold43842 TRF Tandem_Repeat 171996 172125 137 + . . scaffold43842 GLEAN promoter 183978 184977 0.37168 - . ID=CGI_10013103; scaffold43842 GLEAN promoter 185219 186218 0.99996 + . ID=CGI_10013104; scaffold43842 GLEAN mRNA 186219 196229 0.99996 + . ID=CGI_10013104; scaffold43842 WUBlastX LINE_L2 191790 192554 273 - . . scaffold43842 WUBlastX LINE_L2 192147 192671 91 - . . scaffold43842 WUBlastX LINE_RTE-X 193262 193540 99 + . . scaffold43842 WUBlastX LINE_RTE-X 193494 194351 359 + . . scaffold43842 WUBlastX LINE_RTE-X 195593 195772 47 + . . scaffold43842 WUBlastX LINE_RTE-X 195593 195811 31 + . . scaffold43842 TRF Tandem_Repeat 204872 204908 58 + . . scaffold43842 TRF Tandem_Repeat 208832 208862 53 + . . scaffold43842 GLEAN mRNA 211525 222543 0.557237 - . ID=CGI_10013105; scaffold43842 TRF Tandem_Repeat 212604 212661 57 + . . scaffold43842 TRF Tandem_Repeat 212605 212711 60 + . . scaffold43842 TRF Tandem_Repeat 212625 212700 63 + . . scaffold43842 WUBlastX LINE_RTE-X 218788 219501 151 - . . scaffold43842 WUBlastX LINE_CR1 219427 219549 30 - . . scaffold43842 WUBlastX LINE_L2 219624 220832 104 - . . scaffold43842 WUBlastX LINE_RTE-X 219879 220829 643 - . . scaffold43842 WUBlastX LINE_RTE-X 219969 221180 210 - . . scaffold43842 WUBlastX LINE_RTE-X 221138 221485 100 - . . scaffold43842 WUBlastX LINE_RTE-X 221538 222101 182 - . . scaffold43842 GLEAN promoter 222544 223543 0.557237 - . ID=CGI_10013105; scaffold43842 GLEAN mRNA 222782 252762 0.997279 - . ID=CGI_10013106; scaffold43842 WUBlastX LINE_RTE-BovB 223132 223215 29 - . . scaffold43842 TRF Tandem_Repeat 234111 234145 70 + . . scaffold43842 GLEAN promoter 237630 238629 0.526049 + . ID=CGI_10013107; scaffold43842 GLEAN mRNA 238630 263260 0.526049 + . ID=CGI_10013107; scaffold43842 TRF Tandem_Repeat 241007 241046 80 + . . scaffold43842 WUBlastX DNA_IS4EU 248475 248834 50 + . . scaffold43842 WUBlastX DNA_IS4EU 249359 249526 35 + . . scaffold43842 WUBlastX DNA_IS4EU 249662 249715 29 + . . scaffold43842 WUBlastX DNA_IS4EU 249721 249906 54 + . . scaffold43842 WUBlastX DNA_IS4EU 249984 250238 69 + . . scaffold43842 WUBlastX DNA_IS4EU 249984 250190 104 + . . scaffold43842 GLEAN promoter 252763 253762 0.997279 - . ID=CGI_10013106; scaffold43842 TRF Tandem_Repeat 257555 257678 212 + . . scaffold43842 TRF Tandem_Repeat 259782 259889 180 + . . scaffold43842 GLEAN mRNA 259908 272166 0.999373 - . ID=CGI_10013108; scaffold43842 TRF Tandem_Repeat 260574 260811 231 + . . scaffold43842 TRF Tandem_Repeat 265500 265737 230 + . . scaffold43842 TRF Tandem_Repeat 269625 269672 87 + . . scaffold43842 GLEAN promoter 271399 272398 1 + . ID=CGI_10013109; scaffold43842 GLEAN promoter 272167 273166 0.999373 - . ID=CGI_10013108; scaffold43842 GLEAN mRNA 272399 273026 1 + . ID=CGI_10013109; scaffold43842 GLEAN mRNA 273040 292618 0.447101 - . ID=CGI_10013110; scaffold43842 GLEAN promoter 281281 282280 0.843996 + . ID=CGI_10013111; scaffold43842 GLEAN mRNA 282281 303325 0.843996 + . ID=CGI_10013111; scaffold43842 TRF Tandem_Repeat 283143 283201 109 + . . scaffold43842 TRF Tandem_Repeat 285763 285904 214 + . . scaffold43842 GLEAN promoter 292619 293618 0.447101 - . ID=CGI_10013110; scaffold43842 GLEAN mRNA 302984 304234 0.999637 - . ID=CGI_10013112; scaffold43842 GLEAN promoter 304235 305234 0.999637 - . ID=CGI_10013112; scaffold43842 WUBlastX DNA_IS4EU 311007 311711 345 + . . scaffold43842 WUBlastX DNA_IS4EU 311130 311705 366 + . . scaffold43842 WUBlastX DNA_Kolobok-IS4 312158 312814 244 - . . scaffold43842 WUBlastX DNA_IS4EU 313263 313532 69 - . . scaffold43842 WUBlastX DNA_Crypton 314793 314960 37 + . . scaffold43842 TRF Tandem_Repeat 316720 317021 353 + . . scaffold43842 TRF Tandem_Repeat 317942 317993 104 + . . scaffold43842 WUBlastX DNA_Merlin 329407 329592 25 - . . scaffold43842 WUBlastX DNA_Merlin 330110 330415 51 - . . scaffold43842 GLEAN promoter 331730 332729 0.523839 + . ID=CGI_10013113; scaffold43842 GLEAN mRNA 332730 337586 0.523839 + . ID=CGI_10013113; scaffold43842 GLEAN mRNA 339574 339783 0.866307 - . ID=CGI_10013114; scaffold43842 WUBlastX LINE_RTE-X 339586 339963 43 - . . scaffold43842 GLEAN promoter 339784 340783 0.866307 - . ID=CGI_10013114; scaffold43842 WUBlastX LTR_Gypsy 340298 340390 22 - . . scaffold43842 WUBlastX LTR_Ngaro 340320 341201 388 - . . scaffold43842 WUBlastX LTR_Ngaro 341222 342691 975 - . . scaffold43842 WUBlastX LTR_Ngaro 342937 343533 105 - . . scaffold43842 WUBlastX LTR_Ngaro 343087 343791 182 - . . scaffold43842 TRF Tandem_Repeat 343875 343901 54 + . . scaffold43844 TRF Tandem_Repeat 556 1323 949 + . . scaffold43844 TRF Tandem_Repeat 2178 2308 50 + . . scaffold43844 TRF Tandem_Repeat 2355 2432 63 + . . scaffold43844 TRF Tandem_Repeat 8535 8600 80 + . . scaffold43844 TRF Tandem_Repeat 18579 18657 113 + . . scaffold43844 GLEAN promoter 24294 25293 0.772929 + . ID=CGI_10013142; scaffold43844 GLEAN mRNA 25294 39194 0.772929 + . ID=CGI_10013142; scaffold43844 TRF Tandem_Repeat 31389 31486 169 + . . scaffold43844 GLEAN promoter 44606 45605 0.991553 + . ID=CGI_10013143; scaffold43844 TRF Tandem_Repeat 44688 44744 87 + . . scaffold43844 GLEAN mRNA 45606 49282 0.991553 + . ID=CGI_10013143; scaffold43844 TRF Tandem_Repeat 49362 49403 75 + . . scaffold43844 TRF Tandem_Repeat 61257 61310 99 + . . scaffold43844 GLEAN promoter 67115 68114 0.427075 + . ID=CGI_10013144; scaffold43844 GLEAN mRNA 68115 82714 0.427075 + . ID=CGI_10013144; scaffold43844 TRF Tandem_Repeat 86599 86686 68 + . . scaffold43844 TRF Tandem_Repeat 87405 88231 1276 + . . scaffold43844 WUBlastX DNA_PiggyBac 89930 90361 91 + . . scaffold43844 WUBlastX DNA_PiggyBac 90107 90349 103 + . . scaffold43844 WUBlastX DNA_PiggyBac 90149 90415 133 + . . scaffold43844 WUBlastX DNA_PiggyBac 90420 90545 37 + . . scaffold43844 TRF Tandem_Repeat 92372 92477 130 + . . scaffold43844 TRF Tandem_Repeat 92372 92477 130 + . . scaffold43844 TRF Tandem_Repeat 94058 94089 64 + . . scaffold43844 TRF Tandem_Repeat 98790 98898 112 + . . scaffold43844 TRF Tandem_Repeat 98790 98898 113 + . . scaffold43844 WUBlastX LINE_Penelope 98997 99371 100 + . . scaffold43844 WUBlastX LINE_Penelope 99388 99972 101 + . . scaffold43844 WUBlastX LINE_Penelope 99397 99840 170 + . . scaffold43844 TRF Tandem_Repeat 106941 106973 57 + . . scaffold43844 WUBlastX LTR_Gypsy 111566 111796 48 + . . scaffold43844 TRF Tandem_Repeat 125632 125673 50 + . . scaffold43844 GLEAN mRNA 125934 126671 0.990794 - . ID=CGI_10013145; scaffold43844 GLEAN promoter 126672 127671 0.990794 - . ID=CGI_10013145; scaffold43844 WUBlastX LTR_Gypsy 131373 131453 27 + . . scaffold43844 TRF Tandem_Repeat 137662 137712 102 + . . scaffold43844 GLEAN mRNA 138221 138631 0.528961 - . ID=CGI_10013146; scaffold43844 GLEAN promoter 138632 139631 0.528961 - . ID=CGI_10013146; scaffold43844 GLEAN promoter 139609 140608 0.911331 + . ID=CGI_10013147; scaffold43844 WUBlastX RC_Helitron 140507 140620 37 + . . scaffold43844 GLEAN mRNA 140609 151100 0.911331 + . ID=CGI_10013147; scaffold43844 WUBlastX RC_Helitron 141075 141296 31 + . . scaffold43844 TRF Tandem_Repeat 142653 142704 54 + . . scaffold43844 TRF Tandem_Repeat 148167 148266 78 + . . scaffold43844 TRF Tandem_Repeat 148168 148266 67 + . . scaffold43844 WUBlastX LINE_L1 151377 151646 22 - . . scaffold43844 WUBlastX LINE_L1-Tx1 151422 153134 432 - . . scaffold43844 WUBlastX LINE_L1-Tx1 153209 154123 303 - . . scaffold43844 GLEAN mRNA 154226 154744 1 - . ID=CGI_10013148; scaffold43844 GLEAN promoter 154745 155744 1 - . ID=CGI_10013148; scaffold43844 WUBlastX LINE_CR1 154817 155563 96 - . . scaffold43844 GLEAN promoter 157934 158933 0.959194 + . ID=CGI_10013149; scaffold43844 WUBlastX DNA_Kolobok-IS4 158458 158505 29 + . . scaffold43844 GLEAN mRNA 158934 159421 0.959194 + . ID=CGI_10013149; scaffold43844 WUBlastX DNA_Kolobok-IS4 159940 160071 25 + . . scaffold43844 WUBlastX DNA_IS4EU 160067 160483 301 + . . scaffold43844 WUBlastX DNA_IS4EU 160519 161013 134 - . . scaffold43844 WUBlastX DNA_IS4EU 161048 161263 38 - . . scaffold43844 WUBlastX DNA_Kolobok-IS4 161051 161215 48 - . . scaffold43844 WUBlastX LTR_Gypsy 171144 171254 33 - . . scaffold43844 WUBlastX LTR_Gypsy 171165 172160 485 - . . scaffold43844 WUBlastX LTR_Gypsy 171441 172181 509 - . . scaffold43844 GLEAN promoter 174109 175108 1 + . ID=CGI_10013150; scaffold43844 GLEAN mRNA 175109 180432 1 + . ID=CGI_10013150; scaffold43844 TRF Tandem_Repeat 175501 175641 90 + . . scaffold43844 TRF Tandem_Repeat 175543 175642 182 + . . scaffold43844 TRF Tandem_Repeat 180186 180246 122 + . . scaffold43844 TRF Tandem_Repeat 180939 181084 119 + . . scaffold43844 GLEAN promoter 181095 182094 0.917611 + . ID=CGI_10013151; scaffold43844 GLEAN mRNA 182095 193587 0.917611 + . ID=CGI_10013151; scaffold43844 TRF Tandem_Repeat 185088 185325 228 + . . scaffold43844 TRF Tandem_Repeat 185089 185379 241 + . . scaffold43844 TRF Tandem_Repeat 185214 185379 142 + . . scaffold43844 WUBlastX DNA_TcMar-Marin 185935 186333 96 + . . scaffold43844 WUBlastX DNA_TcMar-Marin 185935 186198 116 + . . scaffold43844 WUBlastX DNA_TcMar-Marin 186675 187070 189 + . . scaffold43844 WUBlastX DNA_TcMar-Marin 186729 187061 243 + . . scaffold43844 WUBlastX DNA_TcMar-Marin 187252 187656 230 + . . scaffold43844 GLEAN promoter 198137 199136 0.999994 + . ID=CGI_10013152; scaffold43844 GLEAN mRNA 199137 200587 0.999994 + . ID=CGI_10013152; scaffold43844 TRF Tandem_Repeat 200028 200073 92 + . . scaffold43844 GLEAN promoter 202195 203194 1 + . ID=CGI_10013153; scaffold43844 TRF Tandem_Repeat 202930 203006 54 + . . scaffold43844 GLEAN mRNA 203195 205806 1 + . ID=CGI_10013153; scaffold43844 TRF Tandem_Repeat 206909 206961 106 + . . scaffold43844 TRF Tandem_Repeat 207594 207667 139 + . . scaffold43844 TRF Tandem_Repeat 208139 208180 84 + . . scaffold43844 TRF Tandem_Repeat 209432 209466 54 + . . scaffold43844 TRF Tandem_Repeat 223121 223154 68 + . . scaffold43844 GLEAN promoter 233119 234118 0.41328 + . ID=CGI_10013154; scaffold43844 GLEAN mRNA 234119 244641 0.41328 + . ID=CGI_10013154; scaffold43844 TRF Tandem_Repeat 237323 237374 50 + . . scaffold43844 TRF Tandem_Repeat 245051 245216 296 + . . scaffold43844 GLEAN mRNA 247645 278826 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 249262 249305 54 + . . scaffold43844 TRF Tandem_Repeat 257839 258352 769 + . . scaffold43844 TRF Tandem_Repeat 257867 257969 71 + . . scaffold43844 TRF Tandem_Repeat 268711 269335 957 + . . scaffold43844 TRF Tandem_Repeat 268711 269335 957 + . . scaffold43844 TRF Tandem_Repeat 271279 271353 100 + . . scaffold43844 TRF Tandem_Repeat 272122 272180 118 + . . scaffold43844 TRF Tandem_Repeat 273358 273394 74 + . . scaffold43844 TRF Tandem_Repeat 278483 278565 166 + . . scaffold43844 GLEAN promoter 278827 279826 0.963522 - . ID=CGI_10013155; scaffold43844 TRF Tandem_Repeat 283063 283209 73 + . . scaffold43844 TRF Tandem_Repeat 283125 283254 93 + . . scaffold43844 GLEAN promoter 284318 285317 0.999926 + . ID=CGI_10013156; scaffold43844 TRF Tandem_Repeat 284476 284731 72 + . . scaffold43844 TRF Tandem_Repeat 284485 284631 73 + . . scaffold43844 GLEAN mRNA 285318 288387 0.999926 + . ID=CGI_10013156; scaffold43844 TRF Tandem_Repeat 290330 290354 50 + . . scaffold43844 TRF Tandem_Repeat 290546 290575 60 + . . scaffold43844 TRF Tandem_Repeat 291003 291227 211 + . . scaffold43844 TRF Tandem_Repeat 291003 291227 249 + . . scaffold43844 TRF Tandem_Repeat 294103 294155 79 + . . scaffold43844 TRF Tandem_Repeat 294112 294155 70 + . . scaffold43844 TRF Tandem_Repeat 301243 301287 90 + . . scaffold43844 GLEAN mRNA 301911 302114 0.619518 - . ID=CGI_10013157; scaffold43844 GLEAN promoter 302115 303114 0.619518 - . ID=CGI_10013157; scaffold43844 GLEAN mRNA 309906 310766 0.397976 - . ID=CGI_10013158; scaffold43844 GLEAN promoter 310767 311766 0.397976 - . ID=CGI_10013158; scaffold43844 WUBlastX LTR_ERVK 313673 313933 20 - . . scaffold43844 WUBlastX LTR_Gypsy 317651 318205 213 - . . scaffold43844 WUBlastX LTR_Gypsy 317738 318193 293 - . . scaffold43844 WUBlastX LTR_Gypsy 317783 318289 82 - . . scaffold43844 WUBlastX LTR_Gypsy 318211 318336 71 - . . scaffold43844 WUBlastX LTR_Gypsy 318238 318372 44 - . . scaffold43844 WUBlastX LTR_Gypsy 318339 318386 21 - . . scaffold43844 WUBlastX LTR_Gypsy 318339 318416 20 - . . scaffold43844 TRF Tandem_Repeat 318699 318743 72 + . . scaffold43844 WUBlastX LTR_Gypsy 318918 319001 26 - . . scaffold43844 WUBlastX LTR_Gypsy 322512 322862 46 - . . scaffold43844 WUBlastX LTR_Gypsy 322599 322844 46 - . . scaffold43844 WUBlastX LTR_Gypsy 322647 322925 78 - . . scaffold43844 WUBlastX LTR_Gypsy 322674 323105 68 - . . scaffold43844 WUBlastX LTR_Gypsy 323169 323990 285 - . . scaffold43844 WUBlastX LTR_Gypsy 323298 324023 292 - . . scaffold43844 WUBlastX LTR_Gypsy 323469 324764 396 - . . scaffold43844 WUBlastX LTR_Gypsy-Cigr 323469 324032 409 - . . scaffold43844 WUBlastX LTR_Gypsy 324618 324797 44 - . . scaffold43844 WUBlastX LTR_Gypsy 324705 324821 24 - . . scaffold43844 WUBlastX LTR_Gypsy 324835 325146 27 - . . scaffold43844 WUBlastX LTR_Gypsy 325676 325840 37 - . . scaffold43844 WUBlastX LTR_Gypsy-Cigr 327839 327958 24 - . . scaffold43844 WUBlastX LTR_Gypsy 328181 328246 24 - . . scaffold43844 WUBlastX LTR_Gypsy 328261 328635 152 - . . scaffold43844 WUBlastX LTR_Gypsy-Cigr 328267 328569 204 - . . scaffold43844 WUBlastX LTR_Gypsy 328267 328710 138 - . . scaffold43844 WUBlastX LTR_Gypsy 328725 328775 22 - . . scaffold43844 TRF Tandem_Repeat 329173 329925 755 + . . scaffold43844 GLEAN mRNA 336769 342093 0.990892 - . ID=CGI_10013159; scaffold43844 GLEAN promoter 342094 343093 0.990892 - . ID=CGI_10013159; scaffold43844 GLEAN mRNA 342094 342309 0.999372 - . ID=CGI_10013160; scaffold43844 GLEAN promoter 342310 343309 0.999372 - . ID=CGI_10013160; scaffold43844 TRF Tandem_Repeat 344928 344965 60 + . . scaffold43868 TRF Tandem_Repeat 1266 1610 367 + . . scaffold43868 TRF Tandem_Repeat 1293 1606 457 + . . scaffold43868 TRF Tandem_Repeat 2008 2040 66 + . . scaffold43868 TRF Tandem_Repeat 4566 4606 82 + . . scaffold43868 TRF Tandem_Repeat 9325 9387 108 + . . scaffold43868 TRF Tandem_Repeat 11494 11532 78 + . . scaffold43868 GLEAN mRNA 12276 17376 0.993028 - . ID=CGI_10013648; scaffold43868 GLEAN promoter 13140 14139 1 + . ID=CGI_10013649; scaffold43868 GLEAN mRNA 14140 17333 1 + . ID=CGI_10013649; scaffold43868 WUBlastX DNA_hAT 14158 14343 121 + . . scaffold43868 WUBlastX DNA_hAT 14621 15031 109 + . . scaffold43868 WUBlastX DNA_hAT 15414 15590 100 + . . scaffold43868 WUBlastX DNA_hAT 15843 16211 283 + . . scaffold43868 WUBlastX DNA_hAT 16516 16734 93 + . . scaffold43868 WUBlastX DNA_hAT 16516 16689 103 + . . scaffold43868 WUBlastX DNA_hAT 16847 17023 150 + . . scaffold43868 GLEAN promoter 17377 18376 0.993028 - . ID=CGI_10013648; scaffold43868 GLEAN mRNA 19454 46035 0.999676 - . ID=CGI_10013650; scaffold43868 TRF Tandem_Repeat 24038 24074 74 + . . scaffold43868 GLEAN promoter 38710 39709 0.999027 + . ID=CGI_10013651; scaffold43868 GLEAN mRNA 39710 52527 0.999027 + . ID=CGI_10013651; scaffold43868 GLEAN promoter 46036 47035 0.999676 - . ID=CGI_10013650; scaffold43868 GLEAN promoter 59264 60263 0.999676 + . ID=CGI_10013652; scaffold43868 GLEAN mRNA 60264 66955 0.999676 + . ID=CGI_10013652; scaffold43868 TRF Tandem_Repeat 70609 72250 681 + . . scaffold43868 TRF Tandem_Repeat 70639 72540 857 + . . scaffold43868 TRF Tandem_Repeat 70934 72399 328 + . . scaffold43868 TRF Tandem_Repeat 71691 72340 394 + . . scaffold43868 TRF Tandem_Repeat 72260 72503 193 + . . scaffold43868 TRF Tandem_Repeat 73948 74026 151 + . . scaffold43868 TRF Tandem_Repeat 86419 86525 115 + . . scaffold43868 WUBlastX LINE_CR1 92178 92219 22 - . . scaffold43868 WUBlastX LINE_CR1-L2 92187 92267 25 - . . scaffold43868 WUBlastX LINE_CR1-L2 92659 93060 52 - . . scaffold43868 WUBlastX LINE_CR1 92824 93072 56 - . . scaffold43868 WUBlastX LINE_L2 92863 93162 42 - . . scaffold43868 WUBlastX LINE_CR1-L2 92863 93063 65 - . . scaffold43868 WUBlastX LINE_RTE-X 92866 93105 62 - . . scaffold43868 GLEAN promoter 100905 101904 0.999949 + . ID=CGI_10013653; scaffold43868 GLEAN mRNA 101905 112580 0.999949 + . ID=CGI_10013653; scaffold43868 TRF Tandem_Repeat 105664 105701 67 + . . scaffold43868 TRF Tandem_Repeat 106575 106608 68 + . . scaffold43868 GLEAN promoter 117562 118561 0.999607 + . ID=CGI_10013654; scaffold43868 GLEAN mRNA 118562 121051 0.999607 + . ID=CGI_10013654; scaffold43868 TRF Tandem_Repeat 132619 132662 70 + . . scaffold43868 WUBlastX LINE_RTE-BovB 138217 138411 129 - . . scaffold43868 TRF Tandem_Repeat 141498 141711 329 + . . scaffold43868 GLEAN mRNA 146414 148548 0.937811 - . ID=CGI_10013655; scaffold43868 TRF Tandem_Repeat 146630 146682 52 + . . scaffold43868 GLEAN promoter 148549 149548 0.937811 - . ID=CGI_10013655; scaffold43868 WUBlastX LINE_RTE-X 150781 151071 29 - . . scaffold43868 WUBlastX LINE_RTE-X 150865 151107 56 - . . scaffold43868 GLEAN promoter 155077 156076 0.999999 + . ID=CGI_10013656; scaffold43868 GLEAN mRNA 156077 171415 0.999999 + . ID=CGI_10013656; scaffold43868 GLEAN mRNA 175252 195180 0.863227 - . ID=CGI_10013657; scaffold43868 GLEAN promoter 193212 194211 0.99953 + . ID=CGI_10013658; scaffold43868 GLEAN mRNA 194212 197850 0.99953 + . ID=CGI_10013658; scaffold43868 GLEAN promoter 195181 196180 0.863227 - . ID=CGI_10013657; scaffold43868 GLEAN mRNA 200224 201753 0.999586 - . ID=CGI_10013659; scaffold43868 GLEAN promoter 201754 202753 0.999586 - . ID=CGI_10013659; scaffold43868 TRF Tandem_Repeat 203057 203099 77 + . . scaffold43868 GLEAN promoter 203204 204203 0.988981 + . ID=CGI_10013660; scaffold43868 GLEAN mRNA 204204 214047 0.988981 + . ID=CGI_10013660; scaffold43868 TRF Tandem_Repeat 214431 214567 86 + . . scaffold43868 TRF Tandem_Repeat 214448 214567 84 + . . scaffold43868 TRF Tandem_Repeat 216943 216979 74 + . . scaffold43868 TRF Tandem_Repeat 222418 222444 54 + . . scaffold43868 WUBlastX LINE_L2 224763 225173 33 + . . scaffold43868 WUBlastX LINE_L2 224865 225116 42 + . . scaffold43868 WUBlastX LINE_CR1-L2 224913 225119 116 + . . scaffold43868 WUBlastX LINE_CR1-L2 225089 225832 306 + . . scaffold43868 GLEAN promoter 231511 232510 0.495497 + . ID=CGI_10013661; scaffold43868 GLEAN mRNA 232511 239292 0.495497 + . ID=CGI_10013661; scaffold43868 TRF Tandem_Repeat 235125 235189 121 + . . scaffold43868 WUBlastX LINE_RTE-BovB 248674 249060 258 - . . scaffold43868 WUBlastX LINE_RTE-BovB 248677 249204 36 - . . scaffold43868 GLEAN promoter 252147 253146 0.499945 + . ID=CGI_10013662; scaffold43868 GLEAN mRNA 253147 262542 0.499945 + . ID=CGI_10013662; scaffold43868 TRF Tandem_Repeat 256515 256562 96 + . . scaffold43868 TRF Tandem_Repeat 257991 258051 113 + . . scaffold43868 TRF Tandem_Repeat 259419 259456 51 + . . scaffold43868 GLEAN mRNA 264581 265549 0.999983 - . ID=CGI_10013663; scaffold43868 GLEAN promoter 265550 266549 0.999983 - . ID=CGI_10013663; scaffold43868 GLEAN mRNA 266172 267788 0.836238 - . ID=CGI_10013664; scaffold43868 GLEAN promoter 267789 268788 0.836238 - . ID=CGI_10013664; scaffold43868 GLEAN mRNA 268971 272497 1 - . ID=CGI_10013665; scaffold43868 TRF Tandem_Repeat 270954 270981 56 + . . scaffold43868 GLEAN promoter 271203 272202 0.648545 + . ID=CGI_10013666; scaffold43868 GLEAN mRNA 272203 278191 0.648545 + . ID=CGI_10013666; scaffold43868 GLEAN promoter 272498 273497 1 - . ID=CGI_10013665; scaffold43868 GLEAN mRNA 280231 284096 1 - . ID=CGI_10013667; scaffold43868 GLEAN promoter 284097 285096 1 - . ID=CGI_10013667; scaffold43868 GLEAN promoter 314159 315158 0.99909 + . ID=CGI_10013668; scaffold43868 GLEAN mRNA 315159 322216 0.99909 + . ID=CGI_10013668; scaffold43868 TRF Tandem_Repeat 319441 319466 52 + . . scaffold43868 GLEAN mRNA 328945 333509 0.999968 - . ID=CGI_10013669; scaffold43868 GLEAN promoter 333510 334509 0.999968 - . ID=CGI_10013669; scaffold43868 TRF Tandem_Repeat 353114 353209 153 + . . scaffold43868 GLEAN mRNA 354170 355517 0.645124 - . ID=CGI_10013670; scaffold43868 GLEAN promoter 355518 356517 0.645124 - . ID=CGI_10013670; scaffold43868 GLEAN mRNA 359935 362052 0.998401 - . ID=CGI_10013671; scaffold43868 GLEAN promoter 362053 363052 0.998401 - . ID=CGI_10013671; scaffold43868 TRF Tandem_Repeat 362236 362264 58 + . . scaffold43868 TRF Tandem_Repeat 363704 363730 54 + . . scaffold43878 TRF Tandem_Repeat 117 160 61 + . . scaffold43878 TRF Tandem_Repeat 130 163 59 + . . scaffold43878 GLEAN mRNA 19366 41477 0.131804 - . ID=CGI_10013710; scaffold43878 TRF Tandem_Repeat 25651 25877 96 + . . scaffold43878 TRF Tandem_Repeat 25962 26069 55 + . . scaffold43878 WUBlastX LINE_L1-Tx1 33757 33948 24 - . . scaffold43878 WUBlastX LINE_L1-Tx1 34233 34763 137 - . . scaffold43878 TRF Tandem_Repeat 41142 41246 174 + . . scaffold43878 GLEAN promoter 41478 42477 0.131804 - . ID=CGI_10013710; scaffold43878 TRF Tandem_Repeat 53915 53954 80 + . . scaffold43878 GLEAN promoter 62246 63245 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63010 63108 34 + . . scaffold43878 WUBlastX DNA_Kolobok 63062 63214 39 + . . scaffold43878 WUBlastX DNA_Kolobok 63192 63506 111 + . . scaffold43878 WUBlastX DNA_Kolobok 63243 63518 150 + . . scaffold43878 GLEAN mRNA 63246 64902 0.999414 + . ID=CGI_10013712; scaffold43878 WUBlastX DNA_Kolobok 63635 63904 60 + . . scaffold43878 WUBlastX DNA_Kolobok 63994 64176 60 + . . scaffold43878 WUBlastX DNA_Kolobok 64264 64476 27 + . . scaffold43878 WUBlastX DNA_Kolobok 64474 64704 39 + . . scaffold43878 WUBlastX DNA_Kolobok 64978 65148 67 - . . scaffold43878 WUBlastX LINE_RTE-X 66252 66806 164 + . . scaffold43878 WUBlastX LINE_RTE-X 67075 67356 29 + . . scaffold43878 WUBlastX LINE_CR1 67392 67874 117 + . . scaffold43878 WUBlastX LINE_RTE-X 67470 67919 242 + . . scaffold43878 WUBlastX LINE_RTE-X 67885 68319 94 + . . scaffold43878 WUBlastX LINE_RTE-X 69373 69621 68 + . . scaffold43878 WUBlastX LINE_RTE-X 69424 69678 23 + . . scaffold43878 WUBlastX LINE_RTE-X 69662 69931 81 + . . scaffold43878 WUBlastX LINE_RTE-X 69662 69850 93 + . . scaffold43878 WUBlastX LINE_RTE-X 70020 70340 53 + . . scaffold43878 WUBlastX LINE_RTE-X 70023 70451 40 + . . scaffold43878 TRF Tandem_Repeat 71039 71077 64 + . . scaffold43878 WUBlastX LINE_RTE-X 79342 79416 46 - . . scaffold43878 WUBlastX LINE_RTE-X 79363 79464 30 - . . scaffold43878 WUBlastX LINE_RTE-X 79758 79832 37 - . . scaffold43878 GLEAN mRNA 80366 82907 1 - . ID=CGI_10013713; scaffold43878 GLEAN promoter 82908 83907 1 - . ID=CGI_10013713; scaffold43878 GLEAN mRNA 82917 92045 0.99935 - . ID=CGI_10013714; scaffold43878 TRF Tandem_Repeat 84100 84165 87 + . . scaffold43878 GLEAN promoter 92046 93045 0.99935 - . ID=CGI_10013714; scaffold43878 WUBlastX LINE_RTE-X 92746 93096 28 - . . scaffold43878 WUBlastX LINE_RTE-X 92887 93216 29 - . . scaffold43878 WUBlastX LINE_RTE-X 92887 93096 56 - . . scaffold43878 GLEAN promoter 93029 94028 1 + . ID=CGI_10013715; scaffold43878 GLEAN mRNA 94029 94719 1 + . ID=CGI_10013715; scaffold43878 GLEAN mRNA 103883 107410 0.999999 - . ID=CGI_10013716; scaffold43878 GLEAN promoter 107411 108410 0.999999 - . ID=CGI_10013716; scaffold43878 GLEAN promoter 108414 109413 1 + . ID=CGI_10013717; scaffold43878 GLEAN mRNA 109414 110104 1 + . ID=CGI_10013717; scaffold43878 TRF Tandem_Repeat 136807 136857 61 + . . scaffold43878 GLEAN promoter 143572 144571 0.99935 + . ID=CGI_10013718; scaffold43878 GLEAN mRNA 144572 146949 0.99935 + . ID=CGI_10013718; scaffold43878 GLEAN mRNA 151490 151774 1 - . ID=CGI_10013719; scaffold43878 GLEAN promoter 151775 152774 1 - . ID=CGI_10013719; scaffold43878 TRF Tandem_Repeat 153457 153491 70 + . . scaffold43878 TRF Tandem_Repeat 156767 156812 67 + . . scaffold43878 GLEAN promoter 157446 158445 0.593391 + . ID=CGI_10013720; scaffold43878 GLEAN mRNA 158446 163606 0.593391 + . ID=CGI_10013720; scaffold43878 WUBlastX RC_Helitron 159839 160090 51 + . . scaffold43878 WUBlastX RC_Helitron 161026 161112 28 + . . scaffold43878 GLEAN promoter 163633 164632 1 + . ID=CGI_10013721; scaffold43878 GLEAN mRNA 164633 165019 1 + . ID=CGI_10013721; scaffold43878 GLEAN mRNA 169203 176969 1 - . ID=CGI_10013722; scaffold43878 GLEAN promoter 176970 177969 1 - . ID=CGI_10013722; scaffold43878 GLEAN mRNA 204497 208557 0.999676 - . ID=CGI_10013723; scaffold43878 GLEAN promoter 208558 209557 0.999676 - . ID=CGI_10013723; scaffold43878 TRF Tandem_Repeat 210501 210855 323 + . . scaffold43878 TRF Tandem_Repeat 210924 211064 156 + . . scaffold43878 TRF Tandem_Repeat 211149 211235 113 + . . scaffold43878 WUBlastX LINE_L2 212449 212796 87 - . . scaffold43878 WUBlastX LINE_L2 212512 213183 167 - . . scaffold43878 WUBlastX LINE_L2 213034 213228 41 - . . scaffold43878 TRF Tandem_Repeat 227796 227841 85 + . . scaffold43878 TRF Tandem_Repeat 232559 232620 124 + . . scaffold43878 GLEAN mRNA 236921 244910 0.633245 - . ID=CGI_10013724; scaffold43878 TRF Tandem_Repeat 237916 238007 107 + . . scaffold43878 TRF Tandem_Repeat 238087 238222 112 + . . scaffold43878 TRF Tandem_Repeat 238294 238400 117 + . . scaffold43878 TRF Tandem_Repeat 238492 238585 59 + . . scaffold43878 GLEAN promoter 244911 245910 0.633245 - . ID=CGI_10013724; scaffold43878 GLEAN mRNA 245142 245711 0.996199 - . ID=CGI_10013725; scaffold43878 GLEAN promoter 245712 246711 0.996199 - . ID=CGI_10013725; scaffold43878 TRF Tandem_Repeat 247132 247163 55 + . . scaffold43878 TRF Tandem_Repeat 259810 259841 64 + . . scaffold43878 TRF Tandem_Repeat 261154 261185 64 + . . scaffold43878 TRF Tandem_Repeat 263603 263634 64 + . . scaffold43878 GLEAN mRNA 276069 281360 0.999995 - . ID=CGI_10013726; scaffold43878 TRF Tandem_Repeat 281073 281120 96 + . . scaffold43878 GLEAN promoter 281361 282360 0.999995 - . ID=CGI_10013726; scaffold43878 GLEAN mRNA 283494 288057 0.40162 - . ID=CGI_10013727; scaffold43878 GLEAN promoter 288058 289057 0.40162 - . ID=CGI_10013727; scaffold43878 GLEAN promoter 289968 290967 1 + . ID=CGI_10013728; scaffold43878 GLEAN mRNA 290968 292511 1 + . ID=CGI_10013728; scaffold43878 TRF Tandem_Repeat 294096 294129 52 + . . scaffold43878 GLEAN promoter 295118 296117 0.999997 + . ID=CGI_10013729; scaffold43878 GLEAN promoter 296004 297003 1 + . ID=CGI_10013730; scaffold43878 GLEAN mRNA 296118 296828 0.999997 + . ID=CGI_10013729; scaffold43878 GLEAN mRNA 297004 298011 1 + . ID=CGI_10013730; scaffold43878 GLEAN mRNA 300492 307438 1 - . ID=CGI_10013731; scaffold43878 GLEAN promoter 307439 308438 1 - . ID=CGI_10013731; scaffold43878 TRF Tandem_Repeat 308899 308943 90 + . . scaffold43878 TRF Tandem_Repeat 309641 309688 96 + . . scaffold43878 WUBlastX LINE_RTE-X 322456 322734 95 + . . scaffold43878 WUBlastX LINE_RTE-X 322715 322777 20 + . . scaffold43878 WUBlastX LINE_RTE-X 322834 322926 20 + . . scaffold43878 WUBlastX LINE_RTE-X 322849 322944 44 + . . scaffold43878 WUBlastX LINE_RTE-X 322864 323034 39 + . . scaffold43878 GLEAN promoter 330528 331527 0.966874 + . ID=CGI_10013732; scaffold43878 WUBlastX LINE_RTE-X 330735 331040 27 + . . scaffold43878 WUBlastX LINE_RTE-X 330753 331139 20 + . . scaffold43878 GLEAN mRNA 331528 360286 0.966874 + . ID=CGI_10013732; scaffold43878 TRF Tandem_Repeat 335041 335377 570 + . . scaffold43878 TRF Tandem_Repeat 335041 335377 570 + . . scaffold43878 TRF Tandem_Repeat 336113 336147 70 + . . scaffold43878 TRF Tandem_Repeat 351489 351536 51 + . . scaffold43878 TRF Tandem_Repeat 351489 351533 72 + . . scaffold43878 TRF Tandem_Repeat 362557 362596 80 + . . scaffold43894 GLEAN mRNA 947 6078 0.449006 - . ID=CGI_10013873; scaffold43894 GLEAN promoter 6079 7078 0.449006 - . ID=CGI_10013873; scaffold43894 GLEAN promoter 6283 7282 0.540542 + . ID=CGI_10013874; scaffold43894 GLEAN mRNA 7283 22754 0.540542 + . ID=CGI_10013874; scaffold43894 TRF Tandem_Repeat 9919 9950 64 + . . scaffold43894 TRF Tandem_Repeat 12986 13023 58 + . . scaffold43894 TRF Tandem_Repeat 13936 13982 94 + . . scaffold43894 TRF Tandem_Repeat 22841 22898 80 + . . scaffold43894 GLEAN promoter 23201 24200 1 + . ID=CGI_10013875; scaffold43894 GLEAN mRNA 24201 27193 1 + . ID=CGI_10013875; scaffold43894 GLEAN mRNA 28176 29906 0.995804 - . ID=CGI_10013876; scaffold43894 GLEAN promoter 29907 30906 0.995804 - . ID=CGI_10013876; scaffold43894 GLEAN promoter 32992 33991 0.999982 + . ID=CGI_10013877; scaffold43894 GLEAN mRNA 33992 42714 0.999982 + . ID=CGI_10013877; scaffold43894 TRF Tandem_Repeat 35684 35860 214 + . . scaffold43894 TRF Tandem_Repeat 36146 36506 453 + . . scaffold43894 TRF Tandem_Repeat 36146 36515 487 + . . scaffold43894 TRF Tandem_Repeat 36148 36515 387 + . . scaffold43894 TRF Tandem_Repeat 37163 37486 378 + . . scaffold43894 TRF Tandem_Repeat 37163 37486 411 + . . scaffold43894 TRF Tandem_Repeat 37169 37488 334 + . . scaffold43894 TRF Tandem_Repeat 39944 39983 80 + . . scaffold43894 GLEAN mRNA 47889 51822 1 - . ID=CGI_10013878; scaffold43894 GLEAN promoter 51823 52822 1 - . ID=CGI_10013878; scaffold43894 TRF Tandem_Repeat 52749 52813 85 + . . scaffold43894 TRF Tandem_Repeat 53017 53077 122 + . . scaffold43894 TRF Tandem_Repeat 53442 53515 148 + . . scaffold43894 TRF Tandem_Repeat 53760 53843 80 + . . scaffold43894 GLEAN mRNA 54989 68852 0.806373 - . ID=CGI_10013879; scaffold43894 GLEAN promoter 68853 69852 0.806373 - . ID=CGI_10013879; scaffold43894 GLEAN mRNA 70227 79055 0.999682 - . ID=CGI_10013880; scaffold43894 GLEAN promoter 79056 80055 0.999682 - . ID=CGI_10013880; scaffold43894 TRF Tandem_Repeat 79210 79254 76 + . . scaffold43894 TRF Tandem_Repeat 85451 85490 80 + . . scaffold43894 GLEAN promoter 89003 90002 0.999987 + . ID=CGI_10013881; scaffold43894 GLEAN mRNA 90003 104636 0.999987 + . ID=CGI_10013881; scaffold43894 TRF Tandem_Repeat 96329 96375 94 + . . scaffold43894 GLEAN mRNA 105864 106861 0.999661 - . ID=CGI_10013882; scaffold43894 GLEAN promoter 106862 107861 0.999661 - . ID=CGI_10013882; scaffold43894 TRF Tandem_Repeat 106953 106998 92 + . . scaffold43894 WUBlastX LINE_L2 119604 119876 45 + . . scaffold43894 WUBlastX LINE_RTE-X 120126 120446 78 - . . scaffold43894 WUBlastX LINE_RTE-X 120126 120698 44 - . . scaffold43894 WUBlastX LINE_RTE-X 120722 120871 58 - . . scaffold43894 WUBlastX LINE_RTE-X 120731 121171 47 - . . scaffold43894 WUBlastX LINE_RTE-X 121132 121551 46 - . . scaffold43894 WUBlastX LINE_RTE-X 121234 121440 46 - . . scaffold43894 WUBlastX LINE_RTE-BovB 121568 121795 40 - . . scaffold43894 WUBlastX LINE_RTE-X 121592 121783 87 - . . scaffold43894 TRF Tandem_Repeat 123921 124012 112 + . . scaffold43894 TRF Tandem_Repeat 124089 124251 204 + . . scaffold43894 TRF Tandem_Repeat 124465 124558 100 + . . scaffold43894 TRF Tandem_Repeat 135909 136524 231 + . . scaffold43894 TRF Tandem_Repeat 136128 136526 355 + . . scaffold43894 GLEAN promoter 149843 150842 0.666532 + . ID=CGI_10013883; scaffold43894 GLEAN mRNA 150843 168224 0.666532 + . ID=CGI_10013883; scaffold43894 TRF Tandem_Repeat 152184 152214 62 + . . scaffold43894 TRF Tandem_Repeat 170274 170325 104 + . . scaffold43894 TRF Tandem_Repeat 173411 173435 50 + . . scaffold43894 TRF Tandem_Repeat 175049 175094 83 + . . scaffold43894 TRF Tandem_Repeat 182648 182686 60 + . . scaffold43894 GLEAN mRNA 189218 189421 0.999372 - . ID=CGI_10013884; scaffold43894 GLEAN promoter 189422 190421 0.999372 - . ID=CGI_10013884; scaffold43894 GLEAN mRNA 189680 189871 0.999372 - . ID=CGI_10013885; scaffold43894 GLEAN promoter 189872 190871 0.999372 - . ID=CGI_10013885; scaffold43894 GLEAN promoter 204010 205009 0.493011 + . ID=CGI_10013886; scaffold43894 GLEAN mRNA 205010 220051 0.493011 + . ID=CGI_10013886; scaffold43894 TRF Tandem_Repeat 214178 214227 100 + . . scaffold43894 GLEAN mRNA 220844 223161 1 - . ID=CGI_10013887; scaffold43894 GLEAN promoter 223162 224161 1 - . ID=CGI_10013887; scaffold43894 GLEAN mRNA 223387 227363 0.997651 - . ID=CGI_10013888; scaffold43894 TRF Tandem_Repeat 223536 223565 60 + . . scaffold43894 GLEAN promoter 227364 228363 0.997651 - . ID=CGI_10013888; scaffold43894 GLEAN mRNA 227803 230890 1 - . ID=CGI_10013889; scaffold43894 GLEAN promoter 230891 231890 1 - . ID=CGI_10013889; scaffold43894 GLEAN mRNA 231157 240785 0.925814 - . ID=CGI_10013890; scaffold43894 GLEAN promoter 240786 241785 0.925814 - . ID=CGI_10013890; scaffold43894 TRF Tandem_Repeat 248760 248810 84 + . . scaffold43894 GLEAN mRNA 249568 251398 0.99996 - . ID=CGI_10013891; scaffold43894 GLEAN promoter 251399 252398 0.99996 - . ID=CGI_10013891; scaffold43894 TRF Tandem_Repeat 253293 253317 50 + . . scaffold43894 TRF Tandem_Repeat 253317 253379 126 + . . scaffold43894 WUBlastX LTR_Pao 254555 255190 79 + . . scaffold43894 WUBlastX LTR_Pao 254834 257161 1059 + . . scaffold43894 WUBlastX LTR_Pao 255278 257161 1131 + . . scaffold43894 WUBlastX LTR_Pao 257113 257853 700 + . . scaffold43894 WUBlastX LTR_Pao 257668 257901 20 + . . scaffold43894 TRF Tandem_Repeat 263920 263965 92 + . . scaffold43894 GLEAN mRNA 264402 278141 0.811559 - . ID=CGI_10013892; scaffold43894 TRF Tandem_Repeat 267324 267412 133 + . . scaffold43894 TRF Tandem_Repeat 267325 267412 113 + . . scaffold43894 WUBlastX LINE_RTE-X 268229 268855 115 + . . scaffold43894 TRF Tandem_Repeat 269170 269283 201 + . . scaffold43894 TRF Tandem_Repeat 271470 271506 74 + . . scaffold43894 TRF Tandem_Repeat 271705 271745 64 + . . scaffold43894 TRF Tandem_Repeat 271743 271780 76 + . . scaffold43894 TRF Tandem_Repeat 272271 272330 75 + . . scaffold43894 GLEAN promoter 278142 279141 0.811559 - . ID=CGI_10013892; scaffold43894 WUBlastX LINE_Penelope 287140 287733 99 - . . scaffold43894 GLEAN promoter 290363 291362 0.573337 + . ID=CGI_10013893; scaffold43894 GLEAN mRNA 291363 293129 0.573337 + . ID=CGI_10013893; scaffold43894 TRF Tandem_Repeat 293818 293873 105 + . . scaffold43894 TRF Tandem_Repeat 312130 312179 91 + . . scaffold43894 TRF Tandem_Repeat 316747 316814 82 + . . scaffold43894 GLEAN promoter 320019 321018 0.997806 + . ID=CGI_10013894; scaffold43894 GLEAN mRNA 321019 321303 0.997806 + . ID=CGI_10013894; scaffold43894 WUBlastX LINE_L2 321094 321300 44 + . . scaffold43894 WUBlastX LINE_L2 321296 321484 35 + . . scaffold43894 WUBlastX DNA_Academ 324156 324431 124 + . . scaffold43894 WUBlastX DNA_Academ 324455 324532 34 + . . scaffold43894 TRF Tandem_Repeat 324860 324966 124 + . . scaffold43894 TRF Tandem_Repeat 325359 325406 96 + . . scaffold43894 TRF Tandem_Repeat 335935 336676 930 + . . scaffold43894 TRF Tandem_Repeat 370287 370349 119 + . . scaffold439 TRF Tandem_Repeat 9671 9721 63 + . . scaffold439 TRF Tandem_Repeat 20040 20065 52 + . . scaffold439 WUBlastX LTR_Gypsy 31133 32188 187 - . . scaffold439 WUBlastX LTR_Gypsy 31325 35101 3204 - . . scaffold439 TRF Tandem_Repeat 40544 40609 123 + . . scaffold43920 TRF Tandem_Repeat 62 89 56 + . . scaffold43920 WUBlastX LTR_Pao 5132 5452 150 - . . scaffold43920 WUBlastX LTR_Pao 5183 5497 179 - . . scaffold43920 WUBlastX LTR_Pao 5186 5452 252 - . . scaffold43920 TRF Tandem_Repeat 15004 15071 100 + . . scaffold43920 TRF Tandem_Repeat 15004 15077 76 + . . scaffold43920 GLEAN promoter 43281 44280 0.726327 + . ID=CGI_10013987; scaffold43920 TRF Tandem_Repeat 43438 43477 80 + . . scaffold43920 GLEAN mRNA 44281 62633 0.726327 + . ID=CGI_10013987; scaffold43920 TRF Tandem_Repeat 53671 53714 88 + . . scaffold43920 WUBlastX LINE_CR1 55916 56587 196 + . . scaffold43920 WUBlastX LINE_L1-Tx1 57397 60831 1130 + . . scaffold43920 GLEAN mRNA 65959 67028 0.999791 - . ID=CGI_10013988; scaffold43920 GLEAN promoter 67029 68028 0.999791 - . ID=CGI_10013988; scaffold43920 WUBlastX LTR_Gypsy-Cigr 68831 69166 21 + . . scaffold43920 WUBlastX LTR_Gypsy 68933 69163 29 + . . scaffold43920 WUBlastX LTR_Gypsy 69227 69622 77 + . . scaffold43920 WUBlastX LTR_Gypsy 69230 69556 103 + . . scaffold43920 GLEAN mRNA 72997 78831 0.970691 - . ID=CGI_10013989; scaffold43920 GLEAN promoter 78832 79831 0.970691 - . ID=CGI_10013989; scaffold43920 GLEAN promoter 80909 81908 1 + . ID=CGI_10013990; scaffold43920 GLEAN mRNA 81909 85457 1 + . ID=CGI_10013990; scaffold43920 GLEAN mRNA 87156 124802 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 103014 103696 981 + . . scaffold43920 TRF Tandem_Repeat 103870 103896 54 + . . scaffold43920 TRF Tandem_Repeat 105234 105541 415 + . . scaffold43920 TRF Tandem_Repeat 114629 115226 781 + . . scaffold43920 TRF Tandem_Repeat 114629 115236 733 + . . scaffold43920 TRF Tandem_Repeat 115064 115188 85 + . . scaffold43920 TRF Tandem_Repeat 116069 116354 146 + . . scaffold43920 GLEAN promoter 124803 125802 0.987298 - . ID=CGI_10013991; scaffold43920 TRF Tandem_Repeat 130989 131022 50 + . . scaffold43920 GLEAN promoter 153537 154536 0.5932 + . ID=CGI_10013992; scaffold43920 GLEAN mRNA 154537 156242 0.5932 + . ID=CGI_10013992; scaffold43920 TRF Tandem_Repeat 165289 165337 98 + . . scaffold43920 TRF Tandem_Repeat 165771 165827 114 + . . scaffold43920 GLEAN promoter 170139 171138 1 + . ID=CGI_10013993; scaffold43920 GLEAN mRNA 171139 174142 1 + . ID=CGI_10013993; scaffold43920 GLEAN promoter 173629 174628 0.493317 + . ID=CGI_10013994; scaffold43920 GLEAN mRNA 174629 203515 0.493317 + . ID=CGI_10013994; scaffold43920 TRF Tandem_Repeat 175545 176639 1124 + . . scaffold43920 WUBlastX LINE_L1-Tx1 183485 183775 140 - . . scaffold43920 WUBlastX LINE_L1-Tx1 183772 184209 173 - . . scaffold43920 TRF Tandem_Repeat 185242 185287 92 + . . scaffold43920 TRF Tandem_Repeat 186286 186329 63 + . . scaffold43920 TRF Tandem_Repeat 197016 197122 115 + . . scaffold43920 TRF Tandem_Repeat 197448 197721 107 + . . scaffold43920 TRF Tandem_Repeat 197450 197591 85 + . . scaffold43920 TRF Tandem_Repeat 197618 197725 126 + . . scaffold43920 TRF Tandem_Repeat 199432 199536 70 + . . scaffold43920 TRF Tandem_Repeat 207523 207589 89 + . . scaffold43920 WUBlastX DNA_TcMar-Tc1 210308 210565 64 - . . scaffold43920 WUBlastX DNA_TcMar-Marin 211520 211924 229 - . . scaffold43920 WUBlastX DNA_TcMar-Marin 212113 212490 186 - . . scaffold43920 WUBlastX DNA_TcMar-Marin 212393 212773 162 - . . scaffold43920 TRF Tandem_Repeat 242431 242465 70 + . . scaffold43920 TRF Tandem_Repeat 244097 244136 62 + . . scaffold43920 TRF Tandem_Repeat 248340 248365 52 + . . scaffold43920 WUBlastX DNA_TcMar-Fot1 248945 250468 571 - . . scaffold43920 WUBlastX DNA_TcMar-Fot1 249521 250480 575 - . . scaffold43920 WUBlastX DNA_TcMar-Fot1 250489 250791 140 - . . scaffold43920 GLEAN promoter 252407 253406 0.999991 + . ID=CGI_10013995; scaffold43920 GLEAN mRNA 253407 262803 0.999991 + . ID=CGI_10013995; scaffold43920 WUBlastX DNA_TcMar-Tc1 260886 261035 56 + . . scaffold43920 WUBlastX DNA_TcMar-Tc1 261043 261372 34 + . . scaffold43920 WUBlastX DNA_TcMar-Tc1 261046 261288 36 + . . scaffold43920 WUBlastX LTR_Gypsy 270055 270486 233 + . . scaffold43920 TRF Tandem_Repeat 272024 272961 1475 + . . scaffold43920 GLEAN promoter 275262 276261 0.98199 + . ID=CGI_10013996; scaffold43920 GLEAN mRNA 276262 283859 0.98199 + . ID=CGI_10013996; scaffold43920 GLEAN promoter 285315 286314 0.981696 + . ID=CGI_10013997; scaffold43920 GLEAN mRNA 286315 293610 0.981696 + . ID=CGI_10013997; scaffold43920 TRF Tandem_Repeat 287307 288014 1220 + . . scaffold43920 TRF Tandem_Repeat 288020 288053 59 + . . scaffold43920 TRF Tandem_Repeat 288023 288066 61 + . . scaffold43920 WUBlastX LTR_Gypsy 295419 295559 21 - . . scaffold43920 WUBlastX LTR_Gypsy 295431 295523 22 - . . scaffold43920 WUBlastX LTR_Gypsy 295693 297660 740 - . . scaffold43920 WUBlastX LTR_Gypsy 295693 297288 1095 - . . scaffold43920 WUBlastX LTR_Gypsy 297286 299151 349 - . . scaffold43920 WUBlastX LTR_Gypsy 298495 299382 125 - . . scaffold43920 TRF Tandem_Repeat 300010 300189 78 + . . scaffold43920 GLEAN promoter 300272 301271 0.985601 + . ID=CGI_10013998; scaffold43920 GLEAN mRNA 301272 308189 0.985601 + . ID=CGI_10013998; scaffold43920 TRF Tandem_Repeat 302995 303039 90 + . . scaffold43920 WUBlastX DNA_MuDR 307722 308309 44 + . . scaffold43920 WUBlastX DNA_MuDR 307962 308426 66 + . . scaffold43920 WUBlastX DNA_MuDR 308211 308510 29 + . . scaffold43920 GLEAN promoter 308875 309874 0.642175 + . ID=CGI_10013999; scaffold43920 GLEAN mRNA 309875 322859 0.642175 + . ID=CGI_10013999; scaffold43920 WUBlastX DNA_Harbinger 319512 319862 73 + . . scaffold43920 GLEAN mRNA 326902 340720 1 - . ID=CGI_10014000; scaffold43920 WUBlastX LINE_L1-Tx1 329080 329304 50 - . . scaffold43920 WUBlastX LINE_L1-Tx1 329323 329676 145 - . . scaffold43920 WUBlastX LINE_L1-Tx1 329600 330397 463 - . . scaffold43920 WUBlastX LINE_L1 329678 330535 207 - . . scaffold43920 GLEAN promoter 340721 341720 1 - . ID=CGI_10014000; scaffold43920 GLEAN mRNA 342007 379534 0.562069 - . ID=CGI_10014001; scaffold43920 WUBlastX DNA_Kolobok 346880 347080 65 - . . scaffold43920 WUBlastX DNA_Kolobok 346880 347167 50 - . . scaffold43920 WUBlastX DNA_Kolobok 346883 347041 79 - . . scaffold43920 WUBlastX DNA_Kolobok 347351 347539 50 - . . scaffold43920 TRF Tandem_Repeat 354017 354172 140 + . . scaffold43920 WUBlastX LINE_RTE-X 357959 358171 70 - . . scaffold43920 WUBlastX LINE_RTE-X 357992 358171 84 - . . scaffold43920 TRF Tandem_Repeat 362303 362347 54 + . . scaffold43920 TRF Tandem_Repeat 365537 365590 108 + . . scaffold43920 TRF Tandem_Repeat 367177 367207 62 + . . scaffold43920 GLEAN promoter 379535 380534 0.562069 - . ID=CGI_10014001; scaffold43932 TRF Tandem_Repeat 3623 3657 70 + . . scaffold43932 TRF Tandem_Repeat 7909 7964 112 + . . scaffold43932 TRF Tandem_Repeat 9999 10055 114 + . . scaffold43932 TRF Tandem_Repeat 21199 21261 126 + . . scaffold43932 TRF Tandem_Repeat 22849 22906 116 + . . scaffold43932 GLEAN promoter 30025 31024 0.998254 + . ID=CGI_10014106; scaffold43932 TRF Tandem_Repeat 30522 30615 107 + . . scaffold43932 TRF Tandem_Repeat 30662 30750 119 + . . scaffold43932 GLEAN mRNA 31025 31408 0.998254 + . ID=CGI_10014106; scaffold43932 TRF Tandem_Repeat 34260 34314 56 + . . scaffold43932 TRF Tandem_Repeat 34367 34395 58 + . . scaffold43932 TRF Tandem_Repeat 35720 35813 82 + . . scaffold43932 TRF Tandem_Repeat 36298 36337 80 + . . scaffold43932 GLEAN promoter 36658 37657 0.592357 + . ID=CGI_10014107; scaffold43932 GLEAN mRNA 37658 45249 0.592357 + . ID=CGI_10014107; scaffold43932 GLEAN promoter 44266 45265 0.999897 + . ID=CGI_10014108; scaffold43932 GLEAN mRNA 45266 59699 0.999897 + . ID=CGI_10014108; scaffold43932 TRF Tandem_Repeat 50928 51365 398 + . . scaffold43932 TRF Tandem_Repeat 52615 52775 250 + . . scaffold43932 GLEAN promoter 62068 63067 0.999674 + . ID=CGI_10014109; scaffold43932 GLEAN mRNA 63068 77486 0.999674 + . ID=CGI_10014109; scaffold43932 TRF Tandem_Repeat 67022 67065 72 + . . scaffold43932 TRF Tandem_Repeat 67111 67893 902 + . . scaffold43932 TRF Tandem_Repeat 68852 68998 73 + . . scaffold43932 TRF Tandem_Repeat 68914 69043 93 + . . scaffold43932 GLEAN promoter 76692 77691 0.999991 + . ID=CGI_10014110; scaffold43932 GLEAN mRNA 77692 84984 0.999991 + . ID=CGI_10014110; scaffold43932 WUBlastX LINE_L2 78105 78320 22 + . . scaffold43932 WUBlastX LINE_L2 78335 78634 68 + . . scaffold43932 GLEAN mRNA 82867 84249 0.648556 - . ID=CGI_10014111; scaffold43932 GLEAN promoter 84250 85249 0.648556 - . ID=CGI_10014111; scaffold43932 WUBlastX LTR_DIRS 101937 102167 88 - . . scaffold43932 GLEAN promoter 102898 103897 1 + . ID=CGI_10014112; scaffold43932 GLEAN mRNA 103898 107632 1 + . ID=CGI_10014112; scaffold43932 GLEAN mRNA 109334 113129 0.989218 - . ID=CGI_10014113; scaffold43932 GLEAN promoter 113130 114129 0.989218 - . ID=CGI_10014113; scaffold43932 TRF Tandem_Repeat 115442 115485 88 + . . scaffold43932 GLEAN mRNA 117175 119337 0.820095 - . ID=CGI_10014114; scaffold43932 GLEAN promoter 119338 120337 0.820095 - . ID=CGI_10014114; scaffold43932 GLEAN mRNA 120334 124296 0.889923 - . ID=CGI_10014115; scaffold43932 GLEAN promoter 124297 125296 0.889923 - . ID=CGI_10014115; scaffold43932 TRF Tandem_Repeat 125760 125801 75 + . . scaffold43932 GLEAN promoter 127178 128177 1 + . ID=CGI_10014116; scaffold43932 GLEAN mRNA 128178 131066 1 + . ID=CGI_10014116; scaffold43932 TRF Tandem_Repeat 131209 131265 91 + . . scaffold43932 WUBlastX LTR_Gypsy 132420 132476 22 - . . scaffold43932 WUBlastX LTR_Gypsy 132884 133690 571 - . . scaffold43932 WUBlastX LTR_Copia 133265 133810 45 - . . scaffold43932 GLEAN mRNA 135782 144938 0.999999 - . ID=CGI_10014117; scaffold43932 TRF Tandem_Repeat 140910 141437 648 + . . scaffold43932 TRF Tandem_Repeat 143744 143768 50 + . . scaffold43932 GLEAN promoter 144939 145938 0.999999 - . ID=CGI_10014117; scaffold43932 TRF Tandem_Repeat 146600 146838 334 + . . scaffold43932 GLEAN promoter 147931 148930 0.999607 + . ID=CGI_10014118; scaffold43932 TRF Tandem_Repeat 148659 148683 50 + . . scaffold43932 GLEAN mRNA 148931 157899 0.999607 + . ID=CGI_10014118; scaffold43932 TRF Tandem_Repeat 149429 149636 362 + . . scaffold43932 TRF Tandem_Repeat 149450 149615 149 + . . scaffold43932 TRF Tandem_Repeat 150273 150465 165 + . . scaffold43932 TRF Tandem_Repeat 150273 150529 264 + . . scaffold43932 GLEAN promoter 158178 159177 0.999698 + . ID=CGI_10014119; scaffold43932 GLEAN mRNA 159178 161885 0.999698 + . ID=CGI_10014119; scaffold43932 TRF Tandem_Repeat 165859 165884 52 + . . scaffold43932 GLEAN mRNA 166533 169401 1 - . ID=CGI_10014120; scaffold43932 GLEAN promoter 169402 170401 1 - . ID=CGI_10014120; scaffold43932 GLEAN mRNA 170519 174774 1 - . ID=CGI_10014121; scaffold43932 GLEAN promoter 174775 175774 1 - . ID=CGI_10014121; scaffold43932 TRF Tandem_Repeat 175524 175572 89 + . . scaffold43932 TRF Tandem_Repeat 177323 177736 517 + . . scaffold43932 WUBlastX LINE_RTE-X 178351 178890 29 + . . scaffold43932 WUBlastX LINE_RTE-X 178489 179034 139 + . . scaffold43932 GLEAN promoter 183217 184216 0.993526 + . ID=CGI_10014122; scaffold43932 GLEAN mRNA 184217 200506 0.993526 + . ID=CGI_10014122; scaffold43932 WUBlastX DNA_Crypton 187304 188233 225 + . . scaffold43932 WUBlastX DNA_TcMar-Tc2 190890 191042 64 + . . scaffold43932 WUBlastX DNA_TcMar-Tc2 191409 192149 132 + . . scaffold43932 WUBlastX DNA_TcMar-Tc2 192630 192917 40 + . . scaffold43932 GLEAN mRNA 201068 222920 0.492745 - . ID=CGI_10014123; scaffold43932 GLEAN promoter 222921 223920 0.492745 - . ID=CGI_10014123; scaffold43932 GLEAN mRNA 228927 270310 0.999351 - . ID=CGI_10014124; scaffold43932 TRF Tandem_Repeat 234126 234315 199 + . . scaffold43932 TRF Tandem_Repeat 256387 256426 80 + . . scaffold43932 TRF Tandem_Repeat 267150 267583 382 + . . scaffold43932 TRF Tandem_Repeat 269138 269174 74 + . . scaffold43932 GLEAN promoter 270311 271310 0.999351 - . ID=CGI_10014124; scaffold43932 TRF Tandem_Repeat 271201 271270 140 + . . scaffold43932 GLEAN promoter 273320 274319 0.889242 + . ID=CGI_10014125; scaffold43932 GLEAN mRNA 274320 284817 0.889242 + . ID=CGI_10014125; scaffold43932 GLEAN promoter 301308 302307 0.99992 + . ID=CGI_10014126; scaffold43932 GLEAN mRNA 302308 316124 0.99992 + . ID=CGI_10014126; scaffold43932 WUBlastX LTR_Gypsy 313620 313973 21 + . . scaffold43932 GLEAN promoter 318947 319946 0.999676 + . ID=CGI_10014127; scaffold43932 GLEAN mRNA 319947 322396 0.999676 + . ID=CGI_10014127; scaffold43932 WUBlastX LTR_DIRS 326300 326362 33 - . . scaffold43932 WUBlastX LTR_DIRS 326462 326581 28 - . . scaffold43932 WUBlastX LINE_R2-Hero 327920 328057 72 - . . scaffold43932 WUBlastX LINE_R2-Hero 328062 328712 131 - . . scaffold43932 WUBlastX LINE_R2-Hero 328224 328709 268 - . . scaffold43932 WUBlastX LINE_R2-Hero 328736 328873 90 - . . scaffold43932 WUBlastX LINE_R2-Hero 328876 329568 143 - . . scaffold43932 WUBlastX LINE_R2-Hero 329550 329630 40 - . . scaffold43932 WUBlastX LINE_R2-Hero 330217 330366 66 - . . scaffold43932 WUBlastX LINE_R2-Hero 330365 330598 111 - . . scaffold43932 WUBlastX LINE_R2-Hero 330365 330739 94 - . . scaffold43932 WUBlastX LINE_R2-Hero 330712 330891 28 - . . scaffold43932 GLEAN mRNA 331981 335153 0.991247 - . ID=CGI_10014128; scaffold43932 GLEAN promoter 335154 336153 0.991247 - . ID=CGI_10014128; scaffold43932 GLEAN promoter 335469 336468 0.999946 + . ID=CGI_10014129; scaffold43932 TRF Tandem_Repeat 335755 336421 1235 + . . scaffold43932 GLEAN mRNA 336469 346110 0.999946 + . ID=CGI_10014129; scaffold43932 TRF Tandem_Repeat 337356 337404 62 + . . scaffold43932 GLEAN mRNA 347779 351684 0.997381 - . ID=CGI_10014130; scaffold43932 GLEAN promoter 351685 352684 0.997381 - . ID=CGI_10014130; scaffold43932 TRF Tandem_Repeat 354214 354253 53 + . . scaffold43932 TRF Tandem_Repeat 355019 355081 119 + . . scaffold43932 GLEAN mRNA 361197 374116 0.888376 - . ID=CGI_10014131; scaffold43932 TRF Tandem_Repeat 361520 361559 80 + . . scaffold43932 WUBlastX DNA_En-Spm 366187 368007 808 - . . scaffold43932 WUBlastX DNA_En-Spm 366445 367881 855 - . . scaffold43932 TRF Tandem_Repeat 373050 373181 74 + . . scaffold43932 GLEAN promoter 374117 375116 0.888376 - . ID=CGI_10014131; scaffold43932 TRF Tandem_Repeat 376875 376928 56 + . . scaffold43932 WUBlastX LINE_RTE-X 383093 383911 315 - . . scaffold43940 GLEAN promoter 1 636 1 + . ID=CGI_10014146; scaffold43940 GLEAN mRNA 637 4729 1 + . ID=CGI_10014146; scaffold43940 GLEAN mRNA 7735 18339 1 - . ID=CGI_10014147; scaffold43940 TRF Tandem_Repeat 8825 8889 112 + . . scaffold43940 GLEAN promoter 8845 9844 0.999931 + . ID=CGI_10014148; scaffold43940 GLEAN mRNA 9845 38128 0.999931 + . ID=CGI_10014148; scaffold43940 GLEAN promoter 18340 19339 1 - . ID=CGI_10014147; scaffold43940 TRF Tandem_Repeat 24346 24703 467 + . . scaffold43940 TRF Tandem_Repeat 24346 24703 420 + . . scaffold43940 GLEAN mRNA 30765 32516 0.999661 - . ID=CGI_10014149; scaffold43940 GLEAN promoter 32517 33516 0.999661 - . ID=CGI_10014149; scaffold43940 TRF Tandem_Repeat 39091 39308 330 + . . scaffold43940 WUBlastX LINE_RTE-X 41748 42251 177 + . . scaffold43940 WUBlastX LINE_RTE-X 41838 42251 222 + . . scaffold43940 WUBlastX LINE_RTE-X 42494 43444 127 + . . scaffold43940 GLEAN promoter 64972 65971 0.808068 + . ID=CGI_10014150; scaffold43940 GLEAN mRNA 65972 85108 0.808068 + . ID=CGI_10014150; scaffold43940 TRF Tandem_Repeat 71564 72142 600 + . . scaffold43940 TRF Tandem_Repeat 73387 74730 2460 + . . scaffold43940 TRF Tandem_Repeat 75452 76443 804 + . . scaffold43940 TRF Tandem_Repeat 75452 75843 649 + . . scaffold43940 TRF Tandem_Repeat 75938 76443 739 + . . scaffold43940 WUBlastX RC_Helitron 79103 79426 34 - . . scaffold43940 TRF Tandem_Repeat 87012 87311 353 + . . scaffold43940 TRF Tandem_Repeat 87012 87311 299 + . . scaffold43940 GLEAN mRNA 89575 95906 0.70503 - . ID=CGI_10014151; scaffold43940 GLEAN promoter 95907 96906 0.70503 - . ID=CGI_10014151; scaffold43940 GLEAN promoter 101790 102789 0.996749 + . ID=CGI_10014152; scaffold43940 GLEAN mRNA 102790 109135 0.996749 + . ID=CGI_10014152; scaffold43940 TRF Tandem_Repeat 104254 104388 225 + . . scaffold43940 TRF Tandem_Repeat 106775 107281 538 + . . scaffold43940 TRF Tandem_Repeat 106798 107262 623 + . . scaffold43940 TRF Tandem_Repeat 108652 108907 415 + . . scaffold43940 TRF Tandem_Repeat 113362 113670 156 + . . scaffold43940 GLEAN mRNA 118695 137139 0.999673 - . ID=CGI_10014153; scaffold43940 TRF Tandem_Repeat 132573 132633 95 + . . scaffold43940 GLEAN promoter 137140 138139 0.999673 - . ID=CGI_10014153; scaffold43940 TRF Tandem_Repeat 137158 137291 178 + . . scaffold43940 GLEAN mRNA 137388 140766 0.248219 - . ID=CGI_10014154; scaffold43940 GLEAN promoter 140767 141766 0.248219 - . ID=CGI_10014154; scaffold43940 TRF Tandem_Repeat 143277 143354 67 + . . scaffold43940 TRF Tandem_Repeat 152914 153017 92 + . . scaffold43940 TRF Tandem_Repeat 154170 154274 94 + . . scaffold43940 TRF Tandem_Repeat 155953 156076 68 + . . scaffold43940 TRF Tandem_Repeat 155953 156072 240 + . . scaffold43940 TRF Tandem_Repeat 155956 156077 112 + . . scaffold43940 GLEAN mRNA 156386 160633 0.581466 - . ID=CGI_10014155; scaffold43940 GLEAN promoter 160634 161633 0.581466 - . ID=CGI_10014155; scaffold43940 GLEAN mRNA 162431 167329 0.420383 - . ID=CGI_10014156; scaffold43940 GLEAN promoter 167330 168329 0.420383 - . ID=CGI_10014156; scaffold43940 TRF Tandem_Repeat 167334 167577 201 + . . scaffold43940 TRF Tandem_Repeat 168349 168779 243 + . . scaffold43940 TRF Tandem_Repeat 168422 168964 725 + . . scaffold43940 TRF Tandem_Repeat 168520 168734 286 + . . scaffold43940 TRF Tandem_Repeat 168616 168964 333 + . . scaffold43940 TRF Tandem_Repeat 187500 187548 98 + . . scaffold43940 TRF Tandem_Repeat 189841 191325 1922 + . . scaffold43940 TRF Tandem_Repeat 192961 192997 74 + . . scaffold43940 GLEAN promoter 193355 194354 0.828976 + . ID=CGI_10014157; scaffold43940 GLEAN mRNA 194355 197655 0.828976 + . ID=CGI_10014157; scaffold43940 TRF Tandem_Repeat 205303 205848 724 + . . scaffold43940 GLEAN mRNA 206270 255803 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 207093 207274 283 + . . scaffold43940 TRF Tandem_Repeat 209962 210118 133 + . . scaffold43940 TRF Tandem_Repeat 219604 220050 779 + . . scaffold43940 TRF Tandem_Repeat 220639 221054 388 + . . scaffold43940 TRF Tandem_Repeat 226327 226991 927 + . . scaffold43940 TRF Tandem_Repeat 228390 228588 150 + . . scaffold43940 TRF Tandem_Repeat 230204 231342 1751 + . . scaffold43940 TRF Tandem_Repeat 232812 233045 445 + . . scaffold43940 TRF Tandem_Repeat 242062 242478 613 + . . scaffold43940 TRF Tandem_Repeat 242561 243106 806 + . . scaffold43940 TRF Tandem_Repeat 245734 245826 132 + . . scaffold43940 GLEAN promoter 255804 256803 0.17425 - . ID=CGI_10014158; scaffold43940 TRF Tandem_Repeat 259976 260445 904 + . . scaffold43940 WUBlastX LINE_RTE-X 266858 267118 80 + . . scaffold43940 WUBlastX LINE_RTE-X 266903 267244 94 + . . scaffold43940 WUBlastX LINE_RTE-X 266906 267121 96 + . . scaffold43940 GLEAN mRNA 272222 295469 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 272853 272884 64 + . . scaffold43940 TRF Tandem_Repeat 274123 274168 92 + . . scaffold43940 TRF Tandem_Repeat 274656 274731 152 + . . scaffold43940 TRF Tandem_Repeat 279813 279849 65 + . . scaffold43940 TRF Tandem_Repeat 280700 280744 90 + . . scaffold43940 TRF Tandem_Repeat 282241 282275 70 + . . scaffold43940 GLEAN promoter 282550 283549 0.753918 + . ID=CGI_10014160; scaffold43940 GLEAN mRNA 283550 295190 0.753918 + . ID=CGI_10014160; scaffold43940 TRF Tandem_Repeat 285361 285806 840 + . . scaffold43940 TRF Tandem_Repeat 286183 286623 502 + . . scaffold43940 GLEAN promoter 295470 296469 0.989276 - . ID=CGI_10014159; scaffold43940 TRF Tandem_Repeat 297569 298148 660 + . . scaffold43940 GLEAN promoter 298103 299102 0.985282 + . ID=CGI_10014161; scaffold43940 GLEAN mRNA 299103 307092 0.985282 + . ID=CGI_10014161; scaffold43940 WUBlastX LINE_L1-Tx1 299886 299960 33 - . . scaffold43940 WUBlastX LINE_L1-Tx1 300004 300186 47 - . . scaffold43940 TRF Tandem_Repeat 305998 306120 119 + . . scaffold43940 TRF Tandem_Repeat 311387 311778 362 + . . scaffold43940 TRF Tandem_Repeat 311412 311778 310 + . . scaffold43940 TRF Tandem_Repeat 312215 314241 2441 + . . scaffold43940 GLEAN mRNA 320005 345257 1 - . ID=CGI_10014162; scaffold43940 TRF Tandem_Repeat 324047 324172 234 + . . scaffold43940 TRF Tandem_Repeat 327481 327664 359 + . . scaffold43940 TRF Tandem_Repeat 328159 328330 274 + . . scaffold43940 TRF Tandem_Repeat 328336 328510 149 + . . scaffold43940 WUBlastX LINE_RTE-X 334827 334925 43 - . . scaffold43940 WUBlastX LINE_RTE-X 334984 335250 49 - . . scaffold43940 TRF Tandem_Repeat 344259 344321 126 + . . scaffold43940 GLEAN promoter 345258 346257 1 - . ID=CGI_10014162; scaffold43940 TRF Tandem_Repeat 352020 352051 55 + . . scaffold43940 TRF Tandem_Repeat 359282 359493 307 + . . scaffold43940 TRF Tandem_Repeat 359282 359493 307 + . . scaffold43940 GLEAN mRNA 370452 373955 1 - . ID=CGI_10014163; scaffold43940 GLEAN promoter 373956 374955 1 - . ID=CGI_10014163; scaffold43940 WUBlastX LINE_RTE-X 378644 378913 95 + . . scaffold43940 WUBlastX DNA_TcMar-Marin 384343 384675 79 - . . scaffold43940 WUBlastX DNA_TcMar-Marin 384343 384621 153 - . . scaffold43940 WUBlastX DNA_TcMar-Marin 385058 385207 39 - . . scaffold43940 WUBlastX DNA_TcMar-Marin 385082 385225 68 - . . scaffold43940 WUBlastX DNA_TcMar-Marin 385088 385288 51 - . . scaffold43940 WUBlastX DNA_TcMar-Marin 385424 386044 325 - . . scaffold43940 WUBlastX DNA_TcMar-Marin 386017 386082 24 - . . scaffold43940 GLEAN promoter 387708 388707 1 + . ID=CGI_10014164; scaffold43940 WUBlastX LTR_Gypsy 388552 388683 26 + . . scaffold43940 GLEAN mRNA 388708 390156 1 + . ID=CGI_10014164; scaffold43954 GLEAN promoter 430 1429 0.999949 + . ID=CGI_10014568; scaffold43954 GLEAN mRNA 1430 13064 0.999949 + . ID=CGI_10014568; scaffold43954 GLEAN mRNA 14405 24898 0.997634 - . ID=CGI_10014569; scaffold43954 TRF Tandem_Repeat 16860 16923 67 + . . scaffold43954 TRF Tandem_Repeat 16860 16909 73 + . . scaffold43954 TRF Tandem_Repeat 24159 24253 95 + . . scaffold43954 GLEAN promoter 24899 25898 0.997634 - . ID=CGI_10014569; scaffold43954 GLEAN mRNA 35241 57128 0.695406 - . ID=CGI_10014570; scaffold43954 GLEAN promoter 57129 58128 0.695406 - . ID=CGI_10014570; scaffold43954 GLEAN mRNA 57781 77722 0.777693 - . ID=CGI_10014571; scaffold43954 TRF Tandem_Repeat 58915 59296 683 + . . scaffold43954 TRF Tandem_Repeat 63050 63217 212 + . . scaffold43954 TRF Tandem_Repeat 70884 71013 84 + . . scaffold43954 TRF Tandem_Repeat 70929 71075 64 + . . scaffold43954 TRF Tandem_Repeat 72027 72896 1232 + . . scaffold43954 TRF Tandem_Repeat 73034 73071 60 + . . scaffold43954 GLEAN promoter 76996 77995 1 + . ID=CGI_10014572; scaffold43954 GLEAN promoter 77723 78722 0.777693 - . ID=CGI_10014571; scaffold43954 GLEAN mRNA 77996 79572 1 + . ID=CGI_10014572; scaffold43954 GLEAN promoter 81201 82200 1 + . ID=CGI_10014573; scaffold43954 GLEAN mRNA 82201 91023 1 + . ID=CGI_10014573; scaffold43954 GLEAN mRNA 96281 104420 1 - . ID=CGI_10014574; scaffold43954 TRF Tandem_Repeat 101642 101810 311 + . . scaffold43954 GLEAN promoter 104421 105420 1 - . ID=CGI_10014574; scaffold43954 TRF Tandem_Repeat 105885 105930 58 + . . scaffold43954 TRF Tandem_Repeat 109754 109801 96 + . . scaffold43954 GLEAN promoter 122161 123160 0.960284 + . ID=CGI_10014575; scaffold43954 GLEAN mRNA 123161 140060 0.960284 + . ID=CGI_10014575; scaffold43954 GLEAN mRNA 139153 149832 0.999998 - . ID=CGI_10014576; scaffold43954 WUBlastX LINE_CR1 146536 146661 39 + . . scaffold43954 WUBlastX LINE_CR1 146642 146842 40 + . . scaffold43954 WUBlastX LINE_CR1 146684 146836 40 + . . scaffold43954 WUBlastX LINE_CR1 146684 146941 36 + . . scaffold43954 TRF Tandem_Repeat 149535 149647 72 + . . scaffold43954 TRF Tandem_Repeat 149552 149654 99 + . . scaffold43954 GLEAN promoter 149833 150832 0.999998 - . ID=CGI_10014576; scaffold43954 GLEAN promoter 151952 152951 1 + . ID=CGI_10014577; scaffold43954 GLEAN mRNA 152952 162644 1 + . ID=CGI_10014577; scaffold43954 GLEAN mRNA 164629 166876 1 - . ID=CGI_10014578; scaffold43954 GLEAN promoter 166213 167212 1 + . ID=CGI_10014579; scaffold43954 GLEAN promoter 166877 167876 1 - . ID=CGI_10014578; scaffold43954 GLEAN mRNA 167213 170876 1 + . ID=CGI_10014579; scaffold43954 WUBlastX LINE_L1 177277 177588 37 - . . scaffold43954 WUBlastX LINE_RTE-BovB 177344 177442 65 - . . scaffold43954 WUBlastX LINE_RTE-BovB 177451 177651 219 - . . scaffold43954 WUBlastX LINE_L1 177475 177813 90 - . . scaffold43954 GLEAN promoter 187330 188329 0.997744 + . ID=CGI_10014580; scaffold43954 GLEAN mRNA 188330 194166 0.997744 + . ID=CGI_10014580; scaffold43954 WUBlastX DNA_TcMar-Tc1 190259 190888 47 - . . scaffold43954 WUBlastX DNA_TcMar-Tc1 190268 190501 75 - . . scaffold43954 TRF Tandem_Repeat 192801 192840 80 + . . scaffold43954 TRF Tandem_Repeat 213604 213668 130 + . . scaffold43954 TRF Tandem_Repeat 217285 217351 134 + . . scaffold43954 TRF Tandem_Repeat 223785 223832 96 + . . scaffold43954 TRF Tandem_Repeat 226197 227470 1475 + . . scaffold43954 TRF Tandem_Repeat 231433 231694 308 + . . scaffold43954 TRF Tandem_Repeat 231880 231927 96 + . . scaffold43954 TRF Tandem_Repeat 232902 232926 50 + . . scaffold43954 TRF Tandem_Repeat 243126 243296 111 + . . scaffold43954 TRF Tandem_Repeat 243141 243303 192 + . . scaffold43954 TRF Tandem_Repeat 243189 243289 89 + . . scaffold43954 WUBlastX LINE_RTE-X 248340 248729 23 + . . scaffold43954 WUBlastX LINE_RTE-X 248433 248609 61 + . . scaffold43954 WUBlastX LINE_RTE-X 248466 248729 61 + . . scaffold43954 GLEAN promoter 268305 269304 1 + . ID=CGI_10014581; scaffold43954 GLEAN mRNA 269305 281183 1 + . ID=CGI_10014581; scaffold43954 TRF Tandem_Repeat 277771 277820 66 + . . scaffold43954 GLEAN mRNA 283914 285374 1 - . ID=CGI_10014582; scaffold43954 GLEAN promoter 285375 286374 1 - . ID=CGI_10014582; scaffold43954 GLEAN promoter 286551 287550 0.5 + . ID=CGI_10014583; scaffold43954 GLEAN mRNA 287551 298862 0.5 + . ID=CGI_10014583; scaffold43954 TRF Tandem_Repeat 304111 304223 86 + . . scaffold43954 GLEAN mRNA 304419 317867 1 - . ID=CGI_10014584; scaffold43954 GLEAN promoter 317868 318867 1 - . ID=CGI_10014584; scaffold43954 TRF Tandem_Repeat 320055 320181 188 + . . scaffold43954 TRF Tandem_Repeat 322340 322668 273 + . . scaffold43954 TRF Tandem_Repeat 322344 322668 309 + . . scaffold43954 GLEAN promoter 324708 325707 0.994697 + . ID=CGI_10014585; scaffold43954 GLEAN mRNA 325708 329568 0.994697 + . ID=CGI_10014585; scaffold43954 GLEAN promoter 333847 334846 0.999507 + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 334260 334484 40 + . . scaffold43954 WUBlastX DNA_MuDR 334565 334681 21 + . . scaffold43954 WUBlastX DNA_MuDR 334616 335029 41 + . . scaffold43954 WUBlastX DNA_MuDR 334763 335032 82 + . . scaffold43954 WUBlastX DNA_MuDR 334817 335170 49 + . . scaffold43954 GLEAN mRNA 334847 335729 0.999507 + . ID=CGI_10014586; scaffold43954 WUBlastX DNA_MuDR 335328 335387 22 + . . scaffold43954 GLEAN promoter 336360 337359 0.997868 + . ID=CGI_10014587; scaffold43954 GLEAN mRNA 337360 345462 0.997868 + . ID=CGI_10014587; scaffold43954 TRF Tandem_Repeat 337609 337639 62 + . . scaffold43954 TRF Tandem_Repeat 350992 352072 1973 + . . scaffold43954 WUBlastX LTR_Gypsy 352106 352798 276 + . . scaffold43954 WUBlastX LTR_Gypsy 352846 353013 20 + . . scaffold43954 WUBlastX LTR_Gypsy-Cigr 352882 353019 46 + . . scaffold43954 WUBlastX LTR_Gypsy 353093 353149 25 + . . scaffold43954 GLEAN mRNA 358018 371448 1 - . ID=CGI_10014588; scaffold43954 TRF Tandem_Repeat 366040 366093 54 + . . scaffold43954 TRF Tandem_Repeat 366063 366095 57 + . . scaffold43954 TRF Tandem_Repeat 368969 368997 58 + . . scaffold43954 GLEAN promoter 371449 372448 1 - . ID=CGI_10014588; scaffold43954 GLEAN promoter 373643 374642 0.999998 + . ID=CGI_10014589; scaffold43954 GLEAN mRNA 374643 387373 0.999998 + . ID=CGI_10014589; scaffold43954 GLEAN promoter 388209 389208 0.477911 + . ID=CGI_10014590; scaffold43954 GLEAN mRNA 389209 393169 0.477911 + . ID=CGI_10014590; scaffold43954 TRF Tandem_Repeat 395042 395127 77 + . . scaffold43954 TRF Tandem_Repeat 396544 396584 82 + . . scaffold43954 TRF Tandem_Repeat 396665 396695 62 + . . scaffold43954 TRF Tandem_Repeat 397282 397355 55 + . . scaffold43954 WUBlastX RC_Helitron 402196 402756 93 + . . scaffold43956 TRF Tandem_Repeat 4736 4772 74 + . . scaffold43956 WUBlastX LINE_CR1 4848 4898 22 + . . scaffold43956 WUBlastX LINE_Proto2 5427 6239 20 + . . scaffold43956 WUBlastX LINE_Proto2 5559 6224 83 + . . scaffold43956 WUBlastX LINE_Proto2 6298 7371 128 + . . scaffold43956 WUBlastX LINE_RTE-X 6598 7371 136 + . . scaffold43956 WUBlastX LINE_RTE-X 6715 7371 162 + . . scaffold43956 WUBlastX LINE_L2 6970 7461 64 + . . scaffold43956 WUBlastX LINE_RTE-BovB 7069 7617 29 + . . scaffold43956 WUBlastX LINE_I 8291 8329 21 + . . scaffold43956 WUBlastX LINE_CR1 8297 8347 21 + . . scaffold43956 WUBlastX LINE_RTE-X 8904 9746 193 + . . scaffold43956 WUBlastX LINE_RTE-X 8919 10277 162 + . . scaffold43956 WUBlastX LINE_RTE-X 8919 10001 190 + . . scaffold43956 WUBlastX LINE_CR1-L2 18232 18681 43 - . . scaffold43956 WUBlastX LINE_CR1-L2 18346 18546 77 - . . scaffold43956 GLEAN mRNA 19520 19957 0.999661 - . ID=CGI_10014616; scaffold43956 GLEAN promoter 19958 20957 0.999661 - . ID=CGI_10014616; scaffold43956 TRF Tandem_Repeat 20428 20467 80 + . . scaffold43956 TRF Tandem_Repeat 21113 21160 96 + . . scaffold43956 WUBlastX LTR_Gypsy 23952 24458 26 + . . scaffold43956 WUBlastX LTR_Gypsy 24063 24389 60 + . . scaffold43956 GLEAN promoter 24407 25406 0.983215 + . ID=CGI_10014618; scaffold43956 WUBlastX LTR_Copia 24590 24751 30 + . . scaffold43956 GLEAN mRNA 24793 25203 0.776794 - . ID=CGI_10014617; scaffold43956 GLEAN promoter 25204 26203 0.776794 - . ID=CGI_10014617; scaffold43956 GLEAN mRNA 25407 25814 0.983215 + . ID=CGI_10014618; scaffold43956 GLEAN mRNA 29963 31737 0.999969 - . ID=CGI_10014619; scaffold43956 TRF Tandem_Repeat 31202 31285 150 + . . scaffold43956 GLEAN promoter 31738 32737 0.999969 - . ID=CGI_10014619; scaffold43956 TRF Tandem_Repeat 34995 35067 112 + . . scaffold43956 TRF Tandem_Repeat 34995 35064 97 + . . scaffold43956 TRF Tandem_Repeat 36471 37388 1303 + . . scaffold43956 GLEAN mRNA 49557 49988 0.979762 - . ID=CGI_10014620; scaffold43956 GLEAN promoter 49989 50988 0.979762 - . ID=CGI_10014620; scaffold43956 TRF Tandem_Repeat 53382 53433 86 + . . scaffold43956 TRF Tandem_Repeat 53390 53432 68 + . . scaffold43956 TRF Tandem_Repeat 54894 55058 55 + . . scaffold43956 TRF Tandem_Repeat 54989 55114 76 + . . scaffold43956 WUBlastX LTR_Pao 60927 61571 532 - . . scaffold43956 WUBlastX LTR_Pao 61880 62092 139 - . . scaffold43956 WUBlastX LTR_Pao 61997 64243 977 - . . scaffold43956 WUBlastX LTR_Pao 62168 64690 361 - . . scaffold43956 TRF Tandem_Repeat 67440 67480 82 + . . scaffold43956 WUBlastX DNA_Kolobok-IS4 101021 101419 49 - . . scaffold43956 WUBlastX DNA_Kolobok-IS4 101105 101425 82 - . . scaffold43956 WUBlastX DNA_IS4EU 101353 102258 67 - . . scaffold43956 WUBlastX DNA_IS4EU 102962 103123 43 - . . scaffold43956 WUBlastX LINE_Penelope 103511 103966 21 + . . scaffold43956 WUBlastX LINE_Penelope 103606 103698 41 + . . scaffold43956 WUBlastX LINE_Penelope 103697 103930 108 + . . scaffold43956 WUBlastX LINE_Penelope 103932 104846 204 + . . scaffold43956 WUBlastX LINE_Penelope 104798 105118 44 + . . scaffold43956 GLEAN mRNA 108769 109206 0.999626 - . ID=CGI_10014621; scaffold43956 GLEAN promoter 109207 110206 0.999626 - . ID=CGI_10014621; scaffold43956 TRF Tandem_Repeat 109980 110004 50 + . . scaffold43956 TRF Tandem_Repeat 112060 112126 80 + . . scaffold43956 TRF Tandem_Repeat 112623 112674 90 + . . scaffold43956 TRF Tandem_Repeat 122292 122316 50 + . . scaffold43956 TRF Tandem_Repeat 123348 123420 146 + . . scaffold43956 TRF Tandem_Repeat 124265 124297 66 + . . scaffold43956 TRF Tandem_Repeat 128216 128278 126 + . . scaffold43956 TRF Tandem_Repeat 128280 128308 58 + . . scaffold43956 WUBlastX LTR_Pao 128438 129649 277 - . . scaffold43956 WUBlastX LTR_Pao 128648 129655 353 - . . scaffold43956 WUBlastX LTR_Pao 129661 129768 74 - . . scaffold43956 WUBlastX LTR_Pao 129661 129870 25 - . . scaffold43956 WUBlastX LTR_Pao 129667 129792 69 - . . scaffold43956 WUBlastX LTR_Pao 129854 130504 40 - . . scaffold43956 WUBlastX LTR_Pao 131046 131423 79 - . . scaffold43956 WUBlastX LTR_Pao 131214 131423 97 - . . scaffold43956 WUBlastX LTR_Pao 131321 131578 71 - . . scaffold43956 WUBlastX LTR_Pao 131638 131805 45 - . . scaffold43956 WUBlastX LTR_Pao 131710 131856 33 - . . scaffold43956 WUBlastX LTR_Pao 132295 132501 21 - . . scaffold43956 WUBlastX LTR_Pao 132336 132791 115 - . . scaffold43956 TRF Tandem_Repeat 149086 149138 106 + . . scaffold43956 GLEAN mRNA 149759 153346 0.937841 - . ID=CGI_10014622; scaffold43956 GLEAN promoter 153347 154346 0.937841 - . ID=CGI_10014622; scaffold43956 TRF Tandem_Repeat 165794 166796 1334 + . . scaffold43956 GLEAN mRNA 172560 179500 0.663382 - . ID=CGI_10014623; scaffold43956 TRF Tandem_Repeat 175677 176514 1182 + . . scaffold43956 TRF Tandem_Repeat 176525 176575 84 + . . scaffold43956 GLEAN promoter 179501 180500 0.663382 - . ID=CGI_10014623; scaffold43956 GLEAN mRNA 179755 195616 0.663597 - . ID=CGI_10014624; scaffold43956 TRF Tandem_Repeat 180725 180891 199 + . . scaffold43956 TRF Tandem_Repeat 185795 186277 518 + . . scaffold43956 TRF Tandem_Repeat 187551 189492 2154 + . . scaffold43956 TRF Tandem_Repeat 190240 190588 270 + . . scaffold43956 GLEAN promoter 195617 196616 0.663597 - . ID=CGI_10014624; scaffold43956 GLEAN promoter 195621 196620 0.999988 + . ID=CGI_10014625; scaffold43956 GLEAN mRNA 196621 207711 0.999988 + . ID=CGI_10014625; scaffold43956 TRF Tandem_Repeat 199491 199542 97 + . . scaffold43956 GLEAN mRNA 208106 244546 0.558196 - . ID=CGI_10014626; scaffold43956 TRF Tandem_Repeat 209964 210160 187 + . . scaffold43956 TRF Tandem_Repeat 227342 227372 55 + . . scaffold43956 TRF Tandem_Repeat 244379 244403 50 + . . scaffold43956 GLEAN promoter 244547 245546 0.558196 - . ID=CGI_10014626; scaffold43956 GLEAN mRNA 246636 251098 0.721799 - . ID=CGI_10014627; scaffold43956 GLEAN promoter 251099 252098 0.721799 - . ID=CGI_10014627; scaffold43956 GLEAN promoter 251685 252684 1 + . ID=CGI_10014628; scaffold43956 GLEAN mRNA 252685 258648 1 + . ID=CGI_10014628; scaffold43956 GLEAN promoter 263025 264024 0.89652 + . ID=CGI_10014629; scaffold43956 GLEAN mRNA 264025 271929 0.89652 + . ID=CGI_10014629; scaffold43956 TRF Tandem_Repeat 274363 274423 122 + . . scaffold43956 TRF Tandem_Repeat 275266 275298 66 + . . scaffold43956 GLEAN promoter 276025 277024 0.999995 + . ID=CGI_10014630; scaffold43956 GLEAN mRNA 277025 291895 0.999995 + . ID=CGI_10014630; scaffold43956 TRF Tandem_Repeat 278598 278668 142 + . . scaffold43956 TRF Tandem_Repeat 279027 279801 183 + . . scaffold43956 TRF Tandem_Repeat 279157 279829 713 + . . scaffold43956 TRF Tandem_Repeat 279234 279817 740 + . . scaffold43956 TRF Tandem_Repeat 281947 282117 261 + . . scaffold43956 GLEAN mRNA 291421 298739 0.721821 - . ID=CGI_10014631; scaffold43956 TRF Tandem_Repeat 293341 293380 80 + . . scaffold43956 TRF Tandem_Repeat 295725 296312 164 + . . scaffold43956 GLEAN promoter 298740 299739 0.721821 - . ID=CGI_10014631; scaffold43956 TRF Tandem_Repeat 300197 300335 125 + . . scaffold43956 TRF Tandem_Repeat 300334 300525 186 + . . scaffold43956 TRF Tandem_Repeat 300408 300527 141 + . . scaffold43956 TRF Tandem_Repeat 300612 300698 113 + . . scaffold43956 GLEAN promoter 300996 301995 0.999054 + . ID=CGI_10014632; scaffold43956 GLEAN mRNA 301996 328172 0.999054 + . ID=CGI_10014632; scaffold43956 TRF Tandem_Repeat 306012 306043 57 + . . scaffold43956 TRF Tandem_Repeat 306212 306258 58 + . . scaffold43956 TRF Tandem_Repeat 311215 311400 331 + . . scaffold43956 TRF Tandem_Repeat 311422 311615 298 + . . scaffold43956 TRF Tandem_Repeat 322218 322592 651 + . . scaffold43956 TRF Tandem_Repeat 326095 326297 399 + . . scaffold43956 GLEAN promoter 331429 332428 0.412716 + . ID=CGI_10014633; scaffold43956 GLEAN mRNA 332429 337395 0.412716 + . ID=CGI_10014633; scaffold43956 TRF Tandem_Repeat 337977 338196 320 + . . scaffold43956 TRF Tandem_Repeat 340308 340679 645 + . . scaffold43956 TRF Tandem_Repeat 340353 340659 355 + . . scaffold43956 GLEAN mRNA 343020 361351 0.950225 - . ID=CGI_10014634; scaffold43956 TRF Tandem_Repeat 345167 346815 2423 + . . scaffold43956 TRF Tandem_Repeat 355985 356030 92 + . . scaffold43956 TRF Tandem_Repeat 356534 356873 626 + . . scaffold43956 TRF Tandem_Repeat 359922 360148 93 + . . scaffold43956 TRF Tandem_Repeat 360528 360626 180 + . . scaffold43956 GLEAN promoter 361352 362351 0.950225 - . ID=CGI_10014634; scaffold43956 WUBlastX DNA_En-Spm 364667 365482 35 + . . scaffold43956 WUBlastX DNA_En-Spm 364871 365911 204 + . . scaffold43956 WUBlastX DNA_En-Spm 365129 366055 280 + . . scaffold43956 WUBlastX DNA_En-Spm 365946 366629 171 + . . scaffold43956 WUBlastX DNA_En-Spm 366003 366758 138 + . . scaffold43956 WUBlastX DNA_En-Spm 366021 366413 175 + . . scaffold43956 TRF Tandem_Repeat 374459 374506 96 + . . scaffold43956 WUBlastX LTR_Gypsy 378751 379143 267 + . . scaffold43956 WUBlastX LTR_Gypsy 379172 379375 103 + . . scaffold43956 WUBlastX LTR_Gypsy 379461 380024 185 + . . scaffold43956 WUBlastX LTR_Gypsy 380071 381750 1464 + . . scaffold43956 TRF Tandem_Repeat 400343 400370 56 + . . scaffold43964 WUBlastX LINE_RTE-X 1 756 206 - . . scaffold43964 WUBlastX LINE_RTE-X 4 1032 139 - . . scaffold43964 WUBlastX LINE_RTE-X 1055 1735 178 - . . scaffold43964 WUBlastX LINE_RTE-BovB 1253 1906 33 - . . scaffold43964 WUBlastX LINE_L1-Tx1 1925 2152 63 - . . scaffold43964 WUBlastX LTR_DIRS? 3863 4000 36 - . . scaffold43964 WUBlastX LTR_DIRS 4237 4728 70 - . . scaffold43964 TRF Tandem_Repeat 4966 5032 89 + . . scaffold43964 TRF Tandem_Repeat 16257 16323 84 + . . scaffold43964 TRF Tandem_Repeat 19125 19275 248 + . . scaffold43964 TRF Tandem_Repeat 19134 19243 64 + . . scaffold43964 GLEAN promoter 19719 20718 0.987606 + . ID=CGI_10014635; scaffold43964 GLEAN mRNA 20719 24408 0.987606 + . ID=CGI_10014635; scaffold43964 TRF Tandem_Repeat 20782 20828 94 + . . scaffold43964 GLEAN promoter 28544 29543 0.648541 + . ID=CGI_10014636; scaffold43964 GLEAN mRNA 29544 30173 0.648541 + . ID=CGI_10014636; scaffold43964 GLEAN promoter 31020 32019 1 + . ID=CGI_10014637; scaffold43964 GLEAN mRNA 32020 33030 1 + . ID=CGI_10014637; scaffold43964 GLEAN mRNA 36672 42389 0.999675 - . ID=CGI_10014638; scaffold43964 GLEAN promoter 42390 43389 0.999675 - . ID=CGI_10014638; scaffold43964 TRF Tandem_Repeat 56408 58165 2369 + . . scaffold43964 GLEAN promoter 70159 71158 0.587852 + . ID=CGI_10014639; scaffold43964 GLEAN mRNA 71159 94364 0.587852 + . ID=CGI_10014639; scaffold43964 TRF Tandem_Repeat 84196 84227 55 + . . scaffold43964 GLEAN mRNA 97607 100381 0.648527 - . ID=CGI_10014640; scaffold43964 GLEAN promoter 100382 101381 0.648527 - . ID=CGI_10014640; scaffold43964 TRF Tandem_Repeat 100902 100926 50 + . . scaffold43964 TRF Tandem_Repeat 101041 101081 75 + . . scaffold43964 GLEAN mRNA 105272 119212 1 - . ID=CGI_10014641; scaffold43964 GLEAN promoter 119213 120212 1 - . ID=CGI_10014641; scaffold43964 WUBlastX DNA_hAT 128276 129478 537 + . . scaffold43964 GLEAN promoter 128296 129295 1 + . ID=CGI_10014642; scaffold43964 GLEAN mRNA 129296 131440 1 + . ID=CGI_10014642; scaffold43964 WUBlastX DNA_hAT 130672 130881 143 + . . scaffold43964 WUBlastX DNA_hAT 130672 130923 115 + . . scaffold43964 WUBlastX DNA_hAT 130950 131165 89 + . . scaffold43964 WUBlastX DNA_hAT 130986 131165 90 + . . scaffold43964 WUBlastX DNA_hAT 131300 131416 62 + . . scaffold43964 GLEAN mRNA 134421 152513 0.996559 - . ID=CGI_10014643; scaffold43964 WUBlastX LINE_RTE-X 134734 134958 63 - . . scaffold43964 WUBlastX LINE_RTE-X 134806 134952 74 - . . scaffold43964 WUBlastX LINE_RTE-X 134806 135075 37 - . . scaffold43964 TRF Tandem_Repeat 137051 137290 107 + . . scaffold43964 TRF Tandem_Repeat 137094 137459 474 + . . scaffold43964 TRF Tandem_Repeat 142436 142466 62 + . . scaffold43964 GLEAN promoter 152514 153513 0.996559 - . ID=CGI_10014643; scaffold43964 GLEAN mRNA 157295 174286 0.910279 - . ID=CGI_10014644; scaffold43964 TRF Tandem_Repeat 157636 157716 153 + . . scaffold43964 TRF Tandem_Repeat 169949 169983 70 + . . scaffold43964 GLEAN promoter 174287 175286 0.910279 - . ID=CGI_10014644; scaffold43964 GLEAN promoter 181089 182088 0.999996 + . ID=CGI_10014645; scaffold43964 GLEAN mRNA 182089 190485 0.999996 + . ID=CGI_10014645; scaffold43964 TRF Tandem_Repeat 188872 188923 104 + . . scaffold43964 GLEAN promoter 192574 193573 1 + . ID=CGI_10014646; scaffold43964 GLEAN mRNA 193574 196886 1 + . ID=CGI_10014646; scaffold43964 GLEAN mRNA 197867 202024 1 - . ID=CGI_10014647; scaffold43964 TRF Tandem_Repeat 198954 199008 110 + . . scaffold43964 GLEAN promoter 201533 202532 1 + . ID=CGI_10014648; scaffold43964 GLEAN promoter 202025 203024 1 - . ID=CGI_10014647; scaffold43964 GLEAN mRNA 202533 211653 1 + . ID=CGI_10014648; scaffold43964 TRF Tandem_Repeat 208377 208427 84 + . . scaffold43964 TRF Tandem_Repeat 208438 209224 1082 + . . scaffold43964 GLEAN mRNA 215815 222290 0.991247 - . ID=CGI_10014649; scaffold43964 GLEAN promoter 222291 223290 0.991247 - . ID=CGI_10014649; scaffold43964 GLEAN promoter 223545 224544 0.975204 + . ID=CGI_10014650; scaffold43964 GLEAN mRNA 224545 245542 0.975204 + . ID=CGI_10014650; scaffold43964 TRF Tandem_Repeat 225105 225244 109 + . . scaffold43964 TRF Tandem_Repeat 229521 229621 168 + . . scaffold43964 GLEAN mRNA 248911 252443 1 - . ID=CGI_10014651; scaffold43964 GLEAN promoter 252444 253443 1 - . ID=CGI_10014651; scaffold43964 GLEAN promoter 253398 254397 0.999961 + . ID=CGI_10014652; scaffold43964 GLEAN mRNA 254398 262210 0.999961 + . ID=CGI_10014652; scaffold43964 TRF Tandem_Repeat 255559 255727 191 + . . scaffold43964 GLEAN promoter 265971 266970 0.99973 + . ID=CGI_10014653; scaffold43964 TRF Tandem_Repeat 266361 266454 57 + . . scaffold43964 GLEAN mRNA 266971 268374 0.99973 + . ID=CGI_10014653; scaffold43964 GLEAN promoter 267452 268451 0.52614 + . ID=CGI_10014654; scaffold43964 GLEAN mRNA 268452 286873 0.52614 + . ID=CGI_10014654; scaffold43964 TRF Tandem_Repeat 279777 280271 812 + . . scaffold43964 TRF Tandem_Repeat 280441 280776 609 + . . scaffold43964 TRF Tandem_Repeat 282947 283701 932 + . . scaffold43964 GLEAN mRNA 291141 295582 1 - . ID=CGI_10014655; scaffold43964 WUBlastX LINE_L2 292228 292494 85 + . . scaffold43964 WUBlastX LINE_L2 292484 292924 120 + . . scaffold43964 GLEAN promoter 295583 296582 1 - . ID=CGI_10014655; scaffold43964 TRF Tandem_Repeat 298506 298574 131 + . . scaffold43964 TRF Tandem_Repeat 298598 298626 58 + . . scaffold43964 TRF Tandem_Repeat 299507 299551 90 + . . scaffold43964 TRF Tandem_Repeat 302895 303030 87 + . . scaffold43964 TRF Tandem_Repeat 302913 303010 137 + . . scaffold43964 WUBlastX DNA_TcMar-Tc1 303686 304282 261 + . . scaffold43964 WUBlastX DNA_TcMar-Tc1 304291 304635 130 + . . scaffold43964 WUBlastX DNA_TcMar-Tc1 304635 304673 20 + . . scaffold43964 TRF Tandem_Repeat 311223 311254 50 + . . scaffold43964 TRF Tandem_Repeat 311324 311421 155 + . . scaffold43964 TRF Tandem_Repeat 311326 311421 147 + . . scaffold43964 GLEAN mRNA 314652 318145 1 - . ID=CGI_10014656; scaffold43964 TRF Tandem_Repeat 316720 316748 58 + . . scaffold43964 GLEAN promoter 318146 319145 1 - . ID=CGI_10014656; scaffold43964 GLEAN mRNA 318357 320321 0.99929 - . ID=CGI_10014657; scaffold43964 GLEAN promoter 320322 321321 0.99929 - . ID=CGI_10014657; scaffold43964 TRF Tandem_Repeat 321073 321232 220 + . . scaffold43964 GLEAN promoter 322260 323259 0.634978 + . ID=CGI_10014658; scaffold43964 GLEAN mRNA 323260 333228 0.634978 + . ID=CGI_10014658; scaffold43964 GLEAN mRNA 325865 328191 1 - . ID=CGI_10014659; scaffold43964 GLEAN promoter 328192 329191 1 - . ID=CGI_10014659; scaffold43964 WUBlastX LINE_Penelope 329168 329503 71 + . . scaffold43964 WUBlastX LINE_Penelope 329422 330063 162 + . . scaffold43964 GLEAN mRNA 335044 336278 0.997818 - . ID=CGI_10014660; scaffold43964 GLEAN promoter 336279 337278 0.997818 - . ID=CGI_10014660; scaffold43964 GLEAN promoter 337636 338635 1 + . ID=CGI_10014661; scaffold43964 GLEAN mRNA 338636 342902 1 + . ID=CGI_10014661; scaffold43964 WUBlastX LINE_Penelope 339249 339584 75 + . . scaffold43964 WUBlastX LINE_Penelope 339503 340153 209 + . . scaffold43964 GLEAN mRNA 346823 375363 0.925869 - . ID=CGI_10014662; scaffold43964 TRF Tandem_Repeat 362285 362312 56 + . . scaffold43964 GLEAN promoter 375364 376363 0.925869 - . ID=CGI_10014662; scaffold43964 GLEAN mRNA 378907 383468 0.999671 - . ID=CGI_10014663; scaffold43964 GLEAN promoter 383469 384468 0.999671 - . ID=CGI_10014663; scaffold43964 GLEAN mRNA 384021 399948 0.884498 - . ID=CGI_10014664; scaffold43964 TRF Tandem_Repeat 391271 391312 54 + . . scaffold43964 TRF Tandem_Repeat 394298 394347 100 + . . scaffold43964 TRF Tandem_Repeat 399445 399514 112 + . . scaffold43964 GLEAN promoter 399949 400948 0.884498 - . ID=CGI_10014664; scaffold43964 GLEAN promoter 402054 403053 0.59015 + . ID=CGI_10014665; scaffold43964 GLEAN mRNA 403054 403479 0.59015 + . ID=CGI_10014665; scaffold43986 GLEAN promoter 571 1570 0.999994 + . ID=CGI_10015011; scaffold43986 GLEAN mRNA 1571 4599 0.999994 + . ID=CGI_10015011; scaffold43986 TRF Tandem_Repeat 1726 1771 83 + . . scaffold43986 GLEAN mRNA 5705 23579 0.93772 - . ID=CGI_10015012; scaffold43986 TRF Tandem_Repeat 6936 6977 84 + . . scaffold43986 GLEAN promoter 8100 9099 0.999027 + . ID=CGI_10015013; scaffold43986 GLEAN mRNA 9100 16208 0.999027 + . ID=CGI_10015013; scaffold43986 TRF Tandem_Repeat 19110 19168 118 + . . scaffold43986 GLEAN promoter 23580 24579 0.93772 - . ID=CGI_10015012; scaffold43986 GLEAN promoter 25569 26568 1 + . ID=CGI_10015014; scaffold43986 GLEAN mRNA 26569 30733 1 + . ID=CGI_10015014; scaffold43986 GLEAN promoter 36282 37281 0.5 + . ID=CGI_10015015; scaffold43986 GLEAN mRNA 37282 38283 0.5 + . ID=CGI_10015015; scaffold43986 GLEAN promoter 44145 45144 0.183791 + . ID=CGI_10015016; scaffold43986 GLEAN mRNA 45145 48108 0.183791 + . ID=CGI_10015016; scaffold43986 TRF Tandem_Repeat 52946 53007 108 + . . scaffold43986 GLEAN mRNA 60040 65043 1 - . ID=CGI_10015017; scaffold43986 GLEAN promoter 65044 66043 1 - . ID=CGI_10015017; scaffold43986 TRF Tandem_Repeat 69339 69389 102 + . . scaffold43986 GLEAN promoter 72920 73919 0.99098 + . ID=CGI_10015018; scaffold43986 GLEAN mRNA 73920 77537 0.99098 + . ID=CGI_10015018; scaffold43986 GLEAN mRNA 79803 84636 0.999994 - . ID=CGI_10015019; scaffold43986 GLEAN promoter 84637 85636 0.999994 - . ID=CGI_10015019; scaffold43986 GLEAN mRNA 85896 95767 0.999675 - . ID=CGI_10015020; scaffold43986 TRF Tandem_Repeat 89863 89896 68 + . . scaffold43986 TRF Tandem_Repeat 91903 92027 225 + . . scaffold43986 GLEAN promoter 95047 96046 1 + . ID=CGI_10015021; scaffold43986 GLEAN promoter 95768 96767 0.999675 - . ID=CGI_10015020; scaffold43986 GLEAN mRNA 96047 98864 1 + . ID=CGI_10015021; scaffold43986 GLEAN mRNA 101043 110887 1 - . ID=CGI_10015022; scaffold43986 TRF Tandem_Repeat 104907 104957 102 + . . scaffold43986 GLEAN promoter 110888 111887 1 - . ID=CGI_10015022; scaffold43986 GLEAN mRNA 125937 127379 0.498472 - . ID=CGI_10015023; scaffold43986 GLEAN promoter 127380 128379 0.498472 - . ID=CGI_10015023; scaffold43986 WUBlastX LINE_RTE-X 128540 128860 39 - . . scaffold43986 WUBlastX LINE_RTE-X 128645 128860 66 - . . scaffold43986 WUBlastX LINE_RTE-X 128684 128860 72 - . . scaffold43986 GLEAN promoter 129511 130510 0.997258 + . ID=CGI_10015024; scaffold43986 GLEAN mRNA 130511 135950 0.997258 + . ID=CGI_10015024; scaffold43986 GLEAN promoter 135367 136366 0.999548 + . ID=CGI_10015025; scaffold43986 GLEAN mRNA 136367 147133 0.999548 + . ID=CGI_10015025; scaffold43986 TRF Tandem_Repeat 152336 152409 139 + . . scaffold43986 TRF Tandem_Repeat 155499 155544 92 + . . scaffold43986 GLEAN promoter 157447 158446 0.530877 + . ID=CGI_10015026; scaffold43986 GLEAN mRNA 158447 176870 0.530877 + . ID=CGI_10015026; scaffold43986 TRF Tandem_Repeat 163213 163270 73 + . . scaffold43986 TRF Tandem_Repeat 163214 163267 56 + . . scaffold43986 TRF Tandem_Repeat 164789 164826 76 + . . scaffold43986 TRF Tandem_Repeat 165528 165562 70 + . . scaffold43986 TRF Tandem_Repeat 166415 166439 50 + . . scaffold43986 TRF Tandem_Repeat 179061 179094 68 + . . scaffold43986 WUBlastX LINE_R2-Hero 186070 186330 41 + . . scaffold43986 WUBlastX LINE_R2-Hero 186344 186433 62 + . . scaffold43986 WUBlastX LINE_R2-Hero 186426 186989 60 + . . scaffold43986 WUBlastX LINE_R2-Hero 187329 187415 31 + . . scaffold43986 WUBlastX LINE_R2-Hero 187409 187603 58 + . . scaffold43986 WUBlastX LINE_R2-Hero 187745 187975 31 + . . scaffold43986 WUBlastX LINE_R2-Hero 188047 188226 98 + . . scaffold43986 WUBlastX LINE_R2-Hero 188053 188451 96 + . . scaffold43986 TRF Tandem_Repeat 189386 189445 120 + . . scaffold43986 GLEAN mRNA 198063 199181 0.69447 - . ID=CGI_10015027; scaffold43986 GLEAN promoter 199182 200181 0.69447 - . ID=CGI_10015027; scaffold43986 GLEAN mRNA 200301 200549 0.69447 - . ID=CGI_10015028; scaffold43986 GLEAN promoter 200550 201549 0.69447 - . ID=CGI_10015028; scaffold43986 TRF Tandem_Repeat 204562 204602 82 + . . scaffold43986 TRF Tandem_Repeat 207120 207161 84 + . . scaffold43986 TRF Tandem_Repeat 209250 209292 86 + . . scaffold43986 TRF Tandem_Repeat 212543 212869 423 + . . scaffold43986 TRF Tandem_Repeat 214410 214704 376 + . . scaffold43986 TRF Tandem_Repeat 214410 214746 372 + . . scaffold43986 TRF Tandem_Repeat 214410 214704 331 + . . scaffold43986 TRF Tandem_Repeat 214487 214746 319 + . . scaffold43986 TRF Tandem_Repeat 218440 218510 142 + . . scaffold43986 GLEAN mRNA 223063 224635 0.999662 - . ID=CGI_10015029; scaffold43986 GLEAN promoter 224636 225635 0.999662 - . ID=CGI_10015029; scaffold43986 GLEAN promoter 237801 238800 0.978209 + . ID=CGI_10015030; scaffold43986 GLEAN mRNA 238801 248192 0.978209 + . ID=CGI_10015030; scaffold43986 TRF Tandem_Repeat 243671 244584 989 + . . scaffold43986 GLEAN promoter 250951 251950 0.978838 + . ID=CGI_10015031; scaffold43986 GLEAN mRNA 251951 258609 0.978838 + . ID=CGI_10015031; scaffold43986 TRF Tandem_Repeat 253990 254150 277 + . . scaffold43986 GLEAN mRNA 261299 304105 0.999999 - . ID=CGI_10015032; scaffold43986 TRF Tandem_Repeat 283629 283659 62 + . . scaffold43986 TRF Tandem_Repeat 287882 287923 66 + . . scaffold43986 TRF Tandem_Repeat 290280 290310 53 + . . scaffold43986 GLEAN promoter 304106 305105 0.999999 - . ID=CGI_10015032; scaffold43986 TRF Tandem_Repeat 311737 312533 1210 + . . scaffold43986 TRF Tandem_Repeat 313485 313631 73 + . . scaffold43986 TRF Tandem_Repeat 313547 313676 93 + . . scaffold43986 TRF Tandem_Repeat 315689 315730 84 + . . scaffold43986 TRF Tandem_Repeat 317220 317328 146 + . . scaffold43986 TRF Tandem_Repeat 322842 322891 100 + . . scaffold43986 GLEAN promoter 325358 326357 0.999999 + . ID=CGI_10015033; scaffold43986 GLEAN mRNA 326358 336597 0.999999 + . ID=CGI_10015033; scaffold43986 TRF Tandem_Repeat 327149 327193 90 + . . scaffold43986 TRF Tandem_Repeat 329643 329688 92 + . . scaffold43986 TRF Tandem_Repeat 334372 334528 194 + . . scaffold43986 GLEAN promoter 336997 337996 0.992362 + . ID=CGI_10015034; scaffold43986 GLEAN mRNA 337997 346778 0.992362 + . ID=CGI_10015034; scaffold43986 TRF Tandem_Repeat 349841 349912 135 + . . scaffold43986 WUBlastX LINE_RTE-X 349956 350471 97 + . . scaffold43986 TRF Tandem_Repeat 353944 353985 50 + . . scaffold43986 TRF Tandem_Repeat 359182 359227 76 + . . scaffold43986 WUBlastX LINE_Penelope 369306 369542 52 - . . scaffold43986 WUBlastX LINE_Penelope 369904 370308 56 - . . scaffold43986 WUBlastX LINE_Penelope 370598 370957 52 - . . scaffold43986 WUBlastX LINE_Penelope 370718 371377 160 - . . scaffold43986 GLEAN mRNA 373829 375532 0.836238 - . ID=CGI_10015035; scaffold43986 GLEAN promoter 375533 376532 0.836238 - . ID=CGI_10015035; scaffold43986 TRF Tandem_Repeat 379071 380546 1578 + . . scaffold43986 TRF Tandem_Repeat 383396 383658 187 + . . scaffold43986 WUBlastX LINE_RTE-X 385662 386333 217 + . . scaffold43986 WUBlastX LINE_RTE-X 386366 386593 74 + . . scaffold43986 GLEAN mRNA 386684 393718 0.985724 - . ID=CGI_10015036; scaffold43986 WUBlastX LTR_Pao 387189 389708 1753 - . . scaffold43986 WUBlastX LTR_Pao 389716 391899 1449 - . . scaffold43986 WUBlastX LTR_Pao 391883 392725 61 - . . scaffold43986 WUBlastX LTR_Pao 391892 392536 388 - . . scaffold43986 GLEAN promoter 393719 394718 0.985724 - . ID=CGI_10015036; scaffold43986 TRF Tandem_Repeat 394151 394245 165 + . . scaffold43986 TRF Tandem_Repeat 394151 394244 125 + . . scaffold43986 TRF Tandem_Repeat 394994 395098 113 + . . scaffold43986 TRF Tandem_Repeat 394994 395098 126 + . . scaffold43986 WUBlastX DNA_hAT-Blackja 399928 400434 185 + . . scaffold43986 TRF Tandem_Repeat 409862 409905 88 + . . scaffold43986 WUBlastX LINE_L1-Tx1 410034 410417 51 - . . scaffold43986 WUBlastX LINE_L1-Tx1 410178 410417 60 - . . scaffold43986 WUBlastX LINE_L1 410366 411547 292 - . . scaffold43986 WUBlastX LINE_L1 410552 411544 449 - . . scaffold43986 WUBlastX LINE_L1-Tx1 410717 411547 699 - . . scaffold43986 WUBlastX LINE_Rex-Babar 410936 411673 24 - . . scaffold43986 WUBlastX LINE_RTE-BovB 411977 412147 21 - . . scaffold43986 GLEAN mRNA 417144 418428 0.99388 - . ID=CGI_10015037; scaffold43986 GLEAN promoter 418429 418891 0.99388 - . ID=CGI_10015037; scaffold43988 WUBlastX LINE_RTE-BovB 7272 7763 38 + . . scaffold43988 TRF Tandem_Repeat 9632 9718 167 + . . scaffold43988 TRF Tandem_Repeat 33786 33835 100 + . . scaffold43988 TRF Tandem_Repeat 34148 34214 127 + . . scaffold43988 TRF Tandem_Repeat 35633 35702 133 + . . scaffold43988 TRF Tandem_Repeat 38730 38780 102 + . . scaffold43988 TRF Tandem_Repeat 39816 39860 81 + . . scaffold43988 TRF Tandem_Repeat 39918 40349 224 + . . scaffold43988 TRF Tandem_Repeat 40415 40772 261 + . . scaffold43988 TRF Tandem_Repeat 40876 41632 215 + . . scaffold43988 TRF Tandem_Repeat 41344 41661 266 + . . scaffold43988 TRF Tandem_Repeat 42421 43102 430 + . . scaffold43988 TRF Tandem_Repeat 45435 46325 946 + . . scaffold43988 GLEAN mRNA 49566 61691 0.999886 - . ID=CGI_10014965; scaffold43988 WUBlastX LINE_RTE-X 60852 61379 142 - . . scaffold43988 WUBlastX LINE_RTE-X 60987 61370 167 - . . scaffold43988 GLEAN promoter 61692 62691 0.999886 - . ID=CGI_10014965; scaffold43988 GLEAN promoter 63663 64662 1 + . ID=CGI_10014966; scaffold43988 GLEAN mRNA 64663 69438 1 + . ID=CGI_10014966; scaffold43988 GLEAN mRNA 72041 79548 0.528864 - . ID=CGI_10014967; scaffold43988 TRF Tandem_Repeat 74232 74268 74 + . . scaffold43988 GLEAN promoter 78640 79639 0.999323 + . ID=CGI_10014968; scaffold43988 GLEAN promoter 79549 80548 0.528864 - . ID=CGI_10014967; scaffold43988 GLEAN mRNA 79640 101054 0.999323 + . ID=CGI_10014968; scaffold43988 TRF Tandem_Repeat 81146 81196 102 + . . scaffold43988 GLEAN mRNA 81332 95853 0.937811 - . ID=CGI_10014969; scaffold43988 GLEAN promoter 95854 96853 0.937811 - . ID=CGI_10014969; scaffold43988 TRF Tandem_Repeat 108731 108756 52 + . . scaffold43988 GLEAN mRNA 117261 121313 1 - . ID=CGI_10014970; scaffold43988 GLEAN promoter 121314 122313 1 - . ID=CGI_10014970; scaffold43988 TRF Tandem_Repeat 125461 125522 124 + . . scaffold43988 TRF Tandem_Repeat 138749 140918 4073 + . . scaffold43988 TRF Tandem_Repeat 159407 159518 136 + . . scaffold43988 TRF Tandem_Repeat 162034 162080 94 + . . scaffold43988 TRF Tandem_Repeat 162322 162390 129 + . . scaffold43988 TRF Tandem_Repeat 174927 174997 142 + . . scaffold43988 GLEAN mRNA 175722 177745 1 - . ID=CGI_10014971; scaffold43988 GLEAN promoter 177746 178745 1 - . ID=CGI_10014971; scaffold43988 TRF Tandem_Repeat 181531 181584 90 + . . scaffold43988 GLEAN mRNA 183752 195020 0.999674 - . ID=CGI_10014972; scaffold43988 GLEAN promoter 195021 196020 0.999674 - . ID=CGI_10014972; scaffold43988 GLEAN promoter 213692 214691 1 + . ID=CGI_10014973; scaffold43988 GLEAN mRNA 214692 220299 1 + . ID=CGI_10014973; scaffold43988 GLEAN mRNA 235229 237346 0.999908 - . ID=CGI_10014974; scaffold43988 GLEAN promoter 237347 238346 0.999908 - . ID=CGI_10014974; scaffold43988 TRF Tandem_Repeat 271951 272196 352 + . . scaffold43988 TRF Tandem_Repeat 292124 292184 70 + . . scaffold43988 TRF Tandem_Repeat 294101 294144 88 + . . scaffold43988 GLEAN promoter 311191 312190 0.644118 + . ID=CGI_10014975; scaffold43988 GLEAN mRNA 312191 323034 0.644118 + . ID=CGI_10014975; scaffold43988 GLEAN mRNA 328718 341688 0.999676 - . ID=CGI_10014976; scaffold43988 TRF Tandem_Repeat 328995 330514 1924 + . . scaffold43988 GLEAN promoter 341689 342688 0.999676 - . ID=CGI_10014976; scaffold43988 GLEAN mRNA 342131 351922 0.650923 - . ID=CGI_10014977; scaffold43988 TRF Tandem_Repeat 349213 349483 398 + . . scaffold43988 GLEAN promoter 351923 352922 0.650923 - . ID=CGI_10014977; scaffold43988 GLEAN promoter 352566 353565 1 + . ID=CGI_10014978; scaffold43988 GLEAN mRNA 353566 355823 1 + . ID=CGI_10014978; scaffold43988 GLEAN mRNA 356338 365172 1 - . ID=CGI_10014979; scaffold43988 TRF Tandem_Repeat 357697 357761 130 + . . scaffold43988 TRF Tandem_Repeat 359179 359218 62 + . . scaffold43988 GLEAN promoter 364922 365921 0.999676 + . ID=CGI_10014980; scaffold43988 GLEAN promoter 365173 366172 1 - . ID=CGI_10014979; scaffold43988 GLEAN mRNA 365922 369429 0.999676 + . ID=CGI_10014980; scaffold43988 GLEAN mRNA 373528 378221 0.439001 - . ID=CGI_10014981; scaffold43988 TRF Tandem_Repeat 373622 373647 52 + . . scaffold43988 GLEAN promoter 378222 379221 0.439001 - . ID=CGI_10014981; scaffold43988 WUBlastX LINE_RTE-X 379043 379585 147 + . . scaffold43988 GLEAN promoter 385702 386701 0.702157 + . ID=CGI_10014982; scaffold43988 TRF Tandem_Repeat 386251 386313 126 + . . scaffold43988 GLEAN mRNA 386702 389746 0.702157 + . ID=CGI_10014982; scaffold43988 GLEAN promoter 388942 389941 0.672492 + . ID=CGI_10014983; scaffold43988 GLEAN mRNA 389942 393021 0.672492 + . ID=CGI_10014983; scaffold43988 TRF Tandem_Repeat 397112 397164 70 + . . scaffold43988 GLEAN promoter 397322 398321 0.672492 + . ID=CGI_10014984; scaffold43988 GLEAN mRNA 398322 414892 0.672492 + . ID=CGI_10014984; scaffold43988 TRF Tandem_Repeat 411060 411123 128 + . . scaffold43988 TRF Tandem_Repeat 416405 416447 86 + . . scaffold44 GLEAN mRNA 652 1269 0.999998 - . ID=CGI_10016812; scaffold44 GLEAN promoter 1270 2269 0.999998 - . ID=CGI_10016812; scaffold44 TRF Tandem_Repeat 4248 4279 57 + . . scaffold44 TRF Tandem_Repeat 5143 5174 57 + . . scaffold44 GLEAN promoter 6728 7727 0.999991 + . ID=CGI_10016813; scaffold44 GLEAN mRNA 7728 9495 0.999991 + . ID=CGI_10016813; scaffold44 TRF Tandem_Repeat 10924 10970 73 + . . scaffold44 TRF Tandem_Repeat 10924 10971 60 + . . scaffold44 GLEAN mRNA 12779 18180 1 - . ID=CGI_10016814; scaffold44 GLEAN promoter 13766 14765 0.998812 + . ID=CGI_10016815; scaffold44 GLEAN mRNA 14766 35788 0.998812 + . ID=CGI_10016815; scaffold44 GLEAN promoter 18181 19180 1 - . ID=CGI_10016814; scaffold44 TRF Tandem_Repeat 25462 25513 104 + . . scaffold44 TRF Tandem_Repeat 31512 31569 82 + . . scaffold44 GLEAN promoter 44967 45966 1 + . ID=CGI_10016816; scaffold44 GLEAN mRNA 45967 46242 1 + . ID=CGI_10016816; scaffold44 GLEAN promoter 56483 57482 0.998738 + . ID=CGI_10016817; scaffold44 GLEAN mRNA 57483 64731 0.998738 + . ID=CGI_10016817; scaffold44 GLEAN mRNA 67919 73316 0.490205 - . ID=CGI_10016818; scaffold44 GLEAN promoter 73317 74316 0.490205 - . ID=CGI_10016818; scaffold44 TRF Tandem_Repeat 79228 79268 82 + . . scaffold44 TRF Tandem_Repeat 81712 81760 98 + . . scaffold44 TRF Tandem_Repeat 81815 81856 66 + . . scaffold44 GLEAN promoter 83536 84535 0.779083 + . ID=CGI_10016819; scaffold44 GLEAN mRNA 84536 96783 0.779083 + . ID=CGI_10016819; scaffold44 WUBlastX DNA_Zator 90192 90296 24 + . . scaffold44 TRF Tandem_Repeat 100531 100560 60 + . . scaffold44 TRF Tandem_Repeat 100560 100629 140 + . . scaffold44 GLEAN mRNA 102007 119284 0.388764 - . ID=CGI_10016820; scaffold44 TRF Tandem_Repeat 102537 102703 244 + . . scaffold44 TRF Tandem_Repeat 107638 107676 78 + . . scaffold44 GLEAN promoter 108754 109753 1 + . ID=CGI_10016821; scaffold44 GLEAN mRNA 109754 113762 1 + . ID=CGI_10016821; scaffold44 GLEAN promoter 113926 114925 0.443847 + . ID=CGI_10016822; scaffold44 GLEAN mRNA 114926 129443 0.443847 + . ID=CGI_10016822; scaffold44 GLEAN promoter 119285 120284 0.388764 - . ID=CGI_10016820; scaffold44 GLEAN promoter 128581 129580 0.986676 + . ID=CGI_10016823; scaffold44 GLEAN mRNA 129581 129739 0.986676 + . ID=CGI_10016823; scaffold44 GLEAN mRNA 137488 140223 0.764171 - . ID=CGI_10016824; scaffold44 GLEAN promoter 140224 141223 0.764171 - . ID=CGI_10016824; scaffold44 WUBlastX LINE_L2 143488 144084 62 + . . scaffold44 WUBlastX LINE_RTE-X 143596 144864 410 + . . scaffold44 GLEAN promoter 148070 149069 0.990978 + . ID=CGI_10016825; scaffold44 GLEAN mRNA 149070 152017 0.990978 + . ID=CGI_10016825; scaffold44 WUBlastX LINE_L1-Tx1 157365 157601 26 + . . scaffold44 WUBlastX LINE_L1-Tx1 157535 157621 35 + . . scaffold44 WUBlastX LINE_L1-Tx1 158413 158604 33 + . . scaffold44 WUBlastX LINE_L1-Tx1 158591 158953 66 + . . scaffold44 WUBlastX LINE_L1 158675 158953 96 + . . scaffold44 WUBlastX LINE_L1-Tx1 158932 159561 147 + . . scaffold44 WUBlastX LINE_L1-Tx1 159052 159567 408 + . . scaffold44 WUBlastX LINE_L1-Tx1 159527 159940 118 + . . scaffold44 WUBlastX LINE_L1-Tx1 159911 160828 125 + . . scaffold44 WUBlastX LINE_L1 160322 160960 46 + . . scaffold44 WUBlastX LINE_L1 164321 164614 24 - . . scaffold44 WUBlastX LINE_L1-Tx1 172865 173398 60 - . . scaffold44 WUBlastX LINE_L1-Tx1 172871 173287 79 - . . scaffold44 WUBlastX LINE_L1 173924 174079 37 - . . scaffold44 WUBlastX LINE_L1 174141 174446 57 - . . scaffold44 WUBlastX LINE_L1-Tx1 174174 174425 66 - . . scaffold44 WUBlastX LINE_L1 174446 174676 27 - . . scaffold44 WUBlastX LINE_L1-Tx1 174493 174618 39 - . . scaffold44 WUBlastX LINE_L1 175187 175522 52 - . . scaffold44 WUBlastX LINE_L1-Tx1 175247 175552 115 - . . scaffold44 WUBlastX LINE_L1-Tx1 175531 175671 45 - . . scaffold44 WUBlastX LINE_L1 175617 175757 21 - . . scaffold44 WUBlastX LINE_L1 175620 175724 25 - . . scaffold44 WUBlastX LINE_L1 175623 175706 33 - . . scaffold44 TRF Tandem_Repeat 204047 204073 54 + . . scaffold44 WUBlastX LINE_L1 215764 216282 21 - . . scaffold44 WUBlastX LINE_L1-Tx1 215941 216195 25 - . . scaffold44 TRF Tandem_Repeat 219921 220800 869 + . . scaffold44 WUBlastX LTR_Ngaro 224606 225079 188 + . . scaffold44 WUBlastX LTR_Ngaro 224666 225205 61 + . . scaffold44 WUBlastX LTR_Ngaro 225336 226628 833 + . . scaffold44 TRF Tandem_Repeat 228217 228426 76 + . . scaffold44 GLEAN mRNA 230434 242405 0.999061 - . ID=CGI_10016826; scaffold44 TRF Tandem_Repeat 240715 240785 126 + . . scaffold44 TRF Tandem_Repeat 240839 240894 112 + . . scaffold44 GLEAN promoter 242406 243405 0.999061 - . ID=CGI_10016826; scaffold44 GLEAN promoter 243151 244150 0.999499 + . ID=CGI_10016827; scaffold44 WUBlastX LTR_Ngaro 243375 243488 46 + . . scaffold44 WUBlastX LTR_Ngaro 243533 243856 169 + . . scaffold44 WUBlastX LTR_Ngaro 243551 244033 55 + . . scaffold44 GLEAN mRNA 244151 247724 0.999499 + . ID=CGI_10016827; scaffold44 WUBlastX DNA_Kolobok-IS4 244181 244684 86 + . . scaffold44 TRF Tandem_Repeat 254443 254481 78 + . . scaffold44 GLEAN promoter 260407 261406 0.99991 + . ID=CGI_10016828; scaffold44 GLEAN mRNA 261407 261781 0.99991 + . ID=CGI_10016828; scaffold44 GLEAN mRNA 261692 266884 0.999466 - . ID=CGI_10016829; scaffold44 TRF Tandem_Repeat 263382 264515 1621 + . . scaffold44 GLEAN promoter 266885 267884 0.999466 - . ID=CGI_10016829; scaffold44 TRF Tandem_Repeat 271113 271142 60 + . . scaffold44 GLEAN mRNA 272523 277829 0.999834 - . ID=CGI_10016830; scaffold44 TRF Tandem_Repeat 275679 275737 118 + . . scaffold44 GLEAN promoter 277830 278829 0.999834 - . ID=CGI_10016830; scaffold44 GLEAN mRNA 278189 278684 0.999891 - . ID=CGI_10016831; scaffold44 GLEAN promoter 278685 279684 0.999891 - . ID=CGI_10016831; scaffold44 GLEAN promoter 284829 285828 0.999372 + . ID=CGI_10016832; scaffold44 GLEAN mRNA 285829 286131 0.999372 + . ID=CGI_10016832; scaffold44 TRF Tandem_Repeat 300532 300631 200 + . . scaffold44 TRF Tandem_Repeat 301879 301931 106 + . . scaffold44 GLEAN mRNA 304340 304834 0.76964 - . ID=CGI_10016833; scaffold44 GLEAN promoter 304835 305834 0.76964 - . ID=CGI_10016833; scaffold44 GLEAN mRNA 305594 319708 0.998758 - . ID=CGI_10016834; scaffold44 TRF Tandem_Repeat 312619 312670 104 + . . scaffold44 TRF Tandem_Repeat 313201 313250 100 + . . scaffold44 TRF Tandem_Repeat 313622 313676 65 + . . scaffold44 TRF Tandem_Repeat 313623 313670 69 + . . scaffold44 GLEAN promoter 319709 320708 0.998758 - . ID=CGI_10016834; scaffold44 GLEAN promoter 342718 343717 0.431535 + . ID=CGI_10016835; scaffold44 GLEAN mRNA 343718 345406 0.431535 + . ID=CGI_10016835; scaffold44 GLEAN mRNA 346940 353357 0.748127 - . ID=CGI_10016836; scaffold44 WUBlastX DNA_IS4EU 349346 350083 139 - . . scaffold44 WUBlastX DNA_IS4EU 349361 350560 109 - . . scaffold44 WUBlastX DNA_IS4EU 349361 349987 226 - . . scaffold44 WUBlastX DNA_IS4EU 349982 350734 85 - . . scaffold44 GLEAN promoter 352762 353761 1 + . ID=CGI_10016837; scaffold44 GLEAN promoter 353358 354357 0.748127 - . ID=CGI_10016836; scaffold44 GLEAN mRNA 353762 362213 1 + . ID=CGI_10016837; scaffold44 GLEAN mRNA 369681 374648 1 - . ID=CGI_10016838; scaffold44 WUBlastX LINE_CR1 369918 370700 26 - . . scaffold44 TRF Tandem_Repeat 372515 374381 2408 + . . scaffold44 GLEAN promoter 374649 375648 1 - . ID=CGI_10016838; scaffold44 TRF Tandem_Repeat 376794 376903 78 + . . scaffold44 GLEAN mRNA 377498 394536 0.863441 - . ID=CGI_10016839; scaffold44 WUBlastX LINE_RTE-X 388386 388574 68 + . . scaffold44 WUBlastX LINE_RTE-X 388386 388610 52 + . . scaffold44 WUBlastX LINE_RTE-X 389221 389349 31 + . . scaffold44 TRF Tandem_Repeat 391691 391729 60 + . . scaffold44 TRF Tandem_Repeat 393174 393209 72 + . . scaffold44 GLEAN promoter 394537 395536 0.863441 - . ID=CGI_10016839; scaffold44 TRF Tandem_Repeat 401868 401919 104 + . . scaffold44 TRF Tandem_Repeat 410418 410660 333 + . . scaffold44 TRF Tandem_Repeat 410484 410586 70 + . . scaffold44 TRF Tandem_Repeat 420049 420150 132 + . . scaffold44 GLEAN promoter 424219 425218 0.490034 + . ID=CGI_10016840; scaffold44 GLEAN mRNA 425219 447072 0.490034 + . ID=CGI_10016840; scaffold44 TRF Tandem_Repeat 430245 430438 230 + . . scaffold44 TRF Tandem_Repeat 431870 432057 153 + . . scaffold44 GLEAN promoter 446186 447185 0.999867 + . ID=CGI_10016841; scaffold44 GLEAN mRNA 447186 449879 0.999867 + . ID=CGI_10016841; scaffold44 GLEAN promoter 451829 452828 0.989884 + . ID=CGI_10016842; scaffold44 GLEAN mRNA 452829 480659 0.989884 + . ID=CGI_10016842; scaffold44 TRF Tandem_Repeat 454269 454522 481 + . . scaffold44 WUBlastX DNA_Maverick 459615 459920 67 - . . scaffold44 TRF Tandem_Repeat 464010 464069 52 + . . scaffold44 TRF Tandem_Repeat 464010 464069 65 + . . scaffold44 TRF Tandem_Repeat 465388 465564 282 + . . scaffold44 TRF Tandem_Repeat 465388 465564 282 + . . scaffold44 TRF Tandem_Repeat 470811 470873 126 + . . scaffold44 TRF Tandem_Repeat 477458 477501 88 + . . scaffold440 TRF Tandem_Repeat 1299 1395 99 + . . scaffold440 WUBlastX DNA_Academ 2863 3228 138 - . . scaffold440 WUBlastX DNA_Academ 2926 3312 72 - . . scaffold440 WUBlastX LINE_Penelope 10637 10909 104 + . . scaffold440 GLEAN promoter 34899 35898 0.99945 + . ID=CGI_10014132; scaffold440 GLEAN mRNA 35899 36087 0.99945 + . ID=CGI_10014132; scaffold440 WUBlastX LTR_Gypsy 37034 37555 82 + . . scaffold440 WUBlastX LTR_Gypsy 37196 37486 83 + . . scaffold440 WUBlastX LTR_Gypsy 38573 39007 43 + . . scaffold440 WUBlastX LTR_Gypsy 38762 38950 66 + . . scaffold440 WUBlastX LTR_Gypsy 38804 39007 90 + . . scaffold440 WUBlastX LTR_Gypsy 38838 39371 240 + . . scaffold440 WUBlastX LTR_Gypsy 38937 39635 416 + . . scaffold440 WUBlastX LTR_Gypsy 39629 39958 294 + . . scaffold440 WUBlastX LTR_Gypsy-Cigr 39629 40159 259 + . . scaffold440 WUBlastX LTR_Gypsy 39632 40369 196 + . . scaffold440 WUBlastX LTR_Gypsy 40271 40387 35 + . . scaffold440 WUBlastX LTR_Gypsy 40402 40545 70 + . . scaffold440 WUBlastX LTR_Gypsy 40402 40584 35 + . . scaffold440 WUBlastX LINE_L1 41673 42116 81 + . . scaffold440 WUBlastX LINE_L1-Tx1 41763 42110 169 + . . scaffold440 WUBlastX LINE_L1-Tx1 42118 43122 158 + . . scaffold440 WUBlastX LTR_Gypsy-Cigr 43049 43525 179 + . . scaffold440 WUBlastX LTR_Gypsy 43121 43324 179 + . . scaffold440 WUBlastX LTR_Gypsy 43133 43768 140 + . . scaffold440 WUBlastX LTR_Gypsy 43768 43950 35 + . . scaffold440 WUBlastX LTR_Gypsy 43768 43911 70 + . . scaffold440 TRF Tandem_Repeat 55490 55526 74 + . . scaffold440 TRF Tandem_Repeat 55526 55579 92 + . . scaffold440 GLEAN promoter 65069 66068 0.499463 + . ID=CGI_10014134; scaffold440 GLEAN mRNA 66069 69192 0.499463 + . ID=CGI_10014134; scaffold440 TRF Tandem_Repeat 70109 70365 442 + . . scaffold440 TRF Tandem_Repeat 112982 113144 121 + . . scaffold440 TRF Tandem_Repeat 113012 113185 129 + . . scaffold440 TRF Tandem_Repeat 113352 113389 60 + . . scaffold440 WUBlastX LINE_L2 114738 114917 24 - . . scaffold440 WUBlastX LINE_RTE-X 114788 115090 41 - . . scaffold440 WUBlastX LINE_RTE-BovB 114824 115075 73 - . . scaffold440 WUBlastX LINE_Jockey 115113 116003 128 - . . scaffold440 WUBlastX LINE_RTE-X 115146 115868 206 - . . scaffold440 TRF Tandem_Repeat 116395 116426 55 + . . scaffold440 WUBlastX LINE_L1-Tx1 116492 116899 51 - . . scaffold440 WUBlastX LINE_L1-Tx1 116606 116983 36 - . . scaffold440 WUBlastX LINE_L1 116973 117539 68 - . . scaffold440 WUBlastX LINE_L1-Tx1 117114 117743 74 - . . scaffold440 WUBlastX LINE_L1 117153 117647 90 - . . scaffold440 WUBlastX DNA_hAT-Tip100? 121221 121661 44 - . . scaffold440 WUBlastX DNA_hAT-Tip100 121314 121583 68 - . . scaffold440 WUBlastX DNA_Academ 124759 125052 55 - . . scaffold440 TRF Tandem_Repeat 127267 127407 95 + . . scaffold440 WUBlastX DNA_hAT-Ac 129957 130286 92 - . . scaffold440 WUBlastX DNA_hAT-Ac 130029 130571 21 - . . scaffold440 WUBlastX DNA_hAT-Ac 130651 130800 25 - . . scaffold440 WUBlastX DNA_hAT-Ac 130799 131149 68 - . . scaffold440 WUBlastX DNA_hAT-Ac 132037 132210 21 - . . scaffold440 WUBlastX DNA_hAT-Ac 132106 132237 37 - . . scaffold440 GLEAN promoter 132801 133800 0.978924 + . ID=CGI_10014135; scaffold440 GLEAN mRNA 133801 134751 0.978924 + . ID=CGI_10014135; scaffold440 GLEAN promoter 151022 152021 0.544847 + . ID=CGI_10014136; scaffold440 GLEAN mRNA 152022 177214 0.544847 + . ID=CGI_10014136; scaffold440 TRF Tandem_Repeat 167105 167159 103 + . . scaffold440 TRF Tandem_Repeat 170025 170431 391 + . . scaffold440 TRF Tandem_Repeat 170043 170423 501 + . . scaffold440 WUBlastX LINE_R2-Hero 178282 178500 152 + . . scaffold440 WUBlastX LINE_R2-Hero 178484 178585 57 + . . scaffold440 WUBlastX LINE_R2-Hero 178573 178800 65 + . . scaffold440 WUBlastX LINE_R2-Hero 178722 179399 166 + . . scaffold440 WUBlastX LINE_R2-Hero 178818 179504 164 + . . scaffold440 WUBlastX LINE_R2-Hero 178902 179399 185 + . . scaffold440 WUBlastX LINE_R2-Hero 179129 179785 103 + . . scaffold440 WUBlastX LTR_DIRS 180544 181164 86 + . . scaffold440 WUBlastX LTR_DIRS 181583 181804 57 + . . scaffold440 WUBlastX LTR_DIRS 181646 181984 45 + . . scaffold440 WUBlastX LTR_DIRS 181975 183900 1456 + . . scaffold440 WUBlastX LTR_DIRS 183870 184847 593 + . . scaffold440 GLEAN promoter 206124 207123 0.728194 + . ID=CGI_10014138; scaffold440 GLEAN mRNA 207124 225037 0.728194 + . ID=CGI_10014138; scaffold440 GLEAN mRNA 225898 226230 1 - . ID=CGI_10014139; scaffold440 GLEAN promoter 226231 227230 1 - . ID=CGI_10014139; scaffold440 GLEAN mRNA 228458 229506 0.937764 - . ID=CGI_10014140; scaffold440 GLEAN promoter 229507 230506 0.937764 - . ID=CGI_10014140; scaffold440 TRF Tandem_Repeat 230390 230436 94 + . . scaffold440 WUBlastX LINE_RTE-X 240924 241115 63 + . . scaffold440 TRF Tandem_Repeat 253156 253200 90 + . . scaffold440 GLEAN mRNA 260779 260934 1 - . ID=CGI_10014141; scaffold440 GLEAN promoter 260935 261934 1 - . ID=CGI_10014141; scaffold440 TRF Tandem_Repeat 260987 261038 88 + . . scaffold440 TRF Tandem_Repeat 260988 261038 68 + . . scaffold440 GLEAN mRNA 261331 262341 0.651116 - . ID=CGI_10014142; scaffold440 GLEAN promoter 262342 263341 0.651116 - . ID=CGI_10014142; scaffold440 GLEAN promoter 265172 266171 1 + . ID=CGI_10014143; scaffold440 GLEAN mRNA 266172 268025 1 + . ID=CGI_10014143; scaffold440 TRF Tandem_Repeat 268324 269137 1141 + . . scaffold440 TRF Tandem_Repeat 273236 273359 223 + . . scaffold440 TRF Tandem_Repeat 280896 281555 878 + . . scaffold440 GLEAN promoter 283962 284961 0.999351 + . ID=CGI_10014144; scaffold440 GLEAN mRNA 284962 311438 0.999351 + . ID=CGI_10014144; scaffold440 WUBlastX LTR_Gypsy 285956 286162 145 + . . scaffold440 WUBlastX LTR_Gypsy 286171 286473 114 + . . scaffold440 WUBlastX LTR_Gypsy 286174 286659 76 + . . scaffold440 TRF Tandem_Repeat 290443 290479 74 + . . scaffold440 TRF Tandem_Repeat 296948 296999 86 + . . scaffold440 TRF Tandem_Repeat 301671 302423 1051 + . . scaffold440 TRF Tandem_Repeat 301671 302420 1028 + . . scaffold440 TRF Tandem_Repeat 304988 305013 52 + . . scaffold440 TRF Tandem_Repeat 305059 305868 836 + . . scaffold440 TRF Tandem_Repeat 305151 305893 849 + . . scaffold440 TRF Tandem_Repeat 306985 307060 52 + . . scaffold440 TRF Tandem_Repeat 312176 312204 58 + . . scaffold440 TRF Tandem_Repeat 318636 318670 52 + . . scaffold440 TRF Tandem_Repeat 318702 319997 1793 + . . scaffold440 WUBlastX LTR_Gypsy 324756 325559 174 - . . scaffold440 WUBlastX LTR_Gypsy 324960 325574 351 - . . scaffold440 WUBlastX LTR_Gypsy 325567 326163 167 - . . scaffold440 WUBlastX LTR_Gypsy 325567 326025 248 - . . scaffold440 WUBlastX LTR_Gypsy 326648 326818 41 - . . scaffold440 WUBlastX LTR_Gypsy 326690 327157 174 - . . scaffold440 WUBlastX LTR_Gypsy 326975 327193 83 - . . scaffold440 WUBlastX LTR_Gypsy 327189 327311 27 - . . scaffold440 WUBlastX LTR_Gypsy 327214 327924 275 - . . scaffold440 WUBlastX LTR_Gypsy 327340 327924 447 - . . scaffold440 WUBlastX LTR_Gypsy 327340 328299 384 - . . scaffold440 WUBlastX LTR_Gypsy 328373 329434 64 - . . scaffold440 WUBlastX LTR_Gypsy 328709 329434 163 - . . scaffold440 WUBlastX DNA_IS4EU 337771 338418 83 + . . scaffold440 WUBlastX DNA_IS4EU 337900 338418 112 + . . scaffold440 TRF Tandem_Repeat 344181 344230 66 + . . scaffold440 WUBlastX LINE_CR1-L2 369002 369061 33 + . . scaffold440 TRF Tandem_Repeat 374618 374660 61 + . . scaffold440 TRF Tandem_Repeat 375318 375363 92 + . . scaffold440 TRF Tandem_Repeat 377479 377547 63 + . . scaffold440 TRF Tandem_Repeat 377816 377854 69 + . . scaffold440 TRF Tandem_Repeat 377872 377932 108 + . . scaffold440 GLEAN promoter 378064 379063 0.999957 + . ID=CGI_10014145; scaffold440 GLEAN mRNA 379064 384487 0.999957 + . ID=CGI_10014145; scaffold440 WUBlastX LTR_DIRS 386688 386945 31 + . . scaffold44006 GLEAN mRNA 9065 23431 0.999343 - . ID=CGI_10015569; scaffold44006 TRF Tandem_Repeat 15783 16080 497 + . . scaffold44006 WUBlastX LINE_CR1 17209 17301 80 + . . scaffold44006 TRF Tandem_Repeat 19879 19920 84 + . . scaffold44006 GLEAN promoter 21384 22383 1 + . ID=CGI_10015570; scaffold44006 GLEAN mRNA 22384 24929 1 + . ID=CGI_10015570; scaffold44006 GLEAN promoter 23432 24431 0.999343 - . ID=CGI_10015569; scaffold44006 TRF Tandem_Repeat 35911 35982 67 + . . scaffold44006 GLEAN promoter 50991 51990 0.999998 + . ID=CGI_10015571; scaffold44006 GLEAN mRNA 51991 62904 0.999998 + . ID=CGI_10015571; scaffold44006 TRF Tandem_Repeat 52767 52806 80 + . . scaffold44006 TRF Tandem_Repeat 59738 59787 100 + . . scaffold44006 GLEAN promoter 62168 63167 0.996832 + . ID=CGI_10015572; scaffold44006 GLEAN mRNA 63168 66642 0.996832 + . ID=CGI_10015572; scaffold44006 TRF Tandem_Repeat 85805 85830 52 + . . scaffold44006 GLEAN mRNA 85925 92831 1 - . ID=CGI_10015573; scaffold44006 TRF Tandem_Repeat 89267 89324 107 + . . scaffold44006 GLEAN promoter 92832 93831 1 - . ID=CGI_10015573; scaffold44006 GLEAN promoter 94072 95071 0.949709 + . ID=CGI_10015574; scaffold44006 GLEAN mRNA 95072 120906 0.949709 + . ID=CGI_10015574; scaffold44006 TRF Tandem_Repeat 106225 106276 50 + . . scaffold44006 TRF Tandem_Repeat 106284 107080 1106 + . . scaffold44006 TRF Tandem_Repeat 108680 110763 1670 + . . scaffold44006 TRF Tandem_Repeat 108680 110763 2183 + . . scaffold44006 TRF Tandem_Repeat 108680 110763 2183 + . . scaffold44006 WUBlastX DNA_En-Spm 117539 117586 20 + . . scaffold44006 GLEAN mRNA 118395 118568 0.776794 - . ID=CGI_10015575; scaffold44006 GLEAN promoter 118569 119568 0.776794 - . ID=CGI_10015575; scaffold44006 TRF Tandem_Repeat 118681 119174 158 + . . scaffold44006 TRF Tandem_Repeat 118684 118875 368 + . . scaffold44006 GLEAN mRNA 122305 124415 1 - . ID=CGI_10015576; scaffold44006 GLEAN promoter 124416 125415 1 - . ID=CGI_10015576; scaffold44006 GLEAN mRNA 129012 151133 0.998912 - . ID=CGI_10015577; scaffold44006 GLEAN promoter 151134 152133 0.998912 - . ID=CGI_10015577; scaffold44006 TRF Tandem_Repeat 158983 159043 122 + . . scaffold44006 GLEAN mRNA 164939 177880 0.999976 - . ID=CGI_10015578; scaffold44006 TRF Tandem_Repeat 166070 166116 94 + . . scaffold44006 TRF Tandem_Repeat 169839 169903 94 + . . scaffold44006 GLEAN promoter 177881 178880 0.999976 - . ID=CGI_10015578; scaffold44006 TRF Tandem_Repeat 208645 208687 86 + . . scaffold44006 TRF Tandem_Repeat 210537 210584 55 + . . scaffold44006 TRF Tandem_Repeat 213572 213613 84 + . . scaffold44006 GLEAN mRNA 218311 223788 1 - . ID=CGI_10015579; scaffold44006 TRF Tandem_Repeat 221195 221287 105 + . . scaffold44006 GLEAN promoter 223789 224788 1 - . ID=CGI_10015579; scaffold44006 GLEAN mRNA 227355 240371 1 - . ID=CGI_10015580; scaffold44006 GLEAN promoter 240372 241371 1 - . ID=CGI_10015580; scaffold44006 TRF Tandem_Repeat 241659 241703 90 + . . scaffold44006 GLEAN mRNA 250442 262690 0.99731 - . ID=CGI_10015581; scaffold44006 WUBlastX DNA_TcMar-Tc1 255561 255959 68 + . . scaffold44006 WUBlastX DNA_TcMar-Tc1 255639 255953 70 + . . scaffold44006 GLEAN promoter 262691 263690 0.99731 - . ID=CGI_10015581; scaffold44006 GLEAN mRNA 263345 266575 0.613879 - . ID=CGI_10015582; scaffold44006 GLEAN promoter 266576 267575 0.613879 - . ID=CGI_10015582; scaffold44006 TRF Tandem_Repeat 267365 267415 93 + . . scaffold44006 TRF Tandem_Repeat 276685 276793 110 + . . scaffold44006 TRF Tandem_Repeat 282801 282855 110 + . . scaffold44006 TRF Tandem_Repeat 286923 286952 60 + . . scaffold44006 GLEAN promoter 288906 289905 0.794504 + . ID=CGI_10015583; scaffold44006 GLEAN mRNA 289906 312494 0.794504 + . ID=CGI_10015583; scaffold44006 GLEAN mRNA 303309 304505 0.999629 - . ID=CGI_10015584; scaffold44006 GLEAN promoter 304506 305505 0.999629 - . ID=CGI_10015584; scaffold44006 TRF Tandem_Repeat 311260 311594 313 + . . scaffold44006 TRF Tandem_Repeat 311260 311594 318 + . . scaffold44006 TRF Tandem_Repeat 311591 311917 385 + . . scaffold44006 TRF Tandem_Repeat 311591 311917 424 + . . scaffold44006 TRF Tandem_Repeat 321588 321659 75 + . . scaffold44006 TRF Tandem_Repeat 321599 321654 58 + . . scaffold44006 TRF Tandem_Repeat 322245 322312 136 + . . scaffold44006 TRF Tandem_Repeat 326735 326797 126 + . . scaffold44006 TRF Tandem_Repeat 341513 341556 88 + . . scaffold44006 GLEAN promoter 369308 370307 1 + . ID=CGI_10015585; scaffold44006 GLEAN mRNA 370308 370833 1 + . ID=CGI_10015585; scaffold44006 GLEAN mRNA 372007 377480 0.999849 - . ID=CGI_10015586; scaffold44006 TRF Tandem_Repeat 374188 374240 106 + . . scaffold44006 TRF Tandem_Repeat 374734 374789 85 + . . scaffold44006 TRF Tandem_Repeat 374823 375614 1196 + . . scaffold44006 GLEAN promoter 377481 378480 0.999849 - . ID=CGI_10015586; scaffold44006 GLEAN promoter 379337 380336 1 + . ID=CGI_10015587; scaffold44006 GLEAN mRNA 380337 383214 1 + . ID=CGI_10015587; scaffold44006 GLEAN promoter 385876 386875 1 + . ID=CGI_10015588; scaffold44006 GLEAN mRNA 386876 388181 1 + . ID=CGI_10015588; scaffold44006 GLEAN promoter 390817 391816 0.999982 + . ID=CGI_10015589; scaffold44006 GLEAN mRNA 391817 394187 0.999982 + . ID=CGI_10015589; scaffold44006 GLEAN mRNA 404503 408810 0.988721 - . ID=CGI_10015590; scaffold44006 GLEAN promoter 408811 409810 0.988721 - . ID=CGI_10015590; scaffold44006 GLEAN promoter 409271 410270 0.999428 + . ID=CGI_10015591; scaffold44006 GLEAN mRNA 410271 411853 0.999428 + . ID=CGI_10015591; scaffold44006 GLEAN promoter 415424 416423 0.681261 + . ID=CGI_10015592; scaffold44006 GLEAN mRNA 416424 420619 0.681261 + . ID=CGI_10015592; scaffold44006 TRF Tandem_Repeat 417471 417727 317 + . . scaffold44006 GLEAN mRNA 422154 432525 0.999395 - . ID=CGI_10015593; scaffold44006 WUBlastX LINE_CR1-L2 430338 430745 42 + . . scaffold44006 WUBlastX LINE_CR1-L2 430338 430568 96 + . . scaffold44006 GLEAN promoter 432526 433525 0.999395 - . ID=CGI_10015593; scaffold44008 WUBlastX LTR_Gypsy-Cigr 5 1615 1069 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 1611 2363 550 + . . scaffold44008 WUBlastX LTR_Gypsy 5599 5736 25 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 5665 6303 69 + . . scaffold44008 WUBlastX LTR_Gypsy 6270 6752 58 + . . scaffold44008 WUBlastX LTR_Gypsy 6754 9327 1221 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 7159 9327 1421 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 9323 10075 550 + . . scaffold44008 TRF Tandem_Repeat 16844 16881 55 + . . scaffold44008 WUBlastX LTR_Gypsy 18365 18484 53 + . . scaffold44008 WUBlastX LTR_Gypsy 18481 18720 41 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 19594 20163 60 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 19669 20151 119 + . . scaffold44008 WUBlastX LTR_Gypsy 19744 20151 150 + . . scaffold44008 WUBlastX LTR_Gypsy 20171 20299 71 + . . scaffold44008 WUBlastX LTR_Gypsy 20300 20476 65 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 20309 20458 71 + . . scaffold44008 WUBlastX LTR_Gypsy 20318 20506 62 + . . scaffold44008 WUBlastX LTR_Gypsy 26046 26207 56 + . . scaffold44008 WUBlastX LTR_Gypsy 26204 26443 41 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 27317 27886 60 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 27392 27874 119 + . . scaffold44008 WUBlastX LTR_Gypsy 27467 27874 150 + . . scaffold44008 WUBlastX LTR_Gypsy 27894 28022 71 + . . scaffold44008 WUBlastX LTR_Gypsy 28023 28199 65 + . . scaffold44008 WUBlastX LTR_Gypsy-Cigr 28032 28181 71 + . . scaffold44008 WUBlastX LTR_Gypsy 28041 28229 62 + . . scaffold44008 GLEAN promoter 34269 35268 0.997111 + . ID=CGI_10015279; scaffold44008 GLEAN promoter 34492 35491 0.537986 + . ID=CGI_10015280; scaffold44008 GLEAN promoter 35187 36186 0.990867 + . ID=CGI_10015281; scaffold44008 GLEAN mRNA 35269 35457 0.997111 + . ID=CGI_10015279; scaffold44008 WUBlastX DNA_Harbinger 35468 35608 40 + . . scaffold44008 GLEAN mRNA 35492 36178 0.537986 + . ID=CGI_10015280; scaffold44008 WUBlastX DNA_Harbinger 35927 36124 34 + . . scaffold44008 GLEAN mRNA 36187 36621 0.990867 + . ID=CGI_10015281; scaffold44008 GLEAN mRNA 36940 62806 0.508026 - . ID=CGI_10015282; scaffold44008 WUBlastX DNA_Harbinger 36972 37076 50 - . . scaffold44008 WUBlastX DNA_Harbinger 37042 37440 307 - . . scaffold44008 WUBlastX DNA_Harbinger 37443 38204 528 - . . scaffold44008 TRF Tandem_Repeat 39485 40281 1425 + . . scaffold44008 TRF Tandem_Repeat 43220 43273 54 + . . scaffold44008 TRF Tandem_Repeat 44692 44765 53 + . . scaffold44008 GLEAN promoter 62807 63806 0.508026 - . ID=CGI_10015282; scaffold44008 GLEAN promoter 64115 65114 0.999805 + . ID=CGI_10015283; scaffold44008 TRF Tandem_Repeat 64605 64721 102 + . . scaffold44008 TRF Tandem_Repeat 64606 64720 126 + . . scaffold44008 GLEAN mRNA 65115 73920 0.999805 + . ID=CGI_10015283; scaffold44008 GLEAN mRNA 76312 76818 0.999372 - . ID=CGI_10015284; scaffold44008 GLEAN promoter 76819 77818 0.999372 - . ID=CGI_10015284; scaffold44008 TRF Tandem_Repeat 109335 110503 900 + . . scaffold44008 GLEAN mRNA 114633 123869 1 - . ID=CGI_10015285; scaffold44008 TRF Tandem_Repeat 121801 121853 106 + . . scaffold44008 GLEAN promoter 123013 124012 1 + . ID=CGI_10015286; scaffold44008 GLEAN promoter 123870 124869 1 - . ID=CGI_10015285; scaffold44008 GLEAN mRNA 124013 129050 1 + . ID=CGI_10015286; scaffold44008 GLEAN mRNA 134334 148481 1 - . ID=CGI_10015287; scaffold44008 TRF Tandem_Repeat 136843 136896 101 + . . scaffold44008 GLEAN promoter 148482 149481 1 - . ID=CGI_10015287; scaffold44008 GLEAN promoter 149245 150244 0.987347 + . ID=CGI_10015288; scaffold44008 GLEAN mRNA 150245 156268 0.987347 + . ID=CGI_10015288; scaffold44008 GLEAN mRNA 156881 163634 0.850526 - . ID=CGI_10015289; scaffold44008 GLEAN promoter 163635 164634 0.850526 - . ID=CGI_10015289; scaffold44008 TRF Tandem_Repeat 166825 166860 72 + . . scaffold44008 TRF Tandem_Repeat 171199 171233 61 + . . scaffold44008 GLEAN mRNA 176056 181412 0.761228 - . ID=CGI_10015290; scaffold44008 TRF Tandem_Repeat 177280 177398 141 + . . scaffold44008 WUBlastX LINE_L2 179007 179570 68 - . . scaffold44008 WUBlastX LINE_L2 179597 179869 112 - . . scaffold44008 WUBlastX LINE_CR1-L2 179642 179911 100 - . . scaffold44008 GLEAN promoter 180040 181039 1 + . ID=CGI_10015291; scaffold44008 WUBlastX LINE_L2 180765 180956 27 - . . scaffold44008 GLEAN mRNA 181040 186065 1 + . ID=CGI_10015291; scaffold44008 GLEAN promoter 181413 182412 0.761228 - . ID=CGI_10015290; scaffold44008 TRF Tandem_Repeat 183429 183502 148 + . . scaffold44008 GLEAN promoter 185439 186438 1 + . ID=CGI_10015292; scaffold44008 GLEAN mRNA 186439 186738 1 + . ID=CGI_10015292; scaffold44008 TRF Tandem_Repeat 193705 193840 81 + . . scaffold44008 WUBlastX LINE_RTE-BovB 199498 199710 47 - . . scaffold44008 WUBlastX LINE_RTE-BovB 199537 199767 121 - . . scaffold44008 WUBlastX LINE_RTE-BovB 215609 216097 119 - . . scaffold44008 TRF Tandem_Repeat 216412 216805 387 + . . scaffold44008 GLEAN promoter 217361 218360 1 + . ID=CGI_10015293; scaffold44008 GLEAN mRNA 218361 218942 1 + . ID=CGI_10015293; scaffold44008 GLEAN promoter 220656 221655 0.999675 + . ID=CGI_10015295; scaffold44008 GLEAN mRNA 221511 223065 0.999676 - . ID=CGI_10015294; scaffold44008 GLEAN mRNA 221656 227838 0.999675 + . ID=CGI_10015295; scaffold44008 TRF Tandem_Repeat 221902 221977 143 + . . scaffold44008 GLEAN promoter 223066 224065 0.999676 - . ID=CGI_10015294; scaffold44008 GLEAN mRNA 225034 226932 1 - . ID=CGI_10015296; scaffold44008 TRF Tandem_Repeat 225424 225461 76 + . . scaffold44008 GLEAN promoter 226933 227932 1 - . ID=CGI_10015296; scaffold44008 TRF Tandem_Repeat 232264 232307 88 + . . scaffold44008 TRF Tandem_Repeat 233424 233517 103 + . . scaffold44008 TRF Tandem_Repeat 239608 239669 124 + . . scaffold44008 TRF Tandem_Repeat 240827 240877 102 + . . scaffold44008 TRF Tandem_Repeat 244469 244536 136 + . . scaffold44008 GLEAN mRNA 252443 265115 0.568595 - . ID=CGI_10015297; scaffold44008 GLEAN promoter 265116 266115 0.568595 - . ID=CGI_10015297; scaffold44008 GLEAN mRNA 274883 278713 0.838955 - . ID=CGI_10015298; scaffold44008 GLEAN promoter 278714 279713 0.838955 - . ID=CGI_10015298; scaffold44008 TRF Tandem_Repeat 291386 291424 78 + . . scaffold44008 TRF Tandem_Repeat 294480 294517 76 + . . scaffold44008 TRF Tandem_Repeat 294517 294546 60 + . . scaffold44008 TRF Tandem_Repeat 309332 309369 51 + . . scaffold44008 TRF Tandem_Repeat 311837 311894 116 + . . scaffold44008 TRF Tandem_Repeat 312488 312524 74 + . . scaffold44008 TRF Tandem_Repeat 326309 326381 146 + . . scaffold44008 TRF Tandem_Repeat 331184 331243 120 + . . scaffold44008 TRF Tandem_Repeat 332309 332367 109 + . . scaffold44008 TRF Tandem_Repeat 335472 335505 68 + . . scaffold44008 TRF Tandem_Repeat 337208 337244 74 + . . scaffold44008 GLEAN mRNA 339942 350142 0.593198 - . ID=CGI_10015299; scaffold44008 TRF Tandem_Repeat 347685 347721 74 + . . scaffold44008 GLEAN promoter 350143 351142 0.593198 - . ID=CGI_10015299; scaffold44008 GLEAN promoter 352787 353786 0.499838 + . ID=CGI_10015300; scaffold44008 GLEAN mRNA 353787 363820 0.499838 + . ID=CGI_10015300; scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354282 46 + . . scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354204 47 + . . scaffold44008 WUBlastX DNA_hAT-Tip100 353896 354108 97 + . . scaffold44008 WUBlastX DNA_hAT 353929 354411 41 + . . scaffold44008 WUBlastX DNA_hAT-Tip100 354420 354809 128 + . . scaffold44008 WUBlastX DNA_hAT-Tip100 354618 354848 59 + . . scaffold44008 TRF Tandem_Repeat 379145 379215 96 + . . scaffold44008 TRF Tandem_Repeat 387314 387345 64 + . . scaffold44008 GLEAN promoter 395746 396745 0.99947 + . ID=CGI_10015301; scaffold44008 GLEAN mRNA 396746 410270 0.99947 + . ID=CGI_10015301; scaffold44008 TRF Tandem_Repeat 399193 399218 52 + . . scaffold44008 GLEAN mRNA 412477 419109 0.672085 - . ID=CGI_10015302; scaffold44008 GLEAN promoter 419110 420109 0.672085 - . ID=CGI_10015302; scaffold44008 TRF Tandem_Repeat 420102 420208 114 + . . scaffold44008 TRF Tandem_Repeat 420112 420208 92 + . . scaffold44008 TRF Tandem_Repeat 420132 420188 60 + . . scaffold44008 GLEAN promoter 422337 423336 1 + . ID=CGI_10015303; scaffold44008 GLEAN mRNA 423337 423989 1 + . ID=CGI_10015303; scaffold44054 GLEAN promoter 7712 8711 0.734447 + . ID=CGI_10016150; scaffold44054 GLEAN mRNA 8712 9518 0.734447 + . ID=CGI_10016150; scaffold44054 GLEAN promoter 12714 13713 1 + . ID=CGI_10016151; scaffold44054 GLEAN mRNA 13714 14535 1 + . ID=CGI_10016151; scaffold44054 GLEAN promoter 16120 17119 0.999988 + . ID=CGI_10016152; scaffold44054 GLEAN mRNA 17120 17950 0.999988 + . ID=CGI_10016152; scaffold44054 WUBlastX LINE_RTE-X 26772 27041 88 + . . scaffold44054 WUBlastX LINE_L2 30213 30839 99 + . . scaffold44054 WUBlastX LINE_CR1 30324 30788 241 + . . scaffold44054 WUBlastX LINE_CR1 30568 31266 257 + . . scaffold44054 WUBlastX LINE_CR1 31298 31429 38 + . . scaffold44054 WUBlastX LINE_CR1 31322 31420 44 + . . scaffold44054 WUBlastX LINE_CR1 31346 31420 53 + . . scaffold44054 TRF Tandem_Repeat 33276 33533 315 + . . scaffold44054 GLEAN mRNA 36864 47086 0.999949 - . ID=CGI_10016153; scaffold44054 TRF Tandem_Repeat 37483 37830 662 + . . scaffold44054 TRF Tandem_Repeat 41746 42294 782 + . . scaffold44054 TRF Tandem_Repeat 42411 42607 187 + . . scaffold44054 TRF Tandem_Repeat 43017 43162 150 + . . scaffold44054 TRF Tandem_Repeat 43386 43881 796 + . . scaffold44054 TRF Tandem_Repeat 43472 43881 703 + . . scaffold44054 TRF Tandem_Repeat 45237 45292 58 + . . scaffold44054 GLEAN promoter 47087 48086 0.999949 - . ID=CGI_10016153; scaffold44054 WUBlastX DNA_PiggyBac 47700 47840 50 - . . scaffold44054 WUBlastX DNA_PiggyBac 48294 48401 35 - . . scaffold44054 GLEAN promoter 48551 49550 0.999057 + . ID=CGI_10016154; scaffold44054 WUBlastX DNA_PiggyBac 48692 48937 37 - . . scaffold44054 WUBlastX DNA_PiggyBac 48930 49124 29 - . . scaffold44054 WUBlastX DNA_PiggyBac 48930 49028 45 - . . scaffold44054 WUBlastX DNA_PiggyBac 48945 49028 58 - . . scaffold44054 TRF Tandem_Repeat 49211 49248 76 + . . scaffold44054 GLEAN mRNA 49551 57581 0.999057 + . ID=CGI_10016154; scaffold44054 GLEAN promoter 57683 58682 0.613533 + . ID=CGI_10016155; scaffold44054 GLEAN mRNA 58683 58850 0.613533 + . ID=CGI_10016155; scaffold44054 TRF Tandem_Repeat 60101 60137 74 + . . scaffold44054 TRF Tandem_Repeat 65764 66040 330 + . . scaffold44054 TRF Tandem_Repeat 69985 70867 1079 + . . scaffold44054 GLEAN mRNA 71971 72414 0.999106 - . ID=CGI_10016156; scaffold44054 WUBlastX DNA_Kolobok-Hyd 72031 72432 27 - . . scaffold44054 GLEAN promoter 72415 73414 0.999106 - . ID=CGI_10016156; scaffold44054 GLEAN mRNA 73135 76491 0.974222 - . ID=CGI_10016157; scaffold44054 WUBlastX DNA_Kolobok-Hyd 73388 73603 31 - . . scaffold44054 TRF Tandem_Repeat 75428 75456 58 + . . scaffold44054 GLEAN promoter 76492 77491 0.974222 - . ID=CGI_10016157; scaffold44054 TRF Tandem_Repeat 99111 99322 126 + . . scaffold44054 TRF Tandem_Repeat 99111 99322 307 + . . scaffold44054 TRF Tandem_Repeat 99159 99296 78 + . . scaffold44054 TRF Tandem_Repeat 101036 101060 50 + . . scaffold44054 TRF Tandem_Repeat 105457 105482 52 + . . scaffold44054 TRF Tandem_Repeat 105647 105672 52 + . . scaffold44054 WUBlastX LINE_RTE-X 111747 112100 65 + . . scaffold44054 WUBlastX LINE_RTE-X 112894 113037 49 + . . scaffold44054 WUBlastX LINE_RTE-X 112942 113037 68 + . . scaffold44054 WUBlastX LINE_RTE-X 113043 113291 74 + . . scaffold44054 WUBlastX LINE_RTE-X 113043 113336 47 + . . scaffold44054 WUBlastX LINE_RTE-X 113536 113595 21 + . . scaffold44054 WUBlastX LINE_RTE-X 113752 113886 23 + . . scaffold44054 TRF Tandem_Repeat 120724 120769 60 + . . scaffold44054 TRF Tandem_Repeat 122856 122901 51 + . . scaffold44054 TRF Tandem_Repeat 123254 123301 96 + . . scaffold44054 GLEAN mRNA 123530 124144 0.995064 - . ID=CGI_10016158; scaffold44054 TRF Tandem_Repeat 123713 123928 163 + . . scaffold44054 GLEAN promoter 124145 125144 0.995064 - . ID=CGI_10016158; scaffold44054 TRF Tandem_Repeat 124682 125234 408 + . . scaffold44054 TRF Tandem_Repeat 124682 125234 532 + . . scaffold44054 TRF Tandem_Repeat 125607 127093 2184 + . . scaffold44054 TRF Tandem_Repeat 154722 154773 68 + . . scaffold44054 TRF Tandem_Repeat 154723 154761 51 + . . scaffold44054 GLEAN mRNA 157821 161531 0.966494 - . ID=CGI_10016159; scaffold44054 GLEAN promoter 161532 162531 0.966494 - . ID=CGI_10016159; scaffold44054 GLEAN promoter 162704 163703 0.620542 + . ID=CGI_10016160; scaffold44054 GLEAN mRNA 163704 179870 0.620542 + . ID=CGI_10016160; scaffold44054 TRF Tandem_Repeat 163955 165339 1367 + . . scaffold44054 TRF Tandem_Repeat 166354 166579 344 + . . scaffold44054 TRF Tandem_Repeat 183105 183171 134 + . . scaffold44054 GLEAN promoter 184445 185444 0.811543 + . ID=CGI_10016161; scaffold44054 GLEAN mRNA 185445 192030 0.811543 + . ID=CGI_10016161; scaffold44054 TRF Tandem_Repeat 189302 189844 872 + . . scaffold44054 GLEAN promoter 191602 192601 1 + . ID=CGI_10016162; scaffold44054 GLEAN mRNA 192602 204916 1 + . ID=CGI_10016162; scaffold44054 TRF Tandem_Repeat 192735 192764 51 + . . scaffold44054 TRF Tandem_Repeat 193653 195581 2498 + . . scaffold44054 TRF Tandem_Repeat 203805 204301 868 + . . scaffold44054 TRF Tandem_Repeat 207892 208589 1047 + . . scaffold44054 GLEAN mRNA 211587 215021 1 - . ID=CGI_10016163; scaffold44054 GLEAN promoter 215022 216021 1 - . ID=CGI_10016163; scaffold44054 TRF Tandem_Repeat 216084 216122 53 + . . scaffold44054 GLEAN mRNA 218509 220647 0.531587 - . ID=CGI_10016164; scaffold44054 WUBlastX DNA_hAT 220321 220566 63 - . . scaffold44054 GLEAN promoter 220648 221647 0.531587 - . ID=CGI_10016164; scaffold44054 TRF Tandem_Repeat 221924 222500 452 + . . scaffold44054 TRF Tandem_Repeat 221984 222500 190 + . . scaffold44054 TRF Tandem_Repeat 222244 222381 100 + . . scaffold44054 TRF Tandem_Repeat 226715 226778 128 + . . scaffold44054 TRF Tandem_Repeat 229118 229179 124 + . . scaffold44054 TRF Tandem_Repeat 233861 233894 59 + . . scaffold44054 TRF Tandem_Repeat 233894 233932 78 + . . scaffold44054 TRF Tandem_Repeat 235483 235636 218 + . . scaffold44054 GLEAN mRNA 237823 239206 0.977481 - . ID=CGI_10016165; scaffold44054 GLEAN promoter 239207 240206 0.977481 - . ID=CGI_10016165; scaffold44054 GLEAN mRNA 246735 251377 0.558032 - . ID=CGI_10016167; scaffold44054 GLEAN promoter 251378 252377 0.558032 - . ID=CGI_10016167; scaffold44054 GLEAN promoter 252632 253631 0.889923 + . ID=CGI_10016168; scaffold44054 TRF Tandem_Repeat 252704 252736 66 + . . scaffold44054 GLEAN mRNA 253632 261018 0.889923 + . ID=CGI_10016168; scaffold44054 TRF Tandem_Repeat 260376 260451 57 + . . scaffold44054 TRF Tandem_Repeat 261798 261897 137 + . . scaffold44054 GLEAN mRNA 285014 288462 0.892591 - . ID=CGI_10016169; scaffold44054 GLEAN promoter 288463 289462 0.892591 - . ID=CGI_10016169; scaffold44054 GLEAN mRNA 294317 303838 0.577406 - . ID=CGI_10016170; scaffold44054 TRF Tandem_Repeat 295328 295486 184 + . . scaffold44054 TRF Tandem_Repeat 300510 300557 51 + . . scaffold44054 TRF Tandem_Repeat 300513 300557 72 + . . scaffold44054 TRF Tandem_Repeat 303083 303138 105 + . . scaffold44054 GLEAN promoter 303839 304838 0.577406 - . ID=CGI_10016170; scaffold44054 TRF Tandem_Repeat 304007 304219 345 + . . scaffold44054 GLEAN promoter 305696 306695 0.999734 + . ID=CGI_10016171; scaffold44054 GLEAN mRNA 306696 317315 0.999734 + . ID=CGI_10016171; scaffold44054 WUBlastX LINE_RTE-X 307400 307654 49 - . . scaffold44054 WUBlastX LINE_RTE-X 307454 307654 67 - . . scaffold44054 WUBlastX LINE_RTE-X 307502 307654 75 - . . scaffold44054 WUBlastX LINE_RTE-X 307502 307684 56 - . . scaffold44054 TRF Tandem_Repeat 309507 310780 1517 + . . scaffold44054 TRF Tandem_Repeat 312158 312794 585 + . . scaffold44054 GLEAN mRNA 322403 334222 0.999917 - . ID=CGI_10016172; scaffold44054 TRF Tandem_Repeat 324864 324973 211 + . . scaffold44054 TRF Tandem_Repeat 328288 328523 346 + . . scaffold44054 TRF Tandem_Repeat 328904 329081 133 + . . scaffold44054 TRF Tandem_Repeat 331598 332729 1012 + . . scaffold44054 GLEAN promoter 334223 335222 0.999917 - . ID=CGI_10016172; scaffold44054 GLEAN promoter 335601 336600 0.959374 + . ID=CGI_10016173; scaffold44054 GLEAN mRNA 336601 339752 0.959374 + . ID=CGI_10016173; scaffold44054 TRF Tandem_Repeat 338348 338578 304 + . . scaffold44054 TRF Tandem_Repeat 348395 348513 95 + . . scaffold44054 TRF Tandem_Repeat 348655 348876 124 + . . scaffold44054 TRF Tandem_Repeat 350037 350085 98 + . . scaffold44054 TRF Tandem_Repeat 350913 351063 123 + . . scaffold44054 GLEAN promoter 351028 352027 0.959374 + . ID=CGI_10016174; scaffold44054 GLEAN mRNA 352028 356167 0.959374 + . ID=CGI_10016174; scaffold44054 GLEAN mRNA 366961 374246 0.888316 - . ID=CGI_10016175; scaffold44054 TRF Tandem_Repeat 372137 372181 90 + . . scaffold44054 GLEAN promoter 374247 375246 0.888316 - . ID=CGI_10016175; scaffold44054 TRF Tandem_Repeat 374884 374933 100 + . . scaffold44054 TRF Tandem_Repeat 376798 376866 138 + . . scaffold44054 TRF Tandem_Repeat 385437 385514 156 + . . scaffold44054 GLEAN mRNA 387999 388667 0.983116 - . ID=CGI_10016176; scaffold44054 GLEAN promoter 388668 389667 0.983116 - . ID=CGI_10016176; scaffold44054 GLEAN mRNA 390648 392771 0.999998 - . ID=CGI_10016177; scaffold44054 GLEAN promoter 392772 393771 0.999998 - . ID=CGI_10016177; scaffold44054 GLEAN promoter 396839 397838 0.999676 + . ID=CGI_10016178; scaffold44054 TRF Tandem_Repeat 397095 397137 86 + . . scaffold44054 GLEAN mRNA 397839 404891 0.999676 + . ID=CGI_10016178; scaffold44054 TRF Tandem_Repeat 400810 400887 156 + . . scaffold44054 TRF Tandem_Repeat 401092 401487 594 + . . scaffold44054 GLEAN promoter 419860 420859 1 + . ID=CGI_10016179; scaffold44054 GLEAN mRNA 420860 424359 1 + . ID=CGI_10016179; scaffold44054 GLEAN mRNA 428351 451614 0.884147 - . ID=CGI_10016180; scaffold44054 WUBlastX DNA_P 428880 429017 25 - . . scaffold44054 WUBlastX DNA_IS4EU 428916 429017 27 - . . scaffold44054 TRF Tandem_Repeat 436541 436584 88 + . . scaffold44054 TRF Tandem_Repeat 440828 440884 114 + . . scaffold44054 GLEAN promoter 451615 452614 0.884147 - . ID=CGI_10016180; scaffold44054 GLEAN promoter 452753 453752 1 + . ID=CGI_10016181; scaffold44054 GLEAN mRNA 453753 456814 1 + . ID=CGI_10016181; scaffold44064 WUBlastX DNA_TcMar-Tc1 101 967 317 + . . scaffold44064 WUBlastX DNA_TcMar-Tc1 963 1124 78 + . . scaffold44064 WUBlastX DNA_Harbinger 3358 3543 66 - . . scaffold44064 WUBlastX DNA_Harbinger 3537 3671 32 - . . scaffold44064 WUBlastX LTR_Pao 8003 8188 47 + . . scaffold44064 GLEAN mRNA 14609 37368 0.999675 - . ID=CGI_10016747; scaffold44064 TRF Tandem_Repeat 19821 19848 56 + . . scaffold44064 GLEAN promoter 37369 38368 0.999675 - . ID=CGI_10016747; scaffold44064 GLEAN promoter 40551 41550 1 + . ID=CGI_10016749; scaffold44064 GLEAN mRNA 41522 51301 0.999674 - . ID=CGI_10016748; scaffold44064 GLEAN mRNA 41551 41901 1 + . ID=CGI_10016749; scaffold44064 TRF Tandem_Repeat 44235 44268 68 + . . scaffold44064 GLEAN promoter 51302 52301 0.999674 - . ID=CGI_10016748; scaffold44064 TRF Tandem_Repeat 53865 53916 61 + . . scaffold44064 GLEAN promoter 54799 55798 1 + . ID=CGI_10016750; scaffold44064 GLEAN mRNA 55799 62300 1 + . ID=CGI_10016750; scaffold44064 TRF Tandem_Repeat 59379 59435 71 + . . scaffold44064 TRF Tandem_Repeat 59379 59435 89 + . . scaffold44064 GLEAN mRNA 68851 76191 1 - . ID=CGI_10016751; scaffold44064 GLEAN promoter 76192 77191 1 - . ID=CGI_10016751; scaffold44064 GLEAN promoter 76587 77586 0.999676 + . ID=CGI_10016752; scaffold44064 GLEAN mRNA 77587 79442 0.999676 + . ID=CGI_10016752; scaffold44064 GLEAN mRNA 80546 93621 0.641533 - . ID=CGI_10016753; scaffold44064 TRF Tandem_Repeat 82248 82911 1019 + . . scaffold44064 GLEAN promoter 93622 94621 0.641533 - . ID=CGI_10016753; scaffold44064 TRF Tandem_Repeat 94149 94206 61 + . . scaffold44064 GLEAN mRNA 97153 103357 0.999809 - . ID=CGI_10016754; scaffold44064 GLEAN promoter 103358 104357 0.999809 - . ID=CGI_10016754; scaffold44064 GLEAN promoter 103624 104623 0.789576 + . ID=CGI_10016755; scaffold44064 GLEAN mRNA 104624 120677 0.789576 + . ID=CGI_10016755; scaffold44064 GLEAN mRNA 120842 136443 0.996612 - . ID=CGI_10016756; scaffold44064 GLEAN promoter 136444 137443 0.996612 - . ID=CGI_10016756; scaffold44064 GLEAN mRNA 136540 138975 0.889633 - . ID=CGI_10016757; scaffold44064 GLEAN promoter 138976 139975 0.889633 - . ID=CGI_10016757; scaffold44064 GLEAN mRNA 146010 151943 0.996552 - . ID=CGI_10016758; scaffold44064 TRF Tandem_Repeat 146815 146871 114 + . . scaffold44064 TRF Tandem_Repeat 150909 150943 70 + . . scaffold44064 GLEAN promoter 151944 152943 0.996552 - . ID=CGI_10016758; scaffold44064 TRF Tandem_Repeat 152378 152427 77 + . . scaffold44064 TRF Tandem_Repeat 152380 152427 73 + . . scaffold44064 TRF Tandem_Repeat 154409 154555 113 + . . scaffold44064 TRF Tandem_Repeat 154479 154597 91 + . . scaffold44064 TRF Tandem_Repeat 155238 155331 125 + . . scaffold44064 TRF Tandem_Repeat 155378 155466 119 + . . scaffold44064 GLEAN promoter 157527 158526 0.61517 + . ID=CGI_10016759; scaffold44064 GLEAN mRNA 158527 161995 0.61517 + . ID=CGI_10016759; scaffold44064 GLEAN promoter 179277 180276 0.999209 + . ID=CGI_10016760; scaffold44064 GLEAN mRNA 180277 188770 0.999209 + . ID=CGI_10016760; scaffold44064 TRF Tandem_Repeat 183333 183383 93 + . . scaffold44064 TRF Tandem_Repeat 188774 189061 371 + . . scaffold44064 GLEAN mRNA 191273 194167 0.99428 - . ID=CGI_10016761; scaffold44064 GLEAN promoter 193299 194298 0.999875 + . ID=CGI_10016762; scaffold44064 GLEAN promoter 194168 195167 0.99428 - . ID=CGI_10016761; scaffold44064 GLEAN mRNA 194299 202712 0.999875 + . ID=CGI_10016762; scaffold44064 GLEAN mRNA 201756 215782 0.297034 - . ID=CGI_10016763; scaffold44064 WUBlastX LINE_CR1 214815 215351 21 + . . scaffold44064 WUBlastX LINE_CR1 214863 215270 73 + . . scaffold44064 WUBlastX LINE_CR1 215306 215734 47 + . . scaffold44064 WUBlastX LINE_CR1 215321 215455 51 + . . scaffold44064 GLEAN promoter 215783 216782 0.297034 - . ID=CGI_10016763; scaffold44064 GLEAN promoter 216164 217163 1 + . ID=CGI_10016764; scaffold44064 TRF Tandem_Repeat 216180 216222 68 + . . scaffold44064 GLEAN mRNA 217164 234293 1 + . ID=CGI_10016764; scaffold44064 TRF Tandem_Repeat 217494 217591 72 + . . scaffold44064 GLEAN mRNA 231432 244846 0.590266 - . ID=CGI_10016765; scaffold44064 TRF Tandem_Repeat 242809 242842 68 + . . scaffold44064 GLEAN promoter 244847 245846 0.590266 - . ID=CGI_10016765; scaffold44064 TRF Tandem_Repeat 247185 247233 98 + . . scaffold44064 GLEAN promoter 250986 251985 0.999897 + . ID=CGI_10016766; scaffold44064 GLEAN mRNA 251986 272720 0.999897 + . ID=CGI_10016766; scaffold44064 TRF Tandem_Repeat 266501 266547 94 + . . scaffold44064 TRF Tandem_Repeat 270596 270705 123 + . . scaffold44064 TRF Tandem_Repeat 275237 275275 69 + . . scaffold44064 GLEAN promoter 275970 276969 0.991197 + . ID=CGI_10016767; scaffold44064 GLEAN mRNA 276970 281778 0.991197 + . ID=CGI_10016767; scaffold44064 TRF Tandem_Repeat 277513 277554 84 + . . scaffold44064 TRF Tandem_Repeat 279273 279471 213 + . . scaffold44064 GLEAN mRNA 283236 291340 1 - . ID=CGI_10016768; scaffold44064 GLEAN promoter 291341 292340 1 - . ID=CGI_10016768; scaffold44064 GLEAN mRNA 297996 304169 0.999996 - . ID=CGI_10016769; scaffold44064 GLEAN promoter 304170 305169 0.999996 - . ID=CGI_10016769; scaffold44064 GLEAN promoter 306461 307460 0.777732 + . ID=CGI_10016770; scaffold44064 GLEAN mRNA 307461 308735 0.777732 + . ID=CGI_10016770; scaffold44064 GLEAN mRNA 310326 312357 0.999879 - . ID=CGI_10016771; scaffold44064 GLEAN promoter 312358 313357 0.999879 - . ID=CGI_10016771; scaffold44064 GLEAN mRNA 314951 320322 0.841386 - . ID=CGI_10016772; scaffold44064 GLEAN promoter 320323 321322 0.841386 - . ID=CGI_10016772; scaffold44064 GLEAN mRNA 322483 323136 1 - . ID=CGI_10016773; scaffold44064 GLEAN promoter 323137 324136 1 - . ID=CGI_10016773; scaffold44064 GLEAN mRNA 330257 330951 1 - . ID=CGI_10016774; scaffold44064 GLEAN promoter 330952 331951 1 - . ID=CGI_10016774; scaffold44064 GLEAN mRNA 331626 352468 0.861916 - . ID=CGI_10016775; scaffold44064 TRF Tandem_Repeat 349352 349394 86 + . . scaffold44064 TRF Tandem_Repeat 349571 349620 77 + . . scaffold44064 GLEAN promoter 352469 353468 0.861916 - . ID=CGI_10016775; scaffold44064 TRF Tandem_Repeat 362782 362848 80 + . . scaffold44064 TRF Tandem_Repeat 365314 365380 80 + . . scaffold44064 TRF Tandem_Repeat 377985 378022 67 + . . scaffold44064 TRF Tandem_Repeat 378050 378080 62 + . . scaffold44064 TRF Tandem_Repeat 379451 379508 109 + . . scaffold44064 TRF Tandem_Repeat 384090 384145 112 + . . scaffold44064 TRF Tandem_Repeat 384612 384657 92 + . . scaffold44064 GLEAN mRNA 385748 393065 0.861916 - . ID=CGI_10016776; scaffold44064 TRF Tandem_Repeat 387423 387454 64 + . . scaffold44064 TRF Tandem_Repeat 388688 389955 1654 + . . scaffold44064 GLEAN promoter 393066 394065 0.861916 - . ID=CGI_10016776; scaffold44064 WUBlastX LINE_L2 394332 394778 156 + . . scaffold44064 GLEAN mRNA 397401 400455 0.999791 - . ID=CGI_10016777; scaffold44064 GLEAN promoter 400456 401455 0.999791 - . ID=CGI_10016777; scaffold44064 GLEAN mRNA 403826 404295 1 - . ID=CGI_10016778; scaffold44064 GLEAN promoter 404296 405295 1 - . ID=CGI_10016778; scaffold44064 GLEAN mRNA 404503 419237 0.999666 - . ID=CGI_10016779; scaffold44064 TRF Tandem_Repeat 412034 413181 1400 + . . scaffold44064 TRF Tandem_Repeat 414284 414340 114 + . . scaffold44064 GLEAN promoter 419238 420237 0.999666 - . ID=CGI_10016779; scaffold44064 GLEAN promoter 423788 424787 1 + . ID=CGI_10016780; scaffold44064 GLEAN mRNA 424788 427670 1 + . ID=CGI_10016780; scaffold44064 GLEAN mRNA 428937 432558 0.986244 - . ID=CGI_10016781; scaffold44064 TRF Tandem_Repeat 429253 429446 109 + . . scaffold44064 GLEAN promoter 432559 433558 0.986244 - . ID=CGI_10016781; scaffold44064 GLEAN promoter 432933 433932 0.44627 + . ID=CGI_10016782; scaffold44064 GLEAN mRNA 433933 435975 0.44627 + . ID=CGI_10016782; scaffold44064 GLEAN mRNA 435884 450707 0.738334 - . ID=CGI_10016783; scaffold44064 TRF Tandem_Repeat 442662 442697 65 + . . scaffold44064 GLEAN promoter 445951 446950 0.702389 + . ID=CGI_10016784; scaffold44064 GLEAN mRNA 446951 453577 0.702389 + . ID=CGI_10016784; scaffold44064 GLEAN promoter 450708 451707 0.738334 - . ID=CGI_10016783; scaffold44064 GLEAN mRNA 454475 459509 0.557967 - . ID=CGI_10016785; scaffold44064 GLEAN promoter 455029 456028 0.989529 + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 455601 455636 63 + . . scaffold44064 GLEAN mRNA 456029 475095 0.989529 + . ID=CGI_10016786; scaffold44064 TRF Tandem_Repeat 459098 459256 112 + . . scaffold44064 GLEAN promoter 459510 460509 0.557967 - . ID=CGI_10016785; scaffold44064 GLEAN mRNA 459640 479605 0.642723 - . ID=CGI_10016787; scaffold44064 TRF Tandem_Repeat 461217 461269 97 + . . scaffold44064 TRF Tandem_Repeat 462403 462447 83 + . . scaffold44064 TRF Tandem_Repeat 472303 472351 53 + . . scaffold44064 TRF Tandem_Repeat 472393 472525 86 + . . scaffold44064 TRF Tandem_Repeat 472471 472551 63 + . . scaffold44064 GLEAN promoter 479606 480605 0.642723 - . ID=CGI_10016787; scaffold44098 GLEAN mRNA 4117 10851 1 - . ID=CGI_10017694; scaffold44098 GLEAN promoter 10852 11851 1 - . ID=CGI_10017694; scaffold44098 TRF Tandem_Repeat 11815 11881 59 + . . scaffold44098 TRF Tandem_Repeat 15317 15343 54 + . . scaffold44098 TRF Tandem_Repeat 15636 15664 58 + . . scaffold44098 WUBlastX LINE_L2 17348 17644 52 + . . scaffold44098 TRF Tandem_Repeat 18386 18423 51 + . . scaffold44098 TRF Tandem_Repeat 20387 20606 316 + . . scaffold44098 TRF Tandem_Repeat 21337 21429 64 + . . scaffold44098 TRF Tandem_Repeat 24196 24243 71 + . . scaffold44098 GLEAN mRNA 26731 41881 0.998075 - . ID=CGI_10017695; scaffold44098 TRF Tandem_Repeat 30171 31154 1227 + . . scaffold44098 TRF Tandem_Repeat 30908 31054 59 + . . scaffold44098 TRF Tandem_Repeat 31543 32146 806 + . . scaffold44098 TRF Tandem_Repeat 32081 32188 105 + . . scaffold44098 TRF Tandem_Repeat 33453 33638 103 + . . scaffold44098 TRF Tandem_Repeat 33461 33973 187 + . . scaffold44098 TRF Tandem_Repeat 33461 33620 119 + . . scaffold44098 TRF Tandem_Repeat 33739 33973 301 + . . scaffold44098 TRF Tandem_Repeat 37130 37236 79 + . . scaffold44098 TRF Tandem_Repeat 37146 37202 60 + . . scaffold44098 TRF Tandem_Repeat 37173 37235 63 + . . scaffold44098 GLEAN promoter 40754 41753 1 + . ID=CGI_10017696; scaffold44098 GLEAN mRNA 41754 47393 1 + . ID=CGI_10017696; scaffold44098 GLEAN promoter 41882 42881 0.998075 - . ID=CGI_10017695; scaffold44098 GLEAN mRNA 47753 50977 0.619418 - . ID=CGI_10017697; scaffold44098 GLEAN promoter 50978 51977 0.619418 - . ID=CGI_10017697; scaffold44098 GLEAN mRNA 54494 55996 0.999661 - . ID=CGI_10017698; scaffold44098 GLEAN promoter 55997 56996 0.999661 - . ID=CGI_10017698; scaffold44098 TRF Tandem_Repeat 74242 74353 138 + . . scaffold44098 GLEAN mRNA 75189 75353 0.776794 - . ID=CGI_10017700; scaffold44098 GLEAN promoter 75354 76353 0.776794 - . ID=CGI_10017700; scaffold44098 WUBlastX LINE_RTE-X 78754 79116 91 - . . scaffold44098 WUBlastX LINE_RTE-X 79076 79231 44 - . . scaffold44098 TRF Tandem_Repeat 82506 82540 70 + . . scaffold44098 TRF Tandem_Repeat 90557 90604 78 + . . scaffold44098 GLEAN promoter 94889 95888 0.999661 + . ID=CGI_10017701; scaffold44098 GLEAN mRNA 95889 97046 0.999661 + . ID=CGI_10017701; scaffold44098 TRF Tandem_Repeat 110961 111026 116 + . . scaffold44098 TRF Tandem_Repeat 110964 111025 72 + . . scaffold44098 TRF Tandem_Repeat 112744 112935 200 + . . scaffold44098 TRF Tandem_Repeat 112756 112940 104 + . . scaffold44098 GLEAN mRNA 115382 139154 0.999935 - . ID=CGI_10017702; scaffold44098 WUBlastX LINE_RTE-X 119701 119952 28 - . . scaffold44098 WUBlastX LINE_RTE-X 119806 119952 61 - . . scaffold44098 TRF Tandem_Repeat 135829 135957 125 + . . scaffold44098 GLEAN promoter 138499 139498 0.999675 + . ID=CGI_10017703; scaffold44098 GLEAN promoter 139155 140154 0.999935 - . ID=CGI_10017702; scaffold44098 GLEAN mRNA 139499 143564 0.999675 + . ID=CGI_10017703; scaffold44098 GLEAN mRNA 146594 150731 1 - . ID=CGI_10017704; scaffold44098 GLEAN promoter 150732 151731 1 - . ID=CGI_10017704; scaffold44098 GLEAN promoter 162319 163318 1 + . ID=CGI_10017705; scaffold44098 GLEAN mRNA 163319 167512 1 + . ID=CGI_10017705; scaffold44098 WUBlastX DNA_hAT 164861 165169 114 + . . scaffold44098 WUBlastX DNA_hAT 165424 165624 65 + . . scaffold44098 WUBlastX DNA_hAT 166700 167104 194 + . . scaffold44098 WUBlastX DNA_hAT 166709 167257 161 + . . scaffold44098 GLEAN mRNA 169434 170705 0.531613 - . ID=CGI_10017706; scaffold44098 GLEAN promoter 170706 171705 0.531613 - . ID=CGI_10017706; scaffold44098 GLEAN mRNA 173505 177333 1 - . ID=CGI_10017707; scaffold44098 GLEAN promoter 177334 178333 1 - . ID=CGI_10017707; scaffold44098 GLEAN promoter 187555 188554 0.544557 + . ID=CGI_10017708; scaffold44098 GLEAN mRNA 188555 213785 0.544557 + . ID=CGI_10017708; scaffold44098 WUBlastX LINE_CR1 194094 194237 32 + . . scaffold44098 WUBlastX LINE_L2 194269 195423 87 + . . scaffold44098 WUBlastX LINE_CR1 194551 195573 431 + . . scaffold44098 WUBlastX LINE_CR1 194641 195459 476 + . . scaffold44098 WUBlastX LINE_CR1 195545 196384 237 + . . scaffold44098 TRF Tandem_Repeat 202269 202332 58 + . . scaffold44098 TRF Tandem_Repeat 202270 202340 63 + . . scaffold44098 TRF Tandem_Repeat 202282 202328 67 + . . scaffold44098 GLEAN promoter 230384 231383 0.554744 + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 230830 230913 70 + . . scaffold44098 GLEAN mRNA 231384 242695 0.554744 + . ID=CGI_10017709; scaffold44098 TRF Tandem_Repeat 238203 238356 308 + . . scaffold44098 TRF Tandem_Repeat 238333 238787 408 + . . scaffold44098 TRF Tandem_Repeat 238442 238987 447 + . . scaffold44098 TRF Tandem_Repeat 238619 238958 484 + . . scaffold44098 TRF Tandem_Repeat 238822 238987 314 + . . scaffold44098 TRF Tandem_Repeat 240606 240865 337 + . . scaffold44098 GLEAN mRNA 245690 249933 0.951084 - . ID=CGI_10017710; scaffold44098 GLEAN promoter 249934 250933 0.951084 - . ID=CGI_10017710; scaffold44098 GLEAN promoter 255423 256422 0.444496 + . ID=CGI_10017711; scaffold44098 GLEAN mRNA 256423 271902 0.444496 + . ID=CGI_10017711; scaffold44098 TRF Tandem_Repeat 262634 262792 291 + . . scaffold44098 TRF Tandem_Repeat 262875 262912 53 + . . scaffold44098 TRF Tandem_Repeat 263080 264726 2230 + . . scaffold44098 TRF Tandem_Repeat 263080 264726 2144 + . . scaffold44098 GLEAN mRNA 276349 276969 0.836238 - . ID=CGI_10017712; scaffold44098 GLEAN promoter 276970 277969 0.836238 - . ID=CGI_10017712; scaffold44098 TRF Tandem_Repeat 279793 279870 95 + . . scaffold44098 TRF Tandem_Repeat 279793 279899 70 + . . scaffold44098 TRF Tandem_Repeat 280757 280807 102 + . . scaffold44098 TRF Tandem_Repeat 281757 281826 52 + . . scaffold44098 TRF Tandem_Repeat 281769 281842 60 + . . scaffold44098 WUBlastX LINE_RTE-X 283510 285465 968 - . . scaffold44098 GLEAN mRNA 293822 315160 0.839068 - . ID=CGI_10017713; scaffold44098 TRF Tandem_Repeat 313251 313382 219 + . . scaffold44098 GLEAN promoter 315161 316160 0.839068 - . ID=CGI_10017713; scaffold44098 GLEAN mRNA 316260 334165 0.540249 - . ID=CGI_10017714; scaffold44098 TRF Tandem_Repeat 321264 321389 145 + . . scaffold44098 GLEAN promoter 334166 335165 0.540249 - . ID=CGI_10017714; scaffold44098 GLEAN promoter 334623 335622 0.834804 + . ID=CGI_10017715; scaffold44098 GLEAN mRNA 335623 343512 0.834804 + . ID=CGI_10017715; scaffold44098 TRF Tandem_Repeat 337425 337451 54 + . . scaffold44098 GLEAN mRNA 346009 350858 1 - . ID=CGI_10017716; scaffold44098 GLEAN promoter 350859 351858 1 - . ID=CGI_10017716; scaffold44098 WUBlastX LINE_RTE-BovB 352388 352588 72 - . . scaffold44098 WUBlastX LINE_RTE-BovB 352400 352567 117 - . . scaffold44098 TRF Tandem_Repeat 356572 357410 907 + . . scaffold44098 TRF Tandem_Repeat 356572 357410 1015 + . . scaffold44098 TRF Tandem_Repeat 357992 359472 2890 + . . scaffold44098 GLEAN promoter 369940 370939 0.889819 + . ID=CGI_10017717; scaffold44098 GLEAN mRNA 370940 389812 0.889819 + . ID=CGI_10017717; scaffold44098 GLEAN promoter 393150 394149 1 + . ID=CGI_10017718; scaffold44098 GLEAN mRNA 394150 396502 1 + . ID=CGI_10017718; scaffold44098 GLEAN mRNA 398375 407477 1 - . ID=CGI_10017719; scaffold44098 GLEAN promoter 406777 407776 0.999828 + . ID=CGI_10017720; scaffold44098 GLEAN promoter 407478 408477 1 - . ID=CGI_10017719; scaffold44098 GLEAN mRNA 407777 422011 0.999828 + . ID=CGI_10017720; scaffold44098 GLEAN promoter 422014 423013 0.483333 + . ID=CGI_10017721; scaffold44098 TRF Tandem_Repeat 422757 422788 64 + . . scaffold44098 GLEAN mRNA 423014 448113 0.483333 + . ID=CGI_10017721; scaffold44098 GLEAN mRNA 427931 432777 0.999676 - . ID=CGI_10017722; scaffold44098 GLEAN promoter 432778 433777 0.999676 - . ID=CGI_10017722; scaffold44098 TRF Tandem_Repeat 437105 437158 108 + . . scaffold44098 TRF Tandem_Repeat 438865 438909 90 + . . scaffold44098 TRF Tandem_Repeat 439404 439438 70 + . . scaffold44098 TRF Tandem_Repeat 439765 439817 88 + . . scaffold44098 TRF Tandem_Repeat 441433 441681 336 + . . scaffold44098 GLEAN mRNA 451364 461419 0.999675 - . ID=CGI_10017723; scaffold44098 TRF Tandem_Repeat 456785 458670 939 + . . scaffold44098 TRF Tandem_Repeat 456831 458670 2137 + . . scaffold44098 GLEAN promoter 461420 462419 0.999675 - . ID=CGI_10017723; scaffold44098 GLEAN promoter 466587 467586 1 + . ID=CGI_10017724; scaffold44098 GLEAN mRNA 467587 467892 1 + . ID=CGI_10017724; scaffold44098 TRF Tandem_Repeat 468661 469107 148 + . . scaffold44098 TRF Tandem_Repeat 468661 469198 497 + . . scaffold44098 TRF Tandem_Repeat 469057 469282 149 + . . scaffold44098 TRF Tandem_Repeat 469058 469272 119 + . . scaffold44098 TRF Tandem_Repeat 469156 469303 131 + . . scaffold44098 TRF Tandem_Repeat 470974 471224 324 + . . scaffold44098 GLEAN promoter 472193 473192 0.999615 + . ID=CGI_10017725; scaffold44098 GLEAN mRNA 473193 488352 0.999615 + . ID=CGI_10017725; scaffold44098 TRF Tandem_Repeat 473360 473414 110 + . . scaffold44098 TRF Tandem_Repeat 480675 480722 96 + . . scaffold44098 TRF Tandem_Repeat 484068 484331 315 + . . scaffold44098 TRF Tandem_Repeat 485802 486171 389 + . . scaffold44098 TRF Tandem_Repeat 485802 486171 443 + . . scaffold44098 GLEAN mRNA 490505 492839 0.999672 - . ID=CGI_10017726; scaffold44098 GLEAN promoter 492176 493175 0.999415 + . ID=CGI_10017727; scaffold44098 GLEAN promoter 492840 493839 0.999672 - . ID=CGI_10017726; scaffold44098 GLEAN mRNA 493176 496547 0.999415 + . ID=CGI_10017727; scaffold44098 GLEAN mRNA 497807 498583 0.959203 - . ID=CGI_10017728; scaffold44098 GLEAN promoter 498584 499583 0.959203 - . ID=CGI_10017728; scaffold44098 WUBlastX LINE_L1-Tx1 498858 499499 85 + . . scaffold44098 WUBlastX LINE_L1-Tx1 499469 499813 70 + . . scaffold44098 WUBlastX LINE_RTE-BovB 500666 501301 64 - . . scaffold44098 WUBlastX LINE_RTE-BovB 500666 500818 88 - . . scaffold44098 WUBlastX LINE_RTE-BovB 500821 501429 47 - . . scaffold44098 GLEAN mRNA 509743 514690 0.993254 - . ID=CGI_10017729; scaffold44098 GLEAN promoter 514691 515690 0.993254 - . ID=CGI_10017729; scaffold44098 GLEAN mRNA 514859 515877 1 - . ID=CGI_10017730; scaffold44098 GLEAN promoter 515878 516877 1 - . ID=CGI_10017730; scaffold441 WUBlastX LTR_Ngaro 4962 5597 52 - . . scaffold441 WUBlastX LTR_Ngaro 5141 5836 103 - . . scaffold441 TRF Tandem_Repeat 16523 16553 62 + . . scaffold441 GLEAN promoter 18899 19898 0.999676 + . ID=CGI_10003712; scaffold441 GLEAN mRNA 19899 22354 0.999676 + . ID=CGI_10003712; scaffold441 TRF Tandem_Repeat 40896 41005 57 + . . scaffold441 WUBlastX DNA_IS4EU 43224 43643 81 + . . scaffold441 WUBlastX DNA_IS4EU 43670 43837 106 + . . scaffold441 WUBlastX DNA_IS4EU 43825 43962 76 + . . scaffold441 WUBlastX LTR_DIRS 44548 45000 297 - . . scaffold441 WUBlastX LTR_DIRS 44967 45485 128 - . . scaffold441 TRF Tandem_Repeat 45723 45857 189 + . . scaffold441 WUBlastX LTR_DIRS 46110 46304 107 - . . scaffold441 WUBlastX LTR_DIRS 46319 47479 256 - . . scaffold441 WUBlastX LTR_DIRS 46881 48107 76 - . . scaffold441 WUBlastX LTR_DIRS 46887 47903 223 - . . scaffold441 WUBlastX DNA_IS4EU 48481 48651 100 + . . scaffold441 WUBlastX DNA_IS4EU 49541 49690 24 - . . scaffold441 WUBlastX DNA_IS4EU 49565 49690 35 - . . scaffold441 WUBlastX DNA_IS4EU 49639 50223 118 - . . scaffold441 WUBlastX DNA_Kolobok-IS4 49690 50712 89 - . . scaffold441 WUBlastX DNA_IS4EU 50940 51119 28 - . . scaffold441 TRF Tandem_Repeat 60288 60418 58 + . . scaffold441 TRF Tandem_Repeat 60288 60412 71 + . . scaffold441 WUBlastX LINE_RTE-X 78040 78609 149 - . . scaffold442 GLEAN mRNA 651 9361 0.728396 - . ID=CGI_10005512; scaffold442 TRF Tandem_Repeat 9107 9150 88 + . . scaffold442 GLEAN promoter 9362 10361 0.728396 - . ID=CGI_10005512; scaffold442 WUBlastX DNA_Kolobok-IS4 13118 13321 49 + . . scaffold442 WUBlastX DNA_P 16508 16660 30 + . . scaffold442 WUBlastX DNA_P 16677 16856 122 + . . scaffold442 WUBlastX DNA_P 17003 17122 46 + . . scaffold442 WUBlastX DNA_P 17030 17191 27 + . . scaffold442 WUBlastX DNA_P 17277 17450 121 + . . scaffold442 WUBlastX DNA_P 17471 17818 78 + . . scaffold442 WUBlastX DNA_P 17609 17818 100 + . . scaffold442 WUBlastX DNA_P 17925 18053 40 + . . scaffold442 WUBlastX DNA_P 18041 18274 101 + . . scaffold442 WUBlastX DNA_P 18530 18625 49 + . . scaffold442 WUBlastX DNA_P 18786 18881 32 + . . scaffold442 WUBlastX DNA_P 18844 18951 60 + . . scaffold442 WUBlastX DNA_P 19556 19693 44 + . . scaffold442 TRF Tandem_Repeat 23843 23881 78 + . . scaffold442 GLEAN mRNA 36777 37755 0.999032 - . ID=CGI_10005513; scaffold442 GLEAN promoter 37756 38755 0.999032 - . ID=CGI_10005513; scaffold442 WUBlastX LTR_Gypsy 40732 40887 103 - . . scaffold442 WUBlastX LTR_Gypsy 45161 46081 126 - . . scaffold442 WUBlastX LTR_Gypsy 45323 46096 433 - . . scaffold442 WUBlastX LTR_Gypsy 45431 46084 641 - . . scaffold442 WUBlastX LTR_Gypsy 45764 46177 90 - . . scaffold442 WUBlastX DNA_Kolobok-IS4 47897 48241 33 + . . scaffold442 WUBlastX DNA_IS4EU 48062 48241 36 + . . scaffold442 WUBlastX DNA_IS4EU 48107 48241 62 + . . scaffold442 WUBlastX DNA_IS4EU 48325 48423 61 + . . scaffold442 WUBlastX LINE_Penelope 66820 67533 314 - . . scaffold442 WUBlastX DNA_TcMar-Marin 68069 68149 26 + . . scaffold442 WUBlastX DNA_TcMar-Marin 68245 68427 77 + . . scaffold442 TRF Tandem_Repeat 68677 68722 92 + . . scaffold442 WUBlastX LINE_Penelope 68745 68954 76 + . . scaffold442 GLEAN promoter 78786 79785 0.999397 + . ID=CGI_10005515; scaffold442 WUBlastX LINE_L2 79564 80046 78 + . . scaffold442 WUBlastX LINE_CR1-L2 79702 80058 109 + . . scaffold442 GLEAN mRNA 79786 80136 0.999397 + . ID=CGI_10005515; scaffold442 WUBlastX LINE_L1-Tx1 80730 81356 286 + . . scaffold442 WUBlastX LINE_L1-Tx1 81292 82449 642 + . . scaffold442 WUBlastX LINE_L1 82437 83471 241 + . . scaffold442 WUBlastX LINE_L1-Tx1 82437 83297 265 + . . scaffold442 WUBlastX LINE_L1-Tx1 82446 83165 465 + . . scaffold442 WUBlastX LINE_L1-Tx1 83232 83855 154 + . . scaffold442 WUBlastX LINE_L1-Tx1 83262 83963 56 + . . scaffold442 TRF Tandem_Repeat 97321 97367 94 + . . scaffold442 WUBlastX LINE_RTE-BovB 103010 103423 41 - . . scaffold442 WUBlastX LINE_RTE-BovB 103079 103456 116 - . . scaffold442 WUBlastX LINE_RTE-BovB 103082 103675 54 - . . scaffold442 WUBlastX LINE_RTE-BovB 103790 104299 85 - . . scaffold442 TRF Tandem_Repeat 104403 104435 59 + . . scaffold442 TRF Tandem_Repeat 104442 104533 157 + . . scaffold442 WUBlastX LINE_RTE-BovB 108370 108519 37 - . . scaffold442 WUBlastX LINE_RTE-BovB 108422 108721 109 - . . scaffold442 WUBlastX LINE_RTE-BovB 108491 108775 115 - . . scaffold442 WUBlastX LINE_RTE-BovB 108491 108832 99 - . . scaffold442 WUBlastX LINE_RTE-BovB 108491 108721 130 - . . scaffold442 WUBlastX LINE_RTE-RTE 108491 108895 56 - . . scaffold442 TRF Tandem_Repeat 122269 122322 81 + . . scaffold442 TRF Tandem_Repeat 123759 123829 142 + . . scaffold442 TRF Tandem_Repeat 124220 124270 57 + . . scaffold442 TRF Tandem_Repeat 125482 125541 57 + . . scaffold443 TRF Tandem_Repeat 46271 46305 70 + . . scaffold443 TRF Tandem_Repeat 50913 50943 53 + . . scaffold443 TRF Tandem_Repeat 51387 51454 50 + . . scaffold443 TRF Tandem_Repeat 54903 56055 1529 + . . scaffold443 TRF Tandem_Repeat 56225 56259 61 + . . scaffold443 TRF Tandem_Repeat 56850 56878 51 + . . scaffold443 TRF Tandem_Repeat 60469 60497 58 + . . scaffold443 TRF Tandem_Repeat 84957 84990 68 + . . scaffold443 WUBlastX LTR_Gypsy 98237 98695 39 - . . scaffold443 WUBlastX LTR_Gypsy 98441 98677 41 - . . scaffold443 WUBlastX LTR_Gypsy-Cigr 98537 98668 71 - . . scaffold443 WUBlastX LTR_Gypsy 98707 99249 295 - . . scaffold443 WUBlastX LTR_Gypsy-Cigr 99242 100531 194 - . . scaffold443 WUBlastX LTR_Gypsy-Cigr 99242 99667 237 - . . scaffold443 WUBlastX LTR_Gypsy 99993 100307 210 - . . scaffold443 WUBlastX LTR_ERV1 101005 101406 25 - . . scaffold443 WUBlastX LTR_Gypsy 101095 101439 181 - . . scaffold443 WUBlastX LTR_Gypsy-Cigr 101158 101439 240 - . . scaffold443 WUBlastX LTR_Gypsy 101433 102872 560 - . . scaffold443 WUBlastX LTR_Gypsy 102288 102980 26 - . . scaffold443 WUBlastX LTR_Gypsy-Cigr 103010 103585 66 - . . scaffold443 TRF Tandem_Repeat 104882 104913 64 + . . scaffold443 TRF Tandem_Repeat 104936 104968 66 + . . scaffold443 TRF Tandem_Repeat 105102 105126 50 + . . scaffold443 WUBlastX LTR_Gypsy 114362 114964 59 + . . scaffold443 WUBlastX LTR_Gypsy 114491 115165 77 + . . scaffold443 WUBlastX LTR_Gypsy 114530 114994 130 + . . scaffold443 WUBlastX LTR_Gypsy 115151 115183 22 + . . scaffold443 WUBlastX LTR_Gypsy 115381 115584 64 + . . scaffold443 WUBlastX LTR_Gypsy 115474 115614 56 + . . scaffold443 WUBlastX LTR_Gypsy 115610 115681 27 + . . scaffold443 WUBlastX LTR_Gypsy 115655 115816 38 + . . scaffold443 WUBlastX LTR_Gypsy 115736 117691 1052 + . . scaffold443 WUBlastX LTR_Gypsy 116144 117679 1112 + . . scaffold443 WUBlastX LTR_Gypsy 117044 117817 451 + . . scaffold443 WUBlastX LTR_Gypsy 117820 117945 20 + . . scaffold443 WUBlastX LTR_Gypsy 117844 118407 381 + . . scaffold443 WUBlastX LTR_Gypsy 118404 119384 607 + . . scaffold443 TRF Tandem_Repeat 126407 126782 670 + . . scaffold443 GLEAN mRNA 128297 143175 0.99961 - . ID=CGI_10022762; scaffold443 GLEAN promoter 143176 144175 0.99961 - . ID=CGI_10022762; scaffold443 GLEAN mRNA 159604 162388 1 - . ID=CGI_10022763; scaffold443 TRF Tandem_Repeat 159961 159985 50 + . . scaffold443 GLEAN promoter 162389 163388 1 - . ID=CGI_10022763; scaffold443 WUBlastX LTR_DIRS 164986 165381 202 - . . scaffold443 WUBlastX LINE_Penelope 167252 167401 60 - . . scaffold443 TRF Tandem_Repeat 168898 168950 106 + . . scaffold443 TRF Tandem_Repeat 169553 169592 80 + . . scaffold443 GLEAN promoter 172412 173411 0.985105 + . ID=CGI_10022764; scaffold443 GLEAN mRNA 173412 176898 0.985105 + . ID=CGI_10022764; scaffold443 TRF Tandem_Repeat 199374 199419 92 + . . scaffold443 TRF Tandem_Repeat 206184 206225 57 + . . scaffold443 TRF Tandem_Repeat 207433 207489 105 + . . scaffold443 GLEAN promoter 213096 214095 0.835025 + . ID=CGI_10022765; scaffold443 GLEAN mRNA 214096 215735 0.835025 + . ID=CGI_10022765; scaffold443 TRF Tandem_Repeat 215908 215963 53 + . . scaffold443 TRF Tandem_Repeat 215917 215966 55 + . . scaffold443 GLEAN mRNA 219708 231842 1 - . ID=CGI_10022766; scaffold443 TRF Tandem_Repeat 228421 228882 735 + . . scaffold443 TRF Tandem_Repeat 229498 229566 108 + . . scaffold443 GLEAN promoter 231843 232842 1 - . ID=CGI_10022766; scaffold443 TRF Tandem_Repeat 235992 236042 102 + . . scaffold443 TRF Tandem_Repeat 240719 240782 128 + . . scaffold443 TRF Tandem_Repeat 241519 241738 189 + . . scaffold443 TRF Tandem_Repeat 241519 241738 278 + . . scaffold443 TRF Tandem_Repeat 243019 243280 443 + . . scaffold443 TRF Tandem_Repeat 243021 243280 331 + . . scaffold443 GLEAN mRNA 246362 252098 0.558032 - . ID=CGI_10022767; scaffold443 GLEAN promoter 252099 253098 0.558032 - . ID=CGI_10022767; scaffold443 TRF Tandem_Repeat 252112 253003 1252 + . . scaffold443 GLEAN promoter 259171 260170 0.451451 + . ID=CGI_10022768; scaffold443 TRF Tandem_Repeat 259437 259627 328 + . . scaffold443 GLEAN mRNA 260171 262022 0.451451 + . ID=CGI_10022768; scaffold443 TRF Tandem_Repeat 260971 261025 85 + . . scaffold443 WUBlastX LINE_RTE-X 270938 271102 26 - . . scaffold443 WUBlastX LINE_RTE-X 270974 271105 33 - . . scaffold443 WUBlastX LINE_RTE-X 271106 271942 84 - . . scaffold443 WUBlastX LINE_RTE-X 271322 271735 176 - . . scaffold443 WUBlastX LINE_RTE-X 271746 272447 167 - . . scaffold443 WUBlastX LINE_RTE-X 272040 272447 213 - . . scaffold443 WUBlastX LINE_RTE-X 272040 272567 191 - . . scaffold443 WUBlastX LINE_CR1 272067 272669 53 - . . scaffold443 TRF Tandem_Repeat 273514 273960 669 + . . scaffold443 WUBlastX LINE_RTE-X 281775 282068 44 + . . scaffold443 TRF Tandem_Repeat 289359 290305 1388 + . . scaffold443 GLEAN promoter 294280 295279 0.99906 + . ID=CGI_10022770; scaffold443 GLEAN mRNA 295280 301291 0.99906 + . ID=CGI_10022770; scaffold443 GLEAN promoter 300913 301912 0.999259 + . ID=CGI_10022771; scaffold443 TRF Tandem_Repeat 301682 301814 223 + . . scaffold443 GLEAN mRNA 301913 317743 0.999259 + . ID=CGI_10022771; scaffold443 TRF Tandem_Repeat 312223 312309 120 + . . scaffold443 TRF Tandem_Repeat 315714 315761 96 + . . scaffold443 GLEAN mRNA 321998 324773 0.836238 - . ID=CGI_10022772; scaffold443 GLEAN promoter 324774 325773 0.836238 - . ID=CGI_10022772; scaffold443 GLEAN promoter 327446 328445 0.775532 + . ID=CGI_10022773; scaffold443 GLEAN mRNA 328446 346814 0.775532 + . ID=CGI_10022773; scaffold443 TRF Tandem_Repeat 330618 330651 50 + . . scaffold443 TRF Tandem_Repeat 331243 332302 2093 + . . scaffold443 TRF Tandem_Repeat 332859 334181 1760 + . . scaffold443 TRF Tandem_Repeat 334427 335596 1701 + . . scaffold443 TRF Tandem_Repeat 336332 336728 396 + . . scaffold443 TRF Tandem_Repeat 337093 337127 70 + . . scaffold443 GLEAN mRNA 349856 361092 0.996236 - . ID=CGI_10022774; scaffold443 TRF Tandem_Repeat 354099 354239 221 + . . scaffold443 TRF Tandem_Repeat 354102 354323 258 + . . scaffold443 TRF Tandem_Repeat 354253 354383 154 + . . scaffold443 GLEAN promoter 361093 362092 0.996236 - . ID=CGI_10022774; scaffold443 TRF Tandem_Repeat 366915 366998 105 + . . scaffold443 TRF Tandem_Repeat 389473 389594 201 + . . scaffold443 TRF Tandem_Repeat 393107 393430 301 + . . scaffold443 TRF Tandem_Repeat 394130 394382 506 + . . scaffold443 TRF Tandem_Repeat 396954 397020 134 + . . scaffold443 TRF Tandem_Repeat 397772 398013 360 + . . scaffold443 TRF Tandem_Repeat 398971 399235 356 + . . scaffold443 GLEAN mRNA 402348 431121 0.212109 - . ID=CGI_10022775; scaffold443 TRF Tandem_Repeat 404803 404834 55 + . . scaffold443 WUBlastX LINE_RTE-X 408718 408921 65 - . . scaffold443 WUBlastX LINE_RTE-X 408733 409029 48 - . . scaffold443 WUBlastX LINE_RTE-X 408757 408933 72 - . . scaffold443 TRF Tandem_Repeat 418239 418278 80 + . . scaffold443 GLEAN promoter 431122 432121 0.212109 - . ID=CGI_10022775; scaffold443 TRF Tandem_Repeat 439045 439069 50 + . . scaffold443 WUBlastX DNA_Sola 443487 443720 47 + . . scaffold443 WUBlastX DNA_Sola 443887 444030 105 + . . scaffold443 WUBlastX DNA_Sola 445070 445234 36 + . . scaffold443 WUBlastX DNA_Sola 445097 445480 193 + . . scaffold443 WUBlastX DNA_Sola 445097 445588 84 + . . scaffold443 WUBlastX DNA_Sola 445589 445768 26 + . . scaffold443 WUBlastX DNA_Sola 445646 445732 42 + . . scaffold443 TRF Tandem_Repeat 448065 448149 138 + . . scaffold443 WUBlastX LINE_L1-Tx1 463380 463625 47 - . . scaffold443 WUBlastX LINE_L1-Tx1 463461 463631 50 - . . scaffold443 WUBlastX LINE_L1 463861 464112 20 - . . scaffold443 WUBlastX LINE_L1-Tx1 463939 464061 22 - . . scaffold443 WUBlastX LTR_Gypsy-Cigr 471816 472673 179 + . . scaffold443 WUBlastX LTR_Gypsy 471918 472619 232 + . . scaffold443 WUBlastX LINE_Penelope 474574 474726 35 + . . scaffold443 WUBlastX LINE_Penelope 474687 475184 172 + . . scaffold443 WUBlastX LINE_CR1 475367 475534 63 + . . scaffold443 WUBlastX LINE_L1 477824 478192 112 + . . scaffold443 WUBlastX LINE_L1 477968 478321 59 + . . scaffold443 TRF Tandem_Repeat 478479 479955 759 + . . scaffold443 WUBlastX DNA_IS4EU 480124 480582 54 - . . scaffold443 WUBlastX DNA_IS4EU 480199 480582 83 - . . scaffold443 WUBlastX DNA_IS4EU 480597 480905 96 - . . scaffold443 TRF Tandem_Repeat 488200 488341 239 + . . scaffold443 TRF Tandem_Repeat 488768 488825 66 + . . scaffold443 WUBlastX LTR_Gypsy 490597 490743 89 + . . scaffold443 WUBlastX LTR_Gypsy 490597 491010 84 + . . scaffold443 WUBlastX DNA_Crypton 491524 491802 118 + . . scaffold443 WUBlastX DNA_Crypton 492454 493047 72 + . . scaffold443 GLEAN promoter 511051 512050 0.694459 + . ID=CGI_10022776; scaffold443 GLEAN mRNA 512051 513715 0.694459 + . ID=CGI_10022776; scaffold443 GLEAN promoter 525530 526529 0.999642 + . ID=CGI_10022777; scaffold443 GLEAN mRNA 526530 528203 0.999642 + . ID=CGI_10022777; scaffold443 TRF Tandem_Repeat 539941 540268 533 + . . scaffold443 GLEAN promoter 546077 547076 0.731372 + . ID=CGI_10022778; scaffold443 GLEAN mRNA 547077 556445 0.731372 + . ID=CGI_10022778; scaffold443 WUBlastX LTR_Pao 559039 559275 20 - . . scaffold443 GLEAN mRNA 570487 575054 1 - . ID=CGI_10022779; scaffold443 TRF Tandem_Repeat 571514 572063 554 + . . scaffold443 TRF Tandem_Repeat 571514 572063 577 + . . scaffold443 GLEAN promoter 575055 576054 1 - . ID=CGI_10022779; scaffold443 TRF Tandem_Repeat 593149 593215 57 + . . scaffold443 TRF Tandem_Repeat 593177 593244 118 + . . scaffold443 GLEAN mRNA 597664 607572 1 - . ID=CGI_10022780; scaffold443 WUBlastX DNA_Crypton 599684 600181 24 + . . scaffold443 GLEAN promoter 607573 608572 1 - . ID=CGI_10022780; scaffold443 TRF Tandem_Repeat 609554 609666 63 + . . scaffold443 TRF Tandem_Repeat 618720 618821 141 + . . scaffold443 TRF Tandem_Repeat 618835 619631 1355 + . . scaffold443 TRF Tandem_Repeat 621843 621888 74 + . . scaffold443 GLEAN promoter 651644 652643 0.695587 + . ID=CGI_10022781; scaffold443 GLEAN mRNA 652644 655085 0.695587 + . ID=CGI_10022781; scaffold443 TRF Tandem_Repeat 665427 665470 88 + . . scaffold443 TRF Tandem_Repeat 669201 669314 90 + . . scaffold443 GLEAN mRNA 671433 680220 0.934337 - . ID=CGI_10022783; scaffold443 TRF Tandem_Repeat 674692 674744 88 + . . scaffold443 GLEAN promoter 680221 681220 0.934337 - . ID=CGI_10022783; scaffold443 GLEAN mRNA 681565 684430 0.999661 - . ID=CGI_10022784; scaffold443 GLEAN promoter 684431 685430 0.999661 - . ID=CGI_10022784; scaffold443 GLEAN promoter 687434 688433 0.184692 + . ID=CGI_10022785; scaffold443 GLEAN mRNA 688434 697669 0.184692 + . ID=CGI_10022785; scaffold443 TRF Tandem_Repeat 689074 689110 56 + . . scaffold443 TRF Tandem_Repeat 696301 696853 314 + . . scaffold443 TRF Tandem_Repeat 696397 696865 609 + . . scaffold443 TRF Tandem_Repeat 704257 704296 80 + . . scaffold443 TRF Tandem_Repeat 704367 704465 128 + . . scaffold443 TRF Tandem_Repeat 704544 704572 58 + . . scaffold443 WUBlastX LTR_ERV-Foamy 706310 706378 23 + . . scaffold443 WUBlastX LTR_Gypsy 706461 706556 20 + . . scaffold443 WUBlastX LTR_Copia 706625 706690 23 + . . scaffold443 WUBlastX LTR_ERV1 706932 707561 83 + . . scaffold443 WUBlastX LTR_ERV1 707076 707564 110 + . . scaffold443 WUBlastX LTR_Gypsy 707172 708404 632 + . . scaffold443 WUBlastX LTR_Gypsy 708327 708434 31 + . . scaffold443 GLEAN mRNA 709931 711618 0.889836 - . ID=CGI_10022786; scaffold443 WUBlastX LTR_Gypsy 710054 710524 50 - . . scaffold443 TRF Tandem_Repeat 711377 711435 118 + . . scaffold443 GLEAN promoter 711619 712618 0.889836 - . ID=CGI_10022786; scaffold443 TRF Tandem_Repeat 711760 711819 120 + . . scaffold443 WUBlastX LTR_Gypsy 713365 714594 931 - . . scaffold443 WUBlastX LTR_Copia 713689 714777 57 - . . scaffold443 WUBlastX LTR_Gypsy 715366 715488 27 - . . scaffold443 GLEAN mRNA 718966 724501 0.999929 - . ID=CGI_10022787; scaffold443 TRF Tandem_Repeat 719826 720468 613 + . . scaffold443 TRF Tandem_Repeat 719826 720468 543 + . . scaffold443 TRF Tandem_Repeat 719826 720468 387 + . . scaffold443 GLEAN promoter 724502 725501 0.999929 - . ID=CGI_10022787; scaffold443 TRF Tandem_Repeat 734345 734425 153 + . . scaffold443 TRF Tandem_Repeat 739221 739649 315 + . . scaffold443 GLEAN promoter 739783 740782 1 + . ID=CGI_10022788; scaffold443 GLEAN mRNA 740783 742917 1 + . ID=CGI_10022788; scaffold443 TRF Tandem_Repeat 742629 742673 90 + . . scaffold443 WUBlastX LINE_RTE-X 747126 747302 31 + . . scaffold443 WUBlastX LINE_RTE-X 747156 747437 72 + . . scaffold443 GLEAN promoter 753317 754316 0.457175 + . ID=CGI_10022789; scaffold443 GLEAN mRNA 754317 763301 0.457175 + . ID=CGI_10022789; scaffold443 TRF Tandem_Repeat 761701 761794 179 + . . scaffold443 GLEAN mRNA 764780 772249 1 - . ID=CGI_10022790; scaffold443 GLEAN promoter 772250 773249 1 - . ID=CGI_10022790; scaffold443 TRF Tandem_Repeat 772446 772494 98 + . . scaffold443 TRF Tandem_Repeat 773249 773330 116 + . . scaffold443 TRF Tandem_Repeat 779677 779715 78 + . . scaffold444 WUBlastX DNA_Maverick 1730 2149 138 - . . scaffold444 WUBlastX DNA_Maverick 2170 2547 202 - . . scaffold444 TRF Tandem_Repeat 35024 35803 1074 + . . scaffold444 GLEAN mRNA 38666 39079 0.733495 - . ID=CGI_10017431; scaffold444 WUBlastX LTR_Ngaro 38693 39220 42 - . . scaffold444 GLEAN promoter 39080 40079 0.733495 - . ID=CGI_10017431; scaffold444 TRF Tandem_Repeat 44768 44799 64 + . . scaffold444 TRF Tandem_Repeat 45293 45337 90 + . . scaffold444 TRF Tandem_Repeat 58303 58344 66 + . . scaffold444 TRF Tandem_Repeat 58472 58533 81 + . . scaffold444 TRF Tandem_Repeat 62463 63635 960 + . . scaffold444 TRF Tandem_Repeat 69024 69327 371 + . . scaffold444 TRF Tandem_Repeat 69024 69210 203 + . . scaffold444 TRF Tandem_Repeat 69231 69339 164 + . . scaffold444 WUBlastX LINE_RTE-BovB 72407 72625 43 - . . scaffold444 WUBlastX LINE_RTE-BovB 72446 72625 99 - . . scaffold444 GLEAN mRNA 83519 84824 0.932503 - . ID=CGI_10017432; scaffold444 GLEAN promoter 84825 85824 0.932503 - . ID=CGI_10017432; scaffold444 TRF Tandem_Repeat 91554 91599 74 + . . scaffold444 GLEAN mRNA 95804 98651 0.527483 - . ID=CGI_10017433; scaffold444 GLEAN promoter 98652 99651 0.527483 - . ID=CGI_10017433; scaffold444 TRF Tandem_Repeat 100433 100578 172 + . . scaffold444 TRF Tandem_Repeat 100448 100568 197 + . . scaffold444 TRF Tandem_Repeat 102253 102327 150 + . . scaffold444 WUBlastX LINE_RTE-X 104071 105681 709 - . . scaffold444 WUBlastX LINE_CR1 105628 105741 20 - . . scaffold444 WUBlastX LINE_L2 105709 106071 186 + . . scaffold444 TRF Tandem_Repeat 107640 107713 88 + . . scaffold444 TRF Tandem_Repeat 107643 107712 79 + . . scaffold444 GLEAN promoter 116256 117255 1 + . ID=CGI_10017434; scaffold444 GLEAN mRNA 117256 119174 1 + . ID=CGI_10017434; scaffold444 GLEAN mRNA 146204 146992 0.465473 - . ID=CGI_10017435; scaffold444 GLEAN promoter 146993 147992 0.465473 - . ID=CGI_10017435; scaffold444 GLEAN mRNA 201300 201686 0.932469 - . ID=CGI_10017436; scaffold444 GLEAN promoter 201687 202686 0.932469 - . ID=CGI_10017436; scaffold444 TRF Tandem_Repeat 211505 211533 58 + . . scaffold444 TRF Tandem_Repeat 226442 226505 114 + . . scaffold444 TRF Tandem_Repeat 229158 229241 96 + . . scaffold444 TRF Tandem_Repeat 229158 229241 51 + . . scaffold444 TRF Tandem_Repeat 229159 229229 52 + . . scaffold444 TRF Tandem_Repeat 229183 229242 66 + . . scaffold444 TRF Tandem_Repeat 248024 248076 97 + . . scaffold444 TRF Tandem_Repeat 252010 252061 59 + . . scaffold444 TRF Tandem_Repeat 252397 252443 94 + . . scaffold444 TRF Tandem_Repeat 260375 260929 583 + . . scaffold444 TRF Tandem_Repeat 263662 264306 753 + . . scaffold444 WUBlastX DNA_Merlin 268095 268208 66 - . . scaffold444 WUBlastX DNA_Merlin 268095 268232 64 - . . scaffold444 TRF Tandem_Repeat 268907 268970 128 + . . scaffold444 TRF Tandem_Repeat 270366 270433 91 + . . scaffold444 TRF Tandem_Repeat 275814 276042 227 + . . scaffold444 TRF Tandem_Repeat 275888 275999 68 + . . scaffold444 TRF Tandem_Repeat 276731 276777 94 + . . scaffold444 TRF Tandem_Repeat 277087 277148 115 + . . scaffold444 TRF Tandem_Repeat 278067 278112 92 + . . scaffold444 TRF Tandem_Repeat 280206 280398 164 + . . scaffold444 TRF Tandem_Repeat 280207 280418 67 + . . scaffold444 TRF Tandem_Repeat 280313 280418 85 + . . scaffold444 TRF Tandem_Repeat 284713 284738 52 + . . scaffold444 TRF Tandem_Repeat 285455 285480 52 + . . scaffold444 TRF Tandem_Repeat 291092 291186 88 + . . scaffold444 WUBlastX LINE_L1-Tx1 291666 295151 1141 - . . scaffold444 TRF Tandem_Repeat 338302 338328 54 + . . scaffold444 TRF Tandem_Repeat 338324 339194 479 + . . scaffold444 WUBlastX LINE_RTE-X 341356 341658 100 + . . scaffold444 WUBlastX LINE_RTE-X 341407 341703 58 + . . scaffold444 TRF Tandem_Repeat 342175 342207 57 + . . scaffold444 TRF Tandem_Repeat 347561 347785 335 + . . scaffold444 TRF Tandem_Repeat 369694 369742 98 + . . scaffold444 WUBlastX LINE_Penelope 397615 397668 21 + . . scaffold444 WUBlastX LINE_Penelope 398216 398368 33 + . . scaffold444 WUBlastX LINE_Penelope 398298 398675 91 + . . scaffold444 WUBlastX LINE_Penelope 398352 398660 140 + . . scaffold444 TRF Tandem_Repeat 399293 399318 52 + . . scaffold444 GLEAN mRNA 400961 402450 1 - . ID=CGI_10017437; scaffold444 GLEAN promoter 402451 403450 1 - . ID=CGI_10017437; scaffold444 TRF Tandem_Repeat 409056 409213 163 + . . scaffold444 TRF Tandem_Repeat 409056 409210 83 + . . scaffold444 TRF Tandem_Repeat 409057 409213 162 + . . scaffold444 TRF Tandem_Repeat 409993 410077 149 + . . scaffold444 WUBlastX DNA_TcMar-Marin 411619 411876 68 - . . scaffold444 WUBlastX DNA_TcMar-Marin 411661 411882 73 - . . scaffold444 WUBlastX DNA_TcMar-Marin 411751 411918 61 - . . scaffold444 TRF Tandem_Repeat 414333 414702 244 + . . scaffold444 TRF Tandem_Repeat 414333 414708 288 + . . scaffold444 TRF Tandem_Repeat 414333 414755 395 + . . scaffold444 WUBlastX LINE_RTE-X 416281 416607 36 + . . scaffold444 WUBlastX LINE_L2 416636 417055 66 + . . scaffold444 WUBlastX LINE_Jockey 416726 417058 96 + . . scaffold444 WUBlastX LINE_L2 416777 417109 79 + . . scaffold444 WUBlastX LINE_RTE-X 416777 417049 129 + . . scaffold444 TRF Tandem_Repeat 417207 417279 71 + . . scaffold444 TRF Tandem_Repeat 422404 422513 52 + . . scaffold444 TRF Tandem_Repeat 428830 428865 72 + . . scaffold444 TRF Tandem_Repeat 431063 431137 64 + . . scaffold444 GLEAN mRNA 437320 447994 0.998935 - . ID=CGI_10017438; scaffold444 GLEAN promoter 447995 448994 0.998935 - . ID=CGI_10017438; scaffold444 TRF Tandem_Repeat 456159 456464 365 + . . scaffold444 GLEAN promoter 468623 469622 0.986508 + . ID=CGI_10017439; scaffold444 GLEAN mRNA 469623 485893 0.986508 + . ID=CGI_10017439; scaffold444 GLEAN mRNA 491370 498382 0.990769 - . ID=CGI_10017440; scaffold444 TRF Tandem_Repeat 492427 492482 112 + . . scaffold444 TRF Tandem_Repeat 495581 495620 80 + . . scaffold444 TRF Tandem_Repeat 496491 496526 72 + . . scaffold444 GLEAN promoter 498383 499382 0.990769 - . ID=CGI_10017440; scaffold444 GLEAN promoter 498853 499852 0.999547 + . ID=CGI_10017441; scaffold444 TRF Tandem_Repeat 498999 499039 82 + . . scaffold444 GLEAN mRNA 499853 500222 0.999547 + . ID=CGI_10017441; scaffold444 GLEAN mRNA 502221 505659 1 - . ID=CGI_10017442; scaffold444 GLEAN promoter 505660 505886 1 - . ID=CGI_10017442; scaffold445 GLEAN mRNA 1727 13095 0.999975 - . ID=CGI_10019421; scaffold445 TRF Tandem_Repeat 5677 6637 1412 + . . scaffold445 TRF Tandem_Repeat 6668 6703 63 + . . scaffold445 GLEAN promoter 13096 14095 0.999975 - . ID=CGI_10019421; scaffold445 GLEAN mRNA 13218 22326 0.998042 - . ID=CGI_10019422; scaffold445 TRF Tandem_Repeat 13834 14083 92 + . . scaffold445 TRF Tandem_Repeat 14986 15752 912 + . . scaffold445 TRF Tandem_Repeat 19271 19381 120 + . . scaffold445 TRF Tandem_Repeat 19391 19601 323 + . . scaffold445 GLEAN promoter 21199 22198 0.998384 + . ID=CGI_10019423; scaffold445 GLEAN mRNA 22199 27499 0.998384 + . ID=CGI_10019423; scaffold445 GLEAN promoter 22327 23326 0.998042 - . ID=CGI_10019422; scaffold445 GLEAN mRNA 27783 32892 1 - . ID=CGI_10019424; scaffold445 GLEAN promoter 32144 33143 1 + . ID=CGI_10019425; scaffold445 GLEAN promoter 32893 33892 1 - . ID=CGI_10019424; scaffold445 GLEAN mRNA 33144 33945 1 + . ID=CGI_10019425; scaffold445 GLEAN promoter 34826 35825 0.999997 + . ID=CGI_10019426; scaffold445 GLEAN mRNA 35826 36923 0.999997 + . ID=CGI_10019426; scaffold445 GLEAN mRNA 36759 56639 0.911407 - . ID=CGI_10019427; scaffold445 TRF Tandem_Repeat 47211 47237 54 + . . scaffold445 TRF Tandem_Repeat 49089 49144 53 + . . scaffold445 GLEAN promoter 56640 57639 0.911407 - . ID=CGI_10019427; scaffold445 TRF Tandem_Repeat 64745 64799 110 + . . scaffold445 GLEAN mRNA 68106 69305 0.993248 - . ID=CGI_10019428; scaffold445 GLEAN promoter 69306 70305 0.993248 - . ID=CGI_10019428; scaffold445 TRF Tandem_Repeat 81794 81819 52 + . . scaffold445 TRF Tandem_Repeat 101815 101865 102 + . . scaffold445 WUBlastX LINE_R2-Hero 114918 115406 119 - . . scaffold445 WUBlastX LINE_R2-Hero 115391 116044 153 - . . scaffold445 WUBlastX LINE_R2-Hero 115649 116044 213 - . . scaffold445 TRF Tandem_Repeat 116832 116891 120 + . . scaffold445 TRF Tandem_Repeat 124427 124478 104 + . . scaffold445 TRF Tandem_Repeat 125978 126690 1090 + . . scaffold445 TRF Tandem_Repeat 125978 126690 1090 + . . scaffold445 TRF Tandem_Repeat 125978 126690 1114 + . . scaffold445 TRF Tandem_Repeat 128673 128736 76 + . . scaffold445 GLEAN mRNA 129095 151521 0.999676 - . ID=CGI_10019429; scaffold445 TRF Tandem_Repeat 150374 150425 104 + . . scaffold445 GLEAN promoter 151522 152521 0.999676 - . ID=CGI_10019429; scaffold445 GLEAN mRNA 156446 162860 0.702385 - . ID=CGI_10019430; scaffold445 GLEAN promoter 156494 157493 0.500104 + . ID=CGI_10019431; scaffold445 GLEAN mRNA 157494 175078 0.500104 + . ID=CGI_10019431; scaffold445 TRF Tandem_Repeat 162146 162690 624 + . . scaffold445 TRF Tandem_Repeat 162174 162690 705 + . . scaffold445 TRF Tandem_Repeat 162174 162690 748 + . . scaffold445 GLEAN promoter 162861 163860 0.702385 - . ID=CGI_10019430; scaffold445 GLEAN mRNA 165031 179035 0.981925 - . ID=CGI_10019432; scaffold445 WUBlastX LINE_RTE-X 173303 173629 30 - . . scaffold445 WUBlastX LINE_RTE-X 173372 173611 57 - . . scaffold445 WUBlastX LINE_RTE-X 173438 173665 37 - . . scaffold445 WUBlastX DNA_Kolobok 174015 174257 60 + . . scaffold445 WUBlastX DNA_Kolobok 174926 175063 21 + . . scaffold445 GLEAN promoter 179036 180035 0.981925 - . ID=CGI_10019432; scaffold445 GLEAN promoter 179901 180900 0.734554 + . ID=CGI_10019433; scaffold445 GLEAN mRNA 180901 184502 0.734554 + . ID=CGI_10019433; scaffold445 GLEAN mRNA 186699 188387 1 - . ID=CGI_10019434; scaffold445 GLEAN promoter 188388 189387 1 - . ID=CGI_10019434; scaffold445 GLEAN mRNA 193059 213468 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 198720 198903 228 + . . scaffold445 TRF Tandem_Repeat 198944 198984 82 + . . scaffold445 TRF Tandem_Repeat 200500 200836 579 + . . scaffold445 TRF Tandem_Repeat 204408 204655 241 + . . scaffold445 TRF Tandem_Repeat 205779 205809 62 + . . scaffold445 TRF Tandem_Repeat 205877 205918 77 + . . scaffold445 TRF Tandem_Repeat 208030 208069 80 + . . scaffold445 GLEAN promoter 213469 214468 0.999676 - . ID=CGI_10019435; scaffold445 TRF Tandem_Repeat 214012 214040 58 + . . scaffold445 TRF Tandem_Repeat 214602 214632 62 + . . scaffold445 GLEAN promoter 217775 218774 0.988639 + . ID=CGI_10019436; scaffold445 GLEAN mRNA 218775 220541 0.988639 + . ID=CGI_10019436; scaffold445 GLEAN promoter 222281 223280 1 + . ID=CGI_10019437; scaffold445 GLEAN mRNA 223281 224963 1 + . ID=CGI_10019437; scaffold445 GLEAN promoter 226217 227216 1 + . ID=CGI_10019438; scaffold445 GLEAN mRNA 227217 232455 1 + . ID=CGI_10019438; scaffold445 TRF Tandem_Repeat 232901 232974 127 + . . scaffold445 TRF Tandem_Repeat 234208 234275 136 + . . scaffold445 WUBlastX LINE_RTE-X 240249 240929 125 + . . scaffold445 WUBlastX LINE_RTE-X 240252 240803 135 + . . scaffold445 TRF Tandem_Repeat 241458 241489 50 + . . scaffold445 TRF Tandem_Repeat 241635 241699 130 + . . scaffold445 WUBlastX LINE_RTE-X 242842 243336 89 + . . scaffold445 WUBlastX LINE_RTE-X 242929 243336 90 + . . scaffold445 WUBlastX LINE_RTE-X 243181 243393 63 + . . scaffold445 WUBlastX LINE_RTE-X 243181 243444 53 + . . scaffold445 WUBlastX LINE_RTE-BovB 245666 245734 37 + . . scaffold445 WUBlastX LINE_RTE-BovB 245740 245826 59 + . . scaffold445 GLEAN promoter 248370 249369 1 + . ID=CGI_10019439; scaffold445 GLEAN mRNA 249370 253942 1 + . ID=CGI_10019439; scaffold445 TRF Tandem_Repeat 249419 249463 90 + . . scaffold445 TRF Tandem_Repeat 254178 254222 90 + . . scaffold445 WUBlastX DNA_Harbinger 256780 257388 130 - . . scaffold445 WUBlastX DNA_Harbinger 256903 257406 153 - . . scaffold445 WUBlastX DNA_Harbinger 257426 257536 61 - . . scaffold445 TRF Tandem_Repeat 258807 258864 116 + . . scaffold445 TRF Tandem_Repeat 258886 258917 64 + . . scaffold445 GLEAN promoter 259694 260693 0.654854 + . ID=CGI_10019440; scaffold445 GLEAN mRNA 260694 265220 0.654854 + . ID=CGI_10019440; scaffold445 TRF Tandem_Repeat 265294 265340 67 + . . scaffold445 GLEAN promoter 272666 273665 0.960084 + . ID=CGI_10019441; scaffold445 GLEAN mRNA 273666 276752 0.960084 + . ID=CGI_10019441; scaffold445 GLEAN mRNA 279463 293927 0.999675 - . ID=CGI_10019442; scaffold445 GLEAN promoter 293297 294296 1 + . ID=CGI_10019443; scaffold445 GLEAN promoter 293928 294927 0.999675 - . ID=CGI_10019442; scaffold445 GLEAN mRNA 294297 297463 1 + . ID=CGI_10019443; scaffold445 GLEAN mRNA 299978 341164 0.811094 - . ID=CGI_10019444; scaffold445 TRF Tandem_Repeat 313910 314011 159 + . . scaffold445 TRF Tandem_Repeat 315207 315260 108 + . . scaffold445 GLEAN promoter 317199 318198 0.618233 + . ID=CGI_10019445; scaffold445 GLEAN mRNA 318199 318429 0.618233 + . ID=CGI_10019445; scaffold445 TRF Tandem_Repeat 318626 318670 81 + . . scaffold445 WUBlastX LTR_Gypsy-Cigr 321093 321467 39 - . . scaffold445 WUBlastX LTR_Gypsy 321126 321326 61 - . . scaffold445 WUBlastX LINE_R2-Hero 324237 324596 64 + . . scaffold445 WUBlastX LINE_R2-Hero 324240 324512 67 + . . scaffold445 TRF Tandem_Repeat 329505 329548 70 + . . scaffold445 TRF Tandem_Repeat 329506 329550 76 + . . scaffold445 TRF Tandem_Repeat 336080 336120 82 + . . scaffold445 GLEAN promoter 341165 342164 0.811094 - . ID=CGI_10019444; scaffold445 GLEAN promoter 342702 343701 0.980388 + . ID=CGI_10019446; scaffold445 GLEAN mRNA 343702 351268 0.980388 + . ID=CGI_10019446; scaffold445 TRF Tandem_Repeat 345827 345888 117 + . . scaffold445 GLEAN mRNA 356824 371899 0.927273 - . ID=CGI_10019447; scaffold445 TRF Tandem_Repeat 364373 364941 221 + . . scaffold445 TRF Tandem_Repeat 364656 364943 227 + . . scaffold445 GLEAN promoter 371900 372899 0.927273 - . ID=CGI_10019447; scaffold445 TRF Tandem_Repeat 372534 372633 191 + . . scaffold445 GLEAN promoter 373378 374377 1 + . ID=CGI_10019448; scaffold445 GLEAN mRNA 374378 376719 1 + . ID=CGI_10019448; scaffold445 TRF Tandem_Repeat 375393 375437 90 + . . scaffold445 WUBlastX LINE_L2 392579 393328 143 + . . scaffold445 TRF Tandem_Repeat 404141 404187 94 + . . scaffold445 TRF Tandem_Repeat 405709 405743 70 + . . scaffold445 WUBlastX LINE_RTE-X 408525 408641 30 + . . scaffold445 GLEAN mRNA 414757 427578 0.609844 - . ID=CGI_10019449; scaffold445 TRF Tandem_Repeat 425556 425613 116 + . . scaffold445 GLEAN promoter 427579 428578 0.609844 - . ID=CGI_10019449; scaffold445 TRF Tandem_Repeat 428394 428443 56 + . . scaffold445 TRF Tandem_Repeat 429712 429768 114 + . . scaffold445 GLEAN mRNA 442699 449331 0.999938 - . ID=CGI_10019450; scaffold445 TRF Tandem_Repeat 448976 449018 86 + . . scaffold445 GLEAN promoter 449332 450331 0.999938 - . ID=CGI_10019450; scaffold445 TRF Tandem_Repeat 449683 449713 62 + . . scaffold445 TRF Tandem_Repeat 451155 451179 50 + . . scaffold445 WUBlastX DNA_hAT-Tip100 470442 470810 196 - . . scaffold445 WUBlastX DNA_hAT-Tip100 470451 471212 47 - . . scaffold445 WUBlastX DNA_hAT-Tip100 470454 471065 59 - . . scaffold445 WUBlastX DNA_hAT-Tip100 470484 470912 70 - . . scaffold445 TRF Tandem_Repeat 474347 474383 74 + . . scaffold445 TRF Tandem_Repeat 475578 475625 96 + . . scaffold445 TRF Tandem_Repeat 477396 477441 60 + . . scaffold445 TRF Tandem_Repeat 491367 491412 83 + . . scaffold445 TRF Tandem_Repeat 491982 492463 169 + . . scaffold445 TRF Tandem_Repeat 492020 492749 476 + . . scaffold445 TRF Tandem_Repeat 492121 492793 382 + . . scaffold445 TRF Tandem_Repeat 492254 492696 487 + . . scaffold445 TRF Tandem_Repeat 492501 492572 53 + . . scaffold445 TRF Tandem_Repeat 495791 495931 122 + . . scaffold445 TRF Tandem_Repeat 496959 497092 119 + . . scaffold445 TRF Tandem_Repeat 498718 498754 74 + . . scaffold445 TRF Tandem_Repeat 503033 503842 777 + . . scaffold445 TRF Tandem_Repeat 503389 504117 694 + . . scaffold445 TRF Tandem_Repeat 508015 508085 72 + . . scaffold445 TRF Tandem_Repeat 512652 512832 109 + . . scaffold445 TRF Tandem_Repeat 512652 512935 131 + . . scaffold445 TRF Tandem_Repeat 513012 513827 206 + . . scaffold445 TRF Tandem_Repeat 513048 513962 346 + . . scaffold445 TRF Tandem_Repeat 513479 513636 246 + . . scaffold445 TRF Tandem_Repeat 525264 525300 65 + . . scaffold445 GLEAN mRNA 525465 531531 0.55721 - . ID=CGI_10019451; scaffold445 TRF Tandem_Repeat 525974 526034 106 + . . scaffold445 GLEAN promoter 530545 531544 1 + . ID=CGI_10019452; scaffold445 GLEAN promoter 531532 532531 0.55721 - . ID=CGI_10019451; scaffold445 GLEAN mRNA 531545 532274 1 + . ID=CGI_10019452; scaffold445 TRF Tandem_Repeat 532532 532574 86 + . . scaffold445 GLEAN mRNA 534739 536160 1 - . ID=CGI_10019453; scaffold445 GLEAN promoter 536161 537160 1 - . ID=CGI_10019453; scaffold445 TRF Tandem_Repeat 539348 539381 68 + . . scaffold445 TRF Tandem_Repeat 541154 541183 60 + . . scaffold445 TRF Tandem_Repeat 543899 544007 60 + . . scaffold445 TRF Tandem_Repeat 544961 545010 84 + . . scaffold445 TRF Tandem_Repeat 544964 545009 58 + . . scaffold445 TRF Tandem_Repeat 551388 551428 82 + . . scaffold445 TRF Tandem_Repeat 553059 553110 104 + . . scaffold445 GLEAN mRNA 556469 573508 0.555692 - . ID=CGI_10019454; scaffold445 GLEAN promoter 564261 565260 0.999674 + . ID=CGI_10019455; scaffold445 GLEAN mRNA 565261 567862 0.999674 + . ID=CGI_10019455; scaffold445 GLEAN promoter 572783 573782 1 + . ID=CGI_10019456; scaffold445 GLEAN promoter 573509 574508 0.555692 - . ID=CGI_10019454; scaffold445 GLEAN mRNA 573783 578089 1 + . ID=CGI_10019456; scaffold445 GLEAN mRNA 580185 583468 0.728518 - . ID=CGI_10019457; scaffold445 GLEAN promoter 582525 583524 0.998384 + . ID=CGI_10019458; scaffold445 GLEAN promoter 583469 584468 0.728518 - . ID=CGI_10019457; scaffold445 GLEAN mRNA 583525 589344 0.998384 + . ID=CGI_10019458; scaffold445 TRF Tandem_Repeat 583889 583950 115 + . . scaffold445 GLEAN promoter 591368 592367 0.999676 + . ID=CGI_10019459; scaffold445 GLEAN mRNA 592368 601001 0.999676 + . ID=CGI_10019459; scaffold446 TRF Tandem_Repeat 1015 1259 418 + . . scaffold446 WUBlastX LINE_L2 4752 6320 945 - . . scaffold446 WUBlastX LINE_Jockey 5031 6599 93 - . . scaffold446 WUBlastX LINE_L1-Tx1 44787 46043 65 - . . scaffold446 WUBlastX LINE_L1-Tx1 44979 46043 190 - . . scaffold446 WUBlastX LINE_L1-Tx1 46042 47103 687 - . . scaffold446 WUBlastX LINE_L1 47096 47938 273 - . . scaffold446 WUBlastX LINE_L1 47108 48550 208 - . . scaffold446 WUBlastX LINE_L1-Tx1 47928 48311 252 - . . scaffold446 WUBlastX LINE_L2 48905 48994 39 - . . scaffold446 WUBlastX LINE_L2 48979 49185 43 - . . scaffold446 GLEAN mRNA 54827 55285 1 - . ID=CGI_10007978; scaffold446 GLEAN promoter 55286 56285 1 - . ID=CGI_10007978; scaffold446 TRF Tandem_Repeat 61836 61922 174 + . . scaffold446 TRF Tandem_Repeat 65481 65523 59 + . . scaffold446 GLEAN promoter 66304 67303 0.936933 + . ID=CGI_10007979; scaffold446 GLEAN mRNA 67304 132545 0.936933 + . ID=CGI_10007979; scaffold446 TRF Tandem_Repeat 67771 67813 86 + . . scaffold446 TRF Tandem_Repeat 79159 79372 392 + . . scaffold446 TRF Tandem_Repeat 83821 83853 57 + . . scaffold446 TRF Tandem_Repeat 85797 85837 73 + . . scaffold446 TRF Tandem_Repeat 104819 104857 60 + . . scaffold446 TRF Tandem_Repeat 122858 122912 65 + . . scaffold446 TRF Tandem_Repeat 122858 122903 65 + . . scaffold446 TRF Tandem_Repeat 126389 127708 1261 + . . scaffold446 TRF Tandem_Repeat 136029 136079 102 + . . scaffold446 WUBlastX LTR_Gypsy 164374 165135 180 + . . scaffold446 WUBlastX LTR_Gypsy 164524 165135 353 + . . scaffold446 WUBlastX LTR_Gypsy 165135 165608 341 + . . scaffold446 WUBlastX LTR_Gypsy 165159 166406 338 + . . scaffold446 WUBlastX LTR_Gypsy 165174 166637 325 + . . scaffold446 WUBlastX LTR_Gypsy 165975 166859 77 + . . scaffold446 WUBlastX LTR_Gypsy 166458 166694 77 + . . scaffold446 TRF Tandem_Repeat 167634 168657 1352 + . . scaffold446 WUBlastX LTR_DIRS 171605 171727 31 + . . scaffold446 WUBlastX LTR_DIRS 171806 172189 35 + . . scaffold446 WUBlastX LTR_DIRS 171812 172135 57 + . . scaffold446 WUBlastX LTR_DIRS 171815 172021 74 + . . scaffold446 WUBlastX LINE_RTE-X 174231 174419 34 - . . scaffold446 WUBlastX LINE_RTE-X 174267 174419 39 - . . scaffold446 WUBlastX LINE_RTE-X 174288 174503 28 - . . scaffold446 WUBlastX LINE_RTE-X 174297 174419 43 - . . scaffold446 WUBlastX LINE_RTE-X 174948 175184 24 - . . scaffold446 WUBlastX LINE_RTE-X 175047 175199 34 - . . scaffold446 WUBlastX LINE_RTE-X 175180 175599 125 - . . scaffold446 WUBlastX LINE_RTE-X 175189 175695 77 - . . scaffold446 TRF Tandem_Repeat 176224 176251 56 + . . scaffold446 WUBlastX DNA_Kolobok 185525 185902 26 + . . scaffold446 WUBlastX DNA_P 185528 185788 64 + . . scaffold446 WUBlastX DNA_Kolobok 186844 187164 88 + . . scaffold446 WUBlastX DNA_Kolobok 187104 187343 103 + . . scaffold446 WUBlastX DNA_Kolobok 187434 187649 36 + . . scaffold446 WUBlastX DNA_Kolobok 187467 187586 59 + . . scaffold446 WUBlastX LTR_Gypsy 191406 193091 1174 - . . scaffold446 WUBlastX LTR_Gypsy 192786 193175 123 - . . scaffold446 WUBlastX LTR_Gypsy 193603 193704 29 - . . scaffold447 GLEAN promoter 608 1607 0.995957 + . ID=CGI_10014216; scaffold447 GLEAN mRNA 1142 5054 1 - . ID=CGI_10014215; scaffold447 GLEAN mRNA 1608 38607 0.995957 + . ID=CGI_10014216; scaffold447 GLEAN promoter 5055 6054 1 - . ID=CGI_10014215; scaffold447 TRF Tandem_Repeat 20533 21710 1646 + . . scaffold447 WUBlastX LINE_L1-Tx1 29362 29811 27 + . . scaffold447 WUBlastX LINE_L1-Tx1 29440 29808 45 + . . scaffold447 WUBlastX LINE_L1 29590 29898 45 + . . scaffold447 TRF Tandem_Repeat 31638 31925 264 + . . scaffold447 TRF Tandem_Repeat 33359 33394 63 + . . scaffold447 GLEAN mRNA 37402 38627 0.888142 - . ID=CGI_10014217; scaffold447 GLEAN promoter 38628 39627 0.888142 - . ID=CGI_10014217; scaffold447 TRF Tandem_Repeat 43557 43590 50 + . . scaffold447 TRF Tandem_Repeat 48434 48484 102 + . . scaffold447 GLEAN mRNA 50067 67209 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 54919 54967 98 + . . scaffold447 TRF Tandem_Repeat 60815 60942 85 + . . scaffold447 TRF Tandem_Repeat 60815 61314 348 + . . scaffold447 TRF Tandem_Repeat 61016 61154 107 + . . scaffold447 TRF Tandem_Repeat 61025 61189 84 + . . scaffold447 TRF Tandem_Repeat 61223 61307 65 + . . scaffold447 TRF Tandem_Repeat 61234 61307 67 + . . scaffold447 TRF Tandem_Repeat 63126 63770 369 + . . scaffold447 TRF Tandem_Repeat 63126 63760 453 + . . scaffold447 TRF Tandem_Repeat 63126 63343 150 + . . scaffold447 TRF Tandem_Repeat 63423 63544 127 + . . scaffold447 TRF Tandem_Repeat 63426 63757 90 + . . scaffold447 TRF Tandem_Repeat 63629 63760 68 + . . scaffold447 TRF Tandem_Repeat 63942 63999 53 + . . scaffold447 TRF Tandem_Repeat 64356 64829 94 + . . scaffold447 TRF Tandem_Repeat 64638 64744 65 + . . scaffold447 TRF Tandem_Repeat 64661 64811 152 + . . scaffold447 TRF Tandem_Repeat 64677 64742 51 + . . scaffold447 GLEAN promoter 67210 68209 0.79787 - . ID=CGI_10014218; scaffold447 TRF Tandem_Repeat 70485 70561 154 + . . scaffold447 TRF Tandem_Repeat 77578 77630 106 + . . scaffold447 WUBlastX LTR_Ngaro 82962 83939 391 - . . scaffold447 WUBlastX LTR_Ngaro 83846 84559 396 - . . scaffold447 WUBlastX LTR_Ngaro 84574 85422 654 - . . scaffold447 WUBlastX LTR_Ngaro 85550 86146 178 - . . scaffold447 WUBlastX LTR_Ngaro 85730 86422 157 - . . scaffold447 TRF Tandem_Repeat 111216 111328 151 + . . scaffold447 TRF Tandem_Repeat 139428 139816 660 + . . scaffold447 GLEAN mRNA 143775 164743 0.928588 - . ID=CGI_10014219; scaffold447 TRF Tandem_Repeat 144851 145213 575 + . . scaffold447 TRF Tandem_Repeat 145179 145347 118 + . . scaffold447 TRF Tandem_Repeat 145939 146093 125 + . . scaffold447 TRF Tandem_Repeat 145939 146122 111 + . . scaffold447 TRF Tandem_Repeat 145956 146162 175 + . . scaffold447 TRF Tandem_Repeat 154535 154586 77 + . . scaffold447 TRF Tandem_Repeat 163007 163330 252 + . . scaffold447 GLEAN promoter 164744 165743 0.928588 - . ID=CGI_10014219; scaffold447 GLEAN promoter 165831 166830 0.980509 + . ID=CGI_10014220; scaffold447 GLEAN mRNA 166831 175120 0.980509 + . ID=CGI_10014220; scaffold447 TRF Tandem_Repeat 172374 172732 560 + . . scaffold447 GLEAN mRNA 177180 181589 0.999547 - . ID=CGI_10014221; scaffold447 GLEAN promoter 181590 182589 0.999547 - . ID=CGI_10014221; scaffold447 GLEAN mRNA 182184 190498 1 - . ID=CGI_10014222; scaffold447 TRF Tandem_Repeat 184039 184306 244 + . . scaffold447 TRF Tandem_Repeat 184127 184314 331 + . . scaffold447 TRF Tandem_Repeat 185924 186004 103 + . . scaffold447 TRF Tandem_Repeat 186256 186299 61 + . . scaffold447 TRF Tandem_Repeat 187185 187284 107 + . . scaffold447 TRF Tandem_Repeat 187186 187284 128 + . . scaffold447 GLEAN promoter 190499 191498 1 - . ID=CGI_10014222; scaffold447 TRF Tandem_Repeat 192049 192321 447 + . . scaffold447 TRF Tandem_Repeat 192052 192217 133 + . . scaffold447 TRF Tandem_Repeat 192077 192313 149 + . . scaffold447 TRF Tandem_Repeat 196591 196636 67 + . . scaffold447 GLEAN promoter 207193 208192 0.618186 + . ID=CGI_10014223; scaffold447 GLEAN mRNA 208193 208396 0.618186 + . ID=CGI_10014223; scaffold447 GLEAN mRNA 211143 212865 0.999531 - . ID=CGI_10014224; scaffold447 GLEAN promoter 212866 213865 0.999531 - . ID=CGI_10014224; scaffold447 GLEAN promoter 215035 216034 0.990731 + . ID=CGI_10014225; scaffold447 GLEAN mRNA 216035 225243 0.990731 + . ID=CGI_10014225; scaffold447 WUBlastX DNA_Harbinger 221864 222679 317 - . . scaffold447 GLEAN promoter 226416 227415 0.996616 + . ID=CGI_10014226; scaffold447 GLEAN mRNA 227416 236726 0.996616 + . ID=CGI_10014226; scaffold447 GLEAN promoter 236927 237926 0.702385 + . ID=CGI_10014227; scaffold447 GLEAN mRNA 237927 239564 0.702385 + . ID=CGI_10014227; scaffold447 TRF Tandem_Repeat 238786 239032 255 + . . scaffold447 TRF Tandem_Repeat 239938 240204 256 + . . scaffold447 TRF Tandem_Repeat 240211 240511 426 + . . scaffold447 TRF Tandem_Repeat 243913 243967 110 + . . scaffold447 TRF Tandem_Repeat 244127 244160 68 + . . scaffold447 GLEAN mRNA 245562 249547 1 - . ID=CGI_10014228; scaffold447 GLEAN promoter 249548 250547 1 - . ID=CGI_10014228; scaffold447 WUBlastX LINE_L2 250736 253144 1431 + . . scaffold447 WUBlastX LTR_DIRS 254258 255076 369 + . . scaffold447 TRF Tandem_Repeat 255215 255331 87 + . . scaffold447 WUBlastX LTR_DIRS 255706 256440 269 + . . scaffold447 WUBlastX LTR_DIRS? 256446 256646 136 + . . scaffold447 WUBlastX LTR_DIRS 256488 256652 136 + . . scaffold447 GLEAN promoter 258612 259611 1 + . ID=CGI_10014229; scaffold447 GLEAN mRNA 259612 260286 1 + . ID=CGI_10014229; scaffold447 WUBlastX LTR_Gypsy 263221 263388 75 + . . scaffold447 WUBlastX LTR_Gypsy 264156 264623 37 + . . scaffold447 WUBlastX LTR_Gypsy 264279 264617 39 + . . scaffold447 WUBlastX LTR_Gypsy 264342 265658 450 + . . scaffold447 WUBlastX LINE_RTE-X 267525 268415 558 - . . scaffold447 TRF Tandem_Repeat 268419 268466 69 + . . scaffold447 TRF Tandem_Repeat 268939 269027 146 + . . scaffold447 TRF Tandem_Repeat 269025 269152 148 + . . scaffold447 TRF Tandem_Repeat 269031 269164 112 + . . scaffold447 WUBlastX LINE_Penelope 269734 270063 136 + . . scaffold447 WUBlastX LINE_Penelope 270066 270527 183 + . . scaffold447 GLEAN mRNA 272119 276290 0.562222 - . ID=CGI_10014230; scaffold447 GLEAN promoter 276291 277290 0.562222 - . ID=CGI_10014230; scaffold447 TRF Tandem_Repeat 277033 277272 444 + . . scaffold447 GLEAN mRNA 301439 308563 0.44783 - . ID=CGI_10014231; scaffold447 TRF Tandem_Repeat 305282 305332 66 + . . scaffold447 TRF Tandem_Repeat 305283 305321 51 + . . scaffold447 GLEAN promoter 308564 309563 0.44783 - . ID=CGI_10014231; scaffold447 TRF Tandem_Repeat 311017 311540 625 + . . scaffold447 GLEAN promoter 311953 312952 0.999068 + . ID=CGI_10014232; scaffold447 GLEAN mRNA 312953 313849 0.999068 + . ID=CGI_10014232; scaffold447 TRF Tandem_Repeat 315012 315042 53 + . . scaffold447 WUBlastX LTR_Gypsy 318094 321840 2462 + . . scaffold447 WUBlastX LTR_Gypsy 318706 321819 2618 + . . scaffold447 WUBlastX LTR_Gypsy 321804 322070 31 + . . scaffold447 WUBlastX LTR_Gypsy 321804 321935 46 + . . scaffold447 TRF Tandem_Repeat 328956 329088 101 + . . scaffold447 GLEAN promoter 331382 332381 0.998297 + . ID=CGI_10014233; scaffold447 GLEAN mRNA 332382 354643 0.998297 + . ID=CGI_10014233; scaffold447 WUBlastX LINE_RTE-X 334408 334446 22 - . . scaffold447 WUBlastX LINE_Rex-Babar 335418 335522 27 - . . scaffold447 WUBlastX LINE_RTE-BovB 335448 335516 40 - . . scaffold447 WUBlastX LINE_RTE-BovB 335477 335734 65 - . . scaffold447 WUBlastX LINE_RTE-BovB 335522 335719 100 - . . scaffold447 WUBlastX LINE_RTE-BovB 335710 335952 247 - . . scaffold447 WUBlastX LINE_RTE-BovB 335952 336188 281 - . . scaffold447 WUBlastX LINE_RTE-BovB 336177 336248 22 - . . scaffold447 WUBlastX LINE_RTE-BovB 336200 337837 1477 - . . scaffold447 WUBlastX LINE_CR1 337298 337948 34 - . . scaffold447 GLEAN mRNA 340288 340602 0.588045 - . ID=CGI_10014234; scaffold447 GLEAN promoter 340603 341602 0.588045 - . ID=CGI_10014234; scaffold447 GLEAN mRNA 340708 342038 0.998354 - . ID=CGI_10014235; scaffold447 GLEAN promoter 342039 343038 0.998354 - . ID=CGI_10014235; scaffold447 GLEAN promoter 367288 368287 0.81168 + . ID=CGI_10014236; scaffold447 GLEAN mRNA 368288 390714 0.81168 + . ID=CGI_10014236; scaffold447 TRF Tandem_Repeat 370011 370308 264 + . . scaffold447 TRF Tandem_Repeat 371884 371979 84 + . . scaffold447 WUBlastX LINE_RTE-X 390373 390483 51 + . . scaffold448 GLEAN promoter 14813 15812 0.727338 + . ID=CGI_10024928; scaffold448 GLEAN mRNA 15813 30397 0.727338 + . ID=CGI_10024928; scaffold448 WUBlastX LTR_DIRS? 27391 27705 135 - . . scaffold448 WUBlastX LTR_DIRS 27625 28212 22 - . . scaffold448 WUBlastX LTR_DIRS 28731 29282 131 - . . scaffold448 WUBlastX LTR_DIRS 29356 29727 59 - . . scaffold448 WUBlastX LTR_DIRS 29473 29712 64 - . . scaffold448 WUBlastX LTR_DIRS 29861 29962 22 - . . scaffold448 WUBlastX LTR_DIRS 31133 31312 108 - . . scaffold448 TRF Tandem_Repeat 32805 32847 50 + . . scaffold448 TRF Tandem_Repeat 40665 40720 94 + . . scaffold448 TRF Tandem_Repeat 48073 48110 69 + . . scaffold448 GLEAN promoter 52576 53575 0.998765 + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 53442 53530 121 + . . scaffold448 TRF Tandem_Repeat 53445 53551 115 + . . scaffold448 GLEAN mRNA 53576 85492 0.998765 + . ID=CGI_10024929; scaffold448 TRF Tandem_Repeat 62081 63009 1043 + . . scaffold448 TRF Tandem_Repeat 62175 63006 1175 + . . scaffold448 TRF Tandem_Repeat 64085 64142 116 + . . scaffold448 WUBlastX LINE_L2 66214 66546 59 + . . scaffold448 WUBlastX LINE_CR1-L2 66612 66758 45 + . . scaffold448 WUBlastX LINE_CR1-L2 66749 66925 21 + . . scaffold448 WUBlastX LINE_CR1 66921 67007 20 + . . scaffold448 TRF Tandem_Repeat 70611 70654 61 + . . scaffold448 TRF Tandem_Repeat 83978 84030 65 + . . scaffold448 TRF Tandem_Repeat 84582 84621 71 + . . scaffold448 GLEAN mRNA 86712 100380 0.990745 - . ID=CGI_10024930; scaffold448 TRF Tandem_Repeat 92449 92474 52 + . . scaffold448 GLEAN promoter 100381 101380 0.990745 - . ID=CGI_10024930; scaffold448 WUBlastX LINE_I 106814 107503 45 - . . scaffold448 WUBlastX LTR_ERVK 106835 107254 54 - . . scaffold448 GLEAN promoter 114879 115878 1 + . ID=CGI_10024931; scaffold448 GLEAN mRNA 115879 118575 1 + . ID=CGI_10024931; scaffold448 TRF Tandem_Repeat 120435 121145 1176 + . . scaffold448 GLEAN promoter 121025 122024 1 + . ID=CGI_10024932; scaffold448 GLEAN mRNA 122025 123913 1 + . ID=CGI_10024932; scaffold448 GLEAN promoter 126336 127335 1 + . ID=CGI_10024933; scaffold448 GLEAN mRNA 127336 142398 1 + . ID=CGI_10024933; scaffold448 TRF Tandem_Repeat 141943 141996 108 + . . scaffold448 TRF Tandem_Repeat 145745 145774 60 + . . scaffold448 GLEAN promoter 152677 153676 0.957711 + . ID=CGI_10024934; scaffold448 GLEAN mRNA 153677 169530 0.957711 + . ID=CGI_10024934; scaffold448 TRF Tandem_Repeat 157145 157193 98 + . . scaffold448 WUBlastX DNA_Harbinger 157872 157979 43 - . . scaffold448 WUBlastX DNA_Harbinger 157984 158913 708 - . . scaffold448 WUBlastX LTR_Gypsy 172316 172468 22 + . . scaffold448 WUBlastX LTR_Gypsy-Cigr 172745 173308 180 + . . scaffold448 WUBlastX LTR_Gypsy 172844 173575 193 + . . scaffold448 WUBlastX LTR_Gypsy 173531 173821 38 + . . scaffold448 WUBlastX LTR_Gypsy-Cigr 173688 174311 62 + . . scaffold448 WUBlastX LTR_Gypsy 173841 174536 95 + . . scaffold448 WUBlastX LTR_Gypsy 174512 174748 177 + . . scaffold448 WUBlastX LTR_Gypsy 174557 174748 207 + . . scaffold448 WUBlastX LTR_Gypsy 174754 176007 1048 + . . scaffold448 WUBlastX LTR_Gypsy 175933 176025 24 + . . scaffold448 WUBlastX LTR_Gypsy-Cigr 176037 177395 768 + . . scaffold448 GLEAN mRNA 177732 177938 1 - . ID=CGI_10024935; scaffold448 GLEAN promoter 177939 178938 1 - . ID=CGI_10024935; scaffold448 WUBlastX LTR_Ngaro 184086 184358 109 - . . scaffold448 WUBlastX LTR_Ngaro 184089 184265 147 - . . scaffold448 WUBlastX LTR_Ngaro 184101 184316 123 - . . scaffold448 WUBlastX LINE_Penelope 189587 189805 123 + . . scaffold448 WUBlastX LINE_Penelope 189596 189877 58 + . . scaffold448 WUBlastX LINE_Penelope 189916 190542 67 + . . scaffold448 TRF Tandem_Repeat 210446 210550 102 + . . scaffold448 TRF Tandem_Repeat 210743 210888 118 + . . scaffold448 GLEAN promoter 212388 213387 0.999613 + . ID=CGI_10024936; scaffold448 WUBlastX DNA_Kolobok-Hyd 213247 213768 25 + . . scaffold448 WUBlastX DNA_Kolobok-Hyd 213343 213768 43 + . . scaffold448 GLEAN mRNA 213388 215689 0.999613 + . ID=CGI_10024936; scaffold448 GLEAN promoter 238287 239286 0.999676 + . ID=CGI_10024937; scaffold448 GLEAN mRNA 239287 241759 0.999676 + . ID=CGI_10024937; scaffold448 TRF Tandem_Repeat 241844 241877 59 + . . scaffold448 TRF Tandem_Repeat 253719 253761 86 + . . scaffold448 GLEAN promoter 307257 308256 0.998692 + . ID=CGI_10024938; scaffold448 GLEAN promoter 308246 309245 0.48146 + . ID=CGI_10024939; scaffold448 GLEAN mRNA 308257 308877 0.998692 + . ID=CGI_10024938; scaffold448 WUBlastX DNA_Sola 308997 309731 205 + . . scaffold448 GLEAN mRNA 309246 309755 0.48146 + . ID=CGI_10024939; scaffold448 WUBlastX DNA_Maverick 341871 342989 561 - . . scaffold448 WUBlastX DNA_Maverick 341928 342836 629 - . . scaffold448 WUBlastX DNA_Maverick 342987 343208 110 - . . scaffold448 WUBlastX DNA_Maverick 343329 343637 187 - . . scaffold448 WUBlastX DNA_Maverick 343585 344199 64 - . . scaffold448 WUBlastX DNA_Maverick 343585 344013 124 - . . scaffold448 WUBlastX DNA_Maverick 344318 345628 165 - . . scaffold448 GLEAN mRNA 347334 347756 0.983896 - . ID=CGI_10024941; scaffold448 GLEAN promoter 347757 348756 0.983896 - . ID=CGI_10024941; scaffold448 GLEAN mRNA 350540 352205 0.504437 - . ID=CGI_10024942; scaffold448 GLEAN promoter 352206 353205 0.504437 - . ID=CGI_10024942; scaffold448 TRF Tandem_Repeat 354094 354126 66 + . . scaffold448 TRF Tandem_Repeat 367624 367655 64 + . . scaffold448 WUBlastX LTR_Gypsy 379301 379720 76 - . . scaffold448 WUBlastX LTR_Gypsy 379442 379771 73 - . . scaffold448 WUBlastX LTR_ERV1 379442 379954 64 - . . scaffold448 WUBlastX LTR_Gypsy 379442 380140 54 - . . scaffold448 WUBlastX LTR_Gypsy 379442 379717 143 - . . scaffold448 WUBlastX LTR_Gypsy 380073 380489 263 - . . scaffold448 WUBlastX LTR_Gypsy 380085 380918 241 - . . scaffold448 WUBlastX LTR_Gypsy 381059 381589 81 - . . scaffold448 WUBlastX LTR_Gypsy 381452 381733 28 - . . scaffold448 WUBlastX LTR_Gypsy 381458 381640 45 - . . scaffold448 WUBlastX LTR_Gypsy-Cigr 382223 382480 83 - . . scaffold448 WUBlastX LINE_L1-Tx1 383236 383841 244 + . . scaffold448 WUBlastX LINE_L1-Tx1 383810 384049 149 + . . scaffold448 WUBlastX LINE_L1-Tx1 383816 384184 67 + . . scaffold448 WUBlastX LINE_L1-Tx1 385890 386540 338 + . . scaffold448 WUBlastX LINE_L1-Tx1 385932 386654 193 + . . scaffold448 WUBlastX LINE_L1-Tx1 387711 387950 26 + . . scaffold448 WUBlastX LINE_L1 388202 388363 29 + . . scaffold448 WUBlastX LINE_L1-Tx1 388317 388787 139 + . . scaffold448 WUBlastX LINE_L1-Tx1 388371 388871 52 + . . scaffold448 WUBlastX DNA_PiggyBac 389843 389983 44 + . . scaffold448 WUBlastX DNA_PiggyBac 390888 391178 45 + . . scaffold448 WUBlastX DNA_PiggyBac 390933 391283 66 + . . scaffold448 WUBlastX DNA_PiggyBac 390933 391202 67 + . . scaffold448 WUBlastX DNA_PiggyBac 391433 391675 32 + . . scaffold448 WUBlastX DNA_PiggyBac 391466 391588 44 + . . scaffold448 GLEAN mRNA 401734 414576 0.998615 - . ID=CGI_10024943; scaffold448 TRF Tandem_Repeat 402127 402183 114 + . . scaffold448 TRF Tandem_Repeat 404208 404261 108 + . . scaffold448 TRF Tandem_Repeat 409461 409494 68 + . . scaffold448 GLEAN promoter 414577 415576 0.998615 - . ID=CGI_10024943; scaffold448 GLEAN promoter 417684 418683 0.548785 + . ID=CGI_10024944; scaffold448 GLEAN mRNA 418684 429075 0.548785 + . ID=CGI_10024944; scaffold448 TRF Tandem_Repeat 420091 420125 70 + . . scaffold448 TRF Tandem_Repeat 422986 423122 177 + . . scaffold448 TRF Tandem_Repeat 427230 427265 72 + . . scaffold448 GLEAN promoter 432796 433795 0.754586 + . ID=CGI_10024946; scaffold448 GLEAN mRNA 433796 437299 0.754586 + . ID=CGI_10024946; scaffold448 GLEAN promoter 436312 437311 0.999262 + . ID=CGI_10024947; scaffold448 GLEAN mRNA 437312 438248 0.999262 + . ID=CGI_10024947; scaffold448 GLEAN promoter 437345 438344 0.993907 + . ID=CGI_10024948; scaffold448 GLEAN mRNA 438345 447382 0.993907 + . ID=CGI_10024948; scaffold448 TRF Tandem_Repeat 439509 439561 65 + . . scaffold448 TRF Tandem_Repeat 439681 440194 913 + . . scaffold448 TRF Tandem_Repeat 439748 440005 141 + . . scaffold448 TRF Tandem_Repeat 447661 447711 57 + . . scaffold448 TRF Tandem_Repeat 447666 447708 59 + . . scaffold448 GLEAN mRNA 483477 483638 1 - . ID=CGI_10024949; scaffold448 GLEAN promoter 483639 484638 1 - . ID=CGI_10024949; scaffold448 TRF Tandem_Repeat 484684 484772 178 + . . scaffold448 GLEAN mRNA 485789 498658 0.650991 - . ID=CGI_10024950; scaffold448 TRF Tandem_Repeat 498130 498193 103 + . . scaffold448 GLEAN promoter 498659 499658 0.650991 - . ID=CGI_10024950; scaffold448 TRF Tandem_Repeat 504577 504721 98 + . . scaffold448 TRF Tandem_Repeat 504577 504816 248 + . . scaffold448 TRF Tandem_Repeat 507707 507805 74 + . . scaffold448 GLEAN promoter 515028 516027 0.333805 + . ID=CGI_10024951; scaffold448 GLEAN mRNA 516028 525346 0.333805 + . ID=CGI_10024951; scaffold448 TRF Tandem_Repeat 518300 518438 214 + . . scaffold448 WUBlastX DNA_TcMar-Tc1 528157 528639 247 - . . scaffold448 WUBlastX DNA_TcMar-Tc1 528208 528612 247 - . . scaffold448 WUBlastX DNA_TcMar-Tc1 528633 528869 92 - . . scaffold448 WUBlastX DNA_TcMar-Tc1 528642 528923 49 - . . scaffold448 GLEAN mRNA 529241 532470 0.999666 - . ID=CGI_10024952; scaffold448 GLEAN promoter 532471 533470 0.999666 - . ID=CGI_10024952; scaffold448 TRF Tandem_Repeat 539116 539158 68 + . . scaffold448 TRF Tandem_Repeat 543429 543465 74 + . . scaffold448 TRF Tandem_Repeat 544685 544738 99 + . . scaffold448 TRF Tandem_Repeat 549843 549991 262 + . . scaffold448 TRF Tandem_Repeat 574468 574502 52 + . . scaffold448 TRF Tandem_Repeat 574683 574733 102 + . . scaffold448 TRF Tandem_Repeat 577146 577212 80 + . . scaffold448 TRF Tandem_Repeat 578605 578683 158 + . . scaffold448 WUBlastX LTR_Ngaro 583811 584512 169 + . . scaffold448 WUBlastX LTR_Ngaro 584060 584656 104 + . . scaffold448 WUBlastX LTR_Ngaro 600699 600878 96 + . . scaffold448 TRF Tandem_Repeat 639176 639209 68 + . . scaffold448 GLEAN promoter 649012 650011 0.999848 + . ID=CGI_10024954; scaffold448 GLEAN mRNA 650012 656192 0.999848 + . ID=CGI_10024954; scaffold448 TRF Tandem_Repeat 654807 654843 74 + . . scaffold448 GLEAN mRNA 656961 660042 0.920529 - . ID=CGI_10024955; scaffold448 GLEAN promoter 660043 661042 0.920529 - . ID=CGI_10024955; scaffold448 GLEAN promoter 660374 661373 0.999415 + . ID=CGI_10024956; scaffold448 GLEAN mRNA 661374 667502 0.999415 + . ID=CGI_10024956; scaffold448 TRF Tandem_Repeat 663561 663617 114 + . . scaffold448 GLEAN mRNA 669825 672011 0.999677 - . ID=CGI_10024957; scaffold448 GLEAN promoter 672012 673011 0.999677 - . ID=CGI_10024957; scaffold448 WUBlastX DNA_TcMar-Marin 693474 693659 57 - . . scaffold448 WUBlastX DNA_TcMar-Marin 693675 693755 24 - . . scaffold448 WUBlastX DNA_TcMar-Marin 694547 694684 46 - . . scaffold448 WUBlastX DNA_TcMar-Marin 694684 694944 52 - . . scaffold448 GLEAN mRNA 706468 711242 0.790052 - . ID=CGI_10024958; scaffold448 GLEAN promoter 711243 712242 0.790052 - . ID=CGI_10024958; scaffold448 TRF Tandem_Repeat 717179 717205 54 + . . scaffold448 TRF Tandem_Repeat 717233 717263 53 + . . scaffold448 WUBlastX DNA_En-Spm 719871 721013 273 + . . scaffold448 WUBlastX DNA_En-Spm 720477 721922 140 + . . scaffold448 WUBlastX DNA_En-Spm 720648 721520 279 + . . scaffold448 WUBlastX DNA_En-Spm 720825 721667 299 + . . scaffold448 WUBlastX DNA_Academ 722829 724295 122 - . . scaffold448 WUBlastX DNA_En-Spm 727035 728480 140 - . . scaffold448 WUBlastX DNA_En-Spm 727290 728132 299 - . . scaffold448 WUBlastX DNA_En-Spm 727437 728309 279 - . . scaffold448 WUBlastX DNA_En-Spm 727944 729086 273 - . . scaffold448 GLEAN promoter 731392 732391 1 + . ID=CGI_10024960; scaffold448 GLEAN promoter 732317 733316 0.999906 + . ID=CGI_10024961; scaffold448 GLEAN mRNA 732392 733045 1 + . ID=CGI_10024960; scaffold448 GLEAN mRNA 733317 752631 0.999906 + . ID=CGI_10024961; scaffold448 TRF Tandem_Repeat 733741 733877 184 + . . scaffold448 TRF Tandem_Repeat 738051 738095 65 + . . scaffold448 TRF Tandem_Repeat 746520 746561 68 + . . scaffold448 TRF Tandem_Repeat 746521 746558 51 + . . scaffold448 GLEAN promoter 752181 753180 0.999624 + . ID=CGI_10024962; scaffold448 GLEAN mRNA 753181 781029 0.999624 + . ID=CGI_10024962; scaffold448 TRF Tandem_Repeat 753598 753628 62 + . . scaffold448 TRF Tandem_Repeat 761673 761719 57 + . . scaffold448 TRF Tandem_Repeat 777506 778807 1559 + . . scaffold448 TRF Tandem_Repeat 778845 779922 1238 + . . scaffold448 TRF Tandem_Repeat 783593 783888 560 + . . scaffold448 TRF Tandem_Repeat 786202 786241 80 + . . scaffold448 GLEAN mRNA 825230 836681 0.790053 - . ID=CGI_10024963; scaffold448 TRF Tandem_Repeat 826180 826386 224 + . . scaffold448 TRF Tandem_Repeat 826180 826385 306 + . . scaffold448 TRF Tandem_Repeat 827255 827523 341 + . . scaffold448 GLEAN promoter 836682 837681 0.790053 - . ID=CGI_10024963; scaffold448 GLEAN promoter 839377 840376 1 + . ID=CGI_10024964; scaffold448 TRF Tandem_Repeat 839923 839958 72 + . . scaffold448 GLEAN mRNA 840377 843063 1 + . ID=CGI_10024964; scaffold448 TRF Tandem_Repeat 841164 841205 84 + . . scaffold448 TRF Tandem_Repeat 848598 848636 78 + . . scaffold448 GLEAN promoter 853522 854521 1 + . ID=CGI_10024965; scaffold448 GLEAN mRNA 854522 865147 1 + . ID=CGI_10024965; scaffold448 GLEAN mRNA 865948 875578 0.999949 - . ID=CGI_10024966; scaffold448 TRF Tandem_Repeat 870126 870159 61 + . . scaffold448 TRF Tandem_Repeat 871782 871809 56 + . . scaffold448 GLEAN promoter 875579 876578 0.999949 - . ID=CGI_10024966; scaffold448 TRF Tandem_Repeat 879998 880264 85 + . . scaffold448 TRF Tandem_Repeat 880088 880205 110 + . . scaffold448 TRF Tandem_Repeat 880101 880222 146 + . . scaffold448 TRF Tandem_Repeat 880122 880281 112 + . . scaffold448 TRF Tandem_Repeat 880193 880600 196 + . . scaffold448 TRF Tandem_Repeat 880243 880350 54 + . . scaffold448 TRF Tandem_Repeat 880305 880637 225 + . . scaffold448 TRF Tandem_Repeat 880326 880578 180 + . . scaffold448 TRF Tandem_Repeat 880326 880521 82 + . . scaffold448 TRF Tandem_Repeat 880606 880691 52 + . . scaffold448 TRF Tandem_Repeat 880794 880824 62 + . . scaffold448 TRF Tandem_Repeat 880827 881157 475 + . . scaffold448 TRF Tandem_Repeat 881023 881122 110 + . . scaffold448 TRF Tandem_Repeat 881060 881142 58 + . . scaffold448 TRF Tandem_Repeat 881326 881377 95 + . . scaffold448 GLEAN mRNA 882723 888166 0.681651 - . ID=CGI_10024967; scaffold448 TRF Tandem_Repeat 883699 884043 310 + . . scaffold448 TRF Tandem_Repeat 883699 884043 344 + . . scaffold448 GLEAN promoter 888167 889166 0.681651 - . ID=CGI_10024967; scaffold448 TRF Tandem_Repeat 888880 889331 591 + . . scaffold448 GLEAN mRNA 889793 891605 0.708672 - . ID=CGI_10024968; scaffold448 GLEAN promoter 891606 892605 0.708672 - . ID=CGI_10024968; scaffold448 TRF Tandem_Repeat 904459 904503 90 + . . scaffold448 GLEAN mRNA 904562 910075 1 - . ID=CGI_10024969; scaffold448 GLEAN promoter 910076 911075 1 - . ID=CGI_10024969; scaffold448 GLEAN mRNA 913300 944326 0.986391 - . ID=CGI_10024970; scaffold448 GLEAN promoter 918409 919408 0.988135 + . ID=CGI_10024971; scaffold448 GLEAN mRNA 919409 931311 0.988135 + . ID=CGI_10024971; scaffold448 TRF Tandem_Repeat 921705 921774 140 + . . scaffold448 TRF Tandem_Repeat 941743 941860 92 + . . scaffold448 TRF Tandem_Repeat 941785 941872 176 + . . scaffold448 GLEAN promoter 944327 945326 0.986391 - . ID=CGI_10024970; scaffold448 TRF Tandem_Repeat 950526 950571 58 + . . scaffold448 GLEAN promoter 957907 958906 0.819728 + . ID=CGI_10024972; scaffold448 GLEAN mRNA 958907 969303 0.819728 + . ID=CGI_10024972; scaffold448 TRF Tandem_Repeat 964607 964688 157 + . . scaffold448 TRF Tandem_Repeat 970841 970913 128 + . . scaffold448 GLEAN promoter 973397 974396 0.999412 + . ID=CGI_10024973; scaffold448 GLEAN mRNA 974397 975365 0.999412 + . ID=CGI_10024973; scaffold448 GLEAN promoter 977094 978093 1 + . ID=CGI_10024974; scaffold448 GLEAN mRNA 978094 987013 1 + . ID=CGI_10024974; scaffold448 TRF Tandem_Repeat 983617 983658 59 + . . scaffold448 GLEAN mRNA 987580 989301 1 - . ID=CGI_10024975; scaffold448 GLEAN promoter 989302 990301 1 - . ID=CGI_10024975; scaffold448 WUBlastX LTR_DIRS 990460 991068 245 - . . scaffold448 TRF Tandem_Repeat 991498 991537 80 + . . scaffold448 TRF Tandem_Repeat 991924 991987 53 + . . scaffold448 WUBlastX LTR_DIRS 992181 992633 306 - . . scaffold448 WUBlastX LTR_DIRS 992519 992659 37 - . . scaffold448 WUBlastX LTR_DIRS 992662 992889 139 - . . scaffold448 WUBlastX LTR_Gypsy 994140 994172 22 - . . scaffold448 WUBlastX LTR_DIRS 994184 995764 1099 - . . scaffold448 WUBlastX LTR_Gypsy 995024 996226 70 - . . scaffold448 WUBlastX LTR_Gypsy 995033 995992 92 - . . scaffold448 WUBlastX LTR_Gypsy 996232 996372 25 - . . scaffold448 WUBlastX LTR_Gypsy 996361 996459 20 - . . scaffold448 WUBlastX LINE_L1-Tx1 1002569 1002673 63 - . . scaffold448 WUBlastX LINE_L1-Tx1 1002672 1003406 308 - . . scaffold448 WUBlastX LINE_L1-Tx1 1003447 1004073 122 - . . scaffold448 WUBlastX LINE_L1-Tx1 1003447 1003941 178 - . . scaffold448 TRF Tandem_Repeat 1008966 1009000 52 + . . scaffold448 GLEAN mRNA 1017939 1018511 1 - . ID=CGI_10024976; scaffold448 GLEAN promoter 1018512 1018568 1 - . ID=CGI_10024976; scaffold449 GLEAN promoter 1162 2161 0.999019 + . ID=CGI_10010960; scaffold449 TRF Tandem_Repeat 1954 2040 113 + . . scaffold449 GLEAN mRNA 2162 25316 0.999019 + . ID=CGI_10010960; scaffold449 TRF Tandem_Repeat 33933 34059 139 + . . scaffold449 TRF Tandem_Repeat 33944 37504 759 + . . scaffold449 TRF Tandem_Repeat 33946 34309 271 + . . scaffold449 TRF Tandem_Repeat 34007 34442 196 + . . scaffold449 TRF Tandem_Repeat 34137 34537 263 + . . scaffold449 TRF Tandem_Repeat 34322 34927 434 + . . scaffold449 TRF Tandem_Repeat 34622 34817 232 + . . scaffold449 TRF Tandem_Repeat 34674 37504 1332 + . . scaffold449 TRF Tandem_Repeat 34770 34980 145 + . . scaffold449 TRF Tandem_Repeat 35205 35332 121 + . . scaffold449 TRF Tandem_Repeat 35418 37340 787 + . . scaffold449 TRF Tandem_Repeat 35491 36214 311 + . . scaffold449 TRF Tandem_Repeat 35542 35833 199 + . . scaffold449 TRF Tandem_Repeat 35813 37393 388 + . . scaffold449 TRF Tandem_Repeat 36180 36588 418 + . . scaffold449 TRF Tandem_Repeat 36211 36842 400 + . . scaffold449 TRF Tandem_Repeat 36782 37580 669 + . . scaffold449 TRF Tandem_Repeat 38368 38581 288 + . . scaffold449 TRF Tandem_Repeat 38524 38863 176 + . . scaffold449 GLEAN promoter 39209 40208 0.363705 + . ID=CGI_10010961; scaffold449 GLEAN mRNA 40209 80556 0.363705 + . ID=CGI_10010961; scaffold449 TRF Tandem_Repeat 60458 60513 112 + . . scaffold449 WUBlastX LINE_RTE-X 107168 107542 92 + . . scaffold449 TRF Tandem_Repeat 108847 109604 1087 + . . scaffold449 TRF Tandem_Repeat 117728 117785 107 + . . scaffold449 TRF Tandem_Repeat 127319 127386 136 + . . scaffold449 WUBlastX LINE_RTE-X 129236 129919 81 + . . scaffold449 WUBlastX LINE_RTE-X 129236 129784 96 + . . scaffold449 TRF Tandem_Repeat 131244 131295 104 + . . scaffold449 WUBlastX LTR_Gypsy-Cigr 133736 134302 138 - . . scaffold449 WUBlastX LTR_Gypsy 133883 134410 94 - . . scaffold449 WUBlastX LINE_L1 136583 137158 236 + . . scaffold449 WUBlastX LINE_RTE-X 137417 137932 105 + . . scaffold449 WUBlastX LINE_RTE-X 137477 138019 76 + . . scaffold449 WUBlastX LINE_RTE-X 138998 139666 68 + . . scaffold449 WUBlastX LINE_RTE-X 139100 139975 103 + . . scaffold449 WUBlastX LINE_L1-Tx1 142068 142883 66 - . . scaffold449 WUBlastX LINE_L1-Tx1 142212 142784 84 - . . scaffold449 WUBlastX LINE_L1-Tx1 142317 142889 96 - . . scaffold449 WUBlastX LINE_L1-Tx1 144582 144818 47 - . . scaffold449 WUBlastX LINE_L1 144681 145679 140 - . . scaffold449 WUBlastX LINE_L1-Tx1 145137 145673 183 - . . scaffold449 WUBlastX LINE_L1 145352 145912 66 - . . scaffold449 WUBlastX LINE_L1-Tx1 145915 146127 41 - . . scaffold449 WUBlastX LINE_L1 145969 146160 52 - . . scaffold449 WUBlastX LINE_L1 146962 147177 22 - . . scaffold449 TRF Tandem_Repeat 181379 181410 55 + . . scaffold449 WUBlastX LINE_L1 183078 183110 22 - . . scaffold449 WUBlastX LINE_CR1-L2 183725 185533 810 - . . scaffold449 WUBlastX LINE_L2 183776 185857 500 - . . scaffold449 GLEAN mRNA 184691 200379 0.558382 - . ID=CGI_10010963; scaffold449 WUBlastX LINE_CR1-L2 185579 186016 119 - . . scaffold449 TRF Tandem_Repeat 193138 193201 51 + . . scaffold449 TRF Tandem_Repeat 193271 193394 59 + . . scaffold449 TRF Tandem_Repeat 193384 193465 51 + . . scaffold449 TRF Tandem_Repeat 193540 193633 52 + . . scaffold449 TRF Tandem_Repeat 193586 193679 72 + . . scaffold449 TRF Tandem_Repeat 193845 193925 51 + . . scaffold449 TRF Tandem_Repeat 194517 195056 873 + . . scaffold449 GLEAN promoter 200380 201379 0.558382 - . ID=CGI_10010963; scaffold449 TRF Tandem_Repeat 201197 201256 120 + . . scaffold449 WUBlastX LINE_CR1-L2 203615 206290 1350 - . . scaffold449 WUBlastX LINE_L2 206374 206460 22 - . . scaffold449 GLEAN promoter 214109 215108 1 + . ID=CGI_10010964; scaffold449 GLEAN mRNA 215109 216155 1 + . ID=CGI_10010964; scaffold449 GLEAN mRNA 218941 241658 0.999351 - . ID=CGI_10010965; scaffold449 GLEAN promoter 232595 233594 0.998817 + . ID=CGI_10010966; scaffold449 GLEAN mRNA 233595 234479 0.998817 + . ID=CGI_10010966; scaffold449 TRF Tandem_Repeat 237390 238052 1019 + . . scaffold449 GLEAN promoter 241659 242658 0.999351 - . ID=CGI_10010965; scaffold449 GLEAN mRNA 242961 264276 0.604931 - . ID=CGI_10010967; scaffold449 TRF Tandem_Repeat 249902 250989 1556 + . . scaffold449 TRF Tandem_Repeat 258553 258770 267 + . . scaffold449 TRF Tandem_Repeat 262579 262623 90 + . . scaffold449 GLEAN promoter 264277 265276 0.604931 - . ID=CGI_10010967; scaffold449 TRF Tandem_Repeat 272811 272846 72 + . . scaffold449 WUBlastX LINE_L2 278445 278963 31 - . . scaffold449 WUBlastX LINE_CR1-L2 278692 278781 58 - . . scaffold449 WUBlastX LINE_L2 278988 279287 70 - . . scaffold450 TRF Tandem_Repeat 20921 20972 104 + . . scaffold450 TRF Tandem_Repeat 23964 24024 77 + . . scaffold450 TRF Tandem_Repeat 30465 30504 71 + . . scaffold450 TRF Tandem_Repeat 37887 37952 96 + . . scaffold450 TRF Tandem_Repeat 38936 38980 81 + . . scaffold450 TRF Tandem_Repeat 42105 42250 154 + . . scaffold450 TRF Tandem_Repeat 42120 42240 181 + . . scaffold450 TRF Tandem_Repeat 42669 42714 92 + . . scaffold450 TRF Tandem_Repeat 43818 43854 74 + . . scaffold450 TRF Tandem_Repeat 45395 45517 185 + . . scaffold450 TRF Tandem_Repeat 45405 45533 130 + . . scaffold450 TRF Tandem_Repeat 46940 46980 82 + . . scaffold450 TRF Tandem_Repeat 48597 48647 57 + . . scaffold450 GLEAN promoter 56083 57082 1 + . ID=CGI_10010318; scaffold450 GLEAN mRNA 57083 65254 1 + . ID=CGI_10010318; scaffold450 GLEAN mRNA 66067 80656 0.505252 - . ID=CGI_10010319; scaffold450 TRF Tandem_Repeat 67987 68083 90 + . . scaffold450 TRF Tandem_Repeat 68437 68563 218 + . . scaffold450 TRF Tandem_Repeat 73187 73222 72 + . . scaffold450 TRF Tandem_Repeat 74250 74276 54 + . . scaffold450 TRF Tandem_Repeat 76450 76487 58 + . . scaffold450 TRF Tandem_Repeat 78011 78046 63 + . . scaffold450 TRF Tandem_Repeat 78045 78091 94 + . . scaffold450 WUBlastX LTR_Gypsy 79714 79764 21 - . . scaffold450 WUBlastX LTR_Gypsy 79735 80106 109 - . . scaffold450 WUBlastX LTR_Gypsy 79786 80043 141 - . . scaffold450 GLEAN promoter 80657 81656 0.505252 - . ID=CGI_10010319; scaffold450 GLEAN mRNA 80983 91016 0.937783 - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 83186 83233 87 + . . scaffold450 TRF Tandem_Repeat 89096 89168 58 + . . scaffold450 TRF Tandem_Repeat 89117 89200 70 + . . scaffold450 TRF Tandem_Repeat 89118 89196 68 + . . scaffold450 TRF Tandem_Repeat 89126 89202 59 + . . scaffold450 GLEAN promoter 91017 92016 0.937783 - . ID=CGI_10010320; scaffold450 TRF Tandem_Repeat 91091 91134 54 + . . scaffold450 TRF Tandem_Repeat 91908 92007 59 + . . scaffold450 TRF Tandem_Repeat 91909 91986 59 + . . scaffold450 TRF Tandem_Repeat 91925 91998 61 + . . scaffold450 TRF Tandem_Repeat 96322 96492 292 + . . scaffold450 GLEAN mRNA 106099 115995 0.996213 - . ID=CGI_10010321; scaffold450 WUBlastX LTR_DIRS 111724 111993 154 + . . scaffold450 GLEAN promoter 115996 116995 0.996213 - . ID=CGI_10010321; scaffold450 TRF Tandem_Repeat 116752 116866 90 + . . scaffold450 TRF Tandem_Repeat 119645 119749 138 + . . scaffold450 WUBlastX LINE_L1-Tx1 125755 125934 91 - . . scaffold450 WUBlastX LINE_L1 125857 125958 30 - . . scaffold450 WUBlastX LINE_L1-Tx1 126164 126736 115 - . . scaffold450 WUBlastX LINE_L1-Tx1 126251 126739 147 - . . scaffold450 WUBlastX LINE_L1-Tx1 126709 127071 183 - . . scaffold450 WUBlastX LINE_L1 126736 127146 80 - . . scaffold450 TRF Tandem_Repeat 129810 129853 61 + . . scaffold450 TRF Tandem_Repeat 129811 129849 51 + . . scaffold450 TRF Tandem_Repeat 135911 135974 119 + . . scaffold450 TRF Tandem_Repeat 136130 136156 54 + . . scaffold450 WUBlastX DNA_hAT-Tip100 153184 153360 60 + . . scaffold450 WUBlastX DNA_hAT-Tip100 153229 154599 641 + . . scaffold450 WUBlastX DNA_hAT-Tip100 154622 155221 298 + . . scaffold450 WUBlastX DNA_hAT-Tip100 154937 155314 67 + . . scaffold450 GLEAN mRNA 157444 164727 0.999714 - . ID=CGI_10010322; scaffold450 TRF Tandem_Repeat 158531 158609 95 + . . scaffold450 TRF Tandem_Repeat 159052 159151 119 + . . scaffold450 TRF Tandem_Repeat 159286 159321 72 + . . scaffold450 TRF Tandem_Repeat 159965 159996 64 + . . scaffold450 TRF Tandem_Repeat 160820 160879 120 + . . scaffold450 TRF Tandem_Repeat 160821 161040 77 + . . scaffold450 TRF Tandem_Repeat 160825 161032 67 + . . scaffold450 GLEAN promoter 164728 165727 0.999714 - . ID=CGI_10010322; scaffold450 GLEAN mRNA 167272 168324 0.999741 - . ID=CGI_10010323; scaffold450 GLEAN promoter 168325 169324 0.999741 - . ID=CGI_10010323; scaffold450 TRF Tandem_Repeat 170975 171021 94 + . . scaffold450 TRF Tandem_Repeat 174473 174530 116 + . . scaffold450 GLEAN promoter 175024 176023 1 + . ID=CGI_10010325; scaffold450 GLEAN mRNA 176024 178923 1 + . ID=CGI_10010325; scaffold450 TRF Tandem_Repeat 181507 181539 66 + . . scaffold450 TRF Tandem_Repeat 187774 187805 64 + . . scaffold450 TRF Tandem_Repeat 218692 218716 50 + . . scaffold450 TRF Tandem_Repeat 218720 218746 54 + . . scaffold450 TRF Tandem_Repeat 220682 220738 114 + . . scaffold450 GLEAN mRNA 223376 232039 0.967355 - . ID=CGI_10010326; scaffold450 TRF Tandem_Repeat 224408 224455 96 + . . scaffold450 TRF Tandem_Repeat 228748 228792 72 + . . scaffold450 GLEAN promoter 232040 233039 0.967355 - . ID=CGI_10010326; scaffold450 WUBlastX LINE_RTE-X 233149 233382 63 - . . scaffold450 TRF Tandem_Repeat 246064 246097 68 + . . scaffold450 TRF Tandem_Repeat 257612 257645 68 + . . scaffold451 GLEAN mRNA 72 2518 1 - . ID=CGI_10004425; scaffold451 GLEAN promoter 2519 3518 1 - . ID=CGI_10004425; scaffold451 TRF Tandem_Repeat 21955 22016 124 + . . scaffold451 TRF Tandem_Repeat 27978 28025 96 + . . scaffold451 TRF Tandem_Repeat 32044 32092 98 + . . scaffold451 TRF Tandem_Repeat 32611 32653 86 + . . scaffold451 TRF Tandem_Repeat 38547 38638 76 + . . scaffold451 TRF Tandem_Repeat 50146 50170 50 + . . scaffold451 TRF Tandem_Repeat 52407 52460 108 + . . scaffold451 GLEAN promoter 53212 54211 1 + . ID=CGI_10004426; scaffold451 GLEAN mRNA 54212 55411 1 + . ID=CGI_10004426; scaffold451 TRF Tandem_Repeat 58218 58260 77 + . . scaffold451 GLEAN promoter 61161 62160 0.860758 + . ID=CGI_10004427; scaffold451 GLEAN mRNA 62161 92007 0.860758 + . ID=CGI_10004427; scaffold451 WUBlastX LTR_Gypsy-Cigr 63215 63703 68 + . . scaffold451 WUBlastX LTR_Gypsy-Cigr 63260 63817 49 + . . scaffold451 WUBlastX LTR_Gypsy 63962 64027 20 + . . scaffold451 WUBlastX LTR_Gypsy 63980 64261 56 + . . scaffold451 WUBlastX LTR_Copia 64255 64506 36 + . . scaffold451 WUBlastX LTR_Gypsy 64351 66273 1003 + . . scaffold451 WUBlastX LTR_Gypsy 64759 66339 1022 + . . scaffold451 WUBlastX LTR_Gypsy 66694 66807 31 + . . scaffold451 WUBlastX LTR_Gypsy 66730 66807 36 + . . scaffold451 WUBlastX LTR_Gypsy 66788 67033 43 + . . scaffold451 WUBlastX LTR_Gypsy 66845 67234 89 + . . scaffold451 WUBlastX LTR_Gypsy 66854 67369 85 + . . scaffold451 WUBlastX LTR_Gypsy 66854 67153 120 + . . scaffold451 WUBlastX LTR_Gypsy 67470 67535 20 + . . scaffold451 WUBlastX LINE_L1 87681 87845 62 + . . scaffold451 WUBlastX LINE_L1-Tx1 87696 88574 24 + . . scaffold451 WUBlastX LINE_L1 87696 88256 54 + . . scaffold451 WUBlastX LINE_L1-Tx1 88494 88589 26 + . . scaffold451 WUBlastX LTR_Gypsy 96299 96970 64 - . . scaffold451 WUBlastX LTR_Gypsy 96479 96988 298 - . . scaffold451 WUBlastX LTR_Gypsy 96482 97084 173 - . . scaffold452 TRF Tandem_Repeat 1165 1190 52 + . . scaffold452 TRF Tandem_Repeat 4543 4576 68 + . . scaffold452 TRF Tandem_Repeat 4640 4690 75 + . . scaffold452 TRF Tandem_Repeat 7109 7147 51 + . . scaffold452 TRF Tandem_Repeat 7113 7164 77 + . . scaffold452 TRF Tandem_Repeat 9188 9254 134 + . . scaffold452 WUBlastX LINE_RTE-X 10768 10884 48 + . . scaffold452 WUBlastX LINE_RTE-X 10804 10929 56 + . . scaffold452 WUBlastX LINE_RTE-X 11817 12014 20 + . . scaffold452 WUBlastX LINE_RTE-X 11817 11924 23 + . . scaffold452 WUBlastX LINE_RTE-X 12038 12199 32 + . . scaffold452 WUBlastX LINE_RTE-X 12205 12432 95 + . . scaffold452 WUBlastX LINE_RTE-X 12205 12483 62 + . . scaffold452 TRF Tandem_Repeat 15359 15452 95 + . . scaffold452 TRF Tandem_Repeat 15374 15449 62 + . . scaffold452 TRF Tandem_Repeat 15685 15778 95 + . . scaffold452 TRF Tandem_Repeat 15700 15775 62 + . . scaffold452 TRF Tandem_Repeat 15864 17611 2135 + . . scaffold452 GLEAN promoter 44306 45305 0.998409 + . ID=CGI_10007648; scaffold452 GLEAN promoter 44784 45783 0.999037 + . ID=CGI_10007649; scaffold452 GLEAN mRNA 45306 45575 0.998409 + . ID=CGI_10007648; scaffold452 GLEAN mRNA 45784 53029 0.999037 + . ID=CGI_10007649; scaffold452 GLEAN mRNA 53558 54290 1 - . ID=CGI_10007650; scaffold452 GLEAN promoter 54291 55290 1 - . ID=CGI_10007650; scaffold452 TRF Tandem_Repeat 57396 57424 58 + . . scaffold452 GLEAN promoter 64649 65648 0.999624 + . ID=CGI_10007651; scaffold452 GLEAN mRNA 65649 76030 0.999624 + . ID=CGI_10007651; scaffold452 TRF Tandem_Repeat 66051 66347 475 + . . scaffold452 GLEAN promoter 76778 77777 0.973843 + . ID=CGI_10007652; scaffold452 GLEAN mRNA 77778 83345 0.973843 + . ID=CGI_10007652; scaffold452 TRF Tandem_Repeat 79855 80103 169 + . . scaffold452 TRF Tandem_Repeat 79881 80103 200 + . . scaffold452 TRF Tandem_Repeat 80407 80967 529 + . . scaffold452 TRF Tandem_Repeat 80438 80967 410 + . . scaffold452 TRF Tandem_Repeat 80442 80967 384 + . . scaffold452 GLEAN promoter 84944 85943 1 + . ID=CGI_10007653; scaffold452 GLEAN mRNA 85944 89793 1 + . ID=CGI_10007653; scaffold452 GLEAN mRNA 91069 95502 0.999993 - . ID=CGI_10007654; scaffold452 TRF Tandem_Repeat 92519 93992 2462 + . . scaffold452 GLEAN promoter 95503 96502 0.999993 - . ID=CGI_10007654; scaffold452 GLEAN mRNA 95598 107986 0.992435 - . ID=CGI_10007655; scaffold452 TRF Tandem_Repeat 95661 95854 324 + . . scaffold452 TRF Tandem_Repeat 96106 96365 475 + . . scaffold452 TRF Tandem_Repeat 97109 98231 2039 + . . scaffold452 TRF Tandem_Repeat 102854 102886 57 + . . scaffold452 GLEAN promoter 107987 108986 0.992435 - . ID=CGI_10007655; scaffold452 GLEAN promoter 115417 116416 0.99999 + . ID=CGI_10007656; scaffold452 GLEAN mRNA 116417 122559 0.99999 + . ID=CGI_10007656; scaffold452 TRF Tandem_Repeat 125750 125808 118 + . . scaffold452 GLEAN mRNA 125807 138886 1 - . ID=CGI_10007657; scaffold452 TRF Tandem_Repeat 130313 130352 71 + . . scaffold452 TRF Tandem_Repeat 130420 130964 614 + . . scaffold452 TRF Tandem_Repeat 131051 131153 206 + . . scaffold452 GLEAN promoter 138887 139886 1 - . ID=CGI_10007657; scaffold452 WUBlastX LINE_L1-Tx1 142054 143394 441 + . . scaffold452 WUBlastX LINE_L1 143375 143533 20 + . . scaffold452 WUBlastX LINE_L1-Tx1 143429 143800 57 + . . scaffold452 TRF Tandem_Repeat 143948 144007 120 + . . scaffold452 GLEAN mRNA 147413 152130 1 - . ID=CGI_10007658; scaffold452 GLEAN promoter 152131 153130 1 - . ID=CGI_10007658; scaffold452 TRF Tandem_Repeat 162467 162509 59 + . . scaffold452 TRF Tandem_Repeat 162671 162720 55 + . . scaffold452 TRF Tandem_Repeat 163106 163165 113 + . . scaffold452 GLEAN mRNA 168725 173603 0.717692 - . ID=CGI_10007659; scaffold452 TRF Tandem_Repeat 171150 171247 54 + . . scaffold452 TRF Tandem_Repeat 172787 172844 72 + . . scaffold452 TRF Tandem_Repeat 172788 172844 82 + . . scaffold452 GLEAN promoter 173604 174603 0.717692 - . ID=CGI_10007659; scaffold452 TRF Tandem_Repeat 180055 181124 1361 + . . scaffold452 TRF Tandem_Repeat 180530 180648 59 + . . scaffold453 TRF Tandem_Repeat 4713 4765 61 + . . scaffold453 TRF Tandem_Repeat 4721 4763 59 + . . scaffold453 WUBlastX DNA_Kolobok 6841 6975 39 - . . scaffold453 WUBlastX DNA_Kolobok 6868 6975 40 - . . scaffold453 WUBlastX DNA_Kolobok 7026 7325 26 - . . scaffold453 WUBlastX DNA_Kolobok 7640 7798 24 - . . scaffold453 WUBlastX DNA_Kolobok 7789 8247 47 - . . scaffold453 WUBlastX DNA_Kolobok 7822 8061 62 - . . scaffold453 TRF Tandem_Repeat 8678 8759 128 + . . scaffold453 TRF Tandem_Repeat 10031 10099 138 + . . scaffold453 WUBlastX LINE_RTE-BovB 10306 10470 130 - . . scaffold453 TRF Tandem_Repeat 10858 10909 68 + . . scaffold453 GLEAN promoter 10911 11910 0.315868 + . ID=CGI_10015038; scaffold453 GLEAN mRNA 11911 18715 0.315868 + . ID=CGI_10015038; scaffold453 TRF Tandem_Repeat 17922 17983 60 + . . scaffold453 TRF Tandem_Repeat 17923 17993 73 + . . scaffold453 TRF Tandem_Repeat 17923 17987 80 + . . scaffold453 TRF Tandem_Repeat 22758 22797 55 + . . scaffold453 TRF Tandem_Repeat 30273 30324 59 + . . scaffold453 TRF Tandem_Repeat 31291 31333 50 + . . scaffold453 TRF Tandem_Repeat 31506 32358 772 + . . scaffold453 TRF Tandem_Repeat 58740 58824 170 + . . scaffold453 TRF Tandem_Repeat 59052 59106 110 + . . scaffold453 WUBlastX LTR_Ngaro 64822 65187 129 - . . scaffold453 TRF Tandem_Repeat 75326 75369 88 + . . scaffold453 TRF Tandem_Repeat 79532 79665 110 + . . scaffold453 TRF Tandem_Repeat 89481 89522 75 + . . scaffold453 TRF Tandem_Repeat 108474 109554 1389 + . . scaffold453 TRF Tandem_Repeat 110958 111007 84 + . . scaffold453 TRF Tandem_Repeat 110961 111006 58 + . . scaffold453 TRF Tandem_Repeat 111910 111944 61 + . . scaffold453 TRF Tandem_Repeat 116105 116138 50 + . . scaffold453 GLEAN promoter 118790 119789 0.044823 + . ID=CGI_10015039; scaffold453 GLEAN mRNA 119790 126521 0.044823 + . ID=CGI_10015039; scaffold453 GLEAN mRNA 131137 133478 0.998037 - . ID=CGI_10015040; scaffold453 GLEAN promoter 133479 134478 0.998037 - . ID=CGI_10015040; scaffold453 TRF Tandem_Repeat 135263 135318 51 + . . scaffold453 GLEAN promoter 137101 138100 0.160604 + . ID=CGI_10015041; scaffold453 GLEAN mRNA 138101 157244 0.160604 + . ID=CGI_10015041; scaffold453 WUBlastX LTR_Gypsy 142426 142716 94 + . . scaffold453 WUBlastX LTR_Gypsy 142758 142886 25 + . . scaffold453 WUBlastX LTR_Gypsy 142785 142883 34 + . . scaffold453 WUBlastX LTR_Gypsy 142800 142886 41 + . . scaffold453 TRF Tandem_Repeat 145520 145572 106 + . . scaffold453 TRF Tandem_Repeat 151158 151189 64 + . . scaffold453 TRF Tandem_Repeat 152616 152680 103 + . . scaffold453 TRF Tandem_Repeat 155645 155689 90 + . . scaffold453 TRF Tandem_Repeat 164425 164580 67 + . . scaffold453 TRF Tandem_Repeat 167188 167239 79 + . . scaffold453 TRF Tandem_Repeat 170380 170417 76 + . . scaffold453 WUBlastX LINE_RTE-X 176684 177205 70 + . . scaffold453 WUBlastX LINE_RTE-X 176702 177334 47 + . . scaffold453 WUBlastX LINE_RTE-X 178344 178484 54 + . . scaffold453 WUBlastX LTR_Pao 180369 180812 154 - . . scaffold453 WUBlastX LTR_Pao 180471 180935 66 - . . scaffold453 GLEAN promoter 187916 188915 0.979657 + . ID=CGI_10015042; scaffold453 GLEAN mRNA 188916 189341 0.979657 + . ID=CGI_10015042; scaffold453 WUBlastX LINE_RTE-X 190865 191272 47 - . . scaffold453 TRF Tandem_Repeat 195822 195851 60 + . . scaffold453 TRF Tandem_Repeat 195893 195919 54 + . . scaffold453 TRF Tandem_Repeat 196860 196910 102 + . . scaffold453 TRF Tandem_Repeat 197256 197341 172 + . . scaffold453 TRF Tandem_Repeat 197934 197971 76 + . . scaffold453 WUBlastX LINE_RTE-X 201128 201187 32 + . . scaffold453 WUBlastX LINE_RTE-X 201665 201940 53 + . . scaffold453 WUBlastX LTR_Pao 203225 203746 103 - . . scaffold453 WUBlastX LTR_Pao 203336 203746 174 - . . scaffold453 WUBlastX LTR_Pao 203411 203809 109 - . . scaffold453 WUBlastX LTR_Pao 203988 204026 26 - . . scaffold453 WUBlastX LTR_Pao 204479 204673 30 - . . scaffold453 WUBlastX LTR_Pao 204518 204745 32 - . . scaffold453 WUBlastX LTR_Pao 204581 204769 36 - . . scaffold453 WUBlastX LTR_Pao 204611 204745 37 - . . scaffold453 WUBlastX LTR_Pao 204644 204808 49 - . . scaffold453 GLEAN promoter 209164 210163 1 + . ID=CGI_10015043; scaffold453 TRF Tandem_Repeat 209970 210010 82 + . . scaffold453 GLEAN mRNA 210164 210595 1 + . ID=CGI_10015043; scaffold453 WUBlastX LINE_RTE-X 212309 212785 117 - . . scaffold453 WUBlastX LINE_RTE-X 212793 212915 69 - . . scaffold453 WUBlastX LINE_RTE-X 212856 212945 45 - . . scaffold453 WUBlastX LINE_RTE-X 213255 213359 23 - . . scaffold453 WUBlastX LINE_RTE-X 215247 215468 107 + . . scaffold453 WUBlastX LINE_RTE-X 215534 215887 34 + . . scaffold453 WUBlastX LINE_RTE-X 215783 215980 50 + . . scaffold453 WUBlastX RC_Helitron 222503 222745 47 - . . scaffold453 WUBlastX RC_Helitron 222762 223166 150 - . . scaffold453 WUBlastX RC_Helitron 222774 223109 181 - . . scaffold453 TRF Tandem_Repeat 223208 223931 734 + . . scaffold453 TRF Tandem_Repeat 225268 225580 317 + . . scaffold453 GLEAN promoter 228884 229883 0.617987 + . ID=CGI_10015044; scaffold453 GLEAN mRNA 229884 233003 0.617987 + . ID=CGI_10015044; scaffold453 GLEAN mRNA 233586 240199 1 - . ID=CGI_10015045; scaffold453 GLEAN promoter 234387 235386 0.482292 + . ID=CGI_10015046; scaffold453 GLEAN mRNA 235387 246866 0.482292 + . ID=CGI_10015046; scaffold453 GLEAN promoter 240200 241199 1 - . ID=CGI_10015045; scaffold453 TRF Tandem_Repeat 251588 251613 52 + . . scaffold453 GLEAN mRNA 260466 261530 0.99953 - . ID=CGI_10015047; scaffold453 GLEAN promoter 261531 262530 0.99953 - . ID=CGI_10015047; scaffold453 TRF Tandem_Repeat 265580 265812 299 + . . scaffold453 TRF Tandem_Repeat 266673 266913 328 + . . scaffold453 TRF Tandem_Repeat 267081 267182 98 + . . scaffold453 TRF Tandem_Repeat 267091 267275 162 + . . scaffold453 TRF Tandem_Repeat 267178 267281 128 + . . scaffold453 TRF Tandem_Repeat 268490 268546 105 + . . scaffold453 TRF Tandem_Repeat 269513 269678 176 + . . scaffold453 TRF Tandem_Repeat 269525 269754 194 + . . scaffold453 TRF Tandem_Repeat 273550 273590 73 + . . scaffold453 TRF Tandem_Repeat 281761 282670 1266 + . . scaffold453 TRF Tandem_Repeat 282675 283466 865 + . . scaffold453 WUBlastX LINE_CR1-L2 283891 283962 51 + . . scaffold453 WUBlastX LINE_CR1-L2 283894 283983 51 + . . scaffold453 TRF Tandem_Repeat 299132 299168 56 + . . scaffold453 GLEAN promoter 300139 301138 0.0783565 + . ID=CGI_10015048; scaffold453 GLEAN mRNA 301139 318550 0.0783565 + . ID=CGI_10015048; scaffold453 WUBlastX DNA_Kolobok 301458 301637 35 + . . scaffold453 WUBlastX DNA_Kolobok 302351 302491 44 + . . scaffold453 WUBlastX DNA_Kolobok 302372 302482 59 + . . scaffold453 WUBlastX DNA_Kolobok 302798 302929 79 - . . scaffold453 WUBlastX DNA_Kolobok 302801 303007 30 - . . scaffold453 WUBlastX DNA_Kolobok 303045 303176 78 - . . scaffold453 WUBlastX LTR_Gypsy 304146 304346 190 + . . scaffold453 WUBlastX LTR_Gypsy 304342 304941 286 + . . scaffold453 WUBlastX LTR_Gypsy 304792 304971 39 + . . scaffold453 WUBlastX LTR_Gypsy 305022 305639 87 + . . scaffold453 WUBlastX LTR_Gypsy 305139 306395 1134 + . . scaffold453 WUBlastX LTR_Gypsy 305886 306542 171 + . . scaffold453 WUBlastX LTR_Gypsy 306518 306619 21 + . . scaffold453 WUBlastX LTR_Gypsy 306704 306784 21 + . . scaffold453 WUBlastX DNA_Harbinger 310250 310681 180 - . . scaffold453 WUBlastX DNA_Harbinger 310814 310972 94 - . . scaffold453 WUBlastX DNA_Harbinger 310838 310996 49 - . . scaffold453 TRF Tandem_Repeat 311298 311347 100 + . . scaffold453 WUBlastX LINE_CR1-L2 314406 314495 25 - . . scaffold453 WUBlastX LINE_L2 314406 314564 24 - . . scaffold453 WUBlastX LINE_L2 314666 315157 55 - . . scaffold453 WUBlastX LINE_CR1-L2 314738 315115 70 - . . scaffold453 WUBlastX LINE_CR1-L2 315121 315180 51 - . . scaffold453 WUBlastX LINE_CR1-L2 315130 315255 45 - . . scaffold453 WUBlastX LTR_Ngaro 330242 330634 20 - . . scaffold453 WUBlastX LTR_Ngaro 330365 330583 128 - . . scaffold453 WUBlastX LTR_Ngaro 330365 330631 90 - . . scaffold453 WUBlastX LTR_Ngaro 330600 330788 60 - . . scaffold453 WUBlastX LTR_Ngaro 330759 330893 33 - . . scaffold453 WUBlastX LTR_Ngaro 330974 331252 134 - . . scaffold453 WUBlastX LTR_Ngaro 330980 331381 115 - . . scaffold453 WUBlastX LTR_Ngaro 331267 331413 52 - . . scaffold453 GLEAN mRNA 332965 335081 0.583274 - . ID=CGI_10015049; scaffold453 GLEAN promoter 335082 336081 0.583274 - . ID=CGI_10015049; scaffold453 WUBlastX LTR_Ngaro 338819 338941 28 - . . scaffold453 WUBlastX LTR_Ngaro 339049 339327 46 - . . scaffold453 WUBlastX LTR_Ngaro 339127 339396 123 - . . scaffold453 WUBlastX LTR_Ngaro 340016 340300 49 - . . scaffold453 WUBlastX LTR_Ngaro 340133 340342 59 - . . scaffold453 WUBlastX LTR_Ngaro 340172 340420 33 - . . scaffold453 GLEAN promoter 345906 346905 0.116749 + . ID=CGI_10015050; scaffold453 TRF Tandem_Repeat 346107 346557 623 + . . scaffold453 GLEAN mRNA 346906 361240 0.116749 + . ID=CGI_10015050; scaffold453 WUBlastX DNA_PiggyBac 357528 357620 37 + . . scaffold453 WUBlastX DNA_PiggyBac 358086 358226 31 + . . scaffold453 WUBlastX DNA_PiggyBac 358128 358226 35 + . . scaffold453 WUBlastX DNA_hAT-Ac 371758 371952 20 + . . scaffold453 WUBlastX DNA_hAT-Ac 371800 371958 26 + . . scaffold453 WUBlastX DNA_hAT-Ac 372071 372256 69 + . . scaffold453 TRF Tandem_Repeat 381686 383545 3140 + . . scaffold453 TRF Tandem_Repeat 383955 384641 1053 + . . scaffold453 TRF Tandem_Repeat 395029 395085 114 + . . scaffold453 GLEAN mRNA 414559 418893 1 - . ID=CGI_10015051; scaffold453 TRF Tandem_Repeat 417577 417997 788 + . . scaffold453 GLEAN promoter 418894 418895 1 - . ID=CGI_10015051; scaffold454 TRF Tandem_Repeat 2934 2999 105 + . . scaffold454 TRF Tandem_Repeat 6065 6114 100 + . . scaffold454 GLEAN promoter 8581 9580 0.963107 + . ID=CGI_10011622; scaffold454 GLEAN mRNA 9581 15567 0.963107 + . ID=CGI_10011622; scaffold454 TRF Tandem_Repeat 15755 15796 57 + . . scaffold454 WUBlastX LINE_L1-Tx1 20728 21054 89 - . . scaffold454 WUBlastX LINE_L1 21065 21214 49 - . . scaffold454 TRF Tandem_Repeat 21338 21387 86 + . . scaffold454 GLEAN promoter 22171 23170 0.559002 + . ID=CGI_10011623; scaffold454 GLEAN mRNA 23171 31361 0.559002 + . ID=CGI_10011623; scaffold454 WUBlastX LINE_RTE-X 34796 35116 25 - . . scaffold454 WUBlastX LINE_RTE-X 35391 35489 44 - . . scaffold454 WUBlastX LINE_RTE-X 35479 35814 66 - . . scaffold454 WUBlastX LINE_RTE-X 35530 35814 87 - . . scaffold454 TRF Tandem_Repeat 38908 41264 2062 + . . scaffold454 GLEAN promoter 42147 43146 0.999675 + . ID=CGI_10011624; scaffold454 TRF Tandem_Repeat 42731 42776 56 + . . scaffold454 GLEAN mRNA 43147 46590 0.999675 + . ID=CGI_10011624; scaffold454 GLEAN promoter 58540 59539 0.998816 + . ID=CGI_10011625; scaffold454 GLEAN mRNA 59540 60661 0.998816 + . ID=CGI_10011625; scaffold454 GLEAN mRNA 61265 74203 0.728209 - . ID=CGI_10011626; scaffold454 GLEAN promoter 74204 75203 0.728209 - . ID=CGI_10011626; scaffold454 GLEAN promoter 74334 75333 0.999998 + . ID=CGI_10011627; scaffold454 TRF Tandem_Repeat 74391 74633 106 + . . scaffold454 GLEAN mRNA 75334 76455 0.999998 + . ID=CGI_10011627; scaffold454 WUBlastX LINE_Penelope 77248 77523 45 - . . scaffold454 TRF Tandem_Repeat 79279 79391 115 + . . scaffold454 WUBlastX LINE_L1 80679 80969 40 + . . scaffold454 WUBlastX LINE_Penelope 81631 82197 50 - . . scaffold454 WUBlastX LINE_Penelope 81838 82176 55 - . . scaffold454 GLEAN mRNA 88448 92862 0.530114 - . ID=CGI_10011628; scaffold454 GLEAN promoter 92863 93862 0.530114 - . ID=CGI_10011628; scaffold454 GLEAN mRNA 93341 108889 0.996665 - . ID=CGI_10011629; scaffold454 WUBlastX LINE_L2 97785 98726 230 - . . scaffold454 WUBlastX LINE_L2 98073 98726 501 - . . scaffold454 WUBlastX LINE_L2 98723 99685 515 - . . scaffold454 WUBlastX LINE_CR1-L2 99589 100722 162 - . . scaffold454 WUBlastX LINE_L2 99589 100530 301 - . . scaffold454 TRF Tandem_Repeat 101401 101607 110 + . . scaffold454 TRF Tandem_Repeat 101425 101597 123 + . . scaffold454 TRF Tandem_Repeat 101619 101793 79 + . . scaffold454 GLEAN promoter 108890 109889 0.996665 - . ID=CGI_10011629; scaffold454 GLEAN mRNA 109031 162456 0.438612 - . ID=CGI_10011630; scaffold454 TRF Tandem_Repeat 112193 112245 106 + . . scaffold454 TRF Tandem_Repeat 126760 126797 60 + . . scaffold454 TRF Tandem_Repeat 127843 128202 486 + . . scaffold454 TRF Tandem_Repeat 127843 128202 486 + . . scaffold454 TRF Tandem_Repeat 144919 145036 96 + . . scaffold454 TRF Tandem_Repeat 150238 150262 50 + . . scaffold454 GLEAN promoter 162457 163456 0.438612 - . ID=CGI_10011630; scaffold454 GLEAN promoter 176622 177621 0.836229 + . ID=CGI_10011631; scaffold454 GLEAN mRNA 177622 178578 0.836229 + . ID=CGI_10011631; scaffold454 GLEAN mRNA 180500 186451 0.996819 - . ID=CGI_10011632; scaffold454 TRF Tandem_Repeat 180731 180787 82 + . . scaffold454 TRF Tandem_Repeat 180733 180787 57 + . . scaffold454 GLEAN promoter 186452 187451 0.996819 - . ID=CGI_10011632; scaffold454 TRF Tandem_Repeat 186873 187321 407 + . . scaffold454 TRF Tandem_Repeat 194997 195038 50 + . . scaffold454 TRF Tandem_Repeat 196472 197554 1390 + . . scaffold454 GLEAN promoter 207916 208915 0.999992 + . ID=CGI_10011633; scaffold454 GLEAN mRNA 208916 215227 0.999992 + . ID=CGI_10011633; scaffold454 TRF Tandem_Repeat 212420 212466 94 + . . scaffold454 GLEAN promoter 214646 215645 0.986173 + . ID=CGI_10011634; scaffold454 TRF Tandem_Repeat 215404 215464 122 + . . scaffold454 GLEAN mRNA 215646 216329 0.986173 + . ID=CGI_10011634; scaffold454 GLEAN mRNA 217908 219679 0.98039 - . ID=CGI_10011635; scaffold454 GLEAN promoter 219680 220679 0.98039 - . ID=CGI_10011635; scaffold454 WUBlastX LTR_DIRS 241760 242707 558 + . . scaffold454 WUBlastX LTR_DIRS 242587 243471 391 + . . scaffold454 WUBlastX LTR_Gypsy 243994 244398 154 + . . scaffold454 WUBlastX LTR_Gypsy 244054 244506 137 + . . scaffold454 GLEAN promoter 244675 245674 0.520098 + . ID=CGI_10011636; scaffold454 GLEAN mRNA 245675 249133 0.520098 + . ID=CGI_10011636; scaffold454 GLEAN mRNA 249793 258050 1 - . ID=CGI_10011637; scaffold454 TRF Tandem_Repeat 254943 255650 1030 + . . scaffold454 GLEAN promoter 258051 259050 1 - . ID=CGI_10011637; scaffold454 TRF Tandem_Repeat 265730 265795 71 + . . scaffold454 TRF Tandem_Repeat 265730 265795 88 + . . scaffold454 TRF Tandem_Repeat 267469 267510 50 + . . scaffold454 GLEAN mRNA 268765 270687 0.835522 - . ID=CGI_10011638; scaffold454 GLEAN promoter 270184 271183 0.593383 + . ID=CGI_10011639; scaffold454 GLEAN promoter 270688 271687 0.835522 - . ID=CGI_10011638; scaffold454 GLEAN mRNA 271184 272363 0.593383 + . ID=CGI_10011639; scaffold454 GLEAN mRNA 275736 293393 0.994144 - . ID=CGI_10011640; scaffold454 GLEAN promoter 281814 282813 0.999998 + . ID=CGI_10011641; scaffold454 GLEAN mRNA 282814 296036 0.999998 + . ID=CGI_10011641; scaffold454 GLEAN promoter 293394 294393 0.994144 - . ID=CGI_10011640; scaffold456 TRF Tandem_Repeat 13887 14007 100 + . . scaffold456 GLEAN mRNA 15627 19758 1 - . ID=CGI_10006857; scaffold456 GLEAN promoter 19759 20758 1 - . ID=CGI_10006857; scaffold456 WUBlastX LTR_Gypsy-Cigr 21889 22434 178 + . . scaffold456 WUBlastX LTR_Gypsy 22360 24516 579 + . . scaffold456 WUBlastX LTR_Gypsy 23032 26331 1905 + . . scaffold456 WUBlastX LTR_Gypsy 25075 26559 480 + . . scaffold456 WUBlastX LTR_Copia 26533 26592 38 + . . scaffold456 WUBlastX LTR_Copia 26801 27004 31 + . . scaffold456 GLEAN promoter 28346 29345 0.729611 + . ID=CGI_10006858; scaffold456 GLEAN mRNA 29346 35645 0.729611 + . ID=CGI_10006858; scaffold456 GLEAN promoter 38102 39101 0.729315 + . ID=CGI_10006859; scaffold456 GLEAN mRNA 39102 47572 0.729315 + . ID=CGI_10006859; scaffold456 WUBlastX LTR_DIRS 49556 49738 78 - . . scaffold456 WUBlastX LTR_DIRS 49607 49738 82 - . . scaffold456 GLEAN mRNA 65456 71233 0.998379 - . ID=CGI_10006860; scaffold456 TRF Tandem_Repeat 68419 68461 86 + . . scaffold456 TRF Tandem_Repeat 68541 68576 72 + . . scaffold456 GLEAN promoter 71234 72233 0.998379 - . ID=CGI_10006860; scaffold456 GLEAN mRNA 77605 81453 0.999743 - . ID=CGI_10006861; scaffold456 GLEAN promoter 81454 82453 0.999743 - . ID=CGI_10006861; scaffold456 GLEAN mRNA 95374 95640 0.997564 - . ID=CGI_10006862; scaffold456 GLEAN promoter 95641 96640 0.997564 - . ID=CGI_10006862; scaffold456 WUBlastX LINE_L1 95800 96246 97 - . . scaffold456 WUBlastX LINE_L1-Tx1 95827 96438 32 - . . scaffold456 WUBlastX LINE_L1 97018 97563 100 - . . scaffold456 WUBlastX LINE_L1 97018 97737 34 - . . scaffold456 GLEAN promoter 101025 102024 0.577611 + . ID=CGI_10006863; scaffold456 GLEAN mRNA 102025 155096 0.577611 + . ID=CGI_10006863; scaffold456 TRF Tandem_Repeat 120079 120355 266 + . . scaffold456 TRF Tandem_Repeat 120079 120392 301 + . . scaffold456 TRF Tandem_Repeat 120087 120337 333 + . . scaffold456 TRF Tandem_Repeat 121932 122026 59 + . . scaffold456 TRF Tandem_Repeat 127715 127740 52 + . . scaffold456 WUBlastX LTR_Ngaro 137942 138583 187 + . . scaffold456 WUBlastX LTR_Ngaro 138959 139087 38 + . . scaffold456 WUBlastX LTR_Gypsy 140570 140617 24 + . . scaffold456 WUBlastX LTR_Gypsy 141402 141776 73 + . . scaffold456 WUBlastX LTR_Gypsy 141504 141767 105 + . . scaffold456 WUBlastX LTR_Gypsy 141567 141818 207 + . . scaffold456 WUBlastX LTR_Gypsy 141573 141899 174 + . . scaffold456 WUBlastX LTR_Gypsy 141585 141992 152 + . . scaffold456 WUBlastX LTR_Gypsy 141968 142741 220 + . . scaffold456 WUBlastX LTR_Gypsy 142031 142684 605 + . . scaffold456 TRF Tandem_Repeat 156926 157064 145 + . . scaffold456 GLEAN mRNA 158752 159078 0.996819 - . ID=CGI_10006864; scaffold456 GLEAN promoter 159079 160078 0.996819 - . ID=CGI_10006864; scaffold457 TRF Tandem_Repeat 13684 13754 90 + . . scaffold457 TRF Tandem_Repeat 16407 16440 68 + . . scaffold457 WUBlastX LTR_Pao 23815 24768 881 + . . scaffold457 WUBlastX LTR_Gypsy 27477 27557 29 - . . scaffold457 WUBlastX LTR_Gypsy 27848 27997 66 - . . scaffold457 WUBlastX LTR_Gypsy 27997 28140 34 - . . scaffold457 GLEAN promoter 29038 30037 0.598894 + . ID=CGI_10014526; scaffold457 GLEAN mRNA 30038 30244 0.598894 + . ID=CGI_10014526; scaffold457 GLEAN promoter 35149 36148 0.303508 + . ID=CGI_10014527; scaffold457 GLEAN mRNA 36149 55409 0.303508 + . ID=CGI_10014527; scaffold457 TRF Tandem_Repeat 41837 41878 84 + . . scaffold457 TRF Tandem_Repeat 50391 50430 80 + . . scaffold457 TRF Tandem_Repeat 51790 51833 79 + . . scaffold457 GLEAN promoter 76527 77526 0.981255 + . ID=CGI_10014528; scaffold457 GLEAN mRNA 77527 87964 0.981255 + . ID=CGI_10014528; scaffold457 TRF Tandem_Repeat 81557 81602 51 + . . scaffold457 TRF Tandem_Repeat 81562 81599 51 + . . scaffold457 TRF Tandem_Repeat 86951 87006 112 + . . scaffold457 WUBlastX LTR_Pao 89341 89583 40 - . . scaffold457 WUBlastX LTR_Pao 89410 89583 80 - . . scaffold457 WUBlastX LTR_Pao 89502 89990 160 - . . scaffold457 WUBlastX LTR_Pao 89583 90302 292 - . . scaffold457 WUBlastX LTR_Pao 90056 90817 98 - . . scaffold457 WUBlastX LTR_Pao 90062 90688 306 - . . scaffold457 WUBlastX LTR_Pao 90808 92154 771 - . . scaffold457 WUBlastX LTR_Pao 92142 92291 122 - . . scaffold457 WUBlastX LTR_Pao 92297 92629 99 - . . scaffold457 WUBlastX LTR_Pao 92570 92641 34 - . . scaffold457 WUBlastX LTR_Pao 92653 93237 247 - . . scaffold457 WUBlastX LTR_Pao 93637 93852 59 - . . scaffold457 WUBlastX LTR_Pao 93855 94085 79 - . . scaffold457 WUBlastX LTR_Pao 93867 94208 33 - . . scaffold457 WUBlastX LTR_Pao 93882 94421 21 - . . scaffold457 TRF Tandem_Repeat 97074 97122 73 + . . scaffold457 TRF Tandem_Repeat 104140 104864 850 + . . scaffold457 WUBlastX LINE_CR1-L2 108166 108855 55 + . . scaffold457 WUBlastX LINE_L2 108637 108894 22 + . . scaffold457 WUBlastX LINE_L1-Tx1 109153 111879 1739 + . . scaffold457 WUBlastX LINE_L1-Tx1 111860 112732 89 + . . scaffold457 GLEAN mRNA 113896 119453 0.650664 - . ID=CGI_10014529; scaffold457 TRF Tandem_Repeat 114832 115519 532 + . . scaffold457 TRF Tandem_Repeat 115087 115527 86 + . . scaffold457 TRF Tandem_Repeat 115092 115493 142 + . . scaffold457 TRF Tandem_Repeat 116502 116526 50 + . . scaffold457 GLEAN promoter 119454 120453 0.650664 - . ID=CGI_10014529; scaffold457 GLEAN promoter 139220 140219 0.99851 + . ID=CGI_10014530; scaffold457 GLEAN promoter 139940 140939 0.768843 + . ID=CGI_10014531; scaffold457 GLEAN mRNA 140220 140655 0.99851 + . ID=CGI_10014530; scaffold457 GLEAN mRNA 140940 149664 0.768843 + . ID=CGI_10014531; scaffold457 WUBlastX LINE_CR1-L2 155400 155852 20 - . . scaffold457 WUBlastX LINE_CR1 155754 155915 50 - . . scaffold457 WUBlastX LINE_CR1-L2 157249 157662 50 - . . scaffold457 WUBlastX LINE_CR1-L2 157249 157521 69 - . . scaffold457 TRF Tandem_Repeat 161619 161663 90 + . . scaffold457 TRF Tandem_Repeat 163735 163850 92 + . . scaffold457 WUBlastX LTR_Gypsy 169521 170657 511 - . . scaffold457 WUBlastX LTR_Gypsy 169692 170657 614 - . . scaffold457 TRF Tandem_Repeat 171747 173281 1780 + . . scaffold457 TRF Tandem_Repeat 171748 173227 1498 + . . scaffold457 GLEAN mRNA 177188 183802 0.78273 - . ID=CGI_10014532; scaffold457 TRF Tandem_Repeat 178375 178776 441 + . . scaffold457 TRF Tandem_Repeat 180415 180452 67 + . . scaffold457 TRF Tandem_Repeat 180415 180453 51 + . . scaffold457 GLEAN promoter 183803 184802 0.78273 - . ID=CGI_10014532; scaffold457 TRF Tandem_Repeat 192900 193267 297 + . . scaffold457 TRF Tandem_Repeat 192900 193266 289 + . . scaffold457 GLEAN mRNA 198505 201474 1 - . ID=CGI_10014533; scaffold457 GLEAN promoter 201475 202474 1 - . ID=CGI_10014533; scaffold457 TRF Tandem_Repeat 207918 208114 71 + . . scaffold457 TRF Tandem_Repeat 208016 208134 68 + . . scaffold457 TRF Tandem_Repeat 209123 209497 236 + . . scaffold457 TRF Tandem_Repeat 209191 209498 275 + . . scaffold457 GLEAN mRNA 213050 222173 0.400336 - . ID=CGI_10014534; scaffold457 WUBlastX DNA_TcMar-Marin 214510 214668 29 - . . scaffold457 WUBlastX DNA_TcMar-Marin 214750 214986 65 - . . scaffold457 WUBlastX LINE_L1-Tx1 216666 216851 52 + . . scaffold457 WUBlastX LINE_L1-Tx1 216851 217981 194 + . . scaffold457 TRF Tandem_Repeat 218687 218740 108 + . . scaffold457 GLEAN promoter 222174 223173 0.400336 - . ID=CGI_10014534; scaffold457 WUBlastX LINE_L2 223377 223742 42 + . . scaffold457 WUBlastX LINE_L2 223518 223772 46 + . . scaffold457 WUBlastX LINE_L2 223524 223733 82 + . . scaffold457 TRF Tandem_Repeat 223991 224023 66 + . . scaffold457 TRF Tandem_Repeat 225928 225960 66 + . . scaffold457 GLEAN mRNA 229299 229673 0.999983 - . ID=CGI_10014535; scaffold457 GLEAN promoter 229674 230673 0.999983 - . ID=CGI_10014535; scaffold457 WUBlastX LTR_Gypsy 229781 230020 51 - . . scaffold457 WUBlastX LTR_Copia 231077 231352 21 - . . scaffold457 WUBlastX LTR_Gypsy 231155 232279 547 - . . scaffold457 WUBlastX LTR_ERV1 232362 232442 23 - . . scaffold457 WUBlastX LTR_Gypsy 233084 233449 31 - . . scaffold457 WUBlastX LTR_Gypsy 233195 233491 218 - . . scaffold457 WUBlastX LTR_Gypsy 233482 234909 950 - . . scaffold457 WUBlastX LTR_Gypsy 233482 235242 906 - . . scaffold457 WUBlastX LTR_Gypsy 235221 235274 23 - . . scaffold457 GLEAN mRNA 237272 241485 0.980841 - . ID=CGI_10014536; scaffold457 TRF Tandem_Repeat 239159 239355 245 + . . scaffold457 TRF Tandem_Repeat 239160 239356 249 + . . scaffold457 GLEAN promoter 241486 242485 0.980841 - . ID=CGI_10014536; scaffold457 TRF Tandem_Repeat 251202 252181 672 + . . scaffold457 TRF Tandem_Repeat 251972 252180 319 + . . scaffold457 WUBlastX RC_Helitron 258570 259565 48 - . . scaffold457 WUBlastX LTR_Gypsy 258981 260000 85 - . . scaffold457 WUBlastX DNA_Maverick 259242 260066 133 - . . scaffold457 WUBlastX LTR_Gypsy 259461 260354 159 - . . scaffold457 WUBlastX LTR_Gypsy 259566 260540 135 - . . scaffold457 WUBlastX LTR_ERV1 259569 260270 169 - . . scaffold457 TRF Tandem_Repeat 264053 264081 58 + . . scaffold457 GLEAN promoter 266077 267076 0.989915 + . ID=CGI_10014537; scaffold457 GLEAN mRNA 267077 275444 0.989915 + . ID=CGI_10014537; scaffold457 TRF Tandem_Repeat 269930 269988 50 + . . scaffold457 TRF Tandem_Repeat 273554 273627 130 + . . scaffold457 GLEAN promoter 281995 282994 0.999998 + . ID=CGI_10014538; scaffold457 GLEAN mRNA 282995 289327 0.999998 + . ID=CGI_10014538; scaffold457 GLEAN mRNA 289711 298900 0.999645 - . ID=CGI_10014539; scaffold457 TRF Tandem_Repeat 289842 290403 979 + . . scaffold457 TRF Tandem_Repeat 297177 297206 60 + . . scaffold457 TRF Tandem_Repeat 297773 297812 80 + . . scaffold457 GLEAN promoter 298901 299900 0.999645 - . ID=CGI_10014539; scaffold457 GLEAN mRNA 299040 303323 0.999997 - . ID=CGI_10014540; scaffold457 GLEAN promoter 303324 304323 0.999997 - . ID=CGI_10014540; scaffold457 TRF Tandem_Repeat 311926 312724 1242 + . . scaffold457 TRF Tandem_Repeat 311926 312724 1224 + . . scaffold457 TRF Tandem_Repeat 311926 312724 1240 + . . scaffold457 GLEAN mRNA 328867 362435 0.990715 - . ID=CGI_10014541; scaffold457 TRF Tandem_Repeat 331080 331472 678 + . . scaffold457 TRF Tandem_Repeat 336123 336217 79 + . . scaffold457 TRF Tandem_Repeat 344833 345286 456 + . . scaffold457 TRF Tandem_Repeat 344833 345306 456 + . . scaffold457 TRF Tandem_Repeat 345514 345668 134 + . . scaffold457 TRF Tandem_Repeat 353073 353126 108 + . . scaffold457 TRF Tandem_Repeat 354494 354868 678 + . . scaffold457 TRF Tandem_Repeat 357779 357923 175 + . . scaffold457 GLEAN promoter 362436 363435 0.990715 - . ID=CGI_10014541; scaffold457 WUBlastX LINE_RTE 365217 366107 48 + . . scaffold457 GLEAN mRNA 365264 371451 0.499678 - . ID=CGI_10014542; scaffold457 WUBlastX LINE_RTE-BovB 365430 366185 404 + . . scaffold457 WUBlastX LINE_RTE-BovB 365718 366536 133 + . . scaffold457 WUBlastX LINE_RTE-BovB 366505 366903 144 + . . scaffold457 WUBlastX LINE_RTE-BovB 366622 366912 232 + . . scaffold457 WUBlastX LINE_RTE-BovB 366893 367021 82 + . . scaffold457 WUBlastX LINE_I 366914 367111 26 + . . scaffold457 TRF Tandem_Repeat 367192 367245 90 + . . scaffold457 GLEAN promoter 371452 372451 0.499678 - . ID=CGI_10014542; scaffold457 TRF Tandem_Repeat 371475 371518 52 + . . scaffold457 TRF Tandem_Repeat 375698 375743 74 + . . scaffold457 WUBlastX LTR_Ngaro 376877 377047 21 + . . scaffold457 WUBlastX LTR_Ngaro 377251 377487 70 + . . scaffold457 WUBlastX LTR_Ngaro 377290 377487 89 + . . scaffold457 WUBlastX LTR_Ngaro 395404 395724 76 - . . scaffold457 WUBlastX LTR_Ngaro 395793 396044 125 - . . scaffold457 WUBlastX LTR_Ngaro 395981 396508 317 - . . scaffold457 WUBlastX LTR_Ngaro 396444 396722 77 - . . scaffold457 WUBlastX LTR_Ngaro 396864 397406 113 - . . scaffold457 WUBlastX LTR_Ngaro 397008 397457 224 - . . scaffold457 WUBlastX LINE_L1-Tx1 397831 398250 126 + . . scaffold457 WUBlastX LINE_L1-Tx1 397900 398394 99 + . . scaffold457 TRF Tandem_Repeat 402246 402484 230 + . . scaffold458 GLEAN promoter 1 19 0.861189 + . ID=CGI_10013583; scaffold458 GLEAN mRNA 20 8574 0.861189 + . ID=CGI_10013583; scaffold458 TRF Tandem_Repeat 2571 2792 154 + . . scaffold458 TRF Tandem_Repeat 2572 2792 399 + . . scaffold458 TRF Tandem_Repeat 7454 7500 69 + . . scaffold458 GLEAN promoter 7948 8947 0.999478 + . ID=CGI_10013584; scaffold458 GLEAN mRNA 8948 19483 0.999478 + . ID=CGI_10013584; scaffold458 WUBlastX LINE_Penelope 21918 22208 36 + . . scaffold458 GLEAN promoter 22928 23927 0.956071 + . ID=CGI_10013585; scaffold458 GLEAN mRNA 23928 25479 0.956071 + . ID=CGI_10013585; scaffold458 GLEAN mRNA 52942 56704 0.498204 - . ID=CGI_10013586; scaffold458 GLEAN promoter 56705 57704 0.498204 - . ID=CGI_10013586; scaffold458 WUBlastX DNA_Sola 61828 62157 76 - . . scaffold458 WUBlastX DNA_Sola 61876 62235 67 - . . scaffold458 WUBlastX DNA_Sola 62285 62368 45 - . . scaffold458 WUBlastX DNA_Sola 62734 63315 276 - . . scaffold458 WUBlastX DNA_Sola 62740 63471 210 - . . scaffold458 WUBlastX DNA_Sola 63294 63632 132 - . . scaffold458 WUBlastX DNA_Sola 63602 64861 620 - . . scaffold458 TRF Tandem_Repeat 65795 66886 1452 + . . scaffold458 TRF Tandem_Repeat 73364 73408 90 + . . scaffold458 GLEAN promoter 77015 78014 0.239722 + . ID=CGI_10013587; scaffold458 GLEAN mRNA 78015 93788 0.239722 + . ID=CGI_10013587; scaffold458 GLEAN promoter 94670 95669 0.994515 + . ID=CGI_10013588; scaffold458 GLEAN mRNA 95670 105069 0.994515 + . ID=CGI_10013588; scaffold458 GLEAN promoter 104247 105246 0.999785 + . ID=CGI_10013589; scaffold458 GLEAN mRNA 105247 110866 0.999785 + . ID=CGI_10013589; scaffold458 TRF Tandem_Repeat 109061 109086 52 + . . scaffold458 TRF Tandem_Repeat 109116 109174 118 + . . scaffold458 WUBlastX LTR_Copia 109754 110149 26 + . . scaffold458 GLEAN promoter 111823 112822 0.0823294 + . ID=CGI_10013590; scaffold458 GLEAN mRNA 112823 122006 0.0823294 + . ID=CGI_10013590; scaffold458 WUBlastX LINE_RTE-X 147609 147818 70 - . . scaffold458 WUBlastX LINE_RTE-X 147627 147953 20 - . . scaffold458 WUBlastX LINE_RTE-X 147714 147839 35 - . . scaffold458 TRF Tandem_Repeat 149490 149735 275 + . . scaffold458 TRF Tandem_Repeat 167318 167356 69 + . . scaffold458 GLEAN promoter 170659 171658 0.10231 + . ID=CGI_10013591; scaffold458 GLEAN mRNA 171659 179488 0.10231 + . ID=CGI_10013591; scaffold458 WUBlastX LTR_Ngaro 171737 172504 107 + . . scaffold458 WUBlastX LTR_Ngaro 171860 172369 155 + . . scaffold458 WUBlastX LTR_Ngaro 171914 172342 191 + . . scaffold458 WUBlastX LTR_Ngaro 172638 172910 63 + . . scaffold458 WUBlastX LTR_Ngaro 172728 172922 83 + . . scaffold458 WUBlastX LTR_Ngaro 172907 174247 851 + . . scaffold458 WUBlastX LTR_Ngaro 174196 175155 431 + . . scaffold458 WUBlastX LTR_Ngaro 175954 176097 92 + . . scaffold458 WUBlastX LTR_Ngaro 175957 176124 57 + . . scaffold458 WUBlastX LTR_Ngaro 175999 176259 35 + . . scaffold458 WUBlastX LTR_Ngaro 176393 176665 63 + . . scaffold458 WUBlastX LTR_Ngaro 176483 176677 83 + . . scaffold458 WUBlastX LTR_Ngaro 176662 178002 851 + . . scaffold458 WUBlastX LTR_Ngaro 177951 178910 431 + . . scaffold458 TRF Tandem_Repeat 199376 199483 153 + . . scaffold458 TRF Tandem_Repeat 202605 202741 148 + . . scaffold458 GLEAN mRNA 203057 212099 0.999672 - . ID=CGI_10013592; scaffold458 TRF Tandem_Repeat 203897 203923 54 + . . scaffold458 TRF Tandem_Repeat 209714 209740 54 + . . scaffold458 GLEAN promoter 212100 213099 0.999672 - . ID=CGI_10013592; scaffold458 GLEAN mRNA 220920 225308 1 - . ID=CGI_10013593; scaffold458 GLEAN promoter 225309 226308 1 - . ID=CGI_10013593; scaffold458 TRF Tandem_Repeat 229511 229536 52 + . . scaffold458 GLEAN mRNA 231364 251292 1 - . ID=CGI_10013594; scaffold458 GLEAN promoter 240665 241664 0.61071 + . ID=CGI_10013595; scaffold458 GLEAN mRNA 241665 265810 0.61071 + . ID=CGI_10013595; scaffold458 TRF Tandem_Repeat 248723 248829 189 + . . scaffold458 GLEAN promoter 251293 252292 1 - . ID=CGI_10013594; scaffold458 GLEAN mRNA 254990 271355 0.96493 - . ID=CGI_10013596; scaffold458 TRF Tandem_Repeat 271153 271197 90 + . . scaffold458 GLEAN promoter 271356 272355 0.96493 - . ID=CGI_10013596; scaffold458 GLEAN mRNA 272913 281551 0.98785 - . ID=CGI_10013597; scaffold458 GLEAN promoter 281552 282551 0.98785 - . ID=CGI_10013597; scaffold458 TRF Tandem_Repeat 287376 287427 77 + . . scaffold458 TRF Tandem_Repeat 305245 305276 64 + . . scaffold458 TRF Tandem_Repeat 319146 319195 75 + . . scaffold458 TRF Tandem_Repeat 319149 319194 67 + . . scaffold458 TRF Tandem_Repeat 330108 330280 229 + . . scaffold458 TRF Tandem_Repeat 330113 330311 166 + . . scaffold458 TRF Tandem_Repeat 333105 333246 92 + . . scaffold458 TRF Tandem_Repeat 338573 338614 75 + . . scaffold458 GLEAN mRNA 343528 348039 0.999998 - . ID=CGI_10013598; scaffold458 GLEAN promoter 348040 349039 0.999998 - . ID=CGI_10013598; scaffold458 TRF Tandem_Repeat 351059 351125 53 + . . scaffold458 TRF Tandem_Repeat 351059 351125 50 + . . scaffold458 TRF Tandem_Repeat 354472 354526 101 + . . scaffold459 WUBlastX LTR_Pao 37 1437 559 - . . scaffold459 WUBlastX LTR_Pao 37 1899 541 - . . scaffold459 TRF Tandem_Repeat 10762 10813 86 + . . scaffold459 GLEAN mRNA 14932 19748 0.927404 - . ID=CGI_10018163; scaffold459 TRF Tandem_Repeat 15271 15315 90 + . . scaffold459 GLEAN promoter 18774 19773 0.650564 + . ID=CGI_10018164; scaffold459 GLEAN promoter 19749 20748 0.927404 - . ID=CGI_10018163; scaffold459 GLEAN mRNA 19774 37824 0.650564 + . ID=CGI_10018164; scaffold459 GLEAN mRNA 19846 31339 0.918956 - . ID=CGI_10018165; scaffold459 WUBlastX LINE_RTE-X 22894 23619 209 + . . scaffold459 GLEAN promoter 31340 32339 0.918956 - . ID=CGI_10018165; scaffold459 TRF Tandem_Repeat 33721 33746 52 + . . scaffold459 GLEAN mRNA 42211 48827 1 - . ID=CGI_10018166; scaffold459 TRF Tandem_Repeat 45250 45289 62 + . . scaffold459 GLEAN promoter 47177 48176 0.45554 + . ID=CGI_10018167; scaffold459 GLEAN mRNA 48177 82844 0.45554 + . ID=CGI_10018167; scaffold459 GLEAN promoter 48828 49827 1 - . ID=CGI_10018166; scaffold459 TRF Tandem_Repeat 50311 50402 103 + . . scaffold459 WUBlastX DNA_Merlin 51150 51503 98 - . . scaffold459 WUBlastX DNA_Merlin 51159 51431 128 - . . scaffold459 WUBlastX DNA_Merlin 52351 52653 189 - . . scaffold459 WUBlastX DNA_Merlin 52354 52896 117 - . . scaffold459 TRF Tandem_Repeat 68296 68324 58 + . . scaffold459 TRF Tandem_Repeat 82188 82471 509 + . . scaffold459 GLEAN promoter 84223 85222 0.593391 + . ID=CGI_10018168; scaffold459 GLEAN mRNA 85223 87181 0.593391 + . ID=CGI_10018168; scaffold459 GLEAN promoter 87021 88020 0.843454 + . ID=CGI_10018169; scaffold459 GLEAN mRNA 88021 99888 0.843454 + . ID=CGI_10018169; scaffold459 WUBlastX LINE_RTE-X 92244 92348 24 + . . scaffold459 WUBlastX LINE_RTE-X 92274 92876 164 + . . scaffold459 WUBlastX LINE_RTE-X 92836 93024 27 + . . scaffold459 WUBlastX LINE_RTE-X 92878 92985 38 + . . scaffold459 TRF Tandem_Repeat 95933 96052 96 + . . scaffold459 TRF Tandem_Repeat 98986 99099 86 + . . scaffold459 GLEAN mRNA 130507 139915 0.650578 - . ID=CGI_10018170; scaffold459 WUBlastX DNA_TcMar-Marin 131821 132090 74 - . . scaffold459 WUBlastX DNA_TcMar-Marin 131821 132150 52 - . . scaffold459 WUBlastX DNA_TcMar-Marin 131821 132531 29 - . . scaffold459 WUBlastX DNA_TcMar-Marin 132198 132302 35 - . . scaffold459 WUBlastX DNA_TcMar-Marin 132424 132555 29 - . . scaffold459 WUBlastX DNA_TcMar-Marin 132427 132531 36 - . . scaffold459 WUBlastX DNA_TcMar-Marin 137384 137455 31 - . . scaffold459 WUBlastX DNA_TcMar-Marin 137484 137654 33 - . . scaffold459 WUBlastX DNA_TcMar-Marin 137523 137852 60 - . . scaffold459 WUBlastX DNA_TcMar-Marin 137523 137792 84 - . . scaffold459 WUBlastX DNA_TcMar-Marin 137912 138256 40 - . . scaffold459 GLEAN promoter 139916 140915 0.650578 - . ID=CGI_10018170; scaffold459 GLEAN mRNA 142513 160346 0.813912 - . ID=CGI_10018171; scaffold459 TRF Tandem_Repeat 147668 147721 108 + . . scaffold459 WUBlastX DNA_TcMar-Marin 157606 157785 47 - . . scaffold459 TRF Tandem_Repeat 158582 158630 98 + . . scaffold459 TRF Tandem_Repeat 159507 159531 50 + . . scaffold459 GLEAN promoter 160347 161346 0.813912 - . ID=CGI_10018171; scaffold459 TRF Tandem_Repeat 161609 161661 97 + . . scaffold459 TRF Tandem_Repeat 167823 167866 70 + . . scaffold459 GLEAN promoter 169216 170215 0.837416 + . ID=CGI_10018172; scaffold459 GLEAN mRNA 170216 217909 0.837416 + . ID=CGI_10018172; scaffold459 TRF Tandem_Repeat 177857 178100 130 + . . scaffold459 TRF Tandem_Repeat 177901 178173 199 + . . scaffold459 TRF Tandem_Repeat 177905 178147 391 + . . scaffold459 TRF Tandem_Repeat 178332 178468 60 + . . scaffold459 TRF Tandem_Repeat 178333 178463 84 + . . scaffold459 TRF Tandem_Repeat 178376 178481 77 + . . scaffold459 TRF Tandem_Repeat 181299 181346 96 + . . scaffold459 TRF Tandem_Repeat 217527 217570 79 + . . scaffold459 TRF Tandem_Repeat 225613 225643 62 + . . scaffold459 GLEAN mRNA 238417 242043 0.235296 - . ID=CGI_10018173; scaffold459 TRF Tandem_Repeat 241615 241704 56 + . . scaffold459 GLEAN promoter 242044 243043 0.235296 - . ID=CGI_10018173; scaffold459 TRF Tandem_Repeat 242465 242576 116 + . . scaffold459 TRF Tandem_Repeat 245666 246088 287 + . . scaffold459 TRF Tandem_Repeat 245684 246346 370 + . . scaffold459 TRF Tandem_Repeat 245687 246342 442 + . . scaffold459 TRF Tandem_Repeat 245687 246346 336 + . . scaffold459 TRF Tandem_Repeat 246239 246341 55 + . . scaffold459 TRF Tandem_Repeat 249862 249936 141 + . . scaffold459 TRF Tandem_Repeat 249871 249940 85 + . . scaffold459 GLEAN mRNA 250130 254376 0.998991 - . ID=CGI_10018174; scaffold459 TRF Tandem_Repeat 251152 251198 76 + . . scaffold459 GLEAN promoter 254377 255376 0.998991 - . ID=CGI_10018174; scaffold459 TRF Tandem_Repeat 261866 261914 98 + . . scaffold459 TRF Tandem_Repeat 266868 266900 66 + . . scaffold459 TRF Tandem_Repeat 267577 267624 87 + . . scaffold459 TRF Tandem_Repeat 277900 277940 82 + . . scaffold459 GLEAN mRNA 281860 284385 0.592861 - . ID=CGI_10018175; scaffold459 GLEAN promoter 284386 285385 0.592861 - . ID=CGI_10018175; scaffold459 TRF Tandem_Repeat 284471 284597 78 + . . scaffold459 GLEAN mRNA 284789 293885 0.9159 - . ID=CGI_10018176; scaffold459 TRF Tandem_Repeat 290693 290763 117 + . . scaffold459 GLEAN promoter 293886 294885 0.9159 - . ID=CGI_10018176; scaffold459 GLEAN mRNA 315624 317727 0.999676 - . ID=CGI_10018177; scaffold459 GLEAN promoter 317728 318727 0.999676 - . ID=CGI_10018177; scaffold459 GLEAN promoter 328332 329331 0.998982 + . ID=CGI_10018180; scaffold459 GLEAN mRNA 328833 329323 0.999991 - . ID=CGI_10018179; scaffold459 GLEAN promoter 329324 330323 0.999991 - . ID=CGI_10018179; scaffold459 GLEAN mRNA 329332 330852 0.998982 + . ID=CGI_10018180; scaffold459 GLEAN promoter 330093 331092 0.558395 + . ID=CGI_10018181; scaffold459 GLEAN mRNA 331093 332541 0.558395 + . ID=CGI_10018181; scaffold459 GLEAN promoter 335071 336070 1 + . ID=CGI_10018182; scaffold459 GLEAN mRNA 336071 337871 1 + . ID=CGI_10018182; scaffold459 WUBlastX LINE_CR1-L2 359125 359388 95 + . . scaffold459 WUBlastX LINE_CR1-L2 359134 359451 35 + . . scaffold459 GLEAN mRNA 364047 364622 0.990874 - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364617 364922 52 - . . scaffold459 GLEAN promoter 364623 365622 0.990874 - . ID=CGI_10018183; scaffold459 WUBlastX LTR_Gypsy 364665 364958 69 - . . scaffold459 WUBlastX LTR_Gypsy 364707 364934 77 - . . scaffold459 WUBlastX LTR_Gypsy 364942 365037 47 - . . scaffold459 WUBlastX LTR_Gypsy 364945 365706 35 - . . scaffold459 WUBlastX LTR_Gypsy 365200 365946 105 - . . scaffold459 WUBlastX LTR_Gypsy-Cigr 365428 365967 158 - . . scaffold459 TRF Tandem_Repeat 387523 387553 62 + . . scaffold459 GLEAN mRNA 388836 389930 1 - . ID=CGI_10018184; scaffold459 GLEAN promoter 389931 390930 1 - . ID=CGI_10018184; scaffold459 TRF Tandem_Repeat 390223 390272 77 + . . scaffold459 TRF Tandem_Repeat 391789 391868 151 + . . scaffold459 TRF Tandem_Repeat 404481 404526 92 + . . scaffold459 WUBlastX DNA_Harbinger 405848 406597 97 - . . scaffold459 TRF Tandem_Repeat 424347 425539 997 + . . scaffold459 TRF Tandem_Repeat 435753 435810 116 + . . scaffold459 TRF Tandem_Repeat 438703 439691 1222 + . . scaffold459 TRF Tandem_Repeat 441952 442184 183 + . . scaffold459 TRF Tandem_Repeat 441978 442100 51 + . . scaffold459 TRF Tandem_Repeat 442020 442142 63 + . . scaffold459 TRF Tandem_Repeat 442115 442184 54 + . . scaffold459 TRF Tandem_Repeat 446538 446766 205 + . . scaffold459 TRF Tandem_Repeat 446538 446650 72 + . . scaffold459 GLEAN mRNA 450027 467601 0.693067 - . ID=CGI_10018185; scaffold459 TRF Tandem_Repeat 450353 450403 52 + . . scaffold459 TRF Tandem_Repeat 455153 455190 60 + . . scaffold459 WUBlastX LINE_Penelope 459752 460141 53 - . . scaffold459 WUBlastX DNA_TcMar-Marin 462709 463251 96 + . . scaffold459 GLEAN promoter 467602 468601 0.693067 - . ID=CGI_10018185; scaffold459 TRF Tandem_Repeat 471148 471405 249 + . . scaffold459 TRF Tandem_Repeat 471275 474765 3276 + . . scaffold459 TRF Tandem_Repeat 471275 474765 3809 + . . scaffold459 TRF Tandem_Repeat 473073 473248 172 + . . scaffold459 TRF Tandem_Repeat 478103 479132 1963 + . . scaffold459 TRF Tandem_Repeat 478131 480376 1882 + . . scaffold459 TRF Tandem_Repeat 478133 480376 789 + . . scaffold459 TRF Tandem_Repeat 480803 480985 138 + . . scaffold459 TRF Tandem_Repeat 481470 481625 134 + . . scaffold459 GLEAN mRNA 485108 486205 0.999922 - . ID=CGI_10018186; scaffold459 GLEAN promoter 486206 487205 0.999922 - . ID=CGI_10018186; scaffold459 TRF Tandem_Repeat 488541 488568 56 + . . scaffold459 TRF Tandem_Repeat 489607 489743 238 + . . scaffold459 GLEAN mRNA 492233 513833 0.372595 - . ID=CGI_10018187; scaffold459 TRF Tandem_Repeat 494755 494814 120 + . . scaffold459 TRF Tandem_Repeat 510258 510308 102 + . . scaffold459 TRF Tandem_Repeat 510819 510885 71 + . . scaffold459 TRF Tandem_Repeat 510819 510885 80 + . . scaffold459 GLEAN promoter 513834 514833 0.372595 - . ID=CGI_10018187; scaffold459 TRF Tandem_Repeat 519941 519991 102 + . . scaffold459 WUBlastX LINE_L1-Tx1 532236 532544 26 - . . scaffold459 WUBlastX LINE_L1-Tx1 532538 532816 71 - . . scaffold459 WUBlastX LINE_L1-Tx1 532813 533730 172 - . . scaffold459 WUBlastX LINE_L1 533741 533986 82 - . . scaffold459 WUBlastX LINE_L1 533762 534028 51 - . . scaffold461 TRF Tandem_Repeat 2736 2791 105 + . . scaffold461 TRF Tandem_Repeat 3863 3907 81 + . . scaffold461 TRF Tandem_Repeat 20719 20768 100 + . . scaffold461 WUBlastX DNA_hAT-Tip100 34991 35377 68 - . . scaffold461 WUBlastX DNA_hAT-Tip100 35093 35881 478 - . . scaffold461 WUBlastX DNA_hAT-Tip100 35859 37136 840 - . . scaffold461 WUBlastX DNA_hAT-Tip100 35868 37436 498 - . . scaffold461 GLEAN mRNA 38459 51665 0.531716 - . ID=CGI_10020100; scaffold461 TRF Tandem_Repeat 42075 42131 51 + . . scaffold461 TRF Tandem_Repeat 42233 42277 63 + . . scaffold461 GLEAN promoter 50950 51949 1 + . ID=CGI_10020101; scaffold461 GLEAN promoter 51666 52665 0.531716 - . ID=CGI_10020100; scaffold461 GLEAN mRNA 51950 54861 1 + . ID=CGI_10020101; scaffold461 TRF Tandem_Repeat 55084 55215 77 + . . scaffold461 TRF Tandem_Repeat 55097 55215 111 + . . scaffold461 TRF Tandem_Repeat 55947 55972 52 + . . scaffold461 WUBlastX LTR_Gypsy 56811 57152 95 + . . scaffold461 WUBlastX LTR_Gypsy 56907 57179 100 + . . scaffold461 GLEAN mRNA 58119 64767 0.975345 - . ID=CGI_10020102; scaffold461 GLEAN promoter 64768 65767 0.975345 - . ID=CGI_10020102; scaffold461 WUBlastX LINE_L1 73601 74062 33 - . . scaffold461 WUBlastX LINE_RTE-X 89287 89706 51 + . . scaffold461 WUBlastX LINE_RTE-BovB 89365 89790 335 + . . scaffold461 WUBlastX LINE_RTE-BovB 89795 90016 134 + . . scaffold461 TRF Tandem_Repeat 90617 90653 74 + . . scaffold461 TRF Tandem_Repeat 92625 92701 118 + . . scaffold461 TRF Tandem_Repeat 92699 92765 125 + . . scaffold461 TRF Tandem_Repeat 93145 93194 57 + . . scaffold461 WUBlastX LINE_RTE-X 96224 96421 31 - . . scaffold461 WUBlastX LINE_RTE-X 96254 96421 51 - . . scaffold461 WUBlastX LINE_RTE-BovB 96436 96813 34 - . . scaffold461 WUBlastX LINE_RTE-X 96445 96753 70 - . . scaffold461 TRF Tandem_Repeat 99059 99112 99 + . . scaffold461 GLEAN mRNA 102409 102927 0.99802 - . ID=CGI_10020103; scaffold461 GLEAN promoter 102928 103927 0.99802 - . ID=CGI_10020103; scaffold461 WUBlastX DNA_TcMar-Tc1 103581 103757 81 + . . scaffold461 WUBlastX DNA_TcMar-Tc1 103786 104427 283 + . . scaffold461 TRF Tandem_Repeat 105072 105118 94 + . . scaffold461 TRF Tandem_Repeat 109042 109103 65 + . . scaffold461 TRF Tandem_Repeat 109042 109102 61 + . . scaffold461 TRF Tandem_Repeat 109972 110007 54 + . . scaffold461 TRF Tandem_Repeat 115226 115278 97 + . . scaffold461 WUBlastX LTR_Gypsy 119370 119726 112 - . . scaffold461 WUBlastX LTR_Gypsy 119451 119723 121 - . . scaffold461 WUBlastX LTR_Gypsy 119451 119813 50 - . . scaffold461 WUBlastX LTR_Gypsy 120686 121048 29 - . . scaffold461 WUBlastX LTR_Gypsy 120770 121057 92 - . . scaffold461 WUBlastX LTR_Gypsy 120905 121057 108 - . . scaffold461 WUBlastX LTR_Gypsy 121065 121436 220 - . . scaffold461 WUBlastX LTR_Gypsy 121065 122042 209 - . . scaffold461 WUBlastX LTR_Gypsy 121704 122045 246 - . . scaffold461 WUBlastX LTR_Gypsy 121740 122105 144 - . . scaffold461 WUBlastX LTR_Gypsy 122048 122224 117 - . . scaffold461 WUBlastX LTR_Gypsy 122054 122257 83 - . . scaffold461 WUBlastX LTR_Gypsy 122060 122293 58 - . . scaffold461 WUBlastX LTR_Gypsy 122649 123197 63 - . . scaffold461 WUBlastX LTR_Gypsy 122733 123572 221 - . . scaffold461 WUBlastX LTR_Gypsy 124064 124180 50 - . . scaffold461 TRF Tandem_Repeat 124387 124426 80 + . . scaffold461 WUBlastX LTR_Ngaro 140476 141333 35 - . . scaffold461 WUBlastX LTR_Ngaro 140861 140989 57 - . . scaffold461 WUBlastX LTR_Ngaro 141362 141535 82 - . . scaffold461 WUBlastX LTR_Ngaro 141531 141722 28 - . . scaffold461 WUBlastX LTR_Ngaro 141694 141963 80 - . . scaffold461 WUBlastX LTR_Ngaro 141694 141909 96 - . . scaffold461 WUBlastX LTR_Ngaro 142006 142386 242 - . . scaffold461 WUBlastX LTR_Ngaro 142392 142610 65 - . . scaffold461 WUBlastX LTR_Ngaro 142565 142687 36 - . . scaffold461 GLEAN mRNA 148548 152958 1 - . ID=CGI_10020104; scaffold461 GLEAN promoter 152106 153105 1 + . ID=CGI_10020105; scaffold461 GLEAN promoter 152959 153958 1 - . ID=CGI_10020104; scaffold461 GLEAN mRNA 153106 153747 1 + . ID=CGI_10020105; scaffold461 TRF Tandem_Repeat 157734 157799 105 + . . scaffold461 TRF Tandem_Repeat 159213 159299 77 + . . scaffold461 GLEAN promoter 174811 175810 0.394118 + . ID=CGI_10020106; scaffold461 GLEAN mRNA 175811 206021 0.394118 + . ID=CGI_10020106; scaffold461 TRF Tandem_Repeat 183122 183242 110 + . . scaffold461 TRF Tandem_Repeat 184274 184407 128 + . . scaffold461 TRF Tandem_Repeat 189189 189240 104 + . . scaffold461 TRF Tandem_Repeat 206943 207009 62 + . . scaffold461 TRF Tandem_Repeat 209364 209409 92 + . . scaffold461 TRF Tandem_Repeat 209595 209654 111 + . . scaffold461 TRF Tandem_Repeat 210164 210230 62 + . . scaffold461 TRF Tandem_Repeat 247204 247230 54 + . . scaffold461 TRF Tandem_Repeat 247327 247357 62 + . . scaffold461 TRF Tandem_Repeat 253570 253720 207 + . . scaffold461 GLEAN mRNA 255647 275095 0.999942 - . ID=CGI_10020107; scaffold461 WUBlastX DNA_TcMar-Tc1 266219 267142 387 - . . scaffold461 GLEAN promoter 275096 276095 0.999942 - . ID=CGI_10020107; scaffold461 TRF Tandem_Repeat 281713 281764 58 + . . scaffold461 GLEAN mRNA 287176 297048 0.67711 - . ID=CGI_10020108; scaffold461 WUBlastX DNA_IS4EU 288339 289103 101 - . . scaffold461 WUBlastX LINE_L2 292954 293055 27 - . . scaffold461 WUBlastX LINE_L2 292980 293318 119 - . . scaffold461 WUBlastX LINE_L2 293061 293318 156 - . . scaffold461 WUBlastX LINE_L2 293064 293426 109 - . . scaffold461 WUBlastX LINE_L2 293085 293603 65 - . . scaffold461 WUBlastX LINE_L2 293771 293842 20 - . . scaffold461 GLEAN promoter 297049 298048 0.67711 - . ID=CGI_10020108; scaffold461 TRF Tandem_Repeat 301257 301291 70 + . . scaffold461 TRF Tandem_Repeat 301619 301667 98 + . . scaffold461 WUBlastX DNA_Harbinger 303471 303734 200 + . . scaffold461 WUBlastX DNA_Harbinger 303477 303785 178 + . . scaffold461 WUBlastX DNA_Harbinger 304965 305234 23 + . . scaffold461 WUBlastX DNA_Harbinger 305010 305234 41 + . . scaffold461 GLEAN mRNA 305250 311818 1 - . ID=CGI_10020109; scaffold461 TRF Tandem_Repeat 307242 307281 73 + . . scaffold461 WUBlastX DNA_Harbinger 308211 308345 72 - . . scaffold461 WUBlastX DNA_Harbinger 308229 308372 72 - . . scaffold461 WUBlastX DNA_Harbinger 309022 309186 57 - . . scaffold461 WUBlastX DNA_Harbinger 309046 309222 27 - . . scaffold461 GLEAN promoter 311819 312818 1 - . ID=CGI_10020109; scaffold461 GLEAN mRNA 318338 325705 0.651135 - . ID=CGI_10020110; scaffold461 WUBlastX LINE_Penelope 324296 325357 195 + . . scaffold461 GLEAN promoter 325706 326705 0.651135 - . ID=CGI_10020110; scaffold461 GLEAN mRNA 327522 329419 0.999917 - . ID=CGI_10020111; scaffold461 GLEAN promoter 329420 330419 0.999917 - . ID=CGI_10020111; scaffold461 TRF Tandem_Repeat 331568 331610 77 + . . scaffold461 TRF Tandem_Repeat 335302 335335 68 + . . scaffold461 GLEAN mRNA 335350 337461 0.999917 - . ID=CGI_10020112; scaffold461 GLEAN promoter 337462 338461 0.999917 - . ID=CGI_10020112; scaffold461 TRF Tandem_Repeat 338556 338604 98 + . . scaffold461 TRF Tandem_Repeat 341065 341092 56 + . . scaffold461 TRF Tandem_Repeat 356863 356931 138 + . . scaffold461 TRF Tandem_Repeat 356929 356959 53 + . . scaffold461 TRF Tandem_Repeat 358296 358330 70 + . . scaffold461 GLEAN promoter 360482 361481 0.993527 + . ID=CGI_10020113; scaffold461 GLEAN mRNA 361482 362348 0.993527 + . ID=CGI_10020113; scaffold461 WUBlastX LINE_RTE-X 366566 367543 55 + . . scaffold461 WUBlastX LINE_RTE-X 366581 367009 76 + . . scaffold461 WUBlastX LINE_RTE-X 366854 367036 98 + . . scaffold461 TRF Tandem_Repeat 388271 389233 1277 + . . scaffold461 TRF Tandem_Repeat 425439 426216 926 + . . scaffold461 TRF Tandem_Repeat 442374 442546 229 + . . scaffold461 WUBlastX DNA_Sola 453109 453990 442 + . . scaffold461 WUBlastX DNA_Sola 453112 454563 432 + . . scaffold461 GLEAN mRNA 459552 460711 0.449006 - . ID=CGI_10020114; scaffold461 GLEAN promoter 460712 461711 0.449006 - . ID=CGI_10020114; scaffold461 WUBlastX RC_Helitron 461095 462411 543 - . . scaffold461 WUBlastX RC_Helitron 462411 463256 651 - . . scaffold461 WUBlastX RC_Helitron 463874 466714 1284 - . . scaffold461 WUBlastX RC_Helitron 467474 467737 37 - . . scaffold461 WUBlastX RC_Helitron 467567 467785 29 - . . scaffold461 GLEAN promoter 489267 490266 0.533668 + . ID=CGI_10020115; scaffold461 GLEAN mRNA 490267 497705 0.533668 + . ID=CGI_10020115; scaffold461 TRF Tandem_Repeat 495514 495538 50 + . . scaffold461 WUBlastX DNA_IS4EU 500643 500900 38 + . . scaffold461 GLEAN mRNA 501442 501951 0.618241 - . ID=CGI_10020116; scaffold461 WUBlastX LTR_Gypsy 501700 501897 24 - . . scaffold461 GLEAN promoter 501952 502951 0.618241 - . ID=CGI_10020116; scaffold461 GLEAN promoter 501998 502997 0.979735 + . ID=CGI_10020117; scaffold461 GLEAN mRNA 502998 509730 0.979735 + . ID=CGI_10020117; scaffold461 WUBlastX DNA_IS4EU 503394 503672 28 + . . scaffold461 WUBlastX DNA_IS4EU 503741 503860 44 + . . scaffold461 WUBlastX LINE_RTE-X 505588 505731 58 + . . scaffold461 WUBlastX LINE_RTE-X 505612 505803 63 + . . scaffold461 WUBlastX LINE_RTE-X 506029 506211 58 + . . scaffold461 WUBlastX LINE_RTE-X 506053 506301 28 + . . scaffold461 WUBlastX LTR_Gypsy 507230 508087 43 + . . scaffold461 WUBlastX LTR_Gypsy 507452 508414 171 + . . scaffold461 WUBlastX LTR_Gypsy-Cigr 507530 508102 199 + . . scaffold461 WUBlastX LTR_Gypsy-Cigr 508443 508961 158 + . . scaffold461 GLEAN promoter 509838 510837 0.712865 + . ID=CGI_10020118; scaffold461 GLEAN mRNA 510838 522193 0.712865 + . ID=CGI_10020118; scaffold461 TRF Tandem_Repeat 512997 513047 93 + . . scaffold461 TRF Tandem_Repeat 513451 513609 300 + . . scaffold461 TRF Tandem_Repeat 513727 513807 135 + . . scaffold461 WUBlastX LTR_Pao 515153 515593 116 + . . scaffold461 WUBlastX LTR_Pao 515204 515695 112 + . . scaffold461 WUBlastX LTR_Pao 515285 515593 135 + . . scaffold461 WUBlastX LTR_Ngaro 515704 516180 104 + . . scaffold461 GLEAN mRNA 527435 541725 0.999946 - . ID=CGI_10020119; scaffold461 GLEAN promoter 541726 542725 0.999946 - . ID=CGI_10020119; scaffold461 WUBlastX DNA_Maverick 543148 543393 112 + . . scaffold461 WUBlastX DNA_Maverick 543313 543492 44 + . . scaffold461 WUBlastX DNA_Maverick 543425 544219 108 + . . scaffold461 WUBlastX DNA_Maverick 543728 544219 152 + . . scaffold461 TRF Tandem_Repeat 545523 545952 335 + . . scaffold461 TRF Tandem_Repeat 545542 545914 210 + . . scaffold461 TRF Tandem_Repeat 545592 545914 233 + . . scaffold461 WUBlastX DNA_Maverick 546391 546663 116 - . . scaffold461 WUBlastX DNA_Maverick 546400 546585 124 - . . scaffold461 TRF Tandem_Repeat 546684 546723 80 + . . scaffold461 WUBlastX DNA_Maverick 547175 547231 21 - . . scaffold461 TRF Tandem_Repeat 549772 549871 92 + . . scaffold461 TRF Tandem_Repeat 549856 550002 84 + . . scaffold461 TRF Tandem_Repeat 552454 552567 106 + . . scaffold461 TRF Tandem_Repeat 553789 553944 120 + . . scaffold461 TRF Tandem_Repeat 553790 553909 101 + . . scaffold461 TRF Tandem_Repeat 553987 554099 70 + . . scaffold461 TRF Tandem_Repeat 553988 554078 76 + . . scaffold461 TRF Tandem_Repeat 554146 554717 608 + . . scaffold461 TRF Tandem_Repeat 554250 554397 58 + . . scaffold461 WUBlastX LINE_L1-Tx1 559388 560116 93 + . . scaffold461 WUBlastX LINE_L1-Tx1 559397 560257 36 + . . scaffold461 TRF Tandem_Repeat 560511 560616 131 + . . scaffold461 GLEAN promoter 561642 562641 0.983518 + . ID=CGI_10020120; scaffold461 GLEAN mRNA 562642 583275 0.983518 + . ID=CGI_10020120; scaffold461 TRF Tandem_Repeat 564602 564654 52 + . . scaffold461 TRF Tandem_Repeat 564604 564659 58 + . . scaffold461 TRF Tandem_Repeat 571427 571484 109 + . . scaffold461 TRF Tandem_Repeat 576190 576246 53 + . . scaffold461 TRF Tandem_Repeat 576198 576263 71 + . . scaffold461 TRF Tandem_Repeat 578586 578649 128 + . . scaffold461 TRF Tandem_Repeat 585203 585251 98 + . . scaffold461 TRF Tandem_Repeat 585755 585888 103 + . . scaffold461 TRF Tandem_Repeat 586900 587020 107 + . . scaffold461 TRF Tandem_Repeat 592487 592539 106 + . . scaffold461 TRF Tandem_Repeat 595829 595878 93 + . . scaffold461 WUBlastX LTR_Gypsy 598007 598489 35 - . . scaffold461 WUBlastX LTR_Gypsy 598169 598519 53 - . . scaffold461 WUBlastX LTR_Gypsy 598226 598507 114 - . . scaffold461 WUBlastX LTR_Gypsy 598488 598550 23 - . . scaffold461 TRF Tandem_Repeat 599914 600011 63 + . . scaffold461 TRF Tandem_Repeat 600167 600238 65 + . . scaffold461 TRF Tandem_Repeat 600177 600229 72 + . . scaffold461 GLEAN mRNA 600431 600907 1 - . ID=CGI_10020121; scaffold461 GLEAN promoter 600908 601907 1 - . ID=CGI_10020121; scaffold461 GLEAN mRNA 602002 607058 1 - . ID=CGI_10020122; scaffold461 GLEAN promoter 607059 608058 1 - . ID=CGI_10020122; scaffold461 TRF Tandem_Repeat 611406 611514 58 + . . scaffold461 TRF Tandem_Repeat 615837 615917 162 + . . scaffold461 WUBlastX DNA_Maverick 622192 623190 288 + . . scaffold461 WUBlastX DNA_Maverick 622195 622941 336 + . . scaffold461 WUBlastX DNA_Maverick 623192 623989 472 + . . scaffold461 WUBlastX DNA_Maverick 623192 623866 547 + . . scaffold461 WUBlastX DNA_Maverick 623899 624204 204 + . . scaffold461 WUBlastX DNA_Maverick 624234 624533 243 + . . scaffold461 WUBlastX DNA_Maverick 624602 624748 40 + . . scaffold461 WUBlastX DNA_Maverick 624629 624760 76 + . . scaffold461 WUBlastX DNA_Maverick 624718 625071 200 + . . scaffold462 GLEAN promoter 402 1401 1 + . ID=CGI_10000714; scaffold462 GLEAN mRNA 1402 8627 1 + . ID=CGI_10000714; scaffold462 WUBlastX LINE_Penelope 4411 5175 109 + . . scaffold462 TRF Tandem_Repeat 6244 6323 160 + . . scaffold463 TRF Tandem_Repeat 7395 7446 50 + . . scaffold463 TRF Tandem_Repeat 21471 21564 81 + . . scaffold463 TRF Tandem_Repeat 24497 24601 94 + . . scaffold463 GLEAN mRNA 29508 44578 1 - . ID=CGI_10004288; scaffold463 TRF Tandem_Repeat 40468 40499 64 + . . scaffold463 TRF Tandem_Repeat 41985 42025 82 + . . scaffold463 WUBlastX LINE_L2 43225 43698 422 - . . scaffold463 TRF Tandem_Repeat 43760 43788 58 + . . scaffold463 GLEAN promoter 44301 45300 1 + . ID=CGI_10004289; scaffold463 GLEAN promoter 44579 45578 1 - . ID=CGI_10004288; scaffold463 GLEAN mRNA 45301 55609 1 + . ID=CGI_10004289; scaffold463 TRF Tandem_Repeat 53021 53059 78 + . . scaffold463 TRF Tandem_Repeat 53114 53145 64 + . . scaffold463 GLEAN promoter 62816 63815 1 + . ID=CGI_10004290; scaffold463 GLEAN mRNA 63816 67930 1 + . ID=CGI_10004290; scaffold463 GLEAN mRNA 69574 86725 0.820612 - . ID=CGI_10004291; scaffold463 TRF Tandem_Repeat 78768 78794 54 + . . scaffold463 TRF Tandem_Repeat 79554 80295 735 + . . scaffold463 GLEAN promoter 86726 87725 0.820612 - . ID=CGI_10004291; scaffold465 WUBlastX LINE_CR1-L2 1774 2094 50 + . . scaffold465 WUBlastX LINE_CR1 2121 2408 126 + . . scaffold465 WUBlastX LINE_L2 2213 2725 145 + . . scaffold465 WUBlastX LINE_L2 2291 2725 265 + . . scaffold465 WUBlastX LINE_CR1 2393 2842 117 + . . scaffold465 TRF Tandem_Repeat 2911 2942 64 + . . scaffold465 GLEAN mRNA 3739 24812 0.570137 - . ID=CGI_10003823; scaffold465 TRF Tandem_Repeat 10553 10614 106 + . . scaffold465 TRF Tandem_Repeat 11539 11575 74 + . . scaffold465 TRF Tandem_Repeat 19080 19116 74 + . . scaffold465 TRF Tandem_Repeat 20537 20576 80 + . . scaffold465 TRF Tandem_Repeat 22830 23055 407 + . . scaffold465 GLEAN promoter 23987 24986 0.914919 + . ID=CGI_10003824; scaffold465 GLEAN promoter 24813 25812 0.570137 - . ID=CGI_10003823; scaffold465 GLEAN mRNA 24987 42664 0.914919 + . ID=CGI_10003824; scaffold465 TRF Tandem_Repeat 61116 61173 98 + . . scaffold465 TRF Tandem_Repeat 67420 67459 71 + . . scaffold465 WUBlastX DNA_IS4EU 68447 68989 203 - . . scaffold465 WUBlastX DNA_Kolobok-IS4 68965 69444 58 - . . scaffold465 WUBlastX DNA_Kolobok-IS4 69971 70180 61 + . . scaffold465 WUBlastX DNA_Kolobok-IS4 70161 70715 115 + . . scaffold465 WUBlastX DNA_IS4EU 70173 70640 162 + . . scaffold465 GLEAN mRNA 71111 77466 0.998573 - . ID=CGI_10003826; scaffold465 TRF Tandem_Repeat 71605 71636 64 + . . scaffold465 GLEAN promoter 73843 74842 1 + . ID=CGI_10003827; scaffold465 GLEAN mRNA 74843 79514 1 + . ID=CGI_10003827; scaffold465 GLEAN promoter 77467 78466 0.998573 - . ID=CGI_10003826; scaffold465 WUBlastX LINE_Penelope 83349 83873 62 - . . scaffold465 WUBlastX LINE_Penelope 83433 83930 137 - . . scaffold465 WUBlastX LINE_Penelope 83846 83977 31 - . . scaffold466 GLEAN promoter 1 176 0.985777 + . ID=CGI_10002774; scaffold466 GLEAN mRNA 177 10344 0.985777 + . ID=CGI_10002774; scaffold466 GLEAN mRNA 12881 21342 0.999351 - . ID=CGI_10002775; scaffold466 GLEAN promoter 21343 22342 0.999351 - . ID=CGI_10002775; scaffold466 GLEAN promoter 21997 22996 0.999441 + . ID=CGI_10002776; scaffold466 GLEAN mRNA 22997 24498 0.999441 + . ID=CGI_10002776; scaffold466 GLEAN promoter 23540 24539 0.999968 + . ID=CGI_10002777; scaffold466 GLEAN mRNA 24540 25616 0.999968 + . ID=CGI_10002777; scaffold467 TRF Tandem_Repeat 1437 1545 200 + . . scaffold467 TRF Tandem_Repeat 10694 10809 232 + . . scaffold467 WUBlastX LINE_Penelope 39087 39605 33 + . . scaffold467 WUBlastX LINE_L2 43831 44343 114 + . . scaffold467 WUBlastX LINE_L1 43909 44376 185 + . . scaffold467 WUBlastX LINE_CR1 44362 44787 39 + . . scaffold467 WUBlastX LINE_RTE-X 44509 44856 71 + . . scaffold467 WUBlastX LINE_RTE-X 44910 45185 49 + . . scaffold467 WUBlastX LINE_RTE-X 45194 45853 67 + . . scaffold467 WUBlastX LINE_RTE-X 45314 47065 399 + . . scaffold467 WUBlastX LINE_RTE-X 47071 47787 240 + . . scaffold467 GLEAN mRNA 49927 75620 0.920455 - . ID=CGI_10004063; scaffold467 GLEAN promoter 75611 76610 1 + . ID=CGI_10004064; scaffold467 GLEAN promoter 75621 76620 0.920455 - . ID=CGI_10004063; scaffold467 GLEAN mRNA 76611 77478 1 + . ID=CGI_10004064; scaffold467 GLEAN promoter 76624 77623 0.983742 + . ID=CGI_10004065; scaffold467 GLEAN mRNA 77624 89644 0.983742 + . ID=CGI_10004065; scaffold469 GLEAN promoter 356 1355 1 + . ID=CGI_10024664; scaffold469 GLEAN mRNA 1356 5417 1 + . ID=CGI_10024664; scaffold469 GLEAN mRNA 29626 74346 0.99227 - . ID=CGI_10024665; scaffold469 TRF Tandem_Repeat 69927 69980 101 + . . scaffold469 GLEAN promoter 74347 75346 0.99227 - . ID=CGI_10024665; scaffold469 GLEAN promoter 80197 81196 1 + . ID=CGI_10024666; scaffold469 GLEAN mRNA 81197 84214 1 + . ID=CGI_10024666; scaffold469 GLEAN mRNA 86018 101024 0.999046 - . ID=CGI_10024667; scaffold469 TRF Tandem_Repeat 99645 99970 331 + . . scaffold469 TRF Tandem_Repeat 99651 99970 225 + . . scaffold469 TRF Tandem_Repeat 99651 99960 294 + . . scaffold469 GLEAN promoter 101025 102024 0.999046 - . ID=CGI_10024667; scaffold469 GLEAN mRNA 102901 107728 1 - . ID=CGI_10024668; scaffold469 TRF Tandem_Repeat 104928 105785 1177 + . . scaffold469 TRF Tandem_Repeat 105792 105827 54 + . . scaffold469 TRF Tandem_Repeat 105796 105826 53 + . . scaffold469 WUBlastX DNA_hAT 107063 107755 131 - . . scaffold469 GLEAN promoter 107729 108728 1 - . ID=CGI_10024668; scaffold469 TRF Tandem_Repeat 112517 112562 92 + . . scaffold469 TRF Tandem_Repeat 118892 118934 86 + . . scaffold469 TRF Tandem_Repeat 133041 133095 51 + . . scaffold469 TRF Tandem_Repeat 133042 133072 55 + . . scaffold469 TRF Tandem_Repeat 133042 133087 58 + . . scaffold469 WUBlastX LTR_Ngaro 137499 137891 240 + . . scaffold469 WUBlastX LTR_Ngaro 137869 138603 222 + . . scaffold469 WUBlastX LTR_Ngaro 138606 138881 94 + . . scaffold469 WUBlastX LTR_Ngaro 138615 138848 104 + . . scaffold469 WUBlastX LTR_Ngaro 138987 139313 154 + . . scaffold469 GLEAN mRNA 146084 157322 0.988922 - . ID=CGI_10024669; scaffold469 WUBlastX LTR_Pao 151307 152074 694 - . . scaffold469 WUBlastX LTR_Pao 152073 153203 813 - . . scaffold469 GLEAN promoter 157323 158322 0.988922 - . ID=CGI_10024669; scaffold469 WUBlastX DNA_Crypton 158257 158841 121 + . . scaffold469 WUBlastX DNA_Crypton 159166 159615 90 + . . scaffold469 WUBlastX DNA_Crypton 159202 159465 99 + . . scaffold469 WUBlastX DNA_MuDR 174038 174175 58 + . . scaffold469 TRF Tandem_Repeat 174932 175718 1013 + . . scaffold469 WUBlastX LTR_Ngaro 178268 178441 93 - . . scaffold469 WUBlastX LTR_Ngaro 178455 178829 108 - . . scaffold469 TRF Tandem_Repeat 179567 179915 270 + . . scaffold469 TRF Tandem_Repeat 179646 179904 293 + . . scaffold469 TRF Tandem_Repeat 185095 185157 126 + . . scaffold469 WUBlastX LTR_Gypsy 186212 186694 177 + . . scaffold469 WUBlastX LTR_Gypsy 186293 187090 450 + . . scaffold469 WUBlastX LTR_Gypsy 186296 187306 369 + . . scaffold469 WUBlastX LTR_Gypsy 198431 198769 96 + . . scaffold469 WUBlastX LTR_Gypsy 198512 199522 68 + . . scaffold469 WUBlastX LTR_Gypsy 198515 199348 173 + . . scaffold469 TRF Tandem_Repeat 199534 200129 431 + . . scaffold469 WUBlastX RC_Helitron 200207 200422 48 + . . scaffold469 WUBlastX RC_Helitron 200434 200958 68 + . . scaffold469 WUBlastX RC_Helitron 200434 200829 110 + . . scaffold469 TRF Tandem_Repeat 201714 201780 134 + . . scaffold469 TRF Tandem_Repeat 202259 202402 179 + . . scaffold469 TRF Tandem_Repeat 215498 215531 52 + . . scaffold469 GLEAN mRNA 225561 225865 0.988138 - . ID=CGI_10024670; scaffold469 GLEAN promoter 225866 226865 0.988138 - . ID=CGI_10024670; scaffold469 TRF Tandem_Repeat 226615 226648 59 + . . scaffold469 TRF Tandem_Repeat 226646 226676 62 + . . scaffold469 TRF Tandem_Repeat 239902 240091 200 + . . scaffold469 TRF Tandem_Repeat 239902 240091 200 + . . scaffold469 TRF Tandem_Repeat 242321 242449 224 + . . scaffold469 TRF Tandem_Repeat 242323 242450 203 + . . scaffold469 TRF Tandem_Repeat 244341 244423 157 + . . scaffold469 TRF Tandem_Repeat 245566 245622 114 + . . scaffold469 TRF Tandem_Repeat 252054 252107 108 + . . scaffold469 TRF Tandem_Repeat 252202 252243 57 + . . scaffold469 WUBlastX LTR_Gypsy 252457 254730 1517 + . . scaffold469 WUBlastX LTR_Gypsy 254721 255125 309 + . . scaffold469 WUBlastX LTR_Gypsy 255086 256363 421 + . . scaffold469 WUBlastX LTR_Gypsy 255155 256213 948 + . . scaffold469 TRF Tandem_Repeat 257299 257349 102 + . . scaffold469 TRF Tandem_Repeat 257824 257889 125 + . . scaffold469 TRF Tandem_Repeat 266784 266832 98 + . . scaffold469 GLEAN mRNA 276616 279170 0.512653 - . ID=CGI_10024671; scaffold469 GLEAN promoter 279171 280170 0.512653 - . ID=CGI_10024671; scaffold469 TRF Tandem_Repeat 286125 286161 74 + . . scaffold469 TRF Tandem_Repeat 287298 287344 94 + . . scaffold469 TRF Tandem_Repeat 296087 296153 134 + . . scaffold469 TRF Tandem_Repeat 300481 300530 100 + . . scaffold469 WUBlastX LINE_L2 302670 303224 94 - . . scaffold469 WUBlastX LINE_CR1-L2 303229 303348 42 - . . scaffold469 WUBlastX LINE_CR1-L2 303338 303430 46 - . . scaffold469 WUBlastX LINE_RTE-BovB 305023 305250 77 + . . scaffold469 GLEAN promoter 323738 324737 0.682313 + . ID=CGI_10024672; scaffold469 GLEAN mRNA 324738 328287 0.682313 + . ID=CGI_10024672; scaffold469 WUBlastX LINE_CR1 329956 330087 31 + . . scaffold469 WUBlastX LINE_CR1 329983 330075 34 + . . scaffold469 WUBlastX LINE_CR1 329998 330075 58 + . . scaffold469 WUBlastX LINE_CR1 330018 330254 80 + . . scaffold469 WUBlastX LINE_CR1 330080 330841 271 + . . scaffold469 WUBlastX LINE_CR1 330263 330793 313 + . . scaffold469 WUBlastX LINE_CR1 330845 331324 51 + . . scaffold469 WUBlastX LINE_CR1 330944 331315 164 + . . scaffold469 TRF Tandem_Repeat 344721 344771 102 + . . scaffold469 GLEAN mRNA 345885 346673 0.967462 - . ID=CGI_10024673; scaffold469 WUBlastX LTR_ERVK 346341 346448 40 - . . scaffold469 GLEAN promoter 346674 347673 0.967462 - . ID=CGI_10024673; scaffold469 GLEAN mRNA 349067 353564 0.973966 - . ID=CGI_10024674; scaffold469 GLEAN promoter 353565 354564 0.973966 - . ID=CGI_10024674; scaffold469 GLEAN promoter 354082 355081 0.99368 + . ID=CGI_10024675; scaffold469 GLEAN mRNA 355082 359142 0.99368 + . ID=CGI_10024675; scaffold469 GLEAN promoter 359650 360649 0.776926 + . ID=CGI_10024676; scaffold469 TRF Tandem_Repeat 360133 360638 904 + . . scaffold469 GLEAN mRNA 360650 370136 0.776926 + . ID=CGI_10024676; scaffold469 TRF Tandem_Repeat 375898 376029 115 + . . scaffold469 WUBlastX LINE_RTE-X 376997 377365 24 + . . scaffold469 WUBlastX LINE_RTE-X 377063 377347 41 + . . scaffold469 WUBlastX LINE_RTE-X 377123 377338 72 + . . scaffold469 WUBlastX LINE_RTE-X 377346 377453 44 + . . scaffold469 WUBlastX LINE_RTE-X 377364 377576 45 + . . scaffold469 GLEAN mRNA 407745 410046 0.842627 - . ID=CGI_10024677; scaffold469 TRF Tandem_Repeat 409473 409645 161 + . . scaffold469 GLEAN promoter 410047 411046 0.842627 - . ID=CGI_10024677; scaffold469 GLEAN mRNA 411771 413362 0.999976 - . ID=CGI_10024678; scaffold469 GLEAN promoter 413130 414129 1 + . ID=CGI_10024679; scaffold469 GLEAN promoter 413363 414362 0.999976 - . ID=CGI_10024678; scaffold469 GLEAN mRNA 414130 418874 1 + . ID=CGI_10024679; scaffold469 TRF Tandem_Repeat 415907 415942 72 + . . scaffold469 GLEAN promoter 418602 419601 0.999676 + . ID=CGI_10024680; scaffold469 GLEAN mRNA 419602 429524 0.999676 + . ID=CGI_10024680; scaffold469 GLEAN mRNA 433055 439080 0.999464 - . ID=CGI_10024681; scaffold469 GLEAN promoter 439081 440080 0.999464 - . ID=CGI_10024681; scaffold469 TRF Tandem_Repeat 439275 439312 76 + . . scaffold469 WUBlastX LINE_RTE-X 442614 443393 131 - . . scaffold469 WUBlastX LINE_RTE-X 442773 443768 646 - . . scaffold469 WUBlastX LINE_L2 443301 443864 85 - . . scaffold469 GLEAN mRNA 454430 455506 0.999983 - . ID=CGI_10024682; scaffold469 GLEAN promoter 455507 456506 0.999983 - . ID=CGI_10024682; scaffold469 GLEAN mRNA 457611 459767 0.984023 - . ID=CGI_10024683; scaffold469 GLEAN promoter 459768 460767 0.984023 - . ID=CGI_10024683; scaffold469 GLEAN mRNA 460575 461735 0.984023 - . ID=CGI_10024684; scaffold469 GLEAN promoter 461736 462735 0.984023 - . ID=CGI_10024684; scaffold469 TRF Tandem_Repeat 465261 465300 80 + . . scaffold469 GLEAN promoter 466308 467307 0.999627 + . ID=CGI_10024685; scaffold469 GLEAN mRNA 467308 475107 0.999627 + . ID=CGI_10024685; scaffold469 GLEAN mRNA 482418 483350 1 - . ID=CGI_10024686; scaffold469 GLEAN promoter 483351 484350 1 - . ID=CGI_10024686; scaffold469 GLEAN mRNA 494624 506505 1 - . ID=CGI_10024687; scaffold469 GLEAN promoter 506506 507505 1 - . ID=CGI_10024687; scaffold469 TRF Tandem_Repeat 507784 507821 76 + . . scaffold469 TRF Tandem_Repeat 517545 517632 149 + . . scaffold469 TRF Tandem_Repeat 520085 520148 110 + . . scaffold469 TRF Tandem_Repeat 531393 531423 62 + . . scaffold469 TRF Tandem_Repeat 533783 533852 122 + . . scaffold469 TRF Tandem_Repeat 538421 539095 879 + . . scaffold469 TRF Tandem_Repeat 543991 544045 101 + . . scaffold469 TRF Tandem_Repeat 551324 551491 173 + . . scaffold469 TRF Tandem_Repeat 551324 551491 185 + . . scaffold469 TRF Tandem_Repeat 551327 551490 168 + . . scaffold469 TRF Tandem_Repeat 563968 564009 84 + . . scaffold469 TRF Tandem_Repeat 564830 565008 171 + . . scaffold469 TRF Tandem_Repeat 565021 565184 184 + . . scaffold469 TRF Tandem_Repeat 565065 565184 186 + . . scaffold469 TRF Tandem_Repeat 565269 565355 122 + . . scaffold469 TRF Tandem_Repeat 575514 575753 138 + . . scaffold469 TRF Tandem_Repeat 582569 582789 168 + . . scaffold469 TRF Tandem_Repeat 584234 584340 178 + . . scaffold469 TRF Tandem_Repeat 591325 591465 246 + . . scaffold469 WUBlastX LINE_L2 592605 592694 43 + . . scaffold469 GLEAN promoter 596386 597385 1 + . ID=CGI_10024688; scaffold469 GLEAN mRNA 597386 616988 1 + . ID=CGI_10024688; scaffold469 GLEAN mRNA 602076 609647 0.999676 - . ID=CGI_10024689; scaffold469 WUBlastX DNA_P 602085 602297 28 + . . scaffold469 GLEAN promoter 609648 610647 0.999676 - . ID=CGI_10024689; scaffold469 TRF Tandem_Repeat 613325 613363 78 + . . scaffold469 GLEAN promoter 619008 620007 0.99956 + . ID=CGI_10024690; scaffold469 GLEAN mRNA 620008 639653 0.99956 + . ID=CGI_10024690; scaffold469 WUBlastX LTR_Pao 620632 621081 85 - . . scaffold469 WUBlastX LTR_Pao 621095 621472 317 - . . scaffold469 WUBlastX LTR_Pao 621467 621871 134 - . . scaffold469 WUBlastX LTR_Pao 621539 622150 345 - . . scaffold469 WUBlastX LTR_Pao 621566 622261 193 - . . scaffold469 WUBlastX LTR_Pao 622239 622523 148 - . . scaffold469 WUBlastX LTR_Pao 622545 622973 352 + . . scaffold469 WUBlastX LTR_Pao 622979 623332 144 + . . scaffold469 WUBlastX LTR_Pao 623045 623326 154 + . . scaffold469 WUBlastX LTR_Pao 623338 623568 126 + . . scaffold469 WUBlastX LTR_Pao 623550 624077 372 + . . scaffold469 WUBlastX LTR_Pao 623577 624167 124 + . . scaffold469 WUBlastX LTR_Pao 624167 624739 456 + . . scaffold469 WUBlastX LTR_Pao 624712 625515 609 + . . scaffold469 TRF Tandem_Repeat 631744 631791 96 + . . scaffold469 TRF Tandem_Repeat 634624 634670 53 + . . scaffold469 WUBlastX LINE_RTE-BovB 640622 640801 29 - . . scaffold469 WUBlastX LINE_RTE-BovB 640650 641669 648 - . . scaffold469 WUBlastX LINE_RTE-X 641241 641747 70 - . . scaffold469 GLEAN promoter 642085 643084 0.999998 + . ID=CGI_10024691; scaffold469 GLEAN mRNA 643085 672384 0.999998 + . ID=CGI_10024691; scaffold469 TRF Tandem_Repeat 663886 663911 52 + . . scaffold469 TRF Tandem_Repeat 670219 670244 52 + . . scaffold469 GLEAN mRNA 673707 700737 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 684570 684635 98 + . . scaffold469 TRF Tandem_Repeat 685515 685593 56 + . . scaffold469 TRF Tandem_Repeat 685620 685680 59 + . . scaffold469 TRF Tandem_Repeat 686987 688026 1552 + . . scaffold469 TRF Tandem_Repeat 692239 693073 1546 + . . scaffold469 TRF Tandem_Repeat 693078 693123 74 + . . scaffold469 TRF Tandem_Repeat 693078 693136 64 + . . scaffold469 WUBlastX LINE_L1-Tx1 695282 695497 59 + . . scaffold469 WUBlastX LINE_L1-Tx1 695312 695599 44 + . . scaffold469 TRF Tandem_Repeat 695818 696643 1157 + . . scaffold469 TRF Tandem_Repeat 700006 700057 104 + . . scaffold469 GLEAN promoter 700738 701737 0.794331 - . ID=CGI_10024692; scaffold469 TRF Tandem_Repeat 712140 712174 61 + . . scaffold469 GLEAN mRNA 740084 746030 0.783421 - . ID=CGI_10024693; scaffold469 GLEAN promoter 745762 746761 1 + . ID=CGI_10024694; scaffold469 GLEAN promoter 746031 747030 0.783421 - . ID=CGI_10024693; scaffold469 GLEAN mRNA 746762 755526 1 + . ID=CGI_10024694; scaffold469 GLEAN mRNA 758145 776726 0.999997 - . ID=CGI_10024695; scaffold469 GLEAN promoter 772871 773870 0.999676 + . ID=CGI_10024696; scaffold469 GLEAN mRNA 773871 783058 0.999676 + . ID=CGI_10024696; scaffold469 GLEAN promoter 776727 777726 0.999997 - . ID=CGI_10024695; scaffold469 TRF Tandem_Repeat 785272 785581 173 + . . scaffold469 GLEAN mRNA 806883 808405 1 - . ID=CGI_10024697; scaffold469 GLEAN promoter 808406 809405 1 - . ID=CGI_10024697; scaffold469 TRF Tandem_Repeat 812474 812506 57 + . . scaffold469 TRF Tandem_Repeat 812506 812534 58 + . . scaffold469 GLEAN mRNA 824216 847987 1 - . ID=CGI_10024698; scaffold469 TRF Tandem_Repeat 825812 825843 64 + . . scaffold469 WUBlastX LINE_L2 827262 827612 30 - . . scaffold469 WUBlastX LINE_CR1-L2 827361 827750 35 - . . scaffold469 TRF Tandem_Repeat 831903 831939 58 + . . scaffold469 TRF Tandem_Repeat 841847 841880 68 + . . scaffold469 TRF Tandem_Repeat 843233 843308 80 + . . scaffold469 GLEAN promoter 844887 845886 0.770525 + . ID=CGI_10024699; scaffold469 GLEAN mRNA 845887 871744 0.770525 + . ID=CGI_10024699; scaffold469 GLEAN promoter 847988 848987 1 - . ID=CGI_10024698; scaffold469 GLEAN promoter 875043 876042 0.531613 + . ID=CGI_10024700; scaffold469 GLEAN mRNA 876043 877092 0.531613 + . ID=CGI_10024700; scaffold469 TRF Tandem_Repeat 879302 879331 51 + . . scaffold469 TRF Tandem_Repeat 879766 879796 62 + . . scaffold469 TRF Tandem_Repeat 881421 881454 68 + . . scaffold469 GLEAN mRNA 885080 899783 0.999676 - . ID=CGI_10024701; scaffold469 GLEAN promoter 899192 900191 1 + . ID=CGI_10024702; scaffold469 GLEAN promoter 899784 900783 0.999676 - . ID=CGI_10024701; scaffold469 GLEAN mRNA 900192 905547 1 + . ID=CGI_10024702; scaffold469 GLEAN promoter 924100 925099 0.564574 + . ID=CGI_10024703; scaffold469 GLEAN mRNA 925100 941633 0.564574 + . ID=CGI_10024703; scaffold469 WUBlastX LINE_CR1-L2 927871 928071 23 + . . scaffold469 WUBlastX LINE_CR1-L2 928046 928261 44 + . . scaffold469 WUBlastX LINE_RTE-X 936864 937904 452 - . . scaffold469 WUBlastX LINE_RTE-X 937614 937961 81 - . . scaffold469 TRF Tandem_Repeat 940775 941043 283 + . . scaffold469 GLEAN promoter 943862 944861 0.733321 + . ID=CGI_10024704; scaffold469 GLEAN mRNA 944862 945728 0.733321 + . ID=CGI_10024704; scaffold469 GLEAN mRNA 948137 949184 0.995722 - . ID=CGI_10024705; scaffold469 GLEAN promoter 949185 950184 0.995722 - . ID=CGI_10024705; scaffold469 GLEAN promoter 950675 951674 0.528485 + . ID=CGI_10024706; scaffold469 GLEAN mRNA 951675 953075 0.528485 + . ID=CGI_10024706; scaffold469 GLEAN promoter 966010 967009 0.836235 + . ID=CGI_10024707; scaffold469 GLEAN mRNA 967010 968407 0.836235 + . ID=CGI_10024707; scaffold47 GLEAN mRNA 20135 33676 0.999415 - . ID=CGI_10002504; scaffold47 TRF Tandem_Repeat 21932 22925 1460 + . . scaffold47 WUBlastX DNA_TcMar-Tc2 24964 25263 76 - . . scaffold47 WUBlastX DNA_TcMar-Fot1 25905 26228 92 - . . scaffold47 WUBlastX DNA_TcMar-Tc2 25956 26684 158 - . . scaffold47 GLEAN promoter 33677 34676 0.999415 - . ID=CGI_10002504; scaffold47 WUBlastX LINE_L2 38087 38488 105 - . . scaffold47 TRF Tandem_Repeat 43339 43446 128 + . . scaffold47 TRF Tandem_Repeat 45789 45833 56 + . . scaffold47 TRF Tandem_Repeat 46103 46190 95 + . . scaffold47 TRF Tandem_Repeat 47763 47856 125 + . . scaffold470 WUBlastX LTR_Gypsy-Cigr 743 775 25 + . . scaffold470 WUBlastX LTR_Gypsy 1167 1280 20 + . . scaffold470 WUBlastX LTR_Gypsy 1227 1295 36 + . . scaffold470 WUBlastX LTR_Gypsy 1355 1483 21 + . . scaffold470 WUBlastX LTR_Gypsy 1397 1513 95 + . . scaffold470 WUBlastX LTR_Gypsy 1518 2093 217 + . . scaffold470 WUBlastX LTR_Gypsy 2102 2578 389 + . . scaffold470 WUBlastX LTR_Gypsy 2519 2995 211 + . . scaffold470 TRF Tandem_Repeat 11333 11699 285 + . . scaffold470 TRF Tandem_Repeat 11338 11699 282 + . . scaffold470 TRF Tandem_Repeat 13461 13493 57 + . . scaffold470 TRF Tandem_Repeat 14093 14287 225 + . . scaffold470 TRF Tandem_Repeat 14123 14332 92 + . . scaffold470 TRF Tandem_Repeat 22430 22463 68 + . . scaffold470 TRF Tandem_Repeat 24733 24779 85 + . . scaffold471 TRF Tandem_Repeat 347 1143 1382 + . . scaffold471 TRF Tandem_Repeat 1152 1251 83 + . . scaffold471 TRF Tandem_Repeat 1152 1251 103 + . . scaffold471 TRF Tandem_Repeat 1157 1250 125 + . . scaffold471 GLEAN mRNA 5407 13553 0.544116 - . ID=CGI_10026995; scaffold471 GLEAN promoter 13554 14553 0.544116 - . ID=CGI_10026995; scaffold471 GLEAN promoter 16590 17589 0.934395 + . ID=CGI_10026996; scaffold471 GLEAN mRNA 17590 22781 0.934395 + . ID=CGI_10026996; scaffold471 GLEAN mRNA 33371 39519 0.645615 - . ID=CGI_10026997; scaffold471 TRF Tandem_Repeat 35855 36681 801 + . . scaffold471 GLEAN promoter 39520 40519 0.645615 - . ID=CGI_10026997; scaffold471 GLEAN mRNA 43733 58122 0.74595 - . ID=CGI_10026998; scaffold471 TRF Tandem_Repeat 46922 47121 173 + . . scaffold471 TRF Tandem_Repeat 46922 47121 171 + . . scaffold471 GLEAN promoter 52233 53232 0.119206 + . ID=CGI_10026999; scaffold471 GLEAN mRNA 53233 71984 0.119206 + . ID=CGI_10026999; scaffold471 TRF Tandem_Repeat 54382 54436 110 + . . scaffold471 GLEAN promoter 58123 59122 0.74595 - . ID=CGI_10026998; scaffold471 TRF Tandem_Repeat 58425 58465 82 + . . scaffold471 WUBlastX LTR_ERV1 67862 68068 26 + . . scaffold471 TRF Tandem_Repeat 73043 73087 72 + . . scaffold471 TRF Tandem_Repeat 73043 73090 53 + . . scaffold471 TRF Tandem_Repeat 76437 76693 442 + . . scaffold471 GLEAN promoter 83725 84724 0.999744 + . ID=CGI_10027000; scaffold471 GLEAN mRNA 84725 99079 0.999744 + . ID=CGI_10027000; scaffold471 WUBlastX LINE_RTE-BovB 88924 89076 56 - . . scaffold471 TRF Tandem_Repeat 91185 91681 852 + . . scaffold471 GLEAN mRNA 98593 104621 0.352677 - . ID=CGI_10027001; scaffold471 GLEAN promoter 100448 101447 0.0999773 + . ID=CGI_10027002; scaffold471 GLEAN mRNA 101448 110787 0.0999773 + . ID=CGI_10027002; scaffold471 GLEAN promoter 104622 105621 0.352677 - . ID=CGI_10027001; scaffold471 GLEAN mRNA 114102 117855 0.836238 - . ID=CGI_10027003; scaffold471 GLEAN promoter 117856 118855 0.836238 - . ID=CGI_10027003; scaffold471 TRF Tandem_Repeat 118156 118191 72 + . . scaffold471 WUBlastX LINE_RTE-X 119919 120299 31 + . . scaffold471 WUBlastX LINE_RTE-X 119997 120155 76 + . . scaffold471 WUBlastX LINE_RTE-X 120006 120215 59 + . . scaffold471 WUBlastX LINE_RTE-X 120006 120335 50 + . . scaffold471 GLEAN promoter 120206 121205 0.967951 + . ID=CGI_10027004; scaffold471 GLEAN mRNA 121206 125454 0.967951 + . ID=CGI_10027004; scaffold471 GLEAN mRNA 132577 133503 0.717751 - . ID=CGI_10027005; scaffold471 GLEAN promoter 133504 134503 0.717751 - . ID=CGI_10027005; scaffold471 TRF Tandem_Repeat 134385 134436 104 + . . scaffold471 TRF Tandem_Repeat 134677 134719 86 + . . scaffold471 GLEAN mRNA 136382 164578 0.99778 - . ID=CGI_10027006; scaffold471 TRF Tandem_Repeat 153842 154014 103 + . . scaffold471 TRF Tandem_Repeat 158163 158208 92 + . . scaffold471 TRF Tandem_Repeat 158328 158354 54 + . . scaffold471 TRF Tandem_Repeat 158422 158460 78 + . . scaffold471 TRF Tandem_Repeat 160238 160264 54 + . . scaffold471 TRF Tandem_Repeat 161579 161672 147 + . . scaffold471 GLEAN promoter 164579 165578 0.99778 - . ID=CGI_10027006; scaffold471 TRF Tandem_Repeat 177771 177818 96 + . . scaffold471 TRF Tandem_Repeat 178022 178149 89 + . . scaffold471 TRF Tandem_Repeat 184155 184195 66 + . . scaffold471 TRF Tandem_Repeat 184736 184783 96 + . . scaffold471 TRF Tandem_Repeat 187754 187800 94 + . . scaffold471 TRF Tandem_Repeat 190824 190849 52 + . . scaffold471 GLEAN promoter 192246 193245 0.137865 + . ID=CGI_10027007; scaffold471 GLEAN mRNA 193246 236257 0.137865 + . ID=CGI_10027007; scaffold471 TRF Tandem_Repeat 193689 193719 62 + . . scaffold471 TRF Tandem_Repeat 194779 194848 140 + . . scaffold471 TRF Tandem_Repeat 197136 197242 108 + . . scaffold471 WUBlastX LINE_CR1-L2 199505 199708 50 + . . scaffold471 WUBlastX LINE_CR1-L2 199672 199830 26 + . . scaffold471 TRF Tandem_Repeat 200677 200722 85 + . . scaffold471 TRF Tandem_Repeat 205685 205825 160 + . . scaffold471 TRF Tandem_Repeat 205685 205825 160 + . . scaffold471 TRF Tandem_Repeat 205685 205825 160 + . . scaffold471 TRF Tandem_Repeat 208346 208398 106 + . . scaffold471 TRF Tandem_Repeat 210016 210645 946 + . . scaffold471 TRF Tandem_Repeat 214278 214334 114 + . . scaffold471 TRF Tandem_Repeat 226582 226626 90 + . . scaffold471 TRF Tandem_Repeat 226800 226870 142 + . . scaffold471 TRF Tandem_Repeat 228818 228863 65 + . . scaffold471 TRF Tandem_Repeat 230956 230989 68 + . . scaffold471 TRF Tandem_Repeat 234039 234347 545 + . . scaffold471 TRF Tandem_Repeat 251396 251430 70 + . . scaffold471 WUBlastX LTR_Gypsy 254940 255113 41 - . . scaffold471 WUBlastX LTR_Gypsy 255430 255516 34 - . . scaffold471 WUBlastX LTR_Gypsy 255521 255919 91 - . . scaffold471 WUBlastX LTR_Gypsy 256200 256337 57 - . . scaffold471 WUBlastX LTR_Gypsy 256375 256581 84 - . . scaffold471 WUBlastX LTR_Gypsy 256408 256572 87 - . . scaffold471 WUBlastX LTR_Gypsy 256580 256708 67 - . . scaffold471 WUBlastX LTR_Gypsy 256662 257204 232 - . . scaffold471 WUBlastX LTR_Gypsy 256689 257306 212 - . . scaffold471 WUBlastX LINE_L1-Tx1 257567 261376 1928 + . . scaffold471 WUBlastX LTR_Gypsy-Cigr 266335 267045 170 + . . scaffold471 WUBlastX LTR_ERV1 266845 267144 34 + . . scaffold471 TRF Tandem_Repeat 267263 268388 1755 + . . scaffold471 TRF Tandem_Repeat 268412 268477 105 + . . scaffold471 TRF Tandem_Repeat 268412 268469 71 + . . scaffold471 TRF Tandem_Repeat 268415 268478 74 + . . scaffold471 TRF Tandem_Repeat 268419 268478 57 + . . scaffold471 WUBlastX LTR_Gypsy 268489 268857 57 + . . scaffold471 WUBlastX LTR_Gypsy 268546 268857 109 + . . scaffold471 WUBlastX LTR_Gypsy 268812 270011 229 + . . scaffold471 WUBlastX LTR_Gypsy-Cigr 269049 270011 591 + . . scaffold471 TRF Tandem_Repeat 270048 270117 54 + . . scaffold471 WUBlastX LTR_Gypsy 270351 270413 21 + . . scaffold471 TRF Tandem_Repeat 270865 270900 72 + . . scaffold471 TRF Tandem_Repeat 271289 271318 60 + . . scaffold471 TRF Tandem_Repeat 271434 271464 62 + . . scaffold471 TRF Tandem_Repeat 272519 272696 80 + . . scaffold471 WUBlastX LTR_Gypsy-Cigr 272733 274034 832 + . . scaffold471 WUBlastX LTR_Gypsy-Cigr 274000 274842 559 + . . scaffold471 WUBlastX LTR_Copia 274798 274914 28 + . . scaffold471 GLEAN promoter 276201 277200 0.944982 + . ID=CGI_10027008; scaffold471 GLEAN mRNA 277201 277689 0.944982 + . ID=CGI_10027008; scaffold471 TRF Tandem_Repeat 283072 284692 2143 + . . scaffold471 TRF Tandem_Repeat 286357 286435 68 + . . scaffold471 TRF Tandem_Repeat 286357 286435 68 + . . scaffold471 TRF Tandem_Repeat 287247 287282 63 + . . scaffold471 TRF Tandem_Repeat 290587 290676 135 + . . scaffold471 TRF Tandem_Repeat 308313 308365 106 + . . scaffold471 TRF Tandem_Repeat 309867 310358 556 + . . scaffold471 TRF Tandem_Repeat 310031 310358 375 + . . scaffold471 TRF Tandem_Repeat 310737 310774 60 + . . scaffold471 TRF Tandem_Repeat 314567 314620 81 + . . scaffold471 TRF Tandem_Repeat 318049 318100 104 + . . scaffold471 TRF Tandem_Repeat 319536 319619 161 + . . scaffold471 TRF Tandem_Repeat 320590 320716 116 + . . scaffold471 TRF Tandem_Repeat 320930 320973 88 + . . scaffold471 TRF Tandem_Repeat 321059 321084 52 + . . scaffold471 TRF Tandem_Repeat 322602 322683 146 + . . scaffold471 TRF Tandem_Repeat 322920 323029 71 + . . scaffold471 TRF Tandem_Repeat 322921 323016 104 + . . scaffold471 TRF Tandem_Repeat 323153 323191 69 + . . scaffold471 TRF Tandem_Repeat 323154 323204 57 + . . scaffold471 GLEAN promoter 324188 325187 0.636168 + . ID=CGI_10027009; scaffold471 WUBlastX DNA_IS4EU 324212 324640 21 + . . scaffold471 WUBlastX DNA_hAT-Tip100 324254 324484 54 + . . scaffold471 WUBlastX DNA_IS4EU 324254 324604 45 + . . scaffold471 WUBlastX DNA_IS4EU 324320 324526 52 + . . scaffold471 WUBlastX DNA_IS4EU 325164 326165 445 + . . scaffold471 GLEAN mRNA 325188 326174 0.636168 + . ID=CGI_10027009; scaffold471 WUBlastX DNA_IS4EU 325404 326162 469 + . . scaffold471 TRF Tandem_Repeat 335344 335392 80 + . . scaffold471 TRF Tandem_Repeat 336145 336199 67 + . . scaffold471 TRF Tandem_Repeat 341814 341868 92 + . . scaffold471 WUBlastX LTR_Gypsy 348909 349184 78 + . . scaffold471 WUBlastX LTR_Gypsy 349742 349840 24 + . . scaffold471 WUBlastX LTR_Gypsy 349788 350228 47 + . . scaffold471 WUBlastX LTR_Gypsy 349956 351860 671 + . . scaffold471 WUBlastX LTR_Gypsy 350892 351869 750 + . . scaffold471 WUBlastX LTR_Gypsy 350895 352694 406 + . . scaffold471 WUBlastX LTR_Gypsy-Cigr 352706 353035 234 + . . scaffold471 WUBlastX LTR_Gypsy 352742 353101 102 + . . scaffold471 WUBlastX LTR_Gypsy 353044 353370 68 + . . scaffold471 GLEAN promoter 353155 354154 0.62643 + . ID=CGI_10027010; scaffold471 GLEAN mRNA 354155 354532 0.62643 + . ID=CGI_10027010; scaffold471 TRF Tandem_Repeat 360086 360125 53 + . . scaffold471 WUBlastX DNA_TcMar-Tc2 360270 360674 49 + . . scaffold471 WUBlastX DNA_TcMar-Tc2 360327 360635 81 + . . scaffold471 WUBlastX DNA_TcMar-Tc2 360327 360500 85 + . . scaffold471 TRF Tandem_Repeat 361107 361207 159 + . . scaffold471 TRF Tandem_Repeat 362404 362431 56 + . . scaffold471 WUBlastX LINE_Penelope 367700 368209 152 + . . scaffold471 TRF Tandem_Repeat 374609 374675 116 + . . scaffold471 WUBlastX LTR_Gypsy 380552 381463 184 + . . scaffold471 WUBlastX LTR_Gypsy 380714 381157 272 + . . scaffold471 WUBlastX LTR_Gypsy 381133 381810 364 + . . scaffold471 WUBlastX LTR_Gypsy 381151 383055 258 + . . scaffold471 WUBlastX LTR_Gypsy 382207 383235 419 + . . scaffold471 WUBlastX LTR_Gypsy 382258 383424 189 + . . scaffold471 WUBlastX LTR_Gypsy 383505 383627 21 + . . scaffold471 WUBlastX DNA_Maverick 383565 383651 34 + . . scaffold471 WUBlastX LINE_L1 385017 385142 43 + . . scaffold471 WUBlastX LINE_L1-Tx1 386489 387721 367 + . . scaffold471 WUBlastX LINE_L1-Tx1 388168 388581 38 + . . scaffold471 WUBlastX LINE_L1-Tx1 388303 388617 143 + . . scaffold471 WUBlastX LINE_L1-Tx1 388569 388853 220 + . . scaffold471 WUBlastX LINE_L1-Tx1 388850 389419 331 + . . scaffold471 WUBlastX LINE_L1 388850 389659 187 + . . scaffold471 GLEAN promoter 419983 420982 0.507763 + . ID=CGI_10027011; scaffold471 GLEAN mRNA 420983 425915 0.507763 + . ID=CGI_10027011; scaffold471 GLEAN mRNA 421912 430345 0.9809 - . ID=CGI_10027012; scaffold471 TRF Tandem_Repeat 423636 424148 305 + . . scaffold471 TRF Tandem_Repeat 423982 424130 127 + . . scaffold471 TRF Tandem_Repeat 427099 428104 1104 + . . scaffold471 GLEAN promoter 430346 431345 0.9809 - . ID=CGI_10027012; scaffold471 TRF Tandem_Repeat 432867 433082 197 + . . scaffold471 GLEAN mRNA 442338 488954 0.745374 - . ID=CGI_10027013; scaffold471 TRF Tandem_Repeat 442915 443651 909 + . . scaffold471 TRF Tandem_Repeat 443242 443651 398 + . . scaffold471 GLEAN promoter 462683 463682 0.999038 + . ID=CGI_10027014; scaffold471 GLEAN mRNA 463683 466258 0.999038 + . ID=CGI_10027014; scaffold471 GLEAN promoter 468150 469149 0.499238 + . ID=CGI_10027015; scaffold471 GLEAN mRNA 469150 481224 0.499238 + . ID=CGI_10027015; scaffold471 TRF Tandem_Repeat 476660 476697 60 + . . scaffold471 TRF Tandem_Repeat 476835 477714 1253 + . . scaffold471 TRF Tandem_Repeat 478658 478804 73 + . . scaffold471 TRF Tandem_Repeat 478720 478868 90 + . . scaffold471 GLEAN promoter 480587 481586 0.295754 + . ID=CGI_10027016; scaffold471 GLEAN mRNA 481587 482527 0.295754 + . ID=CGI_10027016; scaffold471 GLEAN promoter 488955 489954 0.745374 - . ID=CGI_10027013; scaffold471 GLEAN mRNA 492283 495293 0.983469 - . ID=CGI_10027017; scaffold471 TRF Tandem_Repeat 494330 494379 91 + . . scaffold471 GLEAN promoter 495294 496293 0.983469 - . ID=CGI_10027017; scaffold471 GLEAN promoter 496682 497681 0.753966 + . ID=CGI_10027018; scaffold471 GLEAN mRNA 497682 500063 0.753966 + . ID=CGI_10027018; scaffold471 TRF Tandem_Repeat 499644 499783 77 + . . scaffold471 TRF Tandem_Repeat 500618 500702 149 + . . scaffold471 TRF Tandem_Repeat 501434 501593 151 + . . scaffold471 TRF Tandem_Repeat 501436 501593 161 + . . scaffold471 WUBlastX LTR_DIRS 501921 502196 58 + . . scaffold471 WUBlastX LTR_DIRS 502026 502196 92 + . . scaffold471 TRF Tandem_Repeat 502366 502405 62 + . . scaffold471 WUBlastX LTR_Ngaro 502957 503289 54 - . . scaffold471 WUBlastX LTR_Ngaro 503008 503295 160 - . . scaffold471 WUBlastX LTR_Ngaro 503279 503935 167 - . . scaffold471 TRF Tandem_Repeat 503973 504028 71 + . . scaffold471 TRF Tandem_Repeat 503977 504031 65 + . . scaffold471 WUBlastX LTR_Ngaro 505125 505436 203 - . . scaffold471 WUBlastX LTR_Ngaro 505436 505933 460 - . . scaffold471 WUBlastX LTR_Ngaro 505872 506159 114 - . . scaffold471 WUBlastX LTR_Ngaro 506005 506613 302 - . . scaffold471 WUBlastX LTR_Ngaro 506155 506613 347 - . . scaffold471 WUBlastX LTR_Ngaro 506878 507372 76 - . . scaffold471 WUBlastX LTR_Ngaro 506974 507438 113 - . . scaffold471 TRF Tandem_Repeat 508147 508378 337 + . . scaffold471 WUBlastX LTR_DIRS 509481 509774 83 + . . scaffold471 WUBlastX LTR_Gypsy 509733 509861 21 + . . scaffold471 WUBlastX LTR_DIRS 509941 510276 23 + . . scaffold471 WUBlastX LTR_DIRS 510046 510249 77 + . . scaffold471 WUBlastX LTR_DIRS 510251 510811 364 + . . scaffold471 WUBlastX LTR_DIRS 510795 510980 54 + . . scaffold471 WUBlastX LTR_DIRS 510846 511580 406 + . . scaffold471 WUBlastX LTR_DIRS 511594 511977 170 + . . scaffold471 WUBlastX LTR_DIRS 511985 512773 293 + . . scaffold471 WUBlastX LTR_Lenti 513270 513422 29 + . . scaffold471 WUBlastX LTR_Copia 513297 513485 83 + . . scaffold471 WUBlastX LTR_Copia 513485 513769 118 + . . scaffold471 WUBlastX LTR_Copia 513731 515128 780 + . . scaffold471 WUBlastX LTR_Copia 513776 514960 803 + . . scaffold471 WUBlastX LTR_Copia 515139 516779 202 + . . scaffold471 WUBlastX LTR_Copia 515388 516833 849 + . . scaffold471 TRF Tandem_Repeat 572896 572920 50 + . . scaffold471 TRF Tandem_Repeat 586471 586517 94 + . . scaffold471 WUBlastX LTR_DIRS? 587275 587400 21 + . . scaffold471 WUBlastX LTR_DIRS 587308 587400 38 + . . scaffold471 WUBlastX LTR_DIRS? 587436 587723 203 + . . scaffold471 TRF Tandem_Repeat 589234 589503 83 + . . scaffold471 TRF Tandem_Repeat 589234 589504 176 + . . scaffold471 TRF Tandem_Repeat 589277 589464 155 + . . scaffold471 TRF Tandem_Repeat 589388 589504 89 + . . scaffold471 TRF Tandem_Repeat 600397 600442 83 + . . scaffold471 WUBlastX LINE_L2 615659 616156 61 + . . scaffold471 WUBlastX LINE_L2 615782 616231 126 + . . scaffold471 WUBlastX LINE_L2 615809 616189 181 + . . scaffold471 WUBlastX LINE_L2 615818 616324 96 + . . scaffold471 WUBlastX DNA_TcMar-Marin 624209 624436 50 - . . scaffold471 WUBlastX DNA_TcMar-Marin 624266 624442 56 - . . scaffold471 WUBlastX DNA_TcMar-Marin 624302 624427 81 - . . scaffold471 WUBlastX DNA_TcMar-Marin 624311 624475 53 - . . scaffold471 WUBlastX LINE_RTE-BovB 633671 633838 25 - . . scaffold471 WUBlastX LINE_RTE-BovB 633826 634551 311 - . . scaffold471 TRF Tandem_Repeat 652196 652257 67 + . . scaffold471 TRF Tandem_Repeat 652196 652245 82 + . . scaffold471 TRF Tandem_Repeat 665597 665621 50 + . . scaffold471 TRF Tandem_Repeat 666379 666421 65 + . . scaffold471 TRF Tandem_Repeat 671623 672445 1352 + . . scaffold471 TRF Tandem_Repeat 672650 672695 74 + . . scaffold471 TRF Tandem_Repeat 682560 683356 1452 + . . scaffold471 TRF Tandem_Repeat 683365 683464 128 + . . scaffold471 TRF Tandem_Repeat 683370 683463 116 + . . scaffold471 TRF Tandem_Repeat 684450 684475 52 + . . scaffold471 TRF Tandem_Repeat 686748 687864 1460 + . . scaffold471 WUBlastX DNA 701342 701398 28 - . . scaffold471 WUBlastX DNA_Zator 701389 701640 104 - . . scaffold471 WUBlastX DNA 701395 702450 75 - . . scaffold471 WUBlastX DNA_Zator 701639 701791 98 - . . scaffold471 WUBlastX DNA 702815 703171 34 - . . scaffold471 TRF Tandem_Repeat 704220 704271 104 + . . scaffold471 TRF Tandem_Repeat 709846 710587 684 + . . scaffold471 WUBlastX LTR_Gypsy 719596 719628 23 - . . scaffold471 WUBlastX LTR_Gypsy 719645 719782 80 - . . scaffold471 WUBlastX LTR_Gypsy 719782 720069 156 - . . scaffold471 WUBlastX LTR_Gypsy 719782 720153 85 - . . scaffold471 TRF Tandem_Repeat 725319 725482 166 + . . scaffold471 WUBlastX LINE_Penelope 728457 729047 63 + . . scaffold471 WUBlastX DNA_TcMar-Tc1 743697 743804 21 - . . scaffold471 WUBlastX DNA_TcMar-Tc1 743740 744105 59 - . . scaffold471 WUBlastX DNA_TcMar-Tc1 743833 744057 60 - . . scaffold471 WUBlastX DNA_TcMar-Tc1 744209 744391 30 - . . scaffold471 WUBlastX DNA_TcMar-Tc1 744260 744442 22 - . . scaffold471 WUBlastX DNA_TcMar-Tc1 745033 745146 22 - . . scaffold471 WUBlastX DNA_TcMar-Tc1 745057 745155 32 - . . scaffold471 WUBlastX LTR_DIRS 745744 745863 32 - . . scaffold471 WUBlastX LTR_DIRS 745842 745976 37 - . . scaffold471 WUBlastX LTR_DIRS 745872 746009 27 - . . scaffold471 WUBlastX LTR_DIRS 746024 746878 118 - . . scaffold471 WUBlastX LTR_DIRS 746476 746970 58 - . . scaffold471 WUBlastX LTR_DIRS 746958 747152 50 - . . scaffold471 WUBlastX LTR_DIRS 747003 747167 79 - . . scaffold471 WUBlastX LTR_DIRS 747036 747248 68 - . . scaffold471 WUBlastX LTR_DIRS 756254 756595 67 - . . scaffold471 WUBlastX LTR_DIRS 756269 756889 50 - . . scaffold471 WUBlastX LTR_DIRS 756821 757285 56 - . . scaffold471 WUBlastX LTR_DIRS 757272 757415 92 - . . scaffold471 WUBlastX LTR_DIRS 757272 757475 91 - . . scaffold471 WUBlastX LINE_L2 762988 763704 193 + . . scaffold471 WUBlastX LINE_L1 763270 763743 247 + . . scaffold471 WUBlastX LINE_CR1 763729 764319 62 + . . scaffold471 WUBlastX LINE_RTE-X 763870 767283 905 + . . scaffold471 WUBlastX LINE_RTE-X 764974 767292 1022 + . . scaffold471 TRF Tandem_Repeat 767451 767476 52 + . . scaffold471 GLEAN mRNA 769892 770062 0.946165 - . ID=CGI_10027019; scaffold471 GLEAN promoter 770063 771062 0.946165 - . ID=CGI_10027019; scaffold471 WUBlastX LINE_L1 771179 771526 24 - . . scaffold471 WUBlastX LINE_L1-Tx1 771209 771460 85 - . . scaffold471 TRF Tandem_Repeat 805906 806047 83 + . . scaffold471 TRF Tandem_Repeat 807719 807750 55 + . . scaffold471 TRF Tandem_Repeat 818803 818854 95 + . . scaffold471 TRF Tandem_Repeat 820219 820303 149 + . . scaffold471 TRF Tandem_Repeat 821018 821154 149 + . . scaffold471 TRF Tandem_Repeat 821018 821154 162 + . . scaffold471 TRF Tandem_Repeat 821018 821154 162 + . . scaffold471 TRF Tandem_Repeat 822119 822216 196 + . . scaffold471 WUBlastX LINE_L2 822222 822557 22 + . . scaffold471 WUBlastX LINE_L2 822680 822952 28 + . . scaffold471 WUBlastX LINE_L2 822898 823260 68 + . . scaffold471 WUBlastX LINE_L2 823263 824123 198 + . . scaffold471 WUBlastX LINE_L2 824115 824204 42 + . . scaffold471 WUBlastX LINE_L2 824145 824225 30 + . . scaffold471 GLEAN promoter 824295 825294 0.998981 + . ID=CGI_10027020; scaffold471 GLEAN mRNA 825295 826200 0.998981 + . ID=CGI_10027020; scaffold471 GLEAN mRNA 834460 846663 0.680395 - . ID=CGI_10027021; scaffold471 TRF Tandem_Repeat 840011 840104 72 + . . scaffold471 TRF Tandem_Repeat 840016 840106 55 + . . scaffold471 GLEAN promoter 846664 847663 0.680395 - . ID=CGI_10027021; scaffold471 GLEAN promoter 849293 850292 0.999795 + . ID=CGI_10027022; scaffold471 GLEAN mRNA 850293 854760 0.999795 + . ID=CGI_10027022; scaffold471 TRF Tandem_Repeat 853037 853066 51 + . . scaffold471 GLEAN promoter 854218 855217 0.407555 + . ID=CGI_10027023; scaffold471 GLEAN mRNA 855218 868105 0.407555 + . ID=CGI_10027023; scaffold471 GLEAN mRNA 857975 864000 0.998817 - . ID=CGI_10027024; scaffold471 GLEAN promoter 864001 865000 0.998817 - . ID=CGI_10027024; scaffold471 GLEAN mRNA 869396 870686 1 - . ID=CGI_10027025; scaffold471 GLEAN promoter 870687 871686 1 - . ID=CGI_10027025; scaffold471 GLEAN mRNA 884623 885691 0.647878 - . ID=CGI_10027026; scaffold471 GLEAN promoter 885692 886691 0.647878 - . ID=CGI_10027026; scaffold471 GLEAN mRNA 888468 890015 1 - . ID=CGI_10027027; scaffold471 GLEAN promoter 890016 891015 1 - . ID=CGI_10027027; scaffold471 TRF Tandem_Repeat 894471 894519 80 + . . scaffold471 GLEAN mRNA 900045 946913 0.362984 - . ID=CGI_10027028; scaffold471 WUBlastX LINE_L2 910964 911542 22 - . . scaffold471 TRF Tandem_Repeat 914301 914365 55 + . . scaffold471 TRF Tandem_Repeat 914303 914365 64 + . . scaffold471 GLEAN promoter 916566 917565 0.816902 + . ID=CGI_10027029; scaffold471 TRF Tandem_Repeat 917326 917358 66 + . . scaffold471 GLEAN mRNA 917566 925257 0.816902 + . ID=CGI_10027029; scaffold471 TRF Tandem_Repeat 926919 926948 51 + . . scaffold471 TRF Tandem_Repeat 942406 942596 213 + . . scaffold471 TRF Tandem_Repeat 944492 945492 1360 + . . scaffold471 TRF Tandem_Repeat 944492 945496 1298 + . . scaffold471 TRF Tandem_Repeat 944509 945496 1057 + . . scaffold471 TRF Tandem_Repeat 944509 945492 1276 + . . scaffold471 GLEAN promoter 946914 947913 0.362984 - . ID=CGI_10027028; scaffold471 GLEAN promoter 948582 949581 0.963637 + . ID=CGI_10027030; scaffold471 GLEAN mRNA 949582 955621 0.963637 + . ID=CGI_10027030; scaffold471 GLEAN mRNA 961845 980047 0.984594 - . ID=CGI_10027031; scaffold471 GLEAN promoter 966920 967919 0.935502 + . ID=CGI_10027032; scaffold471 GLEAN mRNA 967920 989777 0.935502 + . ID=CGI_10027032; scaffold471 TRF Tandem_Repeat 972197 972240 88 + . . scaffold471 TRF Tandem_Repeat 973746 973805 86 + . . scaffold471 TRF Tandem_Repeat 975553 975614 124 + . . scaffold471 GLEAN promoter 980048 981047 0.984594 - . ID=CGI_10027031; scaffold471 TRF Tandem_Repeat 981311 981344 68 + . . scaffold471 TRF Tandem_Repeat 982977 983001 50 + . . scaffold471 TRF Tandem_Repeat 1001876 1001964 144 + . . scaffold471 TRF Tandem_Repeat 1011898 1011943 92 + . . scaffold471 TRF Tandem_Repeat 1012860 1012954 118 + . . scaffold471 TRF Tandem_Repeat 1012877 1012968 73 + . . scaffold471 TRF Tandem_Repeat 1015278 1015348 142 + . . scaffold471 TRF Tandem_Repeat 1016479 1016507 58 + . . scaffold471 TRF Tandem_Repeat 1024056 1024116 59 + . . scaffold471 TRF Tandem_Repeat 1033565 1033667 86 + . . scaffold471 TRF Tandem_Repeat 1041844 1041875 64 + . . scaffold471 WUBlastX LINE_RTE-X 1049777 1050577 249 - . . scaffold471 TRF Tandem_Repeat 1070306 1070336 53 + . . scaffold471 TRF Tandem_Repeat 1073618 1073655 60 + . . scaffold471 TRF Tandem_Repeat 1077704 1078661 1363 + . . scaffold471 GLEAN mRNA 1083648 1086053 0.836238 - . ID=CGI_10027033; scaffold471 GLEAN promoter 1086054 1087053 0.836238 - . ID=CGI_10027033; scaffold471 TRF Tandem_Repeat 1087205 1087242 51 + . . scaffold471 WUBlastX LINE_RTE-X 1100299 1100547 23 + . . scaffold471 WUBlastX LINE_RTE-X 1100302 1100481 30 + . . scaffold471 WUBlastX LINE_RTE-BovB 1100302 1100451 82 + . . scaffold471 WUBlastX LINE_RTE-X 1100608 1101048 110 - . . scaffold471 WUBlastX LINE_RTE-X 1101103 1101315 74 + . . scaffold471 GLEAN promoter 1112277 1113276 0.999642 + . ID=CGI_10027034; scaffold471 GLEAN mRNA 1113277 1115367 0.999642 + . ID=CGI_10027034; scaffold471 TRF Tandem_Repeat 1118548 1118596 98 + . . scaffold471 GLEAN promoter 1119881 1120880 1 + . ID=CGI_10027035; scaffold471 GLEAN mRNA 1120881 1125845 1 + . ID=CGI_10027035; scaffold471 TRF Tandem_Repeat 1122261 1122297 74 + . . scaffold471 TRF Tandem_Repeat 1142554 1142581 56 + . . scaffold471 TRF Tandem_Repeat 1142990 1143031 56 + . . scaffold471 GLEAN mRNA 1147348 1181560 0.79192 - . ID=CGI_10027036; scaffold471 TRF Tandem_Repeat 1172762 1173108 490 + . . scaffold471 GLEAN promoter 1181561 1182560 0.79192 - . ID=CGI_10027036; scaffold471 GLEAN promoter 1182566 1183565 1 + . ID=CGI_10027037; scaffold471 GLEAN mRNA 1183566 1192129 1 + . ID=CGI_10027037; scaffold471 TRF Tandem_Repeat 1195204 1195235 64 + . . scaffold471 WUBlastX LINE_Penelope 1210303 1210455 67 + . . scaffold471 WUBlastX LINE_RTE-X 1210878 1211069 84 + . . scaffold471 WUBlastX LINE_RTE-X 1211065 1211211 49 + . . scaffold471 WUBlastX LINE_RTE-X 1213026 1213250 64 - . . scaffold471 WUBlastX LINE_RTE-X 1213261 1213545 126 - . . scaffold471 TRF Tandem_Repeat 1215600 1215625 52 + . . scaffold471 TRF Tandem_Repeat 1215638 1215687 100 + . . scaffold471 TRF Tandem_Repeat 1217990 1218017 56 + . . scaffold471 WUBlastX LTR_Gypsy 1223252 1223704 37 + . . scaffold471 WUBlastX LTR_Gypsy 1223665 1223991 47 + . . scaffold471 WUBlastX LTR_Gypsy 1223782 1224813 389 + . . scaffold471 WUBlastX LTR_Gypsy 1224022 1224858 400 + . . scaffold471 TRF Tandem_Repeat 1225246 1225340 162 + . . scaffold471 TRF Tandem_Repeat 1225246 1225342 162 + . . scaffold471 GLEAN mRNA 1226022 1238861 0.423333 - . ID=CGI_10027038; scaffold471 WUBlastX DNA_MuDR 1229012 1230214 29 - . . scaffold471 WUBlastX DNA_MuDR 1229012 1229992 43 - . . scaffold471 WUBlastX DNA_MuDR 1229420 1229791 73 - . . scaffold471 WUBlastX DNA_MuDR 1229420 1229671 83 - . . scaffold471 TRF Tandem_Repeat 1234712 1234764 97 + . . scaffold471 GLEAN promoter 1238862 1239861 0.423333 - . ID=CGI_10027038; scaffold471 TRF Tandem_Repeat 1239510 1239579 131 + . . scaffold471 TRF Tandem_Repeat 1240084 1240135 104 + . . scaffold471 TRF Tandem_Repeat 1241690 1241902 214 + . . scaffold471 TRF Tandem_Repeat 1241722 1241903 123 + . . scaffold471 TRF Tandem_Repeat 1241722 1241902 271 + . . scaffold471 GLEAN mRNA 1246022 1262836 1 - . ID=CGI_10027039; scaffold471 TRF Tandem_Repeat 1247361 1247512 121 + . . scaffold471 TRF Tandem_Repeat 1247821 1247888 109 + . . scaffold471 TRF Tandem_Repeat 1262729 1262787 73 + . . scaffold471 TRF Tandem_Repeat 1262753 1262788 63 + . . scaffold471 GLEAN promoter 1262837 1263836 1 - . ID=CGI_10027039; scaffold471 TRF Tandem_Repeat 1269747 1269844 92 + . . scaffold471 GLEAN mRNA 1271642 1272205 0.768633 - . ID=CGI_10027040; scaffold471 GLEAN promoter 1272206 1273205 0.768633 - . ID=CGI_10027040; scaffold471 TRF Tandem_Repeat 1278414 1278452 51 + . . scaffold471 WUBlastX LINE_RTE-BovB 1280693 1281148 97 + . . scaffold472 GLEAN promoter 6858 7857 0.994879 + . ID=CGI_10018493; scaffold472 GLEAN mRNA 7858 13500 0.994879 + . ID=CGI_10018493; scaffold472 TRF Tandem_Repeat 20029 20074 58 + . . scaffold472 GLEAN promoter 27461 28460 0.999986 + . ID=CGI_10018494; scaffold472 GLEAN mRNA 28461 32159 0.999986 + . ID=CGI_10018494; scaffold472 GLEAN promoter 32468 33467 0.999986 + . ID=CGI_10018495; scaffold472 GLEAN mRNA 33468 43012 0.999986 + . ID=CGI_10018495; scaffold472 GLEAN mRNA 37190 38401 0.999661 - . ID=CGI_10018496; scaffold472 GLEAN promoter 38402 39401 0.999661 - . ID=CGI_10018496; scaffold472 GLEAN mRNA 53608 53952 0.59015 - . ID=CGI_10018497; scaffold472 GLEAN promoter 53953 54952 0.59015 - . ID=CGI_10018497; scaffold472 TRF Tandem_Repeat 75160 75217 71 + . . scaffold472 TRF Tandem_Repeat 75167 75218 68 + . . scaffold472 TRF Tandem_Repeat 76164 76194 62 + . . scaffold472 TRF Tandem_Repeat 76253 76289 56 + . . scaffold472 WUBlastX LINE_R2-Hero 76755 76883 61 + . . scaffold472 WUBlastX LINE_R2-Hero 76819 76998 58 + . . scaffold472 WUBlastX LINE_R2-Hero 77295 78341 30 + . . scaffold472 WUBlastX LINE_R2-Hero 77802 78383 64 + . . scaffold472 GLEAN promoter 83259 84258 1 + . ID=CGI_10018498; scaffold472 GLEAN mRNA 84259 90809 1 + . ID=CGI_10018498; scaffold472 GLEAN mRNA 86795 100489 0.777566 - . ID=CGI_10018499; scaffold472 TRF Tandem_Repeat 91507 91799 188 + . . scaffold472 TRF Tandem_Repeat 91509 91776 256 + . . scaffold472 TRF Tandem_Repeat 96836 96863 56 + . . scaffold472 GLEAN promoter 100490 101489 0.777566 - . ID=CGI_10018499; scaffold472 GLEAN mRNA 102969 107404 1 - . ID=CGI_10018500; scaffold472 TRF Tandem_Repeat 103421 103482 124 + . . scaffold472 TRF Tandem_Repeat 103615 103646 55 + . . scaffold472 GLEAN promoter 107405 108404 1 - . ID=CGI_10018500; scaffold472 GLEAN mRNA 107474 113105 1 - . ID=CGI_10018501; scaffold472 GLEAN promoter 113106 114105 1 - . ID=CGI_10018501; scaffold472 GLEAN mRNA 114255 119658 0.486844 - . ID=CGI_10018502; scaffold472 GLEAN promoter 119659 120658 0.486844 - . ID=CGI_10018502; scaffold472 WUBlastX LINE_RTE-X 120618 120737 33 + . . scaffold472 WUBlastX LINE_RTE-X 120642 121496 277 + . . scaffold472 GLEAN promoter 122170 123169 0.999481 + . ID=CGI_10018503; scaffold472 GLEAN mRNA 123170 124600 0.999481 + . ID=CGI_10018503; scaffold472 GLEAN promoter 123946 124945 0.811287 + . ID=CGI_10018504; scaffold472 GLEAN mRNA 124946 128199 0.811287 + . ID=CGI_10018504; scaffold472 GLEAN promoter 127643 128642 0.990929 + . ID=CGI_10018505; scaffold472 GLEAN mRNA 128643 133389 0.990929 + . ID=CGI_10018505; scaffold472 GLEAN promoter 132929 133928 0.991254 + . ID=CGI_10018506; scaffold472 GLEAN mRNA 133929 136303 0.991254 + . ID=CGI_10018506; scaffold472 GLEAN mRNA 138281 151674 0.995583 - . ID=CGI_10018507; scaffold472 TRF Tandem_Repeat 143748 143793 92 + . . scaffold472 TRF Tandem_Repeat 145568 145607 80 + . . scaffold472 GLEAN promoter 151675 152674 0.995583 - . ID=CGI_10018507; scaffold472 TRF Tandem_Repeat 154320 154509 202 + . . scaffold472 WUBlastX LINE_RTE-X 157383 159188 692 - . . scaffold472 TRF Tandem_Repeat 159194 159465 241 + . . scaffold472 GLEAN promoter 166232 167231 0.430756 + . ID=CGI_10018508; scaffold472 GLEAN mRNA 167232 201650 0.430756 + . ID=CGI_10018508; scaffold472 TRF Tandem_Repeat 171530 171563 59 + . . scaffold472 TRF Tandem_Repeat 177326 177390 130 + . . scaffold472 TRF Tandem_Repeat 190796 190842 85 + . . scaffold472 GLEAN mRNA 192594 197412 1 - . ID=CGI_10018509; scaffold472 GLEAN promoter 197413 198412 1 - . ID=CGI_10018509; scaffold472 TRF Tandem_Repeat 204977 205011 54 + . . scaffold472 TRF Tandem_Repeat 206331 206741 560 + . . scaffold472 TRF Tandem_Repeat 206398 206628 153 + . . scaffold472 TRF Tandem_Repeat 206441 206662 134 + . . scaffold472 TRF Tandem_Repeat 209206 209248 86 + . . scaffold472 GLEAN promoter 210868 211867 1 + . ID=CGI_10018510; scaffold472 GLEAN mRNA 211868 224060 1 + . ID=CGI_10018510; scaffold472 TRF Tandem_Repeat 212006 212391 523 + . . scaffold472 GLEAN promoter 225511 226510 0.832915 + . ID=CGI_10018511; scaffold472 GLEAN mRNA 226511 244468 0.832915 + . ID=CGI_10018511; scaffold472 TRF Tandem_Repeat 230505 230543 69 + . . scaffold472 TRF Tandem_Repeat 235356 235432 154 + . . scaffold472 TRF Tandem_Repeat 245628 245673 92 + . . scaffold472 TRF Tandem_Repeat 247911 247967 105 + . . scaffold472 TRF Tandem_Repeat 251855 251901 94 + . . scaffold472 TRF Tandem_Repeat 253526 253570 90 + . . scaffold472 GLEAN promoter 260028 261027 0.499853 + . ID=CGI_10018512; scaffold472 GLEAN mRNA 261028 261849 0.499853 + . ID=CGI_10018512; scaffold472 TRF Tandem_Repeat 268467 268513 67 + . . scaffold472 GLEAN mRNA 275214 275537 1 - . ID=CGI_10018513; scaffold472 GLEAN promoter 275538 276537 1 - . ID=CGI_10018513; scaffold472 TRF Tandem_Repeat 275748 275992 337 + . . scaffold472 GLEAN mRNA 276570 284830 0.544848 - . ID=CGI_10018514; scaffold472 GLEAN promoter 284831 285830 0.544848 - . ID=CGI_10018514; scaffold472 TRF Tandem_Repeat 286175 286217 86 + . . scaffold472 TRF Tandem_Repeat 286591 286660 140 + . . scaffold472 TRF Tandem_Repeat 296041 296073 66 + . . scaffold472 TRF Tandem_Repeat 296130 296169 71 + . . scaffold472 TRF Tandem_Repeat 297945 298033 97 + . . scaffold472 TRF Tandem_Repeat 297946 298028 85 + . . scaffold472 TRF Tandem_Repeat 297961 298032 63 + . . scaffold472 TRF Tandem_Repeat 299783 300245 295 + . . scaffold472 TRF Tandem_Repeat 299783 300245 331 + . . scaffold472 TRF Tandem_Repeat 299857 300245 193 + . . scaffold472 TRF Tandem_Repeat 299866 300002 133 + . . scaffold472 TRF Tandem_Repeat 300283 300383 112 + . . scaffold472 TRF Tandem_Repeat 309222 309529 129 + . . scaffold472 TRF Tandem_Repeat 309233 309656 335 + . . scaffold472 TRF Tandem_Repeat 309237 309635 271 + . . scaffold472 TRF Tandem_Repeat 309568 309689 103 + . . scaffold472 TRF Tandem_Repeat 315329 315421 186 + . . scaffold472 GLEAN promoter 319208 320207 0.889859 + . ID=CGI_10018515; scaffold472 GLEAN mRNA 320208 322137 0.889859 + . ID=CGI_10018515; scaffold472 GLEAN promoter 322914 323913 0.999594 + . ID=CGI_10018516; scaffold472 GLEAN mRNA 323914 348779 0.999594 + . ID=CGI_10018516; scaffold472 TRF Tandem_Repeat 336997 337057 122 + . . scaffold472 GLEAN promoter 348971 349970 1 + . ID=CGI_10018517; scaffold472 GLEAN mRNA 349971 358709 1 + . ID=CGI_10018517; scaffold472 TRF Tandem_Repeat 360037 360093 114 + . . scaffold472 TRF Tandem_Repeat 360403 360442 80 + . . scaffold472 TRF Tandem_Repeat 360740 360791 104 + . . scaffold472 TRF Tandem_Repeat 364397 364442 92 + . . scaffold472 TRF Tandem_Repeat 365964 366519 288 + . . scaffold472 TRF Tandem_Repeat 366153 366583 150 + . . scaffold472 TRF Tandem_Repeat 366153 366311 59 + . . scaffold472 TRF Tandem_Repeat 366203 366311 77 + . . scaffold472 TRF Tandem_Repeat 366386 366583 81 + . . scaffold472 WUBlastX LINE_RTE-X 366885 367151 29 + . . scaffold472 WUBlastX LINE_RTE-X 366948 367250 48 + . . scaffold472 WUBlastX LINE_RTE-X 368259 368369 37 - . . scaffold472 WUBlastX LINE_RTE-X 368362 368466 34 - . . scaffold472 WUBlastX LINE_RTE-X 368520 368624 29 - . . scaffold472 WUBlastX LINE_RTE-X 369097 369237 20 - . . scaffold472 WUBlastX LINE_RTE-X 369499 369711 46 + . . scaffold472 WUBlastX LINE_RTE-X 369589 369801 43 + . . scaffold472 TRF Tandem_Repeat 370629 370813 212 + . . scaffold472 TRF Tandem_Repeat 371048 371085 76 + . . scaffold472 TRF Tandem_Repeat 371807 372075 538 + . . scaffold472 TRF Tandem_Repeat 372802 373306 744 + . . scaffold472 TRF Tandem_Repeat 373322 373530 283 + . . scaffold472 WUBlastX LINE_RTE-X 374767 375162 77 - . . scaffold472 WUBlastX LINE_RTE-X 374830 375171 96 - . . scaffold472 WUBlastX LINE_RTE-X 374905 375690 185 - . . scaffold472 WUBlastX LINE_RTE-X 375118 375810 247 - . . scaffold472 WUBlastX LINE_Jockey 375737 376207 26 - . . scaffold472 GLEAN promoter 378137 379136 0.382571 + . ID=CGI_10018518; scaffold472 TRF Tandem_Repeat 378928 379005 147 + . . scaffold472 GLEAN mRNA 379137 382415 0.382571 + . ID=CGI_10018518; scaffold472 TRF Tandem_Repeat 380009 380510 461 + . . scaffold472 TRF Tandem_Repeat 380102 380523 553 + . . scaffold472 TRF Tandem_Repeat 380102 380510 517 + . . scaffold472 TRF Tandem_Repeat 382211 382326 196 + . . scaffold472 TRF Tandem_Repeat 383454 383497 88 + . . scaffold472 TRF Tandem_Repeat 384492 384824 341 + . . scaffold472 TRF Tandem_Repeat 384505 384674 82 + . . scaffold472 GLEAN mRNA 389545 407945 1 - . ID=CGI_10018519; scaffold472 TRF Tandem_Repeat 390886 391272 238 + . . scaffold472 TRF Tandem_Repeat 390952 391272 363 + . . scaffold472 TRF Tandem_Repeat 390954 391163 114 + . . scaffold472 TRF Tandem_Repeat 395504 395958 529 + . . scaffold472 TRF Tandem_Repeat 395529 395958 430 + . . scaffold472 TRF Tandem_Repeat 404550 404604 65 + . . scaffold472 GLEAN promoter 407946 408945 1 - . ID=CGI_10018519; scaffold472 GLEAN promoter 409927 410926 1 + . ID=CGI_10018520; scaffold472 GLEAN mRNA 410927 413643 1 + . ID=CGI_10018520; scaffold472 GLEAN promoter 413933 414932 1 + . ID=CGI_10018521; scaffold472 GLEAN mRNA 414933 422014 1 + . ID=CGI_10018521; scaffold472 GLEAN mRNA 426321 446154 0.590247 - . ID=CGI_10018522; scaffold472 GLEAN promoter 446155 447154 0.590247 - . ID=CGI_10018522; scaffold472 TRF Tandem_Repeat 450165 450208 88 + . . scaffold472 TRF Tandem_Repeat 451223 451260 76 + . . scaffold472 TRF Tandem_Repeat 457842 457876 61 + . . scaffold472 WUBlastX LINE_L1-Tx1 474601 474990 43 + . . scaffold472 WUBlastX LINE_L1-Tx1 474932 475165 21 + . . scaffold472 WUBlastX LINE_L1-Tx1 475176 475301 37 + . . scaffold472 TRF Tandem_Repeat 475568 475599 55 + . . scaffold472 TRF Tandem_Repeat 484498 484534 56 + . . scaffold472 TRF Tandem_Repeat 484976 485125 273 + . . scaffold472 GLEAN promoter 500018 501017 0.989841 + . ID=CGI_10018523; scaffold472 GLEAN mRNA 501018 514300 0.989841 + . ID=CGI_10018523; scaffold472 TRF Tandem_Repeat 510171 510214 88 + . . scaffold472 TRF Tandem_Repeat 538408 538433 52 + . . scaffold472 GLEAN promoter 543781 544780 0.777732 + . ID=CGI_10018524; scaffold472 GLEAN mRNA 544781 545431 0.777732 + . ID=CGI_10018524; scaffold472 TRF Tandem_Repeat 550093 550124 64 + . . scaffold472 TRF Tandem_Repeat 559954 559995 66 + . . scaffold473 TRF Tandem_Repeat 1618 1741 97 + . . scaffold473 TRF Tandem_Repeat 1623 1717 111 + . . scaffold473 GLEAN promoter 2629 3628 0.999372 + . ID=CGI_10010577; scaffold473 GLEAN mRNA 3629 3859 0.999372 + . ID=CGI_10010577; scaffold473 GLEAN promoter 4048 5047 0.999999 + . ID=CGI_10010578; scaffold473 TRF Tandem_Repeat 4480 4527 96 + . . scaffold473 TRF Tandem_Repeat 4688 4736 89 + . . scaffold473 GLEAN mRNA 5048 16699 0.999999 + . ID=CGI_10010578; scaffold473 TRF Tandem_Repeat 5384 5535 154 + . . scaffold473 TRF Tandem_Repeat 7817 7875 82 + . . scaffold473 WUBlastX LTR_Gypsy 24741 25022 47 + . . scaffold473 WUBlastX LTR_Gypsy 24798 25013 79 + . . scaffold473 WUBlastX LTR_Gypsy 24986 25195 126 + . . scaffold473 WUBlastX LTR_Gypsy 25019 25210 190 + . . scaffold473 WUBlastX LTR_Gypsy 25028 25540 40 + . . scaffold473 WUBlastX LTR_Gypsy 25216 25389 87 + . . scaffold473 WUBlastX LTR_Gypsy 25216 25362 115 + . . scaffold473 WUBlastX LTR_Gypsy 25356 25460 74 + . . scaffold473 WUBlastX LTR_Gypsy 26038 26370 55 + . . scaffold473 WUBlastX LTR_Gypsy 26146 26367 118 + . . scaffold473 WUBlastX LTR_Gypsy 26384 27499 304 + . . scaffold473 WUBlastX LTR_Gypsy 26567 27499 523 + . . scaffold473 WUBlastX LTR_Gypsy 26573 27700 269 + . . scaffold473 WUBlastX LTR_Gypsy 27463 27756 49 + . . scaffold473 WUBlastX DNA_TcMar-Tc1 28006 28800 265 - . . scaffold473 WUBlastX DNA_TcMar-Tc1 29712 29852 25 - . . scaffold473 TRF Tandem_Repeat 32515 32670 188 + . . scaffold473 TRF Tandem_Repeat 46569 46602 68 + . . scaffold473 WUBlastX LTR_Gypsy-Troyk 53831 54016 57 - . . scaffold473 WUBlastX LTR_Gypsy-Troyk 53861 53983 68 - . . scaffold473 WUBlastX LTR_Gypsy-Troyk 53992 55905 1576 - . . scaffold473 WUBlastX LTR_Gypsy-Troyk 55908 56108 104 - . . scaffold473 WUBlastX LTR_Gypsy 55962 56114 139 - . . scaffold473 WUBlastX LTR_Gypsy-Troyk 56206 56847 477 - . . scaffold473 WUBlastX LTR_Gypsy-Troyk 56832 57095 186 - . . scaffold473 WUBlastX LTR_Gypsy-Troyk 56892 57095 248 - . . scaffold473 WUBlastX LTR_Gypsy-Troyk 57095 57631 537 - . . scaffold473 TRF Tandem_Repeat 67773 67818 92 + . . scaffold473 GLEAN mRNA 68928 71824 1 - . ID=CGI_10010579; scaffold473 GLEAN promoter 71825 72824 1 - . ID=CGI_10010579; scaffold473 GLEAN mRNA 80199 87095 0.638848 - . ID=CGI_10010580; scaffold473 TRF Tandem_Repeat 81599 81829 419 + . . scaffold473 GLEAN promoter 87096 88095 0.638848 - . ID=CGI_10010580; scaffold473 WUBlastX LINE_RTE-X 90658 90849 42 - . . scaffold473 TRF Tandem_Repeat 100143 100200 116 + . . scaffold473 GLEAN mRNA 101109 102987 0.614469 - . ID=CGI_10010581; scaffold473 TRF Tandem_Repeat 101700 101749 100 + . . scaffold473 GLEAN promoter 102988 103987 0.614469 - . ID=CGI_10010581; scaffold473 TRF Tandem_Repeat 103696 103737 84 + . . scaffold473 TRF Tandem_Repeat 108705 108747 86 + . . scaffold473 WUBlastX LINE_Proto2 109061 109489 50 + . . scaffold473 WUBlastX LINE_L2 109127 109882 442 + . . scaffold473 WUBlastX LINE_L2 109823 110206 244 + . . scaffold473 GLEAN promoter 114201 115200 1 + . ID=CGI_10010582; scaffold473 GLEAN mRNA 115201 121090 1 + . ID=CGI_10010582; scaffold473 TRF Tandem_Repeat 116024 116069 83 + . . scaffold473 GLEAN promoter 121853 122852 0.733495 + . ID=CGI_10010583; scaffold473 GLEAN mRNA 122853 124157 0.733495 + . ID=CGI_10010583; scaffold473 GLEAN promoter 125122 126121 0.999308 + . ID=CGI_10010584; scaffold473 GLEAN mRNA 126122 128445 0.999308 + . ID=CGI_10010584; scaffold473 GLEAN mRNA 128805 133437 1 - . ID=CGI_10010585; scaffold473 GLEAN promoter 133438 134437 1 - . ID=CGI_10010585; scaffold473 GLEAN promoter 136337 137336 1 + . ID=CGI_10010586; scaffold473 GLEAN mRNA 137337 138624 1 + . ID=CGI_10010586; scaffold473 GLEAN promoter 144011 145010 0.999516 + . ID=CGI_10010587; scaffold473 GLEAN mRNA 145011 149697 0.999516 + . ID=CGI_10010587; scaffold473 GLEAN promoter 154683 155682 1 + . ID=CGI_10010588; scaffold473 GLEAN mRNA 155683 161209 1 + . ID=CGI_10010588; scaffold473 TRF Tandem_Repeat 161703 161740 60 + . . scaffold473 TRF Tandem_Repeat 173551 173593 86 + . . scaffold473 TRF Tandem_Repeat 180190 180229 80 + . . scaffold473 GLEAN promoter 181701 182700 0.245263 + . ID=CGI_10010589; scaffold473 GLEAN mRNA 182701 224360 0.245263 + . ID=CGI_10010589; scaffold473 TRF Tandem_Repeat 213263 213289 54 + . . scaffold473 TRF Tandem_Repeat 235497 235530 59 + . . scaffold473 TRF Tandem_Repeat 236005 236040 54 + . . scaffold474 TRF Tandem_Repeat 2975 3033 109 + . . scaffold474 GLEAN promoter 3843 4842 1 + . ID=CGI_10007588; scaffold474 GLEAN mRNA 4843 9071 1 + . ID=CGI_10007588; scaffold474 TRF Tandem_Repeat 12407 12641 276 + . . scaffold474 WUBlastX LINE_RTE-X 14956 15042 31 - . . scaffold474 WUBlastX LINE_RTE-X 15063 16472 486 - . . scaffold474 WUBlastX LINE_L1 16352 17038 60 - . . scaffold474 WUBlastX LINE_L2 16406 17203 22 - . . scaffold474 WUBlastX LINE_CR1 16430 16903 113 - . . scaffold474 WUBlastX LINE_RTE-X 16448 16825 166 - . . scaffold474 WUBlastX LINE_RTE-X 16448 16750 204 - . . scaffold474 GLEAN mRNA 19165 32940 0.635788 - . ID=CGI_10007590; scaffold474 GLEAN promoter 30807 31806 0.711345 + . ID=CGI_10007591; scaffold474 GLEAN mRNA 31807 44448 0.711345 + . ID=CGI_10007591; scaffold474 GLEAN promoter 32941 33940 0.635788 - . ID=CGI_10007590; scaffold474 WUBlastX LTR_Pao 41714 42400 237 - . . scaffold474 WUBlastX LTR_Pao 41849 42388 249 - . . scaffold474 TRF Tandem_Repeat 51146 51178 66 + . . scaffold474 TRF Tandem_Repeat 61558 61781 206 + . . scaffold474 GLEAN mRNA 67208 67411 0.996136 - . ID=CGI_10007592; scaffold474 GLEAN promoter 67412 68411 0.996136 - . ID=CGI_10007592; scaffold474 TRF Tandem_Repeat 69846 69882 74 + . . scaffold474 WUBlastX DNA_PiggyBac 94799 95131 46 + . . scaffold474 WUBlastX DNA_PiggyBac 94910 95149 47 + . . scaffold474 WUBlastX DNA_PiggyBac 94925 95125 96 + . . scaffold474 WUBlastX DNA_PiggyBac 95391 95903 218 + . . scaffold474 TRF Tandem_Repeat 98057 98726 749 + . . scaffold474 WUBlastX RC_Helitron 104181 104453 97 - . . scaffold474 WUBlastX RC_Helitron 104262 104489 103 - . . scaffold474 WUBlastX RC_Helitron 104456 104572 26 - . . scaffold474 WUBlastX RC_Helitron 104510 106414 354 - . . scaffold474 WUBlastX RC_Helitron 105392 106411 435 - . . scaffold474 GLEAN promoter 106560 107559 0.993584 + . ID=CGI_10007593; scaffold474 TRF Tandem_Repeat 107239 107277 51 + . . scaffold474 GLEAN mRNA 107560 121682 0.993584 + . ID=CGI_10007593; scaffold474 TRF Tandem_Repeat 111648 111840 167 + . . scaffold474 TRF Tandem_Repeat 111956 112290 235 + . . scaffold474 TRF Tandem_Repeat 111987 112261 185 + . . scaffold474 TRF Tandem_Repeat 119373 120131 1222 + . . scaffold474 TRF Tandem_Repeat 123683 123887 168 + . . scaffold474 TRF Tandem_Repeat 125194 125289 185 + . . scaffold474 TRF Tandem_Repeat 127668 128288 1089 + . . scaffold474 TRF Tandem_Repeat 130494 130543 100 + . . scaffold474 TRF Tandem_Repeat 131678 131884 351 + . . scaffold474 GLEAN promoter 132064 133063 1 + . ID=CGI_10007594; scaffold474 GLEAN mRNA 133064 133739 1 + . ID=CGI_10007594; scaffold474 TRF Tandem_Repeat 135571 135605 70 + . . scaffold474 TRF Tandem_Repeat 137741 137829 151 + . . scaffold474 GLEAN mRNA 146948 149314 1 - . ID=CGI_10007595; scaffold474 GLEAN promoter 149315 150314 1 - . ID=CGI_10007595; scaffold474 TRF Tandem_Repeat 153411 153446 72 + . . scaffold474 GLEAN promoter 153693 154692 1 + . ID=CGI_10007596; scaffold474 GLEAN mRNA 154693 157011 1 + . ID=CGI_10007596; scaffold474 GLEAN promoter 167143 168142 0.916924 + . ID=CGI_10007597; scaffold474 GLEAN mRNA 168143 169084 0.916924 + . ID=CGI_10007597; scaffold474 GLEAN mRNA 173461 184050 0.256829 - . ID=CGI_10007598; scaffold474 WUBlastX LINE_RTE-BovB 175833 176375 81 + . . scaffold474 WUBlastX LINE_RTE-BovB 176392 176556 95 + . . scaffold474 WUBlastX LINE_RTE-BovB 176621 176896 20 + . . scaffold474 WUBlastX LINE_RTE-BovB 176800 176931 56 + . . scaffold474 TRF Tandem_Repeat 177252 177930 729 + . . scaffold474 GLEAN promoter 184051 185050 0.256829 - . ID=CGI_10007598; scaffold474 GLEAN mRNA 184448 184906 0.59015 - . ID=CGI_10007599; scaffold474 WUBlastX LTR_Copia 184675 184746 24 - . . scaffold474 GLEAN promoter 184907 185903 0.59015 - . ID=CGI_10007599; scaffold474 WUBlastX LTR_Gypsy 184990 185901 145 - . . scaffold474 WUBlastX LTR_Gypsy 185266 185901 282 - . . scaffold474 WUBlastX LTR_Gypsy 185377 185901 488 - . . scaffold475 GLEAN mRNA 4744 9923 1 - . ID=CGI_10000789; scaffold475 GLEAN promoter 9924 10143 1 - . ID=CGI_10000789; scaffold476 WUBlastX LINE_L1-Tx1 8050 8928 115 + . . scaffold477 WUBlastX LINE_RTE-X 3233 3505 22 + . . scaffold477 WUBlastX LINE_RTE-X 3278 3493 37 + . . scaffold477 GLEAN promoter 12317 13316 0.997437 + . ID=CGI_10012306; scaffold477 GLEAN mRNA 13317 17277 0.997437 + . ID=CGI_10012306; scaffold477 GLEAN promoter 16506 17505 0.994642 + . ID=CGI_10012307; scaffold477 TRF Tandem_Repeat 17384 17414 62 + . . scaffold477 GLEAN mRNA 17506 28936 0.994642 + . ID=CGI_10012307; scaffold477 TRF Tandem_Repeat 18711 19060 470 + . . scaffold477 GLEAN promoter 31754 32753 0.999672 + . ID=CGI_10012308; scaffold477 GLEAN mRNA 32754 45872 0.999672 + . ID=CGI_10012308; scaffold477 TRF Tandem_Repeat 33375 33410 54 + . . scaffold477 TRF Tandem_Repeat 33414 33466 81 + . . scaffold477 GLEAN promoter 45689 46688 0.855741 + . ID=CGI_10012309; scaffold477 TRF Tandem_Repeat 46308 46358 102 + . . scaffold477 GLEAN mRNA 46689 64755 0.855741 + . ID=CGI_10012309; scaffold477 WUBlastX LINE_RTE-X 50767 50979 103 - . . scaffold477 WUBlastX LINE_RTE-X 50770 51054 71 - . . scaffold477 TRF Tandem_Repeat 57771 57946 230 + . . scaffold477 TRF Tandem_Repeat 57792 57946 111 + . . scaffold477 TRF Tandem_Repeat 66456 66522 80 + . . scaffold477 TRF Tandem_Repeat 69863 69894 55 + . . scaffold477 TRF Tandem_Repeat 77286 77329 88 + . . scaffold477 GLEAN mRNA 87726 98112 1 - . ID=CGI_10012310; scaffold477 TRF Tandem_Repeat 94475 94611 173 + . . scaffold477 GLEAN promoter 98113 99112 1 - . ID=CGI_10012310; scaffold477 GLEAN promoter 98672 99671 0.780447 + . ID=CGI_10012311; scaffold477 GLEAN mRNA 99672 101879 0.780447 + . ID=CGI_10012311; scaffold477 TRF Tandem_Repeat 100390 100436 94 + . . scaffold477 GLEAN promoter 104108 105107 0.999661 + . ID=CGI_10012312; scaffold477 GLEAN mRNA 105108 106841 0.999661 + . ID=CGI_10012312; scaffold477 TRF Tandem_Repeat 109330 109367 76 + . . scaffold477 WUBlastX DNA_TcMar-Tc1 121486 121785 76 + . . scaffold477 WUBlastX DNA_TcMar-Tc1 121794 122015 41 + . . scaffold477 WUBlastX LTR_Gypsy 161036 162535 474 + . . scaffold477 WUBlastX LTR_Gypsy 161270 162535 757 + . . scaffold477 WUBlastX LTR_Gypsy 162107 162682 57 + . . scaffold477 WUBlastX LTR_Copia 162741 162887 21 + . . scaffold477 GLEAN mRNA 164174 176835 1 - . ID=CGI_10012313; scaffold477 TRF Tandem_Repeat 172207 172500 378 + . . scaffold477 TRF Tandem_Repeat 172207 172497 311 + . . scaffold477 TRF Tandem_Repeat 172207 172500 320 + . . scaffold477 GLEAN promoter 176836 177835 1 - . ID=CGI_10012313; scaffold477 GLEAN mRNA 176891 195532 0.99935 - . ID=CGI_10012314; scaffold477 GLEAN promoter 182837 183836 0.835495 + . ID=CGI_10012315; scaffold477 GLEAN promoter 183162 184161 0.777728 + . ID=CGI_10012316; scaffold477 GLEAN mRNA 183837 184085 0.835495 + . ID=CGI_10012315; scaffold477 GLEAN mRNA 184162 185562 0.777728 + . ID=CGI_10012316; scaffold477 GLEAN promoter 195533 196532 0.99935 - . ID=CGI_10012314; scaffold477 GLEAN mRNA 196136 222156 0.811187 - . ID=CGI_10012317; scaffold477 TRF Tandem_Repeat 198029 198283 336 + . . scaffold477 TRF Tandem_Repeat 198029 198242 338 + . . scaffold477 TRF Tandem_Repeat 202658 202701 70 + . . scaffold477 TRF Tandem_Repeat 203384 203437 108 + . . scaffold477 TRF Tandem_Repeat 210488 210549 67 + . . scaffold477 GLEAN promoter 222157 223156 0.811187 - . ID=CGI_10012317; scaffold477 TRF Tandem_Repeat 222536 222607 144 + . . scaffold477 GLEAN mRNA 228228 229199 0.969638 - . ID=CGI_10012318; scaffold477 GLEAN promoter 229200 230199 0.969638 - . ID=CGI_10012318; scaffold477 TRF Tandem_Repeat 230103 230146 88 + . . scaffold477 GLEAN mRNA 230240 241581 0.65113 - . ID=CGI_10012319; scaffold477 TRF Tandem_Repeat 231922 232045 89 + . . scaffold477 TRF Tandem_Repeat 234137 234175 78 + . . scaffold477 TRF Tandem_Repeat 234649 235221 966 + . . scaffold477 TRF Tandem_Repeat 240786 240855 108 + . . scaffold477 GLEAN promoter 241582 242581 0.65113 - . ID=CGI_10012319; scaffold477 GLEAN promoter 242480 243479 0.777732 + . ID=CGI_10012320; scaffold477 GLEAN mRNA 243480 243701 0.777732 + . ID=CGI_10012320; scaffold477 GLEAN promoter 254486 255485 1 + . ID=CGI_10012321; scaffold477 GLEAN mRNA 255486 255899 1 + . ID=CGI_10012321; scaffold477 TRF Tandem_Repeat 265686 265756 133 + . . scaffold477 TRF Tandem_Repeat 269696 269785 57 + . . scaffold477 TRF Tandem_Repeat 280561 280609 50 + . . scaffold477 TRF Tandem_Repeat 289273 289354 164 + . . scaffold477 TRF Tandem_Repeat 289430 289478 91 + . . scaffold477 TRF Tandem_Repeat 302772 302835 128 + . . scaffold477 TRF Tandem_Repeat 304630 304680 75 + . . scaffold477 TRF Tandem_Repeat 305820 305858 78 + . . scaffold477 TRF Tandem_Repeat 307371 307582 185 + . . scaffold477 TRF Tandem_Repeat 307371 307561 217 + . . scaffold478 GLEAN promoter 6158 7157 0.702157 + . ID=CGI_10001592; scaffold478 GLEAN mRNA 7158 14938 0.702157 + . ID=CGI_10001592; scaffold478 TRF Tandem_Repeat 15346 15376 53 + . . scaffold478 TRF Tandem_Repeat 15376 15413 76 + . . scaffold478 WUBlastX LTR_Ngaro 18430 18531 57 - . . scaffold478 GLEAN promoter 19981 20980 1 + . ID=CGI_10001593; scaffold478 GLEAN mRNA 20981 26467 1 + . ID=CGI_10001593; scaffold479 GLEAN mRNA 1988 3196 0.772197 - . ID=CGI_10015676; scaffold479 GLEAN promoter 3197 4196 0.772197 - . ID=CGI_10015676; scaffold479 WUBlastX LINE_RTE-BovB 4722 4958 82 + . . scaffold479 WUBlastX LINE_RTE-BovB 5112 5411 21 + . . scaffold479 WUBlastX LINE_RTE-BovB 5232 5408 60 + . . scaffold479 WUBlastX LINE_RTE-BovB 5561 5677 26 + . . scaffold479 WUBlastX LINE_RTE-BovB 5588 5683 34 + . . scaffold479 WUBlastX LINE_RTE-BovB 5673 5879 102 + . . scaffold479 WUBlastX LINE_RTE-BovB 6194 6355 23 + . . scaffold479 TRF Tandem_Repeat 7995 8105 89 + . . scaffold479 GLEAN mRNA 8660 10036 0.828502 - . ID=CGI_10015677; scaffold479 GLEAN promoter 10037 11036 0.828502 - . ID=CGI_10015677; scaffold479 GLEAN mRNA 15414 47007 0.996603 - . ID=CGI_10015678; scaffold479 TRF Tandem_Repeat 17249 17278 60 + . . scaffold479 TRF Tandem_Repeat 21974 22014 82 + . . scaffold479 TRF Tandem_Repeat 36363 36593 178 + . . scaffold479 TRF Tandem_Repeat 36385 36645 274 + . . scaffold479 TRF Tandem_Repeat 38821 39212 335 + . . scaffold479 GLEAN promoter 47008 48007 0.996603 - . ID=CGI_10015678; scaffold479 TRF Tandem_Repeat 47720 47754 70 + . . scaffold479 TRF Tandem_Repeat 49551 49584 68 + . . scaffold479 TRF Tandem_Repeat 49928 49954 54 + . . scaffold479 GLEAN promoter 52118 53117 0.59015 + . ID=CGI_10015679; scaffold479 GLEAN mRNA 53118 54605 0.59015 + . ID=CGI_10015679; scaffold479 TRF Tandem_Repeat 54857 55150 355 + . . scaffold479 TRF Tandem_Repeat 55147 55292 129 + . . scaffold479 TRF Tandem_Repeat 56286 56313 56 + . . scaffold479 WUBlastX LINE_R2-Hero 58338 58643 120 - . . scaffold479 WUBlastX LINE_R2-Hero 59413 59607 84 - . . scaffold479 WUBlastX LINE_R2-Hero 59413 59721 77 - . . scaffold479 GLEAN promoter 62306 63305 0.59015 + . ID=CGI_10015680; scaffold479 GLEAN mRNA 63306 64817 0.59015 + . ID=CGI_10015680; scaffold479 WUBlastX DNA_P 65722 65835 49 + . . scaffold479 TRF Tandem_Repeat 67007 67044 58 + . . scaffold479 WUBlastX LINE_R2-Hero 69005 69349 128 - . . scaffold479 WUBlastX LINE_R2-Hero 69324 69617 129 - . . scaffold479 GLEAN promoter 73864 74863 0.990621 + . ID=CGI_10015681; scaffold479 GLEAN mRNA 74864 76375 0.990621 + . ID=CGI_10015681; scaffold479 TRF Tandem_Repeat 77231 77290 84 + . . scaffold479 TRF Tandem_Repeat 78437 79265 1212 + . . scaffold479 TRF Tandem_Repeat 79508 80468 1476 + . . scaffold479 GLEAN promoter 81405 82404 0.898056 + . ID=CGI_10015682; scaffold479 GLEAN mRNA 82405 99723 0.898056 + . ID=CGI_10015682; scaffold479 WUBlastX LTR_DIRS 83385 83747 30 + . . scaffold479 WUBlastX LTR_DIRS 83403 83693 55 + . . scaffold479 WUBlastX LTR_Ngaro 83740 84354 61 + . . scaffold479 WUBlastX LTR_Ngaro 85972 86403 126 + . . scaffold479 WUBlastX LTR_Ngaro 86158 86448 176 + . . scaffold479 WUBlastX LTR_Ngaro 86451 86630 66 + . . scaffold479 WUBlastX LTR_Ngaro 86630 87454 278 + . . scaffold479 WUBlastX LTR_Ngaro 87441 88322 213 + . . scaffold479 WUBlastX LTR_Ngaro 87495 88199 224 + . . scaffold479 TRF Tandem_Repeat 89652 89699 96 + . . scaffold479 GLEAN mRNA 90219 101369 0.988442 - . ID=CGI_10015683; scaffold479 TRF Tandem_Repeat 94074 94864 1197 + . . scaffold479 TRF Tandem_Repeat 96709 96857 95 + . . scaffold479 GLEAN promoter 101370 102369 0.988442 - . ID=CGI_10015683; scaffold479 GLEAN mRNA 102085 106880 0.999676 - . ID=CGI_10015684; scaffold479 TRF Tandem_Repeat 102223 102517 310 + . . scaffold479 GLEAN promoter 106881 107880 0.999676 - . ID=CGI_10015684; scaffold479 TRF Tandem_Repeat 107582 107627 92 + . . scaffold479 GLEAN promoter 108009 109008 0.968499 + . ID=CGI_10015685; scaffold479 GLEAN mRNA 109009 119965 0.968499 + . ID=CGI_10015685; scaffold479 TRF Tandem_Repeat 112853 112884 64 + . . scaffold479 TRF Tandem_Repeat 114101 114292 244 + . . scaffold479 GLEAN mRNA 120991 133849 1 - . ID=CGI_10015686; scaffold479 GLEAN promoter 133850 134849 1 - . ID=CGI_10015686; scaffold479 GLEAN promoter 134621 135620 0.996251 + . ID=CGI_10015687; scaffold479 GLEAN mRNA 135621 142087 0.996251 + . ID=CGI_10015687; scaffold479 TRF Tandem_Repeat 138690 138997 382 + . . scaffold479 TRF Tandem_Repeat 138730 138998 384 + . . scaffold479 TRF Tandem_Repeat 141674 141703 60 + . . scaffold479 GLEAN mRNA 141884 143406 0.999999 - . ID=CGI_10015688; scaffold479 GLEAN promoter 143407 144406 0.999999 - . ID=CGI_10015688; scaffold479 GLEAN promoter 143611 144610 0.998175 + . ID=CGI_10015689; scaffold479 GLEAN mRNA 144611 146146 0.998175 + . ID=CGI_10015689; scaffold479 GLEAN promoter 145904 146903 1 + . ID=CGI_10015690; scaffold479 GLEAN mRNA 146904 148293 1 + . ID=CGI_10015690; scaffold479 TRF Tandem_Repeat 148820 148854 61 + . . scaffold479 GLEAN mRNA 149580 156368 0.999672 - . ID=CGI_10015691; scaffold479 TRF Tandem_Repeat 149815 149926 197 + . . scaffold479 TRF Tandem_Repeat 153921 153978 116 + . . scaffold479 GLEAN promoter 154413 155412 0.993586 + . ID=CGI_10015692; scaffold479 GLEAN mRNA 155413 159672 0.993586 + . ID=CGI_10015692; scaffold479 GLEAN promoter 156369 157368 0.999672 - . ID=CGI_10015691; scaffold479 TRF Tandem_Repeat 163695 163816 100 + . . scaffold479 TRF Tandem_Repeat 163716 163765 84 + . . scaffold479 TRF Tandem_Repeat 166491 166830 671 + . . scaffold479 TRF Tandem_Repeat 170837 171052 193 + . . scaffold479 GLEAN mRNA 173138 174223 0.836238 - . ID=CGI_10015693; scaffold479 GLEAN promoter 174224 175223 0.836238 - . ID=CGI_10015693; scaffold479 GLEAN promoter 189925 190924 0.77233 + . ID=CGI_10015694; scaffold479 GLEAN mRNA 190925 192067 0.77233 + . ID=CGI_10015694; scaffold479 TRF Tandem_Repeat 193498 193752 249 + . . scaffold479 TRF Tandem_Repeat 193841 194422 623 + . . scaffold479 TRF Tandem_Repeat 193841 194422 665 + . . scaffold479 TRF Tandem_Repeat 193841 194422 603 + . . scaffold479 TRF Tandem_Repeat 198033 198061 58 + . . scaffold479 TRF Tandem_Repeat 200112 200444 470 + . . scaffold479 TRF Tandem_Repeat 204929 205068 149 + . . scaffold479 GLEAN mRNA 206252 210274 1 - . ID=CGI_10015695; scaffold479 GLEAN promoter 210275 211274 1 - . ID=CGI_10015695; scaffold479 TRF Tandem_Repeat 216300 216330 62 + . . scaffold479 TRF Tandem_Repeat 221442 221493 104 + . . scaffold479 WUBlastX LTR_Ngaro 227510 227743 120 - . . scaffold479 WUBlastX LTR_Ngaro 227561 227743 126 - . . scaffold479 WUBlastX LINE_RTE-X 234482 234835 94 - . . scaffold479 WUBlastX LINE_RTE-X 234829 235023 79 - . . scaffold479 WUBlastX LINE_RTE-X 234829 235146 60 - . . scaffold479 WUBlastX LINE_RTE-X 234880 235023 86 - . . scaffold479 WUBlastX LTR_Ngaro 236801 237094 54 - . . scaffold479 WUBlastX LTR_Ngaro 236879 237097 70 - . . scaffold479 GLEAN mRNA 237067 237345 0.618241 - . ID=CGI_10015696; scaffold479 GLEAN promoter 237346 238345 0.618241 - . ID=CGI_10015696; scaffold479 TRF Tandem_Repeat 242299 243084 1220 + . . scaffold479 WUBlastX DNA_TcMar-Tc2 248844 249092 54 + . . scaffold479 WUBlastX DNA_TcMar-Tc2 249825 250043 80 + . . scaffold479 TRF Tandem_Repeat 261906 261958 83 + . . scaffold479 TRF Tandem_Repeat 265834 266606 1093 + . . scaffold479 GLEAN promoter 266141 267140 0.229566 + . ID=CGI_10015697; scaffold479 GLEAN mRNA 267141 287717 0.229566 + . ID=CGI_10015697; scaffold479 TRF Tandem_Repeat 271511 271644 92 + . . scaffold479 GLEAN mRNA 289479 289721 1 - . ID=CGI_10015698; scaffold479 GLEAN promoter 289722 290721 1 - . ID=CGI_10015698; scaffold479 GLEAN mRNA 291328 295503 0.999487 - . ID=CGI_10015699; scaffold479 GLEAN promoter 295504 296503 0.999487 - . ID=CGI_10015699; scaffold479 TRF Tandem_Repeat 297148 297200 106 + . . scaffold479 GLEAN mRNA 298196 323122 0.478892 - . ID=CGI_10015700; scaffold479 WUBlastX LINE_RTE-X 308230 308451 23 + . . scaffold479 WUBlastX LINE_RTE-X 308595 308759 47 + . . scaffold479 WUBlastX LINE_RTE-X 308598 308720 49 + . . scaffold479 GLEAN promoter 323123 324122 0.478892 - . ID=CGI_10015700; scaffold479 TRF Tandem_Repeat 323508 323548 82 + . . scaffold479 GLEAN promoter 337815 338814 1 + . ID=CGI_10015701; scaffold479 GLEAN mRNA 338815 340098 1 + . ID=CGI_10015701; scaffold479 TRF Tandem_Repeat 345635 345685 54 + . . scaffold479 TRF Tandem_Repeat 356727 356784 53 + . . scaffold479 TRF Tandem_Repeat 358260 358329 140 + . . scaffold479 TRF Tandem_Repeat 370204 370240 74 + . . scaffold479 TRF Tandem_Repeat 373072 373113 84 + . . scaffold479 TRF Tandem_Repeat 376110 376163 108 + . . scaffold479 TRF Tandem_Repeat 379700 379800 181 + . . scaffold479 TRF Tandem_Repeat 390621 390657 67 + . . scaffold479 TRF Tandem_Repeat 399768 399836 50 + . . scaffold479 TRF Tandem_Repeat 400306 400356 102 + . . scaffold479 WUBlastX DNA_Maverick 410313 410618 53 - . . scaffold479 WUBlastX DNA_Maverick 410767 411000 39 - . . scaffold479 WUBlastX DNA_Maverick 410854 410985 42 - . . scaffold479 WUBlastX DNA_Maverick 410999 411088 35 - . . scaffold479 WUBlastX DNA_Maverick 411259 411597 124 - . . scaffold479 WUBlastX DNA_Maverick 411292 411810 103 - . . scaffold479 TRF Tandem_Repeat 412115 412164 55 + . . scaffold479 TRF Tandem_Repeat 412566 412606 73 + . . scaffold479 TRF Tandem_Repeat 414053 414106 90 + . . scaffold479 GLEAN promoter 419249 420248 0.99319 + . ID=CGI_10015702; scaffold479 GLEAN mRNA 420249 425742 0.99319 + . ID=CGI_10015702; scaffold479 WUBlastX LTR_Ngaro 421476 422201 97 + . . scaffold479 WUBlastX LTR_Ngaro 421893 422201 115 + . . scaffold479 WUBlastX LTR_Ngaro 422522 423994 629 + . . scaffold479 WUBlastX LTR_Ngaro 423994 424134 49 + . . scaffold479 WUBlastX LTR_Ngaro 424337 424792 119 + . . scaffold479 WUBlastX LTR_Ngaro 424762 425037 94 + . . scaffold479 TRF Tandem_Repeat 436227 436266 80 + . . scaffold48 TRF Tandem_Repeat 21374 21412 53 + . . scaffold48 TRF Tandem_Repeat 21966 22016 54 + . . scaffold48 TRF Tandem_Repeat 27327 27384 89 + . . scaffold48 GLEAN mRNA 28624 42835 0.856948 - . ID=CGI_10023879; scaffold48 TRF Tandem_Repeat 29956 30036 153 + . . scaffold48 TRF Tandem_Repeat 30710 30885 153 + . . scaffold48 TRF Tandem_Repeat 31562 31620 55 + . . scaffold48 TRF Tandem_Repeat 31569 31620 86 + . . scaffold48 TRF Tandem_Repeat 31573 31619 67 + . . scaffold48 GLEAN promoter 42836 43835 0.856948 - . ID=CGI_10023879; scaffold48 TRF Tandem_Repeat 45724 46072 295 + . . scaffold48 TRF Tandem_Repeat 45951 46619 952 + . . scaffold48 GLEAN promoter 49793 50792 0.618241 + . ID=CGI_10023880; scaffold48 GLEAN mRNA 50793 50969 0.618241 + . ID=CGI_10023880; scaffold48 TRF Tandem_Repeat 71113 71386 265 + . . scaffold48 TRF Tandem_Repeat 71172 71359 187 + . . scaffold48 TRF Tandem_Repeat 74682 74728 94 + . . scaffold48 TRF Tandem_Repeat 74729 74778 100 + . . scaffold48 GLEAN promoter 75321 76320 0.965913 + . ID=CGI_10023881; scaffold48 GLEAN mRNA 76321 76581 0.965913 + . ID=CGI_10023881; scaffold48 TRF Tandem_Repeat 77583 77659 154 + . . scaffold48 TRF Tandem_Repeat 77707 77771 76 + . . scaffold48 TRF Tandem_Repeat 79171 79217 85 + . . scaffold48 TRF Tandem_Repeat 84137 84188 95 + . . scaffold48 TRF Tandem_Repeat 84482 84506 50 + . . scaffold48 TRF Tandem_Repeat 84732 85090 510 + . . scaffold48 GLEAN promoter 85919 86918 1 + . ID=CGI_10023882; scaffold48 GLEAN mRNA 86919 93794 1 + . ID=CGI_10023882; scaffold48 TRF Tandem_Repeat 90264 90310 58 + . . scaffold48 TRF Tandem_Repeat 90264 90314 75 + . . scaffold48 TRF Tandem_Repeat 95712 95741 60 + . . scaffold48 GLEAN promoter 106606 107605 0.999676 + . ID=CGI_10023883; scaffold48 GLEAN mRNA 107606 114677 0.999676 + . ID=CGI_10023883; scaffold48 TRF Tandem_Repeat 107780 107840 122 + . . scaffold48 GLEAN promoter 118583 119582 0.933236 + . ID=CGI_10023884; scaffold48 GLEAN mRNA 119583 124103 0.933236 + . ID=CGI_10023884; scaffold48 GLEAN promoter 123474 124473 0.924637 + . ID=CGI_10023885; scaffold48 GLEAN mRNA 124474 140752 0.924637 + . ID=CGI_10023885; scaffold48 WUBlastX DNA_TcMar-Marin 126154 126405 168 + . . scaffold48 TRF Tandem_Repeat 131436 132336 1529 + . . scaffold48 WUBlastX LINE_L1-Tx1 139943 140296 85 - . . scaffold48 WUBlastX LINE_L1-Tx1 142444 142635 44 - . . scaffold48 WUBlastX LINE_L1-Tx1 142480 142644 59 - . . scaffold48 WUBlastX LINE_L1-Tx1 142653 143621 361 - . . scaffold48 WUBlastX LINE_L1-Tx1 143618 143674 20 - . . scaffold48 WUBlastX LINE_L1-Tx1 143717 143902 33 - . . scaffold48 WUBlastX LINE_L1-Tx1 143750 143899 96 - . . scaffold48 WUBlastX LINE_L1-Tx1 143780 143998 31 - . . scaffold48 WUBlastX LINE_L1-Tx1 143798 143920 39 - . . scaffold48 WUBlastX LINE_L1-Tx1 143967 144860 194 - . . scaffold48 TRF Tandem_Repeat 146237 146319 60 + . . scaffold48 TRF Tandem_Repeat 148572 148650 151 + . . scaffold48 WUBlastX LINE_L1 163120 163638 25 - . . scaffold48 WUBlastX LINE_L1-Tx1 163743 165185 383 - . . scaffold48 WUBlastX LINE_L1 164178 165185 389 - . . scaffold48 TRF Tandem_Repeat 176349 176402 63 + . . scaffold48 WUBlastX LINE_Penelope 196452 196862 285 - . . scaffold48 WUBlastX LINE_Penelope 196800 197978 333 - . . scaffold48 GLEAN promoter 199273 200272 1 + . ID=CGI_10023886; scaffold48 GLEAN mRNA 200273 212906 1 + . ID=CGI_10023886; scaffold48 TRF Tandem_Repeat 208038 209197 1241 + . . scaffold48 TRF Tandem_Repeat 216585 216623 78 + . . scaffold48 TRF Tandem_Repeat 222827 223105 288 + . . scaffold48 TRF Tandem_Repeat 223383 224156 1163 + . . scaffold48 GLEAN promoter 224006 225005 1 + . ID=CGI_10023887; scaffold48 TRF Tandem_Repeat 224313 224381 111 + . . scaffold48 GLEAN mRNA 225006 227063 1 + . ID=CGI_10023887; scaffold48 TRF Tandem_Repeat 228723 228776 108 + . . scaffold48 GLEAN promoter 230559 231558 1 + . ID=CGI_10023888; scaffold48 GLEAN mRNA 231559 233360 1 + . ID=CGI_10023888; scaffold48 GLEAN promoter 234143 235142 0.996819 + . ID=CGI_10023889; scaffold48 GLEAN mRNA 235143 237024 0.996819 + . ID=CGI_10023889; scaffold48 TRF Tandem_Repeat 240905 240999 70 + . . scaffold48 TRF Tandem_Repeat 241000 241149 99 + . . scaffold48 GLEAN mRNA 242671 244575 0.999349 - . ID=CGI_10023890; scaffold48 GLEAN promoter 244576 245575 0.999349 - . ID=CGI_10023890; scaffold48 TRF Tandem_Repeat 256585 256682 196 + . . scaffold48 TRF Tandem_Repeat 259473 259618 109 + . . scaffold48 WUBlastX LINE_RTE-X 259671 259946 26 + . . scaffold48 WUBlastX LINE_RTE-X 259683 259808 46 + . . scaffold48 WUBlastX LINE_RTE-X 259719 259910 59 + . . scaffold48 TRF Tandem_Repeat 263761 263826 105 + . . scaffold48 TRF Tandem_Repeat 266527 267474 525 + . . scaffold48 GLEAN mRNA 269582 278599 0.988048 - . ID=CGI_10023891; scaffold48 WUBlastX DNA_hAT-Tip100 269636 269848 67 - . . scaffold48 TRF Tandem_Repeat 275086 275265 263 + . . scaffold48 TRF Tandem_Repeat 278045 278115 72 + . . scaffold48 TRF Tandem_Repeat 278046 278115 74 + . . scaffold48 GLEAN promoter 278600 279599 0.988048 - . ID=CGI_10023891; scaffold48 TRF Tandem_Repeat 284614 284676 90 + . . scaffold48 TRF Tandem_Repeat 287034 287074 82 + . . scaffold48 TRF Tandem_Repeat 287264 287326 56 + . . scaffold48 TRF Tandem_Repeat 287834 287900 71 + . . scaffold48 TRF Tandem_Repeat 291560 291611 68 + . . scaffold48 TRF Tandem_Repeat 291560 291619 75 + . . scaffold48 GLEAN mRNA 292377 293573 0.999413 - . ID=CGI_10023892; scaffold48 GLEAN promoter 292800 293799 0.508741 + . ID=CGI_10023893; scaffold48 GLEAN promoter 293574 294573 0.999413 - . ID=CGI_10023892; scaffold48 GLEAN mRNA 293800 310317 0.508741 + . ID=CGI_10023893; scaffold48 TRF Tandem_Repeat 297572 297626 110 + . . scaffold48 TRF Tandem_Repeat 304955 305085 182 + . . scaffold48 TRF Tandem_Repeat 308670 308732 90 + . . scaffold48 TRF Tandem_Repeat 309398 309460 126 + . . scaffold48 TRF Tandem_Repeat 318474 318506 57 + . . scaffold48 TRF Tandem_Repeat 320426 320456 62 + . . scaffold48 TRF Tandem_Repeat 322318 322371 55 + . . scaffold48 TRF Tandem_Repeat 322544 323292 1096 + . . scaffold48 TRF Tandem_Repeat 331203 331270 136 + . . scaffold48 GLEAN mRNA 337897 342417 0.498786 - . ID=CGI_10023894; scaffold48 GLEAN promoter 342418 343417 0.498786 - . ID=CGI_10023894; scaffold48 TRF Tandem_Repeat 368731 368780 100 + . . scaffold48 GLEAN promoter 369782 370781 0.499962 + . ID=CGI_10023895; scaffold48 GLEAN mRNA 370782 386462 0.499962 + . ID=CGI_10023895; scaffold48 GLEAN mRNA 372542 377149 1 - . ID=CGI_10023896; scaffold48 GLEAN promoter 377150 378149 1 - . ID=CGI_10023896; scaffold48 GLEAN mRNA 380506 412698 0.354904 - . ID=CGI_10023897; scaffold48 TRF Tandem_Repeat 383923 383977 94 + . . scaffold48 TRF Tandem_Repeat 408285 408660 282 + . . scaffold48 TRF Tandem_Repeat 408809 409300 358 + . . scaffold48 TRF Tandem_Repeat 411814 411855 84 + . . scaffold48 GLEAN promoter 412699 413698 0.354904 - . ID=CGI_10023897; scaffold48 GLEAN mRNA 417028 444414 0.559676 - . ID=CGI_10023898; scaffold48 TRF Tandem_Repeat 423708 423757 100 + . . scaffold48 TRF Tandem_Repeat 428606 428662 114 + . . scaffold48 TRF Tandem_Repeat 433505 433897 588 + . . scaffold48 GLEAN promoter 444415 445414 0.559676 - . ID=CGI_10023898; scaffold48 TRF Tandem_Repeat 446589 447352 923 + . . scaffold48 TRF Tandem_Repeat 447400 447430 53 + . . scaffold48 TRF Tandem_Repeat 453262 453303 84 + . . scaffold48 GLEAN promoter 454512 455511 0.934257 + . ID=CGI_10023899; scaffold48 GLEAN mRNA 455512 457713 0.934257 + . ID=CGI_10023899; scaffold48 TRF Tandem_Repeat 457355 457379 50 + . . scaffold48 GLEAN mRNA 459232 460948 0.998817 - . ID=CGI_10023900; scaffold48 GLEAN promoter 460351 461350 1 + . ID=CGI_10023901; scaffold48 GLEAN promoter 460949 461948 0.998817 - . ID=CGI_10023900; scaffold48 GLEAN mRNA 461351 464029 1 + . ID=CGI_10023901; scaffold48 GLEAN mRNA 468762 492575 0.999999 - . ID=CGI_10023902; scaffold48 GLEAN promoter 492576 493575 0.999999 - . ID=CGI_10023902; scaffold48 GLEAN mRNA 507497 507791 1 - . ID=CGI_10023903; scaffold48 GLEAN promoter 507792 508791 1 - . ID=CGI_10023903; scaffold48 GLEAN promoter 515983 516982 0.998083 + . ID=CGI_10023904; scaffold48 GLEAN mRNA 516983 523764 0.998083 + . ID=CGI_10023904; scaffold48 GLEAN mRNA 526533 527619 1 - . ID=CGI_10023905; scaffold48 GLEAN promoter 527620 528619 1 - . ID=CGI_10023905; scaffold48 GLEAN promoter 528087 529086 0.928882 + . ID=CGI_10023906; scaffold48 GLEAN mRNA 529087 543822 0.928882 + . ID=CGI_10023906; scaffold48 WUBlastX DNA_TcMar-Tc2 530338 530628 187 + . . scaffold48 WUBlastX DNA_TcMar-Tc2 530580 531206 312 + . . scaffold48 WUBlastX DNA_TcMar-Tc2 530655 531173 417 + . . scaffold48 TRF Tandem_Repeat 536877 536957 85 + . . scaffold48 TRF Tandem_Repeat 538954 539032 144 + . . scaffold48 TRF Tandem_Repeat 554593 554637 90 + . . scaffold48 GLEAN promoter 560849 561848 0.999025 + . ID=CGI_10023907; scaffold48 GLEAN mRNA 561849 585263 0.999025 + . ID=CGI_10023907; scaffold48 TRF Tandem_Repeat 570003 570302 136 + . . scaffold48 TRF Tandem_Repeat 570003 570280 209 + . . scaffold48 TRF Tandem_Repeat 570031 570272 205 + . . scaffold48 GLEAN promoter 588429 589428 0.999676 + . ID=CGI_10023908; scaffold48 GLEAN mRNA 589429 602421 0.999676 + . ID=CGI_10023908; scaffold48 GLEAN mRNA 604265 605990 1 - . ID=CGI_10023909; scaffold48 GLEAN promoter 605991 606990 1 - . ID=CGI_10023909; scaffold48 TRF Tandem_Repeat 610835 611843 924 + . . scaffold48 TRF Tandem_Repeat 610835 611840 874 + . . scaffold48 TRF Tandem_Repeat 611067 611854 541 + . . scaffold48 GLEAN promoter 611434 612433 0.999997 + . ID=CGI_10023910; scaffold48 GLEAN mRNA 612434 615264 0.999997 + . ID=CGI_10023910; scaffold48 GLEAN promoter 616728 617727 0.397814 + . ID=CGI_10023911; scaffold48 GLEAN mRNA 617728 656748 0.397814 + . ID=CGI_10023911; scaffold48 GLEAN mRNA 621371 623032 0.481546 - . ID=CGI_10023912; scaffold48 GLEAN promoter 623033 624032 0.481546 - . ID=CGI_10023912; scaffold48 TRF Tandem_Repeat 636894 636933 53 + . . scaffold48 TRF Tandem_Repeat 637507 637600 82 + . . scaffold48 TRF Tandem_Repeat 644333 645019 1087 + . . scaffold48 TRF Tandem_Repeat 646500 647163 830 + . . scaffold48 GLEAN promoter 655821 656820 0.995709 + . ID=CGI_10023913; scaffold48 GLEAN mRNA 656821 666863 0.995709 + . ID=CGI_10023913; scaffold48 TRF Tandem_Repeat 665793 665878 127 + . . scaffold48 GLEAN mRNA 667705 673576 0.648545 - . ID=CGI_10023914; scaffold48 TRF Tandem_Repeat 672410 672531 167 + . . scaffold48 GLEAN promoter 673577 674576 0.648545 - . ID=CGI_10023914; scaffold48 GLEAN mRNA 677118 686975 0.999676 - . ID=CGI_10023915; scaffold48 TRF Tandem_Repeat 680741 680777 74 + . . scaffold48 GLEAN promoter 686976 687975 0.999676 - . ID=CGI_10023915; scaffold48 TRF Tandem_Repeat 694169 694307 188 + . . scaffold48 TRF Tandem_Repeat 695406 695470 55 + . . scaffold48 WUBlastX LINE_CR1-L2 699908 700057 33 + . . scaffold48 WUBlastX LINE_CR1-L2 700194 700370 38 + . . scaffold48 TRF Tandem_Repeat 701007 701049 86 + . . scaffold48 TRF Tandem_Repeat 708195 709220 1353 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 709405 709629 30 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 709566 709955 112 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 709635 709940 149 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 709635 710015 126 + . . scaffold48 WUBlastX DNA_Harbinger 716564 716908 154 + . . scaffold48 WUBlastX DNA_Harbinger 717133 717381 202 + . . scaffold48 WUBlastX DNA_Harbinger 717184 717432 69 + . . scaffold48 WUBlastX DNA_Harbinger 717673 717726 36 + . . scaffold48 TRF Tandem_Repeat 723147 723197 70 + . . scaffold48 WUBlastX DNA_TcMar-Tc2 725393 725569 43 - . . scaffold48 WUBlastX DNA_TcMar-Tc2 725459 725554 60 - . . scaffold48 WUBlastX DNA_TcMar-Tc2 725562 726245 314 - . . scaffold48 WUBlastX DNA_TcMar-Tc2 726119 726409 26 - . . scaffold48 WUBlastX DNA_TcMar-Tc2 726238 726360 52 - . . scaffold48 WUBlastX DNA_TcMar-Tc1 732429 732785 35 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 732450 732632 74 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 732453 732698 66 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 732489 732650 84 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 732763 733059 32 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 732844 733059 74 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 733058 733138 59 + . . scaffold48 WUBlastX DNA_TcMar-Tc1 733152 733286 76 + . . scaffold48 WUBlastX LINE_Rex-Babar 733249 734229 108 + . . scaffold48 WUBlastX LINE_L2 733543 734748 560 + . . scaffold48 WUBlastX LINE_CR1-L2 734691 734870 26 + . . scaffold48 TRF Tandem_Repeat 749340 749407 100 + . . scaffold48 WUBlastX LTR_Gypsy 752142 752501 306 + . . scaffold48 WUBlastX LTR_Gypsy 752480 755170 1940 + . . scaffold48 WUBlastX LTR_Gypsy 755149 755622 463 + . . scaffold48 WUBlastX LTR_Gypsy 755535 756134 217 + . . scaffold48 WUBlastX LTR_Copia 756042 756230 33 + . . scaffold48 GLEAN mRNA 759049 760065 0.999909 - . ID=CGI_10023916; scaffold48 GLEAN promoter 759929 760928 0.386498 + . ID=CGI_10023917; scaffold48 GLEAN promoter 760066 761065 0.999909 - . ID=CGI_10023916; scaffold48 WUBlastX LTR_Gypsy 760489 760779 64 + . . scaffold48 GLEAN mRNA 760929 770155 0.386498 + . ID=CGI_10023917; scaffold48 WUBlastX LTR_Pao 772709 772876 64 - . . scaffold48 WUBlastX LTR_Gypsy 772748 774046 270 - . . scaffold48 WUBlastX LTR_Gypsy 772958 774082 699 - . . scaffold48 WUBlastX LTR_Gypsy 773072 774292 310 - . . scaffold48 GLEAN promoter 774257 775256 0.386498 + . ID=CGI_10023918; scaffold48 WUBlastX LTR_Gypsy 774304 774387 22 - . . scaffold48 WUBlastX LTR_Gypsy 774325 774453 28 - . . scaffold48 WUBlastX LTR_Foamy 775020 775103 31 - . . scaffold48 GLEAN mRNA 775257 790659 0.386498 + . ID=CGI_10023918; scaffold48 TRF Tandem_Repeat 778099 778408 183 + . . scaffold48 TRF Tandem_Repeat 778099 778408 171 + . . scaffold48 TRF Tandem_Repeat 778127 778404 276 + . . scaffold48 TRF Tandem_Repeat 778701 778788 115 + . . scaffold48 TRF Tandem_Repeat 778927 778968 50 + . . scaffold48 TRF Tandem_Repeat 788115 788588 687 + . . scaffold48 TRF Tandem_Repeat 788115 788588 774 + . . scaffold48 WUBlastX LINE_L1 795078 795164 23 - . . scaffold48 WUBlastX LINE_L1-Tx1 795697 795867 31 - . . scaffold48 WUBlastX LINE_L1-Tx1 795730 795843 39 - . . scaffold48 WUBlastX LINE_L1-Tx1 795846 796475 39 - . . scaffold48 WUBlastX LINE_L1 795948 796313 45 - . . scaffold48 WUBlastX LINE_L1 796315 796422 53 - . . scaffold48 TRF Tandem_Repeat 798200 798261 124 + . . scaffold48 TRF Tandem_Repeat 801863 801991 109 + . . scaffold48 GLEAN promoter 802201 803200 1 + . ID=CGI_10023919; scaffold48 GLEAN mRNA 803201 804269 1 + . ID=CGI_10023919; scaffold48 TRF Tandem_Repeat 809129 809157 58 + . . scaffold48 GLEAN promoter 809683 810682 0.999674 + . ID=CGI_10023920; scaffold48 GLEAN mRNA 810683 825741 0.999674 + . ID=CGI_10023920; scaffold48 TRF Tandem_Repeat 817437 817493 114 + . . scaffold48 GLEAN promoter 830080 831079 0.997818 + . ID=CGI_10023921; scaffold48 GLEAN mRNA 831080 835306 0.997818 + . ID=CGI_10023921; scaffold48 TRF Tandem_Repeat 835921 835991 142 + . . scaffold48 GLEAN mRNA 837355 881877 0.994936 - . ID=CGI_10023922; scaffold48 GLEAN promoter 857180 858179 0.428701 + . ID=CGI_10023923; scaffold48 TRF Tandem_Repeat 857540 857600 122 + . . scaffold48 GLEAN mRNA 858180 867722 0.428701 + . ID=CGI_10023923; scaffold48 TRF Tandem_Repeat 871633 871835 370 + . . scaffold48 TRF Tandem_Repeat 871662 871814 69 + . . scaffold48 GLEAN promoter 881878 882877 0.994936 - . ID=CGI_10023922; scaffold481 GLEAN promoter 1386 2385 0.531221 + . ID=CGI_10027190; scaffold481 GLEAN mRNA 2386 12905 0.531221 + . ID=CGI_10027190; scaffold481 TRF Tandem_Repeat 5732 5980 198 + . . scaffold481 WUBlastX DNA_Kolobok-IS4 17915 18469 81 + . . scaffold481 WUBlastX DNA_IS4EU 18065 18457 85 + . . scaffold481 WUBlastX DNA_Kolobok-IS4 19051 20124 132 + . . scaffold481 WUBlastX DNA_IS4EU 19447 20130 164 + . . scaffold481 TRF Tandem_Repeat 31904 32000 97 + . . scaffold481 TRF Tandem_Repeat 32048 32172 67 + . . scaffold481 TRF Tandem_Repeat 33482 33630 101 + . . scaffold481 GLEAN promoter 39250 40249 0.999878 + . ID=CGI_10027191; scaffold481 GLEAN mRNA 40250 41556 0.999878 + . ID=CGI_10027191; scaffold481 GLEAN mRNA 43598 55574 0.948404 - . ID=CGI_10027192; scaffold481 GLEAN promoter 54621 55620 0.995785 + . ID=CGI_10027193; scaffold481 GLEAN promoter 55575 56574 0.948404 - . ID=CGI_10027192; scaffold481 GLEAN mRNA 55621 73093 0.995785 + . ID=CGI_10027193; scaffold481 TRF Tandem_Repeat 65080 65140 122 + . . scaffold481 WUBlastX LINE_RTE-BovB 75371 75844 189 - . . scaffold481 TRF Tandem_Repeat 75879 75977 182 + . . scaffold481 TRF Tandem_Repeat 76019 76119 103 + . . scaffold481 TRF Tandem_Repeat 77584 77853 167 + . . scaffold481 TRF Tandem_Repeat 77662 77848 153 + . . scaffold481 WUBlastX LINE_RTE-BovB 78495 79067 58 - . . scaffold481 GLEAN mRNA 81280 85535 0.999676 - . ID=CGI_10027194; scaffold481 GLEAN promoter 81791 82790 0.899616 + . ID=CGI_10027195; scaffold481 GLEAN mRNA 82791 90013 0.899616 + . ID=CGI_10027195; scaffold481 GLEAN promoter 85536 86535 0.999676 - . ID=CGI_10027194; scaffold481 GLEAN promoter 89077 90076 0.999984 + . ID=CGI_10027196; scaffold481 GLEAN mRNA 90077 90466 0.999984 + . ID=CGI_10027196; scaffold481 TRF Tandem_Repeat 95289 95319 62 + . . scaffold481 TRF Tandem_Repeat 96197 96274 93 + . . scaffold481 TRF Tandem_Repeat 96197 96274 111 + . . scaffold481 GLEAN mRNA 103042 105656 1 - . ID=CGI_10027197; scaffold481 GLEAN promoter 105657 106656 1 - . ID=CGI_10027197; scaffold481 TRF Tandem_Repeat 115908 115994 104 + . . scaffold481 TRF Tandem_Repeat 116081 116291 145 + . . scaffold481 TRF Tandem_Repeat 116290 116449 176 + . . scaffold481 TRF Tandem_Repeat 124164 124203 80 + . . scaffold481 TRF Tandem_Repeat 126767 126907 138 + . . scaffold481 GLEAN mRNA 133454 137866 1 - . ID=CGI_10027198; scaffold481 GLEAN promoter 137867 138866 1 - . ID=CGI_10027198; scaffold481 GLEAN mRNA 150649 151985 0.840979 - . ID=CGI_10027199; scaffold481 GLEAN promoter 151986 152985 0.840979 - . ID=CGI_10027199; scaffold481 GLEAN promoter 153039 154038 0.997431 + . ID=CGI_10027200; scaffold481 GLEAN mRNA 154039 177807 0.997431 + . ID=CGI_10027200; scaffold481 TRF Tandem_Repeat 165637 165710 76 + . . scaffold481 TRF Tandem_Repeat 165637 165697 83 + . . scaffold481 TRF Tandem_Repeat 165638 165707 67 + . . scaffold481 TRF Tandem_Repeat 170046 170112 127 + . . scaffold481 TRF Tandem_Repeat 170052 170112 77 + . . scaffold481 TRF Tandem_Repeat 170275 170985 1087 + . . scaffold481 TRF Tandem_Repeat 176887 176949 126 + . . scaffold481 TRF Tandem_Repeat 177016 177056 73 + . . scaffold481 TRF Tandem_Repeat 188776 190101 943 + . . scaffold481 WUBlastX LTR_Gypsy 191018 191125 43 + . . scaffold481 WUBlastX LTR_Gypsy 191096 191416 48 + . . scaffold481 WUBlastX LTR_Gypsy 194116 194706 48 + . . scaffold481 WUBlastX LTR_Gypsy 194209 194733 234 + . . scaffold481 WUBlastX LTR_Gypsy 194757 194822 21 + . . scaffold481 GLEAN promoter 197662 198661 0.999372 + . ID=CGI_10027201; scaffold481 TRF Tandem_Repeat 197820 197863 52 + . . scaffold481 GLEAN mRNA 198662 199033 0.999372 + . ID=CGI_10027201; scaffold481 WUBlastX DNA_Harbinger 211688 211966 134 + . . scaffold481 WUBlastX DNA_TcMar-Tigge 212308 212517 92 + . . scaffold481 WUBlastX DNA_TcMar-Pogo 212338 212616 81 + . . scaffold481 WUBlastX DNA_TcMar-Pogo 212350 212529 97 + . . scaffold481 WUBlastX DNA_TcMar-Tigge 212362 212706 62 + . . scaffold481 WUBlastX DNA_TcMar-Pogo 212362 212508 99 + . . scaffold481 WUBlastX DNA_hAT-Tip100 212641 213012 53 - . . scaffold481 TRF Tandem_Repeat 216364 216390 54 + . . scaffold481 WUBlastX LTR_Gypsy 217126 217272 36 - . . scaffold481 WUBlastX LTR_Gypsy 217135 217245 50 - . . scaffold481 WUBlastX LTR_Gypsy 217500 217619 20 - . . scaffold481 WUBlastX LTR_Gypsy 218881 218904 21 - . . scaffold481 WUBlastX LTR_Gypsy 218898 218942 22 - . . scaffold481 WUBlastX LTR_Gypsy 218912 219181 112 - . . scaffold481 WUBlastX LTR_Gypsy 218912 219124 113 - . . scaffold481 WUBlastX LTR_Gypsy 218951 219121 131 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 218954 219274 92 - . . scaffold481 GLEAN mRNA 223109 223450 0.999996 - . ID=CGI_10027202; scaffold481 GLEAN promoter 223451 224450 0.999996 - . ID=CGI_10027202; scaffold481 WUBlastX LTR_Gypsy-Cigr 224449 224847 164 - . . scaffold481 WUBlastX LTR_Gypsy 224452 224961 84 - . . scaffold481 WUBlastX LTR_Gypsy 225130 225954 117 - . . scaffold481 WUBlastX LTR_Gypsy 225346 225951 121 - . . scaffold481 WUBlastX LTR_Gypsy 225523 225990 309 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 225978 226751 373 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 226203 227789 765 - . . scaffold481 WUBlastX LTR_Gypsy 227743 227868 20 - . . scaffold481 WUBlastX LTR_Gypsy 227812 228153 52 - . . scaffold481 WUBlastX LTR_Gypsy 227896 228555 94 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 228235 228630 49 - . . scaffold481 TRF Tandem_Repeat 234648 234683 72 + . . scaffold481 GLEAN promoter 237504 238503 0.999372 + . ID=CGI_10027203; scaffold481 GLEAN mRNA 238504 238692 0.999372 + . ID=CGI_10027203; scaffold481 WUBlastX LTR_Gypsy 239051 239389 38 - . . scaffold481 WUBlastX LTR_Gypsy 239114 239587 113 - . . scaffold481 WUBlastX LTR_Gypsy 239249 239578 123 - . . scaffold481 WUBlastX LTR_Gypsy 239384 239590 181 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 239584 240312 490 - . . scaffold481 WUBlastX LTR_Gypsy 239584 240198 526 - . . scaffold481 WUBlastX LTR_Gypsy 240362 240562 21 - . . scaffold481 WUBlastX LTR_Gypsy 240401 241048 110 - . . scaffold481 WUBlastX LTR_Gypsy 240767 241126 67 - . . scaffold481 WUBlastX LTR_Gypsy 240905 241168 29 - . . scaffold481 WUBlastX LTR_Gypsy 241222 241398 20 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 241321 242223 81 - . . scaffold481 WUBlastX LTR_Gypsy 241636 242193 138 - . . scaffold481 TRF Tandem_Repeat 249926 250190 354 + . . scaffold481 GLEAN mRNA 250433 254719 0.999676 - . ID=CGI_10027204; scaffold481 GLEAN promoter 254117 255116 0.999676 + . ID=CGI_10027205; scaffold481 GLEAN promoter 254720 255719 0.999676 - . ID=CGI_10027204; scaffold481 GLEAN mRNA 255117 265653 0.999676 + . ID=CGI_10027205; scaffold481 TRF Tandem_Repeat 271692 271810 193 + . . scaffold481 TRF Tandem_Repeat 277838 277902 76 + . . scaffold481 TRF Tandem_Repeat 279909 279966 64 + . . scaffold481 TRF Tandem_Repeat 279924 279963 66 + . . scaffold481 TRF Tandem_Repeat 289855 289896 84 + . . scaffold481 TRF Tandem_Repeat 292189 292669 660 + . . scaffold481 TRF Tandem_Repeat 292208 292838 252 + . . scaffold481 TRF Tandem_Repeat 292684 292838 121 + . . scaffold481 GLEAN mRNA 294396 301064 0.93764 - . ID=CGI_10027206; scaffold481 GLEAN promoter 301065 302064 0.93764 - . ID=CGI_10027206; scaffold481 TRF Tandem_Repeat 305413 305482 122 + . . scaffold481 TRF Tandem_Repeat 305944 305980 74 + . . scaffold481 TRF Tandem_Repeat 312902 312948 53 + . . scaffold481 TRF Tandem_Repeat 313271 313346 136 + . . scaffold481 WUBlastX LINE_RTE-X 316167 316385 27 + . . scaffold481 WUBlastX LINE_RTE-X 316296 316385 50 + . . scaffold481 WUBlastX LINE_RTE-X 316384 317085 155 + . . scaffold481 WUBlastX LINE_RTE-X 316390 316953 165 + . . scaffold481 TRF Tandem_Repeat 317114 317173 57 + . . scaffold481 GLEAN mRNA 321166 340974 0.998676 - . ID=CGI_10027207; scaffold481 TRF Tandem_Repeat 327470 327527 57 + . . scaffold481 TRF Tandem_Repeat 327470 327518 53 + . . scaffold481 TRF Tandem_Repeat 327979 328264 369 + . . scaffold481 TRF Tandem_Repeat 327998 328196 90 + . . scaffold481 TRF Tandem_Repeat 334446 334529 168 + . . scaffold481 TRF Tandem_Repeat 336242 336296 110 + . . scaffold481 GLEAN promoter 340975 341974 0.998676 - . ID=CGI_10027207; scaffold481 TRF Tandem_Repeat 344188 344238 102 + . . scaffold481 GLEAN mRNA 351612 353616 0.999997 - . ID=CGI_10027208; scaffold481 GLEAN promoter 353617 354616 0.999997 - . ID=CGI_10027208; scaffold481 TRF Tandem_Repeat 355578 355834 90 + . . scaffold481 TRF Tandem_Repeat 355698 355794 61 + . . scaffold481 GLEAN mRNA 359793 370596 0.933203 - . ID=CGI_10027209; scaffold481 TRF Tandem_Repeat 360463 360514 86 + . . scaffold481 TRF Tandem_Repeat 365055 365450 517 + . . scaffold481 TRF Tandem_Repeat 365416 365599 251 + . . scaffold481 GLEAN promoter 370220 371219 0.990926 + . ID=CGI_10027210; scaffold481 GLEAN promoter 370597 371596 0.933203 - . ID=CGI_10027209; scaffold481 GLEAN mRNA 371220 375291 0.990926 + . ID=CGI_10027210; scaffold481 TRF Tandem_Repeat 383018 383061 88 + . . scaffold481 WUBlastX LTR_Pao 383994 385592 875 - . . scaffold481 WUBlastX LTR_Pao 385621 388863 1795 - . . scaffold481 WUBlastX LTR_Pao 386455 389295 931 - . . scaffold481 TRF Tandem_Repeat 394754 394784 62 + . . scaffold481 TRF Tandem_Repeat 394782 394824 77 + . . scaffold481 TRF Tandem_Repeat 397359 397437 149 + . . scaffold481 TRF Tandem_Repeat 400090 400183 145 + . . scaffold481 TRF Tandem_Repeat 406884 406925 84 + . . scaffold481 GLEAN promoter 408230 409229 0.558395 + . ID=CGI_10027211; scaffold481 GLEAN mRNA 409230 409745 0.558395 + . ID=CGI_10027211; scaffold481 GLEAN mRNA 415798 427392 1 - . ID=CGI_10027212; scaffold481 TRF Tandem_Repeat 422182 423099 1292 + . . scaffold481 TRF Tandem_Repeat 424222 425345 1640 + . . scaffold481 TRF Tandem_Repeat 425369 425422 81 + . . scaffold481 TRF Tandem_Repeat 425369 425427 55 + . . scaffold481 TRF Tandem_Repeat 425369 425427 64 + . . scaffold481 TRF Tandem_Repeat 426306 426623 411 + . . scaffold481 GLEAN promoter 427393 428392 1 - . ID=CGI_10027212; scaffold481 GLEAN promoter 427441 428440 0.639804 + . ID=CGI_10027213; scaffold481 GLEAN mRNA 428441 433765 0.639804 + . ID=CGI_10027213; scaffold481 TRF Tandem_Repeat 430775 430819 90 + . . scaffold481 TRF Tandem_Repeat 435693 435734 66 + . . scaffold481 TRF Tandem_Repeat 435758 436666 1266 + . . scaffold481 GLEAN promoter 437983 438982 0.69447 + . ID=CGI_10027214; scaffold481 GLEAN mRNA 438983 439717 0.69447 + . ID=CGI_10027214; scaffold481 GLEAN mRNA 440272 441462 1 - . ID=CGI_10027215; scaffold481 GLEAN promoter 441463 442462 1 - . ID=CGI_10027215; scaffold481 TRF Tandem_Repeat 446667 446723 114 + . . scaffold481 TRF Tandem_Repeat 448545 448585 82 + . . scaffold481 GLEAN promoter 450206 451205 0.811439 + . ID=CGI_10027216; scaffold481 GLEAN mRNA 451206 462361 0.811439 + . ID=CGI_10027216; scaffold481 TRF Tandem_Repeat 456544 456616 69 + . . scaffold481 TRF Tandem_Repeat 456545 456614 70 + . . scaffold481 TRF Tandem_Repeat 457585 457637 106 + . . scaffold481 GLEAN mRNA 467943 468329 0.529596 - . ID=CGI_10027217; scaffold481 GLEAN promoter 468330 469329 0.529596 - . ID=CGI_10027217; scaffold481 GLEAN mRNA 469196 478883 0.578518 - . ID=CGI_10027218; scaffold481 GLEAN promoter 478884 479883 0.578518 - . ID=CGI_10027218; scaffold481 TRF Tandem_Repeat 482812 482842 62 + . . scaffold481 GLEAN mRNA 499006 499593 0.995343 - . ID=CGI_10027219; scaffold481 GLEAN promoter 499594 500593 0.995343 - . ID=CGI_10027219; scaffold481 TRF Tandem_Repeat 503930 504018 142 + . . scaffold481 GLEAN mRNA 504546 505256 0.993872 - . ID=CGI_10027220; scaffold481 TRF Tandem_Repeat 504627 504722 147 + . . scaffold481 GLEAN promoter 505257 506256 0.993872 - . ID=CGI_10027220; scaffold481 GLEAN mRNA 507050 517643 0.993196 - . ID=CGI_10027221; scaffold481 TRF Tandem_Repeat 515003 515028 52 + . . scaffold481 GLEAN promoter 517644 518643 0.993196 - . ID=CGI_10027221; scaffold481 GLEAN mRNA 517941 521195 0.541627 - . ID=CGI_10027222; scaffold481 TRF Tandem_Repeat 519679 519763 152 + . . scaffold481 GLEAN promoter 521196 522195 0.541627 - . ID=CGI_10027222; scaffold481 TRF Tandem_Repeat 527442 527493 104 + . . scaffold481 GLEAN promoter 528613 529612 0.728097 + . ID=CGI_10027223; scaffold481 GLEAN mRNA 529613 543329 0.728097 + . ID=CGI_10027223; scaffold481 TRF Tandem_Repeat 535610 537183 1978 + . . scaffold481 GLEAN mRNA 547205 559325 0.541632 - . ID=CGI_10027224; scaffold481 TRF Tandem_Repeat 549422 549453 64 + . . scaffold481 GLEAN promoter 559326 560325 0.541632 - . ID=CGI_10027224; scaffold481 GLEAN mRNA 564527 580694 0.999885 - . ID=CGI_10027225; scaffold481 TRF Tandem_Repeat 577116 577918 844 + . . scaffold481 TRF Tandem_Repeat 577925 578280 440 + . . scaffold481 GLEAN promoter 580695 581694 0.999885 - . ID=CGI_10027225; scaffold481 GLEAN mRNA 581140 594076 0.695901 - . ID=CGI_10027226; scaffold481 TRF Tandem_Repeat 583201 583247 76 + . . scaffold481 TRF Tandem_Repeat 584337 584647 424 + . . scaffold481 TRF Tandem_Repeat 589780 589812 66 + . . scaffold481 GLEAN promoter 594077 595076 0.695901 - . ID=CGI_10027226; scaffold481 TRF Tandem_Repeat 599437 600961 1436 + . . scaffold481 TRF Tandem_Repeat 599437 599667 57 + . . scaffold481 GLEAN mRNA 614316 620545 1 - . ID=CGI_10027227; scaffold481 GLEAN promoter 620546 621545 1 - . ID=CGI_10027227; scaffold481 GLEAN promoter 621608 622607 0.864758 + . ID=CGI_10027228; scaffold481 GLEAN mRNA 622608 626662 0.864758 + . ID=CGI_10027228; scaffold481 TRF Tandem_Repeat 623486 623572 174 + . . scaffold481 TRF Tandem_Repeat 624010 624081 135 + . . scaffold481 GLEAN mRNA 627194 635960 1 - . ID=CGI_10027229; scaffold481 GLEAN promoter 635450 636449 0.999394 + . ID=CGI_10027230; scaffold481 GLEAN promoter 635961 636960 1 - . ID=CGI_10027229; scaffold481 GLEAN mRNA 636450 649991 0.999394 + . ID=CGI_10027230; scaffold481 GLEAN promoter 649337 650336 1 + . ID=CGI_10027231; scaffold481 TRF Tandem_Repeat 650153 650313 254 + . . scaffold481 GLEAN mRNA 650337 660966 1 + . ID=CGI_10027231; scaffold481 GLEAN promoter 660200 661199 0.995695 + . ID=CGI_10027232; scaffold481 GLEAN mRNA 661200 686862 0.995695 + . ID=CGI_10027232; scaffold481 TRF Tandem_Repeat 670304 670570 489 + . . scaffold481 TRF Tandem_Repeat 674343 674388 92 + . . scaffold481 TRF Tandem_Repeat 677817 677863 94 + . . scaffold481 TRF Tandem_Repeat 681548 681582 70 + . . scaffold481 WUBlastX DNA_TcMar-m44 685266 685430 29 + . . scaffold481 WUBlastX DNA_TcMar-m44 685678 686607 583 + . . scaffold481 TRF Tandem_Repeat 688436 688891 765 + . . scaffold481 GLEAN promoter 691356 692355 0.999998 + . ID=CGI_10027233; scaffold481 GLEAN mRNA 692356 701842 0.999998 + . ID=CGI_10027233; scaffold481 TRF Tandem_Repeat 698080 698104 50 + . . scaffold481 GLEAN mRNA 705457 712198 0.593391 - . ID=CGI_10027234; scaffold481 GLEAN promoter 712199 713198 0.593391 - . ID=CGI_10027234; scaffold481 GLEAN promoter 716173 717172 0.820423 + . ID=CGI_10027235; scaffold481 GLEAN mRNA 717173 750597 0.820423 + . ID=CGI_10027235; scaffold481 TRF Tandem_Repeat 725735 725772 60 + . . scaffold481 TRF Tandem_Repeat 725818 726603 910 + . . scaffold481 TRF Tandem_Repeat 727549 727695 73 + . . scaffold481 TRF Tandem_Repeat 727611 727740 93 + . . scaffold481 TRF Tandem_Repeat 735093 735342 227 + . . scaffold481 GLEAN mRNA 739525 741720 0.651071 - . ID=CGI_10027236; scaffold481 GLEAN promoter 741721 742720 0.651071 - . ID=CGI_10027236; scaffold481 TRF Tandem_Repeat 750190 750248 111 + . . scaffold481 GLEAN promoter 755030 756029 1 + . ID=CGI_10027237; scaffold481 GLEAN mRNA 756030 758760 1 + . ID=CGI_10027237; scaffold481 TRF Tandem_Repeat 757884 757929 92 + . . scaffold481 GLEAN promoter 758558 759557 0.776163 + . ID=CGI_10027239; scaffold481 GLEAN mRNA 759289 759468 0.618181 - . ID=CGI_10027238; scaffold481 GLEAN promoter 759469 760468 0.618181 - . ID=CGI_10027238; scaffold481 GLEAN mRNA 759558 760519 0.776163 + . ID=CGI_10027239; scaffold481 TRF Tandem_Repeat 763412 763474 126 + . . scaffold481 TRF Tandem_Repeat 763994 764061 136 + . . scaffold481 GLEAN promoter 766056 767055 0.999186 + . ID=CGI_10027240; scaffold481 GLEAN mRNA 767056 771356 0.999186 + . ID=CGI_10027240; scaffold481 TRF Tandem_Repeat 771011 771057 94 + . . scaffold481 GLEAN promoter 772483 773482 1 + . ID=CGI_10027241; scaffold481 GLEAN mRNA 773483 775932 1 + . ID=CGI_10027241; scaffold481 GLEAN promoter 775922 776921 1 + . ID=CGI_10027242; scaffold481 GLEAN mRNA 776922 780605 1 + . ID=CGI_10027242; scaffold481 TRF Tandem_Repeat 779623 779647 50 + . . scaffold481 TRF Tandem_Repeat 793025 793064 80 + . . scaffold481 GLEAN mRNA 793762 794175 0.996197 - . ID=CGI_10027243; scaffold481 GLEAN promoter 794176 795175 0.996197 - . ID=CGI_10027243; scaffold481 GLEAN promoter 797399 798398 0.499675 + . ID=CGI_10027244; scaffold481 GLEAN mRNA 798399 811532 0.499675 + . ID=CGI_10027244; scaffold481 TRF Tandem_Repeat 799491 799521 62 + . . scaffold481 TRF Tandem_Repeat 801018 801103 165 + . . scaffold481 TRF Tandem_Repeat 805694 805814 163 + . . scaffold481 TRF Tandem_Repeat 806040 806080 82 + . . scaffold481 TRF Tandem_Repeat 808331 808399 63 + . . scaffold481 TRF Tandem_Repeat 808332 808400 65 + . . scaffold481 TRF Tandem_Repeat 808333 808374 68 + . . scaffold481 GLEAN mRNA 815002 815540 0.999929 - . ID=CGI_10027245; scaffold481 GLEAN promoter 815541 816540 0.999929 - . ID=CGI_10027245; scaffold481 GLEAN mRNA 817682 820845 1 - . ID=CGI_10027246; scaffold481 TRF Tandem_Repeat 820660 820706 85 + . . scaffold481 GLEAN promoter 820846 821845 1 - . ID=CGI_10027246; scaffold481 TRF Tandem_Repeat 830202 830253 104 + . . scaffold481 GLEAN promoter 830206 831205 0.860501 + . ID=CGI_10027247; scaffold481 GLEAN mRNA 831206 860423 0.860501 + . ID=CGI_10027247; scaffold481 TRF Tandem_Repeat 835274 835310 65 + . . scaffold481 GLEAN mRNA 862516 875653 0.992953 - . ID=CGI_10027248; scaffold481 TRF Tandem_Repeat 864620 864812 89 + . . scaffold481 TRF Tandem_Repeat 866011 866071 122 + . . scaffold481 GLEAN promoter 867902 868901 0.647281 + . ID=CGI_10027249; scaffold481 GLEAN mRNA 868902 869417 0.647281 + . ID=CGI_10027249; scaffold481 TRF Tandem_Repeat 872051 872101 66 + . . scaffold481 TRF Tandem_Repeat 872051 872101 84 + . . scaffold481 GLEAN promoter 875654 876653 0.992953 - . ID=CGI_10027248; scaffold481 GLEAN promoter 880361 881360 1 + . ID=CGI_10027250; scaffold481 GLEAN mRNA 881361 882043 1 + . ID=CGI_10027250; scaffold481 GLEAN mRNA 882601 884863 0.639212 - . ID=CGI_10027251; scaffold481 GLEAN promoter 884864 885863 0.639212 - . ID=CGI_10027251; scaffold481 GLEAN promoter 893897 894896 0.997818 + . ID=CGI_10027252; scaffold481 TRF Tandem_Repeat 894529 894560 64 + . . scaffold481 GLEAN mRNA 894897 896425 0.997818 + . ID=CGI_10027252; scaffold481 TRF Tandem_Repeat 901301 901350 100 + . . scaffold481 GLEAN promoter 901801 902800 0.99879 + . ID=CGI_10027253; scaffold481 GLEAN mRNA 902801 914707 0.99879 + . ID=CGI_10027253; scaffold481 TRF Tandem_Repeat 905265 905298 68 + . . scaffold481 TRF Tandem_Repeat 913080 913150 69 + . . scaffold481 TRF Tandem_Repeat 917327 917362 72 + . . scaffold481 TRF Tandem_Repeat 921299 921450 270 + . . scaffold481 GLEAN mRNA 923538 933329 0.800642 - . ID=CGI_10027254; scaffold481 TRF Tandem_Repeat 926037 926062 52 + . . scaffold481 GLEAN promoter 933330 934329 0.800642 - . ID=CGI_10027254; scaffold481 TRF Tandem_Repeat 937052 937090 53 + . . scaffold481 TRF Tandem_Repeat 947061 947095 61 + . . scaffold481 GLEAN mRNA 956926 957141 0.955521 - . ID=CGI_10027255; scaffold481 GLEAN promoter 957142 958141 0.955521 - . ID=CGI_10027255; scaffold481 WUBlastX LTR_Gypsy 959574 959684 51 - . . scaffold481 WUBlastX LTR_Gypsy 959605 959985 88 - . . scaffold481 WUBlastX LTR_Gypsy 959671 961164 439 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 960464 961513 318 - . . scaffold481 WUBlastX LTR_Gypsy 961169 961597 278 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 961889 962107 21 - . . scaffold481 WUBlastX LTR_Gypsy 961958 962227 27 - . . scaffold481 WUBlastX LTR_Gypsy 961988 962107 27 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 962012 962122 51 - . . scaffold481 WUBlastX LTR_Gypsy 962012 962143 39 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 962235 962438 28 - . . scaffold481 WUBlastX LTR_Gypsy-Cigr 962419 962802 30 - . . scaffold481 WUBlastX LTR_Gypsy 962503 962799 60 - . . scaffold481 TRF Tandem_Repeat 973310 973360 65 + . . scaffold481 TRF Tandem_Repeat 975364 975411 53 + . . scaffold481 WUBlastX DNA_TcMar-Tc1 985024 985446 218 - . . scaffold481 GLEAN mRNA 993684 999974 0.430451 - . ID=CGI_10027256; scaffold481 TRF Tandem_Repeat 997607 997632 52 + . . scaffold481 GLEAN promoter 999975 1000974 0.430451 - . ID=CGI_10027256; scaffold481 WUBlastX DNA_Maverick 1003421 1003726 130 + . . scaffold481 WUBlastX DNA_Maverick 1003702 1004031 110 + . . scaffold481 WUBlastX DNA_Maverick 1003825 1004031 143 + . . scaffold481 WUBlastX DNA_Kolobok 1005707 1005844 46 + . . scaffold481 WUBlastX DNA_Kolobok 1006082 1006603 212 - . . scaffold481 TRF Tandem_Repeat 1011560 1011604 72 + . . scaffold481 TRF Tandem_Repeat 1021743 1021786 70 + . . scaffold481 GLEAN mRNA 1028280 1036201 0.63556 - . ID=CGI_10027257; scaffold481 TRF Tandem_Repeat 1030377 1030438 115 + . . scaffold481 GLEAN promoter 1036202 1037201 0.63556 - . ID=CGI_10027257; scaffold481 WUBlastX DNA_TcMar-ISRm1 1037906 1038025 56 - . . scaffold481 GLEAN mRNA 1037973 1041355 0.978909 - . ID=CGI_10027258; scaffold481 WUBlastX DNA_TcMar-ISRm1 1038033 1038278 33 - . . scaffold481 GLEAN promoter 1041356 1042355 0.978909 - . ID=CGI_10027258; scaffold481 WUBlastX LINE_RTE-X 1041609 1041929 51 + . . scaffold481 WUBlastX LINE_RTE-X 1041675 1041908 67 + . . scaffold481 WUBlastX LINE_RTE-X 1041675 1041860 73 + . . scaffold481 TRF Tandem_Repeat 1043407 1043445 78 + . . scaffold481 GLEAN mRNA 1047969 1057631 0.5 - . ID=CGI_10027259; scaffold481 WUBlastX DNA_hAT-Tip100 1053896 1053982 21 + . . scaffold481 WUBlastX DNA_hAT-Tip100 1053921 1054268 45 + . . scaffold481 WUBlastX DNA_hAT-Tip100 1054023 1054388 85 + . . scaffold481 TRF Tandem_Repeat 1054669 1054749 135 + . . scaffold481 GLEAN promoter 1057632 1058631 0.5 - . ID=CGI_10027259; scaffold481 TRF Tandem_Repeat 1060926 1060951 52 + . . scaffold481 GLEAN mRNA 1061832 1065462 0.999999 - . ID=CGI_10027260; scaffold481 GLEAN promoter 1065463 1066462 0.999999 - . ID=CGI_10027260; scaffold481 GLEAN promoter 1066271 1067270 0.999364 + . ID=CGI_10027261; scaffold481 GLEAN mRNA 1067271 1084850 0.999364 + . ID=CGI_10027261; scaffold481 WUBlastX LTR_Copia 1080699 1080833 40 + . . scaffold481 GLEAN mRNA 1088292 1089230 1 - . ID=CGI_10027262; scaffold481 GLEAN promoter 1088692 1089691 1 + . ID=CGI_10027263; scaffold481 GLEAN promoter 1089231 1090230 1 - . ID=CGI_10027262; scaffold481 GLEAN mRNA 1089692 1101177 1 + . ID=CGI_10027263; scaffold481 TRF Tandem_Repeat 1090102 1090154 106 + . . scaffold481 TRF Tandem_Repeat 1101470 1101521 104 + . . scaffold481 GLEAN mRNA 1121464 1128677 1 - . ID=CGI_10027264; scaffold481 TRF Tandem_Repeat 1121644 1121684 82 + . . scaffold481 GLEAN promoter 1128678 1129677 1 - . ID=CGI_10027264; scaffold481 TRF Tandem_Repeat 1133955 1134838 1088 + . . scaffold481 GLEAN promoter 1144075 1145074 0.934445 + . ID=CGI_10027265; scaffold481 GLEAN mRNA 1145075 1151438 0.934445 + . ID=CGI_10027265; scaffold481 TRF Tandem_Repeat 1155816 1156004 278 + . . scaffold481 TRF Tandem_Repeat 1165002 1165030 58 + . . scaffold481 TRF Tandem_Repeat 1176018 1176074 114 + . . scaffold481 TRF Tandem_Repeat 1176403 1176451 98 + . . scaffold481 WUBlastX LTR_Ngaro 1180986 1181387 55 + . . scaffold481 WUBlastX LTR_Ngaro 1181046 1181354 104 + . . scaffold481 WUBlastX LTR_Ngaro 1181614 1181682 34 + . . scaffold481 WUBlastX LTR_Ngaro 1181651 1181755 49 + . . scaffold481 WUBlastX LTR_Ngaro 1181687 1181755 50 + . . scaffold481 WUBlastX LTR_Ngaro 1181734 1182822 841 + . . scaffold481 WUBlastX LTR_Ngaro 1182780 1183076 222 + . . scaffold481 WUBlastX LTR_Ngaro 1183073 1183996 67 + . . scaffold481 WUBlastX LTR_Ngaro 1183493 1183984 77 + . . scaffold481 TRF Tandem_Repeat 1185890 1185924 52 + . . scaffold481 TRF Tandem_Repeat 1187353 1187385 57 + . . scaffold481 WUBlastX DNA_Harbinger 1189142 1189555 86 + . . scaffold481 GLEAN promoter 1197314 1198313 0.199726 + . ID=CGI_10027266; scaffold481 GLEAN mRNA 1198314 1235626 0.199726 + . ID=CGI_10027266; scaffold481 WUBlastX LTR_Gypsy 1198941 1199468 103 + . . scaffold481 WUBlastX LINE_L2 1208958 1209881 88 - . . scaffold481 WUBlastX LINE_L2 1209299 1209541 98 - . . scaffold481 WUBlastX LINE_CR1 1209726 1210037 34 - . . scaffold481 WUBlastX LINE_L2 1209765 1209902 62 - . . scaffold481 WUBlastX DNA_Crypton 1210676 1210969 70 + . . scaffold481 WUBlastX DNA_Crypton 1211520 1211816 74 + . . scaffold481 WUBlastX DNA_Sola 1213639 1214187 38 + . . scaffold481 WUBlastX DNA_Sola 1214346 1215020 111 + . . scaffold481 WUBlastX LINE_L2 1216164 1216901 173 - . . scaffold481 WUBlastX LINE_L2 1216305 1216877 209 - . . scaffold481 WUBlastX LINE_L2 1216428 1217159 174 - . . scaffold481 WUBlastX LINE_L2 1216428 1216892 291 - . . scaffold481 WUBlastX LINE_L2 1216428 1216985 256 - . . scaffold481 WUBlastX LINE_L2 1216984 1217247 99 - . . scaffold481 WUBlastX LINE_RTE-X 1217188 1217259 20 - . . scaffold481 WUBlastX LTR_Copia 1217687 1218016 25 - . . scaffold481 WUBlastX LTR_Gypsy 1217774 1218256 103 - . . scaffold481 WUBlastX LTR_Gypsy 1218051 1219280 299 - . . scaffold481 WUBlastX LTR_Gypsy 1218255 1219388 840 - . . scaffold481 WUBlastX LTR_Gypsy 1219310 1220215 385 - . . scaffold481 WUBlastX LTR_Gypsy 1219310 1219873 562 - . . scaffold481 WUBlastX DNA_IS4EU 1222683 1222805 49 + . . scaffold481 WUBlastX DNA_IS4EU 1222899 1223114 50 + . . scaffold481 WUBlastX DNA_IS4EU 1222923 1223102 76 + . . scaffold481 WUBlastX DNA_IS4EU 1223253 1224059 359 - . . scaffold481 WUBlastX LTR_Gypsy 1225973 1226578 134 - . . scaffold481 WUBlastX LTR_Gypsy 1226105 1227499 798 - . . scaffold481 WUBlastX LTR_Gypsy 1227495 1227722 139 - . . scaffold481 WUBlastX LTR_Gypsy 1227733 1227825 62 - . . scaffold481 WUBlastX LINE_L2 1229090 1229233 41 - . . scaffold481 WUBlastX LINE_L2 1229223 1229483 37 - . . scaffold481 WUBlastX LINE_L2 1229452 1229664 94 - . . scaffold481 WUBlastX LINE_L2 1229515 1229688 98 - . . scaffold481 WUBlastX LINE_L2 1229536 1229733 75 - . . scaffold481 WUBlastX LINE_L1-Tx1 1234419 1234721 76 + . . scaffold481 WUBlastX LINE_CR1 1234669 1234854 74 + . . scaffold481 WUBlastX LINE_L1-Tx1 1235715 1236032 29 + . . scaffold481 WUBlastX LINE_L1 1235766 1236032 41 + . . scaffold481 WUBlastX LINE_L1 1235823 1236032 60 + . . scaffold481 WUBlastX LINE_L1-Tx1 1236053 1236430 61 + . . scaffold481 WUBlastX LINE_L1-Tx1 1238813 1239082 82 + . . scaffold481 WUBlastX LINE_L1-Tx1 1238864 1239085 121 + . . scaffold481 WUBlastX LINE_L1-Tx1 1239061 1239180 89 + . . scaffold481 WUBlastX LINE_L1-Tx1 1239198 1239716 141 + . . scaffold481 WUBlastX LINE_L1-Tx1 1239730 1240194 105 + . . scaffold481 WUBlastX LINE_L1-Tx1 1239817 1240197 133 + . . scaffold481 WUBlastX LINE_L1 1240661 1240774 29 + . . scaffold481 WUBlastX DNA_IS4EU 1243965 1244417 221 + . . scaffold481 WUBlastX DNA_IS4EU 1244420 1244599 70 + . . scaffold481 TRF Tandem_Repeat 1245250 1246270 1580 + . . scaffold481 WUBlastX DNA_Sola 1251596 1251901 94 - . . scaffold481 WUBlastX DNA_Sola 1251897 1252220 21 - . . scaffold481 WUBlastX DNA_Sola 1252876 1253001 74 - . . scaffold481 WUBlastX DNA_Sola 1252879 1253034 35 - . . scaffold481 WUBlastX DNA_Sola 1253323 1253649 130 - . . scaffold481 WUBlastX DNA_Sola 1253631 1253870 157 - . . scaffold481 WUBlastX DNA_Sola 1253679 1254002 62 - . . scaffold481 WUBlastX DNA_Sola 1254985 1255200 72 - . . scaffold481 WUBlastX DNA_Sola 1255500 1256216 232 - . . scaffold481 TRF Tandem_Repeat 1272962 1273034 146 + . . scaffold481 TRF Tandem_Repeat 1273097 1273146 91 + . . scaffold481 TRF Tandem_Repeat 1274615 1274659 90 + . . scaffold481 TRF Tandem_Repeat 1292112 1292154 59 + . . scaffold481 TRF Tandem_Repeat 1312276 1312350 141 + . . scaffold481 WUBlastX LINE_L2 1325545 1326450 335 + . . scaffold481 WUBlastX LINE_L2 1325929 1326567 219 + . . scaffold481 WUBlastX LINE_L2 1327159 1327317 30 + . . scaffold481 WUBlastX LINE_L2 1327335 1328243 308 + . . scaffold481 GLEAN promoter 1331789 1332788 1 + . ID=CGI_10027267; scaffold481 GLEAN mRNA 1332789 1333540 1 + . ID=CGI_10027267; scaffold482 TRF Tandem_Repeat 17313 17556 434 + . . scaffold482 GLEAN promoter 19471 20470 0.999994 + . ID=CGI_10010990; scaffold482 GLEAN mRNA 20471 22033 0.999994 + . ID=CGI_10010990; scaffold482 GLEAN promoter 24916 25915 0.999015 + . ID=CGI_10010991; scaffold482 GLEAN mRNA 25916 39077 0.999015 + . ID=CGI_10010991; scaffold482 GLEAN promoter 40454 41453 0.427398 + . ID=CGI_10010992; scaffold482 GLEAN mRNA 41454 43438 0.427398 + . ID=CGI_10010992; scaffold482 WUBlastX DNA_Kolobok-Hyd 42374 43417 36 + . . scaffold482 WUBlastX DNA_Kolobok-Hyd 42494 42559 45 + . . scaffold482 WUBlastX DNA_Kolobok-Hyd 42641 42871 40 + . . scaffold482 GLEAN promoter 42957 43956 0.625744 + . ID=CGI_10010993; scaffold482 GLEAN mRNA 43957 45248 0.625744 + . ID=CGI_10010993; scaffold482 GLEAN promoter 45703 46702 0.998956 + . ID=CGI_10010994; scaffold482 GLEAN mRNA 46703 88505 0.998956 + . ID=CGI_10010994; scaffold482 TRF Tandem_Repeat 57747 57788 84 + . . scaffold482 TRF Tandem_Repeat 58744 58769 52 + . . scaffold482 TRF Tandem_Repeat 92465 92737 142 + . . scaffold482 GLEAN mRNA 93669 105559 0.999999 - . ID=CGI_10010995; scaffold482 TRF Tandem_Repeat 94119 94154 54 + . . scaffold482 TRF Tandem_Repeat 94648 95066 422 + . . scaffold482 TRF Tandem_Repeat 99045 99083 78 + . . scaffold482 GLEAN promoter 105560 106559 0.999999 - . ID=CGI_10010995; scaffold482 GLEAN promoter 105791 106790 0.887892 + . ID=CGI_10010996; scaffold482 TRF Tandem_Repeat 105907 105990 116 + . . scaffold482 GLEAN mRNA 106791 115709 0.887892 + . ID=CGI_10010996; scaffold482 TRF Tandem_Repeat 110670 110706 74 + . . scaffold482 WUBlastX LINE_RTE-X 112657 112737 29 - . . scaffold482 WUBlastX LINE_RTE-X 112751 113431 37 - . . scaffold482 WUBlastX LINE_RTE-X 113198 113401 51 - . . scaffold482 WUBlastX LINE_RTE-X 113412 113603 27 - . . scaffold482 TRF Tandem_Repeat 113642 113671 51 + . . scaffold482 TRF Tandem_Repeat 116252 116302 102 + . . scaffold482 WUBlastX DNA_IS4EU 138735 139637 121 + . . scaffold482 WUBlastX DNA_Kolobok-IS4 138840 139592 162 + . . scaffold482 TRF Tandem_Repeat 155195 155252 55 + . . scaffold482 WUBlastX LINE_L1-Tx1 167332 168057 38 - . . scaffold482 WUBlastX LINE_L1 168112 168171 24 - . . scaffold482 TRF Tandem_Repeat 171549 171601 106 + . . scaffold482 GLEAN promoter 174304 175303 0.486171 + . ID=CGI_10010998; scaffold482 GLEAN mRNA 175304 175687 0.486171 + . ID=CGI_10010998; scaffold482 WUBlastX LINE_L1 177706 177852 53 + . . scaffold482 GLEAN promoter 181536 182535 1 + . ID=CGI_10010999; scaffold482 GLEAN mRNA 182536 185672 1 + . ID=CGI_10010999; scaffold482 GLEAN promoter 187426 188425 1 + . ID=CGI_10011000; scaffold482 GLEAN mRNA 188426 188974 1 + . ID=CGI_10011000; scaffold482 WUBlastX DNA_IS4EU 188453 188971 74 + . . scaffold482 WUBlastX DNA_IS4EU 188657 188971 120 + . . scaffold482 WUBlastX DNA_Kolobok-IS4 189518 189586 36 + . . scaffold482 TRF Tandem_Repeat 191164 191190 54 + . . scaffold482 TRF Tandem_Repeat 211347 211383 56 + . . scaffold482 GLEAN promoter 212239 213238 0.991247 + . ID=CGI_10011001; scaffold482 GLEAN mRNA 213239 213670 0.991247 + . ID=CGI_10011001; scaffold482 WUBlastX LINE_RTE-X 214120 214368 24 + . . scaffold482 WUBlastX LINE_RTE-X 214201 214368 62 + . . scaffold482 WUBlastX LINE_L2 215049 215702 66 + . . scaffold482 WUBlastX LINE_RTE-X 215232 215723 129 + . . scaffold482 WUBlastX LINE_RTE-X 215310 215723 240 + . . scaffold482 WUBlastX LINE_RTE-X 215717 215863 67 + . . scaffold482 WUBlastX LINE_RTE-X 215869 216594 393 + . . scaffold482 WUBlastX LINE_RTE-X 216633 216953 136 + . . scaffold482 WUBlastX LINE_RTE-X 218194 218505 166 + . . scaffold482 WUBlastX LINE_RTE-X 218194 218607 166 + . . scaffold482 TRF Tandem_Repeat 220514 221110 381 + . . scaffold482 WUBlastX LINE_L2 232792 233226 50 - . . scaffold482 WUBlastX LINE_L2 232984 233220 120 - . . scaffold482 WUBlastX LINE_L2 233187 233546 198 - . . scaffold482 WUBlastX LINE_L2 233537 233794 70 - . . scaffold482 WUBlastX LINE_L2 233555 233758 140 - . . scaffold482 WUBlastX LINE_L2 234003 235172 515 - . . scaffold482 WUBlastX LINE_L2 235159 235803 543 - . . scaffold482 WUBlastX LINE_L2 235833 236582 322 - . . scaffold482 WUBlastX LINE_L2 236602 237411 70 - . . scaffold482 WUBlastX LINE_L2 236614 237273 196 - . . scaffold482 WUBlastX LINE_L2 237200 237505 28 - . . scaffold482 WUBlastX DNA_Crypton 246194 246580 137 - . . scaffold482 WUBlastX DNA_Crypton 246242 246643 98 - . . scaffold482 WUBlastX DNA_Crypton 246753 246944 75 - . . scaffold482 WUBlastX DNA_Crypton 247090 247596 217 - . . scaffold482 TRF Tandem_Repeat 250011 250081 133 + . . scaffold482 TRF Tandem_Repeat 252495 252540 57 + . . scaffold482 TRF Tandem_Repeat 252496 252537 50 + . . scaffold482 TRF Tandem_Repeat 273439 273472 52 + . . scaffold483 WUBlastX LTR_Gypsy 971 2038 67 - . . scaffold483 WUBlastX LTR_Gypsy-Cigr 1286 2053 240 - . . scaffold483 WUBlastX LTR_Gypsy-Cigr 2053 3765 359 - . . scaffold483 WUBlastX LTR_ERV1 3610 3891 30 - . . scaffold483 TRF Tandem_Repeat 9045 9094 100 + . . scaffold483 GLEAN promoter 9460 10459 0.823526 + . ID=CGI_10007746; scaffold483 WUBlastX DNA_Harbinger 9744 9863 47 - . . scaffold483 WUBlastX DNA_Harbinger 10035 10196 99 - . . scaffold483 WUBlastX DNA_Harbinger 10074 10193 126 - . . scaffold483 WUBlastX DNA_Harbinger 10074 10271 65 - . . scaffold483 GLEAN mRNA 10460 12838 0.823526 + . ID=CGI_10007746; scaffold483 WUBlastX DNA_Harbinger 10790 11158 128 - . . scaffold483 WUBlastX DNA_Kolobok 13164 13421 97 + . . scaffold483 WUBlastX DNA_Kolobok 13737 13838 36 - . . scaffold483 WUBlastX DNA_Kolobok 13923 14024 42 - . . scaffold483 WUBlastX DNA_TcMar-Tc1 23273 23482 70 - . . scaffold483 WUBlastX DNA_TcMar-Tc1 23306 23578 80 - . . scaffold483 WUBlastX DNA_TcMar-Tc1 23598 23735 27 - . . scaffold483 WUBlastX DNA_TcMar-Tc1 23619 23921 38 - . . scaffold483 WUBlastX DNA_TcMar-Tc1 23682 23912 40 - . . scaffold483 TRF Tandem_Repeat 24894 24944 59 + . . scaffold483 WUBlastX LINE_L2 25901 26839 445 - . . scaffold483 WUBlastX LINE_L2 26249 26950 139 - . . scaffold483 TRF Tandem_Repeat 32237 32271 70 + . . scaffold483 TRF Tandem_Repeat 34033 34082 100 + . . scaffold483 TRF Tandem_Repeat 42751 42775 50 + . . scaffold483 GLEAN promoter 70910 71909 1 + . ID=CGI_10007747; scaffold483 GLEAN mRNA 71910 76452 1 + . ID=CGI_10007747; scaffold483 TRF Tandem_Repeat 73997 74033 74 + . . scaffold483 GLEAN mRNA 76586 95853 0.378101 - . ID=CGI_10007748; scaffold483 TRF Tandem_Repeat 81866 82110 355 + . . scaffold483 TRF Tandem_Repeat 87212 87270 54 + . . scaffold483 TRF Tandem_Repeat 88764 88912 138 + . . scaffold483 GLEAN promoter 95854 96853 0.378101 - . ID=CGI_10007748; scaffold483 WUBlastX DNA_TcMar-Marin 96016 96216 43 - . . scaffold483 TRF Tandem_Repeat 120589 120711 176 + . . scaffold483 TRF Tandem_Repeat 126268 126320 106 + . . scaffold483 GLEAN mRNA 127029 127259 0.481544 - . ID=CGI_10007749; scaffold483 GLEAN promoter 127260 128259 0.481544 - . ID=CGI_10007749; scaffold483 WUBlastX LINE_RTE-X 132497 132760 134 + . . scaffold483 TRF Tandem_Repeat 132991 133026 72 + . . scaffold483 GLEAN mRNA 133057 140278 0.974667 - . ID=CGI_10007750; scaffold483 GLEAN promoter 140279 141278 0.974667 - . ID=CGI_10007750; scaffold483 GLEAN promoter 140773 141772 0.998273 + . ID=CGI_10007751; scaffold483 GLEAN mRNA 141773 150897 0.998273 + . ID=CGI_10007751; scaffold483 TRF Tandem_Repeat 143037 143070 68 + . . scaffold483 GLEAN mRNA 152695 165153 0.98402 - . ID=CGI_10007752; scaffold483 WUBlastX LINE_RTE-X 160705 160911 24 - . . scaffold483 WUBlastX LINE_RTE-X 160777 160947 41 - . . scaffold483 GLEAN promoter 165154 166153 0.98402 - . ID=CGI_10007752; scaffold483 TRF Tandem_Repeat 167657 168746 1585 + . . scaffold483 TRF Tandem_Repeat 168770 168831 70 + . . scaffold483 TRF Tandem_Repeat 168777 168872 120 + . . scaffold483 GLEAN mRNA 172650 189241 1 - . ID=CGI_10007753; scaffold483 GLEAN promoter 189242 189583 1 - . ID=CGI_10007753; scaffold484 WUBlastX DNA_TcMar-Marin 48 131 58 + . . scaffold484 WUBlastX DNA_TcMar-Marin 81 623 50 + . . scaffold484 WUBlastX DNA_TcMar-Marin 237 602 75 + . . scaffold484 TRF Tandem_Repeat 5745 6127 233 + . . scaffold484 TRF Tandem_Repeat 5808 6140 188 + . . scaffold484 TRF Tandem_Repeat 7209 7234 52 + . . scaffold484 TRF Tandem_Repeat 7238 7337 107 + . . scaffold484 TRF Tandem_Repeat 19126 19169 88 + . . scaffold484 TRF Tandem_Repeat 53644 53685 66 + . . scaffold484 TRF Tandem_Repeat 59162 59198 74 + . . scaffold484 GLEAN promoter 63578 64577 0.836238 + . ID=CGI_10005366; scaffold484 GLEAN mRNA 64578 72452 0.836238 + . ID=CGI_10005366; scaffold484 TRF Tandem_Repeat 80805 81232 775 + . . scaffold484 TRF Tandem_Repeat 90249 90307 118 + . . scaffold484 GLEAN mRNA 100406 107709 1 - . ID=CGI_10005367; scaffold484 TRF Tandem_Repeat 104377 104435 100 + . . scaffold484 GLEAN promoter 107710 108709 1 - . ID=CGI_10005367; scaffold484 TRF Tandem_Repeat 111131 111157 54 + . . scaffold484 TRF Tandem_Repeat 112471 113164 637 + . . scaffold484 GLEAN promoter 116245 117244 0.70702 + . ID=CGI_10005368; scaffold484 GLEAN mRNA 117245 123342 0.70702 + . ID=CGI_10005368; scaffold484 TRF Tandem_Repeat 119390 119429 80 + . . scaffold484 TRF Tandem_Repeat 123791 123834 79 + . . scaffold485 GLEAN mRNA 208 19643 0.650997 - . ID=CGI_10024133; scaffold485 TRF Tandem_Repeat 579 655 57 + . . scaffold485 TRF Tandem_Repeat 581 647 66 + . . scaffold485 TRF Tandem_Repeat 583 655 56 + . . scaffold485 TRF Tandem_Repeat 4435 4474 55 + . . scaffold485 TRF Tandem_Repeat 9720 9758 60 + . . scaffold485 TRF Tandem_Repeat 15806 15847 70 + . . scaffold485 GLEAN promoter 19644 20643 0.650997 - . ID=CGI_10024133; scaffold485 GLEAN promoter 25479 26478 0.999668 + . ID=CGI_10024134; scaffold485 GLEAN mRNA 26479 33311 0.999668 + . ID=CGI_10024134; scaffold485 GLEAN promoter 34402 35401 0.753552 + . ID=CGI_10024135; scaffold485 GLEAN mRNA 35402 45706 0.753552 + . ID=CGI_10024135; scaffold485 TRF Tandem_Repeat 36955 36979 50 + . . scaffold485 TRF Tandem_Repeat 37807 37856 100 + . . scaffold485 TRF Tandem_Repeat 40269 40323 110 + . . scaffold485 GLEAN promoter 44959 45958 0.926223 + . ID=CGI_10024136; scaffold485 GLEAN mRNA 45959 48403 0.926223 + . ID=CGI_10024136; scaffold485 GLEAN mRNA 50911 65152 1 - . ID=CGI_10024137; scaffold485 TRF Tandem_Repeat 62582 63120 724 + . . scaffold485 GLEAN promoter 65153 66152 1 - . ID=CGI_10024137; scaffold485 TRF Tandem_Repeat 70161 70196 72 + . . scaffold485 GLEAN mRNA 76435 77835 0.481465 - . ID=CGI_10024138; scaffold485 GLEAN promoter 76867 77866 0.481962 + . ID=CGI_10024139; scaffold485 GLEAN promoter 77836 78835 0.481465 - . ID=CGI_10024138; scaffold485 GLEAN mRNA 77867 88575 0.481962 + . ID=CGI_10024139; scaffold485 TRF Tandem_Repeat 84678 84729 104 + . . scaffold485 GLEAN promoter 87950 88949 1 + . ID=CGI_10024140; scaffold485 GLEAN mRNA 88950 91386 1 + . ID=CGI_10024140; scaffold485 GLEAN mRNA 92010 94333 0.999714 - . ID=CGI_10024141; scaffold485 GLEAN promoter 92414 93413 0.621158 + . ID=CGI_10024142; scaffold485 GLEAN mRNA 93414 98115 0.621158 + . ID=CGI_10024142; scaffold485 GLEAN promoter 94334 95333 0.999714 - . ID=CGI_10024141; scaffold485 TRF Tandem_Repeat 96029 96056 56 + . . scaffold485 TRF Tandem_Repeat 96879 96988 168 + . . scaffold485 TRF Tandem_Repeat 99106 99138 66 + . . scaffold485 TRF Tandem_Repeat 99200 99228 58 + . . scaffold485 GLEAN mRNA 108071 115562 1 - . ID=CGI_10024143; scaffold485 TRF Tandem_Repeat 112240 112282 63 + . . scaffold485 GLEAN promoter 115159 116158 0.991999 + . ID=CGI_10024144; scaffold485 GLEAN promoter 115563 116562 1 - . ID=CGI_10024143; scaffold485 GLEAN mRNA 116159 120176 0.991999 + . ID=CGI_10024144; scaffold485 GLEAN mRNA 121480 123159 1 - . ID=CGI_10024145; scaffold485 WUBlastX DNA_hAT 121678 123216 274 - . . scaffold485 GLEAN promoter 123160 124159 1 - . ID=CGI_10024145; scaffold485 TRF Tandem_Repeat 128099 128132 68 + . . scaffold485 GLEAN promoter 128796 129795 0.998817 + . ID=CGI_10024146; scaffold485 GLEAN mRNA 129796 133185 0.998817 + . ID=CGI_10024146; scaffold485 WUBlastX LINE_L2 140819 141418 201 - . . scaffold485 TRF Tandem_Repeat 143273 143298 52 + . . scaffold485 TRF Tandem_Repeat 144165 144293 77 + . . scaffold485 TRF Tandem_Repeat 144165 144293 77 + . . scaffold485 TRF Tandem_Repeat 146640 146684 90 + . . scaffold485 GLEAN mRNA 149368 149769 0.999999 - . ID=CGI_10024147; scaffold485 GLEAN promoter 149770 150769 0.999999 - . ID=CGI_10024147; scaffold485 WUBlastX LINE_RTE-X 155461 155973 112 + . . scaffold485 WUBlastX LINE_RTE-X 155994 156650 408 + . . scaffold485 WUBlastX LINE_RTE-X 156632 158167 763 + . . scaffold485 TRF Tandem_Repeat 177371 177417 69 + . . scaffold485 TRF Tandem_Repeat 177650 177730 76 + . . scaffold485 GLEAN promoter 178623 179622 0.770025 + . ID=CGI_10024148; scaffold485 GLEAN mRNA 179623 212915 0.770025 + . ID=CGI_10024148; scaffold485 GLEAN promoter 213119 214118 0.999999 + . ID=CGI_10024149; scaffold485 GLEAN mRNA 214119 215047 0.999999 + . ID=CGI_10024149; scaffold485 TRF Tandem_Repeat 215982 216025 88 + . . scaffold485 GLEAN mRNA 219481 226154 1 - . ID=CGI_10024150; scaffold485 GLEAN promoter 226155 227154 1 - . ID=CGI_10024150; scaffold485 TRF Tandem_Repeat 227955 228030 109 + . . scaffold485 GLEAN promoter 230925 231924 0.999949 + . ID=CGI_10024151; scaffold485 GLEAN mRNA 231925 242419 0.999949 + . ID=CGI_10024151; scaffold485 GLEAN promoter 242925 243924 0.660447 + . ID=CGI_10024152; scaffold485 GLEAN mRNA 243925 255259 0.660447 + . ID=CGI_10024152; scaffold485 TRF Tandem_Repeat 244198 244337 191 + . . scaffold485 TRF Tandem_Repeat 244199 244337 194 + . . scaffold485 TRF Tandem_Repeat 244199 244307 164 + . . scaffold485 TRF Tandem_Repeat 245170 245254 149 + . . scaffold485 TRF Tandem_Repeat 254276 254302 54 + . . scaffold485 GLEAN mRNA 256131 258229 1 - . ID=CGI_10024153; scaffold485 GLEAN promoter 258230 259229 1 - . ID=CGI_10024153; scaffold485 GLEAN promoter 263436 264435 0.996819 + . ID=CGI_10024154; scaffold485 GLEAN mRNA 264436 264902 0.996819 + . ID=CGI_10024154; scaffold485 GLEAN promoter 283170 284169 0.883286 + . ID=CGI_10024155; scaffold485 GLEAN mRNA 284170 290152 0.883286 + . ID=CGI_10024155; scaffold485 TRF Tandem_Repeat 286640 286676 74 + . . scaffold485 TRF Tandem_Repeat 288869 288912 88 + . . scaffold485 WUBlastX LTR_Gypsy 289118 289696 31 + . . scaffold485 WUBlastX LINE_L1 289292 290146 24 + . . scaffold485 TRF Tandem_Repeat 294309 294891 905 + . . scaffold485 TRF Tandem_Repeat 296157 296192 72 + . . scaffold485 TRF Tandem_Repeat 296309 296657 538 + . . scaffold485 TRF Tandem_Repeat 297893 297930 76 + . . scaffold485 GLEAN mRNA 306685 307815 0.999661 - . ID=CGI_10024156; scaffold485 GLEAN promoter 307816 308815 0.999661 - . ID=CGI_10024156; scaffold485 GLEAN promoter 318784 319783 0.841405 + . ID=CGI_10024157; scaffold485 GLEAN mRNA 319784 347278 0.841405 + . ID=CGI_10024157; scaffold485 TRF Tandem_Repeat 338294 339389 1626 + . . scaffold485 GLEAN mRNA 350898 359865 1 - . ID=CGI_10024158; scaffold485 TRF Tandem_Repeat 358511 358668 84 + . . scaffold485 GLEAN promoter 359866 360865 1 - . ID=CGI_10024158; scaffold485 GLEAN promoter 361243 362242 1 + . ID=CGI_10024159; scaffold485 GLEAN mRNA 362243 364242 1 + . ID=CGI_10024159; scaffold485 TRF Tandem_Repeat 364706 364738 66 + . . scaffold485 GLEAN promoter 366876 367875 1 + . ID=CGI_10024160; scaffold485 GLEAN mRNA 367876 368812 1 + . ID=CGI_10024160; scaffold485 GLEAN promoter 369473 370472 0.593391 + . ID=CGI_10024161; scaffold485 GLEAN mRNA 370473 376345 0.593391 + . ID=CGI_10024161; scaffold485 GLEAN promoter 380798 381797 1 + . ID=CGI_10024162; scaffold485 GLEAN mRNA 381798 385928 1 + . ID=CGI_10024162; scaffold485 TRF Tandem_Repeat 384248 384283 72 + . . scaffold485 GLEAN promoter 387251 388250 1 + . ID=CGI_10024163; scaffold485 GLEAN mRNA 388251 389374 1 + . ID=CGI_10024163; scaffold485 TRF Tandem_Repeat 394574 396351 2419 + . . scaffold485 TRF Tandem_Repeat 399406 399445 80 + . . scaffold485 GLEAN mRNA 400250 400429 0.733493 - . ID=CGI_10024164; scaffold485 GLEAN promoter 400430 401429 0.733493 - . ID=CGI_10024164; scaffold485 TRF Tandem_Repeat 403262 403309 96 + . . scaffold485 GLEAN promoter 405248 406247 0.970475 + . ID=CGI_10024165; scaffold485 GLEAN mRNA 406248 406961 0.970475 + . ID=CGI_10024165; scaffold485 WUBlastX LINE_RTE-X 417777 418082 175 + . . scaffold485 WUBlastX LINE_RTE-X 417780 418217 141 + . . scaffold485 TRF Tandem_Repeat 424479 424503 50 + . . scaffold485 GLEAN promoter 425971 426970 0.919783 + . ID=CGI_10024166; scaffold485 TRF Tandem_Repeat 426042 426089 96 + . . scaffold485 GLEAN mRNA 426971 453235 0.919783 + . ID=CGI_10024166; scaffold485 TRF Tandem_Repeat 457992 458081 180 + . . scaffold485 TRF Tandem_Repeat 458823 458866 88 + . . scaffold485 TRF Tandem_Repeat 462661 462698 67 + . . scaffold485 GLEAN mRNA 467901 472537 1 - . ID=CGI_10024167; scaffold485 TRF Tandem_Repeat 472428 472458 62 + . . scaffold485 GLEAN promoter 472538 473537 1 - . ID=CGI_10024167; scaffold485 TRF Tandem_Repeat 475931 475975 90 + . . scaffold485 GLEAN mRNA 478099 482930 1 - . ID=CGI_10024168; scaffold485 TRF Tandem_Repeat 480722 480777 73 + . . scaffold485 GLEAN promoter 482058 483057 1 + . ID=CGI_10024169; scaffold485 GLEAN promoter 482931 483930 1 - . ID=CGI_10024168; scaffold485 GLEAN mRNA 483058 490355 1 + . ID=CGI_10024169; scaffold485 TRF Tandem_Repeat 485039 485959 1276 + . . scaffold485 TRF Tandem_Repeat 487175 487203 58 + . . scaffold485 GLEAN promoter 492422 493421 1 + . ID=CGI_10024170; scaffold485 WUBlastX LINE_L1-Tx1 492581 492925 41 + . . scaffold485 GLEAN mRNA 493422 509566 1 + . ID=CGI_10024170; scaffold485 TRF Tandem_Repeat 496340 496384 90 + . . scaffold485 TRF Tandem_Repeat 505381 505756 689 + . . scaffold485 TRF Tandem_Repeat 512164 512567 451 + . . scaffold485 GLEAN promoter 512829 513828 0.637411 + . ID=CGI_10024171; scaffold485 TRF Tandem_Repeat 513017 513632 821 + . . scaffold485 TRF Tandem_Repeat 513017 513632 794 + . . scaffold485 GLEAN mRNA 513829 515217 0.637411 + . ID=CGI_10024171; scaffold485 GLEAN promoter 517431 518430 1 + . ID=CGI_10024172; scaffold485 TRF Tandem_Repeat 517957 518047 110 + . . scaffold485 GLEAN mRNA 518431 522086 1 + . ID=CGI_10024172; scaffold485 TRF Tandem_Repeat 519173 519220 60 + . . scaffold485 TRF Tandem_Repeat 519441 519502 124 + . . scaffold485 TRF Tandem_Repeat 523295 523336 84 + . . scaffold485 GLEAN mRNA 524555 526873 0.403018 - . ID=CGI_10024173; scaffold485 GLEAN promoter 526824 527823 0.998976 + . ID=CGI_10024174; scaffold485 GLEAN promoter 526874 527873 0.403018 - . ID=CGI_10024173; scaffold485 GLEAN mRNA 527824 536555 0.998976 + . ID=CGI_10024174; scaffold485 GLEAN promoter 538490 539489 0.999981 + . ID=CGI_10024175; scaffold485 GLEAN mRNA 539490 547368 0.999981 + . ID=CGI_10024175; scaffold485 TRF Tandem_Repeat 542895 543083 344 + . . scaffold485 TRF Tandem_Repeat 547406 547446 82 + . . scaffold485 GLEAN mRNA 550925 552205 0.999661 - . ID=CGI_10024176; scaffold485 GLEAN promoter 552206 553205 0.999661 - . ID=CGI_10024176; scaffold485 GLEAN mRNA 552329 558037 0.999644 - . ID=CGI_10024177; scaffold485 TRF Tandem_Repeat 554979 555011 66 + . . scaffold485 TRF Tandem_Repeat 555383 555602 368 + . . scaffold485 TRF Tandem_Repeat 556367 556526 67 + . . scaffold485 GLEAN promoter 558038 559037 0.999644 - . ID=CGI_10024177; scaffold485 GLEAN mRNA 558145 570471 0.98933 - . ID=CGI_10024178; scaffold485 TRF Tandem_Repeat 560447 560482 72 + . . scaffold485 GLEAN promoter 570074 571073 1 + . ID=CGI_10024179; scaffold485 GLEAN promoter 570472 571471 0.98933 - . ID=CGI_10024178; scaffold485 GLEAN mRNA 571074 578463 1 + . ID=CGI_10024179; scaffold485 GLEAN mRNA 579567 608847 0.949459 - . ID=CGI_10024180; scaffold485 TRF Tandem_Repeat 584158 584202 81 + . . scaffold485 GLEAN promoter 608848 609847 0.949459 - . ID=CGI_10024180; scaffold485 TRF Tandem_Repeat 609725 609759 70 + . . scaffold485 TRF Tandem_Repeat 612793 612838 92 + . . scaffold485 TRF Tandem_Repeat 612838 612912 150 + . . scaffold485 TRF Tandem_Repeat 613810 613864 53 + . . scaffold485 GLEAN promoter 614196 615195 1 + . ID=CGI_10024181; scaffold485 GLEAN mRNA 615196 616191 1 + . ID=CGI_10024181; scaffold485 GLEAN promoter 620134 621133 1 + . ID=CGI_10024182; scaffold485 GLEAN mRNA 621134 622447 1 + . ID=CGI_10024182; scaffold485 GLEAN mRNA 622666 623832 1 - . ID=CGI_10024183; scaffold485 GLEAN promoter 623833 624832 1 - . ID=CGI_10024183; scaffold485 TRF Tandem_Repeat 628251 628307 114 + . . scaffold485 TRF Tandem_Repeat 628444 628477 68 + . . scaffold485 GLEAN promoter 629241 630240 1 + . ID=CGI_10024184; scaffold485 GLEAN mRNA 630241 633539 1 + . ID=CGI_10024184; scaffold485 GLEAN mRNA 639186 639458 0.733495 - . ID=CGI_10024185; scaffold485 GLEAN promoter 639459 640458 0.733495 - . ID=CGI_10024185; scaffold485 GLEAN promoter 644177 645176 0.998245 + . ID=CGI_10024186; scaffold485 GLEAN mRNA 645177 658079 0.998245 + . ID=CGI_10024186; scaffold485 TRF Tandem_Repeat 652542 652894 499 + . . scaffold485 GLEAN mRNA 664247 673049 0.777485 - . ID=CGI_10024187; scaffold485 TRF Tandem_Repeat 667925 667953 58 + . . scaffold485 GLEAN promoter 673050 674049 0.777485 - . ID=CGI_10024187; scaffold485 GLEAN promoter 674397 675396 0.986567 + . ID=CGI_10024188; scaffold485 GLEAN mRNA 675397 682562 0.986567 + . ID=CGI_10024188; scaffold485 TRF Tandem_Repeat 688060 688126 89 + . . scaffold485 TRF Tandem_Repeat 688621 688684 119 + . . scaffold485 TRF Tandem_Repeat 688682 688734 74 + . . scaffold485 TRF Tandem_Repeat 688914 688964 102 + . . scaffold485 TRF Tandem_Repeat 691750 691823 85 + . . scaffold485 TRF Tandem_Repeat 699301 699611 116 + . . scaffold485 GLEAN promoter 701134 702133 0.999473 + . ID=CGI_10024189; scaffold485 GLEAN mRNA 702134 703449 0.999473 + . ID=CGI_10024189; scaffold485 TRF Tandem_Repeat 715315 715355 82 + . . scaffold485 GLEAN promoter 719369 720368 0.657908 + . ID=CGI_10024190; scaffold485 GLEAN mRNA 720369 728722 0.657908 + . ID=CGI_10024190; scaffold485 TRF Tandem_Repeat 729407 729461 62 + . . scaffold485 GLEAN mRNA 734638 750215 1 - . ID=CGI_10024191; scaffold485 GLEAN promoter 736910 737909 0.981296 + . ID=CGI_10024192; scaffold485 GLEAN mRNA 737910 749557 0.981296 + . ID=CGI_10024192; scaffold485 WUBlastX LINE_RTE-BovB 738404 738544 50 + . . scaffold485 WUBlastX LINE_RTE-BovB 738428 739498 122 + . . scaffold485 WUBlastX LINE_RTE-BovB 738980 739498 227 + . . scaffold485 TRF Tandem_Repeat 742325 743835 1651 + . . scaffold485 GLEAN promoter 748583 749582 0.55838 + . ID=CGI_10024193; scaffold485 GLEAN mRNA 749583 755498 0.55838 + . ID=CGI_10024193; scaffold485 GLEAN promoter 750216 751215 1 - . ID=CGI_10024191; scaffold485 TRF Tandem_Repeat 763710 763759 100 + . . scaffold485 TRF Tandem_Repeat 765026 765059 68 + . . scaffold485 GLEAN promoter 769392 770391 0.996819 + . ID=CGI_10024194; scaffold485 TRF Tandem_Repeat 770218 770247 60 + . . scaffold485 GLEAN mRNA 770392 773856 0.996819 + . ID=CGI_10024194; scaffold485 TRF Tandem_Repeat 771238 771286 98 + . . scaffold485 TRF Tandem_Repeat 776584 776649 132 + . . scaffold485 TRF Tandem_Repeat 800147 800194 96 + . . scaffold485 TRF Tandem_Repeat 806275 808238 3520 + . . scaffold485 TRF Tandem_Repeat 821814 821857 88 + . . scaffold485 GLEAN mRNA 822939 823256 0.999928 - . ID=CGI_10024195; scaffold485 GLEAN promoter 823257 824256 0.999928 - . ID=CGI_10024195; scaffold485 GLEAN mRNA 823477 836722 0.499894 - . ID=CGI_10024196; scaffold485 WUBlastX DNA_IS4EU 825441 825587 52 + . . scaffold485 WUBlastX DNA_IS4EU 826121 826444 118 + . . scaffold485 WUBlastX DNA_IS4EU 826770 826895 49 + . . scaffold485 WUBlastX DNA_IS4EU 826803 826976 94 + . . scaffold485 WUBlastX DNA_IS4EU 828906 829094 94 - . . scaffold485 WUBlastX DNA_IS4EU 829055 829798 347 - . . scaffold485 WUBlastX DNA_IS4EU 830084 830266 55 - . . scaffold485 WUBlastX DNA_IS4EU 830177 830446 58 - . . scaffold485 GLEAN promoter 836723 837722 0.499894 - . ID=CGI_10024196; scaffold485 GLEAN promoter 847651 848650 1 + . ID=CGI_10024197; scaffold485 TRF Tandem_Repeat 847712 847761 100 + . . scaffold485 GLEAN mRNA 848651 848836 1 + . ID=CGI_10024197; scaffold485 WUBlastX LINE_L1 856687 856953 31 - . . scaffold485 WUBlastX LINE_L1 856822 856959 41 - . . scaffold485 TRF Tandem_Repeat 864449 864510 61 + . . scaffold485 WUBlastX LINE_L1-Tx1 865263 866342 187 - . . scaffold485 WUBlastX LINE_L1-Tx1 865446 866324 282 - . . scaffold485 WUBlastX LINE_CR1-L2 866315 866614 78 + . . scaffold485 WUBlastX LINE_CR1-L2 866498 866704 48 + . . scaffold485 WUBlastX LINE_CR1-L2 866498 866614 94 + . . scaffold485 WUBlastX LINE_CR1-L2 866498 866638 75 + . . scaffold485 WUBlastX LINE_L2 867568 867852 105 + . . scaffold485 WUBlastX LINE_L2 867863 867985 60 + . . scaffold485 WUBlastX LINE_L2 868065 868247 20 + . . scaffold485 WUBlastX LINE_CR1-L2 868074 868223 30 + . . scaffold485 WUBlastX LINE_CR1-L2 868074 868166 32 + . . scaffold485 WUBlastX LINE_RTE-X 868449 868487 30 - . . scaffold485 WUBlastX LINE_RTE-X 868535 868894 58 - . . scaffold485 WUBlastX LINE_RTE-X 868595 868981 54 - . . scaffold485 WUBlastX LINE_RTE-X 869062 869517 117 - . . scaffold485 WUBlastX LINE_RTE-X 869137 869514 129 - . . scaffold485 WUBlastX LINE_RTE-X 869248 869520 136 - . . scaffold485 WUBlastX LINE_RTE-BovB 869461 869538 22 - . . scaffold485 WUBlastX LINE_RTE-X 869577 870146 312 - . . scaffold485 WUBlastX LINE_L2 869589 870251 62 - . . scaffold485 WUBlastX LINE_RTE-X 870203 870376 22 - . . scaffold485 WUBlastX LINE_CR1 870233 870418 20 - . . scaffold485 TRF Tandem_Repeat 870585 870638 108 + . . scaffold485 WUBlastX DNA_Crypton 871974 872273 76 - . . scaffold485 WUBlastX LINE_L1 872685 872900 22 - . . scaffold485 GLEAN mRNA 873020 873250 0.733453 - . ID=CGI_10024199; scaffold485 GLEAN promoter 873251 874250 0.733453 - . ID=CGI_10024199; scaffold485 WUBlastX LINE_L1 874047 874301 82 - . . scaffold485 WUBlastX LINE_L1 874086 874349 68 - . . scaffold485 WUBlastX LINE_L1 874098 874304 143 - . . scaffold485 WUBlastX LINE_Penelope 875031 876851 387 - . . scaffold485 WUBlastX DNA_hAT-Tip100 878289 878516 51 + . . scaffold485 WUBlastX LINE_L1 878961 879035 21 - . . scaffold485 WUBlastX LINE_L1-Tx1 879186 879296 39 - . . scaffold485 WUBlastX LINE_L1 879329 879583 44 - . . scaffold485 WUBlastX LINE_L1 879401 879613 52 - . . scaffold485 GLEAN promoter 882105 883104 0.558382 + . ID=CGI_10024200; scaffold485 GLEAN mRNA 883105 903474 0.558382 + . ID=CGI_10024200; scaffold487 WUBlastX LINE_L1-Tx1 1 366 62 + . . scaffold487 WUBlastX DNA_TcMar-Tc2 5855 6526 78 + . . scaffold487 WUBlastX DNA_TcMar-Tc2 5867 6388 82 + . . scaffold487 TRF Tandem_Repeat 6582 6609 56 + . . scaffold487 WUBlastX LINE_CR1 7628 7738 23 - . . scaffold487 WUBlastX LINE_RTE-BovB 7655 7771 27 - . . scaffold487 WUBlastX LINE_RTE-X 7791 8462 64 - . . scaffold487 WUBlastX LINE_CR1-L2 8535 8831 38 - . . scaffold487 WUBlastX LINE_RTE-X 8649 8867 47 - . . scaffold487 WUBlastX LINE_RTE-X 8697 8894 72 - . . scaffold487 WUBlastX LINE_Jockey 8864 9112 90 - . . scaffold487 WUBlastX LINE_I-Nimb 8864 9415 68 - . . scaffold487 WUBlastX LINE_I 8900 9178 87 - . . scaffold487 WUBlastX LINE_L1 9180 9482 38 - . . scaffold487 WUBlastX LINE_Jockey 9469 9795 39 - . . scaffold487 WUBlastX LINE_Proto2 9544 9783 51 - . . scaffold487 TRF Tandem_Repeat 26375 26423 89 + . . scaffold487 TRF Tandem_Repeat 54328 54385 116 + . . scaffold487 TRF Tandem_Repeat 54625 54666 59 + . . scaffold487 WUBlastX DNA_TcMar-Tc1 55495 55728 59 - . . scaffold487 WUBlastX DNA_TcMar-Tc1 55510 55701 82 - . . scaffold487 WUBlastX DNA_TcMar-Tc1 55739 56125 113 - . . scaffold487 TRF Tandem_Repeat 57083 57109 54 + . . scaffold487 TRF Tandem_Repeat 57277 57303 54 + . . scaffold487 TRF Tandem_Repeat 62648 63002 586 + . . scaffold487 TRF Tandem_Repeat 93990 94242 237 + . . scaffold487 GLEAN mRNA 95130 96021 0.999991 - . ID=CGI_10017040; scaffold487 GLEAN promoter 96022 97021 0.999991 - . ID=CGI_10017040; scaffold487 WUBlastX LINE_RTE-X 105937 106044 47 + . . scaffold487 GLEAN promoter 106802 107801 0.995434 + . ID=CGI_10017041; scaffold487 GLEAN mRNA 107802 145352 0.995434 + . ID=CGI_10017041; scaffold487 TRF Tandem_Repeat 132739 132793 110 + . . scaffold487 TRF Tandem_Repeat 137322 137880 822 + . . scaffold487 TRF Tandem_Repeat 138134 138560 629 + . . scaffold487 GLEAN promoter 159173 160172 0.999948 + . ID=CGI_10017042; scaffold487 GLEAN mRNA 160173 171244 0.999948 + . ID=CGI_10017042; scaffold487 GLEAN promoter 175191 176190 1 + . ID=CGI_10017043; scaffold487 GLEAN mRNA 176191 186770 1 + . ID=CGI_10017043; scaffold487 TRF Tandem_Repeat 180151 180189 51 + . . scaffold487 GLEAN mRNA 186340 186558 0.59015 - . ID=CGI_10017044; scaffold487 GLEAN promoter 186559 187558 0.59015 - . ID=CGI_10017044; scaffold487 TRF Tandem_Repeat 202814 202880 125 + . . scaffold487 TRF Tandem_Repeat 206046 206074 58 + . . scaffold487 GLEAN mRNA 213431 228228 0.999999 - . ID=CGI_10017045; scaffold487 TRF Tandem_Repeat 225268 225293 52 + . . scaffold487 GLEAN promoter 228229 229228 0.999999 - . ID=CGI_10017045; scaffold487 TRF Tandem_Repeat 229615 229665 59 + . . scaffold487 GLEAN promoter 230744 231743 0.72073 + . ID=CGI_10017046; scaffold487 GLEAN mRNA 231744 231944 0.72073 + . ID=CGI_10017046; scaffold487 TRF Tandem_Repeat 232502 232557 78 + . . scaffold487 GLEAN mRNA 236183 239257 0.482546 - . ID=CGI_10017047; scaffold487 GLEAN promoter 239258 240257 0.482546 - . ID=CGI_10017047; scaffold487 GLEAN promoter 259434 260433 0.618135 + . ID=CGI_10017049; scaffold487 GLEAN mRNA 260434 260682 0.618135 + . ID=CGI_10017049; scaffold487 TRF Tandem_Repeat 266077 266112 72 + . . scaffold487 GLEAN promoter 281371 282370 0.712681 + . ID=CGI_10017050; scaffold487 GLEAN mRNA 282371 286215 0.712681 + . ID=CGI_10017050; scaffold487 TRF Tandem_Repeat 284584 284877 442 + . . scaffold487 TRF Tandem_Repeat 311174 311220 94 + . . scaffold487 TRF Tandem_Repeat 311961 312009 98 + . . scaffold487 TRF Tandem_Repeat 314985 315041 114 + . . scaffold487 TRF Tandem_Repeat 318833 318864 64 + . . scaffold487 TRF Tandem_Repeat 360219 360257 78 + . . scaffold487 TRF Tandem_Repeat 360685 360722 60 + . . scaffold487 TRF Tandem_Repeat 361648 361692 90 + . . scaffold487 TRF Tandem_Repeat 362401 362428 56 + . . scaffold487 TRF Tandem_Repeat 363651 363842 72 + . . scaffold487 GLEAN promoter 367026 368025 0.738574 + . ID=CGI_10017051; scaffold487 GLEAN mRNA 368026 372630 0.738574 + . ID=CGI_10017051; scaffold487 TRF Tandem_Repeat 371238 371273 56 + . . scaffold487 GLEAN mRNA 373864 375197 1 - . ID=CGI_10017052; scaffold487 GLEAN promoter 375198 376197 1 - . ID=CGI_10017052; scaffold487 TRF Tandem_Repeat 378695 378797 122 + . . scaffold487 WUBlastX LTR_Gypsy 384536 384757 97 + . . scaffold487 WUBlastX LTR_Gypsy 384636 385145 76 + . . scaffold487 WUBlastX LTR_Gypsy 384723 384974 80 + . . scaffold487 TRF Tandem_Repeat 396800 397046 286 + . . scaffold487 TRF Tandem_Repeat 399889 399951 126 + . . scaffold487 TRF Tandem_Repeat 405078 405343 343 + . . scaffold487 TRF Tandem_Repeat 407663 408139 471 + . . scaffold487 TRF Tandem_Repeat 407679 408127 323 + . . scaffold487 TRF Tandem_Repeat 413196 413221 52 + . . scaffold487 WUBlastX DNA_Kolobok 426924 427166 88 + . . scaffold487 GLEAN promoter 427341 428340 1 + . ID=CGI_10017053; scaffold487 GLEAN mRNA 428341 441144 1 + . ID=CGI_10017053; scaffold487 WUBlastX LTR_Gypsy 432993 436949 3602 - . . scaffold487 TRF Tandem_Repeat 439701 439757 78 + . . scaffold487 TRF Tandem_Repeat 439710 439757 69 + . . scaffold487 WUBlastX DNA_P 439977 440111 21 - . . scaffold487 GLEAN mRNA 439996 447135 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 440360 440506 71 - . . scaffold487 WUBlastX DNA_Kolobok 441902 442141 95 + . . scaffold487 WUBlastX DNA_Kolobok 441998 442141 95 + . . scaffold487 WUBlastX DNA_P 447013 447177 26 - . . scaffold487 GLEAN promoter 447136 448135 0.39713 - . ID=CGI_10017054; scaffold487 WUBlastX DNA_P 447291 447482 39 - . . scaffold487 WUBlastX DNA_P 448651 448782 30 - . . scaffold487 WUBlastX DNA_P 448651 448749 31 - . . scaffold487 TRF Tandem_Repeat 450265 451074 764 + . . scaffold487 TRF Tandem_Repeat 452521 452582 99 + . . scaffold487 TRF Tandem_Repeat 452524 452581 73 + . . scaffold487 TRF Tandem_Repeat 463047 463103 80 + . . scaffold487 TRF Tandem_Repeat 463047 463100 65 + . . scaffold487 TRF Tandem_Repeat 464837 465920 1320 + . . scaffold487 TRF Tandem_Repeat 467474 468557 1311 + . . scaffold487 WUBlastX DNA_IS4EU 475033 475605 65 + . . scaffold487 GLEAN promoter 475048 476047 0.998747 + . ID=CGI_10017055; scaffold487 GLEAN mRNA 476048 476860 0.998747 + . ID=CGI_10017055; scaffold487 GLEAN promoter 477464 478463 0.999375 + . ID=CGI_10017056; scaffold487 GLEAN mRNA 478464 485762 0.999375 + . ID=CGI_10017056; scaffold487 WUBlastX LINE_RTE-X 484013 484210 41 - . . scaffold487 GLEAN mRNA 488223 489975 0.937846 - . ID=CGI_10017057; scaffold487 GLEAN promoter 489976 490481 0.937846 - . ID=CGI_10017057; scaffold488 TRF Tandem_Repeat 8892 8937 56 + . . scaffold488 WUBlastX LINE_L2 10458 10802 65 + . . scaffold488 GLEAN mRNA 23091 53480 0.998314 - . ID=CGI_10005407; scaffold488 WUBlastX LINE_L2 45161 45541 89 - . . scaffold488 WUBlastX LINE_L2 45236 45625 118 - . . scaffold488 WUBlastX LINE_L2 45248 45541 160 - . . scaffold488 GLEAN promoter 53481 54480 0.998314 - . ID=CGI_10005407; scaffold488 WUBlastX LTR_Gypsy 62566 62958 55 - . . scaffold488 WUBlastX LTR_Gypsy 62641 63165 68 - . . scaffold488 WUBlastX LTR_Gypsy 62656 62979 146 - . . scaffold488 WUBlastX LTR_Gypsy 62656 63069 73 - . . scaffold488 WUBlastX LTR_Gypsy-Cigr 62964 63305 27 - . . scaffold488 WUBlastX LTR_Gypsy 63392 63595 29 - . . scaffold488 WUBlastX LTR_Gypsy 63428 63595 95 - . . scaffold488 WUBlastX LTR_Gypsy 63610 63891 129 - . . scaffold488 WUBlastX LTR_Gypsy 63684 64376 203 - . . scaffold488 WUBlastX LTR_Gypsy 63795 64379 240 - . . scaffold488 WUBlastX LTR_Gypsy-Cigr 64382 64744 139 - . . scaffold488 WUBlastX LTR_Gypsy 64382 64621 153 - . . scaffold488 WUBlastX LTR_Gypsy 64382 64912 84 - . . scaffold488 WUBlastX LTR_Gypsy 64382 64672 152 - . . scaffold488 WUBlastX LTR_Gypsy 64603 64785 93 - . . scaffold488 WUBlastX LTR_Gypsy 64642 65070 44 - . . scaffold488 GLEAN mRNA 66562 66894 0.989551 - . ID=CGI_10005408; scaffold488 GLEAN promoter 66895 67894 0.989551 - . ID=CGI_10005408; scaffold488 WUBlastX LINE_RTE-X 69439 69618 91 + . . scaffold488 WUBlastX LINE_RTE-X 69620 69796 34 + . . scaffold488 WUBlastX LINE_RTE-X 69780 70460 133 + . . scaffold488 WUBlastX LINE_RTE-X 70203 70538 46 + . . scaffold488 WUBlastX DNA_Academ 71183 71437 44 - . . scaffold488 TRF Tandem_Repeat 77857 77881 50 + . . scaffold488 TRF Tandem_Repeat 78029 78083 110 + . . scaffold488 WUBlastX LINE_L1-Tx1 81169 81489 33 + . . scaffold488 WUBlastX LTR_Pao 85346 85801 47 - . . scaffold488 WUBlastX LTR_Pao 85747 86070 55 - . . scaffold488 WUBlastX LTR_Pao 85801 86595 114 - . . scaffold488 WUBlastX LTR_Pao 85801 86316 138 - . . scaffold488 WUBlastX LTR_Pao 87013 87126 23 - . . scaffold488 GLEAN mRNA 87554 88225 1 - . ID=CGI_10005409; scaffold488 WUBlastX LTR_Copia 87887 88090 34 - . . scaffold488 GLEAN promoter 88226 89225 1 - . ID=CGI_10005409; scaffold488 WUBlastX LTR_Copia 88299 88358 38 - . . scaffold488 WUBlastX LTR_Gypsy 88332 89816 480 - . . scaffold488 WUBlastX LTR_Gypsy 88560 91859 1905 - . . scaffold488 WUBlastX LTR_Gypsy 90375 92531 578 - . . scaffold488 WUBlastX LTR_Gypsy-Cigr 92457 93002 179 - . . scaffold488 GLEAN promoter 92993 93992 0.99942 + . ID=CGI_10005410; scaffold488 GLEAN mRNA 93993 103027 0.99942 + . ID=CGI_10005410; scaffold488 TRF Tandem_Repeat 94722 94779 116 + . . scaffold488 GLEAN mRNA 104290 107016 1 - . ID=CGI_10005411; scaffold488 GLEAN promoter 106488 107487 1 + . ID=CGI_10005412; scaffold488 GLEAN promoter 107017 108016 1 - . ID=CGI_10005411; scaffold488 GLEAN mRNA 107488 113242 1 + . ID=CGI_10005412; scaffold488 TRF Tandem_Repeat 107953 108014 53 + . . scaffold488 TRF Tandem_Repeat 107956 108007 54 + . . scaffold489 TRF Tandem_Repeat 5433 5496 103 + . . scaffold489 TRF Tandem_Repeat 6749 6777 58 + . . scaffold489 TRF Tandem_Repeat 17277 17318 52 + . . scaffold489 GLEAN promoter 18069 19068 0.843727 + . ID=CGI_10020225; scaffold489 GLEAN mRNA 19069 26060 0.843727 + . ID=CGI_10020225; scaffold489 TRF Tandem_Repeat 28519 28553 70 + . . scaffold489 GLEAN promoter 33806 34805 0.539397 + . ID=CGI_10020226; scaffold489 GLEAN mRNA 34806 42333 0.539397 + . ID=CGI_10020226; scaffold489 TRF Tandem_Repeat 38319 38354 72 + . . scaffold489 WUBlastX LTR_Gypsy 46145 46528 54 + . . scaffold489 WUBlastX LTR_Gypsy-Cigr 46358 46528 104 + . . scaffold489 WUBlastX LTR_Gypsy 46388 46594 118 + . . scaffold489 WUBlastX LTR_Gypsy 46397 46903 60 + . . scaffold489 WUBlastX LTR_Gypsy 46918 47037 44 + . . scaffold489 WUBlastX LTR_Gypsy 47022 47357 38 + . . scaffold489 WUBlastX LTR_Gypsy 47133 47654 56 + . . scaffold489 WUBlastX LTR_Gypsy 47136 47276 66 + . . scaffold489 GLEAN promoter 83703 84702 0.776794 + . ID=CGI_10020227; scaffold489 GLEAN mRNA 84703 85146 0.776794 + . ID=CGI_10020227; scaffold489 GLEAN mRNA 93550 113740 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 96414 96500 86 + . . scaffold489 TRF Tandem_Repeat 96960 97032 146 + . . scaffold489 TRF Tandem_Repeat 97981 98029 98 + . . scaffold489 TRF Tandem_Repeat 98235 98279 90 + . . scaffold489 TRF Tandem_Repeat 99402 99572 105 + . . scaffold489 TRF Tandem_Repeat 99441 99531 82 + . . scaffold489 TRF Tandem_Repeat 99517 99577 50 + . . scaffold489 WUBlastX DNA_Crypton 107576 108610 594 - . . scaffold489 WUBlastX DNA_Harbinger 112001 112126 124 - . . scaffold489 WUBlastX DNA_Harbinger 112688 113044 129 - . . scaffold489 WUBlastX DNA_Harbinger 112724 113137 105 - . . scaffold489 WUBlastX DNA_Harbinger 112760 113209 22 - . . scaffold489 GLEAN promoter 113741 114740 0.603671 - . ID=CGI_10020228; scaffold489 TRF Tandem_Repeat 125912 126003 130 + . . scaffold489 TRF Tandem_Repeat 127979 128202 112 + . . scaffold489 TRF Tandem_Repeat 128141 128238 71 + . . scaffold489 TRF Tandem_Repeat 128758 128851 125 + . . scaffold489 TRF Tandem_Repeat 128898 128986 128 + . . scaffold489 GLEAN promoter 130032 131031 0.997525 + . ID=CGI_10020229; scaffold489 GLEAN mRNA 131032 133888 0.997525 + . ID=CGI_10020229; scaffold489 TRF Tandem_Repeat 132065 132106 84 + . . scaffold489 TRF Tandem_Repeat 134673 134706 68 + . . scaffold489 GLEAN promoter 135190 136189 0.989192 + . ID=CGI_10020230; scaffold489 GLEAN mRNA 136190 156521 0.989192 + . ID=CGI_10020230; scaffold489 TRF Tandem_Repeat 144588 144635 64 + . . scaffold489 TRF Tandem_Repeat 144808 145499 965 + . . scaffold489 TRF Tandem_Repeat 149051 149090 80 + . . scaffold489 TRF Tandem_Repeat 166000 166905 1070 + . . scaffold489 TRF Tandem_Repeat 167687 167724 51 + . . scaffold489 GLEAN mRNA 169069 185523 0.332313 - . ID=CGI_10020231; scaffold489 TRF Tandem_Repeat 172842 173819 966 + . . scaffold489 GLEAN promoter 185524 186523 0.332313 - . ID=CGI_10020231; scaffold489 GLEAN promoter 190893 191892 0.988309 + . ID=CGI_10020232; scaffold489 GLEAN mRNA 191893 206071 0.988309 + . ID=CGI_10020232; scaffold489 TRF Tandem_Repeat 211684 211810 247 + . . scaffold489 TRF Tandem_Repeat 212149 212185 74 + . . scaffold489 TRF Tandem_Repeat 212951 212989 78 + . . scaffold489 GLEAN mRNA 213004 228120 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 214035 214073 78 + . . scaffold489 TRF Tandem_Repeat 215648 216117 206 + . . scaffold489 TRF Tandem_Repeat 215657 216126 481 + . . scaffold489 TRF Tandem_Repeat 215660 216126 469 + . . scaffold489 TRF Tandem_Repeat 215750 215799 55 + . . scaffold489 TRF Tandem_Repeat 215968 216042 60 + . . scaffold489 TRF Tandem_Repeat 216008 216075 52 + . . scaffold489 GLEAN promoter 220138 221137 0.775457 + . ID=CGI_10020234; scaffold489 GLEAN mRNA 221138 221377 0.775457 + . ID=CGI_10020234; scaffold489 TRF Tandem_Repeat 222867 222916 100 + . . scaffold489 TRF Tandem_Repeat 222916 222959 88 + . . scaffold489 GLEAN promoter 228121 229120 0.999676 - . ID=CGI_10020233; scaffold489 TRF Tandem_Repeat 230173 230244 63 + . . scaffold489 TRF Tandem_Repeat 230173 230244 67 + . . scaffold489 TRF Tandem_Repeat 230173 230261 153 + . . scaffold489 TRF Tandem_Repeat 230176 230259 62 + . . scaffold489 GLEAN promoter 233647 234646 0.531615 + . ID=CGI_10020235; scaffold489 GLEAN mRNA 234647 235732 0.531615 + . ID=CGI_10020235; scaffold489 TRF Tandem_Repeat 238913 238983 142 + . . scaffold489 TRF Tandem_Repeat 246157 246189 66 + . . scaffold489 GLEAN promoter 258247 259246 0.722581 + . ID=CGI_10020236; scaffold489 GLEAN mRNA 259247 271094 0.722581 + . ID=CGI_10020236; scaffold489 GLEAN mRNA 278462 279469 0.999661 - . ID=CGI_10020237; scaffold489 GLEAN promoter 279470 280469 0.999661 - . ID=CGI_10020237; scaffold489 GLEAN promoter 280145 281144 0.999676 + . ID=CGI_10020238; scaffold489 TRF Tandem_Repeat 280376 280468 168 + . . scaffold489 GLEAN mRNA 281145 314598 0.999676 + . ID=CGI_10020238; scaffold489 GLEAN mRNA 317110 317794 1 - . ID=CGI_10020239; scaffold489 GLEAN promoter 317795 318794 1 - . ID=CGI_10020239; scaffold489 GLEAN promoter 318851 319850 0.999998 + . ID=CGI_10020240; scaffold489 GLEAN mRNA 319851 329259 0.999998 + . ID=CGI_10020240; scaffold489 GLEAN mRNA 335517 349011 1 - . ID=CGI_10020241; scaffold489 GLEAN promoter 340222 341221 1 + . ID=CGI_10020242; scaffold489 GLEAN mRNA 341222 347239 1 + . ID=CGI_10020242; scaffold489 GLEAN promoter 349012 350011 1 - . ID=CGI_10020241; scaffold489 TRF Tandem_Repeat 349265 349289 50 + . . scaffold489 GLEAN promoter 354901 355900 0.999372 + . ID=CGI_10020243; scaffold489 GLEAN mRNA 355901 356134 0.999372 + . ID=CGI_10020243; scaffold489 TRF Tandem_Repeat 356780 356821 84 + . . scaffold489 GLEAN promoter 358621 359620 0.969929 + . ID=CGI_10020244; scaffold489 GLEAN mRNA 359621 366182 0.969929 + . ID=CGI_10020244; scaffold489 TRF Tandem_Repeat 364003 364233 141 + . . scaffold489 TRF Tandem_Repeat 364321 364351 62 + . . scaffold489 GLEAN promoter 365356 366355 0.977323 + . ID=CGI_10020245; scaffold489 GLEAN mRNA 366356 372390 0.977323 + . ID=CGI_10020245; scaffold489 GLEAN promoter 373724 374723 1 + . ID=CGI_10020246; scaffold489 GLEAN mRNA 374724 375622 1 + . ID=CGI_10020246; scaffold489 GLEAN mRNA 380417 385797 0.999732 - . ID=CGI_10020247; scaffold489 TRF Tandem_Repeat 380689 380881 109 + . . scaffold489 TRF Tandem_Repeat 384199 384246 96 + . . scaffold489 GLEAN promoter 385798 386797 0.999732 - . ID=CGI_10020247; scaffold489 WUBlastX LINE_RTE-X 386874 386996 70 - . . scaffold489 GLEAN promoter 386971 387970 0.997832 + . ID=CGI_10020248; scaffold489 GLEAN mRNA 387971 405923 0.997832 + . ID=CGI_10020248; scaffold489 GLEAN mRNA 391061 392906 0.999998 - . ID=CGI_10020249; scaffold489 GLEAN promoter 392907 393906 0.999998 - . ID=CGI_10020249; scaffold489 TRF Tandem_Repeat 397968 398019 68 + . . scaffold489 TRF Tandem_Repeat 403014 403106 80 + . . scaffold489 TRF Tandem_Repeat 403025 403780 746 + . . scaffold489 TRF Tandem_Repeat 428598 428640 79 + . . scaffold489 TRF Tandem_Repeat 440803 440883 110 + . . scaffold489 GLEAN mRNA 461042 464101 0.910796 - . ID=CGI_10020250; scaffold489 GLEAN promoter 464102 465101 0.910796 - . ID=CGI_10020250; scaffold489 GLEAN promoter 465545 466544 0.735232 + . ID=CGI_10020251; scaffold489 GLEAN mRNA 466545 479036 0.735232 + . ID=CGI_10020251; scaffold489 TRF Tandem_Repeat 471471 472279 1232 + . . scaffold489 TRF Tandem_Repeat 472302 473188 1133 + . . scaffold489 TRF Tandem_Repeat 474349 474420 58 + . . scaffold489 WUBlastX LINE_L2 481221 481454 20 - . . scaffold489 WUBlastX LINE_CR1-L2 483569 483616 32 - . . scaffold489 WUBlastX LINE_L2 483761 484564 175 - . . scaffold489 WUBlastX LINE_CR1-L2 484588 484797 99 - . . scaffold489 WUBlastX LINE_CR1-L2 484609 484782 102 - . . scaffold489 WUBlastX LINE_L2 484776 484910 80 - . . scaffold489 WUBlastX LINE_Jockey 485222 485278 20 - . . scaffold489 WUBlastX DNA_TcMar-Marin 485614 485769 32 + . . scaffold489 WUBlastX LINE_CR1 485710 485811 21 - . . scaffold489 WUBlastX DNA_MuDR 514554 515849 50 - . . scaffold489 WUBlastX DNA_MuDR 514956 515306 77 - . . scaffold489 WUBlastX DNA_MuDR 514998 515438 61 - . . scaffold489 WUBlastX LINE_L2 517440 517655 29 - . . scaffold489 WUBlastX LTR_Gypsy 530627 531214 71 - . . scaffold489 WUBlastX LTR_Gypsy 530759 531358 59 - . . scaffold489 WUBlastX LTR_ERVK 531403 531495 44 - . . scaffold489 WUBlastX LTR_Gypsy 531820 532395 149 - . . scaffold489 WUBlastX LTR_Gypsy 531895 532503 42 - . . scaffold489 WUBlastX DNA_Crypton 535096 535290 81 + . . scaffold489 WUBlastX DNA_Crypton 535419 535820 118 + . . scaffold489 WUBlastX DNA_Crypton 535482 535856 159 + . . scaffold489 GLEAN mRNA 535940 574437 0.58701 - . ID=CGI_10020253; scaffold489 TRF Tandem_Repeat 554133 554171 69 + . . scaffold489 TRF Tandem_Repeat 559324 559356 66 + . . scaffold489 TRF Tandem_Repeat 567677 568027 152 + . . scaffold489 TRF Tandem_Repeat 567680 568123 197 + . . scaffold489 GLEAN promoter 574438 575437 0.58701 - . ID=CGI_10020253; scaffold489 TRF Tandem_Repeat 574943 575039 90 + . . scaffold489 TRF Tandem_Repeat 576254 576310 114 + . . scaffold489 TRF Tandem_Repeat 580505 580597 105 + . . scaffold489 TRF Tandem_Repeat 580740 580843 145 + . . scaffold489 TRF Tandem_Repeat 585610 585643 68 + . . scaffold489 GLEAN mRNA 587095 588226 0.719383 - . ID=CGI_10020254; scaffold489 GLEAN promoter 588227 589226 0.719383 - . ID=CGI_10020254; scaffold489 WUBlastX LTR_Gypsy 588290 589531 1109 - . . scaffold489 WUBlastX LTR_Gypsy 589531 590826 1206 - . . scaffold489 WUBlastX LTR_Gypsy 590865 591755 82 - . . scaffold489 WUBlastX LTR_Gypsy 591060 591764 363 - . . scaffold489 TRF Tandem_Repeat 597109 598726 2018 + . . scaffold489 TRF Tandem_Repeat 603863 603916 83 + . . scaffold489 TRF Tandem_Repeat 605138 606386 1810 + . . scaffold489 TRF Tandem_Repeat 608607 608940 501 + . . scaffold489 TRF Tandem_Repeat 623424 623458 70 + . . scaffold489 WUBlastX LTR_Gypsy 625332 626216 114 - . . scaffold489 WUBlastX LTR_Gypsy 625479 626219 503 - . . scaffold489 WUBlastX LTR_Gypsy 626222 626689 457 - . . scaffold489 WUBlastX LINE_RTE-X 626770 627525 89 + . . scaffold489 WUBlastX LINE_RTE-X 627555 627653 34 + . . scaffold489 WUBlastX LINE_RTE-X 627611 627706 28 + . . scaffold49 TRF Tandem_Repeat 20224 20269 83 + . . scaffold49 TRF Tandem_Repeat 20336 20526 157 + . . scaffold49 TRF Tandem_Repeat 30909 30967 118 + . . scaffold49 TRF Tandem_Repeat 45575 45816 297 + . . scaffold49 TRF Tandem_Repeat 45579 45816 262 + . . scaffold49 TRF Tandem_Repeat 46845 46904 120 + . . scaffold49 TRF Tandem_Repeat 46904 46952 75 + . . scaffold49 TRF Tandem_Repeat 66360 66413 99 + . . scaffold49 TRF Tandem_Repeat 67862 67903 84 + . . scaffold49 TRF Tandem_Repeat 68286 68335 84 + . . scaffold49 WUBlastX LINE_Penelope 75371 75724 26 + . . scaffold49 TRF Tandem_Repeat 84655 84694 73 + . . scaffold49 GLEAN promoter 84891 85890 0.333225 + . ID=CGI_10013273; scaffold49 GLEAN mRNA 85891 94441 0.333225 + . ID=CGI_10013273; scaffold49 TRF Tandem_Repeat 90425 90487 126 + . . scaffold49 GLEAN promoter 95432 96431 1 + . ID=CGI_10013274; scaffold49 GLEAN mRNA 96432 99725 1 + . ID=CGI_10013274; scaffold49 GLEAN promoter 100684 101683 0.999676 + . ID=CGI_10013275; scaffold49 GLEAN mRNA 101684 107000 0.999676 + . ID=CGI_10013275; scaffold49 TRF Tandem_Repeat 109492 109536 90 + . . scaffold49 TRF Tandem_Repeat 116194 116226 66 + . . scaffold49 GLEAN mRNA 121699 121983 0.733495 - . ID=CGI_10013276; scaffold49 GLEAN promoter 121984 122983 0.733495 - . ID=CGI_10013276; scaffold49 GLEAN promoter 123845 124844 1 + . ID=CGI_10013277; scaffold49 GLEAN mRNA 124845 125526 1 + . ID=CGI_10013277; scaffold49 GLEAN promoter 128676 129675 1 + . ID=CGI_10013278; scaffold49 GLEAN mRNA 129676 130387 1 + . ID=CGI_10013278; scaffold49 GLEAN promoter 131806 132805 1 + . ID=CGI_10013279; scaffold49 GLEAN mRNA 132806 133592 1 + . ID=CGI_10013279; scaffold49 GLEAN promoter 137048 138047 1 + . ID=CGI_10013280; scaffold49 GLEAN mRNA 138048 138469 1 + . ID=CGI_10013280; scaffold49 GLEAN promoter 141271 142270 1 + . ID=CGI_10013281; scaffold49 GLEAN mRNA 142271 145889 1 + . ID=CGI_10013281; scaffold49 TRF Tandem_Repeat 142903 142951 98 + . . scaffold49 TRF Tandem_Repeat 144636 144695 102 + . . scaffold49 TRF Tandem_Repeat 146650 146703 99 + . . scaffold49 GLEAN mRNA 150897 151184 1 - . ID=CGI_10013282; scaffold49 GLEAN promoter 151185 152184 1 - . ID=CGI_10013282; scaffold49 TRF Tandem_Repeat 153324 153366 77 + . . scaffold49 TRF Tandem_Repeat 153364 153401 58 + . . scaffold49 TRF Tandem_Repeat 158244 158304 122 + . . scaffold49 TRF Tandem_Repeat 159897 159927 62 + . . scaffold49 TRF Tandem_Repeat 160288 160479 366 + . . scaffold49 TRF Tandem_Repeat 160448 160591 270 + . . scaffold49 TRF Tandem_Repeat 161138 162056 1073 + . . scaffold49 TRF Tandem_Repeat 163450 163515 89 + . . scaffold49 TRF Tandem_Repeat 163453 163514 72 + . . scaffold49 TRF Tandem_Repeat 170486 170525 71 + . . scaffold49 TRF Tandem_Repeat 179387 179445 118 + . . scaffold49 TRF Tandem_Repeat 180739 180783 90 + . . scaffold49 GLEAN promoter 181743 182742 1 + . ID=CGI_10013283; scaffold49 TRF Tandem_Repeat 182147 182188 84 + . . scaffold49 GLEAN mRNA 182743 183327 1 + . ID=CGI_10013283; scaffold49 WUBlastX LINE_L2 192564 192896 99 - . . scaffold49 WUBlastX LINE_CR1-L2 192919 193917 304 - . . scaffold49 WUBlastX LINE_CR1 193717 193998 110 - . . scaffold49 WUBlastX LINE_CR1 193717 194286 36 - . . scaffold49 TRF Tandem_Repeat 199383 199463 112 + . . scaffold49 TRF Tandem_Repeat 212541 212607 62 + . . scaffold49 GLEAN promoter 215890 216889 0.995804 + . ID=CGI_10013284; scaffold49 GLEAN mRNA 216890 217606 0.995804 + . ID=CGI_10013284; scaffold49 TRF Tandem_Repeat 240545 241602 1220 + . . scaffold49 GLEAN mRNA 244358 267681 0.992812 - . ID=CGI_10013285; scaffold49 WUBlastX LINE_L1-Tx1 246655 246912 21 - . . scaffold49 WUBlastX DNA_IS 254181 255044 1443 + . . scaffold49 TRF Tandem_Repeat 259734 259759 52 + . . scaffold49 TRF Tandem_Repeat 262478 262512 52 + . . scaffold49 GLEAN promoter 267682 268681 0.992812 - . ID=CGI_10013285; scaffold49 GLEAN mRNA 270599 295772 0.644326 - . ID=CGI_10013286; scaffold49 TRF Tandem_Repeat 272805 272872 57 + . . scaffold49 GLEAN promoter 276826 277825 1 + . ID=CGI_10013287; scaffold49 GLEAN mRNA 277826 278041 1 + . ID=CGI_10013287; scaffold49 GLEAN promoter 286834 287833 0.999661 + . ID=CGI_10013288; scaffold49 TRF Tandem_Repeat 286931 286978 87 + . . scaffold49 GLEAN mRNA 287834 289645 0.999661 + . ID=CGI_10013288; scaffold49 TRF Tandem_Repeat 289295 289344 100 + . . scaffold49 WUBlastX LINE_RTE-BovB 294018 294161 50 + . . scaffold49 GLEAN promoter 295773 296772 0.644326 - . ID=CGI_10013286; scaffold49 TRF Tandem_Repeat 295978 296052 150 + . . scaffold49 TRF Tandem_Repeat 313584 313648 107 + . . scaffold49 TRF Tandem_Repeat 314205 314425 333 + . . scaffold49 WUBlastX LINE_RTE-X 315199 315594 150 + . . scaffold49 WUBlastX LINE_RTE-X 315628 315747 22 + . . scaffold49 WUBlastX LINE_RTE-X 315787 315909 109 + . . scaffold49 TRF Tandem_Repeat 317919 318128 174 + . . scaffold49 TRF Tandem_Repeat 317919 318128 210 + . . scaffold49 TRF Tandem_Repeat 318127 318312 162 + . . scaffold49 TRF Tandem_Repeat 318198 318314 119 + . . scaffold49 TRF Tandem_Repeat 324616 324681 132 + . . scaffold49 TRF Tandem_Repeat 324693 324776 150 + . . scaffold49 GLEAN promoter 327739 328738 0.714612 + . ID=CGI_10013289; scaffold49 GLEAN mRNA 328739 333495 0.714612 + . ID=CGI_10013289; scaffold49 GLEAN promoter 335696 336695 0.967821 + . ID=CGI_10013290; scaffold49 GLEAN mRNA 336696 351025 0.967821 + . ID=CGI_10013290; scaffold49 TRF Tandem_Repeat 345510 346197 794 + . . scaffold49 TRF Tandem_Repeat 346713 346779 89 + . . scaffold49 TRF Tandem_Repeat 347279 347324 92 + . . scaffold49 TRF Tandem_Repeat 347348 347380 66 + . . scaffold49 TRF Tandem_Repeat 347568 347629 124 + . . scaffold49 TRF Tandem_Repeat 349930 350003 94 + . . scaffold49 TRF Tandem_Repeat 349930 350003 85 + . . scaffold49 TRF Tandem_Repeat 350115 350228 201 + . . scaffold490 TRF Tandem_Repeat 1 37 74 + . . scaffold490 TRF Tandem_Repeat 5402 5470 129 + . . scaffold490 TRF Tandem_Repeat 16105 16191 77 + . . scaffold490 TRF Tandem_Repeat 16257 16429 120 + . . scaffold490 TRF Tandem_Repeat 16454 16564 141 + . . scaffold490 GLEAN promoter 24929 25928 0.74241 + . ID=CGI_10009160; scaffold490 GLEAN mRNA 25929 33899 0.74241 + . ID=CGI_10009160; scaffold490 TRF Tandem_Repeat 26236 26283 96 + . . scaffold490 GLEAN promoter 51022 52021 1 + . ID=CGI_10009161; scaffold490 GLEAN mRNA 52022 56266 1 + . ID=CGI_10009161; scaffold490 TRF Tandem_Repeat 54245 54295 102 + . . scaffold490 TRF Tandem_Repeat 63654 63703 84 + . . scaffold490 TRF Tandem_Repeat 63657 63702 58 + . . scaffold490 TRF Tandem_Repeat 66147 66184 76 + . . scaffold490 WUBlastX LINE_RTE-X 69678 69971 43 - . . scaffold490 WUBlastX LINE_RTE-X 69765 69971 46 - . . scaffold490 WUBlastX LINE_RTE-X 70115 70282 41 - . . scaffold490 WUBlastX LINE_RTE-X 70163 70486 66 - . . scaffold490 WUBlastX LINE_RTE-X 70333 70683 63 - . . scaffold490 WUBlastX LINE_RTE-X 70507 70731 33 - . . scaffold490 WUBlastX LTR_DIRS 90061 90219 50 - . . scaffold490 WUBlastX LTR_DIRS 90242 90454 135 - . . scaffold490 WUBlastX LTR_DIRS 90456 90932 276 - . . scaffold490 WUBlastX LTR_DIRS 90904 91002 20 - . . scaffold490 GLEAN promoter 109595 110594 0.717521 + . ID=CGI_10009162; scaffold490 GLEAN mRNA 110595 119533 0.717521 + . ID=CGI_10009162; scaffold490 WUBlastX LTR_Pao 115371 115556 33 - . . scaffold490 WUBlastX DNA_TcMar-Fot1 115708 116517 207 - . . scaffold490 WUBlastX DNA_TcMar-Fot1 115957 116517 255 - . . scaffold490 WUBlastX DNA_TcMar-Fot1 116502 117134 139 - . . scaffold490 WUBlastX DNA_TcMar-Fot1 116523 116996 166 - . . scaffold490 WUBlastX DNA_TcMar-Fot1 117032 117196 61 - . . scaffold490 TRF Tandem_Repeat 120644 120711 82 + . . scaffold490 TRF Tandem_Repeat 120644 120711 73 + . . scaffold490 TRF Tandem_Repeat 120644 120711 55 + . . scaffold490 TRF Tandem_Repeat 120645 120683 60 + . . scaffold490 WUBlastX LTR_Gypsy 128891 129502 363 + . . scaffold490 WUBlastX LTR_Gypsy 128918 129730 327 + . . scaffold490 WUBlastX LTR_Gypsy 129781 129837 36 + . . scaffold490 WUBlastX LTR_Gypsy 129924 130358 23 + . . scaffold490 WUBlastX LTR_Gypsy 130062 131468 946 + . . scaffold490 WUBlastX LTR_Gypsy 131446 133380 1708 + . . scaffold490 WUBlastX LTR_Gypsy 133385 133813 214 + . . scaffold490 WUBlastX LTR_Gypsy 133394 133951 28 + . . scaffold490 WUBlastX RC_Helitron 139941 140357 89 + . . scaffold490 WUBlastX RC_Helitron 142708 142926 60 + . . scaffold490 WUBlastX RC_Helitron 148841 152161 2148 - . . scaffold490 WUBlastX RC_Helitron 149357 154402 3392 - . . scaffold490 WUBlastX RC_Helitron 153194 155119 520 - . . scaffold490 WUBlastX RC_Helitron 154418 155941 301 - . . scaffold490 TRF Tandem_Repeat 155957 155990 68 + . . scaffold490 WUBlastX LINE_L1-Tx1 157512 157745 44 - . . scaffold490 WUBlastX LINE_L1-Tx1 158140 158547 49 - . . scaffold490 TRF Tandem_Repeat 161146 162228 1322 + . . scaffold490 TRF Tandem_Repeat 163995 164037 70 + . . scaffold490 TRF Tandem_Repeat 163999 164036 51 + . . scaffold490 WUBlastX LINE_Penelope 171090 171284 37 - . . scaffold490 TRF Tandem_Repeat 171673 171726 99 + . . scaffold490 WUBlastX LTR_Pao 177675 178565 837 - . . scaffold490 WUBlastX LTR_Pao 178555 178968 388 - . . scaffold490 WUBlastX DNA_Harbinger 199131 199457 81 + . . scaffold490 WUBlastX DNA_Harbinger 200690 200812 49 - . . scaffold490 WUBlastX DNA_Harbinger 200900 201280 165 - . . scaffold490 WUBlastX DNA_Harbinger 200906 201172 215 - . . scaffold490 WUBlastX DNA_Harbinger 201287 201586 70 - . . scaffold490 WUBlastX DNA_Harbinger 201335 201550 122 - . . scaffold490 WUBlastX DNA_Harbinger 201359 201664 44 - . . scaffold490 WUBlastX DNA_Harbinger 201902 201955 22 - . . scaffold490 WUBlastX DNA_Harbinger 202247 202468 73 - . . scaffold490 WUBlastX DNA_Harbinger 202247 202429 78 - . . scaffold490 TRF Tandem_Repeat 214878 217086 1846 + . . scaffold490 TRF Tandem_Repeat 214878 217086 2539 + . . scaffold490 TRF Tandem_Repeat 214925 217086 2498 + . . scaffold490 TRF Tandem_Repeat 217885 218334 307 + . . scaffold491 WUBlastX LINE_L2 16469 16603 54 + . . scaffold491 WUBlastX LINE_L2 16608 16724 36 + . . scaffold491 TRF Tandem_Repeat 19983 20052 72 + . . scaffold491 GLEAN mRNA 20441 25555 0.994918 - . ID=CGI_10006648; scaffold491 WUBlastX LTR_Ngaro 20712 21191 166 - . . scaffold491 GLEAN promoter 25556 26555 0.994918 - . ID=CGI_10006648; scaffold491 TRF Tandem_Repeat 26820 26857 76 + . . scaffold491 TRF Tandem_Repeat 28389 28495 207 + . . scaffold491 GLEAN promoter 36754 37753 0.304389 + . ID=CGI_10006649; scaffold491 GLEAN mRNA 37754 47413 0.304389 + . ID=CGI_10006649; scaffold491 TRF Tandem_Repeat 39541 39589 62 + . . scaffold491 WUBlastX LTR_Pao 45833 46468 22 + . . scaffold491 TRF Tandem_Repeat 47753 47787 70 + . . scaffold491 WUBlastX LINE_L2 48879 49217 59 + . . scaffold491 WUBlastX LINE_L2 48915 49442 53 + . . scaffold491 GLEAN promoter 53109 54108 0.709565 + . ID=CGI_10006650; scaffold491 GLEAN mRNA 54109 55557 0.709565 + . ID=CGI_10006650; scaffold491 GLEAN promoter 57164 58163 0.928771 + . ID=CGI_10006651; scaffold491 GLEAN mRNA 58164 58367 0.928771 + . ID=CGI_10006651; scaffold491 GLEAN promoter 61858 62857 0.994467 + . ID=CGI_10006652; scaffold491 GLEAN mRNA 62858 63292 0.994467 + . ID=CGI_10006652; scaffold491 GLEAN mRNA 69620 88768 0.999025 - . ID=CGI_10006653; scaffold491 TRF Tandem_Repeat 71737 72488 1024 + . . scaffold491 TRF Tandem_Repeat 73397 73442 92 + . . scaffold491 TRF Tandem_Repeat 75744 75773 51 + . . scaffold491 TRF Tandem_Repeat 77832 78224 579 + . . scaffold491 GLEAN promoter 88769 89768 0.999025 - . ID=CGI_10006653; scaffold491 TRF Tandem_Repeat 91277 91400 85 + . . scaffold491 GLEAN promoter 93484 94483 0.839439 + . ID=CGI_10006654; scaffold491 GLEAN mRNA 94484 100319 0.839439 + . ID=CGI_10006654; scaffold491 TRF Tandem_Repeat 94557 94595 78 + . . scaffold491 TRF Tandem_Repeat 97194 98088 1188 + . . scaffold491 GLEAN mRNA 104876 105295 0.733461 - . ID=CGI_10006655; scaffold491 GLEAN promoter 105296 106295 0.733461 - . ID=CGI_10006655; scaffold491 TRF Tandem_Repeat 106150 106201 104 + . . scaffold491 TRF Tandem_Repeat 153288 153521 252 + . . scaffold492 TRF Tandem_Repeat 7212 7261 100 + . . scaffold492 TRF Tandem_Repeat 7702 7854 96 + . . scaffold492 TRF Tandem_Repeat 12012 12045 68 + . . scaffold492 TRF Tandem_Repeat 14183 14247 121 + . . scaffold492 GLEAN promoter 16947 17946 0.999997 + . ID=CGI_10024807; scaffold492 GLEAN mRNA 17947 18999 0.999997 + . ID=CGI_10024807; scaffold492 TRF Tandem_Repeat 25532 25578 94 + . . scaffold492 TRF Tandem_Repeat 32213 32253 82 + . . scaffold492 GLEAN mRNA 38229 39627 1 - . ID=CGI_10024808; scaffold492 GLEAN promoter 39628 40627 1 - . ID=CGI_10024808; scaffold492 TRF Tandem_Repeat 40488 40545 98 + . . scaffold492 TRF Tandem_Repeat 40843 41013 238 + . . scaffold492 GLEAN promoter 48732 49731 0.999991 + . ID=CGI_10024809; scaffold492 GLEAN mRNA 49732 50902 0.999991 + . ID=CGI_10024809; scaffold492 TRF Tandem_Repeat 56160 56200 64 + . . scaffold492 TRF Tandem_Repeat 61506 61536 62 + . . scaffold492 TRF Tandem_Repeat 74173 74218 92 + . . scaffold492 WUBlastX DNA_Harbinger 81087 81329 65 + . . scaffold492 WUBlastX DNA_Harbinger 81280 81723 211 + . . scaffold492 WUBlastX DNA_Harbinger 81741 82040 84 + . . scaffold492 WUBlastX DNA_Harbinger 82656 82928 23 - . . scaffold492 WUBlastX DNA_Harbinger 82713 82928 32 - . . scaffold492 WUBlastX LINE_L2 89060 89947 97 - . . scaffold492 WUBlastX LINE_L2 89411 89947 197 - . . scaffold492 WUBlastX LINE_L2 89879 90349 272 - . . scaffold492 WUBlastX LINE_L2 90355 91293 253 - . . scaffold492 WUBlastX RC_Helitron 91084 91338 78 - . . scaffold492 WUBlastX LINE_L1 91371 91466 26 - . . scaffold492 WUBlastX LINE_L2 91570 91701 42 - . . scaffold492 WUBlastX LINE_L2 91582 91731 29 - . . scaffold492 GLEAN mRNA 113593 113832 0.695642 - . ID=CGI_10024810; scaffold492 WUBlastX LTR_Gypsy-Troyk 113626 115584 1085 - . . scaffold492 GLEAN promoter 113833 114832 0.695642 - . ID=CGI_10024810; scaffold492 WUBlastX LTR_Gypsy-Troyk 115175 116746 1361 - . . scaffold492 WUBlastX LTR_Gypsy-Troyk 116754 116897 36 - . . scaffold492 WUBlastX LTR_Gypsy-Troyk 116896 117954 384 - . . scaffold492 WUBlastX LTR_Gypsy-Troyk 117115 118422 1005 - . . scaffold492 WUBlastX LTR_Gypsy-Troyk 118422 118481 52 - . . scaffold492 WUBlastX LTR_Gypsy 118432 118521 22 - . . scaffold492 TRF Tandem_Repeat 133839 133943 83 + . . scaffold492 TRF Tandem_Repeat 135104 135208 103 + . . scaffold492 WUBlastX LINE_CR1 162482 162607 52 + . . scaffold492 WUBlastX LINE_CR1-L2 162591 162881 50 + . . scaffold492 WUBlastX LINE_CR1-L2 162591 162986 37 + . . scaffold492 TRF Tandem_Repeat 174403 174429 54 + . . scaffold492 TRF Tandem_Repeat 175705 175824 206 + . . scaffold492 TRF Tandem_Repeat 175873 175966 125 + . . scaffold492 TRF Tandem_Repeat 176599 176737 84 + . . scaffold492 GLEAN mRNA 179108 189466 1 - . ID=CGI_10024811; scaffold492 TRF Tandem_Repeat 179302 179609 490 + . . scaffold492 WUBlastX LINE_L1-Tx1 179837 180724 167 + . . scaffold492 GLEAN promoter 189467 190466 1 - . ID=CGI_10024811; scaffold492 GLEAN promoter 191201 192200 0.836238 + . ID=CGI_10024812; scaffold492 GLEAN mRNA 192201 195000 0.836238 + . ID=CGI_10024812; scaffold492 GLEAN promoter 195390 196389 0.791674 + . ID=CGI_10024813; scaffold492 GLEAN mRNA 196390 218275 0.791674 + . ID=CGI_10024813; scaffold492 TRF Tandem_Repeat 200615 200658 52 + . . scaffold492 WUBlastX DNA_TcMar-Tc1 201627 202487 261 - . . scaffold492 TRF Tandem_Repeat 207481 207544 69 + . . scaffold492 GLEAN mRNA 225191 235729 1 - . ID=CGI_10024814; scaffold492 GLEAN promoter 235730 236729 1 - . ID=CGI_10024814; scaffold492 TRF Tandem_Repeat 243130 243169 80 + . . scaffold492 GLEAN mRNA 245787 248605 1 - . ID=CGI_10024815; scaffold492 GLEAN promoter 248606 249605 1 - . ID=CGI_10024815; scaffold492 GLEAN mRNA 251373 254159 1 - . ID=CGI_10024816; scaffold492 GLEAN promoter 254160 255159 1 - . ID=CGI_10024816; scaffold492 GLEAN promoter 261699 262698 0.999376 + . ID=CGI_10024817; scaffold492 GLEAN mRNA 262699 267863 0.999376 + . ID=CGI_10024817; scaffold492 GLEAN promoter 267203 268202 0.999027 + . ID=CGI_10024818; scaffold492 GLEAN mRNA 268203 287677 0.999027 + . ID=CGI_10024818; scaffold492 WUBlastX LINE_L2 268288 269298 264 - . . scaffold492 WUBlastX LINE_CR1 268705 269418 33 - . . scaffold492 TRF Tandem_Repeat 289371 289450 62 + . . scaffold492 TRF Tandem_Repeat 289380 289593 70 + . . scaffold492 TRF Tandem_Repeat 291231 291306 61 + . . scaffold492 GLEAN mRNA 294095 294307 0.999375 - . ID=CGI_10024819; scaffold492 GLEAN promoter 294308 295307 0.999375 - . ID=CGI_10024819; scaffold492 TRF Tandem_Repeat 298816 298854 78 + . . scaffold492 GLEAN mRNA 300847 302371 1 - . ID=CGI_10024821; scaffold492 GLEAN promoter 302372 303371 1 - . ID=CGI_10024821; scaffold492 GLEAN mRNA 325435 326724 0.999662 - . ID=CGI_10024822; scaffold492 GLEAN promoter 326725 327724 0.999662 - . ID=CGI_10024822; scaffold492 GLEAN promoter 332845 333844 0.661679 + . ID=CGI_10024823; scaffold492 GLEAN mRNA 333845 337012 0.661679 + . ID=CGI_10024823; scaffold492 GLEAN mRNA 337031 337600 0.99998 - . ID=CGI_10024824; scaffold492 GLEAN promoter 337601 338600 0.99998 - . ID=CGI_10024824; scaffold492 GLEAN promoter 343244 344243 1 + . ID=CGI_10024825; scaffold492 GLEAN mRNA 344244 345458 1 + . ID=CGI_10024825; scaffold492 GLEAN promoter 344766 345765 0.836758 + . ID=CGI_10024826; scaffold492 GLEAN mRNA 345766 348715 0.836758 + . ID=CGI_10024826; scaffold492 GLEAN mRNA 352950 354176 0.999998 - . ID=CGI_10024827; scaffold492 GLEAN promoter 354177 355176 0.999998 - . ID=CGI_10024827; scaffold492 GLEAN promoter 355506 356505 0.999998 + . ID=CGI_10024828; scaffold492 TRF Tandem_Repeat 356216 356265 84 + . . scaffold492 GLEAN mRNA 356506 356739 0.999998 + . ID=CGI_10024828; scaffold492 GLEAN promoter 357529 358528 0.999992 + . ID=CGI_10024829; scaffold492 GLEAN mRNA 358529 359425 0.999992 + . ID=CGI_10024829; scaffold492 TRF Tandem_Repeat 359728 359781 51 + . . scaffold492 TRF Tandem_Repeat 366102 366138 74 + . . scaffold492 TRF Tandem_Repeat 369023 369097 150 + . . scaffold492 GLEAN promoter 370525 371524 1 + . ID=CGI_10024830; scaffold492 GLEAN mRNA 371525 372598 1 + . ID=CGI_10024830; scaffold492 TRF Tandem_Repeat 376975 377637 707 + . . scaffold492 GLEAN mRNA 378326 391960 0.991891 - . ID=CGI_10024831; scaffold492 GLEAN promoter 391961 392960 0.991891 - . ID=CGI_10024831; scaffold492 GLEAN mRNA 395604 400629 0.995709 - . ID=CGI_10024832; scaffold492 TRF Tandem_Repeat 397081 397153 146 + . . scaffold492 TRF Tandem_Repeat 397428 397463 72 + . . scaffold492 GLEAN promoter 399505 400504 0.721334 + . ID=CGI_10024833; scaffold492 GLEAN mRNA 400505 404381 0.721334 + . ID=CGI_10024833; scaffold492 GLEAN promoter 400630 401629 0.995709 - . ID=CGI_10024832; scaffold492 GLEAN mRNA 405666 428334 0.820696 - . ID=CGI_10024834; scaffold492 WUBlastX LINE_L2 415783 415995 56 + . . scaffold492 TRF Tandem_Repeat 416254 416309 112 + . . scaffold492 GLEAN promoter 428335 429334 0.820696 - . ID=CGI_10024834; scaffold492 GLEAN mRNA 430618 435399 1 - . ID=CGI_10024835; scaffold492 WUBlastX LINE_RTE-X 432655 432942 68 + . . scaffold492 WUBlastX LINE_RTE-X 432745 432942 77 + . . scaffold492 WUBlastX LINE_RTE-X 432760 433065 67 + . . scaffold492 GLEAN promoter 435400 436399 1 - . ID=CGI_10024835; scaffold492 GLEAN promoter 439262 440261 0.878616 + . ID=CGI_10024836; scaffold492 GLEAN mRNA 440262 450143 0.878616 + . ID=CGI_10024836; scaffold492 WUBlastX LINE_RTE-X 442153 442215 25 + . . scaffold492 WUBlastX LINE_RTE-X 442211 442327 27 + . . scaffold492 GLEAN mRNA 452059 453146 1 - . ID=CGI_10024837; scaffold492 GLEAN promoter 453147 454146 1 - . ID=CGI_10024837; scaffold492 GLEAN mRNA 456400 472080 0.999676 - . ID=CGI_10024838; scaffold492 TRF Tandem_Repeat 470921 470981 95 + . . scaffold492 TRF Tandem_Repeat 471260 471286 54 + . . scaffold492 GLEAN promoter 472081 473080 0.999676 - . ID=CGI_10024838; scaffold492 TRF Tandem_Repeat 473835 473887 99 + . . scaffold492 GLEAN promoter 482949 483948 0.817796 + . ID=CGI_10024839; scaffold492 GLEAN mRNA 483949 488409 0.817796 + . ID=CGI_10024839; scaffold492 GLEAN mRNA 491027 504461 0.999624 - . ID=CGI_10024840; scaffold492 GLEAN promoter 504462 505461 0.999624 - . ID=CGI_10024840; scaffold492 GLEAN mRNA 515600 522558 0.964755 - . ID=CGI_10024841; scaffold492 GLEAN promoter 522512 523511 0.998336 + . ID=CGI_10024842; scaffold492 GLEAN promoter 522559 523558 0.964755 - . ID=CGI_10024841; scaffold492 GLEAN mRNA 523512 527531 0.998336 + . ID=CGI_10024842; scaffold492 TRF Tandem_Repeat 525295 525380 59 + . . scaffold492 TRF Tandem_Repeat 529614 529663 54 + . . scaffold492 GLEAN mRNA 532830 533900 1 - . ID=CGI_10024843; scaffold492 GLEAN promoter 533901 534900 1 - . ID=CGI_10024843; scaffold492 GLEAN promoter 536778 537777 0.999949 + . ID=CGI_10024844; scaffold492 TRF Tandem_Repeat 537455 537480 52 + . . scaffold492 GLEAN mRNA 537778 553960 0.999949 + . ID=CGI_10024844; scaffold492 TRF Tandem_Repeat 539321 539386 132 + . . scaffold492 GLEAN promoter 565375 566374 0.657585 + . ID=CGI_10024845; scaffold492 GLEAN mRNA 566375 570236 0.657585 + . ID=CGI_10024845; scaffold492 GLEAN mRNA 575402 578076 0.999952 - . ID=CGI_10024846; scaffold492 GLEAN promoter 577540 578539 0.745892 + . ID=CGI_10024847; scaffold492 GLEAN promoter 578077 579076 0.999952 - . ID=CGI_10024846; scaffold492 GLEAN mRNA 578540 603982 0.745892 + . ID=CGI_10024847; scaffold492 GLEAN mRNA 607595 613389 0.667613 - . ID=CGI_10024848; scaffold492 TRF Tandem_Repeat 612039 612084 92 + . . scaffold492 TRF Tandem_Repeat 612461 612510 100 + . . scaffold492 GLEAN promoter 613390 614389 0.667613 - . ID=CGI_10024848; scaffold492 GLEAN mRNA 614231 614530 0.489668 - . ID=CGI_10024849; scaffold492 WUBlastX LINE_RTE-X 614438 615319 99 - . . scaffold492 GLEAN promoter 614531 615530 0.489668 - . ID=CGI_10024849; scaffold492 TRF Tandem_Repeat 620580 620866 220 + . . scaffold492 TRF Tandem_Repeat 620637 620847 228 + . . scaffold492 TRF Tandem_Repeat 621628 621789 107 + . . scaffold492 TRF Tandem_Repeat 623822 623864 86 + . . scaffold492 GLEAN promoter 623941 624940 1 + . ID=CGI_10024850; scaffold492 TRF Tandem_Repeat 624138 624204 134 + . . scaffold492 TRF Tandem_Repeat 624147 624204 62 + . . scaffold492 GLEAN mRNA 624941 638206 1 + . ID=CGI_10024850; scaffold492 TRF Tandem_Repeat 640284 640336 106 + . . scaffold492 GLEAN promoter 647780 648779 0.99939 + . ID=CGI_10024851; scaffold492 TRF Tandem_Repeat 648392 648452 122 + . . scaffold492 GLEAN mRNA 648780 654697 0.99939 + . ID=CGI_10024851; scaffold492 GLEAN mRNA 654618 664978 1 - . ID=CGI_10024852; scaffold492 TRF Tandem_Repeat 655954 658098 3166 + . . scaffold492 TRF Tandem_Repeat 655955 658098 3185 + . . scaffold492 GLEAN promoter 664979 665978 1 - . ID=CGI_10024852; scaffold492 GLEAN promoter 667859 668858 0.999959 + . ID=CGI_10024853; scaffold492 GLEAN mRNA 668859 669452 0.999959 + . ID=CGI_10024853; scaffold492 TRF Tandem_Repeat 670299 670334 72 + . . scaffold492 TRF Tandem_Repeat 674351 674407 114 + . . scaffold492 TRF Tandem_Repeat 679969 681583 1328 + . . scaffold492 GLEAN promoter 681896 682895 0.994319 + . ID=CGI_10024854; scaffold492 GLEAN mRNA 682896 699716 0.994319 + . ID=CGI_10024854; scaffold492 TRF Tandem_Repeat 683665 684061 749 + . . scaffold492 GLEAN mRNA 684831 706725 0.837733 - . ID=CGI_10024855; scaffold492 GLEAN promoter 706726 707725 0.837733 - . ID=CGI_10024855; scaffold492 GLEAN mRNA 707172 709145 1 - . ID=CGI_10024856; scaffold492 GLEAN promoter 709146 710145 1 - . ID=CGI_10024856; scaffold492 GLEAN mRNA 709224 711247 0.999519 - . ID=CGI_10024857; scaffold492 GLEAN promoter 710180 711179 0.215114 + . ID=CGI_10024858; scaffold492 GLEAN mRNA 711180 718761 0.215114 + . ID=CGI_10024858; scaffold492 GLEAN promoter 711248 712247 0.999519 - . ID=CGI_10024857; scaffold492 TRF Tandem_Repeat 719816 719868 106 + . . scaffold492 TRF Tandem_Repeat 720195 720223 58 + . . scaffold492 TRF Tandem_Repeat 733487 733525 78 + . . scaffold492 GLEAN promoter 733940 734939 0.613286 + . ID=CGI_10024859; scaffold492 GLEAN mRNA 734940 737093 0.613286 + . ID=CGI_10024859; scaffold492 GLEAN promoter 745586 746585 1 + . ID=CGI_10024860; scaffold492 GLEAN mRNA 746586 748735 1 + . ID=CGI_10024860; scaffold492 GLEAN promoter 754561 755560 1 + . ID=CGI_10024861; scaffold492 GLEAN mRNA 755561 757880 1 + . ID=CGI_10024861; scaffold492 GLEAN mRNA 772864 774936 0.999619 - . ID=CGI_10024862; scaffold492 GLEAN promoter 774937 775936 0.999619 - . ID=CGI_10024862; scaffold492 GLEAN promoter 780635 781634 0.999992 + . ID=CGI_10024863; scaffold492 GLEAN mRNA 781635 783599 0.999992 + . ID=CGI_10024863; scaffold492 GLEAN promoter 783179 784178 0.999999 + . ID=CGI_10024864; scaffold492 TRF Tandem_Repeat 783303 783332 60 + . . scaffold492 GLEAN mRNA 784179 788157 0.999999 + . ID=CGI_10024864; scaffold492 TRF Tandem_Repeat 791448 791725 384 + . . scaffold492 WUBlastX DNA_IS4EU 796495 797931 841 + . . scaffold492 GLEAN mRNA 798431 799219 1 - . ID=CGI_10024865; scaffold492 WUBlastX DNA_IS4EU 798434 799444 742 - . . scaffold492 GLEAN promoter 799220 800219 1 - . ID=CGI_10024865; scaffold492 WUBlastX DNA_IS4EU 800372 800419 32 - . . scaffold492 WUBlastX DNA_IS4EU 800893 801165 108 - . . scaffold492 TRF Tandem_Repeat 803303 803473 171 + . . scaffold492 GLEAN promoter 808451 809450 1 + . ID=CGI_10024866; scaffold492 GLEAN mRNA 809451 813840 1 + . ID=CGI_10024866; scaffold492 TRF Tandem_Repeat 811710 811757 96 + . . scaffold492 GLEAN promoter 813682 814681 0.946709 + . ID=CGI_10024867; scaffold492 GLEAN mRNA 814682 827277 0.946709 + . ID=CGI_10024867; scaffold492 TRF Tandem_Repeat 819509 819552 88 + . . scaffold492 TRF Tandem_Repeat 829570 829639 131 + . . scaffold492 GLEAN promoter 830420 831419 1 + . ID=CGI_10024868; scaffold492 GLEAN mRNA 831420 832747 1 + . ID=CGI_10024868; scaffold492 GLEAN promoter 841217 842216 0.999676 + . ID=CGI_10024869; scaffold492 GLEAN mRNA 842217 856827 0.999676 + . ID=CGI_10024869; scaffold492 TRF Tandem_Repeat 842374 842408 70 + . . scaffold492 GLEAN promoter 856186 857185 0.999349 + . ID=CGI_10024870; scaffold492 GLEAN mRNA 857186 878137 0.999349 + . ID=CGI_10024870; scaffold492 TRF Tandem_Repeat 861476 861650 136 + . . scaffold492 TRF Tandem_Repeat 865620 865747 238 + . . scaffold492 TRF Tandem_Repeat 868931 869014 59 + . . scaffold492 WUBlastX LINE_RTE-X 874649 874948 48 + . . scaffold492 GLEAN mRNA 875958 879685 0.999531 - . ID=CGI_10024871; scaffold492 GLEAN promoter 879686 880685 0.999531 - . ID=CGI_10024871; scaffold492 GLEAN promoter 880318 881317 0.999998 + . ID=CGI_10024872; scaffold492 GLEAN mRNA 881318 888477 0.999998 + . ID=CGI_10024872; scaffold492 WUBlastX LINE_L2 884502 884735 44 - . . scaffold492 WUBlastX LINE_L2 884622 884828 51 - . . scaffold492 TRF Tandem_Repeat 890130 890913 294 + . . scaffold492 GLEAN promoter 890347 891346 0.999992 + . ID=CGI_10024873; scaffold492 GLEAN mRNA 891347 895946 0.999992 + . ID=CGI_10024873; scaffold492 TRF Tandem_Repeat 894926 895020 190 + . . scaffold492 TRF Tandem_Repeat 895655 895790 191 + . . scaffold492 TRF Tandem_Repeat 895837 895967 203 + . . scaffold492 TRF Tandem_Repeat 896896 897560 947 + . . scaffold492 TRF Tandem_Repeat 896896 897560 963 + . . scaffold492 TRF Tandem_Repeat 896896 897560 963 + . . scaffold492 GLEAN promoter 898260 899259 0.996603 + . ID=CGI_10024874; scaffold492 TRF Tandem_Repeat 898604 898798 291 + . . scaffold492 GLEAN mRNA 899260 903019 0.996603 + . ID=CGI_10024874; scaffold492 TRF Tandem_Repeat 902009 902324 400 + . . scaffold492 TRF Tandem_Repeat 902009 902324 377 + . . scaffold492 TRF Tandem_Repeat 904654 904744 67 + . . scaffold492 TRF Tandem_Repeat 906206 908458 1528 + . . scaffold492 TRF Tandem_Repeat 906278 907965 688 + . . scaffold492 TRF Tandem_Repeat 908984 909178 345 + . . scaffold492 TRF Tandem_Repeat 938266 938302 74 + . . scaffold492 TRF Tandem_Repeat 939376 939419 88 + . . scaffold492 WUBlastX LTR_DIRS 943454 943954 113 + . . scaffold492 WUBlastX LTR_Gypsy 944069 944134 24 + . . scaffold492 WUBlastX LTR_Gypsy 944084 944134 24 + . . scaffold492 WUBlastX LTR_DIRS 944229 944402 119 + . . scaffold492 WUBlastX LTR_DIRS 944378 946087 717 + . . scaffold492 WUBlastX LTR_DIRS 946394 947362 505 + . . scaffold492 TRF Tandem_Repeat 952655 952711 114 + . . scaffold492 TRF Tandem_Repeat 955201 955255 92 + . . scaffold492 GLEAN promoter 955841 956840 0.999822 + . ID=CGI_10024875; scaffold492 GLEAN mRNA 956841 962743 0.999822 + . ID=CGI_10024875; scaffold492 TRF Tandem_Repeat 959672 959757 102 + . . scaffold492 TRF Tandem_Repeat 959672 959757 129 + . . scaffold492 TRF Tandem_Repeat 959680 959754 114 + . . scaffold492 TRF Tandem_Repeat 959927 961111 1654 + . . scaffold492 GLEAN mRNA 970682 976317 0.562435 - . ID=CGI_10024876; scaffold492 TRF Tandem_Repeat 973414 973491 99 + . . scaffold492 TRF Tandem_Repeat 974779 974829 95 + . . scaffold492 GLEAN promoter 976318 977317 0.562435 - . ID=CGI_10024876; scaffold492 TRF Tandem_Repeat 980086 980123 76 + . . scaffold492 WUBlastX DNA_Harbinger 980326 980487 42 + . . scaffold493 WUBlastX LINE_RTE-X 369 737 61 - . . scaffold493 WUBlastX LINE_RTE-X 444 713 77 - . . scaffold493 WUBlastX LINE_RTE-X 504 773 79 - . . scaffold493 WUBlastX LINE_RTE-X 778 2214 715 + . . scaffold493 TRF Tandem_Repeat 19142 19283 214 + . . scaffold493 GLEAN promoter 19233 20232 0.890452 + . ID=CGI_10007244; scaffold493 GLEAN mRNA 20233 25557 0.890452 + . ID=CGI_10007244; scaffold493 TRF Tandem_Repeat 22688 23272 644 + . . scaffold493 TRF Tandem_Repeat 22688 23272 449 + . . scaffold493 TRF Tandem_Repeat 22707 23272 701 + . . scaffold493 TRF Tandem_Repeat 26235 26384 149 + . . scaffold493 TRF Tandem_Repeat 26236 26384 120 + . . scaffold493 TRF Tandem_Repeat 28575 28623 98 + . . scaffold493 GLEAN mRNA 29508 32740 1 - . ID=CGI_10007245; scaffold493 TRF Tandem_Repeat 31535 31738 103 + . . scaffold493 GLEAN promoter 32582 33581 0.999595 + . ID=CGI_10007246; scaffold493 GLEAN promoter 32741 33740 1 - . ID=CGI_10007245; scaffold493 GLEAN mRNA 33582 40988 0.999595 + . ID=CGI_10007246; scaffold493 WUBlastX LINE_RTE-X 36106 36345 44 + . . scaffold493 WUBlastX LINE_RTE-X 36208 36336 79 + . . scaffold493 WUBlastX LINE_RTE-X 36214 36402 34 + . . scaffold493 WUBlastX LINE_RTE-X 36214 36360 48 + . . scaffold493 TRF Tandem_Repeat 49721 49906 216 + . . scaffold493 TRF Tandem_Repeat 53222 53282 104 + . . scaffold493 GLEAN promoter 56003 57002 0.916759 + . ID=CGI_10007247; scaffold493 GLEAN mRNA 57003 100421 0.916759 + . ID=CGI_10007247; scaffold493 TRF Tandem_Repeat 62919 62968 100 + . . scaffold493 TRF Tandem_Repeat 64043 64090 96 + . . scaffold493 WUBlastX LINE_RTE-X 74273 74779 43 - . . scaffold493 WUBlastX LINE_RTE-X 74384 74767 67 - . . scaffold493 TRF Tandem_Repeat 79420 79461 59 + . . scaffold493 TRF Tandem_Repeat 79631 80477 1273 + . . scaffold493 TRF Tandem_Repeat 82969 83106 75 + . . scaffold493 TRF Tandem_Repeat 83114 83293 148 + . . scaffold493 TRF Tandem_Repeat 96803 96944 92 + . . scaffold493 TRF Tandem_Repeat 96948 97130 188 + . . scaffold493 TRF Tandem_Repeat 96948 97148 154 + . . scaffold493 TRF Tandem_Repeat 100298 100332 70 + . . scaffold493 WUBlastX LINE_L2 102092 102520 92 + . . scaffold493 GLEAN promoter 104481 105480 0.99385 + . ID=CGI_10007248; scaffold493 GLEAN mRNA 105481 128360 0.99385 + . ID=CGI_10007248; scaffold493 TRF Tandem_Repeat 113812 113847 72 + . . scaffold493 GLEAN mRNA 131525 132988 0.634779 - . ID=CGI_10007249; scaffold493 TRF Tandem_Repeat 131826 131971 211 + . . scaffold493 TRF Tandem_Repeat 131877 131970 74 + . . scaffold493 GLEAN promoter 132989 133988 0.634779 - . ID=CGI_10007249; scaffold493 GLEAN promoter 157443 158442 0.999991 + . ID=CGI_10007250; scaffold493 TRF Tandem_Repeat 158252 158307 112 + . . scaffold493 GLEAN mRNA 158443 165350 0.999991 + . ID=CGI_10007250; scaffold493 WUBlastX LINE_L1-Tx1 158591 158965 46 + . . scaffold493 WUBlastX LINE_L1-Tx1 158597 158860 76 + . . scaffold493 TRF Tandem_Repeat 165450 165495 67 + . . scaffold493 GLEAN mRNA 172313 172903 0.59015 - . ID=CGI_10007251; scaffold493 GLEAN promoter 172904 173903 0.59015 - . ID=CGI_10007251; scaffold494 GLEAN mRNA 10220 15842 1 - . ID=CGI_10002172; scaffold494 GLEAN promoter 15843 16842 1 - . ID=CGI_10002172; scaffold494 GLEAN promoter 18913 19912 0.807668 + . ID=CGI_10002173; scaffold494 GLEAN mRNA 19913 35198 0.807668 + . ID=CGI_10002173; scaffold496 GLEAN mRNA 347 2825 1 - . ID=CGI_10022430; scaffold496 GLEAN promoter 2826 3825 1 - . ID=CGI_10022430; scaffold496 GLEAN promoter 26205 27204 0.999999 + . ID=CGI_10022431; scaffold496 TRF Tandem_Repeat 27121 27163 86 + . . scaffold496 GLEAN mRNA 27205 27581 0.999999 + . ID=CGI_10022431; scaffold496 TRF Tandem_Repeat 29513 29752 252 + . . scaffold496 GLEAN promoter 29969 30968 0.999896 + . ID=CGI_10022432; scaffold496 GLEAN mRNA 30969 35247 0.999896 + . ID=CGI_10022432; scaffold496 TRF Tandem_Repeat 32279 32323 90 + . . scaffold496 GLEAN promoter 38387 39386 0.999949 + . ID=CGI_10022433; scaffold496 GLEAN mRNA 39387 43525 0.999949 + . ID=CGI_10022433; scaffold496 TRF Tandem_Repeat 49626 49686 122 + . . scaffold496 GLEAN mRNA 52093 56102 0.993907 - . ID=CGI_10022434; scaffold496 GLEAN promoter 56103 57102 0.993907 - . ID=CGI_10022434; scaffold496 GLEAN promoter 56940 57939 0.978966 + . ID=CGI_10022435; scaffold496 GLEAN mRNA 57940 59848 0.978966 + . ID=CGI_10022435; scaffold496 GLEAN promoter 63917 64916 0.999898 + . ID=CGI_10022436; scaffold496 GLEAN mRNA 64917 68327 0.999898 + . ID=CGI_10022436; scaffold496 GLEAN mRNA 70534 85091 0.499838 - . ID=CGI_10022437; scaffold496 GLEAN promoter 77446 78445 0.999846 + . ID=CGI_10022438; scaffold496 GLEAN mRNA 78446 84685 0.999846 + . ID=CGI_10022438; scaffold496 GLEAN promoter 84263 85262 1 + . ID=CGI_10022439; scaffold496 GLEAN promoter 85092 86091 0.499838 - . ID=CGI_10022437; scaffold496 GLEAN mRNA 85263 86216 1 + . ID=CGI_10022439; scaffold496 GLEAN mRNA 87689 89718 1 - . ID=CGI_10022440; scaffold496 GLEAN promoter 89719 90718 1 - . ID=CGI_10022440; scaffold496 GLEAN mRNA 93479 102662 1 - . ID=CGI_10022441; scaffold496 GLEAN promoter 102663 103662 1 - . ID=CGI_10022441; scaffold496 GLEAN mRNA 114656 117611 1 - . ID=CGI_10022442; scaffold496 GLEAN promoter 117612 118611 1 - . ID=CGI_10022442; scaffold496 TRF Tandem_Repeat 118154 118191 76 + . . scaffold496 TRF Tandem_Repeat 120900 120948 98 + . . scaffold496 TRF Tandem_Repeat 128770 128808 78 + . . scaffold496 TRF Tandem_Repeat 128961 129011 102 + . . scaffold496 TRF Tandem_Repeat 133702 133756 110 + . . scaffold496 GLEAN promoter 139058 140057 0.0705197 + . ID=CGI_10022443; scaffold496 GLEAN mRNA 140058 157660 0.0705197 + . ID=CGI_10022443; scaffold496 GLEAN mRNA 149863 160492 1 - . ID=CGI_10022444; scaffold496 GLEAN promoter 160493 161492 1 - . ID=CGI_10022444; scaffold496 GLEAN promoter 162305 163304 0.0977967 + . ID=CGI_10022445; scaffold496 GLEAN mRNA 163305 178254 0.0977967 + . ID=CGI_10022445; scaffold496 GLEAN mRNA 168196 175818 1 - . ID=CGI_10022446; scaffold496 GLEAN promoter 175819 176818 1 - . ID=CGI_10022446; scaffold496 GLEAN promoter 178602 179601 0.215286 + . ID=CGI_10022447; scaffold496 TRF Tandem_Repeat 179346 179386 82 + . . scaffold496 GLEAN mRNA 179602 182423 0.215286 + . ID=CGI_10022447; scaffold496 GLEAN mRNA 181480 266652 0.248463 - . ID=CGI_10022448; scaffold496 TRF Tandem_Repeat 191997 192044 96 + . . scaffold496 TRF Tandem_Repeat 192044 192075 64 + . . scaffold496 TRF Tandem_Repeat 197554 197589 72 + . . scaffold496 TRF Tandem_Repeat 204551 204589 78 + . . scaffold496 GLEAN promoter 249677 250676 0.749037 + . ID=CGI_10022449; scaffold496 GLEAN mRNA 250677 267390 0.749037 + . ID=CGI_10022449; scaffold496 TRF Tandem_Repeat 260838 260984 213 + . . scaffold496 WUBlastX DNA_hAT 266395 266859 73 + . . scaffold496 GLEAN promoter 266653 267652 0.248463 - . ID=CGI_10022448; scaffold496 GLEAN promoter 271762 272761 0.351349 + . ID=CGI_10022450; scaffold496 GLEAN mRNA 272762 283159 0.351349 + . ID=CGI_10022450; scaffold496 TRF Tandem_Repeat 276084 276198 67 + . . scaffold496 TRF Tandem_Repeat 276086 276212 107 + . . scaffold496 TRF Tandem_Repeat 276102 276217 223 + . . scaffold496 TRF Tandem_Repeat 279772 279835 85 + . . scaffold496 TRF Tandem_Repeat 279787 279834 71 + . . scaffold496 GLEAN promoter 283554 284553 0.934292 + . ID=CGI_10022451; scaffold496 GLEAN mRNA 284554 289142 0.934292 + . ID=CGI_10022451; scaffold496 WUBlastX LTR_Ngaro 285454 285987 60 + . . scaffold496 WUBlastX LTR_Ngaro 285553 286002 94 + . . scaffold496 WUBlastX LTR_Ngaro 285736 285975 135 + . . scaffold496 WUBlastX LTR_Ngaro 285980 286087 48 + . . scaffold496 WUBlastX LTR_Ngaro 286095 286247 39 + . . scaffold496 WUBlastX LTR_Ngaro 286119 286403 73 + . . scaffold496 WUBlastX LTR_Ngaro 286253 286963 173 - . . scaffold496 GLEAN mRNA 291518 295934 1 - . ID=CGI_10022452; scaffold496 TRF Tandem_Repeat 292405 292465 50 + . . scaffold496 GLEAN promoter 295935 296934 1 - . ID=CGI_10022452; scaffold496 TRF Tandem_Repeat 298892 298944 106 + . . scaffold496 TRF Tandem_Repeat 308169 308232 65 + . . scaffold496 TRF Tandem_Repeat 308172 308230 100 + . . scaffold496 TRF Tandem_Repeat 308172 308232 86 + . . scaffold496 GLEAN mRNA 309199 311216 1 - . ID=CGI_10022453; scaffold496 GLEAN promoter 310255 311254 0.593353 + . ID=CGI_10022454; scaffold496 GLEAN promoter 311217 312216 1 - . ID=CGI_10022453; scaffold496 GLEAN mRNA 311255 315561 0.593353 + . ID=CGI_10022454; scaffold496 GLEAN mRNA 319630 322182 0.999999 - . ID=CGI_10022455; scaffold496 GLEAN promoter 322183 323182 0.999999 - . ID=CGI_10022455; scaffold496 TRF Tandem_Repeat 328083 328118 72 + . . scaffold496 TRF Tandem_Repeat 329113 329152 80 + . . scaffold496 TRF Tandem_Repeat 330676 330733 53 + . . scaffold496 TRF Tandem_Repeat 330677 330711 52 + . . scaffold496 TRF Tandem_Repeat 334157 334224 136 + . . scaffold496 TRF Tandem_Repeat 335936 335980 81 + . . scaffold496 TRF Tandem_Repeat 338751 338802 104 + . . scaffold496 GLEAN mRNA 338863 340200 1 - . ID=CGI_10022456; scaffold496 GLEAN promoter 340201 341200 1 - . ID=CGI_10022456; scaffold496 TRF Tandem_Repeat 348491 348527 74 + . . scaffold496 TRF Tandem_Repeat 349395 349501 196 + . . scaffold496 GLEAN promoter 350762 351761 0.384848 + . ID=CGI_10022457; scaffold496 GLEAN mRNA 351762 366672 0.384848 + . ID=CGI_10022457; scaffold496 TRF Tandem_Repeat 353999 354027 58 + . . scaffold496 TRF Tandem_Repeat 367996 368211 137 + . . scaffold496 WUBlastX LINE_RTE-X 386199 386396 22 - . . scaffold496 WUBlastX LINE_L2 386244 386417 44 - . . scaffold496 WUBlastX LINE_CR1 386404 386475 47 - . . scaffold496 WUBlastX LINE_L2 386456 387079 261 - . . scaffold496 WUBlastX LINE_CR1-L2 387109 387435 65 - . . scaffold496 WUBlastX LINE_L2 388050 388127 20 - . . scaffold496 TRF Tandem_Repeat 393225 393288 101 + . . scaffold496 WUBlastX LINE_RTE-X 393709 393921 41 + . . scaffold496 WUBlastX LINE_RTE-X 393745 394077 83 + . . scaffold496 TRF Tandem_Repeat 403543 403609 107 + . . scaffold496 TRF Tandem_Repeat 405886 405950 130 + . . scaffold496 TRF Tandem_Repeat 406967 407036 131 + . . scaffold496 TRF Tandem_Repeat 415192 415286 163 + . . scaffold496 TRF Tandem_Repeat 419422 419491 122 + . . scaffold496 TRF Tandem_Repeat 419605 419667 126 + . . scaffold496 TRF Tandem_Repeat 433900 435094 1309 + . . scaffold496 TRF Tandem_Repeat 439992 440678 790 + . . scaffold496 TRF Tandem_Repeat 451693 452451 817 + . . scaffold496 GLEAN mRNA 464566 475109 0.499096 - . ID=CGI_10022459; scaffold496 TRF Tandem_Repeat 465013 465969 1250 + . . scaffold496 GLEAN promoter 475110 476109 0.499096 - . ID=CGI_10022459; scaffold496 GLEAN promoter 476703 477702 0.360504 + . ID=CGI_10022460; scaffold496 GLEAN mRNA 477703 496536 0.360504 + . ID=CGI_10022460; scaffold496 TRF Tandem_Repeat 494141 494287 73 + . . scaffold496 TRF Tandem_Repeat 494203 494332 93 + . . scaffold496 WUBlastX LINE_L2 498955 499284 92 - . . scaffold496 WUBlastX LINE_CR1-L2 498955 499398 24 - . . scaffold496 GLEAN mRNA 503323 515388 0.887965 - . ID=CGI_10022461; scaffold496 TRF Tandem_Repeat 509398 509461 65 + . . scaffold496 TRF Tandem_Repeat 509424 509470 94 + . . scaffold496 TRF Tandem_Repeat 514173 514229 105 + . . scaffold496 GLEAN promoter 515389 516388 0.887965 - . ID=CGI_10022461; scaffold496 GLEAN promoter 517334 518333 0.998801 + . ID=CGI_10022462; scaffold496 GLEAN mRNA 518334 532055 0.998801 + . ID=CGI_10022462; scaffold496 TRF Tandem_Repeat 539116 539196 162 + . . scaffold496 GLEAN promoter 562455 563454 0.498367 + . ID=CGI_10022464; scaffold496 GLEAN mRNA 563455 571893 0.498367 + . ID=CGI_10022464; scaffold496 WUBlastX LINE_CR1 572079 572372 42 + . . scaffold496 WUBlastX LINE_CR1 572166 572369 60 + . . scaffold496 WUBlastX LINE_CR1 572211 572372 73 + . . scaffold496 GLEAN promoter 573432 574431 1 + . ID=CGI_10022465; scaffold496 TRF Tandem_Repeat 573767 573826 120 + . . scaffold496 GLEAN mRNA 574432 575622 1 + . ID=CGI_10022465; scaffold496 TRF Tandem_Repeat 580289 580346 82 + . . scaffold496 TRF Tandem_Repeat 597263 597358 84 + . . scaffold496 GLEAN promoter 597331 598330 0.990417 + . ID=CGI_10022466; scaffold496 TRF Tandem_Repeat 597796 597825 53 + . . scaffold496 GLEAN mRNA 598331 615214 0.990417 + . ID=CGI_10022466; scaffold496 GLEAN mRNA 605797 613641 0.544852 - . ID=CGI_10022467; scaffold496 GLEAN promoter 613642 614641 0.544852 - . ID=CGI_10022467; scaffold496 GLEAN promoter 616295 617294 0.998406 + . ID=CGI_10022468; scaffold496 GLEAN mRNA 617295 617672 0.998406 + . ID=CGI_10022468; scaffold496 GLEAN promoter 627195 628194 0.0721562 + . ID=CGI_10022469; scaffold496 GLEAN mRNA 628195 633256 0.0721562 + . ID=CGI_10022469; scaffold496 GLEAN promoter 645375 646374 0.775655 + . ID=CGI_10022470; scaffold496 GLEAN mRNA 646375 653147 0.775655 + . ID=CGI_10022470; scaffold496 TRF Tandem_Repeat 652801 652850 100 + . . scaffold496 TRF Tandem_Repeat 655445 656415 1723 + . . scaffold496 WUBlastX LINE_RTE-X 656944 657252 63 + . . scaffold496 WUBlastX LINE_RTE-X 657055 657279 163 + . . scaffold496 WUBlastX LINE_RTE-X 657287 657724 92 + . . scaffold496 WUBlastX LINE_RTE-X 657739 657834 25 + . . scaffold496 GLEAN mRNA 661181 667867 0.999904 - . ID=CGI_10022471; scaffold496 GLEAN promoter 667868 668867 0.999904 - . ID=CGI_10022471; scaffold496 GLEAN mRNA 696329 697850 1 - . ID=CGI_10022472; scaffold496 GLEAN promoter 697851 698850 1 - . ID=CGI_10022472; scaffold496 WUBlastX DNA_NOF? 704194 704520 40 - . . scaffold496 WUBlastX DNA_NOF 704233 704502 44 - . . scaffold496 GLEAN mRNA 713503 727921 0.615833 - . ID=CGI_10022473; scaffold496 WUBlastX LINE_L1-Tx1 725276 725512 69 + . . scaffold496 WUBlastX LINE_CR1 725485 725901 77 + . . scaffold496 GLEAN promoter 727922 728921 0.615833 - . ID=CGI_10022473; scaffold496 TRF Tandem_Repeat 751192 751234 50 + . . scaffold496 WUBlastX LTR_Gypsy 756975 757433 57 + . . scaffold496 WUBlastX LTR_Gypsy 757308 757508 28 + . . scaffold496 WUBlastX LTR_Gypsy 757705 758193 75 + . . scaffold496 WUBlastX LTR_Gypsy 757861 758193 76 + . . scaffold496 WUBlastX LTR_Gypsy 757927 760008 1266 + . . scaffold498 WUBlastX LTR_Gypsy-Troyk 1112 1438 72 - . . scaffold498 WUBlastX LTR_Gypsy 1185 1493 76 - . . scaffold498 TRF Tandem_Repeat 29306 29349 79 + . . scaffold498 TRF Tandem_Repeat 33766 33907 73 + . . scaffold498 TRF Tandem_Repeat 34022 34069 68 + . . scaffold498 TRF Tandem_Repeat 38503 38614 106 + . . scaffold498 TRF Tandem_Repeat 38560 38614 92 + . . scaffold498 WUBlastX LTR_Gypsy 50130 50732 112 - . . scaffold498 WUBlastX LTR_Gypsy 50274 50726 157 - . . scaffold498 WUBlastX LTR_Gypsy 50345 51256 350 - . . scaffold498 WUBlastX LTR_Gypsy 50741 51253 410 - . . scaffold498 WUBlastX LTR_Gypsy 51377 51490 20 - . . scaffold498 WUBlastX LTR_Gypsy 51812 51934 24 - . . scaffold498 WUBlastX LTR_Gypsy 52193 52897 106 - . . scaffold498 WUBlastX LTR_Gypsy 52301 52897 125 - . . scaffold498 TRF Tandem_Repeat 55650 55716 56 + . . scaffold498 TRF Tandem_Repeat 62386 62432 94 + . . scaffold498 TRF Tandem_Repeat 97688 97740 106 + . . scaffold498 GLEAN promoter 109451 110450 0.999372 + . ID=CGI_10012421; scaffold498 GLEAN mRNA 110451 110684 0.999372 + . ID=CGI_10012421; scaffold498 GLEAN mRNA 111798 119002 0.999546 - . ID=CGI_10012422; scaffold498 WUBlastX DNA_En-Spm 113773 115512 1160 - . . scaffold498 WUBlastX DNA_En-Spm 113776 115821 1029 - . . scaffold498 TRF Tandem_Repeat 117550 117828 423 + . . scaffold498 GLEAN promoter 119003 120002 0.999546 - . ID=CGI_10012422; scaffold498 TRF Tandem_Repeat 119251 119305 69 + . . scaffold498 TRF Tandem_Repeat 120360 120413 108 + . . scaffold498 TRF Tandem_Repeat 126528 126585 107 + . . scaffold498 WUBlastX LINE_L1-Tx1 126725 127081 29 - . . scaffold498 WUBlastX LINE_L1-Tx1 127093 127266 37 - . . scaffold498 WUBlastX LINE_L1-Tx1 127093 127353 31 - . . scaffold498 WUBlastX LINE_L1-Tx1 127740 129590 725 - . . scaffold498 WUBlastX LINE_L1-Tx1 129389 130192 309 - . . scaffold498 WUBlastX LINE_L1 130180 130515 32 - . . scaffold498 WUBlastX LINE_L1-Tx1 130204 130458 122 - . . scaffold498 GLEAN mRNA 134104 136141 1 - . ID=CGI_10012423; scaffold498 GLEAN promoter 136142 137141 1 - . ID=CGI_10012423; scaffold498 GLEAN promoter 136753 137752 0.999996 + . ID=CGI_10012424; scaffold498 TRF Tandem_Repeat 137428 137453 52 + . . scaffold498 GLEAN mRNA 137753 138778 0.999996 + . ID=CGI_10012424; scaffold498 GLEAN promoter 138573 139572 0.954973 + . ID=CGI_10012425; scaffold498 GLEAN mRNA 139573 140623 0.954973 + . ID=CGI_10012425; scaffold498 GLEAN promoter 141693 142692 0.954629 + . ID=CGI_10012426; scaffold498 GLEAN mRNA 142693 153953 0.954629 + . ID=CGI_10012426; scaffold498 TRF Tandem_Repeat 143318 143367 100 + . . scaffold498 TRF Tandem_Repeat 144596 144627 55 + . . scaffold498 TRF Tandem_Repeat 146271 146323 106 + . . scaffold498 WUBlastX LTR_Ngaro 155997 156737 207 + . . scaffold498 WUBlastX LTR_Ngaro 156267 156884 75 + . . scaffold498 WUBlastX LTR_Ngaro 156988 157287 189 + . . scaffold498 GLEAN mRNA 185023 189439 0.59187 - . ID=CGI_10012427; scaffold498 GLEAN promoter 189440 190439 0.59187 - . ID=CGI_10012427; scaffold498 WUBlastX LTR_DIRS 190827 191291 75 + . . scaffold498 GLEAN mRNA 193613 194832 1 - . ID=CGI_10012428; scaffold498 GLEAN promoter 194833 195832 1 - . ID=CGI_10012428; scaffold498 TRF Tandem_Repeat 194916 194961 92 + . . scaffold498 GLEAN promoter 204644 205643 0.790288 + . ID=CGI_10012429; scaffold498 TRF Tandem_Repeat 204870 204903 68 + . . scaffold498 GLEAN mRNA 205644 220765 0.790288 + . ID=CGI_10012429; scaffold498 TRF Tandem_Repeat 218824 219512 647 + . . scaffold498 TRF Tandem_Repeat 218824 219512 830 + . . scaffold498 TRF Tandem_Repeat 218824 219512 805 + . . scaffold498 GLEAN promoter 225492 226491 1 + . ID=CGI_10012430; scaffold498 GLEAN mRNA 226492 228374 1 + . ID=CGI_10012430; scaffold498 GLEAN promoter 227451 228450 0.470322 + . ID=CGI_10012431; scaffold498 GLEAN mRNA 228451 286019 0.470322 + . ID=CGI_10012431; scaffold498 WUBlastX DNA_Sola 232021 233472 432 - . . scaffold498 WUBlastX DNA_Sola 232594 233475 442 - . . scaffold498 TRF Tandem_Repeat 237182 238243 1663 + . . scaffold498 TRF Tandem_Repeat 246705 247053 134 + . . scaffold498 TRF Tandem_Repeat 253679 253738 84 + . . scaffold498 TRF Tandem_Repeat 253680 253745 114 + . . scaffold498 TRF Tandem_Repeat 253688 253745 70 + . . scaffold498 TRF Tandem_Repeat 253769 254563 1170 + . . scaffold498 GLEAN mRNA 279312 294271 0.521871 - . ID=CGI_10012432; scaffold498 TRF Tandem_Repeat 282787 282812 52 + . . scaffold498 TRF Tandem_Repeat 285103 285205 80 + . . scaffold498 GLEAN promoter 294272 295271 0.521871 - . ID=CGI_10012432; scaffold498 GLEAN promoter 294776 295775 0.934327 + . ID=CGI_10012433; scaffold498 GLEAN mRNA 295776 300303 0.934327 + . ID=CGI_10012433; scaffold498 TRF Tandem_Repeat 296126 296163 76 + . . scaffold498 TRF Tandem_Repeat 299250 299304 110 + . . scaffold498 GLEAN mRNA 300858 310354 1 - . ID=CGI_10012434; scaffold498 GLEAN promoter 310355 311354 1 - . ID=CGI_10012434; scaffold498 GLEAN mRNA 312475 316861 1 - . ID=CGI_10012435; scaffold498 GLEAN promoter 316862 317861 1 - . ID=CGI_10012435; scaffold498 GLEAN promoter 319315 320314 0.940806 + . ID=CGI_10012436; scaffold498 GLEAN mRNA 320315 320887 0.940806 + . ID=CGI_10012436; scaffold498 TRF Tandem_Repeat 323149 323241 161 + . . scaffold498 WUBlastX LINE_CR1-L2 324328 324954 69 + . . scaffold498 WUBlastX LINE_L2 324424 324957 138 + . . scaffold498 WUBlastX LINE_L1-Tx1 325394 326188 533 + . . scaffold499 WUBlastX LINE_Penelope 3520 4089 36 - . . scaffold499 WUBlastX LINE_Penelope 3610 4089 43 - . . scaffold499 WUBlastX DNA_IS4EU 4944 5360 101 - . . scaffold499 GLEAN promoter 9222 10221 0.999999 + . ID=CGI_10015759; scaffold499 GLEAN mRNA 10222 10443 0.999999 + . ID=CGI_10015759; scaffold499 WUBlastX LINE_L2 12843 13022 24 - . . scaffold499 WUBlastX LINE_L2 12938 13330 44 - . . scaffold499 WUBlastX LINE_L2 13046 13327 95 - . . scaffold499 WUBlastX LINE_L2 13088 13372 58 - . . scaffold499 WUBlastX LINE_L2 13091 13327 118 - . . scaffold499 TRF Tandem_Repeat 19254 19300 67 + . . scaffold499 GLEAN promoter 21718 22717 1 + . ID=CGI_10015760; scaffold499 GLEAN mRNA 22718 44589 1 + . ID=CGI_10015760; scaffold499 WUBlastX LTR_Ngaro 25568 25816 85 + . . scaffold499 WUBlastX LTR_Ngaro 25613 25813 109 + . . scaffold499 WUBlastX LTR_Ngaro 25831 26064 144 + . . scaffold499 GLEAN promoter 43671 44670 0.695159 + . ID=CGI_10015761; scaffold499 GLEAN mRNA 44671 68810 0.695159 + . ID=CGI_10015761; scaffold499 TRF Tandem_Repeat 52160 52364 347 + . . scaffold499 TRF Tandem_Repeat 59373 61622 2473 + . . scaffold499 WUBlastX LINE_L1-Tx1 71855 73297 922 + . . scaffold499 WUBlastX LINE_L1-Tx1 73243 74844 321 + . . scaffold499 GLEAN promoter 76246 77245 0.926492 + . ID=CGI_10015762; scaffold499 TRF Tandem_Repeat 77083 77118 72 + . . scaffold499 GLEAN mRNA 77246 78226 0.926492 + . ID=CGI_10015762; scaffold499 TRF Tandem_Repeat 83531 83563 66 + . . scaffold499 TRF Tandem_Repeat 83668 83727 120 + . . scaffold499 WUBlastX LINE_RTE-X 86736 87104 40 + . . scaffold499 WUBlastX LINE_RTE-X 86811 87827 221 + . . scaffold499 GLEAN promoter 87831 88830 0.615404 + . ID=CGI_10015763; scaffold499 TRF Tandem_Repeat 88583 88641 118 + . . scaffold499 GLEAN mRNA 88831 107103 0.615404 + . ID=CGI_10015763; scaffold499 TRF Tandem_Repeat 94541 94607 134 + . . scaffold499 WUBlastX LINE_Proto2 101065 101967 82 - . . scaffold499 WUBlastX LINE_L2-Hydra 101065 102165 26 - . . scaffold499 GLEAN promoter 106207 107206 0.571614 + . ID=CGI_10015764; scaffold499 GLEAN mRNA 107207 132247 0.571614 + . ID=CGI_10015764; scaffold499 TRF Tandem_Repeat 111477 111516 62 + . . scaffold499 TRF Tandem_Repeat 114306 114339 59 + . . scaffold499 TRF Tandem_Repeat 124577 124838 317 + . . scaffold499 TRF Tandem_Repeat 124864 124905 84 + . . scaffold499 TRF Tandem_Repeat 126131 126415 322 + . . scaffold499 TRF Tandem_Repeat 126131 126414 360 + . . scaffold499 TRF Tandem_Repeat 133530 133573 88 + . . scaffold499 GLEAN promoter 143759 144758 0.910936 + . ID=CGI_10015765; scaffold499 GLEAN mRNA 144759 154469 0.910936 + . ID=CGI_10015765; scaffold499 TRF Tandem_Repeat 145367 145424 109 + . . scaffold499 TRF Tandem_Repeat 146068 146113 83 + . . scaffold499 TRF Tandem_Repeat 153696 153733 76 + . . scaffold499 TRF Tandem_Repeat 154645 154709 123 + . . scaffold499 TRF Tandem_Repeat 159022 159052 55 + . . scaffold499 TRF Tandem_Repeat 172513 172778 424 + . . scaffold499 TRF Tandem_Repeat 172525 172778 472 + . . scaffold499 TRF Tandem_Repeat 177348 177380 66 + . . scaffold499 WUBlastX LINE_L1-Tx1 182688 183872 34 + . . scaffold499 WUBlastX LINE_L1-Tx1 182862 183854 189 + . . scaffold499 TRF Tandem_Repeat 192624 192673 66 + . . scaffold499 TRF Tandem_Repeat 193056 193091 72 + . . scaffold499 TRF Tandem_Repeat 194534 194587 90 + . . scaffold499 WUBlastX LINE_CR1 195783 195875 42 - . . scaffold499 WUBlastX LTR_Ngaro 196750 197037 72 + . . scaffold499 WUBlastX LINE_L2 197155 197229 34 - . . scaffold499 WUBlastX LTR_Ngaro 198011 198388 58 + . . scaffold499 WUBlastX LTR_Ngaro 198104 198391 72 + . . scaffold499 TRF Tandem_Repeat 199912 200021 103 + . . scaffold499 WUBlastX LTR_Ngaro 200079 200813 342 + . . scaffold499 WUBlastX LINE_RTE-BovB 200875 201045 43 - . . scaffold499 WUBlastX LINE_RTE-BovB 200906 202093 465 - . . scaffold499 WUBlastX LINE_RTE-BovB 201761 202171 152 - . . scaffold499 GLEAN mRNA 223184 235308 0.79164 - . ID=CGI_10015766; scaffold499 TRF Tandem_Repeat 224007 224037 53 + . . scaffold499 TRF Tandem_Repeat 224031 224064 59 + . . scaffold499 GLEAN promoter 235309 236308 0.79164 - . ID=CGI_10015766; scaffold499 WUBlastX DNA_Crypton 244174 244263 55 + . . scaffold499 WUBlastX DNA_Crypton 244284 244469 78 + . . scaffold499 WUBlastX DNA_Crypton 244472 244504 21 + . . scaffold499 WUBlastX LTR_Ngaro 245572 246000 143 + . . scaffold499 WUBlastX LTR_Ngaro 246290 247744 711 + . . scaffold499 WUBlastX LTR_Ngaro 246530 247774 846 + . . scaffold499 WUBlastX LTR_Ngaro 247756 247884 80 + . . scaffold499 WUBlastX LTR_Ngaro 247756 247911 68 + . . scaffold499 GLEAN mRNA 249813 257188 0.581333 - . ID=CGI_10015767; scaffold499 WUBlastX LTR_DIRS 250189 251064 89 + . . scaffold499 WUBlastX LTR_DIRS 250489 251067 90 + . . scaffold499 WUBlastX LTR_DIRS 250678 251067 93 + . . scaffold499 WUBlastX LTR_Gypsy 251150 251269 23 + . . scaffold499 WUBlastX LTR_DIRS 251259 251483 48 + . . scaffold499 WUBlastX LTR_Gypsy 251392 252036 80 + . . scaffold499 WUBlastX LTR_DIRS 251494 252399 608 + . . scaffold499 WUBlastX LTR_DIRS 252393 253277 513 + . . scaffold499 WUBlastX LTR_DIRS 253142 253309 81 + . . scaffold499 GLEAN promoter 257189 258188 0.581333 - . ID=CGI_10015767; scaffold499 GLEAN mRNA 266582 268601 0.999376 - . ID=CGI_10015768; scaffold499 GLEAN promoter 268602 269601 0.999376 - . ID=CGI_10015768; scaffold499 GLEAN promoter 271923 272922 0.733495 + . ID=CGI_10015770; scaffold499 GLEAN mRNA 272003 300500 0.695514 - . ID=CGI_10015769; scaffold499 GLEAN mRNA 272923 273150 0.733495 + . ID=CGI_10015770; scaffold499 TRF Tandem_Repeat 277441 277497 107 + . . scaffold499 TRF Tandem_Repeat 290616 290706 103 + . . scaffold499 TRF Tandem_Repeat 290945 290991 76 + . . scaffold499 TRF Tandem_Repeat 291074 291098 50 + . . scaffold499 TRF Tandem_Repeat 291857 291885 58 + . . scaffold499 TRF Tandem_Repeat 291965 292003 78 + . . scaffold499 TRF Tandem_Repeat 292238 292357 118 + . . scaffold499 GLEAN promoter 300501 301500 0.695514 - . ID=CGI_10015769; scaffold499 GLEAN mRNA 308096 310685 0.777738 - . ID=CGI_10015771; scaffold499 GLEAN promoter 310686 311685 0.777738 - . ID=CGI_10015771; scaffold499 GLEAN mRNA 312675 313115 0.999372 - . ID=CGI_10015772; scaffold499 GLEAN promoter 313116 314115 0.999372 - . ID=CGI_10015772; scaffold499 TRF Tandem_Repeat 325678 325727 66 + . . scaffold499 GLEAN mRNA 348852 357858 0.998349 - . ID=CGI_10015773; scaffold499 TRF Tandem_Repeat 350863 351253 437 + . . scaffold499 TRF Tandem_Repeat 352354 352383 60 + . . scaffold499 GLEAN promoter 357859 358858 0.998349 - . ID=CGI_10015773; scaffold499 GLEAN mRNA 362994 377463 0.942435 - . ID=CGI_10015774; scaffold499 TRF Tandem_Repeat 374660 374709 84 + . . scaffold499 GLEAN promoter 377464 378463 0.942435 - . ID=CGI_10015774; scaffold499 TRF Tandem_Repeat 382539 382621 157 + . . scaffold499 GLEAN promoter 383259 384258 1 + . ID=CGI_10015775; scaffold499 GLEAN mRNA 384259 384897 1 + . ID=CGI_10015775; scaffold499 TRF Tandem_Repeat 390989 391035 94 + . . scaffold499 GLEAN promoter 390992 391991 0.990769 + . ID=CGI_10015776; scaffold499 GLEAN mRNA 391992 398713 0.990769 + . ID=CGI_10015776; scaffold499 GLEAN promoter 400634 401633 1 + . ID=CGI_10015777; scaffold499 GLEAN mRNA 401634 412912 1 + . ID=CGI_10015777; scaffold499 GLEAN mRNA 413653 421633 0.646963 - . ID=CGI_10015778; scaffold499 TRF Tandem_Repeat 418968 419013 83 + . . scaffold499 GLEAN promoter 421634 422633 0.646963 - . ID=CGI_10015778; scaffold499 TRF Tandem_Repeat 426169 426208 80 + . . scaffold499 TRF Tandem_Repeat 432745 432779 70 + . . scaffold5 WUBlastX DNA_TcMar-ISRm1 6175 6543 61 - . . scaffold5 WUBlastX DNA_TcMar-ISRm1 6283 6462 66 - . . scaffold5 WUBlastX LINE_R2 11115 11177 20 - . . scaffold5 WUBlastX LINE_L2 12080 12406 40 - . . scaffold5 WUBlastX LINE_CR1-L2 12411 12710 92 - . . scaffold5 WUBlastX LINE_CR1-L2 12728 13561 302 - . . scaffold5 WUBlastX LINE_CR1 12731 13708 95 - . . scaffold5 WUBlastX LINE_Jockey 13664 13795 28 - . . scaffold5 WUBlastX DNA_Harbinger 40802 40966 57 + . . scaffold5 GLEAN promoter 42954 43953 0.676364 + . ID=CGI_10012924; scaffold5 GLEAN mRNA 43954 49424 0.676364 + . ID=CGI_10012924; scaffold5 TRF Tandem_Repeat 45244 45286 86 + . . scaffold5 GLEAN mRNA 46548 64040 0.730165 - . ID=CGI_10012925; scaffold5 WUBlastX LTR_DIRS 47579 48385 443 + . . scaffold5 WUBlastX LTR_DIRS 48399 49421 834 + . . scaffold5 TRF Tandem_Repeat 50970 51717 656 + . . scaffold5 TRF Tandem_Repeat 58069 58096 56 + . . scaffold5 WUBlastX LINE_RTE-X 62418 62666 84 + . . scaffold5 GLEAN promoter 64041 65040 0.730165 - . ID=CGI_10012925; scaffold5 TRF Tandem_Repeat 72425 72468 79 + . . scaffold5 GLEAN promoter 73774 74773 0.897941 + . ID=CGI_10012926; scaffold5 GLEAN mRNA 74774 91233 0.897941 + . ID=CGI_10012926; scaffold5 WUBlastX DNA_TcMar-Marin 95876 96016 45 + . . scaffold5 WUBlastX DNA_TcMar-Marin 96103 96210 42 + . . scaffold5 TRF Tandem_Repeat 111221 111274 108 + . . scaffold5 TRF Tandem_Repeat 112376 112421 92 + . . scaffold5 TRF Tandem_Repeat 115576 115602 54 + . . scaffold5 TRF Tandem_Repeat 115928 115985 116 + . . scaffold5 TRF Tandem_Repeat 120451 120501 102 + . . scaffold5 GLEAN mRNA 124041 133817 0.505401 - . ID=CGI_10012928; scaffold5 GLEAN promoter 133818 134817 0.505401 - . ID=CGI_10012928; scaffold5 WUBlastX LTR_DIRS 161830 162807 429 - . . scaffold5 WUBlastX LTR_DIRS 163351 165189 945 - . . scaffold5 WUBlastX LTR_Gypsy 164494 165471 110 - . . scaffold5 WUBlastX LTR_DIRS 165392 166078 134 - . . scaffold5 GLEAN mRNA 168265 168939 0.998274 - . ID=CGI_10012929; scaffold5 GLEAN promoter 168940 169939 0.998274 - . ID=CGI_10012929; scaffold5 TRF Tandem_Repeat 186981 187030 100 + . . scaffold5 TRF Tandem_Repeat 187288 187334 94 + . . scaffold5 TRF Tandem_Repeat 198134 198199 132 + . . scaffold5 WUBlastX LTR_DIRS 203046 203546 273 + . . scaffold5 WUBlastX LTR_DIRS 204977 205411 258 + . . scaffold5 WUBlastX LTR_DIRS 205534 205608 30 + . . scaffold5 TRF Tandem_Repeat 229890 229996 142 + . . scaffold5 GLEAN promoter 240543 241542 0.911399 + . ID=CGI_10012930; scaffold5 GLEAN mRNA 241543 248968 0.911399 + . ID=CGI_10012930; scaffold5 TRF Tandem_Repeat 246759 246811 72 + . . scaffold5 GLEAN promoter 251390 252389 1 + . ID=CGI_10012931; scaffold5 GLEAN mRNA 252390 257542 1 + . ID=CGI_10012931; scaffold5 TRF Tandem_Repeat 252490 252527 76 + . . scaffold5 TRF Tandem_Repeat 255077 255776 616 + . . scaffold5 GLEAN mRNA 271613 271948 0.999999 - . ID=CGI_10012932; scaffold5 WUBlastX DNA_MuDR 271625 271906 55 - . . scaffold5 GLEAN promoter 271949 272948 0.999999 - . ID=CGI_10012932; scaffold5 GLEAN promoter 274941 275940 0.946869 + . ID=CGI_10012933; scaffold5 GLEAN mRNA 275941 278134 0.946869 + . ID=CGI_10012933; scaffold5 GLEAN promoter 277401 278400 0.833334 + . ID=CGI_10012934; scaffold5 GLEAN mRNA 278401 287924 0.833334 + . ID=CGI_10012934; scaffold5 TRF Tandem_Repeat 278628 278681 74 + . . scaffold5 TRF Tandem_Repeat 311431 311486 103 + . . scaffold5 GLEAN promoter 314808 315807 1 + . ID=CGI_10012935; scaffold5 WUBlastX LINE_CR1 315036 315761 237 + . . scaffold5 GLEAN mRNA 315808 316296 1 + . ID=CGI_10012935; scaffold5 WUBlastX LINE_L1-Tx1 316358 316633 137 + . . scaffold5 WUBlastX LINE_L1 317383 317502 26 + . . scaffold5 WUBlastX LINE_Penelope 318518 318877 63 - . . scaffold5 WUBlastX LINE_Penelope 318632 318859 81 - . . scaffold5 GLEAN mRNA 319253 338063 0.999673 - . ID=CGI_10012936; scaffold5 TRF Tandem_Repeat 324780 324849 104 + . . scaffold5 TRF Tandem_Repeat 324783 324857 89 + . . scaffold5 GLEAN promoter 338064 339063 0.999673 - . ID=CGI_10012936; scaffold50 TRF Tandem_Repeat 11422 11487 78 + . . scaffold50 GLEAN promoter 14356 15355 0.744604 + . ID=CGI_10009091; scaffold50 GLEAN mRNA 15356 24315 0.744604 + . ID=CGI_10009091; scaffold50 TRF Tandem_Repeat 21739 21862 122 + . . scaffold50 GLEAN promoter 48224 49223 0.979746 + . ID=CGI_10009092; scaffold50 TRF Tandem_Repeat 48646 48690 90 + . . scaffold50 GLEAN mRNA 49224 71899 0.979746 + . ID=CGI_10009092; scaffold50 TRF Tandem_Repeat 50833 50916 145 + . . scaffold50 GLEAN promoter 75221 76220 0.999281 + . ID=CGI_10009093; scaffold50 GLEAN mRNA 76221 84076 0.999281 + . ID=CGI_10009093; scaffold50 TRF Tandem_Repeat 78641 78697 107 + . . scaffold50 TRF Tandem_Repeat 81125 81157 57 + . . scaffold50 GLEAN mRNA 87895 89407 1 - . ID=CGI_10009094; scaffold50 TRF Tandem_Repeat 88708 88754 76 + . . scaffold50 GLEAN promoter 89408 90407 1 - . ID=CGI_10009094; scaffold50 WUBlastX LINE_RTE-BovB 91289 91372 21 + . . scaffold50 WUBlastX LINE_RTE-BovB 91378 91791 60 + . . scaffold50 GLEAN mRNA 93122 94645 1 - . ID=CGI_10009096; scaffold50 TRF Tandem_Repeat 93817 93854 76 + . . scaffold50 GLEAN promoter 94646 95645 1 - . ID=CGI_10009096; scaffold50 TRF Tandem_Repeat 108134 108184 61 + . . scaffold50 GLEAN mRNA 114566 117343 0.999994 - . ID=CGI_10009097; scaffold50 GLEAN promoter 117344 118343 0.999994 - . ID=CGI_10009097; scaffold50 TRF Tandem_Repeat 126388 126413 52 + . . scaffold50 TRF Tandem_Repeat 131982 132128 147 + . . scaffold50 TRF Tandem_Repeat 132226 132342 121 + . . scaffold50 WUBlastX DNA_TcMar-Tc1 142640 142987 45 + . . scaffold50 WUBlastX DNA_TcMar-Tc1 143005 143247 65 + . . scaffold50 WUBlastX DNA_TcMar-Tc1 176400 176504 26 + . . scaffold50 WUBlastX DNA_TcMar-Tc1 176448 177155 315 + . . scaffold50 WUBlastX DNA_TcMar-Tc1 177157 177417 181 + . . scaffold50 WUBlastX DNA_hAT-Blackja 179828 180385 109 - . . scaffold50 WUBlastX DNA_IS4EU 196009 196347 212 - . . scaffold50 WUBlastX DNA_IS4EU 196012 196425 100 - . . scaffold50 GLEAN mRNA 196612 199520 1 - . ID=CGI_10009098; scaffold50 GLEAN promoter 199521 200520 1 - . ID=CGI_10009098; scaffold50 TRF Tandem_Repeat 200781 200823 68 + . . scaffold50 GLEAN promoter 222495 223494 1 + . ID=CGI_10009099; scaffold50 GLEAN mRNA 223495 223800 1 + . ID=CGI_10009099; scaffold50 TRF Tandem_Repeat 224623 224733 87 + . . scaffold50 TRF Tandem_Repeat 224625 224721 104 + . . scaffold50 TRF Tandem_Repeat 224859 224929 94 + . . scaffold50 TRF Tandem_Repeat 224859 224945 79 + . . scaffold50 TRF Tandem_Repeat 224859 224969 61 + . . scaffold50 TRF Tandem_Repeat 225188 225233 92 + . . scaffold500 GLEAN promoter 1000 1999 1 + . ID=CGI_10008711; scaffold500 GLEAN mRNA 2000 3834 1 + . ID=CGI_10008711; scaffold500 TRF Tandem_Repeat 5554 5604 102 + . . scaffold500 WUBlastX LTR_Ngaro 13019 13189 61 + . . scaffold500 WUBlastX LTR_Ngaro 13064 13186 64 + . . scaffold500 WUBlastX LTR_Ngaro 13509 14048 112 + . . scaffold500 GLEAN mRNA 29128 36496 0.827578 - . ID=CGI_10008712; scaffold500 TRF Tandem_Repeat 29872 30228 210 + . . scaffold500 TRF Tandem_Repeat 30854 31051 351 + . . scaffold500 GLEAN promoter 36497 37496 0.827578 - . ID=CGI_10008712; scaffold500 WUBlastX LINE_CR1 37977 38549 85 - . . scaffold500 WUBlastX LINE_CR1 38097 38609 361 - . . scaffold500 WUBlastX LINE_CR1 38103 38759 272 - . . scaffold500 WUBlastX LINE_CR1 38605 38967 152 - . . scaffold500 WUBlastX LINE_CR1 38970 39833 385 - . . scaffold500 WUBlastX LINE_CR1 38970 39698 554 - . . scaffold500 WUBlastX LINE_CR1 40562 40645 20 - . . scaffold500 WUBlastX LINE_L2 41751 42008 35 + . . scaffold500 GLEAN promoter 41769 42768 0.999597 + . ID=CGI_10008713; scaffold500 TRF Tandem_Repeat 42080 42221 137 + . . scaffold500 TRF Tandem_Repeat 42080 42199 170 + . . scaffold500 GLEAN mRNA 42769 50523 0.999597 + . ID=CGI_10008713; scaffold500 TRF Tandem_Repeat 44788 44819 55 + . . scaffold500 GLEAN mRNA 54857 64072 1 - . ID=CGI_10008714; scaffold500 GLEAN promoter 64073 65072 1 - . ID=CGI_10008714; scaffold500 WUBlastX LINE_RTE-X 65727 66266 63 - . . scaffold500 WUBlastX LINE_RTE-X 65853 66374 121 - . . scaffold500 WUBlastX LINE_RTE-X 68070 68366 33 + . . scaffold500 WUBlastX LINE_RTE-BovB 68193 68366 182 + . . scaffold500 WUBlastX LINE_RTE-BovB 68193 68429 159 + . . scaffold500 WUBlastX LINE_RTE-BovB 68386 69117 153 + . . scaffold500 WUBlastX LINE_RTE-BovB 68618 68989 250 + . . scaffold500 GLEAN promoter 70527 71526 0.999013 + . ID=CGI_10008715; scaffold500 GLEAN mRNA 71527 81080 0.999013 + . ID=CGI_10008715; scaffold500 TRF Tandem_Repeat 77849 78039 142 + . . scaffold500 TRF Tandem_Repeat 83967 84019 106 + . . scaffold500 GLEAN promoter 86364 87363 0.999597 + . ID=CGI_10008716; scaffold500 GLEAN mRNA 87364 97102 0.999597 + . ID=CGI_10008716; scaffold500 WUBlastX LINE_CR1 99598 99894 49 + . . scaffold500 WUBlastX LINE_L1 100692 101360 138 + . . scaffold500 WUBlastX LINE_L1-Tx1 100704 101180 213 + . . scaffold500 GLEAN promoter 102965 103964 0.990448 + . ID=CGI_10008717; scaffold500 GLEAN mRNA 103965 138305 0.990448 + . ID=CGI_10008717; scaffold500 GLEAN mRNA 148066 158467 0.9993 - . ID=CGI_10008718; scaffold500 TRF Tandem_Repeat 155086 155160 123 + . . scaffold500 GLEAN promoter 158468 159467 0.9993 - . ID=CGI_10008718; scaffold500 TRF Tandem_Repeat 162310 162343 68 + . . scaffold500 GLEAN mRNA 172116 177355 0.934948 - . ID=CGI_10008719; scaffold500 GLEAN promoter 177356 178355 0.934948 - . ID=CGI_10008719; scaffold500 GLEAN mRNA 178692 180014 0.66107 - . ID=CGI_10008720; scaffold500 GLEAN promoter 180015 181014 0.66107 - . ID=CGI_10008720; scaffold500 TRF Tandem_Repeat 184314 184787 492 + . . scaffold500 TRF Tandem_Repeat 184314 184787 489 + . . scaffold500 TRF Tandem_Repeat 184314 184779 491 + . . scaffold500 TRF Tandem_Repeat 184335 184778 615 + . . scaffold500 GLEAN mRNA 195520 196431 0.84036 - . ID=CGI_10008721; scaffold500 GLEAN promoter 196432 197431 0.84036 - . ID=CGI_10008721; scaffold500 TRF Tandem_Repeat 197240 197285 92 + . . scaffold500 GLEAN mRNA 204513 216123 0.999989 - . ID=CGI_10008722; scaffold500 TRF Tandem_Repeat 214751 214806 105 + . . scaffold500 GLEAN promoter 216124 216275 0.999989 - . ID=CGI_10008722; scaffold501 TRF Tandem_Repeat 4739 4800 124 + . . scaffold501 WUBlastX LTR_Gypsy 16668 17201 161 + . . scaffold501 WUBlastX LTR_Gypsy-Cigr 16668 17330 125 + . . scaffold501 WUBlastX LTR_Gypsy 17342 17596 60 + . . scaffold501 WUBlastX LTR_Gypsy 18020 18313 22 + . . scaffold501 WUBlastX LTR_Gypsy 18137 18196 26 + . . scaffold501 TRF Tandem_Repeat 18945 19407 398 + . . scaffold501 TRF Tandem_Repeat 18949 19399 347 + . . scaffold501 GLEAN promoter 45078 46077 0.999642 + . ID=CGI_10027495; scaffold501 GLEAN mRNA 46078 47745 0.999642 + . ID=CGI_10027495; scaffold501 TRF Tandem_Repeat 51191 51236 74 + . . scaffold501 TRF Tandem_Repeat 54753 54802 100 + . . scaffold501 TRF Tandem_Repeat 64475 64512 76 + . . scaffold501 TRF Tandem_Repeat 66853 66893 64 + . . scaffold501 WUBlastX LTR_Gypsy 69993 71330 73 + . . scaffold501 WUBlastX LTR_Gypsy 70281 71009 168 + . . scaffold501 WUBlastX LTR_Gypsy 70299 71312 98 + . . scaffold501 WUBlastX LTR_Gypsy-Cigr 71333 71980 105 + . . scaffold501 WUBlastX LTR_Gypsy 71964 74027 1523 + . . scaffold501 WUBlastX LTR_ERV1 73848 74141 23 + . . scaffold501 WUBlastX LTR_Gypsy 74089 74154 27 + . . scaffold501 WUBlastX LTR_Gypsy-Cigr 74213 74680 78 + . . scaffold501 WUBlastX LTR_Gypsy 74672 74737 25 + . . scaffold501 GLEAN promoter 81223 82222 0.999571 + . ID=CGI_10027496; scaffold501 GLEAN mRNA 82223 83920 0.999571 + . ID=CGI_10027496; scaffold501 GLEAN promoter 85810 86809 0.733495 + . ID=CGI_10027497; scaffold501 GLEAN mRNA 86810 87079 0.733495 + . ID=CGI_10027497; scaffold501 WUBlastX LTR_Ngaro 89551 90108 126 + . . scaffold501 WUBlastX LTR_Ngaro 90263 90955 207 + . . scaffold501 WUBlastX LTR_Ngaro 90539 90949 271 + . . scaffold501 WUBlastX LTR_Ngaro 90959 91063 71 + . . scaffold501 WUBlastX LTR_Ngaro 91056 91784 516 + . . scaffold501 WUBlastX LTR_Ngaro 91736 92287 59 + . . scaffold501 WUBlastX LTR_Ngaro 92412 92546 104 + . . scaffold501 WUBlastX LTR_Ngaro 92433 92585 101 + . . scaffold501 TRF Tandem_Repeat 95197 95232 58 + . . scaffold501 GLEAN mRNA 102796 108185 0.998497 - . ID=CGI_10027498; scaffold501 GLEAN promoter 108186 109185 0.998497 - . ID=CGI_10027498; scaffold501 GLEAN mRNA 112276 115718 1 - . ID=CGI_10027499; scaffold501 TRF Tandem_Repeat 114027 114060 68 + . . scaffold501 GLEAN promoter 115719 116718 1 - . ID=CGI_10027499; scaffold501 GLEAN mRNA 120151 144291 1 - . ID=CGI_10027500; scaffold501 GLEAN promoter 144292 145291 1 - . ID=CGI_10027500; scaffold501 GLEAN promoter 147261 148260 0.992407 + . ID=CGI_10027501; scaffold501 TRF Tandem_Repeat 147800 147852 106 + . . scaffold501 GLEAN mRNA 148261 155765 0.992407 + . ID=CGI_10027501; scaffold501 TRF Tandem_Repeat 151286 151338 106 + . . scaffold501 GLEAN mRNA 159121 185490 0.79399 - . ID=CGI_10027502; scaffold501 WUBlastX LTR_Gypsy 169921 170355 21 - . . scaffold501 GLEAN promoter 185491 186490 0.79399 - . ID=CGI_10027502; scaffold501 GLEAN mRNA 200379 203978 1 - . ID=CGI_10027503; scaffold501 GLEAN promoter 203979 204978 1 - . ID=CGI_10027503; scaffold501 GLEAN promoter 204073 205072 0.999018 + . ID=CGI_10027504; scaffold501 GLEAN mRNA 205073 226050 0.999018 + . ID=CGI_10027504; scaffold501 GLEAN mRNA 214207 219869 0.999999 - . ID=CGI_10027505; scaffold501 GLEAN promoter 219870 220869 0.999999 - . ID=CGI_10027505; scaffold501 TRF Tandem_Repeat 226104 226159 112 + . . scaffold501 GLEAN promoter 230313 231312 0.686532 + . ID=CGI_10027506; scaffold501 TRF Tandem_Repeat 231019 231057 69 + . . scaffold501 GLEAN mRNA 231313 232215 0.686532 + . ID=CGI_10027506; scaffold501 TRF Tandem_Repeat 234035 234083 98 + . . scaffold501 GLEAN promoter 237343 238342 0.858384 + . ID=CGI_10027507; scaffold501 GLEAN mRNA 238343 239866 0.858384 + . ID=CGI_10027507; scaffold501 GLEAN promoter 241346 242345 0.921176 + . ID=CGI_10027508; scaffold501 GLEAN mRNA 242346 242585 0.921176 + . ID=CGI_10027508; scaffold501 GLEAN promoter 255113 256112 0.800961 + . ID=CGI_10027510; scaffold501 GLEAN mRNA 256113 267092 0.800961 + . ID=CGI_10027510; scaffold501 TRF Tandem_Repeat 258200 258250 57 + . . scaffold501 TRF Tandem_Repeat 265017 265041 50 + . . scaffold501 GLEAN promoter 266968 267967 0.999995 + . ID=CGI_10027511; scaffold501 WUBlastX LINE_L1 267398 268228 24 + . . scaffold501 WUBlastX LINE_L1-Tx1 267425 268126 73 + . . scaffold501 WUBlastX LINE_L2 267560 268126 87 + . . scaffold501 GLEAN mRNA 267968 268585 0.999995 + . ID=CGI_10027511; scaffold501 WUBlastX LINE_CR1 269024 269110 29 + . . scaffold501 WUBlastX LINE_L1 269567 270172 187 + . . scaffold501 WUBlastX LINE_L1-Tx1 269690 270184 455 + . . scaffold501 WUBlastX LINE_L1-Tx1 270183 272039 724 + . . scaffold501 GLEAN promoter 280345 281344 0.998749 + . ID=CGI_10027512; scaffold501 GLEAN mRNA 281345 281878 0.998749 + . ID=CGI_10027512; scaffold501 GLEAN promoter 288989 289988 0.535742 + . ID=CGI_10027513; scaffold501 GLEAN mRNA 289989 292004 0.535742 + . ID=CGI_10027513; scaffold501 GLEAN mRNA 303640 310730 1 - . ID=CGI_10027514; scaffold501 GLEAN promoter 310216 311215 1 + . ID=CGI_10027515; scaffold501 GLEAN promoter 310731 311730 1 - . ID=CGI_10027514; scaffold501 GLEAN mRNA 311216 316419 1 + . ID=CGI_10027515; scaffold501 GLEAN promoter 318045 319044 0.997884 + . ID=CGI_10027516; scaffold501 GLEAN mRNA 319045 329313 0.997884 + . ID=CGI_10027516; scaffold501 GLEAN mRNA 326256 352772 0.862893 - . ID=CGI_10027517; scaffold501 GLEAN promoter 352773 353772 0.862893 - . ID=CGI_10027517; scaffold501 GLEAN mRNA 353218 361904 0.99792 - . ID=CGI_10027518; scaffold501 GLEAN promoter 361905 362904 0.99792 - . ID=CGI_10027518; scaffold501 TRF Tandem_Repeat 364889 364938 100 + . . scaffold501 TRF Tandem_Repeat 366435 366474 80 + . . scaffold501 TRF Tandem_Repeat 366604 366629 52 + . . scaffold501 TRF Tandem_Repeat 372800 372834 70 + . . scaffold501 GLEAN mRNA 377400 385484 0.99992 - . ID=CGI_10027519; scaffold501 TRF Tandem_Repeat 381630 381668 78 + . . scaffold501 GLEAN promoter 385485 386484 0.99992 - . ID=CGI_10027519; scaffold501 GLEAN promoter 396153 397152 1 + . ID=CGI_10027520; scaffold501 GLEAN mRNA 397153 400726 1 + . ID=CGI_10027520; scaffold501 GLEAN mRNA 401325 439381 0.888354 - . ID=CGI_10027521; scaffold501 TRF Tandem_Repeat 411725 411790 125 + . . scaffold501 TRF Tandem_Repeat 415259 415317 118 + . . scaffold501 TRF Tandem_Repeat 427830 427858 51 + . . scaffold501 GLEAN promoter 439382 440381 0.888354 - . ID=CGI_10027521; scaffold501 TRF Tandem_Repeat 458143 458211 59 + . . scaffold501 TRF Tandem_Repeat 458143 458198 51 + . . scaffold501 TRF Tandem_Repeat 458143 458211 57 + . . scaffold501 TRF Tandem_Repeat 458145 458203 79 + . . scaffold501 WUBlastX LINE_L2 458762 459271 43 - . . scaffold501 WUBlastX LINE_RTE-X 458855 459286 220 - . . scaffold501 WUBlastX DNA_MuDR 461102 461323 119 + . . scaffold501 TRF Tandem_Repeat 469697 469725 58 + . . scaffold501 TRF Tandem_Repeat 480348 480700 143 + . . scaffold501 TRF Tandem_Repeat 480427 480503 59 + . . scaffold501 TRF Tandem_Repeat 480428 480518 69 + . . scaffold501 TRF Tandem_Repeat 480575 480710 117 + . . scaffold501 TRF Tandem_Repeat 480585 480789 165 + . . scaffold501 TRF Tandem_Repeat 480587 480700 55 + . . scaffold501 TRF Tandem_Repeat 480650 480709 52 + . . scaffold501 TRF Tandem_Repeat 489554 489583 60 + . . scaffold501 TRF Tandem_Repeat 491029 491054 52 + . . scaffold501 GLEAN mRNA 492020 495071 0.995871 - . ID=CGI_10027522; scaffold501 GLEAN promoter 494655 495654 0.911705 + . ID=CGI_10027523; scaffold501 GLEAN promoter 495072 496071 0.995871 - . ID=CGI_10027522; scaffold501 GLEAN mRNA 495655 503804 0.911705 + . ID=CGI_10027523; scaffold501 GLEAN promoter 505068 506067 0.957283 + . ID=CGI_10027524; scaffold501 GLEAN mRNA 506068 506292 0.957283 + . ID=CGI_10027524; scaffold501 TRF Tandem_Repeat 506633 506660 56 + . . scaffold501 GLEAN mRNA 529706 529951 0.999372 - . ID=CGI_10027525; scaffold501 GLEAN promoter 529952 530951 0.999372 - . ID=CGI_10027525; scaffold501 WUBlastX LINE_RTE-X 530926 533037 977 - . . scaffold501 GLEAN mRNA 541499 541882 0.883829 - . ID=CGI_10027526; scaffold501 GLEAN promoter 541883 542882 0.883829 - . ID=CGI_10027526; scaffold501 WUBlastX LTR_Ngaro 559011 559406 165 + . . scaffold501 WUBlastX LTR_Ngaro 559394 559447 22 + . . scaffold501 TRF Tandem_Repeat 566070 566990 1474 + . . scaffold501 TRF Tandem_Repeat 567155 567192 51 + . . scaffold501 GLEAN mRNA 575399 580307 0.882009 - . ID=CGI_10027527; scaffold501 TRF Tandem_Repeat 575934 576013 61 + . . scaffold501 TRF Tandem_Repeat 579220 579473 402 + . . scaffold501 GLEAN promoter 580308 581307 0.882009 - . ID=CGI_10027527; scaffold501 TRF Tandem_Repeat 580786 580819 50 + . . scaffold501 WUBlastX LINE_RTE-X 580926 581732 194 - . . scaffold501 WUBlastX LINE_RTE-X 581687 582835 775 - . . scaffold501 WUBlastX LINE_I 582843 582884 23 - . . scaffold501 WUBlastX LINE_RTE-X 582942 583187 61 - . . scaffold501 WUBlastX LINE_Tad1? 583477 583527 21 - . . scaffold501 TRF Tandem_Repeat 583551 583594 72 + . . scaffold501 WUBlastX LINE_RTE-X 587148 587666 100 - . . scaffold501 WUBlastX LINE_RTE-X 587247 587771 115 - . . scaffold501 WUBlastX LINE_RTE-X 587247 587645 122 - . . scaffold501 WUBlastX LINE_RTE-X 588398 588916 98 - . . scaffold501 WUBlastX LINE_RTE-X 588497 588895 122 - . . scaffold501 WUBlastX LINE_RTE-X 588497 589021 116 - . . scaffold501 WUBlastX LINE_L1-Tx1 589212 589262 20 - . . scaffold501 WUBlastX LINE_RTE-X 589593 589697 49 - . . scaffold501 WUBlastX LINE_RTE-X 589611 590345 418 - . . scaffold501 WUBlastX LINE_RTE-X 590345 590527 61 - . . scaffold501 WUBlastX LINE_I 590348 590611 45 - . . scaffold501 WUBlastX LINE_RTE-X 590366 590461 75 - . . scaffold501 WUBlastX LINE_L2 591290 591733 135 - . . scaffold501 WUBlastX LINE_RTE-X 591359 591748 232 - . . scaffold501 WUBlastX LINE_RTE-RTE 591365 591829 117 - . . scaffold501 WUBlastX LINE_CR1 591368 591943 45 - . . scaffold501 WUBlastX LINE_L2 592318 592404 20 - . . scaffold501 TRF Tandem_Repeat 595690 596219 791 + . . scaffold501 TRF Tandem_Repeat 605630 605658 58 + . . scaffold501 TRF Tandem_Repeat 605769 605829 115 + . . scaffold501 TRF Tandem_Repeat 608972 609080 109 + . . scaffold501 TRF Tandem_Repeat 620637 620715 54 + . . scaffold501 WUBlastX LTR_DIRS 630640 631002 60 + . . scaffold501 WUBlastX LTR_DIRS 630697 631041 85 + . . scaffold501 TRF Tandem_Repeat 631618 631709 103 + . . scaffold501 WUBlastX LTR_DIRS 631734 631880 73 + . . scaffold501 WUBlastX LTR_DIRS 631862 632212 259 + . . scaffold501 WUBlastX LTR_DIRS 632229 632717 239 + . . scaffold501 WUBlastX LTR_DIRS 632675 632938 183 + . . scaffold501 WUBlastX LTR_DIRS 633437 633628 137 + . . scaffold501 WUBlastX LTR_DIRS 633458 633676 25 + . . scaffold501 WUBlastX LTR_DIRS 633678 633920 65 + . . scaffold501 WUBlastX LTR_DIRS 633800 633952 77 + . . scaffold501 WUBlastX LTR_DIRS 633874 634107 107 + . . scaffold501 TRF Tandem_Repeat 634887 635093 252 + . . scaffold501 GLEAN promoter 635535 636534 0.994416 + . ID=CGI_10027528; scaffold501 GLEAN mRNA 636535 662516 0.994416 + . ID=CGI_10027528; scaffold501 TRF Tandem_Repeat 639639 640306 1158 + . . scaffold501 TRF Tandem_Repeat 651700 651769 131 + . . scaffold501 TRF Tandem_Repeat 658380 658431 95 + . . scaffold501 TRF Tandem_Repeat 661684 661742 102 + . . scaffold501 GLEAN mRNA 665383 674534 0.643511 - . ID=CGI_10027529; scaffold501 GLEAN promoter 674535 675534 0.643511 - . ID=CGI_10027529; scaffold501 TRF Tandem_Repeat 678366 678419 108 + . . scaffold501 GLEAN mRNA 690007 761178 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 692296 692353 73 + . . scaffold501 TRF Tandem_Repeat 711137 711942 1207 + . . scaffold501 TRF Tandem_Repeat 712147 712191 72 + . . scaffold501 TRF Tandem_Repeat 721086 721134 98 + . . scaffold501 TRF Tandem_Repeat 722665 722692 56 + . . scaffold501 WUBlastX LTR_Gypsy 724362 724787 47 + . . scaffold501 WUBlastX LTR_Gypsy-Cigr 724428 726179 868 + . . scaffold501 WUBlastX LTR_Gypsy 725199 726368 463 + . . scaffold501 TRF Tandem_Repeat 735874 735916 86 + . . scaffold501 TRF Tandem_Repeat 739754 740713 1423 + . . scaffold501 TRF Tandem_Repeat 740744 740799 76 + . . scaffold501 GLEAN promoter 761179 762178 0.748134 - . ID=CGI_10027530; scaffold501 TRF Tandem_Repeat 761730 761866 91 + . . scaffold501 TRF Tandem_Repeat 761738 762041 349 + . . scaffold501 TRF Tandem_Repeat 761872 762004 76 + . . scaffold501 TRF Tandem_Repeat 762411 762626 138 + . . scaffold501 TRF Tandem_Repeat 762629 762724 174 + . . scaffold501 WUBlastX LINE_RTE-X 763569 763721 80 + . . scaffold501 WUBlastX LINE_RTE-X 763569 764042 71 + . . scaffold501 WUBlastX LINE_RTE-X 764313 764603 30 + . . scaffold501 TRF Tandem_Repeat 774751 774798 51 + . . scaffold501 TRF Tandem_Repeat 774754 774798 72 + . . scaffold501 WUBlastX LINE_RTE-X 774865 775707 236 + . . scaffold501 TRF Tandem_Repeat 775736 775795 57 + . . scaffold501 TRF Tandem_Repeat 776003 776056 67 + . . scaffold501 TRF Tandem_Repeat 776006 776051 67 + . . scaffold501 GLEAN promoter 785323 786322 0.813868 + . ID=CGI_10027531; scaffold501 GLEAN mRNA 786323 819712 0.813868 + . ID=CGI_10027531; scaffold501 WUBlastX LINE_RTE-X 790934 792328 607 - . . scaffold501 WUBlastX LINE_CR1 792179 792391 29 - . . scaffold501 TRF Tandem_Repeat 794846 795074 347 + . . scaffold501 TRF Tandem_Repeat 797886 797981 147 + . . scaffold501 TRF Tandem_Repeat 805452 805611 212 + . . scaffold501 TRF Tandem_Repeat 819965 820012 51 + . . scaffold501 TRF Tandem_Repeat 821782 821823 75 + . . scaffold501 TRF Tandem_Repeat 824785 825102 201 + . . scaffold501 TRF Tandem_Repeat 830689 830763 69 + . . scaffold501 TRF Tandem_Repeat 830689 830763 96 + . . scaffold501 TRF Tandem_Repeat 838598 838629 55 + . . scaffold501 TRF Tandem_Repeat 844011 844178 183 + . . scaffold501 TRF Tandem_Repeat 844011 844178 183 + . . scaffold501 TRF Tandem_Repeat 845666 845729 114 + . . scaffold501 TRF Tandem_Repeat 852134 852164 53 + . . scaffold501 TRF Tandem_Repeat 852163 852209 85 + . . scaffold501 GLEAN promoter 856447 857446 0.999998 + . ID=CGI_10027532; scaffold501 TRF Tandem_Repeat 857034 857125 170 + . . scaffold501 GLEAN mRNA 857447 858835 0.999998 + . ID=CGI_10027532; scaffold501 TRF Tandem_Repeat 860053 861126 1993 + . . scaffold501 TRF Tandem_Repeat 860907 861074 87 + . . scaffold501 GLEAN promoter 861188 862187 0.966154 + . ID=CGI_10027533; scaffold501 GLEAN mRNA 862188 876023 0.966154 + . ID=CGI_10027533; scaffold501 WUBlastX LINE_RTE-X 866251 867348 350 + . . scaffold501 TRF Tandem_Repeat 877966 878101 75 + . . scaffold501 TRF Tandem_Repeat 877966 878095 90 + . . scaffold501 TRF Tandem_Repeat 877966 878094 108 + . . scaffold501 TRF Tandem_Repeat 878115 878174 52 + . . scaffold501 TRF Tandem_Repeat 880210 880275 54 + . . scaffold501 TRF Tandem_Repeat 880214 880275 58 + . . scaffold501 TRF Tandem_Repeat 880282 880394 79 + . . scaffold501 TRF Tandem_Repeat 880291 880394 65 + . . scaffold501 GLEAN promoter 881429 882428 1 + . ID=CGI_10027534; scaffold501 TRF Tandem_Repeat 882072 882117 92 + . . scaffold501 GLEAN mRNA 882429 883828 1 + . ID=CGI_10027534; scaffold501 GLEAN promoter 886349 887348 1 + . ID=CGI_10027535; scaffold501 GLEAN mRNA 887349 890719 1 + . ID=CGI_10027535; scaffold501 TRF Tandem_Repeat 891118 891225 58 + . . scaffold501 GLEAN promoter 896449 897448 0.999676 + . ID=CGI_10027536; scaffold501 GLEAN mRNA 897449 900203 0.999676 + . ID=CGI_10027536; scaffold501 TRF Tandem_Repeat 902570 902778 355 + . . scaffold501 WUBlastX LINE_Penelope 917595 917795 52 - . . scaffold501 WUBlastX LINE_Penelope 917872 918606 100 - . . scaffold501 WUBlastX LTR_Ngaro 926606 926992 100 - . . scaffold501 WUBlastX LTR_Ngaro 926606 926926 110 - . . scaffold501 WUBlastX LTR_Ngaro 927038 927439 259 - . . scaffold501 WUBlastX LTR_Ngaro 927462 927842 123 - . . scaffold501 WUBlastX LTR_Ngaro 927468 927914 122 - . . scaffold501 GLEAN mRNA 928095 928403 0.733495 - . ID=CGI_10027537; scaffold501 WUBlastX LTR_Ngaro 928098 928394 96 - . . scaffold501 GLEAN promoter 928404 929403 0.733495 - . ID=CGI_10027537; scaffold501 TRF Tandem_Repeat 931071 931124 108 + . . scaffold501 WUBlastX LINE_L1-Tx1 931429 934077 1409 - . . scaffold501 TRF Tandem_Repeat 934292 934332 82 + . . scaffold501 WUBlastX LINE_CR1 934973 935062 31 - . . scaffold501 TRF Tandem_Repeat 938142 938217 118 + . . scaffold501 GLEAN promoter 950028 951027 0.593387 + . ID=CGI_10027538; scaffold501 GLEAN mRNA 951028 952185 0.593387 + . ID=CGI_10027538; scaffold501 TRF Tandem_Repeat 953890 953941 104 + . . scaffold501 TRF Tandem_Repeat 953999 954105 214 + . . scaffold501 GLEAN promoter 970125 971124 0.995685 + . ID=CGI_10027539; scaffold501 TRF Tandem_Repeat 970432 970473 66 + . . scaffold501 TRF Tandem_Repeat 970545 970594 91 + . . scaffold501 GLEAN mRNA 971125 985794 0.995685 + . ID=CGI_10027539; scaffold501 TRF Tandem_Repeat 972689 972746 57 + . . scaffold501 TRF Tandem_Repeat 988076 988130 101 + . . scaffold501 TRF Tandem_Repeat 988860 989054 92 + . . scaffold501 TRF Tandem_Repeat 989378 989463 86 + . . scaffold501 TRF Tandem_Repeat 989475 989560 95 + . . scaffold501 TRF Tandem_Repeat 993695 993790 76 + . . scaffold501 TRF Tandem_Repeat 999118 999159 66 + . . scaffold501 TRF Tandem_Repeat 999158 999183 52 + . . scaffold501 TRF Tandem_Repeat 1018257 1018302 83 + . . scaffold501 TRF Tandem_Repeat 1018617 1018665 53 + . . scaffold501 TRF Tandem_Repeat 1020397 1020452 89 + . . scaffold501 TRF Tandem_Repeat 1021359 1021402 88 + . . scaffold501 TRF Tandem_Repeat 1021403 1021451 98 + . . scaffold501 TRF Tandem_Repeat 1023425 1023467 68 + . . scaffold501 TRF Tandem_Repeat 1036852 1036907 112 + . . scaffold501 GLEAN mRNA 1046070 1047158 0.912755 - . ID=CGI_10027540; scaffold501 GLEAN promoter 1047159 1048158 0.912755 - . ID=CGI_10027540; scaffold501 TRF Tandem_Repeat 1047356 1047382 54 + . . scaffold501 WUBlastX LINE_RTE-X 1047544 1048293 66 - . . scaffold501 WUBlastX LINE_RTE-X 1047664 1049442 931 - . . scaffold501 WUBlastX LINE_RTE-X 1054108 1056180 744 - . . scaffold501 GLEAN promoter 1060910 1061909 1 + . ID=CGI_10027541; scaffold501 GLEAN mRNA 1061910 1067553 1 + . ID=CGI_10027541; scaffold501 TRF Tandem_Repeat 1064681 1065092 401 + . . scaffold501 TRF Tandem_Repeat 1064681 1065092 429 + . . scaffold501 TRF Tandem_Repeat 1064690 1065092 425 + . . scaffold501 TRF Tandem_Repeat 1064730 1064948 258 + . . scaffold501 GLEAN promoter 1068485 1069484 0.999593 + . ID=CGI_10027543; scaffold501 GLEAN mRNA 1068987 1092615 0.665349 - . ID=CGI_10027542; scaffold501 GLEAN mRNA 1069485 1078336 0.999593 + . ID=CGI_10027543; scaffold501 GLEAN promoter 1092616 1093615 0.665349 - . ID=CGI_10027542; scaffold501 GLEAN mRNA 1095586 1095825 1 - . ID=CGI_10027544; scaffold501 GLEAN promoter 1095826 1096825 1 - . ID=CGI_10027544; scaffold501 TRF Tandem_Repeat 1097211 1097278 129 + . . scaffold501 WUBlastX LINE_RTE-X 1101737 1101922 25 + . . scaffold501 WUBlastX LINE_Proto2 1102753 1103523 118 + . . scaffold501 TRF Tandem_Repeat 1117640 1117837 256 + . . scaffold501 TRF Tandem_Repeat 1117640 1117838 89 + . . scaffold501 TRF Tandem_Repeat 1123830 1124009 297 + . . scaffold501 GLEAN mRNA 1134633 1191403 0.395005 - . ID=CGI_10027545; scaffold501 WUBlastX LINE_Penelope 1136669 1137073 32 + . . scaffold501 WUBlastX LINE_Penelope 1136747 1137046 38 + . . scaffold501 WUBlastX LINE_Penelope 1137013 1137153 35 + . . scaffold501 TRF Tandem_Repeat 1137767 1137822 76 + . . scaffold501 TRF Tandem_Repeat 1140859 1140891 66 + . . scaffold501 TRF Tandem_Repeat 1165682 1166803 1456 + . . scaffold501 TRF Tandem_Repeat 1172796 1172838 86 + . . scaffold501 TRF Tandem_Repeat 1174967 1175678 940 + . . scaffold501 TRF Tandem_Repeat 1174990 1175678 908 + . . scaffold501 TRF Tandem_Repeat 1185847 1185934 122 + . . scaffold501 GLEAN promoter 1191404 1192403 0.395005 - . ID=CGI_10027545; scaffold501 TRF Tandem_Repeat 1192966 1193090 136 + . . scaffold501 TRF Tandem_Repeat 1192967 1193090 137 + . . scaffold501 TRF Tandem_Repeat 1194866 1194944 149 + . . scaffold501 TRF Tandem_Repeat 1195224 1195265 84 + . . scaffold501 TRF Tandem_Repeat 1198003 1198087 131 + . . scaffold501 GLEAN promoter 1201814 1202813 0.789617 + . ID=CGI_10027546; scaffold501 GLEAN mRNA 1202814 1224035 0.789617 + . ID=CGI_10027546; scaffold501 WUBlastX LINE_L2 1210962 1211111 86 + . . scaffold501 WUBlastX LINE_CR1-L2 1211117 1211278 45 + . . scaffold501 WUBlastX LTR_Gypsy 1230643 1230846 123 - . . scaffold501 WUBlastX LTR_Gypsy 1231049 1231186 43 - . . scaffold501 WUBlastX LTR_Gypsy 1231182 1231298 64 - . . scaffold501 WUBlastX LTR_Gypsy 1231182 1231334 59 - . . scaffold501 TRF Tandem_Repeat 1243676 1243720 54 + . . scaffold501 TRF Tandem_Repeat 1246230 1247183 1453 + . . scaffold501 TRF Tandem_Repeat 1253647 1253698 68 + . . scaffold501 WUBlastX DNA_hAT-Tip100 1259476 1259829 55 + . . scaffold501 WUBlastX DNA_hAT-Tip100 1259602 1259832 128 + . . scaffold501 TRF Tandem_Repeat 1269347 1269371 50 + . . scaffold501 TRF Tandem_Repeat 1269599 1270402 1128 + . . scaffold501 TRF Tandem_Repeat 1270412 1270463 68 + . . scaffold501 WUBlastX LTR_Pao 1272875 1273549 436 - . . scaffold501 WUBlastX LTR_Pao 1273533 1274549 540 - . . scaffold501 WUBlastX LTR_Pao 1274085 1274642 136 - . . scaffold501 TRF Tandem_Repeat 1274851 1274970 206 + . . scaffold501 TRF Tandem_Repeat 1275375 1275415 64 + . . scaffold501 TRF Tandem_Repeat 1275669 1275764 84 + . . scaffold501 GLEAN promoter 1275737 1276736 0.839262 + . ID=CGI_10027547; scaffold501 TRF Tandem_Repeat 1276202 1276231 53 + . . scaffold501 GLEAN mRNA 1276737 1278953 0.839262 + . ID=CGI_10027547; scaffold501 WUBlastX LTR_Ngaro 1284989 1285264 24 + . . scaffold501 WUBlastX LTR_Ngaro 1285198 1285656 110 + . . scaffold501 WUBlastX LTR_Ngaro 1285273 1285620 110 + . . scaffold501 WUBlastX LTR_Ngaro 1285426 1285635 147 + . . scaffold501 WUBlastX LTR_Ngaro 1285626 1285859 49 + . . scaffold501 WUBlastX LTR_Ngaro 1285626 1285763 70 + . . scaffold501 WUBlastX LINE_L2 1285874 1286086 82 - . . scaffold501 WUBlastX LTR_Ngaro 1286055 1286651 368 + . . scaffold501 WUBlastX LTR_Ngaro 1286657 1286713 36 + . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288099 1288698 68 + . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288345 1288719 95 + . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288432 1288770 60 + . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288700 1288906 36 + . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288700 1288864 50 + . . scaffold501 WUBlastX DNA_TcMar-Tc1 1288905 1288949 30 + . . scaffold501 TRF Tandem_Repeat 1291411 1291477 91 + . . scaffold501 TRF Tandem_Repeat 1291411 1291477 73 + . . scaffold501 TRF Tandem_Repeat 1291414 1291465 68 + . . scaffold501 WUBlastX LINE_L1-Tx1 1292405 1294762 328 - . . scaffold501 WUBlastX LINE_L1-Tx1 1293743 1294720 510 - . . scaffold501 WUBlastX LINE_L1 1294789 1294971 46 - . . scaffold501 WUBlastX LINE_L1 1294959 1295078 58 - . . scaffold501 WUBlastX LINE_L1-Tx1 1294959 1295105 22 - . . scaffold501 WUBlastX LINE_L1-Tx1 1295141 1295272 36 - . . scaffold501 GLEAN promoter 1299032 1300031 0.67189 + . ID=CGI_10027548; scaffold501 GLEAN mRNA 1300032 1300397 0.67189 + . ID=CGI_10027548; scaffold501 WUBlastX LTR_Gypsy 1300523 1301125 23 + . . scaffold501 WUBlastX LTR_Gypsy 1300622 1301812 114 + . . scaffold501 WUBlastX LTR_Gypsy 1301165 1302100 200 + . . scaffold501 WUBlastX LTR_Gypsy-Cigr 1302096 1303703 1173 + . . scaffold501 WUBlastX LTR_Gypsy 1303706 1304620 397 + . . scaffold501 WUBlastX LTR_Copia 1304649 1304861 53 + . . scaffold501 GLEAN mRNA 1305168 1305404 1 - . ID=CGI_10027549; scaffold501 GLEAN promoter 1305405 1306404 1 - . ID=CGI_10027549; scaffold501 TRF Tandem_Repeat 1326296 1326320 50 + . . scaffold501 TRF Tandem_Repeat 1327386 1327421 72 + . . scaffold501 TRF Tandem_Repeat 1328278 1328304 54 + . . scaffold501 GLEAN promoter 1330333 1331332 0.550262 + . ID=CGI_10027550; scaffold501 GLEAN mRNA 1331333 1332896 0.550262 + . ID=CGI_10027550; scaffold501 GLEAN promoter 1332130 1333129 0.364422 + . ID=CGI_10027551; scaffold501 GLEAN mRNA 1333130 1334876 0.364422 + . ID=CGI_10027551; scaffold501 WUBlastX LTR_Pao 1339771 1343103 2802 - . . scaffold501 WUBlastX LTR_Pao 1341166 1345104 2289 - . . scaffold501 WUBlastX LTR_Pao 1344787 1345275 46 - . . scaffold501 WUBlastX LTR_Pao 1344829 1345191 54 - . . scaffold501 TRF Tandem_Repeat 1349686 1349742 107 + . . scaffold501 TRF Tandem_Repeat 1351535 1351649 99 + . . scaffold501 TRF Tandem_Repeat 1351535 1351648 87 + . . scaffold501 TRF Tandem_Repeat 1352448 1352476 51 + . . scaffold501 TRF Tandem_Repeat 1355045 1355090 92 + . . scaffold501 TRF Tandem_Repeat 1359363 1359395 66 + . . scaffold501 TRF Tandem_Repeat 1365240 1366016 936 + . . scaffold501 TRF Tandem_Repeat 1382128 1382168 57 + . . scaffold501 TRF Tandem_Repeat 1389941 1389997 114 + . . scaffold501 TRF Tandem_Repeat 1395754 1395802 71 + . . scaffold502 GLEAN promoter 1053 2052 1 + . ID=CGI_10024310; scaffold502 GLEAN mRNA 2053 5565 1 + . ID=CGI_10024310; scaffold502 TRF Tandem_Repeat 4620 5363 754 + . . scaffold502 GLEAN promoter 7220 8219 0.980878 + . ID=CGI_10024311; scaffold502 GLEAN mRNA 8220 27771 0.980878 + . ID=CGI_10024311; scaffold502 TRF Tandem_Repeat 10455 10516 63 + . . scaffold502 TRF Tandem_Repeat 19554 19617 119 + . . scaffold502 TRF Tandem_Repeat 27922 27952 55 + . . scaffold502 TRF Tandem_Repeat 27923 27990 68 + . . scaffold502 TRF Tandem_Repeat 27923 27990 82 + . . scaffold502 TRF Tandem_Repeat 27923 27990 75 + . . scaffold502 TRF Tandem_Repeat 33986 34020 70 + . . scaffold502 TRF Tandem_Repeat 47829 47885 114 + . . scaffold502 GLEAN promoter 50789 51788 0.999351 + . ID=CGI_10024312; scaffold502 GLEAN mRNA 51789 56841 0.999351 + . ID=CGI_10024312; scaffold502 GLEAN promoter 65995 66994 0.642831 + . ID=CGI_10024313; scaffold502 GLEAN mRNA 66995 88059 0.642831 + . ID=CGI_10024313; scaffold502 TRF Tandem_Repeat 69163 69199 56 + . . scaffold502 WUBlastX LINE_L1-Tx1 73534 73836 23 - . . scaffold502 WUBlastX LINE_L1-Tx1 73582 73830 62 - . . scaffold502 WUBlastX LINE_L1-Tx1 73582 73884 31 - . . scaffold502 WUBlastX LINE_L1-Tx1 74373 74756 250 + . . scaffold502 WUBlastX LINE_L1-Tx1 74762 75472 340 + . . scaffold502 WUBlastX LINE_L1 74765 75895 269 + . . scaffold502 WUBlastX LINE_L1-Tx1 75777 76385 320 + . . scaffold502 WUBlastX LINE_L1 75879 76517 228 + . . scaffold502 WUBlastX LINE_L1 76587 76643 23 + . . scaffold502 WUBlastX LINE_L1 77240 78034 29 + . . scaffold502 WUBlastX LINE_L1-Tx1 77315 77977 282 + . . scaffold502 WUBlastX LTR_Ngaro 79229 79708 258 - . . scaffold502 TRF Tandem_Repeat 105337 105503 164 + . . scaffold502 TRF Tandem_Repeat 114686 114718 66 + . . scaffold502 TRF Tandem_Repeat 131825 131863 60 + . . scaffold502 WUBlastX LINE_L1-Tx1 132160 132402 27 - . . scaffold502 WUBlastX LINE_L1-Tx1 132199 132420 44 - . . scaffold502 WUBlastX LINE_L2 139440 139673 41 - . . scaffold502 WUBlastX LINE_CR1-L2 139455 139649 59 - . . scaffold502 WUBlastX LINE_L2 139679 140938 278 - . . scaffold502 WUBlastX LINE_CR1 140985 141176 40 - . . scaffold502 WUBlastX LINE_CR1-L2 142060 142437 40 - . . scaffold502 WUBlastX LINE_CR1-L2 142108 142416 83 - . . scaffold502 WUBlastX LTR_Gypsy 143032 143256 32 + . . scaffold502 TRF Tandem_Repeat 144468 144500 66 + . . scaffold502 WUBlastX LINE_RTE-X 144561 144797 23 - . . scaffold502 WUBlastX LINE_RTE-X 144681 144833 45 - . . scaffold502 WUBlastX LINE_RTE-X 144806 145261 63 - . . scaffold502 WUBlastX LINE_RTE-X 145242 146270 114 - . . scaffold502 WUBlastX LINE_RTE-X 145467 146270 191 - . . scaffold502 WUBlastX LINE_RTE-X 145494 145973 196 - . . scaffold502 WUBlastX LINE_CR1 145698 146384 32 - . . scaffold502 WUBlastX LINE_L2 146514 146546 21 - . . scaffold502 WUBlastX LINE_RTE-X 147060 147425 35 - . . scaffold502 WUBlastX LINE_RTE-X 147739 148152 85 - . . scaffold502 WUBlastX LINE_CR1 147760 148230 41 - . . scaffold502 WUBlastX LINE_L2 148351 148992 117 - . . scaffold502 WUBlastX LINE_L2 148351 148875 143 - . . scaffold502 TRF Tandem_Repeat 156070 156108 51 + . . scaffold502 WUBlastX LTR_Ngaro 157789 158235 87 - . . scaffold502 WUBlastX LTR_Ngaro 157828 158202 127 - . . scaffold502 WUBlastX LTR_Ngaro 157837 158109 130 - . . scaffold502 WUBlastX LTR_Ngaro 158271 158708 154 - . . scaffold502 WUBlastX LTR_Ngaro 158732 159793 413 - . . scaffold502 WUBlastX LTR_Ngaro 158738 159379 419 - . . scaffold502 WUBlastX LTR_Ngaro 159754 160332 274 - . . scaffold502 WUBlastX LTR_Ngaro 160301 160732 73 - . . scaffold502 WUBlastX LTR_Ngaro 160571 160765 69 - . . scaffold502 WUBlastX LTR_Ngaro 160795 160890 23 - . . scaffold502 TRF Tandem_Repeat 167005 167092 148 + . . scaffold502 TRF Tandem_Repeat 176054 176099 67 + . . scaffold502 TRF Tandem_Repeat 178684 178744 104 + . . scaffold502 WUBlastX LTR_Gypsy 179422 179610 26 + . . scaffold502 WUBlastX LTR_Gypsy-Cigr 179482 179616 32 + . . scaffold502 WUBlastX LTR_Gypsy-Cigr 179609 179905 78 + . . scaffold502 WUBlastX LTR_Gypsy 179780 179986 27 + . . scaffold502 WUBlastX LTR_Gypsy 179994 180248 24 + . . scaffold502 WUBlastX LTR_Gypsy 180087 180215 37 + . . scaffold502 WUBlastX LTR_Lenti 180162 180308 23 + . . scaffold502 WUBlastX LTR_Gypsy 180299 180589 20 + . . scaffold502 WUBlastX LTR_Gypsy 180434 180589 33 + . . scaffold502 WUBlastX LTR_Gypsy 180591 180704 21 + . . scaffold502 WUBlastX LTR_Gypsy-Cigr 180642 181949 642 + . . scaffold502 WUBlastX LTR_Gypsy-Cigr 180987 181946 718 + . . scaffold502 WUBlastX LTR_Gypsy 182253 182459 26 + . . scaffold502 WUBlastX LTR_Gypsy 182298 182468 37 + . . scaffold502 WUBlastX LTR_Gypsy 182328 182453 49 + . . scaffold502 WUBlastX LTR_Gypsy 182349 182474 82 + . . scaffold502 WUBlastX LTR_Gypsy 182384 182896 138 + . . scaffold502 WUBlastX LTR_Gypsy-Cigr 182540 182911 331 + . . scaffold502 WUBlastX LTR_Gypsy 182540 183070 215 + . . scaffold502 WUBlastX LTR_Gypsy 182540 182980 230 + . . scaffold502 WUBlastX LTR_Gypsy 183052 183516 130 + . . scaffold502 WUBlastX LTR_Gypsy 183163 183675 150 + . . scaffold502 WUBlastX LTR_Gypsy-Cigr 183421 183822 119 + . . scaffold502 WUBlastX LTR_Gypsy 183433 183672 179 + . . scaffold502 WUBlastX LTR_Gypsy-Cigr 183765 183989 46 + . . scaffold502 WUBlastX LTR_Gypsy 184844 185068 58 + . . scaffold502 WUBlastX LTR_Gypsy-Cigr 184853 185041 104 + . . scaffold502 GLEAN promoter 186169 187168 0.64304 + . ID=CGI_10024314; scaffold502 GLEAN mRNA 187169 187738 0.64304 + . ID=CGI_10024314; scaffold502 TRF Tandem_Repeat 188267 188301 61 + . . scaffold502 WUBlastX LTR_Pao 190252 196254 2122 + . . scaffold502 WUBlastX LTR_Pao 192844 196251 2687 + . . scaffold502 GLEAN promoter 197354 198353 0.64304 + . ID=CGI_10024315; scaffold502 GLEAN mRNA 198354 199532 0.64304 + . ID=CGI_10024315; scaffold502 GLEAN mRNA 200661 204123 0.612374 - . ID=CGI_10024316; scaffold502 WUBlastX DNA_IS4EU 201428 201649 40 - . . scaffold502 GLEAN promoter 204124 205123 0.612374 - . ID=CGI_10024316; scaffold502 WUBlastX DNA_Harbinger 214985 215077 37 - . . scaffold502 TRF Tandem_Repeat 217152 217205 108 + . . scaffold502 TRF Tandem_Repeat 218427 218464 76 + . . scaffold502 WUBlastX LINE_RTE-X 223948 224706 70 - . . scaffold502 WUBlastX LINE_RTE-X 224483 225685 204 - . . scaffold502 WUBlastX LINE_RTE-X 224750 225655 254 - . . scaffold502 WUBlastX LINE_RTE-X 227330 227548 21 - . . scaffold502 WUBlastX LINE_RTE-X 227393 227554 46 - . . scaffold502 GLEAN promoter 227456 228455 0.64304 + . ID=CGI_10024317; scaffold502 GLEAN mRNA 228456 240472 0.64304 + . ID=CGI_10024317; scaffold502 WUBlastX LINE_L1 248304 248420 27 + . . scaffold502 WUBlastX LINE_L1-Tx1 249409 250512 266 + . . scaffold502 WUBlastX LINE_L1 250418 250717 102 + . . scaffold502 WUBlastX LINE_L1-Tx1 250427 250807 90 + . . scaffold502 WUBlastX LINE_L1 250800 250925 22 + . . scaffold502 TRF Tandem_Repeat 250936 250964 58 + . . scaffold502 TRF Tandem_Repeat 251156 251210 62 + . . scaffold502 WUBlastX LTR_Gypsy 251794 251973 43 - . . scaffold502 WUBlastX LTR_Gypsy 251972 252418 93 - . . scaffold502 WUBlastX LTR_Gypsy 252053 252424 138 - . . scaffold502 WUBlastX LTR_Gypsy 252450 252716 86 - . . scaffold502 WUBlastX LTR_Gypsy 252513 252716 90 - . . scaffold502 WUBlastX LTR_Gypsy 252570 252755 84 - . . scaffold502 WUBlastX LTR_Gypsy 252570 252872 47 - . . scaffold502 WUBlastX LTR_Gypsy 252926 253201 45 - . . scaffold502 WUBlastX LTR_Gypsy 252926 253048 58 - . . scaffold502 TRF Tandem_Repeat 258484 258547 119 + . . scaffold502 TRF Tandem_Repeat 264551 264693 142 + . . scaffold502 GLEAN promoter 264921 265920 0.339102 + . ID=CGI_10024318; scaffold502 GLEAN mRNA 265921 292012 0.339102 + . ID=CGI_10024318; scaffold502 TRF Tandem_Repeat 266983 267091 74 + . . scaffold502 WUBlastX LINE_Penelope 279315 280328 26 - . . scaffold502 WUBlastX LINE_Penelope 279831 280037 47 - . . scaffold502 WUBlastX LINE_Penelope 280349 280522 28 - . . scaffold502 WUBlastX LINE_Penelope 280391 280528 33 - . . scaffold502 WUBlastX LINE_Penelope 280394 280507 47 - . . scaffold502 TRF Tandem_Repeat 285361 285665 369 + . . scaffold502 TRF Tandem_Repeat 285363 285665 371 + . . scaffold502 TRF Tandem_Repeat 285393 285667 316 + . . scaffold502 TRF Tandem_Repeat 291050 291210 216 + . . scaffold502 TRF Tandem_Repeat 292506 292549 79 + . . scaffold502 TRF Tandem_Repeat 292566 293418 785 + . . scaffold502 TRF Tandem_Repeat 292575 293418 785 + . . scaffold502 GLEAN mRNA 298003 302365 0.889922 - . ID=CGI_10024319; scaffold502 GLEAN promoter 302366 303365 0.889922 - . ID=CGI_10024319; scaffold502 GLEAN promoter 303914 304913 0.828077 + . ID=CGI_10024320; scaffold502 GLEAN mRNA 304914 310670 0.828077 + . ID=CGI_10024320; scaffold502 TRF Tandem_Repeat 314285 314341 51 + . . scaffold502 GLEAN mRNA 315094 319200 0.998539 - . ID=CGI_10024321; scaffold502 GLEAN promoter 318634 319633 1 + . ID=CGI_10024322; scaffold502 GLEAN promoter 319201 320200 0.998539 - . ID=CGI_10024321; scaffold502 GLEAN mRNA 319634 324795 1 + . ID=CGI_10024322; scaffold502 TRF Tandem_Repeat 323841 323890 100 + . . scaffold502 GLEAN mRNA 325984 329478 0.998877 - . ID=CGI_10024323; scaffold502 GLEAN promoter 329479 330478 0.998877 - . ID=CGI_10024323; scaffold502 TRF Tandem_Repeat 329695 329760 132 + . . scaffold502 GLEAN mRNA 335744 344960 0.966898 - . ID=CGI_10024324; scaffold502 TRF Tandem_Repeat 339435 339502 136 + . . scaffold502 TRF Tandem_Repeat 342147 342580 429 + . . scaffold502 GLEAN promoter 344961 345960 0.966898 - . ID=CGI_10024324; scaffold502 WUBlastX DNA_TcMar-Tc1 349253 349756 152 + . . scaffold502 WUBlastX DNA_TcMar-Tc1 349770 350009 129 + . . scaffold502 WUBlastX DNA_TcMar-Tc1 350032 350244 151 + . . scaffold502 GLEAN promoter 354329 355328 0.593391 + . ID=CGI_10024325; scaffold502 GLEAN mRNA 355329 360167 0.593391 + . ID=CGI_10024325; scaffold502 GLEAN mRNA 361147 367967 0.998021 - . ID=CGI_10024326; scaffold502 TRF Tandem_Repeat 367520 367553 50 + . . scaffold502 GLEAN promoter 367968 368967 0.998021 - . ID=CGI_10024326; scaffold502 GLEAN mRNA 368335 374997 0.996053 - . ID=CGI_10024327; scaffold502 TRF Tandem_Repeat 370883 370921 53 + . . scaffold502 TRF Tandem_Repeat 373775 373897 90 + . . scaffold502 TRF Tandem_Repeat 373896 374077 152 + . . scaffold502 TRF Tandem_Repeat 374699 374743 81 + . . scaffold502 GLEAN promoter 374998 375997 0.996053 - . ID=CGI_10024327; scaffold502 TRF Tandem_Repeat 377493 377525 66 + . . scaffold502 TRF Tandem_Repeat 380369 380479 102 + . . scaffold502 TRF Tandem_Repeat 382880 382941 124 + . . scaffold502 GLEAN promoter 388094 389093 1 + . ID=CGI_10024328; scaffold502 GLEAN mRNA 389094 392331 1 + . ID=CGI_10024328; scaffold502 TRF Tandem_Repeat 393678 393721 88 + . . scaffold502 GLEAN mRNA 398402 399595 0.412716 - . ID=CGI_10024329; scaffold502 GLEAN promoter 399596 400595 0.412716 - . ID=CGI_10024329; scaffold502 TRF Tandem_Repeat 435930 436186 301 + . . scaffold502 TRF Tandem_Repeat 435931 436180 295 + . . scaffold502 WUBlastX DNA_TcMar-Tc1 455005 455100 53 - . . scaffold502 WUBlastX DNA_TcMar-Tc1 455106 455951 383 - . . scaffold502 WUBlastX DNA_hAT 465963 466274 86 - . . scaffold502 WUBlastX DNA_hAT-Tip100 466062 466400 78 - . . scaffold502 WUBlastX LTR_Gypsy 467644 467754 28 + . . scaffold502 WUBlastX LTR_Gypsy 468171 468371 62 + . . scaffold502 WUBlastX LTR_Gypsy 468341 468535 94 + . . scaffold502 WUBlastX LTR_Gypsy 468344 468796 67 + . . scaffold502 WUBlastX LTR_Gypsy 468344 468508 102 + . . scaffold502 WUBlastX LTR_Gypsy 468344 468625 89 + . . scaffold502 WUBlastX LTR_Gypsy 469514 469639 20 + . . scaffold502 WUBlastX LTR_DIRS 470295 471194 61 + . . scaffold502 WUBlastX LTR_DIRS 470298 470795 92 + . . scaffold502 WUBlastX LTR_DIRS 470301 470663 131 + . . scaffold502 WUBlastX LTR_DIRS 471006 471266 114 + . . scaffold502 WUBlastX LTR_DIRS 471290 471655 80 + . . scaffold502 WUBlastX LTR_DIRS 471299 471559 128 + . . scaffold502 WUBlastX LTR_Gypsy 472046 472168 30 + . . scaffold502 WUBlastX LTR_Gypsy 472079 472195 35 + . . scaffold502 WUBlastX LTR_Gypsy 472129 472821 217 + . . scaffold502 WUBlastX LTR_Gypsy 472192 472950 93 + . . scaffold502 WUBlastX LTR_Gypsy 472855 473244 21 + . . scaffold502 WUBlastX LTR_Gypsy 473048 473608 103 + . . scaffold502 WUBlastX LTR_Gypsy 473309 473608 216 + . . scaffold502 WUBlastX LTR_Gypsy 473610 474002 29 + . . scaffold502 WUBlastX LTR_Gypsy 473613 473903 177 + . . scaffold502 WUBlastX LTR_Gypsy 474006 474560 25 + . . scaffold502 WUBlastX LTR_Gypsy 474006 474449 54 + . . scaffold502 WUBlastX LTR_Gypsy 474006 474359 73 + . . scaffold502 WUBlastX LTR_Gypsy 474006 474293 92 + . . scaffold502 WUBlastX LINE_CR1-L2 483378 483506 29 - . . scaffold502 WUBlastX LINE_L2 483414 483533 46 - . . scaffold502 WUBlastX LINE_L2 483586 483807 85 - . . scaffold502 WUBlastX LINE_CR1-L2 483598 483918 48 - . . scaffold502 TRF Tandem_Repeat 490537 490606 122 + . . scaffold502 GLEAN promoter 491308 492307 0.999364 + . ID=CGI_10024330; scaffold502 GLEAN mRNA 492308 500969 0.999364 + . ID=CGI_10024330; scaffold502 GLEAN mRNA 513364 518869 0.999994 - . ID=CGI_10024331; scaffold502 TRF Tandem_Repeat 514533 514602 122 + . . scaffold502 GLEAN promoter 518870 519869 0.999994 - . ID=CGI_10024331; scaffold502 GLEAN mRNA 521313 531463 0.998824 - . ID=CGI_10024332; scaffold502 GLEAN promoter 531464 532463 0.998824 - . ID=CGI_10024332; scaffold502 TRF Tandem_Repeat 536096 536155 86 + . . scaffold502 TRF Tandem_Repeat 536153 536187 61 + . . scaffold502 TRF Tandem_Repeat 536400 537107 1092 + . . scaffold502 GLEAN mRNA 539676 540917 0.999997 - . ID=CGI_10024333; scaffold502 GLEAN promoter 540918 541917 0.999997 - . ID=CGI_10024333; scaffold502 WUBlastX LINE_Penelope 549580 549960 85 - . . scaffold502 WUBlastX DNA_MuDR 557867 558097 39 + . . scaffold502 WUBlastX DNA_MuDR 558096 558203 58 + . . scaffold502 WUBlastX DNA_MuDR 558208 558486 62 + . . scaffold502 WUBlastX DNA_MuDR 558407 558664 65 + . . scaffold502 WUBlastX DNA_MuDR 558482 558736 81 + . . scaffold502 GLEAN promoter 560278 561277 0.996819 + . ID=CGI_10024334; scaffold502 GLEAN mRNA 561278 564224 0.996819 + . ID=CGI_10024334; scaffold502 GLEAN mRNA 565112 575642 1 - . ID=CGI_10024335; scaffold502 TRF Tandem_Repeat 566608 567257 924 + . . scaffold502 TRF Tandem_Repeat 567955 568225 431 + . . scaffold502 GLEAN promoter 573231 574230 0.544521 + . ID=CGI_10024336; scaffold502 GLEAN mRNA 574231 594075 0.544521 + . ID=CGI_10024336; scaffold502 WUBlastX LINE_RTE-X 574765 574986 57 + . . scaffold502 GLEAN promoter 575643 576642 1 - . ID=CGI_10024335; scaffold502 TRF Tandem_Repeat 579479 580166 695 + . . scaffold502 TRF Tandem_Repeat 580658 581107 657 + . . scaffold502 TRF Tandem_Repeat 583634 583765 201 + . . scaffold502 TRF Tandem_Repeat 583636 584077 501 + . . scaffold502 TRF Tandem_Repeat 583732 584100 421 + . . scaffold502 TRF Tandem_Repeat 587360 588370 945 + . . scaffold502 TRF Tandem_Repeat 590355 590554 391 + . . scaffold502 GLEAN promoter 595582 596581 0.98393 + . ID=CGI_10024337; scaffold502 GLEAN mRNA 596582 597523 0.98393 + . ID=CGI_10024337; scaffold502 WUBlastX LINE_RTE-X 600854 601381 139 - . . scaffold502 WUBlastX LINE_RTE-X 600989 601372 172 - . . scaffold502 GLEAN promoter 605784 606783 0.999597 + . ID=CGI_10024338; scaffold502 GLEAN mRNA 606784 627664 0.999597 + . ID=CGI_10024338; scaffold502 TRF Tandem_Repeat 617821 617864 88 + . . scaffold502 WUBlastX LINE_CR1 624950 625684 468 - . . scaffold502 WUBlastX LINE_CR1 625286 625795 124 - . . scaffold502 GLEAN mRNA 629978 652305 0.8139 - . ID=CGI_10024339; scaffold502 TRF Tandem_Repeat 641213 642681 1530 + . . scaffold502 TRF Tandem_Repeat 641901 642124 211 + . . scaffold502 GLEAN promoter 652306 653305 0.8139 - . ID=CGI_10024339; scaffold502 GLEAN mRNA 652836 684270 0.854871 - . ID=CGI_10024340; scaffold502 TRF Tandem_Repeat 679452 679496 90 + . . scaffold502 GLEAN promoter 684271 685270 0.854871 - . ID=CGI_10024340; scaffold502 GLEAN mRNA 684754 689421 1 - . ID=CGI_10024341; scaffold502 GLEAN promoter 689422 690421 1 - . ID=CGI_10024341; scaffold502 GLEAN promoter 689558 690557 0.999676 + . ID=CGI_10024342; scaffold502 GLEAN mRNA 690558 704217 0.999676 + . ID=CGI_10024342; scaffold502 TRF Tandem_Repeat 694652 694695 70 + . . scaffold502 TRF Tandem_Repeat 694653 694691 60 + . . scaffold502 GLEAN mRNA 705983 709018 1 - . ID=CGI_10024343; scaffold502 GLEAN promoter 709019 710018 1 - . ID=CGI_10024343; scaffold502 GLEAN promoter 709744 710743 0.937407 + . ID=CGI_10024344; scaffold502 GLEAN mRNA 710744 712364 0.937407 + . ID=CGI_10024344; scaffold502 GLEAN promoter 712236 713235 0.998302 + . ID=CGI_10024345; scaffold502 GLEAN mRNA 713236 715127 0.998302 + . ID=CGI_10024345; scaffold502 TRF Tandem_Repeat 713575 714573 1005 + . . scaffold502 TRF Tandem_Repeat 715897 716119 412 + . . scaffold502 TRF Tandem_Repeat 738611 738668 107 + . . scaffold502 TRF Tandem_Repeat 742749 742800 104 + . . scaffold502 TRF Tandem_Repeat 750720 750786 89 + . . scaffold502 WUBlastX DNA_TcMar-Tc1 752467 752898 95 + . . scaffold502 WUBlastX DNA_TcMar-Tc1 752885 753415 257 + . . scaffold502 TRF Tandem_Repeat 761364 761398 70 + . . scaffold502 WUBlastX LINE_Penelope 762740 763114 32 - . . scaffold502 TRF Tandem_Repeat 774004 774070 116 + . . scaffold502 GLEAN promoter 777874 778873 0.91725 + . ID=CGI_10024346; scaffold502 GLEAN mRNA 778874 801211 0.91725 + . ID=CGI_10024346; scaffold502 TRF Tandem_Repeat 780176 780206 53 + . . scaffold502 WUBlastX LINE_Penelope 790770 791084 52 - . . scaffold502 WUBlastX LTR_Ngaro 797610 798503 202 - . . scaffold502 TRF Tandem_Repeat 806735 806766 64 + . . scaffold502 GLEAN mRNA 820423 832927 0.896224 - . ID=CGI_10024347; scaffold502 TRF Tandem_Repeat 824187 824394 285 + . . scaffold502 TRF Tandem_Repeat 832204 832364 69 + . . scaffold502 GLEAN promoter 832928 833927 0.896224 - . ID=CGI_10024347; scaffold502 TRF Tandem_Repeat 839582 839614 66 + . . scaffold502 TRF Tandem_Repeat 881374 881400 54 + . . scaffold502 TRF Tandem_Repeat 883171 883221 102 + . . scaffold502 TRF Tandem_Repeat 894527 895920 1235 + . . scaffold502 TRF Tandem_Repeat 896095 896131 56 + . . scaffold502 TRF Tandem_Repeat 902885 902944 120 + . . scaffold502 TRF Tandem_Repeat 903276 903333 116 + . . scaffold502 WUBlastX LINE_L1-Tx1 910763 911269 271 + . . scaffold502 WUBlastX LINE_L1-Tx1 910967 911338 107 + . . scaffold502 WUBlastX LINE_L1-Tx1 911326 912072 259 + . . scaffold502 TRF Tandem_Repeat 919694 919759 62 + . . scaffold502 TRF Tandem_Repeat 919783 920909 1682 + . . scaffold502 TRF Tandem_Repeat 921894 922686 920 + . . scaffold502 GLEAN mRNA 923184 925106 0.997556 - . ID=CGI_10024348; scaffold502 GLEAN promoter 925107 926106 0.997556 - . ID=CGI_10024348; scaffold502 TRF Tandem_Repeat 931513 931552 80 + . . scaffold503 TRF Tandem_Repeat 9748 9786 78 + . . scaffold503 TRF Tandem_Repeat 12574 12757 260 + . . scaffold503 TRF Tandem_Repeat 12574 12834 319 + . . scaffold503 WUBlastX LINE_L2 16019 16420 27 - . . scaffold503 WUBlastX LINE_RTE-X 16025 16270 101 - . . scaffold503 WUBlastX LINE_RTE-X 16025 16318 81 - . . scaffold503 WUBlastX LINE_L1-Tx1 20889 21377 57 - . . scaffold503 WUBlastX LINE_L1-Tx1 20973 21392 61 - . . scaffold503 GLEAN promoter 26131 27130 0.972133 + . ID=CGI_10006759; scaffold503 GLEAN mRNA 27131 33755 0.972133 + . ID=CGI_10006759; scaffold503 TRF Tandem_Repeat 45132 45188 114 + . . scaffold503 GLEAN promoter 45380 46379 0.999675 + . ID=CGI_10006760; scaffold503 GLEAN mRNA 46380 62171 0.999675 + . ID=CGI_10006760; scaffold503 GLEAN mRNA 63108 80290 0.999459 - . ID=CGI_10006761; scaffold503 GLEAN promoter 78688 79687 0.999769 + . ID=CGI_10006762; scaffold503 GLEAN mRNA 79688 84620 0.999769 + . ID=CGI_10006762; scaffold503 GLEAN promoter 80291 81290 0.999459 - . ID=CGI_10006761; scaffold503 TRF Tandem_Repeat 81613 82444 985 + . . scaffold503 TRF Tandem_Repeat 93853 93941 178 + . . scaffold503 GLEAN promoter 94147 95146 0.999996 + . ID=CGI_10006763; scaffold503 GLEAN mRNA 95147 103207 0.999996 + . ID=CGI_10006763; scaffold503 GLEAN promoter 113874 114873 0.999994 + . ID=CGI_10006764; scaffold503 GLEAN mRNA 114874 120009 0.999994 + . ID=CGI_10006764; scaffold503 TRF Tandem_Repeat 123291 123716 530 + . . scaffold503 GLEAN mRNA 126480 134389 0.65111 - . ID=CGI_10006765; scaffold503 GLEAN promoter 134390 135389 0.65111 - . ID=CGI_10006765; scaffold503 WUBlastX LINE_RTE-BovB 138982 139437 51 - . . scaffold503 WUBlastX LINE_RTE-BovB 139126 139491 74 - . . scaffold503 GLEAN promoter 148176 149175 0.999509 + . ID=CGI_10006766; scaffold503 GLEAN mRNA 149176 157223 0.999509 + . ID=CGI_10006766; scaffold503 TRF Tandem_Repeat 155719 155887 162 + . . scaffold503 TRF Tandem_Repeat 158120 158182 126 + . . scaffold503 WUBlastX LTR_DIRS 160356 161027 160 + . . scaffold503 WUBlastX LTR_DIRS 161152 161343 101 + . . scaffold504 WUBlastX LTR_Gypsy 465 551 24 + . . scaffold504 WUBlastX LTR_Gypsy 486 920 120 + . . scaffold504 WUBlastX LTR_Gypsy 652 1557 466 + . . scaffold504 GLEAN mRNA 3619 3981 1 - . ID=CGI_10016011; scaffold504 GLEAN promoter 3982 4981 1 - . ID=CGI_10016011; scaffold504 GLEAN mRNA 4327 7355 1 - . ID=CGI_10016012; scaffold504 WUBlastX LTR_Gypsy 6120 6248 20 + . . scaffold504 WUBlastX LTR_Gypsy 6346 6660 73 + . . scaffold504 WUBlastX LTR_Gypsy 6545 7147 125 + . . scaffold504 WUBlastX LTR_Gypsy 6578 7054 141 + . . scaffold504 WUBlastX LTR_Gypsy 6656 7234 86 + . . scaffold504 WUBlastX LTR_Gypsy 6656 7048 295 + . . scaffold504 GLEAN promoter 7356 8355 1 - . ID=CGI_10016012; scaffold504 TRF Tandem_Repeat 9968 10015 96 + . . scaffold504 GLEAN promoter 15018 16017 0.844002 + . ID=CGI_10016013; scaffold504 GLEAN mRNA 16018 24943 0.844002 + . ID=CGI_10016013; scaffold504 GLEAN mRNA 16195 31889 0.544851 - . ID=CGI_10016014; scaffold504 TRF Tandem_Repeat 18696 18729 68 + . . scaffold504 GLEAN promoter 31890 32889 0.544851 - . ID=CGI_10016014; scaffold504 GLEAN mRNA 32021 38270 1 - . ID=CGI_10016015; scaffold504 GLEAN promoter 38271 39270 1 - . ID=CGI_10016015; scaffold504 GLEAN mRNA 50895 74674 0.999922 - . ID=CGI_10016016; scaffold504 WUBlastX LINE_Penelope 56078 56341 47 - . . scaffold504 TRF Tandem_Repeat 66006 66076 135 + . . scaffold504 TRF Tandem_Repeat 66679 66838 241 + . . scaffold504 GLEAN promoter 74675 75674 0.999922 - . ID=CGI_10016016; scaffold504 GLEAN promoter 75990 76989 0.813305 + . ID=CGI_10016017; scaffold504 GLEAN mRNA 76990 107612 0.813305 + . ID=CGI_10016017; scaffold504 TRF Tandem_Repeat 83195 83265 97 + . . scaffold504 TRF Tandem_Repeat 84192 84255 83 + . . scaffold504 TRF Tandem_Repeat 102582 102803 243 + . . scaffold504 GLEAN mRNA 112041 122139 0.999999 - . ID=CGI_10016018; scaffold504 WUBlastX LINE_RTE-X 113379 114929 329 + . . scaffold504 WUBlastX LINE_RTE-X 113673 114935 393 + . . scaffold504 GLEAN promoter 121921 122920 0.540002 + . ID=CGI_10016019; scaffold504 GLEAN promoter 122140 123139 0.999999 - . ID=CGI_10016018; scaffold504 GLEAN mRNA 122921 126491 0.540002 + . ID=CGI_10016019; scaffold504 TRF Tandem_Repeat 125170 125265 93 + . . scaffold504 TRF Tandem_Repeat 125192 125330 94 + . . scaffold504 TRF Tandem_Repeat 125209 125316 100 + . . scaffold504 TRF Tandem_Repeat 132142 132191 93 + . . scaffold504 TRF Tandem_Repeat 135489 135813 401 + . . scaffold504 TRF Tandem_Repeat 136826 137081 334 + . . scaffold504 TRF Tandem_Repeat 138972 139034 126 + . . scaffold504 GLEAN mRNA 140435 141631 0.865546 - . ID=CGI_10016020; scaffold504 GLEAN promoter 141632 142631 0.865546 - . ID=CGI_10016020; scaffold504 GLEAN promoter 143990 144989 0.593391 + . ID=CGI_10016021; scaffold504 GLEAN mRNA 144990 146701 0.593391 + . ID=CGI_10016021; scaffold504 GLEAN promoter 153333 154332 1 + . ID=CGI_10016022; scaffold504 GLEAN mRNA 154333 156575 1 + . ID=CGI_10016022; scaffold504 TRF Tandem_Repeat 159012 159063 68 + . . scaffold504 TRF Tandem_Repeat 172986 173024 53 + . . scaffold504 TRF Tandem_Repeat 173165 174285 1208 + . . scaffold504 GLEAN mRNA 176392 179041 1 - . ID=CGI_10016023; scaffold504 WUBlastX LINE_L2 177047 177403 103 - . . scaffold504 WUBlastX LINE_L2 177381 177569 36 - . . scaffold504 WUBlastX LINE_L2 177574 177912 42 - . . scaffold504 WUBlastX LINE_L2 177586 177873 82 - . . scaffold504 GLEAN promoter 179042 180041 1 - . ID=CGI_10016023; scaffold504 GLEAN promoter 186675 187674 0.863315 + . ID=CGI_10016024; scaffold504 GLEAN mRNA 187675 190227 0.863315 + . ID=CGI_10016024; scaffold504 GLEAN mRNA 190507 197660 0.990713 - . ID=CGI_10016025; scaffold504 TRF Tandem_Repeat 194496 194524 51 + . . scaffold504 TRF Tandem_Repeat 196993 197097 183 + . . scaffold504 GLEAN promoter 197661 198660 0.990713 - . ID=CGI_10016025; scaffold504 TRF Tandem_Repeat 198896 199083 153 + . . scaffold504 TRF Tandem_Repeat 202630 202658 58 + . . scaffold504 GLEAN promoter 208248 209247 0.98336 + . ID=CGI_10016026; scaffold504 GLEAN mRNA 209248 225927 0.98336 + . ID=CGI_10016026; scaffold504 WUBlastX LINE_L1 212731 213033 37 + . . scaffold504 TRF Tandem_Repeat 213400 213514 178 + . . scaffold504 GLEAN mRNA 229448 243335 1 - . ID=CGI_10016027; scaffold504 TRF Tandem_Repeat 233662 233715 101 + . . scaffold504 WUBlastX LINE_RTE-X 235906 236277 100 - . . scaffold504 WUBlastX LINE_RTE-X 235975 236343 106 - . . scaffold504 WUBlastX LINE_RTE-X 236032 236535 220 - . . scaffold504 GLEAN promoter 243336 244335 1 - . ID=CGI_10016027; scaffold504 TRF Tandem_Repeat 243824 243922 51 + . . scaffold504 GLEAN promoter 244472 245471 0.367349 + . ID=CGI_10016028; scaffold504 GLEAN mRNA 245472 293737 0.367349 + . ID=CGI_10016028; scaffold504 TRF Tandem_Repeat 249144 249523 460 + . . scaffold504 WUBlastX LINE_L2 253968 254294 91 - . . scaffold504 WUBlastX LINE_L1 254276 254449 23 - . . scaffold504 WUBlastX LINE_L2 254354 256138 1108 - . . scaffold504 GLEAN promoter 293379 294378 0.957597 + . ID=CGI_10016029; scaffold504 GLEAN mRNA 294379 296349 0.957597 + . ID=CGI_10016029; scaffold504 TRF Tandem_Repeat 302372 302419 96 + . . scaffold504 GLEAN mRNA 303866 305158 0.999984 - . ID=CGI_10016030; scaffold504 GLEAN promoter 305159 306158 0.999984 - . ID=CGI_10016030; scaffold504 TRF Tandem_Repeat 311302 311474 256 + . . scaffold504 TRF Tandem_Repeat 312461 312509 98 + . . scaffold504 GLEAN promoter 315469 316468 1 + . ID=CGI_10016031; scaffold504 GLEAN mRNA 316469 318520 1 + . ID=CGI_10016031; scaffold504 GLEAN mRNA 319912 324924 0.989331 - . ID=CGI_10016032; scaffold504 TRF Tandem_Repeat 320125 320153 58 + . . scaffold504 GLEAN promoter 324774 325773 0.993528 + . ID=CGI_10016034; scaffold504 GLEAN promoter 324925 325924 0.989331 - . ID=CGI_10016032; scaffold504 GLEAN mRNA 325774 350879 0.993528 + . ID=CGI_10016034; scaffold504 TRF Tandem_Repeat 327076 327129 74 + . . scaffold504 TRF Tandem_Repeat 328551 329766 1535 + . . scaffold504 TRF Tandem_Repeat 335221 335268 89 + . . scaffold504 WUBlastX DNA_TcMar-Tc1 377831 378859 444 + . . scaffold504 GLEAN promoter 392536 393535 0.999885 + . ID=CGI_10016035; scaffold504 GLEAN mRNA 393536 397725 0.999885 + . ID=CGI_10016035; scaffold504 TRF Tandem_Repeat 400225 400254 51 + . . scaffold504 TRF Tandem_Repeat 402957 403226 163 + . . scaffold504 GLEAN mRNA 406956 408928 0.937847 - . ID=CGI_10016036; scaffold504 GLEAN promoter 408929 409928 0.937847 - . ID=CGI_10016036; scaffold504 WUBlastX LINE_CR1 414068 414424 57 - . . scaffold504 WUBlastX LINE_CR1-L2 414131 414424 63 - . . scaffold504 WUBlastX LINE_L2 414423 414611 55 - . . scaffold504 WUBlastX LINE_L2 414423 414704 28 - . . scaffold504 WUBlastX LINE_L2 414423 414566 56 - . . scaffold504 WUBlastX LINE_L2 414429 414659 39 - . . scaffold504 WUBlastX LINE_CR1 415156 415227 20 - . . scaffold504 WUBlastX LINE_RTE-X 415250 415348 53 - . . scaffold504 WUBlastX LINE_L2 415262 415405 23 - . . scaffold504 TRF Tandem_Repeat 429480 429522 86 + . . scaffold504 TRF Tandem_Repeat 452062 452128 71 + . . scaffold504 TRF Tandem_Repeat 452639 452696 98 + . . scaffold504 TRF Tandem_Repeat 452702 452726 50 + . . scaffold505 WUBlastX LINE_RTE-BovB 2442 2588 38 - . . scaffold505 GLEAN promoter 34185 35184 0.999676 + . ID=CGI_10002961; scaffold505 GLEAN mRNA 35185 48583 0.999676 + . ID=CGI_10002961; scaffold505 TRF Tandem_Repeat 54228 54314 86 + . . scaffold505 TRF Tandem_Repeat 54394 54588 133 + . . scaffold505 TRF Tandem_Repeat 54630 54744 86 + . . scaffold505 WUBlastX LINE_L2 55665 55784 82 - . . scaffold505 GLEAN promoter 57053 58052 0.991132 + . ID=CGI_10002962; scaffold505 GLEAN mRNA 58053 60107 0.991132 + . ID=CGI_10002962; scaffold506 WUBlastX DNA_Harbinger 85 204 87 - . . scaffold506 TRF Tandem_Repeat 2822 2878 69 + . . scaffold506 GLEAN mRNA 3309 21287 0.84057 - . ID=CGI_10019249; scaffold506 TRF Tandem_Repeat 12586 12771 90 + . . scaffold506 TRF Tandem_Repeat 15463 15570 81 + . . scaffold506 TRF Tandem_Repeat 15516 15596 63 + . . scaffold506 TRF Tandem_Repeat 19382 19442 122 + . . scaffold506 GLEAN promoter 21288 22287 0.84057 - . ID=CGI_10019249; scaffold506 GLEAN mRNA 21405 33530 0.999675 - . ID=CGI_10019250; scaffold506 TRF Tandem_Repeat 25100 25155 76 + . . scaffold506 TRF Tandem_Repeat 25103 25155 88 + . . scaffold506 TRF Tandem_Repeat 31912 31952 73 + . . scaffold506 GLEAN promoter 33531 34530 0.999675 - . ID=CGI_10019250; scaffold506 GLEAN promoter 33838 34837 1 + . ID=CGI_10019251; scaffold506 GLEAN mRNA 34838 39611 1 + . ID=CGI_10019251; scaffold506 GLEAN mRNA 39848 54745 1 - . ID=CGI_10019252; scaffold506 TRF Tandem_Repeat 48484 48540 105 + . . scaffold506 GLEAN promoter 54746 55745 1 - . ID=CGI_10019252; scaffold506 GLEAN promoter 56144 57143 0.999997 + . ID=CGI_10019253; scaffold506 GLEAN mRNA 57144 61332 0.999997 + . ID=CGI_10019253; scaffold506 GLEAN mRNA 59763 74417 0.999676 - . ID=CGI_10019254; scaffold506 TRF Tandem_Repeat 62309 62341 66 + . . scaffold506 TRF Tandem_Repeat 73743 73792 100 + . . scaffold506 GLEAN promoter 74418 75417 0.999676 - . ID=CGI_10019254; scaffold506 TRF Tandem_Repeat 75096 75126 62 + . . scaffold506 GLEAN promoter 75415 76414 1 + . ID=CGI_10019255; scaffold506 GLEAN mRNA 76415 80373 1 + . ID=CGI_10019255; scaffold506 GLEAN promoter 82869 83868 0.926793 + . ID=CGI_10019256; scaffold506 GLEAN mRNA 83869 97835 0.926793 + . ID=CGI_10019256; scaffold506 TRF Tandem_Repeat 89703 89739 65 + . . scaffold506 TRF Tandem_Repeat 90627 90670 79 + . . scaffold506 TRF Tandem_Repeat 92101 92372 400 + . . scaffold506 TRF Tandem_Repeat 92112 92372 441 + . . scaffold506 TRF Tandem_Repeat 98520 98552 66 + . . scaffold506 TRF Tandem_Repeat 99198 99226 58 + . . scaffold506 TRF Tandem_Repeat 99231 99264 50 + . . scaffold506 GLEAN mRNA 102977 118813 0.836195 - . ID=CGI_10019257; scaffold506 TRF Tandem_Repeat 117661 117688 56 + . . scaffold506 GLEAN promoter 118814 119813 0.836195 - . ID=CGI_10019257; scaffold506 TRF Tandem_Repeat 121041 121106 123 + . . scaffold506 TRF Tandem_Repeat 126817 126885 129 + . . scaffold506 TRF Tandem_Repeat 126883 126963 162 + . . scaffold506 TRF Tandem_Repeat 128893 129029 267 + . . scaffold506 TRF Tandem_Repeat 138572 138596 50 + . . scaffold506 GLEAN mRNA 149757 153671 0.999986 - . ID=CGI_10019258; scaffold506 TRF Tandem_Repeat 152163 152225 126 + . . scaffold506 GLEAN promoter 153672 154671 0.999986 - . ID=CGI_10019258; scaffold506 TRF Tandem_Repeat 159585 159633 71 + . . scaffold506 GLEAN mRNA 172585 200240 0.798105 - . ID=CGI_10019259; scaffold506 TRF Tandem_Repeat 197735 197790 112 + . . scaffold506 GLEAN promoter 200241 201240 0.798105 - . ID=CGI_10019259; scaffold506 GLEAN promoter 205000 205999 0.646971 + . ID=CGI_10019260; scaffold506 GLEAN mRNA 206000 216176 0.646971 + . ID=CGI_10019260; scaffold506 GLEAN mRNA 218467 226036 0.99818 - . ID=CGI_10019261; scaffold506 GLEAN promoter 226037 227036 0.99818 - . ID=CGI_10019261; scaffold506 GLEAN promoter 226859 227858 0.99998 + . ID=CGI_10019262; scaffold506 GLEAN mRNA 227859 244402 0.99998 + . ID=CGI_10019262; scaffold506 GLEAN promoter 248863 249862 0.986132 + . ID=CGI_10019263; scaffold506 GLEAN mRNA 249863 266288 0.986132 + . ID=CGI_10019263; scaffold506 TRF Tandem_Repeat 250873 250928 112 + . . scaffold506 TRF Tandem_Repeat 254966 255006 82 + . . scaffold506 TRF Tandem_Repeat 255409 255459 68 + . . scaffold506 TRF Tandem_Repeat 259059 259100 84 + . . scaffold506 TRF Tandem_Repeat 264118 264155 76 + . . scaffold506 WUBlastX LINE_CR1-L2 265617 265859 36 - . . scaffold506 GLEAN promoter 265943 266942 0.998917 + . ID=CGI_10019264; scaffold506 GLEAN mRNA 266943 268839 0.998917 + . ID=CGI_10019264; scaffold506 GLEAN promoter 268176 269175 0.997596 + . ID=CGI_10019265; scaffold506 GLEAN mRNA 269176 292918 0.997596 + . ID=CGI_10019265; scaffold506 TRF Tandem_Repeat 272493 273039 829 + . . scaffold506 TRF Tandem_Repeat 274554 274609 112 + . . scaffold506 TRF Tandem_Repeat 299388 299470 157 + . . scaffold506 TRF Tandem_Repeat 299633 300877 1175 + . . scaffold506 TRF Tandem_Repeat 299635 300877 1056 + . . scaffold506 TRF Tandem_Repeat 299636 300850 1421 + . . scaffold506 TRF Tandem_Repeat 301956 301994 78 + . . scaffold506 TRF Tandem_Repeat 302223 302261 69 + . . scaffold506 TRF Tandem_Repeat 304806 304845 80 + . . scaffold506 GLEAN mRNA 308787 311535 0.500198 - . ID=CGI_10019266; scaffold506 GLEAN promoter 311536 312535 0.500198 - . ID=CGI_10019266; scaffold506 TRF Tandem_Repeat 314576 314626 102 + . . scaffold506 TRF Tandem_Repeat 315956 316007 104 + . . scaffold506 TRF Tandem_Repeat 316436 316493 107 + . . scaffold506 TRF Tandem_Repeat 317379 317429 102 + . . scaffold506 TRF Tandem_Repeat 317858 317915 107 + . . scaffold506 TRF Tandem_Repeat 320575 320648 148 + . . scaffold506 GLEAN promoter 321763 322762 1 + . ID=CGI_10019267; scaffold506 GLEAN mRNA 322763 324482 1 + . ID=CGI_10019267; scaffold506 GLEAN mRNA 325943 329820 0.999676 - . ID=CGI_10019268; scaffold506 GLEAN promoter 328853 329852 0.840962 + . ID=CGI_10019269; scaffold506 GLEAN promoter 329821 330820 0.999676 - . ID=CGI_10019268; scaffold506 GLEAN mRNA 329853 343468 0.840962 + . ID=CGI_10019269; scaffold506 TRF Tandem_Repeat 333505 333644 153 + . . scaffold506 TRF Tandem_Repeat 339055 339194 153 + . . scaffold506 GLEAN mRNA 349054 361794 0.817461 - . ID=CGI_10019270; scaffold506 TRF Tandem_Repeat 349173 349269 107 + . . scaffold506 GLEAN promoter 361795 362794 0.817461 - . ID=CGI_10019270; scaffold506 GLEAN mRNA 369698 375046 0.965303 - . ID=CGI_10019271; scaffold506 TRF Tandem_Repeat 370882 370938 114 + . . scaffold506 GLEAN promoter 374934 375933 1 + . ID=CGI_10019272; scaffold506 GLEAN promoter 375047 376046 0.965303 - . ID=CGI_10019271; scaffold506 GLEAN mRNA 375934 383896 1 + . ID=CGI_10019272; scaffold506 TRF Tandem_Repeat 379718 379775 116 + . . scaffold506 TRF Tandem_Repeat 382339 382374 72 + . . scaffold506 GLEAN promoter 385828 386827 0.799315 + . ID=CGI_10019274; scaffold506 GLEAN mRNA 385855 390244 1 - . ID=CGI_10019273; scaffold506 GLEAN mRNA 386828 402929 0.799315 + . ID=CGI_10019274; scaffold506 GLEAN promoter 390245 391244 1 - . ID=CGI_10019273; scaffold506 TRF Tandem_Repeat 393000 393039 62 + . . scaffold506 TRF Tandem_Repeat 401168 401213 92 + . . scaffold506 GLEAN mRNA 406328 415042 0.751063 - . ID=CGI_10019275; scaffold506 TRF Tandem_Repeat 408087 408113 54 + . . scaffold506 TRF Tandem_Repeat 408962 409068 178 + . . scaffold506 TRF Tandem_Repeat 408962 409068 196 + . . scaffold506 GLEAN promoter 415043 416042 0.751063 - . ID=CGI_10019275; scaffold506 GLEAN promoter 426628 427627 0.39125 + . ID=CGI_10019276; scaffold506 GLEAN mRNA 427628 464588 0.39125 + . ID=CGI_10019276; scaffold506 TRF Tandem_Repeat 434396 434452 114 + . . scaffold506 WUBlastX LINE_L2 436077 436388 69 - . . scaffold506 TRF Tandem_Repeat 438473 438545 96 + . . scaffold506 TRF Tandem_Repeat 444253 444318 132 + . . scaffold506 TRF Tandem_Repeat 453600 453635 72 + . . scaffold506 TRF Tandem_Repeat 453652 453707 103 + . . scaffold506 TRF Tandem_Repeat 453964 454011 96 + . . scaffold506 TRF Tandem_Repeat 454851 454884 68 + . . scaffold506 TRF Tandem_Repeat 456251 456290 80 + . . scaffold506 TRF Tandem_Repeat 459625 459693 120 + . . scaffold506 TRF Tandem_Repeat 463643 463699 114 + . . scaffold506 TRF Tandem_Repeat 463789 463823 70 + . . scaffold506 WUBlastX LINE_L2 466699 467442 249 + . . scaffold506 WUBlastX LINE_RTE-X 469210 469395 86 + . . scaffold506 GLEAN promoter 470612 471611 0.509655 + . ID=CGI_10019277; scaffold506 GLEAN mRNA 471612 471974 0.509655 + . ID=CGI_10019277; scaffold506 TRF Tandem_Repeat 480043 480112 86 + . . scaffold506 TRF Tandem_Repeat 483160 483202 68 + . . scaffold506 TRF Tandem_Repeat 483701 483740 64 + . . scaffold506 TRF Tandem_Repeat 486054 486088 70 + . . scaffold506 TRF Tandem_Repeat 486377 486533 260 + . . scaffold506 TRF Tandem_Repeat 487106 487439 355 + . . scaffold506 TRF Tandem_Repeat 489957 490002 92 + . . scaffold506 GLEAN promoter 501438 502437 0.368875 + . ID=CGI_10019278; scaffold506 GLEAN mRNA 502438 516931 0.368875 + . ID=CGI_10019278; scaffold506 TRF Tandem_Repeat 503114 503173 120 + . . scaffold506 TRF Tandem_Repeat 510004 510114 204 + . . scaffold506 TRF Tandem_Repeat 511580 511630 102 + . . scaffold506 GLEAN promoter 517123 518122 0.918675 + . ID=CGI_10019279; scaffold506 GLEAN mRNA 518123 521417 0.918675 + . ID=CGI_10019279; scaffold506 TRF Tandem_Repeat 520393 520518 207 + . . scaffold506 GLEAN promoter 521445 522444 0.999997 + . ID=CGI_10019280; scaffold506 WUBlastX LTR_DIRS 521887 522024 45 + . . scaffold506 WUBlastX LTR_DIRS 521926 522030 52 + . . scaffold506 WUBlastX LTR_DIRS 522011 522730 385 + . . scaffold506 GLEAN mRNA 522445 523350 0.999997 + . ID=CGI_10019280; scaffold506 WUBlastX LTR_DIRS 522625 523338 456 + . . scaffold506 GLEAN mRNA 524002 524624 0.956157 - . ID=CGI_10019281; scaffold506 GLEAN promoter 524625 525624 0.956157 - . ID=CGI_10019281; scaffold506 GLEAN promoter 554361 555360 0.886004 + . ID=CGI_10019282; scaffold506 GLEAN mRNA 555361 563909 0.886004 + . ID=CGI_10019282; scaffold506 WUBlastX LINE_CR1 563794 563997 79 + . . scaffold506 WUBlastX LINE_CR1 563836 564003 84 + . . scaffold506 TRF Tandem_Repeat 584585 584613 58 + . . scaffold506 WUBlastX LINE_RTE-BovB 587674 588210 275 - . . scaffold506 WUBlastX LINE_RTE-BovB 588126 588449 192 - . . scaffold506 WUBlastX LINE_RTE-BovB 588449 589411 548 - . . scaffold506 WUBlastX LINE_RTE-BovB 589438 589665 164 - . . scaffold506 WUBlastX LINE_RTE-BovB 589601 590254 199 - . . scaffold506 WUBlastX LINE_RTE-BovB 589694 590233 352 - . . scaffold506 WUBlastX LINE_RTE-BovB 590164 590271 60 - . . scaffold507 TRF Tandem_Repeat 5378 5445 57 + . . scaffold507 TRF Tandem_Repeat 6826 6860 52 + . . scaffold507 GLEAN promoter 13663 14662 0.999973 + . ID=CGI_10019082; scaffold507 GLEAN mRNA 14663 20887 0.999973 + . ID=CGI_10019082; scaffold507 TRF Tandem_Repeat 16691 16758 118 + . . scaffold507 TRF Tandem_Repeat 21149 21198 100 + . . scaffold507 TRF Tandem_Repeat 23911 24016 80 + . . scaffold507 TRF Tandem_Repeat 24060 24118 63 + . . scaffold507 TRF Tandem_Repeat 24060 24104 63 + . . scaffold507 WUBlastX LINE_L2 25653 26330 240 - . . scaffold507 WUBlastX LINE_CR1-L2 26317 26481 88 - . . scaffold507 WUBlastX LINE_L2 26347 26583 63 - . . scaffold507 WUBlastX LINE_L2 26347 26469 120 - . . scaffold507 GLEAN promoter 27082 28081 0.563608 + . ID=CGI_10019083; scaffold507 GLEAN mRNA 28082 39253 0.563608 + . ID=CGI_10019083; scaffold507 WUBlastX DNA_Sola 29326 29385 32 + . . scaffold507 WUBlastX DNA_Sola 29739 29858 107 + . . scaffold507 TRF Tandem_Repeat 31383 32070 922 + . . scaffold507 TRF Tandem_Repeat 32075 32125 57 + . . scaffold507 TRF Tandem_Repeat 32929 33363 480 + . . scaffold507 WUBlastX LINE_L1 37951 38175 45 + . . scaffold507 WUBlastX LINE_L1-Tx1 37951 38259 38 + . . scaffold507 WUBlastX LINE_L1 38005 38184 77 + . . scaffold507 WUBlastX LINE_L1-Tx1 38244 38888 82 + . . scaffold507 WUBlastX LINE_L1-Tx1 39425 39481 24 + . . scaffold507 WUBlastX LTR_Ngaro 39844 40512 238 - . . scaffold507 WUBlastX LTR_Ngaro 40521 40853 149 - . . scaffold507 WUBlastX LTR_Ngaro 40542 40802 176 - . . scaffold507 WUBlastX LTR_Ngaro 40870 41190 134 - . . scaffold507 GLEAN mRNA 41380 65568 0.398486 - . ID=CGI_10019084; scaffold507 WUBlastX LTR_Ngaro 41925 42806 76 - . . scaffold507 WUBlastX LTR_Ngaro 41997 42536 123 - . . scaffold507 WUBlastX LTR_Ngaro 42099 42575 169 - . . scaffold507 WUBlastX LTR_Ngaro 42144 42536 190 - . . scaffold507 TRF Tandem_Repeat 45571 45602 64 + . . scaffold507 TRF Tandem_Repeat 64107 64172 132 + . . scaffold507 GLEAN promoter 65569 66568 0.398486 - . ID=CGI_10019084; scaffold507 GLEAN mRNA 67789 78050 0.999997 - . ID=CGI_10019085; scaffold507 GLEAN promoter 77523 78522 0.585203 + . ID=CGI_10019086; scaffold507 GLEAN promoter 78051 79050 0.999997 - . ID=CGI_10019085; scaffold507 GLEAN mRNA 78523 89335 0.585203 + . ID=CGI_10019086; scaffold507 TRF Tandem_Repeat 89657 89688 64 + . . scaffold507 TRF Tandem_Repeat 89734 90695 1195 + . . scaffold507 TRF Tandem_Repeat 91637 91783 73 + . . scaffold507 TRF Tandem_Repeat 94657 94698 68 + . . scaffold507 TRF Tandem_Repeat 94868 95545 1022 + . . scaffold507 TRF Tandem_Repeat 102496 103146 571 + . . scaffold507 GLEAN mRNA 119152 121602 0.756335 - . ID=CGI_10019087; scaffold507 GLEAN promoter 121603 122602 0.756335 - . ID=CGI_10019087; scaffold507 GLEAN mRNA 128643 131733 0.999009 - . ID=CGI_10019088; scaffold507 TRF Tandem_Repeat 130776 130807 64 + . . scaffold507 GLEAN promoter 131734 132733 0.999009 - . ID=CGI_10019088; scaffold507 WUBlastX DNA_Zator 145958 146143 106 - . . scaffold507 WUBlastX DNA_Zator 146133 146234 36 - . . scaffold507 TRF Tandem_Repeat 146298 146352 60 + . . scaffold507 TRF Tandem_Repeat 146419 146460 57 + . . scaffold507 TRF Tandem_Repeat 146629 148127 1687 + . . scaffold507 TRF Tandem_Repeat 147460 148087 554 + . . scaffold507 TRF Tandem_Repeat 149660 150609 1292 + . . scaffold507 TRF Tandem_Repeat 151576 152454 1219 + . . scaffold507 TRF Tandem_Repeat 169282 169494 184 + . . scaffold507 TRF Tandem_Repeat 173286 173337 68 + . . scaffold507 TRF Tandem_Repeat 173291 173341 75 + . . scaffold507 TRF Tandem_Repeat 173368 174495 1619 + . . scaffold507 TRF Tandem_Repeat 175687 175973 292 + . . scaffold507 GLEAN mRNA 176329 186367 0.999675 - . ID=CGI_10019089; scaffold507 WUBlastX LINE_L1-Tx1 178046 178381 171 + . . scaffold507 WUBlastX LINE_L1-Tx1 178392 178607 88 + . . scaffold507 WUBlastX LINE_L1-Tx1 178604 179119 149 + . . scaffold507 TRF Tandem_Repeat 179966 180055 85 + . . scaffold507 TRF Tandem_Repeat 180866 181275 354 + . . scaffold507 GLEAN promoter 186368 187367 0.999675 - . ID=CGI_10019089; scaffold507 TRF Tandem_Repeat 195010 195040 62 + . . scaffold507 WUBlastX LINE_RTE-X 196464 197384 70 + . . scaffold507 TRF Tandem_Repeat 205360 205394 61 + . . scaffold507 GLEAN mRNA 223122 224786 0.980953 - . ID=CGI_10019090; scaffold507 GLEAN promoter 224787 225786 0.980953 - . ID=CGI_10019090; scaffold507 WUBlastX LTR_Gypsy 233825 235327 247 + . . scaffold507 WUBlastX LTR_Gypsy 234992 236959 740 + . . scaffold507 WUBlastX LTR_Gypsy 235364 236959 1095 + . . scaffold507 WUBlastX LTR_Gypsy 237093 237233 21 + . . scaffold507 WUBlastX LTR_Gypsy 237129 237221 22 + . . scaffold507 WUBlastX LTR_Gypsy 237903 238043 21 + . . scaffold507 WUBlastX LTR_Gypsy 237939 238031 22 + . . scaffold507 TRF Tandem_Repeat 238719 238887 70 + . . scaffold507 TRF Tandem_Repeat 238792 238886 122 + . . scaffold507 GLEAN mRNA 239158 250342 0.867492 - . ID=CGI_10019092; scaffold507 GLEAN promoter 250343 251342 0.867492 - . ID=CGI_10019092; scaffold507 GLEAN mRNA 254357 273838 0.999949 - . ID=CGI_10019093; scaffold507 TRF Tandem_Repeat 255165 255200 54 + . . scaffold507 TRF Tandem_Repeat 264413 264903 582 + . . scaffold507 WUBlastX LINE_RTE-X 268945 269163 48 - . . scaffold507 WUBlastX LINE_RTE-X 268984 269160 84 - . . scaffold507 WUBlastX LINE_L2 270952 271167 42 + . . scaffold507 WUBlastX LINE_CR1-L2 271176 271298 26 + . . scaffold507 WUBlastX LINE_CR1-L2 271188 271373 24 + . . scaffold507 GLEAN promoter 273839 274838 0.999949 - . ID=CGI_10019093; scaffold507 TRF Tandem_Repeat 274857 274895 60 + . . scaffold507 GLEAN mRNA 285681 301039 0.642724 - . ID=CGI_10019094; scaffold507 TRF Tandem_Repeat 289939 290011 128 + . . scaffold507 TRF Tandem_Repeat 295266 295484 226 + . . scaffold507 TRF Tandem_Repeat 299284 299727 843 + . . scaffold507 GLEAN promoter 301040 302039 0.642724 - . ID=CGI_10019094; scaffold507 GLEAN promoter 307852 308851 0.590214 + . ID=CGI_10019095; scaffold507 GLEAN mRNA 308852 310873 0.590214 + . ID=CGI_10019095; scaffold507 TRF Tandem_Repeat 316429 316492 74 + . . scaffold507 TRF Tandem_Repeat 316432 316492 104 + . . scaffold507 GLEAN promoter 319879 320878 0.831366 + . ID=CGI_10019096; scaffold507 GLEAN mRNA 320879 321514 0.831366 + . ID=CGI_10019096; scaffold507 GLEAN promoter 352542 353541 0.986298 + . ID=CGI_10019097; scaffold507 GLEAN mRNA 353542 355725 0.986298 + . ID=CGI_10019097; scaffold507 WUBlastX LINE_Penelope 354607 355149 42 + . . scaffold507 TRF Tandem_Repeat 357607 358474 1288 + . . scaffold507 TRF Tandem_Repeat 357674 357761 61 + . . scaffold507 TRF Tandem_Repeat 358728 358775 60 + . . scaffold507 TRF Tandem_Repeat 359371 360109 992 + . . scaffold507 GLEAN mRNA 364238 375692 0.833202 - . ID=CGI_10019098; scaffold507 GLEAN promoter 375693 376692 0.833202 - . ID=CGI_10019098; scaffold507 TRF Tandem_Repeat 377196 377251 112 + . . scaffold507 GLEAN promoter 378799 379798 1 + . ID=CGI_10019099; scaffold507 TRF Tandem_Repeat 379020 379074 110 + . . scaffold507 GLEAN mRNA 379799 386221 1 + . ID=CGI_10019099; scaffold507 GLEAN mRNA 387560 391116 1 - . ID=CGI_10019100; scaffold507 TRF Tandem_Repeat 388832 388964 129 + . . scaffold507 TRF Tandem_Repeat 388865 389140 355 + . . scaffold507 GLEAN promoter 391117 392116 1 - . ID=CGI_10019100; scaffold507 WUBlastX LINE_RTE-X 398328 398741 55 - . . scaffold507 WUBlastX LINE_RTE-X 398328 398624 85 - . . scaffold507 GLEAN mRNA 398784 407884 0.653689 - . ID=CGI_10019101; scaffold507 TRF Tandem_Repeat 404371 404424 108 + . . scaffold507 GLEAN promoter 407885 408884 0.653689 - . ID=CGI_10019101; scaffold507 TRF Tandem_Repeat 415925 415960 72 + . . scaffold507 TRF Tandem_Repeat 418137 418183 87 + . . scaffold507 TRF Tandem_Repeat 418348 418393 92 + . . scaffold507 GLEAN promoter 421930 422929 0.999619 + . ID=CGI_10019102; scaffold507 GLEAN mRNA 422930 427202 0.999619 + . ID=CGI_10019102; scaffold507 TRF Tandem_Repeat 424522 424583 124 + . . scaffold507 TRF Tandem_Repeat 428761 428824 119 + . . scaffold507 TRF Tandem_Repeat 429340 429394 83 + . . scaffold507 TRF Tandem_Repeat 430730 430770 82 + . . scaffold507 TRF Tandem_Repeat 441225 441261 74 + . . scaffold507 TRF Tandem_Repeat 444295 444352 116 + . . scaffold507 TRF Tandem_Repeat 448471 448514 88 + . . scaffold507 GLEAN promoter 450046 451045 0.586166 + . ID=CGI_10019103; scaffold507 GLEAN mRNA 451046 451897 0.586166 + . ID=CGI_10019103; scaffold507 WUBlastX LINE_RTE-X 481308 481637 92 - . . scaffold507 WUBlastX LINE_CR1 485430 485831 148 + . . scaffold507 WUBlastX LINE_CR1 485861 486091 39 + . . scaffold507 WUBlastX DNA_Academ 489203 489376 62 + . . scaffold507 WUBlastX DNA_Academ 489470 489742 57 + . . scaffold507 TRF Tandem_Repeat 489937 490070 119 + . . scaffold507 WUBlastX DNA_Academ 490849 492042 460 + . . scaffold507 GLEAN promoter 491046 492045 0.51402 + . ID=CGI_10019104; scaffold507 WUBlastX DNA_Academ 491074 492339 405 + . . scaffold507 GLEAN promoter 491575 492574 0.26572 + . ID=CGI_10019105; scaffold507 GLEAN mRNA 492046 492426 0.51402 + . ID=CGI_10019104; scaffold507 WUBlastX DNA_Academ 492336 492542 35 + . . scaffold507 WUBlastX DNA_Academ 492548 493906 632 + . . scaffold507 GLEAN mRNA 492575 493705 0.26572 + . ID=CGI_10019105; scaffold507 WUBlastX DNA_Academ 493935 494021 34 + . . scaffold507 WUBlastX DNA_Academ 494023 494181 34 + . . scaffold507 TRF Tandem_Repeat 499818 499879 124 + . . scaffold507 TRF Tandem_Repeat 510764 510794 62 + . . scaffold507 TRF Tandem_Repeat 522828 522877 57 + . . scaffold507 TRF Tandem_Repeat 530012 531863 2440 + . . scaffold507 TRF Tandem_Repeat 536533 536613 153 + . . scaffold507 GLEAN mRNA 549945 550214 1 - . ID=CGI_10019106; scaffold507 GLEAN promoter 550215 551214 1 - . ID=CGI_10019106; scaffold507 TRF Tandem_Repeat 551945 551983 78 + . . scaffold507 GLEAN mRNA 564580 577253 1 - . ID=CGI_10019107; scaffold507 GLEAN promoter 577254 577412 1 - . ID=CGI_10019107; scaffold508 TRF Tandem_Repeat 4238 4269 64 + . . scaffold508 TRF Tandem_Repeat 4534 4642 84 + . . scaffold508 GLEAN mRNA 12073 17406 0.968836 - . ID=CGI_10011191; scaffold508 WUBlastX LTR_Gypsy 12280 13788 987 - . . scaffold508 WUBlastX LTR_Gypsy 15134 15850 221 - . . scaffold508 WUBlastX LTR_Gypsy 15350 15850 251 - . . scaffold508 WUBlastX LTR_Gypsy 15857 16240 99 - . . scaffold508 WUBlastX LTR_Gypsy 15869 16192 173 - . . scaffold508 WUBlastX LTR_Copia 16243 16338 20 - . . scaffold508 WUBlastX LTR_Gypsy 16291 17124 195 - . . scaffold508 WUBlastX LTR_Gypsy 16294 17358 80 - . . scaffold508 GLEAN promoter 17407 18406 0.968836 - . ID=CGI_10011191; scaffold508 GLEAN promoter 20502 21501 0.991878 + . ID=CGI_10011192; scaffold508 GLEAN mRNA 21502 38711 0.991878 + . ID=CGI_10011192; scaffold508 GLEAN mRNA 44653 45117 1 - . ID=CGI_10011193; scaffold508 GLEAN promoter 45118 46117 1 - . ID=CGI_10011193; scaffold508 TRF Tandem_Repeat 51574 51662 178 + . . scaffold508 GLEAN mRNA 62278 64011 0.999984 - . ID=CGI_10011194; scaffold508 GLEAN promoter 64012 65011 0.999984 - . ID=CGI_10011194; scaffold508 TRF Tandem_Repeat 73497 73831 212 + . . scaffold508 TRF Tandem_Repeat 75109 75254 145 + . . scaffold508 TRF Tandem_Repeat 75300 75420 113 + . . scaffold508 GLEAN mRNA 81096 89879 1 - . ID=CGI_10011195; scaffold508 GLEAN promoter 89880 90879 1 - . ID=CGI_10011195; scaffold508 TRF Tandem_Repeat 93860 93903 88 + . . scaffold508 WUBlastX LINE_RTE-X 98854 99189 41 + . . scaffold508 TRF Tandem_Repeat 99874 99911 53 + . . scaffold508 GLEAN mRNA 107572 116029 1 - . ID=CGI_10011196; scaffold508 GLEAN promoter 116030 117029 1 - . ID=CGI_10011196; scaffold508 TRF Tandem_Repeat 117295 118243 695 + . . scaffold508 TRF Tandem_Repeat 117329 118243 1362 + . . scaffold508 TRF Tandem_Repeat 117332 118243 1358 + . . scaffold508 TRF Tandem_Repeat 126528 127017 601 + . . scaffold508 TRF Tandem_Repeat 126529 127017 471 + . . scaffold508 GLEAN mRNA 129534 130915 0.726994 - . ID=CGI_10011197; scaffold508 GLEAN promoter 130916 131915 0.726994 - . ID=CGI_10011197; scaffold508 GLEAN promoter 132003 133002 1 + . ID=CGI_10011198; scaffold508 GLEAN mRNA 133003 134496 1 + . ID=CGI_10011198; scaffold508 GLEAN mRNA 136461 139128 0.651135 - . ID=CGI_10011199; scaffold508 GLEAN promoter 139129 140128 0.651135 - . ID=CGI_10011199; scaffold508 GLEAN mRNA 143632 151958 0.536138 - . ID=CGI_10011200; scaffold508 WUBlastX DNA_MuDR 151509 151895 42 - . . scaffold508 GLEAN promoter 151959 152958 0.536138 - . ID=CGI_10011200; scaffold508 WUBlastX LINE_RTE-X 153899 153937 30 - . . scaffold508 TRF Tandem_Repeat 165903 165942 80 + . . scaffold508 GLEAN mRNA 167248 167811 0.936033 - . ID=CGI_10011201; scaffold508 WUBlastX DNA_MuDR 167392 167778 42 - . . scaffold508 GLEAN promoter 167812 168811 0.936033 - . ID=CGI_10011201; scaffold508 WUBlastX LINE_RTE-X 169782 169820 30 - . . scaffold508 WUBlastX LINE_RTE-X 169912 170019 33 - . . scaffold508 WUBlastX LINE_RTE-X 170132 170557 40 - . . scaffold508 WUBlastX LINE_RTE-X 170402 170530 50 - . . scaffold508 GLEAN promoter 175824 176823 0.999068 + . ID=CGI_10011202; scaffold508 GLEAN mRNA 176824 177504 0.999068 + . ID=CGI_10011202; scaffold508 TRF Tandem_Repeat 180517 183210 3659 + . . scaffold508 TRF Tandem_Repeat 185880 186295 485 + . . scaffold508 GLEAN mRNA 192880 194584 0.980407 - . ID=CGI_10011203; scaffold508 GLEAN promoter 194585 195584 0.980407 - . ID=CGI_10011203; scaffold508 GLEAN mRNA 195130 202044 0.999994 - . ID=CGI_10011204; scaffold508 GLEAN promoter 202045 203044 0.999994 - . ID=CGI_10011204; scaffold508 WUBlastX LINE_CR1 215408 216001 100 - . . scaffold508 WUBlastX LINE_CR1 215498 215959 183 - . . scaffold508 WUBlastX LINE_L2 215643 216836 306 - . . scaffold508 WUBlastX LINE_CR1 215871 216932 890 - . . scaffold508 WUBlastX LINE_CR1 216947 218518 473 - . . scaffold508 WUBlastX LINE_CR1 218494 218571 41 - . . scaffold508 GLEAN promoter 219341 220340 0.999895 + . ID=CGI_10011205; scaffold508 GLEAN mRNA 220341 255087 0.999895 + . ID=CGI_10011205; scaffold508 TRF Tandem_Repeat 222286 222317 64 + . . scaffold508 TRF Tandem_Repeat 241298 241835 959 + . . scaffold508 TRF Tandem_Repeat 249559 249604 67 + . . scaffold508 TRF Tandem_Repeat 258026 258055 60 + . . scaffold508 TRF Tandem_Repeat 260895 260943 98 + . . scaffold508 GLEAN promoter 264767 265766 0.93507 + . ID=CGI_10011206; scaffold508 GLEAN mRNA 265767 280355 0.93507 + . ID=CGI_10011206; scaffold508 TRF Tandem_Repeat 267129 267172 88 + . . scaffold508 TRF Tandem_Repeat 269689 269795 63 + . . scaffold508 TRF Tandem_Repeat 269847 270493 156 + . . scaffold508 TRF Tandem_Repeat 269847 270499 162 + . . scaffold508 TRF Tandem_Repeat 269847 269925 56 + . . scaffold508 TRF Tandem_Repeat 269848 270531 289 + . . scaffold508 TRF Tandem_Repeat 269953 270353 70 + . . scaffold508 TRF Tandem_Repeat 273149 273192 88 + . . scaffold508 TRF Tandem_Repeat 274060 274107 87 + . . scaffold508 TRF Tandem_Repeat 275595 275625 53 + . . scaffold508 TRF Tandem_Repeat 279322 279376 92 + . . scaffold508 TRF Tandem_Repeat 279605 280207 523 + . . scaffold508 TRF Tandem_Repeat 280769 280850 164 + . . scaffold508 GLEAN mRNA 281043 281903 0.999999 - . ID=CGI_10011207; scaffold508 GLEAN promoter 281904 282903 0.999999 - . ID=CGI_10011207; scaffold509 GLEAN mRNA 496 19427 0.999716 - . ID=CGI_10018635; scaffold509 WUBlastX DNA_TcMar-Tc1 16959 17654 191 + . . scaffold509 WUBlastX DNA_TcMar-Tc1 17073 17654 355 + . . scaffold509 GLEAN promoter 19428 20427 0.999716 - . ID=CGI_10018635; scaffold509 GLEAN promoter 26531 27530 0.94715 + . ID=CGI_10018636; scaffold509 GLEAN mRNA 27531 28413 0.94715 + . ID=CGI_10018636; scaffold509 WUBlastX LTR_Gypsy 33763 33915 64 - . . scaffold509 WUBlastX LTR_Gypsy 33923 34084 77 - . . scaffold509 GLEAN mRNA 38063 52195 0.993276 - . ID=CGI_10018637; scaffold509 GLEAN promoter 52196 53195 0.993276 - . ID=CGI_10018637; scaffold509 TRF Tandem_Repeat 54531 55322 1151 + . . scaffold509 GLEAN mRNA 56462 67453 0.764061 - . ID=CGI_10018638; scaffold509 WUBlastX LINE_Penelope 61469 61666 64 - . . scaffold509 TRF Tandem_Repeat 62129 62287 192 + . . scaffold509 TRF Tandem_Repeat 64954 64998 90 + . . scaffold509 GLEAN promoter 67454 68453 0.764061 - . ID=CGI_10018638; scaffold509 TRF Tandem_Repeat 76351 76443 170 + . . scaffold509 GLEAN mRNA 76792 85099 0.999946 - . ID=CGI_10018639; scaffold509 GLEAN promoter 85100 86099 0.999946 - . ID=CGI_10018639; scaffold509 GLEAN mRNA 85689 86935 0.999675 - . ID=CGI_10018640; scaffold509 GLEAN promoter 86936 87935 0.999675 - . ID=CGI_10018640; scaffold509 GLEAN mRNA 89279 89641 1 - . ID=CGI_10018641; scaffold509 GLEAN promoter 89642 90641 1 - . ID=CGI_10018641; scaffold509 GLEAN mRNA 91758 98346 0.858612 - . ID=CGI_10018642; scaffold509 WUBlastX LTR_Ngaro 92550 93251 459 + . . scaffold509 WUBlastX LTR_Ngaro 92550 93392 442 + . . scaffold509 WUBlastX LTR_Ngaro 93259 93630 215 + . . scaffold509 WUBlastX LTR_Ngaro 93259 93717 166 + . . scaffold509 WUBlastX LTR_Ngaro 93631 93744 44 + . . scaffold509 TRF Tandem_Repeat 97313 97403 182 + . . scaffold509 GLEAN promoter 98347 99346 0.858612 - . ID=CGI_10018642; scaffold509 GLEAN mRNA 102995 108647 1 - . ID=CGI_10018643; scaffold509 GLEAN promoter 108648 109647 1 - . ID=CGI_10018643; scaffold509 TRF Tandem_Repeat 143639 143681 86 + . . scaffold509 TRF Tandem_Repeat 143803 143944 101 + . . scaffold509 TRF Tandem_Repeat 144553 144657 99 + . . scaffold509 TRF Tandem_Repeat 162790 162887 162 + . . scaffold509 GLEAN mRNA 180574 211213 0.998586 - . ID=CGI_10018644; scaffold509 WUBlastX LINE_RTE-BovB 206474 206647 41 - . . scaffold509 WUBlastX LINE_RTE-BovB 206501 206650 44 - . . scaffold509 WUBlastX LINE_RTE-BovB 206647 206808 54 - . . scaffold509 WUBlastX LINE_RTE-BovB 206650 206859 23 - . . scaffold509 GLEAN promoter 211214 212213 0.998586 - . ID=CGI_10018644; scaffold509 GLEAN mRNA 213157 217335 1 - . ID=CGI_10018645; scaffold509 GLEAN promoter 217336 218335 1 - . ID=CGI_10018645; scaffold509 GLEAN mRNA 233641 235047 0.82852 - . ID=CGI_10018646; scaffold509 GLEAN promoter 235048 236047 0.82852 - . ID=CGI_10018646; scaffold509 WUBlastX LINE_L2-Hydra 246749 247093 32 + . . scaffold509 WUBlastX LINE_L2-Hydra 247370 247789 22 + . . scaffold509 GLEAN promoter 252981 253980 0.999344 + . ID=CGI_10018647; scaffold509 GLEAN mRNA 253981 269937 0.999344 + . ID=CGI_10018647; scaffold509 WUBlastX LINE_L1-Tx1 256043 256222 59 + . . scaffold509 WUBlastX LINE_L1 256058 256195 80 + . . scaffold509 WUBlastX LINE_L1-Tx1 256249 256830 221 + . . scaffold509 WUBlastX LINE_L1-Tx1 256872 257288 84 + . . scaffold509 WUBlastX LINE_L1-Tx1 257204 257611 310 + . . scaffold509 WUBlastX LINE_L1-Tx1 257599 258042 241 + . . scaffold509 WUBlastX LINE_L1-Tx1 257975 258349 127 + . . scaffold509 WUBlastX LINE_L1 258276 258476 93 + . . scaffold509 WUBlastX LINE_L1 258279 258542 82 + . . scaffold509 WUBlastX LINE_L1-Tx1 258288 258599 78 + . . scaffold509 WUBlastX LINE_L1-Tx1 258622 259512 46 + . . scaffold509 TRF Tandem_Repeat 265776 265814 78 + . . scaffold509 TRF Tandem_Repeat 266052 266677 225 + . . scaffold509 TRF Tandem_Repeat 266206 266674 512 + . . scaffold509 TRF Tandem_Repeat 266677 266939 214 + . . scaffold509 TRF Tandem_Repeat 285556 285642 95 + . . scaffold509 TRF Tandem_Repeat 285728 285976 196 + . . scaffold509 TRF Tandem_Repeat 285729 285951 266 + . . scaffold509 TRF Tandem_Repeat 285976 286167 215 + . . scaffold509 WUBlastX LINE_RTE-BovB 287294 287470 99 - . . scaffold509 GLEAN promoter 293421 294420 0.999998 + . ID=CGI_10018648; scaffold509 GLEAN mRNA 294421 295533 0.999998 + . ID=CGI_10018648; scaffold509 TRF Tandem_Repeat 295717 295746 60 + . . scaffold509 TRF Tandem_Repeat 296384 296426 86 + . . scaffold509 TRF Tandem_Repeat 296739 296776 76 + . . scaffold509 TRF Tandem_Repeat 307483 307514 64 + . . scaffold509 TRF Tandem_Repeat 309521 309561 59 + . . scaffold509 WUBlastX LTR_Ngaro 313012 313179 58 - . . scaffold509 GLEAN mRNA 323794 339745 0.291364 - . ID=CGI_10018649; scaffold509 TRF Tandem_Repeat 334214 334263 100 + . . scaffold509 GLEAN promoter 335067 336066 0.380739 + . ID=CGI_10018650; scaffold509 GLEAN mRNA 336067 388621 0.380739 + . ID=CGI_10018650; scaffold509 GLEAN promoter 339746 340745 0.291364 - . ID=CGI_10018649; scaffold509 TRF Tandem_Repeat 357602 357736 227 + . . scaffold509 TRF Tandem_Repeat 367932 367978 94 + . . scaffold509 TRF Tandem_Repeat 370943 371321 415 + . . scaffold509 TRF Tandem_Repeat 392243 392302 120 + . . scaffold509 TRF Tandem_Repeat 392469 392502 59 + . . scaffold509 WUBlastX LINE_L2 393667 393915 64 - . . scaffold509 WUBlastX LINE_L2 393700 393960 33 - . . scaffold509 GLEAN mRNA 398287 401211 1 - . ID=CGI_10018651; scaffold509 TRF Tandem_Repeat 399487 399548 124 + . . scaffold509 GLEAN promoter 401212 402211 1 - . ID=CGI_10018651; scaffold509 GLEAN promoter 402659 403658 0.998203 + . ID=CGI_10018652; scaffold509 GLEAN mRNA 403659 407448 0.998203 + . ID=CGI_10018652; scaffold509 TRF Tandem_Repeat 405714 405796 62 + . . scaffold509 TRF Tandem_Repeat 405738 405844 88 + . . scaffold509 TRF Tandem_Repeat 409541 409594 74 + . . scaffold509 TRF Tandem_Repeat 411026 411927 1323 + . . scaffold509 GLEAN mRNA 415632 418018 1 - . ID=CGI_10018653; scaffold509 GLEAN promoter 417399 418398 1 + . ID=CGI_10018654; scaffold509 GLEAN promoter 418019 419018 1 - . ID=CGI_10018653; scaffold509 GLEAN mRNA 418399 432665 1 + . ID=CGI_10018654; scaffold509 TRF Tandem_Repeat 422750 422781 50 + . . scaffold509 TRF Tandem_Repeat 427862 427927 107 + . . scaffold509 TRF Tandem_Repeat 430897 430954 59 + . . scaffold509 TRF Tandem_Repeat 434166 434217 104 + . . scaffold509 TRF Tandem_Repeat 438067 438212 202 + . . scaffold509 GLEAN mRNA 438878 440322 1 - . ID=CGI_10018655; scaffold509 GLEAN promoter 440323 441322 1 - . ID=CGI_10018655; scaffold509 TRF Tandem_Repeat 441599 441655 114 + . . scaffold509 TRF Tandem_Repeat 442196 442262 116 + . . scaffold509 GLEAN promoter 442715 443714 1 + . ID=CGI_10018656; scaffold509 GLEAN mRNA 443715 444948 1 + . ID=CGI_10018656; scaffold509 WUBlastX LINE_L2 464587 465387 367 - . . scaffold509 WUBlastX LINE_CR1-L2 464605 465582 235 - . . scaffold509 WUBlastX LINE_CR1-L2 466303 466593 91 - . . scaffold509 GLEAN promoter 469482 470481 1 + . ID=CGI_10018657; scaffold509 GLEAN mRNA 470482 473117 1 + . ID=CGI_10018657; scaffold509 GLEAN mRNA 477417 494156 0.999675 - . ID=CGI_10018658; scaffold509 TRF Tandem_Repeat 481626 481686 113 + . . scaffold509 TRF Tandem_Repeat 485573 485786 142 + . . scaffold509 TRF Tandem_Repeat 490266 490305 53 + . . scaffold509 TRF Tandem_Repeat 491986 492019 59 + . . scaffold509 GLEAN promoter 493341 494340 1 + . ID=CGI_10018659; scaffold509 GLEAN promoter 494157 495156 0.999675 - . ID=CGI_10018658; scaffold509 GLEAN mRNA 494341 503657 1 + . ID=CGI_10018659; scaffold509 GLEAN mRNA 505904 514868 0.855565 - . ID=CGI_10018660; scaffold509 TRF Tandem_Repeat 511110 511146 74 + . . scaffold509 TRF Tandem_Repeat 512154 512198 90 + . . scaffold509 GLEAN promoter 514869 515868 0.855565 - . ID=CGI_10018660; scaffold509 GLEAN promoter 515554 516553 1 + . ID=CGI_10018661; scaffold509 TRF Tandem_Repeat 516294 516365 144 + . . scaffold509 GLEAN mRNA 516554 520285 1 + . ID=CGI_10018661; scaffold509 TRF Tandem_Repeat 517060 517147 167 + . . scaffold509 TRF Tandem_Repeat 517800 517824 50 + . . scaffold509 TRF Tandem_Repeat 520615 520649 52 + . . scaffold509 TRF Tandem_Repeat 521692 523089 1608 + . . scaffold509 GLEAN mRNA 525541 529203 0.999676 - . ID=CGI_10018662; scaffold509 TRF Tandem_Repeat 526708 526778 74 + . . scaffold509 TRF Tandem_Repeat 527992 528096 94 + . . scaffold509 GLEAN promoter 529204 530203 0.999676 - . ID=CGI_10018662; scaffold509 WUBlastX DNA_TcMar-Tc1 561247 562266 391 - . . scaffold510 TRF Tandem_Repeat 1620 1680 50 + . . scaffold510 TRF Tandem_Repeat 2347 2386 80 + . . scaffold510 TRF Tandem_Repeat 3423 3477 101 + . . scaffold510 TRF Tandem_Repeat 3677 3719 86 + . . scaffold510 TRF Tandem_Repeat 4809 4869 50 + . . scaffold510 TRF Tandem_Repeat 18415 18473 118 + . . scaffold510 GLEAN mRNA 26524 31170 0.641868 - . ID=CGI_10013762; scaffold510 TRF Tandem_Repeat 29445 29492 96 + . . scaffold510 TRF Tandem_Repeat 29817 29865 98 + . . scaffold510 GLEAN promoter 31171 32170 0.641868 - . ID=CGI_10013762; scaffold510 TRF Tandem_Repeat 32427 32467 82 + . . scaffold510 TRF Tandem_Repeat 36088 36118 55 + . . scaffold510 TRF Tandem_Repeat 39478 39544 89 + . . scaffold510 WUBlastX DNA_Maverick 40015 40335 207 - . . scaffold510 GLEAN mRNA 42277 42705 0.999995 - . ID=CGI_10013764; scaffold510 GLEAN promoter 42706 43705 0.999995 - . ID=CGI_10013764; scaffold510 GLEAN mRNA 52384 60496 0.999661 - . ID=CGI_10013765; scaffold510 GLEAN promoter 59689 60688 0.286351 + . ID=CGI_10013766; scaffold510 GLEAN promoter 60497 61496 0.999661 - . ID=CGI_10013765; scaffold510 GLEAN mRNA 60689 84499 0.286351 + . ID=CGI_10013766; scaffold510 TRF Tandem_Repeat 64349 64379 53 + . . scaffold510 TRF Tandem_Repeat 64379 64403 50 + . . scaffold510 TRF Tandem_Repeat 71028 71065 67 + . . scaffold510 TRF Tandem_Repeat 73087 73129 50 + . . scaffold510 TRF Tandem_Repeat 76333 76378 92 + . . scaffold510 TRF Tandem_Repeat 76445 76489 81 + . . scaffold510 TRF Tandem_Repeat 77948 77991 88 + . . scaffold510 GLEAN promoter 83539 84538 0.884235 + . ID=CGI_10013767; scaffold510 GLEAN mRNA 84539 89155 0.884235 + . ID=CGI_10013767; scaffold510 TRF Tandem_Repeat 90275 90299 50 + . . scaffold510 TRF Tandem_Repeat 91360 91400 82 + . . scaffold510 TRF Tandem_Repeat 92050 92094 56 + . . scaffold510 TRF Tandem_Repeat 92997 93043 94 + . . scaffold510 GLEAN promoter 93685 94684 0.403646 + . ID=CGI_10013768; scaffold510 GLEAN mRNA 94685 105677 0.403646 + . ID=CGI_10013768; scaffold510 TRF Tandem_Repeat 134513 134584 117 + . . scaffold510 TRF Tandem_Repeat 146879 146944 78 + . . scaffold510 TRF Tandem_Repeat 146879 146944 78 + . . scaffold510 TRF Tandem_Repeat 150734 150814 148 + . . scaffold510 TRF Tandem_Repeat 159293 159526 234 + . . scaffold510 TRF Tandem_Repeat 159293 159526 261 + . . scaffold510 TRF Tandem_Repeat 159317 159526 258 + . . scaffold510 GLEAN promoter 162291 163290 0.785549 + . ID=CGI_10013769; scaffold510 GLEAN mRNA 163291 175111 0.785549 + . ID=CGI_10013769; scaffold510 WUBlastX LTR_Ngaro 169019 169984 291 - . . scaffold510 WUBlastX LTR_Ngaro 169942 171501 981 - . . scaffold510 WUBlastX LTR_Ngaro 171524 172513 124 - . . scaffold510 TRF Tandem_Repeat 172797 172904 130 + . . scaffold510 WUBlastX LINE_Penelope 203042 203197 79 - . . scaffold510 WUBlastX LINE_Penelope 203141 203458 81 + . . scaffold510 WUBlastX LINE_Penelope 203171 203362 89 + . . scaffold510 GLEAN promoter 218167 219166 0.99935 + . ID=CGI_10013770; scaffold510 GLEAN mRNA 219167 237960 0.99935 + . ID=CGI_10013770; scaffold510 TRF Tandem_Repeat 240179 240342 168 + . . scaffold510 WUBlastX LTR_Ngaro 241154 241552 199 - . . scaffold510 WUBlastX LINE_L1-Tx1 249300 250361 247 - . . scaffold510 GLEAN promoter 270151 271150 0.650871 + . ID=CGI_10013771; scaffold510 GLEAN mRNA 271151 273234 0.650871 + . ID=CGI_10013771; scaffold510 WUBlastX DNA_IS4EU 272658 272858 74 + . . scaffold510 WUBlastX DNA_IS4EU 273528 273971 40 + . . scaffold510 WUBlastX DNA_Kolobok-IS4 273663 273974 111 + . . scaffold510 WUBlastX DNA_IS4EU 273693 274070 77 + . . scaffold510 WUBlastX DNA_hAT-hATw 275465 275857 43 - . . scaffold510 WUBlastX DNA_hAT-hATw 275842 276486 92 - . . scaffold510 TRF Tandem_Repeat 279138 279164 54 + . . scaffold510 TRF Tandem_Repeat 288514 288547 59 + . . scaffold510 TRF Tandem_Repeat 288823 288860 76 + . . scaffold510 TRF Tandem_Repeat 289002 289028 54 + . . scaffold510 WUBlastX LINE_RTE-X 290390 290827 33 + . . scaffold510 WUBlastX LINE_RTE-X 290396 290617 88 + . . scaffold510 WUBlastX LINE_RTE-X 290447 290638 98 + . . scaffold510 WUBlastX LINE_RTE-X 290486 290758 58 + . . scaffold510 WUBlastX DNA_hAT-hATw 295716 296096 58 - . . scaffold510 WUBlastX DNA_hAT-hATw 296099 296467 43 - . . scaffold510 WUBlastX DNA_hAT-hATw 296568 296615 25 - . . scaffold510 WUBlastX DNA_hAT-hATw 296620 297768 54 - . . scaffold510 WUBlastX DNA_hAT-hATw 296917 297765 55 - . . scaffold510 WUBlastX DNA_hAT-hATw 297058 297900 133 - . . scaffold510 WUBlastX LINE_L2 299284 299805 119 + . . scaffold510 TRF Tandem_Repeat 306473 306520 96 + . . scaffold510 TRF Tandem_Repeat 312326 312367 84 + . . scaffold510 TRF Tandem_Repeat 315926 315987 124 + . . scaffold510 TRF Tandem_Repeat 316067 316118 104 + . . scaffold510 WUBlastX LINE_RTE-BovB 320075 320275 58 - . . scaffold510 TRF Tandem_Repeat 320775 320830 112 + . . scaffold510 GLEAN mRNA 327373 331566 1 - . ID=CGI_10013772; scaffold510 TRF Tandem_Repeat 329184 329211 56 + . . scaffold510 GLEAN promoter 331567 332566 1 - . ID=CGI_10013772; scaffold510 TRF Tandem_Repeat 335636 335687 104 + . . scaffold510 GLEAN mRNA 338405 342891 1 - . ID=CGI_10013773; scaffold510 GLEAN promoter 342892 343891 1 - . ID=CGI_10013773; scaffold510 TRF Tandem_Repeat 344953 345058 203 + . . scaffold510 GLEAN mRNA 349134 350073 1 - . ID=CGI_10013774; scaffold510 GLEAN promoter 350074 351073 1 - . ID=CGI_10013774; scaffold510 GLEAN mRNA 352980 361330 0.999948 - . ID=CGI_10013775; scaffold510 WUBlastX LTR_DIRS 354817 355011 127 - . . scaffold510 WUBlastX LTR_DIRS 355060 355503 170 - . . scaffold510 GLEAN promoter 361331 362330 0.999948 - . ID=CGI_10013775; scaffold510 TRF Tandem_Repeat 361838 361907 63 + . . scaffold510 TRF Tandem_Repeat 362155 362241 63 + . . scaffold510 TRF Tandem_Repeat 362221 362339 139 + . . scaffold511 GLEAN promoter 1 852 0.998821 + . ID=CGI_10001110; scaffold511 GLEAN mRNA 853 14858 0.998821 + . ID=CGI_10001110; scaffold511 TRF Tandem_Repeat 10257 10298 84 + . . scaffold511 WUBlastX LINE_RTE-BovB 14892 15008 26 - . . scaffold511 WUBlastX LINE_RTE-BovB 14946 15008 42 - . . scaffold513 GLEAN promoter 1113 2112 0.917684 + . ID=CGI_10022134; scaffold513 GLEAN mRNA 2113 39536 0.917684 + . ID=CGI_10022134; scaffold513 TRF Tandem_Repeat 2929 2996 136 + . . scaffold513 WUBlastX LTR_Pao 9180 9332 41 + . . scaffold513 WUBlastX LTR_Pao 9573 10559 399 + . . scaffold513 WUBlastX LTR_Pao 9918 10640 418 + . . scaffold513 WUBlastX LTR_Pao 10642 11019 42 + . . scaffold513 WUBlastX LTR_Pao 10699 11019 79 + . . scaffold513 WUBlastX LTR_Pao 10884 11360 182 + . . scaffold513 WUBlastX LTR_Pao 11019 11354 247 + . . scaffold513 WUBlastX LTR_Pao 11025 11609 220 + . . scaffold513 WUBlastX LTR_Pao 11485 12846 881 + . . scaffold513 WUBlastX LTR_Pao 12229 12957 208 + . . scaffold513 WUBlastX LTR_Pao 12870 13070 178 + . . scaffold513 WUBlastX LTR_Pao 13064 13495 316 + . . scaffold513 GLEAN mRNA 16332 23197 1 - . ID=CGI_10022135; scaffold513 GLEAN promoter 23198 24197 1 - . ID=CGI_10022135; scaffold513 TRF Tandem_Repeat 27663 27760 187 + . . scaffold513 TRF Tandem_Repeat 33317 33342 52 + . . scaffold513 TRF Tandem_Repeat 35842 35872 62 + . . scaffold513 WUBlastX LTR_Pao 52685 52909 93 + . . scaffold513 WUBlastX LTR_Pao 52909 53544 590 + . . scaffold513 WUBlastX LTR_Pao 53544 54032 468 + . . scaffold513 WUBlastX LINE_CR1-L2 54119 54634 136 + . . scaffold513 GLEAN mRNA 66766 81093 0.940393 - . ID=CGI_10022136; scaffold513 GLEAN promoter 81094 82093 0.940393 - . ID=CGI_10022136; scaffold513 GLEAN mRNA 83394 94717 0.754729 - . ID=CGI_10022137; scaffold513 TRF Tandem_Repeat 83542 83581 53 + . . scaffold513 TRF Tandem_Repeat 86017 86051 52 + . . scaffold513 GLEAN promoter 94718 95717 0.754729 - . ID=CGI_10022137; scaffold513 TRF Tandem_Repeat 99163 99218 112 + . . scaffold513 WUBlastX LTR_Ngaro 107629 108240 187 + . . scaffold513 WUBlastX LTR_Ngaro 107734 108279 234 + . . scaffold513 TRF Tandem_Repeat 116662 116850 109 + . . scaffold513 TRF Tandem_Repeat 125127 125169 86 + . . scaffold513 WUBlastX LTR_Ngaro 147938 148111 84 - . . scaffold513 WUBlastX LTR_Ngaro 147941 148159 62 - . . scaffold513 GLEAN mRNA 149609 156857 0.819622 - . ID=CGI_10022138; scaffold513 WUBlastX DNA_Kolobok-IS4 155792 156529 371 + . . scaffold513 WUBlastX DNA_IS4EU 156684 156899 46 - . . scaffold513 WUBlastX DNA_IS4EU 156696 156875 71 - . . scaffold513 GLEAN promoter 156858 157857 0.819622 - . ID=CGI_10022138; scaffold513 WUBlastX DNA_IS4EU 156987 157124 77 - . . scaffold513 WUBlastX DNA_IS4EU 157047 157331 20 - . . scaffold513 WUBlastX DNA_IS4EU 157525 157662 21 - . . scaffold513 WUBlastX DNA_IS4EU 157872 158066 23 - . . scaffold513 WUBlastX DNA_IS4EU 157929 158030 30 - . . scaffold513 TRF Tandem_Repeat 161560 161606 94 + . . scaffold513 TRF Tandem_Repeat 161604 161638 52 + . . scaffold513 TRF Tandem_Repeat 162826 162983 262 + . . scaffold513 TRF Tandem_Repeat 163545 163882 487 + . . scaffold513 TRF Tandem_Repeat 167307 167348 50 + . . scaffold513 TRF Tandem_Repeat 170037 170162 116 + . . scaffold513 TRF Tandem_Repeat 170037 170162 130 + . . scaffold513 GLEAN promoter 182662 183661 0.999676 + . ID=CGI_10022139; scaffold513 GLEAN mRNA 183662 193573 0.999676 + . ID=CGI_10022139; scaffold513 TRF Tandem_Repeat 185101 185141 82 + . . scaffold513 TRF Tandem_Repeat 188670 188717 50 + . . scaffold513 GLEAN mRNA 194893 208540 1 - . ID=CGI_10022140; scaffold513 GLEAN promoter 208066 209065 1 + . ID=CGI_10022141; scaffold513 GLEAN promoter 208541 209540 1 - . ID=CGI_10022140; scaffold513 GLEAN mRNA 209066 214313 1 + . ID=CGI_10022141; scaffold513 GLEAN mRNA 216513 221452 0.991365 - . ID=CGI_10022142; scaffold513 GLEAN promoter 221453 222452 0.991365 - . ID=CGI_10022142; scaffold513 GLEAN mRNA 223251 231179 0.990784 - . ID=CGI_10022143; scaffold513 GLEAN promoter 231180 232179 0.990784 - . ID=CGI_10022143; scaffold513 GLEAN promoter 232312 233311 0.992512 + . ID=CGI_10022144; scaffold513 GLEAN mRNA 233312 239399 0.992512 + . ID=CGI_10022144; scaffold513 GLEAN mRNA 240465 244439 1 - . ID=CGI_10022145; scaffold513 GLEAN promoter 244440 245439 1 - . ID=CGI_10022145; scaffold513 GLEAN mRNA 266569 269894 1 - . ID=CGI_10022146; scaffold513 GLEAN promoter 269895 270894 1 - . ID=CGI_10022146; scaffold513 TRF Tandem_Repeat 273899 273964 55 + . . scaffold513 GLEAN mRNA 276962 284907 1 - . ID=CGI_10022147; scaffold513 TRF Tandem_Repeat 279959 280000 84 + . . scaffold513 TRF Tandem_Repeat 281236 281357 136 + . . scaffold513 GLEAN promoter 283452 284451 0.99956 + . ID=CGI_10022148; scaffold513 GLEAN mRNA 284452 305652 0.99956 + . ID=CGI_10022148; scaffold513 GLEAN promoter 284908 285907 1 - . ID=CGI_10022147; scaffold513 TRF Tandem_Repeat 292104 292133 60 + . . scaffold513 TRF Tandem_Repeat 314003 314052 100 + . . scaffold513 TRF Tandem_Repeat 317908 317939 64 + . . scaffold513 GLEAN mRNA 319744 320388 0.991247 - . ID=CGI_10022149; scaffold513 GLEAN promoter 320389 321388 0.991247 - . ID=CGI_10022149; scaffold513 TRF Tandem_Repeat 326922 326964 86 + . . scaffold513 TRF Tandem_Repeat 330387 330608 110 + . . scaffold513 TRF Tandem_Repeat 333738 334245 935 + . . scaffold513 TRF Tandem_Repeat 343249 343303 110 + . . scaffold513 GLEAN promoter 346116 347115 1 + . ID=CGI_10022150; scaffold513 GLEAN mRNA 347116 350581 1 + . ID=CGI_10022150; scaffold513 TRF Tandem_Repeat 350424 350448 50 + . . scaffold513 GLEAN promoter 354722 355721 0.999999 + . ID=CGI_10022151; scaffold513 GLEAN mRNA 355722 357536 0.999999 + . ID=CGI_10022151; scaffold513 WUBlastX LINE_L2 356184 356534 35 + . . scaffold513 WUBlastX LINE_L1 356307 356600 20 + . . scaffold513 TRF Tandem_Repeat 358634 358683 100 + . . scaffold513 TRF Tandem_Repeat 360397 360626 388 + . . scaffold513 TRF Tandem_Repeat 360407 360517 57 + . . scaffold513 GLEAN mRNA 361515 362605 0.998584 - . ID=CGI_10022152; scaffold513 GLEAN promoter 362257 363256 0.79116 + . ID=CGI_10022153; scaffold513 GLEAN promoter 362606 363605 0.998584 - . ID=CGI_10022152; scaffold513 GLEAN mRNA 363257 378497 0.79116 + . ID=CGI_10022153; scaffold513 TRF Tandem_Repeat 369141 369167 54 + . . scaffold513 WUBlastX DNA_Zator 370578 370682 21 + . . scaffold513 WUBlastX DNA_Zator 370872 371021 28 + . . scaffold513 TRF Tandem_Repeat 382504 382557 65 + . . scaffold513 GLEAN mRNA 383447 411968 0.949324 - . ID=CGI_10022154; scaffold513 TRF Tandem_Repeat 387601 387660 56 + . . scaffold513 TRF Tandem_Repeat 388770 389030 250 + . . scaffold513 TRF Tandem_Repeat 389072 389455 137 + . . scaffold513 TRF Tandem_Repeat 389215 389378 152 + . . scaffold513 TRF Tandem_Repeat 389459 389503 90 + . . scaffold513 TRF Tandem_Repeat 396075 396253 313 + . . scaffold513 TRF Tandem_Repeat 396947 397096 255 + . . scaffold513 GLEAN promoter 401255 402254 0.930881 + . ID=CGI_10022155; scaffold513 GLEAN mRNA 402255 413272 0.930881 + . ID=CGI_10022155; scaffold513 GLEAN promoter 411969 412968 0.949324 - . ID=CGI_10022154; scaffold513 GLEAN mRNA 413290 421257 0.99961 - . ID=CGI_10022156; scaffold513 TRF Tandem_Repeat 416800 416836 56 + . . scaffold513 GLEAN promoter 421258 422257 0.99961 - . ID=CGI_10022156; scaffold513 GLEAN promoter 422440 423439 0.931637 + . ID=CGI_10022157; scaffold513 GLEAN mRNA 423440 430875 0.931637 + . ID=CGI_10022157; scaffold513 GLEAN mRNA 433003 434557 0.986173 - . ID=CGI_10022158; scaffold513 GLEAN promoter 434558 435557 0.986173 - . ID=CGI_10022158; scaffold513 GLEAN mRNA 436536 449850 0.713855 - . ID=CGI_10022159; scaffold513 TRF Tandem_Repeat 437201 437371 164 + . . scaffold513 TRF Tandem_Repeat 437370 437538 126 + . . scaffold513 GLEAN promoter 449851 450850 0.713855 - . ID=CGI_10022159; scaffold513 TRF Tandem_Repeat 456003 456039 65 + . . scaffold513 GLEAN promoter 456259 457258 1 + . ID=CGI_10022160; scaffold513 GLEAN mRNA 457259 467142 1 + . ID=CGI_10022160; scaffold513 TRF Tandem_Repeat 461712 462635 1254 + . . scaffold513 TRF Tandem_Repeat 463974 464512 635 + . . scaffold513 GLEAN promoter 478485 479484 0.986678 + . ID=CGI_10022161; scaffold513 GLEAN mRNA 479485 500570 0.986678 + . ID=CGI_10022161; scaffold513 TRF Tandem_Repeat 490056 490143 56 + . . scaffold513 TRF Tandem_Repeat 501984 502036 106 + . . scaffold513 GLEAN mRNA 507908 530723 0.681827 - . ID=CGI_10022162; scaffold513 GLEAN promoter 517933 518932 0.99967 + . ID=CGI_10022163; scaffold513 GLEAN mRNA 518933 525963 0.99967 + . ID=CGI_10022163; scaffold513 TRF Tandem_Repeat 529982 530018 74 + . . scaffold513 GLEAN promoter 530724 531723 0.681827 - . ID=CGI_10022162; scaffold513 WUBlastX DNA_Sola 532654 533811 86 + . . scaffold513 WUBlastX DNA_Sola 533032 533811 106 + . . scaffold513 WUBlastX DNA_Sola 534131 534370 42 + . . scaffold513 GLEAN promoter 542360 543359 0.998931 + . ID=CGI_10022164; scaffold513 GLEAN mRNA 543360 546368 0.998931 + . ID=CGI_10022164; scaffold513 GLEAN promoter 550236 551235 0.740208 + . ID=CGI_10022165; scaffold513 GLEAN mRNA 551236 553099 0.740208 + . ID=CGI_10022165; scaffold513 TRF Tandem_Repeat 552716 552840 205 + . . scaffold513 GLEAN mRNA 553736 575726 0.998635 - . ID=CGI_10022166; scaffold513 TRF Tandem_Repeat 557733 558282 458 + . . scaffold513 TRF Tandem_Repeat 575386 575413 56 + . . scaffold513 GLEAN promoter 575727 576726 0.998635 - . ID=CGI_10022166; scaffold513 GLEAN promoter 579500 580499 1 + . ID=CGI_10022167; scaffold513 GLEAN mRNA 580500 581180 1 + . ID=CGI_10022167; scaffold513 GLEAN promoter 583431 584430 0.460844 + . ID=CGI_10022168; scaffold513 GLEAN mRNA 584431 589002 0.460844 + . ID=CGI_10022168; scaffold513 WUBlastX LINE_RTE-X 593714 594271 41 + . . scaffold513 WUBlastX LINE_Jockey 594215 594286 53 + . . scaffold513 TRF Tandem_Repeat 594985 595024 80 + . . scaffold513 TRF Tandem_Repeat 595453 595499 94 + . . scaffold513 GLEAN mRNA 597293 599859 1 - . ID=CGI_10022169; scaffold513 GLEAN promoter 599860 600859 1 - . ID=CGI_10022169; scaffold513 GLEAN promoter 600026 601025 0.99872 + . ID=CGI_10022170; scaffold513 GLEAN mRNA 601026 603412 0.99872 + . ID=CGI_10022170; scaffold513 GLEAN promoter 606269 607268 0.740332 + . ID=CGI_10022171; scaffold513 GLEAN mRNA 607269 607442 0.740332 + . ID=CGI_10022171; scaffold513 GLEAN mRNA 607462 607704 0.776794 - . ID=CGI_10022172; scaffold513 GLEAN promoter 607705 608704 0.776794 - . ID=CGI_10022172; scaffold513 GLEAN promoter 607875 608874 0.986475 + . ID=CGI_10022173; scaffold513 TRF Tandem_Repeat 608675 608748 148 + . . scaffold513 GLEAN mRNA 608875 610900 0.986475 + . ID=CGI_10022173; scaffold513 GLEAN promoter 611298 612297 0.934393 + . ID=CGI_10022174; scaffold513 GLEAN mRNA 612298 634694 0.934393 + . ID=CGI_10022174; scaffold513 TRF Tandem_Repeat 615945 615974 51 + . . scaffold513 TRF Tandem_Repeat 631424 631459 63 + . . scaffold513 TRF Tandem_Repeat 631738 631782 54 + . . scaffold513 TRF Tandem_Repeat 634844 634878 61 + . . scaffold513 GLEAN promoter 636238 637237 0.546677 + . ID=CGI_10022175; scaffold513 GLEAN mRNA 637238 637897 0.546677 + . ID=CGI_10022175; scaffold513 TRF Tandem_Repeat 638106 638168 126 + . . scaffold513 TRF Tandem_Repeat 667098 667180 61 + . . scaffold513 TRF Tandem_Repeat 667153 667353 393 + . . scaffold513 TRF Tandem_Repeat 682214 682477 341 + . . scaffold513 TRF Tandem_Repeat 682214 682441 122 + . . scaffold513 WUBlastX DNA_TcMar-Marin 704225 704299 28 - . . scaffold513 WUBlastX DNA_TcMar-Marin 704231 704314 27 - . . scaffold513 WUBlastX DNA_TcMar-Marin 704607 704855 82 - . . scaffold513 WUBlastX LINE_L2 706390 706455 20 - . . scaffold513 WUBlastX LINE_L2 706512 706784 29 - . . scaffold513 WUBlastX LINE_L2 706617 706778 78 - . . scaffold513 WUBlastX LINE_L2 706757 707041 105 - . . scaffold513 WUBlastX LINE_L2 707053 708177 488 - . . scaffold513 WUBlastX LINE_L2 708162 708413 62 - . . scaffold513 WUBlastX LINE_L2 708177 708371 83 - . . scaffold513 WUBlastX LINE_L1 708443 708547 35 - . . scaffold513 WUBlastX LINE_RTE-X 708571 708627 21 - . . scaffold513 TRF Tandem_Repeat 714603 714646 88 + . . scaffold513 TRF Tandem_Repeat 720063 720111 98 + . . scaffold514 TRF Tandem_Repeat 174 233 93 + . . scaffold514 TRF Tandem_Repeat 174 233 75 + . . scaffold514 WUBlastX LTR_Pao 243 431 92 + . . scaffold514 WUBlastX LTR_Pao 243 467 60 + . . scaffold514 WUBlastX LTR_Pao 410 556 43 + . . scaffold514 WUBlastX LTR_Pao 410 529 58 + . . scaffold514 WUBlastX LTR_Pao 544 594 21 + . . scaffold514 WUBlastX LTR_Pao 742 774 20 + . . scaffold514 WUBlastX LTR_Pao 816 1052 83 + . . scaffold514 WUBlastX LTR_Pao 894 1298 93 + . . scaffold514 WUBlastX LTR_Pao 1099 1668 57 + . . scaffold514 WUBlastX LTR_Pao 1105 1578 169 + . . scaffold514 WUBlastX LTR_Pao 2683 2799 50 + . . scaffold514 WUBlastX LTR_Pao 2792 3127 153 + . . scaffold514 WUBlastX LTR_Pao 2837 3121 159 + . . scaffold514 GLEAN promoter 10072 11071 0.999593 + . ID=CGI_10018343; scaffold514 GLEAN mRNA 11072 17578 0.999593 + . ID=CGI_10018343; scaffold514 TRF Tandem_Repeat 16266 16422 129 + . . scaffold514 GLEAN promoter 17625 18624 0.999944 + . ID=CGI_10018344; scaffold514 GLEAN mRNA 18625 29156 0.999944 + . ID=CGI_10018344; scaffold514 TRF Tandem_Repeat 22260 22756 165 + . . scaffold514 TRF Tandem_Repeat 22363 22763 283 + . . scaffold514 TRF Tandem_Repeat 25651 26642 1188 + . . scaffold514 TRF Tandem_Repeat 30542 30581 80 + . . scaffold514 GLEAN promoter 34853 35852 0.499589 + . ID=CGI_10018345; scaffold514 GLEAN mRNA 35853 70535 0.499589 + . ID=CGI_10018345; scaffold514 TRF Tandem_Repeat 54100 54128 58 + . . scaffold514 GLEAN mRNA 67103 122805 0.383041 - . ID=CGI_10018346; scaffold514 TRF Tandem_Repeat 74087 74432 529 + . . scaffold514 TRF Tandem_Repeat 74091 74432 585 + . . scaffold514 WUBlastX LTR_Gypsy 87698 87862 26 + . . scaffold514 WUBlastX LTR_Gypsy 87981 88757 76 + . . scaffold514 WUBlastX LTR_DIRS 88173 88757 399 + . . scaffold514 WUBlastX LTR_Gypsy 88753 88836 23 + . . scaffold514 WUBlastX LTR_DIRS 88778 89833 661 + . . scaffold514 WUBlastX LTR_DIRS 89716 90645 558 + . . scaffold514 TRF Tandem_Repeat 108940 109003 92 + . . scaffold514 TRF Tandem_Repeat 108943 109003 88 + . . scaffold514 TRF Tandem_Repeat 109755 109914 196 + . . scaffold514 GLEAN promoter 122806 123805 0.383041 - . ID=CGI_10018346; scaffold514 TRF Tandem_Repeat 129331 129502 196 + . . scaffold514 TRF Tandem_Repeat 141508 141553 58 + . . scaffold514 TRF Tandem_Repeat 146734 147272 871 + . . scaffold514 TRF Tandem_Repeat 148367 148423 105 + . . scaffold514 GLEAN promoter 168200 169199 0.998709 + . ID=CGI_10018347; scaffold514 GLEAN mRNA 169200 173051 0.998709 + . ID=CGI_10018347; scaffold514 TRF Tandem_Repeat 175793 175817 50 + . . scaffold514 GLEAN promoter 181742 182741 0.701147 + . ID=CGI_10018348; scaffold514 GLEAN mRNA 182742 191875 0.701147 + . ID=CGI_10018348; scaffold514 TRF Tandem_Repeat 186336 187091 505 + . . scaffold514 TRF Tandem_Repeat 190304 190336 66 + . . scaffold514 GLEAN promoter 191282 192281 0.768973 + . ID=CGI_10018349; scaffold514 TRF Tandem_Repeat 191442 191492 102 + . . scaffold514 GLEAN mRNA 192282 203775 0.768973 + . ID=CGI_10018349; scaffold514 TRF Tandem_Repeat 194056 194109 90 + . . scaffold514 TRF Tandem_Repeat 198311 198360 75 + . . scaffold514 TRF Tandem_Repeat 198312 198357 67 + . . scaffold514 TRF Tandem_Repeat 199797 200858 1390 + . . scaffold514 GLEAN promoter 203863 204862 0.999372 + . ID=CGI_10018351; scaffold514 GLEAN mRNA 204086 209585 0.544755 - . ID=CGI_10018350; scaffold514 GLEAN mRNA 204863 205060 0.999372 + . ID=CGI_10018351; scaffold514 GLEAN promoter 209586 210585 0.544755 - . ID=CGI_10018350; scaffold514 GLEAN mRNA 210230 216372 0.53639 - . ID=CGI_10018352; scaffold514 GLEAN promoter 216373 217372 0.53639 - . ID=CGI_10018352; scaffold514 GLEAN promoter 217786 218785 0.993358 + . ID=CGI_10018353; scaffold514 GLEAN mRNA 218786 226176 0.993358 + . ID=CGI_10018353; scaffold514 TRF Tandem_Repeat 220552 220592 82 + . . scaffold514 GLEAN mRNA 229270 229749 0.999661 - . ID=CGI_10018354; scaffold514 GLEAN promoter 229750 230749 0.999661 - . ID=CGI_10018354; scaffold514 TRF Tandem_Repeat 232779 232845 53 + . . scaffold514 TRF Tandem_Repeat 235127 235159 66 + . . scaffold514 TRF Tandem_Repeat 244341 244673 474 + . . scaffold514 TRF Tandem_Repeat 245881 245907 54 + . . scaffold514 WUBlastX DNA_hAT-Ac 249871 249999 30 - . . scaffold514 WUBlastX DNA_hAT-Ac 249998 250378 129 - . . scaffold514 WUBlastX DNA_hAT-Ac 250497 250577 35 - . . scaffold514 WUBlastX DNA_hAT-Ac 250503 250796 34 - . . scaffold514 TRF Tandem_Repeat 256548 256603 96 + . . scaffold514 TRF Tandem_Repeat 257068 257110 86 + . . scaffold514 WUBlastX LTR_Pao 264349 264660 96 + . . scaffold514 GLEAN mRNA 266744 277770 0.5 - . ID=CGI_10018355; scaffold514 TRF Tandem_Repeat 267232 267278 85 + . . scaffold514 GLEAN promoter 277771 278770 0.5 - . ID=CGI_10018355; scaffold514 TRF Tandem_Repeat 278213 278354 102 + . . scaffold514 GLEAN mRNA 279273 279494 0.999451 - . ID=CGI_10018356; scaffold514 GLEAN promoter 279495 280494 0.999451 - . ID=CGI_10018356; scaffold514 TRF Tandem_Repeat 281311 281342 50 + . . scaffold514 WUBlastX LTR_Gypsy 298106 298714 42 + . . scaffold514 WUBlastX LTR_Gypsy 298214 298789 149 + . . scaffold514 WUBlastX LTR_Gypsy 298763 298870 22 + . . scaffold514 WUBlastX LTR_Gypsy 298919 299188 22 + . . scaffold514 WUBlastX LTR_ERV1 298979 299215 24 + . . scaffold514 WUBlastX LTR_ERVK 299114 299206 44 + . . scaffold514 WUBlastX LTR_Gypsy-Cigr 299254 303012 1396 + . . scaffold514 WUBlastX LTR_Gypsy-Cigr 301750 303285 505 + . . scaffold514 WUBlastX LINE_CR1 304246 304569 23 + . . scaffold514 WUBlastX LTR_Gypsy-Cigr 315065 315931 236 + . . scaffold514 WUBlastX LTR_Gypsy 315068 315658 330 + . . scaffold514 GLEAN mRNA 317028 336513 0.855899 - . ID=CGI_10018357; scaffold514 TRF Tandem_Repeat 324510 324575 132 + . . scaffold514 TRF Tandem_Repeat 324705 324841 274 + . . scaffold514 TRF Tandem_Repeat 326189 326226 76 + . . scaffold514 GLEAN promoter 336514 337513 0.855899 - . ID=CGI_10018357; scaffold514 GLEAN mRNA 339555 343395 1 - . ID=CGI_10018358; scaffold514 GLEAN promoter 342754 343753 1 + . ID=CGI_10018359; scaffold514 GLEAN promoter 343396 344395 1 - . ID=CGI_10018358; scaffold514 GLEAN mRNA 343754 345985 1 + . ID=CGI_10018359; scaffold514 GLEAN mRNA 346264 348665 1 - . ID=CGI_10018360; scaffold514 GLEAN promoter 348666 349665 1 - . ID=CGI_10018360; scaffold514 TRF Tandem_Repeat 348972 349010 78 + . . scaffold514 GLEAN mRNA 349853 360853 0.999414 - . ID=CGI_10018361; scaffold514 GLEAN promoter 360854 361853 0.999414 - . ID=CGI_10018361; scaffold514 TRF Tandem_Repeat 361323 361569 356 + . . scaffold514 GLEAN promoter 383843 384842 0.971624 + . ID=CGI_10018362; scaffold514 TRF Tandem_Repeat 384553 384592 80 + . . scaffold514 GLEAN mRNA 384843 414611 0.971624 + . ID=CGI_10018362; scaffold514 TRF Tandem_Repeat 387099 387244 256 + . . scaffold514 TRF Tandem_Repeat 394692 394725 68 + . . scaffold514 TRF Tandem_Repeat 416839 416881 86 + . . scaffold514 GLEAN promoter 418266 419265 0.968772 + . ID=CGI_10018363; scaffold514 GLEAN mRNA 419266 420077 0.968772 + . ID=CGI_10018363; scaffold514 TRF Tandem_Repeat 421310 421368 118 + . . scaffold514 GLEAN promoter 428151 429150 0.993419 + . ID=CGI_10018364; scaffold514 GLEAN mRNA 429151 439589 0.993419 + . ID=CGI_10018364; scaffold514 GLEAN mRNA 444665 473776 0.661186 - . ID=CGI_10018365; scaffold514 TRF Tandem_Repeat 452039 452080 84 + . . scaffold514 WUBlastX LTR_Gypsy 455980 456426 109 - . . scaffold514 WUBlastX LTR_Gypsy 456049 456459 180 - . . scaffold514 WUBlastX LTR_Gypsy 456378 456866 390 - . . scaffold514 WUBlastX LTR_Gypsy 456420 456998 172 - . . scaffold514 WUBlastX LTR_Gypsy 457183 457326 29 - . . scaffold514 WUBlastX LTR_Gypsy 471605 471691 20 + . . scaffold514 WUBlastX LTR_Gypsy 471676 471915 53 + . . scaffold514 WUBlastX LTR_Gypsy 471715 471948 128 + . . scaffold514 WUBlastX LTR_Gypsy 471724 472077 103 + . . scaffold514 WUBlastX LTR_Gypsy 472194 472424 66 + . . scaffold514 WUBlastX LTR_Gypsy 472414 472674 59 + . . scaffold514 GLEAN promoter 473777 474776 0.661186 - . ID=CGI_10018365; scaffold514 TRF Tandem_Repeat 475898 475937 80 + . . scaffold514 TRF Tandem_Repeat 476254 476285 64 + . . scaffold514 TRF Tandem_Repeat 488422 488506 161 + . . scaffold514 TRF Tandem_Repeat 489756 489817 117 + . . scaffold514 GLEAN mRNA 491410 497630 1 - . ID=CGI_10018366; scaffold514 GLEAN promoter 494273 495272 0.992486 + . ID=CGI_10018367; scaffold514 GLEAN mRNA 495273 504194 0.992486 + . ID=CGI_10018367; scaffold514 GLEAN promoter 497631 498630 1 - . ID=CGI_10018366; scaffold514 TRF Tandem_Repeat 503241 503335 77 + . . scaffold514 TRF Tandem_Repeat 509303 509346 88 + . . scaffold514 GLEAN promoter 509357 510356 0.999999 + . ID=CGI_10018368; scaffold514 GLEAN mRNA 510357 518705 0.999999 + . ID=CGI_10018368; scaffold514 TRF Tandem_Repeat 515990 516022 66 + . . scaffold514 TRF Tandem_Repeat 518032 518087 103 + . . scaffold514 TRF Tandem_Repeat 520951 520997 67 + . . scaffold514 TRF Tandem_Repeat 527513 527574 88 + . . scaffold514 GLEAN mRNA 538157 544840 1 - . ID=CGI_10018369; scaffold514 GLEAN promoter 544841 545625 1 - . ID=CGI_10018369; scaffold515 WUBlastX LINE_RTE-X 2465 2671 47 - . . scaffold515 WUBlastX LINE_RTE-X 2732 3778 459 + . . scaffold516 TRF Tandem_Repeat 188 213 52 + . . scaffold516 GLEAN promoter 3375 4374 1 + . ID=CGI_10001541; scaffold516 GLEAN mRNA 4375 6736 1 + . ID=CGI_10001541; scaffold516 WUBlastX LINE_RTE-BovB 8373 8705 28 - . . scaffold516 WUBlastX LINE_RTE-BovB 8436 8945 434 - . . scaffold516 WUBlastX LINE_RTE-BovB 8463 9062 103 - . . scaffold516 WUBlastX LTR_DIRS 10182 10424 69 - . . scaffold516 TRF Tandem_Repeat 13285 13341 51 + . . scaffold516 TRF Tandem_Repeat 18648 18766 116 + . . scaffold517 WUBlastX LINE_L1 1986 2066 23 + . . scaffold517 WUBlastX LINE_L1 2245 2706 69 + . . scaffold517 WUBlastX LINE_L1-Tx1 2702 3403 211 + . . scaffold517 WUBlastX LINE_L1-Tx1 2825 3352 239 + . . scaffold517 WUBlastX LINE_L1 2930 3376 267 + . . scaffold517 WUBlastX LINE_L1-Tx1 3370 4686 210 + . . scaffold517 WUBlastX LINE_L1-Tx1 4105 4878 78 + . . scaffold517 GLEAN promoter 14448 15447 0.999372 + . ID=CGI_10008976; scaffold517 GLEAN mRNA 15448 15819 0.999372 + . ID=CGI_10008976; scaffold517 WUBlastX LTR_Gypsy 15499 15696 33 + . . scaffold517 WUBlastX DNA_P 22985 23239 48 + . . scaffold517 WUBlastX DNA_IS4EU 23410 24513 520 + . . scaffold517 WUBlastX DNA_IS4EU 24908 26416 284 - . . scaffold517 GLEAN promoter 25711 26710 0.883003 + . ID=CGI_10008977; scaffold517 GLEAN mRNA 26711 42046 0.883003 + . ID=CGI_10008977; scaffold517 WUBlastX LINE_Penelope 27745 28110 47 + . . scaffold517 WUBlastX LINE_Penelope 27835 28518 306 + . . scaffold517 TRF Tandem_Repeat 32542 32592 102 + . . scaffold517 TRF Tandem_Repeat 39240 39296 53 + . . scaffold517 TRF Tandem_Repeat 39240 39294 58 + . . scaffold517 TRF Tandem_Repeat 39243 39284 61 + . . scaffold517 WUBlastX DNA_Maverick 47037 47348 61 - . . scaffold517 WUBlastX DNA_Maverick 47304 47426 30 - . . scaffold517 TRF Tandem_Repeat 48278 48320 86 + . . scaffold517 GLEAN promoter 51439 52438 0.999863 + . ID=CGI_10008978; scaffold517 GLEAN mRNA 52439 53554 0.999863 + . ID=CGI_10008978; scaffold517 TRF Tandem_Repeat 52816 52875 120 + . . scaffold517 GLEAN promoter 61353 62352 0.992655 + . ID=CGI_10008979; scaffold517 GLEAN mRNA 62353 63898 0.992655 + . ID=CGI_10008979; scaffold517 TRF Tandem_Repeat 67231 67542 306 + . . scaffold517 TRF Tandem_Repeat 68115 68385 229 + . . scaffold517 TRF Tandem_Repeat 68124 68660 211 + . . scaffold517 TRF Tandem_Repeat 68371 68671 230 + . . scaffold517 GLEAN mRNA 73453 77622 0.557561 - . ID=CGI_10008980; scaffold517 TRF Tandem_Repeat 74133 74370 164 + . . scaffold517 TRF Tandem_Repeat 74193 74384 118 + . . scaffold517 GLEAN promoter 77623 78622 0.557561 - . ID=CGI_10008980; scaffold517 GLEAN mRNA 88022 95315 0.99675 - . ID=CGI_10008981; scaffold517 GLEAN promoter 95316 96315 0.99675 - . ID=CGI_10008981; scaffold517 GLEAN promoter 98851 99850 0.702384 + . ID=CGI_10008982; scaffold517 GLEAN mRNA 99851 110255 0.702384 + . ID=CGI_10008982; scaffold517 GLEAN promoter 113678 114677 0.435831 + . ID=CGI_10008983; scaffold517 GLEAN mRNA 114678 127389 0.435831 + . ID=CGI_10008983; scaffold517 TRF Tandem_Repeat 126754 126803 91 + . . scaffold517 TRF Tandem_Repeat 129309 129836 446 + . . scaffold517 TRF Tandem_Repeat 129309 129836 493 + . . scaffold517 TRF Tandem_Repeat 129309 129836 553 + . . scaffold517 TRF Tandem_Repeat 133818 133868 93 + . . scaffold517 TRF Tandem_Repeat 134628 134989 239 + . . scaffold517 TRF Tandem_Repeat 134661 134922 346 + . . scaffold517 TRF Tandem_Repeat 136369 136404 63 + . . scaffold517 TRF Tandem_Repeat 145197 145250 99 + . . scaffold517 TRF Tandem_Repeat 146039 146076 76 + . . scaffold517 TRF Tandem_Repeat 148555 148594 53 + . . scaffold517 WUBlastX LTR_DIRS 170894 171280 64 + . . scaffold517 WUBlastX LTR_DIRS 171442 171570 40 + . . scaffold517 WUBlastX LTR_Pao 176167 176337 30 + . . scaffold517 WUBlastX LTR_Pao 176778 178307 694 + . . scaffold517 WUBlastX LTR_Pao 177777 179060 465 + . . scaffold517 WUBlastX LTR_Pao 179060 179116 61 + . . scaffold517 WUBlastX LTR_Pao 179076 179612 345 + . . scaffold517 WUBlastX LTR_Pao 179088 179786 272 + . . scaffold517 WUBlastX LTR_Pao 179681 179896 146 + . . scaffold517 WUBlastX LTR_Pao 179922 180305 153 + . . scaffold517 TRF Tandem_Repeat 180306 182614 1215 + . . scaffold517 TRF Tandem_Repeat 180306 182358 1253 + . . scaffold517 TRF Tandem_Repeat 183296 183324 58 + . . scaffold517 TRF Tandem_Repeat 183687 183713 54 + . . scaffold517 TRF Tandem_Repeat 184916 185308 678 + . . scaffold517 TRF Tandem_Repeat 185304 186212 1500 + . . scaffold517 GLEAN promoter 187444 188443 0.541804 + . ID=CGI_10008984; scaffold517 GLEAN mRNA 188444 202746 0.541804 + . ID=CGI_10008984; scaffold517 WUBlastX DNA_Kolobok 191056 191277 51 + . . scaffold517 WUBlastX DNA_Kolobok 191411 191653 85 + . . scaffold517 WUBlastX DNA_Kolobok 192221 192526 80 + . . scaffold517 WUBlastX LINE_L1 199200 199403 21 - . . scaffold517 WUBlastX LINE_L1 199290 199436 46 - . . scaffold517 WUBlastX LINE_L1 199445 199699 58 - . . scaffold517 WUBlastX LINE_L1-Tx1 199771 200259 174 - . . scaffold517 WUBlastX LINE_L1 200099 200857 192 - . . scaffold517 WUBlastX LINE_L1-Tx1 200306 200857 349 - . . scaffold517 WUBlastX LINE_CR1 200528 200929 46 - . . scaffold517 WUBlastX LINE_L1-Tx1 201127 201213 22 - . . scaffold517 GLEAN mRNA 207961 216861 0.317127 - . ID=CGI_10008985; scaffold517 WUBlastX LINE_Penelope 209608 209781 33 - . . scaffold517 WUBlastX LINE_Penelope 209768 210058 38 - . . scaffold517 WUBlastX LINE_Penelope 209768 209971 81 - . . scaffold517 GLEAN promoter 213498 214497 0.999948 + . ID=CGI_10008987; scaffold517 GLEAN mRNA 214498 215338 0.999948 + . ID=CGI_10008987; scaffold517 GLEAN promoter 216862 217861 0.317127 - . ID=CGI_10008985; scaffold517 WUBlastX DNA_Maverick 216965 217234 85 + . . scaffold517 WUBlastX DNA_Maverick 216986 217210 108 + . . scaffold517 WUBlastX DNA_Maverick 217344 217430 47 + . . scaffold517 WUBlastX DNA_Maverick 217436 217741 90 + . . scaffold517 WUBlastX DNA_Maverick 218224 218937 225 - . . scaffold517 WUBlastX DNA_Maverick 218933 219193 65 - . . scaffold517 WUBlastX DNA_Maverick 219230 219619 89 - . . scaffold517 WUBlastX DNA_Maverick 219630 219827 20 - . . scaffold517 WUBlastX DNA_Maverick 219693 220226 67 - . . scaffold517 WUBlastX RC_Helitron 220967 221299 45 + . . scaffold518 WUBlastX LINE_L1 5597 6247 123 - . . scaffold520 TRF Tandem_Repeat 3359 3438 160 + . . scaffold520 TRF Tandem_Repeat 6009 6041 66 + . . scaffold520 TRF Tandem_Repeat 10073 10113 57 + . . scaffold520 GLEAN promoter 14206 15205 0.950913 + . ID=CGI_10010950; scaffold520 GLEAN mRNA 15206 16102 0.950913 + . ID=CGI_10010950; scaffold520 GLEAN promoter 24646 25645 0.984983 + . ID=CGI_10010951; scaffold520 WUBlastX LINE_L1 25547 26047 23 + . . scaffold520 WUBlastX LINE_L1-Tx1 25634 26200 62 + . . scaffold520 GLEAN mRNA 25646 27014 0.984983 + . ID=CGI_10010951; scaffold520 WUBlastX LTR_DIRS 27911 28711 92 - . . scaffold520 WUBlastX LTR_Gypsy-Cigr 28043 29659 721 - . . scaffold520 WUBlastX LTR_Gypsy 28055 29968 384 - . . scaffold520 WUBlastX LTR_Gypsy 29387 30142 21 - . . scaffold520 WUBlastX LTR_Copia 30154 30396 60 - . . scaffold520 WUBlastX LTR_Gypsy 30193 31101 79 - . . scaffold520 WUBlastX LTR_Gypsy 30514 31152 106 - . . scaffold520 WUBlastX LTR_Gypsy 41758 41898 59 - . . scaffold520 WUBlastX LTR_Ngaro 42840 43340 73 - . . scaffold520 WUBlastX LTR_Ngaro 42918 43271 131 - . . scaffold520 WUBlastX LINE_L1-Tx1 44668 45096 69 - . . scaffold520 WUBlastX LINE_L1-Tx1 44695 45369 25 - . . scaffold520 WUBlastX LINE_L1-Tx1 44740 45102 90 - . . scaffold520 WUBlastX LTR_Ngaro 46087 46494 38 - . . scaffold520 WUBlastX LTR_Ngaro 46165 46590 65 - . . scaffold520 WUBlastX LTR_Ngaro 46165 46518 99 - . . scaffold520 WUBlastX LTR_Gypsy 57977 60340 2107 - . . scaffold520 WUBlastX LTR_Gypsy 60128 60439 124 - . . scaffold520 WUBlastX LTR_Gypsy 60535 60630 21 - . . scaffold520 WUBlastX LTR_Gypsy 61424 61762 41 - . . scaffold520 WUBlastX LTR_Gypsy 61508 61828 152 - . . scaffold520 WUBlastX LTR_Gypsy 61532 61915 24 - . . scaffold520 WUBlastX LTR_Gypsy 61957 62874 99 - . . scaffold520 WUBlastX LTR_Gypsy 62158 62955 383 - . . scaffold520 TRF Tandem_Repeat 72999 73051 106 + . . scaffold520 TRF Tandem_Repeat 73114 73210 135 + . . scaffold520 TRF Tandem_Repeat 92487 92521 70 + . . scaffold520 TRF Tandem_Repeat 107085 107202 121 + . . scaffold520 TRF Tandem_Repeat 114613 114662 75 + . . scaffold520 TRF Tandem_Repeat 115044 115090 94 + . . scaffold520 WUBlastX LINE_Penelope 120094 121932 405 - . . scaffold520 WUBlastX LINE_Penelope 120361 121899 556 - . . scaffold520 WUBlastX LINE_Penelope 121789 122058 22 - . . scaffold520 WUBlastX LINE_Penelope 121816 121983 28 - . . scaffold520 GLEAN mRNA 122522 123166 1 - . ID=CGI_10010952; scaffold520 GLEAN promoter 123167 124166 1 - . ID=CGI_10010952; scaffold520 WUBlastX LINE_Penelope 123723 124493 158 - . . scaffold520 TRF Tandem_Repeat 131151 131203 106 + . . scaffold520 TRF Tandem_Repeat 131236 131269 59 + . . scaffold520 WUBlastX LINE_L2 132997 133335 208 + . . scaffold520 WUBlastX DNA_Merlin 143864 144232 47 + . . scaffold520 WUBlastX DNA_Merlin 143984 144286 42 + . . scaffold520 WUBlastX DNA_Merlin 144575 144967 167 + . . scaffold520 WUBlastX LTR_DIRS 145462 146388 396 - . . scaffold520 WUBlastX LTR_DIRS 146292 148358 766 - . . scaffold520 WUBlastX LTR_DIRS 146625 148310 1061 - . . scaffold520 WUBlastX LTR_Gypsy 148466 148678 20 - . . scaffold520 WUBlastX LTR_Gypsy 148595 148687 22 - . . scaffold520 WUBlastX LTR_Gypsy 149117 149344 21 - . . scaffold520 GLEAN promoter 149423 150422 0.985999 + . ID=CGI_10010954; scaffold520 GLEAN mRNA 149639 150148 0.999372 - . ID=CGI_10010953; scaffold520 GLEAN promoter 150149 151148 0.999372 - . ID=CGI_10010953; scaffold520 GLEAN mRNA 150423 151615 0.985999 + . ID=CGI_10010954; scaffold520 WUBlastX DNA_TcMar-Tc1 152570 153130 153 + . . scaffold520 WUBlastX DNA_TcMar-Tc1 152624 153367 65 + . . scaffold520 WUBlastX DNA_TcMar-Tc1 153261 153593 143 + . . scaffold520 GLEAN promoter 154699 155698 0.98619 + . ID=CGI_10010955; scaffold520 GLEAN mRNA 155699 161242 0.98619 + . ID=CGI_10010955; scaffold520 TRF Tandem_Repeat 156801 157451 759 + . . scaffold520 WUBlastX LTR_Ngaro 160063 160827 334 + . . scaffold520 WUBlastX LTR_DIRS 163353 163529 66 - . . scaffold520 WUBlastX LTR_DIRS 163510 163710 66 - . . scaffold520 WUBlastX LTR_DIRS 163543 163704 86 - . . scaffold520 WUBlastX LTR_DIRS 163718 164014 163 - . . scaffold520 TRF Tandem_Repeat 196440 196484 63 + . . scaffold520 GLEAN mRNA 201692 209584 0.38707 - . ID=CGI_10010956; scaffold520 GLEAN promoter 209585 210584 0.38707 - . ID=CGI_10010956; scaffold520 TRF Tandem_Repeat 209781 209818 67 + . . scaffold520 GLEAN mRNA 219152 227798 0.691149 - . ID=CGI_10010957; scaffold520 TRF Tandem_Repeat 220052 220087 63 + . . scaffold520 GLEAN promoter 227799 228798 0.691149 - . ID=CGI_10010957; scaffold520 TRF Tandem_Repeat 229173 229236 83 + . . scaffold520 TRF Tandem_Repeat 235347 236029 909 + . . scaffold520 TRF Tandem_Repeat 236034 236063 51 + . . scaffold520 WUBlastX DNA_MuDR 265545 266093 112 - . . scaffold520 GLEAN promoter 267997 268996 0.917942 + . ID=CGI_10010959; scaffold520 GLEAN mRNA 268338 268535 0.999372 - . ID=CGI_10010958; scaffold520 GLEAN promoter 268536 269535 0.999372 - . ID=CGI_10010958; scaffold520 GLEAN mRNA 268997 273270 0.917942 + . ID=CGI_10010959; scaffold520 WUBlastX DNA_Kolobok 271366 272700 88 + . . scaffold521 GLEAN promoter 109 1108 0.728449 + . ID=CGI_10009381; scaffold521 GLEAN mRNA 1109 6969 0.728449 + . ID=CGI_10009381; scaffold521 GLEAN promoter 12780 13779 0.998871 + . ID=CGI_10009382; scaffold521 GLEAN mRNA 13780 15444 0.998871 + . ID=CGI_10009382; scaffold521 GLEAN promoter 26785 27784 0.476335 + . ID=CGI_10009383; scaffold521 GLEAN mRNA 27785 28747 0.476335 + . ID=CGI_10009383; scaffold521 GLEAN mRNA 38898 72859 0.840523 - . ID=CGI_10009384; scaffold521 GLEAN promoter 72860 73859 0.840523 - . ID=CGI_10009384; scaffold521 GLEAN mRNA 74322 83279 0.993067 - . ID=CGI_10009385; scaffold521 GLEAN promoter 83280 84279 0.993067 - . ID=CGI_10009385; scaffold521 GLEAN promoter 91954 92953 0.994603 + . ID=CGI_10009386; scaffold521 GLEAN mRNA 92954 99426 0.994603 + . ID=CGI_10009386; scaffold521 GLEAN promoter 108014 109013 0.684374 + . ID=CGI_10009387; scaffold521 GLEAN mRNA 109014 132801 0.684374 + . ID=CGI_10009387; scaffold521 GLEAN mRNA 138459 143872 0.544162 - . ID=CGI_10009388; scaffold521 GLEAN promoter 143873 144872 0.544162 - . ID=CGI_10009388; scaffold521 GLEAN mRNA 144864 145376 0.999361 - . ID=CGI_10009389; scaffold521 GLEAN promoter 145377 146376 0.999361 - . ID=CGI_10009389; scaffold521 GLEAN mRNA 145717 146160 0.999365 - . ID=CGI_10009390; scaffold521 GLEAN promoter 146161 147160 0.999365 - . ID=CGI_10009390; scaffold521 GLEAN promoter 147534 148533 0.990444 + . ID=CGI_10009391; scaffold521 GLEAN mRNA 148534 175250 0.990444 + . ID=CGI_10009391; scaffold521 GLEAN promoter 174433 175432 0.999676 + . ID=CGI_10009392; scaffold521 GLEAN mRNA 175433 179784 0.999676 + . ID=CGI_10009392; scaffold521 GLEAN promoter 186101 187100 0.619496 + . ID=CGI_10009393; scaffold521 GLEAN mRNA 187101 205692 0.619496 + . ID=CGI_10009393; scaffold521 GLEAN mRNA 211432 218984 0.989205 - . ID=CGI_10009394; scaffold521 GLEAN promoter 218985 219984 0.989205 - . ID=CGI_10009394; scaffold521 GLEAN mRNA 220005 225820 0.791606 - . ID=CGI_10009395; scaffold521 GLEAN promoter 225821 226820 0.791606 - . ID=CGI_10009395; scaffold522 GLEAN promoter 1 351 1 + . ID=CGI_10020305; scaffold522 GLEAN mRNA 352 4521 1 + . ID=CGI_10020305; scaffold522 TRF Tandem_Repeat 1363 1451 153 + . . scaffold522 TRF Tandem_Repeat 2495 2522 56 + . . scaffold522 GLEAN mRNA 7248 11285 0.835619 - . ID=CGI_10020306; scaffold522 GLEAN promoter 11286 12285 0.835619 - . ID=CGI_10020306; scaffold522 TRF Tandem_Repeat 17573 17642 52 + . . scaffold522 WUBlastX LTR_Gypsy 18372 18755 24 + . . scaffold522 GLEAN promoter 21458 22457 0.999676 + . ID=CGI_10020307; scaffold522 TRF Tandem_Repeat 21797 21848 104 + . . scaffold522 GLEAN mRNA 22458 29258 0.999676 + . ID=CGI_10020307; scaffold522 TRF Tandem_Repeat 26328 26371 88 + . . scaffold522 TRF Tandem_Repeat 32603 32638 72 + . . scaffold522 GLEAN promoter 33803 34802 0.309989 + . ID=CGI_10020308; scaffold522 GLEAN mRNA 34803 47906 0.309989 + . ID=CGI_10020308; scaffold522 TRF Tandem_Repeat 44706 44759 108 + . . scaffold522 TRF Tandem_Repeat 50372 50439 127 + . . scaffold522 TRF Tandem_Repeat 52482 52519 76 + . . scaffold522 GLEAN mRNA 53634 54596 0.999981 - . ID=CGI_10020309; scaffold522 GLEAN promoter 54597 55596 0.999981 - . ID=CGI_10020309; scaffold522 TRF Tandem_Repeat 60370 60519 156 + . . scaffold522 TRF Tandem_Repeat 60603 60730 96 + . . scaffold522 GLEAN mRNA 64262 89748 0.997371 - . ID=CGI_10020310; scaffold522 TRF Tandem_Repeat 67825 68005 190 + . . scaffold522 TRF Tandem_Repeat 67846 68109 179 + . . scaffold522 GLEAN promoter 69134 70133 0.999349 + . ID=CGI_10020311; scaffold522 GLEAN mRNA 70134 83119 0.999349 + . ID=CGI_10020311; scaffold522 TRF Tandem_Repeat 76878 76921 79 + . . scaffold522 TRF Tandem_Repeat 79980 80009 60 + . . scaffold522 TRF Tandem_Repeat 84792 84928 127 + . . scaffold522 GLEAN promoter 89749 90748 0.997371 - . ID=CGI_10020310; scaffold522 GLEAN promoter 90583 91582 1 + . ID=CGI_10020312; scaffold522 GLEAN mRNA 91583 94915 1 + . ID=CGI_10020312; scaffold522 TRF Tandem_Repeat 97367 97411 90 + . . scaffold522 TRF Tandem_Repeat 97648 97697 100 + . . scaffold522 WUBlastX LINE_RTE-X 99838 100110 94 + . . scaffold522 WUBlastX LINE_RTE-X 99838 100227 73 + . . scaffold522 GLEAN mRNA 104017 120217 0.998107 - . ID=CGI_10020313; scaffold522 GLEAN promoter 120218 121217 0.998107 - . ID=CGI_10020313; scaffold522 TRF Tandem_Repeat 123324 123412 162 + . . scaffold522 GLEAN promoter 125348 126347 0.881471 + . ID=CGI_10020314; scaffold522 GLEAN mRNA 126348 135659 0.881471 + . ID=CGI_10020314; scaffold522 GLEAN mRNA 152831 167261 0.999866 - . ID=CGI_10020315; scaffold522 TRF Tandem_Repeat 158483 158653 170 + . . scaffold522 GLEAN promoter 167262 168261 0.999866 - . ID=CGI_10020315; scaffold522 GLEAN promoter 170193 171192 0.734544 + . ID=CGI_10020316; scaffold522 GLEAN mRNA 171193 173288 0.734544 + . ID=CGI_10020316; scaffold522 GLEAN mRNA 174346 175828 1 - . ID=CGI_10020317; scaffold522 GLEAN promoter 175729 176728 0.99999 + . ID=CGI_10020318; scaffold522 GLEAN promoter 175829 176828 1 - . ID=CGI_10020317; scaffold522 GLEAN mRNA 176729 185662 0.99999 + . ID=CGI_10020318; scaffold522 TRF Tandem_Repeat 180034 181878 2308 + . . scaffold522 GLEAN mRNA 186829 202753 0.862649 - . ID=CGI_10020319; scaffold522 TRF Tandem_Repeat 193372 193413 84 + . . scaffold522 GLEAN promoter 202754 203753 0.862649 - . ID=CGI_10020319; scaffold522 TRF Tandem_Repeat 216773 216806 68 + . . scaffold522 GLEAN promoter 219239 220238 0.999661 + . ID=CGI_10020320; scaffold522 TRF Tandem_Repeat 219874 219918 90 + . . scaffold522 GLEAN mRNA 220239 233086 0.999661 + . ID=CGI_10020320; scaffold522 TRF Tandem_Repeat 221750 221793 88 + . . scaffold522 WUBlastX LINE_RTE-X 223948 224364 34 + . . scaffold522 WUBlastX LINE_RTE-X 224017 224388 68 + . . scaffold522 WUBlastX LINE_RTE-X 224020 224229 74 + . . scaffold522 TRF Tandem_Repeat 227791 227868 156 + . . scaffold522 TRF Tandem_Repeat 227798 227906 76 + . . scaffold522 GLEAN mRNA 234266 234959 0.991582 - . ID=CGI_10020321; scaffold522 GLEAN promoter 234960 235959 0.991582 - . ID=CGI_10020321; scaffold522 GLEAN mRNA 242118 243211 0.999376 - . ID=CGI_10020322; scaffold522 GLEAN promoter 242657 243656 1 + . ID=CGI_10020323; scaffold522 GLEAN promoter 243212 244211 0.999376 - . ID=CGI_10020322; scaffold522 GLEAN mRNA 243657 252093 1 + . ID=CGI_10020323; scaffold522 GLEAN promoter 251509 252508 0.866473 + . ID=CGI_10020324; scaffold522 GLEAN mRNA 252509 261055 0.866473 + . ID=CGI_10020324; scaffold522 TRF Tandem_Repeat 258195 259449 1332 + . . scaffold522 TRF Tandem_Repeat 258195 258871 1175 + . . scaffold522 TRF Tandem_Repeat 258873 259449 1015 + . . scaffold522 GLEAN mRNA 265552 301871 0.988365 - . ID=CGI_10020325; scaffold522 TRF Tandem_Repeat 279834 279877 61 + . . scaffold522 TRF Tandem_Repeat 294911 294955 90 + . . scaffold522 TRF Tandem_Repeat 295574 295628 101 + . . scaffold522 TRF Tandem_Repeat 299729 300507 1328 + . . scaffold522 TRF Tandem_Repeat 300516 300559 61 + . . scaffold522 GLEAN promoter 301872 302871 0.988365 - . ID=CGI_10020325; scaffold522 TRF Tandem_Repeat 304834 304878 90 + . . scaffold522 TRF Tandem_Repeat 310528 310592 130 + . . scaffold522 TRF Tandem_Repeat 317177 317231 110 + . . scaffold522 TRF Tandem_Repeat 322142 322308 293 + . . scaffold522 GLEAN promoter 343407 344406 1 + . ID=CGI_10020326; scaffold522 GLEAN mRNA 344407 349396 1 + . ID=CGI_10020326; scaffold522 GLEAN mRNA 353330 368188 0.999949 - . ID=CGI_10020327; scaffold522 TRF Tandem_Repeat 359909 360040 119 + . . scaffold522 TRF Tandem_Repeat 361607 361684 52 + . . scaffold522 GLEAN promoter 368189 369188 0.999949 - . ID=CGI_10020327; scaffold522 GLEAN promoter 372063 373062 1 + . ID=CGI_10020328; scaffold522 GLEAN mRNA 373063 379963 1 + . ID=CGI_10020328; scaffold522 GLEAN mRNA 380678 382924 0.999998 - . ID=CGI_10020329; scaffold522 GLEAN promoter 382925 383924 0.999998 - . ID=CGI_10020329; scaffold522 TRF Tandem_Repeat 384932 385023 121 + . . scaffold522 WUBlastX LINE_CR1 387401 388594 169 + . . scaffold522 WUBlastX LINE_L2 387611 388951 715 + . . scaffold522 GLEAN promoter 391624 392623 0.999405 + . ID=CGI_10020330; scaffold522 GLEAN mRNA 392624 405679 0.999405 + . ID=CGI_10020330; scaffold522 TRF Tandem_Repeat 393754 393817 128 + . . scaffold522 GLEAN mRNA 410854 435933 0.890754 - . ID=CGI_10020331; scaffold522 TRF Tandem_Repeat 416539 416620 113 + . . scaffold522 TRF Tandem_Repeat 421198 421291 77 + . . scaffold522 TRF Tandem_Repeat 421207 421306 56 + . . scaffold522 TRF Tandem_Repeat 427939 428002 51 + . . scaffold522 TRF Tandem_Repeat 429072 429106 63 + . . scaffold522 TRF Tandem_Repeat 429155 429201 94 + . . scaffold522 GLEAN promoter 435934 436933 0.890754 - . ID=CGI_10020331; scaffold522 TRF Tandem_Repeat 461777 461850 139 + . . scaffold522 TRF Tandem_Repeat 469858 469924 134 + . . scaffold522 GLEAN promoter 471300 472299 0.761227 + . ID=CGI_10020332; scaffold522 TRF Tandem_Repeat 471312 471361 100 + . . scaffold522 GLEAN mRNA 472300 473694 0.761227 + . ID=CGI_10020332; scaffold522 TRF Tandem_Repeat 473548 473604 60 + . . scaffold522 TRF Tandem_Repeat 481462 481501 80 + . . scaffold522 GLEAN mRNA 485913 500338 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 489615 489831 163 + . . scaffold522 TRF Tandem_Repeat 489637 489831 354 + . . scaffold522 TRF Tandem_Repeat 489656 489821 98 + . . scaffold522 TRF Tandem_Repeat 490859 491007 289 + . . scaffold522 TRF Tandem_Repeat 490866 490997 93 + . . scaffold522 TRF Tandem_Repeat 490880 491035 136 + . . scaffold522 TRF Tandem_Repeat 493979 494015 65 + . . scaffold522 TRF Tandem_Repeat 496991 497406 447 + . . scaffold522 TRF Tandem_Repeat 497559 497842 301 + . . scaffold522 TRF Tandem_Repeat 498736 498797 124 + . . scaffold522 GLEAN promoter 500339 501338 0.995871 - . ID=CGI_10020333; scaffold522 TRF Tandem_Repeat 501056 501088 50 + . . scaffold522 GLEAN promoter 501818 502817 1 + . ID=CGI_10020334; scaffold522 GLEAN mRNA 502818 515696 1 + . ID=CGI_10020334; scaffold522 GLEAN promoter 522985 523984 0.992339 + . ID=CGI_10020335; scaffold522 TRF Tandem_Repeat 523192 523377 93 + . . scaffold522 TRF Tandem_Repeat 523197 523429 241 + . . scaffold522 TRF Tandem_Repeat 523197 523460 138 + . . scaffold522 GLEAN mRNA 523985 524920 0.992339 + . ID=CGI_10020335; scaffold522 TRF Tandem_Repeat 526582 526607 52 + . . scaffold522 GLEAN promoter 526833 527832 0.996199 + . ID=CGI_10020336; scaffold522 GLEAN mRNA 527833 532994 0.996199 + . ID=CGI_10020336; scaffold522 TRF Tandem_Repeat 533051 533102 104 + . . scaffold522 WUBlastX RC_Helitron 534878 535075 22 + . . scaffold522 WUBlastX RC_Helitron 534992 535501 26 + . . scaffold522 WUBlastX RC_Helitron 534992 535072 28 + . . scaffold522 WUBlastX RC_Helitron 535248 535712 67 + . . scaffold522 WUBlastX RC_Helitron 535615 535911 89 + . . scaffold522 WUBlastX RC_Helitron 535922 536542 265 + . . scaffold522 WUBlastX RC_Helitron 535937 536680 87 + . . scaffold522 WUBlastX RC_Helitron 536724 537038 97 + . . scaffold522 TRF Tandem_Repeat 537073 537118 92 + . . scaffold522 WUBlastX RC_Helitron 537272 537376 35 + . . scaffold522 WUBlastX RC_Helitron 537290 537493 44 + . . scaffold522 WUBlastX RC_Helitron 537296 537388 49 + . . scaffold522 TRF Tandem_Repeat 546082 546121 80 + . . scaffold522 GLEAN promoter 553141 554140 0.436995 + . ID=CGI_10020337; scaffold522 GLEAN mRNA 554141 555008 0.436995 + . ID=CGI_10020337; scaffold522 GLEAN promoter 554460 555459 0.999999 + . ID=CGI_10020338; scaffold522 GLEAN mRNA 555460 561290 0.999999 + . ID=CGI_10020338; scaffold522 WUBlastX LTR_Gypsy 555579 556106 45 - . . scaffold522 WUBlastX LTR_Gypsy 555724 556293 62 - . . scaffold522 WUBlastX LTR_Gypsy 555939 556103 90 - . . scaffold522 WUBlastX LTR_Gypsy 555972 556139 67 - . . scaffold522 WUBlastX LTR_Gypsy 555972 556106 93 - . . scaffold522 WUBlastX LTR_Gypsy 556174 556293 70 - . . scaffold522 WUBlastX LTR_Gypsy 556195 556488 119 - . . scaffold522 WUBlastX LTR_Gypsy 556303 556833 194 - . . scaffold522 WUBlastX LTR_Gypsy 556642 556986 172 - . . scaffold522 WUBlastX LTR_Gypsy 556711 557076 50 - . . scaffold522 WUBlastX LTR_Gypsy 557062 557181 44 - . . scaffold522 WUBlastX LTR_Gypsy 557135 557476 192 - . . scaffold522 WUBlastX LTR_Gypsy 557542 557715 40 - . . scaffold522 TRF Tandem_Repeat 561341 561407 134 + . . scaffold522 GLEAN mRNA 563499 570706 0.889789 - . ID=CGI_10020339; scaffold522 GLEAN promoter 570707 571706 0.889789 - . ID=CGI_10020339; scaffold522 TRF Tandem_Repeat 575236 575289 108 + . . scaffold522 GLEAN promoter 576339 577338 1 + . ID=CGI_10020340; scaffold522 GLEAN mRNA 577339 584841 1 + . ID=CGI_10020340; scaffold522 TRF Tandem_Repeat 580147 580183 74 + . . scaffold522 TRF Tandem_Repeat 592301 592413 63 + . . scaffold522 TRF Tandem_Repeat 592318 592415 92 + . . scaffold522 GLEAN mRNA 594773 598369 0.998058 - . ID=CGI_10020341; scaffold522 TRF Tandem_Repeat 595061 595094 68 + . . scaffold522 GLEAN promoter 598370 599369 0.998058 - . ID=CGI_10020341; scaffold522 GLEAN promoter 599725 600724 0.998821 + . ID=CGI_10020342; scaffold522 GLEAN mRNA 600725 603754 0.998821 + . ID=CGI_10020342; scaffold522 GLEAN mRNA 605462 612995 0.558019 - . ID=CGI_10020343; scaffold522 GLEAN promoter 611503 612502 1 + . ID=CGI_10020344; scaffold522 GLEAN mRNA 612503 617317 1 + . ID=CGI_10020344; scaffold522 TRF Tandem_Repeat 612811 612885 141 + . . scaffold522 GLEAN promoter 612996 613995 0.558019 - . ID=CGI_10020343; scaffold522 TRF Tandem_Repeat 615820 615854 70 + . . scaffold522 GLEAN promoter 620806 621805 1 + . ID=CGI_10020345; scaffold522 GLEAN mRNA 621806 630586 1 + . ID=CGI_10020345; scaffold522 GLEAN mRNA 631221 636088 0.999676 - . ID=CGI_10020346; scaffold522 GLEAN promoter 636089 637088 0.999676 - . ID=CGI_10020346; scaffold522 GLEAN promoter 636525 637524 0.721364 + . ID=CGI_10020347; scaffold522 GLEAN mRNA 637525 647489 0.721364 + . ID=CGI_10020347; scaffold522 TRF Tandem_Repeat 639394 639423 51 + . . scaffold522 TRF Tandem_Repeat 639927 639970 88 + . . scaffold523 WUBlastX LTR_Gypsy 810 1082 133 - . . scaffold523 WUBlastX LTR_Gypsy 810 1034 181 - . . scaffold524 TRF Tandem_Repeat 7710 7796 65 + . . scaffold524 TRF Tandem_Repeat 7743 7789 51 + . . scaffold524 WUBlastX LTR_Pao 8453 9277 721 + . . scaffold524 TRF Tandem_Repeat 18488 19183 447 + . . scaffold524 TRF Tandem_Repeat 20105 20129 50 + . . scaffold524 GLEAN promoter 24810 25809 0.999936 + . ID=CGI_10016596; scaffold524 TRF Tandem_Repeat 25003 25073 90 + . . scaffold524 GLEAN mRNA 25810 43323 0.999936 + . ID=CGI_10016596; scaffold524 WUBlastX DNA_Harbinger 51564 51788 53 - . . scaffold524 GLEAN mRNA 52982 53245 0.999451 - . ID=CGI_10016597; scaffold524 WUBlastX DNA_Academ 52988 53512 81 - . . scaffold524 WUBlastX DNA_Academ 53042 53467 181 - . . scaffold524 GLEAN promoter 53246 54245 0.999451 - . ID=CGI_10016597; scaffold524 WUBlastX DNA_hAT-Tip100 55005 55964 504 - . . scaffold524 WUBlastX DNA_hAT-Tip100 55951 56787 193 - . . scaffold524 WUBlastX DNA_hAT-Tip100 56020 56709 468 - . . scaffold524 WUBlastX DNA_hAT-Tip100 56747 57010 82 - . . scaffold524 GLEAN mRNA 75461 100375 0.53498 - . ID=CGI_10016598; scaffold524 WUBlastX DNA_Crypton 75683 75988 74 + . . scaffold524 TRF Tandem_Repeat 78576 78603 56 + . . scaffold524 TRF Tandem_Repeat 85917 85965 89 + . . scaffold524 TRF Tandem_Repeat 87553 87581 58 + . . scaffold524 GLEAN promoter 100376 101375 0.53498 - . ID=CGI_10016598; scaffold524 GLEAN mRNA 112534 121290 0.999995 - . ID=CGI_10016599; scaffold524 TRF Tandem_Repeat 116251 116308 116 + . . scaffold524 GLEAN promoter 121291 122290 0.999995 - . ID=CGI_10016599; scaffold524 TRF Tandem_Repeat 121418 122973 2237 + . . scaffold524 TRF Tandem_Repeat 135654 135912 133 + . . scaffold524 TRF Tandem_Repeat 135854 135989 138 + . . scaffold524 TRF Tandem_Repeat 135915 136097 138 + . . scaffold524 TRF Tandem_Repeat 136440 136563 90 + . . scaffold524 TRF Tandem_Repeat 136758 137501 361 + . . scaffold524 TRF Tandem_Repeat 136947 137169 257 + . . scaffold524 TRF Tandem_Repeat 137364 137518 121 + . . scaffold524 TRF Tandem_Repeat 137905 137960 53 + . . scaffold524 GLEAN promoter 138582 139581 1 + . ID=CGI_10016600; scaffold524 TRF Tandem_Repeat 138925 138965 82 + . . scaffold524 GLEAN mRNA 139582 154782 1 + . ID=CGI_10016600; scaffold524 TRF Tandem_Repeat 140821 140867 94 + . . scaffold524 TRF Tandem_Repeat 141463 141514 104 + . . scaffold524 GLEAN mRNA 154615 158749 0.623419 - . ID=CGI_10016601; scaffold524 TRF Tandem_Repeat 155131 155166 72 + . . scaffold524 TRF Tandem_Repeat 158413 158716 325 + . . scaffold524 TRF Tandem_Repeat 158413 158716 371 + . . scaffold524 GLEAN promoter 158750 159749 0.623419 - . ID=CGI_10016601; scaffold524 TRF Tandem_Repeat 159556 160334 389 + . . scaffold524 TRF Tandem_Repeat 159556 159915 288 + . . scaffold524 TRF Tandem_Repeat 159568 160334 521 + . . scaffold524 TRF Tandem_Repeat 160018 160334 412 + . . scaffold524 TRF Tandem_Repeat 163714 163738 50 + . . scaffold524 TRF Tandem_Repeat 169815 169864 100 + . . scaffold524 WUBlastX LINE_L2 184335 184736 90 + . . scaffold524 WUBlastX LINE_L1 184419 184748 121 + . . scaffold524 WUBlastX LINE_L1 184729 184926 75 + . . scaffold524 WUBlastX LINE_RTE-X 185014 185283 62 + . . scaffold524 WUBlastX LINE_RTE-X 185056 185349 83 + . . scaffold524 WUBlastX LINE_RTE-X 185404 185448 34 + . . scaffold524 WUBlastX LINE_RTE-X 185444 186118 52 + . . scaffold524 WUBlastX LINE_L2 186237 186536 37 + . . scaffold524 WUBlastX LINE_L2 186288 186656 62 + . . scaffold524 WUBlastX LINE_L1-Tx1 186312 186602 94 + . . scaffold524 WUBlastX LINE_L2 187282 188097 122 + . . scaffold524 WUBlastX LINE_RTE-X 187420 188532 418 + . . scaffold524 WUBlastX LINE_RTE-X 188071 188679 40 + . . scaffold524 WUBlastX LINE_RTE-X 188705 189019 89 + . . scaffold524 WUBlastX LINE_RTE-X 188729 189136 79 + . . scaffold524 WUBlastX DNA_IS4EU 191552 192094 303 + . . scaffold524 WUBlastX DNA_IS4EU 192468 192650 79 + . . scaffold524 WUBlastX DNA_IS4EU 193128 193691 122 + . . scaffold524 WUBlastX DNA_IS4EU 193188 193655 204 + . . scaffold524 WUBlastX DNA_IS4EU 193682 193864 79 + . . scaffold524 WUBlastX DNA_IS4EU 194307 195407 44 + . . scaffold524 WUBlastX DNA_IS4EU 194376 195191 80 + . . scaffold524 WUBlastX DNA_Kolobok-IS4 194505 195182 190 + . . scaffold524 WUBlastX LINE_L1 196950 197393 81 + . . scaffold524 WUBlastX LINE_L1-Tx1 197073 197486 192 + . . scaffold524 WUBlastX LINE_L1-Tx1 197073 197369 216 + . . scaffold524 TRF Tandem_Repeat 203546 203608 108 + . . scaffold524 TRF Tandem_Repeat 204784 204851 118 + . . scaffold524 WUBlastX DNA_TcMar-Marin 208144 208326 70 - . . scaffold524 TRF Tandem_Repeat 211253 211295 86 + . . scaffold524 TRF Tandem_Repeat 214754 214811 82 + . . scaffold524 TRF Tandem_Repeat 214754 214811 82 + . . scaffold524 TRF Tandem_Repeat 214766 214811 56 + . . scaffold524 TRF Tandem_Repeat 223190 223248 64 + . . scaffold524 TRF Tandem_Repeat 223199 223248 91 + . . scaffold524 TRF Tandem_Repeat 223418 224777 2201 + . . scaffold524 WUBlastX DNA_TcMar-Tc2 228567 229124 468 - . . scaffold524 GLEAN promoter 234214 235213 0.618186 + . ID=CGI_10016603; scaffold524 GLEAN mRNA 235214 235492 0.618186 + . ID=CGI_10016603; scaffold524 TRF Tandem_Repeat 236091 236147 69 + . . scaffold524 TRF Tandem_Repeat 236100 236159 75 + . . scaffold524 GLEAN promoter 236463 237462 0.999372 + . ID=CGI_10016604; scaffold524 GLEAN mRNA 237463 237684 0.999372 + . ID=CGI_10016604; scaffold524 GLEAN promoter 239271 240270 1 + . ID=CGI_10016605; scaffold524 GLEAN mRNA 240271 240528 1 + . ID=CGI_10016605; scaffold524 GLEAN mRNA 241978 255594 0.734579 - . ID=CGI_10016606; scaffold524 TRF Tandem_Repeat 244700 244789 94 + . . scaffold524 TRF Tandem_Repeat 244802 244840 51 + . . scaffold524 WUBlastX RC_Helitron 250873 251538 86 - . . scaffold524 WUBlastX DNA_Helitron 251008 251556 116 - . . scaffold524 GLEAN promoter 255595 256594 0.734579 - . ID=CGI_10016606; scaffold524 TRF Tandem_Repeat 263262 263308 67 + . . scaffold524 TRF Tandem_Repeat 267550 268240 696 + . . scaffold524 TRF Tandem_Repeat 269237 270531 1810 + . . scaffold524 TRF Tandem_Repeat 270562 270629 100 + . . scaffold524 WUBlastX DNA_TcMar-Tc1 272418 272891 109 + . . scaffold524 WUBlastX DNA_TcMar-Tc1 272433 273023 102 + . . scaffold524 WUBlastX DNA_TcMar-Tc1 272915 273118 77 + . . scaffold524 WUBlastX DNA_TcMar-Tc1 272978 273160 28 + . . scaffold524 WUBlastX DNA_TcMar-Tc1 276086 276286 79 + . . scaffold524 WUBlastX DNA_TcMar-Tc1 276256 276447 74 + . . scaffold524 TRF Tandem_Repeat 277730 277771 84 + . . scaffold524 TRF Tandem_Repeat 291519 291553 63 + . . scaffold524 TRF Tandem_Repeat 297995 298054 120 + . . scaffold524 WUBlastX DNA_hAT-Blackja 310961 311137 39 - . . scaffold524 TRF Tandem_Repeat 311480 312515 1581 + . . scaffold524 GLEAN mRNA 319970 320328 0.742708 - . ID=CGI_10016607; scaffold524 GLEAN promoter 320329 321328 0.742708 - . ID=CGI_10016607; scaffold524 TRF Tandem_Repeat 330723 331268 693 + . . scaffold524 TRF Tandem_Repeat 335065 335111 85 + . . scaffold524 TRF Tandem_Repeat 347828 347875 60 + . . scaffold524 TRF Tandem_Repeat 348065 348379 200 + . . scaffold524 TRF Tandem_Repeat 348094 348420 288 + . . scaffold524 TRF Tandem_Repeat 348121 348386 346 + . . scaffold524 TRF Tandem_Repeat 376293 376467 192 + . . scaffold524 TRF Tandem_Repeat 378927 378980 108 + . . scaffold524 TRF Tandem_Repeat 382243 382302 120 + . . scaffold524 TRF Tandem_Repeat 382415 382448 68 + . . scaffold524 WUBlastX DNA_Harbinger 387950 388111 50 + . . scaffold524 WUBlastX DNA_Harbinger 387990 388367 108 + . . scaffold524 WUBlastX DNA_Harbinger 388059 388457 156 + . . scaffold524 WUBlastX DNA_Maverick 400389 400565 30 + . . scaffold524 WUBlastX DNA_Maverick 400666 402060 190 + . . scaffold524 WUBlastX DNA_Maverick 401542 402051 238 + . . scaffold524 WUBlastX DNA_Maverick 401596 402024 258 + . . scaffold524 WUBlastX DNA_Maverick 401929 402771 229 + . . scaffold524 WUBlastX DNA_Maverick 402549 403001 303 + . . scaffold524 WUBlastX DNA_Maverick 402549 403085 300 + . . scaffold524 GLEAN promoter 407022 408021 1 + . ID=CGI_10016608; scaffold524 GLEAN mRNA 408022 413966 1 + . ID=CGI_10016608; scaffold524 GLEAN mRNA 416926 422163 0.955953 - . ID=CGI_10016609; scaffold524 GLEAN promoter 422164 423163 0.955953 - . ID=CGI_10016609; scaffold524 GLEAN mRNA 422177 430797 0.758733 - . ID=CGI_10016610; scaffold524 GLEAN promoter 430634 431633 1 + . ID=CGI_10016611; scaffold524 GLEAN promoter 430798 431797 0.758733 - . ID=CGI_10016610; scaffold524 GLEAN mRNA 431634 439463 1 + . ID=CGI_10016611; scaffold524 TRF Tandem_Repeat 444293 444333 75 + . . scaffold524 GLEAN promoter 444295 445294 1 + . ID=CGI_10016612; scaffold524 GLEAN mRNA 445295 466161 1 + . ID=CGI_10016612; scaffold524 WUBlastX LINE_L2 450511 450819 133 - . . scaffold524 WUBlastX LINE_L2 450511 451125 38 - . . scaffold524 WUBlastX LINE_L2 450514 451032 46 - . . scaffold524 WUBlastX LINE_CR1-L2 453245 453556 148 - . . scaffold524 WUBlastX LINE_CR1-L2 453532 453888 153 - . . scaffold524 WUBlastX LINE_CR1 453580 453951 39 - . . scaffold524 WUBlastX LINE_CR1-L2 453923 453973 21 - . . scaffold524 TRF Tandem_Repeat 468203 468276 148 + . . scaffold525 TRF Tandem_Repeat 11249 11303 74 + . . scaffold525 TRF Tandem_Repeat 14381 15170 1095 + . . scaffold525 TRF Tandem_Repeat 26294 27455 1638 + . . scaffold525 WUBlastX DNA_PiggyBac 31618 31884 25 + . . scaffold525 TRF Tandem_Repeat 36742 36775 59 + . . scaffold525 WUBlastX LINE_L1-Tx1 47389 48579 443 - . . scaffold525 WUBlastX LINE_L1-Tx1 48543 48929 291 - . . scaffold525 WUBlastX LINE_L1 48564 49010 41 - . . scaffold525 WUBlastX LINE_L1 50308 50532 67 - . . scaffold525 WUBlastX LINE_L1-Tx1 50365 50532 79 - . . scaffold525 TRF Tandem_Repeat 55000 55039 80 + . . scaffold525 TRF Tandem_Repeat 55421 55469 73 + . . scaffold525 GLEAN promoter 57067 58066 0.665804 + . ID=CGI_10008573; scaffold525 GLEAN mRNA 58067 60404 0.665804 + . ID=CGI_10008573; scaffold525 WUBlastX DNA_IS4EU 58891 59064 23 + . . scaffold525 WUBlastX DNA_IS4EU 58957 59064 33 + . . scaffold525 WUBlastX DNA_Kolobok-IS4 59853 60392 269 + . . scaffold525 WUBlastX DNA_IS4EU 60641 60832 56 - . . scaffold525 WUBlastX DNA_IS4EU 60665 60862 34 - . . scaffold525 WUBlastX DNA_IS4EU 61034 61225 53 - . . scaffold525 WUBlastX DNA_IS4EU 61058 61255 32 - . . scaffold525 WUBlastX DNA_Kolobok-IS4 62141 62275 33 - . . scaffold525 WUBlastX DNA_IS4EU 62627 62713 20 - . . scaffold525 WUBlastX DNA_IS4EU 62867 63034 20 - . . scaffold525 WUBlastX DNA_IS4EU 62927 63112 42 - . . scaffold525 WUBlastX DNA_IS4EU 62930 63040 47 - . . scaffold525 TRF Tandem_Repeat 73984 75171 1810 + . . scaffold525 TRF Tandem_Repeat 96479 96566 70 + . . scaffold525 GLEAN promoter 107266 108265 1 + . ID=CGI_10008574; scaffold525 GLEAN mRNA 108266 111002 1 + . ID=CGI_10008574; scaffold525 TRF Tandem_Repeat 114337 114737 332 + . . scaffold525 TRF Tandem_Repeat 114435 114675 140 + . . scaffold525 TRF Tandem_Repeat 114466 114737 159 + . . scaffold525 TRF Tandem_Repeat 114501 114738 162 + . . scaffold525 TRF Tandem_Repeat 117851 118129 229 + . . scaffold525 GLEAN mRNA 146699 175472 0.279546 - . ID=CGI_10008575; scaffold525 TRF Tandem_Repeat 156860 156900 59 + . . scaffold525 TRF Tandem_Repeat 165519 165552 59 + . . scaffold525 TRF Tandem_Repeat 168400 168436 74 + . . scaffold525 WUBlastX LINE_L2 172936 173283 247 - . . scaffold525 GLEAN promoter 175473 176472 0.279546 - . ID=CGI_10008575; scaffold525 GLEAN promoter 177983 178982 0.999372 + . ID=CGI_10008576; scaffold525 TRF Tandem_Repeat 178028 178366 351 + . . scaffold525 TRF Tandem_Repeat 178028 178366 368 + . . scaffold525 TRF Tandem_Repeat 178028 178366 415 + . . scaffold525 GLEAN mRNA 178983 179177 0.999372 + . ID=CGI_10008576; scaffold525 WUBlastX DNA_Harbinger 181507 181899 164 - . . scaffold525 WUBlastX DNA_Harbinger 182075 182158 25 - . . scaffold525 WUBlastX DNA_Harbinger 182537 182671 118 - . . scaffold525 WUBlastX LTR_Copia 188958 189413 345 - . . scaffold525 WUBlastX LTR_Copia 189421 191058 937 - . . scaffold525 WUBlastX LINE_RTE-X 193320 194837 174 - . . scaffold525 WUBlastX LINE_RTE-X 193704 194942 204 - . . scaffold525 WUBlastX LINE_RTE-X 193863 194846 257 - . . scaffold525 WUBlastX LINE_Jockey 194897 196045 196 - . . scaffold525 WUBlastX LINE_Proto2 194909 196711 185 - . . scaffold525 WUBlastX LINE_L1 196992 197105 23 - . . scaffold527 TRF Tandem_Repeat 7084 7131 51 + . . scaffold527 TRF Tandem_Repeat 7087 7131 72 + . . scaffold527 TRF Tandem_Repeat 7234 8022 1088 + . . scaffold527 GLEAN promoter 15021 16020 0.586745 + . ID=CGI_10015975; scaffold527 GLEAN mRNA 16021 57261 0.586745 + . ID=CGI_10015975; scaffold527 TRF Tandem_Repeat 23066 24025 1277 + . . scaffold527 TRF Tandem_Repeat 35033 35118 140 + . . scaffold527 TRF Tandem_Repeat 37265 38044 895 + . . scaffold527 GLEAN mRNA 58814 61649 0.889764 - . ID=CGI_10015976; scaffold527 GLEAN promoter 61650 62649 0.889764 - . ID=CGI_10015976; scaffold527 TRF Tandem_Repeat 63509 63557 98 + . . scaffold527 TRF Tandem_Repeat 64066 64100 70 + . . scaffold527 TRF Tandem_Repeat 67714 67751 76 + . . scaffold527 TRF Tandem_Repeat 70331 70375 74 + . . scaffold527 WUBlastX LINE_CR1-L2 79112 79711 122 + . . scaffold527 WUBlastX LINE_L2 79265 79729 148 + . . scaffold527 TRF Tandem_Repeat 102591 102641 93 + . . scaffold527 TRF Tandem_Repeat 113058 113088 62 + . . scaffold527 TRF Tandem_Repeat 116251 116276 52 + . . scaffold527 GLEAN mRNA 117805 118161 0.999999 - . ID=CGI_10015977; scaffold527 GLEAN promoter 118162 119161 0.999999 - . ID=CGI_10015977; scaffold527 TRF Tandem_Repeat 118208 118467 315 + . . scaffold527 TRF Tandem_Repeat 118235 118493 305 + . . scaffold527 GLEAN mRNA 118527 155783 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 119714 119872 282 + . . scaffold527 TRF Tandem_Repeat 123205 123239 70 + . . scaffold527 TRF Tandem_Repeat 136829 137214 677 + . . scaffold527 TRF Tandem_Repeat 145425 145649 378 + . . scaffold527 TRF Tandem_Repeat 148905 148974 122 + . . scaffold527 TRF Tandem_Repeat 149177 149202 52 + . . scaffold527 TRF Tandem_Repeat 151789 151829 82 + . . scaffold527 GLEAN promoter 155784 156783 0.86373 - . ID=CGI_10015978; scaffold527 TRF Tandem_Repeat 156795 156836 66 + . . scaffold527 TRF Tandem_Repeat 157549 157587 62 + . . scaffold527 TRF Tandem_Repeat 158610 158682 137 + . . scaffold527 TRF Tandem_Repeat 159321 159407 120 + . . scaffold527 TRF Tandem_Repeat 159373 159434 79 + . . scaffold527 TRF Tandem_Repeat 162813 162853 75 + . . scaffold527 GLEAN promoter 169256 170255 1 + . ID=CGI_10015979; scaffold527 GLEAN mRNA 170256 176083 1 + . ID=CGI_10015979; scaffold527 TRF Tandem_Repeat 173990 174050 50 + . . scaffold527 TRF Tandem_Repeat 175086 175137 61 + . . scaffold527 TRF Tandem_Repeat 181801 181860 120 + . . scaffold527 TRF Tandem_Repeat 183268 183305 76 + . . scaffold527 GLEAN promoter 187299 188298 0.597187 + . ID=CGI_10015980; scaffold527 GLEAN mRNA 188299 211321 0.597187 + . ID=CGI_10015980; scaffold527 TRF Tandem_Repeat 211588 211796 134 + . . scaffold527 TRF Tandem_Repeat 214160 214200 64 + . . scaffold527 TRF Tandem_Repeat 214652 214759 65 + . . scaffold527 TRF Tandem_Repeat 219552 219647 93 + . . scaffold527 GLEAN promoter 220972 221971 0.789796 + . ID=CGI_10015981; scaffold527 GLEAN mRNA 221972 236003 0.789796 + . ID=CGI_10015981; scaffold527 TRF Tandem_Repeat 238432 238481 57 + . . scaffold527 TRF Tandem_Repeat 238872 238919 96 + . . scaffold527 TRF Tandem_Repeat 239019 239082 128 + . . scaffold527 TRF Tandem_Repeat 240502 240554 61 + . . scaffold527 TRF Tandem_Repeat 266802 266896 181 + . . scaffold527 WUBlastX DNA_Maverick 267383 267667 73 - . . scaffold527 WUBlastX DNA_Maverick 267455 267694 100 - . . scaffold527 WUBlastX DNA_Maverick 267470 267664 108 - . . scaffold527 WUBlastX DNA_Maverick 267470 267754 99 - . . scaffold527 TRF Tandem_Repeat 287220 287285 132 + . . scaffold527 TRF Tandem_Repeat 287283 287311 58 + . . scaffold527 TRF Tandem_Repeat 290281 290567 152 + . . scaffold527 TRF Tandem_Repeat 290281 290568 131 + . . scaffold527 TRF Tandem_Repeat 290293 290568 169 + . . scaffold527 TRF Tandem_Repeat 290376 290531 133 + . . scaffold527 TRF Tandem_Repeat 292123 292177 110 + . . scaffold527 GLEAN mRNA 294598 301555 0.631837 - . ID=CGI_10015982; scaffold527 TRF Tandem_Repeat 300761 300851 146 + . . scaffold527 GLEAN promoter 301556 302555 0.631837 - . ID=CGI_10015982; scaffold527 TRF Tandem_Repeat 305017 305065 98 + . . scaffold527 TRF Tandem_Repeat 306460 306580 121 + . . scaffold527 WUBlastX LINE_L1 307682 307867 21 - . . scaffold527 WUBlastX LINE_L1 308607 309176 79 - . . scaffold527 WUBlastX LINE_L1-Tx1 309082 309300 61 - . . scaffold527 WUBlastX LINE_L1-Tx1 309784 309846 39 - . . scaffold527 WUBlastX LINE_L1 309799 309858 45 - . . scaffold527 WUBlastX LINE_L1 309825 310070 32 - . . scaffold527 WUBlastX LINE_L1-Tx1 309918 310061 38 - . . scaffold527 WUBlastX LINE_L1 309930 310097 32 - . . scaffold527 WUBlastX LINE_L1 309948 310067 47 - . . scaffold527 WUBlastX LINE_L1 309948 310046 57 - . . scaffold527 GLEAN mRNA 310810 311235 0.618241 - . ID=CGI_10015983; scaffold527 GLEAN promoter 311236 312235 0.618241 - . ID=CGI_10015983; scaffold527 TRF Tandem_Repeat 320004 320042 78 + . . scaffold527 TRF Tandem_Repeat 320366 320513 147 + . . scaffold527 TRF Tandem_Repeat 328745 328814 131 + . . scaffold527 TRF Tandem_Repeat 330967 330996 51 + . . scaffold527 GLEAN mRNA 335482 337494 0.997451 - . ID=CGI_10015984; scaffold527 GLEAN promoter 337495 338494 0.997451 - . ID=CGI_10015984; scaffold527 GLEAN promoter 340695 341694 0.99883 + . ID=CGI_10015985; scaffold527 GLEAN mRNA 341695 348807 0.99883 + . ID=CGI_10015985; scaffold527 TRF Tandem_Repeat 342322 342660 456 + . . scaffold527 TRF Tandem_Repeat 344865 345612 894 + . . scaffold527 GLEAN mRNA 352221 355449 0.686466 - . ID=CGI_10015986; scaffold527 GLEAN promoter 355450 356449 0.686466 - . ID=CGI_10015986; scaffold527 GLEAN promoter 355733 356732 0.999351 + . ID=CGI_10015987; scaffold527 GLEAN mRNA 356733 368285 0.999351 + . ID=CGI_10015987; scaffold527 WUBlastX DNA_hAT-hATw 358365 358499 24 - . . scaffold527 WUBlastX DNA_hAT-hATw 358665 361106 661 - . . scaffold527 TRF Tandem_Repeat 378780 378829 100 + . . scaffold527 GLEAN promoter 379042 380041 0.999372 + . ID=CGI_10015988; scaffold527 GLEAN mRNA 380042 381271 0.999372 + . ID=CGI_10015988; scaffold527 GLEAN promoter 380579 381578 1 + . ID=CGI_10015989; scaffold527 GLEAN mRNA 381579 382163 1 + . ID=CGI_10015989; scaffold527 GLEAN mRNA 384163 391408 1 - . ID=CGI_10015990; scaffold527 TRF Tandem_Repeat 389439 390423 1589 + . . scaffold527 GLEAN promoter 390540 391539 0.99939 + . ID=CGI_10015991; scaffold527 GLEAN promoter 391409 392408 1 - . ID=CGI_10015990; scaffold527 GLEAN mRNA 391540 403458 0.99939 + . ID=CGI_10015991; scaffold527 TRF Tandem_Repeat 396519 396576 116 + . . scaffold527 GLEAN mRNA 403652 416168 0.999676 - . ID=CGI_10015992; scaffold527 TRF Tandem_Repeat 408080 408117 67 + . . scaffold527 TRF Tandem_Repeat 408322 409245 1309 + . . scaffold527 TRF Tandem_Repeat 409876 409955 128 + . . scaffold527 TRF Tandem_Repeat 410628 410702 105 + . . scaffold527 TRF Tandem_Repeat 413148 413280 212 + . . scaffold527 TRF Tandem_Repeat 415418 415451 68 + . . scaffold527 GLEAN promoter 416169 417168 0.999676 - . ID=CGI_10015992; scaffold527 TRF Tandem_Repeat 425327 425366 80 + . . scaffold527 GLEAN mRNA 429864 436768 1 - . ID=CGI_10015993; scaffold527 GLEAN promoter 436769 437768 1 - . ID=CGI_10015993; scaffold527 GLEAN promoter 442779 443778 0.999999 + . ID=CGI_10015994; scaffold527 GLEAN mRNA 443779 451519 0.999999 + . ID=CGI_10015994; scaffold53 GLEAN promoter 3222 4221 0.288927 + . ID=CGI_10026644; scaffold53 GLEAN mRNA 4222 16355 0.288927 + . ID=CGI_10026644; scaffold53 GLEAN mRNA 16765 25460 1 - . ID=CGI_10026645; scaffold53 GLEAN promoter 25461 26460 1 - . ID=CGI_10026645; scaffold53 GLEAN mRNA 27686 30520 0.691202 - . ID=CGI_10026646; scaffold53 GLEAN promoter 30521 31520 0.691202 - . ID=CGI_10026646; scaffold53 WUBlastX LTR_Gypsy 33649 33894 83 - . . scaffold53 WUBlastX LTR_Gypsy 33694 34296 187 - . . scaffold53 WUBlastX LTR_Gypsy 33862 37578 1634 - . . scaffold53 WUBlastX LTR_Gypsy 34897 38292 771 - . . scaffold53 WUBlastX LTR_Gypsy 37195 38529 74 - . . scaffold53 WUBlastX LTR_Gypsy 38176 38661 37 - . . scaffold53 WUBlastX LTR_Gypsy 40677 40922 85 - . . scaffold53 WUBlastX LTR_Gypsy 40722 41324 190 - . . scaffold53 WUBlastX LTR_Gypsy 40890 44606 1634 - . . scaffold53 WUBlastX LTR_Gypsy 41925 45320 771 - . . scaffold53 WUBlastX LTR_Gypsy 44223 45557 74 - . . scaffold53 WUBlastX LTR_Gypsy 45204 45689 37 - . . scaffold53 GLEAN promoter 45766 46765 0.993675 + . ID=CGI_10026647; scaffold53 GLEAN mRNA 46766 50947 0.993675 + . ID=CGI_10026647; scaffold53 TRF Tandem_Repeat 53509 53543 70 + . . scaffold53 TRF Tandem_Repeat 55548 55594 94 + . . scaffold53 GLEAN mRNA 61535 64675 0.999895 - . ID=CGI_10026648; scaffold53 WUBlastX LINE_L2 62273 62692 32 - . . scaffold53 GLEAN promoter 64676 65675 0.999895 - . ID=CGI_10026648; scaffold53 GLEAN promoter 68197 69196 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 68475 68527 52 + . . scaffold53 GLEAN mRNA 69197 125241 0.981118 + . ID=CGI_10026649; scaffold53 TRF Tandem_Repeat 69430 69455 52 + . . scaffold53 TRF Tandem_Repeat 84576 84640 130 + . . scaffold53 TRF Tandem_Repeat 87537 87594 116 + . . scaffold53 TRF Tandem_Repeat 89959 90014 112 + . . scaffold53 TRF Tandem_Repeat 91904 91952 80 + . . scaffold53 TRF Tandem_Repeat 106728 106803 152 + . . scaffold53 TRF Tandem_Repeat 111587 111981 745 + . . scaffold53 TRF Tandem_Repeat 111618 111907 102 + . . scaffold53 WUBlastX LINE_RTE-X 111984 114047 851 + . . scaffold53 WUBlastX LINE_RTE-X 112083 114446 585 + . . scaffold53 TRF Tandem_Repeat 116615 116647 66 + . . scaffold53 GLEAN promoter 125818 126817 0.539131 + . ID=CGI_10026650; scaffold53 GLEAN mRNA 126818 178634 0.539131 + . ID=CGI_10026650; scaffold53 TRF Tandem_Repeat 140529 140586 116 + . . scaffold53 TRF Tandem_Repeat 145838 146088 394 + . . scaffold53 TRF Tandem_Repeat 150795 150858 101 + . . scaffold53 TRF Tandem_Repeat 152989 153042 101 + . . scaffold53 TRF Tandem_Repeat 153868 153905 53 + . . scaffold53 TRF Tandem_Repeat 163143 163181 71 + . . scaffold53 TRF Tandem_Repeat 163514 163543 60 + . . scaffold53 TRF Tandem_Repeat 165146 165179 68 + . . scaffold53 TRF Tandem_Repeat 166366 166473 175 + . . scaffold53 TRF Tandem_Repeat 166393 166454 56 + . . scaffold53 TRF Tandem_Repeat 167296 167362 134 + . . scaffold53 TRF Tandem_Repeat 186626 186694 54 + . . scaffold53 TRF Tandem_Repeat 191744 191837 84 + . . scaffold53 TRF Tandem_Repeat 194004 194041 76 + . . scaffold53 GLEAN promoter 197523 198522 0.365995 + . ID=CGI_10026651; scaffold53 GLEAN mRNA 198523 206916 0.365995 + . ID=CGI_10026651; scaffold53 GLEAN mRNA 199395 207208 0.980215 - . ID=CGI_10026652; scaffold53 GLEAN promoter 207209 208208 0.980215 - . ID=CGI_10026652; scaffold53 TRF Tandem_Repeat 209266 209292 54 + . . scaffold53 GLEAN promoter 209514 210513 0.725138 + . ID=CGI_10026653; scaffold53 GLEAN mRNA 210514 217696 0.725138 + . ID=CGI_10026653; scaffold53 GLEAN mRNA 222404 234686 1 - . ID=CGI_10026654; scaffold53 TRF Tandem_Repeat 225552 225588 56 + . . scaffold53 TRF Tandem_Repeat 230935 230988 101 + . . scaffold53 GLEAN promoter 234687 235686 1 - . ID=CGI_10026654; scaffold53 TRF Tandem_Repeat 237072 237105 50 + . . scaffold53 GLEAN promoter 246099 247098 0.995871 + . ID=CGI_10026655; scaffold53 GLEAN mRNA 247099 248175 0.995871 + . ID=CGI_10026655; scaffold53 GLEAN promoter 250201 251200 0.650889 + . ID=CGI_10026656; scaffold53 GLEAN mRNA 251201 275185 0.650889 + . ID=CGI_10026656; scaffold53 TRF Tandem_Repeat 268793 268829 74 + . . scaffold53 TRF Tandem_Repeat 275622 275692 142 + . . scaffold53 TRF Tandem_Repeat 282611 282664 108 + . . scaffold53 GLEAN promoter 286735 287734 0.531615 + . ID=CGI_10026657; scaffold53 GLEAN mRNA 287735 288367 0.531615 + . ID=CGI_10026657; scaffold53 TRF Tandem_Repeat 290746 290784 78 + . . scaffold53 TRF Tandem_Repeat 336856 337724 1361 + . . scaffold53 TRF Tandem_Repeat 338910 338941 64 + . . scaffold53 TRF Tandem_Repeat 340923 340973 102 + . . scaffold53 TRF Tandem_Repeat 341004 341037 54 + . . scaffold53 TRF Tandem_Repeat 343544 343578 70 + . . scaffold53 GLEAN promoter 352339 353338 0.968668 + . ID=CGI_10026658; scaffold53 GLEAN mRNA 353339 376434 0.968668 + . ID=CGI_10026658; scaffold53 TRF Tandem_Repeat 357035 357070 72 + . . scaffold53 TRF Tandem_Repeat 360108 360153 92 + . . scaffold53 TRF Tandem_Repeat 363402 363457 105 + . . scaffold53 TRF Tandem_Repeat 364660 364693 61 + . . scaffold53 TRF Tandem_Repeat 371208 371781 421 + . . scaffold53 TRF Tandem_Repeat 372889 372923 61 + . . scaffold53 TRF Tandem_Repeat 374096 374127 57 + . . scaffold53 TRF Tandem_Repeat 375827 375913 86 + . . scaffold53 TRF Tandem_Repeat 375839 375926 54 + . . scaffold53 GLEAN promoter 377541 378540 0.998697 + . ID=CGI_10026659; scaffold53 GLEAN mRNA 378541 389330 0.998697 + . ID=CGI_10026659; scaffold53 TRF Tandem_Repeat 385398 385584 95 + . . scaffold53 TRF Tandem_Repeat 388282 388370 90 + . . scaffold53 TRF Tandem_Repeat 388307 388370 58 + . . scaffold53 TRF Tandem_Repeat 388443 388503 50 + . . scaffold53 TRF Tandem_Repeat 389659 389684 52 + . . scaffold53 GLEAN mRNA 395717 399389 0.925243 - . ID=CGI_10026660; scaffold53 GLEAN promoter 399390 400389 0.925243 - . ID=CGI_10026660; scaffold53 WUBlastX DNA_Maverick 399885 400058 78 - . . scaffold53 WUBlastX DNA_Maverick 399891 400001 98 - . . scaffold53 WUBlastX DNA_Maverick 400024 400740 223 - . . scaffold53 WUBlastX DNA_Maverick 400024 400869 124 - . . scaffold53 WUBlastX DNA_Maverick 400024 400605 353 - . . scaffold53 WUBlastX DNA_Maverick 400874 400981 30 - . . scaffold53 WUBlastX DNA_Maverick 400901 401005 59 - . . scaffold53 WUBlastX DNA_Harbinger 401296 401508 82 + . . scaffold53 TRF Tandem_Repeat 401675 401760 79 + . . scaffold53 GLEAN mRNA 410056 420076 0.727947 - . ID=CGI_10026662; scaffold53 GLEAN promoter 418872 419871 0.999973 + . ID=CGI_10026663; scaffold53 GLEAN mRNA 419872 442257 0.999973 + . ID=CGI_10026663; scaffold53 GLEAN promoter 420077 421076 0.727947 - . ID=CGI_10026662; scaffold53 TRF Tandem_Repeat 421949 422086 129 + . . scaffold53 TRF Tandem_Repeat 427725 427862 129 + . . scaffold53 GLEAN mRNA 430431 452569 0.990717 - . ID=CGI_10026664; scaffold53 GLEAN promoter 452570 453569 0.990717 - . ID=CGI_10026664; scaffold53 TRF Tandem_Repeat 458162 458197 72 + . . scaffold53 GLEAN mRNA 463998 472805 1 - . ID=CGI_10026665; scaffold53 TRF Tandem_Repeat 471918 471954 74 + . . scaffold53 GLEAN promoter 472806 473805 1 - . ID=CGI_10026665; scaffold53 GLEAN promoter 475368 476367 0.77678 + . ID=CGI_10026666; scaffold53 GLEAN mRNA 476368 476589 0.77678 + . ID=CGI_10026666; scaffold53 GLEAN mRNA 479054 491695 0.702305 - . ID=CGI_10026667; scaffold53 GLEAN promoter 491696 492695 0.702305 - . ID=CGI_10026667; scaffold53 TRF Tandem_Repeat 494781 494861 144 + . . scaffold53 GLEAN promoter 494968 495967 0.998671 + . ID=CGI_10026668; scaffold53 GLEAN mRNA 495968 499336 0.998671 + . ID=CGI_10026668; scaffold53 TRF Tandem_Repeat 501969 502156 214 + . . scaffold53 TRF Tandem_Repeat 501972 502144 265 + . . scaffold53 TRF Tandem_Repeat 502207 502339 122 + . . scaffold53 TRF Tandem_Repeat 504905 505165 317 + . . scaffold53 TRF Tandem_Repeat 504913 505143 220 + . . scaffold53 TRF Tandem_Repeat 504914 505167 341 + . . scaffold53 TRF Tandem_Repeat 515068 515107 80 + . . scaffold53 WUBlastX LTR_Gypsy 516146 517849 1276 + . . scaffold53 WUBlastX LTR_Gypsy 517821 519395 478 + . . scaffold53 WUBlastX LTR_Gypsy 518016 519251 822 + . . scaffold53 WUBlastX LTR_Gypsy 519045 519506 48 + . . scaffold53 GLEAN promoter 521132 522131 0.864896 + . ID=CGI_10026669; scaffold53 TRF Tandem_Repeat 521198 521235 76 + . . scaffold53 GLEAN mRNA 522132 537769 0.864896 + . ID=CGI_10026669; scaffold53 GLEAN mRNA 538477 543136 0.989114 - . ID=CGI_10026670; scaffold53 GLEAN promoter 543137 544136 0.989114 - . ID=CGI_10026670; scaffold53 GLEAN promoter 544001 545000 0.567528 + . ID=CGI_10026671; scaffold53 GLEAN mRNA 545001 589869 0.567528 + . ID=CGI_10026671; scaffold53 TRF Tandem_Repeat 545958 545988 62 + . . scaffold53 WUBlastX LINE_L1-Tx1 547748 547969 27 - . . scaffold53 WUBlastX LINE_L1-Tx1 547805 547993 28 - . . scaffold53 WUBlastX LINE_L1-Tx1 547883 547993 49 - . . scaffold53 WUBlastX LINE_L1 547998 548087 38 - . . scaffold53 WUBlastX LINE_L1 548164 548445 72 - . . scaffold53 WUBlastX LINE_L1-Tx1 548185 548358 89 - . . scaffold53 TRF Tandem_Repeat 579420 580415 1019 + . . scaffold53 TRF Tandem_Repeat 585211 585236 52 + . . scaffold53 TRF Tandem_Repeat 606831 606856 52 + . . scaffold53 TRF Tandem_Repeat 608694 608725 55 + . . scaffold53 GLEAN promoter 609573 610572 0.649519 + . ID=CGI_10026672; scaffold53 GLEAN mRNA 610573 611664 0.649519 + . ID=CGI_10026672; scaffold53 GLEAN mRNA 613425 613775 0.69447 - . ID=CGI_10026673; scaffold53 GLEAN promoter 613776 614775 0.69447 - . ID=CGI_10026673; scaffold53 GLEAN promoter 616746 617745 1 + . ID=CGI_10026674; scaffold53 GLEAN mRNA 617746 622514 1 + . ID=CGI_10026674; scaffold53 TRF Tandem_Repeat 620703 620785 166 + . . scaffold53 TRF Tandem_Repeat 624102 624129 56 + . . scaffold53 GLEAN mRNA 631077 633534 1 - . ID=CGI_10026675; scaffold53 GLEAN promoter 633535 634534 1 - . ID=CGI_10026675; scaffold53 GLEAN promoter 634504 635503 0.341465 + . ID=CGI_10026676; scaffold53 GLEAN mRNA 635504 641689 0.341465 + . ID=CGI_10026676; scaffold53 TRF Tandem_Repeat 639437 639496 120 + . . scaffold53 TRF Tandem_Repeat 641857 641904 96 + . . scaffold53 GLEAN mRNA 645650 646777 1 - . ID=CGI_10026677; scaffold53 GLEAN promoter 646778 647777 1 - . ID=CGI_10026677; scaffold53 GLEAN mRNA 647909 676334 0.999675 - . ID=CGI_10026678; scaffold53 TRF Tandem_Repeat 649474 649521 60 + . . scaffold53 TRF Tandem_Repeat 655619 655788 243 + . . scaffold53 TRF Tandem_Repeat 656637 656868 270 + . . scaffold53 GLEAN promoter 657414 658413 0.999053 + . ID=CGI_10026679; scaffold53 GLEAN mRNA 658414 663601 0.999053 + . ID=CGI_10026679; scaffold53 GLEAN promoter 676335 677334 0.999675 - . ID=CGI_10026678; scaffold53 TRF Tandem_Repeat 679232 679282 75 + . . scaffold53 TRF Tandem_Repeat 679732 679793 90 + . . scaffold53 TRF Tandem_Repeat 679999 680043 90 + . . scaffold53 TRF Tandem_Repeat 682440 682506 89 + . . scaffold53 WUBlastX DNA_Kolobok-IS4 683369 684136 58 - . . scaffold53 TRF Tandem_Repeat 694539 694886 515 + . . scaffold53 GLEAN promoter 695297 696296 1 + . ID=CGI_10026680; scaffold53 TRF Tandem_Repeat 695544 695785 308 + . . scaffold53 TRF Tandem_Repeat 695552 695761 221 + . . scaffold53 GLEAN mRNA 696297 708394 1 + . ID=CGI_10026680; scaffold53 TRF Tandem_Repeat 696641 696687 94 + . . scaffold53 GLEAN mRNA 711021 711689 0.999415 - . ID=CGI_10026681; scaffold53 TRF Tandem_Repeat 711028 712159 1967 + . . scaffold53 GLEAN promoter 711690 712689 0.999415 - . ID=CGI_10026681; scaffold53 GLEAN mRNA 717033 733892 1 - . ID=CGI_10026682; scaffold53 TRF Tandem_Repeat 724684 724733 82 + . . scaffold53 WUBlastX LINE_RTE-X 725812 725994 106 - . . scaffold53 TRF Tandem_Repeat 731430 731478 71 + . . scaffold53 GLEAN promoter 733893 734892 1 - . ID=CGI_10026682; scaffold53 WUBlastX LINE_RTE-X 736306 736461 44 - . . scaffold53 WUBlastX LINE_RTE-X 736493 736645 22 - . . scaffold53 TRF Tandem_Repeat 737881 738694 1303 + . . scaffold53 GLEAN promoter 741670 742669 1 + . ID=CGI_10026683; scaffold53 GLEAN mRNA 742670 762383 1 + . ID=CGI_10026683; scaffold53 TRF Tandem_Repeat 743780 743814 70 + . . scaffold53 TRF Tandem_Repeat 766558 766598 73 + . . scaffold53 GLEAN mRNA 767804 769421 1 - . ID=CGI_10026684; scaffold53 GLEAN promoter 768260 769259 0.768032 + . ID=CGI_10026685; scaffold53 GLEAN mRNA 769260 781705 0.768032 + . ID=CGI_10026685; scaffold53 GLEAN promoter 769422 770421 1 - . ID=CGI_10026684; scaffold53 TRF Tandem_Repeat 781086 781135 100 + . . scaffold53 GLEAN mRNA 785580 786746 0.69447 - . ID=CGI_10026686; scaffold53 GLEAN promoter 786747 787746 0.69447 - . ID=CGI_10026686; scaffold53 GLEAN mRNA 806154 807320 0.69447 - . ID=CGI_10026687; scaffold53 GLEAN promoter 807321 808320 0.69447 - . ID=CGI_10026687; scaffold53 TRF Tandem_Repeat 832105 833457 1030 + . . scaffold53 GLEAN promoter 845262 846261 0.481188 + . ID=CGI_10026688; scaffold53 GLEAN mRNA 846262 847371 0.481188 + . ID=CGI_10026688; scaffold53 TRF Tandem_Repeat 849999 850303 366 + . . scaffold53 TRF Tandem_Repeat 851566 851631 116 + . . scaffold53 GLEAN mRNA 856002 864161 0.966732 - . ID=CGI_10026689; scaffold53 TRF Tandem_Repeat 860900 860956 114 + . . scaffold53 GLEAN promoter 864162 865161 0.966732 - . ID=CGI_10026689; scaffold53 TRF Tandem_Repeat 865427 865533 115 + . . scaffold53 TRF Tandem_Repeat 868787 868820 52 + . . scaffold53 TRF Tandem_Repeat 869515 869566 97 + . . scaffold53 TRF Tandem_Repeat 870341 870598 136 + . . scaffold53 GLEAN mRNA 870733 884909 0.999942 - . ID=CGI_10026690; scaffold53 TRF Tandem_Repeat 872702 872769 118 + . . scaffold53 TRF Tandem_Repeat 877412 877453 84 + . . scaffold53 TRF Tandem_Repeat 879010 879060 102 + . . scaffold53 GLEAN promoter 884910 885909 0.999942 - . ID=CGI_10026690; scaffold53 WUBlastX LINE_L1-Tx1 894052 894363 59 - . . scaffold53 TRF Tandem_Repeat 894705 895104 651 + . . scaffold53 TRF Tandem_Repeat 905446 905687 394 + . . scaffold53 TRF Tandem_Repeat 909630 909660 62 + . . scaffold53 WUBlastX LINE_L2 913722 914030 117 + . . scaffold53 GLEAN promoter 914725 915724 0.995283 + . ID=CGI_10026691; scaffold53 GLEAN mRNA 915725 916468 0.995283 + . ID=CGI_10026691; scaffold53 WUBlastX LINE_RTE-X 926216 926359 64 - . . scaffold53 WUBlastX LINE_RTE-X 926228 926413 32 - . . scaffold53 TRF Tandem_Repeat 928926 928967 84 + . . scaffold53 WUBlastX LTR_Gypsy 932543 932848 54 - . . scaffold53 WUBlastX LTR_Gypsy 932663 932860 85 - . . scaffold53 WUBlastX LTR_Gypsy 932717 932854 135 - . . scaffold53 WUBlastX LTR_Gypsy 932720 932884 134 - . . scaffold53 WUBlastX LTR_Gypsy 932723 932932 57 - . . scaffold53 WUBlastX LTR_Gypsy 932881 932943 42 - . . scaffold53 WUBlastX DNA_hAT-Tip100 932940 933224 27 - . . scaffold53 TRF Tandem_Repeat 933820 933873 108 + . . scaffold53 TRF Tandem_Repeat 933873 933906 68 + . . scaffold53 WUBlastX DNA_Sola 948121 948420 162 + . . scaffold53 WUBlastX DNA_Sola 949053 949226 30 + . . scaffold53 WUBlastX DNA_Sola 949360 949644 186 + . . scaffold53 WUBlastX DNA_Sola 949375 949695 109 + . . scaffold53 WUBlastX DNA_Sola 949988 950176 138 + . . scaffold53 TRF Tandem_Repeat 950310 950341 64 + . . scaffold53 WUBlastX DNA_Sola 950345 950752 84 + . . scaffold53 WUBlastX DNA_Sola 950429 950758 170 + . . scaffold53 WUBlastX DNA_Sola 950979 951638 64 + . . scaffold53 WUBlastX DNA_Sola 951081 951575 194 + . . scaffold53 GLEAN mRNA 954675 956648 1 - . ID=CGI_10026692; scaffold53 GLEAN promoter 956649 957648 1 - . ID=CGI_10026692; scaffold53 GLEAN mRNA 956798 968528 0.999675 - . ID=CGI_10026693; scaffold53 GLEAN promoter 968529 969528 0.999675 - . ID=CGI_10026693; scaffold53 TRF Tandem_Repeat 969335 969401 134 + . . scaffold53 GLEAN promoter 973910 974909 0.88993 + . ID=CGI_10026694; scaffold53 GLEAN mRNA 974910 978228 0.88993 + . ID=CGI_10026694; scaffold53 GLEAN mRNA 983465 1007230 0.466135 - . ID=CGI_10026695; scaffold53 TRF Tandem_Repeat 985872 986778 1109 + . . scaffold53 TRF Tandem_Repeat 988174 988215 59 + . . scaffold53 GLEAN promoter 993548 994547 0.999676 + . ID=CGI_10026696; scaffold53 GLEAN mRNA 994548 999941 0.999676 + . ID=CGI_10026696; scaffold53 WUBlastX DNA_TcMar-Fot1 1003789 1004352 365 + . . scaffold53 WUBlastX DNA_TcMar-Fot1 1004300 1005121 134 + . . scaffold53 WUBlastX DNA_TcMar-Fot1 1004333 1004989 449 + . . scaffold53 TRF Tandem_Repeat 1006240 1006277 76 + . . scaffold53 GLEAN promoter 1007231 1008230 0.466135 - . ID=CGI_10026695; scaffold53 WUBlastX LTR_Ngaro 1017645 1017872 41 + . . scaffold53 WUBlastX LTR_Ngaro 1017756 1017878 55 + . . scaffold53 WUBlastX LINE_RTE-BovB 1023349 1023753 61 + . . scaffold53 WUBlastX LINE_RTE-BovB 1023411 1023674 79 + . . scaffold53 TRF Tandem_Repeat 1027478 1027578 71 + . . scaffold53 WUBlastX DNA_Merlin 1034576 1034953 171 - . . scaffold53 WUBlastX DNA_Merlin 1035123 1035209 36 - . . scaffold53 WUBlastX DNA_Merlin 1035147 1035365 40 - . . scaffold53 WUBlastX DNA_Merlin 1035165 1035305 42 - . . scaffold53 TRF Tandem_Repeat 1036538 1036566 58 + . . scaffold53 TRF Tandem_Repeat 1036701 1036763 126 + . . scaffold53 TRF Tandem_Repeat 1038636 1038680 90 + . . scaffold53 TRF Tandem_Repeat 1039723 1039786 65 + . . scaffold53 TRF Tandem_Repeat 1046181 1046227 94 + . . scaffold53 GLEAN mRNA 1052733 1053884 0.531615 - . ID=CGI_10026697; scaffold53 GLEAN promoter 1053885 1054884 0.531615 - . ID=CGI_10026697; scaffold53 WUBlastX LINE_CR1 1070260 1070301 24 - . . scaffold53 WUBlastX LINE_CR1 1070291 1070431 26 - . . scaffold53 WUBlastX LINE_CR1 1070318 1070461 52 - . . scaffold53 WUBlastX LINE_CR1-L2 1070517 1070771 25 - . . scaffold53 WUBlastX LINE_L2 1070580 1070774 26 - . . scaffold53 WUBlastX LINE_CR1-L2 1070652 1070774 44 - . . scaffold53 WUBlastX LINE_CR1-L2 1070768 1071253 55 - . . scaffold53 WUBlastX LINE_L2 1071086 1071292 44 - . . scaffold53 WUBlastX LINE_L2 1071240 1071365 32 - . . scaffold53 WUBlastX LINE_CR1-L2 1071346 1071489 81 - . . scaffold53 WUBlastX LINE_L2 1071415 1071612 58 - . . scaffold53 WUBlastX LINE_L2 1071497 1071682 23 - . . scaffold53 WUBlastX LINE_RTE-X 1084801 1086705 402 - . . scaffold53 WUBlastX LINE_L2 1086184 1086837 35 - . . scaffold53 WUBlastX LINE_L1-Tx1 1086871 1087161 138 - . . scaffold53 WUBlastX LINE_L1 1086880 1087218 128 - . . scaffold53 WUBlastX LINE_L1-Tx1 1086952 1087407 116 - . . scaffold53 TRF Tandem_Repeat 1088555 1089741 1774 + . . scaffold53 GLEAN promoter 1089801 1090800 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1090124 1090160 65 + . . scaffold53 GLEAN mRNA 1090801 1110527 1 + . ID=CGI_10026698; scaffold53 TRF Tandem_Repeat 1094558 1094622 130 + . . scaffold53 TRF Tandem_Repeat 1099611 1099648 76 + . . scaffold53 TRF Tandem_Repeat 1100345 1100389 81 + . . scaffold53 TRF Tandem_Repeat 1100345 1100392 60 + . . scaffold53 TRF Tandem_Repeat 1103508 1103779 436 + . . scaffold53 TRF Tandem_Repeat 1106184 1108489 2814 + . . scaffold53 TRF Tandem_Repeat 1109119 1109245 254 + . . scaffold53 TRF Tandem_Repeat 1115767 1115874 180 + . . scaffold53 GLEAN promoter 1117540 1118539 0.654333 + . ID=CGI_10026699; scaffold53 GLEAN mRNA 1118540 1138631 0.654333 + . ID=CGI_10026699; scaffold53 WUBlastX LINE_RTE-X 1125964 1128489 808 + . . scaffold53 TRF Tandem_Repeat 1138179 1138203 50 + . . scaffold53 GLEAN promoter 1139958 1140957 1 + . ID=CGI_10026700; scaffold53 GLEAN mRNA 1140958 1142469 1 + . ID=CGI_10026700; scaffold53 TRF Tandem_Repeat 1143477 1143980 735 + . . scaffold53 TRF Tandem_Repeat 1145420 1145459 80 + . . scaffold53 GLEAN promoter 1146959 1147958 0.999999 + . ID=CGI_10026701; scaffold53 GLEAN mRNA 1147959 1150073 0.999999 + . ID=CGI_10026701; scaffold53 TRF Tandem_Repeat 1150071 1150193 246 + . . scaffold53 WUBlastX LINE_CR1 1152289 1152885 306 - . . scaffold53 WUBlastX LINE_CR1 1152409 1152897 345 - . . scaffold53 WUBlastX LINE_CR1 1152412 1153287 83 - . . scaffold53 WUBlastX LINE_CR1 1152415 1153068 202 - . . scaffold53 WUBlastX LINE_I 1153635 1153727 24 - . . scaffold53 GLEAN promoter 1153714 1154713 0.994946 + . ID=CGI_10026702; scaffold53 GLEAN mRNA 1154714 1165146 0.994946 + . ID=CGI_10026702; scaffold53 WUBlastX DNA_IS4EU 1154744 1155301 216 + . . scaffold53 WUBlastX DNA_IS4EU 1155517 1155648 54 + . . scaffold53 WUBlastX DNA_IS4EU 1155538 1155711 93 + . . scaffold53 WUBlastX DNA_IS4EU 1156241 1156813 160 + . . scaffold53 WUBlastX DNA_IS4EU 1157473 1157916 405 - . . scaffold53 WUBlastX DNA_IS4EU 1157925 1158461 236 - . . scaffold53 WUBlastX DNA_Kolobok-IS4 1158589 1158738 32 - . . scaffold53 WUBlastX DNA_IS4EU 1158658 1158930 111 - . . scaffold53 WUBlastX DNA_Sola 1160547 1160816 136 - . . scaffold53 WUBlastX DNA_Sola 1160613 1161602 182 - . . scaffold53 WUBlastX DNA_Sola 1161084 1161605 230 - . . scaffold53 WUBlastX DNA_Sola 1161171 1161596 230 - . . scaffold53 WUBlastX DNA_Sola 1161679 1161765 20 - . . scaffold53 GLEAN promoter 1176611 1177610 1 + . ID=CGI_10026703; scaffold53 TRF Tandem_Repeat 1176691 1176736 92 + . . scaffold53 WUBlastX DNA_En-Spm 1177548 1177637 20 + . . scaffold53 GLEAN mRNA 1177611 1179343 1 + . ID=CGI_10026703; scaffold53 WUBlastX LINE_RTE-X 1179964 1180233 27 - . . scaffold53 WUBlastX LINE_RTE-X 1180072 1180233 78 - . . scaffold53 GLEAN promoter 1204020 1205019 0.776794 + . ID=CGI_10026704; scaffold53 GLEAN mRNA 1205020 1205358 0.776794 + . ID=CGI_10026704; scaffold53 GLEAN promoter 1209308 1210307 0.544852 + . ID=CGI_10026705; scaffold53 GLEAN mRNA 1210308 1211135 0.544852 + . ID=CGI_10026705; scaffold53 TRF Tandem_Repeat 1212732 1212772 57 + . . scaffold53 TRF Tandem_Repeat 1212820 1212859 80 + . . scaffold531 GLEAN promoter 1 733 0.992184 + . ID=CGI_10014485; scaffold531 GLEAN mRNA 734 15487 0.992184 + . ID=CGI_10014485; scaffold531 TRF Tandem_Repeat 7238 7634 600 + . . scaffold531 TRF Tandem_Repeat 7238 7634 539 + . . scaffold531 WUBlastX LINE_RTE-X 18466 18720 26 + . . scaffold531 WUBlastX LINE_RTE-X 19551 19724 47 + . . scaffold531 WUBlastX LINE_RTE-X 19679 19768 40 + . . scaffold531 WUBlastX LINE_RTE-X 19679 19792 33 + . . scaffold531 WUBlastX LINE_RTE-X 19679 19750 47 + . . scaffold531 WUBlastX LINE_RTE-X 19853 20032 58 + . . scaffold531 WUBlastX LINE_RTE-X 19883 20185 24 + . . scaffold531 WUBlastX DNA_Academ 22590 22982 177 - . . scaffold531 GLEAN mRNA 22748 29196 0.526203 - . ID=CGI_10014486; scaffold531 WUBlastX DNA_Academ 22982 23659 299 - . . scaffold531 WUBlastX DNA_Academ 25026 25514 195 - . . scaffold531 WUBlastX DNA_Academ 25514 26137 358 - . . scaffold531 WUBlastX DNA_Academ 25523 26266 332 - . . scaffold531 WUBlastX DNA_Academ 26356 26691 61 - . . scaffold531 WUBlastX DNA_Academ 26386 26589 68 - . . scaffold531 WUBlastX DNA_Academ 26386 26550 125 - . . scaffold531 GLEAN promoter 29197 30196 0.526203 - . ID=CGI_10014486; scaffold531 GLEAN mRNA 29622 32242 1 - . ID=CGI_10014487; scaffold531 GLEAN promoter 32243 33242 1 - . ID=CGI_10014487; scaffold531 GLEAN promoter 32398 33397 0.651942 + . ID=CGI_10014488; scaffold531 GLEAN mRNA 33398 55984 0.651942 + . ID=CGI_10014488; scaffold531 TRF Tandem_Repeat 49370 49445 152 + . . scaffold531 GLEAN mRNA 55777 61620 0.99879 - . ID=CGI_10014489; scaffold531 TRF Tandem_Repeat 60711 60736 52 + . . scaffold531 GLEAN promoter 61621 62620 0.99879 - . ID=CGI_10014489; scaffold531 TRF Tandem_Repeat 69597 69630 68 + . . scaffold531 WUBlastX LTR_DIRS 71151 71603 53 + . . scaffold531 TRF Tandem_Repeat 79307 79352 60 + . . scaffold531 GLEAN mRNA 81235 99394 0.999624 - . ID=CGI_10014490; scaffold531 TRF Tandem_Repeat 82600 82645 58 + . . scaffold531 TRF Tandem_Repeat 97583 97619 74 + . . scaffold531 GLEAN promoter 99395 100394 0.999624 - . ID=CGI_10014490; scaffold531 GLEAN mRNA 104023 105477 1 - . ID=CGI_10014491; scaffold531 GLEAN promoter 105139 106138 0.999949 + . ID=CGI_10014492; scaffold531 GLEAN promoter 105478 106477 1 - . ID=CGI_10014491; scaffold531 GLEAN mRNA 106139 113929 0.999949 + . ID=CGI_10014492; scaffold531 GLEAN mRNA 112750 116119 0.999676 - . ID=CGI_10014493; scaffold531 GLEAN promoter 116120 117119 0.999676 - . ID=CGI_10014493; scaffold531 TRF Tandem_Repeat 122051 122342 530 + . . scaffold531 GLEAN promoter 127742 128741 0.481661 + . ID=CGI_10014494; scaffold531 GLEAN mRNA 128742 130102 0.481661 + . ID=CGI_10014494; scaffold531 GLEAN mRNA 134266 140594 0.575444 - . ID=CGI_10014495; scaffold531 GLEAN promoter 140595 141594 0.575444 - . ID=CGI_10014495; scaffold531 WUBlastX LINE_RTE-X 146898 147173 74 - . . scaffold531 WUBlastX LINE_RTE-X 146967 147194 85 - . . scaffold531 TRF Tandem_Repeat 159449 159482 59 + . . scaffold531 WUBlastX LINE_RTE-X 159976 160794 114 - . . scaffold531 WUBlastX LINE_RTE-X 160135 160794 146 - . . scaffold531 WUBlastX LINE_RTE-X 160385 160627 158 - . . scaffold531 WUBlastX LINE_L2 162187 165423 1742 - . . scaffold531 WUBlastX LINE_L2 166219 166917 168 - . . scaffold531 WUBlastX LINE_CR1-L2 166246 166770 181 - . . scaffold531 TRF Tandem_Repeat 178791 178853 126 + . . scaffold531 TRF Tandem_Repeat 180553 180669 58 + . . scaffold531 TRF Tandem_Repeat 180596 180672 73 + . . scaffold531 TRF Tandem_Repeat 182660 183674 1256 + . . scaffold531 GLEAN mRNA 184014 187721 0.991253 - . ID=CGI_10014496; scaffold531 GLEAN promoter 187722 188721 0.991253 - . ID=CGI_10014496; scaffold531 GLEAN mRNA 195664 215102 0.999351 - . ID=CGI_10014497; scaffold531 TRF Tandem_Repeat 214886 214967 128 + . . scaffold531 GLEAN mRNA 215102 230107 0.982892 - . ID=CGI_10014498; scaffold531 GLEAN promoter 215103 216102 0.999351 - . ID=CGI_10014497; scaffold531 GLEAN promoter 218191 219190 0.999966 + . ID=CGI_10014499; scaffold531 GLEAN mRNA 219191 221512 0.999966 + . ID=CGI_10014499; scaffold531 GLEAN promoter 225584 226583 0.996815 + . ID=CGI_10014500; scaffold531 GLEAN mRNA 226584 229245 0.996815 + . ID=CGI_10014500; scaffold531 GLEAN promoter 230108 231107 0.982892 - . ID=CGI_10014498; scaffold531 TRF Tandem_Repeat 234245 234457 266 + . . scaffold531 TRF Tandem_Repeat 234247 234463 274 + . . scaffold531 WUBlastX DNA_Crypton 238100 238411 74 - . . scaffold531 GLEAN mRNA 242035 245090 0.648847 - . ID=CGI_10014502; scaffold531 TRF Tandem_Repeat 243716 243875 95 + . . scaffold531 TRF Tandem_Repeat 243718 243898 83 + . . scaffold531 GLEAN promoter 245091 246090 0.648847 - . ID=CGI_10014502; scaffold531 WUBlastX DNA_TcMar-Tc1 249486 250055 301 - . . scaffold531 WUBlastX DNA_TcMar-Tc1 250061 250408 42 - . . scaffold531 GLEAN mRNA 258316 273365 0.999734 - . ID=CGI_10014503; scaffold531 TRF Tandem_Repeat 261681 262441 956 + . . scaffold531 TRF Tandem_Repeat 268807 268887 162 + . . scaffold531 TRF Tandem_Repeat 271097 271155 118 + . . scaffold531 GLEAN promoter 272897 273896 0.548646 + . ID=CGI_10014504; scaffold531 GLEAN promoter 273366 274365 0.999734 - . ID=CGI_10014503; scaffold531 GLEAN mRNA 273897 286113 0.548646 + . ID=CGI_10014504; scaffold531 GLEAN mRNA 288775 292636 0.841405 - . ID=CGI_10014505; scaffold531 GLEAN promoter 292637 293636 0.841405 - . ID=CGI_10014505; scaffold531 TRF Tandem_Repeat 310236 310293 116 + . . scaffold531 WUBlastX LTR_Ngaro 310843 311154 32 + . . scaffold531 WUBlastX LTR_Gypsy-Cigr 329520 329723 63 - . . scaffold531 WUBlastX LTR_Gypsy-Cigr 329723 330070 268 - . . scaffold531 WUBlastX LTR_Gypsy 329783 330196 114 - . . scaffold531 WUBlastX LTR_Gypsy-Cigr 330122 330256 61 - . . scaffold531 WUBlastX LTR_Gypsy 330223 330348 60 - . . scaffold531 WUBlastX LTR_Gypsy 330259 330618 40 - . . scaffold531 WUBlastX LTR_Gypsy 330541 331065 43 - . . scaffold531 WUBlastX LTR_Gypsy-Cigr 330671 331459 97 - . . scaffold531 WUBlastX LTR_Gypsy-Cigr 330815 331450 153 - . . scaffold531 WUBlastX LTR_Gypsy 331112 331453 224 - . . scaffold531 WUBlastX LTR_Gypsy-Cigr 331112 331543 204 - . . scaffold531 WUBlastX LTR_Gypsy 331485 332093 79 - . . scaffold531 WUBlastX LTR_Gypsy 331485 331994 202 - . . scaffold531 WUBlastX LTR_ERVL 332332 332523 30 - . . scaffold531 WUBlastX LTR_Gypsy 332665 332805 20 - . . scaffold531 WUBlastX LTR_Gypsy 332728 332829 36 - . . scaffold531 TRF Tandem_Repeat 333822 333918 117 + . . scaffold531 TRF Tandem_Repeat 334093 334126 50 + . . scaffold531 WUBlastX LTR_Gypsy 336845 337438 108 - . . scaffold531 WUBlastX LTR_Gypsy 336917 337651 52 - . . scaffold531 WUBlastX LTR_Gypsy-Cigr 336917 337417 141 - . . scaffold531 WUBlastX LTR_Gypsy 337737 337955 21 - . . scaffold531 WUBlastX LTR_Gypsy-Cigr 337830 337976 35 - . . scaffold531 WUBlastX LTR_Gypsy 337896 338360 29 - . . scaffold531 WUBlastX LTR_Gypsy 338154 338261 32 - . . scaffold531 WUBlastX LTR_Gypsy 338163 338246 42 - . . scaffold531 WUBlastX LTR_Gypsy 352588 353019 39 + . . scaffold531 WUBlastX LTR_Gypsy 352774 353127 34 + . . scaffold531 WUBlastX LTR_Copia 353704 353862 26 + . . scaffold531 WUBlastX LTR_Gypsy 353802 354326 128 + . . scaffold531 WUBlastX LTR_Gypsy 354166 355179 307 + . . scaffold531 WUBlastX LTR_Gypsy 354319 355434 482 + . . scaffold531 WUBlastX DNA_Harbinger 357450 357797 91 + . . scaffold531 WUBlastX DNA_Harbinger 358637 359155 276 - . . scaffold531 WUBlastX DNA_Harbinger 359209 359337 34 - . . scaffold531 WUBlastX DNA_Harbinger 359263 359385 37 - . . scaffold531 TRF Tandem_Repeat 361028 361105 156 + . . scaffold531 TRF Tandem_Repeat 387817 387868 95 + . . scaffold531 TRF Tandem_Repeat 388470 388511 84 + . . scaffold531 TRF Tandem_Repeat 389239 389350 118 + . . scaffold532 GLEAN mRNA 55 24194 0.967875 - . ID=CGI_10012519; scaffold532 TRF Tandem_Repeat 7985 8066 164 + . . scaffold532 TRF Tandem_Repeat 10139 10176 67 + . . scaffold532 TRF Tandem_Repeat 16373 16423 93 + . . scaffold532 GLEAN promoter 24195 25194 0.967875 - . ID=CGI_10012519; scaffold532 TRF Tandem_Repeat 24401 24609 193 + . . scaffold532 WUBlastX LINE_Rex-Babar 27062 27262 30 + . . scaffold532 WUBlastX LINE_RTE-X 27095 27265 108 + . . scaffold532 WUBlastX LINE_RTE-X 27122 27274 151 + . . scaffold532 WUBlastX LINE_RTE-X 27271 28206 120 + . . scaffold532 WUBlastX LINE_RTE-X 27271 27693 137 + . . scaffold532 TRF Tandem_Repeat 34107 34268 121 + . . scaffold532 TRF Tandem_Repeat 35365 35813 417 + . . scaffold532 GLEAN promoter 40250 41249 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 40596 40640 72 + . . scaffold532 GLEAN mRNA 41250 59403 0.759605 + . ID=CGI_10012520; scaffold532 TRF Tandem_Repeat 42905 43415 806 + . . scaffold532 TRF Tandem_Repeat 43621 43770 205 + . . scaffold532 TRF Tandem_Repeat 44619 44849 354 + . . scaffold532 TRF Tandem_Repeat 45305 46705 2349 + . . scaffold532 TRF Tandem_Repeat 45306 46708 2382 + . . scaffold532 TRF Tandem_Repeat 47081 47488 238 + . . scaffold532 TRF Tandem_Repeat 47171 47488 262 + . . scaffold532 TRF Tandem_Repeat 47172 47239 55 + . . scaffold532 TRF Tandem_Repeat 49607 50013 642 + . . scaffold532 TRF Tandem_Repeat 51369 52241 1431 + . . scaffold532 TRF Tandem_Repeat 52503 52741 218 + . . scaffold532 GLEAN mRNA 61866 63467 0.794248 - . ID=CGI_10012521; scaffold532 GLEAN promoter 63468 64467 0.794248 - . ID=CGI_10012521; scaffold532 WUBlastX LINE_R2 72682 72783 26 - . . scaffold532 WUBlastX LINE_CR1 72700 73974 1019 - . . scaffold532 WUBlastX LINE_L1 73345 74103 100 - . . scaffold532 WUBlastX LINE_RTE-BovB 74249 74449 24 - . . scaffold532 WUBlastX LINE_CR1 74393 74494 20 - . . scaffold532 TRF Tandem_Repeat 78073 78213 84 + . . scaffold532 TRF Tandem_Repeat 79721 80221 208 + . . scaffold532 GLEAN promoter 81255 82254 0.626081 + . ID=CGI_10012522; scaffold532 GLEAN mRNA 82255 113836 0.626081 + . ID=CGI_10012522; scaffold532 TRF Tandem_Repeat 103108 103174 88 + . . scaffold532 TRF Tandem_Repeat 110811 110856 65 + . . scaffold532 GLEAN promoter 114969 115968 0.996753 + . ID=CGI_10012523; scaffold532 GLEAN mRNA 115969 116247 0.996753 + . ID=CGI_10012523; scaffold532 GLEAN mRNA 116577 121745 0.999114 - . ID=CGI_10012524; scaffold532 GLEAN promoter 121746 122745 0.999114 - . ID=CGI_10012524; scaffold532 GLEAN mRNA 121961 149562 0.948234 - . ID=CGI_10012525; scaffold532 TRF Tandem_Repeat 124827 125144 451 + . . scaffold532 TRF Tandem_Repeat 124961 125497 216 + . . scaffold532 TRF Tandem_Repeat 125071 125551 840 + . . scaffold532 TRF Tandem_Repeat 125153 125442 158 + . . scaffold532 TRF Tandem_Repeat 126069 126192 194 + . . scaffold532 TRF Tandem_Repeat 137109 137471 418 + . . scaffold532 TRF Tandem_Repeat 137109 137428 391 + . . scaffold532 GLEAN promoter 149453 150452 0.999372 + . ID=CGI_10012526; scaffold532 GLEAN promoter 149563 150562 0.948234 - . ID=CGI_10012525; scaffold532 GLEAN mRNA 150453 150782 0.999372 + . ID=CGI_10012526; scaffold532 GLEAN mRNA 151533 152808 0.999999 - . ID=CGI_10012527; scaffold532 GLEAN promoter 152809 153808 0.999999 - . ID=CGI_10012527; scaffold532 GLEAN mRNA 155713 169161 0.907096 - . ID=CGI_10012528; scaffold532 TRF Tandem_Repeat 161810 162119 273 + . . scaffold532 TRF Tandem_Repeat 161810 162121 178 + . . scaffold532 TRF Tandem_Repeat 162548 162816 238 + . . scaffold532 TRF Tandem_Repeat 162552 162816 125 + . . scaffold532 WUBlastX LINE_RTE-X 166086 166289 99 + . . scaffold532 GLEAN promoter 168470 169469 0.999675 + . ID=CGI_10012529; scaffold532 GLEAN promoter 169162 170161 0.907096 - . ID=CGI_10012528; scaffold532 GLEAN mRNA 169470 175242 0.999675 + . ID=CGI_10012529; scaffold532 GLEAN mRNA 178499 180687 1 - . ID=CGI_10012530; scaffold532 GLEAN promoter 180688 181687 1 - . ID=CGI_10012530; scaffold532 GLEAN mRNA 182823 194058 0.989503 - . ID=CGI_10012531; scaffold532 TRF Tandem_Repeat 185917 186179 445 + . . scaffold532 TRF Tandem_Repeat 186179 186387 370 + . . scaffold532 TRF Tandem_Repeat 186207 186300 66 + . . scaffold532 GLEAN promoter 188514 189513 0.991507 + . ID=CGI_10012532; scaffold532 TRF Tandem_Repeat 188899 189165 435 + . . scaffold532 TRF Tandem_Repeat 188915 189008 52 + . . scaffold532 GLEAN mRNA 189514 222678 0.991507 + . ID=CGI_10012532; scaffold532 GLEAN promoter 194059 195058 0.989503 - . ID=CGI_10012531; scaffold532 TRF Tandem_Repeat 196765 197418 859 + . . scaffold532 TRF Tandem_Repeat 207777 208601 1019 + . . scaffold532 TRF Tandem_Repeat 211157 211182 52 + . . scaffold532 TRF Tandem_Repeat 214976 216844 2696 + . . scaffold532 TRF Tandem_Repeat 236647 237396 988 + . . scaffold532 TRF Tandem_Repeat 238972 239461 640 + . . scaffold532 TRF Tandem_Repeat 242845 243868 268 + . . scaffold532 TRF Tandem_Repeat 242871 243867 865 + . . scaffold532 TRF Tandem_Repeat 242873 243838 658 + . . scaffold532 TRF Tandem_Repeat 242983 243838 692 + . . scaffold532 TRF Tandem_Repeat 243123 243867 669 + . . scaffold532 TRF Tandem_Repeat 243670 243868 115 + . . scaffold532 TRF Tandem_Repeat 244735 244759 50 + . . scaffold532 WUBlastX LINE_L1 255826 256269 35 + . . scaffold532 WUBlastX LINE_L2 255898 256308 110 + . . scaffold532 WUBlastX LINE_L2 255916 256398 85 + . . scaffold532 WUBlastX LINE_L1 255967 256308 145 + . . scaffold532 TRF Tandem_Repeat 256413 256472 120 + . . scaffold532 TRF Tandem_Repeat 256951 256989 78 + . . scaffold532 WUBlastX LINE_L1-Tx1 257424 257615 31 - . . scaffold532 TRF Tandem_Repeat 258981 259296 497 + . . scaffold532 TRF Tandem_Repeat 259289 259563 186 + . . scaffold532 WUBlastX DNA_TcMar-Marin 263714 263881 90 + . . scaffold532 WUBlastX DNA_TcMar-Marin 263732 263869 93 + . . scaffold532 TRF Tandem_Repeat 265768 266024 275 + . . scaffold532 GLEAN mRNA 274363 287689 0.998459 - . ID=CGI_10012533; scaffold532 WUBlastX RC_Helitron 278837 281425 1365 - . . scaffold532 WUBlastX RC_Helitron 279344 284014 1444 - . . scaffold532 WUBlastX RC_Helitron 281000 284056 1892 - . . scaffold532 TRF Tandem_Repeat 285626 286007 415 + . . scaffold532 TRF Tandem_Repeat 285751 285883 92 + . . scaffold532 GLEAN promoter 287690 288689 0.998459 - . ID=CGI_10012533; scaffold532 TRF Tandem_Repeat 291756 291795 80 + . . scaffold532 GLEAN promoter 291910 292909 0.991247 + . ID=CGI_10012534; scaffold532 GLEAN mRNA 292910 294767 0.991247 + . ID=CGI_10012534; scaffold532 TRF Tandem_Repeat 295725 295751 54 + . . scaffold532 TRF Tandem_Repeat 295855 295886 55 + . . scaffold532 TRF Tandem_Repeat 295886 295931 92 + . . scaffold532 TRF Tandem_Repeat 298060 298092 66 + . . scaffold533 GLEAN mRNA 160 7409 0.739214 - . ID=CGI_10005553; scaffold533 GLEAN promoter 7410 8409 0.739214 - . ID=CGI_10005553; scaffold533 GLEAN mRNA 20659 21006 0.480389 - . ID=CGI_10005554; scaffold533 GLEAN promoter 21007 22006 0.480389 - . ID=CGI_10005554; scaffold533 WUBlastX DNA_TcMar-Tc1 24928 25119 25 + . . scaffold533 WUBlastX DNA_TcMar-Tc1 24946 25032 29 + . . scaffold533 WUBlastX DNA_TcMar-Tc1 25144 25263 34 + . . scaffold533 WUBlastX DNA_TcMar-Tc1 25369 25494 20 + . . scaffold533 WUBlastX DNA_TcMar-Tc1 25413 25655 67 + . . scaffold533 WUBlastX DNA_TcMar-Tc1 25479 25661 73 + . . scaffold533 WUBlastX DNA_TcMar-Tc1 25479 25709 62 + . . scaffold533 TRF Tandem_Repeat 27088 27118 62 + . . scaffold533 TRF Tandem_Repeat 27116 27152 74 + . . scaffold533 TRF Tandem_Repeat 36033 36282 275 + . . scaffold533 TRF Tandem_Repeat 36033 36321 271 + . . scaffold533 TRF Tandem_Repeat 39486 39958 267 + . . scaffold533 TRF Tandem_Repeat 39989 40114 103 + . . scaffold533 TRF Tandem_Repeat 51148 52760 2094 + . . scaffold533 WUBlastX LTR_Ngaro 56307 56417 26 - . . scaffold533 WUBlastX LTR_Ngaro 56416 56529 28 - . . scaffold533 WUBlastX LTR_Ngaro 56577 56774 24 - . . scaffold533 WUBlastX LTR_Ngaro 58971 59105 67 - . . scaffold533 TRF Tandem_Repeat 60224 60270 69 + . . scaffold533 TRF Tandem_Repeat 62398 64290 2036 + . . scaffold533 WUBlastX LINE_RTE-X 78544 78816 73 - . . scaffold533 WUBlastX LINE_RTE-X 78661 78873 93 - . . scaffold533 WUBlastX LINE_RTE-X 78855 79343 22 - . . scaffold533 WUBlastX LINE_RTE-X 78915 79286 27 - . . scaffold533 WUBlastX LINE_RTE-X 79149 79283 34 - . . scaffold533 GLEAN mRNA 82717 99405 0.998409 - . ID=CGI_10005555; scaffold533 TRF Tandem_Repeat 82816 84284 1806 + . . scaffold533 TRF Tandem_Repeat 84280 84367 59 + . . scaffold533 TRF Tandem_Repeat 84684 85024 371 + . . scaffold533 TRF Tandem_Repeat 85020 85107 59 + . . scaffold533 TRF Tandem_Repeat 86154 86886 851 + . . scaffold533 WUBlastX LINE_L1 91309 91344 20 + . . scaffold533 WUBlastX LINE_DRE 92187 92999 64 + . . scaffold533 WUBlastX LINE_L2 92328 94181 1207 + . . scaffold533 TRF Tandem_Repeat 95659 95833 350 + . . scaffold533 WUBlastX LINE_L2 95960 96691 94 + . . scaffold533 WUBlastX LINE_CR1-L2 96089 96688 201 + . . scaffold533 WUBlastX LINE_L2 96194 97054 449 + . . scaffold533 WUBlastX LINE_L1-Tx1 98043 98252 55 - . . scaffold533 WUBlastX LINE_L1-Tx1 98254 98535 32 - . . scaffold533 WUBlastX LINE_L1-Tx1 98266 98493 44 - . . scaffold533 WUBlastX LINE_L1 98269 98457 67 - . . scaffold533 GLEAN promoter 99406 100405 0.998409 - . ID=CGI_10005555; scaffold533 GLEAN promoter 105602 106601 0.411141 + . ID=CGI_10005556; scaffold533 GLEAN mRNA 106602 128688 0.411141 + . ID=CGI_10005556; scaffold533 TRF Tandem_Repeat 116784 117079 325 + . . scaffold533 TRF Tandem_Repeat 128084 128167 159 + . . scaffold533 WUBlastX LINE_RTE-X 128936 129358 79 + . . scaffold533 WUBlastX LINE_RTE-X 129173 129409 72 + . . scaffold534 GLEAN mRNA 930 8013 1 - . ID=CGI_10005162; scaffold534 WUBlastX DNA_TcMar-Marin 3639 3821 51 + . . scaffold534 TRF Tandem_Repeat 4294 4326 57 + . . scaffold534 GLEAN promoter 8014 9013 1 - . ID=CGI_10005162; scaffold534 TRF Tandem_Repeat 8160 8209 100 + . . scaffold534 TRF Tandem_Repeat 8497 8569 116 + . . scaffold534 WUBlastX DNA_Sola 15087 16112 370 - . . scaffold534 WUBlastX DNA_Sola 15798 16232 76 - . . scaffold534 TRF Tandem_Repeat 22460 22498 78 + . . scaffold534 TRF Tandem_Repeat 26683 26733 95 + . . scaffold534 TRF Tandem_Repeat 34144 34182 78 + . . scaffold534 TRF Tandem_Repeat 39712 39758 76 + . . scaffold534 TRF Tandem_Repeat 39716 39765 82 + . . scaffold534 TRF Tandem_Repeat 39769 40606 1182 + . . scaffold534 WUBlastX LTR_Gypsy 41714 42286 110 + . . scaffold534 WUBlastX LTR_Gypsy 41885 42673 140 + . . scaffold534 WUBlastX LTR_Gypsy 42805 43647 134 + . . scaffold534 WUBlastX LTR_Gypsy 42916 43611 227 + . . scaffold534 WUBlastX LTR_Gypsy-Cigr 43744 43938 71 + . . scaffold534 WUBlastX LTR_Gypsy 46887 46982 25 + . . scaffold534 WUBlastX LTR_Gypsy 47161 47394 188 + . . scaffold534 WUBlastX LTR_Gypsy-Cigr 47203 47394 215 + . . scaffold534 WUBlastX LTR_Gypsy 47206 47472 199 + . . scaffold534 WUBlastX LTR_Gypsy 47206 47535 149 + . . scaffold534 WUBlastX LTR_Gypsy-Cigr 47380 47727 144 + . . scaffold534 GLEAN promoter 52644 53643 0.99917 + . ID=CGI_10005163; scaffold534 GLEAN mRNA 53644 59866 0.99917 + . ID=CGI_10005163; scaffold534 GLEAN promoter 65095 66094 0.716363 + . ID=CGI_10005164; scaffold534 GLEAN mRNA 66095 75550 0.716363 + . ID=CGI_10005164; scaffold534 GLEAN mRNA 66292 67072 0.895698 - . ID=CGI_10005165; scaffold534 GLEAN promoter 67073 68072 0.895698 - . ID=CGI_10005165; scaffold534 WUBlastX LTR_ERV1 67151 67840 97 - . . scaffold534 WUBlastX LTR_Gypsy 67262 67864 341 - . . scaffold534 WUBlastX LTR_Gypsy 67864 68220 113 - . . scaffold534 WUBlastX LTR_Gypsy-Cigr 67870 68166 214 - . . scaffold534 WUBlastX LTR_Gypsy 67906 68277 68 - . . scaffold534 WUBlastX LTR_Gypsy 69532 69690 32 - . . scaffold534 WUBlastX LTR_Gypsy-Cigr 69574 70653 447 - . . scaffold534 WUBlastX LTR_Gypsy 70072 70656 490 - . . scaffold534 WUBlastX LTR_Gypsy 70756 71541 309 - . . scaffold534 WUBlastX LTR_Gypsy 70837 71496 563 - . . scaffold534 WUBlastX LTR_Gypsy 71444 72352 114 - . . scaffold534 WUBlastX LTR_Gypsy-Cigr 71501 72514 59 - . . scaffold534 WUBlastX LINE_L1-Tx1 73828 74352 168 + . . scaffold534 WUBlastX LINE_L1-Tx1 74255 75427 139 + . . scaffold534 TRF Tandem_Repeat 76595 76681 88 + . . scaffold534 TRF Tandem_Repeat 77042 77191 138 + . . scaffold534 TRF Tandem_Repeat 77472 77638 129 + . . scaffold534 TRF Tandem_Repeat 78820 78879 93 + . . scaffold534 GLEAN mRNA 88221 88451 0.999372 - . ID=CGI_10005166; scaffold534 GLEAN promoter 88452 89451 0.999372 - . ID=CGI_10005166; scaffold534 GLEAN promoter 89706 90705 0.548935 + . ID=CGI_10005167; scaffold534 GLEAN mRNA 90706 91560 0.548935 + . ID=CGI_10005167; scaffold534 WUBlastX DNA_TcMar-Tc1 111157 111381 72 - . . scaffold534 WUBlastX DNA_TcMar-Tc1 111223 111408 88 - . . scaffold534 WUBlastX DNA_TcMar-Tc1 111229 111372 94 - . . scaffold534 WUBlastX DNA_TcMar-Tc1 111491 111727 30 - . . scaffold534 WUBlastX DNA_hAT-Tip100 112931 113353 73 + . . scaffold534 WUBlastX DNA_hAT-Tip100 113000 113338 103 + . . scaffold534 WUBlastX DNA_hAT-Tip100 113356 113916 328 + . . scaffold534 WUBlastX DNA_hAT-Tip100 113728 114036 42 + . . scaffold534 WUBlastX DNA_hAT-Tip100 113976 114680 133 + . . scaffold534 WUBlastX DNA_hAT-Tip100 114513 114731 51 + . . scaffold535 GLEAN promoter 1 108 0.491277 + . ID=CGI_10020280; scaffold535 GLEAN mRNA 109 7288 0.491277 + . ID=CGI_10020280; scaffold535 WUBlastX DNA_IS4EU 2812 3006 28 + . . scaffold535 WUBlastX DNA_IS4EU 2848 2949 30 + . . scaffold535 WUBlastX DNA_IS4EU 3215 3352 20 + . . scaffold535 WUBlastX DNA_IS4EU 3227 3325 23 + . . scaffold535 WUBlastX DNA_IS4EU 3753 3890 59 + . . scaffold535 WUBlastX DNA_IS4EU 3963 4175 24 + . . scaffold535 WUBlastX DNA_IS4EU 4002 4181 50 + . . scaffold535 WUBlastX DNA_IS4EU 4134 5012 204 - . . scaffold535 WUBlastX DNA_IS4EU 4266 4967 372 - . . scaffold535 WUBlastX LTR_DIRS 8346 8720 84 + . . scaffold535 WUBlastX LTR_DIRS 8424 8717 103 + . . scaffold535 WUBlastX LTR_DIRS 8704 10080 427 + . . scaffold535 WUBlastX LTR_DIRS 10080 10172 49 + . . scaffold535 WUBlastX LTR_DIRS 10319 10438 59 + . . scaffold535 WUBlastX LTR_DIRS 10444 10581 26 + . . scaffold535 WUBlastX LTR_DIRS 10465 10599 64 + . . scaffold535 WUBlastX LTR_DIRS 10557 10808 131 + . . scaffold535 WUBlastX LTR_DIRS 10593 11102 126 + . . scaffold535 TRF Tandem_Repeat 13089 13167 65 + . . scaffold535 TRF Tandem_Repeat 17811 17860 57 + . . scaffold535 WUBlastX LTR_Ngaro 19369 19587 24 + . . scaffold535 WUBlastX LTR_Ngaro 19411 19578 25 + . . scaffold535 WUBlastX LTR_Ngaro 19575 19766 120 + . . scaffold535 WUBlastX LTR_Ngaro 20027 20641 293 + . . scaffold535 WUBlastX LTR_Ngaro 20541 20687 43 + . . scaffold535 WUBlastX LTR_Ngaro 20541 20717 39 + . . scaffold535 TRF Tandem_Repeat 26177 26210 68 + . . scaffold535 GLEAN mRNA 26300 40729 0.999612 - . ID=CGI_10020281; scaffold535 TRF Tandem_Repeat 39920 39963 88 + . . scaffold535 GLEAN promoter 40730 41729 0.999612 - . ID=CGI_10020281; scaffold535 WUBlastX LINE_L1 41312 41452 21 + . . scaffold535 WUBlastX LINE_L1-Tx1 41381 44806 886 + . . scaffold535 TRF Tandem_Repeat 50816 50868 106 + . . scaffold535 TRF Tandem_Repeat 59741 60510 868 + . . scaffold535 WUBlastX DNA_TcMar-Fot1 66648 66983 109 + . . scaffold535 WUBlastX DNA_TcMar-Fot1 66980 67237 124 + . . scaffold535 WUBlastX DNA_TcMar-Fot1 67219 67932 67 + . . scaffold535 WUBlastX DNA_TcMar-Fot1 67234 67623 129 + . . scaffold535 TRF Tandem_Repeat 68557 68605 98 + . . scaffold535 GLEAN promoter 70768 71767 0.999999 + . ID=CGI_10020282; scaffold535 GLEAN mRNA 71768 99413 0.999999 + . ID=CGI_10020282; scaffold535 TRF Tandem_Repeat 91613 91674 54 + . . scaffold535 TRF Tandem_Repeat 91613 91674 54 + . . scaffold535 TRF Tandem_Repeat 91614 91655 50 + . . scaffold535 GLEAN promoter 110373 111372 0.592399 + . ID=CGI_10020283; scaffold535 GLEAN mRNA 111373 154699 0.592399 + . ID=CGI_10020283; scaffold535 TRF Tandem_Repeat 111718 111769 104 + . . scaffold535 TRF Tandem_Repeat 115194 116097 1016 + . . scaffold535 WUBlastX DNA_TcMar-Tc1 116665 116853 42 + . . scaffold535 WUBlastX DNA_TcMar-Tc1 116844 116948 44 + . . scaffold535 WUBlastX DNA_TcMar-Tc1 116865 117125 50 + . . scaffold535 WUBlastX DNA_TcMar-Tc1 117066 117137 51 + . . scaffold535 TRF Tandem_Repeat 123225 123268 88 + . . scaffold535 TRF Tandem_Repeat 142716 142757 52 + . . scaffold535 TRF Tandem_Repeat 142930 145080 2402 + . . scaffold535 TRF Tandem_Repeat 154350 154389 50 + . . scaffold535 TRF Tandem_Repeat 155451 155540 87 + . . scaffold535 GLEAN promoter 157110 158109 0.999251 + . ID=CGI_10020284; scaffold535 GLEAN mRNA 158110 184507 0.999251 + . ID=CGI_10020284; scaffold535 TRF Tandem_Repeat 163238 163271 52 + . . scaffold535 TRF Tandem_Repeat 163459 163525 80 + . . scaffold535 WUBlastX LINE_L1-Tx1 165614 169306 1353 + . . scaffold535 WUBlastX LINE_L1-Tx1 166325 169327 1379 + . . scaffold535 TRF Tandem_Repeat 177133 177302 189 + . . scaffold535 TRF Tandem_Repeat 186594 186618 50 + . . scaffold535 TRF Tandem_Repeat 191800 191893 152 + . . scaffold535 TRF Tandem_Repeat 193193 193452 283 + . . scaffold535 TRF Tandem_Repeat 193219 193448 334 + . . scaffold535 TRF Tandem_Repeat 202412 202447 54 + . . scaffold535 GLEAN mRNA 202645 209712 0.527373 - . ID=CGI_10020285; scaffold535 TRF Tandem_Repeat 205910 206273 577 + . . scaffold535 GLEAN promoter 209531 210530 0.999993 + . ID=CGI_10020286; scaffold535 GLEAN promoter 209713 210712 0.527373 - . ID=CGI_10020285; scaffold535 GLEAN mRNA 210531 219917 0.999993 + . ID=CGI_10020286; scaffold535 TRF Tandem_Repeat 215332 215407 152 + . . scaffold535 TRF Tandem_Repeat 217222 217255 68 + . . scaffold535 WUBlastX LINE_RTE-X 220607 220897 82 + . . scaffold535 WUBlastX LINE_RTE-X 220607 221008 55 + . . scaffold535 TRF Tandem_Repeat 222579 222620 84 + . . scaffold535 GLEAN mRNA 228008 232751 1 - . ID=CGI_10020287; scaffold535 GLEAN promoter 232752 233751 1 - . ID=CGI_10020287; scaffold535 TRF Tandem_Repeat 236085 236151 134 + . . scaffold535 TRF Tandem_Repeat 236178 236209 64 + . . scaffold535 GLEAN mRNA 239931 254097 0.999949 - . ID=CGI_10020288; scaffold535 TRF Tandem_Repeat 248933 248988 112 + . . scaffold535 GLEAN promoter 254098 255097 0.999949 - . ID=CGI_10020288; scaffold535 WUBlastX LTR_DIRS 265302 265571 81 - . . scaffold535 WUBlastX LTR_DIRS 265722 266105 33 - . . scaffold535 WUBlastX LTR_DIRS 266289 268406 209 - . . scaffold535 WUBlastX LTR_DIRS 266589 268271 270 - . . scaffold535 TRF Tandem_Repeat 270687 270722 72 + . . scaffold535 TRF Tandem_Repeat 273941 273984 88 + . . scaffold535 TRF Tandem_Repeat 283906 283943 67 + . . scaffold535 WUBlastX LTR_Gypsy 286354 287124 390 + . . scaffold535 WUBlastX LTR_Gypsy 286408 287325 77 + . . scaffold535 WUBlastX LTR_Gypsy 287409 287705 22 + . . scaffold535 WUBlastX LTR_Gypsy 287454 290309 2337 + . . scaffold535 WUBlastX LTR_Gypsy 290305 290877 511 + . . scaffold535 WUBlastX LTR_Gypsy 290832 291281 205 + . . scaffold535 WUBlastX DNA_Sola 295198 295305 47 - . . scaffold535 GLEAN mRNA 295872 296797 0.623962 - . ID=CGI_10020289; scaffold535 GLEAN promoter 296798 297797 0.623962 - . ID=CGI_10020289; scaffold535 TRF Tandem_Repeat 296980 297029 73 + . . scaffold535 WUBlastX LTR_Gypsy-Cigr 300724 301155 208 - . . scaffold535 WUBlastX LTR_Gypsy 301160 301330 186 - . . scaffold535 WUBlastX LTR_Gypsy 301332 301697 290 - . . scaffold535 WUBlastX LTR_Gypsy-Cigr 301679 302263 248 - . . scaffold535 WUBlastX LTR_Gypsy 302263 302538 134 - . . scaffold535 TRF Tandem_Repeat 305804 305847 88 + . . scaffold535 TRF Tandem_Repeat 307439 307464 52 + . . scaffold535 TRF Tandem_Repeat 307823 307874 77 + . . scaffold535 WUBlastX LTR_Gypsy 308917 309039 20 + . . scaffold535 WUBlastX LTR_Gypsy 309013 309063 22 + . . scaffold535 WUBlastX LTR_Gypsy 309598 311316 1362 + . . scaffold535 TRF Tandem_Repeat 323248 324352 1544 + . . scaffold535 TRF Tandem_Repeat 324599 324653 56 + . . scaffold535 TRF Tandem_Repeat 324603 324649 67 + . . scaffold535 GLEAN promoter 326506 327505 0.688432 + . ID=CGI_10020290; scaffold535 TRF Tandem_Repeat 327284 327344 67 + . . scaffold535 TRF Tandem_Repeat 327301 327343 50 + . . scaffold535 GLEAN mRNA 327506 352221 0.688432 + . ID=CGI_10020290; scaffold535 TRF Tandem_Repeat 328232 328272 82 + . . scaffold535 TRF Tandem_Repeat 329680 329983 365 + . . scaffold535 TRF Tandem_Repeat 335115 335158 88 + . . scaffold535 TRF Tandem_Repeat 351972 352010 78 + . . scaffold535 TRF Tandem_Repeat 370879 371185 460 + . . scaffold535 GLEAN promoter 374292 375291 1 + . ID=CGI_10020291; scaffold535 GLEAN mRNA 375292 380251 1 + . ID=CGI_10020291; scaffold535 GLEAN promoter 401990 402989 0.993789 + . ID=CGI_10020292; scaffold535 GLEAN mRNA 402990 410057 0.993789 + . ID=CGI_10020292; scaffold535 TRF Tandem_Repeat 420129 420354 246 + . . scaffold535 WUBlastX LINE_RTE-X 437148 437393 27 + . . scaffold535 WUBlastX LINE_RTE-X 437196 437324 64 + . . scaffold535 TRF Tandem_Repeat 440075 440236 243 + . . scaffold535 GLEAN promoter 441316 442315 0.999613 + . ID=CGI_10020294; scaffold535 GLEAN mRNA 442316 455898 0.999613 + . ID=CGI_10020294; scaffold535 TRF Tandem_Repeat 453809 454131 405 + . . scaffold535 GLEAN mRNA 461042 476370 0.905842 - . ID=CGI_10020295; scaffold535 TRF Tandem_Repeat 461207 461454 392 + . . scaffold535 TRF Tandem_Repeat 463477 463531 67 + . . scaffold535 TRF Tandem_Repeat 463494 463539 58 + . . scaffold535 TRF Tandem_Repeat 472548 472583 72 + . . scaffold535 TRF Tandem_Repeat 473087 473216 233 + . . scaffold535 GLEAN promoter 476371 477370 0.905842 - . ID=CGI_10020295; scaffold535 TRF Tandem_Repeat 481915 481994 142 + . . scaffold535 GLEAN promoter 482797 483796 0.960286 + . ID=CGI_10020296; scaffold535 GLEAN mRNA 483797 492555 0.960286 + . ID=CGI_10020296; scaffold535 TRF Tandem_Repeat 486392 486472 162 + . . scaffold535 TRF Tandem_Repeat 486538 486590 99 + . . scaffold535 TRF Tandem_Repeat 486785 486819 70 + . . scaffold535 TRF Tandem_Repeat 497624 497648 50 + . . scaffold535 GLEAN mRNA 500982 522518 1 - . ID=CGI_10020297; scaffold535 TRF Tandem_Repeat 501435 501478 88 + . . scaffold535 TRF Tandem_Repeat 503863 503898 72 + . . scaffold535 TRF Tandem_Repeat 506220 506528 438 + . . scaffold535 TRF Tandem_Repeat 506245 506522 439 + . . scaffold535 TRF Tandem_Repeat 506816 508193 1991 + . . scaffold535 GLEAN promoter 522519 523518 1 - . ID=CGI_10020297; scaffold535 TRF Tandem_Repeat 524221 525257 1438 + . . scaffold535 TRF Tandem_Repeat 526524 526640 72 + . . scaffold535 TRF Tandem_Repeat 532623 532773 205 + . . scaffold535 TRF Tandem_Repeat 536312 536377 132 + . . scaffold535 TRF Tandem_Repeat 536414 536461 69 + . . scaffold535 TRF Tandem_Repeat 540957 541000 88 + . . scaffold535 WUBlastX DNA_IS4EU 552590 553333 350 - . . scaffold535 GLEAN promoter 553723 554722 0.593509 + . ID=CGI_10020298; scaffold535 GLEAN mRNA 554723 554890 0.593509 + . ID=CGI_10020298; scaffold535 GLEAN promoter 555071 556070 0.477113 + . ID=CGI_10020299; scaffold535 GLEAN mRNA 556071 562996 0.477113 + . ID=CGI_10020299; scaffold535 WUBlastX LTR_Copia 556185 556580 22 + . . scaffold535 WUBlastX LTR_Copia 556233 556478 28 + . . scaffold535 WUBlastX LTR_Copia 556338 556538 36 + . . scaffold535 WUBlastX LTR_Gypsy 556650 556775 32 + . . scaffold535 WUBlastX LTR_Copia 556749 556955 34 + . . scaffold535 WUBlastX LTR_Gypsy 557243 558085 403 + . . scaffold535 WUBlastX LTR_Gypsy 557243 558244 303 + . . scaffold535 WUBlastX LTR_Gypsy 558487 558741 49 + . . scaffold535 WUBlastX LTR_Gypsy 559381 559530 50 + . . scaffold535 GLEAN promoter 562156 563155 0.999367 + . ID=CGI_10020300; scaffold535 TRF Tandem_Repeat 562307 562339 57 + . . scaffold535 GLEAN promoter 562508 563507 0.883286 + . ID=CGI_10020301; scaffold535 GLEAN mRNA 563156 563392 0.999367 + . ID=CGI_10020300; scaffold535 GLEAN mRNA 563508 572309 0.883286 + . ID=CGI_10020301; scaffold535 WUBlastX LINE_CR1-L2 565628 565780 26 + . . scaffold535 WUBlastX LINE_CR1-L2 565655 565786 40 + . . scaffold535 WUBlastX LINE_L2 565703 565780 45 + . . scaffold535 WUBlastX LINE_CR1-L2 565767 566633 75 + . . scaffold535 WUBlastX LINE_CR1-L2 565996 566232 157 + . . scaffold535 WUBlastX LINE_L2 566232 566645 131 + . . scaffold535 WUBlastX LINE_L2 566627 566806 49 + . . scaffold535 TRF Tandem_Repeat 573144 573207 128 + . . scaffold535 WUBlastX LINE_RTE-X 576198 576365 70 + . . scaffold535 WUBlastX LINE_RTE-X 576374 576736 70 + . . scaffold535 WUBlastX LINE_RTE-X 576736 576882 57 + . . scaffold535 TRF Tandem_Repeat 581412 581589 60 + . . scaffold535 WUBlastX LINE_RTE-X 582120 582485 83 - . . scaffold535 WUBlastX LINE_RTE-X 582210 583334 155 - . . scaffold535 WUBlastX LINE_RTE-X 582906 583274 226 - . . scaffold535 WUBlastX LINE_R1 584071 584196 24 - . . scaffold535 TRF Tandem_Repeat 584567 584657 148 + . . scaffold535 GLEAN promoter 590397 591396 1 + . ID=CGI_10020302; scaffold535 GLEAN mRNA 591397 593585 1 + . ID=CGI_10020302; scaffold535 TRF Tandem_Repeat 593297 593327 53 + . . scaffold535 WUBlastX LINE_RTE-X 598017 599462 477 + . . scaffold535 TRF Tandem_Repeat 601100 601194 120 + . . scaffold535 TRF Tandem_Repeat 605314 606396 1383 + . . scaffold535 GLEAN mRNA 607916 625607 0.447662 - . ID=CGI_10020303; scaffold535 GLEAN promoter 625608 626607 0.447662 - . ID=CGI_10020303; scaffold535 GLEAN promoter 626162 627161 1 + . ID=CGI_10020304; scaffold535 GLEAN mRNA 627162 628232 1 + . ID=CGI_10020304; scaffold535 WUBlastX DNA_hAT 636481 638091 509 - . . scaffold535 TRF Tandem_Repeat 642073 642111 78 + . . scaffold536 GLEAN promoter 3555 4554 1 + . ID=CGI_10006663; scaffold536 GLEAN mRNA 4555 7680 1 + . ID=CGI_10006663; scaffold536 GLEAN mRNA 9032 12426 0.996819 - . ID=CGI_10006664; scaffold536 GLEAN promoter 12403 13402 0.98571 + . ID=CGI_10006665; scaffold536 GLEAN promoter 12427 13426 0.996819 - . ID=CGI_10006664; scaffold536 GLEAN mRNA 13403 16386 0.98571 + . ID=CGI_10006665; scaffold536 TRF Tandem_Repeat 17386 17419 59 + . . scaffold536 TRF Tandem_Repeat 20956 20980 50 + . . scaffold536 TRF Tandem_Repeat 21166 21216 50 + . . scaffold536 TRF Tandem_Repeat 21173 21216 54 + . . scaffold536 WUBlastX LINE_RTE-X 21261 21785 131 - . . scaffold536 GLEAN promoter 23784 24783 0.983791 + . ID=CGI_10006666; scaffold536 TRF Tandem_Repeat 24673 24724 104 + . . scaffold536 GLEAN mRNA 24784 27948 0.983791 + . ID=CGI_10006666; scaffold536 GLEAN mRNA 32225 46229 0.999351 - . ID=CGI_10006667; scaffold536 GLEAN promoter 46230 47229 0.999351 - . ID=CGI_10006667; scaffold536 TRF Tandem_Repeat 46969 47005 74 + . . scaffold536 TRF Tandem_Repeat 48066 48990 781 + . . scaffold536 TRF Tandem_Repeat 48066 48965 662 + . . scaffold536 GLEAN mRNA 51344 51841 0.99957 - . ID=CGI_10006668; scaffold536 GLEAN promoter 51842 52841 0.99957 - . ID=CGI_10006668; scaffold536 TRF Tandem_Repeat 55208 55249 84 + . . scaffold536 GLEAN mRNA 57629 68613 0.998859 - . ID=CGI_10006669; scaffold536 GLEAN promoter 67482 68481 0.999348 + . ID=CGI_10006670; scaffold536 GLEAN mRNA 68482 93233 0.999348 + . ID=CGI_10006670; scaffold536 GLEAN promoter 68614 69613 0.998859 - . ID=CGI_10006669; scaffold536 TRF Tandem_Repeat 68697 68736 80 + . . scaffold536 GLEAN mRNA 78077 83324 0.999922 - . ID=CGI_10006671; scaffold536 GLEAN promoter 83325 84324 0.999922 - . ID=CGI_10006671; scaffold536 WUBlastX LINE_RTE-X 85517 85687 23 - . . scaffold536 WUBlastX LINE_RTE-X 85710 85763 31 - . . scaffold536 WUBlastX LINE_RTE-X 85710 85781 22 - . . scaffold536 WUBlastX LINE_RTE-X 85795 86067 21 - . . scaffold536 WUBlastX LINE_RTE-X 85992 86513 66 - . . scaffold536 WUBlastX LINE_RTE-X 86189 86617 50 - . . scaffold536 WUBlastX LINE_RTE-X 86298 86546 93 - . . scaffold536 WUBlastX LINE_RTE-X 86304 86513 97 - . . scaffold536 WUBlastX LINE_RTE-X 88249 88494 48 + . . scaffold536 WUBlastX LINE_RTE-X 88327 88494 56 + . . scaffold536 WUBlastX LINE_RTE-X 88569 88640 33 + . . scaffold536 WUBlastX LINE_CR1-L2 88636 88749 47 + . . scaffold536 WUBlastX LINE_L2 88669 88875 70 + . . scaffold536 WUBlastX LINE_L2 88776 89441 93 + . . scaffold536 WUBlastX LINE_CR1-L2 89611 89673 20 + . . scaffold536 TRF Tandem_Repeat 94223 94440 249 + . . scaffold536 TRF Tandem_Repeat 94231 94437 218 + . . scaffold536 GLEAN promoter 94916 95915 1 + . ID=CGI_10006672; scaffold536 GLEAN mRNA 95916 101914 1 + . ID=CGI_10006672; scaffold536 TRF Tandem_Repeat 96710 96736 54 + . . scaffold536 TRF Tandem_Repeat 106366 106470 192 + . . scaffold536 GLEAN mRNA 106506 117959 0.999989 - . ID=CGI_10006673; scaffold536 GLEAN promoter 117960 118959 0.999989 - . ID=CGI_10006673; scaffold536 WUBlastX LINE_Penelope 118126 118839 204 - . . scaffold536 GLEAN mRNA 118885 128815 0.651045 - . ID=CGI_10006674; scaffold536 TRF Tandem_Repeat 127320 127383 128 + . . scaffold536 TRF Tandem_Repeat 128386 128431 65 + . . scaffold536 GLEAN promoter 128816 129815 0.651045 - . ID=CGI_10006674; scaffold536 TRF Tandem_Repeat 130558 130632 141 + . . scaffold536 WUBlastX LINE_Penelope 131256 131876 94 + . . scaffold536 WUBlastX LINE_Penelope 131439 132920 513 + . . scaffold536 WUBlastX LINE_Penelope 132642 133067 58 + . . scaffold536 TRF Tandem_Repeat 134785 134845 122 + . . scaffold536 GLEAN mRNA 145882 148658 0.517978 - . ID=CGI_10006675; scaffold536 GLEAN promoter 148659 149658 0.517978 - . ID=CGI_10006675; scaffold536 TRF Tandem_Repeat 152050 152083 68 + . . scaffold54 TRF Tandem_Repeat 21883 21915 57 + . . scaffold54 TRF Tandem_Repeat 26776 27086 338 + . . scaffold54 TRF Tandem_Repeat 26780 27086 400 + . . scaffold54 TRF Tandem_Repeat 33773 33830 116 + . . scaffold54 TRF Tandem_Repeat 45561 45599 78 + . . scaffold54 TRF Tandem_Repeat 46950 46976 54 + . . scaffold54 TRF Tandem_Repeat 47039 47087 62 + . . scaffold54 TRF Tandem_Repeat 47139 47203 94 + . . scaffold54 TRF Tandem_Repeat 47257 47302 62 + . . scaffold54 GLEAN mRNA 56484 61358 1 - . ID=CGI_10023652; scaffold54 GLEAN promoter 61359 62358 1 - . ID=CGI_10023652; scaffold54 TRF Tandem_Repeat 62825 62907 166 + . . scaffold54 TRF Tandem_Repeat 66144 66187 88 + . . scaffold54 TRF Tandem_Repeat 67830 67872 86 + . . scaffold54 GLEAN promoter 70574 71573 0.999676 + . ID=CGI_10023653; scaffold54 GLEAN mRNA 71574 77955 0.999676 + . ID=CGI_10023653; scaffold54 GLEAN promoter 78485 79484 0.939929 + . ID=CGI_10023654; scaffold54 GLEAN mRNA 79485 84388 0.939929 + . ID=CGI_10023654; scaffold54 WUBlastX LTR_Gypsy 79644 79787 20 + . . scaffold54 WUBlastX LTR_Gypsy-Cigr 79803 80291 151 + . . scaffold54 WUBlastX LTR_Gypsy 79935 80495 54 + . . scaffold54 WUBlastX LTR_Gypsy 80470 80832 65 + . . scaffold54 WUBlastX LTR_Gypsy 80614 80853 79 + . . scaffold54 WUBlastX LTR_Gypsy 80695 80889 61 + . . scaffold54 WUBlastX LTR_Gypsy 80867 81151 48 + . . scaffold54 WUBlastX LTR_Gypsy 81199 81288 31 + . . scaffold54 WUBlastX LTR_Gypsy 81217 81615 137 + . . scaffold54 WUBlastX LTR_Gypsy 81609 83135 946 + . . scaffold54 WUBlastX LTR_Gypsy-Cigr 83087 83428 115 + . . scaffold54 WUBlastX LTR_Gypsy-Cigr 83135 83347 136 + . . scaffold54 WUBlastX LTR_ERV1 83353 83544 46 + . . scaffold54 WUBlastX LTR_Gypsy 83356 83499 71 + . . scaffold54 WUBlastX LTR_Gypsy 83356 83460 89 + . . scaffold54 GLEAN promoter 85464 86463 1 + . ID=CGI_10023655; scaffold54 GLEAN mRNA 86464 97737 1 + . ID=CGI_10023655; scaffold54 WUBlastX LINE_L1-Tx1 89700 90101 32 + . . scaffold54 WUBlastX LINE_L1-Tx1 89706 89984 38 + . . scaffold54 GLEAN mRNA 97641 114427 0.913971 - . ID=CGI_10023656; scaffold54 TRF Tandem_Repeat 101605 101689 170 + . . scaffold54 TRF Tandem_Repeat 105358 105405 51 + . . scaffold54 TRF Tandem_Repeat 105358 105405 59 + . . scaffold54 GLEAN promoter 114428 115427 0.913971 - . ID=CGI_10023656; scaffold54 GLEAN promoter 114874 115873 1 + . ID=CGI_10023657; scaffold54 GLEAN mRNA 115874 120683 1 + . ID=CGI_10023657; scaffold54 TRF Tandem_Repeat 120255 120294 80 + . . scaffold54 GLEAN mRNA 121502 140992 0.957404 - . ID=CGI_10023658; scaffold54 TRF Tandem_Repeat 125931 125986 112 + . . scaffold54 TRF Tandem_Repeat 126756 126802 94 + . . scaffold54 TRF Tandem_Repeat 138062 138131 140 + . . scaffold54 GLEAN promoter 139998 140997 0.993364 + . ID=CGI_10023659; scaffold54 GLEAN promoter 140993 141992 0.957404 - . ID=CGI_10023658; scaffold54 GLEAN mRNA 140998 143933 0.993364 + . ID=CGI_10023659; scaffold54 GLEAN promoter 146210 147209 0.996557 + . ID=CGI_10023660; scaffold54 GLEAN mRNA 147210 157088 0.996557 + . ID=CGI_10023660; scaffold54 TRF Tandem_Repeat 153658 153691 68 + . . scaffold54 GLEAN mRNA 157601 180915 0.993109 - . ID=CGI_10023661; scaffold54 TRF Tandem_Repeat 173159 173237 113 + . . scaffold54 GLEAN promoter 180462 181461 0.996564 + . ID=CGI_10023662; scaffold54 GLEAN promoter 180916 181915 0.993109 - . ID=CGI_10023661; scaffold54 GLEAN mRNA 181462 181710 0.996564 + . ID=CGI_10023662; scaffold54 GLEAN promoter 181692 182691 0.996533 + . ID=CGI_10023663; scaffold54 GLEAN mRNA 182692 184748 0.996533 + . ID=CGI_10023663; scaffold54 TRF Tandem_Repeat 185180 185232 106 + . . scaffold54 TRF Tandem_Repeat 186744 186790 94 + . . scaffold54 TRF Tandem_Repeat 187743 187937 309 + . . scaffold54 TRF Tandem_Repeat 192859 192891 66 + . . scaffold54 TRF Tandem_Repeat 195033 195087 101 + . . scaffold54 GLEAN promoter 198613 199612 0.993838 + . ID=CGI_10023664; scaffold54 GLEAN mRNA 199613 201685 0.993838 + . ID=CGI_10023664; scaffold54 GLEAN promoter 207451 208450 0.995373 + . ID=CGI_10023665; scaffold54 TRF Tandem_Repeat 208296 208320 50 + . . scaffold54 GLEAN mRNA 208451 212677 0.995373 + . ID=CGI_10023665; scaffold54 TRF Tandem_Repeat 209258 209327 131 + . . scaffold54 TRF Tandem_Repeat 212425 212483 118 + . . scaffold54 GLEAN mRNA 215499 217535 0.999676 - . ID=CGI_10023666; scaffold54 GLEAN promoter 217536 218535 0.999676 - . ID=CGI_10023666; scaffold54 GLEAN promoter 217631 218630 0.994488 + . ID=CGI_10023667; scaffold54 GLEAN mRNA 218631 228398 0.994488 + . ID=CGI_10023667; scaffold54 TRF Tandem_Repeat 226655 227008 528 + . . scaffold54 TRF Tandem_Repeat 227623 227901 234 + . . scaffold54 TRF Tandem_Repeat 227634 227893 263 + . . scaffold54 GLEAN mRNA 228253 228480 0.776794 - . ID=CGI_10023668; scaffold54 GLEAN promoter 228481 229480 0.776794 - . ID=CGI_10023668; scaffold54 TRF Tandem_Repeat 232274 232312 78 + . . scaffold54 GLEAN promoter 235741 236740 1 + . ID=CGI_10023669; scaffold54 GLEAN mRNA 236741 244207 1 + . ID=CGI_10023669; scaffold54 GLEAN promoter 243986 244985 0.770873 + . ID=CGI_10023670; scaffold54 GLEAN mRNA 244986 246873 0.770873 + . ID=CGI_10023670; scaffold54 TRF Tandem_Repeat 250762 250848 106 + . . scaffold54 TRF Tandem_Repeat 251075 251312 269 + . . scaffold54 TRF Tandem_Repeat 251347 251563 224 + . . scaffold54 TRF Tandem_Repeat 251852 252034 152 + . . scaffold54 TRF Tandem_Repeat 255930 255983 108 + . . scaffold54 GLEAN mRNA 256700 257630 1 - . ID=CGI_10023671; scaffold54 GLEAN promoter 257631 258630 1 - . ID=CGI_10023671; scaffold54 TRF Tandem_Repeat 265414 265589 158 + . . scaffold54 TRF Tandem_Repeat 268737 268795 73 + . . scaffold54 TRF Tandem_Repeat 272121 272170 100 + . . scaffold54 GLEAN mRNA 273230 276432 0.999376 - . ID=CGI_10023672; scaffold54 GLEAN promoter 276433 277432 0.999376 - . ID=CGI_10023672; scaffold54 TRF Tandem_Repeat 288760 288802 86 + . . scaffold54 GLEAN promoter 289751 290750 0.994905 + . ID=CGI_10023673; scaffold54 GLEAN mRNA 290751 296776 0.994905 + . ID=CGI_10023673; scaffold54 TRF Tandem_Repeat 300322 300369 96 + . . scaffold54 TRF Tandem_Repeat 301884 301918 70 + . . scaffold54 GLEAN promoter 304682 305681 0.999675 + . ID=CGI_10023674; scaffold54 GLEAN mRNA 305682 310136 0.999675 + . ID=CGI_10023674; scaffold54 TRF Tandem_Repeat 306009 306093 170 + . . scaffold54 TRF Tandem_Repeat 317163 317231 138 + . . scaffold54 TRF Tandem_Repeat 319107 319183 154 + . . scaffold54 TRF Tandem_Repeat 322453 322496 88 + . . scaffold54 GLEAN promoter 322502 323501 1 + . ID=CGI_10023675; scaffold54 GLEAN mRNA 323502 327932 1 + . ID=CGI_10023675; scaffold54 TRF Tandem_Repeat 347605 347652 96 + . . scaffold54 TRF Tandem_Repeat 363872 363935 119 + . . scaffold54 GLEAN mRNA 367276 385842 0.999414 - . ID=CGI_10023676; scaffold54 TRF Tandem_Repeat 370476 370509 50 + . . scaffold54 TRF Tandem_Repeat 371005 372145 2066 + . . scaffold54 TRF Tandem_Repeat 372154 372245 112 + . . scaffold54 TRF Tandem_Repeat 372159 372244 145 + . . scaffold54 TRF Tandem_Repeat 381434 381460 54 + . . scaffold54 GLEAN promoter 385313 386312 0.999993 + . ID=CGI_10023677; scaffold54 GLEAN promoter 385843 386842 0.999414 - . ID=CGI_10023676; scaffold54 GLEAN mRNA 386313 414759 0.999993 + . ID=CGI_10023677; scaffold54 TRF Tandem_Repeat 391294 391354 68 + . . scaffold54 TRF Tandem_Repeat 391294 391345 59 + . . scaffold54 TRF Tandem_Repeat 393669 394076 627 + . . scaffold54 TRF Tandem_Repeat 393669 394427 970 + . . scaffold54 TRF Tandem_Repeat 393669 394375 767 + . . scaffold54 TRF Tandem_Repeat 394094 394427 402 + . . scaffold54 TRF Tandem_Repeat 394094 394427 398 + . . scaffold54 TRF Tandem_Repeat 400700 400736 74 + . . scaffold54 GLEAN mRNA 416449 429362 0.998633 - . ID=CGI_10023678; scaffold54 TRF Tandem_Repeat 426659 426832 181 + . . scaffold54 GLEAN promoter 429363 430362 0.998633 - . ID=CGI_10023678; scaffold54 GLEAN mRNA 429514 434144 1 - . ID=CGI_10023679; scaffold54 GLEAN promoter 434145 435144 1 - . ID=CGI_10023679; scaffold54 GLEAN promoter 435805 436804 0.776794 + . ID=CGI_10023680; scaffold54 GLEAN promoter 436381 437380 0.718811 + . ID=CGI_10023681; scaffold54 GLEAN mRNA 436805 436978 0.776794 + . ID=CGI_10023680; scaffold54 GLEAN mRNA 437381 437815 0.718811 + . ID=CGI_10023681; scaffold54 TRF Tandem_Repeat 439389 439439 102 + . . scaffold54 GLEAN promoter 443444 444443 0.999785 + . ID=CGI_10023682; scaffold54 GLEAN mRNA 444444 451087 0.999785 + . ID=CGI_10023682; scaffold54 TRF Tandem_Repeat 446402 446435 68 + . . scaffold54 GLEAN mRNA 446803 455844 0.999676 - . ID=CGI_10023683; scaffold54 TRF Tandem_Repeat 450341 450448 94 + . . scaffold54 TRF Tandem_Repeat 450513 450853 486 + . . scaffold54 TRF Tandem_Repeat 450517 450852 505 + . . scaffold54 GLEAN promoter 455845 456844 0.999676 - . ID=CGI_10023683; scaffold54 GLEAN mRNA 458821 492283 0.373502 - . ID=CGI_10023684; scaffold54 TRF Tandem_Repeat 471084 471386 457 + . . scaffold54 TRF Tandem_Repeat 490026 490077 88 + . . scaffold54 TRF Tandem_Repeat 491725 492128 375 + . . scaffold54 GLEAN promoter 492284 493283 0.373502 - . ID=CGI_10023684; scaffold54 TRF Tandem_Repeat 495512 495551 80 + . . scaffold54 WUBlastX LINE_Penelope 504569 506479 319 - . . scaffold54 WUBlastX LINE_Penelope 504836 506371 463 - . . scaffold54 WUBlastX LINE_L1-Tx1 529592 529876 46 + . . scaffold54 TRF Tandem_Repeat 543661 543712 104 + . . scaffold54 TRF Tandem_Repeat 553730 553757 56 + . . scaffold54 WUBlastX LINE_Penelope 555428 555877 155 + . . scaffold54 WUBlastX LINE_Penelope 555530 556459 380 + . . scaffold54 WUBlastX LINE_Penelope 557469 558344 136 + . . scaffold54 WUBlastX LINE_Penelope 557508 558173 216 + . . scaffold54 TRF Tandem_Repeat 558726 558767 50 + . . scaffold54 TRF Tandem_Repeat 560248 560292 51 + . . scaffold54 TRF Tandem_Repeat 563129 563158 60 + . . scaffold54 TRF Tandem_Repeat 569216 569267 104 + . . scaffold54 TRF Tandem_Repeat 576739 577011 431 + . . scaffold54 WUBlastX LTR_Gypsy 588441 588572 23 - . . scaffold54 TRF Tandem_Repeat 604849 605025 134 + . . scaffold54 TRF Tandem_Repeat 604852 605002 143 + . . scaffold54 GLEAN promoter 609117 610116 1 + . ID=CGI_10023685; scaffold54 GLEAN mRNA 610117 618028 1 + . ID=CGI_10023685; scaffold54 TRF Tandem_Repeat 629623 629717 190 + . . scaffold54 TRF Tandem_Repeat 631335 631366 64 + . . scaffold54 TRF Tandem_Repeat 632038 632076 78 + . . scaffold54 WUBlastX LINE_RTE-BovB 633127 633429 47 - . . scaffold54 WUBlastX LINE_RTE-BovB 633193 633675 113 - . . scaffold54 WUBlastX LINE_RTE-BovB 633199 633450 123 - . . scaffold54 WUBlastX LINE_RTE-BovB 634033 634083 20 - . . scaffold54 TRF Tandem_Repeat 636416 636472 87 + . . scaffold54 WUBlastX LINE_L2 636620 636910 25 - . . scaffold54 WUBlastX LINE_CR1-L2 636737 637120 51 - . . scaffold54 WUBlastX LINE_CR1 637177 637578 92 - . . scaffold54 WUBlastX LINE_CR1 637375 637626 110 - . . scaffold54 WUBlastX LINE_CR1 637381 637578 154 - . . scaffold54 WUBlastX LINE_CR1 637381 637734 85 - . . scaffold54 WUBlastX LINE_L2 637381 637803 34 - . . scaffold54 TRF Tandem_Repeat 639124 639338 187 + . . scaffold54 GLEAN mRNA 643828 644541 0.998817 - . ID=CGI_10023686; scaffold54 GLEAN promoter 644542 645541 0.998817 - . ID=CGI_10023686; scaffold54 TRF Tandem_Repeat 647943 648016 141 + . . scaffold54 TRF Tandem_Repeat 648803 648850 96 + . . scaffold54 TRF Tandem_Repeat 649453 649488 63 + . . scaffold54 TRF Tandem_Repeat 650668 650702 70 + . . scaffold54 TRF Tandem_Repeat 650941 650985 90 + . . scaffold54 GLEAN promoter 651276 652275 0.813462 + . ID=CGI_10023687; scaffold54 GLEAN mRNA 652276 663428 0.813462 + . ID=CGI_10023687; scaffold54 TRF Tandem_Repeat 653580 653625 92 + . . scaffold54 TRF Tandem_Repeat 653643 653674 57 + . . scaffold54 TRF Tandem_Repeat 655665 655698 50 + . . scaffold54 TRF Tandem_Repeat 658653 658678 52 + . . scaffold54 TRF Tandem_Repeat 662008 662144 197 + . . scaffold54 GLEAN promoter 664380 665379 0.174144 + . ID=CGI_10023688; scaffold54 GLEAN mRNA 665380 671765 0.174144 + . ID=CGI_10023688; scaffold54 WUBlastX DNA_Crypton 666067 666513 43 + . . scaffold54 TRF Tandem_Repeat 666519 666551 66 + . . scaffold54 WUBlastX DNA_Sola 668716 668856 33 + . . scaffold54 WUBlastX DNA_Sola 669714 669866 35 + . . scaffold54 WUBlastX DNA_Sola 670780 671223 115 + . . scaffold54 TRF Tandem_Repeat 680395 681476 1462 + . . scaffold54 TRF Tandem_Repeat 682874 682915 68 + . . scaffold54 TRF Tandem_Repeat 682877 682914 51 + . . scaffold54 GLEAN mRNA 688087 689745 1 - . ID=CGI_10023689; scaffold54 GLEAN promoter 689746 690745 1 - . ID=CGI_10023689; scaffold54 GLEAN promoter 690256 691255 0.651135 + . ID=CGI_10023690; scaffold54 GLEAN mRNA 691256 701357 0.651135 + . ID=CGI_10023690; scaffold54 TRF Tandem_Repeat 699439 699487 98 + . . scaffold54 WUBlastX LINE_RTE-X 699498 699818 79 - . . scaffold54 GLEAN promoter 701441 702440 0.965492 + . ID=CGI_10023691; scaffold54 TRF Tandem_Repeat 702381 702406 52 + . . scaffold54 GLEAN mRNA 702441 721882 0.965492 + . ID=CGI_10023691; scaffold54 TRF Tandem_Repeat 704727 704770 61 + . . scaffold54 TRF Tandem_Repeat 706576 706629 55 + . . scaffold54 TRF Tandem_Repeat 706577 706618 50 + . . scaffold54 TRF Tandem_Repeat 713549 713579 62 + . . scaffold54 TRF Tandem_Repeat 714947 715018 135 + . . scaffold54 GLEAN promoter 727181 728180 0.999571 + . ID=CGI_10023692; scaffold54 GLEAN mRNA 728181 741907 0.999571 + . ID=CGI_10023692; scaffold54 TRF Tandem_Repeat 731933 731987 96 + . . scaffold54 TRF Tandem_Repeat 740383 740430 60 + . . scaffold54 TRF Tandem_Repeat 740872 740937 132 + . . scaffold54 TRF Tandem_Repeat 741203 741247 81 + . . scaffold54 GLEAN promoter 744865 745864 1 + . ID=CGI_10023693; scaffold54 GLEAN mRNA 745865 752608 1 + . ID=CGI_10023693; scaffold54 TRF Tandem_Repeat 751059 751104 56 + . . scaffold54 TRF Tandem_Repeat 751064 751177 112 + . . scaffold54 TRF Tandem_Repeat 751064 751189 108 + . . scaffold54 TRF Tandem_Repeat 751081 751189 120 + . . scaffold54 TRF Tandem_Repeat 751902 751977 143 + . . scaffold54 GLEAN promoter 752061 753060 1 + . ID=CGI_10023694; scaffold54 TRF Tandem_Repeat 752407 752449 86 + . . scaffold54 TRF Tandem_Repeat 752802 752910 159 + . . scaffold54 GLEAN mRNA 753061 757583 1 + . ID=CGI_10023694; scaffold54 GLEAN promoter 761475 762474 0.841033 + . ID=CGI_10023695; scaffold54 WUBlastX LINE_Penelope 761654 762010 40 + . . scaffold54 WUBlastX LINE_Penelope 761780 762058 68 + . . scaffold54 GLEAN mRNA 762475 777648 0.841033 + . ID=CGI_10023695; scaffold54 TRF Tandem_Repeat 763703 763741 78 + . . scaffold54 TRF Tandem_Repeat 765152 765190 78 + . . scaffold54 TRF Tandem_Repeat 765809 765855 58 + . . scaffold54 TRF Tandem_Repeat 765817 765855 55 + . . scaffold54 TRF Tandem_Repeat 770959 771008 100 + . . scaffold54 GLEAN promoter 777899 778898 0.987135 + . ID=CGI_10023696; scaffold54 GLEAN mRNA 778899 780884 0.987135 + . ID=CGI_10023696; scaffold54 WUBlastX DNA_Harbinger 778926 779090 57 + . . scaffold54 TRF Tandem_Repeat 779620 780155 910 + . . scaffold54 TRF Tandem_Repeat 780652 780690 51 + . . scaffold54 TRF Tandem_Repeat 783224 783315 107 + . . scaffold54 TRF Tandem_Repeat 783587 783641 110 + . . scaffold54 TRF Tandem_Repeat 784618 784659 84 + . . scaffold54 TRF Tandem_Repeat 784910 785031 133 + . . scaffold54 TRF Tandem_Repeat 787865 787900 72 + . . scaffold54 TRF Tandem_Repeat 796215 796253 78 + . . scaffold54 WUBlastX LTR_Gypsy 801984 802322 251 - . . scaffold54 WUBlastX LTR_Gypsy 802291 802611 330 - . . scaffold54 TRF Tandem_Repeat 817966 818056 146 + . . scaffold54 TRF Tandem_Repeat 819543 819649 133 + . . scaffold54 TRF Tandem_Repeat 855896 855937 50 + . . scaffold54 WUBlastX DNA_IS4EU 860625 860906 41 + . . scaffold540 WUBlastX DNA_hAT-hATw 4267 4791 43 + . . scaffold540 TRF Tandem_Repeat 6715 6881 53 + . . scaffold540 TRF Tandem_Repeat 12058 12103 74 + . . scaffold540 WUBlastX DNA_TcMar-Tc1 17916 18137 49 + . . scaffold540 WUBlastX DNA_TcMar-Tc1 18076 18627 89 + . . scaffold540 WUBlastX DNA_TcMar-Tc1 18163 18636 284 + . . scaffold540 TRF Tandem_Repeat 22225 22280 67 + . . scaffold540 TRF Tandem_Repeat 25714 25772 118 + . . scaffold540 TRF Tandem_Repeat 47645 47740 192 + . . scaffold540 WUBlastX LINE_Penelope 49679 49954 79 + . . scaffold540 WUBlastX LINE_Penelope 49679 49852 80 + . . scaffold540 WUBlastX LINE_Penelope 49853 50248 73 + . . scaffold540 WUBlastX LINE_Penelope 49925 50314 64 + . . scaffold540 WUBlastX LINE_Penelope 50295 50396 42 + . . scaffold540 WUBlastX DNA_Sola 61027 61158 47 + . . scaffold540 WUBlastX LTR_Gypsy 66089 66151 23 - . . scaffold540 WUBlastX LTR_Gypsy 66545 67939 869 - . . scaffold540 WUBlastX LTR_Gypsy 66785 67870 918 - . . scaffold540 WUBlastX LTR_Gypsy 67847 67987 42 - . . scaffold540 WUBlastX LTR_Gypsy 67978 69975 974 - . . scaffold540 TRF Tandem_Repeat 77607 77632 52 + . . scaffold540 WUBlastX DNA_Sola 83122 83481 67 + . . scaffold540 WUBlastX DNA_Sola 83481 84038 142 + . . scaffold540 WUBlastX DNA_Sola 84556 84636 43 + . . scaffold540 WUBlastX DNA_Sola 85289 85414 23 + . . scaffold540 WUBlastX DNA_Sola 85336 85629 37 + . . scaffold540 WUBlastX DNA_Sola 85411 85647 111 + . . scaffold540 WUBlastX DNA_Sola 86500 86643 39 + . . scaffold540 WUBlastX DNA_Sola 86705 86788 55 + . . scaffold540 WUBlastX DNA_Sola 86829 87053 34 + . . scaffold540 WUBlastX RC_Helitron 90746 92176 614 - . . scaffold540 WUBlastX RC_Helitron 92175 93434 794 - . . scaffold540 WUBlastX RC_Helitron 93411 93473 23 - . . scaffold540 WUBlastX RC_Helitron 94406 96406 1589 - . . scaffold540 WUBlastX RC_Helitron 96353 96550 107 - . . scaffold540 WUBlastX RC_Helitron 96547 98334 647 - . . scaffold540 WUBlastX RC_Helitron 98453 99085 271 - . . scaffold540 WUBlastX RC_Helitron 98543 99379 38 - . . scaffold540 WUBlastX RC_Helitron 98573 99184 72 - . . scaffold540 TRF Tandem_Repeat 108191 108223 66 + . . scaffold540 WUBlastX LTR_Gypsy-Cigr 109664 109954 31 - . . scaffold540 WUBlastX LTR_Gypsy 109763 110557 120 - . . scaffold540 WUBlastX LTR_Gypsy 110279 110557 139 - . . scaffold540 WUBlastX LTR_ERV1 110871 111074 23 - . . scaffold540 WUBlastX LTR_Gypsy 111062 111115 25 - . . scaffold540 WUBlastX LTR_Gypsy 111105 111374 48 - . . scaffold540 WUBlastX LTR_Gypsy 111177 111518 40 - . . scaffold540 WUBlastX LTR_Gypsy 111362 111445 43 - . . scaffold540 TRF Tandem_Repeat 111530 111557 56 + . . scaffold540 TRF Tandem_Repeat 119778 119802 50 + . . scaffold540 TRF Tandem_Repeat 125952 125977 52 + . . scaffold540 TRF Tandem_Repeat 160748 160780 57 + . . scaffold540 TRF Tandem_Repeat 162039 162097 118 + . . scaffold540 TRF Tandem_Repeat 164023 164059 58 + . . scaffold540 WUBlastX LINE_L2 166294 166491 36 + . . scaffold540 GLEAN mRNA 180106 188067 0.982525 - . ID=CGI_10009520; scaffold540 GLEAN promoter 188068 189067 0.982525 - . ID=CGI_10009520; scaffold540 WUBlastX RC_Helitron 197128 197340 61 + . . scaffold540 WUBlastX LINE_CR1-L2 212336 212599 47 - . . scaffold540 WUBlastX LINE_L2 212354 212491 75 - . . scaffold540 WUBlastX LINE_L2 212354 212524 59 - . . scaffold540 WUBlastX LINE_L1 212378 212740 36 - . . scaffold540 GLEAN promoter 221947 222946 0.937523 + . ID=CGI_10009521; scaffold540 GLEAN mRNA 222947 230722 0.937523 + . ID=CGI_10009521; scaffold541 TRF Tandem_Repeat 5350 6042 516 + . . scaffold541 TRF Tandem_Repeat 8430 10389 2769 + . . scaffold541 TRF Tandem_Repeat 10420 10459 53 + . . scaffold541 TRF Tandem_Repeat 15894 15955 117 + . . scaffold541 WUBlastX LTR_Gypsy 16698 17294 109 + . . scaffold541 WUBlastX LTR_Gypsy 16788 17309 308 + . . scaffold541 WUBlastX LTR_Gypsy 16806 17246 309 + . . scaffold541 WUBlastX LTR_Gypsy 16806 17141 423 + . . scaffold541 WUBlastX LTR_Gypsy 17555 20005 465 + . . scaffold541 WUBlastX LTR_Gypsy 17801 19867 1888 + . . scaffold541 WUBlastX LTR_Gypsy 19700 20065 28 + . . scaffold541 WUBlastX LTR_Pao 22714 23796 512 - . . scaffold541 WUBlastX LTR_Pao 22747 24084 396 - . . scaffold541 WUBlastX LTR_Pao 22792 23706 513 - . . scaffold541 WUBlastX LTR_Pao 24257 24427 42 - . . scaffold541 WUBlastX LTR_Pao 24575 24823 29 - . . scaffold541 WUBlastX DNA_hAT-Tip100 26204 26365 72 + . . scaffold541 WUBlastX DNA_hAT-Tip100 26547 26615 33 + . . scaffold541 WUBlastX DNA_hAT-Tip100 26632 26808 106 + . . scaffold541 WUBlastX DNA_hAT-Tip100 26638 26853 105 + . . scaffold541 WUBlastX LTR_DIRS 28745 29014 137 - . . scaffold541 TRF Tandem_Repeat 29246 29370 112 + . . scaffold541 TRF Tandem_Repeat 31333 32625 1939 + . . scaffold541 WUBlastX LTR_DIRS 32733 33218 88 - . . scaffold541 WUBlastX LTR_DIRS 33160 33375 84 - . . scaffold541 WUBlastX LTR_DIRS 33427 34536 128 - . . scaffold541 WUBlastX LTR_DIRS 34515 35096 375 - . . scaffold541 WUBlastX LTR_DIRS 35066 35629 154 - . . scaffold541 WUBlastX LTR_DIRS 35530 35709 61 - . . scaffold541 TRF Tandem_Repeat 41607 41642 72 + . . scaffold541 TRF Tandem_Repeat 41938 42008 142 + . . scaffold541 TRF Tandem_Repeat 43708 43786 158 + . . scaffold541 TRF Tandem_Repeat 45791 45840 72 + . . scaffold541 TRF Tandem_Repeat 45793 45831 55 + . . scaffold541 TRF Tandem_Repeat 47843 47882 80 + . . scaffold541 GLEAN mRNA 50245 65351 0.650911 - . ID=CGI_10022375; scaffold541 TRF Tandem_Repeat 54946 54979 68 + . . scaffold541 WUBlastX LTR_Gypsy 62079 62138 21 + . . scaffold541 WUBlastX LTR_Gypsy 62287 62532 69 + . . scaffold541 WUBlastX LTR_Gypsy 62329 62538 84 + . . scaffold541 WUBlastX LTR_Gypsy-Cigr 62362 62544 179 + . . scaffold541 WUBlastX LTR_Gypsy 62362 62619 128 + . . scaffold541 WUBlastX LTR_Gypsy 62796 62882 21 + . . scaffold541 GLEAN promoter 65352 66351 0.650911 - . ID=CGI_10022375; scaffold541 TRF Tandem_Repeat 65985 66052 52 + . . scaffold541 TRF Tandem_Repeat 66004 66059 76 + . . scaffold541 WUBlastX LINE_RTE-BovB 70007 70624 171 - . . scaffold541 WUBlastX LINE_RTE-BovB 70159 70824 139 - . . scaffold541 WUBlastX LINE_RTE-BovB 70824 71066 167 - . . scaffold541 WUBlastX LINE_RTE-BovB 71484 71867 138 - . . scaffold541 WUBlastX LINE_RTE-BovB 71810 72109 31 - . . scaffold541 WUBlastX LINE_RTE-BovB 71921 72328 172 - . . scaffold541 TRF Tandem_Repeat 73933 73980 80 + . . scaffold541 GLEAN mRNA 74207 79943 1 - . ID=CGI_10022376; scaffold541 TRF Tandem_Repeat 76667 76821 107 + . . scaffold541 TRF Tandem_Repeat 77330 77419 108 + . . scaffold541 TRF Tandem_Repeat 77904 77983 151 + . . scaffold541 GLEAN promoter 79944 80943 1 - . ID=CGI_10022376; scaffold541 TRF Tandem_Repeat 80306 80366 113 + . . scaffold541 TRF Tandem_Repeat 80366 80400 61 + . . scaffold541 GLEAN mRNA 80657 81558 0.999593 - . ID=CGI_10022377; scaffold541 GLEAN promoter 81559 82558 0.999593 - . ID=CGI_10022377; scaffold541 TRF Tandem_Repeat 81723 81790 136 + . . scaffold541 TRF Tandem_Repeat 101947 102214 101 + . . scaffold541 TRF Tandem_Repeat 102042 102249 162 + . . scaffold541 TRF Tandem_Repeat 102268 102332 55 + . . scaffold541 GLEAN promoter 105056 106055 0.777728 + . ID=CGI_10022378; scaffold541 WUBlastX LINE_L1 106011 106652 43 + . . scaffold541 GLEAN mRNA 106056 107192 0.777728 + . ID=CGI_10022378; scaffold541 WUBlastX LINE_L1 106155 106574 50 + . . scaffold541 WUBlastX LINE_L1 106191 106679 49 + . . scaffold541 WUBlastX LINE_L2 106224 106556 53 + . . scaffold541 WUBlastX RC_Helitron 106557 107243 41 + . . scaffold541 WUBlastX LINE_L1-Tx1 107658 111395 1873 + . . scaffold541 TRF Tandem_Repeat 118312 119475 1372 + . . scaffold541 GLEAN promoter 132762 133761 0.618241 + . ID=CGI_10022379; scaffold541 WUBlastX LTR_Gypsy 132833 133147 120 - . . scaffold541 GLEAN mRNA 133762 133926 0.618241 + . ID=CGI_10022379; scaffold541 WUBlastX DNA_hAT-hATw 134612 134977 66 + . . scaffold541 WUBlastX DNA_hAT-hATw 134961 135416 105 + . . scaffold541 WUBlastX LTR_Gypsy 136219 136482 99 - . . scaffold541 TRF Tandem_Repeat 174401 174458 116 + . . scaffold541 TRF Tandem_Repeat 229356 229424 84 + . . scaffold541 TRF Tandem_Repeat 229356 229415 75 + . . scaffold541 TRF Tandem_Repeat 229365 229424 75 + . . scaffold541 TRF Tandem_Repeat 230233 230266 68 + . . scaffold541 TRF Tandem_Repeat 233443 233492 82 + . . scaffold541 GLEAN mRNA 237340 255866 0.99935 - . ID=CGI_10022380; scaffold541 GLEAN promoter 242677 243676 0.609201 + . ID=CGI_10022381; scaffold541 TRF Tandem_Repeat 243428 243457 60 + . . scaffold541 GLEAN mRNA 243677 259833 0.609201 + . ID=CGI_10022381; scaffold541 TRF Tandem_Repeat 249145 249302 253 + . . scaffold541 TRF Tandem_Repeat 252734 252891 253 + . . scaffold541 GLEAN promoter 255867 256866 0.99935 - . ID=CGI_10022380; scaffold541 GLEAN mRNA 258011 261763 0.841405 - . ID=CGI_10022382; scaffold541 TRF Tandem_Repeat 259136 259832 1041 + . . scaffold541 GLEAN promoter 261764 262763 0.841405 - . ID=CGI_10022382; scaffold541 WUBlastX LINE_L2 262217 262480 31 + . . scaffold541 WUBlastX LINE_RTE-X 263531 265342 727 + . . scaffold541 GLEAN mRNA 267671 271090 1 - . ID=CGI_10022383; scaffold541 GLEAN promoter 271091 272090 1 - . ID=CGI_10022383; scaffold541 TRF Tandem_Repeat 273417 273472 55 + . . scaffold541 TRF Tandem_Repeat 275369 276023 944 + . . scaffold541 GLEAN mRNA 277149 279981 1 - . ID=CGI_10022384; scaffold541 GLEAN promoter 279982 280981 1 - . ID=CGI_10022384; scaffold541 GLEAN promoter 283449 284448 1 + . ID=CGI_10022385; scaffold541 GLEAN mRNA 284449 289835 1 + . ID=CGI_10022385; scaffold541 TRF Tandem_Repeat 285445 285511 53 + . . scaffold541 TRF Tandem_Repeat 285915 285974 120 + . . scaffold541 GLEAN promoter 289826 290825 0.733296 + . ID=CGI_10022386; scaffold541 GLEAN mRNA 290826 297279 0.733296 + . ID=CGI_10022386; scaffold541 GLEAN mRNA 301203 301839 1 - . ID=CGI_10022387; scaffold541 GLEAN promoter 301840 302839 1 - . ID=CGI_10022387; scaffold541 GLEAN mRNA 302407 306928 1 - . ID=CGI_10022388; scaffold541 GLEAN promoter 306929 307928 1 - . ID=CGI_10022388; scaffold541 GLEAN mRNA 307342 311818 0.969372 - . ID=CGI_10022389; scaffold541 TRF Tandem_Repeat 311515 311616 123 + . . scaffold541 GLEAN promoter 311819 312818 0.969372 - . ID=CGI_10022389; scaffold541 TRF Tandem_Repeat 314138 314189 104 + . . scaffold541 TRF Tandem_Repeat 314387 314481 50 + . . scaffold541 WUBlastX LINE_Penelope 315412 316995 700 + . . scaffold541 GLEAN promoter 317720 318719 0.937895 + . ID=CGI_10022390; scaffold541 GLEAN mRNA 318720 324136 0.937895 + . ID=CGI_10022390; scaffold541 TRF Tandem_Repeat 323673 324046 509 + . . scaffold541 TRF Tandem_Repeat 324771 324970 278 + . . scaffold541 TRF Tandem_Repeat 359324 359369 92 + . . scaffold541 WUBlastX LINE_RTE-X 360250 360639 77 + . . scaffold541 WUBlastX LINE_RTE-X 360352 360957 52 + . . scaffold541 WUBlastX LINE_RTE-X 360364 360846 65 + . . scaffold541 WUBlastX LINE_RTE-X 360385 360720 76 + . . scaffold541 WUBlastX LINE_RTE-X 360388 360666 104 + . . scaffold541 WUBlastX LINE_RTE-X 360466 360771 72 + . . scaffold541 WUBlastX LINE_RTE-X 361156 361332 55 + . . scaffold541 WUBlastX LINE_RTE-X 361332 361505 69 + . . scaffold541 WUBlastX LINE_RTE-X 361332 361478 105 + . . scaffold541 WUBlastX LINE_RTE-X 361508 361978 120 + . . scaffold541 WUBlastX LINE_RTE-X 361951 362331 36 + . . scaffold541 WUBlastX LINE_RTE-X 361969 362220 87 + . . scaffold541 WUBlastX LINE_RTE-X 362422 362577 31 + . . scaffold541 WUBlastX LINE_RTE-X 362428 362508 44 + . . scaffold541 WUBlastX LINE_RTE-X 362840 363031 78 + . . scaffold541 WUBlastX LINE_RTE-BovB 364564 366027 1405 + . . scaffold541 WUBlastX LINE_Penelope 369403 369783 106 + . . scaffold541 WUBlastX LINE_Penelope 369427 369987 56 + . . scaffold541 WUBlastX LINE_Penelope 369876 370007 31 + . . scaffold541 TRF Tandem_Repeat 371791 371834 88 + . . scaffold541 GLEAN mRNA 373407 387637 0.761514 - . ID=CGI_10022391; scaffold541 GLEAN promoter 375282 376281 0.618186 + . ID=CGI_10022392; scaffold541 GLEAN mRNA 376282 376449 0.618186 + . ID=CGI_10022392; scaffold541 TRF Tandem_Repeat 384707 385629 1276 + . . scaffold541 GLEAN promoter 387638 388637 0.761514 - . ID=CGI_10022391; scaffold541 GLEAN promoter 388327 389326 0.544824 + . ID=CGI_10022393; scaffold541 GLEAN mRNA 389327 398011 0.544824 + . ID=CGI_10022393; scaffold541 TRF Tandem_Repeat 396295 396367 84 + . . scaffold541 TRF Tandem_Repeat 396302 396351 54 + . . scaffold541 TRF Tandem_Repeat 406309 406336 56 + . . scaffold541 TRF Tandem_Repeat 418807 418860 99 + . . scaffold541 TRF Tandem_Repeat 449375 450056 688 + . . scaffold541 TRF Tandem_Repeat 451676 451970 237 + . . scaffold541 TRF Tandem_Repeat 451677 451839 152 + . . scaffold541 WUBlastX DNA_MuDR 456290 456544 57 - . . scaffold541 TRF Tandem_Repeat 458575 458618 52 + . . scaffold541 GLEAN promoter 465590 466589 0.782383 + . ID=CGI_10022394; scaffold541 GLEAN mRNA 466590 480582 0.782383 + . ID=CGI_10022394; scaffold541 WUBlastX LINE_CR1 468134 468199 22 + . . scaffold541 WUBlastX LINE_Proto2 468414 471029 276 + . . scaffold541 WUBlastX LINE_RTE-X 469014 471281 384 + . . scaffold541 WUBlastX LINE_RTE-X 469491 471170 409 + . . scaffold541 WUBlastX LINE_I 469602 471608 30 + . . scaffold541 TRF Tandem_Repeat 471919 471964 74 + . . scaffold541 TRF Tandem_Repeat 472750 472810 122 + . . scaffold541 TRF Tandem_Repeat 473561 473627 134 + . . scaffold541 TRF Tandem_Repeat 473963 474023 113 + . . scaffold541 TRF Tandem_Repeat 476042 476086 72 + . . scaffold541 TRF Tandem_Repeat 476257 476285 58 + . . scaffold541 TRF Tandem_Repeat 476420 476456 65 + . . scaffold541 TRF Tandem_Repeat 476565 476636 69 + . . scaffold541 TRF Tandem_Repeat 476574 476636 90 + . . scaffold541 GLEAN promoter 479601 480600 0.999995 + . ID=CGI_10022395; scaffold541 GLEAN mRNA 480601 483766 0.999995 + . ID=CGI_10022395; scaffold541 TRF Tandem_Repeat 482294 482341 89 + . . scaffold541 TRF Tandem_Repeat 491352 491546 138 + . . scaffold541 GLEAN promoter 522401 523400 0.999676 + . ID=CGI_10022396; scaffold541 GLEAN mRNA 523401 532025 0.999676 + . ID=CGI_10022396; scaffold541 TRF Tandem_Repeat 526212 526309 124 + . . scaffold541 TRF Tandem_Repeat 527189 527281 159 + . . scaffold541 TRF Tandem_Repeat 527254 527525 351 + . . scaffold541 TRF Tandem_Repeat 529046 529113 136 + . . scaffold541 TRF Tandem_Repeat 530932 531164 448 + . . scaffold541 TRF Tandem_Repeat 532314 532528 385 + . . scaffold541 GLEAN promoter 532860 533859 0.866433 + . ID=CGI_10022397; scaffold541 GLEAN mRNA 533860 534021 0.866433 + . ID=CGI_10022397; scaffold541 GLEAN mRNA 534375 545546 0.489169 - . ID=CGI_10022398; scaffold541 TRF Tandem_Repeat 534773 535031 118 + . . scaffold541 TRF Tandem_Repeat 539370 539576 207 + . . scaffold541 TRF Tandem_Repeat 539814 540129 485 + . . scaffold541 TRF Tandem_Repeat 541026 541395 573 + . . scaffold541 TRF Tandem_Repeat 542146 543786 3151 + . . scaffold541 TRF Tandem_Repeat 543939 544204 424 + . . scaffold541 GLEAN promoter 545547 546546 0.489169 - . ID=CGI_10022398; scaffold541 GLEAN promoter 548553 549552 1 + . ID=CGI_10022399; scaffold541 GLEAN mRNA 549553 554535 1 + . ID=CGI_10022399; scaffold541 TRF Tandem_Repeat 550681 551556 605 + . . scaffold541 TRF Tandem_Repeat 552036 552413 452 + . . scaffold541 TRF Tandem_Repeat 552051 552209 72 + . . scaffold541 TRF Tandem_Repeat 552100 552216 75 + . . scaffold541 TRF Tandem_Repeat 553179 554156 1084 + . . scaffold541 TRF Tandem_Repeat 553500 554257 482 + . . scaffold541 TRF Tandem_Repeat 555920 556376 580 + . . scaffold541 TRF Tandem_Repeat 556448 557765 1642 + . . scaffold541 TRF Tandem_Repeat 557808 558336 573 + . . scaffold541 TRF Tandem_Repeat 557927 558158 187 + . . scaffold541 TRF Tandem_Repeat 558118 558349 396 + . . scaffold541 GLEAN mRNA 561486 562616 0.964566 - . ID=CGI_10022400; scaffold541 GLEAN promoter 562617 563616 0.964566 - . ID=CGI_10022400; scaffold541 GLEAN mRNA 564546 595521 0.818452 - . ID=CGI_10022401; scaffold541 TRF Tandem_Repeat 567106 567221 74 + . . scaffold541 TRF Tandem_Repeat 567314 567740 396 + . . scaffold541 TRF Tandem_Repeat 567314 567740 446 + . . scaffold541 TRF Tandem_Repeat 567896 568100 224 + . . scaffold541 TRF Tandem_Repeat 567934 568022 78 + . . scaffold541 TRF Tandem_Repeat 570082 570240 272 + . . scaffold541 TRF Tandem_Repeat 571203 571743 830 + . . scaffold541 TRF Tandem_Repeat 573504 574271 1204 + . . scaffold541 TRF Tandem_Repeat 574778 575268 831 + . . scaffold541 TRF Tandem_Repeat 577731 578453 540 + . . scaffold541 TRF Tandem_Repeat 577731 578306 496 + . . scaffold541 TRF Tandem_Repeat 577738 578313 636 + . . scaffold541 TRF Tandem_Repeat 578503 579807 1731 + . . scaffold541 TRF Tandem_Repeat 580859 581019 286 + . . scaffold541 TRF Tandem_Repeat 583207 583366 234 + . . scaffold541 TRF Tandem_Repeat 584527 584660 150 + . . scaffold541 TRF Tandem_Repeat 584783 585139 522 + . . scaffold541 TRF Tandem_Repeat 584783 585139 579 + . . scaffold541 TRF Tandem_Repeat 585702 585747 56 + . . scaffold541 TRF Tandem_Repeat 585702 585731 51 + . . scaffold541 TRF Tandem_Repeat 589942 590347 428 + . . scaffold541 TRF Tandem_Repeat 590573 590748 273 + . . scaffold541 TRF Tandem_Repeat 590573 590717 197 + . . scaffold541 TRF Tandem_Repeat 590959 591613 1143 + . . scaffold541 TRF Tandem_Repeat 592729 593162 679 + . . scaffold541 GLEAN promoter 595522 596521 0.818452 - . ID=CGI_10022401; scaffold541 WUBlastX LTR_Gypsy 598747 599166 58 + . . scaffold541 WUBlastX LTR_Gypsy-Cigr 598852 599106 97 + . . scaffold541 WUBlastX LTR_Gypsy 599158 599205 25 + . . scaffold541 WUBlastX LTR_Gypsy 599339 599464 22 + . . scaffold541 WUBlastX LTR_Gypsy 599673 600248 501 + . . scaffold541 WUBlastX LTR_Gypsy 599736 600350 347 + . . scaffold541 WUBlastX LTR_Gypsy 600251 600379 100 + . . scaffold541 WUBlastX LTR_Gypsy 600251 600427 75 + . . scaffold541 WUBlastX LTR_Gypsy 600685 601701 132 + . . scaffold541 WUBlastX LTR_Gypsy 600853 601197 179 + . . scaffold541 WUBlastX LTR_Gypsy-Cigr 600907 601977 677 + . . scaffold541 WUBlastX LTR_Gypsy-Cigr 601980 602231 228 + . . scaffold541 GLEAN promoter 601981 602980 0.590147 + . ID=CGI_10022402; scaffold541 WUBlastX LTR_Gypsy 601995 602453 127 + . . scaffold541 WUBlastX LTR_Gypsy 602315 602719 129 + . . scaffold541 GLEAN mRNA 602981 603514 0.590147 + . ID=CGI_10022402; scaffold541 WUBlastX LTR_DIRS 606382 606609 121 + . . scaffold541 WUBlastX LTR_DIRS 606590 606769 21 + . . scaffold541 WUBlastX DNA_PiggyBac 611164 611556 84 + . . scaffold541 WUBlastX DNA_PiggyBac 611236 611547 174 + . . scaffold541 WUBlastX DNA_PiggyBac 611248 611604 110 + . . scaffold541 WUBlastX DNA_PiggyBac 611723 612025 168 + . . scaffold541 WUBlastX DNA_PiggyBac 611723 612091 125 + . . scaffold541 WUBlastX DNA_PiggyBac 612187 612618 212 + . . scaffold541 WUBlastX DNA_PiggyBac 612193 612729 92 + . . scaffold541 TRF Tandem_Repeat 615953 616011 100 + . . scaffold541 TRF Tandem_Repeat 616876 616918 68 + . . scaffold541 GLEAN mRNA 623249 624362 0.634588 - . ID=CGI_10022405; scaffold541 GLEAN promoter 624169 625168 0.968065 + . ID=CGI_10022406; scaffold541 GLEAN promoter 624363 625362 0.634588 - . ID=CGI_10022405; scaffold541 GLEAN mRNA 625169 631585 0.968065 + . ID=CGI_10022406; scaffold541 WUBlastX DNA_Harbinger 669892 670071 47 + . . scaffold541 WUBlastX DNA_Harbinger 670308 670439 44 + . . scaffold541 TRF Tandem_Repeat 670520 670563 88 + . . scaffold541 WUBlastX DNA_Harbinger 670658 670909 49 + . . scaffold541 WUBlastX DNA_Harbinger 670685 670888 59 + . . scaffold541 WUBlastX DNA_Harbinger 671008 671142 42 + . . scaffold541 WUBlastX DNA_Harbinger 671124 671300 158 + . . scaffold541 WUBlastX DNA_Harbinger 671404 671517 46 + . . scaffold541 TRF Tandem_Repeat 679485 679525 82 + . . scaffold541 TRF Tandem_Repeat 704843 704880 60 + . . scaffold541 GLEAN mRNA 708387 708665 0.94622 - . ID=CGI_10022407; scaffold541 GLEAN promoter 708666 709665 0.94622 - . ID=CGI_10022407; scaffold541 TRF Tandem_Repeat 709048 709088 73 + . . scaffold541 TRF Tandem_Repeat 709266 709301 72 + . . scaffold542 GLEAN mRNA 1 14908 1 + . ID=CGI_10014753; scaffold542 TRF Tandem_Repeat 4826 4972 73 + . . scaffold542 TRF Tandem_Repeat 4888 5017 93 + . . scaffold542 GLEAN mRNA 15218 18940 0.528124 - . ID=CGI_10014754; scaffold542 GLEAN promoter 18941 19940 0.528124 - . ID=CGI_10014754; scaffold542 TRF Tandem_Repeat 19122 19153 64 + . . scaffold542 TRF Tandem_Repeat 26595 26863 403 + . . scaffold542 TRF Tandem_Repeat 26596 26853 363 + . . scaffold542 TRF Tandem_Repeat 33076 33132 53 + . . scaffold542 GLEAN promoter 33582 34581 1 + . ID=CGI_10014755; scaffold542 GLEAN mRNA 34582 41498 1 + . ID=CGI_10014755; scaffold542 TRF Tandem_Repeat 36095 36119 50 + . . scaffold542 TRF Tandem_Repeat 38857 38910 108 + . . scaffold542 GLEAN mRNA 47367 58078 0.999676 - . ID=CGI_10014756; scaffold542 GLEAN promoter 55107 56106 0.937847 + . ID=CGI_10014757; scaffold542 GLEAN mRNA 56107 62005 0.937847 + . ID=CGI_10014757; scaffold542 GLEAN promoter 58079 59078 0.999676 - . ID=CGI_10014756; scaffold542 TRF Tandem_Repeat 58563 58615 106 + . . scaffold542 GLEAN promoter 61793 62792 0.996651 + . ID=CGI_10014758; scaffold542 GLEAN mRNA 62793 71880 0.996651 + . ID=CGI_10014758; scaffold542 GLEAN mRNA 79940 96731 0.999415 - . ID=CGI_10014759; scaffold542 WUBlastX LINE_RTE-X 84051 84173 26 + . . scaffold542 TRF Tandem_Repeat 85502 85548 94 + . . scaffold542 TRF Tandem_Repeat 93205 93264 120 + . . scaffold542 TRF Tandem_Repeat 95620 95668 98 + . . scaffold542 GLEAN promoter 96732 97731 0.999415 - . ID=CGI_10014759; scaffold542 TRF Tandem_Repeat 97697 97740 88 + . . scaffold542 GLEAN mRNA 97977 98803 1 - . ID=CGI_10014760; scaffold542 GLEAN promoter 98804 99803 1 - . ID=CGI_10014760; scaffold542 GLEAN mRNA 109727 126005 0.989881 - . ID=CGI_10014761; scaffold542 TRF Tandem_Repeat 114011 114056 92 + . . scaffold542 TRF Tandem_Repeat 120956 121105 147 + . . scaffold542 TRF Tandem_Repeat 121104 121252 97 + . . scaffold542 TRF Tandem_Repeat 121368 121454 113 + . . scaffold542 GLEAN promoter 126006 127005 0.989881 - . ID=CGI_10014761; scaffold542 GLEAN mRNA 126921 127223 0.618091 - . ID=CGI_10014762; scaffold542 GLEAN promoter 127224 128223 0.618091 - . ID=CGI_10014762; scaffold542 TRF Tandem_Repeat 128421 128510 135 + . . scaffold542 TRF Tandem_Repeat 141963 142014 50 + . . scaffold542 GLEAN mRNA 142279 153818 0.999185 - . ID=CGI_10014763; scaffold542 GLEAN promoter 153819 154818 0.999185 - . ID=CGI_10014763; scaffold542 TRF Tandem_Repeat 155540 155592 106 + . . scaffold542 GLEAN mRNA 155779 172057 0.583509 - . ID=CGI_10014764; scaffold542 GLEAN promoter 172058 173057 0.583509 - . ID=CGI_10014764; scaffold542 GLEAN promoter 176597 177596 1 + . ID=CGI_10014765; scaffold542 TRF Tandem_Repeat 176648 176707 120 + . . scaffold542 GLEAN mRNA 177597 179716 1 + . ID=CGI_10014765; scaffold542 TRF Tandem_Repeat 186327 186360 68 + . . scaffold542 TRF Tandem_Repeat 213505 213546 84 + . . scaffold542 WUBlastX LINE_RTE-X 217337 217591 27 - . . scaffold542 WUBlastX LINE_RTE-X 217382 217591 28 - . . scaffold542 WUBlastX LINE_RTE-X 217442 217591 40 - . . scaffold542 GLEAN mRNA 230390 250299 0.926479 - . ID=CGI_10014766; scaffold542 WUBlastX LINE_L1-Tx1 231791 232381 60 + . . scaffold542 TRF Tandem_Repeat 241831 241892 70 + . . scaffold542 GLEAN promoter 250300 251299 0.926479 - . ID=CGI_10014766; scaffold542 TRF Tandem_Repeat 258335 258376 66 + . . scaffold542 TRF Tandem_Repeat 258346 258392 62 + . . scaffold542 TRF Tandem_Repeat 259216 259313 72 + . . scaffold542 TRF Tandem_Repeat 261307 261340 50 + . . scaffold542 GLEAN mRNA 270297 274575 0.573694 - . ID=CGI_10014767; scaffold542 TRF Tandem_Repeat 271129 271310 271 + . . scaffold542 GLEAN promoter 274576 275575 0.573694 - . ID=CGI_10014767; scaffold542 TRF Tandem_Repeat 276558 276641 114 + . . scaffold542 TRF Tandem_Repeat 292845 292889 90 + . . scaffold542 TRF Tandem_Repeat 300899 300947 89 + . . scaffold542 TRF Tandem_Repeat 310547 313746 3723 + . . scaffold542 GLEAN promoter 313748 314747 0.999949 + . ID=CGI_10014768; scaffold542 GLEAN mRNA 314748 329563 0.999949 + . ID=CGI_10014768; scaffold542 TRF Tandem_Repeat 314959 314998 80 + . . scaffold542 TRF Tandem_Repeat 319199 319238 80 + . . scaffold542 TRF Tandem_Repeat 320378 320465 158 + . . scaffold542 TRF Tandem_Repeat 324440 324580 151 + . . scaffold542 TRF Tandem_Repeat 325244 325279 72 + . . scaffold542 TRF Tandem_Repeat 332756 332824 138 + . . scaffold542 TRF Tandem_Repeat 333197 333258 124 + . . scaffold542 TRF Tandem_Repeat 334209 334275 134 + . . scaffold542 GLEAN promoter 337064 338063 0.72876 + . ID=CGI_10014769; scaffold542 GLEAN mRNA 338064 343838 0.72876 + . ID=CGI_10014769; scaffold542 TRF Tandem_Repeat 339560 339604 74 + . . scaffold542 WUBlastX LTR_Gypsy 351075 351485 53 - . . scaffold542 WUBlastX LTR_Gypsy 351180 351515 62 - . . scaffold542 WUBlastX LTR_Gypsy-Cigr 351264 351485 84 - . . scaffold542 WUBlastX LTR_Gypsy 351365 351775 248 - . . scaffold542 WUBlastX LTR_Gypsy 351775 352413 502 - . . scaffold542 WUBlastX LTR_Gypsy 352532 352774 127 - . . scaffold542 WUBlastX LTR_Gypsy-Cigr 352583 352822 188 - . . scaffold542 WUBlastX LTR_Gypsy 352610 352861 110 - . . scaffold542 WUBlastX LTR_Gypsy 352783 352893 28 - . . scaffold542 TRF Tandem_Repeat 355006 355059 108 + . . scaffold542 TRF Tandem_Repeat 356152 356202 93 + . . scaffold542 TRF Tandem_Repeat 364829 364855 54 + . . scaffold542 TRF Tandem_Repeat 368907 368939 57 + . . scaffold542 GLEAN promoter 370865 371864 0.999372 + . ID=CGI_10014770; scaffold542 GLEAN mRNA 371865 372167 0.999372 + . ID=CGI_10014770; scaffold542 GLEAN promoter 375267 376266 1 + . ID=CGI_10014771; scaffold542 GLEAN mRNA 376267 381157 1 + . ID=CGI_10014771; scaffold542 TRF Tandem_Repeat 378039 378094 112 + . . scaffold542 TRF Tandem_Repeat 381195 381238 88 + . . scaffold542 WUBlastX DNA_Harbinger 381511 381654 81 - . . scaffold542 WUBlastX DNA_Harbinger 381511 381630 139 - . . scaffold542 WUBlastX DNA_Harbinger 382969 383370 147 - . . scaffold542 TRF Tandem_Repeat 387491 387567 127 + . . scaffold542 TRF Tandem_Repeat 390759 391492 374 + . . scaffold542 TRF Tandem_Repeat 390839 391264 291 + . . scaffold542 TRF Tandem_Repeat 396198 396434 215 + . . scaffold542 TRF Tandem_Repeat 396362 396584 140 + . . scaffold542 WUBlastX LINE_R2-Hero 397701 397895 52 - . . scaffold542 WUBlastX LINE_R2-Hero 397752 397895 74 - . . scaffold542 WUBlastX LINE_R2-Hero 397898 398179 20 - . . scaffold542 WUBlastX LINE_R2-Hero 397927 398046 60 - . . scaffold542 TRF Tandem_Repeat 401966 402026 115 + . . scaffold543 GLEAN promoter 61 1060 0.996819 + . ID=CGI_10000750; scaffold543 GLEAN mRNA 1061 2737 0.996819 + . ID=CGI_10000750; scaffold544 TRF Tandem_Repeat 1975 2201 199 + . . scaffold544 GLEAN promoter 5577 6576 0.999993 + . ID=CGI_10022542; scaffold544 GLEAN mRNA 6577 16519 0.999993 + . ID=CGI_10022542; scaffold544 TRF Tandem_Repeat 15534 16121 1023 + . . scaffold544 GLEAN mRNA 20827 36471 0.999238 - . ID=CGI_10022543; scaffold544 TRF Tandem_Repeat 21878 21970 131 + . . scaffold544 TRF Tandem_Repeat 21878 21970 118 + . . scaffold544 TRF Tandem_Repeat 25009 25207 218 + . . scaffold544 TRF Tandem_Repeat 25009 25201 206 + . . scaffold544 TRF Tandem_Repeat 25011 25207 214 + . . scaffold544 TRF Tandem_Repeat 26248 26696 772 + . . scaffold544 TRF Tandem_Repeat 29087 30439 1642 + . . scaffold544 TRF Tandem_Repeat 31033 31123 85 + . . scaffold544 TRF Tandem_Repeat 31113 31310 360 + . . scaffold544 TRF Tandem_Repeat 32014 32172 300 + . . scaffold544 TRF Tandem_Repeat 32429 32475 94 + . . scaffold544 GLEAN promoter 35952 36951 1 + . ID=CGI_10022544; scaffold544 GLEAN promoter 36472 37471 0.999238 - . ID=CGI_10022543; scaffold544 GLEAN mRNA 36952 44048 1 + . ID=CGI_10022544; scaffold544 WUBlastX LINE_RTE-X 38192 38419 71 - . . scaffold544 WUBlastX LINE_RTE-X 38249 38425 87 - . . scaffold544 TRF Tandem_Repeat 38438 38570 187 + . . scaffold544 TRF Tandem_Repeat 38599 38706 171 + . . scaffold544 GLEAN mRNA 43904 52870 0.999376 - . ID=CGI_10022545; scaffold544 TRF Tandem_Repeat 47914 47949 72 + . . scaffold544 TRF Tandem_Repeat 49050 49101 104 + . . scaffold544 TRF Tandem_Repeat 49636 50290 661 + . . scaffold544 TRF Tandem_Repeat 50631 50669 78 + . . scaffold544 GLEAN promoter 52871 53870 0.999376 - . ID=CGI_10022545; scaffold544 TRF Tandem_Repeat 56754 57480 1020 + . . scaffold544 GLEAN promoter 57819 58818 0.999984 + . ID=CGI_10022546; scaffold544 GLEAN mRNA 58819 59823 0.999984 + . ID=CGI_10022546; scaffold544 GLEAN mRNA 59901 61314 0.994697 - . ID=CGI_10022547; scaffold544 GLEAN promoter 61315 62314 0.994697 - . ID=CGI_10022547; scaffold544 GLEAN mRNA 63331 74623 0.889149 - . ID=CGI_10022548; scaffold544 GLEAN promoter 64830 65829 0.593391 + . ID=CGI_10022549; scaffold544 GLEAN mRNA 65830 66438 0.593391 + . ID=CGI_10022549; scaffold544 TRF Tandem_Repeat 71028 71952 1472 + . . scaffold544 GLEAN promoter 74624 75623 0.889149 - . ID=CGI_10022548; scaffold544 WUBlastX LINE_Rex-Babar 78032 78682 166 + . . scaffold544 WUBlastX LINE_CR1 78146 78691 218 + . . scaffold544 WUBlastX LINE_CR1 78228 79706 572 + . . scaffold544 WUBlastX LINE_CR1 78636 79694 913 + . . scaffold544 TRF Tandem_Repeat 84770 85068 142 + . . scaffold544 TRF Tandem_Repeat 84771 84956 126 + . . scaffold544 TRF Tandem_Repeat 84771 85104 211 + . . scaffold544 TRF Tandem_Repeat 84831 85104 223 + . . scaffold544 TRF Tandem_Repeat 86147 86280 177 + . . scaffold544 TRF Tandem_Repeat 86150 86477 163 + . . scaffold544 TRF Tandem_Repeat 86156 86519 141 + . . scaffold544 TRF Tandem_Repeat 86199 86521 174 + . . scaffold544 TRF Tandem_Repeat 86265 86464 162 + . . scaffold544 TRF Tandem_Repeat 86265 86453 140 + . . scaffold544 TRF Tandem_Repeat 87300 87478 270 + . . scaffold544 GLEAN mRNA 107696 118864 0.559073 - . ID=CGI_10022550; scaffold544 GLEAN promoter 118865 119864 0.559073 - . ID=CGI_10022550; scaffold544 TRF Tandem_Repeat 121041 121086 92 + . . scaffold544 WUBlastX LINE_RTE-BovB 129929 130291 82 - . . scaffold544 WUBlastX LINE_RTE-BovB 130067 131392 831 - . . scaffold544 WUBlastX LINE_RTE-BovB 130739 131539 72 - . . scaffold544 TRF Tandem_Repeat 133222 133305 168 + . . scaffold544 WUBlastX LINE_CR1 137047 137274 33 - . . scaffold544 WUBlastX LINE_CR1 137047 137226 35 - . . scaffold544 WUBlastX LINE_LOA 138861 138923 23 - . . scaffold544 WUBlastX LINE_CR1 139429 139518 30 - . . scaffold544 WUBlastX LINE_CR1 139456 140613 587 - . . scaffold544 WUBlastX LINE_I 139888 140742 137 - . . scaffold544 WUBlastX LINE_CR1 140582 140911 42 - . . scaffold544 WUBlastX LINE_CR1 140624 140788 105 - . . scaffold544 WUBlastX LINE_CR1 140624 140836 90 - . . scaffold544 GLEAN mRNA 151326 160758 0.999999 - . ID=CGI_10022551; scaffold544 WUBlastX LINE_L2 154794 155111 160 + . . scaffold544 TRF Tandem_Repeat 159704 159936 306 + . . scaffold544 TRF Tandem_Repeat 159704 159936 270 + . . scaffold544 GLEAN promoter 160759 161758 0.999999 - . ID=CGI_10022551; scaffold544 TRF Tandem_Repeat 179631 179682 104 + . . scaffold544 TRF Tandem_Repeat 182206 182318 104 + . . scaffold544 TRF Tandem_Repeat 186419 186505 122 + . . scaffold544 TRF Tandem_Repeat 186590 186753 184 + . . scaffold544 TRF Tandem_Repeat 186766 186957 181 + . . scaffold544 TRF Tandem_Repeat 195969 196015 85 + . . scaffold544 TRF Tandem_Repeat 196215 196271 114 + . . scaffold544 TRF Tandem_Repeat 196271 196301 62 + . . scaffold544 TRF Tandem_Repeat 197738 197806 129 + . . scaffold544 TRF Tandem_Repeat 198577 198747 105 + . . scaffold544 TRF Tandem_Repeat 198616 198706 86 + . . scaffold544 TRF Tandem_Repeat 198692 198752 50 + . . scaffold544 TRF Tandem_Repeat 200559 201236 941 + . . scaffold544 GLEAN promoter 201069 202068 0.999676 + . ID=CGI_10022552; scaffold544 GLEAN mRNA 202069 215253 0.999676 + . ID=CGI_10022552; scaffold544 WUBlastX LINE_L1-Tx1 209740 209811 22 - . . scaffold544 WUBlastX LINE_L1 209758 209829 26 - . . scaffold544 WUBlastX LINE_L1 209771 209968 46 - . . scaffold544 WUBlastX LINE_L1 209819 210052 72 - . . scaffold544 TRF Tandem_Repeat 210067 210863 1162 + . . scaffold544 WUBlastX LINE_L1 210878 211090 45 - . . scaffold544 WUBlastX LINE_L1-Tx1 210917 211087 66 - . . scaffold544 WUBlastX LINE_L1-Tx1 211036 211659 100 - . . scaffold544 WUBlastX LINE_L1-Tx1 211658 212224 273 - . . scaffold544 TRF Tandem_Repeat 218834 218887 54 + . . scaffold544 TRF Tandem_Repeat 218847 218884 58 + . . scaffold544 TRF Tandem_Repeat 219634 220776 1649 + . . scaffold544 WUBlastX LINE_RTE-X 224503 224751 67 + . . scaffold544 TRF Tandem_Repeat 237112 237177 52 + . . scaffold544 TRF Tandem_Repeat 238029 238152 81 + . . scaffold544 TRF Tandem_Repeat 238068 238214 64 + . . scaffold544 TRF Tandem_Repeat 239354 240130 1322 + . . scaffold544 GLEAN mRNA 248926 297755 0.519606 - . ID=CGI_10022553; scaffold544 WUBlastX DNA_TcMar-Tc1 251639 252619 137 - . . scaffold544 WUBlastX DNA_TcMar-Tc1 251639 252103 239 - . . scaffold544 TRF Tandem_Repeat 254100 255219 1468 + . . scaffold544 TRF Tandem_Repeat 270060 270745 880 + . . scaffold544 TRF Tandem_Repeat 270060 270746 828 + . . scaffold544 TRF Tandem_Repeat 272171 272617 499 + . . scaffold544 TRF Tandem_Repeat 287736 287803 108 + . . scaffold544 TRF Tandem_Repeat 288522 288563 84 + . . scaffold544 WUBlastX LINE_RTE-BovB 288765 288929 130 - . . scaffold544 WUBlastX LINE_RTE-BovB 288771 289052 91 - . . scaffold544 TRF Tandem_Repeat 289321 289392 99 + . . scaffold544 GLEAN promoter 297756 298755 0.519606 - . ID=CGI_10022553; scaffold544 GLEAN mRNA 305528 319882 0.997867 - . ID=CGI_10022554; scaffold544 GLEAN promoter 319883 320882 0.997867 - . ID=CGI_10022554; scaffold544 TRF Tandem_Repeat 330415 330442 56 + . . scaffold544 GLEAN promoter 334606 335605 0.593391 + . ID=CGI_10022555; scaffold544 GLEAN mRNA 335606 336685 0.593391 + . ID=CGI_10022555; scaffold544 TRF Tandem_Repeat 344274 344877 696 + . . scaffold544 TRF Tandem_Repeat 347522 347567 92 + . . scaffold544 GLEAN promoter 354682 355681 0.999991 + . ID=CGI_10022556; scaffold544 GLEAN mRNA 355682 356207 0.999991 + . ID=CGI_10022556; scaffold544 GLEAN mRNA 364180 389644 0.432142 - . ID=CGI_10022557; scaffold544 GLEAN promoter 389645 390644 0.432142 - . ID=CGI_10022557; scaffold544 GLEAN promoter 392613 393612 1 + . ID=CGI_10022558; scaffold544 GLEAN mRNA 393613 400166 1 + . ID=CGI_10022558; scaffold544 GLEAN mRNA 407870 413088 0.748096 - . ID=CGI_10022559; scaffold544 GLEAN promoter 413089 414088 0.748096 - . ID=CGI_10022559; scaffold544 TRF Tandem_Repeat 414953 415008 105 + . . scaffold544 GLEAN promoter 415534 416533 0.999875 + . ID=CGI_10022560; scaffold544 GLEAN promoter 416479 417478 0.647717 + . ID=CGI_10022561; scaffold544 GLEAN mRNA 416534 417185 0.999875 + . ID=CGI_10022560; scaffold544 GLEAN mRNA 417479 427918 0.647717 + . ID=CGI_10022561; scaffold544 TRF Tandem_Repeat 429394 429423 60 + . . scaffold544 GLEAN mRNA 435449 441299 0.999843 - . ID=CGI_10022562; scaffold544 TRF Tandem_Repeat 436873 436922 57 + . . scaffold544 GLEAN promoter 438784 439783 0.999674 + . ID=CGI_10022563; scaffold544 GLEAN mRNA 439784 461279 0.999674 + . ID=CGI_10022563; scaffold544 GLEAN promoter 441300 442299 0.999843 - . ID=CGI_10022562; scaffold544 TRF Tandem_Repeat 453843 454374 861 + . . scaffold544 TRF Tandem_Repeat 456160 456291 74 + . . scaffold544 TRF Tandem_Repeat 465154 465523 634 + . . scaffold544 TRF Tandem_Repeat 465172 465523 306 + . . scaffold544 GLEAN mRNA 468779 483075 0.999949 - . ID=CGI_10022564; scaffold544 GLEAN promoter 483076 484075 0.999949 - . ID=CGI_10022564; scaffold544 TRF Tandem_Repeat 485128 485176 91 + . . scaffold544 TRF Tandem_Repeat 486732 486788 114 + . . scaffold544 TRF Tandem_Repeat 488407 488463 114 + . . scaffold544 GLEAN mRNA 488591 488982 1 - . ID=CGI_10022565; scaffold544 GLEAN promoter 488983 489982 1 - . ID=CGI_10022565; scaffold544 GLEAN mRNA 491011 498523 1 - . ID=CGI_10022566; scaffold544 GLEAN promoter 498524 499523 1 - . ID=CGI_10022566; scaffold544 TRF Tandem_Repeat 499421 499484 128 + . . scaffold544 GLEAN mRNA 501987 507550 1 - . ID=CGI_10022567; scaffold544 GLEAN promoter 507551 508550 1 - . ID=CGI_10022567; scaffold544 GLEAN promoter 507638 508637 1 + . ID=CGI_10022568; scaffold544 GLEAN mRNA 508638 512712 1 + . ID=CGI_10022568; scaffold544 TRF Tandem_Repeat 508831 508869 69 + . . scaffold544 GLEAN promoter 515797 516796 0.371277 + . ID=CGI_10022569; scaffold544 TRF Tandem_Repeat 516063 516234 290 + . . scaffold544 GLEAN mRNA 516797 526379 0.371277 + . ID=CGI_10022569; scaffold544 TRF Tandem_Repeat 521991 522055 69 + . . scaffold544 TRF Tandem_Repeat 531780 531891 70 + . . scaffold544 TRF Tandem_Repeat 532711 532835 71 + . . scaffold544 GLEAN mRNA 532988 533191 0.733495 - . ID=CGI_10022570; scaffold544 GLEAN promoter 533192 534191 0.733495 - . ID=CGI_10022570; scaffold544 TRF Tandem_Repeat 533581 533696 62 + . . scaffold544 GLEAN promoter 537466 538465 0.743389 + . ID=CGI_10022571; scaffold544 GLEAN mRNA 538466 543827 0.743389 + . ID=CGI_10022571; scaffold544 WUBlastX LINE_RTE-X 546158 546370 53 + . . scaffold544 WUBlastX LINE_RTE-X 546167 546448 32 + . . scaffold544 WUBlastX LINE_RTE-X 546218 546358 65 + . . scaffold544 GLEAN promoter 547001 548000 0.999676 + . ID=CGI_10022572; scaffold544 GLEAN mRNA 548001 553420 0.999676 + . ID=CGI_10022572; scaffold544 GLEAN promoter 555095 556094 0.999993 + . ID=CGI_10022573; scaffold544 GLEAN mRNA 556095 559854 0.999993 + . ID=CGI_10022573; scaffold544 GLEAN mRNA 559869 574687 0.998045 - . ID=CGI_10022574; scaffold544 WUBlastX LINE_RTE-X 562425 562577 41 - . . scaffold544 WUBlastX LINE_RTE-X 562452 562577 66 - . . scaffold544 WUBlastX LTR_DIRS 563682 564251 106 + . . scaffold544 WUBlastX LTR_DIRS 563682 564386 95 + . . scaffold544 WUBlastX LTR_DIRS 563682 564062 156 + . . scaffold544 WUBlastX LTR_DIRS 564240 564437 71 + . . scaffold544 WUBlastX LTR_DIRS 564449 564691 117 + . . scaffold544 WUBlastX LTR_DIRS 565423 565758 111 + . . scaffold544 GLEAN promoter 574688 575687 0.998045 - . ID=CGI_10022574; scaffold544 TRF Tandem_Repeat 576474 576527 99 + . . scaffold544 WUBlastX LINE_Penelope 579687 580244 27 - . . scaffold544 TRF Tandem_Repeat 586934 587073 109 + . . scaffold544 TRF Tandem_Repeat 590936 591018 157 + . . scaffold544 WUBlastX LTR_Gypsy 598771 599439 531 + . . scaffold544 WUBlastX LTR_Gypsy 599397 599870 135 + . . scaffold544 WUBlastX LTR_Gypsy 599849 600565 624 + . . scaffold544 WUBlastX LTR_Gypsy 600564 601205 667 + . . scaffold544 WUBlastX LTR_Gypsy 601205 601684 371 + . . scaffold544 WUBlastX LTR_Gypsy 601681 602175 411 + . . scaffold544 WUBlastX LTR_Gypsy 601771 602250 39 + . . scaffold544 GLEAN mRNA 605077 615135 0.999563 - . ID=CGI_10022575; scaffold544 GLEAN promoter 615136 616135 0.999563 - . ID=CGI_10022575; scaffold544 GLEAN mRNA 615493 630959 0.537216 - . ID=CGI_10022576; scaffold544 WUBlastX LINE_L2 617614 618411 110 + . . scaffold544 WUBlastX LINE_CR1-L2 617626 618090 127 + . . scaffold544 GLEAN promoter 630960 631959 0.537216 - . ID=CGI_10022576; scaffold544 TRF Tandem_Repeat 633068 633254 275 + . . scaffold544 TRF Tandem_Repeat 635286 635377 166 + . . scaffold544 TRF Tandem_Repeat 637569 637607 51 + . . scaffold544 GLEAN mRNA 639153 642067 0.999542 - . ID=CGI_10022577; scaffold544 TRF Tandem_Repeat 639583 639627 90 + . . scaffold544 GLEAN promoter 642068 643067 0.999542 - . ID=CGI_10022577; scaffold544 GLEAN promoter 642961 643960 0.926863 + . ID=CGI_10022578; scaffold544 TRF Tandem_Repeat 643676 643713 76 + . . scaffold544 GLEAN mRNA 643961 652379 0.926863 + . ID=CGI_10022578; scaffold544 GLEAN mRNA 653944 660140 0.999675 - . ID=CGI_10022579; scaffold544 TRF Tandem_Repeat 657511 657556 92 + . . scaffold544 GLEAN promoter 660141 661140 0.999675 - . ID=CGI_10022579; scaffold544 TRF Tandem_Repeat 661847 661873 54 + . . scaffold544 WUBlastX LINE_RTE-X 662105 662842 222 + . . scaffold544 WUBlastX LINE_RTE-X 662924 663499 320 + . . scaffold544 WUBlastX LINE_RTE-X 663486 664172 270 + . . scaffold544 WUBlastX LINE_RTE-X 664163 664927 363 + . . scaffold544 WUBlastX LINE_CR1 664928 665530 113 + . . scaffold544 WUBlastX LINE_RTE-X 664934 665407 322 + . . scaffold544 WUBlastX LINE_RTE-X 665389 665598 91 + . . scaffold544 WUBlastX LINE_RTE-X 665392 665664 24 + . . scaffold544 WUBlastX LINE_RTE-X 666146 666634 93 + . . scaffold544 WUBlastX LINE_RTE-X 666215 666544 198 + . . scaffold544 WUBlastX LINE_RTE-X 666287 666610 168 + . . scaffold544 TRF Tandem_Repeat 691350 692746 2003 + . . scaffold544 TRF Tandem_Repeat 693491 696346 4024 + . . scaffold544 TRF Tandem_Repeat 698067 698993 949 + . . scaffold544 GLEAN promoter 709235 710234 0.999676 + . ID=CGI_10022580; scaffold544 GLEAN mRNA 710235 714554 0.999676 + . ID=CGI_10022580; scaffold544 GLEAN promoter 714555 715554 1 + . ID=CGI_10022581; scaffold544 GLEAN mRNA 715555 718510 1 + . ID=CGI_10022581; scaffold544 GLEAN mRNA 720708 721439 0.999999 - . ID=CGI_10022582; scaffold544 GLEAN promoter 721440 722439 0.999999 - . ID=CGI_10022582; scaffold544 WUBlastX LTR_Copia 721535 721714 59 - . . scaffold544 WUBlastX LTR_Gypsy 721613 721984 88 - . . scaffold544 WUBlastX LTR_Gypsy-Cigr 721682 724771 2080 - . . scaffold544 WUBlastX LTR_Gypsy 722201 725755 579 - . . scaffold544 WUBlastX LTR_Gypsy-Cigr 723074 725161 1341 - . . scaffold544 WUBlastX LTR_Gypsy-Cigr 725537 726034 186 - . . scaffold544 GLEAN mRNA 727518 748903 0.982522 - . ID=CGI_10022583; scaffold544 WUBlastX LTR_Copia 728345 728524 59 - . . scaffold544 WUBlastX LTR_Gypsy 728423 728794 88 - . . scaffold544 WUBlastX LTR_Gypsy-Cigr 728492 731581 2080 - . . scaffold544 WUBlastX LTR_Gypsy 729011 732565 579 - . . scaffold544 WUBlastX LTR_Gypsy-Cigr 729884 731971 1341 - . . scaffold544 WUBlastX LTR_Gypsy-Cigr 732347 732844 186 - . . scaffold544 WUBlastX DNA_TcMar-Tigge 738917 739033 35 + . . scaffold544 WUBlastX DNA_TcMar-Pogo 738935 739033 65 + . . scaffold544 WUBlastX DNA_TcMar-Pogo 739030 739380 105 + . . scaffold544 WUBlastX DNA_TcMar-Pogo 739066 739362 144 + . . scaffold544 WUBlastX DNA_TcMar-Pogo 739066 739296 156 + . . scaffold544 GLEAN promoter 748904 749903 0.982522 - . ID=CGI_10022583; scaffold544 TRF Tandem_Repeat 749744 749779 72 + . . scaffold544 GLEAN mRNA 751852 761217 0.870797 - . ID=CGI_10022584; scaffold544 GLEAN promoter 761218 762217 0.870797 - . ID=CGI_10022584; scaffold544 TRF Tandem_Repeat 762079 762104 52 + . . scaffold546 TRF Tandem_Repeat 10679 10791 75 + . . scaffold546 TRF Tandem_Repeat 13140 13165 52 + . . scaffold546 TRF Tandem_Repeat 13260 13306 94 + . . scaffold546 WUBlastX DNA_TcMar-Tc1 14317 15267 67 - . . scaffold546 WUBlastX DNA_TcMar-Tc1 14317 14691 165 - . . scaffold546 WUBlastX DNA_TcMar-Tc1 14703 15029 194 - . . scaffold546 WUBlastX DNA_TcMar-Marin 19969 20067 50 - . . scaffold546 WUBlastX DNA_TcMar-Tc1 19985 20446 115 - . . scaffold546 WUBlastX DNA_TcMar-Tc1 20087 20482 186 - . . scaffold546 WUBlastX DNA_TcMar-Tc1 20087 20809 101 - . . scaffold546 WUBlastX DNA_TcMar-Tc1 20497 20904 35 - . . scaffold546 WUBlastX DNA_TcMar-Tc1 21059 21166 20 - . . scaffold546 GLEAN promoter 23963 24962 0.999351 + . ID=CGI_10020990; scaffold546 GLEAN mRNA 24963 48088 0.999351 + . ID=CGI_10020990; scaffold546 TRF Tandem_Repeat 25063 25426 539 + . . scaffold546 TRF Tandem_Repeat 26207 26316 202 + . . scaffold546 TRF Tandem_Repeat 32517 32943 271 + . . scaffold546 TRF Tandem_Repeat 32517 32941 292 + . . scaffold546 TRF Tandem_Repeat 32517 32943 178 + . . scaffold546 TRF Tandem_Repeat 32800 33181 366 + . . scaffold546 WUBlastX LINE_RTE-X 36454 36750 89 - . . scaffold546 WUBlastX LINE_RTE-X 36487 36726 107 - . . scaffold546 WUBlastX LINE_RTE-X 36496 36798 27 - . . scaffold546 TRF Tandem_Repeat 37845 38040 374 + . . scaffold546 TRF Tandem_Repeat 39666 39710 90 + . . scaffold546 TRF Tandem_Repeat 44816 45160 484 + . . scaffold546 TRF Tandem_Repeat 47242 47623 534 + . . scaffold546 TRF Tandem_Repeat 53262 53308 67 + . . scaffold546 GLEAN promoter 53970 54969 0.575326 + . ID=CGI_10020991; scaffold546 GLEAN mRNA 54970 56112 0.575326 + . ID=CGI_10020991; scaffold546 GLEAN promoter 56791 57790 0.522474 + . ID=CGI_10020992; scaffold546 GLEAN mRNA 57791 65553 0.522474 + . ID=CGI_10020992; scaffold546 GLEAN mRNA 71049 119321 0.426319 - . ID=CGI_10020993; scaffold546 TRF Tandem_Repeat 78435 78462 56 + . . scaffold546 TRF Tandem_Repeat 79195 79839 1125 + . . scaffold546 TRF Tandem_Repeat 87859 87918 57 + . . scaffold546 TRF Tandem_Repeat 88104 88481 503 + . . scaffold546 TRF Tandem_Repeat 90129 91447 2137 + . . scaffold546 TRF Tandem_Repeat 90129 91447 2124 + . . scaffold546 TRF Tandem_Repeat 90129 91447 2154 + . . scaffold546 TRF Tandem_Repeat 96003 96310 221 + . . scaffold546 TRF Tandem_Repeat 96003 97082 266 + . . scaffold546 TRF Tandem_Repeat 96008 96653 421 + . . scaffold546 TRF Tandem_Repeat 96064 97149 888 + . . scaffold546 TRF Tandem_Repeat 97898 98861 1554 + . . scaffold546 TRF Tandem_Repeat 101995 102330 584 + . . scaffold546 TRF Tandem_Repeat 103460 103798 669 + . . scaffold546 TRF Tandem_Repeat 113193 113270 52 + . . scaffold546 TRF Tandem_Repeat 114137 114898 1013 + . . scaffold546 TRF Tandem_Repeat 115015 115040 52 + . . scaffold546 GLEAN promoter 118604 119603 1 + . ID=CGI_10020994; scaffold546 GLEAN promoter 119322 120321 0.426319 - . ID=CGI_10020993; scaffold546 GLEAN mRNA 119604 132473 1 + . ID=CGI_10020994; scaffold546 TRF Tandem_Repeat 129607 129658 104 + . . scaffold546 TRF Tandem_Repeat 130550 131162 1156 + . . scaffold546 GLEAN mRNA 136572 153074 0.999871 - . ID=CGI_10020995; scaffold546 TRF Tandem_Repeat 141672 142264 872 + . . scaffold546 TRF Tandem_Repeat 142364 142736 586 + . . scaffold546 WUBlastX LINE_L2 144432 145430 29 + . . scaffold546 WUBlastX LINE_L1-Tx1 144591 145736 812 + . . scaffold546 WUBlastX LINE_L1-Tx1 145730 146524 102 + . . scaffold546 WUBlastX LINE_L1-Tx1 146713 147087 156 + . . scaffold546 WUBlastX LINE_L1 147078 148313 186 + . . scaffold546 GLEAN promoter 153075 154074 0.999871 - . ID=CGI_10020995; scaffold546 WUBlastX DNA_IS4EU 154787 154933 40 + . . scaffold546 WUBlastX DNA_NOF? 155121 155381 43 + . . scaffold546 WUBlastX DNA_NOF 155175 155375 51 + . . scaffold546 TRF Tandem_Repeat 159325 159444 125 + . . scaffold546 TRF Tandem_Repeat 159571 159660 90 + . . scaffold546 GLEAN mRNA 162879 170158 1 - . ID=CGI_10020996; scaffold546 GLEAN promoter 170159 171158 1 - . ID=CGI_10020996; scaffold546 TRF Tandem_Repeat 172706 172895 344 + . . scaffold546 GLEAN promoter 194816 195815 0.84036 + . ID=CGI_10020997; scaffold546 GLEAN mRNA 195816 206444 0.84036 + . ID=CGI_10020997; scaffold546 TRF Tandem_Repeat 201187 201406 296 + . . scaffold546 TRF Tandem_Repeat 201187 201406 224 + . . scaffold546 TRF Tandem_Repeat 204159 204682 724 + . . scaffold546 GLEAN mRNA 210495 221113 0.467145 - . ID=CGI_10020998; scaffold546 GLEAN promoter 221114 222113 0.467145 - . ID=CGI_10020998; scaffold546 TRF Tandem_Repeat 232215 232905 179 + . . scaffold546 TRF Tandem_Repeat 241111 241292 71 + . . scaffold546 TRF Tandem_Repeat 241399 241457 73 + . . scaffold546 TRF Tandem_Repeat 243204 243499 427 + . . scaffold546 TRF Tandem_Repeat 243204 244989 1778 + . . scaffold546 TRF Tandem_Repeat 243204 245048 1927 + . . scaffold546 TRF Tandem_Repeat 243497 245070 1540 + . . scaffold546 GLEAN mRNA 249088 251722 0.586602 - . ID=CGI_10020999; scaffold546 WUBlastX LTR_Gypsy 249274 251256 584 - . . scaffold546 GLEAN promoter 251723 252722 0.586602 - . ID=CGI_10020999; scaffold546 WUBlastX LTR_Gypsy 251741 252571 57 - . . scaffold546 WUBlastX LTR_Gypsy 252086 252583 452 - . . scaffold546 TRF Tandem_Repeat 254163 254373 189 + . . scaffold546 TRF Tandem_Repeat 257261 257454 388 + . . scaffold546 TRF Tandem_Repeat 263375 263410 63 + . . scaffold546 TRF Tandem_Repeat 263437 264559 1605 + . . scaffold546 GLEAN promoter 284596 285595 0.999676 + . ID=CGI_10021000; scaffold546 GLEAN mRNA 285596 294682 0.999676 + . ID=CGI_10021000; scaffold546 GLEAN mRNA 296196 301157 0.997818 - . ID=CGI_10021001; scaffold546 GLEAN promoter 301158 302157 0.997818 - . ID=CGI_10021001; scaffold546 TRF Tandem_Repeat 304273 305997 2065 + . . scaffold546 WUBlastX LINE_CR1 310727 311419 21 + . . scaffold546 WUBlastX LINE_CR1-L2 310940 311233 75 + . . scaffold546 WUBlastX LINE_RTE-X 310985 311419 234 + . . scaffold546 WUBlastX LINE_RTE-X 311407 312300 207 + . . scaffold546 TRF Tandem_Repeat 318535 318633 108 + . . scaffold546 WUBlastX LINE_CR1-L2 324492 326024 495 - . . scaffold546 WUBlastX LINE_CR1-L2 324870 326024 510 - . . scaffold546 TRF Tandem_Repeat 328664 328721 116 + . . scaffold546 TRF Tandem_Repeat 330174 330212 51 + . . scaffold546 TRF Tandem_Repeat 331169 331220 95 + . . scaffold546 TRF Tandem_Repeat 334607 334761 215 + . . scaffold546 GLEAN promoter 339806 340805 0.998653 + . ID=CGI_10021002; scaffold546 GLEAN mRNA 340806 349510 0.998653 + . ID=CGI_10021002; scaffold546 WUBlastX LINE_RTE-X 352047 354008 436 - . . scaffold546 WUBlastX LINE_RTE-X 352590 353972 558 - . . scaffold546 WUBlastX LINE_RTE-X 353999 354637 28 - . . scaffold546 WUBlastX LINE_RTE-X 354107 354574 68 - . . scaffold546 WUBlastX LINE_RTE-X 354555 355328 184 - . . scaffold546 TRF Tandem_Repeat 359309 359399 182 + . . scaffold546 WUBlastX LINE_RTE-BovB 368578 369273 457 + . . scaffold546 WUBlastX LINE_RTE-BovB 368578 369453 245 + . . scaffold546 WUBlastX LINE_RTE-BovB 369286 369621 191 + . . scaffold546 WUBlastX LINE_RTE-BovB 369286 369567 191 + . . scaffold546 WUBlastX LINE_RTE-BovB 369573 369776 148 + . . scaffold546 WUBlastX LINE_RTE-BovB 369573 369845 116 + . . scaffold546 WUBlastX LINE_RTE-BovB 369788 369874 22 + . . scaffold546 TRF Tandem_Repeat 377819 377950 97 + . . scaffold546 TRF Tandem_Repeat 377830 377924 118 + . . scaffold546 GLEAN mRNA 387340 395941 0.945058 - . ID=CGI_10021003; scaffold546 WUBlastX DNA_hAT-Tip100 394012 394245 116 - . . scaffold546 WUBlastX DNA_hAT-Tip100 394018 394299 41 - . . scaffold546 GLEAN promoter 395942 396941 0.945058 - . ID=CGI_10021003; scaffold546 TRF Tandem_Repeat 398410 398481 85 + . . scaffold546 TRF Tandem_Repeat 398577 398609 66 + . . scaffold546 TRF Tandem_Repeat 398610 398637 56 + . . scaffold546 TRF Tandem_Repeat 406215 406330 62 + . . scaffold546 TRF Tandem_Repeat 406345 406393 50 + . . scaffold546 TRF Tandem_Repeat 409030 409079 100 + . . scaffold546 TRF Tandem_Repeat 409079 409104 52 + . . scaffold546 WUBlastX LINE_L1-Tx1 414287 414547 48 + . . scaffold546 GLEAN promoter 421884 422883 0.993315 + . ID=CGI_10021004; scaffold546 GLEAN mRNA 422884 427193 0.993315 + . ID=CGI_10021004; scaffold546 GLEAN mRNA 427232 432728 1 - . ID=CGI_10021005; scaffold546 TRF Tandem_Repeat 431557 431611 74 + . . scaffold546 GLEAN promoter 432060 433059 0.990768 + . ID=CGI_10021006; scaffold546 GLEAN promoter 432729 433728 1 - . ID=CGI_10021005; scaffold546 GLEAN mRNA 433060 444716 0.990768 + . ID=CGI_10021006; scaffold546 TRF Tandem_Repeat 453804 453858 110 + . . scaffold546 TRF Tandem_Repeat 455618 455651 68 + . . scaffold546 TRF Tandem_Repeat 457666 457706 82 + . . scaffold546 TRF Tandem_Repeat 461780 461830 93 + . . scaffold546 TRF Tandem_Repeat 482080 482614 697 + . . scaffold546 TRF Tandem_Repeat 482119 482607 682 + . . scaffold546 TRF Tandem_Repeat 482119 482763 512 + . . scaffold546 TRF Tandem_Repeat 482223 482569 158 + . . scaffold546 TRF Tandem_Repeat 503795 503831 56 + . . scaffold546 TRF Tandem_Repeat 508907 508948 84 + . . scaffold546 TRF Tandem_Repeat 510822 510855 68 + . . scaffold546 TRF Tandem_Repeat 517142 517167 52 + . . scaffold546 GLEAN promoter 527808 528807 0.875586 + . ID=CGI_10021007; scaffold546 GLEAN mRNA 528808 530185 0.875586 + . ID=CGI_10021007; scaffold546 GLEAN promoter 529765 530764 0.372451 + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 530386 530425 53 + . . scaffold546 TRF Tandem_Repeat 530394 530425 55 + . . scaffold546 GLEAN mRNA 530765 548083 0.372451 + . ID=CGI_10021008; scaffold546 TRF Tandem_Repeat 532626 532793 282 + . . scaffold546 TRF Tandem_Repeat 541934 542118 316 + . . scaffold546 TRF Tandem_Repeat 542108 542517 437 + . . scaffold546 TRF Tandem_Repeat 542353 542491 59 + . . scaffold546 TRF Tandem_Repeat 542365 542479 82 + . . scaffold546 TRF Tandem_Repeat 542486 542648 254 + . . scaffold546 GLEAN promoter 552184 553183 1 + . ID=CGI_10021009; scaffold546 GLEAN mRNA 553184 556111 1 + . ID=CGI_10021009; scaffold546 GLEAN promoter 556785 557784 0.999984 + . ID=CGI_10021010; scaffold546 GLEAN mRNA 557785 558447 0.999984 + . ID=CGI_10021010; scaffold546 GLEAN mRNA 559470 566534 0.669366 - . ID=CGI_10021011; scaffold546 GLEAN promoter 566137 567136 1 + . ID=CGI_10021012; scaffold546 GLEAN promoter 566535 567534 0.669366 - . ID=CGI_10021011; scaffold546 GLEAN mRNA 567137 568968 1 + . ID=CGI_10021012; scaffold546 GLEAN promoter 569497 570496 0.999026 + . ID=CGI_10021013; scaffold546 GLEAN mRNA 570497 587543 0.999026 + . ID=CGI_10021013; scaffold546 GLEAN mRNA 572227 582080 0.831479 - . ID=CGI_10021014; scaffold546 TRF Tandem_Repeat 579304 579379 152 + . . scaffold546 GLEAN promoter 582081 583080 0.831479 - . ID=CGI_10021014; scaffold546 TRF Tandem_Repeat 586446 586503 116 + . . scaffold546 GLEAN mRNA 592455 623617 0.990448 - . ID=CGI_10021015; scaffold546 TRF Tandem_Repeat 594833 594858 52 + . . scaffold546 TRF Tandem_Repeat 608254 608297 88 + . . scaffold546 TRF Tandem_Repeat 613344 614027 918 + . . scaffold546 GLEAN promoter 623618 624617 0.990448 - . ID=CGI_10021015; scaffold546 GLEAN mRNA 624580 625582 1 - . ID=CGI_10021016; scaffold546 GLEAN promoter 625583 626582 1 - . ID=CGI_10021016; scaffold546 GLEAN mRNA 629638 632783 0.999393 - . ID=CGI_10021017; scaffold546 GLEAN promoter 630967 631966 0.56407 + . ID=CGI_10021018; scaffold546 GLEAN mRNA 631967 644016 0.56407 + . ID=CGI_10021018; scaffold546 GLEAN promoter 632784 633783 0.999393 - . ID=CGI_10021017; scaffold546 TRF Tandem_Repeat 641526 641587 124 + . . scaffold546 GLEAN promoter 644146 645145 1 + . ID=CGI_10021019; scaffold546 TRF Tandem_Repeat 644819 644886 136 + . . scaffold546 GLEAN mRNA 645146 650884 1 + . ID=CGI_10021019; scaffold546 WUBlastX LINE_L1 647635 648216 25 + . . scaffold546 TRF Tandem_Repeat 658333 658379 51 + . . scaffold546 GLEAN mRNA 662439 670249 0.999395 - . ID=CGI_10021020; scaffold546 TRF Tandem_Repeat 662918 662946 58 + . . scaffold546 GLEAN promoter 670250 671192 0.999395 - . ID=CGI_10021020; scaffold547 TRF Tandem_Repeat 4133 4169 74 + . . scaffold547 TRF Tandem_Repeat 5544 5621 93 + . . scaffold547 TRF Tandem_Repeat 40921 40994 130 + . . scaffold547 TRF Tandem_Repeat 41006 41054 98 + . . scaffold547 TRF Tandem_Repeat 47229 47524 538 + . . scaffold547 TRF Tandem_Repeat 47707 48085 494 + . . scaffold547 GLEAN mRNA 51711 70960 0.734331 - . ID=CGI_10018841; scaffold547 GLEAN promoter 70961 71960 0.734331 - . ID=CGI_10018841; scaffold547 GLEAN promoter 79145 80144 0.730761 + . ID=CGI_10018842; scaffold547 GLEAN mRNA 80145 147153 0.730761 + . ID=CGI_10018842; scaffold547 TRF Tandem_Repeat 87792 88269 510 + . . scaffold547 TRF Tandem_Repeat 87792 88269 498 + . . scaffold547 TRF Tandem_Repeat 116221 116270 57 + . . scaffold547 TRF Tandem_Repeat 129244 129285 84 + . . scaffold547 TRF Tandem_Repeat 135667 135818 107 + . . scaffold547 TRF Tandem_Repeat 137230 137271 50 + . . scaffold547 GLEAN mRNA 155714 157888 0.999826 - . ID=CGI_10018843; scaffold547 GLEAN promoter 157889 158888 0.999826 - . ID=CGI_10018843; scaffold547 TRF Tandem_Repeat 162444 162548 201 + . . scaffold547 TRF Tandem_Repeat 162474 162541 50 + . . scaffold547 GLEAN promoter 162601 163600 0.988959 + . ID=CGI_10018844; scaffold547 GLEAN mRNA 163601 165468 0.988959 + . ID=CGI_10018844; scaffold547 GLEAN mRNA 171342 173940 1 - . ID=CGI_10018845; scaffold547 GLEAN promoter 173941 174940 1 - . ID=CGI_10018845; scaffold547 GLEAN promoter 176069 177068 1 + . ID=CGI_10018846; scaffold547 TRF Tandem_Repeat 176620 176654 70 + . . scaffold547 GLEAN mRNA 177069 177997 1 + . ID=CGI_10018846; scaffold547 TRF Tandem_Repeat 187862 187895 68 + . . scaffold547 TRF Tandem_Repeat 190815 191724 1338 + . . scaffold547 TRF Tandem_Repeat 202315 202384 56 + . . scaffold547 TRF Tandem_Repeat 202323 202406 86 + . . scaffold547 GLEAN promoter 205215 206214 0.996504 + . ID=CGI_10018847; scaffold547 TRF Tandem_Repeat 205542 205569 56 + . . scaffold547 GLEAN mRNA 206215 217037 0.996504 + . ID=CGI_10018847; scaffold547 WUBlastX DNA_TcMar-Tigge 206733 207044 64 - . . scaffold547 WUBlastX DNA_TcMar-Pogo 206823 207068 136 - . . scaffold547 TRF Tandem_Repeat 217953 218030 62 + . . scaffold547 TRF Tandem_Repeat 217965 218030 80 + . . scaffold547 GLEAN promoter 222816 223815 0.999675 + . ID=CGI_10018848; scaffold547 GLEAN mRNA 223816 230106 0.999675 + . ID=CGI_10018848; scaffold547 TRF Tandem_Repeat 233866 233944 131 + . . scaffold547 GLEAN promoter 235274 236273 0.993907 + . ID=CGI_10018849; scaffold547 GLEAN mRNA 236274 248621 0.993907 + . ID=CGI_10018849; scaffold547 TRF Tandem_Repeat 249802 249853 104 + . . scaffold547 TRF Tandem_Repeat 250971 251649 922 + . . scaffold547 GLEAN mRNA 253913 256445 0.733889 - . ID=CGI_10018850; scaffold547 GLEAN promoter 256446 257445 0.733889 - . ID=CGI_10018850; scaffold547 TRF Tandem_Repeat 269179 269233 94 + . . scaffold547 GLEAN mRNA 269439 272596 0.997873 - . ID=CGI_10018851; scaffold547 GLEAN promoter 272597 273596 0.997873 - . ID=CGI_10018851; scaffold547 TRF Tandem_Repeat 276431 276455 50 + . . scaffold547 GLEAN mRNA 280495 286190 1 - . ID=CGI_10018852; scaffold547 GLEAN promoter 286191 287190 1 - . ID=CGI_10018852; scaffold547 GLEAN promoter 287887 288886 0.999676 + . ID=CGI_10018853; scaffold547 GLEAN mRNA 288887 310939 0.999676 + . ID=CGI_10018853; scaffold547 TRF Tandem_Repeat 327819 327852 68 + . . scaffold547 GLEAN promoter 328115 329114 0.934645 + . ID=CGI_10018854; scaffold547 GLEAN mRNA 329115 351958 0.934645 + . ID=CGI_10018854; scaffold547 TRF Tandem_Repeat 330551 330610 93 + . . scaffold547 TRF Tandem_Repeat 339092 339126 61 + . . scaffold547 GLEAN mRNA 358967 378174 1 - . ID=CGI_10018855; scaffold547 GLEAN promoter 378175 379174 1 - . ID=CGI_10018855; scaffold547 GLEAN mRNA 378941 387494 0.998696 - . ID=CGI_10018856; scaffold547 GLEAN promoter 387495 388494 0.998696 - . ID=CGI_10018856; scaffold547 TRF Tandem_Repeat 415098 415177 56 + . . scaffold547 GLEAN mRNA 419498 445830 0.497938 - . ID=CGI_10018857; scaffold547 WUBlastX LTR_Ngaro 429502 429603 24 + . . scaffold547 WUBlastX LTR_Ngaro 429517 429600 28 + . . scaffold547 WUBlastX LTR_Ngaro 429623 429841 26 + . . scaffold547 WUBlastX LTR_Ngaro 429638 429799 52 + . . scaffold547 WUBlastX LTR_Ngaro 430314 430430 36 + . . scaffold547 WUBlastX DNA_Kolobok-IS4 431956 432198 20 - . . scaffold547 WUBlastX DNA_Kolobok-IS4 432225 432524 41 - . . scaffold547 GLEAN promoter 445831 446830 0.497938 - . ID=CGI_10018857; scaffold547 GLEAN promoter 452649 453648 0.872777 + . ID=CGI_10018858; scaffold547 GLEAN mRNA 453649 455262 0.872777 + . ID=CGI_10018858; scaffold547 WUBlastX LTR_Gypsy-Cigr 454080 454526 149 + . . scaffold547 WUBlastX LTR_Gypsy 454083 454664 114 + . . scaffold547 WUBlastX DNA_TcMar-Tc1 456837 456941 25 - . . scaffold547 WUBlastX DNA_TcMar-Tc1 457475 457627 31 - . . scaffold547 WUBlastX DNA_TcMar-Tc1 457527 457907 71 - . . scaffold547 WUBlastX DNA_TcMar-Tc1 457596 457922 73 - . . scaffold547 WUBlastX DNA_TcMar-Tc1 457650 458480 145 - . . scaffold547 TRF Tandem_Repeat 467471 468176 969 + . . scaffold547 GLEAN mRNA 486833 491970 1 - . ID=CGI_10018859; scaffold547 GLEAN promoter 491971 492970 1 - . ID=CGI_10018859; scaffold547 GLEAN promoter 494103 495102 0.989151 + . ID=CGI_10018860; scaffold547 GLEAN mRNA 495103 501112 0.989151 + . ID=CGI_10018860; scaffold547 TRF Tandem_Repeat 518684 518726 79 + . . scaffold547 TRF Tandem_Repeat 520114 520158 90 + . . scaffold547 TRF Tandem_Repeat 521426 521468 86 + . . scaffold547 TRF Tandem_Repeat 533100 533144 81 + . . scaffold547 WUBlastX LINE_RTE-X 538894 539034 54 + . . scaffold547 WUBlastX LINE_RTE-X 538915 539280 40 + . . scaffold547 WUBlastX LINE_RTE-X 540050 540271 33 + . . scaffold547 WUBlastX LINE_RTE-X 541034 541357 111 - . . scaffold547 WUBlastX LINE_RTE-X 541495 541698 27 - . . scaffold547 WUBlastX LINE_RTE-X 541513 541680 63 - . . scaffold547 GLEAN mRNA 549285 551401 0.999661 - . ID=CGI_10018861; scaffold547 GLEAN promoter 550964 551963 0.999981 + . ID=CGI_10018862; scaffold547 GLEAN promoter 551402 552401 0.999661 - . ID=CGI_10018861; scaffold547 GLEAN mRNA 551964 556790 0.999981 + . ID=CGI_10018862; scaffold547 GLEAN mRNA 557019 562029 1 - . ID=CGI_10018863; scaffold547 GLEAN promoter 562030 563029 1 - . ID=CGI_10018863; scaffold547 GLEAN mRNA 562431 569899 0.997945 - . ID=CGI_10018864; scaffold547 GLEAN promoter 569900 570899 0.997945 - . ID=CGI_10018864; scaffold548 GLEAN promoter 1133 2132 0.999996 + . ID=CGI_10000247; scaffold548 GLEAN mRNA 2133 3257 0.999996 + . ID=CGI_10000247; scaffold549 GLEAN promoter 1 462 0.999993 + . ID=CGI_10004100; scaffold549 GLEAN mRNA 463 9456 0.999993 + . ID=CGI_10004100; scaffold549 WUBlastX LINE_RTE-X 8122 8202 36 - . . scaffold549 WUBlastX LINE_RTE-X 8416 8481 39 - . . scaffold549 WUBlastX LINE_RTE-X 8416 8565 26 - . . scaffold549 GLEAN promoter 8469 9468 0.999068 + . ID=CGI_10004101; scaffold549 WUBlastX LINE_RTE-X 8536 8565 29 - . . scaffold549 GLEAN mRNA 9469 9885 0.999068 + . ID=CGI_10004101; scaffold549 GLEAN mRNA 13471 23475 0.920096 - . ID=CGI_10004102; scaffold549 TRF Tandem_Repeat 20229 20366 267 + . . scaffold549 TRF Tandem_Repeat 20393 20542 124 + . . scaffold549 TRF Tandem_Repeat 21017 21246 379 + . . scaffold549 TRF Tandem_Repeat 21601 22072 450 + . . scaffold549 GLEAN promoter 23476 24475 0.920096 - . ID=CGI_10004102; scaffold549 TRF Tandem_Repeat 23693 23746 108 + . . scaffold549 GLEAN promoter 30331 31330 0.976872 + . ID=CGI_10004103; scaffold549 GLEAN mRNA 31331 63327 0.976872 + . ID=CGI_10004103; scaffold549 TRF Tandem_Repeat 32703 32739 65 + . . scaffold549 TRF Tandem_Repeat 35357 36737 1971 + . . scaffold549 TRF Tandem_Repeat 37445 37743 293 + . . scaffold549 GLEAN mRNA 50843 62768 0.999759 - . ID=CGI_10004104; scaffold549 TRF Tandem_Repeat 53551 53584 61 + . . scaffold549 WUBlastX LINE_RTE-BovB 59078 59395 369 + . . scaffold549 WUBlastX LINE_RTE-BovB 59385 59585 153 + . . scaffold549 WUBlastX LINE_RTE-BovB 59563 59670 55 + . . scaffold549 WUBlastX LINE_RTE-BovB 59660 59884 131 + . . scaffold549 TRF Tandem_Repeat 60496 60547 68 + . . scaffold549 GLEAN promoter 62769 63768 0.999759 - . ID=CGI_10004104; scaffold549 GLEAN mRNA 72231 74839 1 - . ID=CGI_10004105; scaffold549 GLEAN promoter 74840 75839 1 - . ID=CGI_10004105; scaffold549 TRF Tandem_Repeat 78177 78321 146 + . . scaffold549 TRF Tandem_Repeat 78348 78488 149 + . . scaffold549 TRF Tandem_Repeat 79957 80481 620 + . . scaffold549 TRF Tandem_Repeat 79960 80441 695 + . . scaffold549 WUBlastX LINE_CR1 85551 85910 34 - . . scaffold550 TRF Tandem_Repeat 4304 4349 85 + . . scaffold550 TRF Tandem_Repeat 5138 5187 55 + . . scaffold550 GLEAN mRNA 12882 17863 0.999995 - . ID=CGI_10012480; scaffold550 GLEAN promoter 17864 18863 0.999995 - . ID=CGI_10012480; scaffold550 GLEAN mRNA 17952 19968 1 - . ID=CGI_10012481; scaffold550 GLEAN promoter 19969 20968 1 - . ID=CGI_10012481; scaffold550 TRF Tandem_Repeat 20177 20299 97 + . . scaffold550 GLEAN promoter 20382 21381 0.819652 + . ID=CGI_10012482; scaffold550 GLEAN mRNA 21382 38019 0.819652 + . ID=CGI_10012482; scaffold550 TRF Tandem_Repeat 30322 30350 58 + . . scaffold550 TRF Tandem_Repeat 30350 30406 114 + . . scaffold550 TRF Tandem_Repeat 35193 35234 68 + . . scaffold550 GLEAN promoter 41295 42294 0.723644 + . ID=CGI_10012483; scaffold550 GLEAN mRNA 42295 70110 0.723644 + . ID=CGI_10012483; scaffold550 WUBlastX DNA_Harbinger 45983 46156 41 + . . scaffold550 WUBlastX DNA_Harbinger 54909 55277 248 - . . scaffold550 TRF Tandem_Repeat 55836 55882 94 + . . scaffold550 WUBlastX DNA_Harbinger 56129 56221 35 - . . scaffold550 WUBlastX DNA_Harbinger 56147 56266 66 - . . scaffold550 TRF Tandem_Repeat 56303 56342 80 + . . scaffold550 WUBlastX DNA_Harbinger 56456 56617 98 - . . scaffold550 WUBlastX DNA_Harbinger 56495 56614 133 - . . scaffold550 WUBlastX DNA_Harbinger 57209 57670 70 - . . scaffold550 WUBlastX DNA_Harbinger 57209 57577 119 - . . scaffold550 WUBlastX LINE_L1-Tx1 59567 61198 225 - . . scaffold550 WUBlastX LINE_L1 61197 61367 44 - . . scaffold550 WUBlastX LINE_L1-Tx1 61206 61277 63 - . . scaffold550 WUBlastX LINE_L1 61206 61319 46 - . . scaffold550 WUBlastX LINE_L1-Tx1 61209 61301 55 - . . scaffold550 WUBlastX LINE_L1-Tx1 61940 62035 20 - . . scaffold550 GLEAN promoter 70696 71695 1 + . ID=CGI_10012484; scaffold550 GLEAN mRNA 71696 76018 1 + . ID=CGI_10012484; scaffold550 GLEAN promoter 77107 78106 0.999669 + . ID=CGI_10012485; scaffold550 GLEAN mRNA 78107 95572 0.999669 + . ID=CGI_10012485; scaffold550 TRF Tandem_Repeat 86569 86611 86 + . . scaffold550 TRF Tandem_Repeat 98009 98038 60 + . . scaffold550 GLEAN promoter 98385 99384 0.829395 + . ID=CGI_10012486; scaffold550 GLEAN mRNA 99385 115908 0.829395 + . ID=CGI_10012486; scaffold550 TRF Tandem_Repeat 101574 101616 86 + . . scaffold550 GLEAN mRNA 109040 110551 1 - . ID=CGI_10012487; scaffold550 GLEAN promoter 110552 111551 1 - . ID=CGI_10012487; scaffold550 TRF Tandem_Repeat 113158 113423 345 + . . scaffold550 GLEAN mRNA 113868 122090 1 - . ID=CGI_10012488; scaffold550 TRF Tandem_Repeat 118680 120271 1965 + . . scaffold550 TRF Tandem_Repeat 120440 120494 78 + . . scaffold550 TRF Tandem_Repeat 121027 121059 66 + . . scaffold550 GLEAN promoter 121577 122576 0.820999 + . ID=CGI_10012489; scaffold550 GLEAN promoter 122091 123090 1 - . ID=CGI_10012488; scaffold550 GLEAN mRNA 122577 136674 0.820999 + . ID=CGI_10012489; scaffold550 TRF Tandem_Repeat 128919 128964 92 + . . scaffold550 GLEAN mRNA 134556 152020 0.969581 - . ID=CGI_10012490; scaffold550 WUBlastX RC_Helitron 149373 149684 41 - . . scaffold550 WUBlastX DNA_Helitron 149470 150264 128 - . . scaffold550 WUBlastX DNA_Helitron 150305 151396 175 - . . scaffold550 WUBlastX RC_Helitron 150734 151387 251 - . . scaffold550 TRF Tandem_Repeat 151397 151463 98 + . . scaffold550 GLEAN promoter 152021 153020 0.969581 - . ID=CGI_10012490; scaffold550 GLEAN promoter 163481 164480 0.999672 + . ID=CGI_10012491; scaffold550 GLEAN mRNA 164481 167401 0.999672 + . ID=CGI_10012491; scaffold550 GLEAN mRNA 171091 187399 0.999676 - . ID=CGI_10012492; scaffold550 GLEAN promoter 187400 188399 0.999676 - . ID=CGI_10012492; scaffold550 WUBlastX DNA_TcMar-Tc1 188245 188838 120 + . . scaffold550 WUBlastX DNA_TcMar-Tc1 188338 188850 141 + . . scaffold550 WUBlastX DNA_TcMar-Tc1 188437 188847 232 + . . scaffold550 WUBlastX DNA_TcMar-Tc1 188871 189011 74 + . . scaffold550 GLEAN promoter 191301 192300 0.634785 + . ID=CGI_10012493; scaffold550 GLEAN mRNA 192301 204322 0.634785 + . ID=CGI_10012493; scaffold550 WUBlastX LTR_Gypsy 192469 193500 304 - . . scaffold550 WUBlastX LTR_Gypsy 192658 193503 495 - . . scaffold550 WUBlastX LTR_Gypsy 193529 193993 294 - . . scaffold550 WUBlastX LTR_Gypsy 193655 194092 148 - . . scaffold550 WUBlastX LTR_Gypsy 194008 194847 132 - . . scaffold550 WUBlastX LTR_Gypsy 194263 194850 147 - . . scaffold550 WUBlastX LTR_Gypsy 195197 195304 24 - . . scaffold550 TRF Tandem_Repeat 197164 197265 170 + . . scaffold550 GLEAN mRNA 204385 208296 0.999675 - . ID=CGI_10012494; scaffold550 GLEAN promoter 208297 209296 0.999675 - . ID=CGI_10012494; scaffold550 TRF Tandem_Repeat 215703 215764 97 + . . scaffold550 TRF Tandem_Repeat 254573 255247 671 + . . scaffold550 GLEAN mRNA 257305 257961 0.999663 - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 257392 258024 275 - . . scaffold550 WUBlastX DNA_Academ 257957 258205 87 - . . scaffold550 GLEAN promoter 257962 258961 0.999663 - . ID=CGI_10012495; scaffold550 WUBlastX DNA_Academ 258059 258244 65 - . . scaffold550 TRF Tandem_Repeat 258245 258385 84 + . . scaffold550 TRF Tandem_Repeat 259423 259562 146 + . . scaffold550 WUBlastX DNA_Academ 259693 260319 448 - . . scaffold550 GLEAN mRNA 260447 260869 0.579462 - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 260459 261139 231 - . . scaffold550 WUBlastX DNA_Academ 260564 261124 350 - . . scaffold550 GLEAN promoter 260870 261869 0.579462 - . ID=CGI_10012496; scaffold550 WUBlastX DNA_Academ 261168 261380 133 - . . scaffold550 WUBlastX DNA_Academ 261385 262245 343 - . . scaffold550 TRF Tandem_Repeat 266731 266776 92 + . . scaffold550 WUBlastX LINE_L1-Tx1 282776 282955 29 - . . scaffold550 TRF Tandem_Repeat 285720 286740 1058 + . . scaffold550 WUBlastX LTR_Ngaro 312624 312677 47 - . . scaffold550 WUBlastX LTR_Ngaro 312636 312686 29 - . . scaffold550 WUBlastX LTR_Ngaro 312686 313528 224 - . . scaffold550 WUBlastX LTR_Ngaro 313534 314247 403 - . . scaffold550 WUBlastX LTR_Ngaro 314043 314927 597 - . . scaffold550 WUBlastX LTR_Ngaro 315096 315584 120 - . . scaffold550 WUBlastX LTR_Gypsy 324874 325569 162 - . . scaffold550 WUBlastX LTR_Gypsy 325093 325569 195 - . . scaffold550 WUBlastX LTR_Gypsy 325470 325589 31 - . . scaffold552 GLEAN mRNA 1199 7402 1 - . ID=CGI_10009317; scaffold552 TRF Tandem_Repeat 3587 3644 107 + . . scaffold552 GLEAN promoter 7403 8402 1 - . ID=CGI_10009317; scaffold552 TRF Tandem_Repeat 19093 19207 59 + . . scaffold552 WUBlastX LINE_RTE-X 26441 26530 26 + . . scaffold552 WUBlastX LINE_RTE-BovB 26511 26696 30 + . . scaffold552 WUBlastX LINE_RTE-X 26544 26675 64 + . . scaffold552 WUBlastX LINE_RTE-X 26544 26714 63 + . . scaffold552 WUBlastX LINE_RTE-X 26722 27624 400 + . . scaffold552 WUBlastX LINE_RTE-X 27157 27786 128 + . . scaffold552 WUBlastX LINE_RTE-X 27627 27995 96 + . . scaffold552 WUBlastX LINE_RTE-X 32322 32657 161 + . . scaffold552 WUBlastX LINE_RTE-X 32409 32702 142 + . . scaffold552 WUBlastX LINE_RTE-X 32675 33304 132 + . . scaffold552 WUBlastX LINE_RTE-X 33300 33554 32 + . . scaffold552 WUBlastX LINE_RTE-X 33306 33485 42 + . . scaffold552 GLEAN promoter 35466 36465 0.991079 + . ID=CGI_10009318; scaffold552 GLEAN mRNA 36466 45420 0.991079 + . ID=CGI_10009318; scaffold552 TRF Tandem_Repeat 38460 38494 70 + . . scaffold552 TRF Tandem_Repeat 41911 41951 55 + . . scaffold552 TRF Tandem_Repeat 44873 44946 148 + . . scaffold552 GLEAN promoter 47930 48929 0.991706 + . ID=CGI_10009319; scaffold552 GLEAN mRNA 48930 53796 0.991706 + . ID=CGI_10009319; scaffold552 TRF Tandem_Repeat 49579 49621 77 + . . scaffold552 GLEAN mRNA 56382 57365 0.999076 - . ID=CGI_10009320; scaffold552 GLEAN promoter 57366 58365 0.999076 - . ID=CGI_10009320; scaffold552 TRF Tandem_Repeat 62106 62978 1213 + . . scaffold552 WUBlastX LTR_DIRS 66001 66255 87 - . . scaffold552 WUBlastX LTR_DIRS 66055 66255 92 - . . scaffold552 WUBlastX LTR_DIRS 66055 66333 87 - . . scaffold552 GLEAN promoter 68612 69611 0.367121 + . ID=CGI_10009321; scaffold552 WUBlastX LINE_L2 69324 69548 102 - . . scaffold552 GLEAN mRNA 69612 73670 0.367121 + . ID=CGI_10009321; scaffold552 WUBlastX LTR_DIRS 70403 70741 96 + . . scaffold552 WUBlastX LTR_DIRS 70424 70669 100 + . . scaffold552 TRF Tandem_Repeat 74192 74814 546 + . . scaffold552 TRF Tandem_Repeat 74192 74570 589 + . . scaffold552 WUBlastX LINE_CR1-L2 74885 75349 276 - . . scaffold552 WUBlastX LINE_L2 74885 75457 127 - . . scaffold552 WUBlastX LINE_L2 75750 75797 22 - . . scaffold552 TRF Tandem_Repeat 76667 76752 58 + . . scaffold552 TRF Tandem_Repeat 79884 80751 1214 + . . scaffold552 TRF Tandem_Repeat 81766 81895 61 + . . scaffold552 TRF Tandem_Repeat 83625 83682 55 + . . scaffold552 TRF Tandem_Repeat 83626 83682 71 + . . scaffold552 TRF Tandem_Repeat 92405 92454 91 + . . scaffold552 TRF Tandem_Repeat 99198 99247 100 + . . scaffold552 TRF Tandem_Repeat 108708 108738 53 + . . scaffold552 TRF Tandem_Repeat 108953 109864 1285 + . . scaffold552 TRF Tandem_Repeat 110902 110944 50 + . . scaffold552 GLEAN promoter 115170 116169 0.733494 + . ID=CGI_10009322; scaffold552 GLEAN mRNA 116170 116397 0.733494 + . ID=CGI_10009322; scaffold552 TRF Tandem_Repeat 120408 120589 78 + . . scaffold552 TRF Tandem_Repeat 126328 126380 106 + . . scaffold552 TRF Tandem_Repeat 127223 127380 104 + . . scaffold552 TRF Tandem_Repeat 127223 127380 127 + . . scaffold552 TRF Tandem_Repeat 129227 129443 118 + . . scaffold552 TRF Tandem_Repeat 130518 131109 891 + . . scaffold552 TRF Tandem_Repeat 132004 132082 158 + . . scaffold552 GLEAN mRNA 132519 143634 0.93728 - . ID=CGI_10009323; scaffold552 GLEAN promoter 143635 144634 0.93728 - . ID=CGI_10009323; scaffold552 WUBlastX DNA_hAT-hATw 145412 146023 88 - . . scaffold552 WUBlastX DNA_hAT-hATw 145415 146350 30 - . . scaffold552 GLEAN promoter 149972 150971 0.558197 + . ID=CGI_10009324; scaffold552 GLEAN mRNA 150972 157974 0.558197 + . ID=CGI_10009324; scaffold552 GLEAN promoter 157159 158158 1 + . ID=CGI_10009325; scaffold552 GLEAN mRNA 158159 180316 1 + . ID=CGI_10009325; scaffold552 TRF Tandem_Repeat 178430 178479 73 + . . scaffold552 WUBlastX LINE_RTE-X 179228 179470 48 - . . scaffold552 WUBlastX LINE_RTE-X 179598 179645 21 - . . scaffold552 GLEAN mRNA 187491 194597 0.997832 - . ID=CGI_10009326; scaffold552 TRF Tandem_Repeat 191292 192811 2170 + . . scaffold552 TRF Tandem_Repeat 192973 193034 72 + . . scaffold552 GLEAN promoter 193949 194948 0.99985 + . ID=CGI_10009327; scaffold552 GLEAN promoter 194598 195597 0.997832 - . ID=CGI_10009326; scaffold552 GLEAN mRNA 194949 202556 0.99985 + . ID=CGI_10009327; scaffold552 TRF Tandem_Repeat 198771 198817 94 + . . scaffold552 TRF Tandem_Repeat 199605 199801 234 + . . scaffold552 GLEAN mRNA 205112 225211 0.999676 - . ID=CGI_10009328; scaffold552 GLEAN promoter 225212 226211 0.999676 - . ID=CGI_10009328; scaffold552 TRF Tandem_Repeat 228016 228421 611 + . . scaffold556 GLEAN promoter 1 517 0.999999 + . ID=CGI_10016788; scaffold556 WUBlastX LTR_Pao 2 1060 1028 + . . scaffold556 GLEAN mRNA 518 1066 0.999999 + . ID=CGI_10016788; scaffold556 GLEAN promoter 5145 6144 0.999921 + . ID=CGI_10016789; scaffold556 GLEAN mRNA 6145 15888 0.999921 + . ID=CGI_10016789; scaffold556 GLEAN mRNA 19202 24398 0.650997 - . ID=CGI_10016790; scaffold556 TRF Tandem_Repeat 20863 20906 72 + . . scaffold556 TRF Tandem_Repeat 23282 23342 65 + . . scaffold556 TRF Tandem_Repeat 23282 23342 74 + . . scaffold556 GLEAN promoter 24399 25398 0.650997 - . ID=CGI_10016790; scaffold556 GLEAN promoter 33434 34433 0.559451 + . ID=CGI_10016792; scaffold556 GLEAN mRNA 34434 35327 0.559451 + . ID=CGI_10016792; scaffold556 WUBlastX LINE_L1 35718 35921 26 - . . scaffold556 WUBlastX LINE_L1-Tx1 35828 36931 26 - . . scaffold556 WUBlastX LINE_L1-Tx1 36515 36910 132 - . . scaffold556 WUBlastX LINE_L1-Tx1 36608 36928 135 - . . scaffold556 WUBlastX LINE_L1-Tx1 36859 37839 448 - . . scaffold556 WUBlastX LINE_L1-Tx1 37808 38251 191 - . . scaffold556 WUBlastX LINE_CR1 38275 38751 102 - . . scaffold556 WUBlastX LINE_L1 38644 38772 29 - . . scaffold556 GLEAN promoter 45984 46983 0.999372 + . ID=CGI_10016793; scaffold556 GLEAN mRNA 46984 47232 0.999372 + . ID=CGI_10016793; scaffold556 GLEAN mRNA 48682 48891 0.999663 - . ID=CGI_10016794; scaffold556 GLEAN promoter 48892 49891 0.999663 - . ID=CGI_10016794; scaffold556 TRF Tandem_Repeat 52774 52828 110 + . . scaffold556 TRF Tandem_Repeat 54657 54710 64 + . . scaffold556 TRF Tandem_Repeat 61864 62002 154 + . . scaffold556 GLEAN mRNA 67255 76250 1 - . ID=CGI_10016795; scaffold556 GLEAN promoter 76251 77250 1 - . ID=CGI_10016795; scaffold556 GLEAN mRNA 77924 87495 0.999976 - . ID=CGI_10016796; scaffold556 TRF Tandem_Repeat 78254 78302 98 + . . scaffold556 GLEAN promoter 87496 88495 0.999976 - . ID=CGI_10016796; scaffold556 TRF Tandem_Repeat 110045 110113 138 + . . scaffold556 WUBlastX LINE_RTE-X 110732 110890 30 - . . scaffold556 WUBlastX LINE_L2 111528 111632 25 - . . scaffold556 WUBlastX LINE_RTE-BovB 111738 111821 26 - . . scaffold556 WUBlastX LINE_RTE-BovB 111744 111845 24 - . . scaffold556 WUBlastX LINE_RTE-X 111747 111815 27 - . . scaffold556 WUBlastX LINE_RTE-RTE 111845 112078 41 - . . scaffold556 WUBlastX LINE_RTE-RTE 111845 112150 24 - . . scaffold556 WUBlastX LINE_RTE-RTE 111845 112033 64 - . . scaffold556 WUBlastX LINE_L2 112155 112250 20 - . . scaffold556 GLEAN mRNA 115085 132303 0.999675 - . ID=CGI_10016797; scaffold556 GLEAN promoter 132304 133303 0.999675 - . ID=CGI_10016797; scaffold556 TRF Tandem_Repeat 152834 153090 433 + . . scaffold556 TRF Tandem_Repeat 157392 157442 57 + . . scaffold556 GLEAN promoter 158083 159082 1 + . ID=CGI_10016798; scaffold556 GLEAN mRNA 159083 160060 1 + . ID=CGI_10016798; scaffold556 GLEAN mRNA 159571 159753 1 - . ID=CGI_10016799; scaffold556 GLEAN promoter 159754 160753 1 - . ID=CGI_10016799; scaffold556 TRF Tandem_Repeat 168016 168944 1606 + . . scaffold556 GLEAN promoter 177313 178312 0.999676 + . ID=CGI_10016800; scaffold556 GLEAN mRNA 178313 184493 0.999676 + . ID=CGI_10016800; scaffold556 TRF Tandem_Repeat 181986 182130 193 + . . scaffold556 TRF Tandem_Repeat 182558 182600 68 + . . scaffold556 GLEAN promoter 184480 185479 0.992883 + . ID=CGI_10016801; scaffold556 GLEAN mRNA 185480 192751 0.992883 + . ID=CGI_10016801; scaffold556 GLEAN mRNA 194019 202410 0.999351 - . ID=CGI_10016802; scaffold556 WUBlastX LINE_L1-Tx1 194261 194437 53 + . . scaffold556 WUBlastX LINE_L1 194300 194449 69 + . . scaffold556 WUBlastX LINE_L1-Tx1 194300 194506 49 + . . scaffold556 WUBlastX LINE_L1-Tx1 194506 194718 70 + . . scaffold556 GLEAN promoter 202411 203410 0.999351 - . ID=CGI_10016802; scaffold556 GLEAN mRNA 220854 242738 0.44629 - . ID=CGI_10016803; scaffold556 TRF Tandem_Repeat 222614 223414 1350 + . . scaffold556 TRF Tandem_Repeat 223428 223513 118 + . . scaffold556 TRF Tandem_Repeat 223428 223513 145 + . . scaffold556 TRF Tandem_Repeat 237379 237495 137 + . . scaffold556 TRF Tandem_Repeat 240679 241160 784 + . . scaffold556 GLEAN promoter 242739 243738 0.44629 - . ID=CGI_10016803; scaffold556 TRF Tandem_Repeat 260421 260465 90 + . . scaffold556 GLEAN mRNA 261263 263541 1 - . ID=CGI_10016804; scaffold556 GLEAN promoter 263542 264541 1 - . ID=CGI_10016804; scaffold556 GLEAN mRNA 265494 265661 0.618186 - . ID=CGI_10016805; scaffold556 GLEAN promoter 265662 266661 0.618186 - . ID=CGI_10016805; scaffold556 TRF Tandem_Repeat 271580 271684 112 + . . scaffold556 GLEAN promoter 271937 272936 0.993732 + . ID=CGI_10016807; scaffold556 GLEAN mRNA 272202 380485 0.387115 - . ID=CGI_10016806; scaffold556 GLEAN mRNA 272937 276043 0.993732 + . ID=CGI_10016807; scaffold556 TRF Tandem_Repeat 278229 278274 51 + . . scaffold556 WUBlastX LINE_RTE-X 280204 280311 26 + . . scaffold556 TRF Tandem_Repeat 329657 331922 2263 + . . scaffold556 TRF Tandem_Repeat 364102 370478 12583 + . . scaffold556 TRF Tandem_Repeat 371620 371650 53 + . . scaffold556 GLEAN promoter 380486 381485 0.387115 - . ID=CGI_10016806; scaffold556 GLEAN mRNA 381055 461901 0.212963 - . ID=CGI_10016808; scaffold556 WUBlastX LTR_Copia 387960 388016 23 - . . scaffold556 TRF Tandem_Repeat 417324 417421 137 + . . scaffold556 TRF Tandem_Repeat 436671 437018 402 + . . scaffold556 TRF Tandem_Repeat 436671 437003 277 + . . scaffold556 TRF Tandem_Repeat 449656 449852 313 + . . scaffold556 TRF Tandem_Repeat 456822 456866 65 + . . scaffold556 GLEAN promoter 461902 462901 0.212963 - . ID=CGI_10016808; scaffold556 GLEAN promoter 462154 463153 1 + . ID=CGI_10016809; scaffold556 GLEAN mRNA 463154 464218 1 + . ID=CGI_10016809; scaffold556 GLEAN mRNA 473541 475093 0.993983 - . ID=CGI_10016810; scaffold556 GLEAN promoter 475094 476093 0.993983 - . ID=CGI_10016810; scaffold556 GLEAN mRNA 478326 478709 0.999821 - . ID=CGI_10016811; scaffold556 GLEAN promoter 478710 479709 0.999821 - . ID=CGI_10016811; scaffold557 GLEAN promoter 1 152 1 + . ID=CGI_10017962; scaffold557 GLEAN mRNA 153 6375 1 + . ID=CGI_10017962; scaffold557 TRF Tandem_Repeat 2865 3524 898 + . . scaffold557 GLEAN promoter 5995 6994 1 + . ID=CGI_10017963; scaffold557 GLEAN mRNA 6995 14701 1 + . ID=CGI_10017963; scaffold557 GLEAN mRNA 17810 25381 1 - . ID=CGI_10017964; scaffold557 TRF Tandem_Repeat 18129 18473 302 + . . scaffold557 TRF Tandem_Repeat 22298 22346 50 + . . scaffold557 TRF Tandem_Repeat 23494 24356 1222 + . . scaffold557 TRF Tandem_Repeat 24601 24648 96 + . . scaffold557 GLEAN promoter 25382 26381 1 - . ID=CGI_10017964; scaffold557 TRF Tandem_Repeat 39395 39437 86 + . . scaffold557 TRF Tandem_Repeat 39496 39540 90 + . . scaffold557 GLEAN promoter 42775 43774 1 + . ID=CGI_10017965; scaffold557 GLEAN mRNA 43775 45509 1 + . ID=CGI_10017965; scaffold557 GLEAN mRNA 47116 83012 0.949718 - . ID=CGI_10017966; scaffold557 TRF Tandem_Repeat 54313 54891 952 + . . scaffold557 TRF Tandem_Repeat 54313 54891 989 + . . scaffold557 TRF Tandem_Repeat 59965 60259 527 + . . scaffold557 TRF Tandem_Repeat 60302 60703 732 + . . scaffold557 TRF Tandem_Repeat 62339 64006 1150 + . . scaffold557 TRF Tandem_Repeat 62352 64006 1475 + . . scaffold557 TRF Tandem_Repeat 62352 64006 1347 + . . scaffold557 TRF Tandem_Repeat 64790 64938 97 + . . scaffold557 TRF Tandem_Repeat 65917 66711 931 + . . scaffold557 WUBlastX LINE_L1-Tx1 68165 68524 49 - . . scaffold557 TRF Tandem_Repeat 72590 73510 1227 + . . scaffold557 TRF Tandem_Repeat 72590 73510 1254 + . . scaffold557 TRF Tandem_Repeat 72590 73510 1270 + . . scaffold557 GLEAN promoter 83013 84012 0.949718 - . ID=CGI_10017966; scaffold557 WUBlastX LINE_L1 85847 85954 28 + . . scaffold557 WUBlastX LINE_L1-Tx1 85865 86317 120 + . . scaffold557 WUBlastX LINE_L1-Tx1 85948 87042 78 + . . scaffold557 WUBlastX LINE_L1-Tx1 85948 86823 115 + . . scaffold557 WUBlastX LINE_L1-Tx1 87431 87640 25 + . . scaffold557 WUBlastX LINE_L1 87464 87850 23 + . . scaffold557 WUBlastX LINE_L1-Tx1 87488 87769 57 + . . scaffold557 WUBlastX DNA_Crypton 91790 92035 73 + . . scaffold557 WUBlastX DNA_Crypton 92771 92911 24 + . . scaffold557 TRF Tandem_Repeat 93887 93929 59 + . . scaffold557 WUBlastX DNA_TcMar-Marin 94851 95072 73 + . . scaffold557 TRF Tandem_Repeat 128112 128144 66 + . . scaffold557 WUBlastX LINE_L1-Tx1 128182 129303 205 - . . scaffold557 WUBlastX LINE_L1 129743 129889 23 - . . scaffold557 WUBlastX LINE_L1-Tx1 129848 129916 20 - . . scaffold557 TRF Tandem_Repeat 130570 130631 124 + . . scaffold557 TRF Tandem_Repeat 139173 139205 66 + . . scaffold557 TRF Tandem_Repeat 142154 142195 84 + . . scaffold557 TRF Tandem_Repeat 142489 142585 194 + . . scaffold557 TRF Tandem_Repeat 142583 142613 62 + . . scaffold557 TRF Tandem_Repeat 143015 143121 178 + . . scaffold557 WUBlastX LINE_RTE-BovB 147681 147866 57 - . . scaffold557 WUBlastX LINE_RTE-BovB 147753 148202 84 - . . scaffold557 TRF Tandem_Repeat 150508 150618 96 + . . scaffold557 WUBlastX LINE_L2 153236 153661 62 - . . scaffold557 WUBlastX LINE_Rex-Babar 153625 154152 115 - . . scaffold557 WUBlastX LINE_L2 153709 154236 118 - . . scaffold557 WUBlastX LINE_L2 153712 154155 153 - . . scaffold557 WUBlastX LINE_Jockey 153721 154392 46 - . . scaffold557 WUBlastX LINE_CR1 153985 154284 55 - . . scaffold557 WUBlastX LINE_L2 154818 154889 21 - . . scaffold557 TRF Tandem_Repeat 156008 156065 116 + . . scaffold557 TRF Tandem_Repeat 156324 156395 144 + . . scaffold557 WUBlastX LINE_RTE-X 170433 170699 53 - . . scaffold557 WUBlastX LINE_RTE-X 170478 170804 32 - . . scaffold557 WUBlastX LINE_RTE-X 170478 170714 103 - . . scaffold557 WUBlastX LINE_RTE-X 171247 171522 53 - . . scaffold557 WUBlastX LINE_RTE-X 171250 171849 33 - . . scaffold557 WUBlastX LINE_L2 171652 171858 34 - . . scaffold557 WUBlastX LINE_RTE-X 172087 172209 22 - . . scaffold557 WUBlastX LINE_CR1-L2 172804 173487 103 + . . scaffold557 WUBlastX LINE_CR1-L2 172852 173613 60 + . . scaffold557 TRF Tandem_Repeat 176195 176271 61 + . . scaffold557 WUBlastX LTR_DIRS 206709 206957 112 + . . scaffold557 WUBlastX LTR_DIRS? 206947 207618 407 + . . scaffold557 WUBlastX LTR_Gypsy 209235 209543 91 + . . scaffold557 WUBlastX LTR_Gypsy 210039 210167 59 + . . scaffold557 WUBlastX LTR_Gypsy 210217 210432 54 + . . scaffold557 WUBlastX LTR_Gypsy 210410 210748 83 + . . scaffold557 WUBlastX LTR_Gypsy 210467 210718 178 + . . scaffold557 WUBlastX LTR_Gypsy 210708 211283 473 + . . scaffold557 WUBlastX LTR_Gypsy 210720 212078 346 + . . scaffold557 WUBlastX LTR_Gypsy 210726 211832 367 + . . scaffold557 WUBlastX LTR_Gypsy 212074 212493 258 + . . scaffold557 TRF Tandem_Repeat 214774 214815 52 + . . scaffold557 TRF Tandem_Repeat 215088 215150 108 + . . scaffold557 TRF Tandem_Repeat 219975 220009 52 + . . scaffold557 TRF Tandem_Repeat 220179 220993 1265 + . . scaffold557 GLEAN mRNA 223283 229427 0.999999 - . ID=CGI_10017967; scaffold557 TRF Tandem_Repeat 226543 226792 428 + . . scaffold557 GLEAN promoter 229428 230427 0.999999 - . ID=CGI_10017967; scaffold557 GLEAN promoter 230316 231315 0.999999 + . ID=CGI_10017968; scaffold557 GLEAN mRNA 231316 247225 0.999999 + . ID=CGI_10017968; scaffold557 GLEAN mRNA 249989 251125 1 - . ID=CGI_10017969; scaffold557 GLEAN promoter 251126 252125 1 - . ID=CGI_10017969; scaffold557 GLEAN mRNA 252377 261353 0.999716 - . ID=CGI_10017970; scaffold557 TRF Tandem_Repeat 258624 258728 86 + . . scaffold557 TRF Tandem_Repeat 260311 260407 77 + . . scaffold557 GLEAN promoter 261354 262353 0.999716 - . ID=CGI_10017970; scaffold557 WUBlastX LINE_L2 266647 266934 63 - . . scaffold557 TRF Tandem_Repeat 267961 268522 944 + . . scaffold557 GLEAN promoter 271121 272120 0.430308 + . ID=CGI_10017971; scaffold557 GLEAN mRNA 272121 276768 0.430308 + . ID=CGI_10017971; scaffold557 TRF Tandem_Repeat 275960 276032 60 + . . scaffold557 TRF Tandem_Repeat 275985 276030 58 + . . scaffold557 GLEAN mRNA 276323 276529 0.776794 - . ID=CGI_10017972; scaffold557 GLEAN promoter 276530 277529 0.776794 - . ID=CGI_10017972; scaffold557 GLEAN mRNA 286232 287487 1 - . ID=CGI_10017973; scaffold557 GLEAN promoter 287488 288487 1 - . ID=CGI_10017973; scaffold557 TRF Tandem_Repeat 288955 290282 1129 + . . scaffold557 GLEAN promoter 299271 300270 0.660878 + . ID=CGI_10017974; scaffold557 GLEAN mRNA 300271 306899 0.660878 + . ID=CGI_10017974; scaffold557 TRF Tandem_Repeat 318438 318493 112 + . . scaffold557 GLEAN promoter 330570 331569 0.999064 + . ID=CGI_10017975; scaffold557 GLEAN mRNA 331570 337138 0.999064 + . ID=CGI_10017975; scaffold557 WUBlastX LINE_Penelope 339836 340243 57 - . . scaffold557 GLEAN promoter 348755 349754 1 + . ID=CGI_10017976; scaffold557 GLEAN mRNA 349755 354236 1 + . ID=CGI_10017976; scaffold557 WUBlastX LINE_RTE-X 358935 359408 34 + . . scaffold557 WUBlastX LINE_RTE-X 358950 359282 110 + . . scaffold557 WUBlastX LINE_RTE-X 358968 359342 49 + . . scaffold557 TRF Tandem_Repeat 363227 363251 50 + . . scaffold557 GLEAN mRNA 364423 369316 0.975044 - . ID=CGI_10017977; scaffold557 WUBlastX DNA_Chapaev 366445 366657 34 - . . scaffold557 GLEAN promoter 369317 370316 0.975044 - . ID=CGI_10017977; scaffold557 TRF Tandem_Repeat 374881 374920 80 + . . scaffold557 TRF Tandem_Repeat 374920 374952 66 + . . scaffold557 TRF Tandem_Repeat 383195 383261 134 + . . scaffold557 WUBlastX LINE_L1-Tx1 388350 388985 106 - . . scaffold557 WUBlastX LINE_L1-Tx1 388401 388892 186 - . . scaffold557 GLEAN mRNA 389014 397940 0.685724 - . ID=CGI_10017978; scaffold557 WUBlastX LINE_I 389110 390012 23 - . . scaffold557 WUBlastX LINE_L1 389434 389763 28 - . . scaffold557 WUBlastX LINE_CR1 389590 390363 190 - . . scaffold557 GLEAN promoter 390909 391908 0.93441 + . ID=CGI_10017979; scaffold557 GLEAN mRNA 391909 392469 0.93441 + . ID=CGI_10017979; scaffold557 WUBlastX RC_Helitron 397509 397940 73 - . . scaffold557 GLEAN promoter 397941 398940 0.685724 - . ID=CGI_10017978; scaffold557 TRF Tandem_Repeat 398839 398876 60 + . . scaffold557 WUBlastX DNA_TcMar-Pogo 400264 400524 75 + . . scaffold557 WUBlastX DNA_TcMar-Tigge 400312 400563 51 + . . scaffold557 GLEAN promoter 400528 401527 0.99928 + . ID=CGI_10017980; scaffold557 GLEAN mRNA 401528 413927 0.99928 + . ID=CGI_10017980; scaffold557 WUBlastX LINE_Jockey 401696 401776 21 + . . scaffold557 WUBlastX LINE_L1 401779 402081 39 + . . scaffold557 WUBlastX LINE_L1 401965 402090 54 + . . scaffold557 WUBlastX LINE_L1-Tx1 401993 402940 533 + . . scaffold557 WUBlastX LINE_L1-Tx1 402925 403446 210 + . . scaffold557 WUBlastX LINE_L1-Tx1 403446 403691 50 + . . scaffold557 WUBlastX LINE_L1 403449 403592 72 + . . scaffold557 TRF Tandem_Repeat 405853 405885 66 + . . scaffold557 TRF Tandem_Repeat 408825 408858 68 + . . scaffold557 TRF Tandem_Repeat 411290 411516 346 + . . scaffold557 GLEAN promoter 413508 414507 1 + . ID=CGI_10017981; scaffold557 GLEAN mRNA 414508 417045 1 + . ID=CGI_10017981; scaffold557 GLEAN promoter 421237 422236 0.99819 + . ID=CGI_10017982; scaffold557 GLEAN mRNA 422237 450410 0.99819 + . ID=CGI_10017982; scaffold557 TRF Tandem_Repeat 429425 429569 265 + . . scaffold557 TRF Tandem_Repeat 449324 449373 100 + . . scaffold557 TRF Tandem_Repeat 455447 455474 56 + . . scaffold557 TRF Tandem_Repeat 455532 455576 90 + . . scaffold557 GLEAN mRNA 456449 458627 0.403412 - . ID=CGI_10017983; scaffold557 GLEAN promoter 458628 459627 0.403412 - . ID=CGI_10017983; scaffold557 TRF Tandem_Repeat 461295 461329 70 + . . scaffold557 TRF Tandem_Repeat 461327 461365 78 + . . scaffold557 GLEAN promoter 462723 463722 0.984791 + . ID=CGI_10017984; scaffold557 GLEAN mRNA 463723 465886 0.984791 + . ID=CGI_10017984; scaffold557 TRF Tandem_Repeat 464673 464724 104 + . . scaffold557 TRF Tandem_Repeat 467633 467809 184 + . . scaffold557 GLEAN mRNA 467831 475061 0.999177 - . ID=CGI_10017985; scaffold557 GLEAN promoter 468662 469661 0.989725 + . ID=CGI_10017986; scaffold557 GLEAN mRNA 469662 477340 0.989725 + . ID=CGI_10017986; scaffold557 TRF Tandem_Repeat 470402 470461 120 + . . scaffold557 GLEAN promoter 475062 476061 0.999177 - . ID=CGI_10017985; scaffold557 GLEAN promoter 477626 478625 0.754354 + . ID=CGI_10017987; scaffold557 GLEAN mRNA 478626 491039 0.754354 + . ID=CGI_10017987; scaffold557 TRF Tandem_Repeat 480086 480155 52 + . . scaffold557 GLEAN promoter 494612 495611 0.508737 + . ID=CGI_10017988; scaffold557 GLEAN mRNA 495612 507480 0.508737 + . ID=CGI_10017988; scaffold557 TRF Tandem_Repeat 495983 496042 120 + . . scaffold557 TRF Tandem_Repeat 500807 500852 92 + . . scaffold557 TRF Tandem_Repeat 507928 508189 506 + . . scaffold557 WUBlastX DNA_Maverick 508844 508972 79 + . . scaffold557 GLEAN promoter 515492 516491 0.999548 + . ID=CGI_10017990; scaffold557 GLEAN mRNA 516492 516908 0.999548 + . ID=CGI_10017990; scaffold557 GLEAN mRNA 517497 527707 0.973204 - . ID=CGI_10017992; scaffold557 TRF Tandem_Repeat 518949 519235 459 + . . scaffold557 TRF Tandem_Repeat 519368 519637 231 + . . scaffold557 TRF Tandem_Repeat 519719 520032 175 + . . scaffold557 WUBlastX DNA_Maverick 521832 522035 43 - . . scaffold557 WUBlastX DNA_Maverick 522082 523521 51 - . . scaffold557 WUBlastX DNA_Maverick 523012 523521 120 - . . scaffold557 TRF Tandem_Repeat 524180 524212 66 + . . scaffold557 GLEAN promoter 527708 528707 0.973204 - . ID=CGI_10017992; scaffold559 WUBlastX LTR_Gypsy 6670 7461 436 - . . scaffold559 WUBlastX DNA_Harbinger 14487 14816 57 + . . scaffold559 TRF Tandem_Repeat 16522 16592 142 + . . scaffold559 TRF Tandem_Repeat 18332 18387 112 + . . scaffold559 TRF Tandem_Repeat 20160 20209 100 + . . scaffold559 GLEAN promoter 35227 36226 1 + . ID=CGI_10003340; scaffold559 GLEAN mRNA 36227 37772 1 + . ID=CGI_10003340; scaffold559 WUBlastX DNA_P 36254 36721 46 + . . scaffold559 WUBlastX DNA_P 36254 36535 57 + . . scaffold559 WUBlastX DNA_Kolobok 38017 38742 94 + . . scaffold559 WUBlastX DNA_Kolobok 38044 38547 272 + . . scaffold559 WUBlastX DNA_Kolobok 38674 38913 118 + . . scaffold559 WUBlastX DNA_Kolobok 38972 39274 124 + . . scaffold559 WUBlastX DNA_Kolobok 39426 39605 67 + . . scaffold559 WUBlastX DNA_Kolobok 39642 39794 108 + . . scaffold559 WUBlastX DNA_Kolobok 41087 41242 84 - . . scaffold559 WUBlastX DNA_Kolobok 41339 41494 37 - . . scaffold559 WUBlastX DNA_Kolobok 41360 41545 36 - . . scaffold559 TRF Tandem_Repeat 60892 60924 57 + . . scaffold560 TRF Tandem_Repeat 1 278 398 + . . scaffold560 GLEAN mRNA 2793 16922 0.999375 - . ID=CGI_10008749; scaffold560 GLEAN promoter 6103 7102 1 + . ID=CGI_10008750; scaffold560 GLEAN mRNA 7103 27549 1 + . ID=CGI_10008750; scaffold560 WUBlastX LTR_DIRS 7513 8442 88 - . . scaffold560 TRF Tandem_Repeat 8485 8631 125 + . . scaffold560 TRF Tandem_Repeat 8630 8816 178 + . . scaffold560 TRF Tandem_Repeat 8904 8990 131 + . . scaffold560 TRF Tandem_Repeat 10030 10081 104 + . . scaffold560 TRF Tandem_Repeat 13291 13355 76 + . . scaffold560 TRF Tandem_Repeat 13910 14380 667 + . . scaffold560 GLEAN promoter 16923 17922 0.999375 - . ID=CGI_10008749; scaffold560 WUBlastX LINE_L1-Tx1 30208 30471 24 - . . scaffold560 WUBlastX LINE_L1-Tx1 30343 30471 45 - . . scaffold560 TRF Tandem_Repeat 36539 37691 1458 + . . scaffold560 TRF Tandem_Repeat 37861 37890 53 + . . scaffold560 WUBlastX LINE_L1-Tx1 38926 39072 22 - . . scaffold560 WUBlastX LINE_L1 39033 39077 35 - . . scaffold560 WUBlastX LINE_L1-Tx1 39045 39083 42 - . . scaffold560 WUBlastX LINE_DRE 39065 39400 53 - . . scaffold560 WUBlastX LINE_L1 39143 39409 110 - . . scaffold560 WUBlastX LINE_L1-Tx1 39167 39388 115 - . . scaffold560 WUBlastX LINE_L1 39167 39577 28 - . . scaffold560 WUBlastX LINE_L1 39176 39499 66 - . . scaffold560 GLEAN mRNA 43850 54636 0.715686 - . ID=CGI_10008751; scaffold560 GLEAN promoter 54637 55636 0.715686 - . ID=CGI_10008751; scaffold560 TRF Tandem_Repeat 55820 55881 124 + . . scaffold560 TRF Tandem_Repeat 75069 75129 86 + . . scaffold560 TRF Tandem_Repeat 78747 79100 516 + . . scaffold560 TRF Tandem_Repeat 79471 80152 886 + . . scaffold560 TRF Tandem_Repeat 79471 80152 790 + . . scaffold560 TRF Tandem_Repeat 79471 80152 711 + . . scaffold560 TRF Tandem_Repeat 79897 80064 210 + . . scaffold560 TRF Tandem_Repeat 82383 82448 132 + . . scaffold560 TRF Tandem_Repeat 105521 105553 66 + . . scaffold560 WUBlastX DNA_TcMar-Marin 106256 106429 61 - . . scaffold560 WUBlastX LINE_CR1-L2 120133 120543 45 + . . scaffold560 WUBlastX LINE_L2 120226 120543 100 + . . scaffold560 GLEAN promoter 124765 125764 1 + . ID=CGI_10008752; scaffold560 GLEAN mRNA 125765 134299 1 + . ID=CGI_10008752; scaffold560 GLEAN promoter 133675 134674 0.941337 + . ID=CGI_10008753; scaffold560 GLEAN mRNA 134675 160538 0.941337 + . ID=CGI_10008753; scaffold560 WUBlastX LINE_RTE-X 139743 139967 84 - . . scaffold560 WUBlastX LINE_RTE-X 139806 140036 89 - . . scaffold560 WUBlastX LINE_RTE-X 139815 139979 93 - . . scaffold560 TRF Tandem_Repeat 145002 145124 77 + . . scaffold560 TRF Tandem_Repeat 158391 158495 112 + . . scaffold560 TRF Tandem_Repeat 159640 159744 103 + . . scaffold560 TRF Tandem_Repeat 161358 161443 122 + . . scaffold560 TRF Tandem_Repeat 161757 161808 54 + . . scaffold560 GLEAN mRNA 161934 171969 0.999922 - . ID=CGI_10008754; scaffold560 TRF Tandem_Repeat 168967 169150 242 + . . scaffold560 GLEAN promoter 171970 172969 0.999922 - . ID=CGI_10008754; scaffold560 GLEAN promoter 173004 174003 0.94434 + . ID=CGI_10008755; scaffold560 GLEAN mRNA 174004 174664 0.94434 + . ID=CGI_10008755; scaffold560 GLEAN mRNA 175438 176478 1 - . ID=CGI_10008756; scaffold560 GLEAN promoter 176479 177478 1 - . ID=CGI_10008756; scaffold560 TRF Tandem_Repeat 176515 176563 98 + . . scaffold560 TRF Tandem_Repeat 176992 177208 400 + . . scaffold560 TRF Tandem_Repeat 179109 179796 1175 + . . scaffold560 TRF Tandem_Repeat 179801 179867 71 + . . scaffold560 TRF Tandem_Repeat 179801 179867 98 + . . scaffold560 TRF Tandem_Repeat 179801 179854 90 + . . scaffold560 TRF Tandem_Repeat 182395 182444 57 + . . scaffold560 GLEAN mRNA 184863 201575 0.40521 - . ID=CGI_10008757; scaffold560 TRF Tandem_Repeat 193786 193825 53 + . . scaffold560 TRF Tandem_Repeat 193789 193825 65 + . . scaffold560 TRF Tandem_Repeat 199361 199459 118 + . . scaffold560 GLEAN promoter 201576 202575 0.40521 - . ID=CGI_10008757; scaffold560 GLEAN mRNA 202365 213820 0.999892 - . ID=CGI_10008758; scaffold560 WUBlastX LINE_L1-Tx1 208299 208424 74 + . . scaffold560 TRF Tandem_Repeat 211709 211751 59 + . . scaffold560 GLEAN promoter 213821 214820 0.999892 - . ID=CGI_10008758; scaffold562 TRF Tandem_Repeat 7631 7680 100 + . . scaffold562 TRF Tandem_Repeat 16226 16265 80 + . . scaffold562 TRF Tandem_Repeat 23133 23199 80 + . . scaffold562 TRF Tandem_Repeat 23696 23749 108 + . . scaffold562 TRF Tandem_Repeat 23747 23789 86 + . . scaffold562 TRF Tandem_Repeat 23974 24028 110 + . . scaffold562 TRF Tandem_Repeat 26224 26290 71 + . . scaffold562 TRF Tandem_Repeat 27597 27686 171 + . . scaffold562 TRF Tandem_Repeat 34733 35435 1074 + . . scaffold562 WUBlastX LINE_RTE-X 36764 37429 81 + . . scaffold562 TRF Tandem_Repeat 38869 39378 688 + . . scaffold562 WUBlastX LTR_Gypsy 39428 39856 155 + . . scaffold562 WUBlastX LTR_Gypsy 39536 39859 197 + . . scaffold562 WUBlastX LTR_Gypsy 39572 39919 123 + . . scaffold562 TRF Tandem_Repeat 46999 47077 158 + . . scaffold562 TRF Tandem_Repeat 47464 47549 163 + . . scaffold562 WUBlastX LINE_CR1-L2 49570 50823 770 - . . scaffold562 TRF Tandem_Repeat 51202 51255 99 + . . scaffold562 GLEAN mRNA 51463 52368 1 - . ID=CGI_10016074; scaffold562 GLEAN promoter 52369 53368 1 - . ID=CGI_10016074; scaffold562 WUBlastX LINE_RTE-X 67892 68143 69 + . . scaffold562 WUBlastX LINE_RTE-X 67970 68269 57 + . . scaffold562 WUBlastX LINE_RTE-X 68439 68690 69 + . . scaffold562 WUBlastX LINE_RTE-X 68517 68816 57 + . . scaffold562 GLEAN promoter 73677 74676 0.624164 + . ID=CGI_10016075; scaffold562 GLEAN mRNA 74677 82721 0.624164 + . ID=CGI_10016075; scaffold562 TRF Tandem_Repeat 83176 83239 121 + . . scaffold562 GLEAN mRNA 85704 89722 1 - . ID=CGI_10016076; scaffold562 GLEAN promoter 89723 90722 1 - . ID=CGI_10016076; scaffold562 TRF Tandem_Repeat 90000 90205 186 + . . scaffold562 TRF Tandem_Repeat 90179 90357 146 + . . scaffold562 TRF Tandem_Repeat 90179 90357 207 + . . scaffold562 TRF Tandem_Repeat 93986 94017 64 + . . scaffold562 TRF Tandem_Repeat 98768 98798 53 + . . scaffold562 GLEAN promoter 100945 101944 1 + . ID=CGI_10016077; scaffold562 TRF Tandem_Repeat 101245 101288 88 + . . scaffold562 GLEAN mRNA 101945 107139 1 + . ID=CGI_10016077; scaffold562 GLEAN promoter 108954 109953 0.912118 + . ID=CGI_10016078; scaffold562 GLEAN mRNA 109954 121326 0.912118 + . ID=CGI_10016078; scaffold562 GLEAN promoter 130468 131467 0.558182 + . ID=CGI_10016079; scaffold562 TRF Tandem_Repeat 130989 131224 204 + . . scaffold562 GLEAN mRNA 131468 135906 0.558182 + . ID=CGI_10016079; scaffold562 TRF Tandem_Repeat 133666 133711 51 + . . scaffold562 WUBlastX LTR_Ngaro 140986 141756 317 - . . scaffold562 WUBlastX LTR_Ngaro 141115 141756 388 - . . scaffold562 TRF Tandem_Repeat 177178 177368 147 + . . scaffold562 TRF Tandem_Repeat 178266 178392 132 + . . scaffold562 WUBlastX LTR_Gypsy 180549 180971 68 + . . scaffold562 WUBlastX LTR_Gypsy 180639 184325 2643 + . . scaffold562 GLEAN mRNA 188467 188793 0.999372 - . ID=CGI_10016080; scaffold562 GLEAN promoter 188794 189793 0.999372 - . ID=CGI_10016080; scaffold562 TRF Tandem_Repeat 196554 196654 105 + . . scaffold562 GLEAN mRNA 198924 199205 0.999372 - . ID=CGI_10016082; scaffold562 GLEAN promoter 199206 200205 0.999372 - . ID=CGI_10016082; scaffold562 WUBlastX LTR_Gypsy 199824 200069 54 - . . scaffold562 WUBlastX LTR_Gypsy 199884 200069 75 - . . scaffold562 WUBlastX LTR_Gypsy 200095 200268 42 - . . scaffold562 WUBlastX LTR_ERV1 200213 200563 49 - . . scaffold562 WUBlastX LTR_Gypsy-Cigr 200276 200611 143 - . . scaffold562 WUBlastX LTR_Gypsy-Cigr 200333 200734 159 - . . scaffold562 WUBlastX LTR_Gypsy 200339 200611 190 - . . scaffold562 WUBlastX LTR_Foamy 201018 201176 23 - . . scaffold562 WUBlastX LTR_Gypsy 201222 201755 117 - . . scaffold562 WUBlastX LTR_Gypsy 201315 201779 171 - . . scaffold562 WUBlastX LTR_Gypsy 201447 202895 566 - . . scaffold562 WUBlastX LTR_Gypsy-Cigr 202847 204268 649 - . . scaffold562 WUBlastX LTR_Gypsy-Cigr 203987 204373 61 - . . scaffold562 WUBlastX LTR_Gypsy 204017 204448 60 - . . scaffold562 WUBlastX LTR_Gypsy 204592 204678 21 - . . scaffold562 WUBlastX LTR_Gypsy-Cigr 204836 205159 107 - . . scaffold562 TRF Tandem_Repeat 207891 207949 118 + . . scaffold562 TRF Tandem_Repeat 208058 208107 100 + . . scaffold562 GLEAN mRNA 214490 216761 0.777732 - . ID=CGI_10016083; scaffold562 GLEAN promoter 216425 217424 0.999949 + . ID=CGI_10016084; scaffold562 GLEAN promoter 216762 217761 0.777732 - . ID=CGI_10016083; scaffold562 GLEAN mRNA 217425 221887 0.999949 + . ID=CGI_10016084; scaffold562 GLEAN mRNA 223290 224417 1 - . ID=CGI_10016085; scaffold562 GLEAN promoter 224418 225417 1 - . ID=CGI_10016085; scaffold562 GLEAN promoter 226043 227042 0.754735 + . ID=CGI_10016086; scaffold562 GLEAN mRNA 227043 235851 0.754735 + . ID=CGI_10016086; scaffold562 TRF Tandem_Repeat 233585 233639 110 + . . scaffold562 GLEAN promoter 238075 239074 0.999348 + . ID=CGI_10016087; scaffold562 GLEAN mRNA 239075 244114 0.999348 + . ID=CGI_10016087; scaffold562 GLEAN mRNA 240254 244592 0.917231 - . ID=CGI_10016088; scaffold562 GLEAN promoter 244593 245592 0.917231 - . ID=CGI_10016088; scaffold562 TRF Tandem_Repeat 244944 245776 1380 + . . scaffold562 TRF Tandem_Repeat 245895 245998 77 + . . scaffold562 TRF Tandem_Repeat 245895 246098 264 + . . scaffold562 GLEAN promoter 254149 255148 0.999985 + . ID=CGI_10016089; scaffold562 GLEAN mRNA 255149 255922 0.999985 + . ID=CGI_10016089; scaffold562 TRF Tandem_Repeat 279496 279538 86 + . . scaffold562 GLEAN promoter 280521 281520 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 280783 281038 272 + . . scaffold562 TRF Tandem_Repeat 280786 280888 59 + . . scaffold562 TRF Tandem_Repeat 280809 280971 191 + . . scaffold562 TRF Tandem_Repeat 280863 280971 200 + . . scaffold562 TRF Tandem_Repeat 281083 281401 344 + . . scaffold562 GLEAN mRNA 281521 297997 0.448852 + . ID=CGI_10016091; scaffold562 TRF Tandem_Repeat 284774 284899 166 + . . scaffold562 TRF Tandem_Repeat 284774 284899 141 + . . scaffold562 TRF Tandem_Repeat 285144 285182 78 + . . scaffold562 TRF Tandem_Repeat 286099 286134 72 + . . scaffold562 TRF Tandem_Repeat 286379 286514 147 + . . scaffold562 TRF Tandem_Repeat 286379 286514 175 + . . scaffold562 TRF Tandem_Repeat 288884 288989 167 + . . scaffold562 WUBlastX LINE_CR1-L2 296903 297091 70 - . . scaffold562 GLEAN promoter 302233 303232 0.577605 + . ID=CGI_10016092; scaffold562 GLEAN mRNA 303233 304084 0.577605 + . ID=CGI_10016092; scaffold562 GLEAN promoter 305374 306373 0.75511 + . ID=CGI_10016093; scaffold562 GLEAN mRNA 306374 313027 0.75511 + . ID=CGI_10016093; scaffold562 TRF Tandem_Repeat 307660 307742 130 + . . scaffold562 TRF Tandem_Repeat 308575 308612 51 + . . scaffold562 GLEAN promoter 312077 313076 0.685887 + . ID=CGI_10016094; scaffold562 GLEAN mRNA 313077 314704 0.685887 + . ID=CGI_10016094; scaffold562 GLEAN mRNA 316722 318223 1 - . ID=CGI_10016095; scaffold562 GLEAN promoter 317317 318316 1 + . ID=CGI_10016096; scaffold562 GLEAN promoter 318224 319223 1 - . ID=CGI_10016095; scaffold562 GLEAN mRNA 318317 318929 1 + . ID=CGI_10016096; scaffold562 GLEAN mRNA 319876 329147 1 - . ID=CGI_10016097; scaffold562 TRF Tandem_Repeat 324202 325850 2089 + . . scaffold562 GLEAN promoter 329148 330147 1 - . ID=CGI_10016097; scaffold562 GLEAN promoter 330154 331153 0.434141 + . ID=CGI_10016098; scaffold562 GLEAN mRNA 331154 337938 0.434141 + . ID=CGI_10016098; scaffold562 TRF Tandem_Repeat 336624 337495 1268 + . . scaffold562 TRF Tandem_Repeat 340404 340431 56 + . . scaffold562 TRF Tandem_Repeat 344572 344606 70 + . . scaffold562 GLEAN mRNA 346385 350672 1 - . ID=CGI_10016099; scaffold562 GLEAN promoter 349906 350905 0.500732 + . ID=CGI_10016100; scaffold562 GLEAN promoter 350673 351672 1 - . ID=CGI_10016099; scaffold562 GLEAN mRNA 350906 384674 0.500732 + . ID=CGI_10016100; scaffold562 TRF Tandem_Repeat 355095 355124 60 + . . scaffold562 TRF Tandem_Repeat 363519 363566 96 + . . scaffold562 TRF Tandem_Repeat 392018 392066 57 + . . scaffold562 GLEAN promoter 394761 395760 0.999676 + . ID=CGI_10016101; scaffold562 GLEAN mRNA 395761 416182 0.999676 + . ID=CGI_10016101; scaffold562 TRF Tandem_Repeat 396018 396062 90 + . . scaffold562 WUBlastX LTR_Gypsy 442265 443356 834 + . . scaffold562 WUBlastX LTR_Gypsy 442265 443617 831 + . . scaffold562 WUBlastX DNA_Kolobok-IS4 445715 445966 35 + . . scaffold562 WUBlastX DNA_IS4EU 445829 445966 35 + . . scaffold562 TRF Tandem_Repeat 446089 446137 98 + . . scaffold562 WUBlastX DNA_Kolobok-IS4 446308 446397 22 + . . scaffold562 WUBlastX DNA_IS4EU 446846 447163 72 + . . scaffold562 WUBlastX DNA_IS4EU 447039 447818 362 + . . scaffold562 WUBlastX DNA_IS4EU 447159 447833 431 + . . scaffold562 WUBlastX DNA_IS4EU 448199 448408 46 - . . scaffold562 WUBlastX DNA_IS4EU 448650 448901 55 - . . scaffold562 WUBlastX DNA_Kolobok-IS4 449106 449537 64 - . . scaffold562 WUBlastX DNA_IS4EU 449109 449423 100 - . . scaffold562 TRF Tandem_Repeat 449573 449628 62 + . . scaffold562 TRF Tandem_Repeat 449577 449631 56 + . . scaffold562 WUBlastX DNA_Kolobok-IS4 455388 455525 42 + . . scaffold562 WUBlastX DNA_Kolobok-IS4 455698 455787 39 + . . scaffold562 WUBlastX DNA_IS4EU 456238 456531 37 + . . scaffold562 WUBlastX DNA_Kolobok-IS4 456293 456841 75 + . . scaffold562 WUBlastX DNA_IS4EU 456485 456841 179 + . . scaffold563 TRF Tandem_Repeat 1925 2096 152 + . . scaffold563 TRF Tandem_Repeat 2148 2301 137 + . . scaffold563 WUBlastX DNA_TcMar-Marin 6361 6468 40 + . . scaffold563 WUBlastX DNA_TcMar-Marin 6361 6522 23 + . . scaffold563 WUBlastX DNA_TcMar-Marin 7082 7456 22 + . . scaffold563 WUBlastX DNA_TcMar-Marin 7175 7318 46 + . . scaffold563 WUBlastX DNA_TcMar-Marin 7217 7369 82 + . . scaffold563 WUBlastX DNA_TcMar-Marin 7220 7501 50 + . . scaffold563 TRF Tandem_Repeat 17108 17144 56 + . . scaffold563 TRF Tandem_Repeat 18287 18319 66 + . . scaffold563 TRF Tandem_Repeat 25566 25600 52 + . . scaffold563 GLEAN mRNA 32054 55715 0.362367 - . ID=CGI_10019817; scaffold563 TRF Tandem_Repeat 37560 37680 127 + . . scaffold563 TRF Tandem_Repeat 39353 39389 74 + . . scaffold563 TRF Tandem_Repeat 43539 43578 55 + . . scaffold563 WUBlastX LINE_RTE-X 48535 48783 41 - . . scaffold563 WUBlastX LINE_RTE-X 48922 48978 25 - . . scaffold563 TRF Tandem_Repeat 51201 51254 72 + . . scaffold563 TRF Tandem_Repeat 54336 54399 83 + . . scaffold563 GLEAN promoter 55716 56715 0.362367 - . ID=CGI_10019817; scaffold563 TRF Tandem_Repeat 70558 70593 72 + . . scaffold563 TRF Tandem_Repeat 71490 71529 80 + . . scaffold563 GLEAN promoter 80299 81298 0.99976 + . ID=CGI_10019818; scaffold563 GLEAN mRNA 81299 89476 0.99976 + . ID=CGI_10019818; scaffold563 TRF Tandem_Repeat 82238 82276 69 + . . scaffold563 GLEAN mRNA 87231 87449 0.614441 - . ID=CGI_10019819; scaffold563 GLEAN promoter 87450 88449 0.614441 - . ID=CGI_10019819; scaffold563 GLEAN promoter 88696 89695 0.813969 + . ID=CGI_10019820; scaffold563 GLEAN mRNA 89696 101686 0.813969 + . ID=CGI_10019820; scaffold563 TRF Tandem_Repeat 89934 89983 100 + . . scaffold563 TRF Tandem_Repeat 94357 94474 139 + . . scaffold563 TRF Tandem_Repeat 94375 94474 164 + . . scaffold563 TRF Tandem_Repeat 94907 94942 72 + . . scaffold563 TRF Tandem_Repeat 97563 97685 176 + . . scaffold563 GLEAN promoter 101730 102729 0.873204 + . ID=CGI_10019821; scaffold563 GLEAN mRNA 102730 109015 0.873204 + . ID=CGI_10019821; scaffold563 GLEAN mRNA 112960 147299 0.761235 - . ID=CGI_10019822; scaffold563 GLEAN promoter 147300 148299 0.761235 - . ID=CGI_10019822; scaffold563 TRF Tandem_Repeat 180683 180713 53 + . . scaffold563 GLEAN promoter 188290 189289 0.548684 + . ID=CGI_10019823; scaffold563 GLEAN mRNA 189290 195396 0.548684 + . ID=CGI_10019823; scaffold563 TRF Tandem_Repeat 194947 194987 82 + . . scaffold563 TRF Tandem_Repeat 203350 203406 105 + . . scaffold563 TRF Tandem_Repeat 205169 205206 67 + . . scaffold563 TRF Tandem_Repeat 209169 209228 93 + . . scaffold563 GLEAN promoter 214550 215549 1 + . ID=CGI_10019824; scaffold563 GLEAN mRNA 215550 215792 1 + . ID=CGI_10019824; scaffold563 TRF Tandem_Repeat 215999 216035 74 + . . scaffold563 TRF Tandem_Repeat 220782 220829 96 + . . scaffold563 GLEAN mRNA 221021 229296 0.703326 - . ID=CGI_10019825; scaffold563 GLEAN promoter 223652 224651 1 + . ID=CGI_10019826; scaffold563 WUBlastX LINE_Penelope 224070 224426 49 - . . scaffold563 GLEAN mRNA 224652 228103 1 + . ID=CGI_10019826; scaffold563 GLEAN promoter 229297 230296 0.703326 - . ID=CGI_10019825; scaffold563 TRF Tandem_Repeat 230795 230842 96 + . . scaffold563 WUBlastX LINE_RTE-X 233638 234132 137 + . . scaffold563 WUBlastX LINE_RTE-X 233638 234474 86 + . . scaffold563 WUBlastX LINE_RTE-X 234276 234623 80 + . . scaffold563 TRF Tandem_Repeat 237432 237469 76 + . . scaffold563 GLEAN mRNA 237679 252456 0.920527 - . ID=CGI_10019827; scaffold563 TRF Tandem_Repeat 242363 242403 55 + . . scaffold563 GLEAN promoter 252457 253456 0.920527 - . ID=CGI_10019827; scaffold563 GLEAN promoter 252644 253643 0.999676 + . ID=CGI_10019828; scaffold563 GLEAN mRNA 253644 258006 0.999676 + . ID=CGI_10019828; scaffold563 GLEAN mRNA 260922 262018 0.734569 - . ID=CGI_10019829; scaffold563 GLEAN promoter 262019 263018 0.734569 - . ID=CGI_10019829; scaffold563 WUBlastX LINE_CR1 262477 263007 336 - . . scaffold563 WUBlastX LINE_CR1 262967 263656 113 - . . scaffold563 WUBlastX LINE_CR1 263015 263476 383 - . . scaffold563 WUBlastX LINE_L2 263027 263785 98 - . . scaffold563 GLEAN mRNA 265850 265999 0.5 - . ID=CGI_10019830; scaffold563 GLEAN promoter 266000 266999 0.5 - . ID=CGI_10019830; scaffold563 WUBlastX LINE_RTE-X 267295 267333 30 - . . scaffold563 WUBlastX LINE_RTE-X 267942 268175 47 - . . scaffold563 WUBlastX LINE_RTE-X 267954 268070 62 - . . scaffold563 GLEAN promoter 269276 270275 0.999351 + . ID=CGI_10019831; scaffold563 WUBlastX LINE_L2 269286 269720 38 - . . scaffold563 WUBlastX LINE_CR1 269292 269636 78 - . . scaffold563 WUBlastX LINE_CR1 269301 269588 158 - . . scaffold563 GLEAN mRNA 270276 278078 0.999351 + . ID=CGI_10019831; scaffold563 TRF Tandem_Repeat 284743 284795 106 + . . scaffold563 TRF Tandem_Repeat 289629 289665 74 + . . scaffold563 GLEAN promoter 310602 311601 0.790146 + . ID=CGI_10019832; scaffold563 GLEAN mRNA 311602 335906 0.790146 + . ID=CGI_10019832; scaffold563 TRF Tandem_Repeat 321914 322511 606 + . . scaffold563 TRF Tandem_Repeat 325598 325683 172 + . . scaffold563 TRF Tandem_Repeat 327840 327891 88 + . . scaffold563 TRF Tandem_Repeat 330936 331160 294 + . . scaffold563 GLEAN mRNA 339716 340483 1 - . ID=CGI_10019833; scaffold563 GLEAN promoter 340484 341483 1 - . ID=CGI_10019833; scaffold563 GLEAN mRNA 342139 342775 0.999994 - . ID=CGI_10019834; scaffold563 GLEAN promoter 342776 343775 0.999994 - . ID=CGI_10019834; scaffold563 GLEAN mRNA 345532 351192 0.991197 - . ID=CGI_10019835; scaffold563 GLEAN promoter 351193 352192 0.991197 - . ID=CGI_10019835; scaffold563 TRF Tandem_Repeat 359956 359980 50 + . . scaffold563 TRF Tandem_Repeat 360092 360121 51 + . . scaffold563 TRF Tandem_Repeat 361212 361456 124 + . . scaffold563 TRF Tandem_Repeat 361263 361506 194 + . . scaffold563 TRF Tandem_Repeat 361621 361696 61 + . . scaffold563 TRF Tandem_Repeat 362525 362730 50 + . . scaffold563 GLEAN promoter 363260 364259 1 + . ID=CGI_10019836; scaffold563 GLEAN mRNA 364260 367200 1 + . ID=CGI_10019836; scaffold563 GLEAN mRNA 371737 379906 0.613364 - . ID=CGI_10019837; scaffold563 WUBlastX LINE_RTE-X 378060 378296 59 + . . scaffold563 GLEAN promoter 379907 380906 0.613364 - . ID=CGI_10019837; scaffold563 TRF Tandem_Repeat 381147 381189 86 + . . scaffold563 GLEAN promoter 381828 382827 0.990769 + . ID=CGI_10019838; scaffold563 GLEAN mRNA 382828 394300 0.990769 + . ID=CGI_10019838; scaffold563 TRF Tandem_Repeat 384717 384769 106 + . . scaffold563 GLEAN mRNA 397877 400297 1 - . ID=CGI_10019839; scaffold563 GLEAN promoter 400298 401297 1 - . ID=CGI_10019839; scaffold563 GLEAN mRNA 401332 420584 0.813574 - . ID=CGI_10019840; scaffold563 TRF Tandem_Repeat 407323 407375 97 + . . scaffold563 TRF Tandem_Repeat 409860 409945 172 + . . scaffold563 TRF Tandem_Repeat 414878 414970 96 + . . scaffold563 TRF Tandem_Repeat 414888 414978 110 + . . scaffold563 TRF Tandem_Repeat 417454 417505 104 + . . scaffold563 TRF Tandem_Repeat 418741 419092 275 + . . scaffold563 TRF Tandem_Repeat 418742 419092 195 + . . scaffold563 TRF Tandem_Repeat 418742 419131 182 + . . scaffold563 TRF Tandem_Repeat 418955 419131 137 + . . scaffold563 GLEAN promoter 420585 421584 0.813574 - . ID=CGI_10019840; scaffold563 GLEAN mRNA 420975 421238 0.618241 - . ID=CGI_10019841; scaffold563 GLEAN promoter 421239 422238 0.618241 - . ID=CGI_10019841; scaffold563 GLEAN promoter 422799 423798 0.999394 + . ID=CGI_10019842; scaffold563 TRF Tandem_Repeat 423642 423797 285 + . . scaffold563 GLEAN mRNA 423799 439328 0.999394 + . ID=CGI_10019842; scaffold563 TRF Tandem_Repeat 424279 424320 84 + . . scaffold563 TRF Tandem_Repeat 429336 429572 402 + . . scaffold563 TRF Tandem_Repeat 429760 429935 262 + . . scaffold563 TRF Tandem_Repeat 441171 441216 92 + . . scaffold563 TRF Tandem_Repeat 445066 445136 128 + . . scaffold563 TRF Tandem_Repeat 448401 448499 155 + . . scaffold563 WUBlastX DNA_IS 455640 456857 2000 + . . scaffold563 TRF Tandem_Repeat 465932 465982 102 + . . scaffold563 GLEAN promoter 468996 469995 0.653133 + . ID=CGI_10019843; scaffold563 GLEAN mRNA 469996 513756 0.653133 + . ID=CGI_10019843; scaffold563 TRF Tandem_Repeat 470136 470267 180 + . . scaffold563 TRF Tandem_Repeat 473624 473663 62 + . . scaffold563 TRF Tandem_Repeat 495030 495066 74 + . . scaffold563 TRF Tandem_Repeat 498879 499651 1021 + . . scaffold563 WUBlastX DNA_TcMar-Marin 505524 505829 65 - . . scaffold563 WUBlastX DNA_TcMar-Marin 505578 505799 87 - . . scaffold563 TRF Tandem_Repeat 506183 506280 135 + . . scaffold563 TRF Tandem_Repeat 508533 508635 145 + . . scaffold563 WUBlastX LINE_L1 509094 509255 32 + . . scaffold563 WUBlastX LINE_L1-Tx1 509282 511066 408 + . . scaffold563 WUBlastX LINE_L1 509282 510442 436 + . . scaffold563 WUBlastX LINE_L1 511110 511463 29 + . . scaffold563 WUBlastX LINE_L1-Tx1 511248 511478 38 + . . scaffold563 WUBlastX DNA_Crypton 523839 524261 57 - . . scaffold563 GLEAN promoter 535560 536559 0.797724 + . ID=CGI_10019844; scaffold563 GLEAN mRNA 536560 541987 0.797724 + . ID=CGI_10019844; scaffold563 GLEAN promoter 541480 542479 0.135238 + . ID=CGI_10019846; scaffold563 GLEAN mRNA 541984 542307 0.999955 - . ID=CGI_10019845; scaffold563 WUBlastX LTR_Gypsy 542209 542634 54 - . . scaffold563 GLEAN promoter 542308 543307 0.999955 - . ID=CGI_10019845; scaffold563 GLEAN mRNA 542480 589820 0.135238 + . ID=CGI_10019846; scaffold563 WUBlastX LINE_R2-Hero 558410 558874 337 - . . scaffold563 WUBlastX LINE_R2-Hero 558888 559034 45 - . . scaffold563 TRF Tandem_Repeat 565716 565893 83 + . . scaffold563 TRF Tandem_Repeat 566414 566649 363 + . . scaffold563 TRF Tandem_Repeat 566477 566605 75 + . . scaffold563 TRF Tandem_Repeat 578202 578899 988 + . . scaffold563 TRF Tandem_Repeat 582943 583100 298 + . . scaffold563 TRF Tandem_Repeat 587399 587447 62 + . . scaffold563 GLEAN mRNA 594924 599910 1 - . ID=CGI_10019847; scaffold563 TRF Tandem_Repeat 595847 596133 412 + . . scaffold563 GLEAN promoter 599911 600910 1 - . ID=CGI_10019847; scaffold563 GLEAN promoter 601277 602276 0.999676 + . ID=CGI_10019848; scaffold563 WUBlastX LINE_RTE-X 601798 602136 48 - . . scaffold563 WUBlastX LINE_RTE-X 601852 602136 52 - . . scaffold563 WUBlastX LINE_RTE-X 601939 602154 67 - . . scaffold563 WUBlastX LINE_RTE-X 601942 602121 73 - . . scaffold563 GLEAN mRNA 602277 606044 0.999676 + . ID=CGI_10019848; scaffold563 TRF Tandem_Repeat 611160 611256 76 + . . scaffold564 TRF Tandem_Repeat 622 1131 249 + . . scaffold564 TRF Tandem_Repeat 979 1131 252 + . . scaffold564 TRF Tandem_Repeat 1732 1877 184 + . . scaffold564 TRF Tandem_Repeat 3512 3620 132 + . . scaffold564 TRF Tandem_Repeat 6612 6682 142 + . . scaffold564 WUBlastX LINE_L1-Tx1 9331 9726 73 + . . scaffold564 WUBlastX LINE_L1-Tx1 9439 9807 89 + . . scaffold564 WUBlastX LINE_L1-Tx1 9816 9986 47 + . . scaffold564 GLEAN promoter 19161 20160 0.370479 + . ID=CGI_10016124; scaffold564 GLEAN mRNA 20161 24895 0.370479 + . ID=CGI_10016124; scaffold564 GLEAN promoter 24453 25452 0.989628 + . ID=CGI_10016125; scaffold564 TRF Tandem_Repeat 25033 25151 202 + . . scaffold564 GLEAN mRNA 25453 33550 0.989628 + . ID=CGI_10016125; scaffold564 GLEAN mRNA 36966 40996 0.99941 - . ID=CGI_10016126; scaffold564 GLEAN promoter 40997 41996 0.99941 - . ID=CGI_10016126; scaffold564 TRF Tandem_Repeat 41439 41484 85 + . . scaffold564 TRF Tandem_Repeat 42232 42300 138 + . . scaffold564 TRF Tandem_Repeat 43235 43307 146 + . . scaffold564 TRF Tandem_Repeat 48251 48291 73 + . . scaffold564 TRF Tandem_Repeat 53602 53829 397 + . . scaffold564 TRF Tandem_Repeat 62369 62416 60 + . . scaffold564 TRF Tandem_Repeat 65578 65607 51 + . . scaffold564 TRF Tandem_Repeat 66049 66389 529 + . . scaffold564 TRF Tandem_Repeat 75987 76024 76 + . . scaffold564 TRF Tandem_Repeat 76111 76146 63 + . . scaffold564 TRF Tandem_Repeat 78418 78442 50 + . . scaffold564 TRF Tandem_Repeat 78960 78985 52 + . . scaffold564 GLEAN promoter 79413 80412 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 79980 80037 116 + . . scaffold564 GLEAN mRNA 80413 104128 0.622128 + . ID=CGI_10016127; scaffold564 TRF Tandem_Repeat 83811 83848 58 + . . scaffold564 TRF Tandem_Repeat 85555 85650 174 + . . scaffold564 TRF Tandem_Repeat 86370 86438 93 + . . scaffold564 TRF Tandem_Repeat 86379 86438 84 + . . scaffold564 TRF Tandem_Repeat 87506 87537 64 + . . scaffold564 TRF Tandem_Repeat 93219 93277 118 + . . scaffold564 TRF Tandem_Repeat 94261 94524 433 + . . scaffold564 TRF Tandem_Repeat 96419 96730 256 + . . scaffold564 TRF Tandem_Repeat 96513 96799 288 + . . scaffold564 TRF Tandem_Repeat 103855 103900 92 + . . scaffold564 TRF Tandem_Repeat 103923 104046 59 + . . scaffold564 GLEAN promoter 105908 106907 0.999949 + . ID=CGI_10016128; scaffold564 TRF Tandem_Repeat 106511 106651 266 + . . scaffold564 GLEAN mRNA 106908 111246 0.999949 + . ID=CGI_10016128; scaffold564 TRF Tandem_Repeat 109921 110124 236 + . . scaffold564 TRF Tandem_Repeat 110357 110496 113 + . . scaffold564 TRF Tandem_Repeat 112343 112394 104 + . . scaffold564 TRF Tandem_Repeat 114451 114691 302 + . . scaffold564 TRF Tandem_Repeat 126360 126428 93 + . . scaffold564 TRF Tandem_Repeat 126382 126431 91 + . . scaffold564 WUBlastX LINE_RTE-X 138310 138522 35 + . . scaffold564 TRF Tandem_Repeat 155252 155342 182 + . . scaffold564 TRF Tandem_Repeat 157067 157099 66 + . . scaffold564 GLEAN promoter 159627 160626 0.499298 + . ID=CGI_10016129; scaffold564 GLEAN mRNA 160627 178597 0.499298 + . ID=CGI_10016129; scaffold564 GLEAN mRNA 183112 186412 1 - . ID=CGI_10016130; scaffold564 GLEAN promoter 186413 187412 1 - . ID=CGI_10016130; scaffold564 TRF Tandem_Repeat 190162 190211 100 + . . scaffold564 WUBlastX LTR_Gypsy 193060 193215 131 + . . scaffold564 WUBlastX LTR_Gypsy 193378 193827 184 + . . scaffold564 GLEAN mRNA 200722 202995 0.733749 - . ID=CGI_10016131; scaffold564 GLEAN promoter 202996 203995 0.733749 - . ID=CGI_10016131; scaffold564 TRF Tandem_Repeat 203398 203487 164 + . . scaffold564 GLEAN mRNA 204324 206847 0.998456 - . ID=CGI_10016132; scaffold564 GLEAN promoter 206848 207847 0.998456 - . ID=CGI_10016132; scaffold564 TRF Tandem_Repeat 207089 207163 132 + . . scaffold564 TRF Tandem_Repeat 208185 208228 88 + . . scaffold564 GLEAN mRNA 213759 220133 0.999676 - . ID=CGI_10016133; scaffold564 GLEAN promoter 220134 221133 0.999676 - . ID=CGI_10016133; scaffold564 TRF Tandem_Repeat 223194 223260 71 + . . scaffold564 WUBlastX LINE_CR1-L2 223261 223413 40 + . . scaffold564 WUBlastX LINE_CR1-L2 223285 223434 65 + . . scaffold564 WUBlastX LINE_CR1-L2 223416 223799 193 + . . scaffold564 WUBlastX LINE_CR1-L2 223419 223871 187 + . . scaffold564 WUBlastX LINE_CR1 223831 223920 23 + . . scaffold564 WUBlastX LINE_CR1-L2 223886 224341 247 + . . scaffold564 WUBlastX LINE_L2 224355 224693 79 + . . scaffold564 WUBlastX LINE_CR1-L2 224355 224759 52 + . . scaffold564 TRF Tandem_Repeat 225578 225612 70 + . . scaffold564 TRF Tandem_Repeat 233375 234131 793 + . . scaffold564 GLEAN promoter 234771 235770 0.129771 + . ID=CGI_10016134; scaffold564 GLEAN mRNA 235771 241332 0.129771 + . ID=CGI_10016134; scaffold564 GLEAN promoter 242185 243184 0.999846 + . ID=CGI_10016135; scaffold564 GLEAN mRNA 243185 245877 0.999846 + . ID=CGI_10016135; scaffold564 TRF Tandem_Repeat 244342 244391 100 + . . scaffold564 TRF Tandem_Repeat 245299 245340 84 + . . scaffold564 GLEAN promoter 248663 249662 0.99862 + . ID=CGI_10016136; scaffold564 GLEAN mRNA 249663 250622 0.99862 + . ID=CGI_10016136; scaffold564 GLEAN promoter 250157 251156 1 + . ID=CGI_10016137; scaffold564 GLEAN mRNA 251157 252080 1 + . ID=CGI_10016137; scaffold564 WUBlastX LINE_RTE-X 254036 254290 72 + . . scaffold564 WUBlastX LINE_RTE-X 254069 254257 75 + . . scaffold564 WUBlastX LINE_RTE-X 254093 254239 80 + . . scaffold564 TRF Tandem_Repeat 254828 254852 50 + . . scaffold564 GLEAN promoter 259161 260160 0.224773 + . ID=CGI_10016138; scaffold564 GLEAN mRNA 260161 286929 0.224773 + . ID=CGI_10016138; scaffold564 GLEAN mRNA 262607 270549 0.482674 - . ID=CGI_10016139; scaffold564 TRF Tandem_Repeat 264932 264968 56 + . . scaffold564 GLEAN promoter 270550 271549 0.482674 - . ID=CGI_10016139; scaffold564 TRF Tandem_Repeat 280910 281305 464 + . . scaffold564 GLEAN mRNA 287542 295835 0.999676 - . ID=CGI_10016140; scaffold564 TRF Tandem_Repeat 288081 288166 100 + . . scaffold564 GLEAN promoter 295242 296241 0.484577 + . ID=CGI_10016141; scaffold564 GLEAN promoter 295836 296835 0.999676 - . ID=CGI_10016140; scaffold564 GLEAN mRNA 296242 301781 0.484577 + . ID=CGI_10016141; scaffold564 TRF Tandem_Repeat 297891 297936 92 + . . scaffold564 GLEAN mRNA 302700 307388 0.648556 - . ID=CGI_10016142; scaffold564 GLEAN promoter 307389 308388 0.648556 - . ID=CGI_10016142; scaffold564 GLEAN promoter 310235 311234 0.999949 + . ID=CGI_10016143; scaffold564 GLEAN mRNA 311235 315557 0.999949 + . ID=CGI_10016143; scaffold564 GLEAN mRNA 316664 328918 0.99869 - . ID=CGI_10016144; scaffold564 GLEAN promoter 318381 319380 0.998744 + . ID=CGI_10016145; scaffold564 GLEAN mRNA 319381 330797 0.998744 + . ID=CGI_10016145; scaffold564 GLEAN promoter 328919 329918 0.99869 - . ID=CGI_10016144; scaffold564 GLEAN mRNA 334985 351840 1 - . ID=CGI_10016146; scaffold564 TRF Tandem_Repeat 336524 337070 532 + . . scaffold564 TRF Tandem_Repeat 336591 337070 521 + . . scaffold564 TRF Tandem_Repeat 337217 337790 815 + . . scaffold564 TRF Tandem_Repeat 337220 337790 831 + . . scaffold564 TRF Tandem_Repeat 349550 349647 142 + . . scaffold564 GLEAN promoter 351841 352840 1 - . ID=CGI_10016146; scaffold564 TRF Tandem_Repeat 353387 353742 495 + . . scaffold564 GLEAN promoter 363800 364799 0.572149 + . ID=CGI_10016147; scaffold564 GLEAN mRNA 364800 370346 0.572149 + . ID=CGI_10016147; scaffold564 TRF Tandem_Repeat 365119 365920 845 + . . scaffold564 TRF Tandem_Repeat 365127 365920 874 + . . scaffold564 TRF Tandem_Repeat 366272 367239 1164 + . . scaffold564 GLEAN promoter 372630 373629 0.899409 + . ID=CGI_10016148; scaffold564 WUBlastX DNA_TcMar-Marin 372659 372775 26 + . . scaffold564 WUBlastX DNA_TcMar-Marin 372742 373041 41 + . . scaffold564 WUBlastX DNA_TcMar-Marin 372793 373068 51 + . . scaffold564 WUBlastX DNA_TcMar-Marin 373281 373352 20 + . . scaffold564 WUBlastX DNA_TcMar-Marin 373337 373411 27 + . . scaffold564 WUBlastX DNA_TcMar-Marin 373456 373560 24 + . . scaffold564 GLEAN mRNA 373630 381018 0.899409 + . ID=CGI_10016148; scaffold564 TRF Tandem_Repeat 399552 399593 68 + . . scaffold564 TRF Tandem_Repeat 407247 407350 190 + . . scaffold564 GLEAN mRNA 408896 441920 0.589775 - . ID=CGI_10016149; scaffold564 TRF Tandem_Repeat 421542 421586 90 + . . scaffold564 TRF Tandem_Repeat 421806 421835 51 + . . scaffold564 TRF Tandem_Repeat 433266 433350 129 + . . scaffold564 TRF Tandem_Repeat 434818 434939 226 + . . scaffold564 TRF Tandem_Repeat 438585 438631 67 + . . scaffold564 GLEAN promoter 441921 442920 0.589775 - . ID=CGI_10016149; scaffold564 TRF Tandem_Repeat 447348 447646 200 + . . scaffold564 TRF Tandem_Repeat 449051 449090 62 + . . scaffold565 WUBlastX LTR_Ngaro 837 1235 158 + . . scaffold565 WUBlastX LTR_Ngaro 936 1223 183 + . . scaffold565 TRF Tandem_Repeat 9432 9458 54 + . . scaffold565 TRF Tandem_Repeat 12787 12831 90 + . . scaffold565 TRF Tandem_Repeat 15899 15979 108 + . . scaffold565 GLEAN mRNA 33202 33867 1 - . ID=CGI_10002821; scaffold565 GLEAN promoter 33868 34867 1 - . ID=CGI_10002821; scaffold565 TRF Tandem_Repeat 35905 35952 96 + . . scaffold565 GLEAN promoter 38196 39195 0.999973 + . ID=CGI_10002822; scaffold565 GLEAN mRNA 39196 39877 0.999973 + . ID=CGI_10002822; scaffold565 TRF Tandem_Repeat 42765 42818 108 + . . scaffold565 TRF Tandem_Repeat 42879 42911 57 + . . scaffold565 TRF Tandem_Repeat 44747 44818 144 + . . scaffold565 TRF Tandem_Repeat 46391 46454 56 + . . scaffold565 TRF Tandem_Repeat 46392 46467 89 + . . scaffold565 TRF Tandem_Repeat 46404 46466 63 + . . scaffold565 WUBlastX LINE_RTE-X 50509 50604 34 + . . scaffold565 WUBlastX LINE_RTE-X 50679 50750 23 + . . scaffold565 WUBlastX LINE_RTE-X 52651 52737 38 + . . scaffold565 WUBlastX LINE_RTE-X 52733 52837 34 + . . scaffold565 WUBlastX LINE_RTE-X 54199 54513 52 - . . scaffold568 GLEAN promoter 4820 5819 0.813857 + . ID=CGI_10012160; scaffold568 GLEAN mRNA 5820 12375 0.813857 + . ID=CGI_10012160; scaffold568 GLEAN mRNA 5835 10505 1 - . ID=CGI_10012161; scaffold568 GLEAN promoter 10506 11505 1 - . ID=CGI_10012161; scaffold568 TRF Tandem_Repeat 16353 16398 92 + . . scaffold568 GLEAN mRNA 27147 27332 0.618241 - . ID=CGI_10012162; scaffold568 GLEAN promoter 27333 28332 0.618241 - . ID=CGI_10012162; scaffold568 TRF Tandem_Repeat 37926 38034 113 + . . scaffold568 TRF Tandem_Repeat 37926 38034 113 + . . scaffold568 TRF Tandem_Repeat 58479 58567 81 + . . scaffold568 TRF Tandem_Repeat 58495 58565 83 + . . scaffold568 TRF Tandem_Repeat 58601 58668 63 + . . scaffold568 TRF Tandem_Repeat 65524 65588 60 + . . scaffold568 TRF Tandem_Repeat 66303 66350 69 + . . scaffold568 TRF Tandem_Repeat 68048 68114 71 + . . scaffold568 WUBlastX LINE_Penelope 69546 69809 49 + . . scaffold568 WUBlastX LINE_Penelope 69854 70321 62 + . . scaffold568 WUBlastX LINE_Penelope 69866 70171 129 + . . scaffold568 WUBlastX LINE_Penelope 69884 70141 134 + . . scaffold568 WUBlastX LINE_Penelope 70688 70891 28 + . . scaffold568 GLEAN mRNA 84587 85258 0.776794 - . ID=CGI_10012163; scaffold568 GLEAN promoter 85259 86258 0.776794 - . ID=CGI_10012163; scaffold568 TRF Tandem_Repeat 85698 85739 50 + . . scaffold568 TRF Tandem_Repeat 88391 88552 175 + . . scaffold568 WUBlastX DNA_TcMar-Marin 115327 115788 184 - . . scaffold568 WUBlastX DNA_TcMar-Marin 115327 115707 229 - . . scaffold568 WUBlastX DNA_TcMar-Marin 115924 116268 184 - . . scaffold568 WUBlastX DNA_TcMar-Marin 116270 116632 86 - . . scaffold568 WUBlastX DNA_TcMar-Marin 116291 116584 100 - . . scaffold568 TRF Tandem_Repeat 118550 118576 54 + . . scaffold568 WUBlastX LINE_RTE-BovB 118611 120530 911 - . . scaffold568 WUBlastX LINE_RTE-BovB 118626 121103 400 - . . scaffold568 WUBlastX LINE_RTE-BovB 120586 121431 163 - . . scaffold568 TRF Tandem_Repeat 123180 123288 112 + . . scaffold568 TRF Tandem_Repeat 128826 128892 62 + . . scaffold568 TRF Tandem_Repeat 129410 129457 96 + . . scaffold568 TRF Tandem_Repeat 131887 131953 71 + . . scaffold568 TRF Tandem_Repeat 145424 145482 118 + . . scaffold568 TRF Tandem_Repeat 145941 145984 61 + . . scaffold568 TRF Tandem_Repeat 146141 147297 953 + . . scaffold568 TRF Tandem_Repeat 146195 147131 744 + . . scaffold568 TRF Tandem_Repeat 151973 152028 67 + . . scaffold568 TRF Tandem_Repeat 151974 152041 91 + . . scaffold568 TRF Tandem_Repeat 151974 152041 82 + . . scaffold568 WUBlastX DNA_IS4EU 152737 153039 130 + . . scaffold568 WUBlastX DNA_Kolobok-IS4 152767 153102 102 + . . scaffold568 WUBlastX DNA_Kolobok-IS4 152779 153183 56 + . . scaffold568 WUBlastX DNA_IS4EU 153505 153831 159 - . . scaffold568 WUBlastX DNA_IS4EU 153831 154151 99 - . . scaffold568 TRF Tandem_Repeat 159467 159546 128 + . . scaffold568 TRF Tandem_Repeat 164996 165030 70 + . . scaffold568 TRF Tandem_Repeat 167882 167924 77 + . . scaffold568 WUBlastX LTR_Gypsy-Troyk 185574 185906 115 - . . scaffold568 WUBlastX LTR_Gypsy-Troyk 185801 186283 180 - . . scaffold568 WUBlastX LTR_Gypsy-Troyk 186244 186429 99 - . . scaffold568 TRF Tandem_Repeat 199920 199968 98 + . . scaffold568 WUBlastX DNA_TcMar-Pogo 208873 209862 207 - . . scaffold568 WUBlastX DNA_TcMar-Pogo 209778 210257 210 - . . scaffold568 WUBlastX DNA_TcMar-Tigge 209793 210350 158 - . . scaffold568 WUBlastX DNA_TcMar-Tigge 210232 210393 39 - . . scaffold568 TRF Tandem_Repeat 214306 214348 86 + . . scaffold568 WUBlastX LINE_L2 216259 216363 26 + . . scaffold568 WUBlastX LINE_RTE-X 217204 217428 87 + . . scaffold568 WUBlastX LINE_RTE-X 217261 217428 96 + . . scaffold568 WUBlastX LINE_RTE-X 217431 217862 126 + . . scaffold568 WUBlastX LINE_RTE-X 217861 218055 30 + . . scaffold568 WUBlastX LINE_Proto2 217894 218028 39 + . . scaffold568 WUBlastX LINE_RTE-X 218003 218437 64 + . . scaffold568 WUBlastX LINE_RTE-X 218081 218431 121 + . . scaffold568 WUBlastX LINE_RTE-X 218726 218980 67 + . . scaffold568 TRF Tandem_Repeat 222912 222958 94 + . . scaffold568 GLEAN mRNA 252907 275607 0.34541 - . ID=CGI_10012164; scaffold568 TRF Tandem_Repeat 253407 253440 68 + . . scaffold568 TRF Tandem_Repeat 254994 255039 83 + . . scaffold568 TRF Tandem_Repeat 274862 274902 82 + . . scaffold568 TRF Tandem_Repeat 275307 275356 100 + . . scaffold568 GLEAN promoter 275608 276607 0.34541 - . ID=CGI_10012164; scaffold568 TRF Tandem_Repeat 280038 280067 51 + . . scaffold568 TRF Tandem_Repeat 280456 280526 99 + . . scaffold568 WUBlastX LINE_L1 291428 291907 271 + . . scaffold568 WUBlastX LINE_L1-Tx1 291428 292177 259 + . . scaffold568 WUBlastX LINE_L1-Tx1 292224 292751 72 + . . scaffold568 WUBlastX LINE_L1-Tx1 292739 293344 204 + . . scaffold568 WUBlastX LINE_L1-Tx1 293301 293471 35 + . . scaffold568 WUBlastX LINE_L1-Tx1 293488 293982 330 + . . scaffold568 WUBlastX LINE_L1-Tx1 293972 294370 193 + . . scaffold568 WUBlastX LINE_L1 293972 294526 94 + . . scaffold568 WUBlastX LINE_CR1 295158 295250 21 + . . scaffold568 WUBlastX LINE_L1 295298 295639 195 + . . scaffold568 WUBlastX LINE_L1-Tx1 295358 295636 287 + . . scaffold568 WUBlastX LINE_L1-Tx1 295630 296472 38 + . . scaffold568 WUBlastX LINE_L1-Tx1 295633 296322 211 + . . scaffold568 WUBlastX LINE_L1-Tx1 296959 297255 30 + . . scaffold568 WUBlastX LINE_L1-Tx1 296959 297198 61 + . . scaffold568 WUBlastX LINE_RTE-X 309595 309834 32 - . . scaffold568 WUBlastX LINE_RTE-X 309697 309840 66 - . . scaffold568 WUBlastX LTR_Gypsy 310349 310873 115 - . . scaffold568 WUBlastX LTR_Gypsy 310499 310873 142 - . . scaffold568 WUBlastX LTR_Gypsy 310873 312042 893 - . . scaffold569 GLEAN mRNA 180 24552 0.405853 - . ID=CGI_10009492; scaffold569 TRF Tandem_Repeat 2051 2092 57 + . . scaffold569 TRF Tandem_Repeat 4606 4657 68 + . . scaffold569 GLEAN promoter 4686 5685 1 + . ID=CGI_10009493; scaffold569 GLEAN mRNA 5686 11825 1 + . ID=CGI_10009493; scaffold569 GLEAN promoter 24553 25552 0.405853 - . ID=CGI_10009492; scaffold569 TRF Tandem_Repeat 27618 27801 332 + . . scaffold569 GLEAN promoter 31554 32553 0.974978 + . ID=CGI_10009494; scaffold569 TRF Tandem_Repeat 31779 31855 136 + . . scaffold569 TRF Tandem_Repeat 32148 32176 58 + . . scaffold569 TRF Tandem_Repeat 32260 32310 75 + . . scaffold569 GLEAN mRNA 32554 62247 0.974978 + . ID=CGI_10009494; scaffold569 WUBlastX LINE_CR1 33436 33651 76 + . . scaffold569 TRF Tandem_Repeat 35491 35543 106 + . . scaffold569 WUBlastX LTR_DIRS 40743 41144 99 + . . scaffold569 WUBlastX LTR_DIRS 40824 41111 107 + . . scaffold569 WUBlastX LTR_DIRS 40848 41591 99 + . . scaffold569 WUBlastX LTR_DIRS 41549 42334 205 + . . scaffold569 WUBlastX LTR_DIRS 42271 42369 24 + . . scaffold569 WUBlastX LTR_DIRS 43068 43364 49 + . . scaffold569 WUBlastX LTR_DIRS 43269 43505 50 + . . scaffold569 WUBlastX LTR_DIRS 43353 43535 46 + . . scaffold569 TRF Tandem_Repeat 56138 56193 89 + . . scaffold569 TRF Tandem_Repeat 59951 59990 62 + . . scaffold569 TRF Tandem_Repeat 63923 63977 110 + . . scaffold569 TRF Tandem_Repeat 67913 67975 72 + . . scaffold569 TRF Tandem_Repeat 67918 67979 61 + . . scaffold569 TRF Tandem_Repeat 67924 67975 68 + . . scaffold569 TRF Tandem_Repeat 69874 69930 114 + . . scaffold569 GLEAN mRNA 88507 89757 0.999998 - . ID=CGI_10009495; scaffold569 GLEAN promoter 89758 90757 0.999998 - . ID=CGI_10009495; scaffold569 TRF Tandem_Repeat 90091 90183 55 + . . scaffold569 TRF Tandem_Repeat 90103 90184 69 + . . scaffold569 TRF Tandem_Repeat 90109 90184 56 + . . scaffold569 GLEAN mRNA 93334 114910 0.803638 - . ID=CGI_10009496; scaffold569 TRF Tandem_Repeat 102862 103681 1081 + . . scaffold569 TRF Tandem_Repeat 103901 103941 82 + . . scaffold569 TRF Tandem_Repeat 105220 105354 173 + . . scaffold569 TRF Tandem_Repeat 107069 107277 118 + . . scaffold569 TRF Tandem_Repeat 108916 109278 367 + . . scaffold569 TRF Tandem_Repeat 109070 109278 259 + . . scaffold569 TRF Tandem_Repeat 110463 111370 1378 + . . scaffold569 TRF Tandem_Repeat 111851 111899 89 + . . scaffold569 WUBlastX LINE_RTE-X 113299 113475 54 + . . scaffold569 GLEAN promoter 114911 115910 0.803638 - . ID=CGI_10009496; scaffold569 GLEAN mRNA 118101 122403 0.520571 - . ID=CGI_10009497; scaffold569 TRF Tandem_Repeat 118607 118673 80 + . . scaffold569 TRF Tandem_Repeat 120353 120507 143 + . . scaffold569 TRF Tandem_Repeat 120371 120512 180 + . . scaffold569 GLEAN promoter 122404 123403 0.520571 - . ID=CGI_10009497; scaffold569 TRF Tandem_Repeat 123462 123977 712 + . . scaffold569 TRF Tandem_Repeat 127388 127801 677 + . . scaffold569 GLEAN promoter 132999 133998 0.674144 + . ID=CGI_10009498; scaffold569 GLEAN mRNA 133999 168874 0.674144 + . ID=CGI_10009498; scaffold569 TRF Tandem_Repeat 150994 151023 51 + . . scaffold569 TRF Tandem_Repeat 150994 151043 66 + . . scaffold569 WUBlastX LINE_L2 152800 153687 442 - . . scaffold569 WUBlastX LINE_L2 153163 153825 149 - . . scaffold569 WUBlastX LINE_Jockey 153406 153948 134 - . . scaffold569 TRF Tandem_Repeat 157381 157414 68 + . . scaffold569 WUBlastX LINE_L1-Tx1 162648 163427 173 - . . scaffold569 WUBlastX LINE_L1-Tx1 163457 163630 87 - . . scaffold569 WUBlastX LINE_L1-Tx1 163496 163693 34 - . . scaffold569 GLEAN mRNA 163982 164338 0.99998 - . ID=CGI_10009499; scaffold569 GLEAN promoter 164339 165338 0.99998 - . ID=CGI_10009499; scaffold569 GLEAN mRNA 168577 170058 1 - . ID=CGI_10009500; scaffold569 GLEAN promoter 170059 171058 1 - . ID=CGI_10009500; scaffold569 TRF Tandem_Repeat 171433 171573 61 + . . scaffold569 TRF Tandem_Repeat 172587 173353 928 + . . scaffold569 WUBlastX DNA_TcMar-Marin 173681 173893 73 + . . scaffold569 GLEAN mRNA 175420 185854 0.966732 - . ID=CGI_10009501; scaffold569 TRF Tandem_Repeat 180547 180580 59 + . . scaffold569 TRF Tandem_Repeat 184175 184283 79 + . . scaffold569 GLEAN promoter 185855 186854 0.966732 - . ID=CGI_10009501; scaffold569 TRF Tandem_Repeat 194075 194132 116 + . . scaffold569 WUBlastX DNA_Maverick 197938 198342 258 + . . scaffold569 WUBlastX DNA_Maverick 198601 200091 665 + . . scaffold569 WUBlastX DNA_Maverick 200088 200363 130 + . . scaffold569 WUBlastX DNA_Maverick 200336 201193 728 + . . scaffold569 WUBlastX DNA_Maverick 201152 201205 28 + . . scaffold569 WUBlastX DNA_Maverick 201207 201851 459 + . . scaffold569 GLEAN promoter 202091 203090 0.999661 + . ID=CGI_10009502; scaffold569 WUBlastX DNA_Maverick 202500 203090 352 + . . scaffold569 GLEAN mRNA 203091 203876 0.999661 + . ID=CGI_10009502; scaffold569 WUBlastX LTR_Gypsy 203941 204690 54 + . . scaffold569 WUBlastX DNA_Maverick 204094 205164 704 + . . scaffold57 GLEAN promoter 137 1136 1 + . ID=CGI_10020528; scaffold57 GLEAN mRNA 1137 1868 1 + . ID=CGI_10020528; scaffold57 GLEAN promoter 2208 3207 0.810616 + . ID=CGI_10020530; scaffold57 GLEAN mRNA 3208 18413 0.810616 + . ID=CGI_10020530; scaffold57 WUBlastX DNA_En-Spm 3801 4085 20 + . . scaffold57 WUBlastX DNA_En-Spm 3861 4088 68 + . . scaffold57 WUBlastX DNA_En-Spm 4291 4383 32 + . . scaffold57 WUBlastX DNA_En-Spm 4371 4835 130 + . . scaffold57 WUBlastX DNA_En-Spm 4389 5024 58 + . . scaffold57 TRF Tandem_Repeat 4656 4701 92 + . . scaffold57 GLEAN promoter 17516 18515 0.99995 + . ID=CGI_10020531; scaffold57 GLEAN mRNA 18516 18871 0.99995 + . ID=CGI_10020531; scaffold57 GLEAN promoter 19896 20895 0.99995 + . ID=CGI_10020532; scaffold57 GLEAN mRNA 20896 25969 0.99995 + . ID=CGI_10020532; scaffold57 TRF Tandem_Repeat 36051 36163 217 + . . scaffold57 WUBlastX LINE_RTE-X 36501 36728 109 - . . scaffold57 WUBlastX LINE_RTE-X 36842 36892 23 - . . scaffold57 GLEAN promoter 42021 43020 1 + . ID=CGI_10020533; scaffold57 GLEAN mRNA 43021 43978 1 + . ID=CGI_10020533; scaffold57 GLEAN promoter 48405 49404 1 + . ID=CGI_10020534; scaffold57 TRF Tandem_Repeat 48820 48874 85 + . . scaffold57 GLEAN mRNA 49405 50063 1 + . ID=CGI_10020534; scaffold57 GLEAN promoter 52645 53644 1 + . ID=CGI_10020535; scaffold57 GLEAN mRNA 53645 54016 1 + . ID=CGI_10020535; scaffold57 TRF Tandem_Repeat 57857 58117 359 + . . scaffold57 TRF Tandem_Repeat 57857 58085 359 + . . scaffold57 GLEAN mRNA 58352 60491 0.999999 - . ID=CGI_10020536; scaffold57 WUBlastX DNA_TcMar-Tc1 59588 59899 59 - . . scaffold57 WUBlastX DNA_TcMar-Tc1 59666 59938 71 - . . scaffold57 GLEAN promoter 60041 61040 0.999676 + . ID=CGI_10020537; scaffold57 GLEAN promoter 60492 61491 0.999999 - . ID=CGI_10020536; scaffold57 GLEAN mRNA 61041 73572 0.999676 + . ID=CGI_10020537; scaffold57 TRF Tandem_Repeat 68470 68499 60 + . . scaffold57 GLEAN mRNA 74560 92111 0.811123 - . ID=CGI_10020538; scaffold57 TRF Tandem_Repeat 74895 75584 465 + . . scaffold57 TRF Tandem_Repeat 74896 75382 218 + . . scaffold57 TRF Tandem_Repeat 75116 75584 406 + . . scaffold57 TRF Tandem_Repeat 75407 75584 223 + . . scaffold57 TRF Tandem_Repeat 78565 79335 735 + . . scaffold57 TRF Tandem_Repeat 78565 79160 721 + . . scaffold57 GLEAN promoter 89803 90802 0.364313 + . ID=CGI_10020539; scaffold57 GLEAN mRNA 90803 113302 0.364313 + . ID=CGI_10020539; scaffold57 GLEAN promoter 92112 93111 0.811123 - . ID=CGI_10020538; scaffold57 TRF Tandem_Repeat 110449 112068 2286 + . . scaffold57 TRF Tandem_Repeat 114205 114265 122 + . . scaffold57 TRF Tandem_Repeat 114311 114364 108 + . . scaffold57 GLEAN promoter 116051 117050 0.6557 + . ID=CGI_10020540; scaffold57 GLEAN mRNA 117051 128457 0.6557 + . ID=CGI_10020540; scaffold57 TRF Tandem_Repeat 120987 121081 66 + . . scaffold57 TRF Tandem_Repeat 123098 123994 995 + . . scaffold57 GLEAN mRNA 131481 133825 0.999593 - . ID=CGI_10020541; scaffold57 GLEAN promoter 133826 134825 0.999593 - . ID=CGI_10020541; scaffold57 GLEAN mRNA 134820 138016 1 - . ID=CGI_10020542; scaffold57 GLEAN promoter 138017 139016 1 - . ID=CGI_10020542; scaffold57 GLEAN promoter 139708 140707 0.473851 + . ID=CGI_10020543; scaffold57 GLEAN mRNA 140708 149936 0.473851 + . ID=CGI_10020543; scaffold57 GLEAN mRNA 152046 188805 0.998703 - . ID=CGI_10020544; scaffold57 TRF Tandem_Repeat 170271 170320 100 + . . scaffold57 GLEAN promoter 174786 175785 0.533671 + . ID=CGI_10020545; scaffold57 GLEAN mRNA 175786 215064 0.533671 + . ID=CGI_10020545; scaffold57 TRF Tandem_Repeat 182026 182578 681 + . . scaffold57 GLEAN promoter 188806 189805 0.998703 - . ID=CGI_10020544; scaffold57 WUBlastX LINE_RTE-X 191992 192315 44 - . . scaffold57 WUBlastX LINE_RTE-X 192124 192510 142 - . . scaffold57 WUBlastX LINE_RTE-X 192277 192561 65 - . . scaffold57 TRF Tandem_Repeat 193093 193146 63 + . . scaffold57 TRF Tandem_Repeat 193093 193139 67 + . . scaffold57 WUBlastX LINE_RTE-X 205773 206186 178 - . . scaffold57 WUBlastX LINE_RTE-X 205860 206249 128 - . . scaffold57 WUBlastX LINE_RTE-X 209555 210142 166 - . . scaffold57 WUBlastX LINE_RTE-X 209591 210064 280 - . . scaffold57 TRF Tandem_Repeat 227655 227795 122 + . . scaffold57 TRF Tandem_Repeat 229505 229558 73 + . . scaffold57 TRF Tandem_Repeat 229506 229555 57 + . . scaffold57 TRF Tandem_Repeat 230711 231784 1472 + . . scaffold57 GLEAN promoter 231216 232215 0.999991 + . ID=CGI_10020546; scaffold57 GLEAN mRNA 232216 234450 0.999991 + . ID=CGI_10020546; scaffold57 GLEAN mRNA 245187 251382 0.991802 - . ID=CGI_10020547; scaffold57 TRF Tandem_Repeat 247591 247966 626 + . . scaffold57 GLEAN promoter 251383 252382 0.991802 - . ID=CGI_10020547; scaffold57 GLEAN mRNA 251454 285615 0.780178 - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 254477 254532 103 + . . scaffold57 TRF Tandem_Repeat 258540 258577 69 + . . scaffold57 TRF Tandem_Repeat 270375 270404 51 + . . scaffold57 TRF Tandem_Repeat 280614 280673 120 + . . scaffold57 TRF Tandem_Repeat 280770 280799 60 + . . scaffold57 GLEAN promoter 285616 286615 0.780178 - . ID=CGI_10020548; scaffold57 TRF Tandem_Repeat 285682 285706 50 + . . scaffold57 TRF Tandem_Repeat 285926 285972 94 + . . scaffold57 GLEAN mRNA 289160 294391 1 - . ID=CGI_10020549; scaffold57 TRF Tandem_Repeat 290539 290626 160 + . . scaffold57 WUBlastX DNA_hAT 291531 291824 150 - . . scaffold57 WUBlastX DNA_hAT 291582 291908 120 - . . scaffold57 WUBlastX DNA_hAT 292578 292751 98 - . . scaffold57 WUBlastX DNA_hAT 292608 292799 104 - . . scaffold57 TRF Tandem_Repeat 292959 293018 111 + . . scaffold57 WUBlastX DNA_hAT 293036 293167 68 - . . scaffold57 WUBlastX DNA_hAT 293537 293683 26 - . . scaffold57 WUBlastX DNA_hAT 293606 294529 499 - . . scaffold57 GLEAN promoter 294392 295391 1 - . ID=CGI_10020549; scaffold57 TRF Tandem_Repeat 296401 296428 56 + . . scaffold57 GLEAN promoter 296762 297761 1 + . ID=CGI_10020550; scaffold57 GLEAN mRNA 297762 301894 1 + . ID=CGI_10020550; scaffold57 WUBlastX DNA_hAT 297789 298679 436 + . . scaffold57 WUBlastX DNA_hAT 299319 299462 90 + . . scaffold57 WUBlastX DNA_hAT 299872 300048 103 + . . scaffold57 TRF Tandem_Repeat 300076 300142 134 + . . scaffold57 TRF Tandem_Repeat 300174 300200 54 + . . scaffold57 WUBlastX DNA_hAT 300410 300712 136 + . . scaffold57 WUBlastX DNA_hAT 300416 301078 127 + . . scaffold57 TRF Tandem_Repeat 305961 306003 86 + . . scaffold57 TRF Tandem_Repeat 306930 307579 494 + . . scaffold57 TRF Tandem_Repeat 306937 307579 514 + . . scaffold57 TRF Tandem_Repeat 307039 307571 264 + . . scaffold57 TRF Tandem_Repeat 307693 307837 150 + . . scaffold57 TRF Tandem_Repeat 307963 308296 650 + . . scaffold57 TRF Tandem_Repeat 308450 308497 96 + . . scaffold57 TRF Tandem_Repeat 309413 309819 168 + . . scaffold57 TRF Tandem_Repeat 309547 309819 314 + . . scaffold57 TRF Tandem_Repeat 314894 314947 108 + . . scaffold57 TRF Tandem_Repeat 315594 315639 92 + . . scaffold57 TRF Tandem_Repeat 318782 319012 347 + . . scaffold57 TRF Tandem_Repeat 318888 318986 71 + . . scaffold57 GLEAN mRNA 327473 334730 0.705627 - . ID=CGI_10020551; scaffold57 TRF Tandem_Repeat 329387 329718 587 + . . scaffold57 TRF Tandem_Repeat 331675 331711 74 + . . scaffold57 GLEAN promoter 334731 335730 0.705627 - . ID=CGI_10020551; scaffold57 TRF Tandem_Repeat 339787 339833 87 + . . scaffold57 TRF Tandem_Repeat 344429 344698 454 + . . scaffold57 TRF Tandem_Repeat 344429 344709 372 + . . scaffold57 TRF Tandem_Repeat 345870 346176 472 + . . scaffold57 TRF Tandem_Repeat 345873 346203 414 + . . scaffold57 TRF Tandem_Repeat 346465 346554 180 + . . scaffold57 TRF Tandem_Repeat 347295 347335 82 + . . scaffold57 TRF Tandem_Repeat 347933 348013 126 + . . scaffold57 TRF Tandem_Repeat 352770 352819 100 + . . scaffold57 TRF Tandem_Repeat 353650 353697 96 + . . scaffold57 TRF Tandem_Repeat 353855 353900 92 + . . scaffold57 TRF Tandem_Repeat 356392 356468 61 + . . scaffold57 TRF Tandem_Repeat 356393 356456 76 + . . scaffold57 TRF Tandem_Repeat 356946 356993 69 + . . scaffold57 GLEAN promoter 360110 361109 0.943475 + . ID=CGI_10020552; scaffold57 TRF Tandem_Repeat 360566 360595 60 + . . scaffold57 GLEAN mRNA 361110 382565 0.943475 + . ID=CGI_10020552; scaffold57 GLEAN mRNA 361168 396087 0.322076 - . ID=CGI_10020553; scaffold57 TRF Tandem_Repeat 375484 376145 718 + . . scaffold57 TRF Tandem_Repeat 377038 377103 107 + . . scaffold57 TRF Tandem_Repeat 377039 377100 81 + . . scaffold57 WUBlastX LINE_RTE-X 378097 379374 475 - . . scaffold57 WUBlastX LINE_RTE-X 379406 379696 221 - . . scaffold57 WUBlastX LINE_L2 379412 379807 48 - . . scaffold57 WUBlastX LINE_CR1 379418 379747 55 - . . scaffold57 TRF Tandem_Repeat 383328 383657 412 + . . scaffold57 TRF Tandem_Repeat 384539 385383 698 + . . scaffold57 TRF Tandem_Repeat 384539 385378 667 + . . scaffold57 TRF Tandem_Repeat 384539 385379 441 + . . scaffold57 GLEAN promoter 396088 397087 0.322076 - . ID=CGI_10020553; scaffold57 GLEAN mRNA 396339 398210 0.999676 - . ID=CGI_10020554; scaffold57 GLEAN promoter 396393 397392 0.999928 + . ID=CGI_10020555; scaffold57 GLEAN mRNA 397393 406335 0.999928 + . ID=CGI_10020555; scaffold57 GLEAN promoter 398211 399210 0.999676 - . ID=CGI_10020554; scaffold57 TRF Tandem_Repeat 406336 406376 82 + . . scaffold57 TRF Tandem_Repeat 406524 406557 68 + . . scaffold57 TRF Tandem_Repeat 410667 412016 1480 + . . scaffold57 TRF Tandem_Repeat 413036 413076 82 + . . scaffold57 GLEAN promoter 413667 414666 1 + . ID=CGI_10020556; scaffold57 GLEAN mRNA 414667 416176 1 + . ID=CGI_10020556; scaffold57 GLEAN mRNA 420810 429176 0.999221 - . ID=CGI_10020557; scaffold57 TRF Tandem_Repeat 422091 422226 154 + . . scaffold57 TRF Tandem_Repeat 422455 422496 84 + . . scaffold57 TRF Tandem_Repeat 423085 423122 76 + . . scaffold57 TRF Tandem_Repeat 423368 423443 93 + . . scaffold57 GLEAN promoter 429177 430176 0.999221 - . ID=CGI_10020557; scaffold57 GLEAN mRNA 432130 435107 1 - . ID=CGI_10020558; scaffold57 GLEAN promoter 434447 435446 1 + . ID=CGI_10020559; scaffold57 GLEAN promoter 435108 436107 1 - . ID=CGI_10020558; scaffold57 GLEAN mRNA 435447 439422 1 + . ID=CGI_10020559; scaffold57 GLEAN mRNA 439517 443561 0.588875 - . ID=CGI_10020560; scaffold57 GLEAN promoter 443562 444561 0.588875 - . ID=CGI_10020560; scaffold57 GLEAN promoter 443980 444979 1 + . ID=CGI_10020561; scaffold57 GLEAN mRNA 444980 452251 1 + . ID=CGI_10020561; scaffold57 TRF Tandem_Repeat 445055 445121 134 + . . scaffold57 WUBlastX LINE_RTE-BovB 445811 445909 45 - . . scaffold57 WUBlastX LINE_RTE-BovB 445899 446036 47 - . . scaffold57 WUBlastX LINE_RTE-BovB 445911 446015 54 - . . scaffold57 WUBlastX LINE_RTE-BovB 446209 446307 45 - . . scaffold57 WUBlastX LINE_RTE-BovB 446300 446407 56 - . . scaffold57 TRF Tandem_Repeat 450682 450707 52 + . . scaffold57 TRF Tandem_Repeat 452293 452396 190 + . . scaffold57 TRF Tandem_Repeat 454190 454276 165 + . . scaffold57 TRF Tandem_Repeat 454197 454326 146 + . . scaffold57 TRF Tandem_Repeat 457030 457094 123 + . . scaffold57 GLEAN mRNA 457342 465545 0.999222 - . ID=CGI_10020562; scaffold57 TRF Tandem_Repeat 460392 460639 225 + . . scaffold57 TRF Tandem_Repeat 462168 462442 306 + . . scaffold57 TRF Tandem_Repeat 463299 463610 282 + . . scaffold57 TRF Tandem_Repeat 463303 463610 128 + . . scaffold57 TRF Tandem_Repeat 464522 464868 626 + . . scaffold57 GLEAN promoter 465546 466545 0.999222 - . ID=CGI_10020562; scaffold57 TRF Tandem_Repeat 469637 469674 76 + . . scaffold57 TRF Tandem_Repeat 474790 474939 167 + . . scaffold57 TRF Tandem_Repeat 474798 474925 177 + . . scaffold57 TRF Tandem_Repeat 474937 475160 162 + . . scaffold57 WUBlastX LINE_RTE-X 476473 476937 46 - . . scaffold57 WUBlastX LINE_RTE-X 476473 476799 46 - . . scaffold57 GLEAN promoter 476664 477663 0.689419 + . ID=CGI_10020563; scaffold57 WUBlastX LINE_RTE-X 476889 477104 33 - . . scaffold57 WUBlastX LINE_RTE-X 477127 477255 25 - . . scaffold57 GLEAN mRNA 477664 502820 0.689419 + . ID=CGI_10020563; scaffold57 TRF Tandem_Repeat 493521 493578 55 + . . scaffold57 TRF Tandem_Repeat 493522 493578 71 + . . scaffold57 TRF Tandem_Repeat 505085 506070 1200 + . . scaffold57 GLEAN promoter 505826 506825 1 + . ID=CGI_10020564; scaffold57 GLEAN mRNA 506826 512408 1 + . ID=CGI_10020564; scaffold57 WUBlastX LINE_L1-Tx1 513275 513757 220 + . . scaffold57 WUBlastX LINE_L1 513290 513862 56 + . . scaffold57 TRF Tandem_Repeat 514382 514408 54 + . . scaffold57 GLEAN promoter 521691 522690 0.990029 + . ID=CGI_10020565; scaffold57 GLEAN mRNA 522691 542725 0.990029 + . ID=CGI_10020565; scaffold57 TRF Tandem_Repeat 533396 533421 52 + . . scaffold57 TRF Tandem_Repeat 540021 540058 76 + . . scaffold57 WUBlastX LINE_L1-Tx1 545129 547807 40 - . . scaffold57 WUBlastX LINE_L1-Tx1 545798 546526 50 - . . scaffold57 WUBlastX LINE_L1-Tx1 546110 546508 64 - . . scaffold57 WUBlastX LINE_L1-Tx1 546474 547304 124 - . . scaffold57 WUBlastX LINE_L1-Tx1 546603 547367 274 - . . scaffold57 WUBlastX LINE_L1 547367 548209 171 - . . scaffold57 WUBlastX LINE_L1-Tx1 548187 548777 168 - . . scaffold57 WUBlastX LINE_L2 549218 549793 48 - . . scaffold57 WUBlastX LINE_L2 549221 549673 119 - . . scaffold57 WUBlastX LINE_RTE-X 552812 553405 36 + . . scaffold57 WUBlastX LINE_RTE-X 552941 553450 90 + . . scaffold57 TRF Tandem_Repeat 555602 555659 116 + . . scaffold57 TRF Tandem_Repeat 568212 568241 51 + . . scaffold57 TRF Tandem_Repeat 572640 572678 78 + . . scaffold57 TRF Tandem_Repeat 577167 577674 538 + . . scaffold57 TRF Tandem_Repeat 577773 578008 276 + . . scaffold57 TRF Tandem_Repeat 577805 577926 56 + . . scaffold57 TRF Tandem_Repeat 577825 577947 65 + . . scaffold57 WUBlastX LINE_L1 578661 579473 213 + . . scaffold57 WUBlastX LINE_CR1 579439 580083 42 + . . scaffold57 WUBlastX LINE_RTE-X 579640 581766 568 + . . scaffold57 WUBlastX LINE_RTE-X 581783 582064 176 + . . scaffold57 WUBlastX LINE_RTE-X 582042 582968 309 + . . scaffold57 TRF Tandem_Repeat 584738 584783 92 + . . scaffold57 TRF Tandem_Repeat 587395 587485 146 + . . scaffold57 TRF Tandem_Repeat 587451 587540 99 + . . scaffold57 WUBlastX DNA_Sola 608411 608824 36 - . . scaffold57 TRF Tandem_Repeat 615141 615190 91 + . . scaffold57 WUBlastX LINE_RTE-X 619001 619831 191 - . . scaffold57 WUBlastX LINE_RTE-X 619804 620262 204 - . . scaffold57 WUBlastX LINE_RTE-X 619843 620670 190 - . . scaffold57 WUBlastX LINE_RTE-X 620420 620839 107 - . . scaffold57 WUBlastX LINE_L2 620426 620923 29 - . . scaffold57 TRF Tandem_Repeat 620939 620970 64 + . . scaffold57 GLEAN promoter 643575 644574 0.990832 + . ID=CGI_10020567; scaffold57 GLEAN mRNA 644575 644940 0.990832 + . ID=CGI_10020567; scaffold570 GLEAN promoter 1 343 1 + . ID=CGI_10000262; scaffold570 GLEAN mRNA 344 1499 1 + . ID=CGI_10000262; scaffold572 TRF Tandem_Repeat 4422 5042 825 + . . scaffold572 GLEAN promoter 4730 5729 0.671543 + . ID=CGI_10001775; scaffold572 GLEAN mRNA 5730 19170 0.671543 + . ID=CGI_10001775; scaffold572 TRF Tandem_Repeat 13730 13771 57 + . . scaffold572 WUBlastX LTR_Gypsy 15519 16118 56 - . . scaffold572 TRF Tandem_Repeat 16785 17587 779 + . . scaffold572 TRF Tandem_Repeat 16831 17587 1105 + . . scaffold572 GLEAN mRNA 18721 19903 0.999093 - . ID=CGI_10001776; scaffold572 GLEAN promoter 19904 20903 0.999093 - . ID=CGI_10001776; scaffold572 GLEAN mRNA 20738 21322 0.689556 - . ID=CGI_10001777; scaffold572 GLEAN promoter 21323 22322 0.689556 - . ID=CGI_10001777; scaffold572 TRF Tandem_Repeat 22229 22290 70 + . . scaffold572 WUBlastX LTR_Gypsy 23560 23841 57 + . . scaffold574 TRF Tandem_Repeat 435 487 106 + . . scaffold574 TRF Tandem_Repeat 670 702 66 + . . scaffold574 TRF Tandem_Repeat 4393 4565 145 + . . scaffold574 GLEAN mRNA 7045 21595 0.702385 - . ID=CGI_10008280; scaffold574 GLEAN promoter 20917 21916 0.999676 + . ID=CGI_10008281; scaffold574 GLEAN promoter 21596 22595 0.702385 - . ID=CGI_10008280; scaffold574 GLEAN mRNA 21917 25949 0.999676 + . ID=CGI_10008281; scaffold574 TRF Tandem_Repeat 34321 34353 66 + . . scaffold574 TRF Tandem_Repeat 34505 34663 138 + . . scaffold574 TRF Tandem_Repeat 34647 34734 79 + . . scaffold574 TRF Tandem_Repeat 34718 34904 223 + . . scaffold574 WUBlastX LINE_RTE-X 35282 35725 51 - . . scaffold574 WUBlastX LINE_RTE-X 35411 35743 66 - . . scaffold574 WUBlastX LINE_RTE-X 35728 36363 116 - . . scaffold574 WUBlastX LINE_RTE-X 35863 36363 218 - . . scaffold574 WUBlastX LINE_RTE-X 35875 36468 175 - . . scaffold574 WUBlastX LINE_RTE-X 36380 36568 81 - . . scaffold574 WUBlastX LINE_RTE-X 36528 36995 233 - . . scaffold574 WUBlastX LINE_RTE-X 36666 37067 236 - . . scaffold574 WUBlastX LINE_RTE-X 36991 37434 81 - . . scaffold574 WUBlastX LINE_L1 36991 37203 90 - . . scaffold574 WUBlastX LINE_RTE-X 37322 38584 88 - . . scaffold574 WUBlastX LINE_RTE-X 37943 38584 164 - . . scaffold574 WUBlastX LINE_L1 38746 39087 124 - . . scaffold574 WUBlastX LINE_L2 38776 39213 44 - . . scaffold574 WUBlastX LINE_L1 39105 39254 34 - . . scaffold574 WUBlastX LTR_Pao 44804 45748 468 - . . scaffold574 WUBlastX LTR_DIRS 49640 50599 39 - . . scaffold574 WUBlastX LTR_DIRS 49952 50692 100 - . . scaffold574 WUBlastX LTR_DIRS 50640 51080 90 - . . scaffold574 WUBlastX LTR_DIRS 50655 51182 82 - . . scaffold574 WUBlastX LTR_DIRS 50679 51320 27 - . . scaffold574 WUBlastX LTR_Pao 53925 53990 28 + . . scaffold574 WUBlastX LTR_Pao 53928 54026 24 + . . scaffold574 WUBlastX LTR_Pao 54164 54838 201 + . . scaffold574 WUBlastX DNA_TcMar-Fot1 55482 55760 55 + . . scaffold574 WUBlastX DNA_TcMar-Fot1 55802 55936 50 + . . scaffold574 WUBlastX DNA_TcMar-Fot1 55939 56121 54 + . . scaffold574 WUBlastX DNA_TcMar-Fot1 56112 56543 128 + . . scaffold574 WUBlastX DNA_TcMar-Fot1 56151 56615 77 + . . scaffold574 WUBlastX DNA_TcMar-Fot1 56151 56384 144 + . . scaffold574 WUBlastX DNA_TcMar-Fot1 56157 56441 133 + . . scaffold574 TRF Tandem_Repeat 58254 58301 55 + . . scaffold574 TRF Tandem_Repeat 60040 60075 54 + . . scaffold574 TRF Tandem_Repeat 60165 60370 412 + . . scaffold574 TRF Tandem_Repeat 60847 60903 114 + . . scaffold574 TRF Tandem_Repeat 66788 66820 50 + . . scaffold574 TRF Tandem_Repeat 66818 66844 54 + . . scaffold574 TRF Tandem_Repeat 67099 67123 50 + . . scaffold574 WUBlastX LINE_RTE-X 74172 74438 75 - . . scaffold574 WUBlastX LINE_RTE-X 74292 74438 89 - . . scaffold574 TRF Tandem_Repeat 94676 94739 128 + . . scaffold574 GLEAN promoter 98432 99431 0.5 + . ID=CGI_10008282; scaffold574 GLEAN mRNA 99432 102083 0.5 + . ID=CGI_10008282; scaffold574 GLEAN promoter 104890 105889 0.728739 + . ID=CGI_10008283; scaffold574 GLEAN mRNA 105890 118060 0.728739 + . ID=CGI_10008283; scaffold574 TRF Tandem_Repeat 109012 109037 52 + . . scaffold574 TRF Tandem_Repeat 111654 111678 50 + . . scaffold574 GLEAN promoter 118356 119355 1 + . ID=CGI_10008284; scaffold574 GLEAN mRNA 119356 125174 1 + . ID=CGI_10008284; scaffold574 GLEAN mRNA 129575 149788 0.747044 - . ID=CGI_10008285; scaffold574 GLEAN promoter 149789 150788 0.747044 - . ID=CGI_10008285; scaffold574 TRF Tandem_Repeat 156832 156883 52 + . . scaffold574 TRF Tandem_Repeat 157733 157766 50 + . . scaffold574 TRF Tandem_Repeat 169116 169152 74 + . . scaffold574 GLEAN mRNA 195366 205349 1 - . ID=CGI_10008286; scaffold574 GLEAN promoter 205350 205868 1 - . ID=CGI_10008286; scaffold575 TRF Tandem_Repeat 10512 10629 209 + . . scaffold575 GLEAN promoter 11366 12365 0.920529 + . ID=CGI_10006995; scaffold575 GLEAN mRNA 12366 29752 0.920529 + . ID=CGI_10006995; scaffold575 TRF Tandem_Repeat 15487 15786 98 + . . scaffold575 TRF Tandem_Repeat 15487 15702 267 + . . scaffold575 TRF Tandem_Repeat 15678 15832 81 + . . scaffold575 TRF Tandem_Repeat 15888 16026 197 + . . scaffold575 GLEAN mRNA 37754 53476 0.990447 - . ID=CGI_10006996; scaffold575 TRF Tandem_Repeat 43420 43448 51 + . . scaffold575 GLEAN promoter 53305 54304 1 + . ID=CGI_10006997; scaffold575 GLEAN promoter 53477 54476 0.990447 - . ID=CGI_10006996; scaffold575 GLEAN mRNA 54305 56401 1 + . ID=CGI_10006997; scaffold575 WUBlastX LINE_R2-Hero 84318 84434 53 + . . scaffold575 WUBlastX LINE_R2-Hero 84810 85103 61 + . . scaffold575 WUBlastX LINE_R2-Hero 84888 85115 95 + . . scaffold575 TRF Tandem_Repeat 90254 90284 53 + . . scaffold575 WUBlastX LTR_Gypsy 93367 94230 31 + . . scaffold575 WUBlastX LTR_Gypsy 93541 94200 49 + . . scaffold575 WUBlastX LTR_Gypsy 93721 94227 77 + . . scaffold575 WUBlastX LTR_Gypsy-Troyk 93883 96648 119 + . . scaffold575 WUBlastX LTR_Gypsy 94639 98031 1234 + . . scaffold575 WUBlastX LTR_Gypsy-Cigr 95389 98157 1253 + . . scaffold575 WUBlastX LTR_Gypsy 96955 98622 651 + . . scaffold575 WUBlastX LTR_Gypsy 98494 98649 28 + . . scaffold575 GLEAN mRNA 103358 116401 0.999676 - . ID=CGI_10006998; scaffold575 TRF Tandem_Repeat 114263 114311 98 + . . scaffold575 GLEAN promoter 116402 117401 0.999676 - . ID=CGI_10006998; scaffold575 GLEAN promoter 118463 119462 1 + . ID=CGI_10006999; scaffold575 GLEAN mRNA 119463 121839 1 + . ID=CGI_10006999; scaffold575 TRF Tandem_Repeat 128601 128695 174 + . . scaffold575 GLEAN promoter 130905 131904 0.998259 + . ID=CGI_10007000; scaffold575 GLEAN mRNA 131905 138457 0.998259 + . ID=CGI_10007000; scaffold575 TRF Tandem_Repeat 133482 133526 90 + . . scaffold575 WUBlastX LINE_L2 139518 139784 55 + . . scaffold575 WUBlastX LINE_L1 139593 139790 104 + . . scaffold575 WUBlastX LINE_L1-Tx1 139593 139886 64 + . . scaffold575 WUBlastX LINE_RTE-X 139995 140246 62 + . . scaffold575 WUBlastX LINE_RTE-X 140049 140285 53 + . . scaffold575 TRF Tandem_Repeat 140586 140626 52 + . . scaffold575 WUBlastX LTR_Gypsy-Cigr 141593 142186 59 - . . scaffold575 WUBlastX LTR_Gypsy 141713 142735 110 - . . scaffold575 WUBlastX LTR_Gypsy 142190 142945 122 - . . scaffold575 WUBlastX LTR_Gypsy-Cigr 142481 142984 179 - . . scaffold575 GLEAN mRNA 145353 162107 0.486824 - . ID=CGI_10007002; scaffold575 TRF Tandem_Repeat 151729 151773 81 + . . scaffold575 TRF Tandem_Repeat 153831 153871 82 + . . scaffold575 WUBlastX DNA_Sola 158464 158607 49 - . . scaffold575 WUBlastX DNA_Sola 158866 158928 26 - . . scaffold575 WUBlastX DNA_Sola 159108 159179 25 - . . scaffold575 WUBlastX DNA_Sola 159123 159185 25 - . . scaffold575 WUBlastX DNA_Sola 159430 159567 32 - . . scaffold575 WUBlastX DNA_Sola 159454 159531 41 - . . scaffold575 GLEAN promoter 162108 163107 0.486824 - . ID=CGI_10007002; scaffold576 TRF Tandem_Repeat 557 1058 277 + . . scaffold576 TRF Tandem_Repeat 558 1051 199 + . . scaffold576 GLEAN mRNA 6393 10178 0.999676 - . ID=CGI_10018748; scaffold576 TRF Tandem_Repeat 9962 10008 94 + . . scaffold576 GLEAN promoter 10179 11178 0.999676 - . ID=CGI_10018748; scaffold576 GLEAN mRNA 13606 21615 0.999999 - . ID=CGI_10018749; scaffold576 TRF Tandem_Repeat 15558 15654 133 + . . scaffold576 GLEAN promoter 21616 22615 0.999999 - . ID=CGI_10018749; scaffold576 GLEAN mRNA 25141 25398 0.776794 - . ID=CGI_10018750; scaffold576 GLEAN promoter 25399 26398 0.776794 - . ID=CGI_10018750; scaffold576 WUBlastX LTR_Gypsy 31979 32065 33 - . . scaffold576 WUBlastX LTR_Gypsy 31997 32065 39 - . . scaffold576 WUBlastX LTR_Gypsy 32058 32894 358 - . . scaffold576 WUBlastX LTR_Gypsy 32846 32977 126 - . . scaffold576 WUBlastX LTR_Gypsy 32846 33001 108 - . . scaffold576 WUBlastX LTR_Gypsy 33249 33341 28 - . . scaffold576 WUBlastX LTR_Gypsy-Cigr 33355 33498 104 - . . scaffold576 TRF Tandem_Repeat 40174 40199 52 + . . scaffold576 WUBlastX LINE_RTE-X 44280 44915 25 + . . scaffold576 GLEAN mRNA 46331 50859 0.851914 - . ID=CGI_10018751; scaffold576 GLEAN promoter 50860 51859 0.851914 - . ID=CGI_10018751; scaffold576 GLEAN promoter 51347 52346 0.482544 + . ID=CGI_10018752; scaffold576 GLEAN mRNA 52347 59463 0.482544 + . ID=CGI_10018752; scaffold576 TRF Tandem_Repeat 55331 55377 94 + . . scaffold576 GLEAN mRNA 59739 80906 0.499918 - . ID=CGI_10018753; scaffold576 TRF Tandem_Repeat 69760 69788 58 + . . scaffold576 TRF Tandem_Repeat 75154 76020 1303 + . . scaffold576 TRF Tandem_Repeat 78574 78624 102 + . . scaffold576 TRF Tandem_Repeat 79771 79813 86 + . . scaffold576 GLEAN promoter 80907 81906 0.499918 - . ID=CGI_10018753; scaffold576 GLEAN mRNA 88117 100714 0.998619 - . ID=CGI_10018754; scaffold576 TRF Tandem_Repeat 96176 96211 63 + . . scaffold576 GLEAN promoter 100715 101714 0.998619 - . ID=CGI_10018754; scaffold576 TRF Tandem_Repeat 100749 100790 84 + . . scaffold576 WUBlastX LINE_RTE-X 104033 105145 194 - . . scaffold576 WUBlastX LINE_RTE-X 104411 105151 220 - . . scaffold576 WUBlastX LINE_RTE-X 105155 106552 530 + . . scaffold576 WUBlastX LINE_RTE-X 106515 107480 364 + . . scaffold576 WUBlastX LINE_L2 107703 108116 67 - . . scaffold576 WUBlastX LINE_RTE-X 107781 108131 192 - . . scaffold576 WUBlastX LINE_RTE-X 108143 108346 115 - . . scaffold576 WUBlastX LINE_RTE-X 108295 108543 85 - . . scaffold576 WUBlastX LINE_CR1 108340 108639 67 - . . scaffold576 WUBlastX LINE_RTE-X 108614 109570 48 - . . scaffold576 WUBlastX LINE_RTE-X 109361 109573 75 - . . scaffold576 TRF Tandem_Repeat 110344 111110 928 + . . scaffold576 GLEAN mRNA 113324 126030 0.384406 - . ID=CGI_10018755; scaffold576 TRF Tandem_Repeat 114797 114844 87 + . . scaffold576 GLEAN promoter 126031 127030 0.384406 - . ID=CGI_10018755; scaffold576 WUBlastX DNA_Harbinger 133579 133767 63 + . . scaffold576 WUBlastX DNA_Harbinger 133594 133854 52 + . . scaffold576 TRF Tandem_Repeat 139382 139410 58 + . . scaffold576 WUBlastX LTR_Gypsy-Cigr 145269 145982 120 - . . scaffold576 WUBlastX LTR_Gypsy 145620 145982 225 - . . scaffold576 WUBlastX LTR_ERV1 145961 146035 24 - . . scaffold576 WUBlastX LTR_Gypsy 146272 146658 70 - . . scaffold576 WUBlastX LTR_Gypsy 146368 146664 71 - . . scaffold576 WUBlastX LTR_Gypsy 146425 146640 90 - . . scaffold576 WUBlastX LTR_Gypsy 146660 147265 228 - . . scaffold576 WUBlastX LTR_Gypsy-Cigr 146771 147760 381 - . . scaffold576 WUBlastX LTR_Gypsy 147579 147929 117 - . . scaffold576 WUBlastX LTR_Gypsy-Cigr 147874 148038 139 - . . scaffold576 WUBlastX LTR_ERV1 147892 148146 38 - . . scaffold576 WUBlastX LTR_Gypsy 148212 148409 44 - . . scaffold576 WUBlastX LTR_Gypsy 148344 148436 31 - . . scaffold576 WUBlastX LTR_Gypsy 148447 148581 26 - . . scaffold576 WUBlastX LTR_Pao 155252 155479 85 - . . scaffold576 WUBlastX LTR_Pao 155261 156121 81 - . . scaffold576 WUBlastX LTR_Pao 155613 157337 115 - . . scaffold576 WUBlastX LTR_Pao 155861 156121 117 - . . scaffold576 WUBlastX LTR_Pao 155906 156121 120 - . . scaffold576 WUBlastX LTR_Pao 156021 157283 134 - . . scaffold576 WUBlastX LTR_Pao 156297 157277 176 - . . scaffold576 WUBlastX LTR_Pao 157309 157407 33 - . . scaffold576 WUBlastX LTR_Pao 157386 157544 51 - . . scaffold576 WUBlastX LTR_Pao 157392 157526 52 - . . scaffold576 WUBlastX LTR_Pao 157656 157895 119 - . . scaffold576 WUBlastX LTR_Pao 157719 157946 125 - . . scaffold576 WUBlastX LTR_Pao 157958 158197 70 - . . scaffold576 WUBlastX LTR_Pao 158024 158254 40 - . . scaffold576 WUBlastX LTR_Pao 158030 158206 80 - . . scaffold576 WUBlastX LTR_Pao 158652 158819 31 - . . scaffold576 TRF Tandem_Repeat 159228 159287 84 + . . scaffold576 TRF Tandem_Repeat 159228 159287 66 + . . scaffold576 TRF Tandem_Repeat 159869 159918 82 + . . scaffold576 TRF Tandem_Repeat 160085 160110 52 + . . scaffold576 TRF Tandem_Repeat 160355 160393 64 + . . scaffold576 TRF Tandem_Repeat 162854 162934 81 + . . scaffold576 TRF Tandem_Repeat 162859 162934 125 + . . scaffold576 WUBlastX DNA_TcMar-Tc1 163041 163442 227 - . . scaffold576 WUBlastX DNA_TcMar-Tc1 163041 163991 174 - . . scaffold576 TRF Tandem_Repeat 166911 166962 97 + . . scaffold576 GLEAN promoter 167376 168375 0.999004 + . ID=CGI_10018756; scaffold576 GLEAN mRNA 168376 172127 0.999004 + . ID=CGI_10018756; scaffold576 GLEAN promoter 173731 174730 0.556817 + . ID=CGI_10018757; scaffold576 GLEAN mRNA 174731 188238 0.556817 + . ID=CGI_10018757; scaffold576 TRF Tandem_Repeat 186332 186371 80 + . . scaffold576 GLEAN promoter 187272 188271 0.99906 + . ID=CGI_10018758; scaffold576 GLEAN mRNA 188272 189729 0.99906 + . ID=CGI_10018758; scaffold576 GLEAN promoter 191040 192039 0.999992 + . ID=CGI_10018759; scaffold576 GLEAN mRNA 192040 196600 0.999992 + . ID=CGI_10018759; scaffold576 GLEAN promoter 200356 201355 0.999999 + . ID=CGI_10018760; scaffold576 GLEAN mRNA 201356 202786 0.999999 + . ID=CGI_10018760; scaffold576 GLEAN promoter 204019 205018 1 + . ID=CGI_10018761; scaffold576 GLEAN mRNA 205019 206449 1 + . ID=CGI_10018761; scaffold576 GLEAN mRNA 208669 208851 0.986676 - . ID=CGI_10018762; scaffold576 GLEAN promoter 208852 209851 0.986676 - . ID=CGI_10018762; scaffold576 GLEAN mRNA 208875 211186 0.999995 - . ID=CGI_10018763; scaffold576 GLEAN promoter 211187 212186 0.999995 - . ID=CGI_10018763; scaffold576 GLEAN mRNA 211479 219775 0.996599 - . ID=CGI_10018764; scaffold576 GLEAN promoter 219776 220775 0.996599 - . ID=CGI_10018764; scaffold576 GLEAN mRNA 220003 241045 0.999949 - . ID=CGI_10018765; scaffold576 TRF Tandem_Repeat 226724 226796 137 + . . scaffold576 TRF Tandem_Repeat 229698 229767 140 + . . scaffold576 GLEAN promoter 241046 242045 0.999949 - . ID=CGI_10018765; scaffold576 TRF Tandem_Repeat 244604 244665 124 + . . scaffold576 GLEAN mRNA 254289 255311 0.999974 - . ID=CGI_10018766; scaffold576 GLEAN promoter 255312 256311 0.999974 - . ID=CGI_10018766; scaffold576 GLEAN promoter 255350 256349 0.999999 + . ID=CGI_10018767; scaffold576 GLEAN mRNA 256350 260140 0.999999 + . ID=CGI_10018767; scaffold576 TRF Tandem_Repeat 257123 257168 92 + . . scaffold576 GLEAN mRNA 263499 274937 0.999676 - . ID=CGI_10018768; scaffold576 GLEAN promoter 274938 275937 0.999676 - . ID=CGI_10018768; scaffold576 GLEAN promoter 274959 275958 0.999676 + . ID=CGI_10018769; scaffold576 GLEAN mRNA 275959 280703 0.999676 + . ID=CGI_10018769; scaffold576 GLEAN mRNA 283488 284262 1 - . ID=CGI_10018770; scaffold576 GLEAN promoter 284263 285262 1 - . ID=CGI_10018770; scaffold576 TRF Tandem_Repeat 285338 285386 98 + . . scaffold576 TRF Tandem_Repeat 285432 285463 64 + . . scaffold576 GLEAN mRNA 286791 295765 1 - . ID=CGI_10018771; scaffold576 TRF Tandem_Repeat 290991 291025 70 + . . scaffold576 GLEAN promoter 295766 296765 1 - . ID=CGI_10018771; scaffold576 TRF Tandem_Repeat 299680 299732 106 + . . scaffold576 TRF Tandem_Repeat 302584 302627 88 + . . scaffold576 TRF Tandem_Repeat 305654 305682 58 + . . scaffold576 TRF Tandem_Repeat 306546 306580 70 + . . scaffold576 TRF Tandem_Repeat 306649 306701 97 + . . scaffold576 GLEAN promoter 307457 308456 0.99928 + . ID=CGI_10018772; scaffold576 GLEAN mRNA 308457 310463 0.99928 + . ID=CGI_10018772; scaffold576 TRF Tandem_Repeat 310562 310597 72 + . . scaffold576 GLEAN mRNA 315203 324696 0.999395 - . ID=CGI_10018773; scaffold576 WUBlastX DNA_hAT 315302 316675 183 - . . scaffold576 WUBlastX DNA_hAT 315437 316135 185 - . . scaffold576 WUBlastX DNA_hAT 316863 317015 43 - . . scaffold576 WUBlastX DNA_hAT 317774 317989 60 - . . scaffold576 TRF Tandem_Repeat 319105 319150 92 + . . scaffold576 GLEAN promoter 324697 325696 0.999395 - . ID=CGI_10018773; scaffold576 GLEAN promoter 325297 326296 0.999675 + . ID=CGI_10018774; scaffold576 GLEAN mRNA 326297 340746 0.999675 + . ID=CGI_10018774; scaffold576 TRF Tandem_Repeat 331505 332233 696 + . . scaffold576 TRF Tandem_Repeat 334229 334271 86 + . . scaffold576 GLEAN mRNA 341632 350453 1 - . ID=CGI_10018775; scaffold576 TRF Tandem_Repeat 349288 349334 94 + . . scaffold576 GLEAN promoter 350454 351453 1 - . ID=CGI_10018775; scaffold576 TRF Tandem_Repeat 351132 351179 96 + . . scaffold576 TRF Tandem_Repeat 351250 351289 80 + . . scaffold576 TRF Tandem_Repeat 353809 353850 84 + . . scaffold576 GLEAN mRNA 353961 363242 0.999676 - . ID=CGI_10018776; scaffold576 GLEAN promoter 362874 363873 0.998866 + . ID=CGI_10018777; scaffold576 GLEAN promoter 363243 364242 0.999676 - . ID=CGI_10018776; scaffold576 GLEAN mRNA 363874 373264 0.998866 + . ID=CGI_10018777; scaffold576 GLEAN promoter 377352 378351 0.903197 + . ID=CGI_10018778; scaffold576 GLEAN mRNA 378352 397974 0.903197 + . ID=CGI_10018778; scaffold576 TRF Tandem_Repeat 386636 386715 132 + . . scaffold576 GLEAN mRNA 397669 405996 0.615405 - . ID=CGI_10018779; scaffold576 GLEAN promoter 405997 406996 0.615405 - . ID=CGI_10018779; scaffold576 TRF Tandem_Repeat 406218 406457 212 + . . scaffold576 TRF Tandem_Repeat 408693 408932 205 + . . scaffold576 GLEAN promoter 411130 412129 0.990821 + . ID=CGI_10018780; scaffold576 GLEAN mRNA 412130 412513 0.990821 + . ID=CGI_10018780; scaffold576 GLEAN mRNA 413126 432443 0.999973 - . ID=CGI_10018781; scaffold576 GLEAN promoter 432444 433443 0.999973 - . ID=CGI_10018781; scaffold576 TRF Tandem_Repeat 436601 436650 75 + . . scaffold576 TRF Tandem_Repeat 437034 437099 123 + . . scaffold576 TRF Tandem_Repeat 438669 438722 99 + . . scaffold576 GLEAN mRNA 442615 444769 0.841376 - . ID=CGI_10018782; scaffold576 WUBlastX LTR_Gypsy 444434 444490 21 - . . scaffold576 GLEAN promoter 444770 445769 0.841376 - . ID=CGI_10018782; scaffold576 WUBlastX LTR_Gypsy 444959 446434 430 - . . scaffold576 WUBlastX LTR_Gypsy 445256 446449 544 - . . scaffold576 WUBlastX LTR_Pao 445880 446665 54 - . . scaffold576 WUBlastX LTR_Pao 446948 447073 20 - . . scaffold576 TRF Tandem_Repeat 449159 449218 66 + . . scaffold576 WUBlastX LINE_L2 450264 450545 69 + . . scaffold576 WUBlastX LINE_L2 450330 450656 109 + . . scaffold576 WUBlastX LINE_L2 450449 451306 234 + . . scaffold576 WUBlastX LINE_L2 450512 451234 425 + . . scaffold576 WUBlastX LINE_L2 451249 451509 153 + . . scaffold576 WUBlastX LINE_L2 451503 451721 142 + . . scaffold576 WUBlastX LINE_L1 451786 451854 28 + . . scaffold576 WUBlastX LINE_RTE-X 455597 456388 37 + . . scaffold576 WUBlastX LINE_RTE-X 456089 456229 39 + . . scaffold576 WUBlastX LINE_RTE-X 456496 456615 27 + . . scaffold576 WUBlastX LINE_RTE-X 456517 456615 34 + . . scaffold576 WUBlastX LINE_RTE-X 456666 456773 20 + . . scaffold576 TRF Tandem_Repeat 457273 457315 86 + . . scaffold576 TRF Tandem_Repeat 458859 459548 932 + . . scaffold576 GLEAN mRNA 462508 476994 0.999947 - . ID=CGI_10018783; scaffold576 TRF Tandem_Repeat 469109 469162 81 + . . scaffold576 GLEAN promoter 476995 477994 0.999947 - . ID=CGI_10018783; scaffold576 GLEAN mRNA 477083 499129 0.277546 - . ID=CGI_10018784; scaffold576 TRF Tandem_Repeat 489508 489560 67 + . . scaffold576 WUBlastX DNA_Academ 493629 493895 62 - . . scaffold576 WUBlastX DNA_Academ 493918 494013 30 - . . scaffold576 GLEAN promoter 499130 500129 0.277546 - . ID=CGI_10018784; scaffold576 WUBlastX DNA_Kolobok 500324 500467 76 + . . scaffold576 TRF Tandem_Repeat 501749 501857 94 + . . scaffold576 TRF Tandem_Repeat 502396 502571 113 + . . scaffold576 TRF Tandem_Repeat 502622 502754 97 + . . scaffold576 TRF Tandem_Repeat 503316 503722 201 + . . scaffold576 TRF Tandem_Repeat 503323 503721 240 + . . scaffold576 TRF Tandem_Repeat 503520 503679 103 + . . scaffold576 TRF Tandem_Repeat 504636 504677 84 + . . scaffold576 WUBlastX LINE_Penelope 515318 515707 99 + . . scaffold576 WUBlastX LINE_Penelope 515366 515785 35 + . . scaffold576 TRF Tandem_Repeat 515935 515985 66 + . . scaffold576 TRF Tandem_Repeat 515936 515985 91 + . . scaffold576 WUBlastX LTR_Ngaro 520998 521693 201 + . . scaffold576 WUBlastX LTR_Ngaro 521778 522287 203 + . . scaffold576 TRF Tandem_Repeat 526056 526099 88 + . . scaffold576 GLEAN mRNA 527885 529192 0.999922 - . ID=CGI_10018786; scaffold576 GLEAN promoter 529193 530192 0.999922 - . ID=CGI_10018786; scaffold576 GLEAN mRNA 533093 534349 0.999979 - . ID=CGI_10018787; scaffold576 GLEAN promoter 534350 535349 0.999979 - . ID=CGI_10018787; scaffold576 GLEAN mRNA 542720 544321 0.911751 - . ID=CGI_10018788; scaffold576 GLEAN promoter 544322 545321 0.911751 - . ID=CGI_10018788; scaffold576 TRF Tandem_Repeat 546982 547025 81 + . . scaffold576 GLEAN promoter 548835 549834 1 + . ID=CGI_10018789; scaffold576 TRF Tandem_Repeat 549347 549417 106 + . . scaffold576 GLEAN mRNA 549835 554310 1 + . ID=CGI_10018789; scaffold576 GLEAN mRNA 558287 566051 1 - . ID=CGI_10018790; scaffold576 GLEAN promoter 565400 566399 1 + . ID=CGI_10018791; scaffold576 GLEAN promoter 566052 567051 1 - . ID=CGI_10018790; scaffold576 GLEAN mRNA 566400 568021 1 + . ID=CGI_10018791; scaffold577 TRF Tandem_Repeat 3025 3061 65 + . . scaffold577 TRF Tandem_Repeat 9093 9155 126 + . . scaffold577 TRF Tandem_Repeat 9185 9224 80 + . . scaffold577 TRF Tandem_Repeat 10521 10560 80 + . . scaffold577 TRF Tandem_Repeat 11836 11891 103 + . . scaffold577 WUBlastX LINE_RTE-X 33529 33816 64 + . . scaffold577 WUBlastX LINE_RTE-X 33628 33795 85 + . . scaffold577 TRF Tandem_Repeat 35210 35264 110 + . . scaffold577 TRF Tandem_Repeat 38697 38831 159 + . . scaffold577 TRF Tandem_Repeat 38832 39283 599 + . . scaffold577 TRF Tandem_Repeat 44504 44685 252 + . . scaffold577 TRF Tandem_Repeat 44507 44659 112 + . . scaffold577 TRF Tandem_Repeat 44520 44717 176 + . . scaffold577 TRF Tandem_Repeat 61225 62482 1769 + . . scaffold577 GLEAN promoter 62501 63500 0.98431 + . ID=CGI_10009916; scaffold577 GLEAN mRNA 63501 94202 0.98431 + . ID=CGI_10009916; scaffold577 TRF Tandem_Repeat 67268 67323 112 + . . scaffold577 TRF Tandem_Repeat 68488 68804 440 + . . scaffold577 TRF Tandem_Repeat 69196 69253 64 + . . scaffold577 TRF Tandem_Repeat 70807 70874 55 + . . scaffold577 TRF Tandem_Repeat 70822 70854 57 + . . scaffold577 TRF Tandem_Repeat 72045 72101 71 + . . scaffold577 TRF Tandem_Repeat 72052 72101 63 + . . scaffold577 TRF Tandem_Repeat 77248 77292 90 + . . scaffold577 TRF Tandem_Repeat 78616 78763 224 + . . scaffold577 TRF Tandem_Repeat 80921 81136 245 + . . scaffold577 TRF Tandem_Repeat 81734 81791 62 + . . scaffold577 TRF Tandem_Repeat 81737 81801 51 + . . scaffold577 TRF Tandem_Repeat 81987 82213 355 + . . scaffold577 TRF Tandem_Repeat 83980 84220 302 + . . scaffold577 TRF Tandem_Repeat 86560 86607 73 + . . scaffold577 TRF Tandem_Repeat 87549 87606 53 + . . scaffold577 TRF Tandem_Repeat 89783 89829 67 + . . scaffold577 TRF Tandem_Repeat 89845 89903 102 + . . scaffold577 TRF Tandem_Repeat 89875 90062 154 + . . scaffold577 WUBlastX LTR_DIRS 104146 105651 425 - . . scaffold577 WUBlastX RC_Helitron 105885 106835 542 + . . scaffold577 TRF Tandem_Repeat 107588 107627 53 + . . scaffold577 GLEAN promoter 113977 114976 0.999451 + . ID=CGI_10009917; scaffold577 WUBlastX LTR_DIRS 114971 115249 80 + . . scaffold577 GLEAN mRNA 114977 115387 0.999451 + . ID=CGI_10009917; scaffold577 WUBlastX RC_Helitron 115482 115568 27 + . . scaffold577 WUBlastX RC_Helitron 115497 116525 279 + . . scaffold577 WUBlastX RC_Helitron 116527 117267 294 + . . scaffold577 WUBlastX RC_Helitron 117261 117683 151 + . . scaffold577 WUBlastX RC_Helitron 117650 118252 24 + . . scaffold577 WUBlastX RC_Helitron 117995 118273 67 + . . scaffold577 GLEAN mRNA 118575 184181 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 123464 123510 55 + . . scaffold577 TRF Tandem_Repeat 125461 125541 135 + . . scaffold577 TRF Tandem_Repeat 126235 126375 98 + . . scaffold577 TRF Tandem_Repeat 131392 131581 229 + . . scaffold577 WUBlastX DNA_hAT-Blackja 148512 148793 68 + . . scaffold577 WUBlastX DNA_hAT-Blackja 150467 150688 29 + . . scaffold577 TRF Tandem_Repeat 163048 163101 55 + . . scaffold577 TRF Tandem_Repeat 164019 164052 50 + . . scaffold577 TRF Tandem_Repeat 166254 166323 122 + . . scaffold577 TRF Tandem_Repeat 167796 167845 57 + . . scaffold577 TRF Tandem_Repeat 168678 168731 67 + . . scaffold577 TRF Tandem_Repeat 168681 168726 67 + . . scaffold577 TRF Tandem_Repeat 172528 172569 59 + . . scaffold577 WUBlastX DNA_Harbinger 182196 182564 383 + . . scaffold577 WUBlastX DNA_Harbinger 182642 183133 328 + . . scaffold577 GLEAN promoter 184182 185181 0.72743 - . ID=CGI_10009918; scaffold577 TRF Tandem_Repeat 184433 184463 62 + . . scaffold577 TRF Tandem_Repeat 190466 190516 77 + . . scaffold577 TRF Tandem_Repeat 191900 191986 104 + . . scaffold577 TRF Tandem_Repeat 192072 192192 136 + . . scaffold577 TRF Tandem_Repeat 192266 192416 176 + . . scaffold577 TRF Tandem_Repeat 203190 203461 356 + . . scaffold577 TRF Tandem_Repeat 208735 208764 51 + . . scaffold577 GLEAN mRNA 226222 228694 1 - . ID=CGI_10009919; scaffold577 TRF Tandem_Repeat 227024 227116 57 + . . scaffold577 TRF Tandem_Repeat 228337 228543 157 + . . scaffold577 GLEAN promoter 228695 229694 1 - . ID=CGI_10009919; scaffold577 TRF Tandem_Repeat 229950 229976 54 + . . scaffold577 GLEAN mRNA 245814 246062 1 - . ID=CGI_10009920; scaffold577 GLEAN promoter 246063 246177 1 - . ID=CGI_10009920; scaffold578 WUBlastX LTR_Gypsy 8292 8654 288 + . . scaffold578 TRF Tandem_Repeat 19037 19083 94 + . . scaffold578 GLEAN mRNA 19761 26602 0.244564 - . ID=CGI_10015109; scaffold578 TRF Tandem_Repeat 20492 20526 52 + . . scaffold578 WUBlastX DNA_Kolobok 21942 22109 42 + . . scaffold578 WUBlastX DNA_Kolobok 22242 22397 48 + . . scaffold578 WUBlastX DNA_Kolobok 23013 23216 90 - . . scaffold578 WUBlastX DNA_Kolobok 23359 23532 88 - . . scaffold578 WUBlastX DNA_Kolobok 23698 23937 73 - . . scaffold578 WUBlastX DNA_Kolobok 23722 23895 84 - . . scaffold578 WUBlastX DNA_Kolobok 23961 24203 51 - . . scaffold578 WUBlastX DNA_Kolobok 24000 24188 78 - . . scaffold578 WUBlastX DNA_Kolobok 24329 24862 210 - . . scaffold578 WUBlastX DNA_P 26237 26533 60 - . . scaffold578 WUBlastX DNA_P 26294 26563 95 - . . scaffold578 GLEAN promoter 26603 27602 0.244564 - . ID=CGI_10015109; scaffold578 WUBlastX LINE_L1-Tx1 32170 33147 89 - . . scaffold578 WUBlastX LINE_L1 32955 33227 65 - . . scaffold578 WUBlastX LINE_L1-Tx1 33303 33479 37 - . . scaffold578 TRF Tandem_Repeat 33848 33915 109 + . . scaffold578 GLEAN promoter 36790 37789 0.651115 + . ID=CGI_10015110; scaffold578 GLEAN mRNA 37790 41913 0.651115 + . ID=CGI_10015110; scaffold578 TRF Tandem_Repeat 46257 46340 60 + . . scaffold578 WUBlastX LINE_L1-Tx1 58960 59598 133 + . . scaffold578 WUBlastX LINE_CR1 58972 59463 166 + . . scaffold578 TRF Tandem_Repeat 70896 70944 98 + . . scaffold578 TRF Tandem_Repeat 76745 77952 1698 + . . scaffold578 TRF Tandem_Repeat 78114 78170 89 + . . scaffold578 TRF Tandem_Repeat 78114 78171 73 + . . scaffold578 GLEAN mRNA 84648 91141 0.83449 - . ID=CGI_10015111; scaffold578 GLEAN promoter 86299 87298 0.9993 + . ID=CGI_10015112; scaffold578 GLEAN mRNA 87299 119527 0.9993 + . ID=CGI_10015112; scaffold578 GLEAN promoter 91142 92141 0.83449 - . ID=CGI_10015111; scaffold578 TRF Tandem_Repeat 94407 94446 59 + . . scaffold578 TRF Tandem_Repeat 103337 103361 50 + . . scaffold578 TRF Tandem_Repeat 109173 109234 115 + . . scaffold578 TRF Tandem_Repeat 127937 127978 84 + . . scaffold578 TRF Tandem_Repeat 134733 134989 388 + . . scaffold578 TRF Tandem_Repeat 134745 135066 86 + . . scaffold578 GLEAN promoter 137497 138496 0.481188 + . ID=CGI_10015113; scaffold578 GLEAN mRNA 138497 139090 0.481188 + . ID=CGI_10015113; scaffold578 GLEAN mRNA 141388 142598 1 - . ID=CGI_10015114; scaffold578 GLEAN promoter 142599 143598 1 - . ID=CGI_10015114; scaffold578 GLEAN mRNA 143514 166903 0.893218 - . ID=CGI_10015115; scaffold578 TRF Tandem_Repeat 154967 155029 126 + . . scaffold578 GLEAN promoter 162632 163631 0.698081 + . ID=CGI_10015116; scaffold578 GLEAN mRNA 163632 185798 0.698081 + . ID=CGI_10015116; scaffold578 TRF Tandem_Repeat 164664 164761 67 + . . scaffold578 TRF Tandem_Repeat 164721 164764 52 + . . scaffold578 GLEAN promoter 166904 167903 0.893218 - . ID=CGI_10015115; scaffold578 TRF Tandem_Repeat 168469 168499 62 + . . scaffold578 GLEAN mRNA 188869 191488 1 - . ID=CGI_10015117; scaffold578 GLEAN promoter 190896 191895 1 + . ID=CGI_10015118; scaffold578 GLEAN promoter 191489 192488 1 - . ID=CGI_10015117; scaffold578 GLEAN mRNA 191896 205177 1 + . ID=CGI_10015118; scaffold578 GLEAN mRNA 207120 211600 0.799906 - . ID=CGI_10015119; scaffold578 GLEAN promoter 211601 212600 0.799906 - . ID=CGI_10015119; scaffold578 GLEAN mRNA 216810 218048 0.999371 - . ID=CGI_10015120; scaffold578 GLEAN promoter 218049 219048 0.999371 - . ID=CGI_10015120; scaffold578 GLEAN mRNA 219133 234193 0.999668 - . ID=CGI_10015121; scaffold578 GLEAN promoter 234194 235193 0.999668 - . ID=CGI_10015121; scaffold578 GLEAN mRNA 234785 238523 0.684762 - . ID=CGI_10015122; scaffold578 TRF Tandem_Repeat 235153 235729 766 + . . scaffold578 GLEAN promoter 238524 239523 0.684762 - . ID=CGI_10015122; scaffold578 TRF Tandem_Repeat 244621 244663 86 + . . scaffold578 TRF Tandem_Repeat 247682 247723 75 + . . scaffold578 GLEAN promoter 260737 261736 0.232384 + . ID=CGI_10015123; scaffold578 GLEAN mRNA 261737 263372 0.232384 + . ID=CGI_10015123; scaffold578 TRF Tandem_Repeat 265438 265552 72 + . . scaffold578 TRF Tandem_Repeat 268201 268326 62 + . . scaffold578 TRF Tandem_Repeat 270502 270636 80 + . . scaffold578 TRF Tandem_Repeat 277085 277116 64 + . . scaffold578 GLEAN mRNA 278033 296349 0.806482 - . ID=CGI_10015124; scaffold578 TRF Tandem_Repeat 278691 278875 194 + . . scaffold578 TRF Tandem_Repeat 292941 293107 253 + . . scaffold578 GLEAN promoter 296350 297349 0.806482 - . ID=CGI_10015124; scaffold578 GLEAN promoter 297155 298154 0.843982 + . ID=CGI_10015125; scaffold578 TRF Tandem_Repeat 297398 297464 134 + . . scaffold578 GLEAN mRNA 298155 302214 0.843982 + . ID=CGI_10015125; scaffold578 GLEAN mRNA 305695 311309 1 - . ID=CGI_10015126; scaffold578 GLEAN promoter 307413 308412 0.999113 + . ID=CGI_10015127; scaffold578 GLEAN mRNA 308413 317785 0.999113 + . ID=CGI_10015127; scaffold578 TRF Tandem_Repeat 309617 309659 86 + . . scaffold578 GLEAN promoter 311310 312309 1 - . ID=CGI_10015126; scaffold578 WUBlastX DNA_PiggyBac 318004 319614 885 + . . scaffold578 GLEAN promoter 318732 319731 0.525927 + . ID=CGI_10015128; scaffold578 GLEAN mRNA 319732 333068 0.525927 + . ID=CGI_10015128; scaffold578 GLEAN mRNA 339528 348737 0.999218 - . ID=CGI_10015129; scaffold578 WUBlastX DNA_TcMar-Tc1 340163 340585 111 + . . scaffold578 WUBlastX DNA_TcMar-Tc1 340464 341045 248 + . . scaffold578 WUBlastX DNA_TcMar-Tc1 340584 341171 264 + . . scaffold578 GLEAN promoter 347664 348663 0.458006 + . ID=CGI_10015130; scaffold578 GLEAN mRNA 348664 361929 0.458006 + . ID=CGI_10015130; scaffold578 GLEAN promoter 348738 349737 0.999218 - . ID=CGI_10015129; scaffold578 WUBlastX LINE_RTE-X 349831 350235 134 + . . scaffold578 WUBlastX LINE_RTE-X 355807 356352 24 + . . scaffold578 WUBlastX LINE_RTE-X 355857 355988 54 + . . scaffold578 WUBlastX LINE_RTE-X 356348 356506 49 + . . scaffold578 WUBlastX LINE_RTE-X 356363 356590 25 + . . scaffold578 WUBlastX LINE_RTE-X 357002 357340 130 + . . scaffold578 WUBlastX LINE_RTE-X 357035 357307 146 + . . scaffold578 TRF Tandem_Repeat 357358 357411 90 + . . scaffold578 WUBlastX LINE_RTE-X 357827 358039 90 + . . scaffold578 WUBlastX LTR_DIRS 358034 358834 296 - . . scaffold578 GLEAN mRNA 359678 363807 0.686596 - . ID=CGI_10015131; scaffold578 GLEAN promoter 363808 364807 0.686596 - . ID=CGI_10015131; scaffold578 WUBlastX DNA_TcMar-Marin 368631 368837 39 - . . scaffold578 WUBlastX DNA_TcMar-Marin 369053 369187 21 - . . scaffold578 GLEAN mRNA 369270 377780 0.999994 - . ID=CGI_10015132; scaffold578 TRF Tandem_Repeat 369873 369898 52 + . . scaffold578 GLEAN promoter 377781 378780 0.999994 - . ID=CGI_10015132; scaffold578 TRF Tandem_Repeat 380890 381292 590 + . . scaffold578 WUBlastX LTR_Ngaro 381351 381872 140 + . . scaffold578 WUBlastX LTR_Ngaro 381396 381995 92 + . . scaffold578 WUBlastX LTR_Ngaro 382109 382609 357 + . . scaffold578 WUBlastX LTR_Ngaro 382615 382887 108 + . . scaffold578 WUBlastX LTR_Ngaro 382894 383430 224 + . . scaffold578 GLEAN mRNA 389224 398020 0.999998 - . ID=CGI_10015133; scaffold578 GLEAN promoter 398021 399020 0.999998 - . ID=CGI_10015133; scaffold578 GLEAN mRNA 400277 402178 0.999797 - . ID=CGI_10015134; scaffold578 GLEAN promoter 402179 403178 0.999797 - . ID=CGI_10015134; scaffold578 GLEAN mRNA 405445 410168 0.999796 - . ID=CGI_10015135; scaffold578 GLEAN promoter 410169 411168 0.999796 - . ID=CGI_10015135; scaffold578 TRF Tandem_Repeat 412986 413031 58 + . . scaffold578 TRF Tandem_Repeat 414970 415008 78 + . . scaffold578 TRF Tandem_Repeat 415788 415849 124 + . . scaffold578 TRF Tandem_Repeat 416160 416195 63 + . . scaffold579 GLEAN promoter 2239 3238 0.999999 + . ID=CGI_10011255; scaffold579 GLEAN mRNA 3239 16290 0.999999 + . ID=CGI_10011255; scaffold579 TRF Tandem_Repeat 4156 4224 138 + . . scaffold579 TRF Tandem_Repeat 6477 6614 188 + . . scaffold579 TRF Tandem_Repeat 12437 12466 60 + . . scaffold579 TRF Tandem_Repeat 14094 14145 104 + . . scaffold579 GLEAN mRNA 24901 51322 0.830976 - . ID=CGI_10011256; scaffold579 TRF Tandem_Repeat 32853 33087 416 + . . scaffold579 TRF Tandem_Repeat 33265 33434 295 + . . scaffold579 TRF Tandem_Repeat 46252 46289 76 + . . scaffold579 TRF Tandem_Repeat 46360 46403 88 + . . scaffold579 TRF Tandem_Repeat 47869 48309 864 + . . scaffold579 TRF Tandem_Repeat 48283 48488 367 + . . scaffold579 TRF Tandem_Repeat 50460 50529 122 + . . scaffold579 GLEAN promoter 51323 52322 0.830976 - . ID=CGI_10011256; scaffold579 GLEAN mRNA 52108 60730 0.98713 - . ID=CGI_10011257; scaffold579 TRF Tandem_Repeat 54108 54382 191 + . . scaffold579 TRF Tandem_Repeat 54108 54360 240 + . . scaffold579 TRF Tandem_Repeat 54110 54366 171 + . . scaffold579 TRF Tandem_Repeat 57197 57310 72 + . . scaffold579 TRF Tandem_Repeat 57419 57466 52 + . . scaffold579 TRF Tandem_Repeat 59893 59964 67 + . . scaffold579 GLEAN promoter 60731 61730 0.98713 - . ID=CGI_10011257; scaffold579 GLEAN mRNA 66432 66635 0.617967 - . ID=CGI_10011258; scaffold579 GLEAN promoter 66636 67635 0.617967 - . ID=CGI_10011258; scaffold579 TRF Tandem_Repeat 69876 69953 124 + . . scaffold579 GLEAN promoter 71020 72019 0.850843 + . ID=CGI_10011259; scaffold579 GLEAN mRNA 72020 73434 0.850843 + . ID=CGI_10011259; scaffold579 TRF Tandem_Repeat 73639 73849 341 + . . scaffold579 GLEAN mRNA 74827 78935 0.999224 - . ID=CGI_10011260; scaffold579 WUBlastX DNA_MuDR 76520 77752 125 - . . scaffold579 GLEAN promoter 78936 79935 0.999224 - . ID=CGI_10011260; scaffold579 TRF Tandem_Repeat 82913 83510 809 + . . scaffold579 TRF Tandem_Repeat 85632 85661 60 + . . scaffold579 TRF Tandem_Repeat 88911 89006 93 + . . scaffold579 TRF Tandem_Repeat 93581 93805 436 + . . scaffold579 GLEAN mRNA 97035 106580 0.999673 - . ID=CGI_10011261; scaffold579 TRF Tandem_Repeat 100675 100830 127 + . . scaffold579 GLEAN promoter 106581 107580 0.999673 - . ID=CGI_10011261; scaffold579 TRF Tandem_Repeat 109205 109379 210 + . . scaffold579 TRF Tandem_Repeat 114194 114247 74 + . . scaffold579 TRF Tandem_Repeat 114494 114543 91 + . . scaffold579 WUBlastX LINE_L1 126673 127137 111 + . . scaffold579 WUBlastX LTR_Gypsy 127616 127711 22 - . . scaffold579 WUBlastX LTR_Gypsy 128067 129401 136 - . . scaffold579 WUBlastX LTR_Gypsy 128292 129866 1128 - . . scaffold579 WUBlastX LTR_Gypsy 129841 132294 1698 - . . scaffold579 TRF Tandem_Repeat 135332 135391 120 + . . scaffold579 GLEAN mRNA 188639 190885 0.55669 - . ID=CGI_10011262; scaffold579 TRF Tandem_Repeat 189547 189738 275 + . . scaffold579 GLEAN promoter 190671 191670 1 + . ID=CGI_10011263; scaffold579 GLEAN promoter 190886 191885 0.55669 - . ID=CGI_10011262; scaffold579 GLEAN mRNA 191671 192787 1 + . ID=CGI_10011263; scaffold579 GLEAN promoter 192436 193435 0.863149 + . ID=CGI_10011264; scaffold579 TRF Tandem_Repeat 192799 192910 208 + . . scaffold579 GLEAN mRNA 193436 221323 0.863149 + . ID=CGI_10011264; scaffold579 TRF Tandem_Repeat 194136 194186 95 + . . scaffold579 WUBlastX DNA_TcMar-Tc1 205917 206075 31 + . . scaffold579 WUBlastX DNA_TcMar-Tc1 206870 206935 33 + . . scaffold579 WUBlastX DNA_TcMar-Tc1 206964 207149 36 + . . scaffold579 WUBlastX DNA_TcMar-Tc1 207172 207456 67 + . . scaffold579 WUBlastX DNA_TcMar-Tc1 207241 207477 87 + . . scaffold579 WUBlastX DNA_TcMar-Tc1 207241 207567 52 + . . scaffold579 WUBlastX LTR_Pao 213821 214180 38 + . . scaffold579 WUBlastX LTR_Pao 213878 214195 44 + . . scaffold579 WUBlastX LTR_Pao 213929 214195 109 + . . scaffold579 WUBlastX LTR_Pao 214197 215270 164 + . . scaffold579 WUBlastX LTR_Pao 214779 215618 346 + . . scaffold579 WUBlastX LTR_Pao 215252 215758 28 + . . scaffold579 WUBlastX LTR_Pao 215621 215674 43 + . . scaffold579 WUBlastX LINE_Penelope 216759 217058 155 - . . scaffold579 WUBlastX LINE_Penelope 216789 217115 29 - . . scaffold579 TRF Tandem_Repeat 217827 217883 57 + . . scaffold579 TRF Tandem_Repeat 222163 222201 78 + . . scaffold579 WUBlastX DNA_Harbinger 224001 224240 54 + . . scaffold579 WUBlastX DNA_Harbinger 224049 224270 92 + . . scaffold579 TRF Tandem_Repeat 224473 224498 52 + . . scaffold579 TRF Tandem_Repeat 224689 224751 126 + . . scaffold579 TRF Tandem_Repeat 230953 231348 118 + . . scaffold579 TRF Tandem_Repeat 231055 231340 179 + . . scaffold579 TRF Tandem_Repeat 231179 231321 122 + . . scaffold579 TRF Tandem_Repeat 231353 231526 116 + . . scaffold579 GLEAN promoter 238190 239189 0.99818 + . ID=CGI_10011265; scaffold579 WUBlastX DNA_hAT 238494 239165 95 + . . scaffold579 GLEAN mRNA 239190 240467 0.99818 + . ID=CGI_10011265; scaffold579 WUBlastX DNA_Harbinger 244147 244359 91 - . . scaffold579 TRF Tandem_Repeat 245693 245725 66 + . . scaffold579 GLEAN mRNA 246099 248617 0.999371 - . ID=CGI_10011266; scaffold579 GLEAN promoter 248618 249617 0.999371 - . ID=CGI_10011266; scaffold579 GLEAN mRNA 251968 263366 0.843137 - . ID=CGI_10011267; scaffold579 TRF Tandem_Repeat 261068 261097 60 + . . scaffold579 GLEAN promoter 262302 263301 0.988891 + . ID=CGI_10011268; scaffold579 GLEAN mRNA 263302 283849 0.988891 + . ID=CGI_10011268; scaffold579 GLEAN promoter 263367 264366 0.843137 - . ID=CGI_10011267; scaffold579 TRF Tandem_Repeat 264650 264675 52 + . . scaffold579 WUBlastX LINE_RTE-BovB 267213 267287 28 + . . scaffold579 WUBlastX LINE_RTE-BovB 267245 267526 83 + . . scaffold579 WUBlastX LINE_RTE-BovB 267248 267583 26 + . . scaffold579 WUBlastX LINE_RTE-BovB 267251 267442 93 + . . scaffold579 WUBlastX LINE_RTE-BovB 267281 267442 95 + . . scaffold579 WUBlastX LINE_RTE-BovB 268089 268334 74 + . . scaffold579 WUBlastX LINE_RTE-BovB 268182 268334 131 + . . scaffold579 WUBlastX LINE_RTE-BovB 268333 268611 202 + . . scaffold579 WUBlastX LINE_RTE-BovB 268604 269386 186 + . . scaffold579 TRF Tandem_Repeat 269711 269740 60 + . . scaffold579 TRF Tandem_Repeat 275341 275391 93 + . . scaffold579 TRF Tandem_Repeat 277878 277944 55 + . . scaffold579 TRF Tandem_Repeat 278573 278618 74 + . . scaffold579 TRF Tandem_Repeat 280185 280215 53 + . . scaffold58 GLEAN mRNA 17698 23184 0.651135 - . ID=CGI_10023128; scaffold58 GLEAN promoter 23185 24184 0.651135 - . ID=CGI_10023128; scaffold58 TRF Tandem_Repeat 25829 25881 106 + . . scaffold58 TRF Tandem_Repeat 27113 27201 58 + . . scaffold58 TRF Tandem_Repeat 27113 27162 59 + . . scaffold58 TRF Tandem_Repeat 27119 27203 50 + . . scaffold58 GLEAN mRNA 27366 37042 1 - . ID=CGI_10023129; scaffold58 TRF Tandem_Repeat 29017 29055 78 + . . scaffold58 TRF Tandem_Repeat 29577 29630 108 + . . scaffold58 TRF Tandem_Repeat 29917 29946 60 + . . scaffold58 WUBlastX LINE_L2 31067 31948 332 + . . scaffold58 TRF Tandem_Repeat 33958 33992 52 + . . scaffold58 TRF Tandem_Repeat 34466 34528 117 + . . scaffold58 TRF Tandem_Repeat 35285 35329 90 + . . scaffold58 GLEAN promoter 37043 38042 1 - . ID=CGI_10023129; scaffold58 GLEAN mRNA 46790 54129 0.999415 - . ID=CGI_10023130; scaffold58 TRF Tandem_Repeat 52358 52435 140 + . . scaffold58 GLEAN promoter 54130 55129 0.999415 - . ID=CGI_10023130; scaffold58 GLEAN promoter 62998 63997 0.999949 + . ID=CGI_10023131; scaffold58 GLEAN mRNA 63998 66419 0.999949 + . ID=CGI_10023131; scaffold58 TRF Tandem_Repeat 72530 73258 957 + . . scaffold58 TRF Tandem_Repeat 78071 78095 50 + . . scaffold58 TRF Tandem_Repeat 79161 79699 817 + . . scaffold58 TRF Tandem_Repeat 79307 79408 57 + . . scaffold58 TRF Tandem_Repeat 79700 79967 385 + . . scaffold58 TRF Tandem_Repeat 79723 79822 53 + . . scaffold58 GLEAN promoter 81109 82108 0.999948 + . ID=CGI_10023132; scaffold58 TRF Tandem_Repeat 81440 81482 54 + . . scaffold58 GLEAN mRNA 82109 85106 0.999948 + . ID=CGI_10023132; scaffold58 GLEAN mRNA 89842 91069 0.999676 - . ID=CGI_10023133; scaffold58 GLEAN promoter 90200 91199 0.994526 + . ID=CGI_10023134; scaffold58 GLEAN promoter 91070 92069 0.999676 - . ID=CGI_10023133; scaffold58 GLEAN mRNA 91200 96505 0.994526 + . ID=CGI_10023134; scaffold58 WUBlastX LINE_L2 103363 103482 21 + . . scaffold58 WUBlastX LINE_CR1-L2 103926 104027 55 + . . scaffold58 WUBlastX LINE_CR1-L2 104068 104169 34 + . . scaffold58 GLEAN promoter 105964 106963 0.972104 + . ID=CGI_10023135; scaffold58 GLEAN mRNA 106964 121237 0.972104 + . ID=CGI_10023135; scaffold58 WUBlastX LTR_Ngaro 124862 125221 65 - . . scaffold58 WUBlastX LTR_Ngaro 125382 125606 70 - . . scaffold58 WUBlastX LINE_Jockey 126127 126339 28 - . . scaffold58 WUBlastX LINE_R1 126259 126336 30 - . . scaffold58 WUBlastX LINE_CR1-L2 126273 127211 218 - . . scaffold58 WUBlastX LINE_L2 126426 127274 420 - . . scaffold58 WUBlastX LINE_L2 127298 128113 427 - . . scaffold58 WUBlastX LINE_Jockey 127301 128281 89 - . . scaffold58 WUBlastX LINE_CR1 128558 128746 56 - . . scaffold58 WUBlastX LINE_CR1 128738 129019 74 - . . scaffold58 WUBlastX LINE_CR1 128792 129091 69 - . . scaffold58 WUBlastX LINE_CR1 128807 129019 105 - . . scaffold58 WUBlastX LINE_CR1 129848 130066 25 - . . scaffold58 TRF Tandem_Repeat 134981 135042 54 + . . scaffold58 GLEAN promoter 135138 136137 0.0334817 + . ID=CGI_10023136; scaffold58 GLEAN mRNA 136138 172120 0.0334817 + . ID=CGI_10023136; scaffold58 TRF Tandem_Repeat 162287 162326 80 + . . scaffold58 TRF Tandem_Repeat 177461 177507 58 + . . scaffold58 TRF Tandem_Repeat 188640 188698 118 + . . scaffold58 GLEAN mRNA 194326 194892 0.999807 - . ID=CGI_10023137; scaffold58 GLEAN promoter 194893 195892 0.999807 - . ID=CGI_10023137; scaffold58 GLEAN mRNA 197167 198114 0.542061 - . ID=CGI_10023138; scaffold58 GLEAN promoter 198115 199114 0.542061 - . ID=CGI_10023138; scaffold58 TRF Tandem_Repeat 208035 208070 72 + . . scaffold58 WUBlastX DNA_TcMar-Tc1 210851 211141 72 - . . scaffold58 WUBlastX DNA_TcMar-Tc1 211204 211350 20 - . . scaffold58 TRF Tandem_Repeat 211906 211950 72 + . . scaffold58 TRF Tandem_Repeat 228076 229747 1557 + . . scaffold58 TRF Tandem_Repeat 234968 234996 51 + . . scaffold58 TRF Tandem_Repeat 247954 248156 232 + . . scaffold58 TRF Tandem_Repeat 247961 248156 270 + . . scaffold58 WUBlastX LTR_Gypsy 256440 258368 1255 - . . scaffold58 WUBlastX LTR_Gypsy 258371 259030 630 - . . scaffold58 WUBlastX LTR_Gypsy 258997 260058 367 - . . scaffold58 WUBlastX LTR_Gypsy 260098 260193 61 - . . scaffold58 TRF Tandem_Repeat 261351 261387 65 + . . scaffold58 WUBlastX LTR_Gypsy 263494 264099 20 + . . scaffold58 WUBlastX LTR_Gypsy 263803 264162 89 + . . scaffold58 WUBlastX LTR_Gypsy 264382 264534 20 + . . scaffold58 WUBlastX LTR_Gypsy 264479 264799 22 + . . scaffold58 WUBlastX LTR_Gypsy 264563 264733 22 + . . scaffold58 WUBlastX LTR_Gypsy 264596 265042 63 + . . scaffold58 WUBlastX LTR_Gypsy-Cigr 264665 265783 271 + . . scaffold58 WUBlastX LTR_Gypsy 264950 265783 275 + . . scaffold58 WUBlastX LTR_Gypsy 265752 266543 361 + . . scaffold58 WUBlastX LTR_Gypsy 266542 266811 181 + . . scaffold58 WUBlastX LTR_Gypsy 266675 267898 200 + . . scaffold58 WUBlastX LTR_Gypsy-Cigr 266930 267889 358 + . . scaffold58 WUBlastX LTR_Gypsy-Cigr 267041 268642 301 + . . scaffold58 WUBlastX LTR_Gypsy 267113 267907 488 + . . scaffold58 GLEAN mRNA 290819 304828 0.883263 - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 293190 293508 329 + . . scaffold58 TRF Tandem_Repeat 296545 296589 63 + . . scaffold58 TRF Tandem_Repeat 301836 301872 65 + . . scaffold58 TRF Tandem_Repeat 302436 302579 209 + . . scaffold58 GLEAN promoter 302788 303787 0.499995 + . ID=CGI_10023140; scaffold58 TRF Tandem_Repeat 302928 303016 81 + . . scaffold58 GLEAN mRNA 303788 304111 0.499995 + . ID=CGI_10023140; scaffold58 GLEAN promoter 304829 305828 0.883263 - . ID=CGI_10023139; scaffold58 TRF Tandem_Repeat 305132 305236 74 + . . scaffold58 TRF Tandem_Repeat 305137 305236 91 + . . scaffold58 TRF Tandem_Repeat 311303 311564 296 + . . scaffold58 TRF Tandem_Repeat 311312 311521 248 + . . scaffold58 TRF Tandem_Repeat 311312 311589 198 + . . scaffold58 TRF Tandem_Repeat 313871 313895 50 + . . scaffold58 GLEAN mRNA 314157 322474 0.993467 - . ID=CGI_10023141; scaffold58 TRF Tandem_Repeat 318627 318746 231 + . . scaffold58 GLEAN promoter 322475 323474 0.993467 - . ID=CGI_10023141; scaffold58 WUBlastX LINE_Jockey 325655 325702 26 + . . scaffold58 WUBlastX LINE_CR1-L2 325698 325769 34 + . . scaffold58 WUBlastX LINE_L2 325777 325944 74 + . . scaffold58 WUBlastX LINE_L2 325828 326529 218 + . . scaffold58 WUBlastX LINE_CR1-L2 325828 326742 110 + . . scaffold58 TRF Tandem_Repeat 331808 331858 102 + . . scaffold58 TRF Tandem_Repeat 332954 332985 64 + . . scaffold58 TRF Tandem_Repeat 333764 333901 188 + . . scaffold58 WUBlastX LINE_L1-Tx1 335000 335296 49 - . . scaffold58 GLEAN mRNA 338612 357778 0.55408 - . ID=CGI_10023142; scaffold58 TRF Tandem_Repeat 341643 341727 143 + . . scaffold58 TRF Tandem_Repeat 341649 341736 86 + . . scaffold58 TRF Tandem_Repeat 346190 346367 320 + . . scaffold58 TRF Tandem_Repeat 347178 347240 126 + . . scaffold58 TRF Tandem_Repeat 350169 350224 105 + . . scaffold58 GLEAN promoter 357779 358778 0.55408 - . ID=CGI_10023142; scaffold58 TRF Tandem_Repeat 357781 358049 344 + . . scaffold58 TRF Tandem_Repeat 361796 361834 78 + . . scaffold58 WUBlastX LINE_L2 364046 364504 92 - . . scaffold58 TRF Tandem_Repeat 366868 366993 144 + . . scaffold58 TRF Tandem_Repeat 366868 366993 126 + . . scaffold58 TRF Tandem_Repeat 374509 374537 58 + . . scaffold58 TRF Tandem_Repeat 387602 387644 77 + . . scaffold58 WUBlastX LTR_Pao 388282 388434 37 - . . scaffold58 WUBlastX LTR_Pao 388306 388497 23 - . . scaffold58 WUBlastX LTR_Pao 388586 388774 30 - . . scaffold58 WUBlastX LTR_Pao 388649 388759 73 - . . scaffold58 WUBlastX LTR_Pao 388707 389255 132 - . . scaffold58 WUBlastX LTR_Pao 388764 389342 93 - . . scaffold58 WUBlastX LTR_Pao 388767 389228 262 - . . scaffold58 WUBlastX LTR_Pao 389396 389629 31 - . . scaffold58 WUBlastX DNA_IS4EU 395057 395431 43 + . . scaffold58 GLEAN mRNA 395705 399423 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX DNA_IS4EU 395853 396140 42 + . . scaffold58 WUBlastX DNA_IS4EU 396268 396789 174 + . . scaffold58 WUBlastX DNA_IS4EU 396918 397139 139 - . . scaffold58 WUBlastX DNA_IS4EU 397357 398028 395 - . . scaffold58 WUBlastX DNA_Kolobok-IS4 398241 398468 27 - . . scaffold58 WUBlastX DNA_IS4EU 398295 398429 45 - . . scaffold58 WUBlastX DNA_IS4EU 399112 399423 51 - . . scaffold58 GLEAN promoter 399424 400423 0.999985 - . ID=CGI_10023143; scaffold58 WUBlastX LINE_L1-Tx1 400233 400490 66 - . . scaffold58 WUBlastX LINE_L1-Tx1 400499 400642 75 - . . scaffold58 WUBlastX LINE_L1-Tx1 400992 401264 78 - . . scaffold58 WUBlastX LINE_L1 401013 401231 79 - . . scaffold58 WUBlastX LINE_L1-Tx1 401444 401560 25 - . . scaffold58 WUBlastX LINE_L1-Tx1 401550 401744 44 - . . scaffold58 WUBlastX LINE_L1-Tx1 413871 414173 42 + . . scaffold58 WUBlastX LINE_L1-Tx1 413925 414158 113 + . . scaffold58 WUBlastX LINE_L1-Tx1 414133 415992 1189 + . . scaffold58 WUBlastX LINE_L1-Tx1 415991 416956 342 + . . scaffold58 WUBlastX LINE_L1-Tx1 417159 417641 61 + . . scaffold58 TRF Tandem_Repeat 420991 421043 106 + . . scaffold58 WUBlastX DNA_TcMar-Fot1 427030 427929 109 + . . scaffold58 WUBlastX LTR_DIRS 428012 428557 158 - . . scaffold58 WUBlastX LTR_DIRS 428114 428554 213 - . . scaffold58 WUBlastX DNA_TcMar-Fot1 433224 434105 155 + . . scaffold58 WUBlastX DNA_TcMar-Fot1 434116 434271 39 + . . scaffold58 TRF Tandem_Repeat 437772 437821 100 + . . scaffold58 TRF Tandem_Repeat 445699 445785 93 + . . scaffold58 TRF Tandem_Repeat 445699 445782 105 + . . scaffold58 TRF Tandem_Repeat 445700 445754 56 + . . scaffold58 TRF Tandem_Repeat 445720 445785 114 + . . scaffold58 TRF Tandem_Repeat 446468 446511 88 + . . scaffold58 GLEAN mRNA 449220 456173 0.999675 - . ID=CGI_10023144; scaffold58 GLEAN promoter 456174 457173 0.999675 - . ID=CGI_10023144; scaffold58 GLEAN mRNA 456330 469512 0.944736 - . ID=CGI_10023145; scaffold58 TRF Tandem_Repeat 457890 458074 273 + . . scaffold58 TRF Tandem_Repeat 457890 458074 193 + . . scaffold58 WUBlastX DNA_Crypton 460125 460685 98 - . . scaffold58 WUBlastX DNA_Crypton 460840 461019 78 - . . scaffold58 WUBlastX DNA_Crypton 460882 461451 251 - . . scaffold58 TRF Tandem_Repeat 461639 461708 70 + . . scaffold58 TRF Tandem_Repeat 462225 462267 86 + . . scaffold58 TRF Tandem_Repeat 466355 466404 100 + . . scaffold58 TRF Tandem_Repeat 467450 467495 58 + . . scaffold58 TRF Tandem_Repeat 468648 468694 94 + . . scaffold58 GLEAN promoter 469513 470512 0.944736 - . ID=CGI_10023145; scaffold58 WUBlastX LINE_RTE-X 476386 476916 113 - . . scaffold58 WUBlastX LINE_RTE-X 476503 476916 130 - . . scaffold58 WUBlastX LINE_RTE-X 480358 480990 59 - . . scaffold58 WUBlastX LINE_RTE-X 480364 480768 83 - . . scaffold58 WUBlastX LINE_RTE-X 480367 480885 61 - . . scaffold58 WUBlastX LINE_RTE-X 481178 481312 21 - . . scaffold58 TRF Tandem_Repeat 493231 493293 55 + . . scaffold58 TRF Tandem_Repeat 493234 493284 61 + . . scaffold58 TRF Tandem_Repeat 493234 493287 74 + . . scaffold58 GLEAN mRNA 496587 497324 0.824441 - . ID=CGI_10023146; scaffold58 GLEAN promoter 497325 498324 0.824441 - . ID=CGI_10023146; scaffold58 TRF Tandem_Repeat 500848 500936 81 + . . scaffold58 TRF Tandem_Repeat 500848 500939 77 + . . scaffold58 TRF Tandem_Repeat 501037 501063 54 + . . scaffold58 GLEAN promoter 502173 503172 0.999756 + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 502866 502907 66 + . . scaffold58 TRF Tandem_Repeat 502979 503022 88 + . . scaffold58 GLEAN mRNA 503173 515645 0.999756 + . ID=CGI_10023147; scaffold58 TRF Tandem_Repeat 508763 508881 75 + . . scaffold58 TRF Tandem_Repeat 513293 513707 310 + . . scaffold58 TRF Tandem_Repeat 513470 513713 260 + . . scaffold58 TRF Tandem_Repeat 513737 513773 74 + . . scaffold58 TRF Tandem_Repeat 514832 515127 336 + . . scaffold58 TRF Tandem_Repeat 514832 515127 269 + . . scaffold58 GLEAN mRNA 517451 527850 1 - . ID=CGI_10023148; scaffold58 WUBlastX DNA_hAT-Blackja 519936 520130 58 - . . scaffold58 TRF Tandem_Repeat 520562 520837 353 + . . scaffold58 GLEAN promoter 523507 524506 0.321775 + . ID=CGI_10023149; scaffold58 GLEAN mRNA 524507 531176 0.321775 + . ID=CGI_10023149; scaffold58 GLEAN promoter 527851 528850 1 - . ID=CGI_10023148; scaffold58 GLEAN promoter 530767 531766 0.304397 + . ID=CGI_10023150; scaffold58 TRF Tandem_Repeat 531430 531483 63 + . . scaffold58 GLEAN mRNA 531767 534592 0.304397 + . ID=CGI_10023150; scaffold58 WUBlastX LINE_L1 539689 539952 26 - . . scaffold58 WUBlastX LINE_L1-Tx1 539793 540023 69 - . . scaffold58 WUBlastX LINE_L1 540023 540217 43 - . . scaffold58 WUBlastX LINE_L1-Tx1 540023 540187 82 - . . scaffold58 TRF Tandem_Repeat 542741 542782 59 + . . scaffold58 WUBlastX LINE_L1-Tx1 542864 543163 74 - . . scaffold58 WUBlastX LINE_L1-Tx1 543443 543556 30 - . . scaffold58 WUBlastX LINE_L1-Tx1 543567 543662 41 - . . scaffold58 WUBlastX DNA_hAT-Ac 544181 544282 42 - . . scaffold58 WUBlastX DNA_hAT-Ac 544405 544539 49 - . . scaffold58 WUBlastX LTR_Pao 544610 544690 36 + . . scaffold58 WUBlastX LTR_Pao 544699 544854 85 + . . scaffold58 WUBlastX LTR_Pao 544962 545255 106 + . . scaffold58 WUBlastX LTR_Pao 545022 545258 118 + . . scaffold58 WUBlastX LTR_Pao 545022 545309 115 + . . scaffold58 WUBlastX LTR_Pao 545267 545380 58 + . . scaffold58 WUBlastX LTR_Pao 545467 545646 82 + . . scaffold58 TRF Tandem_Repeat 549137 549233 73 + . . scaffold58 TRF Tandem_Repeat 550234 550271 76 + . . scaffold58 GLEAN promoter 550443 551442 0.584001 + . ID=CGI_10023151; scaffold58 TRF Tandem_Repeat 550459 550740 241 + . . scaffold58 WUBlastX DNA_Kolobok-IS4 550932 551504 38 - . . scaffold58 WUBlastX DNA_IS4EU 550977 551453 45 - . . scaffold58 GLEAN mRNA 551443 572039 0.584001 + . ID=CGI_10023151; scaffold58 WUBlastX DNA_Sola 551836 552198 55 + . . scaffold58 TRF Tandem_Repeat 553024 553050 54 + . . scaffold58 TRF Tandem_Repeat 558416 559314 1467 + . . scaffold58 WUBlastX DNA_TcMar-Marin 564678 564866 64 - . . scaffold58 WUBlastX DNA_TcMar-Marin 564723 564866 76 - . . scaffold58 WUBlastX DNA_TcMar-Marin 564756 564896 78 - . . scaffold58 WUBlastX DNA_TcMar-Marin 564765 565154 37 - . . scaffold58 WUBlastX DNA_TcMar-Marin 564768 564881 83 - . . scaffold58 GLEAN mRNA 565797 572122 0.982335 - . ID=CGI_10023152; scaffold58 WUBlastX LTR_Gypsy-Cigr 566947 567576 108 - . . scaffold58 WUBlastX LTR_Gypsy-Cigr 567173 568219 286 - . . scaffold58 WUBlastX LTR_Gypsy 567671 568333 69 - . . scaffold58 WUBlastX LTR_Gypsy 568350 570650 1349 - . . scaffold58 WUBlastX LTR_Gypsy 570333 570746 35 - . . scaffold58 WUBlastX LTR_Gypsy 570806 571636 58 - . . scaffold58 WUBlastX LTR_Gypsy 571010 571918 57 - . . scaffold58 WUBlastX LTR_Gypsy 571115 571660 161 - . . scaffold58 GLEAN promoter 572123 573122 0.982335 - . ID=CGI_10023152; scaffold58 GLEAN mRNA 573281 575408 1 - . ID=CGI_10023153; scaffold58 TRF Tandem_Repeat 573930 573988 109 + . . scaffold58 GLEAN promoter 575409 576408 1 - . ID=CGI_10023153; scaffold58 TRF Tandem_Repeat 576120 577044 1163 + . . scaffold58 TRF Tandem_Repeat 578447 578500 56 + . . scaffold58 TRF Tandem_Repeat 578953 579065 181 + . . scaffold58 GLEAN mRNA 580520 589077 0.597898 - . ID=CGI_10023154; scaffold58 TRF Tandem_Repeat 586208 586296 141 + . . scaffold58 TRF Tandem_Repeat 586208 586296 142 + . . scaffold58 GLEAN promoter 589078 590077 0.597898 - . ID=CGI_10023154; scaffold58 WUBlastX DNA_IS4EU 600428 600553 38 - . . scaffold58 WUBlastX DNA_IS4EU 600648 601043 106 - . . scaffold58 WUBlastX DNA_Kolobok-IS4 600648 601202 96 - . . scaffold58 TRF Tandem_Repeat 604757 606680 1218 + . . scaffold58 TRF Tandem_Repeat 604775 605897 471 + . . scaffold58 TRF Tandem_Repeat 607004 607060 62 + . . scaffold58 TRF Tandem_Repeat 607188 607317 122 + . . scaffold58 TRF Tandem_Repeat 607198 607317 90 + . . scaffold58 TRF Tandem_Repeat 607450 607514 67 + . . scaffold58 TRF Tandem_Repeat 608063 608249 175 + . . scaffold58 TRF Tandem_Repeat 608063 608249 151 + . . scaffold58 TRF Tandem_Repeat 608251 608347 160 + . . scaffold58 TRF Tandem_Repeat 608476 608515 80 + . . scaffold58 TRF Tandem_Repeat 608756 608780 50 + . . scaffold58 TRF Tandem_Repeat 608796 609710 793 + . . scaffold58 TRF Tandem_Repeat 608913 609988 961 + . . scaffold58 TRF Tandem_Repeat 608925 609993 894 + . . scaffold58 TRF Tandem_Repeat 612012 612038 54 + . . scaffold58 TRF Tandem_Repeat 612085 612163 97 + . . scaffold58 TRF Tandem_Repeat 612455 612548 134 + . . scaffold58 WUBlastX LINE_L2 613424 613582 44 - . . scaffold58 WUBlastX LINE_L2 613445 613846 42 - . . scaffold58 WUBlastX LINE_L2 613738 613935 30 - . . scaffold58 WUBlastX LINE_L2 614528 614683 39 - . . scaffold58 WUBlastX LINE_L2 614746 614820 26 - . . scaffold58 WUBlastX LINE_L2 614811 614900 30 - . . scaffold58 WUBlastX LINE_L2 614811 614948 25 - . . scaffold58 WUBlastX LINE_L2 615263 615400 20 - . . scaffold58 WUBlastX LINE_L2 615296 615400 34 - . . scaffold58 WUBlastX LINE_L2 615403 615498 21 - . . scaffold58 WUBlastX LINE_L2 615403 615465 24 - . . scaffold58 TRF Tandem_Repeat 620158 620214 105 + . . scaffold58 GLEAN mRNA 622350 622832 0.997818 - . ID=CGI_10023156; scaffold58 GLEAN promoter 622833 623832 0.997818 - . ID=CGI_10023156; scaffold58 GLEAN mRNA 622859 625878 1 - . ID=CGI_10023157; scaffold58 TRF Tandem_Repeat 625322 625393 90 + . . scaffold58 TRF Tandem_Repeat 625339 625390 77 + . . scaffold58 GLEAN promoter 625879 626878 1 - . ID=CGI_10023157; scaffold58 WUBlastX LTR_Pao 632980 633129 49 - . . scaffold58 WUBlastX LTR_Pao 633129 633209 28 - . . scaffold58 WUBlastX LTR_Pao 633206 633430 86 - . . scaffold58 WUBlastX LTR_Pao 634256 635005 36 - . . scaffold58 WUBlastX LTR_Pao 634604 635005 43 - . . scaffold58 TRF Tandem_Repeat 647088 647245 178 + . . scaffold58 GLEAN mRNA 649484 660392 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 652728 653068 364 + . . scaffold58 TRF Tandem_Repeat 652728 653068 333 + . . scaffold58 TRF Tandem_Repeat 653078 653600 514 + . . scaffold58 TRF Tandem_Repeat 653078 653600 505 + . . scaffold58 TRF Tandem_Repeat 653078 653600 534 + . . scaffold58 TRF Tandem_Repeat 655790 655839 100 + . . scaffold58 TRF Tandem_Repeat 656861 657282 400 + . . scaffold58 TRF Tandem_Repeat 656882 657103 232 + . . scaffold58 TRF Tandem_Repeat 657708 657957 198 + . . scaffold58 GLEAN promoter 660393 661392 0.648545 - . ID=CGI_10023158; scaffold58 TRF Tandem_Repeat 661344 661479 147 + . . scaffold58 TRF Tandem_Repeat 661724 661775 104 + . . scaffold58 TRF Tandem_Repeat 662901 662932 64 + . . scaffold58 TRF Tandem_Repeat 663345 663373 58 + . . scaffold58 TRF Tandem_Repeat 663608 663738 117 + . . scaffold58 TRF Tandem_Repeat 666400 666750 238 + . . scaffold58 TRF Tandem_Repeat 667197 667319 97 + . . scaffold58 TRF Tandem_Repeat 667499 667544 62 + . . scaffold58 GLEAN mRNA 672508 673389 1 - . ID=CGI_10023159; scaffold58 TRF Tandem_Repeat 672649 672827 216 + . . scaffold58 TRF Tandem_Repeat 672670 672827 208 + . . scaffold58 GLEAN promoter 673390 674389 1 - . ID=CGI_10023159; scaffold58 TRF Tandem_Repeat 681556 681851 362 + . . scaffold58 TRF Tandem_Repeat 682124 682791 824 + . . scaffold58 TRF Tandem_Repeat 682124 682791 760 + . . scaffold58 TRF Tandem_Repeat 682137 682810 812 + . . scaffold58 TRF Tandem_Repeat 682149 682791 480 + . . scaffold58 GLEAN mRNA 684680 703148 0.999999 - . ID=CGI_10023160; scaffold58 TRF Tandem_Repeat 691988 692732 971 + . . scaffold58 TRF Tandem_Repeat 697562 698244 1168 + . . scaffold58 TRF Tandem_Repeat 698510 698773 259 + . . scaffold58 GLEAN promoter 703149 704148 0.999999 - . ID=CGI_10023160; scaffold58 TRF Tandem_Repeat 703802 704082 200 + . . scaffold58 TRF Tandem_Repeat 708681 708705 50 + . . scaffold58 GLEAN mRNA 712836 713699 0.836238 - . ID=CGI_10023161; scaffold58 GLEAN promoter 713700 714699 0.836238 - . ID=CGI_10023161; scaffold58 TRF Tandem_Repeat 714586 714639 73 + . . scaffold58 TRF Tandem_Repeat 714590 714639 57 + . . scaffold58 TRF Tandem_Repeat 714596 714635 52 + . . scaffold58 WUBlastX LINE_RTE-X 715451 717127 803 - . . scaffold58 WUBlastX LINE_L2 716222 717289 166 - . . scaffold58 WUBlastX LINE_RTE-X 717126 717569 67 - . . scaffold58 WUBlastX LINE_RTE-X 717147 717479 84 - . . scaffold58 TRF Tandem_Repeat 720280 720337 116 + . . scaffold58 WUBlastX LINE_RTE-X 721117 721431 41 + . . scaffold58 TRF Tandem_Repeat 724256 724521 487 + . . scaffold58 GLEAN promoter 728182 729181 0.472398 + . ID=CGI_10023162; scaffold58 GLEAN mRNA 729182 751705 0.472398 + . ID=CGI_10023162; scaffold58 WUBlastX LINE_L1-Tx1 738412 738615 31 + . . scaffold58 WUBlastX LINE_L1-Tx1 738475 738615 69 + . . scaffold58 WUBlastX LINE_L1-Tx1 738630 738845 31 + . . scaffold58 WUBlastX LINE_L1 738678 738800 34 + . . scaffold58 WUBlastX LINE_L1 738720 738788 38 + . . scaffold58 WUBlastX LINE_L1-Tx1 738782 738991 22 + . . scaffold58 TRF Tandem_Repeat 749690 749770 153 + . . scaffold58 GLEAN promoter 753646 754645 0.99883 + . ID=CGI_10023163; scaffold58 GLEAN mRNA 754646 777437 0.99883 + . ID=CGI_10023163; scaffold58 TRF Tandem_Repeat 755800 757799 1794 + . . scaffold58 TRF Tandem_Repeat 755816 757799 1869 + . . scaffold58 TRF Tandem_Repeat 758641 758693 97 + . . scaffold58 TRF Tandem_Repeat 763665 763745 162 + . . scaffold58 TRF Tandem_Repeat 764852 764897 85 + . . scaffold58 WUBlastX LINE_L2 772887 773156 62 + . . scaffold58 GLEAN mRNA 776038 784085 0.259197 - . ID=CGI_10023164; scaffold58 WUBlastX DNA_P 778454 778639 23 + . . scaffold58 GLEAN promoter 783517 784516 1 + . ID=CGI_10023165; scaffold58 GLEAN promoter 784086 785085 0.259197 - . ID=CGI_10023164; scaffold58 GLEAN mRNA 784517 786916 1 + . ID=CGI_10023165; scaffold58 TRF Tandem_Repeat 784855 784916 70 + . . scaffold58 GLEAN promoter 787809 788808 0.961454 + . ID=CGI_10023166; scaffold58 GLEAN mRNA 788809 814593 0.961454 + . ID=CGI_10023166; scaffold58 TRF Tandem_Repeat 789088 789750 1128 + . . scaffold58 TRF Tandem_Repeat 789757 789791 52 + . . scaffold58 TRF Tandem_Repeat 794204 794950 961 + . . scaffold58 GLEAN mRNA 795491 804728 1 - . ID=CGI_10023167; scaffold58 TRF Tandem_Repeat 795744 795803 113 + . . scaffold58 TRF Tandem_Repeat 801121 801267 258 + . . scaffold58 GLEAN promoter 804729 805728 1 - . ID=CGI_10023167; scaffold58 GLEAN promoter 821947 822946 0.526874 + . ID=CGI_10023168; scaffold58 GLEAN mRNA 822947 823228 0.526874 + . ID=CGI_10023168; scaffold58 TRF Tandem_Repeat 823382 823424 86 + . . scaffold58 TRF Tandem_Repeat 823474 823528 92 + . . scaffold580 TRF Tandem_Repeat 1178 1230 106 + . . scaffold580 WUBlastX LINE_Penelope 2659 3537 402 - . . scaffold580 WUBlastX LINE_Penelope 3469 3804 127 + . . scaffold580 WUBlastX LINE_RTE-X 6308 6685 42 - . . scaffold580 WUBlastX LINE_RTE-X 6443 6886 59 - . . scaffold580 WUBlastX LINE_RTE-X 25156 25260 28 + . . scaffold580 WUBlastX LINE_RTE-X 25871 26269 93 + . . scaffold580 WUBlastX LINE_RTE-X 26036 26398 132 + . . scaffold580 WUBlastX LINE_L1 28643 29308 45 - . . scaffold580 TRF Tandem_Repeat 31304 31433 242 + . . scaffold580 GLEAN mRNA 48460 84975 0.650731 - . ID=CGI_10020485; scaffold580 TRF Tandem_Repeat 58959 59010 95 + . . scaffold580 TRF Tandem_Repeat 65233 65275 50 + . . scaffold580 TRF Tandem_Repeat 69221 69276 76 + . . scaffold580 TRF Tandem_Repeat 69224 69276 88 + . . scaffold580 TRF Tandem_Repeat 70401 70452 104 + . . scaffold580 TRF Tandem_Repeat 77394 77455 115 + . . scaffold580 GLEAN promoter 81260 82259 0.991247 + . ID=CGI_10020486; scaffold580 GLEAN mRNA 82260 84999 0.991247 + . ID=CGI_10020486; scaffold580 GLEAN promoter 84976 85975 0.650731 - . ID=CGI_10020485; scaffold580 GLEAN mRNA 85510 91051 0.999994 - . ID=CGI_10020487; scaffold580 TRF Tandem_Repeat 85963 85999 74 + . . scaffold580 GLEAN promoter 91052 92051 0.999994 - . ID=CGI_10020487; scaffold580 TRF Tandem_Repeat 92560 92614 110 + . . scaffold580 TRF Tandem_Repeat 96224 96394 189 + . . scaffold580 TRF Tandem_Repeat 96393 96580 207 + . . scaffold580 TRF Tandem_Repeat 96463 96580 130 + . . scaffold580 TRF Tandem_Repeat 96657 96743 104 + . . scaffold580 WUBlastX DNA_Harbinger 111821 112108 66 - . . scaffold580 TRF Tandem_Repeat 144122 144224 117 + . . scaffold580 TRF Tandem_Repeat 144129 144224 91 + . . scaffold580 TRF Tandem_Repeat 144129 144224 135 + . . scaffold580 TRF Tandem_Repeat 158668 158740 51 + . . scaffold580 TRF Tandem_Repeat 160083 160137 96 + . . scaffold580 TRF Tandem_Repeat 160205 160252 96 + . . scaffold580 TRF Tandem_Repeat 162144 162362 194 + . . scaffold580 GLEAN promoter 162178 163177 1 + . ID=CGI_10020488; scaffold580 GLEAN mRNA 163178 164164 1 + . ID=CGI_10020488; scaffold580 TRF Tandem_Repeat 166118 166159 75 + . . scaffold580 TRF Tandem_Repeat 167733 167785 106 + . . scaffold580 TRF Tandem_Repeat 181944 182010 120 + . . scaffold580 TRF Tandem_Repeat 184283 184318 72 + . . scaffold580 TRF Tandem_Repeat 184929 184965 65 + . . scaffold580 TRF Tandem_Repeat 185238 185299 124 + . . scaffold580 GLEAN promoter 187826 188825 0.733461 + . ID=CGI_10020489; scaffold580 GLEAN mRNA 188826 189137 0.733461 + . ID=CGI_10020489; scaffold580 TRF Tandem_Repeat 193646 193896 274 + . . scaffold580 TRF Tandem_Repeat 196498 196591 116 + . . scaffold580 TRF Tandem_Repeat 196666 196757 105 + . . scaffold580 TRF Tandem_Repeat 196834 196951 130 + . . scaffold580 TRF Tandem_Repeat 197179 197272 91 + . . scaffold580 TRF Tandem_Repeat 197335 197426 85 + . . scaffold580 TRF Tandem_Repeat 197478 197637 162 + . . scaffold580 TRF Tandem_Repeat 199308 199341 68 + . . scaffold580 TRF Tandem_Repeat 200264 200308 90 + . . scaffold580 TRF Tandem_Repeat 201953 202002 100 + . . scaffold580 TRF Tandem_Repeat 202014 202041 56 + . . scaffold580 GLEAN mRNA 208561 212828 0.999661 - . ID=CGI_10020490; scaffold580 GLEAN promoter 212829 213828 0.999661 - . ID=CGI_10020490; scaffold580 TRF Tandem_Repeat 213804 213872 138 + . . scaffold580 TRF Tandem_Repeat 215929 215981 88 + . . scaffold580 TRF Tandem_Repeat 216658 216710 106 + . . scaffold580 TRF Tandem_Repeat 217167 217216 100 + . . scaffold580 TRF Tandem_Repeat 217911 217947 74 + . . scaffold580 TRF Tandem_Repeat 219314 219365 104 + . . scaffold580 TRF Tandem_Repeat 220816 220852 74 + . . scaffold580 TRF Tandem_Repeat 224514 224549 72 + . . scaffold580 TRF Tandem_Repeat 225259 225301 86 + . . scaffold580 GLEAN promoter 232483 233482 0.999661 + . ID=CGI_10020491; scaffold580 GLEAN mRNA 233483 236782 0.999661 + . ID=CGI_10020491; scaffold580 TRF Tandem_Repeat 237227 237268 84 + . . scaffold580 TRF Tandem_Repeat 239871 239906 72 + . . scaffold580 TRF Tandem_Repeat 240453 240501 98 + . . scaffold580 GLEAN promoter 242987 243986 1 + . ID=CGI_10020492; scaffold580 TRF Tandem_Repeat 243535 243653 107 + . . scaffold580 TRF Tandem_Repeat 243551 243759 122 + . . scaffold580 TRF Tandem_Repeat 243762 243974 219 + . . scaffold580 GLEAN mRNA 243987 245406 1 + . ID=CGI_10020492; scaffold580 TRF Tandem_Repeat 244110 244153 79 + . . scaffold580 GLEAN mRNA 249641 251287 1 - . ID=CGI_10020493; scaffold580 GLEAN promoter 250944 251943 1 + . ID=CGI_10020494; scaffold580 GLEAN promoter 251288 252287 1 - . ID=CGI_10020493; scaffold580 GLEAN mRNA 251944 258646 1 + . ID=CGI_10020494; scaffold580 GLEAN mRNA 263965 268756 0.987793 - . ID=CGI_10020495; scaffold580 GLEAN promoter 268757 269756 0.987793 - . ID=CGI_10020495; scaffold580 TRF Tandem_Repeat 274499 274568 131 + . . scaffold580 TRF Tandem_Repeat 274631 274699 111 + . . scaffold580 TRF Tandem_Repeat 283627 283657 62 + . . scaffold580 TRF Tandem_Repeat 284324 284377 101 + . . scaffold580 GLEAN promoter 288996 289995 0.998445 + . ID=CGI_10020496; scaffold580 TRF Tandem_Repeat 289221 289251 62 + . . scaffold580 GLEAN mRNA 289996 315681 0.998445 + . ID=CGI_10020496; scaffold580 GLEAN mRNA 290704 298407 1 - . ID=CGI_10020497; scaffold580 TRF Tandem_Repeat 290946 291149 273 + . . scaffold580 TRF Tandem_Repeat 292660 292780 107 + . . scaffold580 TRF Tandem_Repeat 292724 293220 363 + . . scaffold580 TRF Tandem_Repeat 292724 293194 371 + . . scaffold580 GLEAN promoter 298408 299407 1 - . ID=CGI_10020497; scaffold580 TRF Tandem_Repeat 299301 299355 110 + . . scaffold580 TRF Tandem_Repeat 301788 301816 58 + . . scaffold580 TRF Tandem_Repeat 313611 314613 1375 + . . scaffold580 TRF Tandem_Repeat 314784 314822 60 + . . scaffold580 GLEAN promoter 318213 319212 0.999103 + . ID=CGI_10020498; scaffold580 GLEAN mRNA 319213 322694 0.999103 + . ID=CGI_10020498; scaffold580 TRF Tandem_Repeat 319615 319661 94 + . . scaffold580 TRF Tandem_Repeat 322040 322085 92 + . . scaffold580 GLEAN promoter 323846 324845 0.999984 + . ID=CGI_10020499; scaffold580 GLEAN mRNA 324846 332326 0.999984 + . ID=CGI_10020499; scaffold580 TRF Tandem_Repeat 329888 329949 124 + . . scaffold580 GLEAN mRNA 336893 348731 0.999415 - . ID=CGI_10020500; scaffold580 TRF Tandem_Repeat 339831 339928 127 + . . scaffold580 TRF Tandem_Repeat 346094 346151 53 + . . scaffold580 TRF Tandem_Repeat 346095 346163 54 + . . scaffold580 TRF Tandem_Repeat 346103 346151 64 + . . scaffold580 GLEAN promoter 348732 349731 0.999415 - . ID=CGI_10020500; scaffold580 TRF Tandem_Repeat 356791 356855 130 + . . scaffold580 GLEAN promoter 377109 378108 0.987884 + . ID=CGI_10020501; scaffold580 GLEAN mRNA 378109 382608 0.987884 + . ID=CGI_10020501; scaffold580 GLEAN mRNA 391195 396116 1 - . ID=CGI_10020502; scaffold580 GLEAN promoter 395234 396233 0.987883 + . ID=CGI_10020503; scaffold580 GLEAN promoter 396117 397116 1 - . ID=CGI_10020502; scaffold580 GLEAN mRNA 396234 406231 0.987883 + . ID=CGI_10020503; scaffold580 GLEAN mRNA 406910 421710 1 - . ID=CGI_10020504; scaffold580 TRF Tandem_Repeat 411121 411491 598 + . . scaffold580 TRF Tandem_Repeat 413518 413774 250 + . . scaffold580 TRF Tandem_Repeat 416425 416481 114 + . . scaffold580 GLEAN promoter 421711 422710 1 - . ID=CGI_10020504; scaffold580 GLEAN mRNA 427190 438163 1 - . ID=CGI_10020505; scaffold580 TRF Tandem_Repeat 428955 429665 723 + . . scaffold580 TRF Tandem_Repeat 430904 430977 141 + . . scaffold580 TRF Tandem_Repeat 433429 433470 59 + . . scaffold580 TRF Tandem_Repeat 435220 436065 1131 + . . scaffold580 GLEAN promoter 438164 439163 1 - . ID=CGI_10020505; scaffold580 GLEAN mRNA 441729 454846 1 - . ID=CGI_10020506; scaffold580 GLEAN promoter 454847 455846 1 - . ID=CGI_10020506; scaffold580 WUBlastX LTR_DIRS 462766 463644 48 - . . scaffold580 WUBlastX LTR_DIRS 462769 463308 136 - . . scaffold580 WUBlastX LTR_DIRS 463629 463994 68 - . . scaffold580 WUBlastX LTR_DIRS 463686 463982 96 - . . scaffold580 WUBlastX LINE_RTE-X 468889 470892 353 - . . scaffold580 WUBlastX LINE_RTE-X 469075 470724 383 - . . scaffold580 WUBlastX LINE_L2 470930 471067 32 - . . scaffold580 TRF Tandem_Repeat 471075 471196 136 + . . scaffold580 TRF Tandem_Repeat 471090 471189 164 + . . scaffold580 GLEAN mRNA 472104 472307 0.999955 - . ID=CGI_10020507; scaffold580 GLEAN promoter 472308 473307 0.999955 - . ID=CGI_10020507; scaffold580 GLEAN promoter 475815 476814 0.996842 + . ID=CGI_10020508; scaffold580 GLEAN mRNA 476815 490601 0.996842 + . ID=CGI_10020508; scaffold580 GLEAN mRNA 483560 484132 0.696243 - . ID=CGI_10020509; scaffold580 GLEAN promoter 484133 485132 0.696243 - . ID=CGI_10020509; scaffold580 GLEAN promoter 492071 493070 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 492721 492778 89 + . . scaffold580 GLEAN mRNA 493004 501173 0.925199 - . ID=CGI_10020510; scaffold580 GLEAN mRNA 493071 515531 1 + . ID=CGI_10020511; scaffold580 TRF Tandem_Repeat 494381 494566 223 + . . scaffold580 TRF Tandem_Repeat 497977 498750 1047 + . . scaffold580 TRF Tandem_Repeat 499046 499431 106 + . . scaffold580 TRF Tandem_Repeat 499242 499396 93 + . . scaffold580 TRF Tandem_Repeat 499243 499419 116 + . . scaffold580 TRF Tandem_Repeat 499285 499433 89 + . . scaffold580 TRF Tandem_Repeat 499294 499367 60 + . . scaffold580 TRF Tandem_Repeat 499298 499366 52 + . . scaffold580 GLEAN promoter 501174 502173 0.925199 - . ID=CGI_10020510; scaffold580 GLEAN mRNA 521622 523304 0.648497 - . ID=CGI_10020512; scaffold580 GLEAN promoter 523305 524304 0.648497 - . ID=CGI_10020512; scaffold580 GLEAN promoter 527364 528363 0.999372 + . ID=CGI_10020513; scaffold580 GLEAN mRNA 528364 528576 0.999372 + . ID=CGI_10020513; scaffold580 GLEAN mRNA 529735 532671 0.570308 - . ID=CGI_10020514; scaffold580 GLEAN promoter 532672 533671 0.570308 - . ID=CGI_10020514; scaffold580 GLEAN promoter 533985 534984 0.999377 + . ID=CGI_10020515; scaffold580 TRF Tandem_Repeat 534773 534842 140 + . . scaffold580 GLEAN mRNA 534985 547949 0.999377 + . ID=CGI_10020515; scaffold580 TRF Tandem_Repeat 536644 536705 115 + . . scaffold580 TRF Tandem_Repeat 540907 540978 54 + . . scaffold580 WUBlastX LTR_Pao 542911 543000 53 - . . scaffold580 WUBlastX LTR_Pao 542997 543254 69 - . . scaffold580 WUBlastX LTR_Pao 542997 543143 80 - . . scaffold580 WUBlastX LTR_Pao 543245 543373 59 - . . scaffold580 WUBlastX LTR_Pao 543245 543409 34 - . . scaffold580 WUBlastX LTR_Pao 543623 543979 39 - . . scaffold580 WUBlastX LTR_Pao 543949 544257 53 - . . scaffold580 WUBlastX LTR_Pao 544096 544257 63 - . . scaffold580 WUBlastX LTR_Gypsy-Troyk 545532 546152 234 + . . scaffold580 WUBlastX LTR_Gypsy-Troyk 545642 547507 1229 + . . scaffold580 WUBlastX LTR_Gypsy-Troyk 547518 547784 72 + . . scaffold580 WUBlastX LTR_Gypsy-Troyk 547530 547856 32 + . . scaffold580 GLEAN promoter 547794 548793 0.999676 + . ID=CGI_10020516; scaffold580 GLEAN mRNA 548794 565173 0.999676 + . ID=CGI_10020516; scaffold580 WUBlastX DNA_Harbinger 549245 549868 58 + . . scaffold580 WUBlastX DNA_Harbinger 549386 549979 224 + . . scaffold580 GLEAN mRNA 558946 560580 0.747854 - . ID=CGI_10020517; scaffold580 GLEAN promoter 560581 561580 0.747854 - . ID=CGI_10020517; scaffold580 GLEAN promoter 569574 570573 0.889923 + . ID=CGI_10020518; scaffold580 GLEAN promoter 570370 571369 1 + . ID=CGI_10020519; scaffold580 GLEAN mRNA 570574 571311 0.889923 + . ID=CGI_10020518; scaffold580 GLEAN mRNA 571370 573124 1 + . ID=CGI_10020519; scaffold580 GLEAN mRNA 575955 581724 0.999676 - . ID=CGI_10020520; scaffold580 TRF Tandem_Repeat 580633 580673 57 + . . scaffold580 GLEAN promoter 581725 582724 0.999676 - . ID=CGI_10020520; scaffold580 GLEAN mRNA 583947 586392 0.999415 - . ID=CGI_10020521; scaffold580 TRF Tandem_Repeat 586316 586362 94 + . . scaffold580 GLEAN promoter 586393 587392 0.999415 - . ID=CGI_10020521; scaffold580 TRF Tandem_Repeat 586560 586605 83 + . . scaffold580 GLEAN mRNA 587580 590441 1 - . ID=CGI_10020522; scaffold580 GLEAN promoter 590442 591441 1 - . ID=CGI_10020522; scaffold580 TRF Tandem_Repeat 591132 591157 52 + . . scaffold580 TRF Tandem_Repeat 593269 593296 56 + . . scaffold580 GLEAN promoter 594259 595258 0.994055 + . ID=CGI_10020523; scaffold580 GLEAN mRNA 595259 598880 0.994055 + . ID=CGI_10020523; scaffold580 GLEAN promoter 601285 602284 1 + . ID=CGI_10020524; scaffold580 GLEAN mRNA 602285 618991 1 + . ID=CGI_10020524; scaffold580 TRF Tandem_Repeat 614757 614805 98 + . . scaffold580 GLEAN mRNA 620608 625857 0.544852 - . ID=CGI_10020525; scaffold580 TRF Tandem_Repeat 623190 623293 163 + . . scaffold580 GLEAN promoter 625858 626857 0.544852 - . ID=CGI_10020525; scaffold580 TRF Tandem_Repeat 631411 631475 130 + . . scaffold580 GLEAN mRNA 633162 651282 0.999206 - . ID=CGI_10020526; scaffold580 TRF Tandem_Repeat 637521 637573 97 + . . scaffold580 GLEAN promoter 641840 642839 0.999664 + . ID=CGI_10020527; scaffold580 TRF Tandem_Repeat 642207 642254 96 + . . scaffold580 GLEAN mRNA 642840 645633 0.999664 + . ID=CGI_10020527; scaffold580 TRF Tandem_Repeat 646574 646610 74 + . . scaffold580 TRF Tandem_Repeat 648450 648626 174 + . . scaffold580 TRF Tandem_Repeat 648654 648817 193 + . . scaffold580 TRF Tandem_Repeat 648902 648988 122 + . . scaffold580 GLEAN promoter 651283 651412 0.999206 - . ID=CGI_10020526; scaffold581 GLEAN mRNA 8702 32094 0.999834 - . ID=CGI_10013733; scaffold581 TRF Tandem_Repeat 16973 17029 98 + . . scaffold581 WUBlastX LINE_L1-Tx1 17253 17987 177 + . . scaffold581 WUBlastX LINE_L1-Tx1 17989 18255 69 + . . scaffold581 WUBlastX LINE_L1-Tx1 18255 18542 279 + . . scaffold581 WUBlastX LINE_L1-Tx1 18539 19306 267 + . . scaffold581 WUBlastX LINE_L1-Tx1 19760 19876 26 + . . scaffold581 WUBlastX LINE_L1-Tx1 20086 20187 32 + . . scaffold581 GLEAN promoter 32095 33094 0.999834 - . ID=CGI_10013733; scaffold581 TRF Tandem_Repeat 34897 35406 474 + . . scaffold581 TRF Tandem_Repeat 34898 35406 405 + . . scaffold581 TRF Tandem_Repeat 34899 35409 506 + . . scaffold581 TRF Tandem_Repeat 34900 35409 512 + . . scaffold581 TRF Tandem_Repeat 36024 36386 324 + . . scaffold581 TRF Tandem_Repeat 36024 36387 323 + . . scaffold581 TRF Tandem_Repeat 36050 36386 308 + . . scaffold581 TRF Tandem_Repeat 38407 39344 984 + . . scaffold581 GLEAN mRNA 39655 46674 0.69862 - . ID=CGI_10013734; scaffold581 TRF Tandem_Repeat 45225 45272 51 + . . scaffold581 TRF Tandem_Repeat 45230 45280 57 + . . scaffold581 GLEAN promoter 46054 47053 1 + . ID=CGI_10013735; scaffold581 GLEAN promoter 46675 47674 0.69862 - . ID=CGI_10013734; scaffold581 GLEAN mRNA 47054 49663 1 + . ID=CGI_10013735; scaffold581 GLEAN mRNA 58880 70643 0.322311 - . ID=CGI_10013736; scaffold581 TRF Tandem_Repeat 61475 61559 154 + . . scaffold581 TRF Tandem_Repeat 62889 62931 86 + . . scaffold581 TRF Tandem_Repeat 69618 69643 52 + . . scaffold581 GLEAN promoter 70644 71643 0.322311 - . ID=CGI_10013736; scaffold581 TRF Tandem_Repeat 72601 73357 775 + . . scaffold581 TRF Tandem_Repeat 72608 73354 935 + . . scaffold581 TRF Tandem_Repeat 78575 78661 77 + . . scaffold581 GLEAN promoter 91708 92707 0.796295 + . ID=CGI_10013737; scaffold581 TRF Tandem_Repeat 92636 92705 131 + . . scaffold581 GLEAN mRNA 92708 105357 0.796295 + . ID=CGI_10013737; scaffold581 GLEAN mRNA 112021 112949 1 - . ID=CGI_10013738; scaffold581 GLEAN promoter 112950 113949 1 - . ID=CGI_10013738; scaffold581 TRF Tandem_Repeat 115306 115341 72 + . . scaffold581 TRF Tandem_Repeat 117575 117601 54 + . . scaffold581 TRF Tandem_Repeat 129679 129819 129 + . . scaffold581 TRF Tandem_Repeat 131508 131618 111 + . . scaffold581 WUBlastX LTR_Ngaro 131859 132563 108 + . . scaffold581 WUBlastX LTR_Ngaro 132906 134459 702 + . . scaffold581 WUBlastX LTR_Ngaro 134420 134737 52 + . . scaffold581 WUBlastX LTR_Ngaro 134727 135149 166 + . . scaffold581 WUBlastX LTR_Ngaro 135125 135286 69 + . . scaffold581 WUBlastX DNA_Harbinger 164537 164839 28 - . . scaffold581 WUBlastX DNA_Harbinger 164627 165601 308 - . . scaffold581 WUBlastX LTR_Ngaro 177233 177649 25 + . . scaffold581 WUBlastX LTR_Ngaro 177903 178040 24 + . . scaffold581 WUBlastX LTR_Ngaro 177945 178448 87 + . . scaffold581 WUBlastX LTR_Ngaro 178115 178747 183 + . . scaffold581 WUBlastX LTR_Gypsy 180313 180762 175 + . . scaffold581 GLEAN mRNA 181853 194211 0.517038 - . ID=CGI_10013740; scaffold581 WUBlastX DNA_Sola 188844 189065 78 - . . scaffold581 GLEAN promoter 194212 195211 0.517038 - . ID=CGI_10013740; scaffold581 TRF Tandem_Repeat 195210 195859 920 + . . scaffold581 TRF Tandem_Repeat 195210 195859 900 + . . scaffold581 TRF Tandem_Repeat 195210 195859 920 + . . scaffold581 GLEAN mRNA 197152 206745 0.808206 - . ID=CGI_10013741; scaffold581 WUBlastX DNA_En-Spm 197904 198173 83 - . . scaffold581 GLEAN promoter 206746 207745 0.808206 - . ID=CGI_10013741; scaffold581 WUBlastX LTR_Gypsy 206961 207161 49 + . . scaffold581 WUBlastX LTR_Gypsy 206997 207164 106 + . . scaffold581 WUBlastX LTR_Gypsy 207027 207164 108 + . . scaffold581 WUBlastX LTR_Gypsy 207070 207393 163 + . . scaffold581 WUBlastX LTR_Gypsy 207124 207372 207 + . . scaffold581 WUBlastX LTR_Gypsy 207160 207438 158 + . . scaffold581 WUBlastX LTR_Gypsy 207464 207742 128 + . . scaffold581 WUBlastX LTR_Gypsy 207470 207805 96 + . . scaffold581 WUBlastX LINE_L1-Tx1 211952 212278 39 + . . scaffold581 TRF Tandem_Repeat 212508 212555 80 + . . scaffold581 TRF Tandem_Repeat 216166 216255 53 + . . scaffold581 TRF Tandem_Repeat 216184 216251 66 + . . scaffold581 TRF Tandem_Repeat 216811 216908 88 + . . scaffold581 TRF Tandem_Repeat 217705 217814 98 + . . scaffold581 TRF Tandem_Repeat 217705 217814 104 + . . scaffold581 GLEAN mRNA 217971 276528 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 218379 218589 129 + . . scaffold581 TRF Tandem_Repeat 222921 222997 136 + . . scaffold581 TRF Tandem_Repeat 237283 237410 121 + . . scaffold581 TRF Tandem_Repeat 237304 237412 164 + . . scaffold581 TRF Tandem_Repeat 239010 239047 76 + . . scaffold581 TRF Tandem_Repeat 275379 275431 60 + . . scaffold581 TRF Tandem_Repeat 275382 275428 53 + . . scaffold581 TRF Tandem_Repeat 275439 275474 54 + . . scaffold581 WUBlastX LINE_L1-Tx1 275490 275978 116 - . . scaffold581 WUBlastX LINE_L1-Tx1 275640 276038 42 - . . scaffold581 GLEAN promoter 276529 277528 0.207483 - . ID=CGI_10013742; scaffold581 TRF Tandem_Repeat 287171 287201 62 + . . scaffold581 TRF Tandem_Repeat 287288 287808 180 + . . scaffold581 WUBlastX LINE_L1 301562 301732 31 + . . scaffold581 WUBlastX LINE_L1-Tx1 301607 301741 42 + . . scaffold581 WUBlastX LINE_L1-Tx1 301666 302058 147 + . . scaffold581 WUBlastX LINE_L1-Tx1 302734 303399 114 + . . scaffold581 GLEAN promoter 303286 304285 0.889462 + . ID=CGI_10013743; scaffold581 WUBlastX LINE_L1-Tx1 303702 303758 31 + . . scaffold581 GLEAN mRNA 304286 314897 0.889462 + . ID=CGI_10013743; scaffold581 TRF Tandem_Repeat 308754 309819 945 + . . scaffold581 GLEAN promoter 319169 320168 0.981175 + . ID=CGI_10013744; scaffold581 GLEAN mRNA 320169 326492 0.981175 + . ID=CGI_10013744; scaffold581 TRF Tandem_Repeat 321209 321290 155 + . . scaffold581 WUBlastX LTR_Gypsy 331319 331576 140 - . . scaffold581 WUBlastX LTR_Gypsy 331319 331717 74 - . . scaffold581 WUBlastX LTR_Gypsy 331388 331576 155 - . . scaffold581 WUBlastX DNA_TcMar-Tc1 332053 333054 479 - . . scaffold581 TRF Tandem_Repeat 334003 334050 96 + . . scaffold581 GLEAN promoter 335323 336322 1 + . ID=CGI_10013745; scaffold581 GLEAN mRNA 336323 337441 1 + . ID=CGI_10013745; scaffold581 GLEAN mRNA 350645 351703 0.999998 - . ID=CGI_10013746; scaffold581 GLEAN promoter 351704 352703 0.999998 - . ID=CGI_10013746; scaffold581 WUBlastX LINE_CR1 353811 353981 43 + . . scaffold581 WUBlastX LINE_CR1-L2 353811 353945 73 + . . scaffold581 WUBlastX LINE_L2 354625 354978 49 + . . scaffold581 TRF Tandem_Repeat 355134 355194 108 + . . scaffold581 TRF Tandem_Repeat 363241 363287 94 + . . scaffold581 TRF Tandem_Repeat 365779 366489 1203 + . . scaffold582 WUBlastX LINE_CR1-L2 3209 3457 107 - . . scaffold582 TRF Tandem_Repeat 8916 8987 126 + . . scaffold582 GLEAN mRNA 12277 14156 0.99331 - . ID=CGI_10003412; scaffold582 TRF Tandem_Repeat 12557 12588 57 + . . scaffold582 GLEAN promoter 14157 15156 0.99331 - . ID=CGI_10003412; scaffold582 GLEAN promoter 16701 17700 0.544852 + . ID=CGI_10003413; scaffold582 GLEAN mRNA 17701 24196 0.544852 + . ID=CGI_10003413; scaffold582 TRF Tandem_Repeat 26437 26487 84 + . . scaffold582 TRF Tandem_Repeat 27958 28004 85 + . . scaffold582 WUBlastX DNA_Harbinger 29019 29225 59 + . . scaffold582 WUBlastX DNA_Harbinger 29590 29832 82 - . . scaffold582 TRF Tandem_Repeat 33022 33059 76 + . . scaffold582 TRF Tandem_Repeat 34966 35003 76 + . . scaffold582 WUBlastX LTR_Gypsy 38661 38735 26 - . . scaffold582 WUBlastX LTR_Gypsy 38745 39281 195 - . . scaffold582 WUBlastX LTR_Gypsy 39200 39706 430 - . . scaffold582 WUBlastX LTR_Gypsy 39699 40136 349 - . . scaffold582 WUBlastX LTR_Gypsy 40126 40533 215 - . . scaffold582 WUBlastX LTR_Gypsy 40427 41050 254 - . . scaffold582 WUBlastX LTR_Gypsy 40535 41044 495 - . . scaffold582 WUBlastX LTR_Gypsy 41004 41423 299 - . . scaffold582 WUBlastX LTR_Gypsy 41034 41513 147 - . . scaffold582 WUBlastX LTR_Gypsy 41034 41663 70 - . . scaffold582 WUBlastX LTR_Gypsy 41754 41951 34 - . . scaffold582 WUBlastX LTR_Gypsy 41799 41999 47 - . . scaffold582 WUBlastX LTR_Gypsy 42029 42211 80 - . . scaffold582 WUBlastX LTR_Gypsy 42216 42434 154 - . . scaffold582 WUBlastX LTR_Gypsy 42267 42479 24 - . . scaffold582 WUBlastX LTR_Gypsy 42487 42600 55 - . . scaffold582 TRF Tandem_Repeat 57995 58039 90 + . . scaffold582 TRF Tandem_Repeat 59228 59530 131 + . . scaffold582 TRF Tandem_Repeat 59232 59587 202 + . . scaffold582 TRF Tandem_Repeat 59232 59464 184 + . . scaffold582 TRF Tandem_Repeat 60630 60905 92 + . . scaffold582 TRF Tandem_Repeat 60638 60967 149 + . . scaffold582 TRF Tandem_Repeat 60715 60968 180 + . . scaffold582 TRF Tandem_Repeat 61264 61556 150 + . . scaffold582 TRF Tandem_Repeat 62805 63135 152 + . . scaffold582 TRF Tandem_Repeat 67840 67891 77 + . . scaffold583 GLEAN promoter 2893 3892 0.618241 + . ID=CGI_10023602; scaffold583 GLEAN mRNA 3893 4429 0.618241 + . ID=CGI_10023602; scaffold583 TRF Tandem_Repeat 8586 8632 94 + . . scaffold583 TRF Tandem_Repeat 8632 8671 80 + . . scaffold583 GLEAN promoter 10252 11251 0.538908 + . ID=CGI_10023603; scaffold583 GLEAN mRNA 11252 30786 0.538908 + . ID=CGI_10023603; scaffold583 WUBlastX LINE_L1-Tx1 28713 29648 275 - . . scaffold583 TRF Tandem_Repeat 30126 30150 50 + . . scaffold583 WUBlastX LTR_Gypsy 30151 30693 103 + . . scaffold583 WUBlastX LTR_Gypsy 30194 30496 207 + . . scaffold583 WUBlastX LTR_Gypsy 30245 30553 129 + . . scaffold583 TRF Tandem_Repeat 31771 31858 144 + . . scaffold583 TRF Tandem_Repeat 47274 47319 92 + . . scaffold583 WUBlastX LINE_RTE-X 56522 58432 619 - . . scaffold583 WUBlastX LINE_CR1 58435 58590 45 - . . scaffold583 WUBlastX LINE_RTE-X 58444 58677 37 - . . scaffold583 WUBlastX LINE_CR1 58447 58803 36 - . . scaffold583 WUBlastX LINE_L1 58789 59454 215 - . . scaffold583 WUBlastX LINE_L1 58843 59649 122 - . . scaffold583 TRF Tandem_Repeat 61458 61601 191 + . . scaffold583 TRF Tandem_Repeat 65202 65259 116 + . . scaffold583 GLEAN promoter 66959 67958 0.544852 + . ID=CGI_10023604; scaffold583 GLEAN mRNA 67959 87518 0.544852 + . ID=CGI_10023604; scaffold583 TRF Tandem_Repeat 86063 86109 94 + . . scaffold583 GLEAN promoter 94812 95811 0.99383 + . ID=CGI_10023605; scaffold583 TRF Tandem_Repeat 95075 95105 55 + . . scaffold583 GLEAN mRNA 95812 104187 0.99383 + . ID=CGI_10023605; scaffold583 TRF Tandem_Repeat 104925 104973 98 + . . scaffold583 GLEAN mRNA 106230 107177 0.999974 - . ID=CGI_10023606; scaffold583 GLEAN promoter 107178 108177 0.999974 - . ID=CGI_10023606; scaffold583 TRF Tandem_Repeat 108790 108866 102 + . . scaffold583 TRF Tandem_Repeat 110810 110849 80 + . . scaffold583 TRF Tandem_Repeat 111159 111222 128 + . . scaffold583 TRF Tandem_Repeat 118135 118181 94 + . . scaffold583 GLEAN mRNA 135994 142377 0.920355 - . ID=CGI_10023607; scaffold583 TRF Tandem_Repeat 137574 137602 58 + . . scaffold583 TRF Tandem_Repeat 139840 139917 156 + . . scaffold583 TRF Tandem_Repeat 141551 141607 62 + . . scaffold583 GLEAN promoter 142378 143377 0.920355 - . ID=CGI_10023607; scaffold583 GLEAN mRNA 149510 158447 0.987433 - . ID=CGI_10023608; scaffold583 TRF Tandem_Repeat 150052 150091 80 + . . scaffold583 GLEAN promoter 158448 159447 0.987433 - . ID=CGI_10023608; scaffold583 GLEAN mRNA 158568 178467 0.429311 - . ID=CGI_10023609; scaffold583 TRF Tandem_Repeat 161299 161352 108 + . . scaffold583 TRF Tandem_Repeat 165274 165310 51 + . . scaffold583 TRF Tandem_Repeat 165278 165311 54 + . . scaffold583 TRF Tandem_Repeat 171022 171072 102 + . . scaffold583 GLEAN promoter 178468 179467 0.429311 - . ID=CGI_10023609; scaffold583 TRF Tandem_Repeat 181201 181316 119 + . . scaffold583 TRF Tandem_Repeat 185330 185636 215 + . . scaffold583 TRF Tandem_Repeat 187475 187531 114 + . . scaffold583 GLEAN promoter 191578 192577 1 + . ID=CGI_10023610; scaffold583 GLEAN mRNA 192578 197052 1 + . ID=CGI_10023610; scaffold583 TRF Tandem_Repeat 193166 193209 88 + . . scaffold583 GLEAN mRNA 200741 204023 0.593389 - . ID=CGI_10023611; scaffold583 TRF Tandem_Repeat 202402 202451 57 + . . scaffold583 GLEAN promoter 204024 205023 0.992139 + . ID=CGI_10023612; scaffold583 GLEAN promoter 204024 205023 0.593389 - . ID=CGI_10023611; scaffold583 GLEAN mRNA 205024 219392 0.992139 + . ID=CGI_10023612; scaffold583 TRF Tandem_Repeat 213332 214316 1551 + . . scaffold583 TRF Tandem_Repeat 218031 218154 176 + . . scaffold583 WUBlastX DNA_Merlin 231596 232288 342 + . . scaffold583 WUBlastX DNA_Harbinger 233917 234078 62 - . . scaffold583 WUBlastX DNA_Harbinger 234180 234329 68 - . . scaffold583 WUBlastX DNA_Harbinger 234183 234389 64 - . . scaffold583 GLEAN promoter 244420 245419 0.99076 + . ID=CGI_10023613; scaffold583 GLEAN mRNA 245420 251821 0.99076 + . ID=CGI_10023613; scaffold583 WUBlastX DNA_En-Spm 246097 248010 1217 + . . scaffold583 TRF Tandem_Repeat 249224 249430 79 + . . scaffold583 TRF Tandem_Repeat 249229 249435 369 + . . scaffold583 TRF Tandem_Repeat 249244 249361 59 + . . scaffold583 TRF Tandem_Repeat 249325 249435 57 + . . scaffold583 TRF Tandem_Repeat 253131 253178 55 + . . scaffold583 WUBlastX LINE_Penelope 255343 255543 80 - . . scaffold583 WUBlastX DNA_hAT-Blackja 258909 259112 28 - . . scaffold583 WUBlastX DNA_hAT-Blackja 259302 259466 25 - . . scaffold583 WUBlastX DNA_hAT-Blackja 259362 259466 28 - . . scaffold583 WUBlastX DNA_hAT-Blackja 259386 259487 33 - . . scaffold583 WUBlastX DNA_hAT-Blackja 259466 259597 30 - . . scaffold583 WUBlastX DNA_hAT-Blackja 259713 259832 55 - . . scaffold583 WUBlastX DNA_hAT-Blackja 259832 259936 45 - . . scaffold583 WUBlastX DNA_hAT-Blackja 259939 260010 44 - . . scaffold583 WUBlastX DNA_hAT-Blackja 260334 260414 27 - . . scaffold583 WUBlastX DNA_MuDR 263794 264210 59 - . . scaffold583 GLEAN mRNA 263929 265960 0.540216 - . ID=CGI_10023614; scaffold583 GLEAN promoter 265961 266960 0.540216 - . ID=CGI_10023614; scaffold583 WUBlastX LTR_Gypsy 266331 266954 26 - . . scaffold583 GLEAN mRNA 266361 266834 0.53608 - . ID=CGI_10023615; scaffold583 WUBlastX LTR_Gypsy 266364 266852 42 - . . scaffold583 GLEAN promoter 266835 267834 0.53608 - . ID=CGI_10023615; scaffold583 TRF Tandem_Repeat 270116 270799 887 + . . scaffold583 WUBlastX DNA_TcMar-ISRm1 273964 274281 86 - . . scaffold583 WUBlastX DNA_TcMar-ISRm1 274018 274281 114 - . . scaffold583 WUBlastX DNA_TcMar-ISRm1 274093 274281 119 - . . scaffold583 WUBlastX DNA_TcMar-Ant1 274290 274544 31 - . . scaffold583 TRF Tandem_Repeat 275714 275782 138 + . . scaffold583 GLEAN promoter 276897 277896 1 + . ID=CGI_10023616; scaffold583 GLEAN mRNA 277897 278436 1 + . ID=CGI_10023616; scaffold583 WUBlastX LTR_Gypsy 278904 279542 25 + . . scaffold583 GLEAN promoter 278966 279965 0.998382 + . ID=CGI_10023617; scaffold583 WUBlastX LTR_Gypsy 279015 279473 47 + . . scaffold583 WUBlastX LTR_DIRS 279105 280775 184 + . . scaffold583 WUBlastX LTR_DIRS 279627 280883 233 + . . scaffold583 GLEAN mRNA 279966 280898 0.998382 + . ID=CGI_10023617; scaffold583 WUBlastX LTR_DIRS 281793 282044 32 + . . scaffold583 WUBlastX LTR_Gypsy 283828 284388 87 - . . scaffold583 WUBlastX LTR_Gypsy 283915 284397 162 - . . scaffold583 WUBlastX LTR_Gypsy-Cigr 284113 284400 235 - . . scaffold583 WUBlastX LTR_Gypsy 284131 284451 127 - . . scaffold583 WUBlastX LTR_Gypsy-Cigr 284439 284735 65 - . . scaffold583 WUBlastX LTR_Gypsy-Cigr 285034 285282 23 - . . scaffold583 WUBlastX LTR_Gypsy 285136 285666 50 - . . scaffold583 WUBlastX LTR_Copia 285415 285591 51 - . . scaffold583 WUBlastX LTR_Copia 285457 285609 70 - . . scaffold583 WUBlastX LTR_Gypsy 285834 286124 31 - . . scaffold583 TRF Tandem_Repeat 286875 286929 58 + . . scaffold583 GLEAN mRNA 287798 289106 0.500215 - . ID=CGI_10023618; scaffold583 GLEAN promoter 289107 290106 0.500215 - . ID=CGI_10023618; scaffold583 WUBlastX DNA_En-Spm 289536 290192 499 - . . scaffold583 TRF Tandem_Repeat 291376 291432 114 + . . scaffold583 GLEAN promoter 294070 295069 1 + . ID=CGI_10023619; scaffold583 GLEAN mRNA 295070 301368 1 + . ID=CGI_10023619; scaffold583 WUBlastX DNA_Sola 309771 310040 49 + . . scaffold583 WUBlastX DNA_Sola 309801 310238 48 + . . scaffold583 WUBlastX DNA_Harbinger 312375 312602 87 - . . scaffold583 GLEAN mRNA 315551 319208 1 - . ID=CGI_10023620; scaffold583 TRF Tandem_Repeat 316908 316958 102 + . . scaffold583 GLEAN promoter 319209 320208 1 - . ID=CGI_10023620; scaffold583 TRF Tandem_Repeat 320143 320184 75 + . . scaffold583 TRF Tandem_Repeat 330000 330051 104 + . . scaffold583 TRF Tandem_Repeat 344353 344388 54 + . . scaffold583 TRF Tandem_Repeat 351197 351253 69 + . . scaffold583 GLEAN mRNA 365612 390201 0.692695 - . ID=CGI_10023621; scaffold583 TRF Tandem_Repeat 373139 373183 90 + . . scaffold583 TRF Tandem_Repeat 374997 375038 57 + . . scaffold583 TRF Tandem_Repeat 376712 376951 178 + . . scaffold583 TRF Tandem_Repeat 376726 377393 452 + . . scaffold583 TRF Tandem_Repeat 377149 377391 129 + . . scaffold583 TRF Tandem_Repeat 379915 379946 64 + . . scaffold583 TRF Tandem_Repeat 380322 380367 92 + . . scaffold583 WUBlastX LINE_CR1-L2 388016 388180 59 - . . scaffold583 WUBlastX LINE_CR1-L2 388197 388331 32 - . . scaffold583 WUBlastX LINE_CR1-L2 388212 388433 23 - . . scaffold583 WUBlastX LINE_CR1-L2 388460 388600 46 - . . scaffold583 GLEAN promoter 390202 391201 0.692695 - . ID=CGI_10023621; scaffold583 GLEAN mRNA 390486 398727 0.933065 - . ID=CGI_10023622; scaffold583 GLEAN promoter 396526 397525 1 + . ID=CGI_10023623; scaffold583 GLEAN mRNA 397526 397747 1 + . ID=CGI_10023623; scaffold583 GLEAN promoter 398728 399727 0.933065 - . ID=CGI_10023622; scaffold583 GLEAN mRNA 405454 406932 0.500772 - . ID=CGI_10023624; scaffold583 GLEAN promoter 406933 407932 0.500772 - . ID=CGI_10023624; scaffold583 GLEAN mRNA 412825 450410 0.995957 - . ID=CGI_10023625; scaffold583 TRF Tandem_Repeat 416219 416840 958 + . . scaffold583 TRF Tandem_Repeat 421855 421899 67 + . . scaffold583 TRF Tandem_Repeat 426998 427089 116 + . . scaffold583 TRF Tandem_Repeat 435080 435859 654 + . . scaffold583 WUBlastX LINE_L1-Tx1 437587 441390 1955 - . . scaffold583 WUBlastX LINE_L2 441747 442409 123 - . . scaffold583 WUBlastX LINE_L1 441936 442538 45 - . . scaffold583 TRF Tandem_Repeat 444366 444405 80 + . . scaffold583 GLEAN promoter 450411 451410 0.995957 - . ID=CGI_10023625; scaffold583 GLEAN promoter 470956 471955 0.559717 + . ID=CGI_10023626; scaffold583 GLEAN mRNA 471956 505704 0.559717 + . ID=CGI_10023626; scaffold583 WUBlastX DNA_Sola 473798 474034 88 - . . scaffold583 TRF Tandem_Repeat 482688 482839 209 + . . scaffold583 TRF Tandem_Repeat 483515 483605 146 + . . scaffold583 TRF Tandem_Repeat 483571 483660 99 + . . scaffold583 TRF Tandem_Repeat 485135 485241 142 + . . scaffold583 TRF Tandem_Repeat 492565 492600 56 + . . scaffold583 GLEAN promoter 517104 518103 0.996228 + . ID=CGI_10023627; scaffold583 GLEAN mRNA 518104 527778 0.996228 + . ID=CGI_10023627; scaffold583 WUBlastX LINE_L1-Tx1 529563 529757 43 - . . scaffold583 WUBlastX LINE_L1 529732 530580 109 - . . scaffold583 WUBlastX LINE_L1-Tx1 529876 531030 277 - . . scaffold583 WUBlastX LINE_L1-Tx1 530080 531081 560 - . . scaffold583 GLEAN promoter 532637 533636 0.996433 + . ID=CGI_10023628; scaffold583 GLEAN mRNA 533637 534586 0.996433 + . ID=CGI_10023628; scaffold583 GLEAN promoter 536544 537543 0.996078 + . ID=CGI_10023629; scaffold583 GLEAN mRNA 537544 542296 0.996078 + . ID=CGI_10023629; scaffold583 TRF Tandem_Repeat 541203 541237 61 + . . scaffold583 GLEAN promoter 543339 544338 0.999999 + . ID=CGI_10023630; scaffold583 GLEAN mRNA 544339 558829 0.999999 + . ID=CGI_10023630; scaffold583 TRF Tandem_Repeat 566477 566513 74 + . . scaffold583 TRF Tandem_Repeat 567378 567431 108 + . . scaffold583 GLEAN promoter 568172 569171 0.42639 + . ID=CGI_10023631; scaffold583 GLEAN mRNA 569172 583753 0.42639 + . ID=CGI_10023631; scaffold583 TRF Tandem_Repeat 570770 570801 57 + . . scaffold583 TRF Tandem_Repeat 572565 572620 103 + . . scaffold583 GLEAN mRNA 587692 594902 0.557605 - . ID=CGI_10023632; scaffold583 TRF Tandem_Repeat 592539 592619 155 + . . scaffold583 GLEAN promoter 593907 594906 0.542478 + . ID=CGI_10023633; scaffold583 TRF Tandem_Repeat 594616 594657 84 + . . scaffold583 GLEAN promoter 594903 595902 0.557605 - . ID=CGI_10023632; scaffold583 GLEAN mRNA 594907 597355 0.542478 + . ID=CGI_10023633; scaffold583 GLEAN mRNA 597933 610785 0.965377 - . ID=CGI_10023634; scaffold583 GLEAN promoter 610786 611785 0.965377 - . ID=CGI_10023634; scaffold583 GLEAN promoter 610902 611901 0.995804 + . ID=CGI_10023635; scaffold583 GLEAN mRNA 611902 612375 0.995804 + . ID=CGI_10023635; scaffold583 GLEAN promoter 640471 641470 0.329891 + . ID=CGI_10023636; scaffold583 GLEAN mRNA 641471 646067 0.329891 + . ID=CGI_10023636; scaffold583 GLEAN mRNA 650988 658263 0.937847 - . ID=CGI_10023637; scaffold583 TRF Tandem_Repeat 652012 652047 72 + . . scaffold583 GLEAN promoter 658264 659263 0.937847 - . ID=CGI_10023637; scaffold583 GLEAN mRNA 688183 698240 0.999357 - . ID=CGI_10023638; scaffold583 GLEAN promoter 698241 699240 0.999357 - . ID=CGI_10023638; scaffold583 GLEAN promoter 698513 699512 0.989593 + . ID=CGI_10023639; scaffold583 GLEAN mRNA 699513 720247 0.989593 + . ID=CGI_10023639; scaffold583 TRF Tandem_Repeat 701208 701479 348 + . . scaffold583 GLEAN mRNA 706877 715256 1 - . ID=CGI_10023640; scaffold583 GLEAN promoter 715257 716256 1 - . ID=CGI_10023640; scaffold583 GLEAN mRNA 725416 730095 0.575444 - . ID=CGI_10023641; scaffold583 GLEAN promoter 730096 731095 0.575444 - . ID=CGI_10023641; scaffold583 GLEAN promoter 732634 733633 1 + . ID=CGI_10023642; scaffold583 GLEAN mRNA 733634 740876 1 + . ID=CGI_10023642; scaffold583 WUBlastX LINE_L2 734363 734704 71 - . . scaffold583 GLEAN promoter 741000 741999 0.5 + . ID=CGI_10023644; scaffold583 GLEAN mRNA 741499 750992 0.999674 - . ID=CGI_10023643; scaffold583 GLEAN mRNA 742000 755299 0.5 + . ID=CGI_10023644; scaffold583 WUBlastX LINE_CR1 745405 746562 216 - . . scaffold583 WUBlastX LINE_CR1 746077 747150 319 - . . scaffold583 WUBlastX LINE_CR1 746077 746562 368 - . . scaffold583 WUBlastX LINE_CR1 746558 747331 234 - . . scaffold583 GLEAN promoter 750993 751992 0.999674 - . ID=CGI_10023643; scaffold583 GLEAN mRNA 752707 772390 0.693691 - . ID=CGI_10023645; scaffold583 TRF Tandem_Repeat 758167 759068 1197 + . . scaffold583 GLEAN promoter 772391 773390 0.693691 - . ID=CGI_10023645; scaffold583 GLEAN promoter 772524 773523 0.996819 + . ID=CGI_10023646; scaffold583 GLEAN mRNA 773524 776408 0.996819 + . ID=CGI_10023646; scaffold583 TRF Tandem_Repeat 776436 776482 85 + . . scaffold583 GLEAN promoter 776693 777692 0.999973 + . ID=CGI_10023647; scaffold583 GLEAN mRNA 777693 778998 0.999973 + . ID=CGI_10023647; scaffold583 GLEAN promoter 792990 793989 0.999012 + . ID=CGI_10023648; scaffold583 TRF Tandem_Repeat 793490 793514 50 + . . scaffold583 GLEAN mRNA 793990 807355 0.999012 + . ID=CGI_10023648; scaffold583 TRF Tandem_Repeat 797927 797960 68 + . . scaffold583 GLEAN mRNA 809273 818393 1 - . ID=CGI_10023649; scaffold583 TRF Tandem_Repeat 812088 813222 1512 + . . scaffold583 GLEAN promoter 818394 819393 1 - . ID=CGI_10023649; scaffold583 WUBlastX DNA_TcMar-Marin 819353 819604 56 - . . scaffold583 WUBlastX DNA_TcMar-Marin 819698 819754 21 - . . scaffold583 GLEAN promoter 823802 824801 0.660675 + . ID=CGI_10023650; scaffold583 GLEAN mRNA 824802 847792 0.660675 + . ID=CGI_10023650; scaffold583 TRF Tandem_Repeat 831793 831846 94 + . . scaffold583 WUBlastX LINE_RTE-X 852236 852373 26 + . . scaffold583 WUBlastX LINE_RTE-X 852266 852370 31 + . . scaffold583 WUBlastX LINE_RTE-X 852585 852908 20 + . . scaffold583 WUBlastX LINE_RTE-X 852675 852983 45 + . . scaffold583 WUBlastX LINE_RTE-X 852675 852899 66 + . . scaffold583 GLEAN mRNA 854549 858852 0.999676 - . ID=CGI_10023651; scaffold583 TRF Tandem_Repeat 857571 857609 78 + . . scaffold583 TRF Tandem_Repeat 858124 858162 78 + . . scaffold583 GLEAN promoter 858853 859012 0.999676 - . ID=CGI_10023651; scaffold585 GLEAN promoter 1 2 0.999618 + . ID=CGI_10005534; scaffold585 GLEAN mRNA 3 2976 0.999618 + . ID=CGI_10005534; scaffold585 TRF Tandem_Repeat 2734 2765 64 + . . scaffold585 WUBlastX LTR_Pao 12573 12920 241 - . . scaffold585 TRF Tandem_Repeat 13001 13090 99 + . . scaffold585 TRF Tandem_Repeat 14240 15001 1143 + . . scaffold585 TRF Tandem_Repeat 15032 15063 55 + . . scaffold585 TRF Tandem_Repeat 15679 15772 125 + . . scaffold585 WUBlastX LTR_Pao 15799 16038 49 - . . scaffold585 WUBlastX LTR_Pao 15841 16032 170 - . . scaffold585 WUBlastX LTR_Pao 16017 17399 1115 - . . scaffold585 WUBlastX LTR_Pao 17402 18340 656 - . . scaffold585 WUBlastX LTR_Pao 18303 18788 373 - . . scaffold585 WUBlastX LTR_Pao 18303 19022 307 - . . scaffold585 WUBlastX LTR_Pao 19007 19390 257 - . . scaffold585 WUBlastX LTR_Pao 19393 19677 95 - . . scaffold585 WUBlastX LTR_Pao 19566 19991 144 - . . scaffold585 WUBlastX LTR_Pao 19731 20525 181 - . . scaffold585 WUBlastX LTR_Pao 19815 21011 143 - . . scaffold585 WUBlastX LTR_Pao 19860 20765 181 - . . scaffold585 GLEAN mRNA 22494 29452 0.651135 - . ID=CGI_10005535; scaffold585 GLEAN promoter 29453 30452 0.651135 - . ID=CGI_10005535; scaffold585 GLEAN mRNA 35904 45117 1 - . ID=CGI_10005536; scaffold585 TRF Tandem_Repeat 37138 37923 1136 + . . scaffold585 TRF Tandem_Repeat 43235 43570 451 + . . scaffold585 GLEAN promoter 45118 46117 1 - . ID=CGI_10005536; scaffold585 TRF Tandem_Repeat 46162 46291 93 + . . scaffold585 TRF Tandem_Repeat 46207 46353 82 + . . scaffold585 TRF Tandem_Repeat 47305 48175 1232 + . . scaffold585 TRF Tandem_Repeat 48313 48344 64 + . . scaffold585 GLEAN promoter 48546 49545 0.999526 + . ID=CGI_10005537; scaffold585 GLEAN mRNA 49546 59692 0.999526 + . ID=CGI_10005537; scaffold585 TRF Tandem_Repeat 60033 60080 78 + . . scaffold585 TRF Tandem_Repeat 60111 61069 1420 + . . scaffold585 GLEAN mRNA 65806 69086 1 - . ID=CGI_10005538; scaffold585 GLEAN promoter 69087 70086 1 - . ID=CGI_10005538; scaffold585 GLEAN promoter 70070 71069 0.555856 + . ID=CGI_10005539; scaffold585 WUBlastX LTR_Gypsy 70110 70637 79 + . . scaffold585 WUBlastX LTR_Gypsy-Cigr 70311 70784 130 + . . scaffold585 WUBlastX LTR_Gypsy-Cigr 70326 70898 106 + . . scaffold585 GLEAN mRNA 71070 71609 0.555856 + . ID=CGI_10005539; scaffold585 GLEAN mRNA 77465 88319 0.575106 - . ID=CGI_10005540; scaffold585 TRF Tandem_Repeat 84648 85414 1264 + . . scaffold585 GLEAN promoter 88320 89319 0.575106 - . ID=CGI_10005540; scaffold585 TRF Tandem_Repeat 89235 89296 117 + . . scaffold585 GLEAN mRNA 91313 107443 0.999351 - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 106833 107093 77 + . . scaffold585 WUBlastX LINE_RTE-BovB 106902 107078 101 + . . scaffold585 WUBlastX LINE_RTE-RTE 106920 107138 91 + . . scaffold585 WUBlastX LINE_RTE-BovB 106932 107093 106 + . . scaffold585 GLEAN promoter 107444 108443 0.999351 - . ID=CGI_10005541; scaffold585 WUBlastX LINE_RTE-BovB 107553 107636 23 + . . scaffold585 WUBlastX LINE_RTE-BovB 107660 108004 33 + . . scaffold585 WUBlastX LINE_RTE-BovB 108278 108400 39 + . . scaffold585 WUBlastX LINE_RTE-BovB 108408 108920 40 + . . scaffold585 WUBlastX LINE_RTE-BovB 108444 108872 130 + . . scaffold585 GLEAN promoter 109401 110400 0.510732 + . ID=CGI_10005542; scaffold585 GLEAN mRNA 110401 127262 0.510732 + . ID=CGI_10005542; scaffold585 GLEAN mRNA 119482 121693 1 - . ID=CGI_10005543; scaffold585 GLEAN promoter 121694 122693 1 - . ID=CGI_10005543; scaffold585 GLEAN mRNA 123270 129092 1 - . ID=CGI_10005544; scaffold585 TRF Tandem_Repeat 125140 125401 362 + . . scaffold585 WUBlastX LINE_RTE-BovB 127755 128516 333 + . . scaffold585 WUBlastX LINE_RTE-BovB 127806 128669 59 + . . scaffold585 GLEAN promoter 129093 129367 1 - . ID=CGI_10005544; scaffold586 WUBlastX LINE_L1 2478 3119 43 + . . scaffold586 WUBlastX LINE_L1 2622 3041 50 + . . scaffold586 WUBlastX LINE_L1 2658 3146 49 + . . scaffold586 WUBlastX LINE_L2 2691 3023 53 + . . scaffold586 WUBlastX DNA_Sola 8878 9276 93 - . . scaffold586 GLEAN promoter 12219 13218 0.978155 + . ID=CGI_10017993; scaffold586 GLEAN mRNA 13219 24157 0.978155 + . ID=CGI_10017993; scaffold586 TRF Tandem_Repeat 21217 21266 91 + . . scaffold586 WUBlastX LINE_RTE-X 28607 28774 82 + . . scaffold586 TRF Tandem_Repeat 29291 29323 66 + . . scaffold586 TRF Tandem_Repeat 29827 30247 469 + . . scaffold586 TRF Tandem_Repeat 29827 30258 508 + . . scaffold586 TRF Tandem_Repeat 29848 30253 530 + . . scaffold586 TRF Tandem_Repeat 32590 32637 80 + . . scaffold586 TRF Tandem_Repeat 32655 33192 726 + . . scaffold586 TRF Tandem_Repeat 32663 33186 670 + . . scaffold586 TRF Tandem_Repeat 33999 34063 130 + . . scaffold586 GLEAN mRNA 39179 80136 0.44547 - . ID=CGI_10017994; scaffold586 TRF Tandem_Repeat 47021 47102 155 + . . scaffold586 TRF Tandem_Repeat 51873 52021 88 + . . scaffold586 TRF Tandem_Repeat 53047 53820 743 + . . scaffold586 GLEAN promoter 80137 81136 0.44547 - . ID=CGI_10017994; scaffold586 TRF Tandem_Repeat 89064 89211 106 + . . scaffold586 TRF Tandem_Repeat 91925 92012 79 + . . scaffold586 TRF Tandem_Repeat 100940 100999 61 + . . scaffold586 TRF Tandem_Repeat 100940 100995 62 + . . scaffold586 GLEAN mRNA 103722 104087 0.999999 - . ID=CGI_10017995; scaffold586 GLEAN promoter 104088 105087 0.999999 - . ID=CGI_10017995; scaffold586 TRF Tandem_Repeat 106393 106442 100 + . . scaffold586 TRF Tandem_Repeat 107484 107529 83 + . . scaffold586 GLEAN mRNA 114071 127264 0.99886 - . ID=CGI_10017996; scaffold586 GLEAN promoter 127265 128264 0.99886 - . ID=CGI_10017996; scaffold586 GLEAN promoter 128122 129121 0.836238 + . ID=CGI_10017997; scaffold586 GLEAN mRNA 129122 130808 0.836238 + . ID=CGI_10017997; scaffold586 GLEAN mRNA 132362 140729 0.999561 - . ID=CGI_10017998; scaffold586 TRF Tandem_Repeat 134092 134282 165 + . . scaffold586 TRF Tandem_Repeat 136184 136349 167 + . . scaffold586 TRF Tandem_Repeat 138012 138133 118 + . . scaffold586 GLEAN promoter 140730 141729 0.999561 - . ID=CGI_10017998; scaffold586 GLEAN promoter 142773 143772 0.5 + . ID=CGI_10017999; scaffold586 TRF Tandem_Repeat 143019 143081 117 + . . scaffold586 TRF Tandem_Repeat 143173 143208 72 + . . scaffold586 TRF Tandem_Repeat 143354 143402 89 + . . scaffold586 GLEAN mRNA 143773 157421 0.5 + . ID=CGI_10017999; scaffold586 TRF Tandem_Repeat 149596 149643 96 + . . scaffold586 GLEAN mRNA 158543 182219 0.249413 - . ID=CGI_10018000; scaffold586 TRF Tandem_Repeat 161758 161835 93 + . . scaffold586 GLEAN promoter 165048 166047 0.964876 + . ID=CGI_10018001; scaffold586 GLEAN mRNA 166048 175536 0.964876 + . ID=CGI_10018001; scaffold586 TRF Tandem_Repeat 176846 176890 76 + . . scaffold586 WUBlastX LINE_RTE-X 177903 178190 68 - . . scaffold586 WUBlastX LINE_RTE-X 177954 178151 87 - . . scaffold586 WUBlastX LINE_RTE-X 177993 178244 49 - . . scaffold586 WUBlastX LINE_RTE-X 178005 178190 94 - . . scaffold586 WUBlastX LINE_RTE-X 178005 178151 101 - . . scaffold586 WUBlastX LINE_RTE-X 178244 178459 37 - . . scaffold586 WUBlastX LINE_RTE-X 178358 178456 49 - . . scaffold586 GLEAN promoter 182220 183219 0.249413 - . ID=CGI_10018000; scaffold586 TRF Tandem_Repeat 183116 183148 66 + . . scaffold586 WUBlastX LTR_Pao 187124 187978 840 - . . scaffold586 WUBlastX LTR_Pao 187981 188295 338 - . . scaffold586 WUBlastX LTR_Pao 188005 188514 42 - . . scaffold586 GLEAN promoter 197053 198052 0.776736 + . ID=CGI_10018002; scaffold586 TRF Tandem_Repeat 197133 197191 109 + . . scaffold586 WUBlastX LTR_Pao 197587 197958 164 - . . scaffold586 WUBlastX LTR_Pao 197734 197958 209 - . . scaffold586 WUBlastX LTR_Pao 197734 198018 126 - . . scaffold586 GLEAN mRNA 198053 203234 0.776736 + . ID=CGI_10018002; scaffold586 TRF Tandem_Repeat 203263 203529 165 + . . scaffold586 TRF Tandem_Repeat 205539 205622 98 + . . scaffold586 WUBlastX LINE_RTE-X 205868 207349 245 - . . scaffold586 WUBlastX LINE_RTE-X 206102 207346 440 - . . scaffold586 GLEAN promoter 208993 209992 0.999949 + . ID=CGI_10018003; scaffold586 TRF Tandem_Repeat 209761 209821 122 + . . scaffold586 GLEAN mRNA 209993 217988 0.999949 + . ID=CGI_10018003; scaffold586 TRF Tandem_Repeat 211195 211236 50 + . . scaffold586 TRF Tandem_Repeat 217165 217324 207 + . . scaffold586 GLEAN mRNA 220232 240872 0.99922 - . ID=CGI_10018004; scaffold586 TRF Tandem_Repeat 230639 230760 149 + . . scaffold586 TRF Tandem_Repeat 230639 230813 183 + . . scaffold586 TRF Tandem_Repeat 231393 231430 76 + . . scaffold586 TRF Tandem_Repeat 232871 233078 149 + . . scaffold586 TRF Tandem_Repeat 239541 239640 116 + . . scaffold586 GLEAN promoter 240873 241872 0.99922 - . ID=CGI_10018004; scaffold586 TRF Tandem_Repeat 242808 242876 131 + . . scaffold586 TRF Tandem_Repeat 251194 251232 78 + . . scaffold586 TRF Tandem_Repeat 263483 263824 549 + . . scaffold586 TRF Tandem_Repeat 265014 265370 579 + . . scaffold586 TRF Tandem_Repeat 276131 276173 86 + . . scaffold586 GLEAN promoter 282428 283427 0.944267 + . ID=CGI_10018005; scaffold586 TRF Tandem_Repeat 282900 282948 62 + . . scaffold586 GLEAN mRNA 283428 295869 0.944267 + . ID=CGI_10018005; scaffold586 TRF Tandem_Repeat 288633 288676 88 + . . scaffold586 GLEAN promoter 295775 296774 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 296318 296344 54 + . . scaffold586 GLEAN mRNA 296775 343900 0.999471 + . ID=CGI_10018006; scaffold586 TRF Tandem_Repeat 298719 299575 1245 + . . scaffold586 TRF Tandem_Repeat 301248 301300 106 + . . scaffold586 TRF Tandem_Repeat 307371 309672 3564 + . . scaffold586 TRF Tandem_Repeat 307371 309672 3644 + . . scaffold586 TRF Tandem_Repeat 312318 312381 128 + . . scaffold586 TRF Tandem_Repeat 316235 316276 84 + . . scaffold586 TRF Tandem_Repeat 340483 340528 83 + . . scaffold586 TRF Tandem_Repeat 343059 343280 175 + . . scaffold586 TRF Tandem_Repeat 353110 353143 68 + . . scaffold586 GLEAN promoter 359889 360888 0.997555 + . ID=CGI_10018007; scaffold586 GLEAN mRNA 360889 435903 0.997555 + . ID=CGI_10018007; scaffold586 TRF Tandem_Repeat 370537 370588 104 + . . scaffold586 TRF Tandem_Repeat 397992 398036 81 + . . scaffold586 TRF Tandem_Repeat 398512 398549 67 + . . scaffold586 TRF Tandem_Repeat 401646 401718 112 + . . scaffold586 TRF Tandem_Repeat 401855 401892 67 + . . scaffold586 TRF Tandem_Repeat 401985 402022 76 + . . scaffold586 TRF Tandem_Repeat 413682 413744 126 + . . scaffold586 TRF Tandem_Repeat 415468 415621 256 + . . scaffold586 TRF Tandem_Repeat 416650 416679 60 + . . scaffold586 TRF Tandem_Repeat 426002 426052 102 + . . scaffold586 TRF Tandem_Repeat 428488 428548 99 + . . scaffold586 TRF Tandem_Repeat 428488 428548 86 + . . scaffold586 TRF Tandem_Repeat 433863 433898 72 + . . scaffold586 TRF Tandem_Repeat 434184 434442 292 + . . scaffold586 TRF Tandem_Repeat 439574 439841 214 + . . scaffold586 TRF Tandem_Repeat 439883 440477 610 + . . scaffold586 TRF Tandem_Repeat 439884 440477 522 + . . scaffold586 TRF Tandem_Repeat 440857 441349 482 + . . scaffold586 GLEAN mRNA 448256 475873 0.905445 - . ID=CGI_10018008; scaffold586 TRF Tandem_Repeat 449372 449397 52 + . . scaffold586 WUBlastX DNA_TcMar-Tc1 459342 459683 34 + . . scaffold586 WUBlastX DNA_TcMar-Tc1 459632 460252 380 + . . scaffold586 WUBlastX LTR_Ngaro 464238 464426 23 + . . scaffold586 WUBlastX LTR_Ngaro 464435 464527 22 + . . scaffold586 WUBlastX LTR_Ngaro 464733 464888 33 + . . scaffold586 TRF Tandem_Repeat 465543 465645 64 + . . scaffold586 TRF Tandem_Repeat 474614 474648 54 + . . scaffold586 GLEAN promoter 475874 476873 0.905445 - . ID=CGI_10018008; scaffold586 GLEAN mRNA 477383 483069 0.96106 - . ID=CGI_10018009; scaffold586 TRF Tandem_Repeat 477594 477869 288 + . . scaffold586 TRF Tandem_Repeat 477684 478183 718 + . . scaffold586 GLEAN promoter 483070 484069 0.96106 - . ID=CGI_10018009; scaffold586 TRF Tandem_Repeat 488226 488342 200 + . . scaffold586 TRF Tandem_Repeat 488394 488487 89 + . . scaffold586 TRF Tandem_Repeat 489143 489281 84 + . . scaffold586 WUBlastX LTR_Ngaro 496061 496702 168 - . . scaffold586 WUBlastX LTR_Ngaro 496064 497062 115 - . . scaffold586 TRF Tandem_Repeat 497237 497261 50 + . . scaffold586 TRF Tandem_Repeat 510527 510736 268 + . . scaffold586 WUBlastX LTR_Ngaro 512808 513380 171 - . . scaffold586 WUBlastX LTR_Ngaro 513344 513805 50 - . . scaffold586 WUBlastX LTR_Ngaro 513371 513727 59 - . . scaffold586 WUBlastX LTR_Ngaro 513745 513864 29 - . . scaffold586 WUBlastX LTR_Ngaro 513852 514163 79 - . . scaffold586 WUBlastX LTR_Ngaro 514025 514525 82 - . . scaffold586 WUBlastX LTR_Ngaro 514160 514540 233 - . . scaffold586 WUBlastX LTR_Ngaro 514531 514926 212 - . . scaffold586 WUBlastX LTR_Ngaro 514950 515294 173 - . . scaffold586 WUBlastX LTR_Ngaro 515723 516115 111 - . . scaffold586 GLEAN mRNA 516345 525055 0.55711 - . ID=CGI_10018010; scaffold586 GLEAN promoter 525056 526055 0.55711 - . ID=CGI_10018010; scaffold587 TRF Tandem_Repeat 781 810 60 + . . scaffold587 GLEAN mRNA 1966 7737 0.999375 - . ID=CGI_10006887; scaffold587 WUBlastX DNA_TcMar-Stowa 2562 2816 60 + . . scaffold587 WUBlastX DNA_TcMar-ISRm1 2789 3472 104 + . . scaffold587 WUBlastX DNA_TcMar-ISRm1 3017 3547 113 + . . scaffold587 TRF Tandem_Repeat 5030 5076 67 + . . scaffold587 GLEAN promoter 7738 8737 0.999375 - . ID=CGI_10006887; scaffold587 GLEAN mRNA 7921 23225 0.999675 - . ID=CGI_10006888; scaffold587 TRF Tandem_Repeat 8536 8581 92 + . . scaffold587 TRF Tandem_Repeat 10230 10282 88 + . . scaffold587 TRF Tandem_Repeat 10553 10592 80 + . . scaffold587 TRF Tandem_Repeat 13487 14261 1234 + . . scaffold587 TRF Tandem_Repeat 15300 15412 172 + . . scaffold587 TRF Tandem_Repeat 16462 17055 565 + . . scaffold587 TRF Tandem_Repeat 21067 21111 90 + . . scaffold587 TRF Tandem_Repeat 21783 22486 989 + . . scaffold587 GLEAN promoter 22771 23770 0.998735 + . ID=CGI_10006889; scaffold587 GLEAN promoter 23226 24225 0.999675 - . ID=CGI_10006888; scaffold587 GLEAN mRNA 23771 63058 0.998735 + . ID=CGI_10006889; scaffold587 GLEAN promoter 67066 68065 0.999436 + . ID=CGI_10006890; scaffold587 GLEAN mRNA 68066 72030 0.999436 + . ID=CGI_10006890; scaffold587 TRF Tandem_Repeat 68640 68685 92 + . . scaffold587 WUBlastX LINE_CR1-L2 73255 75051 471 - . . scaffold587 WUBlastX LINE_L2 74323 75219 295 - . . scaffold587 WUBlastX LINE_L2 74332 75069 499 - . . scaffold587 GLEAN promoter 75516 76515 0.101135 + . ID=CGI_10006891; scaffold587 GLEAN mRNA 76516 81078 0.101135 + . ID=CGI_10006891; scaffold587 TRF Tandem_Repeat 98471 98524 108 + . . scaffold587 TRF Tandem_Repeat 98663 98702 62 + . . scaffold587 TRF Tandem_Repeat 104393 104435 86 + . . scaffold587 GLEAN promoter 105168 106167 0.701684 + . ID=CGI_10006892; scaffold587 TRF Tandem_Repeat 106128 106167 80 + . . scaffold587 GLEAN mRNA 106168 127861 0.701684 + . ID=CGI_10006892; scaffold587 TRF Tandem_Repeat 108158 108188 53 + . . scaffold587 TRF Tandem_Repeat 110464 110498 70 + . . scaffold587 WUBlastX LINE_L2 110704 110871 77 - . . scaffold587 TRF Tandem_Repeat 115477 115520 88 + . . scaffold587 TRF Tandem_Repeat 122479 122534 112 + . . scaffold587 TRF Tandem_Repeat 145787 145885 99 + . . scaffold587 GLEAN promoter 151751 152750 0.154448 + . ID=CGI_10006893; scaffold587 GLEAN mRNA 152751 157489 0.154448 + . ID=CGI_10006893; scaffold587 GLEAN promoter 159275 160274 0.999899 + . ID=CGI_10006894; scaffold587 TRF Tandem_Repeat 159371 159413 86 + . . scaffold587 TRF Tandem_Repeat 159993 160042 84 + . . scaffold587 GLEAN mRNA 160275 163582 0.999899 + . ID=CGI_10006894; scaffold587 TRF Tandem_Repeat 162681 162804 59 + . . scaffold588 GLEAN mRNA 202 829 0.999885 - . ID=CGI_10016207; scaffold588 GLEAN promoter 830 1829 0.999885 - . ID=CGI_10016207; scaffold588 WUBlastX LINE_RTE-X 5861 6475 85 - . . scaffold588 WUBlastX LINE_RTE-X 5864 6322 101 - . . scaffold588 WUBlastX LINE_RTE-X 6466 6666 69 - . . scaffold588 GLEAN promoter 6475 7474 0.999942 + . ID=CGI_10016208; scaffold588 WUBlastX LINE_RTE-X 6493 6639 71 - . . scaffold588 GLEAN mRNA 7475 24618 0.999942 + . ID=CGI_10016208; scaffold588 TRF Tandem_Repeat 11495 12233 802 + . . scaffold588 TRF Tandem_Repeat 20636 20675 80 + . . scaffold588 WUBlastX DNA_Harbinger 23030 23107 55 + . . scaffold588 WUBlastX DNA_Harbinger 23119 23352 178 + . . scaffold588 WUBlastX DNA_Harbinger 23307 23684 93 + . . scaffold588 WUBlastX DNA_Harbinger 23489 23953 112 + . . scaffold588 TRF Tandem_Repeat 25001 25069 138 + . . scaffold588 GLEAN promoter 26826 27825 0.701659 + . ID=CGI_10016209; scaffold588 GLEAN mRNA 27826 75048 0.701659 + . ID=CGI_10016209; scaffold588 TRF Tandem_Repeat 41422 41462 82 + . . scaffold588 TRF Tandem_Repeat 43842 43886 72 + . . scaffold588 TRF Tandem_Repeat 46052 46093 84 + . . scaffold588 TRF Tandem_Repeat 49234 49276 50 + . . scaffold588 TRF Tandem_Repeat 67275 67312 76 + . . scaffold588 WUBlastX LINE_L2 71973 72635 38 + . . scaffold588 WUBlastX LINE_L2 72036 72578 264 + . . scaffold588 WUBlastX LINE_Penelope 77384 77659 80 - . . scaffold588 WUBlastX LINE_Penelope 77652 78224 219 - . . scaffold588 WUBlastX LINE_Penelope 79112 80422 603 - . . scaffold588 WUBlastX LINE_Penelope 79745 80551 81 - . . scaffold588 WUBlastX LINE_Penelope 80764 81462 30 - . . scaffold588 WUBlastX LINE_Penelope 82634 82888 55 - . . scaffold588 WUBlastX DNA_TcMar-Marin 83272 83649 155 + . . scaffold588 WUBlastX DNA_TcMar-Marin 83712 84116 238 + . . scaffold588 WUBlastX LINE_Penelope 102902 103078 24 - . . scaffold588 WUBlastX LINE_Penelope 102951 103049 27 - . . scaffold588 WUBlastX LINE_Penelope 102973 103224 33 - . . scaffold588 WUBlastX LINE_Penelope 103013 103177 41 - . . scaffold588 WUBlastX LINE_Penelope 103057 103269 121 - . . scaffold588 WUBlastX LINE_Penelope 103493 103891 66 - . . scaffold588 WUBlastX LINE_Penelope 103571 103783 71 - . . scaffold588 WUBlastX LINE_L1-Tx1 105974 106708 177 + . . scaffold588 WUBlastX LINE_L1 106502 106747 31 + . . scaffold588 GLEAN mRNA 115628 115936 0.999989 - . ID=CGI_10016210; scaffold588 GLEAN promoter 115937 116936 0.999989 - . ID=CGI_10016210; scaffold588 WUBlastX LINE_Penelope 116537 116644 24 - . . scaffold588 WUBlastX LINE_Penelope 116566 116676 29 - . . scaffold588 WUBlastX LINE_Penelope 116640 117404 202 - . . scaffold588 GLEAN promoter 131834 132833 0.82921 + . ID=CGI_10016211; scaffold588 GLEAN mRNA 132834 155339 0.82921 + . ID=CGI_10016211; scaffold588 WUBlastX LINE_Penelope 134415 134600 39 - . . scaffold588 WUBlastX DNA_Harbinger 135001 135852 440 + . . scaffold588 WUBlastX DNA_Harbinger 135034 136002 338 + . . scaffold588 WUBlastX LINE_Penelope 145921 146382 45 - . . scaffold588 WUBlastX LINE_Penelope 145993 146373 203 - . . scaffold588 WUBlastX LINE_Penelope 146002 146439 84 - . . scaffold588 WUBlastX LINE_Penelope 146429 146662 66 - . . scaffold588 WUBlastX LINE_Penelope 146468 146650 81 - . . scaffold588 WUBlastX LINE_L1-Tx1 150920 151417 106 - . . scaffold588 WUBlastX LINE_L1 151151 151471 75 - . . scaffold588 WUBlastX LINE_L1 151530 152063 93 - . . scaffold588 WUBlastX LINE_L1-Tx1 151758 152042 183 - . . scaffold588 WUBlastX LINE_L1 151788 152114 97 - . . scaffold588 GLEAN promoter 154588 155587 1 + . ID=CGI_10016212; scaffold588 GLEAN mRNA 155588 155944 1 + . ID=CGI_10016212; scaffold588 GLEAN mRNA 157039 162894 0.449004 - . ID=CGI_10016213; scaffold588 GLEAN promoter 162895 163894 0.449004 - . ID=CGI_10016213; scaffold588 TRF Tandem_Repeat 169869 170038 268 + . . scaffold588 TRF Tandem_Repeat 171195 171249 92 + . . scaffold588 TRF Tandem_Repeat 173427 173502 136 + . . scaffold588 TRF Tandem_Repeat 173427 173502 104 + . . scaffold588 TRF Tandem_Repeat 174480 174533 108 + . . scaffold588 GLEAN mRNA 179675 183423 0.478591 - . ID=CGI_10016214; scaffold588 GLEAN promoter 183424 184423 0.478591 - . ID=CGI_10016214; scaffold588 TRF Tandem_Repeat 186550 186598 98 + . . scaffold588 TRF Tandem_Repeat 186629 186659 62 + . . scaffold588 GLEAN promoter 190822 191821 0.935988 + . ID=CGI_10016215; scaffold588 GLEAN mRNA 191822 193979 0.935988 + . ID=CGI_10016215; scaffold588 TRF Tandem_Repeat 198841 198945 105 + . . scaffold588 TRF Tandem_Repeat 200129 200221 70 + . . scaffold588 TRF Tandem_Repeat 207372 207396 50 + . . scaffold588 TRF Tandem_Repeat 210474 210512 78 + . . scaffold588 GLEAN mRNA 212147 212392 0.999372 - . ID=CGI_10016216; scaffold588 GLEAN promoter 212393 213392 0.999372 - . ID=CGI_10016216; scaffold588 TRF Tandem_Repeat 213664 213716 106 + . . scaffold588 TRF Tandem_Repeat 214487 214558 144 + . . scaffold588 GLEAN mRNA 236852 247074 0.99937 - . ID=CGI_10016217; scaffold588 TRF Tandem_Repeat 237343 237376 50 + . . scaffold588 TRF Tandem_Repeat 242048 242101 63 + . . scaffold588 TRF Tandem_Repeat 244243 244416 246 + . . scaffold588 GLEAN promoter 247075 248074 0.99937 - . ID=CGI_10016217; scaffold588 TRF Tandem_Repeat 248183 248212 60 + . . scaffold588 GLEAN mRNA 248679 258989 0.997309 - . ID=CGI_10016218; scaffold588 TRF Tandem_Repeat 257882 257933 61 + . . scaffold588 TRF Tandem_Repeat 257882 257933 61 + . . scaffold588 TRF Tandem_Repeat 257882 257933 61 + . . scaffold588 TRF Tandem_Repeat 257883 257953 56 + . . scaffold588 TRF Tandem_Repeat 257883 257945 54 + . . scaffold588 TRF Tandem_Repeat 258808 258855 71 + . . scaffold588 GLEAN promoter 258990 259989 0.997309 - . ID=CGI_10016218; scaffold588 TRF Tandem_Repeat 260140 260182 77 + . . scaffold588 GLEAN mRNA 265419 289236 0.862886 - . ID=CGI_10016219; scaffold588 TRF Tandem_Repeat 271412 271485 112 + . . scaffold588 TRF Tandem_Repeat 271415 271491 118 + . . scaffold588 TRF Tandem_Repeat 280635 280698 65 + . . scaffold588 GLEAN promoter 289237 290236 0.862886 - . ID=CGI_10016219; scaffold588 TRF Tandem_Repeat 292159 292340 321 + . . scaffold588 TRF Tandem_Repeat 298605 298652 66 + . . scaffold588 GLEAN mRNA 303785 304885 0.694423 - . ID=CGI_10016220; scaffold588 GLEAN promoter 304886 305885 0.694423 - . ID=CGI_10016220; scaffold588 TRF Tandem_Repeat 308350 308406 114 + . . scaffold588 TRF Tandem_Repeat 346353 346414 106 + . . scaffold588 TRF Tandem_Repeat 358165 358254 92 + . . scaffold588 GLEAN promoter 361323 362322 1 + . ID=CGI_10016221; scaffold588 GLEAN mRNA 362323 366328 1 + . ID=CGI_10016221; scaffold588 GLEAN mRNA 367299 377978 0.183595 - . ID=CGI_10016222; scaffold588 TRF Tandem_Repeat 368391 368463 146 + . . scaffold588 GLEAN promoter 377979 378978 0.183595 - . ID=CGI_10016222; scaffold588 GLEAN promoter 382824 383823 1 + . ID=CGI_10016223; scaffold588 GLEAN mRNA 383824 384378 1 + . ID=CGI_10016223; scaffold588 GLEAN promoter 388308 389307 0.999672 + . ID=CGI_10016224; scaffold588 TRF Tandem_Repeat 389050 389084 70 + . . scaffold588 GLEAN mRNA 389308 390468 0.999672 + . ID=CGI_10016224; scaffold588 TRF Tandem_Repeat 389846 389927 83 + . . scaffold588 TRF Tandem_Repeat 390022 390197 244 + . . scaffold588 TRF Tandem_Repeat 390022 390197 280 + . . scaffold588 TRF Tandem_Repeat 390145 390197 55 + . . scaffold588 GLEAN promoter 391510 392509 0.983024 + . ID=CGI_10016225; scaffold588 GLEAN mRNA 392510 405723 0.983024 + . ID=CGI_10016225; scaffold588 TRF Tandem_Repeat 396249 396982 881 + . . scaffold588 WUBlastX LTR_Gypsy 399441 399527 25 - . . scaffold588 WUBlastX LTR_Gypsy 399981 401558 253 - . . scaffold588 WUBlastX LTR_Gypsy-Cigr 400920 403151 1104 - . . scaffold588 TRF Tandem_Repeat 403197 403223 54 + . . scaffold588 WUBlastX LINE_RTE-X 408002 409492 151 - . . scaffold588 WUBlastX LINE_RTE-X 408245 409504 258 - . . scaffold588 WUBlastX LINE_RTE-X 408515 410203 160 - . . scaffold588 WUBlastX LINE_RTE 409934 410251 39 - . . scaffold588 WUBlastX LINE_Proto2 410254 411273 51 - . . scaffold588 WUBlastX LINE_Proto2 410428 411051 60 - . . scaffold588 WUBlastX LINE_RTE-X 410722 411051 61 - . . scaffold588 WUBlastX LINE_RTE-X 410803 411126 65 - . . scaffold588 WUBlastX LINE_RTE-X 410803 411051 69 - . . scaffold588 GLEAN mRNA 411337 412062 0.999996 - . ID=CGI_10016226; scaffold588 GLEAN promoter 412063 413062 0.999996 - . ID=CGI_10016226; scaffold588 GLEAN promoter 412724 413723 0.849231 + . ID=CGI_10016228; scaffold588 GLEAN mRNA 412956 413480 0.996192 - . ID=CGI_10016227; scaffold588 GLEAN promoter 413481 414480 0.996192 - . ID=CGI_10016227; scaffold588 GLEAN mRNA 413724 423614 0.849231 + . ID=CGI_10016228; scaffold588 WUBlastX LTR_Gypsy 414310 415284 57 + . . scaffold588 WUBlastX LTR_DIRS 414466 415206 119 + . . scaffold588 WUBlastX LTR_DIRS 414607 415302 388 + . . scaffold588 WUBlastX LTR_DIRS 415286 416479 409 + . . scaffold588 WUBlastX LTR_DIRS 416940 417866 453 + . . scaffold588 TRF Tandem_Repeat 425674 425709 54 + . . scaffold588 GLEAN promoter 427355 428354 0.692331 + . ID=CGI_10016229; scaffold588 GLEAN mRNA 428355 429507 0.692331 + . ID=CGI_10016229; scaffold588 GLEAN promoter 428728 429727 0.999991 + . ID=CGI_10016230; scaffold588 GLEAN mRNA 429728 442145 0.999991 + . ID=CGI_10016230; scaffold588 TRF Tandem_Repeat 442557 442607 61 + . . scaffold588 GLEAN mRNA 443789 460450 0.650923 - . ID=CGI_10016231; scaffold588 GLEAN promoter 444502 445501 0.999675 + . ID=CGI_10016232; scaffold588 GLEAN mRNA 445502 460975 0.999675 + . ID=CGI_10016232; scaffold588 GLEAN promoter 460451 461166 0.650923 - . ID=CGI_10016231; scaffold589 TRF Tandem_Repeat 8615 8775 322 + . . scaffold589 WUBlastX DNA_TcMar-Tc1 26902 27792 363 + . . scaffold589 GLEAN mRNA 32024 32446 0.997136 - . ID=CGI_10003089; scaffold589 GLEAN promoter 32447 33446 0.997136 - . ID=CGI_10003089; scaffold589 GLEAN mRNA 32647 33333 0.747146 - . ID=CGI_10003090; scaffold589 GLEAN promoter 33334 34333 0.747146 - . ID=CGI_10003090; scaffold589 WUBlastX DNA_TcMar-Tc1 47053 48093 413 + . . scaffold589 WUBlastX DNA_IS4EU 49509 50033 65 + . . scaffold589 WUBlastX DNA_IS4EU 50424 50738 53 + . . scaffold589 WUBlastX DNA_IS4EU 50589 51284 77 + . . scaffold589 WUBlastX DNA_IS4EU 50742 51284 103 + . . scaffold589 WUBlastX DNA_Kolobok-IS4 50901 51284 110 + . . scaffold589 WUBlastX DNA_IS4EU 51069 51284 127 + . . scaffold589 GLEAN mRNA 58019 58354 0.618241 - . ID=CGI_10003091; scaffold589 GLEAN promoter 58355 59354 0.618241 - . ID=CGI_10003091; scaffold59 GLEAN promoter 1 134 0.999991 + . ID=CGI_10011269; scaffold59 GLEAN mRNA 135 9269 0.999991 + . ID=CGI_10011269; scaffold59 TRF Tandem_Repeat 1721 1774 108 + . . scaffold59 TRF Tandem_Repeat 3519 3573 110 + . . scaffold59 TRF Tandem_Repeat 8568 8593 52 + . . scaffold59 TRF Tandem_Repeat 19620 19646 54 + . . scaffold59 GLEAN mRNA 20880 26714 0.999999 - . ID=CGI_10011270; scaffold59 GLEAN promoter 26715 27714 0.999999 - . ID=CGI_10011270; scaffold59 GLEAN mRNA 30587 33888 1 - . ID=CGI_10011271; scaffold59 GLEAN promoter 33889 34888 1 - . ID=CGI_10011271; scaffold59 TRF Tandem_Repeat 39929 39971 86 + . . scaffold59 TRF Tandem_Repeat 42699 42747 98 + . . scaffold59 TRF Tandem_Repeat 65708 66077 386 + . . scaffold59 TRF Tandem_Repeat 67004 67154 139 + . . scaffold59 TRF Tandem_Repeat 67035 67154 177 + . . scaffold59 GLEAN mRNA 68986 78873 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LTR_Ngaro 70640 71383 329 - . . scaffold59 WUBlastX LTR_Ngaro 71383 71637 37 - . . scaffold59 WUBlastX LTR_Ngaro 71526 71690 106 - . . scaffold59 WUBlastX LTR_Ngaro 71689 73131 948 - . . scaffold59 WUBlastX LTR_Ngaro 73223 73879 160 - . . scaffold59 WUBlastX LTR_Ngaro 73403 74212 160 - . . scaffold59 GLEAN promoter 78874 79873 0.61656 - . ID=CGI_10011272; scaffold59 WUBlastX LINE_L1-Tx1 79779 79844 20 + . . scaffold59 WUBlastX LINE_L1-Tx1 79916 80281 137 + . . scaffold59 WUBlastX LINE_L1-Tx1 80270 80506 43 + . . scaffold59 WUBlastX LINE_L1-Tx1 80333 80683 128 + . . scaffold59 WUBlastX LINE_L1-Tx1 80656 80901 54 + . . scaffold59 WUBlastX LINE_L1 81029 81133 29 + . . scaffold59 TRF Tandem_Repeat 83416 83473 71 + . . scaffold59 TRF Tandem_Repeat 83416 83477 79 + . . scaffold59 TRF Tandem_Repeat 83416 83469 81 + . . scaffold59 WUBlastX DNA_Maverick 95666 96001 49 - . . scaffold59 WUBlastX DNA_Maverick 96728 97114 30 - . . scaffold59 WUBlastX DNA_Maverick 98211 98288 34 - . . scaffold59 TRF Tandem_Repeat 101907 102757 506 + . . scaffold59 TRF Tandem_Repeat 113507 114314 944 + . . scaffold59 TRF Tandem_Repeat 120772 121776 1403 + . . scaffold59 WUBlastX LINE_L2 129822 130058 62 - . . scaffold59 WUBlastX LINE_CR1-L2 130034 130120 40 - . . scaffold59 TRF Tandem_Repeat 131126 131468 498 + . . scaffold59 TRF Tandem_Repeat 131126 131468 498 + . . scaffold59 TRF Tandem_Repeat 131126 131468 498 + . . scaffold59 GLEAN mRNA 133529 134677 0.999661 - . ID=CGI_10011273; scaffold59 GLEAN promoter 134678 135677 0.999661 - . ID=CGI_10011273; scaffold59 TRF Tandem_Repeat 135539 135582 88 + . . scaffold59 GLEAN mRNA 139116 140294 0.412771 - . ID=CGI_10011274; scaffold59 GLEAN promoter 140295 141294 0.412771 - . ID=CGI_10011274; scaffold59 GLEAN mRNA 142446 143642 0.995672 - . ID=CGI_10011275; scaffold59 GLEAN promoter 143643 144642 0.995672 - . ID=CGI_10011275; scaffold59 GLEAN mRNA 146771 147886 0.570604 - . ID=CGI_10011276; scaffold59 GLEAN promoter 147887 148886 0.570604 - . ID=CGI_10011276; scaffold59 TRF Tandem_Repeat 150395 150419 50 + . . scaffold59 TRF Tandem_Repeat 164462 164552 146 + . . scaffold59 WUBlastX LTR_Pao 164608 164676 24 + . . scaffold59 WUBlastX LTR_Pao 164801 165751 492 + . . scaffold59 WUBlastX LTR_Pao 165750 165941 163 + . . scaffold59 WUBlastX LTR_Pao 165925 166452 284 + . . scaffold59 WUBlastX LTR_Pao 167686 169194 654 + . . scaffold59 WUBlastX LTR_Pao 168749 169747 499 + . . scaffold59 TRF Tandem_Repeat 175363 175397 70 + . . scaffold59 TRF Tandem_Repeat 175988 176038 52 + . . scaffold59 TRF Tandem_Repeat 185848 185886 78 + . . scaffold59 TRF Tandem_Repeat 193417 193461 90 + . . scaffold59 WUBlastX LINE_L1 193629 194171 23 - . . scaffold59 WUBlastX LINE_L1-Tx1 193698 194135 51 - . . scaffold59 WUBlastX LINE_L1-Tx1 194602 194655 23 - . . scaffold59 TRF Tandem_Repeat 200156 200222 71 + . . scaffold59 TRF Tandem_Repeat 202849 202887 78 + . . scaffold59 WUBlastX LINE_CR1-L2 211609 212217 37 - . . scaffold59 WUBlastX LINE_CR1-L2 211708 212217 39 - . . scaffold59 WUBlastX LINE_CR1 211999 212217 54 - . . scaffold59 WUBlastX LINE_CR1-L2 212032 212217 69 - . . scaffold59 WUBlastX LINE_CR1 212316 212369 30 - . . scaffold59 WUBlastX LINE_CR1-L2 212377 212415 28 - . . scaffold59 WUBlastX LINE_CR1 212377 212442 22 - . . scaffold59 WUBlastX LINE_CR1 212380 212427 24 - . . scaffold59 WUBlastX LTR_Gypsy-Cigr 213593 214063 68 + . . scaffold59 GLEAN mRNA 214884 227564 0.932002 - . ID=CGI_10011277; scaffold59 TRF Tandem_Repeat 219515 220208 1055 + . . scaffold59 TRF Tandem_Repeat 221566 221649 62 + . . scaffold59 TRF Tandem_Repeat 221970 222326 454 + . . scaffold59 TRF Tandem_Repeat 221970 222326 483 + . . scaffold59 TRF Tandem_Repeat 225072 225105 59 + . . scaffold59 WUBlastX LTR_Gypsy 226926 227204 42 - . . scaffold59 GLEAN promoter 227565 228564 0.932002 - . ID=CGI_10011277; scaffold59 TRF Tandem_Repeat 228681 228708 56 + . . scaffold59 TRF Tandem_Repeat 229806 229855 82 + . . scaffold59 GLEAN mRNA 230821 243525 0.988711 - . ID=CGI_10011278; scaffold59 TRF Tandem_Repeat 232799 232848 100 + . . scaffold59 WUBlastX RC_Helitron 238536 239303 263 + . . scaffold59 WUBlastX RC_Helitron 239331 239636 74 + . . scaffold59 WUBlastX RC_Helitron 239340 239564 104 + . . scaffold59 GLEAN promoter 242445 243444 0.499819 + . ID=CGI_10011279; scaffold59 GLEAN mRNA 243445 247440 0.499819 + . ID=CGI_10011279; scaffold59 GLEAN promoter 243526 244525 0.988711 - . ID=CGI_10011278; scaffold59 GLEAN promoter 249866 250865 0.499902 + . ID=CGI_10011280; scaffold59 GLEAN mRNA 250866 262592 0.499902 + . ID=CGI_10011280; scaffold59 TRF Tandem_Repeat 263853 263922 61 + . . scaffold59 TRF Tandem_Repeat 275529 275667 92 + . . scaffold591 WUBlastX LINE_RTE-BovB 5034 5153 20 + . . scaffold591 WUBlastX LINE_L2 5334 5462 24 + . . scaffold591 WUBlastX LINE_CR1 5871 5975 21 + . . scaffold591 WUBlastX LINE_L2 5905 6471 60 + . . scaffold591 WUBlastX LINE_RTE-X 6073 6474 131 + . . scaffold591 WUBlastX LINE_Proto2 6492 6776 90 + . . scaffold591 WUBlastX LINE_Jockey 6549 7322 75 + . . scaffold591 WUBlastX LINE_L2-Hydra 7306 7407 38 + . . scaffold591 WUBlastX LINE_Penelope 26579 27124 76 + . . scaffold591 GLEAN mRNA 33368 36062 1 - . ID=CGI_10027552; scaffold591 GLEAN promoter 36063 37062 1 - . ID=CGI_10027552; scaffold591 WUBlastX RC_Helitron 36715 39180 588 - . . scaffold591 WUBlastX RC_Helitron 39187 41280 131 - . . scaffold591 WUBlastX RC_Helitron 39193 40446 267 - . . scaffold591 WUBlastX RC_Helitron 39193 40149 334 - . . scaffold591 WUBlastX RC_Helitron 39199 40794 223 - . . scaffold591 WUBlastX DNA_Helitron 41296 41904 39 - . . scaffold591 TRF Tandem_Repeat 45050 45078 58 + . . scaffold591 TRF Tandem_Repeat 45606 45651 92 + . . scaffold591 TRF Tandem_Repeat 54588 54646 118 + . . scaffold591 WUBlastX LINE_CR1-L2 71166 71258 34 - . . scaffold591 WUBlastX LINE_CR1-L2 71166 71396 20 - . . scaffold591 WUBlastX LINE_L2 71317 71583 76 - . . scaffold591 WUBlastX LINE_L2 71597 71959 83 - . . scaffold591 WUBlastX LINE_CR1-L2 71690 71965 107 - . . scaffold591 WUBlastX LINE_L2 71964 72206 162 - . . scaffold591 WUBlastX LINE_CR1 71964 72293 67 - . . scaffold591 WUBlastX DNA_hAT-Hobo 73925 74071 73 - . . scaffold591 TRF Tandem_Repeat 74142 74182 82 + . . scaffold591 GLEAN mRNA 75912 76208 0.618241 - . ID=CGI_10027553; scaffold591 GLEAN promoter 76209 77208 0.618241 - . ID=CGI_10027553; scaffold591 WUBlastX LTR_DIRS 76353 76979 185 + . . scaffold591 WUBlastX LTR_DIRS 76494 77060 201 + . . scaffold591 WUBlastX LTR_DIRS 76542 76979 230 + . . scaffold591 WUBlastX LTR_DIRS 77695 77808 57 + . . scaffold591 WUBlastX LTR_DIRS 77707 77865 50 + . . scaffold591 WUBlastX LTR_DIRS 77921 79372 312 + . . scaffold591 WUBlastX LTR_DIRS 78491 79372 374 + . . scaffold591 WUBlastX LTR_DIRS 79377 80141 249 + . . scaffold591 WUBlastX LTR_DIRS 79509 80159 295 + . . scaffold591 WUBlastX LTR_DIRS 80138 80464 197 + . . scaffold591 TRF Tandem_Repeat 85614 85672 66 + . . scaffold591 TRF Tandem_Repeat 87600 87673 121 + . . scaffold591 WUBlastX LTR_Gypsy 88191 89120 213 - . . scaffold591 WUBlastX LTR_Gypsy 88506 89159 249 - . . scaffold591 WUBlastX LTR_Gypsy 88605 89120 283 - . . scaffold591 WUBlastX LTR_Gypsy 89114 89317 224 - . . scaffold591 TRF Tandem_Repeat 95855 96084 53 + . . scaffold591 TRF Tandem_Repeat 95855 96083 221 + . . scaffold591 TRF Tandem_Repeat 95886 96083 231 + . . scaffold591 TRF Tandem_Repeat 100523 100736 105 + . . scaffold591 TRF Tandem_Repeat 100523 100739 167 + . . scaffold591 GLEAN promoter 101447 102446 0.352187 + . ID=CGI_10027555; scaffold591 GLEAN mRNA 101702 102166 0.996819 - . ID=CGI_10027554; scaffold591 WUBlastX LTR_Pao 101759 102361 55 - . . scaffold591 WUBlastX LTR_Gypsy 102080 102481 48 - . . scaffold591 GLEAN promoter 102167 103166 0.996819 - . ID=CGI_10027554; scaffold591 GLEAN mRNA 102447 114989 0.352187 + . ID=CGI_10027555; scaffold591 TRF Tandem_Repeat 105123 105187 130 + . . scaffold591 TRF Tandem_Repeat 106139 106187 82 + . . scaffold591 TRF Tandem_Repeat 111261 111357 117 + . . scaffold591 TRF Tandem_Repeat 111530 111567 58 + . . scaffold591 GLEAN mRNA 113692 114787 1 - . ID=CGI_10027556; scaffold591 GLEAN promoter 114788 115787 1 - . ID=CGI_10027556; scaffold591 GLEAN promoter 114828 115827 0.972887 + . ID=CGI_10027557; scaffold591 GLEAN mRNA 115828 127477 0.972887 + . ID=CGI_10027557; scaffold591 TRF Tandem_Repeat 122465 122538 85 + . . scaffold591 TRF Tandem_Repeat 122468 122533 105 + . . scaffold591 TRF Tandem_Repeat 123034 123074 82 + . . scaffold591 TRF Tandem_Repeat 125478 125544 89 + . . scaffold591 TRF Tandem_Repeat 127536 127570 52 + . . scaffold591 TRF Tandem_Repeat 132275 132348 148 + . . scaffold591 TRF Tandem_Repeat 159880 159962 166 + . . scaffold591 TRF Tandem_Repeat 170899 170952 67 + . . scaffold591 TRF Tandem_Repeat 170902 170947 67 + . . scaffold591 TRF Tandem_Repeat 177267 178177 656 + . . scaffold591 TRF Tandem_Repeat 183374 183416 86 + . . scaffold591 TRF Tandem_Repeat 189602 189665 92 + . . scaffold591 TRF Tandem_Repeat 189776 189825 100 + . . scaffold591 TRF Tandem_Repeat 193022 193063 84 + . . scaffold591 GLEAN promoter 196932 197931 0.539808 + . ID=CGI_10027558; scaffold591 GLEAN mRNA 197932 206820 0.539808 + . ID=CGI_10027558; scaffold591 TRF Tandem_Repeat 210249 210371 62 + . . scaffold591 TRF Tandem_Repeat 213657 213701 90 + . . scaffold591 TRF Tandem_Repeat 219871 219925 92 + . . scaffold591 TRF Tandem_Repeat 219950 220770 1365 + . . scaffold591 WUBlastX LTR_Gypsy 223108 224070 249 - . . scaffold591 GLEAN mRNA 224175 224468 0.561606 - . ID=CGI_10027559; scaffold591 WUBlastX LTR_Gypsy 224316 224933 38 - . . scaffold591 WUBlastX LTR_Gypsy 224433 225053 88 - . . scaffold591 GLEAN promoter 224469 225468 0.561606 - . ID=CGI_10027559; scaffold591 WUBlastX LTR_Gypsy 224547 225095 94 - . . scaffold591 WUBlastX LTR_Gypsy 227942 228826 188 - . . scaffold591 WUBlastX LTR_Gypsy 228101 228829 203 - . . scaffold591 WUBlastX LTR_Gypsy 228281 228844 210 - . . scaffold591 TRF Tandem_Repeat 229037 229367 287 + . . scaffold591 WUBlastX LTR_Gypsy 229380 229700 179 - . . scaffold591 WUBlastX LTR_Gypsy 229386 229910 118 - . . scaffold591 WUBlastX LTR_Gypsy 229386 229817 169 - . . scaffold591 GLEAN mRNA 230113 236021 0.993361 - . ID=CGI_10027560; scaffold591 TRF Tandem_Repeat 233674 233710 74 + . . scaffold591 GLEAN promoter 236022 237021 0.993361 - . ID=CGI_10027560; scaffold591 TRF Tandem_Repeat 244196 244241 74 + . . scaffold591 TRF Tandem_Repeat 247421 247530 84 + . . scaffold591 TRF Tandem_Repeat 249960 250076 118 + . . scaffold591 TRF Tandem_Repeat 250195 250225 62 + . . scaffold591 GLEAN mRNA 254619 265716 0.692851 - . ID=CGI_10027561; scaffold591 GLEAN promoter 265717 266716 0.692851 - . ID=CGI_10027561; scaffold591 GLEAN mRNA 266952 289677 0.460588 - . ID=CGI_10027562; scaffold591 TRF Tandem_Repeat 285691 285720 60 + . . scaffold591 WUBlastX DNA_TcMar-Tc1 287221 287718 151 + . . scaffold591 WUBlastX DNA_TcMar-Tc1 287726 288232 340 + . . scaffold591 GLEAN promoter 289678 290677 0.460588 - . ID=CGI_10027562; scaffold591 GLEAN mRNA 297873 298406 1 - . ID=CGI_10027563; scaffold591 GLEAN promoter 298407 299406 1 - . ID=CGI_10027563; scaffold591 TRF Tandem_Repeat 301243 301953 1000 + . . scaffold591 GLEAN mRNA 313345 336004 0.907463 - . ID=CGI_10027564; scaffold591 TRF Tandem_Repeat 329355 330556 1668 + . . scaffold591 GLEAN promoter 336005 337004 0.907463 - . ID=CGI_10027564; scaffold591 TRF Tandem_Repeat 349909 349951 79 + . . scaffold591 TRF Tandem_Repeat 350742 350784 59 + . . scaffold591 TRF Tandem_Repeat 350747 350787 55 + . . scaffold591 TRF Tandem_Repeat 350964 351962 1400 + . . scaffold591 TRF Tandem_Repeat 353095 353271 78 + . . scaffold591 TRF Tandem_Repeat 355373 355401 58 + . . scaffold591 TRF Tandem_Repeat 357127 357169 86 + . . scaffold591 TRF Tandem_Repeat 360921 360965 90 + . . scaffold591 TRF Tandem_Repeat 362143 362196 101 + . . scaffold591 TRF Tandem_Repeat 362673 362707 70 + . . scaffold591 TRF Tandem_Repeat 368531 368619 137 + . . scaffold591 TRF Tandem_Repeat 368617 368756 83 + . . scaffold591 WUBlastX DNA_MuDR 374806 375132 70 - . . scaffold591 GLEAN mRNA 374812 375012 0.988733 - . ID=CGI_10027565; scaffold591 WUBlastX DNA_MuDR 374845 375240 42 - . . scaffold591 GLEAN promoter 375013 376012 0.988733 - . ID=CGI_10027565; scaffold591 WUBlastX LTR_Gypsy-Troyk 382972 383217 84 + . . scaffold591 TRF Tandem_Repeat 383277 383392 53 + . . scaffold591 GLEAN promoter 388935 389934 1 + . ID=CGI_10027566; scaffold591 GLEAN mRNA 389935 393259 1 + . ID=CGI_10027566; scaffold591 GLEAN mRNA 395982 403953 0.815462 - . ID=CGI_10027567; scaffold591 GLEAN promoter 403954 404953 0.815462 - . ID=CGI_10027567; scaffold591 GLEAN promoter 409763 410762 0.99865 + . ID=CGI_10027568; scaffold591 GLEAN mRNA 410763 421409 0.99865 + . ID=CGI_10027568; scaffold591 GLEAN mRNA 422149 438158 1 - . ID=CGI_10027569; scaffold591 GLEAN promoter 438159 439158 1 - . ID=CGI_10027569; scaffold591 TRF Tandem_Repeat 439454 439510 114 + . . scaffold591 TRF Tandem_Repeat 439972 440117 62 + . . scaffold591 TRF Tandem_Repeat 440022 440116 64 + . . scaffold591 TRF Tandem_Repeat 440034 440095 88 + . . scaffold591 GLEAN promoter 444534 445533 1 + . ID=CGI_10027570; scaffold591 GLEAN mRNA 445534 451650 1 + . ID=CGI_10027570; scaffold591 TRF Tandem_Repeat 473026 473059 68 + . . scaffold591 TRF Tandem_Repeat 476389 476415 54 + . . scaffold591 WUBlastX DNA_Harbinger 487055 487174 33 - . . scaffold591 WUBlastX DNA_Harbinger 487155 487280 93 - . . scaffold591 WUBlastX DNA_Harbinger 487303 487473 42 - . . scaffold591 WUBlastX DNA_Harbinger 487303 487446 55 - . . scaffold591 WUBlastX DNA_Harbinger 487321 487527 26 - . . scaffold591 WUBlastX LINE_Penelope 488988 489242 33 - . . scaffold591 WUBlastX LINE_Penelope 489532 489681 77 - . . scaffold591 GLEAN mRNA 494316 495086 0.926254 - . ID=CGI_10027571; scaffold591 GLEAN promoter 495087 496086 0.926254 - . ID=CGI_10027571; scaffold591 GLEAN mRNA 499941 525575 0.696977 - . ID=CGI_10027572; scaffold591 TRF Tandem_Repeat 506646 506678 66 + . . scaffold591 TRF Tandem_Repeat 515934 516068 169 + . . scaffold591 WUBlastX LINE_L1 516313 516534 40 + . . scaffold591 WUBlastX LINE_L1 516531 516875 75 + . . scaffold591 WUBlastX LINE_L1 516618 516878 85 + . . scaffold591 TRF Tandem_Repeat 517611 517635 50 + . . scaffold591 GLEAN promoter 525576 526575 0.696977 - . ID=CGI_10027572; scaffold591 GLEAN mRNA 526334 529284 0.998678 - . ID=CGI_10027573; scaffold591 GLEAN promoter 529285 530284 0.998678 - . ID=CGI_10027573; scaffold591 TRF Tandem_Repeat 531693 532341 860 + . . scaffold591 WUBlastX DNA_PiggyBac 534664 535215 124 - . . scaffold591 WUBlastX DNA_PiggyBac 535250 535741 286 - . . scaffold591 WUBlastX DNA_PiggyBac 535764 535886 21 - . . scaffold591 WUBlastX DNA_PiggyBac 535813 536202 57 - . . scaffold591 WUBlastX DNA_PiggyBac 535897 536343 71 - . . scaffold591 WUBlastX DNA_PiggyBac 535909 536424 31 - . . scaffold591 WUBlastX DNA_PiggyBac 535909 536184 75 - . . scaffold591 WUBlastX DNA_Harbinger 536673 536807 31 + . . scaffold591 WUBlastX DNA_Harbinger 536806 537177 180 + . . scaffold591 WUBlastX DNA_Harbinger 536806 537288 155 + . . scaffold591 WUBlastX DNA_Harbinger 537256 537660 66 + . . scaffold591 WUBlastX DNA_Harbinger 537256 537345 76 + . . scaffold591 WUBlastX DNA_Harbinger 537338 537517 85 + . . scaffold591 GLEAN promoter 549671 550670 0.638045 + . ID=CGI_10027574; scaffold591 TRF Tandem_Repeat 550170 550258 124 + . . scaffold591 GLEAN mRNA 550671 550889 0.638045 + . ID=CGI_10027574; scaffold591 WUBlastX LTR_Gypsy 550689 551312 86 + . . scaffold591 WUBlastX LTR_ERVK 550818 551312 106 + . . scaffold591 WUBlastX LTR_ERVK 550947 551453 68 + . . scaffold591 WUBlastX LTR_Ngaro 552037 552153 42 - . . scaffold591 WUBlastX LTR_Ngaro 552182 553006 218 - . . scaffold591 WUBlastX LTR_Ngaro 552946 553209 133 - . . scaffold591 WUBlastX LTR_Ngaro 553178 554299 253 - . . scaffold591 WUBlastX LTR_Ngaro 553723 554436 125 - . . scaffold591 WUBlastX LTR_Ngaro 554644 555570 51 - . . scaffold591 WUBlastX LTR_Ngaro 554647 555162 61 - . . scaffold591 WUBlastX LTR_Ngaro 554794 555195 206 - . . scaffold591 WUBlastX LINE_L2 564074 564733 161 - . . scaffold591 GLEAN promoter 576441 577440 0.997895 + . ID=CGI_10027576; scaffold591 GLEAN mRNA 577441 607957 0.997895 + . ID=CGI_10027576; scaffold591 WUBlastX DNA_Harbinger 586684 586839 30 + . . scaffold591 TRF Tandem_Repeat 590708 590745 76 + . . scaffold591 WUBlastX LTR_Ngaro 600080 601042 260 - . . scaffold591 WUBlastX LTR_Ngaro 600080 600889 307 - . . scaffold591 WUBlastX LTR_Ngaro 600996 601085 37 - . . scaffold591 WUBlastX LTR_Ngaro 601091 602518 831 - . . scaffold591 WUBlastX LTR_Ngaro 602580 603263 20 - . . scaffold591 WUBlastX LTR_Ngaro 602730 603485 120 - . . scaffold591 WUBlastX LTR_Ngaro 602805 603299 144 - . . scaffold591 TRF Tandem_Repeat 605292 605340 98 + . . scaffold591 GLEAN promoter 606959 607958 0.999976 + . ID=CGI_10027577; scaffold591 GLEAN mRNA 607959 611075 0.999976 + . ID=CGI_10027577; scaffold591 TRF Tandem_Repeat 629877 629906 60 + . . scaffold591 TRF Tandem_Repeat 632152 632199 96 + . . scaffold591 TRF Tandem_Repeat 634625 634653 58 + . . scaffold591 GLEAN promoter 635160 636159 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 635618 635655 76 + . . scaffold591 GLEAN mRNA 636160 711483 0.892912 + . ID=CGI_10027579; scaffold591 TRF Tandem_Repeat 651556 651600 90 + . . scaffold591 TRF Tandem_Repeat 651872 652374 927 + . . scaffold591 TRF Tandem_Repeat 652694 652746 70 + . . scaffold591 TRF Tandem_Repeat 699101 699176 62 + . . scaffold591 TRF Tandem_Repeat 700496 700616 74 + . . scaffold591 TRF Tandem_Repeat 700504 700740 124 + . . scaffold591 TRF Tandem_Repeat 700916 700998 68 + . . scaffold591 TRF Tandem_Repeat 705807 705898 78 + . . scaffold591 GLEAN promoter 714203 715202 1 + . ID=CGI_10027580; scaffold591 GLEAN mRNA 715203 718771 1 + . ID=CGI_10027580; scaffold591 GLEAN mRNA 721166 806574 0.987378 - . ID=CGI_10027581; scaffold591 WUBlastX DNA_PiggyBac 725353 725418 27 + . . scaffold591 WUBlastX DNA_PiggyBac 726146 726229 58 + . . scaffold591 WUBlastX DNA_PiggyBac 726146 726244 45 + . . scaffold591 WUBlastX DNA_PiggyBac 726237 726464 35 + . . scaffold591 WUBlastX DNA_PiggyBac 726768 726860 35 + . . scaffold591 WUBlastX DNA_PiggyBac 727314 727454 50 + . . scaffold591 TRF Tandem_Repeat 733170 733335 181 + . . scaffold591 TRF Tandem_Repeat 733218 733372 163 + . . scaffold591 TRF Tandem_Repeat 736671 736716 92 + . . scaffold591 TRF Tandem_Repeat 736960 737011 50 + . . scaffold591 TRF Tandem_Repeat 738370 738403 68 + . . scaffold591 TRF Tandem_Repeat 745991 746040 91 + . . scaffold591 TRF Tandem_Repeat 768036 768290 312 + . . scaffold591 TRF Tandem_Repeat 770461 770927 627 + . . scaffold591 TRF Tandem_Repeat 770462 770927 576 + . . scaffold591 TRF Tandem_Repeat 792707 792743 74 + . . scaffold591 TRF Tandem_Repeat 797334 797379 76 + . . scaffold591 TRF Tandem_Repeat 800606 800650 90 + . . scaffold591 TRF Tandem_Repeat 805910 805966 105 + . . scaffold591 GLEAN promoter 806575 807574 0.987378 - . ID=CGI_10027581; scaffold591 GLEAN mRNA 811116 820984 1 - . ID=CGI_10027582; scaffold591 GLEAN promoter 812654 813653 0.999675 + . ID=CGI_10027583; scaffold591 TRF Tandem_Repeat 813371 813436 114 + . . scaffold591 GLEAN mRNA 813654 828699 0.999675 + . ID=CGI_10027583; scaffold591 TRF Tandem_Repeat 813885 813921 74 + . . scaffold591 TRF Tandem_Repeat 813919 813946 56 + . . scaffold591 GLEAN promoter 820985 821984 1 - . ID=CGI_10027582; scaffold591 GLEAN mRNA 821676 828891 1 - . ID=CGI_10027584; scaffold591 GLEAN promoter 828892 829891 1 - . ID=CGI_10027584; scaffold591 TRF Tandem_Repeat 831170 831288 147 + . . scaffold591 TRF Tandem_Repeat 831536 831592 107 + . . scaffold591 TRF Tandem_Repeat 832589 832635 94 + . . scaffold591 TRF Tandem_Repeat 832870 833005 159 + . . scaffold591 GLEAN promoter 840949 841948 0.991226 + . ID=CGI_10027585; scaffold591 GLEAN mRNA 841949 843864 0.991226 + . ID=CGI_10027585; scaffold591 TRF Tandem_Repeat 843203 843379 142 + . . scaffold591 GLEAN promoter 863050 864049 0.608402 + . ID=CGI_10027586; scaffold591 GLEAN mRNA 864050 910252 0.608402 + . ID=CGI_10027586; scaffold591 TRF Tandem_Repeat 882526 882564 78 + . . scaffold591 TRF Tandem_Repeat 889187 889250 128 + . . scaffold591 GLEAN mRNA 913472 913852 0.999063 - . ID=CGI_10027587; scaffold591 GLEAN promoter 913853 914852 0.999063 - . ID=CGI_10027587; scaffold591 TRF Tandem_Repeat 913856 914040 291 + . . scaffold591 TRF Tandem_Repeat 913856 913948 60 + . . scaffold591 GLEAN mRNA 915941 916321 0.999063 - . ID=CGI_10027588; scaffold591 GLEAN promoter 916322 917321 0.999063 - . ID=CGI_10027588; scaffold591 TRF Tandem_Repeat 916325 916545 352 + . . scaffold591 TRF Tandem_Repeat 916325 916417 60 + . . scaffold591 GLEAN mRNA 917538 918533 0.733495 - . ID=CGI_10027589; scaffold591 GLEAN promoter 918534 919533 0.733495 - . ID=CGI_10027589; scaffold591 GLEAN promoter 920084 921083 0.984825 + . ID=CGI_10027590; scaffold591 GLEAN mRNA 921084 940780 0.984825 + . ID=CGI_10027590; scaffold591 TRF Tandem_Repeat 922909 924234 1404 + . . scaffold591 TRF Tandem_Repeat 929973 930069 79 + . . scaffold591 GLEAN mRNA 945562 946541 0.999998 - . ID=CGI_10027591; scaffold591 GLEAN promoter 946542 947541 0.999998 - . ID=CGI_10027591; scaffold591 TRF Tandem_Repeat 947151 947181 53 + . . scaffold591 TRF Tandem_Repeat 947182 947242 122 + . . scaffold591 TRF Tandem_Repeat 953122 953182 122 + . . scaffold591 GLEAN promoter 957396 958395 1 + . ID=CGI_10027592; scaffold591 GLEAN mRNA 958396 962037 1 + . ID=CGI_10027592; scaffold591 GLEAN promoter 961516 962515 0.999917 + . ID=CGI_10027593; scaffold591 GLEAN mRNA 962516 963142 0.999917 + . ID=CGI_10027593; scaffold591 GLEAN mRNA 964689 993074 0.520638 - . ID=CGI_10027594; scaffold591 GLEAN promoter 993075 994074 0.520638 - . ID=CGI_10027594; scaffold591 TRF Tandem_Repeat 1001480 1001549 133 + . . scaffold591 GLEAN mRNA 1003181 1005548 1 - . ID=CGI_10027595; scaffold591 GLEAN promoter 1005549 1006548 1 - . ID=CGI_10027595; scaffold591 TRF Tandem_Repeat 1010095 1010159 130 + . . scaffold591 WUBlastX LINE_L1-Tx1 1013088 1013204 52 - . . scaffold591 WUBlastX LINE_L1-Tx1 1013258 1013434 69 - . . scaffold591 WUBlastX LINE_L1-Tx1 1013616 1013705 42 - . . scaffold591 GLEAN promoter 1015394 1016393 0.761169 + . ID=CGI_10027596; scaffold591 GLEAN mRNA 1016394 1021836 0.761169 + . ID=CGI_10027596; scaffold591 TRF Tandem_Repeat 1020659 1020744 165 + . . scaffold591 TRF Tandem_Repeat 1025133 1025273 151 + . . scaffold591 TRF Tandem_Repeat 1029821 1030257 399 + . . scaffold591 TRF Tandem_Repeat 1046364 1046871 428 + . . scaffold591 TRF Tandem_Repeat 1046946 1047032 113 + . . scaffold591 WUBlastX DNA_TcMar-Tc1 1050124 1050465 145 - . . scaffold591 WUBlastX DNA_TcMar-Tc1 1050193 1050426 145 - . . scaffold591 WUBlastX DNA_TcMar-Tc1 1050420 1050875 129 - . . scaffold591 TRF Tandem_Repeat 1051229 1051255 54 + . . scaffold591 TRF Tandem_Repeat 1051505 1051544 53 + . . scaffold591 TRF Tandem_Repeat 1052615 1053523 1150 + . . scaffold591 TRF Tandem_Repeat 1065323 1065623 107 + . . scaffold591 TRF Tandem_Repeat 1065364 1065582 147 + . . scaffold591 TRF Tandem_Repeat 1073526 1074711 1981 + . . scaffold591 TRF Tandem_Repeat 1074884 1074917 52 + . . scaffold591 WUBlastX LINE_L2 1076295 1077230 462 - . . scaffold591 WUBlastX LINE_L2 1077227 1078084 687 - . . scaffold591 GLEAN promoter 1078117 1079116 0.732046 + . ID=CGI_10027597; scaffold591 WUBlastX DNA_TcMar-Tc2 1078928 1079140 55 + . . scaffold591 WUBlastX DNA_TcMar-Tc2 1078961 1079320 97 + . . scaffold591 GLEAN mRNA 1079117 1079341 0.732046 + . ID=CGI_10027597; scaffold591 GLEAN mRNA 1080967 1121868 0.988488 - . ID=CGI_10027598; scaffold591 TRF Tandem_Repeat 1112954 1112992 78 + . . scaffold591 GLEAN promoter 1121869 1122868 0.988488 - . ID=CGI_10027598; scaffold591 GLEAN mRNA 1124921 1131654 0.811719 - . ID=CGI_10027599; scaffold591 TRF Tandem_Repeat 1125533 1125605 146 + . . scaffold591 GLEAN promoter 1131655 1132654 0.811719 - . ID=CGI_10027599; scaffold591 GLEAN promoter 1134408 1135407 0.99549 + . ID=CGI_10027600; scaffold591 GLEAN mRNA 1135408 1141622 0.99549 + . ID=CGI_10027600; scaffold591 TRF Tandem_Repeat 1139738 1140166 675 + . . scaffold591 TRF Tandem_Repeat 1141288 1141335 80 + . . scaffold591 GLEAN promoter 1142020 1143019 0.697669 + . ID=CGI_10027601; scaffold591 GLEAN mRNA 1143020 1158790 0.697669 + . ID=CGI_10027601; scaffold591 TRF Tandem_Repeat 1147271 1147698 283 + . . scaffold591 TRF Tandem_Repeat 1148623 1148769 114 + . . scaffold591 TRF Tandem_Repeat 1148623 1148706 71 + . . scaffold591 TRF Tandem_Repeat 1150300 1150355 112 + . . scaffold591 GLEAN promoter 1160815 1161814 0.915871 + . ID=CGI_10027602; scaffold591 GLEAN mRNA 1161815 1163817 0.915871 + . ID=CGI_10027602; scaffold591 GLEAN promoter 1163638 1164637 0.838965 + . ID=CGI_10027603; scaffold591 TRF Tandem_Repeat 1164153 1164421 188 + . . scaffold591 TRF Tandem_Repeat 1164367 1164589 185 + . . scaffold591 GLEAN mRNA 1164638 1172443 0.838965 + . ID=CGI_10027603; scaffold591 TRF Tandem_Repeat 1165036 1165388 609 + . . scaffold591 GLEAN promoter 1171618 1172617 0.916029 + . ID=CGI_10027604; scaffold591 GLEAN mRNA 1172618 1173028 0.916029 + . ID=CGI_10027604; scaffold591 TRF Tandem_Repeat 1173064 1173150 102 + . . scaffold591 TRF Tandem_Repeat 1173304 1173457 119 + . . scaffold591 TRF Tandem_Repeat 1173852 1174035 277 + . . scaffold591 GLEAN mRNA 1174919 1178809 1 - . ID=CGI_10027605; scaffold591 TRF Tandem_Repeat 1178177 1178223 94 + . . scaffold591 GLEAN promoter 1178810 1179809 1 - . ID=CGI_10027605; scaffold591 GLEAN mRNA 1182250 1182546 0.734444 - . ID=CGI_10027606; scaffold591 GLEAN promoter 1182547 1183546 0.734444 - . ID=CGI_10027606; scaffold591 TRF Tandem_Repeat 1187983 1188038 53 + . . scaffold591 GLEAN mRNA 1188534 1194118 0.999847 - . ID=CGI_10027607; scaffold591 TRF Tandem_Repeat 1189850 1189917 136 + . . scaffold591 GLEAN promoter 1194119 1195118 0.999847 - . ID=CGI_10027607; scaffold591 GLEAN promoter 1196180 1197179 0.999505 + . ID=CGI_10027608; scaffold591 GLEAN mRNA 1197180 1199807 0.999505 + . ID=CGI_10027608; scaffold591 GLEAN promoter 1202315 1203314 1 + . ID=CGI_10027609; scaffold591 GLEAN mRNA 1203315 1204197 1 + . ID=CGI_10027609; scaffold591 GLEAN promoter 1204753 1205752 1 + . ID=CGI_10027610; scaffold591 GLEAN mRNA 1205753 1211513 1 + . ID=CGI_10027610; scaffold591 GLEAN mRNA 1215563 1218637 1 - . ID=CGI_10027611; scaffold591 GLEAN promoter 1218175 1219174 0.866123 + . ID=CGI_10027612; scaffold591 GLEAN promoter 1218638 1219637 1 - . ID=CGI_10027611; scaffold591 GLEAN mRNA 1219175 1227080 0.866123 + . ID=CGI_10027612; scaffold591 GLEAN promoter 1235248 1236247 1 + . ID=CGI_10027613; scaffold591 GLEAN mRNA 1236248 1239995 1 + . ID=CGI_10027613; scaffold591 GLEAN promoter 1244422 1245421 0.531554 + . ID=CGI_10027614; scaffold591 GLEAN mRNA 1245422 1253154 0.531554 + . ID=CGI_10027614; scaffold591 TRF Tandem_Repeat 1253664 1253707 79 + . . scaffold591 TRF Tandem_Repeat 1255919 1256103 209 + . . scaffold591 WUBlastX LINE_L1 1256421 1257548 97 + . . scaffold591 WUBlastX LINE_L1-Tx1 1256553 1257506 631 + . . scaffold591 TRF Tandem_Repeat 1257610 1257770 164 + . . scaffold591 TRF Tandem_Repeat 1257610 1257751 187 + . . scaffold591 WUBlastX LINE_L1-Tx1 1259075 1259431 66 - . . scaffold591 WUBlastX LINE_L2 1271120 1271758 169 - . . scaffold591 TRF Tandem_Repeat 1272206 1272924 1117 + . . scaffold591 GLEAN mRNA 1274053 1284543 0.999861 - . ID=CGI_10027615; scaffold591 TRF Tandem_Repeat 1275932 1276095 175 + . . scaffold591 TRF Tandem_Repeat 1280476 1280507 64 + . . scaffold591 GLEAN promoter 1284544 1285543 0.999861 - . ID=CGI_10027615; scaffold591 GLEAN mRNA 1286959 1291687 1 - . ID=CGI_10027616; scaffold591 WUBlastX LINE_RTE-X 1289822 1290127 53 - . . scaffold591 GLEAN promoter 1291688 1292687 1 - . ID=CGI_10027616; scaffold591 GLEAN promoter 1294930 1295929 1 + . ID=CGI_10027617; scaffold591 GLEAN mRNA 1295930 1296954 1 + . ID=CGI_10027617; scaffold591 WUBlastX LTR_Pao 1300791 1301027 22 - . . scaffold591 GLEAN mRNA 1330098 1332216 0.999373 - . ID=CGI_10027618; scaffold591 GLEAN promoter 1332217 1333216 0.999373 - . ID=CGI_10027618; scaffold591 TRF Tandem_Repeat 1333233 1333288 112 + . . scaffold591 GLEAN mRNA 1340097 1350659 0.999322 - . ID=CGI_10027619; scaffold591 TRF Tandem_Repeat 1350485 1350529 90 + . . scaffold591 GLEAN promoter 1350660 1351659 0.999322 - . ID=CGI_10027619; scaffold591 WUBlastX LINE_RTE-X 1351919 1352149 59 - . . scaffold591 TRF Tandem_Repeat 1352749 1352793 74 + . . scaffold591 TRF Tandem_Repeat 1354996 1355800 820 + . . scaffold591 TRF Tandem_Repeat 1355012 1355209 222 + . . scaffold591 GLEAN mRNA 1357631 1368692 0.999661 - . ID=CGI_10027620; scaffold591 TRF Tandem_Repeat 1363680 1363796 101 + . . scaffold591 TRF Tandem_Repeat 1364963 1365353 223 + . . scaffold591 TRF Tandem_Repeat 1365146 1365432 103 + . . scaffold591 GLEAN promoter 1368693 1369692 0.999661 - . ID=CGI_10027620; scaffold591 TRF Tandem_Repeat 1369657 1369816 88 + . . scaffold591 TRF Tandem_Repeat 1370008 1370094 79 + . . scaffold591 TRF Tandem_Repeat 1370934 1371810 919 + . . scaffold591 GLEAN promoter 1371454 1372453 0.558326 + . ID=CGI_10027621; scaffold591 GLEAN mRNA 1372454 1372912 0.558326 + . ID=CGI_10027621; scaffold591 GLEAN promoter 1372801 1373800 1 + . ID=CGI_10027622; scaffold591 GLEAN mRNA 1373801 1377309 1 + . ID=CGI_10027622; scaffold591 GLEAN promoter 1379865 1380864 0.98248 + . ID=CGI_10027623; scaffold591 GLEAN mRNA 1380865 1381425 0.98248 + . ID=CGI_10027623; scaffold591 GLEAN promoter 1381827 1382826 0.924513 + . ID=CGI_10027624; scaffold591 GLEAN mRNA 1382827 1383570 0.924513 + . ID=CGI_10027624; scaffold591 GLEAN mRNA 1387067 1391371 0.973404 - . ID=CGI_10027625; scaffold591 TRF Tandem_Repeat 1390876 1391249 336 + . . scaffold591 GLEAN promoter 1391372 1392371 0.973404 - . ID=CGI_10027625; scaffold591 TRF Tandem_Repeat 1391406 1391454 71 + . . scaffold591 TRF Tandem_Repeat 1392262 1392304 68 + . . scaffold591 GLEAN promoter 1400037 1401036 0.968913 + . ID=CGI_10027626; scaffold591 GLEAN mRNA 1401037 1412080 0.968913 + . ID=CGI_10027626; scaffold591 WUBlastX LINE_RTE-X 1406702 1406845 32 + . . scaffold591 TRF Tandem_Repeat 1410154 1410218 112 + . . scaffold591 TRF Tandem_Repeat 1412174 1412213 80 + . . scaffold591 TRF Tandem_Repeat 1412596 1412726 90 + . . scaffold591 GLEAN promoter 1413657 1414656 0.968913 + . ID=CGI_10027627; scaffold591 GLEAN mRNA 1414657 1415094 0.968913 + . ID=CGI_10027627; scaffold591 GLEAN promoter 1424535 1425534 1 + . ID=CGI_10027628; scaffold591 GLEAN mRNA 1425535 1425972 1 + . ID=CGI_10027628; scaffold591 TRF Tandem_Repeat 1430576 1430954 596 + . . scaffold592 GLEAN promoter 2363 3362 0.499918 + . ID=CGI_10010700; scaffold592 GLEAN mRNA 3363 19316 0.499918 + . ID=CGI_10010700; scaffold592 TRF Tandem_Repeat 14461 14495 70 + . . scaffold592 WUBlastX DNA_Academ 18749 18910 27 + . . scaffold592 WUBlastX DNA_Academ 18815 18910 38 + . . scaffold592 WUBlastX DNA_Academ 18912 19343 68 + . . scaffold592 TRF Tandem_Repeat 21672 21706 61 + . . scaffold592 GLEAN mRNA 31503 37949 0.999996 - . ID=CGI_10010701; scaffold592 GLEAN promoter 37950 38949 0.999996 - . ID=CGI_10010701; scaffold592 TRF Tandem_Repeat 39394 40310 1159 + . . scaffold592 TRF Tandem_Repeat 41299 41386 77 + . . scaffold592 GLEAN mRNA 55438 56103 0.999661 - . ID=CGI_10010702; scaffold592 GLEAN promoter 56104 57103 0.999661 - . ID=CGI_10010702; scaffold592 TRF Tandem_Repeat 57125 58036 1125 + . . scaffold592 TRF Tandem_Repeat 59462 59511 84 + . . scaffold592 TRF Tandem_Repeat 59465 59510 58 + . . scaffold592 TRF Tandem_Repeat 62408 62452 81 + . . scaffold592 TRF Tandem_Repeat 82388 82432 63 + . . scaffold592 GLEAN mRNA 82949 94278 0.77896 - . ID=CGI_10010703; scaffold592 TRF Tandem_Repeat 85371 85404 52 + . . scaffold592 GLEAN promoter 94279 95278 0.77896 - . ID=CGI_10010703; scaffold592 GLEAN mRNA 98381 102673 1 - . ID=CGI_10010704; scaffold592 GLEAN promoter 102674 103673 1 - . ID=CGI_10010704; scaffold592 TRF Tandem_Repeat 106582 106635 108 + . . scaffold592 GLEAN promoter 113660 114659 0.728285 + . ID=CGI_10010705; scaffold592 TRF Tandem_Repeat 113692 113741 82 + . . scaffold592 GLEAN mRNA 114660 131766 0.728285 + . ID=CGI_10010705; scaffold592 TRF Tandem_Repeat 123893 123969 59 + . . scaffold592 TRF Tandem_Repeat 136000 136050 95 + . . scaffold592 TRF Tandem_Repeat 144421 144452 64 + . . scaffold592 GLEAN promoter 144521 145520 0.993189 + . ID=CGI_10010706; scaffold592 GLEAN mRNA 145521 173375 0.993189 + . ID=CGI_10010706; scaffold592 TRF Tandem_Repeat 145645 145978 123 + . . scaffold592 TRF Tandem_Repeat 145665 145856 194 + . . scaffold592 TRF Tandem_Repeat 151247 151306 113 + . . scaffold592 TRF Tandem_Repeat 155385 155427 86 + . . scaffold592 TRF Tandem_Repeat 160206 160287 157 + . . scaffold592 TRF Tandem_Repeat 172147 172171 50 + . . scaffold592 TRF Tandem_Repeat 172382 172568 189 + . . scaffold592 TRF Tandem_Repeat 175758 175929 263 + . . scaffold592 GLEAN mRNA 178454 198582 0.802597 - . ID=CGI_10010707; scaffold592 TRF Tandem_Repeat 191884 191909 52 + . . scaffold592 TRF Tandem_Repeat 192651 192728 156 + . . scaffold592 TRF Tandem_Repeat 197958 197992 70 + . . scaffold592 GLEAN promoter 198583 199582 0.802597 - . ID=CGI_10010707; scaffold592 TRF Tandem_Repeat 200480 200519 80 + . . scaffold592 TRF Tandem_Repeat 202194 202312 202 + . . scaffold592 GLEAN mRNA 203943 230361 0.685514 - . ID=CGI_10010708; scaffold592 TRF Tandem_Repeat 209991 210097 142 + . . scaffold592 TRF Tandem_Repeat 211705 211850 103 + . . scaffold592 TRF Tandem_Repeat 211760 211850 146 + . . scaffold592 TRF Tandem_Repeat 222272 222895 586 + . . scaffold592 TRF Tandem_Repeat 228786 229128 686 + . . scaffold592 GLEAN promoter 230362 231361 0.685514 - . ID=CGI_10010708; scaffold592 WUBlastX LTR_Copia 247661 248059 54 - . . scaffold592 WUBlastX LTR_Copia 247838 248062 62 - . . scaffold592 WUBlastX LTR_Gypsy 248056 248475 36 - . . scaffold592 WUBlastX LTR_Gypsy-Cigr 248134 248625 192 - . . scaffold592 GLEAN promoter 249028 250027 0.999074 + . ID=CGI_10010709; scaffold592 GLEAN mRNA 250028 260602 0.999074 + . ID=CGI_10010709; scaffold592 TRF Tandem_Repeat 255208 255520 433 + . . scaffold592 GLEAN promoter 261453 262452 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 262017 262041 50 + . . scaffold592 GLEAN mRNA 262453 271411 1 + . ID=CGI_10010710; scaffold592 TRF Tandem_Repeat 265480 265512 50 + . . scaffold592 TRF Tandem_Repeat 265636 265677 84 + . . scaffold592 TRF Tandem_Repeat 266280 266446 119 + . . scaffold592 TRF Tandem_Repeat 266313 266471 112 + . . scaffold592 TRF Tandem_Repeat 268358 268960 443 + . . scaffold592 TRF Tandem_Repeat 268358 268960 412 + . . scaffold592 TRF Tandem_Repeat 268358 268700 206 + . . scaffold592 TRF Tandem_Repeat 268403 268885 166 + . . scaffold592 TRF Tandem_Repeat 268738 268960 186 + . . scaffold593 TRF Tandem_Repeat 18146 18196 50 + . . scaffold593 TRF Tandem_Repeat 18968 19000 66 + . . scaffold593 TRF Tandem_Repeat 21090 21148 55 + . . scaffold593 TRF Tandem_Repeat 21118 21183 73 + . . scaffold593 TRF Tandem_Repeat 32843 33079 201 + . . scaffold593 TRF Tandem_Repeat 33166 33386 203 + . . scaffold593 GLEAN promoter 34658 35657 0.99859 + . ID=CGI_10022510; scaffold593 GLEAN mRNA 35658 39528 0.99859 + . ID=CGI_10022510; scaffold593 WUBlastX DNA_IS4EU 41174 41278 45 + . . scaffold593 WUBlastX DNA_IS4EU 41263 41796 52 + . . scaffold593 WUBlastX DNA_IS4EU 41398 41796 116 + . . scaffold593 TRF Tandem_Repeat 41839 41876 76 + . . scaffold593 WUBlastX DNA_Kolobok-IS4 42794 43606 248 - . . scaffold593 WUBlastX DNA_Kolobok-IS4 45648 45887 48 - . . scaffold593 WUBlastX DNA_P 45753 45878 70 - . . scaffold593 WUBlastX LINE_Penelope 46693 46938 60 + . . scaffold593 WUBlastX LINE_Penelope 48190 48525 47 + . . scaffold593 WUBlastX LINE_Penelope 48247 48525 72 + . . scaffold593 WUBlastX LTR_Gypsy 48679 48813 21 + . . scaffold593 WUBlastX LTR_Gypsy 48724 48828 22 + . . scaffold593 WUBlastX LTR_DIRS 48760 49293 136 + . . scaffold593 WUBlastX LTR_DIRS 49479 50345 462 + . . scaffold593 WUBlastX LTR_DIRS 50327 51340 316 + . . scaffold593 WUBlastX LTR_DIRS? 52133 52432 185 + . . scaffold593 TRF Tandem_Repeat 54218 54295 52 + . . scaffold593 WUBlastX LINE_CR1 67336 67644 116 + . . scaffold593 WUBlastX LINE_CR1 67402 67716 143 + . . scaffold593 GLEAN promoter 67459 68458 0.5 + . ID=CGI_10022511; scaffold593 GLEAN mRNA 68459 77990 0.5 + . ID=CGI_10022511; scaffold593 TRF Tandem_Repeat 77110 77141 57 + . . scaffold593 TRF Tandem_Repeat 89240 89586 487 + . . scaffold593 WUBlastX DNA_PiggyBac 96993 97064 22 + . . scaffold593 WUBlastX DNA_PiggyBac 97079 97225 65 + . . scaffold593 GLEAN mRNA 103925 106843 0.776723 - . ID=CGI_10022512; scaffold593 GLEAN promoter 106844 107843 0.776723 - . ID=CGI_10022512; scaffold593 WUBlastX LTR_Ngaro 113817 113945 37 - . . scaffold593 WUBlastX LTR_Ngaro 113841 113945 46 - . . scaffold593 WUBlastX LTR_Ngaro 114004 114165 88 - . . scaffold593 GLEAN mRNA 123601 128916 0.702369 - . ID=CGI_10022513; scaffold593 GLEAN promoter 128917 129916 0.702369 - . ID=CGI_10022513; scaffold593 GLEAN promoter 133773 134772 0.725426 + . ID=CGI_10022514; scaffold593 GLEAN mRNA 134773 135513 0.725426 + . ID=CGI_10022514; scaffold593 WUBlastX LTR_Gypsy-Cigr 135916 136398 20 + . . scaffold593 WUBlastX LINE_L2 139277 139555 66 + . . scaffold593 WUBlastX LINE_L2 139415 139825 62 + . . scaffold593 WUBlastX LINE_L2 139415 139546 69 + . . scaffold593 GLEAN mRNA 140296 140989 0.56309 - . ID=CGI_10022516; scaffold593 GLEAN promoter 140990 141989 0.56309 - . ID=CGI_10022516; scaffold593 WUBlastX LTR_Gypsy 148794 149546 47 + . . scaffold593 WUBlastX LTR_Gypsy-Cigr 148929 149450 146 + . . scaffold593 WUBlastX LTR_Gypsy 148986 149741 81 + . . scaffold593 WUBlastX LTR_Gypsy 149196 150218 59 + . . scaffold593 WUBlastX LTR_Gypsy-Cigr 149907 150221 89 + . . scaffold593 TRF Tandem_Repeat 151958 152009 95 + . . scaffold593 TRF Tandem_Repeat 152313 152375 119 + . . scaffold593 GLEAN mRNA 178201 178734 0.866165 - . ID=CGI_10022517; scaffold593 GLEAN promoter 178735 179734 0.866165 - . ID=CGI_10022517; scaffold593 WUBlastX LINE_RTE-X 185839 186102 58 + . . scaffold593 WUBlastX LINE_RTE-X 185839 186039 73 + . . scaffold593 WUBlastX LINE_RTE-X 185839 185991 82 + . . scaffold593 TRF Tandem_Repeat 186458 186589 255 + . . scaffold593 TRF Tandem_Repeat 187433 187514 155 + . . scaffold593 WUBlastX LINE_L2 189345 190097 365 - . . scaffold593 WUBlastX LINE_L2 190121 190666 408 - . . scaffold593 WUBlastX LINE_CR1 191039 191095 28 - . . scaffold593 WUBlastX LINE_L1 191512 192312 266 + . . scaffold593 WUBlastX LINE_L1-Tx1 191713 192588 369 + . . scaffold593 TRF Tandem_Repeat 197835 200143 3364 + . . scaffold593 WUBlastX LINE_L2 222081 222551 51 + . . scaffold593 WUBlastX LINE_L2 222180 222566 107 + . . scaffold593 WUBlastX LINE_L2 222264 222566 148 + . . scaffold593 TRF Tandem_Repeat 224088 224112 50 + . . scaffold593 WUBlastX LINE_RTE-X 224251 225297 205 - . . scaffold593 WUBlastX LINE_CR1 224995 225357 78 - . . scaffold593 TRF Tandem_Repeat 226982 227006 50 + . . scaffold593 TRF Tandem_Repeat 241353 241394 59 + . . scaffold593 TRF Tandem_Repeat 241581 241666 100 + . . scaffold593 TRF Tandem_Repeat 246140 246204 71 + . . scaffold593 TRF Tandem_Repeat 249742 249788 94 + . . scaffold593 GLEAN promoter 250882 251881 0.416932 + . ID=CGI_10022518; scaffold593 GLEAN mRNA 251882 256666 0.416932 + . ID=CGI_10022518; scaffold593 GLEAN promoter 258567 259566 0.878793 + . ID=CGI_10022519; scaffold593 GLEAN mRNA 259567 261338 0.878793 + . ID=CGI_10022519; scaffold593 WUBlastX LTR_Ngaro 263447 263806 115 - . . scaffold593 WUBlastX LTR_Ngaro 263528 263806 117 - . . scaffold593 WUBlastX LTR_Ngaro 263570 263818 167 - . . scaffold593 WUBlastX LTR_Ngaro 263829 263951 42 - . . scaffold593 WUBlastX LTR_Pao 263959 264042 37 - . . scaffold593 WUBlastX LTR_Pao 263971 264066 28 - . . scaffold593 WUBlastX LTR_Pao 264063 264449 101 - . . scaffold593 WUBlastX LTR_Pao 264063 264389 172 - . . scaffold593 WUBlastX LTR_Pao 264433 264513 66 - . . scaffold593 WUBlastX LTR_Pao 264433 264528 53 - . . scaffold593 WUBlastX LTR_Pao 264677 265531 129 - . . scaffold593 WUBlastX LTR_Pao 264806 265531 149 - . . scaffold593 WUBlastX LTR_Pao 264944 265534 191 - . . scaffold593 WUBlastX LTR_Pao 265444 265788 160 - . . scaffold593 WUBlastX LTR_Pao 265450 265896 93 - . . scaffold593 WUBlastX LTR_Pao 266125 266172 28 - . . scaffold593 WUBlastX LTR_Pao 266270 266491 87 - . . scaffold593 WUBlastX LTR_Pao 266297 266479 123 - . . scaffold593 WUBlastX LTR_Pao 266500 266592 57 - . . scaffold593 WUBlastX LTR_Pao 266532 266780 191 - . . scaffold593 WUBlastX LTR_Pao 266574 266780 194 - . . scaffold593 WUBlastX LTR_Pao 266589 266819 53 - . . scaffold593 WUBlastX LTR_Pao 267836 268288 110 - . . scaffold593 WUBlastX LTR_Pao 267851 268234 233 - . . scaffold593 WUBlastX LTR_Pao 268255 268335 45 - . . scaffold593 WUBlastX LTR_Pao 268302 268928 162 - . . scaffold593 WUBlastX LTR_Pao 268644 269756 252 - . . scaffold593 WUBlastX LTR_Pao 269235 269756 273 - . . scaffold593 WUBlastX DNA_TcMar-Tc2 272705 272860 97 + . . scaffold593 WUBlastX DNA_TcMar-Tc2 272868 273656 324 + . . scaffold593 WUBlastX DNA_TcMar-Tc2 273620 273934 143 + . . scaffold593 GLEAN mRNA 274494 275384 0.999999 - . ID=CGI_10022520; scaffold593 WUBlastX LINE_RTE-X 274506 275561 252 - . . scaffold593 GLEAN promoter 275385 276384 0.999999 - . ID=CGI_10022520; scaffold593 WUBlastX LINE_RTE-X 275555 275818 50 - . . scaffold593 WUBlastX LINE_RTE-X 275555 275773 94 - . . scaffold593 GLEAN promoter 276051 277050 0.767842 + . ID=CGI_10022521; scaffold593 GLEAN mRNA 277051 277227 0.767842 + . ID=CGI_10022521; scaffold593 GLEAN promoter 278394 279393 0.982077 + . ID=CGI_10022522; scaffold593 GLEAN mRNA 279394 293085 0.982077 + . ID=CGI_10022522; scaffold593 GLEAN mRNA 297375 355308 0.998162 - . ID=CGI_10022523; scaffold593 TRF Tandem_Repeat 303303 303336 50 + . . scaffold593 GLEAN promoter 355309 356308 0.998162 - . ID=CGI_10022523; scaffold593 GLEAN mRNA 355714 363688 0.998961 - . ID=CGI_10022524; scaffold593 GLEAN promoter 363689 364688 0.998961 - . ID=CGI_10022524; scaffold593 GLEAN mRNA 364003 390547 0.999154 - . ID=CGI_10022525; scaffold593 GLEAN promoter 390548 391547 0.999154 - . ID=CGI_10022525; scaffold593 WUBlastX LINE_L2 393639 393695 22 + . . scaffold593 WUBlastX LINE_CR1 393729 393785 22 + . . scaffold593 WUBlastX LINE_CR1-L2 394210 394977 171 + . . scaffold593 WUBlastX LINE_RTE-X 394327 395082 442 + . . scaffold593 WUBlastX LINE_RTE-X 394938 395507 116 + . . scaffold593 WUBlastX LINE_RTE-X 395031 395402 201 + . . scaffold593 TRF Tandem_Repeat 398198 398246 98 + . . scaffold593 TRF Tandem_Repeat 399619 399747 75 + . . scaffold593 GLEAN promoter 401387 402386 0.790294 + . ID=CGI_10022526; scaffold593 GLEAN mRNA 402387 420468 0.790294 + . ID=CGI_10022526; scaffold593 GLEAN mRNA 426016 441454 0.649515 - . ID=CGI_10022527; scaffold593 GLEAN promoter 434625 435624 0.522339 + . ID=CGI_10022528; scaffold593 GLEAN mRNA 435625 439779 0.522339 + . ID=CGI_10022528; scaffold593 TRF Tandem_Repeat 436518 436661 139 + . . scaffold593 GLEAN promoter 441455 442454 0.649515 - . ID=CGI_10022527; scaffold593 TRF Tandem_Repeat 443500 443532 66 + . . scaffold593 TRF Tandem_Repeat 443951 443991 82 + . . scaffold593 WUBlastX LINE_RTE-X 446566 447069 121 - . . scaffold593 TRF Tandem_Repeat 448523 448547 50 + . . scaffold593 TRF Tandem_Repeat 452254 452293 80 + . . scaffold593 GLEAN mRNA 456116 457875 0.761232 - . ID=CGI_10022529; scaffold593 GLEAN promoter 457876 458875 0.761232 - . ID=CGI_10022529; scaffold593 GLEAN promoter 458481 459480 1 + . ID=CGI_10022530; scaffold593 GLEAN mRNA 459481 475074 1 + . ID=CGI_10022530; scaffold593 TRF Tandem_Repeat 470574 470869 379 + . . scaffold593 TRF Tandem_Repeat 470680 470861 166 + . . scaffold593 GLEAN mRNA 478756 482221 1 - . ID=CGI_10022531; scaffold593 GLEAN promoter 481551 482550 0.997605 + . ID=CGI_10022532; scaffold593 GLEAN promoter 482222 483221 1 - . ID=CGI_10022531; scaffold593 GLEAN mRNA 482551 496845 0.997605 + . ID=CGI_10022532; scaffold593 WUBlastX LINE_RTE-BovB 482720 482818 20 - . . scaffold593 WUBlastX LINE_RTE-BovB 483435 483629 58 - . . scaffold593 WUBlastX LINE_RTE-BovB 483465 483647 93 - . . scaffold593 WUBlastX LINE_RTE-BovB 483483 483854 54 - . . scaffold593 WUBlastX LINE_RTE-BovB 484677 485102 81 - . . scaffold593 TRF Tandem_Repeat 491363 492110 946 + . . scaffold593 TRF Tandem_Repeat 493222 493290 59 + . . scaffold593 TRF Tandem_Repeat 496253 496319 80 + . . scaffold593 TRF Tandem_Repeat 496265 496315 84 + . . scaffold593 WUBlastX LTR_Foamy 497005 497760 103 - . . scaffold593 WUBlastX LTR_Gypsy 497173 497739 190 - . . scaffold593 WUBlastX LTR_Gypsy 497777 498784 461 - . . scaffold593 WUBlastX LTR_Gypsy 497972 498784 471 - . . scaffold593 WUBlastX LTR_Gypsy 498780 499160 147 - . . scaffold593 WUBlastX LTR_Gypsy-Cigr 498807 499124 172 - . . scaffold593 WUBlastX LTR_Gypsy 499117 499305 103 - . . scaffold593 WUBlastX LTR_Gypsy 499171 499335 80 - . . scaffold593 WUBlastX LTR_Gypsy 499174 499365 46 - . . scaffold593 WUBlastX LTR_Gypsy 499307 499864 43 - . . scaffold593 GLEAN promoter 499902 500901 0.997973 + . ID=CGI_10022533; scaffold593 WUBlastX LTR_Gypsy 500018 500350 24 - . . scaffold593 WUBlastX LTR_Gypsy 500294 500350 29 - . . scaffold593 WUBlastX LTR_Gypsy 500427 500690 41 - . . scaffold593 WUBlastX LTR_Gypsy 500517 500708 45 - . . scaffold593 WUBlastX LTR_Gypsy-Cigr 500517 500948 31 - . . scaffold593 WUBlastX LTR_Gypsy 500523 500741 31 - . . scaffold593 GLEAN mRNA 500902 502632 0.997973 + . ID=CGI_10022533; scaffold593 TRF Tandem_Repeat 507859 507925 91 + . . scaffold593 TRF Tandem_Repeat 507867 507916 73 + . . scaffold593 WUBlastX LTR_Gypsy 513666 514385 276 - . . scaffold593 WUBlastX LTR_DIRS 516372 517028 26 - . . scaffold593 WUBlastX LTR_DIRS 516576 517133 51 - . . scaffold593 WUBlastX LTR_DIRS 516594 516995 63 - . . scaffold593 TRF Tandem_Repeat 520166 520202 74 + . . scaffold593 TRF Tandem_Repeat 540176 540246 99 + . . scaffold593 TRF Tandem_Repeat 541299 541346 96 + . . scaffold593 WUBlastX DNA_hAT-Blackja 542506 542910 55 - . . scaffold593 WUBlastX DNA_hAT-Blackja 542976 543131 29 - . . scaffold593 WUBlastX DNA_hAT-Blackja 543045 543128 50 - . . scaffold593 TRF Tandem_Repeat 555887 556386 614 + . . scaffold593 TRF Tandem_Repeat 555887 556445 629 + . . scaffold593 TRF Tandem_Repeat 567998 568814 1119 + . . scaffold593 TRF Tandem_Repeat 567998 568841 1041 + . . scaffold593 TRF Tandem_Repeat 568005 568147 82 + . . scaffold593 TRF Tandem_Repeat 568058 568304 73 + . . scaffold593 TRF Tandem_Repeat 569726 569755 60 + . . scaffold593 TRF Tandem_Repeat 573444 574262 1293 + . . scaffold593 TRF Tandem_Repeat 578208 578250 59 + . . scaffold593 TRF Tandem_Repeat 580025 580072 96 + . . scaffold593 GLEAN mRNA 582717 596108 0.576652 - . ID=CGI_10022534; scaffold593 GLEAN promoter 596109 597108 0.576652 - . ID=CGI_10022534; scaffold593 GLEAN promoter 600166 601165 1 + . ID=CGI_10022535; scaffold593 GLEAN mRNA 601166 605937 1 + . ID=CGI_10022535; scaffold593 TRF Tandem_Repeat 601597 601687 83 + . . scaffold593 TRF Tandem_Repeat 614483 614570 117 + . . scaffold593 WUBlastX LTR_DIRS 620923 621420 58 - . . scaffold593 WUBlastX LTR_DIRS 621097 621495 84 - . . scaffold593 WUBlastX LTR_DIRS 621525 621722 52 - . . scaffold593 WUBlastX LTR_DIRS 621558 621812 53 - . . scaffold593 WUBlastX LTR_DIRS 621812 622489 103 - . . scaffold593 WUBlastX LTR_DIRS 621860 622729 43 - . . scaffold593 WUBlastX LINE_Penelope 644709 645293 63 - . . scaffold593 GLEAN promoter 653774 654773 0.996552 + . ID=CGI_10022536; scaffold593 GLEAN mRNA 654774 682045 0.996552 + . ID=CGI_10022536; scaffold593 TRF Tandem_Repeat 671195 672177 646 + . . scaffold593 TRF Tandem_Repeat 671195 672184 809 + . . scaffold593 TRF Tandem_Repeat 675686 675724 51 + . . scaffold593 TRF Tandem_Repeat 689847 689895 89 + . . scaffold593 TRF Tandem_Repeat 703390 703475 57 + . . scaffold593 TRF Tandem_Repeat 708625 711767 3661 + . . scaffold593 TRF Tandem_Repeat 711849 712613 798 + . . scaffold593 WUBlastX LINE_L1-Tx1 713481 713735 73 - . . scaffold593 GLEAN mRNA 717996 718604 1 - . ID=CGI_10022537; scaffold593 GLEAN promoter 718605 719604 1 - . ID=CGI_10022537; scaffold593 WUBlastX DNA_IS 722167 723189 1708 - . . scaffold593 GLEAN promoter 722885 723884 0.733495 + . ID=CGI_10022538; scaffold593 GLEAN mRNA 723885 724475 0.733495 + . ID=CGI_10022538; scaffold593 GLEAN mRNA 725148 726467 0.937779 - . ID=CGI_10022539; scaffold593 WUBlastX LINE_RTE-X 726163 727323 47 - . . scaffold593 GLEAN promoter 726468 727467 0.937779 - . ID=CGI_10022539; scaffold593 WUBlastX LINE_RTE-X 727080 727217 49 - . . scaffold593 WUBlastX LINE_RTE-X 727225 727344 41 - . . scaffold593 TRF Tandem_Repeat 735077 735108 55 + . . scaffold593 GLEAN promoter 739695 740694 1 + . ID=CGI_10022540; scaffold593 GLEAN mRNA 740695 740904 1 + . ID=CGI_10022540; scaffold593 TRF Tandem_Repeat 757900 757945 74 + . . scaffold593 GLEAN promoter 758594 759593 0.6496 + . ID=CGI_10022541; scaffold593 GLEAN mRNA 759594 760445 0.6496 + . ID=CGI_10022541; scaffold594 WUBlastX LTR_Gypsy 3 215 133 + . . scaffold594 WUBlastX LTR_Gypsy 6 260 122 + . . scaffold594 WUBlastX LTR_Gypsy 9 371 71 + . . scaffold594 WUBlastX LTR_Gypsy 2471 3358 361 + . . scaffold594 WUBlastX LTR_Gypsy-Cigr 2555 3256 379 + . . scaffold594 WUBlastX LTR_Gypsy-Cigr 2555 3562 295 + . . scaffold594 WUBlastX RC_Helitron 3650 4174 127 + . . scaffold594 WUBlastX RC_Helitron 3737 4465 76 + . . scaffold594 GLEAN mRNA 18205 21750 0.843448 - . ID=CGI_10016367; scaffold594 GLEAN promoter 21610 22609 0.480011 + . ID=CGI_10016368; scaffold594 GLEAN promoter 21751 22750 0.843448 - . ID=CGI_10016367; scaffold594 GLEAN mRNA 22610 55538 0.480011 + . ID=CGI_10016368; scaffold594 TRF Tandem_Repeat 23117 23163 80 + . . scaffold594 TRF Tandem_Repeat 24688 24875 128 + . . scaffold594 TRF Tandem_Repeat 31997 32022 52 + . . scaffold594 TRF Tandem_Repeat 32258 32316 86 + . . scaffold594 TRF Tandem_Repeat 41544 41577 68 + . . scaffold594 TRF Tandem_Repeat 43894 43926 66 + . . scaffold594 GLEAN promoter 60918 61917 0.931667 + . ID=CGI_10016369; scaffold594 GLEAN mRNA 61918 67128 0.931667 + . ID=CGI_10016369; scaffold594 WUBlastX LTR_Gypsy 73845 74027 21 + . . scaffold594 WUBlastX LTR_Gypsy 73875 74183 26 + . . scaffold594 WUBlastX LTR_Gypsy 73884 74066 38 + . . scaffold594 WUBlastX DNA_TcMar-Marin 77231 77383 22 + . . scaffold594 WUBlastX DNA_TcMar-Marin 77258 77407 40 + . . scaffold594 WUBlastX DNA_TcMar-Marin 77313 77807 57 + . . scaffold594 WUBlastX DNA_TcMar-Marin 77412 77807 98 + . . scaffold594 WUBlastX DNA_TcMar-Marin 77671 77850 25 + . . scaffold594 WUBlastX DNA_TcMar-Marin 78034 78429 208 + . . scaffold594 WUBlastX LINE_RTE-X 84145 84216 28 - . . scaffold594 WUBlastX LINE_RTE-X 84335 84487 26 - . . scaffold594 WUBlastX LINE_RTE-X 84683 84748 30 - . . scaffold594 WUBlastX LINE_RTE-X 84795 85163 64 - . . scaffold594 WUBlastX LINE_RTE-X 85171 85338 59 - . . scaffold594 WUBlastX LINE_RTE-X 85358 85861 170 - . . scaffold594 WUBlastX LINE_RTE-X 85361 85972 148 - . . scaffold594 WUBlastX LINE_RTE-X 86779 86967 40 - . . scaffold594 GLEAN mRNA 96543 104709 0.559341 - . ID=CGI_10016370; scaffold594 GLEAN promoter 104710 105709 0.559341 - . ID=CGI_10016370; scaffold594 GLEAN promoter 109468 110467 0.733495 + . ID=CGI_10016371; scaffold594 GLEAN mRNA 110468 110740 0.733495 + . ID=CGI_10016371; scaffold594 WUBlastX LINE_L2 110810 110902 20 + . . scaffold594 WUBlastX LINE_CR1-L2 110893 111312 188 + . . scaffold594 WUBlastX LINE_L1 110896 111393 43 + . . scaffold594 GLEAN promoter 111468 112467 0.993589 + . ID=CGI_10016372; scaffold594 GLEAN mRNA 112468 120398 0.993589 + . ID=CGI_10016372; scaffold594 TRF Tandem_Repeat 115584 115627 79 + . . scaffold594 TRF Tandem_Repeat 120786 120820 70 + . . scaffold594 GLEAN mRNA 122029 123159 0.555273 - . ID=CGI_10016373; scaffold594 GLEAN promoter 123160 124159 0.555273 - . ID=CGI_10016373; scaffold594 WUBlastX LINE_L1-Tx1 127675 127755 36 + . . scaffold594 WUBlastX LINE_L1-Tx1 127766 127849 46 + . . scaffold594 TRF Tandem_Repeat 129167 129258 142 + . . scaffold594 TRF Tandem_Repeat 129455 129664 275 + . . scaffold594 TRF Tandem_Repeat 129455 129664 266 + . . scaffold594 TRF Tandem_Repeat 157176 157224 98 + . . scaffold594 WUBlastX LTR_DIRS 159118 159567 243 - . . scaffold594 WUBlastX LTR_DIRS? 159118 159753 203 - . . scaffold594 WUBlastX LTR_DIRS 159761 160033 96 - . . scaffold594 TRF Tandem_Repeat 160136 160394 254 + . . scaffold594 WUBlastX LTR_DIRS 160660 161091 222 - . . scaffold594 WUBlastX LTR_DIRS 160753 161364 49 - . . scaffold594 WUBlastX LTR_DIRS 161193 162947 455 - . . scaffold594 GLEAN mRNA 163347 165002 0.528485 - . ID=CGI_10016374; scaffold594 GLEAN promoter 165003 166002 0.528485 - . ID=CGI_10016374; scaffold594 WUBlastX LINE_L1-Tx1 167566 167694 20 + . . scaffold594 WUBlastX LINE_L1-Tx1 167799 168152 93 + . . scaffold594 TRF Tandem_Repeat 168211 168243 52 + . . scaffold594 WUBlastX LINE_L2 170404 171906 917 + . . scaffold594 GLEAN promoter 172235 173234 0.999949 + . ID=CGI_10016375; scaffold594 GLEAN mRNA 173235 195567 0.999949 + . ID=CGI_10016375; scaffold594 TRF Tandem_Repeat 178108 178184 97 + . . scaffold594 TRF Tandem_Repeat 191723 191760 51 + . . scaffold594 GLEAN mRNA 196323 196898 0.649524 - . ID=CGI_10016376; scaffold594 GLEAN promoter 196899 197898 0.649524 - . ID=CGI_10016376; scaffold594 GLEAN mRNA 205079 212992 0.979494 - . ID=CGI_10016377; scaffold594 TRF Tandem_Repeat 212772 212798 54 + . . scaffold594 GLEAN promoter 212811 213810 0.937811 + . ID=CGI_10016378; scaffold594 GLEAN promoter 212993 213992 0.979494 - . ID=CGI_10016377; scaffold594 GLEAN mRNA 213811 216579 0.937811 + . ID=CGI_10016378; scaffold594 GLEAN mRNA 222788 224870 0.990485 - . ID=CGI_10016379; scaffold594 GLEAN promoter 224871 225870 0.990485 - . ID=CGI_10016379; scaffold594 GLEAN promoter 227261 228260 0.291493 + . ID=CGI_10016380; scaffold594 GLEAN mRNA 228261 229439 0.291493 + . ID=CGI_10016380; scaffold594 WUBlastX DNA_Crypton 228948 229394 49 + . . scaffold594 TRF Tandem_Repeat 229398 229432 70 + . . scaffold594 GLEAN mRNA 232251 239437 1 - . ID=CGI_10016381; scaffold594 GLEAN promoter 239438 240437 1 - . ID=CGI_10016381; scaffold594 GLEAN promoter 244762 245761 0.998246 + . ID=CGI_10016382; scaffold594 GLEAN mRNA 245762 251303 0.998246 + . ID=CGI_10016382; scaffold594 WUBlastX LINE_L1-Tx1 259146 259355 44 + . . scaffold594 TRF Tandem_Repeat 259487 259548 124 + . . scaffold594 GLEAN promoter 259687 260686 0.998131 + . ID=CGI_10016383; scaffold594 GLEAN mRNA 260687 265167 0.998131 + . ID=CGI_10016383; scaffold594 TRF Tandem_Repeat 267816 267862 94 + . . scaffold594 WUBlastX LINE_L1-Tx1 269553 269660 61 + . . scaffold594 WUBlastX LINE_L1-Tx1 270766 271020 43 + . . scaffold594 WUBlastX LINE_L1-Tx1 271395 271700 36 + . . scaffold594 GLEAN promoter 271742 272741 0.999086 + . ID=CGI_10016384; scaffold594 GLEAN mRNA 272742 277647 0.999086 + . ID=CGI_10016384; scaffold594 TRF Tandem_Repeat 274116 274221 166 + . . scaffold594 TRF Tandem_Repeat 274116 274221 169 + . . scaffold594 TRF Tandem_Repeat 274937 275116 216 + . . scaffold594 TRF Tandem_Repeat 274937 275116 216 + . . scaffold594 TRF Tandem_Repeat 274938 275116 185 + . . scaffold594 GLEAN mRNA 280110 299837 0.998986 - . ID=CGI_10016385; scaffold594 TRF Tandem_Repeat 292354 292423 140 + . . scaffold594 GLEAN promoter 299838 300837 0.998986 - . ID=CGI_10016385; scaffold594 GLEAN mRNA 301296 310715 0.544675 - . ID=CGI_10016386; scaffold594 TRF Tandem_Repeat 309909 309957 98 + . . scaffold594 GLEAN promoter 310716 311715 0.544675 - . ID=CGI_10016386; scaffold594 TRF Tandem_Repeat 316897 316983 174 + . . scaffold594 TRF Tandem_Repeat 317241 317268 56 + . . scaffold594 TRF Tandem_Repeat 317525 317563 69 + . . scaffold594 GLEAN promoter 317706 318705 1 + . ID=CGI_10016387; scaffold594 GLEAN mRNA 318706 328200 1 + . ID=CGI_10016387; scaffold594 TRF Tandem_Repeat 321521 321566 92 + . . scaffold594 GLEAN mRNA 335531 337152 1 - . ID=CGI_10016388; scaffold594 GLEAN promoter 337153 338152 1 - . ID=CGI_10016388; scaffold594 TRF Tandem_Repeat 345329 345389 122 + . . scaffold594 TRF Tandem_Repeat 352860 352913 101 + . . scaffold594 TRF Tandem_Repeat 359312 359348 65 + . . scaffold594 GLEAN promoter 359724 360723 0.439563 + . ID=CGI_10016389; scaffold594 GLEAN mRNA 360724 407601 0.439563 + . ID=CGI_10016389; scaffold594 TRF Tandem_Repeat 373131 373165 70 + . . scaffold594 TRF Tandem_Repeat 373231 373294 83 + . . scaffold594 TRF Tandem_Repeat 376956 376982 54 + . . scaffold594 TRF Tandem_Repeat 377026 377094 129 + . . scaffold594 TRF Tandem_Repeat 379314 379443 93 + . . scaffold594 TRF Tandem_Repeat 379359 379505 73 + . . scaffold594 TRF Tandem_Repeat 380470 381243 768 + . . scaffold594 TRF Tandem_Repeat 381289 381326 60 + . . scaffold594 TRF Tandem_Repeat 389509 389568 104 + . . scaffold594 TRF Tandem_Repeat 401512 401558 94 + . . scaffold594 TRF Tandem_Repeat 410445 410481 53 + . . scaffold594 GLEAN promoter 410932 411931 0.733495 + . ID=CGI_10016390; scaffold594 GLEAN mRNA 411932 412828 0.733495 + . ID=CGI_10016390; scaffold594 GLEAN mRNA 414845 416168 0.999391 - . ID=CGI_10016391; scaffold594 WUBlastX LINE_RTE-X 415841 415930 21 - . . scaffold594 WUBlastX LINE_RTE-X 416070 416657 78 - . . scaffold594 GLEAN promoter 416169 417168 0.999391 - . ID=CGI_10016391; scaffold594 WUBlastX LINE_RTE-X 416400 416738 44 - . . scaffold594 WUBlastX LINE_RTE-X 416400 416657 80 - . . scaffold594 WUBlastX LINE_L1-Tx1 416820 417167 163 + . . scaffold594 GLEAN promoter 417783 418782 0.579442 + . ID=CGI_10016392; scaffold594 GLEAN mRNA 418783 425323 0.579442 + . ID=CGI_10016392; scaffold594 TRF Tandem_Repeat 420445 421569 1664 + . . scaffold594 TRF Tandem_Repeat 421596 421658 99 + . . scaffold594 TRF Tandem_Repeat 421600 421659 84 + . . scaffold594 GLEAN promoter 426686 427685 0.460619 + . ID=CGI_10016393; scaffold594 TRF Tandem_Repeat 426695 426767 128 + . . scaffold594 GLEAN mRNA 427686 431104 0.460619 + . ID=CGI_10016393; scaffold594 TRF Tandem_Repeat 432327 432383 60 + . . scaffold594 TRF Tandem_Repeat 435779 435904 95 + . . scaffold594 GLEAN mRNA 439236 439873 0.999973 - . ID=CGI_10016394; scaffold594 GLEAN promoter 439874 440873 0.999973 - . ID=CGI_10016394; scaffold594 GLEAN promoter 447541 448540 0.654454 + . ID=CGI_10016395; scaffold594 GLEAN mRNA 448541 450441 0.654454 + . ID=CGI_10016395; scaffold594 GLEAN promoter 455747 456746 0.999695 + . ID=CGI_10016396; scaffold594 GLEAN mRNA 456747 459098 0.999695 + . ID=CGI_10016396; scaffold594 TRF Tandem_Repeat 461628 461683 112 + . . scaffold595 WUBlastX LINE_CR1-L2 460 840 50 - . . scaffold595 WUBlastX LINE_CR1-L2 523 840 55 - . . scaffold595 WUBlastX LINE_CR1-L2 842 1387 112 - . . scaffold595 WUBlastX LINE_L2 1205 1525 40 - . . scaffold595 WUBlastX LINE_L2 1211 1450 79 - . . scaffold595 WUBlastX LINE_L1 4974 5171 27 - . . scaffold595 WUBlastX LINE_L1-Tx1 5022 5177 27 - . . scaffold595 WUBlastX LINE_L1 5046 5177 42 - . . scaffold595 WUBlastX LINE_L1 5103 5180 42 - . . scaffold595 WUBlastX LINE_L1 5116 5511 50 - . . scaffold595 WUBlastX LINE_L1-Tx1 5185 5520 130 - . . scaffold595 WUBlastX LINE_L1-Tx1 5500 5676 101 - . . scaffold595 TRF Tandem_Repeat 5677 5744 109 + . . scaffold595 WUBlastX LINE_RTE-BovB 12396 12788 35 + . . scaffold595 WUBlastX LINE_RTE-BovB 12503 12967 38 + . . scaffold595 WUBlastX LINE_RTE-BovB 12626 13195 173 + . . scaffold595 WUBlastX LINE_RTE-BovB 13174 13314 52 + . . scaffold595 TRF Tandem_Repeat 42657 42700 88 + . . scaffold595 TRF Tandem_Repeat 44120 44186 53 + . . scaffold595 TRF Tandem_Repeat 46313 46367 110 + . . scaffold595 TRF Tandem_Repeat 46770 46835 53 + . . scaffold595 TRF Tandem_Repeat 58512 58572 61 + . . scaffold595 TRF Tandem_Repeat 58513 58574 65 + . . scaffold595 TRF Tandem_Repeat 62476 62516 82 + . . scaffold595 WUBlastX LINE_L2 63922 64011 21 + . . scaffold595 WUBlastX LINE_L2 63943 63999 37 + . . scaffold595 WUBlastX LINE_L2 63962 64306 91 + . . scaffold595 WUBlastX LINE_L2 64052 64306 99 + . . scaffold595 WUBlastX LINE_L2 64297 64686 41 + . . scaffold595 WUBlastX LINE_L2 64303 64515 115 + . . scaffold595 GLEAN mRNA 66058 94029 0.989948 - . ID=CGI_10005863; scaffold595 TRF Tandem_Repeat 66630 66708 158 + . . scaffold595 TRF Tandem_Repeat 71490 71515 52 + . . scaffold595 WUBlastX LINE_RTE-X 86308 86574 61 - . . scaffold595 WUBlastX LTR_Ngaro 90081 90806 302 - . . scaffold595 WUBlastX LTR_Ngaro 90722 90997 54 - . . scaffold595 WUBlastX LTR_Ngaro 90988 91254 170 - . . scaffold595 WUBlastX LTR_Ngaro 91263 91796 413 - . . scaffold595 WUBlastX LTR_Ngaro 91762 92733 432 - . . scaffold595 WUBlastX LTR_Ngaro 91780 92553 509 - . . scaffold595 WUBlastX LTR_Ngaro 92576 93316 80 - . . scaffold595 WUBlastX LTR_Ngaro 92576 93196 84 - . . scaffold595 GLEAN promoter 94030 95029 0.989948 - . ID=CGI_10005863; scaffold595 WUBlastX DNA_Crypton 101224 101730 231 + . . scaffold595 WUBlastX DNA_Crypton 101875 102009 45 + . . scaffold595 WUBlastX DNA_Crypton 102177 102578 120 + . . scaffold595 WUBlastX DNA_Crypton 102240 102851 145 + . . scaffold595 TRF Tandem_Repeat 106102 106168 89 + . . scaffold595 TRF Tandem_Repeat 112173 112235 126 + . . scaffold595 TRF Tandem_Repeat 117227 117283 114 + . . scaffold595 TRF Tandem_Repeat 118601 118650 100 + . . scaffold596 WUBlastX DNA_Harbinger 1562 1726 76 - . . scaffold596 WUBlastX DNA_Harbinger 1580 1762 71 - . . scaffold596 WUBlastX LINE_L1-Tx1 3501 6374 1394 + . . scaffold596 WUBlastX LINE_L1 6141 6449 43 + . . scaffold596 TRF Tandem_Repeat 8984 9041 73 + . . scaffold596 GLEAN mRNA 12692 15724 1 - . ID=CGI_10009568; scaffold596 GLEAN promoter 15725 16724 1 - . ID=CGI_10009568; scaffold596 TRF Tandem_Repeat 17446 17486 82 + . . scaffold596 GLEAN mRNA 19331 23631 0.65113 - . ID=CGI_10009569; scaffold596 TRF Tandem_Repeat 20615 20657 86 + . . scaffold596 GLEAN promoter 23632 24631 0.65113 - . ID=CGI_10009569; scaffold596 GLEAN mRNA 23658 24152 0.996812 - . ID=CGI_10009570; scaffold596 GLEAN promoter 24153 25152 0.996812 - . ID=CGI_10009570; scaffold596 TRF Tandem_Repeat 28435 28479 90 + . . scaffold596 TRF Tandem_Repeat 29425 29483 118 + . . scaffold596 TRF Tandem_Repeat 31057 31108 104 + . . scaffold596 TRF Tandem_Repeat 31671 31910 372 + . . scaffold596 TRF Tandem_Repeat 32519 32555 74 + . . scaffold596 GLEAN promoter 34035 35034 0.992486 + . ID=CGI_10009571; scaffold596 GLEAN mRNA 35035 43455 0.992486 + . ID=CGI_10009571; scaffold596 TRF Tandem_Repeat 37808 37848 82 + . . scaffold596 TRF Tandem_Repeat 52284 52309 52 + . . scaffold596 TRF Tandem_Repeat 53516 53694 72 + . . scaffold596 TRF Tandem_Repeat 60102 61066 1231 + . . scaffold596 TRF Tandem_Repeat 61238 61275 51 + . . scaffold596 WUBlastX LINE_CR1-L2 63516 65507 1060 + . . scaffold596 GLEAN promoter 69370 70369 0.608742 + . ID=CGI_10009572; scaffold596 GLEAN mRNA 70370 84806 0.608742 + . ID=CGI_10009572; scaffold596 TRF Tandem_Repeat 74334 74375 57 + . . scaffold596 GLEAN promoter 84261 85260 1 + . ID=CGI_10009573; scaffold596 GLEAN mRNA 85261 86502 1 + . ID=CGI_10009573; scaffold596 GLEAN promoter 89417 90416 0.456762 + . ID=CGI_10009574; scaffold596 GLEAN mRNA 90417 100312 0.456762 + . ID=CGI_10009574; scaffold596 TRF Tandem_Repeat 94754 95293 630 + . . scaffold596 TRF Tandem_Repeat 95968 97581 1763 + . . scaffold596 TRF Tandem_Repeat 103004 103282 329 + . . scaffold596 TRF Tandem_Repeat 104723 105005 295 + . . scaffold596 WUBlastX LINE_L1-Tx1 108033 108647 275 + . . scaffold596 WUBlastX LINE_L1 108036 109442 154 + . . scaffold596 WUBlastX LINE_L1-Tx1 108623 109024 185 + . . scaffold596 WUBlastX LINE_L1-Tx1 109053 109517 77 + . . scaffold596 WUBlastX LINE_L1-Tx1 110068 110505 34 + . . scaffold596 WUBlastX LINE_L1 110185 110502 60 + . . scaffold596 WUBlastX LINE_L1-Tx1 110245 110502 146 + . . scaffold596 WUBlastX LINE_L1-Tx1 110305 110508 159 + . . scaffold596 WUBlastX LINE_L1 110444 110656 122 + . . scaffold596 WUBlastX LINE_L1-Tx1 110556 111278 329 + . . scaffold596 WUBlastX LINE_L1-Tx1 110640 111245 382 + . . scaffold596 WUBlastX LINE_L1-Tx1 110640 111476 226 + . . scaffold596 WUBlastX LINE_L1-Tx1 110655 111728 222 + . . scaffold596 GLEAN promoter 114529 115528 0.40533 + . ID=CGI_10009575; scaffold596 GLEAN mRNA 115529 167841 0.40533 + . ID=CGI_10009575; scaffold596 TRF Tandem_Repeat 130757 130819 81 + . . scaffold596 TRF Tandem_Repeat 140910 141025 56 + . . scaffold596 TRF Tandem_Repeat 140979 141025 58 + . . scaffold596 TRF Tandem_Repeat 144163 144199 56 + . . scaffold596 TRF Tandem_Repeat 145183 145934 1328 + . . scaffold596 GLEAN promoter 167405 168404 0.99343 + . ID=CGI_10009576; scaffold596 GLEAN mRNA 168405 189189 0.99343 + . ID=CGI_10009576; scaffold596 GLEAN mRNA 190755 207695 0.36732 - . ID=CGI_10009577; scaffold596 WUBlastX RC_Helitron 195556 195774 95 - . . scaffold596 GLEAN promoter 207696 208695 0.36732 - . ID=CGI_10009577; scaffold596 GLEAN promoter 208515 209514 0.999343 + . ID=CGI_10009578; scaffold596 WUBlastX LTR_Gypsy 208886 209152 43 + . . scaffold596 GLEAN mRNA 209515 220415 0.999343 + . ID=CGI_10009578; scaffold596 WUBlastX LTR_Gypsy 209902 210126 88 + . . scaffold596 WUBlastX LTR_Gypsy 209983 210147 100 + . . scaffold596 WUBlastX LTR_Gypsy 210129 210215 36 + . . scaffold596 WUBlastX DNA_TcMar-Tc1 213673 213777 68 - . . scaffold596 WUBlastX DNA_TcMar-Tc1 213767 214351 156 - . . scaffold596 WUBlastX DNA_TcMar-Tc1 213833 214309 200 - . . scaffold596 TRF Tandem_Repeat 217956 217981 52 + . . scaffold596 TRF Tandem_Repeat 217981 218032 104 + . . scaffold596 GLEAN promoter 225856 226855 1 + . ID=CGI_10009579; scaffold596 GLEAN mRNA 226856 231374 1 + . ID=CGI_10009579; scaffold597 GLEAN promoter 2125 3124 0.889923 + . ID=CGI_10004926; scaffold597 GLEAN mRNA 3125 6883 0.889923 + . ID=CGI_10004926; scaffold597 WUBlastX LTR_Gypsy 20893 21411 36 + . . scaffold597 WUBlastX LTR_Gypsy-Cigr 20902 21321 110 + . . scaffold597 GLEAN promoter 29096 30095 0.999676 + . ID=CGI_10004927; scaffold597 GLEAN mRNA 30096 40610 0.999676 + . ID=CGI_10004927; scaffold597 TRF Tandem_Repeat 32292 32320 58 + . . scaffold597 TRF Tandem_Repeat 33219 33508 449 + . . scaffold597 TRF Tandem_Repeat 33224 33508 439 + . . scaffold597 WUBlastX LINE_RTE-X 35079 35504 20 - . . scaffold597 WUBlastX LINE_RTE-BovB 35106 35339 37 - . . scaffold597 WUBlastX LINE_CR1 35513 35911 77 - . . scaffold597 WUBlastX LINE_CR1 35579 35911 109 - . . scaffold597 WUBlastX LINE_L1-Tx1 35928 36509 119 - . . scaffold597 WUBlastX LINE_RTE-X 35928 36401 143 - . . scaffold597 WUBlastX LINE_RTE-RTE 35928 36239 163 - . . scaffold597 WUBlastX LINE_I 35928 36797 89 - . . scaffold597 WUBlastX LINE_CR1 37004 37168 31 - . . scaffold597 WUBlastX LINE_CR1 37201 37599 77 - . . scaffold597 WUBlastX LINE_CR1 37267 37599 109 - . . scaffold597 WUBlastX LINE_I 37616 38485 89 - . . scaffold597 WUBlastX LINE_L1-Tx1 37616 38197 119 - . . scaffold597 WUBlastX LINE_RTE-X 37616 38089 143 - . . scaffold597 WUBlastX LINE_RTE-RTE 37616 37927 163 - . . scaffold597 TRF Tandem_Repeat 41372 41396 50 + . . scaffold597 TRF Tandem_Repeat 41396 41427 64 + . . scaffold597 TRF Tandem_Repeat 43757 43807 102 + . . scaffold597 WUBlastX LINE_RTE-BovB 43808 44113 77 - . . scaffold597 WUBlastX LINE_RTE-BovB 43808 43948 81 - . . scaffold597 WUBlastX LINE_RTE-BovB 43933 44265 77 - . . scaffold597 GLEAN promoter 44144 45143 0.528485 + . ID=CGI_10004928; scaffold597 GLEAN mRNA 45144 46289 0.528485 + . ID=CGI_10004928; scaffold597 WUBlastX LINE_L2 48292 48426 33 - . . scaffold597 WUBlastX LINE_CR1-L2 48434 48481 20 - . . scaffold597 WUBlastX LINE_CR1-L2 48579 48794 81 - . . scaffold597 WUBlastX LINE_CR1-L2 48579 48740 95 - . . scaffold597 WUBlastX LINE_CR1-L2 48585 48710 106 - . . scaffold597 GLEAN promoter 49691 50690 0.543434 + . ID=CGI_10004929; scaffold597 GLEAN mRNA 50691 76924 0.543434 + . ID=CGI_10004929; scaffold597 TRF Tandem_Repeat 62122 62345 340 + . . scaffold597 TRF Tandem_Repeat 66638 66743 114 + . . scaffold597 TRF Tandem_Repeat 67101 67133 66 + . . scaffold597 TRF Tandem_Repeat 72908 72968 122 + . . scaffold597 TRF Tandem_Repeat 73659 73797 253 + . . scaffold597 GLEAN mRNA 78607 89731 0.999999 - . ID=CGI_10004930; scaffold597 WUBlastX LINE_L1 80379 80453 26 + . . scaffold597 WUBlastX LINE_L1-Tx1 81083 81535 244 + . . scaffold597 WUBlastX LINE_L1-Tx1 81547 82131 117 + . . scaffold597 TRF Tandem_Repeat 87302 87343 84 + . . scaffold597 GLEAN promoter 89732 90731 0.999999 - . ID=CGI_10004930; scaffold597 TRF Tandem_Repeat 90624 90674 50 + . . scaffold597 TRF Tandem_Repeat 90631 90674 54 + . . scaffold597 WUBlastX LINE_RTE-X 90851 92734 777 - . . scaffold597 WUBlastX LINE_RTE-X 91139 94105 570 - . . scaffold597 WUBlastX LINE_CR1 93779 94207 74 - . . scaffold597 WUBlastX LINE_L1-Tx1 94283 95068 126 - . . scaffold597 WUBlastX LINE_L1 94286 94936 190 - . . scaffold597 WUBlastX LTR_ERV1 94688 95149 60 - . . scaffold597 WUBlastX LTR_Gypsy 98120 98875 107 + . . scaffold597 WUBlastX LTR_Gypsy 98120 98680 111 + . . scaffold597 WUBlastX LTR_ERVL 98882 98995 25 + . . scaffold597 WUBlastX LTR_Gypsy 98909 99001 28 + . . scaffold597 WUBlastX LTR_Gypsy 98924 99376 79 + . . scaffold597 WUBlastX LTR_Gypsy 98933 99214 115 + . . scaffold597 WUBlastX LTR_Gypsy 99349 100077 460 + . . scaffold597 WUBlastX LTR_Gypsy 100067 100189 59 + . . scaffold597 WUBlastX LTR_Gypsy 100097 100672 167 + . . scaffold597 WUBlastX LTR_Gypsy 100185 100442 199 + . . scaffold597 WUBlastX LTR_Gypsy 100188 100604 194 + . . scaffold597 WUBlastX LTR_Gypsy 100672 101025 181 + . . scaffold597 WUBlastX LTR_Gypsy 100672 100875 191 + . . scaffold597 WUBlastX LTR_Gypsy 101106 101834 586 + . . scaffold597 WUBlastX LTR_Gypsy 101812 102780 226 + . . scaffold597 WUBlastX LTR_Gypsy 101812 102363 239 + . . scaffold598 GLEAN promoter 303 1302 0.992797 + . ID=CGI_10001778; scaffold598 WUBlastX LTR_Ngaro 679 1170 188 + . . scaffold598 WUBlastX LTR_Ngaro 796 1302 66 + . . scaffold598 GLEAN mRNA 1303 4771 0.992797 + . ID=CGI_10001778; scaffold598 WUBlastX LTR_Gypsy 1349 2302 41 + . . scaffold598 WUBlastX LTR_Ngaro 1493 3094 1034 + . . scaffold598 WUBlastX LTR_Ngaro 3064 3966 416 + . . scaffold598 WUBlastX LINE_RTE-X 4298 4753 64 + . . scaffold598 GLEAN mRNA 6664 7095 0.531613 - . ID=CGI_10001779; scaffold598 GLEAN promoter 7096 8095 0.531613 - . ID=CGI_10001779; scaffold598 TRF Tandem_Repeat 12293 12461 114 + . . scaffold598 TRF Tandem_Repeat 12371 12461 83 + . . scaffold598 WUBlastX DNA_TcMar-Pogo 13715 13834 40 + . . scaffold598 WUBlastX DNA_TcMar-Tigge 13825 13896 32 + . . scaffold598 WUBlastX DNA_TcMar-Pogo 13851 14351 90 + . . scaffold598 WUBlastX DNA_TcMar-Pogo 13893 14687 79 + . . scaffold598 WUBlastX DNA_TcMar-Pogo 13893 14561 81 + . . scaffold598 GLEAN promoter 14542 15541 0.977675 + . ID=CGI_10001780; scaffold598 TRF Tandem_Repeat 14980 15071 130 + . . scaffold598 GLEAN mRNA 15542 22695 0.977675 + . ID=CGI_10001780; scaffold598 GLEAN mRNA 25736 26137 0.694346 - . ID=CGI_10001781; scaffold598 GLEAN promoter 26138 27137 0.694346 - . ID=CGI_10001781; scaffold598 GLEAN promoter 27134 28133 1 + . ID=CGI_10001782; scaffold598 GLEAN mRNA 28134 30627 1 + . ID=CGI_10001782; scaffold599 WUBlastX LTR_Ngaro 261 518 24 + . . scaffold599 WUBlastX LTR_Ngaro 330 533 43 + . . scaffold599 WUBlastX LTR_Ngaro 551 1057 182 + . . scaffold599 WUBlastX LTR_Ngaro 1035 1160 20 + . . scaffold599 TRF Tandem_Repeat 1829 1853 50 + . . scaffold599 WUBlastX LTR_Ngaro 1993 2274 47 + . . scaffold599 WUBlastX DNA_Harbinger 9454 10152 230 - . . scaffold599 TRF Tandem_Repeat 10358 10386 58 + . . scaffold599 TRF Tandem_Repeat 10530 10849 559 + . . scaffold599 WUBlastX LINE_Penelope 10868 11326 45 - . . scaffold599 WUBlastX LINE_Penelope 10943 11275 91 - . . scaffold599 WUBlastX LINE_Penelope 10982 11329 66 - . . scaffold599 TRF Tandem_Repeat 25581 25623 54 + . . scaffold599 TRF Tandem_Repeat 25640 25667 56 + . . scaffold599 TRF Tandem_Repeat 26286 26539 391 + . . scaffold599 WUBlastX LTR_Gypsy 26548 26805 108 + . . scaffold599 WUBlastX LTR_Gypsy 26596 28377 284 + . . scaffold599 WUBlastX LTR_Gypsy 26965 28368 386 + . . scaffold599 WUBlastX LTR_Gypsy 27220 28362 552 + . . scaffold599 GLEAN promoter 28083 29082 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Gypsy 28361 28492 43 + . . scaffold599 WUBlastX LTR_Copia 28616 28711 21 + . . scaffold599 WUBlastX LTR_Pao 28709 28924 56 + . . scaffold599 WUBlastX LTR_Pao 28790 28936 66 + . . scaffold599 GLEAN mRNA 29083 62122 0.696781 + . ID=CGI_10021706; scaffold599 WUBlastX LTR_Pao 29982 30164 25 + . . scaffold599 WUBlastX LTR_Pao 30411 30674 30 + . . scaffold599 WUBlastX LTR_Pao 30712 30822 20 + . . scaffold599 WUBlastX LTR_Pao 31237 31500 167 + . . scaffold599 WUBlastX LTR_Ngaro 32195 32395 104 - . . scaffold599 WUBlastX LTR_Ngaro 32261 32392 110 - . . scaffold599 WUBlastX LTR_Ngaro 32397 32705 199 - . . scaffold599 WUBlastX LTR_Ngaro 32397 32864 162 - . . scaffold599 WUBlastX LTR_Ngaro 32970 33563 50 - . . scaffold599 WUBlastX LTR_Ngaro 32976 33368 100 - . . scaffold599 GLEAN mRNA 48849 56099 1 - . ID=CGI_10021707; scaffold599 GLEAN promoter 56100 57099 1 - . ID=CGI_10021707; scaffold599 TRF Tandem_Repeat 64856 64897 84 + . . scaffold599 WUBlastX DNA_Maverick 73387 73686 76 + . . scaffold599 WUBlastX DNA_Maverick 73435 73683 90 + . . scaffold599 WUBlastX DNA_Maverick 73480 73728 127 + . . scaffold599 TRF Tandem_Repeat 80906 80960 67 + . . scaffold599 GLEAN mRNA 92916 95932 0.987393 - . ID=CGI_10021708; scaffold599 GLEAN promoter 95933 96932 0.987393 - . ID=CGI_10021708; scaffold599 TRF Tandem_Repeat 111229 111882 1057 + . . scaffold599 GLEAN promoter 113421 114420 0.618241 + . ID=CGI_10021709; scaffold599 WUBlastX LINE_L2 113574 114182 85 + . . scaffold599 WUBlastX LINE_L1 113664 114170 105 + . . scaffold599 GLEAN mRNA 114421 114690 0.618241 + . ID=CGI_10021709; scaffold599 WUBlastX LINE_L1 115050 115754 102 + . . scaffold599 WUBlastX LINE_L1-Tx1 115176 115757 328 + . . scaffold599 TRF Tandem_Repeat 115817 115867 66 + . . scaffold599 WUBlastX LINE_L1-Tx1 116378 117076 36 + . . scaffold599 WUBlastX LINE_L1-Tx1 116483 117829 753 + . . scaffold599 WUBlastX LINE_L1-Tx1 117796 118812 332 + . . scaffold599 WUBlastX LINE_L1-Tx1 119006 119389 23 + . . scaffold599 TRF Tandem_Repeat 119994 120055 72 + . . scaffold599 TRF Tandem_Repeat 145941 146828 1226 + . . scaffold599 TRF Tandem_Repeat 155601 155690 72 + . . scaffold599 TRF Tandem_Repeat 155605 155679 109 + . . scaffold599 TRF Tandem_Repeat 169962 170039 156 + . . scaffold599 TRF Tandem_Repeat 175681 175711 62 + . . scaffold599 TRF Tandem_Repeat 176649 176674 52 + . . scaffold599 GLEAN promoter 185176 186175 0.618241 + . ID=CGI_10021710; scaffold599 GLEAN mRNA 186176 186523 0.618241 + . ID=CGI_10021710; scaffold599 TRF Tandem_Repeat 188911 188939 58 + . . scaffold599 TRF Tandem_Repeat 190483 190520 58 + . . scaffold599 GLEAN mRNA 192167 203919 0.82107 - . ID=CGI_10021711; scaffold599 TRF Tandem_Repeat 199042 199085 74 + . . scaffold599 GLEAN promoter 203920 204919 0.82107 - . ID=CGI_10021711; scaffold599 WUBlastX DNA_TcMar-Marin 209407 209643 77 - . . scaffold599 TRF Tandem_Repeat 209982 210025 88 + . . scaffold599 WUBlastX DNA_Sola 219224 219415 51 - . . scaffold599 WUBlastX DNA_Sola 219394 219648 107 - . . scaffold599 WUBlastX DNA_Sola 222106 222486 118 - . . scaffold599 GLEAN mRNA 243732 256859 0.998754 - . ID=CGI_10021712; scaffold599 GLEAN promoter 250821 251820 0.999675 + . ID=CGI_10021713; scaffold599 GLEAN mRNA 251821 273096 0.999675 + . ID=CGI_10021713; scaffold599 TRF Tandem_Repeat 252056 252113 98 + . . scaffold599 GLEAN promoter 256860 257859 0.998754 - . ID=CGI_10021712; scaffold599 TRF Tandem_Repeat 265862 265888 54 + . . scaffold599 TRF Tandem_Repeat 266735 266762 56 + . . scaffold599 WUBlastX LINE_RTE-X 278370 278576 49 + . . scaffold599 WUBlastX LINE_RTE-X 278394 278561 64 + . . scaffold599 GLEAN mRNA 290478 340724 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX LINE_RTE-X 292563 292724 27 + . . scaffold599 WUBlastX LINE_RTE-X 292662 292724 37 + . . scaffold599 WUBlastX LINE_RTE-X 293716 293817 61 + . . scaffold599 TRF Tandem_Repeat 305987 306033 94 + . . scaffold599 WUBlastX LINE_L1-Tx1 316787 317248 37 + . . scaffold599 WUBlastX LINE_L1-Tx1 316976 317296 77 + . . scaffold599 WUBlastX LINE_L1-Tx1 316976 317398 51 + . . scaffold599 TRF Tandem_Repeat 333128 333154 54 + . . scaffold599 WUBlastX DNA_P 340699 341022 42 - . . scaffold599 GLEAN promoter 340725 341724 0.424971 - . ID=CGI_10021714; scaffold599 WUBlastX DNA_P 340768 341031 93 - . . scaffold599 WUBlastX DNA_Kolobok-IS4 340864 341097 62 - . . scaffold599 GLEAN mRNA 342758 350854 0.604259 - . ID=CGI_10021715; scaffold599 TRF Tandem_Repeat 345975 346214 257 + . . scaffold599 TRF Tandem_Repeat 349307 349338 64 + . . scaffold599 GLEAN promoter 350855 351854 0.604259 - . ID=CGI_10021715; scaffold599 WUBlastX LTR_Ngaro 354162 354584 77 + . . scaffold599 WUBlastX LTR_Ngaro 354180 354782 77 + . . scaffold599 WUBlastX LTR_Ngaro 354276 354581 125 + . . scaffold599 WUBlastX LTR_ERV-Foamy 354713 355450 50 + . . scaffold599 WUBlastX LTR_Ngaro 354926 355447 303 + . . scaffold599 WUBlastX LTR_Ngaro 355462 356046 309 + . . scaffold599 WUBlastX LTR_Ngaro 356061 356489 114 + . . scaffold599 WUBlastX LTR_Ngaro 356453 356710 47 + . . scaffold599 WUBlastX LTR_Ngaro 356668 356916 62 + . . scaffold599 WUBlastX LTR_Ngaro 356707 356919 138 + . . scaffold599 GLEAN promoter 358230 359229 0.999949 + . ID=CGI_10021716; scaffold599 GLEAN mRNA 359230 367385 0.999949 + . ID=CGI_10021716; scaffold599 TRF Tandem_Repeat 364631 364657 54 + . . scaffold599 GLEAN promoter 368163 369162 0.544852 + . ID=CGI_10021717; scaffold599 GLEAN mRNA 369163 370989 0.544852 + . ID=CGI_10021717; scaffold599 GLEAN mRNA 372668 382241 0.88989 - . ID=CGI_10021718; scaffold599 WUBlastX LINE_RTE-X 375339 375722 128 - . . scaffold599 WUBlastX LINE_RTE-X 375396 375824 103 - . . scaffold599 WUBlastX LINE_RTE-X 375462 375719 166 - . . scaffold599 GLEAN promoter 382242 383241 0.88989 - . ID=CGI_10021718; scaffold599 GLEAN promoter 382899 383898 0.999675 + . ID=CGI_10021719; scaffold599 GLEAN mRNA 383899 392019 0.999675 + . ID=CGI_10021719; scaffold599 TRF Tandem_Repeat 384320 384349 60 + . . scaffold599 TRF Tandem_Repeat 384349 384393 65 + . . scaffold599 TRF Tandem_Repeat 386185 386233 98 + . . scaffold599 TRF Tandem_Repeat 389094 389124 62 + . . scaffold599 TRF Tandem_Repeat 389378 389421 88 + . . scaffold599 GLEAN promoter 393104 394103 0.884096 + . ID=CGI_10021720; scaffold599 GLEAN mRNA 394104 407665 0.884096 + . ID=CGI_10021720; scaffold599 TRF Tandem_Repeat 395167 395218 104 + . . scaffold599 TRF Tandem_Repeat 397682 397724 86 + . . scaffold599 TRF Tandem_Repeat 400725 401683 944 + . . scaffold599 TRF Tandem_Repeat 400728 401683 1129 + . . scaffold599 TRF Tandem_Repeat 400882 401787 723 + . . scaffold599 TRF Tandem_Repeat 402012 403851 2430 + . . scaffold599 TRF Tandem_Repeat 406645 406741 87 + . . scaffold599 GLEAN promoter 408997 409996 0.980857 + . ID=CGI_10021721; scaffold599 GLEAN mRNA 409997 417426 0.980857 + . ID=CGI_10021721; scaffold599 TRF Tandem_Repeat 411329 411376 96 + . . scaffold599 GLEAN mRNA 419209 419871 0.909018 - . ID=CGI_10021722; scaffold599 GLEAN promoter 419872 420871 0.909018 - . ID=CGI_10021722; scaffold599 WUBlastX LINE_RTE-X 420160 420789 85 - . . scaffold599 WUBlastX LINE_RTE-X 420295 420789 108 - . . scaffold599 WUBlastX LINE_RTE-X 420788 421354 284 - . . scaffold599 GLEAN promoter 424168 425167 0.999984 + . ID=CGI_10021723; scaffold599 TRF Tandem_Repeat 424358 424425 136 + . . scaffold599 GLEAN mRNA 425168 427864 0.999984 + . ID=CGI_10021723; scaffold599 TRF Tandem_Repeat 432292 433158 1260 + . . scaffold599 GLEAN promoter 435993 436992 1 + . ID=CGI_10021724; scaffold599 GLEAN mRNA 436993 450873 1 + . ID=CGI_10021724; scaffold599 TRF Tandem_Repeat 439970 440015 92 + . . scaffold599 TRF Tandem_Repeat 440013 440044 64 + . . scaffold599 TRF Tandem_Repeat 441200 441241 75 + . . scaffold599 TRF Tandem_Repeat 441946 441980 70 + . . scaffold599 TRF Tandem_Repeat 449216 449725 569 + . . scaffold599 GLEAN mRNA 453980 472237 0.999985 - . ID=CGI_10021725; scaffold599 TRF Tandem_Repeat 454162 454204 86 + . . scaffold599 GLEAN promoter 455252 456251 0.953927 + . ID=CGI_10021726; scaffold599 GLEAN mRNA 456252 477114 0.953927 + . ID=CGI_10021726; scaffold599 TRF Tandem_Repeat 462365 462435 117 + . . scaffold599 TRF Tandem_Repeat 463751 463788 60 + . . scaffold599 WUBlastX DNA_IS4EU 463931 464197 64 + . . scaffold599 WUBlastX DNA_IS4EU 464556 464714 31 + . . scaffold599 WUBlastX DNA_IS4EU 465379 466440 394 - . . scaffold599 WUBlastX DNA_IS4EU 467549 468610 394 - . . scaffold599 WUBlastX DNA_IS4EU 468832 469437 232 + . . scaffold599 GLEAN promoter 472238 473237 0.999985 - . ID=CGI_10021725; scaffold599 TRF Tandem_Repeat 472486 473240 960 + . . scaffold599 TRF Tandem_Repeat 474201 474325 74 + . . scaffold599 GLEAN mRNA 478283 491770 0.99915 - . ID=CGI_10021727; scaffold599 WUBlastX LINE_L2 479820 480479 33 - . . scaffold599 WUBlastX RC_Helitron 479931 481550 789 - . . scaffold599 GLEAN promoter 482470 483469 1 + . ID=CGI_10021728; scaffold599 GLEAN mRNA 483470 484330 1 + . ID=CGI_10021728; scaffold599 WUBlastX DNA_Kolobok 483697 484017 85 - . . scaffold599 TRF Tandem_Repeat 486782 486840 118 + . . scaffold599 TRF Tandem_Repeat 487187 487219 66 + . . scaffold599 GLEAN promoter 489544 490543 1 + . ID=CGI_10021729; scaffold599 GLEAN mRNA 490544 495661 1 + . ID=CGI_10021729; scaffold599 GLEAN promoter 491771 492770 0.99915 - . ID=CGI_10021727; scaffold599 TRF Tandem_Repeat 492920 492972 61 + . . scaffold599 TRF Tandem_Repeat 492925 492959 52 + . . scaffold599 TRF Tandem_Repeat 492937 492972 54 + . . scaffold599 TRF Tandem_Repeat 493595 493655 122 + . . scaffold599 GLEAN promoter 495208 496207 0.999676 + . ID=CGI_10021730; scaffold599 GLEAN mRNA 496208 505803 0.999676 + . ID=CGI_10021730; scaffold599 GLEAN mRNA 508227 514776 1 - . ID=CGI_10021731; scaffold599 GLEAN promoter 512083 513082 0.5448 + . ID=CGI_10021732; scaffold599 GLEAN mRNA 513083 527035 0.5448 + . ID=CGI_10021732; scaffold599 TRF Tandem_Repeat 513479 513526 80 + . . scaffold599 GLEAN promoter 514777 515776 1 - . ID=CGI_10021731; scaffold599 TRF Tandem_Repeat 515777 515864 167 + . . scaffold599 GLEAN mRNA 525159 532616 0.593391 - . ID=CGI_10021733; scaffold599 TRF Tandem_Repeat 531477 531542 125 + . . scaffold599 GLEAN promoter 532617 533616 0.593391 - . ID=CGI_10021733; scaffold599 TRF Tandem_Repeat 537309 538364 1338 + . . scaffold599 TRF Tandem_Repeat 538529 538583 76 + . . scaffold599 TRF Tandem_Repeat 539713 539771 118 + . . scaffold599 TRF Tandem_Repeat 554611 554635 50 + . . scaffold599 GLEAN mRNA 557782 563596 0.889691 - . ID=CGI_10021734; scaffold599 GLEAN promoter 563597 564596 0.889691 - . ID=CGI_10021734; scaffold599 TRF Tandem_Repeat 566092 566145 108 + . . scaffold599 WUBlastX LINE_L1-Tx1 569370 569810 21 - . . scaffold599 WUBlastX LINE_L1 569460 569816 32 - . . scaffold599 WUBlastX LINE_L1 569595 569774 95 - . . scaffold599 WUBlastX LINE_L1-Tx1 569610 569813 83 - . . scaffold599 WUBlastX LINE_L1 569807 570268 108 - . . scaffold599 WUBlastX LINE_L1 570274 570444 61 - . . scaffold599 TRF Tandem_Repeat 572425 572480 112 + . . scaffold599 GLEAN promoter 575418 576417 0.9835 + . ID=CGI_10021735; scaffold599 GLEAN mRNA 576418 594078 0.9835 + . ID=CGI_10021735; scaffold599 GLEAN mRNA 592869 593765 0.649573 - . ID=CGI_10021736; scaffold599 GLEAN promoter 593766 594765 0.649573 - . ID=CGI_10021736; scaffold599 GLEAN mRNA 599084 599446 0.999955 - . ID=CGI_10021737; scaffold599 GLEAN promoter 599447 600446 0.999955 - . ID=CGI_10021737; scaffold599 TRF Tandem_Repeat 603841 603909 51 + . . scaffold599 TRF Tandem_Repeat 603845 603895 61 + . . scaffold599 TRF Tandem_Repeat 603845 603909 51 + . . scaffold599 TRF Tandem_Repeat 608929 609215 322 + . . scaffold599 GLEAN mRNA 617735 617932 0.369216 - . ID=CGI_10021738; scaffold599 GLEAN promoter 617855 618854 0.269076 + . ID=CGI_10021739; scaffold599 GLEAN promoter 617933 618932 0.369216 - . ID=CGI_10021738; scaffold599 GLEAN mRNA 618855 645527 0.269076 + . ID=CGI_10021739; scaffold599 TRF Tandem_Repeat 650543 650569 54 + . . scaffold599 TRF Tandem_Repeat 672403 672478 152 + . . scaffold599 TRF Tandem_Repeat 687329 687385 96 + . . scaffold599 TRF Tandem_Repeat 691422 691464 86 + . . scaffold599 GLEAN mRNA 692333 692587 0.649524 - . ID=CGI_10021740; scaffold599 GLEAN promoter 692588 693587 0.649524 - . ID=CGI_10021740; scaffold599 WUBlastX DNA_Crypton 695509 695817 104 + . . scaffold599 WUBlastX DNA_Crypton 696497 696646 22 + . . scaffold599 TRF Tandem_Repeat 704413 704751 360 + . . scaffold599 GLEAN mRNA 705479 707314 0.734378 - . ID=CGI_10021741; scaffold599 GLEAN promoter 707315 708314 0.734378 - . ID=CGI_10021741; scaffold6 WUBlastX LINE_R2 21968 22801 261 - . . scaffold6 WUBlastX LINE_R2 22792 22980 61 - . . scaffold6 WUBlastX LINE_R2 22950 23054 23 - . . scaffold6 WUBlastX LINE_R2 23001 23105 29 - . . scaffold6 WUBlastX LINE_L2 23048 24364 108 - . . scaffold6 WUBlastX LINE_L2 23093 24196 396 - . . scaffold6 WUBlastX LINE_CR1-L2 25105 25692 203 - . . scaffold6 WUBlastX LINE_L1 25150 25860 50 - . . scaffold6 TRF Tandem_Repeat 32820 32869 66 + . . scaffold6 WUBlastX DNA_En-Spm 39203 40303 466 - . . scaffold6 WUBlastX DNA_En-Spm 40273 41478 364 - . . scaffold6 GLEAN mRNA 42172 46797 0.325879 - . ID=CGI_10022292; scaffold6 GLEAN promoter 46798 47797 0.325879 - . ID=CGI_10022292; scaffold6 TRF Tandem_Repeat 52101 52170 97 + . . scaffold6 TRF Tandem_Repeat 52102 52167 80 + . . scaffold6 TRF Tandem_Repeat 53388 54634 1765 + . . scaffold6 TRF Tandem_Repeat 57874 57925 104 + . . scaffold6 TRF Tandem_Repeat 64389 64484 108 + . . scaffold6 TRF Tandem_Repeat 66603 66861 401 + . . scaffold6 TRF Tandem_Repeat 66603 67069 570 + . . scaffold6 TRF Tandem_Repeat 66603 67069 577 + . . scaffold6 TRF Tandem_Repeat 66913 67069 296 + . . scaffold6 WUBlastX LINE_L1-Tx1 67851 69035 238 + . . scaffold6 TRF Tandem_Repeat 72893 72959 134 + . . scaffold6 TRF Tandem_Repeat 73006 73032 54 + . . scaffold6 TRF Tandem_Repeat 74089 74166 56 + . . scaffold6 WUBlastX LTR_Pao 78538 78972 32 - . . scaffold6 WUBlastX LTR_Pao 78583 78939 51 - . . scaffold6 GLEAN promoter 90412 91411 1 + . ID=CGI_10022293; scaffold6 GLEAN mRNA 91412 92524 1 + . ID=CGI_10022293; scaffold6 TRF Tandem_Repeat 95864 95952 171 + . . scaffold6 GLEAN promoter 104160 105159 1 + . ID=CGI_10022294; scaffold6 GLEAN mRNA 105160 106494 1 + . ID=CGI_10022294; scaffold6 WUBlastX LTR_Ngaro 107723 107818 76 - . . scaffold6 WUBlastX LTR_Ngaro 107839 108231 119 - . . scaffold6 WUBlastX LINE_L1-Tx1 109044 109391 31 - . . scaffold6 WUBlastX LINE_Penelope 115968 116078 36 + . . scaffold6 GLEAN promoter 117432 118431 0.768363 + . ID=CGI_10022295; scaffold6 TRF Tandem_Repeat 117834 117880 85 + . . scaffold6 GLEAN promoter 118353 119352 0.999998 + . ID=CGI_10022296; scaffold6 GLEAN mRNA 118432 119352 0.768363 + . ID=CGI_10022295; scaffold6 GLEAN mRNA 119353 119808 0.999998 + . ID=CGI_10022296; scaffold6 GLEAN mRNA 120164 144778 0.978215 - . ID=CGI_10022297; scaffold6 WUBlastX LINE_Penelope 121556 121660 29 + . . scaffold6 WUBlastX LINE_Penelope 121744 122133 24 + . . scaffold6 TRF Tandem_Repeat 123654 123704 102 + . . scaffold6 WUBlastX LTR_Pao 125742 126248 37 + . . scaffold6 WUBlastX LTR_Pao 126238 127434 474 + . . scaffold6 WUBlastX LTR_Pao 126541 127434 482 + . . scaffold6 WUBlastX LTR_Pao 127458 128726 998 + . . scaffold6 WUBlastX LTR_Pao 128628 128786 47 + . . scaffold6 WUBlastX LTR_Pao 128783 129556 549 + . . scaffold6 WUBlastX LTR_Pao 129547 129606 20 + . . scaffold6 WUBlastX LTR_Pao 129567 130256 241 + . . scaffold6 WUBlastX LTR_Pao 129672 130253 467 + . . scaffold6 WUBlastX LTR_Pao 130255 130353 65 + . . scaffold6 TRF Tandem_Repeat 135458 135504 94 + . . scaffold6 TRF Tandem_Repeat 139853 139877 50 + . . scaffold6 TRF Tandem_Repeat 140694 140749 112 + . . scaffold6 GLEAN promoter 144779 145778 0.978215 - . ID=CGI_10022297; scaffold6 GLEAN mRNA 148712 161183 0.354496 - . ID=CGI_10022298; scaffold6 TRF Tandem_Repeat 159779 159914 103 + . . scaffold6 TRF Tandem_Repeat 160253 160292 80 + . . scaffold6 GLEAN promoter 161184 162183 0.354496 - . ID=CGI_10022298; scaffold6 WUBlastX LINE_L1 162813 162923 32 + . . scaffold6 WUBlastX LINE_L1 162872 163195 70 + . . scaffold6 WUBlastX LINE_L1-Tx1 162932 163798 94 + . . scaffold6 WUBlastX LINE_L1-Tx1 162932 163651 426 + . . scaffold6 WUBlastX LINE_L1-Tx1 163755 164219 29 + . . scaffold6 WUBlastX LINE_L1-Tx1 164249 164626 37 + . . scaffold6 WUBlastX LINE_L1-Tx1 164249 164479 82 + . . scaffold6 WUBlastX LINE_L1-Tx1 164285 164467 84 + . . scaffold6 WUBlastX LINE_RTE-X 164759 164968 107 + . . scaffold6 WUBlastX LINE_RTE-X 165020 165262 116 + . . scaffold6 WUBlastX LINE_RTE-X 165234 165845 337 + . . scaffold6 WUBlastX LINE_RTE-X 166135 166860 308 + . . scaffold6 GLEAN mRNA 171359 179144 0.9974 - . ID=CGI_10022299; scaffold6 TRF Tandem_Repeat 172472 172541 122 + . . scaffold6 GLEAN promoter 179145 180144 0.9974 - . ID=CGI_10022299; scaffold6 GLEAN mRNA 180830 201940 0.384347 - . ID=CGI_10022300; scaffold6 WUBlastX LINE_L1 186872 187324 101 + . . scaffold6 WUBlastX LINE_L1-Tx1 186953 187312 189 + . . scaffold6 WUBlastX LINE_L1 187315 188343 365 + . . scaffold6 WUBlastX LINE_L1-Tx1 187609 188388 597 + . . scaffold6 WUBlastX LINE_L1-Tx1 188393 189628 134 + . . scaffold6 WUBlastX LINE_L1-Tx1 188411 189070 200 + . . scaffold6 WUBlastX LINE_L1-Tx1 189389 189721 53 + . . scaffold6 TRF Tandem_Repeat 189905 189940 72 + . . scaffold6 TRF Tandem_Repeat 194063 194113 102 + . . scaffold6 TRF Tandem_Repeat 195960 195997 53 + . . scaffold6 WUBlastX LINE_L1-Tx1 197556 197735 66 + . . scaffold6 WUBlastX LINE_L1-Tx1 197725 198762 251 + . . scaffold6 WUBlastX LINE_L1-Tx1 198409 198924 155 + . . scaffold6 WUBlastX LINE_L1-Tx1 198936 199016 32 + . . scaffold6 WUBlastX LINE_L1-Tx1 198954 199322 74 + . . scaffold6 WUBlastX LINE_L1-Tx1 199292 199483 31 + . . scaffold6 WUBlastX LINE_L1-Tx1 199415 199501 23 + . . scaffold6 WUBlastX LINE_L1-Tx1 199540 200214 148 + . . scaffold6 WUBlastX LINE_L1-Tx1 199909 200280 21 + . . scaffold6 GLEAN promoter 201941 202940 0.384347 - . ID=CGI_10022300; scaffold6 TRF Tandem_Repeat 208927 209748 1168 + . . scaffold6 TRF Tandem_Repeat 208927 209748 1168 + . . scaffold6 TRF Tandem_Repeat 213761 213812 77 + . . scaffold6 TRF Tandem_Repeat 213761 213812 77 + . . scaffold6 TRF Tandem_Repeat 213761 213812 77 + . . scaffold6 GLEAN mRNA 213947 219384 0.999944 - . ID=CGI_10022301; scaffold6 TRF Tandem_Repeat 217621 217927 436 + . . scaffold6 GLEAN promoter 219385 220384 0.999944 - . ID=CGI_10022301; scaffold6 TRF Tandem_Repeat 227278 228245 1403 + . . scaffold6 GLEAN mRNA 238177 239031 0.994741 - . ID=CGI_10022302; scaffold6 GLEAN promoter 239032 240031 0.994741 - . ID=CGI_10022302; scaffold6 WUBlastX LINE_CR1 241913 243073 874 - . . scaffold6 WUBlastX LINE_L2 242711 243142 180 - . . scaffold6 GLEAN mRNA 243521 244840 0.993546 - . ID=CGI_10022303; scaffold6 WUBlastX LINE_Jockey 243743 243850 24 - . . scaffold6 WUBlastX LINE_LOA 243911 243991 25 - . . scaffold6 WUBlastX LINE_RTE-BovB 244034 244117 23 - . . scaffold6 GLEAN promoter 244841 245840 0.993546 - . ID=CGI_10022303; scaffold6 GLEAN promoter 246100 247099 0.999677 + . ID=CGI_10022304; scaffold6 GLEAN mRNA 247100 255741 0.999677 + . ID=CGI_10022304; scaffold6 GLEAN mRNA 251992 254864 0.999998 - . ID=CGI_10022305; scaffold6 GLEAN promoter 254865 255864 0.999998 - . ID=CGI_10022305; scaffold6 GLEAN promoter 255195 256194 1 + . ID=CGI_10022306; scaffold6 GLEAN mRNA 256195 258278 1 + . ID=CGI_10022306; scaffold6 WUBlastX LINE_L1-Tx1 264656 265000 67 - . . scaffold6 WUBlastX LINE_L1-Tx1 265027 265179 27 - . . scaffold6 WUBlastX LINE_L1-Tx1 265027 265137 33 - . . scaffold6 WUBlastX LINE_L1 265347 265556 22 - . . scaffold6 WUBlastX LINE_L1 265401 265544 39 - . . scaffold6 WUBlastX LINE_L1-Tx1 265736 266452 133 - . . scaffold6 WUBlastX LINE_L1-Tx1 265766 266374 286 - . . scaffold6 WUBlastX LINE_L1-Tx1 266712 266876 60 - . . scaffold6 WUBlastX LINE_L1-Tx1 266733 266864 94 - . . scaffold6 WUBlastX LINE_L1 266875 267072 118 - . . scaffold6 WUBlastX LINE_L1 266896 267231 33 - . . scaffold6 WUBlastX LINE_L1 266917 267105 50 - . . scaffold6 TRF Tandem_Repeat 267463 267501 78 + . . scaffold6 GLEAN mRNA 269995 277134 0.999924 - . ID=CGI_10022307; scaffold6 GLEAN promoter 277135 278134 0.999924 - . ID=CGI_10022307; scaffold6 GLEAN mRNA 279754 280978 0.671751 - . ID=CGI_10022308; scaffold6 GLEAN promoter 280979 281978 0.671751 - . ID=CGI_10022308; scaffold6 GLEAN promoter 281764 282763 1 + . ID=CGI_10022309; scaffold6 GLEAN mRNA 282764 288335 1 + . ID=CGI_10022309; scaffold6 TRF Tandem_Repeat 285500 286292 1155 + . . scaffold6 GLEAN mRNA 292176 324328 0.985622 - . ID=CGI_10022310; scaffold6 TRF Tandem_Repeat 302131 302651 641 + . . scaffold6 TRF Tandem_Repeat 314556 314858 370 + . . scaffold6 GLEAN promoter 324329 325328 0.985622 - . ID=CGI_10022310; scaffold6 GLEAN mRNA 324353 335427 0.999609 - . ID=CGI_10022311; scaffold6 GLEAN promoter 325809 326808 1 + . ID=CGI_10022312; scaffold6 GLEAN mRNA 326809 331989 1 + . ID=CGI_10022312; scaffold6 TRF Tandem_Repeat 328056 328090 54 + . . scaffold6 TRF Tandem_Repeat 328068 328101 50 + . . scaffold6 TRF Tandem_Repeat 335035 335079 72 + . . scaffold6 GLEAN promoter 335428 336427 0.999609 - . ID=CGI_10022311; scaffold6 WUBlastX LINE_RTE-X 337582 338034 48 - . . scaffold6 WUBlastX LINE_RTE-X 337702 337896 58 - . . scaffold6 GLEAN promoter 339467 340466 0.996696 + . ID=CGI_10022313; scaffold6 GLEAN mRNA 340467 341426 0.996696 + . ID=CGI_10022313; scaffold6 TRF Tandem_Repeat 344358 344715 448 + . . scaffold6 GLEAN promoter 351977 352976 0.991191 + . ID=CGI_10022314; scaffold6 GLEAN mRNA 352977 356672 0.991191 + . ID=CGI_10022314; scaffold6 TRF Tandem_Repeat 357177 357832 835 + . . scaffold6 TRF Tandem_Repeat 360282 360337 112 + . . scaffold6 TRF Tandem_Repeat 360282 360337 76 + . . scaffold6 GLEAN promoter 366351 367350 1 + . ID=CGI_10022315; scaffold6 GLEAN mRNA 367351 382887 1 + . ID=CGI_10022315; scaffold6 GLEAN mRNA 370300 371997 0.972161 - . ID=CGI_10022316; scaffold6 GLEAN promoter 371998 372997 0.972161 - . ID=CGI_10022316; scaffold6 TRF Tandem_Repeat 376255 376361 196 + . . scaffold6 TRF Tandem_Repeat 381359 382269 900 + . . scaffold6 TRF Tandem_Repeat 382995 383024 51 + . . scaffold6 GLEAN mRNA 406534 409595 0.999999 - . ID=CGI_10022317; scaffold6 GLEAN promoter 409596 410595 0.999999 - . ID=CGI_10022317; scaffold6 GLEAN promoter 411708 412707 0.999676 + . ID=CGI_10022318; scaffold6 GLEAN mRNA 412708 429922 0.999676 + . ID=CGI_10022318; scaffold6 TRF Tandem_Repeat 419354 419858 659 + . . scaffold6 TRF Tandem_Repeat 419363 419858 574 + . . scaffold6 GLEAN mRNA 432828 434098 0.734543 - . ID=CGI_10022319; scaffold6 GLEAN promoter 434099 435098 0.734543 - . ID=CGI_10022319; scaffold6 TRF Tandem_Repeat 444698 444827 75 + . . scaffold6 TRF Tandem_Repeat 444726 445151 138 + . . scaffold6 TRF Tandem_Repeat 444856 445151 235 + . . scaffold6 TRF Tandem_Repeat 444856 445151 290 + . . scaffold6 TRF Tandem_Repeat 444856 445151 239 + . . scaffold6 TRF Tandem_Repeat 445185 445273 133 + . . scaffold6 TRF Tandem_Repeat 445682 445846 181 + . . scaffold6 TRF Tandem_Repeat 445940 445967 56 + . . scaffold6 WUBlastX LINE_CR1 447828 447968 20 - . . scaffold6 WUBlastX LINE_CR1 447879 447944 20 - . . scaffold6 WUBlastX LINE_CR1 447906 448511 44 - . . scaffold6 WUBlastX LINE_RTE-BovB 448212 448547 64 - . . scaffold6 WUBlastX LINE_Proto2 448266 448949 105 - . . scaffold6 WUBlastX LINE_Proto2 448266 449108 87 - . . scaffold6 WUBlastX LINE_Jockey 448278 449321 41 - . . scaffold6 WUBlastX LINE_CR1-L2 448278 448526 107 - . . scaffold6 WUBlastX LINE_L2-Hydra 448573 449796 27 - . . scaffold6 WUBlastX LINE_L2 448573 448845 112 - . . scaffold6 WUBlastX LINE_L2 449656 449931 22 - . . scaffold6 WUBlastX LINE_L2 449656 449775 27 - . . scaffold6 WUBlastX LINE_CR1 449863 449946 22 - . . scaffold6 WUBlastX LINE_RTE-X 450308 450496 55 - . . scaffold6 TRF Tandem_Repeat 451533 451865 571 + . . scaffold6 GLEAN promoter 457158 458157 0.88693 + . ID=CGI_10022320; scaffold6 GLEAN mRNA 458158 469328 0.88693 + . ID=CGI_10022320; scaffold6 GLEAN mRNA 470186 473366 0.937806 - . ID=CGI_10022321; scaffold6 GLEAN promoter 473367 474366 0.937806 - . ID=CGI_10022321; scaffold6 GLEAN promoter 483474 484473 0.662764 + . ID=CGI_10022322; scaffold6 GLEAN mRNA 484474 501929 0.662764 + . ID=CGI_10022322; scaffold6 TRF Tandem_Repeat 484712 484780 138 + . . scaffold6 TRF Tandem_Repeat 486028 487102 1296 + . . scaffold6 TRF Tandem_Repeat 486028 486518 712 + . . scaffold6 TRF Tandem_Repeat 486530 486888 531 + . . scaffold6 TRF Tandem_Repeat 493174 493762 764 + . . scaffold6 TRF Tandem_Repeat 495132 495203 112 + . . scaffold6 TRF Tandem_Repeat 497500 497530 62 + . . scaffold6 GLEAN mRNA 502989 512635 0.738188 - . ID=CGI_10022323; scaffold6 TRF Tandem_Repeat 503362 504320 467 + . . scaffold6 TRF Tandem_Repeat 503386 503948 341 + . . scaffold6 TRF Tandem_Repeat 503962 504239 142 + . . scaffold6 TRF Tandem_Repeat 510351 511147 370 + . . scaffold6 TRF Tandem_Repeat 510365 511132 535 + . . scaffold6 TRF Tandem_Repeat 510366 510876 303 + . . scaffold6 TRF Tandem_Repeat 510672 511225 391 + . . scaffold6 TRF Tandem_Repeat 510903 511147 174 + . . scaffold6 TRF Tandem_Repeat 510960 511225 132 + . . scaffold6 GLEAN promoter 512636 513635 0.738188 - . ID=CGI_10022323; scaffold6 WUBlastX LINE_RTE-X 513620 513793 79 - . . scaffold6 WUBlastX LINE_RTE-X 513626 513829 64 - . . scaffold6 WUBlastX LINE_RTE-X 513626 513886 29 - . . scaffold6 WUBlastX LINE_RTE-X 513795 514004 23 - . . scaffold6 WUBlastX LINE_RTE-X 514084 514434 227 - . . scaffold6 WUBlastX LINE_CR1 514168 514509 56 - . . scaffold6 WUBlastX LINE_RTE-X 514470 514607 29 - . . scaffold6 WUBlastX LINE_RTE-X 514470 514643 26 - . . scaffold6 WUBlastX LINE_RTE-X 514600 514692 22 - . . scaffold6 WUBlastX LINE_RTE-X 514918 515058 28 - . . scaffold6 WUBlastX LINE_I 514945 515058 30 - . . scaffold6 WUBlastX LINE_RTE-X 514993 515058 35 - . . scaffold6 WUBlastX LINE_RTE-BovB 515048 515152 41 - . . scaffold6 WUBlastX LINE_L2 515177 515878 38 - . . scaffold6 WUBlastX LINE_RTE-X 515348 515986 203 - . . scaffold6 WUBlastX LINE_RTE-X 515953 516540 146 - . . scaffold6 WUBlastX LINE_L1 516187 516762 23 - . . scaffold6 WUBlastX LINE_RTE-X 519840 520598 143 - . . scaffold6 WUBlastX LINE_RTE-X 519966 523235 1008 - . . scaffold6 WUBlastX LINE_CR1 522630 523385 35 - . . scaffold6 WUBlastX LINE_L1 523362 523739 146 - . . scaffold6 WUBlastX LINE_Jockey 525193 525276 26 + . . scaffold6 WUBlastX LINE_Rex-Babar 525974 526393 69 + . . scaffold6 WUBlastX LINE_RTE-X 526055 526750 254 + . . scaffold6 WUBlastX LINE_RTE-X 526762 526998 111 + . . scaffold6 WUBlastX LINE_RTE-X 526765 527049 67 + . . scaffold6 GLEAN promoter 529580 530579 0.438003 + . ID=CGI_10022325; scaffold6 GLEAN mRNA 529598 546835 0.768138 - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 529851 529925 107 + . . scaffold6 TRF Tandem_Repeat 529950 530506 639 + . . scaffold6 TRF Tandem_Repeat 529950 530506 981 + . . scaffold6 TRF Tandem_Repeat 529950 530537 826 + . . scaffold6 GLEAN mRNA 530580 537084 0.438003 + . ID=CGI_10022325; scaffold6 TRF Tandem_Repeat 543173 543291 211 + . . scaffold6 TRF Tandem_Repeat 543428 543499 117 + . . scaffold6 GLEAN promoter 546836 547835 0.768138 - . ID=CGI_10022324; scaffold6 TRF Tandem_Repeat 546859 546967 92 + . . scaffold6 TRF Tandem_Repeat 547000 547029 60 + . . scaffold6 GLEAN mRNA 547866 568614 0.78576 - . ID=CGI_10022326; scaffold6 GLEAN promoter 568615 569614 0.78576 - . ID=CGI_10022326; scaffold6 GLEAN mRNA 581382 584279 0.298144 - . ID=CGI_10022327; scaffold6 TRF Tandem_Repeat 582182 582228 55 + . . scaffold6 TRF Tandem_Repeat 582475 582654 100 + . . scaffold6 TRF Tandem_Repeat 582503 582690 156 + . . scaffold6 GLEAN promoter 584280 585279 0.298144 - . ID=CGI_10022327; scaffold6 GLEAN promoter 589463 590462 0.999995 + . ID=CGI_10022328; scaffold6 GLEAN mRNA 590463 591941 0.999995 + . ID=CGI_10022328; scaffold6 TRF Tandem_Repeat 595691 596532 1346 + . . scaffold6 TRF Tandem_Repeat 599261 599292 55 + . . scaffold6 TRF Tandem_Repeat 600955 600989 52 + . . scaffold6 TRF Tandem_Repeat 601821 601892 126 + . . scaffold6 GLEAN mRNA 604472 612930 0.854712 - . ID=CGI_10022329; scaffold6 TRF Tandem_Repeat 605111 606113 1555 + . . scaffold6 TRF Tandem_Repeat 610558 610582 50 + . . scaffold6 WUBlastX DNA_Harbinger 611426 611722 67 - . . scaffold6 WUBlastX DNA_Harbinger 611426 611563 89 - . . scaffold6 GLEAN promoter 612931 613930 0.854712 - . ID=CGI_10022329; scaffold6 GLEAN mRNA 613145 618796 0.999953 - . ID=CGI_10022330; scaffold6 TRF Tandem_Repeat 613607 613661 92 + . . scaffold6 TRF Tandem_Repeat 613610 613667 55 + . . scaffold6 TRF Tandem_Repeat 613618 613668 77 + . . scaffold6 WUBlastX DNA_Sola 613670 613783 32 - . . scaffold6 WUBlastX DNA_Sola 613721 613783 44 - . . scaffold6 WUBlastX DNA_Sola 613747 615075 614 - . . scaffold6 WUBlastX DNA_Sola 618746 619159 51 - . . scaffold6 GLEAN promoter 618797 619796 0.999953 - . ID=CGI_10022330; scaffold6 TRF Tandem_Repeat 620140 620207 64 + . . scaffold6 TRF Tandem_Repeat 620149 620208 75 + . . scaffold6 TRF Tandem_Repeat 643981 644211 288 + . . scaffold6 TRF Tandem_Repeat 645694 645748 65 + . . scaffold6 TRF Tandem_Repeat 645695 645748 56 + . . scaffold6 WUBlastX DNA_TcMar-Tc1 651473 651703 136 - . . scaffold6 WUBlastX DNA_TcMar-Tc1 651705 652496 289 - . . scaffold6 TRF Tandem_Repeat 664337 664374 67 + . . scaffold6 TRF Tandem_Repeat 667213 667438 210 + . . scaffold6 TRF Tandem_Repeat 667241 667438 333 + . . scaffold6 GLEAN promoter 668450 669449 1 + . ID=CGI_10022331; scaffold6 TRF Tandem_Repeat 668646 668701 112 + . . scaffold6 TRF Tandem_Repeat 669087 669115 58 + . . scaffold6 GLEAN mRNA 669450 677435 1 + . ID=CGI_10022331; scaffold6 WUBlastX LINE_L2 671555 672604 463 - . . scaffold6 WUBlastX LINE_L2 672558 673292 535 - . . scaffold6 WUBlastX LINE_CR1 673294 673500 72 - . . scaffold6 WUBlastX LINE_CR1-L2 673294 673617 59 - . . scaffold6 WUBlastX LINE_CR1-L2 673318 673728 54 - . . scaffold6 TRF Tandem_Repeat 678077 678127 95 + . . scaffold6 TRF Tandem_Repeat 678701 678984 117 + . . scaffold6 TRF Tandem_Repeat 678826 679004 114 + . . scaffold6 GLEAN promoter 683420 684419 0.811719 + . ID=CGI_10022332; scaffold6 GLEAN mRNA 684420 688461 0.811719 + . ID=CGI_10022332; scaffold6 TRF Tandem_Repeat 689940 690189 301 + . . scaffold6 GLEAN promoter 693464 694463 0.235103 + . ID=CGI_10022333; scaffold6 GLEAN mRNA 694464 700813 0.235103 + . ID=CGI_10022333; scaffold6 TRF Tandem_Repeat 695516 695546 62 + . . scaffold6 TRF Tandem_Repeat 697692 697757 123 + . . scaffold6 GLEAN promoter 700995 701994 0.270237 + . ID=CGI_10022334; scaffold6 GLEAN mRNA 701995 741494 0.270237 + . ID=CGI_10022334; scaffold6 WUBlastX DNA_Harbinger 701998 702150 51 + . . scaffold6 TRF Tandem_Repeat 703263 703299 74 + . . scaffold6 TRF Tandem_Repeat 703328 703391 119 + . . scaffold6 WUBlastX DNA_Harbinger 703407 703607 78 + . . scaffold6 TRF Tandem_Repeat 706691 706756 116 + . . scaffold6 TRF Tandem_Repeat 706692 706753 72 + . . scaffold6 WUBlastX DNA_IS4EU 714695 714838 51 - . . scaffold6 WUBlastX DNA_IS4EU 714849 714950 58 - . . scaffold6 WUBlastX DNA_hAT-Tip100 720757 721296 43 + . . scaffold6 WUBlastX DNA_hAT-Tip100 721132 722031 282 + . . scaffold6 WUBlastX DNA_hAT-Tip100 722186 722314 57 + . . scaffold6 WUBlastX DNA_hAT 723394 723519 58 + . . scaffold6 WUBlastX DNA_hAT-Tip100 723627 723869 67 + . . scaffold6 WUBlastX DNA_hAT-Tip100 723687 723902 67 + . . scaffold6 TRF Tandem_Repeat 728937 728984 96 + . . scaffold6 TRF Tandem_Repeat 733727 733783 114 + . . scaffold60 TRF Tandem_Repeat 1942 2010 111 + . . scaffold60 TRF Tandem_Repeat 5433 5475 86 + . . scaffold60 GLEAN promoter 7046 8045 0.904463 + . ID=CGI_10004680; scaffold60 GLEAN mRNA 8046 9203 0.904463 + . ID=CGI_10004680; scaffold60 TRF Tandem_Repeat 13174 13207 68 + . . scaffold60 GLEAN promoter 17485 18484 0.863777 + . ID=CGI_10004681; scaffold60 GLEAN mRNA 18485 36309 0.863777 + . ID=CGI_10004681; scaffold60 TRF Tandem_Repeat 33298 33355 116 + . . scaffold60 TRF Tandem_Repeat 33371 33405 52 + . . scaffold60 TRF Tandem_Repeat 34860 34899 80 + . . scaffold60 WUBlastX LINE_Penelope 42778 42918 42 - . . scaffold60 GLEAN mRNA 45615 47291 0.740606 - . ID=CGI_10004683; scaffold60 GLEAN promoter 47292 48291 0.740606 - . ID=CGI_10004683; scaffold60 TRF Tandem_Repeat 52821 52862 75 + . . scaffold60 TRF Tandem_Repeat 53100 53124 50 + . . scaffold60 TRF Tandem_Repeat 53147 53206 102 + . . scaffold60 TRF Tandem_Repeat 54566 54632 73 + . . scaffold60 TRF Tandem_Repeat 54566 54632 62 + . . scaffold60 GLEAN mRNA 63353 89167 0.999624 - . ID=CGI_10004684; scaffold60 TRF Tandem_Repeat 67136 67190 96 + . . scaffold60 GLEAN promoter 89168 90167 0.999624 - . ID=CGI_10004684; scaffold60 GLEAN promoter 91012 92011 0.507311 + . ID=CGI_10004685; scaffold60 TRF Tandem_Repeat 91501 91570 140 + . . scaffold60 GLEAN mRNA 92012 96844 0.507311 + . ID=CGI_10004685; scaffold60 GLEAN mRNA 96932 97333 0.999661 - . ID=CGI_10004686; scaffold60 WUBlastX DNA_Academ 96941 97294 152 - . . scaffold60 WUBlastX DNA_Academ 97010 97387 169 - . . scaffold60 GLEAN promoter 97334 98333 0.999661 - . ID=CGI_10004686; scaffold60 WUBlastX DNA_Academ 97527 97793 44 - . . scaffold60 WUBlastX DNA_Academ 98620 98727 34 - . . scaffold60 WUBlastX DNA_Academ 98687 98941 89 - . . scaffold60 WUBlastX DNA_Academ 100039 100572 180 + . . scaffold60 WUBlastX DNA_Academ 100758 101000 92 + . . scaffold60 GLEAN promoter 103669 104668 0.939408 + . ID=CGI_10004687; scaffold60 GLEAN mRNA 104669 108167 0.939408 + . ID=CGI_10004687; scaffold600 GLEAN mRNA 9807 13868 0.999662 - . ID=CGI_10001051; scaffold600 GLEAN promoter 13869 14038 0.999662 - . ID=CGI_10001051; scaffold601 GLEAN mRNA 530 26992 0.78898 - . ID=CGI_10026801; scaffold601 TRF Tandem_Repeat 23742 23986 259 + . . scaffold601 GLEAN promoter 26993 27992 0.78898 - . ID=CGI_10026801; scaffold601 GLEAN promoter 27184 28183 0.973429 + . ID=CGI_10026802; scaffold601 GLEAN mRNA 28184 37166 0.973429 + . ID=CGI_10026802; scaffold601 TRF Tandem_Repeat 41954 42071 186 + . . scaffold601 TRF Tandem_Repeat 41954 42059 108 + . . scaffold601 TRF Tandem_Repeat 41994 42071 56 + . . scaffold601 TRF Tandem_Repeat 49874 49927 108 + . . scaffold601 TRF Tandem_Repeat 53260 53304 90 + . . scaffold601 TRF Tandem_Repeat 64673 64706 59 + . . scaffold601 TRF Tandem_Repeat 69848 69898 102 + . . scaffold601 TRF Tandem_Repeat 75186 75241 112 + . . scaffold601 GLEAN promoter 81036 82035 0.999676 + . ID=CGI_10026803; scaffold601 GLEAN mRNA 82036 83215 0.999676 + . ID=CGI_10026803; scaffold601 TRF Tandem_Repeat 86280 86315 54 + . . scaffold601 TRF Tandem_Repeat 86792 87006 254 + . . scaffold601 GLEAN promoter 88912 89911 0.754731 + . ID=CGI_10026804; scaffold601 GLEAN mRNA 89912 90730 0.754731 + . ID=CGI_10026804; scaffold601 TRF Tandem_Repeat 92239 92953 1205 + . . scaffold601 TRF Tandem_Repeat 92946 93005 72 + . . scaffold601 TRF Tandem_Repeat 93482 93661 100 + . . scaffold601 TRF Tandem_Repeat 93488 93662 163 + . . scaffold601 TRF Tandem_Repeat 93658 93820 235 + . . scaffold601 TRF Tandem_Repeat 110102 110963 699 + . . scaffold601 TRF Tandem_Repeat 117717 117747 62 + . . scaffold601 TRF Tandem_Repeat 117745 117812 136 + . . scaffold601 TRF Tandem_Repeat 117941 117994 108 + . . scaffold601 GLEAN mRNA 118111 119100 0.999857 - . ID=CGI_10026805; scaffold601 GLEAN promoter 119101 120100 0.999857 - . ID=CGI_10026805; scaffold601 TRF Tandem_Repeat 119813 119893 83 + . . scaffold601 TRF Tandem_Repeat 119829 119885 66 + . . scaffold601 TRF Tandem_Repeat 119829 119885 75 + . . scaffold601 TRF Tandem_Repeat 119833 119878 56 + . . scaffold601 TRF Tandem_Repeat 121185 121217 66 + . . scaffold601 TRF Tandem_Repeat 121826 122642 603 + . . scaffold601 TRF Tandem_Repeat 121836 122764 596 + . . scaffold601 GLEAN mRNA 128057 130315 1 - . ID=CGI_10026806; scaffold601 TRF Tandem_Repeat 129466 129532 91 + . . scaffold601 TRF Tandem_Repeat 129568 129619 95 + . . scaffold601 GLEAN promoter 130316 131315 1 - . ID=CGI_10026806; scaffold601 TRF Tandem_Repeat 131579 134528 2413 + . . scaffold601 TRF Tandem_Repeat 137796 137843 96 + . . scaffold601 TRF Tandem_Repeat 137798 137858 59 + . . scaffold601 WUBlastX LTR_Ngaro 137922 138119 73 + . . scaffold601 WUBlastX LTR_Ngaro 138506 138616 22 + . . scaffold601 WUBlastX LTR_Ngaro 138524 138610 24 + . . scaffold601 WUBlastX LTR_Ngaro 138684 138956 59 + . . scaffold601 WUBlastX LTR_Ngaro 138995 139228 36 + . . scaffold601 WUBlastX LTR_Ngaro 139040 139234 49 + . . scaffold601 TRF Tandem_Repeat 140045 140120 62 + . . scaffold601 TRF Tandem_Repeat 140046 140116 72 + . . scaffold601 TRF Tandem_Repeat 140942 141027 100 + . . scaffold601 TRF Tandem_Repeat 141096 141286 166 + . . scaffold601 TRF Tandem_Repeat 141096 141286 206 + . . scaffold601 GLEAN mRNA 149587 157978 0.998571 - . ID=CGI_10026807; scaffold601 GLEAN promoter 157979 158978 0.998571 - . ID=CGI_10026807; scaffold601 GLEAN mRNA 158109 167049 0.992377 - . ID=CGI_10026808; scaffold601 GLEAN promoter 166599 167598 1 + . ID=CGI_10026809; scaffold601 GLEAN promoter 167050 168049 0.992377 - . ID=CGI_10026808; scaffold601 GLEAN mRNA 167599 174491 1 + . ID=CGI_10026809; scaffold601 GLEAN mRNA 178454 186373 0.999648 - . ID=CGI_10026810; scaffold601 TRF Tandem_Repeat 182117 182402 446 + . . scaffold601 GLEAN promoter 186374 187373 0.999648 - . ID=CGI_10026810; scaffold601 WUBlastX LINE_RTE-X 194733 195116 47 - . . scaffold601 WUBlastX LINE_RTE-X 194817 195155 71 - . . scaffold601 WUBlastX LINE_RTE-X 194889 195149 126 - . . scaffold601 TRF Tandem_Repeat 195178 195430 275 + . . scaffold601 TRF Tandem_Repeat 195179 195439 312 + . . scaffold601 TRF Tandem_Repeat 196066 196348 435 + . . scaffold601 TRF Tandem_Repeat 196074 196371 370 + . . scaffold601 TRF Tandem_Repeat 196074 196347 213 + . . scaffold601 WUBlastX LINE_RTE-X 196372 197175 376 - . . scaffold601 WUBlastX LINE_L2 196426 197490 84 - . . scaffold601 GLEAN promoter 204574 205573 0.80682 + . ID=CGI_10026811; scaffold601 GLEAN mRNA 205574 214448 0.80682 + . ID=CGI_10026811; scaffold601 GLEAN mRNA 218127 237635 0.999619 - . ID=CGI_10026812; scaffold601 TRF Tandem_Repeat 231836 232998 648 + . . scaffold601 TRF Tandem_Repeat 231836 232925 419 + . . scaffold601 TRF Tandem_Repeat 231847 232967 582 + . . scaffold601 TRF Tandem_Repeat 234634 235095 609 + . . scaffold601 GLEAN promoter 237636 238635 0.999619 - . ID=CGI_10026812; scaffold601 GLEAN promoter 242247 243246 0.998597 + . ID=CGI_10026813; scaffold601 GLEAN mRNA 243247 246558 0.998597 + . ID=CGI_10026813; scaffold601 GLEAN mRNA 247861 251658 0.999376 - . ID=CGI_10026814; scaffold601 GLEAN promoter 251659 252658 0.999376 - . ID=CGI_10026814; scaffold601 TRF Tandem_Repeat 252416 252502 70 + . . scaffold601 TRF Tandem_Repeat 252580 252817 203 + . . scaffold601 TRF Tandem_Repeat 253017 253112 68 + . . scaffold601 TRF Tandem_Repeat 253203 253305 109 + . . scaffold601 GLEAN mRNA 255965 257302 1 - . ID=CGI_10026815; scaffold601 GLEAN promoter 257303 258302 1 - . ID=CGI_10026815; scaffold601 TRF Tandem_Repeat 257766 257815 100 + . . scaffold601 GLEAN promoter 258394 259393 0.999372 + . ID=CGI_10026816; scaffold601 GLEAN mRNA 259394 259615 0.999372 + . ID=CGI_10026816; scaffold601 TRF Tandem_Repeat 260306 260336 62 + . . scaffold601 GLEAN promoter 261723 262722 0.992653 + . ID=CGI_10026817; scaffold601 GLEAN mRNA 262723 263422 0.992653 + . ID=CGI_10026817; scaffold601 TRF Tandem_Repeat 265612 265716 76 + . . scaffold601 TRF Tandem_Repeat 266788 266892 112 + . . scaffold601 GLEAN mRNA 274688 294497 0.593771 - . ID=CGI_10026818; scaffold601 TRF Tandem_Repeat 281188 281307 231 + . . scaffold601 GLEAN promoter 283540 284539 0.930355 + . ID=CGI_10026819; scaffold601 GLEAN mRNA 284540 292817 0.930355 + . ID=CGI_10026819; scaffold601 GLEAN promoter 294498 295497 0.593771 - . ID=CGI_10026818; scaffold601 GLEAN mRNA 295422 296879 0.593215 - . ID=CGI_10026820; scaffold601 GLEAN promoter 296880 297879 0.593215 - . ID=CGI_10026820; scaffold601 GLEAN promoter 297645 298644 0.999414 + . ID=CGI_10026821; scaffold601 GLEAN mRNA 298645 334195 0.999414 + . ID=CGI_10026821; scaffold601 TRF Tandem_Repeat 301749 301809 122 + . . scaffold601 TRF Tandem_Repeat 312977 313327 431 + . . scaffold601 TRF Tandem_Repeat 316605 316775 288 + . . scaffold601 TRF Tandem_Repeat 319250 319684 490 + . . scaffold601 TRF Tandem_Repeat 322502 322648 204 + . . scaffold601 TRF Tandem_Repeat 322670 323360 1301 + . . scaffold601 TRF Tandem_Repeat 324256 324347 89 + . . scaffold601 TRF Tandem_Repeat 327007 327043 74 + . . scaffold601 TRF Tandem_Repeat 332422 332913 867 + . . scaffold601 WUBlastX DNA_Harbinger 343956 344465 168 - . . scaffold601 WUBlastX DNA_Harbinger 344178 344462 205 - . . scaffold601 WUBlastX DNA_Harbinger 344480 345067 315 - . . scaffold601 TRF Tandem_Repeat 354418 354564 64 + . . scaffold601 GLEAN promoter 356849 357848 0.543194 + . ID=CGI_10026822; scaffold601 TRF Tandem_Repeat 356988 357024 74 + . . scaffold601 TRF Tandem_Repeat 357126 357214 126 + . . scaffold601 GLEAN mRNA 357849 378829 0.543194 + . ID=CGI_10026822; scaffold601 TRF Tandem_Repeat 372152 372191 55 + . . scaffold601 WUBlastX LINE_L2 374497 374562 20 + . . scaffold601 WUBlastX LINE_L1-Tx1 374856 377222 1398 + . . scaffold601 WUBlastX LINE_L1-Tx1 377228 378025 191 + . . scaffold601 TRF Tandem_Repeat 383952 384002 72 + . . scaffold601 TRF Tandem_Repeat 403168 403221 108 + . . scaffold601 TRF Tandem_Repeat 413394 413574 152 + . . scaffold601 TRF Tandem_Repeat 413430 413619 116 + . . scaffold601 TRF Tandem_Repeat 413470 413619 103 + . . scaffold601 GLEAN mRNA 413960 421060 0.593771 - . ID=CGI_10026823; scaffold601 GLEAN promoter 421061 422060 0.593771 - . ID=CGI_10026823; scaffold601 TRF Tandem_Repeat 422121 422642 407 + . . scaffold601 TRF Tandem_Repeat 423344 423385 75 + . . scaffold601 TRF Tandem_Repeat 430626 430744 89 + . . scaffold601 GLEAN mRNA 435556 435771 0.999372 - . ID=CGI_10026824; scaffold601 GLEAN promoter 435772 436771 0.999372 - . ID=CGI_10026824; scaffold601 GLEAN mRNA 435777 436136 0.733493 - . ID=CGI_10026825; scaffold601 GLEAN promoter 436137 437136 0.733493 - . ID=CGI_10026825; scaffold601 WUBlastX LTR_Pao 436249 436434 66 - . . scaffold601 WUBlastX DNA_NOF 436348 436494 46 - . . scaffold601 WUBlastX LTR_Gypsy 436468 436680 23 - . . scaffold601 WUBlastX LTR_Gypsy 436538 437068 89 - . . scaffold601 WUBlastX LTR_Gypsy-Cigr 436658 437053 158 - . . scaffold601 WUBlastX LTR_Gypsy 437062 437727 79 - . . scaffold601 WUBlastX LTR_Gypsy-Cigr 437062 437433 229 - . . scaffold601 WUBlastX LTR_Gypsy 437062 437553 130 - . . scaffold601 WUBlastX LTR_Gypsy-Gmr1 438326 438484 77 - . . scaffold601 WUBlastX LTR_Gypsy 438362 438718 92 - . . scaffold601 WUBlastX LTR_Gypsy 438362 438808 79 - . . scaffold601 WUBlastX LTR_Gypsy 439016 439129 26 + . . scaffold601 WUBlastX LTR_Gypsy 439055 439375 51 + . . scaffold601 WUBlastX LTR_Gypsy 439109 441565 1675 + . . scaffold601 WUBlastX LTR_Gypsy 440261 441829 351 + . . scaffold601 WUBlastX LTR_Gypsy 443884 444150 34 + . . scaffold601 WUBlastX LTR_Gypsy 443953 444669 554 + . . scaffold601 WUBlastX LTR_Gypsy 444672 445316 379 + . . scaffold601 TRF Tandem_Repeat 449763 449858 165 + . . scaffold601 GLEAN mRNA 452626 461311 1 - . ID=CGI_10026827; scaffold601 GLEAN promoter 460417 461416 1 + . ID=CGI_10026828; scaffold601 GLEAN promoter 461312 462311 1 - . ID=CGI_10026827; scaffold601 GLEAN mRNA 461417 471673 1 + . ID=CGI_10026828; scaffold601 TRF Tandem_Repeat 463601 465832 3126 + . . scaffold601 TRF Tandem_Repeat 463601 465832 3258 + . . scaffold601 TRF Tandem_Repeat 463601 465832 3345 + . . scaffold601 TRF Tandem_Repeat 469578 470433 920 + . . scaffold601 GLEAN mRNA 472961 481309 0.978863 - . ID=CGI_10026829; scaffold601 GLEAN promoter 481310 482309 0.978863 - . ID=CGI_10026829; scaffold601 GLEAN promoter 482357 483356 0.678522 + . ID=CGI_10026830; scaffold601 GLEAN mRNA 483357 489501 0.678522 + . ID=CGI_10026830; scaffold601 TRF Tandem_Repeat 486564 486603 73 + . . scaffold601 WUBlastX DNA_IS4EU 488980 489462 70 + . . scaffold601 WUBlastX DNA_IS4EU 489268 489465 99 + . . scaffold601 GLEAN promoter 491971 492970 1 + . ID=CGI_10026831; scaffold601 GLEAN mRNA 492971 499692 1 + . ID=CGI_10026831; scaffold601 TRF Tandem_Repeat 494051 494140 162 + . . scaffold601 GLEAN mRNA 501188 508185 1 - . ID=CGI_10026832; scaffold601 TRF Tandem_Repeat 501717 501937 164 + . . scaffold601 TRF Tandem_Repeat 501936 502127 186 + . . scaffold601 TRF Tandem_Repeat 505318 505818 450 + . . scaffold601 TRF Tandem_Repeat 505318 505818 407 + . . scaffold601 GLEAN promoter 508186 509185 1 - . ID=CGI_10026832; scaffold601 WUBlastX DNA_IS4EU 509098 509211 29 + . . scaffold601 WUBlastX DNA_IS4EU 509213 509395 75 + . . scaffold601 TRF Tandem_Repeat 523228 523257 53 + . . scaffold601 GLEAN mRNA 525508 527430 0.995876 - . ID=CGI_10026833; scaffold601 GLEAN promoter 527431 528430 0.995876 - . ID=CGI_10026833; scaffold601 GLEAN mRNA 530091 532085 0.999999 - . ID=CGI_10026834; scaffold601 GLEAN promoter 531444 532443 0.998649 + . ID=CGI_10026835; scaffold601 GLEAN promoter 532086 533085 0.999999 - . ID=CGI_10026834; scaffold601 GLEAN mRNA 532444 548609 0.998649 + . ID=CGI_10026835; scaffold601 TRF Tandem_Repeat 537553 537597 90 + . . scaffold601 GLEAN mRNA 555610 556933 0.995871 - . ID=CGI_10026836; scaffold601 GLEAN promoter 556934 557933 0.995871 - . ID=CGI_10026836; scaffold601 TRF Tandem_Repeat 568530 570522 2799 + . . scaffold601 TRF Tandem_Repeat 571254 573107 2596 + . . scaffold601 GLEAN mRNA 573889 582293 1 - . ID=CGI_10026837; scaffold601 WUBlastX LTR_Ngaro 581346 581714 23 + . . scaffold601 WUBlastX LTR_Ngaro 581579 581770 82 + . . scaffold601 WUBlastX LTR_Ngaro 581636 581824 35 + . . scaffold601 GLEAN promoter 582294 583293 1 - . ID=CGI_10026837; scaffold601 GLEAN mRNA 586023 611758 0.912594 - . ID=CGI_10026838; scaffold601 TRF Tandem_Repeat 599508 600170 956 + . . scaffold601 TRF Tandem_Repeat 600177 600211 61 + . . scaffold601 TRF Tandem_Repeat 600181 600215 52 + . . scaffold601 WUBlastX LINE_CR1 600386 601423 181 + . . scaffold601 WUBlastX LINE_RTE-BovB 600548 602230 1551 + . . scaffold601 WUBlastX LINE_CR1 602502 602576 22 + . . scaffold601 GLEAN promoter 611759 612758 0.912594 - . ID=CGI_10026838; scaffold601 TRF Tandem_Repeat 628867 628921 92 + . . scaffold601 TRF Tandem_Repeat 637134 637165 64 + . . scaffold601 GLEAN mRNA 638383 640093 0.94906 - . ID=CGI_10026839; scaffold601 GLEAN promoter 640094 641093 0.94906 - . ID=CGI_10026839; scaffold601 GLEAN promoter 642117 643116 0.543325 + . ID=CGI_10026840; scaffold601 GLEAN mRNA 643117 654337 0.543325 + . ID=CGI_10026840; scaffold601 TRF Tandem_Repeat 648935 648966 64 + . . scaffold601 TRF Tandem_Repeat 648966 649007 84 + . . scaffold601 GLEAN mRNA 664589 668707 0.802743 - . ID=CGI_10026841; scaffold601 TRF Tandem_Repeat 666237 666290 72 + . . scaffold601 GLEAN promoter 668708 669707 0.802743 - . ID=CGI_10026841; scaffold601 WUBlastX DNA_TcMar-Tc1 672243 672536 51 + . . scaffold601 WUBlastX DNA_TcMar-Tc1 672264 672482 53 + . . scaffold601 WUBlastX DNA_TcMar-Tc1 673241 673483 28 + . . scaffold601 WUBlastX DNA_TcMar-Tc1 673304 673576 63 + . . scaffold601 WUBlastX DNA_TcMar-Tc1 673417 673980 128 + . . scaffold601 WUBlastX DNA_TcMar-Tc1 673516 673980 179 + . . scaffold601 GLEAN mRNA 675742 688623 0.796038 - . ID=CGI_10026842; scaffold601 GLEAN promoter 679495 680494 1 + . ID=CGI_10026843; scaffold601 GLEAN mRNA 680495 685734 1 + . ID=CGI_10026843; scaffold601 GLEAN promoter 686327 687326 0.965913 + . ID=CGI_10026844; scaffold601 GLEAN mRNA 687327 687917 0.965913 + . ID=CGI_10026844; scaffold601 GLEAN promoter 688624 689623 0.796038 - . ID=CGI_10026842; scaffold601 WUBlastX DNA_TcMar-Fot1 695828 695905 20 - . . scaffold601 WUBlastX DNA_TcMar-Fot1 696428 696628 74 - . . scaffold601 WUBlastX DNA_TcMar-Fot1 696494 696802 90 - . . scaffold601 TRF Tandem_Repeat 700945 700996 59 + . . scaffold601 WUBlastX DNA_Kolobok-IS4 705660 705842 32 + . . scaffold601 WUBlastX DNA_Kolobok-IS4 705868 706050 41 + . . scaffold601 GLEAN promoter 708453 709452 0.999323 + . ID=CGI_10026845; scaffold601 GLEAN mRNA 709453 722116 0.999323 + . ID=CGI_10026845; scaffold601 GLEAN mRNA 718257 728372 0.941936 - . ID=CGI_10026846; scaffold601 GLEAN promoter 728373 729372 0.941936 - . ID=CGI_10026846; scaffold601 TRF Tandem_Repeat 744016 744114 141 + . . scaffold601 TRF Tandem_Repeat 752102 752185 91 + . . scaffold601 TRF Tandem_Repeat 752106 752185 87 + . . scaffold601 TRF Tandem_Repeat 753750 753878 116 + . . scaffold601 TRF Tandem_Repeat 755954 756004 75 + . . scaffold601 TRF Tandem_Repeat 768973 768999 54 + . . scaffold601 TRF Tandem_Repeat 774998 775461 287 + . . scaffold601 TRF Tandem_Repeat 775016 775549 472 + . . scaffold601 TRF Tandem_Repeat 775027 775549 434 + . . scaffold601 WUBlastX LINE_RTE-X 777076 777222 22 - . . scaffold601 WUBlastX LINE_RTE-X 777230 777769 152 - . . scaffold601 WUBlastX LINE_RTE-X 777326 777769 186 - . . scaffold601 WUBlastX LINE_L1-Tx1 778324 779403 72 - . . scaffold601 WUBlastX LINE_L1 778984 779400 86 - . . scaffold601 WUBlastX LINE_L1 779011 779478 37 - . . scaffold601 WUBlastX LINE_L1-Tx1 779071 779613 28 - . . scaffold601 GLEAN promoter 779082 780081 0.998799 + . ID=CGI_10026847; scaffold601 GLEAN promoter 779564 780563 0.999953 + . ID=CGI_10026848; scaffold601 GLEAN mRNA 780082 780552 0.998799 + . ID=CGI_10026847; scaffold601 GLEAN mRNA 780564 781124 0.999953 + . ID=CGI_10026848; scaffold601 TRF Tandem_Repeat 791684 791723 71 + . . scaffold601 TRF Tandem_Repeat 805005 807122 2092 + . . scaffold601 TRF Tandem_Repeat 807132 807610 367 + . . scaffold601 GLEAN promoter 813190 814189 0.512568 + . ID=CGI_10026849; scaffold601 GLEAN mRNA 814190 834629 0.512568 + . ID=CGI_10026849; scaffold601 TRF Tandem_Repeat 825986 829876 3894 + . . scaffold601 WUBlastX LINE_RTE-X 833987 834397 23 + . . scaffold601 WUBlastX LINE_RTE-X 834064 834705 47 + . . scaffold601 WUBlastX LINE_RTE-X 834209 834331 67 + . . scaffold601 WUBlastX LINE_RTE-X 834319 834705 77 + . . scaffold601 WUBlastX LINE_RTE-X 834723 835211 53 + . . scaffold601 WUBlastX LINE_RTE-X 834807 835334 40 + . . scaffold601 TRF Tandem_Repeat 838206 838250 81 + . . scaffold601 TRF Tandem_Repeat 839853 839916 110 + . . scaffold601 TRF Tandem_Repeat 842243 842295 61 + . . scaffold601 TRF Tandem_Repeat 844629 844668 80 + . . scaffold601 TRF Tandem_Repeat 845728 845764 74 + . . scaffold601 TRF Tandem_Repeat 846366 846456 82 + . . scaffold601 TRF Tandem_Repeat 846442 846502 50 + . . scaffold601 WUBlastX LTR_Gypsy 846509 848443 1671 - . . scaffold601 WUBlastX LTR_Gypsy 848423 848455 20 - . . scaffold601 GLEAN promoter 850147 851146 1 + . ID=CGI_10026850; scaffold601 TRF Tandem_Repeat 850151 850185 70 + . . scaffold601 WUBlastX DNA_IS4EU 850232 850360 47 + . . scaffold601 WUBlastX DNA_IS4EU 850489 850674 22 + . . scaffold601 WUBlastX DNA_IS4EU 850820 850987 35 + . . scaffold601 WUBlastX DNA_IS4EU 850889 850960 41 + . . scaffold601 WUBlastX DNA_IS4EU 850907 851032 20 + . . scaffold601 GLEAN mRNA 851147 851398 1 + . ID=CGI_10026850; scaffold601 WUBlastX DNA_IS4EU 851183 851494 36 + . . scaffold601 WUBlastX DNA_IS4EU 851189 851383 76 + . . scaffold601 WUBlastX DNA_IS4EU 851892 852608 191 - . . scaffold601 TRF Tandem_Repeat 858754 858793 53 + . . scaffold601 WUBlastX LTR_Gypsy 858907 858969 22 + . . scaffold601 WUBlastX LTR_DIRS 859721 860167 154 + . . scaffold601 WUBlastX LTR_DIRS 859790 860167 161 + . . scaffold601 WUBlastX LTR_DIRS 860164 860262 67 + . . scaffold601 WUBlastX LTR_DIRS 860268 861368 370 + . . scaffold601 WUBlastX LTR_DIRS 861050 861625 134 + . . scaffold601 WUBlastX LTR_DIRS 861703 862656 90 + . . scaffold601 WUBlastX LTR_DIRS 862141 862623 146 + . . scaffold601 GLEAN promoter 870081 871080 0.999661 + . ID=CGI_10026851; scaffold601 GLEAN mRNA 871081 872484 0.999661 + . ID=CGI_10026851; scaffold601 TRF Tandem_Repeat 873928 873972 90 + . . scaffold601 TRF Tandem_Repeat 881718 881748 62 + . . scaffold601 TRF Tandem_Repeat 882265 882305 82 + . . scaffold601 GLEAN mRNA 888551 922212 0.651123 - . ID=CGI_10026852; scaffold601 TRF Tandem_Repeat 889997 890672 911 + . . scaffold601 TRF Tandem_Repeat 898244 899164 1283 + . . scaffold601 TRF Tandem_Repeat 899369 899406 58 + . . scaffold601 TRF Tandem_Repeat 901227 901279 106 + . . scaffold601 TRF Tandem_Repeat 902795 902820 52 + . . scaffold601 TRF Tandem_Repeat 910852 910890 78 + . . scaffold601 TRF Tandem_Repeat 917079 918038 1451 + . . scaffold601 TRF Tandem_Repeat 918062 918107 56 + . . scaffold601 TRF Tandem_Repeat 918069 918120 59 + . . scaffold601 GLEAN promoter 922213 923212 0.651123 - . ID=CGI_10026852; scaffold601 WUBlastX LTR_Copia 929920 930447 289 - . . scaffold601 WUBlastX LINE_Penelope 936153 936533 128 - . . scaffold601 WUBlastX LINE_Penelope 936201 936830 104 - . . scaffold601 GLEAN mRNA 938358 939750 1 - . ID=CGI_10026853; scaffold601 GLEAN promoter 939751 940750 1 - . ID=CGI_10026853; scaffold601 TRF Tandem_Repeat 942957 943015 100 + . . scaffold601 TRF Tandem_Repeat 943115 943164 100 + . . scaffold601 WUBlastX LINE_RTE-X 945013 945729 116 - . . scaffold601 WUBlastX LINE_I 945991 946215 24 - . . scaffold601 WUBlastX LINE_RTE-X 946963 947301 23 - . . scaffold601 WUBlastX LINE_RTE-X 947083 947340 51 - . . scaffold601 WUBlastX LINE_RTE-X 947185 947301 66 - . . scaffold601 WUBlastX LINE_L2 947219 947719 86 - . . scaffold601 WUBlastX LINE_RTE-X 947300 947689 175 - . . scaffold601 WUBlastX LINE_L2 947378 947926 36 - . . scaffold601 TRF Tandem_Repeat 951567 951624 107 + . . scaffold601 TRF Tandem_Repeat 953197 953319 108 + . . scaffold601 TRF Tandem_Repeat 963135 963449 391 + . . scaffold601 TRF Tandem_Repeat 963139 963449 442 + . . scaffold601 TRF Tandem_Repeat 964236 964296 77 + . . scaffold601 TRF Tandem_Repeat 964551 964603 106 + . . scaffold601 TRF Tandem_Repeat 964933 964980 96 + . . scaffold601 TRF Tandem_Repeat 996169 996209 82 + . . scaffold601 TRF Tandem_Repeat 999763 999810 96 + . . scaffold601 TRF Tandem_Repeat 999810 999858 80 + . . scaffold601 GLEAN promoter 1002453 1003452 0.999675 + . ID=CGI_10026854; scaffold601 GLEAN mRNA 1003453 1020892 0.999675 + . ID=CGI_10026854; scaffold601 TRF Tandem_Repeat 1011331 1011355 50 + . . scaffold601 TRF Tandem_Repeat 1012398 1012482 143 + . . scaffold601 GLEAN promoter 1024076 1025075 1 + . ID=CGI_10026855; scaffold601 GLEAN mRNA 1025076 1032475 1 + . ID=CGI_10026855; scaffold601 TRF Tandem_Repeat 1040371 1040431 122 + . . scaffold601 WUBlastX LINE_L1-Tx1 1042999 1043502 83 - . . scaffold601 WUBlastX LINE_L1-Tx1 1043086 1043502 178 - . . scaffold601 WUBlastX LINE_L1 1043320 1043547 26 - . . scaffold601 WUBlastX LINE_L1-Tx1 1043567 1044094 234 - . . scaffold601 WUBlastX LINE_L1 1045445 1045624 54 + . . scaffold601 WUBlastX LINE_L1 1045630 1045845 61 + . . scaffold601 WUBlastX LINE_L1 1045669 1045854 67 + . . scaffold601 TRF Tandem_Repeat 1048936 1048982 94 + . . scaffold601 GLEAN promoter 1049687 1050686 0.821345 + . ID=CGI_10026856; scaffold601 GLEAN mRNA 1050687 1065431 0.821345 + . ID=CGI_10026856; scaffold601 TRF Tandem_Repeat 1055636 1055704 113 + . . scaffold601 TRF Tandem_Repeat 1066053 1066085 66 + . . scaffold601 WUBlastX DNA_TcMar-Marin 1072652 1073017 107 + . . scaffold601 WUBlastX DNA_TcMar-Marin 1073034 1073150 29 + . . scaffold601 TRF Tandem_Repeat 1077088 1077126 78 + . . scaffold601 TRF Tandem_Repeat 1081565 1081647 166 + . . scaffold601 WUBlastX LINE_CR1 1084691 1085428 223 + . . scaffold601 WUBlastX LINE_CR1 1085413 1085628 139 + . . scaffold601 WUBlastX LINE_CR1 1085413 1085751 126 + . . scaffold601 WUBlastX LINE_CR1 1085727 1085909 42 + . . scaffold601 WUBlastX LINE_CR1 1085787 1085909 45 + . . scaffold601 WUBlastX LINE_CR1 1085826 1085909 56 + . . scaffold601 WUBlastX LINE_CR1-L2 1085835 1085936 51 + . . scaffold601 GLEAN mRNA 1086803 1092122 0.999824 - . ID=CGI_10026857; scaffold601 GLEAN promoter 1092123 1093122 0.999824 - . ID=CGI_10026857; scaffold601 GLEAN promoter 1098885 1099884 0.780387 + . ID=CGI_10026858; scaffold601 GLEAN mRNA 1099885 1117707 0.780387 + . ID=CGI_10026858; scaffold601 TRF Tandem_Repeat 1100045 1100165 111 + . . scaffold601 TRF Tandem_Repeat 1101008 1101113 131 + . . scaffold601 TRF Tandem_Repeat 1101017 1101113 185 + . . scaffold601 TRF Tandem_Repeat 1107819 1108386 1100 + . . scaffold601 TRF Tandem_Repeat 1108702 1109516 1477 + . . scaffold601 TRF Tandem_Repeat 1123483 1123521 69 + . . scaffold601 TRF Tandem_Repeat 1123835 1123876 84 + . . scaffold601 WUBlastX LINE_Penelope 1128003 1128176 76 + . . scaffold601 WUBlastX LTR_Gypsy 1140096 1140539 242 - . . scaffold601 WUBlastX LTR_Gypsy 1140180 1140539 259 - . . scaffold601 WUBlastX LTR_Gypsy 1140538 1140699 165 - . . scaffold601 WUBlastX LTR_Gypsy 1140538 1140777 52 - . . scaffold601 WUBlastX LINE_CR1-L2 1140900 1140980 43 - . . scaffold601 WUBlastX LINE_L2 1141045 1141575 282 - . . scaffold601 WUBlastX LTR_Gypsy 1141571 1141933 147 - . . scaffold601 WUBlastX LTR_Gypsy-Cigr 1141713 1142846 221 - . . scaffold601 WUBlastX LTR_Gypsy 1142364 1143059 253 - . . scaffold601 WUBlastX LTR_Gypsy 1142445 1142816 263 - . . scaffold601 WUBlastX LTR_Gypsy 1142535 1142858 274 - . . scaffold601 WUBlastX LTR_Gypsy 1142795 1143109 163 - . . scaffold601 WUBlastX LTR_ERV1 1142798 1143268 97 - . . scaffold601 WUBlastX LTR_Gypsy 1143293 1143637 52 - . . scaffold601 WUBlastX LTR_Gypsy 1143404 1143637 82 - . . scaffold601 WUBlastX LTR_Gypsy 1143470 1143685 106 - . . scaffold601 WUBlastX LTR_Gypsy 1143568 1143972 203 - . . scaffold601 WUBlastX LTR_Gypsy 1143631 1144056 346 - . . scaffold601 WUBlastX LTR_Gypsy 1143631 1144176 325 - . . scaffold601 WUBlastX LINE_RTE-BovB 1144084 1145004 309 - . . scaffold601 WUBlastX LTR_Gypsy 1145023 1145073 27 - . . scaffold601 WUBlastX LINE_RTE 1145343 1145648 56 - . . scaffold601 WUBlastX LINE_RTE-BovB 1145394 1145786 198 - . . scaffold601 WUBlastX LINE_RTE-BovB 1145515 1146750 162 - . . scaffold601 WUBlastX LINE_RTE-BovB 1145830 1146489 265 - . . scaffold601 WUBlastX LTR_Gypsy 1146803 1147045 90 - . . scaffold601 WUBlastX LTR_Gypsy 1147045 1147185 69 - . . scaffold601 WUBlastX LTR_Gypsy 1147078 1147206 44 - . . scaffold601 GLEAN mRNA 1147404 1147721 0.999451 - . ID=CGI_10026859; scaffold601 WUBlastX LTR_Gypsy 1147584 1148009 48 - . . scaffold601 WUBlastX LTR_Gypsy 1147683 1147958 71 - . . scaffold601 GLEAN promoter 1147722 1148721 0.999451 - . ID=CGI_10026859; scaffold601 TRF Tandem_Repeat 1158339 1158388 91 + . . scaffold601 TRF Tandem_Repeat 1159015 1159064 66 + . . scaffold601 TRF Tandem_Repeat 1159448 1159501 108 + . . scaffold601 TRF Tandem_Repeat 1160952 1161005 90 + . . scaffold601 TRF Tandem_Repeat 1184764 1185144 593 + . . scaffold601 GLEAN promoter 1188785 1189784 0.998128 + . ID=CGI_10026860; scaffold601 GLEAN mRNA 1189785 1192006 0.998128 + . ID=CGI_10026860; scaffold601 TRF Tandem_Repeat 1194335 1194400 80 + . . scaffold601 TRF Tandem_Repeat 1194336 1194397 72 + . . scaffold601 TRF Tandem_Repeat 1194336 1194397 90 + . . scaffold601 TRF Tandem_Repeat 1196261 1197082 786 + . . scaffold601 TRF Tandem_Repeat 1197855 1197897 86 + . . scaffold601 TRF Tandem_Repeat 1198371 1199007 506 + . . scaffold601 TRF Tandem_Repeat 1198787 1198954 186 + . . scaffold601 WUBlastX LINE_L2 1200590 1200661 21 + . . scaffold601 WUBlastX LINE_L2 1200655 1200789 53 + . . scaffold601 WUBlastX LINE_L2 1200789 1201034 47 + . . scaffold601 GLEAN mRNA 1201024 1226827 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1203335 1203685 366 + . . scaffold601 TRF Tandem_Repeat 1203343 1203447 101 + . . scaffold601 TRF Tandem_Repeat 1203480 1203609 103 + . . scaffold601 TRF Tandem_Repeat 1203610 1203758 95 + . . scaffold601 TRF Tandem_Repeat 1204873 1204953 63 + . . scaffold601 TRF Tandem_Repeat 1209493 1209579 111 + . . scaffold601 TRF Tandem_Repeat 1209571 1210274 261 + . . scaffold601 TRF Tandem_Repeat 1209610 1209920 278 + . . scaffold601 TRF Tandem_Repeat 1209673 1211601 408 + . . scaffold601 TRF Tandem_Repeat 1209924 1211702 1359 + . . scaffold601 TRF Tandem_Repeat 1211944 1212066 60 + . . scaffold601 TRF Tandem_Repeat 1211986 1212572 274 + . . scaffold601 TRF Tandem_Repeat 1212133 1212549 536 + . . scaffold601 TRF Tandem_Repeat 1212670 1212752 67 + . . scaffold601 TRF Tandem_Repeat 1218358 1218608 461 + . . scaffold601 TRF Tandem_Repeat 1222014 1222271 462 + . . scaffold601 TRF Tandem_Repeat 1222250 1222338 178 + . . scaffold601 TRF Tandem_Repeat 1222968 1223407 745 + . . scaffold601 TRF Tandem_Repeat 1224495 1225040 580 + . . scaffold601 TRF Tandem_Repeat 1224500 1225173 444 + . . scaffold601 TRF Tandem_Repeat 1226297 1226531 344 + . . scaffold601 GLEAN promoter 1226828 1227827 0.805376 - . ID=CGI_10026861; scaffold601 TRF Tandem_Repeat 1226886 1226957 144 + . . scaffold601 TRF Tandem_Repeat 1227077 1227306 338 + . . scaffold601 TRF Tandem_Repeat 1227077 1227439 372 + . . scaffold601 TRF Tandem_Repeat 1227077 1227439 390 + . . scaffold601 TRF Tandem_Repeat 1227342 1227439 160 + . . scaffold601 TRF Tandem_Repeat 1227589 1227664 152 + . . scaffold601 GLEAN mRNA 1228306 1237789 1 - . ID=CGI_10026862; scaffold601 WUBlastX LINE_L2 1229484 1229582 22 + . . scaffold601 WUBlastX LINE_L2 1229529 1232717 1742 + . . scaffold601 TRF Tandem_Repeat 1234727 1234781 101 + . . scaffold601 GLEAN promoter 1237790 1238789 1 - . ID=CGI_10026862; scaffold601 GLEAN promoter 1238571 1239570 0.989195 + . ID=CGI_10026863; scaffold601 GLEAN mRNA 1239571 1247879 0.989195 + . ID=CGI_10026863; scaffold601 TRF Tandem_Repeat 1243593 1243634 84 + . . scaffold601 TRF Tandem_Repeat 1243693 1243724 64 + . . scaffold601 TRF Tandem_Repeat 1252891 1253003 208 + . . scaffold601 TRF Tandem_Repeat 1252905 1253003 80 + . . scaffold601 GLEAN mRNA 1253118 1258770 1 - . ID=CGI_10026864; scaffold601 TRF Tandem_Repeat 1254301 1255206 1740 + . . scaffold601 TRF Tandem_Repeat 1257496 1257712 251 + . . scaffold601 GLEAN promoter 1258771 1259770 1 - . ID=CGI_10026864; scaffold602 GLEAN promoter 1 69 0.986127 + . ID=CGI_10023169; scaffold602 GLEAN mRNA 70 2446 0.986127 + . ID=CGI_10023169; scaffold602 GLEAN promoter 10697 11696 0.99799 + . ID=CGI_10023170; scaffold602 GLEAN mRNA 11697 12947 0.99799 + . ID=CGI_10023170; scaffold602 GLEAN promoter 12092 13091 0.909253 + . ID=CGI_10023171; scaffold602 GLEAN mRNA 13092 44157 0.909253 + . ID=CGI_10023171; scaffold602 GLEAN mRNA 17914 21935 1 - . ID=CGI_10023172; scaffold602 GLEAN promoter 21936 22935 1 - . ID=CGI_10023172; scaffold602 WUBlastX LINE_RTE-X 41480 41851 159 - . . scaffold602 WUBlastX LINE_RTE-X 41600 42073 202 - . . scaffold602 TRF Tandem_Repeat 42082 42128 67 + . . scaffold602 TRF Tandem_Repeat 43144 43203 75 + . . scaffold602 TRF Tandem_Repeat 53045 53111 89 + . . scaffold602 TRF Tandem_Repeat 56220 56272 61 + . . scaffold602 WUBlastX LINE_Penelope 68153 68248 48 - . . scaffold602 WUBlastX LINE_Penelope 68221 69036 193 - . . scaffold602 WUBlastX LINE_Penelope 71012 71128 21 - . . scaffold602 WUBlastX LINE_Penelope 71095 71226 24 - . . scaffold602 WUBlastX LINE_Penelope 71259 71429 26 - . . scaffold602 WUBlastX LINE_Penelope 71474 72304 477 - . . scaffold602 WUBlastX LINE_Penelope 72294 72665 20 - . . scaffold602 WUBlastX LINE_Penelope 72378 73139 220 - . . scaffold602 WUBlastX LTR_Ngaro 79281 79610 55 + . . scaffold602 WUBlastX LTR_Ngaro 79511 79750 34 + . . scaffold602 WUBlastX LTR_Ngaro 79571 79666 55 + . . scaffold602 WUBlastX LTR_Ngaro 79859 80398 75 + . . scaffold602 WUBlastX LTR_Ngaro 80406 80615 74 + . . scaffold602 WUBlastX LTR_Gypsy 81397 82305 431 - . . scaffold602 WUBlastX LTR_Gypsy 82122 82766 294 - . . scaffold602 WUBlastX LTR_Gypsy 82493 83149 277 - . . scaffold602 WUBlastX LINE_L1-Tx1 83163 83582 62 + . . scaffold602 WUBlastX LINE_L1-Tx1 83244 83651 25 + . . scaffold602 WUBlastX LINE_L1-Tx1 83265 83585 65 + . . scaffold602 WUBlastX LTR_Gypsy 86330 87247 113 + . . scaffold602 WUBlastX LTR_Gypsy 86591 87124 161 + . . scaffold602 WUBlastX LTR_Gypsy 86600 87337 113 + . . scaffold602 WUBlastX LTR_Gypsy 87164 87475 22 + . . scaffold602 WUBlastX LTR_Gypsy 87466 87642 23 + . . scaffold602 WUBlastX LTR_Gypsy 87514 87876 109 + . . scaffold602 WUBlastX LTR_Gypsy 87583 88911 524 + . . scaffold602 WUBlastX LTR_Gypsy 88910 89551 503 + . . scaffold602 WUBlastX LTR_Gypsy 89468 90163 403 + . . scaffold602 WUBlastX LTR_Gypsy 89468 90037 532 + . . scaffold602 WUBlastX LTR_Gypsy 90013 90888 342 + . . scaffold602 WUBlastX LTR_Gypsy 90016 90714 393 + . . scaffold602 WUBlastX LTR_Gypsy 90874 90987 30 + . . scaffold602 WUBlastX LTR_Pao 90906 91022 21 - . . scaffold602 WUBlastX LTR_Pao 91367 95734 2217 - . . scaffold602 WUBlastX LTR_Pao 95659 96108 41 - . . scaffold602 WUBlastX LTR_Pao 95890 96408 34 - . . scaffold602 TRF Tandem_Repeat 98971 99152 135 + . . scaffold602 TRF Tandem_Repeat 100805 100871 71 + . . scaffold602 WUBlastX DNA_hAT-hATw 102574 103518 223 - . . scaffold602 WUBlastX DNA_hAT-hATw 102574 103338 311 - . . scaffold602 WUBlastX DNA_hAT-hATw 103608 103838 41 - . . scaffold602 GLEAN promoter 108450 109449 0.590147 + . ID=CGI_10023173; scaffold602 GLEAN mRNA 109450 110514 0.590147 + . ID=CGI_10023173; scaffold602 WUBlastX LTR_Gypsy 109546 110319 20 + . . scaffold602 GLEAN promoter 112280 113279 0.481545 + . ID=CGI_10023174; scaffold602 GLEAN mRNA 113280 119444 0.481545 + . ID=CGI_10023174; scaffold602 GLEAN mRNA 121960 130014 0.999395 - . ID=CGI_10023175; scaffold602 GLEAN promoter 130015 131014 0.999395 - . ID=CGI_10023175; scaffold602 GLEAN promoter 130357 131356 0.593329 + . ID=CGI_10023176; scaffold602 GLEAN mRNA 131357 133036 0.593329 + . ID=CGI_10023176; scaffold602 TRF Tandem_Repeat 139816 139873 82 + . . scaffold602 GLEAN mRNA 143997 147700 0.836238 - . ID=CGI_10023177; scaffold602 GLEAN promoter 147701 148700 0.836238 - . ID=CGI_10023177; scaffold602 TRF Tandem_Repeat 174222 174265 70 + . . scaffold602 TRF Tandem_Repeat 184201 184244 70 + . . scaffold602 WUBlastX LINE_L2 196155 196376 64 - . . scaffold602 TRF Tandem_Repeat 200963 201011 53 + . . scaffold602 TRF Tandem_Repeat 200964 201006 59 + . . scaffold602 GLEAN mRNA 213653 225350 0.999992 - . ID=CGI_10023178; scaffold602 TRF Tandem_Repeat 222149 222173 50 + . . scaffold602 GLEAN promoter 225351 226350 0.999992 - . ID=CGI_10023178; scaffold602 TRF Tandem_Repeat 225365 226297 856 + . . scaffold602 WUBlastX DNA_TcMar-Tc1 226666 227334 271 - . . scaffold602 WUBlastX DNA_TcMar-Tc1 227357 227707 111 - . . scaffold602 TRF Tandem_Repeat 228702 229603 812 + . . scaffold602 GLEAN mRNA 238873 252793 0.999676 - . ID=CGI_10023179; scaffold602 TRF Tandem_Repeat 245747 245785 78 + . . scaffold602 GLEAN promoter 252794 253793 0.999676 - . ID=CGI_10023179; scaffold602 GLEAN promoter 255967 256966 0.536175 + . ID=CGI_10023180; scaffold602 GLEAN mRNA 256967 260603 0.536175 + . ID=CGI_10023180; scaffold602 TRF Tandem_Repeat 257360 257396 74 + . . scaffold602 TRF Tandem_Repeat 261878 261987 202 + . . scaffold602 TRF Tandem_Repeat 266195 266476 225 + . . scaffold602 TRF Tandem_Repeat 267245 267504 349 + . . scaffold602 TRF Tandem_Repeat 268378 268451 139 + . . scaffold602 TRF Tandem_Repeat 268846 269046 258 + . . scaffold602 TRF Tandem_Repeat 268855 269042 295 + . . scaffold602 TRF Tandem_Repeat 270675 270784 55 + . . scaffold602 TRF Tandem_Repeat 272822 272854 66 + . . scaffold602 TRF Tandem_Repeat 273414 273497 91 + . . scaffold602 TRF Tandem_Repeat 273758 273785 56 + . . scaffold602 WUBlastX LINE_RTE-X 280854 281516 142 + . . scaffold602 WUBlastX LINE_RTE-X 280884 281399 143 + . . scaffold602 TRF Tandem_Repeat 281545 281604 57 + . . scaffold602 WUBlastX LINE_RTE-X 282111 283154 163 + . . scaffold602 WUBlastX LINE_RTE-X 282282 283199 285 + . . scaffold602 TRF Tandem_Repeat 284035 284086 104 + . . scaffold602 WUBlastX LINE_RTE-X 286548 286898 71 + . . scaffold602 WUBlastX LINE_RTE-X 286548 286808 76 + . . scaffold602 WUBlastX LINE_RTE-X 286638 286805 97 + . . scaffold602 TRF Tandem_Repeat 291624 291658 52 + . . scaffold602 TRF Tandem_Repeat 292606 293666 1209 + . . scaffold602 TRF Tandem_Repeat 295068 295117 75 + . . scaffold602 TRF Tandem_Repeat 295071 295116 67 + . . scaffold602 WUBlastX LINE_L1-Tx1 299219 299416 44 + . . scaffold602 GLEAN mRNA 302980 324727 0.718781 - . ID=CGI_10023181; scaffold602 TRF Tandem_Repeat 316543 317197 892 + . . scaffold602 TRF Tandem_Repeat 317204 317262 55 + . . scaffold602 TRF Tandem_Repeat 317204 317274 70 + . . scaffold602 TRF Tandem_Repeat 317204 317275 54 + . . scaffold602 TRF Tandem_Repeat 317207 317261 101 + . . scaffold602 TRF Tandem_Repeat 317211 317273 63 + . . scaffold602 GLEAN promoter 324728 325727 0.718781 - . ID=CGI_10023181; scaffold602 TRF Tandem_Repeat 328397 328493 83 + . . scaffold602 TRF Tandem_Repeat 328923 329020 108 + . . scaffold602 WUBlastX DNA_TcMar-Tc1 331374 331667 166 - . . scaffold602 GLEAN promoter 332729 333728 0.979952 + . ID=CGI_10023182; scaffold602 GLEAN mRNA 333729 370718 0.979952 + . ID=CGI_10023182; scaffold602 TRF Tandem_Repeat 338172 338270 162 + . . scaffold602 TRF Tandem_Repeat 347222 347500 356 + . . scaffold602 TRF Tandem_Repeat 352241 352404 301 + . . scaffold602 TRF Tandem_Repeat 369076 369136 122 + . . scaffold602 TRF Tandem_Repeat 369604 369646 77 + . . scaffold602 GLEAN mRNA 372960 383366 1 - . ID=CGI_10023183; scaffold602 TRF Tandem_Repeat 373669 374818 1214 + . . scaffold602 GLEAN promoter 383367 384366 1 - . ID=CGI_10023183; scaffold602 GLEAN promoter 385601 386600 0.933824 + . ID=CGI_10023184; scaffold602 GLEAN mRNA 386601 395603 0.933824 + . ID=CGI_10023184; scaffold602 GLEAN mRNA 398507 400748 0.865902 - . ID=CGI_10023185; scaffold602 GLEAN promoter 400749 401748 0.865902 - . ID=CGI_10023185; scaffold602 GLEAN promoter 402284 403283 0.88084 + . ID=CGI_10023186; scaffold602 GLEAN mRNA 403284 426665 0.88084 + . ID=CGI_10023186; scaffold602 GLEAN mRNA 413551 417208 0.937543 - . ID=CGI_10023187; scaffold602 GLEAN promoter 417209 418208 0.937543 - . ID=CGI_10023187; scaffold602 TRF Tandem_Repeat 423057 423959 1307 + . . scaffold602 TRF Tandem_Repeat 431813 433040 1032 + . . scaffold602 TRF Tandem_Repeat 431888 432387 429 + . . scaffold602 TRF Tandem_Repeat 431915 433040 847 + . . scaffold602 TRF Tandem_Repeat 432388 433040 651 + . . scaffold602 TRF Tandem_Repeat 433041 433416 352 + . . scaffold602 TRF Tandem_Repeat 433879 434076 342 + . . scaffold602 TRF Tandem_Repeat 433898 434183 156 + . . scaffold602 TRF Tandem_Repeat 434481 434656 246 + . . scaffold602 TRF Tandem_Repeat 436751 437003 190 + . . scaffold602 TRF Tandem_Repeat 436755 436855 132 + . . scaffold602 TRF Tandem_Repeat 436873 436969 101 + . . scaffold602 WUBlastX LINE_L2 437510 437767 53 - . . scaffold602 TRF Tandem_Repeat 438648 438681 68 + . . scaffold602 GLEAN promoter 439540 440539 0.521789 + . ID=CGI_10023188; scaffold602 GLEAN mRNA 440540 452203 0.521789 + . ID=CGI_10023188; scaffold602 TRF Tandem_Repeat 464282 464348 134 + . . scaffold602 TRF Tandem_Repeat 471660 471817 298 + . . scaffold602 GLEAN promoter 473326 474325 0.469151 + . ID=CGI_10023189; scaffold602 TRF Tandem_Repeat 473396 473420 50 + . . scaffold602 GLEAN mRNA 474326 481060 0.469151 + . ID=CGI_10023189; scaffold602 TRF Tandem_Repeat 475163 475223 122 + . . scaffold602 TRF Tandem_Repeat 480669 480708 53 + . . scaffold602 TRF Tandem_Repeat 481262 481428 174 + . . scaffold602 TRF Tandem_Repeat 481428 482462 1408 + . . scaffold602 GLEAN promoter 481486 482485 1 + . ID=CGI_10023190; scaffold602 GLEAN mRNA 482486 485654 1 + . ID=CGI_10023190; scaffold602 TRF Tandem_Repeat 489331 489389 118 + . . scaffold602 GLEAN mRNA 489880 502908 0.999948 - . ID=CGI_10023191; scaffold602 TRF Tandem_Repeat 491685 491968 353 + . . scaffold602 TRF Tandem_Repeat 497011 497046 72 + . . scaffold602 GLEAN promoter 497473 498472 0.987035 + . ID=CGI_10023192; scaffold602 GLEAN mRNA 498473 515253 0.987035 + . ID=CGI_10023192; scaffold602 GLEAN promoter 502909 503908 0.999948 - . ID=CGI_10023191; scaffold602 GLEAN mRNA 511124 512773 0.999999 - . ID=CGI_10023193; scaffold602 GLEAN promoter 512774 513773 0.999999 - . ID=CGI_10023193; scaffold602 GLEAN promoter 525191 526190 0.747993 + . ID=CGI_10023194; scaffold602 TRF Tandem_Repeat 526040 526089 57 + . . scaffold602 GLEAN mRNA 526191 549073 0.747993 + . ID=CGI_10023194; scaffold602 TRF Tandem_Repeat 546369 547770 2243 + . . scaffold602 GLEAN mRNA 549948 553250 0.840347 - . ID=CGI_10023195; scaffold602 GLEAN promoter 553251 554250 0.840347 - . ID=CGI_10023195; scaffold602 TRF Tandem_Repeat 559149 560241 1462 + . . scaffold602 GLEAN promoter 582910 583909 0.1397 + . ID=CGI_10023196; scaffold602 GLEAN mRNA 583910 615175 0.1397 + . ID=CGI_10023196; scaffold602 TRF Tandem_Repeat 599365 599404 80 + . . scaffold602 TRF Tandem_Repeat 600857 600921 112 + . . scaffold602 WUBlastX DNA_Harbinger 612218 612406 67 + . . scaffold602 WUBlastX DNA_Harbinger 613031 613201 78 + . . scaffold602 GLEAN mRNA 616228 617272 1 - . ID=CGI_10023197; scaffold602 WUBlastX DNA_Harbinger 616231 616449 43 - . . scaffold602 WUBlastX DNA_Harbinger 616312 616449 51 - . . scaffold602 WUBlastX DNA_Harbinger 616333 616449 60 - . . scaffold602 WUBlastX DNA_Harbinger 616528 616860 169 - . . scaffold602 WUBlastX DNA_Harbinger 616537 616797 200 - . . scaffold602 WUBlastX DNA_Harbinger 616946 617347 62 - . . scaffold602 WUBlastX DNA_Harbinger 616958 617296 162 - . . scaffold602 GLEAN promoter 617273 618272 1 - . ID=CGI_10023197; scaffold602 TRF Tandem_Repeat 618464 618499 72 + . . scaffold602 WUBlastX DNA_Harbinger 618712 618891 51 - . . scaffold602 WUBlastX LINE_L1-Tx1 643764 644567 159 + . . scaffold602 WUBlastX LINE_L1-Tx1 643878 644543 307 + . . scaffold602 TRF Tandem_Repeat 650756 650886 129 + . . scaffold602 TRF Tandem_Repeat 652389 652418 60 + . . scaffold602 TRF Tandem_Repeat 654004 654052 98 + . . scaffold602 TRF Tandem_Repeat 658070 658195 112 + . . scaffold602 TRF Tandem_Repeat 658078 658194 168 + . . scaffold602 TRF Tandem_Repeat 658416 658473 116 + . . scaffold602 TRF Tandem_Repeat 658862 658939 86 + . . scaffold602 TRF Tandem_Repeat 658868 658942 95 + . . scaffold602 TRF Tandem_Repeat 660706 661789 1390 + . . scaffold602 TRF Tandem_Repeat 662690 662825 130 + . . scaffold602 TRF Tandem_Repeat 662961 662999 51 + . . scaffold602 TRF Tandem_Repeat 662972 663027 67 + . . scaffold602 TRF Tandem_Repeat 662989 663028 71 + . . scaffold602 WUBlastX LINE_L1-Tx1 663047 663328 42 + . . scaffold602 TRF Tandem_Repeat 666583 666693 125 + . . scaffold602 TRF Tandem_Repeat 666600 666693 143 + . . scaffold602 TRF Tandem_Repeat 667320 667381 124 + . . scaffold602 TRF Tandem_Repeat 667995 668035 82 + . . scaffold602 TRF Tandem_Repeat 668663 668752 146 + . . scaffold602 WUBlastX LINE_L1 670945 671298 54 + . . scaffold602 WUBlastX LINE_L1 671256 671675 139 + . . scaffold602 WUBlastX LINE_L1 671343 671660 144 + . . scaffold602 WUBlastX LINE_RTE-X 671796 672149 53 + . . scaffold602 GLEAN mRNA 672264 686113 0.546522 - . ID=CGI_10023199; scaffold602 TRF Tandem_Repeat 674190 674225 72 + . . scaffold602 TRF Tandem_Repeat 678650 678700 102 + . . scaffold602 GLEAN promoter 686114 687113 0.546522 - . ID=CGI_10023199; scaffold602 WUBlastX DNA_TcMar-Marin 688159 688338 44 + . . scaffold602 WUBlastX DNA_TcMar-Marin 688418 688720 83 + . . scaffold602 WUBlastX DNA_TcMar-Marin 688418 688645 84 + . . scaffold602 GLEAN mRNA 697009 711747 0.999643 - . ID=CGI_10023200; scaffold602 TRF Tandem_Repeat 698048 698118 81 + . . scaffold602 TRF Tandem_Repeat 698550 699269 881 + . . scaffold602 TRF Tandem_Repeat 699146 699170 50 + . . scaffold602 TRF Tandem_Repeat 708480 708520 55 + . . scaffold602 GLEAN promoter 711748 712747 0.999643 - . ID=CGI_10023200; scaffold602 WUBlastX DNA_TcMar-Tc1 722311 722520 35 + . . scaffold602 WUBlastX DNA_TcMar-Tc1 722344 723096 116 + . . scaffold602 WUBlastX DNA_TcMar-Tc1 722845 723222 55 + . . scaffold602 WUBlastX DNA_TcMar-Tc1 723098 723262 54 + . . scaffold602 GLEAN promoter 725114 726113 1 + . ID=CGI_10023201; scaffold602 GLEAN mRNA 726114 727186 1 + . ID=CGI_10023201; scaffold602 GLEAN mRNA 727449 768707 0.637612 - . ID=CGI_10023202; scaffold602 TRF Tandem_Repeat 734341 734379 78 + . . scaffold602 TRF Tandem_Repeat 749939 750003 121 + . . scaffold602 GLEAN promoter 768708 769707 0.637612 - . ID=CGI_10023202; scaffold602 GLEAN mRNA 775001 781221 1 - . ID=CGI_10023203; scaffold602 GLEAN promoter 780902 781901 0.814164 + . ID=CGI_10023204; scaffold602 GLEAN promoter 781222 782221 1 - . ID=CGI_10023203; scaffold602 GLEAN mRNA 781902 798568 0.814164 + . ID=CGI_10023204; scaffold602 TRF Tandem_Repeat 787660 787694 56 + . . scaffold602 WUBlastX LTR_Gypsy 793975 794142 59 + . . scaffold602 WUBlastX LTR_Gypsy 794008 794142 72 + . . scaffold602 GLEAN mRNA 800573 802298 1 - . ID=CGI_10023205; scaffold602 TRF Tandem_Repeat 800998 801295 587 + . . scaffold602 GLEAN promoter 802299 803298 1 - . ID=CGI_10023205; scaffold602 GLEAN mRNA 802987 808185 1 - . ID=CGI_10023206; scaffold602 TRF Tandem_Repeat 804224 804250 54 + . . scaffold602 GLEAN promoter 808186 809185 1 - . ID=CGI_10023206; scaffold602 GLEAN promoter 812374 813373 1 + . ID=CGI_10023207; scaffold602 GLEAN mRNA 813374 814036 1 + . ID=CGI_10023207; scaffold602 GLEAN mRNA 816236 825607 0.650923 - . ID=CGI_10023208; scaffold602 TRF Tandem_Repeat 818656 818822 115 + . . scaffold602 TRF Tandem_Repeat 821613 821639 54 + . . scaffold602 TRF Tandem_Repeat 824106 824295 308 + . . scaffold602 GLEAN promoter 825608 826607 0.650923 - . ID=CGI_10023208; scaffold603 GLEAN mRNA 3055 9297 0.999999 - . ID=CGI_10009893; scaffold603 GLEAN promoter 9298 10297 0.999999 - . ID=CGI_10009893; scaffold603 WUBlastX LTR_Ngaro 12366 13013 110 + . . scaffold603 WUBlastX LTR_Ngaro 12597 13049 115 + . . scaffold603 WUBlastX LTR_Ngaro 12672 13049 127 + . . scaffold603 WUBlastX LTR_Ngaro 13090 13251 94 + . . scaffold603 GLEAN mRNA 13948 26603 0.533291 - . ID=CGI_10009894; scaffold603 WUBlastX LINE_L1 16477 16758 41 - . . scaffold603 WUBlastX LINE_L1 16504 16830 31 - . . scaffold603 WUBlastX LINE_L1-Tx1 17018 17824 231 - . . scaffold603 WUBlastX LINE_L1-Tx1 17883 18185 212 - . . scaffold603 WUBlastX LINE_L1 18167 18421 101 - . . scaffold603 WUBlastX LINE_L1-Tx1 18439 19599 151 - . . scaffold603 WUBlastX LINE_L1 19277 19675 35 - . . scaffold603 WUBlastX LINE_L1 20352 20453 23 - . . scaffold603 GLEAN promoter 26604 27603 0.533291 - . ID=CGI_10009894; scaffold603 TRF Tandem_Repeat 26932 26974 59 + . . scaffold603 TRF Tandem_Repeat 28036 28067 55 + . . scaffold603 WUBlastX LINE_CR1 35424 35936 22 - . . scaffold603 GLEAN mRNA 40144 40497 0.997946 - . ID=CGI_10009895; scaffold603 GLEAN promoter 40498 41497 0.997946 - . ID=CGI_10009895; scaffold603 GLEAN mRNA 40662 41345 0.769407 - . ID=CGI_10009896; scaffold603 GLEAN promoter 41346 42345 0.769407 - . ID=CGI_10009896; scaffold603 GLEAN mRNA 51350 56422 0.999114 - . ID=CGI_10009897; scaffold603 GLEAN promoter 56423 57422 0.999114 - . ID=CGI_10009897; scaffold603 GLEAN mRNA 70997 72443 0.615713 - . ID=CGI_10009898; scaffold603 GLEAN promoter 72444 73443 0.615713 - . ID=CGI_10009898; scaffold603 TRF Tandem_Repeat 73983 74027 72 + . . scaffold603 GLEAN promoter 76256 77255 0.999999 + . ID=CGI_10009899; scaffold603 GLEAN mRNA 77256 78707 0.999999 + . ID=CGI_10009899; scaffold603 WUBlastX DNA_Crypton 78288 78551 62 + . . scaffold603 GLEAN mRNA 79435 96856 0.361809 - . ID=CGI_10009900; scaffold603 TRF Tandem_Repeat 81802 81861 75 + . . scaffold603 TRF Tandem_Repeat 81806 81860 65 + . . scaffold603 TRF Tandem_Repeat 90196 91215 1514 + . . scaffold603 TRF Tandem_Repeat 91377 91426 57 + . . scaffold603 TRF Tandem_Repeat 93035 93205 147 + . . scaffold603 GLEAN promoter 96857 97856 0.361809 - . ID=CGI_10009900; scaffold603 GLEAN mRNA 98842 123775 0.808691 - . ID=CGI_10009901; scaffold603 TRF Tandem_Repeat 107373 107410 76 + . . scaffold603 TRF Tandem_Repeat 117634 117688 67 + . . scaffold603 TRF Tandem_Repeat 118388 118422 70 + . . scaffold603 TRF Tandem_Repeat 119110 119163 101 + . . scaffold603 TRF Tandem_Repeat 120952 120988 74 + . . scaffold603 GLEAN promoter 123776 124775 0.808691 - . ID=CGI_10009901; scaffold603 GLEAN mRNA 128200 130894 1 - . ID=CGI_10009902; scaffold603 GLEAN promoter 130895 131894 1 - . ID=CGI_10009902; scaffold603 TRF Tandem_Repeat 131079 131133 110 + . . scaffold603 TRF Tandem_Repeat 135534 135573 80 + . . scaffold603 GLEAN mRNA 136441 148815 0.999351 - . ID=CGI_10009903; scaffold603 GLEAN promoter 140742 141741 0.280956 + . ID=CGI_10009904; scaffold603 GLEAN mRNA 141742 157057 0.280956 + . ID=CGI_10009904; scaffold603 TRF Tandem_Repeat 146538 146576 60 + . . scaffold603 GLEAN promoter 148816 149815 0.999351 - . ID=CGI_10009903; scaffold603 TRF Tandem_Repeat 156040 156377 441 + . . scaffold603 GLEAN mRNA 158326 164604 1 - . ID=CGI_10009905; scaffold603 WUBlastX LTR_DIRS 161275 161379 60 + . . scaffold603 GLEAN promoter 164605 165604 1 - . ID=CGI_10009905; scaffold603 GLEAN mRNA 167799 172627 0.593357 - . ID=CGI_10009906; scaffold603 GLEAN promoter 172628 173627 0.593357 - . ID=CGI_10009906; scaffold603 TRF Tandem_Repeat 176822 176875 108 + . . scaffold603 GLEAN promoter 177493 178492 0.971948 + . ID=CGI_10009907; scaffold603 GLEAN mRNA 178493 197060 0.971948 + . ID=CGI_10009907; scaffold603 GLEAN mRNA 179021 184849 0.996062 - . ID=CGI_10009908; scaffold603 TRF Tandem_Repeat 183605 183657 106 + . . scaffold603 GLEAN promoter 184850 185849 0.996062 - . ID=CGI_10009908; scaffold603 GLEAN mRNA 184972 186233 0.997784 - . ID=CGI_10009909; scaffold603 GLEAN promoter 186234 187233 0.997784 - . ID=CGI_10009909; scaffold603 GLEAN mRNA 189540 196927 1 - . ID=CGI_10009910; scaffold603 TRF Tandem_Repeat 191344 191406 76 + . . scaffold603 TRF Tandem_Repeat 195215 195251 65 + . . scaffold603 TRF Tandem_Repeat 195725 195814 99 + . . scaffold603 GLEAN promoter 196901 197900 0.998866 + . ID=CGI_10009911; scaffold603 GLEAN promoter 196928 197927 1 - . ID=CGI_10009910; scaffold603 GLEAN mRNA 197901 202492 0.998866 + . ID=CGI_10009911; scaffold603 TRF Tandem_Repeat 199381 199425 90 + . . scaffold603 GLEAN mRNA 202360 217529 0.959591 - . ID=CGI_10009912; scaffold603 GLEAN promoter 206004 207003 0.618241 + . ID=CGI_10009913; scaffold603 GLEAN mRNA 207004 207210 0.618241 + . ID=CGI_10009913; scaffold603 TRF Tandem_Repeat 208118 208203 100 + . . scaffold603 TRF Tandem_Repeat 209621 209711 146 + . . scaffold603 GLEAN promoter 217530 218529 0.959591 - . ID=CGI_10009912; scaffold603 GLEAN promoter 224994 225993 0.997045 + . ID=CGI_10009915; scaffold603 GLEAN mRNA 225994 227086 0.997045 + . ID=CGI_10009915; scaffold603 WUBlastX LINE_RTE-X 227190 227972 127 + . . scaffold603 WUBlastX LINE_RTE-X 227220 227873 161 + . . scaffold603 TRF Tandem_Repeat 229354 229424 135 + . . scaffold603 WUBlastX LINE_RTE-X 229593 229679 20 + . . scaffold603 WUBlastX LINE_RTE-X 229793 229969 37 + . . scaffold603 TRF Tandem_Repeat 234008 234060 106 + . . scaffold603 TRF Tandem_Repeat 244284 244336 106 + . . scaffold604 TRF Tandem_Repeat 1400 1814 686 + . . scaffold604 GLEAN mRNA 6227 39101 0.995797 - . ID=CGI_10005590; scaffold604 WUBlastX LINE_L1-Tx1 14278 14487 92 + . . scaffold604 TRF Tandem_Repeat 18992 19064 56 + . . scaffold604 TRF Tandem_Repeat 33497 33540 54 + . . scaffold604 GLEAN promoter 39102 40101 0.995797 - . ID=CGI_10005590; scaffold604 GLEAN promoter 41759 42758 0.454666 + . ID=CGI_10005591; scaffold604 GLEAN mRNA 42759 53290 0.454666 + . ID=CGI_10005591; scaffold604 TRF Tandem_Repeat 42853 42890 76 + . . scaffold604 TRF Tandem_Repeat 44157 44194 76 + . . scaffold604 WUBlastX LINE_RTE-X 45084 45341 43 - . . scaffold604 WUBlastX LINE_RTE-X 45150 45341 50 - . . scaffold604 WUBlastX LINE_RTE-X 45198 45377 46 - . . scaffold604 WUBlastX LINE_RTE-X 45198 45338 54 - . . scaffold604 GLEAN mRNA 57111 64300 0.999924 - . ID=CGI_10005592; scaffold604 TRF Tandem_Repeat 57964 57988 50 + . . scaffold604 TRF Tandem_Repeat 59369 59438 140 + . . scaffold604 GLEAN promoter 64301 65300 0.999924 - . ID=CGI_10005592; scaffold604 TRF Tandem_Repeat 65776 66873 1483 + . . scaffold604 TRF Tandem_Repeat 67043 67073 53 + . . scaffold604 TRF Tandem_Repeat 67288 67356 120 + . . scaffold604 TRF Tandem_Repeat 71951 72019 129 + . . scaffold604 GLEAN promoter 72201 73200 1 + . ID=CGI_10005593; scaffold604 GLEAN mRNA 73201 75158 1 + . ID=CGI_10005593; scaffold604 GLEAN mRNA 77775 93282 0.925655 - . ID=CGI_10005594; scaffold604 GLEAN promoter 93283 94282 0.925655 - . ID=CGI_10005594; scaffold604 WUBlastX LTR_Ngaro 124011 124400 173 + . . scaffold604 WUBlastX LTR_Ngaro 124651 124968 55 + . . scaffold604 GLEAN promoter 126555 127554 1 + . ID=CGI_10005595; scaffold604 GLEAN mRNA 127555 128305 1 + . ID=CGI_10005595; scaffold605 GLEAN promoter 1 241 0.999769 + . ID=CGI_10004631; scaffold605 GLEAN mRNA 242 3208 0.999769 + . ID=CGI_10004631; scaffold605 GLEAN promoter 5739 6738 0.648316 + . ID=CGI_10004632; scaffold605 GLEAN mRNA 6739 14174 0.648316 + . ID=CGI_10004632; scaffold605 TRF Tandem_Repeat 9026 9067 50 + . . scaffold605 WUBlastX RC_Helitron 19412 19579 27 + . . scaffold605 WUBlastX DNA_Helitron 19454 19657 26 + . . scaffold605 WUBlastX RC_Helitron 19703 20134 146 + . . scaffold605 WUBlastX RC_Helitron 20128 20877 347 + . . scaffold605 WUBlastX RC_Helitron 20873 21346 365 + . . scaffold605 WUBlastX RC_Helitron 21343 22005 510 + . . scaffold605 WUBlastX RC_Helitron 21999 22631 306 + . . scaffold605 WUBlastX RC_Helitron 22676 23371 305 + . . scaffold605 WUBlastX RC_Helitron 22865 24775 358 + . . scaffold605 WUBlastX RC_Helitron 23201 24775 567 + . . scaffold605 WUBlastX RC_Helitron 24772 24927 30 + . . scaffold605 TRF Tandem_Repeat 31499 31559 122 + . . scaffold605 TRF Tandem_Repeat 32188 32245 116 + . . scaffold605 GLEAN promoter 40127 41126 1 + . ID=CGI_10004633; scaffold605 GLEAN mRNA 41127 44213 1 + . ID=CGI_10004633; scaffold605 WUBlastX RC_Helitron 42729 42977 36 + . . scaffold605 WUBlastX RC_Helitron 43551 44192 27 + . . scaffold605 TRF Tandem_Repeat 48472 48513 84 + . . scaffold605 WUBlastX RC_Helitron 53620 54240 93 + . . scaffold605 TRF Tandem_Repeat 54405 55276 1093 + . . scaffold605 TRF Tandem_Repeat 54406 55276 1228 + . . scaffold605 WUBlastX RC_Helitron 55318 57186 1079 + . . scaffold605 GLEAN promoter 67396 68395 0.965284 + . ID=CGI_10004634; scaffold605 GLEAN mRNA 68396 86498 0.965284 + . ID=CGI_10004634; scaffold605 TRF Tandem_Repeat 72053 73073 976 + . . scaffold605 TRF Tandem_Repeat 73906 73955 66 + . . scaffold605 TRF Tandem_Repeat 74121 74942 1218 + . . scaffold605 TRF Tandem_Repeat 80560 80906 427 + . . scaffold605 TRF Tandem_Repeat 80560 80906 445 + . . scaffold605 WUBlastX LINE_L1-Tx1 92268 92918 419 + . . scaffold605 TRF Tandem_Repeat 97503 97536 52 + . . scaffold606 WUBlastX LTR_Copia 2599 2709 23 - . . scaffold606 WUBlastX LTR_Gypsy 2629 3210 107 - . . scaffold606 WUBlastX LTR_Gypsy 2749 3687 699 - . . scaffold606 WUBlastX LTR_Gypsy 3659 5287 1699 - . . scaffold606 WUBlastX LTR_Gypsy 5287 6663 654 - . . scaffold606 GLEAN promoter 5984 6983 0.73346 + . ID=CGI_10012937; scaffold606 WUBlastX LTR_Gypsy-Troyk 6912 7067 81 + . . scaffold606 GLEAN mRNA 6984 7199 0.73346 + . ID=CGI_10012937; scaffold606 TRF Tandem_Repeat 8457 8493 65 + . . scaffold606 WUBlastX LTR_Gypsy-Troyk 11319 11441 67 + . . scaffold606 WUBlastX LTR_Gypsy-Troyk 11441 12214 442 + . . scaffold606 WUBlastX LTR_Gypsy-Troyk 12204 12752 609 + . . scaffold606 WUBlastX LTR_Gypsy-Troyk 12754 12933 111 + . . scaffold606 TRF Tandem_Repeat 13314 13365 104 + . . scaffold606 WUBlastX DNA_Harbinger 13622 13786 43 - . . scaffold606 WUBlastX DNA_Harbinger 13640 13834 29 - . . scaffold606 WUBlastX LTR_Gypsy-Troyk 14025 14333 328 + . . scaffold606 WUBlastX LTR_Gypsy-Troyk 14260 14679 321 + . . scaffold606 WUBlastX LINE_L1 17612 17713 40 + . . scaffold606 WUBlastX LINE_L1 17612 17683 42 + . . scaffold606 WUBlastX LINE_L1 17719 18111 49 + . . scaffold606 WUBlastX LINE_L1-Tx1 17728 18195 40 + . . scaffold606 WUBlastX LINE_L1 17737 18015 58 + . . scaffold606 WUBlastX LINE_L1 18222 18620 71 + . . scaffold606 WUBlastX LINE_L1-Tx1 18614 18658 22 + . . scaffold606 WUBlastX LINE_L1 19128 19205 23 + . . scaffold606 TRF Tandem_Repeat 37763 37813 50 + . . scaffold606 TRF Tandem_Repeat 37770 37813 54 + . . scaffold606 WUBlastX LINE_RTE-X 37861 38187 52 - . . scaffold606 WUBlastX LINE_RTE-X 37990 40161 786 - . . scaffold606 TRF Tandem_Repeat 41387 41458 63 + . . scaffold606 TRF Tandem_Repeat 41388 41462 78 + . . scaffold606 TRF Tandem_Repeat 41388 41458 52 + . . scaffold606 TRF Tandem_Repeat 41402 41456 55 + . . scaffold606 WUBlastX LINE_RTE-X 42312 42386 22 - . . scaffold606 WUBlastX LINE_RTE-X 42836 43849 235 - . . scaffold606 WUBlastX LINE_CR1 43508 43960 79 - . . scaffold606 GLEAN mRNA 43859 44197 0.901376 - . ID=CGI_10012938; scaffold606 GLEAN promoter 44198 45197 0.901376 - . ID=CGI_10012938; scaffold606 WUBlastX LINE_RTE-X 44821 44955 61 - . . scaffold606 GLEAN mRNA 47033 57290 0.711106 - . ID=CGI_10012939; scaffold606 GLEAN promoter 57291 58290 0.711106 - . ID=CGI_10012939; scaffold606 TRF Tandem_Repeat 57799 57848 91 + . . scaffold606 TRF Tandem_Repeat 60825 60879 110 + . . scaffold606 GLEAN mRNA 64022 68108 0.70137 - . ID=CGI_10012940; scaffold606 WUBlastX LINE_RTE-X 66955 67869 282 - . . scaffold606 TRF Tandem_Repeat 67989 68018 51 + . . scaffold606 GLEAN promoter 68109 69108 0.70137 - . ID=CGI_10012940; scaffold606 TRF Tandem_Repeat 71708 71756 98 + . . scaffold606 TRF Tandem_Repeat 72477 72515 69 + . . scaffold606 TRF Tandem_Repeat 73636 73681 92 + . . scaffold606 TRF Tandem_Repeat 76444 76523 151 + . . scaffold606 TRF Tandem_Repeat 80726 80775 100 + . . scaffold606 TRF Tandem_Repeat 82850 82876 54 + . . scaffold606 TRF Tandem_Repeat 84586 84648 126 + . . scaffold606 TRF Tandem_Repeat 87481 87541 115 + . . scaffold606 TRF Tandem_Repeat 87862 87907 58 + . . scaffold606 GLEAN promoter 88507 89506 0.999124 + . ID=CGI_10012941; scaffold606 GLEAN mRNA 89507 91168 0.999124 + . ID=CGI_10012941; scaffold606 TRF Tandem_Repeat 94090 94227 215 + . . scaffold606 TRF Tandem_Repeat 100223 100281 118 + . . scaffold606 TRF Tandem_Repeat 110010 110036 54 + . . scaffold606 TRF Tandem_Repeat 113512 113553 57 + . . scaffold606 GLEAN promoter 116966 117965 0.754165 + . ID=CGI_10012942; scaffold606 TRF Tandem_Repeat 117215 117317 170 + . . scaffold606 GLEAN mRNA 117966 118904 0.754165 + . ID=CGI_10012942; scaffold606 TRF Tandem_Repeat 121838 121903 91 + . . scaffold606 TRF Tandem_Repeat 121987 122051 112 + . . scaffold606 WUBlastX LINE_L2 123077 123313 33 + . . scaffold606 WUBlastX LINE_L2 123152 123316 44 + . . scaffold606 WUBlastX LINE_L2 123191 123322 46 + . . scaffold606 WUBlastX LINE_CR1 123351 125150 248 + . . scaffold606 WUBlastX LINE_CR1 123729 125882 384 + . . scaffold606 WUBlastX LINE_CR1-L2 124308 126098 552 + . . scaffold606 WUBlastX LINE_L2 125526 126239 201 + . . scaffold606 TRF Tandem_Repeat 131592 131638 94 + . . scaffold606 WUBlastX LINE_L1-Tx1 133748 135028 233 - . . scaffold606 WUBlastX LINE_L1-Tx1 134982 135359 190 - . . scaffold606 WUBlastX LINE_L1-Tx1 135286 136614 183 - . . scaffold606 WUBlastX LINE_L1-Tx1 135553 136536 339 - . . scaffold606 WUBlastX LINE_L1-Tx1 136542 137165 24 - . . scaffold606 WUBlastX LINE_L1 136802 136951 40 - . . scaffold606 WUBlastX LINE_L1-Tx1 136826 136960 47 - . . scaffold606 WUBlastX LINE_L1 136929 137204 37 - . . scaffold606 WUBlastX LINE_L1 136938 137159 79 - . . scaffold606 GLEAN promoter 140284 141283 0.995841 + . ID=CGI_10012943; scaffold606 GLEAN mRNA 141284 142945 0.995841 + . ID=CGI_10012943; scaffold606 TRF Tandem_Repeat 147979 148032 99 + . . scaffold606 GLEAN promoter 154626 155625 1 + . ID=CGI_10012944; scaffold606 GLEAN mRNA 155626 158240 1 + . ID=CGI_10012944; scaffold606 TRF Tandem_Repeat 158871 158943 146 + . . scaffold606 GLEAN mRNA 159126 177680 0.99991 - . ID=CGI_10012945; scaffold606 GLEAN promoter 165219 166218 0.777109 + . ID=CGI_10012946; scaffold606 GLEAN mRNA 166219 167484 0.777109 + . ID=CGI_10012946; scaffold606 TRF Tandem_Repeat 169141 169775 461 + . . scaffold606 TRF Tandem_Repeat 169876 169993 69 + . . scaffold606 GLEAN promoter 177681 178680 0.99991 - . ID=CGI_10012945; scaffold606 TRF Tandem_Repeat 179705 179758 81 + . . scaffold606 TRF Tandem_Repeat 179978 180075 127 + . . scaffold606 GLEAN mRNA 183569 190056 0.996988 - . ID=CGI_10012947; scaffold606 GLEAN promoter 190057 191056 0.996988 - . ID=CGI_10012947; scaffold606 WUBlastX LINE_Proto2 197281 197835 62 + . . scaffold606 WUBlastX LINE_Proto2 197368 197826 142 + . . scaffold606 WUBlastX LINE_L2-Hydra 197374 197919 85 + . . scaffold606 WUBlastX LINE_L2-Hydra 197931 198494 85 + . . scaffold606 WUBlastX LINE_Proto2 197937 198623 79 + . . scaffold606 WUBlastX LINE_R1 198180 198857 59 + . . scaffold606 WUBlastX LINE_RTE-X 198742 200103 231 + . . scaffold606 WUBlastX LINE_RTE-X 198961 200103 293 + . . scaffold606 WUBlastX LINE_CR1 199513 200232 84 + . . scaffold606 WUBlastX LINE_L1-Tx1 200524 200574 25 + . . scaffold606 GLEAN mRNA 205072 212919 0.983743 - . ID=CGI_10012948; scaffold606 WUBlastX LINE_Penelope 207337 207615 97 - . . scaffold606 GLEAN promoter 212920 213919 0.983743 - . ID=CGI_10012948; scaffold606 TRF Tandem_Repeat 219390 219443 108 + . . scaffold606 TRF Tandem_Repeat 222745 222769 50 + . . scaffold606 TRF Tandem_Repeat 224976 225028 106 + . . scaffold606 TRF Tandem_Repeat 227062 227088 54 + . . scaffold606 GLEAN mRNA 234657 237454 0.590027 - . ID=CGI_10012949; scaffold606 GLEAN promoter 237455 238454 0.590027 - . ID=CGI_10012949; scaffold606 TRF Tandem_Repeat 240544 240584 82 + . . scaffold606 GLEAN promoter 244559 245558 0.781509 + . ID=CGI_10012950; scaffold606 GLEAN mRNA 245559 254310 0.781509 + . ID=CGI_10012950; scaffold606 GLEAN promoter 255516 256515 0.999676 + . ID=CGI_10012951; scaffold606 GLEAN mRNA 256516 270880 0.999676 + . ID=CGI_10012951; scaffold606 TRF Tandem_Repeat 265436 265479 61 + . . scaffold606 TRF Tandem_Repeat 265668 267393 2076 + . . scaffold606 TRF Tandem_Repeat 277844 277905 106 + . . scaffold606 GLEAN promoter 277877 278876 0.993054 + . ID=CGI_10012952; scaffold606 GLEAN mRNA 278877 293845 0.993054 + . ID=CGI_10012952; scaffold606 TRF Tandem_Repeat 280048 280101 101 + . . scaffold606 TRF Tandem_Repeat 282974 283036 119 + . . scaffold606 TRF Tandem_Repeat 283414 283479 132 + . . scaffold606 GLEAN promoter 292884 293883 0.55655 + . ID=CGI_10012953; scaffold606 GLEAN mRNA 293884 294633 0.55655 + . ID=CGI_10012953; scaffold606 WUBlastX LTR_Gypsy 294596 294976 27 + . . scaffold606 WUBlastX LTR_Gypsy 294680 295288 209 + . . scaffold606 WUBlastX LTR_Gypsy 294839 295372 87 + . . scaffold606 WUBlastX LTR_Gypsy 295519 295602 26 + . . scaffold606 WUBlastX LTR_Gypsy 295528 295629 22 + . . scaffold606 WUBlastX LTR_Gypsy 295546 295581 28 + . . scaffold606 WUBlastX LTR_Gypsy 295638 296414 206 + . . scaffold606 GLEAN promoter 295790 296789 1 + . ID=CGI_10012954; scaffold606 WUBlastX LTR_Gypsy 295797 296414 211 + . . scaffold606 WUBlastX LTR_Gypsy 295905 296435 225 + . . scaffold606 WUBlastX LINE_L2 296623 296763 22 + . . scaffold606 WUBlastX LINE_CR1-L2 296709 297080 58 + . . scaffold606 GLEAN mRNA 296790 297152 1 + . ID=CGI_10012954; scaffold606 WUBlastX LINE_RTE-BovB 296802 297104 104 + . . scaffold606 WUBlastX LINE_L1-Tx1 297424 297579 94 + . . scaffold606 TRF Tandem_Repeat 299589 299711 185 + . . scaffold606 GLEAN mRNA 300990 332546 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 301169 301225 105 + . . scaffold606 TRF Tandem_Repeat 302332 302397 132 + . . scaffold606 TRF Tandem_Repeat 302814 302959 163 + . . scaffold606 TRF Tandem_Repeat 308433 308569 115 + . . scaffold606 TRF Tandem_Repeat 313488 313603 65 + . . scaffold606 TRF Tandem_Repeat 322236 322268 57 + . . scaffold606 TRF Tandem_Repeat 324822 325057 149 + . . scaffold606 TRF Tandem_Repeat 324881 325337 239 + . . scaffold606 TRF Tandem_Repeat 324981 325323 296 + . . scaffold606 GLEAN promoter 332547 333546 0.853994 - . ID=CGI_10012955; scaffold606 TRF Tandem_Repeat 336779 336823 72 + . . scaffold606 WUBlastX DNA_Harbinger 338898 339041 55 - . . scaffold606 WUBlastX DNA_Harbinger 338904 339005 93 - . . scaffold606 WUBlastX DNA_Harbinger 338926 339120 33 - . . scaffold606 WUBlastX DNA_Harbinger 339043 339153 21 - . . scaffold606 WUBlastX DNA_Harbinger 339232 339582 168 - . . scaffold606 WUBlastX DNA_Harbinger 340540 340722 62 - . . scaffold606 WUBlastX DNA_Harbinger 340552 340863 35 - . . scaffold608 GLEAN mRNA 415 684 1 - . ID=CGI_10003698; scaffold608 GLEAN promoter 685 1684 1 - . ID=CGI_10003698; scaffold608 GLEAN mRNA 2631 10420 0.993881 - . ID=CGI_10003699; scaffold608 TRF Tandem_Repeat 2831 4118 2228 + . . scaffold608 GLEAN promoter 5604 6603 0.817658 + . ID=CGI_10003700; scaffold608 GLEAN mRNA 6604 42818 0.817658 + . ID=CGI_10003700; scaffold608 TRF Tandem_Repeat 7144 8329 593 + . . scaffold608 GLEAN promoter 10421 11420 0.993881 - . ID=CGI_10003699; scaffold608 TRF Tandem_Repeat 27922 28610 975 + . . scaffold608 TRF Tandem_Repeat 27922 28610 913 + . . scaffold608 TRF Tandem_Repeat 27922 28610 936 + . . scaffold608 TRF Tandem_Repeat 32437 33495 1569 + . . scaffold608 TRF Tandem_Repeat 32437 33495 1595 + . . scaffold608 TRF Tandem_Repeat 34848 34877 51 + . . scaffold608 TRF Tandem_Repeat 36583 37174 871 + . . scaffold608 TRF Tandem_Repeat 37208 37466 150 + . . scaffold608 TRF Tandem_Repeat 39968 40249 465 + . . scaffold608 TRF Tandem_Repeat 39968 40287 405 + . . scaffold608 TRF Tandem_Repeat 44323 44582 403 + . . scaffold608 TRF Tandem_Repeat 46140 46475 215 + . . scaffold608 TRF Tandem_Repeat 46167 46441 261 + . . scaffold608 TRF Tandem_Repeat 46243 46421 124 + . . scaffold608 TRF Tandem_Repeat 46996 47036 73 + . . scaffold608 GLEAN mRNA 48241 52131 0.938268 - . ID=CGI_10003701; scaffold608 GLEAN promoter 52132 53131 0.938268 - . ID=CGI_10003701; scaffold608 WUBlastX LINE_L1-Tx1 53145 53825 39 - . . scaffold608 WUBlastX LINE_L1-Tx1 53277 53822 40 - . . scaffold608 WUBlastX LINE_L1 53661 53822 43 - . . scaffold608 WUBlastX LINE_L1-Tx1 53801 54232 105 - . . scaffold608 WUBlastX LINE_L1-Tx1 54532 55104 28 - . . scaffold608 WUBlastX LINE_L1-Tx1 54694 55662 136 - . . scaffold608 WUBlastX LINE_L1 54814 55422 151 - . . scaffold608 WUBlastX LINE_L1-Tx1 55627 55758 42 - . . scaffold608 TRF Tandem_Repeat 72227 73026 804 + . . scaffold609 GLEAN promoter 1 13 1 + . ID=CGI_10010457; scaffold609 GLEAN mRNA 14 5968 1 + . ID=CGI_10010457; scaffold609 GLEAN promoter 5088 6087 1 + . ID=CGI_10010458; scaffold609 GLEAN mRNA 6088 8972 1 + . ID=CGI_10010458; scaffold609 TRF Tandem_Repeat 7184 7217 68 + . . scaffold609 TRF Tandem_Repeat 7641 7682 84 + . . scaffold609 TRF Tandem_Repeat 7841 7882 84 + . . scaffold609 GLEAN promoter 12726 13725 0.992092 + . ID=CGI_10010459; scaffold609 GLEAN mRNA 13726 21013 0.992092 + . ID=CGI_10010459; scaffold609 TRF Tandem_Repeat 25220 25331 199 + . . scaffold609 WUBlastX LINE_L1-Tx1 27699 28181 64 + . . scaffold609 TRF Tandem_Repeat 29428 29477 100 + . . scaffold609 TRF Tandem_Repeat 37562 37589 56 + . . scaffold609 GLEAN promoter 38907 39906 0.840332 + . ID=CGI_10010460; scaffold609 GLEAN mRNA 39907 41581 0.840332 + . ID=CGI_10010460; scaffold609 TRF Tandem_Repeat 46431 46490 77 + . . scaffold609 WUBlastX LTR_DIRS 58303 58449 71 + . . scaffold609 WUBlastX LTR_DIRS 61080 61226 69 + . . scaffold609 WUBlastX LINE_L1 62946 63968 434 + . . scaffold609 WUBlastX LINE_L1-Tx1 63988 67776 1624 + . . scaffold609 WUBlastX LTR_DIRS 70265 70492 77 + . . scaffold609 TRF Tandem_Repeat 70800 70837 58 + . . scaffold609 WUBlastX LTR_DIRS 71334 71498 34 + . . scaffold609 TRF Tandem_Repeat 82057 82086 51 + . . scaffold609 GLEAN mRNA 86356 87288 0.777732 - . ID=CGI_10010461; scaffold609 GLEAN promoter 87289 88288 0.777732 - . ID=CGI_10010461; scaffold609 TRF Tandem_Repeat 93842 93879 60 + . . scaffold609 TRF Tandem_Repeat 101961 102695 502 + . . scaffold609 WUBlastX LTR_Gypsy 104842 106017 212 - . . scaffold609 WUBlastX LTR_Gypsy 104842 105759 251 - . . scaffold609 WUBlastX LTR_Gypsy 106692 106802 24 - . . scaffold609 WUBlastX LTR_Ngaro 144544 144978 120 + . . scaffold609 WUBlastX LTR_Ngaro 144939 145172 49 + . . scaffold609 WUBlastX LTR_Ngaro 144993 145214 32 + . . scaffold609 WUBlastX LINE_L1 149870 150067 23 + . . scaffold609 TRF Tandem_Repeat 151367 151431 105 + . . scaffold609 GLEAN promoter 154381 155380 0.999519 + . ID=CGI_10010462; scaffold609 GLEAN mRNA 155381 158287 0.999519 + . ID=CGI_10010462; scaffold609 TRF Tandem_Repeat 159456 159489 68 + . . scaffold609 GLEAN mRNA 159861 164302 0.999999 - . ID=CGI_10010463; scaffold609 GLEAN promoter 164303 165302 0.999999 - . ID=CGI_10010463; scaffold609 TRF Tandem_Repeat 171298 171359 124 + . . scaffold609 TRF Tandem_Repeat 172473 172539 125 + . . scaffold609 TRF Tandem_Repeat 174299 174358 120 + . . scaffold609 TRF Tandem_Repeat 177522 177577 103 + . . scaffold609 TRF Tandem_Repeat 180127 180198 135 + . . scaffold609 TRF Tandem_Repeat 181207 181245 78 + . . scaffold609 GLEAN promoter 182215 183214 0.840088 + . ID=CGI_10010464; scaffold609 GLEAN mRNA 183215 213482 0.840088 + . ID=CGI_10010464; scaffold609 WUBlastX LINE_RTE-X 186076 186438 102 - . . scaffold609 WUBlastX LINE_RTE-X 186214 186438 130 - . . scaffold609 GLEAN mRNA 214821 223352 0.999395 - . ID=CGI_10010465; scaffold609 GLEAN promoter 215519 216518 0.999675 + . ID=CGI_10010466; scaffold609 GLEAN mRNA 216519 228575 0.999675 + . ID=CGI_10010466; scaffold609 GLEAN promoter 223353 224352 0.999395 - . ID=CGI_10010465; scaffold609 GLEAN promoter 229368 230367 0.803855 + . ID=CGI_10010467; scaffold609 GLEAN mRNA 230368 237424 0.803855 + . ID=CGI_10010467; scaffold609 GLEAN mRNA 240357 241721 1 - . ID=CGI_10010468; scaffold609 GLEAN promoter 241722 242721 1 - . ID=CGI_10010468; scaffold609 TRF Tandem_Repeat 242600 242640 82 + . . scaffold609 TRF Tandem_Repeat 243791 243827 74 + . . scaffold609 GLEAN promoter 249756 250755 0.928071 + . ID=CGI_10010469; scaffold609 GLEAN mRNA 250756 251196 0.928071 + . ID=CGI_10010469; scaffold609 TRF Tandem_Repeat 251714 251747 68 + . . scaffold609 GLEAN promoter 252862 253861 0.928071 + . ID=CGI_10010470; scaffold609 GLEAN mRNA 253862 261567 0.928071 + . ID=CGI_10010470; scaffold61 TRF Tandem_Repeat 18780 18825 92 + . . scaffold61 GLEAN mRNA 22115 28495 0.978118 - . ID=CGI_10016336; scaffold61 TRF Tandem_Repeat 24170 24227 50 + . . scaffold61 TRF Tandem_Repeat 24170 24239 62 + . . scaffold61 TRF Tandem_Repeat 24171 24237 50 + . . scaffold61 GLEAN promoter 28496 29495 0.978118 - . ID=CGI_10016336; scaffold61 TRF Tandem_Repeat 31578 31644 134 + . . scaffold61 GLEAN promoter 35076 36075 0.936561 + . ID=CGI_10016337; scaffold61 WUBlastX LINE_RTE-X 35154 35240 39 + . . scaffold61 WUBlastX LINE_RTE-X 35172 35930 72 + . . scaffold61 GLEAN mRNA 36076 46070 0.936561 + . ID=CGI_10016337; scaffold61 WUBlastX LINE_RTE-X 41748 41906 53 + . . scaffold61 GLEAN promoter 46626 47625 0.970077 + . ID=CGI_10016338; scaffold61 GLEAN mRNA 47626 50465 0.970077 + . ID=CGI_10016338; scaffold61 GLEAN promoter 51320 52319 0.583706 + . ID=CGI_10016339; scaffold61 GLEAN mRNA 52320 65245 0.583706 + . ID=CGI_10016339; scaffold61 TRF Tandem_Repeat 57773 57814 84 + . . scaffold61 TRF Tandem_Repeat 60341 60534 130 + . . scaffold61 GLEAN promoter 64762 65761 0.819203 + . ID=CGI_10016340; scaffold61 GLEAN mRNA 65762 76435 0.819203 + . ID=CGI_10016340; scaffold61 GLEAN mRNA 78092 81660 1 - . ID=CGI_10016341; scaffold61 GLEAN promoter 81661 82660 1 - . ID=CGI_10016341; scaffold61 TRF Tandem_Repeat 82871 82901 62 + . . scaffold61 GLEAN mRNA 83781 97404 0.999676 - . ID=CGI_10016342; scaffold61 WUBlastX LINE_Jockey 90273 90362 20 + . . scaffold61 WUBlastX LINE_RTE-X 91091 91441 68 + . . scaffold61 WUBlastX LINE_RTE-X 91091 91372 91 + . . scaffold61 WUBlastX LINE_RTE-X 91091 91549 30 + . . scaffold61 TRF Tandem_Repeat 91789 91877 171 + . . scaffold61 WUBlastX LINE_RTE-X 91956 92267 123 + . . scaffold61 WUBlastX LINE_RTE-X 92046 92312 115 + . . scaffold61 WUBlastX LINE_RTE-X 92046 92267 151 + . . scaffold61 WUBlastX LINE_RTE-X 92270 92707 104 + . . scaffold61 TRF Tandem_Repeat 94155 94208 108 + . . scaffold61 GLEAN promoter 97405 98404 0.999676 - . ID=CGI_10016342; scaffold61 TRF Tandem_Repeat 97452 97504 106 + . . scaffold61 GLEAN promoter 99550 100549 0.432439 + . ID=CGI_10016343; scaffold61 GLEAN mRNA 100550 103499 0.432439 + . ID=CGI_10016343; scaffold61 GLEAN promoter 102827 103826 1 + . ID=CGI_10016344; scaffold61 GLEAN mRNA 103827 107291 1 + . ID=CGI_10016344; scaffold61 WUBlastX DNA_Merlin 119856 120638 74 - . . scaffold61 WUBlastX DNA_Merlin 120058 120303 113 - . . scaffold61 TRF Tandem_Repeat 131236 131302 89 + . . scaffold61 GLEAN promoter 131697 132696 1 + . ID=CGI_10016345; scaffold61 GLEAN mRNA 132697 137017 1 + . ID=CGI_10016345; scaffold61 TRF Tandem_Repeat 136290 136327 76 + . . scaffold61 WUBlastX DNA_Academ 162238 163875 835 - . . scaffold61 WUBlastX DNA_Academ 164016 164786 492 - . . scaffold61 GLEAN mRNA 164819 186758 0.205101 - . ID=CGI_10016346; scaffold61 WUBlastX DNA_Academ 164918 165574 152 - . . scaffold61 WUBlastX DNA_Academ 165152 165775 381 - . . scaffold61 WUBlastX DNA_Academ 165771 166871 554 - . . scaffold61 WUBlastX DNA_Academ 165774 167135 395 - . . scaffold61 TRF Tandem_Repeat 169426 169469 88 + . . scaffold61 TRF Tandem_Repeat 177374 177423 55 + . . scaffold61 TRF Tandem_Repeat 179050 179103 90 + . . scaffold61 WUBlastX LINE_L2 185211 186080 259 - . . scaffold61 WUBlastX LINE_L2 185250 186302 59 - . . scaffold61 GLEAN promoter 186759 187758 0.205101 - . ID=CGI_10016346; scaffold61 TRF Tandem_Repeat 188919 188968 100 + . . scaffold61 GLEAN promoter 188931 189930 1 + . ID=CGI_10016347; scaffold61 WUBlastX DNA_Sola 189652 190515 31 + . . scaffold61 GLEAN mRNA 189931 192038 1 + . ID=CGI_10016347; scaffold61 WUBlastX DNA_Sola 191151 191297 70 + . . scaffold61 WUBlastX DNA_Sola 191547 191753 43 + . . scaffold61 TRF Tandem_Repeat 195840 195895 71 + . . scaffold61 TRF Tandem_Repeat 195844 195898 65 + . . scaffold61 TRF Tandem_Repeat 197052 197100 57 + . . scaffold61 GLEAN promoter 216270 217269 0.99996 + . ID=CGI_10016348; scaffold61 GLEAN mRNA 217270 220894 0.99996 + . ID=CGI_10016348; scaffold61 TRF Tandem_Repeat 218342 218390 98 + . . scaffold61 WUBlastX LINE_RTE-X 223059 224102 315 - . . scaffold61 WUBlastX LINE_RTE-X 224105 224404 171 - . . scaffold61 WUBlastX LINE_RTE-X 224117 224476 156 - . . scaffold61 WUBlastX LINE_Jockey 224150 224548 48 - . . scaffold61 GLEAN promoter 231000 231999 0.920453 + . ID=CGI_10016349; scaffold61 GLEAN mRNA 232000 241074 0.920453 + . ID=CGI_10016349; scaffold61 TRF Tandem_Repeat 239603 239647 56 + . . scaffold61 GLEAN promoter 245939 246938 0.999593 + . ID=CGI_10016350; scaffold61 GLEAN mRNA 246939 250105 0.999593 + . ID=CGI_10016350; scaffold61 GLEAN promoter 249928 250927 0.999918 + . ID=CGI_10016351; scaffold61 GLEAN mRNA 250928 271169 0.999918 + . ID=CGI_10016351; scaffold61 TRF Tandem_Repeat 259051 259115 67 + . . scaffold61 TRF Tandem_Repeat 259073 259143 70 + . . scaffold61 TRF Tandem_Repeat 259075 259119 63 + . . scaffold61 TRF Tandem_Repeat 259113 259147 70 + . . scaffold61 GLEAN promoter 271810 272809 0.999973 + . ID=CGI_10016352; scaffold61 GLEAN mRNA 272810 283798 0.999973 + . ID=CGI_10016352; scaffold61 TRF Tandem_Repeat 274976 275007 55 + . . scaffold61 TRF Tandem_Repeat 280682 280735 108 + . . scaffold61 TRF Tandem_Repeat 280735 280768 68 + . . scaffold61 GLEAN promoter 284608 285607 0.558407 + . ID=CGI_10016353; scaffold61 GLEAN mRNA 285608 293383 0.558407 + . ID=CGI_10016353; scaffold61 TRF Tandem_Repeat 289255 289288 52 + . . scaffold61 TRF Tandem_Repeat 296103 296144 84 + . . scaffold61 GLEAN promoter 298083 299082 0.648556 + . ID=CGI_10016354; scaffold61 GLEAN mRNA 299083 301798 0.648556 + . ID=CGI_10016354; scaffold61 GLEAN promoter 308671 309670 0.326068 + . ID=CGI_10016355; scaffold61 GLEAN mRNA 309671 310861 0.326068 + . ID=CGI_10016355; scaffold61 GLEAN promoter 309989 310988 0.569038 + . ID=CGI_10016356; scaffold61 GLEAN mRNA 310989 311408 0.569038 + . ID=CGI_10016356; scaffold61 GLEAN promoter 335382 336381 1 + . ID=CGI_10016357; scaffold61 GLEAN mRNA 336382 338409 1 + . ID=CGI_10016357; scaffold61 GLEAN promoter 340120 341119 0.999914 + . ID=CGI_10016358; scaffold61 GLEAN mRNA 341120 365215 0.999914 + . ID=CGI_10016358; scaffold61 GLEAN promoter 372634 373633 0.996603 + . ID=CGI_10016359; scaffold61 GLEAN mRNA 373634 385381 0.996603 + . ID=CGI_10016359; scaffold61 WUBlastX LTR_DIRS 387499 387864 53 - . . scaffold61 WUBlastX LTR_DIRS 388457 388867 44 - . . scaffold61 WUBlastX LTR_DIRS 388872 389018 45 - . . scaffold61 WUBlastX LTR_DIRS 389005 389211 54 - . . scaffold61 WUBlastX LTR_DIRS 389041 389190 60 - . . scaffold61 WUBlastX LTR_DIRS 389566 390264 76 - . . scaffold61 WUBlastX DNA_TcMar-Tc1 392619 393494 293 - . . scaffold61 GLEAN mRNA 396662 401282 0.86652 - . ID=CGI_10016361; scaffold61 TRF Tandem_Repeat 397547 397627 114 + . . scaffold61 GLEAN promoter 401283 402282 0.86652 - . ID=CGI_10016361; scaffold61 GLEAN mRNA 417013 421853 1 - . ID=CGI_10016362; scaffold61 GLEAN promoter 421854 422853 1 - . ID=CGI_10016362; scaffold61 GLEAN promoter 424508 425507 1 + . ID=CGI_10016363; scaffold61 GLEAN mRNA 425508 427438 1 + . ID=CGI_10016363; scaffold61 GLEAN promoter 428106 429105 0.931624 + . ID=CGI_10016364; scaffold61 GLEAN mRNA 429106 433852 0.931624 + . ID=CGI_10016364; scaffold61 WUBlastX LINE_L2 435601 436446 440 - . . scaffold61 WUBlastX LINE_L2 436451 438961 1546 - . . scaffold61 WUBlastX LINE_L2 438908 439006 22 - . . scaffold61 GLEAN mRNA 440265 444476 1 - . ID=CGI_10016365; scaffold61 TRF Tandem_Repeat 443946 443977 64 + . . scaffold61 TRF Tandem_Repeat 444320 444346 54 + . . scaffold61 GLEAN promoter 444477 445476 1 - . ID=CGI_10016365; scaffold61 GLEAN promoter 459348 460347 1 + . ID=CGI_10016366; scaffold61 GLEAN mRNA 460348 462827 1 + . ID=CGI_10016366; scaffold610 WUBlastX LTR_Gypsy-Cigr 522 590 25 + . . scaffold610 WUBlastX LTR_Gypsy 767 1102 92 + . . scaffold610 WUBlastX LTR_Gypsy 833 1066 123 + . . scaffold610 WUBlastX LTR_Gypsy 833 1135 107 + . . scaffold610 WUBlastX LTR_Gypsy 1107 1370 56 + . . scaffold610 WUBlastX LTR_Gypsy 1775 2125 53 + . . scaffold610 WUBlastX LTR_Gypsy 1841 2125 88 + . . scaffold610 WUBlastX DNA_Kolobok 15539 15787 129 + . . scaffold610 GLEAN promoter 18426 19425 0.987056 + . ID=CGI_10021082; scaffold610 GLEAN mRNA 19426 23428 0.987056 + . ID=CGI_10021082; scaffold610 WUBlastX DNA_hAT-Ac 19453 19566 100 + . . scaffold610 WUBlastX DNA_TcMar-Pogo 30334 30501 48 + . . scaffold610 WUBlastX DNA_TcMar-Pogo 30384 31070 164 + . . scaffold610 WUBlastX DNA_TcMar-Pogo 30549 31070 165 + . . scaffold610 GLEAN mRNA 32875 38108 0.999999 - . ID=CGI_10021084; scaffold610 GLEAN promoter 38109 39108 0.999999 - . ID=CGI_10021084; scaffold610 GLEAN mRNA 46151 52529 0.550133 - . ID=CGI_10021085; scaffold610 GLEAN promoter 52530 53529 0.550133 - . ID=CGI_10021085; scaffold610 WUBlastX DNA_TcMar-Tc1 52823 53056 36 - . . scaffold610 TRF Tandem_Repeat 66201 66905 1132 + . . scaffold610 GLEAN mRNA 68889 74778 0.999999 - . ID=CGI_10021087; scaffold610 GLEAN promoter 74779 75778 0.999999 - . ID=CGI_10021087; scaffold610 TRF Tandem_Repeat 79581 79809 176 + . . scaffold610 TRF Tandem_Repeat 80977 81474 301 + . . scaffold610 TRF Tandem_Repeat 80982 81475 332 + . . scaffold610 TRF Tandem_Repeat 82158 82232 68 + . . scaffold610 WUBlastX DNA_TcMar-Fot1 86043 86489 104 + . . scaffold610 WUBlastX DNA_TcMar-Fot1 86483 86617 39 + . . scaffold610 WUBlastX LINE_RTE-X 95211 95564 119 + . . scaffold610 WUBlastX LINE_RTE-X 95576 95797 113 + . . scaffold610 WUBlastX LINE_RTE-X 95582 95998 62 + . . scaffold610 WUBlastX LINE_RTE-X 96283 96555 27 + . . scaffold610 WUBlastX DNA_TcMar-Fot1 97968 98390 66 + . . scaffold610 WUBlastX DNA_TcMar-Fot1 98390 98434 20 + . . scaffold610 WUBlastX DNA_TcMar-Fot1 98428 98562 27 + . . scaffold610 TRF Tandem_Repeat 99297 100090 1150 + . . scaffold610 TRF Tandem_Repeat 100121 100152 55 + . . scaffold610 TRF Tandem_Repeat 100272 101138 1148 + . . scaffold610 GLEAN promoter 100538 101537 0.827114 + . ID=CGI_10021088; scaffold610 GLEAN mRNA 101538 106463 0.827114 + . ID=CGI_10021088; scaffold610 TRF Tandem_Repeat 103532 104194 995 + . . scaffold610 WUBlastX DNA_IS4EU 104503 105033 310 + . . scaffold610 WUBlastX DNA_IS4EU 105027 105155 51 + . . scaffold610 WUBlastX DNA_Kolobok-IS4 105261 105521 56 - . . scaffold610 WUBlastX DNA_IS4EU 105345 105563 86 - . . scaffold610 WUBlastX DNA_Kolobok-IS4 105605 105919 48 - . . scaffold610 WUBlastX DNA_IS4EU 105701 106018 94 - . . scaffold610 WUBlastX DNA_Kolobok-IS4 106122 106217 26 - . . scaffold610 GLEAN mRNA 106328 109060 0.984177 - . ID=CGI_10021089; scaffold610 WUBlastX DNA_Kolobok-IS4 106610 106813 24 - . . scaffold610 GLEAN promoter 109061 110060 0.984177 - . ID=CGI_10021089; scaffold610 WUBlastX LTR_Gypsy 117201 117752 86 - . . scaffold610 WUBlastX LTR_Gypsy 117231 117695 123 - . . scaffold610 GLEAN mRNA 123815 124021 0.999999 - . ID=CGI_10021091; scaffold610 GLEAN promoter 124022 125021 0.999999 - . ID=CGI_10021091; scaffold610 WUBlastX DNA_Harbinger 124908 125171 32 - . . scaffold610 WUBlastX DNA_Harbinger 125046 125366 94 - . . scaffold610 WUBlastX DNA_Harbinger 125106 125426 63 - . . scaffold610 GLEAN promoter 125484 126483 0.728666 + . ID=CGI_10021092; scaffold610 GLEAN mRNA 126484 141606 0.728666 + . ID=CGI_10021092; scaffold610 WUBlastX LTR_Gypsy 128880 129476 85 - . . scaffold610 WUBlastX LTR_Gypsy-Cigr 128988 129476 152 - . . scaffold610 WUBlastX LTR_Gypsy 129318 129509 116 - . . scaffold610 WUBlastX LTR_Gypsy-Cigr 129490 129825 99 - . . scaffold610 WUBlastX LTR_Gypsy 129884 130540 69 - . . scaffold610 WUBlastX LTR_Gypsy 129884 130237 135 - . . scaffold610 WUBlastX LTR_Gypsy-Cigr 129944 130372 198 - . . scaffold610 TRF Tandem_Repeat 141520 141552 50 + . . scaffold610 GLEAN mRNA 151610 164982 0.997998 - . ID=CGI_10021094; scaffold610 GLEAN promoter 164983 165982 0.997998 - . ID=CGI_10021094; scaffold610 TRF Tandem_Repeat 167163 167210 78 + . . scaffold610 TRF Tandem_Repeat 169216 169596 726 + . . scaffold610 WUBlastX LINE_L2 175071 176438 736 - . . scaffold610 WUBlastX LINE_L2 176434 177747 695 - . . scaffold610 WUBlastX LINE_CR1-L2 177807 178049 51 - . . scaffold610 WUBlastX LINE_CR1-L2 177855 178190 80 - . . scaffold610 WUBlastX LINE_CR1-L2 177864 178049 83 - . . scaffold610 WUBlastX LINE_L2 177885 178298 29 - . . scaffold610 GLEAN promoter 179560 180559 0.775385 + . ID=CGI_10021095; scaffold610 GLEAN promoter 180356 181355 0.998898 + . ID=CGI_10021096; scaffold610 GLEAN mRNA 180560 181108 0.775385 + . ID=CGI_10021095; scaffold610 GLEAN mRNA 181356 182252 0.998898 + . ID=CGI_10021096; scaffold610 TRF Tandem_Repeat 191597 191638 75 + . . scaffold610 GLEAN promoter 192815 193814 0.83621 + . ID=CGI_10021097; scaffold610 GLEAN mRNA 193815 195413 0.83621 + . ID=CGI_10021097; scaffold610 GLEAN mRNA 198472 208397 1 - . ID=CGI_10021098; scaffold610 TRF Tandem_Repeat 200155 200182 56 + . . scaffold610 TRF Tandem_Repeat 202136 202186 93 + . . scaffold610 GLEAN promoter 207724 208723 0.722011 + . ID=CGI_10021099; scaffold610 GLEAN promoter 208398 209397 1 - . ID=CGI_10021098; scaffold610 GLEAN mRNA 208724 225365 0.722011 + . ID=CGI_10021099; scaffold610 TRF Tandem_Repeat 210674 210723 100 + . . scaffold610 TRF Tandem_Repeat 229862 229905 88 + . . scaffold610 GLEAN mRNA 233461 235131 0.999999 - . ID=CGI_10021100; scaffold610 GLEAN promoter 235132 236131 0.999999 - . ID=CGI_10021100; scaffold610 GLEAN promoter 238004 239003 1 + . ID=CGI_10021102; scaffold610 TRF Tandem_Repeat 238774 238803 51 + . . scaffold610 GLEAN mRNA 239004 244016 1 + . ID=CGI_10021102; scaffold610 WUBlastX LINE_L2 239037 239354 79 - . . scaffold610 WUBlastX LINE_L2 239091 239360 132 - . . scaffold610 GLEAN mRNA 248125 249801 0.999999 - . ID=CGI_10021103; scaffold610 GLEAN promoter 249802 250801 0.999999 - . ID=CGI_10021103; scaffold610 TRF Tandem_Repeat 252128 252190 126 + . . scaffold610 TRF Tandem_Repeat 254009 254076 59 + . . scaffold610 TRF Tandem_Repeat 254188 254365 51 + . . scaffold610 TRF Tandem_Repeat 254197 254658 297 + . . scaffold610 TRF Tandem_Repeat 254305 254362 57 + . . scaffold610 TRF Tandem_Repeat 254362 254458 86 + . . scaffold610 GLEAN promoter 256596 257595 1 + . ID=CGI_10021104; scaffold610 GLEAN mRNA 257596 258177 1 + . ID=CGI_10021104; scaffold610 GLEAN promoter 259026 260025 0.999984 + . ID=CGI_10021105; scaffold610 GLEAN mRNA 260026 260673 0.999984 + . ID=CGI_10021105; scaffold610 GLEAN promoter 262732 263731 0.539647 + . ID=CGI_10021106; scaffold610 GLEAN mRNA 263732 272287 0.539647 + . ID=CGI_10021106; scaffold610 GLEAN promoter 277888 278887 0.9996 + . ID=CGI_10021107; scaffold610 GLEAN mRNA 278888 282376 0.9996 + . ID=CGI_10021107; scaffold610 WUBlastX LTR_Ngaro 279838 280491 474 - . . scaffold610 WUBlastX LTR_Ngaro 280583 281212 73 - . . scaffold610 WUBlastX LTR_Ngaro 280742 281446 216 - . . scaffold610 WUBlastX LTR_Pao 292766 293053 111 - . . scaffold610 WUBlastX LTR_Pao 293059 293172 72 - . . scaffold610 WUBlastX LTR_Pao 293175 293456 128 - . . scaffold610 WUBlastX LTR_Pao 293175 293519 58 - . . scaffold610 WUBlastX LINE_L1-Tx1 294997 295464 24 - . . scaffold610 WUBlastX LINE_L1 295147 295491 77 - . . scaffold610 WUBlastX LINE_L1-Tx1 295493 295618 56 - . . scaffold610 GLEAN mRNA 296241 299802 0.999555 - . ID=CGI_10021108; scaffold610 GLEAN promoter 299803 300802 0.999555 - . ID=CGI_10021108; scaffold610 GLEAN mRNA 302356 324942 0.826763 - . ID=CGI_10021109; scaffold610 TRF Tandem_Repeat 304483 304784 363 + . . scaffold610 TRF Tandem_Repeat 305333 305386 108 + . . scaffold610 TRF Tandem_Repeat 317128 317454 288 + . . scaffold610 TRF Tandem_Repeat 318364 318399 63 + . . scaffold610 GLEAN promoter 324943 325942 0.826763 - . ID=CGI_10021109; scaffold610 GLEAN mRNA 325340 328316 0.643213 - . ID=CGI_10021110; scaffold610 GLEAN promoter 328317 329316 0.643213 - . ID=CGI_10021110; scaffold610 GLEAN promoter 333816 334815 0.211385 + . ID=CGI_10021111; scaffold610 GLEAN mRNA 334816 345114 0.211385 + . ID=CGI_10021111; scaffold610 TRF Tandem_Repeat 335614 335693 144 + . . scaffold610 TRF Tandem_Repeat 336359 336411 106 + . . scaffold610 TRF Tandem_Repeat 341935 342119 129 + . . scaffold610 TRF Tandem_Repeat 341957 342136 168 + . . scaffold610 TRF Tandem_Repeat 341958 342127 139 + . . scaffold610 GLEAN promoter 344168 345167 0.558382 + . ID=CGI_10021112; scaffold610 GLEAN mRNA 345168 349593 0.558382 + . ID=CGI_10021112; scaffold610 TRF Tandem_Repeat 351225 351283 118 + . . scaffold610 GLEAN promoter 355940 356939 0.999984 + . ID=CGI_10021113; scaffold610 GLEAN mRNA 356940 358331 0.999984 + . ID=CGI_10021113; scaffold610 GLEAN promoter 359077 360076 1 + . ID=CGI_10021114; scaffold610 GLEAN mRNA 360077 362005 1 + . ID=CGI_10021114; scaffold610 GLEAN promoter 363649 364648 0.999676 + . ID=CGI_10021115; scaffold610 GLEAN mRNA 364649 366203 0.999676 + . ID=CGI_10021115; scaffold610 GLEAN promoter 368331 369330 1 + . ID=CGI_10021116; scaffold610 GLEAN mRNA 369331 371296 1 + . ID=CGI_10021116; scaffold610 TRF Tandem_Repeat 370137 370182 92 + . . scaffold610 GLEAN mRNA 373045 382308 0.935486 - . ID=CGI_10021117; scaffold610 GLEAN promoter 381879 382878 0.999982 + . ID=CGI_10021118; scaffold610 GLEAN promoter 382309 383308 0.935486 - . ID=CGI_10021117; scaffold610 GLEAN mRNA 382879 383503 0.999982 + . ID=CGI_10021118; scaffold610 GLEAN promoter 388884 389883 1 + . ID=CGI_10021119; scaffold610 GLEAN mRNA 389884 390471 1 + . ID=CGI_10021119; scaffold610 GLEAN mRNA 392138 400369 0.996028 - . ID=CGI_10021120; scaffold610 GLEAN promoter 400370 401369 0.996028 - . ID=CGI_10021120; scaffold610 GLEAN promoter 400913 401912 1 + . ID=CGI_10021121; scaffold610 GLEAN mRNA 401913 403891 1 + . ID=CGI_10021121; scaffold610 GLEAN mRNA 402284 405352 0.991071 - . ID=CGI_10021122; scaffold610 GLEAN promoter 405353 406352 0.991071 - . ID=CGI_10021122; scaffold610 TRF Tandem_Repeat 405800 405859 120 + . . scaffold610 TRF Tandem_Repeat 411296 411333 76 + . . scaffold610 GLEAN promoter 411586 412585 1 + . ID=CGI_10021123; scaffold610 TRF Tandem_Repeat 411812 411873 110 + . . scaffold610 GLEAN mRNA 412586 424205 1 + . ID=CGI_10021123; scaffold610 TRF Tandem_Repeat 435345 435838 460 + . . scaffold610 TRF Tandem_Repeat 435368 435838 403 + . . scaffold610 TRF Tandem_Repeat 436918 440862 2865 + . . scaffold610 TRF Tandem_Repeat 436918 440862 2972 + . . scaffold610 TRF Tandem_Repeat 438326 439373 322 + . . scaffold610 TRF Tandem_Repeat 439040 440862 1343 + . . scaffold610 TRF Tandem_Repeat 439515 439661 73 + . . scaffold610 TRF Tandem_Repeat 440495 440626 104 + . . scaffold610 TRF Tandem_Repeat 440866 441252 392 + . . scaffold610 TRF Tandem_Repeat 442017 442927 289 + . . scaffold610 GLEAN promoter 443235 444234 0.999372 + . ID=CGI_10021124; scaffold610 GLEAN mRNA 444235 444441 0.999372 + . ID=CGI_10021124; scaffold610 TRF Tandem_Repeat 445660 445685 52 + . . scaffold610 TRF Tandem_Repeat 448314 448400 115 + . . scaffold610 TRF Tandem_Repeat 448472 448681 240 + . . scaffold610 TRF Tandem_Repeat 448472 448657 219 + . . scaffold610 TRF Tandem_Repeat 448685 448925 168 + . . scaffold610 TRF Tandem_Repeat 450352 450415 128 + . . scaffold610 TRF Tandem_Repeat 452032 452062 62 + . . scaffold610 TRF Tandem_Repeat 454147 454285 110 + . . scaffold610 TRF Tandem_Repeat 454367 454496 91 + . . scaffold610 WUBlastX LINE_L2 456570 456866 40 + . . scaffold610 WUBlastX LINE_CR1-L2 456836 456958 25 + . . scaffold610 TRF Tandem_Repeat 461123 461171 91 + . . scaffold610 GLEAN promoter 469294 470293 0.638494 + . ID=CGI_10021125; scaffold610 GLEAN mRNA 470294 477844 0.638494 + . ID=CGI_10021125; scaffold610 GLEAN mRNA 481722 485834 1 - . ID=CGI_10021126; scaffold610 TRF Tandem_Repeat 483740 483768 58 + . . scaffold610 GLEAN promoter 485235 486234 0.455626 + . ID=CGI_10021127; scaffold610 GLEAN promoter 485835 486834 1 - . ID=CGI_10021126; scaffold610 GLEAN mRNA 486235 495587 0.455626 + . ID=CGI_10021127; scaffold610 TRF Tandem_Repeat 497059 497436 522 + . . scaffold610 GLEAN promoter 501047 502046 0.496714 + . ID=CGI_10021128; scaffold610 GLEAN mRNA 502047 522900 0.496714 + . ID=CGI_10021128; scaffold610 TRF Tandem_Repeat 513311 513360 52 + . . scaffold610 TRF Tandem_Repeat 522208 522351 83 + . . scaffold610 TRF Tandem_Repeat 522217 522351 144 + . . scaffold610 GLEAN promoter 543511 544510 1 + . ID=CGI_10021129; scaffold610 GLEAN mRNA 544511 547998 1 + . ID=CGI_10021129; scaffold610 GLEAN mRNA 561259 570035 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy-Cigr 564051 564464 68 + . . scaffold610 WUBlastX LTR_Gypsy 566828 568198 388 + . . scaffold610 WUBlastX LTR_Gypsy-Cigr 567158 568204 570 + . . scaffold610 WUBlastX LTR_Gypsy 567206 568390 314 + . . scaffold610 WUBlastX LTR_Gypsy-Cigr 568220 568705 39 + . . scaffold610 WUBlastX LTR_Gypsy 568603 569244 105 + . . scaffold610 WUBlastX LTR_Gypsy 568756 569175 125 + . . scaffold610 WUBlastX LTR_Gypsy-Cigr 568894 569202 183 + . . scaffold610 WUBlastX LTR_Gypsy 569223 569300 43 + . . scaffold610 WUBlastX LTR_Gypsy 569223 569360 40 + . . scaffold610 WUBlastX LTR_Gypsy-Cigr 569350 569517 30 + . . scaffold610 WUBlastX LTR_Gypsy 569410 569544 22 + . . scaffold610 GLEAN promoter 570036 571035 0.686247 - . ID=CGI_10021130; scaffold610 WUBlastX LTR_Gypsy 570086 570199 27 + . . scaffold610 WUBlastX LTR_Gypsy 570104 570199 32 + . . scaffold610 GLEAN mRNA 570530 599736 0.974441 - . ID=CGI_10021131; scaffold610 TRF Tandem_Repeat 570976 571021 83 + . . scaffold610 WUBlastX DNA_Merlin 571719 571913 33 + . . scaffold610 WUBlastX DNA_Merlin 571776 572000 43 + . . scaffold610 WUBlastX DNA_Merlin 572154 572672 128 + . . scaffold610 WUBlastX DNA_Merlin 572244 572684 153 + . . scaffold610 TRF Tandem_Repeat 572936 573037 132 + . . scaffold610 WUBlastX LTR_Gypsy 583437 583982 52 - . . scaffold610 WUBlastX LTR_Gypsy 583545 583982 118 - . . scaffold610 WUBlastX LTR_Gypsy 583945 584229 30 - . . scaffold610 WUBlastX LTR_Gypsy 584086 584319 49 - . . scaffold610 WUBlastX LTR_Gypsy 584255 584650 187 - . . scaffold610 WUBlastX LINE_RTE-X 598022 598234 48 - . . scaffold610 WUBlastX LINE_L1 599722 599850 52 - . . scaffold610 GLEAN promoter 599737 600736 0.974441 - . ID=CGI_10021131; scaffold610 WUBlastX LINE_L1 599737 600459 47 - . . scaffold610 WUBlastX LINE_RTE-X 610037 612703 699 - . . scaffold610 WUBlastX LINE_RTE-X 610100 612259 718 - . . scaffold610 WUBlastX LINE_RTE-X 610127 611710 720 - . . scaffold610 WUBlastX LINE_RTE-X 616452 617957 212 - . . scaffold610 WUBlastX LINE_RTE-X 616515 617753 412 - . . scaffold610 TRF Tandem_Repeat 618716 618762 85 + . . scaffold610 TRF Tandem_Repeat 640827 640964 195 + . . scaffold610 TRF Tandem_Repeat 640827 640960 187 + . . scaffold610 TRF Tandem_Repeat 640834 640960 177 + . . scaffold610 TRF Tandem_Repeat 640958 640992 61 + . . scaffold610 TRF Tandem_Repeat 649912 650745 760 + . . scaffold610 TRF Tandem_Repeat 652605 653401 1210 + . . scaffold610 TRF Tandem_Repeat 655992 656664 846 + . . scaffold610 GLEAN mRNA 657088 660673 0.999502 - . ID=CGI_10021132; scaffold610 GLEAN promoter 660674 661673 0.999502 - . ID=CGI_10021132; scaffold610 TRF Tandem_Repeat 660961 661013 106 + . . scaffold610 TRF Tandem_Repeat 661086 661124 60 + . . scaffold610 TRF Tandem_Repeat 661346 661377 64 + . . scaffold610 TRF Tandem_Repeat 661709 661744 72 + . . scaffold610 TRF Tandem_Repeat 662368 662443 136 + . . scaffold610 TRF Tandem_Repeat 662566 662616 66 + . . scaffold610 TRF Tandem_Repeat 662664 662716 106 + . . scaffold610 TRF Tandem_Repeat 662939 664619 2494 + . . scaffold610 TRF Tandem_Repeat 668585 668660 116 + . . scaffold610 TRF Tandem_Repeat 670283 670330 78 + . . scaffold610 GLEAN mRNA 672412 674630 0.558201 - . ID=CGI_10021133; scaffold610 GLEAN promoter 674631 675630 0.558201 - . ID=CGI_10021133; scaffold610 GLEAN mRNA 675738 676433 1 - . ID=CGI_10021134; scaffold610 GLEAN promoter 676434 676522 1 - . ID=CGI_10021134; scaffold612 TRF Tandem_Repeat 2730 2768 78 + . . scaffold612 TRF Tandem_Repeat 8325 8435 183 + . . scaffold612 WUBlastX LINE_RTE-X 13794 14120 24 + . . scaffold612 WUBlastX LINE_RTE-X 13932 14117 76 + . . scaffold612 WUBlastX LINE_RTE-X 14122 14307 37 + . . scaffold612 WUBlastX LINE_RTE-X 14324 14398 32 + . . scaffold612 WUBlastX LINE_RTE-X 14619 14822 34 + . . scaffold612 WUBlastX LINE_RTE-X 14685 14822 35 + . . scaffold612 GLEAN mRNA 15563 15916 0.905921 - . ID=CGI_10009459; scaffold612 GLEAN promoter 15917 16916 0.905921 - . ID=CGI_10009459; scaffold612 WUBlastX DNA_Crypton 16282 17298 223 - . . scaffold612 GLEAN mRNA 17374 17742 0.396629 - . ID=CGI_10009460; scaffold612 GLEAN promoter 17743 18742 0.396629 - . ID=CGI_10009460; scaffold612 WUBlastX DNA_Sola 19549 19938 82 - . . scaffold612 WUBlastX DNA_Sola 29440 29679 85 - . . scaffold612 WUBlastX DNA_Sola 29826 30689 106 - . . scaffold612 WUBlastX DNA_Sola 37372 37443 24 - . . scaffold612 WUBlastX DNA_Sola 38172 38339 57 - . . scaffold612 WUBlastX DNA_Sola 38386 39396 128 - . . scaffold612 WUBlastX DNA_Sola 39317 39589 38 - . . scaffold612 TRF Tandem_Repeat 52189 52233 90 + . . scaffold612 TRF Tandem_Repeat 52341 52399 109 + . . scaffold612 TRF Tandem_Repeat 58538 58851 348 + . . scaffold612 TRF Tandem_Repeat 59405 59533 107 + . . scaffold612 WUBlastX LTR_Gypsy 73508 74518 614 + . . scaffold612 WUBlastX LTR_Gypsy 74515 74802 225 + . . scaffold612 WUBlastX LTR_Gypsy 74521 74877 118 + . . scaffold612 GLEAN mRNA 75288 75994 0.476068 - . ID=CGI_10009461; scaffold612 GLEAN promoter 75995 76994 0.476068 - . ID=CGI_10009461; scaffold612 WUBlastX LTR_Gypsy 76239 76286 20 - . . scaffold612 WUBlastX LTR_Gypsy 76242 76271 20 - . . scaffold612 WUBlastX LTR_Gypsy 76326 76487 35 - . . scaffold612 WUBlastX LTR_Gypsy-Cigr 76374 76532 58 - . . scaffold612 WUBlastX LTR_Gypsy 76520 76609 25 - . . scaffold612 WUBlastX LTR_Gypsy 76520 76582 36 - . . scaffold612 WUBlastX LTR_Gypsy-Cigr 76705 77304 338 - . . scaffold612 WUBlastX LTR_Gypsy 76726 77424 210 - . . scaffold612 WUBlastX LTR_Gypsy 77563 77607 21 - . . scaffold612 WUBlastX LINE_CR1 87970 88035 27 - . . scaffold612 WUBlastX LINE_L2 88016 88303 39 - . . scaffold612 WUBlastX LINE_CR1-L2 88429 89028 196 - . . scaffold612 WUBlastX LINE_CR1-L2 89012 89278 152 - . . scaffold612 WUBlastX LINE_CR1 89129 89314 42 - . . scaffold612 WUBlastX LINE_L2 89751 89807 20 - . . scaffold612 WUBlastX LINE_L2 90041 90181 28 - . . scaffold612 GLEAN mRNA 97858 98469 0.449004 - . ID=CGI_10009462; scaffold612 WUBlastX LTR_Gypsy 98215 98580 52 - . . scaffold612 WUBlastX LTR_Gypsy 98419 98613 53 - . . scaffold612 GLEAN promoter 98470 99469 0.449004 - . ID=CGI_10009462; scaffold612 TRF Tandem_Repeat 100836 100900 105 + . . scaffold612 TRF Tandem_Repeat 106031 106101 142 + . . scaffold612 WUBlastX LINE_CR1 108553 109293 525 + . . scaffold612 GLEAN mRNA 114066 118533 1 - . ID=CGI_10009463; scaffold612 TRF Tandem_Repeat 115029 115063 70 + . . scaffold612 GLEAN promoter 118534 119533 1 - . ID=CGI_10009463; scaffold612 GLEAN promoter 124228 125227 0.999372 + . ID=CGI_10009464; scaffold612 GLEAN mRNA 125228 125665 0.999372 + . ID=CGI_10009464; scaffold612 TRF Tandem_Repeat 127114 127158 90 + . . scaffold612 WUBlastX LINE_L1-Tx1 128695 129264 138 + . . scaffold612 WUBlastX LINE_L1-Tx1 128824 129201 143 + . . scaffold612 TRF Tandem_Repeat 130529 130603 141 + . . scaffold612 GLEAN promoter 130781 131780 0.691363 + . ID=CGI_10009465; scaffold612 GLEAN mRNA 131781 136549 0.691363 + . ID=CGI_10009465; scaffold612 TRF Tandem_Repeat 136017 136066 100 + . . scaffold612 GLEAN mRNA 138257 142710 1 - . ID=CGI_10009466; scaffold612 TRF Tandem_Repeat 141055 141080 52 + . . scaffold612 GLEAN promoter 142711 143710 1 - . ID=CGI_10009466; scaffold612 GLEAN promoter 143081 144080 1 + . ID=CGI_10009467; scaffold612 GLEAN mRNA 144081 154534 1 + . ID=CGI_10009467; scaffold612 WUBlastX LINE_RTE-X 151283 151408 43 - . . scaffold612 GLEAN promoter 155227 156226 1 + . ID=CGI_10009468; scaffold612 GLEAN mRNA 156227 158195 1 + . ID=CGI_10009468; scaffold612 GLEAN mRNA 159750 165445 0.991027 - . ID=CGI_10009469; scaffold612 GLEAN promoter 165446 166445 0.991027 - . ID=CGI_10009469; scaffold612 GLEAN promoter 166484 167483 0.4062 + . ID=CGI_10009470; scaffold612 GLEAN mRNA 167484 178165 0.4062 + . ID=CGI_10009470; scaffold612 GLEAN promoter 180646 181645 1 + . ID=CGI_10009471; scaffold612 GLEAN mRNA 181646 196466 1 + . ID=CGI_10009471; scaffold612 GLEAN promoter 199374 200373 1 + . ID=CGI_10009472; scaffold612 GLEAN mRNA 200374 202467 1 + . ID=CGI_10009472; scaffold612 TRF Tandem_Repeat 202855 203011 137 + . . scaffold612 TRF Tandem_Repeat 202958 203147 81 + . . scaffold612 TRF Tandem_Repeat 203091 203160 70 + . . scaffold612 TRF Tandem_Repeat 206522 206583 124 + . . scaffold612 GLEAN mRNA 208179 214427 0.814159 - . ID=CGI_10009473; scaffold612 TRF Tandem_Repeat 209501 209600 173 + . . scaffold612 GLEAN promoter 214428 215427 0.814159 - . ID=CGI_10009473; scaffold612 GLEAN promoter 229022 230021 1 + . ID=CGI_10009474; scaffold612 GLEAN mRNA 230022 231282 1 + . ID=CGI_10009474; scaffold613 WUBlastX LTR_Gypsy 3208 3402 35 - . . scaffold613 WUBlastX LTR_Gypsy 3244 3399 54 - . . scaffold613 WUBlastX LTR_Gypsy 3407 3523 70 - . . scaffold613 WUBlastX LTR_Gypsy 11763 11990 86 + . . scaffold613 WUBlastX LTR_Gypsy 11775 11933 139 + . . scaffold613 WUBlastX LTR_Gypsy 11775 11963 109 + . . scaffold613 WUBlastX LTR_Gypsy 15618 15839 177 + . . scaffold613 WUBlastX LTR_Gypsy 15654 15917 111 + . . scaffold613 WUBlastX LTR_Gypsy 15660 15839 187 + . . scaffold613 WUBlastX LTR_Gypsy 15889 16188 230 + . . scaffold613 WUBlastX LTR_Gypsy 16641 17792 518 + . . scaffold613 WUBlastX LTR_Gypsy 17088 17792 540 + . . scaffold613 WUBlastX LTR_Gypsy 17142 17930 254 + . . scaffold613 WUBlastX LTR_Gypsy 17794 18288 205 + . . scaffold613 WUBlastX LTR_Gypsy 18267 18458 108 + . . scaffold613 TRF Tandem_Repeat 21646 21674 58 + . . scaffold613 TRF Tandem_Repeat 22526 22573 96 + . . scaffold613 TRF Tandem_Repeat 26099 26215 78 + . . scaffold613 TRF Tandem_Repeat 26783 26888 52 + . . scaffold613 WUBlastX LINE_RTE-BovB 91829 92005 60 + . . scaffold613 WUBlastX LINE_RTE-BovB 92469 92645 60 + . . scaffold613 WUBlastX LTR_Gypsy 93391 93888 81 - . . scaffold613 WUBlastX LTR_Gypsy 93475 93876 176 - . . scaffold613 WUBlastX LTR_Gypsy 93851 95452 1378 - . . scaffold613 WUBlastX LTR_Gypsy 95458 96240 319 - . . scaffold613 WUBlastX LTR_Gypsy 96285 96752 135 - . . scaffold613 WUBlastX LTR_Gypsy 96357 96857 388 - . . scaffold614 TRF Tandem_Repeat 18044 18208 161 + . . scaffold614 GLEAN mRNA 18728 22610 0.999989 - . ID=CGI_10016255; scaffold614 GLEAN promoter 22611 23610 0.999989 - . ID=CGI_10016255; scaffold614 TRF Tandem_Repeat 23784 24018 398 + . . scaffold614 TRF Tandem_Repeat 24132 24181 100 + . . scaffold614 TRF Tandem_Repeat 25909 25949 82 + . . scaffold614 TRF Tandem_Repeat 34293 34393 148 + . . scaffold614 TRF Tandem_Repeat 34293 34393 161 + . . scaffold614 TRF Tandem_Repeat 35671 37495 2326 + . . scaffold614 TRF Tandem_Repeat 37916 38075 193 + . . scaffold614 TRF Tandem_Repeat 37918 38075 188 + . . scaffold614 TRF Tandem_Repeat 37993 38074 137 + . . scaffold614 GLEAN mRNA 44467 45606 0.733495 - . ID=CGI_10016256; scaffold614 GLEAN promoter 45607 46606 0.733495 - . ID=CGI_10016256; scaffold614 TRF Tandem_Repeat 47388 47487 103 + . . scaffold614 TRF Tandem_Repeat 48750 48877 220 + . . scaffold614 WUBlastX DNA_IS4EU 50000 50152 72 + . . scaffold614 WUBlastX DNA_IS4EU 50012 50140 89 + . . scaffold614 WUBlastX DNA_IS4EU 50642 51709 297 + . . scaffold614 WUBlastX DNA_IS4EU 52430 53242 591 - . . scaffold614 WUBlastX DNA_Crypton 60779 61303 95 - . . scaffold614 GLEAN mRNA 62783 77866 0.592442 - . ID=CGI_10016257; scaffold614 TRF Tandem_Repeat 63639 63727 169 + . . scaffold614 GLEAN promoter 77867 78866 0.592442 - . ID=CGI_10016257; scaffold614 TRF Tandem_Repeat 80573 80947 391 + . . scaffold614 TRF Tandem_Repeat 80580 80859 440 + . . scaffold614 GLEAN promoter 81510 82509 1 + . ID=CGI_10016258; scaffold614 GLEAN mRNA 82510 93886 1 + . ID=CGI_10016258; scaffold614 TRF Tandem_Repeat 85128 85162 52 + . . scaffold614 TRF Tandem_Repeat 88087 88182 147 + . . scaffold614 TRF Tandem_Repeat 88116 88169 66 + . . scaffold614 TRF Tandem_Repeat 89285 89320 54 + . . scaffold614 TRF Tandem_Repeat 89405 89463 118 + . . scaffold614 TRF Tandem_Repeat 91737 92065 462 + . . scaffold614 GLEAN mRNA 96489 98569 0.734554 - . ID=CGI_10016259; scaffold614 GLEAN promoter 98570 99569 0.734554 - . ID=CGI_10016259; scaffold614 GLEAN promoter 117321 118320 0.999283 + . ID=CGI_10016260; scaffold614 GLEAN mRNA 118321 123723 0.999283 + . ID=CGI_10016260; scaffold614 TRF Tandem_Repeat 121041 121081 73 + . . scaffold614 GLEAN promoter 123879 124878 0.999476 + . ID=CGI_10016261; scaffold614 GLEAN mRNA 124879 135222 0.999476 + . ID=CGI_10016261; scaffold614 TRF Tandem_Repeat 131251 131309 50 + . . scaffold614 TRF Tandem_Repeat 133080 133833 1204 + . . scaffold614 TRF Tandem_Repeat 146323 146356 50 + . . scaffold614 GLEAN promoter 151172 152171 1 + . ID=CGI_10016262; scaffold614 TRF Tandem_Repeat 151961 152017 105 + . . scaffold614 GLEAN mRNA 152172 155057 1 + . ID=CGI_10016262; scaffold614 WUBlastX LINE_Penelope 157334 158335 361 - . . scaffold614 WUBlastX LTR_Pao 159132 159260 36 - . . scaffold614 WUBlastX LTR_Pao 159162 159287 37 - . . scaffold614 WUBlastX LTR_Pao 159162 159260 49 - . . scaffold614 WUBlastX LTR_Pao 160211 164245 2114 - . . scaffold614 WUBlastX LTR_Pao 164241 164963 300 - . . scaffold614 WUBlastX LTR_Pao 164334 165338 238 - . . scaffold614 GLEAN promoter 190646 191645 0.772957 + . ID=CGI_10016263; scaffold614 GLEAN mRNA 191646 225639 0.772957 + . ID=CGI_10016263; scaffold614 TRF Tandem_Repeat 204414 204455 50 + . . scaffold614 TRF Tandem_Repeat 215982 216019 67 + . . scaffold614 TRF Tandem_Repeat 222423 222473 102 + . . scaffold614 GLEAN promoter 225353 226352 1 + . ID=CGI_10016264; scaffold614 GLEAN mRNA 226353 228686 1 + . ID=CGI_10016264; scaffold614 WUBlastX DNA_TcMar-Tc1 232841 233431 170 + . . scaffold614 WUBlastX DNA_TcMar-Tc1 233436 233492 22 + . . scaffold614 WUBlastX DNA_TcMar-Tc1 233448 233489 31 + . . scaffold614 WUBlastX DNA_TcMar-Tc1 233511 233654 29 + . . scaffold614 WUBlastX DNA_TcMar-Tc1 233589 233654 42 + . . scaffold614 GLEAN mRNA 234753 258996 0.342182 - . ID=CGI_10016265; scaffold614 TRF Tandem_Repeat 240687 240716 51 + . . scaffold614 TRF Tandem_Repeat 243364 243424 95 + . . scaffold614 TRF Tandem_Repeat 243364 243427 83 + . . scaffold614 TRF Tandem_Repeat 256114 256160 94 + . . scaffold614 GLEAN promoter 258997 259996 0.342182 - . ID=CGI_10016265; scaffold614 WUBlastX LINE_RTE-X 259301 259381 29 + . . scaffold614 WUBlastX LINE_RTE-X 259375 260286 136 + . . scaffold614 GLEAN mRNA 262077 270279 1 - . ID=CGI_10016266; scaffold614 TRF Tandem_Repeat 262476 262513 51 + . . scaffold614 GLEAN promoter 270280 271279 1 - . ID=CGI_10016266; scaffold614 GLEAN mRNA 270512 280098 0.989355 - . ID=CGI_10016267; scaffold614 GLEAN promoter 280099 281098 0.989355 - . ID=CGI_10016267; scaffold614 TRF Tandem_Repeat 290704 290771 136 + . . scaffold614 TRF Tandem_Repeat 290805 290864 120 + . . scaffold614 WUBlastX LTR_Pao 291688 292419 22 + . . scaffold614 WUBlastX LTR_Pao 292033 292437 23 + . . scaffold614 WUBlastX LTR_Pao 293186 294421 169 + . . scaffold614 WUBlastX LTR_Pao 293411 294412 297 + . . scaffold614 WUBlastX LTR_Pao 293699 294424 632 + . . scaffold614 WUBlastX LINE_CR1-L2 296626 297246 177 + . . scaffold614 WUBlastX LINE_L2 296752 297243 199 + . . scaffold614 WUBlastX LINE_L2 297252 297902 84 + . . scaffold614 WUBlastX LINE_L2 297827 298402 91 + . . scaffold614 WUBlastX LINE_CR1-L2 298323 299138 91 + . . scaffold614 WUBlastX LINE_L2 298637 299644 209 + . . scaffold614 WUBlastX LINE_CR1-L2 304091 304177 21 - . . scaffold614 WUBlastX LINE_CR1-L2 304449 304718 82 - . . scaffold614 WUBlastX LINE_CR1-L2 304706 305152 44 - . . scaffold614 WUBlastX LINE_CR1-L2 304706 304888 56 - . . scaffold614 TRF Tandem_Repeat 306556 306603 60 + . . scaffold614 WUBlastX DNA_Harbinger 310698 310835 48 + . . scaffold614 WUBlastX DNA_Harbinger 310814 311104 165 + . . scaffold614 WUBlastX DNA_Harbinger 311310 311591 112 - . . scaffold614 WUBlastX DNA_Harbinger 311719 311991 99 - . . scaffold614 WUBlastX DNA_Harbinger 311779 312066 138 - . . scaffold614 TRF Tandem_Repeat 314788 314881 80 + . . scaffold614 TRF Tandem_Repeat 314885 315029 132 + . . scaffold614 TRF Tandem_Repeat 315692 315776 75 + . . scaffold614 GLEAN mRNA 318965 331574 1 - . ID=CGI_10016268; scaffold614 TRF Tandem_Repeat 329899 329945 78 + . . scaffold614 GLEAN promoter 331575 332574 1 - . ID=CGI_10016268; scaffold614 WUBlastX DNA_hAT-Tip100 333150 333326 52 + . . scaffold614 WUBlastX DNA_Sola 337023 337193 63 - . . scaffold614 WUBlastX DNA_Sola 337319 338683 391 - . . scaffold614 WUBlastX DNA_Sola 338315 338800 74 - . . scaffold614 WUBlastX DNA_Sola 338342 338953 37 - . . scaffold614 GLEAN mRNA 339324 355515 0.640385 - . ID=CGI_10016269; scaffold614 WUBlastX DNA_Harbinger 343116 343337 89 - . . scaffold614 TRF Tandem_Repeat 346016 346074 118 + . . scaffold614 GLEAN promoter 355516 356515 0.640385 - . ID=CGI_10016269; scaffold614 TRF Tandem_Repeat 357223 357298 152 + . . scaffold614 TRF Tandem_Repeat 360609 360660 68 + . . scaffold614 TRF Tandem_Repeat 362689 362714 52 + . . scaffold614 TRF Tandem_Repeat 365029 365104 152 + . . scaffold614 GLEAN promoter 365319 366318 0.606034 + . ID=CGI_10016270; scaffold614 GLEAN mRNA 366319 376762 0.606034 + . ID=CGI_10016270; scaffold614 GLEAN promoter 378456 379455 0.999949 + . ID=CGI_10016271; scaffold614 GLEAN mRNA 379456 395045 0.999949 + . ID=CGI_10016271; scaffold614 TRF Tandem_Repeat 388091 388155 130 + . . scaffold614 TRF Tandem_Repeat 391114 391180 80 + . . scaffold614 TRF Tandem_Repeat 393638 393684 85 + . . scaffold614 TRF Tandem_Repeat 393873 393897 50 + . . scaffold614 TRF Tandem_Repeat 393895 393924 60 + . . scaffold614 TRF Tandem_Repeat 394419 394485 80 + . . scaffold614 TRF Tandem_Repeat 394776 394824 62 + . . scaffold614 GLEAN promoter 401329 402328 0.575241 + . ID=CGI_10016272; scaffold614 GLEAN mRNA 402329 405352 0.575241 + . ID=CGI_10016272; scaffold614 GLEAN mRNA 405110 405295 0.423707 - . ID=CGI_10016273; scaffold614 GLEAN promoter 405296 406295 0.423707 - . ID=CGI_10016273; scaffold614 GLEAN mRNA 407471 409904 0.998604 - . ID=CGI_10016274; scaffold614 GLEAN promoter 409496 410495 0.998637 + . ID=CGI_10016275; scaffold614 GLEAN promoter 409905 410904 0.998604 - . ID=CGI_10016274; scaffold614 GLEAN mRNA 410496 411776 0.998637 + . ID=CGI_10016275; scaffold614 GLEAN mRNA 412794 419081 0.999675 - . ID=CGI_10016276; scaffold614 TRF Tandem_Repeat 415862 415899 76 + . . scaffold614 GLEAN promoter 419082 420081 0.999675 - . ID=CGI_10016276; scaffold614 TRF Tandem_Repeat 420510 420565 112 + . . scaffold614 WUBlastX LINE_RTE-X 438211 438627 52 - . . scaffold614 WUBlastX LINE_Jockey 438319 438711 71 - . . scaffold614 WUBlastX LINE_I-Nimb 438390 439298 82 - . . scaffold614 WUBlastX LINE_RTE-X 438549 439298 167 - . . scaffold614 WUBlastX LINE_CR1-L2 438678 439298 243 - . . scaffold614 WUBlastX LINE_CR1 438681 439433 136 - . . scaffold614 WUBlastX LTR_ERV1 442247 443101 130 - . . scaffold614 WUBlastX LTR_Gypsy 442376 443275 710 - . . scaffold614 WUBlastX LTR_Gypsy 443258 443959 550 - . . scaffold614 WUBlastX LTR_Gypsy 443279 444310 65 - . . scaffold614 WUBlastX LTR_Gypsy 446284 446631 21 - . . scaffold614 WUBlastX LTR_Gypsy 446416 446730 165 - . . scaffold614 WUBlastX LTR_Gypsy 446736 447269 459 - . . scaffold614 GLEAN promoter 447566 448565 0.999999 + . ID=CGI_10016277; scaffold614 TRF Tandem_Repeat 448178 448233 112 + . . scaffold614 GLEAN mRNA 448566 453098 0.999999 + . ID=CGI_10016277; scaffold614 WUBlastX LINE_RTE-X 454300 454371 25 + . . scaffold614 WUBlastX LINE_RTE-X 454392 455174 405 + . . scaffold615 GLEAN mRNA 1118 7049 0.999596 - . ID=CGI_10003746; scaffold615 GLEAN promoter 7050 8049 0.999596 - . ID=CGI_10003746; scaffold615 TRF Tandem_Repeat 12510 12541 64 + . . scaffold615 TRF Tandem_Repeat 12910 12949 71 + . . scaffold615 WUBlastX LINE_RTE-X 15757 15924 45 - . . scaffold615 WUBlastX LINE_RTE-X 15891 16247 60 - . . scaffold615 WUBlastX LINE_RTE-X 15921 16220 73 - . . scaffold615 WUBlastX LINE_RTE-X 15963 16304 36 - . . scaffold615 WUBlastX LINE_RTE-X 16301 17068 315 - . . scaffold615 WUBlastX LINE_RTE-X 17052 17657 359 - . . scaffold615 WUBlastX LINE_CR1 17127 17765 150 - . . scaffold615 WUBlastX LINE_RTE-X 17780 18253 48 - . . scaffold615 WUBlastX LINE_RTE-X 18280 18528 26 - . . scaffold615 WUBlastX LINE_RTE-X 18319 18546 56 - . . scaffold615 WUBlastX LINE_RTE-X 18554 18682 46 - . . scaffold615 WUBlastX LINE_L1 18815 18937 38 - . . scaffold615 WUBlastX LINE_L1 18940 19320 163 - . . scaffold615 WUBlastX LINE_L2 18943 19419 144 - . . scaffold615 GLEAN mRNA 20766 25234 0.999351 - . ID=CGI_10003747; scaffold615 GLEAN promoter 25235 26234 0.999351 - . ID=CGI_10003747; scaffold615 TRF Tandem_Repeat 28288 28333 92 + . . scaffold615 GLEAN promoter 32674 33673 0.808068 + . ID=CGI_10003748; scaffold615 WUBlastX LINE_CR1-L2 32707 33024 81 + . . scaffold615 GLEAN mRNA 33674 44255 0.808068 + . ID=CGI_10003748; scaffold615 TRF Tandem_Repeat 45957 45998 84 + . . scaffold615 TRF Tandem_Repeat 47975 48047 92 + . . scaffold615 TRF Tandem_Repeat 47976 48018 50 + . . scaffold615 TRF Tandem_Repeat 47984 48047 65 + . . scaffold615 TRF Tandem_Repeat 48755 48784 51 + . . scaffold616 TRF Tandem_Repeat 2689 2724 54 + . . scaffold616 GLEAN mRNA 2988 39761 0.690684 - . ID=CGI_10015383; scaffold616 TRF Tandem_Repeat 24207 24238 64 + . . scaffold616 WUBlastX LINE_RTE-X 24830 25156 106 - . . scaffold616 WUBlastX LINE_RTE-X 25182 27803 821 - . . scaffold616 TRF Tandem_Repeat 34887 34930 88 + . . scaffold616 GLEAN promoter 39762 40761 0.690684 - . ID=CGI_10015383; scaffold616 TRF Tandem_Repeat 40680 40736 114 + . . scaffold616 TRF Tandem_Repeat 42401 42450 100 + . . scaffold616 GLEAN promoter 52221 53220 1 + . ID=CGI_10015384; scaffold616 GLEAN mRNA 53221 63262 1 + . ID=CGI_10015384; scaffold616 TRF Tandem_Repeat 58197 58244 55 + . . scaffold616 GLEAN mRNA 63267 67583 0.456904 - . ID=CGI_10015385; scaffold616 GLEAN promoter 67584 68583 0.456904 - . ID=CGI_10015385; scaffold616 GLEAN mRNA 69829 103493 0.9915 - . ID=CGI_10015386; scaffold616 GLEAN promoter 75853 76852 1 + . ID=CGI_10015387; scaffold616 GLEAN mRNA 76853 78182 1 + . ID=CGI_10015387; scaffold616 TRF Tandem_Repeat 83266 84049 1127 + . . scaffold616 TRF Tandem_Repeat 83266 84049 986 + . . scaffold616 TRF Tandem_Repeat 83267 84437 1030 + . . scaffold616 TRF Tandem_Repeat 84138 84437 215 + . . scaffold616 TRF Tandem_Repeat 84151 84456 464 + . . scaffold616 GLEAN promoter 84828 85827 0.765787 + . ID=CGI_10015388; scaffold616 GLEAN mRNA 85828 107118 0.765787 + . ID=CGI_10015388; scaffold616 TRF Tandem_Repeat 100363 100746 430 + . . scaffold616 GLEAN promoter 103494 104493 0.9915 - . ID=CGI_10015386; scaffold616 TRF Tandem_Repeat 107881 107938 82 + . . scaffold616 TRF Tandem_Repeat 107881 107926 56 + . . scaffold616 TRF Tandem_Repeat 107881 107938 82 + . . scaffold616 TRF Tandem_Repeat 114020 114065 57 + . . scaffold616 TRF Tandem_Repeat 114021 114062 50 + . . scaffold616 GLEAN promoter 125038 126037 1 + . ID=CGI_10015389; scaffold616 GLEAN mRNA 126038 136791 1 + . ID=CGI_10015389; scaffold616 WUBlastX LINE_L1-Tx1 128071 128757 196 + . . scaffold616 WUBlastX LINE_L1-Tx1 128107 128604 206 + . . scaffold616 WUBlastX LINE_L1-Tx1 128140 128868 81 + . . scaffold616 TRF Tandem_Repeat 133923 134026 100 + . . scaffold616 TRF Tandem_Repeat 163952 164144 189 + . . scaffold616 TRF Tandem_Repeat 164689 165031 391 + . . scaffold616 TRF Tandem_Repeat 164689 164988 418 + . . scaffold616 TRF Tandem_Repeat 168328 168394 62 + . . scaffold616 TRF Tandem_Repeat 168706 169503 1229 + . . scaffold616 GLEAN mRNA 172916 174276 0.812897 - . ID=CGI_10015390; scaffold616 GLEAN promoter 174277 175276 0.812897 - . ID=CGI_10015390; scaffold616 TRF Tandem_Repeat 177123 178861 2147 + . . scaffold616 TRF Tandem_Repeat 180265 180367 152 + . . scaffold616 GLEAN mRNA 180525 181457 0.90798 - . ID=CGI_10015391; scaffold616 GLEAN promoter 181458 182457 0.90798 - . ID=CGI_10015391; scaffold616 GLEAN promoter 183621 184620 0.702385 + . ID=CGI_10015392; scaffold616 TRF Tandem_Repeat 183958 184015 109 + . . scaffold616 GLEAN mRNA 184621 191434 0.702385 + . ID=CGI_10015392; scaffold616 TRF Tandem_Repeat 185953 186439 929 + . . scaffold616 TRF Tandem_Repeat 185977 186091 66 + . . scaffold616 GLEAN mRNA 192467 199648 0.996732 - . ID=CGI_10015393; scaffold616 TRF Tandem_Repeat 197041 197082 84 + . . scaffold616 GLEAN promoter 199649 200648 0.996732 - . ID=CGI_10015393; scaffold616 TRF Tandem_Repeat 202991 203015 50 + . . scaffold616 TRF Tandem_Repeat 204528 204577 64 + . . scaffold616 TRF Tandem_Repeat 205018 205049 55 + . . scaffold616 TRF Tandem_Repeat 205923 205975 97 + . . scaffold616 TRF Tandem_Repeat 206261 206309 89 + . . scaffold616 GLEAN promoter 208379 209378 1 + . ID=CGI_10015394; scaffold616 TRF Tandem_Repeat 208973 209092 213 + . . scaffold616 GLEAN mRNA 209379 213204 1 + . ID=CGI_10015394; scaffold616 TRF Tandem_Repeat 210551 210600 100 + . . scaffold616 GLEAN promoter 212933 213932 0.577516 + . ID=CGI_10015395; scaffold616 GLEAN mRNA 213933 220765 0.577516 + . ID=CGI_10015395; scaffold616 TRF Tandem_Repeat 214392 214590 317 + . . scaffold616 TRF Tandem_Repeat 214469 214569 85 + . . scaffold616 GLEAN mRNA 224635 231086 0.999709 - . ID=CGI_10015396; scaffold616 TRF Tandem_Repeat 225491 226490 1346 + . . scaffold616 TRF Tandem_Repeat 227888 228311 683 + . . scaffold616 TRF Tandem_Repeat 229089 229292 241 + . . scaffold616 TRF Tandem_Repeat 230308 230345 67 + . . scaffold616 GLEAN promoter 231087 232086 0.999709 - . ID=CGI_10015396; scaffold616 TRF Tandem_Repeat 231233 231305 146 + . . scaffold616 GLEAN mRNA 235595 244727 0.999676 - . ID=CGI_10015397; scaffold616 TRF Tandem_Repeat 237259 238285 1414 + . . scaffold616 TRF Tandem_Repeat 240199 240248 100 + . . scaffold616 TRF Tandem_Repeat 240410 242267 2791 + . . scaffold616 TRF Tandem_Repeat 243228 243408 263 + . . scaffold616 GLEAN promoter 244728 245727 0.999676 - . ID=CGI_10015397; scaffold616 TRF Tandem_Repeat 245312 245340 58 + . . scaffold616 GLEAN mRNA 246762 249808 0.999676 - . ID=CGI_10015398; scaffold616 TRF Tandem_Repeat 247004 247107 144 + . . scaffold616 TRF Tandem_Repeat 247004 247119 124 + . . scaffold616 TRF Tandem_Repeat 247021 247119 107 + . . scaffold616 TRF Tandem_Repeat 247021 247115 145 + . . scaffold616 TRF Tandem_Repeat 248399 248673 442 + . . scaffold616 GLEAN promoter 249809 250808 0.999676 - . ID=CGI_10015398; scaffold616 TRF Tandem_Repeat 253258 253329 144 + . . scaffold616 GLEAN mRNA 258958 274025 0.482292 - . ID=CGI_10015400; scaffold616 TRF Tandem_Repeat 266720 266773 108 + . . scaffold616 TRF Tandem_Repeat 269925 269976 104 + . . scaffold616 GLEAN promoter 274026 275025 0.482292 - . ID=CGI_10015400; scaffold616 GLEAN mRNA 278468 304529 0.291668 - . ID=CGI_10015401; scaffold616 TRF Tandem_Repeat 303202 303254 99 + . . scaffold616 GLEAN promoter 303972 304971 1 + . ID=CGI_10015402; scaffold616 GLEAN promoter 304530 305529 0.291668 - . ID=CGI_10015401; scaffold616 GLEAN mRNA 304972 309159 1 + . ID=CGI_10015402; scaffold616 GLEAN mRNA 306388 329498 0.842956 - . ID=CGI_10015403; scaffold616 TRF Tandem_Repeat 308943 308999 78 + . . scaffold616 TRF Tandem_Repeat 311980 312105 216 + . . scaffold616 TRF Tandem_Repeat 313313 313484 214 + . . scaffold616 WUBlastX LINE_RTE-BovB 314416 315192 190 + . . scaffold616 WUBlastX LINE_RTE-BovB 314635 315513 338 + . . scaffold616 WUBlastX LINE_RTE-BovB 314635 316053 309 + . . scaffold616 TRF Tandem_Repeat 316097 316154 116 + . . scaffold616 WUBlastX LINE_RTE-BovB 316629 316673 30 + . . scaffold616 WUBlastX LINE_RTE-BovB 316661 317218 422 + . . scaffold616 WUBlastX LINE_RTE-BovB 317263 317913 309 + . . scaffold616 TRF Tandem_Repeat 320863 320939 129 + . . scaffold616 TRF Tandem_Repeat 325588 325633 65 + . . scaffold616 TRF Tandem_Repeat 325671 325716 92 + . . scaffold616 GLEAN promoter 329499 330498 0.842956 - . ID=CGI_10015403; scaffold616 GLEAN mRNA 330280 337589 0.466499 - . ID=CGI_10015404; scaffold616 TRF Tandem_Repeat 337398 337469 90 + . . scaffold616 TRF Tandem_Repeat 337401 337469 120 + . . scaffold616 GLEAN promoter 337590 338589 0.466499 - . ID=CGI_10015404; scaffold616 TRF Tandem_Repeat 337667 337720 90 + . . scaffold616 GLEAN mRNA 337868 342171 0.471254 - . ID=CGI_10015405; scaffold616 GLEAN promoter 342172 343171 0.471254 - . ID=CGI_10015405; scaffold616 GLEAN mRNA 347615 348868 0.999064 - . ID=CGI_10015406; scaffold616 GLEAN promoter 348869 349868 0.999064 - . ID=CGI_10015406; scaffold616 GLEAN promoter 349715 350714 0.74611 + . ID=CGI_10015407; scaffold616 TRF Tandem_Repeat 350065 350094 60 + . . scaffold616 GLEAN mRNA 350715 381796 0.74611 + . ID=CGI_10015407; scaffold616 TRF Tandem_Repeat 356246 356278 66 + . . scaffold616 TRF Tandem_Repeat 356827 356889 126 + . . scaffold616 TRF Tandem_Repeat 390872 390915 88 + . . scaffold616 WUBlastX LINE_L1-Tx1 395578 396546 143 - . . scaffold616 WUBlastX LINE_L1-Tx1 396552 399353 1739 - . . scaffold616 WUBlastX LINE_L2 399689 399937 37 - . . scaffold616 WUBlastX LINE_L1 399727 400320 56 - . . scaffold616 WUBlastX LINE_L2 399868 400341 94 - . . scaffold616 WUBlastX LINE_L1 399868 400470 56 - . . scaffold616 WUBlastX LINE_L2 399880 400272 100 - . . scaffold616 WUBlastX LINE_Penelope 401239 401475 39 + . . scaffold616 WUBlastX LINE_Penelope 401326 401475 49 + . . scaffold616 WUBlastX LINE_Penelope 401433 401651 48 + . . scaffold616 WUBlastX DNA_PiggyBac 403032 403283 93 - . . scaffold616 WUBlastX DNA_PiggyBac 405223 405675 128 - . . scaffold616 WUBlastX DNA_PiggyBac 405307 405705 180 - . . scaffold616 GLEAN mRNA 405918 425935 0.924853 - . ID=CGI_10015408; scaffold616 WUBlastX DNA_PiggyBac 407455 407955 117 - . . scaffold616 WUBlastX DNA_PiggyBac 407479 407826 181 - . . scaffold616 TRF Tandem_Repeat 420001 420063 81 + . . scaffold616 GLEAN promoter 425936 426935 0.924853 - . ID=CGI_10015408; scaffold617 WUBlastX DNA_Maverick 2434 2589 38 + . . scaffold617 WUBlastX DNA_Maverick 3074 3145 55 + . . scaffold617 WUBlastX DNA_Maverick 3190 3342 78 + . . scaffold617 TRF Tandem_Repeat 38866 39649 840 + . . scaffold617 WUBlastX DNA_TcMar-Fot1 47263 47838 134 - . . scaffold617 WUBlastX DNA_Academ 48688 48864 61 - . . scaffold617 TRF Tandem_Repeat 54154 54189 54 + . . scaffold617 WUBlastX LTR_DIRS 60599 60787 33 - . . scaffold617 WUBlastX LTR_DIRS 60950 61363 43 - . . scaffold617 WUBlastX LTR_DIRS 61770 62441 72 - . . scaffold617 WUBlastX LTR_DIRS 62118 62441 74 - . . scaffold617 WUBlastX LTR_DIRS 62124 62525 46 - . . scaffold617 WUBlastX LTR_DIRS 62519 62764 72 - . . scaffold617 WUBlastX LTR_DIRS 62621 62794 61 - . . scaffold617 GLEAN mRNA 74074 75150 0.593383 - . ID=CGI_10012721; scaffold617 GLEAN promoter 75151 76150 0.593383 - . ID=CGI_10012721; scaffold617 TRF Tandem_Repeat 91946 92159 160 + . . scaffold617 GLEAN promoter 103060 104059 1 + . ID=CGI_10012722; scaffold617 GLEAN mRNA 104060 105003 1 + . ID=CGI_10012722; scaffold617 GLEAN mRNA 115032 115994 0.999999 - . ID=CGI_10012723; scaffold617 WUBlastX LINE_RTE-X 115059 116297 227 - . . scaffold617 WUBlastX LINE_RTE-X 115143 116162 239 - . . scaffold617 GLEAN promoter 115995 116994 0.999999 - . ID=CGI_10012723; scaffold617 WUBlastX DNA_Academ 120074 121189 429 + . . scaffold617 GLEAN promoter 120899 121898 0.866433 + . ID=CGI_10012724; scaffold617 WUBlastX DNA_Academ 121215 122126 482 + . . scaffold617 GLEAN mRNA 121899 122204 0.866433 + . ID=CGI_10012724; scaffold617 GLEAN mRNA 125086 132906 0.990104 - . ID=CGI_10012725; scaffold617 WUBlastX DNA_hAT-Ac 127228 127299 33 - . . scaffold617 WUBlastX DNA_hAT 128440 128769 69 - . . scaffold617 GLEAN promoter 132907 133906 0.990104 - . ID=CGI_10012725; scaffold617 TRF Tandem_Repeat 137885 137934 100 + . . scaffold617 GLEAN promoter 139145 140144 0.999665 + . ID=CGI_10012726; scaffold617 GLEAN mRNA 140145 142212 0.999665 + . ID=CGI_10012726; scaffold617 GLEAN mRNA 144563 159841 0.650568 - . ID=CGI_10012727; scaffold617 TRF Tandem_Repeat 149218 149305 104 + . . scaffold617 TRF Tandem_Repeat 149697 149886 227 + . . scaffold617 GLEAN promoter 149749 150748 0.937596 + . ID=CGI_10012728; scaffold617 TRF Tandem_Repeat 149971 150057 88 + . . scaffold617 TRF Tandem_Repeat 150131 150312 91 + . . scaffold617 TRF Tandem_Repeat 150328 150541 205 + . . scaffold617 GLEAN mRNA 150749 155627 0.937596 + . ID=CGI_10012728; scaffold617 GLEAN promoter 159842 160841 0.650568 - . ID=CGI_10012727; scaffold617 GLEAN mRNA 159998 186043 0.84734 - . ID=CGI_10012729; scaffold617 TRF Tandem_Repeat 179317 179359 54 + . . scaffold617 TRF Tandem_Repeat 183904 183935 55 + . . scaffold617 GLEAN promoter 186044 187043 0.84734 - . ID=CGI_10012729; scaffold617 GLEAN mRNA 187780 189244 0.988332 - . ID=CGI_10012730; scaffold617 GLEAN promoter 189245 190244 0.988332 - . ID=CGI_10012730; scaffold617 GLEAN mRNA 189445 197108 0.995672 - . ID=CGI_10012731; scaffold617 GLEAN promoter 197109 198108 0.995672 - . ID=CGI_10012731; scaffold617 TRF Tandem_Repeat 209346 210739 1540 + . . scaffold617 GLEAN promoter 222336 223335 0.999732 + . ID=CGI_10012732; scaffold617 GLEAN mRNA 223336 226211 0.999732 + . ID=CGI_10012732; scaffold617 TRF Tandem_Repeat 226227 226256 51 + . . scaffold617 GLEAN promoter 226743 227742 1 + . ID=CGI_10012733; scaffold617 GLEAN mRNA 227743 233473 1 + . ID=CGI_10012733; scaffold617 GLEAN mRNA 242157 247396 0.999351 - . ID=CGI_10012734; scaffold617 TRF Tandem_Repeat 242934 243849 1481 + . . scaffold617 GLEAN promoter 247397 248396 0.999351 - . ID=CGI_10012734; scaffold617 GLEAN promoter 250535 251534 0.999999 + . ID=CGI_10012735; scaffold617 GLEAN mRNA 251535 252509 0.999999 + . ID=CGI_10012735; scaffold617 GLEAN mRNA 257630 264699 1 - . ID=CGI_10012736; scaffold617 GLEAN promoter 264700 265699 1 - . ID=CGI_10012736; scaffold617 GLEAN promoter 267182 268181 0.999943 + . ID=CGI_10012737; scaffold617 GLEAN mRNA 268182 293713 0.999943 + . ID=CGI_10012737; scaffold617 WUBlastX LINE_CR1 277762 278016 87 - . . scaffold617 TRF Tandem_Repeat 287866 288109 226 + . . scaffold617 GLEAN mRNA 300285 305130 0.887701 - . ID=CGI_10012738; scaffold617 TRF Tandem_Repeat 302754 303633 615 + . . scaffold617 TRF Tandem_Repeat 303176 304113 355 + . . scaffold617 GLEAN promoter 305131 306130 0.887701 - . ID=CGI_10012738; scaffold617 TRF Tandem_Repeat 311720 311778 111 + . . scaffold617 GLEAN mRNA 312406 313245 0.997528 - . ID=CGI_10012739; scaffold617 GLEAN promoter 313246 314245 0.997528 - . ID=CGI_10012739; scaffold617 GLEAN promoter 317948 318947 0.804074 + . ID=CGI_10012740; scaffold617 GLEAN mRNA 318948 321214 0.804074 + . ID=CGI_10012740; scaffold617 TRF Tandem_Repeat 324822 324862 82 + . . scaffold617 TRF Tandem_Repeat 334672 334728 96 + . . scaffold619 GLEAN mRNA 960 2188 1 - . ID=CGI_10025748; scaffold619 GLEAN promoter 2189 3188 1 - . ID=CGI_10025748; scaffold619 TRF Tandem_Repeat 8451 8513 117 + . . scaffold619 TRF Tandem_Repeat 25118 25160 86 + . . scaffold619 TRF Tandem_Repeat 25266 25306 73 + . . scaffold619 TRF Tandem_Repeat 25412 25460 98 + . . scaffold619 GLEAN promoter 25637 26636 0.920624 + . ID=CGI_10025749; scaffold619 GLEAN mRNA 26637 29315 0.920624 + . ID=CGI_10025749; scaffold619 GLEAN promoter 32423 33422 1 + . ID=CGI_10025752; scaffold619 GLEAN mRNA 33423 36170 1 + . ID=CGI_10025752; scaffold619 TRF Tandem_Repeat 42749 42816 109 + . . scaffold619 TRF Tandem_Repeat 47895 48075 121 + . . scaffold619 TRF Tandem_Repeat 47988 48188 76 + . . scaffold619 TRF Tandem_Repeat 52645 52678 50 + . . scaffold619 WUBlastX LTR_Pao 53569 54402 454 - . . scaffold619 WUBlastX LTR_Pao 53767 54402 632 - . . scaffold619 WUBlastX LTR_Pao 54405 55742 886 - . . scaffold619 WUBlastX LTR_Pao 55753 58983 1721 - . . scaffold619 WUBlastX LTR_Pao 58081 59313 294 - . . scaffold619 WUBlastX DNA_PiggyBac 63160 63378 45 - . . scaffold619 GLEAN promoter 65195 66194 0.999676 + . ID=CGI_10025753; scaffold619 GLEAN mRNA 66195 93317 0.999676 + . ID=CGI_10025753; scaffold619 TRF Tandem_Repeat 67137 67286 255 + . . scaffold619 TRF Tandem_Repeat 90091 90482 201 + . . scaffold619 TRF Tandem_Repeat 90094 90346 143 + . . scaffold619 TRF Tandem_Repeat 90230 90477 203 + . . scaffold619 TRF Tandem_Repeat 91546 91879 237 + . . scaffold619 TRF Tandem_Repeat 91546 91879 288 + . . scaffold619 TRF Tandem_Repeat 91546 91882 225 + . . scaffold619 TRF Tandem_Repeat 91582 91881 224 + . . scaffold619 GLEAN mRNA 103724 104651 1 - . ID=CGI_10025754; scaffold619 GLEAN promoter 104652 105651 1 - . ID=CGI_10025754; scaffold619 TRF Tandem_Repeat 109720 109774 101 + . . scaffold619 TRF Tandem_Repeat 118814 118873 120 + . . scaffold619 TRF Tandem_Repeat 119560 119658 173 + . . scaffold619 TRF Tandem_Repeat 119707 119800 125 + . . scaffold619 TRF Tandem_Repeat 120572 120687 83 + . . scaffold619 TRF Tandem_Repeat 124770 125149 519 + . . scaffold619 WUBlastX LINE_L1-Tx1 131415 132875 88 - . . scaffold619 WUBlastX LINE_L1-Tx1 131415 132401 102 - . . scaffold619 WUBlastX LINE_L1-Tx1 132527 132757 122 - . . scaffold619 GLEAN mRNA 133305 165039 0.859619 - . ID=CGI_10025755; scaffold619 TRF Tandem_Repeat 137234 137275 59 + . . scaffold619 TRF Tandem_Repeat 137238 137273 56 + . . scaffold619 TRF Tandem_Repeat 143165 143211 76 + . . scaffold619 WUBlastX LINE_RTE-X 143876 144619 183 - . . scaffold619 WUBlastX LINE_RTE-X 144633 145454 441 - . . scaffold619 WUBlastX LINE_Jockey 145152 145508 27 - . . scaffold619 WUBlastX LINE_L2 146245 146328 25 - . . scaffold619 WUBlastX LINE_Jockey 146389 146487 20 - . . scaffold619 TRF Tandem_Repeat 151581 151620 62 + . . scaffold619 TRF Tandem_Repeat 161068 161103 72 + . . scaffold619 GLEAN promoter 165040 166039 0.859619 - . ID=CGI_10025755; scaffold619 WUBlastX LINE_CR1 167453 167548 70 + . . scaffold619 WUBlastX LINE_L2 167453 167578 58 + . . scaffold619 TRF Tandem_Repeat 167597 167803 217 + . . scaffold619 WUBlastX LINE_RTE-BovB 171203 171670 324 - . . scaffold619 WUBlastX LINE_R2 171221 171760 117 - . . scaffold619 WUBlastX LINE_RTE-BovB 171727 172005 63 - . . scaffold619 WUBlastX LINE_RTE-BovB 171736 171936 64 - . . scaffold619 TRF Tandem_Repeat 172178 172208 53 + . . scaffold619 GLEAN promoter 175342 176341 1 + . ID=CGI_10025756; scaffold619 GLEAN mRNA 176342 177128 1 + . ID=CGI_10025756; scaffold619 WUBlastX LTR_Gypsy 178614 178925 42 - . . scaffold619 WUBlastX LTR_Gypsy 178671 179414 606 - . . scaffold619 WUBlastX LTR_Gypsy 179866 182007 1018 - . . scaffold619 GLEAN promoter 185846 186845 0.998746 + . ID=CGI_10025757; scaffold619 GLEAN mRNA 186846 199805 0.998746 + . ID=CGI_10025757; scaffold619 TRF Tandem_Repeat 201004 201087 161 + . . scaffold619 GLEAN mRNA 203260 212400 1 - . ID=CGI_10025758; scaffold619 TRF Tandem_Repeat 206009 206066 116 + . . scaffold619 GLEAN promoter 211714 212713 1 + . ID=CGI_10025759; scaffold619 GLEAN promoter 212401 213400 1 - . ID=CGI_10025758; scaffold619 GLEAN mRNA 212714 220270 1 + . ID=CGI_10025759; scaffold619 GLEAN promoter 225727 226726 0.999676 + . ID=CGI_10025760; scaffold619 TRF Tandem_Repeat 226440 226491 104 + . . scaffold619 GLEAN mRNA 226727 233421 0.999676 + . ID=CGI_10025760; scaffold619 TRF Tandem_Repeat 227082 227109 56 + . . scaffold619 TRF Tandem_Repeat 233935 234339 513 + . . scaffold619 GLEAN promoter 245020 246019 0.835967 + . ID=CGI_10025761; scaffold619 GLEAN mRNA 246020 253969 0.835967 + . ID=CGI_10025761; scaffold619 GLEAN promoter 265382 266381 0.777738 + . ID=CGI_10025762; scaffold619 GLEAN mRNA 266382 273501 0.777738 + . ID=CGI_10025762; scaffold619 GLEAN mRNA 276319 284866 0.987208 - . ID=CGI_10025763; scaffold619 TRF Tandem_Repeat 276943 277008 89 + . . scaffold619 TRF Tandem_Repeat 277178 278694 2153 + . . scaffold619 TRF Tandem_Repeat 277178 278710 2194 + . . scaffold619 TRF Tandem_Repeat 280818 280871 108 + . . scaffold619 GLEAN promoter 284867 285866 0.987208 - . ID=CGI_10025763; scaffold619 GLEAN promoter 287364 288363 0.999675 + . ID=CGI_10025764; scaffold619 GLEAN mRNA 288364 304139 0.999675 + . ID=CGI_10025764; scaffold619 GLEAN promoter 308068 309067 0.999671 + . ID=CGI_10025765; scaffold619 GLEAN mRNA 309068 318686 0.999671 + . ID=CGI_10025765; scaffold619 TRF Tandem_Repeat 310714 310903 186 + . . scaffold619 GLEAN mRNA 319109 326293 0.999938 - . ID=CGI_10025766; scaffold619 GLEAN promoter 325936 326935 0.694269 + . ID=CGI_10025767; scaffold619 GLEAN promoter 326294 327293 0.999938 - . ID=CGI_10025766; scaffold619 GLEAN mRNA 326936 328186 0.694269 + . ID=CGI_10025767; scaffold619 GLEAN mRNA 329821 333999 1 - . ID=CGI_10025768; scaffold619 GLEAN promoter 334000 334999 1 - . ID=CGI_10025768; scaffold619 GLEAN promoter 334626 335625 1 + . ID=CGI_10025769; scaffold619 GLEAN mRNA 335626 356458 1 + . ID=CGI_10025769; scaffold619 TRF Tandem_Repeat 338555 338593 78 + . . scaffold619 TRF Tandem_Repeat 342269 342299 62 + . . scaffold619 TRF Tandem_Repeat 350338 350440 188 + . . scaffold619 TRF Tandem_Repeat 369571 369619 98 + . . scaffold619 TRF Tandem_Repeat 377394 377452 118 + . . scaffold619 TRF Tandem_Repeat 379297 380263 365 + . . scaffold619 TRF Tandem_Repeat 379763 380226 619 + . . scaffold619 GLEAN promoter 383407 384406 0.999624 + . ID=CGI_10025770; scaffold619 GLEAN mRNA 384407 406242 0.999624 + . ID=CGI_10025770; scaffold619 TRF Tandem_Repeat 395315 395345 62 + . . scaffold619 TRF Tandem_Repeat 401387 401429 50 + . . scaffold619 TRF Tandem_Repeat 406933 406992 120 + . . scaffold619 GLEAN promoter 419013 420012 1 + . ID=CGI_10025771; scaffold619 GLEAN mRNA 420013 432267 1 + . ID=CGI_10025771; scaffold619 TRF Tandem_Repeat 420440 420507 136 + . . scaffold619 TRF Tandem_Repeat 422285 422394 211 + . . scaffold619 TRF Tandem_Repeat 432820 432853 68 + . . scaffold619 GLEAN promoter 435179 436178 1 + . ID=CGI_10025772; scaffold619 GLEAN mRNA 436179 442239 1 + . ID=CGI_10025772; scaffold619 WUBlastX LTR_Ngaro 459242 459559 118 - . . scaffold619 WUBlastX LTR_Ngaro 459257 459658 75 - . . scaffold619 WUBlastX LTR_Ngaro 459284 459550 119 - . . scaffold619 WUBlastX LTR_Ngaro 459765 460151 104 - . . scaffold619 WUBlastX LTR_Ngaro 459771 460235 80 - . . scaffold619 WUBlastX LTR_Ngaro 460234 460695 123 - . . scaffold619 WUBlastX LTR_Ngaro 460689 460904 120 - . . scaffold619 WUBlastX LTR_Ngaro 461303 461527 75 - . . scaffold619 WUBlastX LTR_Ngaro 461354 461509 78 - . . scaffold619 WUBlastX LTR_Ngaro 461518 461775 61 - . . scaffold619 WUBlastX DNA_hAT-Ac 462083 462337 51 - . . scaffold619 WUBlastX DNA_hAT-Ac 462179 462826 127 - . . scaffold619 WUBlastX DNA_hAT-Ac 462823 463203 154 - . . scaffold619 WUBlastX DNA_hAT-Ac 463134 463373 112 - . . scaffold619 WUBlastX DNA_hAT-Ac 463391 463435 27 - . . scaffold619 WUBlastX DNA_hAT-Ac 463612 463779 21 - . . scaffold619 WUBlastX DNA_P 463803 464015 38 + . . scaffold619 WUBlastX DNA_IS4EU 464751 465968 316 + . . scaffold619 WUBlastX DNA_IS4EU 465135 465968 362 + . . scaffold619 WUBlastX DNA_Kolobok-IS4 466201 466992 155 - . . scaffold619 WUBlastX DNA_IS4EU 466207 467493 95 - . . scaffold619 WUBlastX DNA_IS4EU 466294 466920 226 - . . scaffold619 WUBlastX DNA_IS4EU 466915 467667 85 - . . scaffold619 WUBlastX DNA_hAT-Ac 468732 468884 49 - . . scaffold619 TRF Tandem_Repeat 471106 471143 76 + . . scaffold619 TRF Tandem_Repeat 472210 472264 110 + . . scaffold619 GLEAN promoter 472806 473805 0.999047 + . ID=CGI_10025773; scaffold619 GLEAN mRNA 473806 493937 0.999047 + . ID=CGI_10025773; scaffold619 WUBlastX LTR_Ngaro 481715 482002 56 - . . scaffold619 TRF Tandem_Repeat 482748 482845 81 + . . scaffold619 WUBlastX LTR_Ngaro 483292 483714 69 - . . scaffold619 WUBlastX LTR_Ngaro 483385 483930 95 - . . scaffold619 WUBlastX LTR_Ngaro 483837 483980 47 - . . scaffold619 WUBlastX LTR_Ngaro 483858 484256 22 - . . scaffold619 WUBlastX LTR_Ngaro 484218 484787 81 - . . scaffold619 WUBlastX LTR_Ngaro 484356 484790 84 - . . scaffold619 WUBlastX LTR_Ngaro 484793 485029 156 - . . scaffold619 WUBlastX LTR_Ngaro 485316 485726 50 - . . scaffold619 WUBlastX LTR_Ngaro 485379 485759 95 - . . scaffold619 WUBlastX DNA_hAT-Hobo 486234 486398 68 - . . scaffold619 WUBlastX DNA_hAT-Ac 486264 487511 257 - . . scaffold619 WUBlastX DNA_hAT-Tip100 487161 487574 71 - . . scaffold619 WUBlastX DNA_hAT-Ac 487615 487692 39 - . . scaffold619 WUBlastX DNA_hAT-Ac 487683 487751 24 - . . scaffold619 WUBlastX DNA_hAT-Ac 487692 487925 20 - . . scaffold619 WUBlastX DNA_hAT-Ac 487930 488070 27 - . . scaffold619 WUBlastX DNA_hAT-Ac 487963 488073 53 - . . scaffold619 WUBlastX DNA_hAT-Ac 488220 488606 87 - . . scaffold619 TRF Tandem_Repeat 492042 492089 51 + . . scaffold619 TRF Tandem_Repeat 492047 492096 73 + . . scaffold619 TRF Tandem_Repeat 492051 492096 56 + . . scaffold619 TRF Tandem_Repeat 492120 493110 1486 + . . scaffold619 TRF Tandem_Repeat 494199 494228 60 + . . scaffold619 TRF Tandem_Repeat 496202 496254 106 + . . scaffold619 GLEAN mRNA 496347 497677 0.999675 - . ID=CGI_10025774; scaffold619 GLEAN promoter 497678 498677 0.999675 - . ID=CGI_10025774; scaffold619 WUBlastX DNA_Maverick 504451 504693 29 + . . scaffold619 WUBlastX DNA_Maverick 504451 504630 53 + . . scaffold619 WUBlastX DNA_Maverick 504701 504937 60 + . . scaffold619 WUBlastX DNA_Maverick 506103 506879 239 + . . scaffold619 TRF Tandem_Repeat 552783 552823 82 + . . scaffold619 TRF Tandem_Repeat 561366 561407 84 + . . scaffold619 TRF Tandem_Repeat 561664 561720 114 + . . scaffold619 GLEAN mRNA 562382 563821 1 - . ID=CGI_10025775; scaffold619 WUBlastX DNA_IS4EU 563624 564013 72 - . . scaffold619 GLEAN promoter 563822 564821 1 - . ID=CGI_10025775; scaffold619 TRF Tandem_Repeat 587420 588191 1061 + . . scaffold619 TRF Tandem_Repeat 589076 589980 1294 + . . scaffold619 GLEAN mRNA 591060 599360 0.966872 - . ID=CGI_10025776; scaffold619 GLEAN promoter 599361 600360 0.966872 - . ID=CGI_10025776; scaffold619 TRF Tandem_Repeat 615468 616630 1144 + . . scaffold619 TRF Tandem_Repeat 618998 619149 91 + . . scaffold619 TRF Tandem_Repeat 619018 619152 150 + . . scaffold619 WUBlastX DNA_hAT-hATw 621597 624350 689 + . . scaffold619 WUBlastX DNA_hAT-hATw 624156 624590 29 + . . scaffold619 GLEAN promoter 637709 638708 0.999016 + . ID=CGI_10025777; scaffold619 GLEAN mRNA 638709 639310 0.999016 + . ID=CGI_10025777; scaffold619 TRF Tandem_Repeat 642592 642633 84 + . . scaffold619 GLEAN promoter 643406 644405 0.554251 + . ID=CGI_10025778; scaffold619 GLEAN mRNA 644406 650513 0.554251 + . ID=CGI_10025778; scaffold619 TRF Tandem_Repeat 651990 652054 112 + . . scaffold619 TRF Tandem_Repeat 654117 654296 179 + . . scaffold619 TRF Tandem_Repeat 654119 654281 153 + . . scaffold619 WUBlastX LINE_RTE-X 659713 659994 90 + . . scaffold619 WUBlastX LINE_RTE-X 659782 659997 116 + . . scaffold619 WUBlastX LINE_RTE-X 659785 660039 64 + . . scaffold619 TRF Tandem_Repeat 662903 662953 102 + . . scaffold619 TRF Tandem_Repeat 664386 664429 88 + . . scaffold619 TRF Tandem_Repeat 665351 665411 95 + . . scaffold619 TRF Tandem_Repeat 668919 668944 52 + . . scaffold619 TRF Tandem_Repeat 671958 672000 86 + . . scaffold619 TRF Tandem_Repeat 673429 673483 110 + . . scaffold619 TRF Tandem_Repeat 673951 674001 102 + . . scaffold619 TRF Tandem_Repeat 675103 675207 112 + . . scaffold619 TRF Tandem_Repeat 675371 675475 103 + . . scaffold619 TRF Tandem_Repeat 675649 675682 68 + . . scaffold619 TRF Tandem_Repeat 678332 678367 72 + . . scaffold619 TRF Tandem_Repeat 679162 679200 78 + . . scaffold619 GLEAN promoter 684404 685403 1 + . ID=CGI_10025779; scaffold619 GLEAN mRNA 685404 691249 1 + . ID=CGI_10025779; scaffold619 TRF Tandem_Repeat 693309 693349 57 + . . scaffold619 WUBlastX DNA_TcMar-Marin 696211 696603 45 - . . scaffold619 WUBlastX DNA_TcMar-Marin 696328 696600 73 - . . scaffold619 WUBlastX DNA_TcMar-Marin 696603 696704 34 - . . scaffold619 WUBlastX DNA_TcMar-Marin 696704 696928 55 - . . scaffold619 TRF Tandem_Repeat 697519 697585 134 + . . scaffold619 TRF Tandem_Repeat 699199 699246 96 + . . scaffold619 GLEAN promoter 702314 703313 0.648556 + . ID=CGI_10025780; scaffold619 GLEAN mRNA 703314 709032 0.648556 + . ID=CGI_10025780; scaffold619 GLEAN mRNA 712256 713564 1 - . ID=CGI_10025781; scaffold619 GLEAN promoter 712979 713978 0.701383 + . ID=CGI_10025782; scaffold619 GLEAN promoter 713565 714564 1 - . ID=CGI_10025781; scaffold619 GLEAN mRNA 713979 728707 0.701383 + . ID=CGI_10025782; scaffold619 TRF Tandem_Repeat 717731 717973 387 + . . scaffold619 TRF Tandem_Repeat 721080 721135 112 + . . scaffold619 TRF Tandem_Repeat 733722 733779 80 + . . scaffold619 GLEAN promoter 740975 741974 1 + . ID=CGI_10025783; scaffold619 GLEAN mRNA 741975 747474 1 + . ID=CGI_10025783; scaffold619 WUBlastX DNA_hAT 745837 747360 277 + . . scaffold619 WUBlastX LINE_L2 752936 754210 152 + . . scaffold619 WUBlastX LINE_L2 753146 754159 465 + . . scaffold619 WUBlastX LINE_L2 754195 754407 22 + . . scaffold619 WUBlastX LINE_L2 754353 754541 43 + . . scaffold619 GLEAN promoter 758711 759710 1 + . ID=CGI_10025784; scaffold619 GLEAN mRNA 759711 760349 1 + . ID=CGI_10025784; scaffold619 WUBlastX LINE_L2 764482 764523 21 + . . scaffold619 WUBlastX LINE_RTE-X 764715 765770 236 + . . scaffold619 WUBlastX LINE_RTE-X 764790 765596 387 + . . scaffold619 WUBlastX LINE_RTE-X 765623 765964 213 + . . scaffold619 WUBlastX LINE_RTE-X 765647 766048 154 + . . scaffold619 WUBlastX LINE_RTE-X 765647 766681 124 + . . scaffold619 WUBlastX LINE_RTE-X 766517 766720 38 + . . scaffold619 GLEAN mRNA 775777 792970 0.999676 - . ID=CGI_10025785; scaffold619 WUBlastX LINE_RTE-X 778840 779217 118 - . . scaffold619 WUBlastX LINE_RTE-X 778918 779232 154 - . . scaffold619 WUBlastX LINE_RTE-X 779265 779498 42 - . . scaffold619 GLEAN promoter 782869 783868 0.999994 + . ID=CGI_10025786; scaffold619 GLEAN mRNA 783869 784423 0.999994 + . ID=CGI_10025786; scaffold619 TRF Tandem_Repeat 784129 784174 74 + . . scaffold619 GLEAN promoter 792971 793970 0.999676 - . ID=CGI_10025785; scaffold619 WUBlastX LINE_RTE-X 794640 795266 40 - . . scaffold619 WUBlastX LINE_RTE-X 794886 795311 87 - . . scaffold619 WUBlastX LINE_RTE-X 795332 795673 40 - . . scaffold619 WUBlastX LINE_RTE-X 795332 795577 54 - . . scaffold619 TRF Tandem_Repeat 803155 803201 85 + . . scaffold619 TRF Tandem_Repeat 838845 838874 60 + . . scaffold619 GLEAN promoter 839831 840830 0.999988 + . ID=CGI_10025787; scaffold619 GLEAN mRNA 840831 857635 0.999988 + . ID=CGI_10025787; scaffold619 GLEAN mRNA 856412 864177 1 - . ID=CGI_10025788; scaffold619 TRF Tandem_Repeat 861357 861435 158 + . . scaffold619 GLEAN promoter 864178 865177 1 - . ID=CGI_10025788; scaffold619 GLEAN mRNA 868381 869199 0.777767 - . ID=CGI_10025789; scaffold619 GLEAN promoter 869200 870199 0.777767 - . ID=CGI_10025789; scaffold619 GLEAN mRNA 870805 880758 0.920529 - . ID=CGI_10025790; scaffold619 WUBlastX DNA_MuDR 874895 875068 20 - . . scaffold619 WUBlastX DNA_MuDR 874958 875068 32 - . . scaffold619 WUBlastX DNA_MuDR 875302 875658 153 - . . scaffold619 WUBlastX DNA_MuDR 875957 876022 20 - . . scaffold619 TRF Tandem_Repeat 876091 876391 409 + . . scaffold619 TRF Tandem_Repeat 876901 877496 704 + . . scaffold619 GLEAN promoter 880759 881758 0.920529 - . ID=CGI_10025790; scaffold619 TRF Tandem_Repeat 887870 887913 88 + . . scaffold619 TRF Tandem_Repeat 887873 887936 67 + . . scaffold619 TRF Tandem_Repeat 892686 892732 94 + . . scaffold619 TRF Tandem_Repeat 895553 895595 86 + . . scaffold619 TRF Tandem_Repeat 902366 902398 50 + . . scaffold619 TRF Tandem_Repeat 906321 906483 193 + . . scaffold619 TRF Tandem_Repeat 906869 906949 67 + . . scaffold619 GLEAN promoter 912101 913100 0.499646 + . ID=CGI_10025791; scaffold619 TRF Tandem_Repeat 912638 912748 168 + . . scaffold619 GLEAN mRNA 913101 915625 0.499646 + . ID=CGI_10025791; scaffold619 TRF Tandem_Repeat 917086 917132 51 + . . scaffold619 WUBlastX LTR_Ngaro 921442 922008 243 + . . scaffold619 WUBlastX LTR_Ngaro 921959 922558 339 + . . scaffold619 WUBlastX LTR_Ngaro 921959 922708 322 + . . scaffold619 WUBlastX LTR_Ngaro 922634 923026 82 + . . scaffold619 WUBlastX LTR_Ngaro 923070 923459 107 + . . scaffold619 WUBlastX LTR_Ngaro 923452 923559 41 + . . scaffold619 TRF Tandem_Repeat 925547 926418 1197 + . . scaffold619 WUBlastX LINE_L1-Tx1 927429 927872 33 - . . scaffold619 WUBlastX LINE_L1-Tx1 927669 927872 48 - . . scaffold619 TRF Tandem_Repeat 928632 928660 58 + . . scaffold619 GLEAN mRNA 939602 940072 0.777609 - . ID=CGI_10025792; scaffold619 GLEAN promoter 940073 941072 0.777609 - . ID=CGI_10025792; scaffold619 GLEAN mRNA 940289 941206 1 - . ID=CGI_10025793; scaffold619 GLEAN promoter 941207 942206 1 - . ID=CGI_10025793; scaffold619 GLEAN mRNA 949722 959476 0.544338 - . ID=CGI_10025794; scaffold619 WUBlastX DNA_hAT-hATw 950997 952025 43 + . . scaffold619 WUBlastX DNA_hAT-hATw 951324 952010 106 + . . scaffold619 WUBlastX DNA_hAT-hATw 951909 953348 213 + . . scaffold619 WUBlastX DNA_hAT-hATw 952227 953405 254 + . . scaffold619 TRF Tandem_Repeat 956980 957120 89 + . . scaffold619 GLEAN promoter 959477 960476 0.544338 - . ID=CGI_10025794; scaffold619 TRF Tandem_Repeat 963924 963968 90 + . . scaffold619 TRF Tandem_Repeat 964739 964795 114 + . . scaffold619 TRF Tandem_Repeat 965014 965052 78 + . . scaffold619 TRF Tandem_Repeat 965102 965134 66 + . . scaffold619 GLEAN promoter 971445 972444 0.937953 + . ID=CGI_10025795; scaffold619 TRF Tandem_Repeat 971743 971769 54 + . . scaffold619 GLEAN mRNA 972445 1008453 0.937953 + . ID=CGI_10025795; scaffold619 TRF Tandem_Repeat 992404 992431 56 + . . scaffold619 TRF Tandem_Repeat 1001354 1001534 202 + . . scaffold619 GLEAN promoter 1011918 1012917 0.999933 + . ID=CGI_10025796; scaffold619 GLEAN mRNA 1012918 1015392 0.999933 + . ID=CGI_10025796; scaffold619 TRF Tandem_Repeat 1039729 1039791 56 + . . scaffold619 WUBlastX LINE_L1-Tx1 1040831 1041172 26 - . . scaffold619 WUBlastX DNA_Crypton 1042927 1043259 73 - . . scaffold619 TRF Tandem_Repeat 1044284 1044325 84 + . . scaffold619 GLEAN mRNA 1046287 1056122 0.495318 - . ID=CGI_10025798; scaffold619 WUBlastX LTR_Gypsy 1048060 1048311 24 - . . scaffold619 GLEAN promoter 1056123 1057122 0.495318 - . ID=CGI_10025798; scaffold619 GLEAN mRNA 1056468 1056962 0.981086 - . ID=CGI_10025799; scaffold619 GLEAN promoter 1056963 1057962 0.981086 - . ID=CGI_10025799; scaffold619 TRF Tandem_Repeat 1057066 1057101 72 + . . scaffold619 GLEAN promoter 1058927 1059926 0.995804 + . ID=CGI_10025800; scaffold619 GLEAN mRNA 1059927 1062389 0.995804 + . ID=CGI_10025800; scaffold619 WUBlastX LINE_RTE-X 1066479 1066865 104 - . . scaffold619 GLEAN mRNA 1070584 1074375 0.856709 - . ID=CGI_10025801; scaffold619 WUBlastX LTR_Gypsy 1071479 1071661 33 - . . scaffold619 WUBlastX LTR_Gypsy 1072833 1072991 23 - . . scaffold619 GLEAN promoter 1074376 1075375 0.856709 - . ID=CGI_10025801; scaffold619 GLEAN promoter 1075331 1076330 1 + . ID=CGI_10025802; scaffold619 GLEAN mRNA 1076331 1078793 1 + . ID=CGI_10025802; scaffold619 GLEAN mRNA 1081692 1094410 0.999676 - . ID=CGI_10025803; scaffold619 WUBlastX LTR_Gypsy 1083472 1083654 39 - . . scaffold619 TRF Tandem_Repeat 1083784 1083814 62 + . . scaffold619 GLEAN promoter 1094411 1095410 0.999676 - . ID=CGI_10025803; scaffold619 GLEAN mRNA 1095142 1099971 1 - . ID=CGI_10025804; scaffold619 GLEAN promoter 1099972 1099986 1 - . ID=CGI_10025804; scaffold62 TRF Tandem_Repeat 722 746 50 + . . scaffold62 TRF Tandem_Repeat 2108 2166 109 + . . scaffold62 GLEAN mRNA 11522 26854 1 - . ID=CGI_10015703; scaffold62 WUBlastX LTR_DIRS 23210 23467 112 + . . scaffold62 GLEAN promoter 26855 27854 1 - . ID=CGI_10015703; scaffold62 TRF Tandem_Repeat 27118 27321 142 + . . scaffold62 TRF Tandem_Repeat 27538 27978 586 + . . scaffold62 GLEAN mRNA 30976 31608 1 - . ID=CGI_10015704; scaffold62 GLEAN promoter 31609 32608 1 - . ID=CGI_10015704; scaffold62 TRF Tandem_Repeat 36114 36865 1018 + . . scaffold62 GLEAN promoter 46415 47414 0.985692 + . ID=CGI_10015705; scaffold62 GLEAN mRNA 47415 47944 0.985692 + . ID=CGI_10015705; scaffold62 TRF Tandem_Repeat 48022 48054 66 + . . scaffold62 WUBlastX DNA_hAT-Ac 48521 49114 205 + . . scaffold62 WUBlastX DNA_hAT-Ac 48545 49264 113 + . . scaffold62 TRF Tandem_Repeat 52574 52631 116 + . . scaffold62 WUBlastX LTR_Gypsy-Cigr 59829 60974 952 - . . scaffold62 TRF Tandem_Repeat 62518 62571 108 + . . scaffold62 TRF Tandem_Repeat 77892 77933 84 + . . scaffold62 TRF Tandem_Repeat 79273 79317 90 + . . scaffold62 TRF Tandem_Repeat 83081 83779 968 + . . scaffold62 TRF Tandem_Repeat 88206 88243 76 + . . scaffold62 TRF Tandem_Repeat 108029 109093 1286 + . . scaffold62 WUBlastX LTR_Gypsy 113126 113479 114 + . . scaffold62 WUBlastX LTR_Gypsy 113204 113479 142 + . . scaffold62 WUBlastX LTR_Gypsy 113454 113771 36 + . . scaffold62 WUBlastX LTR_Gypsy 113469 113609 139 + . . scaffold62 WUBlastX LTR_Gypsy 113487 113693 60 + . . scaffold62 WUBlastX LTR_Gypsy 113487 113642 71 + . . scaffold62 WUBlastX LTR_Gypsy 115676 115810 73 + . . scaffold62 WUBlastX LTR_Gypsy 115697 115819 76 + . . scaffold62 WUBlastX LTR_Gypsy 117197 117238 27 + . . scaffold62 WUBlastX LTR_Gypsy 117237 117398 79 + . . scaffold62 WUBlastX LTR_Gypsy 117400 117501 79 + . . scaffold62 WUBlastX LTR_Gypsy 117406 117522 59 + . . scaffold62 WUBlastX LTR_Gypsy 117521 117622 60 + . . scaffold62 WUBlastX LTR_Gypsy 117872 118189 57 + . . scaffold62 WUBlastX LTR_Gypsy 118191 118343 26 + . . scaffold62 WUBlastX LTR_Gypsy 118191 118463 20 + . . scaffold62 TRF Tandem_Repeat 119603 119667 51 + . . scaffold62 WUBlastX LINE_L2 122139 122546 101 + . . scaffold62 WUBlastX LINE_CR1-L2 122250 122612 131 + . . scaffold62 WUBlastX LINE_CR1-L2 123122 123790 135 + . . scaffold62 WUBlastX LINE_CR1-L2 123784 124737 575 + . . scaffold62 TRF Tandem_Repeat 124811 124874 83 + . . scaffold62 WUBlastX LINE_CR1-L2 125587 126573 472 + . . scaffold62 GLEAN mRNA 144216 151035 0.995011 - . ID=CGI_10015706; scaffold62 TRF Tandem_Repeat 148536 149660 1675 + . . scaffold62 GLEAN promoter 151036 152035 0.995011 - . ID=CGI_10015706; scaffold62 GLEAN mRNA 159149 162299 1 - . ID=CGI_10015707; scaffold62 TRF Tandem_Repeat 160650 160790 120 + . . scaffold62 GLEAN promoter 162300 163299 1 - . ID=CGI_10015707; scaffold62 TRF Tandem_Repeat 162593 162628 63 + . . scaffold62 TRF Tandem_Repeat 163069 163108 53 + . . scaffold62 GLEAN promoter 171221 172220 0.776794 + . ID=CGI_10015708; scaffold62 GLEAN mRNA 172221 172448 0.776794 + . ID=CGI_10015708; scaffold62 TRF Tandem_Repeat 173681 175352 1984 + . . scaffold62 TRF Tandem_Repeat 173894 175352 1897 + . . scaffold62 GLEAN mRNA 175841 183101 0.995354 - . ID=CGI_10015709; scaffold62 GLEAN promoter 183102 184101 0.995354 - . ID=CGI_10015709; scaffold62 TRF Tandem_Repeat 183573 183674 77 + . . scaffold62 TRF Tandem_Repeat 183578 183666 126 + . . scaffold62 WUBlastX LINE_L2 184286 184729 104 - . . scaffold62 GLEAN mRNA 191010 198035 0.999284 - . ID=CGI_10015710; scaffold62 TRF Tandem_Repeat 194161 194227 89 + . . scaffold62 TRF Tandem_Repeat 196467 196533 71 + . . scaffold62 GLEAN promoter 198036 199035 0.999284 - . ID=CGI_10015710; scaffold62 GLEAN promoter 198212 199211 1 + . ID=CGI_10015711; scaffold62 GLEAN mRNA 199212 200210 1 + . ID=CGI_10015711; scaffold62 GLEAN mRNA 203127 218652 0.999948 - . ID=CGI_10015712; scaffold62 TRF Tandem_Repeat 206647 207437 960 + . . scaffold62 TRF Tandem_Repeat 207608 207638 53 + . . scaffold62 GLEAN promoter 218653 219652 0.999948 - . ID=CGI_10015712; scaffold62 GLEAN mRNA 221303 263368 0.789941 - . ID=CGI_10015713; scaffold62 TRF Tandem_Repeat 235122 235146 50 + . . scaffold62 TRF Tandem_Repeat 238298 238370 66 + . . scaffold62 GLEAN promoter 263369 264368 0.789941 - . ID=CGI_10015713; scaffold62 GLEAN mRNA 263802 267291 0.983642 - . ID=CGI_10015714; scaffold62 GLEAN promoter 267292 268291 0.983642 - . ID=CGI_10015714; scaffold62 GLEAN promoter 267292 268291 0.999999 + . ID=CGI_10015716; scaffold62 GLEAN mRNA 268126 277352 1 - . ID=CGI_10015715; scaffold62 GLEAN mRNA 268292 296927 0.999999 + . ID=CGI_10015716; scaffold62 GLEAN promoter 277353 278352 1 - . ID=CGI_10015715; scaffold62 GLEAN mRNA 299267 303352 0.993887 - . ID=CGI_10015717; scaffold62 WUBlastX LINE_RTE-BovB 299576 299725 21 - . . scaffold62 GLEAN promoter 303353 304352 0.993887 - . ID=CGI_10015717; scaffold62 TRF Tandem_Repeat 305904 305984 148 + . . scaffold62 GLEAN mRNA 307791 314674 1 - . ID=CGI_10015718; scaffold62 GLEAN promoter 314675 315674 1 - . ID=CGI_10015718; scaffold62 TRF Tandem_Repeat 337714 337772 81 + . . scaffold62 TRF Tandem_Repeat 337716 337772 60 + . . scaffold62 TRF Tandem_Repeat 337716 337766 75 + . . scaffold62 TRF Tandem_Repeat 345698 345733 72 + . . scaffold62 TRF Tandem_Repeat 346747 346786 80 + . . scaffold62 GLEAN mRNA 347289 348734 0.999999 - . ID=CGI_10015719; scaffold62 GLEAN promoter 348735 349734 0.999999 - . ID=CGI_10015719; scaffold62 TRF Tandem_Repeat 349175 349207 66 + . . scaffold62 GLEAN mRNA 349887 359864 0.777737 - . ID=CGI_10015720; scaffold62 GLEAN promoter 359865 360864 0.777737 - . ID=CGI_10015720; scaffold62 WUBlastX LTR_Gypsy 365990 366190 56 + . . scaffold62 WUBlastX LTR_Gypsy 367226 367339 25 + . . scaffold62 WUBlastX LTR_Gypsy 367241 367333 29 + . . scaffold62 WUBlastX LTR_Gypsy 367436 367750 30 + . . scaffold62 WUBlastX LTR_Gypsy 367511 368242 533 + . . scaffold62 TRF Tandem_Repeat 371893 371917 50 + . . scaffold62 GLEAN mRNA 374321 377906 1 - . ID=CGI_10015721; scaffold62 GLEAN promoter 377907 378906 1 - . ID=CGI_10015721; scaffold62 TRF Tandem_Repeat 389443 389481 78 + . . scaffold62 WUBlastX LINE_RTE-X 401481 401564 31 - . . scaffold62 WUBlastX LINE_RTE-X 401548 401952 34 - . . scaffold62 WUBlastX LINE_RTE-X 401620 401940 56 - . . scaffold62 WUBlastX LINE_RTE-X 401785 401937 59 - . . scaffold62 GLEAN promoter 404682 405681 1 + . ID=CGI_10015722; scaffold62 GLEAN mRNA 405682 411209 1 + . ID=CGI_10015722; scaffold62 TRF Tandem_Repeat 406483 406509 54 + . . scaffold62 TRF Tandem_Repeat 409784 409850 98 + . . scaffold62 TRF Tandem_Repeat 410631 410695 112 + . . scaffold62 TRF Tandem_Repeat 411429 411482 108 + . . scaffold62 TRF Tandem_Repeat 423057 423096 50 + . . scaffold62 TRF Tandem_Repeat 423915 424015 63 + . . scaffold62 TRF Tandem_Repeat 429259 429284 52 + . . scaffold62 GLEAN mRNA 439963 440193 0.999067 - . ID=CGI_10015723; scaffold62 GLEAN promoter 440194 441193 0.999067 - . ID=CGI_10015723; scaffold62 TRF Tandem_Repeat 441211 441250 53 + . . scaffold620 GLEAN promoter 925 1924 1 + . ID=CGI_10000261; scaffold620 GLEAN mRNA 1925 3135 1 + . ID=CGI_10000261; scaffold621 TRF Tandem_Repeat 23557 23606 82 + . . scaffold621 TRF Tandem_Repeat 34249 35153 685 + . . scaffold621 TRF Tandem_Repeat 34249 35153 761 + . . scaffold621 TRF Tandem_Repeat 37787 37830 52 + . . scaffold621 WUBlastX DNA_Sola 39930 40178 69 + . . scaffold621 GLEAN mRNA 41322 41708 1 - . ID=CGI_10017669; scaffold621 GLEAN promoter 41709 42708 1 - . ID=CGI_10017669; scaffold621 WUBlastX DNA_TcMar-Marin 44906 44935 32 + . . scaffold621 WUBlastX DNA_TcMar-Marin 45189 45317 42 + . . scaffold621 TRF Tandem_Repeat 64570 64678 132 + . . scaffold621 GLEAN mRNA 65448 89925 0.549323 - . ID=CGI_10017670; scaffold621 TRF Tandem_Repeat 71765 71800 72 + . . scaffold621 TRF Tandem_Repeat 72006 72034 58 + . . scaffold621 WUBlastX LINE_RTE-X 72300 72998 115 - . . scaffold621 TRF Tandem_Repeat 75590 75649 120 + . . scaffold621 TRF Tandem_Repeat 78158 78274 83 + . . scaffold621 TRF Tandem_Repeat 78274 78412 116 + . . scaffold621 GLEAN promoter 89926 90925 0.549323 - . ID=CGI_10017670; scaffold621 TRF Tandem_Repeat 91961 92912 1317 + . . scaffold621 WUBlastX LTR_Gypsy-Cigr 92991 93212 90 + . . scaffold621 WUBlastX DNA_TcMar-Fot1 96244 96516 112 + . . scaffold621 WUBlastX DNA_TcMar-Fot1 96247 96633 86 + . . scaffold621 WUBlastX DNA_TcMar-Fot1 96295 96699 49 + . . scaffold621 WUBlastX DNA_TcMar-m44 97110 97334 124 + . . scaffold621 TRF Tandem_Repeat 104382 105263 738 + . . scaffold621 WUBlastX DNA_hAT-Tip100 124947 125969 551 - . . scaffold621 GLEAN promoter 126381 127380 0.796035 + . ID=CGI_10017672; scaffold621 GLEAN mRNA 127381 238205 0.796035 + . ID=CGI_10017672; scaffold621 TRF Tandem_Repeat 133781 133835 103 + . . scaffold621 WUBlastX LTR_DIRS 151191 152090 389 - . . scaffold621 WUBlastX LTR_DIRS 151982 153964 782 - . . scaffold621 WUBlastX LTR_DIRS 152324 154069 907 - . . scaffold621 WUBlastX LTR_Gypsy 153332 154258 27 - . . scaffold621 GLEAN mRNA 154047 155567 0.573337 - . ID=CGI_10017674; scaffold621 WUBlastX LTR_Gypsy 154248 154445 26 - . . scaffold621 GLEAN promoter 155568 156567 0.573337 - . ID=CGI_10017674; scaffold621 TRF Tandem_Repeat 164676 164728 106 + . . scaffold621 TRF Tandem_Repeat 189470 189711 430 + . . scaffold621 TRF Tandem_Repeat 192898 192951 92 + . . scaffold621 TRF Tandem_Repeat 204692 204741 100 + . . scaffold621 TRF Tandem_Repeat 212237 212331 118 + . . scaffold621 TRF Tandem_Repeat 212355 213146 1126 + . . scaffold621 TRF Tandem_Repeat 234840 235315 653 + . . scaffold621 TRF Tandem_Repeat 234852 235405 508 + . . scaffold621 TRF Tandem_Repeat 235150 235403 199 + . . scaffold621 TRF Tandem_Repeat 235232 235318 59 + . . scaffold621 TRF Tandem_Repeat 235331 235399 57 + . . scaffold621 GLEAN mRNA 240083 240417 1 - . ID=CGI_10017675; scaffold621 GLEAN promoter 240418 241417 1 - . ID=CGI_10017675; scaffold621 TRF Tandem_Repeat 240433 240549 141 + . . scaffold621 GLEAN mRNA 240724 259043 0.999593 - . ID=CGI_10017676; scaffold621 TRF Tandem_Repeat 244099 244170 74 + . . scaffold621 TRF Tandem_Repeat 244102 244169 70 + . . scaffold621 TRF Tandem_Repeat 244102 244170 77 + . . scaffold621 TRF Tandem_Repeat 244103 244170 63 + . . scaffold621 TRF Tandem_Repeat 253537 253585 98 + . . scaffold621 TRF Tandem_Repeat 258810 258873 128 + . . scaffold621 GLEAN promoter 259044 260043 0.999593 - . ID=CGI_10017676; scaffold621 GLEAN mRNA 265576 316930 0.261056 - . ID=CGI_10017677; scaffold621 TRF Tandem_Repeat 283759 283850 53 + . . scaffold621 TRF Tandem_Repeat 291166 291220 110 + . . scaffold621 TRF Tandem_Repeat 299344 299428 161 + . . scaffold621 TRF Tandem_Repeat 302301 302333 66 + . . scaffold621 WUBlastX LTR_Ngaro 303778 304539 143 + . . scaffold621 WUBlastX LTR_Ngaro 303877 304749 75 + . . scaffold621 WUBlastX LTR_Ngaro 303940 304509 209 + . . scaffold621 WUBlastX LTR_Ngaro 304087 304563 223 + . . scaffold621 WUBlastX LTR_Ngaro 304796 306352 1128 + . . scaffold621 WUBlastX LTR_Ngaro 306271 306684 70 + . . scaffold621 TRF Tandem_Repeat 314190 314242 55 + . . scaffold621 WUBlastX DNA_Academ 314683 315774 536 - . . scaffold621 WUBlastX DNA_Academ 315804 316538 225 - . . scaffold621 WUBlastX DNA_Academ 316211 316969 149 - . . scaffold621 WUBlastX DNA_Academ 316556 316813 177 - . . scaffold621 GLEAN promoter 316931 317930 0.261056 - . ID=CGI_10017677; scaffold621 WUBlastX DNA_Academ 316984 317430 298 - . . scaffold621 WUBlastX DNA_Academ 317387 317626 71 - . . scaffold621 WUBlastX DNA_Academ 317641 318339 149 - . . scaffold621 WUBlastX DNA_Academ 317659 318882 48 - . . scaffold621 WUBlastX DNA_Academ 318345 318578 96 - . . scaffold621 GLEAN promoter 318607 319606 0.709714 + . ID=CGI_10017678; scaffold621 GLEAN mRNA 319607 320974 0.709714 + . ID=CGI_10017678; scaffold621 GLEAN mRNA 323945 331998 0.386043 - . ID=CGI_10017679; scaffold621 GLEAN promoter 331999 332998 0.386043 - . ID=CGI_10017679; scaffold621 GLEAN promoter 338138 339137 0.999451 + . ID=CGI_10017680; scaffold621 GLEAN promoter 338387 339386 0.999372 + . ID=CGI_10017681; scaffold621 GLEAN promoter 338951 339950 0.999244 + . ID=CGI_10017682; scaffold621 GLEAN mRNA 339138 339377 0.999451 + . ID=CGI_10017680; scaffold621 GLEAN mRNA 339387 339617 0.999372 + . ID=CGI_10017681; scaffold621 GLEAN mRNA 339951 340190 0.999244 + . ID=CGI_10017682; scaffold621 GLEAN promoter 339990 340989 0.618186 + . ID=CGI_10017684; scaffold621 GLEAN mRNA 340527 340867 0.671875 - . ID=CGI_10017683; scaffold621 GLEAN promoter 340868 341867 0.671875 - . ID=CGI_10017683; scaffold621 GLEAN promoter 340960 341959 0.999875 + . ID=CGI_10017686; scaffold621 GLEAN mRNA 340990 341238 0.618186 + . ID=CGI_10017684; scaffold621 GLEAN mRNA 341485 341670 0.997359 - . ID=CGI_10017685; scaffold621 GLEAN promoter 341671 342670 0.997359 - . ID=CGI_10017685; scaffold621 GLEAN mRNA 341960 342627 0.999875 + . ID=CGI_10017686; scaffold621 GLEAN mRNA 342848 343081 0.579809 - . ID=CGI_10017687; scaffold621 GLEAN promoter 343082 344081 0.579809 - . ID=CGI_10017687; scaffold621 WUBlastX LINE_Penelope 349979 350272 47 - . . scaffold621 WUBlastX LINE_Penelope 350352 350645 39 - . . scaffold621 WUBlastX LINE_Penelope 350358 350585 82 - . . scaffold621 TRF Tandem_Repeat 353728 353949 329 + . . scaffold621 TRF Tandem_Repeat 357143 357173 62 + . . scaffold621 WUBlastX LTR_DIRS 359116 359310 127 - . . scaffold621 WUBlastX LTR_DIRS 359320 359532 39 - . . scaffold621 WUBlastX LTR_DIRS 359353 359532 66 - . . scaffold621 GLEAN mRNA 360060 382748 0.996965 - . ID=CGI_10017688; scaffold621 WUBlastX LTR_DIRS 360334 360450 41 - . . scaffold621 WUBlastX LTR_DIRS 360334 360546 35 - . . scaffold621 WUBlastX LTR_DIRS 360524 360820 66 - . . scaffold621 WUBlastX LTR_DIRS 360825 360995 52 - . . scaffold621 TRF Tandem_Repeat 371842 372505 729 + . . scaffold621 TRF Tandem_Repeat 374177 374227 75 + . . scaffold621 TRF Tandem_Repeat 374177 374218 57 + . . scaffold621 TRF Tandem_Repeat 374185 374235 68 + . . scaffold621 TRF Tandem_Repeat 375221 375255 70 + . . scaffold621 GLEAN promoter 382749 383748 0.996965 - . ID=CGI_10017688; scaffold621 WUBlastX LTR_DIRS 384822 385226 52 + . . scaffold621 TRF Tandem_Repeat 390065 390242 106 + . . scaffold621 TRF Tandem_Repeat 396762 396984 85 + . . scaffold621 TRF Tandem_Repeat 396781 396947 106 + . . scaffold621 TRF Tandem_Repeat 396792 396879 79 + . . scaffold621 TRF Tandem_Repeat 397047 397097 93 + . . scaffold621 TRF Tandem_Repeat 405102 405145 88 + . . scaffold621 WUBlastX LTR_Gypsy 427576 427806 80 + . . scaffold621 WUBlastX LTR_Gypsy-Cigr 427802 428257 45 + . . scaffold621 WUBlastX LTR_Gypsy 427970 428338 54 + . . scaffold621 WUBlastX LTR_Gypsy 428241 428513 102 + . . scaffold621 WUBlastX LTR_Gypsy 428301 428519 115 + . . scaffold621 WUBlastX LTR_Gypsy 428447 428626 25 + . . scaffold621 WUBlastX LTR_Gypsy 428557 428676 25 + . . scaffold621 WUBlastX LTR_Gypsy 428690 429046 102 + . . scaffold621 WUBlastX LTR_Gypsy 428747 429148 112 + . . scaffold621 WUBlastX LTR_Gypsy 428771 429100 124 + . . scaffold621 WUBlastX LTR_Gypsy 429139 429561 150 + . . scaffold621 WUBlastX LTR_Gypsy-Cigr 429139 429456 160 + . . scaffold621 WUBlastX LTR_Gypsy 430049 430093 24 + . . scaffold621 WUBlastX LTR_Gypsy 430255 430347 29 + . . scaffold621 WUBlastX LINE_CR1 437992 438882 501 - . . scaffold621 WUBlastX LINE_CR1 438136 439014 708 - . . scaffold621 WUBlastX LINE_CR1 438157 439302 622 - . . scaffold621 WUBlastX LINE_CR1 439848 439967 29 - . . scaffold621 TRF Tandem_Repeat 446857 446935 97 + . . scaffold621 GLEAN mRNA 449745 470339 0.28032 - . ID=CGI_10017690; scaffold621 TRF Tandem_Repeat 458525 458573 64 + . . scaffold621 GLEAN promoter 464309 465308 1 + . ID=CGI_10017691; scaffold621 GLEAN mRNA 465309 474640 1 + . ID=CGI_10017691; scaffold621 GLEAN promoter 470340 471339 0.28032 - . ID=CGI_10017690; scaffold621 TRF Tandem_Repeat 471472 471506 70 + . . scaffold621 TRF Tandem_Repeat 473778 473824 94 + . . scaffold621 GLEAN mRNA 476291 480179 1 - . ID=CGI_10017692; scaffold621 GLEAN promoter 480180 481179 1 - . ID=CGI_10017692; scaffold621 GLEAN promoter 480897 481896 0.999661 + . ID=CGI_10017693; scaffold621 GLEAN mRNA 481897 482645 0.999661 + . ID=CGI_10017693; scaffold621 TRF Tandem_Repeat 485687 485727 82 + . . scaffold621 WUBlastX LINE_RTE-X 489106 489603 113 - . . scaffold621 WUBlastX LINE_L2 489181 490398 186 - . . scaffold621 WUBlastX LINE_RTE-X 489379 490404 356 - . . scaffold621 WUBlastX LINE_RTE-X 489622 491307 514 - . . scaffold621 WUBlastX LINE_RTE-X 491303 491494 51 - . . scaffold621 WUBlastX LINE_RTE-X 491390 491524 48 - . . scaffold621 WUBlastX LINE_RTE-X 511264 512595 340 - . . scaffold621 WUBlastX LINE_RTE-X 512588 513034 71 - . . scaffold621 WUBlastX LINE_RTE-X 512675 513031 91 - . . scaffold621 TRF Tandem_Repeat 513522 513562 75 + . . scaffold622 GLEAN promoter 1 95 0.499919 + . ID=CGI_10018188; scaffold622 GLEAN mRNA 96 9169 0.499919 + . ID=CGI_10018188; scaffold622 TRF Tandem_Repeat 2092 2124 50 + . . scaffold622 TRF Tandem_Repeat 31690 31756 80 + . . scaffold622 TRF Tandem_Repeat 31697 31756 88 + . . scaffold622 GLEAN promoter 34928 35927 1 + . ID=CGI_10018189; scaffold622 GLEAN mRNA 35928 36833 1 + . ID=CGI_10018189; scaffold622 TRF Tandem_Repeat 50697 50762 116 + . . scaffold622 GLEAN mRNA 51756 56061 0.648556 - . ID=CGI_10018190; scaffold622 TRF Tandem_Repeat 53566 53602 74 + . . scaffold622 GLEAN promoter 56062 57061 0.648556 - . ID=CGI_10018190; scaffold622 TRF Tandem_Repeat 58576 58724 82 + . . scaffold622 TRF Tandem_Repeat 58615 58724 85 + . . scaffold622 TRF Tandem_Repeat 59482 59627 150 + . . scaffold622 TRF Tandem_Repeat 61166 61948 1557 + . . scaffold622 TRF Tandem_Repeat 62570 63291 558 + . . scaffold622 GLEAN mRNA 64432 81686 0.374698 - . ID=CGI_10018191; scaffold622 TRF Tandem_Repeat 77576 78075 826 + . . scaffold622 TRF Tandem_Repeat 79473 79821 563 + . . scaffold622 GLEAN promoter 81687 82686 0.374698 - . ID=CGI_10018191; scaffold622 GLEAN promoter 81771 82770 0.777732 + . ID=CGI_10018192; scaffold622 TRF Tandem_Repeat 82255 82346 103 + . . scaffold622 GLEAN mRNA 82771 85704 0.777732 + . ID=CGI_10018192; scaffold622 GLEAN mRNA 87342 91855 1 - . ID=CGI_10018193; scaffold622 GLEAN promoter 91236 92235 0.980022 + . ID=CGI_10018194; scaffold622 GLEAN promoter 91856 92855 1 - . ID=CGI_10018193; scaffold622 GLEAN mRNA 92236 100709 0.980022 + . ID=CGI_10018194; scaffold622 GLEAN mRNA 102660 105977 0.889923 - . ID=CGI_10018195; scaffold622 GLEAN promoter 104341 105340 0.999949 + . ID=CGI_10018196; scaffold622 GLEAN mRNA 105341 118970 0.999949 + . ID=CGI_10018196; scaffold622 GLEAN promoter 105978 106977 0.889923 - . ID=CGI_10018195; scaffold622 TRF Tandem_Repeat 114876 115125 331 + . . scaffold622 TRF Tandem_Repeat 114893 115186 261 + . . scaffold622 GLEAN promoter 118690 119689 1 + . ID=CGI_10018197; scaffold622 GLEAN mRNA 119690 142728 1 + . ID=CGI_10018197; scaffold622 GLEAN mRNA 121135 123468 1 - . ID=CGI_10018198; scaffold622 GLEAN promoter 123469 124468 1 - . ID=CGI_10018198; scaffold622 TRF Tandem_Repeat 135626 135735 96 + . . scaffold622 TRF Tandem_Repeat 135693 135737 81 + . . scaffold622 TRF Tandem_Repeat 146670 146720 102 + . . scaffold622 GLEAN mRNA 163698 165716 0.992021 - . ID=CGI_10018199; scaffold622 GLEAN promoter 165717 166716 0.992021 - . ID=CGI_10018199; scaffold622 WUBlastX LINE_CR1-L2 180457 181035 29 + . . scaffold622 WUBlastX LINE_L2 180613 181035 118 + . . scaffold622 TRF Tandem_Repeat 183336 183379 79 + . . scaffold622 WUBlastX LTR_Gypsy 186028 186303 87 - . . scaffold622 WUBlastX LTR_Gypsy 186082 186420 195 - . . scaffold622 WUBlastX LTR_Gypsy 186465 187034 225 - . . scaffold622 WUBlastX LTR_Gypsy 187498 187917 123 - . . scaffold622 TRF Tandem_Repeat 188222 188291 77 + . . scaffold622 WUBlastX LINE_L2 190661 191101 27 + . . scaffold622 WUBlastX LINE_RTE-BovB 190826 191107 76 + . . scaffold622 WUBlastX LINE_L2 190880 191164 104 + . . scaffold622 WUBlastX LTR_Gypsy-Cigr 191963 192352 65 - . . scaffold622 WUBlastX LTR_Gypsy 192029 192376 83 - . . scaffold622 WUBlastX LTR_Gypsy-Cigr 192481 193242 32 - . . scaffold622 WUBlastX LTR_Gypsy-Cigr 192742 193185 50 - . . scaffold622 GLEAN mRNA 193296 194097 0.723893 - . ID=CGI_10018201; scaffold622 GLEAN promoter 194098 195097 0.723893 - . ID=CGI_10018201; scaffold622 WUBlastX LINE_L1-Tx1 194547 194717 62 + . . scaffold622 WUBlastX LINE_L1-Tx1 194574 194717 64 + . . scaffold622 WUBlastX LINE_L1-Tx1 194713 196269 840 + . . scaffold622 WUBlastX LINE_L1-Tx1 196190 198241 288 + . . scaffold622 WUBlastX LINE_L1-Tx1 196262 196861 306 + . . scaffold622 TRF Tandem_Repeat 203059 203149 87 + . . scaffold622 TRF Tandem_Repeat 203411 203445 70 + . . scaffold622 GLEAN mRNA 222298 225947 0.999563 - . ID=CGI_10018202; scaffold622 GLEAN promoter 225948 226947 0.999563 - . ID=CGI_10018202; scaffold622 GLEAN promoter 253087 254086 0.989376 + . ID=CGI_10018203; scaffold622 GLEAN mRNA 254087 256727 0.989376 + . ID=CGI_10018203; scaffold622 GLEAN promoter 257127 258126 0.272001 + . ID=CGI_10018205; scaffold622 GLEAN mRNA 257132 262646 0.571796 - . ID=CGI_10018204; scaffold622 GLEAN mRNA 258127 271239 0.272001 + . ID=CGI_10018205; scaffold622 TRF Tandem_Repeat 259764 259790 54 + . . scaffold622 GLEAN promoter 262647 263646 0.571796 - . ID=CGI_10018204; scaffold622 TRF Tandem_Repeat 269743 269783 59 + . . scaffold622 TRF Tandem_Repeat 278097 278399 381 + . . scaffold622 TRF Tandem_Repeat 281472 281510 78 + . . scaffold622 GLEAN mRNA 283414 291833 0.660895 - . ID=CGI_10018207; scaffold622 TRF Tandem_Repeat 288224 288366 213 + . . scaffold622 GLEAN promoter 291834 292833 0.660895 - . ID=CGI_10018207; scaffold622 TRF Tandem_Repeat 296647 296702 51 + . . scaffold622 TRF Tandem_Repeat 299718 299787 106 + . . scaffold622 TRF Tandem_Repeat 299718 299775 71 + . . scaffold622 TRF Tandem_Repeat 299729 299787 84 + . . scaffold622 GLEAN promoter 300963 301962 0.776794 + . ID=CGI_10018208; scaffold622 GLEAN mRNA 301963 302319 0.776794 + . ID=CGI_10018208; scaffold622 GLEAN mRNA 308008 319722 0.586807 - . ID=CGI_10018209; scaffold622 WUBlastX DNA_Crypton 309060 309362 69 + . . scaffold622 TRF Tandem_Repeat 312449 312475 54 + . . scaffold622 GLEAN promoter 319723 320722 0.586807 - . ID=CGI_10018209; scaffold622 WUBlastX LINE_L1-Tx1 321388 321894 21 - . . scaffold622 WUBlastX LINE_L1-Tx1 321664 321888 59 - . . scaffold622 WUBlastX LINE_L1-Tx1 321712 321912 61 - . . scaffold622 WUBlastX LINE_L1-Tx1 321965 322177 37 - . . scaffold622 WUBlastX LINE_L1-Tx1 322336 323670 534 - . . scaffold622 WUBlastX LINE_L1-Tx1 323640 325034 499 - . . scaffold622 GLEAN promoter 326680 327679 0.999825 + . ID=CGI_10018210; scaffold622 GLEAN mRNA 327680 330571 0.999825 + . ID=CGI_10018210; scaffold622 GLEAN promoter 333092 334091 0.544628 + . ID=CGI_10018211; scaffold622 GLEAN mRNA 334092 339902 0.544628 + . ID=CGI_10018211; scaffold622 TRF Tandem_Repeat 336491 337449 1366 + . . scaffold622 TRF Tandem_Repeat 345038 345082 81 + . . scaffold622 TRF Tandem_Repeat 346328 346372 90 + . . scaffold622 GLEAN mRNA 372385 377019 1 - . ID=CGI_10018212; scaffold622 GLEAN promoter 377020 378019 1 - . ID=CGI_10018212; scaffold622 GLEAN promoter 377451 378450 0.999351 + . ID=CGI_10018213; scaffold622 GLEAN mRNA 378451 385431 0.999351 + . ID=CGI_10018213; scaffold622 WUBlastX LINE_RTE-X 381934 383508 634 + . . scaffold622 TRF Tandem_Repeat 383847 383871 50 + . . scaffold622 TRF Tandem_Repeat 384784 384844 122 + . . scaffold622 GLEAN promoter 387877 388876 0.998365 + . ID=CGI_10018214; scaffold622 GLEAN mRNA 388877 398399 0.998365 + . ID=CGI_10018214; scaffold622 TRF Tandem_Repeat 390518 390587 122 + . . scaffold622 TRF Tandem_Repeat 390653 390708 51 + . . scaffold622 WUBlastX LINE_RTE-X 394376 394555 101 + . . scaffold622 TRF Tandem_Repeat 395366 396124 1035 + . . scaffold622 TRF Tandem_Repeat 396210 396280 106 + . . scaffold622 TRF Tandem_Repeat 407329 408011 962 + . . scaffold622 WUBlastX LINE_L1-Tx1 410097 411008 123 - . . scaffold622 WUBlastX LINE_L1-Tx1 411050 412210 386 - . . scaffold622 WUBlastX LINE_L1-Tx1 411611 412237 441 - . . scaffold622 WUBlastX LINE_L1 411671 412360 152 - . . scaffold622 WUBlastX LINE_L1-Tx1 412209 412502 143 - . . scaffold622 WUBlastX LINE_L1-Tx1 412534 412893 84 - . . scaffold622 WUBlastX LINE_L1-Tx1 412534 412779 87 - . . scaffold622 WUBlastX LINE_L1-Tx1 412880 413245 199 - . . scaffold622 WUBlastX LINE_L1-Tx1 413214 413570 128 - . . scaffold622 WUBlastX LINE_L1-Tx1 413226 413633 86 - . . scaffold622 WUBlastX LINE_L1-Tx1 413593 413724 38 - . . scaffold622 WUBlastX LINE_L1 413998 414420 182 - . . scaffold622 TRF Tandem_Repeat 419837 419883 94 + . . scaffold622 GLEAN promoter 420136 421135 0.98826 + . ID=CGI_10018215; scaffold622 TRF Tandem_Repeat 420777 420836 120 + . . scaffold622 GLEAN mRNA 421136 424262 0.98826 + . ID=CGI_10018215; scaffold622 TRF Tandem_Repeat 423821 424051 426 + . . scaffold622 TRF Tandem_Repeat 425978 426660 879 + . . scaffold622 TRF Tandem_Repeat 427609 428704 1240 + . . scaffold622 TRF Tandem_Repeat 434969 435016 96 + . . scaffold622 GLEAN promoter 436711 437710 1 + . ID=CGI_10018216; scaffold622 GLEAN mRNA 437711 440344 1 + . ID=CGI_10018216; scaffold622 GLEAN mRNA 442317 444221 0.836238 - . ID=CGI_10018217; scaffold622 GLEAN promoter 444222 445221 0.836238 - . ID=CGI_10018217; scaffold622 GLEAN promoter 448890 449889 0.65135 + . ID=CGI_10018218; scaffold622 GLEAN mRNA 449890 456952 0.65135 + . ID=CGI_10018218; scaffold622 TRF Tandem_Repeat 460453 460495 79 + . . scaffold622 GLEAN promoter 461232 462231 0.57519 + . ID=CGI_10018219; scaffold622 GLEAN mRNA 462232 465611 0.57519 + . ID=CGI_10018219; scaffold622 GLEAN promoter 466940 467939 0.575283 + . ID=CGI_10018220; scaffold622 GLEAN mRNA 467940 475730 0.575283 + . ID=CGI_10018220; scaffold622 TRF Tandem_Repeat 480331 480453 57 + . . scaffold622 TRF Tandem_Repeat 480369 480515 73 + . . scaffold622 TRF Tandem_Repeat 481480 482252 825 + . . scaffold622 TRF Tandem_Repeat 482704 482890 275 + . . scaffold622 GLEAN mRNA 485665 490074 1 - . ID=CGI_10018221; scaffold622 GLEAN promoter 490075 491074 1 - . ID=CGI_10018221; scaffold622 GLEAN promoter 490677 491676 0.863771 + . ID=CGI_10018222; scaffold622 GLEAN mRNA 491677 509350 0.863771 + . ID=CGI_10018222; scaffold622 TRF Tandem_Repeat 494806 494843 60 + . . scaffold622 TRF Tandem_Repeat 494981 495731 967 + . . scaffold622 TRF Tandem_Repeat 507783 507951 266 + . . scaffold622 TRF Tandem_Repeat 507953 508143 285 + . . scaffold622 GLEAN mRNA 514199 533510 0.999795 - . ID=CGI_10018223; scaffold622 TRF Tandem_Repeat 530396 531158 1004 + . . scaffold622 TRF Tandem_Repeat 531320 531369 63 + . . scaffold622 GLEAN promoter 533511 534510 0.999795 - . ID=CGI_10018223; scaffold622 GLEAN mRNA 534477 536758 1 - . ID=CGI_10018224; scaffold622 TRF Tandem_Repeat 535056 535087 55 + . . scaffold622 GLEAN promoter 536759 536825 1 - . ID=CGI_10018224; scaffold625 TRF Tandem_Repeat 19505 19543 78 + . . scaffold625 GLEAN mRNA 22945 38439 0.969836 - . ID=CGI_10023394; scaffold625 TRF Tandem_Repeat 25208 25234 54 + . . scaffold625 TRF Tandem_Repeat 27818 27996 250 + . . scaffold625 TRF Tandem_Repeat 27822 27990 209 + . . scaffold625 TRF Tandem_Repeat 27908 27985 54 + . . scaffold625 TRF Tandem_Repeat 31272 31303 55 + . . scaffold625 TRF Tandem_Repeat 32779 33275 748 + . . scaffold625 GLEAN promoter 38440 39439 0.969836 - . ID=CGI_10023394; scaffold625 TRF Tandem_Repeat 43416 43505 69 + . . scaffold625 TRF Tandem_Repeat 43416 43510 69 + . . scaffold625 TRF Tandem_Repeat 43443 43501 70 + . . scaffold625 GLEAN promoter 44107 45106 0.999107 + . ID=CGI_10023395; scaffold625 GLEAN mRNA 45107 61567 0.999107 + . ID=CGI_10023395; scaffold625 TRF Tandem_Repeat 51315 51469 283 + . . scaffold625 TRF Tandem_Repeat 56958 56998 50 + . . scaffold625 TRF Tandem_Repeat 59632 59672 50 + . . scaffold625 GLEAN promoter 60573 61572 0.101218 + . ID=CGI_10023396; scaffold625 GLEAN mRNA 61573 68540 0.101218 + . ID=CGI_10023396; scaffold625 WUBlastX LTR_Gypsy 64831 65205 83 + . . scaffold625 GLEAN mRNA 71553 73142 0.999984 - . ID=CGI_10023397; scaffold625 GLEAN promoter 73143 74142 0.999984 - . ID=CGI_10023397; scaffold625 GLEAN mRNA 73385 84351 0.990769 - . ID=CGI_10023398; scaffold625 TRF Tandem_Repeat 77573 77605 57 + . . scaffold625 GLEAN promoter 84352 85351 0.990769 - . ID=CGI_10023398; scaffold625 GLEAN promoter 85851 86850 0.998822 + . ID=CGI_10023399; scaffold625 GLEAN mRNA 86851 87843 0.998822 + . ID=CGI_10023399; scaffold625 GLEAN promoter 88259 89258 1 + . ID=CGI_10023400; scaffold625 GLEAN mRNA 89259 94251 1 + . ID=CGI_10023400; scaffold625 GLEAN promoter 93444 94443 1 + . ID=CGI_10023401; scaffold625 GLEAN mRNA 94444 109721 1 + . ID=CGI_10023401; scaffold625 GLEAN mRNA 94886 105009 0.920951 - . ID=CGI_10023402; scaffold625 TRF Tandem_Repeat 95079 95235 126 + . . scaffold625 TRF Tandem_Repeat 95241 95473 164 + . . scaffold625 TRF Tandem_Repeat 95241 95564 176 + . . scaffold625 TRF Tandem_Repeat 95479 95564 101 + . . scaffold625 TRF Tandem_Repeat 98945 99953 1013 + . . scaffold625 GLEAN promoter 105010 106009 0.920951 - . ID=CGI_10023402; scaffold625 TRF Tandem_Repeat 112736 112802 50 + . . scaffold625 TRF Tandem_Repeat 113061 113106 92 + . . scaffold625 GLEAN mRNA 115954 121412 0.999736 - . ID=CGI_10023403; scaffold625 GLEAN promoter 121413 122412 0.999736 - . ID=CGI_10023403; scaffold625 TRF Tandem_Repeat 124550 124648 153 + . . scaffold625 TRF Tandem_Repeat 124954 124978 50 + . . scaffold625 TRF Tandem_Repeat 125356 125389 68 + . . scaffold625 TRF Tandem_Repeat 126693 126975 386 + . . scaffold625 TRF Tandem_Repeat 126713 126972 322 + . . scaffold625 TRF Tandem_Repeat 128965 129024 120 + . . scaffold625 GLEAN mRNA 131058 133638 0.999935 - . ID=CGI_10023404; scaffold625 GLEAN promoter 133639 134638 0.999935 - . ID=CGI_10023404; scaffold625 GLEAN mRNA 133677 140220 0.811403 - . ID=CGI_10023405; scaffold625 GLEAN promoter 140221 141220 0.811403 - . ID=CGI_10023405; scaffold625 GLEAN promoter 140483 141482 0.204094 + . ID=CGI_10023406; scaffold625 GLEAN mRNA 141483 147436 0.204094 + . ID=CGI_10023406; scaffold625 TRF Tandem_Repeat 142673 144114 1521 + . . scaffold625 TRF Tandem_Repeat 143176 143444 70 + . . scaffold625 GLEAN promoter 149344 150343 0.983385 + . ID=CGI_10023407; scaffold625 GLEAN mRNA 150344 160492 0.983385 + . ID=CGI_10023407; scaffold625 TRF Tandem_Repeat 153355 153391 65 + . . scaffold625 TRF Tandem_Repeat 160269 161572 2093 + . . scaffold625 WUBlastX LINE_RTE-X 163694 163993 48 - . . scaffold625 WUBlastX LINE_RTE-X 163757 163996 50 - . . scaffold625 WUBlastX LINE_RTE-X 163805 164032 41 - . . scaffold625 WUBlastX LINE_RTE-X 164196 164255 21 - . . scaffold625 WUBlastX LINE_RTE-X 164317 164373 20 - . . scaffold625 WUBlastX LINE_RTE-BovB 164394 164510 44 - . . scaffold625 WUBlastX LINE_RTE-X 164448 164570 41 - . . scaffold625 WUBlastX LINE_RTE-X 164558 164731 36 - . . scaffold625 WUBlastX LINE_RTE-BovB 164600 164731 52 - . . scaffold625 WUBlastX LINE_RTE-X 165310 165360 22 - . . scaffold625 TRF Tandem_Repeat 179373 179920 321 + . . scaffold625 GLEAN promoter 193182 194181 0.941643 + . ID=CGI_10023408; scaffold625 GLEAN mRNA 194182 205117 0.941643 + . ID=CGI_10023408; scaffold625 TRF Tandem_Repeat 197963 198310 209 + . . scaffold625 TRF Tandem_Repeat 197971 198228 241 + . . scaffold625 TRF Tandem_Repeat 198327 198740 250 + . . scaffold625 TRF Tandem_Repeat 198352 198617 176 + . . scaffold625 TRF Tandem_Repeat 209941 209989 98 + . . scaffold625 TRF Tandem_Repeat 223099 223143 90 + . . scaffold625 TRF Tandem_Repeat 226408 226482 96 + . . scaffold625 GLEAN promoter 229285 230284 0.650991 + . ID=CGI_10023409; scaffold625 GLEAN mRNA 230285 232681 0.650991 + . ID=CGI_10023409; scaffold625 GLEAN promoter 234852 235851 1 + . ID=CGI_10023410; scaffold625 GLEAN mRNA 235852 252182 1 + . ID=CGI_10023410; scaffold625 TRF Tandem_Repeat 237158 237195 69 + . . scaffold625 TRF Tandem_Repeat 240807 240851 81 + . . scaffold625 TRF Tandem_Repeat 245914 246060 73 + . . scaffold625 TRF Tandem_Repeat 245976 246124 97 + . . scaffold625 TRF Tandem_Repeat 247704 247834 244 + . . scaffold625 TRF Tandem_Repeat 251928 252921 1472 + . . scaffold625 TRF Tandem_Repeat 251928 252919 1334 + . . scaffold625 GLEAN mRNA 253419 256662 0.753072 - . ID=CGI_10023411; scaffold625 GLEAN promoter 256663 257662 0.753072 - . ID=CGI_10023411; scaffold625 TRF Tandem_Repeat 265039 265078 71 + . . scaffold625 TRF Tandem_Repeat 274200 276188 2817 + . . scaffold625 WUBlastX LINE_CR1 304797 306677 203 + . . scaffold625 WUBlastX LINE_RTE-X 305142 307304 685 + . . scaffold625 GLEAN promoter 308940 309939 1 + . ID=CGI_10023412; scaffold625 GLEAN mRNA 309940 311315 1 + . ID=CGI_10023412; scaffold625 TRF Tandem_Repeat 310209 310245 56 + . . scaffold625 GLEAN promoter 315113 316112 0.999996 + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 315266 315365 101 + . . scaffold625 GLEAN mRNA 316113 329208 0.999996 + . ID=CGI_10023413; scaffold625 TRF Tandem_Repeat 317466 317502 74 + . . scaffold625 TRF Tandem_Repeat 318127 318447 462 + . . scaffold625 TRF Tandem_Repeat 318127 318447 545 + . . scaffold625 TRF Tandem_Repeat 318590 318669 133 + . . scaffold625 TRF Tandem_Repeat 323266 323316 102 + . . scaffold625 TRF Tandem_Repeat 326827 327824 1732 + . . scaffold625 TRF Tandem_Repeat 331201 331422 121 + . . scaffold625 TRF Tandem_Repeat 331217 331380 158 + . . scaffold625 TRF Tandem_Repeat 332583 332727 200 + . . scaffold625 TRF Tandem_Repeat 332603 332716 60 + . . scaffold625 TRF Tandem_Repeat 332612 332700 79 + . . scaffold625 TRF Tandem_Repeat 333217 333342 220 + . . scaffold625 TRF Tandem_Repeat 333813 333881 68 + . . scaffold625 GLEAN mRNA 334649 343778 0.993907 - . ID=CGI_10023414; scaffold625 TRF Tandem_Repeat 336114 337110 1895 + . . scaffold625 TRF Tandem_Repeat 338847 339388 205 + . . scaffold625 TRF Tandem_Repeat 339148 339465 384 + . . scaffold625 TRF Tandem_Repeat 339600 340747 1046 + . . scaffold625 TRF Tandem_Repeat 339606 340438 1199 + . . scaffold625 TRF Tandem_Repeat 340541 340734 309 + . . scaffold625 TRF Tandem_Repeat 341223 341743 171 + . . scaffold625 TRF Tandem_Repeat 341866 341923 116 + . . scaffold625 TRF Tandem_Repeat 341921 341959 69 + . . scaffold625 GLEAN promoter 343779 344778 0.993907 - . ID=CGI_10023414; scaffold625 GLEAN promoter 351737 352736 0.969452 + . ID=CGI_10023415; scaffold625 GLEAN mRNA 352737 353207 0.969452 + . ID=CGI_10023415; scaffold625 TRF Tandem_Repeat 353974 354210 327 + . . scaffold625 TRF Tandem_Repeat 354561 355508 511 + . . scaffold625 TRF Tandem_Repeat 358715 358761 94 + . . scaffold625 TRF Tandem_Repeat 359044 360286 812 + . . scaffold625 TRF Tandem_Repeat 359044 360286 680 + . . scaffold625 TRF Tandem_Repeat 359045 360237 821 + . . scaffold625 TRF Tandem_Repeat 359119 359207 54 + . . scaffold625 TRF Tandem_Repeat 378792 379244 451 + . . scaffold625 WUBlastX LINE_L1-Tx1 388766 389119 87 - . . scaffold625 WUBlastX LINE_L1 389676 389816 41 - . . scaffold625 TRF Tandem_Repeat 391191 391346 177 + . . scaffold625 TRF Tandem_Repeat 391227 391359 225 + . . scaffold625 GLEAN mRNA 391354 394308 0.772897 - . ID=CGI_10023416; scaffold625 GLEAN promoter 394309 395308 0.772897 - . ID=CGI_10023416; scaffold625 TRF Tandem_Repeat 395097 395245 77 + . . scaffold625 TRF Tandem_Repeat 401874 401932 118 + . . scaffold625 TRF Tandem_Repeat 429759 430937 1082 + . . scaffold625 TRF Tandem_Repeat 429783 430937 999 + . . scaffold625 TRF Tandem_Repeat 429783 430937 1001 + . . scaffold625 TRF Tandem_Repeat 429783 430916 817 + . . scaffold625 TRF Tandem_Repeat 431794 431919 73 + . . scaffold625 TRF Tandem_Repeat 432646 433167 868 + . . scaffold625 GLEAN promoter 435343 436342 0.632926 + . ID=CGI_10023417; scaffold625 GLEAN mRNA 436343 455033 0.632926 + . ID=CGI_10023417; scaffold625 TRF Tandem_Repeat 437743 437987 287 + . . scaffold625 TRF Tandem_Repeat 441300 441417 191 + . . scaffold625 TRF Tandem_Repeat 447026 447073 96 + . . scaffold625 TRF Tandem_Repeat 452796 453040 355 + . . scaffold625 WUBlastX LINE_L1-Tx1 456671 456814 29 - . . scaffold625 WUBlastX LINE_L1 456680 456844 26 - . . scaffold625 WUBlastX LINE_L1 456695 456808 44 - . . scaffold625 WUBlastX LINE_L1 456870 457010 46 - . . scaffold625 WUBlastX LINE_L1-Tx1 456985 457200 96 - . . scaffold625 WUBlastX LINE_L1-Tx1 457018 457248 85 - . . scaffold625 WUBlastX LINE_L1 457033 457200 109 - . . scaffold625 WUBlastX LINE_L1-Tx1 457707 457901 25 - . . scaffold625 GLEAN mRNA 458136 482200 0.980546 - . ID=CGI_10023418; scaffold625 TRF Tandem_Repeat 466062 466116 110 + . . scaffold625 TRF Tandem_Repeat 466874 467107 405 + . . scaffold625 TRF Tandem_Repeat 471436 471462 54 + . . scaffold625 TRF Tandem_Repeat 472351 472402 50 + . . scaffold625 TRF Tandem_Repeat 472622 472770 86 + . . scaffold625 TRF Tandem_Repeat 472686 472817 61 + . . scaffold625 TRF Tandem_Repeat 473816 474552 721 + . . scaffold625 TRF Tandem_Repeat 480501 480679 238 + . . scaffold625 GLEAN promoter 481663 482662 0.777732 + . ID=CGI_10023419; scaffold625 GLEAN promoter 482201 483200 0.980546 - . ID=CGI_10023418; scaffold625 GLEAN mRNA 482663 489533 0.777732 + . ID=CGI_10023419; scaffold625 GLEAN mRNA 494757 502265 0.999676 - . ID=CGI_10023420; scaffold625 WUBlastX LINE_RTE-BovB 496300 496509 37 + . . scaffold625 GLEAN promoter 502266 503265 0.999676 - . ID=CGI_10023420; scaffold625 GLEAN promoter 505483 506482 0.908049 + . ID=CGI_10023421; scaffold625 GLEAN mRNA 506483 512179 0.908049 + . ID=CGI_10023421; scaffold625 TRF Tandem_Repeat 515145 515340 177 + . . scaffold625 WUBlastX DNA_Sola 518710 519135 64 + . . scaffold625 WUBlastX DNA_Sola 518942 519571 151 + . . scaffold625 WUBlastX DNA_Sola 519234 519797 45 + . . scaffold625 WUBlastX DNA_En-Spm 521534 521776 42 + . . scaffold625 WUBlastX DNA_En-Spm 521573 521776 53 + . . scaffold625 WUBlastX DNA_En-Spm 521591 521884 33 + . . scaffold625 GLEAN promoter 526080 527079 0.830222 + . ID=CGI_10023422; scaffold625 GLEAN mRNA 527080 552175 0.830222 + . ID=CGI_10023422; scaffold625 GLEAN mRNA 542348 556396 0.999027 - . ID=CGI_10023423; scaffold625 GLEAN promoter 556397 557396 0.999027 - . ID=CGI_10023423; scaffold625 WUBlastX LINE_L2 558049 558366 45 - . . scaffold625 WUBlastX LINE_L2 558250 558342 46 - . . scaffold625 WUBlastX LINE_L2 558309 558440 53 - . . scaffold625 WUBlastX LINE_L2 558336 558461 43 - . . scaffold625 GLEAN promoter 559634 560633 0.999407 + . ID=CGI_10023424; scaffold625 GLEAN mRNA 560634 564740 0.999407 + . ID=CGI_10023424; scaffold625 TRF Tandem_Repeat 562066 562102 74 + . . scaffold625 TRF Tandem_Repeat 571847 571890 88 + . . scaffold625 GLEAN mRNA 587493 614849 0.872449 - . ID=CGI_10023425; scaffold625 GLEAN promoter 592175 593174 0.878872 + . ID=CGI_10023426; scaffold625 GLEAN mRNA 593175 626759 0.878872 + . ID=CGI_10023426; scaffold625 TRF Tandem_Repeat 593872 594018 113 + . . scaffold625 WUBlastX LINE_CR1-L2 600761 601024 64 - . . scaffold625 WUBlastX LINE_L2 601027 602493 881 - . . scaffold625 WUBlastX LINE_Jockey 601375 602718 208 - . . scaffold625 TRF Tandem_Repeat 605517 605955 587 + . . scaffold625 TRF Tandem_Repeat 610485 611267 846 + . . scaffold625 TRF Tandem_Repeat 610514 611267 1011 + . . scaffold625 GLEAN promoter 614850 615849 0.872449 - . ID=CGI_10023425; scaffold625 TRF Tandem_Repeat 625755 625825 76 + . . scaffold625 WUBlastX LINE_R2-Hero 628737 628871 101 + . . scaffold625 WUBlastX LINE_R2-Hero 628862 629047 117 + . . scaffold625 GLEAN promoter 629275 630274 0.593316 + . ID=CGI_10023427; scaffold625 GLEAN mRNA 630275 636369 0.593316 + . ID=CGI_10023427; scaffold625 TRF Tandem_Repeat 638137 638202 82 + . . scaffold625 TRF Tandem_Repeat 638142 638199 73 + . . scaffold625 GLEAN mRNA 642551 651703 1 - . ID=CGI_10023428; scaffold625 GLEAN promoter 651187 652186 1 + . ID=CGI_10023429; scaffold625 GLEAN promoter 651704 652703 1 - . ID=CGI_10023428; scaffold625 GLEAN mRNA 652187 658453 1 + . ID=CGI_10023429; scaffold625 GLEAN mRNA 660953 675922 0.820405 - . ID=CGI_10023430; scaffold625 TRF Tandem_Repeat 665218 665302 116 + . . scaffold625 WUBlastX LINE_L1-Tx1 669048 669491 109 - . . scaffold625 WUBlastX LINE_L1-Tx1 669060 669629 48 - . . scaffold625 WUBlastX LINE_L1-Tx1 669180 669491 139 - . . scaffold625 WUBlastX LINE_L1 669258 669542 82 - . . scaffold625 GLEAN promoter 671037 672036 0.999676 + . ID=CGI_10023431; scaffold625 GLEAN mRNA 672037 683914 0.999676 + . ID=CGI_10023431; scaffold625 GLEAN promoter 675923 676922 0.820405 - . ID=CGI_10023430; scaffold625 TRF Tandem_Repeat 676917 676990 103 + . . scaffold625 GLEAN mRNA 678124 678330 0.776794 - . ID=CGI_10023432; scaffold625 GLEAN promoter 678331 679330 0.776794 - . ID=CGI_10023432; scaffold625 TRF Tandem_Repeat 679685 679732 78 + . . scaffold625 TRF Tandem_Repeat 680866 681636 950 + . . scaffold625 TRF Tandem_Repeat 681014 681741 991 + . . scaffold625 TRF Tandem_Repeat 690717 690841 185 + . . scaffold625 GLEAN mRNA 692176 702467 0.879994 - . ID=CGI_10023433; scaffold625 TRF Tandem_Repeat 693355 693689 438 + . . scaffold625 WUBlastX DNA_IS 696091 696615 803 + . . scaffold625 TRF Tandem_Repeat 701257 701316 120 + . . scaffold625 GLEAN promoter 702468 703467 0.879994 - . ID=CGI_10023433; scaffold625 GLEAN mRNA 713586 715169 0.999994 - . ID=CGI_10023434; scaffold625 GLEAN promoter 715170 716169 0.999994 - . ID=CGI_10023434; scaffold625 GLEAN mRNA 715249 736728 0.993582 - . ID=CGI_10023435; scaffold625 TRF Tandem_Repeat 728962 729013 104 + . . scaffold625 TRF Tandem_Repeat 733091 733318 420 + . . scaffold625 GLEAN promoter 736729 737728 0.993582 - . ID=CGI_10023435; scaffold625 GLEAN mRNA 738561 745266 0.999978 - . ID=CGI_10023436; scaffold625 TRF Tandem_Repeat 742094 742509 530 + . . scaffold625 GLEAN promoter 745267 746266 0.999978 - . ID=CGI_10023436; scaffold625 GLEAN mRNA 750522 771270 0.999954 - . ID=CGI_10023437; scaffold625 WUBlastX LTR_Gypsy 760829 761002 48 - . . scaffold625 WUBlastX LTR_Gypsy 762204 762314 25 - . . scaffold625 GLEAN promoter 771271 772270 0.999954 - . ID=CGI_10023437; scaffold625 GLEAN mRNA 771353 773545 0.999995 - . ID=CGI_10023438; scaffold625 GLEAN promoter 773546 774545 0.999995 - . ID=CGI_10023438; scaffold625 GLEAN promoter 775651 776650 0.72941 + . ID=CGI_10023439; scaffold625 GLEAN mRNA 776651 805322 0.72941 + . ID=CGI_10023439; scaffold625 GLEAN mRNA 786986 797237 0.937847 - . ID=CGI_10023440; scaffold625 GLEAN promoter 797238 798237 0.937847 - . ID=CGI_10023440; scaffold625 GLEAN promoter 805519 806518 0.999676 + . ID=CGI_10023441; scaffold625 GLEAN mRNA 806519 810071 0.999676 + . ID=CGI_10023441; scaffold625 TRF Tandem_Repeat 807361 807428 127 + . . scaffold625 TRF Tandem_Repeat 807969 808297 414 + . . scaffold625 TRF Tandem_Repeat 807969 808297 394 + . . scaffold625 TRF Tandem_Repeat 808830 809765 1366 + . . scaffold625 GLEAN mRNA 813732 836236 0.830086 - . ID=CGI_10023442; scaffold625 GLEAN promoter 836237 837236 0.830086 - . ID=CGI_10023442; scaffold626 GLEAN mRNA 548 15831 0.991401 - . ID=CGI_10019976; scaffold626 TRF Tandem_Repeat 12912 12969 116 + . . scaffold626 GLEAN promoter 15832 16831 0.991401 - . ID=CGI_10019976; scaffold626 TRF Tandem_Repeat 18562 18614 106 + . . scaffold626 TRF Tandem_Repeat 20121 20266 292 + . . scaffold626 TRF Tandem_Repeat 20430 21086 793 + . . scaffold626 TRF Tandem_Repeat 24000 24047 96 + . . scaffold626 TRF Tandem_Repeat 29709 29754 76 + . . scaffold626 GLEAN mRNA 35526 64232 0.361303 - . ID=CGI_10019977; scaffold626 WUBlastX RC_Helitron 38527 38808 77 - . . scaffold626 WUBlastX RC_Helitron 54144 54431 119 - . . scaffold626 TRF Tandem_Repeat 58533 58570 58 + . . scaffold626 GLEAN promoter 60482 61481 0.819021 + . ID=CGI_10019978; scaffold626 GLEAN mRNA 61482 77673 0.819021 + . ID=CGI_10019978; scaffold626 GLEAN promoter 64233 65232 0.361303 - . ID=CGI_10019977; scaffold626 TRF Tandem_Repeat 67155 67437 548 + . . scaffold626 TRF Tandem_Repeat 74894 75061 191 + . . scaffold626 TRF Tandem_Repeat 75254 75298 90 + . . scaffold626 TRF Tandem_Repeat 77911 78094 98 + . . scaffold626 WUBlastX DNA_Sola 88670 89077 62 + . . scaffold626 GLEAN promoter 97286 98285 1 + . ID=CGI_10019979; scaffold626 GLEAN mRNA 98286 101968 1 + . ID=CGI_10019979; scaffold626 WUBlastX LTR_Ngaro 103642 103836 52 - . . scaffold626 WUBlastX LTR_Ngaro 103788 104528 249 - . . scaffold626 WUBlastX LTR_Ngaro 104549 104740 90 - . . scaffold626 WUBlastX LTR_Ngaro 104608 105297 135 - . . scaffold626 WUBlastX LTR_Ngaro 104746 105297 328 - . . scaffold626 WUBlastX LTR_Ngaro 105518 106243 39 + . . scaffold626 WUBlastX LTR_Ngaro 105743 106264 119 + . . scaffold626 WUBlastX LTR_Ngaro 105827 106264 154 + . . scaffold626 GLEAN mRNA 110679 110858 0.990488 - . ID=CGI_10019980; scaffold626 GLEAN promoter 110859 111858 0.990488 - . ID=CGI_10019980; scaffold626 GLEAN mRNA 111038 155634 0.745946 - . ID=CGI_10019981; scaffold626 TRF Tandem_Repeat 139703 139728 52 + . . scaffold626 WUBlastX DNA_Harbinger 140640 140762 60 - . . scaffold626 WUBlastX DNA_Harbinger 141022 141138 40 - . . scaffold626 WUBlastX DNA_Harbinger 141405 141551 57 - . . scaffold626 WUBlastX DNA_Harbinger 141432 141572 92 - . . scaffold626 WUBlastX DNA_Harbinger 142594 142935 109 - . . scaffold626 TRF Tandem_Repeat 143320 143373 99 + . . scaffold626 TRF Tandem_Repeat 151706 151771 88 + . . scaffold626 TRF Tandem_Repeat 151708 151760 72 + . . scaffold626 TRF Tandem_Repeat 151710 151771 90 + . . scaffold626 GLEAN promoter 155635 156634 0.745946 - . ID=CGI_10019981; scaffold626 GLEAN mRNA 156550 166973 0.679274 - . ID=CGI_10019982; scaffold626 GLEAN promoter 166974 167973 0.679274 - . ID=CGI_10019982; scaffold626 GLEAN mRNA 167916 169550 1 - . ID=CGI_10019983; scaffold626 GLEAN promoter 169551 170550 1 - . ID=CGI_10019983; scaffold626 GLEAN mRNA 170392 175049 0.765794 - . ID=CGI_10019984; scaffold626 TRF Tandem_Repeat 172034 172082 53 + . . scaffold626 TRF Tandem_Repeat 173535 173569 61 + . . scaffold626 GLEAN promoter 175050 176049 0.765794 - . ID=CGI_10019984; scaffold626 TRF Tandem_Repeat 176780 176887 198 + . . scaffold626 GLEAN promoter 177027 178026 1 + . ID=CGI_10019985; scaffold626 GLEAN mRNA 178027 182232 1 + . ID=CGI_10019985; scaffold626 TRF Tandem_Repeat 180948 180974 54 + . . scaffold626 GLEAN promoter 184398 185397 0.996819 + . ID=CGI_10019986; scaffold626 GLEAN mRNA 185398 190939 0.996819 + . ID=CGI_10019986; scaffold626 WUBlastX DNA_hAT 187436 188167 167 + . . scaffold626 WUBlastX DNA_hAT 189267 189407 55 + . . scaffold626 WUBlastX DNA_hAT 189297 189407 65 + . . scaffold626 WUBlastX DNA_hAT 189711 189911 59 + . . scaffold626 TRF Tandem_Repeat 190065 190106 54 + . . scaffold626 WUBlastX DNA_hAT 190176 190427 37 + . . scaffold626 GLEAN promoter 192084 193083 0.999984 + . ID=CGI_10019987; scaffold626 GLEAN mRNA 193084 194205 0.999984 + . ID=CGI_10019987; scaffold626 TRF Tandem_Repeat 196615 196662 53 + . . scaffold626 GLEAN mRNA 196710 199641 0.999999 - . ID=CGI_10019988; scaffold626 TRF Tandem_Repeat 197255 197304 100 + . . scaffold626 GLEAN promoter 199642 200641 0.999999 - . ID=CGI_10019988; scaffold626 GLEAN promoter 202118 203117 0.996819 + . ID=CGI_10019989; scaffold626 GLEAN mRNA 203118 213159 0.996819 + . ID=CGI_10019989; scaffold626 TRF Tandem_Repeat 204595 204644 91 + . . scaffold626 TRF Tandem_Repeat 205337 205384 96 + . . scaffold626 GLEAN promoter 213069 214068 1 + . ID=CGI_10019990; scaffold626 TRF Tandem_Repeat 213279 213349 135 + . . scaffold626 GLEAN mRNA 214069 217939 1 + . ID=CGI_10019990; scaffold626 GLEAN mRNA 218411 221527 0.999676 - . ID=CGI_10019991; scaffold626 TRF Tandem_Repeat 220068 220121 108 + . . scaffold626 GLEAN promoter 221393 222392 0.651134 + . ID=CGI_10019992; scaffold626 GLEAN promoter 221528 222527 0.999676 - . ID=CGI_10019991; scaffold626 GLEAN mRNA 222393 226318 0.651134 + . ID=CGI_10019992; scaffold626 TRF Tandem_Repeat 234926 234956 62 + . . scaffold626 TRF Tandem_Repeat 236304 236342 78 + . . scaffold626 GLEAN promoter 246234 247233 0.999778 + . ID=CGI_10019993; scaffold626 GLEAN mRNA 247234 250562 0.999778 + . ID=CGI_10019993; scaffold626 TRF Tandem_Repeat 255742 255773 64 + . . scaffold626 TRF Tandem_Repeat 259544 259577 68 + . . scaffold626 WUBlastX RC_Helitron 278542 279300 147 - . . scaffold626 TRF Tandem_Repeat 280083 280119 56 + . . scaffold626 TRF Tandem_Repeat 281698 281779 105 + . . scaffold626 TRF Tandem_Repeat 284321 284348 56 + . . scaffold626 WUBlastX LINE_CR1 286294 286539 57 + . . scaffold626 WUBlastX LINE_CR1 286339 286536 93 + . . scaffold626 WUBlastX LINE_L2 286378 286569 83 + . . scaffold626 WUBlastX LINE_CR1 286381 286539 111 + . . scaffold626 WUBlastX LINE_CR1 286859 286990 23 + . . scaffold626 WUBlastX LINE_L2 286898 287362 192 + . . scaffold626 WUBlastX LINE_L2 287368 287571 87 + . . scaffold626 WUBlastX LTR_Gypsy 290372 290782 34 - . . scaffold626 WUBlastX LTR_Gypsy 290492 290782 35 - . . scaffold626 WUBlastX LTR_Gypsy 290549 290782 73 - . . scaffold626 WUBlastX LTR_Gypsy 290830 291147 151 - . . scaffold626 WUBlastX LTR_Gypsy 291087 291365 79 - . . scaffold626 WUBlastX LTR_Gypsy 291485 291853 105 - . . scaffold626 WUBlastX LTR_Gypsy 291563 291853 111 - . . scaffold626 WUBlastX LTR_Gypsy 291593 291961 102 - . . scaffold626 WUBlastX LTR_Gypsy 291617 291853 132 - . . scaffold626 WUBlastX LTR_Gypsy 291698 292027 27 - . . scaffold626 WUBlastX LTR_Gypsy 292019 292393 56 - . . scaffold626 WUBlastX LTR_Gypsy 292091 292369 141 - . . scaffold626 WUBlastX LTR_Gypsy 292329 292484 85 - . . scaffold626 WUBlastX LTR_Gypsy 292329 292538 84 - . . scaffold626 WUBlastX LTR_Gypsy 292470 292574 29 - . . scaffold626 WUBlastX LTR_Gypsy 292762 292815 21 - . . scaffold626 WUBlastX LTR_Gypsy 292956 293267 55 - . . scaffold626 WUBlastX LTR_Gypsy 293014 293385 140 - . . scaffold626 WUBlastX DNA_Sola 296152 296826 94 - . . scaffold626 WUBlastX DNA_Sola 296221 296694 203 - . . scaffold626 WUBlastX DNA_Sola 296837 297112 70 - . . scaffold626 WUBlastX DNA_Sola 297126 297584 76 - . . scaffold626 WUBlastX DNA_Sola 298567 299319 150 - . . scaffold626 WUBlastX DNA_Sola 305267 305557 53 - . . scaffold626 WUBlastX DNA_Sola 306844 307083 49 - . . scaffold626 TRF Tandem_Repeat 314515 314637 162 + . . scaffold626 WUBlastX DNA_IS4EU 314664 315428 101 - . . scaffold626 WUBlastX DNA_Kolobok 319585 319653 33 + . . scaffold626 WUBlastX DNA_Kolobok 319659 319799 38 + . . scaffold626 WUBlastX DNA_Kolobok 319988 320518 62 + . . scaffold626 WUBlastX LINE_L1-Tx1 321589 321903 25 - . . scaffold626 WUBlastX LINE_L1-Tx1 322704 322739 22 - . . scaffold626 WUBlastX LINE_L1-Tx1 323000 323872 176 - . . scaffold626 WUBlastX LINE_L1 323447 324070 205 - . . scaffold626 WUBlastX LINE_L1-Tx1 323468 323872 240 - . . scaffold626 WUBlastX LINE_L1 323921 324151 34 - . . scaffold626 WUBlastX LINE_L2 330162 330800 27 - . . scaffold626 WUBlastX LINE_CR1-L2 330186 330593 54 - . . scaffold626 TRF Tandem_Repeat 331490 332449 1422 + . . scaffold626 WUBlastX LINE_CR1-L2 332705 333061 73 - . . scaffold626 WUBlastX LINE_CR1-L2 332762 333193 41 - . . scaffold626 TRF Tandem_Repeat 336107 336219 77 + . . scaffold626 TRF Tandem_Repeat 338092 338131 62 + . . scaffold626 TRF Tandem_Repeat 338162 339289 1607 + . . scaffold626 TRF Tandem_Repeat 345840 345903 114 + . . scaffold626 TRF Tandem_Repeat 346102 346144 59 + . . scaffold626 TRF Tandem_Repeat 347941 347980 53 + . . scaffold626 TRF Tandem_Repeat 349645 349687 86 + . . scaffold626 WUBlastX LINE_L1 354277 354744 27 - . . scaffold626 WUBlastX LINE_L1-Tx1 354349 354735 81 - . . scaffold626 TRF Tandem_Repeat 358739 359447 991 + . . scaffold626 TRF Tandem_Repeat 379973 380071 92 + . . scaffold626 TRF Tandem_Repeat 380142 380185 79 + . . scaffold626 WUBlastX DNA_Maverick 380778 382016 486 + . . scaffold626 WUBlastX DNA_Maverick 382031 382459 102 + . . scaffold626 WUBlastX LTR_Gypsy 382562 382924 64 - . . scaffold626 WUBlastX LTR_Gypsy 382625 382855 76 - . . scaffold626 WUBlastX LTR_Gypsy 382685 382951 110 - . . scaffold626 WUBlastX LTR_Gypsy 382777 383115 139 - . . scaffold626 WUBlastX LTR_Gypsy 382903 383124 146 - . . scaffold626 WUBlastX LTR_Gypsy 383002 383151 34 - . . scaffold626 WUBlastX LTR_Gypsy 383148 383279 117 - . . scaffold626 WUBlastX LTR_Gypsy 383177 383965 210 - . . scaffold626 WUBlastX LTR_Gypsy 383315 383998 432 - . . scaffold626 WUBlastX LTR_Gypsy 383462 384103 503 - . . scaffold626 WUBlastX LTR_Gypsy 383968 384651 569 - . . scaffold626 WUBlastX LTR_Gypsy 383992 384783 137 - . . scaffold626 WUBlastX DNA_Harbinger 385851 386024 42 + . . scaffold626 WUBlastX DNA_Harbinger 390339 390599 111 - . . scaffold626 WUBlastX DNA_Harbinger 390880 390993 63 - . . scaffold626 WUBlastX DNA_Harbinger 391131 391286 60 - . . scaffold626 WUBlastX DNA_Harbinger 391385 391474 37 - . . scaffold626 WUBlastX DNA_Harbinger 391406 391474 41 - . . scaffold626 WUBlastX DNA_Harbinger 392060 392620 106 - . . scaffold626 WUBlastX DNA_Harbinger 392198 392566 140 - . . scaffold626 WUBlastX DNA_Maverick 392683 392895 55 - . . scaffold626 WUBlastX DNA_Maverick 392722 392928 79 - . . scaffold626 WUBlastX DNA_Maverick 393214 393585 80 - . . scaffold626 WUBlastX DNA_Maverick 393460 393810 129 - . . scaffold626 WUBlastX DNA_Maverick 393819 394130 168 - . . scaffold626 WUBlastX DNA_Maverick 393819 394196 121 - . . scaffold626 WUBlastX DNA_Maverick 394129 394266 39 - . . scaffold626 GLEAN mRNA 394996 416260 0.622161 - . ID=CGI_10019994; scaffold626 TRF Tandem_Repeat 395348 395402 110 + . . scaffold626 TRF Tandem_Repeat 395402 395433 55 + . . scaffold626 TRF Tandem_Repeat 407137 408433 1414 + . . scaffold626 TRF Tandem_Repeat 407499 408294 514 + . . scaffold626 TRF Tandem_Repeat 407648 408433 870 + . . scaffold626 GLEAN promoter 416261 417260 0.622161 - . ID=CGI_10019994; scaffold626 GLEAN promoter 426695 427694 0.999984 + . ID=CGI_10019995; scaffold626 GLEAN mRNA 427695 428012 0.999984 + . ID=CGI_10019995; scaffold626 TRF Tandem_Repeat 429499 429536 60 + . . scaffold626 TRF Tandem_Repeat 432357 432386 51 + . . scaffold626 GLEAN mRNA 432556 438734 0.673125 - . ID=CGI_10019996; scaffold626 TRF Tandem_Repeat 433091 433305 277 + . . scaffold626 GLEAN promoter 438735 439734 0.673125 - . ID=CGI_10019996; scaffold626 GLEAN mRNA 441463 444215 1 - . ID=CGI_10019997; scaffold626 TRF Tandem_Repeat 442812 442837 52 + . . scaffold626 GLEAN promoter 444216 445215 1 - . ID=CGI_10019997; scaffold626 TRF Tandem_Repeat 447743 447830 86 + . . scaffold626 TRF Tandem_Repeat 448998 450322 2010 + . . scaffold626 WUBlastX LINE_CR1 452014 452877 239 + . . scaffold626 WUBlastX LINE_CR1 452173 452871 452 + . . scaffold626 WUBlastX LINE_CR1 452347 452871 503 + . . scaffold626 WUBlastX LINE_CR1 452885 453589 515 + . . scaffold626 GLEAN mRNA 468472 469122 0.999661 - . ID=CGI_10019998; scaffold626 GLEAN promoter 469123 470122 0.999661 - . ID=CGI_10019998; scaffold626 GLEAN mRNA 471959 474181 1 - . ID=CGI_10019999; scaffold626 GLEAN promoter 474182 475181 1 - . ID=CGI_10019999; scaffold626 GLEAN mRNA 474315 488242 0.98805 - . ID=CGI_10020000; scaffold626 WUBlastX LINE_Penelope 482857 483258 42 - . . scaffold626 WUBlastX LINE_Penelope 482965 483192 73 - . . scaffold626 TRF Tandem_Repeat 485311 485405 156 + . . scaffold626 GLEAN promoter 488243 489242 0.98805 - . ID=CGI_10020000; scaffold626 GLEAN mRNA 493298 498538 0.510005 - . ID=CGI_10020001; scaffold626 GLEAN promoter 498539 499538 0.510005 - . ID=CGI_10020001; scaffold626 WUBlastX LINE_L1-Tx1 500210 500275 32 + . . scaffold626 WUBlastX LINE_L1-Tx1 500257 501195 472 + . . scaffold626 WUBlastX LINE_L1-Tx1 501134 503440 1287 + . . scaffold626 WUBlastX LINE_L1-Tx1 503422 503841 57 + . . scaffold626 GLEAN promoter 504684 505683 0.539822 + . ID=CGI_10020002; scaffold626 GLEAN mRNA 505684 512874 0.539822 + . ID=CGI_10020002; scaffold626 TRF Tandem_Repeat 508113 508167 110 + . . scaffold626 WUBlastX DNA_Harbinger 537346 537735 242 + . . scaffold626 TRF Tandem_Repeat 541781 541835 110 + . . scaffold626 WUBlastX LINE_L1-Tx1 541994 542332 28 - . . scaffold626 WUBlastX LINE_L1-Tx1 542099 542320 29 - . . scaffold626 WUBlastX LINE_L1-Tx1 542340 542576 42 - . . scaffold626 WUBlastX LINE_L1-Tx1 542367 542642 40 - . . scaffold626 WUBlastX LINE_L1-Tx1 542370 542543 46 - . . scaffold626 WUBlastX LINE_L1-Tx1 543361 544395 36 - . . scaffold626 WUBlastX LINE_L1-Tx1 543697 543852 46 - . . scaffold626 WUBlastX LINE_L1-Tx1 543909 544178 54 - . . scaffold626 WUBlastX LINE_L1 544174 544389 78 - . . scaffold626 WUBlastX LINE_L1-Tx1 544207 544395 128 - . . scaffold626 WUBlastX LINE_L1-Tx1 544337 545050 177 - . . scaffold626 WUBlastX LINE_L1-Tx1 544346 545797 142 - . . scaffold626 WUBlastX LINE_L1-Tx1 544385 544981 428 - . . scaffold626 WUBlastX LINE_L1-Tx1 545468 545800 150 - . . scaffold626 WUBlastX LINE_L1 545549 545851 81 - . . scaffold626 TRF Tandem_Repeat 546884 546909 52 + . . scaffold626 TRF Tandem_Repeat 546909 546957 98 + . . scaffold626 WUBlastX LTR_Gypsy 549663 550373 126 + . . scaffold626 TRF Tandem_Repeat 551084 551134 50 + . . scaffold626 TRF Tandem_Repeat 551118 551247 149 + . . scaffold626 TRF Tandem_Repeat 551512 551643 178 + . . scaffold626 TRF Tandem_Repeat 551854 551900 58 + . . scaffold626 WUBlastX LINE_L1-Tx1 552785 553225 115 + . . scaffold626 GLEAN mRNA 555262 555666 0.989942 - . ID=CGI_10020004; scaffold626 GLEAN promoter 555667 556666 0.989942 - . ID=CGI_10020004; scaffold626 TRF Tandem_Repeat 556073 556217 184 + . . scaffold626 TRF Tandem_Repeat 556233 556258 52 + . . scaffold626 TRF Tandem_Repeat 559364 559412 75 + . . scaffold626 TRF Tandem_Repeat 559849 560049 179 + . . scaffold626 WUBlastX LINE_Penelope 561518 563374 228 + . . scaffold626 WUBlastX LINE_Penelope 562013 563170 356 + . . scaffold626 WUBlastX LINE_Penelope 562253 563374 333 + . . scaffold626 GLEAN promoter 565143 566142 0.433984 + . ID=CGI_10020005; scaffold626 GLEAN mRNA 566143 570342 0.433984 + . ID=CGI_10020005; scaffold626 WUBlastX LINE_L2 569125 569214 43 - . . scaffold626 WUBlastX DNA_Maverick 570955 571140 70 - . . scaffold626 WUBlastX DNA_Maverick 571150 571710 99 - . . scaffold626 WUBlastX DNA_Maverick 571390 571692 158 - . . scaffold626 WUBlastX LTR_Gypsy 574228 574392 69 + . . scaffold626 WUBlastX DNA_Kolobok 579689 579940 29 + . . scaffold626 WUBlastX DNA_Kolobok 580119 580352 81 - . . scaffold626 WUBlastX LTR_Pao 580989 582050 165 - . . scaffold626 WUBlastX LTR_Pao 581031 581468 253 - . . scaffold626 WUBlastX DNA_Kolobok 582748 582909 20 - . . scaffold626 WUBlastX DNA_Kolobok 582978 583193 54 - . . scaffold626 WUBlastX DNA_Kolobok 584409 584591 35 - . . scaffold626 WUBlastX DNA_Harbinger 588237 588497 46 - . . scaffold626 WUBlastX DNA_Harbinger 588276 588485 99 - . . scaffold626 TRF Tandem_Repeat 590677 590723 64 + . . scaffold626 GLEAN mRNA 594549 595413 1 - . ID=CGI_10020006; scaffold626 GLEAN promoter 595414 596413 1 - . ID=CGI_10020006; scaffold626 WUBlastX LINE_RTE-X 609172 609345 43 - . . scaffold626 WUBlastX LINE_RTE-X 609649 609861 31 - . . scaffold626 WUBlastX LINE_RTE-X 609688 609858 61 - . . scaffold626 WUBlastX LINE_RTE-X 609834 609953 59 - . . scaffold626 TRF Tandem_Repeat 617886 618043 152 + . . scaffold626 WUBlastX DNA_Maverick 620181 620519 195 + . . scaffold626 WUBlastX DNA_Maverick 620256 620513 222 + . . scaffold626 WUBlastX DNA_Maverick 620518 620712 139 + . . scaffold63 GLEAN mRNA 1 2273 1 + . ID=CGI_10017262; scaffold63 GLEAN promoter 1964 2963 0.5 + . ID=CGI_10017263; scaffold63 GLEAN mRNA 2964 7693 0.5 + . ID=CGI_10017263; scaffold63 GLEAN mRNA 19644 26713 0.777732 - . ID=CGI_10017264; scaffold63 GLEAN promoter 26714 27713 0.777732 - . ID=CGI_10017264; scaffold63 TRF Tandem_Repeat 27499 27537 78 + . . scaffold63 TRF Tandem_Repeat 41327 41373 94 + . . scaffold63 TRF Tandem_Repeat 42098 42132 70 + . . scaffold63 GLEAN promoter 57701 58700 1 + . ID=CGI_10017265; scaffold63 GLEAN mRNA 58701 66012 1 + . ID=CGI_10017265; scaffold63 GLEAN mRNA 69648 71360 0.998023 - . ID=CGI_10017266; scaffold63 GLEAN promoter 69915 70914 0.651135 + . ID=CGI_10017267; scaffold63 GLEAN mRNA 70915 77674 0.651135 + . ID=CGI_10017267; scaffold63 GLEAN promoter 71361 72360 0.998023 - . ID=CGI_10017266; scaffold63 TRF Tandem_Repeat 71689 71733 90 + . . scaffold63 GLEAN promoter 77266 78265 0.734553 + . ID=CGI_10017268; scaffold63 GLEAN mRNA 78266 83195 0.734553 + . ID=CGI_10017268; scaffold63 TRF Tandem_Repeat 84092 84129 76 + . . scaffold63 GLEAN mRNA 84543 84812 0.5 - . ID=CGI_10017269; scaffold63 GLEAN promoter 84813 85812 0.5 - . ID=CGI_10017269; scaffold63 GLEAN mRNA 86545 96512 0.999961 - . ID=CGI_10017270; scaffold63 TRF Tandem_Repeat 91919 91976 109 + . . scaffold63 GLEAN promoter 96513 97512 0.999961 - . ID=CGI_10017270; scaffold63 GLEAN promoter 96637 97636 1 + . ID=CGI_10017271; scaffold63 GLEAN mRNA 97637 98005 1 + . ID=CGI_10017271; scaffold63 WUBlastX LINE_L1-Tx1 127208 128875 680 - . . scaffold63 WUBlastX LINE_L1-Tx1 130271 132058 209 + . . scaffold63 WUBlastX LINE_L1 130973 132055 644 + . . scaffold63 WUBlastX LINE_L1-Tx1 132064 133254 442 + . . scaffold63 WUBlastX LINE_L1-Tx1 133304 133846 44 + . . scaffold63 WUBlastX LINE_L1-Tx1 133337 133786 79 + . . scaffold63 WUBlastX LINE_RTE-BovB 134252 134545 35 - . . scaffold63 WUBlastX LINE_RTE-BovB 134282 134497 54 - . . scaffold63 WUBlastX LINE_RTE-BovB 134529 135017 161 - . . scaffold63 WUBlastX LINE_RTE-BovB 134890 135102 83 - . . scaffold63 WUBlastX LINE_RTE-BovB 134890 135228 32 - . . scaffold63 WUBlastX LINE_RTE-BovB 134905 135138 78 - . . scaffold63 GLEAN promoter 140574 141573 0.999839 + . ID=CGI_10017272; scaffold63 GLEAN mRNA 141574 168555 0.999839 + . ID=CGI_10017272; scaffold63 TRF Tandem_Repeat 142058 142096 62 + . . scaffold63 WUBlastX DNA_TcMar-Tc1 143541 144581 202 + . . scaffold63 GLEAN mRNA 166230 171767 1 - . ID=CGI_10017273; scaffold63 TRF Tandem_Repeat 166754 166801 96 + . . scaffold63 TRF Tandem_Repeat 169833 169893 88 + . . scaffold63 TRF Tandem_Repeat 169835 169893 66 + . . scaffold63 GLEAN promoter 171768 172767 1 - . ID=CGI_10017273; scaffold63 GLEAN mRNA 198059 206786 0.8139 - . ID=CGI_10017274; scaffold63 TRF Tandem_Repeat 198335 198377 50 + . . scaffold63 TRF Tandem_Repeat 200982 201023 84 + . . scaffold63 TRF Tandem_Repeat 202222 202246 50 + . . scaffold63 TRF Tandem_Repeat 202841 202906 105 + . . scaffold63 TRF Tandem_Repeat 203666 203728 119 + . . scaffold63 GLEAN promoter 206787 207786 0.8139 - . ID=CGI_10017274; scaffold63 GLEAN promoter 225088 226087 0.843686 + . ID=CGI_10017275; scaffold63 GLEAN mRNA 226088 238680 0.843686 + . ID=CGI_10017275; scaffold63 WUBlastX LINE_L1 234564 234899 28 - . . scaffold63 TRF Tandem_Repeat 237412 237445 59 + . . scaffold63 TRF Tandem_Repeat 255703 255899 205 + . . scaffold63 TRF Tandem_Repeat 265782 265811 60 + . . scaffold63 WUBlastX LTR_Ngaro 269847 270263 62 - . . scaffold63 WUBlastX LTR_Ngaro 269859 270209 119 - . . scaffold63 WUBlastX LTR_Ngaro 270804 270998 64 - . . scaffold63 WUBlastX LTR_Ngaro 270855 271025 68 - . . scaffold63 TRF Tandem_Repeat 271234 271490 202 + . . scaffold63 TRF Tandem_Repeat 271244 271525 129 + . . scaffold63 TRF Tandem_Repeat 271247 271462 156 + . . scaffold63 TRF Tandem_Repeat 271578 271735 100 + . . scaffold63 TRF Tandem_Repeat 296434 296766 573 + . . scaffold63 TRF Tandem_Repeat 311918 311988 54 + . . scaffold63 TRF Tandem_Repeat 320500 320526 54 + . . scaffold63 GLEAN mRNA 322495 331291 0.994025 - . ID=CGI_10017276; scaffold63 GLEAN promoter 331292 332291 0.994025 - . ID=CGI_10017276; scaffold63 GLEAN mRNA 337065 345363 0.99921 - . ID=CGI_10017277; scaffold63 GLEAN promoter 345364 346363 0.99921 - . ID=CGI_10017277; scaffold63 GLEAN mRNA 353509 358740 1 - . ID=CGI_10017278; scaffold63 GLEAN promoter 358118 359117 0.79116 + . ID=CGI_10017279; scaffold63 GLEAN promoter 358741 359740 1 - . ID=CGI_10017278; scaffold63 GLEAN mRNA 359118 373143 0.79116 + . ID=CGI_10017279; scaffold63 TRF Tandem_Repeat 361983 362020 58 + . . scaffold63 TRF Tandem_Repeat 362022 362048 54 + . . scaffold63 TRF Tandem_Repeat 366429 366497 122 + . . scaffold63 TRF Tandem_Repeat 390085 390119 70 + . . scaffold63 GLEAN promoter 398305 399304 0.504917 + . ID=CGI_10017280; scaffold63 GLEAN mRNA 399305 401202 0.504917 + . ID=CGI_10017280; scaffold63 GLEAN mRNA 406163 425324 1 - . ID=CGI_10017281; scaffold63 TRF Tandem_Repeat 406823 406994 238 + . . scaffold63 TRF Tandem_Repeat 412580 412624 51 + . . scaffold63 TRF Tandem_Repeat 413725 413774 100 + . . scaffold63 WUBlastX DNA_En-Spm 415228 415536 43 + . . scaffold63 WUBlastX DNA_En-Spm 415282 415608 79 + . . scaffold63 WUBlastX DNA_En-Spm 415930 416049 49 + . . scaffold63 WUBlastX DNA_En-Spm 417157 418191 301 + . . scaffold63 WUBlastX DNA_En-Spm 417322 418569 169 + . . scaffold63 GLEAN promoter 417402 418401 0.634433 + . ID=CGI_10017282; scaffold63 WUBlastX DNA_En-Spm 417499 418320 195 + . . scaffold63 GLEAN mRNA 418402 418698 0.634433 + . ID=CGI_10017282; scaffold63 TRF Tandem_Repeat 419456 419698 279 + . . scaffold63 TRF Tandem_Repeat 419878 419909 57 + . . scaffold63 TRF Tandem_Repeat 420104 420178 143 + . . scaffold63 GLEAN promoter 425325 426324 1 - . ID=CGI_10017281; scaffold63 GLEAN promoter 427512 428511 0.99603 + . ID=CGI_10017283; scaffold63 GLEAN mRNA 428512 435771 0.99603 + . ID=CGI_10017283; scaffold63 TRF Tandem_Repeat 440449 440526 156 + . . scaffold63 TRF Tandem_Repeat 444078 444110 66 + . . scaffold63 WUBlastX DNA_hAT-Ac 447503 447877 123 - . . scaffold63 GLEAN promoter 448094 449093 1 + . ID=CGI_10017284; scaffold63 GLEAN mRNA 449094 452628 1 + . ID=CGI_10017284; scaffold63 WUBlastX LINE_CR1-L2 450595 450819 72 - . . scaffold63 GLEAN mRNA 453091 455377 0.999661 - . ID=CGI_10017285; scaffold63 GLEAN promoter 455378 456377 0.999661 - . ID=CGI_10017285; scaffold63 WUBlastX LINE_L1-Tx1 455873 456343 85 + . . scaffold63 WUBlastX LINE_L1-Tx1 455936 456316 204 + . . scaffold63 WUBlastX LINE_L1-Tx1 456331 458145 340 + . . scaffold63 WUBlastX LINE_L1-Tx1 457589 459616 268 + . . scaffold63 GLEAN promoter 459922 460921 0.776461 + . ID=CGI_10017286; scaffold63 GLEAN mRNA 460922 461101 0.776461 + . ID=CGI_10017286; scaffold63 TRF Tandem_Repeat 463153 463245 89 + . . scaffold63 TRF Tandem_Repeat 463156 463245 130 + . . scaffold63 WUBlastX DNA_Harbinger 465220 465531 92 + . . scaffold63 WUBlastX LINE_L1-Tx1 465558 465938 89 + . . scaffold63 WUBlastX LINE_L1-Tx1 465588 466046 27 + . . scaffold63 GLEAN promoter 474184 475183 0.596161 + . ID=CGI_10017287; scaffold63 GLEAN mRNA 475184 486261 0.596161 + . ID=CGI_10017287; scaffold63 TRF Tandem_Repeat 490719 491050 373 + . . scaffold63 TRF Tandem_Repeat 490719 491050 316 + . . scaffold630 GLEAN promoter 2911 3910 0.175167 + . ID=CGI_10018322; scaffold630 GLEAN mRNA 3911 45278 0.175167 + . ID=CGI_10018322; scaffold630 TRF Tandem_Repeat 21218 21358 74 + . . scaffold630 TRF Tandem_Repeat 29460 30491 1447 + . . scaffold630 TRF Tandem_Repeat 32304 32351 96 + . . scaffold630 TRF Tandem_Repeat 38207 38252 58 + . . scaffold630 TRF Tandem_Repeat 38425 40271 2756 + . . scaffold630 GLEAN mRNA 47169 48974 1 - . ID=CGI_10018323; scaffold630 GLEAN promoter 48975 49974 1 - . ID=CGI_10018323; scaffold630 WUBlastX LINE_RTE-X 55198 55452 53 - . . scaffold630 WUBlastX LINE_RTE-X 55303 55494 78 - . . scaffold630 WUBlastX LINE_RTE-X 55306 55569 37 - . . scaffold630 WUBlastX LINE_RTE-X 55638 55955 29 - . . scaffold630 WUBlastX LINE_RTE-X 55686 55955 44 - . . scaffold630 WUBlastX LINE_RTE-X 55737 55955 48 - . . scaffold630 GLEAN mRNA 65471 67235 0.906263 - . ID=CGI_10018324; scaffold630 TRF Tandem_Repeat 66406 66437 64 + . . scaffold630 GLEAN promoter 67236 68235 0.906263 - . ID=CGI_10018324; scaffold630 GLEAN mRNA 80549 90707 0.970045 - . ID=CGI_10018325; scaffold630 TRF Tandem_Repeat 84705 84741 74 + . . scaffold630 WUBlastX LINE_RTE-X 85561 86178 77 + . . scaffold630 WUBlastX LINE_RTE-X 85669 86178 101 + . . scaffold630 WUBlastX LINE_RTE-X 85669 86301 63 + . . scaffold630 TRF Tandem_Repeat 86423 86587 197 + . . scaffold630 TRF Tandem_Repeat 86657 86797 131 + . . scaffold630 WUBlastX LINE_RTE-X 86995 87288 105 + . . scaffold630 GLEAN promoter 90708 91707 0.970045 - . ID=CGI_10018325; scaffold630 TRF Tandem_Repeat 97327 97995 727 + . . scaffold630 TRF Tandem_Repeat 97330 97986 568 + . . scaffold630 TRF Tandem_Repeat 97331 97986 524 + . . scaffold630 TRF Tandem_Repeat 99628 99674 94 + . . scaffold630 TRF Tandem_Repeat 104800 104987 114 + . . scaffold630 TRF Tandem_Repeat 104800 104987 189 + . . scaffold630 TRF Tandem_Repeat 104986 105124 170 + . . scaffold630 GLEAN mRNA 105768 115629 0.889571 - . ID=CGI_10018326; scaffold630 GLEAN promoter 115630 116629 0.889571 - . ID=CGI_10018326; scaffold630 GLEAN mRNA 118883 127454 0.999676 - . ID=CGI_10018327; scaffold630 GLEAN promoter 127455 128454 0.999676 - . ID=CGI_10018327; scaffold630 TRF Tandem_Repeat 127645 127695 102 + . . scaffold630 TRF Tandem_Repeat 129366 129829 420 + . . scaffold630 TRF Tandem_Repeat 129366 129520 190 + . . scaffold630 TRF Tandem_Repeat 129366 129849 425 + . . scaffold630 TRF Tandem_Repeat 129519 129849 302 + . . scaffold630 TRF Tandem_Repeat 130284 130455 114 + . . scaffold630 WUBlastX DNA_Harbinger 141539 141736 135 - . . scaffold630 TRF Tandem_Repeat 143230 143296 89 + . . scaffold630 GLEAN mRNA 155389 168660 0.544823 - . ID=CGI_10018328; scaffold630 TRF Tandem_Repeat 165732 165785 99 + . . scaffold630 GLEAN promoter 168661 169660 0.544823 - . ID=CGI_10018328; scaffold630 TRF Tandem_Repeat 169714 169843 167 + . . scaffold630 TRF Tandem_Repeat 173126 173157 64 + . . scaffold630 WUBlastX LINE_L1 175093 175860 40 + . . scaffold630 WUBlastX LINE_L2 175309 175824 60 + . . scaffold630 TRF Tandem_Repeat 182792 182829 67 + . . scaffold630 WUBlastX RC_Helitron 183181 183504 148 - . . scaffold630 TRF Tandem_Repeat 184178 184290 85 + . . scaffold630 TRF Tandem_Repeat 184227 184324 139 + . . scaffold630 TRF Tandem_Repeat 184234 184322 58 + . . scaffold630 TRF Tandem_Repeat 203222 203264 86 + . . scaffold630 TRF Tandem_Repeat 209140 209187 96 + . . scaffold630 TRF Tandem_Repeat 214002 214087 100 + . . scaffold630 TRF Tandem_Repeat 215904 215934 62 + . . scaffold630 TRF Tandem_Repeat 216773 216901 121 + . . scaffold630 TRF Tandem_Repeat 216776 216884 173 + . . scaffold630 WUBlastX LINE_L1 216952 219537 279 - . . scaffold630 WUBlastX LINE_L1-Tx1 217312 219465 608 - . . scaffold630 WUBlastX LINE_L1-Tx1 219476 220276 128 - . . scaffold630 WUBlastX LINE_L1 220260 220445 60 - . . scaffold630 WUBlastX LINE_L1-Tx1 220269 220403 65 - . . scaffold630 WUBlastX LINE_CR1 221047 221430 93 - . . scaffold630 WUBlastX LINE_CR1 221469 221708 79 - . . scaffold630 WUBlastX LINE_L1 221725 222246 25 + . . scaffold630 WUBlastX LINE_L1 221827 222141 52 + . . scaffold630 WUBlastX LINE_L1-Tx1 221875 222243 122 + . . scaffold630 WUBlastX LINE_L1-Tx1 222251 223009 281 + . . scaffold630 WUBlastX LINE_L1 222966 223343 67 + . . scaffold630 WUBlastX LINE_L1-Tx1 222966 223283 257 + . . scaffold630 WUBlastX LINE_L1 223198 223425 62 + . . scaffold630 WUBlastX LINE_L1-Tx1 223427 223642 52 + . . scaffold630 TRF Tandem_Repeat 223991 224784 1101 + . . scaffold630 TRF Tandem_Repeat 224953 224992 53 + . . scaffold630 WUBlastX LINE_L1-Tx1 225006 225335 151 + . . scaffold630 WUBlastX LINE_L1-Tx1 225072 225353 184 + . . scaffold630 WUBlastX LINE_L1-Tx1 225421 226407 200 + . . scaffold630 GLEAN mRNA 227950 240900 0.999747 - . ID=CGI_10018329; scaffold630 TRF Tandem_Repeat 231539 231565 54 + . . scaffold630 GLEAN promoter 232090 233089 0.61505 + . ID=CGI_10018330; scaffold630 GLEAN mRNA 233090 241701 0.61505 + . ID=CGI_10018330; scaffold630 WUBlastX LINE_L1-Tx1 235356 236330 188 - . . scaffold630 GLEAN promoter 240901 241900 0.999747 - . ID=CGI_10018329; scaffold630 TRF Tandem_Repeat 241041 241095 110 + . . scaffold630 GLEAN promoter 253290 254289 0.970951 + . ID=CGI_10018331; scaffold630 GLEAN mRNA 254290 268362 0.970951 + . ID=CGI_10018331; scaffold630 TRF Tandem_Repeat 260073 260135 117 + . . scaffold630 TRF Tandem_Repeat 260785 260828 61 + . . scaffold630 TRF Tandem_Repeat 260786 260835 55 + . . scaffold630 TRF Tandem_Repeat 260859 261983 1693 + . . scaffold630 TRF Tandem_Repeat 265223 265355 101 + . . scaffold630 WUBlastX LTR_Gypsy 269039 269191 59 - . . scaffold630 WUBlastX LTR_Gypsy 269081 269194 59 - . . scaffold630 WUBlastX LTR_Gypsy 269121 269567 194 - . . scaffold630 WUBlastX LTR_Gypsy 269142 269657 88 - . . scaffold630 WUBlastX LTR_Gypsy 269528 270085 38 - . . scaffold630 WUBlastX LTR_Gypsy-Cigr 269546 269749 52 - . . scaffold630 WUBlastX LTR_Gypsy 270154 270354 29 - . . scaffold630 WUBlastX LTR_Gypsy 270157 270309 41 - . . scaffold630 WUBlastX LTR_Gypsy-Cigr 270715 271068 69 - . . scaffold630 TRF Tandem_Repeat 282413 283269 1127 + . . scaffold630 TRF Tandem_Repeat 283280 283346 116 + . . scaffold630 TRF Tandem_Repeat 308584 308821 324 + . . scaffold630 TRF Tandem_Repeat 308589 308821 341 + . . scaffold630 TRF Tandem_Repeat 310992 311079 92 + . . scaffold630 TRF Tandem_Repeat 312114 312246 106 + . . scaffold630 TRF Tandem_Repeat 313279 313325 94 + . . scaffold630 TRF Tandem_Repeat 313823 313873 93 + . . scaffold630 WUBlastX DNA_Crypton 323450 323788 65 + . . scaffold630 WUBlastX DNA_Crypton 323794 323955 43 + . . scaffold630 WUBlastX DNA_Crypton 323961 324164 74 + . . scaffold630 TRF Tandem_Repeat 325074 325138 60 + . . scaffold630 TRF Tandem_Repeat 330422 331671 1591 + . . scaffold630 WUBlastX DNA_hAT-Ac 332446 333987 309 - . . scaffold630 WUBlastX DNA_hAT-Ac 333502 334074 203 - . . scaffold630 TRF Tandem_Repeat 334178 334205 56 + . . scaffold630 TRF Tandem_Repeat 334271 334335 98 + . . scaffold630 GLEAN mRNA 340806 353631 0.861539 - . ID=CGI_10018332; scaffold630 WUBlastX LTR_Copia 341047 341160 20 - . . scaffold630 WUBlastX LTR_Gypsy 341276 342256 51 - . . scaffold630 WUBlastX LTR_Gypsy 341558 342256 494 - . . scaffold630 WUBlastX LTR_Gypsy 342259 342489 251 - . . scaffold630 WUBlastX LTR_Gypsy 342483 342965 400 - . . scaffold630 WUBlastX LTR_Gypsy 342925 343101 166 - . . scaffold630 WUBlastX LTR_Gypsy 342931 343140 135 - . . scaffold630 WUBlastX LTR_Gypsy 343100 343228 108 - . . scaffold630 WUBlastX LINE_L1-Tx1 349669 350712 183 - . . scaffold630 WUBlastX LINE_L1-Tx1 350700 351287 296 - . . scaffold630 WUBlastX LINE_L1-Tx1 351256 351963 527 - . . scaffold630 WUBlastX LINE_I 352522 352698 26 - . . scaffold630 WUBlastX LINE_L2 352561 352818 38 - . . scaffold630 WUBlastX LINE_L1 352795 353433 89 - . . scaffold630 GLEAN promoter 353632 354631 0.861539 - . ID=CGI_10018332; scaffold630 TRF Tandem_Repeat 360507 360617 147 + . . scaffold630 TRF Tandem_Repeat 360507 360654 164 + . . scaffold630 TRF Tandem_Repeat 370252 370320 138 + . . scaffold630 GLEAN mRNA 373403 389900 0.98161 - . ID=CGI_10018333; scaffold630 WUBlastX LTR_Gypsy 373614 373658 20 - . . scaffold630 WUBlastX LTR_Gypsy 374128 375498 1108 - . . scaffold630 WUBlastX LTR_Gypsy 374131 375750 342 - . . scaffold630 WUBlastX LTR_Gypsy 375623 375883 190 - . . scaffold630 WUBlastX LTR_Gypsy 375671 375925 74 - . . scaffold630 WUBlastX LTR_Gypsy 377917 378702 280 - . . scaffold630 GLEAN promoter 389901 390900 0.98161 - . ID=CGI_10018333; scaffold630 GLEAN promoter 390099 391098 0.988214 + . ID=CGI_10018334; scaffold630 GLEAN mRNA 391099 413660 0.988214 + . ID=CGI_10018334; scaffold630 TRF Tandem_Repeat 393094 393133 80 + . . scaffold630 TRF Tandem_Repeat 395455 395516 124 + . . scaffold630 TRF Tandem_Repeat 398180 398247 136 + . . scaffold630 TRF Tandem_Repeat 400531 400566 54 + . . scaffold630 TRF Tandem_Repeat 401522 401596 150 + . . scaffold630 TRF Tandem_Repeat 402256 402286 62 + . . scaffold630 TRF Tandem_Repeat 407550 407585 72 + . . scaffold630 TRF Tandem_Repeat 407831 407892 124 + . . scaffold630 TRF Tandem_Repeat 410674 410724 102 + . . scaffold630 TRF Tandem_Repeat 418520 418576 114 + . . scaffold630 TRF Tandem_Repeat 419318 420487 1405 + . . scaffold630 TRF Tandem_Repeat 425501 425787 301 + . . scaffold630 TRF Tandem_Repeat 425812 426119 195 + . . scaffold630 TRF Tandem_Repeat 426409 426665 122 + . . scaffold630 TRF Tandem_Repeat 426559 427470 460 + . . scaffold630 TRF Tandem_Repeat 426704 429049 1602 + . . scaffold630 TRF Tandem_Repeat 426704 427470 791 + . . scaffold630 TRF Tandem_Repeat 427477 427966 480 + . . scaffold630 TRF Tandem_Repeat 428103 428413 227 + . . scaffold630 TRF Tandem_Repeat 428514 428692 223 + . . scaffold630 TRF Tandem_Repeat 428699 429049 269 + . . scaffold630 TRF Tandem_Repeat 429871 429925 101 + . . scaffold630 TRF Tandem_Repeat 430752 430934 186 + . . scaffold630 TRF Tandem_Repeat 430941 431085 184 + . . scaffold630 TRF Tandem_Repeat 430949 431106 167 + . . scaffold630 TRF Tandem_Repeat 431175 431952 462 + . . scaffold630 TRF Tandem_Repeat 431389 432284 631 + . . scaffold630 TRF Tandem_Repeat 432049 432284 278 + . . scaffold630 TRF Tandem_Repeat 432408 433474 899 + . . scaffold630 TRF Tandem_Repeat 432764 433476 1115 + . . scaffold630 GLEAN mRNA 433427 438960 0.990209 - . ID=CGI_10018335; scaffold630 TRF Tandem_Repeat 436889 437115 391 + . . scaffold630 GLEAN promoter 438961 439960 0.990209 - . ID=CGI_10018335; scaffold630 GLEAN promoter 440503 441502 0.593285 + . ID=CGI_10018336; scaffold630 TRF Tandem_Repeat 441367 441495 165 + . . scaffold630 GLEAN mRNA 441503 454428 0.593285 + . ID=CGI_10018336; scaffold630 TRF Tandem_Repeat 445766 446034 493 + . . scaffold630 GLEAN promoter 453721 454720 0.333198 + . ID=CGI_10018337; scaffold630 GLEAN mRNA 454721 477432 0.333198 + . ID=CGI_10018337; scaffold630 GLEAN mRNA 460696 463902 0.831103 - . ID=CGI_10018338; scaffold630 GLEAN promoter 463903 464902 0.831103 - . ID=CGI_10018338; scaffold630 GLEAN promoter 482675 483674 0.995359 + . ID=CGI_10018339; scaffold630 GLEAN mRNA 483675 488651 0.995359 + . ID=CGI_10018339; scaffold630 WUBlastX LTR_DIRS 489969 490103 23 + . . scaffold630 WUBlastX LTR_DIRS 489993 490106 35 + . . scaffold630 WUBlastX LTR_DIRS 490035 490112 35 + . . scaffold630 WUBlastX LTR_DIRS 490240 490344 34 + . . scaffold630 WUBlastX LTR_DIRS 490264 490437 61 + . . scaffold630 WUBlastX LTR_DIRS 490967 491449 26 + . . scaffold630 WUBlastX LTR_DIRS 491073 491228 32 + . . scaffold630 GLEAN promoter 491336 492335 0.289599 + . ID=CGI_10018340; scaffold630 WUBlastX LTR_DIRS 491458 491991 126 + . . scaffold630 GLEAN mRNA 492336 537451 0.289599 + . ID=CGI_10018340; scaffold630 TRF Tandem_Repeat 524481 524514 59 + . . scaffold630 GLEAN promoter 536657 537656 0.999365 + . ID=CGI_10018341; scaffold630 GLEAN mRNA 537657 540803 0.999365 + . ID=CGI_10018341; scaffold630 GLEAN promoter 540240 541239 1 + . ID=CGI_10018342; scaffold630 GLEAN mRNA 541240 543572 1 + . ID=CGI_10018342; scaffold631 GLEAN promoter 1 139 0.999376 + . ID=CGI_10014165; scaffold631 GLEAN mRNA 140 7642 0.999376 + . ID=CGI_10014165; scaffold631 TRF Tandem_Repeat 676 961 473 + . . scaffold631 TRF Tandem_Repeat 1408 1594 302 + . . scaffold631 TRF Tandem_Repeat 3488 3516 58 + . . scaffold631 TRF Tandem_Repeat 6293 6338 92 + . . scaffold631 TRF Tandem_Repeat 6388 6437 100 + . . scaffold631 TRF Tandem_Repeat 8707 8738 64 + . . scaffold631 TRF Tandem_Repeat 11982 12045 128 + . . scaffold631 GLEAN mRNA 14211 18684 1 - . ID=CGI_10014166; scaffold631 TRF Tandem_Repeat 16423 16465 86 + . . scaffold631 GLEAN promoter 18685 19684 1 - . ID=CGI_10014166; scaffold631 GLEAN promoter 32736 33735 0.98735 + . ID=CGI_10014167; scaffold631 GLEAN mRNA 33736 46573 0.98735 + . ID=CGI_10014167; scaffold631 TRF Tandem_Repeat 49336 49365 60 + . . scaffold631 TRF Tandem_Repeat 59606 59651 57 + . . scaffold631 TRF Tandem_Repeat 59609 59650 50 + . . scaffold631 GLEAN promoter 60139 61138 0.931607 + . ID=CGI_10014168; scaffold631 WUBlastX DNA_Harbinger 60781 61041 82 + . . scaffold631 GLEAN mRNA 61139 62206 0.931607 + . ID=CGI_10014168; scaffold631 TRF Tandem_Repeat 61280 61340 122 + . . scaffold631 WUBlastX DNA_Harbinger 62358 62867 125 - . . scaffold631 WUBlastX DNA_TcMar-Tc1 72451 72615 71 - . . scaffold631 WUBlastX DNA_TcMar-Tc1 72498 72788 86 - . . scaffold631 WUBlastX DNA_TcMar-Tc1 72543 72869 170 - . . scaffold631 WUBlastX DNA_TcMar-Tc1 72585 72923 152 - . . scaffold631 WUBlastX DNA_TcMar-Tc1 72594 73007 64 - . . scaffold631 WUBlastX DNA_TcMar-Tc1 72917 73099 38 - . . scaffold631 WUBlastX DNA_TcMar-Tc1 73117 73230 30 - . . scaffold631 TRF Tandem_Repeat 74835 74867 66 + . . scaffold631 WUBlastX LINE_RTE-X 74868 76265 689 - . . scaffold631 WUBlastX LINE_CR1 76405 76452 20 - . . scaffold631 GLEAN mRNA 83284 83535 0.999925 - . ID=CGI_10014169; scaffold631 GLEAN promoter 83536 84535 0.999925 - . ID=CGI_10014169; scaffold631 TRF Tandem_Repeat 84115 84170 112 + . . scaffold631 TRF Tandem_Repeat 86529 86647 154 + . . scaffold631 TRF Tandem_Repeat 86940 87069 260 + . . scaffold631 GLEAN mRNA 95661 117923 0.999624 - . ID=CGI_10014170; scaffold631 WUBlastX LINE_RTE-X 96701 97156 69 + . . scaffold631 WUBlastX LINE_RTE-X 96791 97177 100 + . . scaffold631 TRF Tandem_Repeat 97206 97265 57 + . . scaffold631 TRF Tandem_Repeat 109739 109779 64 + . . scaffold631 TRF Tandem_Repeat 114585 114626 84 + . . scaffold631 TRF Tandem_Repeat 116222 116413 287 + . . scaffold631 TRF Tandem_Repeat 116222 116420 220 + . . scaffold631 GLEAN promoter 117924 118923 0.999624 - . ID=CGI_10014170; scaffold631 GLEAN mRNA 118813 126086 1 - . ID=CGI_10014171; scaffold631 GLEAN promoter 126087 127086 1 - . ID=CGI_10014171; scaffold631 GLEAN mRNA 131392 145592 0.831917 - . ID=CGI_10014172; scaffold631 WUBlastX LINE_CR1-L2 132599 133069 43 - . . scaffold631 WUBlastX LINE_L2 132674 133078 90 - . . scaffold631 WUBlastX LINE_L2 132779 133087 111 - . . scaffold631 WUBlastX LINE_CR1 132779 133171 28 - . . scaffold631 WUBlastX LINE_L2 133273 133326 23 - . . scaffold631 TRF Tandem_Repeat 136097 136128 64 + . . scaffold631 TRF Tandem_Repeat 137304 137351 96 + . . scaffold631 GLEAN promoter 145593 146592 0.831917 - . ID=CGI_10014172; scaffold631 TRF Tandem_Repeat 146243 146295 106 + . . scaffold631 WUBlastX LINE_L1-Tx1 146393 147592 96 - . . scaffold631 WUBlastX LINE_L1-Tx1 146606 147595 139 - . . scaffold631 WUBlastX LINE_L1-Tx1 147541 148860 304 - . . scaffold631 WUBlastX LINE_L1-Tx1 147622 148569 547 - . . scaffold631 WUBlastX LINE_L1-Tx1 148797 149075 69 - . . scaffold631 WUBlastX LINE_L1-Tx1 149054 149947 230 - . . scaffold631 WUBlastX LINE_Jockey 149597 150022 48 - . . scaffold631 GLEAN mRNA 153854 170213 0.731167 - . ID=CGI_10014173; scaffold631 TRF Tandem_Repeat 164607 164703 185 + . . scaffold631 TRF Tandem_Repeat 166064 166280 168 + . . scaffold631 TRF Tandem_Repeat 166064 166280 197 + . . scaffold631 TRF Tandem_Repeat 168284 169291 1236 + . . scaffold631 GLEAN promoter 170214 171213 0.731167 - . ID=CGI_10014173; scaffold631 GLEAN mRNA 175605 179757 0.996199 - . ID=CGI_10014174; scaffold631 GLEAN promoter 179758 180757 0.996199 - . ID=CGI_10014174; scaffold631 TRF Tandem_Repeat 182623 182679 105 + . . scaffold631 TRF Tandem_Repeat 182695 182747 106 + . . scaffold631 WUBlastX LINE_Penelope 182825 183073 91 - . . scaffold631 WUBlastX LINE_Penelope 183159 183239 27 - . . scaffold631 WUBlastX LINE_Penelope 183499 183660 24 - . . scaffold631 GLEAN mRNA 191337 200226 0.999675 - . ID=CGI_10014175; scaffold631 TRF Tandem_Repeat 192811 192845 61 + . . scaffold631 TRF Tandem_Repeat 199021 199321 286 + . . scaffold631 GLEAN promoter 200227 201226 0.999675 - . ID=CGI_10014175; scaffold631 TRF Tandem_Repeat 200962 200995 68 + . . scaffold631 TRF Tandem_Repeat 201435 201575 129 + . . scaffold631 GLEAN mRNA 202270 210235 0.51066 - . ID=CGI_10014176; scaffold631 TRF Tandem_Repeat 202491 202603 84 + . . scaffold631 TRF Tandem_Repeat 204968 205072 104 + . . scaffold631 TRF Tandem_Repeat 205468 205561 127 + . . scaffold631 TRF Tandem_Repeat 208426 208471 92 + . . scaffold631 GLEAN promoter 208673 209672 0.654708 + . ID=CGI_10014177; scaffold631 GLEAN mRNA 209673 213006 0.654708 + . ID=CGI_10014177; scaffold631 GLEAN promoter 210236 211235 0.51066 - . ID=CGI_10014176; scaffold631 TRF Tandem_Repeat 211337 211588 409 + . . scaffold631 TRF Tandem_Repeat 216702 216773 126 + . . scaffold631 TRF Tandem_Repeat 217473 217850 594 + . . scaffold631 GLEAN mRNA 219246 234334 0.970776 - . ID=CGI_10014178; scaffold631 TRF Tandem_Repeat 220342 221146 1312 + . . scaffold631 WUBlastX LINE_RTE-X 224578 224931 31 + . . scaffold631 WUBlastX LINE_RTE-X 224650 224889 87 + . . scaffold631 WUBlastX LINE_RTE-X 224656 224961 69 + . . scaffold631 WUBlastX LINE_RTE-X 224940 225005 42 + . . scaffold631 WUBlastX LINE_RTE-X 224978 225652 140 + . . scaffold631 GLEAN promoter 234335 235334 0.970776 - . ID=CGI_10014178; scaffold631 GLEAN promoter 236261 237260 0.998241 + . ID=CGI_10014179; scaffold631 GLEAN mRNA 237261 247886 0.998241 + . ID=CGI_10014179; scaffold631 TRF Tandem_Repeat 246313 246363 102 + . . scaffold631 GLEAN mRNA 249746 258655 0.993811 - . ID=CGI_10014180; scaffold631 GLEAN promoter 258656 259655 0.993811 - . ID=CGI_10014180; scaffold631 GLEAN mRNA 270044 275615 0.962788 - . ID=CGI_10014181; scaffold631 GLEAN promoter 275616 276615 0.962788 - . ID=CGI_10014181; scaffold631 WUBlastX LINE_RTE-BovB 277691 278074 179 - . . scaffold631 GLEAN promoter 277702 278701 1 + . ID=CGI_10014182; scaffold631 WUBlastX LINE_RTE-BovB 277703 278152 139 - . . scaffold631 GLEAN mRNA 278702 280629 1 + . ID=CGI_10014182; scaffold631 WUBlastX LINE_L1 284360 284551 66 + . . scaffold631 WUBlastX LINE_L1-Tx1 284405 284587 83 + . . scaffold631 WUBlastX LINE_L1-Tx1 284438 284551 89 + . . scaffold631 WUBlastX LINE_L1-Tx1 284536 284847 93 + . . scaffold631 GLEAN promoter 288680 289679 0.648455 + . ID=CGI_10014183; scaffold631 GLEAN mRNA 289680 290814 0.648455 + . ID=CGI_10014183; scaffold631 GLEAN promoter 289829 290828 0.933552 + . ID=CGI_10014184; scaffold631 GLEAN mRNA 290829 291128 0.933552 + . ID=CGI_10014184; scaffold631 GLEAN mRNA 290961 303722 0.999992 - . ID=CGI_10014185; scaffold631 GLEAN promoter 303723 304722 0.999992 - . ID=CGI_10014185; scaffold631 GLEAN mRNA 306513 310692 1 - . ID=CGI_10014186; scaffold631 TRF Tandem_Repeat 308400 308519 222 + . . scaffold631 GLEAN promoter 310693 311692 1 - . ID=CGI_10014186; scaffold631 GLEAN mRNA 311038 316999 0.99846 - . ID=CGI_10014187; scaffold631 WUBlastX LINE_RTE-X 314147 314899 70 - . . scaffold631 WUBlastX LINE_RTE-X 314264 317551 813 - . . scaffold631 GLEAN promoter 317000 317999 0.99846 - . ID=CGI_10014187; scaffold631 WUBlastX LINE_I 317339 317638 62 - . . scaffold631 WUBlastX LINE_L1 317606 318490 278 - . . scaffold631 TRF Tandem_Repeat 318749 318941 230 + . . scaffold631 WUBlastX LINE_RTE-X 324744 325073 64 - . . scaffold631 WUBlastX LINE_RTE-X 324762 325298 40 - . . scaffold631 WUBlastX LINE_RTE-X 325423 325578 39 - . . scaffold631 WUBlastX LINE_RTE-X 325450 325578 71 - . . scaffold631 TRF Tandem_Repeat 325668 325807 164 + . . scaffold631 TRF Tandem_Repeat 325669 325781 147 + . . scaffold631 GLEAN promoter 326955 327954 0.744806 + . ID=CGI_10014188; scaffold631 GLEAN mRNA 327955 329310 0.744806 + . ID=CGI_10014188; scaffold631 GLEAN promoter 330744 331743 0.629788 + . ID=CGI_10014189; scaffold631 GLEAN mRNA 331744 332601 0.629788 + . ID=CGI_10014189; scaffold631 TRF Tandem_Repeat 334463 334508 76 + . . scaffold631 GLEAN promoter 339312 340311 0.999982 + . ID=CGI_10014190; scaffold631 GLEAN mRNA 340312 343494 0.999982 + . ID=CGI_10014190; scaffold631 TRF Tandem_Repeat 355478 355553 152 + . . scaffold631 GLEAN mRNA 358075 359253 0.999638 - . ID=CGI_10014191; scaffold631 GLEAN promoter 359254 360253 0.999638 - . ID=CGI_10014191; scaffold631 GLEAN promoter 361894 362893 0.0587318 + . ID=CGI_10014192; scaffold631 WUBlastX LINE_RTE-X 362205 362648 129 - . . scaffold631 GLEAN mRNA 362894 386930 0.0587318 + . ID=CGI_10014192; scaffold631 TRF Tandem_Repeat 363816 364101 344 + . . scaffold631 TRF Tandem_Repeat 364719 365338 395 + . . scaffold631 TRF Tandem_Repeat 364727 365391 364 + . . scaffold631 TRF Tandem_Repeat 364727 365391 303 + . . scaffold631 TRF Tandem_Repeat 366392 366445 81 + . . scaffold631 TRF Tandem_Repeat 367898 367933 72 + . . scaffold631 TRF Tandem_Repeat 368312 368361 75 + . . scaffold631 TRF Tandem_Repeat 378431 378497 71 + . . scaffold631 WUBlastX DNA_IS4EU 390070 390297 62 + . . scaffold632 GLEAN promoter 1306 2305 0.989235 + . ID=CGI_10018432; scaffold632 GLEAN mRNA 2306 19172 0.989235 + . ID=CGI_10018432; scaffold632 TRF Tandem_Repeat 5536 5573 76 + . . scaffold632 TRF Tandem_Repeat 9442 9507 132 + . . scaffold632 TRF Tandem_Repeat 13480 13523 88 + . . scaffold632 TRF Tandem_Repeat 14378 14423 92 + . . scaffold632 TRF Tandem_Repeat 14555 14596 77 + . . scaffold632 TRF Tandem_Repeat 18600 18938 505 + . . scaffold632 GLEAN promoter 21330 22329 0.999676 + . ID=CGI_10018433; scaffold632 GLEAN mRNA 22330 27896 0.999676 + . ID=CGI_10018433; scaffold632 GLEAN mRNA 31670 60956 0.999949 - . ID=CGI_10018434; scaffold632 GLEAN promoter 46523 47522 0.634588 + . ID=CGI_10018435; scaffold632 GLEAN mRNA 47523 52133 0.634588 + . ID=CGI_10018435; scaffold632 GLEAN promoter 60957 61956 0.999949 - . ID=CGI_10018434; scaffold632 GLEAN promoter 65785 66784 0.992939 + . ID=CGI_10018436; scaffold632 GLEAN mRNA 66785 91700 0.992939 + . ID=CGI_10018436; scaffold632 TRF Tandem_Repeat 74205 74252 96 + . . scaffold632 GLEAN mRNA 77927 80066 0.777738 - . ID=CGI_10018437; scaffold632 GLEAN promoter 80067 81066 0.777738 - . ID=CGI_10018437; scaffold632 WUBlastX LINE_CR1 93209 93619 39 + . . scaffold632 GLEAN promoter 93211 94210 0.991776 + . ID=CGI_10018438; scaffold632 WUBlastX LTR_Pao 94157 94276 32 + . . scaffold632 GLEAN mRNA 94211 107626 0.991776 + . ID=CGI_10018438; scaffold632 WUBlastX LTR_Pao 94232 95134 101 + . . scaffold632 WUBlastX LTR_Pao 94565 98128 2301 + . . scaffold632 TRF Tandem_Repeat 100636 100744 157 + . . scaffold632 TRF Tandem_Repeat 101296 101383 149 + . . scaffold632 TRF Tandem_Repeat 102139 102180 84 + . . scaffold632 GLEAN mRNA 102593 110874 0.69366 - . ID=CGI_10018439; scaffold632 TRF Tandem_Repeat 102810 102892 148 + . . scaffold632 TRF Tandem_Repeat 106074 106455 466 + . . scaffold632 GLEAN promoter 110875 111874 0.69366 - . ID=CGI_10018439; scaffold632 GLEAN mRNA 112969 120581 0.641689 - . ID=CGI_10018440; scaffold632 GLEAN promoter 120582 121581 0.641689 - . ID=CGI_10018440; scaffold632 GLEAN mRNA 122455 130054 0.978757 - . ID=CGI_10018441; scaffold632 GLEAN promoter 130055 131054 0.978757 - . ID=CGI_10018441; scaffold632 WUBlastX LINE_L1-Tx1 149752 150294 44 - . . scaffold632 WUBlastX LINE_L1-Tx1 149752 150207 174 - . . scaffold632 GLEAN mRNA 164609 172226 0.999676 - . ID=CGI_10018442; scaffold632 GLEAN promoter 172227 173226 0.999676 - . ID=CGI_10018442; scaffold632 GLEAN promoter 173493 174492 0.990764 + . ID=CGI_10018443; scaffold632 GLEAN mRNA 174493 180221 0.990764 + . ID=CGI_10018443; scaffold632 GLEAN promoter 181538 182537 0.99991 + . ID=CGI_10018444; scaffold632 GLEAN mRNA 182538 188786 0.99991 + . ID=CGI_10018444; scaffold632 TRF Tandem_Repeat 184194 184361 160 + . . scaffold632 GLEAN promoter 193900 194899 1 + . ID=CGI_10018445; scaffold632 GLEAN mRNA 194900 199134 1 + . ID=CGI_10018445; scaffold632 TRF Tandem_Repeat 195672 196031 456 + . . scaffold632 GLEAN promoter 198607 199606 0.999654 + . ID=CGI_10018446; scaffold632 GLEAN mRNA 199607 210824 0.999654 + . ID=CGI_10018446; scaffold632 TRF Tandem_Repeat 204886 204973 149 + . . scaffold632 TRF Tandem_Repeat 205706 205884 322 + . . scaffold632 TRF Tandem_Repeat 206369 206412 88 + . . scaffold632 TRF Tandem_Repeat 208023 208366 517 + . . scaffold632 GLEAN promoter 209936 210935 0.99993 + . ID=CGI_10018447; scaffold632 GLEAN mRNA 210936 230270 0.99993 + . ID=CGI_10018447; scaffold632 TRF Tandem_Repeat 212750 212916 129 + . . scaffold632 TRF Tandem_Repeat 213036 213391 276 + . . scaffold632 TRF Tandem_Repeat 213420 213610 269 + . . scaffold632 TRF Tandem_Repeat 213647 214086 193 + . . scaffold632 TRF Tandem_Repeat 213714 214086 447 + . . scaffold632 TRF Tandem_Repeat 214541 214693 109 + . . scaffold632 TRF Tandem_Repeat 216318 216360 86 + . . scaffold632 TRF Tandem_Repeat 216395 216429 70 + . . scaffold632 TRF Tandem_Repeat 216791 216868 156 + . . scaffold632 TRF Tandem_Repeat 218383 218987 834 + . . scaffold632 TRF Tandem_Repeat 218383 218993 892 + . . scaffold632 TRF Tandem_Repeat 222043 222231 369 + . . scaffold632 TRF Tandem_Repeat 223527 223607 146 + . . scaffold632 TRF Tandem_Repeat 229433 229464 64 + . . scaffold632 TRF Tandem_Repeat 241242 241491 446 + . . scaffold632 GLEAN promoter 250262 251261 0.888794 + . ID=CGI_10018448; scaffold632 GLEAN mRNA 251262 255233 0.888794 + . ID=CGI_10018448; scaffold632 TRF Tandem_Repeat 253050 253141 150 + . . scaffold632 TRF Tandem_Repeat 256248 257078 956 + . . scaffold632 GLEAN mRNA 257757 259521 0.996199 - . ID=CGI_10018449; scaffold632 GLEAN promoter 259522 260521 0.996199 - . ID=CGI_10018449; scaffold632 TRF Tandem_Repeat 268588 268634 94 + . . scaffold632 WUBlastX LINE_L1 270550 271341 109 + . . scaffold632 WUBlastX LINE_L1 270724 271413 174 + . . scaffold632 WUBlastX LINE_L1 270769 271557 59 + . . scaffold632 GLEAN promoter 270859 271858 0.999129 + . ID=CGI_10018450; scaffold632 WUBlastX LINE_L1 270862 271392 234 + . . scaffold632 WUBlastX LINE_RTE-X 271588 271800 66 + . . scaffold632 WUBlastX LINE_RTE-X 271612 271782 68 + . . scaffold632 WUBlastX LINE_RTE-X 271793 274405 843 + . . scaffold632 GLEAN mRNA 271859 278767 0.999129 + . ID=CGI_10018450; scaffold632 WUBlastX LINE_RTE-X 272585 274468 957 + . . scaffold632 WUBlastX LINE_RTE-X 274425 275033 124 + . . scaffold632 WUBlastX LINE_RTE-X 274500 274961 140 + . . scaffold632 TRF Tandem_Repeat 279578 279618 82 + . . scaffold632 GLEAN promoter 280399 281398 1 + . ID=CGI_10018451; scaffold632 GLEAN mRNA 281399 285847 1 + . ID=CGI_10018451; scaffold632 TRF Tandem_Repeat 282037 282061 50 + . . scaffold632 GLEAN mRNA 287425 300965 0.999673 - . ID=CGI_10018452; scaffold632 GLEAN promoter 300966 301965 0.999673 - . ID=CGI_10018452; scaffold632 GLEAN mRNA 304476 306408 0.999999 - . ID=CGI_10018453; scaffold632 GLEAN promoter 306409 307408 0.999999 - . ID=CGI_10018453; scaffold632 TRF Tandem_Repeat 307482 307522 82 + . . scaffold632 TRF Tandem_Repeat 307635 307667 66 + . . scaffold632 TRF Tandem_Repeat 310031 310065 70 + . . scaffold632 TRF Tandem_Repeat 311727 311751 50 + . . scaffold632 TRF Tandem_Repeat 313459 313592 106 + . . scaffold632 TRF Tandem_Repeat 313677 313772 115 + . . scaffold632 TRF Tandem_Repeat 313973 314059 95 + . . scaffold632 GLEAN promoter 314113 315112 0.999981 + . ID=CGI_10018454; scaffold632 TRF Tandem_Repeat 314609 314655 94 + . . scaffold632 GLEAN mRNA 315113 327334 0.999981 + . ID=CGI_10018454; scaffold632 TRF Tandem_Repeat 320474 320754 367 + . . scaffold632 TRF Tandem_Repeat 320828 320953 139 + . . scaffold632 TRF Tandem_Repeat 320987 321175 207 + . . scaffold632 TRF Tandem_Repeat 324472 324926 479 + . . scaffold632 GLEAN mRNA 331183 335555 1 - . ID=CGI_10018455; scaffold632 GLEAN promoter 334978 335977 1 + . ID=CGI_10018456; scaffold632 GLEAN promoter 335556 336555 1 - . ID=CGI_10018455; scaffold632 GLEAN mRNA 335978 348696 1 + . ID=CGI_10018456; scaffold632 TRF Tandem_Repeat 348330 348496 140 + . . scaffold632 TRF Tandem_Repeat 371866 371896 53 + . . scaffold632 TRF Tandem_Repeat 374526 374615 119 + . . scaffold632 TRF Tandem_Repeat 379241 379292 86 + . . scaffold632 TRF Tandem_Repeat 379241 379298 73 + . . scaffold632 TRF Tandem_Repeat 381283 381326 88 + . . scaffold632 GLEAN mRNA 383615 411354 0.813894 - . ID=CGI_10018457; scaffold632 TRF Tandem_Repeat 384224 385055 1075 + . . scaffold632 TRF Tandem_Repeat 391390 391420 62 + . . scaffold632 TRF Tandem_Repeat 392291 392329 53 + . . scaffold632 TRF Tandem_Repeat 394295 394640 185 + . . scaffold632 TRF Tandem_Repeat 401673 402037 387 + . . scaffold632 TRF Tandem_Repeat 405709 405760 52 + . . scaffold632 GLEAN promoter 411355 412354 0.813894 - . ID=CGI_10018457; scaffold632 GLEAN mRNA 415638 422933 1 - . ID=CGI_10018458; scaffold632 GLEAN promoter 422934 423933 1 - . ID=CGI_10018458; scaffold632 TRF Tandem_Repeat 429603 429871 456 + . . scaffold632 WUBlastX LINE_RTE-X 434599 436566 732 - . . scaffold632 GLEAN promoter 438565 439564 0.99507 + . ID=CGI_10018459; scaffold632 GLEAN mRNA 439565 440200 0.99507 + . ID=CGI_10018459; scaffold632 WUBlastX LTR_Pao 439691 440188 35 + . . scaffold632 WUBlastX LTR_Pao 444397 445725 1304 + . . scaffold632 TRF Tandem_Repeat 451427 451479 106 + . . scaffold632 TRF Tandem_Repeat 454780 454831 88 + . . scaffold632 WUBlastX LINE_Penelope 459307 459585 37 - . . scaffold632 WUBlastX LINE_Penelope 459648 459854 71 - . . scaffold632 WUBlastX LINE_Penelope 459648 459920 53 - . . scaffold632 TRF Tandem_Repeat 460865 460947 109 + . . scaffold632 TRF Tandem_Repeat 460867 460948 101 + . . scaffold632 WUBlastX LINE_L2 480274 481080 373 - . . scaffold632 WUBlastX LINE_L2 480701 482776 633 - . . scaffold632 GLEAN mRNA 482321 516551 0.258351 - . ID=CGI_10018460; scaffold632 WUBlastX LINE_CR1 482773 483162 42 - . . scaffold632 WUBlastX LINE_CR1 482773 482964 63 - . . scaffold632 WUBlastX LINE_L2 482905 483102 50 - . . scaffold632 WUBlastX LINE_L1-Tx1 483310 483345 22 + . . scaffold632 WUBlastX LINE_L1 483360 483686 82 + . . scaffold632 WUBlastX LINE_L1-Tx1 483426 483692 181 + . . scaffold632 WUBlastX LINE_L1-Tx1 483695 484015 219 + . . scaffold632 WUBlastX LINE_L1-Tx1 484036 484575 183 + . . scaffold632 WUBlastX LINE_L1-Tx1 484649 485137 40 + . . scaffold632 WUBlastX LINE_L1 485766 486173 42 + . . scaffold632 WUBlastX LINE_L1-Tx1 485814 486158 70 + . . scaffold632 TRF Tandem_Repeat 492969 493708 848 + . . scaffold632 TRF Tandem_Repeat 494347 494781 556 + . . scaffold632 TRF Tandem_Repeat 502654 502876 446 + . . scaffold632 WUBlastX LINE_L2 509467 510576 215 - . . scaffold632 WUBlastX LINE_CR1-L2 510186 511268 589 - . . scaffold632 WUBlastX LINE_L2 511258 511317 22 - . . scaffold632 WUBlastX LINE_CR1 511304 511612 40 - . . scaffold632 WUBlastX LINE_CR1-L2 511376 511618 59 - . . scaffold632 WUBlastX LINE_CR1-L2 511602 511799 98 - . . scaffold632 WUBlastX LINE_CR1-L2 511617 511838 90 - . . scaffold632 WUBlastX LINE_CR1-L2 511810 511959 27 - . . scaffold632 WUBlastX LINE_L2 512075 512122 22 - . . scaffold632 WUBlastX LINE_L1 512090 512128 21 - . . scaffold632 TRF Tandem_Repeat 512442 512500 118 + . . scaffold632 WUBlastX LINE_L2 512581 512712 35 - . . scaffold632 WUBlastX LINE_L2 512605 512808 38 - . . scaffold632 WUBlastX LINE_L2 512617 512727 48 - . . scaffold632 WUBlastX LINE_L2 512635 512727 64 - . . scaffold632 GLEAN promoter 516552 517551 0.258351 - . ID=CGI_10018460; scaffold632 GLEAN mRNA 521423 527008 1 - . ID=CGI_10018461; scaffold632 GLEAN promoter 527009 528008 1 - . ID=CGI_10018461; scaffold632 GLEAN mRNA 528198 535150 0.999517 - . ID=CGI_10018462; scaffold632 GLEAN promoter 535151 536150 0.999517 - . ID=CGI_10018462; scaffold632 GLEAN mRNA 538744 553946 1 - . ID=CGI_10018463; scaffold632 TRF Tandem_Repeat 539275 539312 58 + . . scaffold632 TRF Tandem_Repeat 541959 542005 62 + . . scaffold632 TRF Tandem_Repeat 543207 544074 1479 + . . scaffold632 TRF Tandem_Repeat 547170 547222 106 + . . scaffold632 GLEAN promoter 553947 554946 1 - . ID=CGI_10018463; scaffold633 GLEAN promoter 4752 5751 0.96635 + . ID=CGI_10004267; scaffold633 GLEAN mRNA 5752 10505 0.96635 + . ID=CGI_10004267; scaffold633 TRF Tandem_Repeat 10673 10747 150 + . . scaffold633 GLEAN mRNA 18015 46855 0.77454 - . ID=CGI_10004268; scaffold633 WUBlastX LINE_L1-Tx1 19991 21067 158 + . . scaffold633 WUBlastX LINE_L1-Tx1 20207 21493 425 + . . scaffold633 TRF Tandem_Repeat 27059 27085 54 + . . scaffold633 GLEAN promoter 46856 47855 0.77454 - . ID=CGI_10004268; scaffold633 GLEAN promoter 48171 49170 0.82948 + . ID=CGI_10004269; scaffold633 GLEAN mRNA 49171 62840 0.82948 + . ID=CGI_10004269; scaffold633 WUBlastX LINE_Penelope 54078 54476 43 - . . scaffold633 WUBlastX LINE_L1 56639 57370 35 + . . scaffold633 WUBlastX LINE_L2 56822 57517 117 + . . scaffold633 WUBlastX LINE_L2 56924 57457 134 + . . scaffold633 TRF Tandem_Repeat 64151 64178 56 + . . scaffold633 WUBlastX LINE_RTE-X 65897 66085 53 - . . scaffold633 GLEAN promoter 67584 68583 0.999999 + . ID=CGI_10004270; scaffold633 GLEAN mRNA 68584 73156 0.999999 + . ID=CGI_10004270; scaffold633 TRF Tandem_Repeat 75101 75581 370 + . . scaffold633 TRF Tandem_Repeat 75104 75581 512 + . . scaffold633 TRF Tandem_Repeat 75105 75581 667 + . . scaffold633 GLEAN promoter 81288 82287 0.990131 + . ID=CGI_10004271; scaffold633 GLEAN mRNA 82288 83967 0.990131 + . ID=CGI_10004271; scaffold633 TRF Tandem_Repeat 84818 84861 52 + . . scaffold633 TRF Tandem_Repeat 95714 95761 55 + . . scaffold634 WUBlastX LTR_Pao 2079 2222 25 + . . scaffold634 WUBlastX LTR_Pao 2483 2956 86 + . . scaffold634 WUBlastX LTR_Pao 3203 4120 129 + . . scaffold634 WUBlastX LTR_Pao 3536 4117 143 + . . scaffold634 WUBlastX LTR_Pao 4213 4500 72 + . . scaffold634 WUBlastX LTR_Pao 4423 4587 37 + . . scaffold634 WUBlastX LTR_Pao 4589 4726 47 + . . scaffold634 WUBlastX LTR_Pao 4729 4827 26 + . . scaffold634 WUBlastX LTR_Pao 4729 4812 31 + . . scaffold634 WUBlastX LTR_Pao 5741 5788 22 + . . scaffold634 WUBlastX LTR_Pao 5756 6193 43 + . . scaffold634 WUBlastX LTR_Pao 5916 6410 67 + . . scaffold634 WUBlastX LTR_Pao 6006 6494 80 + . . scaffold634 WUBlastX LTR_Pao 6006 6416 91 + . . scaffold634 WUBlastX LTR_Pao 6622 6756 27 + . . scaffold634 WUBlastX LTR_Pao 6646 6765 59 + . . scaffold634 WUBlastX LTR_Pao 6755 6898 57 + . . scaffold634 WUBlastX LTR_Pao 6755 6961 54 + . . scaffold634 WUBlastX LTR_Pao 7101 7424 288 + . . scaffold634 WUBlastX LTR_Pao 7423 7803 214 + . . scaffold634 WUBlastX LTR_Pao 7818 7916 26 + . . scaffold634 WUBlastX LTR_Pao 7839 7916 30 + . . scaffold634 WUBlastX DNA_TcMar-Marin 8229 8315 30 - . . scaffold634 WUBlastX DNA_TcMar-Marin 8303 8581 37 - . . scaffold634 WUBlastX DNA_TcMar-Marin 8384 8686 74 - . . scaffold634 WUBlastX DNA_TcMar-Marin 8581 8919 42 - . . scaffold634 WUBlastX DNA_TcMar-Marin 8584 8862 73 - . . scaffold634 GLEAN promoter 11476 12475 0.999899 + . ID=CGI_10004698; scaffold634 GLEAN mRNA 12476 30002 0.999899 + . ID=CGI_10004698; scaffold634 GLEAN mRNA 13613 16152 0.502171 - . ID=CGI_10004699; scaffold634 WUBlastX LTR_Gypsy 14117 14698 54 - . . scaffold634 WUBlastX LTR_Gypsy 14207 14629 95 - . . scaffold634 WUBlastX LTR_Gypsy 14255 14755 66 - . . scaffold634 WUBlastX LTR_Gypsy 14792 15538 131 - . . scaffold634 WUBlastX LTR_Gypsy 14984 15697 57 - . . scaffold634 WUBlastX LTR_Gypsy-Cigr 15020 15559 175 - . . scaffold634 GLEAN promoter 16153 17152 0.502171 - . ID=CGI_10004699; scaffold634 TRF Tandem_Repeat 16755 16779 50 + . . scaffold634 TRF Tandem_Repeat 18018 18097 160 + . . scaffold634 TRF Tandem_Repeat 28570 28733 202 + . . scaffold634 TRF Tandem_Repeat 28575 28758 199 + . . scaffold634 TRF Tandem_Repeat 28794 28968 127 + . . scaffold634 TRF Tandem_Repeat 28837 28969 151 + . . scaffold634 WUBlastX LINE_RTE-X 32798 33565 96 + . . scaffold634 WUBlastX LINE_RTE-X 32798 33445 116 + . . scaffold634 TRF Tandem_Repeat 35211 35256 92 + . . scaffold634 TRF Tandem_Repeat 55651 55693 86 + . . scaffold634 GLEAN mRNA 60064 70484 0.999675 - . ID=CGI_10004700; scaffold634 GLEAN promoter 70485 71484 0.999675 - . ID=CGI_10004700; scaffold634 TRF Tandem_Repeat 72638 72692 110 + . . scaffold634 TRF Tandem_Repeat 74069 74096 56 + . . scaffold634 TRF Tandem_Repeat 83822 83867 92 + . . scaffold634 TRF Tandem_Repeat 84321 84346 52 + . . scaffold634 TRF Tandem_Repeat 102681 102728 96 + . . scaffold634 TRF Tandem_Repeat 103585 104821 492 + . . scaffold634 TRF Tandem_Repeat 103587 103939 181 + . . scaffold634 TRF Tandem_Repeat 103765 104091 165 + . . scaffold635 GLEAN mRNA 1291 1734 0.999039 - . ID=CGI_10008916; scaffold635 GLEAN promoter 1735 2734 0.999039 - . ID=CGI_10008916; scaffold635 GLEAN mRNA 4807 37724 0.999676 - . ID=CGI_10008917; scaffold635 TRF Tandem_Repeat 10245 10294 75 + . . scaffold635 TRF Tandem_Repeat 11094 11190 117 + . . scaffold635 TRF Tandem_Repeat 29128 29472 406 + . . scaffold635 TRF Tandem_Repeat 30973 31266 305 + . . scaffold635 TRF Tandem_Repeat 30973 31224 330 + . . scaffold635 GLEAN promoter 37725 38724 0.999676 - . ID=CGI_10008917; scaffold635 GLEAN mRNA 42118 43361 0.864745 - . ID=CGI_10008918; scaffold635 GLEAN promoter 43362 44361 0.864745 - . ID=CGI_10008918; scaffold635 WUBlastX LTR_Gypsy-Cigr 44492 45190 127 + . . scaffold635 WUBlastX LTR_Gypsy 44729 45499 182 + . . scaffold635 WUBlastX LTR_Gypsy 44873 45652 100 + . . scaffold635 WUBlastX DNA_IS4EU 55934 56266 49 + . . scaffold635 TRF Tandem_Repeat 56660 56685 52 + . . scaffold635 GLEAN mRNA 57167 59861 0.834155 - . ID=CGI_10008919; scaffold635 WUBlastX DNA_hAT 57779 58090 59 - . . scaffold635 GLEAN promoter 59862 60861 0.834155 - . ID=CGI_10008919; scaffold635 WUBlastX LINE_RTE-X 64526 64618 25 - . . scaffold635 WUBlastX LINE_CR1-L2 88185 88457 65 + . . scaffold635 TRF Tandem_Repeat 89183 89427 328 + . . scaffold635 TRF Tandem_Repeat 89184 89483 288 + . . scaffold635 TRF Tandem_Repeat 89184 89473 227 + . . scaffold635 GLEAN mRNA 104393 104812 0.613681 - . ID=CGI_10008920; scaffold635 GLEAN promoter 104813 105812 0.613681 - . ID=CGI_10008920; scaffold635 TRF Tandem_Repeat 106730 106778 64 + . . scaffold635 WUBlastX DNA_Harbinger 107312 107575 107 + . . scaffold635 WUBlastX DNA_Harbinger 107592 107666 20 + . . scaffold635 TRF Tandem_Repeat 107843 107879 74 + . . scaffold635 WUBlastX DNA_Harbinger 107920 108117 117 - . . scaffold635 WUBlastX DNA_Harbinger 107923 108210 63 - . . scaffold635 WUBlastX DNA_Harbinger 108210 108371 30 - . . scaffold635 WUBlastX DNA_Harbinger 108349 108504 51 - . . scaffold635 GLEAN mRNA 112370 113641 0.593389 - . ID=CGI_10008921; scaffold635 GLEAN promoter 113642 114641 0.593389 - . ID=CGI_10008921; scaffold635 GLEAN mRNA 115264 124278 0.98729 - . ID=CGI_10008922; scaffold635 WUBlastX LTR_Gypsy 115768 116355 172 - . . scaffold635 WUBlastX LTR_Gypsy 115861 116391 221 - . . scaffold635 WUBlastX LTR_Gypsy 116354 116488 98 - . . scaffold635 WUBlastX LTR_Gypsy 116393 116611 41 - . . scaffold635 WUBlastX LTR_Gypsy 116592 116681 22 - . . scaffold635 WUBlastX LTR_Gypsy 116683 116775 22 - . . scaffold635 WUBlastX LTR_Gypsy-Cigr 117786 117965 70 - . . scaffold635 WUBlastX LTR_Gypsy 117822 118010 75 - . . scaffold635 WUBlastX LTR_Gypsy-Cigr 117822 117965 85 - . . scaffold635 GLEAN promoter 124279 125278 0.98729 - . ID=CGI_10008922; scaffold635 TRF Tandem_Repeat 124601 124640 71 + . . scaffold635 TRF Tandem_Repeat 127227 127375 206 + . . scaffold635 GLEAN mRNA 137474 141347 0.99106 - . ID=CGI_10008923; scaffold635 GLEAN promoter 141348 142347 0.99106 - . ID=CGI_10008923; scaffold635 GLEAN promoter 146742 147741 1 + . ID=CGI_10008924; scaffold635 GLEAN mRNA 147742 153629 1 + . ID=CGI_10008924; scaffold635 TRF Tandem_Repeat 148760 148795 72 + . . scaffold635 GLEAN mRNA 156356 158007 0.999981 - . ID=CGI_10008925; scaffold635 GLEAN promoter 158008 159007 0.999981 - . ID=CGI_10008925; scaffold635 GLEAN promoter 158918 159917 0.558394 + . ID=CGI_10008926; scaffold635 GLEAN mRNA 159918 166800 0.558394 + . ID=CGI_10008926; scaffold635 TRF Tandem_Repeat 165192 165253 56 + . . scaffold635 TRF Tandem_Repeat 168277 168600 306 + . . scaffold635 TRF Tandem_Repeat 168334 168600 117 + . . scaffold635 TRF Tandem_Repeat 178452 178768 244 + . . scaffold635 TRF Tandem_Repeat 184035 184074 80 + . . scaffold635 GLEAN mRNA 188639 191372 0.990258 - . ID=CGI_10008927; scaffold635 GLEAN promoter 191373 192372 0.990258 - . ID=CGI_10008927; scaffold635 GLEAN mRNA 194653 217314 0.999676 - . ID=CGI_10008928; scaffold635 GLEAN promoter 210701 211700 0.5 + . ID=CGI_10008929; scaffold635 GLEAN mRNA 211701 219593 0.5 + . ID=CGI_10008929; scaffold635 GLEAN promoter 217315 218314 0.999676 - . ID=CGI_10008928; scaffold636 GLEAN promoter 1 620 0.813932 + . ID=CGI_10003733; scaffold636 GLEAN mRNA 621 40115 0.813932 + . ID=CGI_10003733; scaffold636 TRF Tandem_Repeat 1490 1563 148 + . . scaffold636 TRF Tandem_Repeat 6099 6991 918 + . . scaffold636 TRF Tandem_Repeat 7854 7890 65 + . . scaffold636 TRF Tandem_Repeat 8687 9492 1328 + . . scaffold636 TRF Tandem_Repeat 12022 12797 1040 + . . scaffold636 TRF Tandem_Repeat 14458 14843 476 + . . scaffold636 TRF Tandem_Repeat 14899 14989 146 + . . scaffold636 TRF Tandem_Repeat 14955 15044 99 + . . scaffold636 TRF Tandem_Repeat 16643 16749 142 + . . scaffold636 TRF Tandem_Repeat 16804 17040 465 + . . scaffold636 TRF Tandem_Repeat 19914 20166 488 + . . scaffold636 TRF Tandem_Repeat 21224 21376 252 + . . scaffold636 TRF Tandem_Repeat 21822 22254 724 + . . scaffold636 TRF Tandem_Repeat 22369 22402 52 + . . scaffold636 TRF Tandem_Repeat 27167 27424 285 + . . scaffold636 TRF Tandem_Repeat 37003 37277 433 + . . scaffold636 TRF Tandem_Repeat 38519 38724 324 + . . scaffold636 TRF Tandem_Repeat 40036 40307 365 + . . scaffold636 WUBlastX LINE_L1-Tx1 42937 43176 111 + . . scaffold636 TRF Tandem_Repeat 64289 64331 86 + . . scaffold636 WUBlastX DNA_TcMar-Marin 74358 74648 66 + . . scaffold639 GLEAN promoter 1 956 0.999676 + . ID=CGI_10000408; scaffold639 GLEAN mRNA 957 4557 0.999676 + . ID=CGI_10000408; scaffold64 TRF Tandem_Repeat 419 667 216 + . . scaffold64 TRF Tandem_Repeat 419 669 167 + . . scaffold64 TRF Tandem_Repeat 419 669 226 + . . scaffold64 GLEAN mRNA 1190 11123 0.999999 - . ID=CGI_10005749; scaffold64 TRF Tandem_Repeat 1321 1444 230 + . . scaffold64 GLEAN promoter 11124 12123 0.999999 - . ID=CGI_10005749; scaffold64 TRF Tandem_Repeat 15983 16032 100 + . . scaffold64 TRF Tandem_Repeat 16752 16805 108 + . . scaffold64 TRF Tandem_Repeat 17061 17132 135 + . . scaffold64 GLEAN promoter 21495 22494 0.972109 + . ID=CGI_10005750; scaffold64 GLEAN mRNA 22495 48676 0.972109 + . ID=CGI_10005750; scaffold64 GLEAN mRNA 38501 60704 0.934793 - . ID=CGI_10005751; scaffold64 TRF Tandem_Repeat 40024 40057 68 + . . scaffold64 TRF Tandem_Repeat 52960 52992 57 + . . scaffold64 GLEAN promoter 60705 61704 0.934793 - . ID=CGI_10005751; scaffold64 WUBlastX LTR_DIRS 64546 65820 245 - . . scaffold64 WUBlastX LTR_DIRS 64552 65574 484 - . . scaffold64 WUBlastX LTR_DIRS 65708 66220 70 - . . scaffold64 TRF Tandem_Repeat 69773 69907 78 + . . scaffold64 TRF Tandem_Repeat 69796 70041 393 + . . scaffold64 TRF Tandem_Repeat 73066 73385 444 + . . scaffold64 TRF Tandem_Repeat 73076 73228 66 + . . scaffold64 GLEAN mRNA 73939 76013 0.982851 - . ID=CGI_10005752; scaffold64 GLEAN promoter 76014 77013 0.982851 - . ID=CGI_10005752; scaffold64 TRF Tandem_Repeat 78002 78447 262 + . . scaffold64 TRF Tandem_Repeat 88071 88125 110 + . . scaffold64 TRF Tandem_Repeat 109729 109795 134 + . . scaffold64 WUBlastX DNA_Harbinger 114280 114492 79 + . . scaffold64 WUBlastX DNA_Harbinger 117085 117243 47 + . . scaffold64 WUBlastX DNA_Harbinger 117085 117219 113 + . . scaffold64 WUBlastX DNA_Harbinger 117246 117416 174 + . . scaffold64 WUBlastX DNA_Harbinger 117300 117443 65 + . . scaffold64 WUBlastX DNA_Harbinger 117687 118163 304 + . . scaffold64 GLEAN mRNA 118246 132595 0.997548 - . ID=CGI_10005753; scaffold64 WUBlastX DNA_Harbinger 119817 120026 72 + . . scaffold64 GLEAN promoter 121281 122280 0.73346 + . ID=CGI_10005754; scaffold64 GLEAN mRNA 122281 122871 0.73346 + . ID=CGI_10005754; scaffold64 WUBlastX DNA_Harbinger 124610 125065 301 + . . scaffold64 WUBlastX DNA_Harbinger 127225 127548 155 - . . scaffold64 GLEAN promoter 132596 133595 0.997548 - . ID=CGI_10005753; scaffold640 TRF Tandem_Repeat 2635 2662 56 + . . scaffold640 TRF Tandem_Repeat 2664 2762 198 + . . scaffold640 TRF Tandem_Repeat 3679 3745 134 + . . scaffold640 GLEAN mRNA 12435 37183 0.673322 - . ID=CGI_10007636; scaffold640 TRF Tandem_Repeat 15227 15288 115 + . . scaffold640 TRF Tandem_Repeat 15286 15315 60 + . . scaffold640 TRF Tandem_Repeat 28391 28433 86 + . . scaffold640 TRF Tandem_Repeat 31192 31232 82 + . . scaffold640 GLEAN promoter 37184 38183 0.673322 - . ID=CGI_10007636; scaffold640 GLEAN promoter 37275 38274 0.999676 + . ID=CGI_10007637; scaffold640 GLEAN mRNA 38275 41625 0.999676 + . ID=CGI_10007637; scaffold640 TRF Tandem_Repeat 43931 43974 88 + . . scaffold640 GLEAN promoter 44356 45355 1 + . ID=CGI_10007638; scaffold640 GLEAN mRNA 45356 46237 1 + . ID=CGI_10007638; scaffold640 GLEAN mRNA 64575 68041 1 - . ID=CGI_10007639; scaffold640 GLEAN promoter 68042 69041 1 - . ID=CGI_10007639; scaffold640 TRF Tandem_Repeat 73858 74070 198 + . . scaffold640 TRF Tandem_Repeat 73918 74070 216 + . . scaffold640 WUBlastX LINE_RTE-X 78588 79748 507 + . . scaffold640 TRF Tandem_Repeat 85333 85363 62 + . . scaffold640 TRF Tandem_Repeat 91167 91283 207 + . . scaffold640 GLEAN mRNA 92126 109820 0.907652 - . ID=CGI_10007640; scaffold640 GLEAN promoter 109821 110820 0.907652 - . ID=CGI_10007640; scaffold640 GLEAN promoter 114244 115243 1 + . ID=CGI_10007641; scaffold640 GLEAN mRNA 115244 118704 1 + . ID=CGI_10007641; scaffold640 GLEAN promoter 118942 119941 1 + . ID=CGI_10007642; scaffold640 GLEAN mRNA 119942 121125 1 + . ID=CGI_10007642; scaffold640 TRF Tandem_Repeat 125786 125838 106 + . . scaffold640 GLEAN promoter 126468 127467 1 + . ID=CGI_10007643; scaffold640 GLEAN mRNA 127468 130946 1 + . ID=CGI_10007643; scaffold640 WUBlastX LTR_Gypsy 146319 147791 1029 - . . scaffold640 WUBlastX LTR_Gypsy-Cigr 147806 148894 623 - . . scaffold640 WUBlastX LTR_Gypsy 148127 148879 710 - . . scaffold640 WUBlastX LTR_Gypsy 148882 150330 704 - . . scaffold640 WUBlastX LTR_Gypsy 150049 150504 22 - . . scaffold640 WUBlastX LTR_Gypsy 150148 150435 35 - . . scaffold640 TRF Tandem_Repeat 155045 155103 75 + . . scaffold640 WUBlastX LTR_Pao 155127 155297 123 - . . scaffold640 GLEAN promoter 168764 169763 0.999706 + . ID=CGI_10007644; scaffold640 GLEAN mRNA 169764 172454 0.999706 + . ID=CGI_10007644; scaffold640 WUBlastX LINE_L1-Tx1 174901 175398 249 + . . scaffold640 GLEAN promoter 178574 179573 0.99982 + . ID=CGI_10007645; scaffold640 GLEAN mRNA 179574 180468 0.99982 + . ID=CGI_10007645; scaffold640 TRF Tandem_Repeat 181180 181232 106 + . . scaffold640 TRF Tandem_Repeat 181968 182019 104 + . . scaffold640 GLEAN promoter 183899 184898 0.999984 + . ID=CGI_10007646; scaffold640 GLEAN mRNA 184899 185864 0.999984 + . ID=CGI_10007646; scaffold640 GLEAN mRNA 186070 186899 1 - . ID=CGI_10007647; scaffold640 GLEAN promoter 186900 187054 1 - . ID=CGI_10007647; scaffold641 GLEAN promoter 1 528 1 + . ID=CGI_10000322; scaffold641 GLEAN mRNA 529 1733 1 + . ID=CGI_10000322; scaffold642 GLEAN promoter 1 575 0.99999 + . ID=CGI_10002435; scaffold642 GLEAN mRNA 576 4701 0.99999 + . ID=CGI_10002435; scaffold642 GLEAN promoter 26884 27883 0.990768 + . ID=CGI_10002436; scaffold642 GLEAN mRNA 27884 39519 0.990768 + . ID=CGI_10002436; scaffold643 GLEAN mRNA 16056 21326 0.999072 - . ID=CGI_10002914; scaffold643 TRF Tandem_Repeat 17691 17738 96 + . . scaffold643 TRF Tandem_Repeat 18078 18112 61 + . . scaffold643 GLEAN promoter 21327 22326 0.999072 - . ID=CGI_10002914; scaffold643 WUBlastX DNA_NOF 25208 25597 49 - . . scaffold643 WUBlastX DNA_IS4EU 25388 25579 65 - . . scaffold643 GLEAN promoter 28254 29253 0.998617 + . ID=CGI_10002915; scaffold643 GLEAN mRNA 29254 33836 0.998617 + . ID=CGI_10002915; scaffold643 TRF Tandem_Repeat 31798 31854 114 + . . scaffold643 GLEAN promoter 36505 37504 1 + . ID=CGI_10002916; scaffold643 GLEAN mRNA 37505 37963 1 + . ID=CGI_10002916; scaffold643 GLEAN promoter 42682 43681 0.840359 + . ID=CGI_10002917; scaffold643 TRF Tandem_Repeat 43298 43340 52 + . . scaffold643 GLEAN mRNA 43682 52233 0.840359 + . ID=CGI_10002917; scaffold643 TRF Tandem_Repeat 54852 55455 732 + . . scaffold643 TRF Tandem_Repeat 54852 55372 730 + . . scaffold643 TRF Tandem_Repeat 55017 55457 261 + . . scaffold643 TRF Tandem_Repeat 55101 55457 354 + . . scaffold643 TRF Tandem_Repeat 55102 55208 78 + . . scaffold643 GLEAN promoter 55289 56288 1 + . ID=CGI_10002918; scaffold643 GLEAN mRNA 56289 59177 1 + . ID=CGI_10002918; scaffold644 GLEAN mRNA 1009 8217 0.621909 - . ID=CGI_10004147; scaffold644 GLEAN promoter 8218 9217 0.621909 - . ID=CGI_10004147; scaffold644 TRF Tandem_Repeat 8873 8927 110 + . . scaffold644 GLEAN promoter 9819 10818 0.072343 + . ID=CGI_10004148; scaffold644 GLEAN mRNA 10819 18638 0.072343 + . ID=CGI_10004148; scaffold644 TRF Tandem_Repeat 14216 14271 112 + . . scaffold644 GLEAN mRNA 18896 21684 0.988106 - . ID=CGI_10004149; scaffold644 GLEAN promoter 21685 22684 0.988106 - . ID=CGI_10004149; scaffold644 GLEAN mRNA 28194 34782 0.783968 - . ID=CGI_10004150; scaffold644 TRF Tandem_Repeat 34251 34304 99 + . . scaffold644 GLEAN promoter 34783 35782 0.783968 - . ID=CGI_10004150; scaffold644 TRF Tandem_Repeat 35559 35780 345 + . . scaffold644 TRF Tandem_Repeat 36284 36375 157 + . . scaffold644 WUBlastX LINE_R2-Hero 49909 50043 70 + . . scaffold644 GLEAN mRNA 57944 62856 0.99814 - . ID=CGI_10004151; scaffold644 GLEAN promoter 62857 63856 0.99814 - . ID=CGI_10004151; scaffold644 TRF Tandem_Repeat 72110 72153 88 + . . scaffold644 WUBlastX LINE_L1-Tx1 84146 84244 20 - . . scaffold644 WUBlastX LINE_L1-Tx1 84528 84821 28 - . . scaffold644 WUBlastX LINE_L1-Tx1 84590 84682 33 - . . scaffold644 WUBlastX LINE_L1-Tx1 84684 84824 43 - . . scaffold644 WUBlastX LINE_L1-Tx1 84693 84803 63 - . . scaffold644 WUBlastX LINE_L1-Tx1 84841 84900 40 - . . scaffold644 WUBlastX LINE_L1-Tx1 84880 85152 62 - . . scaffold644 WUBlastX LINE_L1-Tx1 84904 85011 78 - . . scaffold644 WUBlastX LINE_L1 84904 85038 73 - . . scaffold644 WUBlastX LINE_L1-Tx1 84904 85200 38 - . . scaffold645 GLEAN promoter 1 917 0.999821 + . ID=CGI_10003781; scaffold645 TRF Tandem_Repeat 1 713 1150 + . . scaffold645 TRF Tandem_Repeat 1 713 1304 + . . scaffold645 GLEAN mRNA 918 3959 0.999821 + . ID=CGI_10003781; scaffold645 TRF Tandem_Repeat 2961 3368 798 + . . scaffold645 TRF Tandem_Repeat 7148 7349 296 + . . scaffold645 TRF Tandem_Repeat 7413 7551 107 + . . scaffold645 TRF Tandem_Repeat 7593 8011 489 + . . scaffold645 TRF Tandem_Repeat 7605 8011 234 + . . scaffold645 TRF Tandem_Repeat 31730 31764 70 + . . scaffold645 WUBlastX DNA_Crypton 36836 37360 317 + . . scaffold645 WUBlastX DNA_Crypton 37420 37860 241 + . . scaffold645 TRF Tandem_Repeat 43613 43717 84 + . . scaffold645 TRF Tandem_Repeat 49932 49965 50 + . . scaffold645 TRF Tandem_Repeat 50112 50145 50 + . . scaffold645 TRF Tandem_Repeat 52736 52769 50 + . . scaffold645 TRF Tandem_Repeat 52916 52949 50 + . . scaffold645 WUBlastX LINE_Penelope 56503 56904 70 - . . scaffold645 TRF Tandem_Repeat 57208 58063 1221 + . . scaffold645 TRF Tandem_Repeat 71067 71107 57 + . . scaffold645 TRF Tandem_Repeat 76286 76369 161 + . . scaffold645 TRF Tandem_Repeat 78716 78748 66 + . . scaffold646 GLEAN mRNA 164 15242 0.999999 - . ID=CGI_10001123; scaffold646 GLEAN promoter 15243 15243 0.999999 - . ID=CGI_10001123; scaffold647 TRF Tandem_Repeat 10192 10240 53 + . . scaffold647 WUBlastX DNA_TcMar-Tc1 10969 11436 167 - . . scaffold647 WUBlastX DNA_TcMar-Tc1 11124 11858 223 - . . scaffold647 TRF Tandem_Repeat 13339 13392 81 + . . scaffold647 TRF Tandem_Repeat 14594 14647 108 + . . scaffold647 WUBlastX LTR_Gypsy 17405 18661 677 - . . scaffold647 WUBlastX LTR_Gypsy 18750 21713 744 - . . scaffold647 WUBlastX LTR_Gypsy 18834 20990 1353 - . . scaffold647 WUBlastX LTR_Gypsy 20616 21950 74 - . . scaffold647 WUBlastX LTR_Gypsy 21597 22082 37 - . . scaffold647 WUBlastX LTR_Gypsy 24126 24614 79 - . . scaffold647 TRF Tandem_Repeat 36589 37060 802 + . . scaffold647 GLEAN promoter 37440 38439 0.988865 + . ID=CGI_10006923; scaffold647 GLEAN mRNA 38440 49533 0.988865 + . ID=CGI_10006923; scaffold647 TRF Tandem_Repeat 48170 48205 72 + . . scaffold647 GLEAN mRNA 50031 60378 0.614411 - . ID=CGI_10006924; scaffold647 TRF Tandem_Repeat 58696 58793 178 + . . scaffold647 GLEAN promoter 60379 61378 0.614411 - . ID=CGI_10006924; scaffold647 TRF Tandem_Repeat 74682 74706 50 + . . scaffold647 TRF Tandem_Repeat 80219 80244 52 + . . scaffold647 TRF Tandem_Repeat 80243 80293 95 + . . scaffold647 GLEAN mRNA 80691 93730 0.843182 - . ID=CGI_10006925; scaffold647 TRF Tandem_Repeat 86359 86420 65 + . . scaffold647 GLEAN promoter 93731 94730 0.843182 - . ID=CGI_10006925; scaffold647 GLEAN mRNA 96720 97355 0.999988 - . ID=CGI_10006926; scaffold647 GLEAN promoter 97356 98355 0.999988 - . ID=CGI_10006926; scaffold647 GLEAN mRNA 97693 97929 0.999988 - . ID=CGI_10006927; scaffold647 GLEAN promoter 97930 98929 0.999988 - . ID=CGI_10006927; scaffold647 GLEAN mRNA 98171 102340 0.777888 - . ID=CGI_10006928; scaffold647 GLEAN promoter 101595 102594 0.988703 + . ID=CGI_10006929; scaffold647 TRF Tandem_Repeat 101607 101674 102 + . . scaffold647 GLEAN promoter 102341 103340 0.777888 - . ID=CGI_10006928; scaffold647 GLEAN mRNA 102595 106196 0.988703 + . ID=CGI_10006929; scaffold647 TRF Tandem_Repeat 104880 104910 62 + . . scaffold647 WUBlastX LINE_RTE-X 106769 107224 99 - . . scaffold647 WUBlastX LINE_I 107111 107254 51 - . . scaffold647 GLEAN mRNA 111884 113712 0.994134 - . ID=CGI_10006930; scaffold647 GLEAN promoter 113713 114712 0.994134 - . ID=CGI_10006930; scaffold647 TRF Tandem_Repeat 116111 116171 122 + . . scaffold647 TRF Tandem_Repeat 118269 118834 334 + . . scaffold647 TRF Tandem_Repeat 118269 118834 508 + . . scaffold647 WUBlastX LINE_Penelope 123075 123221 34 - . . scaffold647 WUBlastX LINE_Penelope 123188 123451 84 - . . scaffold647 TRF Tandem_Repeat 123458 123738 339 + . . scaffold647 GLEAN promoter 123845 124844 0.631256 + . ID=CGI_10006931; scaffold647 GLEAN mRNA 124845 138037 0.631256 + . ID=CGI_10006931; scaffold647 TRF Tandem_Repeat 126241 126734 988 + . . scaffold647 TRF Tandem_Repeat 127188 127221 68 + . . scaffold647 TRF Tandem_Repeat 130403 130768 405 + . . scaffold647 TRF Tandem_Repeat 133417 133472 55 + . . scaffold647 TRF Tandem_Repeat 135235 135284 100 + . . scaffold647 WUBlastX LINE_L1-Tx1 135378 135710 32 - . . scaffold647 WUBlastX LINE_L1-Tx1 136466 137089 129 - . . scaffold647 WUBlastX LINE_L1-Tx1 136568 137107 248 - . . scaffold647 WUBlastX DNA_Sola 142639 143013 72 - . . scaffold647 WUBlastX DNA_Sola 143018 143086 42 - . . scaffold647 TRF Tandem_Repeat 148649 148697 53 + . . scaffold647 TRF Tandem_Repeat 148649 148697 62 + . . scaffold647 WUBlastX DNA_Harbinger 152976 153227 131 - . . scaffold647 WUBlastX DNA_Harbinger 153015 153335 141 - . . scaffold647 WUBlastX DNA_Harbinger 153400 153693 122 - . . scaffold647 TRF Tandem_Repeat 154071 154101 62 + . . scaffold647 WUBlastX LTR_Gypsy 156368 157321 657 - . . scaffold647 WUBlastX LTR_Gypsy 157318 158121 696 - . . scaffold647 TRF Tandem_Repeat 159429 159487 82 + . . scaffold647 TRF Tandem_Repeat 159429 159470 57 + . . scaffold647 TRF Tandem_Repeat 159432 159487 67 + . . scaffold647 TRF Tandem_Repeat 159436 159487 59 + . . scaffold647 WUBlastX LTR_Gypsy 161372 162187 40 - . . scaffold647 WUBlastX LTR_Gypsy 161507 165268 3345 - . . scaffold649 GLEAN mRNA 3383 7636 1 - . ID=CGI_10000634; scaffold649 GLEAN promoter 7637 8021 1 - . ID=CGI_10000634; scaffold65 TRF Tandem_Repeat 11943 11969 54 + . . scaffold65 WUBlastX LINE_RTE-X 33828 33974 60 + . . scaffold65 TRF Tandem_Repeat 34754 35512 1124 + . . scaffold65 TRF Tandem_Repeat 35601 35660 93 + . . scaffold65 TRF Tandem_Repeat 37510 37567 53 + . . scaffold65 TRF Tandem_Repeat 39309 39350 84 + . . scaffold65 TRF Tandem_Repeat 42668 42729 90 + . . scaffold65 WUBlastX DNA_Zator 45349 45480 61 - . . scaffold65 WUBlastX DNA_Zator 45946 46104 21 - . . scaffold65 WUBlastX DNA_Zator 45946 46032 26 - . . scaffold65 WUBlastX DNA_Zator 47003 47995 306 - . . scaffold65 WUBlastX DNA_Zator 47961 48086 39 - . . scaffold65 TRF Tandem_Repeat 63418 63620 339 + . . scaffold65 TRF Tandem_Repeat 65833 67013 1428 + . . scaffold65 GLEAN promoter 71665 72664 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 71944 72100 278 + . . scaffold65 GLEAN mRNA 72665 114467 0.443861 + . ID=CGI_10006430; scaffold65 TRF Tandem_Repeat 75805 76063 293 + . . scaffold65 TRF Tandem_Repeat 75950 76037 50 + . . scaffold65 TRF Tandem_Repeat 76523 76564 84 + . . scaffold65 TRF Tandem_Repeat 82708 82742 70 + . . scaffold65 TRF Tandem_Repeat 82893 82942 64 + . . scaffold65 TRF Tandem_Repeat 84936 85032 104 + . . scaffold65 TRF Tandem_Repeat 86875 87024 89 + . . scaffold65 TRF Tandem_Repeat 86891 87016 108 + . . scaffold65 TRF Tandem_Repeat 100048 100549 782 + . . scaffold65 TRF Tandem_Repeat 100048 100545 763 + . . scaffold65 TRF Tandem_Repeat 101712 101969 275 + . . scaffold65 TRF Tandem_Repeat 104490 105018 871 + . . scaffold65 TRF Tandem_Repeat 106233 106819 961 + . . scaffold65 TRF Tandem_Repeat 123625 123662 76 + . . scaffold65 WUBlastX LINE_RTE-X 126993 127094 26 + . . scaffold65 WUBlastX LINE_RTE-X 127020 127184 39 + . . scaffold65 WUBlastX LINE_RTE-X 127020 127097 41 + . . scaffold65 WUBlastX LINE_RTE-X 127184 128380 250 + . . scaffold65 WUBlastX LINE_RTE-X 127184 128197 404 + . . scaffold65 TRF Tandem_Repeat 130693 130742 55 + . . scaffold65 WUBlastX LINE_RTE-X 140297 140674 109 + . . scaffold65 WUBlastX LINE_RTE-X 140471 140674 122 + . . scaffold65 WUBlastX LINE_RTE-X 140671 141150 163 + . . scaffold65 WUBlastX LINE_RTE-X 140671 141270 119 + . . scaffold65 WUBlastX LINE_RTE-X 141269 141514 51 + . . scaffold65 GLEAN mRNA 142891 148690 0.996591 - . ID=CGI_10006431; scaffold65 TRF Tandem_Repeat 144372 144418 94 + . . scaffold65 GLEAN promoter 147502 148501 1 + . ID=CGI_10006432; scaffold65 GLEAN mRNA 148502 150730 1 + . ID=CGI_10006432; scaffold65 GLEAN promoter 148691 149690 0.996591 - . ID=CGI_10006431; scaffold652 WUBlastX LINE_L1-Tx1 1821 2288 63 + . . scaffold652 WUBlastX LINE_L1-Tx1 2118 2288 71 + . . scaffold654 GLEAN mRNA 1376 14130 0.499624 - . ID=CGI_10004182; scaffold654 TRF Tandem_Repeat 2148 2204 105 + . . scaffold654 WUBlastX LINE_RTE-X 3469 3660 27 + . . scaffold654 TRF Tandem_Repeat 8495 8572 140 + . . scaffold654 TRF Tandem_Repeat 10796 10910 83 + . . scaffold654 GLEAN promoter 14131 15130 0.499624 - . ID=CGI_10004182; scaffold654 GLEAN promoter 16913 17912 0.863777 + . ID=CGI_10004183; scaffold654 GLEAN mRNA 17913 25835 0.863777 + . ID=CGI_10004183; scaffold654 WUBlastX LTR_Gypsy 41252 41761 21 - . . scaffold654 WUBlastX DNA_Maverick 43301 43801 103 + . . scaffold654 WUBlastX DNA_Maverick 43884 45020 177 + . . scaffold654 WUBlastX DNA_Maverick 44736 45020 196 + . . scaffold654 WUBlastX DNA_Maverick 45100 46005 473 + . . scaffold654 WUBlastX DNA_Maverick 46014 46493 219 + . . scaffold654 WUBlastX DNA_Maverick 46489 46929 316 + . . scaffold654 GLEAN mRNA 47313 47684 0.99937 - . ID=CGI_10004184; scaffold654 GLEAN promoter 47685 48684 0.99937 - . ID=CGI_10004184; scaffold654 TRF Tandem_Repeat 47767 47842 84 + . . scaffold654 TRF Tandem_Repeat 47773 47842 65 + . . scaffold654 WUBlastX DNA_Maverick 48200 48541 54 - . . scaffold654 WUBlastX DNA_Maverick 48257 48544 74 - . . scaffold654 WUBlastX DNA_Maverick 48326 48583 103 - . . scaffold654 WUBlastX DNA_Maverick 48588 49232 376 - . . scaffold654 WUBlastX DNA_Maverick 49346 49807 282 - . . scaffold654 WUBlastX DNA_Maverick 51254 51451 42 - . . scaffold654 WUBlastX DNA_Maverick 51254 51370 46 - . . scaffold654 WUBlastX DNA_Maverick 51394 51546 38 - . . scaffold654 WUBlastX DNA_Maverick 52057 52341 45 - . . scaffold654 WUBlastX DNA_Maverick 52120 52332 84 - . . scaffold654 WUBlastX LTR_Gypsy 53350 53556 38 - . . scaffold654 WUBlastX DNA_Maverick 53392 53544 82 - . . scaffold654 WUBlastX DNA_Maverick 53540 54175 491 - . . scaffold654 WUBlastX DNA_Maverick 54180 54338 132 - . . scaffold654 WUBlastX DNA_Maverick 54346 54441 34 - . . scaffold654 WUBlastX DNA_Maverick 54456 54935 93 - . . scaffold654 WUBlastX DNA_Maverick 54585 55211 136 - . . scaffold654 WUBlastX DNA_Maverick 54630 55106 155 - . . scaffold654 WUBlastX DNA_Maverick 56937 57341 241 - . . scaffold654 WUBlastX LTR_Gypsy 57719 59119 1311 - . . scaffold654 WUBlastX LTR_Gypsy 59152 61050 1417 - . . scaffold654 WUBlastX LTR_Gypsy 59230 61605 1319 - . . scaffold654 WUBlastX LTR_Gypsy 61735 62748 564 + . . scaffold654 WUBlastX LTR_Gypsy 62790 65486 2071 + . . scaffold654 GLEAN promoter 66142 67141 1 + . ID=CGI_10004185; scaffold654 GLEAN mRNA 67142 67402 1 + . ID=CGI_10004185; scaffold654 WUBlastX LTR_ERV1 67505 67705 34 + . . scaffold654 WUBlastX LTR_ERVK 67652 67864 22 + . . scaffold654 TRF Tandem_Repeat 74709 74769 115 + . . scaffold654 WUBlastX DNA_TcMar-Tc1 78891 79226 52 + . . scaffold654 WUBlastX DNA_TcMar-Tc1 79204 79470 72 + . . scaffold654 WUBlastX DNA_TcMar-Tc1 79228 79443 148 + . . scaffold654 WUBlastX DNA_TcMar-Tc1 79479 79790 184 + . . scaffold654 TRF Tandem_Repeat 80939 80996 73 + . . scaffold654 GLEAN mRNA 83221 89215 0.999925 - . ID=CGI_10004186; scaffold654 TRF Tandem_Repeat 85661 85704 88 + . . scaffold654 GLEAN promoter 89216 90215 0.999925 - . ID=CGI_10004186; scaffold654 GLEAN mRNA 91892 92991 1 - . ID=CGI_10004187; scaffold654 GLEAN promoter 92992 93371 1 - . ID=CGI_10004187; scaffold655 GLEAN promoter 297 1296 0.965913 + . ID=CGI_10014946; scaffold655 GLEAN mRNA 1297 1545 0.965913 + . ID=CGI_10014946; scaffold655 WUBlastX LTR_Ngaro 1681 1986 149 + . . scaffold655 WUBlastX LTR_Ngaro 1723 2118 21 + . . scaffold655 WUBlastX LTR_Ngaro 2288 3850 891 + . . scaffold655 WUBlastX LTR_Ngaro 3852 4160 35 + . . scaffold655 WUBlastX LTR_Ngaro 4062 4526 84 + . . scaffold655 WUBlastX LTR_Ngaro 4275 4526 125 + . . scaffold655 TRF Tandem_Repeat 42031 42062 64 + . . scaffold655 TRF Tandem_Repeat 55555 55585 53 + . . scaffold655 TRF Tandem_Repeat 58875 58961 174 + . . scaffold655 GLEAN promoter 59667 60666 0.593388 + . ID=CGI_10014947; scaffold655 GLEAN mRNA 60667 61186 0.593388 + . ID=CGI_10014947; scaffold655 TRF Tandem_Repeat 67647 67680 68 + . . scaffold655 GLEAN mRNA 73613 75595 0.999056 - . ID=CGI_10014948; scaffold655 GLEAN promoter 75596 76595 0.999056 - . ID=CGI_10014948; scaffold655 TRF Tandem_Repeat 76209 76246 67 + . . scaffold655 TRF Tandem_Repeat 87269 87309 82 + . . scaffold655 TRF Tandem_Repeat 88779 88821 86 + . . scaffold655 TRF Tandem_Repeat 108427 108457 62 + . . scaffold655 TRF Tandem_Repeat 110954 111006 97 + . . scaffold655 WUBlastX LINE_CR1-L2 123390 124019 76 + . . scaffold655 WUBlastX LINE_L2 123486 124016 193 + . . scaffold655 TRF Tandem_Repeat 124930 125010 146 + . . scaffold655 TRF Tandem_Repeat 133197 133229 57 + . . scaffold655 TRF Tandem_Repeat 133968 133994 54 + . . scaffold655 TRF Tandem_Repeat 134430 134466 58 + . . scaffold655 TRF Tandem_Repeat 134673 134717 56 + . . scaffold655 GLEAN mRNA 146609 149753 0.979123 - . ID=CGI_10014949; scaffold655 GLEAN promoter 149754 150753 0.979123 - . ID=CGI_10014949; scaffold655 TRF Tandem_Repeat 150522 150548 54 + . . scaffold655 TRF Tandem_Repeat 150591 150641 93 + . . scaffold655 TRF Tandem_Repeat 153151 153193 86 + . . scaffold655 TRF Tandem_Repeat 170039 170073 70 + . . scaffold655 TRF Tandem_Repeat 171039 171082 79 + . . scaffold655 TRF Tandem_Repeat 172000 173116 1355 + . . scaffold655 TRF Tandem_Repeat 173183 173829 1087 + . . scaffold655 TRF Tandem_Repeat 178617 178807 253 + . . scaffold655 TRF Tandem_Repeat 185184 185506 533 + . . scaffold655 TRF Tandem_Repeat 185241 185415 104 + . . scaffold655 TRF Tandem_Repeat 185276 185447 86 + . . scaffold655 TRF Tandem_Repeat 186612 186782 153 + . . scaffold655 TRF Tandem_Repeat 187170 187511 337 + . . scaffold655 TRF Tandem_Repeat 188906 188932 54 + . . scaffold655 TRF Tandem_Repeat 192582 192638 114 + . . scaffold655 TRF Tandem_Repeat 193624 193674 102 + . . scaffold655 WUBlastX LINE_CR1-L2 199129 199674 168 + . . scaffold655 GLEAN promoter 201486 202485 0.819461 + . ID=CGI_10014950; scaffold655 GLEAN mRNA 202486 204862 0.819461 + . ID=CGI_10014950; scaffold655 WUBlastX DNA_Kolobok-Hyd 203222 203638 36 + . . scaffold655 GLEAN mRNA 204887 205264 0.99937 - . ID=CGI_10014951; scaffold655 GLEAN promoter 205265 206264 0.99937 - . ID=CGI_10014951; scaffold655 GLEAN promoter 205640 206639 0.998219 + . ID=CGI_10014952; scaffold655 GLEAN mRNA 206640 213790 0.998219 + . ID=CGI_10014952; scaffold655 WUBlastX LINE_L1 206657 206752 22 + . . scaffold655 WUBlastX LINE_CR1 207939 209108 28 + . . scaffold655 WUBlastX LINE_L1-Tx1 208155 210845 1239 + . . scaffold655 GLEAN mRNA 218890 220431 0.993583 - . ID=CGI_10014953; scaffold655 GLEAN promoter 220432 221431 0.993583 - . ID=CGI_10014953; scaffold655 GLEAN mRNA 221225 221458 0.733495 - . ID=CGI_10014954; scaffold655 GLEAN promoter 221459 222458 0.733495 - . ID=CGI_10014954; scaffold655 WUBlastX LINE_R2-Hero 222104 222370 125 - . . scaffold655 WUBlastX LINE_R2-Hero 222557 222769 45 - . . scaffold655 WUBlastX LINE_R2-Hero 222765 223151 34 - . . scaffold655 WUBlastX LINE_R2-Hero 223045 223695 99 - . . scaffold655 WUBlastX LINE_R2-Hero 223171 223695 116 - . . scaffold655 WUBlastX LINE_R2-Hero 223304 224185 143 - . . scaffold655 WUBlastX LINE_R2-Hero 223730 224185 164 - . . scaffold655 WUBlastX LINE_R2-Hero 224187 224348 58 - . . scaffold655 GLEAN mRNA 225207 258283 0.75347 - . ID=CGI_10014955; scaffold655 TRF Tandem_Repeat 252608 252757 273 + . . scaffold655 TRF Tandem_Repeat 255507 255555 98 + . . scaffold655 TRF Tandem_Repeat 257128 257173 92 + . . scaffold655 GLEAN promoter 258284 259283 0.75347 - . ID=CGI_10014955; scaffold655 TRF Tandem_Repeat 260273 260297 50 + . . scaffold655 TRF Tandem_Repeat 261965 262094 93 + . . scaffold655 TRF Tandem_Repeat 262010 262156 73 + . . scaffold655 TRF Tandem_Repeat 263100 263894 675 + . . scaffold655 GLEAN promoter 265298 266297 1 + . ID=CGI_10014956; scaffold655 GLEAN mRNA 266298 268401 1 + . ID=CGI_10014956; scaffold655 TRF Tandem_Repeat 272712 273744 1823 + . . scaffold655 TRF Tandem_Repeat 273914 273967 67 + . . scaffold655 TRF Tandem_Repeat 273917 273962 67 + . . scaffold655 GLEAN mRNA 274961 286813 0.999825 - . ID=CGI_10014957; scaffold655 TRF Tandem_Repeat 278520 278556 67 + . . scaffold655 TRF Tandem_Repeat 285769 285802 68 + . . scaffold655 GLEAN promoter 286814 287813 0.999825 - . ID=CGI_10014957; scaffold655 GLEAN promoter 287551 288550 0.783926 + . ID=CGI_10014958; scaffold655 GLEAN mRNA 288551 322246 0.783926 + . ID=CGI_10014958; scaffold655 TRF Tandem_Repeat 289345 289377 66 + . . scaffold655 TRF Tandem_Repeat 307212 307256 90 + . . scaffold655 TRF Tandem_Repeat 308035 308148 143 + . . scaffold655 TRF Tandem_Repeat 308644 308690 69 + . . scaffold655 TRF Tandem_Repeat 308772 309151 519 + . . scaffold655 WUBlastX LINE_RTE-BovB 311920 312471 24 - . . scaffold655 WUBlastX LINE_RTE-BovB 312352 312705 60 - . . scaffold655 TRF Tandem_Repeat 315731 315773 77 + . . scaffold655 WUBlastX LINE_L2 316428 316733 62 - . . scaffold655 WUBlastX LINE_CR1-L2 316551 316769 22 - . . scaffold655 WUBlastX LINE_L2 317070 318479 427 - . . scaffold655 WUBlastX LINE_CR1 318302 318880 90 - . . scaffold655 WUBlastX LINE_L2 318302 318766 239 - . . scaffold655 WUBlastX LINE_L2 318970 319449 148 - . . scaffold655 WUBlastX LINE_L2 319454 319960 128 - . . scaffold655 WUBlastX LINE_CR1-L2 319781 320056 22 - . . scaffold655 WUBlastX LINE_CR1-L2 320876 321385 214 - . . scaffold655 WUBlastX LINE_RTE-X 323223 323477 68 - . . scaffold655 WUBlastX LINE_RTE-X 323304 323477 71 - . . scaffold655 WUBlastX LINE_RTE-X 323319 323621 70 - . . scaffold655 WUBlastX LTR_Gypsy 323987 324160 87 - . . scaffold655 WUBlastX LTR_Gypsy-Cigr 324038 324148 106 - . . scaffold655 WUBlastX LTR_Gypsy-Cigr 324148 325017 668 - . . scaffold655 WUBlastX LTR_Gypsy 325008 325052 21 - . . scaffold655 WUBlastX LTR_Gypsy 325124 325357 37 - . . scaffold655 WUBlastX LTR_Gypsy 325151 325276 39 - . . scaffold655 WUBlastX LINE_RTE-X 325363 325575 111 - . . scaffold655 GLEAN promoter 329700 330699 0.994137 + . ID=CGI_10014959; scaffold655 GLEAN mRNA 330700 332194 0.994137 + . ID=CGI_10014959; scaffold655 GLEAN promoter 335510 336509 0.992485 + . ID=CGI_10014960; scaffold655 GLEAN mRNA 336510 357944 0.992485 + . ID=CGI_10014960; scaffold655 TRF Tandem_Repeat 342222 342266 54 + . . scaffold655 TRF Tandem_Repeat 342224 342260 65 + . . scaffold655 TRF Tandem_Repeat 343740 343785 83 + . . scaffold655 TRF Tandem_Repeat 346555 346824 454 + . . scaffold655 TRF Tandem_Repeat 347938 349057 1357 + . . scaffold655 TRF Tandem_Repeat 349228 349273 74 + . . scaffold655 GLEAN promoter 362115 363114 0.997997 + . ID=CGI_10014961; scaffold655 GLEAN mRNA 363115 399105 0.997997 + . ID=CGI_10014961; scaffold655 TRF Tandem_Repeat 374190 374230 82 + . . scaffold655 GLEAN promoter 400856 401855 0.969452 + . ID=CGI_10014962; scaffold655 GLEAN mRNA 401856 402800 0.969452 + . ID=CGI_10014962; scaffold655 WUBlastX LTR_Gypsy 409987 410994 637 - . . scaffold655 GLEAN mRNA 410008 410964 0.999999 - . ID=CGI_10014963; scaffold655 GLEAN promoter 410965 411964 0.999999 - . ID=CGI_10014963; scaffold655 TRF Tandem_Repeat 411920 411977 57 + . . scaffold655 GLEAN promoter 415973 416972 0.801517 + . ID=CGI_10014964; scaffold655 GLEAN mRNA 416973 417542 0.801517 + . ID=CGI_10014964; scaffold658 TRF Tandem_Repeat 2678 2776 90 + . . scaffold658 TRF Tandem_Repeat 25938 25999 72 + . . scaffold658 GLEAN mRNA 27632 29659 0.992433 - . ID=CGI_10018961; scaffold658 GLEAN promoter 29660 30659 0.992433 - . ID=CGI_10018961; scaffold658 GLEAN promoter 30391 31390 0.343104 + . ID=CGI_10018962; scaffold658 GLEAN mRNA 31391 35963 0.343104 + . ID=CGI_10018962; scaffold658 TRF Tandem_Repeat 33372 34204 1108 + . . scaffold658 TRF Tandem_Repeat 59470 59647 80 + . . scaffold658 TRF Tandem_Repeat 60694 60730 74 + . . scaffold658 TRF Tandem_Repeat 60846 60895 100 + . . scaffold658 TRF Tandem_Repeat 61081 61106 52 + . . scaffold658 TRF Tandem_Repeat 61271 61312 57 + . . scaffold658 TRF Tandem_Repeat 63327 63504 80 + . . scaffold658 TRF Tandem_Repeat 63643 63672 60 + . . scaffold658 TRF Tandem_Repeat 64227 64393 226 + . . scaffold658 TRF Tandem_Repeat 64236 64384 172 + . . scaffold658 GLEAN mRNA 95616 97154 0.73801 - . ID=CGI_10018963; scaffold658 GLEAN promoter 97155 98154 0.73801 - . ID=CGI_10018963; scaffold658 GLEAN mRNA 98902 126256 0.997281 - . ID=CGI_10018964; scaffold658 TRF Tandem_Repeat 99368 99395 56 + . . scaffold658 WUBlastX DNA_TcMar-Tc2 106059 107309 1014 + . . scaffold658 TRF Tandem_Repeat 123455 124256 913 + . . scaffold658 GLEAN promoter 126257 127256 0.997281 - . ID=CGI_10018964; scaffold658 TRF Tandem_Repeat 126434 126516 94 + . . scaffold658 TRF Tandem_Repeat 127402 127474 67 + . . scaffold658 GLEAN mRNA 130483 133264 1 - . ID=CGI_10018965; scaffold658 GLEAN promoter 133265 134264 1 - . ID=CGI_10018965; scaffold658 GLEAN mRNA 134732 149069 0.988841 - . ID=CGI_10018966; scaffold658 TRF Tandem_Repeat 140559 140598 62 + . . scaffold658 GLEAN promoter 149070 150069 0.988841 - . ID=CGI_10018966; scaffold658 WUBlastX LINE_RTE-X 151786 152133 71 - . . scaffold658 WUBlastX LINE_RTE-X 151852 152067 92 - . . scaffold658 WUBlastX LINE_RTE-X 151888 152133 102 - . . scaffold658 WUBlastX LINE_RTE-X 151894 152067 120 - . . scaffold658 WUBlastX DNA_En-Spm 166097 166546 161 + . . scaffold658 WUBlastX DNA_En-Spm 166205 166543 190 + . . scaffold658 WUBlastX DNA_En-Spm 166470 168389 1067 + . . scaffold658 TRF Tandem_Repeat 168484 168742 349 + . . scaffold658 GLEAN mRNA 169908 179318 0.356987 - . ID=CGI_10018967; scaffold658 TRF Tandem_Repeat 171605 171677 130 + . . scaffold658 TRF Tandem_Repeat 171675 171713 78 + . . scaffold658 GLEAN promoter 179319 180318 0.356987 - . ID=CGI_10018967; scaffold658 TRF Tandem_Repeat 206273 206369 194 + . . scaffold658 TRF Tandem_Repeat 212440 212488 53 + . . scaffold658 TRF Tandem_Repeat 212870 212936 116 + . . scaffold658 TRF Tandem_Repeat 215264 215436 292 + . . scaffold658 TRF Tandem_Repeat 216977 217166 299 + . . scaffold658 WUBlastX LINE_L1-Tx1 223684 225504 521 - . . scaffold658 WUBlastX LINE_L1 225503 226126 272 - . . scaffold658 WUBlastX LINE_L1-Tx1 225503 225997 368 - . . scaffold658 WUBlastX LINE_L1-Tx1 225512 226408 198 - . . scaffold658 TRF Tandem_Repeat 227110 227155 92 + . . scaffold658 TRF Tandem_Repeat 227303 227396 179 + . . scaffold658 GLEAN promoter 227316 228315 0.37443 + . ID=CGI_10018968; scaffold658 GLEAN mRNA 228316 233174 0.37443 + . ID=CGI_10018968; scaffold658 WUBlastX LINE_RTE-BovB 232459 232632 181 - . . scaffold658 WUBlastX LINE_RTE-BovB 232486 232662 76 - . . scaffold658 TRF Tandem_Repeat 243560 243622 117 + . . scaffold658 TRF Tandem_Repeat 244247 244335 178 + . . scaffold658 TRF Tandem_Repeat 251432 251511 75 + . . scaffold658 TRF Tandem_Repeat 251445 251514 70 + . . scaffold658 TRF Tandem_Repeat 251447 251516 51 + . . scaffold658 TRF Tandem_Repeat 255609 255663 56 + . . scaffold658 TRF Tandem_Repeat 255612 255667 62 + . . scaffold658 TRF Tandem_Repeat 268907 269001 84 + . . scaffold658 WUBlastX DNA_TcMar-Marin 278926 278982 24 - . . scaffold658 WUBlastX DNA_TcMar-Marin 279032 279148 54 - . . scaffold658 WUBlastX DNA_TcMar-Marin 279225 279386 27 - . . scaffold658 TRF Tandem_Repeat 279596 279669 148 + . . scaffold658 TRF Tandem_Repeat 297349 297383 70 + . . scaffold658 WUBlastX LINE_RTE-X 301603 302496 87 - . . scaffold658 WUBlastX LINE_RTE-X 301753 302631 102 - . . scaffold658 GLEAN promoter 305516 306515 0.512593 + . ID=CGI_10018969; scaffold658 GLEAN mRNA 306516 322076 0.512593 + . ID=CGI_10018969; scaffold658 TRF Tandem_Repeat 307483 307538 103 + . . scaffold658 TRF Tandem_Repeat 335876 335947 144 + . . scaffold658 TRF Tandem_Repeat 336034 336068 63 + . . scaffold658 TRF Tandem_Repeat 336161 336235 125 + . . scaffold658 TRF Tandem_Repeat 337511 337541 53 + . . scaffold658 TRF Tandem_Repeat 347160 347216 78 + . . scaffold658 TRF Tandem_Repeat 351170 351228 55 + . . scaffold658 TRF Tandem_Repeat 352171 352196 52 + . . scaffold658 TRF Tandem_Repeat 365131 365173 86 + . . scaffold658 TRF Tandem_Repeat 366536 366586 102 + . . scaffold658 TRF Tandem_Repeat 366679 366754 136 + . . scaffold658 TRF Tandem_Repeat 367262 367302 82 + . . scaffold658 TRF Tandem_Repeat 367650 367684 70 + . . scaffold658 GLEAN promoter 372204 373203 0.999998 + . ID=CGI_10018970; scaffold658 GLEAN mRNA 373204 374415 0.999998 + . ID=CGI_10018970; scaffold658 TRF Tandem_Repeat 377065 377121 114 + . . scaffold658 GLEAN mRNA 385104 386990 0.999661 - . ID=CGI_10018971; scaffold658 GLEAN promoter 386991 387990 0.999661 - . ID=CGI_10018971; scaffold658 WUBlastX LINE_L2 387290 387553 83 - . . scaffold658 WUBlastX LINE_L2 387556 388242 401 - . . scaffold658 WUBlastX LINE_CR1-L2 387631 388392 259 - . . scaffold658 WUBlastX LINE_L2 388266 388556 194 - . . scaffold658 WUBlastX LINE_L2 388556 389056 333 - . . scaffold658 WUBlastX LINE_CR1-L2 388568 389188 210 - . . scaffold658 WUBlastX LINE_L2 389049 389657 186 - . . scaffold658 WUBlastX LINE_L2 389605 390225 156 - . . scaffold658 WUBlastX LINE_L2 390203 390334 56 - . . scaffold658 WUBlastX LINE_L2 390221 390433 51 - . . scaffold658 TRF Tandem_Repeat 394094 394148 94 + . . scaffold658 GLEAN promoter 398105 399104 0.553324 + . ID=CGI_10018972; scaffold658 GLEAN mRNA 399105 407416 0.553324 + . ID=CGI_10018972; scaffold658 TRF Tandem_Repeat 405602 405849 55 + . . scaffold658 TRF Tandem_Repeat 410038 410392 310 + . . scaffold658 GLEAN mRNA 415783 417282 0.589513 - . ID=CGI_10018973; scaffold658 GLEAN promoter 417283 418282 0.589513 - . ID=CGI_10018973; scaffold658 WUBlastX DNA_MuDR 428538 428876 49 + . . scaffold658 WUBlastX DNA_MuDR 428553 428810 88 + . . scaffold658 WUBlastX DNA_MuDR 428990 429241 50 + . . scaffold658 WUBlastX DNA_MuDR 429032 429280 48 + . . scaffold658 GLEAN promoter 429361 430360 0.999982 + . ID=CGI_10018974; scaffold658 GLEAN mRNA 430361 431860 0.999982 + . ID=CGI_10018974; scaffold658 TRF Tandem_Repeat 433035 433122 74 + . . scaffold658 TRF Tandem_Repeat 433358 433391 68 + . . scaffold658 WUBlastX LINE_RTE-X 436420 436650 20 - . . scaffold658 WUBlastX LINE_RTE-X 436458 437708 404 - . . scaffold658 WUBlastX LINE_RTE-X 436668 437714 570 - . . scaffold658 WUBlastX LINE_RTE-X 437680 438354 491 - . . scaffold658 WUBlastX LINE_RTE-X 438366 439646 550 - . . scaffold658 WUBlastX LINE_RTE-X 439670 439912 117 - . . scaffold658 GLEAN mRNA 439916 440515 1 - . ID=CGI_10018975; scaffold658 WUBlastX LINE_RTE-X 439955 440599 208 - . . scaffold658 GLEAN promoter 440516 441515 1 - . ID=CGI_10018975; scaffold658 GLEAN promoter 440632 441631 0.996749 + . ID=CGI_10018976; scaffold658 GLEAN mRNA 441632 442336 0.996749 + . ID=CGI_10018976; scaffold658 WUBlastX DNA_Sola 449932 450210 77 - . . scaffold658 WUBlastX DNA_Sola 450004 450231 90 - . . scaffold658 WUBlastX DNA_Sola 450638 450760 36 - . . scaffold658 WUBlastX DNA_Sola 450757 450993 78 - . . scaffold658 WUBlastX DNA_Sola 450757 451200 46 - . . scaffold658 TRF Tandem_Repeat 457059 457110 104 + . . scaffold658 TRF Tandem_Repeat 488168 488215 50 + . . scaffold658 TRF Tandem_Repeat 488168 488215 62 + . . scaffold658 TRF Tandem_Repeat 508824 508889 132 + . . scaffold658 GLEAN promoter 510399 511398 0.692133 + . ID=CGI_10018978; scaffold658 GLEAN mRNA 511180 535003 0.482726 - . ID=CGI_10018977; scaffold658 GLEAN mRNA 511399 534744 0.692133 + . ID=CGI_10018978; scaffold658 GLEAN promoter 535004 536003 0.482726 - . ID=CGI_10018977; scaffold658 TRF Tandem_Repeat 541861 542100 462 + . . scaffold658 GLEAN promoter 560033 561032 0.579463 + . ID=CGI_10018979; scaffold658 GLEAN mRNA 561033 562163 0.579463 + . ID=CGI_10018979; scaffold658 TRF Tandem_Repeat 569432 569457 52 + . . scaffold658 TRF Tandem_Repeat 572485 572538 108 + . . scaffold658 TRF Tandem_Repeat 573239 573341 66 + . . scaffold658 GLEAN mRNA 573637 575746 1 - . ID=CGI_10018980; scaffold658 GLEAN promoter 575747 576272 1 - . ID=CGI_10018980; scaffold659 GLEAN promoter 1 28 0.692942 + . ID=CGI_10014692; scaffold659 GLEAN mRNA 29 26278 0.692942 + . ID=CGI_10014692; scaffold659 TRF Tandem_Repeat 6563 6595 57 + . . scaffold659 TRF Tandem_Repeat 8275 8313 78 + . . scaffold659 TRF Tandem_Repeat 9704 9738 56 + . . scaffold659 TRF Tandem_Repeat 9705 9747 50 + . . scaffold659 WUBlastX DNA_P 11285 11830 29 + . . scaffold659 WUBlastX DNA_P 11285 11635 65 + . . scaffold659 WUBlastX DNA_IS4EU 11805 12482 296 + . . scaffold659 WUBlastX DNA_IS4EU 12473 12715 148 + . . scaffold659 WUBlastX DNA_IS4EU 14258 14575 77 - . . scaffold659 TRF Tandem_Repeat 28075 28125 57 + . . scaffold659 TRF Tandem_Repeat 28307 29632 1536 + . . scaffold659 TRF Tandem_Repeat 63634 63679 74 + . . scaffold659 WUBlastX DNA_TcMar-Tc1 66831 67187 176 - . . scaffold659 WUBlastX DNA_TcMar-Tc1 67171 67371 78 - . . scaffold659 WUBlastX DNA_TcMar-Tc1 67319 67861 124 - . . scaffold659 GLEAN promoter 68670 69669 0.417222 + . ID=CGI_10014693; scaffold659 GLEAN mRNA 69670 71577 0.417222 + . ID=CGI_10014693; scaffold659 TRF Tandem_Repeat 78820 78851 55 + . . scaffold659 TRF Tandem_Repeat 81553 81602 64 + . . scaffold659 TRF Tandem_Repeat 81553 81610 91 + . . scaffold659 TRF Tandem_Repeat 81556 81609 56 + . . scaffold659 WUBlastX DNA_Maverick 84508 84996 300 - . . scaffold659 WUBlastX DNA_Maverick 85618 85863 156 - . . scaffold659 WUBlastX DNA_Maverick 85618 85917 109 - . . scaffold659 WUBlastX DNA_Maverick 85779 86126 89 - . . scaffold659 WUBlastX DNA_Maverick 85988 86176 39 - . . scaffold659 TRF Tandem_Repeat 91667 91788 113 + . . scaffold659 GLEAN mRNA 92752 93126 0.866674 - . ID=CGI_10014694; scaffold659 WUBlastX DNA_MuDR 92785 93144 61 - . . scaffold659 GLEAN promoter 93127 94126 0.866674 - . ID=CGI_10014694; scaffold659 TRF Tandem_Repeat 95634 95686 88 + . . scaffold659 TRF Tandem_Repeat 99682 99745 128 + . . scaffold659 WUBlastX LINE_L1-Tx1 99875 100777 179 - . . scaffold659 TRF Tandem_Repeat 101179 101225 94 + . . scaffold659 GLEAN promoter 102113 103112 1 + . ID=CGI_10014695; scaffold659 GLEAN mRNA 103113 103265 1 + . ID=CGI_10014695; scaffold659 TRF Tandem_Repeat 103713 103784 81 + . . scaffold659 GLEAN promoter 104125 105124 0.844003 + . ID=CGI_10014696; scaffold659 GLEAN mRNA 105125 112926 0.844003 + . ID=CGI_10014696; scaffold659 TRF Tandem_Repeat 116285 116364 160 + . . scaffold659 GLEAN promoter 116536 117535 0.999999 + . ID=CGI_10014697; scaffold659 GLEAN mRNA 117536 118204 0.999999 + . ID=CGI_10014697; scaffold659 GLEAN promoter 126913 127912 1 + . ID=CGI_10014698; scaffold659 GLEAN mRNA 127913 128464 1 + . ID=CGI_10014698; scaffold659 GLEAN promoter 129837 130836 0.543242 + . ID=CGI_10014699; scaffold659 GLEAN mRNA 130837 136692 0.543242 + . ID=CGI_10014699; scaffold659 GLEAN mRNA 137196 142040 0.999508 - . ID=CGI_10014700; scaffold659 TRF Tandem_Repeat 140565 140615 102 + . . scaffold659 GLEAN promoter 142041 143040 0.999508 - . ID=CGI_10014700; scaffold659 GLEAN mRNA 144105 148758 1 - . ID=CGI_10014701; scaffold659 GLEAN promoter 148759 149758 1 - . ID=CGI_10014701; scaffold659 TRF Tandem_Repeat 153365 153409 90 + . . scaffold659 GLEAN mRNA 154499 163825 0.873524 - . ID=CGI_10014702; scaffold659 TRF Tandem_Repeat 157184 158695 2098 + . . scaffold659 TRF Tandem_Repeat 158865 158930 71 + . . scaffold659 TRF Tandem_Repeat 160993 162027 1145 + . . scaffold659 TRF Tandem_Repeat 160993 162027 1196 + . . scaffold659 GLEAN promoter 163058 164057 1 + . ID=CGI_10014703; scaffold659 GLEAN promoter 163826 164825 0.873524 - . ID=CGI_10014702; scaffold659 GLEAN mRNA 164058 164285 1 + . ID=CGI_10014703; scaffold659 GLEAN mRNA 165156 183781 0.998957 - . ID=CGI_10014704; scaffold659 GLEAN promoter 183782 184781 0.998957 - . ID=CGI_10014704; scaffold659 GLEAN promoter 208253 209252 0.840107 + . ID=CGI_10014705; scaffold659 GLEAN mRNA 209253 232047 0.840107 + . ID=CGI_10014705; scaffold659 TRF Tandem_Repeat 212791 212859 138 + . . scaffold659 TRF Tandem_Repeat 218918 218961 88 + . . scaffold659 TRF Tandem_Repeat 237908 237944 74 + . . scaffold659 GLEAN mRNA 256427 273150 0.999949 - . ID=CGI_10014707; scaffold659 GLEAN promoter 273151 274150 0.999949 - . ID=CGI_10014707; scaffold659 GLEAN mRNA 274030 280140 0.997519 - . ID=CGI_10014708; scaffold659 TRF Tandem_Repeat 279760 279804 90 + . . scaffold659 GLEAN promoter 280141 281140 0.997519 - . ID=CGI_10014708; scaffold659 GLEAN mRNA 294225 308392 0.999949 - . ID=CGI_10014709; scaffold659 GLEAN promoter 308393 309392 0.999949 - . ID=CGI_10014709; scaffold659 GLEAN promoter 309162 310161 0.981532 + . ID=CGI_10014710; scaffold659 GLEAN mRNA 310162 314652 0.981532 + . ID=CGI_10014710; scaffold659 GLEAN mRNA 318894 331200 1 - . ID=CGI_10014711; scaffold659 GLEAN promoter 331201 332200 1 - . ID=CGI_10014711; scaffold659 GLEAN mRNA 332425 351429 0.997886 - . ID=CGI_10014712; scaffold659 GLEAN promoter 349486 350485 0.544755 + . ID=CGI_10014713; scaffold659 GLEAN mRNA 350486 357246 0.544755 + . ID=CGI_10014713; scaffold659 GLEAN promoter 351430 352429 0.997886 - . ID=CGI_10014712; scaffold659 TRF Tandem_Repeat 358243 358270 56 + . . scaffold659 GLEAN mRNA 358784 361646 1 - . ID=CGI_10014714; scaffold659 GLEAN promoter 361647 362646 1 - . ID=CGI_10014714; scaffold659 WUBlastX LINE_CR1 362519 362716 54 + . . scaffold659 WUBlastX LINE_L2 362603 362845 57 + . . scaffold659 WUBlastX LINE_L2 362603 362725 71 + . . scaffold659 GLEAN promoter 366494 367493 1 + . ID=CGI_10014715; scaffold659 GLEAN mRNA 367494 380695 1 + . ID=CGI_10014715; scaffold659 TRF Tandem_Repeat 369360 369648 485 + . . scaffold659 TRF Tandem_Repeat 375443 375481 78 + . . scaffold659 WUBlastX LINE_RTE-X 381582 381947 34 - . . scaffold659 WUBlastX LTR_DIRS? 385186 385395 151 + . . scaffold659 WUBlastX LTR_DIRS 388022 388849 137 + . . scaffold659 WUBlastX LTR_DIRS 388589 388927 49 + . . scaffold659 WUBlastX LTR_DIRS 388853 388987 23 + . . scaffold659 WUBlastX LTR_DIRS 388969 389232 39 + . . scaffold659 WUBlastX LTR_DIRS 388969 389151 50 + . . scaffold659 WUBlastX LTR_DIRS 389345 389611 60 + . . scaffold659 WUBlastX LTR_DIRS 389626 390264 142 + . . scaffold659 WUBlastX LTR_DIRS? 389692 390219 182 + . . scaffold659 TRF Tandem_Repeat 396895 396988 136 + . . scaffold659 TRF Tandem_Repeat 403226 403277 104 + . . scaffold659 GLEAN mRNA 404572 405855 0.99862 - . ID=CGI_10014716; scaffold659 GLEAN promoter 405856 406855 0.99862 - . ID=CGI_10014716; scaffold66 TRF Tandem_Repeat 8 69 108 + . . scaffold66 TRF Tandem_Repeat 779 805 54 + . . scaffold66 WUBlastX LINE_RTE-BovB 8480 8617 49 + . . scaffold66 WUBlastX LINE_RTE-BovB 8504 9022 129 + . . scaffold66 WUBlastX LINE_RTE-BovB 9012 9212 136 + . . scaffold66 TRF Tandem_Repeat 11110 11150 55 + . . scaffold66 TRF Tandem_Repeat 11841 11908 136 + . . scaffold66 GLEAN mRNA 12411 19378 0.979626 - . ID=CGI_10006190; scaffold66 TRF Tandem_Repeat 14137 14170 50 + . . scaffold66 TRF Tandem_Repeat 14861 14944 107 + . . scaffold66 TRF Tandem_Repeat 16330 16361 64 + . . scaffold66 TRF Tandem_Repeat 17613 17647 70 + . . scaffold66 GLEAN promoter 19379 20378 0.979626 - . ID=CGI_10006190; scaffold66 TRF Tandem_Repeat 25234 25276 86 + . . scaffold66 TRF Tandem_Repeat 47314 47347 68 + . . scaffold66 TRF Tandem_Repeat 47992 49507 1926 + . . scaffold66 TRF Tandem_Repeat 58036 58121 172 + . . scaffold66 TRF Tandem_Repeat 64517 64554 67 + . . scaffold66 GLEAN mRNA 71135 76044 0.937633 - . ID=CGI_10006191; scaffold66 GLEAN promoter 76045 77044 0.937633 - . ID=CGI_10006191; scaffold66 WUBlastX LINE_RTE-BovB 83585 83809 55 + . . scaffold66 GLEAN promoter 104673 105672 0.445669 + . ID=CGI_10006192; scaffold66 GLEAN mRNA 105673 117401 0.445669 + . ID=CGI_10006192; scaffold66 WUBlastX DNA_IS4EU 112338 112442 48 + . . scaffold66 WUBlastX DNA_IS4EU 112472 112600 27 + . . scaffold66 GLEAN mRNA 113582 124260 0.991828 - . ID=CGI_10006193; scaffold66 TRF Tandem_Repeat 114281 114337 51 + . . scaffold66 TRF Tandem_Repeat 118819 118864 92 + . . scaffold66 GLEAN promoter 124261 125260 0.991828 - . ID=CGI_10006193; scaffold66 TRF Tandem_Repeat 141278 142251 684 + . . scaffold66 TRF Tandem_Repeat 141287 142257 484 + . . scaffold66 TRF Tandem_Repeat 146953 146989 74 + . . scaffold660 GLEAN promoter 5406 6405 0.984536 + . ID=CGI_10013747; scaffold660 GLEAN mRNA 6406 33630 0.984536 + . ID=CGI_10013747; scaffold660 TRF Tandem_Repeat 7228 7498 373 + . . scaffold660 TRF Tandem_Repeat 7871 9124 1562 + . . scaffold660 TRF Tandem_Repeat 11813 12652 567 + . . scaffold660 TRF Tandem_Repeat 11879 12651 1060 + . . scaffold660 TRF Tandem_Repeat 19663 19936 395 + . . scaffold660 TRF Tandem_Repeat 20827 20944 122 + . . scaffold660 TRF Tandem_Repeat 30733 30984 362 + . . scaffold660 TRF Tandem_Repeat 31041 31163 120 + . . scaffold660 TRF Tandem_Repeat 31051 31184 114 + . . scaffold660 GLEAN mRNA 36878 91372 0.840094 - . ID=CGI_10013748; scaffold660 TRF Tandem_Repeat 51318 52741 1571 + . . scaffold660 TRF Tandem_Repeat 51318 52741 1647 + . . scaffold660 TRF Tandem_Repeat 54530 55483 1289 + . . scaffold660 TRF Tandem_Repeat 55514 55541 56 + . . scaffold660 TRF Tandem_Repeat 88074 88133 111 + . . scaffold660 GLEAN promoter 91373 92372 0.840094 - . ID=CGI_10013748; scaffold660 TRF Tandem_Repeat 93245 93276 64 + . . scaffold660 TRF Tandem_Repeat 93810 93837 56 + . . scaffold660 GLEAN mRNA 94998 98466 0.989219 - . ID=CGI_10013749; scaffold660 GLEAN promoter 98467 99466 0.989219 - . ID=CGI_10013749; scaffold660 GLEAN mRNA 98549 108257 0.999675 - . ID=CGI_10013750; scaffold660 WUBlastX LINE_L1-Tx1 98868 99278 108 - . . scaffold660 WUBlastX LINE_L1-Tx1 98898 99359 81 - . . scaffold660 WUBlastX LINE_RTE-X 106971 107150 24 + . . scaffold660 WUBlastX LINE_RTE-X 106995 107117 41 + . . scaffold660 WUBlastX LINE_RTE-X 107232 107825 30 + . . scaffold660 WUBlastX LINE_RTE-X 107646 107798 66 + . . scaffold660 WUBlastX LINE_RTE-X 107646 107834 51 + . . scaffold660 GLEAN promoter 108258 109257 0.999675 - . ID=CGI_10013750; scaffold660 TRF Tandem_Repeat 117388 117454 116 + . . scaffold660 TRF Tandem_Repeat 122665 122738 148 + . . scaffold660 TRF Tandem_Repeat 122950 122978 58 + . . scaffold660 TRF Tandem_Repeat 125428 125494 125 + . . scaffold660 WUBlastX LINE_L1-Tx1 128452 129006 37 - . . scaffold660 WUBlastX LINE_L1 128539 129051 80 - . . scaffold660 WUBlastX LINE_L1-Tx1 128626 128997 154 - . . scaffold660 WUBlastX LINE_L1 129005 129106 70 - . . scaffold660 GLEAN mRNA 129253 184428 0.855126 - . ID=CGI_10013751; scaffold660 WUBlastX DNA_Crypton 136827 137003 76 + . . scaffold660 TRF Tandem_Repeat 137869 137905 65 + . . scaffold660 WUBlastX LINE_Penelope 144782 145180 45 + . . scaffold660 TRF Tandem_Repeat 148779 148815 74 + . . scaffold660 TRF Tandem_Repeat 154278 154324 94 + . . scaffold660 WUBlastX LINE_RTE-BovB 155829 156029 235 + . . scaffold660 WUBlastX LINE_RTE-BovB 155951 156259 240 + . . scaffold660 WUBlastX LINE_RTE-BovB 156259 156339 58 + . . scaffold660 WUBlastX LINE_RTE-BovB 156315 156758 418 + . . scaffold660 TRF Tandem_Repeat 165321 165387 89 + . . scaffold660 TRF Tandem_Repeat 172717 172767 50 + . . scaffold660 TRF Tandem_Repeat 172729 172796 57 + . . scaffold660 TRF Tandem_Repeat 181562 181595 59 + . . scaffold660 TRF Tandem_Repeat 181656 181686 62 + . . scaffold660 TRF Tandem_Repeat 181684 181741 116 + . . scaffold660 GLEAN promoter 184429 185428 0.855126 - . ID=CGI_10013751; scaffold660 GLEAN mRNA 184442 196511 0.999662 - . ID=CGI_10013752; scaffold660 GLEAN promoter 196512 197511 0.999662 - . ID=CGI_10013752; scaffold660 TRF Tandem_Repeat 199492 199525 50 + . . scaffold660 GLEAN promoter 200436 201435 0.999661 + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 200653 200952 28 + . . scaffold660 WUBlastX DNA_hAT-Tip100 200976 201092 42 + . . scaffold660 WUBlastX DNA_hAT-Tip100 201325 201957 27 + . . scaffold660 WUBlastX DNA_hAT-Tip100 201430 201957 77 + . . scaffold660 GLEAN mRNA 201436 201984 0.999661 + . ID=CGI_10013753; scaffold660 WUBlastX DNA_hAT-Tip100 201670 201957 97 + . . scaffold660 WUBlastX DNA_hAT-Tip100 201727 201969 102 + . . scaffold660 WUBlastX LINE_L2 205039 205401 52 + . . scaffold660 WUBlastX LINE_L2 205401 205481 27 + . . scaffold660 WUBlastX LINE_CR1-L2 207316 207582 35 + . . scaffold660 TRF Tandem_Repeat 211663 211729 66 + . . scaffold660 TRF Tandem_Repeat 211663 211738 68 + . . scaffold660 TRF Tandem_Repeat 211664 211738 69 + . . scaffold660 TRF Tandem_Repeat 211665 211729 53 + . . scaffold660 GLEAN promoter 211702 212701 0.996819 + . ID=CGI_10013754; scaffold660 GLEAN mRNA 212702 225018 0.996819 + . ID=CGI_10013754; scaffold660 GLEAN mRNA 225481 236220 0.997925 - . ID=CGI_10013755; scaffold660 GLEAN promoter 236221 237220 0.997925 - . ID=CGI_10013755; scaffold660 GLEAN mRNA 238514 240704 1 - . ID=CGI_10013756; scaffold660 GLEAN promoter 240705 241704 1 - . ID=CGI_10013756; scaffold660 WUBlastX LINE_Penelope 247713 249629 758 + . . scaffold660 TRF Tandem_Repeat 260631 260662 50 + . . scaffold660 TRF Tandem_Repeat 260632 260672 55 + . . scaffold660 TRF Tandem_Repeat 261303 261339 74 + . . scaffold660 GLEAN mRNA 262918 272091 0.750852 - . ID=CGI_10013757; scaffold660 TRF Tandem_Repeat 264970 265389 283 + . . scaffold660 TRF Tandem_Repeat 266036 266062 54 + . . scaffold660 GLEAN promoter 272092 273091 0.750852 - . ID=CGI_10013757; scaffold660 TRF Tandem_Repeat 272752 272940 360 + . . scaffold660 TRF Tandem_Repeat 273813 273880 136 + . . scaffold660 TRF Tandem_Repeat 274269 274334 132 + . . scaffold660 TRF Tandem_Repeat 281686 281724 71 + . . scaffold660 TRF Tandem_Repeat 285818 285870 99 + . . scaffold660 TRF Tandem_Repeat 286295 286325 62 + . . scaffold660 TRF Tandem_Repeat 298617 298652 56 + . . scaffold660 TRF Tandem_Repeat 302615 302690 152 + . . scaffold660 TRF Tandem_Repeat 303617 303655 78 + . . scaffold660 TRF Tandem_Repeat 304304 304621 420 + . . scaffold660 TRF Tandem_Repeat 304540 304625 64 + . . scaffold660 TRF Tandem_Repeat 309137 309165 58 + . . scaffold660 TRF Tandem_Repeat 309218 309264 94 + . . scaffold660 GLEAN promoter 316528 317527 1 + . ID=CGI_10013758; scaffold660 GLEAN mRNA 317528 322238 1 + . ID=CGI_10013758; scaffold660 TRF Tandem_Repeat 317794 317846 106 + . . scaffold660 TRF Tandem_Repeat 324406 324463 116 + . . scaffold660 GLEAN mRNA 327110 328273 0.941879 - . ID=CGI_10013759; scaffold660 GLEAN promoter 328274 329273 0.941879 - . ID=CGI_10013759; scaffold660 WUBlastX LINE_RTE-X 337797 337982 107 + . . scaffold660 GLEAN promoter 339117 340116 0.481188 + . ID=CGI_10013760; scaffold660 GLEAN mRNA 340117 340320 0.481188 + . ID=CGI_10013760; scaffold660 GLEAN mRNA 344293 349155 1 - . ID=CGI_10013761; scaffold660 TRF Tandem_Repeat 344881 344915 63 + . . scaffold660 TRF Tandem_Repeat 346967 347293 501 + . . scaffold660 GLEAN promoter 349156 350155 1 - . ID=CGI_10013761; scaffold660 TRF Tandem_Repeat 365241 365313 70 + . . scaffold660 TRF Tandem_Repeat 366347 366382 72 + . . scaffold660 TRF Tandem_Repeat 366431 366468 76 + . . scaffold661 TRF Tandem_Repeat 2738 2783 60 + . . scaffold661 TRF Tandem_Repeat 5733 5779 94 + . . scaffold661 TRF Tandem_Repeat 5813 5841 58 + . . scaffold661 GLEAN promoter 6045 7044 0.999828 + . ID=CGI_10001831; scaffold661 GLEAN mRNA 7045 16224 0.999828 + . ID=CGI_10001831; scaffold661 GLEAN mRNA 18019 20521 1 - . ID=CGI_10001832; scaffold661 GLEAN promoter 20522 21521 1 - . ID=CGI_10001832; scaffold661 GLEAN mRNA 29358 29585 1 - . ID=CGI_10001833; scaffold661 GLEAN promoter 29586 30585 1 - . ID=CGI_10001833; scaffold661 WUBlastX LINE_CR1 29639 29728 28 + . . scaffold661 WUBlastX LINE_L1 29645 29713 28 + . . scaffold661 WUBlastX LINE_L1-Tx1 29794 30768 186 + . . scaffold661 WUBlastX LINE_L1 30612 31331 422 + . . scaffold661 WUBlastX LINE_L1-Tx1 30618 31772 365 + . . scaffold661 WUBlastX LINE_Dong-R4 31736 31861 20 + . . scaffold663 TRF Tandem_Repeat 1299 2070 1112 + . . scaffold663 GLEAN promoter 6857 7856 0.866854 + . ID=CGI_10005257; scaffold663 GLEAN mRNA 7857 16252 0.866854 + . ID=CGI_10005257; scaffold663 WUBlastX LINE_RTE-BovB 21485 21727 61 + . . scaffold663 WUBlastX LINE_RTE-BovB 21518 21709 69 + . . scaffold663 GLEAN mRNA 22725 25367 1 - . ID=CGI_10005258; scaffold663 GLEAN promoter 24135 25134 0.673929 + . ID=CGI_10005259; scaffold663 GLEAN mRNA 25135 25392 0.673929 + . ID=CGI_10005259; scaffold663 GLEAN promoter 25368 26367 1 - . ID=CGI_10005258; scaffold663 GLEAN promoter 29248 30247 1 + . ID=CGI_10005260; scaffold663 GLEAN mRNA 30248 30991 1 + . ID=CGI_10005260; scaffold663 WUBlastX LINE_CR1-L2 32763 32852 55 + . . scaffold663 WUBlastX LINE_CR1-L2 32875 33060 24 + . . scaffold663 WUBlastX LINE_CR1-L2 32890 33045 32 + . . scaffold663 GLEAN promoter 55430 56429 0.995553 + . ID=CGI_10005261; scaffold663 GLEAN mRNA 56430 78692 0.995553 + . ID=CGI_10005261; scaffold663 GLEAN mRNA 80356 81946 1 - . ID=CGI_10005262; scaffold663 GLEAN promoter 81947 82946 1 - . ID=CGI_10005262; scaffold663 TRF Tandem_Repeat 82252 82300 98 + . . scaffold663 TRF Tandem_Repeat 83086 83125 62 + . . scaffold663 TRF Tandem_Repeat 83087 83138 68 + . . scaffold663 WUBlastX LINE_RTE-BovB 87138 87305 26 - . . scaffold663 WUBlastX LINE_L2 87168 87794 41 - . . scaffold663 WUBlastX LINE_L2 87297 87794 58 - . . scaffold663 WUBlastX LINE_RTE-X 87432 87794 69 - . . scaffold663 WUBlastX LINE_RTE-BovB 87507 87797 87 - . . scaffold663 WUBlastX LINE_RTE-X 87671 88210 171 - . . scaffold663 WUBlastX LINE_RTE-X 87764 88210 176 - . . scaffold663 WUBlastX LINE_RTE-X 87836 88210 230 - . . scaffold663 WUBlastX LINE_L2 87857 88276 113 - . . scaffold663 WUBlastX LINE_L1-Tx1 87917 88357 51 - . . scaffold663 GLEAN mRNA 89302 89760 0.546419 - . ID=CGI_10005263; scaffold663 GLEAN promoter 89761 90760 0.546419 - . ID=CGI_10005263; scaffold663 GLEAN mRNA 100296 104456 0.999692 - . ID=CGI_10005264; scaffold663 WUBlastX LTR_Gypsy 100758 104693 2986 - . . scaffold663 GLEAN promoter 104457 105456 0.999692 - . ID=CGI_10005264; scaffold663 TRF Tandem_Repeat 110055 110094 80 + . . scaffold663 GLEAN promoter 111609 112608 0.999993 + . ID=CGI_10005265; scaffold663 GLEAN mRNA 112609 119255 0.999993 + . ID=CGI_10005265; scaffold663 TRF Tandem_Repeat 118432 118490 59 + . . scaffold663 TRF Tandem_Repeat 118812 118871 84 + . . scaffold663 TRF Tandem_Repeat 118813 118859 58 + . . scaffold663 TRF Tandem_Repeat 118821 118872 50 + . . scaffold663 WUBlastX LINE_RTE-X 119232 119402 32 - . . scaffold663 WUBlastX LINE_RTE-X 119292 119465 34 - . . scaffold664 GLEAN promoter 4785 5784 0.999993 + . ID=CGI_10021433; scaffold664 GLEAN mRNA 5785 15238 0.999993 + . ID=CGI_10021433; scaffold664 TRF Tandem_Repeat 10712 10749 58 + . . scaffold664 TRF Tandem_Repeat 20980 21847 1255 + . . scaffold664 TRF Tandem_Repeat 24083 24147 116 + . . scaffold664 WUBlastX LINE_RTE-X 24952 25665 202 + . . scaffold664 WUBlastX LTR_DIRS 46962 48224 443 - . . scaffold664 TRF Tandem_Repeat 49488 49525 76 + . . scaffold664 GLEAN promoter 54169 55168 0.572692 + . ID=CGI_10021434; scaffold664 GLEAN mRNA 55169 56854 0.572692 + . ID=CGI_10021434; scaffold664 TRF Tandem_Repeat 56849 57072 285 + . . scaffold664 TRF Tandem_Repeat 56849 57072 326 + . . scaffold664 TRF Tandem_Repeat 59975 60006 64 + . . scaffold664 GLEAN promoter 60122 61121 0.392511 + . ID=CGI_10021435; scaffold664 GLEAN mRNA 61122 106734 0.392511 + . ID=CGI_10021435; scaffold664 TRF Tandem_Repeat 72888 72916 58 + . . scaffold664 TRF Tandem_Repeat 74759 74816 62 + . . scaffold664 TRF Tandem_Repeat 94160 94480 132 + . . scaffold664 TRF Tandem_Repeat 94162 94296 115 + . . scaffold664 TRF Tandem_Repeat 94177 94292 87 + . . scaffold664 TRF Tandem_Repeat 94270 94470 179 + . . scaffold664 TRF Tandem_Repeat 94378 94468 73 + . . scaffold664 TRF Tandem_Repeat 94614 94791 286 + . . scaffold664 TRF Tandem_Repeat 94924 95206 566 + . . scaffold664 TRF Tandem_Repeat 96962 97083 158 + . . scaffold664 TRF Tandem_Repeat 99010 99182 175 + . . scaffold664 TRF Tandem_Repeat 102372 102459 90 + . . scaffold664 TRF Tandem_Repeat 103527 104189 684 + . . scaffold664 TRF Tandem_Repeat 103527 104186 697 + . . scaffold664 TRF Tandem_Repeat 103528 104189 821 + . . scaffold664 TRF Tandem_Repeat 105589 105700 79 + . . scaffold664 TRF Tandem_Repeat 109020 109296 495 + . . scaffold664 GLEAN mRNA 110612 119963 0.84608 - . ID=CGI_10021436; scaffold664 TRF Tandem_Repeat 114460 114500 64 + . . scaffold664 GLEAN promoter 119964 120963 0.84608 - . ID=CGI_10021436; scaffold664 TRF Tandem_Repeat 119995 120392 539 + . . scaffold664 TRF Tandem_Repeat 120019 120308 110 + . . scaffold664 TRF Tandem_Repeat 122383 122658 446 + . . scaffold664 TRF Tandem_Repeat 124594 124642 98 + . . scaffold664 GLEAN promoter 124667 125666 0.999676 + . ID=CGI_10021437; scaffold664 GLEAN mRNA 125667 142536 0.999676 + . ID=CGI_10021437; scaffold664 TRF Tandem_Repeat 126946 126977 64 + . . scaffold664 TRF Tandem_Repeat 137647 137702 112 + . . scaffold664 GLEAN mRNA 145027 149175 0.999675 - . ID=CGI_10021438; scaffold664 TRF Tandem_Repeat 146590 146718 197 + . . scaffold664 TRF Tandem_Repeat 148591 148672 121 + . . scaffold664 TRF Tandem_Repeat 148697 148732 72 + . . scaffold664 GLEAN promoter 149176 150175 0.999675 - . ID=CGI_10021438; scaffold664 TRF Tandem_Repeat 153526 153567 59 + . . scaffold664 GLEAN mRNA 160574 167679 0.343522 - . ID=CGI_10021439; scaffold664 GLEAN promoter 167680 168679 0.343522 - . ID=CGI_10021439; scaffold664 TRF Tandem_Repeat 169844 170554 1016 + . . scaffold664 TRF Tandem_Repeat 186574 186620 85 + . . scaffold664 WUBlastX LINE_CR1-L2 191332 191493 50 - . . scaffold664 WUBlastX LINE_CR1-L2 191374 191541 22 - . . scaffold664 WUBlastX LINE_CR1-L2 191562 191762 29 - . . scaffold664 WUBlastX LINE_CR1-L2 191562 191702 49 - . . scaffold664 WUBlastX LINE_CR1-L2 191562 191654 61 - . . scaffold664 TRF Tandem_Repeat 193676 193710 70 + . . scaffold664 WUBlastX LINE_L1-Tx1 203412 203570 21 - . . scaffold664 WUBlastX LINE_L1 203430 203477 27 - . . scaffold664 WUBlastX LINE_L1-Tx1 203537 204211 276 - . . scaffold664 WUBlastX LINE_L1 204223 204384 40 - . . scaffold664 WUBlastX LINE_L1 204267 204560 83 - . . scaffold664 WUBlastX LINE_L1 204312 204809 23 - . . scaffold664 WUBlastX LINE_L1-Tx1 204315 204707 108 - . . scaffold664 WUBlastX LINE_L1-Tx1 204907 205269 55 - . . scaffold664 WUBlastX LINE_L1-Tx1 205221 205325 22 - . . scaffold664 WUBlastX LINE_L1 205322 205714 100 - . . scaffold664 WUBlastX DNA_IS4EU 207772 207843 20 + . . scaffold664 WUBlastX DNA_IS4EU 207896 208207 204 + . . scaffold664 WUBlastX LINE_Penelope 208603 209370 186 + . . scaffold664 GLEAN promoter 212415 213414 0.897817 + . ID=CGI_10021440; scaffold664 WUBlastX DNA_Sola 213358 215217 845 + . . scaffold664 GLEAN mRNA 213415 231457 0.897817 + . ID=CGI_10021440; scaffold664 WUBlastX DNA_Sola 215370 216005 172 + . . scaffold664 WUBlastX DNA_Sola 215463 216107 145 + . . scaffold664 TRF Tandem_Repeat 218200 218229 51 + . . scaffold664 TRF Tandem_Repeat 218200 218250 66 + . . scaffold664 TRF Tandem_Repeat 218207 218249 50 + . . scaffold664 GLEAN mRNA 220561 220917 0.529613 - . ID=CGI_10021441; scaffold664 GLEAN promoter 220918 221917 0.529613 - . ID=CGI_10021441; scaffold664 WUBlastX LINE_L1-Tx1 220944 221450 29 - . . scaffold664 WUBlastX LINE_CR1 221013 221303 74 - . . scaffold664 TRF Tandem_Repeat 226223 226311 162 + . . scaffold664 TRF Tandem_Repeat 238680 238705 52 + . . scaffold664 TRF Tandem_Repeat 239021 239077 64 + . . scaffold664 TRF Tandem_Repeat 247916 248630 568 + . . scaffold664 TRF Tandem_Repeat 248645 249723 630 + . . scaffold664 GLEAN promoter 250386 251385 0.82852 + . ID=CGI_10021442; scaffold664 GLEAN mRNA 251386 253119 0.82852 + . ID=CGI_10021442; scaffold664 TRF Tandem_Repeat 259548 259706 122 + . . scaffold664 TRF Tandem_Repeat 261472 261626 235 + . . scaffold664 TRF Tandem_Repeat 261478 261680 295 + . . scaffold664 TRF Tandem_Repeat 261478 261680 210 + . . scaffold664 GLEAN promoter 262013 263012 0.999676 + . ID=CGI_10021443; scaffold664 GLEAN mRNA 263013 267807 0.999676 + . ID=CGI_10021443; scaffold664 TRF Tandem_Repeat 264244 264293 100 + . . scaffold664 TRF Tandem_Repeat 265686 265833 122 + . . scaffold664 TRF Tandem_Repeat 265686 265833 122 + . . scaffold664 GLEAN promoter 275241 276240 0.999667 + . ID=CGI_10021444; scaffold664 GLEAN mRNA 276241 287455 0.999667 + . ID=CGI_10021444; scaffold664 TRF Tandem_Repeat 285738 285784 85 + . . scaffold664 TRF Tandem_Repeat 288232 288274 59 + . . scaffold664 GLEAN mRNA 290211 291938 0.530273 - . ID=CGI_10021445; scaffold664 GLEAN promoter 291939 292938 0.530273 - . ID=CGI_10021445; scaffold664 TRF Tandem_Repeat 293811 293846 54 + . . scaffold664 WUBlastX DNA_En-Spm 294965 295297 145 - . . scaffold664 WUBlastX DNA_En-Spm 295703 295825 95 - . . scaffold664 TRF Tandem_Repeat 297701 297753 106 + . . scaffold664 TRF Tandem_Repeat 298014 298170 137 + . . scaffold664 TRF Tandem_Repeat 298068 298163 98 + . . scaffold664 TRF Tandem_Repeat 299078 299196 113 + . . scaffold664 TRF Tandem_Repeat 299125 299189 70 + . . scaffold664 WUBlastX LTR_Ngaro 300120 300527 167 - . . scaffold664 WUBlastX LTR_Ngaro 300512 300832 48 - . . scaffold664 WUBlastX LTR_Ngaro 300817 300912 34 - . . scaffold664 WUBlastX LTR_Ngaro 300912 301301 107 - . . scaffold664 WUBlastX LTR_Ngaro 300918 301223 119 - . . scaffold664 GLEAN promoter 301033 302032 0.67043 + . ID=CGI_10021446; scaffold664 WUBlastX LTR_Ngaro 301352 301555 33 - . . scaffold664 WUBlastX LTR_Ngaro 301352 301474 36 - . . scaffold664 GLEAN mRNA 302033 315790 0.67043 + . ID=CGI_10021446; scaffold664 WUBlastX LTR_Ngaro 302359 302604 139 - . . scaffold664 TRF Tandem_Repeat 304429 304548 163 + . . scaffold664 TRF Tandem_Repeat 305486 305639 68 + . . scaffold664 TRF Tandem_Repeat 305572 305685 113 + . . scaffold664 WUBlastX LTR_DIRS 316797 317504 153 + . . scaffold664 WUBlastX LTR_Gypsy 317513 317545 30 + . . scaffold664 WUBlastX LTR_Gypsy 317554 318393 57 + . . scaffold664 WUBlastX LTR_DIRS 317698 318954 521 + . . scaffold664 WUBlastX LTR_Ngaro 321532 322575 807 + . . scaffold664 WUBlastX LTR_Ngaro 322521 323543 272 + . . scaffold664 TRF Tandem_Repeat 323690 323848 151 + . . scaffold664 WUBlastX LTR_DIRS 327896 328648 372 + . . scaffold664 TRF Tandem_Repeat 328888 329465 752 + . . scaffold664 TRF Tandem_Repeat 328888 329465 889 + . . scaffold664 TRF Tandem_Repeat 329929 330723 1176 + . . scaffold664 WUBlastX LTR_DIRS 331358 332353 426 + . . scaffold664 TRF Tandem_Repeat 339505 339554 91 + . . scaffold664 WUBlastX LTR_DIRS 341118 341384 40 + . . scaffold664 WUBlastX LTR_DIRS 341121 341282 57 + . . scaffold664 WUBlastX LTR_DIRS 344457 345362 281 + . . scaffold664 WUBlastX DNA_PiggyBac 352263 352994 56 + . . scaffold664 WUBlastX DNA_PiggyBac 352392 353018 167 + . . scaffold664 WUBlastX DNA_PiggyBac 352527 353072 169 + . . scaffold664 WUBlastX DNA_PiggyBac 352545 353003 204 + . . scaffold664 WUBlastX DNA_PiggyBac 353686 354075 200 + . . scaffold664 WUBlastX DNA_PiggyBac 355693 356241 217 + . . scaffold664 WUBlastX DNA_PiggyBac 355900 356313 72 + . . scaffold664 WUBlastX DNA_PiggyBac 356413 356664 98 + . . scaffold664 TRF Tandem_Repeat 364612 364680 131 + . . scaffold664 GLEAN mRNA 373118 396523 0.330346 - . ID=CGI_10021447; scaffold664 TRF Tandem_Repeat 377056 377326 506 + . . scaffold664 WUBlastX DNA_Harbinger 392824 393309 174 - . . scaffold664 WUBlastX DNA_Harbinger 393287 393658 125 - . . scaffold664 WUBlastX DNA_TcMar-Tc1 393850 394212 83 - . . scaffold664 WUBlastX DNA_TcMar-Tc1 393919 394272 107 - . . scaffold664 WUBlastX DNA_TcMar-Tc1 393946 394209 128 - . . scaffold664 WUBlastX DNA_TcMar-Marin 394187 394393 49 - . . scaffold664 GLEAN promoter 396524 397523 0.330346 - . ID=CGI_10021447; scaffold664 WUBlastX LINE_CR1-L2 399584 399940 101 - . . scaffold664 WUBlastX LINE_L2 399918 400523 287 - . . scaffold664 WUBlastX LINE_CR1 400272 400580 89 - . . scaffold664 GLEAN promoter 401102 402101 0.72436 + . ID=CGI_10021448; scaffold664 GLEAN mRNA 402102 402994 0.72436 + . ID=CGI_10021448; scaffold664 TRF Tandem_Repeat 403522 403554 66 + . . scaffold664 GLEAN mRNA 403877 406054 0.996819 - . ID=CGI_10021449; scaffold664 GLEAN promoter 406055 407054 0.996819 - . ID=CGI_10021449; scaffold664 TRF Tandem_Repeat 412472 412510 78 + . . scaffold664 TRF Tandem_Repeat 412996 413026 62 + . . scaffold664 WUBlastX DNA_Crypton 417773 417940 31 + . . scaffold664 WUBlastX DNA_Crypton 417788 417919 40 + . . scaffold664 WUBlastX DNA_Crypton 418029 418178 23 + . . scaffold664 TRF Tandem_Repeat 428491 428548 71 + . . scaffold664 TRF Tandem_Repeat 428491 428560 106 + . . scaffold664 TRF Tandem_Repeat 428502 428560 84 + . . scaffold664 TRF Tandem_Repeat 428705 429453 948 + . . scaffold664 TRF Tandem_Repeat 429651 429693 86 + . . scaffold664 GLEAN mRNA 440336 447402 0.936514 - . ID=CGI_10021450; scaffold664 TRF Tandem_Repeat 443162 443186 50 + . . scaffold664 GLEAN promoter 447403 448402 0.936514 - . ID=CGI_10021450; scaffold664 TRF Tandem_Repeat 448337 448387 102 + . . scaffold664 TRF Tandem_Repeat 449242 449274 66 + . . scaffold664 TRF Tandem_Repeat 450476 450555 63 + . . scaffold664 WUBlastX DNA_PiggyBac 453631 454269 56 - . . scaffold664 WUBlastX DNA_PiggyBac 453823 454221 196 - . . scaffold664 WUBlastX DNA_PiggyBac 453832 454296 130 - . . scaffold664 WUBlastX DNA_PiggyBac 454728 455354 154 - . . scaffold664 WUBlastX DNA_PiggyBac 454743 455201 209 - . . scaffold664 TRF Tandem_Repeat 461285 461317 66 + . . scaffold664 TRF Tandem_Repeat 461340 461383 88 + . . scaffold664 TRF Tandem_Repeat 463162 463215 108 + . . scaffold664 TRF Tandem_Repeat 463944 464031 97 + . . scaffold664 TRF Tandem_Repeat 466273 466302 51 + . . scaffold664 GLEAN mRNA 471682 472095 0.999372 - . ID=CGI_10021451; scaffold664 GLEAN promoter 472096 473095 0.999372 - . ID=CGI_10021451; scaffold664 WUBlastX LTR_Gypsy 472255 472452 26 - . . scaffold664 WUBlastX LTR_Gypsy 472294 472446 41 - . . scaffold664 WUBlastX LINE_L2 474514 475173 20 + . . scaffold664 WUBlastX LINE_CR1-L2 474661 475254 52 + . . scaffold664 WUBlastX LINE_L2 474850 475257 88 + . . scaffold664 WUBlastX LINE_CR1-L2 474940 475350 134 + . . scaffold664 WUBlastX LINE_CR1-L2 474940 475281 173 + . . scaffold664 TRF Tandem_Repeat 481112 481149 76 + . . scaffold664 WUBlastX LINE_RTE-X 486305 486622 59 - . . scaffold664 WUBlastX LINE_RTE-X 486413 486622 73 - . . scaffold664 WUBlastX LINE_RTE-X 486672 487004 114 - . . scaffold664 WUBlastX LINE_RTE-X 486989 487183 107 - . . scaffold664 GLEAN mRNA 493536 494227 0.556615 - . ID=CGI_10021452; scaffold664 WUBlastX LTR_Gypsy 493594 494001 49 - . . scaffold664 GLEAN promoter 494228 495227 0.556615 - . ID=CGI_10021452; scaffold664 WUBlastX LTR_Gypsy 496229 496630 201 - . . scaffold664 WUBlastX LTR_Gypsy 496645 496842 100 - . . scaffold664 WUBlastX LTR_Gypsy 496651 496809 104 - . . scaffold664 WUBlastX LTR_Ngaro 496825 496932 35 - . . scaffold664 WUBlastX LTR_Ngaro 496916 497074 92 - . . scaffold664 WUBlastX LTR_Ngaro 497070 497171 66 - . . scaffold664 WUBlastX LTR_Ngaro 497070 497231 40 - . . scaffold664 WUBlastX LTR_Ngaro 497831 498055 67 - . . scaffold664 WUBlastX LTR_Ngaro 498340 498654 46 - . . scaffold664 GLEAN mRNA 503105 503419 0.999344 - . ID=CGI_10021453; scaffold664 WUBlastX LINE_RTE-X 503138 503503 52 - . . scaffold664 WUBlastX LINE_RTE-X 503195 503407 95 - . . scaffold664 WUBlastX LINE_RTE-X 503216 503500 76 - . . scaffold664 GLEAN promoter 503420 504419 0.999344 - . ID=CGI_10021453; scaffold664 WUBlastX DNA_IS4EU 507634 507813 36 + . . scaffold664 WUBlastX DNA_IS4EU 507915 508001 42 + . . scaffold664 WUBlastX DNA_IS4EU 512415 513104 405 - . . scaffold664 WUBlastX DNA_IS4EU 512427 513224 339 - . . scaffold664 WUBlastX DNA_IS4EU 513215 513313 28 - . . scaffold664 WUBlastX LTR_DIRS 515103 515357 71 - . . scaffold664 WUBlastX LTR_Pao 515817 516194 119 - . . scaffold664 WUBlastX LTR_Pao 515895 516275 274 - . . scaffold664 WUBlastX LTR_Pao 515955 516380 129 - . . scaffold664 WUBlastX LTR_Pao 516388 516738 341 - . . scaffold664 WUBlastX LTR_Pao 516412 516810 195 - . . scaffold664 WUBlastX LTR_Pao 516746 516826 27 - . . scaffold664 WUBlastX LTR_Pao 516835 517626 625 - . . scaffold664 WUBlastX LTR_Pao 517628 518635 775 - . . scaffold664 WUBlastX LTR_Pao 518638 518838 153 - . . scaffold664 WUBlastX LTR_Pao 518837 519142 105 - . . scaffold664 WUBlastX LTR_Pao 518933 519208 107 - . . scaffold664 WUBlastX LTR_Copia 520094 520231 25 - . . scaffold664 WUBlastX LTR_Gypsy 520278 521045 203 - . . scaffold664 WUBlastX LTR_Gypsy 520395 521066 343 - . . scaffold664 WUBlastX LTR_Copia 520896 521102 80 - . . scaffold664 WUBlastX LTR_Gypsy 521406 521546 30 - . . scaffold664 WUBlastX LTR_Gypsy 521430 521525 30 - . . scaffold664 WUBlastX DNA_P 521527 521790 79 - . . scaffold664 WUBlastX LTR_Gypsy 521849 521926 24 - . . scaffold664 WUBlastX LTR_Ngaro 537352 537552 114 - . . scaffold664 WUBlastX LTR_Ngaro 538532 539002 67 - . . scaffold664 WUBlastX LTR_Ngaro 538640 538969 104 - . . scaffold664 WUBlastX LTR_Ngaro 538975 539325 143 - . . scaffold664 WUBlastX LTR_Ngaro 539292 540614 618 - . . scaffold664 WUBlastX LTR_Ngaro 540333 540671 41 - . . scaffold664 WUBlastX LTR_Ngaro 540982 541176 28 - . . scaffold664 WUBlastX LTR_Ngaro 541759 541872 52 - . . scaffold664 WUBlastX LTR_Ngaro 541916 541996 20 - . . scaffold664 WUBlastX LTR_Ngaro 542917 543288 61 + . . scaffold664 WUBlastX LTR_Ngaro 542998 543300 77 + . . scaffold664 WUBlastX LTR_Ngaro 543413 543670 76 - . . scaffold664 GLEAN mRNA 543660 543839 0.999372 - . ID=CGI_10021455; scaffold664 GLEAN promoter 543840 544839 0.999372 - . ID=CGI_10021455; scaffold664 GLEAN promoter 546583 547582 0.239728 + . ID=CGI_10021456; scaffold664 GLEAN mRNA 547583 596494 0.239728 + . ID=CGI_10021456; scaffold664 WUBlastX LTR_Gypsy 548045 548482 56 + . . scaffold664 WUBlastX DNA_hAT-Tip100 550878 551153 57 + . . scaffold664 WUBlastX DNA_Kolobok-Hyd 556961 557128 41 + . . scaffold664 WUBlastX DNA_Kolobok-Hyd 558102 558305 52 + . . scaffold664 TRF Tandem_Repeat 564980 565005 52 + . . scaffold664 TRF Tandem_Repeat 570003 570038 72 + . . scaffold664 TRF Tandem_Repeat 570037 570082 92 + . . scaffold664 TRF Tandem_Repeat 570080 570126 85 + . . scaffold664 TRF Tandem_Repeat 573657 573690 68 + . . scaffold664 WUBlastX LTR_Ngaro 577636 577947 70 - . . scaffold664 WUBlastX LTR_Ngaro 577896 578225 66 - . . scaffold664 WUBlastX LINE_RTE-X 578596 578982 23 - . . scaffold664 TRF Tandem_Repeat 581417 581442 52 + . . scaffold664 TRF Tandem_Repeat 584205 584292 113 + . . scaffold664 TRF Tandem_Repeat 584260 584347 95 + . . scaffold664 TRF Tandem_Repeat 585845 585951 117 + . . scaffold664 TRF Tandem_Repeat 587870 587954 161 + . . scaffold664 TRF Tandem_Repeat 590205 590246 68 + . . scaffold664 TRF Tandem_Repeat 629750 629813 128 + . . scaffold664 TRF Tandem_Repeat 629917 630585 835 + . . scaffold664 TRF Tandem_Repeat 629917 630585 835 + . . scaffold664 WUBlastX LINE_L1-Tx1 633270 633497 29 - . . scaffold664 TRF Tandem_Repeat 639578 641841 3153 + . . scaffold664 GLEAN mRNA 643748 644056 0.999375 - . ID=CGI_10021457; scaffold664 GLEAN promoter 644057 645056 0.999375 - . ID=CGI_10021457; scaffold664 WUBlastX LTR_DIRS 645291 645506 57 - . . scaffold664 GLEAN promoter 646298 647297 0.986751 + . ID=CGI_10021458; scaffold664 GLEAN mRNA 647298 667739 0.986751 + . ID=CGI_10021458; scaffold664 WUBlastX LTR_Pao 648781 649170 289 + . . scaffold664 WUBlastX LTR_Pao 649137 649508 190 + . . scaffold664 WUBlastX LTR_Pao 649991 651130 1107 - . . scaffold664 WUBlastX LTR_Pao 650761 652842 1367 + . . scaffold664 TRF Tandem_Repeat 654777 654822 65 + . . scaffold664 WUBlastX DNA_TcMar-Marin 655894 656010 33 - . . scaffold664 WUBlastX DNA_TcMar-Marin 655927 656016 45 - . . scaffold664 WUBlastX DNA_TcMar-Marin 655994 656299 43 - . . scaffold664 WUBlastX DNA_TcMar-Marin 655994 656161 52 - . . scaffold664 WUBlastX DNA_TcMar-Marin 656069 656146 58 - . . scaffold664 WUBlastX DNA_TcMar-Marin 656090 656176 51 - . . scaffold664 WUBlastX DNA_TcMar-Marin 656703 656783 24 - . . scaffold664 WUBlastX DNA_TcMar-Marin 656718 656783 36 - . . scaffold664 WUBlastX DNA_TcMar-Marin 656777 656941 22 - . . scaffold664 WUBlastX DNA_TcMar-Marin 656884 657039 64 - . . scaffold664 WUBlastX RC_Helitron 660282 660518 40 - . . scaffold664 WUBlastX RC_Helitron 660584 660667 20 - . . scaffold664 TRF Tandem_Repeat 675070 675737 817 + . . scaffold665 GLEAN mRNA 7768 15684 0.19964 - . ID=CGI_10008287; scaffold665 TRF Tandem_Repeat 13847 13936 72 + . . scaffold665 GLEAN promoter 15685 16684 0.19964 - . ID=CGI_10008287; scaffold665 GLEAN promoter 17102 18101 0.999676 + . ID=CGI_10008288; scaffold665 GLEAN mRNA 18102 22792 0.999676 + . ID=CGI_10008288; scaffold665 TRF Tandem_Repeat 26457 26544 77 + . . scaffold665 WUBlastX LINE_L1-Tx1 30974 32881 592 - . . scaffold665 TRF Tandem_Repeat 36047 36089 86 + . . scaffold665 GLEAN promoter 40796 41795 1 + . ID=CGI_10008289; scaffold665 GLEAN mRNA 41796 43997 1 + . ID=CGI_10008289; scaffold665 GLEAN promoter 49924 50923 1 + . ID=CGI_10008290; scaffold665 GLEAN mRNA 50924 52503 1 + . ID=CGI_10008290; scaffold665 TRF Tandem_Repeat 53065 53391 332 + . . scaffold665 TRF Tandem_Repeat 54727 54758 64 + . . scaffold665 GLEAN promoter 56457 57456 1 + . ID=CGI_10008291; scaffold665 GLEAN mRNA 57457 59120 1 + . ID=CGI_10008291; scaffold665 TRF Tandem_Repeat 59345 60083 964 + . . scaffold665 TRF Tandem_Repeat 61505 61548 79 + . . scaffold665 GLEAN promoter 64198 65197 0.999676 + . ID=CGI_10008292; scaffold665 GLEAN mRNA 65198 69133 0.999676 + . ID=CGI_10008292; scaffold665 GLEAN mRNA 71065 96182 0.997991 - . ID=CGI_10008293; scaffold665 TRF Tandem_Repeat 71860 72066 301 + . . scaffold665 TRF Tandem_Repeat 72494 72529 63 + . . scaffold665 TRF Tandem_Repeat 84813 85417 755 + . . scaffold665 GLEAN promoter 96183 97182 0.997991 - . ID=CGI_10008293; scaffold665 GLEAN mRNA 101719 103099 1 - . ID=CGI_10008294; scaffold665 GLEAN promoter 102946 103945 1 + . ID=CGI_10008295; scaffold665 GLEAN promoter 103100 104099 1 - . ID=CGI_10008294; scaffold665 GLEAN mRNA 103946 105493 1 + . ID=CGI_10008295; scaffold665 TRF Tandem_Repeat 106215 106781 929 + . . scaffold665 WUBlastX LINE_RTE-X 110057 110446 231 + . . scaffold665 WUBlastX LINE_RTE-X 110528 113857 1974 + . . scaffold665 WUBlastX LINE_RTE-X 113225 113980 160 + . . scaffold665 TRF Tandem_Repeat 117756 117948 233 + . . scaffold665 GLEAN mRNA 119766 126884 0.748515 - . ID=CGI_10008296; scaffold665 GLEAN promoter 126240 127239 1 + . ID=CGI_10008297; scaffold665 GLEAN promoter 126885 127884 0.748515 - . ID=CGI_10008296; scaffold665 GLEAN mRNA 127240 138513 1 + . ID=CGI_10008297; scaffold665 TRF Tandem_Repeat 132964 133176 408 + . . scaffold665 TRF Tandem_Repeat 133693 133837 128 + . . scaffold665 TRF Tandem_Repeat 133797 133975 139 + . . scaffold665 GLEAN promoter 137649 138648 0.835163 + . ID=CGI_10008298; scaffold665 GLEAN mRNA 138649 149031 0.835163 + . ID=CGI_10008298; scaffold665 TRF Tandem_Repeat 141413 141630 373 + . . scaffold665 TRF Tandem_Repeat 144131 144834 768 + . . scaffold665 TRF Tandem_Repeat 144952 144985 50 + . . scaffold665 TRF Tandem_Repeat 145245 146427 807 + . . scaffold665 TRF Tandem_Repeat 145245 146416 1275 + . . scaffold665 TRF Tandem_Repeat 152730 152787 116 + . . scaffold665 GLEAN promoter 154949 155948 0.999994 + . ID=CGI_10008299; scaffold665 GLEAN mRNA 155949 158543 0.999994 + . ID=CGI_10008299; scaffold665 WUBlastX LINE_L1 163844 164737 31 + . . scaffold665 WUBlastX LINE_L1 164054 164728 224 + . . scaffold665 WUBlastX LINE_L1 164724 164792 26 + . . scaffold665 WUBlastX LINE_I 164790 165116 30 + . . scaffold665 WUBlastX LINE_RTE-BovB 164946 165170 30 + . . scaffold665 WUBlastX LINE_RTE-X 164983 166095 418 + . . scaffold665 WUBlastX LINE_RTE-X 165157 166773 609 + . . scaffold665 GLEAN mRNA 169833 174631 1 - . ID=CGI_10008300; scaffold665 GLEAN promoter 174632 175631 1 - . ID=CGI_10008300; scaffold665 GLEAN mRNA 175862 178216 1 - . ID=CGI_10008301; scaffold665 GLEAN promoter 178217 179216 1 - . ID=CGI_10008301; scaffold665 GLEAN promoter 179817 180816 0.990769 + . ID=CGI_10008302; scaffold665 GLEAN mRNA 180817 191038 0.990769 + . ID=CGI_10008302; scaffold665 TRF Tandem_Repeat 189088 189168 162 + . . scaffold665 TRF Tandem_Repeat 194008 194178 231 + . . scaffold665 GLEAN promoter 195174 196173 0.999855 + . ID=CGI_10008303; scaffold665 GLEAN mRNA 196174 198514 0.999855 + . ID=CGI_10008303; scaffold665 TRF Tandem_Repeat 197449 197550 168 + . . scaffold666 TRF Tandem_Repeat 8732 8776 90 + . . scaffold666 WUBlastX LTR_Ngaro 9482 9547 23 + . . scaffold666 WUBlastX LTR_Ngaro 9519 9932 25 + . . scaffold666 WUBlastX LTR_Ngaro 9595 9822 32 + . . scaffold666 WUBlastX LTR_Ngaro 9813 9932 78 + . . scaffold666 TRF Tandem_Repeat 14119 14169 50 + . . scaffold666 TRF Tandem_Repeat 14135 14165 53 + . . scaffold666 WUBlastX LINE_RTE-X 15544 15765 89 + . . scaffold666 WUBlastX LINE_RTE-X 15598 15882 72 + . . scaffold667 GLEAN mRNA 6729 22533 0.999844 - . ID=CGI_10005354; scaffold667 WUBlastX LINE_CR1-L2 18388 18624 54 + . . scaffold667 WUBlastX LINE_CR1-L2 18430 18693 100 + . . scaffold667 WUBlastX LINE_CR1 18439 18756 44 + . . scaffold667 TRF Tandem_Repeat 18789 18845 87 + . . scaffold667 TRF Tandem_Repeat 21448 21476 58 + . . scaffold667 GLEAN promoter 22534 23533 0.999844 - . ID=CGI_10005354; scaffold667 GLEAN mRNA 23627 24384 0.873689 - . ID=CGI_10005355; scaffold667 GLEAN promoter 24385 25384 0.873689 - . ID=CGI_10005355; scaffold667 TRF Tandem_Repeat 39558 39591 68 + . . scaffold667 TRF Tandem_Repeat 40578 40619 84 + . . scaffold667 GLEAN mRNA 44665 51693 0.999675 - . ID=CGI_10005356; scaffold667 GLEAN promoter 51694 52693 0.999675 - . ID=CGI_10005356; scaffold667 TRF Tandem_Repeat 52371 52451 72 + . . scaffold667 TRF Tandem_Repeat 85437 85711 349 + . . scaffold667 TRF Tandem_Repeat 85437 85711 304 + . . scaffold667 TRF Tandem_Repeat 86542 86715 278 + . . scaffold667 TRF Tandem_Repeat 86544 86702 157 + . . scaffold667 WUBlastX RC_Helitron 88215 88466 72 + . . scaffold667 WUBlastX RC_Helitron 88272 88457 95 + . . scaffold667 WUBlastX RC_Helitron 88487 88564 24 + . . scaffold667 WUBlastX RC_Helitron 88499 89131 49 + . . scaffold667 WUBlastX LTR_Gypsy 89456 89911 30 - . . scaffold667 WUBlastX LTR_Gypsy 89576 89914 42 - . . scaffold667 WUBlastX LTR_Gypsy-Cigr 89699 89914 83 - . . scaffold667 WUBlastX LTR_Gypsy 89832 90266 195 - . . scaffold667 WUBlastX LTR_Gypsy 89922 90269 305 - . . scaffold667 WUBlastX LTR_Gypsy-Cigr 90260 90619 149 - . . scaffold667 WUBlastX LTR_Gypsy-Cigr 90263 90697 126 - . . scaffold667 WUBlastX LTR_Gypsy-Cigr 90643 90720 31 - . . scaffold667 WUBlastX LTR_Gypsy 90747 91028 71 - . . scaffold667 WUBlastX LTR_Gypsy 90804 91028 95 - . . scaffold667 WUBlastX LTR_Gypsy 90843 91112 113 - . . scaffold667 WUBlastX LTR_Gypsy-Cigr 90858 91028 175 - . . scaffold667 WUBlastX LTR_Gypsy 91090 91506 178 - . . scaffold667 WUBlastX LTR_Gypsy 91189 91704 136 - . . scaffold667 WUBlastX LTR_Gypsy 91189 91587 186 - . . scaffold667 WUBlastX LTR_Gypsy 91189 92310 107 - . . scaffold667 WUBlastX LTR_Gypsy 91189 91512 257 - . . scaffold667 WUBlastX LTR_Gypsy 91981 92502 37 - . . scaffold667 WUBlastX LTR_Gypsy 92026 92373 76 - . . scaffold667 WUBlastX LTR_Gypsy 92520 92591 24 - . . scaffold667 WUBlastX LTR_Gypsy 92532 93080 92 - . . scaffold667 WUBlastX LTR_Gypsy-Cigr 92769 93293 182 - . . scaffold667 TRF Tandem_Repeat 94509 94544 56 + . . scaffold667 TRF Tandem_Repeat 99206 99720 591 + . . scaffold667 GLEAN promoter 107548 108547 0.99995 + . ID=CGI_10005357; scaffold667 GLEAN mRNA 108548 112297 0.99995 + . ID=CGI_10005357; scaffold667 TRF Tandem_Repeat 114097 114187 119 + . . scaffold667 TRF Tandem_Repeat 117744 117792 98 + . . scaffold669 GLEAN promoter 1079 2078 0.544852 + . ID=CGI_10001166; scaffold669 GLEAN mRNA 2079 10135 0.544852 + . ID=CGI_10001166; scaffold67 TRF Tandem_Repeat 1356 1395 80 + . . scaffold67 GLEAN promoter 2703 3702 1 + . ID=CGI_10018260; scaffold67 GLEAN mRNA 3703 11345 1 + . ID=CGI_10018260; scaffold67 TRF Tandem_Repeat 8473 8530 116 + . . scaffold67 TRF Tandem_Repeat 8550 8578 58 + . . scaffold67 GLEAN mRNA 22173 32149 1 - . ID=CGI_10018261; scaffold67 WUBlastX DNA_hAT-Tip100 28442 28747 39 + . . scaffold67 WUBlastX DNA_hAT-Tip100 28493 28807 58 + . . scaffold67 WUBlastX DNA_hAT-Tip100 28846 29244 101 + . . scaffold67 WUBlastX DNA_hAT-Tip100 29223 29591 113 + . . scaffold67 WUBlastX DNA_hAT-Tip100 30674 30766 30 + . . scaffold67 WUBlastX DNA_hAT-Tip100 30892 30993 28 + . . scaffold67 TRF Tandem_Repeat 31242 31411 250 + . . scaffold67 GLEAN promoter 32150 33149 1 - . ID=CGI_10018261; scaffold67 GLEAN promoter 44079 45078 0.993533 + . ID=CGI_10018262; scaffold67 GLEAN mRNA 45079 69757 0.993533 + . ID=CGI_10018262; scaffold67 GLEAN mRNA 52364 54253 0.999999 - . ID=CGI_10018263; scaffold67 GLEAN promoter 54254 55253 0.999999 - . ID=CGI_10018263; scaffold67 TRF Tandem_Repeat 56170 56200 62 + . . scaffold67 TRF Tandem_Repeat 64435 64505 121 + . . scaffold67 GLEAN mRNA 72770 90591 0.702383 - . ID=CGI_10018264; scaffold67 WUBlastX DNA_TcMar-Tc2 82412 83734 1035 - . . scaffold67 WUBlastX DNA_IS4EU 90147 90341 40 - . . scaffold67 WUBlastX DNA_IS4EU 90153 90482 39 - . . scaffold67 GLEAN promoter 90592 91591 0.702383 - . ID=CGI_10018264; scaffold67 GLEAN mRNA 92164 98870 0.999997 - . ID=CGI_10018265; scaffold67 GLEAN promoter 98871 99870 0.999997 - . ID=CGI_10018265; scaffold67 GLEAN mRNA 111455 114039 0.999999 - . ID=CGI_10018266; scaffold67 GLEAN promoter 114040 115039 0.999999 - . ID=CGI_10018266; scaffold67 TRF Tandem_Repeat 114206 114246 82 + . . scaffold67 GLEAN promoter 156766 157765 0.710748 + . ID=CGI_10018267; scaffold67 GLEAN mRNA 157766 172539 0.710748 + . ID=CGI_10018267; scaffold67 TRF Tandem_Repeat 160612 160657 92 + . . scaffold67 GLEAN promoter 171793 172792 0.997116 + . ID=CGI_10018268; scaffold67 GLEAN mRNA 172793 187122 0.997116 + . ID=CGI_10018268; scaffold67 TRF Tandem_Repeat 181028 181064 56 + . . scaffold67 TRF Tandem_Repeat 182484 183581 1955 + . . scaffold67 TRF Tandem_Repeat 184248 184541 293 + . . scaffold67 TRF Tandem_Repeat 184275 184669 170 + . . scaffold67 TRF Tandem_Repeat 184372 184482 70 + . . scaffold67 TRF Tandem_Repeat 184979 185079 80 + . . scaffold67 TRF Tandem_Repeat 192191 192240 100 + . . scaffold67 WUBlastX LTR_Ngaro 231870 232025 29 + . . scaffold67 WUBlastX LTR_Ngaro 232048 232251 79 + . . scaffold67 WUBlastX LTR_Ngaro 233526 234479 306 + . . scaffold67 WUBlastX LTR_Ngaro 234078 234479 328 + . . scaffold67 WUBlastX LTR_Ngaro 234498 234683 98 + . . scaffold67 WUBlastX LTR_Ngaro 234689 235027 136 + . . scaffold67 WUBlastX LTR_Ngaro 235023 235562 164 + . . scaffold67 TRF Tandem_Repeat 236134 236316 366 + . . scaffold67 TRF Tandem_Repeat 238458 238491 50 + . . scaffold67 TRF Tandem_Repeat 246584 246628 90 + . . scaffold67 TRF Tandem_Repeat 248438 248498 122 + . . scaffold67 GLEAN mRNA 250883 268013 0.462557 - . ID=CGI_10018269; scaffold67 TRF Tandem_Repeat 253076 253551 288 + . . scaffold67 TRF Tandem_Repeat 267396 267420 50 + . . scaffold67 TRF Tandem_Repeat 267568 267665 133 + . . scaffold67 TRF Tandem_Repeat 267747 267790 88 + . . scaffold67 GLEAN promoter 268014 269013 0.462557 - . ID=CGI_10018269; scaffold67 TRF Tandem_Repeat 272173 272250 52 + . . scaffold67 TRF Tandem_Repeat 272256 272323 52 + . . scaffold67 TRF Tandem_Repeat 272262 272355 86 + . . scaffold67 TRF Tandem_Repeat 273006 273081 50 + . . scaffold67 TRF Tandem_Repeat 275396 275452 114 + . . scaffold67 TRF Tandem_Repeat 276016 276056 73 + . . scaffold67 WUBlastX LINE_R2-Hero 276070 276345 66 + . . scaffold67 WUBlastX LINE_R2-Hero 276157 276297 77 + . . scaffold67 WUBlastX LINE_R2-Hero 276291 276641 81 + . . scaffold67 WUBlastX LINE_R2-Hero 276348 276650 96 + . . scaffold67 WUBlastX LINE_R2-Hero 276659 276820 31 + . . scaffold67 WUBlastX LINE_R2-Hero 276662 276769 32 + . . scaffold67 GLEAN promoter 286505 287504 1 + . ID=CGI_10018270; scaffold67 GLEAN mRNA 287505 289760 1 + . ID=CGI_10018270; scaffold67 GLEAN mRNA 294583 297470 0.684253 - . ID=CGI_10018271; scaffold67 GLEAN promoter 297471 298470 0.684253 - . ID=CGI_10018271; scaffold67 TRF Tandem_Repeat 300374 300472 173 + . . scaffold67 TRF Tandem_Repeat 300521 300614 107 + . . scaffold67 TRF Tandem_Repeat 301863 301953 69 + . . scaffold67 TRF Tandem_Repeat 301911 302048 86 + . . scaffold67 TRF Tandem_Repeat 301953 302053 120 + . . scaffold67 GLEAN promoter 323533 324532 0.99254 + . ID=CGI_10018272; scaffold67 GLEAN mRNA 324533 363430 0.99254 + . ID=CGI_10018272; scaffold67 TRF Tandem_Repeat 324765 324821 114 + . . scaffold67 TRF Tandem_Repeat 335480 335524 63 + . . scaffold67 TRF Tandem_Repeat 337918 338251 424 + . . scaffold67 TRF Tandem_Repeat 338116 338250 72 + . . scaffold67 TRF Tandem_Repeat 340165 340424 425 + . . scaffold67 WUBlastX LINE_Penelope 377328 378257 207 - . . scaffold67 WUBlastX LINE_Penelope 377454 378461 21 - . . scaffold67 GLEAN promoter 388741 389740 0.990037 + . ID=CGI_10018273; scaffold67 GLEAN mRNA 389741 401939 0.990037 + . ID=CGI_10018273; scaffold67 TRF Tandem_Repeat 397974 398025 104 + . . scaffold67 WUBlastX LTR_Gypsy 398106 398288 23 - . . scaffold67 GLEAN promoter 422777 423776 0.999372 + . ID=CGI_10018275; scaffold67 GLEAN mRNA 423113 423409 0.999339 - . ID=CGI_10018274; scaffold67 GLEAN promoter 423410 424409 0.999339 - . ID=CGI_10018274; scaffold67 GLEAN mRNA 423777 424031 0.999372 + . ID=CGI_10018275; scaffold67 WUBlastX LINE_RTE-X 425427 425627 61 + . . scaffold67 WUBlastX LINE_RTE-X 425481 425624 78 + . . scaffold67 WUBlastX LINE_RTE-X 425484 425675 25 + . . scaffold67 TRF Tandem_Repeat 437925 437982 116 + . . scaffold67 TRF Tandem_Repeat 442281 442309 58 + . . scaffold67 TRF Tandem_Repeat 458241 458358 80 + . . scaffold67 TRF Tandem_Repeat 459130 459186 114 + . . scaffold67 GLEAN mRNA 461670 464781 1 - . ID=CGI_10018276; scaffold67 GLEAN promoter 464782 465781 1 - . ID=CGI_10018276; scaffold67 GLEAN promoter 465118 466117 1 + . ID=CGI_10018277; scaffold67 TRF Tandem_Repeat 465346 465379 50 + . . scaffold67 GLEAN mRNA 466118 469559 1 + . ID=CGI_10018277; scaffold67 TRF Tandem_Repeat 467623 467676 101 + . . scaffold67 GLEAN promoter 469782 470781 1 + . ID=CGI_10018278; scaffold67 GLEAN mRNA 470782 473077 1 + . ID=CGI_10018278; scaffold67 TRF Tandem_Repeat 474350 474688 434 + . . scaffold67 TRF Tandem_Repeat 474352 474697 437 + . . scaffold67 TRF Tandem_Repeat 475349 475587 255 + . . scaffold67 TRF Tandem_Repeat 475349 475587 226 + . . scaffold67 TRF Tandem_Repeat 476387 476465 122 + . . scaffold67 GLEAN mRNA 478630 479967 0.999999 - . ID=CGI_10018279; scaffold67 GLEAN promoter 479968 480967 0.999999 - . ID=CGI_10018279; scaffold67 TRF Tandem_Repeat 487229 487268 80 + . . scaffold67 TRF Tandem_Repeat 493298 493362 130 + . . scaffold67 WUBlastX LTR_Gypsy 494644 494862 21 + . . scaffold67 WUBlastX LTR_Gypsy 494749 495669 157 + . . scaffold67 WUBlastX LTR_Gypsy-Cigr 494752 495288 165 + . . scaffold67 WUBlastX LTR_Gypsy 495660 496838 238 + . . scaffold67 WUBlastX LTR_Gypsy 496696 496923 68 + . . scaffold67 WUBlastX LTR_Gypsy 497732 497770 20 + . . scaffold67 WUBlastX LTR_Gypsy 497926 498321 145 + . . scaffold67 WUBlastX LTR_Gypsy 498040 498321 175 + . . scaffold67 WUBlastX LTR_Gypsy 498219 498656 421 + . . scaffold67 WUBlastX LTR_Gypsy 498554 500800 1258 + . . scaffold67 WUBlastX LTR_Gypsy-Cigr 500747 500842 45 + . . scaffold67 TRF Tandem_Repeat 501798 501838 82 + . . scaffold67 WUBlastX LINE_Penelope 503385 504257 56 - . . scaffold67 WUBlastX LINE_Penelope 503550 504257 138 - . . scaffold67 WUBlastX LINE_Penelope 503904 504569 135 - . . scaffold67 GLEAN mRNA 504685 505146 0.761386 - . ID=CGI_10018280; scaffold67 GLEAN promoter 505147 506146 0.761386 - . ID=CGI_10018280; scaffold67 GLEAN mRNA 514362 516212 0.989476 - . ID=CGI_10018281; scaffold67 GLEAN promoter 516213 517212 0.989476 - . ID=CGI_10018281; scaffold670 GLEAN mRNA 720 15001 0.999481 - . ID=CGI_10007406; scaffold670 TRF Tandem_Repeat 1029 1847 930 + . . scaffold670 GLEAN promoter 15002 16001 0.999481 - . ID=CGI_10007406; scaffold670 GLEAN promoter 19973 20972 1 + . ID=CGI_10007407; scaffold670 TRF Tandem_Repeat 20009 20083 150 + . . scaffold670 GLEAN mRNA 20973 28108 1 + . ID=CGI_10007407; scaffold670 TRF Tandem_Repeat 25479 26354 722 + . . scaffold670 TRF Tandem_Repeat 25482 26246 740 + . . scaffold670 TRF Tandem_Repeat 25536 26320 909 + . . scaffold670 GLEAN promoter 39054 40053 0.55783 + . ID=CGI_10007409; scaffold670 GLEAN mRNA 39251 49763 0.999673 - . ID=CGI_10007408; scaffold670 GLEAN mRNA 40054 49626 0.55783 + . ID=CGI_10007409; scaffold670 TRF Tandem_Repeat 41988 42015 56 + . . scaffold670 GLEAN promoter 49764 50763 0.999673 - . ID=CGI_10007408; scaffold670 WUBlastX DNA 50740 51012 30 - . . scaffold670 WUBlastX DNA_MuDR 50740 50934 71 - . . scaffold670 WUBlastX LINE_RTE-BovB 51966 52559 228 - . . scaffold670 WUBlastX LINE_RTE-BovB 52585 52650 22 - . . scaffold670 WUBlastX LINE_RTE-BovB 52600 52653 24 - . . scaffold670 WUBlastX LTR_Gypsy 58237 59076 228 + . . scaffold670 WUBlastX LTR_Copia 58951 59172 54 + . . scaffold670 WUBlastX LTR_Gypsy 59145 61700 1618 + . . scaffold670 WUBlastX LTR_Gypsy 61715 63148 994 + . . scaffold670 WUBlastX LTR_Gypsy 61715 62893 1007 + . . scaffold670 WUBlastX LTR_Gypsy 63065 63175 37 + . . scaffold670 WUBlastX LINE_RTE-BovB 64566 64688 63 + . . scaffold670 WUBlastX LTR_Gypsy 76183 76368 21 + . . scaffold670 WUBlastX LTR_Gypsy 76246 76368 53 + . . scaffold670 WUBlastX LTR_Gypsy 76286 76579 74 + . . scaffold670 WUBlastX LTR_Gypsy 76352 76942 96 + . . scaffold670 WUBlastX LTR_Gypsy-Cigr 76376 76867 136 + . . scaffold670 WUBlastX LTR_Gypsy 76736 76990 33 + . . scaffold670 WUBlastX LTR_Gypsy 77146 77904 114 + . . scaffold670 WUBlastX LTR_Gypsy 77545 77970 235 + . . scaffold670 WUBlastX LTR_Gypsy 77593 78051 50 + . . scaffold670 WUBlastX DNA_hAT-Tip100 78184 78513 66 + . . scaffold670 WUBlastX DNA_P 78184 78450 82 + . . scaffold670 WUBlastX DNA_Kolobok 78665 78874 87 + . . scaffold670 WUBlastX DNA_Kolobok 78716 78904 52 + . . scaffold670 WUBlastX DNA_IS4EU 87258 87560 115 + . . scaffold670 WUBlastX DNA_IS4EU 87402 88286 183 + . . scaffold670 WUBlastX DNA_IS4EU 87735 88286 294 + . . scaffold670 WUBlastX DNA_IS4EU 87999 88373 129 + . . scaffold670 WUBlastX DNA_IS4EU 92439 92996 227 - . . scaffold670 TRF Tandem_Repeat 120644 120718 77 + . . scaffold670 TRF Tandem_Repeat 120648 120718 61 + . . scaffold670 WUBlastX LINE_Penelope 121641 121781 33 - . . scaffold670 WUBlastX DNA_hAT-Tip100 122778 123119 61 - . . scaffold670 WUBlastX DNA_hAT-Tip100 122832 123182 107 - . . scaffold670 WUBlastX DNA_hAT-Tip100 123443 124099 105 - . . scaffold670 WUBlastX DNA_hAT-Tip100 123740 124354 109 - . . scaffold670 GLEAN promoter 125176 126175 0.999932 + . ID=CGI_10007410; scaffold670 GLEAN mRNA 126176 136910 0.999932 + . ID=CGI_10007410; scaffold670 TRF Tandem_Repeat 129513 129546 61 + . . scaffold670 TRF Tandem_Repeat 131774 131810 74 + . . scaffold670 WUBlastX LINE_CR1-L2 134285 134710 70 + . . scaffold670 WUBlastX LINE_CR1-L2 134387 134704 94 + . . scaffold670 GLEAN promoter 136503 137502 1 + . ID=CGI_10007411; scaffold670 GLEAN mRNA 137503 141568 1 + . ID=CGI_10007411; scaffold670 TRF Tandem_Repeat 139982 140038 107 + . . scaffold670 TRF Tandem_Repeat 145088 145130 70 + . . scaffold670 GLEAN mRNA 159692 177079 0.840789 - . ID=CGI_10007412; scaffold670 GLEAN promoter 177080 178079 0.840789 - . ID=CGI_10007412; scaffold670 TRF Tandem_Repeat 179049 179102 99 + . . scaffold671 GLEAN mRNA 6316 7590 1 - . ID=CGI_10000715; scaffold671 GLEAN promoter 7591 8590 1 - . ID=CGI_10000715; scaffold672 GLEAN mRNA 1455 17003 0.927273 - . ID=CGI_10021021; scaffold672 TRF Tandem_Repeat 4840 4871 64 + . . scaffold672 TRF Tandem_Repeat 5936 6004 138 + . . scaffold672 WUBlastX DNA_IS4EU 9257 9379 36 + . . scaffold672 WUBlastX DNA_IS4EU 10159 10386 106 + . . scaffold672 WUBlastX LINE_RTE-BovB 15171 15458 88 + . . scaffold672 WUBlastX LINE_RTE-BovB 15243 15551 189 + . . scaffold672 GLEAN promoter 17004 18003 0.927273 - . ID=CGI_10021021; scaffold672 WUBlastX LINE_RTE-BovB 17025 17585 280 + . . scaffold672 WUBlastX DNA_TcMar-Tc2 18251 18436 36 + . . scaffold672 WUBlastX DNA_TcMar-Tc2 18586 18933 80 + . . scaffold672 WUBlastX DNA_TcMar-Fot1 18733 18987 53 + . . scaffold672 WUBlastX DNA_TcMar-Fot1 18989 19306 42 + . . scaffold672 WUBlastX DNA_TcMar-Tc2 19070 19486 109 + . . scaffold672 TRF Tandem_Repeat 30675 30714 80 + . . scaffold672 TRF Tandem_Repeat 30714 30761 96 + . . scaffold672 TRF Tandem_Repeat 34886 34923 76 + . . scaffold672 WUBlastX LINE_RTE-X 39210 39287 25 - . . scaffold672 WUBlastX LINE_RTE-X 39364 39495 34 - . . scaffold672 WUBlastX LINE_RTE-X 39464 39835 43 - . . scaffold672 WUBlastX LINE_RTE-X 39509 39823 92 - . . scaffold672 WUBlastX LINE_RTE-BovB 39572 39883 37 - . . scaffold672 TRF Tandem_Repeat 41530 41570 82 + . . scaffold672 GLEAN mRNA 43964 47921 1 - . ID=CGI_10021022; scaffold672 TRF Tandem_Repeat 46309 46347 78 + . . scaffold672 GLEAN promoter 47922 48921 1 - . ID=CGI_10021022; scaffold672 GLEAN mRNA 50696 53837 1 - . ID=CGI_10021023; scaffold672 GLEAN promoter 53838 54837 1 - . ID=CGI_10021023; scaffold672 TRF Tandem_Repeat 62683 62735 54 + . . scaffold672 TRF Tandem_Repeat 76127 76194 127 + . . scaffold672 TRF Tandem_Repeat 93330 93377 51 + . . scaffold672 WUBlastX LINE_L1-Tx1 106988 108307 178 - . . scaffold672 WUBlastX LINE_L1-Tx1 108345 110117 680 - . . scaffold672 GLEAN promoter 125321 126320 0.990434 + . ID=CGI_10021024; scaffold672 GLEAN mRNA 126321 133472 0.990434 + . ID=CGI_10021024; scaffold672 WUBlastX LINE_RTE-BovB 129733 130164 48 + . . scaffold672 WUBlastX DNA_MuDR 130455 132092 665 + . . scaffold672 WUBlastX LTR_Gypsy 137313 137708 298 + . . scaffold672 WUBlastX LTR_Gypsy 137322 137786 253 + . . scaffold672 WUBlastX LTR_Gypsy 141530 141904 41 + . . scaffold672 WUBlastX LTR_Gypsy 141641 141784 62 + . . scaffold672 WUBlastX LTR_Gypsy 141665 143146 1037 + . . scaffold672 WUBlastX LTR_Gypsy 143136 143192 22 + . . scaffold672 TRF Tandem_Repeat 143965 144663 709 + . . scaffold672 WUBlastX LINE_RTE-X 147617 148150 75 - . . scaffold672 WUBlastX LINE_RTE-X 147677 148117 107 - . . scaffold672 WUBlastX LINE_RTE-X 147779 148084 123 - . . scaffold672 WUBlastX LINE_L1 148187 149023 63 - . . scaffold672 WUBlastX LINE_L1 148325 148966 254 - . . scaffold672 WUBlastX LINE_L2 148361 149107 144 - . . scaffold672 WUBlastX LTR_Gypsy 154044 154304 42 + . . scaffold672 WUBlastX LTR_Gypsy 154092 154256 74 + . . scaffold672 WUBlastX LTR_Gypsy 154125 155621 1057 + . . scaffold672 TRF Tandem_Repeat 156269 156306 76 + . . scaffold672 GLEAN promoter 175101 176100 1 + . ID=CGI_10021025; scaffold672 GLEAN mRNA 176101 176654 1 + . ID=CGI_10021025; scaffold672 GLEAN promoter 177240 178239 0.995871 + . ID=CGI_10021026; scaffold672 GLEAN mRNA 178240 179580 0.995871 + . ID=CGI_10021026; scaffold672 GLEAN promoter 184206 185205 1 + . ID=CGI_10021027; scaffold672 GLEAN mRNA 185206 197456 1 + . ID=CGI_10021027; scaffold672 TRF Tandem_Repeat 186283 186324 84 + . . scaffold672 TRF Tandem_Repeat 186562 186619 100 + . . scaffold672 TRF Tandem_Repeat 186882 186924 86 + . . scaffold672 WUBlastX LINE_RTE-X 191632 192630 178 - . . scaffold672 WUBlastX LINE_RTE-X 191752 192597 547 - . . scaffold672 WUBlastX LINE_RTE-X 192397 192687 42 - . . scaffold672 TRF Tandem_Repeat 198263 198298 72 + . . scaffold672 GLEAN mRNA 199348 209427 0.995738 - . ID=CGI_10021028; scaffold672 GLEAN promoter 209428 210427 0.995738 - . ID=CGI_10021028; scaffold672 TRF Tandem_Repeat 210330 210376 94 + . . scaffold672 GLEAN mRNA 211784 213045 0.996164 - . ID=CGI_10021029; scaffold672 GLEAN promoter 213046 214045 0.996164 - . ID=CGI_10021029; scaffold672 TRF Tandem_Repeat 213968 214003 72 + . . scaffold672 TRF Tandem_Repeat 216099 216133 70 + . . scaffold672 GLEAN mRNA 218410 236780 0.999407 - . ID=CGI_10021030; scaffold672 TRF Tandem_Repeat 231758 231820 94 + . . scaffold672 GLEAN promoter 236781 237780 0.999407 - . ID=CGI_10021030; scaffold672 GLEAN promoter 240795 241794 1 + . ID=CGI_10021031; scaffold672 GLEAN mRNA 241795 244744 1 + . ID=CGI_10021031; scaffold672 TRF Tandem_Repeat 250042 250294 147 + . . scaffold672 TRF Tandem_Repeat 250130 250294 170 + . . scaffold672 WUBlastX LINE_RTE-X 256214 256456 71 + . . scaffold672 WUBlastX LINE_RTE-X 256358 256624 31 + . . scaffold672 TRF Tandem_Repeat 256929 257010 164 + . . scaffold672 TRF Tandem_Repeat 257569 257627 118 + . . scaffold672 WUBlastX LINE_L2 258756 258998 28 + . . scaffold672 WUBlastX LINE_L2 258807 258998 29 + . . scaffold672 WUBlastX LINE_L2 258882 258998 41 + . . scaffold672 WUBlastX LINE_L2 259048 259191 44 + . . scaffold672 TRF Tandem_Repeat 260817 260854 67 + . . scaffold672 TRF Tandem_Repeat 261055 261977 1408 + . . scaffold672 GLEAN mRNA 282477 283172 0.481825 - . ID=CGI_10021032; scaffold672 GLEAN promoter 283173 284172 0.481825 - . ID=CGI_10021032; scaffold672 GLEAN mRNA 284838 299354 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 286238 286328 96 + . . scaffold672 TRF Tandem_Repeat 290024 291416 1555 + . . scaffold672 TRF Tandem_Repeat 296168 297224 872 + . . scaffold672 TRF Tandem_Repeat 296168 297217 840 + . . scaffold672 TRF Tandem_Repeat 296168 296382 292 + . . scaffold672 TRF Tandem_Repeat 296377 296936 652 + . . scaffold672 TRF Tandem_Repeat 297078 297224 213 + . . scaffold672 GLEAN promoter 299355 300354 0.887685 - . ID=CGI_10021033; scaffold672 TRF Tandem_Repeat 303349 303374 52 + . . scaffold672 TRF Tandem_Repeat 303626 303672 94 + . . scaffold672 TRF Tandem_Repeat 303699 303747 98 + . . scaffold672 GLEAN promoter 304472 305471 0.672862 + . ID=CGI_10021034; scaffold672 GLEAN mRNA 305472 308325 0.672862 + . ID=CGI_10021034; scaffold672 GLEAN promoter 307747 308746 0.669959 + . ID=CGI_10021035; scaffold672 GLEAN mRNA 308747 310991 0.669959 + . ID=CGI_10021035; scaffold672 GLEAN promoter 331904 332903 0.99935 + . ID=CGI_10021036; scaffold672 GLEAN mRNA 332904 342025 0.99935 + . ID=CGI_10021036; scaffold672 TRF Tandem_Repeat 336328 336990 1155 + . . scaffold672 GLEAN promoter 343428 344427 0.374241 + . ID=CGI_10021037; scaffold672 GLEAN mRNA 344428 366665 0.374241 + . ID=CGI_10021037; scaffold672 TRF Tandem_Repeat 345387 345432 83 + . . scaffold672 TRF Tandem_Repeat 345918 345954 65 + . . scaffold672 GLEAN promoter 366285 367284 0.992516 + . ID=CGI_10021038; scaffold672 GLEAN mRNA 367285 368004 0.992516 + . ID=CGI_10021038; scaffold672 TRF Tandem_Repeat 372212 372251 80 + . . scaffold672 TRF Tandem_Repeat 384429 384815 356 + . . scaffold672 TRF Tandem_Repeat 384645 384801 108 + . . scaffold672 GLEAN promoter 406033 407032 0.999593 + . ID=CGI_10021039; scaffold672 GLEAN mRNA 407033 414646 0.999593 + . ID=CGI_10021039; scaffold672 GLEAN promoter 423678 424677 0.759305 + . ID=CGI_10021040; scaffold672 GLEAN mRNA 424678 425649 0.759305 + . ID=CGI_10021040; scaffold672 GLEAN mRNA 429192 430364 0.999999 - . ID=CGI_10021041; scaffold672 WUBlastX LINE_L2 429198 431732 1382 - . . scaffold672 WUBlastX LINE_I 429552 432191 68 - . . scaffold672 GLEAN promoter 430365 431364 0.999999 - . ID=CGI_10021041; scaffold672 GLEAN mRNA 436034 438994 1 - . ID=CGI_10021042; scaffold672 GLEAN promoter 438995 439994 1 - . ID=CGI_10021042; scaffold672 GLEAN mRNA 441101 443317 0.965913 - . ID=CGI_10021043; scaffold672 GLEAN promoter 443318 444317 0.965913 - . ID=CGI_10021043; scaffold672 TRF Tandem_Repeat 445870 445936 53 + . . scaffold672 TRF Tandem_Repeat 445873 445929 60 + . . scaffold672 GLEAN mRNA 446407 465112 0.997217 - . ID=CGI_10021044; scaffold672 TRF Tandem_Repeat 451861 451899 78 + . . scaffold672 GLEAN promoter 456922 457921 0.999982 + . ID=CGI_10021045; scaffold672 GLEAN mRNA 457922 460027 0.999982 + . ID=CGI_10021045; scaffold672 GLEAN promoter 465113 466112 0.997217 - . ID=CGI_10021044; scaffold672 GLEAN mRNA 469297 479958 0.94275 - . ID=CGI_10021046; scaffold672 TRF Tandem_Repeat 478594 478662 120 + . . scaffold672 GLEAN promoter 479959 480958 0.94275 - . ID=CGI_10021046; scaffold672 GLEAN promoter 512669 513668 0.672113 + . ID=CGI_10021047; scaffold672 GLEAN mRNA 513669 513992 0.672113 + . ID=CGI_10021047; scaffold672 GLEAN promoter 518854 519853 0.8069 + . ID=CGI_10021048; scaffold672 GLEAN mRNA 519854 523209 0.8069 + . ID=CGI_10021048; scaffold672 TRF Tandem_Repeat 528781 528839 55 + . . scaffold672 GLEAN promoter 531186 532185 0.733454 + . ID=CGI_10021049; scaffold672 GLEAN promoter 531629 532628 0.948124 + . ID=CGI_10021050; scaffold672 GLEAN mRNA 532186 532512 0.733454 + . ID=CGI_10021049; scaffold672 GLEAN mRNA 532629 549082 0.948124 + . ID=CGI_10021050; scaffold672 TRF Tandem_Repeat 537465 537499 70 + . . scaffold672 GLEAN promoter 548249 549248 0.486627 + . ID=CGI_10021051; scaffold672 GLEAN mRNA 549249 549629 0.486627 + . ID=CGI_10021051; scaffold672 GLEAN promoter 553500 554499 1 + . ID=CGI_10021052; scaffold672 GLEAN mRNA 554500 555047 1 + . ID=CGI_10021052; scaffold672 WUBlastX DNA_TcMar-Tc1 560176 560340 22 + . . scaffold672 WUBlastX DNA_TcMar-Tc1 560295 560948 221 + . . scaffold672 WUBlastX DNA_TcMar-Tc1 560939 561199 139 + . . scaffold672 TRF Tandem_Repeat 572015 572068 101 + . . scaffold672 GLEAN mRNA 572934 618688 0.661903 - . ID=CGI_10021053; scaffold672 TRF Tandem_Repeat 575034 575137 86 + . . scaffold672 TRF Tandem_Repeat 587428 587473 51 + . . scaffold672 GLEAN promoter 618689 619688 0.661903 - . ID=CGI_10021053; scaffold672 TRF Tandem_Repeat 626133 626186 108 + . . scaffold672 GLEAN promoter 629921 630920 1 + . ID=CGI_10021054; scaffold672 GLEAN mRNA 630921 632059 1 + . ID=CGI_10021054; scaffold672 GLEAN mRNA 640658 642373 0.629162 - . ID=CGI_10021055; scaffold672 WUBlastX LINE_RTE-X 641471 642130 29 - . . scaffold672 GLEAN promoter 642374 643373 0.629162 - . ID=CGI_10021055; scaffold672 GLEAN promoter 645657 646656 1 + . ID=CGI_10021056; scaffold672 GLEAN mRNA 646657 648905 1 + . ID=CGI_10021056; scaffold672 GLEAN promoter 654213 655212 0.995402 + . ID=CGI_10021057; scaffold672 GLEAN mRNA 655213 657747 0.995402 + . ID=CGI_10021057; scaffold672 GLEAN mRNA 662573 663970 0.593389 - . ID=CGI_10021058; scaffold672 GLEAN promoter 663971 664970 0.593389 - . ID=CGI_10021058; scaffold672 TRF Tandem_Repeat 665674 665716 86 + . . scaffold672 WUBlastX LINE_CR1-L2 668426 668623 71 - . . scaffold673 GLEAN mRNA 18053 18539 0.544962 - . ID=CGI_10004913; scaffold673 GLEAN promoter 18540 19539 0.544962 - . ID=CGI_10004913; scaffold673 GLEAN promoter 39798 40797 0.999937 + . ID=CGI_10004914; scaffold673 GLEAN mRNA 40798 48262 0.999937 + . ID=CGI_10004914; scaffold673 GLEAN promoter 68199 69198 0.999934 + . ID=CGI_10004915; scaffold673 GLEAN mRNA 69199 82644 0.999934 + . ID=CGI_10004915; scaffold673 GLEAN promoter 83607 84606 1 + . ID=CGI_10004916; scaffold673 GLEAN mRNA 84607 87082 1 + . ID=CGI_10004916; scaffold673 GLEAN mRNA 89379 105348 0.308111 - . ID=CGI_10004917; scaffold673 GLEAN promoter 105349 106348 0.308111 - . ID=CGI_10004917; scaffold673 GLEAN mRNA 106913 107836 0.999999 - . ID=CGI_10004918; scaffold673 GLEAN promoter 107837 108836 0.999999 - . ID=CGI_10004918; scaffold674 GLEAN promoter 10758 11757 0.993811 + . ID=CGI_10002488; scaffold674 GLEAN mRNA 11758 15607 0.993811 + . ID=CGI_10002488; scaffold674 WUBlastX LTR_Ngaro 12160 12567 182 + . . scaffold674 WUBlastX LTR_Ngaro 12166 12651 170 + . . scaffold674 WUBlastX LTR_Ngaro 12178 12813 69 + . . scaffold674 WUBlastX LTR_Ngaro 12937 14466 678 + . . scaffold674 WUBlastX LTR_Ngaro 14475 15158 206 + . . scaffold674 WUBlastX LTR_Ngaro 15145 15366 120 + . . scaffold674 TRF Tandem_Repeat 42155 42206 104 + . . scaffold675 TRF Tandem_Repeat 1919 1980 124 + . . scaffold675 GLEAN mRNA 2221 2406 0.6496 - . ID=CGI_10017851; scaffold675 GLEAN promoter 2407 3406 0.6496 - . ID=CGI_10017851; scaffold675 GLEAN promoter 4272 5271 0.615405 + . ID=CGI_10017852; scaffold675 TRF Tandem_Repeat 4686 4724 78 + . . scaffold675 GLEAN mRNA 5272 10088 0.615405 + . ID=CGI_10017852; scaffold675 TRF Tandem_Repeat 6673 6716 54 + . . scaffold675 TRF Tandem_Repeat 8971 9007 74 + . . scaffold675 WUBlastX LINE_CR1 10568 11017 119 - . . scaffold675 WUBlastX LINE_L1-Tx1 10607 11239 79 - . . scaffold675 WUBlastX DNA_TcMar-Marin 15733 15966 111 - . . scaffold675 WUBlastX DNA_TcMar-Marin 16013 16156 22 - . . scaffold675 WUBlastX DNA_TcMar-Marin 16091 16246 30 - . . scaffold675 TRF Tandem_Repeat 25472 25508 74 + . . scaffold675 TRF Tandem_Repeat 27195 27258 114 + . . scaffold675 TRF Tandem_Repeat 27745 27838 127 + . . scaffold675 TRF Tandem_Repeat 27746 27838 96 + . . scaffold675 WUBlastX DNA_Maverick 28659 29183 277 - . . scaffold675 WUBlastX DNA_Maverick 28665 29426 258 - . . scaffold675 WUBlastX DNA_Maverick 28665 29588 230 - . . scaffold675 WUBlastX DNA_Maverick 29567 29914 225 - . . scaffold675 GLEAN promoter 30773 31772 0.967666 + . ID=CGI_10017853; scaffold675 TRF Tandem_Repeat 31448 31495 96 + . . scaffold675 GLEAN mRNA 31773 43636 0.967666 + . ID=CGI_10017853; scaffold675 TRF Tandem_Repeat 38272 38379 216 + . . scaffold675 WUBlastX LINE_Penelope 45583 45726 20 + . . scaffold675 WUBlastX LINE_Penelope 45614 46225 33 + . . scaffold675 WUBlastX LINE_Penelope 45710 46243 97 + . . scaffold675 TRF Tandem_Repeat 50278 51179 1203 + . . scaffold675 TRF Tandem_Repeat 60015 60048 59 + . . scaffold675 TRF Tandem_Repeat 62855 62907 63 + . . scaffold675 TRF Tandem_Repeat 64941 65010 140 + . . scaffold675 TRF Tandem_Repeat 66031 66057 54 + . . scaffold675 WUBlastX LINE_RTE-RTE 66819 67364 66 - . . scaffold675 WUBlastX LINE_RTE-X 67854 68003 29 - . . scaffold675 WUBlastX LINE_L2 67881 68033 30 - . . scaffold675 WUBlastX LINE_I-Nimb 67920 68024 36 - . . scaffold675 WUBlastX LINE_CR1 67941 68012 41 - . . scaffold675 WUBlastX LINE_CR1 67941 68027 36 - . . scaffold675 WUBlastX LINE_Jockey 68041 68187 64 - . . scaffold675 WUBlastX LINE_Jockey 68113 68277 45 - . . scaffold675 WUBlastX DNA_PiggyBac 71644 71931 59 + . . scaffold675 WUBlastX DNA_PiggyBac 71668 71901 81 + . . scaffold675 TRF Tandem_Repeat 76795 76852 64 + . . scaffold675 TRF Tandem_Repeat 87589 87642 74 + . . scaffold675 TRF Tandem_Repeat 89067 89989 1042 + . . scaffold675 GLEAN promoter 92924 93923 0.998971 + . ID=CGI_10017854; scaffold675 GLEAN mRNA 93924 100006 0.998971 + . ID=CGI_10017854; scaffold675 GLEAN promoter 103061 104060 0.999949 + . ID=CGI_10017855; scaffold675 GLEAN mRNA 104061 109685 0.999949 + . ID=CGI_10017855; scaffold675 GLEAN mRNA 109657 116904 0.999611 - . ID=CGI_10017856; scaffold675 TRF Tandem_Repeat 110863 111496 416 + . . scaffold675 TRF Tandem_Repeat 110914 111753 757 + . . scaffold675 TRF Tandem_Repeat 111117 111753 804 + . . scaffold675 TRF Tandem_Repeat 111117 111753 829 + . . scaffold675 WUBlastX DNA_TcMar-Marin 115319 115567 62 - . . scaffold675 WUBlastX DNA_TcMar-Marin 115406 115804 80 - . . scaffold675 WUBlastX DNA_TcMar-Marin 115809 115958 42 - . . scaffold675 WUBlastX DNA_TcMar-Marin 115942 116193 46 - . . scaffold675 GLEAN promoter 116905 117904 0.999611 - . ID=CGI_10017856; scaffold675 TRF Tandem_Repeat 117105 118001 1440 + . . scaffold675 TRF Tandem_Repeat 123495 123542 96 + . . scaffold675 GLEAN promoter 126230 127229 0.666998 + . ID=CGI_10017857; scaffold675 TRF Tandem_Repeat 126987 127204 355 + . . scaffold675 GLEAN mRNA 127230 137231 0.666998 + . ID=CGI_10017857; scaffold675 TRF Tandem_Repeat 129373 129405 66 + . . scaffold675 TRF Tandem_Repeat 132542 132583 50 + . . scaffold675 TRF Tandem_Repeat 134553 136278 2296 + . . scaffold675 TRF Tandem_Repeat 134553 136260 2200 + . . scaffold675 GLEAN mRNA 142317 153336 0.92732 - . ID=CGI_10017858; scaffold675 GLEAN promoter 153337 154336 0.92732 - . ID=CGI_10017858; scaffold675 TRF Tandem_Repeat 155055 155941 1126 + . . scaffold675 GLEAN mRNA 159550 164631 1 - . ID=CGI_10017859; scaffold675 GLEAN promoter 164632 165631 1 - . ID=CGI_10017859; scaffold675 GLEAN promoter 164700 165699 0.999283 + . ID=CGI_10017860; scaffold675 GLEAN mRNA 165700 174222 0.999283 + . ID=CGI_10017860; scaffold675 TRF Tandem_Repeat 171247 171285 51 + . . scaffold675 TRF Tandem_Repeat 176382 176519 71 + . . scaffold675 TRF Tandem_Repeat 176425 176516 77 + . . scaffold675 WUBlastX LTR_Gypsy 182465 182512 27 - . . scaffold675 WUBlastX LTR_Gypsy 182504 183565 635 - . . scaffold675 WUBlastX LTR_Gypsy 183071 183670 222 - . . scaffold675 GLEAN promoter 183413 184412 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 183854 183883 51 + . . scaffold675 WUBlastX LTR_Gypsy 183938 184015 23 - . . scaffold675 GLEAN mRNA 184413 210696 0.999886 + . ID=CGI_10017861; scaffold675 TRF Tandem_Repeat 192850 193103 395 + . . scaffold675 TRF Tandem_Repeat 193827 194411 369 + . . scaffold675 TRF Tandem_Repeat 193829 193979 90 + . . scaffold675 TRF Tandem_Repeat 193831 194443 593 + . . scaffold675 TRF Tandem_Repeat 193853 194443 143 + . . scaffold675 TRF Tandem_Repeat 193934 194294 252 + . . scaffold675 TRF Tandem_Repeat 194317 194436 83 + . . scaffold675 TRF Tandem_Repeat 197027 197370 431 + . . scaffold675 TRF Tandem_Repeat 198384 198702 251 + . . scaffold675 TRF Tandem_Repeat 198384 198712 380 + . . scaffold675 TRF Tandem_Repeat 202195 202254 120 + . . scaffold675 TRF Tandem_Repeat 203097 203713 787 + . . scaffold675 TRF Tandem_Repeat 208043 208228 342 + . . scaffold675 GLEAN promoter 214174 215173 0.996437 + . ID=CGI_10017862; scaffold675 GLEAN mRNA 215174 226384 0.996437 + . ID=CGI_10017862; scaffold675 TRF Tandem_Repeat 217610 218083 208 + . . scaffold675 TRF Tandem_Repeat 218297 218474 284 + . . scaffold675 TRF Tandem_Repeat 219863 219978 118 + . . scaffold675 TRF Tandem_Repeat 219863 219969 105 + . . scaffold675 TRF Tandem_Repeat 219899 219978 82 + . . scaffold675 TRF Tandem_Repeat 226495 226528 68 + . . scaffold675 TRF Tandem_Repeat 229233 229331 99 + . . scaffold675 TRF Tandem_Repeat 230146 230808 903 + . . scaffold675 TRF Tandem_Repeat 232697 232813 92 + . . scaffold675 GLEAN mRNA 232857 253280 0.999994 - . ID=CGI_10017863; scaffold675 GLEAN promoter 252732 253731 0.996256 + . ID=CGI_10017864; scaffold675 GLEAN promoter 253281 254280 0.999994 - . ID=CGI_10017863; scaffold675 GLEAN mRNA 253732 271119 0.996256 + . ID=CGI_10017864; scaffold675 TRF Tandem_Repeat 261367 262721 2112 + . . scaffold675 TRF Tandem_Repeat 267527 270020 3308 + . . scaffold675 GLEAN mRNA 274486 277085 1 - . ID=CGI_10017865; scaffold675 GLEAN promoter 277086 278085 1 - . ID=CGI_10017865; scaffold675 TRF Tandem_Repeat 283118 283145 56 + . . scaffold675 GLEAN mRNA 298519 308407 0.999954 - . ID=CGI_10017866; scaffold675 TRF Tandem_Repeat 306131 306169 78 + . . scaffold675 GLEAN promoter 308408 309407 0.999954 - . ID=CGI_10017866; scaffold675 TRF Tandem_Repeat 313185 313222 51 + . . scaffold675 TRF Tandem_Repeat 313447 313472 52 + . . scaffold675 TRF Tandem_Repeat 313673 313795 210 + . . scaffold675 GLEAN mRNA 314405 319228 1 - . ID=CGI_10017867; scaffold675 GLEAN promoter 319229 320228 1 - . ID=CGI_10017867; scaffold675 GLEAN promoter 319322 320321 0.999676 + . ID=CGI_10017868; scaffold675 GLEAN mRNA 320322 328958 0.999676 + . ID=CGI_10017868; scaffold675 TRF Tandem_Repeat 320938 320968 62 + . . scaffold675 TRF Tandem_Repeat 333195 333246 104 + . . scaffold675 GLEAN promoter 336968 337967 0.550311 + . ID=CGI_10017869; scaffold675 GLEAN mRNA 337968 354059 0.550311 + . ID=CGI_10017869; scaffold675 TRF Tandem_Repeat 338332 338424 168 + . . scaffold675 TRF Tandem_Repeat 338446 338484 78 + . . scaffold675 TRF Tandem_Repeat 339441 340249 498 + . . scaffold675 TRF Tandem_Repeat 339514 340244 812 + . . scaffold675 TRF Tandem_Repeat 339516 340244 648 + . . scaffold675 TRF Tandem_Repeat 351604 351651 78 + . . scaffold675 TRF Tandem_Repeat 351609 351658 64 + . . scaffold675 TRF Tandem_Repeat 351682 352642 1439 + . . scaffold675 GLEAN mRNA 365523 365957 1 - . ID=CGI_10017870; scaffold675 GLEAN promoter 365958 366957 1 - . ID=CGI_10017870; scaffold675 TRF Tandem_Repeat 368530 368586 114 + . . scaffold675 GLEAN mRNA 370213 387702 0.777737 - . ID=CGI_10017871; scaffold675 TRF Tandem_Repeat 371751 371866 130 + . . scaffold675 TRF Tandem_Repeat 371751 371866 171 + . . scaffold675 TRF Tandem_Repeat 378118 378153 72 + . . scaffold675 TRF Tandem_Repeat 379062 379377 362 + . . scaffold675 GLEAN promoter 387703 388702 0.777737 - . ID=CGI_10017871; scaffold675 TRF Tandem_Repeat 394896 394946 68 + . . scaffold675 TRF Tandem_Repeat 395118 396146 1378 + . . scaffold675 TRF Tandem_Repeat 403671 403715 90 + . . scaffold675 TRF Tandem_Repeat 410115 410259 182 + . . scaffold675 TRF Tandem_Repeat 415505 415550 92 + . . scaffold675 TRF Tandem_Repeat 420931 420982 104 + . . scaffold675 GLEAN mRNA 432099 436457 0.999949 - . ID=CGI_10017872; scaffold675 GLEAN promoter 436458 437457 0.999949 - . ID=CGI_10017872; scaffold675 GLEAN mRNA 447428 489134 0.413814 - . ID=CGI_10017873; scaffold675 TRF Tandem_Repeat 465806 465854 98 + . . scaffold675 TRF Tandem_Repeat 486595 486672 147 + . . scaffold675 GLEAN promoter 489135 490134 0.413814 - . ID=CGI_10017873; scaffold675 GLEAN mRNA 491753 498470 1 - . ID=CGI_10017874; scaffold675 GLEAN promoter 498471 499470 1 - . ID=CGI_10017874; scaffold675 GLEAN mRNA 501242 521768 0.912888 - . ID=CGI_10017875; scaffold675 TRF Tandem_Repeat 508709 508745 67 + . . scaffold675 GLEAN promoter 521769 522768 0.912888 - . ID=CGI_10017875; scaffold676 TRF Tandem_Repeat 11256 11319 128 + . . scaffold676 GLEAN promoter 36733 37732 0.378713 + . ID=CGI_10021414; scaffold676 GLEAN mRNA 37733 47078 0.378713 + . ID=CGI_10021414; scaffold676 TRF Tandem_Repeat 45020 46176 940 + . . scaffold676 TRF Tandem_Repeat 46692 46737 92 + . . scaffold676 TRF Tandem_Repeat 51111 51862 1039 + . . scaffold676 TRF Tandem_Repeat 53286 53343 100 + . . scaffold676 TRF Tandem_Repeat 53289 53342 65 + . . scaffold676 TRF Tandem_Repeat 59926 59959 52 + . . scaffold676 TRF Tandem_Repeat 79516 79568 106 + . . scaffold676 GLEAN mRNA 85947 86950 0.99973 - . ID=CGI_10021415; scaffold676 GLEAN promoter 86951 87950 0.99973 - . ID=CGI_10021415; scaffold676 TRF Tandem_Repeat 93528 93565 76 + . . scaffold676 TRF Tandem_Repeat 96116 96186 142 + . . scaffold676 GLEAN promoter 118557 119556 0.997946 + . ID=CGI_10021417; scaffold676 GLEAN mRNA 119093 119362 0.618186 - . ID=CGI_10021416; scaffold676 GLEAN promoter 119363 120362 0.618186 - . ID=CGI_10021416; scaffold676 GLEAN mRNA 119557 129380 0.997946 + . ID=CGI_10021417; scaffold676 TRF Tandem_Repeat 121113 121183 142 + . . scaffold676 TRF Tandem_Repeat 130170 130201 55 + . . scaffold676 GLEAN mRNA 132226 144483 0.996279 - . ID=CGI_10021418; scaffold676 TRF Tandem_Repeat 132317 132367 81 + . . scaffold676 TRF Tandem_Repeat 132319 132363 74 + . . scaffold676 TRF Tandem_Repeat 139318 139403 172 + . . scaffold676 GLEAN promoter 144484 145483 0.996279 - . ID=CGI_10021418; scaffold676 TRF Tandem_Repeat 149017 149041 50 + . . scaffold676 TRF Tandem_Repeat 149042 149097 112 + . . scaffold676 TRF Tandem_Repeat 149095 149125 53 + . . scaffold676 GLEAN mRNA 155160 173044 0.999675 - . ID=CGI_10021419; scaffold676 TRF Tandem_Repeat 158315 159325 1473 + . . scaffold676 TRF Tandem_Repeat 164884 164941 100 + . . scaffold676 TRF Tandem_Repeat 169656 169699 88 + . . scaffold676 TRF Tandem_Repeat 171084 171129 92 + . . scaffold676 GLEAN promoter 173045 174044 0.999675 - . ID=CGI_10021419; scaffold676 TRF Tandem_Repeat 174028 174076 98 + . . scaffold676 GLEAN mRNA 174135 178534 0.999307 - . ID=CGI_10021420; scaffold676 TRF Tandem_Repeat 176631 176671 73 + . . scaffold676 TRF Tandem_Repeat 177769 177820 104 + . . scaffold676 GLEAN promoter 178535 179534 0.999307 - . ID=CGI_10021420; scaffold676 WUBlastX DNA_IS 181445 182230 1290 + . . scaffold676 GLEAN promoter 200954 201953 0.999411 + . ID=CGI_10021421; scaffold676 GLEAN mRNA 201954 214545 0.999411 + . ID=CGI_10021421; scaffold676 GLEAN promoter 216726 217725 0.999676 + . ID=CGI_10021422; scaffold676 GLEAN mRNA 217726 222481 0.999676 + . ID=CGI_10021422; scaffold676 GLEAN mRNA 227203 228072 0.995273 - . ID=CGI_10021423; scaffold676 GLEAN promoter 228073 229072 0.995273 - . ID=CGI_10021423; scaffold676 TRF Tandem_Repeat 231785 231829 90 + . . scaffold676 TRF Tandem_Repeat 233685 233730 92 + . . scaffold676 GLEAN promoter 248331 249330 0.999129 + . ID=CGI_10021424; scaffold676 GLEAN mRNA 249331 262799 0.999129 + . ID=CGI_10021424; scaffold676 TRF Tandem_Repeat 253846 253891 92 + . . scaffold676 TRF Tandem_Repeat 278894 279181 86 + . . scaffold676 WUBlastX LINE_L1-Tx1 279853 280362 52 + . . scaffold676 WUBlastX LINE_L1-Tx1 280382 280612 23 + . . scaffold676 TRF Tandem_Repeat 286298 286341 61 + . . scaffold676 TRF Tandem_Repeat 287154 287632 354 + . . scaffold676 TRF Tandem_Repeat 287271 287632 354 + . . scaffold676 TRF Tandem_Repeat 287274 287638 336 + . . scaffold676 TRF Tandem_Repeat 289186 289226 75 + . . scaffold676 TRF Tandem_Repeat 296026 296143 93 + . . scaffold676 TRF Tandem_Repeat 298628 298724 108 + . . scaffold676 WUBlastX LTR_Ngaro 299038 299412 123 - . . scaffold676 WUBlastX LTR_Ngaro 299420 299752 91 - . . scaffold676 WUBlastX LTR_Ngaro 299773 300087 143 - . . scaffold676 WUBlastX LTR_Ngaro 300089 300463 191 - . . scaffold676 WUBlastX LTR_Ngaro 300508 300810 199 - . . scaffold676 WUBlastX LTR_Ngaro 300807 301094 191 - . . scaffold676 TRF Tandem_Repeat 301138 301181 52 + . . scaffold676 WUBlastX LTR_Ngaro 302186 302356 60 - . . scaffold676 TRF Tandem_Repeat 303018 303061 52 + . . scaffold676 WUBlastX LTR_Gypsy 303586 303681 21 + . . scaffold676 WUBlastX DNA_TcMar-Tc1 303684 304319 219 - . . scaffold676 WUBlastX DNA_TcMar-Tc1 303936 304391 112 - . . scaffold676 WUBlastX DNA_TcMar-Tc1 304328 304582 22 - . . scaffold676 WUBlastX LTR_Gypsy 304435 304872 87 + . . scaffold676 WUBlastX LTR_Gypsy 304543 304872 163 + . . scaffold676 WUBlastX LTR_Gypsy 304594 306747 1074 + . . scaffold676 WUBlastX LTR_Gypsy 306743 306958 37 + . . scaffold676 WUBlastX LTR_Copia 307041 307376 28 + . . scaffold676 WUBlastX LTR_Copia 307125 307388 29 + . . scaffold676 WUBlastX LTR_Copia 307278 307436 20 + . . scaffold676 TRF Tandem_Repeat 314101 314139 78 + . . scaffold676 TRF Tandem_Repeat 314680 314738 118 + . . scaffold676 WUBlastX DNA_Harbinger 343436 344365 70 - . . scaffold676 WUBlastX DNA_Harbinger 343613 344362 101 - . . scaffold676 TRF Tandem_Repeat 344836 344920 134 + . . scaffold676 TRF Tandem_Repeat 346483 346542 75 + . . scaffold676 WUBlastX DNA_Crypton 352350 352730 96 + . . scaffold676 TRF Tandem_Repeat 353133 353186 83 + . . scaffold676 WUBlastX DNA_Crypton 353408 353884 79 + . . scaffold676 TRF Tandem_Repeat 357891 358054 186 + . . scaffold676 TRF Tandem_Repeat 358341 358366 52 + . . scaffold676 TRF Tandem_Repeat 364286 364323 76 + . . scaffold676 TRF Tandem_Repeat 390016 390058 77 + . . scaffold676 WUBlastX DNA_TcMar-Tc1 398471 398638 47 + . . scaffold676 WUBlastX DNA_TcMar-Tc1 398659 398919 117 + . . scaffold676 TRF Tandem_Repeat 401819 401852 59 + . . scaffold676 GLEAN promoter 426167 427166 0.984027 + . ID=CGI_10021426; scaffold676 GLEAN mRNA 427167 428131 0.984027 + . ID=CGI_10021426; scaffold676 WUBlastX RC_Helitron 427392 427742 56 + . . scaffold676 TRF Tandem_Repeat 429075 429121 94 + . . scaffold676 TRF Tandem_Repeat 438714 438769 103 + . . scaffold676 GLEAN mRNA 439325 439498 0.540211 - . ID=CGI_10021427; scaffold676 GLEAN promoter 439499 440498 0.540211 - . ID=CGI_10021427; scaffold676 TRF Tandem_Repeat 439596 439752 79 + . . scaffold676 GLEAN mRNA 448752 466691 0.39659 - . ID=CGI_10021428; scaffold676 TRF Tandem_Repeat 451088 451147 78 + . . scaffold676 GLEAN promoter 466692 467691 0.39659 - . ID=CGI_10021428; scaffold676 TRF Tandem_Repeat 474362 474412 102 + . . scaffold676 GLEAN promoter 476291 477290 0.841203 + . ID=CGI_10021429; scaffold676 GLEAN mRNA 477291 491629 0.841203 + . ID=CGI_10021429; scaffold676 TRF Tandem_Repeat 490867 491106 257 + . . scaffold676 TRF Tandem_Repeat 498813 499093 184 + . . scaffold676 TRF Tandem_Repeat 500467 500603 76 + . . scaffold676 TRF Tandem_Repeat 500475 500673 193 + . . scaffold676 TRF Tandem_Repeat 500484 500673 127 + . . scaffold676 TRF Tandem_Repeat 500487 500673 87 + . . scaffold676 GLEAN mRNA 503082 508241 0.725151 - . ID=CGI_10021430; scaffold676 GLEAN promoter 508242 509241 0.725151 - . ID=CGI_10021430; scaffold676 TRF Tandem_Repeat 508831 508902 63 + . . scaffold676 TRF Tandem_Repeat 520777 521025 103 + . . scaffold676 TRF Tandem_Repeat 529348 529471 54 + . . scaffold676 TRF Tandem_Repeat 529348 529453 77 + . . scaffold676 WUBlastX LTR_Ngaro 541747 542010 74 - . . scaffold676 GLEAN promoter 554317 555316 0.999808 + . ID=CGI_10021431; scaffold676 GLEAN mRNA 555317 555762 0.999808 + . ID=CGI_10021431; scaffold676 GLEAN promoter 559023 560022 0.378138 + . ID=CGI_10021432; scaffold676 GLEAN mRNA 560023 599101 0.378138 + . ID=CGI_10021432; scaffold676 TRF Tandem_Repeat 560282 560385 199 + . . scaffold676 TRF Tandem_Repeat 568457 568719 229 + . . scaffold676 WUBlastX LINE_RTE-X 576166 576435 38 - . . scaffold676 WUBlastX LINE_RTE-X 576220 576435 38 - . . scaffold676 WUBlastX LINE_RTE-X 576298 576432 69 - . . scaffold676 WUBlastX LINE_RTE-X 576298 576459 64 - . . scaffold676 WUBlastX LINE_RTE-X 576644 576913 28 - . . scaffold676 WUBlastX LINE_RTE-X 576707 577021 66 - . . scaffold676 WUBlastX LINE_RTE-X 576773 577015 75 - . . scaffold676 WUBlastX LINE_RTE-BovB 576812 577003 91 - . . scaffold676 WUBlastX LINE_RTE-X 577030 577305 148 - . . scaffold676 TRF Tandem_Repeat 591714 591806 105 + . . scaffold676 TRF Tandem_Repeat 594357 594449 80 + . . scaffold676 TRF Tandem_Repeat 594361 594452 58 + . . scaffold676 WUBlastX LTR_Copia 599244 599672 21 + . . scaffold676 WUBlastX LINE_L1 599310 600080 55 + . . scaffold676 WUBlastX LINE_L2 599427 600074 144 + . . scaffold676 WUBlastX LINE_L1-Tx1 600539 600754 141 + . . scaffold676 WUBlastX LTR_Ngaro 602440 602637 32 + . . scaffold676 WUBlastX LTR_Ngaro 602524 602679 31 + . . scaffold676 TRF Tandem_Repeat 608100 608191 89 + . . scaffold676 TRF Tandem_Repeat 608268 608406 136 + . . scaffold676 TRF Tandem_Repeat 608458 608594 116 + . . scaffold676 TRF Tandem_Repeat 608676 608769 82 + . . scaffold676 TRF Tandem_Repeat 616747 616844 101 + . . scaffold676 TRF Tandem_Repeat 625360 625410 95 + . . scaffold676 TRF Tandem_Repeat 629806 629848 86 + . . scaffold676 TRF Tandem_Repeat 637584 637653 122 + . . scaffold676 TRF Tandem_Repeat 638097 638135 78 + . . scaffold676 TRF Tandem_Repeat 644568 644708 138 + . . scaffold676 TRF Tandem_Repeat 645271 645298 56 + . . scaffold676 WUBlastX LINE_RTE-X 647330 647611 31 - . . scaffold676 WUBlastX LINE_RTE-X 647420 647626 52 - . . scaffold676 WUBlastX LINE_RTE-X 647465 648718 185 - . . scaffold676 WUBlastX LINE_RTE-X 648173 648724 231 - . . scaffold676 WUBlastX LINE_RTE-X 648739 649122 49 - . . scaffold676 WUBlastX LINE_RTE-X 648739 648981 123 - . . scaffold676 WUBlastX LINE_RTE-X 648739 649026 79 - . . scaffold676 WUBlastX LTR_Pao 658638 660815 1686 - . . scaffold676 WUBlastX LTR_Pao 660829 661419 451 - . . scaffold676 WUBlastX LTR_Pao 661422 662204 615 - . . scaffold676 WUBlastX LTR_Pao 662239 662655 223 - . . scaffold676 WUBlastX LTR_Pao 662658 663668 385 - . . scaffold676 WUBlastX LTR_Pao 662658 663386 429 - . . scaffold676 WUBlastX LTR_Pao 663613 664005 52 - . . scaffold676 WUBlastX LTR_Pao 663903 664091 24 - . . scaffold676 WUBlastX LTR_Pao 664268 664489 24 - . . scaffold676 WUBlastX LTR_Pao 664352 664534 29 - . . scaffold676 TRF Tandem_Repeat 674184 674289 65 + . . scaffold677 WUBlastX LTR_Pao 1 1299 475 - . . scaffold677 WUBlastX LTR_Pao 13 1608 400 - . . scaffold677 WUBlastX LTR_Pao 202 1884 115 - . . scaffold677 TRF Tandem_Repeat 3027 3053 54 + . . scaffold678 TRF Tandem_Repeat 3080 3108 51 + . . scaffold678 GLEAN promoter 7438 8437 0.999769 + . ID=CGI_10026329; scaffold678 GLEAN mRNA 8438 47368 0.999769 + . ID=CGI_10026329; scaffold678 TRF Tandem_Repeat 17311 17370 57 + . . scaffold678 TRF Tandem_Repeat 23352 23389 62 + . . scaffold678 TRF Tandem_Repeat 27931 27993 126 + . . scaffold678 TRF Tandem_Repeat 34654 34686 66 + . . scaffold678 TRF Tandem_Repeat 43560 43595 63 + . . scaffold678 GLEAN promoter 46651 47650 0.542456 + . ID=CGI_10026330; scaffold678 GLEAN mRNA 47651 52759 0.542456 + . ID=CGI_10026330; scaffold678 TRF Tandem_Repeat 53505 53539 70 + . . scaffold678 TRF Tandem_Repeat 57099 57170 58 + . . scaffold678 GLEAN mRNA 57574 57900 0.998504 - . ID=CGI_10026331; scaffold678 GLEAN promoter 57901 58900 0.998504 - . ID=CGI_10026331; scaffold678 WUBlastX LINE_L1-Tx1 60651 60896 48 - . . scaffold678 WUBlastX LINE_L1-Tx1 60693 61160 117 - . . scaffold678 WUBlastX LINE_L1 61151 61201 23 - . . scaffold678 WUBlastX LINE_L1-Tx1 61192 61488 63 - . . scaffold678 TRF Tandem_Repeat 61339 61390 68 + . . scaffold678 TRF Tandem_Repeat 61341 61379 64 + . . scaffold678 WUBlastX LINE_L1-Tx1 61486 61554 29 - . . scaffold678 GLEAN mRNA 64258 64584 1 - . ID=CGI_10026332; scaffold678 GLEAN promoter 64585 65584 1 - . ID=CGI_10026332; scaffold678 TRF Tandem_Repeat 72359 72419 122 + . . scaffold678 GLEAN promoter 84525 85524 0.702112 + . ID=CGI_10026333; scaffold678 GLEAN mRNA 85525 97631 0.702112 + . ID=CGI_10026333; scaffold678 WUBlastX LTR_Ngaro 88977 89324 23 - . . scaffold678 WUBlastX LTR_Ngaro 89375 89536 28 - . . scaffold678 WUBlastX LTR_Ngaro 89625 89816 33 - . . scaffold678 WUBlastX LTR_Ngaro 89655 89864 47 - . . scaffold678 WUBlastX LTR_Ngaro 89803 89943 41 - . . scaffold678 WUBlastX LTR_Ngaro 89942 90610 41 - . . scaffold678 TRF Tandem_Repeat 97648 97957 300 + . . scaffold678 TRF Tandem_Repeat 97648 97936 273 + . . scaffold678 TRF Tandem_Repeat 98192 98236 90 + . . scaffold678 GLEAN mRNA 107379 111896 0.993354 - . ID=CGI_10026334; scaffold678 GLEAN promoter 111897 112896 0.993354 - . ID=CGI_10026334; scaffold678 TRF Tandem_Repeat 116673 116739 134 + . . scaffold678 TRF Tandem_Repeat 121379 121436 55 + . . scaffold678 TRF Tandem_Repeat 121380 121436 89 + . . scaffold678 TRF Tandem_Repeat 123708 123741 59 + . . scaffold678 GLEAN mRNA 125969 132350 0.999995 - . ID=CGI_10026335; scaffold678 GLEAN promoter 130890 131889 0.499963 + . ID=CGI_10026336; scaffold678 GLEAN mRNA 131890 142320 0.499963 + . ID=CGI_10026336; scaffold678 GLEAN promoter 132351 133350 0.999995 - . ID=CGI_10026335; scaffold678 WUBlastX LTR_Copia 135761 136234 233 + . . scaffold678 WUBlastX LINE_R2-Hero 142856 144535 1259 + . . scaffold678 GLEAN mRNA 152717 153346 0.999572 - . ID=CGI_10026337; scaffold678 GLEAN promoter 153347 154346 0.999572 - . ID=CGI_10026337; scaffold678 TRF Tandem_Repeat 160134 160175 75 + . . scaffold678 GLEAN promoter 175810 176809 0.949336 + . ID=CGI_10026338; scaffold678 GLEAN mRNA 176810 185140 0.949336 + . ID=CGI_10026338; scaffold678 TRF Tandem_Repeat 177647 177982 378 + . . scaffold678 GLEAN mRNA 188179 191374 1 - . ID=CGI_10026339; scaffold678 GLEAN promoter 191375 192374 1 - . ID=CGI_10026339; scaffold678 TRF Tandem_Repeat 193990 194048 111 + . . scaffold678 GLEAN promoter 194355 195354 0.999676 + . ID=CGI_10026340; scaffold678 GLEAN mRNA 195355 210426 0.999676 + . ID=CGI_10026340; scaffold678 TRF Tandem_Repeat 205860 205903 70 + . . scaffold678 TRF Tandem_Repeat 205934 207060 1602 + . . scaffold678 GLEAN mRNA 212648 213790 0.984965 - . ID=CGI_10026341; scaffold678 GLEAN promoter 213791 214790 0.984965 - . ID=CGI_10026341; scaffold678 GLEAN mRNA 215662 216993 0.997836 - . ID=CGI_10026342; scaffold678 GLEAN promoter 216994 217993 0.997836 - . ID=CGI_10026342; scaffold678 GLEAN mRNA 217063 237953 0.926398 - . ID=CGI_10026343; scaffold678 TRF Tandem_Repeat 218075 218106 64 + . . scaffold678 TRF Tandem_Repeat 219690 219743 108 + . . scaffold678 TRF Tandem_Repeat 221073 221125 106 + . . scaffold678 WUBlastX LINE_RTE-X 225118 225426 51 - . . scaffold678 WUBlastX LINE_RTE-X 225118 225375 55 - . . scaffold678 TRF Tandem_Repeat 229761 229806 92 + . . scaffold678 TRF Tandem_Repeat 229806 229832 54 + . . scaffold678 GLEAN promoter 237954 238953 0.926398 - . ID=CGI_10026343; scaffold678 GLEAN mRNA 256905 257198 0.776794 - . ID=CGI_10026344; scaffold678 GLEAN promoter 257199 258198 0.776794 - . ID=CGI_10026344; scaffold678 GLEAN promoter 259781 260780 1 + . ID=CGI_10026345; scaffold678 TRF Tandem_Repeat 260539 260816 466 + . . scaffold678 GLEAN mRNA 260781 261361 1 + . ID=CGI_10026345; scaffold678 TRF Tandem_Repeat 273038 273107 58 + . . scaffold678 TRF Tandem_Repeat 273040 273112 60 + . . scaffold678 TRF Tandem_Repeat 273042 273112 58 + . . scaffold678 TRF Tandem_Repeat 283827 283864 67 + . . scaffold678 TRF Tandem_Repeat 283830 283872 52 + . . scaffold678 GLEAN mRNA 283930 293316 1 - . ID=CGI_10026346; scaffold678 TRF Tandem_Repeat 290539 290586 87 + . . scaffold678 GLEAN promoter 293317 294316 1 - . ID=CGI_10026346; scaffold678 GLEAN mRNA 295797 300822 0.998274 - . ID=CGI_10026347; scaffold678 GLEAN promoter 300823 301822 0.998274 - . ID=CGI_10026347; scaffold678 GLEAN promoter 301161 302160 0.998273 + . ID=CGI_10026348; scaffold678 GLEAN promoter 301912 302911 0.995581 + . ID=CGI_10026349; scaffold678 GLEAN mRNA 302161 302688 0.998273 + . ID=CGI_10026348; scaffold678 GLEAN mRNA 302912 306628 0.995581 + . ID=CGI_10026349; scaffold678 GLEAN promoter 307571 308570 0.499519 + . ID=CGI_10026350; scaffold678 GLEAN mRNA 308571 315808 0.499519 + . ID=CGI_10026350; scaffold678 GLEAN mRNA 317381 327820 1 - . ID=CGI_10026351; scaffold678 GLEAN promoter 327821 328820 1 - . ID=CGI_10026351; scaffold678 GLEAN promoter 328293 329292 1 + . ID=CGI_10026352; scaffold678 GLEAN mRNA 329293 332786 1 + . ID=CGI_10026352; scaffold678 GLEAN mRNA 336361 354594 0.449402 - . ID=CGI_10026353; scaffold678 TRF Tandem_Repeat 346892 346985 74 + . . scaffold678 TRF Tandem_Repeat 347125 347215 77 + . . scaffold678 GLEAN promoter 354595 355594 0.449402 - . ID=CGI_10026353; scaffold678 GLEAN mRNA 369137 377288 1 - . ID=CGI_10026354; scaffold678 GLEAN promoter 377289 378288 1 - . ID=CGI_10026354; scaffold678 GLEAN mRNA 377450 380670 1 - . ID=CGI_10026355; scaffold678 GLEAN promoter 380671 381670 1 - . ID=CGI_10026355; scaffold678 TRF Tandem_Repeat 386718 386747 60 + . . scaffold678 WUBlastX LINE_DRE 386862 386933 23 - . . scaffold678 WUBlastX LINE_CR1 386889 388007 919 - . . scaffold678 WUBlastX LINE_L2 387201 388178 279 - . . scaffold678 WUBlastX LINE_L1-Tx1 388452 388508 20 - . . scaffold678 WUBlastX LINE_Rex-Babar 388714 388794 37 - . . scaffold678 WUBlastX LINE_I 388861 388986 28 - . . scaffold678 WUBlastX LTR_Gypsy 391784 392389 139 + . . scaffold678 WUBlastX LTR_Gypsy-Cigr 391940 393997 247 + . . scaffold678 WUBlastX LTR_Gypsy 392936 394006 277 + . . scaffold678 GLEAN promoter 393092 394091 1 + . ID=CGI_10026356; scaffold678 WUBlastX LTR_Gypsy 393725 394057 109 + . . scaffold678 WUBlastX LTR_Gypsy 393872 394105 33 + . . scaffold678 GLEAN mRNA 394092 404361 1 + . ID=CGI_10026356; scaffold678 TRF Tandem_Repeat 397456 397922 702 + . . scaffold678 TRF Tandem_Repeat 397921 398929 1462 + . . scaffold678 TRF Tandem_Repeat 402404 403307 962 + . . scaffold678 TRF Tandem_Repeat 402439 403265 815 + . . scaffold678 TRF Tandem_Repeat 403213 403476 271 + . . scaffold678 GLEAN mRNA 406829 423063 0.999337 - . ID=CGI_10026357; scaffold678 GLEAN promoter 410281 411280 0.998703 + . ID=CGI_10026358; scaffold678 TRF Tandem_Repeat 411084 411215 221 + . . scaffold678 GLEAN mRNA 411281 428851 0.998703 + . ID=CGI_10026358; scaffold678 TRF Tandem_Repeat 411712 412136 338 + . . scaffold678 GLEAN promoter 423064 424063 0.999337 - . ID=CGI_10026357; scaffold678 TRF Tandem_Repeat 423640 423711 144 + . . scaffold678 GLEAN mRNA 425792 427923 0.999987 - . ID=CGI_10026359; scaffold678 TRF Tandem_Repeat 427443 427506 119 + . . scaffold678 GLEAN promoter 427924 428923 0.999987 - . ID=CGI_10026359; scaffold678 TRF Tandem_Repeat 428964 429080 148 + . . scaffold678 TRF Tandem_Repeat 429079 429173 95 + . . scaffold678 TRF Tandem_Repeat 430642 430737 86 + . . scaffold678 WUBlastX LINE_RTE-X 435048 435497 72 + . . scaffold678 WUBlastX LINE_RTE-X 435300 435524 121 + . . scaffold678 WUBlastX LINE_RTE-X 435517 435996 81 + . . scaffold678 GLEAN promoter 436961 437960 1 + . ID=CGI_10026360; scaffold678 TRF Tandem_Repeat 437483 437636 132 + . . scaffold678 TRF Tandem_Repeat 437718 437809 85 + . . scaffold678 GLEAN mRNA 437961 440150 1 + . ID=CGI_10026360; scaffold678 TRF Tandem_Repeat 448632 449124 156 + . . scaffold678 WUBlastX LTR_DIRS 450083 450448 33 + . . scaffold678 GLEAN mRNA 451825 460247 0.586336 - . ID=CGI_10026361; scaffold678 TRF Tandem_Repeat 454637 454823 266 + . . scaffold678 TRF Tandem_Repeat 456991 457054 128 + . . scaffold678 GLEAN promoter 459084 460083 0.993513 + . ID=CGI_10026362; scaffold678 GLEAN mRNA 460084 473123 0.993513 + . ID=CGI_10026362; scaffold678 GLEAN promoter 460248 461247 0.586336 - . ID=CGI_10026361; scaffold678 TRF Tandem_Repeat 463100 463208 157 + . . scaffold678 TRF Tandem_Repeat 463381 463652 372 + . . scaffold678 TRF Tandem_Repeat 467030 467187 262 + . . scaffold678 TRF Tandem_Repeat 467440 467492 106 + . . scaffold678 TRF Tandem_Repeat 467797 468391 1021 + . . scaffold678 TRF Tandem_Repeat 468857 468943 122 + . . scaffold678 TRF Tandem_Repeat 469019 469207 87 + . . scaffold678 TRF Tandem_Repeat 469033 469207 158 + . . scaffold678 TRF Tandem_Repeat 469206 469371 170 + . . scaffold678 TRF Tandem_Repeat 469449 469534 82 + . . scaffold678 TRF Tandem_Repeat 470091 470119 58 + . . scaffold678 WUBlastX LINE_RTE-X 475821 476081 59 - . . scaffold678 WUBlastX LINE_RTE-X 475887 476081 69 - . . scaffold678 WUBlastX LINE_RTE-X 475917 476081 75 - . . scaffold678 WUBlastX LINE_RTE-X 475956 476081 81 - . . scaffold678 TRF Tandem_Repeat 476178 476514 527 + . . scaffold678 TRF Tandem_Repeat 476513 476745 358 + . . scaffold678 TRF Tandem_Repeat 476746 477072 356 + . . scaffold678 TRF Tandem_Repeat 484420 485525 595 + . . scaffold678 TRF Tandem_Repeat 484420 485525 849 + . . scaffold678 TRF Tandem_Repeat 484480 485522 316 + . . scaffold678 TRF Tandem_Repeat 485632 487085 2287 + . . scaffold678 TRF Tandem_Repeat 488673 488708 72 + . . scaffold678 TRF Tandem_Repeat 489407 489720 364 + . . scaffold678 TRF Tandem_Repeat 489407 489973 672 + . . scaffold678 TRF Tandem_Repeat 489719 489973 334 + . . scaffold678 WUBlastX LINE_L2 490824 490886 21 + . . scaffold678 WUBlastX LINE_Jockey 491072 491137 27 + . . scaffold678 WUBlastX LINE_L1 491311 491433 22 + . . scaffold678 WUBlastX LINE_RTE-X 491387 492682 631 + . . scaffold678 WUBlastX LINE_RTE-X 492518 492715 39 + . . scaffold678 WUBlastX LINE_RTE-X 492784 493194 85 + . . scaffold678 WUBlastX LINE_RTE-X 492796 493275 81 + . . scaffold678 TRF Tandem_Repeat 495737 495776 80 + . . scaffold678 GLEAN promoter 504468 505467 0.575459 + . ID=CGI_10026363; scaffold678 TRF Tandem_Repeat 505024 505132 101 + . . scaffold678 GLEAN mRNA 505468 509539 0.575459 + . ID=CGI_10026363; scaffold678 TRF Tandem_Repeat 510906 511035 233 + . . scaffold678 TRF Tandem_Repeat 514019 514124 104 + . . scaffold678 TRF Tandem_Repeat 514035 514140 149 + . . scaffold678 GLEAN mRNA 525513 533106 1 - . ID=CGI_10026365; scaffold678 TRF Tandem_Repeat 527609 527656 96 + . . scaffold678 GLEAN promoter 532991 533990 0.996676 + . ID=CGI_10026366; scaffold678 GLEAN promoter 533107 534106 1 - . ID=CGI_10026365; scaffold678 GLEAN mRNA 533991 552984 0.996676 + . ID=CGI_10026366; scaffold678 TRF Tandem_Repeat 535373 536146 641 + . . scaffold678 TRF Tandem_Repeat 539544 539663 120 + . . scaffold678 TRF Tandem_Repeat 540623 541032 454 + . . scaffold678 TRF Tandem_Repeat 549887 550311 561 + . . scaffold678 GLEAN mRNA 554719 561685 0.622561 - . ID=CGI_10026367; scaffold678 GLEAN promoter 561686 562685 0.622561 - . ID=CGI_10026367; scaffold678 TRF Tandem_Repeat 565488 565747 237 + . . scaffold678 TRF Tandem_Repeat 574462 574488 54 + . . scaffold678 WUBlastX LTR_Gypsy 582519 582599 42 - . . scaffold678 WUBlastX LTR_Gypsy-Cigr 582583 582954 86 - . . scaffold678 WUBlastX LTR_Gypsy 582586 582825 109 - . . scaffold678 WUBlastX LTR_Gypsy 582894 583211 45 - . . scaffold678 WUBlastX LTR_Gypsy-Cigr 582933 583292 42 - . . scaffold678 WUBlastX LTR_Gypsy 584496 584672 22 - . . scaffold678 WUBlastX LINE_L2 585469 585597 44 + . . scaffold678 TRF Tandem_Repeat 587613 587723 115 + . . scaffold678 WUBlastX LINE_L2 590171 590551 95 + . . scaffold678 WUBlastX LINE_L2 590243 590578 163 + . . scaffold678 WUBlastX LINE_L2 590530 590736 126 + . . scaffold678 WUBlastX LINE_CR1 590530 590781 79 + . . scaffold678 WUBlastX LINE_L2 590530 590934 59 + . . scaffold678 WUBlastX LINE_CR1-L2 590933 591235 42 + . . scaffold678 WUBlastX LINE_CR1-L2 590936 591187 61 + . . scaffold678 WUBlastX LINE_Jockey 591204 591272 29 + . . scaffold678 WUBlastX LINE_L2 591213 591335 21 + . . scaffold678 WUBlastX LINE_CR1-L2 591319 591396 29 + . . scaffold678 WUBlastX LINE_L2 591359 591562 21 + . . scaffold678 TRF Tandem_Repeat 591606 591739 205 + . . scaffold678 TRF Tandem_Repeat 594760 594790 62 + . . scaffold678 TRF Tandem_Repeat 597328 597359 64 + . . scaffold678 TRF Tandem_Repeat 603822 603863 84 + . . scaffold678 TRF Tandem_Repeat 610709 610734 52 + . . scaffold678 TRF Tandem_Repeat 611292 611342 102 + . . scaffold678 WUBlastX LINE_L1-Tx1 611418 611885 23 - . . scaffold678 WUBlastX LINE_L1-Tx1 611547 611798 56 - . . scaffold678 WUBlastX LINE_L1-Tx1 611592 611798 73 - . . scaffold678 TRF Tandem_Repeat 614107 614153 94 + . . scaffold678 TRF Tandem_Repeat 614672 615196 488 + . . scaffold678 TRF Tandem_Repeat 615240 615369 130 + . . scaffold678 GLEAN mRNA 618797 619012 1 - . ID=CGI_10026368; scaffold678 GLEAN promoter 619013 620012 1 - . ID=CGI_10026368; scaffold678 TRF Tandem_Repeat 622046 622107 115 + . . scaffold678 TRF Tandem_Repeat 622654 622732 158 + . . scaffold678 GLEAN mRNA 636648 664664 0.986036 - . ID=CGI_10026369; scaffold678 WUBlastX LINE_L2 637625 637822 31 - . . scaffold678 TRF Tandem_Repeat 642629 642663 61 + . . scaffold678 TRF Tandem_Repeat 646799 646844 92 + . . scaffold678 WUBlastX LINE_L2 647254 647907 46 + . . scaffold678 WUBlastX LINE_L2 647458 647925 129 + . . scaffold678 WUBlastX LINE_L2 647572 647910 168 + . . scaffold678 WUBlastX LINE_L2 647894 649093 814 + . . scaffold678 TRF Tandem_Repeat 649315 649349 70 + . . scaffold678 TRF Tandem_Repeat 656685 656718 68 + . . scaffold678 GLEAN promoter 664665 665664 0.986036 - . ID=CGI_10026369; scaffold678 WUBlastX LINE_Penelope 665219 665704 39 - . . scaffold678 TRF Tandem_Repeat 666420 666918 800 + . . scaffold678 TRF Tandem_Repeat 667950 668182 171 + . . scaffold678 GLEAN promoter 668751 669750 0.999376 + . ID=CGI_10026370; scaffold678 GLEAN mRNA 669751 675866 0.999376 + . ID=CGI_10026370; scaffold678 TRF Tandem_Repeat 686110 686319 402 + . . scaffold678 WUBlastX LINE_RTE-X 687566 687721 76 - . . scaffold678 GLEAN promoter 690027 691026 0.886615 + . ID=CGI_10026371; scaffold678 GLEAN mRNA 691027 692957 0.886615 + . ID=CGI_10026371; scaffold678 TRF Tandem_Repeat 694982 695016 70 + . . scaffold678 TRF Tandem_Repeat 696692 698772 3653 + . . scaffold678 GLEAN promoter 698458 699457 0.996283 + . ID=CGI_10026372; scaffold678 GLEAN mRNA 699458 700549 0.996283 + . ID=CGI_10026372; scaffold678 GLEAN promoter 701719 702718 0.773227 + . ID=CGI_10026373; scaffold678 GLEAN mRNA 702719 705538 0.773227 + . ID=CGI_10026373; scaffold678 TRF Tandem_Repeat 703390 703446 114 + . . scaffold678 TRF Tandem_Repeat 703940 703998 118 + . . scaffold678 TRF Tandem_Repeat 708060 708338 355 + . . scaffold678 TRF Tandem_Repeat 712142 712231 117 + . . scaffold678 GLEAN mRNA 712494 715921 0.651135 - . ID=CGI_10026374; scaffold678 TRF Tandem_Repeat 714103 714164 63 + . . scaffold678 TRF Tandem_Repeat 714104 714164 70 + . . scaffold678 TRF Tandem_Repeat 714334 715343 1388 + . . scaffold678 GLEAN promoter 715922 716921 0.651135 - . ID=CGI_10026374; scaffold678 GLEAN mRNA 717644 727846 0.937362 - . ID=CGI_10026375; scaffold678 WUBlastX LINE_L1-Tx1 720730 721038 20 - . . scaffold678 TRF Tandem_Repeat 726081 726113 66 + . . scaffold678 TRF Tandem_Repeat 727569 727640 72 + . . scaffold678 GLEAN promoter 727847 728846 0.937362 - . ID=CGI_10026375; scaffold678 TRF Tandem_Repeat 729221 729265 58 + . . scaffold678 TRF Tandem_Repeat 729263 729319 51 + . . scaffold678 WUBlastX LINE_L1 732683 732748 21 - . . scaffold678 WUBlastX LINE_L1 732761 732868 25 - . . scaffold678 WUBlastX LINE_L1-Tx1 733590 734675 575 - . . scaffold678 WUBlastX LINE_L1-Tx1 733590 735881 542 - . . scaffold678 GLEAN mRNA 736675 738457 1 - . ID=CGI_10026376; scaffold678 GLEAN promoter 738458 739457 1 - . ID=CGI_10026376; scaffold678 TRF Tandem_Repeat 739915 739958 56 + . . scaffold678 GLEAN mRNA 740088 752113 0.995705 - . ID=CGI_10026377; scaffold678 GLEAN promoter 741489 742488 0.987721 + . ID=CGI_10026378; scaffold678 GLEAN mRNA 742489 752098 0.987721 + . ID=CGI_10026378; scaffold678 WUBlastX DNA_Harbinger 746555 746917 274 - . . scaffold678 WUBlastX DNA_Harbinger 747022 747135 53 - . . scaffold678 TRF Tandem_Repeat 747618 747651 59 + . . scaffold678 TRF Tandem_Repeat 747651 747677 54 + . . scaffold678 WUBlastX DNA_Harbinger 747761 747919 111 - . . scaffold678 WUBlastX DNA_Harbinger 748742 749143 77 - . . scaffold678 GLEAN promoter 752114 753113 0.995705 - . ID=CGI_10026377; scaffold678 GLEAN mRNA 754925 757320 1 - . ID=CGI_10026379; scaffold678 GLEAN promoter 757321 758320 1 - . ID=CGI_10026379; scaffold678 TRF Tandem_Repeat 761141 761198 116 + . . scaffold678 GLEAN mRNA 767574 781366 0.749747 - . ID=CGI_10026380; scaffold678 TRF Tandem_Repeat 770181 770208 56 + . . scaffold678 GLEAN promoter 781367 782366 0.749747 - . ID=CGI_10026380; scaffold678 GLEAN promoter 786164 787163 0.988272 + . ID=CGI_10026381; scaffold678 GLEAN mRNA 787164 787427 0.988272 + . ID=CGI_10026381; scaffold678 WUBlastX LINE_RTE-X 789698 789865 29 + . . scaffold678 WUBlastX LINE_RTE-X 789761 789868 47 + . . scaffold678 WUBlastX LINE_RTE-X 789871 790092 46 + . . scaffold678 WUBlastX LINE_CR1 792631 793050 94 + . . scaffold678 WUBlastX LINE_CR1 793047 793169 32 + . . scaffold678 WUBlastX LINE_CR1 793077 793634 91 + . . scaffold678 WUBlastX LINE_CR1 793586 793795 114 + . . scaffold678 WUBlastX LINE_CR1 793613 793867 53 + . . scaffold678 WUBlastX LINE_CR1 794433 794627 52 + . . scaffold678 WUBlastX LINE_CR1 794587 794682 46 + . . scaffold678 WUBlastX LINE_CR1 794646 794834 50 + . . scaffold678 WUBlastX LINE_CR1 794682 794822 56 + . . scaffold678 WUBlastX LINE_CR1 794755 795033 104 + . . scaffold678 WUBlastX LINE_CR1 794827 795012 121 + . . scaffold678 WUBlastX LINE_CR1 795017 795253 75 + . . scaffold678 WUBlastX LINE_CR1 795252 795317 27 + . . scaffold678 GLEAN promoter 796592 797591 0.957761 + . ID=CGI_10026382; scaffold678 GLEAN mRNA 797592 830433 0.957761 + . ID=CGI_10026382; scaffold678 TRF Tandem_Repeat 805751 805782 64 + . . scaffold678 TRF Tandem_Repeat 805782 805823 84 + . . scaffold678 WUBlastX LTR_Gypsy 815428 815622 25 + . . scaffold678 WUBlastX LTR_Gypsy 815654 815860 67 + . . scaffold678 WUBlastX LTR_Gypsy 815672 815842 114 + . . scaffold678 TRF Tandem_Repeat 825923 826034 93 + . . scaffold678 TRF Tandem_Repeat 826985 827338 234 + . . scaffold678 TRF Tandem_Repeat 839395 839509 221 + . . scaffold678 TRF Tandem_Repeat 840753 841100 416 + . . scaffold678 TRF Tandem_Repeat 840753 841100 398 + . . scaffold678 TRF Tandem_Repeat 840758 841100 403 + . . scaffold678 TRF Tandem_Repeat 842340 842592 169 + . . scaffold678 TRF Tandem_Repeat 842699 842887 248 + . . scaffold678 GLEAN promoter 843351 844350 0.999351 + . ID=CGI_10026383; scaffold678 TRF Tandem_Repeat 843928 843961 59 + . . scaffold678 GLEAN mRNA 844351 863024 0.999351 + . ID=CGI_10026383; scaffold678 TRF Tandem_Repeat 852568 853025 475 + . . scaffold678 TRF Tandem_Repeat 852568 853034 424 + . . scaffold678 TRF Tandem_Repeat 852568 853025 506 + . . scaffold678 TRF Tandem_Repeat 852572 853034 366 + . . scaffold678 TRF Tandem_Repeat 865390 865425 56 + . . scaffold678 GLEAN mRNA 873968 880482 0.999998 - . ID=CGI_10026385; scaffold678 TRF Tandem_Repeat 874423 874811 646 + . . scaffold678 TRF Tandem_Repeat 877334 877811 875 + . . scaffold678 GLEAN promoter 880378 881377 1 + . ID=CGI_10026386; scaffold678 GLEAN promoter 880483 881482 0.999998 - . ID=CGI_10026385; scaffold678 GLEAN mRNA 881378 888077 1 + . ID=CGI_10026386; scaffold678 TRF Tandem_Repeat 883720 884232 812 + . . scaffold678 TRF Tandem_Repeat 883724 884232 803 + . . scaffold678 TRF Tandem_Repeat 885068 885386 460 + . . scaffold678 TRF Tandem_Repeat 885984 887173 1624 + . . scaffold678 GLEAN mRNA 890721 895466 1 - . ID=CGI_10026387; scaffold678 GLEAN promoter 895467 896466 1 - . ID=CGI_10026387; scaffold678 TRF Tandem_Repeat 901096 901183 176 + . . scaffold678 WUBlastX LINE_L2 902164 902541 115 + . . scaffold678 WUBlastX LINE_L2 902164 902616 44 + . . scaffold678 TRF Tandem_Repeat 916524 917018 767 + . . scaffold678 GLEAN promoter 917081 918080 0.999999 + . ID=CGI_10026388; scaffold678 GLEAN mRNA 918081 918620 0.999999 + . ID=CGI_10026388; scaffold678 TRF Tandem_Repeat 920800 920851 104 + . . scaffold678 TRF Tandem_Repeat 921617 922452 851 + . . scaffold678 TRF Tandem_Repeat 921643 922452 869 + . . scaffold678 TRF Tandem_Repeat 921643 922452 884 + . . scaffold678 TRF Tandem_Repeat 926422 926450 58 + . . scaffold678 GLEAN mRNA 930160 937061 1 - . ID=CGI_10026389; scaffold678 TRF Tandem_Repeat 931546 932066 652 + . . scaffold678 TRF Tandem_Repeat 933892 934061 236 + . . scaffold678 GLEAN promoter 937062 938061 1 - . ID=CGI_10026389; scaffold678 TRF Tandem_Repeat 941382 941411 60 + . . scaffold678 TRF Tandem_Repeat 941409 941442 68 + . . scaffold678 TRF Tandem_Repeat 950614 951802 1666 + . . scaffold678 TRF Tandem_Repeat 954695 955529 956 + . . scaffold678 TRF Tandem_Repeat 957771 957956 318 + . . scaffold678 TRF Tandem_Repeat 960987 961054 122 + . . scaffold678 TRF Tandem_Repeat 961997 962056 120 + . . scaffold678 GLEAN promoter 964791 965790 0.593103 + . ID=CGI_10026390; scaffold678 GLEAN mRNA 965791 967680 0.593103 + . ID=CGI_10026390; scaffold678 TRF Tandem_Repeat 970589 971609 1113 + . . scaffold678 GLEAN mRNA 990593 990979 0.955912 - . ID=CGI_10026391; scaffold678 WUBlastX DNA_Harbinger 990605 990961 45 - . . scaffold678 GLEAN promoter 990980 991979 0.955912 - . ID=CGI_10026391; scaffold678 TRF Tandem_Repeat 1005217 1005293 102 + . . scaffold678 TRF Tandem_Repeat 1007487 1007545 109 + . . scaffold678 GLEAN promoter 1026268 1027267 0.994916 + . ID=CGI_10026393; scaffold678 GLEAN mRNA 1027147 1051527 0.783365 - . ID=CGI_10026392; scaffold678 GLEAN mRNA 1027268 1034952 0.994916 + . ID=CGI_10026393; scaffold678 TRF Tandem_Repeat 1030470 1031600 1429 + . . scaffold678 TRF Tandem_Repeat 1032109 1032448 477 + . . scaffold678 GLEAN promoter 1037996 1038995 0.445307 + . ID=CGI_10026394; scaffold678 GLEAN mRNA 1038996 1039379 0.445307 + . ID=CGI_10026394; scaffold678 GLEAN promoter 1051528 1052527 0.783365 - . ID=CGI_10026392; scaffold678 GLEAN promoter 1065332 1066331 0.799747 + . ID=CGI_10026395; scaffold678 GLEAN mRNA 1066332 1086044 0.799747 + . ID=CGI_10026395; scaffold678 TRF Tandem_Repeat 1067664 1067879 360 + . . scaffold678 GLEAN mRNA 1091792 1098564 0.995194 - . ID=CGI_10026396; scaffold678 TRF Tandem_Repeat 1092083 1092108 52 + . . scaffold678 GLEAN promoter 1098565 1099564 0.995194 - . ID=CGI_10026396; scaffold678 WUBlastX LINE_RTE-X 1100219 1100488 54 - . . scaffold678 WUBlastX LINE_RTE-X 1100273 1100446 57 - . . scaffold678 WUBlastX LINE_RTE-X 1100336 1100590 75 - . . scaffold678 WUBlastX LINE_RTE-X 1100520 1100894 123 - . . scaffold678 TRF Tandem_Repeat 1117289 1117337 98 + . . scaffold678 WUBlastX LINE_L1-Tx1 1118476 1119237 68 - . . scaffold678 WUBlastX LINE_L1-Tx1 1118602 1119237 112 - . . scaffold678 GLEAN mRNA 1122653 1124763 0.999487 - . ID=CGI_10026397; scaffold678 GLEAN promoter 1124417 1125416 1 + . ID=CGI_10026398; scaffold678 GLEAN promoter 1124764 1125763 0.999487 - . ID=CGI_10026397; scaffold678 GLEAN mRNA 1125417 1130828 1 + . ID=CGI_10026398; scaffold678 TRF Tandem_Repeat 1135892 1135937 56 + . . scaffold678 TRF Tandem_Repeat 1135951 1136919 1582 + . . scaffold678 GLEAN promoter 1140731 1141730 0.998973 + . ID=CGI_10026399; scaffold678 TRF Tandem_Repeat 1141174 1141203 60 + . . scaffold678 GLEAN mRNA 1141731 1145739 0.998973 + . ID=CGI_10026399; scaffold678 GLEAN mRNA 1144599 1151137 0.374195 - . ID=CGI_10026400; scaffold678 TRF Tandem_Repeat 1146490 1147531 1616 + . . scaffold678 TRF Tandem_Repeat 1146494 1147531 1545 + . . scaffold678 TRF Tandem_Repeat 1149584 1150518 1228 + . . scaffold678 GLEAN promoter 1151138 1152137 0.374195 - . ID=CGI_10026400; scaffold678 TRF Tandem_Repeat 1154003 1154131 82 + . . scaffold678 TRF Tandem_Repeat 1154003 1154131 73 + . . scaffold678 TRF Tandem_Repeat 1154003 1154131 73 + . . scaffold678 TRF Tandem_Repeat 1154042 1154113 92 + . . scaffold678 TRF Tandem_Repeat 1154786 1154900 128 + . . scaffold678 GLEAN mRNA 1154923 1160770 1 - . ID=CGI_10026401; scaffold678 GLEAN promoter 1160771 1161770 1 - . ID=CGI_10026401; scaffold678 TRF Tandem_Repeat 1160793 1160840 96 + . . scaffold678 TRF Tandem_Repeat 1164989 1165015 54 + . . scaffold678 GLEAN mRNA 1170493 1172618 1 - . ID=CGI_10026402; scaffold678 GLEAN promoter 1172619 1173314 1 - . ID=CGI_10026402; scaffold68 WUBlastX LINE_RTE-X 12 245 64 - . . scaffold68 TRF Tandem_Repeat 904 950 94 + . . scaffold680 WUBlastX LTR_Ngaro 3685 4089 129 + . . scaffold680 WUBlastX LTR_Ngaro 3694 4245 71 + . . scaffold680 WUBlastX LTR_Ngaro 4286 4861 142 + . . scaffold680 WUBlastX LTR_Ngaro 4328 4780 155 + . . scaffold680 GLEAN mRNA 5413 24052 0.999891 - . ID=CGI_10003336; scaffold680 GLEAN promoter 24053 25052 0.999891 - . ID=CGI_10003336; scaffold680 WUBlastX LTR_Ngaro 27322 27789 342 + . . scaffold680 WUBlastX LTR_Ngaro 27780 28049 38 + . . scaffold680 WUBlastX LTR_Ngaro 27906 28043 42 + . . scaffold680 WUBlastX LTR_Ngaro 28034 28222 48 + . . scaffold680 WUBlastX LTR_Ngaro 28192 28584 108 + . . scaffold680 WUBlastX LTR_Ngaro 28309 28581 117 + . . scaffold680 WUBlastX LTR_Ngaro 28596 28679 52 + . . scaffold680 WUBlastX LTR_Ngaro 28611 28697 41 + . . scaffold680 GLEAN mRNA 28858 40321 0.544852 - . ID=CGI_10003337; scaffold680 TRF Tandem_Repeat 35756 35791 72 + . . scaffold680 WUBlastX LINE_Penelope 36705 36977 34 + . . scaffold680 WUBlastX LINE_Penelope 36982 37728 255 + . . scaffold680 WUBlastX LINE_Penelope 36985 37938 146 + . . scaffold680 GLEAN promoter 40322 41321 0.544852 - . ID=CGI_10003337; scaffold680 GLEAN promoter 62314 63313 1 + . ID=CGI_10003338; scaffold680 GLEAN mRNA 63314 67266 1 + . ID=CGI_10003338; scaffold680 TRF Tandem_Repeat 67540 67572 66 + . . scaffold681 TRF Tandem_Repeat 6514 7116 830 + . . scaffold681 TRF Tandem_Repeat 7876 8039 231 + . . scaffold681 WUBlastX LINE_RTE-X 21744 22010 41 + . . scaffold681 WUBlastX LINE_RTE-BovB 22192 23181 84 + . . scaffold681 WUBlastX LINE_CR1 22453 23190 88 + . . scaffold681 WUBlastX LINE_RTE-BovB 22567 23418 127 + . . scaffold681 WUBlastX LINE_RTE-X 22645 23325 212 + . . scaffold681 WUBlastX LINE_RTE-X 22645 23217 393 + . . scaffold681 WUBlastX LINE_L1-Tx1 23224 23538 86 + . . scaffold681 WUBlastX LINE_L1 23227 23454 106 + . . scaffold681 WUBlastX LINE_CR1 23558 23977 63 + . . scaffold681 WUBlastX LINE_RTE-X 23639 24352 138 + . . scaffold681 WUBlastX LINE_RTE-X 23639 24487 122 + . . scaffold681 WUBlastX LINE_RTE-X 24514 25497 320 + . . scaffold681 WUBlastX LINE_RTE-X 25470 27062 717 + . . scaffold681 GLEAN promoter 26385 27384 0.999855 + . ID=CGI_10014717; scaffold681 GLEAN mRNA 27385 42751 0.999855 + . ID=CGI_10014717; scaffold681 WUBlastX LTR_DIRS 32264 32737 143 - . . scaffold681 TRF Tandem_Repeat 32781 32969 164 + . . scaffold681 WUBlastX LINE_CR1-L2 34994 35437 45 + . . scaffold681 WUBlastX LINE_L2 35132 35443 75 + . . scaffold681 WUBlastX LINE_L2 35177 35428 86 + . . scaffold681 WUBlastX LINE_CR1 35255 35530 57 + . . scaffold681 WUBlastX LINE_L2 35261 35650 43 + . . scaffold681 TRF Tandem_Repeat 38276 38303 56 + . . scaffold681 GLEAN promoter 42221 43220 0.777767 + . ID=CGI_10014719; scaffold681 GLEAN mRNA 42450 52406 0.356255 - . ID=CGI_10014718; scaffold681 GLEAN mRNA 43221 46223 0.777767 + . ID=CGI_10014719; scaffold681 WUBlastX LINE_RTE-X 44259 44786 132 - . . scaffold681 GLEAN promoter 50586 51585 0.96497 + . ID=CGI_10014720; scaffold681 GLEAN mRNA 51586 54604 0.96497 + . ID=CGI_10014720; scaffold681 GLEAN promoter 52407 53406 0.356255 - . ID=CGI_10014718; scaffold681 WUBlastX DNA_TcMar-Fot1 54240 54806 29 - . . scaffold681 WUBlastX DNA_TcMar-Fot1 54570 54866 79 - . . scaffold681 WUBlastX DNA_TcMar-Fot1 54570 54806 90 - . . scaffold681 TRF Tandem_Repeat 54990 55192 249 + . . scaffold681 TRF Tandem_Repeat 55101 55181 58 + . . scaffold681 GLEAN promoter 55607 56606 0.999967 + . ID=CGI_10014721; scaffold681 TRF Tandem_Repeat 56298 56574 350 + . . scaffold681 TRF Tandem_Repeat 56298 56585 340 + . . scaffold681 GLEAN mRNA 56607 61222 0.999967 + . ID=CGI_10014721; scaffold681 WUBlastX LINE_RTE-X 57434 57772 98 - . . scaffold681 TRF Tandem_Repeat 58081 58134 65 + . . scaffold681 TRF Tandem_Repeat 58081 58127 64 + . . scaffold681 TRF Tandem_Repeat 59538 59596 111 + . . scaffold681 GLEAN promoter 60241 61240 0.482696 + . ID=CGI_10014722; scaffold681 GLEAN mRNA 61241 68104 0.482696 + . ID=CGI_10014722; scaffold681 WUBlastX DNA_TcMar-Fot1 64848 65045 64 - . . scaffold681 WUBlastX DNA_TcMar-Fot1 64890 65081 73 - . . scaffold681 GLEAN mRNA 69710 75885 1 - . ID=CGI_10014723; scaffold681 GLEAN promoter 75886 76885 1 - . ID=CGI_10014723; scaffold681 TRF Tandem_Repeat 78552 78667 196 + . . scaffold681 TRF Tandem_Repeat 78552 78667 187 + . . scaffold681 TRF Tandem_Repeat 78552 78667 187 + . . scaffold681 GLEAN promoter 79571 80570 1 + . ID=CGI_10014724; scaffold681 GLEAN mRNA 80571 85248 1 + . ID=CGI_10014724; scaffold681 GLEAN mRNA 86349 91072 0.734569 - . ID=CGI_10014725; scaffold681 GLEAN promoter 91073 92072 0.734569 - . ID=CGI_10014725; scaffold681 TRF Tandem_Repeat 91266 91334 97 + . . scaffold681 GLEAN mRNA 105673 110690 1 - . ID=CGI_10014726; scaffold681 GLEAN promoter 110691 111690 1 - . ID=CGI_10014726; scaffold681 GLEAN promoter 112407 113406 0.999675 + . ID=CGI_10014727; scaffold681 GLEAN mRNA 113407 119484 0.999675 + . ID=CGI_10014727; scaffold681 TRF Tandem_Repeat 115546 115605 120 + . . scaffold681 GLEAN mRNA 126460 130894 0.999676 - . ID=CGI_10014728; scaffold681 GLEAN promoter 130895 131894 0.999676 - . ID=CGI_10014728; scaffold681 TRF Tandem_Repeat 134160 134193 50 + . . scaffold681 TRF Tandem_Repeat 134162 134208 53 + . . scaffold681 TRF Tandem_Repeat 135882 135932 102 + . . scaffold681 GLEAN promoter 160255 161254 0.813889 + . ID=CGI_10014729; scaffold681 GLEAN mRNA 161255 178477 0.813889 + . ID=CGI_10014729; scaffold681 TRF Tandem_Repeat 167880 167913 68 + . . scaffold681 TRF Tandem_Repeat 181377 182825 1802 + . . scaffold681 WUBlastX LINE_Penelope 190105 190203 20 + . . scaffold681 WUBlastX LINE_Penelope 190198 190881 314 + . . scaffold681 WUBlastX LINE_Penelope 190243 191052 150 + . . scaffold681 TRF Tandem_Repeat 191990 192043 63 + . . scaffold681 TRF Tandem_Repeat 191990 192037 69 + . . scaffold681 WUBlastX LINE_Penelope 192084 192701 179 + . . scaffold681 TRF Tandem_Repeat 196872 196959 176 + . . scaffold681 TRF Tandem_Repeat 196957 197002 78 + . . scaffold681 GLEAN promoter 208295 209294 0.913746 + . ID=CGI_10014730; scaffold681 GLEAN mRNA 209295 209873 0.913746 + . ID=CGI_10014730; scaffold681 TRF Tandem_Repeat 221577 221633 73 + . . scaffold681 TRF Tandem_Repeat 221579 221632 56 + . . scaffold681 TRF Tandem_Repeat 221582 221632 54 + . . scaffold681 WUBlastX LINE_CR1-L2 227553 227813 69 + . . scaffold681 WUBlastX LINE_CR1-L2 227860 228003 21 + . . scaffold681 WUBlastX LINE_L2 230160 230330 56 + . . scaffold681 TRF Tandem_Repeat 236539 236702 211 + . . scaffold681 TRF Tandem_Repeat 236763 236938 149 + . . scaffold681 WUBlastX LINE_Jockey 249305 249766 70 - . . scaffold681 WUBlastX LINE_RTE-X 249398 250000 152 - . . scaffold681 WUBlastX LINE_L2 249401 250189 91 - . . scaffold681 WUBlastX LINE_RTE-X 249458 249967 179 - . . scaffold681 TRF Tandem_Repeat 251353 251419 84 + . . scaffold681 TRF Tandem_Repeat 251354 251424 54 + . . scaffold681 TRF Tandem_Repeat 258088 258123 72 + . . scaffold681 GLEAN promoter 260347 261346 0.999068 + . ID=CGI_10014731; scaffold681 WUBlastX LTR_Pao 261347 261856 26 + . . scaffold681 GLEAN mRNA 261347 261886 0.999068 + . ID=CGI_10014731; scaffold681 WUBlastX LTR_Pao 261906 262196 48 + . . scaffold681 WUBlastX LTR_Pao 261936 262292 40 + . . scaffold681 WUBlastX LTR_Pao 262265 262696 217 + . . scaffold681 WUBlastX LTR_Pao 262352 262699 246 + . . scaffold681 WUBlastX LTR_Pao 262574 262729 25 + . . scaffold681 WUBlastX LTR_Pao 262923 265016 1317 + . . scaffold681 WUBlastX LTR_Pao 265036 266610 997 + . . scaffold681 WUBlastX LTR_Pao 266565 267041 389 + . . scaffold681 WUBlastX LTR_Pao 267041 267460 377 + . . scaffold681 GLEAN mRNA 267678 267974 0.952244 - . ID=CGI_10014732; scaffold681 GLEAN promoter 267975 268974 0.952244 - . ID=CGI_10014732; scaffold681 WUBlastX DNA_P 268683 269009 101 - . . scaffold681 WUBlastX LTR_Gypsy 269165 269953 40 + . . scaffold681 WUBlastX LTR_Gypsy 269324 271414 1407 + . . scaffold681 TRF Tandem_Repeat 279740 280259 517 + . . scaffold681 TRF Tandem_Repeat 282349 282545 260 + . . scaffold681 TRF Tandem_Repeat 282350 282542 67 + . . scaffold681 GLEAN mRNA 286098 294327 0.814576 - . ID=CGI_10014734; scaffold681 GLEAN promoter 294328 295327 0.814576 - . ID=CGI_10014734; scaffold681 TRF Tandem_Repeat 295025 295063 69 + . . scaffold681 WUBlastX LINE_Jockey 295283 295630 35 + . . scaffold681 WUBlastX LINE_RTE-X 295621 295734 21 + . . scaffold681 WUBlastX LINE_RTE-X 295654 295734 21 + . . scaffold681 WUBlastX LINE_CR1 295693 295905 24 + . . scaffold681 WUBlastX LINE_L2 295699 295863 28 + . . scaffold681 WUBlastX LINE_CR1 296061 296426 25 + . . scaffold681 WUBlastX LINE_I 296118 296441 46 + . . scaffold681 WUBlastX LINE_Jockey 296488 296940 75 + . . scaffold681 WUBlastX LINE_Telomeric 296551 296895 89 + . . scaffold681 WUBlastX LINE_RTE-BovB 296647 296913 93 + . . scaffold681 WUBlastX LINE_RTE-RTE 296695 296880 95 + . . scaffold681 WUBlastX LINE_RTE-X 296874 297083 46 + . . scaffold681 WUBlastX LINE_CR1-L2 297015 297113 25 + . . scaffold681 WUBlastX LINE_RTE-X 297037 297375 24 + . . scaffold681 WUBlastX LINE_Jockey 297160 297363 42 + . . scaffold681 WUBlastX LINE_RTE-X 297592 297675 21 + . . scaffold681 TRF Tandem_Repeat 298685 298717 66 + . . scaffold681 TRF Tandem_Repeat 298810 299194 350 + . . scaffold681 WUBlastX DNA_IS4EU 301932 302726 372 + . . scaffold681 WUBlastX DNA_IS4EU 303213 303476 72 - . . scaffold681 WUBlastX DNA_IS4EU 303222 303416 80 - . . scaffold681 WUBlastX DNA_IS4EU 303603 303776 33 - . . scaffold681 WUBlastX DNA_Kolobok-IS4 303630 303803 29 - . . scaffold681 WUBlastX DNA_IS4EU 303630 303701 42 - . . scaffold681 WUBlastX DNA_IS4EU 303954 304109 27 - . . scaffold681 WUBlastX DNA_IS4EU 304222 304374 25 - . . scaffold681 WUBlastX DNA_IS4EU 304237 304341 50 - . . scaffold681 WUBlastX DNA_Kolobok-IS4 304240 304365 29 - . . scaffold681 WUBlastX LINE_L1-Tx1 308569 308790 24 + . . scaffold681 WUBlastX LINE_L1-Tx1 308656 308781 26 + . . scaffold681 WUBlastX LINE_L1-Tx1 308668 308772 48 + . . scaffold681 WUBlastX LINE_L1 308671 308850 23 + . . scaffold681 WUBlastX LINE_L1 308871 309287 23 + . . scaffold681 WUBlastX LINE_L1-Tx1 308973 309272 30 + . . scaffold681 WUBlastX LINE_L1-Tx1 309114 309257 47 + . . scaffold681 WUBlastX LINE_L1-Tx1 309944 310030 66 + . . scaffold681 WUBlastX LTR_Gypsy-Troyk 314321 314512 50 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 314521 314748 146 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 314786 315049 202 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 315058 315984 719 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 316300 316497 128 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 316489 318078 722 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 318050 318943 671 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 321051 321107 50 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 321104 321367 142 - . . scaffold681 WUBlastX LINE_L1-Tx1 321317 322333 77 + . . scaffold681 WUBlastX LINE_L1-Tx1 321716 322333 135 + . . scaffold681 WUBlastX LTR_Gypsy-Troyk 322568 322906 292 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 322905 322994 74 - . . scaffold681 WUBlastX LTR_Gypsy-Troyk 322908 323018 33 - . . scaffold681 TRF Tandem_Repeat 323944 324144 174 + . . scaffold681 TRF Tandem_Repeat 326163 326483 285 + . . scaffold681 TRF Tandem_Repeat 326163 326468 167 + . . scaffold681 TRF Tandem_Repeat 326180 326426 114 + . . scaffold681 TRF Tandem_Repeat 326188 326438 198 + . . scaffold681 TRF Tandem_Repeat 326254 326448 105 + . . scaffold681 TRF Tandem_Repeat 326278 326483 186 + . . scaffold681 TRF Tandem_Repeat 327156 327252 148 + . . scaffold681 TRF Tandem_Repeat 334645 334836 348 + . . scaffold681 TRF Tandem_Repeat 339814 339855 84 + . . scaffold681 WUBlastX LINE_RTE-X 340968 342008 152 + . . scaffold681 WUBlastX LINE_L1-Tx1 341910 342041 67 + . . scaffold681 WUBlastX LINE_RTE-X 342043 343026 496 + . . scaffold681 WUBlastX LINE_RTE-X 343148 343972 170 + . . scaffold681 TRF Tandem_Repeat 352222 352248 54 + . . scaffold681 WUBlastX LINE_RTE-X 360600 360938 33 - . . scaffold681 WUBlastX LINE_Jockey 360657 360938 38 - . . scaffold681 WUBlastX LINE_RTE-BovB 360720 360938 43 - . . scaffold681 WUBlastX LINE_Jockey 360810 360938 64 - . . scaffold681 WUBlastX LINE_RTE-X 360822 360977 38 - . . scaffold681 WUBlastX LINE_CR1-L2 360828 361004 23 - . . scaffold681 WUBlastX LINE_RTE-X 361039 361578 43 - . . scaffold681 WUBlastX LINE_RTE-X 361147 361578 100 - . . scaffold681 WUBlastX LINE_CR1-L2 361243 361599 116 - . . scaffold681 WUBlastX LINE_CR1-L2 361303 361599 142 - . . scaffold681 WUBlastX LINE_CR1-L2 361578 362390 122 - . . scaffold681 WUBlastX LINE_L2 361590 362552 60 - . . scaffold681 WUBlastX LINE_RTE-X 361617 362285 131 - . . scaffold681 WUBlastX LINE_Jockey 361659 361985 139 - . . scaffold681 WUBlastX LTR_Gypsy 370632 373403 945 - . . scaffold681 WUBlastX LTR_Gypsy 371985 373610 960 - . . scaffold681 WUBlastX LTR_Gypsy 373706 374296 199 - . . scaffold681 WUBlastX LTR_Gypsy 373871 374290 232 - . . scaffold681 WUBlastX LTR_Gypsy 373895 374368 107 - . . scaffold681 WUBlastX LTR_Ngaro 386139 386651 138 - . . scaffold681 WUBlastX LTR_Ngaro 386942 387121 64 - . . scaffold681 WUBlastX LTR_Ngaro 388790 389134 101 - . . scaffold681 WUBlastX LTR_Ngaro 389175 389435 82 - . . scaffold681 WUBlastX LTR_Ngaro 389175 389390 110 - . . scaffold681 WUBlastX LTR_Ngaro 389413 389568 43 - . . scaffold681 WUBlastX LTR_Gypsy 389841 389975 76 - . . scaffold681 WUBlastX LTR_Gypsy-Cigr 389841 389999 70 - . . scaffold681 WUBlastX LINE_Penelope 389974 390135 56 - . . scaffold681 WUBlastX LINE_Penelope 392447 392698 123 - . . scaffold681 TRF Tandem_Repeat 394241 394266 52 + . . scaffold681 TRF Tandem_Repeat 395780 395834 67 + . . scaffold681 TRF Tandem_Repeat 403209 403249 82 + . . scaffold681 TRF Tandem_Repeat 406794 406821 56 + . . scaffold682 GLEAN promoter 1 64 0.504136 + . ID=CGI_10003693; scaffold682 GLEAN mRNA 65 3871 0.504136 + . ID=CGI_10003693; scaffold682 TRF Tandem_Repeat 4044 4099 71 + . . scaffold682 TRF Tandem_Repeat 4048 4102 65 + . . scaffold682 WUBlastX LTR_DIRS 5918 6832 415 + . . scaffold682 TRF Tandem_Repeat 9489 9611 185 + . . scaffold682 TRF Tandem_Repeat 9499 9627 103 + . . scaffold682 TRF Tandem_Repeat 9745 10128 252 + . . scaffold682 TRF Tandem_Repeat 9801 10056 214 + . . scaffold682 TRF Tandem_Repeat 10807 10918 91 + . . scaffold682 WUBlastX LINE_L1-Tx1 19631 20251 188 + . . scaffold682 GLEAN promoter 24562 25561 1 + . ID=CGI_10003695; scaffold682 GLEAN mRNA 25562 33312 1 + . ID=CGI_10003695; scaffold682 TRF Tandem_Repeat 31246 31890 1039 + . . scaffold682 GLEAN mRNA 34307 39785 1 - . ID=CGI_10003696; scaffold682 GLEAN promoter 39786 40785 1 - . ID=CGI_10003696; scaffold682 GLEAN promoter 40427 41426 1 + . ID=CGI_10003697; scaffold682 GLEAN mRNA 41427 48100 1 + . ID=CGI_10003697; scaffold683 TRF Tandem_Repeat 4466 5161 786 + . . scaffold683 TRF Tandem_Repeat 6247 6294 96 + . . scaffold683 TRF Tandem_Repeat 8457 8506 100 + . . scaffold683 GLEAN promoter 8843 9842 0.999929 + . ID=CGI_10010352; scaffold683 GLEAN mRNA 9843 11042 0.999929 + . ID=CGI_10010352; scaffold683 TRF Tandem_Repeat 14741 14808 136 + . . scaffold683 TRF Tandem_Repeat 17303 17336 68 + . . scaffold683 TRF Tandem_Repeat 22430 22475 92 + . . scaffold683 TRF Tandem_Repeat 22845 22930 163 + . . scaffold683 TRF Tandem_Repeat 39157 39209 106 + . . scaffold683 TRF Tandem_Repeat 43812 43846 70 + . . scaffold683 GLEAN promoter 44288 45287 0.774623 + . ID=CGI_10010353; scaffold683 GLEAN mRNA 45288 51191 0.774623 + . ID=CGI_10010353; scaffold683 GLEAN mRNA 52402 54618 0.999949 - . ID=CGI_10010354; scaffold683 GLEAN promoter 54619 55618 0.999949 - . ID=CGI_10010354; scaffold683 TRF Tandem_Repeat 56407 56572 145 + . . scaffold683 TRF Tandem_Repeat 56571 56778 146 + . . scaffold683 TRF Tandem_Repeat 62568 62798 156 + . . scaffold683 GLEAN mRNA 69584 80249 0.967594 - . ID=CGI_10010355; scaffold683 GLEAN promoter 79657 80656 0.999674 + . ID=CGI_10010356; scaffold683 GLEAN promoter 80250 81249 0.967594 - . ID=CGI_10010355; scaffold683 GLEAN mRNA 80657 98109 0.999674 + . ID=CGI_10010356; scaffold683 WUBlastX LINE_RTE-X 81868 82083 36 - . . scaffold683 WUBlastX LINE_RTE-X 81994 82086 42 - . . scaffold683 WUBlastX LINE_RTE-X 82103 82888 198 - . . scaffold683 WUBlastX LINE_RTE-X 84158 84373 36 - . . scaffold683 WUBlastX LINE_RTE-X 84284 84376 42 - . . scaffold683 WUBlastX LINE_RTE-X 84393 85721 542 - . . scaffold683 WUBlastX LINE_RTE-X 85720 85908 69 - . . scaffold683 WUBlastX LINE_RTE-X 85726 85869 78 - . . scaffold683 WUBlastX LINE_RTE-X 85741 85854 83 - . . scaffold683 WUBlastX LINE_RTE-X 85741 85944 53 - . . scaffold683 TRF Tandem_Repeat 87133 87181 50 + . . scaffold683 GLEAN mRNA 89926 90693 1 - . ID=CGI_10010357; scaffold683 GLEAN promoter 90694 91693 1 - . ID=CGI_10010357; scaffold683 TRF Tandem_Repeat 98297 98365 129 + . . scaffold683 TRF Tandem_Repeat 103411 103455 90 + . . scaffold683 GLEAN promoter 109717 110716 0.988956 + . ID=CGI_10010358; scaffold683 GLEAN mRNA 110717 111508 0.988956 + . ID=CGI_10010358; scaffold683 TRF Tandem_Repeat 112050 112611 714 + . . scaffold683 TRF Tandem_Repeat 113184 113236 106 + . . scaffold683 WUBlastX LINE_L1-Tx1 114507 114881 40 - . . scaffold683 WUBlastX LINE_L1-Tx1 114941 115351 91 - . . scaffold683 WUBlastX LINE_L2 117891 118313 100 + . . scaffold683 TRF Tandem_Repeat 119509 119539 53 + . . scaffold683 GLEAN mRNA 122098 125143 0.593391 - . ID=CGI_10010359; scaffold683 GLEAN promoter 125144 126143 0.593391 - . ID=CGI_10010359; scaffold683 TRF Tandem_Repeat 131775 131813 53 + . . scaffold683 WUBlastX RC_Helitron 140358 140630 121 - . . scaffold683 WUBlastX RC_Helitron 140418 140642 143 - . . scaffold683 WUBlastX RC_Helitron 140635 142116 706 - . . scaffold683 WUBlastX RC_Helitron 142221 142256 20 - . . scaffold683 WUBlastX RC_Helitron 142253 143032 563 - . . scaffold683 WUBlastX RC_Helitron 143029 143982 533 - . . scaffold683 WUBlastX RC_Helitron 144355 144714 135 - . . scaffold683 WUBlastX RC_Helitron 144415 144771 158 - . . scaffold683 WUBlastX RC_Helitron 144415 144870 97 - . . scaffold683 TRF Tandem_Repeat 145138 145162 50 + . . scaffold683 TRF Tandem_Repeat 147423 147475 88 + . . scaffold683 WUBlastX LINE_CR1-L2 150910 151290 97 - . . scaffold683 WUBlastX LINE_L2 151278 151469 35 - . . scaffold683 WUBlastX LINE_L1 151320 151490 52 - . . scaffold683 TRF Tandem_Repeat 152702 152753 104 + . . scaffold683 TRF Tandem_Repeat 153190 153235 51 + . . scaffold683 GLEAN promoter 155724 156723 0.700222 + . ID=CGI_10010360; scaffold683 GLEAN mRNA 156724 197942 0.700222 + . ID=CGI_10010360; scaffold683 TRF Tandem_Repeat 157019 157055 65 + . . scaffold683 WUBlastX LINE_CR1 160130 160435 22 - . . scaffold683 WUBlastX LINE_Jockey 160190 160450 33 - . . scaffold683 WUBlastX LINE_CR1-L2 160265 160474 65 - . . scaffold683 WUBlastX LINE_CR1-L2 160271 160399 70 - . . scaffold683 WUBlastX LINE_CR1 160437 160850 61 - . . scaffold683 TRF Tandem_Repeat 176105 176617 190 + . . scaffold683 TRF Tandem_Repeat 176112 176610 536 + . . scaffold683 TRF Tandem_Repeat 176112 176610 563 + . . scaffold683 TRF Tandem_Repeat 176179 176566 261 + . . scaffold683 TRF Tandem_Repeat 184463 184494 55 + . . scaffold683 TRF Tandem_Repeat 184525 185647 1548 + . . scaffold683 TRF Tandem_Repeat 189898 190250 541 + . . scaffold683 WUBlastX LINE_RTE-X 193324 193476 23 - . . scaffold683 WUBlastX LINE_RTE-X 193580 193972 48 - . . scaffold683 WUBlastX LINE_RTE-X 193580 193912 54 - . . scaffold683 WUBlastX LTR_Ngaro 202843 203136 52 + . . scaffold683 WUBlastX LTR_Ngaro 203244 203543 74 + . . scaffold683 WUBlastX LTR_Ngaro 203684 203836 54 + . . scaffold683 WUBlastX LTR_DIRS 208353 208781 285 - . . scaffold683 WUBlastX LTR_DIRS 208765 209013 150 - . . scaffold683 WUBlastX LTR_DIRS 208968 210335 879 - . . scaffold683 WUBlastX LTR_DIRS 210312 210986 284 - . . scaffold683 TRF Tandem_Repeat 214014 214806 1205 + . . scaffold683 WUBlastX DNA_hAT-Hobo 220883 221146 80 - . . scaffold683 WUBlastX DNA_hAT-Ac 220928 221209 125 - . . scaffold683 WUBlastX DNA_hAT-Ac 220937 221167 126 - . . scaffold683 WUBlastX DNA_hAT-Ac 221220 221939 150 - . . scaffold683 WUBlastX DNA_hAT-Tol2 221868 222419 104 - . . scaffold683 WUBlastX DNA_hAT-Ac 222018 222380 153 - . . scaffold683 TRF Tandem_Repeat 228944 228983 53 + . . scaffold683 GLEAN promoter 229180 230179 0.753786 + . ID=CGI_10010361; scaffold683 TRF Tandem_Repeat 229525 229563 60 + . . scaffold683 GLEAN mRNA 230180 239884 0.753786 + . ID=CGI_10010361; scaffold683 TRF Tandem_Repeat 237901 238252 332 + . . scaffold683 TRF Tandem_Repeat 238271 238460 147 + . . scaffold683 WUBlastX DNA_TcMar-Tc1 242193 242423 102 - . . scaffold683 WUBlastX DNA_TcMar-Tc1 242392 242592 77 - . . scaffold683 WUBlastX DNA_TcMar-Tc1 242401 242640 71 - . . scaffold683 GLEAN promoter 251917 252916 0.727757 + . ID=CGI_10010362; scaffold683 GLEAN mRNA 252917 261257 0.727757 + . ID=CGI_10010362; scaffold683 TRF Tandem_Repeat 255543 255577 61 + . . scaffold685 TRF Tandem_Repeat 511 541 62 + . . scaffold685 GLEAN promoter 1337 2336 0.778478 + . ID=CGI_10004488; scaffold685 GLEAN mRNA 2337 12650 0.778478 + . ID=CGI_10004488; scaffold685 TRF Tandem_Repeat 6081 6135 103 + . . scaffold685 GLEAN mRNA 13626 20094 1 - . ID=CGI_10004489; scaffold685 GLEAN promoter 20095 21094 1 - . ID=CGI_10004489; scaffold685 GLEAN mRNA 20953 28317 0.729071 - . ID=CGI_10004490; scaffold685 GLEAN promoter 28318 29317 0.729071 - . ID=CGI_10004490; scaffold685 TRF Tandem_Repeat 33304 33341 67 + . . scaffold685 TRF Tandem_Repeat 36694 36741 96 + . . scaffold685 TRF Tandem_Repeat 36824 36879 112 + . . scaffold685 TRF Tandem_Repeat 37164 37251 113 + . . scaffold685 WUBlastX LINE_RTE-X 39239 39964 137 - . . scaffold685 TRF Tandem_Repeat 40877 40935 56 + . . scaffold685 WUBlastX LINE_RTE-X 41171 41359 53 + . . scaffold685 WUBlastX LINE_RTE-X 41270 41380 22 + . . scaffold685 WUBlastX LINE_RTE-X 41464 41541 27 + . . scaffold685 WUBlastX LINE_RTE-X 41464 41586 24 + . . scaffold685 WUBlastX LINE_RTE-X 41881 42123 67 + . . scaffold685 WUBlastX LINE_RTE-X 41884 42039 73 + . . scaffold685 TRF Tandem_Repeat 47881 48627 1192 + . . scaffold685 TRF Tandem_Repeat 48797 48850 58 + . . scaffold685 TRF Tandem_Repeat 48800 48845 58 + . . scaffold685 GLEAN promoter 52096 53095 1 + . ID=CGI_10004491; scaffold685 WUBlastX LINE_RTE-X 52579 52983 80 - . . scaffold685 WUBlastX LINE_RTE-X 52660 52998 192 - . . scaffold685 WUBlastX LINE_RTE-X 52995 53186 37 - . . scaffold685 GLEAN mRNA 53096 59872 1 + . ID=CGI_10004491; scaffold685 TRF Tandem_Repeat 62040 62080 61 + . . scaffold685 TRF Tandem_Repeat 62040 62080 75 + . . scaffold685 TRF Tandem_Repeat 62571 62600 60 + . . scaffold685 GLEAN promoter 64989 65988 0.374463 + . ID=CGI_10004492; scaffold685 GLEAN mRNA 65989 66832 0.374463 + . ID=CGI_10004492; scaffold685 TRF Tandem_Repeat 78810 78845 54 + . . scaffold685 WUBlastX LTR_DIRS 79022 79336 58 + . . scaffold685 WUBlastX LTR_Gypsy 79784 79987 82 + . . scaffold685 WUBlastX LTR_Gypsy 79927 80280 116 + . . scaffold685 WUBlastX LTR_Pao 80816 81166 27 + . . scaffold685 WUBlastX LTR_Pao 80891 82411 113 + . . scaffold685 WUBlastX LTR_Pao 81152 82417 117 + . . scaffold685 WUBlastX LTR_Pao 81173 81637 132 + . . scaffold685 GLEAN promoter 82408 83407 1 + . ID=CGI_10004493; scaffold685 GLEAN mRNA 83408 84482 1 + . ID=CGI_10004493; scaffold685 WUBlastX DNA_Kolobok 84267 84458 69 + . . scaffold685 WUBlastX DNA_Kolobok 84306 84449 73 + . . scaffold685 WUBlastX DNA_Kolobok 84865 85035 83 - . . scaffold685 WUBlastX DNA_Kolobok 85154 85315 68 - . . scaffold685 WUBlastX DNA_Kolobok 85154 85354 54 - . . scaffold685 WUBlastX DNA_Kolobok 85458 85682 86 - . . scaffold685 WUBlastX DNA_Kolobok 85888 86061 106 - . . scaffold685 WUBlastX DNA_Kolobok 86282 87070 132 - . . scaffold685 WUBlastX DNA_P 88835 89125 95 - . . scaffold685 TRF Tandem_Repeat 90967 91003 65 + . . scaffold685 TRF Tandem_Repeat 90967 91006 53 + . . scaffold685 GLEAN mRNA 92262 93264 0.796901 - . ID=CGI_10004494; scaffold685 GLEAN promoter 93265 94264 0.796901 - . ID=CGI_10004494; scaffold686 GLEAN mRNA 377 5602 0.998023 - . ID=CGI_10004460; scaffold686 WUBlastX LINE_CR1-L2 2521 2796 108 - . . scaffold686 WUBlastX LINE_CR1-L2 2581 2892 129 - . . scaffold686 WUBlastX LINE_CR1-L2 2584 2964 93 - . . scaffold686 TRF Tandem_Repeat 3807 3860 67 + . . scaffold686 TRF Tandem_Repeat 3812 3857 67 + . . scaffold686 TRF Tandem_Repeat 4144 4474 457 + . . scaffold686 TRF Tandem_Repeat 4144 4542 460 + . . scaffold686 TRF Tandem_Repeat 4186 4517 473 + . . scaffold686 GLEAN promoter 5603 6602 0.998023 - . ID=CGI_10004460; scaffold686 TRF Tandem_Repeat 6094 6420 398 + . . scaffold686 TRF Tandem_Repeat 7358 8329 1482 + . . scaffold686 TRF Tandem_Repeat 8499 8541 50 + . . scaffold686 GLEAN mRNA 9292 17710 0.993892 - . ID=CGI_10004461; scaffold686 TRF Tandem_Repeat 9588 9677 153 + . . scaffold686 WUBlastX DNA_TcMar-Tc1 12223 12687 244 + . . scaffold686 WUBlastX LINE_L1-Tx1 15977 16336 39 - . . scaffold686 GLEAN promoter 17711 18710 0.993892 - . ID=CGI_10004461; scaffold686 TRF Tandem_Repeat 19841 19888 96 + . . scaffold686 GLEAN mRNA 23498 37370 0.50665 - . ID=CGI_10004462; scaffold686 WUBlastX DNA_PiggyBac 31889 32035 32 + . . scaffold686 WUBlastX DNA_PiggyBac 32641 32751 38 + . . scaffold686 WUBlastX DNA_PiggyBac 32662 32751 52 + . . scaffold686 WUBlastX DNA_PiggyBac 32956 33309 54 + . . scaffold686 GLEAN promoter 37371 38370 0.50665 - . ID=CGI_10004462; scaffold686 GLEAN mRNA 42725 45557 0.999968 - . ID=CGI_10004463; scaffold686 GLEAN promoter 45558 46557 0.999968 - . ID=CGI_10004463; scaffold686 WUBlastX DNA_Harbinger 53055 53225 118 - . . scaffold686 WUBlastX DNA_Harbinger 53120 53713 139 - . . scaffold686 WUBlastX LTR_Ngaro 53946 54095 69 + . . scaffold686 WUBlastX LTR_Ngaro 54249 54542 60 + . . scaffold686 WUBlastX LTR_Ngaro 54584 54904 59 + . . scaffold686 GLEAN promoter 72956 73955 0.618186 + . ID=CGI_10004465; scaffold686 GLEAN mRNA 73442 74386 0.95575 - . ID=CGI_10004464; scaffold686 GLEAN mRNA 73956 74114 0.618186 + . ID=CGI_10004465; scaffold686 GLEAN promoter 74387 75386 0.95575 - . ID=CGI_10004464; scaffold686 GLEAN mRNA 80072 84929 0.927367 - . ID=CGI_10004466; scaffold686 TRF Tandem_Repeat 82610 82662 97 + . . scaffold686 GLEAN promoter 84930 85929 0.927367 - . ID=CGI_10004466; scaffold686 TRF Tandem_Repeat 98083 98121 78 + . . scaffold687 GLEAN mRNA 64 7441 1 - . ID=CGI_10001245; scaffold687 GLEAN promoter 7442 8441 1 - . ID=CGI_10001245; scaffold689 WUBlastX DNA_Academ 8490 8762 38 + . . scaffold689 WUBlastX LTR_Gypsy 30177 30668 161 - . . scaffold689 WUBlastX LTR_Gypsy 30267 30695 219 - . . scaffold689 WUBlastX LTR_Gypsy 30635 31549 712 - . . scaffold689 WUBlastX LTR_Gypsy 30638 31765 297 - . . scaffold689 WUBlastX LTR_Gypsy 31725 32015 79 - . . scaffold689 WUBlastX LTR_Gypsy 31758 32093 30 - . . scaffold689 WUBlastX LTR_Pao 50205 54206 2849 - . . scaffold689 WUBlastX LTR_Pao 50244 55244 2183 - . . scaffold689 WUBlastX LTR_Pao 53514 55811 947 - . . scaffold689 TRF Tandem_Repeat 73622 73661 80 + . . scaffold689 GLEAN mRNA 76600 79272 1 - . ID=CGI_10014822; scaffold689 GLEAN promoter 79273 80272 1 - . ID=CGI_10014822; scaffold689 WUBlastX LINE_RTE-BovB 82214 82441 41 + . . scaffold689 GLEAN mRNA 86490 99710 0.836195 - . ID=CGI_10014823; scaffold689 GLEAN promoter 99711 100710 0.836195 - . ID=CGI_10014823; scaffold689 WUBlastX LINE_RTE-X 117820 118014 50 - . . scaffold689 WUBlastX LINE_RTE-X 117856 118038 66 - . . scaffold689 GLEAN mRNA 118031 118420 1 - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 118058 118435 149 - . . scaffold689 GLEAN promoter 118421 119420 1 - . ID=CGI_10014824; scaffold689 WUBlastX LINE_RTE-X 118458 118613 107 - . . scaffold689 TRF Tandem_Repeat 123267 124415 1683 + . . scaffold689 WUBlastX LINE_L1-Tx1 129046 129882 172 + . . scaffold689 WUBlastX LINE_L1 129839 130150 222 + . . scaffold689 WUBlastX LINE_L1 130161 130250 49 + . . scaffold689 WUBlastX LINE_L1 130246 130419 29 + . . scaffold689 WUBlastX LINE_L1-Tx1 130514 131560 85 + . . scaffold689 TRF Tandem_Repeat 134238 134280 68 + . . scaffold689 TRF Tandem_Repeat 135486 135518 66 + . . scaffold689 TRF Tandem_Repeat 149661 149721 122 + . . scaffold689 GLEAN mRNA 154972 158170 1 - . ID=CGI_10014825; scaffold689 GLEAN promoter 158171 159170 1 - . ID=CGI_10014825; scaffold689 GLEAN mRNA 162763 181677 0.999 - . ID=CGI_10014826; scaffold689 WUBlastX LINE_RTE-BovB 166225 166281 24 + . . scaffold689 WUBlastX LINE_CR1 166963 167013 25 + . . scaffold689 TRF Tandem_Repeat 167047 167108 124 + . . scaffold689 WUBlastX LINE_RTE-X 167370 169031 703 + . . scaffold689 WUBlastX LINE_RTE-X 168686 169219 66 + . . scaffold689 WUBlastX LINE_RTE-X 169222 169749 71 + . . scaffold689 TRF Tandem_Repeat 171398 171486 108 + . . scaffold689 GLEAN promoter 181678 182677 0.999 - . ID=CGI_10014826; scaffold689 TRF Tandem_Repeat 186312 187797 1562 + . . scaffold689 TRF Tandem_Repeat 195585 195637 81 + . . scaffold689 TRF Tandem_Repeat 198270 198313 88 + . . scaffold689 TRF Tandem_Repeat 203746 203777 64 + . . scaffold689 TRF Tandem_Repeat 204964 205058 82 + . . scaffold689 TRF Tandem_Repeat 204964 205056 86 + . . scaffold689 TRF Tandem_Repeat 206360 206690 421 + . . scaffold689 TRF Tandem_Repeat 206453 206675 107 + . . scaffold689 TRF Tandem_Repeat 206467 206653 54 + . . scaffold689 GLEAN mRNA 207520 210620 0.999612 - . ID=CGI_10014827; scaffold689 GLEAN promoter 210621 211620 0.999612 - . ID=CGI_10014827; scaffold689 GLEAN promoter 221043 222042 0.82852 + . ID=CGI_10014828; scaffold689 GLEAN mRNA 222043 222468 0.82852 + . ID=CGI_10014828; scaffold689 WUBlastX LINE_CR1-L2 226327 226539 66 - . . scaffold689 WUBlastX LINE_CR1-L2 226547 227041 63 - . . scaffold689 TRF Tandem_Repeat 231773 231800 56 + . . scaffold689 TRF Tandem_Repeat 240924 240959 72 + . . scaffold689 WUBlastX LINE_L1-Tx1 258781 260112 67 - . . scaffold689 WUBlastX LINE_L1-Tx1 258997 260127 200 - . . scaffold689 WUBlastX LINE_L1-Tx1 260160 261566 587 - . . scaffold689 TRF Tandem_Repeat 261666 261707 84 + . . scaffold689 GLEAN mRNA 268555 270351 0.998685 - . ID=CGI_10014829; scaffold689 WUBlastX LINE_R2-Hero 269819 270187 203 + . . scaffold689 WUBlastX LINE_R2-Hero 269912 270187 219 + . . scaffold689 GLEAN promoter 270352 271351 0.998685 - . ID=CGI_10014829; scaffold689 TRF Tandem_Repeat 281046 281084 78 + . . scaffold689 WUBlastX LINE_RTE-X 285377 285769 185 - . . scaffold689 WUBlastX LINE_RTE-X 285781 286011 111 - . . scaffold689 WUBlastX LINE_CR1 285952 286026 21 - . . scaffold689 WUBlastX LINE_RTE-X 286029 286349 115 - . . scaffold689 WUBlastX LINE_RTE-BovB 286035 286490 20 - . . scaffold689 WUBlastX LINE_RTE-X 286754 286825 21 - . . scaffold689 GLEAN mRNA 289301 292410 0.998919 - . ID=CGI_10014830; scaffold689 GLEAN promoter 292411 293410 0.998919 - . ID=CGI_10014830; scaffold689 TRF Tandem_Repeat 292710 292753 61 + . . scaffold689 GLEAN mRNA 335137 371615 0.991732 - . ID=CGI_10014831; scaffold689 TRF Tandem_Repeat 345979 346044 132 + . . scaffold689 TRF Tandem_Repeat 351800 351851 77 + . . scaffold689 WUBlastX LTR_Gypsy 354999 355964 20 + . . scaffold689 WUBlastX LTR_Gypsy 355173 355958 392 + . . scaffold689 WUBlastX LTR_Gypsy 355254 356144 88 + . . scaffold689 WUBlastX LTR_Gypsy 356234 357646 939 + . . scaffold689 WUBlastX LTR_Gypsy 357020 357970 249 + . . scaffold689 WUBlastX LTR_Gypsy-Cigr 357056 357790 335 + . . scaffold689 TRF Tandem_Repeat 365189 366097 1606 + . . scaffold689 GLEAN promoter 371616 372615 0.991732 - . ID=CGI_10014831; scaffold689 TRF Tandem_Repeat 373721 373753 57 + . . scaffold689 GLEAN mRNA 374882 388707 0.9993 - . ID=CGI_10014832; scaffold689 TRF Tandem_Repeat 381227 381390 160 + . . scaffold689 TRF Tandem_Repeat 381305 381391 61 + . . scaffold689 TRF Tandem_Repeat 381310 381647 289 + . . scaffold689 TRF Tandem_Repeat 381310 381622 291 + . . scaffold689 TRF Tandem_Repeat 387953 388205 389 + . . scaffold689 GLEAN promoter 388708 389707 0.9993 - . ID=CGI_10014832; scaffold689 GLEAN promoter 390905 391904 1 + . ID=CGI_10014833; scaffold689 GLEAN mRNA 391905 393348 1 + . ID=CGI_10014833; scaffold689 TRF Tandem_Repeat 394822 394863 84 + . . scaffold689 GLEAN promoter 408276 409275 0.544852 + . ID=CGI_10014834; scaffold689 TRF Tandem_Repeat 408973 409004 64 + . . scaffold689 GLEAN mRNA 409276 411732 0.544852 + . ID=CGI_10014834; scaffold693 GLEAN mRNA 1018 11877 0.999949 - . ID=CGI_10000930; scaffold693 TRF Tandem_Repeat 8597 8655 118 + . . scaffold693 WUBlastX LINE_RTE-BovB 9933 9971 25 + . . scaffold693 WUBlastX LINE_RTE-BovB 10046 10360 21 + . . scaffold693 WUBlastX LINE_RTE-BovB 10157 10423 29 + . . scaffold693 WUBlastX LINE_RTE-BovB 10175 10360 55 + . . scaffold693 WUBlastX LINE_RTE-BovB 10491 10583 37 + . . scaffold693 WUBlastX LINE_RTE-BovB 10974 11165 37 + . . scaffold693 WUBlastX LINE_RTE-BovB 10974 11105 54 + . . scaffold693 GLEAN promoter 11878 12183 0.999949 - . ID=CGI_10000930; scaffold694 WUBlastX DNA_TcMar-Tc1 259 567 107 - . . scaffold694 WUBlastX DNA_TcMar-Tc1 259 519 154 - . . scaffold694 TRF Tandem_Repeat 9745 9799 65 + . . scaffold694 TRF Tandem_Repeat 9748 9803 71 + . . scaffold694 TRF Tandem_Repeat 16177 16203 54 + . . scaffold694 GLEAN promoter 16287 17286 0.741618 + . ID=CGI_10008108; scaffold694 GLEAN mRNA 17287 54226 0.741618 + . ID=CGI_10008108; scaffold694 TRF Tandem_Repeat 23753 23805 74 + . . scaffold694 TRF Tandem_Repeat 35106 35151 92 + . . scaffold694 TRF Tandem_Repeat 40061 40110 100 + . . scaffold694 TRF Tandem_Repeat 42323 42370 96 + . . scaffold694 TRF Tandem_Repeat 52080 52148 129 + . . scaffold694 TRF Tandem_Repeat 55244 55491 63 + . . scaffold694 TRF Tandem_Repeat 55245 55310 132 + . . scaffold694 TRF Tandem_Repeat 55247 55455 59 + . . scaffold694 TRF Tandem_Repeat 55257 55373 71 + . . scaffold694 TRF Tandem_Repeat 55335 55491 154 + . . scaffold694 TRF Tandem_Repeat 55411 55491 55 + . . scaffold694 TRF Tandem_Repeat 75383 76290 1219 + . . scaffold694 TRF Tandem_Repeat 96186 96925 1001 + . . scaffold694 TRF Tandem_Repeat 100000 100033 59 + . . scaffold694 TRF Tandem_Repeat 108589 108672 62 + . . scaffold694 TRF Tandem_Repeat 122889 122918 60 + . . scaffold694 TRF Tandem_Repeat 125074 125110 51 + . . scaffold694 GLEAN promoter 126285 127284 0.544847 + . ID=CGI_10008109; scaffold694 GLEAN mRNA 127285 137031 0.544847 + . ID=CGI_10008109; scaffold694 TRF Tandem_Repeat 130740 130787 96 + . . scaffold694 TRF Tandem_Repeat 131743 132578 1090 + . . scaffold694 TRF Tandem_Repeat 140029 140069 82 + . . scaffold694 TRF Tandem_Repeat 141051 141077 54 + . . scaffold694 TRF Tandem_Repeat 141217 141241 50 + . . scaffold694 GLEAN promoter 143374 144373 0.806778 + . ID=CGI_10008110; scaffold694 GLEAN mRNA 144374 152955 0.806778 + . ID=CGI_10008110; scaffold694 TRF Tandem_Repeat 150682 150706 50 + . . scaffold694 TRF Tandem_Repeat 150839 150954 117 + . . scaffold694 GLEAN promoter 178698 179697 1 + . ID=CGI_10008111; scaffold694 GLEAN mRNA 179698 193167 1 + . ID=CGI_10008111; scaffold694 TRF Tandem_Repeat 197335 197669 339 + . . scaffold694 TRF Tandem_Repeat 197335 197669 230 + . . scaffold694 TRF Tandem_Repeat 197369 197680 279 + . . scaffold695 WUBlastX LINE_Penelope 761 1330 27 + . . scaffold695 WUBlastX LINE_Penelope 782 1222 109 + . . scaffold695 WUBlastX DNA_Harbinger 2949 3149 90 + . . scaffold695 GLEAN promoter 3125 4124 0.716645 + . ID=CGI_10023266; scaffold695 WUBlastX DNA_Harbinger 3798 3905 30 + . . scaffold695 GLEAN mRNA 4125 9096 0.716645 + . ID=CGI_10023266; scaffold695 TRF Tandem_Repeat 6935 7005 142 + . . scaffold695 WUBlastX DNA_Harbinger 7118 7453 178 - . . scaffold695 WUBlastX DNA_Harbinger 8541 8759 69 - . . scaffold695 WUBlastX DNA_TcMar-Fot1 11099 11272 46 - . . scaffold695 WUBlastX DNA_TcMar-Fot1 11430 11792 37 - . . scaffold695 WUBlastX DNA_TcMar-Fot1 15732 15893 69 - . . scaffold695 TRF Tandem_Repeat 18960 18989 51 + . . scaffold695 TRF Tandem_Repeat 52012 52047 72 + . . scaffold695 TRF Tandem_Repeat 57476 57519 79 + . . scaffold695 TRF Tandem_Repeat 58428 58469 59 + . . scaffold695 TRF Tandem_Repeat 61899 61953 110 + . . scaffold695 TRF Tandem_Repeat 66435 66503 138 + . . scaffold695 GLEAN mRNA 79693 103765 0.999218 - . ID=CGI_10023267; scaffold695 TRF Tandem_Repeat 82445 83156 993 + . . scaffold695 TRF Tandem_Repeat 87652 87689 76 + . . scaffold695 WUBlastX LINE_L1-Tx1 88595 88651 20 - . . scaffold695 WUBlastX LINE_L1-Tx1 88604 88663 26 - . . scaffold695 WUBlastX LINE_L1-Tx1 88607 88648 27 - . . scaffold695 WUBlastX LINE_L1 88747 88845 22 - . . scaffold695 WUBlastX LINE_L1-Tx1 89024 89170 31 - . . scaffold695 WUBlastX LINE_L1-Tx1 89200 89310 29 - . . scaffold695 WUBlastX LINE_L1 89242 89325 28 - . . scaffold695 WUBlastX LINE_L1-Tx1 89331 89879 87 - . . scaffold695 WUBlastX LINE_L1-Tx1 89553 89888 173 - . . scaffold695 WUBlastX LINE_L1-Tx1 89729 89935 56 - . . scaffold695 WUBlastX LINE_L1-Tx1 89935 90108 47 - . . scaffold695 WUBlastX LINE_L1-Tx1 89935 90057 55 - . . scaffold695 WUBlastX LINE_L1 90259 90453 26 - . . scaffold695 WUBlastX LINE_L1 90325 90444 37 - . . scaffold695 WUBlastX LINE_L1-Tx1 90382 90495 40 - . . scaffold695 WUBlastX LINE_L1 90509 90733 78 - . . scaffold695 WUBlastX LINE_L1 90554 90781 57 - . . scaffold695 WUBlastX LINE_L1 90554 90730 103 - . . scaffold695 WUBlastX LINE_L1 90590 90736 104 - . . scaffold695 TRF Tandem_Repeat 90801 90854 64 + . . scaffold695 TRF Tandem_Repeat 90813 90854 57 + . . scaffold695 WUBlastX LINE_L1 93286 93399 25 - . . scaffold695 WUBlastX LINE_L1-Tx1 93396 93689 36 - . . scaffold695 WUBlastX LINE_L1-Tx1 93658 93870 56 - . . scaffold695 WUBlastX LINE_L1-Tx1 93706 93870 83 - . . scaffold695 WUBlastX LINE_L1-Tx1 97836 98411 42 - . . scaffold695 WUBlastX LINE_L1-Tx1 97923 98375 120 - . . scaffold695 WUBlastX LINE_L1 97992 98477 66 - . . scaffold695 WUBlastX LINE_L1-Tx1 97998 98387 153 - . . scaffold695 WUBlastX LINE_L1-Tx1 98441 98563 39 - . . scaffold695 WUBlastX LINE_L1 98923 99558 114 - . . scaffold695 GLEAN promoter 103766 104765 0.999218 - . ID=CGI_10023267; scaffold695 TRF Tandem_Repeat 105172 105216 90 + . . scaffold695 TRF Tandem_Repeat 107095 107261 253 + . . scaffold695 TRF Tandem_Repeat 107987 108184 166 + . . scaffold695 TRF Tandem_Repeat 108905 109043 233 + . . scaffold695 TRF Tandem_Repeat 109770 109826 105 + . . scaffold695 TRF Tandem_Repeat 109979 110009 62 + . . scaffold695 TRF Tandem_Repeat 114282 114447 264 + . . scaffold695 TRF Tandem_Repeat 115533 115622 76 + . . scaffold695 GLEAN mRNA 130224 137002 0.863497 - . ID=CGI_10023268; scaffold695 TRF Tandem_Repeat 134490 134551 65 + . . scaffold695 GLEAN promoter 137003 138002 0.863497 - . ID=CGI_10023268; scaffold695 GLEAN mRNA 141733 150450 0.999882 - . ID=CGI_10023269; scaffold695 TRF Tandem_Repeat 142281 142367 81 + . . scaffold695 GLEAN promoter 150451 151450 0.999882 - . ID=CGI_10023269; scaffold695 TRF Tandem_Repeat 155201 155267 127 + . . scaffold695 GLEAN mRNA 155982 158437 0.999933 - . ID=CGI_10023270; scaffold695 TRF Tandem_Repeat 157085 158437 1471 + . . scaffold695 TRF Tandem_Repeat 157085 158437 1589 + . . scaffold695 TRF Tandem_Repeat 157085 158437 1422 + . . scaffold695 GLEAN promoter 158438 159437 0.999933 - . ID=CGI_10023270; scaffold695 GLEAN mRNA 158521 171767 1 - . ID=CGI_10023271; scaffold695 TRF Tandem_Repeat 163210 163279 140 + . . scaffold695 TRF Tandem_Repeat 167888 168769 978 + . . scaffold695 TRF Tandem_Repeat 171487 171539 88 + . . scaffold695 GLEAN promoter 171768 172767 1 - . ID=CGI_10023271; scaffold695 TRF Tandem_Repeat 172729 172822 55 + . . scaffold695 TRF Tandem_Repeat 172785 172824 57 + . . scaffold695 TRF Tandem_Repeat 172985 173021 74 + . . scaffold695 GLEAN mRNA 180737 182687 0.734331 - . ID=CGI_10023272; scaffold695 GLEAN promoter 182688 183687 0.734331 - . ID=CGI_10023272; scaffold695 TRF Tandem_Repeat 185748 185840 114 + . . scaffold695 TRF Tandem_Repeat 188618 188655 76 + . . scaffold695 GLEAN mRNA 190154 195031 0.999997 - . ID=CGI_10023273; scaffold695 TRF Tandem_Repeat 192872 192938 134 + . . scaffold695 GLEAN promoter 195032 196031 0.999997 - . ID=CGI_10023273; scaffold695 TRF Tandem_Repeat 195144 195199 112 + . . scaffold695 TRF Tandem_Repeat 195226 195257 64 + . . scaffold695 TRF Tandem_Repeat 201862 201905 88 + . . scaffold695 GLEAN mRNA 203903 208633 0.999997 - . ID=CGI_10023274; scaffold695 GLEAN promoter 208634 209633 0.999997 - . ID=CGI_10023274; scaffold695 WUBlastX LINE_L1-Tx1 214628 214714 27 - . . scaffold695 WUBlastX LINE_L1-Tx1 214734 214886 27 - . . scaffold695 WUBlastX LINE_RTE-BovB 215099 215293 71 + . . scaffold695 WUBlastX LINE_L1-Tx1 215447 215617 26 - . . scaffold695 WUBlastX LINE_L1 215610 215669 35 - . . scaffold695 TRF Tandem_Repeat 223363 223405 86 + . . scaffold695 WUBlastX LINE_Penelope 225009 225206 41 + . . scaffold695 GLEAN mRNA 226242 226808 0.990832 - . ID=CGI_10023275; scaffold695 GLEAN promoter 226809 227808 0.990832 - . ID=CGI_10023275; scaffold695 TRF Tandem_Repeat 237164 237273 79 + . . scaffold695 WUBlastX DNA_Sola 239098 239502 134 - . . scaffold695 WUBlastX DNA_Sola 240045 240209 50 - . . scaffold695 WUBlastX DNA_Sola 240288 240434 31 - . . scaffold695 GLEAN mRNA 240354 243330 0.990093 - . ID=CGI_10023276; scaffold695 WUBlastX DNA_Sola 240416 240517 34 - . . scaffold695 TRF Tandem_Repeat 241837 241880 88 + . . scaffold695 GLEAN promoter 243331 244330 0.990093 - . ID=CGI_10023276; scaffold695 TRF Tandem_Repeat 247204 247276 146 + . . scaffold695 WUBlastX LINE_L2 248146 248358 43 - . . scaffold695 TRF Tandem_Repeat 250876 250937 115 + . . scaffold695 GLEAN promoter 253759 254758 0.97665 + . ID=CGI_10023277; scaffold695 GLEAN mRNA 254759 255658 0.97665 + . ID=CGI_10023277; scaffold695 TRF Tandem_Repeat 259465 259503 78 + . . scaffold695 GLEAN promoter 260208 261207 0.621442 + . ID=CGI_10023278; scaffold695 GLEAN mRNA 261208 262413 0.621442 + . ID=CGI_10023278; scaffold695 TRF Tandem_Repeat 272307 272424 101 + . . scaffold695 WUBlastX LTR_DIRS? 281250 282062 522 - . . scaffold695 TRF Tandem_Repeat 285861 286006 143 + . . scaffold695 TRF Tandem_Repeat 286794 286840 67 + . . scaffold695 GLEAN mRNA 287453 289821 1 - . ID=CGI_10023280; scaffold695 TRF Tandem_Repeat 287732 287764 57 + . . scaffold695 GLEAN promoter 289822 290821 1 - . ID=CGI_10023280; scaffold695 GLEAN mRNA 290841 338874 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 295700 295737 76 + . . scaffold695 TRF Tandem_Repeat 302675 303104 743 + . . scaffold695 TRF Tandem_Repeat 309470 309884 303 + . . scaffold695 TRF Tandem_Repeat 309470 309884 369 + . . scaffold695 TRF Tandem_Repeat 310249 310917 709 + . . scaffold695 TRF Tandem_Repeat 310249 310849 587 + . . scaffold695 TRF Tandem_Repeat 310254 310849 524 + . . scaffold695 TRF Tandem_Repeat 314668 315327 232 + . . scaffold695 TRF Tandem_Repeat 314671 315354 328 + . . scaffold695 TRF Tandem_Repeat 314672 315322 144 + . . scaffold695 TRF Tandem_Repeat 315804 316329 270 + . . scaffold695 TRF Tandem_Repeat 317752 317981 135 + . . scaffold695 TRF Tandem_Repeat 317777 318014 190 + . . scaffold695 TRF Tandem_Repeat 317785 318323 426 + . . scaffold695 TRF Tandem_Repeat 318751 318963 124 + . . scaffold695 TRF Tandem_Repeat 318991 319328 220 + . . scaffold695 TRF Tandem_Repeat 319144 319568 284 + . . scaffold695 TRF Tandem_Repeat 327813 327864 104 + . . scaffold695 GLEAN promoter 338875 339874 0.701607 - . ID=CGI_10023281; scaffold695 TRF Tandem_Repeat 342048 342281 195 + . . scaffold695 WUBlastX LINE_RTE-BovB 342498 342851 28 + . . scaffold695 WUBlastX LINE_RTE-X 342639 342797 31 + . . scaffold695 WUBlastX LINE_RTE-X 342836 344350 726 + . . scaffold695 WUBlastX LINE_RTE-X 344347 344496 65 + . . scaffold695 WUBlastX LINE_RTE-X 344529 344909 72 + . . scaffold695 WUBlastX LINE_RTE-X 344604 345005 57 + . . scaffold695 WUBlastX LINE_RTE-X 344700 345068 38 + . . scaffold695 WUBlastX LINE_CR1 346897 347172 63 + . . scaffold695 WUBlastX LINE_Penelope 348035 348586 102 - . . scaffold695 WUBlastX LINE_Penelope 348365 348661 51 - . . scaffold695 WUBlastX LTR_Gypsy 349585 349998 81 + . . scaffold695 WUBlastX LTR_Gypsy 349666 350061 126 + . . scaffold695 WUBlastX LTR_Gypsy 350054 350428 129 + . . scaffold695 WUBlastX LTR_Gypsy 350118 350267 143 + . . scaffold695 WUBlastX LTR_Gypsy 350273 350848 56 + . . scaffold695 WUBlastX LTR_Gypsy 350276 350479 79 + . . scaffold695 WUBlastX LTR_Gypsy 350630 350866 66 + . . scaffold695 GLEAN promoter 350654 351653 0.603805 + . ID=CGI_10023282; scaffold695 GLEAN mRNA 351654 351968 0.603805 + . ID=CGI_10023282; scaffold695 WUBlastX LTR_Gypsy 364460 364909 85 - . . scaffold695 WUBlastX LTR_Gypsy-Cigr 364733 364906 107 - . . scaffold695 WUBlastX LINE_CR1 365738 365815 23 + . . scaffold695 WUBlastX LINE_CR1 365954 366079 66 + . . scaffold695 WUBlastX DNA_TcMar-m44 366984 367328 44 + . . scaffold695 WUBlastX DNA_TcMar-M44 367092 367328 53 + . . scaffold695 WUBlastX LINE_CR1 367377 367457 38 - . . scaffold695 WUBlastX LINE_CR1 367445 367579 47 - . . scaffold695 GLEAN promoter 368235 369234 0.976036 + . ID=CGI_10023283; scaffold695 GLEAN mRNA 369235 369510 0.976036 + . ID=CGI_10023283; scaffold695 WUBlastX LTR_Gypsy 370280 370855 114 - . . scaffold695 WUBlastX LTR_Gypsy-Cigr 370397 370846 285 - . . scaffold695 WUBlastX LTR_Gypsy-Cigr 370460 370915 213 - . . scaffold695 WUBlastX LTR_Gypsy 370723 371115 68 - . . scaffold695 WUBlastX LTR_Gypsy 370843 370968 89 - . . scaffold695 WUBlastX LTR_Gypsy 370843 371016 83 - . . scaffold695 WUBlastX LTR_Gypsy 371069 371167 21 - . . scaffold695 WUBlastX LTR_Foamy 372616 372939 81 - . . scaffold695 WUBlastX LTR_Gypsy 372682 373263 166 - . . scaffold695 WUBlastX LTR_Gypsy 372691 373428 69 - . . scaffold695 WUBlastX LTR_Gypsy 372697 372945 171 - . . scaffold695 WUBlastX LTR_Gypsy 373485 373754 41 - . . scaffold695 WUBlastX LTR_Gypsy 373578 373793 32 - . . scaffold695 GLEAN mRNA 374224 375486 0.909111 - . ID=CGI_10023284; scaffold695 GLEAN promoter 375487 376486 0.909111 - . ID=CGI_10023284; scaffold695 TRF Tandem_Repeat 379154 379297 96 + . . scaffold695 GLEAN mRNA 380083 383953 0.998896 - . ID=CGI_10023285; scaffold695 TRF Tandem_Repeat 383367 383421 110 + . . scaffold695 GLEAN promoter 383954 384953 0.998896 - . ID=CGI_10023285; scaffold695 TRF Tandem_Repeat 408094 408146 106 + . . scaffold695 TRF Tandem_Repeat 412967 413019 106 + . . scaffold695 GLEAN mRNA 427389 435356 0.777738 - . ID=CGI_10023286; scaffold695 TRF Tandem_Repeat 432746 432807 124 + . . scaffold695 TRF Tandem_Repeat 433436 433479 88 + . . scaffold695 GLEAN promoter 435357 436356 0.777738 - . ID=CGI_10023286; scaffold695 GLEAN mRNA 447074 447991 0.555619 - . ID=CGI_10023287; scaffold695 GLEAN promoter 447992 448991 0.555619 - . ID=CGI_10023287; scaffold695 TRF Tandem_Repeat 449102 449232 146 + . . scaffold695 TRF Tandem_Repeat 449477 449525 98 + . . scaffold695 TRF Tandem_Repeat 452687 452736 100 + . . scaffold695 GLEAN mRNA 453660 455130 1 - . ID=CGI_10023288; scaffold695 GLEAN promoter 455131 456130 1 - . ID=CGI_10023288; scaffold695 TRF Tandem_Repeat 457614 457654 64 + . . scaffold695 GLEAN mRNA 461993 462613 1 - . ID=CGI_10023289; scaffold695 GLEAN promoter 462614 463613 1 - . ID=CGI_10023289; scaffold695 GLEAN mRNA 462757 466926 0.17973 - . ID=CGI_10023290; scaffold695 WUBlastX LTR_Gypsy 464045 464302 30 - . . scaffold695 GLEAN promoter 466927 467926 0.17973 - . ID=CGI_10023290; scaffold695 GLEAN mRNA 467306 468432 0.336515 - . ID=CGI_10023291; scaffold695 GLEAN promoter 468433 469432 0.336515 - . ID=CGI_10023291; scaffold695 GLEAN mRNA 472045 519122 0.550762 - . ID=CGI_10023292; scaffold695 TRF Tandem_Repeat 484937 484990 108 + . . scaffold695 GLEAN promoter 519123 520122 0.550762 - . ID=CGI_10023292; scaffold695 TRF Tandem_Repeat 520911 520946 63 + . . scaffold695 TRF Tandem_Repeat 523056 523150 66 + . . scaffold695 WUBlastX LINE_CR1-L2 526711 527214 48 + . . scaffold695 WUBlastX LINE_L2 526753 527583 38 + . . scaffold695 WUBlastX LINE_CR1-L2 526840 527223 110 + . . scaffold695 TRF Tandem_Repeat 529739 529798 120 + . . scaffold695 GLEAN mRNA 546713 556810 0.999612 - . ID=CGI_10023293; scaffold695 GLEAN promoter 556811 557810 0.999612 - . ID=CGI_10023293; scaffold695 TRF Tandem_Repeat 563664 564049 193 + . . scaffold695 TRF Tandem_Repeat 563666 564049 214 + . . scaffold695 TRF Tandem_Repeat 563730 563918 139 + . . scaffold695 TRF Tandem_Repeat 573031 573060 60 + . . scaffold695 TRF Tandem_Repeat 575914 575993 51 + . . scaffold695 TRF Tandem_Repeat 575953 576126 109 + . . scaffold695 TRF Tandem_Repeat 575998 576128 136 + . . scaffold695 TRF Tandem_Repeat 575998 576128 136 + . . scaffold695 TRF Tandem_Repeat 578167 578379 252 + . . scaffold695 TRF Tandem_Repeat 580021 580300 283 + . . scaffold695 TRF Tandem_Repeat 580021 580300 416 + . . scaffold695 TRF Tandem_Repeat 580029 580305 287 + . . scaffold695 TRF Tandem_Repeat 580796 580851 112 + . . scaffold695 TRF Tandem_Repeat 586237 586266 51 + . . scaffold695 GLEAN mRNA 587616 588819 0.73455 - . ID=CGI_10023294; scaffold695 GLEAN promoter 588820 589819 0.73455 - . ID=CGI_10023294; scaffold695 TRF Tandem_Repeat 589719 589753 52 + . . scaffold695 GLEAN mRNA 592917 604111 0.88028 - . ID=CGI_10023295; scaffold695 GLEAN promoter 604112 605111 0.88028 - . ID=CGI_10023295; scaffold695 GLEAN mRNA 624362 624646 1 - . ID=CGI_10023296; scaffold695 GLEAN promoter 624647 625646 1 - . ID=CGI_10023296; scaffold695 GLEAN mRNA 637664 641747 0.499137 - . ID=CGI_10023297; scaffold695 GLEAN promoter 641238 642237 0.97665 + . ID=CGI_10023298; scaffold695 GLEAN promoter 641748 642747 0.499137 - . ID=CGI_10023297; scaffold695 GLEAN mRNA 642238 648070 0.97665 + . ID=CGI_10023298; scaffold695 TRF Tandem_Repeat 643021 643068 96 + . . scaffold695 GLEAN mRNA 649613 650844 1 - . ID=CGI_10023299; scaffold695 GLEAN promoter 650845 651844 1 - . ID=CGI_10023299; scaffold695 GLEAN mRNA 653636 679626 0.998336 - . ID=CGI_10023300; scaffold695 TRF Tandem_Repeat 656777 656831 110 + . . scaffold695 TRF Tandem_Repeat 664629 664676 96 + . . scaffold695 TRF Tandem_Repeat 670054 670084 62 + . . scaffold695 TRF Tandem_Repeat 677284 677355 144 + . . scaffold695 GLEAN promoter 679627 680626 0.998336 - . ID=CGI_10023300; scaffold695 GLEAN mRNA 679649 687382 0.99962 - . ID=CGI_10023301; scaffold695 TRF Tandem_Repeat 680674 680737 128 + . . scaffold695 WUBlastX DNA_Sola 681165 681380 39 + . . scaffold695 WUBlastX DNA_Sola 681463 681798 176 + . . scaffold695 TRF Tandem_Repeat 684411 684474 121 + . . scaffold695 GLEAN promoter 687383 688382 0.99962 - . ID=CGI_10023301; scaffold695 GLEAN mRNA 687864 694904 1 - . ID=CGI_10023302; scaffold695 TRF Tandem_Repeat 688958 689014 98 + . . scaffold695 GLEAN promoter 694905 695904 1 - . ID=CGI_10023302; scaffold695 GLEAN mRNA 695031 701634 0.999999 - . ID=CGI_10023303; scaffold695 GLEAN promoter 701635 702634 0.999999 - . ID=CGI_10023303; scaffold695 TRF Tandem_Repeat 703722 703758 67 + . . scaffold695 GLEAN mRNA 705983 727911 0.988963 - . ID=CGI_10023304; scaffold695 WUBlastX LINE_CR1 714861 714908 20 + . . scaffold695 WUBlastX LINE_L1 715010 715111 26 + . . scaffold695 WUBlastX LINE_RTE-BovB 715568 716314 559 + . . scaffold695 WUBlastX LINE_RTE-BovB 715568 716179 602 + . . scaffold695 WUBlastX LINE_RTE-BovB 715568 716821 528 + . . scaffold695 WUBlastX LINE_RTE-BovB 716797 716871 35 + . . scaffold695 GLEAN promoter 727912 728911 0.988963 - . ID=CGI_10023304; scaffold695 GLEAN promoter 737837 738836 0.9766 + . ID=CGI_10023305; scaffold695 GLEAN mRNA 738837 751819 0.9766 + . ID=CGI_10023305; scaffold695 GLEAN promoter 758120 759119 0.995957 + . ID=CGI_10023306; scaffold695 TRF Tandem_Repeat 758930 758979 100 + . . scaffold695 GLEAN mRNA 759120 784127 0.995957 + . ID=CGI_10023306; scaffold695 GLEAN mRNA 766123 772472 1 - . ID=CGI_10023307; scaffold695 TRF Tandem_Repeat 772162 772186 50 + . . scaffold695 GLEAN promoter 772473 773472 1 - . ID=CGI_10023307; scaffold695 GLEAN promoter 783219 784218 0.963502 + . ID=CGI_10023308; scaffold695 GLEAN mRNA 784219 796374 0.963502 + . ID=CGI_10023308; scaffold695 WUBlastX LINE_RTE-BovB 796796 796918 56 - . . scaffold695 WUBlastX LINE_RTE-BovB 796827 797099 77 - . . scaffold695 TRF Tandem_Repeat 797105 797131 54 + . . scaffold695 WUBlastX LINE_RTE-BovB 797222 797422 54 - . . scaffold695 WUBlastX LINE_RTE-BovB 797279 797488 64 - . . scaffold695 WUBlastX LINE_RTE-BovB 797412 797522 20 - . . scaffold695 WUBlastX LINE_RTE-BovB 797537 797629 34 - . . scaffold695 WUBlastX LINE_RTE-BovB 797537 797671 22 - . . scaffold695 TRF Tandem_Repeat 800257 800294 76 + . . scaffold695 WUBlastX LINE_RTE-X 800747 801073 26 + . . scaffold695 WUBlastX LINE_RTE-X 800795 801067 29 + . . scaffold695 TRF Tandem_Repeat 801422 801459 76 + . . scaffold695 WUBlastX LINE_RTE-X 801960 802232 29 + . . scaffold695 WUBlastX LINE_RTE-X 802002 803222 351 + . . scaffold695 WUBlastX LINE_RTE-X 803224 803541 178 + . . scaffold695 WUBlastX LINE_RTE-X 803543 803728 76 + . . scaffold695 WUBlastX LINE_CR1 803634 804218 171 + . . scaffold695 WUBlastX LINE_L2 803727 804572 430 + . . scaffold695 WUBlastX LINE_RTE-X 804935 805273 40 + . . scaffold695 WUBlastX LINE_RTE-X 805028 805399 89 + . . scaffold695 TRF Tandem_Repeat 805907 805935 58 + . . scaffold695 TRF Tandem_Repeat 805933 805969 74 + . . scaffold695 GLEAN promoter 807167 808166 1 + . ID=CGI_10023309; scaffold695 GLEAN mRNA 808167 813753 1 + . ID=CGI_10023309; scaffold696 TRF Tandem_Repeat 3414 3484 88 + . . scaffold696 TRF Tandem_Repeat 4654 4724 88 + . . scaffold696 TRF Tandem_Repeat 4748 4799 59 + . . scaffold696 GLEAN promoter 6653 7652 0.999968 + . ID=CGI_10003719; scaffold696 TRF Tandem_Repeat 7436 7486 93 + . . scaffold696 GLEAN mRNA 7653 15168 0.999968 + . ID=CGI_10003719; scaffold696 WUBlastX LINE_RTE-X 8219 8902 31 + . . scaffold696 TRF Tandem_Repeat 10494 10530 65 + . . scaffold696 WUBlastX LINE_RTE-X 11510 12019 74 + . . scaffold696 WUBlastX LINE_RTE-X 11591 12022 114 + . . scaffold696 TRF Tandem_Repeat 12222 12246 50 + . . scaffold696 WUBlastX LINE_RTE-X 20182 20307 29 + . . scaffold696 WUBlastX LINE_RTE-X 20307 20471 50 + . . scaffold696 WUBlastX LINE_RTE-X 20322 20603 20 + . . scaffold696 WUBlastX LINE_RTE-X 20720 20917 42 + . . scaffold696 WUBlastX LINE_RTE-X 20753 20911 57 + . . scaffold696 GLEAN mRNA 24982 33015 1 - . ID=CGI_10003720; scaffold696 GLEAN promoter 33016 34015 1 - . ID=CGI_10003720; scaffold696 TRF Tandem_Repeat 41412 41599 295 + . . scaffold696 GLEAN mRNA 43701 57994 0.997343 - . ID=CGI_10003721; scaffold696 TRF Tandem_Repeat 51452 52907 2239 + . . scaffold696 TRF Tandem_Repeat 51452 52907 2286 + . . scaffold696 TRF Tandem_Repeat 52931 52997 89 + . . scaffold696 TRF Tandem_Repeat 52931 52984 54 + . . scaffold696 TRF Tandem_Repeat 52938 52997 75 + . . scaffold696 TRF Tandem_Repeat 56592 56629 58 + . . scaffold696 TRF Tandem_Repeat 56629 56656 56 + . . scaffold696 GLEAN promoter 57224 58223 0.999999 + . ID=CGI_10003722; scaffold696 GLEAN promoter 57995 58994 0.997343 - . ID=CGI_10003721; scaffold696 GLEAN mRNA 58224 68449 0.999999 + . ID=CGI_10003722; scaffold696 TRF Tandem_Repeat 65278 66138 1268 + . . scaffold696 GLEAN mRNA 67964 78089 0.811167 - . ID=CGI_10003723; scaffold696 TRF Tandem_Repeat 71989 72088 191 + . . scaffold696 GLEAN promoter 78090 79089 0.811167 - . ID=CGI_10003723; scaffold696 TRF Tandem_Repeat 79010 80007 1271 + . . scaffold698 TRF Tandem_Repeat 38 139 80 + . . scaffold698 WUBlastX LINE_RTE-X 962 1399 80 + . . scaffold698 WUBlastX LINE_RTE-X 1028 1393 86 + . . scaffold698 GLEAN mRNA 8377 13597 0.999235 - . ID=CGI_10020721; scaffold698 GLEAN promoter 13598 14597 0.999235 - . ID=CGI_10020721; scaffold698 WUBlastX LINE_RTE-X 16049 16684 91 - . . scaffold698 WUBlastX LINE_RTE-X 16172 16684 95 - . . scaffold698 WUBlastX LINE_RTE-X 16690 16884 22 - . . scaffold698 WUBlastX LINE_RTE-X 16690 16788 49 - . . scaffold698 WUBlastX LINE_RTE-X 16690 16821 43 - . . scaffold698 GLEAN mRNA 20624 24886 1 - . ID=CGI_10020722; scaffold698 TRF Tandem_Repeat 23658 23690 57 + . . scaffold698 GLEAN promoter 24211 25210 0.999922 + . ID=CGI_10020723; scaffold698 GLEAN promoter 24887 25886 1 - . ID=CGI_10020722; scaffold698 GLEAN mRNA 25211 30117 0.999922 + . ID=CGI_10020723; scaffold698 GLEAN mRNA 33486 34053 0.998817 - . ID=CGI_10020724; scaffold698 GLEAN promoter 34054 35053 0.998817 - . ID=CGI_10020724; scaffold698 GLEAN promoter 35167 36166 0.531037 + . ID=CGI_10020725; scaffold698 GLEAN mRNA 36167 44260 0.531037 + . ID=CGI_10020725; scaffold698 TRF Tandem_Repeat 39757 39922 260 + . . scaffold698 TRF Tandem_Repeat 45440 45484 90 + . . scaffold698 GLEAN promoter 46494 47493 0.800424 + . ID=CGI_10020726; scaffold698 GLEAN mRNA 47494 76860 0.800424 + . ID=CGI_10020726; scaffold698 WUBlastX LINE_RTE-X 51247 51423 67 - . . scaffold698 WUBlastX LINE_RTE-X 51277 51423 76 - . . scaffold698 TRF Tandem_Repeat 52631 52685 110 + . . scaffold698 TRF Tandem_Repeat 67072 67366 265 + . . scaffold698 WUBlastX DNA_Harbinger 67758 68069 104 - . . scaffold698 GLEAN mRNA 81586 93981 0.592995 - . ID=CGI_10020727; scaffold698 WUBlastX LTR_DIRS 81946 82725 446 - . . scaffold698 WUBlastX LTR_DIRS 82728 84389 1217 - . . scaffold698 WUBlastX LTR_DIRS 82737 84845 354 - . . scaffold698 WUBlastX LTR_Gypsy 84824 84979 41 - . . scaffold698 GLEAN promoter 93982 94981 0.592995 - . ID=CGI_10020727; scaffold698 GLEAN promoter 97108 98107 0.999994 + . ID=CGI_10020728; scaffold698 GLEAN mRNA 98108 108566 0.999994 + . ID=CGI_10020728; scaffold698 TRF Tandem_Repeat 98899 98928 51 + . . scaffold698 GLEAN mRNA 103643 112105 0.499068 - . ID=CGI_10020729; scaffold698 TRF Tandem_Repeat 111669 111704 63 + . . scaffold698 GLEAN promoter 112106 113105 0.499068 - . ID=CGI_10020729; scaffold698 GLEAN mRNA 112998 115909 0.990744 - . ID=CGI_10020730; scaffold698 GLEAN promoter 115910 116909 0.990744 - . ID=CGI_10020730; scaffold698 TRF Tandem_Repeat 117510 117617 76 + . . scaffold698 GLEAN mRNA 120082 133227 0.851416 - . ID=CGI_10020731; scaffold698 GLEAN promoter 133228 134227 0.851416 - . ID=CGI_10020731; scaffold698 GLEAN mRNA 135622 139880 0.581477 - . ID=CGI_10020732; scaffold698 GLEAN promoter 139881 140880 0.581477 - . ID=CGI_10020732; scaffold698 WUBlastX LINE_L1-Tx1 144678 145082 83 - . . scaffold698 WUBlastX LINE_L1-Tx1 144744 145160 150 - . . scaffold698 WUBlastX LINE_L1-Tx1 145172 145306 66 - . . scaffold698 WUBlastX LINE_L1-Tx1 145231 145485 79 - . . scaffold698 WUBlastX LINE_L1-Tx1 145321 145485 83 - . . scaffold698 WUBlastX LINE_L1 145327 145515 60 - . . scaffold698 GLEAN mRNA 146860 162740 0.599334 - . ID=CGI_10020733; scaffold698 TRF Tandem_Repeat 147995 148056 124 + . . scaffold698 GLEAN promoter 162741 163740 0.599334 - . ID=CGI_10020733; scaffold698 TRF Tandem_Repeat 170470 171425 1325 + . . scaffold698 WUBlastX LINE_Jockey 175132 175191 23 - . . scaffold698 WUBlastX LINE_CR1 175633 175788 41 - . . scaffold698 WUBlastX LINE_CR1 175657 175794 95 - . . scaffold698 WUBlastX LINE_CR1 175790 176206 188 - . . scaffold698 WUBlastX LINE_CR1 175805 176626 118 - . . scaffold698 WUBlastX LINE_CR1 175805 176491 163 - . . scaffold698 TRF Tandem_Repeat 177600 177883 336 + . . scaffold698 TRF Tandem_Repeat 177605 177883 335 + . . scaffold698 TRF Tandem_Repeat 177612 177883 429 + . . scaffold698 TRF Tandem_Repeat 191599 192243 743 + . . scaffold698 GLEAN mRNA 198052 201418 0.736629 - . ID=CGI_10020734; scaffold698 GLEAN promoter 201419 202418 0.736629 - . ID=CGI_10020734; scaffold698 WUBlastX LINE_L1-Tx1 202915 203298 116 - . . scaffold698 GLEAN promoter 206008 207007 0.793103 + . ID=CGI_10020735; scaffold698 GLEAN mRNA 207008 211049 0.793103 + . ID=CGI_10020735; scaffold698 TRF Tandem_Repeat 210115 210168 108 + . . scaffold698 WUBlastX LINE_L1-Tx1 214403 215398 197 - . . scaffold698 GLEAN promoter 214942 215941 0.793097 + . ID=CGI_10020736; scaffold698 GLEAN mRNA 215942 226142 0.793097 + . ID=CGI_10020736; scaffold698 WUBlastX LINE_L1 216274 217083 54 - . . scaffold698 WUBlastX LINE_L1-Tx1 216460 217080 260 - . . scaffold698 WUBlastX LINE_L1-Tx1 216571 217209 92 - . . scaffold698 WUBlastX LINE_L1 217320 217403 25 - . . scaffold698 TRF Tandem_Repeat 218893 218966 139 + . . scaffold698 TRF Tandem_Repeat 223543 223668 148 + . . scaffold698 GLEAN mRNA 226989 240452 0.790051 - . ID=CGI_10020737; scaffold698 TRF Tandem_Repeat 234500 234553 108 + . . scaffold698 TRF Tandem_Repeat 239481 239582 172 + . . scaffold698 GLEAN promoter 240453 241452 0.790051 - . ID=CGI_10020737; scaffold698 GLEAN promoter 241867 242866 0.999676 + . ID=CGI_10020738; scaffold698 GLEAN mRNA 242867 252447 0.999676 + . ID=CGI_10020738; scaffold698 WUBlastX LINE_CR1-L2 246236 246514 36 - . . scaffold698 GLEAN promoter 252635 253634 0.967963 + . ID=CGI_10020739; scaffold698 TRF Tandem_Repeat 253420 253479 56 + . . scaffold698 GLEAN mRNA 253635 266437 0.967963 + . ID=CGI_10020739; scaffold698 TRF Tandem_Repeat 256279 256337 118 + . . scaffold698 TRF Tandem_Repeat 286931 286983 106 + . . scaffold698 GLEAN promoter 287046 288045 1 + . ID=CGI_10020740; scaffold698 GLEAN mRNA 288046 288896 1 + . ID=CGI_10020740; scaffold698 TRF Tandem_Repeat 293469 293525 114 + . . scaffold698 TRF Tandem_Repeat 293525 293552 56 + . . scaffold698 TRF Tandem_Repeat 298321 298349 58 + . . scaffold698 WUBlastX LINE_CR1 298773 299309 66 + . . scaffold698 WUBlastX LINE_CR1 299467 299922 94 + . . scaffold698 WUBlastX LINE_CR1 299626 299922 96 + . . scaffold698 WUBlastX LINE_CR1 299928 300065 27 + . . scaffold698 WUBlastX LINE_CR1 300269 301072 46 + . . scaffold698 WUBlastX LINE_CR1 300590 301975 198 + . . scaffold698 WUBlastX LINE_CR1 300860 301795 221 + . . scaffold698 WUBlastX LINE_CR1 301442 301912 199 + . . scaffold698 WUBlastX LINE_Rex-Babar 301481 302092 32 + . . scaffold698 TRF Tandem_Repeat 302911 302958 96 + . . scaffold698 WUBlastX LINE_CR1 303496 303825 77 + . . scaffold698 WUBlastX LINE_CR1 303613 304227 135 + . . scaffold698 TRF Tandem_Repeat 311819 311872 108 + . . scaffold698 TRF Tandem_Repeat 311985 312053 70 + . . scaffold698 GLEAN mRNA 322964 343620 0.590443 - . ID=CGI_10020741; scaffold698 TRF Tandem_Repeat 332800 333074 316 + . . scaffold698 TRF Tandem_Repeat 332801 333074 314 + . . scaffold698 TRF Tandem_Repeat 332801 333074 393 + . . scaffold698 TRF Tandem_Repeat 333734 334081 318 + . . scaffold698 TRF Tandem_Repeat 333734 334037 348 + . . scaffold698 TRF Tandem_Repeat 333734 334080 568 + . . scaffold698 TRF Tandem_Repeat 337145 337225 153 + . . scaffold698 GLEAN promoter 343621 344620 0.590443 - . ID=CGI_10020741; scaffold698 GLEAN mRNA 346724 360044 0.863777 - . ID=CGI_10020742; scaffold698 TRF Tandem_Repeat 353444 353499 112 + . . scaffold698 TRF Tandem_Repeat 355193 356046 1007 + . . scaffold698 GLEAN promoter 360045 361044 0.863777 - . ID=CGI_10020742; scaffold698 GLEAN mRNA 364766 368622 1 - . ID=CGI_10020743; scaffold698 TRF Tandem_Repeat 368442 368482 82 + . . scaffold698 GLEAN promoter 368623 369622 1 - . ID=CGI_10020743; scaffold698 TRF Tandem_Repeat 369453 369485 66 + . . scaffold698 GLEAN mRNA 370975 374938 1 - . ID=CGI_10020744; scaffold698 GLEAN promoter 373320 374319 0.648455 + . ID=CGI_10020745; scaffold698 GLEAN mRNA 374320 383015 0.648455 + . ID=CGI_10020745; scaffold698 GLEAN promoter 374939 375938 1 - . ID=CGI_10020744; scaffold698 TRF Tandem_Repeat 378864 378920 114 + . . scaffold698 GLEAN mRNA 384445 389859 0.999996 - . ID=CGI_10020746; scaffold698 GLEAN promoter 389860 390859 0.999996 - . ID=CGI_10020746; scaffold698 TRF Tandem_Repeat 391455 391532 156 + . . scaffold698 TRF Tandem_Repeat 391613 391645 66 + . . scaffold698 GLEAN mRNA 392960 394303 0.999984 - . ID=CGI_10020747; scaffold698 GLEAN promoter 394304 395303 0.999984 - . ID=CGI_10020747; scaffold698 TRF Tandem_Repeat 403669 403714 56 + . . scaffold698 TRF Tandem_Repeat 408871 408895 50 + . . scaffold698 WUBlastX DNA_TcMar-Marin 409525 409740 63 + . . scaffold698 GLEAN mRNA 410047 411813 0.988914 - . ID=CGI_10020748; scaffold698 GLEAN promoter 411814 412813 0.988914 - . ID=CGI_10020748; scaffold698 GLEAN promoter 421295 422294 0.999408 + . ID=CGI_10020749; scaffold698 GLEAN mRNA 422295 425394 0.999408 + . ID=CGI_10020749; scaffold698 TRF Tandem_Repeat 422852 422913 51 + . . scaffold698 TRF Tandem_Repeat 434009 434045 74 + . . scaffold698 GLEAN mRNA 434063 434455 1 - . ID=CGI_10020750; scaffold698 GLEAN promoter 434456 435455 1 - . ID=CGI_10020750; scaffold698 TRF Tandem_Repeat 442082 442124 86 + . . scaffold698 TRF Tandem_Repeat 444752 444796 90 + . . scaffold698 GLEAN mRNA 445927 454841 0.694302 - . ID=CGI_10020751; scaffold698 TRF Tandem_Repeat 448620 448660 82 + . . scaffold698 GLEAN promoter 454842 455841 0.694302 - . ID=CGI_10020751; scaffold698 GLEAN mRNA 458453 461498 1 - . ID=CGI_10020752; scaffold698 GLEAN promoter 461499 462498 1 - . ID=CGI_10020752; scaffold698 TRF Tandem_Repeat 468769 469151 175 + . . scaffold698 TRF Tandem_Repeat 468816 469144 185 + . . scaffold698 TRF Tandem_Repeat 468852 469151 259 + . . scaffold698 TRF Tandem_Repeat 469195 469221 54 + . . scaffold698 TRF Tandem_Repeat 472280 472311 64 + . . scaffold698 TRF Tandem_Repeat 472423 473185 1088 + . . scaffold698 TRF Tandem_Repeat 499144 499209 116 + . . scaffold698 TRF Tandem_Repeat 499145 499206 72 + . . scaffold698 TRF Tandem_Repeat 500648 501397 1073 + . . scaffold698 TRF Tandem_Repeat 509064 509136 110 + . . scaffold698 WUBlastX LINE_Penelope 536556 537044 65 - . . scaffold698 WUBlastX LINE_L1-Tx1 537395 537616 46 - . . scaffold698 WUBlastX LINE_L1 537439 537996 53 - . . scaffold698 WUBlastX LINE_L1 537529 537987 77 - . . scaffold698 WUBlastX LINE_L1 537649 538080 87 - . . scaffold698 WUBlastX LINE_L1-Tx1 537652 538011 157 - . . scaffold698 WUBlastX LINE_L2 538629 539060 75 - . . scaffold698 WUBlastX LINE_L2 538674 539147 67 - . . scaffold698 TRF Tandem_Repeat 541952 541981 51 + . . scaffold698 GLEAN promoter 543468 544467 0.654813 + . ID=CGI_10020753; scaffold698 GLEAN mRNA 544468 551008 0.654813 + . ID=CGI_10020753; scaffold698 GLEAN mRNA 553216 580473 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 554683 554786 178 + . . scaffold698 TRF Tandem_Repeat 557867 558289 388 + . . scaffold698 TRF Tandem_Repeat 559838 560110 165 + . . scaffold698 TRF Tandem_Repeat 563144 563190 94 + . . scaffold698 TRF Tandem_Repeat 567917 567961 54 + . . scaffold698 TRF Tandem_Repeat 568090 568449 332 + . . scaffold698 TRF Tandem_Repeat 568233 568449 380 + . . scaffold698 TRF Tandem_Repeat 570948 570997 100 + . . scaffold698 TRF Tandem_Repeat 572457 572542 163 + . . scaffold698 TRF Tandem_Repeat 573427 574111 1118 + . . scaffold698 TRF Tandem_Repeat 576283 576617 162 + . . scaffold698 GLEAN promoter 577518 578517 1 + . ID=CGI_10020755; scaffold698 GLEAN mRNA 578518 588335 1 + . ID=CGI_10020755; scaffold698 GLEAN promoter 580474 581473 0.28436 - . ID=CGI_10020754; scaffold698 TRF Tandem_Repeat 583855 584229 732 + . . scaffold698 TRF Tandem_Repeat 587477 587510 68 + . . scaffold698 TRF Tandem_Repeat 587508 587553 92 + . . scaffold698 GLEAN mRNA 589564 592054 0.87632 - . ID=CGI_10020756; scaffold698 GLEAN promoter 592055 593054 0.87632 - . ID=CGI_10020756; scaffold698 TRF Tandem_Repeat 592092 592118 54 + . . scaffold698 TRF Tandem_Repeat 592332 592742 399 + . . scaffold698 TRF Tandem_Repeat 592335 592723 316 + . . scaffold698 TRF Tandem_Repeat 592395 592714 502 + . . scaffold698 TRF Tandem_Repeat 592691 592750 66 + . . scaffold698 TRF Tandem_Repeat 599790 599827 76 + . . scaffold698 TRF Tandem_Repeat 601357 601401 90 + . . scaffold698 TRF Tandem_Repeat 604026 604076 57 + . . scaffold698 TRF Tandem_Repeat 606583 607003 338 + . . scaffold698 TRF Tandem_Repeat 606584 606971 390 + . . scaffold698 TRF Tandem_Repeat 607098 607212 142 + . . scaffold698 GLEAN mRNA 619639 635563 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 621573 622642 1125 + . . scaffold698 TRF Tandem_Repeat 621961 622530 420 + . . scaffold698 TRF Tandem_Repeat 626158 627215 884 + . . scaffold698 TRF Tandem_Repeat 626158 627215 1118 + . . scaffold698 TRF Tandem_Repeat 626158 627215 1118 + . . scaffold698 TRF Tandem_Repeat 629301 629426 64 + . . scaffold698 TRF Tandem_Repeat 629374 629426 97 + . . scaffold698 GLEAN promoter 635564 636563 0.993906 - . ID=CGI_10020757; scaffold698 TRF Tandem_Repeat 647501 647536 72 + . . scaffold698 GLEAN mRNA 647592 658716 0.999594 - . ID=CGI_10020758; scaffold698 TRF Tandem_Repeat 656349 656714 632 + . . scaffold698 GLEAN promoter 658717 659716 0.999594 - . ID=CGI_10020758; scaffold698 TRF Tandem_Repeat 658955 659043 65 + . . scaffold70 GLEAN mRNA 4631 4816 0.999372 - . ID=CGI_10024750; scaffold70 GLEAN promoter 4817 5816 0.999372 - . ID=CGI_10024750; scaffold70 WUBlastX LTR_Gypsy 5711 5899 28 - . . scaffold70 WUBlastX LTR_Gypsy 5936 6133 28 - . . scaffold70 WUBlastX LTR_Gypsy 5972 6127 33 - . . scaffold70 WUBlastX LINE_RTE-X 26670 27170 148 - . . scaffold70 WUBlastX LINE_RTE-X 26670 27059 243 - . . scaffold70 WUBlastX LINE_RTE-X 27173 28726 194 - . . scaffold70 WUBlastX LINE_CR1 28301 28900 36 - . . scaffold70 WUBlastX LINE_L1-Tx1 28877 29677 142 - . . scaffold70 WUBlastX LINE_L1 28973 29608 272 - . . scaffold70 WUBlastX LINE_L1 29015 29923 49 - . . scaffold70 GLEAN promoter 37548 38547 0.99982 + . ID=CGI_10024751; scaffold70 GLEAN mRNA 38548 55637 0.99982 + . ID=CGI_10024751; scaffold70 TRF Tandem_Repeat 39658 39924 276 + . . scaffold70 TRF Tandem_Repeat 40982 41422 428 + . . scaffold70 TRF Tandem_Repeat 43555 43918 524 + . . scaffold70 TRF Tandem_Repeat 44740 44780 82 + . . scaffold70 TRF Tandem_Repeat 46581 46891 370 + . . scaffold70 TRF Tandem_Repeat 50287 50604 406 + . . scaffold70 TRF Tandem_Repeat 52776 52833 100 + . . scaffold70 TRF Tandem_Repeat 56595 57163 975 + . . scaffold70 TRF Tandem_Repeat 56605 56662 51 + . . scaffold70 TRF Tandem_Repeat 58928 58976 98 + . . scaffold70 TRF Tandem_Repeat 60041 60290 342 + . . scaffold70 TRF Tandem_Repeat 60041 60290 350 + . . scaffold70 TRF Tandem_Repeat 60048 60286 347 + . . scaffold70 GLEAN promoter 66038 67037 0.995804 + . ID=CGI_10024752; scaffold70 GLEAN mRNA 67038 67958 0.995804 + . ID=CGI_10024752; scaffold70 GLEAN mRNA 68363 83659 1 - . ID=CGI_10024753; scaffold70 TRF Tandem_Repeat 68807 68854 75 + . . scaffold70 TRF Tandem_Repeat 70005 70310 452 + . . scaffold70 TRF Tandem_Repeat 70383 70834 534 + . . scaffold70 TRF Tandem_Repeat 70383 71771 633 + . . scaffold70 TRF Tandem_Repeat 70935 71769 953 + . . scaffold70 TRF Tandem_Repeat 70938 71769 778 + . . scaffold70 GLEAN promoter 83660 84659 1 - . ID=CGI_10024753; scaffold70 TRF Tandem_Repeat 100320 100360 82 + . . scaffold70 WUBlastX RC_Helitron 107354 107638 97 + . . scaffold70 WUBlastX RC_Helitron 107411 107641 130 + . . scaffold70 WUBlastX RC_Helitron 107656 108237 307 + . . scaffold70 GLEAN mRNA 110646 126975 0.99511 - . ID=CGI_10024754; scaffold70 GLEAN promoter 119935 120934 1 + . ID=CGI_10024755; scaffold70 WUBlastX DNA_TcMar-m44 120005 120889 559 + . . scaffold70 GLEAN mRNA 120935 121144 1 + . ID=CGI_10024755; scaffold70 TRF Tandem_Repeat 122718 123173 756 + . . scaffold70 TRF Tandem_Repeat 126680 126831 151 + . . scaffold70 TRF Tandem_Repeat 126687 126808 127 + . . scaffold70 GLEAN promoter 126976 127975 0.99511 - . ID=CGI_10024754; scaffold70 GLEAN promoter 127864 128863 0.999356 + . ID=CGI_10024756; scaffold70 GLEAN mRNA 128864 131980 0.999356 + . ID=CGI_10024756; scaffold70 TRF Tandem_Repeat 133414 133523 105 + . . scaffold70 TRF Tandem_Repeat 133666 133768 127 + . . scaffold70 GLEAN promoter 135343 136342 0.79504 + . ID=CGI_10024757; scaffold70 GLEAN mRNA 136343 145429 0.79504 + . ID=CGI_10024757; scaffold70 TRF Tandem_Repeat 147199 147235 51 + . . scaffold70 GLEAN mRNA 151340 154557 1 - . ID=CGI_10024758; scaffold70 TRF Tandem_Repeat 151951 151978 56 + . . scaffold70 GLEAN promoter 154558 155557 1 - . ID=CGI_10024758; scaffold70 TRF Tandem_Repeat 156853 156896 88 + . . scaffold70 TRF Tandem_Repeat 157260 157395 182 + . . scaffold70 WUBlastX LINE_RTE-BovB 159660 160211 442 + . . scaffold70 WUBlastX LINE_RTE-BovB 160208 161350 417 + . . scaffold70 WUBlastX LINE_RTE-BovB 161334 161492 124 + . . scaffold70 WUBlastX LINE_RTE-BovB 161476 162015 295 + . . scaffold70 GLEAN promoter 161739 162738 1 + . ID=CGI_10024759; scaffold70 WUBlastX LINE_RTE-BovB 162009 162356 216 + . . scaffold70 GLEAN mRNA 162739 168966 1 + . ID=CGI_10024759; scaffold70 TRF Tandem_Repeat 166760 166791 55 + . . scaffold70 GLEAN mRNA 171032 212395 0.995 - . ID=CGI_10024760; scaffold70 TRF Tandem_Repeat 208959 209115 212 + . . scaffold70 GLEAN promoter 212396 213395 0.995 - . ID=CGI_10024760; scaffold70 TRF Tandem_Repeat 231343 231379 51 + . . scaffold70 GLEAN promoter 233466 234465 0.55595 + . ID=CGI_10024761; scaffold70 TRF Tandem_Repeat 234371 234396 52 + . . scaffold70 GLEAN mRNA 234466 250351 0.55595 + . ID=CGI_10024761; scaffold70 TRF Tandem_Repeat 258211 258812 308 + . . scaffold70 GLEAN promoter 265608 266607 0.371481 + . ID=CGI_10024762; scaffold70 GLEAN mRNA 266608 277664 0.371481 + . ID=CGI_10024762; scaffold70 TRF Tandem_Repeat 269038 269082 74 + . . scaffold70 TRF Tandem_Repeat 271864 272186 329 + . . scaffold70 TRF Tandem_Repeat 284559 284610 104 + . . scaffold70 TRF Tandem_Repeat 289581 289701 206 + . . scaffold70 TRF Tandem_Repeat 290568 290625 116 + . . scaffold70 TRF Tandem_Repeat 294661 294750 94 + . . scaffold70 WUBlastX LTR_Ngaro 294891 295508 77 - . . scaffold70 WUBlastX LTR_Ngaro 294894 295904 69 - . . scaffold70 WUBlastX LTR_Ngaro 295095 295733 215 - . . scaffold70 TRF Tandem_Repeat 300128 300217 112 + . . scaffold70 WUBlastX LINE_L1-Tx1 303243 303452 66 - . . scaffold70 WUBlastX LINE_L1 303258 303503 38 - . . scaffold70 WUBlastX LINE_L1-Tx1 303559 304038 40 - . . scaffold70 WUBlastX LTR_Ngaro 317803 318216 42 + . . scaffold70 WUBlastX LTR_Ngaro 318759 319016 20 + . . scaffold70 WUBlastX LTR_Ngaro 318798 319016 67 + . . scaffold70 GLEAN mRNA 319975 320598 0.999984 - . ID=CGI_10024763; scaffold70 GLEAN promoter 320599 321598 0.999984 - . ID=CGI_10024763; scaffold70 GLEAN mRNA 330271 330894 0.942642 - . ID=CGI_10024764; scaffold70 GLEAN promoter 330895 331894 0.942642 - . ID=CGI_10024764; scaffold70 WUBlastX LINE_L1-Tx1 333641 334408 52 + . . scaffold70 WUBlastX LINE_L1-Tx1 334058 334399 99 + . . scaffold70 WUBlastX LINE_L1 335217 335294 22 + . . scaffold70 WUBlastX LINE_L1 335232 335288 30 + . . scaffold70 WUBlastX LINE_L1-Tx1 335368 335622 44 + . . scaffold70 WUBlastX LINE_L1-Tx1 335726 336394 94 + . . scaffold70 WUBlastX LINE_L1-Tx1 335837 336394 104 + . . scaffold70 WUBlastX LINE_L1 336002 336394 107 + . . scaffold70 WUBlastX LINE_L1-Tx1 336062 336388 174 + . . scaffold70 WUBlastX LINE_L1 336086 336535 148 + . . scaffold70 WUBlastX LINE_L1 336497 336562 36 + . . scaffold70 WUBlastX LINE_L1-Tx1 336571 336942 112 + . . scaffold70 WUBlastX LINE_L1 336628 336978 174 + . . scaffold70 WUBlastX LINE_L1 336628 337044 126 + . . scaffold70 WUBlastX LINE_L1-Tx1 336998 337186 94 + . . scaffold70 WUBlastX LINE_L1-Tx1 337028 337228 39 + . . scaffold70 WUBlastX LINE_L1 337378 337449 22 + . . scaffold70 WUBlastX LINE_L1-Tx1 338064 338285 21 + . . scaffold70 WUBlastX LINE_Jockey 340189 340230 22 + . . scaffold70 TRF Tandem_Repeat 340728 340758 62 + . . scaffold70 WUBlastX LINE_L2 340948 341616 113 + . . scaffold70 WUBlastX LINE_RTE-X 341026 341580 236 + . . scaffold70 WUBlastX LINE_RTE-BovB 341550 341642 64 + . . scaffold70 TRF Tandem_Repeat 341645 341686 84 + . . scaffold70 TRF Tandem_Repeat 341778 341821 79 + . . scaffold70 TRF Tandem_Repeat 355113 355175 126 + . . scaffold70 WUBlastX LINE_CR1 357284 357367 22 + . . scaffold70 WUBlastX LINE_CR1 357302 357979 84 + . . scaffold70 WUBlastX LINE_CR1-L2 357461 358030 184 + . . scaffold70 WUBlastX LINE_L2 357512 358393 153 + . . scaffold70 WUBlastX LINE_CR1-L2 357596 358030 246 + . . scaffold70 GLEAN promoter 365688 366687 0.860497 + . ID=CGI_10024765; scaffold70 GLEAN mRNA 366688 374846 0.860497 + . ID=CGI_10024765; scaffold70 TRF Tandem_Repeat 368239 368357 91 + . . scaffold70 TRF Tandem_Repeat 368933 369026 116 + . . scaffold70 TRF Tandem_Repeat 369075 369173 182 + . . scaffold70 TRF Tandem_Repeat 371923 371967 60 + . . scaffold70 GLEAN mRNA 376441 380838 1 - . ID=CGI_10024766; scaffold70 TRF Tandem_Repeat 376958 377607 821 + . . scaffold70 GLEAN promoter 380839 381838 1 - . ID=CGI_10024766; scaffold70 GLEAN promoter 381510 382509 0.937843 + . ID=CGI_10024767; scaffold70 GLEAN mRNA 382510 387842 0.937843 + . ID=CGI_10024767; scaffold70 TRF Tandem_Repeat 382884 382908 50 + . . scaffold70 TRF Tandem_Repeat 383117 383180 128 + . . scaffold70 TRF Tandem_Repeat 388557 388642 163 + . . scaffold70 TRF Tandem_Repeat 396459 396507 98 + . . scaffold70 TRF Tandem_Repeat 397167 397196 51 + . . scaffold70 TRF Tandem_Repeat 397198 397222 50 + . . scaffold70 GLEAN promoter 397347 398346 0.997573 + . ID=CGI_10024768; scaffold70 GLEAN mRNA 398347 415540 0.997573 + . ID=CGI_10024768; scaffold70 TRF Tandem_Repeat 402474 402503 51 + . . scaffold70 TRF Tandem_Repeat 416839 416867 58 + . . scaffold70 GLEAN mRNA 445089 452419 0.983104 - . ID=CGI_10024769; scaffold70 TRF Tandem_Repeat 447747 447798 104 + . . scaffold70 GLEAN promoter 452420 453419 0.983104 - . ID=CGI_10024769; scaffold70 GLEAN mRNA 452424 453119 0.996819 - . ID=CGI_10024770; scaffold70 WUBlastX LTR_Gypsy 452751 452999 44 - . . scaffold70 WUBlastX LTR_Gypsy 452799 453017 46 - . . scaffold70 GLEAN promoter 453120 454119 0.996819 - . ID=CGI_10024770; scaffold70 TRF Tandem_Repeat 458050 458289 195 + . . scaffold70 GLEAN mRNA 459220 460332 0.999913 - . ID=CGI_10024771; scaffold70 GLEAN promoter 460333 461332 0.999913 - . ID=CGI_10024771; scaffold70 TRF Tandem_Repeat 473207 473259 106 + . . scaffold70 GLEAN mRNA 479588 495612 0.999998 - . ID=CGI_10024772; scaffold70 TRF Tandem_Repeat 482968 483020 88 + . . scaffold70 TRF Tandem_Repeat 487894 487918 50 + . . scaffold70 TRF Tandem_Repeat 493098 493262 276 + . . scaffold70 GLEAN promoter 495613 496612 0.999998 - . ID=CGI_10024772; scaffold70 GLEAN mRNA 496515 501143 0.999983 - . ID=CGI_10024773; scaffold70 GLEAN promoter 501144 502143 0.999983 - . ID=CGI_10024773; scaffold70 GLEAN mRNA 501356 529120 0.998611 - . ID=CGI_10024774; scaffold70 TRF Tandem_Repeat 503839 503880 84 + . . scaffold70 GLEAN promoter 504766 505765 0.349382 + . ID=CGI_10024775; scaffold70 GLEAN mRNA 505766 521255 0.349382 + . ID=CGI_10024775; scaffold70 WUBlastX LINE_RTE-X 515353 515790 22 - . . scaffold70 WUBlastX LINE_RTE-X 515356 515493 29 - . . scaffold70 WUBlastX LINE_RTE-X 515514 515606 34 - . . scaffold70 WUBlastX LINE_RTE-X 515656 515790 48 - . . scaffold70 WUBlastX LINE_RTE-X 517610 517780 83 - . . scaffold70 WUBlastX LINE_CR1-L2 517972 518127 43 + . . scaffold70 TRF Tandem_Repeat 525492 525532 82 + . . scaffold70 GLEAN promoter 527603 528602 0.707773 + . ID=CGI_10024776; scaffold70 TRF Tandem_Repeat 527825 527906 92 + . . scaffold70 TRF Tandem_Repeat 527843 527956 84 + . . scaffold70 GLEAN mRNA 528603 535270 0.707773 + . ID=CGI_10024776; scaffold70 GLEAN promoter 529121 530120 0.998611 - . ID=CGI_10024774; scaffold70 TRF Tandem_Repeat 534157 534197 73 + . . scaffold70 GLEAN promoter 535229 536228 0.992507 + . ID=CGI_10024777; scaffold70 GLEAN mRNA 536229 557801 0.992507 + . ID=CGI_10024777; scaffold70 TRF Tandem_Repeat 543945 543986 57 + . . scaffold70 TRF Tandem_Repeat 544033 544068 72 + . . scaffold70 TRF Tandem_Repeat 549036 549284 295 + . . scaffold70 TRF Tandem_Repeat 549629 550526 1521 + . . scaffold70 TRF Tandem_Repeat 568240 568302 83 + . . scaffold70 WUBlastX LINE_Penelope 571294 572355 251 - . . scaffold70 WUBlastX LINE_Penelope 571537 572307 253 - . . scaffold70 WUBlastX LTR_Gypsy 583939 584616 130 + . . scaffold70 WUBlastX LTR_Gypsy 584104 584781 474 + . . scaffold70 WUBlastX LTR_Gypsy 584125 584904 196 + . . scaffold70 WUBlastX LTR_Gypsy 584685 585260 184 + . . scaffold70 WUBlastX LTR_Gypsy 585233 586018 662 + . . scaffold70 WUBlastX LTR_DIRS 585479 586204 87 + . . scaffold70 WUBlastX LTR_Gypsy 586064 586243 42 + . . scaffold70 TRF Tandem_Repeat 589625 590219 616 + . . scaffold70 TRF Tandem_Repeat 589705 589832 58 + . . scaffold70 TRF Tandem_Repeat 589969 590063 64 + . . scaffold70 WUBlastX LINE_L1 590734 590913 46 - . . scaffold70 WUBlastX LINE_L1-Tx1 591155 591316 23 - . . scaffold70 TRF Tandem_Repeat 601759 601788 60 + . . scaffold70 WUBlastX DNA_TcMar-Tc1 602499 602798 102 + . . scaffold70 WUBlastX DNA_TcMar-Tc1 602801 603151 40 + . . scaffold70 WUBlastX DNA_TcMar-Tc1 602813 603100 123 + . . scaffold70 TRF Tandem_Repeat 604627 604671 90 + . . scaffold70 TRF Tandem_Repeat 605033 605083 77 + . . scaffold70 GLEAN mRNA 605933 624830 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_RTE-X 610017 610199 24 + . . scaffold70 WUBlastX LINE_RTE-X 611424 611684 41 + . . scaffold70 WUBlastX LINE_RTE-X 611466 611684 66 + . . scaffold70 WUBlastX LINE_L2 611888 612049 28 + . . scaffold70 WUBlastX LINE_L2 612685 612807 25 + . . scaffold70 WUBlastX LINE_L2 612710 613189 51 + . . scaffold70 WUBlastX LINE_RTE-X 612794 613168 80 + . . scaffold70 WUBlastX LINE_L2 612899 613273 42 + . . scaffold70 WUBlastX LINE_L1-Tx1 612920 613168 90 + . . scaffold70 WUBlastX LINE_RTE-X 612953 613387 40 + . . scaffold70 TRF Tandem_Repeat 616988 617037 84 + . . scaffold70 TRF Tandem_Repeat 617477 617625 280 + . . scaffold70 GLEAN promoter 624831 625830 0.814164 - . ID=CGI_10024778; scaffold70 WUBlastX LINE_RTE-X 626425 626790 62 + . . scaffold70 WUBlastX LINE_RTE-X 626488 626859 48 + . . scaffold70 WUBlastX LINE_RTE-X 626503 626799 95 + . . scaffold70 WUBlastX LINE_RTE-X 626554 626769 96 + . . scaffold70 WUBlastX LINE_RTE-X 627435 627707 41 - . . scaffold70 WUBlastX LINE_RTE-X 627507 627824 31 - . . scaffold70 WUBlastX LINE_RTE-X 627555 627701 52 - . . scaffold70 WUBlastX LINE_RTE-X 627588 627740 42 - . . scaffold70 TRF Tandem_Repeat 629884 629998 83 + . . scaffold70 GLEAN promoter 632159 633158 0.999068 + . ID=CGI_10024779; scaffold70 GLEAN mRNA 633159 633521 0.999068 + . ID=CGI_10024779; scaffold70 GLEAN mRNA 635987 639020 0.791674 - . ID=CGI_10024780; scaffold70 GLEAN promoter 639021 640020 0.791674 - . ID=CGI_10024780; scaffold70 GLEAN promoter 643458 644457 0.908162 + . ID=CGI_10024781; scaffold70 GLEAN mRNA 644458 648459 0.908162 + . ID=CGI_10024781; scaffold70 TRF Tandem_Repeat 646430 646740 321 + . . scaffold70 TRF Tandem_Repeat 648394 649229 1395 + . . scaffold70 TRF Tandem_Repeat 648394 649229 1377 + . . scaffold70 GLEAN promoter 651297 652296 1 + . ID=CGI_10024782; scaffold70 GLEAN mRNA 652297 656462 1 + . ID=CGI_10024782; scaffold70 GLEAN promoter 656876 657875 1 + . ID=CGI_10024783; scaffold70 GLEAN mRNA 657876 666767 1 + . ID=CGI_10024783; scaffold70 TRF Tandem_Repeat 663545 664230 939 + . . scaffold70 GLEAN mRNA 667629 669031 1 - . ID=CGI_10024784; scaffold70 GLEAN promoter 669032 670031 1 - . ID=CGI_10024784; scaffold70 TRF Tandem_Repeat 671882 671968 104 + . . scaffold70 TRF Tandem_Repeat 672053 672214 191 + . . scaffold70 TRF Tandem_Repeat 672062 672242 193 + . . scaffold70 TRF Tandem_Repeat 672241 672432 188 + . . scaffold70 GLEAN promoter 672599 673598 1 + . ID=CGI_10024785; scaffold70 GLEAN mRNA 673599 675665 1 + . ID=CGI_10024785; scaffold70 GLEAN promoter 676161 677160 0.804421 + . ID=CGI_10024786; scaffold70 GLEAN mRNA 677161 683797 0.804421 + . ID=CGI_10024786; scaffold70 TRF Tandem_Repeat 679558 679988 413 + . . scaffold70 TRF Tandem_Repeat 682396 683049 635 + . . scaffold70 GLEAN promoter 686125 687124 1 + . ID=CGI_10024787; scaffold70 GLEAN mRNA 687125 688593 1 + . ID=CGI_10024787; scaffold70 GLEAN mRNA 689757 708725 0.811083 - . ID=CGI_10024788; scaffold70 WUBlastX LINE_RTE-BovB 691818 691952 32 + . . scaffold70 TRF Tandem_Repeat 697162 697559 615 + . . scaffold70 TRF Tandem_Repeat 698751 698800 100 + . . scaffold70 WUBlastX DNA_TcMar-Tc1 701726 701935 143 - . . scaffold70 WUBlastX DNA_TcMar-Tc1 701932 702669 92 - . . scaffold70 WUBlastX DNA_TcMar-Tc1 701932 702462 223 - . . scaffold70 GLEAN promoter 708726 709725 0.811083 - . ID=CGI_10024788; scaffold70 TRF Tandem_Repeat 720105 720178 148 + . . scaffold70 GLEAN mRNA 721101 721925 0.995031 - . ID=CGI_10024789; scaffold70 GLEAN promoter 721926 722925 0.995031 - . ID=CGI_10024789; scaffold70 TRF Tandem_Repeat 722567 722610 88 + . . scaffold70 TRF Tandem_Repeat 725851 728788 3373 + . . scaffold70 TRF Tandem_Repeat 729645 730012 415 + . . scaffold70 TRF Tandem_Repeat 731769 731886 171 + . . scaffold70 TRF Tandem_Repeat 748676 748769 134 + . . scaffold70 TRF Tandem_Repeat 748816 748904 137 + . . scaffold70 TRF Tandem_Repeat 754173 754218 92 + . . scaffold70 GLEAN mRNA 764546 796463 0.934901 - . ID=CGI_10024790; scaffold70 TRF Tandem_Repeat 769461 770904 2215 + . . scaffold70 TRF Tandem_Repeat 772498 772529 55 + . . scaffold70 TRF Tandem_Repeat 781092 781130 78 + . . scaffold70 TRF Tandem_Repeat 783179 783367 65 + . . scaffold70 GLEAN promoter 796464 797463 0.934901 - . ID=CGI_10024790; scaffold70 GLEAN promoter 796976 797975 1 + . ID=CGI_10024791; scaffold70 GLEAN mRNA 797976 800270 1 + . ID=CGI_10024791; scaffold70 GLEAN mRNA 803374 808239 0.999676 - . ID=CGI_10024792; scaffold70 GLEAN promoter 808240 809239 0.999676 - . ID=CGI_10024792; scaffold70 WUBlastX LINE_RTE-X 809352 809492 57 + . . scaffold70 TRF Tandem_Repeat 810911 810961 102 + . . scaffold70 GLEAN promoter 811233 812232 1 + . ID=CGI_10024793; scaffold70 GLEAN mRNA 812233 817894 1 + . ID=CGI_10024793; scaffold70 TRF Tandem_Repeat 815110 816151 1252 + . . scaffold70 TRF Tandem_Repeat 815110 816151 1501 + . . scaffold70 TRF Tandem_Repeat 815110 816151 1499 + . . scaffold70 TRF Tandem_Repeat 820668 821461 1247 + . . scaffold70 GLEAN mRNA 823309 827544 1 - . ID=CGI_10024794; scaffold70 TRF Tandem_Repeat 823959 824014 76 + . . scaffold70 GLEAN promoter 827545 828544 1 - . ID=CGI_10024794; scaffold70 TRF Tandem_Repeat 830781 830840 113 + . . scaffold70 GLEAN promoter 830926 831925 0.989219 + . ID=CGI_10024795; scaffold70 GLEAN mRNA 831926 834747 0.989219 + . ID=CGI_10024795; scaffold70 TRF Tandem_Repeat 832059 832655 482 + . . scaffold70 TRF Tandem_Repeat 832099 832655 463 + . . scaffold70 TRF Tandem_Repeat 832099 832621 393 + . . scaffold70 GLEAN mRNA 837695 840489 0.531615 - . ID=CGI_10024796; scaffold70 GLEAN promoter 840490 841489 0.531615 - . ID=CGI_10024796; scaffold70 GLEAN promoter 840853 841852 0.999999 + . ID=CGI_10024797; scaffold70 GLEAN mRNA 841853 844831 0.999999 + . ID=CGI_10024797; scaffold70 WUBlastX LTR_DIRS 845475 845711 46 + . . scaffold70 WUBlastX LTR_DIRS 845508 845900 37 + . . scaffold70 TRF Tandem_Repeat 846318 846416 119 + . . scaffold70 WUBlastX LINE_RTE-X 848148 849506 245 - . . scaffold70 WUBlastX LINE_RTE-X 848352 849539 308 - . . scaffold70 WUBlastX LINE_RTE-X 849514 849675 58 - . . scaffold70 WUBlastX LINE_RTE-X 849635 850954 272 - . . scaffold70 WUBlastX LINE_RTE-X 851085 851312 112 - . . scaffold70 WUBlastX LINE_RTE-X 851282 851575 69 - . . scaffold70 WUBlastX LINE_CR1 851327 851671 30 - . . scaffold70 WUBlastX LINE_L1 851719 852087 141 - . . scaffold70 WUBlastX LINE_L2 851740 852300 64 - . . scaffold70 WUBlastX LINE_L1 852086 852430 50 - . . scaffold70 WUBlastX LINE_L1 852116 852520 30 - . . scaffold70 WUBlastX LTR_Gypsy 852605 852739 20 + . . scaffold70 WUBlastX LTR_DIRS 852668 853360 74 + . . scaffold70 WUBlastX LTR_DIRS 852766 853005 148 + . . scaffold70 WUBlastX LTR_DIRS 852978 853127 89 + . . scaffold70 WUBlastX LTR_DIRS 853124 853321 84 + . . scaffold70 WUBlastX LTR_DIRS 853399 853917 179 + . . scaffold70 WUBlastX LTR_DIRS 853426 853851 200 + . . scaffold70 TRF Tandem_Repeat 860019 860187 322 + . . scaffold70 GLEAN mRNA 861631 877800 0.918487 - . ID=CGI_10024798; scaffold70 GLEAN promoter 877295 878294 1 + . ID=CGI_10024799; scaffold70 GLEAN promoter 877801 878800 0.918487 - . ID=CGI_10024798; scaffold70 GLEAN mRNA 878295 881167 1 + . ID=CGI_10024799; scaffold70 GLEAN mRNA 889384 891144 0.996819 - . ID=CGI_10024800; scaffold70 GLEAN promoter 890379 891378 0.999996 + . ID=CGI_10024801; scaffold70 GLEAN promoter 891145 892144 0.996819 - . ID=CGI_10024800; scaffold70 GLEAN mRNA 891379 905203 0.999996 + . ID=CGI_10024801; scaffold70 TRF Tandem_Repeat 893504 894473 1021 + . . scaffold70 TRF Tandem_Repeat 893509 894475 804 + . . scaffold70 TRF Tandem_Repeat 893509 894474 997 + . . scaffold70 TRF Tandem_Repeat 894379 894490 86 + . . scaffold70 TRF Tandem_Repeat 900616 900830 364 + . . scaffold70 TRF Tandem_Repeat 903008 903778 1368 + . . scaffold70 GLEAN promoter 908828 909827 0.714729 + . ID=CGI_10024802; scaffold70 GLEAN mRNA 909828 916635 0.714729 + . ID=CGI_10024802; scaffold70 TRF Tandem_Repeat 915778 915974 286 + . . scaffold70 TRF Tandem_Repeat 917369 917527 300 + . . scaffold70 GLEAN promoter 922086 923085 0.955608 + . ID=CGI_10024803; scaffold70 GLEAN mRNA 923086 924045 0.955608 + . ID=CGI_10024803; scaffold70 WUBlastX DNA_hAT 923131 923715 84 + . . scaffold70 WUBlastX LINE_CR1 927311 927484 20 - . . scaffold70 WUBlastX LINE_CR1 927576 927737 28 - . . scaffold70 GLEAN promoter 928968 929967 0.470491 + . ID=CGI_10024804; scaffold70 GLEAN mRNA 929968 930774 0.470491 + . ID=CGI_10024804; scaffold70 GLEAN promoter 936097 937096 0.982561 + . ID=CGI_10024805; scaffold70 GLEAN mRNA 937097 954164 0.982561 + . ID=CGI_10024805; scaffold70 TRF Tandem_Repeat 944075 944123 98 + . . scaffold70 TRF Tandem_Repeat 950675 950713 51 + . . scaffold70 TRF Tandem_Repeat 957638 958052 632 + . . scaffold70 GLEAN mRNA 961260 968197 0.999307 - . ID=CGI_10024806; scaffold70 GLEAN promoter 968198 969197 0.999307 - . ID=CGI_10024806; scaffold70 TRF Tandem_Repeat 973862 974114 382 + . . scaffold70 TRF Tandem_Repeat 979676 979778 73 + . . scaffold700 GLEAN mRNA 1430 2532 1 - . ID=CGI_10006009; scaffold700 GLEAN promoter 2533 3532 1 - . ID=CGI_10006009; scaffold700 GLEAN mRNA 36081 38247 0.758444 - . ID=CGI_10006010; scaffold700 GLEAN promoter 38248 39247 0.758444 - . ID=CGI_10006010; scaffold700 TRF Tandem_Repeat 49932 49985 108 + . . scaffold700 WUBlastX LINE_CR1-L2 51218 51778 205 - . . scaffold700 WUBlastX LINE_CR1-L2 51347 51778 208 - . . scaffold700 TRF Tandem_Repeat 60618 60660 61 + . . scaffold700 TRF Tandem_Repeat 66532 67161 602 + . . scaffold700 TRF Tandem_Repeat 66643 67035 141 + . . scaffold700 WUBlastX LINE_I 87913 88017 22 + . . scaffold700 WUBlastX LINE_CR1 88199 88285 28 + . . scaffold700 WUBlastX LINE_L2 88208 88342 24 + . . scaffold700 WUBlastX LINE_L2 88347 88409 22 + . . scaffold700 WUBlastX LINE_CR1 88768 89622 139 + . . scaffold700 WUBlastX LINE_CR1-L2 88897 90063 262 + . . scaffold700 WUBlastX LINE_L2 89601 90206 49 + . . scaffold700 WUBlastX LINE_L2 90182 90259 31 + . . scaffold700 WUBlastX LINE_L2 90248 90427 32 + . . scaffold700 WUBlastX LINE_L2 90418 90603 26 + . . scaffold700 TRF Tandem_Repeat 91531 91570 80 + . . scaffold700 GLEAN mRNA 95121 105865 0.999674 - . ID=CGI_10006011; scaffold700 TRF Tandem_Repeat 95685 95733 98 + . . scaffold700 TRF Tandem_Repeat 99214 99916 585 + . . scaffold700 TRF Tandem_Repeat 99341 99913 713 + . . scaffold700 TRF Tandem_Repeat 99355 99910 785 + . . scaffold700 TRF Tandem_Repeat 102476 102888 718 + . . scaffold700 GLEAN promoter 105866 106865 0.999674 - . ID=CGI_10006011; scaffold700 WUBlastX LTR_DIRS 106159 107592 825 + . . scaffold700 WUBlastX LTR_DIRS 107574 107783 84 + . . scaffold700 WUBlastX LTR_DIRS 107601 107861 26 + . . scaffold700 WUBlastX LTR_DIRS 107607 107816 34 + . . scaffold700 WUBlastX LTR_DIRS 108404 108877 287 - . . scaffold700 WUBlastX LTR_DIRS 109190 109267 32 - . . scaffold700 WUBlastX LTR_DIRS 109242 109490 120 - . . scaffold700 WUBlastX LTR_DIRS 109489 110304 380 - . . scaffold700 WUBlastX LTR_DIRS 110309 110506 167 - . . scaffold700 WUBlastX LTR_DIRS 110454 110744 85 - . . scaffold700 TRF Tandem_Repeat 110748 111141 646 + . . scaffold700 TRF Tandem_Repeat 110830 111441 442 + . . scaffold700 TRF Tandem_Repeat 111130 111451 527 + . . scaffold700 TRF Tandem_Repeat 122372 123462 1519 + . . scaffold700 TRF Tandem_Repeat 124197 124361 93 + . . scaffold700 TRF Tandem_Repeat 124250 124362 70 + . . scaffold700 GLEAN mRNA 124753 141882 0.573337 - . ID=CGI_10006012; scaffold700 GLEAN promoter 141883 142590 0.573337 - . ID=CGI_10006012; scaffold701 GLEAN mRNA 14742 16964 1 - . ID=CGI_10001210; scaffold701 GLEAN promoter 16965 17067 1 - . ID=CGI_10001210; scaffold705 GLEAN promoter 1553 2552 0.608342 + . ID=CGI_10015491; scaffold705 GLEAN mRNA 2553 3492 0.608342 + . ID=CGI_10015491; scaffold705 GLEAN mRNA 8744 11495 0.999676 - . ID=CGI_10015492; scaffold705 GLEAN promoter 11496 12495 0.999676 - . ID=CGI_10015492; scaffold705 GLEAN mRNA 20777 26055 0.992407 - . ID=CGI_10015493; scaffold705 GLEAN promoter 26056 27055 0.992407 - . ID=CGI_10015493; scaffold705 GLEAN promoter 27122 28121 0.999676 + . ID=CGI_10015494; scaffold705 GLEAN mRNA 28122 29907 0.999676 + . ID=CGI_10015494; scaffold705 TRF Tandem_Repeat 28925 28961 74 + . . scaffold705 GLEAN mRNA 30577 42393 1 - . ID=CGI_10015495; scaffold705 TRF Tandem_Repeat 36276 36330 110 + . . scaffold705 TRF Tandem_Repeat 39715 39790 134 + . . scaffold705 GLEAN promoter 42394 43393 1 - . ID=CGI_10015495; scaffold705 GLEAN mRNA 48433 49248 0.998246 - . ID=CGI_10015496; scaffold705 GLEAN promoter 49249 50248 0.998246 - . ID=CGI_10015496; scaffold705 GLEAN mRNA 54891 78972 0.408277 - . ID=CGI_10015497; scaffold705 WUBlastX LINE_RTE-BovB 56843 56971 28 + . . scaffold705 WUBlastX LINE_Penelope 59260 59949 373 + . . scaffold705 WUBlastX LINE_Penelope 59855 60289 120 + . . scaffold705 TRF Tandem_Repeat 76275 76350 71 + . . scaffold705 TRF Tandem_Repeat 76277 76370 61 + . . scaffold705 GLEAN promoter 78973 79972 0.408277 - . ID=CGI_10015497; scaffold705 GLEAN mRNA 79657 88361 0.999928 - . ID=CGI_10015498; scaffold705 TRF Tandem_Repeat 80754 81036 397 + . . scaffold705 GLEAN promoter 88362 89361 0.999928 - . ID=CGI_10015498; scaffold705 GLEAN mRNA 88656 89354 0.999361 - . ID=CGI_10015499; scaffold705 GLEAN promoter 89355 90354 0.999361 - . ID=CGI_10015499; scaffold705 GLEAN promoter 92500 93499 0.711609 + . ID=CGI_10015500; scaffold705 GLEAN mRNA 93500 98506 0.711609 + . ID=CGI_10015500; scaffold705 WUBlastX DNA_TcMar-Tc1 94049 94279 138 - . . scaffold705 WUBlastX DNA_TcMar-Tc1 94294 94770 241 - . . scaffold705 TRF Tandem_Repeat 103495 103542 55 + . . scaffold705 TRF Tandem_Repeat 104361 104411 50 + . . scaffold705 TRF Tandem_Repeat 104361 104410 64 + . . scaffold705 TRF Tandem_Repeat 105133 105180 78 + . . scaffold705 TRF Tandem_Repeat 107452 107501 73 + . . scaffold705 TRF Tandem_Repeat 107460 107501 57 + . . scaffold705 TRF Tandem_Repeat 107525 108483 1397 + . . scaffold705 WUBlastX LTR_Ngaro 110632 111078 230 - . . scaffold705 WUBlastX LTR_Ngaro 110632 111444 201 - . . scaffold705 WUBlastX LTR_Ngaro 111478 111741 26 - . . scaffold705 WUBlastX LTR_Ngaro 111558 112511 173 - . . scaffold705 WUBlastX LTR_Ngaro 112231 112899 341 - . . scaffold705 GLEAN promoter 121591 122590 0.766351 + . ID=CGI_10015501; scaffold705 GLEAN mRNA 122591 153114 0.766351 + . ID=CGI_10015501; scaffold705 TRF Tandem_Repeat 127641 127687 51 + . . scaffold705 TRF Tandem_Repeat 142015 142074 97 + . . scaffold705 TRF Tandem_Repeat 142023 142084 83 + . . scaffold705 GLEAN mRNA 155741 156466 1 - . ID=CGI_10015502; scaffold705 GLEAN promoter 156467 157466 1 - . ID=CGI_10015502; scaffold705 WUBlastX LINE_RTE-X 157874 158026 48 + . . scaffold705 WUBlastX LINE_RTE-X 160537 161289 176 - . . scaffold705 WUBlastX LINE_RTE-X 160666 162258 1056 - . . scaffold705 WUBlastX LINE_RTE-X 161323 162486 282 - . . scaffold705 GLEAN promoter 163578 164577 1 + . ID=CGI_10015503; scaffold705 GLEAN mRNA 164578 175118 1 + . ID=CGI_10015503; scaffold705 GLEAN promoter 175778 176777 1 + . ID=CGI_10015504; scaffold705 GLEAN mRNA 176778 182279 1 + . ID=CGI_10015504; scaffold705 GLEAN promoter 194968 195967 1 + . ID=CGI_10015505; scaffold705 GLEAN mRNA 195968 197421 1 + . ID=CGI_10015505; scaffold705 WUBlastX LINE_RTE-X 199052 199201 54 - . . scaffold705 WUBlastX LINE_RTE-X 199079 199201 65 - . . scaffold705 GLEAN mRNA 200321 211574 1 - . ID=CGI_10015506; scaffold705 TRF Tandem_Repeat 204657 205027 534 + . . scaffold705 GLEAN promoter 211575 212574 1 - . ID=CGI_10015506; scaffold705 GLEAN mRNA 212623 248876 0.992492 - . ID=CGI_10015507; scaffold705 TRF Tandem_Repeat 215186 215217 64 + . . scaffold705 TRF Tandem_Repeat 215622 215796 118 + . . scaffold705 TRF Tandem_Repeat 219741 220099 438 + . . scaffold705 TRF Tandem_Repeat 219763 220099 350 + . . scaffold705 TRF Tandem_Repeat 220770 220966 252 + . . scaffold705 TRF Tandem_Repeat 220801 220989 168 + . . scaffold705 TRF Tandem_Repeat 224332 224413 110 + . . scaffold705 GLEAN promoter 226428 227427 0.981558 + . ID=CGI_10015508; scaffold705 GLEAN mRNA 227428 229474 0.981558 + . ID=CGI_10015508; scaffold705 GLEAN promoter 248877 249876 0.992492 - . ID=CGI_10015507; scaffold705 GLEAN promoter 250973 251972 0.999998 + . ID=CGI_10015509; scaffold705 GLEAN mRNA 251973 253004 0.999998 + . ID=CGI_10015509; scaffold705 GLEAN promoter 253129 254128 0.501941 + . ID=CGI_10015510; scaffold705 GLEAN mRNA 254129 271765 0.501941 + . ID=CGI_10015510; scaffold705 WUBlastX LINE_RTE-X 266827 267594 124 + . . scaffold705 GLEAN mRNA 270566 274142 1 - . ID=CGI_10015511; scaffold705 WUBlastX DNA_IS4EU 270578 271276 210 - . . scaffold705 GLEAN promoter 274143 275142 1 - . ID=CGI_10015511; scaffold705 GLEAN promoter 275607 276606 0.648527 + . ID=CGI_10015512; scaffold705 GLEAN mRNA 276607 279671 0.648527 + . ID=CGI_10015512; scaffold705 GLEAN promoter 278869 279868 1 + . ID=CGI_10015513; scaffold705 GLEAN mRNA 279869 280216 1 + . ID=CGI_10015513; scaffold705 GLEAN mRNA 284129 288123 1 - . ID=CGI_10015514; scaffold705 GLEAN promoter 288124 289123 1 - . ID=CGI_10015514; scaffold705 GLEAN mRNA 315628 318785 0.810949 - . ID=CGI_10015515; scaffold705 TRF Tandem_Repeat 317815 317861 94 + . . scaffold705 WUBlastX LTR_Gypsy 318745 318960 101 - . . scaffold705 WUBlastX LTR_Gypsy 318781 318960 110 - . . scaffold705 GLEAN promoter 318786 319785 0.810949 - . ID=CGI_10015515; scaffold705 WUBlastX LTR_Gypsy 321713 321826 24 - . . scaffold705 WUBlastX LTR_Gypsy 321921 322220 44 - . . scaffold705 WUBlastX LTR_Gypsy 322035 322181 55 - . . scaffold705 GLEAN promoter 325554 326553 0.318359 + . ID=CGI_10015516; scaffold705 GLEAN mRNA 326554 329531 0.318359 + . ID=CGI_10015516; scaffold705 WUBlastX DNA_IS4EU 327127 327897 31 + . . scaffold705 WUBlastX DNA_IS4EU 327478 327894 71 + . . scaffold705 TRF Tandem_Repeat 330534 330576 77 + . . scaffold705 TRF Tandem_Repeat 332721 332761 82 + . . scaffold705 GLEAN promoter 339127 340126 0.495675 + . ID=CGI_10015517; scaffold705 GLEAN mRNA 340127 351838 0.495675 + . ID=CGI_10015517; scaffold705 TRF Tandem_Repeat 343732 343781 100 + . . scaffold705 WUBlastX LINE_Penelope 344889 344951 34 - . . scaffold705 WUBlastX LINE_Penelope 344892 344984 27 - . . scaffold705 WUBlastX LINE_Penelope 344995 345267 56 - . . scaffold705 WUBlastX LINE_Penelope 345474 345770 29 - . . scaffold705 WUBlastX LINE_Penelope 345612 345767 52 - . . scaffold705 TRF Tandem_Repeat 352973 353785 962 + . . scaffold705 TRF Tandem_Repeat 352976 353785 956 + . . scaffold705 TRF Tandem_Repeat 355442 355510 52 + . . scaffold705 WUBlastX LTR_Gypsy-Cigr 395602 395916 32 + . . scaffold705 WUBlastX LTR_Gypsy-Cigr 395671 395892 98 + . . scaffold705 GLEAN promoter 395870 396869 0.59015 + . ID=CGI_10015519; scaffold705 GLEAN mRNA 396870 397259 0.59015 + . ID=CGI_10015519; scaffold705 GLEAN mRNA 397843 425733 0.998279 - . ID=CGI_10015520; scaffold705 WUBlastX DNA_Kolobok-IS4 401559 402071 78 + . . scaffold705 WUBlastX DNA_IS4EU 401709 402068 95 + . . scaffold705 WUBlastX DNA_Kolobok-IS4 402700 403773 133 + . . scaffold705 WUBlastX DNA_IS4EU 403096 403779 164 + . . scaffold705 WUBlastX DNA_Kolobok-IS4 404780 405907 551 - . . scaffold705 WUBlastX DNA_Kolobok-IS4 406639 406899 46 - . . scaffold705 WUBlastX DNA_IS4EU 406672 406959 27 - . . scaffold705 WUBlastX LINE_L1-Tx1 407098 409239 1092 + . . scaffold705 WUBlastX LINE_L1-Tx1 409791 410612 85 + . . scaffold705 TRF Tandem_Repeat 410727 410762 72 + . . scaffold705 TRF Tandem_Repeat 414740 415051 419 + . . scaffold705 TRF Tandem_Repeat 418316 418376 95 + . . scaffold705 GLEAN promoter 425734 426733 0.998279 - . ID=CGI_10015520; scaffold705 TRF Tandem_Repeat 426174 426347 195 + . . scaffold705 TRF Tandem_Repeat 426174 426347 195 + . . scaffold705 TRF Tandem_Repeat 426955 427215 276 + . . scaffold705 TRF Tandem_Repeat 426961 427215 327 + . . scaffold705 TRF Tandem_Repeat 426961 427215 234 + . . scaffold707 WUBlastX LTR_Gypsy 2365 2487 25 + . . scaffold707 WUBlastX LTR_Gypsy 2598 2834 100 + . . scaffold707 WUBlastX LTR_Gypsy 2601 2897 85 + . . scaffold707 WUBlastX LTR_Gypsy 2905 4416 885 + . . scaffold707 WUBlastX LTR_Gypsy 4422 5198 251 + . . scaffold707 WUBlastX LTR_Gypsy 4422 5054 616 + . . scaffold707 WUBlastX LTR_Gypsy 5027 5407 228 + . . scaffold707 TRF Tandem_Repeat 6856 6896 82 + . . scaffold707 TRF Tandem_Repeat 8301 8343 86 + . . scaffold707 TRF Tandem_Repeat 11474 11512 51 + . . scaffold707 TRF Tandem_Repeat 14264 14451 83 + . . scaffold707 TRF Tandem_Repeat 15210 15952 915 + . . scaffold707 TRF Tandem_Repeat 16631 16689 109 + . . scaffold707 TRF Tandem_Repeat 17661 17710 100 + . . scaffold707 WUBlastX DNA_Harbinger 17972 18343 195 - . . scaffold707 WUBlastX DNA_Harbinger 18086 18406 43 - . . scaffold707 WUBlastX DNA_Harbinger 19260 19388 68 - . . scaffold707 WUBlastX DNA_Harbinger 19281 19373 69 - . . scaffold707 WUBlastX DNA_Harbinger 20739 21173 26 - . . scaffold707 WUBlastX DNA_Harbinger 20811 21170 93 - . . scaffold707 WUBlastX DNA_Harbinger 20871 21170 107 - . . scaffold707 GLEAN mRNA 22377 22544 0.618241 - . ID=CGI_10007720; scaffold707 GLEAN promoter 22545 23544 0.618241 - . ID=CGI_10007720; scaffold707 GLEAN promoter 27186 28185 0.998251 + . ID=CGI_10007721; scaffold707 TRF Tandem_Repeat 27985 28061 50 + . . scaffold707 GLEAN mRNA 28186 50322 0.998251 + . ID=CGI_10007721; scaffold707 WUBlastX DNA_Sola 37243 37593 90 + . . scaffold707 WUBlastX DNA_Sola 37267 37560 96 + . . scaffold707 WUBlastX LTR_Gypsy 40844 41017 109 - . . scaffold707 WUBlastX LTR_Gypsy 40871 41041 125 - . . scaffold707 WUBlastX DNA_Harbinger 43628 43801 52 + . . scaffold707 WUBlastX DNA_Harbinger 47451 47711 102 - . . scaffold707 WUBlastX DNA_Harbinger 47981 48094 61 - . . scaffold707 WUBlastX DNA_Harbinger 48230 48385 79 - . . scaffold707 WUBlastX DNA_Harbinger 48251 48412 40 - . . scaffold707 WUBlastX DNA_Harbinger 48490 48645 72 - . . scaffold707 WUBlastX DNA_Harbinger 48493 48606 110 - . . scaffold707 WUBlastX DNA_Harbinger 49201 49659 107 - . . scaffold707 WUBlastX DNA_Harbinger 49261 49629 157 - . . scaffold707 TRF Tandem_Repeat 51267 52226 1460 + . . scaffold707 TRF Tandem_Repeat 57389 58568 1340 + . . scaffold707 GLEAN mRNA 76525 76740 0.999974 - . ID=CGI_10007722; scaffold707 GLEAN promoter 76741 77740 0.999974 - . ID=CGI_10007722; scaffold707 TRF Tandem_Repeat 80497 80540 61 + . . scaffold707 WUBlastX LINE_L2 96972 97694 87 - . . scaffold707 TRF Tandem_Repeat 98304 98358 51 + . . scaffold707 GLEAN mRNA 109685 111822 0.511975 - . ID=CGI_10007723; scaffold707 GLEAN promoter 111823 112822 0.511975 - . ID=CGI_10007723; scaffold707 TRF Tandem_Repeat 112132 112169 76 + . . scaffold707 TRF Tandem_Repeat 112673 112735 94 + . . scaffold707 GLEAN mRNA 112772 144789 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 113150 113716 634 + . . scaffold707 TRF Tandem_Repeat 113150 113716 526 + . . scaffold707 TRF Tandem_Repeat 118435 118472 76 + . . scaffold707 TRF Tandem_Repeat 118588 118630 59 + . . scaffold707 TRF Tandem_Repeat 127244 127765 614 + . . scaffold707 TRF Tandem_Repeat 129094 129166 146 + . . scaffold707 TRF Tandem_Repeat 129211 129254 88 + . . scaffold707 TRF Tandem_Repeat 129956 130836 1045 + . . scaffold707 TRF Tandem_Repeat 129956 130859 1227 + . . scaffold707 TRF Tandem_Repeat 129958 130693 836 + . . scaffold707 TRF Tandem_Repeat 129958 130836 1023 + . . scaffold707 TRF Tandem_Repeat 130696 130836 210 + . . scaffold707 TRF Tandem_Repeat 130696 130859 202 + . . scaffold707 TRF Tandem_Repeat 130899 131006 116 + . . scaffold707 TRF Tandem_Repeat 132795 132897 50 + . . scaffold707 TRF Tandem_Repeat 132795 132897 98 + . . scaffold707 TRF Tandem_Repeat 133833 133892 120 + . . scaffold707 GLEAN promoter 144790 145789 0.810078 - . ID=CGI_10007724; scaffold707 TRF Tandem_Repeat 146139 146217 104 + . . scaffold707 TRF Tandem_Repeat 146139 146217 104 + . . scaffold707 GLEAN promoter 146246 147245 0.998094 + . ID=CGI_10007725; scaffold707 GLEAN mRNA 147246 152183 0.998094 + . ID=CGI_10007725; scaffold707 TRF Tandem_Repeat 148030 148068 69 + . . scaffold707 WUBlastX LTR_Gypsy 148260 148394 39 + . . scaffold707 TRF Tandem_Repeat 158896 158946 59 + . . scaffold707 GLEAN mRNA 161175 174774 0.99219 - . ID=CGI_10007726; scaffold707 TRF Tandem_Repeat 162232 162452 200 + . . scaffold707 TRF Tandem_Repeat 170586 170866 433 + . . scaffold707 TRF Tandem_Repeat 170586 170868 381 + . . scaffold707 TRF Tandem_Repeat 171243 171284 66 + . . scaffold707 GLEAN promoter 174775 175774 0.99219 - . ID=CGI_10007726; scaffold707 TRF Tandem_Repeat 175184 175455 187 + . . scaffold707 TRF Tandem_Repeat 175194 175455 212 + . . scaffold707 TRF Tandem_Repeat 176534 176603 122 + . . scaffold707 TRF Tandem_Repeat 176617 176643 54 + . . scaffold709 GLEAN promoter 1745 2744 0.999949 + . ID=CGI_10020075; scaffold709 GLEAN mRNA 2745 11030 0.999949 + . ID=CGI_10020075; scaffold709 TRF Tandem_Repeat 9112 9174 65 + . . scaffold709 GLEAN promoter 10717 11716 1 + . ID=CGI_10020076; scaffold709 GLEAN mRNA 11717 15112 1 + . ID=CGI_10020076; scaffold709 TRF Tandem_Repeat 13136 13233 90 + . . scaffold709 GLEAN promoter 15277 16276 0.999886 + . ID=CGI_10020077; scaffold709 GLEAN mRNA 16277 22556 0.999886 + . ID=CGI_10020077; scaffold709 TRF Tandem_Repeat 18719 18806 59 + . . scaffold709 TRF Tandem_Repeat 20278 20334 114 + . . scaffold709 GLEAN promoter 23887 24886 1 + . ID=CGI_10020078; scaffold709 WUBlastX LINE_RTE-X 23924 24457 123 - . . scaffold709 WUBlastX LINE_RTE-X 23969 24364 147 - . . scaffold709 GLEAN mRNA 24887 27299 1 + . ID=CGI_10020078; scaffold709 TRF Tandem_Repeat 32972 33070 103 + . . scaffold709 TRF Tandem_Repeat 32972 33092 109 + . . scaffold709 GLEAN promoter 38527 39526 0.650318 + . ID=CGI_10020079; scaffold709 GLEAN mRNA 39527 59315 0.650318 + . ID=CGI_10020079; scaffold709 TRF Tandem_Repeat 47107 47145 78 + . . scaffold709 TRF Tandem_Repeat 59852 59942 137 + . . scaffold709 GLEAN mRNA 60244 64676 1 - . ID=CGI_10020080; scaffold709 GLEAN promoter 64677 65676 1 - . ID=CGI_10020080; scaffold709 TRF Tandem_Repeat 65020 65186 298 + . . scaffold709 TRF Tandem_Repeat 65459 65561 188 + . . scaffold709 TRF Tandem_Repeat 66097 66139 86 + . . scaffold709 TRF Tandem_Repeat 66226 66284 109 + . . scaffold709 TRF Tandem_Repeat 66930 67785 1384 + . . scaffold709 WUBlastX LTR_Gypsy 72735 72941 48 - . . scaffold709 WUBlastX LTR_Ngaro 83028 83687 75 + . . scaffold709 WUBlastX LTR_Ngaro 83106 83552 88 + . . scaffold709 WUBlastX LTR_Ngaro 83238 83636 130 + . . scaffold709 WUBlastX LTR_Gypsy 84547 84690 78 + . . scaffold709 WUBlastX LTR_Gypsy 84684 84803 56 + . . scaffold709 WUBlastX LTR_Gypsy 87904 87984 37 + . . scaffold709 WUBlastX LTR_Gypsy 87960 88322 201 + . . scaffold709 TRF Tandem_Repeat 90993 91043 77 + . . scaffold709 TRF Tandem_Repeat 91420 91462 77 + . . scaffold709 TRF Tandem_Repeat 92827 92880 99 + . . scaffold709 GLEAN mRNA 100803 101012 0.999986 - . ID=CGI_10020081; scaffold709 GLEAN promoter 101013 102012 0.999986 - . ID=CGI_10020081; scaffold709 TRF Tandem_Repeat 102747 102837 128 + . . scaffold709 TRF Tandem_Repeat 104326 104432 115 + . . scaffold709 WUBlastX DNA_TcMar-Tc1 104971 105243 59 - . . scaffold709 WUBlastX DNA_TcMar-Tc1 105275 105418 54 - . . scaffold709 WUBlastX DNA_Maverick 113889 114209 103 - . . scaffold709 WUBlastX DNA_Maverick 114199 114447 48 - . . scaffold709 WUBlastX DNA_En-Spm 120709 121047 79 - . . scaffold709 WUBlastX DNA_En-Spm 121068 121355 92 - . . scaffold709 WUBlastX DNA_En-Spm 121369 121581 37 - . . scaffold709 WUBlastX DNA_En-Spm 121526 121867 119 - . . scaffold709 WUBlastX DNA_En-Spm 121875 122009 38 - . . scaffold709 TRF Tandem_Repeat 125318 125419 75 + . . scaffold709 TRF Tandem_Repeat 125334 125435 134 + . . scaffold709 GLEAN mRNA 130008 131534 0.999661 - . ID=CGI_10020082; scaffold709 GLEAN promoter 131535 132534 0.999661 - . ID=CGI_10020082; scaffold709 GLEAN promoter 137940 138939 0.999976 + . ID=CGI_10020083; scaffold709 GLEAN mRNA 138940 139146 0.999976 + . ID=CGI_10020083; scaffold709 TRF Tandem_Repeat 141405 141494 180 + . . scaffold709 WUBlastX LINE_L1-Tx1 144447 144830 29 - . . scaffold709 TRF Tandem_Repeat 154436 154483 96 + . . scaffold709 TRF Tandem_Repeat 169547 169602 60 + . . scaffold709 GLEAN promoter 171936 172935 0.999674 + . ID=CGI_10020084; scaffold709 GLEAN mRNA 172936 184729 0.999674 + . ID=CGI_10020084; scaffold709 TRF Tandem_Repeat 180899 180948 59 + . . scaffold709 GLEAN mRNA 185740 187728 0.998817 - . ID=CGI_10020085; scaffold709 GLEAN promoter 187729 188728 0.998817 - . ID=CGI_10020085; scaffold709 TRF Tandem_Repeat 194839 194905 89 + . . scaffold709 TRF Tandem_Repeat 195411 195439 58 + . . scaffold709 TRF Tandem_Repeat 195627 195675 98 + . . scaffold709 TRF Tandem_Repeat 198064 198130 89 + . . scaffold709 TRF Tandem_Repeat 200428 200460 66 + . . scaffold709 GLEAN mRNA 210572 212674 0.793245 - . ID=CGI_10020086; scaffold709 GLEAN promoter 212675 213674 0.793245 - . ID=CGI_10020086; scaffold709 WUBlastX LINE_RTE-X 214729 214803 27 - . . scaffold709 WUBlastX LINE_RTE-X 215153 215452 43 - . . scaffold709 WUBlastX LTR_Ngaro 216005 216547 131 + . . scaffold709 WUBlastX LTR_Ngaro 216706 217638 134 + . . scaffold709 WUBlastX LTR_Ngaro 216889 217650 448 + . . scaffold709 TRF Tandem_Repeat 218626 218708 64 + . . scaffold709 GLEAN mRNA 219970 220446 0.999366 - . ID=CGI_10020087; scaffold709 GLEAN promoter 220447 221446 0.999366 - . ID=CGI_10020087; scaffold709 GLEAN mRNA 220544 225982 0.788393 - . ID=CGI_10020088; scaffold709 TRF Tandem_Repeat 221819 221843 50 + . . scaffold709 TRF Tandem_Repeat 222435 222476 52 + . . scaffold709 GLEAN promoter 225983 226982 0.788393 - . ID=CGI_10020088; scaffold709 TRF Tandem_Repeat 229536 229560 50 + . . scaffold709 WUBlastX LINE_L1-Tx1 230653 234108 1065 - . . scaffold709 TRF Tandem_Repeat 238083 238232 87 + . . scaffold709 TRF Tandem_Repeat 239001 239754 1065 + . . scaffold709 TRF Tandem_Repeat 239866 239891 52 + . . scaffold709 TRF Tandem_Repeat 273465 274177 867 + . . scaffold709 TRF Tandem_Repeat 285696 285720 50 + . . scaffold709 TRF Tandem_Repeat 286608 286643 63 + . . scaffold709 GLEAN promoter 309064 310063 0.999026 + . ID=CGI_10020089; scaffold709 GLEAN mRNA 310064 322384 0.999026 + . ID=CGI_10020089; scaffold709 WUBlastX LINE_RTE-X 314550 315197 69 + . . scaffold709 WUBlastX LINE_RTE-X 315030 315245 35 + . . scaffold709 WUBlastX LINE_RTE-X 315519 315611 24 + . . scaffold709 WUBlastX LINE_RTE-X 315586 315678 25 + . . scaffold709 WUBlastX DNA_Sola 324851 326029 57 + . . scaffold709 WUBlastX DNA_Sola 325058 326125 135 + . . scaffold709 WUBlastX DNA_Sola 326014 326154 44 + . . scaffold709 WUBlastX DNA_Sola 326092 326172 21 + . . scaffold709 WUBlastX DNA_hAT-hATw 337223 337987 203 - . . scaffold709 WUBlastX DNA_hAT-hATw 337352 337987 207 - . . scaffold709 WUBlastX DNA_hAT-hATw 338091 338573 28 - . . scaffold709 WUBlastX DNA_hAT-hATw 338388 338573 69 - . . scaffold709 WUBlastX DNA_hAT-hATw 339209 339334 36 - . . scaffold709 WUBlastX LINE_L1-Tx1 348152 348607 49 - . . scaffold709 WUBlastX LINE_L1-Tx1 348224 348709 63 - . . scaffold709 TRF Tandem_Repeat 357576 357624 75 + . . scaffold709 TRF Tandem_Repeat 366085 366208 63 + . . scaffold709 TRF Tandem_Repeat 366600 366684 73 + . . scaffold709 TRF Tandem_Repeat 366600 366723 63 + . . scaffold709 TRF Tandem_Repeat 368739 368783 54 + . . scaffold709 TRF Tandem_Repeat 368967 369266 307 + . . scaffold709 TRF Tandem_Repeat 368974 369081 132 + . . scaffold709 TRF Tandem_Repeat 369093 369266 231 + . . scaffold709 TRF Tandem_Repeat 369938 370091 173 + . . scaffold709 TRF Tandem_Repeat 369946 370069 162 + . . scaffold709 TRF Tandem_Repeat 372532 372562 53 + . . scaffold709 TRF Tandem_Repeat 377465 377527 126 + . . scaffold709 WUBlastX LINE_RTE-X 380923 381219 194 + . . scaffold709 WUBlastX LINE_RTE-X 381240 381458 148 + . . scaffold709 WUBlastX LINE_RTE-X 381458 382123 108 + . . scaffold709 TRF Tandem_Repeat 388885 388909 50 + . . scaffold709 TRF Tandem_Repeat 390019 390108 105 + . . scaffold709 GLEAN mRNA 393082 407652 0.999999 - . ID=CGI_10020090; scaffold709 GLEAN promoter 402133 403132 0.645444 + . ID=CGI_10020091; scaffold709 GLEAN mRNA 403133 404530 0.645444 + . ID=CGI_10020091; scaffold709 GLEAN promoter 406943 407942 0.574856 + . ID=CGI_10020092; scaffold709 TRF Tandem_Repeat 407509 407624 86 + . . scaffold709 TRF Tandem_Repeat 407509 407632 84 + . . scaffold709 TRF Tandem_Repeat 407514 407625 104 + . . scaffold709 TRF Tandem_Repeat 407515 407623 66 + . . scaffold709 TRF Tandem_Repeat 407546 407618 75 + . . scaffold709 GLEAN promoter 407653 408652 0.999999 - . ID=CGI_10020090; scaffold709 GLEAN mRNA 407943 427071 0.574856 + . ID=CGI_10020092; scaffold709 GLEAN mRNA 411384 420120 0.999868 - . ID=CGI_10020093; scaffold709 TRF Tandem_Repeat 412063 412790 956 + . . scaffold709 GLEAN promoter 420121 421120 0.999868 - . ID=CGI_10020093; scaffold709 GLEAN mRNA 432444 444492 0.296535 - . ID=CGI_10020094; scaffold709 TRF Tandem_Repeat 435683 436016 230 + . . scaffold709 GLEAN promoter 444288 445287 0.557709 + . ID=CGI_10020095; scaffold709 GLEAN promoter 444493 445492 0.296535 - . ID=CGI_10020094; scaffold709 GLEAN mRNA 445288 452232 0.557709 + . ID=CGI_10020095; scaffold709 GLEAN promoter 451267 452266 0.998225 + . ID=CGI_10020096; scaffold709 GLEAN mRNA 452267 463068 0.998225 + . ID=CGI_10020096; scaffold709 GLEAN mRNA 455264 463644 0.896931 - . ID=CGI_10020097; scaffold709 GLEAN promoter 463645 464644 0.896931 - . ID=CGI_10020097; scaffold709 TRF Tandem_Repeat 480195 480235 82 + . . scaffold709 WUBlastX LINE_CR1-L2 481747 481965 37 - . . scaffold709 TRF Tandem_Repeat 498275 498308 59 + . . scaffold709 TRF Tandem_Repeat 498329 498503 85 + . . scaffold709 TRF Tandem_Repeat 498343 498540 116 + . . scaffold709 TRF Tandem_Repeat 498864 499053 134 + . . scaffold709 TRF Tandem_Repeat 499052 499262 172 + . . scaffold709 TRF Tandem_Repeat 499337 499423 122 + . . scaffold709 TRF Tandem_Repeat 502484 502550 134 + . . scaffold709 TRF Tandem_Repeat 512652 512825 102 + . . scaffold709 TRF Tandem_Repeat 525290 525319 60 + . . scaffold709 TRF Tandem_Repeat 543427 543467 55 + . . scaffold709 WUBlastX DNA_En-Spm 545074 546123 104 + . . scaffold709 WUBlastX DNA_En-Spm 545074 545520 129 + . . scaffold709 WUBlastX DNA_En-Spm 545651 546928 38 + . . scaffold709 WUBlastX DNA_En-Spm 545786 546214 107 + . . scaffold709 TRF Tandem_Repeat 548444 548800 223 + . . scaffold709 TRF Tandem_Repeat 548645 548728 51 + . . scaffold709 TRF Tandem_Repeat 557331 557389 118 + . . scaffold709 GLEAN promoter 558172 559171 1 + . ID=CGI_10020098; scaffold709 GLEAN mRNA 559172 561784 1 + . ID=CGI_10020098; scaffold709 TRF Tandem_Repeat 564287 564318 64 + . . scaffold709 TRF Tandem_Repeat 577875 577900 52 + . . scaffold709 TRF Tandem_Repeat 577935 577994 120 + . . scaffold709 TRF Tandem_Repeat 591343 591449 142 + . . scaffold709 TRF Tandem_Repeat 592696 592841 103 + . . scaffold709 TRF Tandem_Repeat 592751 592841 146 + . . scaffold709 WUBlastX LINE_L2 595447 595887 31 + . . scaffold709 WUBlastX LINE_L2 595516 595905 84 + . . scaffold709 TRF Tandem_Repeat 614934 614963 60 + . . scaffold709 WUBlastX LINE_RTE-X 615719 616258 151 - . . scaffold709 WUBlastX LINE_RTE-X 616269 616505 32 - . . scaffold709 WUBlastX LINE_RTE-X 616278 616466 132 - . . scaffold709 WUBlastX LINE_L2 620056 620310 128 - . . scaffold709 WUBlastX LINE_L2 620056 620247 130 - . . scaffold709 GLEAN promoter 620931 621930 0.531615 + . ID=CGI_10020099; scaffold709 TRF Tandem_Repeat 620950 620990 82 + . . scaffold709 GLEAN mRNA 621931 622374 0.531615 + . ID=CGI_10020099; scaffold71 WUBlastX LTR_Ngaro 32735 33667 255 - . . scaffold71 WUBlastX LTR_Ngaro 33688 34092 331 - . . scaffold71 WUBlastX LTR_Ngaro 34005 34505 280 - . . scaffold71 WUBlastX LTR_Ngaro 34445 35245 499 - . . scaffold71 WUBlastX LTR_Ngaro 35428 36228 99 - . . scaffold71 TRF Tandem_Repeat 36422 36916 559 + . . scaffold71 TRF Tandem_Repeat 47843 47867 50 + . . scaffold71 TRF Tandem_Repeat 54020 54044 50 + . . scaffold71 GLEAN mRNA 83698 84711 0.593295 - . ID=CGI_10015052; scaffold71 GLEAN promoter 84712 85711 0.593295 - . ID=CGI_10015052; scaffold71 TRF Tandem_Repeat 89676 89705 60 + . . scaffold71 GLEAN promoter 90987 91986 0.681585 + . ID=CGI_10015053; scaffold71 TRF Tandem_Repeat 91456 91520 130 + . . scaffold71 GLEAN mRNA 91987 115622 0.681585 + . ID=CGI_10015053; scaffold71 TRF Tandem_Repeat 99505 99583 158 + . . scaffold71 TRF Tandem_Repeat 111763 112127 395 + . . scaffold71 GLEAN mRNA 116684 118435 0.999661 - . ID=CGI_10015054; scaffold71 GLEAN promoter 118436 119435 0.999661 - . ID=CGI_10015054; scaffold71 GLEAN mRNA 124818 126563 0.999661 - . ID=CGI_10015055; scaffold71 GLEAN promoter 126564 127563 0.999661 - . ID=CGI_10015055; scaffold71 GLEAN promoter 126807 127806 0.9913 + . ID=CGI_10015056; scaffold71 GLEAN mRNA 127807 161553 0.9913 + . ID=CGI_10015056; scaffold71 TRF Tandem_Repeat 128385 128761 533 + . . scaffold71 TRF Tandem_Repeat 140037 141128 1094 + . . scaffold71 TRF Tandem_Repeat 142765 142798 68 + . . scaffold71 TRF Tandem_Repeat 150378 151064 372 + . . scaffold71 TRF Tandem_Repeat 150389 150563 181 + . . scaffold71 TRF Tandem_Repeat 150414 150717 249 + . . scaffold71 TRF Tandem_Repeat 150796 150985 164 + . . scaffold71 TRF Tandem_Repeat 174338 174407 140 + . . scaffold71 WUBlastX DNA_Harbinger 180692 181306 368 + . . scaffold71 WUBlastX DNA_Harbinger 181306 181674 26 - . . scaffold71 WUBlastX DNA_Harbinger 181306 181533 39 - . . scaffold71 TRF Tandem_Repeat 181687 181728 84 + . . scaffold71 TRF Tandem_Repeat 181990 182047 64 + . . scaffold71 TRF Tandem_Repeat 186858 186898 73 + . . scaffold71 WUBlastX LINE_L1 192003 192290 79 - . . scaffold71 WUBlastX LINE_L1-Tx1 192060 192371 78 - . . scaffold71 WUBlastX LINE_RTE-X 192373 193071 96 + . . scaffold71 WUBlastX LINE_RTE-X 193090 193449 113 + . . scaffold71 WUBlastX LINE_RTE-X 193135 193419 139 + . . scaffold71 WUBlastX LINE_RTE-X 193398 193790 42 + . . scaffold71 WUBlastX LINE_RTE-X 193413 193571 54 + . . scaffold71 WUBlastX LINE_RTE-X 193422 193949 22 + . . scaffold71 WUBlastX LINE_RTE-X 193437 193697 44 + . . scaffold71 TRF Tandem_Repeat 194349 194400 104 + . . scaffold71 TRF Tandem_Repeat 207253 207282 51 + . . scaffold71 WUBlastX LTR_Gypsy 208622 208690 31 - . . scaffold71 WUBlastX LTR_Gypsy 208628 208720 23 - . . scaffold71 WUBlastX LTR_Gypsy 208640 208753 20 - . . scaffold71 WUBlastX LTR_Gypsy 208758 211658 2424 - . . scaffold71 TRF Tandem_Repeat 211773 211858 165 + . . scaffold71 TRF Tandem_Repeat 221088 221281 248 + . . scaffold71 GLEAN promoter 221592 222591 0.816594 + . ID=CGI_10015057; scaffold71 GLEAN mRNA 222592 224747 0.816594 + . ID=CGI_10015057; scaffold71 WUBlastX DNA_Harbinger 225333 225536 57 + . . scaffold71 WUBlastX DNA_Harbinger 226811 226966 57 - . . scaffold71 WUBlastX DNA_Harbinger 227387 227548 31 - . . scaffold71 TRF Tandem_Repeat 227769 227830 124 + . . scaffold71 GLEAN promoter 229125 230124 0.816042 + . ID=CGI_10015058; scaffold71 GLEAN mRNA 230125 232307 0.816042 + . ID=CGI_10015058; scaffold71 WUBlastX DNA_IS4EU 234302 234493 28 - . . scaffold71 WUBlastX DNA_IS4EU 234561 234677 24 - . . scaffold71 WUBlastX DNA_IS4EU 234582 234680 50 - . . scaffold71 TRF Tandem_Repeat 254902 254938 65 + . . scaffold71 WUBlastX LINE_RTE-X 265030 265167 55 + . . scaffold71 WUBlastX LINE_RTE-X 265078 265167 61 + . . scaffold71 WUBlastX LINE_RTE-X 265157 265849 39 + . . scaffold71 WUBlastX LINE_L2 265455 266858 128 + . . scaffold71 WUBlastX LINE_RTE-X 265701 266918 341 + . . scaffold71 WUBlastX LINE_RTE-X 265863 266864 457 + . . scaffold71 WUBlastX LINE_RTE-X 266857 267309 205 + . . scaffold71 WUBlastX LINE_RTE-X 266857 267444 197 + . . scaffold71 GLEAN promoter 267268 268267 0.588785 + . ID=CGI_10015059; scaffold71 WUBlastX LINE_RTE-X 267522 267875 46 + . . scaffold71 WUBlastX LINE_RTE-X 267597 267902 88 + . . scaffold71 GLEAN mRNA 268268 281594 0.588785 + . ID=CGI_10015059; scaffold71 WUBlastX LTR_Gypsy 269831 269959 24 + . . scaffold71 WUBlastX LTR_Ngaro 270517 272028 431 + . . scaffold71 WUBlastX LTR_Ngaro 270763 272100 765 + . . scaffold71 WUBlastX LTR_Ngaro 272087 272968 243 + . . scaffold71 WUBlastX LTR_Ngaro 272141 272872 269 + . . scaffold71 WUBlastX LINE_Penelope 281786 282316 58 - . . scaffold71 TRF Tandem_Repeat 287309 287349 50 + . . scaffold71 TRF Tandem_Repeat 293142 293179 60 + . . scaffold71 TRF Tandem_Repeat 296104 296285 364 + . . scaffold71 TRF Tandem_Repeat 306345 306557 336 + . . scaffold71 TRF Tandem_Repeat 306347 306563 299 + . . scaffold71 TRF Tandem_Repeat 307209 307425 272 + . . scaffold71 TRF Tandem_Repeat 307209 307404 275 + . . scaffold71 GLEAN promoter 307570 308569 0.99957 + . ID=CGI_10015060; scaffold71 GLEAN mRNA 308570 322293 0.99957 + . ID=CGI_10015060; scaffold71 TRF Tandem_Repeat 311969 312011 68 + . . scaffold71 GLEAN mRNA 323522 334949 0.210556 - . ID=CGI_10015061; scaffold71 TRF Tandem_Repeat 325832 326806 1797 + . . scaffold71 TRF Tandem_Repeat 330182 330417 382 + . . scaffold71 TRF Tandem_Repeat 333056 333098 86 + . . scaffold71 GLEAN promoter 334384 335383 0.999172 + . ID=CGI_10015062; scaffold71 GLEAN promoter 334950 335949 0.210556 - . ID=CGI_10015061; scaffold71 GLEAN mRNA 335384 359617 0.999172 + . ID=CGI_10015062; scaffold71 TRF Tandem_Repeat 353122 353277 204 + . . scaffold71 TRF Tandem_Repeat 358389 358515 227 + . . scaffold71 GLEAN mRNA 361677 372544 0.99805 - . ID=CGI_10015063; scaffold71 GLEAN promoter 363270 364269 1 + . ID=CGI_10015064; scaffold71 GLEAN mRNA 364270 371234 1 + . ID=CGI_10015064; scaffold71 TRF Tandem_Repeat 364462 364506 90 + . . scaffold71 TRF Tandem_Repeat 366311 366365 110 + . . scaffold71 GLEAN promoter 372545 373544 0.99805 - . ID=CGI_10015063; scaffold71 GLEAN mRNA 372808 376336 0.733117 - . ID=CGI_10015065; scaffold71 GLEAN promoter 376337 377336 0.733117 - . ID=CGI_10015065; scaffold71 GLEAN mRNA 376339 393645 0.969076 - . ID=CGI_10015066; scaffold71 GLEAN promoter 377143 378142 1 + . ID=CGI_10015067; scaffold71 GLEAN mRNA 378143 381669 1 + . ID=CGI_10015067; scaffold71 TRF Tandem_Repeat 378325 378382 116 + . . scaffold71 TRF Tandem_Repeat 383010 383061 104 + . . scaffold71 GLEAN promoter 393646 394645 0.969076 - . ID=CGI_10015066; scaffold71 TRF Tandem_Repeat 402466 402523 89 + . . scaffold71 WUBlastX LTR_Gypsy-Cigr 403904 404026 37 + . . scaffold71 WUBlastX LTR_Gypsy-Cigr 404050 404379 108 + . . scaffold71 WUBlastX DNA_P 406008 406241 41 + . . scaffold71 WUBlastX DNA_Sola 415381 415590 63 - . . scaffold71 GLEAN mRNA 416160 418666 0.999766 - . ID=CGI_10015068; scaffold71 GLEAN promoter 418667 419666 0.999766 - . ID=CGI_10015068; scaffold710 TRF Tandem_Repeat 1531 1575 63 + . . scaffold710 GLEAN mRNA 3609 3965 0.999372 - . ID=CGI_10000881; scaffold710 GLEAN promoter 3966 4965 0.999372 - . ID=CGI_10000881; scaffold710 WUBlastX LINE_RTE-X 6092 6388 22 + . . scaffold710 WUBlastX LINE_RTE-X 6197 6388 54 + . . scaffold710 WUBlastX LINE_RTE-X 6230 6505 45 + . . scaffold710 WUBlastX LINE_RTE-X 6230 6388 74 + . . scaffold711 TRF Tandem_Repeat 5612 5657 65 + . . scaffold711 TRF Tandem_Repeat 6216 6273 109 + . . scaffold711 WUBlastX LTR_Gypsy 13310 15094 626 - . . scaffold711 WUBlastX LTR_Copia 16196 16369 22 - . . scaffold711 WUBlastX LTR_Gypsy 17180 19801 2434 - . . scaffold711 WUBlastX LTR_Gypsy 19798 20214 386 - . . scaffold711 WUBlastX LTR_Gypsy 20247 20996 347 - . . scaffold711 WUBlastX LTR_Gypsy 20658 21068 27 - . . scaffold711 WUBlastX LTR_Gypsy 21176 22036 108 - . . scaffold711 WUBlastX LTR_Gypsy 21320 22117 403 - . . scaffold711 WUBlastX LTR_Gypsy 21545 22249 28 - . . scaffold711 WUBlastX LINE_RTE-X 25479 25925 79 + . . scaffold711 TRF Tandem_Repeat 27103 27135 66 + . . scaffold711 WUBlastX LINE_CR1 29688 30044 34 + . . scaffold711 WUBlastX LINE_CR1-L2 29835 30044 67 + . . scaffold711 WUBlastX LINE_L2 29880 30386 128 + . . scaffold711 TRF Tandem_Repeat 31894 31921 56 + . . scaffold711 TRF Tandem_Repeat 34962 35059 151 + . . scaffold711 TRF Tandem_Repeat 38756 38889 198 + . . scaffold711 TRF Tandem_Repeat 39681 39739 118 + . . scaffold711 WUBlastX LINE_L1-Tx1 50365 51207 22 - . . scaffold711 WUBlastX LINE_L1-Tx1 50389 50859 92 - . . scaffold711 TRF Tandem_Repeat 67983 68281 202 + . . scaffold711 TRF Tandem_Repeat 97308 97351 88 + . . scaffold711 TRF Tandem_Repeat 99313 99409 194 + . . scaffold711 TRF Tandem_Repeat 103473 103517 72 + . . scaffold711 TRF Tandem_Repeat 104167 104236 122 + . . scaffold711 TRF Tandem_Repeat 121762 123397 2091 + . . scaffold711 TRF Tandem_Repeat 126780 126846 53 + . . scaffold711 TRF Tandem_Repeat 127361 127390 51 + . . scaffold711 TRF Tandem_Repeat 129791 129857 55 + . . scaffold711 TRF Tandem_Repeat 129791 129857 73 + . . scaffold711 TRF Tandem_Repeat 129922 129988 55 + . . scaffold711 TRF Tandem_Repeat 129922 129988 73 + . . scaffold711 WUBlastX LTR_Ngaro 133364 134110 147 + . . scaffold711 WUBlastX LTR_Ngaro 134228 134470 126 + . . scaffold711 TRF Tandem_Repeat 141564 141767 311 + . . scaffold711 TRF Tandem_Repeat 160680 160734 65 + . . scaffold711 TRF Tandem_Repeat 160683 160738 71 + . . scaffold711 TRF Tandem_Repeat 167099 167139 55 + . . scaffold711 TRF Tandem_Repeat 169535 171128 1740 + . . scaffold711 TRF Tandem_Repeat 169535 171128 1836 + . . scaffold711 TRF Tandem_Repeat 171870 171903 50 + . . scaffold711 WUBlastX DNA_hAT-Ac 177198 177581 33 - . . scaffold711 WUBlastX DNA_hAT-Ac 177324 178052 159 - . . scaffold711 WUBlastX DNA_hAT 177855 178133 39 - . . scaffold711 WUBlastX DNA_hAT-Ac 178280 178663 33 - . . scaffold711 WUBlastX DNA_hAT-Ac 178406 179134 159 - . . scaffold711 WUBlastX DNA_hAT-Tag1 181096 181419 27 - . . scaffold711 WUBlastX DNA_hAT-Ac 181165 182679 457 - . . scaffold711 WUBlastX DNA_hAT-Ac 182953 183165 35 - . . scaffold711 WUBlastX DNA_hAT-Ac 182989 183246 101 - . . scaffold711 WUBlastX DNA_hAT 183366 183527 41 - . . scaffold711 WUBlastX DNA_hAT-Ac 183366 183494 41 - . . scaffold711 TRF Tandem_Repeat 184165 184219 110 + . . scaffold711 TRF Tandem_Repeat 195077 195137 104 + . . scaffold711 TRF Tandem_Repeat 196054 196098 90 + . . scaffold711 GLEAN promoter 202987 203986 0.999862 + . ID=CGI_10009503; scaffold711 GLEAN mRNA 203987 217453 0.999862 + . ID=CGI_10009503; scaffold711 TRF Tandem_Repeat 214492 214536 90 + . . scaffold711 TRF Tandem_Repeat 215387 215431 90 + . . scaffold711 TRF Tandem_Repeat 230229 230369 210 + . . scaffold712 GLEAN promoter 1 78 1 + . ID=CGI_10016468; scaffold712 GLEAN mRNA 79 4451 1 + . ID=CGI_10016468; scaffold712 GLEAN mRNA 3927 13566 0.999092 - . ID=CGI_10016469; scaffold712 TRF Tandem_Repeat 6285 7751 720 + . . scaffold712 TRF Tandem_Repeat 6452 7752 1773 + . . scaffold712 TRF Tandem_Repeat 8834 9593 958 + . . scaffold712 TRF Tandem_Repeat 8834 9602 778 + . . scaffold712 TRF Tandem_Repeat 8835 9593 911 + . . scaffold712 TRF Tandem_Repeat 8836 9602 943 + . . scaffold712 TRF Tandem_Repeat 9331 9421 74 + . . scaffold712 GLEAN promoter 10505 11504 0.249757 + . ID=CGI_10016470; scaffold712 GLEAN mRNA 11505 33312 0.249757 + . ID=CGI_10016470; scaffold712 GLEAN promoter 13567 14566 0.999092 - . ID=CGI_10016469; scaffold712 GLEAN mRNA 15269 16378 0.999411 - . ID=CGI_10016471; scaffold712 GLEAN promoter 16379 17378 0.999411 - . ID=CGI_10016471; scaffold712 TRF Tandem_Repeat 16897 17162 274 + . . scaffold712 TRF Tandem_Repeat 16897 17103 265 + . . scaffold712 TRF Tandem_Repeat 16897 17162 320 + . . scaffold712 GLEAN mRNA 19004 48144 0.99935 - . ID=CGI_10016472; scaffold712 TRF Tandem_Repeat 22699 22960 461 + . . scaffold712 GLEAN promoter 32336 33335 1 + . ID=CGI_10016473; scaffold712 GLEAN mRNA 33336 34490 1 + . ID=CGI_10016473; scaffold712 TRF Tandem_Repeat 39087 39126 80 + . . scaffold712 GLEAN promoter 47539 48538 1 + . ID=CGI_10016474; scaffold712 GLEAN promoter 48145 49144 0.99935 - . ID=CGI_10016472; scaffold712 GLEAN mRNA 48539 54649 1 + . ID=CGI_10016474; scaffold712 TRF Tandem_Repeat 52405 52437 66 + . . scaffold712 GLEAN mRNA 57362 65387 1 - . ID=CGI_10016475; scaffold712 TRF Tandem_Repeat 65025 65070 92 + . . scaffold712 GLEAN promoter 65388 66387 1 - . ID=CGI_10016475; scaffold712 GLEAN promoter 68933 69932 0.990259 + . ID=CGI_10016476; scaffold712 TRF Tandem_Repeat 69097 69154 116 + . . scaffold712 GLEAN mRNA 69933 76366 0.990259 + . ID=CGI_10016476; scaffold712 TRF Tandem_Repeat 76508 76546 53 + . . scaffold712 TRF Tandem_Repeat 80609 80644 65 + . . scaffold712 WUBlastX LINE_L2 86773 87108 51 + . . scaffold712 WUBlastX LINE_Penelope 87771 88046 27 - . . scaffold712 WUBlastX LINE_Penelope 87807 88004 96 - . . scaffold712 WUBlastX LINE_Penelope 114773 115012 52 - . . scaffold712 TRF Tandem_Repeat 122570 122636 89 + . . scaffold712 TRF Tandem_Repeat 124216 124282 89 + . . scaffold712 TRF Tandem_Repeat 124777 124802 52 + . . scaffold712 TRF Tandem_Repeat 124800 124828 58 + . . scaffold712 TRF Tandem_Repeat 125017 125065 98 + . . scaffold712 TRF Tandem_Repeat 127447 127513 80 + . . scaffold712 WUBlastX LTR_Gypsy 132414 133310 375 - . . scaffold712 WUBlastX LTR_Gypsy 132834 133310 402 - . . scaffold712 WUBlastX LTR_Gypsy 133316 133420 55 - . . scaffold712 WUBlastX LTR_Gypsy 134698 135129 32 - . . scaffold712 WUBlastX LTR_Gypsy 134773 135090 35 - . . scaffold712 WUBlastX LTR_Gypsy 134878 135096 75 - . . scaffold712 WUBlastX LTR_Gypsy 135093 135356 85 - . . scaffold712 WUBlastX LTR_Gypsy 135180 135389 124 - . . scaffold712 WUBlastX LTR_Gypsy 135222 135389 135 - . . scaffold712 WUBlastX LTR_Gypsy 135335 135511 74 - . . scaffold712 WUBlastX LTR_Gypsy 135350 135565 27 - . . scaffold712 WUBlastX LTR_Gypsy 135613 135759 38 - . . scaffold712 WUBlastX LTR_Gypsy 135613 135702 58 - . . scaffold712 WUBlastX LTR_Gypsy 135796 136017 30 - . . scaffold712 TRF Tandem_Repeat 138361 138400 53 + . . scaffold712 TRF Tandem_Repeat 138764 138961 200 + . . scaffold712 TRF Tandem_Repeat 138974 139165 161 + . . scaffold712 GLEAN promoter 143650 144649 1 + . ID=CGI_10016478; scaffold712 GLEAN mRNA 144650 156180 1 + . ID=CGI_10016478; scaffold712 TRF Tandem_Repeat 151940 151974 61 + . . scaffold712 TRF Tandem_Repeat 152593 152640 60 + . . scaffold712 WUBlastX LINE_L1-Tx1 152784 153791 120 - . . scaffold712 WUBlastX LINE_L1 153728 154975 289 - . . scaffold712 WUBlastX LINE_L1-Tx1 153965 155245 504 - . . scaffold712 WUBlastX LINE_L1 153983 155566 315 - . . scaffold712 WUBlastX LINE_Jockey 155787 155897 29 - . . scaffold712 WUBlastX LTR_Ngaro 162946 163107 72 - . . scaffold712 WUBlastX LTR_Ngaro 163106 163405 77 - . . scaffold712 WUBlastX LTR_Ngaro 164402 165310 52 + . . scaffold712 WUBlastX LTR_Ngaro 164640 164954 79 + . . scaffold712 WUBlastX LTR_Ngaro 164691 165383 168 + . . scaffold712 WUBlastX LTR_Ngaro 164691 164996 196 + . . scaffold712 WUBlastX LTR_Ngaro 165295 165774 114 + . . scaffold712 TRF Tandem_Repeat 172213 172248 54 + . . scaffold712 WUBlastX LINE_RTE-X 178417 178776 63 + . . scaffold712 WUBlastX DNA_Harbinger 196641 197021 193 - . . scaffold712 WUBlastX DNA_IS4EU 198756 200033 527 + . . scaffold712 WUBlastX DNA_IS4EU 200041 200256 148 + . . scaffold712 WUBlastX DNA_IS4EU 200891 201763 90 - . . scaffold712 WUBlastX DNA_IS4EU 200927 201658 212 - . . scaffold712 WUBlastX DNA_IS4EU 202190 202372 79 - . . scaffold712 WUBlastX DNA_IS4EU 202208 202414 52 - . . scaffold712 WUBlastX DNA_IS4EU 202223 202531 35 - . . scaffold712 WUBlastX DNA_IS4EU 202626 202865 100 - . . scaffold712 WUBlastX DNA_IS4EU 202829 203152 155 - . . scaffold712 TRF Tandem_Repeat 203900 204690 1083 + . . scaffold712 WUBlastX LINE_L1-Tx1 214878 215207 88 - . . scaffold712 WUBlastX RC_Helitron 222080 222904 276 + . . scaffold712 WUBlastX DNA_Helitron 222275 223096 79 + . . scaffold712 WUBlastX RC_Helitron 223788 226907 1488 + . . scaffold712 WUBlastX RC_Helitron 224994 226931 1511 + . . scaffold712 WUBlastX RC_Helitron 226931 228001 745 + . . scaffold712 WUBlastX DNA_IS4EU 228171 228659 51 + . . scaffold712 TRF Tandem_Repeat 229224 229288 130 + . . scaffold712 WUBlastX DNA_IS4EU 229360 229560 20 + . . scaffold712 WUBlastX DNA_IS4EU 229721 230626 436 + . . scaffold712 WUBlastX DNA_IS4EU 229871 230629 490 + . . scaffold712 WUBlastX DNA_IS4EU 231008 231622 167 - . . scaffold712 WUBlastX DNA_IS4EU 231437 232183 141 - . . scaffold712 WUBlastX DNA_IS4EU 231506 232369 100 - . . scaffold712 WUBlastX DNA_IS4EU 231773 232549 23 - . . scaffold712 WUBlastX DNA_IS4EU 232641 232934 61 - . . scaffold712 TRF Tandem_Repeat 233060 233106 94 + . . scaffold712 GLEAN mRNA 237211 239833 0.914142 - . ID=CGI_10016480; scaffold712 GLEAN promoter 239834 240833 0.914142 - . ID=CGI_10016480; scaffold712 TRF Tandem_Repeat 240414 240456 86 + . . scaffold712 TRF Tandem_Repeat 240454 240485 64 + . . scaffold712 TRF Tandem_Repeat 262253 262298 92 + . . scaffold712 TRF Tandem_Repeat 296083 296115 66 + . . scaffold712 TRF Tandem_Repeat 297204 297233 60 + . . scaffold712 TRF Tandem_Repeat 301799 302064 333 + . . scaffold712 TRF Tandem_Repeat 312912 312978 134 + . . scaffold712 TRF Tandem_Repeat 313216 313261 92 + . . scaffold712 GLEAN promoter 313403 314402 1 + . ID=CGI_10016481; scaffold712 TRF Tandem_Repeat 313920 313978 102 + . . scaffold712 GLEAN mRNA 314403 315303 1 + . ID=CGI_10016481; scaffold712 GLEAN promoter 317343 318342 1 + . ID=CGI_10016482; scaffold712 GLEAN mRNA 318343 321944 1 + . ID=CGI_10016482; scaffold712 TRF Tandem_Repeat 318514 318671 149 + . . scaffold712 TRF Tandem_Repeat 323079 323284 223 + . . scaffold712 TRF Tandem_Repeat 323079 323335 277 + . . scaffold712 TRF Tandem_Repeat 323092 323310 249 + . . scaffold712 TRF Tandem_Repeat 323311 323450 115 + . . scaffold712 TRF Tandem_Repeat 323551 323637 113 + . . scaffold712 GLEAN promoter 327069 328068 0.992758 + . ID=CGI_10016483; scaffold712 GLEAN mRNA 328069 333402 0.992758 + . ID=CGI_10016483; scaffold712 TRF Tandem_Repeat 329599 329825 192 + . . scaffold712 GLEAN mRNA 333578 333790 1 - . ID=CGI_10016484; scaffold712 GLEAN promoter 333791 334790 1 - . ID=CGI_10016484; scaffold712 GLEAN promoter 335086 336085 0.995237 + . ID=CGI_10016485; scaffold712 GLEAN mRNA 336086 347992 0.995237 + . ID=CGI_10016485; scaffold712 TRF Tandem_Repeat 338837 338904 136 + . . scaffold712 WUBlastX LINE_R2-Hero 343073 343858 130 + . . scaffold712 WUBlastX LINE_R2-Hero 343404 344411 499 + . . scaffold712 WUBlastX LINE_R2-Hero 344996 345343 245 + . . scaffold712 WUBlastX LINE_R2-Hero 345336 345470 61 + . . scaffold712 WUBlastX LINE_R2-Hero 345475 346533 289 + . . scaffold712 TRF Tandem_Repeat 345841 345874 59 + . . scaffold712 TRF Tandem_Repeat 358119 358164 92 + . . scaffold712 GLEAN promoter 360323 361322 0.593391 + . ID=CGI_10016486; scaffold712 GLEAN mRNA 361323 365450 0.593391 + . ID=CGI_10016486; scaffold712 WUBlastX LINE_RTE-BovB 368115 368381 98 + . . scaffold712 WUBlastX LINE_CR1 368121 368495 81 + . . scaffold712 GLEAN mRNA 374889 391245 0.993906 - . ID=CGI_10016487; scaffold712 TRF Tandem_Repeat 375082 375125 61 + . . scaffold712 GLEAN promoter 391246 392245 0.993906 - . ID=CGI_10016487; scaffold712 WUBlastX LINE_RTE-X 396802 397551 111 - . . scaffold712 WUBlastX LINE_RTE-X 397623 398342 372 - . . scaffold712 WUBlastX LINE_RTE-X 398296 399117 367 - . . scaffold712 TRF Tandem_Repeat 399164 399250 113 + . . scaffold712 TRF Tandem_Repeat 399358 399498 122 + . . scaffold712 TRF Tandem_Repeat 399524 399671 154 + . . scaffold712 TRF Tandem_Repeat 399745 399833 88 + . . scaffold712 WUBlastX LINE_RTE-X 399888 400043 53 - . . scaffold712 WUBlastX LINE_RTE-X 400762 400854 27 + . . scaffold712 GLEAN promoter 405071 406070 1 + . ID=CGI_10016488; scaffold712 GLEAN mRNA 406071 407873 1 + . ID=CGI_10016488; scaffold712 GLEAN mRNA 407397 462275 0.613636 - . ID=CGI_10016489; scaffold712 TRF Tandem_Repeat 411879 411934 76 + . . scaffold712 TRF Tandem_Repeat 426553 426604 52 + . . scaffold712 TRF Tandem_Repeat 429117 429146 60 + . . scaffold712 WUBlastX LINE_CR1 436650 437264 218 + . . scaffold712 WUBlastX LINE_CR1 436818 437261 251 + . . scaffold712 WUBlastX LINE_CR1-L2 436833 437345 81 + . . scaffold712 WUBlastX DNA_TcMar-Tc1 440552 441142 134 - . . scaffold712 WUBlastX DNA_TcMar-Tc1 440729 441148 160 - . . scaffold712 WUBlastX DNA_TcMar-Tc1 440753 441223 62 - . . scaffold712 WUBlastX DNA_TcMar-Tc1 444688 444933 83 - . . scaffold712 GLEAN promoter 462276 463275 0.613636 - . ID=CGI_10016489; scaffold713 WUBlastX DNA_Harbinger 71 220 62 - . . scaffold713 WUBlastX LTR_Gypsy 2726 3385 32 + . . scaffold713 WUBlastX LTR_Gypsy 3224 3385 78 + . . scaffold713 GLEAN promoter 7122 8121 0.996603 + . ID=CGI_10017731; scaffold713 GLEAN mRNA 8122 13339 0.996603 + . ID=CGI_10017731; scaffold713 GLEAN promoter 12599 13598 1 + . ID=CGI_10017732; scaffold713 GLEAN mRNA 13599 17482 1 + . ID=CGI_10017732; scaffold713 GLEAN mRNA 14744 25279 0.376665 - . ID=CGI_10017733; scaffold713 GLEAN promoter 25280 26279 0.376665 - . ID=CGI_10017733; scaffold713 WUBlastX LINE_RTE-BovB 41267 41644 35 - . . scaffold713 WUBlastX LINE_RTE-BovB 41327 41500 36 - . . scaffold713 WUBlastX LINE_RTE-BovB 41366 41713 69 - . . scaffold713 WUBlastX LINE_RTE-BovB 41369 41653 206 - . . scaffold713 WUBlastX LINE_RTE-BovB 41685 41813 68 - . . scaffold713 WUBlastX LINE_RTE-BovB 41691 41852 47 - . . scaffold713 WUBlastX LINE_RTE-BovB 42040 42324 65 - . . scaffold713 WUBlastX LINE_RTE-BovB 42307 42402 36 - . . scaffold713 GLEAN mRNA 47304 49889 0.648556 - . ID=CGI_10017734; scaffold713 GLEAN promoter 49890 50889 0.648556 - . ID=CGI_10017734; scaffold713 TRF Tandem_Repeat 53464 53516 97 + . . scaffold713 TRF Tandem_Repeat 54485 54530 92 + . . scaffold713 GLEAN promoter 58071 59070 0.999675 + . ID=CGI_10017735; scaffold713 GLEAN mRNA 59071 65066 0.999675 + . ID=CGI_10017735; scaffold713 GLEAN mRNA 67000 68631 1 - . ID=CGI_10017736; scaffold713 GLEAN promoter 67667 68666 0.544852 + . ID=CGI_10017737; scaffold713 GLEAN promoter 68632 69631 1 - . ID=CGI_10017736; scaffold713 GLEAN mRNA 68667 87434 0.544852 + . ID=CGI_10017737; scaffold713 TRF Tandem_Repeat 70058 70088 53 + . . scaffold713 TRF Tandem_Repeat 70281 71203 1232 + . . scaffold713 TRF Tandem_Repeat 73112 74521 1604 + . . scaffold713 TRF Tandem_Repeat 73445 74587 1190 + . . scaffold713 GLEAN mRNA 81858 86174 1 - . ID=CGI_10017738; scaffold713 GLEAN promoter 86175 87174 1 - . ID=CGI_10017738; scaffold713 GLEAN promoter 87422 88421 1 + . ID=CGI_10017739; scaffold713 GLEAN mRNA 88422 90437 1 + . ID=CGI_10017739; scaffold713 TRF Tandem_Repeat 95099 95135 51 + . . scaffold713 GLEAN promoter 95625 96624 1 + . ID=CGI_10017740; scaffold713 GLEAN mRNA 96625 103493 1 + . ID=CGI_10017740; scaffold713 TRF Tandem_Repeat 101324 101359 63 + . . scaffold713 GLEAN mRNA 107456 117997 1 - . ID=CGI_10017741; scaffold713 TRF Tandem_Repeat 117541 117585 90 + . . scaffold713 GLEAN promoter 117998 118997 1 - . ID=CGI_10017741; scaffold713 WUBlastX LINE_RTE-X 119443 119847 136 + . . scaffold713 WUBlastX LINE_RTE-X 119875 120120 45 + . . scaffold713 WUBlastX LINE_RTE-X 119884 120075 70 + . . scaffold713 GLEAN promoter 120407 121406 0.805534 + . ID=CGI_10017742; scaffold713 GLEAN mRNA 121407 123842 0.805534 + . ID=CGI_10017742; scaffold713 TRF Tandem_Repeat 127401 127438 58 + . . scaffold713 WUBlastX LTR_Gypsy 158130 158303 82 - . . scaffold713 TRF Tandem_Repeat 159844 159878 70 + . . scaffold713 TRF Tandem_Repeat 164360 164407 87 + . . scaffold713 TRF Tandem_Repeat 172735 172801 62 + . . scaffold713 TRF Tandem_Repeat 173528 173579 104 + . . scaffold713 TRF Tandem_Repeat 175275 175341 64 + . . scaffold713 GLEAN mRNA 206933 209950 0.965908 - . ID=CGI_10017743; scaffold713 GLEAN promoter 209951 210950 0.965908 - . ID=CGI_10017743; scaffold713 GLEAN promoter 213671 214670 0.872541 + . ID=CGI_10017744; scaffold713 GLEAN mRNA 214671 217040 0.872541 + . ID=CGI_10017744; scaffold713 GLEAN promoter 219464 220463 0.487223 + . ID=CGI_10017745; scaffold713 GLEAN mRNA 220464 221618 0.487223 + . ID=CGI_10017745; scaffold713 GLEAN mRNA 221983 245346 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 227027 227230 311 + . . scaffold713 TRF Tandem_Repeat 229377 229804 372 + . . scaffold713 TRF Tandem_Repeat 229396 229590 54 + . . scaffold713 TRF Tandem_Repeat 229519 230011 225 + . . scaffold713 TRF Tandem_Repeat 229609 230011 214 + . . scaffold713 TRF Tandem_Repeat 229798 230011 322 + . . scaffold713 TRF Tandem_Repeat 244897 244965 111 + . . scaffold713 GLEAN promoter 245347 246346 0.493889 - . ID=CGI_10017746; scaffold713 TRF Tandem_Repeat 245715 245801 104 + . . scaffold713 TRF Tandem_Repeat 247386 247624 191 + . . scaffold713 TRF Tandem_Repeat 253340 253365 52 + . . scaffold713 WUBlastX LINE_RTE-X 255612 256190 86 - . . scaffold713 GLEAN mRNA 258553 267151 0.993907 - . ID=CGI_10017747; scaffold713 GLEAN promoter 267152 268151 0.993907 - . ID=CGI_10017747; scaffold713 GLEAN promoter 267195 268194 0.219264 + . ID=CGI_10017748; scaffold713 GLEAN mRNA 268195 271194 0.219264 + . ID=CGI_10017748; scaffold713 TRF Tandem_Repeat 273738 273779 84 + . . scaffold713 TRF Tandem_Repeat 273779 273825 94 + . . scaffold713 TRF Tandem_Repeat 275901 275946 92 + . . scaffold713 GLEAN mRNA 278549 279583 0.412716 - . ID=CGI_10017749; scaffold713 GLEAN promoter 279584 280583 0.412716 - . ID=CGI_10017749; scaffold713 GLEAN mRNA 280118 290080 0.999676 - . ID=CGI_10017750; scaffold713 TRF Tandem_Repeat 281050 281337 451 + . . scaffold713 GLEAN promoter 290081 291080 0.999676 - . ID=CGI_10017750; scaffold713 TRF Tandem_Repeat 298454 298578 196 + . . scaffold713 TRF Tandem_Repeat 303056 303097 75 + . . scaffold713 TRF Tandem_Repeat 312950 313304 476 + . . scaffold713 TRF Tandem_Repeat 314312 314353 84 + . . scaffold713 TRF Tandem_Repeat 314595 314637 86 + . . scaffold713 WUBlastX LINE_RTE-X 316565 317497 430 - . . scaffold713 WUBlastX LINE_RTE-X 317476 317757 110 - . . scaffold713 WUBlastX LINE_RTE-X 317482 317652 132 - . . scaffold713 TRF Tandem_Repeat 323828 323857 60 + . . scaffold713 GLEAN promoter 325784 326783 0.983192 + . ID=CGI_10017751; scaffold713 GLEAN mRNA 326784 328336 0.983192 + . ID=CGI_10017751; scaffold713 GLEAN mRNA 329962 331841 1 - . ID=CGI_10017752; scaffold713 GLEAN promoter 331842 332841 1 - . ID=CGI_10017752; scaffold713 GLEAN promoter 337450 338449 1 + . ID=CGI_10017753; scaffold713 TRF Tandem_Repeat 337487 337535 98 + . . scaffold713 GLEAN mRNA 338450 341603 1 + . ID=CGI_10017753; scaffold713 GLEAN mRNA 341990 345034 0.958677 - . ID=CGI_10017754; scaffold713 GLEAN promoter 345035 346034 0.958677 - . ID=CGI_10017754; scaffold713 GLEAN mRNA 347139 347728 0.309826 - . ID=CGI_10017755; scaffold713 GLEAN promoter 347729 348728 0.309826 - . ID=CGI_10017755; scaffold713 GLEAN mRNA 347793 349528 0.309326 - . ID=CGI_10017756; scaffold713 GLEAN promoter 349529 350528 0.309326 - . ID=CGI_10017756; scaffold713 WUBlastX DNA_TcMar-Marin 351986 352117 23 + . . scaffold713 WUBlastX DNA_TcMar-Marin 352225 352596 136 + . . scaffold713 TRF Tandem_Repeat 353418 353452 52 + . . scaffold713 GLEAN promoter 354226 355225 1 + . ID=CGI_10017757; scaffold713 GLEAN mRNA 355226 356933 1 + . ID=CGI_10017757; scaffold713 TRF Tandem_Repeat 359160 359189 60 + . . scaffold713 TRF Tandem_Repeat 365366 365395 60 + . . scaffold713 GLEAN mRNA 366454 376627 0.559722 - . ID=CGI_10017758; scaffold713 GLEAN promoter 376628 377627 0.559722 - . ID=CGI_10017758; scaffold713 GLEAN mRNA 378101 379345 1 - . ID=CGI_10017759; scaffold713 GLEAN promoter 379346 380345 1 - . ID=CGI_10017759; scaffold713 TRF Tandem_Repeat 382181 382215 70 + . . scaffold713 TRF Tandem_Repeat 382214 382245 64 + . . scaffold713 TRF Tandem_Repeat 383549 383685 247 + . . scaffold713 GLEAN mRNA 384658 415279 0.728047 - . ID=CGI_10017760; scaffold713 TRF Tandem_Repeat 396852 396920 57 + . . scaffold713 TRF Tandem_Repeat 398734 398798 130 + . . scaffold713 TRF Tandem_Repeat 399353 399471 102 + . . scaffold713 TRF Tandem_Repeat 399406 399471 69 + . . scaffold713 TRF Tandem_Repeat 399490 399534 72 + . . scaffold713 WUBlastX LINE_CR1-L2 405655 405918 35 - . . scaffold713 GLEAN promoter 415280 416279 0.728047 - . ID=CGI_10017760; scaffold713 GLEAN mRNA 416371 435487 0.999676 - . ID=CGI_10017761; scaffold713 GLEAN promoter 435488 436487 0.999676 - . ID=CGI_10017761; scaffold713 TRF Tandem_Repeat 447533 447580 96 + . . scaffold713 GLEAN mRNA 450558 455939 1 - . ID=CGI_10017762; scaffold713 WUBlastX LINE_RTE-X 452460 452756 72 + . . scaffold713 WUBlastX LINE_RTE-X 452463 452639 86 + . . scaffold713 GLEAN promoter 455940 456939 1 - . ID=CGI_10017762; scaffold713 GLEAN promoter 456188 457187 0.999675 + . ID=CGI_10017763; scaffold713 GLEAN mRNA 457188 468416 0.999675 + . ID=CGI_10017763; scaffold713 TRF Tandem_Repeat 466699 466945 381 + . . scaffold713 TRF Tandem_Repeat 471184 472053 1181 + . . scaffold713 TRF Tandem_Repeat 473002 473148 73 + . . scaffold713 TRF Tandem_Repeat 473064 473193 93 + . . scaffold713 GLEAN mRNA 475809 478208 0.995918 - . ID=CGI_10017764; scaffold713 GLEAN promoter 478209 479208 0.995918 - . ID=CGI_10017764; scaffold713 TRF Tandem_Repeat 478807 478870 121 + . . scaffold713 GLEAN promoter 482482 483481 0.999944 + . ID=CGI_10017765; scaffold713 TRF Tandem_Repeat 482595 482653 118 + . . scaffold713 GLEAN mRNA 483482 495037 0.999944 + . ID=CGI_10017765; scaffold713 TRF Tandem_Repeat 493715 493813 108 + . . scaffold713 TRF Tandem_Repeat 493715 493816 78 + . . scaffold713 TRF Tandem_Repeat 493715 493816 78 + . . scaffold713 TRF Tandem_Repeat 493715 493816 105 + . . scaffold713 TRF Tandem_Repeat 493749 493813 85 + . . scaffold713 TRF Tandem_Repeat 497873 498497 792 + . . scaffold713 TRF Tandem_Repeat 497873 498497 708 + . . scaffold713 TRF Tandem_Repeat 497883 498502 818 + . . scaffold713 TRF Tandem_Repeat 498854 498895 57 + . . scaffold713 GLEAN mRNA 506783 518170 0.791417 - . ID=CGI_10017766; scaffold713 TRF Tandem_Repeat 509916 510065 162 + . . scaffold713 TRF Tandem_Repeat 510909 511091 117 + . . scaffold713 GLEAN promoter 518171 519170 0.791417 - . ID=CGI_10017766; scaffold714 TRF Tandem_Repeat 6318 6367 100 + . . scaffold714 TRF Tandem_Repeat 8127 8178 88 + . . scaffold714 GLEAN promoter 12767 13766 0.999996 + . ID=CGI_10016637; scaffold714 GLEAN mRNA 13767 15542 0.999996 + . ID=CGI_10016637; scaffold714 TRF Tandem_Repeat 17233 18465 1645 + . . scaffold714 WUBlastX LINE_Jockey 20793 20834 20 + . . scaffold714 WUBlastX LINE_RTE-X 20889 21008 64 + . . scaffold714 WUBlastX LINE_RTE-X 20987 21388 223 + . . scaffold714 WUBlastX LINE_RTE-X 21391 21726 100 + . . scaffold714 WUBlastX LINE_RTE-X 21728 22243 133 + . . scaffold714 WUBlastX LINE_RTE-X 21827 22243 167 + . . scaffold714 GLEAN mRNA 24304 24735 0.999984 - . ID=CGI_10016638; scaffold714 GLEAN promoter 24736 25735 0.999984 - . ID=CGI_10016638; scaffold714 TRF Tandem_Repeat 26844 27538 1074 + . . scaffold714 TRF Tandem_Repeat 30253 30338 145 + . . scaffold714 TRF Tandem_Repeat 32479 32531 83 + . . scaffold714 TRF Tandem_Repeat 37972 38011 80 + . . scaffold714 TRF Tandem_Repeat 40505 40546 75 + . . scaffold714 WUBlastX LINE_L1-Tx1 43352 43852 43 - . . scaffold714 WUBlastX LINE_L1 43439 43975 82 - . . scaffold714 WUBlastX LINE_L1 43448 43852 128 - . . scaffold714 WUBlastX LINE_L1-Tx1 43890 44522 50 - . . scaffold714 WUBlastX LINE_L1-Tx1 45460 45798 48 - . . scaffold714 GLEAN promoter 49507 50506 0.898295 + . ID=CGI_10016639; scaffold714 GLEAN mRNA 50507 63753 0.898295 + . ID=CGI_10016639; scaffold714 TRF Tandem_Repeat 57964 58005 84 + . . scaffold714 TRF Tandem_Repeat 62500 62532 57 + . . scaffold714 TRF Tandem_Repeat 67042 67252 179 + . . scaffold714 TRF Tandem_Repeat 67042 67252 206 + . . scaffold714 GLEAN promoter 71326 72325 0.727136 + . ID=CGI_10016640; scaffold714 TRF Tandem_Repeat 72192 72243 104 + . . scaffold714 GLEAN mRNA 72326 94511 0.727136 + . ID=CGI_10016640; scaffold714 TRF Tandem_Repeat 77165 77216 63 + . . scaffold714 TRF Tandem_Repeat 77239 77282 88 + . . scaffold714 TRF Tandem_Repeat 79272 79311 80 + . . scaffold714 TRF Tandem_Repeat 83727 83764 76 + . . scaffold714 WUBlastX DNA_TcMar-Marin 87952 88245 26 - . . scaffold714 WUBlastX DNA_TcMar-Tc1 88003 88404 187 - . . scaffold714 WUBlastX DNA_TcMar-Tc1 88340 88702 103 - . . scaffold714 WUBlastX DNA_TcMar-Tc1 88385 88765 78 - . . scaffold714 WUBlastX DNA_TcMar-Tc1 88707 88901 44 - . . scaffold714 TRF Tandem_Repeat 91750 91775 52 + . . scaffold714 TRF Tandem_Repeat 98658 98719 106 + . . scaffold714 WUBlastX LTR_DIRS 99255 99620 36 + . . scaffold714 WUBlastX LTR_DIRS 99315 99620 57 + . . scaffold714 WUBlastX LTR_DIRS 99586 99813 22 + . . scaffold714 WUBlastX LTR_DIRS 99691 99858 52 + . . scaffold714 TRF Tandem_Repeat 111976 112039 119 + . . scaffold714 WUBlastX LTR_DIRS 114101 114316 54 + . . scaffold714 WUBlastX LTR_DIRS 114155 114388 24 + . . scaffold714 WUBlastX LTR_DIRS 114167 114304 73 + . . scaffold714 TRF Tandem_Repeat 118228 118277 57 + . . scaffold714 GLEAN promoter 120262 121261 0.454071 + . ID=CGI_10016641; scaffold714 WUBlastX LTR_DIRS 120751 120852 23 + . . scaffold714 WUBlastX LTR_DIRS 120843 121241 135 + . . scaffold714 GLEAN mRNA 121262 133597 0.454071 + . ID=CGI_10016641; scaffold714 TRF Tandem_Repeat 139111 139157 94 + . . scaffold714 TRF Tandem_Repeat 140309 141107 1233 + . . scaffold714 WUBlastX LTR_Gypsy 167105 168508 1245 - . . scaffold714 WUBlastX LTR_Gypsy 168368 168535 20 - . . scaffold714 WUBlastX LTR_Gypsy 168556 169332 617 - . . scaffold714 WUBlastX LTR_Gypsy 169280 169369 22 - . . scaffold714 WUBlastX DNA_TcMar-Marin 175188 175412 40 + . . scaffold714 WUBlastX DNA_TcMar-Marin 175640 175894 46 + . . scaffold714 WUBlastX LINE_L1 181006 181254 76 - . . scaffold714 WUBlastX LINE_L1-Tx1 181275 182384 291 - . . scaffold714 WUBlastX LINE_I 182861 183421 23 - . . scaffold714 WUBlastX LINE_CR1 183161 183946 140 - . . scaffold714 WUBlastX LINE_L1-Tx1 183173 183814 168 - . . scaffold714 TRF Tandem_Repeat 188426 188451 52 + . . scaffold714 TRF Tandem_Repeat 188449 188499 102 + . . scaffold714 TRF Tandem_Repeat 195164 195962 1073 + . . scaffold714 GLEAN promoter 196127 197126 0.848561 + . ID=CGI_10016642; scaffold714 GLEAN mRNA 197127 201891 0.848561 + . ID=CGI_10016642; scaffold714 TRF Tandem_Repeat 207047 207085 78 + . . scaffold714 TRF Tandem_Repeat 214033 214078 83 + . . scaffold714 TRF Tandem_Repeat 215777 215827 93 + . . scaffold714 WUBlastX DNA_Kolobok-IS4 217366 217557 85 - . . scaffold714 WUBlastX DNA_IS4EU 217574 217789 151 - . . scaffold714 WUBlastX DNA_Kolobok-IS4 217776 217925 106 - . . scaffold714 WUBlastX DNA_IS4EU 217800 217949 30 - . . scaffold714 TRF Tandem_Repeat 218171 218235 121 + . . scaffold714 TRF Tandem_Repeat 219686 219729 88 + . . scaffold714 TRF Tandem_Repeat 220111 220160 75 + . . scaffold714 TRF Tandem_Repeat 229010 229073 58 + . . scaffold714 TRF Tandem_Repeat 239263 239294 64 + . . scaffold714 WUBlastX LINE_RTE-X 244520 244822 56 + . . scaffold714 WUBlastX LINE_RTE-X 244649 244846 88 + . . scaffold714 WUBlastX LINE_RTE-X 244869 245300 85 + . . scaffold714 GLEAN promoter 246457 247456 0.677949 + . ID=CGI_10016643; scaffold714 GLEAN mRNA 247457 275977 0.677949 + . ID=CGI_10016643; scaffold714 WUBlastX LINE_RTE-X 248414 248509 37 + . . scaffold714 TRF Tandem_Repeat 256234 256929 899 + . . scaffold714 TRF Tandem_Repeat 262579 262692 115 + . . scaffold714 WUBlastX LINE_L1-Tx1 299036 299704 93 - . . scaffold714 WUBlastX LINE_L1 299381 299764 69 - . . scaffold714 WUBlastX LINE_L1 300219 300302 20 - . . scaffold714 TRF Tandem_Repeat 301677 301751 125 + . . scaffold714 TRF Tandem_Repeat 302069 303528 2229 + . . scaffold714 TRF Tandem_Repeat 302069 303528 2291 + . . scaffold714 TRF Tandem_Repeat 303559 303598 62 + . . scaffold714 TRF Tandem_Repeat 306078 306119 50 + . . scaffold714 TRF Tandem_Repeat 322788 322843 112 + . . scaffold714 WUBlastX LINE_L1-Tx1 325865 326116 79 - . . scaffold714 WUBlastX LINE_L1-Tx1 325922 326167 63 - . . scaffold714 GLEAN mRNA 326430 327002 0.999372 - . ID=CGI_10016644; scaffold714 GLEAN promoter 327003 328002 0.999372 - . ID=CGI_10016644; scaffold714 GLEAN promoter 333536 334535 0.776794 + . ID=CGI_10016645; scaffold714 WUBlastX LTR_Gypsy 334249 334470 65 - . . scaffold714 GLEAN mRNA 334536 334700 0.776794 + . ID=CGI_10016645; scaffold714 GLEAN mRNA 341764 346999 1 - . ID=CGI_10016646; scaffold714 GLEAN promoter 347000 347999 1 - . ID=CGI_10016646; scaffold714 TRF Tandem_Repeat 362528 362678 74 + . . scaffold714 TRF Tandem_Repeat 362592 362756 57 + . . scaffold714 TRF Tandem_Repeat 363641 364388 896 + . . scaffold714 WUBlastX LINE_RTE-BovB 372057 372167 81 + . . scaffold714 WUBlastX LINE_RTE-BovB 372806 373099 69 + . . scaffold714 WUBlastX LINE_RTE-BovB 372875 373096 175 + . . scaffold714 WUBlastX LINE_RTE-BovB 372881 373144 86 + . . scaffold714 GLEAN mRNA 380562 399951 0.999675 - . ID=CGI_10016647; scaffold714 TRF Tandem_Repeat 388969 389046 61 + . . scaffold714 WUBlastX DNA_TcMar-Tc1 391465 391803 37 + . . scaffold714 WUBlastX DNA_TcMar-Tc1 391465 391905 23 + . . scaffold714 WUBlastX DNA_TcMar-Marin 392063 392317 35 + . . scaffold714 WUBlastX DNA_TcMar-Tc1 392153 392302 54 + . . scaffold714 TRF Tandem_Repeat 395407 396280 1131 + . . scaffold714 TRF Tandem_Repeat 395416 396125 1026 + . . scaffold714 TRF Tandem_Repeat 396124 396280 206 + . . scaffold714 WUBlastX DNA_TcMar-Tc1 398937 399152 51 + . . scaffold714 WUBlastX DNA_TcMar-Tc1 399006 399200 60 + . . scaffold714 GLEAN promoter 399952 400951 0.999675 - . ID=CGI_10016647; scaffold714 TRF Tandem_Repeat 414972 415014 54 + . . scaffold714 GLEAN promoter 417718 418717 0.999676 + . ID=CGI_10016648; scaffold714 GLEAN mRNA 418718 441384 0.999676 + . ID=CGI_10016648; scaffold714 TRF Tandem_Repeat 430603 430701 108 + . . scaffold714 TRF Tandem_Repeat 432241 432335 84 + . . scaffold714 TRF Tandem_Repeat 433662 433806 239 + . . scaffold714 TRF Tandem_Repeat 436824 437551 180 + . . scaffold714 WUBlastX LINE_RTE-BovB 452313 452447 20 + . . scaffold714 WUBlastX LINE_RTE-BovB 452509 452904 57 + . . scaffold714 WUBlastX LINE_RTE-BovB 452644 452904 83 + . . scaffold714 WUBlastX LINE_RTE-BovB 452677 452889 142 + . . scaffold714 WUBlastX LINE_RTE-BovB 452895 453230 35 + . . scaffold714 WUBlastX LINE_RTE-BovB 453086 453745 200 + . . scaffold714 WUBlastX DNA_hAT-Tip100 456204 456758 169 + . . scaffold714 WUBlastX DNA_hAT-Tip100 456721 457737 93 + . . scaffold714 WUBlastX DNA_hAT-Tip100 457528 457797 103 + . . scaffold714 GLEAN mRNA 463910 464572 0.575459 - . ID=CGI_10016649; scaffold714 GLEAN promoter 464573 465572 0.575459 - . ID=CGI_10016649; scaffold714 TRF Tandem_Repeat 471307 471401 158 + . . scaffold714 WUBlastX LINE_RTE-X 471799 471900 42 - . . scaffold714 WUBlastX LINE_RTE-X 471954 472259 23 - . . scaffold715 GLEAN promoter 2354 3353 0.49851 + . ID=CGI_10006595; scaffold715 WUBlastX LTR_DIRS 2570 2701 43 - . . scaffold715 GLEAN mRNA 3354 14353 0.49851 + . ID=CGI_10006595; scaffold715 TRF Tandem_Repeat 8054 8528 812 + . . scaffold715 TRF Tandem_Repeat 11685 12605 713 + . . scaffold715 WUBlastX LTR_Gypsy 17726 17980 21 + . . scaffold715 WUBlastX LTR_Gypsy 17816 18031 32 + . . scaffold715 WUBlastX LTR_Gypsy 17852 18550 178 + . . scaffold715 WUBlastX LTR_Gypsy 18610 19602 462 + . . scaffold715 TRF Tandem_Repeat 25602 26253 896 + . . scaffold715 TRF Tandem_Repeat 35551 36225 982 + . . scaffold715 TRF Tandem_Repeat 44271 44305 70 + . . scaffold715 TRF Tandem_Repeat 56328 56378 66 + . . scaffold715 TRF Tandem_Repeat 56328 56375 51 + . . scaffold715 TRF Tandem_Repeat 56329 56371 68 + . . scaffold715 TRF Tandem_Repeat 56382 57072 854 + . . scaffold715 WUBlastX DNA_En-Spm 64248 64601 75 + . . scaffold715 WUBlastX LTR_Gypsy 64588 64719 44 - . . scaffold715 WUBlastX LTR_Gypsy 64624 64734 73 - . . scaffold715 WUBlastX LTR_Gypsy 64624 64809 35 - . . scaffold715 WUBlastX LTR_Gypsy 64779 65024 167 - . . scaffold715 WUBlastX LTR_Gypsy-Cigr 64940 65296 176 - . . scaffold715 WUBlastX LTR_Gypsy 65036 65383 155 - . . scaffold715 WUBlastX LTR_Gypsy 65036 65296 192 - . . scaffold715 WUBlastX LTR_Gypsy 65036 65575 133 - . . scaffold715 GLEAN mRNA 68157 68429 0.999994 - . ID=CGI_10006597; scaffold715 GLEAN promoter 68430 69429 0.999994 - . ID=CGI_10006597; scaffold715 GLEAN mRNA 68687 83729 0.503753 - . ID=CGI_10006598; scaffold715 TRF Tandem_Repeat 78767 80389 1436 + . . scaffold715 GLEAN promoter 83730 84729 0.503753 - . ID=CGI_10006598; scaffold715 GLEAN promoter 105339 106338 0.977054 + . ID=CGI_10006599; scaffold715 GLEAN mRNA 106339 111159 0.977054 + . ID=CGI_10006599; scaffold715 GLEAN promoter 133402 134401 0.672245 + . ID=CGI_10006600; scaffold715 GLEAN mRNA 134402 156124 0.672245 + . ID=CGI_10006600; scaffold715 TRF Tandem_Repeat 136337 136372 72 + . . scaffold715 TRF Tandem_Repeat 137576 138537 1408 + . . scaffold715 TRF Tandem_Repeat 141301 142250 1119 + . . scaffold716 WUBlastX LINE_RTE-X 3 536 266 - . . scaffold716 TRF Tandem_Repeat 22253 23043 1137 + . . scaffold716 WUBlastX DNA_IS4EU 54996 55136 26 + . . scaffold716 WUBlastX DNA_Kolobok-IS4 55046 55285 78 + . . scaffold716 WUBlastX DNA_IS4EU 55151 55345 130 + . . scaffold716 TRF Tandem_Repeat 55401 56526 1738 + . . scaffold716 TRF Tandem_Repeat 56557 56592 54 + . . scaffold716 WUBlastX DNA_IS4EU 57380 57484 73 - . . scaffold716 WUBlastX DNA_IS4EU 57483 58043 349 - . . scaffold716 WUBlastX DNA_Kolobok-IS4 58096 58224 23 - . . scaffold716 TRF Tandem_Repeat 62566 62608 77 + . . scaffold716 GLEAN mRNA 62841 64344 0.546164 - . ID=CGI_10014441; scaffold716 WUBlastX DNA_Kolobok-IS4 63823 64248 56 - . . scaffold716 GLEAN promoter 64345 65344 0.546164 - . ID=CGI_10014441; scaffold716 GLEAN promoter 93522 94521 1 + . ID=CGI_10014442; scaffold716 GLEAN mRNA 94522 95472 1 + . ID=CGI_10014442; scaffold716 GLEAN mRNA 98265 108702 0.996451 - . ID=CGI_10014443; scaffold716 TRF Tandem_Repeat 103404 103604 402 + . . scaffold716 GLEAN promoter 108703 109702 0.996451 - . ID=CGI_10014443; scaffold716 GLEAN mRNA 108861 128830 0.700484 - . ID=CGI_10014444; scaffold716 GLEAN promoter 128831 129830 0.700484 - . ID=CGI_10014444; scaffold716 WUBlastX LINE_RTE-X 130120 130548 21 - . . scaffold716 WUBlastX LINE_RTE-X 130264 130653 44 - . . scaffold716 WUBlastX LINE_RTE-X 130264 130398 56 - . . scaffold716 TRF Tandem_Repeat 141563 141616 74 + . . scaffold716 TRF Tandem_Repeat 142044 142767 1026 + . . scaffold716 GLEAN promoter 152650 153649 0.999295 + . ID=CGI_10014445; scaffold716 GLEAN mRNA 153650 169032 0.999295 + . ID=CGI_10014445; scaffold716 TRF Tandem_Repeat 160753 160784 64 + . . scaffold716 TRF Tandem_Repeat 167471 168196 551 + . . scaffold716 TRF Tandem_Repeat 167471 167607 175 + . . scaffold716 TRF Tandem_Repeat 167644 168196 460 + . . scaffold716 GLEAN mRNA 172411 206049 0.731898 - . ID=CGI_10014446; scaffold716 TRF Tandem_Repeat 174757 175139 597 + . . scaffold716 TRF Tandem_Repeat 177839 178006 142 + . . scaffold716 TRF Tandem_Repeat 185596 187272 2506 + . . scaffold716 TRF Tandem_Repeat 185596 187272 3142 + . . scaffold716 TRF Tandem_Repeat 185596 187276 2227 + . . scaffold716 GLEAN promoter 202880 203879 0.734544 + . ID=CGI_10014447; scaffold716 GLEAN mRNA 203880 213038 0.734544 + . ID=CGI_10014447; scaffold716 GLEAN promoter 206050 207049 0.731898 - . ID=CGI_10014446; scaffold716 TRF Tandem_Repeat 207820 207877 82 + . . scaffold716 TRF Tandem_Repeat 212893 212918 52 + . . scaffold716 TRF Tandem_Repeat 217737 217783 94 + . . scaffold716 WUBlastX LINE_CR1-L2 218144 218737 56 + . . scaffold716 WUBlastX LINE_RTE-X 218315 218713 73 + . . scaffold716 WUBlastX LINE_CR1 218910 218978 21 + . . scaffold716 GLEAN mRNA 222223 230213 0.993907 - . ID=CGI_10014448; scaffold716 TRF Tandem_Repeat 222696 222741 92 + . . scaffold716 TRF Tandem_Repeat 227628 227678 102 + . . scaffold716 GLEAN promoter 230214 231213 0.993907 - . ID=CGI_10014448; scaffold716 TRF Tandem_Repeat 231266 231338 107 + . . scaffold716 WUBlastX LINE_RTE-X 233457 233555 20 + . . scaffold716 WUBlastX LINE_RTE-X 233623 233886 21 + . . scaffold716 WUBlastX LINE_RTE-X 233626 233841 44 + . . scaffold716 TRF Tandem_Repeat 240987 241128 221 + . . scaffold716 TRF Tandem_Repeat 247745 247783 78 + . . scaffold716 TRF Tandem_Repeat 269559 269757 182 + . . scaffold716 TRF Tandem_Repeat 269559 269751 170 + . . scaffold716 TRF Tandem_Repeat 269561 269757 178 + . . scaffold716 TRF Tandem_Repeat 270380 270622 326 + . . scaffold716 TRF Tandem_Repeat 270389 270622 278 + . . scaffold716 TRF Tandem_Repeat 273532 273574 86 + . . scaffold716 TRF Tandem_Repeat 279749 280624 1175 + . . scaffold716 TRF Tandem_Repeat 287870 287907 76 + . . scaffold716 GLEAN promoter 289306 290305 0.733495 + . ID=CGI_10014449; scaffold716 GLEAN promoter 290184 291183 1 + . ID=CGI_10014450; scaffold716 GLEAN mRNA 290306 290512 0.733495 + . ID=CGI_10014449; scaffold716 GLEAN mRNA 291184 296541 1 + . ID=CGI_10014450; scaffold716 GLEAN mRNA 298800 302205 1 - . ID=CGI_10014451; scaffold716 GLEAN promoter 302206 303205 1 - . ID=CGI_10014451; scaffold716 WUBlastX LINE_CR1-L2 305100 305528 64 + . . scaffold716 WUBlastX LINE_L2 305268 305717 115 + . . scaffold716 WUBlastX LINE_CR1-L2 305503 306036 38 + . . scaffold716 TRF Tandem_Repeat 311076 311143 100 + . . scaffold716 TRF Tandem_Repeat 313566 313655 128 + . . scaffold716 TRF Tandem_Repeat 314194 314230 65 + . . scaffold716 TRF Tandem_Repeat 316434 316477 88 + . . scaffold716 GLEAN promoter 316907 317906 0.842692 + . ID=CGI_10014452; scaffold716 GLEAN mRNA 317907 344001 0.842692 + . ID=CGI_10014452; scaffold716 WUBlastX LTR_Ngaro 329454 330194 198 + . . scaffold716 WUBlastX LTR_Ngaro 329724 330341 75 + . . scaffold716 WUBlastX LTR_Ngaro 330445 332019 1068 + . . scaffold716 WUBlastX LTR_Ngaro 331929 332879 260 + . . scaffold716 WUBlastX LTR_Gypsy 345081 345158 22 + . . scaffold716 WUBlastX LTR_Gypsy 345121 345411 89 + . . scaffold716 WUBlastX LTR_Gypsy 346601 346756 20 + . . scaffold716 WUBlastX LTR_Gypsy 346939 347187 168 + . . scaffold716 WUBlastX LTR_Gypsy 347002 347220 72 + . . scaffold716 WUBlastX LTR_Gypsy 347190 347348 52 + . . scaffold716 WUBlastX LTR_Gypsy 347348 347407 22 + . . scaffold716 WUBlastX DNA_Merlin 347835 348236 78 + . . scaffold716 WUBlastX DNA_Merlin 347961 348302 45 + . . scaffold716 TRF Tandem_Repeat 358060 358891 1196 + . . scaffold716 WUBlastX LTR_Gypsy 374338 374394 20 - . . scaffold716 WUBlastX LTR_Gypsy 374440 375993 971 - . . scaffold716 WUBlastX LTR_Gypsy 375992 376492 402 - . . scaffold716 WUBlastX LTR_Gypsy 376347 378323 1101 - . . scaffold716 TRF Tandem_Repeat 390542 390580 51 + . . scaffold718 TRF Tandem_Repeat 5925 5960 72 + . . scaffold718 TRF Tandem_Repeat 7978 8049 144 + . . scaffold718 TRF Tandem_Repeat 9609 9659 102 + . . scaffold718 TRF Tandem_Repeat 13950 13984 70 + . . scaffold718 WUBlastX LINE_CR1-L2 15993 16340 23 + . . scaffold718 WUBlastX LINE_CR1-L2 16050 16349 36 + . . scaffold718 WUBlastX LINE_L2 16143 16373 60 + . . scaffold718 WUBlastX LINE_CR1-L2 16336 16722 139 + . . scaffold718 WUBlastX LINE_L2 16402 16797 43 + . . scaffold718 WUBlastX LINE_CR1-L2 17552 18175 112 + . . scaffold718 WUBlastX LINE_L2 17747 18178 154 + . . scaffold718 WUBlastX LINE_CR1-L2 18205 18648 93 + . . scaffold718 WUBlastX LINE_L2 18665 18961 60 + . . scaffold718 WUBlastX LINE_L2 18995 19120 57 + . . scaffold718 WUBlastX LINE_CR1-L2 19158 19256 27 + . . scaffold718 GLEAN promoter 42419 43418 1 + . ID=CGI_10008415; scaffold718 GLEAN mRNA 43419 46887 1 + . ID=CGI_10008415; scaffold718 TRF Tandem_Repeat 57653 57693 82 + . . scaffold718 GLEAN promoter 65979 66978 0.995871 + . ID=CGI_10008416; scaffold718 GLEAN mRNA 66979 73107 0.995871 + . ID=CGI_10008416; scaffold718 GLEAN mRNA 74904 75809 0.997357 - . ID=CGI_10008417; scaffold718 GLEAN promoter 75810 76809 0.997357 - . ID=CGI_10008417; scaffold718 GLEAN mRNA 82924 91629 1 - . ID=CGI_10008418; scaffold718 TRF Tandem_Repeat 88371 88412 68 + . . scaffold718 TRF Tandem_Repeat 89185 89245 108 + . . scaffold718 TRF Tandem_Repeat 90391 90432 84 + . . scaffold718 GLEAN promoter 91630 92629 1 - . ID=CGI_10008418; scaffold718 GLEAN mRNA 101456 105360 0.824363 - . ID=CGI_10008419; scaffold718 GLEAN promoter 105361 106360 0.824363 - . ID=CGI_10008419; scaffold718 TRF Tandem_Repeat 106314 106347 52 + . . scaffold718 GLEAN promoter 110566 111565 0.99901 + . ID=CGI_10008420; scaffold718 GLEAN mRNA 111566 115302 0.99901 + . ID=CGI_10008420; scaffold718 GLEAN mRNA 117501 129592 0.999871 - . ID=CGI_10008421; scaffold718 TRF Tandem_Repeat 129052 129088 67 + . . scaffold718 GLEAN promoter 129593 130592 0.999871 - . ID=CGI_10008421; scaffold718 TRF Tandem_Repeat 130886 130979 125 + . . scaffold718 TRF Tandem_Repeat 131609 131706 70 + . . scaffold718 GLEAN mRNA 135864 161350 0.322607 - . ID=CGI_10008422; scaffold718 TRF Tandem_Repeat 150778 150818 82 + . . scaffold718 GLEAN promoter 161351 162350 0.322607 - . ID=CGI_10008422; scaffold718 TRF Tandem_Repeat 161858 161922 60 + . . scaffold718 WUBlastX LINE_Penelope 171231 171380 75 - . . scaffold718 WUBlastX DNA_TcMar-Marin 200063 200299 80 + . . scaffold718 WUBlastX DNA_TcMar-Marin 200072 200254 112 + . . scaffold718 WUBlastX DNA_TcMar-Fot1 204725 205198 147 + . . scaffold718 WUBlastX DNA_TcMar-Fot1 205176 205427 53 + . . scaffold718 WUBlastX DNA_TcMar-Fot1 205245 205709 69 + . . scaffold718 WUBlastX DNA_TcMar-Fot1 205248 205601 101 + . . scaffold719 TRF Tandem_Repeat 1 396 478 + . . scaffold719 TRF Tandem_Repeat 27 422 344 + . . scaffold719 GLEAN mRNA 701 3685 0.735407 - . ID=CGI_10015995; scaffold719 GLEAN promoter 3686 4685 0.735407 - . ID=CGI_10015995; scaffold719 GLEAN promoter 5912 6911 0.408992 + . ID=CGI_10015996; scaffold719 GLEAN mRNA 6912 10245 0.408992 + . ID=CGI_10015996; scaffold719 TRF Tandem_Repeat 8603 8771 140 + . . scaffold719 TRF Tandem_Repeat 8783 8875 96 + . . scaffold719 GLEAN promoter 9677 10676 0.991197 + . ID=CGI_10015997; scaffold719 GLEAN mRNA 10677 13274 0.991197 + . ID=CGI_10015997; scaffold719 TRF Tandem_Repeat 17356 18440 1339 + . . scaffold719 TRF Tandem_Repeat 19713 19755 86 + . . scaffold719 WUBlastX DNA_Crypton 24253 24597 28 - . . scaffold719 GLEAN promoter 43131 44130 0.999998 + . ID=CGI_10015998; scaffold719 GLEAN mRNA 44131 45519 0.999998 + . ID=CGI_10015998; scaffold719 GLEAN promoter 46515 47514 0.99957 + . ID=CGI_10015999; scaffold719 GLEAN mRNA 47515 49227 0.99957 + . ID=CGI_10015999; scaffold719 GLEAN promoter 53698 54697 0.900416 + . ID=CGI_10016000; scaffold719 TRF Tandem_Repeat 54003 54051 98 + . . scaffold719 GLEAN mRNA 54698 64255 0.900416 + . ID=CGI_10016000; scaffold719 WUBlastX DNA_TcMar-Marin 65576 65782 80 + . . scaffold719 TRF Tandem_Repeat 69500 69538 69 + . . scaffold719 GLEAN promoter 74249 75248 0.874471 + . ID=CGI_10016001; scaffold719 GLEAN mRNA 75249 81641 0.874471 + . ID=CGI_10016001; scaffold719 TRF Tandem_Repeat 79006 79070 76 + . . scaffold719 TRF Tandem_Repeat 79011 79069 64 + . . scaffold719 TRF Tandem_Repeat 79016 79070 56 + . . scaffold719 TRF Tandem_Repeat 119082 119171 126 + . . scaffold719 TRF Tandem_Repeat 121708 121757 73 + . . scaffold719 WUBlastX LTR_Gypsy 123310 123420 43 - . . scaffold719 WUBlastX LTR_Gypsy 123420 123608 31 - . . scaffold719 WUBlastX LTR_Gypsy 123914 124006 28 - . . scaffold719 TRF Tandem_Repeat 126394 126448 87 + . . scaffold719 TRF Tandem_Repeat 128256 128294 60 + . . scaffold719 WUBlastX LTR_Gypsy 128358 128681 71 - . . scaffold719 WUBlastX LTR_Gypsy 128681 128815 45 - . . scaffold719 TRF Tandem_Repeat 136626 136650 50 + . . scaffold719 WUBlastX LTR_Gypsy 142799 143221 47 - . . scaffold719 WUBlastX LTR_Gypsy 143026 143922 104 - . . scaffold719 WUBlastX LTR_Gypsy 143161 144357 909 - . . scaffold719 WUBlastX LTR_Gypsy 144318 144374 44 - . . scaffold719 WUBlastX LTR_Gypsy 144372 145937 825 - . . scaffold719 TRF Tandem_Repeat 146822 146925 183 + . . scaffold719 WUBlastX DNA_hAT-hATw 149346 149636 117 - . . scaffold719 WUBlastX DNA_hAT-hATw 149630 150832 123 - . . scaffold719 WUBlastX DNA_hAT-hATw 149985 150461 208 - . . scaffold719 WUBlastX DNA_hAT-hATw 150057 150461 253 - . . scaffold719 WUBlastX DNA_hAT-hATw 150446 150832 259 - . . scaffold719 WUBlastX DNA_hAT-hATw 150831 151088 121 - . . scaffold719 WUBlastX DNA_hAT-hATw 151057 152136 388 - . . scaffold719 GLEAN mRNA 161242 177672 0.53602 - . ID=CGI_10016002; scaffold719 WUBlastX LINE_L1-Tx1 169331 169657 23 + . . scaffold719 TRF Tandem_Repeat 170061 170107 55 + . . scaffold719 TRF Tandem_Repeat 170665 172234 1415 + . . scaffold719 GLEAN promoter 177673 178672 0.53602 - . ID=CGI_10016002; scaffold719 GLEAN promoter 178475 179474 0.981323 + . ID=CGI_10016004; scaffold719 WUBlastX DNA_Maverick 178825 179424 316 + . . scaffold719 GLEAN mRNA 179475 181578 0.981323 + . ID=CGI_10016004; scaffold719 WUBlastX DNA_Maverick 182573 182929 251 + . . scaffold719 WUBlastX DNA_Maverick 182851 183243 252 + . . scaffold719 WUBlastX DNA_Maverick 182908 183237 258 + . . scaffold719 WUBlastX DNA_Maverick 183243 183572 195 + . . scaffold719 WUBlastX LTR_Gypsy 183572 183697 30 + . . scaffold719 WUBlastX DNA_Maverick 183575 183628 39 + . . scaffold719 WUBlastX LINE_L2 184450 184608 20 + . . scaffold719 WUBlastX LINE_L1-Tx1 185268 186401 244 + . . scaffold719 WUBlastX LINE_L1-Tx1 185283 186209 383 + . . scaffold719 TRF Tandem_Repeat 192938 192965 56 + . . scaffold719 WUBlastX LTR_Pao 201153 201335 29 + . . scaffold719 WUBlastX LTR_Pao 201224 201454 40 + . . scaffold719 WUBlastX LTR_Pao 201314 202078 203 + . . scaffold719 WUBlastX LTR_Pao 202096 202206 87 + . . scaffold719 WUBlastX LTR_Pao 202099 202266 29 + . . scaffold719 WUBlastX LTR_Pao 202715 202774 21 + . . scaffold719 WUBlastX LTR_Ngaro 219973 220554 142 + . . scaffold719 WUBlastX LTR_Ngaro 220159 220611 207 + . . scaffold719 WUBlastX LTR_Ngaro 220548 221471 460 + . . scaffold719 WUBlastX LTR_Ngaro 221473 221871 29 + . . scaffold719 WUBlastX LTR_Ngaro 221527 221853 82 + . . scaffold719 WUBlastX DNA_TcMar-Tc1 222426 223145 409 - . . scaffold719 WUBlastX DNA_TcMar-Tc1 222426 223364 296 - . . scaffold719 GLEAN promoter 225015 226014 0.539419 + . ID=CGI_10016005; scaffold719 GLEAN mRNA 226015 226410 0.539419 + . ID=CGI_10016005; scaffold719 TRF Tandem_Repeat 260531 260629 132 + . . scaffold719 GLEAN promoter 260894 261893 0.985424 + . ID=CGI_10016006; scaffold719 GLEAN mRNA 261894 263922 0.985424 + . ID=CGI_10016006; scaffold719 TRF Tandem_Repeat 294090 294115 52 + . . scaffold719 TRF Tandem_Repeat 294113 294148 72 + . . scaffold719 TRF Tandem_Repeat 294146 294175 60 + . . scaffold719 TRF Tandem_Repeat 294173 294229 114 + . . scaffold719 TRF Tandem_Repeat 299611 299637 54 + . . scaffold719 TRF Tandem_Repeat 304772 304860 169 + . . scaffold719 WUBlastX LINE_RTE-X 308224 308412 75 - . . scaffold719 TRF Tandem_Repeat 308642 308687 92 + . . scaffold719 TRF Tandem_Repeat 308685 308729 90 + . . scaffold719 TRF Tandem_Repeat 308731 308760 60 + . . scaffold719 TRF Tandem_Repeat 310385 310489 167 + . . scaffold719 TRF Tandem_Repeat 311296 311484 208 + . . scaffold719 TRF Tandem_Repeat 311298 311487 209 + . . scaffold719 TRF Tandem_Repeat 311298 311487 209 + . . scaffold719 WUBlastX LINE_RTE-X 311509 312573 279 + . . scaffold719 WUBlastX LINE_RTE-X 311509 312366 325 + . . scaffold719 WUBlastX LINE_RTE-X 312894 313061 51 + . . scaffold719 WUBlastX LINE_RTE-X 312972 313184 42 + . . scaffold719 WUBlastX LTR_Gypsy 313813 317760 2635 - . . scaffold719 WUBlastX LINE_L1-Tx1 320839 321234 72 - . . scaffold719 WUBlastX LINE_L1-Tx1 320887 321555 21 - . . scaffold719 WUBlastX LINE_L1 320890 321225 73 - . . scaffold719 TRF Tandem_Repeat 322681 322732 97 + . . scaffold719 WUBlastX LINE_CR1-L2 323979 324221 46 - . . scaffold719 WUBlastX LINE_CR1-L2 324033 324224 55 - . . scaffold719 WUBlastX LINE_L2 324257 324658 51 - . . scaffold719 WUBlastX LINE_CR1-L2 324639 324731 24 - . . scaffold719 TRF Tandem_Repeat 326110 326152 86 + . . scaffold719 TRF Tandem_Repeat 332114 332249 163 + . . scaffold719 WUBlastX DNA_MuDR 349866 350474 65 - . . scaffold719 WUBlastX DNA_MuDR 349866 350117 68 - . . scaffold719 GLEAN mRNA 350223 350417 0.481188 - . ID=CGI_10016007; scaffold719 GLEAN promoter 350418 351417 0.481188 - . ID=CGI_10016007; scaffold719 GLEAN promoter 351016 352015 0.96406 + . ID=CGI_10016008; scaffold719 GLEAN mRNA 352016 396683 0.96406 + . ID=CGI_10016008; scaffold719 WUBlastX LTR_Pao 352022 352354 70 + . . scaffold719 WUBlastX LTR_Pao 352022 352177 115 + . . scaffold719 WUBlastX LTR_Pao 352263 352724 128 + . . scaffold719 WUBlastX LTR_Pao 352431 352763 136 + . . scaffold719 WUBlastX LTR_Pao 352443 352862 130 + . . scaffold719 WUBlastX LTR_Pao 352488 352724 152 + . . scaffold719 WUBlastX LTR_Pao 352494 352769 146 + . . scaffold719 TRF Tandem_Repeat 375666 375948 530 + . . scaffold719 TRF Tandem_Repeat 377827 377875 98 + . . scaffold719 TRF Tandem_Repeat 386561 386613 106 + . . scaffold719 TRF Tandem_Repeat 392243 392578 367 + . . scaffold719 GLEAN promoter 396601 397600 0.336497 + . ID=CGI_10016009; scaffold719 GLEAN mRNA 397601 413158 0.336497 + . ID=CGI_10016009; scaffold719 GLEAN promoter 439593 440592 0.99883 + . ID=CGI_10016010; scaffold719 GLEAN mRNA 440593 445446 0.99883 + . ID=CGI_10016010; scaffold719 TRF Tandem_Repeat 450504 450533 60 + . . scaffold72 TRF Tandem_Repeat 233 379 64 + . . scaffold72 TRF Tandem_Repeat 295 424 84 + . . scaffold72 GLEAN mRNA 7133 11161 0.989847 - . ID=CGI_10017832; scaffold72 GLEAN promoter 8367 9366 0.999999 + . ID=CGI_10017833; scaffold72 GLEAN mRNA 9367 18332 0.999999 + . ID=CGI_10017833; scaffold72 GLEAN promoter 11162 12161 0.989847 - . ID=CGI_10017832; scaffold72 TRF Tandem_Repeat 14443 14490 60 + . . scaffold72 TRF Tandem_Repeat 19628 19719 132 + . . scaffold72 TRF Tandem_Repeat 19796 19915 98 + . . scaffold72 TRF Tandem_Repeat 19844 19934 101 + . . scaffold72 TRF Tandem_Repeat 20120 20213 136 + . . scaffold72 GLEAN mRNA 24406 25599 0.740139 - . ID=CGI_10017834; scaffold72 GLEAN promoter 25600 26599 0.740139 - . ID=CGI_10017834; scaffold72 TRF Tandem_Repeat 26149 26211 119 + . . scaffold72 GLEAN mRNA 30988 34550 0.999696 - . ID=CGI_10017835; scaffold72 TRF Tandem_Repeat 34158 34327 134 + . . scaffold72 GLEAN promoter 34551 35550 0.999696 - . ID=CGI_10017835; scaffold72 WUBlastX LINE_L2 34940 35041 25 + . . scaffold72 TRF Tandem_Repeat 35411 35529 107 + . . scaffold72 WUBlastX LINE_L1 35567 35803 51 + . . scaffold72 WUBlastX LINE_L1-Tx1 35621 35821 143 + . . scaffold72 WUBlastX LINE_L1-Tx1 35751 37130 705 + . . scaffold72 WUBlastX LINE_L1-Tx1 37121 37720 44 + . . scaffold72 TRF Tandem_Repeat 79950 80015 132 + . . scaffold72 TRF Tandem_Repeat 83661 83762 118 + . . scaffold72 TRF Tandem_Repeat 83741 83940 220 + . . scaffold72 TRF Tandem_Repeat 83995 84081 113 + . . scaffold72 TRF Tandem_Repeat 85574 85695 56 + . . scaffold72 WUBlastX DNA_IS 86152 86754 969 + . . scaffold72 WUBlastX LINE_RTE-X 86867 87142 38 - . . scaffold72 WUBlastX LINE_RTE-X 87294 87425 50 - . . scaffold72 WUBlastX LINE_RTE-X 87642 87812 82 - . . scaffold72 WUBlastX LINE_RTE-X 87666 87956 61 - . . scaffold72 WUBlastX LINE_RTE-X 112410 112472 20 - . . scaffold72 WUBlastX LINE_RTE-X 112525 112683 38 - . . scaffold72 WUBlastX LINE_RTE-X 112704 113060 22 - . . scaffold72 WUBlastX LINE_RTE-X 112790 112882 34 - . . scaffold72 WUBlastX LINE_RTE-X 112851 113084 70 - . . scaffold72 WUBlastX LINE_RTE-X 113282 113443 28 - . . scaffold72 WUBlastX LTR_Gypsy 114204 114335 22 + . . scaffold72 WUBlastX LTR_Gypsy 114219 114329 49 + . . scaffold72 WUBlastX LTR_Gypsy 114350 114571 81 + . . scaffold72 GLEAN promoter 119265 120264 0.558395 + . ID=CGI_10017836; scaffold72 GLEAN mRNA 120265 134629 0.558395 + . ID=CGI_10017836; scaffold72 TRF Tandem_Repeat 130165 130909 1271 + . . scaffold72 TRF Tandem_Repeat 135603 135693 141 + . . scaffold72 TRF Tandem_Repeat 140893 141396 427 + . . scaffold72 TRF Tandem_Repeat 142600 142646 94 + . . scaffold72 GLEAN mRNA 143038 143352 0.618195 - . ID=CGI_10017837; scaffold72 GLEAN promoter 143323 144322 0.999415 + . ID=CGI_10017838; scaffold72 GLEAN promoter 143353 144352 0.618195 - . ID=CGI_10017837; scaffold72 GLEAN mRNA 144323 162117 0.999415 + . ID=CGI_10017838; scaffold72 TRF Tandem_Repeat 149718 149780 117 + . . scaffold72 WUBlastX LINE_RTE-X 154246 154458 26 + . . scaffold72 WUBlastX LINE_RTE-BovB 157967 158533 276 - . . scaffold72 WUBlastX LINE_RTE-BovB 158535 159197 588 - . . scaffold72 WUBlastX LINE_RTE-BovB 158535 159362 345 - . . scaffold72 WUBlastX LINE_Jockey 166772 167113 29 + . . scaffold72 WUBlastX LINE_RTE-X 166904 167125 77 + . . scaffold72 WUBlastX LINE_RTE-X 166928 167422 65 + . . scaffold72 WUBlastX LINE_RTE-X 167214 167333 67 + . . scaffold72 WUBlastX LINE_RTE-X 167478 167885 97 + . . scaffold72 WUBlastX LINE_RTE-X 167499 168038 31 + . . scaffold72 WUBlastX LINE_RTE-X 167502 167954 60 + . . scaffold72 GLEAN promoter 169093 170092 0.862925 + . ID=CGI_10017839; scaffold72 GLEAN mRNA 170093 190215 0.862925 + . ID=CGI_10017839; scaffold72 GLEAN mRNA 193573 202346 0.937847 - . ID=CGI_10017840; scaffold72 TRF Tandem_Repeat 195422 195543 190 + . . scaffold72 TRF Tandem_Repeat 195425 195579 103 + . . scaffold72 TRF Tandem_Repeat 195747 195940 262 + . . scaffold72 TRF Tandem_Repeat 195767 196266 589 + . . scaffold72 TRF Tandem_Repeat 195841 195922 64 + . . scaffold72 TRF Tandem_Repeat 197919 198387 508 + . . scaffold72 GLEAN promoter 202347 203346 0.937847 - . ID=CGI_10017840; scaffold72 WUBlastX LINE_L2 202638 203669 667 + . . scaffold72 WUBlastX LINE_L2 203720 203941 48 + . . scaffold72 GLEAN mRNA 207105 213716 0.998726 - . ID=CGI_10017841; scaffold72 WUBlastX DNA_TcMar-Marin 209326 209430 21 + . . scaffold72 WUBlastX DNA_TcMar-Marin 209622 210272 112 + . . scaffold72 WUBlastX DNA_TcMar-Marin 209739 210272 121 + . . scaffold72 GLEAN promoter 213717 214716 0.998726 - . ID=CGI_10017841; scaffold72 WUBlastX LINE_L2 217291 219564 1239 - . . scaffold72 WUBlastX LINE_CR1 219588 219692 24 - . . scaffold72 WUBlastX LINE_RTE-BovB 219648 219710 24 - . . scaffold72 TRF Tandem_Repeat 224093 224146 108 + . . scaffold72 GLEAN promoter 227067 228066 0.999999 + . ID=CGI_10017842; scaffold72 GLEAN mRNA 228067 230925 0.999999 + . ID=CGI_10017842; scaffold72 TRF Tandem_Repeat 232091 232903 404 + . . scaffold72 TRF Tandem_Repeat 238769 238831 126 + . . scaffold72 TRF Tandem_Repeat 240219 240485 453 + . . scaffold72 WUBlastX LINE_Penelope 240510 241811 624 - . . scaffold72 TRF Tandem_Repeat 242413 242480 109 + . . scaffold72 TRF Tandem_Repeat 242422 242481 75 + . . scaffold72 TRF Tandem_Repeat 246702 246873 308 + . . scaffold72 WUBlastX LINE_Penelope 246898 247413 261 - . . scaffold72 WUBlastX LINE_Penelope 247416 248201 311 - . . scaffold72 GLEAN mRNA 259413 261946 0.558432 - . ID=CGI_10017844; scaffold72 GLEAN promoter 261947 262946 0.558432 - . ID=CGI_10017844; scaffold72 TRF Tandem_Repeat 263365 263406 84 + . . scaffold72 TRF Tandem_Repeat 264053 264115 117 + . . scaffold72 TRF Tandem_Repeat 271083 271211 123 + . . scaffold72 TRF Tandem_Repeat 271210 271420 183 + . . scaffold72 TRF Tandem_Repeat 271505 271591 104 + . . scaffold72 TRF Tandem_Repeat 277613 277694 98 + . . scaffold72 TRF Tandem_Repeat 283361 283406 83 + . . scaffold72 TRF Tandem_Repeat 284264 284294 62 + . . scaffold72 TRF Tandem_Repeat 284737 284810 139 + . . scaffold72 TRF Tandem_Repeat 285778 285828 59 + . . scaffold72 TRF Tandem_Repeat 287470 287521 77 + . . scaffold72 WUBlastX LTR_DIRS 298679 298921 180 - . . scaffold72 WUBlastX LTR_Ngaro 298966 299241 38 - . . scaffold72 WUBlastX LTR_DIRS 299011 299505 194 - . . scaffold72 TRF Tandem_Repeat 299822 300121 255 + . . scaffold72 TRF Tandem_Repeat 299824 300123 304 + . . scaffold72 WUBlastX LTR_DIRS 300192 300473 25 - . . scaffold72 TRF Tandem_Repeat 309639 309796 98 + . . scaffold72 TRF Tandem_Repeat 309659 309796 156 + . . scaffold72 WUBlastX LINE_L1-Tx1 311807 312268 123 - . . scaffold72 TRF Tandem_Repeat 312317 312395 95 + . . scaffold72 TRF Tandem_Repeat 312317 312399 157 + . . scaffold72 TRF Tandem_Repeat 312407 313210 1179 + . . scaffold72 WUBlastX LINE_L1-Tx1 313568 314380 253 - . . scaffold72 TRF Tandem_Repeat 330857 332799 2061 + . . scaffold72 TRF Tandem_Repeat 330861 332799 1842 + . . scaffold72 WUBlastX DNA_Kolobok 338234 338479 94 + . . scaffold72 WUBlastX DNA_Kolobok 338980 339240 84 - . . scaffold72 WUBlastX DNA_Kolobok 339362 339490 35 - . . scaffold72 WUBlastX DNA_Kolobok 340048 340095 20 - . . scaffold72 WUBlastX DNA_Kolobok 340319 340393 20 - . . scaffold72 WUBlastX DNA_Kolobok 340536 340841 134 - . . scaffold72 WUBlastX DNA_Kolobok 340976 341164 73 - . . scaffold72 WUBlastX DNA_Kolobok 341009 341248 58 - . . scaffold72 WUBlastX DNA_TcMar-Tc1 346368 346508 29 + . . scaffold72 WUBlastX DNA_TcMar-Tc1 346496 346996 56 + . . scaffold72 WUBlastX DNA_TcMar-Tc1 346607 346984 89 + . . scaffold72 GLEAN mRNA 348645 351093 0.999999 - . ID=CGI_10017845; scaffold72 TRF Tandem_Repeat 349772 349875 199 + . . scaffold72 GLEAN promoter 351094 352093 0.999999 - . ID=CGI_10017845; scaffold72 WUBlastX LTR_Gypsy 359186 359560 69 - . . scaffold72 WUBlastX LTR_Gypsy 359336 359557 72 - . . scaffold72 TRF Tandem_Repeat 379235 379310 53 + . . scaffold72 TRF Tandem_Repeat 381373 381428 58 + . . scaffold72 TRF Tandem_Repeat 386964 387118 118 + . . scaffold72 TRF Tandem_Repeat 386965 387121 151 + . . scaffold72 TRF Tandem_Repeat 388837 388890 99 + . . scaffold72 TRF Tandem_Repeat 390341 390384 88 + . . scaffold72 TRF Tandem_Repeat 407936 408245 460 + . . scaffold72 WUBlastX LTR_Gypsy 409956 410075 27 + . . scaffold72 WUBlastX LTR_Gypsy 410069 410146 34 + . . scaffold72 WUBlastX LTR_Gypsy 410081 410635 192 + . . scaffold72 WUBlastX LTR_Gypsy 410576 410716 27 + . . scaffold72 WUBlastX LTR_Gypsy 410755 411666 432 + . . scaffold72 WUBlastX LTR_Gypsy 411288 413309 1227 + . . scaffold72 WUBlastX LTR_Gypsy 413350 413754 118 + . . scaffold72 TRF Tandem_Repeat 418290 418337 96 + . . scaffold72 TRF Tandem_Repeat 419200 419243 79 + . . scaffold72 TRF Tandem_Repeat 425398 426193 1229 + . . scaffold72 TRF Tandem_Repeat 431801 431838 76 + . . scaffold72 WUBlastX DNA_Sola 432026 432736 278 + . . scaffold72 WUBlastX DNA_Sola 432897 433109 115 + . . scaffold72 WUBlastX DNA_Sola 433223 433420 27 + . . scaffold72 WUBlastX DNA_Sola 433950 434513 306 + . . scaffold72 WUBlastX DNA_Sola 434632 434790 61 + . . scaffold72 WUBlastX DNA_Sola 435482 436039 230 + . . scaffold72 GLEAN mRNA 444361 448796 0.999675 - . ID=CGI_10017847; scaffold72 GLEAN promoter 448797 449796 0.999675 - . ID=CGI_10017847; scaffold72 GLEAN promoter 460855 461854 0.990886 + . ID=CGI_10017848; scaffold72 GLEAN mRNA 461855 471601 0.990886 + . ID=CGI_10017848; scaffold72 WUBlastX LINE_RTE-X 470575 470739 39 - . . scaffold72 TRF Tandem_Repeat 472363 472395 66 + . . scaffold72 GLEAN promoter 472511 473510 0.997687 + . ID=CGI_10017849; scaffold72 GLEAN mRNA 473511 477830 0.997687 + . ID=CGI_10017849; scaffold72 TRF Tandem_Repeat 482428 482487 102 + . . scaffold72 TRF Tandem_Repeat 513223 513276 74 + . . scaffold72 WUBlastX DNA_En-Spm 518382 520682 1125 + . . scaffold720 WUBlastX LINE_Penelope 15 350 126 + . . scaffold721 TRF Tandem_Repeat 37 98 72 + . . scaffold721 TRF Tandem_Repeat 11628 11654 54 + . . scaffold721 TRF Tandem_Repeat 15875 15988 115 + . . scaffold721 WUBlastX LINE_L2 16648 17172 46 + . . scaffold721 WUBlastX LINE_L2 16810 17178 128 + . . scaffold721 WUBlastX LINE_L2 17148 17597 61 + . . scaffold721 WUBlastX LINE_L2 17465 17920 55 + . . scaffold721 WUBlastX LINE_L2 17926 18708 297 + . . scaffold721 WUBlastX LINE_L2 18088 19383 691 + . . scaffold721 WUBlastX DNA_Harbinger 26684 26941 65 + . . scaffold721 WUBlastX DNA_Harbinger 27223 27342 22 + . . scaffold721 WUBlastX DNA_Harbinger 27297 27422 53 + . . scaffold721 WUBlastX DNA_Harbinger 27318 27443 58 + . . scaffold721 WUBlastX DNA_Harbinger 27336 27425 71 + . . scaffold721 WUBlastX DNA_Harbinger 37183 37278 25 - . . scaffold721 WUBlastX DNA_Harbinger 38214 38390 50 - . . scaffold721 WUBlastX DNA_Harbinger 38232 38375 74 - . . scaffold721 WUBlastX DNA_Harbinger 38826 38978 57 - . . scaffold721 WUBlastX DNA_Maverick 40781 41245 175 - . . scaffold721 WUBlastX LTR_DIRS 41879 42643 279 + . . scaffold721 WUBlastX LTR_DIRS 41879 43183 156 + . . scaffold721 WUBlastX LTR_DIRS 42935 43336 143 + . . scaffold721 WUBlastX LTR_DIRS 43564 44250 153 + . . scaffold721 WUBlastX LTR_DIRS? 43696 44181 198 + . . scaffold721 WUBlastX LTR_DIRS 44184 44507 36 + . . scaffold721 WUBlastX LINE_L2 45530 47293 1057 - . . scaffold721 WUBlastX LINE_CR1-L2 47338 47877 106 - . . scaffold721 WUBlastX LINE_CR1-L2 47338 47763 165 - . . scaffold721 WUBlastX DNA_Maverick 47960 48070 64 - . . scaffold721 WUBlastX DNA_Maverick 48018 48251 84 - . . scaffold721 WUBlastX DNA_Maverick 48057 48251 97 - . . scaffold721 WUBlastX DNA_Maverick 48069 48404 66 - . . scaffold721 WUBlastX DNA_Maverick 48974 49240 157 - . . scaffold721 WUBlastX DNA_Maverick 48974 49291 145 - . . scaffold721 WUBlastX DNA_Maverick 49240 49566 133 - . . scaffold721 GLEAN mRNA 50857 51345 0.998651 - . ID=CGI_10021994; scaffold721 GLEAN promoter 51346 52345 0.998651 - . ID=CGI_10021994; scaffold721 WUBlastX DNA_MuDR 53049 53210 66 + . . scaffold721 TRF Tandem_Repeat 56320 56360 82 + . . scaffold721 GLEAN promoter 67079 68078 0.992034 + . ID=CGI_10021995; scaffold721 GLEAN mRNA 68079 89248 0.992034 + . ID=CGI_10021995; scaffold721 TRF Tandem_Repeat 79104 79170 134 + . . scaffold721 WUBlastX LINE_L2 82904 83008 30 + . . scaffold721 WUBlastX LINE_L2 82922 83014 42 + . . scaffold721 WUBlastX LINE_L2 83025 83123 42 + . . scaffold721 WUBlastX LINE_L2 83071 83721 289 + . . scaffold721 WUBlastX LINE_L2 83194 83847 324 + . . scaffold721 WUBlastX LINE_L2 83197 83709 328 + . . scaffold721 WUBlastX LINE_L2 83717 84010 152 + . . scaffold721 WUBlastX LINE_L2 84015 84410 191 + . . scaffold721 WUBlastX LINE_L2 84424 84570 80 + . . scaffold721 WUBlastX LINE_L2 84424 84603 55 + . . scaffold721 TRF Tandem_Repeat 90234 90264 53 + . . scaffold721 TRF Tandem_Repeat 90469 91550 1553 + . . scaffold721 WUBlastX RC_Helitron 92435 92803 165 - . . scaffold721 WUBlastX DNA_Helitron 92760 93074 104 - . . scaffold721 WUBlastX RC_Helitron 92974 93780 114 - . . scaffold721 WUBlastX DNA_Helitron 93175 93831 398 - . . scaffold721 GLEAN mRNA 100400 115390 0.998359 - . ID=CGI_10021996; scaffold721 TRF Tandem_Repeat 110257 110292 54 + . . scaffold721 GLEAN promoter 115391 116390 0.998359 - . ID=CGI_10021996; scaffold721 TRF Tandem_Repeat 118767 118817 93 + . . scaffold721 TRF Tandem_Repeat 127145 127175 62 + . . scaffold721 GLEAN promoter 129602 130601 0.999321 + . ID=CGI_10021997; scaffold721 GLEAN mRNA 130602 152896 0.999321 + . ID=CGI_10021997; scaffold721 TRF Tandem_Repeat 139935 139972 76 + . . scaffold721 TRF Tandem_Repeat 145655 145711 59 + . . scaffold721 TRF Tandem_Repeat 157257 157281 50 + . . scaffold721 WUBlastX LINE_RTE-X 157564 158430 277 - . . scaffold721 WUBlastX LINE_RTE-X 158433 158840 183 - . . scaffold721 WUBlastX LINE_RTE-X 158792 159340 259 - . . scaffold721 WUBlastX LINE_RTE-X 158882 159334 294 - . . scaffold721 WUBlastX LINE_CR1 158885 159433 123 - . . scaffold721 WUBlastX LINE_DRE 159333 159581 43 - . . scaffold721 WUBlastX LINE_RTE-X 159502 159957 70 - . . scaffold721 GLEAN mRNA 160447 179017 0.988804 - . ID=CGI_10021998; scaffold721 TRF Tandem_Repeat 173689 174420 1286 + . . scaffold721 TRF Tandem_Repeat 178044 178097 74 + . . scaffold721 GLEAN promoter 179018 180017 0.988804 - . ID=CGI_10021998; scaffold721 TRF Tandem_Repeat 180055 180089 70 + . . scaffold721 WUBlastX LINE_RTE-BovB 184631 184996 126 + . . scaffold721 WUBlastX LINE_RTE-BovB 184742 185023 241 + . . scaffold721 WUBlastX LINE_RTE-BovB 185018 185440 236 + . . scaffold721 WUBlastX LINE_RTE-BovB 185434 185790 184 + . . scaffold721 WUBlastX LINE_RTE-BovB 187340 187618 213 - . . scaffold721 WUBlastX LINE_RTE-BovB 187614 187793 144 - . . scaffold721 WUBlastX LINE_RTE-BovB 187629 187832 58 - . . scaffold721 WUBlastX DNA_TcMar-Tc1 196044 196397 72 + . . scaffold721 WUBlastX DNA_TcMar-Tc1 196322 196744 75 + . . scaffold721 WUBlastX DNA_TcMar-Tc1 196391 196744 193 + . . scaffold721 TRF Tandem_Repeat 199559 199625 80 + . . scaffold721 WUBlastX LINE_CR1-L2 200271 200714 93 - . . scaffold721 WUBlastX LINE_L2 200618 201220 147 - . . scaffold721 WUBlastX LINE_CR1-L2 200723 201283 301 - . . scaffold721 WUBlastX LINE_L2 200723 201415 141 - . . scaffold721 WUBlastX DNA_TcMar-Tc1 204497 204850 84 + . . scaffold721 WUBlastX DNA_TcMar-Tc1 204829 205362 299 + . . scaffold721 WUBlastX DNA_TcMar-Tc1 205365 205460 54 + . . scaffold721 TRF Tandem_Repeat 234929 235000 144 + . . scaffold721 TRF Tandem_Repeat 261854 261898 90 + . . scaffold721 WUBlastX LTR_Ngaro 285379 285792 41 - . . scaffold721 WUBlastX LTR_Ngaro 285400 285651 51 - . . scaffold721 WUBlastX LTR_Ngaro 286262 286441 27 - . . scaffold721 WUBlastX LTR_Ngaro 286283 286399 28 - . . scaffold721 WUBlastX LTR_Ngaro 286674 286841 76 - . . scaffold721 WUBlastX LINE_L1-Tx1 288194 288334 29 + . . scaffold721 WUBlastX LINE_L1-Tx1 288439 289161 94 + . . scaffold721 TRF Tandem_Repeat 295350 295417 136 + . . scaffold721 TRF Tandem_Repeat 295449 295476 56 + . . scaffold721 TRF Tandem_Repeat 303522 303561 80 + . . scaffold721 TRF Tandem_Repeat 304579 304620 84 + . . scaffold721 TRF Tandem_Repeat 310702 310755 108 + . . scaffold721 TRF Tandem_Repeat 312138 312173 63 + . . scaffold721 GLEAN promoter 313861 314860 0.998653 + . ID=CGI_10021999; scaffold721 GLEAN mRNA 314861 325717 0.998653 + . ID=CGI_10021999; scaffold721 TRF Tandem_Repeat 315120 315186 134 + . . scaffold721 TRF Tandem_Repeat 323264 323304 66 + . . scaffold721 TRF Tandem_Repeat 328740 328808 104 + . . scaffold721 TRF Tandem_Repeat 331348 331384 74 + . . scaffold721 GLEAN mRNA 333586 348181 0.998766 - . ID=CGI_10022000; scaffold721 GLEAN promoter 348182 349181 0.998766 - . ID=CGI_10022000; scaffold721 GLEAN promoter 349044 350043 0.412686 + . ID=CGI_10022001; scaffold721 GLEAN mRNA 350044 360364 0.412686 + . ID=CGI_10022001; scaffold721 WUBlastX LINE_CR1 350170 350463 59 + . . scaffold721 WUBlastX LINE_RTE-X 363465 364052 141 - . . scaffold721 TRF Tandem_Repeat 365577 365630 108 + . . scaffold721 GLEAN promoter 367498 368497 0.64159 + . ID=CGI_10022002; scaffold721 GLEAN mRNA 368498 397673 0.64159 + . ID=CGI_10022002; scaffold721 TRF Tandem_Repeat 376047 376351 371 + . . scaffold721 TRF Tandem_Repeat 378796 379228 625 + . . scaffold721 TRF Tandem_Repeat 386994 387169 83 + . . scaffold721 TRF Tandem_Repeat 395474 395606 121 + . . scaffold721 TRF Tandem_Repeat 400289 400402 81 + . . scaffold721 TRF Tandem_Repeat 400826 400919 116 + . . scaffold721 TRF Tandem_Repeat 400966 401054 137 + . . scaffold721 WUBlastX DNA_Harbinger 403351 403506 101 - . . scaffold721 WUBlastX DNA_Harbinger 403567 404121 299 - . . scaffold721 GLEAN promoter 404492 405491 0.836067 + . ID=CGI_10022003; scaffold721 GLEAN mRNA 405492 410531 0.836067 + . ID=CGI_10022003; scaffold721 GLEAN promoter 412043 413042 0.689742 + . ID=CGI_10022004; scaffold721 GLEAN mRNA 413043 434101 0.689742 + . ID=CGI_10022004; scaffold721 TRF Tandem_Repeat 422438 422667 302 + . . scaffold721 WUBlastX LINE_RTE-BovB 445040 445372 168 + . . scaffold721 WUBlastX LINE_RTE-BovB 445315 447387 351 + . . scaffold721 WUBlastX LINE_RTE-BovB 447387 447893 311 + . . scaffold721 TRF Tandem_Repeat 447943 447971 58 + . . scaffold721 TRF Tandem_Repeat 447971 448007 74 + . . scaffold721 TRF Tandem_Repeat 452772 452803 64 + . . scaffold721 GLEAN mRNA 454217 458515 0.59339 - . ID=CGI_10022005; scaffold721 GLEAN promoter 458516 459515 0.59339 - . ID=CGI_10022005; scaffold721 GLEAN mRNA 462973 473081 0.335585 - . ID=CGI_10022006; scaffold721 GLEAN promoter 473082 474081 0.335585 - . ID=CGI_10022006; scaffold721 TRF Tandem_Repeat 475174 475198 50 + . . scaffold721 TRF Tandem_Repeat 476026 476065 80 + . . scaffold721 WUBlastX LINE_RTE-X 486684 486962 40 - . . scaffold721 WUBlastX LINE_RTE-X 486726 486959 57 - . . scaffold721 WUBlastX LINE_RTE-X 486753 487223 49 - . . scaffold721 WUBlastX LINE_RTE-X 486801 486977 67 - . . scaffold721 GLEAN mRNA 488511 520021 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 488923 489180 262 + . . scaffold721 TRF Tandem_Repeat 488928 489150 246 + . . scaffold721 TRF Tandem_Repeat 488952 489209 115 + . . scaffold721 TRF Tandem_Repeat 494277 494929 965 + . . scaffold721 TRF Tandem_Repeat 494946 494988 59 + . . scaffold721 TRF Tandem_Repeat 496018 496054 74 + . . scaffold721 TRF Tandem_Repeat 501870 502345 740 + . . scaffold721 GLEAN promoter 515967 516966 0.861698 + . ID=CGI_10022008; scaffold721 GLEAN mRNA 516967 526566 0.861698 + . ID=CGI_10022008; scaffold721 GLEAN promoter 520022 521021 0.841398 - . ID=CGI_10022007; scaffold721 TRF Tandem_Repeat 526056 526233 94 + . . scaffold721 GLEAN mRNA 528483 551000 0.432556 - . ID=CGI_10022009; scaffold721 GLEAN promoter 534014 535013 0.999676 + . ID=CGI_10022010; scaffold721 GLEAN mRNA 535014 543130 0.999676 + . ID=CGI_10022010; scaffold721 TRF Tandem_Repeat 535889 535946 116 + . . scaffold721 TRF Tandem_Repeat 537888 537923 72 + . . scaffold721 TRF Tandem_Repeat 540409 540617 391 + . . scaffold721 TRF Tandem_Repeat 540409 540989 545 + . . scaffold721 TRF Tandem_Repeat 540409 540989 545 + . . scaffold721 TRF Tandem_Repeat 540616 540989 649 + . . scaffold721 GLEAN promoter 551001 552000 0.432556 - . ID=CGI_10022009; scaffold721 GLEAN promoter 552637 553636 0.539375 + . ID=CGI_10022011; scaffold721 GLEAN mRNA 553637 555931 0.539375 + . ID=CGI_10022011; scaffold721 GLEAN promoter 555591 556590 0.539201 + . ID=CGI_10022012; scaffold721 GLEAN mRNA 556591 561682 0.539201 + . ID=CGI_10022012; scaffold721 TRF Tandem_Repeat 562542 562617 89 + . . scaffold721 GLEAN mRNA 563903 575057 0.999675 - . ID=CGI_10022013; scaffold721 TRF Tandem_Repeat 571580 571892 599 + . . scaffold721 TRF Tandem_Repeat 571868 572108 178 + . . scaffold721 TRF Tandem_Repeat 571868 572152 135 + . . scaffold721 TRF Tandem_Repeat 572368 572608 178 + . . scaffold721 TRF Tandem_Repeat 572368 572652 135 + . . scaffold721 GLEAN promoter 575058 576057 0.999675 - . ID=CGI_10022013; scaffold721 GLEAN mRNA 582991 607417 0.998859 - . ID=CGI_10022014; scaffold721 WUBlastX LINE_RTE-X 594228 594896 86 - . . scaffold721 WUBlastX LINE_RTE-X 594330 594929 115 - . . scaffold721 TRF Tandem_Repeat 603896 604056 277 + . . scaffold721 GLEAN promoter 607418 608417 0.998859 - . ID=CGI_10022014; scaffold721 TRF Tandem_Repeat 617222 617287 125 + . . scaffold721 TRF Tandem_Repeat 617230 617312 60 + . . scaffold721 GLEAN promoter 620136 621135 1 + . ID=CGI_10022015; scaffold721 GLEAN mRNA 621136 624231 1 + . ID=CGI_10022015; scaffold721 TRF Tandem_Repeat 624033 624072 80 + . . scaffold721 TRF Tandem_Repeat 626553 626586 68 + . . scaffold721 GLEAN mRNA 632924 655582 0.995167 - . ID=CGI_10022016; scaffold721 GLEAN promoter 655583 656582 0.995167 - . ID=CGI_10022016; scaffold721 GLEAN promoter 656917 657916 0.510867 + . ID=CGI_10022017; scaffold721 GLEAN mRNA 657917 660456 0.510867 + . ID=CGI_10022017; scaffold721 TRF Tandem_Repeat 658509 658548 80 + . . scaffold721 TRF Tandem_Repeat 659139 659181 86 + . . scaffold721 GLEAN promoter 660933 661932 0.999999 + . ID=CGI_10022018; scaffold721 GLEAN mRNA 661933 670072 0.999999 + . ID=CGI_10022018; scaffold721 TRF Tandem_Repeat 662501 662531 62 + . . scaffold721 TRF Tandem_Repeat 665833 666046 151 + . . scaffold721 TRF Tandem_Repeat 666072 666257 113 + . . scaffold721 GLEAN mRNA 670259 671898 0.990971 - . ID=CGI_10022019; scaffold721 GLEAN promoter 671899 672898 0.990971 - . ID=CGI_10022019; scaffold721 GLEAN promoter 682016 683015 0.999949 + . ID=CGI_10022020; scaffold721 GLEAN mRNA 683016 695220 0.999949 + . ID=CGI_10022020; scaffold721 GLEAN promoter 694679 695678 0.558395 + . ID=CGI_10022021; scaffold721 TRF Tandem_Repeat 695466 695652 135 + . . scaffold721 TRF Tandem_Repeat 695466 695666 140 + . . scaffold721 TRF Tandem_Repeat 695481 695666 73 + . . scaffold721 TRF Tandem_Repeat 695526 695676 124 + . . scaffold721 GLEAN mRNA 695679 701082 0.558395 + . ID=CGI_10022021; scaffold721 TRF Tandem_Repeat 702976 703064 79 + . . scaffold721 TRF Tandem_Repeat 703145 703239 84 + . . scaffold721 TRF Tandem_Repeat 705062 705117 66 + . . scaffold721 TRF Tandem_Repeat 705069 705115 55 + . . scaffold721 WUBlastX LTR_Ngaro 707242 707982 223 - . . scaffold721 WUBlastX LTR_Ngaro 707986 708951 356 - . . scaffold721 WUBlastX LTR_Ngaro 708966 709076 32 - . . scaffold721 WUBlastX LTR_Ngaro 709966 710082 28 - . . scaffold721 GLEAN promoter 710022 711021 0.879934 + . ID=CGI_10022022; scaffold721 GLEAN mRNA 711022 721153 0.879934 + . ID=CGI_10022022; scaffold722 GLEAN promoter 1 480 0.618241 + . ID=CGI_10012185; scaffold722 GLEAN mRNA 481 684 0.618241 + . ID=CGI_10012185; scaffold722 GLEAN mRNA 681 44793 0.362649 - . ID=CGI_10012186; scaffold722 TRF Tandem_Repeat 10328 10556 280 + . . scaffold722 GLEAN promoter 44442 45441 0.433176 + . ID=CGI_10012187; scaffold722 GLEAN promoter 44794 45793 0.362649 - . ID=CGI_10012186; scaffold722 GLEAN mRNA 45442 50151 0.433176 + . ID=CGI_10012187; scaffold722 GLEAN mRNA 57810 73490 0.999351 - . ID=CGI_10012188; scaffold722 GLEAN promoter 69327 70326 0.711195 + . ID=CGI_10012189; scaffold722 GLEAN mRNA 70327 109619 0.711195 + . ID=CGI_10012189; scaffold722 GLEAN promoter 73491 74490 0.999351 - . ID=CGI_10012188; scaffold722 TRF Tandem_Repeat 75460 75669 259 + . . scaffold722 TRF Tandem_Repeat 75969 76397 309 + . . scaffold722 TRF Tandem_Repeat 76081 76415 424 + . . scaffold722 GLEAN mRNA 81987 85628 1 - . ID=CGI_10012190; scaffold722 GLEAN promoter 85629 86628 1 - . ID=CGI_10012190; scaffold722 GLEAN mRNA 92301 97782 1 - . ID=CGI_10012191; scaffold722 GLEAN promoter 97783 98782 1 - . ID=CGI_10012191; scaffold722 GLEAN mRNA 111256 115976 0.99428 - . ID=CGI_10012192; scaffold722 TRF Tandem_Repeat 114350 114389 80 + . . scaffold722 GLEAN promoter 115977 116976 0.99428 - . ID=CGI_10012192; scaffold722 GLEAN mRNA 116737 125682 1 - . ID=CGI_10012193; scaffold722 TRF Tandem_Repeat 121287 121321 52 + . . scaffold722 GLEAN promoter 125683 126682 1 - . ID=CGI_10012193; scaffold722 GLEAN mRNA 125721 133604 0.672351 - . ID=CGI_10012194; scaffold722 GLEAN promoter 133605 134604 0.672351 - . ID=CGI_10012194; scaffold722 GLEAN mRNA 138444 145620 0.672181 - . ID=CGI_10012195; scaffold722 GLEAN promoter 145621 146620 0.672181 - . ID=CGI_10012195; scaffold722 TRF Tandem_Repeat 159155 159208 72 + . . scaffold722 TRF Tandem_Repeat 164309 164376 118 + . . scaffold722 TRF Tandem_Repeat 168626 168676 102 + . . scaffold722 TRF Tandem_Repeat 168918 168950 66 + . . scaffold722 GLEAN promoter 169317 170316 0.483258 + . ID=CGI_10012196; scaffold722 GLEAN mRNA 170317 172468 0.483258 + . ID=CGI_10012196; scaffold722 GLEAN promoter 174677 175676 0.999977 + . ID=CGI_10012197; scaffold722 GLEAN mRNA 175677 176756 0.999977 + . ID=CGI_10012197; scaffold722 TRF Tandem_Repeat 177185 177661 579 + . . scaffold722 TRF Tandem_Repeat 177643 177857 79 + . . scaffold722 TRF Tandem_Repeat 177660 177867 184 + . . scaffold722 GLEAN mRNA 185337 194880 1 - . ID=CGI_10012198; scaffold722 GLEAN promoter 194881 195880 1 - . ID=CGI_10012198; scaffold722 GLEAN mRNA 200067 201857 1 - . ID=CGI_10012199; scaffold722 GLEAN promoter 200904 201903 0.999977 + . ID=CGI_10012200; scaffold722 GLEAN promoter 201858 202857 1 - . ID=CGI_10012199; scaffold722 GLEAN mRNA 201904 208807 0.999977 + . ID=CGI_10012200; scaffold722 TRF Tandem_Repeat 206696 206862 192 + . . scaffold722 GLEAN mRNA 213107 274814 0.920529 - . ID=CGI_10012201; scaffold722 TRF Tandem_Repeat 220614 220775 98 + . . scaffold722 TRF Tandem_Repeat 230249 230296 96 + . . scaffold722 TRF Tandem_Repeat 236340 237532 1306 + . . scaffold722 WUBlastX DNA_TcMar-Marin 242449 242607 44 - . . scaffold722 WUBlastX DNA_TcMar-Marin 242506 242664 73 - . . scaffold722 WUBlastX DNA_TcMar-Marin 242682 242927 70 - . . scaffold722 TRF Tandem_Repeat 247724 247755 64 + . . scaffold722 TRF Tandem_Repeat 251318 251737 312 + . . scaffold722 TRF Tandem_Repeat 251359 251655 300 + . . scaffold722 TRF Tandem_Repeat 259383 259596 171 + . . scaffold722 TRF Tandem_Repeat 259607 259829 182 + . . scaffold722 TRF Tandem_Repeat 260093 260239 188 + . . scaffold722 TRF Tandem_Repeat 260093 260260 174 + . . scaffold722 TRF Tandem_Repeat 270378 270563 112 + . . scaffold722 GLEAN promoter 274815 275814 0.920529 - . ID=CGI_10012201; scaffold722 GLEAN mRNA 274822 285482 0.934305 - . ID=CGI_10012202; scaffold722 TRF Tandem_Repeat 281619 281680 124 + . . scaffold722 GLEAN promoter 285483 286482 0.934305 - . ID=CGI_10012202; scaffold722 TRF Tandem_Repeat 285560 285614 110 + . . scaffold722 WUBlastX DNA_PiggyBac 286532 286762 63 - . . scaffold722 TRF Tandem_Repeat 288230 288300 142 + . . scaffold722 TRF Tandem_Repeat 289557 289641 89 + . . scaffold722 TRF Tandem_Repeat 289557 289641 98 + . . scaffold722 TRF Tandem_Repeat 289567 289636 113 + . . scaffold722 TRF Tandem_Repeat 289650 290435 1338 + . . scaffold722 WUBlastX LINE_Jockey 299682 299990 28 + . . scaffold722 WUBlastX LINE_CR1-L2 299748 299975 54 + . . scaffold722 WUBlastX LINE_L2 299796 299999 143 + . . scaffold722 WUBlastX LINE_CR1-L2 299996 300298 113 + . . scaffold722 WUBlastX LINE_CR1-L2 299996 300214 140 + . . scaffold722 WUBlastX LTR_Ngaro 301096 301245 102 - . . scaffold722 WUBlastX LTR_Ngaro 301283 301540 32 - . . scaffold722 WUBlastX LTR_Ngaro 301397 301738 34 - . . scaffold722 WUBlastX LTR_Ngaro 301400 301651 99 - . . scaffold722 WUBlastX LTR_Ngaro 301644 301910 32 - . . scaffold722 WUBlastX LTR_Ngaro 301882 302295 288 - . . scaffold722 WUBlastX LTR_Ngaro 302292 303473 819 - . . scaffold722 WUBlastX LTR_Ngaro 303451 304107 109 - . . scaffold722 TRF Tandem_Repeat 311986 312080 181 + . . scaffold723 TRF Tandem_Repeat 2305 2337 66 + . . scaffold723 GLEAN mRNA 4623 5720 0.48523 - . ID=CGI_10015249; scaffold723 GLEAN promoter 5721 6720 0.48523 - . ID=CGI_10015249; scaffold723 GLEAN mRNA 11435 12658 0.997293 - . ID=CGI_10015250; scaffold723 GLEAN promoter 12659 13658 0.997293 - . ID=CGI_10015250; scaffold723 GLEAN mRNA 18846 26241 0.999429 - . ID=CGI_10015251; scaffold723 GLEAN promoter 26242 27241 0.999429 - . ID=CGI_10015251; scaffold723 GLEAN mRNA 28047 33496 0.816854 - . ID=CGI_10015252; scaffold723 TRF Tandem_Repeat 28826 28858 66 + . . scaffold723 GLEAN promoter 33497 34496 0.816854 - . ID=CGI_10015252; scaffold723 GLEAN mRNA 33819 38777 0.815807 - . ID=CGI_10015253; scaffold723 GLEAN promoter 38778 39777 0.815807 - . ID=CGI_10015253; scaffold723 GLEAN mRNA 42484 45495 0.999999 - . ID=CGI_10015254; scaffold723 GLEAN promoter 45496 46495 0.999999 - . ID=CGI_10015254; scaffold723 GLEAN promoter 47743 48742 1 + . ID=CGI_10015255; scaffold723 GLEAN mRNA 48743 52575 1 + . ID=CGI_10015255; scaffold723 TRF Tandem_Repeat 54163 54220 73 + . . scaffold723 TRF Tandem_Repeat 54169 54220 86 + . . scaffold723 TRF Tandem_Repeat 59155 59202 78 + . . scaffold723 GLEAN promoter 66351 67350 0.542233 + . ID=CGI_10015256; scaffold723 GLEAN mRNA 67351 82227 0.542233 + . ID=CGI_10015256; scaffold723 WUBlastX DNA_Sola 76391 76759 86 + . . scaffold723 WUBlastX DNA_Sola 80166 80459 66 + . . scaffold723 WUBlastX DNA_Sola 80468 80626 54 + . . scaffold723 GLEAN promoter 84241 85240 0.797154 + . ID=CGI_10015257; scaffold723 GLEAN mRNA 85241 116689 0.797154 + . ID=CGI_10015257; scaffold723 TRF Tandem_Repeat 91104 91148 54 + . . scaffold723 TRF Tandem_Repeat 105559 105650 184 + . . scaffold723 GLEAN mRNA 118613 131352 0.99909 - . ID=CGI_10015258; scaffold723 TRF Tandem_Repeat 127344 127430 59 + . . scaffold723 GLEAN promoter 130466 131465 0.246349 + . ID=CGI_10015259; scaffold723 GLEAN promoter 131353 132352 0.99909 - . ID=CGI_10015258; scaffold723 GLEAN mRNA 131466 141866 0.246349 + . ID=CGI_10015259; scaffold723 TRF Tandem_Repeat 132135 132193 109 + . . scaffold723 TRF Tandem_Repeat 139582 139655 148 + . . scaffold723 TRF Tandem_Repeat 143153 143206 108 + . . scaffold723 GLEAN mRNA 144375 145864 1 - . ID=CGI_10015260; scaffold723 GLEAN promoter 145865 146864 1 - . ID=CGI_10015260; scaffold723 TRF Tandem_Repeat 148284 148329 92 + . . scaffold723 TRF Tandem_Repeat 153052 153151 112 + . . scaffold723 GLEAN promoter 157613 158612 0.593314 + . ID=CGI_10015261; scaffold723 GLEAN mRNA 158613 161913 0.593314 + . ID=CGI_10015261; scaffold723 TRF Tandem_Repeat 162034 162064 62 + . . scaffold723 TRF Tandem_Repeat 162263 162333 142 + . . scaffold723 TRF Tandem_Repeat 165978 166083 131 + . . scaffold723 TRF Tandem_Repeat 166085 166517 392 + . . scaffold723 TRF Tandem_Repeat 166100 166512 321 + . . scaffold723 TRF Tandem_Repeat 166101 166517 343 + . . scaffold723 GLEAN promoter 166886 167885 0.999898 + . ID=CGI_10015262; scaffold723 TRF Tandem_Repeat 167422 167463 84 + . . scaffold723 GLEAN mRNA 167886 174196 0.999898 + . ID=CGI_10015262; scaffold723 TRF Tandem_Repeat 170181 170236 112 + . . scaffold723 TRF Tandem_Repeat 175417 175481 130 + . . scaffold723 GLEAN mRNA 194118 214562 0.999791 - . ID=CGI_10015263; scaffold723 WUBlastX LTR_Gypsy 206039 208108 1586 - . . scaffold723 WUBlastX LTR_Gypsy 208111 209526 979 - . . scaffold723 WUBlastX LTR_Gypsy 209104 209604 85 - . . scaffold723 WUBlastX LTR_Gypsy 209616 209957 292 - . . scaffold723 TRF Tandem_Repeat 211919 212098 62 + . . scaffold723 TRF Tandem_Repeat 212019 212103 82 + . . scaffold723 TRF Tandem_Repeat 213563 213612 84 + . . scaffold723 GLEAN promoter 214563 215562 0.999791 - . ID=CGI_10015263; scaffold723 TRF Tandem_Repeat 219161 219201 82 + . . scaffold723 TRF Tandem_Repeat 219384 219410 54 + . . scaffold723 TRF Tandem_Repeat 219408 219443 72 + . . scaffold723 TRF Tandem_Repeat 219942 220008 62 + . . scaffold723 TRF Tandem_Repeat 219942 220008 71 + . . scaffold723 WUBlastX LTR_Gypsy 220019 220234 42 - . . scaffold723 WUBlastX LTR_Gypsy 220025 220723 41 - . . scaffold723 WUBlastX LTR_Gypsy 220883 221326 47 - . . scaffold723 WUBlastX LTR_Gypsy 220952 221350 68 - . . scaffold723 WUBlastX LTR_DIRS 222977 223192 60 - . . scaffold723 WUBlastX LTR_DIRS 223683 223841 37 - . . scaffold723 TRF Tandem_Repeat 228601 229409 762 + . . scaffold723 GLEAN mRNA 232784 252967 0.999348 - . ID=CGI_10015264; scaffold723 TRF Tandem_Repeat 238403 238481 86 + . . scaffold723 TRF Tandem_Repeat 243982 244111 260 + . . scaffold723 GLEAN promoter 252968 253967 0.999348 - . ID=CGI_10015264; scaffold723 GLEAN mRNA 253434 266609 0.999119 - . ID=CGI_10015265; scaffold723 GLEAN promoter 266610 267609 0.999119 - . ID=CGI_10015265; scaffold723 GLEAN mRNA 267086 272441 0.93117 - . ID=CGI_10015266; scaffold723 TRF Tandem_Repeat 269312 269364 54 + . . scaffold723 GLEAN promoter 272442 273441 0.93117 - . ID=CGI_10015266; scaffold723 TRF Tandem_Repeat 272480 272517 67 + . . scaffold723 GLEAN mRNA 272548 276003 1 - . ID=CGI_10015267; scaffold723 GLEAN promoter 276004 277003 1 - . ID=CGI_10015267; scaffold723 TRF Tandem_Repeat 283947 283974 56 + . . scaffold723 TRF Tandem_Repeat 283974 284002 58 + . . scaffold723 GLEAN mRNA 285307 287380 1 - . ID=CGI_10015268; scaffold723 GLEAN promoter 287381 288380 1 - . ID=CGI_10015268; scaffold723 TRF Tandem_Repeat 291858 291893 72 + . . scaffold723 GLEAN promoter 312507 313506 0.481188 + . ID=CGI_10015269; scaffold723 GLEAN promoter 312936 313935 0.999372 + . ID=CGI_10015270; scaffold723 WUBlastX LINE_L1 313240 313758 46 + . . scaffold723 WUBlastX LINE_L1 313432 313908 51 + . . scaffold723 GLEAN mRNA 313507 313764 0.481188 + . ID=CGI_10015269; scaffold723 GLEAN mRNA 313936 314145 0.999372 + . ID=CGI_10015270; scaffold723 GLEAN promoter 315385 316384 1 + . ID=CGI_10015271; scaffold723 GLEAN mRNA 316385 321589 1 + . ID=CGI_10015271; scaffold723 WUBlastX LTR_Gypsy 323353 324093 84 - . . scaffold723 WUBlastX LTR_Gypsy 323554 324060 145 - . . scaffold723 WUBlastX LTR_Gypsy 324086 324211 60 - . . scaffold723 TRF Tandem_Repeat 333986 334130 209 + . . scaffold723 TRF Tandem_Repeat 341845 341920 143 + . . scaffold723 TRF Tandem_Repeat 341847 341930 54 + . . scaffold723 GLEAN promoter 341971 342970 0.539645 + . ID=CGI_10015272; scaffold723 TRF Tandem_Repeat 342060 342127 136 + . . scaffold723 TRF Tandem_Repeat 342413 342457 90 + . . scaffold723 GLEAN mRNA 342971 355680 0.539645 + . ID=CGI_10015272; scaffold723 TRF Tandem_Repeat 351477 352256 963 + . . scaffold723 TRF Tandem_Repeat 353983 354177 183 + . . scaffold723 TRF Tandem_Repeat 357874 358059 155 + . . scaffold723 TRF Tandem_Repeat 357880 358053 80 + . . scaffold723 TRF Tandem_Repeat 357885 358059 133 + . . scaffold723 TRF Tandem_Repeat 357901 358060 95 + . . scaffold723 TRF Tandem_Repeat 360204 360363 128 + . . scaffold723 WUBlastX LTR_Gypsy 360995 361051 24 + . . scaffold723 WUBlastX LTR_Gypsy-Troyk 361039 361860 524 + . . scaffold723 WUBlastX LTR_Gypsy-Troyk 361039 361713 611 + . . scaffold723 WUBlastX LTR_Gypsy-Troyk 361850 362392 340 + . . scaffold723 WUBlastX LTR_Gypsy-Troyk 362389 363543 459 + . . scaffold723 WUBlastX LTR_Gypsy-Troyk 363543 363707 84 + . . scaffold723 WUBlastX LTR_Gypsy-Troyk 364023 364208 160 + . . scaffold723 GLEAN mRNA 365880 366125 0.999984 - . ID=CGI_10015273; scaffold723 GLEAN promoter 366126 367125 0.999984 - . ID=CGI_10015273; scaffold723 GLEAN promoter 366881 367880 0.54627 + . ID=CGI_10015274; scaffold723 GLEAN mRNA 367881 387626 0.54627 + . ID=CGI_10015274; scaffold723 TRF Tandem_Repeat 372038 372082 90 + . . scaffold723 TRF Tandem_Repeat 372440 372485 92 + . . scaffold723 TRF Tandem_Repeat 377948 378334 432 + . . scaffold723 TRF Tandem_Repeat 382706 385000 2832 + . . scaffold723 TRF Tandem_Repeat 382706 385000 2946 + . . scaffold723 GLEAN mRNA 395743 409753 0.999949 - . ID=CGI_10015275; scaffold723 TRF Tandem_Repeat 397085 397314 255 + . . scaffold723 WUBlastX LINE_RTE-BovB 398718 398873 56 + . . scaffold723 WUBlastX LINE_RTE-BovB 398878 399879 440 + . . scaffold723 TRF Tandem_Repeat 401803 404060 3183 + . . scaffold723 TRF Tandem_Repeat 405031 405085 110 + . . scaffold723 TRF Tandem_Repeat 408759 408789 53 + . . scaffold723 GLEAN promoter 409754 410753 0.999949 - . ID=CGI_10015275; scaffold723 TRF Tandem_Repeat 413126 414705 1702 + . . scaffold723 GLEAN promoter 414897 415896 0.9803 + . ID=CGI_10015276; scaffold723 GLEAN mRNA 415897 418390 0.9803 + . ID=CGI_10015276; scaffold724 TRF Tandem_Repeat 7722 7773 104 + . . scaffold724 TRF Tandem_Repeat 8649 8708 120 + . . scaffold724 GLEAN mRNA 22834 27052 0.999674 - . ID=CGI_10011484; scaffold724 TRF Tandem_Repeat 25425 25467 59 + . . scaffold724 GLEAN promoter 27053 28052 0.999674 - . ID=CGI_10011484; scaffold724 GLEAN mRNA 28049 31788 0.999998 - . ID=CGI_10011485; scaffold724 GLEAN promoter 31789 32788 0.999998 - . ID=CGI_10011485; scaffold724 TRF Tandem_Repeat 35830 35890 113 + . . scaffold724 TRF Tandem_Repeat 36009 36040 64 + . . scaffold724 GLEAN mRNA 37356 37775 0.326296 - . ID=CGI_10011486; scaffold724 GLEAN promoter 37776 38775 0.326296 - . ID=CGI_10011486; scaffold724 GLEAN promoter 39471 40470 0.999999 + . ID=CGI_10011487; scaffold724 GLEAN mRNA 40471 45638 0.999999 + . ID=CGI_10011487; scaffold724 TRF Tandem_Repeat 43956 44019 110 + . . scaffold724 GLEAN mRNA 49908 51641 0.737974 - . ID=CGI_10011488; scaffold724 GLEAN promoter 51642 52641 0.737974 - . ID=CGI_10011488; scaffold724 TRF Tandem_Repeat 52855 52908 108 + . . scaffold724 TRF Tandem_Repeat 56264 56346 148 + . . scaffold724 TRF Tandem_Repeat 58247 58282 72 + . . scaffold724 WUBlastX LINE_RTE-BovB 58455 58547 24 - . . scaffold724 WUBlastX LINE_RTE-BovB 58746 58934 50 - . . scaffold724 WUBlastX LINE_RTE-BovB 58782 59174 40 - . . scaffold724 WUBlastX LINE_RTE-BovB 59262 59363 34 - . . scaffold724 WUBlastX LINE_RTE-BovB 59265 59408 30 - . . scaffold724 WUBlastX LINE_RTE-BovB 59390 59662 57 - . . scaffold724 TRF Tandem_Repeat 62230 62258 58 + . . scaffold724 GLEAN mRNA 65942 68979 1 - . ID=CGI_10011489; scaffold724 GLEAN promoter 68980 69979 1 - . ID=CGI_10011489; scaffold724 GLEAN mRNA 70245 85706 0.567559 - . ID=CGI_10011490; scaffold724 GLEAN promoter 85707 86706 0.567559 - . ID=CGI_10011490; scaffold724 WUBlastX DNA_TcMar-Tc1 86107 87102 491 - . . scaffold724 GLEAN mRNA 93337 98512 0.999999 - . ID=CGI_10011491; scaffold724 GLEAN promoter 98513 99512 0.999999 - . ID=CGI_10011491; scaffold724 GLEAN promoter 99989 100988 0.991247 + . ID=CGI_10011492; scaffold724 GLEAN mRNA 100989 101432 0.991247 + . ID=CGI_10011492; scaffold724 GLEAN mRNA 105670 107963 1 - . ID=CGI_10011493; scaffold724 TRF Tandem_Repeat 107082 107208 141 + . . scaffold724 GLEAN promoter 107964 108963 1 - . ID=CGI_10011493; scaffold724 TRF Tandem_Repeat 109119 110173 998 + . . scaffold724 TRF Tandem_Repeat 109120 110173 1127 + . . scaffold724 TRF Tandem_Repeat 109120 110173 1120 + . . scaffold724 WUBlastX DNA_IS4EU 110738 111052 112 + . . scaffold724 WUBlastX DNA_IS4EU 111784 111945 52 + . . scaffold724 WUBlastX DNA_IS4EU 111811 111972 41 + . . scaffold724 WUBlastX DNA_IS4EU 112566 113537 64 + . . scaffold724 WUBlastX DNA_IS4EU 112812 113582 225 + . . scaffold724 GLEAN mRNA 133333 139424 1 - . ID=CGI_10011494; scaffold724 GLEAN promoter 139425 140424 1 - . ID=CGI_10011494; scaffold724 TRF Tandem_Repeat 151479 151523 51 + . . scaffold724 GLEAN promoter 151838 152837 0.618117 + . ID=CGI_10011495; scaffold724 GLEAN mRNA 152838 153449 0.618117 + . ID=CGI_10011495; scaffold724 GLEAN mRNA 155235 159321 1 - . ID=CGI_10011496; scaffold724 GLEAN promoter 159322 160321 1 - . ID=CGI_10011496; scaffold724 TRF Tandem_Repeat 162064 162104 82 + . . scaffold724 TRF Tandem_Repeat 162104 162129 52 + . . scaffold724 GLEAN promoter 164870 165869 1 + . ID=CGI_10011497; scaffold724 TRF Tandem_Repeat 164882 164920 78 + . . scaffold724 GLEAN mRNA 165870 171217 1 + . ID=CGI_10011497; scaffold724 GLEAN mRNA 172076 175146 1 - . ID=CGI_10011498; scaffold724 TRF Tandem_Repeat 172327 172399 146 + . . scaffold724 TRF Tandem_Repeat 174080 174137 116 + . . scaffold724 TRF Tandem_Repeat 174440 174488 55 + . . scaffold724 GLEAN promoter 175147 176146 1 - . ID=CGI_10011498; scaffold724 GLEAN mRNA 177667 181901 0.999828 - . ID=CGI_10011499; scaffold724 GLEAN promoter 181902 182901 0.999828 - . ID=CGI_10011499; scaffold724 TRF Tandem_Repeat 188039 188090 104 + . . scaffold724 GLEAN promoter 197862 198861 0.996199 + . ID=CGI_10011500; scaffold724 GLEAN mRNA 198862 200526 0.996199 + . ID=CGI_10011500; scaffold724 WUBlastX LTR_Gypsy 199999 200319 42 + . . scaffold724 TRF Tandem_Repeat 203702 203754 97 + . . scaffold724 TRF Tandem_Repeat 204384 204418 52 + . . scaffold724 TRF Tandem_Repeat 204616 205418 1266 + . . scaffold724 TRF Tandem_Repeat 206002 206041 80 + . . scaffold724 TRF Tandem_Repeat 209035 209079 90 + . . scaffold724 GLEAN promoter 211434 212433 0.325811 + . ID=CGI_10011501; scaffold724 GLEAN mRNA 212434 227388 0.325811 + . ID=CGI_10011501; scaffold724 TRF Tandem_Repeat 214310 214334 50 + . . scaffold724 TRF Tandem_Repeat 221191 221384 234 + . . scaffold724 TRF Tandem_Repeat 222015 222046 64 + . . scaffold724 TRF Tandem_Repeat 222658 222682 50 + . . scaffold724 WUBlastX LINE_L1-Tx1 238284 238631 39 + . . scaffold724 WUBlastX LINE_L1-Tx1 239280 239423 27 + . . scaffold724 TRF Tandem_Repeat 240051 240091 55 + . . scaffold724 TRF Tandem_Repeat 240592 240651 120 + . . scaffold724 TRF Tandem_Repeat 241032 241148 134 + . . scaffold724 TRF Tandem_Repeat 241581 241638 116 + . . scaffold724 GLEAN mRNA 249352 251765 0.643689 - . ID=CGI_10011502; scaffold724 TRF Tandem_Repeat 250110 250231 87 + . . scaffold724 GLEAN promoter 251766 252765 0.643689 - . ID=CGI_10011502; scaffold724 TRF Tandem_Repeat 253636 253674 78 + . . scaffold724 TRF Tandem_Repeat 266606 266650 90 + . . scaffold725 WUBlastX LTR_Gypsy 3 506 156 - . . scaffold726 GLEAN promoter 1 573 1 + . ID=CGI_10008399; scaffold726 GLEAN mRNA 574 1635 1 + . ID=CGI_10008399; scaffold726 GLEAN mRNA 11960 25224 0.937542 - . ID=CGI_10008400; scaffold726 GLEAN promoter 25225 26224 0.937542 - . ID=CGI_10008400; scaffold726 GLEAN promoter 26594 27593 0.998789 + . ID=CGI_10008401; scaffold726 GLEAN mRNA 27594 36188 0.998789 + . ID=CGI_10008401; scaffold726 GLEAN promoter 47086 48085 0.99982 + . ID=CGI_10008402; scaffold726 GLEAN mRNA 48086 64043 0.99982 + . ID=CGI_10008402; scaffold726 GLEAN mRNA 76896 97309 0.999998 - . ID=CGI_10008403; scaffold726 GLEAN promoter 96835 97834 1 + . ID=CGI_10008404; scaffold726 GLEAN promoter 97310 98309 0.999998 - . ID=CGI_10008403; scaffold726 GLEAN mRNA 97835 101651 1 + . ID=CGI_10008404; scaffold726 GLEAN mRNA 105981 109809 0.999351 - . ID=CGI_10008405; scaffold726 GLEAN promoter 109810 110809 0.999351 - . ID=CGI_10008405; scaffold726 GLEAN promoter 111757 112756 0.999351 + . ID=CGI_10008406; scaffold726 GLEAN mRNA 112757 131747 0.999351 + . ID=CGI_10008406; scaffold726 GLEAN mRNA 126184 127467 0.531615 - . ID=CGI_10008407; scaffold726 GLEAN promoter 127468 128467 0.531615 - . ID=CGI_10008407; scaffold726 GLEAN promoter 141850 142849 0.999068 + . ID=CGI_10008408; scaffold726 GLEAN mRNA 142850 143875 0.999068 + . ID=CGI_10008408; scaffold726 GLEAN mRNA 145816 149470 1 - . ID=CGI_10008409; scaffold726 GLEAN promoter 149061 150060 1 + . ID=CGI_10008410; scaffold726 GLEAN promoter 149471 150470 1 - . ID=CGI_10008409; scaffold726 GLEAN mRNA 150061 154252 1 + . ID=CGI_10008410; scaffold726 GLEAN mRNA 155562 172041 1 - . ID=CGI_10008411; scaffold726 GLEAN promoter 167120 168119 0.999351 + . ID=CGI_10008412; scaffold726 GLEAN mRNA 168120 186355 0.999351 + . ID=CGI_10008412; scaffold726 GLEAN promoter 172042 173041 1 - . ID=CGI_10008411; scaffold726 GLEAN promoter 194859 195858 0.809137 + . ID=CGI_10008413; scaffold726 GLEAN mRNA 195859 197902 0.809137 + . ID=CGI_10008413; scaffold726 GLEAN mRNA 201248 203909 1 - . ID=CGI_10008414; scaffold726 GLEAN promoter 203910 204909 1 - . ID=CGI_10008414; scaffold728 WUBlastX LINE_RTE-X 2446 2988 117 - . . scaffold728 WUBlastX LINE_RTE-X 2617 3117 122 - . . scaffold728 WUBlastX LINE_RTE-X 3129 3419 135 - . . scaffold728 WUBlastX LINE_RTE-X 3443 3820 198 - . . scaffold728 WUBlastX LINE_RTE-X 3446 3949 172 - . . scaffold728 WUBlastX LINE_RTE-X 3819 3980 90 + . . scaffold728 WUBlastX LTR_Gypsy 9315 9704 47 + . . scaffold728 WUBlastX LTR_Gypsy-Cigr 9378 9719 113 + . . scaffold728 WUBlastX LTR_Gypsy 9718 10161 48 + . . scaffold728 WUBlastX LTR_Copia 9883 10224 56 + . . scaffold728 WUBlastX LTR_Gypsy 10021 10290 64 + . . scaffold728 WUBlastX LTR_Gypsy 10290 10532 37 + . . scaffold728 WUBlastX LTR_Gypsy 10492 11061 48 + . . scaffold728 WUBlastX LTR_Gypsy 10609 11364 257 + . . scaffold728 WUBlastX LTR_Gypsy 10861 11334 269 + . . scaffold728 WUBlastX LTR_ERV-Foamy 10930 11478 85 + . . scaffold728 WUBlastX LTR_Gypsy 11882 11962 22 + . . scaffold728 WUBlastX LTR_Gypsy 11960 11998 22 + . . scaffold728 TRF Tandem_Repeat 14550 14587 76 + . . scaffold728 TRF Tandem_Repeat 16879 17060 294 + . . scaffold728 GLEAN mRNA 20272 68331 0.887954 - . ID=CGI_10018226; scaffold728 TRF Tandem_Repeat 33477 33517 82 + . . scaffold728 TRF Tandem_Repeat 53755 53784 53 + . . scaffold728 TRF Tandem_Repeat 55156 55255 184 + . . scaffold728 GLEAN promoter 68332 69331 0.887954 - . ID=CGI_10018226; scaffold728 GLEAN promoter 73287 74286 1 + . ID=CGI_10018227; scaffold728 GLEAN mRNA 74287 76514 1 + . ID=CGI_10018227; scaffold728 TRF Tandem_Repeat 75154 75212 118 + . . scaffold728 GLEAN mRNA 80377 108098 0.99809 - . ID=CGI_10018228; scaffold728 TRF Tandem_Repeat 93783 93835 106 + . . scaffold728 WUBlastX LTR_Gypsy 105982 106089 22 - . . scaffold728 WUBlastX LTR_Gypsy 106667 106831 43 - . . scaffold728 WUBlastX LTR_Gypsy 107113 107238 27 - . . scaffold728 GLEAN promoter 108099 109098 0.99809 - . ID=CGI_10018228; scaffold728 GLEAN promoter 111614 112613 0.999999 + . ID=CGI_10018229; scaffold728 GLEAN mRNA 112614 128357 0.999999 + . ID=CGI_10018229; scaffold728 TRF Tandem_Repeat 122948 123003 112 + . . scaffold728 TRF Tandem_Repeat 126275 126322 51 + . . scaffold728 TRF Tandem_Repeat 126280 126329 73 + . . scaffold728 TRF Tandem_Repeat 126284 126329 56 + . . scaffold728 TRF Tandem_Repeat 126353 127434 1595 + . . scaffold728 GLEAN promoter 127774 128773 0.558395 + . ID=CGI_10018230; scaffold728 GLEAN mRNA 128774 136654 0.558395 + . ID=CGI_10018230; scaffold728 TRF Tandem_Repeat 130287 130323 56 + . . scaffold728 TRF Tandem_Repeat 148116 148156 82 + . . scaffold728 TRF Tandem_Repeat 149421 149580 101 + . . scaffold728 TRF Tandem_Repeat 149631 149664 68 + . . scaffold728 TRF Tandem_Repeat 157326 157362 56 + . . scaffold728 TRF Tandem_Repeat 157328 157371 52 + . . scaffold728 GLEAN promoter 163455 164454 0.997729 + . ID=CGI_10018231; scaffold728 GLEAN mRNA 164455 204088 0.997729 + . ID=CGI_10018231; scaffold728 WUBlastX DNA_hAT-Blackja 168400 168705 88 - . . scaffold728 TRF Tandem_Repeat 207893 207949 114 + . . scaffold728 WUBlastX LINE_RTE-X 208168 208389 30 - . . scaffold728 WUBlastX LINE_RTE-X 208225 208377 44 - . . scaffold728 WUBlastX LINE_RTE-X 208258 208932 105 - . . scaffold728 WUBlastX LINE_RTE-X 208658 209161 95 - . . scaffold728 WUBlastX LINE_L2 209196 209381 44 - . . scaffold728 WUBlastX LINE_RTE-X 209232 209420 82 - . . scaffold728 WUBlastX LINE_L1-Tx1 211541 211705 74 - . . scaffold728 WUBlastX LINE_RTE-X 213051 213398 71 - . . scaffold728 WUBlastX LINE_RTE-X 213117 213332 92 - . . scaffold728 WUBlastX LINE_RTE-X 213153 213398 102 - . . scaffold728 WUBlastX LINE_RTE-X 213159 213332 120 - . . scaffold728 WUBlastX LINE_RTE-X 213410 213829 24 - . . scaffold728 WUBlastX LINE_RTE-X 213410 213721 65 - . . scaffold728 WUBlastX LINE_L1 216182 216277 36 - . . scaffold728 WUBlastX LINE_RTE-BovB 217078 217353 35 - . . scaffold728 WUBlastX LINE_L1-Tx1 217122 217904 102 - . . scaffold728 WUBlastX LINE_RTE-BovB 217290 217949 487 - . . scaffold728 WUBlastX LINE_RTE-BovB 217293 218087 238 - . . scaffold728 WUBlastX LINE_L1-Tx1 217293 218231 78 - . . scaffold728 GLEAN promoter 218282 219281 1 + . ID=CGI_10018232; scaffold728 GLEAN mRNA 219282 221647 1 + . ID=CGI_10018232; scaffold728 GLEAN mRNA 224700 227997 1 - . ID=CGI_10018233; scaffold728 GLEAN promoter 227998 228997 1 - . ID=CGI_10018233; scaffold728 TRF Tandem_Repeat 228989 229039 102 + . . scaffold728 TRF Tandem_Repeat 230094 230144 93 + . . scaffold728 WUBlastX LINE_RTE-X 230163 230486 25 + . . scaffold728 WUBlastX LINE_RTE-X 230501 230584 24 + . . scaffold728 TRF Tandem_Repeat 231782 231812 62 + . . scaffold728 GLEAN promoter 237383 238382 0.931393 + . ID=CGI_10018234; scaffold728 TRF Tandem_Repeat 237966 238004 69 + . . scaffold728 GLEAN mRNA 238383 246121 0.931393 + . ID=CGI_10018234; scaffold728 TRF Tandem_Repeat 242016 242065 100 + . . scaffold728 TRF Tandem_Repeat 243008 243046 78 + . . scaffold728 TRF Tandem_Repeat 243348 243379 55 + . . scaffold728 GLEAN promoter 246074 247073 0.999351 + . ID=CGI_10018235; scaffold728 GLEAN mRNA 247074 249736 0.999351 + . ID=CGI_10018235; scaffold728 TRF Tandem_Repeat 249444 249480 74 + . . scaffold728 GLEAN promoter 251978 252977 1 + . ID=CGI_10018236; scaffold728 TRF Tandem_Repeat 252886 252926 82 + . . scaffold728 GLEAN mRNA 252978 253182 1 + . ID=CGI_10018236; scaffold728 WUBlastX DNA_TcMar-Pogo 259188 259511 80 - . . scaffold728 WUBlastX DNA_TcMar-Pogo 259200 259466 123 - . . scaffold728 WUBlastX DNA_TcMar-Pogo 259508 259648 82 - . . scaffold728 WUBlastX DNA_TcMar-Tigge 259648 259755 63 - . . scaffold728 WUBlastX DNA_TcMar-Tigge 259657 259773 32 - . . scaffold728 WUBlastX LINE_L2 268433 269179 122 + . . scaffold728 WUBlastX LINE_L2 268532 269161 124 + . . scaffold728 WUBlastX LINE_L1-Tx1 269681 270652 497 + . . scaffold728 WUBlastX LINE_L1-Tx1 270745 270807 23 + . . scaffold728 TRF Tandem_Repeat 274050 274097 96 + . . scaffold728 WUBlastX LTR_Gypsy-Cigr 280464 280694 93 + . . scaffold728 WUBlastX LTR_Gypsy 280669 280803 25 + . . scaffold728 WUBlastX LTR_Gypsy 280726 280971 50 + . . scaffold728 WUBlastX LTR_Gypsy 280753 280950 72 + . . scaffold728 WUBlastX LTR_Gypsy 280970 281296 42 + . . scaffold728 WUBlastX LTR_Gypsy 281158 282327 531 + . . scaffold728 WUBlastX LTR_Gypsy 281335 282327 845 + . . scaffold728 WUBlastX LTR_Gypsy 282305 283975 1020 + . . scaffold728 GLEAN promoter 283386 284385 0.999955 + . ID=CGI_10018237; scaffold728 WUBlastX LTR_Gypsy-Gmr1 283831 284073 48 + . . scaffold728 WUBlastX LTR_Gypsy 284115 284270 33 + . . scaffold728 GLEAN mRNA 284386 284925 0.999955 + . ID=CGI_10018237; scaffold728 GLEAN promoter 288578 289577 0.999676 + . ID=CGI_10018238; scaffold728 GLEAN mRNA 289578 295315 0.999676 + . ID=CGI_10018238; scaffold728 TRF Tandem_Repeat 290318 290362 65 + . . scaffold728 GLEAN mRNA 297899 301915 0.999995 - . ID=CGI_10018239; scaffold728 GLEAN promoter 301653 302652 0.302343 + . ID=CGI_10018240; scaffold728 GLEAN promoter 301916 302915 0.999995 - . ID=CGI_10018239; scaffold728 GLEAN mRNA 302653 315998 0.302343 + . ID=CGI_10018240; scaffold728 TRF Tandem_Repeat 304385 304419 70 + . . scaffold728 TRF Tandem_Repeat 305186 305562 481 + . . scaffold728 TRF Tandem_Repeat 305195 305569 551 + . . scaffold728 GLEAN mRNA 315513 315953 1 - . ID=CGI_10018241; scaffold728 GLEAN promoter 315954 316953 1 - . ID=CGI_10018241; scaffold728 TRF Tandem_Repeat 333577 333608 55 + . . scaffold728 TRF Tandem_Repeat 340453 340523 142 + . . scaffold728 TRF Tandem_Repeat 344971 345002 64 + . . scaffold728 TRF Tandem_Repeat 345818 345856 78 + . . scaffold728 TRF Tandem_Repeat 352638 352662 50 + . . scaffold728 TRF Tandem_Repeat 353053 353116 96 + . . scaffold728 TRF Tandem_Repeat 361720 361944 333 + . . scaffold728 TRF Tandem_Repeat 367432 367493 81 + . . scaffold728 TRF Tandem_Repeat 368954 370020 1478 + . . scaffold728 GLEAN mRNA 398441 405205 1 - . ID=CGI_10018242; scaffold728 GLEAN promoter 405206 406205 1 - . ID=CGI_10018242; scaffold728 WUBlastX DNA_TcMar-Tc1 407660 408103 29 + . . scaffold728 WUBlastX DNA_TcMar-Tc1 407756 408076 68 + . . scaffold728 WUBlastX DNA_TcMar-Tc1 407939 408100 76 + . . scaffold728 WUBlastX DNA_TcMar-Tc1 408010 408453 80 + . . scaffold728 WUBlastX DNA_TcMar-Tc1 408151 408456 117 + . . scaffold728 TRF Tandem_Repeat 409636 410588 1064 + . . scaffold728 WUBlastX LTR_Pao 412626 415139 260 + . . scaffold728 WUBlastX LTR_Pao 413061 416843 1538 + . . scaffold728 WUBlastX LTR_Pao 416436 416960 115 + . . scaffold728 WUBlastX LTR_Pao 417240 417293 23 + . . scaffold728 WUBlastX LTR_Pao 419100 419315 112 + . . scaffold728 WUBlastX DNA_NOF 420878 420979 23 - . . scaffold728 WUBlastX LTR_Ngaro 424205 424645 77 - . . scaffold728 WUBlastX LTR_Ngaro 424591 424923 62 - . . scaffold728 WUBlastX LTR_Ngaro 425057 426373 586 - . . scaffold728 WUBlastX LTR_Ngaro 426375 426593 41 - . . scaffold728 TRF Tandem_Repeat 432005 432192 157 + . . scaffold728 GLEAN mRNA 433423 437336 0.794385 - . ID=CGI_10018243; scaffold728 GLEAN promoter 437337 438336 0.794385 - . ID=CGI_10018243; scaffold728 WUBlastX DNA_En-Spm 437516 437902 139 + . . scaffold728 WUBlastX DNA_En-Spm 437606 438181 104 + . . scaffold728 WUBlastX DNA_En-Spm 437609 437998 175 + . . scaffold728 WUBlastX DNA_En-Spm 438102 438710 133 + . . scaffold728 WUBlastX DNA_En-Spm 438864 438953 26 + . . scaffold728 WUBlastX DNA_En-Spm 438939 439088 29 + . . scaffold728 TRF Tandem_Repeat 442120 442173 108 + . . scaffold728 TRF Tandem_Repeat 443420 443468 61 + . . scaffold728 TRF Tandem_Repeat 447064 447471 349 + . . scaffold728 TRF Tandem_Repeat 470026 470700 722 + . . scaffold728 GLEAN promoter 477323 478322 0.954881 + . ID=CGI_10018244; scaffold728 GLEAN mRNA 478323 478529 0.954881 + . ID=CGI_10018244; scaffold728 TRF Tandem_Repeat 481006 481070 87 + . . scaffold728 GLEAN mRNA 481148 496548 0.420812 - . ID=CGI_10018245; scaffold728 TRF Tandem_Repeat 493548 493597 59 + . . scaffold728 TRF Tandem_Repeat 496085 496137 106 + . . scaffold728 GLEAN promoter 496549 497548 0.420812 - . ID=CGI_10018245; scaffold728 TRF Tandem_Repeat 498706 498812 133 + . . scaffold728 TRF Tandem_Repeat 499306 499396 130 + . . scaffold728 TRF Tandem_Repeat 504620 504707 126 + . . scaffold728 TRF Tandem_Repeat 509047 509107 63 + . . scaffold728 TRF Tandem_Repeat 514263 514292 60 + . . scaffold728 WUBlastX LINE_L1 515487 515837 86 - . . scaffold728 WUBlastX LINE_L1 515493 515780 119 - . . scaffold728 WUBlastX LINE_L1-Tx1 515538 515780 134 - . . scaffold728 GLEAN mRNA 515874 516458 0.998757 - . ID=CGI_10018246; scaffold728 GLEAN promoter 516459 517458 0.998757 - . ID=CGI_10018246; scaffold728 WUBlastX LINE_CR1 516471 517187 166 - . . scaffold728 TRF Tandem_Repeat 521888 521965 63 + . . scaffold729 GLEAN mRNA 961 2271 0.999669 - . ID=CGI_10001544; scaffold729 GLEAN promoter 2272 3271 0.999669 - . ID=CGI_10001544; scaffold729 TRF Tandem_Repeat 2332 2364 66 + . . scaffold729 WUBlastX LINE_RTE-X 4329 4499 46 + . . scaffold729 GLEAN mRNA 6008 11672 0.999992 - . ID=CGI_10001545; scaffold729 TRF Tandem_Repeat 11155 11202 52 + . . scaffold729 TRF Tandem_Repeat 11476 11543 82 + . . scaffold729 GLEAN promoter 11673 12672 0.999992 - . ID=CGI_10001545; scaffold729 TRF Tandem_Repeat 14821 14929 55 + . . scaffold729 TRF Tandem_Repeat 14835 14931 171 + . . scaffold729 WUBlastX LINE_L1-Tx1 22831 23187 23 - . . scaffold729 WUBlastX RC_Helitron 23195 23938 236 - . . scaffold73 GLEAN mRNA 20746 29322 0.839116 - . ID=CGI_10002928; scaffold73 GLEAN promoter 29323 30322 0.839116 - . ID=CGI_10002928; scaffold73 GLEAN mRNA 38215 40165 0.991214 - . ID=CGI_10002929; scaffold73 GLEAN promoter 40166 41165 0.991214 - . ID=CGI_10002929; scaffold730 GLEAN promoter 3806 4805 1 + . ID=CGI_10019883; scaffold730 GLEAN mRNA 4806 7331 1 + . ID=CGI_10019883; scaffold730 TRF Tandem_Repeat 19840 19888 98 + . . scaffold730 TRF Tandem_Repeat 24538 24639 68 + . . scaffold730 TRF Tandem_Repeat 24840 24899 88 + . . scaffold730 WUBlastX LTR_Gypsy 25264 25572 216 - . . scaffold730 WUBlastX LTR_Gypsy 25568 25645 23 - . . scaffold730 WUBlastX LTR_Gypsy 25602 25778 23 - . . scaffold730 GLEAN promoter 25638 26637 1 + . ID=CGI_10019884; scaffold730 TRF Tandem_Repeat 26592 26619 56 + . . scaffold730 GLEAN mRNA 26638 29451 1 + . ID=CGI_10019884; scaffold730 GLEAN promoter 30263 31262 1 + . ID=CGI_10019885; scaffold730 GLEAN mRNA 31263 35805 1 + . ID=CGI_10019885; scaffold730 TRF Tandem_Repeat 35807 35944 276 + . . scaffold730 TRF Tandem_Repeat 45330 45376 94 + . . scaffold730 TRF Tandem_Repeat 45482 45555 148 + . . scaffold730 TRF Tandem_Repeat 53938 54011 112 + . . scaffold730 TRF Tandem_Repeat 55922 55964 86 + . . scaffold730 TRF Tandem_Repeat 57048 57133 131 + . . scaffold730 TRF Tandem_Repeat 57048 57133 127 + . . scaffold730 WUBlastX LINE_CR1 88857 89297 42 + . . scaffold730 WUBlastX LINE_L2 88944 89375 84 + . . scaffold730 WUBlastX LINE_CR1-L2 89010 89369 207 + . . scaffold730 WUBlastX LINE_L2 89019 89435 181 + . . scaffold730 WUBlastX LINE_CR1-L2 89387 89728 100 + . . scaffold730 WUBlastX LINE_L2 89743 89847 43 + . . scaffold730 WUBlastX LINE_CR1-L2 97710 98096 92 - . . scaffold730 WUBlastX LINE_CR1-L2 97719 98030 96 - . . scaffold730 WUBlastX LINE_CR1 98553 98918 29 - . . scaffold730 WUBlastX LINE_CR1-L2 98628 98927 36 - . . scaffold730 WUBlastX LINE_CR1-L2 98738 99076 36 - . . scaffold730 WUBlastX LINE_L2 98942 99031 45 - . . scaffold730 GLEAN mRNA 102559 103008 0.69447 - . ID=CGI_10019887; scaffold730 WUBlastX DNA_Maverick 102610 103080 23 - . . scaffold730 GLEAN promoter 103009 104008 0.69447 - . ID=CGI_10019887; scaffold730 TRF Tandem_Repeat 107390 107523 89 + . . scaffold730 WUBlastX LINE_L1 113168 113695 44 - . . scaffold730 WUBlastX LINE_L1-Tx1 113462 113668 51 - . . scaffold730 GLEAN promoter 113725 114724 0.404014 + . ID=CGI_10019888; scaffold730 WUBlastX LINE_L1-Tx1 114456 114521 22 - . . scaffold730 GLEAN mRNA 114725 144988 0.404014 + . ID=CGI_10019888; scaffold730 TRF Tandem_Repeat 115763 115928 217 + . . scaffold730 WUBlastX DNA_Kolobok 135552 135671 31 + . . scaffold730 TRF Tandem_Repeat 139615 139794 267 + . . scaffold730 GLEAN promoter 150993 151992 0.991657 + . ID=CGI_10019889; scaffold730 GLEAN mRNA 151993 154373 0.991657 + . ID=CGI_10019889; scaffold730 WUBlastX DNA_P 181216 182259 143 - . . scaffold730 WUBlastX DNA_P 182222 182932 73 - . . scaffold730 WUBlastX DNA_P 182477 183133 128 - . . scaffold730 WUBlastX DNA_P 182486 183034 152 - . . scaffold730 WUBlastX RC_Helitron 183846 184205 64 + . . scaffold730 WUBlastX RC_Helitron 184284 184346 31 + . . scaffold730 WUBlastX RC_Helitron 184308 184361 33 + . . scaffold730 WUBlastX RC_Helitron 185101 185178 20 + . . scaffold730 WUBlastX RC_Helitron 185140 185583 112 + . . scaffold730 WUBlastX RC_Helitron 185149 185505 119 + . . scaffold730 WUBlastX LTR_Pao 186877 187059 28 + . . scaffold730 TRF Tandem_Repeat 198126 198169 88 + . . scaffold730 TRF Tandem_Repeat 208138 208175 76 + . . scaffold730 WUBlastX LTR_Gypsy 208332 208370 24 + . . scaffold730 WUBlastX LTR_Gypsy 208809 209294 170 + . . scaffold730 WUBlastX LTR_Gypsy 208923 209294 335 + . . scaffold730 WUBlastX LTR_Gypsy 208923 209360 256 + . . scaffold730 WUBlastX LTR_Gypsy 209363 209689 117 + . . scaffold730 WUBlastX LTR_Gypsy 209423 209728 336 + . . scaffold730 WUBlastX LTR_Gypsy 209721 210299 368 + . . scaffold730 WUBlastX LTR_Gypsy 210299 210391 61 + . . scaffold730 WUBlastX LTR_Gypsy 210337 210642 69 + . . scaffold730 WUBlastX LTR_Gypsy 210391 210615 148 + . . scaffold730 WUBlastX LTR_Gypsy 210650 210961 39 + . . scaffold730 TRF Tandem_Repeat 214185 214372 83 + . . scaffold730 TRF Tandem_Repeat 254763 254827 60 + . . scaffold730 TRF Tandem_Repeat 255539 256295 751 + . . scaffold730 GLEAN promoter 257283 258282 0.999673 + . ID=CGI_10019891; scaffold730 GLEAN mRNA 258283 261536 0.999673 + . ID=CGI_10019891; scaffold730 GLEAN mRNA 262816 271880 0.998589 - . ID=CGI_10019892; scaffold730 WUBlastX LINE_RTE-X 267198 267452 61 - . . scaffold730 WUBlastX LINE_RTE-X 267276 267833 120 - . . scaffold730 WUBlastX LINE_RTE-X 267814 267912 23 - . . scaffold730 GLEAN promoter 268527 269526 0.999415 + . ID=CGI_10019893; scaffold730 GLEAN mRNA 269527 269922 0.999415 + . ID=CGI_10019893; scaffold730 TRF Tandem_Repeat 271145 271181 56 + . . scaffold730 TRF Tandem_Repeat 271319 271365 53 + . . scaffold730 GLEAN promoter 271881 272880 0.998589 - . ID=CGI_10019892; scaffold730 TRF Tandem_Repeat 335171 335212 75 + . . scaffold730 TRF Tandem_Repeat 341725 341754 60 + . . scaffold730 TRF Tandem_Repeat 342053 342164 143 + . . scaffold730 TRF Tandem_Repeat 343290 343324 63 + . . scaffold730 GLEAN promoter 343741 344740 1 + . ID=CGI_10019894; scaffold730 GLEAN mRNA 344741 356585 1 + . ID=CGI_10019894; scaffold730 TRF Tandem_Repeat 349943 349973 62 + . . scaffold730 TRF Tandem_Repeat 350055 350603 713 + . . scaffold730 TRF Tandem_Repeat 350055 350603 698 + . . scaffold730 TRF Tandem_Repeat 352818 353312 864 + . . scaffold730 TRF Tandem_Repeat 353282 353566 151 + . . scaffold730 TRF Tandem_Repeat 353528 353904 655 + . . scaffold730 GLEAN mRNA 359674 389340 0.587782 - . ID=CGI_10019895; scaffold730 WUBlastX LINE_L1-Tx1 371200 371532 48 - . . scaffold730 TRF Tandem_Repeat 384291 384318 56 + . . scaffold730 TRF Tandem_Repeat 384875 385004 136 + . . scaffold730 TRF Tandem_Repeat 385138 385229 121 + . . scaffold730 WUBlastX DNA_Crypton 387746 388087 72 - . . scaffold730 WUBlastX DNA_Crypton 388453 389073 65 - . . scaffold730 GLEAN promoter 389341 390340 0.587782 - . ID=CGI_10019895; scaffold730 WUBlastX LINE_L2 406700 407836 606 - . . scaffold730 WUBlastX LINE_CR1 407078 408052 111 - . . scaffold730 GLEAN mRNA 408682 411722 0.999676 - . ID=CGI_10019897; scaffold730 GLEAN promoter 411723 412722 0.999676 - . ID=CGI_10019897; scaffold730 GLEAN mRNA 414598 420290 0.268179 - . ID=CGI_10019898; scaffold730 GLEAN promoter 420291 421290 0.268179 - . ID=CGI_10019898; scaffold730 TRF Tandem_Repeat 426880 426924 90 + . . scaffold730 GLEAN mRNA 428381 455185 0.998255 - . ID=CGI_10019899; scaffold730 GLEAN promoter 430384 431383 1 + . ID=CGI_10019900; scaffold730 GLEAN mRNA 431384 432911 1 + . ID=CGI_10019900; scaffold730 TRF Tandem_Repeat 431832 432221 501 + . . scaffold730 TRF Tandem_Repeat 431832 432221 512 + . . scaffold730 GLEAN promoter 433822 434821 1 + . ID=CGI_10019901; scaffold730 GLEAN mRNA 434822 440445 1 + . ID=CGI_10019901; scaffold730 TRF Tandem_Repeat 437801 437887 165 + . . scaffold730 TRF Tandem_Repeat 443149 443432 434 + . . scaffold730 TRF Tandem_Repeat 445736 445917 173 + . . scaffold730 TRF Tandem_Repeat 453798 454317 519 + . . scaffold730 TRF Tandem_Repeat 453804 454317 573 + . . scaffold730 TRF Tandem_Repeat 453804 454317 614 + . . scaffold730 TRF Tandem_Repeat 453887 454057 163 + . . scaffold730 GLEAN promoter 454522 455521 1 + . ID=CGI_10019902; scaffold730 GLEAN promoter 455186 456185 0.998255 - . ID=CGI_10019899; scaffold730 GLEAN mRNA 455522 460210 1 + . ID=CGI_10019902; scaffold730 GLEAN mRNA 462476 464104 0.801924 - . ID=CGI_10019903; scaffold730 GLEAN promoter 463815 464814 0.99904 + . ID=CGI_10019904; scaffold730 GLEAN promoter 464105 465104 0.801924 - . ID=CGI_10019903; scaffold730 GLEAN mRNA 464815 470778 0.99904 + . ID=CGI_10019904; scaffold730 TRF Tandem_Repeat 465960 466121 315 + . . scaffold730 TRF Tandem_Repeat 468912 468987 57 + . . scaffold730 GLEAN mRNA 471418 473037 0.61701 - . ID=CGI_10019905; scaffold730 WUBlastX LTR_Gypsy 472084 472680 37 - . . scaffold730 GLEAN promoter 473038 474037 0.61701 - . ID=CGI_10019905; scaffold730 TRF Tandem_Repeat 477132 478535 2133 + . . scaffold730 WUBlastX DNA_NOF 480571 481269 80 - . . scaffold730 WUBlastX DNA_NOF 480679 481269 119 - . . scaffold730 WUBlastX DNA_NOF 482223 483674 172 - . . scaffold730 WUBlastX DNA_NOF 482319 483068 181 - . . scaffold730 WUBlastX DNA_NOF 482397 483200 178 - . . scaffold730 TRF Tandem_Repeat 486284 486324 82 + . . scaffold730 TRF Tandem_Repeat 486338 486377 62 + . . scaffold730 WUBlastX LINE_RTE-X 486669 487046 33 + . . scaffold730 WUBlastX LINE_RTE-X 487021 487086 34 + . . scaffold730 WUBlastX LINE_L2 493857 494969 317 + . . scaffold730 WUBlastX LINE_L2 494013 494954 517 + . . scaffold730 WUBlastX LINE_L2 494983 495906 478 + . . scaffold730 GLEAN mRNA 508442 528567 0.98119 - . ID=CGI_10019906; scaffold730 TRF Tandem_Repeat 512823 513132 566 + . . scaffold730 TRF Tandem_Repeat 515948 515996 98 + . . scaffold730 GLEAN promoter 528568 529567 0.98119 - . ID=CGI_10019906; scaffold730 GLEAN promoter 529261 530260 0.932897 + . ID=CGI_10019907; scaffold730 GLEAN mRNA 530261 532305 0.932897 + . ID=CGI_10019907; scaffold730 TRF Tandem_Repeat 531958 532030 146 + . . scaffold730 GLEAN promoter 543626 544625 0.999676 + . ID=CGI_10019908; scaffold730 GLEAN mRNA 544626 551877 0.999676 + . ID=CGI_10019908; scaffold730 GLEAN promoter 568674 569673 0.642848 + . ID=CGI_10019909; scaffold730 GLEAN mRNA 569674 570272 0.642848 + . ID=CGI_10019909; scaffold730 WUBlastX DNA_TcMar-Tc1 572796 573635 283 - . . scaffold730 WUBlastX DNA_TcMar-Tc1 573400 573678 98 - . . scaffold730 TRF Tandem_Repeat 597765 597798 50 + . . scaffold730 TRF Tandem_Repeat 597992 598079 144 + . . scaffold730 TRF Tandem_Repeat 605295 605328 68 + . . scaffold733 GLEAN mRNA 124 7924 0.999999 - . ID=CGI_10025860; scaffold733 GLEAN promoter 7925 8924 0.999999 - . ID=CGI_10025860; scaffold733 GLEAN mRNA 7962 27483 0.994156 - . ID=CGI_10025861; scaffold733 TRF Tandem_Repeat 10585 10622 76 + . . scaffold733 TRF Tandem_Repeat 10622 10676 110 + . . scaffold733 GLEAN promoter 27484 28483 0.994156 - . ID=CGI_10025861; scaffold733 WUBlastX LTR_Gypsy-Cigr 27560 28876 428 - . . scaffold733 WUBlastX LTR_Gypsy-Cigr 27794 30697 1245 - . . scaffold733 GLEAN promoter 31850 32849 1 + . ID=CGI_10025862; scaffold733 WUBlastX LTR_ERV1 31895 32080 34 - . . scaffold733 WUBlastX LTR_ERV1 31940 32179 36 - . . scaffold733 WUBlastX LTR_Copia 31943 32419 34 - . . scaffold733 GLEAN mRNA 32850 33356 1 + . ID=CGI_10025862; scaffold733 GLEAN mRNA 37672 49158 0.939016 - . ID=CGI_10025863; scaffold733 WUBlastX LTR_Gypsy 38891 39604 119 + . . scaffold733 WUBlastX LTR_Gypsy 39077 40333 1145 + . . scaffold733 WUBlastX LTR_Copia 40894 40989 26 + . . scaffold733 TRF Tandem_Repeat 45213 45954 796 + . . scaffold733 WUBlastX DNA_Maverick 49045 49197 60 - . . scaffold733 GLEAN promoter 49159 50158 0.939016 - . ID=CGI_10025863; scaffold733 WUBlastX DNA_Maverick 49242 49313 55 - . . scaffold733 WUBlastX LINE_L1-Tx1 49566 50495 214 - . . scaffold733 TRF Tandem_Repeat 53106 53137 50 + . . scaffold733 TRF Tandem_Repeat 54468 54494 54 + . . scaffold733 TRF Tandem_Repeat 56005 56059 92 + . . scaffold733 WUBlastX LTR_Gypsy 61263 62333 557 - . . scaffold733 WUBlastX LTR_Gypsy 61425 62300 600 - . . scaffold733 WUBlastX LTR_Gypsy 61683 62504 109 - . . scaffold733 WUBlastX LTR_Gypsy 62756 62854 21 - . . scaffold733 TRF Tandem_Repeat 64534 64577 88 + . . scaffold733 WUBlastX DNA_Harbinger 68955 69140 37 + . . scaffold733 WUBlastX DNA_Harbinger 70735 70869 68 + . . scaffold733 WUBlastX DNA_Harbinger 70750 70842 69 + . . scaffold733 WUBlastX DNA_Harbinger 71029 71334 39 + . . scaffold733 WUBlastX DNA_Harbinger 71092 71448 175 + . . scaffold733 TRF Tandem_Repeat 71700 71752 106 + . . scaffold733 GLEAN mRNA 72132 72805 1 - . ID=CGI_10025864; scaffold733 GLEAN promoter 72806 73805 1 - . ID=CGI_10025864; scaffold733 TRF Tandem_Repeat 80231 80550 525 + . . scaffold733 TRF Tandem_Repeat 82579 82603 50 + . . scaffold733 GLEAN mRNA 90368 90604 0.997822 - . ID=CGI_10025865; scaffold733 GLEAN promoter 90605 91604 0.997822 - . ID=CGI_10025865; scaffold733 GLEAN mRNA 92733 96493 0.93387 - . ID=CGI_10025866; scaffold733 GLEAN promoter 96494 97493 0.93387 - . ID=CGI_10025866; scaffold733 WUBlastX LINE_L1-Tx1 98509 100500 803 - . . scaffold733 TRF Tandem_Repeat 119152 119203 77 + . . scaffold733 WUBlastX LINE_CR1-L2 123439 124329 318 - . . scaffold733 WUBlastX LINE_L2 124175 124414 68 - . . scaffold733 WUBlastX LINE_L2 124323 124439 31 - . . scaffold733 WUBlastX LINE_CR1 128871 129122 25 - . . scaffold733 WUBlastX LINE_CR1 128913 129122 36 - . . scaffold733 WUBlastX LINE_CR1-L2 128979 129125 89 - . . scaffold733 WUBlastX LINE_CR1 129020 129463 100 - . . scaffold733 WUBlastX LINE_CR1 129086 129580 64 - . . scaffold733 WUBlastX LINE_CR1-L2 129122 129481 143 - . . scaffold733 TRF Tandem_Repeat 129653 129706 81 + . . scaffold733 TRF Tandem_Repeat 132732 132757 52 + . . scaffold733 TRF Tandem_Repeat 142709 142775 89 + . . scaffold733 TRF Tandem_Repeat 143270 143317 96 + . . scaffold733 TRF Tandem_Repeat 143493 143545 106 + . . scaffold733 TRF Tandem_Repeat 145712 145778 89 + . . scaffold733 WUBlastX LTR_Gypsy 147609 148277 68 + . . scaffold733 WUBlastX LTR_Gypsy-Cigr 147732 148511 158 + . . scaffold733 WUBlastX LTR_Gypsy 148239 148907 85 + . . scaffold733 WUBlastX LTR_Gypsy-Cigr 148680 150500 1085 + . . scaffold733 WUBlastX LTR_Delta 149529 150692 143 + . . scaffold733 TRF Tandem_Repeat 152766 152830 130 + . . scaffold733 WUBlastX LTR_Gypsy 154375 154887 98 + . . scaffold733 WUBlastX LTR_Gypsy-Cigr 154660 156462 941 + . . scaffold733 TRF Tandem_Repeat 165256 165331 125 + . . scaffold733 TRF Tandem_Repeat 166205 166951 1104 + . . scaffold733 TRF Tandem_Repeat 181753 181818 96 + . . scaffold733 TRF Tandem_Repeat 182692 184057 1908 + . . scaffold733 TRF Tandem_Repeat 187096 187128 66 + . . scaffold733 TRF Tandem_Repeat 188654 188706 88 + . . scaffold733 GLEAN mRNA 216063 223733 0.792042 - . ID=CGI_10025867; scaffold733 WUBlastX DNA_TcMar-m44 216318 217247 583 - . . scaffold733 WUBlastX DNA_TcMar-m44 217495 217659 29 - . . scaffold733 WUBlastX DNA_TcMar-m44 221317 222246 583 - . . scaffold733 WUBlastX DNA_TcMar-m44 222494 222658 29 - . . scaffold733 GLEAN promoter 223734 224733 0.792042 - . ID=CGI_10025867; scaffold733 GLEAN promoter 226504 227503 1 + . ID=CGI_10025868; scaffold733 GLEAN mRNA 227504 233338 1 + . ID=CGI_10025868; scaffold733 TRF Tandem_Repeat 227627 228132 940 + . . scaffold733 GLEAN mRNA 235584 237571 0.998274 - . ID=CGI_10025869; scaffold733 GLEAN promoter 237572 238571 0.998274 - . ID=CGI_10025869; scaffold733 TRF Tandem_Repeat 238020 238091 108 + . . scaffold733 GLEAN promoter 239072 240071 0.998744 + . ID=CGI_10025870; scaffold733 GLEAN mRNA 240072 273270 0.998744 + . ID=CGI_10025870; scaffold733 TRF Tandem_Repeat 254139 254583 748 + . . scaffold733 TRF Tandem_Repeat 254177 254496 256 + . . scaffold733 TRF Tandem_Repeat 258391 258590 348 + . . scaffold733 WUBlastX DNA_TcMar-Tc1 268580 269611 374 - . . scaffold733 GLEAN promoter 272463 273462 0.998656 + . ID=CGI_10025871; scaffold733 GLEAN mRNA 273463 276500 0.998656 + . ID=CGI_10025871; scaffold733 TRF Tandem_Repeat 294700 294741 84 + . . scaffold733 GLEAN promoter 294817 295816 0.439979 + . ID=CGI_10025872; scaffold733 GLEAN mRNA 295817 336645 0.439979 + . ID=CGI_10025872; scaffold733 TRF Tandem_Repeat 298769 299120 325 + . . scaffold733 TRF Tandem_Repeat 301908 301957 93 + . . scaffold733 TRF Tandem_Repeat 303750 303998 214 + . . scaffold733 TRF Tandem_Repeat 315238 315275 51 + . . scaffold733 TRF Tandem_Repeat 342303 342533 235 + . . scaffold733 GLEAN promoter 344952 345951 0.999672 + . ID=CGI_10025873; scaffold733 GLEAN mRNA 345952 361585 0.999672 + . ID=CGI_10025873; scaffold733 TRF Tandem_Repeat 360386 360675 303 + . . scaffold733 TRF Tandem_Repeat 360805 360845 73 + . . scaffold733 GLEAN promoter 363515 364514 0.999972 + . ID=CGI_10025874; scaffold733 GLEAN mRNA 364515 372452 0.999972 + . ID=CGI_10025874; scaffold733 GLEAN promoter 371581 372580 0.843432 + . ID=CGI_10025875; scaffold733 GLEAN mRNA 372581 407469 0.843432 + . ID=CGI_10025875; scaffold733 WUBlastX DNA_Kolobok 374869 375153 132 + . . scaffold733 WUBlastX DNA_Kolobok 375289 375513 117 + . . scaffold733 WUBlastX DNA_Kolobok 375742 375828 23 + . . scaffold733 WUBlastX DNA_Kolobok 375766 375822 30 + . . scaffold733 WUBlastX DNA_Kolobok 375970 376062 26 + . . scaffold733 WUBlastX DNA_Kolobok 376261 376509 78 + . . scaffold733 WUBlastX DNA_Kolobok 376842 377078 40 + . . scaffold733 WUBlastX DNA_Kolobok 377317 377553 103 + . . scaffold733 WUBlastX DNA_Kolobok 377953 378198 145 - . . scaffold733 TRF Tandem_Repeat 378913 378938 52 + . . scaffold733 TRF Tandem_Repeat 385361 385418 73 + . . scaffold733 TRF Tandem_Repeat 385367 385418 86 + . . scaffold733 TRF Tandem_Repeat 401482 402304 875 + . . scaffold733 GLEAN promoter 407619 408618 0.684241 + . ID=CGI_10025876; scaffold733 GLEAN mRNA 408619 548638 0.684241 + . ID=CGI_10025876; scaffold733 TRF Tandem_Repeat 410395 410741 586 + . . scaffold733 TRF Tandem_Repeat 410425 410852 215 + . . scaffold733 TRF Tandem_Repeat 411456 411501 92 + . . scaffold733 WUBlastX LINE_L2 413087 413638 224 - . . scaffold733 WUBlastX LINE_L2 413102 413905 164 - . . scaffold733 TRF Tandem_Repeat 417970 418017 82 + . . scaffold733 TRF Tandem_Repeat 424204 424475 237 + . . scaffold733 WUBlastX LINE_DRE 431961 432005 23 + . . scaffold733 TRF Tandem_Repeat 433085 433149 80 + . . scaffold733 TRF Tandem_Repeat 436963 437012 66 + . . scaffold733 WUBlastX LINE_Penelope 471642 472079 30 + . . scaffold733 TRF Tandem_Repeat 485085 485126 84 + . . scaffold733 TRF Tandem_Repeat 486286 486314 58 + . . scaffold733 WUBlastX LINE_Penelope 513063 513179 28 - . . scaffold733 WUBlastX LINE_Penelope 513170 513403 32 - . . scaffold733 WUBlastX LINE_Penelope 513412 513699 130 - . . scaffold733 WUBlastX LINE_Penelope 513415 513837 127 - . . scaffold733 TRF Tandem_Repeat 521481 521528 96 + . . scaffold733 TRF Tandem_Repeat 522157 522211 101 + . . scaffold733 TRF Tandem_Repeat 531190 531384 336 + . . scaffold733 TRF Tandem_Repeat 536129 536873 653 + . . scaffold733 GLEAN promoter 548969 549968 0.999658 + . ID=CGI_10025877; scaffold733 GLEAN mRNA 549969 555168 0.999658 + . ID=CGI_10025877; scaffold733 TRF Tandem_Repeat 554479 554555 154 + . . scaffold733 GLEAN promoter 556011 557010 0.999536 + . ID=CGI_10025878; scaffold733 GLEAN mRNA 557011 572357 0.999536 + . ID=CGI_10025878; scaffold733 TRF Tandem_Repeat 567023 567114 168 + . . scaffold733 GLEAN promoter 575399 576398 1 + . ID=CGI_10025879; scaffold733 GLEAN mRNA 576399 581237 1 + . ID=CGI_10025879; scaffold733 TRF Tandem_Repeat 583649 583707 111 + . . scaffold733 TRF Tandem_Repeat 584730 584897 311 + . . scaffold733 GLEAN promoter 615636 616635 1 + . ID=CGI_10025880; scaffold733 GLEAN mRNA 616636 624262 1 + . ID=CGI_10025880; scaffold733 GLEAN promoter 627155 628154 1 + . ID=CGI_10025881; scaffold733 GLEAN mRNA 628155 634462 1 + . ID=CGI_10025881; scaffold733 GLEAN mRNA 635239 645830 0.357557 - . ID=CGI_10025882; scaffold733 TRF Tandem_Repeat 641404 641690 337 + . . scaffold733 GLEAN promoter 645831 646830 0.357557 - . ID=CGI_10025882; scaffold733 GLEAN mRNA 646732 647262 0.991749 - . ID=CGI_10025883; scaffold733 GLEAN promoter 647263 648262 0.991749 - . ID=CGI_10025883; scaffold733 WUBlastX LINE_CR1-L2 650561 650752 20 - . . scaffold733 WUBlastX LINE_CR1-L2 650570 650710 22 - . . scaffold733 WUBlastX LINE_CR1-L2 650585 650632 25 - . . scaffold733 WUBlastX LINE_CR1 650766 651002 28 - . . scaffold733 WUBlastX LINE_CR1-L2 650808 651107 98 - . . scaffold733 WUBlastX LINE_CR1 651139 651315 83 - . . scaffold733 WUBlastX LINE_L2 651208 651375 73 - . . scaffold733 WUBlastX LINE_CR1 651211 651342 93 - . . scaffold733 TRF Tandem_Repeat 661848 661883 63 + . . scaffold733 TRF Tandem_Repeat 667201 667239 78 + . . scaffold733 GLEAN promoter 682050 683049 0.755238 + . ID=CGI_10025885; scaffold733 GLEAN mRNA 683050 706332 0.755238 + . ID=CGI_10025885; scaffold733 TRF Tandem_Repeat 688944 690016 1622 + . . scaffold733 TRF Tandem_Repeat 688944 690016 1617 + . . scaffold733 TRF Tandem_Repeat 688944 690016 1637 + . . scaffold733 TRF Tandem_Repeat 692101 692383 125 + . . scaffold733 TRF Tandem_Repeat 699642 699758 114 + . . scaffold733 TRF Tandem_Repeat 702376 702681 414 + . . scaffold733 TRF Tandem_Repeat 712550 712589 80 + . . scaffold733 WUBlastX LINE_RTE-X 715361 717193 750 + . . scaffold733 TRF Tandem_Repeat 718142 718174 66 + . . scaffold733 TRF Tandem_Repeat 722088 722198 161 + . . scaffold733 WUBlastX LINE_RTE-X 723983 724759 24 - . . scaffold733 WUBlastX LINE_RTE-X 724147 724338 42 - . . scaffold733 WUBlastX LINE_RTE-X 724148 724759 33 - . . scaffold733 WUBlastX DNA_Crypton 735511 735777 78 + . . scaffold733 GLEAN promoter 739608 740607 0.888474 + . ID=CGI_10025887; scaffold733 GLEAN mRNA 740608 745472 0.888474 + . ID=CGI_10025887; scaffold733 TRF Tandem_Repeat 740978 741044 134 + . . scaffold733 GLEAN promoter 749270 750269 0.359192 + . ID=CGI_10025888; scaffold733 GLEAN mRNA 750270 765650 0.359192 + . ID=CGI_10025888; scaffold733 TRF Tandem_Repeat 757588 757624 65 + . . scaffold733 GLEAN promoter 765241 766240 0.999999 + . ID=CGI_10025889; scaffold733 GLEAN mRNA 766241 772186 0.999999 + . ID=CGI_10025889; scaffold733 TRF Tandem_Repeat 768168 768242 55 + . . scaffold733 TRF Tandem_Repeat 774854 774895 50 + . . scaffold733 GLEAN mRNA 777150 778601 0.997874 - . ID=CGI_10025890; scaffold733 GLEAN promoter 778602 779601 0.997874 - . ID=CGI_10025890; scaffold733 TRF Tandem_Repeat 781864 781964 175 + . . scaffold733 TRF Tandem_Repeat 788378 788457 87 + . . scaffold733 TRF Tandem_Repeat 788378 788457 115 + . . scaffold733 TRF Tandem_Repeat 788387 788458 99 + . . scaffold733 WUBlastX LINE_RTE-X 789620 790396 39 - . . scaffold733 WUBlastX LINE_RTE-X 789815 790399 118 - . . scaffold733 GLEAN promoter 801642 802641 0.680521 + . ID=CGI_10025891; scaffold733 GLEAN mRNA 802642 826713 0.680521 + . ID=CGI_10025891; scaffold733 TRF Tandem_Repeat 805842 805891 100 + . . scaffold733 TRF Tandem_Repeat 817908 818206 463 + . . scaffold733 TRF Tandem_Repeat 822940 822980 73 + . . scaffold733 TRF Tandem_Repeat 823667 823734 136 + . . scaffold733 TRF Tandem_Repeat 827765 828545 1395 + . . scaffold733 TRF Tandem_Repeat 853999 854037 78 + . . scaffold733 TRF Tandem_Repeat 854304 854371 91 + . . scaffold733 TRF Tandem_Repeat 854304 854371 91 + . . scaffold733 TRF Tandem_Repeat 854304 854371 91 + . . scaffold733 TRF Tandem_Repeat 854304 854370 72 + . . scaffold733 TRF Tandem_Repeat 855012 855046 52 + . . scaffold733 TRF Tandem_Repeat 855309 855356 78 + . . scaffold733 GLEAN mRNA 859158 861922 0.997899 - . ID=CGI_10025892; scaffold733 GLEAN promoter 861923 862922 0.997899 - . ID=CGI_10025892; scaffold733 GLEAN promoter 863535 864534 0.998838 + . ID=CGI_10025893; scaffold733 GLEAN mRNA 864535 893177 0.998838 + . ID=CGI_10025893; scaffold733 TRF Tandem_Repeat 882271 882313 86 + . . scaffold733 WUBlastX LINE_L1-Tx1 888740 889537 50 - . . scaffold733 WUBlastX LINE_L1-Tx1 888875 889522 68 - . . scaffold733 WUBlastX LINE_L1-Tx1 888887 889363 107 - . . scaffold733 WUBlastX LINE_L1-Tx1 889524 889736 31 - . . scaffold733 WUBlastX LINE_L1 889801 890205 98 - . . scaffold733 WUBlastX LINE_L1-Tx1 889816 890124 190 - . . scaffold733 TRF Tandem_Repeat 890222 891014 1146 + . . scaffold733 WUBlastX LINE_L1 891211 891777 74 - . . scaffold733 WUBlastX LINE_L1 891259 891732 140 - . . scaffold733 TRF Tandem_Repeat 892291 892952 909 + . . scaffold733 TRF Tandem_Repeat 892957 892991 52 + . . scaffold733 WUBlastX LINE_L1-Tx1 894540 895085 128 + . . scaffold733 WUBlastX LINE_L1-Tx1 894552 894854 143 + . . scaffold733 GLEAN mRNA 898136 929166 0.513726 - . ID=CGI_10025894; scaffold733 WUBlastX LINE_CR1 913418 913573 23 - . . scaffold733 GLEAN promoter 929167 930166 0.513726 - . ID=CGI_10025894; scaffold733 TRF Tandem_Repeat 938378 939115 549 + . . scaffold733 TRF Tandem_Repeat 938443 939115 425 + . . scaffold733 TRF Tandem_Repeat 954330 954377 89 + . . scaffold733 GLEAN promoter 958200 959199 0.612819 + . ID=CGI_10025895; scaffold733 GLEAN mRNA 959200 960021 0.612819 + . ID=CGI_10025895; scaffold733 TRF Tandem_Repeat 963898 963978 63 + . . scaffold733 TRF Tandem_Repeat 964411 964517 187 + . . scaffold733 TRF Tandem_Repeat 965364 965395 64 + . . scaffold733 TRF Tandem_Repeat 966171 966229 118 + . . scaffold733 GLEAN mRNA 969916 970291 0.981337 - . ID=CGI_10025896; scaffold733 GLEAN promoter 970190 971189 1 + . ID=CGI_10025897; scaffold733 GLEAN promoter 970292 971291 0.981337 - . ID=CGI_10025896; scaffold733 GLEAN mRNA 971190 972698 1 + . ID=CGI_10025897; scaffold733 TRF Tandem_Repeat 976979 977134 174 + . . scaffold733 GLEAN mRNA 978262 1000628 0.999077 - . ID=CGI_10025898; scaffold733 GLEAN promoter 1000629 1001628 0.999077 - . ID=CGI_10025898; scaffold733 GLEAN promoter 1001722 1002721 0.999091 + . ID=CGI_10025899; scaffold733 GLEAN mRNA 1002722 1004904 0.999091 + . ID=CGI_10025899; scaffold733 GLEAN promoter 1009932 1010931 1 + . ID=CGI_10025900; scaffold733 GLEAN mRNA 1010932 1011738 1 + . ID=CGI_10025900; scaffold733 TRF Tandem_Repeat 1011883 1012214 195 + . . scaffold733 WUBlastX LINE_L1 1012635 1012691 21 + . . scaffold733 WUBlastX LINE_RTE-BovB 1012653 1012772 20 + . . scaffold733 WUBlastX LINE_L2 1012990 1014099 62 + . . scaffold733 WUBlastX LINE_RTE-BovB 1013170 1014429 1034 + . . scaffold733 GLEAN promoter 1016652 1017651 0.995936 + . ID=CGI_10025901; scaffold733 GLEAN mRNA 1017652 1019905 0.995936 + . ID=CGI_10025901; scaffold733 WUBlastX LTR_Gypsy 1017757 1018191 26 + . . scaffold733 WUBlastX LTR_Gypsy 1017931 1018638 43 + . . scaffold733 WUBlastX LTR_Gypsy 1018219 1018812 41 + . . scaffold733 WUBlastX LTR_Gypsy 1019835 1020005 22 + . . scaffold733 WUBlastX LTR_Gypsy 1020370 1020414 26 + . . scaffold733 WUBlastX LTR_ERV1 1020507 1021430 187 + . . scaffold733 WUBlastX LTR_Gypsy 1020675 1021475 245 + . . scaffold733 WUBlastX LTR_Copia 1021470 1021565 22 + . . scaffold733 WUBlastX LTR_Gypsy 1022364 1022414 22 + . . scaffold733 GLEAN mRNA 1025358 1025870 0.995026 - . ID=CGI_10025902; scaffold733 GLEAN promoter 1025871 1026870 0.995026 - . ID=CGI_10025902; scaffold733 TRF Tandem_Repeat 1031025 1031123 74 + . . scaffold733 GLEAN promoter 1048431 1049430 0.944358 + . ID=CGI_10025903; scaffold733 GLEAN mRNA 1049431 1053696 0.944358 + . ID=CGI_10025903; scaffold733 TRF Tandem_Repeat 1061525 1061580 58 + . . scaffold733 GLEAN mRNA 1066356 1076176 0.985844 - . ID=CGI_10025904; scaffold733 TRF Tandem_Repeat 1070353 1070408 67 + . . scaffold733 TRF Tandem_Repeat 1073313 1073356 88 + . . scaffold733 GLEAN promoter 1076177 1077176 0.985844 - . ID=CGI_10025904; scaffold733 TRF Tandem_Repeat 1078708 1078755 96 + . . scaffold733 GLEAN promoter 1093381 1094380 0.759892 + . ID=CGI_10025905; scaffold733 GLEAN mRNA 1094381 1100145 0.759892 + . ID=CGI_10025905; scaffold733 TRF Tandem_Repeat 1104301 1104533 303 + . . scaffold733 TRF Tandem_Repeat 1105383 1105572 235 + . . scaffold733 GLEAN mRNA 1107590 1110878 0.501787 - . ID=CGI_10025906; scaffold733 GLEAN promoter 1110879 1111331 0.501787 - . ID=CGI_10025906; scaffold734 TRF Tandem_Repeat 859 896 76 + . . scaffold734 GLEAN promoter 8461 9460 1 + . ID=CGI_10003360; scaffold734 GLEAN mRNA 9461 12878 1 + . ID=CGI_10003360; scaffold734 GLEAN mRNA 15567 24465 0.477862 - . ID=CGI_10003361; scaffold734 WUBlastX LINE_L2 20076 20975 28 - . . scaffold734 WUBlastX LINE_L2 20145 20786 252 - . . scaffold734 WUBlastX LINE_CR1 20565 20867 87 - . . scaffold734 WUBlastX LINE_L2 21284 21394 21 - . . scaffold734 GLEAN promoter 24466 25465 0.477862 - . ID=CGI_10003361; scaffold734 TRF Tandem_Repeat 28356 28407 95 + . . scaffold734 GLEAN mRNA 32036 36418 0.449006 - . ID=CGI_10003362; scaffold734 TRF Tandem_Repeat 33398 33424 54 + . . scaffold734 TRF Tandem_Repeat 33502 33560 118 + . . scaffold734 GLEAN promoter 36419 37418 0.449006 - . ID=CGI_10003362; scaffold734 TRF Tandem_Repeat 44635 44971 170 + . . scaffold734 TRF Tandem_Repeat 44637 44971 196 + . . scaffold734 TRF Tandem_Repeat 46035 46159 141 + . . scaffold734 TRF Tandem_Repeat 46035 46389 86 + . . scaffold734 TRF Tandem_Repeat 46181 46323 143 + . . scaffold734 TRF Tandem_Repeat 61564 61599 54 + . . scaffold734 GLEAN promoter 66923 67922 1 + . ID=CGI_10003363; scaffold734 TRF Tandem_Repeat 67432 67484 90 + . . scaffold734 GLEAN mRNA 67923 70462 1 + . ID=CGI_10003363; scaffold735 TRF Tandem_Repeat 6273 6324 104 + . . scaffold735 TRF Tandem_Repeat 13913 13967 110 + . . scaffold735 WUBlastX DNA_MuDR 17514 17771 56 + . . scaffold735 TRF Tandem_Repeat 27227 27308 164 + . . scaffold735 TRF Tandem_Repeat 35700 35744 81 + . . scaffold735 TRF Tandem_Repeat 37192 37245 81 + . . scaffold735 TRF Tandem_Repeat 61800 61831 55 + . . scaffold736 GLEAN mRNA 5304 8650 0.887504 - . ID=CGI_10004596; scaffold736 GLEAN promoter 7878 8877 0.999129 + . ID=CGI_10004597; scaffold736 GLEAN promoter 8651 9650 0.887504 - . ID=CGI_10004596; scaffold736 GLEAN mRNA 8878 14143 0.999129 + . ID=CGI_10004597; scaffold736 TRF Tandem_Repeat 40623 40673 75 + . . scaffold736 TRF Tandem_Repeat 42274 42300 54 + . . scaffold736 WUBlastX LTR_Copia 44522 44551 20 - . . scaffold736 WUBlastX LTR_Gypsy 44791 45660 270 - . . scaffold736 WUBlastX LTR_Gypsy 44956 45651 420 - . . scaffold736 WUBlastX LTR_Gypsy 45618 46226 84 - . . scaffold736 WUBlastX LTR_Gypsy 45621 46097 302 - . . scaffold736 WUBlastX LTR_Gypsy 46220 46693 90 - . . scaffold736 WUBlastX LTR_Gypsy 46298 46696 220 - . . scaffold736 WUBlastX LTR_Gypsy 46698 47057 192 - . . scaffold736 WUBlastX LTR_Gypsy 46930 47328 211 - . . scaffold736 WUBlastX LTR_Gypsy 46966 47478 107 - . . scaffold736 WUBlastX LTR_Gypsy 46990 47298 219 - . . scaffold736 TRF Tandem_Repeat 47869 47923 101 + . . scaffold736 TRF Tandem_Repeat 49259 49323 103 + . . scaffold736 WUBlastX LTR_Gypsy 49539 49730 157 - . . scaffold736 WUBlastX LTR_Gypsy 49545 49769 154 - . . scaffold736 WUBlastX LTR_Gypsy 49545 49820 120 - . . scaffold736 WUBlastX LTR_Gypsy 49548 49895 118 - . . scaffold736 WUBlastX LTR_Caulimoviru 49737 50012 23 - . . scaffold736 TRF Tandem_Repeat 52211 52349 116 + . . scaffold736 TRF Tandem_Repeat 52580 52666 95 + . . scaffold736 GLEAN promoter 63195 64194 0.980917 + . ID=CGI_10004598; scaffold736 GLEAN mRNA 64195 73888 0.980917 + . ID=CGI_10004598; scaffold736 TRF Tandem_Repeat 68510 68550 82 + . . scaffold736 GLEAN mRNA 77478 84874 0.99909 - . ID=CGI_10004599; scaffold736 WUBlastX LTR_Gypsy 83406 83561 64 - . . scaffold736 GLEAN promoter 84875 85874 0.99909 - . ID=CGI_10004599; scaffold736 GLEAN promoter 85446 86445 0.935879 + . ID=CGI_10004600; scaffold736 GLEAN mRNA 86446 98295 0.935879 + . ID=CGI_10004600; scaffold736 TRF Tandem_Repeat 87481 87530 66 + . . scaffold736 TRF Tandem_Repeat 87481 87530 75 + . . scaffold736 TRF Tandem_Repeat 101164 101251 115 + . . scaffold737 WUBlastX LINE_RTE-X 3335 3679 57 - . . scaffold737 WUBlastX LINE_RTE-X 3338 3610 93 - . . scaffold737 WUBlastX LINE_L2 8983 9801 157 + . . scaffold737 WUBlastX LINE_CR1-L2 9217 9771 208 + . . scaffold737 WUBlastX LINE_L2 13354 14274 700 - . . scaffold737 WUBlastX LINE_L2 13363 14442 298 - . . scaffold737 WUBlastX LINE_CR1-L2 14307 14504 64 + . . scaffold737 WUBlastX LINE_L2 15012 15059 21 - . . scaffold737 GLEAN promoter 16664 17663 0.998703 + . ID=CGI_10014301; scaffold737 GLEAN mRNA 17664 21651 0.998703 + . ID=CGI_10014301; scaffold737 TRF Tandem_Repeat 19409 19541 232 + . . scaffold737 GLEAN mRNA 22509 35070 0.706957 - . ID=CGI_10014302; scaffold737 GLEAN promoter 35071 36070 0.706957 - . ID=CGI_10014302; scaffold737 GLEAN promoter 37277 38276 1 + . ID=CGI_10014303; scaffold737 GLEAN mRNA 38277 39871 1 + . ID=CGI_10014303; scaffold737 GLEAN promoter 39931 40930 0.999676 + . ID=CGI_10014304; scaffold737 GLEAN mRNA 40931 53148 0.999676 + . ID=CGI_10014304; scaffold737 TRF Tandem_Repeat 42065 42100 72 + . . scaffold737 GLEAN mRNA 48291 72372 0.370581 - . ID=CGI_10014305; scaffold737 TRF Tandem_Repeat 55179 55216 76 + . . scaffold737 TRF Tandem_Repeat 59265 59297 57 + . . scaffold737 GLEAN promoter 72373 73372 0.370581 - . ID=CGI_10014305; scaffold737 TRF Tandem_Repeat 74577 74631 110 + . . scaffold737 TRF Tandem_Repeat 75535 75614 160 + . . scaffold737 TRF Tandem_Repeat 75793 75819 54 + . . scaffold737 WUBlastX LINE_L2 76366 76779 95 + . . scaffold737 WUBlastX LINE_L2 76649 77110 179 + . . scaffold737 WUBlastX LINE_L2 76775 77089 214 + . . scaffold737 WUBlastX LINE_L2 76778 77191 69 + . . scaffold737 WUBlastX LINE_L2 77710 78135 47 + . . scaffold737 WUBlastX LINE_CR1 77788 78162 72 + . . scaffold737 WUBlastX LINE_L2 77899 78198 134 + . . scaffold737 WUBlastX LINE_L2 77908 78375 38 + . . scaffold737 WUBlastX LINE_L2 77908 78291 57 + . . scaffold737 WUBlastX LINE_L2 77911 78162 140 + . . scaffold737 GLEAN mRNA 85481 86431 0.999637 - . ID=CGI_10014306; scaffold737 GLEAN promoter 86432 87431 0.999637 - . ID=CGI_10014306; scaffold737 WUBlastX RC_Helitron 91765 91842 21 + . . scaffold737 WUBlastX LINE_CR1-L2 92027 92074 25 + . . scaffold737 WUBlastX LINE_L2 92328 92417 24 + . . scaffold737 WUBlastX LINE_CR1 92352 92387 25 + . . scaffold737 WUBlastX LINE_L2 92463 92636 30 + . . scaffold737 WUBlastX LINE_L2 92603 93094 136 + . . scaffold737 WUBlastX LINE_L2 92633 93028 249 + . . scaffold737 WUBlastX LINE_L2 92657 93175 103 + . . scaffold737 WUBlastX LINE_CR1 93202 93300 22 + . . scaffold737 WUBlastX LINE_I 94826 95164 26 + . . scaffold737 WUBlastX LINE_L2 94886 95731 365 + . . scaffold737 GLEAN promoter 97023 98022 0.99998 + . ID=CGI_10014307; scaffold737 GLEAN mRNA 98023 99603 0.99998 + . ID=CGI_10014307; scaffold737 GLEAN promoter 106414 107413 0.999015 + . ID=CGI_10014308; scaffold737 GLEAN mRNA 107414 109861 0.999015 + . ID=CGI_10014308; scaffold737 TRF Tandem_Repeat 116813 116862 66 + . . scaffold737 GLEAN mRNA 117310 120223 0.417285 - . ID=CGI_10014309; scaffold737 GLEAN promoter 120224 121223 0.417285 - . ID=CGI_10014309; scaffold737 GLEAN mRNA 121163 138575 0.525071 - . ID=CGI_10014310; scaffold737 TRF Tandem_Repeat 131308 131351 88 + . . scaffold737 TRF Tandem_Repeat 135115 135153 78 + . . scaffold737 GLEAN promoter 138576 139575 0.525071 - . ID=CGI_10014310; scaffold737 TRF Tandem_Repeat 147333 147418 163 + . . scaffold737 GLEAN mRNA 149869 152316 0.991078 - . ID=CGI_10014311; scaffold737 GLEAN promoter 152317 153316 0.991078 - . ID=CGI_10014311; scaffold737 TRF Tandem_Repeat 157800 157884 89 + . . scaffold737 WUBlastX LINE_RTE-X 159377 159739 71 - . . scaffold737 WUBlastX LINE_RTE-X 159506 159775 100 - . . scaffold737 GLEAN promoter 164145 165144 0.404866 + . ID=CGI_10014312; scaffold737 GLEAN mRNA 165145 192444 0.404866 + . ID=CGI_10014312; scaffold737 GLEAN promoter 191754 192753 0.624577 + . ID=CGI_10014313; scaffold737 GLEAN mRNA 192754 194769 0.624577 + . ID=CGI_10014313; scaffold737 TRF Tandem_Repeat 193209 193392 191 + . . scaffold737 TRF Tandem_Repeat 206918 206964 94 + . . scaffold737 GLEAN mRNA 207639 239787 0.997526 - . ID=CGI_10014314; scaffold737 TRF Tandem_Repeat 212471 212524 108 + . . scaffold737 TRF Tandem_Repeat 221514 221572 102 + . . scaffold737 TRF Tandem_Repeat 224184 224254 126 + . . scaffold737 GLEAN promoter 239788 240787 0.997526 - . ID=CGI_10014314; scaffold737 TRF Tandem_Repeat 245626 245663 76 + . . scaffold737 TRF Tandem_Repeat 256163 256209 94 + . . scaffold737 TRF Tandem_Repeat 264182 264303 181 + . . scaffold737 GLEAN promoter 270275 271274 0.998432 + . ID=CGI_10014315; scaffold737 GLEAN mRNA 271275 271559 0.998432 + . ID=CGI_10014315; scaffold737 GLEAN promoter 273277 274276 0.998432 + . ID=CGI_10014316; scaffold737 GLEAN mRNA 274277 289630 0.998432 + . ID=CGI_10014316; scaffold737 TRF Tandem_Repeat 282375 282407 66 + . . scaffold737 GLEAN mRNA 290958 298439 0.807998 - . ID=CGI_10014317; scaffold737 WUBlastX LINE_L1-Tx1 294014 294955 142 - . . scaffold737 WUBlastX LINE_L1 294767 295024 35 - . . scaffold737 GLEAN promoter 298440 299439 0.807998 - . ID=CGI_10014317; scaffold737 GLEAN mRNA 299636 310567 0.999871 - . ID=CGI_10014318; scaffold737 TRF Tandem_Repeat 305595 305631 74 + . . scaffold737 GLEAN promoter 310568 311567 0.999871 - . ID=CGI_10014318; scaffold737 TRF Tandem_Repeat 318639 318679 82 + . . scaffold737 TRF Tandem_Repeat 322400 322432 66 + . . scaffold737 GLEAN promoter 330288 331287 0.992082 + . ID=CGI_10014319; scaffold737 GLEAN mRNA 331288 358902 0.992082 + . ID=CGI_10014319; scaffold737 TRF Tandem_Repeat 335408 335449 84 + . . scaffold737 TRF Tandem_Repeat 353596 354087 496 + . . scaffold737 TRF Tandem_Repeat 353596 354087 442 + . . scaffold737 TRF Tandem_Repeat 353887 353990 73 + . . scaffold737 TRF Tandem_Repeat 355965 356119 129 + . . scaffold737 TRF Tandem_Repeat 363552 363593 84 + . . scaffold737 TRF Tandem_Repeat 363953 364008 112 + . . scaffold737 TRF Tandem_Repeat 364136 364176 82 + . . scaffold737 GLEAN mRNA 364589 387017 0.962357 - . ID=CGI_10014320; scaffold737 TRF Tandem_Repeat 366368 366470 188 + . . scaffold737 TRF Tandem_Repeat 368800 369241 679 + . . scaffold737 TRF Tandem_Repeat 376721 376752 64 + . . scaffold737 GLEAN promoter 385877 386876 1 + . ID=CGI_10014321; scaffold737 GLEAN mRNA 386877 389479 1 + . ID=CGI_10014321; scaffold737 GLEAN promoter 387018 388017 0.962357 - . ID=CGI_10014320; scaffold737 TRF Tandem_Repeat 389243 389296 108 + . . scaffold737 TRF Tandem_Repeat 390112 390369 453 + . . scaffold738 GLEAN promoter 336 1335 1 + . ID=CGI_10000540; scaffold738 GLEAN mRNA 1336 4448 1 + . ID=CGI_10000540; scaffold738 WUBlastX DNA_hAT-Tip100 1818 2153 63 + . . scaffold738 WUBlastX DNA_hAT-Tip100 1902 2183 98 + . . scaffold738 WUBlastX DNA_hAT-Tip100 1929 2162 107 + . . scaffold738 WUBlastX DNA_hAT-Tip100 1935 2261 45 + . . scaffold739 TRF Tandem_Repeat 9588 9774 148 + . . scaffold739 GLEAN promoter 10356 11355 0.92595 + . ID=CGI_10004171; scaffold739 GLEAN mRNA 11356 25802 0.92595 + . ID=CGI_10004171; scaffold739 TRF Tandem_Repeat 35951 36037 86 + . . scaffold739 TRF Tandem_Repeat 35968 36025 55 + . . scaffold739 TRF Tandem_Repeat 36551 36605 110 + . . scaffold739 TRF Tandem_Repeat 37644 37694 93 + . . scaffold739 TRF Tandem_Repeat 38908 38998 73 + . . scaffold739 WUBlastX LTR_Pao 39012 39230 96 - . . scaffold739 WUBlastX LTR_Pao 39262 39720 240 - . . scaffold739 WUBlastX LTR_Pao 39262 39993 145 - . . scaffold739 WUBlastX LTR_Pao 39837 40049 84 - . . scaffold739 GLEAN promoter 40763 41762 0.999957 + . ID=CGI_10004172; scaffold739 TRF Tandem_Repeat 40934 40990 53 + . . scaffold739 GLEAN mRNA 41763 50736 0.999957 + . ID=CGI_10004172; scaffold739 TRF Tandem_Repeat 54187 54233 67 + . . scaffold739 TRF Tandem_Repeat 63256 63290 54 + . . scaffold739 WUBlastX DNA_TcMar-Tc1 81567 81791 27 + . . scaffold739 WUBlastX DNA_TcMar-Tc1 81609 82175 156 + . . scaffold739 WUBlastX DNA_TcMar-Tc1 82005 82223 86 + . . scaffold739 WUBlastX DNA_TcMar-Tc1 82223 82453 114 + . . scaffold739 WUBlastX DNA_TcMar-Tc1 91390 92169 125 + . . scaffold739 WUBlastX DNA_TcMar-Tc1 91655 92371 80 + . . scaffold739 WUBlastX DNA_TcMar-Tc1 91858 92190 135 + . . scaffold74 GLEAN promoter 1 762 0.999942 + . ID=CGI_10001482; scaffold74 GLEAN mRNA 763 19791 0.999942 + . ID=CGI_10001482; scaffold74 GLEAN mRNA 22091 23733 1 - . ID=CGI_10001483; scaffold74 GLEAN promoter 23734 24124 1 - . ID=CGI_10001483; scaffold740 GLEAN promoter 1 108 0.666945 + . ID=CGI_10000643; scaffold740 GLEAN mRNA 109 2125 0.666945 + . ID=CGI_10000643; scaffold743 GLEAN promoter 1 512 1 + . ID=CGI_10008608; scaffold743 GLEAN mRNA 513 2181 1 + . ID=CGI_10008608; scaffold743 TRF Tandem_Repeat 1219 1539 459 + . . scaffold743 TRF Tandem_Repeat 1219 1546 452 + . . scaffold743 TRF Tandem_Repeat 1525 1723 170 + . . scaffold743 TRF Tandem_Repeat 3374 3413 80 + . . scaffold743 GLEAN mRNA 3942 16415 0.988021 - . ID=CGI_10008609; scaffold743 TRF Tandem_Repeat 7808 7937 224 + . . scaffold743 TRF Tandem_Repeat 7938 8476 981 + . . scaffold743 TRF Tandem_Repeat 8320 9764 2777 + . . scaffold743 TRF Tandem_Repeat 8477 8637 268 + . . scaffold743 TRF Tandem_Repeat 8638 8798 277 + . . scaffold743 TRF Tandem_Repeat 8799 8959 277 + . . scaffold743 TRF Tandem_Repeat 8960 9120 277 + . . scaffold743 TRF Tandem_Repeat 9121 9281 277 + . . scaffold743 TRF Tandem_Repeat 9282 9442 277 + . . scaffold743 TRF Tandem_Repeat 9443 9603 277 + . . scaffold743 TRF Tandem_Repeat 9604 9774 301 + . . scaffold743 TRF Tandem_Repeat 16095 16141 94 + . . scaffold743 GLEAN promoter 16416 17415 0.988021 - . ID=CGI_10008609; scaffold743 GLEAN promoter 16566 17565 0.50162 + . ID=CGI_10008610; scaffold743 TRF Tandem_Repeat 16956 17022 134 + . . scaffold743 GLEAN mRNA 17566 30186 0.50162 + . ID=CGI_10008610; scaffold743 TRF Tandem_Repeat 19208 19276 129 + . . scaffold743 TRF Tandem_Repeat 26701 26730 60 + . . scaffold743 TRF Tandem_Repeat 26768 26825 116 + . . scaffold743 GLEAN mRNA 36417 37646 0.984519 - . ID=CGI_10008611; scaffold743 GLEAN promoter 37647 38646 0.984519 - . ID=CGI_10008611; scaffold743 GLEAN mRNA 43026 49437 0.964325 - . ID=CGI_10008612; scaffold743 GLEAN promoter 49438 50437 0.964325 - . ID=CGI_10008612; scaffold743 TRF Tandem_Repeat 59086 59127 66 + . . scaffold743 GLEAN mRNA 78257 83384 0.999676 - . ID=CGI_10008613; scaffold743 GLEAN promoter 82791 83790 0.449406 + . ID=CGI_10008614; scaffold743 GLEAN promoter 83385 84384 0.999676 - . ID=CGI_10008613; scaffold743 GLEAN mRNA 83791 109134 0.449406 + . ID=CGI_10008614; scaffold743 TRF Tandem_Repeat 98319 98529 298 + . . scaffold743 WUBlastX LINE_RTE-X 106816 107253 126 - . . scaffold743 WUBlastX LINE_RTE-X 107204 107767 69 - . . scaffold743 WUBlastX LINE_RTE-X 107342 107767 221 - . . scaffold743 WUBlastX LINE_RTE-X 107775 108152 203 - . . scaffold743 WUBlastX LINE_RTE-X 107835 108218 87 - . . scaffold743 WUBlastX LINE_RTE-X 108211 108702 351 - . . scaffold743 WUBlastX LINE_Tad1? 108226 108909 66 - . . scaffold743 WUBlastX LINE_RTE-X 108840 108926 63 + . . scaffold743 WUBlastX LINE_RTE-BovB 108867 108947 25 + . . scaffold743 WUBlastX LINE_RTE-X 108940 110628 304 + . . scaffold743 WUBlastX LINE_RTE-X 108946 110001 484 + . . scaffold743 WUBlastX LINE_RTE-X 110392 110721 121 + . . scaffold743 WUBlastX LINE_RTE-X 110909 111241 25 - . . scaffold743 WUBlastX LINE_RTE-X 110975 111241 53 - . . scaffold743 WUBlastX LINE_RTE-X 111235 111816 100 - . . scaffold743 WUBlastX LINE_RTE-X 111328 111813 155 - . . scaffold743 WUBlastX LINE_CR1 111370 112017 55 - . . scaffold743 WUBlastX LINE_L1-Tx1 112001 112348 150 - . . scaffold743 WUBlastX LINE_L1 112010 112615 118 - . . scaffold743 WUBlastX DNA_Harbinger 135674 135712 27 - . . scaffold743 WUBlastX DNA_Harbinger 135710 135757 30 - . . scaffold743 WUBlastX DNA_Harbinger 135771 136721 578 - . . scaffold743 TRF Tandem_Repeat 144856 144913 116 + . . scaffold743 TRF Tandem_Repeat 147948 148001 99 + . . scaffold743 TRF Tandem_Repeat 150107 150132 52 + . . scaffold743 TRF Tandem_Repeat 150333 150420 176 + . . scaffold743 TRF Tandem_Repeat 152680 152746 71 + . . scaffold743 TRF Tandem_Repeat 160825 160911 156 + . . scaffold743 GLEAN mRNA 179233 180111 1 - . ID=CGI_10008615; scaffold743 GLEAN promoter 180112 181111 1 - . ID=CGI_10008615; scaffold743 GLEAN mRNA 190625 210773 0.715666 - . ID=CGI_10008616; scaffold743 WUBlastX DNA_Harbinger 208832 209416 302 + . . scaffold743 WUBlastX DNA_Harbinger 209430 209765 85 + . . scaffold743 WUBlastX DNA_Harbinger 210546 210758 81 - . . scaffold743 GLEAN promoter 210774 211773 0.715666 - . ID=CGI_10008616; scaffold744 GLEAN mRNA 1836 8489 0.999985 - . ID=CGI_10000852; scaffold744 GLEAN promoter 8490 9489 0.999985 - . ID=CGI_10000852; scaffold744 GLEAN mRNA 9051 9266 0.999372 - . ID=CGI_10000853; scaffold744 GLEAN promoter 9267 10266 0.999372 - . ID=CGI_10000853; scaffold746 WUBlastX LINE_L2 1281 1652 73 + . . scaffold746 TRF Tandem_Repeat 9249 9592 226 + . . scaffold746 TRF Tandem_Repeat 10322 10436 212 + . . scaffold747 TRF Tandem_Repeat 2095 2654 814 + . . scaffold747 WUBlastX LINE_RTE-X 5048 5422 35 - . . scaffold747 WUBlastX LINE_RTE-X 5078 5329 41 - . . scaffold747 WUBlastX LINE_RTE-X 5087 5269 52 - . . scaffold747 TRF Tandem_Repeat 7117 7144 56 + . . scaffold747 GLEAN promoter 7284 8283 1 + . ID=CGI_10017058; scaffold747 GLEAN mRNA 8284 19169 1 + . ID=CGI_10017058; scaffold747 GLEAN promoter 27171 28170 0.531581 + . ID=CGI_10017059; scaffold747 GLEAN mRNA 28171 29517 0.531581 + . ID=CGI_10017059; scaffold747 WUBlastX LINE_RTE-X 31698 31901 54 + . . scaffold747 WUBlastX LINE_RTE-X 31767 31868 71 + . . scaffold747 WUBlastX LINE_RTE-X 31767 32180 49 + . . scaffold747 WUBlastX LINE_RTE-X 32185 32241 31 + . . scaffold747 WUBlastX LINE_RTE-X 32185 32280 24 + . . scaffold747 WUBlastX LINE_RTE-X 32206 32328 21 + . . scaffold747 WUBlastX LINE_RTE-X 32937 33272 28 + . . scaffold747 WUBlastX LINE_RTE-X 33057 33404 46 + . . scaffold747 WUBlastX LINE_RTE-X 33063 33272 59 + . . scaffold747 WUBlastX LINE_L1-Tx1 33777 35078 294 + . . scaffold747 TRF Tandem_Repeat 35223 35261 78 + . . scaffold747 GLEAN mRNA 84710 97923 0.627527 - . ID=CGI_10017060; scaffold747 TRF Tandem_Repeat 93087 93125 69 + . . scaffold747 GLEAN promoter 97924 98923 0.627527 - . ID=CGI_10017060; scaffold747 TRF Tandem_Repeat 99574 99694 188 + . . scaffold747 TRF Tandem_Repeat 100122 100183 124 + . . scaffold747 TRF Tandem_Repeat 101282 101313 64 + . . scaffold747 GLEAN mRNA 103240 104847 1 - . ID=CGI_10017061; scaffold747 GLEAN promoter 104848 105847 1 - . ID=CGI_10017061; scaffold747 GLEAN mRNA 129961 161540 0.979156 - . ID=CGI_10017062; scaffold747 TRF Tandem_Repeat 133004 133278 451 + . . scaffold747 TRF Tandem_Repeat 134028 135006 1461 + . . scaffold747 TRF Tandem_Repeat 150356 150446 146 + . . scaffold747 TRF Tandem_Repeat 150412 150501 90 + . . scaffold747 TRF Tandem_Repeat 152125 152231 124 + . . scaffold747 GLEAN promoter 161541 162540 0.979156 - . ID=CGI_10017062; scaffold747 WUBlastX LINE_RTE-X 166448 166627 21 - . . scaffold747 GLEAN promoter 167254 168253 0.615611 + . ID=CGI_10017063; scaffold747 GLEAN mRNA 168254 169882 0.615611 + . ID=CGI_10017063; scaffold747 TRF Tandem_Repeat 171847 171894 96 + . . scaffold747 WUBlastX DNA_TcMar-Marin 184643 185095 123 + . . scaffold747 WUBlastX DNA_TcMar-Marin 185094 185267 70 + . . scaffold747 WUBlastX DNA_TcMar-Marin 185524 185844 129 + . . scaffold747 WUBlastX DNA_TcMar-Marin 185581 185847 153 + . . scaffold747 TRF Tandem_Repeat 187219 187352 144 + . . scaffold747 TRF Tandem_Repeat 189736 189849 106 + . . scaffold747 TRF Tandem_Repeat 189765 190080 460 + . . scaffold747 TRF Tandem_Repeat 189783 190024 88 + . . scaffold747 TRF Tandem_Repeat 192120 192206 165 + . . scaffold747 TRF Tandem_Repeat 193267 193310 56 + . . scaffold747 TRF Tandem_Repeat 199347 199412 132 + . . scaffold747 TRF Tandem_Repeat 202169 202193 50 + . . scaffold747 TRF Tandem_Repeat 214550 214593 88 + . . scaffold747 TRF Tandem_Repeat 215026 215194 281 + . . scaffold747 WUBlastX LINE_L2 218412 218729 55 + . . scaffold747 TRF Tandem_Repeat 221140 221303 240 + . . scaffold747 WUBlastX LINE_RTE-X 224232 224411 41 + . . scaffold747 WUBlastX LINE_RTE-X 228433 229152 133 + . . scaffold747 WUBlastX LINE_RTE-X 228658 229152 140 + . . scaffold747 WUBlastX LINE_RTE-X 229206 229781 114 + . . scaffold747 WUBlastX LINE_RTE-X 229221 229661 135 + . . scaffold747 WUBlastX LINE_RTE-X 230163 230231 20 + . . scaffold747 WUBlastX LINE_RTE-X 230354 230929 114 + . . scaffold747 WUBlastX LINE_RTE-X 230369 230809 135 + . . scaffold747 GLEAN promoter 236426 237425 0.983402 + . ID=CGI_10017064; scaffold747 GLEAN mRNA 237426 244270 0.983402 + . ID=CGI_10017064; scaffold747 GLEAN promoter 244809 245808 0.702355 + . ID=CGI_10017065; scaffold747 GLEAN mRNA 245809 250004 0.702355 + . ID=CGI_10017065; scaffold747 TRF Tandem_Repeat 252428 252712 132 + . . scaffold747 GLEAN promoter 254990 255989 1 + . ID=CGI_10017067; scaffold747 GLEAN mRNA 255485 257870 1 - . ID=CGI_10017066; scaffold747 GLEAN mRNA 255990 260698 1 + . ID=CGI_10017067; scaffold747 GLEAN promoter 257871 258870 1 - . ID=CGI_10017066; scaffold747 GLEAN mRNA 263394 265923 0.999676 - . ID=CGI_10017068; scaffold747 GLEAN promoter 265924 266923 0.999676 - . ID=CGI_10017068; scaffold747 TRF Tandem_Repeat 266207 266263 114 + . . scaffold747 TRF Tandem_Repeat 266415 266609 234 + . . scaffold747 GLEAN promoter 270067 271066 0.999998 + . ID=CGI_10017069; scaffold747 GLEAN mRNA 271067 273481 0.999998 + . ID=CGI_10017069; scaffold747 GLEAN mRNA 274122 291064 0.760008 - . ID=CGI_10017070; scaffold747 GLEAN promoter 291065 292064 0.760008 - . ID=CGI_10017070; scaffold747 TRF Tandem_Repeat 293146 293215 140 + . . scaffold747 GLEAN promoter 294773 295772 1 + . ID=CGI_10017071; scaffold747 GLEAN mRNA 295773 304030 1 + . ID=CGI_10017071; scaffold747 TRF Tandem_Repeat 296006 296036 62 + . . scaffold747 GLEAN promoter 305038 306037 0.99992 + . ID=CGI_10017072; scaffold747 GLEAN mRNA 306038 310424 0.99992 + . ID=CGI_10017072; scaffold747 TRF Tandem_Repeat 310559 310596 76 + . . scaffold747 GLEAN promoter 312529 313528 0.469694 + . ID=CGI_10017073; scaffold747 GLEAN mRNA 313529 328721 0.469694 + . ID=CGI_10017073; scaffold747 TRF Tandem_Repeat 316170 316205 72 + . . scaffold747 TRF Tandem_Repeat 318916 318950 70 + . . scaffold747 TRF Tandem_Repeat 323871 324648 908 + . . scaffold747 GLEAN promoter 330489 331488 0.69447 + . ID=CGI_10017074; scaffold747 GLEAN mRNA 331489 332994 0.69447 + . ID=CGI_10017074; scaffold747 GLEAN mRNA 335107 348264 0.786118 - . ID=CGI_10017075; scaffold747 GLEAN promoter 348265 349264 0.786118 - . ID=CGI_10017075; scaffold747 WUBlastX LTR_Gypsy 349358 350413 59 + . . scaffold747 WUBlastX LTR_Gypsy 349952 350497 91 + . . scaffold747 WUBlastX LTR_Gypsy-Cigr 350162 350566 79 + . . scaffold747 TRF Tandem_Repeat 354606 354890 408 + . . scaffold747 TRF Tandem_Repeat 357537 357821 408 + . . scaffold747 GLEAN mRNA 367938 368147 0.999371 - . ID=CGI_10017076; scaffold747 GLEAN promoter 368148 369147 0.999371 - . ID=CGI_10017076; scaffold747 GLEAN mRNA 368194 369127 0.99779 - . ID=CGI_10017077; scaffold747 GLEAN promoter 369128 370127 0.99779 - . ID=CGI_10017077; scaffold747 TRF Tandem_Repeat 372018 372065 55 + . . scaffold747 TRF Tandem_Repeat 372021 372078 57 + . . scaffold747 WUBlastX DNA_Harbinger 372689 373312 320 + . . scaffold747 WUBlastX DNA_Sola 374697 374870 77 - . . scaffold747 TRF Tandem_Repeat 380785 381605 990 + . . scaffold747 WUBlastX LINE_L1-Tx1 382486 382974 127 + . . scaffold747 WUBlastX LINE_L1 382498 383091 24 + . . scaffold747 WUBlastX LINE_L1-Tx1 383381 383479 38 + . . scaffold747 WUBlastX LINE_L1-Tx1 383482 383940 135 + . . scaffold747 WUBlastX LTR_Gypsy 383982 384062 24 + . . scaffold747 WUBlastX LTR_Gypsy 384081 384137 20 + . . scaffold747 WUBlastX LTR_Gypsy 384540 384602 29 + . . scaffold747 WUBlastX LTR_Gypsy 384558 384614 30 + . . scaffold747 WUBlastX LTR_Gypsy 384730 384948 108 + . . scaffold747 WUBlastX LTR_Gypsy 384944 385351 114 + . . scaffold747 WUBlastX LTR_Gypsy 385052 386116 211 + . . scaffold747 WUBlastX LTR_Gypsy 386125 386361 46 + . . scaffold747 WUBlastX LTR_Gypsy 386364 386702 201 + . . scaffold747 WUBlastX LTR_Gypsy 386394 386768 45 + . . scaffold747 WUBlastX LTR_Gypsy 386917 387366 92 - . . scaffold747 WUBlastX LTR_Gypsy 386995 387534 231 - . . scaffold747 WUBlastX LTR_Gypsy 398195 398638 151 + . . scaffold747 WUBlastX LTR_Gypsy 398261 398632 163 + . . scaffold747 WUBlastX LTR_Gypsy-Cigr 398674 398808 51 + . . scaffold747 WUBlastX LTR_Gypsy 398680 398910 42 + . . scaffold747 WUBlastX LTR_Copia 398692 399048 41 + . . scaffold747 WUBlastX LTR_Gypsy 399027 399470 249 + . . scaffold747 WUBlastX LTR_Gypsy 399536 399799 66 + . . scaffold747 WUBlastX LTR_Gypsy 400849 402096 1039 + . . scaffold747 WUBlastX LTR_Gypsy-Cigr 402108 403010 577 + . . scaffold747 WUBlastX LTR_Gypsy 403016 404023 544 + . . scaffold747 GLEAN mRNA 408431 415910 0.881161 - . ID=CGI_10017078; scaffold747 TRF Tandem_Repeat 410841 411115 403 + . . scaffold747 TRF Tandem_Repeat 413633 413687 74 + . . scaffold747 GLEAN promoter 415911 416910 0.881161 - . ID=CGI_10017078; scaffold747 TRF Tandem_Repeat 428015 428068 99 + . . scaffold747 GLEAN promoter 448355 449354 1 + . ID=CGI_10017079; scaffold747 GLEAN mRNA 449355 454331 1 + . ID=CGI_10017079; scaffold747 GLEAN mRNA 461002 477096 0.999999 - . ID=CGI_10017080; scaffold747 TRF Tandem_Repeat 471049 471089 82 + . . scaffold747 GLEAN promoter 477097 478096 0.999999 - . ID=CGI_10017080; scaffold747 TRF Tandem_Repeat 482424 482464 82 + . . scaffold748 TRF Tandem_Repeat 3789 3832 52 + . . scaffold748 TRF Tandem_Repeat 7453 7502 100 + . . scaffold748 TRF Tandem_Repeat 9890 9943 65 + . . scaffold748 TRF Tandem_Repeat 9890 9943 74 + . . scaffold748 TRF Tandem_Repeat 10113 10825 793 + . . scaffold748 WUBlastX LTR_Pao 11775 11951 113 - . . scaffold748 WUBlastX LTR_Pao 11854 12444 183 - . . scaffold748 WUBlastX LTR_Pao 11971 12558 421 - . . scaffold748 WUBlastX LTR_Pao 12751 12819 21 - . . scaffold748 WUBlastX LTR_Pao 12957 13334 225 - . . scaffold748 WUBlastX LTR_Pao 13029 13406 298 - . . scaffold748 WUBlastX LTR_Pao 13029 13334 308 - . . scaffold748 WUBlastX LTR_Pao 13423 14046 218 - . . scaffold748 WUBlastX LTR_Pao 13573 14046 328 - . . scaffold748 WUBlastX LTR_Pao 13699 14172 119 - . . scaffold748 WUBlastX LTR_Pao 14143 14619 45 - . . scaffold748 WUBlastX LTR_Pao 14266 14844 393 - . . scaffold748 WUBlastX LTR_Pao 14757 15629 629 - . . scaffold748 WUBlastX LTR_Pao 15282 16280 625 - . . scaffold748 WUBlastX LTR_Pao 16403 17212 502 - . . scaffold748 WUBlastX LTR_Pao 16406 17767 457 - . . scaffold748 WUBlastX LTR_Pao 16406 18340 384 - . . scaffold748 GLEAN mRNA 17858 18358 0.999372 - . ID=CGI_10012638; scaffold748 GLEAN promoter 18359 19358 0.999372 - . ID=CGI_10012638; scaffold748 GLEAN promoter 22373 23372 0.99998 + . ID=CGI_10012639; scaffold748 TRF Tandem_Repeat 22423 22551 174 + . . scaffold748 WUBlastX RC_Helitron 22689 22844 38 + . . scaffold748 WUBlastX RC_Helitron 22805 23245 53 + . . scaffold748 WUBlastX RC_Helitron 22805 23329 40 + . . scaffold748 GLEAN mRNA 23373 23834 0.99998 + . ID=CGI_10012639; scaffold748 WUBlastX LINE_L1-Tx1 24116 25333 331 + . . scaffold748 WUBlastX LINE_RTE-X 25525 25662 23 + . . scaffold748 WUBlastX LINE_L1-Tx1 26117 26206 20 + . . scaffold748 WUBlastX LINE_L1 26245 26655 129 + . . scaffold748 WUBlastX LINE_L1-Tx1 26311 26709 307 + . . scaffold748 WUBlastX LINE_L1-Tx1 28226 28651 21 + . . scaffold748 WUBlastX LINE_L1-Tx1 28376 28690 23 + . . scaffold748 TRF Tandem_Repeat 28858 29186 191 + . . scaffold748 TRF Tandem_Repeat 30536 30562 54 + . . scaffold748 GLEAN mRNA 31389 36471 0.590995 - . ID=CGI_10012640; scaffold748 GLEAN promoter 36472 37471 0.590995 - . ID=CGI_10012640; scaffold748 TRF Tandem_Repeat 68953 68977 50 + . . scaffold748 GLEAN mRNA 75850 80344 0.581832 - . ID=CGI_10012641; scaffold748 GLEAN promoter 80345 81344 0.581832 - . ID=CGI_10012641; scaffold748 WUBlastX LINE_L2 107263 107616 48 + . . scaffold748 TRF Tandem_Repeat 129068 129500 473 + . . scaffold748 TRF Tandem_Repeat 133630 133662 57 + . . scaffold748 GLEAN promoter 140138 141137 1 + . ID=CGI_10012642; scaffold748 GLEAN mRNA 141138 144326 1 + . ID=CGI_10012642; scaffold748 TRF Tandem_Repeat 156147 156207 104 + . . scaffold748 GLEAN mRNA 165342 172077 0.999394 - . ID=CGI_10012643; scaffold748 WUBlastX DNA_IS4EU 169350 170786 832 - . . scaffold748 GLEAN promoter 172078 173077 0.999394 - . ID=CGI_10012643; scaffold748 GLEAN promoter 172606 173605 0.999949 + . ID=CGI_10012644; scaffold748 GLEAN mRNA 173606 183428 0.999949 + . ID=CGI_10012644; scaffold748 TRF Tandem_Repeat 180258 180299 50 + . . scaffold748 TRF Tandem_Repeat 182125 182571 743 + . . scaffold748 TRF Tandem_Repeat 185313 185660 383 + . . scaffold748 GLEAN promoter 187830 188829 1 + . ID=CGI_10012645; scaffold748 GLEAN mRNA 188830 190239 1 + . ID=CGI_10012645; scaffold748 GLEAN mRNA 191719 203187 0.750566 - . ID=CGI_10012646; scaffold748 GLEAN promoter 203188 204187 0.750566 - . ID=CGI_10012646; scaffold748 GLEAN promoter 204091 205090 0.763553 + . ID=CGI_10012647; scaffold748 GLEAN mRNA 205091 222360 0.763553 + . ID=CGI_10012647; scaffold748 TRF Tandem_Repeat 213616 214208 1006 + . . scaffold748 GLEAN promoter 224603 225602 1 + . ID=CGI_10012648; scaffold748 GLEAN mRNA 225603 232769 1 + . ID=CGI_10012648; scaffold748 TRF Tandem_Repeat 229336 230036 652 + . . scaffold748 TRF Tandem_Repeat 229336 230036 652 + . . scaffold748 TRF Tandem_Repeat 229336 229650 495 + . . scaffold748 TRF Tandem_Repeat 229667 229845 304 + . . scaffold748 TRF Tandem_Repeat 229861 230036 286 + . . scaffold748 TRF Tandem_Repeat 242793 243824 1026 + . . scaffold748 TRF Tandem_Repeat 242820 243824 1004 + . . scaffold748 TRF Tandem_Repeat 242820 243822 899 + . . scaffold748 TRF Tandem_Repeat 244346 244372 54 + . . scaffold748 WUBlastX LINE_RTE-X 247633 248001 106 - . . scaffold748 WUBlastX LINE_RTE-X 247750 248001 116 - . . scaffold748 WUBlastX LINE_RTE-X 259876 260394 115 - . . scaffold748 WUBlastX LINE_RTE-X 259993 260469 134 - . . scaffold748 WUBlastX LINE_RTE-X 260487 260954 244 - . . scaffold748 WUBlastX LINE_L2 260652 261011 62 - . . scaffold748 WUBlastX LINE_L2 260652 261110 47 - . . scaffold748 GLEAN promoter 262324 263323 0.531144 + . ID=CGI_10012649; scaffold748 GLEAN mRNA 263324 264075 0.531144 + . ID=CGI_10012649; scaffold748 GLEAN promoter 269001 270000 0.91118 + . ID=CGI_10012650; scaffold748 GLEAN mRNA 270001 283042 0.91118 + . ID=CGI_10012650; scaffold748 GLEAN promoter 283148 284147 0.911181 + . ID=CGI_10012651; scaffold748 GLEAN mRNA 284148 284499 0.911181 + . ID=CGI_10012651; scaffold748 WUBlastX LINE_RTE-BovB 285775 286119 31 + . . scaffold748 WUBlastX LINE_RTE-X 285880 286671 166 + . . scaffold748 WUBlastX LINE_RTE-X 285913 286566 169 + . . scaffold748 WUBlastX LINE_RTE-X 288331 288633 107 + . . scaffold748 WUBlastX LINE_RTE-X 290588 290917 50 - . . scaffold748 WUBlastX LINE_RTE-X 290726 290917 86 - . . scaffold748 WUBlastX LINE_RTE-X 290919 291188 73 - . . scaffold748 WUBlastX LINE_RTE-X 290982 291188 84 - . . scaffold748 TRF Tandem_Repeat 308213 308420 348 + . . scaffold748 GLEAN mRNA 320552 321669 1 - . ID=CGI_10012652; scaffold748 GLEAN promoter 321670 322669 1 - . ID=CGI_10012652; scaffold749 WUBlastX DNA_Crypton 1046 1702 233 + . . scaffold749 WUBlastX DNA_Crypton 3413 3916 73 + . . scaffold749 WUBlastX DNA_Crypton 17884 18183 62 - . . scaffold749 WUBlastX DNA_Crypton 18604 18804 54 - . . scaffold749 GLEAN mRNA 27460 29307 0.999999 - . ID=CGI_10002823; scaffold749 GLEAN promoter 29308 30307 0.999999 - . ID=CGI_10002823; scaffold749 GLEAN mRNA 29778 38516 1 - . ID=CGI_10002824; scaffold749 GLEAN promoter 38517 39516 1 - . ID=CGI_10002824; scaffold749 GLEAN promoter 39569 40568 0.999642 + . ID=CGI_10002825; scaffold749 GLEAN mRNA 40569 41636 0.999642 + . ID=CGI_10002825; scaffold749 TRF Tandem_Repeat 46895 46930 63 + . . scaffold749 GLEAN mRNA 47188 48974 0.999376 - . ID=CGI_10002826; scaffold749 GLEAN promoter 48975 49974 0.999376 - . ID=CGI_10002826; scaffold749 WUBlastX LINE_CR1-L2 50927 51355 159 + . . scaffold749 GLEAN mRNA 51985 56678 1 - . ID=CGI_10002827; scaffold749 WUBlastX LINE_RTE-X 53718 54248 110 - . . scaffold749 WUBlastX LINE_RTE-X 53826 54248 118 - . . scaffold749 GLEAN promoter 56679 57033 1 - . ID=CGI_10002827; scaffold75 GLEAN promoter 40103 41102 0.980383 + . ID=CGI_10005789; scaffold75 GLEAN mRNA 41103 44837 0.980383 + . ID=CGI_10005789; scaffold75 WUBlastX DNA_Harbinger 43381 43677 67 - . . scaffold75 WUBlastX DNA_Harbinger 43381 43518 89 - . . scaffold75 GLEAN mRNA 46839 68019 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX DNA_TcMar-Marin 48769 48909 55 + . . scaffold75 WUBlastX DNA_TcMar-Marin 48912 49421 287 + . . scaffold75 WUBlastX DNA_TcMar-Marin 49597 50001 232 + . . scaffold75 WUBlastX LTR_Pao 66961 67545 113 - . . scaffold75 WUBlastX LTR_Pao 67159 67995 70 - . . scaffold75 GLEAN promoter 68020 69019 0.92374 - . ID=CGI_10005790; scaffold75 WUBlastX RC_Helitron 86052 87269 475 - . . scaffold75 WUBlastX RC_Helitron 87274 91374 2616 - . . scaffold75 WUBlastX RC_Helitron 91321 92214 53 - . . scaffold75 WUBlastX RC_Helitron 91597 92172 85 - . . scaffold75 TRF Tandem_Repeat 92322 92367 53 + . . scaffold75 GLEAN mRNA 95624 99392 1 - . ID=CGI_10005791; scaffold75 GLEAN promoter 99393 100392 1 - . ID=CGI_10005791; scaffold75 GLEAN mRNA 99487 103826 0.790811 - . ID=CGI_10005792; scaffold75 GLEAN promoter 103827 104826 0.790811 - . ID=CGI_10005792; scaffold75 GLEAN promoter 105995 106994 0.811718 + . ID=CGI_10005793; scaffold75 GLEAN mRNA 106995 128840 0.811718 + . ID=CGI_10005793; scaffold75 GLEAN mRNA 116890 124938 0.990515 - . ID=CGI_10005794; scaffold75 TRF Tandem_Repeat 121965 122141 70 + . . scaffold75 GLEAN promoter 124939 125938 0.990515 - . ID=CGI_10005794; scaffold75 TRF Tandem_Repeat 125096 125134 78 + . . scaffold75 TRF Tandem_Repeat 130755 131052 409 + . . scaffold75 TRF Tandem_Repeat 130758 131053 411 + . . scaffold75 TRF Tandem_Repeat 131967 132090 140 + . . scaffold75 TRF Tandem_Repeat 132751 132924 231 + . . scaffold75 TRF Tandem_Repeat 132941 133148 272 + . . scaffold75 TRF Tandem_Repeat 134517 134542 52 + . . scaffold75 WUBlastX LTR_Gypsy 134793 135863 659 + . . scaffold75 WUBlastX LTR_Gypsy 136391 136639 84 - . . scaffold75 WUBlastX LTR_Gypsy 136433 136669 165 - . . scaffold750 GLEAN promoter 4241 5240 0.971968 + . ID=CGI_10022205; scaffold750 GLEAN mRNA 5241 30687 0.971968 + . ID=CGI_10022205; scaffold750 WUBlastX LINE_L2 14731 15132 32 + . . scaffold750 WUBlastX LINE_CR1 14908 15126 35 + . . scaffold750 WUBlastX LINE_CR1-L2 15013 15135 40 + . . scaffold750 WUBlastX LINE_CR1-L2 15138 15839 190 + . . scaffold750 WUBlastX LINE_L2 15681 15878 50 + . . scaffold750 WUBlastX LINE_L2 15815 16009 31 + . . scaffold750 TRF Tandem_Repeat 19989 20013 50 + . . scaffold750 GLEAN mRNA 31121 33745 0.994922 - . ID=CGI_10022206; scaffold750 GLEAN promoter 33746 34745 0.994922 - . ID=CGI_10022206; scaffold750 WUBlastX LINE_L2 34454 34987 112 + . . scaffold750 WUBlastX LINE_CR1-L2 34460 34756 121 + . . scaffold750 WUBlastX LINE_Penelope 42039 42989 172 - . . scaffold750 WUBlastX LINE_Penelope 42986 43102 23 - . . scaffold750 WUBlastX LINE_Penelope 43066 43620 378 - . . scaffold750 WUBlastX LINE_Penelope 43075 44112 372 - . . scaffold750 WUBlastX LINE_Penelope 43728 44237 139 - . . scaffold750 WUBlastX LINE_Penelope 44082 44279 34 - . . scaffold750 TRF Tandem_Repeat 46361 46413 106 + . . scaffold750 TRF Tandem_Repeat 59499 59539 82 + . . scaffold750 GLEAN mRNA 61126 62562 0.999673 - . ID=CGI_10022207; scaffold750 GLEAN promoter 62563 63562 0.999673 - . ID=CGI_10022207; scaffold750 GLEAN mRNA 63072 66460 0.840083 - . ID=CGI_10022208; scaffold750 GLEAN promoter 66461 67460 0.840083 - . ID=CGI_10022208; scaffold750 TRF Tandem_Repeat 68190 68245 112 + . . scaffold750 TRF Tandem_Repeat 70775 70828 108 + . . scaffold750 GLEAN mRNA 78050 80425 1 - . ID=CGI_10022209; scaffold750 TRF Tandem_Repeat 78242 78348 214 + . . scaffold750 GLEAN promoter 80426 81425 1 - . ID=CGI_10022209; scaffold750 TRF Tandem_Repeat 80594 80687 118 + . . scaffold750 TRF Tandem_Repeat 80772 80863 76 + . . scaffold750 GLEAN promoter 88860 89859 0.969424 + . ID=CGI_10022210; scaffold750 GLEAN mRNA 89860 90944 0.969424 + . ID=CGI_10022210; scaffold750 GLEAN promoter 90087 91086 0.997405 + . ID=CGI_10022211; scaffold750 GLEAN mRNA 91087 94484 0.997405 + . ID=CGI_10022211; scaffold750 GLEAN mRNA 95673 121067 0.651358 - . ID=CGI_10022212; scaffold750 GLEAN promoter 96794 97793 1 + . ID=CGI_10022213; scaffold750 TRF Tandem_Repeat 97189 97214 52 + . . scaffold750 GLEAN mRNA 97794 108709 1 + . ID=CGI_10022213; scaffold750 WUBlastX DNA_IS4EU 110096 110302 68 + . . scaffold750 WUBlastX DNA_IS4EU 112112 112276 39 + . . scaffold750 WUBlastX DNA_IS4EU 112284 112466 65 + . . scaffold750 GLEAN promoter 121068 122067 0.651358 - . ID=CGI_10022212; scaffold750 TRF Tandem_Repeat 127686 127802 110 + . . scaffold750 WUBlastX LINE_Penelope 130385 130849 165 + . . scaffold750 WUBlastX LINE_Penelope 130421 130813 235 + . . scaffold750 WUBlastX LINE_Penelope 130917 131252 64 + . . scaffold750 WUBlastX LINE_Penelope 131230 131631 105 + . . scaffold750 WUBlastX LINE_Penelope 131245 131763 68 + . . scaffold750 GLEAN mRNA 139626 150700 0.981474 - . ID=CGI_10022214; scaffold750 TRF Tandem_Repeat 143486 143531 92 + . . scaffold750 TRF Tandem_Repeat 146722 146959 197 + . . scaffold750 TRF Tandem_Repeat 146722 146959 198 + . . scaffold750 TRF Tandem_Repeat 149382 149424 86 + . . scaffold750 GLEAN promoter 150701 151700 0.981474 - . ID=CGI_10022214; scaffold750 GLEAN mRNA 150953 155345 1 - . ID=CGI_10022215; scaffold750 GLEAN promoter 155346 156345 1 - . ID=CGI_10022215; scaffold750 TRF Tandem_Repeat 169477 169570 89 + . . scaffold750 TRF Tandem_Repeat 169477 169570 116 + . . scaffold750 TRF Tandem_Repeat 169477 169572 97 + . . scaffold750 TRF Tandem_Repeat 169691 169724 59 + . . scaffold750 TRF Tandem_Repeat 206190 206276 160 + . . scaffold750 GLEAN mRNA 214645 224401 0.998842 - . ID=CGI_10022216; scaffold750 TRF Tandem_Repeat 222550 222643 65 + . . scaffold750 GLEAN promoter 224402 225401 0.998842 - . ID=CGI_10022216; scaffold750 WUBlastX LINE_L2 224444 224764 53 - . . scaffold750 GLEAN mRNA 225300 225653 1 - . ID=CGI_10022217; scaffold750 GLEAN promoter 225654 226653 1 - . ID=CGI_10022217; scaffold750 TRF Tandem_Repeat 233231 233301 142 + . . scaffold750 WUBlastX DNA_TcMar-Tc1 239362 239595 21 + . . scaffold750 WUBlastX DNA_TcMar-Tc1 239416 239589 59 + . . scaffold750 WUBlastX DNA_TcMar-Tc1 239586 240212 362 + . . scaffold750 WUBlastX DNA_TcMar-Tc1 240221 240388 70 + . . scaffold750 TRF Tandem_Repeat 244759 244817 102 + . . scaffold750 TRF Tandem_Repeat 244960 245005 92 + . . scaffold750 TRF Tandem_Repeat 245075 245128 72 + . . scaffold750 GLEAN promoter 246106 247105 0.999607 + . ID=CGI_10022218; scaffold750 GLEAN mRNA 247106 253581 0.999607 + . ID=CGI_10022218; scaffold750 TRF Tandem_Repeat 255199 255263 67 + . . scaffold750 GLEAN promoter 268602 269601 0.989328 + . ID=CGI_10022219; scaffold750 GLEAN mRNA 269602 294126 0.989328 + . ID=CGI_10022219; scaffold750 TRF Tandem_Repeat 270165 270266 64 + . . scaffold750 TRF Tandem_Repeat 298915 298965 102 + . . scaffold750 TRF Tandem_Repeat 304292 304383 114 + . . scaffold750 TRF Tandem_Repeat 304461 304619 171 + . . scaffold750 TRF Tandem_Repeat 304670 304757 160 + . . scaffold750 TRF Tandem_Repeat 304837 304930 82 + . . scaffold750 TRF Tandem_Repeat 304999 305151 173 + . . scaffold750 TRF Tandem_Repeat 305343 305436 118 + . . scaffold750 TRF Tandem_Repeat 305668 305768 103 + . . scaffold750 TRF Tandem_Repeat 305975 306148 197 + . . scaffold750 TRF Tandem_Repeat 306214 306305 121 + . . scaffold750 TRF Tandem_Repeat 306347 306440 100 + . . scaffold750 TRF Tandem_Repeat 306613 306744 122 + . . scaffold750 TRF Tandem_Repeat 306821 306912 105 + . . scaffold750 TRF Tandem_Repeat 306972 307062 94 + . . scaffold750 TRF Tandem_Repeat 309775 309847 137 + . . scaffold750 TRF Tandem_Repeat 318918 318970 106 + . . scaffold750 WUBlastX DNA_TcMar-Fot1 326993 328420 420 + . . scaffold750 WUBlastX DNA_TcMar-Fot1 327011 328183 422 + . . scaffold750 TRF Tandem_Repeat 344169 344212 79 + . . scaffold750 TRF Tandem_Repeat 347687 347749 126 + . . scaffold750 TRF Tandem_Repeat 351761 351799 69 + . . scaffold750 TRF Tandem_Repeat 353872 354097 238 + . . scaffold750 TRF Tandem_Repeat 355549 355759 253 + . . scaffold750 TRF Tandem_Repeat 355549 355701 69 + . . scaffold750 TRF Tandem_Repeat 355566 355788 185 + . . scaffold750 WUBlastX LTR_DIRS 372520 372858 77 - . . scaffold750 WUBlastX LTR_DIRS 373345 373503 23 - . . scaffold750 TRF Tandem_Repeat 380446 380495 100 + . . scaffold750 TRF Tandem_Repeat 382429 382458 51 + . . scaffold750 TRF Tandem_Repeat 384779 384822 88 + . . scaffold750 TRF Tandem_Repeat 387018 387085 127 + . . scaffold750 TRF Tandem_Repeat 395902 395944 86 + . . scaffold750 TRF Tandem_Repeat 401149 401178 60 + . . scaffold750 WUBlastX DNA_TcMar-Marin 402113 402517 229 - . . scaffold750 WUBlastX DNA_TcMar-Marin 402699 403367 338 - . . scaffold750 TRF Tandem_Repeat 403994 404019 52 + . . scaffold750 TRF Tandem_Repeat 404021 404059 78 + . . scaffold750 TRF Tandem_Repeat 410592 410634 50 + . . scaffold750 TRF Tandem_Repeat 432589 432614 52 + . . scaffold750 TRF Tandem_Repeat 440375 440437 126 + . . scaffold750 TRF Tandem_Repeat 444618 444674 114 + . . scaffold750 WUBlastX LTR_Gypsy 444931 445482 172 + . . scaffold750 WUBlastX LTR_Gypsy 445018 445497 235 + . . scaffold750 WUBlastX LTR_Gypsy 445111 445584 176 + . . scaffold750 WUBlastX LTR_Gypsy 445129 445506 269 + . . scaffold750 WUBlastX LTR_Gypsy 445539 445625 29 + . . scaffold750 WUBlastX LTR_Gypsy 445610 445831 63 + . . scaffold750 WUBlastX LTR_Gypsy 445809 445940 61 + . . scaffold750 TRF Tandem_Repeat 450700 450751 104 + . . scaffold750 TRF Tandem_Repeat 451895 452776 1120 + . . scaffold750 WUBlastX DNA_P 453915 453968 22 - . . scaffold750 WUBlastX DNA_P 454567 454725 97 - . . scaffold750 WUBlastX DNA_P 454888 454932 22 - . . scaffold750 WUBlastX DNA_P 458657 458755 28 - . . scaffold750 WUBlastX DNA_P 458696 458776 32 - . . scaffold750 WUBlastX DNA_P 458962 459204 25 - . . scaffold750 WUBlastX DNA_P 459007 459192 98 - . . scaffold750 WUBlastX DNA_P 459010 459228 64 - . . scaffold750 WUBlastX DNA_P 459352 459498 55 - . . scaffold750 WUBlastX DNA_P 459517 459969 47 - . . scaffold750 WUBlastX DNA_P 459598 459813 109 - . . scaffold750 WUBlastX DNA_P 459604 459864 93 - . . scaffold750 WUBlastX DNA_P 459973 460026 32 - . . scaffold750 WUBlastX DNA_P 460011 460145 61 - . . scaffold750 WUBlastX DNA_P 460247 460459 46 - . . scaffold750 WUBlastX DNA_P 460316 460456 68 - . . scaffold750 WUBlastX DNA_P 460594 460764 79 - . . scaffold750 WUBlastX DNA_P 460594 460731 102 - . . scaffold750 WUBlastX DNA_P 460853 460978 25 - . . scaffold750 TRF Tandem_Repeat 463651 463683 57 + . . scaffold750 WUBlastX DNA_IS4EU 463691 464155 184 + . . scaffold750 WUBlastX DNA_Kolobok-IS4 464190 464552 53 + . . scaffold750 WUBlastX DNA_IS4EU 465191 465313 28 - . . scaffold750 WUBlastX DNA_IS4EU 465307 465735 236 - . . scaffold750 WUBlastX DNA_IS4EU 465738 466106 200 - . . scaffold750 WUBlastX DNA_IS4EU 466420 466716 88 - . . scaffold750 GLEAN mRNA 490145 494482 0.999308 - . ID=CGI_10022220; scaffold750 TRF Tandem_Repeat 493320 493350 55 + . . scaffold750 GLEAN promoter 494483 495482 0.999308 - . ID=CGI_10022220; scaffold750 WUBlastX LTR_Gypsy 497006 497509 23 - . . scaffold750 WUBlastX LTR_Gypsy 497366 497734 40 - . . scaffold750 WUBlastX LTR_Gypsy 497423 497758 92 - . . scaffold750 WUBlastX LTR_Gypsy 497649 498293 292 - . . scaffold750 WUBlastX LTR_Gypsy 497787 499499 422 - . . scaffold750 WUBlastX LTR_Gypsy? 499452 500417 27 + . . scaffold750 WUBlastX LTR_Gypsy 499774 499980 29 - . . scaffold750 WUBlastX LINE_CR1-L2 505917 506606 99 - . . scaffold750 WUBlastX LINE_CR1-L2 506277 506606 100 - . . scaffold750 WUBlastX LINE_CR1-L2 506361 506600 136 - . . scaffold750 WUBlastX LINE_L2 506618 506713 57 - . . scaffold750 TRF Tandem_Repeat 508778 508839 115 + . . scaffold750 TRF Tandem_Repeat 526477 526920 484 + . . scaffold750 TRF Tandem_Repeat 528877 528922 92 + . . scaffold750 GLEAN promoter 531479 532478 0.999964 + . ID=CGI_10022221; scaffold750 GLEAN mRNA 532479 532727 0.999964 + . ID=CGI_10022221; scaffold750 WUBlastX LTR_Ngaro 537331 537606 130 + . . scaffold750 WUBlastX LTR_Ngaro 537331 537687 70 + . . scaffold750 WUBlastX LTR_Ngaro 537666 537755 55 + . . scaffold750 WUBlastX LTR_Ngaro 537758 537955 48 + . . scaffold750 WUBlastX LTR_Ngaro 537889 538512 132 + . . scaffold750 GLEAN mRNA 541518 556589 0.999027 - . ID=CGI_10022222; scaffold750 TRF Tandem_Repeat 542950 542997 96 + . . scaffold750 GLEAN promoter 546637 547636 0.994233 + . ID=CGI_10022223; scaffold750 GLEAN mRNA 547637 548836 0.994233 + . ID=CGI_10022223; scaffold750 GLEAN promoter 556590 557589 0.999027 - . ID=CGI_10022222; scaffold750 TRF Tandem_Repeat 564671 564712 84 + . . scaffold750 GLEAN promoter 570526 571525 0.859031 + . ID=CGI_10022224; scaffold750 GLEAN mRNA 571526 585314 0.859031 + . ID=CGI_10022224; scaffold750 TRF Tandem_Repeat 573669 573718 91 + . . scaffold750 TRF Tandem_Repeat 577146 577266 215 + . . scaffold750 GLEAN mRNA 586407 589403 0.591326 - . ID=CGI_10022225; scaffold750 TRF Tandem_Repeat 587782 587855 123 + . . scaffold750 TRF Tandem_Repeat 587783 587852 70 + . . scaffold750 GLEAN promoter 589404 590403 0.591326 - . ID=CGI_10022225; scaffold750 WUBlastX LINE_RTE-X 593277 593648 47 + . . scaffold750 WUBlastX LINE_RTE-X 593346 593717 43 + . . scaffold750 WUBlastX LINE_RTE-X 593627 593773 39 + . . scaffold750 WUBlastX LINE_RTE-X 593633 593806 30 + . . scaffold750 TRF Tandem_Repeat 595366 595415 91 + . . scaffold750 WUBlastX DNA_hAT-Ac 596560 596721 86 - . . scaffold750 WUBlastX DNA_hAT-Ac 596590 597048 135 - . . scaffold750 TRF Tandem_Repeat 611007 611388 218 + . . scaffold750 TRF Tandem_Repeat 611007 611396 303 + . . scaffold750 TRF Tandem_Repeat 611077 611351 233 + . . scaffold750 GLEAN promoter 611404 612403 0.994233 + . ID=CGI_10022226; scaffold750 TRF Tandem_Repeat 611998 612053 112 + . . scaffold750 GLEAN mRNA 612404 615831 0.994233 + . ID=CGI_10022226; scaffold750 GLEAN mRNA 621484 625381 1 - . ID=CGI_10022227; scaffold750 GLEAN promoter 625382 626381 1 - . ID=CGI_10022227; scaffold750 TRF Tandem_Repeat 625454 625480 54 + . . scaffold750 GLEAN promoter 625763 626762 1 + . ID=CGI_10022228; scaffold750 TRF Tandem_Repeat 625858 625895 76 + . . scaffold750 GLEAN mRNA 626763 629503 1 + . ID=CGI_10022228; scaffold750 TRF Tandem_Repeat 627106 627162 105 + . . scaffold750 GLEAN promoter 628506 629505 1 + . ID=CGI_10022229; scaffold750 GLEAN mRNA 629506 641441 1 + . ID=CGI_10022229; scaffold750 TRF Tandem_Repeat 631699 631747 98 + . . scaffold750 TRF Tandem_Repeat 637784 637860 154 + . . scaffold750 TRF Tandem_Repeat 639342 639412 142 + . . scaffold750 TRF Tandem_Repeat 641826 642037 264 + . . scaffold750 TRF Tandem_Repeat 641826 642067 288 + . . scaffold750 TRF Tandem_Repeat 644235 644273 78 + . . scaffold750 GLEAN mRNA 645437 652543 1 - . ID=CGI_10022230; scaffold750 TRF Tandem_Repeat 646504 646729 280 + . . scaffold750 GLEAN promoter 652544 653543 1 - . ID=CGI_10022230; scaffold750 TRF Tandem_Repeat 655696 655737 84 + . . scaffold750 TRF Tandem_Repeat 656572 656659 81 + . . scaffold750 TRF Tandem_Repeat 660675 660767 80 + . . scaffold750 TRF Tandem_Repeat 663508 663557 66 + . . scaffold750 TRF Tandem_Repeat 706689 706739 50 + . . scaffold750 TRF Tandem_Repeat 706696 706740 54 + . . scaffold750 WUBlastX LINE_L1 710826 711227 76 + . . scaffold750 WUBlastX LINE_L1-Tx1 710946 711272 78 + . . scaffold750 TRF Tandem_Repeat 716069 716153 91 + . . scaffold750 TRF Tandem_Repeat 716074 716141 54 + . . scaffold750 TRF Tandem_Repeat 716088 716153 58 + . . scaffold750 TRF Tandem_Repeat 721006 721073 72 + . . scaffold750 TRF Tandem_Repeat 721006 721083 77 + . . scaffold750 TRF Tandem_Repeat 721018 721083 86 + . . scaffold750 TRF Tandem_Repeat 722792 722857 132 + . . scaffold750 TRF Tandem_Repeat 723691 723725 70 + . . scaffold750 TRF Tandem_Repeat 723802 723842 64 + . . scaffold750 TRF Tandem_Repeat 728270 728365 156 + . . scaffold750 TRF Tandem_Repeat 732703 732748 58 + . . scaffold750 WUBlastX LINE_L1-Tx1 733037 733783 97 + . . scaffold751 TRF Tandem_Repeat 1598 1871 521 + . . scaffold751 GLEAN mRNA 6909 9860 0.698176 - . ID=CGI_10017378; scaffold751 TRF Tandem_Repeat 8833 8866 59 + . . scaffold751 GLEAN promoter 9861 10860 0.698176 - . ID=CGI_10017378; scaffold751 GLEAN mRNA 11762 16701 0.99963 - . ID=CGI_10017379; scaffold751 GLEAN promoter 16702 17701 0.99963 - . ID=CGI_10017379; scaffold751 TRF Tandem_Repeat 36581 36624 88 + . . scaffold751 TRF Tandem_Repeat 37737 37784 96 + . . scaffold751 TRF Tandem_Repeat 37885 37926 66 + . . scaffold751 TRF Tandem_Repeat 39402 39471 133 + . . scaffold751 TRF Tandem_Repeat 39469 39526 116 + . . scaffold751 TRF Tandem_Repeat 45660 45742 107 + . . scaffold751 GLEAN promoter 50605 51604 0.999993 + . ID=CGI_10017380; scaffold751 GLEAN mRNA 51605 52752 0.999993 + . ID=CGI_10017380; scaffold751 TRF Tandem_Repeat 55964 55996 66 + . . scaffold751 TRF Tandem_Repeat 63683 63835 211 + . . scaffold751 TRF Tandem_Repeat 63685 63823 54 + . . scaffold751 GLEAN mRNA 69978 88588 0.139688 - . ID=CGI_10017381; scaffold751 TRF Tandem_Repeat 77035 77067 66 + . . scaffold751 GLEAN promoter 88589 89588 0.139688 - . ID=CGI_10017381; scaffold751 GLEAN promoter 93947 94946 0.999415 + . ID=CGI_10017382; scaffold751 GLEAN mRNA 94947 97024 0.999415 + . ID=CGI_10017382; scaffold751 WUBlastX DNA_P 94947 95144 54 + . . scaffold751 WUBlastX DNA_IS4EU 95933 96994 363 + . . scaffold751 WUBlastX DNA_IS4EU 97161 97763 237 - . . scaffold751 WUBlastX DNA_IS4EU 97164 98504 95 - . . scaffold751 WUBlastX DNA_IS4EU 97197 97895 154 - . . scaffold751 WUBlastX DNA_Kolobok 102604 102846 57 + . . scaffold751 WUBlastX DNA_Kolobok 102876 103322 283 + . . scaffold751 WUBlastX DNA_Kolobok 103289 103600 32 + . . scaffold751 WUBlastX DNA_Kolobok 103803 103991 95 - . . scaffold751 WUBlastX DNA_Kolobok 103833 103991 96 - . . scaffold751 WUBlastX DNA_Kolobok 104281 104493 51 - . . scaffold751 GLEAN mRNA 108007 114036 0.999933 - . ID=CGI_10017384; scaffold751 TRF Tandem_Repeat 111571 112425 1071 + . . scaffold751 GLEAN promoter 113344 114343 0.531612 + . ID=CGI_10017385; scaffold751 GLEAN promoter 114037 115036 0.999933 - . ID=CGI_10017384; scaffold751 GLEAN mRNA 114344 114784 0.531612 + . ID=CGI_10017385; scaffold751 GLEAN promoter 115903 116902 0.999997 + . ID=CGI_10017386; scaffold751 GLEAN mRNA 116903 123513 0.999997 + . ID=CGI_10017386; scaffold751 GLEAN mRNA 117326 117712 0.59015 - . ID=CGI_10017387; scaffold751 WUBlastX LTR_Gypsy 117476 118057 64 - . . scaffold751 GLEAN promoter 117713 118712 0.59015 - . ID=CGI_10017387; scaffold751 WUBlastX LTR_Gypsy 119902 120330 240 - . . scaffold751 WUBlastX LTR_Gypsy 120513 120749 77 - . . scaffold751 WUBlastX LTR_Gypsy 120645 121157 175 - . . scaffold751 WUBlastX LTR_Gypsy 120789 121157 192 - . . scaffold751 WUBlastX LTR_Gypsy 121105 121443 140 - . . scaffold751 TRF Tandem_Repeat 123837 123875 60 + . . scaffold751 WUBlastX LINE_L1 136624 136791 50 + . . scaffold751 WUBlastX LINE_L1-Tx1 136657 136809 68 + . . scaffold751 WUBlastX LINE_L1-Tx1 136700 137278 92 + . . scaffold751 WUBlastX LINE_L1-Tx1 136796 138877 850 + . . scaffold751 WUBlastX LINE_R2 138269 138991 33 + . . scaffold751 WUBlastX DNA_TcMar-Marin 144355 144633 58 - . . scaffold751 TRF Tandem_Repeat 145699 145743 63 + . . scaffold751 WUBlastX LINE_CR1 146256 146303 22 + . . scaffold751 WUBlastX LINE_CR1 146271 146303 23 + . . scaffold751 WUBlastX LINE_L1 146729 146890 33 + . . scaffold751 WUBlastX LINE_L1-Tx1 146917 147786 452 + . . scaffold751 WUBlastX LINE_L1 147789 148205 30 + . . scaffold751 WUBlastX LINE_L1-Tx1 147867 148709 170 + . . scaffold751 WUBlastX LINE_L1-Tx1 148807 149100 28 + . . scaffold751 WUBlastX LINE_L1-Tx1 149136 149354 21 + . . scaffold751 GLEAN mRNA 154176 165740 0.999947 - . ID=CGI_10017388; scaffold751 WUBlastX DNA_TcMar-Tc1 155383 155913 43 - . . scaffold751 WUBlastX DNA_TcMar-Tc1 155647 155913 60 - . . scaffold751 WUBlastX DNA_TcMar-Tc1 155791 156027 27 - . . scaffold751 WUBlastX DNA_TcMar-Tc1 156119 156199 23 - . . scaffold751 GLEAN promoter 165741 166740 0.999947 - . ID=CGI_10017388; scaffold751 TRF Tandem_Repeat 165801 165833 66 + . . scaffold751 TRF Tandem_Repeat 173459 173929 753 + . . scaffold751 TRF Tandem_Repeat 173459 173929 879 + . . scaffold751 TRF Tandem_Repeat 183808 183914 133 + . . scaffold751 TRF Tandem_Repeat 185531 185676 94 + . . scaffold751 TRF Tandem_Repeat 185586 185676 146 + . . scaffold751 TRF Tandem_Repeat 186027 186274 193 + . . scaffold751 TRF Tandem_Repeat 187874 188575 1254 + . . scaffold751 TRF Tandem_Repeat 227133 227300 111 + . . scaffold751 WUBlastX DNA_TcMar-Marin 228943 228999 21 + . . scaffold751 WUBlastX DNA_TcMar-Marin 229112 229351 57 + . . scaffold751 TRF Tandem_Repeat 234160 234231 72 + . . scaffold751 GLEAN mRNA 235635 247422 0.327254 - . ID=CGI_10017389; scaffold751 WUBlastX LINE_RTE-X 246410 247060 68 + . . scaffold751 WUBlastX LINE_RTE-X 246410 246955 104 + . . scaffold751 GLEAN promoter 247423 248422 0.327254 - . ID=CGI_10017389; scaffold751 GLEAN mRNA 247703 249247 1 - . ID=CGI_10017390; scaffold751 GLEAN promoter 249248 250247 1 - . ID=CGI_10017390; scaffold751 GLEAN promoter 250563 251562 0.593196 + . ID=CGI_10017391; scaffold751 GLEAN mRNA 251563 253010 0.593196 + . ID=CGI_10017391; scaffold751 GLEAN promoter 252997 253996 0.752234 + . ID=CGI_10017392; scaffold751 GLEAN mRNA 253997 271173 0.752234 + . ID=CGI_10017392; scaffold751 TRF Tandem_Repeat 272814 272859 92 + . . scaffold751 GLEAN promoter 276061 277060 0.776618 + . ID=CGI_10017393; scaffold751 GLEAN mRNA 277061 277384 0.776618 + . ID=CGI_10017393; scaffold751 TRF Tandem_Repeat 279100 279146 94 + . . scaffold751 GLEAN mRNA 281322 293205 0.999629 - . ID=CGI_10017394; scaffold751 TRF Tandem_Repeat 282101 282135 70 + . . scaffold751 GLEAN promoter 292586 293585 0.999134 + . ID=CGI_10017395; scaffold751 GLEAN promoter 293206 294205 0.999629 - . ID=CGI_10017394; scaffold751 GLEAN mRNA 293586 308831 0.999134 + . ID=CGI_10017395; scaffold751 TRF Tandem_Repeat 306753 307884 1766 + . . scaffold751 TRF Tandem_Repeat 309290 309331 75 + . . scaffold751 GLEAN promoter 316498 317497 0.982371 + . ID=CGI_10017396; scaffold751 GLEAN mRNA 317498 322797 0.982371 + . ID=CGI_10017396; scaffold751 TRF Tandem_Repeat 321810 321847 76 + . . scaffold751 TRF Tandem_Repeat 324656 324693 76 + . . scaffold751 GLEAN promoter 330802 331801 0.906388 + . ID=CGI_10017397; scaffold751 GLEAN mRNA 331802 333813 0.906388 + . ID=CGI_10017397; scaffold751 TRF Tandem_Repeat 345327 348059 2593 + . . scaffold751 TRF Tandem_Repeat 345327 348059 2595 + . . scaffold751 GLEAN promoter 353556 354555 0.996912 + . ID=CGI_10017398; scaffold751 GLEAN mRNA 354556 358676 0.996912 + . ID=CGI_10017398; scaffold751 TRF Tandem_Repeat 355300 355391 53 + . . scaffold751 GLEAN mRNA 366121 384453 0.608405 - . ID=CGI_10017399; scaffold751 TRF Tandem_Repeat 367713 367748 54 + . . scaffold751 TRF Tandem_Repeat 373390 373573 257 + . . scaffold751 TRF Tandem_Repeat 374855 375439 808 + . . scaffold751 GLEAN promoter 384454 385453 0.608405 - . ID=CGI_10017399; scaffold751 TRF Tandem_Repeat 384596 384657 108 + . . scaffold751 GLEAN promoter 384776 385775 0.993535 + . ID=CGI_10017400; scaffold751 GLEAN mRNA 385776 387803 0.993535 + . ID=CGI_10017400; scaffold751 GLEAN promoter 391402 392401 0.594688 + . ID=CGI_10017401; scaffold751 GLEAN mRNA 392402 393833 0.594688 + . ID=CGI_10017401; scaffold751 GLEAN mRNA 397804 403896 1 - . ID=CGI_10017402; scaffold751 GLEAN promoter 403897 404896 1 - . ID=CGI_10017402; scaffold751 GLEAN mRNA 408046 415763 1 - . ID=CGI_10017403; scaffold751 GLEAN promoter 411321 412320 0.63152 + . ID=CGI_10017404; scaffold751 WUBlastX LINE_L2 411538 411768 54 + . . scaffold751 WUBlastX LINE_L2 411577 411807 75 + . . scaffold751 WUBlastX LINE_L2 411625 411837 79 + . . scaffold751 GLEAN mRNA 412321 443622 0.63152 + . ID=CGI_10017404; scaffold751 GLEAN promoter 415764 416763 1 - . ID=CGI_10017403; scaffold751 TRF Tandem_Repeat 418854 419651 1166 + . . scaffold751 GLEAN promoter 442699 443698 0.777728 + . ID=CGI_10017405; scaffold751 GLEAN mRNA 443699 444916 0.777728 + . ID=CGI_10017405; scaffold751 GLEAN mRNA 448773 484671 0.991356 - . ID=CGI_10017406; scaffold751 TRF Tandem_Repeat 450999 451037 78 + . . scaffold751 GLEAN promoter 484672 485671 0.991356 - . ID=CGI_10017406; scaffold751 TRF Tandem_Repeat 485292 485350 55 + . . scaffold751 GLEAN promoter 488023 489022 0.977273 + . ID=CGI_10017407; scaffold751 GLEAN mRNA 489023 489354 0.977273 + . ID=CGI_10017407; scaffold751 WUBlastX LINE_L2 500438 500731 51 + . . scaffold751 WUBlastX LINE_L2 500483 500719 111 + . . scaffold751 WUBlastX LINE_L2 500575 501303 173 + . . scaffold751 WUBlastX LINE_L2 500728 501891 355 + . . scaffold752 TRF Tandem_Repeat 251 307 114 + . . scaffold752 GLEAN mRNA 5099 6705 1 - . ID=CGI_10010037; scaffold752 GLEAN promoter 6706 7705 1 - . ID=CGI_10010037; scaffold752 GLEAN promoter 8483 9482 0.831804 + . ID=CGI_10010038; scaffold752 GLEAN mRNA 9483 39806 0.831804 + . ID=CGI_10010038; scaffold752 WUBlastX LINE_RTE-X 15591 15773 41 - . . scaffold752 WUBlastX LINE_RTE-X 15788 16276 137 - . . scaffold752 WUBlastX LINE_RTE-X 15848 16393 62 - . . scaffold752 TRF Tandem_Repeat 18804 18884 90 + . . scaffold752 TRF Tandem_Repeat 19778 19837 50 + . . scaffold752 TRF Tandem_Repeat 30302 30357 78 + . . scaffold752 WUBlastX LINE_RTE-X 45360 46346 186 - . . scaffold752 WUBlastX LINE_RTE-X 45480 46307 194 - . . scaffold752 GLEAN promoter 47151 48150 0.925262 + . ID=CGI_10010039; scaffold752 GLEAN mRNA 48151 65413 0.925262 + . ID=CGI_10010039; scaffold752 TRF Tandem_Repeat 51909 51973 121 + . . scaffold752 TRF Tandem_Repeat 60359 62125 2507 + . . scaffold752 TRF Tandem_Repeat 61128 61227 68 + . . scaffold752 TRF Tandem_Repeat 62224 62290 57 + . . scaffold752 TRF Tandem_Repeat 63741 63795 56 + . . scaffold752 GLEAN mRNA 70472 77921 0.502257 - . ID=CGI_10010040; scaffold752 GLEAN promoter 77922 78921 0.502257 - . ID=CGI_10010040; scaffold752 TRF Tandem_Repeat 78122 78203 112 + . . scaffold752 TRF Tandem_Repeat 79216 79325 202 + . . scaffold752 TRF Tandem_Repeat 80416 80440 50 + . . scaffold752 TRF Tandem_Repeat 103604 103654 84 + . . scaffold752 TRF Tandem_Repeat 126890 126947 116 + . . scaffold752 TRF Tandem_Repeat 136626 136678 65 + . . scaffold752 TRF Tandem_Repeat 141571 141624 108 + . . scaffold752 TRF Tandem_Repeat 141900 141972 146 + . . scaffold752 TRF Tandem_Repeat 143126 143190 123 + . . scaffold752 GLEAN mRNA 144022 154790 0.99952 - . ID=CGI_10010041; scaffold752 TRF Tandem_Repeat 154076 154106 62 + . . scaffold752 GLEAN promoter 154791 155790 0.99952 - . ID=CGI_10010041; scaffold752 TRF Tandem_Repeat 155057 155090 52 + . . scaffold752 TRF Tandem_Repeat 157819 157853 52 + . . scaffold752 GLEAN promoter 195717 196716 0.998504 + . ID=CGI_10010042; scaffold752 GLEAN mRNA 196717 198051 0.998504 + . ID=CGI_10010042; scaffold752 WUBlastX LTR_ERV1 196783 197145 32 + . . scaffold752 WUBlastX LTR_ERV1 200626 201246 32 - . . scaffold752 WUBlastX LTR_Gypsy 201299 201628 49 - . . scaffold752 WUBlastX LTR_Gypsy 226925 227059 29 - . . scaffold752 WUBlastX LTR_Gypsy 227022 227780 334 - . . scaffold752 WUBlastX LTR_Gypsy 227352 228473 423 - . . scaffold752 WUBlastX LTR_Gypsy 228201 228611 215 - . . scaffold752 WUBlastX LTR_Gypsy 228737 229510 72 - . . scaffold752 GLEAN promoter 230273 231272 0.996081 + . ID=CGI_10010043; scaffold752 GLEAN mRNA 231273 232436 0.996081 + . ID=CGI_10010043; scaffold752 WUBlastX LTR_ERV1 231492 231998 38 + . . scaffold752 GLEAN promoter 234985 235984 0.999984 + . ID=CGI_10010044; scaffold752 GLEAN mRNA 235985 237469 0.999984 + . ID=CGI_10010044; scaffold752 WUBlastX LTR_ERV1 236204 236740 21 + . . scaffold752 TRF Tandem_Repeat 238635 238758 79 + . . scaffold752 TRF Tandem_Repeat 239727 240557 713 + . . scaffold752 TRF Tandem_Repeat 239733 240477 980 + . . scaffold752 GLEAN mRNA 240800 251452 1 - . ID=CGI_10010045; scaffold752 GLEAN promoter 251453 251712 1 - . ID=CGI_10010045; scaffold753 GLEAN promoter 75 1074 0.99977 + . ID=CGI_10014193; scaffold753 GLEAN mRNA 1075 2471 0.99977 + . ID=CGI_10014193; scaffold753 TRF Tandem_Repeat 1435 1494 84 + . . scaffold753 GLEAN promoter 2895 3894 0.49987 + . ID=CGI_10014194; scaffold753 GLEAN mRNA 3895 15769 0.49987 + . ID=CGI_10014194; scaffold753 GLEAN promoter 35571 36570 0.958809 + . ID=CGI_10014195; scaffold753 GLEAN mRNA 36571 68340 0.958809 + . ID=CGI_10014195; scaffold753 WUBlastX LINE_L1 51885 52325 54 + . . scaffold753 WUBlastX LINE_CR1 51984 52337 154 + . . scaffold753 WUBlastX LINE_CR1 52047 52328 210 + . . scaffold753 WUBlastX LINE_L2 53500 53679 47 + . . scaffold753 WUBlastX LINE_CR1-L2 53699 54055 81 + . . scaffold753 TRF Tandem_Repeat 60223 60840 844 + . . scaffold753 TRF Tandem_Repeat 63784 64117 524 + . . scaffold753 TRF Tandem_Repeat 64076 64498 514 + . . scaffold753 TRF Tandem_Repeat 64088 64498 467 + . . scaffold753 TRF Tandem_Repeat 66563 66915 591 + . . scaffold753 GLEAN mRNA 80990 82513 0.82852 - . ID=CGI_10014196; scaffold753 GLEAN promoter 82514 83513 0.82852 - . ID=CGI_10014196; scaffold753 TRF Tandem_Repeat 88878 88922 81 + . . scaffold753 TRF Tandem_Repeat 90692 90716 50 + . . scaffold753 TRF Tandem_Repeat 91194 91255 124 + . . scaffold753 WUBlastX LINE_RTE-BovB 94051 94428 136 + . . scaffold753 WUBlastX LINE_RTE-BovB 94238 94915 147 + . . scaffold753 WUBlastX LTR_Pao 98518 103632 3981 - . . scaffold753 TRF Tandem_Repeat 103649 104035 258 + . . scaffold753 TRF Tandem_Repeat 103652 103979 333 + . . scaffold753 WUBlastX LTR_Pao 104107 104373 58 - . . scaffold753 TRF Tandem_Repeat 105926 107609 1827 + . . scaffold753 WUBlastX DNA_MuDR 115797 116093 90 + . . scaffold753 WUBlastX DNA_NOF? 116350 116793 129 + . . scaffold753 GLEAN promoter 116844 117843 0.99946 + . ID=CGI_10014198; scaffold753 GLEAN mRNA 117844 121131 0.99946 + . ID=CGI_10014198; scaffold753 GLEAN promoter 121568 122567 0.34159 + . ID=CGI_10014200; scaffold753 GLEAN mRNA 121751 145984 0.575697 - . ID=CGI_10014199; scaffold753 GLEAN mRNA 122568 150799 0.34159 + . ID=CGI_10014200; scaffold753 TRF Tandem_Repeat 131468 131771 408 + . . scaffold753 TRF Tandem_Repeat 132570 132998 516 + . . scaffold753 TRF Tandem_Repeat 132586 132983 510 + . . scaffold753 TRF Tandem_Repeat 139409 140033 950 + . . scaffold753 TRF Tandem_Repeat 142061 142108 96 + . . scaffold753 TRF Tandem_Repeat 143082 144385 2011 + . . scaffold753 TRF Tandem_Repeat 144555 144597 50 + . . scaffold753 GLEAN promoter 145985 146984 0.575697 - . ID=CGI_10014199; scaffold753 WUBlastX LINE_RTE-X 151467 151982 228 + . . scaffold753 WUBlastX LINE_RTE-X 151467 152114 221 + . . scaffold753 WUBlastX LINE_RTE-X 152149 152586 49 + . . scaffold753 WUBlastX LINE_RTE-X 152152 152463 70 + . . scaffold753 TRF Tandem_Repeat 152724 152749 52 + . . scaffold753 TRF Tandem_Repeat 157210 157393 283 + . . scaffold753 GLEAN promoter 161044 162043 0.74078 + . ID=CGI_10014201; scaffold753 GLEAN mRNA 162044 180707 0.74078 + . ID=CGI_10014201; scaffold753 TRF Tandem_Repeat 165546 165608 126 + . . scaffold753 TRF Tandem_Repeat 168195 168251 98 + . . scaffold753 TRF Tandem_Repeat 175963 176003 82 + . . scaffold753 GLEAN mRNA 183158 186839 0.999572 - . ID=CGI_10014202; scaffold753 TRF Tandem_Repeat 184752 184789 58 + . . scaffold753 GLEAN promoter 186840 187839 0.999572 - . ID=CGI_10014202; scaffold753 GLEAN mRNA 188938 189370 1 - . ID=CGI_10014203; scaffold753 GLEAN promoter 189371 190370 1 - . ID=CGI_10014203; scaffold753 WUBlastX LINE_L1-Tx1 189756 189914 85 + . . scaffold753 TRF Tandem_Repeat 207130 207179 100 + . . scaffold753 GLEAN promoter 210203 211202 0.718532 + . ID=CGI_10014204; scaffold753 GLEAN mRNA 211203 212480 0.718532 + . ID=CGI_10014204; scaffold753 TRF Tandem_Repeat 212626 212659 68 + . . scaffold753 GLEAN promoter 214220 215219 0.499527 + . ID=CGI_10014205; scaffold753 GLEAN mRNA 215220 220826 0.499527 + . ID=CGI_10014205; scaffold753 TRF Tandem_Repeat 216259 216373 106 + . . scaffold753 GLEAN promoter 223056 224055 0.338017 + . ID=CGI_10014206; scaffold753 TRF Tandem_Repeat 223484 223858 403 + . . scaffold753 GLEAN mRNA 224056 235787 0.338017 + . ID=CGI_10014206; scaffold753 TRF Tandem_Repeat 240601 241261 668 + . . scaffold753 TRF Tandem_Repeat 240601 241261 629 + . . scaffold753 WUBlastX LINE_L2 241459 241545 20 + . . scaffold753 WUBlastX LINE_L2 241657 242649 140 + . . scaffold753 WUBlastX LINE_L2 241819 242652 170 + . . scaffold753 TRF Tandem_Repeat 244258 244298 82 + . . scaffold753 GLEAN promoter 257245 258244 0.973512 + . ID=CGI_10014207; scaffold753 GLEAN mRNA 258245 265376 0.973512 + . ID=CGI_10014207; scaffold753 TRF Tandem_Repeat 270815 270848 68 + . . scaffold753 TRF Tandem_Repeat 270885 270952 136 + . . scaffold753 WUBlastX LINE_L2 280091 280264 28 + . . scaffold753 TRF Tandem_Repeat 285791 285852 124 + . . scaffold753 TRF Tandem_Repeat 289257 289297 82 + . . scaffold753 WUBlastX LINE_L2 290897 291376 60 - . . scaffold753 WUBlastX LINE_CR1-L2 291207 291947 103 - . . scaffold753 WUBlastX LINE_CR1-L2 291396 291734 205 - . . scaffold753 WUBlastX LINE_L2 291399 291947 134 - . . scaffold753 WUBlastX LINE_Penelope 291866 292015 40 + . . scaffold753 TRF Tandem_Repeat 293486 293532 94 + . . scaffold753 WUBlastX LINE_RTE-X 297143 297364 65 + . . scaffold753 GLEAN mRNA 300621 302015 0.828493 - . ID=CGI_10014208; scaffold753 GLEAN promoter 302016 303015 0.828493 - . ID=CGI_10014208; scaffold753 TRF Tandem_Repeat 303108 303225 126 + . . scaffold753 GLEAN promoter 304036 305035 0.999228 + . ID=CGI_10014209; scaffold753 GLEAN mRNA 305036 306849 0.999228 + . ID=CGI_10014209; scaffold753 WUBlastX DNA_hAT 305120 305293 53 + . . scaffold753 WUBlastX DNA_hAT 305695 306210 57 + . . scaffold753 GLEAN promoter 306757 307756 0.499275 + . ID=CGI_10014210; scaffold753 GLEAN mRNA 307757 329663 0.499275 + . ID=CGI_10014210; scaffold753 WUBlastX LINE_RTE-X 313050 313820 175 - . . scaffold753 WUBlastX LINE_RTE-X 313191 316439 986 - . . scaffold753 WUBlastX LINE_CR1 316110 316721 33 - . . scaffold753 WUBlastX LINE_L1 316608 317237 244 - . . scaffold753 WUBlastX LINE_L1 316632 317348 54 - . . scaffold753 TRF Tandem_Repeat 320986 321023 76 + . . scaffold753 GLEAN promoter 333095 334094 0.653552 + . ID=CGI_10014211; scaffold753 GLEAN mRNA 334095 339374 0.653552 + . ID=CGI_10014211; scaffold753 TRF Tandem_Repeat 334285 334321 53 + . . scaffold753 TRF Tandem_Repeat 334606 335058 519 + . . scaffold753 TRF Tandem_Repeat 334607 335058 552 + . . scaffold753 TRF Tandem_Repeat 334607 335058 602 + . . scaffold753 TRF Tandem_Repeat 335691 335887 250 + . . scaffold753 TRF Tandem_Repeat 335691 335886 239 + . . scaffold753 GLEAN promoter 339502 340501 0.994247 + . ID=CGI_10014212; scaffold753 GLEAN mRNA 340502 350820 0.994247 + . ID=CGI_10014212; scaffold753 TRF Tandem_Repeat 344951 345012 90 + . . scaffold753 TRF Tandem_Repeat 346233 347483 1746 + . . scaffold753 GLEAN promoter 351571 352570 0.60926 + . ID=CGI_10014213; scaffold753 GLEAN mRNA 352571 353735 0.60926 + . ID=CGI_10014213; scaffold753 WUBlastX LINE_L2 354837 354890 25 + . . scaffold753 WUBlastX LINE_CR1 355807 355881 21 + . . scaffold753 WUBlastX LINE_CR1 355891 356220 74 + . . scaffold753 WUBlastX LINE_L2 355948 356232 159 + . . scaffold753 WUBlastX LINE_CR1-L2 355984 356304 132 + . . scaffold753 WUBlastX LINE_CR1 355993 356220 161 + . . scaffold753 WUBlastX LINE_L2 356220 356777 118 + . . scaffold753 WUBlastX LINE_L2 356444 356950 151 + . . scaffold753 WUBlastX LINE_L2 356953 357384 104 + . . scaffold753 GLEAN promoter 358701 359700 0.99969 + . ID=CGI_10014214; scaffold753 GLEAN mRNA 359701 374036 0.99969 + . ID=CGI_10014214; scaffold753 TRF Tandem_Repeat 364806 365089 523 + . . scaffold753 TRF Tandem_Repeat 366867 367050 206 + . . scaffold753 TRF Tandem_Repeat 367984 368167 206 + . . scaffold753 TRF Tandem_Repeat 369119 370141 1328 + . . scaffold753 TRF Tandem_Repeat 369119 370141 1283 + . . scaffold753 TRF Tandem_Repeat 369119 370148 1366 + . . scaffold753 TRF Tandem_Repeat 370855 371209 487 + . . scaffold753 TRF Tandem_Repeat 372301 372632 400 + . . scaffold753 TRF Tandem_Repeat 379199 379371 206 + . . scaffold753 TRF Tandem_Repeat 379372 379509 231 + . . scaffold753 TRF Tandem_Repeat 380558 380671 221 + . . scaffold753 TRF Tandem_Repeat 383066 384591 493 + . . scaffold753 TRF Tandem_Repeat 387295 387359 130 + . . scaffold754 TRF Tandem_Repeat 6194 6249 67 + . . scaffold754 TRF Tandem_Repeat 16460 16497 76 + . . scaffold754 GLEAN mRNA 17794 21412 1 - . ID=CGI_10014061; scaffold754 GLEAN promoter 21413 22412 1 - . ID=CGI_10014061; scaffold754 WUBlastX LINE_RTE-X 22025 22321 80 - . . scaffold754 WUBlastX LINE_RTE-X 22145 22315 110 - . . scaffold754 WUBlastX LINE_RTE-X 22318 23805 221 - . . scaffold754 WUBlastX LINE_L1 23887 24828 53 - . . scaffold754 WUBlastX LINE_L1 23911 24690 256 - . . scaffold754 GLEAN promoter 33463 34462 0.401358 + . ID=CGI_10014062; scaffold754 GLEAN mRNA 34463 47005 0.401358 + . ID=CGI_10014062; scaffold754 WUBlastX DNA_Academ 35415 36332 374 + . . scaffold754 TRF Tandem_Repeat 41018 41061 88 + . . scaffold754 WUBlastX LINE_L2 44092 45081 360 + . . scaffold754 WUBlastX LINE_L2 45063 45380 111 + . . scaffold754 WUBlastX LINE_L2 46790 47728 220 + . . scaffold754 GLEAN promoter 48027 49026 0.991247 + . ID=CGI_10014063; scaffold754 GLEAN mRNA 49027 51535 0.991247 + . ID=CGI_10014063; scaffold754 TRF Tandem_Repeat 54106 54144 78 + . . scaffold754 TRF Tandem_Repeat 55969 55996 56 + . . scaffold754 GLEAN promoter 56012 57011 0.736028 + . ID=CGI_10014064; scaffold754 GLEAN mRNA 57012 59027 0.736028 + . ID=CGI_10014064; scaffold754 TRF Tandem_Repeat 60943 61046 136 + . . scaffold754 TRF Tandem_Repeat 60943 61200 177 + . . scaffold754 WUBlastX LINE_L1 72376 72627 56 + . . scaffold754 WUBlastX LINE_L1 72451 72714 53 + . . scaffold754 GLEAN promoter 73825 74824 0.982895 + . ID=CGI_10014065; scaffold754 GLEAN mRNA 74825 78333 0.982895 + . ID=CGI_10014065; scaffold754 TRF Tandem_Repeat 80316 80356 73 + . . scaffold754 GLEAN mRNA 80980 82191 0.999985 - . ID=CGI_10014066; scaffold754 GLEAN promoter 82192 83191 0.999985 - . ID=CGI_10014066; scaffold754 TRF Tandem_Repeat 82449 84082 2241 + . . scaffold754 TRF Tandem_Repeat 82449 84082 2289 + . . scaffold754 TRF Tandem_Repeat 86364 86417 99 + . . scaffold754 WUBlastX LINE_L1-Tx1 93345 93815 187 - . . scaffold754 WUBlastX LINE_L1-Tx1 93811 94068 68 - . . scaffold754 WUBlastX LINE_RTE-X 104592 104777 20 - . . scaffold754 WUBlastX LINE_RTE-X 104801 104872 27 - . . scaffold754 WUBlastX LTR_Ngaro 118012 118254 127 + . . scaffold754 WUBlastX LTR_Ngaro 118564 119619 258 + . . scaffold754 WUBlastX LTR_Ngaro 119624 120079 211 + . . scaffold754 WUBlastX LTR_Ngaro 120293 121021 248 + . . scaffold754 GLEAN mRNA 139769 141980 1 - . ID=CGI_10014067; scaffold754 WUBlastX DNA_IS4EU 140686 140859 45 + . . scaffold754 WUBlastX DNA_Kolobok-IS4 140903 141508 157 + . . scaffold754 WUBlastX DNA_IS4EU 140996 141523 173 + . . scaffold754 WUBlastX DNA_IS4EU 141008 141676 47 + . . scaffold754 GLEAN promoter 141981 142980 1 - . ID=CGI_10014067; scaffold754 GLEAN promoter 144797 145796 1 + . ID=CGI_10014068; scaffold754 GLEAN mRNA 145797 151057 1 + . ID=CGI_10014068; scaffold754 GLEAN mRNA 153938 155921 1 - . ID=CGI_10014069; scaffold754 TRF Tandem_Repeat 155237 155285 98 + . . scaffold754 GLEAN promoter 155922 156921 1 - . ID=CGI_10014069; scaffold754 TRF Tandem_Repeat 158899 159177 329 + . . scaffold754 TRF Tandem_Repeat 159271 159361 87 + . . scaffold754 GLEAN mRNA 160850 163562 0.5 - . ID=CGI_10014070; scaffold754 GLEAN promoter 163563 164562 0.5 - . ID=CGI_10014070; scaffold754 TRF Tandem_Repeat 164374 164484 52 + . . scaffold754 TRF Tandem_Repeat 164374 164440 52 + . . scaffold754 GLEAN mRNA 165057 170878 1 - . ID=CGI_10014071; scaffold754 TRF Tandem_Repeat 165761 165795 70 + . . scaffold754 GLEAN promoter 170879 171878 1 - . ID=CGI_10014071; scaffold754 GLEAN mRNA 173002 177378 1 - . ID=CGI_10014072; scaffold754 TRF Tandem_Repeat 174802 174833 64 + . . scaffold754 GLEAN promoter 177379 178378 1 - . ID=CGI_10014072; scaffold754 TRF Tandem_Repeat 178294 178480 306 + . . scaffold754 GLEAN mRNA 181142 187486 1 - . ID=CGI_10014073; scaffold754 TRF Tandem_Repeat 183533 183585 76 + . . scaffold754 TRF Tandem_Repeat 183539 183586 60 + . . scaffold754 GLEAN promoter 187487 188486 1 - . ID=CGI_10014073; scaffold754 GLEAN promoter 200141 201140 1 + . ID=CGI_10014074; scaffold754 GLEAN mRNA 201141 205411 1 + . ID=CGI_10014074; scaffold754 GLEAN promoter 204786 205785 1 + . ID=CGI_10014075; scaffold754 GLEAN mRNA 205786 211482 1 + . ID=CGI_10014075; scaffold754 TRF Tandem_Repeat 207128 207197 140 + . . scaffold754 WUBlastX LINE_L2 232491 233183 30 - . . scaffold754 WUBlastX LINE_CR1-L2 232782 233348 28 - . . scaffold754 GLEAN mRNA 238633 239952 0.593389 - . ID=CGI_10014076; scaffold754 GLEAN promoter 239953 240952 0.593389 - . ID=CGI_10014076; scaffold754 TRF Tandem_Repeat 242805 242846 77 + . . scaffold754 TRF Tandem_Repeat 243403 243463 122 + . . scaffold754 GLEAN mRNA 249152 250426 0.999995 - . ID=CGI_10014077; scaffold754 GLEAN promoter 250427 251426 0.999995 - . ID=CGI_10014077; scaffold754 WUBlastX LINE_RTE-X 258025 258123 66 + . . scaffold754 GLEAN mRNA 259627 268954 0.999999 - . ID=CGI_10014078; scaffold754 GLEAN promoter 268955 269954 0.999999 - . ID=CGI_10014078; scaffold754 GLEAN promoter 288108 289107 0.99935 + . ID=CGI_10014079; scaffold754 GLEAN mRNA 289108 303428 0.99935 + . ID=CGI_10014079; scaffold754 TRF Tandem_Repeat 298119 298219 159 + . . scaffold754 WUBlastX LINE_L1 308590 308775 50 + . . scaffold754 GLEAN promoter 309344 310343 1 + . ID=CGI_10014080; scaffold754 GLEAN mRNA 310344 318005 1 + . ID=CGI_10014080; scaffold754 TRF Tandem_Repeat 314559 317626 2327 + . . scaffold754 GLEAN mRNA 321153 352954 0.341505 - . ID=CGI_10014081; scaffold754 TRF Tandem_Repeat 340172 340225 108 + . . scaffold754 TRF Tandem_Repeat 343824 343858 61 + . . scaffold754 TRF Tandem_Repeat 344998 345041 52 + . . scaffold754 TRF Tandem_Repeat 344999 345048 64 + . . scaffold754 TRF Tandem_Repeat 345218 346228 1559 + . . scaffold754 GLEAN promoter 352955 353954 0.341505 - . ID=CGI_10014081; scaffold754 GLEAN promoter 353379 354378 1 + . ID=CGI_10014082; scaffold754 GLEAN mRNA 354379 361016 1 + . ID=CGI_10014082; scaffold754 TRF Tandem_Repeat 364408 364462 101 + . . scaffold754 GLEAN mRNA 365234 377245 0.878952 - . ID=CGI_10014083; scaffold754 GLEAN promoter 372663 373662 1 + . ID=CGI_10014084; scaffold754 GLEAN mRNA 373663 377872 1 + . ID=CGI_10014084; scaffold754 GLEAN promoter 377246 378245 0.878952 - . ID=CGI_10014083; scaffold754 GLEAN mRNA 380306 385329 0.889672 - . ID=CGI_10014085; scaffold754 GLEAN promoter 384176 385175 1 + . ID=CGI_10014086; scaffold754 TRF Tandem_Repeat 384371 384408 76 + . . scaffold754 GLEAN mRNA 385176 386012 1 + . ID=CGI_10014086; scaffold754 GLEAN promoter 385330 386179 0.889672 - . ID=CGI_10014085; scaffold754 TRF Tandem_Repeat 386049 386080 55 + . . scaffold756 GLEAN mRNA 511 17004 0.701124 - . ID=CGI_10016448; scaffold756 GLEAN promoter 17005 18004 0.701124 - . ID=CGI_10016448; scaffold756 TRF Tandem_Repeat 20657 20703 94 + . . scaffold756 TRF Tandem_Repeat 20849 21219 315 + . . scaffold756 TRF Tandem_Repeat 20849 21219 293 + . . scaffold756 TRF Tandem_Repeat 20850 21219 339 + . . scaffold756 TRF Tandem_Repeat 20851 21219 461 + . . scaffold756 TRF Tandem_Repeat 21895 22148 402 + . . scaffold756 TRF Tandem_Repeat 22728 22785 116 + . . scaffold756 TRF Tandem_Repeat 24746 24811 123 + . . scaffold756 GLEAN promoter 26745 27744 0.999372 + . ID=CGI_10016449; scaffold756 GLEAN mRNA 27745 27975 0.999372 + . ID=CGI_10016449; scaffold756 GLEAN promoter 29445 30444 1 + . ID=CGI_10016450; scaffold756 GLEAN mRNA 30445 40545 1 + . ID=CGI_10016450; scaffold756 TRF Tandem_Repeat 35480 35525 51 + . . scaffold756 TRF Tandem_Repeat 40008 40056 98 + . . scaffold756 GLEAN mRNA 42247 48754 0.998504 - . ID=CGI_10016451; scaffold756 GLEAN promoter 48755 49754 0.998504 - . ID=CGI_10016451; scaffold756 GLEAN promoter 51167 52166 1 + . ID=CGI_10016452; scaffold756 GLEAN mRNA 52167 53093 1 + . ID=CGI_10016452; scaffold756 GLEAN mRNA 56633 79086 1 - . ID=CGI_10016453; scaffold756 TRF Tandem_Repeat 73613 73959 398 + . . scaffold756 TRF Tandem_Repeat 74624 74926 336 + . . scaffold756 TRF Tandem_Repeat 74624 74926 318 + . . scaffold756 TRF Tandem_Repeat 74624 74928 380 + . . scaffold756 TRF Tandem_Repeat 76418 76583 219 + . . scaffold756 GLEAN promoter 79087 80086 1 - . ID=CGI_10016453; scaffold756 GLEAN promoter 82079 83078 0.999999 + . ID=CGI_10016454; scaffold756 GLEAN mRNA 83079 85694 0.999999 + . ID=CGI_10016454; scaffold756 GLEAN mRNA 86159 95880 1 - . ID=CGI_10016455; scaffold756 TRF Tandem_Repeat 87146 87186 82 + . . scaffold756 TRF Tandem_Repeat 88330 88373 88 + . . scaffold756 GLEAN promoter 95881 96880 1 - . ID=CGI_10016455; scaffold756 TRF Tandem_Repeat 100486 100531 92 + . . scaffold756 TRF Tandem_Repeat 102924 102986 126 + . . scaffold756 TRF Tandem_Repeat 104162 104187 52 + . . scaffold756 TRF Tandem_Repeat 106299 106337 78 + . . scaffold756 TRF Tandem_Repeat 114684 114717 50 + . . scaffold756 WUBlastX LINE_L1-Tx1 120006 120308 83 - . . scaffold756 WUBlastX LINE_L1-Tx1 120069 120302 102 - . . scaffold756 TRF Tandem_Repeat 147807 147875 111 + . . scaffold756 TRF Tandem_Repeat 155266 155316 52 + . . scaffold756 GLEAN promoter 158458 159457 0.985977 + . ID=CGI_10016456; scaffold756 GLEAN mRNA 159458 160042 0.985977 + . ID=CGI_10016456; scaffold756 GLEAN mRNA 161123 163501 0.507075 - . ID=CGI_10016457; scaffold756 GLEAN promoter 163502 164501 0.507075 - . ID=CGI_10016457; scaffold756 WUBlastX DNA_TcMar-Marin 166374 166499 27 + . . scaffold756 WUBlastX DNA_TcMar-Marin 166639 167262 124 + . . scaffold756 GLEAN promoter 173962 174961 0.721563 + . ID=CGI_10016458; scaffold756 TRF Tandem_Repeat 174175 174494 159 + . . scaffold756 TRF Tandem_Repeat 174175 174451 195 + . . scaffold756 TRF Tandem_Repeat 174186 174451 238 + . . scaffold756 GLEAN mRNA 174962 194451 0.721563 + . ID=CGI_10016458; scaffold756 WUBlastX LTR_Pao 179720 180355 683 - . . scaffold756 WUBlastX LTR_Pao 180315 180770 170 - . . scaffold756 WUBlastX LTR_Pao 180333 180701 388 - . . scaffold756 TRF Tandem_Repeat 187376 187400 50 + . . scaffold756 TRF Tandem_Repeat 187554 187619 125 + . . scaffold756 WUBlastX DNA_Maverick 196625 196903 45 + . . scaffold756 WUBlastX DNA_Maverick 196664 196888 116 + . . scaffold756 WUBlastX DNA_Maverick 196933 197067 42 + . . scaffold756 WUBlastX DNA_Maverick 196933 197037 46 + . . scaffold756 WUBlastX DNA_Maverick 196933 197094 34 + . . scaffold756 GLEAN promoter 197446 198445 0.999995 + . ID=CGI_10016459; scaffold756 GLEAN mRNA 198446 199162 0.999995 + . ID=CGI_10016459; scaffold756 GLEAN promoter 201352 202351 0.354252 + . ID=CGI_10016460; scaffold756 TRF Tandem_Repeat 201489 201535 85 + . . scaffold756 GLEAN mRNA 202352 228546 0.354252 + . ID=CGI_10016460; scaffold756 TRF Tandem_Repeat 205803 205852 100 + . . scaffold756 TRF Tandem_Repeat 207751 208094 634 + . . scaffold756 TRF Tandem_Repeat 209736 210034 319 + . . scaffold756 TRF Tandem_Repeat 209736 210024 342 + . . scaffold756 TRF Tandem_Repeat 221069 221167 76 + . . scaffold756 TRF Tandem_Repeat 230793 230822 51 + . . scaffold756 GLEAN promoter 232283 233282 0.261655 + . ID=CGI_10016461; scaffold756 GLEAN mRNA 233283 244530 0.261655 + . ID=CGI_10016461; scaffold756 TRF Tandem_Repeat 238118 238217 97 + . . scaffold756 WUBlastX DNA_Maverick 241208 241513 70 + . . scaffold756 WUBlastX DNA_Maverick 241208 241459 75 + . . scaffold756 TRF Tandem_Repeat 242974 243021 78 + . . scaffold756 WUBlastX LTR_Gypsy 245144 245431 30 - . . scaffold756 WUBlastX LTR_ERV1 245201 245683 38 - . . scaffold756 WUBlastX LTR_ERV1 245225 245596 74 - . . scaffold756 WUBlastX LTR_Gypsy 247365 248423 929 - . . scaffold756 WUBlastX LTR_Gypsy 248426 249118 381 - . . scaffold756 WUBlastX LTR_Gypsy 249028 249597 210 - . . scaffold756 WUBlastX LTR_Gypsy 249109 249735 141 - . . scaffold756 TRF Tandem_Repeat 251071 251098 56 + . . scaffold756 WUBlastX LINE_L2 253981 254106 53 + . . scaffold756 WUBlastX LINE_L2 254102 254365 76 + . . scaffold756 GLEAN mRNA 256002 257615 0.996819 - . ID=CGI_10016462; scaffold756 GLEAN promoter 257616 258615 0.996819 - . ID=CGI_10016462; scaffold756 WUBlastX LTR_Gypsy 259936 260127 61 - . . scaffold756 WUBlastX LTR_Gypsy 260114 260440 78 - . . scaffold756 WUBlastX LTR_Gypsy 260123 260323 127 - . . scaffold756 WUBlastX LINE_L2 286968 287333 27 - . . scaffold756 TRF Tandem_Repeat 293649 294977 1906 + . . scaffold756 GLEAN mRNA 300470 311180 0.993908 - . ID=CGI_10016463; scaffold756 TRF Tandem_Repeat 301653 301736 161 + . . scaffold756 TRF Tandem_Repeat 310277 310368 89 + . . scaffold756 TRF Tandem_Repeat 310447 310604 160 + . . scaffold756 TRF Tandem_Repeat 310834 310927 91 + . . scaffold756 GLEAN promoter 311181 312180 0.993908 - . ID=CGI_10016463; scaffold756 TRF Tandem_Repeat 312059 312092 50 + . . scaffold756 WUBlastX DNA_Merlin 312175 312441 98 + . . scaffold756 TRF Tandem_Repeat 316693 316723 53 + . . scaffold756 TRF Tandem_Repeat 336610 336652 50 + . . scaffold756 TRF Tandem_Repeat 341663 341694 64 + . . scaffold756 GLEAN mRNA 341736 353437 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX DNA_IS4EU 342731 342898 44 - . . scaffold756 WUBlastX DNA_Kolobok-IS4 343020 343568 67 - . . scaffold756 WUBlastX DNA_IS4EU 343080 343727 62 - . . scaffold756 WUBlastX DNA_IS4EU 343080 343475 91 - . . scaffold756 WUBlastX LTR_Gypsy 352911 353207 28 - . . scaffold756 WUBlastX LTR_Gypsy 353009 354403 277 - . . scaffold756 WUBlastX LTR_Gypsy 353249 355486 771 - . . scaffold756 GLEAN promoter 353438 354437 0.789635 - . ID=CGI_10016464; scaffold756 WUBlastX LTR_Gypsy 354155 355540 942 - . . scaffold756 WUBlastX LTR_Gypsy 355537 355950 138 - . . scaffold756 WUBlastX LTR_Gypsy 355917 356648 103 - . . scaffold756 WUBlastX LTR_Gypsy 355938 356513 293 - . . scaffold756 GLEAN mRNA 361885 367608 0.999351 - . ID=CGI_10016465; scaffold756 GLEAN promoter 367609 368608 0.999351 - . ID=CGI_10016465; scaffold756 TRF Tandem_Repeat 370976 371047 135 + . . scaffold756 TRF Tandem_Repeat 379652 379712 122 + . . scaffold756 WUBlastX DNA_Harbinger 404842 405312 253 + . . scaffold756 WUBlastX DNA_Harbinger 405442 405822 159 - . . scaffold756 TRF Tandem_Repeat 410917 410946 60 + . . scaffold756 GLEAN mRNA 412445 424957 0.468321 - . ID=CGI_10016466; scaffold756 TRF Tandem_Repeat 418842 420022 1280 + . . scaffold756 WUBlastX LINE_L2 421292 421531 32 - . . scaffold756 WUBlastX LINE_L2 421536 422210 308 - . . scaffold756 WUBlastX LINE_L2 422207 422722 313 - . . scaffold756 WUBlastX LINE_L2 422676 423317 373 - . . scaffold756 WUBlastX LINE_L2 423314 423811 36 - . . scaffold756 WUBlastX LINE_L2 423332 423931 27 - . . scaffold756 WUBlastX LINE_L2 423338 423742 143 - . . scaffold756 GLEAN promoter 424958 425957 0.468321 - . ID=CGI_10016466; scaffold756 GLEAN mRNA 435099 464068 0.998247 - . ID=CGI_10016467; scaffold756 TRF Tandem_Repeat 435625 435715 146 + . . scaffold756 TRF Tandem_Repeat 437214 437332 110 + . . scaffold756 TRF Tandem_Repeat 437215 437378 127 + . . scaffold756 WUBlastX LINE_L2 454387 455967 936 - . . scaffold756 WUBlastX LINE_I 456448 456489 23 - . . scaffold756 TRF Tandem_Repeat 457111 457155 72 + . . scaffold756 GLEAN promoter 464069 464141 0.998247 - . ID=CGI_10016467; scaffold759 GLEAN promoter 3045 4044 0.617944 + . ID=CGI_10010772; scaffold759 GLEAN mRNA 4045 5760 0.617944 + . ID=CGI_10010772; scaffold759 TRF Tandem_Repeat 6716 6803 149 + . . scaffold759 TRF Tandem_Repeat 8647 8718 144 + . . scaffold759 WUBlastX LTR_Ngaro 12920 13330 45 - . . scaffold759 WUBlastX LTR_Ngaro 12986 13330 150 - . . scaffold759 WUBlastX LTR_Ngaro 13067 13378 161 - . . scaffold759 TRF Tandem_Repeat 16878 16944 71 + . . scaffold759 TRF Tandem_Repeat 19143 19209 80 + . . scaffold759 TRF Tandem_Repeat 20133 20205 146 + . . scaffold759 TRF Tandem_Repeat 20622 20675 90 + . . scaffold759 TRF Tandem_Repeat 22117 22151 70 + . . scaffold759 TRF Tandem_Repeat 22532 22582 52 + . . scaffold759 TRF Tandem_Repeat 27696 27763 136 + . . scaffold759 GLEAN promoter 28420 29419 0.999676 + . ID=CGI_10010773; scaffold759 GLEAN mRNA 29420 39917 0.999676 + . ID=CGI_10010773; scaffold759 TRF Tandem_Repeat 34508 34536 58 + . . scaffold759 TRF Tandem_Repeat 38417 38636 69 + . . scaffold759 GLEAN promoter 39915 40914 0.999673 + . ID=CGI_10010774; scaffold759 GLEAN mRNA 40915 55637 0.999673 + . ID=CGI_10010774; scaffold759 TRF Tandem_Repeat 61308 61414 124 + . . scaffold759 TRF Tandem_Repeat 62951 63041 137 + . . scaffold759 WUBlastX DNA_hAT-Ac 72378 72593 72 + . . scaffold759 WUBlastX DNA_hAT-Ac 72590 72697 71 + . . scaffold759 WUBlastX DNA_hAT-Ac 72697 73086 121 + . . scaffold759 WUBlastX DNA_hAT-Ac 73082 73192 31 + . . scaffold759 WUBlastX DNA_hAT-Ac 73549 73776 47 + . . scaffold759 WUBlastX DNA_hAT-Ac 73705 73800 43 + . . scaffold759 WUBlastX LINE_L2 74116 74376 31 + . . scaffold759 WUBlastX LINE_CR1 74140 74349 44 + . . scaffold759 WUBlastX LINE_L2 74451 74690 32 + . . scaffold759 WUBlastX LINE_L2 74496 74729 59 + . . scaffold759 WUBlastX LINE_L2 74693 75106 118 + . . scaffold759 WUBlastX LINE_L2 74744 75082 256 + . . scaffold759 WUBlastX LINE_L2 75039 75284 82 + . . scaffold759 WUBlastX LINE_L2 75220 75459 50 + . . scaffold759 WUBlastX LINE_L2 75220 75516 28 + . . scaffold759 WUBlastX LINE_Jockey 76040 76336 23 + . . scaffold759 WUBlastX LINE_L2 76085 76537 26 + . . scaffold759 WUBlastX LINE_L2 76163 76297 39 + . . scaffold759 WUBlastX LINE_L2 76166 76270 56 + . . scaffold759 WUBlastX LINE_L2 76199 76438 35 + . . scaffold759 TRF Tandem_Repeat 77232 77271 53 + . . scaffold759 TRF Tandem_Repeat 77302 78593 1902 + . . scaffold759 TRF Tandem_Repeat 79130 79864 769 + . . scaffold759 WUBlastX LINE_CR1 80831 81052 62 + . . scaffold759 WUBlastX LINE_CR1-L2 81126 81338 73 + . . scaffold759 WUBlastX LINE_RTE-X 81171 81341 90 + . . scaffold759 TRF Tandem_Repeat 87327 87368 75 + . . scaffold759 WUBlastX LTR_Copia 93962 94009 21 - . . scaffold759 WUBlastX LTR_Gypsy 94266 94319 22 - . . scaffold759 WUBlastX LTR_Gypsy 94652 95539 119 - . . scaffold759 WUBlastX LTR_Gypsy 94856 95326 248 - . . scaffold759 WUBlastX LTR_Gypsy 95319 96017 433 - . . scaffold759 WUBlastX LTR_Gypsy 95379 96425 95 - . . scaffold759 WUBlastX LTR_Gypsy 96755 97861 247 - . . scaffold759 WUBlastX LTR_Gypsy 96962 97861 418 - . . scaffold759 WUBlastX LTR_Gypsy 97444 99024 358 - . . scaffold759 WUBlastX LTR_Gypsy-Cigr 97996 99936 193 - . . scaffold759 WUBlastX LTR_Gypsy 99598 100113 95 - . . scaffold759 GLEAN promoter 100001 101000 0.957564 + . ID=CGI_10010775; scaffold759 GLEAN mRNA 101001 103047 0.957564 + . ID=CGI_10010775; scaffold759 WUBlastX LTR_Gypsy-Cigr 101799 102596 62 + . . scaffold759 WUBlastX LTR_Gypsy 101958 102632 68 + . . scaffold759 WUBlastX LTR_Gypsy 102138 102866 123 + . . scaffold759 WUBlastX LTR_Gypsy 103055 103408 33 + . . scaffold759 WUBlastX LTR_Gypsy-Cigr 103438 104895 658 + . . scaffold759 WUBlastX LTR_Gypsy 104792 105232 317 + . . scaffold759 WUBlastX LTR_Gypsy-Gmr1 105223 105255 27 + . . scaffold759 WUBlastX LTR_ERV1 105440 105496 20 + . . scaffold759 WUBlastX LTR_Gypsy 105710 105760 24 + . . scaffold759 WUBlastX DNA_hAT-Tip100 105810 106400 182 + . . scaffold759 TRF Tandem_Repeat 106473 106601 77 + . . scaffold759 TRF Tandem_Repeat 106473 106601 77 + . . scaffold759 WUBlastX LTR_Gypsy 106658 107440 135 + . . scaffold759 WUBlastX LTR_Gypsy 106796 107431 150 + . . scaffold759 WUBlastX LTR_Gypsy 106898 107440 295 + . . scaffold759 WUBlastX LTR_Gypsy 107102 107518 72 + . . scaffold759 WUBlastX LTR_Gypsy 107530 107769 28 + . . scaffold759 WUBlastX LTR_Gypsy 107569 107844 22 + . . scaffold759 WUBlastX LTR_Gypsy 107882 107926 23 + . . scaffold759 WUBlastX DNA_P 115554 115808 78 + . . scaffold759 WUBlastX DNA_Kolobok-IS4 115554 116072 33 + . . scaffold759 WUBlastX DNA_P 115554 115880 41 + . . scaffold759 WUBlastX DNA_IS4EU 116451 117236 373 + . . scaffold759 WUBlastX DNA_Kolobok-IS4 117206 117319 29 + . . scaffold759 WUBlastX DNA_IS4EU 118227 118982 68 - . . scaffold759 WUBlastX DNA_IS4EU 118366 118599 73 - . . scaffold759 WUBlastX DNA_Kolobok-IS4 119116 119346 71 - . . scaffold759 WUBlastX LTR_Gypsy-Cigr 129658 130683 500 - . . scaffold759 WUBlastX LTR_Gypsy-Cigr 130599 131426 457 - . . scaffold759 WUBlastX LTR_Gypsy 131248 131490 136 - . . scaffold759 WUBlastX LTR_Gypsy-Cigr 131580 131666 28 - . . scaffold759 WUBlastX LTR_Gypsy-Cigr 131751 131837 22 - . . scaffold759 WUBlastX LTR_Gypsy 132086 132364 89 - . . scaffold759 WUBlastX LTR_Gypsy 132170 132514 105 - . . scaffold759 WUBlastX LTR_Gypsy 132188 132382 160 - . . scaffold759 WUBlastX LTR_Gypsy 132188 132448 110 - . . scaffold759 WUBlastX LTR_Gypsy 132390 132773 98 - . . scaffold759 WUBlastX LTR_Gypsy 132776 133189 68 - . . scaffold759 WUBlastX LTR_Gypsy 132971 133231 51 - . . scaffold759 WUBlastX LTR_Gypsy-Cigr 133231 133440 59 - . . scaffold759 WUBlastX LTR_Copia 133449 133718 38 - . . scaffold759 WUBlastX LTR_Gypsy-Cigr 133512 133997 48 - . . scaffold759 WUBlastX LTR_Gypsy-Cigr 134101 134247 62 - . . scaffold759 GLEAN promoter 154045 155044 0.535067 + . ID=CGI_10010776; scaffold759 GLEAN mRNA 155045 155920 0.535067 + . ID=CGI_10010776; scaffold759 TRF Tandem_Repeat 156830 157584 1102 + . . scaffold759 TRF Tandem_Repeat 157789 157826 58 + . . scaffold759 WUBlastX LTR_Ngaro 159409 159957 68 - . . scaffold759 TRF Tandem_Repeat 165893 166118 117 + . . scaffold759 TRF Tandem_Repeat 165955 166130 142 + . . scaffold759 TRF Tandem_Repeat 178447 178682 131 + . . scaffold759 TRF Tandem_Repeat 178510 178682 127 + . . scaffold759 TRF Tandem_Repeat 178714 178886 115 + . . scaffold759 GLEAN mRNA 180073 182096 0.994276 - . ID=CGI_10010777; scaffold759 GLEAN promoter 182097 183096 0.994276 - . ID=CGI_10010777; scaffold759 TRF Tandem_Repeat 184458 184511 108 + . . scaffold759 GLEAN mRNA 197172 201193 0.558201 - . ID=CGI_10010778; scaffold759 GLEAN promoter 200364 201363 0.999351 + . ID=CGI_10010779; scaffold759 GLEAN promoter 201194 202193 0.558201 - . ID=CGI_10010778; scaffold759 GLEAN mRNA 201364 233211 0.999351 + . ID=CGI_10010779; scaffold759 GLEAN mRNA 209029 218217 0.448425 - . ID=CGI_10010780; scaffold759 TRF Tandem_Repeat 212694 213293 745 + . . scaffold759 GLEAN promoter 218218 219217 0.448425 - . ID=CGI_10010780; scaffold759 TRF Tandem_Repeat 224206 224250 90 + . . scaffold759 GLEAN mRNA 240053 255917 0.998454 - . ID=CGI_10010781; scaffold759 TRF Tandem_Repeat 245043 245088 92 + . . scaffold759 TRF Tandem_Repeat 246690 246743 56 + . . scaffold759 WUBlastX LINE_RTE-X 247867 248406 105 - . . scaffold759 WUBlastX LINE_RTE-X 247993 248406 131 - . . scaffold759 TRF Tandem_Repeat 250023 250060 76 + . . scaffold759 TRF Tandem_Repeat 251775 251826 104 + . . scaffold759 GLEAN promoter 255918 256917 0.998454 - . ID=CGI_10010781; scaffold759 GLEAN mRNA 260070 260366 0.618241 - . ID=CGI_10010782; scaffold759 GLEAN promoter 260367 261366 0.618241 - . ID=CGI_10010782; scaffold759 TRF Tandem_Repeat 262693 262743 75 + . . scaffold759 TRF Tandem_Repeat 263451 263501 75 + . . scaffold759 TRF Tandem_Repeat 264209 264259 75 + . . scaffold759 TRF Tandem_Repeat 264967 265017 75 + . . scaffold759 TRF Tandem_Repeat 265725 265775 75 + . . scaffold759 TRF Tandem_Repeat 266483 266533 75 + . . scaffold759 TRF Tandem_Repeat 267241 267291 75 + . . scaffold759 TRF Tandem_Repeat 267999 268049 75 + . . scaffold759 TRF Tandem_Repeat 268757 268807 75 + . . scaffold759 TRF Tandem_Repeat 269515 269565 75 + . . scaffold759 TRF Tandem_Repeat 270273 270323 75 + . . scaffold759 TRF Tandem_Repeat 271031 271081 75 + . . scaffold759 TRF Tandem_Repeat 271789 271839 75 + . . scaffold759 TRF Tandem_Repeat 272547 272597 75 + . . scaffold759 TRF Tandem_Repeat 273305 273355 75 + . . scaffold759 TRF Tandem_Repeat 274063 274113 75 + . . scaffold76 GLEAN promoter 4107 5106 0.444919 + . ID=CGI_10009396; scaffold76 GLEAN mRNA 5107 18277 0.444919 + . ID=CGI_10009396; scaffold76 WUBlastX LTR_Gypsy 22032 23537 901 + . . scaffold76 WUBlastX LTR_Gypsy 22068 23273 1023 + . . scaffold76 WUBlastX LTR_ERVK 23280 23591 20 + . . scaffold76 TRF Tandem_Repeat 24450 24509 104 + . . scaffold76 WUBlastX LTR_Gypsy-Cigr 28172 28294 40 + . . scaffold76 WUBlastX LTR_Gypsy 28524 28928 320 + . . scaffold76 WUBlastX LTR_Gypsy 28861 29112 160 + . . scaffold76 WUBlastX LTR_Gypsy 28864 29073 219 + . . scaffold76 WUBlastX LINE_L1-Tx1 31379 31729 31 + . . scaffold76 TRF Tandem_Repeat 43367 43398 64 + . . scaffold76 TRF Tandem_Repeat 44701 44725 50 + . . scaffold76 TRF Tandem_Repeat 44804 44846 86 + . . scaffold76 GLEAN mRNA 45009 48634 0.544852 - . ID=CGI_10009397; scaffold76 GLEAN promoter 48635 49634 0.544852 - . ID=CGI_10009397; scaffold76 TRF Tandem_Repeat 50537 50608 99 + . . scaffold76 GLEAN mRNA 54872 67079 0.99992 - . ID=CGI_10009398; scaffold76 TRF Tandem_Repeat 56598 56684 79 + . . scaffold76 TRF Tandem_Repeat 57898 57941 88 + . . scaffold76 TRF Tandem_Repeat 61216 62099 1140 + . . scaffold76 TRF Tandem_Repeat 62837 62896 102 + . . scaffold76 TRF Tandem_Repeat 62962 63027 71 + . . scaffold76 GLEAN promoter 67080 68079 0.99992 - . ID=CGI_10009398; scaffold76 TRF Tandem_Repeat 77104 77771 860 + . . scaffold76 TRF Tandem_Repeat 77782 77824 50 + . . scaffold76 WUBlastX DNA_hAT-Blackja 78341 78637 35 - . . scaffold76 TRF Tandem_Repeat 87262 87291 60 + . . scaffold76 TRF Tandem_Repeat 88641 88678 67 + . . scaffold76 TRF Tandem_Repeat 101138 101483 559 + . . scaffold76 GLEAN promoter 102180 103179 0.999744 + . ID=CGI_10009399; scaffold76 GLEAN mRNA 103180 117969 0.999744 + . ID=CGI_10009399; scaffold76 TRF Tandem_Repeat 115867 115920 99 + . . scaffold76 GLEAN mRNA 117906 156990 0.613509 - . ID=CGI_10009400; scaffold76 TRF Tandem_Repeat 118975 119020 74 + . . scaffold76 TRF Tandem_Repeat 125996 126112 80 + . . scaffold76 TRF Tandem_Repeat 131034 132041 1152 + . . scaffold76 GLEAN promoter 156991 157990 0.613509 - . ID=CGI_10009400; scaffold76 TRF Tandem_Repeat 158824 158871 60 + . . scaffold76 TRF Tandem_Repeat 158827 158871 81 + . . scaffold76 GLEAN promoter 160425 161424 0.999898 + . ID=CGI_10009401; scaffold76 GLEAN mRNA 161425 163685 0.999898 + . ID=CGI_10009401; scaffold76 GLEAN promoter 162835 163834 0.998031 + . ID=CGI_10009402; scaffold76 GLEAN mRNA 163835 170118 0.998031 + . ID=CGI_10009402; scaffold76 GLEAN promoter 170017 171016 0.0674883 + . ID=CGI_10009404; scaffold76 GLEAN mRNA 171017 218588 0.0674883 + . ID=CGI_10009404; scaffold76 TRF Tandem_Repeat 183471 183527 53 + . . scaffold76 TRF Tandem_Repeat 184430 184467 76 + . . scaffold76 TRF Tandem_Repeat 187052 187098 94 + . . scaffold76 TRF Tandem_Repeat 190410 190486 57 + . . scaffold76 TRF Tandem_Repeat 190434 190489 58 + . . scaffold76 TRF Tandem_Repeat 200763 200808 92 + . . scaffold76 TRF Tandem_Repeat 204225 204260 63 + . . scaffold76 GLEAN mRNA 206944 210313 1 - . ID=CGI_10009405; scaffold76 GLEAN promoter 210314 211313 1 - . ID=CGI_10009405; scaffold76 GLEAN mRNA 221391 229684 0.999675 - . ID=CGI_10009406; scaffold76 TRF Tandem_Repeat 223996 224055 120 + . . scaffold76 WUBlastX LINE_RTE-X 225684 225980 25 + . . scaffold76 WUBlastX LINE_RTE-X 227550 227885 65 + . . scaffold76 WUBlastX LINE_RTE-X 227718 227921 52 + . . scaffold76 WUBlastX LINE_RTE-X 227718 227993 40 + . . scaffold76 GLEAN promoter 229685 229999 0.999675 - . ID=CGI_10009406; scaffold760 GLEAN mRNA 5307 5974 0.999922 - . ID=CGI_10023970; scaffold760 GLEAN promoter 5975 6974 0.999922 - . ID=CGI_10023970; scaffold760 GLEAN promoter 23977 24976 0.542387 + . ID=CGI_10023971; scaffold760 GLEAN mRNA 24977 27724 0.542387 + . ID=CGI_10023971; scaffold760 WUBlastX LTR_Gypsy 27785 28204 80 + . . scaffold760 WUBlastX LTR_Gypsy 27857 28315 82 + . . scaffold760 WUBlastX LTR_Gypsy 28261 28782 107 + . . scaffold760 WUBlastX LTR_Gypsy 28661 29356 212 + . . scaffold760 WUBlastX LTR_Gypsy 28766 29584 293 + . . scaffold760 WUBlastX LTR_Gypsy-Cigr 28766 29356 321 + . . scaffold760 WUBlastX LINE_L1 29405 29644 145 + . . scaffold760 WUBlastX LINE_L1 29655 29849 128 + . . scaffold760 WUBlastX LINE_L1-Tx1 29851 30201 160 + . . scaffold760 WUBlastX LINE_L1 30128 30235 22 + . . scaffold760 WUBlastX LTR_Gypsy 33242 33445 29 + . . scaffold760 WUBlastX LTR_Gypsy 33289 33372 37 + . . scaffold760 WUBlastX LTR_Gypsy 33443 33520 21 + . . scaffold760 WUBlastX LTR_Gypsy-Cigr 33477 33701 62 + . . scaffold760 WUBlastX LTR_Gypsy 33697 33801 22 + . . scaffold760 WUBlastX LINE_Penelope 49849 50076 28 + . . scaffold760 WUBlastX LINE_Penelope 49940 50326 49 + . . scaffold760 WUBlastX LINE_Penelope 50078 50308 65 + . . scaffold760 TRF Tandem_Repeat 51008 51034 54 + . . scaffold760 GLEAN promoter 51099 52098 0.36438 + . ID=CGI_10023972; scaffold760 GLEAN mRNA 52099 63915 0.36438 + . ID=CGI_10023972; scaffold760 TRF Tandem_Repeat 60815 60848 61 + . . scaffold760 TRF Tandem_Repeat 72180 72260 116 + . . scaffold760 GLEAN promoter 74415 75414 0.397512 + . ID=CGI_10023974; scaffold760 GLEAN mRNA 74846 75034 0.618241 - . ID=CGI_10023973; scaffold760 GLEAN promoter 75035 76034 0.618241 - . ID=CGI_10023973; scaffold760 GLEAN mRNA 75415 81482 0.397512 + . ID=CGI_10023974; scaffold760 TRF Tandem_Repeat 82101 82231 124 + . . scaffold760 TRF Tandem_Repeat 83379 83426 55 + . . scaffold760 TRF Tandem_Repeat 85268 85325 116 + . . scaffold760 GLEAN mRNA 100987 112997 0.999623 - . ID=CGI_10023975; scaffold760 GLEAN promoter 112998 113997 0.999623 - . ID=CGI_10023975; scaffold760 TRF Tandem_Repeat 113110 113918 744 + . . scaffold760 TRF Tandem_Repeat 116647 116698 86 + . . scaffold760 TRF Tandem_Repeat 116647 116704 73 + . . scaffold760 GLEAN promoter 116770 117769 0.706686 + . ID=CGI_10023976; scaffold760 GLEAN mRNA 117770 147032 0.706686 + . ID=CGI_10023976; scaffold760 TRF Tandem_Repeat 120823 120876 108 + . . scaffold760 TRF Tandem_Repeat 125947 126141 138 + . . scaffold760 WUBlastX LINE_CR1 127593 127637 20 + . . scaffold760 WUBlastX LINE_L1-Tx1 127617 128279 67 + . . scaffold760 WUBlastX LINE_L1-Tx1 127785 130661 1616 + . . scaffold760 WUBlastX LINE_L1-Tx1 130657 130962 57 + . . scaffold760 WUBlastX LINE_L1-Tx1 130774 130974 75 + . . scaffold760 WUBlastX LINE_L1-Tx1 130983 131195 21 + . . scaffold760 WUBlastX LINE_L1 131022 131063 22 + . . scaffold760 TRF Tandem_Repeat 138625 139008 529 + . . scaffold760 TRF Tandem_Repeat 151086 151166 55 + . . scaffold760 TRF Tandem_Repeat 151087 151177 65 + . . scaffold760 TRF Tandem_Repeat 151092 151168 52 + . . scaffold760 GLEAN mRNA 153877 173247 0.999029 - . ID=CGI_10023977; scaffold760 TRF Tandem_Repeat 154234 154661 662 + . . scaffold760 TRF Tandem_Repeat 164722 164747 52 + . . scaffold760 GLEAN promoter 173248 174247 0.999029 - . ID=CGI_10023977; scaffold760 GLEAN promoter 175402 176401 0.164932 + . ID=CGI_10023978; scaffold760 TRF Tandem_Repeat 176291 176352 79 + . . scaffold760 GLEAN mRNA 176402 186183 0.164932 + . ID=CGI_10023978; scaffold760 WUBlastX DNA_TcMar-Marin 189603 189860 45 + . . scaffold760 TRF Tandem_Repeat 190705 190757 106 + . . scaffold760 TRF Tandem_Repeat 195551 195615 130 + . . scaffold760 TRF Tandem_Repeat 195886 195918 52 + . . scaffold760 TRF Tandem_Repeat 196587 196729 261 + . . scaffold760 TRF Tandem_Repeat 203972 204113 221 + . . scaffold760 GLEAN mRNA 216798 220216 0.448598 - . ID=CGI_10023979; scaffold760 GLEAN promoter 220217 221216 0.448598 - . ID=CGI_10023979; scaffold760 TRF Tandem_Repeat 221352 221379 56 + . . scaffold760 TRF Tandem_Repeat 237157 237434 412 + . . scaffold760 TRF Tandem_Repeat 239137 239170 50 + . . scaffold760 GLEAN mRNA 252384 266225 0.999676 - . ID=CGI_10023980; scaffold760 TRF Tandem_Repeat 256175 257070 911 + . . scaffold760 TRF Tandem_Repeat 257815 258339 953 + . . scaffold760 TRF Tandem_Repeat 260024 260243 115 + . . scaffold760 TRF Tandem_Repeat 260172 260258 81 + . . scaffold760 GLEAN promoter 266226 267225 0.999676 - . ID=CGI_10023980; scaffold760 GLEAN promoter 267721 268720 0.980373 + . ID=CGI_10023981; scaffold760 GLEAN mRNA 268721 274999 0.980373 + . ID=CGI_10023981; scaffold760 TRF Tandem_Repeat 270388 270522 252 + . . scaffold760 TRF Tandem_Repeat 274029 274080 104 + . . scaffold760 TRF Tandem_Repeat 278035 278108 50 + . . scaffold760 TRF Tandem_Repeat 279339 279403 50 + . . scaffold760 GLEAN mRNA 289849 291702 0.59015 - . ID=CGI_10023982; scaffold760 GLEAN promoter 291703 292702 0.59015 - . ID=CGI_10023982; scaffold760 TRF Tandem_Repeat 295104 295146 70 + . . scaffold760 TRF Tandem_Repeat 295105 295154 57 + . . scaffold760 GLEAN promoter 297503 298502 0.507041 + . ID=CGI_10023983; scaffold760 GLEAN mRNA 298503 341442 0.507041 + . ID=CGI_10023983; scaffold760 TRF Tandem_Repeat 303341 303712 674 + . . scaffold760 TRF Tandem_Repeat 309567 309594 56 + . . scaffold760 TRF Tandem_Repeat 324973 325003 62 + . . scaffold760 TRF Tandem_Repeat 326133 326209 154 + . . scaffold760 TRF Tandem_Repeat 326237 326261 50 + . . scaffold760 TRF Tandem_Repeat 342057 343111 1221 + . . scaffold760 TRF Tandem_Repeat 342057 343125 1321 + . . scaffold760 TRF Tandem_Repeat 342058 343125 1201 + . . scaffold760 TRF Tandem_Repeat 342058 343111 1247 + . . scaffold760 GLEAN mRNA 349081 354421 0.997989 - . ID=CGI_10023984; scaffold760 GLEAN promoter 354422 355421 0.997989 - . ID=CGI_10023984; scaffold760 GLEAN mRNA 354628 374212 0.951039 - . ID=CGI_10023985; scaffold760 GLEAN promoter 374213 375212 0.951039 - . ID=CGI_10023985; scaffold760 GLEAN promoter 375926 376925 0.889859 + . ID=CGI_10023986; scaffold760 GLEAN mRNA 376926 380104 0.889859 + . ID=CGI_10023986; scaffold760 TRF Tandem_Repeat 382830 383661 1457 + . . scaffold760 GLEAN mRNA 385984 400412 0.968491 - . ID=CGI_10023987; scaffold760 TRF Tandem_Repeat 390159 390205 94 + . . scaffold760 TRF Tandem_Repeat 396080 396143 128 + . . scaffold760 GLEAN promoter 400413 401412 0.968491 - . ID=CGI_10023987; scaffold760 TRF Tandem_Repeat 403795 403840 74 + . . scaffold760 GLEAN promoter 404783 405782 0.593157 + . ID=CGI_10023988; scaffold760 GLEAN mRNA 405783 424633 0.593157 + . ID=CGI_10023988; scaffold760 TRF Tandem_Repeat 416402 416615 374 + . . scaffold760 TRF Tandem_Repeat 424860 424907 78 + . . scaffold760 TRF Tandem_Repeat 435413 435456 79 + . . scaffold760 TRF Tandem_Repeat 438626 438706 162 + . . scaffold760 TRF Tandem_Repeat 442235 442775 1055 + . . scaffold760 GLEAN promoter 447254 448253 0.618186 + . ID=CGI_10023989; scaffold760 GLEAN mRNA 448254 448472 0.618186 + . ID=CGI_10023989; scaffold760 GLEAN promoter 460626 461625 0.999999 + . ID=CGI_10023990; scaffold760 GLEAN mRNA 461626 483995 0.999999 + . ID=CGI_10023990; scaffold760 TRF Tandem_Repeat 466020 466067 60 + . . scaffold760 TRF Tandem_Repeat 476412 476482 142 + . . scaffold760 TRF Tandem_Repeat 480525 480738 135 + . . scaffold760 TRF Tandem_Repeat 480580 480813 255 + . . scaffold760 TRF Tandem_Repeat 481026 481085 113 + . . scaffold760 TRF Tandem_Repeat 485079 485136 73 + . . scaffold760 TRF Tandem_Repeat 485085 485136 86 + . . scaffold760 TRF Tandem_Repeat 486356 487611 1675 + . . scaffold760 TRF Tandem_Repeat 493256 493299 88 + . . scaffold760 TRF Tandem_Repeat 493560 494777 1763 + . . scaffold760 TRF Tandem_Repeat 497507 497566 120 + . . scaffold760 TRF Tandem_Repeat 498872 498901 60 + . . scaffold760 TRF Tandem_Repeat 499893 499938 74 + . . scaffold760 TRF Tandem_Repeat 505757 506044 393 + . . scaffold760 GLEAN promoter 523044 524043 1 + . ID=CGI_10023991; scaffold760 GLEAN mRNA 524044 529138 1 + . ID=CGI_10023991; scaffold760 TRF Tandem_Repeat 528658 528754 185 + . . scaffold760 WUBlastX DNA_Sola 530173 530778 104 + . . scaffold760 WUBlastX LINE_RTE-X 533477 534232 201 + . . scaffold760 TRF Tandem_Repeat 534261 534320 57 + . . scaffold760 GLEAN mRNA 540692 546352 0.81116 - . ID=CGI_10023992; scaffold760 GLEAN promoter 546353 547352 0.81116 - . ID=CGI_10023992; scaffold760 GLEAN promoter 548389 549388 0.602875 + . ID=CGI_10023993; scaffold760 GLEAN mRNA 549389 554184 0.602875 + . ID=CGI_10023993; scaffold760 TRF Tandem_Repeat 549503 549547 90 + . . scaffold760 GLEAN mRNA 553056 559447 0.999997 - . ID=CGI_10023994; scaffold760 GLEAN promoter 553913 554912 1 + . ID=CGI_10023995; scaffold760 TRF Tandem_Repeat 553940 553976 74 + . . scaffold760 GLEAN mRNA 554913 556717 1 + . ID=CGI_10023995; scaffold760 TRF Tandem_Repeat 556400 556507 162 + . . scaffold760 GLEAN promoter 559448 560447 0.999997 - . ID=CGI_10023994; scaffold760 TRF Tandem_Repeat 568258 568552 252 + . . scaffold760 TRF Tandem_Repeat 568258 568552 279 + . . scaffold760 TRF Tandem_Repeat 573844 573884 82 + . . scaffold760 GLEAN promoter 579646 580645 0.999984 + . ID=CGI_10023996; scaffold760 GLEAN mRNA 580646 584206 0.999984 + . ID=CGI_10023996; scaffold760 GLEAN promoter 587259 588258 0.733483 + . ID=CGI_10023997; scaffold760 GLEAN promoter 588189 589188 0.770917 + . ID=CGI_10023998; scaffold760 GLEAN mRNA 588259 588480 0.733483 + . ID=CGI_10023997; scaffold760 GLEAN mRNA 589189 597623 0.770917 + . ID=CGI_10023998; scaffold760 TRF Tandem_Repeat 590891 591547 141 + . . scaffold760 TRF Tandem_Repeat 590997 591500 600 + . . scaffold760 TRF Tandem_Repeat 591314 591547 220 + . . scaffold760 TRF Tandem_Repeat 595377 595457 155 + . . scaffold760 TRF Tandem_Repeat 595699 595739 73 + . . scaffold760 TRF Tandem_Repeat 599091 599161 135 + . . scaffold760 TRF Tandem_Repeat 599823 599872 82 + . . scaffold760 TRF Tandem_Repeat 607022 607066 90 + . . scaffold760 TRF Tandem_Repeat 608835 608892 109 + . . scaffold760 TRF Tandem_Repeat 609917 609977 122 + . . scaffold760 TRF Tandem_Repeat 612653 612708 112 + . . scaffold760 TRF Tandem_Repeat 613186 613220 52 + . . scaffold760 TRF Tandem_Repeat 613403 614411 1430 + . . scaffold760 TRF Tandem_Repeat 615483 615523 82 + . . scaffold760 TRF Tandem_Repeat 620183 620262 137 + . . scaffold760 TRF Tandem_Repeat 624429 624457 51 + . . scaffold760 TRF Tandem_Repeat 626333 626400 136 + . . scaffold760 GLEAN promoter 628848 629847 0.691323 + . ID=CGI_10023999; scaffold760 GLEAN mRNA 629848 631696 0.691323 + . ID=CGI_10023999; scaffold760 TRF Tandem_Repeat 635918 635994 154 + . . scaffold760 TRF Tandem_Repeat 640754 640962 166 + . . scaffold760 TRF Tandem_Repeat 640761 640945 250 + . . scaffold760 TRF Tandem_Repeat 641303 641566 154 + . . scaffold760 TRF Tandem_Repeat 641426 641571 96 + . . scaffold760 GLEAN promoter 646848 647847 0.998149 + . ID=CGI_10024000; scaffold760 GLEAN mRNA 647848 669341 0.998149 + . ID=CGI_10024000; scaffold760 TRF Tandem_Repeat 650567 650612 92 + . . scaffold760 TRF Tandem_Repeat 654411 654459 98 + . . scaffold760 TRF Tandem_Repeat 661294 661318 50 + . . scaffold760 GLEAN mRNA 672564 675967 0.380305 - . ID=CGI_10024001; scaffold760 TRF Tandem_Repeat 675456 675642 203 + . . scaffold760 GLEAN promoter 675968 676967 0.380305 - . ID=CGI_10024001; scaffold760 GLEAN promoter 679162 680161 0.472443 + . ID=CGI_10024002; scaffold760 GLEAN mRNA 680162 686364 0.472443 + . ID=CGI_10024002; scaffold760 TRF Tandem_Repeat 690259 690318 120 + . . scaffold760 GLEAN mRNA 691028 691339 1 - . ID=CGI_10024003; scaffold760 GLEAN promoter 691340 692339 1 - . ID=CGI_10024003; scaffold760 GLEAN mRNA 691743 723056 0.452832 - . ID=CGI_10024004; scaffold760 TRF Tandem_Repeat 692574 692715 241 + . . scaffold760 TRF Tandem_Repeat 694379 694421 86 + . . scaffold760 TRF Tandem_Repeat 698867 698997 199 + . . scaffold760 TRF Tandem_Repeat 701788 701820 66 + . . scaffold760 TRF Tandem_Repeat 703520 703553 68 + . . scaffold760 TRF Tandem_Repeat 706042 706097 112 + . . scaffold760 TRF Tandem_Repeat 708877 710096 1803 + . . scaffold760 TRF Tandem_Repeat 719884 719951 127 + . . scaffold760 GLEAN promoter 723057 724056 0.452832 - . ID=CGI_10024004; scaffold760 GLEAN mRNA 725286 725474 0.999367 - . ID=CGI_10024005; scaffold760 GLEAN promoter 725475 726474 0.999367 - . ID=CGI_10024005; scaffold760 GLEAN promoter 726382 727381 0.200868 + . ID=CGI_10024006; scaffold760 TRF Tandem_Repeat 726395 726448 108 + . . scaffold760 GLEAN mRNA 727382 735741 0.200868 + . ID=CGI_10024006; scaffold760 TRF Tandem_Repeat 729195 729242 96 + . . scaffold760 TRF Tandem_Repeat 740636 740858 254 + . . scaffold760 TRF Tandem_Repeat 743235 743299 103 + . . scaffold760 GLEAN promoter 745232 746231 0.999965 + . ID=CGI_10024007; scaffold760 GLEAN mRNA 746232 747535 0.999965 + . ID=CGI_10024007; scaffold760 TRF Tandem_Repeat 747782 747811 60 + . . scaffold760 TRF Tandem_Repeat 750596 750665 106 + . . scaffold760 GLEAN promoter 752344 753343 0.738426 + . ID=CGI_10024008; scaffold760 GLEAN mRNA 753344 754912 0.738426 + . ID=CGI_10024008; scaffold760 TRF Tandem_Repeat 753779 754693 1662 + . . scaffold760 GLEAN promoter 759724 760723 0.814068 + . ID=CGI_10024009; scaffold760 GLEAN mRNA 760724 763746 0.814068 + . ID=CGI_10024009; scaffold760 TRF Tandem_Repeat 762494 763530 1462 + . . scaffold760 TRF Tandem_Repeat 766776 766811 54 + . . scaffold760 GLEAN mRNA 769034 781440 0.699516 - . ID=CGI_10024010; scaffold760 TRF Tandem_Repeat 772879 772905 54 + . . scaffold760 TRF Tandem_Repeat 773216 773551 460 + . . scaffold760 WUBlastX LTR_Pao 777204 777527 26 - . . scaffold760 GLEAN promoter 781441 782440 0.699516 - . ID=CGI_10024010; scaffold760 GLEAN promoter 782714 783713 0.996195 + . ID=CGI_10024011; scaffold760 GLEAN mRNA 783714 783896 0.996195 + . ID=CGI_10024011; scaffold760 GLEAN promoter 790400 791399 0.985265 + . ID=CGI_10024012; scaffold760 WUBlastX DNA_hAT 790746 791363 132 + . . scaffold760 GLEAN mRNA 791400 798427 0.985265 + . ID=CGI_10024012; scaffold760 TRF Tandem_Repeat 794070 794116 58 + . . scaffold760 WUBlastX DNA_hAT 794793 795287 48 + . . scaffold760 GLEAN mRNA 798582 806606 0.999169 - . ID=CGI_10024013; scaffold760 WUBlastX LTR_Gypsy-Cigr 799116 799787 261 - . . scaffold760 WUBlastX LTR_Gypsy-Cigr 799272 799781 353 - . . scaffold760 WUBlastX LTR_Gypsy 800252 800416 58 - . . scaffold760 WUBlastX LTR_Gypsy 800291 800710 61 - . . scaffold760 WUBlastX LTR_Gypsy 800303 800416 74 - . . scaffold760 WUBlastX LTR_Gypsy 800321 800650 68 - . . scaffold760 WUBlastX LTR_Gypsy 801348 801743 93 - . . scaffold760 WUBlastX LTR_Gypsy 801393 801725 95 - . . scaffold760 WUBlastX LTR_Gypsy 801426 801824 37 - . . scaffold760 GLEAN promoter 806607 807606 0.999169 - . ID=CGI_10024013; scaffold760 GLEAN mRNA 807782 807961 1 - . ID=CGI_10024014; scaffold760 GLEAN promoter 807962 808961 1 - . ID=CGI_10024014; scaffold760 GLEAN promoter 808231 809230 0.557561 + . ID=CGI_10024015; scaffold760 GLEAN mRNA 809231 810996 0.557561 + . ID=CGI_10024015; scaffold760 GLEAN promoter 810669 811668 0.54434 + . ID=CGI_10024016; scaffold760 GLEAN mRNA 811669 818661 0.54434 + . ID=CGI_10024016; scaffold760 WUBlastX DNA_hAT 812593 813084 80 + . . scaffold760 GLEAN mRNA 818070 819005 0.999991 - . ID=CGI_10024017; scaffold760 GLEAN promoter 819006 820005 0.999991 - . ID=CGI_10024017; scaffold760 GLEAN mRNA 824188 831569 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 826489 826615 106 + . . scaffold760 TRF Tandem_Repeat 826490 826723 282 + . . scaffold760 TRF Tandem_Repeat 826501 826641 153 + . . scaffold760 TRF Tandem_Repeat 826537 826683 92 + . . scaffold760 TRF Tandem_Repeat 827499 827529 62 + . . scaffold760 TRF Tandem_Repeat 829338 829380 86 + . . scaffold760 TRF Tandem_Repeat 830072 830119 96 + . . scaffold760 GLEAN promoter 831570 832569 0.999624 - . ID=CGI_10024018; scaffold760 TRF Tandem_Repeat 864576 864628 97 + . . scaffold760 TRF Tandem_Repeat 865762 865802 82 + . . scaffold760 GLEAN promoter 868090 869089 0.544755 + . ID=CGI_10024019; scaffold760 GLEAN mRNA 869090 882371 0.544755 + . ID=CGI_10024019; scaffold760 WUBlastX DNA_Harbinger 872316 872456 40 + . . scaffold760 TRF Tandem_Repeat 873079 873294 405 + . . scaffold760 GLEAN mRNA 873547 887424 1 - . ID=CGI_10024020; scaffold760 TRF Tandem_Repeat 885042 885097 112 + . . scaffold760 GLEAN promoter 887425 888424 1 - . ID=CGI_10024020; scaffold760 GLEAN promoter 890165 891164 0.999904 + . ID=CGI_10024021; scaffold760 GLEAN mRNA 891165 896176 0.999904 + . ID=CGI_10024021; scaffold760 TRF Tandem_Repeat 896188 896559 233 + . . scaffold763 WUBlastX DNA_hAT-Tip100 3 80 29 - . . scaffold763 WUBlastX DNA_hAT-Tip100 85 147 32 - . . scaffold764 TRF Tandem_Repeat 10117 10150 50 + . . scaffold764 GLEAN promoter 11592 12591 1 + . ID=CGI_10001621; scaffold764 GLEAN mRNA 12592 14256 1 + . ID=CGI_10001621; scaffold764 WUBlastX LINE_RTE-X 20735 20944 41 + . . scaffold764 WUBlastX LINE_RTE-X 20735 21004 32 + . . scaffold764 WUBlastX LINE_CR1-L2 21996 22457 93 - . . scaffold764 WUBlastX LINE_L2 21996 22331 105 - . . scaffold764 GLEAN mRNA 23588 27279 0.702385 - . ID=CGI_10001622; scaffold764 TRF Tandem_Repeat 24152 24203 65 + . . scaffold764 TRF Tandem_Repeat 24696 24807 224 + . . scaffold764 GLEAN promoter 27280 28035 0.702385 - . ID=CGI_10001622; scaffold765 GLEAN promoter 1431 2430 0.99935 + . ID=CGI_10012455; scaffold765 GLEAN mRNA 2431 19048 0.99935 + . ID=CGI_10012455; scaffold765 GLEAN promoter 20223 21222 0.999999 + . ID=CGI_10012456; scaffold765 GLEAN mRNA 21223 23991 0.999999 + . ID=CGI_10012456; scaffold765 GLEAN promoter 30236 31235 0.394356 + . ID=CGI_10012457; scaffold765 GLEAN mRNA 31236 46420 0.394356 + . ID=CGI_10012457; scaffold765 GLEAN promoter 46359 47358 0.999676 + . ID=CGI_10012458; scaffold765 GLEAN mRNA 47359 68335 0.999676 + . ID=CGI_10012458; scaffold765 GLEAN promoter 94742 95741 0.791417 + . ID=CGI_10012459; scaffold765 GLEAN mRNA 95742 102015 0.791417 + . ID=CGI_10012459; scaffold765 GLEAN promoter 114223 115222 0.999372 + . ID=CGI_10012460; scaffold765 GLEAN promoter 114668 115667 0.343174 + . ID=CGI_10012461; scaffold765 GLEAN mRNA 115223 115480 0.999372 + . ID=CGI_10012460; scaffold765 GLEAN mRNA 115668 131150 0.343174 + . ID=CGI_10012461; scaffold765 GLEAN promoter 130350 131349 0.340718 + . ID=CGI_10012462; scaffold765 GLEAN mRNA 131350 141280 0.340718 + . ID=CGI_10012462; scaffold765 GLEAN mRNA 140927 141979 0.99822 - . ID=CGI_10012463; scaffold765 GLEAN promoter 141980 142979 0.99822 - . ID=CGI_10012463; scaffold765 GLEAN promoter 147704 148703 1 + . ID=CGI_10012464; scaffold765 GLEAN mRNA 148704 150688 1 + . ID=CGI_10012464; scaffold765 GLEAN promoter 153943 154942 1 + . ID=CGI_10012465; scaffold765 GLEAN mRNA 154943 158584 1 + . ID=CGI_10012465; scaffold765 GLEAN mRNA 160594 171431 0.999051 - . ID=CGI_10012466; scaffold765 GLEAN promoter 171432 172431 0.999051 - . ID=CGI_10012466; scaffold765 GLEAN mRNA 171567 176836 1 - . ID=CGI_10012467; scaffold765 GLEAN promoter 176837 177836 1 - . ID=CGI_10012467; scaffold765 GLEAN promoter 177080 178079 0.614396 + . ID=CGI_10012468; scaffold765 GLEAN mRNA 178080 184004 0.614396 + . ID=CGI_10012468; scaffold765 GLEAN mRNA 185629 187476 1 - . ID=CGI_10012469; scaffold765 GLEAN promoter 187477 188476 1 - . ID=CGI_10012469; scaffold765 GLEAN promoter 187541 188540 1 + . ID=CGI_10012470; scaffold765 GLEAN mRNA 188541 189941 1 + . ID=CGI_10012470; scaffold765 GLEAN promoter 189027 190026 1 + . ID=CGI_10012471; scaffold765 GLEAN mRNA 190027 192441 1 + . ID=CGI_10012471; scaffold765 GLEAN mRNA 194871 204676 1 - . ID=CGI_10012472; scaffold765 GLEAN promoter 204677 205676 1 - . ID=CGI_10012472; scaffold765 GLEAN mRNA 207882 228566 0.939954 - . ID=CGI_10012473; scaffold765 GLEAN promoter 228567 229566 0.939954 - . ID=CGI_10012473; scaffold765 GLEAN mRNA 228868 230834 0.999992 - . ID=CGI_10012474; scaffold765 GLEAN promoter 230835 231834 0.999992 - . ID=CGI_10012474; scaffold765 GLEAN promoter 234617 235616 0.889922 + . ID=CGI_10012475; scaffold765 GLEAN mRNA 235617 239583 0.889922 + . ID=CGI_10012475; scaffold765 GLEAN mRNA 243118 262667 0.937542 - . ID=CGI_10012476; scaffold765 GLEAN promoter 248078 249077 0.999999 + . ID=CGI_10012477; scaffold765 GLEAN mRNA 249078 264073 0.999999 + . ID=CGI_10012477; scaffold765 GLEAN promoter 262668 263667 0.937542 - . ID=CGI_10012476; scaffold765 GLEAN mRNA 297945 311155 0.499964 - . ID=CGI_10012478; scaffold765 GLEAN promoter 311156 312155 0.499964 - . ID=CGI_10012478; scaffold765 GLEAN mRNA 317369 326613 0.999783 - . ID=CGI_10012479; scaffold765 GLEAN promoter 326614 326698 0.999783 - . ID=CGI_10012479; scaffold766 GLEAN promoter 1058 2057 0.965005 + . ID=CGI_10003454; scaffold766 GLEAN mRNA 2058 12617 0.965005 + . ID=CGI_10003454; scaffold766 TRF Tandem_Repeat 2219 2339 138 + . . scaffold766 TRF Tandem_Repeat 3609 4145 194 + . . scaffold766 TRF Tandem_Repeat 10404 10464 108 + . . scaffold766 TRF Tandem_Repeat 17378 17428 66 + . . scaffold766 GLEAN promoter 19241 20240 0.789183 + . ID=CGI_10003455; scaffold766 GLEAN mRNA 20241 34581 0.789183 + . ID=CGI_10003455; scaffold766 TRF Tandem_Repeat 30383 30414 64 + . . scaffold766 TRF Tandem_Repeat 30803 30957 122 + . . scaffold766 TRF Tandem_Repeat 30830 30944 106 + . . scaffold766 TRF Tandem_Repeat 30833 30915 76 + . . scaffold766 TRF Tandem_Repeat 32379 32485 115 + . . scaffold766 GLEAN promoter 33909 34908 1 + . ID=CGI_10003456; scaffold766 GLEAN mRNA 34909 39578 1 + . ID=CGI_10003456; scaffold766 WUBlastX LINE_I-Nimb 38031 38474 46 + . . scaffold766 TRF Tandem_Repeat 40536 40582 76 + . . scaffold766 TRF Tandem_Repeat 49428 50249 983 + . . scaffold766 WUBlastX LINE_L1-Tx1 63095 63571 54 - . . scaffold766 WUBlastX LINE_L1-Tx1 63110 63505 89 - . . scaffold766 WUBlastX LINE_L1 64203 64355 58 - . . scaffold766 WUBlastX LINE_L1-Tx1 64331 64609 115 - . . scaffold766 WUBlastX LINE_L1 64394 64648 42 - . . scaffold767 WUBlastX LINE_RTE-BovB 12077 13156 369 - . . scaffold767 WUBlastX LINE_RTE-BovB 13146 14063 156 - . . scaffold767 WUBlastX LINE_RTE-BovB 14101 14442 118 - . . scaffold767 WUBlastX LINE_RTE-BovB 14172 14915 41 - . . scaffold767 WUBlastX LINE_RTE-BovB 14529 14864 113 - . . scaffold767 GLEAN mRNA 17263 21621 1 - . ID=CGI_10014835; scaffold767 GLEAN promoter 20720 21719 0.997518 + . ID=CGI_10014836; scaffold767 GLEAN promoter 21622 22621 1 - . ID=CGI_10014835; scaffold767 GLEAN mRNA 21720 27179 0.997518 + . ID=CGI_10014836; scaffold767 GLEAN mRNA 29700 42374 0.999674 - . ID=CGI_10014837; scaffold767 TRF Tandem_Repeat 34056 34118 126 + . . scaffold767 TRF Tandem_Repeat 41492 41516 50 + . . scaffold767 GLEAN promoter 42375 43374 0.999674 - . ID=CGI_10014837; scaffold767 GLEAN promoter 42650 43649 0.678522 + . ID=CGI_10014838; scaffold767 GLEAN mRNA 43650 57590 0.678522 + . ID=CGI_10014838; scaffold767 TRF Tandem_Repeat 53365 53396 64 + . . scaffold767 TRF Tandem_Repeat 53396 53437 84 + . . scaffold767 GLEAN mRNA 60149 69184 1 - . ID=CGI_10014839; scaffold767 TRF Tandem_Repeat 65632 66483 903 + . . scaffold767 TRF Tandem_Repeat 66658 66710 61 + . . scaffold767 TRF Tandem_Repeat 66661 66718 89 + . . scaffold767 GLEAN promoter 69185 70184 1 - . ID=CGI_10014839; scaffold767 GLEAN mRNA 69762 71046 1 - . ID=CGI_10014840; scaffold767 GLEAN promoter 71047 72046 1 - . ID=CGI_10014840; scaffold767 GLEAN mRNA 72564 72992 0.999993 - . ID=CGI_10014841; scaffold767 GLEAN promoter 72993 73992 0.999993 - . ID=CGI_10014841; scaffold767 WUBlastX DNA_Crypton 75427 75666 93 - . . scaffold767 WUBlastX DNA_Crypton 75887 76057 56 - . . scaffold767 WUBlastX DNA_Crypton 76418 76729 79 - . . scaffold767 WUBlastX DNA_TcMar-Tc1 77299 78000 327 - . . scaffold767 TRF Tandem_Repeat 78471 78532 124 + . . scaffold767 WUBlastX LINE_DRE 79693 80367 76 + . . scaffold767 WUBlastX LINE_L1-Tx1 79801 80619 372 + . . scaffold767 TRF Tandem_Repeat 88200 88249 100 + . . scaffold767 WUBlastX LTR_Gypsy 90601 90831 169 - . . scaffold767 WUBlastX LTR_Gypsy 90854 91561 321 - . . scaffold767 WUBlastX LTR_Gypsy 90989 92110 379 - . . scaffold767 WUBlastX LTR_Gypsy 91571 92494 400 - . . scaffold767 WUBlastX LTR_Gypsy 91583 92836 255 - . . scaffold767 WUBlastX LTR_Gypsy 91583 92296 434 - . . scaffold767 WUBlastX LTR_Gypsy 92330 92995 83 - . . scaffold767 WUBlastX LTR_Gypsy 93422 93970 72 - . . scaffold767 WUBlastX LTR_Gypsy 93518 93892 92 - . . scaffold767 TRF Tandem_Repeat 96820 96875 75 + . . scaffold767 WUBlastX DNA_IS4EU 100757 101059 55 - . . scaffold767 WUBlastX DNA_IS4EU 100844 101035 56 - . . scaffold767 WUBlastX DNA_Kolobok-IS4 101987 102121 49 - . . scaffold767 WUBlastX DNA_IS4EU 102014 102121 56 - . . scaffold767 WUBlastX DNA_IS4EU 102307 102426 24 + . . scaffold767 WUBlastX DNA_IS4EU 102498 102641 60 + . . scaffold767 TRF Tandem_Repeat 105880 105927 96 + . . scaffold767 TRF Tandem_Repeat 115282 115328 94 + . . scaffold767 TRF Tandem_Repeat 128038 128087 64 + . . scaffold767 TRF Tandem_Repeat 128374 128425 104 + . . scaffold767 TRF Tandem_Repeat 128499 128551 106 + . . scaffold767 TRF Tandem_Repeat 129635 129750 87 + . . scaffold767 TRF Tandem_Repeat 129636 129750 110 + . . scaffold767 WUBlastX DNA_IS4EU 133249 133602 45 + . . scaffold767 TRF Tandem_Repeat 138325 138558 468 + . . scaffold767 TRF Tandem_Repeat 140098 140178 123 + . . scaffold767 WUBlastX LINE_RTE-X 147843 148202 198 + . . scaffold767 WUBlastX LINE_RTE-X 148102 148488 110 + . . scaffold767 TRF Tandem_Repeat 153513 153552 62 + . . scaffold767 GLEAN mRNA 160216 160704 0.999995 - . ID=CGI_10014842; scaffold767 GLEAN promoter 160705 161704 0.999995 - . ID=CGI_10014842; scaffold767 GLEAN mRNA 168239 168454 0.999372 - . ID=CGI_10014843; scaffold767 GLEAN promoter 168455 169454 0.999372 - . ID=CGI_10014843; scaffold767 WUBlastX LTR_Gypsy 171339 172022 50 + . . scaffold767 WUBlastX LTR_Gypsy 171555 172019 268 + . . scaffold767 WUBlastX LTR_Gypsy 171787 172839 400 + . . scaffold767 WUBlastX LTR_Gypsy 171952 172836 633 + . . scaffold767 WUBlastX LTR_Gypsy 172453 172962 164 + . . scaffold767 TRF Tandem_Repeat 181115 181148 68 + . . scaffold767 TRF Tandem_Repeat 182747 182774 56 + . . scaffold767 TRF Tandem_Repeat 187560 187593 68 + . . scaffold767 TRF Tandem_Repeat 193922 193976 110 + . . scaffold767 TRF Tandem_Repeat 195945 195978 68 + . . scaffold767 WUBlastX DNA_TcMar-Marin 215317 215742 71 + . . scaffold767 WUBlastX DNA_TcMar-Marin 215335 216096 34 + . . scaffold767 WUBlastX DNA_TcMar-Marin 215738 215974 50 + . . scaffold767 TRF Tandem_Repeat 220144 220186 52 + . . scaffold767 TRF Tandem_Repeat 220144 220203 59 + . . scaffold767 TRF Tandem_Repeat 220145 220203 57 + . . scaffold767 GLEAN mRNA 231807 231989 0.999372 - . ID=CGI_10014844; scaffold767 GLEAN promoter 231990 232989 0.999372 - . ID=CGI_10014844; scaffold767 TRF Tandem_Repeat 232540 232575 72 + . . scaffold767 TRF Tandem_Repeat 243171 243210 80 + . . scaffold767 TRF Tandem_Repeat 245571 245639 138 + . . scaffold767 TRF Tandem_Repeat 246509 246595 156 + . . scaffold767 TRF Tandem_Repeat 249171 249204 68 + . . scaffold767 GLEAN mRNA 256455 257993 0.593383 - . ID=CGI_10014845; scaffold767 GLEAN promoter 257994 258993 0.593383 - . ID=CGI_10014845; scaffold767 TRF Tandem_Repeat 259875 259914 80 + . . scaffold767 TRF Tandem_Repeat 260955 261013 118 + . . scaffold767 GLEAN promoter 266592 267591 0.433091 + . ID=CGI_10014846; scaffold767 GLEAN mRNA 267592 288448 0.433091 + . ID=CGI_10014846; scaffold767 WUBlastX LINE_L1-Tx1 280140 280430 38 + . . scaffold767 WUBlastX LINE_L1-Tx1 280245 280430 52 + . . scaffold767 WUBlastX LINE_L1-Tx1 280671 280916 85 + . . scaffold767 WUBlastX LINE_L1 280686 281090 67 + . . scaffold767 GLEAN mRNA 286984 312121 0.999995 - . ID=CGI_10014847; scaffold767 GLEAN promoter 301292 302291 0.863372 + . ID=CGI_10014848; scaffold767 GLEAN mRNA 302292 305767 0.863372 + . ID=CGI_10014848; scaffold767 GLEAN promoter 311376 312375 1 + . ID=CGI_10014849; scaffold767 GLEAN promoter 312122 313121 0.999995 - . ID=CGI_10014847; scaffold767 GLEAN mRNA 312376 315210 1 + . ID=CGI_10014849; scaffold767 TRF Tandem_Repeat 313103 313170 82 + . . scaffold767 TRF Tandem_Repeat 313129 313173 54 + . . scaffold767 GLEAN mRNA 315899 380131 0.808127 - . ID=CGI_10014850; scaffold767 WUBlastX LINE_CR1-L2 320503 320532 22 + . . scaffold767 WUBlastX LINE_RTE-X 320688 321728 47 + . . scaffold767 WUBlastX LINE_L2 320883 321731 623 + . . scaffold767 TRF Tandem_Repeat 326906 326973 113 + . . scaffold767 TRF Tandem_Repeat 328327 328475 90 + . . scaffold767 TRF Tandem_Repeat 350619 350706 68 + . . scaffold767 TRF Tandem_Repeat 351694 352437 898 + . . scaffold767 TRF Tandem_Repeat 351694 352520 775 + . . scaffold767 TRF Tandem_Repeat 374897 374934 58 + . . scaffold767 GLEAN promoter 380132 381131 0.808127 - . ID=CGI_10014850; scaffold767 GLEAN promoter 380639 381638 1 + . ID=CGI_10014851; scaffold767 GLEAN mRNA 381639 385620 1 + . ID=CGI_10014851; scaffold767 TRF Tandem_Repeat 382069 382899 428 + . . scaffold767 TRF Tandem_Repeat 382069 382786 731 + . . scaffold767 TRF Tandem_Repeat 382225 382899 529 + . . scaffold767 GLEAN mRNA 388804 406541 1 - . ID=CGI_10014852; scaffold767 TRF Tandem_Repeat 395633 396208 114 + . . scaffold767 TRF Tandem_Repeat 395873 396421 332 + . . scaffold767 TRF Tandem_Repeat 398667 398709 86 + . . scaffold767 GLEAN promoter 406542 407541 1 - . ID=CGI_10014852; scaffold767 TRF Tandem_Repeat 407423 407454 64 + . . scaffold767 TRF Tandem_Repeat 412410 412453 88 + . . scaffold77 GLEAN promoter 818 1817 0.999998 + . ID=CGI_10027963; scaffold77 GLEAN mRNA 1818 6653 0.999998 + . ID=CGI_10027963; scaffold77 TRF Tandem_Repeat 1916 1941 52 + . . scaffold77 TRF Tandem_Repeat 14743 14796 67 + . . scaffold77 TRF Tandem_Repeat 14746 14791 67 + . . scaffold77 TRF Tandem_Repeat 19441 19501 122 + . . scaffold77 TRF Tandem_Repeat 21996 22914 1245 + . . scaffold77 GLEAN promoter 25678 26677 0.544009 + . ID=CGI_10027964; scaffold77 GLEAN mRNA 26678 42813 0.544009 + . ID=CGI_10027964; scaffold77 TRF Tandem_Repeat 30799 30842 72 + . . scaffold77 TRF Tandem_Repeat 32449 32582 72 + . . scaffold77 TRF Tandem_Repeat 32511 32633 79 + . . scaffold77 TRF Tandem_Repeat 44457 44483 54 + . . scaffold77 GLEAN promoter 55264 56263 0.999265 + . ID=CGI_10027965; scaffold77 GLEAN mRNA 56264 88313 0.999265 + . ID=CGI_10027965; scaffold77 TRF Tandem_Repeat 83933 84288 397 + . . scaffold77 TRF Tandem_Repeat 85761 85962 181 + . . scaffold77 TRF Tandem_Repeat 85852 86221 210 + . . scaffold77 TRF Tandem_Repeat 89730 89975 177 + . . scaffold77 GLEAN mRNA 92627 103108 0.416789 - . ID=CGI_10027966; scaffold77 WUBlastX DNA_TcMar-Pogo 95306 96658 741 - . . scaffold77 WUBlastX DNA_TcMar-Tigge 96791 96928 40 - . . scaffold77 GLEAN promoter 102539 103538 0.999676 + . ID=CGI_10027967; scaffold77 GLEAN promoter 103109 104108 0.416789 - . ID=CGI_10027966; scaffold77 GLEAN mRNA 103539 112727 0.999676 + . ID=CGI_10027967; scaffold77 TRF Tandem_Repeat 116078 116130 90 + . . scaffold77 TRF Tandem_Repeat 116748 116797 91 + . . scaffold77 GLEAN mRNA 118823 124260 0.831404 - . ID=CGI_10027968; scaffold77 GLEAN promoter 124261 125260 0.831404 - . ID=CGI_10027968; scaffold77 TRF Tandem_Repeat 142394 142430 74 + . . scaffold77 GLEAN promoter 147866 148865 1 + . ID=CGI_10027969; scaffold77 GLEAN mRNA 148866 159237 1 + . ID=CGI_10027969; scaffold77 TRF Tandem_Repeat 155359 155414 112 + . . scaffold77 TRF Tandem_Repeat 160530 160979 418 + . . scaffold77 TRF Tandem_Repeat 160541 160990 808 + . . scaffold77 TRF Tandem_Repeat 160541 160990 519 + . . scaffold77 TRF Tandem_Repeat 160768 160850 53 + . . scaffold77 TRF Tandem_Repeat 160830 160951 102 + . . scaffold77 GLEAN promoter 165912 166911 0.993583 + . ID=CGI_10027970; scaffold77 GLEAN mRNA 166912 189780 0.993583 + . ID=CGI_10027970; scaffold77 WUBlastX LINE_CR1 168490 168567 28 + . . scaffold77 WUBlastX LINE_L1-Tx1 169180 171771 934 + . . scaffold77 TRF Tandem_Repeat 174894 175007 174 + . . scaffold77 TRF Tandem_Repeat 202892 202957 132 + . . scaffold77 TRF Tandem_Repeat 202957 202984 56 + . . scaffold77 GLEAN promoter 206642 207641 0.999993 + . ID=CGI_10027971; scaffold77 GLEAN mRNA 207642 214507 0.999993 + . ID=CGI_10027971; scaffold77 GLEAN mRNA 214721 218666 0.989551 - . ID=CGI_10027972; scaffold77 GLEAN promoter 218248 219247 0.972932 + . ID=CGI_10027973; scaffold77 GLEAN promoter 218667 219666 0.989551 - . ID=CGI_10027972; scaffold77 GLEAN mRNA 219248 222903 0.972932 + . ID=CGI_10027973; scaffold77 TRF Tandem_Repeat 219809 219885 73 + . . scaffold77 TRF Tandem_Repeat 219809 219885 82 + . . scaffold77 TRF Tandem_Repeat 226699 227834 2058 + . . scaffold77 GLEAN promoter 240730 241729 0.999999 + . ID=CGI_10027974; scaffold77 GLEAN mRNA 241730 244903 0.999999 + . ID=CGI_10027974; scaffold77 GLEAN mRNA 250341 259296 1 - . ID=CGI_10027975; scaffold77 GLEAN promoter 259297 260296 1 - . ID=CGI_10027975; scaffold77 TRF Tandem_Repeat 278330 278368 69 + . . scaffold77 GLEAN mRNA 283512 287244 1 - . ID=CGI_10027976; scaffold77 GLEAN promoter 287245 288244 1 - . ID=CGI_10027976; scaffold77 TRF Tandem_Repeat 300379 300425 94 + . . scaffold77 TRF Tandem_Repeat 314319 314864 729 + . . scaffold77 TRF Tandem_Repeat 314319 315303 1029 + . . scaffold77 TRF Tandem_Repeat 314323 315303 891 + . . scaffold77 TRF Tandem_Repeat 314922 315303 649 + . . scaffold77 GLEAN promoter 318122 319121 0.999376 + . ID=CGI_10027977; scaffold77 GLEAN mRNA 319122 330860 0.999376 + . ID=CGI_10027977; scaffold77 TRF Tandem_Repeat 327320 327351 64 + . . scaffold77 GLEAN promoter 335361 336360 1 + . ID=CGI_10027978; scaffold77 GLEAN mRNA 336361 342343 1 + . ID=CGI_10027978; scaffold77 TRF Tandem_Repeat 344766 344827 58 + . . scaffold77 TRF Tandem_Repeat 345575 345714 68 + . . scaffold77 TRF Tandem_Repeat 345582 345710 99 + . . scaffold77 TRF Tandem_Repeat 351034 351068 61 + . . scaffold77 WUBlastX LTR_Ngaro 356151 356267 48 + . . scaffold77 WUBlastX LTR_Ngaro 356199 356288 36 + . . scaffold77 WUBlastX LTR_Ngaro 356294 356539 63 + . . scaffold77 WUBlastX LTR_Ngaro 356312 356899 23 + . . scaffold77 WUBlastX LTR_Ngaro 357025 357072 29 + . . scaffold77 WUBlastX LTR_Ngaro 358122 358286 46 + . . scaffold77 GLEAN mRNA 362224 378052 0.734077 - . ID=CGI_10027979; scaffold77 GLEAN promoter 378053 379052 0.734077 - . ID=CGI_10027979; scaffold77 WUBlastX DNA_Harbinger 387436 387726 116 + . . scaffold77 TRF Tandem_Repeat 389064 389692 407 + . . scaffold77 TRF Tandem_Repeat 389069 389696 475 + . . scaffold77 WUBlastX LINE_L1 390964 391500 27 - . . scaffold77 WUBlastX LINE_L1 391102 391500 141 - . . scaffold77 WUBlastX LINE_L1-Tx1 399275 400795 87 - . . scaffold77 WUBlastX LINE_L1-Tx1 399674 400804 159 - . . scaffold77 WUBlastX LINE_L1-Tx1 400777 401019 152 - . . scaffold77 WUBlastX LINE_L1 400777 401067 105 - . . scaffold77 WUBlastX LINE_L1 400795 401127 58 - . . scaffold77 WUBlastX LINE_L1-Tx1 401172 401456 26 - . . scaffold77 WUBlastX LINE_L1-Tx1 401256 401624 63 - . . scaffold77 WUBlastX LINE_L1-Tx1 401256 401471 122 - . . scaffold77 WUBlastX LINE_L1-Tx1 401259 401543 110 - . . scaffold77 TRF Tandem_Repeat 406572 407568 1421 + . . scaffold77 WUBlastX LTR_Gypsy 410567 412702 1406 + . . scaffold77 WUBlastX LTR_Gypsy 412669 414450 1291 + . . scaffold77 TRF Tandem_Repeat 415662 416510 609 + . . scaffold77 TRF Tandem_Repeat 417000 417046 85 + . . scaffold77 TRF Tandem_Repeat 418175 418200 52 + . . scaffold77 WUBlastX LINE_L1 419137 419367 45 + . . scaffold77 WUBlastX LINE_L1 419212 419397 29 + . . scaffold77 WUBlastX LINE_L1-Tx1 419212 419355 52 + . . scaffold77 WUBlastX LINE_L1-Tx1 419447 419557 37 + . . scaffold77 WUBlastX LINE_L1 419477 419557 38 + . . scaffold77 WUBlastX LINE_L1-Tx1 419486 419548 50 + . . scaffold77 TRF Tandem_Repeat 422619 422936 289 + . . scaffold77 TRF Tandem_Repeat 422624 422929 233 + . . scaffold77 TRF Tandem_Repeat 422651 422924 242 + . . scaffold77 WUBlastX DNA_Harbinger 424092 424382 127 - . . scaffold77 WUBlastX LINE_RTE-X 425450 425653 56 + . . scaffold77 WUBlastX LINE_RTE-X 425489 425656 72 + . . scaffold77 WUBlastX LINE_RTE-X 425489 425623 75 + . . scaffold77 WUBlastX LINE_RTE-X 426529 426840 65 + . . scaffold77 WUBlastX DNA_Kolobok-IS4 431741 432154 85 - . . scaffold77 WUBlastX DNA_IS4EU 432193 432384 61 - . . scaffold77 WUBlastX DNA_Kolobok-IS4 432289 432423 21 - . . scaffold77 WUBlastX LINE_L1-Tx1 433538 433681 76 + . . scaffold77 TRF Tandem_Repeat 464278 464321 52 + . . scaffold77 TRF Tandem_Repeat 464291 464334 61 + . . scaffold77 TRF Tandem_Repeat 464295 464333 51 + . . scaffold77 WUBlastX LINE_L1 465153 465410 71 + . . scaffold77 WUBlastX LINE_L1-Tx1 465180 465308 79 + . . scaffold77 WUBlastX LINE_L1-Tx1 465328 465492 85 + . . scaffold77 WUBlastX LINE_L1-Tx1 465500 466189 105 + . . scaffold77 WUBlastX LINE_L1-Tx1 465503 466060 119 + . . scaffold77 GLEAN promoter 466143 467142 0.750863 + . ID=CGI_10027981; scaffold77 WUBlastX LINE_L1-Tx1 466182 466466 58 + . . scaffold77 GLEAN mRNA 467143 467893 0.750863 + . ID=CGI_10027981; scaffold77 TRF Tandem_Repeat 470288 470547 238 + . . scaffold77 WUBlastX LINE_RTE-X 471069 471695 33 + . . scaffold77 WUBlastX LINE_RTE-X 471447 471785 23 + . . scaffold77 WUBlastX DNA_P 495956 496123 20 - . . scaffold77 TRF Tandem_Repeat 499928 499960 66 + . . scaffold77 GLEAN promoter 501329 502328 0.907971 + . ID=CGI_10027982; scaffold77 GLEAN mRNA 502329 505275 0.907971 + . ID=CGI_10027982; scaffold77 TRF Tandem_Repeat 527052 527650 997 + . . scaffold77 GLEAN mRNA 532978 543391 0.835922 - . ID=CGI_10027983; scaffold77 GLEAN promoter 543392 544391 0.835922 - . ID=CGI_10027983; scaffold77 GLEAN promoter 549497 550496 1 + . ID=CGI_10027984; scaffold77 GLEAN mRNA 550497 553488 1 + . ID=CGI_10027984; scaffold77 WUBlastX LINE_L1 550680 550967 21 + . . scaffold77 TRF Tandem_Repeat 556798 556844 94 + . . scaffold77 WUBlastX LINE_L1-Tx1 568991 569308 77 + . . scaffold77 TRF Tandem_Repeat 569563 570873 1509 + . . scaffold77 WUBlastX LINE_L1 573594 574286 137 + . . scaffold77 WUBlastX LINE_L1-Tx1 573849 574280 210 + . . scaffold77 WUBlastX LINE_L1 573933 574451 122 + . . scaffold77 WUBlastX LINE_L1-Tx1 573933 574280 216 + . . scaffold77 GLEAN mRNA 575682 576814 0.648545 - . ID=CGI_10027985; scaffold77 GLEAN promoter 576815 577814 0.648545 - . ID=CGI_10027985; scaffold77 WUBlastX LINE_L1 577875 578153 20 - . . scaffold77 WUBlastX LTR_Copia 577923 578264 20 - . . scaffold77 WUBlastX LINE_L1-Tx1 583439 584158 180 + . . scaffold77 WUBlastX LINE_L1-Tx1 584142 584615 91 + . . scaffold77 WUBlastX LINE_L1 602328 602759 53 - . . scaffold77 WUBlastX LINE_L1-Tx1 602732 602881 24 - . . scaffold77 TRF Tandem_Repeat 604300 605112 933 + . . scaffold77 TRF Tandem_Repeat 604300 605098 943 + . . scaffold77 WUBlastX LTR_Gypsy-Cigr 609948 610175 69 - . . scaffold77 WUBlastX LTR_Gypsy-Cigr 610150 612750 1553 - . . scaffold77 WUBlastX LTR_Gypsy 612806 613051 24 - . . scaffold77 WUBlastX LTR_Gypsy 612899 613057 36 - . . scaffold77 WUBlastX LTR_Gypsy 613206 613937 39 - . . scaffold77 WUBlastX LTR_Gypsy-Cigr 613431 613940 114 - . . scaffold77 GLEAN promoter 633413 634412 0.481188 + . ID=CGI_10027986; scaffold77 WUBlastX LTR_Gypsy 634317 634637 40 + . . scaffold77 GLEAN mRNA 634413 634898 0.481188 + . ID=CGI_10027986; scaffold77 WUBlastX DNA_Kolobok 648375 648611 26 + . . scaffold77 WUBlastX DNA_Kolobok 648590 649018 61 + . . scaffold77 TRF Tandem_Repeat 649887 649931 90 + . . scaffold77 TRF Tandem_Repeat 650544 650595 86 + . . scaffold77 TRF Tandem_Repeat 652140 652175 54 + . . scaffold77 GLEAN promoter 653725 654724 0.999581 + . ID=CGI_10027987; scaffold77 GLEAN mRNA 654725 664026 0.999581 + . ID=CGI_10027987; scaffold77 WUBlastX DNA_hAT-hATw 655939 657138 25 + . . scaffold77 WUBlastX DNA_hAT-hATw 656125 657138 78 + . . scaffold77 WUBlastX DNA_hAT-hATw 657104 658756 651 + . . scaffold77 WUBlastX DNA_hAT-hATw 658763 658846 38 + . . scaffold77 GLEAN mRNA 661837 671903 1 - . ID=CGI_10027988; scaffold77 WUBlastX LINE_L1-Tx1 664176 664526 39 + . . scaffold77 WUBlastX LINE_L1-Tx1 665488 665658 73 + . . scaffold77 WUBlastX LINE_L1-Tx1 665636 665965 57 + . . scaffold77 GLEAN promoter 671904 672903 1 - . ID=CGI_10027988; scaffold77 GLEAN promoter 672445 673444 0.990396 + . ID=CGI_10027989; scaffold77 GLEAN mRNA 673445 674558 0.990396 + . ID=CGI_10027989; scaffold77 GLEAN promoter 673763 674762 0.83504 + . ID=CGI_10027990; scaffold77 GLEAN mRNA 674763 677683 0.83504 + . ID=CGI_10027990; scaffold77 GLEAN mRNA 686159 686611 1 - . ID=CGI_10027991; scaffold77 GLEAN promoter 686612 687611 1 - . ID=CGI_10027991; scaffold77 TRF Tandem_Repeat 686868 686913 56 + . . scaffold77 TRF Tandem_Repeat 687885 687938 99 + . . scaffold77 TRF Tandem_Repeat 689393 689459 134 + . . scaffold77 TRF Tandem_Repeat 689829 689879 77 + . . scaffold77 TRF Tandem_Repeat 690668 690767 175 + . . scaffold77 WUBlastX LTR_Ngaro 697239 697673 53 + . . scaffold77 WUBlastX LTR_Ngaro 697343 697585 71 + . . scaffold77 WUBlastX LTR_Ngaro 698066 698194 44 + . . scaffold77 WUBlastX LTR_Ngaro 698206 699072 343 + . . scaffold77 WUBlastX LTR_Ngaro 699164 699553 51 + . . scaffold77 WUBlastX LTR_Ngaro 699230 699658 130 + . . scaffold77 WUBlastX LTR_Ngaro 699681 699842 93 + . . scaffold77 TRF Tandem_Repeat 700039 700105 89 + . . scaffold77 TRF Tandem_Repeat 704793 704819 54 + . . scaffold77 TRF Tandem_Repeat 704817 704852 63 + . . scaffold77 WUBlastX LINE_I 713307 713843 27 + . . scaffold77 WUBlastX LINE_CR1-L2 713394 714248 334 + . . scaffold77 WUBlastX LINE_L2 732140 732421 69 + . . scaffold77 WUBlastX LINE_CR1 732170 732298 75 + . . scaffold77 WUBlastX LINE_L2 732179 732364 73 + . . scaffold77 WUBlastX LINE_CR1 732438 732479 22 + . . scaffold77 WUBlastX DNA_Harbinger 734011 734430 200 - . . scaffold77 WUBlastX DNA_Harbinger 734531 734722 51 - . . scaffold77 WUBlastX LTR_Gypsy 735028 735846 238 - . . scaffold77 TRF Tandem_Repeat 736224 736255 64 + . . scaffold77 GLEAN mRNA 737266 763620 0.929793 - . ID=CGI_10027992; scaffold77 TRF Tandem_Repeat 739089 739208 186 + . . scaffold77 TRF Tandem_Repeat 750352 750407 94 + . . scaffold77 GLEAN promoter 752687 753686 1 + . ID=CGI_10027993; scaffold77 GLEAN mRNA 753687 755464 1 + . ID=CGI_10027993; scaffold77 GLEAN promoter 763621 764620 0.929793 - . ID=CGI_10027992; scaffold77 GLEAN mRNA 764096 764407 0.584976 - . ID=CGI_10027994; scaffold77 GLEAN promoter 764408 765407 0.584976 - . ID=CGI_10027994; scaffold77 GLEAN mRNA 765181 765543 0.999843 - . ID=CGI_10027995; scaffold77 GLEAN promoter 765544 766543 0.999843 - . ID=CGI_10027995; scaffold77 GLEAN mRNA 765929 766912 0.44724 - . ID=CGI_10027996; scaffold77 GLEAN promoter 766913 767912 0.44724 - . ID=CGI_10027996; scaffold77 GLEAN mRNA 769061 778962 0.469575 - . ID=CGI_10027997; scaffold77 GLEAN promoter 778963 779962 0.469575 - . ID=CGI_10027997; scaffold77 GLEAN promoter 785446 786445 0.889555 + . ID=CGI_10027998; scaffold77 TRF Tandem_Repeat 785955 785989 70 + . . scaffold77 GLEAN mRNA 786446 795548 0.889555 + . ID=CGI_10027998; scaffold77 GLEAN promoter 797338 798337 0.451743 + . ID=CGI_10027999; scaffold77 GLEAN mRNA 798338 798580 0.451743 + . ID=CGI_10027999; scaffold77 GLEAN promoter 801240 802239 0.997315 + . ID=CGI_10028000; scaffold77 GLEAN mRNA 802240 802620 0.997315 + . ID=CGI_10028000; scaffold77 GLEAN promoter 802977 803976 1 + . ID=CGI_10028001; scaffold77 GLEAN mRNA 803977 804348 1 + . ID=CGI_10028001; scaffold77 TRF Tandem_Repeat 808322 808374 106 + . . scaffold77 TRF Tandem_Repeat 808567 808613 94 + . . scaffold77 TRF Tandem_Repeat 809295 809354 50 + . . scaffold77 TRF Tandem_Repeat 818474 818515 84 + . . scaffold77 TRF Tandem_Repeat 830797 830822 52 + . . scaffold77 TRF Tandem_Repeat 831185 831238 108 + . . scaffold77 GLEAN mRNA 834569 836822 1 - . ID=CGI_10028002; scaffold77 GLEAN promoter 836823 837822 1 - . ID=CGI_10028002; scaffold77 TRF Tandem_Repeat 837760 837793 59 + . . scaffold77 GLEAN mRNA 838080 841474 0.873083 - . ID=CGI_10028003; scaffold77 GLEAN promoter 841475 842474 0.873083 - . ID=CGI_10028003; scaffold77 TRF Tandem_Repeat 843196 843287 123 + . . scaffold77 TRF Tandem_Repeat 843366 843523 151 + . . scaffold77 TRF Tandem_Repeat 843575 843701 146 + . . scaffold77 TRF Tandem_Repeat 843795 843889 104 + . . scaffold77 GLEAN mRNA 848206 851960 0.999676 - . ID=CGI_10028004; scaffold77 GLEAN promoter 851961 852960 0.999676 - . ID=CGI_10028004; scaffold77 WUBlastX LTR_Ngaro 856015 856155 70 - . . scaffold77 WUBlastX LTR_Ngaro 856766 857128 166 - . . scaffold77 WUBlastX LTR_Ngaro 857172 857492 85 - . . scaffold77 WUBlastX LTR_Ngaro 857512 857718 56 - . . scaffold77 WUBlastX LTR_Ngaro 857718 858125 113 - . . scaffold77 WUBlastX LTR_Ngaro 857907 858266 87 - . . scaffold77 WUBlastX LTR_Ngaro 858652 859254 78 - . . scaffold77 WUBlastX LTR_Ngaro 858673 858978 123 - . . scaffold77 TRF Tandem_Repeat 859417 860482 1601 + . . scaffold77 TRF Tandem_Repeat 862972 862999 56 + . . scaffold77 WUBlastX DNA_NOF 865716 866207 70 + . . scaffold77 WUBlastX DNA_NOF 865863 866219 104 + . . scaffold77 WUBlastX DNA_NOF 866212 866748 142 + . . scaffold77 WUBlastX DNA_NOF 867170 867664 32 + . . scaffold77 WUBlastX DNA_NOF 870479 870733 67 + . . scaffold77 TRF Tandem_Repeat 872634 873500 983 + . . scaffold77 TRF Tandem_Repeat 878019 878053 70 + . . scaffold77 TRF Tandem_Repeat 878113 878141 58 + . . scaffold77 GLEAN promoter 880947 881946 1 + . ID=CGI_10028005; scaffold77 GLEAN mRNA 881947 884481 1 + . ID=CGI_10028005; scaffold77 WUBlastX LTR_DIRS 885222 885554 62 + . . scaffold77 WUBlastX LTR_DIRS 885225 885635 51 + . . scaffold77 WUBlastX LTR_DIRS 886947 887282 130 + . . scaffold77 GLEAN mRNA 889236 889760 1 - . ID=CGI_10028006; scaffold77 GLEAN promoter 889761 890760 1 - . ID=CGI_10028006; scaffold77 GLEAN promoter 914429 915428 0.98826 + . ID=CGI_10028007; scaffold77 GLEAN mRNA 915429 921051 0.98826 + . ID=CGI_10028007; scaffold77 GLEAN promoter 920349 921348 1 + . ID=CGI_10028008; scaffold77 TRF Tandem_Repeat 920718 920765 96 + . . scaffold77 GLEAN mRNA 921349 939074 1 + . ID=CGI_10028008; scaffold77 TRF Tandem_Repeat 923942 923993 95 + . . scaffold77 GLEAN mRNA 926212 938998 0.983193 - . ID=CGI_10028009; scaffold77 TRF Tandem_Repeat 932416 932488 146 + . . scaffold77 TRF Tandem_Repeat 936668 937657 962 + . . scaffold77 TRF Tandem_Repeat 938011 938049 69 + . . scaffold77 GLEAN promoter 938414 939413 0.999675 + . ID=CGI_10028010; scaffold77 GLEAN promoter 938999 939998 0.983193 - . ID=CGI_10028009; scaffold77 GLEAN mRNA 939414 940055 0.999675 + . ID=CGI_10028010; scaffold77 GLEAN mRNA 942716 944837 0.983193 - . ID=CGI_10028011; scaffold77 GLEAN promoter 944838 945837 0.983193 - . ID=CGI_10028011; scaffold77 GLEAN mRNA 945677 960566 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX LINE_RTE-RTE 948472 948555 21 + . . scaffold77 WUBlastX LINE_L1 949301 949780 62 + . . scaffold77 WUBlastX LINE_RTE-BovB 949391 949882 213 + . . scaffold77 WUBlastX LINE_RTE-BovB 949466 949882 367 + . . scaffold77 WUBlastX LINE_RTE-BovB 949885 950397 357 + . . scaffold77 TRF Tandem_Repeat 950452 950529 147 + . . scaffold77 TRF Tandem_Repeat 954622 954700 149 + . . scaffold77 GLEAN promoter 956081 957080 1 + . ID=CGI_10028013; scaffold77 GLEAN mRNA 957081 962570 1 + . ID=CGI_10028013; scaffold77 WUBlastX DNA_Zator 959901 960446 147 - . . scaffold77 GLEAN promoter 960567 961566 0.933688 - . ID=CGI_10028012; scaffold77 WUBlastX DNA_Zator 960576 960713 75 - . . scaffold77 WUBlastX DNA_Zator 960825 961166 20 - . . scaffold77 GLEAN mRNA 966955 973630 1 - . ID=CGI_10028014; scaffold77 GLEAN promoter 973631 974630 1 - . ID=CGI_10028014; scaffold77 WUBlastX LINE_RTE-X 978644 979339 178 + . . scaffold77 TRF Tandem_Repeat 985036 985085 100 + . . scaffold77 GLEAN promoter 994209 995208 0.910146 + . ID=CGI_10028015; scaffold77 GLEAN mRNA 995209 1003555 0.910146 + . ID=CGI_10028015; scaffold77 TRF Tandem_Repeat 999157 999419 400 + . . scaffold77 GLEAN promoter 1009452 1010451 0.901774 + . ID=CGI_10028016; scaffold77 GLEAN mRNA 1010452 1023046 0.901774 + . ID=CGI_10028016; scaffold77 TRF Tandem_Repeat 1014400 1014720 471 + . . scaffold77 TRF Tandem_Repeat 1022334 1022391 116 + . . scaffold77 GLEAN mRNA 1025613 1033746 0.999911 - . ID=CGI_10028017; scaffold77 WUBlastX LINE_RTE-X 1030591 1033860 926 - . . scaffold77 GLEAN promoter 1033747 1034746 0.999911 - . ID=CGI_10028017; scaffold77 WUBlastX LTR_Gypsy 1037420 1037719 77 + . . scaffold77 WUBlastX LTR_Gypsy 1037477 1037839 69 + . . scaffold77 WUBlastX LTR_Gypsy 1037480 1037716 128 + . . scaffold77 TRF Tandem_Repeat 1039265 1039314 82 + . . scaffold77 TRF Tandem_Repeat 1042164 1042204 82 + . . scaffold77 TRF Tandem_Repeat 1042205 1042265 50 + . . scaffold77 GLEAN promoter 1050300 1051299 1 + . ID=CGI_10028018; scaffold77 GLEAN mRNA 1051300 1061553 1 + . ID=CGI_10028018; scaffold77 TRF Tandem_Repeat 1055775 1056540 685 + . . scaffold77 TRF Tandem_Repeat 1055798 1056509 778 + . . scaffold77 TRF Tandem_Repeat 1055822 1056540 640 + . . scaffold77 TRF Tandem_Repeat 1055918 1056526 280 + . . scaffold77 TRF Tandem_Repeat 1060936 1061158 272 + . . scaffold77 GLEAN promoter 1067915 1068914 0.933897 + . ID=CGI_10028019; scaffold77 GLEAN mRNA 1068915 1100683 0.933897 + . ID=CGI_10028019; scaffold77 TRF Tandem_Repeat 1072217 1072262 85 + . . scaffold77 TRF Tandem_Repeat 1075524 1075580 114 + . . scaffold77 TRF Tandem_Repeat 1079997 1080041 90 + . . scaffold77 TRF Tandem_Repeat 1092529 1092581 88 + . . scaffold77 TRF Tandem_Repeat 1092529 1092584 58 + . . scaffold77 TRF Tandem_Repeat 1092535 1092584 73 + . . scaffold77 WUBlastX DNA_Zator 1096521 1096703 52 - . . scaffold77 GLEAN promoter 1102271 1103270 1 + . ID=CGI_10028020; scaffold77 GLEAN mRNA 1103271 1111171 1 + . ID=CGI_10028020; scaffold77 GLEAN promoter 1110468 1111467 0.545449 + . ID=CGI_10028021; scaffold77 GLEAN mRNA 1111468 1123998 0.545449 + . ID=CGI_10028021; scaffold77 TRF Tandem_Repeat 1112196 1112375 238 + . . scaffold77 TRF Tandem_Repeat 1112196 1112484 258 + . . scaffold77 TRF Tandem_Repeat 1112392 1112483 98 + . . scaffold77 WUBlastX LINE_L1-Tx1 1120237 1120551 56 - . . scaffold77 WUBlastX LINE_L1-Tx1 1120297 1120536 57 - . . scaffold77 WUBlastX LINE_L1-Tx1 1120544 1120975 90 - . . scaffold77 TRF Tandem_Repeat 1127214 1127283 70 + . . scaffold77 TRF Tandem_Repeat 1127435 1128301 1242 + . . scaffold77 TRF Tandem_Repeat 1129766 1129794 58 + . . scaffold77 GLEAN mRNA 1130589 1133596 0.999992 - . ID=CGI_10028022; scaffold77 GLEAN promoter 1133597 1134596 0.999992 - . ID=CGI_10028022; scaffold77 GLEAN mRNA 1135446 1139060 1 - . ID=CGI_10028023; scaffold77 GLEAN promoter 1139061 1140060 1 - . ID=CGI_10028023; scaffold77 GLEAN promoter 1142248 1143247 0.593074 + . ID=CGI_10028024; scaffold77 GLEAN mRNA 1143248 1154564 0.593074 + . ID=CGI_10028024; scaffold77 GLEAN promoter 1153783 1154782 0.999949 + . ID=CGI_10028025; scaffold77 GLEAN mRNA 1154783 1172069 0.999949 + . ID=CGI_10028025; scaffold77 GLEAN mRNA 1182597 1192886 0.99924 - . ID=CGI_10028026; scaffold77 TRF Tandem_Repeat 1189326 1190206 1146 + . . scaffold77 GLEAN promoter 1192887 1193886 0.99924 - . ID=CGI_10028026; scaffold77 TRF Tandem_Repeat 1221767 1221988 354 + . . scaffold77 TRF Tandem_Repeat 1222361 1222671 291 + . . scaffold77 TRF Tandem_Repeat 1222411 1222671 335 + . . scaffold77 GLEAN promoter 1223181 1224180 0.999676 + . ID=CGI_10028027; scaffold77 GLEAN mRNA 1224181 1233369 0.999676 + . ID=CGI_10028027; scaffold77 TRF Tandem_Repeat 1227828 1227868 82 + . . scaffold77 TRF Tandem_Repeat 1232244 1232835 659 + . . scaffold77 TRF Tandem_Repeat 1232244 1232837 668 + . . scaffold77 GLEAN mRNA 1235014 1241993 0.550292 - . ID=CGI_10028028; scaffold77 GLEAN promoter 1241994 1242993 0.550292 - . ID=CGI_10028028; scaffold77 GLEAN mRNA 1243139 1244990 0.835749 - . ID=CGI_10028029; scaffold77 GLEAN promoter 1244991 1245990 0.835749 - . ID=CGI_10028029; scaffold77 TRF Tandem_Repeat 1247962 1248006 90 + . . scaffold77 WUBlastX LINE_RTE-X 1249170 1249331 32 + . . scaffold77 WUBlastX LINE_RTE-X 1249358 1249573 29 + . . scaffold77 TRF Tandem_Repeat 1249622 1249771 113 + . . scaffold77 TRF Tandem_Repeat 1251430 1251473 88 + . . scaffold77 TRF Tandem_Repeat 1259515 1259748 441 + . . scaffold77 TRF Tandem_Repeat 1261829 1262391 799 + . . scaffold77 GLEAN promoter 1264470 1265469 0.443464 + . ID=CGI_10028030; scaffold77 GLEAN mRNA 1265470 1292938 0.443464 + . ID=CGI_10028030; scaffold77 TRF Tandem_Repeat 1277799 1277939 239 + . . scaffold77 TRF Tandem_Repeat 1283374 1283986 838 + . . scaffold77 GLEAN mRNA 1293095 1309496 0.999074 - . ID=CGI_10028031; scaffold77 TRF Tandem_Repeat 1299284 1299387 84 + . . scaffold77 WUBlastX LINE_CR1 1300328 1300849 34 + . . scaffold77 GLEAN promoter 1309497 1310496 0.999074 - . ID=CGI_10028031; scaffold77 GLEAN promoter 1312082 1313081 0.991246 + . ID=CGI_10028032; scaffold77 GLEAN mRNA 1313082 1315379 0.991246 + . ID=CGI_10028032; scaffold77 GLEAN mRNA 1316772 1321110 0.999824 - . ID=CGI_10028033; scaffold77 GLEAN promoter 1320385 1321384 0.983733 + . ID=CGI_10028034; scaffold77 GLEAN promoter 1321111 1322110 0.999824 - . ID=CGI_10028033; scaffold77 GLEAN mRNA 1321385 1345544 0.983733 + . ID=CGI_10028034; scaffold77 GLEAN mRNA 1331073 1335452 0.516784 - . ID=CGI_10028035; scaffold77 TRF Tandem_Repeat 1332369 1332408 80 + . . scaffold77 TRF Tandem_Repeat 1334944 1334987 88 + . . scaffold77 GLEAN promoter 1335453 1336452 0.516784 - . ID=CGI_10028035; scaffold77 TRF Tandem_Repeat 1340721 1340748 56 + . . scaffold77 TRF Tandem_Repeat 1343379 1343632 140 + . . scaffold77 TRF Tandem_Repeat 1344043 1345186 1696 + . . scaffold77 GLEAN mRNA 1345962 1346174 0.999743 - . ID=CGI_10028036; scaffold77 GLEAN promoter 1346175 1347174 0.999743 - . ID=CGI_10028036; scaffold77 GLEAN mRNA 1360228 1364734 0.99993 - . ID=CGI_10028037; scaffold77 GLEAN promoter 1364735 1365734 0.99993 - . ID=CGI_10028037; scaffold77 TRF Tandem_Repeat 1370752 1371312 734 + . . scaffold77 GLEAN mRNA 1400829 1404403 0.999605 - . ID=CGI_10028038; scaffold77 GLEAN promoter 1404404 1405403 0.999605 - . ID=CGI_10028038; scaffold77 GLEAN promoter 1413118 1414117 0.69447 + . ID=CGI_10028039; scaffold77 GLEAN mRNA 1414118 1415008 0.69447 + . ID=CGI_10028039; scaffold77 WUBlastX DNA_Harbinger 1426508 1426657 62 + . . scaffold77 WUBlastX DNA_Harbinger 1426654 1426971 151 + . . scaffold77 WUBlastX DNA_Harbinger 1426968 1427483 113 + . . scaffold77 WUBlastX DNA_Harbinger 1426968 1427393 139 + . . scaffold77 GLEAN promoter 1434771 1435770 0.401661 + . ID=CGI_10028040; scaffold77 GLEAN mRNA 1435771 1455368 0.401661 + . ID=CGI_10028040; scaffold77 WUBlastX LTR_Gypsy 1453953 1454636 272 - . . scaffold77 WUBlastX LTR_Gypsy 1453959 1454867 232 - . . scaffold77 WUBlastX LTR_Gypsy 1453962 1455050 164 - . . scaffold77 WUBlastX LTR_Gypsy 1454484 1455152 128 - . . scaffold77 WUBlastX LTR_Gypsy 1455385 1455531 24 - . . scaffold77 WUBlastX LTR_Gypsy 1455451 1455525 25 - . . scaffold77 WUBlastX LTR_Gypsy-Cigr 1455463 1455546 29 - . . scaffold77 WUBlastX LTR_Gypsy-Cigr 1455472 1455531 32 - . . scaffold77 WUBlastX LTR_Gypsy 1455472 1456161 21 - . . scaffold77 WUBlastX LTR_Gypsy 1455733 1456074 52 - . . scaffold77 WUBlastX LTR_Gypsy 1455952 1456152 24 - . . scaffold77 TRF Tandem_Repeat 1456846 1456892 94 + . . scaffold77 TRF Tandem_Repeat 1472371 1472424 108 + . . scaffold77 TRF Tandem_Repeat 1473814 1473844 62 + . . scaffold77 WUBlastX LINE_Penelope 1476212 1476652 30 + . . scaffold77 TRF Tandem_Repeat 1491209 1492370 1821 + . . scaffold77 TRF Tandem_Repeat 1499192 1499232 55 + . . scaffold77 GLEAN mRNA 1509716 1510798 0.69446 - . ID=CGI_10028041; scaffold77 GLEAN promoter 1510799 1511798 0.69446 - . ID=CGI_10028041; scaffold77 TRF Tandem_Repeat 1511630 1511679 100 + . . scaffold77 TRF Tandem_Repeat 1512577 1512614 76 + . . scaffold77 TRF Tandem_Repeat 1514465 1514510 85 + . . scaffold77 WUBlastX LINE_CR1-L2 1515028 1515642 46 + . . scaffold77 WUBlastX LINE_CR1-L2 1515028 1515276 108 + . . scaffold77 WUBlastX LINE_CR1-L2 1515028 1515471 82 + . . scaffold77 GLEAN mRNA 1520073 1521989 0.999342 - . ID=CGI_10028042; scaffold77 GLEAN promoter 1521990 1522989 0.999342 - . ID=CGI_10028042; scaffold77 GLEAN mRNA 1526546 1527550 0.999658 - . ID=CGI_10028043; scaffold77 GLEAN promoter 1527551 1528550 0.999658 - . ID=CGI_10028043; scaffold77 GLEAN promoter 1537744 1538743 0.732776 + . ID=CGI_10028044; scaffold77 GLEAN mRNA 1538744 1548477 0.732776 + . ID=CGI_10028044; scaffold77 GLEAN mRNA 1542885 1543037 0.618186 - . ID=CGI_10028045; scaffold77 GLEAN promoter 1543038 1544037 0.618186 - . ID=CGI_10028045; scaffold77 TRF Tandem_Repeat 1545668 1546586 557 + . . scaffold77 TRF Tandem_Repeat 1545675 1546586 845 + . . scaffold77 TRF Tandem_Repeat 1550290 1550360 117 + . . scaffold77 GLEAN mRNA 1551701 1563941 0.999999 - . ID=CGI_10028046; scaffold77 TRF Tandem_Repeat 1552582 1553537 1415 + . . scaffold77 TRF Tandem_Repeat 1562322 1562792 574 + . . scaffold77 GLEAN promoter 1563942 1564941 0.999999 - . ID=CGI_10028046; scaffold77 GLEAN mRNA 1566662 1568282 1 - . ID=CGI_10028047; scaffold77 GLEAN promoter 1568283 1569282 1 - . ID=CGI_10028047; scaffold77 TRF Tandem_Repeat 1571046 1571092 94 + . . scaffold77 TRF Tandem_Repeat 1575472 1575589 200 + . . scaffold77 TRF Tandem_Repeat 1577895 1578502 614 + . . scaffold77 TRF Tandem_Repeat 1577896 1578502 539 + . . scaffold77 TRF Tandem_Repeat 1579601 1579785 352 + . . scaffold77 GLEAN mRNA 1579803 1600588 1 - . ID=CGI_10028048; scaffold77 TRF Tandem_Repeat 1580111 1580522 545 + . . scaffold77 TRF Tandem_Repeat 1580111 1580522 545 + . . scaffold77 TRF Tandem_Repeat 1580111 1580475 541 + . . scaffold77 TRF Tandem_Repeat 1580143 1580262 66 + . . scaffold77 TRF Tandem_Repeat 1580143 1580218 69 + . . scaffold77 TRF Tandem_Repeat 1582598 1583199 970 + . . scaffold77 TRF Tandem_Repeat 1583405 1583880 781 + . . scaffold77 TRF Tandem_Repeat 1585503 1585545 68 + . . scaffold77 TRF Tandem_Repeat 1585503 1585551 64 + . . scaffold77 WUBlastX LINE_RTE-BovB 1596953 1597213 162 + . . scaffold77 GLEAN promoter 1600589 1601588 1 - . ID=CGI_10028048; scaffold77 WUBlastX LTR_DIRS 1609623 1609901 56 + . . scaffold77 WUBlastX LTR_DIRS 1609731 1609889 57 + . . scaffold77 TRF Tandem_Repeat 1615054 1615097 88 + . . scaffold77 TRF Tandem_Repeat 1615095 1615133 69 + . . scaffold770 GLEAN promoter 1677 2676 0.996819 + . ID=CGI_10006264; scaffold770 GLEAN mRNA 2677 4820 0.996819 + . ID=CGI_10006264; scaffold770 TRF Tandem_Repeat 38997 39035 60 + . . scaffold770 WUBlastX DNA_PiggyBac 46738 46965 66 + . . scaffold770 WUBlastX DNA_PiggyBac 46959 47783 361 + . . scaffold770 WUBlastX DNA_PiggyBac 47791 47871 32 + . . scaffold770 TRF Tandem_Repeat 48326 48471 181 + . . scaffold770 GLEAN mRNA 56737 75604 0.520804 - . ID=CGI_10006265; scaffold770 GLEAN promoter 63007 64006 0.999372 + . ID=CGI_10006266; scaffold770 GLEAN mRNA 64007 64198 0.999372 + . ID=CGI_10006266; scaffold770 WUBlastX DNA_Kolobok 64964 65104 33 + . . scaffold770 WUBlastX DNA_Kolobok 65292 65447 44 + . . scaffold770 WUBlastX DNA_Kolobok 65570 65725 38 + . . scaffold770 GLEAN promoter 75337 76336 0.99999 + . ID=CGI_10006267; scaffold770 GLEAN promoter 75605 76604 0.520804 - . ID=CGI_10006265; scaffold770 GLEAN mRNA 76337 77931 0.99999 + . ID=CGI_10006267; scaffold770 TRF Tandem_Repeat 81660 83301 2012 + . . scaffold770 WUBlastX LINE_RTE-X 89942 90259 75 + . . scaffold770 GLEAN promoter 106438 107437 1 + . ID=CGI_10006268; scaffold770 GLEAN mRNA 107438 107773 1 + . ID=CGI_10006268; scaffold770 WUBlastX RC_Helitron 107986 108051 34 + . . scaffold770 WUBlastX RC_Helitron 108027 108332 69 + . . scaffold770 WUBlastX RC_Helitron 112682 112921 102 + . . scaffold770 WUBlastX RC_Helitron 112682 112975 71 + . . scaffold770 WUBlastX DNA_Helitron 113212 113565 24 + . . scaffold770 TRF Tandem_Repeat 133737 134403 772 + . . scaffold770 TRF Tandem_Repeat 133737 134403 681 + . . scaffold770 GLEAN promoter 136895 137894 0.999991 + . ID=CGI_10006269; scaffold770 WUBlastX LINE_CR1 136986 137702 199 + . . scaffold770 GLEAN mRNA 137895 138275 0.999991 + . ID=CGI_10006269; scaffold770 WUBlastX LINE_L1-Tx1 138538 138924 136 + . . scaffold770 TRF Tandem_Repeat 145065 145219 193 + . . scaffold770 WUBlastX LTR_Gypsy-Cigr 147254 147640 76 - . . scaffold770 WUBlastX LTR_Gypsy 147413 147769 80 - . . scaffold770 WUBlastX LTR_Gypsy-Cigr 147678 147887 53 - . . scaffold771 GLEAN promoter 1272 2271 0.700708 + . ID=CGI_10013625; scaffold771 GLEAN mRNA 2272 5109 0.700708 + . ID=CGI_10013625; scaffold771 GLEAN promoter 4949 5948 0.999994 + . ID=CGI_10013626; scaffold771 GLEAN mRNA 5949 8143 0.999994 + . ID=CGI_10013626; scaffold771 TRF Tandem_Repeat 8411 9637 1126 + . . scaffold771 TRF Tandem_Repeat 8427 9588 1011 + . . scaffold771 TRF Tandem_Repeat 8468 9468 662 + . . scaffold771 TRF Tandem_Repeat 8478 8564 59 + . . scaffold771 TRF Tandem_Repeat 8584 8670 59 + . . scaffold771 TRF Tandem_Repeat 8690 8776 59 + . . scaffold771 GLEAN promoter 10763 11762 1 + . ID=CGI_10013627; scaffold771 GLEAN mRNA 11763 12581 1 + . ID=CGI_10013627; scaffold771 TRF Tandem_Repeat 13825 14101 401 + . . scaffold771 TRF Tandem_Repeat 13825 14101 446 + . . scaffold771 GLEAN promoter 16129 17128 0.185068 + . ID=CGI_10013628; scaffold771 TRF Tandem_Repeat 16984 17863 733 + . . scaffold771 TRF Tandem_Repeat 16984 17902 822 + . . scaffold771 GLEAN mRNA 17129 28873 0.185068 + . ID=CGI_10013628; scaffold771 GLEAN mRNA 19235 21046 1 - . ID=CGI_10013629; scaffold771 GLEAN promoter 21047 22046 1 - . ID=CGI_10013629; scaffold771 TRF Tandem_Repeat 24110 25602 2095 + . . scaffold771 TRF Tandem_Repeat 24110 25602 1735 + . . scaffold771 TRF Tandem_Repeat 24110 25602 2093 + . . scaffold771 GLEAN mRNA 28769 34757 1 - . ID=CGI_10013630; scaffold771 TRF Tandem_Repeat 28911 29644 806 + . . scaffold771 TRF Tandem_Repeat 28911 29561 795 + . . scaffold771 TRF Tandem_Repeat 28911 29561 770 + . . scaffold771 TRF Tandem_Repeat 28927 29552 563 + . . scaffold771 TRF Tandem_Repeat 34324 34374 102 + . . scaffold771 GLEAN promoter 34758 35757 1 - . ID=CGI_10013630; scaffold771 TRF Tandem_Repeat 36330 36375 67 + . . scaffold771 TRF Tandem_Repeat 37544 37593 91 + . . scaffold771 GLEAN mRNA 38504 43261 1 - . ID=CGI_10013631; scaffold771 TRF Tandem_Repeat 38781 39058 412 + . . scaffold771 GLEAN promoter 43262 44261 1 - . ID=CGI_10013631; scaffold771 GLEAN promoter 48493 49492 0.992407 + . ID=CGI_10013632; scaffold771 GLEAN mRNA 49493 54021 0.992407 + . ID=CGI_10013632; scaffold771 TRF Tandem_Repeat 60328 60530 302 + . . scaffold771 GLEAN promoter 63621 64620 0.914395 + . ID=CGI_10013633; scaffold771 GLEAN mRNA 64621 71777 0.914395 + . ID=CGI_10013633; scaffold771 TRF Tandem_Repeat 65422 65919 442 + . . scaffold771 TRF Tandem_Repeat 70804 71060 363 + . . scaffold771 GLEAN promoter 73490 74489 1 + . ID=CGI_10013634; scaffold771 GLEAN mRNA 74490 75262 1 + . ID=CGI_10013634; scaffold771 GLEAN mRNA 78206 115742 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 79352 79481 242 + . . scaffold771 TRF Tandem_Repeat 87832 88298 581 + . . scaffold771 TRF Tandem_Repeat 92460 92790 372 + . . scaffold771 TRF Tandem_Repeat 92547 92754 116 + . . scaffold771 TRF Tandem_Repeat 92556 92712 100 + . . scaffold771 TRF Tandem_Repeat 103928 104416 831 + . . scaffold771 TRF Tandem_Repeat 106347 106572 292 + . . scaffold771 TRF Tandem_Repeat 106355 106577 259 + . . scaffold771 TRF Tandem_Repeat 106759 107374 928 + . . scaffold771 GLEAN promoter 112212 113211 1 + . ID=CGI_10013636; scaffold771 GLEAN mRNA 113212 118227 1 + . ID=CGI_10013636; scaffold771 GLEAN promoter 115743 116742 0.909222 - . ID=CGI_10013635; scaffold771 TRF Tandem_Repeat 119508 120856 1456 + . . scaffold771 GLEAN mRNA 122093 127244 1 - . ID=CGI_10013637; scaffold771 GLEAN promoter 127245 128244 1 - . ID=CGI_10013637; scaffold771 GLEAN mRNA 134331 139644 0.607888 - . ID=CGI_10013638; scaffold771 GLEAN promoter 139645 140644 0.607888 - . ID=CGI_10013638; scaffold771 GLEAN mRNA 144570 166539 0.91116 - . ID=CGI_10013639; scaffold771 TRF Tandem_Repeat 145459 145498 53 + . . scaffold771 TRF Tandem_Repeat 145462 145498 65 + . . scaffold771 TRF Tandem_Repeat 152347 153595 1243 + . . scaffold771 TRF Tandem_Repeat 152347 153595 1387 + . . scaffold771 GLEAN promoter 166540 167539 0.91116 - . ID=CGI_10013639; scaffold771 GLEAN promoter 168818 169817 0.999358 + . ID=CGI_10013640; scaffold771 GLEAN mRNA 169818 179434 0.999358 + . ID=CGI_10013640; scaffold771 TRF Tandem_Repeat 174235 174278 79 + . . scaffold771 TRF Tandem_Repeat 182719 182778 120 + . . scaffold771 TRF Tandem_Repeat 185437 185492 103 + . . scaffold771 TRF Tandem_Repeat 185627 185653 54 + . . scaffold771 TRF Tandem_Repeat 186309 186376 109 + . . scaffold771 TRF Tandem_Repeat 188506 188542 74 + . . scaffold771 TRF Tandem_Repeat 191068 191126 55 + . . scaffold771 TRF Tandem_Repeat 191068 191135 64 + . . scaffold771 TRF Tandem_Repeat 198174 198230 105 + . . scaffold771 GLEAN mRNA 198410 199042 0.998077 - . ID=CGI_10013641; scaffold771 GLEAN promoter 199043 200042 0.998077 - . ID=CGI_10013641; scaffold771 TRF Tandem_Repeat 212951 213008 82 + . . scaffold771 TRF Tandem_Repeat 212951 213002 95 + . . scaffold771 TRF Tandem_Repeat 213754 213806 106 + . . scaffold771 TRF Tandem_Repeat 216431 216488 100 + . . scaffold771 TRF Tandem_Repeat 216434 216487 65 + . . scaffold771 WUBlastX LINE_L1-Tx1 222846 222908 29 + . . scaffold771 WUBlastX LINE_Tad1? 223087 223641 114 + . . scaffold771 WUBlastX LINE_L2 223189 224259 376 + . . scaffold771 WUBlastX LINE_L2 224145 224522 160 + . . scaffold771 TRF Tandem_Repeat 266283 266925 573 + . . scaffold771 TRF Tandem_Repeat 266485 266766 98 + . . scaffold771 GLEAN mRNA 268106 272283 1 - . ID=CGI_10013642; scaffold771 TRF Tandem_Repeat 270694 270931 199 + . . scaffold771 GLEAN promoter 272284 273283 1 - . ID=CGI_10013642; scaffold771 GLEAN promoter 273950 274949 0.972969 + . ID=CGI_10013643; scaffold771 GLEAN mRNA 274950 293577 0.972969 + . ID=CGI_10013643; scaffold771 TRF Tandem_Repeat 281609 282873 1827 + . . scaffold771 TRF Tandem_Repeat 285748 285886 260 + . . scaffold771 GLEAN mRNA 286517 289325 0.993364 - . ID=CGI_10013644; scaffold771 GLEAN promoter 289326 290325 0.993364 - . ID=CGI_10013644; scaffold771 GLEAN mRNA 298713 305559 0.643655 - . ID=CGI_10013645; scaffold771 TRF Tandem_Repeat 299675 299707 66 + . . scaffold771 TRF Tandem_Repeat 300679 300712 68 + . . scaffold771 TRF Tandem_Repeat 300844 301176 537 + . . scaffold771 GLEAN promoter 305560 306559 0.643655 - . ID=CGI_10013645; scaffold771 TRF Tandem_Repeat 315464 315488 50 + . . scaffold771 TRF Tandem_Repeat 315766 315790 50 + . . scaffold771 WUBlastX LINE_CR1-L2 317437 317532 20 + . . scaffold771 WUBlastX LINE_CR1-L2 317440 317514 23 + . . scaffold771 WUBlastX LINE_L2 317736 317969 61 + . . scaffold771 WUBlastX LINE_CR1-L2 317862 317963 77 + . . scaffold771 WUBlastX LINE_L2 317965 318045 57 + . . scaffold771 TRF Tandem_Repeat 321405 321441 74 + . . scaffold771 TRF Tandem_Repeat 324352 324377 52 + . . scaffold771 GLEAN mRNA 353270 355312 0.924206 - . ID=CGI_10013646; scaffold771 GLEAN promoter 355313 356312 0.924206 - . ID=CGI_10013646; scaffold771 GLEAN promoter 358964 359963 0.999676 + . ID=CGI_10013647; scaffold771 TRF Tandem_Repeat 359515 359595 125 + . . scaffold771 GLEAN mRNA 359964 364208 0.999676 + . ID=CGI_10013647; scaffold772 GLEAN mRNA 187 7625 1 - . ID=CGI_10016572; scaffold772 GLEAN promoter 7626 8625 1 - . ID=CGI_10016572; scaffold772 TRF Tandem_Repeat 14457 14551 102 + . . scaffold772 TRF Tandem_Repeat 14457 14551 100 + . . scaffold772 TRF Tandem_Repeat 15962 16008 94 + . . scaffold772 GLEAN mRNA 18897 26663 0.728086 - . ID=CGI_10016573; scaffold772 TRF Tandem_Repeat 19526 19838 366 + . . scaffold772 TRF Tandem_Repeat 23322 23365 63 + . . scaffold772 GLEAN promoter 26664 27663 0.728086 - . ID=CGI_10016573; scaffold772 GLEAN promoter 26988 27987 0.999984 + . ID=CGI_10016574; scaffold772 TRF Tandem_Repeat 27686 27748 119 + . . scaffold772 GLEAN mRNA 27988 30561 0.999984 + . ID=CGI_10016574; scaffold772 GLEAN mRNA 32739 66911 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 37718 37755 76 + . . scaffold772 TRF Tandem_Repeat 40120 40165 92 + . . scaffold772 TRF Tandem_Repeat 41295 41333 51 + . . scaffold772 TRF Tandem_Repeat 49950 50005 112 + . . scaffold772 TRF Tandem_Repeat 51801 51859 109 + . . scaffold772 TRF Tandem_Repeat 51985 52065 117 + . . scaffold772 TRF Tandem_Repeat 52980 53025 83 + . . scaffold772 WUBlastX LINE_Penelope 53469 53717 38 - . . scaffold772 WUBlastX LINE_Penelope 53544 53774 52 - . . scaffold772 WUBlastX LINE_Penelope 53783 53950 38 - . . scaffold772 WUBlastX LINE_Penelope 53786 53998 27 - . . scaffold772 WUBlastX LINE_RTE-X 57921 58634 192 + . . scaffold772 TRF Tandem_Repeat 64562 65565 1737 + . . scaffold772 TRF Tandem_Repeat 65707 65756 75 + . . scaffold772 TRF Tandem_Repeat 66137 66200 110 + . . scaffold772 GLEAN promoter 66912 67911 0.999897 - . ID=CGI_10016575; scaffold772 TRF Tandem_Repeat 68345 68398 74 + . . scaffold772 GLEAN mRNA 71205 73264 0.651135 - . ID=CGI_10016576; scaffold772 TRF Tandem_Repeat 72794 72849 112 + . . scaffold772 GLEAN promoter 73265 74264 0.651135 - . ID=CGI_10016576; scaffold772 TRF Tandem_Repeat 76373 76423 93 + . . scaffold772 TRF Tandem_Repeat 76542 76650 175 + . . scaffold772 TRF Tandem_Repeat 76772 76861 135 + . . scaffold772 TRF Tandem_Repeat 76772 76861 135 + . . scaffold772 TRF Tandem_Repeat 76772 76861 135 + . . scaffold772 GLEAN mRNA 77591 80628 1 - . ID=CGI_10016577; scaffold772 TRF Tandem_Repeat 79453 79642 123 + . . scaffold772 TRF Tandem_Repeat 79453 79616 188 + . . scaffold772 GLEAN promoter 80629 81628 1 - . ID=CGI_10016577; scaffold772 GLEAN mRNA 82978 84654 1 - . ID=CGI_10016578; scaffold772 GLEAN promoter 84655 85654 1 - . ID=CGI_10016578; scaffold772 TRF Tandem_Repeat 85432 85591 166 + . . scaffold772 TRF Tandem_Repeat 85432 85621 141 + . . scaffold772 TRF Tandem_Repeat 85479 85583 64 + . . scaffold772 GLEAN mRNA 90052 92666 0.999999 - . ID=CGI_10016579; scaffold772 TRF Tandem_Repeat 92531 92601 79 + . . scaffold772 GLEAN promoter 92667 93666 0.999999 - . ID=CGI_10016579; scaffold772 TRF Tandem_Repeat 93647 93681 52 + . . scaffold772 WUBlastX LTR_Pao 143594 144169 482 - . . scaffold772 WUBlastX LTR_Pao 143603 144391 225 - . . scaffold772 WUBlastX LTR_Pao 144619 145167 163 - . . scaffold772 WUBlastX LTR_Pao 144619 145020 383 - . . scaffold772 GLEAN mRNA 147267 148496 0.547627 - . ID=CGI_10016580; scaffold772 TRF Tandem_Repeat 147440 147641 354 + . . scaffold772 GLEAN promoter 148497 149496 0.547627 - . ID=CGI_10016580; scaffold772 GLEAN promoter 151748 152747 1 + . ID=CGI_10016581; scaffold772 TRF Tandem_Repeat 151774 151832 118 + . . scaffold772 TRF Tandem_Repeat 151830 151868 78 + . . scaffold772 GLEAN mRNA 152748 156377 1 + . ID=CGI_10016581; scaffold772 TRF Tandem_Repeat 154898 155498 612 + . . scaffold772 TRF Tandem_Repeat 159429 159500 101 + . . scaffold772 TRF Tandem_Repeat 159616 161181 2576 + . . scaffold772 GLEAN promoter 160838 161837 0.999763 + . ID=CGI_10016582; scaffold772 GLEAN mRNA 161838 162617 0.999763 + . ID=CGI_10016582; scaffold772 TRF Tandem_Repeat 162990 163076 122 + . . scaffold772 GLEAN promoter 167032 168031 0.911526 + . ID=CGI_10016583; scaffold772 TRF Tandem_Repeat 167187 167760 140 + . . scaffold772 TRF Tandem_Repeat 167287 167931 556 + . . scaffold772 TRF Tandem_Repeat 167287 167909 628 + . . scaffold772 TRF Tandem_Repeat 167332 167986 503 + . . scaffold772 GLEAN mRNA 168032 170880 0.911526 + . ID=CGI_10016583; scaffold772 TRF Tandem_Repeat 169358 169525 291 + . . scaffold772 TRF Tandem_Repeat 172033 172689 625 + . . scaffold772 TRF Tandem_Repeat 172034 172697 147 + . . scaffold772 GLEAN promoter 172305 173304 1 + . ID=CGI_10016584; scaffold772 GLEAN mRNA 173305 179319 1 + . ID=CGI_10016584; scaffold772 WUBlastX DNA_TcMar-Tc1 174587 174778 90 - . . scaffold772 WUBlastX DNA_TcMar-Tc1 174656 175300 181 - . . scaffold772 WUBlastX DNA_TcMar-Tc1 174755 175465 201 - . . scaffold772 WUBlastX DNA_TcMar-Tc1 174764 175300 222 - . . scaffold772 TRF Tandem_Repeat 177425 177549 241 + . . scaffold772 WUBlastX LINE_RTE-BovB 177718 177825 47 - . . scaffold772 TRF Tandem_Repeat 179343 179388 83 + . . scaffold772 GLEAN mRNA 180986 186775 0.594596 - . ID=CGI_10016585; scaffold772 GLEAN promoter 186776 187775 0.594596 - . ID=CGI_10016585; scaffold772 TRF Tandem_Repeat 186970 187078 155 + . . scaffold772 TRF Tandem_Repeat 188137 188899 938 + . . scaffold772 TRF Tandem_Repeat 192300 192334 70 + . . scaffold772 TRF Tandem_Repeat 201436 201507 64 + . . scaffold772 WUBlastX DNA_En-Spm 202376 203176 176 - . . scaffold772 WUBlastX DNA_En-Spm 202616 203494 256 - . . scaffold772 WUBlastX DNA_En-Spm 202622 203878 208 - . . scaffold772 WUBlastX DNA_En-Spm 203135 204280 140 - . . scaffold772 WUBlastX DNA_En-Spm 203231 204481 26 - . . scaffold772 TRF Tandem_Repeat 214881 214922 66 + . . scaffold772 GLEAN mRNA 219780 220868 0.596161 - . ID=CGI_10016586; scaffold772 GLEAN promoter 220869 221868 0.596161 - . ID=CGI_10016586; scaffold772 TRF Tandem_Repeat 226278 226333 112 + . . scaffold772 TRF Tandem_Repeat 231496 233383 2573 + . . scaffold772 GLEAN mRNA 238963 261048 0.714694 - . ID=CGI_10016587; scaffold772 WUBlastX DNA_hAT-Blackja 242430 242954 58 + . . scaffold772 WUBlastX DNA_hAT-Charlie 242445 242873 63 + . . scaffold772 WUBlastX DNA_hAT-Blackja 242463 242822 77 + . . scaffold772 WUBlastX DNA_hAT-hAT5 243667 243828 54 + . . scaffold772 TRF Tandem_Repeat 253137 253168 64 + . . scaffold772 TRF Tandem_Repeat 254089 254130 84 + . . scaffold772 TRF Tandem_Repeat 256286 256386 202 + . . scaffold772 TRF Tandem_Repeat 257804 257845 84 + . . scaffold772 TRF Tandem_Repeat 259830 259883 74 + . . scaffold772 GLEAN promoter 261049 262048 0.714694 - . ID=CGI_10016587; scaffold772 TRF Tandem_Repeat 261948 262054 142 + . . scaffold772 GLEAN promoter 263057 264056 0.999981 + . ID=CGI_10016589; scaffold772 TRF Tandem_Repeat 263651 263740 99 + . . scaffold772 TRF Tandem_Repeat 263706 263796 137 + . . scaffold772 GLEAN mRNA 264057 275816 0.999981 + . ID=CGI_10016589; scaffold772 TRF Tandem_Repeat 272367 273160 1157 + . . scaffold772 GLEAN promoter 276746 277745 1 + . ID=CGI_10016590; scaffold772 GLEAN mRNA 277746 285976 1 + . ID=CGI_10016590; scaffold772 WUBlastX DNA_PiggyBac 281926 282408 93 + . . scaffold772 WUBlastX DNA_PiggyBac 282061 282405 108 + . . scaffold772 WUBlastX DNA_PiggyBac 282127 282486 47 + . . scaffold772 WUBlastX DNA_PiggyBac 282598 282726 73 + . . scaffold772 WUBlastX DNA_PiggyBac 283352 283471 69 + . . scaffold772 WUBlastX DNA_PiggyBac 283905 284060 50 + . . scaffold772 WUBlastX DNA_PiggyBac 285039 285143 36 + . . scaffold772 WUBlastX DNA_PiggyBac 285176 285244 20 + . . scaffold772 WUBlastX DNA_PiggyBac 285389 285679 30 + . . scaffold772 WUBlastX DNA_PiggyBac 285485 285949 154 + . . scaffold772 GLEAN promoter 313265 314264 0.756718 + . ID=CGI_10016592; scaffold772 GLEAN mRNA 314265 320062 0.756718 + . ID=CGI_10016592; scaffold772 TRF Tandem_Repeat 317130 317393 413 + . . scaffold772 TRF Tandem_Repeat 320850 320883 59 + . . scaffold772 TRF Tandem_Repeat 325014 325059 57 + . . scaffold772 TRF Tandem_Repeat 325017 325058 50 + . . scaffold772 GLEAN mRNA 325563 326366 0.734521 - . ID=CGI_10016593; scaffold772 GLEAN promoter 326367 327366 0.734521 - . ID=CGI_10016593; scaffold772 TRF Tandem_Repeat 329552 329607 112 + . . scaffold772 TRF Tandem_Repeat 329998 330093 113 + . . scaffold772 TRF Tandem_Repeat 331326 331376 95 + . . scaffold772 TRF Tandem_Repeat 331679 331773 154 + . . scaffold772 TRF Tandem_Repeat 335224 335468 253 + . . scaffold772 TRF Tandem_Repeat 335465 335721 205 + . . scaffold772 GLEAN promoter 335765 336764 0.544674 + . ID=CGI_10016594; scaffold772 GLEAN mRNA 336765 344045 0.544674 + . ID=CGI_10016594; scaffold772 WUBlastX LINE_RTE-X 338912 339397 117 + . . scaffold772 WUBlastX LTR_Ngaro 339386 339712 193 + . . scaffold772 WUBlastX LTR_Ngaro 339718 340446 279 + . . scaffold772 WUBlastX LTR_Ngaro 340543 341367 305 + . . scaffold772 WUBlastX LINE_L2 352680 353084 247 + . . scaffold772 WUBlastX DNA_Sola 358829 358930 59 - . . scaffold772 WUBlastX DNA_Sola 359283 359462 32 - . . scaffold772 TRF Tandem_Repeat 360546 360580 70 + . . scaffold772 TRF Tandem_Repeat 362015 362048 52 + . . scaffold772 TRF Tandem_Repeat 364103 365766 2388 + . . scaffold772 TRF Tandem_Repeat 365964 366021 55 + . . scaffold772 TRF Tandem_Repeat 365964 366020 71 + . . scaffold772 TRF Tandem_Repeat 367751 367880 84 + . . scaffold772 TRF Tandem_Repeat 377436 377915 397 + . . scaffold772 TRF Tandem_Repeat 377461 377500 53 + . . scaffold772 TRF Tandem_Repeat 377840 377871 50 + . . scaffold772 WUBlastX DNA_Kolobok-IS4 406750 407010 51 - . . scaffold772 WUBlastX DNA_IS4EU 406783 407070 31 - . . scaffold772 WUBlastX DNA_Maverick 408736 408867 33 - . . scaffold772 WUBlastX DNA_Maverick 408771 408959 33 - . . scaffold772 WUBlastX DNA_Maverick 409222 409422 85 - . . scaffold772 TRF Tandem_Repeat 417560 417608 57 + . . scaffold772 WUBlastX LTR_Gypsy 432669 433010 59 + . . scaffold772 WUBlastX DNA_hAT-Tip100 433340 434011 145 - . . scaffold772 WUBlastX DNA_hAT-Tip100 434049 434873 366 - . . scaffold772 WUBlastX DNA_hAT-Tip100 435181 435705 114 - . . scaffold772 WUBlastX LTR_Gypsy 436360 436749 81 + . . scaffold772 WUBlastX LTR_Gypsy 436465 436755 86 + . . scaffold772 WUBlastX LTR_Gypsy 436546 436749 86 + . . scaffold772 WUBlastX LTR_Gypsy 436607 437278 398 + . . scaffold772 WUBlastX LTR_Gypsy 436748 437410 373 + . . scaffold772 WUBlastX LTR_Gypsy-Cigr 436748 437293 515 + . . scaffold772 WUBlastX LTR_Gypsy 436751 437599 261 + . . scaffold772 WUBlastX LTR_Gypsy 437766 437882 35 + . . scaffold772 WUBlastX LTR_Gypsy 437808 437912 44 + . . scaffold772 WUBlastX LTR_Gypsy 437820 437882 44 + . . scaffold772 WUBlastX LTR_Gypsy 437820 437933 36 + . . scaffold772 WUBlastX LTR_Gypsy 437963 438091 50 + . . scaffold772 WUBlastX LTR_Gypsy 437984 438091 79 + . . scaffold772 WUBlastX LTR_Gypsy 438088 438570 166 + . . scaffold772 WUBlastX LTR_Gypsy 438094 438399 204 + . . scaffold772 TRF Tandem_Repeat 444161 444198 60 + . . scaffold772 TRF Tandem_Repeat 444254 444303 100 + . . scaffold772 GLEAN mRNA 445754 446792 0.93779 - . ID=CGI_10016595; scaffold772 GLEAN promoter 446793 447792 0.93779 - . ID=CGI_10016595; scaffold772 TRF Tandem_Repeat 448499 448586 142 + . . scaffold772 WUBlastX LTR_DIRS 449772 450419 48 - . . scaffold772 WUBlastX LTR_DIRS? 449921 450589 55 - . . scaffold772 TRF Tandem_Repeat 450965 451293 338 + . . scaffold772 WUBlastX LTR_DIRS 451778 452335 200 - . . scaffold773 GLEAN mRNA 582 1562 0.836235 - . ID=CGI_10011339; scaffold773 GLEAN promoter 1563 2562 0.836235 - . ID=CGI_10011339; scaffold773 GLEAN mRNA 1810 6618 0.834219 - . ID=CGI_10011340; scaffold773 TRF Tandem_Repeat 4994 5107 174 + . . scaffold773 TRF Tandem_Repeat 4994 5107 174 + . . scaffold773 TRF Tandem_Repeat 4994 5107 174 + . . scaffold773 GLEAN promoter 6619 7618 0.834219 - . ID=CGI_10011340; scaffold773 GLEAN mRNA 9303 18869 0.52374 - . ID=CGI_10011341; scaffold773 TRF Tandem_Repeat 9911 9944 50 + . . scaffold773 WUBlastX LTR_Gypsy 10324 10494 23 - . . scaffold773 WUBlastX LTR_Copia 10369 10575 55 - . . scaffold773 WUBlastX LTR_Gypsy-Cigr 10393 10809 53 - . . scaffold773 WUBlastX LTR_Gypsy-Cigr 10823 11098 92 - . . scaffold773 TRF Tandem_Repeat 11752 11799 96 + . . scaffold773 WUBlastX DNA_Crypton 15163 15624 161 - . . scaffold773 WUBlastX DNA_Crypton 15685 15855 64 - . . scaffold773 WUBlastX DNA_Crypton 16216 16575 110 - . . scaffold773 GLEAN promoter 18870 19869 0.52374 - . ID=CGI_10011341; scaffold773 WUBlastX LTR_Ngaro 19449 19547 34 + . . scaffold773 WUBlastX LTR_Ngaro 19771 19938 55 + . . scaffold773 WUBlastX LTR_Ngaro 20539 20832 32 + . . scaffold773 TRF Tandem_Repeat 24990 25075 165 + . . scaffold773 WUBlastX DNA_Harbinger 26065 26241 96 - . . scaffold773 WUBlastX DNA_Harbinger 26235 26336 35 - . . scaffold773 TRF Tandem_Repeat 41516 41575 120 + . . scaffold773 TRF Tandem_Repeat 61997 62040 70 + . . scaffold773 TRF Tandem_Repeat 62038 62085 57 + . . scaffold773 TRF Tandem_Repeat 65164 65214 102 + . . scaffold773 TRF Tandem_Repeat 68355 68382 56 + . . scaffold773 WUBlastX LTR_Gypsy 69088 69276 23 - . . scaffold773 WUBlastX LTR_Gypsy 69145 69468 23 - . . scaffold773 WUBlastX LTR_ERV1 69145 69369 40 - . . scaffold773 TRF Tandem_Repeat 69511 69544 50 + . . scaffold773 WUBlastX LINE_L1-Tx1 70420 71997 42 - . . scaffold773 WUBlastX LINE_L1 71303 71542 97 - . . scaffold773 WUBlastX LINE_L1 71509 72003 132 - . . scaffold773 WUBlastX LINE_L1 71605 71994 163 - . . scaffold773 TRF Tandem_Repeat 72047 72096 57 + . . scaffold773 TRF Tandem_Repeat 72266 73507 1660 + . . scaffold773 GLEAN mRNA 73940 75494 0.679202 - . ID=CGI_10011342; scaffold773 GLEAN promoter 75495 76494 0.679202 - . ID=CGI_10011342; scaffold773 TRF Tandem_Repeat 109050 109111 71 + . . scaffold773 TRF Tandem_Repeat 109050 109099 64 + . . scaffold773 GLEAN mRNA 111217 114724 0.889313 - . ID=CGI_10011343; scaffold773 TRF Tandem_Repeat 111868 112017 255 + . . scaffold773 GLEAN promoter 114725 115724 0.889313 - . ID=CGI_10011343; scaffold773 WUBlastX LINE_L2 116487 116621 64 + . . scaffold773 WUBlastX LINE_L2 116858 117262 37 + . . scaffold773 WUBlastX LINE_L2 116951 117262 39 + . . scaffold773 WUBlastX LINE_L2 117095 117313 46 + . . scaffold773 TRF Tandem_Repeat 117880 117926 94 + . . scaffold773 TRF Tandem_Repeat 121483 121543 104 + . . scaffold773 TRF Tandem_Repeat 122274 122340 80 + . . scaffold773 TRF Tandem_Repeat 122672 123036 115 + . . scaffold773 TRF Tandem_Repeat 122674 123057 182 + . . scaffold773 TRF Tandem_Repeat 122758 123062 207 + . . scaffold773 TRF Tandem_Repeat 124032 124385 299 + . . scaffold773 TRF Tandem_Repeat 124046 124385 233 + . . scaffold773 TRF Tandem_Repeat 125390 125765 260 + . . scaffold773 TRF Tandem_Repeat 125390 125767 261 + . . scaffold773 TRF Tandem_Repeat 125403 125765 218 + . . scaffold773 TRF Tandem_Repeat 125404 125767 250 + . . scaffold773 TRF Tandem_Repeat 128250 128335 172 + . . scaffold773 TRF Tandem_Repeat 130211 130236 52 + . . scaffold773 TRF Tandem_Repeat 130240 130288 89 + . . scaffold773 GLEAN mRNA 136190 154303 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 142896 142940 90 + . . scaffold773 TRF Tandem_Repeat 143624 143689 114 + . . scaffold773 TRF Tandem_Repeat 143780 143825 92 + . . scaffold773 TRF Tandem_Repeat 144127 144156 60 + . . scaffold773 TRF Tandem_Repeat 144463 144523 61 + . . scaffold773 TRF Tandem_Repeat 147209 147254 92 + . . scaffold773 TRF Tandem_Repeat 147254 147306 88 + . . scaffold773 TRF Tandem_Repeat 148975 149004 60 + . . scaffold773 TRF Tandem_Repeat 149004 149034 53 + . . scaffold773 WUBlastX LINE_L2 150710 150892 40 + . . scaffold773 WUBlastX LINE_L2 150756 150938 30 + . . scaffold773 WUBlastX LINE_L2 150882 150950 25 + . . scaffold773 WUBlastX LINE_L2 150964 151032 29 + . . scaffold773 WUBlastX LINE_L2 151156 151680 64 + . . scaffold773 WUBlastX LINE_L2 151324 151680 113 + . . scaffold773 GLEAN promoter 154304 155303 0.840493 - . ID=CGI_10011344; scaffold773 TRF Tandem_Repeat 156001 156026 52 + . . scaffold773 TRF Tandem_Repeat 156026 156088 108 + . . scaffold773 TRF Tandem_Repeat 164702 164762 52 + . . scaffold773 TRF Tandem_Repeat 164707 164765 63 + . . scaffold773 TRF Tandem_Repeat 165603 165635 57 + . . scaffold773 TRF Tandem_Repeat 168261 169013 1034 + . . scaffold773 WUBlastX LTR_Pao 170964 176408 2249 - . . scaffold773 WUBlastX LTR_Pao 170964 175034 2946 - . . scaffold773 WUBlastX LTR_Pao 175305 176849 353 - . . scaffold773 TRF Tandem_Repeat 177647 177698 68 + . . scaffold773 WUBlastX DNA_IS4EU 182107 182160 24 + . . scaffold773 WUBlastX DNA_IS4EU 182696 182779 33 + . . scaffold773 WUBlastX DNA_IS4EU 183051 183236 100 + . . scaffold773 WUBlastX DNA_Kolobok-IS4 183340 184092 334 - . . scaffold773 TRF Tandem_Repeat 186443 187659 1946 + . . scaffold773 WUBlastX DNA_Kolobok-IS4 188639 188761 27 + . . scaffold773 WUBlastX DNA_Kolobok-IS4 188983 189096 23 + . . scaffold773 WUBlastX DNA_Kolobok-IS4 189037 189108 33 + . . scaffold773 WUBlastX DNA_IS4EU 189174 189347 74 + . . scaffold773 WUBlastX DNA_Kolobok-IS4 189451 189843 240 - . . scaffold773 WUBlastX DNA_IS4EU 189864 190295 69 - . . scaffold773 GLEAN promoter 190166 191165 0.998027 + . ID=CGI_10011345; scaffold773 GLEAN mRNA 191166 196246 0.998027 + . ID=CGI_10011345; scaffold773 WUBlastX DNA_hAT-Tip100 193015 193380 36 + . . scaffold773 WUBlastX DNA_hAT 193347 193778 99 + . . scaffold773 WUBlastX DNA_hAT 193778 194170 62 + . . scaffold773 WUBlastX DNA_hAT 193874 194173 109 + . . scaffold773 WUBlastX DNA_hAT-Tip100 194504 194590 25 + . . scaffold773 WUBlastX DNA_hAT-Tip100 195324 195488 25 + . . scaffold773 GLEAN promoter 203807 204806 0.999984 + . ID=CGI_10011346; scaffold773 GLEAN mRNA 204807 205142 0.999984 + . ID=CGI_10011346; scaffold773 WUBlastX DNA_TcMar-Marin 210247 210537 65 + . . scaffold773 WUBlastX DNA_TcMar-Marin 210334 210480 73 + . . scaffold773 GLEAN promoter 210930 211929 0.618186 + . ID=CGI_10011347; scaffold773 GLEAN mRNA 211930 212172 0.618186 + . ID=CGI_10011347; scaffold773 WUBlastX LINE_CR1 215635 216009 43 - . . scaffold773 WUBlastX LINE_CR1-L2 216126 216629 73 - . . scaffold773 WUBlastX LINE_RTE-X 216742 217044 28 + . . scaffold773 WUBlastX LINE_RTE-X 216799 217038 55 + . . scaffold773 WUBlastX LINE_RTE-X 216880 217044 59 + . . scaffold773 WUBlastX LINE_L2 216880 217092 33 + . . scaffold773 WUBlastX LINE_RTE-BovB 217728 218564 102 + . . scaffold773 WUBlastX LINE_RTE-X 217830 218537 301 + . . scaffold773 WUBlastX LINE_RTE-X 218476 218835 30 + . . scaffold773 TRF Tandem_Repeat 224470 224523 108 + . . scaffold773 WUBlastX LINE_L2 230976 231752 89 - . . scaffold773 WUBlastX LINE_CR1-L2 230979 231617 135 - . . scaffold773 WUBlastX LINE_L2 230988 231497 155 - . . scaffold773 GLEAN mRNA 235107 267865 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX DNA_Maverick 235331 235966 410 - . . scaffold773 TRF Tandem_Repeat 236568 236594 54 + . . scaffold773 WUBlastX DNA_Maverick 239008 239511 207 - . . scaffold773 WUBlastX DNA_Maverick 239161 240051 424 - . . scaffold773 WUBlastX DNA_Maverick 239998 240576 28 - . . scaffold773 WUBlastX DNA_Maverick 240088 240432 123 - . . scaffold773 WUBlastX DNA_Maverick 240711 240761 33 - . . scaffold773 WUBlastX DNA_Maverick 240764 240871 32 - . . scaffold773 WUBlastX DNA_Harbinger 243319 243492 84 + . . scaffold773 TRF Tandem_Repeat 244932 244968 56 + . . scaffold773 WUBlastX DNA_Harbinger 259016 259177 44 - . . scaffold773 WUBlastX LTR_Gypsy 266699 267247 28 + . . scaffold773 WUBlastX LTR_Copia 266714 267043 43 + . . scaffold773 WUBlastX LTR_Gypsy 266819 266980 56 + . . scaffold773 WUBlastX LTR_Gypsy 267198 267527 27 + . . scaffold773 WUBlastX LTR_Gypsy 267303 267530 62 + . . scaffold773 WUBlastX LTR_Gypsy 267321 267572 46 + . . scaffold773 GLEAN promoter 267866 268865 0.138953 - . ID=CGI_10011348; scaffold773 WUBlastX LTR_Gypsy 267925 268437 41 + . . scaffold773 WUBlastX LTR_Gypsy-Cigr 267961 268344 64 + . . scaffold773 WUBlastX LTR_Gypsy 268423 268569 22 + . . scaffold773 WUBlastX LTR_Gypsy 268496 268873 46 + . . scaffold773 WUBlastX LTR_Gypsy-Cigr 268553 268960 93 + . . scaffold773 WUBlastX LTR_Gypsy 268712 268933 100 + . . scaffold773 WUBlastX LTR_Gypsy 268941 269372 179 + . . scaffold773 WUBlastX LTR_Gypsy 269161 269838 204 + . . scaffold773 WUBlastX LTR_Gypsy-Cigr 269365 269841 346 + . . scaffold773 WUBlastX LTR_Gypsy 269834 269938 27 + . . scaffold773 WUBlastX LTR_Gypsy 269834 269887 37 + . . scaffold773 TRF Tandem_Repeat 270012 270067 64 + . . scaffold773 WUBlastX LTR_Gypsy 270126 270350 82 + . . scaffold773 WUBlastX LTR_Gypsy 270174 270359 118 + . . scaffold773 WUBlastX LTR_Gypsy 270337 270777 272 + . . scaffold773 WUBlastX LTR_Gypsy-Troyk 270703 270810 30 + . . scaffold773 GLEAN promoter 271730 272729 0.512673 + . ID=CGI_10011349; scaffold773 WUBlastX LTR_Gypsy 272008 272388 85 + . . scaffold773 WUBlastX LTR_Gypsy-Cigr 272011 272250 120 + . . scaffold773 WUBlastX LTR_Gypsy 272038 272316 110 + . . scaffold773 GLEAN mRNA 272730 272945 0.512673 + . ID=CGI_10011349; scaffold773 TRF Tandem_Repeat 280449 280494 92 + . . scaffold773 WUBlastX LINE_L1-Tx1 283152 283307 49 - . . scaffold773 WUBlastX LINE_L1 283424 283657 49 - . . scaffold773 WUBlastX LINE_L1 283424 283702 25 - . . scaffold773 WUBlastX LINE_L1-Tx1 284461 285057 75 - . . scaffold773 WUBlastX LINE_L1-Tx1 284761 285057 113 - . . scaffold773 WUBlastX LINE_L1 284788 285108 73 - . . scaffold773 WUBlastX LINE_L1-Tx1 284791 285024 115 - . . scaffold773 WUBlastX LINE_L1 285027 285203 23 - . . scaffold775 TRF Tandem_Repeat 12622 12656 63 + . . scaffold775 TRF Tandem_Repeat 12783 12869 84 + . . scaffold775 TRF Tandem_Repeat 12783 12869 84 + . . scaffold775 TRF Tandem_Repeat 12783 12869 84 + . . scaffold775 TRF Tandem_Repeat 20155 20185 53 + . . scaffold775 WUBlastX LINE_L1-Tx1 36606 36923 32 - . . scaffold775 WUBlastX LINE_L1-Tx1 36917 37201 49 - . . scaffold775 TRF Tandem_Repeat 42551 42632 74 + . . scaffold775 TRF Tandem_Repeat 42551 42628 57 + . . scaffold775 TRF Tandem_Repeat 52562 52676 72 + . . scaffold775 WUBlastX LINE_RTE-X 54521 54658 53 + . . scaffold775 WUBlastX LINE_RTE-X 54521 54727 41 + . . scaffold775 WUBlastX LINE_RTE-X 54527 54682 49 + . . scaffold775 WUBlastX LINE_RTE-X 54527 54808 23 + . . scaffold775 GLEAN promoter 65717 66716 1 + . ID=CGI_10006088; scaffold775 GLEAN mRNA 66717 76854 1 + . ID=CGI_10006088; scaffold775 TRF Tandem_Repeat 71405 71449 72 + . . scaffold775 TRF Tandem_Repeat 71409 71458 52 + . . scaffold775 GLEAN mRNA 80038 83905 1 - . ID=CGI_10006089; scaffold775 TRF Tandem_Repeat 81535 82087 687 + . . scaffold775 TRF Tandem_Repeat 81535 82087 765 + . . scaffold775 TRF Tandem_Repeat 81535 82087 826 + . . scaffold775 GLEAN promoter 83906 84905 1 - . ID=CGI_10006089; scaffold775 TRF Tandem_Repeat 97500 97528 51 + . . scaffold775 TRF Tandem_Repeat 97973 98727 1219 + . . scaffold775 GLEAN promoter 105705 106704 0.801676 + . ID=CGI_10006090; scaffold775 GLEAN mRNA 106705 108283 0.801676 + . ID=CGI_10006090; scaffold775 GLEAN mRNA 115517 116176 0.999137 - . ID=CGI_10006091; scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 115843 64 - . . scaffold775 WUBlastX DNA_Kolobok-Hyd 115529 116221 49 - . . scaffold775 WUBlastX DNA_Kolobok-Hyd 115961 116317 44 - . . scaffold775 GLEAN promoter 116177 117176 0.999137 - . ID=CGI_10006091; scaffold775 TRF Tandem_Repeat 117366 117422 53 + . . scaffold775 WUBlastX LINE_L1-Tx1 123385 123726 53 + . . scaffold775 GLEAN promoter 123891 124890 0.999261 + . ID=CGI_10006092; scaffold775 GLEAN promoter 124809 125808 0.999481 + . ID=CGI_10006093; scaffold775 GLEAN mRNA 124891 125805 0.999261 + . ID=CGI_10006092; scaffold775 GLEAN mRNA 125809 126728 0.999481 + . ID=CGI_10006093; scaffold775 GLEAN promoter 126511 127510 0.997009 + . ID=CGI_10006094; scaffold775 GLEAN mRNA 127511 130349 0.997009 + . ID=CGI_10006094; scaffold775 WUBlastX DNA_Merlin 127917 128264 47 + . . scaffold775 WUBlastX DNA_Merlin 128605 129036 140 + . . scaffold775 GLEAN promoter 130840 131839 0.775544 + . ID=CGI_10006095; scaffold775 GLEAN promoter 131129 132128 0.999372 + . ID=CGI_10006096; scaffold775 WUBlastX LINE_L1-Tx1 131495 131854 56 + . . scaffold775 WUBlastX LINE_L1 131576 131860 70 + . . scaffold775 GLEAN promoter 131627 132626 0.986676 + . ID=CGI_10006097; scaffold775 GLEAN mRNA 131840 132127 0.775544 + . ID=CGI_10006095; scaffold775 GLEAN mRNA 132129 132368 0.999372 + . ID=CGI_10006096; scaffold775 GLEAN mRNA 132627 132983 0.986676 + . ID=CGI_10006097; scaffold775 WUBlastX LINE_L1-Tx1 133109 133438 26 + . . scaffold775 WUBlastX LINE_L1-Tx1 133151 133417 38 + . . scaffold775 WUBlastX LINE_L1-Tx1 133190 133414 41 + . . scaffold775 WUBlastX DNA_Harbinger 137667 138257 49 - . . scaffold775 WUBlastX DNA_Harbinger 137763 138239 204 - . . scaffold775 WUBlastX DNA_Harbinger 138226 138342 22 - . . scaffold775 WUBlastX DNA_Harbinger 138244 138297 26 - . . scaffold775 WUBlastX DNA_Harbinger 138341 138508 23 - . . scaffold776 GLEAN promoter 1 458 0.92732 + . ID=CGI_10002828; scaffold776 GLEAN mRNA 459 3971 0.92732 + . ID=CGI_10002828; scaffold776 TRF Tandem_Repeat 1291 1327 74 + . . scaffold776 TRF Tandem_Repeat 4067 4121 110 + . . scaffold776 TRF Tandem_Repeat 11886 11948 63 + . . scaffold776 TRF Tandem_Repeat 12792 12895 93 + . . scaffold776 WUBlastX LTR_Ngaro 13740 14300 228 - . . scaffold776 TRF Tandem_Repeat 50474 50593 91 + . . scaffold78 GLEAN promoter 2679 3678 0.999675 + . ID=CGI_10006912; scaffold78 GLEAN mRNA 3679 18879 0.999675 + . ID=CGI_10006912; scaffold78 TRF Tandem_Repeat 20856 20969 203 + . . scaffold78 GLEAN promoter 25694 26693 1 + . ID=CGI_10006913; scaffold78 TRF Tandem_Repeat 26154 26193 80 + . . scaffold78 GLEAN mRNA 26694 31041 1 + . ID=CGI_10006913; scaffold78 GLEAN promoter 32688 33687 0.504298 + . ID=CGI_10006914; scaffold78 GLEAN mRNA 33688 45299 0.504298 + . ID=CGI_10006914; scaffold78 TRF Tandem_Repeat 37269 37350 164 + . . scaffold78 WUBlastX LTR_Gypsy 38495 38755 84 + . . scaffold78 WUBlastX LTR_Gypsy 38648 38926 69 + . . scaffold78 WUBlastX LTR_Gypsy 38648 38788 115 + . . scaffold78 WUBlastX LTR_Gypsy-Cigr 38648 38881 111 + . . scaffold78 WUBlastX LTR_Gypsy 38878 38982 28 + . . scaffold78 TRF Tandem_Repeat 41628 41734 124 + . . scaffold78 WUBlastX DNA_Merlin 45724 46092 108 + . . scaffold78 WUBlastX LTR_Gypsy 51097 51372 25 - . . scaffold78 WUBlastX LTR_Gypsy 51157 51336 35 - . . scaffold78 WUBlastX LTR_Gypsy 51205 51375 35 - . . scaffold78 WUBlastX LTR_Gypsy 51251 51832 149 - . . scaffold78 WUBlastX LTR_Gypsy-Cigr 51392 51841 267 - . . scaffold78 WUBlastX LTR_Gypsy 51846 51953 35 - . . scaffold78 WUBlastX LTR_Gypsy 51867 52532 568 - . . scaffold78 WUBlastX LTR_Gypsy 51867 52736 391 - . . scaffold78 WUBlastX LTR_ERV1 52107 52856 132 - . . scaffold78 WUBlastX LTR_Gypsy 65734 66630 208 - . . scaffold78 WUBlastX LTR_Gypsy 66599 67039 398 - . . scaffold78 WUBlastX LINE_Penelope 78529 79056 39 - . . scaffold78 TRF Tandem_Repeat 87884 87994 96 + . . scaffold78 TRF Tandem_Repeat 88464 88514 102 + . . scaffold78 GLEAN mRNA 98652 99695 0.978003 - . ID=CGI_10006915; scaffold78 GLEAN promoter 99696 100695 0.978003 - . ID=CGI_10006915; scaffold78 GLEAN mRNA 127507 134383 0.999992 - . ID=CGI_10006916; scaffold78 WUBlastX LINE_RTE-X 128337 128474 29 + . . scaffold78 GLEAN promoter 134384 135383 0.999992 - . ID=CGI_10006916; scaffold78 GLEAN mRNA 135718 142752 0.679196 - . ID=CGI_10006917; scaffold78 GLEAN promoter 136301 137300 1 + . ID=CGI_10006918; scaffold78 GLEAN mRNA 137301 138388 1 + . ID=CGI_10006918; scaffold78 GLEAN promoter 142086 143085 1 + . ID=CGI_10006919; scaffold78 GLEAN promoter 142753 143752 0.679196 - . ID=CGI_10006917; scaffold78 GLEAN mRNA 143086 144310 1 + . ID=CGI_10006919; scaffold78 TRF Tandem_Repeat 148751 148794 54 + . . scaffold78 GLEAN mRNA 149675 150979 0.884621 - . ID=CGI_10006920; scaffold78 GLEAN promoter 150980 151979 0.884621 - . ID=CGI_10006920; scaffold78 TRF Tandem_Repeat 155047 155701 893 + . . scaffold78 GLEAN mRNA 158121 159601 1 - . ID=CGI_10006921; scaffold78 GLEAN promoter 158921 159920 1 + . ID=CGI_10006922; scaffold78 GLEAN promoter 159602 160601 1 - . ID=CGI_10006921; scaffold78 GLEAN mRNA 159921 161703 1 + . ID=CGI_10006922; scaffold780 GLEAN promoter 2140 3139 0.913015 + . ID=CGI_10024708; scaffold780 GLEAN mRNA 3140 21470 0.913015 + . ID=CGI_10024708; scaffold780 TRF Tandem_Repeat 21280 21328 98 + . . scaffold780 TRF Tandem_Repeat 22867 22929 126 + . . scaffold780 GLEAN mRNA 27916 40142 0.99886 - . ID=CGI_10024709; scaffold780 TRF Tandem_Repeat 38396 38450 110 + . . scaffold780 TRF Tandem_Repeat 39228 39257 53 + . . scaffold780 GLEAN promoter 40143 41142 0.99886 - . ID=CGI_10024709; scaffold780 TRF Tandem_Repeat 40194 40650 630 + . . scaffold780 TRF Tandem_Repeat 40194 40653 762 + . . scaffold780 TRF Tandem_Repeat 41065 41207 132 + . . scaffold780 GLEAN mRNA 41209 44400 1 - . ID=CGI_10024710; scaffold780 GLEAN promoter 44401 45400 1 - . ID=CGI_10024710; scaffold780 TRF Tandem_Repeat 46780 46847 72 + . . scaffold780 GLEAN mRNA 48621 66264 0.999998 - . ID=CGI_10024711; scaffold780 TRF Tandem_Repeat 58909 59010 73 + . . scaffold780 TRF Tandem_Repeat 59099 59464 533 + . . scaffold780 TRF Tandem_Repeat 62121 62189 66 + . . scaffold780 TRF Tandem_Repeat 62121 62189 75 + . . scaffold780 TRF Tandem_Repeat 62139 62189 61 + . . scaffold780 GLEAN promoter 66265 67264 0.999998 - . ID=CGI_10024711; scaffold780 GLEAN mRNA 88184 90800 0.996819 - . ID=CGI_10024712; scaffold780 GLEAN promoter 89902 90901 0.414702 + . ID=CGI_10024713; scaffold780 GLEAN promoter 90801 91800 0.996819 - . ID=CGI_10024712; scaffold780 GLEAN mRNA 90902 99839 0.414702 + . ID=CGI_10024713; scaffold780 TRF Tandem_Repeat 91377 91850 338 + . . scaffold780 TRF Tandem_Repeat 91377 91822 370 + . . scaffold780 GLEAN mRNA 93312 96678 0.999323 - . ID=CGI_10024714; scaffold780 TRF Tandem_Repeat 95075 95303 189 + . . scaffold780 TRF Tandem_Repeat 95138 95237 128 + . . scaffold780 GLEAN promoter 96679 97678 0.999323 - . ID=CGI_10024714; scaffold780 GLEAN mRNA 102679 103206 0.999376 - . ID=CGI_10024715; scaffold780 GLEAN promoter 103207 104206 0.999376 - . ID=CGI_10024715; scaffold780 GLEAN promoter 105920 106919 0.902331 + . ID=CGI_10024716; scaffold780 TRF Tandem_Repeat 106043 106071 58 + . . scaffold780 GLEAN mRNA 106920 113833 0.902331 + . ID=CGI_10024716; scaffold780 GLEAN promoter 120153 121152 0.595749 + . ID=CGI_10024717; scaffold780 GLEAN mRNA 121153 138946 0.595749 + . ID=CGI_10024717; scaffold780 GLEAN promoter 137989 138988 0.986281 + . ID=CGI_10024719; scaffold780 GLEAN mRNA 138719 142358 0.726994 - . ID=CGI_10024718; scaffold780 GLEAN mRNA 138989 166483 0.986281 + . ID=CGI_10024719; scaffold780 GLEAN promoter 142359 143358 0.726994 - . ID=CGI_10024718; scaffold780 TRF Tandem_Repeat 144623 144649 54 + . . scaffold780 WUBlastX LINE_L2 149823 150161 93 - . . scaffold780 WUBlastX LINE_L2 149927 150487 101 - . . scaffold780 WUBlastX LINE_L2 150164 150481 151 - . . scaffold780 WUBlastX LINE_L2 150167 150931 111 - . . scaffold780 TRF Tandem_Repeat 155913 156110 171 + . . scaffold780 TRF Tandem_Repeat 155918 156110 126 + . . scaffold780 TRF Tandem_Repeat 163937 163963 54 + . . scaffold780 GLEAN mRNA 165196 173820 0.544739 - . ID=CGI_10024720; scaffold780 TRF Tandem_Repeat 166646 166681 72 + . . scaffold780 TRF Tandem_Repeat 168043 168099 55 + . . scaffold780 GLEAN promoter 173821 174820 0.544739 - . ID=CGI_10024720; scaffold780 TRF Tandem_Repeat 173910 173959 100 + . . scaffold780 TRF Tandem_Repeat 192865 192914 100 + . . scaffold780 TRF Tandem_Repeat 193819 193867 71 + . . scaffold780 GLEAN mRNA 194887 195120 1 - . ID=CGI_10024721; scaffold780 GLEAN promoter 195121 196120 1 - . ID=CGI_10024721; scaffold780 GLEAN mRNA 195224 205129 0.99342 - . ID=CGI_10024722; scaffold780 TRF Tandem_Repeat 197511 197693 262 + . . scaffold780 GLEAN promoter 204875 205874 0.523885 + . ID=CGI_10024723; scaffold780 GLEAN promoter 205130 206129 0.99342 - . ID=CGI_10024722; scaffold780 GLEAN mRNA 205875 237446 0.523885 + . ID=CGI_10024723; scaffold780 TRF Tandem_Repeat 208352 208398 94 + . . scaffold780 WUBlastX LINE_L2 216240 216683 34 + . . scaffold780 WUBlastX LINE_L2 216345 217037 250 + . . scaffold780 TRF Tandem_Repeat 223557 223838 444 + . . scaffold780 WUBlastX LINE_RTE-X 229487 229879 33 + . . scaffold780 WUBlastX LINE_RTE-X 229556 229837 41 + . . scaffold780 WUBlastX LINE_RTE-X 229607 229846 50 + . . scaffold780 WUBlastX LINE_RTE-X 229655 229840 74 + . . scaffold780 WUBlastX LINE_RTE-X 232255 232647 33 + . . scaffold780 WUBlastX LINE_RTE-X 232324 232605 41 + . . scaffold780 WUBlastX LINE_RTE-X 232375 232614 50 + . . scaffold780 WUBlastX LINE_RTE-X 232423 232608 74 + . . scaffold780 TRF Tandem_Repeat 232818 232844 54 + . . scaffold780 TRF Tandem_Repeat 234719 234770 104 + . . scaffold780 GLEAN mRNA 241544 248666 0.494913 - . ID=CGI_10024724; scaffold780 GLEAN promoter 248667 249666 0.494913 - . ID=CGI_10024724; scaffold780 TRF Tandem_Repeat 249730 249896 105 + . . scaffold780 TRF Tandem_Repeat 252197 252250 74 + . . scaffold780 WUBlastX LINE_L1-Tx1 252308 252676 71 + . . scaffold780 GLEAN promoter 253528 254527 0.999529 + . ID=CGI_10024725; scaffold780 GLEAN mRNA 254528 257406 0.999529 + . ID=CGI_10024725; scaffold780 GLEAN mRNA 258527 269084 0.724765 - . ID=CGI_10024726; scaffold780 TRF Tandem_Repeat 259141 260463 1525 + . . scaffold780 GLEAN promoter 269085 270084 0.724765 - . ID=CGI_10024726; scaffold780 GLEAN promoter 277527 278526 0.660246 + . ID=CGI_10024727; scaffold780 GLEAN mRNA 278527 298671 0.660246 + . ID=CGI_10024727; scaffold780 TRF Tandem_Repeat 288559 288894 292 + . . scaffold780 GLEAN promoter 302319 303318 0.785646 + . ID=CGI_10024728; scaffold780 GLEAN mRNA 303319 311593 0.785646 + . ID=CGI_10024728; scaffold780 TRF Tandem_Repeat 308815 308879 130 + . . scaffold780 TRF Tandem_Repeat 310660 310711 86 + . . scaffold780 TRF Tandem_Repeat 321346 321394 80 + . . scaffold780 GLEAN promoter 322741 323740 0.999675 + . ID=CGI_10024729; scaffold780 GLEAN mRNA 323741 338393 0.999675 + . ID=CGI_10024729; scaffold780 TRF Tandem_Repeat 328818 328871 108 + . . scaffold780 TRF Tandem_Repeat 328871 328906 72 + . . scaffold780 GLEAN mRNA 340564 367254 0.701893 - . ID=CGI_10024730; scaffold780 TRF Tandem_Repeat 343175 343205 62 + . . scaffold780 GLEAN promoter 367255 368254 0.701893 - . ID=CGI_10024730; scaffold780 GLEAN mRNA 368378 381759 0.651026 - . ID=CGI_10024731; scaffold780 WUBlastX LINE_RTE-BovB 368537 368989 352 + . . scaffold780 GLEAN promoter 381760 382759 0.651026 - . ID=CGI_10024731; scaffold780 TRF Tandem_Repeat 381920 381983 74 + . . scaffold780 TRF Tandem_Repeat 381929 381992 65 + . . scaffold780 GLEAN promoter 383401 384400 0.999999 + . ID=CGI_10024732; scaffold780 TRF Tandem_Repeat 383715 383750 72 + . . scaffold780 GLEAN mRNA 384401 386065 0.999999 + . ID=CGI_10024732; scaffold780 GLEAN mRNA 391849 412813 0.999351 - . ID=CGI_10024733; scaffold780 TRF Tandem_Repeat 402262 402432 274 + . . scaffold780 GLEAN promoter 405836 406835 0.650859 + . ID=CGI_10024734; scaffold780 GLEAN mRNA 406836 418540 0.650859 + . ID=CGI_10024734; scaffold780 TRF Tandem_Repeat 409485 409580 104 + . . scaffold780 TRF Tandem_Repeat 409485 409613 107 + . . scaffold780 GLEAN promoter 412814 413813 0.999351 - . ID=CGI_10024733; scaffold780 GLEAN promoter 419155 420154 0.999675 + . ID=CGI_10024735; scaffold780 GLEAN mRNA 420155 434275 0.999675 + . ID=CGI_10024735; scaffold780 TRF Tandem_Repeat 425704 425764 74 + . . scaffold780 TRF Tandem_Repeat 425704 425765 110 + . . scaffold780 TRF Tandem_Repeat 432439 433640 1800 + . . scaffold780 TRF Tandem_Repeat 434378 434452 123 + . . scaffold780 GLEAN promoter 436873 437872 0.921743 + . ID=CGI_10024736; scaffold780 GLEAN mRNA 437873 449595 0.921743 + . ID=CGI_10024736; scaffold780 WUBlastX DNA_hAT-Hobo 440465 440617 71 - . . scaffold780 TRF Tandem_Repeat 440690 440732 86 + . . scaffold780 TRF Tandem_Repeat 441527 441586 120 + . . scaffold780 GLEAN mRNA 451059 466814 0.999651 - . ID=CGI_10024737; scaffold780 TRF Tandem_Repeat 460027 460089 67 + . . scaffold780 TRF Tandem_Repeat 460027 460089 58 + . . scaffold780 TRF Tandem_Repeat 460578 460607 60 + . . scaffold780 TRF Tandem_Repeat 464414 464460 85 + . . scaffold780 WUBlastX DNA_Maverick 465103 465387 32 - . . scaffold780 GLEAN promoter 466815 467814 0.999651 - . ID=CGI_10024737; scaffold780 TRF Tandem_Repeat 467080 467112 66 + . . scaffold780 WUBlastX LTR_DIRS 467883 468206 145 + . . scaffold780 WUBlastX LTR_DIRS 468284 468337 21 + . . scaffold780 GLEAN promoter 471502 472501 0.544809 + . ID=CGI_10024738; scaffold780 GLEAN mRNA 472502 477985 0.544809 + . ID=CGI_10024738; scaffold780 TRF Tandem_Repeat 472872 472898 54 + . . scaffold780 TRF Tandem_Repeat 478639 478680 66 + . . scaffold780 TRF Tandem_Repeat 488315 488359 90 + . . scaffold780 TRF Tandem_Repeat 503084 503151 127 + . . scaffold780 TRF Tandem_Repeat 505261 505305 90 + . . scaffold780 TRF Tandem_Repeat 510904 510943 80 + . . scaffold780 TRF Tandem_Repeat 512158 512257 137 + . . scaffold780 TRF Tandem_Repeat 515910 515940 62 + . . scaffold780 GLEAN mRNA 515965 516150 1 - . ID=CGI_10024739; scaffold780 GLEAN promoter 516151 517150 1 - . ID=CGI_10024739; scaffold780 TRF Tandem_Repeat 519788 519822 61 + . . scaffold780 TRF Tandem_Repeat 550824 550857 68 + . . scaffold780 TRF Tandem_Repeat 562038 562070 66 + . . scaffold780 TRF Tandem_Repeat 563767 564149 277 + . . scaffold780 TRF Tandem_Repeat 563797 564134 265 + . . scaffold780 TRF Tandem_Repeat 564979 565004 52 + . . scaffold780 TRF Tandem_Repeat 573748 573796 89 + . . scaffold780 GLEAN mRNA 583847 585959 1 - . ID=CGI_10024740; scaffold780 GLEAN promoter 585960 586959 1 - . ID=CGI_10024740; scaffold780 TRF Tandem_Repeat 598026 598086 113 + . . scaffold780 TRF Tandem_Repeat 599364 599416 106 + . . scaffold780 TRF Tandem_Repeat 607617 607670 108 + . . scaffold780 TRF Tandem_Repeat 608204 608257 108 + . . scaffold780 TRF Tandem_Repeat 616504 616529 52 + . . scaffold780 TRF Tandem_Repeat 617884 617921 53 + . . scaffold780 TRF Tandem_Repeat 620199 620250 104 + . . scaffold780 TRF Tandem_Repeat 622010 622058 98 + . . scaffold780 TRF Tandem_Repeat 623370 623413 61 + . . scaffold780 TRF Tandem_Repeat 631612 631652 82 + . . scaffold780 TRF Tandem_Repeat 633275 633312 67 + . . scaffold780 TRF Tandem_Repeat 648549 648606 116 + . . scaffold780 TRF Tandem_Repeat 650168 650206 69 + . . scaffold780 GLEAN promoter 656191 657190 1 + . ID=CGI_10024741; scaffold780 GLEAN mRNA 657191 664648 1 + . ID=CGI_10024741; scaffold780 TRF Tandem_Repeat 662201 662259 63 + . . scaffold780 TRF Tandem_Repeat 662662 662702 57 + . . scaffold780 WUBlastX LINE_RTE-X 667463 667570 56 - . . scaffold780 WUBlastX LINE_CR1-L2 670444 670584 78 - . . scaffold780 WUBlastX LINE_L2 670480 670866 33 - . . scaffold780 WUBlastX LINE_R2-Hero 681061 681237 67 + . . scaffold780 WUBlastX LINE_R2 681133 681492 88 + . . scaffold780 WUBlastX LINE_R2-Hero 681193 681504 208 + . . scaffold780 TRF Tandem_Repeat 681567 681606 80 + . . scaffold780 GLEAN mRNA 693136 699049 1 - . ID=CGI_10024742; scaffold780 TRF Tandem_Repeat 694121 694250 93 + . . scaffold780 TRF Tandem_Repeat 694166 694312 73 + . . scaffold780 TRF Tandem_Repeat 695913 695956 72 + . . scaffold780 GLEAN promoter 697639 698638 0.836758 + . ID=CGI_10024743; scaffold780 GLEAN mRNA 698639 702905 0.836758 + . ID=CGI_10024743; scaffold780 GLEAN promoter 699050 700049 1 - . ID=CGI_10024742; scaffold780 GLEAN mRNA 707085 715636 0.575444 - . ID=CGI_10024744; scaffold780 TRF Tandem_Repeat 708502 708739 442 + . . scaffold780 TRF Tandem_Repeat 708618 708722 52 + . . scaffold780 GLEAN promoter 715637 716636 0.575444 - . ID=CGI_10024744; scaffold780 TRF Tandem_Repeat 725149 725199 102 + . . scaffold780 TRF Tandem_Repeat 732711 732756 92 + . . scaffold780 GLEAN promoter 736047 737046 0.999767 + . ID=CGI_10024745; scaffold780 GLEAN mRNA 737047 749136 0.999767 + . ID=CGI_10024745; scaffold780 TRF Tandem_Repeat 737135 737179 90 + . . scaffold780 TRF Tandem_Repeat 740928 740978 102 + . . scaffold780 GLEAN mRNA 741442 742260 0.555898 - . ID=CGI_10024746; scaffold780 GLEAN promoter 742261 743260 0.555898 - . ID=CGI_10024746; scaffold780 TRF Tandem_Repeat 742655 742755 166 + . . scaffold780 TRF Tandem_Repeat 742803 742838 72 + . . scaffold780 TRF Tandem_Repeat 750216 750259 79 + . . scaffold780 TRF Tandem_Repeat 764725 764890 323 + . . scaffold780 TRF Tandem_Repeat 767184 767258 134 + . . scaffold780 TRF Tandem_Repeat 774543 774613 142 + . . scaffold780 TRF Tandem_Repeat 778269 778333 52 + . . scaffold780 TRF Tandem_Repeat 784049 784085 74 + . . scaffold780 TRF Tandem_Repeat 793436 793640 365 + . . scaffold780 TRF Tandem_Repeat 793443 793640 268 + . . scaffold780 TRF Tandem_Repeat 799967 800009 86 + . . scaffold780 TRF Tandem_Repeat 800738 800782 90 + . . scaffold780 TRF Tandem_Repeat 800820 800884 130 + . . scaffold780 TRF Tandem_Repeat 800974 801014 82 + . . scaffold780 GLEAN mRNA 806712 813159 0.9999 - . ID=CGI_10024747; scaffold780 TRF Tandem_Repeat 811300 811351 104 + . . scaffold780 TRF Tandem_Repeat 811728 811764 74 + . . scaffold780 TRF Tandem_Repeat 811819 811863 83 + . . scaffold780 GLEAN promoter 813160 814159 0.9999 - . ID=CGI_10024747; scaffold780 TRF Tandem_Repeat 818144 818198 110 + . . scaffold780 TRF Tandem_Repeat 818288 818329 75 + . . scaffold780 TRF Tandem_Repeat 820589 820614 52 + . . scaffold780 TRF Tandem_Repeat 821158 821253 93 + . . scaffold780 TRF Tandem_Repeat 821706 821744 78 + . . scaffold780 TRF Tandem_Repeat 822885 822913 58 + . . scaffold780 TRF Tandem_Repeat 836945 837011 125 + . . scaffold780 TRF Tandem_Repeat 837238 837272 70 + . . scaffold780 WUBlastX LINE_L2 842641 842886 89 + . . scaffold780 WUBlastX LINE_CR1-L2 842644 842961 49 + . . scaffold780 WUBlastX LINE_L2 842906 843232 35 + . . scaffold780 GLEAN promoter 847257 848256 0.995556 + . ID=CGI_10024748; scaffold780 GLEAN mRNA 848257 850835 0.995556 + . ID=CGI_10024748; scaffold780 WUBlastX DNA_Crypton 854962 855453 94 + . . scaffold780 TRF Tandem_Repeat 860209 860269 86 + . . scaffold780 TRF Tandem_Repeat 870996 871044 89 + . . scaffold780 TRF Tandem_Repeat 871749 871787 51 + . . scaffold780 TRF Tandem_Repeat 889187 889228 75 + . . scaffold780 TRF Tandem_Repeat 896004 896055 104 + . . scaffold780 TRF Tandem_Repeat 902497 902915 395 + . . scaffold780 TRF Tandem_Repeat 902497 902915 483 + . . scaffold780 TRF Tandem_Repeat 902509 902915 477 + . . scaffold780 TRF Tandem_Repeat 911574 911627 99 + . . scaffold780 TRF Tandem_Repeat 915901 915946 92 + . . scaffold780 TRF Tandem_Repeat 955346 955459 165 + . . scaffold780 GLEAN mRNA 959842 972028 0.999936 - . ID=CGI_10024749; scaffold780 WUBlastX LTR_Ngaro 965113 965403 100 + . . scaffold780 WUBlastX LTR_Ngaro 965152 965664 45 + . . scaffold780 WUBlastX LTR_Ngaro 965759 966301 125 + . . scaffold780 WUBlastX LTR_Ngaro 965804 966241 163 + . . scaffold780 WUBlastX LTR_Ngaro 966317 966928 125 - . . scaffold780 WUBlastX LTR_Ngaro 966864 966968 20 + . . scaffold780 WUBlastX LTR_Ngaro 966954 967268 27 - . . scaffold780 WUBlastX LTR_Ngaro 966972 967148 47 - . . scaffold780 WUBlastX LTR_Ngaro 967270 967527 105 - . . scaffold780 WUBlastX LTR_Ngaro 967427 967678 83 - . . scaffold780 WUBlastX LTR_Ngaro 967704 968060 172 - . . scaffold780 WUBlastX LTR_Ngaro 968065 968241 60 - . . scaffold780 WUBlastX LTR_Ngaro 968068 968217 95 - . . scaffold780 GLEAN promoter 972029 972104 0.999936 - . ID=CGI_10024749; scaffold781 TRF Tandem_Repeat 2870 2959 87 + . . scaffold781 TRF Tandem_Repeat 3069 3101 50 + . . scaffold781 WUBlastX LINE_RTE-X 3578 4171 72 + . . scaffold781 WUBlastX LINE_RTE-X 3755 4201 85 + . . scaffold781 TRF Tandem_Repeat 4361 4405 63 + . . scaffold782 GLEAN promoter 5934 6933 0.996237 + . ID=CGI_10010123; scaffold782 GLEAN mRNA 6934 31766 0.996237 + . ID=CGI_10010123; scaffold782 TRF Tandem_Repeat 17359 17400 66 + . . scaffold782 GLEAN mRNA 35591 47819 0.999938 - . ID=CGI_10010124; scaffold782 GLEAN promoter 44029 45028 1 + . ID=CGI_10010125; scaffold782 GLEAN mRNA 45029 53530 1 + . ID=CGI_10010125; scaffold782 GLEAN promoter 47820 48819 0.999938 - . ID=CGI_10010124; scaffold782 GLEAN promoter 54770 55769 0.999351 + . ID=CGI_10010126; scaffold782 GLEAN mRNA 55770 60769 0.999351 + . ID=CGI_10010126; scaffold782 TRF Tandem_Repeat 65740 66477 977 + . . scaffold782 GLEAN mRNA 69249 81571 0.938415 - . ID=CGI_10010127; scaffold782 TRF Tandem_Repeat 72538 72562 50 + . . scaffold782 TRF Tandem_Repeat 72719 72743 50 + . . scaffold782 GLEAN promoter 75767 76766 0.999995 + . ID=CGI_10010128; scaffold782 GLEAN mRNA 76767 80073 0.999995 + . ID=CGI_10010128; scaffold782 GLEAN promoter 81119 82118 1 + . ID=CGI_10010129; scaffold782 GLEAN promoter 81572 82571 0.938415 - . ID=CGI_10010127; scaffold782 WUBlastX LTR_Gypsy-Cigr 81676 82044 105 - . . scaffold782 GLEAN mRNA 82119 86903 1 + . ID=CGI_10010129; scaffold782 GLEAN promoter 89829 90828 1 + . ID=CGI_10010130; scaffold782 GLEAN mRNA 90829 102668 1 + . ID=CGI_10010130; scaffold782 TRF Tandem_Repeat 95294 95370 138 + . . scaffold782 GLEAN mRNA 106042 112339 1 - . ID=CGI_10010131; scaffold782 TRF Tandem_Repeat 110767 110852 127 + . . scaffold782 GLEAN promoter 112340 113339 1 - . ID=CGI_10010131; scaffold782 GLEAN mRNA 113237 118397 0.794481 - . ID=CGI_10010132; scaffold782 TRF Tandem_Repeat 115863 116482 551 + . . scaffold782 TRF Tandem_Repeat 115863 116482 649 + . . scaffold782 TRF Tandem_Repeat 115863 116482 651 + . . scaffold782 GLEAN promoter 118398 119397 0.794481 - . ID=CGI_10010132; scaffold782 WUBlastX LINE_L1-Tx1 119148 120296 140 + . . scaffold782 GLEAN promoter 121364 122363 0.993014 + . ID=CGI_10010133; scaffold782 GLEAN mRNA 122364 126365 0.993014 + . ID=CGI_10010133; scaffold782 GLEAN promoter 131899 132898 0.883705 + . ID=CGI_10010134; scaffold782 GLEAN mRNA 132899 140189 0.883705 + . ID=CGI_10010134; scaffold782 TRF Tandem_Repeat 138302 138518 101 + . . scaffold782 TRF Tandem_Repeat 138302 138518 186 + . . scaffold782 TRF Tandem_Repeat 138305 138410 79 + . . scaffold782 GLEAN mRNA 154172 167218 0.794739 - . ID=CGI_10010135; scaffold782 TRF Tandem_Repeat 157992 158740 973 + . . scaffold782 GLEAN promoter 164998 165997 1 + . ID=CGI_10010136; scaffold782 GLEAN mRNA 165998 167317 1 + . ID=CGI_10010136; scaffold782 GLEAN promoter 167219 168218 0.794739 - . ID=CGI_10010135; scaffold782 GLEAN promoter 168312 169311 0.99874 + . ID=CGI_10010137; scaffold782 GLEAN mRNA 169312 173173 0.99874 + . ID=CGI_10010137; scaffold782 TRF Tandem_Repeat 169417 169518 105 + . . scaffold782 TRF Tandem_Repeat 169417 169525 92 + . . scaffold782 TRF Tandem_Repeat 170219 170284 132 + . . scaffold782 GLEAN mRNA 175878 189947 1 - . ID=CGI_10010138; scaffold782 TRF Tandem_Repeat 180396 180448 72 + . . scaffold782 GLEAN promoter 189948 190947 1 - . ID=CGI_10010138; scaffold782 GLEAN mRNA 191185 213461 0.610974 - . ID=CGI_10010139; scaffold782 TRF Tandem_Repeat 193177 193384 389 + . . scaffold782 TRF Tandem_Repeat 193253 193481 161 + . . scaffold782 TRF Tandem_Repeat 201125 201697 378 + . . scaffold782 TRF Tandem_Repeat 201280 201357 57 + . . scaffold782 TRF Tandem_Repeat 201594 201661 55 + . . scaffold782 TRF Tandem_Repeat 202550 202893 670 + . . scaffold782 GLEAN promoter 213275 214274 0.19365 + . ID=CGI_10010140; scaffold782 GLEAN promoter 213462 214461 0.610974 - . ID=CGI_10010139; scaffold782 GLEAN mRNA 214275 248332 0.19365 + . ID=CGI_10010140; scaffold782 TRF Tandem_Repeat 222202 222450 272 + . . scaffold782 GLEAN mRNA 237768 240867 0.996819 - . ID=CGI_10010141; scaffold782 GLEAN promoter 240868 241867 0.996819 - . ID=CGI_10010141; scaffold782 TRF Tandem_Repeat 243332 243414 86 + . . scaffold782 TRF Tandem_Repeat 243332 243414 91 + . . scaffold782 TRF Tandem_Repeat 243332 243414 83 + . . scaffold782 TRF Tandem_Repeat 250516 250547 64 + . . scaffold783 GLEAN promoter 1790 2789 0.358594 + . ID=CGI_10011675; scaffold783 GLEAN mRNA 2790 33865 0.358594 + . ID=CGI_10011675; scaffold783 TRF Tandem_Repeat 3328 3510 188 + . . scaffold783 TRF Tandem_Repeat 5875 5969 100 + . . scaffold783 TRF Tandem_Repeat 5876 5974 117 + . . scaffold783 WUBlastX LINE_RTE-X 7169 7468 112 - . . scaffold783 WUBlastX LINE_RTE-X 7193 7525 94 - . . scaffold783 TRF Tandem_Repeat 18811 18925 83 + . . scaffold783 TRF Tandem_Repeat 27276 27355 153 + . . scaffold783 GLEAN promoter 34808 35807 0.838692 + . ID=CGI_10011676; scaffold783 GLEAN mRNA 35808 63575 0.838692 + . ID=CGI_10011676; scaffold783 TRF Tandem_Repeat 38979 39059 117 + . . scaffold783 TRF Tandem_Repeat 45665 45831 257 + . . scaffold783 TRF Tandem_Repeat 66306 66330 50 + . . scaffold783 TRF Tandem_Repeat 68531 68600 131 + . . scaffold783 TRF Tandem_Repeat 76583 76620 76 + . . scaffold783 WUBlastX LINE_RTE-BovB 103046 103438 38 + . . scaffold783 GLEAN promoter 130104 131103 0.99762 + . ID=CGI_10011677; scaffold783 TRF Tandem_Repeat 130632 130848 400 + . . scaffold783 TRF Tandem_Repeat 130819 130967 223 + . . scaffold783 GLEAN mRNA 131104 140635 0.99762 + . ID=CGI_10011677; scaffold783 WUBlastX LINE_RTE-X 135984 136460 73 - . . scaffold783 WUBlastX LINE_RTE-X 136101 136343 74 - . . scaffold783 WUBlastX LINE_RTE-X 136101 136271 89 - . . scaffold783 WUBlastX LINE_RTE-X 141467 142198 112 + . . scaffold783 WUBlastX LINE_RTE-X 141503 142111 186 + . . scaffold783 GLEAN promoter 141824 142823 0.993546 + . ID=CGI_10011678; scaffold783 WUBlastX LINE_RTE-X 142120 142302 46 + . . scaffold783 GLEAN mRNA 142824 149123 0.993546 + . ID=CGI_10011678; scaffold783 TRF Tandem_Repeat 145160 145202 50 + . . scaffold783 TRF Tandem_Repeat 145160 145192 52 + . . scaffold783 TRF Tandem_Repeat 145318 145369 63 + . . scaffold783 TRF Tandem_Repeat 145319 145369 59 + . . scaffold783 TRF Tandem_Repeat 145469 145520 72 + . . scaffold783 TRF Tandem_Repeat 145470 145520 68 + . . scaffold783 GLEAN promoter 165639 166638 0.989349 + . ID=CGI_10011679; scaffold783 GLEAN mRNA 166639 187297 0.989349 + . ID=CGI_10011679; scaffold783 GLEAN promoter 194184 195183 0.524613 + . ID=CGI_10011680; scaffold783 GLEAN mRNA 195184 208552 0.524613 + . ID=CGI_10011680; scaffold783 GLEAN mRNA 210258 213903 0.99879 - . ID=CGI_10011681; scaffold783 GLEAN promoter 213904 214903 0.99879 - . ID=CGI_10011681; scaffold783 GLEAN promoter 218257 219256 0.999719 + . ID=CGI_10011682; scaffold783 TRF Tandem_Repeat 218891 218993 197 + . . scaffold783 GLEAN mRNA 219257 221167 0.999719 + . ID=CGI_10011682; scaffold783 GLEAN promoter 221832 222831 0.999719 + . ID=CGI_10011683; scaffold783 GLEAN mRNA 222832 225119 0.999719 + . ID=CGI_10011683; scaffold783 TRF Tandem_Repeat 224025 224051 54 + . . scaffold783 GLEAN mRNA 226854 232101 0.999787 - . ID=CGI_10011684; scaffold783 TRF Tandem_Repeat 231132 231185 108 + . . scaffold783 GLEAN promoter 232102 233101 0.999787 - . ID=CGI_10011684; scaffold783 TRF Tandem_Repeat 233785 235023 1272 + . . scaffold783 TRF Tandem_Repeat 237560 237606 85 + . . scaffold783 GLEAN mRNA 238955 244983 1 - . ID=CGI_10011685; scaffold783 GLEAN promoter 244984 245983 1 - . ID=CGI_10011685; scaffold783 GLEAN mRNA 247060 255315 0.593383 - . ID=CGI_10011686; scaffold783 GLEAN promoter 255316 256315 0.593383 - . ID=CGI_10011686; scaffold783 TRF Tandem_Repeat 258479 258527 62 + . . scaffold783 WUBlastX LINE_L1 267131 267475 50 + . . scaffold783 WUBlastX LINE_L1-Tx1 267194 267469 168 + . . scaffold783 WUBlastX LINE_L1-Tx1 267200 267583 125 + . . scaffold783 WUBlastX LINE_L1-Tx1 267590 268060 39 + . . scaffold783 WUBlastX LINE_L1-Tx1 267593 267991 167 + . . scaffold783 WUBlastX LINE_L1-Tx1 268110 268517 50 + . . scaffold783 WUBlastX LINE_L1 268206 268403 78 + . . scaffold783 GLEAN promoter 270175 271174 0.999949 + . ID=CGI_10011687; scaffold783 GLEAN mRNA 271175 288350 0.999949 + . ID=CGI_10011687; scaffold783 TRF Tandem_Repeat 271561 271597 58 + . . scaffold783 WUBlastX LTR_Pao 271733 273583 363 - . . scaffold783 WUBlastX LTR_Pao 271733 273238 892 - . . scaffold783 WUBlastX LTR_Pao 273374 273628 84 - . . scaffold783 WUBlastX LTR_Pao 273407 273670 41 - . . scaffold783 WUBlastX LTR_Pao 273706 274350 479 - . . scaffold783 WUBlastX LTR_Pao 274069 274434 27 - . . scaffold783 WUBlastX LTR_Pao 274460 274663 24 - . . scaffold783 WUBlastX LTR_Pao 274749 274979 35 - . . scaffold783 TRF Tandem_Repeat 275745 275782 76 + . . scaffold783 TRF Tandem_Repeat 275953 275990 51 + . . scaffold783 TRF Tandem_Repeat 276011 276046 63 + . . scaffold783 TRF Tandem_Repeat 280054 281102 723 + . . scaffold783 WUBlastX LINE_L1-Tx1 287514 287648 21 + . . scaffold783 TRF Tandem_Repeat 287650 287752 181 + . . scaffold783 WUBlastX LINE_L1-Tx1 288369 288548 67 + . . scaffold783 WUBlastX LINE_L1 288384 288695 29 + . . scaffold783 WUBlastX LINE_L1-Tx1 289537 289620 31 + . . scaffold783 WUBlastX DNA_TcMar-Tc1 293951 294643 62 + . . scaffold783 WUBlastX DNA_TcMar-Tc1 294092 294652 250 + . . scaffold783 WUBlastX DNA_TcMar-Tc1 294643 294897 68 + . . scaffold783 WUBlastX DNA_TcMar-Tc1 294667 294864 96 + . . scaffold784 TRF Tandem_Repeat 3823 3849 54 + . . scaffold784 TRF Tandem_Repeat 3851 3914 128 + . . scaffold784 GLEAN promoter 18047 19046 1 + . ID=CGI_10024408; scaffold784 GLEAN mRNA 19047 24901 1 + . ID=CGI_10024408; scaffold784 GLEAN mRNA 22039 32224 0.537368 - . ID=CGI_10024409; scaffold784 GLEAN promoter 32225 33224 0.537368 - . ID=CGI_10024409; scaffold784 TRF Tandem_Repeat 36972 38233 1712 + . . scaffold784 TRF Tandem_Repeat 46407 46479 128 + . . scaffold784 WUBlastX LINE_RTE-X 49908 50036 21 - . . scaffold784 WUBlastX LINE_L2 50011 50181 26 - . . scaffold784 WUBlastX LINE_RTE-X 50041 50202 120 - . . scaffold784 WUBlastX LINE_RTE-X 50199 50873 109 - . . scaffold784 WUBlastX LINE_RTE-X 50448 50873 193 - . . scaffold784 TRF Tandem_Repeat 51474 51517 72 + . . scaffold784 GLEAN mRNA 52278 59691 0.717636 - . ID=CGI_10024410; scaffold784 TRF Tandem_Repeat 55983 56117 180 + . . scaffold784 TRF Tandem_Repeat 59229 59281 63 + . . scaffold784 GLEAN promoter 59692 60691 0.717636 - . ID=CGI_10024410; scaffold784 GLEAN promoter 64640 65639 0.993982 + . ID=CGI_10024411; scaffold784 WUBlastX LINE_L1 64701 65123 22 + . . scaffold784 GLEAN mRNA 65640 66107 0.993982 + . ID=CGI_10024411; scaffold784 WUBlastX LINE_RTE-X 70473 70670 53 + . . scaffold784 WUBlastX LINE_RTE-X 70476 70706 51 + . . scaffold784 WUBlastX LINE_R2-Hero 82130 82312 76 + . . scaffold784 TRF Tandem_Repeat 84925 84982 71 + . . scaffold784 TRF Tandem_Repeat 84925 84970 65 + . . scaffold784 TRF Tandem_Repeat 84932 84983 50 + . . scaffold784 WUBlastX DNA_IS4EU 85109 86317 303 - . . scaffold784 WUBlastX DNA_IS4EU 85109 85942 348 - . . scaffold784 WUBlastX DNA_P 87072 87284 38 - . . scaffold784 TRF Tandem_Repeat 118476 118525 91 + . . scaffold784 TRF Tandem_Repeat 118476 118526 66 + . . scaffold784 TRF Tandem_Repeat 141846 141885 80 + . . scaffold784 GLEAN promoter 146933 147932 0.816532 + . ID=CGI_10024412; scaffold784 GLEAN mRNA 147933 175683 0.816532 + . ID=CGI_10024412; scaffold784 TRF Tandem_Repeat 170280 170333 108 + . . scaffold784 GLEAN promoter 174876 175875 0.618241 + . ID=CGI_10024414; scaffold784 GLEAN mRNA 175315 177068 0.999676 - . ID=CGI_10024413; scaffold784 GLEAN mRNA 175876 176124 0.618241 + . ID=CGI_10024414; scaffold784 GLEAN promoter 177069 178068 0.999676 - . ID=CGI_10024413; scaffold784 GLEAN mRNA 178600 195281 0.744931 - . ID=CGI_10024415; scaffold784 WUBlastX LINE_L1 185848 186534 65 + . . scaffold784 WUBlastX LINE_L1-Tx1 186019 186837 225 + . . scaffold784 WUBlastX LINE_L1 186619 186900 29 + . . scaffold784 TRF Tandem_Repeat 188260 189110 829 + . . scaffold784 TRF Tandem_Repeat 188269 189006 923 + . . scaffold784 GLEAN promoter 195282 196281 0.744931 - . ID=CGI_10024415; scaffold784 TRF Tandem_Repeat 206510 206610 62 + . . scaffold784 TRF Tandem_Repeat 211001 211098 64 + . . scaffold784 GLEAN promoter 213464 214463 0.996611 + . ID=CGI_10024416; scaffold784 GLEAN mRNA 214464 221576 0.996611 + . ID=CGI_10024416; scaffold784 GLEAN promoter 220818 221817 0.987327 + . ID=CGI_10024417; scaffold784 GLEAN mRNA 221818 237391 0.987327 + . ID=CGI_10024417; scaffold784 GLEAN mRNA 245974 257995 0.999564 - . ID=CGI_10024419; scaffold784 TRF Tandem_Repeat 251646 251673 56 + . . scaffold784 GLEAN promoter 257996 258995 0.999564 - . ID=CGI_10024419; scaffold784 GLEAN mRNA 259081 270089 0.998274 - . ID=CGI_10024420; scaffold784 GLEAN promoter 270090 271089 0.998274 - . ID=CGI_10024420; scaffold784 GLEAN promoter 281071 282070 0.555248 + . ID=CGI_10024421; scaffold784 GLEAN mRNA 282071 283376 0.555248 + . ID=CGI_10024421; scaffold784 TRF Tandem_Repeat 286133 286166 68 + . . scaffold784 TRF Tandem_Repeat 293172 294016 1113 + . . scaffold784 TRF Tandem_Repeat 294023 294066 70 + . . scaffold784 TRF Tandem_Repeat 294027 294065 60 + . . scaffold784 GLEAN mRNA 298825 308897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LINE_RTE-BovB 301210 302145 699 + . . scaffold784 WUBlastX LINE_RTE-BovB 302142 303272 544 + . . scaffold784 WUBlastX LINE_RTE-BovB 303159 303419 287 + . . scaffold784 WUBlastX LINE_RTE-BovB 303364 303600 276 + . . scaffold784 WUBlastX LINE_RTE-BovB 303497 304150 159 + . . scaffold784 WUBlastX LINE_RTE-BovB 303602 303985 493 + . . scaffold784 WUBlastX LINE_RTE-BovB 303934 304200 63 + . . scaffold784 WUBlastX LINE_Proto2 304153 304299 26 + . . scaffold784 WUBlastX LINE_RTE-BovB 304251 304310 23 + . . scaffold784 WUBlastX LTR_Copia 306410 306478 30 - . . scaffold784 WUBlastX LTR_Gypsy 306501 306614 27 - . . scaffold784 TRF Tandem_Repeat 306643 306729 122 + . . scaffold784 WUBlastX LTR_Gypsy 306915 309275 1349 - . . scaffold784 GLEAN promoter 308898 309897 0.999951 - . ID=CGI_10024422; scaffold784 WUBlastX LTR_Gypsy 308910 309353 170 - . . scaffold784 WUBlastX LTR_Gypsy 309302 309385 31 - . . scaffold784 WUBlastX LTR_Gypsy 311096 311659 138 - . . scaffold784 WUBlastX LTR_Gypsy 311677 312117 182 - . . scaffold784 WUBlastX LTR_Gypsy 312129 313064 249 - . . scaffold784 WUBlastX LTR_Gypsy 312198 313244 102 - . . scaffold784 GLEAN promoter 322072 323071 0.970454 + . ID=CGI_10024423; scaffold784 GLEAN mRNA 323072 340691 0.970454 + . ID=CGI_10024423; scaffold784 TRF Tandem_Repeat 326123 326158 72 + . . scaffold784 TRF Tandem_Repeat 328794 328825 55 + . . scaffold784 TRF Tandem_Repeat 333436 333477 84 + . . scaffold784 TRF Tandem_Repeat 336801 336841 55 + . . scaffold784 TRF Tandem_Repeat 344288 344327 80 + . . scaffold784 GLEAN promoter 347106 348105 0.971564 + . ID=CGI_10024424; scaffold784 GLEAN mRNA 348106 351029 0.971564 + . ID=CGI_10024424; scaffold784 TRF Tandem_Repeat 348220 348256 74 + . . scaffold784 TRF Tandem_Repeat 348285 348322 76 + . . scaffold784 TRF Tandem_Repeat 348348 348406 118 + . . scaffold784 TRF Tandem_Repeat 349134 349180 76 + . . scaffold784 TRF Tandem_Repeat 349228 349252 50 + . . scaffold784 GLEAN promoter 352164 353163 1 + . ID=CGI_10024425; scaffold784 TRF Tandem_Repeat 352270 352961 544 + . . scaffold784 TRF Tandem_Repeat 352270 353036 649 + . . scaffold784 TRF Tandem_Repeat 352270 353033 643 + . . scaffold784 TRF Tandem_Repeat 352463 352536 55 + . . scaffold784 TRF Tandem_Repeat 352463 352523 62 + . . scaffold784 TRF Tandem_Repeat 352681 352973 64 + . . scaffold784 TRF Tandem_Repeat 352885 352956 56 + . . scaffold784 GLEAN mRNA 353164 354326 1 + . ID=CGI_10024425; scaffold784 GLEAN mRNA 355321 361418 0.992181 - . ID=CGI_10024426; scaffold784 TRF Tandem_Repeat 357742 357806 130 + . . scaffold784 GLEAN promoter 361419 362418 0.992181 - . ID=CGI_10024426; scaffold784 GLEAN mRNA 363336 369389 0.996041 - . ID=CGI_10024427; scaffold784 TRF Tandem_Repeat 365045 365083 78 + . . scaffold784 TRF Tandem_Repeat 366673 366703 62 + . . scaffold784 GLEAN promoter 368454 369453 0.996819 + . ID=CGI_10024428; scaffold784 TRF Tandem_Repeat 368825 368866 84 + . . scaffold784 GLEAN promoter 369390 370389 0.996041 - . ID=CGI_10024427; scaffold784 GLEAN mRNA 369454 376189 0.996819 + . ID=CGI_10024428; scaffold784 TRF Tandem_Repeat 374293 374338 92 + . . scaffold784 GLEAN promoter 379642 380641 0.999156 + . ID=CGI_10024429; scaffold784 GLEAN mRNA 380642 383576 0.999156 + . ID=CGI_10024429; scaffold784 TRF Tandem_Repeat 400133 400157 50 + . . scaffold784 TRF Tandem_Repeat 403228 403259 64 + . . scaffold784 TRF Tandem_Repeat 406737 406802 132 + . . scaffold784 TRF Tandem_Repeat 406800 406838 78 + . . scaffold784 TRF Tandem_Repeat 426925 427384 325 + . . scaffold784 WUBlastX LINE_L1 433304 433453 50 + . . scaffold784 WUBlastX LINE_L1-Tx1 433304 433588 34 + . . scaffold784 WUBlastX LINE_L2 433919 434329 20 - . . scaffold784 WUBlastX LINE_L2 434000 434179 57 - . . scaffold784 WUBlastX LINE_L2 434000 434230 43 - . . scaffold784 WUBlastX LINE_L2 434132 434512 37 - . . scaffold784 WUBlastX LINE_CR1-L2 434233 434289 40 - . . scaffold784 WUBlastX LINE_RTE-X 434593 434883 49 - . . scaffold784 WUBlastX LINE_L2 434641 434847 103 - . . scaffold784 WUBlastX LINE_Jockey 434695 434877 66 - . . scaffold784 WUBlastX LINE_L2 434835 434978 23 - . . scaffold784 TRF Tandem_Repeat 439972 440065 188 + . . scaffold784 TRF Tandem_Repeat 445932 446522 392 + . . scaffold784 GLEAN promoter 447281 448280 0.401004 + . ID=CGI_10024430; scaffold784 GLEAN mRNA 448281 458100 0.401004 + . ID=CGI_10024430; scaffold784 TRF Tandem_Repeat 452721 452846 227 + . . scaffold784 WUBlastX LINE_RTE-X 453708 453923 58 + . . scaffold784 TRF Tandem_Repeat 485669 485712 70 + . . scaffold784 TRF Tandem_Repeat 488945 488970 52 + . . scaffold784 TRF Tandem_Repeat 496349 496381 57 + . . scaffold784 GLEAN promoter 506174 507173 0.46437 + . ID=CGI_10024431; scaffold784 GLEAN mRNA 507174 515494 0.46437 + . ID=CGI_10024431; scaffold784 TRF Tandem_Repeat 514835 515056 129 + . . scaffold784 TRF Tandem_Repeat 521696 521741 74 + . . scaffold784 TRF Tandem_Repeat 524555 524710 124 + . . scaffold784 TRF Tandem_Repeat 524681 524791 150 + . . scaffold784 TRF Tandem_Repeat 524699 524748 50 + . . scaffold784 GLEAN promoter 527586 528585 0.58638 + . ID=CGI_10024432; scaffold784 GLEAN mRNA 528586 529599 0.58638 + . ID=CGI_10024432; scaffold784 TRF Tandem_Repeat 528873 529130 435 + . . scaffold784 TRF Tandem_Repeat 531863 531902 80 + . . scaffold784 TRF Tandem_Repeat 534516 534570 76 + . . scaffold784 GLEAN promoter 541644 542643 0.630658 + . ID=CGI_10024433; scaffold784 GLEAN mRNA 542644 544887 0.630658 + . ID=CGI_10024433; scaffold784 TRF Tandem_Repeat 543434 543713 186 + . . scaffold784 TRF Tandem_Repeat 543751 544145 329 + . . scaffold784 TRF Tandem_Repeat 561550 561595 56 + . . scaffold784 TRF Tandem_Repeat 563037 563074 76 + . . scaffold784 WUBlastX LTR_Gypsy 565359 566150 428 + . . scaffold784 TRF Tandem_Repeat 574318 574435 69 + . . scaffold784 WUBlastX DNA_Harbinger 575669 576271 73 + . . scaffold784 WUBlastX DNA_Harbinger 575780 576355 194 + . . scaffold784 WUBlastX LINE_CR1 578221 578553 78 - . . scaffold784 WUBlastX LINE_Proto2 578281 579135 132 - . . scaffold784 GLEAN promoter 582699 583698 1 + . ID=CGI_10024434; scaffold784 GLEAN mRNA 583699 589328 1 + . ID=CGI_10024434; scaffold784 WUBlastX LINE_RTE-X 602080 602166 26 + . . scaffold784 WUBlastX LINE_RTE-X 602925 603311 110 + . . scaffold784 TRF Tandem_Repeat 603719 603761 86 + . . scaffold784 GLEAN mRNA 606160 614564 0.466483 - . ID=CGI_10024435; scaffold784 GLEAN promoter 614565 615564 0.466483 - . ID=CGI_10024435; scaffold784 WUBlastX LINE_RTE-X 616445 616567 24 - . . scaffold784 WUBlastX LINE_RTE-X 616877 616939 21 - . . scaffold784 WUBlastX LINE_RTE-X 616938 617144 52 - . . scaffold784 WUBlastX LINE_RTE-X 617134 617274 22 - . . scaffold784 WUBlastX LINE_RTE-X 617137 617241 25 - . . scaffold784 TRF Tandem_Repeat 617314 617369 112 + . . scaffold784 WUBlastX DNA_TcMar-ISRm1 617627 617794 64 + . . scaffold784 GLEAN mRNA 622104 623717 1 - . ID=CGI_10024436; scaffold784 GLEAN promoter 623445 624444 0.999415 + . ID=CGI_10024437; scaffold784 GLEAN promoter 623718 624717 1 - . ID=CGI_10024436; scaffold784 WUBlastX LINE_CR1-L2 624397 624489 45 - . . scaffold784 WUBlastX LINE_L2 624400 624507 32 - . . scaffold784 GLEAN mRNA 624445 639860 0.999415 + . ID=CGI_10024437; scaffold784 WUBlastX LINE_L2 624519 624824 90 - . . scaffold784 TRF Tandem_Repeat 631080 631175 104 + . . scaffold784 TRF Tandem_Repeat 631083 631174 77 + . . scaffold784 TRF Tandem_Repeat 631189 631271 71 + . . scaffold784 TRF Tandem_Repeat 631196 631308 62 + . . scaffold784 TRF Tandem_Repeat 631200 631312 50 + . . scaffold784 TRF Tandem_Repeat 631201 631301 123 + . . scaffold784 TRF Tandem_Repeat 633831 633881 102 + . . scaffold784 GLEAN mRNA 643683 654545 0.998274 - . ID=CGI_10024438; scaffold784 GLEAN promoter 654546 655545 0.998274 - . ID=CGI_10024438; scaffold784 GLEAN promoter 668019 669018 0.999676 + . ID=CGI_10024439; scaffold784 GLEAN mRNA 669019 679113 0.999676 + . ID=CGI_10024439; scaffold784 TRF Tandem_Repeat 672798 672869 121 + . . scaffold784 GLEAN mRNA 679943 681151 0.991119 - . ID=CGI_10024440; scaffold784 GLEAN promoter 681152 682151 0.991119 - . ID=CGI_10024440; scaffold784 TRF Tandem_Repeat 682687 682726 71 + . . scaffold784 TRF Tandem_Repeat 710573 710599 54 + . . scaffold784 TRF Tandem_Repeat 712955 713009 69 + . . scaffold784 TRF Tandem_Repeat 712956 713009 62 + . . scaffold784 WUBlastX LINE_L1-Tx1 718111 718458 33 - . . scaffold784 WUBlastX LINE_L1-Tx1 718180 718455 34 - . . scaffold784 TRF Tandem_Repeat 727737 727764 56 + . . scaffold784 WUBlastX LTR_Pao 728471 728674 54 - . . scaffold784 TRF Tandem_Repeat 731496 731814 102 + . . scaffold784 TRF Tandem_Repeat 731623 731826 137 + . . scaffold784 TRF Tandem_Repeat 732954 733158 136 + . . scaffold784 TRF Tandem_Repeat 741104 741149 58 + . . scaffold784 GLEAN promoter 749877 750876 0.182296 + . ID=CGI_10024441; scaffold784 GLEAN mRNA 750877 774488 0.182296 + . ID=CGI_10024441; scaffold784 TRF Tandem_Repeat 758106 758162 114 + . . scaffold784 TRF Tandem_Repeat 758640 759766 1684 + . . scaffold784 TRF Tandem_Repeat 764105 764145 82 + . . scaffold784 TRF Tandem_Repeat 765515 765873 356 + . . scaffold784 GLEAN mRNA 776583 789713 0.836198 - . ID=CGI_10024442; scaffold784 TRF Tandem_Repeat 777267 777619 431 + . . scaffold784 TRF Tandem_Repeat 782988 784060 1138 + . . scaffold784 TRF Tandem_Repeat 784229 784268 53 + . . scaffold784 GLEAN promoter 789714 790713 0.836198 - . ID=CGI_10024442; scaffold784 TRF Tandem_Repeat 793198 793240 77 + . . scaffold784 TRF Tandem_Repeat 797799 797856 116 + . . scaffold784 TRF Tandem_Repeat 798419 798478 120 + . . scaffold784 TRF Tandem_Repeat 802151 802182 64 + . . scaffold784 WUBlastX LINE_RTE-X 805561 806037 132 - . . scaffold784 WUBlastX LINE_RTE-X 805687 806004 177 - . . scaffold784 GLEAN promoter 814520 815519 0.996841 + . ID=CGI_10024443; scaffold784 GLEAN mRNA 815520 825423 0.996841 + . ID=CGI_10024443; scaffold784 TRF Tandem_Repeat 820177 820226 100 + . . scaffold784 TRF Tandem_Repeat 821275 821309 70 + . . scaffold784 TRF Tandem_Repeat 826038 826093 105 + . . scaffold784 GLEAN mRNA 829266 830102 0.732917 - . ID=CGI_10024444; scaffold784 GLEAN promoter 830103 831102 0.732917 - . ID=CGI_10024444; scaffold784 GLEAN mRNA 843991 844557 0.999727 - . ID=CGI_10024445; scaffold784 GLEAN promoter 844558 845557 0.999727 - . ID=CGI_10024445; scaffold784 GLEAN mRNA 848886 854519 0.990187 - . ID=CGI_10024446; scaffold784 WUBlastX LINE_L2 850158 850667 35 + . . scaffold784 WUBlastX LINE_L2 850308 850655 44 + . . scaffold784 WUBlastX LINE_I 850320 850745 31 + . . scaffold784 WUBlastX LINE_RTE-X 850353 850625 94 + . . scaffold784 TRF Tandem_Repeat 852063 852111 73 + . . scaffold784 TRF Tandem_Repeat 852063 852117 71 + . . scaffold784 GLEAN promoter 854520 855519 0.990187 - . ID=CGI_10024446; scaffold784 GLEAN mRNA 857314 859430 0.653409 - . ID=CGI_10024447; scaffold784 TRF Tandem_Repeat 858232 858263 64 + . . scaffold784 GLEAN promoter 859431 860430 0.653409 - . ID=CGI_10024447; scaffold784 GLEAN promoter 862667 863666 0.734544 + . ID=CGI_10024448; scaffold784 GLEAN mRNA 863667 871299 0.734544 + . ID=CGI_10024448; scaffold784 GLEAN promoter 871526 872525 0.814159 + . ID=CGI_10024449; scaffold784 GLEAN mRNA 872526 883742 0.814159 + . ID=CGI_10024449; scaffold784 TRF Tandem_Repeat 886484 886529 85 + . . scaffold784 TRF Tandem_Repeat 897299 897946 902 + . . scaffold784 TRF Tandem_Repeat 900863 900940 74 + . . scaffold784 GLEAN promoter 902046 903045 0.999676 + . ID=CGI_10024450; scaffold784 GLEAN mRNA 903046 922274 0.999676 + . ID=CGI_10024450; scaffold784 WUBlastX DNA_TcMar-Marin 908032 908340 198 - . . scaffold784 WUBlastX DNA_TcMar-Tc1 908143 908385 75 - . . scaffold784 WUBlastX DNA_TcMar-Marin 908603 909262 241 - . . scaffold784 TRF Tandem_Repeat 912413 913732 1714 + . . scaffold784 GLEAN promoter 923974 924973 0.59338 + . ID=CGI_10024451; scaffold784 GLEAN mRNA 924974 928985 0.59338 + . ID=CGI_10024451; scaffold784 GLEAN promoter 938374 939373 0.999563 + . ID=CGI_10024452; scaffold784 GLEAN mRNA 939374 939619 0.999563 + . ID=CGI_10024452; scaffold784 GLEAN promoter 939994 940993 0.999846 + . ID=CGI_10024453; scaffold784 TRF Tandem_Repeat 940700 940744 90 + . . scaffold784 GLEAN mRNA 940994 944506 0.999846 + . ID=CGI_10024453; scaffold786 GLEAN promoter 1 485 0.561228 + . ID=CGI_10013681; scaffold786 GLEAN mRNA 486 4716 0.561228 + . ID=CGI_10013681; scaffold786 TRF Tandem_Repeat 20584 20990 607 + . . scaffold786 GLEAN mRNA 23590 35073 0.999675 - . ID=CGI_10013691; scaffold786 TRF Tandem_Repeat 24311 24483 319 + . . scaffold786 TRF Tandem_Repeat 24560 24730 146 + . . scaffold786 TRF Tandem_Repeat 27898 28109 424 + . . scaffold786 GLEAN promoter 35074 36073 0.999675 - . ID=CGI_10013691; scaffold786 TRF Tandem_Repeat 36470 36960 831 + . . scaffold786 TRF Tandem_Repeat 38742 38907 140 + . . scaffold786 TRF Tandem_Repeat 38934 39111 158 + . . scaffold786 TRF Tandem_Repeat 39893 40074 107 + . . scaffold786 TRF Tandem_Repeat 40061 40150 59 + . . scaffold786 TRF Tandem_Repeat 41039 41474 647 + . . scaffold786 TRF Tandem_Repeat 44871 45168 551 + . . scaffold786 TRF Tandem_Repeat 46962 47197 386 + . . scaffold786 TRF Tandem_Repeat 49075 49139 121 + . . scaffold786 TRF Tandem_Repeat 50195 50226 55 + . . scaffold786 TRF Tandem_Repeat 50687 50963 308 + . . scaffold786 TRF Tandem_Repeat 52418 52657 399 + . . scaffold786 TRF Tandem_Repeat 53796 54094 404 + . . scaffold786 TRF Tandem_Repeat 54901 55323 717 + . . scaffold786 TRF Tandem_Repeat 56061 56256 347 + . . scaffold786 GLEAN promoter 58481 59480 0.749075 + . ID=CGI_10013692; scaffold786 GLEAN promoter 59319 60318 1 + . ID=CGI_10013693; scaffold786 GLEAN mRNA 59481 59690 0.749075 + . ID=CGI_10013692; scaffold786 GLEAN mRNA 60319 66408 1 + . ID=CGI_10013693; scaffold786 TRF Tandem_Repeat 62873 63345 836 + . . scaffold786 TRF Tandem_Repeat 66560 66659 200 + . . scaffold786 TRF Tandem_Repeat 66578 66647 51 + . . scaffold786 TRF Tandem_Repeat 70406 71051 771 + . . scaffold786 TRF Tandem_Repeat 70406 71051 758 + . . scaffold786 GLEAN mRNA 80224 108816 0.704928 - . ID=CGI_10013694; scaffold786 TRF Tandem_Repeat 80516 80572 105 + . . scaffold786 GLEAN promoter 83922 84921 0.649082 + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 84518 84822 537 + . . scaffold786 GLEAN mRNA 84922 95350 0.649082 + . ID=CGI_10013695; scaffold786 TRF Tandem_Repeat 86878 86999 199 + . . scaffold786 TRF Tandem_Repeat 90287 90507 240 + . . scaffold786 TRF Tandem_Repeat 91226 91276 102 + . . scaffold786 TRF Tandem_Repeat 91274 91316 86 + . . scaffold786 TRF Tandem_Repeat 92802 92828 54 + . . scaffold786 TRF Tandem_Repeat 92922 92988 134 + . . scaffold786 TRF Tandem_Repeat 99635 100745 1460 + . . scaffold786 TRF Tandem_Repeat 102201 103092 464 + . . scaffold786 TRF Tandem_Repeat 102219 103095 733 + . . scaffold786 TRF Tandem_Repeat 102219 103095 708 + . . scaffold786 TRF Tandem_Repeat 103326 103701 736 + . . scaffold786 GLEAN promoter 108564 109563 0.999878 + . ID=CGI_10013696; scaffold786 GLEAN promoter 108817 109816 0.704928 - . ID=CGI_10013694; scaffold786 GLEAN mRNA 109564 127693 0.999878 + . ID=CGI_10013696; scaffold786 TRF Tandem_Repeat 112997 113420 338 + . . scaffold786 TRF Tandem_Repeat 117790 118254 813 + . . scaffold786 GLEAN mRNA 119650 124368 1 - . ID=CGI_10013697; scaffold786 TRF Tandem_Repeat 120091 120466 608 + . . scaffold786 GLEAN promoter 124369 125368 1 - . ID=CGI_10013697; scaffold786 TRF Tandem_Repeat 125381 126320 1235 + . . scaffold786 GLEAN promoter 127083 128082 1 + . ID=CGI_10013698; scaffold786 GLEAN mRNA 128083 129021 1 + . ID=CGI_10013698; scaffold786 GLEAN promoter 129656 130655 0.969127 + . ID=CGI_10013699; scaffold786 TRF Tandem_Repeat 130400 130639 403 + . . scaffold786 GLEAN mRNA 130656 138687 0.969127 + . ID=CGI_10013699; scaffold786 TRF Tandem_Repeat 137879 138209 361 + . . scaffold786 TRF Tandem_Repeat 140234 141012 1308 + . . scaffold786 TRF Tandem_Repeat 144344 149382 7684 + . . scaffold786 TRF Tandem_Repeat 144948 145486 129 + . . scaffold786 TRF Tandem_Repeat 145372 145507 64 + . . scaffold786 TRF Tandem_Repeat 145706 145830 79 + . . scaffold786 TRF Tandem_Repeat 147617 148241 135 + . . scaffold786 TRF Tandem_Repeat 148253 148348 57 + . . scaffold786 TRF Tandem_Repeat 149144 149243 60 + . . scaffold786 TRF Tandem_Repeat 149614 149956 142 + . . scaffold786 TRF Tandem_Repeat 150395 151054 1043 + . . scaffold786 TRF Tandem_Repeat 151931 152053 210 + . . scaffold786 GLEAN promoter 154607 155606 0.383065 + . ID=CGI_10013700; scaffold786 GLEAN mRNA 155607 172877 0.383065 + . ID=CGI_10013700; scaffold786 TRF Tandem_Repeat 157708 157866 248 + . . scaffold786 TRF Tandem_Repeat 158558 158588 55 + . . scaffold786 TRF Tandem_Repeat 159143 159173 53 + . . scaffold786 TRF Tandem_Repeat 159220 159258 78 + . . scaffold786 TRF Tandem_Repeat 164360 164384 50 + . . scaffold786 TRF Tandem_Repeat 164646 164683 76 + . . scaffold786 TRF Tandem_Repeat 166234 166272 69 + . . scaffold786 TRF Tandem_Repeat 172123 172285 290 + . . scaffold786 TRF Tandem_Repeat 175109 175260 181 + . . scaffold786 TRF Tandem_Repeat 178529 178570 84 + . . scaffold786 TRF Tandem_Repeat 188329 188367 78 + . . scaffold786 WUBlastX LINE_CR1-L2 191319 191426 22 - . . scaffold786 WUBlastX LINE_L2 191434 191634 64 - . . scaffold786 WUBlastX LINE_CR1 191684 191770 24 - . . scaffold786 WUBlastX LINE_L2 191739 192314 366 - . . scaffold786 WUBlastX LINE_L2 192237 192338 24 - . . scaffold786 WUBlastX LINE_L2 192356 192886 389 - . . scaffold786 WUBlastX LINE_L2 192865 192990 80 - . . scaffold786 WUBlastX LINE_L2 192883 193134 32 - . . scaffold786 WUBlastX LINE_L2 192901 193071 50 - . . scaffold786 WUBlastX LTR_DIRS 200659 201093 63 - . . scaffold786 WUBlastX LTR_Ngaro 200701 201018 126 - . . scaffold786 WUBlastX LTR_Ngaro 201093 202052 52 - . . scaffold786 WUBlastX LTR_Ngaro 201360 201761 66 - . . scaffold786 WUBlastX DNA_En-Spm 204213 204407 53 - . . scaffold786 WUBlastX DNA_En-Spm 204213 204356 64 - . . scaffold786 WUBlastX DNA_En-Spm 204437 204679 56 - . . scaffold786 WUBlastX LINE_L2 204911 205177 52 + . . scaffold786 WUBlastX LINE_L2 205004 205183 71 + . . scaffold786 TRF Tandem_Repeat 208041 209556 2110 + . . scaffold786 GLEAN promoter 209028 210027 0.618186 + . ID=CGI_10013701; scaffold786 GLEAN mRNA 210028 210210 0.618186 + . ID=CGI_10013701; scaffold786 GLEAN mRNA 217870 219209 0.973013 - . ID=CGI_10013702; scaffold786 GLEAN promoter 219210 220209 0.973013 - . ID=CGI_10013702; scaffold786 TRF Tandem_Repeat 223569 223610 59 + . . scaffold786 WUBlastX LINE_Penelope 224618 224971 24 + . . scaffold786 WUBlastX LINE_Penelope 224696 224971 31 + . . scaffold786 GLEAN mRNA 226467 243822 0.993907 - . ID=CGI_10013703; scaffold786 GLEAN promoter 243823 244822 0.993907 - . ID=CGI_10013703; scaffold786 GLEAN mRNA 244316 265633 0.993907 - . ID=CGI_10013704; scaffold786 TRF Tandem_Repeat 247146 248298 1150 + . . scaffold786 TRF Tandem_Repeat 261775 261851 138 + . . scaffold786 TRF Tandem_Repeat 265053 265097 90 + . . scaffold786 GLEAN promoter 265634 266633 0.993907 - . ID=CGI_10013704; scaffold786 GLEAN promoter 266472 267471 0.985899 + . ID=CGI_10013705; scaffold786 GLEAN mRNA 267472 276923 0.985899 + . ID=CGI_10013705; scaffold786 TRF Tandem_Repeat 269485 269641 157 + . . scaffold786 WUBlastX LINE_RTE-X 272404 272817 77 - . . scaffold786 WUBlastX LINE_RTE-X 272521 272805 100 - . . scaffold786 TRF Tandem_Repeat 274609 274641 57 + . . scaffold786 TRF Tandem_Repeat 276574 276716 214 + . . scaffold786 TRF Tandem_Repeat 276899 277094 276 + . . scaffold786 GLEAN promoter 280923 281922 0.985899 + . ID=CGI_10013706; scaffold786 GLEAN mRNA 281923 291484 0.985899 + . ID=CGI_10013706; scaffold786 WUBlastX DNA_hAT-Tip100 298799 299413 399 + . . scaffold786 WUBlastX DNA_hAT-Tip100 299377 300339 359 + . . scaffold786 GLEAN mRNA 301900 318206 0.997099 - . ID=CGI_10013707; scaffold786 TRF Tandem_Repeat 302205 302231 54 + . . scaffold786 GLEAN promoter 318207 319206 0.997099 - . ID=CGI_10013707; scaffold786 TRF Tandem_Repeat 326835 326889 101 + . . scaffold786 TRF Tandem_Repeat 331400 331451 104 + . . scaffold786 TRF Tandem_Repeat 335701 335826 189 + . . scaffold786 GLEAN promoter 339138 340137 1 + . ID=CGI_10013708; scaffold786 GLEAN mRNA 340138 347810 1 + . ID=CGI_10013708; scaffold786 WUBlastX DNA_IS4EU 344133 344405 105 + . . scaffold786 WUBlastX LINE_L1-Tx1 346234 346623 55 + . . scaffold786 WUBlastX LINE_L1-Tx1 346471 346725 50 + . . scaffold786 WUBlastX LINE_L1-Tx1 346474 346827 28 + . . scaffold786 WUBlastX LINE_L1-Tx1 347157 347351 50 + . . scaffold786 GLEAN mRNA 348664 365361 0.5 - . ID=CGI_10013709; scaffold786 TRF Tandem_Repeat 360890 361037 179 + . . scaffold786 TRF Tandem_Repeat 361187 361274 59 + . . scaffold786 WUBlastX DNA_TcMar-Marin 364475 364915 137 + . . scaffold786 WUBlastX DNA_TcMar-Marin 364848 365168 94 + . . scaffold786 GLEAN promoter 365362 365504 0.5 - . ID=CGI_10013709; scaffold787 GLEAN mRNA 524 5543 1 - . ID=CGI_10011642; scaffold787 GLEAN promoter 5544 6543 1 - . ID=CGI_10011642; scaffold787 TRF Tandem_Repeat 10170 10331 204 + . . scaffold787 GLEAN promoter 10203 11202 0.693346 + . ID=CGI_10011643; scaffold787 TRF Tandem_Repeat 10475 10633 112 + . . scaffold787 GLEAN mRNA 11203 15323 0.693346 + . ID=CGI_10011643; scaffold787 GLEAN mRNA 17712 24727 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 18661 18757 131 + . . scaffold787 TRF Tandem_Repeat 18693 18768 84 + . . scaffold787 TRF Tandem_Repeat 19225 19489 437 + . . scaffold787 TRF Tandem_Repeat 19941 20201 369 + . . scaffold787 TRF Tandem_Repeat 19961 20356 390 + . . scaffold787 TRF Tandem_Repeat 20694 20779 59 + . . scaffold787 TRF Tandem_Repeat 23872 24029 104 + . . scaffold787 TRF Tandem_Repeat 23915 24073 137 + . . scaffold787 TRF Tandem_Repeat 23942 24029 57 + . . scaffold787 TRF Tandem_Repeat 23989 24055 64 + . . scaffold787 GLEAN promoter 24728 25727 0.999948 - . ID=CGI_10011644; scaffold787 TRF Tandem_Repeat 29965 30006 77 + . . scaffold787 TRF Tandem_Repeat 30354 30392 78 + . . scaffold787 TRF Tandem_Repeat 31259 31302 79 + . . scaffold787 WUBlastX LINE_L2 32559 32897 42 + . . scaffold787 TRF Tandem_Repeat 33087 33136 100 + . . scaffold787 TRF Tandem_Repeat 33742 33796 110 + . . scaffold787 GLEAN promoter 43284 44283 0.227705 + . ID=CGI_10011645; scaffold787 GLEAN mRNA 44284 65089 0.227705 + . ID=CGI_10011645; scaffold787 TRF Tandem_Repeat 65782 67080 696 + . . scaffold787 TRF Tandem_Repeat 65782 66677 862 + . . scaffold787 TRF Tandem_Repeat 65782 67080 871 + . . scaffold787 WUBlastX DNA_PiggyBac 82064 82384 36 + . . scaffold787 WUBlastX DNA_PiggyBac 82181 82369 36 + . . scaffold787 WUBlastX DNA_PiggyBac 82363 82449 34 + . . scaffold787 WUBlastX DNA_PiggyBac 82900 83025 56 + . . scaffold787 WUBlastX DNA_PiggyBac 83433 83609 64 + . . scaffold787 WUBlastX DNA_PiggyBac 83433 83681 22 + . . scaffold787 WUBlastX DNA_PiggyBac 83433 83642 27 + . . scaffold787 WUBlastX DNA_PiggyBac 85505 85624 39 + . . scaffold787 GLEAN mRNA 127421 141413 0.552181 - . ID=CGI_10011646; scaffold787 GLEAN promoter 141414 142413 0.552181 - . ID=CGI_10011646; scaffold787 GLEAN promoter 159320 160319 0.250339 + . ID=CGI_10011647; scaffold787 GLEAN mRNA 160320 167818 0.250339 + . ID=CGI_10011647; scaffold787 TRF Tandem_Repeat 161004 161040 56 + . . scaffold787 TRF Tandem_Repeat 168697 168806 116 + . . scaffold787 TRF Tandem_Repeat 173672 173763 96 + . . scaffold787 TRF Tandem_Repeat 173801 173913 120 + . . scaffold787 TRF Tandem_Repeat 174001 174103 111 + . . scaffold787 TRF Tandem_Repeat 174294 174434 101 + . . scaffold787 TRF Tandem_Repeat 174324 174453 104 + . . scaffold787 TRF Tandem_Repeat 175260 175295 72 + . . scaffold787 GLEAN promoter 182407 183406 0.666952 + . ID=CGI_10011648; scaffold787 GLEAN mRNA 183407 204233 0.666952 + . ID=CGI_10011648; scaffold787 TRF Tandem_Repeat 191677 192839 1717 + . . scaffold787 WUBlastX LINE_RTE-X 209400 209594 76 - . . scaffold787 WUBlastX LINE_RTE-X 209596 210324 56 - . . scaffold787 WUBlastX LINE_RTE-X 209707 210168 94 - . . scaffold787 WUBlastX LINE_RTE-X 209950 210402 113 - . . scaffold787 GLEAN promoter 210780 211779 0.42091 + . ID=CGI_10011649; scaffold787 TRF Tandem_Repeat 210823 210864 77 + . . scaffold787 GLEAN mRNA 211780 224295 0.42091 + . ID=CGI_10011649; scaffold787 GLEAN mRNA 219328 253031 0.970021 - . ID=CGI_10011650; scaffold787 TRF Tandem_Repeat 230259 230383 90 + . . scaffold787 WUBlastX DNA_hAT-Blackja 233852 235051 351 - . . scaffold787 WUBlastX DNA_hAT-Blackja 233858 234856 365 - . . scaffold787 WUBlastX LINE_RTE-X 242077 242286 66 + . . scaffold787 GLEAN promoter 250947 251946 0.515908 + . ID=CGI_10011651; scaffold787 GLEAN mRNA 251947 273262 0.515908 + . ID=CGI_10011651; scaffold787 GLEAN promoter 253032 254031 0.970021 - . ID=CGI_10011650; scaffold787 TRF Tandem_Repeat 260763 260787 50 + . . scaffold787 TRF Tandem_Repeat 261763 261796 68 + . . scaffold787 TRF Tandem_Repeat 264667 264714 96 + . . scaffold787 TRF Tandem_Repeat 264714 264755 84 + . . scaffold787 TRF Tandem_Repeat 272200 272313 102 + . . scaffold787 WUBlastX DNA_TcMar-Marin 273987 274319 75 + . . scaffold787 WUBlastX DNA_TcMar-Marin 274044 274316 111 + . . scaffold787 WUBlastX DNA_TcMar-Marin 274618 274764 26 + . . scaffold787 GLEAN mRNA 277533 291587 1 - . ID=CGI_10011652; scaffold787 TRF Tandem_Repeat 288573 289724 1179 + . . scaffold787 GLEAN promoter 291588 292587 1 - . ID=CGI_10011652; scaffold788 GLEAN promoter 11221 12220 0.999676 + . ID=CGI_10006828; scaffold788 GLEAN mRNA 12221 23562 0.999676 + . ID=CGI_10006828; scaffold788 TRF Tandem_Repeat 26572 26626 101 + . . scaffold788 TRF Tandem_Repeat 31286 31350 112 + . . scaffold788 WUBlastX LINE_L1-Tx1 33028 34536 301 - . . scaffold788 WUBlastX LINE_L1-Tx1 34320 35183 518 - . . scaffold788 WUBlastX LINE_L1 34551 35963 181 - . . scaffold788 WUBlastX LINE_L1 34563 36326 136 - . . scaffold788 WUBlastX LINE_L1-Tx1 36156 36422 37 - . . scaffold788 WUBlastX LINE_L1 36207 36350 46 - . . scaffold788 WUBlastX LINE_L1 36398 36604 44 - . . scaffold788 WUBlastX LINE_L1-Tx1 36434 36595 48 - . . scaffold788 TRF Tandem_Repeat 47797 47843 94 + . . scaffold788 TRF Tandem_Repeat 52024 52081 116 + . . scaffold788 TRF Tandem_Repeat 52238 52282 81 + . . scaffold788 TRF Tandem_Repeat 52590 52616 54 + . . scaffold788 TRF Tandem_Repeat 56911 56979 111 + . . scaffold788 TRF Tandem_Repeat 65076 65122 58 + . . scaffold788 TRF Tandem_Repeat 66143 67003 1000 + . . scaffold788 TRF Tandem_Repeat 66143 66866 1035 + . . scaffold788 TRF Tandem_Repeat 73423 73694 281 + . . scaffold788 WUBlastX DNA_IS4EU 123808 123897 31 + . . scaffold788 WUBlastX DNA_IS4EU 124562 124903 76 + . . scaffold788 WUBlastX DNA_IS4EU 124855 125223 93 + . . scaffold788 WUBlastX DNA_IS4EU 124942 125250 161 + . . scaffold788 WUBlastX DNA_Kolobok-IS4 125250 125447 114 + . . scaffold788 WUBlastX DNA_Kolobok-IS4 125250 125483 109 + . . scaffold788 TRF Tandem_Repeat 127361 127466 64 + . . scaffold788 GLEAN mRNA 130618 136390 0.35609 - . ID=CGI_10006829; scaffold788 GLEAN promoter 136391 137390 0.35609 - . ID=CGI_10006829; scaffold788 GLEAN mRNA 136742 141250 0.702385 - . ID=CGI_10006830; scaffold788 GLEAN promoter 141251 142250 0.702385 - . ID=CGI_10006830; scaffold789 GLEAN mRNA 198 46435 0.725152 - . ID=CGI_10017177; scaffold789 TRF Tandem_Repeat 11973 11998 52 + . . scaffold789 TRF Tandem_Repeat 36571 36608 58 + . . scaffold789 GLEAN promoter 46436 47435 0.725152 - . ID=CGI_10017177; scaffold789 GLEAN promoter 53538 54537 0.937847 + . ID=CGI_10017178; scaffold789 GLEAN mRNA 54538 60064 0.937847 + . ID=CGI_10017178; scaffold789 GLEAN mRNA 63053 69158 0.999376 - . ID=CGI_10017179; scaffold789 GLEAN promoter 69159 70158 0.999376 - . ID=CGI_10017179; scaffold789 GLEAN promoter 69758 70757 0.499999 + . ID=CGI_10017180; scaffold789 GLEAN mRNA 70758 72925 0.499999 + . ID=CGI_10017180; scaffold789 WUBlastX DNA_hAT 70758 70889 27 + . . scaffold789 WUBlastX DNA_hAT 71273 72898 404 + . . scaffold789 GLEAN mRNA 76148 97050 0.642884 - . ID=CGI_10017181; scaffold789 GLEAN promoter 77587 78586 0.999998 + . ID=CGI_10017182; scaffold789 GLEAN mRNA 78587 82454 0.999998 + . ID=CGI_10017182; scaffold789 GLEAN promoter 88836 89835 0.999984 + . ID=CGI_10017183; scaffold789 GLEAN mRNA 89836 91458 0.999984 + . ID=CGI_10017183; scaffold789 WUBlastX LINE_R2-Hero 95750 96331 139 + . . scaffold789 WUBlastX LINE_R2-Hero 96646 96738 24 + . . scaffold789 GLEAN promoter 97051 98050 0.642884 - . ID=CGI_10017181; scaffold789 GLEAN mRNA 99047 107138 1 - . ID=CGI_10017184; scaffold789 TRF Tandem_Repeat 106965 107018 101 + . . scaffold789 GLEAN promoter 107139 108138 1 - . ID=CGI_10017184; scaffold789 TRF Tandem_Repeat 109022 109060 78 + . . scaffold789 GLEAN mRNA 124864 131605 0.999626 - . ID=CGI_10017185; scaffold789 GLEAN promoter 131606 132605 0.999626 - . ID=CGI_10017185; scaffold789 GLEAN promoter 133415 134414 0.73295 + . ID=CGI_10017186; scaffold789 TRF Tandem_Repeat 133622 133751 161 + . . scaffold789 TRF Tandem_Repeat 133622 133893 280 + . . scaffold789 TRF Tandem_Repeat 133769 133891 147 + . . scaffold789 GLEAN mRNA 134415 152332 0.73295 + . ID=CGI_10017186; scaffold789 GLEAN mRNA 144346 157165 0.544692 - . ID=CGI_10017187; scaffold789 GLEAN promoter 157166 158165 0.544692 - . ID=CGI_10017187; scaffold789 GLEAN mRNA 159071 165070 0.537172 - . ID=CGI_10017188; scaffold789 GLEAN promoter 165071 166070 0.537172 - . ID=CGI_10017188; scaffold789 GLEAN promoter 165397 166396 0.999999 + . ID=CGI_10017189; scaffold789 GLEAN mRNA 166397 170183 0.999999 + . ID=CGI_10017189; scaffold789 GLEAN mRNA 171355 182522 1 - . ID=CGI_10017190; scaffold789 GLEAN promoter 182523 183522 1 - . ID=CGI_10017190; scaffold789 TRF Tandem_Repeat 184007 184048 84 + . . scaffold789 GLEAN promoter 184259 185258 1 + . ID=CGI_10017191; scaffold789 TRF Tandem_Repeat 184951 185001 102 + . . scaffold789 GLEAN mRNA 185259 185966 1 + . ID=CGI_10017191; scaffold789 GLEAN mRNA 188981 189688 0.836235 - . ID=CGI_10017192; scaffold789 GLEAN promoter 189689 190688 0.836235 - . ID=CGI_10017192; scaffold789 TRF Tandem_Repeat 190129 190245 234 + . . scaffold789 GLEAN mRNA 196160 196867 0.777732 - . ID=CGI_10017193; scaffold789 GLEAN promoter 196868 197867 0.777732 - . ID=CGI_10017193; scaffold789 GLEAN mRNA 199629 206796 1 - . ID=CGI_10017194; scaffold789 GLEAN promoter 205678 206677 0.999995 + . ID=CGI_10017195; scaffold789 GLEAN mRNA 206678 213174 0.999995 + . ID=CGI_10017195; scaffold789 GLEAN promoter 206797 207796 1 - . ID=CGI_10017194; scaffold789 GLEAN mRNA 215680 227258 0.651068 - . ID=CGI_10017196; scaffold789 GLEAN promoter 227259 228258 0.651068 - . ID=CGI_10017196; scaffold789 GLEAN promoter 229570 230569 0.999941 + . ID=CGI_10017197; scaffold789 GLEAN mRNA 230570 234228 0.999941 + . ID=CGI_10017197; scaffold789 GLEAN promoter 234079 235078 0.999999 + . ID=CGI_10017198; scaffold789 GLEAN mRNA 235079 241711 0.999999 + . ID=CGI_10017198; scaffold789 GLEAN mRNA 244542 264566 1 - . ID=CGI_10017199; scaffold789 TRF Tandem_Repeat 247982 248037 103 + . . scaffold789 TRF Tandem_Repeat 249826 249868 50 + . . scaffold789 GLEAN promoter 264567 265566 1 - . ID=CGI_10017199; scaffold789 TRF Tandem_Repeat 267189 267246 116 + . . scaffold789 GLEAN promoter 274610 275609 0.999942 + . ID=CGI_10017200; scaffold789 GLEAN mRNA 275610 293507 0.999942 + . ID=CGI_10017200; scaffold789 TRF Tandem_Repeat 286777 287106 294 + . . scaffold789 TRF Tandem_Repeat 286789 287106 413 + . . scaffold789 TRF Tandem_Repeat 286959 287106 170 + . . scaffold789 TRF Tandem_Repeat 288363 288575 275 + . . scaffold789 TRF Tandem_Repeat 298863 299039 52 + . . scaffold789 TRF Tandem_Repeat 300011 300755 982 + . . scaffold789 TRF Tandem_Repeat 300017 300847 899 + . . scaffold789 WUBlastX LTR_Gypsy 307078 307146 26 + . . scaffold789 WUBlastX LTR_Gypsy 307090 307167 43 + . . scaffold789 WUBlastX LTR_Gypsy 307166 307903 152 + . . scaffold789 WUBlastX LTR_Gypsy 307917 308312 82 + . . scaffold789 WUBlastX LTR_Gypsy 308228 308740 119 + . . scaffold789 WUBlastX LTR_Gypsy 308321 308740 213 + . . scaffold789 WUBlastX LTR_Gypsy 309674 309886 22 + . . scaffold789 WUBlastX LTR_Gypsy 309933 310298 38 + . . scaffold789 WUBlastX LTR_Gypsy 310089 310295 44 + . . scaffold789 WUBlastX LTR_Gypsy 311235 311597 90 + . . scaffold789 WUBlastX LTR_Gypsy-Gmr1 311304 311597 94 + . . scaffold789 WUBlastX LTR_Gypsy 316481 316651 26 + . . scaffold789 WUBlastX LTR_Gypsy 316535 316699 21 + . . scaffold789 WUBlastX LTR_Gypsy 316698 317027 37 + . . scaffold789 WUBlastX LTR_Gypsy 317475 317882 45 + . . scaffold789 WUBlastX LTR_Gypsy 317574 317882 72 + . . scaffold789 WUBlastX LTR_Gypsy 317760 317906 55 + . . scaffold789 WUBlastX LTR_Gypsy 317902 318036 26 + . . scaffold789 WUBlastX LTR_Gypsy-Gmr1 318029 318253 39 + . . scaffold789 WUBlastX LTR_Gypsy 318083 318616 91 + . . scaffold789 WUBlastX LTR_Gypsy 318194 318631 146 + . . scaffold789 WUBlastX LTR_Gypsy 318254 318622 153 + . . scaffold789 WUBlastX LTR_Gypsy 318628 318747 40 + . . scaffold789 WUBlastX LTR_Gypsy 318780 319061 57 + . . scaffold789 WUBlastX LTR_Gypsy 319070 319291 60 + . . scaffold789 WUBlastX LTR_Gypsy 319085 319258 89 + . . scaffold789 GLEAN promoter 320917 321916 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 321709 321798 21 + . . scaffold789 GLEAN mRNA 321917 326732 0.597754 + . ID=CGI_10017201; scaffold789 WUBlastX LTR_Gypsy 322330 322752 46 + . . scaffold789 WUBlastX LTR_Gypsy 322510 322749 46 + . . scaffold789 WUBlastX LTR_Gypsy 323482 323829 126 + . . scaffold789 WUBlastX LTR_Gypsy 323617 323877 155 + . . scaffold789 WUBlastX LTR_Gypsy 323620 323952 83 + . . scaffold789 WUBlastX LTR_Gypsy 323626 324021 68 + . . scaffold789 TRF Tandem_Repeat 327085 327116 64 + . . scaffold789 GLEAN promoter 327495 328494 0.972223 + . ID=CGI_10017202; scaffold789 GLEAN mRNA 328495 344688 0.972223 + . ID=CGI_10017202; scaffold789 TRF Tandem_Repeat 336707 336749 86 + . . scaffold789 GLEAN promoter 346174 347173 0.984926 + . ID=CGI_10017203; scaffold789 GLEAN mRNA 347174 347654 0.984926 + . ID=CGI_10017203; scaffold789 WUBlastX DNA_TcMar-ISRm1 348390 348938 113 - . . scaffold789 WUBlastX DNA_TcMar-ISRm1 348501 349307 131 - . . scaffold789 TRF Tandem_Repeat 356497 356635 196 + . . scaffold789 GLEAN mRNA 361498 361743 0.733495 - . ID=CGI_10017204; scaffold789 GLEAN promoter 361744 362743 0.733495 - . ID=CGI_10017204; scaffold789 TRF Tandem_Repeat 362704 362972 301 + . . scaffold789 TRF Tandem_Repeat 363449 363506 98 + . . scaffold789 TRF Tandem_Repeat 363989 364104 137 + . . scaffold789 TRF Tandem_Repeat 364047 364091 62 + . . scaffold789 WUBlastX LINE_Jockey 365826 365942 26 + . . scaffold789 WUBlastX LINE_L1-Tx1 366123 366647 25 + . . scaffold789 WUBlastX LINE_L1-Tx1 366375 366644 36 + . . scaffold789 WUBlastX LINE_L1-Tx1 366435 366671 79 + . . scaffold789 WUBlastX LINE_L1 366474 366647 85 + . . scaffold789 WUBlastX LINE_L1 366507 366647 98 + . . scaffold789 WUBlastX LINE_L1-Tx1 366538 367266 264 + . . scaffold789 WUBlastX LINE_Rex-Babar 366862 367338 52 + . . scaffold789 WUBlastX DNA_NOF? 369405 369626 29 + . . scaffold789 WUBlastX DNA_NOF? 369751 369885 21 + . . scaffold789 WUBlastX DNA_MuDR 372618 372863 66 - . . scaffold789 WUBlastX DNA_MuDR 372947 373123 30 - . . scaffold789 TRF Tandem_Repeat 375369 375632 309 + . . scaffold789 TRF Tandem_Repeat 377485 377517 66 + . . scaffold789 TRF Tandem_Repeat 379331 379422 112 + . . scaffold789 WUBlastX DNA_hAT-hATw 382427 382597 49 - . . scaffold789 WUBlastX LINE_RTE-X 386771 386929 87 + . . scaffold789 WUBlastX LINE_RTE-X 386771 386962 70 + . . scaffold789 WUBlastX LINE_RTE-X 386774 387067 36 + . . scaffold789 WUBlastX DNA_Sola 437060 437509 45 + . . scaffold789 WUBlastX DNA_Sola 437132 438127 89 + . . scaffold789 WUBlastX DNA_Sola 437348 438127 106 + . . scaffold789 WUBlastX DNA_Sola 438449 438688 34 + . . scaffold789 TRF Tandem_Repeat 440585 440650 132 + . . scaffold789 GLEAN promoter 448746 449745 1 + . ID=CGI_10017205; scaffold789 GLEAN mRNA 449746 456527 1 + . ID=CGI_10017205; scaffold789 WUBlastX LINE_CR1 451402 452883 625 + . . scaffold789 WUBlastX LINE_CR1 451687 452877 645 + . . scaffold789 WUBlastX LINE_CR1 452887 453750 576 + . . scaffold789 WUBlastX LINE_L1 453845 453892 21 + . . scaffold789 GLEAN mRNA 458555 462272 0.999999 - . ID=CGI_10017206; scaffold789 GLEAN promoter 461989 462988 1 + . ID=CGI_10017207; scaffold789 GLEAN promoter 462273 463272 0.999999 - . ID=CGI_10017206; scaffold789 GLEAN mRNA 462989 465977 1 + . ID=CGI_10017207; scaffold789 GLEAN mRNA 467292 468343 1 - . ID=CGI_10017208; scaffold789 TRF Tandem_Repeat 467618 467645 56 + . . scaffold789 TRF Tandem_Repeat 467660 467712 79 + . . scaffold789 GLEAN promoter 468344 469343 1 - . ID=CGI_10017208; scaffold789 GLEAN promoter 469151 470150 0.99117 + . ID=CGI_10017209; scaffold789 GLEAN mRNA 470151 471571 0.99117 + . ID=CGI_10017209; scaffold789 GLEAN mRNA 471790 477511 0.996431 - . ID=CGI_10017210; scaffold789 TRF Tandem_Repeat 475312 475347 72 + . . scaffold789 GLEAN promoter 477512 478511 0.996431 - . ID=CGI_10017210; scaffold789 GLEAN mRNA 477724 477918 0.746402 - . ID=CGI_10017211; scaffold789 GLEAN promoter 477919 478918 0.746402 - . ID=CGI_10017211; scaffold789 GLEAN promoter 484164 485163 0.777577 + . ID=CGI_10017212; scaffold789 GLEAN mRNA 485164 486210 0.777577 + . ID=CGI_10017212; scaffold789 GLEAN mRNA 488414 495262 0.777732 - . ID=CGI_10017213; scaffold789 GLEAN promoter 495263 495744 0.777732 - . ID=CGI_10017213; scaffold79 TRF Tandem_Repeat 33389 33449 50 + . . scaffold79 TRF Tandem_Repeat 38953 38986 68 + . . scaffold79 TRF Tandem_Repeat 38984 39027 88 + . . scaffold79 WUBlastX LTR_Ngaro 42791 43009 43 - . . scaffold79 WUBlastX LTR_Ngaro 43083 43241 46 - . . scaffold79 TRF Tandem_Repeat 57424 57449 52 + . . scaffold79 TRF Tandem_Repeat 58046 58090 81 + . . scaffold79 TRF Tandem_Repeat 59014 59052 78 + . . scaffold79 TRF Tandem_Repeat 61901 61969 120 + . . scaffold79 TRF Tandem_Repeat 87538 87581 70 + . . scaffold79 TRF Tandem_Repeat 121632 121669 76 + . . scaffold79 TRF Tandem_Repeat 126808 126935 229 + . . scaffold79 TRF Tandem_Repeat 130693 130745 70 + . . scaffold79 TRF Tandem_Repeat 133897 134340 681 + . . scaffold79 TRF Tandem_Repeat 134645 134749 63 + . . scaffold79 TRF Tandem_Repeat 134646 134695 55 + . . scaffold79 TRF Tandem_Repeat 135080 135123 70 + . . scaffold79 TRF Tandem_Repeat 146504 146529 52 + . . scaffold79 GLEAN promoter 147278 148277 0.597031 + . ID=CGI_10024614; scaffold79 GLEAN mRNA 148278 154841 0.597031 + . ID=CGI_10024614; scaffold79 GLEAN mRNA 155943 157253 0.801649 - . ID=CGI_10024615; scaffold79 GLEAN promoter 157254 158253 0.801649 - . ID=CGI_10024615; scaffold79 WUBlastX LINE_L2 159457 159756 48 - . . scaffold79 WUBlastX LINE_CR1 159595 159900 46 - . . scaffold79 WUBlastX LINE_CR1-L2 159598 159810 74 - . . scaffold79 WUBlastX LINE_CR1 172431 173006 91 + . . scaffold79 WUBlastX LINE_CR1 172545 173048 145 + . . scaffold79 WUBlastX LINE_CR1 173011 173163 109 + . . scaffold79 WUBlastX LINE_CR1 173011 173205 25 + . . scaffold79 GLEAN promoter 175973 176972 0.994376 + . ID=CGI_10024616; scaffold79 GLEAN mRNA 176973 199375 0.994376 + . ID=CGI_10024616; scaffold79 TRF Tandem_Repeat 180750 180972 383 + . . scaffold79 TRF Tandem_Repeat 189605 189827 188 + . . scaffold79 TRF Tandem_Repeat 189606 189744 95 + . . scaffold79 TRF Tandem_Repeat 189612 189743 112 + . . scaffold79 TRF Tandem_Repeat 192152 192201 91 + . . scaffold79 GLEAN mRNA 201367 207011 1 - . ID=CGI_10024617; scaffold79 GLEAN promoter 204076 205075 0.544852 + . ID=CGI_10024618; scaffold79 GLEAN mRNA 205076 218943 0.544852 + . ID=CGI_10024618; scaffold79 GLEAN promoter 207012 208011 1 - . ID=CGI_10024617; scaffold79 TRF Tandem_Repeat 209534 209615 52 + . . scaffold79 TRF Tandem_Repeat 209535 209623 72 + . . scaffold79 WUBlastX LINE_RTE-X 212710 212859 26 - . . scaffold79 WUBlastX RC_Helitron 221755 222372 126 + . . scaffold79 TRF Tandem_Repeat 224714 224758 58 + . . scaffold79 TRF Tandem_Repeat 224714 224743 51 + . . scaffold79 TRF Tandem_Repeat 230577 230611 70 + . . scaffold79 TRF Tandem_Repeat 234702 235657 1354 + . . scaffold79 GLEAN promoter 234902 235901 0.441494 + . ID=CGI_10024619; scaffold79 GLEAN mRNA 235902 243546 0.441494 + . ID=CGI_10024619; scaffold79 TRF Tandem_Repeat 246416 249020 3847 + . . scaffold79 WUBlastX DNA_TcMar-Fot1 253394 254314 178 - . . scaffold79 WUBlastX DNA_TcMar-Fot1 253664 254272 197 - . . scaffold79 WUBlastX LINE_L2 255631 255876 51 - . . scaffold79 GLEAN promoter 256196 257195 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257005 257139 21 + . . scaffold79 GLEAN mRNA 257196 271359 0.644901 + . ID=CGI_10024620; scaffold79 WUBlastX DNA_Harbinger 257413 257628 20 + . . scaffold79 WUBlastX DNA_Harbinger 257455 257634 84 + . . scaffold79 WUBlastX DNA_Harbinger 257530 257667 33 + . . scaffold79 WUBlastX DNA_Harbinger 257691 258185 179 + . . scaffold79 TRF Tandem_Repeat 259924 259949 52 + . . scaffold79 WUBlastX DNA_TcMar-Tc1 261216 261521 66 - . . scaffold79 WUBlastX DNA_TcMar-Tc1 261611 261952 67 - . . scaffold79 WUBlastX DNA_TcMar-Tc1 261611 262045 47 - . . scaffold79 TRF Tandem_Repeat 262141 262328 190 + . . scaffold79 TRF Tandem_Repeat 263163 263274 145 + . . scaffold79 TRF Tandem_Repeat 263163 263486 259 + . . scaffold79 TRF Tandem_Repeat 263313 263423 127 + . . scaffold79 WUBlastX LINE_RTE-X 265873 266067 41 + . . scaffold79 WUBlastX LINE_RTE-X 266070 266399 47 + . . scaffold79 WUBlastX LINE_RTE-X 266082 266357 66 + . . scaffold79 WUBlastX LINE_RTE-X 266088 266270 93 + . . scaffold79 TRF Tandem_Repeat 269824 269870 58 + . . scaffold79 WUBlastX DNA_TcMar-Tc1 273193 273336 34 - . . scaffold79 WUBlastX DNA_TcMar-Tc1 273241 273333 43 - . . scaffold79 WUBlastX DNA_TcMar-Tc1 273244 273375 35 - . . scaffold79 WUBlastX DNA_TcMar-Tc1 273354 273590 50 - . . scaffold79 WUBlastX DNA_TcMar-Marin 273518 273793 55 - . . scaffold79 WUBlastX DNA_TcMar-Tc1 273844 274047 24 - . . scaffold79 WUBlastX LTR_Gypsy 275901 276455 63 - . . scaffold79 WUBlastX LTR_Gypsy 276006 276452 74 - . . scaffold79 WUBlastX LTR_Gypsy 276165 276455 80 - . . scaffold79 WUBlastX LTR_Gypsy 276451 276657 55 - . . scaffold79 TRF Tandem_Repeat 277851 277922 99 + . . scaffold79 TRF Tandem_Repeat 277860 277931 90 + . . scaffold79 GLEAN promoter 282972 283971 1 + . ID=CGI_10024621; scaffold79 GLEAN mRNA 283972 285126 1 + . ID=CGI_10024621; scaffold79 GLEAN promoter 287776 288775 1 + . ID=CGI_10024622; scaffold79 GLEAN mRNA 288776 300742 1 + . ID=CGI_10024622; scaffold79 TRF Tandem_Repeat 302085 302125 82 + . . scaffold79 TRF Tandem_Repeat 302443 302515 146 + . . scaffold79 TRF Tandem_Repeat 304245 305168 1103 + . . scaffold79 GLEAN mRNA 307470 313198 1 - . ID=CGI_10024623; scaffold79 GLEAN promoter 312143 313142 0.799666 + . ID=CGI_10024624; scaffold79 GLEAN mRNA 313143 388809 0.799666 + . ID=CGI_10024624; scaffold79 GLEAN promoter 313199 314198 1 - . ID=CGI_10024623; scaffold79 TRF Tandem_Repeat 316993 317069 93 + . . scaffold79 TRF Tandem_Repeat 317083 318044 1456 + . . scaffold79 TRF Tandem_Repeat 324843 324883 82 + . . scaffold79 TRF Tandem_Repeat 326652 327147 256 + . . scaffold79 TRF Tandem_Repeat 326659 326954 359 + . . scaffold79 TRF Tandem_Repeat 385583 385626 88 + . . scaffold79 TRF Tandem_Repeat 386490 387433 1816 + . . scaffold79 TRF Tandem_Repeat 389720 389772 106 + . . scaffold79 TRF Tandem_Repeat 393480 393513 52 + . . scaffold79 TRF Tandem_Repeat 400089 401029 1097 + . . scaffold79 GLEAN mRNA 401405 404196 0.99999 - . ID=CGI_10024625; scaffold79 GLEAN promoter 404197 405196 0.99999 - . ID=CGI_10024625; scaffold79 GLEAN promoter 406337 407336 1 + . ID=CGI_10024626; scaffold79 GLEAN mRNA 407337 414518 1 + . ID=CGI_10024626; scaffold79 TRF Tandem_Repeat 408598 408659 108 + . . scaffold79 GLEAN promoter 414140 415139 0.615036 + . ID=CGI_10024627; scaffold79 GLEAN mRNA 415140 431017 0.615036 + . ID=CGI_10024627; scaffold79 GLEAN mRNA 419787 431462 1 - . ID=CGI_10024628; scaffold79 TRF Tandem_Repeat 424354 424440 79 + . . scaffold79 TRF Tandem_Repeat 424384 424414 62 + . . scaffold79 GLEAN promoter 431463 432462 1 - . ID=CGI_10024628; scaffold79 GLEAN mRNA 433680 449267 0.999917 - . ID=CGI_10024629; scaffold79 TRF Tandem_Repeat 435558 435584 54 + . . scaffold79 TRF Tandem_Repeat 438301 438336 72 + . . scaffold79 GLEAN promoter 449268 450267 0.999917 - . ID=CGI_10024629; scaffold79 GLEAN mRNA 459479 460696 0.999451 - . ID=CGI_10024630; scaffold79 GLEAN promoter 460697 461696 0.999451 - . ID=CGI_10024630; scaffold79 TRF Tandem_Repeat 462213 462272 120 + . . scaffold79 TRF Tandem_Repeat 463443 463576 164 + . . scaffold79 TRF Tandem_Repeat 483338 484242 1562 + . . scaffold79 TRF Tandem_Repeat 488734 488793 84 + . . scaffold79 TRF Tandem_Repeat 488743 488802 75 + . . scaffold79 WUBlastX LINE_RTE-BovB 491854 491988 24 - . . scaffold79 WUBlastX LINE_RTE-BovB 492024 492143 57 - . . scaffold79 WUBlastX LINE_RTE-BovB 492146 492217 48 - . . scaffold79 WUBlastX LINE_RTE-BovB 492432 492815 148 - . . scaffold79 WUBlastX LINE_RTE-BovB 499656 499802 49 + . . scaffold79 WUBlastX LINE_RTE-BovB 499656 499925 20 + . . scaffold79 WUBlastX LINE_RTE-BovB 499919 500785 426 + . . scaffold79 WUBlastX LINE_RTE-BovB 500681 501157 48 + . . scaffold79 WUBlastX LINE_RTE-BovB 500687 501055 152 + . . scaffold79 WUBlastX LINE_RTE-BovB 501588 501665 23 + . . scaffold79 WUBlastX LINE_RTE-BovB 501603 501671 25 + . . scaffold79 WUBlastX LINE_RTE-BovB 501953 502225 150 + . . scaffold79 GLEAN mRNA 503000 504856 0.593391 - . ID=CGI_10024631; scaffold79 GLEAN promoter 504819 505818 1 + . ID=CGI_10024632; scaffold79 GLEAN promoter 504857 505856 0.593391 - . ID=CGI_10024631; scaffold79 TRF Tandem_Repeat 505536 505589 108 + . . scaffold79 GLEAN mRNA 505819 512806 1 + . ID=CGI_10024632; scaffold79 GLEAN mRNA 516707 521512 1 - . ID=CGI_10024633; scaffold79 TRF Tandem_Repeat 521281 521341 113 + . . scaffold79 GLEAN promoter 521513 522512 1 - . ID=CGI_10024633; scaffold79 TRF Tandem_Repeat 522843 524189 1647 + . . scaffold79 GLEAN promoter 531629 532628 0.903507 + . ID=CGI_10024634; scaffold79 GLEAN mRNA 532629 534770 0.903507 + . ID=CGI_10024634; scaffold79 GLEAN mRNA 538905 556191 1 - . ID=CGI_10024635; scaffold79 TRF Tandem_Repeat 551177 551223 67 + . . scaffold79 GLEAN promoter 556192 557191 1 - . ID=CGI_10024635; scaffold79 WUBlastX LINE_RTE-X 558728 559201 71 + . . scaffold79 WUBlastX LINE_RTE-X 559197 559283 23 + . . scaffold79 GLEAN mRNA 562898 567516 0.999572 - . ID=CGI_10024636; scaffold79 GLEAN promoter 567517 568516 0.999572 - . ID=CGI_10024636; scaffold79 GLEAN promoter 570723 571722 0.999064 + . ID=CGI_10024637; scaffold79 TRF Tandem_Repeat 571288 571346 118 + . . scaffold79 GLEAN mRNA 571723 588134 0.999064 + . ID=CGI_10024637; scaffold79 TRF Tandem_Repeat 582820 582850 62 + . . scaffold79 TRF Tandem_Repeat 593898 593942 90 + . . scaffold79 TRF Tandem_Repeat 596776 596834 109 + . . scaffold79 TRF Tandem_Repeat 598814 598866 106 + . . scaffold79 GLEAN promoter 599939 600938 0.999415 + . ID=CGI_10024638; scaffold79 GLEAN mRNA 600939 609357 0.999415 + . ID=CGI_10024638; scaffold79 TRF Tandem_Repeat 612599 612715 139 + . . scaffold79 GLEAN promoter 614833 615832 0.995957 + . ID=CGI_10024639; scaffold79 GLEAN mRNA 615833 626620 0.995957 + . ID=CGI_10024639; scaffold79 TRF Tandem_Repeat 623071 623103 66 + . . scaffold79 TRF Tandem_Repeat 624935 624983 98 + . . scaffold79 TRF Tandem_Repeat 628634 628696 126 + . . scaffold79 TRF Tandem_Repeat 630241 630280 80 + . . scaffold79 TRF Tandem_Repeat 630793 630828 63 + . . scaffold79 WUBlastX LINE_RTE-BovB 633593 633886 52 + . . scaffold79 WUBlastX LINE_RTE-BovB 633599 633835 154 + . . scaffold79 GLEAN mRNA 638765 650265 0.9985 - . ID=CGI_10024640; scaffold79 GLEAN promoter 650266 651265 0.9985 - . ID=CGI_10024640; scaffold79 GLEAN mRNA 655166 667588 0.839644 - . ID=CGI_10024641; scaffold79 GLEAN promoter 667589 668588 0.839644 - . ID=CGI_10024641; scaffold79 GLEAN promoter 672176 673175 0.999999 + . ID=CGI_10024642; scaffold79 GLEAN mRNA 673176 703722 0.999999 + . ID=CGI_10024642; scaffold79 TRF Tandem_Repeat 677098 677902 1193 + . . scaffold79 GLEAN mRNA 708469 709528 1 - . ID=CGI_10024643; scaffold79 GLEAN promoter 709529 710528 1 - . ID=CGI_10024643; scaffold79 WUBlastX LINE_RTE-BovB 728854 729057 85 + . . scaffold79 WUBlastX LINE_RTE-BovB 728988 729197 27 + . . scaffold79 WUBlastX LINE_RTE-BovB 729128 729244 53 + . . scaffold79 WUBlastX LINE_RTE-BovB 729187 729291 51 + . . scaffold79 WUBlastX LINE_RTE-BovB 729303 729554 207 + . . scaffold79 WUBlastX LINE_RTE-BovB 729957 730157 42 + . . scaffold79 WUBlastX LINE_RTE-BovB 730004 730294 75 + . . scaffold79 TRF Tandem_Repeat 740554 740604 102 + . . scaffold79 GLEAN promoter 743446 744445 0.76653 + . ID=CGI_10024644; scaffold79 GLEAN mRNA 744446 753778 0.76653 + . ID=CGI_10024644; scaffold79 TRF Tandem_Repeat 750658 750722 121 + . . scaffold79 TRF Tandem_Repeat 753822 753853 64 + . . scaffold79 TRF Tandem_Repeat 754786 754826 82 + . . scaffold79 GLEAN promoter 757728 758727 0.562597 + . ID=CGI_10024645; scaffold79 TRF Tandem_Repeat 758286 758318 57 + . . scaffold79 GLEAN mRNA 758728 768342 0.562597 + . ID=CGI_10024645; scaffold79 TRF Tandem_Repeat 761573 761654 155 + . . scaffold79 GLEAN mRNA 772715 826878 0.85926 - . ID=CGI_10024646; scaffold79 GLEAN promoter 773952 774951 0.592864 + . ID=CGI_10024647; scaffold79 GLEAN mRNA 774952 778188 0.592864 + . ID=CGI_10024647; scaffold79 TRF Tandem_Repeat 775808 775987 141 + . . scaffold79 TRF Tandem_Repeat 775839 776054 190 + . . scaffold79 TRF Tandem_Repeat 781563 781592 51 + . . scaffold79 TRF Tandem_Repeat 795655 795696 84 + . . scaffold79 TRF Tandem_Repeat 796376 796411 72 + . . scaffold79 TRF Tandem_Repeat 807401 807451 102 + . . scaffold79 TRF Tandem_Repeat 818960 819022 126 + . . scaffold79 GLEAN promoter 826879 827878 0.85926 - . ID=CGI_10024646; scaffold79 GLEAN mRNA 830754 832632 0.999987 - . ID=CGI_10024649; scaffold79 GLEAN promoter 832633 833632 0.999987 - . ID=CGI_10024649; scaffold79 GLEAN mRNA 834076 834267 0.999372 - . ID=CGI_10024650; scaffold79 GLEAN promoter 834268 835267 0.999372 - . ID=CGI_10024650; scaffold79 GLEAN mRNA 834269 854268 0.999674 - . ID=CGI_10024651; scaffold79 TRF Tandem_Repeat 845195 845320 76 + . . scaffold79 TRF Tandem_Repeat 845319 845489 171 + . . scaffold79 TRF Tandem_Repeat 846194 846265 135 + . . scaffold79 GLEAN promoter 854269 855268 0.999674 - . ID=CGI_10024651; scaffold79 TRF Tandem_Repeat 855377 855470 118 + . . scaffold79 TRF Tandem_Repeat 855554 855645 103 + . . scaffold79 TRF Tandem_Repeat 855734 855876 144 + . . scaffold79 TRF Tandem_Repeat 855953 856044 112 + . . scaffold79 WUBlastX LINE_L2 856058 856255 45 - . . scaffold79 WUBlastX LINE_L2 856085 856246 56 - . . scaffold79 WUBlastX LINE_CR1 856124 856279 34 - . . scaffold79 WUBlastX LINE_L2 856714 857202 67 - . . scaffold79 WUBlastX LINE_CR1 856963 857199 81 - . . scaffold79 WUBlastX LINE_CR1 857035 857202 100 - . . scaffold79 WUBlastX LINE_CR1-L2 857205 857408 48 - . . scaffold79 WUBlastX LINE_L2 857247 857414 70 - . . scaffold79 TRF Tandem_Repeat 866838 867049 270 + . . scaffold79 TRF Tandem_Repeat 866840 867058 280 + . . scaffold79 TRF Tandem_Repeat 867838 868092 259 + . . scaffold79 TRF Tandem_Repeat 867838 868092 321 + . . scaffold79 GLEAN mRNA 869143 880340 0.999287 - . ID=CGI_10024652; scaffold79 WUBlastX DNA_TcMar-Tc1 872781 873314 299 - . . scaffold79 WUBlastX DNA_TcMar-Tc1 873281 873499 47 - . . scaffold79 WUBlastX DNA_TcMar-Tc1 873314 873559 25 - . . scaffold79 WUBlastX DNA_TcMar-IS885 873586 873705 22 - . . scaffold79 GLEAN promoter 879710 880709 1 + . ID=CGI_10024653; scaffold79 GLEAN promoter 880341 881340 0.999287 - . ID=CGI_10024652; scaffold79 GLEAN mRNA 880710 892247 1 + . ID=CGI_10024653; scaffold79 TRF Tandem_Repeat 883829 883890 72 + . . scaffold79 TRF Tandem_Repeat 883829 883890 90 + . . scaffold79 WUBlastX LINE_L1-Tx1 886641 887588 20 - . . scaffold79 WUBlastX LINE_L1-Tx1 886758 887360 35 - . . scaffold79 GLEAN mRNA 889202 890646 1 - . ID=CGI_10024654; scaffold79 GLEAN promoter 890647 891646 1 - . ID=CGI_10024654; scaffold79 TRF Tandem_Repeat 893452 893646 90 + . . scaffold79 TRF Tandem_Repeat 897392 897443 52 + . . scaffold79 GLEAN promoter 899382 900381 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 899448 899516 52 + . . scaffold79 TRF Tandem_Repeat 899541 899636 58 + . . scaffold79 TRF Tandem_Repeat 899718 900156 123 + . . scaffold79 TRF Tandem_Repeat 899781 900340 285 + . . scaffold79 TRF Tandem_Repeat 899964 900162 73 + . . scaffold79 TRF Tandem_Repeat 900179 900277 76 + . . scaffold79 GLEAN mRNA 900382 915423 0.999978 + . ID=CGI_10024655; scaffold79 TRF Tandem_Repeat 900609 900836 97 + . . scaffold79 TRF Tandem_Repeat 900684 900772 56 + . . scaffold79 TRF Tandem_Repeat 900950 901048 78 + . . scaffold79 TRF Tandem_Repeat 901278 901359 78 + . . scaffold79 TRF Tandem_Repeat 901511 901576 57 + . . scaffold79 TRF Tandem_Repeat 901623 901710 56 + . . scaffold79 TRF Tandem_Repeat 901655 901759 56 + . . scaffold79 TRF Tandem_Repeat 901938 901995 59 + . . scaffold79 GLEAN mRNA 904351 911931 0.999676 - . ID=CGI_10024656; scaffold79 GLEAN promoter 911932 912931 0.999676 - . ID=CGI_10024656; scaffold79 GLEAN promoter 916115 917114 1 + . ID=CGI_10024657; scaffold79 GLEAN mRNA 917115 917588 1 + . ID=CGI_10024657; scaffold79 GLEAN mRNA 919781 920242 0.986675 - . ID=CGI_10024658; scaffold79 GLEAN promoter 920243 921242 0.986675 - . ID=CGI_10024658; scaffold79 GLEAN mRNA 920286 920939 0.448984 - . ID=CGI_10024659; scaffold79 GLEAN promoter 920940 921939 0.448984 - . ID=CGI_10024659; scaffold79 GLEAN mRNA 920991 923120 1 - . ID=CGI_10024660; scaffold79 GLEAN promoter 923121 924120 1 - . ID=CGI_10024660; scaffold79 TRF Tandem_Repeat 923402 923429 56 + . . scaffold79 TRF Tandem_Repeat 924656 924698 86 + . . scaffold79 GLEAN promoter 924968 925967 0.999676 + . ID=CGI_10024661; scaffold79 GLEAN mRNA 925968 930151 0.999676 + . ID=CGI_10024661; scaffold79 GLEAN mRNA 931823 932542 1 - . ID=CGI_10024662; scaffold79 GLEAN promoter 932543 933542 1 - . ID=CGI_10024662; scaffold79 GLEAN mRNA 956359 958135 1 - . ID=CGI_10024663; scaffold79 GLEAN promoter 958136 958250 1 - . ID=CGI_10024663; scaffold790 TRF Tandem_Repeat 9282 9364 157 + . . scaffold790 GLEAN mRNA 15920 17974 1 - . ID=CGI_10013161; scaffold790 GLEAN promoter 17975 18974 1 - . ID=CGI_10013161; scaffold790 GLEAN mRNA 30993 44802 0.963228 - . ID=CGI_10013162; scaffold790 GLEAN promoter 44803 45802 0.963228 - . ID=CGI_10013162; scaffold790 GLEAN promoter 45336 46335 0.764669 + . ID=CGI_10013163; scaffold790 GLEAN mRNA 46336 48934 0.764669 + . ID=CGI_10013163; scaffold790 GLEAN promoter 48844 49843 0.989838 + . ID=CGI_10013164; scaffold790 GLEAN mRNA 49844 64643 0.989838 + . ID=CGI_10013164; scaffold790 WUBlastX LINE_RTE-X 69089 69859 168 - . . scaffold790 WUBlastX LINE_RTE-X 69230 70936 722 - . . scaffold790 TRF Tandem_Repeat 73498 73573 152 + . . scaffold790 GLEAN mRNA 73993 74373 0.999999 - . ID=CGI_10013165; scaffold790 GLEAN promoter 74374 75373 0.999999 - . ID=CGI_10013165; scaffold790 GLEAN mRNA 84128 84478 0.733495 - . ID=CGI_10013166; scaffold790 GLEAN promoter 84479 85478 0.733495 - . ID=CGI_10013166; scaffold790 WUBlastX DNA_Harbinger 88734 89150 120 + . . scaffold790 WUBlastX DNA_Harbinger 88824 89150 142 + . . scaffold790 WUBlastX DNA_Harbinger 89212 89502 234 + . . scaffold790 WUBlastX DNA_Harbinger 89454 89684 28 + . . scaffold790 TRF Tandem_Repeat 90249 90315 50 + . . scaffold790 TRF Tandem_Repeat 90271 90317 58 + . . scaffold790 TRF Tandem_Repeat 93439 93685 288 + . . scaffold790 WUBlastX LINE_RTE-BovB 97273 97437 77 + . . scaffold790 WUBlastX LINE_RTE-BovB 97276 97551 55 + . . scaffold790 WUBlastX LINE_RTE-BovB 97676 97840 26 + . . scaffold790 WUBlastX LINE_RTE-BovB 97754 97840 28 + . . scaffold790 WUBlastX LTR_Gypsy 102578 102796 52 + . . scaffold790 WUBlastX LTR_Gypsy 102617 102811 62 + . . scaffold790 WUBlastX LTR_Gypsy 102650 103279 51 + . . scaffold790 WUBlastX LTR_Gypsy 103353 104015 282 + . . scaffold790 WUBlastX LTR_Gypsy 103482 104417 401 + . . scaffold790 WUBlastX LTR_Gypsy 104389 104442 45 + . . scaffold790 WUBlastX LTR_Gypsy 104447 104779 188 + . . scaffold790 WUBlastX LTR_Gypsy 104760 104843 20 + . . scaffold790 WUBlastX LTR_Gypsy 105220 105315 22 + . . scaffold790 TRF Tandem_Repeat 107861 109391 2129 + . . scaffold790 WUBlastX LINE_L1-Tx1 114221 114571 67 - . . scaffold790 WUBlastX LINE_L1-Tx1 114242 114664 35 - . . scaffold790 WUBlastX LINE_L1-Tx1 114595 114810 33 - . . scaffold790 WUBlastX DNA_IS4EU 115627 115674 32 + . . scaffold790 TRF Tandem_Repeat 115837 115876 71 + . . scaffold790 WUBlastX DNA_IS4EU 116613 117092 146 + . . scaffold790 WUBlastX DNA_IS4EU 117059 117343 178 + . . scaffold790 WUBlastX DNA_IS4EU 117104 117343 207 + . . scaffold790 WUBlastX DNA_IS4EU 117350 117514 94 + . . scaffold790 WUBlastX DNA_IS4EU 118004 118312 120 - . . scaffold790 WUBlastX LTR_Gypsy 119294 119926 143 - . . scaffold790 WUBlastX LTR_Gypsy 119405 120973 985 - . . scaffold790 WUBlastX LTR_Gypsy 120966 121217 210 - . . scaffold790 WUBlastX LTR_Gypsy-Cigr 121230 122630 732 - . . scaffold790 WUBlastX LTR_Gypsy 122217 122708 67 - . . scaffold790 WUBlastX LTR_Gypsy 122322 123425 64 - . . scaffold790 WUBlastX LTR_Gypsy-Cigr 122916 123464 195 - . . scaffold790 WUBlastX LTR_Gypsy 123252 123599 33 - . . scaffold790 WUBlastX DNA_IS4EU 124655 124930 181 - . . scaffold790 WUBlastX DNA_IS4EU 124902 125810 429 - . . scaffold790 WUBlastX LINE_L1-Tx1 126461 126625 47 - . . scaffold790 WUBlastX LINE_L1-Tx1 126607 126879 131 - . . scaffold790 WUBlastX LINE_L1-Tx1 126939 127517 122 - . . scaffold790 WUBlastX LINE_L1-Tx1 127092 127517 309 - . . scaffold790 WUBlastX LINE_L1-Tx1 127523 127669 80 + . . scaffold790 WUBlastX LINE_L1 127581 128111 151 + . . scaffold790 WUBlastX LINE_L1-Tx1 127698 128111 302 + . . scaffold790 WUBlastX LINE_L1-Tx1 127713 128261 153 + . . scaffold790 WUBlastX LINE_L1-Tx1 128255 129022 224 + . . scaffold790 WUBlastX LINE_L1-Tx1 128255 128854 375 + . . scaffold790 WUBlastX DNA_Maverick 132772 133248 232 + . . scaffold790 WUBlastX DNA_Maverick 133270 133728 90 + . . scaffold790 WUBlastX DNA_Maverick 133315 133698 95 + . . scaffold790 WUBlastX DNA_Maverick 133852 134478 357 + . . scaffold790 WUBlastX DNA_Maverick 135368 137122 546 + . . scaffold790 WUBlastX DNA_Maverick 135953 137752 1034 + . . scaffold790 WUBlastX DNA_Maverick 137689 137850 127 + . . scaffold790 WUBlastX DNA_Maverick 137854 138381 169 + . . scaffold790 WUBlastX DNA_Maverick 137935 138432 303 + . . scaffold790 WUBlastX DNA_Maverick 138459 138779 199 + . . scaffold790 GLEAN promoter 139596 140595 0.721377 + . ID=CGI_10013167; scaffold790 GLEAN mRNA 140596 152006 0.721377 + . ID=CGI_10013167; scaffold790 GLEAN promoter 151187 152186 0.911632 + . ID=CGI_10013168; scaffold790 GLEAN mRNA 152187 157190 0.911632 + . ID=CGI_10013168; scaffold790 TRF Tandem_Repeat 154580 154616 56 + . . scaffold790 GLEAN promoter 156786 157785 0.837388 + . ID=CGI_10013169; scaffold790 TRF Tandem_Repeat 157522 157588 125 + . . scaffold790 GLEAN mRNA 157786 187940 0.837388 + . ID=CGI_10013169; scaffold790 TRF Tandem_Repeat 158965 159252 354 + . . scaffold790 TRF Tandem_Repeat 173679 173755 109 + . . scaffold790 TRF Tandem_Repeat 173753 173827 150 + . . scaffold790 TRF Tandem_Repeat 176268 176566 341 + . . scaffold790 TRF Tandem_Repeat 176268 176566 287 + . . scaffold790 GLEAN mRNA 188510 204833 0.89274 - . ID=CGI_10013170; scaffold790 GLEAN promoter 204834 205833 0.89274 - . ID=CGI_10013170; scaffold790 TRF Tandem_Repeat 213367 213420 83 + . . scaffold790 TRF Tandem_Repeat 213443 213497 56 + . . scaffold790 TRF Tandem_Repeat 215006 215042 74 + . . scaffold790 TRF Tandem_Repeat 215289 215367 83 + . . scaffold790 TRF Tandem_Repeat 215289 215367 133 + . . scaffold790 TRF Tandem_Repeat 215702 215739 60 + . . scaffold790 TRF Tandem_Repeat 216682 216720 69 + . . scaffold790 GLEAN mRNA 221752 222957 0.977562 - . ID=CGI_10013171; scaffold790 WUBlastX LINE_L1 222079 222612 65 - . . scaffold790 WUBlastX LINE_L1 222169 222741 97 - . . scaffold790 WUBlastX LINE_L1 222214 222879 85 - . . scaffold790 GLEAN promoter 222958 223957 0.977562 - . ID=CGI_10013171; scaffold790 WUBlastX DNA_IS4EU 223297 223419 45 + . . scaffold790 WUBlastX DNA_IS4EU 223580 223750 70 + . . scaffold790 WUBlastX DNA_Kolobok-IS4 223907 224467 26 + . . scaffold790 WUBlastX DNA_IS4EU 224021 224443 120 + . . scaffold790 WUBlastX DNA_IS4EU 224662 225102 174 + . . scaffold790 WUBlastX DNA_IS4EU 225461 225634 117 - . . scaffold790 WUBlastX DNA_IS4EU 225624 225968 247 - . . scaffold790 WUBlastX DNA_IS4EU 226066 226230 115 - . . scaffold790 WUBlastX DNA_IS4EU 226232 226333 20 - . . scaffold790 WUBlastX LTR_Gypsy 228964 229626 51 - . . scaffold790 WUBlastX LTR_Gypsy-Cigr 229279 229626 206 - . . scaffold790 WUBlastX LTR_Gypsy 229336 229665 236 - . . scaffold790 WUBlastX LTR_Gypsy 229351 229800 161 - . . scaffold790 WUBlastX LTR_Gypsy 229650 229847 133 - . . scaffold790 WUBlastX LTR_Gypsy 229856 229987 63 - . . scaffold790 WUBlastX LTR_Gypsy 229880 230305 124 - . . scaffold790 WUBlastX LTR_Gypsy-Cigr 229880 230215 190 - . . scaffold790 WUBlastX LTR_Gypsy 230776 231012 51 - . . scaffold790 WUBlastX LTR_Gypsy 231146 231256 26 - . . scaffold790 WUBlastX LTR_Gypsy 231493 231777 41 - . . scaffold790 TRF Tandem_Repeat 233955 234093 116 + . . scaffold790 GLEAN promoter 238122 239121 0.83657 + . ID=CGI_10013172; scaffold790 GLEAN mRNA 239122 257283 0.83657 + . ID=CGI_10013172; scaffold790 WUBlastX LINE_L2 240489 240740 50 - . . scaffold790 WUBlastX LINE_L2 240671 241042 130 - . . scaffold790 WUBlastX LINE_CR1-L2 240758 241090 178 - . . scaffold790 WUBlastX LINE_CR1-L2 240836 241060 197 - . . scaffold790 WUBlastX LINE_L2 240851 241231 72 - . . scaffold790 TRF Tandem_Repeat 248192 248234 86 + . . scaffold790 GLEAN promoter 256402 257401 0.455056 + . ID=CGI_10013173; scaffold790 GLEAN mRNA 257402 258583 0.455056 + . ID=CGI_10013173; scaffold790 GLEAN mRNA 259565 264090 0.99807 - . ID=CGI_10013174; scaffold790 GLEAN promoter 263176 264175 0.488232 + . ID=CGI_10013175; scaffold790 GLEAN promoter 264091 265090 0.99807 - . ID=CGI_10013174; scaffold790 GLEAN mRNA 264176 285099 0.488232 + . ID=CGI_10013175; scaffold790 TRF Tandem_Repeat 268349 268423 141 + . . scaffold790 TRF Tandem_Repeat 270573 271017 746 + . . scaffold790 TRF Tandem_Repeat 270573 271183 817 + . . scaffold790 TRF Tandem_Repeat 270573 271183 799 + . . scaffold790 TRF Tandem_Repeat 270995 271573 678 + . . scaffold790 TRF Tandem_Repeat 277782 277850 138 + . . scaffold790 GLEAN mRNA 285096 298847 0.992511 - . ID=CGI_10013176; scaffold790 TRF Tandem_Repeat 289446 290452 1362 + . . scaffold790 TRF Tandem_Repeat 293072 293140 75 + . . scaffold790 TRF Tandem_Repeat 294196 295547 2013 + . . scaffold790 TRF Tandem_Repeat 295566 295824 394 + . . scaffold790 GLEAN promoter 298848 299847 0.992511 - . ID=CGI_10013176; scaffold790 TRF Tandem_Repeat 299449 299650 178 + . . scaffold790 TRF Tandem_Repeat 308654 308858 302 + . . scaffold790 WUBlastX LTR_Gypsy-Cigr 322992 323240 69 - . . scaffold790 GLEAN promoter 327566 328565 0.698066 + . ID=CGI_10013177; scaffold790 GLEAN mRNA 328566 336282 0.698066 + . ID=CGI_10013177; scaffold791 GLEAN mRNA 2926 3153 0.744039 - . ID=CGI_10000498; scaffold791 GLEAN promoter 3154 4153 0.744039 - . ID=CGI_10000498; scaffold791 GLEAN mRNA 6013 6258 0.592172 - . ID=CGI_10000499; scaffold791 GLEAN promoter 6259 6304 0.592172 - . ID=CGI_10000499; scaffold792 GLEAN mRNA 558 5100 0.993364 - . ID=CGI_10000407; scaffold792 GLEAN promoter 5101 5326 0.993364 - . ID=CGI_10000407; scaffold793 WUBlastX LINE_RTE-BovB 768 1148 265 + . . scaffold793 WUBlastX LINE_RTE-BovB 768 1244 135 + . . scaffold793 WUBlastX LINE_RTE-BovB 1163 1381 120 + . . scaffold793 WUBlastX LINE_RTE-BovB 1409 1516 47 + . . scaffold793 WUBlastX LINE_RTE-BovB 1524 1622 101 + . . scaffold793 GLEAN mRNA 3595 9746 0.959188 - . ID=CGI_10010887; scaffold793 TRF Tandem_Repeat 4444 4477 61 + . . scaffold793 GLEAN promoter 9747 10746 0.959188 - . ID=CGI_10010887; scaffold793 GLEAN mRNA 10612 13353 0.999161 - . ID=CGI_10010888; scaffold793 GLEAN promoter 13354 14353 0.999161 - . ID=CGI_10010888; scaffold793 TRF Tandem_Repeat 16008 16080 146 + . . scaffold793 GLEAN mRNA 17194 22516 0.937847 - . ID=CGI_10010889; scaffold793 TRF Tandem_Repeat 19968 20106 219 + . . scaffold793 GLEAN promoter 22517 23516 0.937847 - . ID=CGI_10010889; scaffold793 TRF Tandem_Repeat 23477 23520 88 + . . scaffold793 GLEAN promoter 27215 28214 0.999351 + . ID=CGI_10010890; scaffold793 GLEAN mRNA 28215 33981 0.999351 + . ID=CGI_10010890; scaffold793 GLEAN mRNA 38232 40068 1 - . ID=CGI_10010891; scaffold793 GLEAN promoter 40069 41068 1 - . ID=CGI_10010891; scaffold793 TRF Tandem_Repeat 59714 59744 62 + . . scaffold793 TRF Tandem_Repeat 60219 60326 99 + . . scaffold793 TRF Tandem_Repeat 60237 60345 114 + . . scaffold793 TRF Tandem_Repeat 60260 60345 91 + . . scaffold793 GLEAN promoter 60685 61684 0.384935 + . ID=CGI_10010892; scaffold793 TRF Tandem_Repeat 61389 61552 98 + . . scaffold793 GLEAN mRNA 61685 72905 0.384935 + . ID=CGI_10010892; scaffold793 WUBlastX DNA_hAT-Blackja 62038 62319 50 - . . scaffold793 WUBlastX DNA_NOF 62970 63155 89 + . . scaffold793 WUBlastX DNA_NOF 63663 63770 58 + . . scaffold793 WUBlastX DNA_MuDR 63663 63794 53 + . . scaffold793 WUBlastX DNA_NOF 67491 67610 31 + . . scaffold793 WUBlastX DNA_NOF 67557 67619 32 + . . scaffold793 WUBlastX LINE_Penelope 71568 71693 51 + . . scaffold793 WUBlastX LINE_Penelope 71678 71953 42 + . . scaffold793 WUBlastX LINE_Penelope 71962 72099 45 + . . scaffold793 TRF Tandem_Repeat 73214 73435 213 + . . scaffold793 TRF Tandem_Repeat 73454 73566 129 + . . scaffold793 GLEAN promoter 74104 75103 0.838168 + . ID=CGI_10010893; scaffold793 GLEAN mRNA 75104 75532 0.838168 + . ID=CGI_10010893; scaffold793 TRF Tandem_Repeat 80913 83062 1296 + . . scaffold793 TRF Tandem_Repeat 82592 83062 400 + . . scaffold793 TRF Tandem_Repeat 86716 86835 81 + . . scaffold793 TRF Tandem_Repeat 86740 86839 112 + . . scaffold793 TRF Tandem_Repeat 87140 87173 68 + . . scaffold793 TRF Tandem_Repeat 103073 103099 54 + . . scaffold793 GLEAN mRNA 103917 119105 0.650267 - . ID=CGI_10010894; scaffold793 GLEAN promoter 119106 120105 0.650267 - . ID=CGI_10010894; scaffold793 GLEAN promoter 121568 122567 0.999641 + . ID=CGI_10010895; scaffold793 TRF Tandem_Repeat 121773 121805 59 + . . scaffold793 GLEAN mRNA 122568 123197 0.999641 + . ID=CGI_10010895; scaffold793 TRF Tandem_Repeat 129226 129298 51 + . . scaffold793 TRF Tandem_Repeat 129272 129298 54 + . . scaffold793 WUBlastX LINE_RTE-X 133191 133664 63 + . . scaffold793 WUBlastX LINE_RTE-X 133382 133729 98 + . . scaffold793 TRF Tandem_Repeat 134513 134570 107 + . . scaffold793 TRF Tandem_Repeat 145589 145613 50 + . . scaffold793 TRF Tandem_Repeat 147637 147661 50 + . . scaffold793 WUBlastX LINE_RTE-BovB 154024 154308 158 + . . scaffold793 TRF Tandem_Repeat 155517 155563 85 + . . scaffold793 GLEAN promoter 178817 179816 0.959315 + . ID=CGI_10010896; scaffold793 GLEAN mRNA 179817 180488 0.959315 + . ID=CGI_10010896; scaffold793 GLEAN promoter 187335 188334 0.962647 + . ID=CGI_10010897; scaffold793 GLEAN mRNA 188335 208073 0.962647 + . ID=CGI_10010897; scaffold793 TRF Tandem_Repeat 190156 191334 1290 + . . scaffold793 TRF Tandem_Repeat 195503 195649 258 + . . scaffold793 GLEAN promoter 207754 208753 1 + . ID=CGI_10010898; scaffold793 GLEAN mRNA 208754 219993 1 + . ID=CGI_10010898; scaffold793 TRF Tandem_Repeat 210026 210051 52 + . . scaffold793 GLEAN promoter 219025 220024 0.702157 + . ID=CGI_10010899; scaffold793 GLEAN mRNA 220025 225385 0.702157 + . ID=CGI_10010899; scaffold793 TRF Tandem_Repeat 221210 221374 210 + . . scaffold793 TRF Tandem_Repeat 221300 221422 219 + . . scaffold793 TRF Tandem_Repeat 226509 226569 115 + . . scaffold793 TRF Tandem_Repeat 228535 228570 72 + . . scaffold793 TRF Tandem_Repeat 228570 228627 107 + . . scaffold793 GLEAN promoter 231201 232200 0.448337 + . ID=CGI_10010900; scaffold793 GLEAN mRNA 232201 242230 0.448337 + . ID=CGI_10010900; scaffold793 TRF Tandem_Repeat 236684 236735 104 + . . scaffold793 GLEAN promoter 242075 243074 0.615205 + . ID=CGI_10010901; scaffold793 TRF Tandem_Repeat 242965 243002 76 + . . scaffold793 GLEAN mRNA 243075 256310 0.615205 + . ID=CGI_10010901; scaffold793 WUBlastX LINE_RTE-X 263561 263713 65 - . . scaffold793 WUBlastX LINE_RTE-X 263609 263701 72 - . . scaffold793 GLEAN promoter 265065 266064 0.999676 + . ID=CGI_10010902; scaffold793 GLEAN mRNA 266065 278252 0.999676 + . ID=CGI_10010902; scaffold793 TRF Tandem_Repeat 266373 266418 85 + . . scaffold793 TRF Tandem_Repeat 273761 273790 60 + . . scaffold794 WUBlastX LTR_Gypsy 796 942 50 - . . scaffold794 WUBlastX LTR_Gypsy 974 1108 63 - . . scaffold794 TRF Tandem_Repeat 5105 5139 52 + . . scaffold794 TRF Tandem_Repeat 23744 24525 959 + . . scaffold794 WUBlastX LINE_Penelope 28854 29147 46 + . . scaffold794 TRF Tandem_Repeat 33736 33765 60 + . . scaffold794 GLEAN mRNA 34460 38499 0.999922 - . ID=CGI_10017134; scaffold794 WUBlastX DNA_Crypton 36893 37609 177 - . . scaffold794 GLEAN promoter 38500 39499 0.999922 - . ID=CGI_10017134; scaffold794 GLEAN promoter 44534 45533 0.987306 + . ID=CGI_10017135; scaffold794 GLEAN mRNA 45534 47734 0.987306 + . ID=CGI_10017135; scaffold794 TRF Tandem_Repeat 55114 55173 113 + . . scaffold794 TRF Tandem_Repeat 56026 56068 59 + . . scaffold794 TRF Tandem_Repeat 56034 56065 55 + . . scaffold794 TRF Tandem_Repeat 56238 57539 1945 + . . scaffold794 TRF Tandem_Repeat 61165 61276 84 + . . scaffold794 TRF Tandem_Repeat 62519 62640 154 + . . scaffold794 GLEAN promoter 65441 66440 0.999826 + . ID=CGI_10017136; scaffold794 GLEAN mRNA 66441 78697 0.999826 + . ID=CGI_10017136; scaffold794 TRF Tandem_Repeat 68403 68452 73 + . . scaffold794 TRF Tandem_Repeat 68418 68460 52 + . . scaffold794 TRF Tandem_Repeat 71897 71939 86 + . . scaffold794 TRF Tandem_Repeat 74429 74454 52 + . . scaffold794 WUBlastX LINE_Penelope 75112 75468 55 + . . scaffold794 WUBlastX LINE_Penelope 75178 75546 24 + . . scaffold794 TRF Tandem_Repeat 84288 84340 88 + . . scaffold794 TRF Tandem_Repeat 87551 87585 56 + . . scaffold794 TRF Tandem_Repeat 88622 88654 50 + . . scaffold794 TRF Tandem_Repeat 88758 88795 76 + . . scaffold794 TRF Tandem_Repeat 89146 89174 58 + . . scaffold794 GLEAN promoter 89200 90199 0.990344 + . ID=CGI_10017138; scaffold794 TRF Tandem_Repeat 89335 89369 70 + . . scaffold794 TRF Tandem_Repeat 89446 89475 60 + . . scaffold794 GLEAN mRNA 90200 93809 0.990344 + . ID=CGI_10017138; scaffold794 WUBlastX LINE_L1-Tx1 95486 96457 55 - . . scaffold794 WUBlastX LINE_L1-Tx1 95666 96454 226 - . . scaffold794 WUBlastX LINE_L1-Tx1 96402 96560 47 - . . scaffold794 WUBlastX LINE_L1-Tx1 97990 100035 889 - . . scaffold794 GLEAN mRNA 100191 103914 0.814097 - . ID=CGI_10017139; scaffold794 GLEAN promoter 103915 104914 0.814097 - . ID=CGI_10017139; scaffold794 TRF Tandem_Repeat 105057 105231 215 + . . scaffold794 WUBlastX LTR_DIRS 106207 106542 36 + . . scaffold794 GLEAN mRNA 106976 115704 1 - . ID=CGI_10017140; scaffold794 TRF Tandem_Repeat 109314 109480 128 + . . scaffold794 TRF Tandem_Repeat 113071 113108 76 + . . scaffold794 TRF Tandem_Repeat 113951 114319 412 + . . scaffold794 TRF Tandem_Repeat 113951 114319 430 + . . scaffold794 GLEAN promoter 115705 116704 1 - . ID=CGI_10017140; scaffold794 GLEAN mRNA 119416 129734 0.998796 - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 120320 121151 1121 + . . scaffold794 TRF Tandem_Repeat 123667 123820 238 + . . scaffold794 TRF Tandem_Repeat 126646 127087 647 + . . scaffold794 TRF Tandem_Repeat 128002 128045 72 + . . scaffold794 TRF Tandem_Repeat 128183 129239 1609 + . . scaffold794 GLEAN promoter 129735 130734 0.998796 - . ID=CGI_10017141; scaffold794 TRF Tandem_Repeat 130183 130329 73 + . . scaffold794 GLEAN promoter 130231 131230 0.777732 + . ID=CGI_10017142; scaffold794 TRF Tandem_Repeat 130245 130374 93 + . . scaffold794 GLEAN mRNA 131231 150247 0.777732 + . ID=CGI_10017142; scaffold794 TRF Tandem_Repeat 133592 133903 588 + . . scaffold794 TRF Tandem_Repeat 134507 134608 195 + . . scaffold794 TRF Tandem_Repeat 142441 142483 86 + . . scaffold794 TRF Tandem_Repeat 146525 146565 82 + . . scaffold794 GLEAN promoter 151388 152387 1 + . ID=CGI_10017143; scaffold794 GLEAN mRNA 152388 156787 1 + . ID=CGI_10017143; scaffold794 GLEAN promoter 158273 159272 1 + . ID=CGI_10017144; scaffold794 GLEAN mRNA 159273 159806 1 + . ID=CGI_10017144; scaffold794 GLEAN mRNA 162390 164887 0.987952 - . ID=CGI_10017145; scaffold794 GLEAN promoter 164888 165887 0.987952 - . ID=CGI_10017145; scaffold794 GLEAN promoter 165534 166533 0.192364 + . ID=CGI_10017146; scaffold794 GLEAN mRNA 166534 180784 0.192364 + . ID=CGI_10017146; scaffold794 TRF Tandem_Repeat 170631 171617 1250 + . . scaffold794 TRF Tandem_Repeat 174580 174813 468 + . . scaffold794 TRF Tandem_Repeat 182449 182736 342 + . . scaffold794 TRF Tandem_Repeat 183421 183483 108 + . . scaffold794 TRF Tandem_Repeat 184057 184298 403 + . . scaffold794 TRF Tandem_Repeat 186814 187683 1187 + . . scaffold794 GLEAN mRNA 201530 203326 0.999661 - . ID=CGI_10017147; scaffold794 GLEAN promoter 203327 204326 0.999661 - . ID=CGI_10017147; scaffold794 GLEAN promoter 204044 205043 0.999676 + . ID=CGI_10017148; scaffold794 GLEAN mRNA 205044 219540 0.999676 + . ID=CGI_10017148; scaffold794 TRF Tandem_Repeat 208037 209243 1957 + . . scaffold794 TRF Tandem_Repeat 209603 210462 1414 + . . scaffold794 TRF Tandem_Repeat 209603 210462 1432 + . . scaffold794 TRF Tandem_Repeat 210459 211098 774 + . . scaffold794 TRF Tandem_Repeat 210459 211098 1074 + . . scaffold794 TRF Tandem_Repeat 213838 214058 210 + . . scaffold794 TRF Tandem_Repeat 213859 214160 331 + . . scaffold794 TRF Tandem_Repeat 214106 214161 52 + . . scaffold794 TRF Tandem_Repeat 219549 219575 54 + . . scaffold794 TRF Tandem_Repeat 220958 221077 123 + . . scaffold794 TRF Tandem_Repeat 220961 221525 493 + . . scaffold794 TRF Tandem_Repeat 221098 221525 457 + . . scaffold794 TRF Tandem_Repeat 221098 221525 460 + . . scaffold794 GLEAN mRNA 224901 239307 0.731792 - . ID=CGI_10017149; scaffold794 TRF Tandem_Repeat 227030 227068 78 + . . scaffold794 TRF Tandem_Repeat 231843 231890 53 + . . scaffold794 TRF Tandem_Repeat 232955 233122 309 + . . scaffold794 TRF Tandem_Repeat 236003 236537 755 + . . scaffold794 GLEAN promoter 239308 240307 0.731792 - . ID=CGI_10017149; scaffold794 GLEAN mRNA 246514 246687 0.749266 - . ID=CGI_10017150; scaffold794 GLEAN promoter 246688 247687 0.749266 - . ID=CGI_10017150; scaffold794 GLEAN promoter 248284 249283 0.999375 + . ID=CGI_10017151; scaffold794 GLEAN mRNA 249284 250069 0.999375 + . ID=CGI_10017151; scaffold794 GLEAN promoter 250355 251354 1 + . ID=CGI_10017152; scaffold794 GLEAN mRNA 251355 264307 1 + . ID=CGI_10017152; scaffold794 TRF Tandem_Repeat 252673 252994 581 + . . scaffold794 TRF Tandem_Repeat 252673 252994 526 + . . scaffold794 TRF Tandem_Repeat 252673 252994 562 + . . scaffold794 TRF Tandem_Repeat 253197 253843 1057 + . . scaffold794 TRF Tandem_Repeat 254246 254755 759 + . . scaffold794 TRF Tandem_Repeat 258921 259832 1426 + . . scaffold794 TRF Tandem_Repeat 261139 261379 428 + . . scaffold794 WUBlastX DNA_Harbinger 262434 262511 50 + . . scaffold794 WUBlastX DNA_Harbinger 263194 263304 37 + . . scaffold794 WUBlastX DNA_Harbinger 263259 263363 30 + . . scaffold794 WUBlastX DNA_Harbinger 264524 264670 48 + . . scaffold794 TRF Tandem_Repeat 266091 268656 2813 + . . scaffold794 TRF Tandem_Repeat 266091 268663 2519 + . . scaffold794 WUBlastX DNA_TcMar-Fot1 269509 269847 72 - . . scaffold794 WUBlastX DNA_TcMar-Fot1 269560 269847 114 - . . scaffold794 WUBlastX DNA_TcMar-Fot1 269590 269940 78 - . . scaffold794 WUBlastX DNA_TcMar-Fot1 270995 271105 20 - . . scaffold794 WUBlastX DNA_TcMar-Fot1 271095 271646 166 - . . scaffold794 GLEAN mRNA 271227 282643 0.491343 - . ID=CGI_10017153; scaffold794 WUBlastX DNA_TcMar-Fot1 271651 271869 86 - . . scaffold794 WUBlastX LTR_Gypsy 280600 280662 23 + . . scaffold794 WUBlastX LTR_Gypsy 280819 281007 44 + . . scaffold794 WUBlastX LTR_Gypsy-Cigr 280858 281007 116 + . . scaffold794 WUBlastX LTR_Gypsy 280988 281248 80 + . . scaffold794 WUBlastX LTR_Gypsy 281021 281218 168 + . . scaffold794 WUBlastX LTR_Gypsy 281424 281468 22 + . . scaffold794 WUBlastX LTR_Gypsy 281467 281667 26 + . . scaffold794 WUBlastX LTR_Gypsy 281499 282110 83 + . . scaffold794 WUBlastX LTR_Gypsy 281601 282110 280 + . . scaffold794 WUBlastX LTR_Gypsy 281604 282245 122 + . . scaffold794 WUBlastX LTR_Gypsy-Cigr 282134 282292 33 + . . scaffold794 GLEAN promoter 282644 283643 0.491343 - . ID=CGI_10017153; scaffold794 TRF Tandem_Repeat 283003 283852 1233 + . . scaffold794 GLEAN promoter 285440 286439 0.999372 + . ID=CGI_10017154; scaffold794 WUBlastX LINE_L2 285928 286371 83 + . . scaffold794 WUBlastX LINE_CR1-L2 286000 286392 96 + . . scaffold794 GLEAN mRNA 286440 286721 0.999372 + . ID=CGI_10017154; scaffold794 TRF Tandem_Repeat 308342 308370 58 + . . scaffold794 GLEAN mRNA 308972 320828 0.696321 - . ID=CGI_10017155; scaffold794 TRF Tandem_Repeat 309536 310363 1052 + . . scaffold794 TRF Tandem_Repeat 316954 317166 96 + . . scaffold794 TRF Tandem_Repeat 316954 317165 162 + . . scaffold794 TRF Tandem_Repeat 317059 317174 89 + . . scaffold794 WUBlastX LINE_L1-Tx1 317235 318629 449 - . . scaffold794 WUBlastX LINE_RTE-BovB 318141 318902 66 - . . scaffold794 GLEAN promoter 320829 321828 0.696321 - . ID=CGI_10017155; scaffold794 TRF Tandem_Repeat 322795 322830 63 + . . scaffold794 GLEAN mRNA 323842 328462 0.63388 - . ID=CGI_10017156; scaffold794 TRF Tandem_Repeat 324724 324778 58 + . . scaffold794 GLEAN promoter 328463 329462 0.63388 - . ID=CGI_10017156; scaffold794 WUBlastX DNA_En-Spm 328825 330708 1287 - . . scaffold794 GLEAN promoter 338806 339805 0.593383 + . ID=CGI_10017157; scaffold794 GLEAN mRNA 339806 342454 0.593383 + . ID=CGI_10017157; scaffold794 TRF Tandem_Repeat 342680 342760 153 + . . scaffold794 TRF Tandem_Repeat 343980 344177 274 + . . scaffold794 TRF Tandem_Repeat 343980 344178 91 + . . scaffold794 TRF Tandem_Repeat 348281 348697 292 + . . scaffold794 TRF Tandem_Repeat 348310 348695 334 + . . scaffold794 WUBlastX LINE_L1-Tx1 359775 359873 24 + . . scaffold794 WUBlastX LINE_L1-Tx1 361058 361312 29 + . . scaffold794 TRF Tandem_Repeat 363387 363443 114 + . . scaffold794 TRF Tandem_Repeat 363760 363801 75 + . . scaffold794 TRF Tandem_Repeat 365315 365350 72 + . . scaffold794 TRF Tandem_Repeat 365888 366016 116 + . . scaffold794 TRF Tandem_Repeat 366550 366627 75 + . . scaffold794 TRF Tandem_Repeat 366550 366627 75 + . . scaffold794 TRF Tandem_Repeat 367216 367460 224 + . . scaffold794 TRF Tandem_Repeat 367216 367460 269 + . . scaffold794 GLEAN mRNA 378971 426999 0.796099 - . ID=CGI_10017158; scaffold794 TRF Tandem_Repeat 381871 381946 134 + . . scaffold794 TRF Tandem_Repeat 383156 383200 90 + . . scaffold794 TRF Tandem_Repeat 383616 383662 94 + . . scaffold794 WUBlastX DNA_TcMar-Fot1 393426 394751 327 - . . scaffold794 WUBlastX DNA_TcMar-Fot1 393780 394775 340 - . . scaffold794 WUBlastX DNA_TcMar-Fot1 394801 394872 36 - . . scaffold794 WUBlastX DNA_TcMar-Fot1 394813 395082 56 - . . scaffold794 WUBlastX DNA_TcMar-Fot1 394816 394971 75 - . . scaffold794 TRF Tandem_Repeat 396977 397045 122 + . . scaffold794 TRF Tandem_Repeat 400046 400101 112 + . . scaffold794 TRF Tandem_Repeat 417811 417850 53 + . . scaffold794 GLEAN promoter 427000 427999 0.796099 - . ID=CGI_10017158; scaffold794 TRF Tandem_Repeat 435953 435989 74 + . . scaffold794 GLEAN promoter 437017 438016 0.648541 + . ID=CGI_10017159; scaffold794 GLEAN mRNA 438017 438610 0.648541 + . ID=CGI_10017159; scaffold794 TRF Tandem_Repeat 440266 440326 122 + . . scaffold794 TRF Tandem_Repeat 444749 444791 86 + . . scaffold794 TRF Tandem_Repeat 444849 444909 108 + . . scaffold794 WUBlastX LINE_L2 444967 445278 60 + . . scaffold794 TRF Tandem_Repeat 446772 446811 80 + . . scaffold794 TRF Tandem_Repeat 447555 447602 51 + . . scaffold794 WUBlastX DNA_TcMar-Pogo 454891 455118 69 - . . scaffold794 TRF Tandem_Repeat 455494 456170 768 + . . scaffold794 GLEAN mRNA 456365 488148 0.784908 - . ID=CGI_10017160; scaffold794 TRF Tandem_Repeat 471601 471950 538 + . . scaffold794 TRF Tandem_Repeat 471601 471950 500 + . . scaffold794 TRF Tandem_Repeat 474120 474156 74 + . . scaffold794 GLEAN promoter 488149 489148 0.784908 - . ID=CGI_10017160; scaffold795 GLEAN mRNA 7657 7923 1 - . ID=CGI_10001306; scaffold795 GLEAN promoter 7924 8923 1 - . ID=CGI_10001306; scaffold795 GLEAN mRNA 8670 17236 1 - . ID=CGI_10001307; scaffold795 GLEAN promoter 17237 18236 1 - . ID=CGI_10001307; scaffold796 TRF Tandem_Repeat 4534 4579 65 + . . scaffold796 TRF Tandem_Repeat 6607 6676 101 + . . scaffold796 TRF Tandem_Repeat 7239 7353 107 + . . scaffold796 TRF Tandem_Repeat 7262 7342 92 + . . scaffold796 TRF Tandem_Repeat 8468 8528 58 + . . scaffold796 TRF Tandem_Repeat 8477 8528 61 + . . scaffold796 TRF Tandem_Repeat 15595 15684 58 + . . scaffold796 TRF Tandem_Repeat 26017 26058 50 + . . scaffold796 TRF Tandem_Repeat 26876 26909 61 + . . scaffold796 WUBlastX LINE_L2 43128 43184 21 - . . scaffold796 WUBlastX RC_Helitron 43737 49610 3651 - . . scaffold796 WUBlastX RC_Helitron 48870 49961 195 - . . scaffold796 WUBlastX RC_Helitron 48927 50150 177 - . . scaffold796 TRF Tandem_Repeat 50746 50799 74 + . . scaffold796 WUBlastX LTR_Gypsy 51235 55605 1707 + . . scaffold796 WUBlastX LTR_Gypsy 52270 55605 1815 + . . scaffold796 WUBlastX LTR_Gypsy 52936 55614 1924 + . . scaffold796 WUBlastX LTR_Gypsy 57035 57259 30 + . . scaffold796 TRF Tandem_Repeat 57877 57914 76 + . . scaffold796 WUBlastX LTR_Gypsy 58165 58545 189 + . . scaffold796 WUBlastX LTR_Gypsy 58559 58642 42 + . . scaffold796 WUBlastX LTR_Gypsy 59140 59430 29 + . . scaffold796 WUBlastX LTR_Gypsy 59278 59340 45 + . . scaffold796 WUBlastX LTR_Gypsy 59310 59429 47 + . . scaffold796 WUBlastX LTR_Gypsy 59340 59438 52 + . . scaffold796 WUBlastX LTR_Gypsy 59396 59545 34 + . . scaffold796 WUBlastX LTR_Gypsy 60496 60627 23 - . . scaffold796 WUBlastX LTR_Gypsy 60535 60726 29 - . . scaffold796 WUBlastX LTR_Gypsy 60583 60726 37 - . . scaffold796 WUBlastX LTR_Gypsy 60634 60762 59 - . . scaffold796 WUBlastX LTR_Gypsy 60699 60833 21 - . . scaffold796 WUBlastX LTR_Gypsy-Cigr 61058 61354 76 - . . scaffold796 WUBlastX LTR_Gypsy 61302 62036 207 - . . scaffold796 WUBlastX LTR_Gypsy 61431 62039 219 - . . scaffold796 WUBlastX LTR_Gypsy 61990 62181 131 - . . scaffold796 WUBlastX LTR_Gypsy 61999 62241 89 - . . scaffold796 WUBlastX LTR_Gypsy 62062 62364 81 - . . scaffold796 WUBlastX LTR_Gypsy 63018 63044 25 - . . scaffold796 GLEAN mRNA 70001 78915 1 - . ID=CGI_10003633; scaffold796 TRF Tandem_Repeat 78120 78163 88 + . . scaffold796 GLEAN promoter 78916 79079 1 - . ID=CGI_10003633; scaffold799 GLEAN mRNA 12719 25817 0.999676 - . ID=CGI_10001643; scaffold799 GLEAN promoter 25818 26817 0.999676 - . ID=CGI_10001643; scaffold799 GLEAN mRNA 26241 27406 1 - . ID=CGI_10001644; scaffold799 GLEAN promoter 27407 28406 1 - . ID=CGI_10001644; scaffold8 WUBlastX LTR_Gypsy-Cigr 118 492 39 + . . scaffold80 TRF Tandem_Repeat 6005 6356 256 + . . scaffold80 TRF Tandem_Repeat 6005 6403 233 + . . scaffold80 TRF Tandem_Repeat 6141 6402 163 + . . scaffold80 WUBlastX LTR_Gypsy-Cigr 9681 10112 107 + . . scaffold80 WUBlastX LTR_Gypsy 9819 10397 74 + . . scaffold80 GLEAN promoter 10025 11024 0.999984 + . ID=CGI_10001548; scaffold80 WUBlastX LTR_Gypsy 10296 10736 46 + . . scaffold80 WUBlastX LTR_Gypsy 10771 10839 32 + . . scaffold80 GLEAN mRNA 11025 11414 0.999984 + . ID=CGI_10001548; scaffold80 WUBlastX LINE_RTE-BovB 15442 15528 54 - . . scaffold80 WUBlastX LINE_RTE-BovB 15542 15628 59 - . . scaffold80 TRF Tandem_Repeat 16971 17090 150 + . . scaffold80 TRF Tandem_Repeat 17300 17459 194 + . . scaffold80 TRF Tandem_Repeat 17458 17670 139 + . . scaffold801 TRF Tandem_Repeat 3933 4107 305 + . . scaffold801 TRF Tandem_Repeat 9635 9732 187 + . . scaffold801 TRF Tandem_Repeat 14787 14834 80 + . . scaffold801 WUBlastX LTR_Ngaro 36863 37702 314 + . . scaffold801 WUBlastX LINE_RTE-X 37860 38321 65 + . . scaffold801 WUBlastX LINE_RTE-X 37950 38264 77 + . . scaffold801 GLEAN mRNA 39560 55866 0.92181 - . ID=CGI_10024059; scaffold801 GLEAN promoter 55783 56782 0.793714 + . ID=CGI_10024060; scaffold801 GLEAN promoter 55867 56866 0.92181 - . ID=CGI_10024059; scaffold801 GLEAN mRNA 56783 69691 0.793714 + . ID=CGI_10024060; scaffold801 TRF Tandem_Repeat 65466 65639 289 + . . scaffold801 GLEAN mRNA 70455 77463 0.481021 - . ID=CGI_10024061; scaffold801 TRF Tandem_Repeat 70774 70800 54 + . . scaffold801 TRF Tandem_Repeat 75056 75320 165 + . . scaffold801 GLEAN promoter 77464 78463 0.481021 - . ID=CGI_10024061; scaffold801 TRF Tandem_Repeat 78907 79011 210 + . . scaffold801 GLEAN mRNA 79800 85187 0.400057 - . ID=CGI_10024062; scaffold801 GLEAN promoter 79933 80932 0.889853 + . ID=CGI_10024063; scaffold801 TRF Tandem_Repeat 80805 80879 150 + . . scaffold801 GLEAN mRNA 80933 88043 0.889853 + . ID=CGI_10024063; scaffold801 TRF Tandem_Repeat 84094 84137 88 + . . scaffold801 GLEAN promoter 85188 86187 0.400057 - . ID=CGI_10024062; scaffold801 TRF Tandem_Repeat 85642 85729 99 + . . scaffold801 WUBlastX DNA_hAT 87356 87670 73 + . . scaffold801 TRF Tandem_Repeat 88939 88979 82 + . . scaffold801 TRF Tandem_Repeat 93516 93569 99 + . . scaffold801 TRF Tandem_Repeat 98253 98287 52 + . . scaffold801 GLEAN promoter 98805 99804 1 + . ID=CGI_10024064; scaffold801 TRF Tandem_Repeat 98815 98876 124 + . . scaffold801 TRF Tandem_Repeat 99583 99619 56 + . . scaffold801 GLEAN mRNA 99805 103731 1 + . ID=CGI_10024064; scaffold801 TRF Tandem_Repeat 100723 101522 1124 + . . scaffold801 WUBlastX DNA_hAT 103021 103335 77 + . . scaffold801 GLEAN mRNA 105257 109600 0.838493 - . ID=CGI_10024065; scaffold801 TRF Tandem_Repeat 109206 109261 112 + . . scaffold801 GLEAN promoter 109601 110600 0.838493 - . ID=CGI_10024065; scaffold801 GLEAN promoter 110503 111502 1 + . ID=CGI_10024066; scaffold801 TRF Tandem_Repeat 110553 110604 104 + . . scaffold801 GLEAN mRNA 111503 126098 1 + . ID=CGI_10024066; scaffold801 TRF Tandem_Repeat 116118 116254 184 + . . scaffold801 TRF Tandem_Repeat 116357 116430 148 + . . scaffold801 TRF Tandem_Repeat 125602 125703 116 + . . scaffold801 TRF Tandem_Repeat 127572 128195 1079 + . . scaffold801 GLEAN mRNA 128374 129600 0.909783 - . ID=CGI_10024067; scaffold801 GLEAN promoter 129601 130600 0.909783 - . ID=CGI_10024067; scaffold801 GLEAN promoter 130966 131965 0.911325 + . ID=CGI_10024068; scaffold801 GLEAN mRNA 131966 134756 0.911325 + . ID=CGI_10024068; scaffold801 GLEAN promoter 135392 136391 0.949635 + . ID=CGI_10024069; scaffold801 GLEAN mRNA 136392 138976 0.949635 + . ID=CGI_10024069; scaffold801 GLEAN promoter 139357 140356 0.999946 + . ID=CGI_10024070; scaffold801 GLEAN mRNA 140357 143602 0.999946 + . ID=CGI_10024070; scaffold801 TRF Tandem_Repeat 145685 145746 70 + . . scaffold801 TRF Tandem_Repeat 145688 145742 74 + . . scaffold801 TRF Tandem_Repeat 145696 145738 68 + . . scaffold801 TRF Tandem_Repeat 145820 146540 1186 + . . scaffold801 WUBlastX LTR_DIRS 146971 147213 37 + . . scaffold801 WUBlastX LTR_DIRS 147406 147477 30 + . . scaffold801 WUBlastX LTR_DIRS 147921 148043 30 + . . scaffold801 WUBlastX LTR_DIRS 147942 148220 110 + . . scaffold801 WUBlastX LTR_DIRS 148402 148773 69 + . . scaffold801 GLEAN promoter 151217 152216 0.836238 + . ID=CGI_10024071; scaffold801 GLEAN mRNA 152217 155117 0.836238 + . ID=CGI_10024071; scaffold801 WUBlastX LTR_DIRS 155770 156012 45 + . . scaffold801 WUBlastX LTR_DIRS 156185 156337 24 + . . scaffold801 WUBlastX LTR_DIRS 156795 157364 67 + . . scaffold801 WUBlastX LTR_DIRS 157830 157883 20 + . . scaffold801 GLEAN promoter 158787 159786 0.999347 + . ID=CGI_10024072; scaffold801 GLEAN mRNA 159787 162668 0.999347 + . ID=CGI_10024072; scaffold801 GLEAN promoter 162915 163914 0.55803 + . ID=CGI_10024073; scaffold801 TRF Tandem_Repeat 163595 163800 412 + . . scaffold801 GLEAN mRNA 163915 166436 0.55803 + . ID=CGI_10024073; scaffold801 TRF Tandem_Repeat 166835 166878 88 + . . scaffold801 GLEAN promoter 168405 169404 1 + . ID=CGI_10024074; scaffold801 GLEAN mRNA 169405 178955 1 + . ID=CGI_10024074; scaffold801 GLEAN promoter 179073 180072 0.951612 + . ID=CGI_10024076; scaffold801 GLEAN mRNA 180073 185840 0.951612 + . ID=CGI_10024076; scaffold801 TRF Tandem_Repeat 185005 185043 69 + . . scaffold801 TRF Tandem_Repeat 186110 186162 106 + . . scaffold801 TRF Tandem_Repeat 187797 187880 89 + . . scaffold801 WUBlastX DNA_TcMar-Pogo 188189 189634 729 + . . scaffold801 GLEAN promoter 196475 197474 0.999415 + . ID=CGI_10024077; scaffold801 GLEAN mRNA 197475 201491 0.999415 + . ID=CGI_10024077; scaffold801 TRF Tandem_Repeat 202878 203054 121 + . . scaffold801 GLEAN promoter 204751 205750 0.998461 + . ID=CGI_10024078; scaffold801 GLEAN mRNA 205751 217656 0.998461 + . ID=CGI_10024078; scaffold801 TRF Tandem_Repeat 216742 217040 508 + . . scaffold801 GLEAN mRNA 219559 232015 0.999983 - . ID=CGI_10024079; scaffold801 GLEAN promoter 232016 233015 0.999983 - . ID=CGI_10024079; scaffold801 TRF Tandem_Repeat 232598 232678 117 + . . scaffold801 TRF Tandem_Repeat 232598 232678 117 + . . scaffold801 TRF Tandem_Repeat 232598 232678 117 + . . scaffold801 GLEAN mRNA 234795 249407 0.888236 - . ID=CGI_10024080; scaffold801 TRF Tandem_Repeat 238834 238933 100 + . . scaffold801 TRF Tandem_Repeat 241042 241114 119 + . . scaffold801 TRF Tandem_Repeat 245022 245269 202 + . . scaffold801 GLEAN promoter 249408 250407 0.888236 - . ID=CGI_10024080; scaffold801 GLEAN promoter 253636 254635 1 + . ID=CGI_10024081; scaffold801 GLEAN mRNA 254636 261570 1 + . ID=CGI_10024081; scaffold801 WUBlastX LINE_RTE-X 262322 262528 21 + . . scaffold801 WUBlastX LINE_RTE-X 262355 262504 41 + . . scaffold801 GLEAN mRNA 264907 277016 0.581073 - . ID=CGI_10024082; scaffold801 TRF Tandem_Repeat 267953 267986 68 + . . scaffold801 WUBlastX LINE_RTE-X 273713 273856 36 - . . scaffold801 WUBlastX LINE_RTE-X 273752 273856 49 - . . scaffold801 WUBlastX LINE_RTE-X 273856 274179 53 - . . scaffold801 WUBlastX LINE_RTE-X 274170 274622 262 - . . scaffold801 GLEAN promoter 277017 278016 0.581073 - . ID=CGI_10024082; scaffold801 TRF Tandem_Repeat 279232 279302 54 + . . scaffold801 TRF Tandem_Repeat 279240 279266 54 + . . scaffold801 TRF Tandem_Repeat 294556 294612 114 + . . scaffold801 TRF Tandem_Repeat 295382 295676 447 + . . scaffold801 GLEAN mRNA 297320 298507 1 - . ID=CGI_10024083; scaffold801 GLEAN promoter 298508 299507 1 - . ID=CGI_10024083; scaffold801 GLEAN mRNA 309046 309603 1 - . ID=CGI_10024084; scaffold801 GLEAN promoter 309604 310603 1 - . ID=CGI_10024084; scaffold801 GLEAN mRNA 320939 333163 0.981965 - . ID=CGI_10024085; scaffold801 TRF Tandem_Repeat 327541 327940 586 + . . scaffold801 GLEAN promoter 333164 334163 0.981965 - . ID=CGI_10024085; scaffold801 TRF Tandem_Repeat 333905 333935 62 + . . scaffold801 GLEAN mRNA 337024 341103 0.651118 - . ID=CGI_10024086; scaffold801 GLEAN promoter 341104 342103 0.651118 - . ID=CGI_10024086; scaffold801 TRF Tandem_Repeat 344174 344219 92 + . . scaffold801 TRF Tandem_Repeat 346204 346247 56 + . . scaffold801 TRF Tandem_Repeat 363571 363652 164 + . . scaffold801 TRF Tandem_Repeat 364380 364427 51 + . . scaffold801 TRF Tandem_Repeat 375165 375728 898 + . . scaffold801 GLEAN mRNA 382870 385070 0.999286 - . ID=CGI_10024087; scaffold801 GLEAN promoter 385071 386070 0.999286 - . ID=CGI_10024087; scaffold801 GLEAN mRNA 385402 392422 0.992668 - . ID=CGI_10024088; scaffold801 TRF Tandem_Repeat 388073 388132 120 + . . scaffold801 GLEAN promoter 392423 393422 0.992668 - . ID=CGI_10024088; scaffold801 TRF Tandem_Repeat 394141 394192 104 + . . scaffold801 TRF Tandem_Repeat 397948 397985 76 + . . scaffold801 TRF Tandem_Repeat 403109 403160 104 + . . scaffold801 TRF Tandem_Repeat 409111 409170 120 + . . scaffold801 TRF Tandem_Repeat 412105 412160 69 + . . scaffold801 GLEAN mRNA 413846 414133 0.618241 - . ID=CGI_10024089; scaffold801 GLEAN promoter 414134 415133 0.618241 - . ID=CGI_10024089; scaffold801 GLEAN mRNA 416042 416224 0.999372 - . ID=CGI_10024090; scaffold801 GLEAN promoter 416225 417224 0.999372 - . ID=CGI_10024090; scaffold801 TRF Tandem_Repeat 417882 417951 140 + . . scaffold801 GLEAN mRNA 438277 442345 0.59316 - . ID=CGI_10024091; scaffold801 GLEAN promoter 442346 443345 0.59316 - . ID=CGI_10024091; scaffold801 WUBlastX DNA_Sola 451157 451261 44 + . . scaffold801 WUBlastX DNA_Sola 451318 452109 73 + . . scaffold801 WUBlastX DNA_Sola 451678 452289 114 + . . scaffold801 WUBlastX DNA_Sola 451687 452109 144 + . . scaffold801 WUBlastX DNA_Sola 452127 452378 55 + . . scaffold801 WUBlastX DNA_NOF 466568 467152 75 - . . scaffold801 TRF Tandem_Repeat 475081 475135 110 + . . scaffold801 TRF Tandem_Repeat 479798 479859 124 + . . scaffold801 GLEAN mRNA 490785 491279 1 - . ID=CGI_10024092; scaffold801 GLEAN promoter 491280 492279 1 - . ID=CGI_10024092; scaffold801 TRF Tandem_Repeat 530322 530350 58 + . . scaffold801 TRF Tandem_Repeat 539569 540089 352 + . . scaffold801 TRF Tandem_Repeat 539574 540089 342 + . . scaffold801 TRF Tandem_Repeat 539574 540073 273 + . . scaffold801 WUBlastX LINE_RTE-BovB 540885 541301 69 + . . scaffold801 WUBlastX LINE_L1-Tx1 540960 541319 221 + . . scaffold801 WUBlastX LINE_L1-Tx1 541306 541887 188 + . . scaffold801 WUBlastX LINE_L1-Tx1 541779 542324 80 + . . scaffold801 WUBlastX LINE_L1-Tx1 542433 542987 70 + . . scaffold801 WUBlastX DNA_hAT-hATw 544145 544198 22 - . . scaffold801 WUBlastX DNA_hAT-hATw 544439 544705 21 - . . scaffold801 WUBlastX DNA_hAT-hATw 544630 545235 221 - . . scaffold801 WUBlastX DNA_hAT-hATw 545930 546130 32 - . . scaffold801 WUBlastX DNA_hAT-hATw 545933 546064 47 - . . scaffold801 WUBlastX DNA_hAT-hATw 546097 546192 36 - . . scaffold801 WUBlastX DNA_IS4EU 547779 548162 121 + . . scaffold801 WUBlastX DNA_IS4EU 548158 548550 269 + . . scaffold801 TRF Tandem_Repeat 556753 557660 1142 + . . scaffold801 WUBlastX DNA_P 560396 560494 26 - . . scaffold801 WUBlastX DNA_P 561210 561362 55 - . . scaffold801 WUBlastX DNA_P 561237 561362 60 - . . scaffold801 WUBlastX DNA_P 561565 561663 26 - . . scaffold801 WUBlastX DNA_P 561896 561994 20 - . . scaffold801 WUBlastX DNA_P 562130 562276 74 - . . scaffold801 WUBlastX DNA_P 562335 562526 37 - . . scaffold801 WUBlastX DNA_P 562380 562526 47 - . . scaffold801 WUBlastX DNA_P 562380 562481 51 - . . scaffold801 WUBlastX DNA_P 562438 562587 44 - . . scaffold801 WUBlastX DNA_P 562690 562905 31 - . . scaffold801 WUBlastX DNA_P 562747 562905 80 - . . scaffold801 WUBlastX DNA_P 564009 564167 65 - . . scaffold801 WUBlastX DNA_hAT-Tip100 567680 567940 33 + . . scaffold801 WUBlastX LTR_Ngaro 569140 569970 60 - . . scaffold801 WUBlastX LTR_Ngaro 569272 569886 229 - . . scaffold801 WUBlastX LTR_Ngaro 569907 570557 354 - . . scaffold801 WUBlastX LTR_Ngaro 570554 571522 630 - . . scaffold801 WUBlastX LTR_Ngaro 571620 572129 77 - . . scaffold801 WUBlastX LTR_Ngaro 571764 572453 161 - . . scaffold801 WUBlastX LTR_Ngaro 615616 615948 94 - . . scaffold801 WUBlastX LTR_DIRS 615935 616267 76 - . . scaffold801 WUBlastX LTR_Ngaro 615980 616237 152 - . . scaffold801 WUBlastX LTR_Ngaro 616306 617175 595 - . . scaffold801 WUBlastX LTR_Ngaro 618066 618335 74 - . . scaffold801 WUBlastX LTR_Ngaro 618123 618356 95 - . . scaffold801 WUBlastX LTR_Ngaro 618370 619143 73 - . . scaffold801 WUBlastX LTR_Ngaro 618370 619026 122 - . . scaffold801 WUBlastX LTR_Ngaro 618370 618768 129 - . . scaffold801 GLEAN mRNA 629688 677591 0.460193 - . ID=CGI_10024093; scaffold801 WUBlastX DNA_TcMar-Marin 633027 633287 31 + . . scaffold801 WUBlastX DNA_TcMar-Tc1 633081 633446 133 + . . scaffold801 WUBlastX DNA_TcMar-Tc1 633141 633446 164 + . . scaffold801 WUBlastX LINE_RTE-X 638252 638470 98 + . . scaffold801 WUBlastX LINE_RTE-X 638252 638422 99 + . . scaffold801 WUBlastX LINE_RTE-X 638252 638563 82 + . . scaffold801 GLEAN promoter 655963 656962 0.999054 + . ID=CGI_10024094; scaffold801 GLEAN mRNA 656963 677666 0.999054 + . ID=CGI_10024094; scaffold801 GLEAN promoter 677592 678591 0.460193 - . ID=CGI_10024093; scaffold801 TRF Tandem_Repeat 680234 680286 106 + . . scaffold801 GLEAN promoter 680445 681444 1 + . ID=CGI_10024095; scaffold801 GLEAN mRNA 681445 685765 1 + . ID=CGI_10024095; scaffold801 TRF Tandem_Repeat 683749 683796 53 + . . scaffold801 TRF Tandem_Repeat 688031 688134 74 + . . scaffold801 GLEAN promoter 716323 717322 1 + . ID=CGI_10024096; scaffold801 GLEAN mRNA 717323 721455 1 + . ID=CGI_10024096; scaffold801 WUBlastX DNA_Crypton 726398 726799 67 - . . scaffold801 WUBlastX DNA_Crypton 726551 726898 66 - . . scaffold801 WUBlastX DNA_Crypton 727450 727587 25 - . . scaffold801 TRF Tandem_Repeat 733642 733691 100 + . . scaffold801 TRF Tandem_Repeat 734245 734270 52 + . . scaffold801 TRF Tandem_Repeat 740005 740058 74 + . . scaffold801 TRF Tandem_Repeat 741885 741943 118 + . . scaffold801 TRF Tandem_Repeat 742314 742364 59 + . . scaffold801 GLEAN promoter 742896 743895 0.702383 + . ID=CGI_10024098; scaffold801 TRF Tandem_Repeat 743245 743293 53 + . . scaffold801 GLEAN mRNA 743896 759050 0.702383 + . ID=CGI_10024098; scaffold801 TRF Tandem_Repeat 749221 749737 872 + . . scaffold801 TRF Tandem_Repeat 767005 768948 3166 + . . scaffold801 TRF Tandem_Repeat 773208 773250 86 + . . scaffold801 TRF Tandem_Repeat 774313 774353 82 + . . scaffold801 GLEAN promoter 780166 781165 0.999992 + . ID=CGI_10024099; scaffold801 TRF Tandem_Repeat 780200 780266 71 + . . scaffold801 TRF Tandem_Repeat 780785 780837 97 + . . scaffold801 GLEAN mRNA 781166 791340 0.999992 + . ID=CGI_10024099; scaffold801 TRF Tandem_Repeat 795919 796802 799 + . . scaffold801 TRF Tandem_Repeat 797329 797384 112 + . . scaffold801 TRF Tandem_Repeat 812623 812678 58 + . . scaffold801 TRF Tandem_Repeat 812632 812679 60 + . . scaffold801 TRF Tandem_Repeat 815895 816848 1191 + . . scaffold801 TRF Tandem_Repeat 833561 833602 50 + . . scaffold801 WUBlastX LTR_Gypsy-Cigr 840131 840274 88 - . . scaffold801 WUBlastX LTR_Gypsy 840286 841185 113 - . . scaffold801 WUBlastX LTR_Gypsy 840892 841263 54 - . . scaffold801 WUBlastX LTR_Gypsy-Cigr 841488 842135 33 - . . scaffold801 WUBlastX LTR_Gypsy 841791 842144 78 - . . scaffold801 WUBlastX LTR_Gypsy 841860 842198 41 - . . scaffold801 TRF Tandem_Repeat 845550 845670 109 + . . scaffold801 WUBlastX LTR_Ngaro 847389 847586 78 - . . scaffold801 WUBlastX LTR_Ngaro 847389 847655 74 - . . scaffold801 TRF Tandem_Repeat 849784 849812 58 + . . scaffold801 TRF Tandem_Repeat 856673 856730 116 + . . scaffold801 TRF Tandem_Repeat 866047 866086 80 + . . scaffold801 TRF Tandem_Repeat 869588 869669 110 + . . scaffold801 TRF Tandem_Repeat 870742 870781 80 + . . scaffold801 TRF Tandem_Repeat 873822 873852 62 + . . scaffold801 GLEAN promoter 874196 875195 1 + . ID=CGI_10024100; scaffold801 GLEAN mRNA 875196 893586 1 + . ID=CGI_10024100; scaffold801 TRF Tandem_Repeat 890963 890996 59 + . . scaffold801 TRF Tandem_Repeat 897043 897070 56 + . . scaffold801 TRF Tandem_Repeat 897549 897625 127 + . . scaffold802 WUBlastX LTR_Gypsy 3364 3702 89 + . . scaffold802 GLEAN mRNA 5743 8732 0.999998 - . ID=CGI_10015724; scaffold802 WUBlastX DNA_Sola 5827 6312 35 - . . scaffold802 WUBlastX DNA_Sola 6484 6651 66 - . . scaffold802 GLEAN promoter 8733 9732 0.999998 - . ID=CGI_10015724; scaffold802 TRF Tandem_Repeat 11701 12820 1382 + . . scaffold802 TRF Tandem_Repeat 20145 20193 98 + . . scaffold802 WUBlastX DNA_PiggyBac 29362 29685 51 - . . scaffold802 WUBlastX DNA_PiggyBac 29720 29875 25 - . . scaffold802 WUBlastX DNA_PiggyBac 29842 30165 34 - . . scaffold802 WUBlastX DNA_PiggyBac 29929 30165 78 - . . scaffold802 WUBlastX DNA_PiggyBac 29959 30150 120 - . . scaffold802 WUBlastX DNA_PiggyBac 30499 30669 55 - . . scaffold802 WUBlastX DNA_PiggyBac 30559 30669 63 - . . scaffold802 WUBlastX DNA_PiggyBac 31261 31443 84 - . . scaffold802 WUBlastX DNA_PiggyBac 31850 31999 39 - . . scaffold802 WUBlastX DNA_PiggyBac 31850 31951 48 - . . scaffold802 WUBlastX DNA_PiggyBac 32406 32528 79 - . . scaffold802 WUBlastX DNA_PiggyBac 32433 32657 114 - . . scaffold802 WUBlastX DNA_PiggyBac 32433 32714 106 - . . scaffold802 WUBlastX DNA_PiggyBac 32433 32813 88 - . . scaffold802 TRF Tandem_Repeat 34876 34909 50 + . . scaffold802 GLEAN promoter 62413 63412 1 + . ID=CGI_10015725; scaffold802 GLEAN mRNA 63413 66371 1 + . ID=CGI_10015725; scaffold802 TRF Tandem_Repeat 75833 77459 2013 + . . scaffold802 TRF Tandem_Repeat 75833 77459 1966 + . . scaffold802 TRF Tandem_Repeat 79230 79294 67 + . . scaffold802 TRF Tandem_Repeat 79289 79385 95 + . . scaffold802 TRF Tandem_Repeat 83952 84009 116 + . . scaffold802 TRF Tandem_Repeat 88361 88431 142 + . . scaffold802 TRF Tandem_Repeat 92774 92844 70 + . . scaffold802 TRF Tandem_Repeat 100513 100545 66 + . . scaffold802 GLEAN promoter 106008 107007 0.996366 + . ID=CGI_10015726; scaffold802 GLEAN mRNA 107008 130874 0.996366 + . ID=CGI_10015726; scaffold802 TRF Tandem_Repeat 131383 131420 76 + . . scaffold802 GLEAN mRNA 137512 196873 0.499283 - . ID=CGI_10015727; scaffold802 TRF Tandem_Repeat 140623 140663 82 + . . scaffold802 WUBlastX LINE_L1-Tx1 141020 141229 37 + . . scaffold802 WUBlastX LINE_L1 141128 141259 42 + . . scaffold802 WUBlastX LINE_L1-Tx1 141216 141674 81 + . . scaffold802 WUBlastX LINE_L1-Tx1 141234 141470 116 + . . scaffold802 WUBlastX LINE_L1-Tx1 141255 141602 92 + . . scaffold802 TRF Tandem_Repeat 141836 141873 69 + . . scaffold802 TRF Tandem_Repeat 153706 153772 80 + . . scaffold802 TRF Tandem_Repeat 169578 169626 98 + . . scaffold802 TRF Tandem_Repeat 190613 190655 59 + . . scaffold802 TRF Tandem_Repeat 191905 191958 54 + . . scaffold802 GLEAN promoter 196874 197873 0.499283 - . ID=CGI_10015727; scaffold802 TRF Tandem_Repeat 198310 198337 56 + . . scaffold802 TRF Tandem_Repeat 200766 200809 70 + . . scaffold802 GLEAN mRNA 207862 218548 0.487761 - . ID=CGI_10015728; scaffold802 TRF Tandem_Repeat 209340 209383 52 + . . scaffold802 TRF Tandem_Repeat 209795 209834 53 + . . scaffold802 GLEAN promoter 218549 219548 0.487761 - . ID=CGI_10015728; scaffold802 TRF Tandem_Repeat 225215 226463 1790 + . . scaffold802 TRF Tandem_Repeat 227682 227727 57 + . . scaffold802 TRF Tandem_Repeat 227685 227726 50 + . . scaffold802 GLEAN mRNA 228542 309723 0.288686 - . ID=CGI_10015729; scaffold802 TRF Tandem_Repeat 291877 291963 126 + . . scaffold802 TRF Tandem_Repeat 306438 306473 63 + . . scaffold802 GLEAN promoter 309724 310723 0.288686 - . ID=CGI_10015729; scaffold802 GLEAN mRNA 311160 311450 0.486652 - . ID=CGI_10015730; scaffold802 GLEAN promoter 311451 312450 0.486652 - . ID=CGI_10015730; scaffold802 GLEAN promoter 311685 312684 0.777738 + . ID=CGI_10015731; scaffold802 GLEAN mRNA 312685 315713 0.777738 + . ID=CGI_10015731; scaffold802 GLEAN promoter 314836 315835 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 315105 315157 106 + . . scaffold802 GLEAN mRNA 315836 353327 0.99992 + . ID=CGI_10015732; scaffold802 TRF Tandem_Repeat 319098 319127 51 + . . scaffold802 TRF Tandem_Repeat 319748 319772 50 + . . scaffold802 TRF Tandem_Repeat 319866 319896 53 + . . scaffold802 TRF Tandem_Repeat 319929 320345 521 + . . scaffold802 TRF Tandem_Repeat 320661 320769 69 + . . scaffold802 TRF Tandem_Repeat 320973 321085 86 + . . scaffold802 TRF Tandem_Repeat 320973 321093 127 + . . scaffold802 TRF Tandem_Repeat 320973 321055 87 + . . scaffold802 GLEAN mRNA 326052 327026 0.785371 - . ID=CGI_10015733; scaffold802 GLEAN promoter 327027 328026 0.785371 - . ID=CGI_10015733; scaffold802 TRF Tandem_Repeat 352700 352729 60 + . . scaffold802 WUBlastX DNA_TcMar-Tc1 354048 354242 30 + . . scaffold802 WUBlastX DNA_TcMar-Tc1 354242 354352 89 + . . scaffold802 WUBlastX DNA_TcMar-Tc1 354331 354684 143 + . . scaffold802 GLEAN mRNA 359299 378108 1 - . ID=CGI_10015734; scaffold802 TRF Tandem_Repeat 364322 364607 428 + . . scaffold802 TRF Tandem_Repeat 364325 364593 313 + . . scaffold802 TRF Tandem_Repeat 364620 364809 143 + . . scaffold802 TRF Tandem_Repeat 364620 364807 223 + . . scaffold802 TRF Tandem_Repeat 364894 364980 113 + . . scaffold802 GLEAN promoter 378109 379108 1 - . ID=CGI_10015734; scaffold802 TRF Tandem_Repeat 383597 384573 864 + . . scaffold802 TRF Tandem_Repeat 388102 388147 57 + . . scaffold802 TRF Tandem_Repeat 388105 388146 50 + . . scaffold802 TRF Tandem_Repeat 390772 391447 522 + . . scaffold802 GLEAN promoter 401697 402696 0.586574 + . ID=CGI_10015735; scaffold802 TRF Tandem_Repeat 402371 402396 52 + . . scaffold802 GLEAN mRNA 402697 404202 0.586574 + . ID=CGI_10015735; scaffold802 WUBlastX LINE_L1 402823 403269 30 + . . scaffold802 TRF Tandem_Repeat 406783 406811 58 + . . scaffold802 TRF Tandem_Repeat 408831 408884 108 + . . scaffold802 TRF Tandem_Repeat 413993 414086 134 + . . scaffold802 TRF Tandem_Repeat 418342 419033 717 + . . scaffold802 GLEAN mRNA 421944 434478 0.999949 - . ID=CGI_10015736; scaffold802 TRF Tandem_Repeat 427734 427782 98 + . . scaffold802 GLEAN promoter 434479 435478 0.999949 - . ID=CGI_10015736; scaffold802 TRF Tandem_Repeat 436512 436559 69 + . . scaffold802 TRF Tandem_Repeat 436589 436618 51 + . . scaffold802 WUBlastX LINE_RTE-X 437489 437899 87 - . . scaffold802 WUBlastX LINE_RTE-X 437489 437830 129 - . . scaffold802 WUBlastX LINE_RTE-X 437799 438056 33 - . . scaffold802 WUBlastX LINE_RTE-X 438013 438102 33 - . . scaffold802 WUBlastX LINE_RTE-X 440371 441387 87 + . . scaffold804 TRF Tandem_Repeat 25889 25942 99 + . . scaffold804 WUBlastX DNA_Harbinger 30259 30396 63 - . . scaffold804 WUBlastX DNA_Harbinger 30384 30521 70 - . . scaffold804 WUBlastX DNA_Harbinger 30432 30533 79 - . . scaffold804 WUBlastX DNA_Harbinger 30523 30825 67 - . . scaffold804 TRF Tandem_Repeat 45279 45416 109 + . . scaffold804 TRF Tandem_Repeat 45529 45587 111 + . . scaffold804 TRF Tandem_Repeat 47281 47349 138 + . . scaffold804 GLEAN promoter 52319 53318 1 + . ID=CGI_10014853; scaffold804 GLEAN mRNA 53319 53781 1 + . ID=CGI_10014853; scaffold804 GLEAN promoter 54886 55885 1 + . ID=CGI_10014854; scaffold804 GLEAN mRNA 55886 56581 1 + . ID=CGI_10014854; scaffold804 GLEAN promoter 69294 70293 0.999953 + . ID=CGI_10014855; scaffold804 GLEAN mRNA 70294 83402 0.999953 + . ID=CGI_10014855; scaffold804 WUBlastX LTR_DIRS 118297 118569 74 - . . scaffold804 WUBlastX LTR_DIRS 118336 118632 37 - . . scaffold804 WUBlastX LTR_Gypsy 118715 119053 74 - . . scaffold804 WUBlastX DNA_Harbinger 139666 139890 46 - . . scaffold804 GLEAN mRNA 160406 170673 0.986312 - . ID=CGI_10014856; scaffold804 WUBlastX DNA_IS4EU 162078 162572 32 + . . scaffold804 WUBlastX DNA_IS4EU 162168 162440 76 + . . scaffold804 TRF Tandem_Repeat 164439 164503 85 + . . scaffold804 TRF Tandem_Repeat 164444 164502 82 + . . scaffold804 TRF Tandem_Repeat 164448 164503 67 + . . scaffold804 WUBlastX LTR_Gypsy 166121 166156 28 - . . scaffold804 WUBlastX LTR_Gypsy-Cigr 166230 166892 298 - . . scaffold804 WUBlastX LTR_Gypsy 166894 167334 348 - . . scaffold804 WUBlastX LTR_Gypsy 167352 167408 23 - . . scaffold804 WUBlastX LTR_Gypsy 167367 167933 296 - . . scaffold804 WUBlastX LTR_Gypsy-Cigr 167923 169386 811 - . . scaffold804 WUBlastX LTR_Gypsy 167932 169701 756 - . . scaffold804 WUBlastX LTR_Gypsy 169285 169914 158 - . . scaffold804 WUBlastX LTR_Gypsy 169414 170139 90 - . . scaffold804 WUBlastX LTR_Gypsy-Cigr 170037 170303 68 - . . scaffold804 GLEAN promoter 170131 171130 0.935885 + . ID=CGI_10014858; scaffold804 GLEAN promoter 170674 171673 0.986312 - . ID=CGI_10014856; scaffold804 GLEAN mRNA 170678 170872 0.99937 - . ID=CGI_10014857; scaffold804 GLEAN promoter 170873 171872 0.99937 - . ID=CGI_10014857; scaffold804 GLEAN mRNA 171131 181585 0.935885 + . ID=CGI_10014858; scaffold804 TRF Tandem_Repeat 173420 173465 92 + . . scaffold804 WUBlastX LTR_Gypsy 178391 178666 43 - . . scaffold804 WUBlastX LTR_Gypsy 178693 178851 54 - . . scaffold804 WUBlastX LTR_Gypsy 178849 178965 33 - . . scaffold804 WUBlastX LTR_Gypsy 178891 178998 24 - . . scaffold804 WUBlastX LTR_Gypsy 179003 180130 373 - . . scaffold804 WUBlastX LTR_Gypsy 179544 180275 115 - . . scaffold804 TRF Tandem_Repeat 187839 187890 59 + . . scaffold804 TRF Tandem_Repeat 226218 226335 69 + . . scaffold804 TRF Tandem_Repeat 231320 232350 1342 + . . scaffold804 TRF Tandem_Repeat 236637 236703 80 + . . scaffold804 TRF Tandem_Repeat 240348 240407 66 + . . scaffold804 WUBlastX LINE_L1-Tx1 241963 245478 1252 - . . scaffold804 GLEAN mRNA 245572 246096 0.649524 - . ID=CGI_10014859; scaffold804 GLEAN promoter 246097 247096 0.649524 - . ID=CGI_10014859; scaffold804 WUBlastX LINE_CR1 246169 246885 184 - . . scaffold804 TRF Tandem_Repeat 248766 248810 65 + . . scaffold804 GLEAN promoter 249594 250593 1 + . ID=CGI_10014860; scaffold804 GLEAN mRNA 250594 252969 1 + . ID=CGI_10014860; scaffold804 GLEAN promoter 253876 254875 0.988577 + . ID=CGI_10014861; scaffold804 GLEAN mRNA 254876 263787 0.988577 + . ID=CGI_10014861; scaffold804 GLEAN mRNA 264196 277860 0.920383 - . ID=CGI_10014862; scaffold804 TRF Tandem_Repeat 272807 272844 58 + . . scaffold804 GLEAN promoter 277861 278860 0.920383 - . ID=CGI_10014862; scaffold804 TRF Tandem_Repeat 278117 278162 92 + . . scaffold804 TRF Tandem_Repeat 288708 288767 120 + . . scaffold804 WUBlastX LINE_RTE-X 292051 292515 129 - . . scaffold804 WUBlastX LINE_RTE-X 293479 293736 21 - . . scaffold804 WUBlastX LINE_Jockey 293608 293718 34 - . . scaffold804 WUBlastX LINE_RTE-X 293674 293766 43 - . . scaffold804 WUBlastX LINE_RTE-X 293674 293736 44 - . . scaffold804 WUBlastX LINE_RTE-X 294355 294561 42 - . . scaffold804 WUBlastX LINE_RTE-X 294388 294774 91 - . . scaffold804 WUBlastX LINE_R2 298714 299466 24 + . . scaffold804 WUBlastX LINE_RTE-X 298834 299853 218 + . . scaffold804 WUBlastX LINE_RTE-X 298969 300054 47 + . . scaffold804 TRF Tandem_Repeat 300690 300717 56 + . . scaffold804 WUBlastX LTR_Pao 303027 304163 543 - . . scaffold804 WUBlastX LTR_Pao 303204 304151 594 - . . scaffold804 TRF Tandem_Repeat 316305 316404 155 + . . scaffold804 TRF Tandem_Repeat 318225 318281 114 + . . scaffold804 GLEAN promoter 323116 324115 0.415966 + . ID=CGI_10014863; scaffold804 GLEAN mRNA 324116 325737 0.415966 + . ID=CGI_10014863; scaffold804 TRF Tandem_Repeat 328069 328310 187 + . . scaffold804 TRF Tandem_Repeat 328149 328295 107 + . . scaffold804 TRF Tandem_Repeat 328548 328575 56 + . . scaffold804 TRF Tandem_Repeat 330179 331461 1813 + . . scaffold804 TRF Tandem_Repeat 330663 331461 1223 + . . scaffold804 WUBlastX LTR_Gypsy 336596 337423 208 + . . scaffold804 WUBlastX LTR_Gypsy 337289 337549 40 + . . scaffold804 TRF Tandem_Repeat 337862 337909 60 + . . scaffold804 TRF Tandem_Repeat 338137 338905 1002 + . . scaffold804 WUBlastX LINE_L2 345129 345275 34 - . . scaffold804 WUBlastX LINE_L2 345254 345331 29 - . . scaffold804 WUBlastX DNA_hAT-hATw 345899 346036 26 + . . scaffold804 WUBlastX DNA_hAT-hATw 346185 348044 630 + . . scaffold804 TRF Tandem_Repeat 352738 352839 125 + . . scaffold804 TRF Tandem_Repeat 366557 366651 91 + . . scaffold804 TRF Tandem_Repeat 377725 377775 102 + . . scaffold804 GLEAN mRNA 380158 389677 1 - . ID=CGI_10014864; scaffold804 TRF Tandem_Repeat 385775 385831 114 + . . scaffold804 GLEAN promoter 389678 390677 1 - . ID=CGI_10014864; scaffold804 TRF Tandem_Repeat 401407 401453 94 + . . scaffold804 TRF Tandem_Repeat 413145 413170 52 + . . scaffold805 GLEAN promoter 21610 22609 0.528461 + . ID=CGI_10001590; scaffold805 GLEAN mRNA 22610 23953 0.528461 + . ID=CGI_10001590; scaffold806 GLEAN promoter 5658 6657 0.934338 + . ID=CGI_10004919; scaffold806 GLEAN mRNA 6658 18169 0.934338 + . ID=CGI_10004919; scaffold806 WUBlastX LTR_DIRS 14191 14757 112 + . . scaffold806 WUBlastX LTR_DIRS 14221 14901 86 + . . scaffold806 WUBlastX LTR_DIRS 15035 15451 63 + . . scaffold806 TRF Tandem_Repeat 20685 20727 86 + . . scaffold806 TRF Tandem_Repeat 21045 21113 129 + . . scaffold806 TRF Tandem_Repeat 22068 22125 107 + . . scaffold806 TRF Tandem_Repeat 27179 27222 88 + . . scaffold806 TRF Tandem_Repeat 27981 28016 72 + . . scaffold806 GLEAN promoter 44927 45926 0.999999 + . ID=CGI_10004920; scaffold806 GLEAN mRNA 45927 47657 0.999999 + . ID=CGI_10004920; scaffold806 GLEAN promoter 50895 51894 0.99961 + . ID=CGI_10004921; scaffold806 GLEAN mRNA 51895 55638 0.99961 + . ID=CGI_10004921; scaffold806 TRF Tandem_Repeat 53767 53802 72 + . . scaffold806 TRF Tandem_Repeat 53880 53913 68 + . . scaffold806 TRF Tandem_Repeat 55391 55456 123 + . . scaffold806 TRF Tandem_Repeat 58210 58375 121 + . . scaffold806 TRF Tandem_Repeat 58420 58913 543 + . . scaffold806 GLEAN mRNA 61844 62242 0.976419 - . ID=CGI_10004922; scaffold806 GLEAN promoter 62243 63242 0.976419 - . ID=CGI_10004922; scaffold806 TRF Tandem_Repeat 63012 63087 136 + . . scaffold806 TRF Tandem_Repeat 66962 67032 133 + . . scaffold806 GLEAN promoter 70420 71419 0.999606 + . ID=CGI_10004923; scaffold806 GLEAN mRNA 71420 87263 0.999606 + . ID=CGI_10004923; scaffold806 TRF Tandem_Repeat 74344 74398 110 + . . scaffold806 TRF Tandem_Repeat 78428 78494 116 + . . scaffold806 TRF Tandem_Repeat 80016 81064 1035 + . . scaffold806 TRF Tandem_Repeat 80017 81064 926 + . . scaffold806 TRF Tandem_Repeat 80022 81064 1160 + . . scaffold806 TRF Tandem_Repeat 80022 81064 850 + . . scaffold806 TRF Tandem_Repeat 82018 82115 178 + . . scaffold806 TRF Tandem_Repeat 84683 85718 1365 + . . scaffold806 GLEAN promoter 91077 92076 0.558383 + . ID=CGI_10004924; scaffold806 GLEAN mRNA 92077 94210 0.558383 + . ID=CGI_10004924; scaffold806 GLEAN promoter 95930 96929 1 + . ID=CGI_10004925; scaffold806 GLEAN mRNA 96930 114212 1 + . ID=CGI_10004925; scaffold806 TRF Tandem_Repeat 107637 107768 130 + . . scaffold806 TRF Tandem_Repeat 109695 109952 457 + . . scaffold806 TRF Tandem_Repeat 112351 112975 685 + . . scaffold807 TRF Tandem_Repeat 43 217 278 + . . scaffold807 WUBlastX DNA_Crypton 1305 1529 56 + . . scaffold807 WUBlastX LTR_Gypsy 3020 3643 93 + . . scaffold807 WUBlastX LTR_Gypsy 3299 3643 99 + . . scaffold807 WUBlastX LTR_Gypsy 3344 3604 115 + . . scaffold807 WUBlastX LTR_Gypsy 3706 3882 20 + . . scaffold807 WUBlastX LTR_Gypsy 4208 4597 61 + . . scaffold807 WUBlastX LTR_Gypsy 4241 4795 39 + . . scaffold807 WUBlastX LTR_Gypsy 4274 4621 94 + . . scaffold807 WUBlastX LTR_Gypsy 4837 5379 269 + . . scaffold807 WUBlastX LTR_Gypsy 4885 5550 234 + . . scaffold807 WUBlastX LTR_Gypsy 5477 5680 160 + . . scaffold807 WUBlastX LTR_Gypsy 5682 7250 948 + . . scaffold807 WUBlastX LTR_Gypsy 7606 7692 26 + . . scaffold807 TRF Tandem_Repeat 10779 10832 92 + . . scaffold807 TRF Tandem_Repeat 11735 11790 51 + . . scaffold807 TRF Tandem_Repeat 12309 12442 232 + . . scaffold807 TRF Tandem_Repeat 17190 17215 52 + . . scaffold807 GLEAN promoter 28655 29654 0.999981 + . ID=CGI_10011454; scaffold807 GLEAN mRNA 29655 50070 0.999981 + . ID=CGI_10011454; scaffold807 WUBlastX LINE_Penelope 50220 50531 37 + . . scaffold807 WUBlastX LINE_Penelope 50274 50606 105 + . . scaffold807 TRF Tandem_Repeat 50978 51043 69 + . . scaffold807 GLEAN mRNA 52699 59209 0.733535 - . ID=CGI_10011455; scaffold807 GLEAN promoter 59210 60209 0.733535 - . ID=CGI_10011455; scaffold807 TRF Tandem_Repeat 63017 63069 70 + . . scaffold807 WUBlastX LTR_Gypsy 65535 65870 85 + . . scaffold807 WUBlastX LTR_Gypsy 65577 65930 84 + . . scaffold807 WUBlastX LTR_Gypsy 65592 66044 63 + . . scaffold807 WUBlastX LTR_Gypsy 65835 66284 21 + . . scaffold807 WUBlastX LTR_Gypsy 66308 66883 110 + . . scaffold807 TRF Tandem_Repeat 69031 69097 125 + . . scaffold807 TRF Tandem_Repeat 69479 69528 84 + . . scaffold807 TRF Tandem_Repeat 72458 73217 732 + . . scaffold807 TRF Tandem_Repeat 72532 73200 480 + . . scaffold807 GLEAN mRNA 89667 111642 0.966284 - . ID=CGI_10011456; scaffold807 TRF Tandem_Repeat 100023 101388 1765 + . . scaffold807 TRF Tandem_Repeat 100023 101388 1768 + . . scaffold807 WUBlastX DNA_hAT 107704 107946 76 + . . scaffold807 GLEAN promoter 111643 112642 0.966284 - . ID=CGI_10011456; scaffold807 GLEAN mRNA 113299 155307 0.991249 - . ID=CGI_10011457; scaffold807 TRF Tandem_Repeat 120499 120568 53 + . . scaffold807 TRF Tandem_Repeat 122913 122960 64 + . . scaffold807 TRF Tandem_Repeat 128215 128280 89 + . . scaffold807 TRF Tandem_Repeat 146475 146504 51 + . . scaffold807 TRF Tandem_Repeat 147095 147153 75 + . . scaffold807 TRF Tandem_Repeat 147095 147153 75 + . . scaffold807 GLEAN promoter 155308 156307 0.991249 - . ID=CGI_10011457; scaffold807 WUBlastX LINE_L1-Tx1 159480 160082 366 + . . scaffold807 GLEAN promoter 163808 164807 0.351868 + . ID=CGI_10011458; scaffold807 WUBlastX LTR_DIRS 164171 164512 109 + . . scaffold807 WUBlastX LTR_DIRS 164720 164914 68 + . . scaffold807 GLEAN mRNA 164808 174139 0.351868 + . ID=CGI_10011458; scaffold807 TRF Tandem_Repeat 169216 169263 96 + . . scaffold807 TRF Tandem_Repeat 173133 173162 60 + . . scaffold807 WUBlastX LINE_L2 174978 176045 459 - . . scaffold807 WUBlastX LINE_CR1-L2 175975 177228 660 - . . scaffold807 WUBlastX LINE_L2 176206 177411 267 - . . scaffold807 WUBlastX LINE_L2 177778 178488 306 - . . scaffold807 WUBlastX LINE_L2 178499 180631 819 - . . scaffold807 WUBlastX LINE_Rex-Babar 179588 180874 33 - . . scaffold807 TRF Tandem_Repeat 186091 186140 100 + . . scaffold807 GLEAN promoter 191941 192940 0.985754 + . ID=CGI_10011459; scaffold807 TRF Tandem_Repeat 192338 192390 106 + . . scaffold807 GLEAN mRNA 192941 193270 0.985754 + . ID=CGI_10011459; scaffold807 TRF Tandem_Repeat 196468 196506 62 + . . scaffold807 TRF Tandem_Repeat 204278 204310 66 + . . scaffold807 GLEAN promoter 204986 205985 0.997182 + . ID=CGI_10011460; scaffold807 TRF Tandem_Repeat 205731 205765 70 + . . scaffold807 GLEAN mRNA 205986 207269 0.997182 + . ID=CGI_10011460; scaffold807 WUBlastX DNA_TcMar-Fot1 209729 209851 40 + . . scaffold807 WUBlastX DNA_TcMar-Fot1 209836 210153 81 + . . scaffold807 WUBlastX DNA_TcMar-Fot1 211113 211268 59 + . . scaffold807 WUBlastX DNA_TcMar-Fot1 211423 211572 83 + . . scaffold807 WUBlastX DNA_TcMar-Fot1 211548 211595 28 + . . scaffold807 WUBlastX DNA_TcMar-Fot1 211713 211940 49 + . . scaffold807 WUBlastX DNA_TcMar-Fot1 211785 211937 49 + . . scaffold807 GLEAN promoter 222930 223929 0.363705 + . ID=CGI_10011461; scaffold807 TRF Tandem_Repeat 223170 223205 63 + . . scaffold807 TRF Tandem_Repeat 223170 223212 50 + . . scaffold807 GLEAN mRNA 223930 228442 0.363705 + . ID=CGI_10011461; scaffold807 GLEAN promoter 253471 254470 0.99861 + . ID=CGI_10011462; scaffold807 GLEAN mRNA 254471 256597 0.99861 + . ID=CGI_10011462; scaffold807 GLEAN mRNA 258300 259367 0.999984 - . ID=CGI_10011463; scaffold807 WUBlastX LTR_Gypsy 258330 258857 25 - . . scaffold807 GLEAN promoter 259368 260367 0.999984 - . ID=CGI_10011463; scaffold807 GLEAN promoter 260137 261136 1 + . ID=CGI_10011464; scaffold807 GLEAN mRNA 261137 262930 1 + . ID=CGI_10011464; scaffold807 GLEAN mRNA 263847 274034 0.999671 - . ID=CGI_10011465; scaffold807 GLEAN promoter 274035 275034 0.999671 - . ID=CGI_10011465; scaffold807 WUBlastX LINE_RTE-BovB 274400 274555 65 + . . scaffold807 WUBlastX LINE_RTE-BovB 274427 274552 66 + . . scaffold807 WUBlastX LINE_RTE-X 279235 280272 218 - . . scaffold807 WUBlastX LINE_RTE-X 279400 280872 702 - . . scaffold807 WUBlastX LINE_RTE-X 280871 281050 119 - . . scaffold807 WUBlastX LINE_RTE-X 280871 281302 56 - . . scaffold807 TRF Tandem_Repeat 283943 283990 96 + . . scaffold808 GLEAN promoter 7475 8474 0.999138 + . ID=CGI_10019010; scaffold808 GLEAN mRNA 8475 13355 0.999138 + . ID=CGI_10019010; scaffold808 TRF Tandem_Repeat 8872 9002 181 + . . scaffold808 GLEAN mRNA 14975 46006 0.998705 - . ID=CGI_10019011; scaffold808 GLEAN promoter 46007 47006 0.998705 - . ID=CGI_10019011; scaffold808 GLEAN mRNA 46630 50105 0.533894 - . ID=CGI_10019012; scaffold808 GLEAN promoter 50106 51105 0.533894 - . ID=CGI_10019012; scaffold808 GLEAN mRNA 52386 82534 0.639178 - . ID=CGI_10019013; scaffold808 TRF Tandem_Repeat 69587 69683 139 + . . scaffold808 TRF Tandem_Repeat 69591 69703 90 + . . scaffold808 TRF Tandem_Repeat 69630 69695 51 + . . scaffold808 GLEAN promoter 82535 83534 0.639178 - . ID=CGI_10019013; scaffold808 GLEAN promoter 85375 86374 1 + . ID=CGI_10019014; scaffold808 GLEAN mRNA 86375 98050 1 + . ID=CGI_10019014; scaffold808 TRF Tandem_Repeat 89422 90197 1144 + . . scaffold808 GLEAN promoter 102014 103013 1 + . ID=CGI_10019015; scaffold808 GLEAN promoter 102543 103542 0.999991 + . ID=CGI_10019016; scaffold808 GLEAN mRNA 103014 103478 1 + . ID=CGI_10019015; scaffold808 GLEAN mRNA 103543 103767 0.999991 + . ID=CGI_10019016; scaffold808 TRF Tandem_Repeat 106011 106121 68 + . . scaffold808 TRF Tandem_Repeat 106011 106127 80 + . . scaffold808 GLEAN mRNA 112392 119143 0.835006 - . ID=CGI_10019017; scaffold808 GLEAN promoter 119144 120143 0.835006 - . ID=CGI_10019017; scaffold808 TRF Tandem_Repeat 129004 129038 52 + . . scaffold808 TRF Tandem_Repeat 129230 129284 110 + . . scaffold808 WUBlastX LINE_L2 133289 133357 25 + . . scaffold808 WUBlastX LINE_L2 133893 134372 63 + . . scaffold808 WUBlastX LINE_L2 133989 134372 82 + . . scaffold808 WUBlastX LINE_RTE-X 134052 134804 425 + . . scaffold808 WUBlastX LINE_RTE-X 134780 135028 114 + . . scaffold808 WUBlastX LINE_RTE-X 134813 135133 61 + . . scaffold808 WUBlastX LINE_RTE-BovB 143070 143399 134 + . . scaffold808 WUBlastX LINE_RTE-BovB 143157 143375 160 + . . scaffold808 TRF Tandem_Repeat 155767 155828 106 + . . scaffold808 GLEAN mRNA 163011 189170 0.494982 - . ID=CGI_10019018; scaffold808 TRF Tandem_Repeat 163695 163721 54 + . . scaffold808 GLEAN promoter 164531 165530 0.999676 + . ID=CGI_10019019; scaffold808 GLEAN mRNA 165531 167172 0.999676 + . ID=CGI_10019019; scaffold808 WUBlastX LTR_DIRS 170682 171341 284 + . . scaffold808 WUBlastX LTR_DIRS 171279 173324 1263 + . . scaffold808 TRF Tandem_Repeat 183522 183558 56 + . . scaffold808 WUBlastX LINE_L1-Tx1 185233 185604 96 - . . scaffold808 WUBlastX LINE_L1 185603 188719 1048 - . . scaffold808 WUBlastX LINE_L1-Tx1 185609 188149 1187 - . . scaffold808 WUBlastX LINE_L1-Tx1 188722 188982 160 - . . scaffold808 GLEAN promoter 189171 190170 0.494982 - . ID=CGI_10019018; scaffold808 GLEAN mRNA 192203 193968 1 - . ID=CGI_10019020; scaffold808 GLEAN promoter 193969 194968 1 - . ID=CGI_10019020; scaffold808 GLEAN promoter 196063 197062 0.999986 + . ID=CGI_10019021; scaffold808 GLEAN mRNA 197063 200817 0.999986 + . ID=CGI_10019021; scaffold808 WUBlastX LINE_L1 201877 202629 107 - . . scaffold808 WUBlastX LINE_L1-Tx1 202009 202638 142 - . . scaffold808 WUBlastX LINE_L1-Tx1 202619 202729 26 - . . scaffold808 WUBlastX LINE_L1 202625 202711 41 - . . scaffold808 WUBlastX LINE_I 203033 203578 69 - . . scaffold808 WUBlastX LINE_L1-Tx1 203375 203686 33 - . . scaffold808 WUBlastX LINE_L1-Tx1 203683 204072 133 - . . scaffold808 TRF Tandem_Repeat 213961 215406 2065 + . . scaffold808 TRF Tandem_Repeat 213961 215406 2082 + . . scaffold808 TRF Tandem_Repeat 215435 215466 55 + . . scaffold808 TRF Tandem_Repeat 218336 218378 86 + . . scaffold808 TRF Tandem_Repeat 226970 228174 1865 + . . scaffold808 TRF Tandem_Repeat 235675 236835 1107 + . . scaffold808 GLEAN mRNA 247199 248314 1 - . ID=CGI_10019023; scaffold808 GLEAN promoter 248315 249314 1 - . ID=CGI_10019023; scaffold808 GLEAN promoter 248686 249685 0.618117 + . ID=CGI_10019024; scaffold808 GLEAN mRNA 249686 251227 0.618117 + . ID=CGI_10019024; scaffold808 TRF Tandem_Repeat 252054 252081 56 + . . scaffold808 TRF Tandem_Repeat 252081 252118 76 + . . scaffold808 TRF Tandem_Repeat 252333 252373 82 + . . scaffold808 TRF Tandem_Repeat 257669 257948 259 + . . scaffold808 TRF Tandem_Repeat 257674 257948 295 + . . scaffold808 WUBlastX DNA_TcMar-Marin 269194 269268 31 - . . scaffold808 WUBlastX DNA_TcMar-Marin 269258 269617 87 - . . scaffold808 WUBlastX DNA_TcMar-Marin 269768 269824 23 - . . scaffold808 WUBlastX DNA_TcMar-Marin 269835 269882 29 - . . scaffold808 WUBlastX DNA_TcMar-Marin 269835 269894 25 - . . scaffold808 WUBlastX DNA_MuDR 277445 277768 32 - . . scaffold808 WUBlastX DNA_MuDR 277782 277982 28 - . . scaffold808 GLEAN mRNA 278003 278227 0.866414 - . ID=CGI_10019025; scaffold808 GLEAN promoter 278228 279227 0.866414 - . ID=CGI_10019025; scaffold808 TRF Tandem_Repeat 280475 281297 1150 + . . scaffold808 WUBlastX DNA_TcMar-Tc1 284657 284827 65 - . . scaffold808 GLEAN mRNA 296798 297112 0.618228 - . ID=CGI_10019026; scaffold808 GLEAN promoter 297113 298112 0.618228 - . ID=CGI_10019026; scaffold808 TRF Tandem_Repeat 305224 305302 158 + . . scaffold808 TRF Tandem_Repeat 311412 311448 74 + . . scaffold808 TRF Tandem_Repeat 312815 312851 74 + . . scaffold808 GLEAN mRNA 314077 328688 0.999949 - . ID=CGI_10019027; scaffold808 GLEAN promoter 328689 329688 0.999949 - . ID=CGI_10019027; scaffold808 TRF Tandem_Repeat 330458 330508 86 + . . scaffold808 TRF Tandem_Repeat 334541 334582 84 + . . scaffold808 TRF Tandem_Repeat 339309 339406 180 + . . scaffold808 TRF Tandem_Repeat 339492 339555 128 + . . scaffold808 GLEAN promoter 350704 351703 0.676195 + . ID=CGI_10019028; scaffold808 GLEAN mRNA 351704 355832 0.676195 + . ID=CGI_10019028; scaffold808 TRF Tandem_Repeat 354404 354607 261 + . . scaffold808 GLEAN mRNA 358620 375025 0.979713 - . ID=CGI_10019029; scaffold808 TRF Tandem_Repeat 365924 365977 57 + . . scaffold808 GLEAN promoter 375026 376025 0.979713 - . ID=CGI_10019029; scaffold808 TRF Tandem_Repeat 376903 376927 50 + . . scaffold808 WUBlastX DNA_Chapaev 377621 378037 64 - . . scaffold808 WUBlastX DNA_Chapaev 377738 378118 30 - . . scaffold808 WUBlastX DNA_Chapaev 378144 378779 53 - . . scaffold808 WUBlastX DNA_Chapaev 378198 378599 69 - . . scaffold808 WUBlastX DNA_Chapaev 378228 378536 75 - . . scaffold808 WUBlastX DNA_Chapaev 378228 378965 28 - . . scaffold808 GLEAN mRNA 379988 382076 0.724584 - . ID=CGI_10019030; scaffold808 TRF Tandem_Repeat 380735 380779 54 + . . scaffold808 GLEAN promoter 380951 381950 0.813859 + . ID=CGI_10019031; scaffold808 GLEAN mRNA 381951 433040 0.813859 + . ID=CGI_10019031; scaffold808 GLEAN promoter 382077 383076 0.724584 - . ID=CGI_10019030; scaffold808 TRF Tandem_Repeat 384730 384784 110 + . . scaffold808 TRF Tandem_Repeat 390206 390255 91 + . . scaffold808 TRF Tandem_Repeat 398766 398811 92 + . . scaffold808 TRF Tandem_Repeat 401433 401518 172 + . . scaffold808 TRF Tandem_Repeat 409336 409667 431 + . . scaffold808 TRF Tandem_Repeat 417586 417650 112 + . . scaffold808 TRF Tandem_Repeat 427535 427914 375 + . . scaffold808 TRF Tandem_Repeat 427535 427914 349 + . . scaffold808 TRF Tandem_Repeat 427562 427824 226 + . . scaffold808 TRF Tandem_Repeat 427655 427775 100 + . . scaffold808 TRF Tandem_Repeat 440942 442493 393 + . . scaffold808 TRF Tandem_Repeat 440962 441093 140 + . . scaffold808 TRF Tandem_Repeat 441093 441275 181 + . . scaffold808 TRF Tandem_Repeat 441430 441641 162 + . . scaffold808 TRF Tandem_Repeat 441430 441953 494 + . . scaffold808 TRF Tandem_Repeat 441641 442493 589 + . . scaffold808 TRF Tandem_Repeat 443305 443377 96 + . . scaffold808 TRF Tandem_Repeat 447680 447712 66 + . . scaffold808 TRF Tandem_Repeat 448672 448712 82 + . . scaffold808 TRF Tandem_Repeat 450017 450119 206 + . . scaffold808 GLEAN promoter 470667 471666 0.998274 + . ID=CGI_10019032; scaffold808 GLEAN mRNA 471667 485386 0.998274 + . ID=CGI_10019032; scaffold808 TRF Tandem_Repeat 471947 471995 98 + . . scaffold808 TRF Tandem_Repeat 481644 481695 104 + . . scaffold808 TRF Tandem_Repeat 488639 488686 60 + . . scaffold808 TRF Tandem_Repeat 488839 488883 63 + . . scaffold808 GLEAN promoter 493453 494452 0.999944 + . ID=CGI_10019033; scaffold808 GLEAN mRNA 494453 496620 0.999944 + . ID=CGI_10019033; scaffold808 GLEAN promoter 499800 500799 0.999994 + . ID=CGI_10019034; scaffold808 GLEAN mRNA 500800 502973 0.999994 + . ID=CGI_10019034; scaffold808 GLEAN promoter 511924 512923 0.999948 + . ID=CGI_10019035; scaffold808 GLEAN mRNA 512924 515049 0.999948 + . ID=CGI_10019035; scaffold808 WUBlastX LINE_L1-Tx1 518443 518844 29 + . . scaffold808 WUBlastX LINE_L1-Tx1 518443 518661 39 + . . scaffold808 GLEAN promoter 525782 526781 0.999514 + . ID=CGI_10019036; scaffold808 GLEAN mRNA 526782 528563 0.999514 + . ID=CGI_10019036; scaffold808 GLEAN promoter 528127 529126 0.999514 + . ID=CGI_10019037; scaffold808 TRF Tandem_Repeat 529009 529711 955 + . . scaffold808 GLEAN mRNA 529127 529723 0.999514 + . ID=CGI_10019037; scaffold808 GLEAN mRNA 531513 535375 1 - . ID=CGI_10019038; scaffold808 TRF Tandem_Repeat 532165 532667 663 + . . scaffold808 TRF Tandem_Repeat 533598 533826 449 + . . scaffold808 GLEAN promoter 535376 536375 1 - . ID=CGI_10019038; scaffold808 TRF Tandem_Repeat 537625 537678 108 + . . scaffold808 TRF Tandem_Repeat 539668 539712 72 + . . scaffold808 TRF Tandem_Repeat 541449 541489 82 + . . scaffold808 TRF Tandem_Repeat 542799 542824 52 + . . scaffold808 GLEAN promoter 545348 546347 0.613406 + . ID=CGI_10019039; scaffold808 GLEAN mRNA 546348 551353 0.613406 + . ID=CGI_10019039; scaffold808 TRF Tandem_Repeat 548704 548754 102 + . . scaffold808 GLEAN mRNA 558169 567929 0.748318 - . ID=CGI_10019040; scaffold808 GLEAN promoter 567930 568929 0.748318 - . ID=CGI_10019040; scaffold808 TRF Tandem_Repeat 570386 570433 96 + . . scaffold808 TRF Tandem_Repeat 570531 570569 78 + . . scaffold808 GLEAN mRNA 571416 573441 1 - . ID=CGI_10019041; scaffold808 TRF Tandem_Repeat 572834 572904 92 + . . scaffold808 GLEAN promoter 573442 574441 1 - . ID=CGI_10019041; scaffold808 GLEAN mRNA 573744 576031 0.999993 - . ID=CGI_10019042; scaffold808 GLEAN promoter 576032 576850 0.999993 - . ID=CGI_10019042; scaffold808 TRF Tandem_Repeat 576289 576321 57 + . . scaffold808 TRF Tandem_Repeat 576347 576384 67 + . . scaffold808 TRF Tandem_Repeat 576390 576418 58 + . . scaffold809 TRF Tandem_Repeat 43397 43444 96 + . . scaffold809 WUBlastX LTR_Gypsy 54554 54628 43 + . . scaffold809 WUBlastX LTR_Gypsy 54738 55037 34 + . . scaffold809 WUBlastX LTR_Gypsy-Cigr 54738 54935 72 + . . scaffold809 WUBlastX LTR_Gypsy 54741 54977 52 + . . scaffold809 TRF Tandem_Repeat 62540 62576 74 + . . scaffold809 TRF Tandem_Repeat 70529 70590 124 + . . scaffold809 WUBlastX LINE_Penelope 82421 82534 35 + . . scaffold809 WUBlastX LINE_Penelope 82645 82752 27 + . . scaffold809 WUBlastX LINE_Penelope 82678 82812 54 + . . scaffold809 WUBlastX LINE_Penelope 82862 83131 42 + . . scaffold809 WUBlastX LINE_Penelope 83199 83402 87 + . . scaffold809 WUBlastX LINE_Penelope 83202 83726 50 + . . scaffold809 WUBlastX LINE_Penelope 83211 83540 70 + . . scaffold809 TRF Tandem_Repeat 99731 99807 109 + . . scaffold809 GLEAN promoter 101798 102797 0.991748 + . ID=CGI_10006490; scaffold809 GLEAN mRNA 102798 115167 0.991748 + . ID=CGI_10006490; scaffold809 WUBlastX LINE_RTE-X 102954 103313 60 + . . scaffold809 TRF Tandem_Repeat 104078 104104 54 + . . scaffold809 WUBlastX LTR_Ngaro 105379 106455 183 + . . scaffold809 WUBlastX LTR_Ngaro 105673 106461 198 + . . scaffold809 WUBlastX LTR_Ngaro 106439 107998 1103 + . . scaffold809 WUBlastX LTR_Ngaro 107974 108255 85 + . . scaffold809 TRF Tandem_Repeat 111672 111765 118 + . . scaffold809 TRF Tandem_Repeat 111928 112066 109 + . . scaffold809 TRF Tandem_Repeat 112143 112234 150 + . . scaffold809 GLEAN promoter 119032 120031 0.553857 + . ID=CGI_10006493; scaffold809 GLEAN mRNA 120032 128741 0.553857 + . ID=CGI_10006493; scaffold809 WUBlastX LTR_Gypsy 121558 121674 66 + . . scaffold809 TRF Tandem_Repeat 128277 128359 166 + . . scaffold809 GLEAN promoter 131769 132768 0.709233 + . ID=CGI_10006494; scaffold809 GLEAN mRNA 132769 134166 0.709233 + . ID=CGI_10006494; scaffold809 GLEAN promoter 137709 138708 0.997448 + . ID=CGI_10006495; scaffold809 GLEAN mRNA 138709 150762 0.997448 + . ID=CGI_10006495; scaffold809 TRF Tandem_Repeat 139266 139330 85 + . . scaffold809 TRF Tandem_Repeat 140752 140789 76 + . . scaffold809 TRF Tandem_Repeat 141064 141114 57 + . . scaffold809 TRF Tandem_Repeat 143941 143969 51 + . . scaffold81 GLEAN mRNA 584 1423 1 - . ID=CGI_10000340; scaffold81 GLEAN promoter 1424 2423 1 - . ID=CGI_10000340; scaffold81 WUBlastX LINE_RTE-X 3683 3907 48 + . . scaffold810 GLEAN mRNA 378 1240 0.999842 - . ID=CGI_10005274; scaffold810 GLEAN promoter 1241 2240 0.999842 - . ID=CGI_10005274; scaffold810 GLEAN mRNA 6129 11396 0.500274 - . ID=CGI_10005275; scaffold810 GLEAN promoter 11397 12396 0.500274 - . ID=CGI_10005275; scaffold810 TRF Tandem_Repeat 21892 21941 68 + . . scaffold810 WUBlastX LINE_RTE-X 52676 53401 185 - . . scaffold810 WUBlastX LINE_RTE-X 52808 53401 325 - . . scaffold810 WUBlastX LTR_Gypsy 65247 65528 68 + . . scaffold810 WUBlastX LTR_Gypsy 65578 65823 20 + . . scaffold810 GLEAN mRNA 69045 77193 1 - . ID=CGI_10005276; scaffold810 GLEAN promoter 77194 78193 1 - . ID=CGI_10005276; scaffold810 TRF Tandem_Repeat 92353 92463 127 + . . scaffold810 TRF Tandem_Repeat 92685 92735 102 + . . scaffold810 TRF Tandem_Repeat 93522 93564 86 + . . scaffold810 TRF Tandem_Repeat 93645 93705 122 + . . scaffold810 GLEAN promoter 93876 94875 0.857392 + . ID=CGI_10005277; scaffold810 TRF Tandem_Repeat 93921 94030 125 + . . scaffold810 GLEAN mRNA 94876 103864 0.857392 + . ID=CGI_10005277; scaffold810 TRF Tandem_Repeat 99695 99750 112 + . . scaffold810 TRF Tandem_Repeat 120622 120652 62 + . . scaffold811 GLEAN mRNA 1512 2169 1 - . ID=CGI_10000223; scaffold811 GLEAN promoter 2170 3030 1 - . ID=CGI_10000223; scaffold812 GLEAN promoter 2616 3615 0.67845 + . ID=CGI_10002494; scaffold812 GLEAN mRNA 3616 16939 0.67845 + . ID=CGI_10002494; scaffold812 TRF Tandem_Repeat 11017 11105 88 + . . scaffold812 WUBlastX LINE_RTE-BovB 17222 17500 39 + . . scaffold812 GLEAN mRNA 26156 26458 0.999372 - . ID=CGI_10002495; scaffold812 GLEAN promoter 26459 27458 0.999372 - . ID=CGI_10002495; scaffold812 GLEAN promoter 26686 27685 0.985139 + . ID=CGI_10002496; scaffold812 GLEAN mRNA 27686 30868 0.985139 + . ID=CGI_10002496; scaffold812 TRF Tandem_Repeat 29918 30134 179 + . . scaffold812 TRF Tandem_Repeat 38504 38547 88 + . . scaffold814 GLEAN promoter 28302 29301 0.46577 + . ID=CGI_10008192; scaffold814 TRF Tandem_Repeat 29209 29247 69 + . . scaffold814 GLEAN mRNA 29302 35325 0.46577 + . ID=CGI_10008192; scaffold814 TRF Tandem_Repeat 30326 30431 158 + . . scaffold814 WUBlastX LINE_RTE-X 37756 37893 60 - . . scaffold814 TRF Tandem_Repeat 43911 43935 50 + . . scaffold814 TRF Tandem_Repeat 55081 55544 768 + . . scaffold814 TRF Tandem_Repeat 60703 61047 450 + . . scaffold814 TRF Tandem_Repeat 60741 61081 460 + . . scaffold814 GLEAN mRNA 61093 65045 0.999995 - . ID=CGI_10008193; scaffold814 GLEAN promoter 65046 66045 0.999995 - . ID=CGI_10008193; scaffold814 TRF Tandem_Repeat 72818 72856 60 + . . scaffold814 WUBlastX LTR_DIRS 73867 73989 71 + . . scaffold814 TRF Tandem_Repeat 74362 74574 234 + . . scaffold814 TRF Tandem_Repeat 76504 77768 1555 + . . scaffold814 GLEAN promoter 82997 83996 0.997298 + . ID=CGI_10008194; scaffold814 GLEAN mRNA 83997 88485 0.997298 + . ID=CGI_10008194; scaffold814 WUBlastX LTR_Ngaro 85526 86416 290 - . . scaffold814 WUBlastX LTR_Gypsy 86461 86604 27 - . . scaffold814 WUBlastX LTR_Ngaro 86488 87855 949 - . . scaffold814 WUBlastX LTR_Ngaro 86503 88095 813 - . . scaffold814 WUBlastX LTR_Ngaro 88569 88820 79 - . . scaffold814 GLEAN mRNA 88961 89362 1 - . ID=CGI_10008195; scaffold814 GLEAN promoter 89363 90362 1 - . ID=CGI_10008195; scaffold814 WUBlastX DNA_IS4EU 95984 96502 149 + . . scaffold814 WUBlastX DNA_IS4EU 96505 96642 44 + . . scaffold814 GLEAN promoter 100948 101947 0.999968 + . ID=CGI_10008196; scaffold814 GLEAN mRNA 101948 102635 0.999968 + . ID=CGI_10008196; scaffold814 GLEAN promoter 107326 108325 0.86536 + . ID=CGI_10008197; scaffold814 GLEAN mRNA 108326 114391 0.86536 + . ID=CGI_10008197; scaffold814 TRF Tandem_Repeat 112744 112857 180 + . . scaffold814 GLEAN mRNA 115690 121841 0.579076 - . ID=CGI_10008198; scaffold814 TRF Tandem_Repeat 118122 118173 77 + . . scaffold814 TRF Tandem_Repeat 118122 118176 83 + . . scaffold814 TRF Tandem_Repeat 118135 118176 66 + . . scaffold814 TRF Tandem_Repeat 120737 120839 91 + . . scaffold814 GLEAN promoter 121842 122841 0.579076 - . ID=CGI_10008198; scaffold814 TRF Tandem_Repeat 122831 122960 98 + . . scaffold814 TRF Tandem_Repeat 122988 123132 121 + . . scaffold814 TRF Tandem_Repeat 123217 123303 113 + . . scaffold814 WUBlastX LINE_I 124155 124643 72 - . . scaffold814 WUBlastX LINE_CR1 124245 124925 356 - . . scaffold814 WUBlastX LINE_CR1 124892 125041 40 - . . scaffold814 WUBlastX LINE_CR1 124892 125011 46 - . . scaffold814 WUBlastX LINE_CR1 125313 125396 20 - . . scaffold814 WUBlastX LINE_CR1 126180 126260 22 - . . scaffold814 GLEAN mRNA 126235 129167 1 - . ID=CGI_10008199; scaffold814 GLEAN promoter 128505 129504 1 + . ID=CGI_10008200; scaffold814 GLEAN promoter 129168 130167 1 - . ID=CGI_10008199; scaffold814 GLEAN mRNA 129505 131948 1 + . ID=CGI_10008200; scaffold814 GLEAN mRNA 135572 171537 0.91229 - . ID=CGI_10008201; scaffold814 TRF Tandem_Repeat 135984 136043 120 + . . scaffold814 TRF Tandem_Repeat 150508 150543 72 + . . scaffold814 TRF Tandem_Repeat 151453 152044 963 + . . scaffold814 TRF Tandem_Repeat 151885 151985 60 + . . scaffold814 TRF Tandem_Repeat 153119 153333 178 + . . scaffold814 TRF Tandem_Repeat 171211 171268 107 + . . scaffold814 GLEAN promoter 171538 172537 0.91229 - . ID=CGI_10008201; scaffold814 GLEAN mRNA 177129 183716 1 - . ID=CGI_10008202; scaffold814 GLEAN promoter 183717 184716 1 - . ID=CGI_10008202; scaffold815 TRF Tandem_Repeat 2810 2859 66 + . . scaffold815 GLEAN mRNA 3623 27508 0.999835 - . ID=CGI_10001932; scaffold815 WUBlastX LINE_RTE-X 7793 8050 37 + . . scaffold815 WUBlastX LINE_RTE-X 7853 8206 75 + . . scaffold815 WUBlastX LINE_RTE-X 8896 9258 145 + . . scaffold815 WUBlastX LINE_RTE-X 8899 9399 116 + . . scaffold815 WUBlastX LINE_RTE-X 9276 9440 111 + . . scaffold815 WUBlastX LINE_RTE-X 9458 9967 89 + . . scaffold815 WUBlastX LINE_RTE-X 9479 9802 103 + . . scaffold815 WUBlastX LINE_CR1 10487 10561 22 + . . scaffold815 WUBlastX LINE_RTE-X 10632 11174 41 + . . scaffold815 WUBlastX LINE_RTE-X 10635 11315 23 + . . scaffold815 WUBlastX LINE_RTE-X 11395 11589 66 + . . scaffold815 WUBlastX LINE_RTE-X 11395 11673 47 + . . scaffold815 WUBlastX LINE_RTE-X 11395 11550 90 + . . scaffold815 TRF Tandem_Repeat 17894 17942 98 + . . scaffold815 TRF Tandem_Repeat 18679 18712 50 + . . scaffold815 WUBlastX DNA_hAT-hATw 19971 21215 420 - . . scaffold815 GLEAN promoter 27509 28508 0.999835 - . ID=CGI_10001932; scaffold816 WUBlastX LINE_RTE-X 1761 2060 24 - . . scaffold816 WUBlastX LINE_RTE-X 1842 2060 46 - . . scaffold816 WUBlastX DNA_Crypton 4543 5016 213 - . . scaffold816 WUBlastX DNA_Crypton 4998 5075 29 - . . scaffold816 WUBlastX LTR_Ngaro 7990 8247 47 - . . scaffold816 WUBlastX DNA_IS4EU 9789 10331 138 - . . scaffold816 WUBlastX DNA_IS4EU 9789 10529 83 - . . scaffold816 TRF Tandem_Repeat 60862 60968 133 + . . scaffold816 TRF Tandem_Repeat 62560 62663 93 + . . scaffold816 WUBlastX LINE_L1-Tx1 66999 67145 24 - . . scaffold816 WUBlastX LINE_Jockey 67808 68275 25 - . . scaffold816 WUBlastX LINE_CR1 67883 68404 155 - . . scaffold816 GLEAN mRNA 72363 73322 0.999213 - . ID=CGI_10015652; scaffold816 GLEAN promoter 73323 74322 0.999213 - . ID=CGI_10015652; scaffold816 TRF Tandem_Repeat 73917 75790 3241 + . . scaffold816 TRF Tandem_Repeat 77405 77437 66 + . . scaffold816 WUBlastX DNA_hAT-Tip100 83855 84238 117 + . . scaffold816 WUBlastX DNA_hAT-Tip100 83894 84490 34 + . . scaffold816 WUBlastX DNA_hAT-Tip100 84505 85041 31 + . . scaffold816 TRF Tandem_Repeat 96591 96629 60 + . . scaffold816 WUBlastX DNA_Crypton 98242 98595 54 + . . scaffold816 WUBlastX DNA_Crypton 99181 99663 56 + . . scaffold816 WUBlastX LTR_Gypsy-Cigr 104990 106435 828 + . . scaffold816 GLEAN promoter 105538 106537 0.991901 + . ID=CGI_10015653; scaffold816 GLEAN mRNA 106538 107244 0.991901 + . ID=CGI_10015653; scaffold816 WUBlastX LTR_Gypsy-Cigr 108471 108776 73 + . . scaffold816 TRF Tandem_Repeat 141911 142064 104 + . . scaffold816 TRF Tandem_Repeat 148043 148088 56 + . . scaffold816 TRF Tandem_Repeat 148046 148096 77 + . . scaffold816 TRF Tandem_Repeat 148046 148096 50 + . . scaffold816 TRF Tandem_Repeat 148880 149796 1097 + . . scaffold816 TRF Tandem_Repeat 151235 151268 52 + . . scaffold816 TRF Tandem_Repeat 156327 156366 57 + . . scaffold816 TRF Tandem_Repeat 161298 161354 114 + . . scaffold816 TRF Tandem_Repeat 161355 161408 108 + . . scaffold816 TRF Tandem_Repeat 167020 167073 63 + . . scaffold816 WUBlastX LINE_L1-Tx1 168507 168626 22 + . . scaffold816 WUBlastX LINE_L1-Tx1 168646 168936 71 + . . scaffold816 WUBlastX LINE_L1-Tx1 168941 169330 40 + . . scaffold816 WUBlastX LINE_L1 168965 169090 49 + . . scaffold816 WUBlastX LINE_RTE-X 169571 170179 60 - . . scaffold816 WUBlastX LINE_RTE-X 169685 171085 887 - . . scaffold816 WUBlastX LINE_RTE-X 171054 171908 543 - . . scaffold816 WUBlastX LINE_RTE-X 171902 172852 256 - . . scaffold816 WUBlastX LINE_RTE-X 172435 172962 74 - . . scaffold816 WUBlastX LINE_RTE-X 173050 173688 192 - . . scaffold816 GLEAN promoter 174803 175802 0.224935 + . ID=CGI_10015654; scaffold816 TRF Tandem_Repeat 175389 175428 71 + . . scaffold816 GLEAN mRNA 175803 192379 0.224935 + . ID=CGI_10015654; scaffold816 TRF Tandem_Repeat 184462 184534 146 + . . scaffold816 WUBlastX LTR_DIRS 195901 196647 22 - . . scaffold816 WUBlastX LTR_Ngaro 196099 196782 307 - . . scaffold816 WUBlastX LTR_Ngaro 196836 197189 28 - . . scaffold816 WUBlastX LTR_Ngaro 196842 197132 67 - . . scaffold816 WUBlastX LTR_Ngaro 197390 197677 66 - . . scaffold816 WUBlastX LTR_Ngaro 197441 197800 103 - . . scaffold816 TRF Tandem_Repeat 198523 198585 56 + . . scaffold816 TRF Tandem_Repeat 203784 203837 108 + . . scaffold816 TRF Tandem_Repeat 210844 210872 51 + . . scaffold816 GLEAN promoter 222398 223397 0.358147 + . ID=CGI_10015655; scaffold816 TRF Tandem_Repeat 222971 223031 79 + . . scaffold816 TRF Tandem_Repeat 222971 223034 103 + . . scaffold816 GLEAN mRNA 223398 238743 0.358147 + . ID=CGI_10015655; scaffold816 WUBlastX DNA_TcMar-Tc1 229476 229697 66 - . . scaffold816 WUBlastX DNA_TcMar-Tc1 229488 229742 49 - . . scaffold816 WUBlastX DNA_TcMar-Tc1 229846 230040 54 - . . scaffold816 WUBlastX DNA_TcMar-Tc1 229897 230046 65 - . . scaffold816 WUBlastX DNA_TcMar-Marin 244686 244787 28 + . . scaffold816 TRF Tandem_Repeat 245980 246012 52 + . . scaffold816 TRF Tandem_Repeat 248367 248421 74 + . . scaffold816 WUBlastX LINE_CR1-L2 270505 271119 262 - . . scaffold816 WUBlastX LINE_L1 270571 271524 51 - . . scaffold816 WUBlastX LINE_L2 270586 271233 88 - . . scaffold816 GLEAN mRNA 275327 275539 0.999372 - . ID=CGI_10015656; scaffold816 GLEAN promoter 275540 276539 0.999372 - . ID=CGI_10015656; scaffold816 WUBlastX DNA_TcMar-Pogo 276269 276493 83 - . . scaffold816 TRF Tandem_Repeat 278441 278498 109 + . . scaffold816 WUBlastX DNA_TcMar-Pogo 283119 283286 75 - . . scaffold816 WUBlastX DNA_TcMar-Pogo 283288 283374 28 - . . scaffold816 WUBlastX DNA_TcMar-Tigge 283318 283434 25 - . . scaffold816 WUBlastX DNA_TcMar-Pogo 283399 283509 26 - . . scaffold816 TRF Tandem_Repeat 304115 304179 103 + . . scaffold816 WUBlastX LINE_RTE-X 328801 329049 73 - . . scaffold816 WUBlastX LINE_RTE-X 328843 329952 428 - . . scaffold816 WUBlastX LINE_Rex-Babar 329572 330069 57 - . . scaffold816 TRF Tandem_Repeat 334815 335624 772 + . . scaffold816 TRF Tandem_Repeat 337372 337401 51 + . . scaffold816 TRF Tandem_Repeat 339817 340691 1253 + . . scaffold816 TRF Tandem_Repeat 347231 347291 50 + . . scaffold816 TRF Tandem_Repeat 348992 349062 142 + . . scaffold816 TRF Tandem_Repeat 349251 349291 55 + . . scaffold816 TRF Tandem_Repeat 350007 350095 90 + . . scaffold816 TRF Tandem_Repeat 350032 350095 58 + . . scaffold816 TRF Tandem_Repeat 350168 350228 50 + . . scaffold816 TRF Tandem_Repeat 359079 360775 2445 + . . scaffold816 TRF Tandem_Repeat 360937 361023 111 + . . scaffold816 WUBlastX LINE_L1-Tx1 362689 365685 1355 - . . scaffold816 WUBlastX LINE_L1 362710 366450 1235 - . . scaffold816 WUBlastX LINE_RTE-BovB 366740 367075 80 - . . scaffold816 WUBlastX LINE_L2 366800 367351 115 - . . scaffold816 WUBlastX LINE_L2 366803 367498 112 - . . scaffold816 TRF Tandem_Repeat 367582 367626 90 + . . scaffold816 TRF Tandem_Repeat 369045 369263 257 + . . scaffold816 TRF Tandem_Repeat 369955 370250 343 + . . scaffold816 TRF Tandem_Repeat 369955 370250 278 + . . scaffold816 WUBlastX LTR_Gypsy-Cigr 373503 374138 68 - . . scaffold816 WUBlastX LTR_Gypsy 373704 374096 72 - . . scaffold816 WUBlastX LTR_Gypsy 373851 374210 69 - . . scaffold816 WUBlastX LTR_Gypsy-Cigr 373857 374150 96 - . . scaffold816 WUBlastX LTR_Gypsy-Cigr 374306 374854 85 - . . scaffold816 WUBlastX LTR_Gypsy 374522 374917 47 - . . scaffold816 GLEAN mRNA 394065 395163 0.997325 - . ID=CGI_10015657; scaffold816 GLEAN promoter 395164 396163 0.997325 - . ID=CGI_10015657; scaffold816 GLEAN mRNA 397397 406861 0.525945 - . ID=CGI_10015658; scaffold816 GLEAN promoter 406862 407861 0.525945 - . ID=CGI_10015658; scaffold816 TRF Tandem_Repeat 411903 411945 77 + . . scaffold816 WUBlastX LINE_Penelope 438214 438780 140 + . . scaffold817 GLEAN promoter 1621 2620 0.998889 + . ID=CGI_10008650; scaffold817 GLEAN mRNA 2621 21484 0.998889 + . ID=CGI_10008650; scaffold817 GLEAN mRNA 6900 18319 1 - . ID=CGI_10008651; scaffold817 GLEAN promoter 18320 19319 1 - . ID=CGI_10008651; scaffold817 GLEAN mRNA 22423 26141 0.992464 - . ID=CGI_10008652; scaffold817 GLEAN promoter 26142 27141 0.992464 - . ID=CGI_10008652; scaffold817 TRF Tandem_Repeat 30178 30212 70 + . . scaffold817 TRF Tandem_Repeat 33024 33050 54 + . . scaffold817 GLEAN mRNA 36105 44004 0.999599 - . ID=CGI_10008653; scaffold817 GLEAN promoter 44005 45004 0.999599 - . ID=CGI_10008653; scaffold817 GLEAN mRNA 47004 50153 0.999225 - . ID=CGI_10008654; scaffold817 WUBlastX DNA_MuDR 47291 47389 42 - . . scaffold817 WUBlastX DNA_MuDR 47536 47769 33 - . . scaffold817 WUBlastX DNA_MuDR 47596 47766 54 - . . scaffold817 WUBlastX DNA_MuDR 47880 48005 59 - . . scaffold817 WUBlastX DNA_MuDR 47886 48044 54 - . . scaffold817 GLEAN promoter 50154 51153 0.999225 - . ID=CGI_10008654; scaffold817 GLEAN mRNA 50165 50320 0.712526 - . ID=CGI_10008655; scaffold817 WUBlastX DNA_MuDR 50183 50365 99 - . . scaffold817 GLEAN promoter 50321 51320 0.712526 - . ID=CGI_10008655; scaffold817 GLEAN mRNA 50559 53902 0.846107 - . ID=CGI_10008656; scaffold817 GLEAN promoter 53903 54902 0.846107 - . ID=CGI_10008656; scaffold817 GLEAN mRNA 54160 69177 0.983542 - . ID=CGI_10008657; scaffold817 WUBlastX LTR_Copia 54990 56162 120 - . . scaffold817 WUBlastX LTR_Gypsy-Cigr 55167 56351 798 - . . scaffold817 TRF Tandem_Repeat 66190 66241 104 + . . scaffold817 WUBlastX DNA_Kolobok 67852 68100 113 - . . scaffold817 GLEAN promoter 69178 70177 0.983542 - . ID=CGI_10008657; scaffold817 GLEAN mRNA 70842 77028 0.999929 - . ID=CGI_10008658; scaffold817 GLEAN promoter 77029 78028 0.999929 - . ID=CGI_10008658; scaffold817 GLEAN mRNA 78690 83777 0.990809 - . ID=CGI_10008659; scaffold817 GLEAN promoter 83778 84777 0.990809 - . ID=CGI_10008659; scaffold817 GLEAN promoter 86458 87457 1 + . ID=CGI_10008660; scaffold817 TRF Tandem_Repeat 87319 87357 78 + . . scaffold817 GLEAN mRNA 87458 89766 1 + . ID=CGI_10008660; scaffold817 TRF Tandem_Repeat 108587 108622 72 + . . scaffold817 GLEAN promoter 108962 109961 1 + . ID=CGI_10008661; scaffold817 GLEAN mRNA 109962 118201 1 + . ID=CGI_10008661; scaffold817 GLEAN mRNA 121715 124064 0.990259 - . ID=CGI_10008662; scaffold817 GLEAN promoter 124065 125064 0.990259 - . ID=CGI_10008662; scaffold817 GLEAN promoter 124941 125940 1 + . ID=CGI_10008664; scaffold817 GLEAN mRNA 125259 134409 0.889097 - . ID=CGI_10008663; scaffold817 GLEAN mRNA 125941 127705 1 + . ID=CGI_10008664; scaffold817 GLEAN promoter 134410 135409 0.889097 - . ID=CGI_10008663; scaffold817 GLEAN promoter 135171 136170 0.978667 + . ID=CGI_10008665; scaffold817 GLEAN mRNA 136171 151005 0.978667 + . ID=CGI_10008665; scaffold817 GLEAN mRNA 151164 154908 0.988089 - . ID=CGI_10008666; scaffold817 TRF Tandem_Repeat 152367 152407 82 + . . scaffold817 GLEAN promoter 154909 155908 0.988089 - . ID=CGI_10008666; scaffold817 WUBlastX LTR_Gypsy 167696 168010 25 + . . scaffold817 WUBlastX LTR_Gypsy 168136 168306 80 + . . scaffold817 WUBlastX LTR_Gypsy 168163 168255 89 + . . scaffold817 WUBlastX LTR_Gypsy 168267 168359 22 + . . scaffold817 TRF Tandem_Repeat 169059 169891 994 + . . scaffold817 TRF Tandem_Repeat 171512 171557 92 + . . scaffold817 TRF Tandem_Repeat 177293 178785 1816 + . . scaffold817 TRF Tandem_Repeat 177293 178699 1756 + . . scaffold817 WUBlastX DNA_hAT-Tag1 208570 208893 33 - . . scaffold817 WUBlastX DNA_hAT-Ac 208639 210153 471 - . . scaffold817 WUBlastX DNA_hAT-Ac 210427 210639 35 - . . scaffold817 WUBlastX DNA_hAT-Ac 210463 210720 101 - . . scaffold817 WUBlastX DNA_hAT 210840 211001 40 - . . scaffold818 WUBlastX DNA_Academ 3936 4310 93 - . . scaffold818 WUBlastX DNA_Academ 3936 4724 75 - . . scaffold818 WUBlastX DNA_Academ 4017 4553 110 - . . scaffold818 GLEAN mRNA 6719 13585 0.662564 - . ID=CGI_10014506; scaffold818 GLEAN promoter 13586 14585 0.662564 - . ID=CGI_10014506; scaffold818 TRF Tandem_Repeat 35294 35345 77 + . . scaffold818 WUBlastX DNA_IS4EU 35788 35877 54 - . . scaffold818 WUBlastX DNA_IS4EU 36142 36351 65 - . . scaffold818 WUBlastX LINE_RTE-X 41973 42248 61 - . . scaffold818 WUBlastX LINE_RTE-X 42030 42353 48 - . . scaffold818 WUBlastX LINE_RTE-X 42042 42287 58 - . . scaffold818 TRF Tandem_Repeat 45077 45138 124 + . . scaffold818 TRF Tandem_Repeat 47964 48003 80 + . . scaffold818 TRF Tandem_Repeat 53718 53763 92 + . . scaffold818 WUBlastX LINE_L1-Tx1 55351 55989 446 + . . scaffold818 WUBlastX LINE_CR1 57030 57086 26 + . . scaffold818 WUBlastX LINE_CR1-L2 57048 57086 27 + . . scaffold818 WUBlastX LINE_CR1 57094 57147 30 + . . scaffold818 WUBlastX LINE_CR1-L2 57246 57785 54 + . . scaffold818 WUBlastX LINE_CR1-L2 57246 57428 69 + . . scaffold818 TRF Tandem_Repeat 58803 58848 92 + . . scaffold818 WUBlastX LTR_Pao 63685 64023 54 - . . scaffold818 WUBlastX LTR_Pao 63775 64476 64 - . . scaffold818 GLEAN mRNA 65347 65814 0.999999 - . ID=CGI_10014508; scaffold818 WUBlastX LTR_Pao 65353 66729 1303 - . . scaffold818 GLEAN promoter 65815 66814 0.999999 - . ID=CGI_10014508; scaffold818 WUBlastX LTR_Pao 66730 66915 63 - . . scaffold818 WUBlastX LTR_Pao 66757 66912 90 - . . scaffold818 WUBlastX LTR_Pao 67752 69071 292 - . . scaffold818 WUBlastX LTR_Pao 67773 68351 347 - . . scaffold818 TRF Tandem_Repeat 79187 79272 84 + . . scaffold818 TRF Tandem_Repeat 82193 82315 194 + . . scaffold818 WUBlastX LTR_DIRS 95952 96476 122 + . . scaffold818 WUBlastX LTR_DIRS 96039 96473 153 + . . scaffold818 WUBlastX LTR_DIRS 96577 96657 22 + . . scaffold818 WUBlastX LTR_DIRS 96756 97208 57 + . . scaffold818 WUBlastX LTR_DIRS 96996 97211 127 + . . scaffold818 WUBlastX LTR_DIRS 97011 97268 75 + . . scaffold818 WUBlastX LTR_DIRS 97202 97303 24 + . . scaffold818 WUBlastX LTR_DIRS 97755 98201 92 + . . scaffold818 WUBlastX LTR_DIRS 97847 97972 97 + . . scaffold818 WUBlastX LTR_DIRS 98096 98239 45 + . . scaffold818 WUBlastX LTR_DIRS 98227 98688 247 + . . scaffold818 WUBlastX LTR_DIRS 98688 98957 90 + . . scaffold818 WUBlastX LTR_DIRS 98775 98957 99 + . . scaffold818 GLEAN promoter 103787 104786 0.320926 + . ID=CGI_10014509; scaffold818 GLEAN mRNA 104787 116918 0.320926 + . ID=CGI_10014509; scaffold818 TRF Tandem_Repeat 107102 107129 56 + . . scaffold818 TRF Tandem_Repeat 114838 115052 140 + . . scaffold818 TRF Tandem_Repeat 118219 118288 140 + . . scaffold818 GLEAN promoter 125109 126108 0.4424 + . ID=CGI_10014510; scaffold818 GLEAN mRNA 126109 126381 0.4424 + . ID=CGI_10014510; scaffold818 TRF Tandem_Repeat 130665 130701 56 + . . scaffold818 TRF Tandem_Repeat 141258 141283 52 + . . scaffold818 WUBlastX DNA_NOF? 142941 143477 50 - . . scaffold818 WUBlastX LINE_L1-Tx1 170676 172796 439 - . . scaffold818 WUBlastX LINE_L1-Tx1 172667 172906 52 - . . scaffold818 WUBlastX LINE_L1 172667 172867 58 - . . scaffold818 WUBlastX LINE_R2 172718 172813 73 - . . scaffold818 TRF Tandem_Repeat 176146 176199 108 + . . scaffold818 WUBlastX LTR_Ngaro 187096 187242 108 - . . scaffold818 WUBlastX LTR_Ngaro 187259 187543 49 - . . scaffold818 TRF Tandem_Repeat 191297 191385 178 + . . scaffold818 TRF Tandem_Repeat 191423 191448 52 + . . scaffold818 TRF Tandem_Repeat 202682 202741 86 + . . scaffold818 TRF Tandem_Repeat 240255 240285 62 + . . scaffold818 TRF Tandem_Repeat 240757 240793 74 + . . scaffold818 GLEAN mRNA 240879 250075 1 - . ID=CGI_10014511; scaffold818 TRF Tandem_Repeat 242575 243012 723 + . . scaffold818 TRF Tandem_Repeat 247095 247305 334 + . . scaffold818 TRF Tandem_Repeat 248387 249104 1130 + . . scaffold818 GLEAN promoter 250076 251075 1 - . ID=CGI_10014511; scaffold818 GLEAN promoter 250365 251364 1 + . ID=CGI_10014512; scaffold818 GLEAN mRNA 251365 253949 1 + . ID=CGI_10014512; scaffold818 GLEAN promoter 253700 254699 1 + . ID=CGI_10014513; scaffold818 GLEAN mRNA 254700 258280 1 + . ID=CGI_10014513; scaffold818 GLEAN promoter 257835 258834 0.999452 + . ID=CGI_10014514; scaffold818 GLEAN mRNA 258835 262150 0.999452 + . ID=CGI_10014514; scaffold818 TRF Tandem_Repeat 259979 260204 452 + . . scaffold818 GLEAN promoter 275309 276308 0.988898 + . ID=CGI_10014515; scaffold818 GLEAN mRNA 276309 285154 0.988898 + . ID=CGI_10014515; scaffold818 WUBlastX LINE_CR1-L2 278621 278839 45 - . . scaffold818 WUBlastX LINE_CR1-L2 278876 279004 29 - . . scaffold818 WUBlastX DNA_TcMar-Tc1 286337 286651 86 - . . scaffold818 WUBlastX DNA_TcMar-Tc1 286382 287164 83 - . . scaffold818 WUBlastX DNA_TcMar-Tc1 286403 286774 141 - . . scaffold818 TRF Tandem_Repeat 292167 292416 101 + . . scaffold818 TRF Tandem_Repeat 293327 294088 1036 + . . scaffold818 GLEAN promoter 294039 295038 1 + . ID=CGI_10014516; scaffold818 TRF Tandem_Repeat 294205 294230 52 + . . scaffold818 GLEAN mRNA 295039 298326 1 + . ID=CGI_10014516; scaffold818 TRF Tandem_Repeat 295187 295220 68 + . . scaffold818 TRF Tandem_Repeat 298740 298788 98 + . . scaffold818 TRF Tandem_Repeat 304081 304279 229 + . . scaffold818 TRF Tandem_Repeat 304081 304200 152 + . . scaffold818 GLEAN mRNA 311198 314455 0.982011 - . ID=CGI_10014517; scaffold818 GLEAN promoter 314456 315455 0.982011 - . ID=CGI_10014517; scaffold818 GLEAN mRNA 315020 328847 0.999518 - . ID=CGI_10014518; scaffold818 TRF Tandem_Repeat 323223 323463 135 + . . scaffold818 TRF Tandem_Repeat 324750 324780 62 + . . scaffold818 GLEAN promoter 328848 329847 0.999518 - . ID=CGI_10014518; scaffold818 TRF Tandem_Repeat 330829 330950 104 + . . scaffold818 TRF Tandem_Repeat 339534 339744 149 + . . scaffold818 TRF Tandem_Repeat 339534 339745 185 + . . scaffold818 TRF Tandem_Repeat 341065 341116 95 + . . scaffold818 GLEAN promoter 348727 349726 0.999949 + . ID=CGI_10014520; scaffold818 GLEAN mRNA 349727 360604 0.999949 + . ID=CGI_10014520; scaffold818 GLEAN promoter 361717 362716 0.999676 + . ID=CGI_10014521; scaffold818 GLEAN mRNA 362717 371632 0.999676 + . ID=CGI_10014521; scaffold818 GLEAN promoter 372569 373568 0.999999 + . ID=CGI_10014522; scaffold818 GLEAN mRNA 373569 380026 0.999999 + . ID=CGI_10014522; scaffold818 TRF Tandem_Repeat 376266 376333 118 + . . scaffold818 GLEAN mRNA 379400 380143 0.999524 - . ID=CGI_10014523; scaffold818 TRF Tandem_Repeat 379906 379953 80 + . . scaffold818 GLEAN promoter 380144 381143 0.999524 - . ID=CGI_10014523; scaffold818 GLEAN mRNA 380945 381708 1 - . ID=CGI_10014524; scaffold818 TRF Tandem_Repeat 381451 381521 92 + . . scaffold818 GLEAN promoter 381709 382708 1 - . ID=CGI_10014524; scaffold818 TRF Tandem_Repeat 382371 382435 130 + . . scaffold818 GLEAN promoter 386667 387666 0.999374 + . ID=CGI_10014525; scaffold818 GLEAN mRNA 387667 402111 0.999374 + . ID=CGI_10014525; scaffold818 TRF Tandem_Repeat 399021 399076 62 + . . scaffold819 TRF Tandem_Repeat 4383 4425 86 + . . scaffold819 GLEAN mRNA 7833 8864 0.935756 - . ID=CGI_10003888; scaffold819 GLEAN promoter 8865 9864 0.935756 - . ID=CGI_10003888; scaffold819 TRF Tandem_Repeat 9962 10009 96 + . . scaffold819 TRF Tandem_Repeat 33765 33817 106 + . . scaffold819 GLEAN promoter 33933 34932 0.447302 + . ID=CGI_10003889; scaffold819 TRF Tandem_Repeat 34005 34049 90 + . . scaffold819 TRF Tandem_Repeat 34558 34619 79 + . . scaffold819 GLEAN mRNA 34933 54933 0.447302 + . ID=CGI_10003889; scaffold819 TRF Tandem_Repeat 44574 44602 58 + . . scaffold819 TRF Tandem_Repeat 49298 49343 92 + . . scaffold819 WUBlastX LINE_L2 49524 49775 45 - . . scaffold819 TRF Tandem_Repeat 53047 53122 89 + . . scaffold819 TRF Tandem_Repeat 53048 53130 69 + . . scaffold819 GLEAN promoter 61858 62857 0.949108 + . ID=CGI_10003890; scaffold819 GLEAN mRNA 62858 81938 0.949108 + . ID=CGI_10003890; scaffold819 TRF Tandem_Repeat 73043 73085 50 + . . scaffold819 TRF Tandem_Repeat 73047 73089 59 + . . scaffold819 TRF Tandem_Repeat 85341 85381 82 + . . scaffold82 GLEAN promoter 1017 2016 1 + . ID=CGI_10025236; scaffold82 GLEAN mRNA 2017 8539 1 + . ID=CGI_10025236; scaffold82 GLEAN mRNA 5746 16278 0.999089 - . ID=CGI_10025237; scaffold82 TRF Tandem_Repeat 12374 12587 320 + . . scaffold82 TRF Tandem_Repeat 13842 13998 233 + . . scaffold82 GLEAN promoter 16279 17278 0.999089 - . ID=CGI_10025237; scaffold82 GLEAN mRNA 33635 48246 0.985053 - . ID=CGI_10025238; scaffold82 TRF Tandem_Repeat 33807 34123 430 + . . scaffold82 GLEAN promoter 48247 49246 0.985053 - . ID=CGI_10025238; scaffold82 TRF Tandem_Repeat 51191 51461 227 + . . scaffold82 TRF Tandem_Repeat 52500 52573 148 + . . scaffold82 TRF Tandem_Repeat 76949 77291 465 + . . scaffold82 TRF Tandem_Repeat 81927 81970 88 + . . scaffold82 TRF Tandem_Repeat 83321 83378 116 + . . scaffold82 TRF Tandem_Repeat 84030 84072 61 + . . scaffold82 TRF Tandem_Repeat 84033 84071 60 + . . scaffold82 GLEAN promoter 95515 96514 0.98953 + . ID=CGI_10025239; scaffold82 GLEAN mRNA 96515 110527 0.98953 + . ID=CGI_10025239; scaffold82 TRF Tandem_Repeat 113547 113583 74 + . . scaffold82 GLEAN promoter 114174 115173 0.447097 + . ID=CGI_10025240; scaffold82 GLEAN mRNA 115174 133320 0.447097 + . ID=CGI_10025240; scaffold82 TRF Tandem_Repeat 119526 119586 122 + . . scaffold82 TRF Tandem_Repeat 121733 121774 84 + . . scaffold82 TRF Tandem_Repeat 128637 129112 243 + . . scaffold82 TRF Tandem_Repeat 128652 129172 726 + . . scaffold82 GLEAN mRNA 135526 137555 1 - . ID=CGI_10025241; scaffold82 GLEAN promoter 137556 138555 1 - . ID=CGI_10025241; scaffold82 GLEAN mRNA 138254 148813 0.985796 - . ID=CGI_10025242; scaffold82 GLEAN promoter 148814 149813 0.985796 - . ID=CGI_10025242; scaffold82 TRF Tandem_Repeat 153559 153605 94 + . . scaffold82 GLEAN mRNA 167167 174451 0.999995 - . ID=CGI_10025243; scaffold82 GLEAN promoter 174452 175451 0.999995 - . ID=CGI_10025243; scaffold82 TRF Tandem_Repeat 175660 175734 116 + . . scaffold82 TRF Tandem_Repeat 175948 176024 50 + . . scaffold82 TRF Tandem_Repeat 176087 176137 102 + . . scaffold82 GLEAN promoter 180182 181181 1 + . ID=CGI_10025244; scaffold82 GLEAN mRNA 181182 187437 1 + . ID=CGI_10025244; scaffold82 TRF Tandem_Repeat 183327 183379 106 + . . scaffold82 WUBlastX LINE_RTE-X 184246 184665 101 - . . scaffold82 WUBlastX LINE_RTE-X 184363 184626 122 - . . scaffold82 WUBlastX LINE_I-Nimb 185131 185829 80 - . . scaffold82 WUBlastX LINE_RTE-X 185134 185610 232 - . . scaffold82 WUBlastX LINE_RTE-X 185134 185523 271 - . . scaffold82 GLEAN promoter 189229 190228 0.999064 + . ID=CGI_10025245; scaffold82 GLEAN mRNA 190229 197507 0.999064 + . ID=CGI_10025245; scaffold82 GLEAN promoter 199173 200172 0.999999 + . ID=CGI_10025246; scaffold82 GLEAN mRNA 200173 204382 0.999999 + . ID=CGI_10025246; scaffold82 GLEAN promoter 206536 207535 0.649891 + . ID=CGI_10025248; scaffold82 GLEAN mRNA 206554 209657 0.761819 - . ID=CGI_10025247; scaffold82 TRF Tandem_Repeat 207273 207302 53 + . . scaffold82 GLEAN mRNA 207536 221128 0.649891 + . ID=CGI_10025248; scaffold82 GLEAN promoter 209658 210657 0.761819 - . ID=CGI_10025247; scaffold82 WUBlastX LINE_CR1-L2 213923 215800 370 - . . scaffold82 WUBlastX LINE_L2 214904 215809 559 - . . scaffold82 TRF Tandem_Repeat 220284 220347 121 + . . scaffold82 GLEAN mRNA 221232 228542 0.999447 - . ID=CGI_10025249; scaffold82 GLEAN promoter 228543 229542 0.999447 - . ID=CGI_10025249; scaffold82 GLEAN promoter 233263 234262 0.999999 + . ID=CGI_10025250; scaffold82 TRF Tandem_Repeat 234112 234153 84 + . . scaffold82 GLEAN mRNA 234263 236766 0.999999 + . ID=CGI_10025250; scaffold82 GLEAN mRNA 237967 247488 1 - . ID=CGI_10025251; scaffold82 GLEAN promoter 247489 248488 1 - . ID=CGI_10025251; scaffold82 TRF Tandem_Repeat 248794 248820 54 + . . scaffold82 TRF Tandem_Repeat 250069 250114 92 + . . scaffold82 GLEAN promoter 271167 272166 0.994575 + . ID=CGI_10025252; scaffold82 GLEAN mRNA 272167 273067 0.994575 + . ID=CGI_10025252; scaffold82 TRF Tandem_Repeat 272283 272417 135 + . . scaffold82 TRF Tandem_Repeat 272291 272417 154 + . . scaffold82 WUBlastX DNA_Sola 272495 273016 124 + . . scaffold82 TRF Tandem_Repeat 274392 274479 131 + . . scaffold82 TRF Tandem_Repeat 274392 274479 131 + . . scaffold82 TRF Tandem_Repeat 286448 286497 73 + . . scaffold82 GLEAN promoter 289004 290003 0.360476 + . ID=CGI_10025253; scaffold82 GLEAN mRNA 290004 295192 0.360476 + . ID=CGI_10025253; scaffold82 GLEAN mRNA 297826 305129 0.889787 - . ID=CGI_10025254; scaffold82 GLEAN promoter 305130 306129 0.889787 - . ID=CGI_10025254; scaffold82 TRF Tandem_Repeat 305711 306106 441 + . . scaffold82 GLEAN mRNA 307937 308880 1 - . ID=CGI_10025255; scaffold82 GLEAN promoter 308881 309880 1 - . ID=CGI_10025255; scaffold82 GLEAN promoter 311439 312438 0.958866 + . ID=CGI_10025256; scaffold82 TRF Tandem_Repeat 312290 312343 101 + . . scaffold82 GLEAN mRNA 312439 314498 0.958866 + . ID=CGI_10025256; scaffold82 GLEAN promoter 318310 319309 1 + . ID=CGI_10025257; scaffold82 GLEAN mRNA 319310 324160 1 + . ID=CGI_10025257; scaffold82 TRF Tandem_Repeat 324249 324412 114 + . . scaffold82 GLEAN mRNA 328646 341573 0.999676 - . ID=CGI_10025258; scaffold82 GLEAN promoter 341574 342573 0.999676 - . ID=CGI_10025258; scaffold82 TRF Tandem_Repeat 350488 350562 150 + . . scaffold82 WUBlastX LINE_RTE-X 351535 351705 79 - . . scaffold82 TRF Tandem_Repeat 351755 351874 96 + . . scaffold82 TRF Tandem_Repeat 351767 351875 93 + . . scaffold82 TRF Tandem_Repeat 351796 351892 90 + . . scaffold82 TRF Tandem_Repeat 351815 351901 77 + . . scaffold82 GLEAN promoter 352523 353522 0.835367 + . ID=CGI_10025259; scaffold82 TRF Tandem_Repeat 352616 352652 74 + . . scaffold82 GLEAN mRNA 353523 363345 0.835367 + . ID=CGI_10025259; scaffold82 TRF Tandem_Repeat 365391 365429 78 + . . scaffold82 GLEAN promoter 368119 369118 0.903983 + . ID=CGI_10025260; scaffold82 GLEAN mRNA 369119 383016 0.903983 + . ID=CGI_10025260; scaffold82 GLEAN mRNA 388521 397546 0.992007 - . ID=CGI_10025261; scaffold82 TRF Tandem_Repeat 393702 393760 50 + . . scaffold82 GLEAN promoter 397547 398546 0.992007 - . ID=CGI_10025261; scaffold82 GLEAN promoter 417489 418488 0.843729 + . ID=CGI_10025263; scaffold82 TRF Tandem_Repeat 417667 417781 131 + . . scaffold82 TRF Tandem_Repeat 417976 418043 118 + . . scaffold82 GLEAN mRNA 418489 427562 0.843729 + . ID=CGI_10025263; scaffold82 TRF Tandem_Repeat 427690 427734 72 + . . scaffold82 TRF Tandem_Repeat 427939 429020 1562 + . . scaffold82 TRF Tandem_Repeat 449486 450837 1410 + . . scaffold82 TRF Tandem_Repeat 452399 452458 120 + . . scaffold82 TRF Tandem_Repeat 465689 465879 94 + . . scaffold82 WUBlastX LTR_Gypsy 474322 475725 883 + . . scaffold82 WUBlastX LTR_Gypsy 475704 475841 101 + . . scaffold82 WUBlastX LTR_Gypsy 475704 475811 114 + . . scaffold82 TRF Tandem_Repeat 482648 484011 1242 + . . scaffold82 TRF Tandem_Repeat 488389 488442 108 + . . scaffold82 WUBlastX DNA_IS4EU 494605 495234 187 - . . scaffold82 WUBlastX DNA_IS4EU 494623 495480 57 - . . scaffold82 WUBlastX DNA_IS4EU 496072 496233 50 - . . scaffold82 WUBlastX DNA_IS4EU 496099 496260 52 - . . scaffold82 WUBlastX DNA_IS4EU 496992 497306 108 - . . scaffold82 TRF Tandem_Repeat 502181 502958 812 + . . scaffold82 TRF Tandem_Repeat 502969 504200 1043 + . . scaffold82 TRF Tandem_Repeat 507249 507298 100 + . . scaffold82 WUBlastX LTR_Ngaro 517426 518328 430 - . . scaffold82 WUBlastX LTR_Ngaro 518298 519899 1030 - . . scaffold82 WUBlastX LTR_Gypsy 519090 520043 40 - . . scaffold82 WUBlastX LTR_Ngaro 520090 520596 57 - . . scaffold82 WUBlastX LTR_Ngaro 520222 520983 192 - . . scaffold82 TRF Tandem_Repeat 526446 526509 101 + . . scaffold82 GLEAN promoter 537239 538238 0.558406 + . ID=CGI_10025264; scaffold82 GLEAN mRNA 538239 549916 0.558406 + . ID=CGI_10025264; scaffold82 TRF Tandem_Repeat 545322 545687 268 + . . scaffold82 GLEAN mRNA 555436 563532 1 - . ID=CGI_10025265; scaffold82 WUBlastX LINE_RTE-X 556448 557005 116 - . . scaffold82 WUBlastX LINE_RTE-X 556574 557023 133 - . . scaffold82 GLEAN promoter 563533 564532 1 - . ID=CGI_10025265; scaffold82 GLEAN mRNA 565550 569338 0.999715 - . ID=CGI_10025266; scaffold82 GLEAN promoter 569339 570338 0.999715 - . ID=CGI_10025266; scaffold82 WUBlastX LTR_Pao 571287 572459 1195 - . . scaffold82 WUBlastX LTR_Pao 572049 572591 150 - . . scaffold82 WUBlastX LTR_Pao 572484 572876 55 - . . scaffold82 WUBlastX LTR_Pao 572658 577130 620 - . . scaffold82 WUBlastX LTR_Pao 572670 576425 2032 - . . scaffold82 WUBlastX LTR_Pao 575526 577535 318 - . . scaffold82 TRF Tandem_Repeat 580331 580366 54 + . . scaffold82 TRF Tandem_Repeat 591593 591659 89 + . . scaffold82 TRF Tandem_Repeat 594329 594357 58 + . . scaffold82 TRF Tandem_Repeat 594355 594398 88 + . . scaffold82 TRF Tandem_Repeat 594893 594959 71 + . . scaffold82 WUBlastX LINE_CR1 602070 602543 116 + . . scaffold82 WUBlastX LINE_L2 602193 602588 155 + . . scaffold82 WUBlastX LINE_I 602202 602798 59 + . . scaffold82 WUBlastX LINE_L2 602268 602549 172 + . . scaffold82 WUBlastX LINE_CR1 602280 602654 93 + . . scaffold82 TRF Tandem_Repeat 603889 603946 79 + . . scaffold82 TRF Tandem_Repeat 622647 622678 64 + . . scaffold82 WUBlastX LTR_Pao 630117 632414 1045 - . . scaffold82 WUBlastX LTR_Pao 630693 632423 1163 - . . scaffold82 WUBlastX LTR_Pao 632423 633265 223 - . . scaffold82 WUBlastX LTR_Pao 632426 633661 58 - . . scaffold82 WUBlastX DNA_IS4EU 634660 634911 50 - . . scaffold82 WUBlastX DNA_IS4EU 635138 635332 69 - . . scaffold82 TRF Tandem_Repeat 639875 640115 236 + . . scaffold82 TRF Tandem_Repeat 640142 640334 161 + . . scaffold82 TRF Tandem_Repeat 640142 640334 181 + . . scaffold82 TRF Tandem_Repeat 643656 643736 162 + . . scaffold82 TRF Tandem_Repeat 670789 670840 97 + . . scaffold82 GLEAN mRNA 671230 690151 0.999877 - . ID=CGI_10025267; scaffold82 TRF Tandem_Repeat 685173 685199 54 + . . scaffold82 WUBlastX LINE_L1-Tx1 686689 687372 148 - . . scaffold82 WUBlastX LINE_L1 687055 687429 105 - . . scaffold82 WUBlastX LINE_L1-Tx1 687420 687830 79 - . . scaffold82 WUBlastX LINE_L1-Tx1 687516 687845 169 - . . scaffold82 WUBlastX LINE_L1-Tx1 687827 688393 197 - . . scaffold82 WUBlastX LINE_L1 688407 688580 23 - . . scaffold82 WUBlastX LINE_L1 688533 688589 36 - . . scaffold82 WUBlastX LINE_L1-Tx1 688533 688580 38 - . . scaffold82 WUBlastX LINE_L1-Tx1 688612 688911 89 - . . scaffold82 WUBlastX LINE_RTE-BovB 688852 688929 20 - . . scaffold82 WUBlastX LINE_L1-Tx1 688929 689171 152 - . . scaffold82 WUBlastX LINE_L1 688941 689228 55 - . . scaffold82 GLEAN promoter 690152 691151 0.999877 - . ID=CGI_10025267; scaffold82 TRF Tandem_Repeat 724365 724456 78 + . . scaffold82 GLEAN mRNA 743361 754636 0.569957 - . ID=CGI_10025268; scaffold82 TRF Tandem_Repeat 745263 745296 59 + . . scaffold82 TRF Tandem_Repeat 750693 750724 55 + . . scaffold82 WUBlastX DNA_Kolobok 753815 753946 58 + . . scaffold82 WUBlastX DNA_Kolobok 754358 754498 36 - . . scaffold82 GLEAN promoter 754637 755636 0.569957 - . ID=CGI_10025268; scaffold82 WUBlastX DNA_Kolobok 754638 754766 54 - . . scaffold82 WUBlastX DNA_Kolobok 754895 755107 47 - . . scaffold82 WUBlastX DNA_Kolobok 754934 755098 50 - . . scaffold82 WUBlastX DNA_Kolobok 755700 756089 97 - . . scaffold82 GLEAN mRNA 762447 767156 0.819798 - . ID=CGI_10025269; scaffold82 TRF Tandem_Repeat 766215 766249 70 + . . scaffold82 TRF Tandem_Repeat 766557 766588 55 + . . scaffold82 TRF Tandem_Repeat 766730 766769 71 + . . scaffold82 TRF Tandem_Repeat 766860 766902 86 + . . scaffold82 GLEAN promoter 767157 768156 0.819798 - . ID=CGI_10025269; scaffold82 TRF Tandem_Repeat 769995 770206 388 + . . scaffold82 WUBlastX DNA_Helitron 771161 771580 62 + . . scaffold82 WUBlastX RC_Helitron 771781 771882 41 + . . scaffold82 WUBlastX RC_Helitron 771802 772098 45 + . . scaffold82 WUBlastX RC_Helitron 772079 772573 136 + . . scaffold82 WUBlastX RC_Helitron 772172 772654 140 + . . scaffold82 TRF Tandem_Repeat 778294 778366 146 + . . scaffold82 TRF Tandem_Repeat 782526 782602 154 + . . scaffold82 TRF Tandem_Repeat 788447 788517 142 + . . scaffold82 GLEAN mRNA 788616 797560 0.632952 - . ID=CGI_10025270; scaffold82 TRF Tandem_Repeat 791205 791316 92 + . . scaffold82 TRF Tandem_Repeat 791346 791523 138 + . . scaffold82 TRF Tandem_Repeat 791428 791523 97 + . . scaffold82 GLEAN promoter 797561 798560 0.632952 - . ID=CGI_10025270; scaffold82 TRF Tandem_Repeat 800999 801104 196 + . . scaffold82 TRF Tandem_Repeat 802505 802589 170 + . . scaffold82 GLEAN promoter 804818 805817 1 + . ID=CGI_10025271; scaffold82 GLEAN mRNA 805818 810857 1 + . ID=CGI_10025271; scaffold82 TRF Tandem_Repeat 814017 814390 266 + . . scaffold82 TRF Tandem_Repeat 814017 814389 337 + . . scaffold82 GLEAN promoter 815381 816380 0.97453 + . ID=CGI_10025272; scaffold82 GLEAN mRNA 816381 821683 0.97453 + . ID=CGI_10025272; scaffold82 TRF Tandem_Repeat 825034 825119 72 + . . scaffold82 TRF Tandem_Repeat 825170 825216 94 + . . scaffold82 TRF Tandem_Repeat 825553 825596 79 + . . scaffold82 TRF Tandem_Repeat 825685 825730 92 + . . scaffold82 TRF Tandem_Repeat 826563 826673 113 + . . scaffold82 TRF Tandem_Repeat 827167 827273 97 + . . scaffold82 GLEAN promoter 827796 828795 0.999719 + . ID=CGI_10025273; scaffold82 GLEAN mRNA 828796 842788 0.999719 + . ID=CGI_10025273; scaffold82 TRF Tandem_Repeat 835981 836052 135 + . . scaffold82 TRF Tandem_Repeat 842267 842328 106 + . . scaffold82 GLEAN promoter 848256 849255 0.894222 + . ID=CGI_10025274; scaffold82 GLEAN mRNA 849256 865561 0.894222 + . ID=CGI_10025274; scaffold82 GLEAN mRNA 854560 856370 0.999998 - . ID=CGI_10025275; scaffold82 GLEAN promoter 856371 857370 0.999998 - . ID=CGI_10025275; scaffold82 TRF Tandem_Repeat 860314 860355 84 + . . scaffold82 TRF Tandem_Repeat 860482 860537 112 + . . scaffold82 GLEAN mRNA 869655 870746 0.793229 - . ID=CGI_10025276; scaffold82 GLEAN promoter 870747 871746 0.793229 - . ID=CGI_10025276; scaffold82 GLEAN mRNA 884888 892683 0.853559 - . ID=CGI_10025277; scaffold82 GLEAN promoter 892684 893683 0.853559 - . ID=CGI_10025277; scaffold82 TRF Tandem_Repeat 894468 894647 62 + . . scaffold82 TRF Tandem_Repeat 894568 894652 82 + . . scaffold82 GLEAN mRNA 900394 912480 0.853942 - . ID=CGI_10025278; scaffold82 TRF Tandem_Repeat 910020 910126 142 + . . scaffold82 TRF Tandem_Repeat 911614 911759 112 + . . scaffold82 TRF Tandem_Repeat 911635 911759 133 + . . scaffold82 GLEAN promoter 912481 913480 0.853942 - . ID=CGI_10025278; scaffold82 TRF Tandem_Repeat 924757 925009 188 + . . scaffold82 TRF Tandem_Repeat 929022 929046 50 + . . scaffold82 WUBlastX LINE_RTE-X 932348 932578 49 - . . scaffold82 WUBlastX LINE_RTE-X 932405 932563 57 - . . scaffold82 TRF Tandem_Repeat 939721 939784 128 + . . scaffold82 GLEAN promoter 942048 943047 0.999614 + . ID=CGI_10025279; scaffold82 TRF Tandem_Repeat 942874 942928 110 + . . scaffold82 GLEAN mRNA 943048 953629 0.999614 + . ID=CGI_10025279; scaffold82 TRF Tandem_Repeat 950522 951516 1659 + . . scaffold82 TRF Tandem_Repeat 950522 951847 1740 + . . scaffold82 TRF Tandem_Repeat 950522 951847 1740 + . . scaffold82 TRF Tandem_Repeat 951555 951678 131 + . . scaffold82 TRF Tandem_Repeat 951684 951861 137 + . . scaffold82 GLEAN mRNA 955814 1001301 0.790112 - . ID=CGI_10025280; scaffold82 TRF Tandem_Repeat 968917 968956 62 + . . scaffold82 TRF Tandem_Repeat 975971 976198 320 + . . scaffold82 TRF Tandem_Repeat 978536 978585 75 + . . scaffold82 TRF Tandem_Repeat 980353 980629 491 + . . scaffold82 TRF Tandem_Repeat 988055 988589 528 + . . scaffold82 TRF Tandem_Repeat 990940 991632 1223 + . . scaffold82 GLEAN promoter 1001302 1002301 0.790112 - . ID=CGI_10025280; scaffold82 TRF Tandem_Repeat 1003374 1003437 76 + . . scaffold82 WUBlastX LINE_RTE-BovB 1006221 1006403 89 - . . scaffold82 WUBlastX LINE_RTE-X 1010319 1010801 93 - . . scaffold82 GLEAN promoter 1015559 1016558 0.93066 + . ID=CGI_10025281; scaffold82 GLEAN mRNA 1016559 1039215 0.93066 + . ID=CGI_10025281; scaffold82 TRF Tandem_Repeat 1017496 1017586 59 + . . scaffold82 TRF Tandem_Repeat 1033254 1033288 63 + . . scaffold82 WUBlastX LINE_L1-Tx1 1040357 1040761 25 + . . scaffold82 WUBlastX LINE_L1 1040471 1040746 33 + . . scaffold82 TRF Tandem_Repeat 1052036 1052464 691 + . . scaffold82 TRF Tandem_Repeat 1054419 1054488 140 + . . scaffold820 TRF Tandem_Repeat 2302 2639 419 + . . scaffold820 TRF Tandem_Repeat 3508 4470 1117 + . . scaffold820 WUBlastX LTR_Gypsy 9098 10081 23 - . . scaffold820 WUBlastX LTR_Gypsy 10314 11969 655 - . . scaffold820 WUBlastX LTR_Copia 11859 11990 25 - . . scaffold823 TRF Tandem_Repeat 1348 1381 59 + . . scaffold823 TRF Tandem_Repeat 6745 6782 67 + . . scaffold823 TRF Tandem_Repeat 19626 19708 166 + . . scaffold823 TRF Tandem_Repeat 24943 24983 82 + . . scaffold823 WUBlastX LTR_Ngaro 38671 38838 21 + . . scaffold823 WUBlastX LTR_Ngaro 39465 39581 33 + . . scaffold823 WUBlastX LTR_Ngaro 39604 39786 46 + . . scaffold823 WUBlastX LTR_Ngaro 39786 39968 74 + . . scaffold823 TRF Tandem_Repeat 44192 45185 1011 + . . scaffold823 GLEAN mRNA 49313 67666 0.999676 - . ID=CGI_10004169; scaffold823 WUBlastX LTR_Gypsy 59441 59995 386 + . . scaffold823 WUBlastX LTR_Gypsy 59986 60549 473 + . . scaffold823 TRF Tandem_Repeat 65224 65336 115 + . . scaffold823 GLEAN promoter 67667 68666 0.999676 - . ID=CGI_10004169; scaffold823 GLEAN mRNA 71655 73385 0.999675 - . ID=CGI_10004170; scaffold823 GLEAN promoter 73386 74385 0.999675 - . ID=CGI_10004170; scaffold823 TRF Tandem_Repeat 81593 81626 68 + . . scaffold823 TRF Tandem_Repeat 83211 83305 110 + . . scaffold823 TRF Tandem_Repeat 86966 87039 78 + . . scaffold823 WUBlastX LINE_RTE-X 88796 89299 83 + . . scaffold823 WUBlastX LINE_RTE-X 88886 89419 138 + . . scaffold823 WUBlastX LTR_DIRS 91509 92570 188 + . . scaffold823 WUBlastX LTR_DIRS 92004 92612 199 + . . scaffold823 WUBlastX LTR_DIRS 92525 93076 341 + . . scaffold825 GLEAN mRNA 7595 7816 1 - . ID=CGI_10012699; scaffold825 GLEAN promoter 7817 8816 1 - . ID=CGI_10012699; scaffold825 TRF Tandem_Repeat 30900 31144 102 + . . scaffold825 TRF Tandem_Repeat 35940 35967 56 + . . scaffold825 TRF Tandem_Repeat 36494 36527 68 + . . scaffold825 TRF Tandem_Repeat 36787 36827 82 + . . scaffold825 TRF Tandem_Repeat 37099 37162 69 + . . scaffold825 GLEAN promoter 37174 38173 0.506798 + . ID=CGI_10012700; scaffold825 TRF Tandem_Repeat 37846 37874 58 + . . scaffold825 GLEAN mRNA 38174 39499 0.506798 + . ID=CGI_10012700; scaffold825 TRF Tandem_Repeat 41600 41624 50 + . . scaffold825 WUBlastX DNA_Merlin 60816 61565 368 - . . scaffold825 TRF Tandem_Repeat 62980 63029 66 + . . scaffold825 TRF Tandem_Repeat 64795 65875 1366 + . . scaffold825 GLEAN promoter 67070 68069 0.920519 + . ID=CGI_10012702; scaffold825 GLEAN mRNA 67384 67626 0.618195 - . ID=CGI_10012701; scaffold825 GLEAN promoter 67627 68626 0.618195 - . ID=CGI_10012701; scaffold825 GLEAN mRNA 68070 69107 0.920519 + . ID=CGI_10012702; scaffold825 TRF Tandem_Repeat 73174 73231 116 + . . scaffold825 TRF Tandem_Repeat 75150 75174 50 + . . scaffold825 TRF Tandem_Repeat 78068 78153 102 + . . scaffold825 TRF Tandem_Repeat 84560 84618 111 + . . scaffold825 WUBlastX LINE_L1 87186 87323 32 - . . scaffold825 WUBlastX LINE_L1-Tx1 87207 90410 1108 - . . scaffold825 WUBlastX LINE_L1-Tx1 90407 90778 214 - . . scaffold825 WUBlastX LINE_L1-Tx1 90413 90847 83 - . . scaffold825 GLEAN mRNA 91133 91663 0.99997 - . ID=CGI_10012703; scaffold825 GLEAN promoter 91664 92663 0.99997 - . ID=CGI_10012703; scaffold825 GLEAN mRNA 93891 98874 1 - . ID=CGI_10012704; scaffold825 TRF Tandem_Repeat 96752 96790 78 + . . scaffold825 TRF Tandem_Repeat 97816 97859 88 + . . scaffold825 GLEAN promoter 98875 99874 1 - . ID=CGI_10012704; scaffold825 WUBlastX LTR_DIRS 99273 99587 116 - . . scaffold825 WUBlastX LTR_DIRS 99603 101051 780 - . . scaffold825 WUBlastX LTR_DIRS 101057 101455 357 - . . scaffold825 WUBlastX LTR_Gypsy 101063 101635 34 - . . scaffold825 WUBlastX LTR_DIRS 101063 101536 64 - . . scaffold825 WUBlastX LTR_DIRS 102271 103098 230 - . . scaffold825 WUBlastX LINE_CR1-L2 103466 103834 64 + . . scaffold825 WUBlastX LINE_RTE-X 103580 104593 425 + . . scaffold825 WUBlastX LINE_RTE-X 104587 105087 77 + . . scaffold825 WUBlastX LINE_RTE-X 104593 104949 93 + . . scaffold825 GLEAN mRNA 107602 120026 0.634689 - . ID=CGI_10012705; scaffold825 TRF Tandem_Repeat 110453 112219 3381 + . . scaffold825 TRF Tandem_Repeat 114354 114386 66 + . . scaffold825 WUBlastX LTR_Ngaro 118445 119245 220 + . . scaffold825 WUBlastX LTR_Ngaro 119236 119283 20 + . . scaffold825 GLEAN promoter 120027 121026 0.634689 - . ID=CGI_10012705; scaffold825 GLEAN mRNA 122114 140840 0.940944 - . ID=CGI_10012706; scaffold825 TRF Tandem_Repeat 129905 130682 1122 + . . scaffold825 TRF Tandem_Repeat 131721 131747 54 + . . scaffold825 TRF Tandem_Repeat 133044 133079 54 + . . scaffold825 TRF Tandem_Repeat 137914 138007 134 + . . scaffold825 TRF Tandem_Repeat 138056 138154 148 + . . scaffold825 GLEAN promoter 140841 141840 0.940944 - . ID=CGI_10012706; scaffold825 GLEAN mRNA 140871 152354 0.843446 - . ID=CGI_10012707; scaffold825 TRF Tandem_Repeat 147143 147230 142 + . . scaffold825 GLEAN promoter 152355 153354 0.843446 - . ID=CGI_10012707; scaffold825 GLEAN mRNA 152904 157433 0.999676 - . ID=CGI_10012708; scaffold825 TRF Tandem_Repeat 155276 155312 74 + . . scaffold825 GLEAN promoter 157434 158433 0.999676 - . ID=CGI_10012708; scaffold825 GLEAN mRNA 160691 177322 0.957388 - . ID=CGI_10012709; scaffold825 TRF Tandem_Repeat 172441 172484 79 + . . scaffold825 GLEAN promoter 177323 178322 0.957388 - . ID=CGI_10012709; scaffold825 GLEAN mRNA 178144 182286 0.999676 - . ID=CGI_10012710; scaffold825 TRF Tandem_Repeat 178852 178879 56 + . . scaffold825 GLEAN promoter 182287 183286 0.999676 - . ID=CGI_10012710; scaffold825 GLEAN mRNA 185750 186022 1 - . ID=CGI_10012711; scaffold825 GLEAN promoter 186023 187022 1 - . ID=CGI_10012711; scaffold825 TRF Tandem_Repeat 186445 186541 187 + . . scaffold825 TRF Tandem_Repeat 193158 193282 112 + . . scaffold825 GLEAN promoter 193651 194650 0.998225 + . ID=CGI_10012712; scaffold825 GLEAN mRNA 194651 220674 0.998225 + . ID=CGI_10012712; scaffold825 TRF Tandem_Repeat 196572 196615 88 + . . scaffold825 TRF Tandem_Repeat 196679 196720 84 + . . scaffold825 WUBlastX LINE_L1-Tx1 197046 197501 38 - . . scaffold825 WUBlastX LINE_L1-Tx1 197046 197429 64 - . . scaffold825 TRF Tandem_Repeat 200073 200113 55 + . . scaffold825 TRF Tandem_Repeat 200819 201104 216 + . . scaffold825 TRF Tandem_Repeat 201992 202309 530 + . . scaffold825 GLEAN promoter 232940 233939 0.881408 + . ID=CGI_10012713; scaffold825 GLEAN mRNA 233940 240386 0.881408 + . ID=CGI_10012713; scaffold825 TRF Tandem_Repeat 236995 237028 68 + . . scaffold825 WUBlastX LTR_Copia 237174 237311 32 + . . scaffold825 GLEAN mRNA 241324 246750 1 - . ID=CGI_10012714; scaffold825 WUBlastX LTR_Ngaro 242978 243289 88 + . . scaffold825 GLEAN promoter 246751 247750 1 - . ID=CGI_10012714; scaffold825 GLEAN mRNA 247249 253906 1 - . ID=CGI_10012715; scaffold825 GLEAN promoter 253068 254067 0.542821 + . ID=CGI_10012716; scaffold825 GLEAN promoter 253907 254906 1 - . ID=CGI_10012715; scaffold825 GLEAN mRNA 254068 267580 0.542821 + . ID=CGI_10012716; scaffold825 TRF Tandem_Repeat 262654 263238 648 + . . scaffold825 TRF Tandem_Repeat 269638 269684 94 + . . scaffold825 GLEAN mRNA 270166 281496 0.6511 - . ID=CGI_10012717; scaffold825 GLEAN promoter 281497 282496 0.6511 - . ID=CGI_10012717; scaffold825 GLEAN mRNA 287443 298229 1 - . ID=CGI_10012718; scaffold825 TRF Tandem_Repeat 294806 294842 65 + . . scaffold825 TRF Tandem_Repeat 294841 294871 62 + . . scaffold825 GLEAN promoter 298230 299229 1 - . ID=CGI_10012718; scaffold825 GLEAN mRNA 303996 304184 1 - . ID=CGI_10012719; scaffold825 GLEAN promoter 304185 305184 1 - . ID=CGI_10012719; scaffold825 GLEAN promoter 305745 306744 0.647845 + . ID=CGI_10012720; scaffold825 GLEAN mRNA 306745 324395 0.647845 + . ID=CGI_10012720; scaffold825 TRF Tandem_Repeat 327432 328688 1592 + . . scaffold825 TRF Tandem_Repeat 329810 329834 50 + . . scaffold825 TRF Tandem_Repeat 329834 329882 98 + . . scaffold826 GLEAN mRNA 202 10326 0.764735 - . ID=CGI_10000838; scaffold826 GLEAN promoter 10327 10802 0.764735 - . ID=CGI_10000838; scaffold827 GLEAN mRNA 1774 15096 0.999949 - . ID=CGI_10007008; scaffold827 GLEAN promoter 15097 16096 0.999949 - . ID=CGI_10007008; scaffold827 WUBlastX DNA_TcMar-Tc1 29098 29805 280 + . . scaffold827 WUBlastX DNA_TcMar-Tc1 29757 30071 134 + . . scaffold827 WUBlastX LINE_L1-Tx1 30748 31395 230 + . . scaffold827 WUBlastX LINE_L1-Tx1 30802 31344 308 + . . scaffold827 WUBlastX LINE_L1-Tx1 31349 32503 185 + . . scaffold827 WUBlastX LINE_L1-Tx1 32518 32634 20 + . . scaffold827 TRF Tandem_Repeat 33008 33062 110 + . . scaffold827 TRF Tandem_Repeat 33213 33252 64 + . . scaffold827 TRF Tandem_Repeat 33418 34373 1330 + . . scaffold827 TRF Tandem_Repeat 36056 36161 182 + . . scaffold827 WUBlastX LINE_RTE-X 45663 47156 296 - . . scaffold827 WUBlastX LINE_RTE-X 46053 47372 308 - . . scaffold827 WUBlastX LINE_CR1 47374 47535 31 - . . scaffold827 WUBlastX LINE_Proto2 47519 48538 67 - . . scaffold827 WUBlastX LINE_Proto2 47534 48391 125 - . . scaffold827 WUBlastX LINE_Proto2 48776 48997 65 - . . scaffold827 WUBlastX LINE_I 49004 49060 21 - . . scaffold827 GLEAN mRNA 49030 49467 0.615967 - . ID=CGI_10007009; scaffold827 GLEAN promoter 49468 50467 0.615967 - . ID=CGI_10007009; scaffold827 GLEAN mRNA 63309 72074 0.443585 - . ID=CGI_10007010; scaffold827 GLEAN promoter 72075 73074 0.443585 - . ID=CGI_10007010; scaffold827 GLEAN mRNA 72589 87805 0.73088 - . ID=CGI_10007011; scaffold827 TRF Tandem_Repeat 73671 73719 64 + . . scaffold827 TRF Tandem_Repeat 73676 73718 50 + . . scaffold827 GLEAN promoter 87806 88805 0.73088 - . ID=CGI_10007011; scaffold827 TRF Tandem_Repeat 90480 90509 60 + . . scaffold827 TRF Tandem_Repeat 95470 95523 99 + . . scaffold827 TRF Tandem_Repeat 99750 99784 70 + . . scaffold827 TRF Tandem_Repeat 99782 99849 129 + . . scaffold827 GLEAN promoter 102077 103076 0.999674 + . ID=CGI_10007012; scaffold827 GLEAN mRNA 103077 115501 0.999674 + . ID=CGI_10007012; scaffold827 TRF Tandem_Repeat 109961 110010 91 + . . scaffold827 TRF Tandem_Repeat 111518 111561 70 + . . scaffold827 GLEAN mRNA 118327 151532 0.778909 - . ID=CGI_10007013; scaffold827 TRF Tandem_Repeat 149607 150395 1106 + . . scaffold827 GLEAN promoter 151533 152532 0.778909 - . ID=CGI_10007013; scaffold827 GLEAN promoter 152686 153685 0.999961 + . ID=CGI_10007014; scaffold827 GLEAN mRNA 153686 158336 0.999961 + . ID=CGI_10007014; scaffold827 GLEAN mRNA 163135 163338 0.33619 - . ID=CGI_10007015; scaffold827 GLEAN promoter 163339 164338 0.33619 - . ID=CGI_10007015; scaffold828 GLEAN mRNA 692 9903 0.999675 - . ID=CGI_10007361; scaffold828 TRF Tandem_Repeat 4086 4236 142 + . . scaffold828 TRF Tandem_Repeat 4140 4384 308 + . . scaffold828 GLEAN promoter 9904 10903 0.999675 - . ID=CGI_10007361; scaffold828 GLEAN promoter 10982 11981 1 + . ID=CGI_10007362; scaffold828 GLEAN mRNA 11982 13856 1 + . ID=CGI_10007362; scaffold828 TRF Tandem_Repeat 13856 14065 375 + . . scaffold828 GLEAN promoter 13899 14898 0.999674 + . ID=CGI_10007363; scaffold828 GLEAN mRNA 14899 24499 0.999674 + . ID=CGI_10007363; scaffold828 GLEAN mRNA 15085 78014 0.596994 - . ID=CGI_10007364; scaffold828 TRF Tandem_Repeat 17095 17237 162 + . . scaffold828 TRF Tandem_Repeat 17232 17332 103 + . . scaffold828 TRF Tandem_Repeat 17966 18177 157 + . . scaffold828 TRF Tandem_Repeat 18002 18146 114 + . . scaffold828 TRF Tandem_Repeat 18533 18923 284 + . . scaffold828 TRF Tandem_Repeat 18563 18923 106 + . . scaffold828 WUBlastX LINE_L1-Tx1 21183 22046 90 - . . scaffold828 TRF Tandem_Repeat 24214 24249 54 + . . scaffold828 TRF Tandem_Repeat 35597 35639 86 + . . scaffold828 TRF Tandem_Repeat 48383 48534 65 + . . scaffold828 TRF Tandem_Repeat 52812 52843 55 + . . scaffold828 WUBlastX LINE_L2 53549 53971 45 + . . scaffold828 WUBlastX LINE_L2 53717 53971 76 + . . scaffold828 WUBlastX LINE_L2 53732 53923 76 + . . scaffold828 WUBlastX LINE_L2 53762 54010 43 + . . scaffold828 WUBlastX LINE_L1 54463 54657 116 + . . scaffold828 WUBlastX DNA_TcMar-Tc2 58405 59322 143 - . . scaffold828 WUBlastX DNA_TcMar-Tc2 58582 59598 196 - . . scaffold828 WUBlastX DNA_TcMar-Tc2 58591 59280 197 - . . scaffold828 WUBlastX LINE_L2 74830 75552 97 + . . scaffold828 WUBlastX LINE_L1-Tx1 75632 76267 344 + . . scaffold828 WUBlastX LINE_L1-Tx1 75713 77839 341 + . . scaffold828 WUBlastX LINE_L1-Tx1 76766 77839 777 + . . scaffold828 GLEAN promoter 78015 79014 0.596994 - . ID=CGI_10007364; scaffold828 GLEAN mRNA 78778 92221 0.986584 - . ID=CGI_10007365; scaffold828 TRF Tandem_Repeat 80573 80601 51 + . . scaffold828 WUBlastX LINE_L1-Tx1 80933 81091 22 - . . scaffold828 WUBlastX LINE_L1-Tx1 81866 82183 93 - . . scaffold828 WUBlastX LINE_L1-Tx1 81917 82186 145 - . . scaffold828 WUBlastX LINE_L1-Tx1 81920 82477 47 - . . scaffold828 TRF Tandem_Repeat 89965 90016 86 + . . scaffold828 WUBlastX LINE_RTE-X 90081 90281 86 + . . scaffold828 GLEAN promoter 92222 93221 0.986584 - . ID=CGI_10007365; scaffold828 GLEAN mRNA 93404 108093 0.999999 - . ID=CGI_10007366; scaffold828 WUBlastX LTR_Gypsy 95826 96260 31 - . . scaffold828 WUBlastX LTR_Gypsy 95908 95973 32 - . . scaffold828 WUBlastX LTR_Copia 95925 96194 62 - . . scaffold828 WUBlastX LTR_Gypsy 95976 97124 212 - . . scaffold828 WUBlastX LTR_Gypsy 96257 97891 216 - . . scaffold828 WUBlastX LTR_Gypsy 97448 97972 81 - . . scaffold828 WUBlastX LTR_Gypsy 97448 97891 222 - . . scaffold828 TRF Tandem_Repeat 99761 100455 1049 + . . scaffold828 TRF Tandem_Repeat 107537 107753 208 + . . scaffold828 GLEAN promoter 108094 109093 0.999999 - . ID=CGI_10007366; scaffold828 TRF Tandem_Repeat 114041 114090 100 + . . scaffold828 TRF Tandem_Repeat 116879 116903 50 + . . scaffold828 GLEAN mRNA 117220 117672 0.999999 - . ID=CGI_10007367; scaffold828 GLEAN promoter 117673 118672 0.999999 - . ID=CGI_10007367; scaffold828 WUBlastX LINE_RTE-X 119717 120088 55 - . . scaffold828 WUBlastX LINE_RTE-X 119843 120151 78 - . . scaffold828 TRF Tandem_Repeat 120570 120616 94 + . . scaffold828 WUBlastX DNA_Harbinger 129545 130027 155 + . . scaffold828 WUBlastX DNA_Harbinger 130042 130359 74 + . . scaffold828 WUBlastX DNA_Harbinger 130063 130332 112 + . . scaffold828 WUBlastX DNA_Harbinger 130072 130476 48 + . . scaffold828 TRF Tandem_Repeat 131857 133120 2138 + . . scaffold828 WUBlastX DNA_Harbinger 134096 134869 105 + . . scaffold828 WUBlastX DNA_Harbinger 134364 134591 121 + . . scaffold828 TRF Tandem_Repeat 142707 142762 85 + . . scaffold828 GLEAN promoter 154342 155341 0.980372 + . ID=CGI_10007369; scaffold828 GLEAN mRNA 155342 161256 0.980372 + . ID=CGI_10007369; scaffold828 TRF Tandem_Repeat 159435 159525 71 + . . scaffold828 TRF Tandem_Repeat 159732 159822 71 + . . scaffold828 TRF Tandem_Repeat 161971 162063 177 + . . scaffold828 GLEAN mRNA 167866 174886 0.999415 - . ID=CGI_10007370; scaffold828 WUBlastX DNA_IS4EU 171103 171381 20 - . . scaffold828 WUBlastX DNA_TcMar-Fot1 171297 172394 158 - . . scaffold828 WUBlastX DNA_TcMar-Fot1 171714 172358 199 - . . scaffold828 WUBlastX DNA_TcMar-Fot1 172390 172923 149 - . . scaffold828 GLEAN promoter 174887 175886 0.999415 - . ID=CGI_10007370; scaffold828 TRF Tandem_Repeat 176157 176219 73 + . . scaffold829 TRF Tandem_Repeat 5336 5369 68 + . . scaffold829 TRF Tandem_Repeat 7636 7685 100 + . . scaffold829 GLEAN mRNA 23963 31012 0.999676 - . ID=CGI_10021135; scaffold829 GLEAN promoter 31013 32012 0.999676 - . ID=CGI_10021135; scaffold829 GLEAN mRNA 42389 54940 0.481292 - . ID=CGI_10021136; scaffold829 TRF Tandem_Repeat 50507 50651 119 + . . scaffold829 TRF Tandem_Repeat 50509 50652 135 + . . scaffold829 GLEAN promoter 54941 55940 0.481292 - . ID=CGI_10021136; scaffold829 TRF Tandem_Repeat 66029 66053 50 + . . scaffold829 TRF Tandem_Repeat 67064 67254 215 + . . scaffold829 TRF Tandem_Repeat 67064 67254 215 + . . scaffold829 TRF Tandem_Repeat 68239 68504 281 + . . scaffold829 TRF Tandem_Repeat 68506 69356 870 + . . scaffold829 TRF Tandem_Repeat 70028 70061 52 + . . scaffold829 GLEAN promoter 76829 77828 0.448271 + . ID=CGI_10021137; scaffold829 GLEAN mRNA 77829 78275 0.448271 + . ID=CGI_10021137; scaffold829 GLEAN promoter 79262 80261 0.999999 + . ID=CGI_10021138; scaffold829 GLEAN mRNA 80262 81806 0.999999 + . ID=CGI_10021138; scaffold829 GLEAN mRNA 82186 82748 0.9999 - . ID=CGI_10021139; scaffold829 WUBlastX LINE_L2 82392 82772 49 - . . scaffold829 WUBlastX LINE_L1 82431 82748 52 - . . scaffold829 GLEAN promoter 82749 83748 0.9999 - . ID=CGI_10021139; scaffold829 GLEAN promoter 95076 96075 0.932887 + . ID=CGI_10021140; scaffold829 GLEAN mRNA 96076 100192 0.932887 + . ID=CGI_10021140; scaffold829 WUBlastX DNA_hAT-Tip100 99518 99745 61 - . . scaffold829 WUBlastX DNA_hAT-Tip100 99572 99745 143 - . . scaffold829 TRF Tandem_Repeat 116780 116844 130 + . . scaffold829 TRF Tandem_Repeat 155034 155062 58 + . . scaffold829 TRF Tandem_Repeat 157403 157454 52 + . . scaffold829 GLEAN mRNA 158272 160841 0.933804 - . ID=CGI_10021141; scaffold829 GLEAN promoter 160842 161841 0.933804 - . ID=CGI_10021141; scaffold829 TRF Tandem_Repeat 168264 168439 193 + . . scaffold829 TRF Tandem_Repeat 168264 168437 224 + . . scaffold829 TRF Tandem_Repeat 168264 168437 257 + . . scaffold829 TRF Tandem_Repeat 168674 168712 78 + . . scaffold829 TRF Tandem_Repeat 169169 169201 66 + . . scaffold829 TRF Tandem_Repeat 169436 169561 143 + . . scaffold829 WUBlastX LINE_CR1-L2 172120 172242 29 - . . scaffold829 WUBlastX LINE_L2 172751 173020 88 - . . scaffold829 TRF Tandem_Repeat 188188 188286 74 + . . scaffold829 GLEAN mRNA 189008 189778 0.999451 - . ID=CGI_10021142; scaffold829 GLEAN promoter 189779 190778 0.999451 - . ID=CGI_10021142; scaffold829 WUBlastX DNA_Crypton 190587 191000 84 - . . scaffold829 WUBlastX DNA_Crypton 191123 191293 53 - . . scaffold829 WUBlastX DNA_Crypton 191955 192227 59 - . . scaffold829 WUBlastX LINE_L2 195266 195838 84 + . . scaffold829 WUBlastX LINE_L1-Tx1 196251 196508 48 + . . scaffold829 WUBlastX LINE_L1-Tx1 196254 196424 53 + . . scaffold829 WUBlastX LINE_L1 196582 196935 184 + . . scaffold829 WUBlastX LINE_L1 196938 197483 37 + . . scaffold829 WUBlastX LINE_L1-Tx1 196938 197288 223 + . . scaffold829 WUBlastX LINE_L1 197582 197998 47 - . . scaffold829 WUBlastX LINE_L1-Tx1 197648 197968 110 - . . scaffold829 WUBlastX LINE_L1 197977 199068 132 - . . scaffold829 WUBlastX LINE_L1-Tx1 198169 199083 406 - . . scaffold829 TRF Tandem_Repeat 216807 217634 475 + . . scaffold829 TRF Tandem_Repeat 217132 217718 282 + . . scaffold829 WUBlastX DNA_TcMar-Tc2 231830 231994 122 + . . scaffold829 WUBlastX LINE_RTE-X 236846 237139 39 - . . scaffold829 WUBlastX LINE_RTE-X 237005 237217 42 - . . scaffold829 TRF Tandem_Repeat 250931 251146 242 + . . scaffold829 GLEAN promoter 268982 269981 0.986682 + . ID=CGI_10021143; scaffold829 GLEAN mRNA 269982 320010 0.986682 + . ID=CGI_10021143; scaffold829 TRF Tandem_Repeat 270786 270826 73 + . . scaffold829 TRF Tandem_Repeat 278404 279325 1237 + . . scaffold829 TRF Tandem_Repeat 301822 301879 116 + . . scaffold829 TRF Tandem_Repeat 304628 304707 54 + . . scaffold829 WUBlastX LINE_L1 327510 328010 72 + . . scaffold829 WUBlastX LINE_L1-Tx1 327645 328016 101 + . . scaffold829 WUBlastX LINE_L1-Tx1 327726 328037 171 + . . scaffold829 WUBlastX LINE_L1-Tx1 327985 328740 123 + . . scaffold829 WUBlastX LINE_L1-Tx1 328742 328969 184 + . . scaffold829 WUBlastX LINE_L1 328956 329411 115 + . . scaffold829 WUBlastX LINE_L1-Tx1 329061 329405 180 + . . scaffold829 WUBlastX LINE_L1-Tx1 329061 329492 120 + . . scaffold829 WUBlastX LTR_DIRS 329738 330130 63 + . . scaffold829 TRF Tandem_Repeat 340116 340909 1058 + . . scaffold829 WUBlastX LTR_Pao 372687 373214 555 + . . scaffold829 WUBlastX LTR_Pao 373220 373495 84 + . . scaffold829 WUBlastX LTR_Pao 373244 373474 206 + . . scaffold829 WUBlastX LTR_Pao 373519 373599 53 + . . scaffold829 WUBlastX LTR_Pao 373519 373617 28 + . . scaffold829 TRF Tandem_Repeat 380743 380798 103 + . . scaffold829 GLEAN promoter 390498 391497 0.6496 + . ID=CGI_10021144; scaffold829 GLEAN mRNA 391498 392181 0.6496 + . ID=CGI_10021144; scaffold829 WUBlastX LTR_Copia 395122 396564 964 - . . scaffold829 WUBlastX LTR_Copia 396579 396680 23 - . . scaffold829 TRF Tandem_Repeat 400856 400906 102 + . . scaffold829 TRF Tandem_Repeat 402304 402410 142 + . . scaffold829 TRF Tandem_Repeat 403635 403780 85 + . . scaffold829 TRF Tandem_Repeat 403669 403780 143 + . . scaffold829 GLEAN mRNA 430734 432569 0.481548 - . ID=CGI_10021145; scaffold829 GLEAN promoter 432570 433569 0.481548 - . ID=CGI_10021145; scaffold829 TRF Tandem_Repeat 436371 436409 78 + . . scaffold829 GLEAN mRNA 443405 454663 1 - . ID=CGI_10021146; scaffold829 TRF Tandem_Repeat 450037 450192 186 + . . scaffold829 TRF Tandem_Repeat 450080 450394 364 + . . scaffold829 TRF Tandem_Repeat 450190 450330 255 + . . scaffold829 TRF Tandem_Repeat 450203 450373 101 + . . scaffold829 GLEAN promoter 454664 455663 1 - . ID=CGI_10021146; scaffold829 GLEAN promoter 463392 464391 0.291672 + . ID=CGI_10021147; scaffold829 GLEAN mRNA 464392 481785 0.291672 + . ID=CGI_10021147; scaffold829 TRF Tandem_Repeat 464786 464846 122 + . . scaffold829 TRF Tandem_Repeat 468718 468793 89 + . . scaffold829 TRF Tandem_Repeat 468727 468793 71 + . . scaffold829 TRF Tandem_Repeat 471024 471057 59 + . . scaffold829 TRF Tandem_Repeat 471625 471684 75 + . . scaffold829 TRF Tandem_Repeat 476630 476655 52 + . . scaffold829 GLEAN promoter 484949 485948 0.706142 + . ID=CGI_10021148; scaffold829 WUBlastX LTR_Gypsy 485463 485699 91 + . . scaffold829 GLEAN mRNA 485949 486188 0.706142 + . ID=CGI_10021148; scaffold829 TRF Tandem_Repeat 486676 486762 113 + . . scaffold829 TRF Tandem_Repeat 487910 487953 79 + . . scaffold829 TRF Tandem_Repeat 491227 491290 119 + . . scaffold829 GLEAN mRNA 525665 533240 0.999107 - . ID=CGI_10021149; scaffold829 TRF Tandem_Repeat 527337 527392 103 + . . scaffold829 TRF Tandem_Repeat 527884 528826 1041 + . . scaffold829 TRF Tandem_Repeat 527884 528957 1237 + . . scaffold829 TRF Tandem_Repeat 527898 528929 917 + . . scaffold829 TRF Tandem_Repeat 527907 529007 813 + . . scaffold829 WUBlastX LINE_Jockey 530471 530668 25 - . . scaffold829 GLEAN promoter 533241 534240 0.999107 - . ID=CGI_10021149; scaffold829 TRF Tandem_Repeat 535524 535557 50 + . . scaffold829 TRF Tandem_Repeat 535527 535570 70 + . . scaffold829 GLEAN promoter 552993 553992 0.526421 + . ID=CGI_10021150; scaffold829 GLEAN mRNA 553993 555993 0.526421 + . ID=CGI_10021150; scaffold829 TRF Tandem_Repeat 555212 555250 60 + . . scaffold829 GLEAN promoter 564390 565389 0.817109 + . ID=CGI_10021151; scaffold829 GLEAN mRNA 565390 570348 0.817109 + . ID=CGI_10021151; scaffold829 TRF Tandem_Repeat 568564 569403 1290 + . . scaffold829 GLEAN promoter 576056 577055 0.812815 + . ID=CGI_10021152; scaffold829 GLEAN mRNA 577056 600770 0.812815 + . ID=CGI_10021152; scaffold829 TRF Tandem_Repeat 579376 579410 70 + . . scaffold829 TRF Tandem_Repeat 581747 581779 66 + . . scaffold829 WUBlastX DNA_TcMar-Pogo 592274 592804 112 - . . scaffold829 WUBlastX DNA_TcMar-Pogo 592586 592807 118 - . . scaffold829 WUBlastX DNA_TcMar-Pogo 592598 592846 113 - . . scaffold829 WUBlastX DNA_TcMar-Tigge 592809 592871 35 - . . scaffold829 WUBlastX DNA_TcMar-Pogo 592864 593028 101 - . . scaffold829 WUBlastX DNA_TcMar-Pogo 592873 593073 73 - . . scaffold829 TRF Tandem_Repeat 594573 594602 60 + . . scaffold829 GLEAN promoter 600121 601120 0.900297 + . ID=CGI_10021153; scaffold829 GLEAN mRNA 601121 611284 0.900297 + . ID=CGI_10021153; scaffold829 TRF Tandem_Repeat 605741 605775 61 + . . scaffold829 WUBlastX LINE_L1-Tx1 612617 613858 346 + . . scaffold829 WUBlastX LINE_L1 613625 613939 55 + . . scaffold829 WUBlastX LINE_L2 614289 614351 21 + . . scaffold829 WUBlastX LINE_L1-Tx1 614845 615045 61 + . . scaffold829 WUBlastX LINE_L1 614948 615691 119 + . . scaffold829 WUBlastX LINE_L1-Tx1 615068 615766 321 + . . scaffold829 TRF Tandem_Repeat 626903 626949 94 + . . scaffold829 TRF Tandem_Repeat 632601 632751 160 + . . scaffold829 GLEAN mRNA 632815 640440 0.789441 - . ID=CGI_10021154; scaffold829 GLEAN promoter 640441 641440 0.789441 - . ID=CGI_10021154; scaffold831 GLEAN mRNA 2276 5817 0.835702 - . ID=CGI_10010285; scaffold831 GLEAN promoter 5818 6817 0.835702 - . ID=CGI_10010285; scaffold831 WUBlastX LTR_Gypsy 10139 10654 36 - . . scaffold831 WUBlastX LTR_DIRS 10232 10849 329 - . . scaffold831 WUBlastX LTR_Gypsy 10271 11053 72 - . . scaffold831 WUBlastX LTR_DIRS 11050 11667 166 - . . scaffold831 TRF Tandem_Repeat 16013 16047 70 + . . scaffold831 TRF Tandem_Repeat 19573 19713 104 + . . scaffold831 GLEAN promoter 20855 21854 1 + . ID=CGI_10010286; scaffold831 GLEAN mRNA 21855 31981 1 + . ID=CGI_10010286; scaffold831 WUBlastX LTR_Ngaro 22267 22560 45 + . . scaffold831 TRF Tandem_Repeat 23710 23763 56 + . . scaffold831 TRF Tandem_Repeat 23710 23760 50 + . . scaffold831 TRF Tandem_Repeat 30660 30718 118 + . . scaffold831 TRF Tandem_Repeat 33978 34013 72 + . . scaffold831 WUBlastX DNA_TcMar-Tc1 56418 57431 395 - . . scaffold831 TRF Tandem_Repeat 59873 60134 395 + . . scaffold831 GLEAN mRNA 67076 67462 0.965896 - . ID=CGI_10010287; scaffold831 GLEAN promoter 67463 68462 0.965896 - . ID=CGI_10010287; scaffold831 TRF Tandem_Repeat 74739 74799 58 + . . scaffold831 GLEAN mRNA 75769 75984 0.866299 - . ID=CGI_10010288; scaffold831 GLEAN promoter 75985 76984 0.866299 - . ID=CGI_10010288; scaffold831 WUBlastX LTR_DIRS 76355 76537 52 - . . scaffold831 WUBlastX LTR_Ngaro 76388 76537 71 - . . scaffold831 WUBlastX LTR_Ngaro 76397 76576 64 - . . scaffold831 WUBlastX LTR_Ngaro 76597 77064 177 - . . scaffold831 WUBlastX LTR_Ngaro 77057 78406 905 - . . scaffold831 WUBlastX LTR_Ngaro 78367 78468 22 - . . scaffold831 WUBlastX LTR_Ngaro 78503 79381 80 - . . scaffold831 WUBlastX LTR_Ngaro 78542 79138 132 - . . scaffold831 WUBlastX LTR_Ngaro 78713 79201 235 - . . scaffold831 WUBlastX LTR_Ngaro 78776 79288 182 - . . scaffold831 TRF Tandem_Repeat 81967 82028 115 + . . scaffold831 TRF Tandem_Repeat 82437 82489 97 + . . scaffold831 GLEAN promoter 84902 85901 0.731433 + . ID=CGI_10010289; scaffold831 GLEAN mRNA 85902 93333 0.731433 + . ID=CGI_10010289; scaffold831 TRF Tandem_Repeat 86850 86953 120 + . . scaffold831 WUBlastX LINE_L2 96249 97073 76 - . . scaffold831 WUBlastX LINE_L2 96405 97091 213 - . . scaffold831 WUBlastX LINE_L2 96534 97259 77 - . . scaffold831 GLEAN promoter 99616 100615 1 + . ID=CGI_10010290; scaffold831 GLEAN mRNA 100616 116544 1 + . ID=CGI_10010290; scaffold831 TRF Tandem_Repeat 104968 105018 68 + . . scaffold831 TRF Tandem_Repeat 109450 109539 51 + . . scaffold831 TRF Tandem_Repeat 111851 111910 93 + . . scaffold831 TRF Tandem_Repeat 114060 114423 665 + . . scaffold831 WUBlastX DNA_hAT-hATw 124348 125706 290 + . . scaffold831 WUBlastX DNA_hAT-hATw 125648 125974 54 + . . scaffold831 WUBlastX DNA_hAT-hATw 125813 126244 45 + . . scaffold831 TRF Tandem_Repeat 129241 129305 61 + . . scaffold831 WUBlastX LINE_RTE-X 131446 131772 29 + . . scaffold831 WUBlastX RC_Helitron 143841 144401 66 - . . scaffold831 GLEAN mRNA 145552 147810 0.999054 - . ID=CGI_10010291; scaffold831 GLEAN promoter 147811 148810 0.999054 - . ID=CGI_10010291; scaffold831 WUBlastX LTR_Gypsy 156200 157954 1354 + . . scaffold831 WUBlastX LTR_Gypsy 161092 161433 69 - . . scaffold831 WUBlastX DNA_Helitron 171725 172471 73 + . . scaffold831 WUBlastX RC_Helitron 171872 172549 280 + . . scaffold831 WUBlastX DNA_Helitron 172677 174986 1015 + . . scaffold831 WUBlastX RC_Helitron 175907 179956 2620 + . . scaffold831 WUBlastX LINE_L2 179198 180091 52 + . . scaffold831 TRF Tandem_Repeat 181869 181896 56 + . . scaffold831 TRF Tandem_Repeat 181894 181936 86 + . . scaffold831 GLEAN mRNA 185778 200635 0.766028 - . ID=CGI_10010292; scaffold831 TRF Tandem_Repeat 192137 192164 56 + . . scaffold831 TRF Tandem_Repeat 192162 192204 86 + . . scaffold831 GLEAN promoter 200636 201635 0.766028 - . ID=CGI_10010292; scaffold831 WUBlastX LINE_RTE-X 208676 208831 49 - . . scaffold831 WUBlastX LINE_RTE-X 208706 208831 71 - . . scaffold831 WUBlastX LINE_RTE-X 208777 209235 179 - . . scaffold831 GLEAN mRNA 226516 232603 0.788595 - . ID=CGI_10010293; scaffold831 GLEAN promoter 232604 233603 0.788595 - . ID=CGI_10010293; scaffold831 TRF Tandem_Repeat 232922 232982 113 + . . scaffold831 GLEAN promoter 240989 241988 0.734447 + . ID=CGI_10010294; scaffold831 GLEAN mRNA 241989 242258 0.734447 + . ID=CGI_10010294; scaffold831 WUBlastX LINE_L1-Tx1 243081 243593 37 + . . scaffold831 WUBlastX LINE_L1-Tx1 243159 243617 259 + . . scaffold831 TRF Tandem_Repeat 251849 251901 97 + . . scaffold831 WUBlastX LINE_L1-Tx1 251995 252495 55 - . . scaffold831 WUBlastX LINE_L1-Tx1 252016 252624 35 - . . scaffold831 WUBlastX LINE_L1 252629 252844 34 - . . scaffold831 WUBlastX LINE_L1-Tx1 252852 253805 394 - . . scaffold831 WUBlastX LINE_L1 253206 253937 43 - . . scaffold831 WUBlastX LINE_L1 254003 254113 25 - . . scaffold833 TRF Tandem_Repeat 2785 3151 479 + . . scaffold833 TRF Tandem_Repeat 2787 3151 347 + . . scaffold833 WUBlastX DNA_hAT-hATw 7857 8297 75 - . . scaffold833 WUBlastX DNA_hAT-hATw 8234 8599 108 - . . scaffold833 WUBlastX DNA_hAT-hATw 8682 9611 53 - . . scaffold833 WUBlastX DNA_hAT-hATw 10707 10928 66 - . . scaffold833 GLEAN promoter 30310 31309 0.990386 + . ID=CGI_10016728; scaffold833 GLEAN mRNA 31310 35359 0.990386 + . ID=CGI_10016728; scaffold833 TRF Tandem_Repeat 46282 46451 243 + . . scaffold833 GLEAN promoter 50523 51522 0.387919 + . ID=CGI_10016729; scaffold833 GLEAN mRNA 51523 63341 0.387919 + . ID=CGI_10016729; scaffold833 WUBlastX LTR_Gypsy 63701 63805 24 - . . scaffold833 WUBlastX LTR_Gypsy 63764 64501 231 - . . scaffold833 WUBlastX LTR_Gypsy-Cigr 63902 64510 401 - . . scaffold833 WUBlastX LTR_Gypsy 64509 67166 1213 - . . scaffold833 WUBlastX LTR_Gypsy 64509 66632 1214 - . . scaffold833 WUBlastX LTR_Gypsy 67157 67561 61 - . . scaffold833 WUBlastX LTR_Copia 67469 67687 73 - . . scaffold833 WUBlastX LTR_Gypsy-Cigr 67731 68279 148 - . . scaffold833 TRF Tandem_Repeat 68831 68911 90 + . . scaffold833 GLEAN promoter 84520 85519 0.995823 + . ID=CGI_10016730; scaffold833 GLEAN mRNA 85520 87163 0.995823 + . ID=CGI_10016730; scaffold833 GLEAN mRNA 107095 111665 0.966103 - . ID=CGI_10016731; scaffold833 GLEAN promoter 111666 112665 0.966103 - . ID=CGI_10016731; scaffold833 TRF Tandem_Repeat 116291 116348 116 + . . scaffold833 TRF Tandem_Repeat 117578 117610 66 + . . scaffold833 GLEAN promoter 119706 120705 0.762663 + . ID=CGI_10016732; scaffold833 GLEAN mRNA 120706 121428 0.762663 + . ID=CGI_10016732; scaffold833 TRF Tandem_Repeat 126294 126477 147 + . . scaffold833 TRF Tandem_Repeat 127371 127531 295 + . . scaffold833 GLEAN mRNA 127588 138189 0.999255 - . ID=CGI_10016733; scaffold833 TRF Tandem_Repeat 130555 132061 1649 + . . scaffold833 TRF Tandem_Repeat 130555 132061 1749 + . . scaffold833 TRF Tandem_Repeat 132238 132457 114 + . . scaffold833 TRF Tandem_Repeat 132271 132448 122 + . . scaffold833 GLEAN promoter 138190 139189 0.999255 - . ID=CGI_10016733; scaffold833 TRF Tandem_Repeat 155947 156523 180 + . . scaffold833 TRF Tandem_Repeat 155950 156963 272 + . . scaffold833 TRF Tandem_Repeat 156287 156556 136 + . . scaffold833 TRF Tandem_Repeat 156565 156667 127 + . . scaffold833 TRF Tandem_Repeat 156726 156963 128 + . . scaffold833 TRF Tandem_Repeat 159896 159948 106 + . . scaffold833 TRF Tandem_Repeat 165496 165763 509 + . . scaffold833 TRF Tandem_Repeat 177767 177817 102 + . . scaffold833 GLEAN promoter 188546 189545 0.531615 + . ID=CGI_10016734; scaffold833 GLEAN mRNA 189546 194107 0.531615 + . ID=CGI_10016734; scaffold833 GLEAN promoter 193410 194409 0.883954 + . ID=CGI_10016735; scaffold833 GLEAN mRNA 194410 200529 0.883954 + . ID=CGI_10016735; scaffold833 TRF Tandem_Repeat 196473 196502 60 + . . scaffold833 TRF Tandem_Repeat 206449 207279 1179 + . . scaffold833 GLEAN mRNA 207865 230249 0.790711 - . ID=CGI_10016736; scaffold833 TRF Tandem_Repeat 209986 210128 116 + . . scaffold833 TRF Tandem_Repeat 210006 210098 68 + . . scaffold833 TRF Tandem_Repeat 218942 219042 93 + . . scaffold833 TRF Tandem_Repeat 224821 224861 82 + . . scaffold833 TRF Tandem_Repeat 225067 225137 142 + . . scaffold833 TRF Tandem_Repeat 227046 227267 408 + . . scaffold833 GLEAN promoter 230250 231249 0.790711 - . ID=CGI_10016736; scaffold833 TRF Tandem_Repeat 232765 232856 112 + . . scaffold833 TRF Tandem_Repeat 238174 238414 270 + . . scaffold833 WUBlastX LINE_RTE-X 239114 239476 37 - . . scaffold833 WUBlastX LINE_RTE-X 239252 239476 45 - . . scaffold833 WUBlastX LINE_RTE-X 239511 240089 144 - . . scaffold833 GLEAN promoter 239516 240515 0.96892 + . ID=CGI_10016737; scaffold833 GLEAN promoter 239894 240893 0.968336 + . ID=CGI_10016738; scaffold833 WUBlastX LINE_RTE-X 240088 240279 122 - . . scaffold833 WUBlastX LINE_RTE-X 240088 240384 79 - . . scaffold833 WUBlastX LINE_RTE-BovB 240354 240758 78 + . . scaffold833 WUBlastX LINE_RTE-BovB 240375 240827 61 + . . scaffold833 WUBlastX LINE_RTE-BovB 240384 240656 89 + . . scaffold833 GLEAN mRNA 240516 240821 0.96892 + . ID=CGI_10016737; scaffold833 GLEAN mRNA 240894 243765 0.968336 + . ID=CGI_10016738; scaffold833 TRF Tandem_Repeat 245486 245526 82 + . . scaffold833 TRF Tandem_Repeat 246358 246388 62 + . . scaffold833 TRF Tandem_Repeat 249937 249987 102 + . . scaffold833 TRF Tandem_Repeat 252652 252887 282 + . . scaffold833 TRF Tandem_Repeat 262494 262567 139 + . . scaffold833 GLEAN promoter 274853 275852 0.986347 + . ID=CGI_10016739; scaffold833 GLEAN mRNA 275853 277505 0.986347 + . ID=CGI_10016739; scaffold833 GLEAN promoter 278495 279494 0.686448 + . ID=CGI_10016740; scaffold833 GLEAN mRNA 279495 281006 0.686448 + . ID=CGI_10016740; scaffold833 GLEAN mRNA 282507 288221 0.999676 - . ID=CGI_10016741; scaffold833 GLEAN promoter 288167 289166 1 + . ID=CGI_10016742; scaffold833 GLEAN promoter 288222 289221 0.999676 - . ID=CGI_10016741; scaffold833 GLEAN mRNA 289167 302231 1 + . ID=CGI_10016742; scaffold833 TRF Tandem_Repeat 296906 297171 174 + . . scaffold833 TRF Tandem_Repeat 299820 299860 82 + . . scaffold833 GLEAN promoter 302933 303932 1 + . ID=CGI_10016743; scaffold833 TRF Tandem_Repeat 303374 303403 53 + . . scaffold833 TRF Tandem_Repeat 303683 303718 65 + . . scaffold833 GLEAN mRNA 303933 309010 1 + . ID=CGI_10016743; scaffold833 TRF Tandem_Repeat 305741 305778 76 + . . scaffold833 GLEAN promoter 335322 336321 0.191045 + . ID=CGI_10016744; scaffold833 GLEAN mRNA 336322 390734 0.191045 + . ID=CGI_10016744; scaffold833 TRF Tandem_Repeat 351716 351888 301 + . . scaffold833 WUBlastX LINE_L1-Tx1 358665 358865 83 - . . scaffold833 TRF Tandem_Repeat 359104 360168 170 + . . scaffold833 TRF Tandem_Repeat 359104 359613 207 + . . scaffold833 TRF Tandem_Repeat 359118 360202 304 + . . scaffold833 TRF Tandem_Repeat 359360 359607 128 + . . scaffold833 TRF Tandem_Repeat 359620 359678 68 + . . scaffold833 TRF Tandem_Repeat 359850 360192 235 + . . scaffold833 TRF Tandem_Repeat 360054 360166 65 + . . scaffold833 TRF Tandem_Repeat 360112 360185 89 + . . scaffold833 TRF Tandem_Repeat 362155 362204 100 + . . scaffold833 TRF Tandem_Repeat 366222 366251 51 + . . scaffold833 WUBlastX LTR_Gypsy 368537 368794 24 - . . scaffold833 WUBlastX LTR_Gypsy 368618 370177 1023 - . . scaffold833 WUBlastX LTR_ERV1 369149 370366 189 - . . scaffold833 TRF Tandem_Repeat 372017 372056 62 + . . scaffold833 WUBlastX LINE_Penelope 379595 379774 101 - . . scaffold833 WUBlastX LINE_Penelope 379607 379819 69 - . . scaffold833 GLEAN mRNA 383705 384176 0.996309 - . ID=CGI_10016745; scaffold833 GLEAN promoter 384177 385176 0.996309 - . ID=CGI_10016745; scaffold833 TRF Tandem_Repeat 404240 404305 123 + . . scaffold833 TRF Tandem_Repeat 405764 405816 88 + . . scaffold833 WUBlastX DNA_TcMar-Marin 407055 407405 220 - . . scaffold833 WUBlastX DNA_TcMar-Marin 407450 407854 228 - . . scaffold833 WUBlastX DNA_TcMar-Marin 408053 408400 161 - . . scaffold833 WUBlastX DNA_TcMar-Marin 408053 408340 186 - . . scaffold833 WUBlastX DNA_TcMar-Marin 408334 408711 152 - . . scaffold833 TRF Tandem_Repeat 410341 410393 81 + . . scaffold833 WUBlastX DNA_Academ 463064 463465 118 - . . scaffold833 WUBlastX DNA_Academ 463064 463369 178 - . . scaffold833 WUBlastX DNA_Academ 463468 463722 77 - . . scaffold833 GLEAN mRNA 463710 469468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 463773 464843 264 - . . scaffold833 WUBlastX LINE_L1-Tx1 465344 465853 45 - . . scaffold833 WUBlastX LINE_L1-Tx1 465422 465823 82 - . . scaffold833 WUBlastX LINE_R2 465796 465885 22 - . . scaffold833 WUBlastX LINE_L1-Tx1 465889 467277 592 - . . scaffold833 WUBlastX LINE_L1-Tx1 467279 467689 412 - . . scaffold833 WUBlastX LINE_L1-Tx1 467279 467980 62 - . . scaffold833 WUBlastX LINE_L1 467315 467770 118 - . . scaffold833 WUBlastX LINE_L1-Tx1 467906 468598 350 - . . scaffold833 WUBlastX DNA_Academ 469283 469387 24 - . . scaffold833 WUBlastX DNA_Academ 469368 469910 174 - . . scaffold833 GLEAN promoter 469469 470468 0.999591 - . ID=CGI_10016746; scaffold833 WUBlastX DNA_Academ 469910 470116 92 - . . scaffold833 WUBlastX DNA_Academ 470485 470595 46 - . . scaffold833 WUBlastX DNA_Academ 470509 470631 20 - . . scaffold833 WUBlastX DNA_Academ 470703 470810 40 - . . scaffold833 WUBlastX DNA_Academ 470703 470840 34 - . . scaffold833 TRF Tandem_Repeat 474808 474861 65 + . . scaffold833 TRF Tandem_Repeat 475060 475867 1111 + . . scaffold834 WUBlastX LTR_Gypsy 9389 9526 28 - . . scaffold834 WUBlastX LTR_Gypsy 9413 9532 35 - . . scaffold834 WUBlastX LTR_Gypsy 9532 9714 90 - . . scaffold834 TRF Tandem_Repeat 13179 13226 51 + . . scaffold834 TRF Tandem_Repeat 19909 19951 86 + . . scaffold834 TRF Tandem_Repeat 22131 22169 55 + . . scaffold834 GLEAN promoter 23357 24356 0.776512 + . ID=CGI_10004320; scaffold834 GLEAN mRNA 24357 24542 0.776512 + . ID=CGI_10004320; scaffold834 WUBlastX LTR_Gypsy 24559 25452 26 + . . scaffold834 WUBlastX LTR_Gypsy 24643 25083 52 + . . scaffold834 WUBlastX LTR_Gypsy 24718 25107 74 + . . scaffold834 WUBlastX LTR_Gypsy 24904 25158 46 + . . scaffold834 WUBlastX LTR_Gypsy 25225 27840 638 + . . scaffold834 WUBlastX LTR_Gypsy 25693 29223 1288 + . . scaffold834 WUBlastX LTR_Gypsy-Cigr 26293 29154 1358 + . . scaffold834 WUBlastX LTR_Gypsy 28144 29436 352 + . . scaffold834 WUBlastX LTR_Gypsy 30201 30461 59 + . . scaffold834 TRF Tandem_Repeat 35228 35264 74 + . . scaffold834 GLEAN promoter 35308 36307 1 + . ID=CGI_10004321; scaffold834 GLEAN mRNA 36308 42023 1 + . ID=CGI_10004321; scaffold834 WUBlastX LINE_RTE-X 45815 46222 109 - . . scaffold834 WUBlastX LINE_RTE-X 45887 46480 310 - . . scaffold834 WUBlastX LINE_CR1 46878 48356 208 - . . scaffold834 WUBlastX LINE_RTE-X 47130 48353 793 - . . scaffold834 WUBlastX LINE_L1 47460 48728 55 - . . scaffold834 WUBlastX LINE_L1-Tx1 49134 49352 34 - . . scaffold834 WUBlastX LINE_RTE-X 49233 49406 67 - . . scaffold834 WUBlastX LINE_RTE-X 49364 49768 144 - . . scaffold834 WUBlastX LTR_Gypsy 51726 53015 368 - . . scaffold834 WUBlastX LTR_Gypsy 51930 53660 1312 - . . scaffold834 WUBlastX LTR_Gypsy-Cigr 54668 55123 390 - . . scaffold834 WUBlastX LTR_Gypsy 55081 55629 407 - . . scaffold834 WUBlastX LTR_Gypsy-Cigr 55096 55995 390 - . . scaffold834 WUBlastX LTR_Gypsy 55765 56217 24 - . . scaffold834 WUBlastX LTR_Gypsy 55768 56103 50 - . . scaffold834 WUBlastX LTR_Gypsy 56244 56690 51 - . . scaffold834 WUBlastX LTR_Gypsy 56677 56883 45 - . . scaffold834 WUBlastX LTR_Gypsy 57104 57352 87 - . . scaffold834 WUBlastX LTR_Gypsy 57149 57400 37 - . . scaffold834 WUBlastX LINE_RTE-X 57794 58270 39 - . . scaffold834 TRF Tandem_Repeat 59182 60201 1305 + . . scaffold834 TRF Tandem_Repeat 62221 62335 122 + . . scaffold834 WUBlastX LINE_RTE-X 66526 67296 175 - . . scaffold834 WUBlastX LINE_RTE-X 66667 67515 229 - . . scaffold834 WUBlastX LINE_RTE-X 67388 68185 329 - . . scaffold834 WUBlastX LINE_RTE-X 67526 68185 404 - . . scaffold834 GLEAN promoter 69472 70471 0.493914 + . ID=CGI_10004322; scaffold834 TRF Tandem_Repeat 69975 70022 96 + . . scaffold834 GLEAN mRNA 70472 85857 0.493914 + . ID=CGI_10004322; scaffold834 WUBlastX LINE_RTE-X 81618 81956 76 - . . scaffold834 TRF Tandem_Repeat 84407 84442 72 + . . scaffold834 GLEAN promoter 85431 86430 0.989184 + . ID=CGI_10004323; scaffold834 GLEAN mRNA 86431 86819 0.989184 + . ID=CGI_10004323; scaffold834 WUBlastX LTR_DIRS 87628 88356 188 + . . scaffold835 GLEAN mRNA 2842 15737 0.5 - . ID=CGI_10016102; scaffold835 TRF Tandem_Repeat 4781 4816 63 + . . scaffold835 GLEAN promoter 7632 8631 1 + . ID=CGI_10016103; scaffold835 GLEAN mRNA 8632 15050 1 + . ID=CGI_10016103; scaffold835 GLEAN promoter 15738 16737 0.5 - . ID=CGI_10016102; scaffold835 GLEAN mRNA 32318 35573 0.356644 - . ID=CGI_10016104; scaffold835 GLEAN promoter 35574 36573 0.356644 - . ID=CGI_10016104; scaffold835 WUBlastX LTR_DIRS 40718 41257 100 + . . scaffold835 WUBlastX LTR_DIRS 41254 41523 113 + . . scaffold835 WUBlastX LTR_DIRS 41260 41577 98 + . . scaffold835 GLEAN mRNA 43901 46837 0.734569 - . ID=CGI_10016105; scaffold835 GLEAN promoter 46838 47837 0.734569 - . ID=CGI_10016105; scaffold835 WUBlastX LTR_DIRS 51168 51296 40 + . . scaffold835 WUBlastX LTR_DIRS 51305 51445 42 + . . scaffold835 WUBlastX LTR_DIRS 51329 51451 51 + . . scaffold835 WUBlastX LTR_DIRS 51442 52107 208 + . . scaffold835 GLEAN promoter 56407 57406 0.6375 + . ID=CGI_10016107; scaffold835 GLEAN mRNA 56944 91635 0.636487 - . ID=CGI_10016106; scaffold835 GLEAN mRNA 57407 60052 0.6375 + . ID=CGI_10016107; scaffold835 TRF Tandem_Repeat 79529 79591 126 + . . scaffold835 TRF Tandem_Repeat 79982 80053 96 + . . scaffold835 TRF Tandem_Repeat 85194 86260 1431 + . . scaffold835 GLEAN promoter 91636 92635 0.636487 - . ID=CGI_10016106; scaffold835 TRF Tandem_Repeat 105862 105903 84 + . . scaffold835 GLEAN promoter 111057 112056 0.463195 + . ID=CGI_10016108; scaffold835 GLEAN mRNA 112057 130845 0.463195 + . ID=CGI_10016108; scaffold835 TRF Tandem_Repeat 112759 112814 112 + . . scaffold835 TRF Tandem_Repeat 112814 112845 64 + . . scaffold835 GLEAN mRNA 138159 180188 0.998976 - . ID=CGI_10016109; scaffold835 TRF Tandem_Repeat 139855 139884 51 + . . scaffold835 TRF Tandem_Repeat 152968 153189 313 + . . scaffold835 TRF Tandem_Repeat 177405 177450 92 + . . scaffold835 GLEAN promoter 180189 181188 0.998976 - . ID=CGI_10016109; scaffold835 WUBlastX LINE_RTE-X 191682 192149 169 - . . scaffold835 WUBlastX LINE_RTE-X 191694 192062 174 - . . scaffold835 WUBlastX LINE_RTE-X 192190 193149 420 - . . scaffold835 WUBlastX LINE_R2 192664 193242 55 - . . scaffold835 WUBlastX LINE_RTE-X 193564 193608 20 - . . scaffold835 GLEAN mRNA 195242 200057 0.999999 - . ID=CGI_10016110; scaffold835 GLEAN promoter 199520 200519 0.998274 + . ID=CGI_10016111; scaffold835 GLEAN promoter 200058 201057 0.999999 - . ID=CGI_10016110; scaffold835 GLEAN mRNA 200520 202955 0.998274 + . ID=CGI_10016111; scaffold835 TRF Tandem_Repeat 204368 204407 80 + . . scaffold835 GLEAN mRNA 206691 208394 0.999661 - . ID=CGI_10016112; scaffold835 GLEAN promoter 208395 209394 0.999661 - . ID=CGI_10016112; scaffold835 GLEAN mRNA 209952 211574 0.998234 - . ID=CGI_10016113; scaffold835 WUBlastX LINE_L1 210810 211259 23 - . . scaffold835 GLEAN promoter 211575 212574 0.998234 - . ID=CGI_10016113; scaffold835 GLEAN mRNA 212077 224392 0.727984 - . ID=CGI_10016114; scaffold835 GLEAN promoter 224393 225392 0.727984 - . ID=CGI_10016114; scaffold835 TRF Tandem_Repeat 230499 230589 166 + . . scaffold835 TRF Tandem_Repeat 234986 235035 100 + . . scaffold835 GLEAN promoter 236290 237289 0.99795 + . ID=CGI_10016115; scaffold835 GLEAN mRNA 237290 242539 0.99795 + . ID=CGI_10016115; scaffold835 TRF Tandem_Repeat 244680 244734 110 + . . scaffold835 TRF Tandem_Repeat 252107 252136 60 + . . scaffold835 TRF Tandem_Repeat 255831 255858 56 + . . scaffold835 GLEAN promoter 262601 263600 0.999998 + . ID=CGI_10016116; scaffold835 GLEAN mRNA 263601 268556 0.999998 + . ID=CGI_10016116; scaffold835 TRF Tandem_Repeat 276937 276982 92 + . . scaffold835 GLEAN promoter 286571 287570 1 + . ID=CGI_10016118; scaffold835 GLEAN mRNA 287187 289205 0.999998 - . ID=CGI_10016117; scaffold835 GLEAN mRNA 287571 287750 1 + . ID=CGI_10016118; scaffold835 GLEAN promoter 289206 290205 0.999998 - . ID=CGI_10016117; scaffold835 TRF Tandem_Repeat 295637 295665 58 + . . scaffold835 TRF Tandem_Repeat 297856 297929 148 + . . scaffold835 GLEAN mRNA 298262 302549 0.412308 - . ID=CGI_10016119; scaffold835 GLEAN promoter 302550 303549 0.412308 - . ID=CGI_10016119; scaffold835 TRF Tandem_Repeat 303540 303630 130 + . . scaffold835 GLEAN promoter 303643 304642 1 + . ID=CGI_10016120; scaffold835 TRF Tandem_Repeat 303719 303766 87 + . . scaffold835 GLEAN mRNA 304643 313101 1 + . ID=CGI_10016120; scaffold835 GLEAN mRNA 315652 347244 0.999674 - . ID=CGI_10016121; scaffold835 TRF Tandem_Repeat 333061 333129 58 + . . scaffold835 GLEAN promoter 347245 348244 0.999674 - . ID=CGI_10016121; scaffold835 TRF Tandem_Repeat 359055 359189 110 + . . scaffold835 TRF Tandem_Repeat 360218 360351 114 + . . scaffold835 TRF Tandem_Repeat 366647 366673 54 + . . scaffold835 TRF Tandem_Repeat 378964 379004 82 + . . scaffold835 TRF Tandem_Repeat 393738 393768 62 + . . scaffold835 WUBlastX LINE_RTE-X 407018 408136 399 + . . scaffold835 WUBlastX DNA_MuDR 409054 409677 183 - . . scaffold835 WUBlastX DNA_MuDR 409638 410345 101 - . . scaffold835 WUBlastX DNA_MuDR 409653 410198 118 - . . scaffold835 GLEAN promoter 415201 416200 1 + . ID=CGI_10016122; scaffold835 GLEAN mRNA 416201 417761 1 + . ID=CGI_10016122; scaffold835 GLEAN mRNA 416509 422867 0.987617 - . ID=CGI_10016123; scaffold835 TRF Tandem_Repeat 417116 417163 96 + . . scaffold835 GLEAN promoter 422868 423867 0.987617 - . ID=CGI_10016123; scaffold835 TRF Tandem_Repeat 426045 426072 56 + . . scaffold835 TRF Tandem_Repeat 426072 426119 96 + . . scaffold835 WUBlastX DNA_MuDR 455904 457208 302 - . . scaffold836 GLEAN promoter 896 1895 0.999996 + . ID=CGI_10002617; scaffold836 GLEAN mRNA 1896 8809 0.999996 + . ID=CGI_10002617; scaffold836 GLEAN promoter 12982 13981 0.988648 + . ID=CGI_10002618; scaffold836 GLEAN mRNA 13982 18586 0.988648 + . ID=CGI_10002618; scaffold836 GLEAN promoter 19805 20804 0.999996 + . ID=CGI_10002619; scaffold836 GLEAN mRNA 20805 27645 0.999996 + . ID=CGI_10002619; scaffold836 GLEAN promoter 28903 29902 0.999995 + . ID=CGI_10002620; scaffold836 GLEAN mRNA 29903 39980 0.999995 + . ID=CGI_10002620; scaffold837 TRF Tandem_Repeat 2250 2348 99 + . . scaffold837 WUBlastX LTR_Gypsy 7115 7342 62 + . . scaffold837 WUBlastX LTR_Gypsy-Cigr 7163 7354 102 + . . scaffold837 WUBlastX LTR_Gypsy 7360 7815 132 + . . scaffold837 WUBlastX LTR_Gypsy 7486 7938 59 + . . scaffold837 WUBlastX LTR_Gypsy 7905 8645 341 + . . scaffold837 WUBlastX LTR_Gypsy 7953 8774 216 + . . scaffold837 GLEAN promoter 7953 8952 0.999998 + . ID=CGI_10006865; scaffold837 WUBlastX LTR_Gypsy-Cigr 7956 8546 412 + . . scaffold837 WUBlastX LTR_Gypsy 7956 8450 452 + . . scaffold837 WUBlastX LTR_Gypsy 8570 8848 54 + . . scaffold837 GLEAN mRNA 8953 9495 0.999998 + . ID=CGI_10006865; scaffold837 WUBlastX DNA_TcMar-Tc1 20943 21080 57 - . . scaffold837 WUBlastX DNA_TcMar-IS885 21065 21235 42 - . . scaffold837 WUBlastX DNA_TcMar-Tc1 21107 21235 80 - . . scaffold837 WUBlastX DNA_TcMar-Tc1 21229 21687 193 - . . scaffold837 WUBlastX DNA_TcMar-Tc1 21229 21600 196 - . . scaffold837 WUBlastX DNA_TcMar-Tc1 21641 21955 122 - . . scaffold837 WUBlastX DNA_TcMar-Tc1 21692 22024 39 - . . scaffold837 GLEAN promoter 30058 31057 0.998023 + . ID=CGI_10006866; scaffold837 GLEAN mRNA 31058 31472 0.998023 + . ID=CGI_10006866; scaffold837 GLEAN promoter 32486 33485 0.701955 + . ID=CGI_10006867; scaffold837 TRF Tandem_Repeat 32953 33413 613 + . . scaffold837 GLEAN mRNA 33486 42799 0.701955 + . ID=CGI_10006867; scaffold837 TRF Tandem_Repeat 43205 43248 88 + . . scaffold837 TRF Tandem_Repeat 45603 45666 83 + . . scaffold837 TRF Tandem_Repeat 47525 47800 498 + . . scaffold837 TRF Tandem_Repeat 48497 49027 635 + . . scaffold837 TRF Tandem_Repeat 59135 59182 96 + . . scaffold837 TRF Tandem_Repeat 60369 60403 56 + . . scaffold837 GLEAN promoter 66356 67355 0.999913 + . ID=CGI_10006868; scaffold837 GLEAN mRNA 67356 68519 0.999913 + . ID=CGI_10006868; scaffold837 GLEAN mRNA 74373 78950 1 - . ID=CGI_10006869; scaffold837 TRF Tandem_Repeat 76106 76192 138 + . . scaffold837 GLEAN promoter 78951 79950 1 - . ID=CGI_10006869; scaffold837 WUBlastX LINE_RTE-X 81259 81522 73 - . . scaffold837 WUBlastX LINE_RTE-X 81316 81612 63 - . . scaffold837 TRF Tandem_Repeat 86677 86815 167 + . . scaffold837 GLEAN mRNA 88985 97976 1 - . ID=CGI_10006870; scaffold837 TRF Tandem_Repeat 91328 92250 1471 + . . scaffold837 TRF Tandem_Repeat 95333 95420 131 + . . scaffold837 GLEAN promoter 97977 98976 1 - . ID=CGI_10006870; scaffold837 TRF Tandem_Repeat 99706 99820 149 + . . scaffold837 GLEAN promoter 99744 100743 0.99915 + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 99885 100058 114 + . . scaffold837 TRF Tandem_Repeat 99894 100079 327 + . . scaffold837 GLEAN mRNA 100744 120791 0.99915 + . ID=CGI_10006871; scaffold837 TRF Tandem_Repeat 107124 107367 142 + . . scaffold837 TRF Tandem_Repeat 111711 111769 111 + . . scaffold837 TRF Tandem_Repeat 112531 112621 128 + . . scaffold837 TRF Tandem_Repeat 113197 113495 291 + . . scaffold837 GLEAN mRNA 123531 163524 0.330154 - . ID=CGI_10006872; scaffold837 TRF Tandem_Repeat 124484 124529 92 + . . scaffold837 TRF Tandem_Repeat 125507 125616 65 + . . scaffold837 TRF Tandem_Repeat 125776 125867 72 + . . scaffold837 TRF Tandem_Repeat 126212 126326 83 + . . scaffold837 TRF Tandem_Repeat 129775 130464 988 + . . scaffold837 TRF Tandem_Repeat 132877 133963 1587 + . . scaffold837 TRF Tandem_Repeat 132877 133969 1672 + . . scaffold837 GLEAN promoter 144105 145104 1 + . ID=CGI_10006873; scaffold837 GLEAN mRNA 145105 145915 1 + . ID=CGI_10006873; scaffold837 TRF Tandem_Repeat 152171 152959 1007 + . . scaffold837 TRF Tandem_Repeat 161916 161963 69 + . . scaffold837 TRF Tandem_Repeat 161916 161969 63 + . . scaffold837 GLEAN promoter 163525 164391 0.330154 - . ID=CGI_10006872; scaffold838 GLEAN promoter 2956 3955 0.615159 + . ID=CGI_10003280; scaffold838 GLEAN mRNA 3956 21971 0.615159 + . ID=CGI_10003280; scaffold838 WUBlastX LTR_Gypsy 25100 25663 113 + . . scaffold838 WUBlastX LTR_Gypsy 25370 25663 119 + . . scaffold838 WUBlastX LTR_Gypsy-Cigr 25448 25693 143 + . . scaffold838 WUBlastX LTR_Gypsy 25645 26073 103 + . . scaffold838 WUBlastX LTR_Gypsy 25705 26160 77 + . . scaffold838 TRF Tandem_Repeat 27532 27571 53 + . . scaffold838 TRF Tandem_Repeat 27535 27571 65 + . . scaffold838 TRF Tandem_Repeat 36617 36768 169 + . . scaffold838 TRF Tandem_Repeat 36674 36774 67 + . . scaffold838 GLEAN mRNA 36837 65581 0.544755 - . ID=CGI_10003281; scaffold838 TRF Tandem_Repeat 43839 43887 66 + . . scaffold838 GLEAN promoter 65582 66581 0.544755 - . ID=CGI_10003281; scaffold839 TRF Tandem_Repeat 11896 11947 104 + . . scaffold839 TRF Tandem_Repeat 12136 12178 86 + . . scaffold839 TRF Tandem_Repeat 16593 16618 52 + . . scaffold839 GLEAN promoter 16832 17831 1 + . ID=CGI_10004333; scaffold839 GLEAN mRNA 17832 25200 1 + . ID=CGI_10004333; scaffold839 GLEAN promoter 24516 25515 0.999053 + . ID=CGI_10004334; scaffold839 GLEAN mRNA 25516 32219 0.999053 + . ID=CGI_10004334; scaffold839 GLEAN promoter 38216 39215 0.806328 + . ID=CGI_10004335; scaffold839 GLEAN mRNA 39216 58962 0.806328 + . ID=CGI_10004335; scaffold839 TRF Tandem_Repeat 41547 41784 383 + . . scaffold839 TRF Tandem_Repeat 42256 42308 106 + . . scaffold839 TRF Tandem_Repeat 61069 61140 103 + . . scaffold839 GLEAN promoter 65490 66489 0.823239 + . ID=CGI_10004336; scaffold839 GLEAN mRNA 66490 68154 0.823239 + . ID=CGI_10004336; scaffold839 TRF Tandem_Repeat 69310 69361 95 + . . scaffold839 TRF Tandem_Repeat 73549 73608 75 + . . scaffold839 GLEAN mRNA 78755 87937 0.999546 - . ID=CGI_10004337; scaffold839 TRF Tandem_Repeat 81795 81833 78 + . . scaffold839 WUBlastX LINE_L1-Tx1 83778 84014 53 - . . scaffold839 WUBlastX LINE_L1-Tx1 83778 84098 20 - . . scaffold839 WUBlastX LINE_L1-Tx1 84118 85494 666 - . . scaffold839 WUBlastX LINE_L1 86311 86733 56 - . . scaffold839 WUBlastX LINE_L1 86449 86703 104 - . . scaffold839 WUBlastX LINE_L1-Tx1 86717 87676 185 - . . scaffold839 GLEAN promoter 87938 88937 0.999546 - . ID=CGI_10004337; scaffold839 WUBlastX LINE_CR1 88347 88958 79 - . . scaffold839 WUBlastX LTR_Gypsy 89356 90459 642 - . . scaffold839 WUBlastX LTR_Gypsy 89599 90459 718 - . . scaffold839 WUBlastX LTR_Gypsy 91216 91302 26 - . . scaffold839 WUBlastX LTR_Gypsy 91613 92200 548 - . . scaffold839 WUBlastX LTR_Gypsy 92614 93897 803 - . . scaffold839 WUBlastX LTR_Gypsy 93826 93984 27 - . . scaffold839 WUBlastX LTR_Gypsy 93927 94358 336 - . . scaffold839 WUBlastX LTR_Copia 94011 94439 23 - . . scaffold841 GLEAN mRNA 3291 21897 0.544469 - . ID=CGI_10001583; scaffold841 TRF Tandem_Repeat 16064 16150 59 + . . scaffold841 TRF Tandem_Repeat 20038 20087 100 + . . scaffold841 GLEAN promoter 21898 22897 0.544469 - . ID=CGI_10001583; scaffold841 WUBlastX DNA_IS4EU 24800 25102 37 + . . scaffold841 WUBlastX DNA_IS4EU 25521 25685 44 + . . scaffold841 WUBlastX DNA_IS4EU 25723 26454 158 + . . scaffold841 WUBlastX DNA_IS4EU 25969 26454 162 + . . scaffold843 GLEAN mRNA 3978 16857 0.998415 - . ID=CGI_10001271; scaffold843 GLEAN promoter 16858 17857 0.998415 - . ID=CGI_10001271; scaffold847 TRF Tandem_Repeat 7209 7258 73 + . . scaffold847 TRF Tandem_Repeat 7216 7270 76 + . . scaffold847 TRF Tandem_Repeat 11938 13603 1982 + . . scaffold847 TRF Tandem_Repeat 13769 13810 57 + . . scaffold847 GLEAN mRNA 61092 71360 0.999451 - . ID=CGI_10022265; scaffold847 WUBlastX LTR_Gypsy 65237 65305 25 - . . scaffold847 WUBlastX LTR_Gypsy 65259 65522 69 - . . scaffold847 WUBlastX LTR_Gypsy 65295 65495 97 - . . scaffold847 GLEAN promoter 71361 72360 0.999451 - . ID=CGI_10022265; scaffold847 GLEAN mRNA 74569 77944 0.999931 - . ID=CGI_10022266; scaffold847 GLEAN promoter 77945 78944 0.999931 - . ID=CGI_10022266; scaffold847 GLEAN mRNA 80918 83809 0.999243 - . ID=CGI_10022267; scaffold847 TRF Tandem_Repeat 81965 82043 158 + . . scaffold847 GLEAN promoter 83810 84809 0.999243 - . ID=CGI_10022267; scaffold847 WUBlastX LINE_RTE-X 99360 99809 73 + . . scaffold847 WUBlastX LINE_RTE-X 99381 99683 81 + . . scaffold847 WUBlastX LINE_RTE-X 99426 99680 83 + . . scaffold847 WUBlastX LINE_L1-Tx1 126819 127142 100 - . . scaffold847 WUBlastX LINE_L1-Tx1 128235 129485 330 - . . scaffold847 TRF Tandem_Repeat 132384 133179 1326 + . . scaffold847 TRF Tandem_Repeat 144243 144483 412 + . . scaffold847 TRF Tandem_Repeat 154966 155005 80 + . . scaffold847 WUBlastX DNA_PiggyBac 169444 169638 71 + . . scaffold847 WUBlastX DNA_PiggyBac 169459 169749 46 + . . scaffold847 WUBlastX LINE_CR1 173433 173837 115 + . . scaffold847 WUBlastX LINE_CR1 173496 173822 125 + . . scaffold847 WUBlastX LINE_L2 174028 174282 85 + . . scaffold847 WUBlastX LINE_CR1 174094 174435 106 + . . scaffold847 WUBlastX LINE_CR1 174097 174282 106 + . . scaffold847 WUBlastX LINE_CR1 174276 174509 60 + . . scaffold847 WUBlastX LINE_CR1 174276 174614 27 + . . scaffold847 TRF Tandem_Repeat 180027 180093 127 + . . scaffold847 TRF Tandem_Repeat 181911 182027 171 + . . scaffold847 TRF Tandem_Repeat 182872 182922 102 + . . scaffold847 TRF Tandem_Repeat 185704 185749 67 + . . scaffold847 GLEAN promoter 210671 211670 0.637066 + . ID=CGI_10022268; scaffold847 GLEAN mRNA 211671 218369 0.637066 + . ID=CGI_10022268; scaffold847 TRF Tandem_Repeat 229191 229217 54 + . . scaffold847 GLEAN promoter 238561 239560 0.702157 + . ID=CGI_10022269; scaffold847 GLEAN mRNA 239561 257024 0.702157 + . ID=CGI_10022269; scaffold847 TRF Tandem_Repeat 239954 239991 76 + . . scaffold847 TRF Tandem_Repeat 239991 240027 65 + . . scaffold847 TRF Tandem_Repeat 244126 244164 78 + . . scaffold847 TRF Tandem_Repeat 249149 249188 53 + . . scaffold847 TRF Tandem_Repeat 249157 249191 52 + . . scaffold847 WUBlastX DNA_Kolobok-IS4 265225 265581 148 - . . scaffold847 TRF Tandem_Repeat 272703 272736 50 + . . scaffold847 GLEAN mRNA 273681 282893 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LTR_Pao 277741 280167 1935 - . . scaffold847 WUBlastX LTR_Pao 279310 280368 155 - . . scaffold847 WUBlastX LINE_RTE-X 281182 281667 151 - . . scaffold847 WUBlastX LINE_RTE-X 281236 281631 161 - . . scaffold847 WUBlastX LINE_RTE-X 281693 282259 67 - . . scaffold847 WUBlastX LINE_RTE-X 281696 282052 102 - . . scaffold847 WUBlastX LINE_RTE-X 281798 282160 108 - . . scaffold847 WUBlastX LINE_RTE-X 282126 282344 64 - . . scaffold847 GLEAN promoter 282894 283893 0.998253 - . ID=CGI_10022270; scaffold847 WUBlastX LINE_RTE-X 284807 285181 136 + . . scaffold847 WUBlastX LINE_RTE-X 285231 285470 75 + . . scaffold847 WUBlastX LINE_RTE-X 285258 285458 117 + . . scaffold847 WUBlastX LINE_RTE-X 285520 285954 130 + . . scaffold847 GLEAN mRNA 289183 302748 0.612962 - . ID=CGI_10022271; scaffold847 TRF Tandem_Repeat 289368 289397 60 + . . scaffold847 GLEAN promoter 302749 303748 0.612962 - . ID=CGI_10022271; scaffold847 GLEAN promoter 306777 307776 1 + . ID=CGI_10022272; scaffold847 GLEAN mRNA 307777 327988 1 + . ID=CGI_10022272; scaffold847 TRF Tandem_Repeat 313010 313069 93 + . . scaffold847 TRF Tandem_Repeat 328270 328313 52 + . . scaffold847 TRF Tandem_Repeat 341018 341052 61 + . . scaffold847 TRF Tandem_Repeat 341050 341194 179 + . . scaffold847 GLEAN promoter 341371 342370 0.999286 + . ID=CGI_10022273; scaffold847 TRF Tandem_Repeat 341794 341859 132 + . . scaffold847 GLEAN mRNA 342371 356950 0.999286 + . ID=CGI_10022273; scaffold847 TRF Tandem_Repeat 349513 349845 440 + . . scaffold847 TRF Tandem_Repeat 353113 353771 933 + . . scaffold847 GLEAN promoter 356195 357194 0.999624 + . ID=CGI_10022274; scaffold847 GLEAN mRNA 357195 379550 0.999624 + . ID=CGI_10022274; scaffold847 TRF Tandem_Repeat 378079 378131 106 + . . scaffold847 GLEAN mRNA 382516 386903 0.946133 - . ID=CGI_10022275; scaffold847 GLEAN promoter 386904 387903 0.946133 - . ID=CGI_10022275; scaffold847 GLEAN promoter 395583 396582 1 + . ID=CGI_10022276; scaffold847 GLEAN mRNA 396583 399955 1 + . ID=CGI_10022276; scaffold847 GLEAN mRNA 400300 412206 0.526432 - . ID=CGI_10022277; scaffold847 TRF Tandem_Repeat 409838 410159 574 + . . scaffold847 GLEAN promoter 412207 413206 0.526432 - . ID=CGI_10022277; scaffold847 TRF Tandem_Repeat 417270 417321 104 + . . scaffold847 TRF Tandem_Repeat 424825 424855 62 + . . scaffold847 WUBlastX LINE_Penelope 426123 426395 31 + . . scaffold847 TRF Tandem_Repeat 428823 428920 72 + . . scaffold847 GLEAN promoter 434807 435806 0.572478 + . ID=CGI_10022278; scaffold847 GLEAN mRNA 435807 447835 0.572478 + . ID=CGI_10022278; scaffold847 WUBlastX RC_Helitron 436649 436933 21 - . . scaffold847 WUBlastX RC_Helitron 436670 436882 58 - . . scaffold847 WUBlastX RC_Helitron 436989 437846 97 - . . scaffold847 WUBlastX RC_Helitron 437219 437503 109 - . . scaffold847 WUBlastX RC_Helitron 437364 437846 168 - . . scaffold847 WUBlastX RC_Helitron 437499 437846 210 - . . scaffold847 WUBlastX RC_Helitron 437852 438349 316 - . . scaffold847 WUBlastX RC_Helitron 438355 438774 50 - . . scaffold847 WUBlastX RC_Helitron 438743 439114 118 - . . scaffold847 WUBlastX RC_Helitron 438743 439180 63 - . . scaffold847 WUBlastX RC_Helitron 438746 438952 131 - . . scaffold847 WUBlastX RC_Helitron 439398 439457 20 - . . scaffold847 TRF Tandem_Repeat 472113 475427 3438 + . . scaffold847 TRF Tandem_Repeat 477428 478441 1458 + . . scaffold847 WUBlastX LTR_Gypsy 493546 493785 41 + . . scaffold847 WUBlastX LTR_Gypsy-Cigr 493597 494346 176 + . . scaffold847 WUBlastX LTR_Gypsy 494361 494678 87 + . . scaffold847 WUBlastX LTR_Gypsy 494421 494720 182 + . . scaffold847 WUBlastX LTR_Gypsy 495199 495279 22 + . . scaffold847 WUBlastX LTR_Gypsy-Cigr 495244 496620 755 + . . scaffold847 WUBlastX LTR_Gypsy 495250 497634 463 + . . scaffold847 WUBlastX LTR_Gypsy 497649 498533 701 + . . scaffold847 GLEAN promoter 500268 501267 1 + . ID=CGI_10022279; scaffold847 GLEAN mRNA 501268 508996 1 + . ID=CGI_10022279; scaffold847 GLEAN mRNA 507894 513184 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LTR_DIRS 509286 509549 189 - . . scaffold847 WUBlastX LTR_DIRS 509286 510176 147 - . . scaffold847 WUBlastX LTR_DIRS 510163 511344 720 - . . scaffold847 WUBlastX LTR_DIRS 511355 511729 211 - . . scaffold847 WUBlastX LTR_DIRS 511358 511894 163 - . . scaffold847 GLEAN promoter 511783 512782 0.999676 + . ID=CGI_10022281; scaffold847 WUBlastX LTR_DIRS 511809 512111 79 - . . scaffold847 WUBlastX LTR_DIRS 511905 512156 61 - . . scaffold847 GLEAN mRNA 512783 523785 0.999676 + . ID=CGI_10022281; scaffold847 GLEAN promoter 513185 514184 0.74223 - . ID=CGI_10022280; scaffold847 WUBlastX LINE_L2 520355 521947 247 + . . scaffold847 WUBlastX LINE_L2 520646 521950 806 + . . scaffold847 TRF Tandem_Repeat 547506 548405 1463 + . . scaffold847 GLEAN promoter 551502 552501 0.999147 + . ID=CGI_10022282; scaffold847 GLEAN mRNA 552502 561047 0.999147 + . ID=CGI_10022282; scaffold847 TRF Tandem_Repeat 554735 554792 82 + . . scaffold847 TRF Tandem_Repeat 554735 554792 82 + . . scaffold847 TRF Tandem_Repeat 554747 554792 56 + . . scaffold847 TRF Tandem_Repeat 565483 565522 62 + . . scaffold847 TRF Tandem_Repeat 565536 565576 50 + . . scaffold847 TRF Tandem_Repeat 587665 587765 139 + . . scaffold847 GLEAN mRNA 588396 606136 0.840326 - . ID=CGI_10022283; scaffold847 WUBlastX LTR_Gypsy 597271 597369 38 - . . scaffold847 WUBlastX LTR_Gypsy 597366 597509 41 - . . scaffold847 WUBlastX LTR_Gypsy 597422 598033 203 - . . scaffold847 WUBlastX LTR_Gypsy 597521 598033 206 - . . scaffold847 WUBlastX LTR_Gypsy 597710 598033 266 - . . scaffold847 WUBlastX LTR_Gypsy 597713 598096 128 - . . scaffold847 WUBlastX LTR_Gypsy 598031 598108 28 - . . scaffold847 TRF Tandem_Repeat 598114 598150 65 + . . scaffold847 WUBlastX LTR_Gypsy 598299 598664 57 - . . scaffold847 WUBlastX LTR_Gypsy 598536 598691 21 - . . scaffold847 TRF Tandem_Repeat 600634 600710 145 + . . scaffold847 TRF Tandem_Repeat 602938 602973 63 + . . scaffold847 GLEAN promoter 606137 607136 0.840326 - . ID=CGI_10022283; scaffold847 GLEAN mRNA 611479 626054 0.417471 - . ID=CGI_10022284; scaffold847 TRF Tandem_Repeat 617030 617086 114 + . . scaffold847 GLEAN promoter 626055 627054 0.417471 - . ID=CGI_10022284; scaffold847 WUBlastX DNA_TcMar-Tc1 631265 631975 218 + . . scaffold847 WUBlastX DNA_TcMar-Tc1 631990 632226 151 + . . scaffold847 TRF Tandem_Repeat 636093 636146 99 + . . scaffold847 TRF Tandem_Repeat 637584 637619 72 + . . scaffold847 TRF Tandem_Repeat 638013 638063 57 + . . scaffold847 GLEAN mRNA 642252 643112 0.741394 - . ID=CGI_10022285; scaffold847 GLEAN promoter 643113 644112 0.741394 - . ID=CGI_10022285; scaffold847 WUBlastX LINE_L1-Tx1 657112 657237 25 - . . scaffold847 WUBlastX LINE_L1-Tx1 657749 657898 102 - . . scaffold847 TRF Tandem_Repeat 658175 658213 78 + . . scaffold847 TRF Tandem_Repeat 658457 658592 168 + . . scaffold847 TRF Tandem_Repeat 658457 658592 140 + . . scaffold847 TRF Tandem_Repeat 661479 661505 54 + . . scaffold847 WUBlastX DNA_Crypton 664356 664493 23 - . . scaffold847 WUBlastX DNA_Crypton 664486 664962 36 - . . scaffold847 TRF Tandem_Repeat 667630 667752 159 + . . scaffold847 WUBlastX DNA_IS4EU 670880 670984 58 + . . scaffold847 WUBlastX DNA_Kolobok-IS4 670904 671050 23 + . . scaffold847 WUBlastX DNA_Kolobok-IS4 671517 671588 33 + . . scaffold847 WUBlastX DNA_IS4EU 671875 672060 98 + . . scaffold847 WUBlastX DNA_Kolobok-IS4 672164 672916 315 - . . scaffold847 TRF Tandem_Repeat 677570 677619 93 + . . scaffold847 TRF Tandem_Repeat 678003 678049 94 + . . scaffold847 WUBlastX LINE_RTE-X 679432 679977 90 - . . scaffold847 WUBlastX LINE_RTE-X 679522 680016 95 - . . scaffold847 WUBlastX LINE_RTE-X 679567 679950 161 - . . scaffold847 WUBlastX LINE_RTE-X 680010 681503 872 - . . scaffold847 WUBlastX LINE_RTE-X 681503 681808 25 - . . scaffold847 WUBlastX LINE_RTE-X 681934 682701 97 - . . scaffold847 WUBlastX LINE_RTE-X 682099 682683 125 - . . scaffold847 WUBlastX LINE_RTE-X 682620 682865 33 - . . scaffold847 WUBlastX LINE_L2 683060 683347 76 - . . scaffold847 WUBlastX LINE_L1 683108 683365 104 - . . scaffold847 WUBlastX LINE_L1 683313 683633 48 - . . scaffold847 GLEAN mRNA 686154 688387 1 - . ID=CGI_10022286; scaffold847 GLEAN promoter 688388 689387 1 - . ID=CGI_10022286; scaffold847 GLEAN mRNA 692362 694303 0.995556 - . ID=CGI_10022287; scaffold847 GLEAN promoter 694304 695303 0.995556 - . ID=CGI_10022287; scaffold847 TRF Tandem_Repeat 699240 699271 64 + . . scaffold847 GLEAN mRNA 701746 708200 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_L1-Tx1 705578 706153 30 - . . scaffold847 WUBlastX LINE_L1 705725 706129 100 - . . scaffold847 WUBlastX LINE_L1-Tx1 706056 706475 116 - . . scaffold847 WUBlastX LINE_L1 706104 706454 157 - . . scaffold847 WUBlastX LINE_L1 706496 707272 78 - . . scaffold847 WUBlastX LINE_L1-Tx1 707407 707559 51 - . . scaffold847 WUBlastX LINE_L1-Tx1 707577 707807 89 - . . scaffold847 GLEAN promoter 708201 709200 0.916724 - . ID=CGI_10022288; scaffold847 WUBlastX LINE_RTE-X 708601 709080 47 - . . scaffold847 WUBlastX LINE_RTE-X 708700 709200 62 - . . scaffold847 WUBlastX LINE_RTE-X 708748 709101 63 - . . scaffold847 GLEAN promoter 710881 711880 0.965913 + . ID=CGI_10022289; scaffold847 GLEAN mRNA 711881 712129 0.965913 + . ID=CGI_10022289; scaffold847 WUBlastX DNA_hAT-Tip100 714809 715012 41 + . . scaffold847 WUBlastX DNA_hAT-Tip100 714869 715012 58 + . . scaffold847 WUBlastX DNA_hAT-Tip100 714890 715072 38 + . . scaffold847 GLEAN promoter 716457 717456 0.999914 + . ID=CGI_10022290; scaffold847 TRF Tandem_Repeat 716543 716603 61 + . . scaffold847 GLEAN mRNA 717457 719145 0.999914 + . ID=CGI_10022290; scaffold847 WUBlastX DNA_TcMar-Fot1 720822 721250 137 + . . scaffold847 WUBlastX DNA_TcMar-Fot1 721182 721535 98 + . . scaffold847 WUBlastX DNA_TcMar-Fot1 721221 721598 45 + . . scaffold847 WUBlastX LTR_Pao 721931 722116 35 + . . scaffold847 GLEAN promoter 724406 725405 0.983324 + . ID=CGI_10022291; scaffold847 GLEAN mRNA 725406 732962 0.983324 + . ID=CGI_10022291; scaffold847 TRF Tandem_Repeat 730932 731397 717 + . . scaffold847 TRF Tandem_Repeat 737610 737890 431 + . . scaffold849 WUBlastX DNA_Harbinger 8509 8988 193 + . . scaffold849 WUBlastX LINE_Penelope 8986 9225 135 + . . scaffold849 WUBlastX LINE_Penelope 9198 9389 69 + . . scaffold849 GLEAN promoter 9396 10395 0.776639 + . ID=CGI_10000827; scaffold849 WUBlastX LINE_Penelope 9397 9585 32 + . . scaffold849 GLEAN mRNA 10396 10662 0.776639 + . ID=CGI_10000827; scaffold85 WUBlastX LINE_RTE-BovB 13560 14102 352 + . . scaffold85 WUBlastX LINE_RTE-BovB 14101 14235 147 + . . scaffold85 WUBlastX LINE_RTE-BovB 14202 14453 169 + . . scaffold85 WUBlastX LINE_RTE-BovB 14464 15174 354 + . . scaffold85 WUBlastX LINE_RTE-BovB 15053 15208 56 + . . scaffold85 GLEAN promoter 15401 16400 0.80239 + . ID=CGI_10020689; scaffold85 GLEAN mRNA 16401 27330 0.80239 + . ID=CGI_10020689; scaffold85 TRF Tandem_Repeat 20776 20841 132 + . . scaffold85 TRF Tandem_Repeat 29469 29506 76 + . . scaffold85 GLEAN promoter 31325 32324 0.662858 + . ID=CGI_10020690; scaffold85 GLEAN mRNA 32325 44799 0.662858 + . ID=CGI_10020690; scaffold85 TRF Tandem_Repeat 39677 40801 1525 + . . scaffold85 TRF Tandem_Repeat 41729 41897 252 + . . scaffold85 TRF Tandem_Repeat 41823 41912 69 + . . scaffold85 TRF Tandem_Repeat 41898 43246 1426 + . . scaffold85 GLEAN mRNA 47958 66709 0.999567 - . ID=CGI_10020691; scaffold85 TRF Tandem_Repeat 48118 48162 90 + . . scaffold85 TRF Tandem_Repeat 59299 59344 56 + . . scaffold85 TRF Tandem_Repeat 61014 61073 57 + . . scaffold85 TRF Tandem_Repeat 61831 62616 408 + . . scaffold85 TRF Tandem_Repeat 61871 62623 772 + . . scaffold85 TRF Tandem_Repeat 61963 62623 748 + . . scaffold85 TRF Tandem_Repeat 64706 64863 133 + . . scaffold85 GLEAN promoter 66710 67709 0.999567 - . ID=CGI_10020691; scaffold85 GLEAN promoter 68218 69217 0.541196 + . ID=CGI_10020692; scaffold85 GLEAN mRNA 69218 80687 0.541196 + . ID=CGI_10020692; scaffold85 TRF Tandem_Repeat 69600 69696 104 + . . scaffold85 GLEAN mRNA 80694 86040 0.999459 - . ID=CGI_10020693; scaffold85 GLEAN promoter 86041 87040 0.999459 - . ID=CGI_10020693; scaffold85 GLEAN mRNA 88976 103899 0.999481 - . ID=CGI_10020694; scaffold85 TRF Tandem_Repeat 91460 91719 195 + . . scaffold85 TRF Tandem_Repeat 91754 92049 556 + . . scaffold85 TRF Tandem_Repeat 92023 92141 118 + . . scaffold85 TRF Tandem_Repeat 94510 94548 78 + . . scaffold85 TRF Tandem_Repeat 96219 96259 82 + . . scaffold85 GLEAN promoter 103900 104899 0.999481 - . ID=CGI_10020694; scaffold85 GLEAN mRNA 112720 125659 0.432389 - . ID=CGI_10020695; scaffold85 TRF Tandem_Repeat 119626 119658 57 + . . scaffold85 GLEAN promoter 125660 126659 0.432389 - . ID=CGI_10020695; scaffold85 TRF Tandem_Repeat 129416 129445 53 + . . scaffold85 WUBlastX DNA_Harbinger 130138 130617 55 + . . scaffold85 WUBlastX DNA_Harbinger 130144 130485 90 + . . scaffold85 WUBlastX DNA_Harbinger 130595 130714 88 + . . scaffold85 TRF Tandem_Repeat 136606 136662 87 + . . scaffold85 GLEAN mRNA 138898 151201 0.858896 - . ID=CGI_10020696; scaffold85 TRF Tandem_Repeat 142960 143007 96 + . . scaffold85 TRF Tandem_Repeat 146777 146827 102 + . . scaffold85 TRF Tandem_Repeat 147427 147457 62 + . . scaffold85 GLEAN promoter 151202 152201 0.858896 - . ID=CGI_10020696; scaffold85 WUBlastX LINE_L1-Tx1 153447 153722 35 + . . scaffold85 WUBlastX LINE_L1-Tx1 153504 153728 45 + . . scaffold85 WUBlastX LINE_L1-Tx1 153704 153883 67 + . . scaffold85 WUBlastX LINE_L1-Tx1 153704 153844 75 + . . scaffold85 TRF Tandem_Repeat 154769 154888 80 + . . scaffold85 TRF Tandem_Repeat 156101 156135 70 + . . scaffold85 TRF Tandem_Repeat 167612 167680 138 + . . scaffold85 GLEAN mRNA 179644 179859 0.979101 - . ID=CGI_10020697; scaffold85 GLEAN promoter 179860 180859 0.979101 - . ID=CGI_10020697; scaffold85 GLEAN mRNA 185202 222737 0.999554 - . ID=CGI_10020698; scaffold85 TRF Tandem_Repeat 215579 215609 53 + . . scaffold85 TRF Tandem_Repeat 220697 220729 66 + . . scaffold85 GLEAN promoter 222507 223506 0.61441 + . ID=CGI_10020699; scaffold85 GLEAN promoter 222738 223737 0.999554 - . ID=CGI_10020698; scaffold85 GLEAN mRNA 223507 231143 0.61441 + . ID=CGI_10020699; scaffold85 TRF Tandem_Repeat 234496 234522 54 + . . scaffold85 GLEAN promoter 234887 235886 0.728519 + . ID=CGI_10020700; scaffold85 GLEAN mRNA 235887 255641 0.728519 + . ID=CGI_10020700; scaffold85 TRF Tandem_Repeat 236396 236448 106 + . . scaffold85 TRF Tandem_Repeat 236503 236555 65 + . . scaffold85 TRF Tandem_Repeat 241939 242005 89 + . . scaffold85 TRF Tandem_Repeat 242496 242529 68 + . . scaffold85 TRF Tandem_Repeat 242527 242559 66 + . . scaffold85 TRF Tandem_Repeat 242747 242795 98 + . . scaffold85 TRF Tandem_Repeat 245184 245250 80 + . . scaffold85 WUBlastX LTR_Ngaro 259933 260088 39 + . . scaffold85 WUBlastX LTR_Ngaro 259972 260088 39 + . . scaffold85 WUBlastX LTR_Ngaro 260072 260812 629 + . . scaffold85 WUBlastX LTR_Ngaro 260785 261309 182 + . . scaffold85 TRF Tandem_Repeat 261345 261473 59 + . . scaffold85 WUBlastX LTR_Ngaro 261725 262207 77 + . . scaffold85 WUBlastX LTR_Ngaro 261818 262213 153 + . . scaffold85 GLEAN promoter 262991 263990 0.979744 + . ID=CGI_10020701; scaffold85 GLEAN mRNA 263991 286359 0.979744 + . ID=CGI_10020701; scaffold85 TRF Tandem_Repeat 264343 264701 517 + . . scaffold85 TRF Tandem_Repeat 264491 264602 71 + . . scaffold85 TRF Tandem_Repeat 272805 272961 99 + . . scaffold85 GLEAN promoter 286045 287044 0.993562 + . ID=CGI_10020702; scaffold85 GLEAN mRNA 287045 287433 0.993562 + . ID=CGI_10020702; scaffold85 WUBlastX LINE_L1-Tx1 288683 288748 25 - . . scaffold85 WUBlastX LINE_L1 288729 289154 34 - . . scaffold85 WUBlastX LINE_L1-Tx1 288918 289199 64 - . . scaffold85 WUBlastX LINE_L1-Tx1 289135 290391 416 - . . scaffold85 TRF Tandem_Repeat 315650 317272 1938 + . . scaffold85 TRF Tandem_Repeat 315761 315825 53 + . . scaffold85 TRF Tandem_Repeat 332418 332461 88 + . . scaffold85 GLEAN mRNA 332841 357883 0.849566 - . ID=CGI_10020703; scaffold85 WUBlastX LTR_Gypsy-Cigr 351874 353313 809 - . . scaffold85 WUBlastX LTR_Gypsy-Cigr 353334 354164 646 - . . scaffold85 WUBlastX LTR_Gypsy 353439 354350 335 - . . scaffold85 WUBlastX LTR_Gypsy 354345 354545 31 - . . scaffold85 GLEAN promoter 354656 355655 0.994276 + . ID=CGI_10020704; scaffold85 GLEAN mRNA 355656 359738 0.994276 + . ID=CGI_10020704; scaffold85 GLEAN promoter 357884 358883 0.849566 - . ID=CGI_10020703; scaffold85 WUBlastX LTR_Gypsy 362336 362431 24 - . . scaffold85 WUBlastX LTR_ERV-Foamy 362381 362452 22 - . . scaffold85 WUBlastX LTR_Gypsy 363100 363534 164 - . . scaffold85 WUBlastX LTR_Gypsy-Cigr 363100 363441 314 - . . scaffold85 WUBlastX LTR_Gypsy-Cigr 363440 364309 160 - . . scaffold85 WUBlastX LTR_Gypsy 364320 364445 41 - . . scaffold85 WUBlastX LINE_CR1 365337 365774 92 - . . scaffold85 WUBlastX LINE_CR1 365409 365795 138 - . . scaffold85 WUBlastX LINE_CR1 365749 366051 226 - . . scaffold85 WUBlastX LINE_CR1 365752 366345 159 - . . scaffold85 GLEAN promoter 389093 390092 0.490241 + . ID=CGI_10020705; scaffold85 GLEAN mRNA 390093 393777 0.490241 + . ID=CGI_10020705; scaffold85 WUBlastX DNA_Kolobok-Hyd 390273 390677 28 + . . scaffold85 TRF Tandem_Repeat 405401 405436 72 + . . scaffold85 TRF Tandem_Repeat 410451 410505 110 + . . scaffold85 TRF Tandem_Repeat 410988 411031 88 + . . scaffold85 GLEAN promoter 428658 429657 1 + . ID=CGI_10020706; scaffold85 GLEAN mRNA 429658 430097 1 + . ID=CGI_10020706; scaffold85 GLEAN promoter 442161 443160 0.999618 + . ID=CGI_10020707; scaffold85 GLEAN mRNA 443161 444393 0.999618 + . ID=CGI_10020707; scaffold85 WUBlastX LINE_R2-Hero 445931 446059 24 - . . scaffold85 WUBlastX LINE_R2-Hero 445988 446059 26 - . . scaffold85 WUBlastX LINE_R2-Hero 446383 446643 57 - . . scaffold85 WUBlastX LINE_R2-Hero 446709 446792 20 - . . scaffold85 GLEAN promoter 448811 449810 0.783922 + . ID=CGI_10020708; scaffold85 GLEAN mRNA 449811 461231 0.783922 + . ID=CGI_10020708; scaffold85 TRF Tandem_Repeat 457966 458051 57 + . . scaffold85 TRF Tandem_Repeat 460681 460715 61 + . . scaffold85 GLEAN mRNA 469397 484332 0.999676 - . ID=CGI_10020709; scaffold85 TRF Tandem_Repeat 479795 479877 72 + . . scaffold85 TRF Tandem_Repeat 479796 479881 52 + . . scaffold85 TRF Tandem_Repeat 479796 479877 94 + . . scaffold85 TRF Tandem_Repeat 480974 481015 84 + . . scaffold85 GLEAN promoter 483463 484462 0.887509 + . ID=CGI_10020710; scaffold85 GLEAN promoter 484333 485332 0.999676 - . ID=CGI_10020709; scaffold85 GLEAN mRNA 484463 496588 0.887509 + . ID=CGI_10020710; scaffold85 TRF Tandem_Repeat 522364 522419 112 + . . scaffold85 GLEAN mRNA 534676 540289 0.593381 - . ID=CGI_10020711; scaffold85 TRF Tandem_Repeat 535337 535434 124 + . . scaffold85 GLEAN promoter 540290 541289 0.593381 - . ID=CGI_10020711; scaffold85 GLEAN promoter 541529 542528 0.999735 + . ID=CGI_10020712; scaffold85 GLEAN mRNA 542529 548670 0.999735 + . ID=CGI_10020712; scaffold85 TRF Tandem_Repeat 543873 543934 124 + . . scaffold85 GLEAN mRNA 551161 566280 0.612885 - . ID=CGI_10020713; scaffold85 TRF Tandem_Repeat 553035 553323 330 + . . scaffold85 GLEAN promoter 566281 567280 0.612885 - . ID=CGI_10020713; scaffold85 GLEAN promoter 566944 567943 0.536805 + . ID=CGI_10020714; scaffold85 GLEAN mRNA 567944 573952 0.536805 + . ID=CGI_10020714; scaffold85 GLEAN promoter 576051 577050 1 + . ID=CGI_10020715; scaffold85 GLEAN mRNA 577051 577612 1 + . ID=CGI_10020715; scaffold85 GLEAN mRNA 578533 581003 1 - . ID=CGI_10020716; scaffold85 GLEAN promoter 581004 582003 1 - . ID=CGI_10020716; scaffold85 TRF Tandem_Repeat 583585 583694 75 + . . scaffold85 TRF Tandem_Repeat 586588 586765 80 + . . scaffold85 TRF Tandem_Repeat 587607 587650 88 + . . scaffold85 TRF Tandem_Repeat 588662 588703 75 + . . scaffold85 TRF Tandem_Repeat 588815 588847 66 + . . scaffold85 TRF Tandem_Repeat 592793 592821 58 + . . scaffold85 GLEAN mRNA 593677 601322 0.54615 - . ID=CGI_10020717; scaffold85 TRF Tandem_Repeat 596436 596627 186 + . . scaffold85 GLEAN promoter 601323 602322 0.54615 - . ID=CGI_10020717; scaffold85 WUBlastX LTR_Gypsy 601958 603694 1145 + . . scaffold85 WUBlastX LTR_Gypsy 602222 605056 2011 + . . scaffold85 WUBlastX LTR_Gypsy 603725 605302 405 + . . scaffold85 GLEAN promoter 604361 605360 1 + . ID=CGI_10020718; scaffold85 GLEAN mRNA 605361 606053 1 + . ID=CGI_10020718; scaffold85 WUBlastX LINE_L2 607601 608017 80 + . . scaffold85 WUBlastX LINE_CR1 607715 608635 109 + . . scaffold85 WUBlastX LINE_CR1 607724 608179 130 + . . scaffold85 WUBlastX LINE_CR1 607724 608083 131 + . . scaffold85 WUBlastX LINE_CR1 607724 608002 142 + . . scaffold85 GLEAN mRNA 611975 636254 1 - . ID=CGI_10020719; scaffold85 WUBlastX LINE_L2 616593 617498 397 - . . scaffold85 WUBlastX LINE_L2 617470 618390 563 - . . scaffold85 TRF Tandem_Repeat 619470 619494 50 + . . scaffold85 WUBlastX LINE_RTE-X 622680 622967 40 + . . scaffold85 TRF Tandem_Repeat 623354 623388 61 + . . scaffold85 WUBlastX LTR_Gypsy 634497 635528 127 - . . scaffold85 WUBlastX LTR_Gypsy 634689 636224 51 - . . scaffold85 WUBlastX LTR_Gypsy 634956 635927 187 - . . scaffold85 WUBlastX LTR_Gypsy-Cigr 635274 635873 194 - . . scaffold85 WUBlastX LTR_Gypsy-Cigr 635280 635756 197 - . . scaffold85 GLEAN promoter 636255 637254 1 - . ID=CGI_10020719; scaffold85 GLEAN promoter 637129 638128 0.84345 + . ID=CGI_10020720; scaffold85 TRF Tandem_Repeat 637883 637912 60 + . . scaffold85 GLEAN mRNA 638129 652398 0.84345 + . ID=CGI_10020720; scaffold850 GLEAN mRNA 642 18897 0.999668 - . ID=CGI_10011232; scaffold850 TRF Tandem_Repeat 9300 10018 490 + . . scaffold850 TRF Tandem_Repeat 9415 9545 109 + . . scaffold850 TRF Tandem_Repeat 9427 10014 366 + . . scaffold850 TRF Tandem_Repeat 9528 10013 336 + . . scaffold850 GLEAN promoter 18898 19897 0.999668 - . ID=CGI_10011232; scaffold850 GLEAN promoter 25892 26891 0.99995 + . ID=CGI_10011233; scaffold850 GLEAN mRNA 26892 40215 0.99995 + . ID=CGI_10011233; scaffold850 TRF Tandem_Repeat 40804 40848 90 + . . scaffold850 TRF Tandem_Repeat 42169 42965 1017 + . . scaffold850 TRF Tandem_Repeat 43984 44027 88 + . . scaffold850 GLEAN mRNA 48061 72012 0.992466 - . ID=CGI_10011234; scaffold850 TRF Tandem_Repeat 49081 49148 127 + . . scaffold850 TRF Tandem_Repeat 50989 51320 284 + . . scaffold850 TRF Tandem_Repeat 52561 53094 650 + . . scaffold850 TRF Tandem_Repeat 52587 53085 349 + . . scaffold850 TRF Tandem_Repeat 52634 53094 590 + . . scaffold850 TRF Tandem_Repeat 53207 53639 435 + . . scaffold850 TRF Tandem_Repeat 54493 54532 80 + . . scaffold850 TRF Tandem_Repeat 64960 65007 87 + . . scaffold850 TRF Tandem_Repeat 67599 67655 114 + . . scaffold850 TRF Tandem_Repeat 70615 70650 65 + . . scaffold850 TRF Tandem_Repeat 70866 71199 342 + . . scaffold850 TRF Tandem_Repeat 70883 71248 313 + . . scaffold850 TRF Tandem_Repeat 70896 71246 384 + . . scaffold850 TRF Tandem_Repeat 70956 71248 160 + . . scaffold850 TRF Tandem_Repeat 71122 71216 76 + . . scaffold850 GLEAN promoter 72013 73012 0.992466 - . ID=CGI_10011234; scaffold850 WUBlastX LTR_DIRS 75526 75714 50 - . . scaffold850 WUBlastX LTR_DIRS 75976 76251 48 - . . scaffold850 WUBlastX LTR_DIRS 76586 77425 115 - . . scaffold850 WUBlastX LTR_DIRS 76718 77434 136 - . . scaffold850 WUBlastX LTR_DIRS 77503 77868 72 - . . scaffold850 WUBlastX LTR_DIRS 77569 77901 121 - . . scaffold850 GLEAN promoter 82584 83583 0.309755 + . ID=CGI_10011236; scaffold850 GLEAN mRNA 83584 111933 0.309755 + . ID=CGI_10011236; scaffold850 TRF Tandem_Repeat 84097 84164 127 + . . scaffold850 TRF Tandem_Repeat 85723 86075 472 + . . scaffold850 TRF Tandem_Repeat 85723 86075 490 + . . scaffold850 TRF Tandem_Repeat 90067 90441 464 + . . scaffold850 TRF Tandem_Repeat 90516 90966 875 + . . scaffold850 TRF Tandem_Repeat 91104 91170 71 + . . scaffold850 TRF Tandem_Repeat 95579 95636 53 + . . scaffold850 TRF Tandem_Repeat 95592 95660 84 + . . scaffold850 TRF Tandem_Repeat 98540 98829 285 + . . scaffold850 TRF Tandem_Repeat 98867 99580 531 + . . scaffold850 TRF Tandem_Repeat 109991 110045 110 + . . scaffold850 TRF Tandem_Repeat 110997 111227 320 + . . scaffold850 GLEAN promoter 111317 112316 0.466564 + . ID=CGI_10011237; scaffold850 GLEAN mRNA 112317 135089 0.466564 + . ID=CGI_10011237; scaffold850 TRF Tandem_Repeat 115241 115295 85 + . . scaffold850 TRF Tandem_Repeat 115242 115298 62 + . . scaffold850 TRF Tandem_Repeat 115248 115298 75 + . . scaffold850 TRF Tandem_Repeat 116322 117414 1570 + . . scaffold850 TRF Tandem_Repeat 118008 118083 98 + . . scaffold850 TRF Tandem_Repeat 118008 118083 80 + . . scaffold850 TRF Tandem_Repeat 119712 120134 609 + . . scaffold850 TRF Tandem_Repeat 124127 124624 761 + . . scaffold850 TRF Tandem_Repeat 126393 126704 293 + . . scaffold850 GLEAN mRNA 126896 127048 0.615567 - . ID=CGI_10011238; scaffold850 GLEAN promoter 127049 128048 0.615567 - . ID=CGI_10011238; scaffold850 TRF Tandem_Repeat 127103 127292 96 + . . scaffold850 TRF Tandem_Repeat 127115 127252 112 + . . scaffold850 TRF Tandem_Repeat 127262 127294 66 + . . scaffold850 TRF Tandem_Repeat 128928 130457 2386 + . . scaffold850 TRF Tandem_Repeat 131903 132025 93 + . . scaffold850 GLEAN mRNA 133167 161922 0.294252 - . ID=CGI_10011239; scaffold850 TRF Tandem_Repeat 139812 139847 72 + . . scaffold850 TRF Tandem_Repeat 142935 143108 156 + . . scaffold850 TRF Tandem_Repeat 142948 143086 111 + . . scaffold850 TRF Tandem_Repeat 148763 148810 78 + . . scaffold850 TRF Tandem_Repeat 152226 152525 501 + . . scaffold850 TRF Tandem_Repeat 154331 154357 54 + . . scaffold850 TRF Tandem_Repeat 155037 155080 88 + . . scaffold850 TRF Tandem_Repeat 155439 155485 94 + . . scaffold850 TRF Tandem_Repeat 157153 157178 52 + . . scaffold850 TRF Tandem_Repeat 157484 157789 336 + . . scaffold850 TRF Tandem_Repeat 158392 158422 62 + . . scaffold850 GLEAN promoter 161923 162922 0.294252 - . ID=CGI_10011239; scaffold850 GLEAN promoter 166001 167000 0.999996 + . ID=CGI_10011240; scaffold850 GLEAN mRNA 167001 168127 0.999996 + . ID=CGI_10011240; scaffold850 GLEAN promoter 168501 169500 0.999999 + . ID=CGI_10011241; scaffold850 GLEAN mRNA 169501 170943 0.999999 + . ID=CGI_10011241; scaffold850 GLEAN promoter 171172 172171 1 + . ID=CGI_10011242; scaffold850 TRF Tandem_Repeat 171714 172012 589 + . . scaffold850 GLEAN mRNA 172172 174223 1 + . ID=CGI_10011242; scaffold850 TRF Tandem_Repeat 173197 173351 229 + . . scaffold850 TRF Tandem_Repeat 173203 173351 165 + . . scaffold850 TRF Tandem_Repeat 173203 173377 163 + . . scaffold850 TRF Tandem_Repeat 175825 175853 58 + . . scaffold850 TRF Tandem_Repeat 182091 182126 72 + . . scaffold850 TRF Tandem_Repeat 186512 186971 661 + . . scaffold850 TRF Tandem_Repeat 187937 187971 70 + . . scaffold850 TRF Tandem_Repeat 189060 189109 100 + . . scaffold850 TRF Tandem_Repeat 189962 190151 227 + . . scaffold850 GLEAN promoter 191474 192473 0.558395 + . ID=CGI_10011243; scaffold850 GLEAN mRNA 192474 197380 0.558395 + . ID=CGI_10011243; scaffold850 TRF Tandem_Repeat 196651 196929 540 + . . scaffold850 GLEAN promoter 201319 202318 0.999998 + . ID=CGI_10011244; scaffold850 GLEAN mRNA 202319 219168 0.999998 + . ID=CGI_10011244; scaffold850 TRF Tandem_Repeat 208149 208385 339 + . . scaffold850 TRF Tandem_Repeat 208149 208363 334 + . . scaffold850 TRF Tandem_Repeat 208880 209130 403 + . . scaffold850 TRF Tandem_Repeat 209189 209300 206 + . . scaffold850 TRF Tandem_Repeat 209200 209318 94 + . . scaffold850 TRF Tandem_Repeat 209626 209655 60 + . . scaffold850 TRF Tandem_Repeat 215712 215747 72 + . . scaffold850 TRF Tandem_Repeat 219378 219531 281 + . . scaffold850 TRF Tandem_Repeat 221306 222122 1249 + . . scaffold850 TRF Tandem_Repeat 223795 224127 504 + . . scaffold850 TRF Tandem_Repeat 226603 226723 118 + . . scaffold850 TRF Tandem_Repeat 228163 228214 104 + . . scaffold850 TRF Tandem_Repeat 228702 228741 71 + . . scaffold850 TRF Tandem_Repeat 231931 231978 96 + . . scaffold850 TRF Tandem_Repeat 233874 233921 96 + . . scaffold850 GLEAN promoter 236823 237822 0.476308 + . ID=CGI_10011245; scaffold850 GLEAN mRNA 237823 241646 0.476308 + . ID=CGI_10011245; scaffold850 GLEAN mRNA 242129 244344 0.992152 - . ID=CGI_10011246; scaffold850 GLEAN promoter 244345 245344 0.992152 - . ID=CGI_10011246; scaffold850 TRF Tandem_Repeat 249762 249833 144 + . . scaffold850 GLEAN mRNA 250988 286375 0.455159 - . ID=CGI_10011247; scaffold850 TRF Tandem_Repeat 257211 257265 110 + . . scaffold850 TRF Tandem_Repeat 278684 280409 1918 + . . scaffold850 GLEAN promoter 286376 286661 0.455159 - . ID=CGI_10011247; scaffold851 WUBlastX LTR_Gypsy 1251 5387 3368 - . . scaffold851 TRF Tandem_Repeat 6583 6812 266 + . . scaffold852 GLEAN promoter 4964 5963 0.744481 + . ID=CGI_10012031; scaffold852 GLEAN mRNA 5964 6894 0.744481 + . ID=CGI_10012031; scaffold852 WUBlastX DNA_Merlin 11814 12242 128 + . . scaffold852 WUBlastX DNA_PiggyBac 23616 24023 152 - . . scaffold852 WUBlastX DNA_PiggyBac 23691 24191 101 - . . scaffold852 WUBlastX LINE_L2 34896 35135 61 + . . scaffold852 GLEAN promoter 41591 42590 1 + . ID=CGI_10012033; scaffold852 GLEAN mRNA 42591 51134 1 + . ID=CGI_10012033; scaffold852 TRF Tandem_Repeat 46350 46389 71 + . . scaffold852 GLEAN mRNA 46446 54395 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_Kolobok-IS4 50373 51098 314 + . . scaffold852 WUBlastX DNA_IS4EU 51471 51782 59 - . . scaffold852 WUBlastX DNA_IS4EU 51537 51707 74 - . . scaffold852 WUBlastX DNA_IS4EU 51841 51924 27 - . . scaffold852 WUBlastX DNA_IS4EU 51859 51927 34 - . . scaffold852 WUBlastX DNA_IS4EU 52009 52047 22 - . . scaffold852 WUBlastX DNA_IS4EU 52202 52348 23 - . . scaffold852 WUBlastX DNA_Kolobok-IS4 52443 52595 20 - . . scaffold852 WUBlastX DNA_IS4EU 52515 52598 54 - . . scaffold852 GLEAN promoter 54396 55395 0.990384 - . ID=CGI_10012034; scaffold852 WUBlastX DNA_TcMar-Tc2 58288 58587 71 + . . scaffold852 WUBlastX LTR_Gypsy 62338 62490 74 - . . scaffold852 WUBlastX LTR_Gypsy 62356 62607 73 - . . scaffold852 WUBlastX LTR_Gypsy 63043 63219 20 - . . scaffold852 WUBlastX LTR_Copia 63468 64412 517 - . . scaffold852 GLEAN promoter 65203 66202 1 + . ID=CGI_10012036; scaffold852 GLEAN mRNA 65665 66525 0.757175 - . ID=CGI_10012035; scaffold852 GLEAN mRNA 66203 74351 1 + . ID=CGI_10012036; scaffold852 GLEAN promoter 66526 67525 0.757175 - . ID=CGI_10012035; scaffold852 WUBlastX LTR_Gypsy 66624 67109 27 - . . scaffold852 WUBlastX LTR_Gypsy 66714 70346 1793 - . . scaffold852 WUBlastX LTR_Gypsy-Cigr 66717 69767 2144 - . . scaffold852 WUBlastX LTR_Copia 70349 70744 67 - . . scaffold852 WUBlastX LTR_Gypsy 70439 71233 76 - . . scaffold852 WUBlastX LTR_Gypsy-Cigr 70439 71098 209 - . . scaffold852 GLEAN promoter 74281 75280 0.790855 + . ID=CGI_10012037; scaffold852 GLEAN mRNA 75281 91655 0.790855 + . ID=CGI_10012037; scaffold852 GLEAN mRNA 80782 88477 1 - . ID=CGI_10012038; scaffold852 GLEAN promoter 88478 89477 1 - . ID=CGI_10012038; scaffold852 TRF Tandem_Repeat 90073 90119 94 + . . scaffold852 TRF Tandem_Repeat 90525 90592 136 + . . scaffold852 TRF Tandem_Repeat 91207 91234 56 + . . scaffold852 TRF Tandem_Repeat 105275 105330 62 + . . scaffold852 WUBlastX LTR_Ngaro 105398 105952 177 + . . scaffold852 WUBlastX LTR_Ngaro 105440 106174 111 + . . scaffold852 WUBlastX LTR_Ngaro 105557 106006 217 + . . scaffold852 WUBlastX LTR_Ngaro 106260 106922 442 + . . scaffold852 TRF Tandem_Repeat 112609 113102 360 + . . scaffold852 TRF Tandem_Repeat 112609 113102 467 + . . scaffold852 TRF Tandem_Repeat 112637 113102 610 + . . scaffold852 TRF Tandem_Repeat 113880 114125 108 + . . scaffold852 TRF Tandem_Repeat 113939 114176 184 + . . scaffold852 TRF Tandem_Repeat 114022 114125 136 + . . scaffold852 WUBlastX LINE_L2 116293 116766 96 + . . scaffold852 WUBlastX LINE_L2 117314 117400 33 + . . scaffold852 GLEAN promoter 120104 121103 1 + . ID=CGI_10012039; scaffold852 TRF Tandem_Repeat 120838 120863 52 + . . scaffold852 GLEAN mRNA 121104 128274 1 + . ID=CGI_10012039; scaffold852 WUBlastX DNA_Merlin 121898 122167 47 + . . scaffold852 TRF Tandem_Repeat 125447 125488 77 + . . scaffold852 WUBlastX DNA_Kolobok-IS4 126724 127212 83 + . . scaffold852 WUBlastX DNA_IS4EU 126817 127212 90 + . . scaffold852 WUBlastX DNA_IS4EU 127389 127541 52 + . . scaffold852 TRF Tandem_Repeat 128323 128405 166 + . . scaffold852 WUBlastX DNA_Sola 132341 132523 56 + . . scaffold852 TRF Tandem_Repeat 143578 143611 68 + . . scaffold852 WUBlastX LINE_RTE-X 147437 147796 96 - . . scaffold852 WUBlastX LINE_RTE-X 147458 147967 78 - . . scaffold852 WUBlastX LINE_RTE-X 147554 147874 94 - . . scaffold852 GLEAN promoter 153892 154891 0.933872 + . ID=CGI_10012040; scaffold852 GLEAN mRNA 154892 173695 0.933872 + . ID=CGI_10012040; scaffold852 TRF Tandem_Repeat 158244 158339 192 + . . scaffold852 TRF Tandem_Repeat 164877 165027 178 + . . scaffold852 TRF Tandem_Repeat 166546 166595 82 + . . scaffold852 WUBlastX LTR_Ngaro 169586 170152 172 - . . scaffold852 TRF Tandem_Repeat 170504 170617 126 + . . scaffold852 TRF Tandem_Repeat 170711 170890 135 + . . scaffold852 WUBlastX LINE_L1-Tx1 184750 184974 53 - . . scaffold852 WUBlastX LINE_L1-Tx1 184774 185292 43 - . . scaffold852 WUBlastX LINE_L1 185264 185332 33 - . . scaffold852 WUBlastX LINE_L1-Tx1 185343 185483 136 - . . scaffold852 WUBlastX LINE_L1-Tx1 185352 185525 78 - . . scaffold852 WUBlastX LINE_L1-Tx1 185465 185575 51 - . . scaffold852 WUBlastX LINE_L1 185465 185596 24 - . . scaffold852 GLEAN promoter 185573 186572 0.533829 + . ID=CGI_10012041; scaffold852 GLEAN mRNA 186573 193041 0.533829 + . ID=CGI_10012041; scaffold852 TRF Tandem_Repeat 192456 192731 226 + . . scaffold852 TRF Tandem_Repeat 192512 193262 378 + . . scaffold852 TRF Tandem_Repeat 192512 192825 266 + . . scaffold852 TRF Tandem_Repeat 192527 193262 445 + . . scaffold852 TRF Tandem_Repeat 192828 193006 88 + . . scaffold852 TRF Tandem_Repeat 194003 194049 94 + . . scaffold852 TRF Tandem_Repeat 197897 197929 66 + . . scaffold852 GLEAN mRNA 198452 201353 0.394154 - . ID=CGI_10012042; scaffold852 GLEAN promoter 201354 202353 0.394154 - . ID=CGI_10012042; scaffold852 TRF Tandem_Repeat 206786 206860 114 + . . scaffold852 TRF Tandem_Repeat 207100 207128 58 + . . scaffold852 TRF Tandem_Repeat 207208 207257 100 + . . scaffold852 TRF Tandem_Repeat 208598 208643 92 + . . scaffold852 TRF Tandem_Repeat 212225 212267 86 + . . scaffold852 TRF Tandem_Repeat 212515 212556 84 + . . scaffold852 TRF Tandem_Repeat 213340 213384 81 + . . scaffold852 TRF Tandem_Repeat 214855 214881 54 + . . scaffold852 TRF Tandem_Repeat 216542 216569 56 + . . scaffold852 TRF Tandem_Repeat 224881 225184 173 + . . scaffold852 GLEAN promoter 227347 228346 0.9028 + . ID=CGI_10012043; scaffold852 GLEAN mRNA 228347 261177 0.9028 + . ID=CGI_10012043; scaffold852 TRF Tandem_Repeat 240305 240665 652 + . . scaffold852 TRF Tandem_Repeat 249310 249350 82 + . . scaffold852 TRF Tandem_Repeat 250633 251262 864 + . . scaffold852 TRF Tandem_Repeat 250639 251257 829 + . . scaffold852 TRF Tandem_Repeat 252441 254099 1975 + . . scaffold852 TRF Tandem_Repeat 265774 265806 50 + . . scaffold852 TRF Tandem_Repeat 266506 266549 72 + . . scaffold852 GLEAN promoter 270364 271363 0.996496 + . ID=CGI_10012044; scaffold852 GLEAN mRNA 271364 304704 0.996496 + . ID=CGI_10012044; scaffold852 TRF Tandem_Repeat 275658 275711 108 + . . scaffold853 TRF Tandem_Repeat 2665 2931 422 + . . scaffold853 GLEAN mRNA 3642 26457 0.95625 - . ID=CGI_10017479; scaffold853 TRF Tandem_Repeat 8210 8244 54 + . . scaffold853 TRF Tandem_Repeat 9700 10146 602 + . . scaffold853 TRF Tandem_Repeat 10252 10307 112 + . . scaffold853 TRF Tandem_Repeat 11477 11530 108 + . . scaffold853 TRF Tandem_Repeat 13936 14097 270 + . . scaffold853 TRF Tandem_Repeat 19429 19473 56 + . . scaffold853 TRF Tandem_Repeat 23545 24288 1123 + . . scaffold853 GLEAN promoter 26458 27457 0.95625 - . ID=CGI_10017479; scaffold853 GLEAN mRNA 40979 44696 0.999938 - . ID=CGI_10017480; scaffold853 GLEAN promoter 44697 45696 0.999938 - . ID=CGI_10017480; scaffold853 TRF Tandem_Repeat 46676 48159 1593 + . . scaffold853 TRF Tandem_Repeat 52050 52100 102 + . . scaffold853 TRF Tandem_Repeat 52647 52697 102 + . . scaffold853 WUBlastX LINE_RTE-X 55208 55330 50 - . . scaffold853 WUBlastX LINE_RTE-X 55208 55444 26 - . . scaffold853 WUBlastX LINE_Proto2 55450 55785 54 - . . scaffold853 GLEAN promoter 56136 57135 0.999995 + . ID=CGI_10017481; scaffold853 TRF Tandem_Repeat 56968 56997 51 + . . scaffold853 GLEAN mRNA 57136 62989 0.999995 + . ID=CGI_10017481; scaffold853 GLEAN mRNA 62309 75479 0.997691 - . ID=CGI_10017482; scaffold853 TRF Tandem_Repeat 63345 64047 1080 + . . scaffold853 GLEAN promoter 75480 76479 0.997691 - . ID=CGI_10017482; scaffold853 WUBlastX LTR_DIRS 84457 84720 51 - . . scaffold853 WUBlastX LTR_DIRS 84684 84866 28 - . . scaffold853 GLEAN mRNA 86410 87225 0.999429 - . ID=CGI_10017483; scaffold853 GLEAN promoter 87226 88225 0.999429 - . ID=CGI_10017483; scaffold853 GLEAN mRNA 87557 94068 0.997881 - . ID=CGI_10017484; scaffold853 GLEAN promoter 93628 94627 1 + . ID=CGI_10017485; scaffold853 GLEAN promoter 94069 95068 0.997881 - . ID=CGI_10017484; scaffold853 GLEAN mRNA 94628 97353 1 + . ID=CGI_10017485; scaffold853 GLEAN mRNA 101232 106344 0.585203 - . ID=CGI_10017486; scaffold853 GLEAN promoter 106345 107344 0.585203 - . ID=CGI_10017486; scaffold853 GLEAN promoter 112176 113175 0.999998 + . ID=CGI_10017487; scaffold853 GLEAN mRNA 113176 114622 0.999998 + . ID=CGI_10017487; scaffold853 GLEAN promoter 114759 115758 0.999996 + . ID=CGI_10017488; scaffold853 GLEAN mRNA 115759 118089 0.999996 + . ID=CGI_10017488; scaffold853 GLEAN mRNA 120175 131726 0.995916 - . ID=CGI_10017489; scaffold853 GLEAN promoter 127968 128967 0.749882 + . ID=CGI_10017490; scaffold853 GLEAN mRNA 128968 137678 0.749882 + . ID=CGI_10017490; scaffold853 GLEAN promoter 131727 132726 0.995916 - . ID=CGI_10017489; scaffold853 TRF Tandem_Repeat 134462 134539 53 + . . scaffold853 GLEAN promoter 140131 141130 0.999675 + . ID=CGI_10017491; scaffold853 GLEAN mRNA 141131 169627 0.999675 + . ID=CGI_10017491; scaffold853 TRF Tandem_Repeat 149036 149097 81 + . . scaffold853 GLEAN mRNA 158430 159884 0.995579 - . ID=CGI_10017492; scaffold853 GLEAN promoter 159885 160884 0.995579 - . ID=CGI_10017492; scaffold853 TRF Tandem_Repeat 168471 168501 62 + . . scaffold853 WUBlastX LINE_RTE-BovB 174610 174951 90 + . . scaffold853 WUBlastX LINE_RTE-BovB 175070 175468 77 + . . scaffold853 WUBlastX LINE_RTE-BovB 175326 176204 129 + . . scaffold853 WUBlastX LINE_RTE-BovB 176164 176328 43 + . . scaffold853 WUBlastX LINE_RTE-BovB 176164 176247 57 + . . scaffold853 WUBlastX LINE_RTE-BovB 176428 176658 27 + . . scaffold853 WUBlastX LINE_RTE-BovB 176464 176658 92 + . . scaffold853 TRF Tandem_Repeat 176663 176717 110 + . . scaffold853 TRF Tandem_Repeat 177472 177835 197 + . . scaffold853 TRF Tandem_Repeat 177516 177770 166 + . . scaffold853 TRF Tandem_Repeat 177546 177680 91 + . . scaffold853 TRF Tandem_Repeat 178981 179338 169 + . . scaffold853 TRF Tandem_Repeat 179016 179294 206 + . . scaffold853 TRF Tandem_Repeat 179038 179189 93 + . . scaffold853 TRF Tandem_Repeat 179039 179296 190 + . . scaffold853 TRF Tandem_Repeat 179039 179294 198 + . . scaffold853 TRF Tandem_Repeat 179489 179852 181 + . . scaffold853 TRF Tandem_Repeat 179490 179695 156 + . . scaffold853 TRF Tandem_Repeat 180929 181219 243 + . . scaffold853 TRF Tandem_Repeat 180929 181283 254 + . . scaffold853 TRF Tandem_Repeat 184879 184937 109 + . . scaffold853 GLEAN mRNA 188362 200234 0.597248 - . ID=CGI_10017493; scaffold853 TRF Tandem_Repeat 188757 188799 68 + . . scaffold853 GLEAN promoter 200235 201234 0.597248 - . ID=CGI_10017493; scaffold853 TRF Tandem_Repeat 200270 200374 56 + . . scaffold853 GLEAN mRNA 204099 212863 1 - . ID=CGI_10017494; scaffold853 GLEAN promoter 205619 206618 0.253956 + . ID=CGI_10017495; scaffold853 GLEAN mRNA 206619 210945 0.253956 + . ID=CGI_10017495; scaffold853 WUBlastX DNA_Kolobok-Hyd 206865 207149 30 + . . scaffold853 WUBlastX DNA_Kolobok-Hyd 206913 207302 29 + . . scaffold853 WUBlastX DNA_Kolobok-Hyd 207816 207890 42 + . . scaffold853 WUBlastX DNA_Kolobok-Hyd 208049 208345 31 + . . scaffold853 GLEAN promoter 212189 213188 0.991473 + . ID=CGI_10017496; scaffold853 GLEAN promoter 212864 213863 1 - . ID=CGI_10017494; scaffold853 GLEAN mRNA 213189 227552 0.991473 + . ID=CGI_10017496; scaffold853 GLEAN mRNA 213339 226441 0.999647 - . ID=CGI_10017497; scaffold853 TRF Tandem_Repeat 217442 218236 967 + . . scaffold853 TRF Tandem_Repeat 219242 219371 57 + . . scaffold853 TRF Tandem_Repeat 224939 224970 64 + . . scaffold853 GLEAN promoter 226442 227441 0.999647 - . ID=CGI_10017497; scaffold853 GLEAN promoter 227240 228239 0.61441 + . ID=CGI_10017498; scaffold853 GLEAN mRNA 228240 239310 0.61441 + . ID=CGI_10017498; scaffold853 WUBlastX LINE_RTE-X 229300 229596 105 - . . scaffold853 TRF Tandem_Repeat 237645 237710 78 + . . scaffold853 TRF Tandem_Repeat 237645 237709 100 + . . scaffold853 TRF Tandem_Repeat 237645 237710 84 + . . scaffold853 GLEAN promoter 243862 244861 1 + . ID=CGI_10017500; scaffold853 GLEAN mRNA 244862 251158 1 + . ID=CGI_10017500; scaffold853 TRF Tandem_Repeat 245748 245796 98 + . . scaffold853 GLEAN mRNA 251653 255738 0.445165 - . ID=CGI_10017501; scaffold853 GLEAN promoter 255739 256738 0.445165 - . ID=CGI_10017501; scaffold853 WUBlastX LINE_RTE-BovB 279003 279197 56 - . . scaffold853 WUBlastX DNA_PiggyBac 281747 282448 310 - . . scaffold853 WUBlastX DNA_PiggyBac 282477 283292 357 - . . scaffold853 GLEAN mRNA 284112 288750 0.99961 - . ID=CGI_10017502; scaffold853 GLEAN promoter 288751 289750 0.99961 - . ID=CGI_10017502; scaffold853 GLEAN mRNA 290549 292658 0.999998 - . ID=CGI_10017503; scaffold853 TRF Tandem_Repeat 291439 291472 68 + . . scaffold853 GLEAN promoter 292659 293658 0.999998 - . ID=CGI_10017503; scaffold853 GLEAN mRNA 297449 310877 0.993907 - . ID=CGI_10017504; scaffold853 GLEAN promoter 310878 311877 0.993907 - . ID=CGI_10017504; scaffold853 TRF Tandem_Repeat 326953 326985 66 + . . scaffold853 GLEAN mRNA 331486 333500 0.999989 - . ID=CGI_10017505; scaffold853 GLEAN promoter 333501 334500 0.999989 - . ID=CGI_10017505; scaffold853 GLEAN mRNA 334854 363789 0.92582 - . ID=CGI_10017506; scaffold853 TRF Tandem_Repeat 345666 345763 144 + . . scaffold853 GLEAN promoter 350214 351213 1 + . ID=CGI_10017507; scaffold853 GLEAN mRNA 351214 358565 1 + . ID=CGI_10017507; scaffold853 GLEAN promoter 363788 364787 0.889923 + . ID=CGI_10017508; scaffold853 GLEAN promoter 363790 364789 0.92582 - . ID=CGI_10017506; scaffold853 GLEAN mRNA 364788 367837 0.889923 + . ID=CGI_10017508; scaffold853 GLEAN mRNA 368879 386304 0.651533 - . ID=CGI_10017509; scaffold853 TRF Tandem_Repeat 372169 372206 76 + . . scaffold853 TRF Tandem_Repeat 373423 373488 123 + . . scaffold853 TRF Tandem_Repeat 373985 374028 88 + . . scaffold853 TRF Tandem_Repeat 378518 378553 72 + . . scaffold853 TRF Tandem_Repeat 380409 380453 74 + . . scaffold853 GLEAN promoter 386305 387304 0.651533 - . ID=CGI_10017509; scaffold853 GLEAN mRNA 387024 391220 1 - . ID=CGI_10017510; scaffold853 GLEAN promoter 390532 391531 0.794067 + . ID=CGI_10017511; scaffold853 GLEAN promoter 391221 392220 1 - . ID=CGI_10017510; scaffold853 GLEAN mRNA 391532 401317 0.794067 + . ID=CGI_10017511; scaffold853 GLEAN promoter 405891 406890 0.999998 + . ID=CGI_10017512; scaffold853 TRF Tandem_Repeat 406179 406270 111 + . . scaffold853 TRF Tandem_Repeat 406197 406270 105 + . . scaffold853 GLEAN mRNA 406891 409066 0.999998 + . ID=CGI_10017512; scaffold853 GLEAN promoter 408318 409317 0.999998 + . ID=CGI_10017513; scaffold853 GLEAN mRNA 409318 410070 0.999998 + . ID=CGI_10017513; scaffold853 GLEAN promoter 410154 411153 0.70571 + . ID=CGI_10017514; scaffold853 GLEAN mRNA 411154 430281 0.70571 + . ID=CGI_10017514; scaffold853 GLEAN mRNA 415724 427572 0.999675 - . ID=CGI_10017515; scaffold853 TRF Tandem_Repeat 426063 426103 82 + . . scaffold853 GLEAN promoter 427573 428572 0.999675 - . ID=CGI_10017515; scaffold853 GLEAN mRNA 427674 436320 0.99996 - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 430815 431597 23 - . . scaffold853 WUBlastX LINE_L2 430974 431594 430 - . . scaffold853 WUBlastX LINE_L2 431402 432679 631 - . . scaffold853 WUBlastX LINE_L2 431669 432679 655 - . . scaffold853 WUBlastX LINE_CR1 432575 432712 21 - . . scaffold853 WUBlastX LINE_L2 433195 433275 21 - . . scaffold853 GLEAN promoter 436321 437320 0.99996 - . ID=CGI_10017516; scaffold853 WUBlastX LINE_L2 437101 438114 417 - . . scaffold853 WUBlastX LINE_L2 437134 438576 387 - . . scaffold853 TRF Tandem_Repeat 440763 440799 56 + . . scaffold853 WUBlastX LINE_L2 442398 442559 21 - . . scaffold853 WUBlastX LINE_RTE-X 442559 442864 21 - . . scaffold853 WUBlastX LINE_RTE-X 442721 442933 38 - . . scaffold853 WUBlastX LINE_CR1 442932 443093 32 - . . scaffold853 WUBlastX LINE_I 442978 444231 140 - . . scaffold853 WUBlastX LINE_RTE-X 443113 444129 227 - . . scaffold853 WUBlastX LINE_Proto2 444300 444896 42 - . . scaffold853 WUBlastX LINE_CR1 444591 444959 39 - . . scaffold853 WUBlastX LINE_CR1 444636 445019 26 - . . scaffold853 TRF Tandem_Repeat 446146 446179 50 + . . scaffold853 TRF Tandem_Repeat 446779 446876 142 + . . scaffold853 GLEAN mRNA 448693 455013 0.999949 - . ID=CGI_10017517; scaffold853 WUBlastX LTR_Gypsy 449121 449189 20 - . . scaffold853 WUBlastX LTR_Gypsy 449152 449310 24 - . . scaffold853 WUBlastX LTR_Gypsy 449462 449962 48 - . . scaffold853 WUBlastX LTR_Gypsy 449631 450548 198 - . . scaffold853 WUBlastX LTR_Gypsy 449961 450677 93 - . . scaffold853 WUBlastX LTR_Gypsy 450000 450521 220 - . . scaffold853 WUBlastX LTR_Gypsy 451931 452119 33 - . . scaffold853 WUBlastX LTR_Gypsy-Troyk 452054 452149 37 - . . scaffold853 WUBlastX LTR_Gypsy 452364 452669 98 - . . scaffold853 WUBlastX LTR_Gypsy 452415 453395 478 - . . scaffold853 WUBlastX LTR_Gypsy 453388 453915 114 - . . scaffold853 WUBlastX LTR_Gypsy 453388 453822 194 - . . scaffold853 WUBlastX LTR_Gypsy 453984 454421 47 - . . scaffold853 WUBlastX LTR_Gypsy 454472 454576 26 - . . scaffold853 GLEAN promoter 455014 456013 0.999949 - . ID=CGI_10017517; scaffold853 TRF Tandem_Repeat 456764 458647 670 + . . scaffold853 TRF Tandem_Repeat 456962 457651 432 + . . scaffold853 TRF Tandem_Repeat 456963 457651 454 + . . scaffold853 GLEAN promoter 460604 461603 0.999661 + . ID=CGI_10017518; scaffold853 GLEAN mRNA 461604 463562 0.999661 + . ID=CGI_10017518; scaffold853 GLEAN mRNA 464268 475102 0.615194 - . ID=CGI_10017519; scaffold853 TRF Tandem_Repeat 466190 466684 954 + . . scaffold853 TRF Tandem_Repeat 471541 471602 124 + . . scaffold853 WUBlastX LTR_Ngaro 475091 475372 48 - . . scaffold853 GLEAN promoter 475103 476102 0.615194 - . ID=CGI_10017519; scaffold853 TRF Tandem_Repeat 481534 481588 110 + . . scaffold853 TRF Tandem_Repeat 482433 482473 73 + . . scaffold853 TRF Tandem_Repeat 488465 488500 54 + . . scaffold854 WUBlastX LTR_Gypsy 2016 4082 1451 - . . scaffold854 WUBlastX LTR_Gypsy 4145 5119 503 - . . scaffold854 TRF Tandem_Repeat 8934 9047 88 + . . scaffold854 WUBlastX LTR_Gypsy 9465 10931 394 - . . scaffold854 WUBlastX LTR_Gypsy 9738 10943 564 - . . scaffold854 WUBlastX LTR_Gypsy 10945 12006 498 - . . scaffold854 WUBlastX LTR_Gypsy-Cigr 11179 11985 550 - . . scaffold854 WUBlastX LTR_Gypsy 11311 11985 620 - . . scaffold854 WUBlastX LTR_Gypsy 11314 12147 481 - . . scaffold854 WUBlastX LTR_Gypsy 11986 12864 308 - . . scaffold854 WUBlastX LTR_Gypsy-Cigr 11986 12534 385 - . . scaffold854 WUBlastX LTR_Gypsy-Cigr 11989 12732 382 - . . scaffold854 WUBlastX LTR_Gypsy 13946 14161 69 - . . scaffold854 WUBlastX LTR_Gypsy 14003 14161 75 - . . scaffold854 WUBlastX LTR_Gypsy 14036 14167 113 - . . scaffold854 WUBlastX LTR_Gypsy 14036 14200 75 - . . scaffold854 WUBlastX LTR_Gypsy 14036 14278 46 - . . scaffold854 WUBlastX LTR_DIRS 14768 15067 125 + . . scaffold854 WUBlastX LTR_DIRS 14768 15553 90 + . . scaffold854 WUBlastX LTR_DIRS 14947 15255 113 + . . scaffold854 WUBlastX LTR_DIRS 14953 15678 50 + . . scaffold854 WUBlastX LTR_DIRS 14953 15192 113 + . . scaffold854 GLEAN promoter 22204 23203 0.996819 + . ID=CGI_10022231; scaffold854 GLEAN mRNA 23204 24868 0.996819 + . ID=CGI_10022231; scaffold854 GLEAN mRNA 29983 34778 0.99989 - . ID=CGI_10022232; scaffold854 TRF Tandem_Repeat 33395 33433 78 + . . scaffold854 GLEAN promoter 34779 35778 0.99989 - . ID=CGI_10022232; scaffold854 GLEAN mRNA 35834 50513 0.415791 - . ID=CGI_10022233; scaffold854 TRF Tandem_Repeat 39948 40000 55 + . . scaffold854 TRF Tandem_Repeat 49175 49306 115 + . . scaffold854 GLEAN promoter 50514 51513 0.415791 - . ID=CGI_10022233; scaffold854 GLEAN promoter 51835 52834 1 + . ID=CGI_10022234; scaffold854 GLEAN mRNA 52835 56578 1 + . ID=CGI_10022234; scaffold854 TRF Tandem_Repeat 53903 53989 79 + . . scaffold854 TRF Tandem_Repeat 54067 54207 147 + . . scaffold854 GLEAN promoter 57918 58917 0.738397 + . ID=CGI_10022235; scaffold854 GLEAN mRNA 58918 67870 0.738397 + . ID=CGI_10022235; scaffold854 TRF Tandem_Repeat 60684 60787 120 + . . scaffold854 TRF Tandem_Repeat 60685 60983 139 + . . scaffold854 TRF Tandem_Repeat 60817 60988 120 + . . scaffold854 TRF Tandem_Repeat 61366 61430 62 + . . scaffold854 GLEAN promoter 67740 68739 1 + . ID=CGI_10022236; scaffold854 GLEAN mRNA 68740 80420 1 + . ID=CGI_10022236; scaffold854 GLEAN mRNA 80165 85221 0.742703 - . ID=CGI_10022237; scaffold854 GLEAN promoter 85222 86221 0.742703 - . ID=CGI_10022237; scaffold854 TRF Tandem_Repeat 92925 92974 75 + . . scaffold854 TRF Tandem_Repeat 92925 92962 58 + . . scaffold854 GLEAN mRNA 93765 97680 0.815047 - . ID=CGI_10022238; scaffold854 TRF Tandem_Repeat 93999 94046 87 + . . scaffold854 GLEAN promoter 97681 98680 0.815047 - . ID=CGI_10022238; scaffold854 WUBlastX LINE_RTE-X 102224 102880 145 - . . scaffold854 WUBlastX LINE_RTE-X 102871 102993 35 - . . scaffold854 TRF Tandem_Repeat 105204 105235 64 + . . scaffold854 TRF Tandem_Repeat 105883 105909 54 + . . scaffold854 GLEAN promoter 107522 108521 0.99948 + . ID=CGI_10022239; scaffold854 GLEAN mRNA 108522 130104 0.99948 + . ID=CGI_10022239; scaffold854 TRF Tandem_Repeat 115222 115275 94 + . . scaffold854 GLEAN promoter 138553 139552 0.996783 + . ID=CGI_10022240; scaffold854 GLEAN mRNA 139553 156523 0.996783 + . ID=CGI_10022240; scaffold854 TRF Tandem_Repeat 144054 144107 54 + . . scaffold854 TRF Tandem_Repeat 158495 158562 93 + . . scaffold854 WUBlastX LTR_Gypsy 165579 165743 63 + . . scaffold854 WUBlastX LINE_L1 167540 168184 48 + . . scaffold854 WUBlastX LINE_L1 167639 168232 88 + . . scaffold854 WUBlastX LINE_RTE-X 168473 168739 86 + . . scaffold854 WUBlastX LINE_RTE-X 168678 169145 61 + . . scaffold854 WUBlastX LINE_RTE-X 168774 169211 29 + . . scaffold854 TRF Tandem_Repeat 169229 169280 104 + . . scaffold854 WUBlastX LINE_RTE-X 169300 169695 21 + . . scaffold854 WUBlastX LINE_RTE-X 169799 169996 77 + . . scaffold854 WUBlastX LINE_RTE-X 169820 170041 47 + . . scaffold854 WUBlastX LINE_RTE-X 174490 174783 42 + . . scaffold854 TRF Tandem_Repeat 181350 181650 228 + . . scaffold854 TRF Tandem_Repeat 183828 183911 154 + . . scaffold854 WUBlastX LTR_Ngaro 184788 184916 53 - . . scaffold854 TRF Tandem_Repeat 188773 188876 100 + . . scaffold854 TRF Tandem_Repeat 191319 191345 54 + . . scaffold854 WUBlastX LINE_RTE-X 192950 193138 31 - . . scaffold854 WUBlastX LINE_RTE-X 193153 194538 943 - . . scaffold854 TRF Tandem_Repeat 194563 194656 89 + . . scaffold854 TRF Tandem_Repeat 194886 195045 160 + . . scaffold854 TRF Tandem_Repeat 195122 195213 105 + . . scaffold854 WUBlastX LINE_RTE-X 195236 197122 1031 - . . scaffold854 WUBlastX LINE_Jockey 196718 197233 36 - . . scaffold854 GLEAN mRNA 197153 198070 0.635503 - . ID=CGI_10022241; scaffold854 WUBlastX LINE_RTE-X 197222 197983 214 - . . scaffold854 GLEAN promoter 198071 199070 0.635503 - . ID=CGI_10022241; scaffold854 GLEAN mRNA 199789 233078 0.458883 - . ID=CGI_10022242; scaffold854 TRF Tandem_Repeat 200971 201125 202 + . . scaffold854 TRF Tandem_Repeat 217142 217195 90 + . . scaffold854 TRF Tandem_Repeat 222867 223008 100 + . . scaffold854 TRF Tandem_Repeat 230957 231251 326 + . . scaffold854 GLEAN promoter 233079 234078 0.458883 - . ID=CGI_10022242; scaffold854 TRF Tandem_Repeat 234864 235042 229 + . . scaffold854 GLEAN mRNA 238420 242141 0.749028 - . ID=CGI_10022243; scaffold854 GLEAN promoter 242142 243141 0.749028 - . ID=CGI_10022243; scaffold854 TRF Tandem_Repeat 247400 248749 1198 + . . scaffold854 TRF Tandem_Repeat 247423 247710 124 + . . scaffold854 TRF Tandem_Repeat 247428 248749 1038 + . . scaffold854 TRF Tandem_Repeat 247697 248749 1108 + . . scaffold854 GLEAN promoter 250375 251374 0.999676 + . ID=CGI_10022244; scaffold854 GLEAN mRNA 251375 255200 0.999676 + . ID=CGI_10022244; scaffold854 GLEAN mRNA 256879 279612 0.681082 - . ID=CGI_10022245; scaffold854 TRF Tandem_Repeat 267915 268606 1077 + . . scaffold854 TRF Tandem_Repeat 268616 268666 84 + . . scaffold854 GLEAN promoter 279613 280612 0.681082 - . ID=CGI_10022245; scaffold854 GLEAN mRNA 304881 308587 0.991426 - . ID=CGI_10022246; scaffold854 GLEAN promoter 308588 309587 0.991426 - . ID=CGI_10022246; scaffold854 GLEAN promoter 316684 317683 0.813824 + . ID=CGI_10022247; scaffold854 GLEAN mRNA 317684 326408 0.813824 + . ID=CGI_10022247; scaffold854 TRF Tandem_Repeat 317995 318048 92 + . . scaffold854 GLEAN promoter 327671 328670 1 + . ID=CGI_10022249; scaffold854 GLEAN mRNA 328198 328401 0.618241 - . ID=CGI_10022248; scaffold854 GLEAN promoter 328402 329401 0.618241 - . ID=CGI_10022248; scaffold854 GLEAN mRNA 328671 336132 1 + . ID=CGI_10022249; scaffold854 TRF Tandem_Repeat 333422 333471 66 + . . scaffold854 TRF Tandem_Repeat 333644 334556 1506 + . . scaffold854 TRF Tandem_Repeat 340354 340637 212 + . . scaffold854 GLEAN mRNA 343141 349610 1 - . ID=CGI_10022250; scaffold854 GLEAN promoter 349611 350610 1 - . ID=CGI_10022250; scaffold854 GLEAN promoter 351110 352109 0.574859 + . ID=CGI_10022251; scaffold854 GLEAN mRNA 352110 370934 0.574859 + . ID=CGI_10022251; scaffold854 TRF Tandem_Repeat 355022 355316 150 + . . scaffold854 TRF Tandem_Repeat 355271 355702 221 + . . scaffold854 TRF Tandem_Repeat 355288 355733 386 + . . scaffold854 TRF Tandem_Repeat 355289 355733 276 + . . scaffold854 TRF Tandem_Repeat 355424 355727 229 + . . scaffold854 TRF Tandem_Repeat 355515 355623 50 + . . scaffold854 TRF Tandem_Repeat 367355 367408 101 + . . scaffold854 TRF Tandem_Repeat 370348 370594 316 + . . scaffold854 WUBlastX LINE_L1-Tx1 375416 375580 28 + . . scaffold854 WUBlastX LINE_L1-Tx1 375446 375586 83 + . . scaffold854 WUBlastX LINE_L1-Tx1 375446 375616 32 + . . scaffold854 WUBlastX LINE_L1-Tx1 375625 375963 145 + . . scaffold854 WUBlastX LINE_L1 375628 376092 64 + . . scaffold854 WUBlastX LINE_L1-Tx1 375634 376809 23 + . . scaffold854 WUBlastX LINE_L1-Tx1 376402 376809 26 + . . scaffold854 TRF Tandem_Repeat 378495 378806 119 + . . scaffold854 TRF Tandem_Repeat 378580 378808 232 + . . scaffold854 TRF Tandem_Repeat 382851 382909 118 + . . scaffold854 GLEAN promoter 396662 397661 0.849104 + . ID=CGI_10022252; scaffold854 GLEAN mRNA 397662 453116 0.849104 + . ID=CGI_10022252; scaffold854 TRF Tandem_Repeat 400046 400083 76 + . . scaffold854 TRF Tandem_Repeat 411991 412015 50 + . . scaffold854 WUBlastX LINE_L1-Tx1 415651 416214 24 - . . scaffold854 TRF Tandem_Repeat 416311 416364 67 + . . scaffold854 TRF Tandem_Repeat 416316 416361 67 + . . scaffold854 TRF Tandem_Repeat 416534 417611 1820 + . . scaffold854 TRF Tandem_Repeat 428371 428598 240 + . . scaffold854 TRF Tandem_Repeat 428372 428610 235 + . . scaffold854 TRF Tandem_Repeat 429195 429454 304 + . . scaffold854 TRF Tandem_Repeat 429195 429454 322 + . . scaffold854 TRF Tandem_Repeat 429203 429456 377 + . . scaffold854 TRF Tandem_Repeat 430956 430992 74 + . . scaffold854 WUBlastX LINE_RTE-X 450297 450836 92 - . . scaffold854 WUBlastX LINE_RTE-X 450423 450836 119 - . . scaffold854 GLEAN mRNA 454980 488187 0.999999 - . ID=CGI_10022253; scaffold854 TRF Tandem_Repeat 459632 459669 76 + . . scaffold854 TRF Tandem_Repeat 476441 476490 100 + . . scaffold854 GLEAN promoter 488188 489187 0.999999 - . ID=CGI_10022253; scaffold854 GLEAN mRNA 488280 491637 0.999674 - . ID=CGI_10022254; scaffold854 GLEAN promoter 491638 492637 0.999674 - . ID=CGI_10022254; scaffold854 GLEAN promoter 493954 494953 0.585125 + . ID=CGI_10022255; scaffold854 GLEAN mRNA 494954 503389 0.585125 + . ID=CGI_10022255; scaffold854 TRF Tandem_Repeat 498755 498781 54 + . . scaffold854 GLEAN mRNA 505041 513508 0.999351 - . ID=CGI_10022256; scaffold854 GLEAN promoter 509403 510402 1 + . ID=CGI_10022257; scaffold854 GLEAN mRNA 510403 511969 1 + . ID=CGI_10022257; scaffold854 TRF Tandem_Repeat 510534 510586 106 + . . scaffold854 GLEAN promoter 513509 514508 0.999351 - . ID=CGI_10022256; scaffold854 GLEAN mRNA 513651 517723 0.999995 - . ID=CGI_10022258; scaffold854 GLEAN promoter 517724 518723 0.999995 - . ID=CGI_10022258; scaffold854 TRF Tandem_Repeat 518812 520047 1577 + . . scaffold854 TRF Tandem_Repeat 521449 521514 107 + . . scaffold854 TRF Tandem_Repeat 521452 521513 81 + . . scaffold854 TRF Tandem_Repeat 536868 537908 1115 + . . scaffold854 TRF Tandem_Repeat 540297 540357 68 + . . scaffold854 TRF Tandem_Repeat 556765 556822 116 + . . scaffold854 GLEAN promoter 556835 557834 1 + . ID=CGI_10022259; scaffold854 GLEAN mRNA 557835 560380 1 + . ID=CGI_10022259; scaffold854 GLEAN mRNA 564526 587829 0.993533 - . ID=CGI_10022260; scaffold854 TRF Tandem_Repeat 570701 570801 130 + . . scaffold854 TRF Tandem_Repeat 581488 581561 62 + . . scaffold854 TRF Tandem_Repeat 581488 581573 54 + . . scaffold854 TRF Tandem_Repeat 581497 581574 81 + . . scaffold854 TRF Tandem_Repeat 585629 585672 79 + . . scaffold854 GLEAN promoter 587830 588829 0.993533 - . ID=CGI_10022260; scaffold854 TRF Tandem_Repeat 588681 588715 70 + . . scaffold854 GLEAN promoter 592945 593944 0.999735 + . ID=CGI_10022261; scaffold854 GLEAN mRNA 593945 607422 0.999735 + . ID=CGI_10022261; scaffold854 TRF Tandem_Repeat 595470 595577 153 + . . scaffold854 TRF Tandem_Repeat 597132 597180 98 + . . scaffold854 WUBlastX LINE_L1-Tx1 597182 597814 129 + . . scaffold854 WUBlastX LINE_L1 597843 598214 20 + . . scaffold854 WUBlastX LINE_L1-Tx1 597843 598088 81 + . . scaffold854 WUBlastX DNA_Harbinger 609734 609865 65 - . . scaffold854 WUBlastX LINE_RTE-X 613343 613714 33 - . . scaffold854 WUBlastX LINE_RTE-X 613403 613708 33 - . . scaffold854 WUBlastX LINE_RTE-X 613469 613705 55 - . . scaffold854 GLEAN promoter 614007 615006 0.932456 + . ID=CGI_10022262; scaffold854 WUBlastX LINE_CR1 614170 614766 245 + . . scaffold854 WUBlastX LINE_L1-Tx1 614170 614877 201 + . . scaffold854 WUBlastX LINE_L1-Tx1 614278 615261 46 + . . scaffold854 GLEAN mRNA 615007 630217 0.932456 + . ID=CGI_10022262; scaffold854 WUBlastX LINE_L1-Tx1 615343 615735 144 + . . scaffold854 TRF Tandem_Repeat 620128 620912 1036 + . . scaffold854 WUBlastX LTR_Gypsy 635005 635295 44 - . . scaffold854 WUBlastX LTR_Gypsy 635005 635364 43 - . . scaffold854 WUBlastX DNA_IS4EU 638115 638315 34 - . . scaffold854 WUBlastX DNA_hAT-Tip100 640300 640797 117 + . . scaffold854 WUBlastX DNA_hAT-Tip100 640378 640797 137 + . . scaffold854 WUBlastX DNA_hAT-Tip100 640802 640936 65 + . . scaffold854 WUBlastX DNA_hAT-Tip100 640960 641073 52 + . . scaffold854 WUBlastX DNA_hAT-Tip100 641222 641380 44 + . . scaffold854 WUBlastX DNA_hAT-Tip100 641273 641380 66 + . . scaffold854 WUBlastX DNA_hAT-Tip100 641380 641505 78 + . . scaffold854 WUBlastX DNA_hAT-Tip100 641380 641535 45 + . . scaffold854 GLEAN mRNA 650115 651239 0.999996 - . ID=CGI_10022263; scaffold854 GLEAN promoter 651240 652239 0.999996 - . ID=CGI_10022263; scaffold854 TRF Tandem_Repeat 660738 660791 62 + . . scaffold854 TRF Tandem_Repeat 660792 660837 83 + . . scaffold854 TRF Tandem_Repeat 670307 670395 97 + . . scaffold854 TRF Tandem_Repeat 670479 670702 198 + . . scaffold854 TRF Tandem_Repeat 670702 670868 122 + . . scaffold854 TRF Tandem_Repeat 670953 671039 113 + . . scaffold854 TRF Tandem_Repeat 677230 677263 52 + . . scaffold854 TRF Tandem_Repeat 690234 690269 72 + . . scaffold854 TRF Tandem_Repeat 694371 694449 149 + . . scaffold854 WUBlastX DNA_TcMar-Tc1 695018 695236 86 - . . scaffold854 WUBlastX DNA_TcMar-Tc1 695042 695281 39 - . . scaffold854 WUBlastX DNA_TcMar-Tc1 695275 695754 145 - . . scaffold854 WUBlastX DNA_TcMar-Tc1 695278 695883 39 - . . scaffold854 WUBlastX DNA_TcMar-Tc1 696368 696532 21 - . . scaffold854 WUBlastX DNA_TcMar-Tc1 696398 696631 41 - . . scaffold854 GLEAN promoter 697978 698977 0.21294 + . ID=CGI_10022264; scaffold854 GLEAN mRNA 698978 729843 0.21294 + . ID=CGI_10022264; scaffold854 WUBlastX LTR_Pao 703027 703824 44 + . . scaffold854 WUBlastX LTR_Pao 703378 704277 229 + . . scaffold854 WUBlastX LTR_Pao 703861 704424 173 + . . scaffold854 TRF Tandem_Repeat 708495 708528 59 + . . scaffold854 TRF Tandem_Repeat 721675 721728 108 + . . scaffold854 TRF Tandem_Repeat 728817 728934 155 + . . scaffold854 TRF Tandem_Repeat 728817 728958 90 + . . scaffold854 TRF Tandem_Repeat 738452 738531 160 + . . scaffold855 GLEAN promoter 1 753 0.999983 + . ID=CGI_10001160; scaffold855 GLEAN mRNA 754 11189 0.999983 + . ID=CGI_10001160; scaffold855 WUBlastX DNA_Maverick 2320 3141 74 + . . scaffold855 WUBlastX DNA_Maverick 2554 3108 103 + . . scaffold855 WUBlastX DNA_Maverick 3229 3360 50 + . . scaffold855 TRF Tandem_Repeat 7598 7663 123 + . . scaffold855 TRF Tandem_Repeat 8890 8928 69 + . . scaffold855 GLEAN mRNA 12491 13261 0.978042 - . ID=CGI_10001161; scaffold855 WUBlastX LTR_Pao 13200 13688 44 - . . scaffold855 GLEAN promoter 13262 14261 0.978042 - . ID=CGI_10001161; scaffold855 WUBlastX LTR_Pao 13326 13670 93 - . . scaffold855 TRF Tandem_Repeat 15081 15212 160 + . . scaffold856 WUBlastX LINE_CR1-L2 686 868 36 + . . scaffold856 WUBlastX LINE_CR1-L2 719 868 60 + . . scaffold857 GLEAN promoter 2719 3718 1 + . ID=CGI_10002412; scaffold857 GLEAN mRNA 3719 6410 1 + . ID=CGI_10002412; scaffold857 GLEAN promoter 8995 9994 0.999769 + . ID=CGI_10002413; scaffold857 GLEAN mRNA 9995 21199 0.999769 + . ID=CGI_10002413; scaffold857 GLEAN mRNA 17815 33794 0.530951 - . ID=CGI_10002414; scaffold857 GLEAN promoter 23454 24453 1 + . ID=CGI_10002415; scaffold857 GLEAN mRNA 24454 28905 1 + . ID=CGI_10002415; scaffold857 GLEAN promoter 33795 34794 0.530951 - . ID=CGI_10002414; scaffold857 GLEAN promoter 39690 40689 0.999998 + . ID=CGI_10002416; scaffold857 GLEAN mRNA 40690 42342 0.999998 + . ID=CGI_10002416; scaffold857 GLEAN promoter 41452 42451 0.999998 + . ID=CGI_10002417; scaffold857 GLEAN mRNA 42452 42850 0.999998 + . ID=CGI_10002417; scaffold857 GLEAN promoter 44339 45338 0.999998 + . ID=CGI_10002418; scaffold857 GLEAN mRNA 45339 45737 0.999998 + . ID=CGI_10002418; scaffold858 WUBlastX LINE_RTE-X 6643 7284 65 - . . scaffold858 WUBlastX LINE_RTE-X 6751 7284 79 - . . scaffold858 WUBlastX LINE_RTE-X 6877 7944 89 - . . scaffold858 WUBlastX LINE_RTE-X 7210 7932 101 - . . scaffold858 WUBlastX LINE_RTE-X 7605 8267 211 - . . scaffold858 WUBlastX LINE_RTE-X 8260 8631 125 - . . scaffold858 WUBlastX LINE_RTE-X 8263 8721 116 - . . scaffold858 WUBlastX LINE_L1-Tx1 8263 8808 56 - . . scaffold858 WUBlastX LINE_Proto2 9033 9194 24 - . . scaffold858 GLEAN mRNA 10847 22761 0.93008 - . ID=CGI_10004935; scaffold858 WUBlastX LINE_CR1-L2 15114 15359 50 - . . scaffold858 WUBlastX LINE_L2 15203 16306 268 - . . scaffold858 WUBlastX LINE_L2 15353 16606 167 - . . scaffold858 WUBlastX LINE_L2 15398 16354 569 - . . scaffold858 WUBlastX LINE_L2 16512 16625 35 - . . scaffold858 WUBlastX LINE_Jockey 16894 16944 20 - . . scaffold858 WUBlastX LINE_L2 17344 17397 24 - . . scaffold858 GLEAN promoter 22762 23761 0.93008 - . ID=CGI_10004935; scaffold858 TRF Tandem_Repeat 24277 24311 70 + . . scaffold858 TRF Tandem_Repeat 56331 56388 59 + . . scaffold858 TRF Tandem_Repeat 56332 56390 77 + . . scaffold858 TRF Tandem_Repeat 56340 56390 86 + . . scaffold858 TRF Tandem_Repeat 67577 67688 160 + . . scaffold858 TRF Tandem_Repeat 76088 76121 61 + . . scaffold858 TRF Tandem_Repeat 78436 78489 108 + . . scaffold858 TRF Tandem_Repeat 80998 81235 206 + . . scaffold858 GLEAN promoter 81698 82697 0.721328 + . ID=CGI_10004936; scaffold858 GLEAN mRNA 82698 87450 0.721328 + . ID=CGI_10004936; scaffold858 GLEAN mRNA 89058 94554 0.680743 - . ID=CGI_10004937; scaffold858 TRF Tandem_Repeat 94009 94038 60 + . . scaffold858 GLEAN promoter 94555 95554 0.680743 - . ID=CGI_10004937; scaffold858 TRF Tandem_Repeat 95120 95169 100 + . . scaffold858 GLEAN promoter 97382 98381 0.937796 + . ID=CGI_10004938; scaffold858 GLEAN mRNA 98382 99831 0.937796 + . ID=CGI_10004938; scaffold858 GLEAN mRNA 101182 112865 0.681235 - . ID=CGI_10004939; scaffold858 GLEAN promoter 112866 113865 0.681235 - . ID=CGI_10004939; scaffold858 TRF Tandem_Repeat 114341 114393 106 + . . scaffold859 GLEAN mRNA 20063 31535 0.375967 - . ID=CGI_10003161; scaffold859 GLEAN promoter 31536 32535 0.375967 - . ID=CGI_10003161; scaffold859 GLEAN promoter 50735 51734 0.999933 + . ID=CGI_10003162; scaffold859 GLEAN mRNA 51735 61426 0.999933 + . ID=CGI_10003162; scaffold86 TRF Tandem_Repeat 1579 1616 76 + . . scaffold86 GLEAN mRNA 3696 5183 0.487593 - . ID=CGI_10028131; scaffold86 GLEAN promoter 5184 6183 0.487593 - . ID=CGI_10028131; scaffold86 TRF Tandem_Repeat 9715 10496 1193 + . . scaffold86 TRF Tandem_Repeat 13618 14315 540 + . . scaffold86 TRF Tandem_Repeat 28065 28135 52 + . . scaffold86 WUBlastX LINE_RTE-X 31107 31439 74 + . . scaffold86 WUBlastX LINE_RTE-X 31436 32494 232 + . . scaffold86 WUBlastX LINE_L2 32735 32800 24 + . . scaffold86 WUBlastX LINE_RTE-X 33166 33246 31 + . . scaffold86 WUBlastX LINE_RTE-X 33234 33656 247 + . . scaffold86 WUBlastX LINE_RTE-X 33692 34321 228 + . . scaffold86 WUBlastX LINE_RTE-X 33692 34477 211 + . . scaffold86 WUBlastX LINE_RTE-X 34459 34662 63 + . . scaffold86 WUBlastX LINE_RTE-X 34674 34922 41 + . . scaffold86 WUBlastX LTR_Gypsy 38706 39074 135 + . . scaffold86 TRF Tandem_Repeat 42546 42571 52 + . . scaffold86 GLEAN promoter 42587 43586 0.943261 + . ID=CGI_10028132; scaffold86 GLEAN mRNA 43587 47639 0.943261 + . ID=CGI_10028132; scaffold86 WUBlastX LTR_Gypsy 44133 44873 88 - . . scaffold86 GLEAN mRNA 51591 66776 0.811579 - . ID=CGI_10028133; scaffold86 TRF Tandem_Repeat 56335 56530 183 + . . scaffold86 TRF Tandem_Repeat 61245 61293 73 + . . scaffold86 TRF Tandem_Repeat 61247 61292 60 + . . scaffold86 GLEAN promoter 66777 67776 0.811579 - . ID=CGI_10028133; scaffold86 TRF Tandem_Repeat 73595 73632 76 + . . scaffold86 TRF Tandem_Repeat 75002 75281 109 + . . scaffold86 TRF Tandem_Repeat 76555 76622 127 + . . scaffold86 WUBlastX LINE_L2 77151 77390 30 + . . scaffold86 WUBlastX LTR_Gypsy 81668 81733 37 + . . scaffold86 WUBlastX LTR_Lenti 81683 81742 40 + . . scaffold86 WUBlastX LTR_ERVK 82360 82536 38 + . . scaffold86 WUBlastX LTR_Copia 82402 82605 32 + . . scaffold86 WUBlastX LTR_Copia 82558 82644 28 + . . scaffold86 WUBlastX LTR_Copia 82974 83135 30 + . . scaffold86 GLEAN mRNA 89632 104350 0.657894 - . ID=CGI_10028134; scaffold86 TRF Tandem_Repeat 93941 94106 226 + . . scaffold86 TRF Tandem_Repeat 93942 94106 204 + . . scaffold86 TRF Tandem_Repeat 94229 94496 430 + . . scaffold86 GLEAN promoter 104351 105350 0.657894 - . ID=CGI_10028134; scaffold86 GLEAN mRNA 112573 112842 0.951388 - . ID=CGI_10028135; scaffold86 TRF Tandem_Repeat 112606 112642 74 + . . scaffold86 GLEAN promoter 112843 113842 0.951388 - . ID=CGI_10028135; scaffold86 TRF Tandem_Repeat 116704 116766 60 + . . scaffold86 GLEAN mRNA 116707 120213 1 - . ID=CGI_10028136; scaffold86 TRF Tandem_Repeat 116710 116766 57 + . . scaffold86 GLEAN promoter 120214 121213 1 - . ID=CGI_10028136; scaffold86 WUBlastX LINE_RTE-X 120934 121296 208 - . . scaffold86 WUBlastX LINE_RTE-X 121277 121705 269 - . . scaffold86 TRF Tandem_Repeat 122568 122676 59 + . . scaffold86 GLEAN mRNA 130487 132166 0.993906 - . ID=CGI_10028137; scaffold86 GLEAN promoter 132167 133166 0.993906 - . ID=CGI_10028137; scaffold86 GLEAN mRNA 137621 138964 0.806663 - . ID=CGI_10028138; scaffold86 GLEAN promoter 138965 139964 0.806663 - . ID=CGI_10028138; scaffold86 TRF Tandem_Repeat 140791 141189 452 + . . scaffold86 GLEAN mRNA 141744 153852 0.999675 - . ID=CGI_10028139; scaffold86 WUBlastX DNA_Kolobok 149346 149534 51 + . . scaffold86 WUBlastX DNA_Kolobok 149857 150057 69 + . . scaffold86 WUBlastX DNA_Kolobok 149896 150054 77 + . . scaffold86 WUBlastX DNA_Kolobok 150576 150815 86 - . . scaffold86 WUBlastX DNA_Kolobok 151157 151348 47 - . . scaffold86 WUBlastX DNA_Kolobok 151163 151312 56 - . . scaffold86 WUBlastX DNA_Kolobok 151506 151718 68 - . . scaffold86 WUBlastX DNA_Kolobok 151789 151899 29 - . . scaffold86 WUBlastX DNA_Kolobok 152021 152110 37 - . . scaffold86 WUBlastX DNA_Kolobok 152250 152492 118 - . . scaffold86 WUBlastX DNA_Kolobok 152706 153047 137 - . . scaffold86 WUBlastX DNA_Kolobok 152739 153188 38 - . . scaffold86 GLEAN promoter 153853 154852 0.999675 - . ID=CGI_10028139; scaffold86 GLEAN promoter 156089 157088 0.999926 + . ID=CGI_10028140; scaffold86 GLEAN mRNA 157089 169237 0.999926 + . ID=CGI_10028140; scaffold86 TRF Tandem_Repeat 158192 158230 71 + . . scaffold86 TRF Tandem_Repeat 159785 159973 193 + . . scaffold86 TRF Tandem_Repeat 167235 167335 64 + . . scaffold86 TRF Tandem_Repeat 167408 167831 200 + . . scaffold86 TRF Tandem_Repeat 167412 167587 157 + . . scaffold86 TRF Tandem_Repeat 168122 168448 370 + . . scaffold86 TRF Tandem_Repeat 168122 168448 308 + . . scaffold86 GLEAN mRNA 169842 192750 0.441413 - . ID=CGI_10028141; scaffold86 TRF Tandem_Repeat 189297 189686 512 + . . scaffold86 TRF Tandem_Repeat 190112 190431 385 + . . scaffold86 GLEAN promoter 192751 193750 0.441413 - . ID=CGI_10028141; scaffold86 GLEAN promoter 199665 200664 0.897284 + . ID=CGI_10028142; scaffold86 GLEAN mRNA 200665 223969 0.897284 + . ID=CGI_10028142; scaffold86 WUBlastX LTR_Pao 200791 201822 23 + . . scaffold86 WUBlastX LTR_Pao 200986 205353 2885 + . . scaffold86 WUBlastX LTR_Pao 205361 205621 257 + . . scaffold86 WUBlastX LTR_Pao 205367 205690 102 + . . scaffold86 WUBlastX LINE_L1-Tx1 216521 217057 151 + . . scaffold86 WUBlastX LINE_L1-Tx1 217068 217220 92 + . . scaffold86 WUBlastX LINE_L1 217092 217565 24 + . . scaffold86 WUBlastX LINE_L1-Tx1 217095 217250 76 + . . scaffold86 WUBlastX LINE_L1 217098 217394 35 + . . scaffold86 WUBlastX LINE_L1-Tx1 217592 217765 59 + . . scaffold86 WUBlastX LINE_L1 217661 217768 75 + . . scaffold86 WUBlastX LINE_L1-Tx1 217682 217909 31 + . . scaffold86 WUBlastX LINE_L1-Tx1 217685 217849 56 + . . scaffold86 WUBlastX LINE_L1-Tx1 217917 218036 41 + . . scaffold86 WUBlastX LINE_L1-Tx1 217920 218075 35 + . . scaffold86 WUBlastX LINE_L1-Tx1 218060 218227 30 + . . scaffold86 WUBlastX LINE_L1-Tx1 218096 218257 29 + . . scaffold86 TRF Tandem_Repeat 218477 218510 68 + . . scaffold86 WUBlastX DNA_IS4EU 224313 224687 43 + . . scaffold86 WUBlastX DNA_IS4EU 225109 225396 42 + . . scaffold86 WUBlastX DNA_IS4EU 225524 226045 174 + . . scaffold86 GLEAN mRNA 226150 228665 0.977065 - . ID=CGI_10028143; scaffold86 WUBlastX DNA_IS4EU 226174 226395 139 - . . scaffold86 WUBlastX DNA_IS4EU 226613 227284 397 - . . scaffold86 WUBlastX DNA_Kolobok-IS4 227497 227724 27 - . . scaffold86 WUBlastX DNA_IS4EU 227551 227685 45 - . . scaffold86 WUBlastX DNA_IS4EU 228354 228665 51 - . . scaffold86 GLEAN promoter 228666 229665 0.977065 - . ID=CGI_10028143; scaffold86 TRF Tandem_Repeat 233359 233446 155 + . . scaffold86 GLEAN mRNA 234944 244974 0.760974 - . ID=CGI_10028144; scaffold86 TRF Tandem_Repeat 236663 237621 1386 + . . scaffold86 TRF Tandem_Repeat 237652 237690 51 + . . scaffold86 WUBlastX LINE_Penelope 244297 244599 149 - . . scaffold86 WUBlastX LINE_Penelope 244351 244728 118 - . . scaffold86 GLEAN promoter 244975 245974 0.760974 - . ID=CGI_10028144; scaffold86 TRF Tandem_Repeat 245487 245531 90 + . . scaffold86 TRF Tandem_Repeat 248270 248300 53 + . . scaffold86 TRF Tandem_Repeat 248449 248496 82 + . . scaffold86 TRF Tandem_Repeat 260275 260345 81 + . . scaffold86 TRF Tandem_Repeat 260276 260345 90 + . . scaffold86 TRF Tandem_Repeat 262305 262413 110 + . . scaffold86 TRF Tandem_Repeat 262310 262413 145 + . . scaffold86 TRF Tandem_Repeat 264351 265402 1272 + . . scaffold86 GLEAN mRNA 268384 290961 0.844274 - . ID=CGI_10028145; scaffold86 TRF Tandem_Repeat 281086 282058 1455 + . . scaffold86 GLEAN promoter 290962 291961 0.844274 - . ID=CGI_10028145; scaffold86 GLEAN promoter 291637 292636 0.99982 + . ID=CGI_10028146; scaffold86 GLEAN mRNA 292637 294561 0.99982 + . ID=CGI_10028146; scaffold86 WUBlastX LTR_Gypsy 308308 308673 40 - . . scaffold86 WUBlastX LTR_Gypsy 308458 308673 79 - . . scaffold86 WUBlastX LTR_Gypsy 308559 309371 286 - . . scaffold86 WUBlastX LTR_Gypsy 308652 309188 348 - . . scaffold86 WUBlastX LTR_Gypsy 309373 310059 399 - . . scaffold86 WUBlastX LTR_Gypsy 310059 310301 217 - . . scaffold86 WUBlastX LTR_Gypsy 310280 310675 314 - . . scaffold86 WUBlastX LTR_Gypsy 310642 311598 614 - . . scaffold86 WUBlastX LTR_Gypsy 311098 311718 126 - . . scaffold86 WUBlastX LTR_Gypsy 311717 311776 34 - . . scaffold86 WUBlastX LTR_Gypsy 311811 311915 39 - . . scaffold86 WUBlastX LTR_Gypsy 311832 311915 41 - . . scaffold86 GLEAN mRNA 315229 330500 0.661006 - . ID=CGI_10028147; scaffold86 TRF Tandem_Repeat 319833 319862 51 + . . scaffold86 TRF Tandem_Repeat 321089 321131 50 + . . scaffold86 TRF Tandem_Repeat 321228 321305 50 + . . scaffold86 TRF Tandem_Repeat 327861 327913 54 + . . scaffold86 GLEAN promoter 330501 331500 0.661006 - . ID=CGI_10028147; scaffold86 TRF Tandem_Repeat 332624 332707 161 + . . scaffold86 GLEAN mRNA 337669 354842 1 - . ID=CGI_10028148; scaffold86 TRF Tandem_Repeat 339021 339047 54 + . . scaffold86 TRF Tandem_Repeat 341932 342406 505 + . . scaffold86 TRF Tandem_Repeat 345560 345595 72 + . . scaffold86 TRF Tandem_Repeat 348355 348604 401 + . . scaffold86 GLEAN promoter 354843 355842 1 - . ID=CGI_10028148; scaffold86 TRF Tandem_Repeat 358111 358148 76 + . . scaffold86 TRF Tandem_Repeat 358281 358305 50 + . . scaffold86 GLEAN promoter 361947 362946 0.490617 + . ID=CGI_10028149; scaffold86 TRF Tandem_Repeat 361977 362003 54 + . . scaffold86 GLEAN mRNA 362947 369507 0.490617 + . ID=CGI_10028149; scaffold86 GLEAN promoter 373644 374643 1 + . ID=CGI_10028150; scaffold86 GLEAN mRNA 374644 385307 1 + . ID=CGI_10028150; scaffold86 TRF Tandem_Repeat 383313 383346 68 + . . scaffold86 GLEAN promoter 393664 394663 0.996819 + . ID=CGI_10028151; scaffold86 GLEAN mRNA 394664 395612 0.996819 + . ID=CGI_10028151; scaffold86 GLEAN promoter 397522 398521 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 398165 398896 95 + . . scaffold86 GLEAN mRNA 398522 403007 0.217037 + . ID=CGI_10028152; scaffold86 WUBlastX DNA_Academ 398939 399580 226 + . . scaffold86 WUBlastX DNA_Academ 399545 399964 110 + . . scaffold86 WUBlastX DNA_Academ 399734 399979 115 + . . scaffold86 WUBlastX DNA_Academ 399876 400295 182 + . . scaffold86 TRF Tandem_Repeat 403551 403923 534 + . . scaffold86 WUBlastX LINE_RTE-X 411064 411462 58 + . . scaffold86 WUBlastX LINE_RTE-X 411145 411480 58 + . . scaffold86 WUBlastX LINE_RTE-X 411507 411740 75 + . . scaffold86 WUBlastX LINE_RTE-X 411510 411860 57 + . . scaffold86 GLEAN mRNA 415478 416665 0.573274 - . ID=CGI_10028153; scaffold86 GLEAN promoter 416666 417665 0.573274 - . ID=CGI_10028153; scaffold86 TRF Tandem_Repeat 417001 417108 189 + . . scaffold86 TRF Tandem_Repeat 419110 419142 50 + . . scaffold86 WUBlastX DNA_Maverick 435666 436346 73 + . . scaffold86 WUBlastX DNA_Maverick 435834 436334 81 + . . scaffold86 TRF Tandem_Repeat 443733 444463 745 + . . scaffold86 WUBlastX DNA_Academ 455709 456170 214 - . . scaffold86 WUBlastX DNA_Academ 456205 457683 850 - . . scaffold86 WUBlastX DNA_Academ 457724 458218 78 - . . scaffold86 WUBlastX DNA_Academ 457856 458218 94 - . . scaffold86 WUBlastX DNA_Academ 457955 458260 118 - . . scaffold86 WUBlastX DNA_Academ 458623 458790 34 - . . scaffold86 WUBlastX DNA_Academ 458650 458925 96 - . . scaffold86 WUBlastX DNA_Academ 458970 459356 258 - . . scaffold86 WUBlastX DNA_Academ 459012 459500 114 - . . scaffold86 WUBlastX DNA_Academ 459497 459757 62 - . . scaffold86 WUBlastX DNA_Academ 459787 460029 92 - . . scaffold86 TRF Tandem_Repeat 467178 467213 54 + . . scaffold86 TRF Tandem_Repeat 467182 467212 53 + . . scaffold86 WUBlastX LINE_Penelope 468687 469403 134 - . . scaffold86 WUBlastX LINE_Penelope 469325 469858 156 - . . scaffold86 WUBlastX LINE_Penelope 469412 469864 217 - . . scaffold86 WUBlastX LINE_Penelope 469870 470433 272 - . . scaffold86 WUBlastX LINE_Penelope 470412 470969 111 - . . scaffold86 WUBlastX LINE_Penelope 470472 470888 178 - . . scaffold86 WUBlastX LINE_Penelope 470805 471041 58 - . . scaffold86 WUBlastX LINE_Penelope 472002 472355 39 - . . scaffold86 WUBlastX LINE_Penelope 472131 472355 86 - . . scaffold86 WUBlastX LINE_Penelope 472774 473229 268 + . . scaffold86 WUBlastX LINE_Penelope 473164 473262 33 + . . scaffold86 WUBlastX LINE_Penelope 473205 473615 20 + . . scaffold86 WUBlastX LINE_Penelope 473334 474020 125 + . . scaffold86 TRF Tandem_Repeat 475903 475971 93 + . . scaffold86 TRF Tandem_Repeat 480539 480660 228 + . . scaffold86 GLEAN mRNA 495548 498646 0.999991 - . ID=CGI_10028154; scaffold86 GLEAN promoter 498647 499646 0.999991 - . ID=CGI_10028154; scaffold86 GLEAN mRNA 500840 504491 1 - . ID=CGI_10028155; scaffold86 GLEAN promoter 504492 505491 1 - . ID=CGI_10028155; scaffold86 TRF Tandem_Repeat 509795 509842 51 + . . scaffold86 TRF Tandem_Repeat 509798 509842 72 + . . scaffold86 TRF Tandem_Repeat 519723 519770 51 + . . scaffold86 TRF Tandem_Repeat 519726 519770 72 + . . scaffold86 GLEAN mRNA 522341 523049 0.557561 - . ID=CGI_10028156; scaffold86 GLEAN promoter 523050 524049 0.557561 - . ID=CGI_10028156; scaffold86 WUBlastX DNA_Chapaev 523495 523737 44 + . . scaffold86 WUBlastX DNA_Chapaev-Cha 523534 524256 42 + . . scaffold86 WUBlastX DNA_Sola 529020 529241 88 + . . scaffold86 TRF Tandem_Repeat 529828 529863 63 + . . scaffold86 TRF Tandem_Repeat 541566 541595 60 + . . scaffold86 TRF Tandem_Repeat 543025 543113 51 + . . scaffold86 WUBlastX LINE_RTE-X 544179 544565 75 - . . scaffold86 WUBlastX LINE_RTE-X 544266 544742 36 - . . scaffold86 WUBlastX LINE_RTE-X 544320 544637 54 - . . scaffold86 GLEAN mRNA 570615 572894 0.999366 - . ID=CGI_10028159; scaffold86 GLEAN promoter 572895 573894 0.999366 - . ID=CGI_10028159; scaffold86 WUBlastX LINE_CR1 574582 574938 92 - . . scaffold86 WUBlastX LINE_CR1 574663 574992 100 - . . scaffold86 WUBlastX LINE_CR1 574690 574938 143 - . . scaffold86 WUBlastX LINE_CR1 574976 575272 146 - . . scaffold86 WUBlastX LINE_CR1 575283 575495 40 - . . scaffold86 WUBlastX LINE_CR1 575385 575597 28 - . . scaffold86 GLEAN promoter 576054 577053 0.999999 + . ID=CGI_10028160; scaffold86 WUBlastX DNA_Sola 577000 577470 29 + . . scaffold86 GLEAN mRNA 577054 579340 0.999999 + . ID=CGI_10028160; scaffold86 WUBlastX DNA_Sola 578568 578930 74 + . . scaffold86 WUBlastX LINE_CR1 582177 582389 26 - . . scaffold86 WUBlastX LINE_CR1 582383 582652 41 - . . scaffold86 WUBlastX LINE_CR1 582473 582724 63 - . . scaffold86 WUBlastX LINE_CR1 582473 582652 93 - . . scaffold86 TRF Tandem_Repeat 583317 583969 840 + . . scaffold86 TRF Tandem_Repeat 584378 584428 102 + . . scaffold86 TRF Tandem_Repeat 595346 595412 125 + . . scaffold86 TRF Tandem_Repeat 596858 596904 85 + . . scaffold86 GLEAN promoter 597174 598173 0.999064 + . ID=CGI_10028161; scaffold86 GLEAN mRNA 598174 600613 0.999064 + . ID=CGI_10028161; scaffold86 TRF Tandem_Repeat 600277 600470 325 + . . scaffold86 GLEAN mRNA 603672 617496 0.499471 - . ID=CGI_10028162; scaffold86 TRF Tandem_Repeat 609111 609283 346 + . . scaffold86 TRF Tandem_Repeat 614793 614830 76 + . . scaffold86 GLEAN promoter 617497 618496 0.499471 - . ID=CGI_10028162; scaffold86 GLEAN mRNA 652077 655500 0.593383 - . ID=CGI_10028163; scaffold86 GLEAN promoter 655501 656500 0.593383 - . ID=CGI_10028163; scaffold86 GLEAN mRNA 657116 657664 1 - . ID=CGI_10028164; scaffold86 GLEAN promoter 657665 658664 1 - . ID=CGI_10028164; scaffold86 GLEAN promoter 659162 660161 0.999984 + . ID=CGI_10028165; scaffold86 GLEAN mRNA 660162 660809 0.999984 + . ID=CGI_10028165; scaffold86 GLEAN mRNA 661670 663353 0.999979 - . ID=CGI_10028166; scaffold86 GLEAN promoter 663354 664353 0.999979 - . ID=CGI_10028166; scaffold86 TRF Tandem_Repeat 667494 667549 62 + . . scaffold86 WUBlastX LINE_Proto2 668743 669534 100 - . . scaffold86 WUBlastX LINE_Proto2 668860 669531 112 - . . scaffold86 GLEAN promoter 686895 687894 0.992957 + . ID=CGI_10028167; scaffold86 GLEAN mRNA 687895 690246 0.992957 + . ID=CGI_10028167; scaffold86 WUBlastX LTR_Gypsy 691942 693324 398 - . . scaffold86 WUBlastX LTR_Gypsy 692179 693468 682 - . . scaffold86 WUBlastX LTR_Gypsy-Cigr 692254 693828 271 - . . scaffold86 WUBlastX LTR_Gypsy 693780 694319 282 - . . scaffold86 WUBlastX LTR_Gypsy 693885 694424 93 - . . scaffold86 WUBlastX LTR_ERV1 694942 694986 22 - . . scaffold86 WUBlastX LINE_L2 695906 696439 82 + . . scaffold86 WUBlastX LINE_L2 696516 696608 29 + . . scaffold86 GLEAN promoter 697775 698774 0.946427 + . ID=CGI_10028168; scaffold86 GLEAN mRNA 698775 699680 0.946427 + . ID=CGI_10028168; scaffold86 WUBlastX DNA_Kolobok-Hyd 698928 699368 41 + . . scaffold86 GLEAN mRNA 700195 700979 0.999871 - . ID=CGI_10028169; scaffold86 GLEAN promoter 700980 701979 0.999871 - . ID=CGI_10028169; scaffold86 WUBlastX LINE_L1-Tx1 702192 702308 63 + . . scaffold86 TRF Tandem_Repeat 702556 702595 53 + . . scaffold86 WUBlastX LINE_L1-Tx1 702642 702788 51 + . . scaffold86 WUBlastX LINE_L1-Tx1 702740 702991 83 + . . scaffold86 WUBlastX LINE_L1-Tx1 702800 703012 109 + . . scaffold86 WUBlastX LINE_L1-Tx1 703015 703155 47 + . . scaffold86 WUBlastX LINE_L1-Tx1 703122 704060 416 + . . scaffold86 WUBlastX LINE_L1-Tx1 703990 704325 152 + . . scaffold86 WUBlastX LINE_L1-Tx1 704306 705181 431 + . . scaffold86 WUBlastX LINE_L1-Tx1 705303 705476 29 + . . scaffold86 TRF Tandem_Repeat 707075 707860 587 + . . scaffold86 GLEAN mRNA 710163 720608 1 - . ID=CGI_10028170; scaffold86 GLEAN promoter 720609 721608 1 - . ID=CGI_10028170; scaffold86 GLEAN mRNA 745762 760347 0.557176 - . ID=CGI_10028171; scaffold86 TRF Tandem_Repeat 753771 753837 116 + . . scaffold86 TRF Tandem_Repeat 754420 754469 100 + . . scaffold86 GLEAN promoter 760348 761347 0.557176 - . ID=CGI_10028171; scaffold86 GLEAN mRNA 760598 760810 0.733495 - . ID=CGI_10028172; scaffold86 GLEAN promoter 760811 761810 0.733495 - . ID=CGI_10028172; scaffold86 TRF Tandem_Repeat 760998 761167 227 + . . scaffold86 TRF Tandem_Repeat 762217 762268 104 + . . scaffold86 TRF Tandem_Repeat 774850 774902 52 + . . scaffold86 TRF Tandem_Repeat 778772 778821 100 + . . scaffold86 GLEAN promoter 778953 779952 0.999676 + . ID=CGI_10028173; scaffold86 GLEAN mRNA 779953 786607 0.999676 + . ID=CGI_10028173; scaffold86 TRF Tandem_Repeat 787792 787917 134 + . . scaffold86 WUBlastX LINE_Penelope 789924 790427 28 + . . scaffold86 WUBlastX LINE_Penelope 790071 790427 71 + . . scaffold86 GLEAN mRNA 792304 796351 1 - . ID=CGI_10028174; scaffold86 GLEAN promoter 796352 797351 1 - . ID=CGI_10028174; scaffold86 TRF Tandem_Repeat 796843 797272 745 + . . scaffold86 WUBlastX LINE_RTE-X 800623 800715 52 + . . scaffold86 TRF Tandem_Repeat 801173 801297 80 + . . scaffold86 GLEAN promoter 803736 804735 1 + . ID=CGI_10028175; scaffold86 GLEAN mRNA 804736 823787 1 + . ID=CGI_10028175; scaffold86 GLEAN mRNA 805962 806681 0.999999 - . ID=CGI_10028176; scaffold86 WUBlastX LTR_Gypsy 806043 807479 1039 - . . scaffold86 GLEAN promoter 806682 807681 0.999999 - . ID=CGI_10028176; scaffold86 WUBlastX LINE_L1-Tx1 829560 829844 37 - . . scaffold86 WUBlastX LINE_L1-Tx1 834425 834814 38 - . . scaffold86 WUBlastX LINE_L1 834566 834850 46 - . . scaffold86 WUBlastX LINE_L1 834611 834925 35 - . . scaffold86 TRF Tandem_Repeat 836318 836349 55 + . . scaffold86 TRF Tandem_Repeat 845509 845558 57 + . . scaffold86 TRF Tandem_Repeat 845517 845559 70 + . . scaffold86 GLEAN promoter 860283 861282 0.990831 + . ID=CGI_10028177; scaffold86 GLEAN mRNA 861283 862005 0.990831 + . ID=CGI_10028177; scaffold86 WUBlastX LINE_CR1 862389 863003 99 + . . scaffold86 TRF Tandem_Repeat 865092 865136 63 + . . scaffold86 GLEAN mRNA 870001 907091 0.999675 - . ID=CGI_10028178; scaffold86 TRF Tandem_Repeat 878823 882223 4945 + . . scaffold86 TRF Tandem_Repeat 878823 882223 4990 + . . scaffold86 TRF Tandem_Repeat 878823 882218 5810 + . . scaffold86 TRF Tandem_Repeat 879110 879228 55 + . . scaffold86 TRF Tandem_Repeat 879815 879933 55 + . . scaffold86 TRF Tandem_Repeat 880614 880732 55 + . . scaffold86 TRF Tandem_Repeat 880943 881061 55 + . . scaffold86 TRF Tandem_Repeat 881742 881860 55 + . . scaffold86 TRF Tandem_Repeat 884772 885479 679 + . . scaffold86 TRF Tandem_Repeat 884823 885479 635 + . . scaffold86 TRF Tandem_Repeat 889779 890381 602 + . . scaffold86 TRF Tandem_Repeat 889857 890381 536 + . . scaffold86 TRF Tandem_Repeat 889975 890080 118 + . . scaffold86 TRF Tandem_Repeat 897203 897700 718 + . . scaffold86 GLEAN promoter 907092 908091 0.999675 - . ID=CGI_10028178; scaffold86 GLEAN promoter 909881 910880 1 + . ID=CGI_10028179; scaffold86 GLEAN mRNA 910881 911547 1 + . ID=CGI_10028179; scaffold86 TRF Tandem_Repeat 912130 912504 687 + . . scaffold86 GLEAN promoter 915791 916790 1 + . ID=CGI_10028180; scaffold86 GLEAN mRNA 916791 919076 1 + . ID=CGI_10028180; scaffold86 TRF Tandem_Repeat 918736 918780 90 + . . scaffold86 GLEAN mRNA 919835 943662 0.999351 - . ID=CGI_10028181; scaffold86 TRF Tandem_Repeat 921271 921536 383 + . . scaffold86 TRF Tandem_Repeat 924316 926105 2466 + . . scaffold86 GLEAN promoter 943663 944662 0.999351 - . ID=CGI_10028181; scaffold86 TRF Tandem_Repeat 944476 944957 528 + . . scaffold86 GLEAN mRNA 946107 947243 1 - . ID=CGI_10028182; scaffold86 GLEAN promoter 947244 948243 1 - . ID=CGI_10028182; scaffold86 GLEAN mRNA 955423 970741 1 - . ID=CGI_10028183; scaffold86 TRF Tandem_Repeat 965793 966296 777 + . . scaffold86 TRF Tandem_Repeat 966913 967016 120 + . . scaffold86 GLEAN promoter 970742 971741 1 - . ID=CGI_10028183; scaffold86 TRF Tandem_Repeat 975581 975619 78 + . . scaffold86 TRF Tandem_Repeat 979004 979074 115 + . . scaffold86 TRF Tandem_Repeat 979913 979982 140 + . . scaffold86 TRF Tandem_Repeat 979986 980456 457 + . . scaffold86 TRF Tandem_Repeat 987559 987650 121 + . . scaffold86 TRF Tandem_Repeat 987716 987889 215 + . . scaffold86 TRF Tandem_Repeat 987926 988024 99 + . . scaffold86 TRF Tandem_Repeat 988103 988196 107 + . . scaffold86 WUBlastX DNA_TcMar-Pogo 1004293 1005261 758 + . . scaffold86 TRF Tandem_Repeat 1005328 1005373 76 + . . scaffold86 WUBlastX DNA_TcMar-Pogo 1005451 1006008 46 + . . scaffold86 GLEAN mRNA 1007051 1026538 0.71092 - . ID=CGI_10028184; scaffold86 TRF Tandem_Repeat 1015170 1015220 102 + . . scaffold86 TRF Tandem_Repeat 1022552 1022589 76 + . . scaffold86 GLEAN promoter 1026539 1027538 0.71092 - . ID=CGI_10028184; scaffold86 TRF Tandem_Repeat 1027705 1027757 106 + . . scaffold86 WUBlastX DNA_TcMar-Pogo 1051818 1052261 55 - . . scaffold86 WUBlastX DNA_TcMar-Fot1 1051974 1052789 161 - . . scaffold86 WUBlastX DNA_TcMar-Fot1 1052031 1052699 168 - . . scaffold86 TRF Tandem_Repeat 1060990 1061045 85 + . . scaffold86 TRF Tandem_Repeat 1064268 1064298 53 + . . scaffold86 TRF Tandem_Repeat 1065189 1066122 1154 + . . scaffold86 GLEAN promoter 1066507 1067506 0.296354 + . ID=CGI_10028185; scaffold86 GLEAN mRNA 1067507 1069266 0.296354 + . ID=CGI_10028185; scaffold86 TRF Tandem_Repeat 1092423 1092468 51 + . . scaffold86 WUBlastX LINE_RTE-X 1113498 1114127 132 - . . scaffold86 WUBlastX LINE_RTE-X 1113498 1114016 153 - . . scaffold86 WUBlastX LINE_RTE-X 1114130 1114249 47 - . . scaffold86 WUBlastX LINE_RTE-X 1114163 1114507 218 - . . scaffold86 WUBlastX LINE_RTE-X 1114518 1115015 330 - . . scaffold86 WUBlastX LINE_Jockey 1114770 1115066 74 - . . scaffold86 GLEAN promoter 1115285 1116284 0.726791 + . ID=CGI_10028186; scaffold86 GLEAN mRNA 1116285 1117265 0.726791 + . ID=CGI_10028186; scaffold86 GLEAN promoter 1116393 1117392 0.999603 + . ID=CGI_10028187; scaffold86 GLEAN mRNA 1117393 1120295 0.999603 + . ID=CGI_10028187; scaffold86 TRF Tandem_Repeat 1118148 1118202 110 + . . scaffold86 GLEAN promoter 1120051 1121050 0.987944 + . ID=CGI_10028188; scaffold86 GLEAN mRNA 1121051 1125643 0.987944 + . ID=CGI_10028188; scaffold86 TRF Tandem_Repeat 1121576 1121604 58 + . . scaffold86 GLEAN mRNA 1128038 1130293 0.860565 - . ID=CGI_10028189; scaffold86 GLEAN promoter 1130294 1131293 0.860565 - . ID=CGI_10028189; scaffold86 TRF Tandem_Repeat 1135010 1135717 1052 + . . scaffold86 TRF Tandem_Repeat 1135010 1135717 1053 + . . scaffold86 GLEAN promoter 1137840 1138839 0.999922 + . ID=CGI_10028190; scaffold86 GLEAN mRNA 1138840 1139504 0.999922 + . ID=CGI_10028190; scaffold86 TRF Tandem_Repeat 1143889 1143923 52 + . . scaffold86 GLEAN promoter 1144246 1145245 1 + . ID=CGI_10028191; scaffold86 TRF Tandem_Repeat 1144870 1144933 85 + . . scaffold86 TRF Tandem_Repeat 1144870 1144933 74 + . . scaffold86 GLEAN mRNA 1145246 1163889 1 + . ID=CGI_10028191; scaffold86 TRF Tandem_Repeat 1167445 1167497 106 + . . scaffold86 GLEAN promoter 1173188 1174187 0.996149 + . ID=CGI_10028192; scaffold86 TRF Tandem_Repeat 1173519 1173704 173 + . . scaffold86 GLEAN mRNA 1174188 1187658 0.996149 + . ID=CGI_10028192; scaffold86 GLEAN mRNA 1193629 1210219 1 - . ID=CGI_10028193; scaffold86 TRF Tandem_Repeat 1193830 1194192 591 + . . scaffold86 TRF Tandem_Repeat 1194322 1194772 172 + . . scaffold86 TRF Tandem_Repeat 1194491 1194768 190 + . . scaffold86 TRF Tandem_Repeat 1197619 1197666 51 + . . scaffold86 TRF Tandem_Repeat 1197622 1197666 72 + . . scaffold86 GLEAN promoter 1210220 1211219 1 - . ID=CGI_10028193; scaffold86 GLEAN promoter 1216801 1217800 0.595105 + . ID=CGI_10028194; scaffold86 GLEAN mRNA 1217801 1219846 0.595105 + . ID=CGI_10028194; scaffold86 GLEAN mRNA 1223951 1226501 1 - . ID=CGI_10028195; scaffold86 GLEAN promoter 1226502 1227501 1 - . ID=CGI_10028195; scaffold86 GLEAN promoter 1226722 1227721 1 + . ID=CGI_10028196; scaffold86 TRF Tandem_Repeat 1227477 1227519 77 + . . scaffold86 GLEAN mRNA 1227722 1228156 1 + . ID=CGI_10028196; scaffold86 GLEAN promoter 1230261 1231260 0.605603 + . ID=CGI_10028197; scaffold86 GLEAN mRNA 1231261 1279248 0.605603 + . ID=CGI_10028197; scaffold86 TRF Tandem_Repeat 1236953 1237443 563 + . . scaffold86 TRF Tandem_Repeat 1236953 1237442 554 + . . scaffold86 TRF Tandem_Repeat 1236954 1237443 578 + . . scaffold86 TRF Tandem_Repeat 1241377 1241408 64 + . . scaffold86 TRF Tandem_Repeat 1251139 1251178 73 + . . scaffold86 WUBlastX LINE_RTE-BovB 1260053 1260484 70 - . . scaffold86 WUBlastX LINE_RTE-BovB 1260162 1260389 105 - . . scaffold86 GLEAN mRNA 1265674 1273938 1 - . ID=CGI_10028198; scaffold86 TRF Tandem_Repeat 1266660 1267565 1532 + . . scaffold86 GLEAN promoter 1273939 1274938 1 - . ID=CGI_10028198; scaffold86 WUBlastX LTR_Gypsy 1277453 1278139 41 - . . scaffold86 WUBlastX LTR_Gypsy-Cigr 1277510 1277977 149 - . . scaffold86 TRF Tandem_Repeat 1285064 1285117 67 + . . scaffold86 TRF Tandem_Repeat 1285064 1285097 50 + . . scaffold86 GLEAN mRNA 1288196 1297701 0.999994 - . ID=CGI_10028199; scaffold86 TRF Tandem_Repeat 1293913 1293991 158 + . . scaffold86 GLEAN promoter 1297702 1298701 0.999994 - . ID=CGI_10028199; scaffold86 TRF Tandem_Repeat 1300135 1300193 118 + . . scaffold86 GLEAN promoter 1300357 1301356 1 + . ID=CGI_10028200; scaffold86 GLEAN mRNA 1301357 1312853 1 + . ID=CGI_10028200; scaffold86 TRF Tandem_Repeat 1304516 1304584 102 + . . scaffold86 TRF Tandem_Repeat 1312543 1312568 52 + . . scaffold86 GLEAN mRNA 1317928 1319907 0.836185 - . ID=CGI_10028201; scaffold86 GLEAN promoter 1319908 1320907 0.836185 - . ID=CGI_10028201; scaffold86 GLEAN mRNA 1329592 1333983 0.999999 - . ID=CGI_10028202; scaffold86 GLEAN promoter 1333984 1334983 0.999999 - . ID=CGI_10028202; scaffold86 GLEAN mRNA 1350663 1354624 0.5119 - . ID=CGI_10028203; scaffold86 WUBlastX DNA_Kolobok-Hyd 1352593 1353180 47 - . . scaffold86 WUBlastX DNA_Kolobok-Hyd 1352824 1353174 53 - . . scaffold86 WUBlastX DNA_Kolobok-Hyd 1352917 1353276 46 - . . scaffold86 WUBlastX DNA_Kolobok-Hyd 1353452 1353520 29 - . . scaffold86 WUBlastX DNA_Kolobok-Hyd 1353470 1353544 33 - . . scaffold86 GLEAN promoter 1354625 1355624 0.5119 - . ID=CGI_10028203; scaffold86 GLEAN promoter 1361194 1362193 0.999323 + . ID=CGI_10028205; scaffold86 GLEAN mRNA 1362194 1363180 0.999323 + . ID=CGI_10028205; scaffold86 GLEAN promoter 1362860 1363859 0.567966 + . ID=CGI_10028206; scaffold86 GLEAN mRNA 1363860 1366120 0.567966 + . ID=CGI_10028206; scaffold86 GLEAN mRNA 1375917 1383181 1 - . ID=CGI_10028207; scaffold86 TRF Tandem_Repeat 1380557 1380604 71 + . . scaffold86 TRF Tandem_Repeat 1381792 1381849 55 + . . scaffold86 GLEAN promoter 1382418 1383417 0.593191 + . ID=CGI_10028208; scaffold86 GLEAN promoter 1383182 1384181 1 - . ID=CGI_10028207; scaffold86 GLEAN mRNA 1383418 1396069 0.593191 + . ID=CGI_10028208; scaffold86 GLEAN promoter 1398779 1399778 1 + . ID=CGI_10028209; scaffold86 GLEAN mRNA 1399779 1406242 1 + . ID=CGI_10028209; scaffold86 WUBlastX DNA_Sola 1417068 1419053 549 + . . scaffold86 WUBlastX DNA_Sola 1417407 1419107 773 + . . scaffold86 WUBlastX DNA_Sola 1417896 1419101 818 + . . scaffold86 WUBlastX DNA_En-Spm 1419930 1420118 58 + . . scaffold86 WUBlastX DNA_En-Spm 1420377 1420592 26 + . . scaffold86 TRF Tandem_Repeat 1420983 1421020 58 + . . scaffold86 TRF Tandem_Repeat 1421467 1421522 71 + . . scaffold86 TRF Tandem_Repeat 1421471 1421525 65 + . . scaffold86 GLEAN mRNA 1422003 1423861 0.840265 - . ID=CGI_10028211; scaffold86 GLEAN promoter 1423862 1424861 0.840265 - . ID=CGI_10028211; scaffold86 WUBlastX LINE_L2 1436140 1436679 53 + . . scaffold86 WUBlastX LINE_L2 1436251 1436667 66 + . . scaffold86 WUBlastX LTR_Gypsy 1441427 1441843 41 + . . scaffold86 WUBlastX LTR_Gypsy 1441520 1441840 78 + . . scaffold86 TRF Tandem_Repeat 1443563 1443609 76 + . . scaffold86 WUBlastX DNA_Maverick 1446107 1446244 27 + . . scaffold86 WUBlastX DNA_Maverick 1446148 1446432 62 + . . scaffold86 WUBlastX DNA_Maverick 1446235 1446516 116 + . . scaffold86 WUBlastX DNA_Maverick 1446466 1446678 134 + . . scaffold86 WUBlastX DNA_Maverick 1446708 1447088 107 + . . scaffold86 WUBlastX LTR_Copia 1454647 1454730 21 + . . scaffold86 WUBlastX LTR_Gypsy 1455289 1455972 47 + . . scaffold86 WUBlastX DNA_Maverick 1455442 1456317 383 + . . scaffold86 GLEAN promoter 1456069 1457068 0.558391 + . ID=CGI_10028212; scaffold86 WUBlastX DNA_Maverick 1456332 1456463 112 + . . scaffold86 WUBlastX DNA_Maverick 1456457 1456555 49 + . . scaffold86 WUBlastX DNA_Maverick 1456611 1456754 20 + . . scaffold86 WUBlastX DNA_Maverick 1456761 1456994 66 + . . scaffold86 GLEAN mRNA 1457069 1457449 0.558391 + . ID=CGI_10028212; scaffold86 WUBlastX DNA_Maverick 1457452 1458210 374 + . . scaffold86 WUBlastX DNA_Maverick 1464497 1464826 72 - . . scaffold86 GLEAN mRNA 1464976 1470325 0.915869 - . ID=CGI_10028213; scaffold86 TRF Tandem_Repeat 1465908 1467032 1582 + . . scaffold86 GLEAN promoter 1470326 1471325 0.915869 - . ID=CGI_10028213; scaffold86 WUBlastX DNA_Kolobok-IS4 1474032 1475018 503 + . . scaffold86 WUBlastX DNA_Kolobok-IS4 1475307 1475951 181 - . . scaffold86 WUBlastX DNA_IS4EU 1475316 1476086 156 - . . scaffold86 WUBlastX DNA_Kolobok-IS4 1476144 1476809 86 - . . scaffold86 WUBlastX DNA_Kolobok-IS4 1476204 1476755 102 - . . scaffold86 WUBlastX DNA_Kolobok-IS4 1477075 1477161 20 - . . scaffold86 WUBlastX DNA_MuDR 1477837 1478226 127 + . . scaffold86 WUBlastX DNA_MuDR 1477852 1478340 63 + . . scaffold86 WUBlastX DNA_MuDR 1478259 1478468 45 + . . scaffold86 WUBlastX LINE_L1-Tx1 1481038 1482486 289 - . . scaffold86 WUBlastX LINE_Penelope 1482652 1482855 47 - . . scaffold86 WUBlastX LINE_L1 1483133 1483288 60 - . . scaffold86 WUBlastX LINE_L1-Tx1 1483157 1483357 108 - . . scaffold86 WUBlastX LINE_L1 1483339 1483530 106 - . . scaffold86 WUBlastX LINE_L1 1483357 1483683 90 - . . scaffold86 WUBlastX LINE_RTE-BovB 1483363 1483782 36 - . . scaffold86 TRF Tandem_Repeat 1485203 1485236 59 + . . scaffold86 TRF Tandem_Repeat 1488055 1488114 120 + . . scaffold86 TRF Tandem_Repeat 1489723 1489786 83 + . . scaffold86 WUBlastX LTR_Pao 1494003 1494368 116 - . . scaffold86 WUBlastX LTR_Pao 1494078 1494398 332 - . . scaffold86 WUBlastX LTR_Pao 1494385 1495410 1077 - . . scaffold86 WUBlastX LTR_Pao 1494400 1495617 705 - . . scaffold86 WUBlastX LTR_Pao 1496828 1496908 26 - . . scaffold86 GLEAN mRNA 1500373 1502880 0.568677 - . ID=CGI_10028217; scaffold86 WUBlastX LTR_Pao 1500391 1500537 42 - . . scaffold86 WUBlastX LTR_Pao 1500475 1501197 41 - . . scaffold86 GLEAN promoter 1502881 1503880 0.568677 - . ID=CGI_10028217; scaffold86 TRF Tandem_Repeat 1511406 1511444 78 + . . scaffold86 TRF Tandem_Repeat 1513305 1513655 451 + . . scaffold86 TRF Tandem_Repeat 1513305 1513655 428 + . . scaffold86 WUBlastX DNA_Sola 1524400 1524879 140 + . . scaffold86 GLEAN mRNA 1530077 1530667 0.449198 - . ID=CGI_10028218; scaffold86 GLEAN promoter 1530668 1531667 0.449198 - . ID=CGI_10028218; scaffold86 WUBlastX LTR_Ngaro 1530784 1531752 374 - . . scaffold86 WUBlastX LTR_Ngaro 1531690 1532487 473 - . . scaffold86 WUBlastX LTR_Ngaro 1532483 1532998 373 - . . scaffold86 WUBlastX LTR_Ngaro 1533083 1534006 242 - . . scaffold86 TRF Tandem_Repeat 1541403 1541469 71 + . . scaffold86 GLEAN mRNA 1548846 1559397 0.981588 - . ID=CGI_10028219; scaffold86 TRF Tandem_Repeat 1553838 1553925 68 + . . scaffold86 TRF Tandem_Repeat 1557690 1557726 74 + . . scaffold86 TRF Tandem_Repeat 1557724 1557772 98 + . . scaffold86 GLEAN promoter 1559398 1560397 0.981588 - . ID=CGI_10028219; scaffold86 TRF Tandem_Repeat 1560563 1560618 62 + . . scaffold86 TRF Tandem_Repeat 1560563 1560618 62 + . . scaffold86 TRF Tandem_Repeat 1560572 1560604 52 + . . scaffold86 GLEAN promoter 1560613 1561612 0.999675 + . ID=CGI_10028220; scaffold86 GLEAN mRNA 1561613 1563303 0.999675 + . ID=CGI_10028220; scaffold86 GLEAN mRNA 1564050 1569702 1 - . ID=CGI_10028221; scaffold86 GLEAN promoter 1569703 1570702 1 - . ID=CGI_10028221; scaffold86 GLEAN promoter 1571765 1572764 1 + . ID=CGI_10028222; scaffold86 GLEAN mRNA 1572765 1587635 1 + . ID=CGI_10028222; scaffold86 TRF Tandem_Repeat 1578015 1578062 62 + . . scaffold86 TRF Tandem_Repeat 1580160 1580185 52 + . . scaffold86 TRF Tandem_Repeat 1585054 1586833 1170 + . . scaffold86 TRF Tandem_Repeat 1585254 1585386 257 + . . scaffold86 GLEAN promoter 1588746 1589745 1 + . ID=CGI_10028223; scaffold86 GLEAN mRNA 1589746 1593614 1 + . ID=CGI_10028223; scaffold86 TRF Tandem_Repeat 1591782 1592101 140 + . . scaffold86 WUBlastX LINE_L1-Tx1 1594276 1594476 23 + . . scaffold86 WUBlastX LINE_L1-Tx1 1594419 1595105 51 + . . scaffold86 WUBlastX LINE_L1-Tx1 1594464 1595039 92 + . . scaffold86 WUBlastX LINE_L1 1594476 1594739 104 + . . scaffold86 GLEAN mRNA 1601244 1607596 1 - . ID=CGI_10028224; scaffold86 GLEAN promoter 1607597 1608596 1 - . ID=CGI_10028224; scaffold86 TRF Tandem_Repeat 1616930 1616980 102 + . . scaffold86 TRF Tandem_Repeat 1618049 1618075 54 + . . scaffold86 WUBlastX LINE_RTE-X 1621613 1622032 105 - . . scaffold86 WUBlastX LINE_RTE-X 1621727 1623187 267 - . . scaffold86 WUBlastX LINE_RTE-X 1622588 1623169 337 - . . scaffold86 WUBlastX LINE_L2 1622807 1623370 118 - . . scaffold86 WUBlastX LINE_RTE-X 1623221 1623448 59 - . . scaffold86 GLEAN promoter 1629792 1630791 0.503492 + . ID=CGI_10028225; scaffold86 GLEAN mRNA 1630792 1644608 0.503492 + . ID=CGI_10028225; scaffold86 TRF Tandem_Repeat 1635621 1635680 120 + . . scaffold86 TRF Tandem_Repeat 1635738 1635768 62 + . . scaffold86 GLEAN mRNA 1646771 1667908 0.99992 - . ID=CGI_10028226; scaffold86 TRF Tandem_Repeat 1649578 1649791 83 + . . scaffold86 TRF Tandem_Repeat 1665171 1666256 1481 + . . scaffold86 GLEAN promoter 1667267 1668266 0.998274 + . ID=CGI_10028227; scaffold86 GLEAN promoter 1667909 1668908 0.99992 - . ID=CGI_10028226; scaffold86 GLEAN mRNA 1668267 1671380 0.998274 + . ID=CGI_10028227; scaffold86 GLEAN mRNA 1682824 1683800 1 - . ID=CGI_10028228; scaffold86 TRF Tandem_Repeat 1683291 1683325 70 + . . scaffold86 GLEAN promoter 1683801 1684800 1 - . ID=CGI_10028228; scaffold86 GLEAN promoter 1684972 1685971 0.941293 + . ID=CGI_10028229; scaffold86 GLEAN mRNA 1685972 1696645 0.941293 + . ID=CGI_10028229; scaffold86 TRF Tandem_Repeat 1686648 1687513 1418 + . . scaffold86 TRF Tandem_Repeat 1694229 1694265 56 + . . scaffold864 WUBlastX DNA_TcMar-Stowa 2452 2757 20 - . . scaffold864 WUBlastX DNA_TcMar-Tc1 2563 2823 116 - . . scaffold864 WUBlastX DNA_TcMar-Tc1 2784 3161 105 - . . scaffold864 GLEAN promoter 2813 3812 0.999675 + . ID=CGI_10000787; scaffold864 WUBlastX DNA_TcMar-Tc1 3140 3544 121 - . . scaffold864 GLEAN mRNA 3813 8570 0.999675 + . ID=CGI_10000787; scaffold865 TRF Tandem_Repeat 5587 5647 104 + . . scaffold865 GLEAN mRNA 7384 21120 0.465325 - . ID=CGI_10002639; scaffold865 TRF Tandem_Repeat 11825 11865 82 + . . scaffold865 WUBlastX LTR_Ngaro 18910 19071 87 - . . scaffold865 WUBlastX LTR_Ngaro 19112 19837 101 - . . scaffold865 WUBlastX LTR_Ngaro 19112 19495 125 - . . scaffold865 TRF Tandem_Repeat 20221 20795 459 + . . scaffold865 TRF Tandem_Repeat 20288 20794 517 + . . scaffold865 GLEAN promoter 21121 22120 0.465325 - . ID=CGI_10002639; scaffold866 GLEAN promoter 9984 10983 0.994534 + . ID=CGI_10004739; scaffold866 GLEAN mRNA 10984 14614 0.994534 + . ID=CGI_10004739; scaffold866 WUBlastX LTR_DIRS? 15619 15975 117 - . . scaffold866 WUBlastX LTR_DIRS 16237 16731 213 - . . scaffold866 WUBlastX LTR_DIRS 16743 16919 79 - . . scaffold866 WUBlastX LTR_DIRS 16931 17824 248 - . . scaffold866 WUBlastX LTR_DIRS 17983 18030 20 - . . scaffold866 TRF Tandem_Repeat 20937 21311 531 + . . scaffold866 TRF Tandem_Repeat 20937 21311 570 + . . scaffold866 GLEAN promoter 21384 22383 0.996072 + . ID=CGI_10004740; scaffold866 GLEAN mRNA 22384 37745 0.996072 + . ID=CGI_10004740; scaffold866 TRF Tandem_Repeat 22532 22612 162 + . . scaffold866 TRF Tandem_Repeat 30818 30861 88 + . . scaffold866 GLEAN promoter 42592 43591 0.734569 + . ID=CGI_10004741; scaffold866 TRF Tandem_Repeat 42925 42980 60 + . . scaffold866 TRF Tandem_Repeat 42925 42980 78 + . . scaffold866 GLEAN mRNA 43592 46151 0.734569 + . ID=CGI_10004741; scaffold866 TRF Tandem_Repeat 45276 45438 287 + . . scaffold866 GLEAN promoter 46434 47433 0.6496 + . ID=CGI_10004742; scaffold866 GLEAN mRNA 47434 48000 0.6496 + . ID=CGI_10004742; scaffold866 WUBlastX DNA_TcMar-Tc2 47452 47958 54 + . . scaffold866 WUBlastX DNA_TcMar-Tc2 47602 47970 89 + . . scaffold866 TRF Tandem_Repeat 50939 51026 176 + . . scaffold866 WUBlastX LINE_RTE-BovB 52158 52238 23 - . . scaffold866 GLEAN promoter 52284 53283 0.554554 + . ID=CGI_10004743; scaffold866 WUBlastX LINE_RTE-BovB 52294 52404 43 - . . scaffold866 WUBlastX LINE_RTE-BovB 52409 52540 56 - . . scaffold866 WUBlastX LINE_RTE-BovB 52412 52564 29 - . . scaffold866 TRF Tandem_Repeat 52587 52622 54 + . . scaffold866 TRF Tandem_Repeat 52624 52715 157 + . . scaffold866 GLEAN mRNA 53284 55157 0.554554 + . ID=CGI_10004743; scaffold866 GLEAN promoter 54316 55315 0.999981 + . ID=CGI_10004744; scaffold866 TRF Tandem_Repeat 54357 54409 106 + . . scaffold866 GLEAN mRNA 55316 60473 0.999981 + . ID=CGI_10004744; scaffold866 GLEAN mRNA 56513 69570 0.842996 - . ID=CGI_10004745; scaffold866 TRF Tandem_Repeat 57077 57186 197 + . . scaffold866 GLEAN promoter 59753 60752 0.999832 + . ID=CGI_10004746; scaffold866 TRF Tandem_Repeat 60620 60669 100 + . . scaffold866 GLEAN mRNA 60753 61442 0.999832 + . ID=CGI_10004746; scaffold866 TRF Tandem_Repeat 62786 63508 1091 + . . scaffold866 TRF Tandem_Repeat 68675 68707 57 + . . scaffold866 GLEAN promoter 69571 70570 0.842996 - . ID=CGI_10004745; scaffold866 TRF Tandem_Repeat 70541 70607 62 + . . scaffold866 GLEAN mRNA 79310 79705 0.999372 - . ID=CGI_10004747; scaffold866 GLEAN promoter 79706 80705 0.999372 - . ID=CGI_10004747; scaffold866 GLEAN promoter 79769 80768 1 + . ID=CGI_10004748; scaffold866 GLEAN mRNA 80769 81155 1 + . ID=CGI_10004748; scaffold866 GLEAN promoter 84549 85548 0.993209 + . ID=CGI_10004749; scaffold866 GLEAN mRNA 85549 108844 0.993209 + . ID=CGI_10004749; scaffold866 WUBlastX DNA_Sola 87388 87609 43 + . . scaffold866 WUBlastX DNA_Sola 87454 87627 86 + . . scaffold866 TRF Tandem_Repeat 90552 90598 85 + . . scaffold866 WUBlastX DNA_Sola 91547 91723 109 + . . scaffold866 TRF Tandem_Repeat 92924 92984 122 + . . scaffold866 WUBlastX LINE_RTE-X 94615 94965 193 + . . scaffold866 WUBlastX LINE_RTE-X 94615 95031 108 + . . scaffold866 WUBlastX LINE_RTE-X 95025 95159 66 + . . scaffold866 WUBlastX LINE_L2 95251 95469 32 + . . scaffold866 WUBlastX LINE_RTE-X 95287 95562 95 + . . scaffold866 WUBlastX LINE_RTE-X 95666 95749 48 + . . scaffold866 TRF Tandem_Repeat 106102 106141 64 + . . scaffold867 WUBlastX DNA_TcMar-Tc1 1067 1462 181 - . . scaffold867 WUBlastX DNA_TcMar-Tc1 1429 1995 177 - . . scaffold867 GLEAN promoter 2265 3264 0.999351 + . ID=CGI_10026210; scaffold867 GLEAN mRNA 3265 13655 0.999351 + . ID=CGI_10026210; scaffold867 WUBlastX LINE_L1 3511 3978 29 + . . scaffold867 WUBlastX LINE_L1-Tx1 3595 3978 84 + . . scaffold867 WUBlastX LINE_L1-Tx1 3655 4005 114 + . . scaffold867 WUBlastX LINE_L1-Tx1 4110 4976 78 + . . scaffold867 GLEAN mRNA 16992 18174 1 - . ID=CGI_10026211; scaffold867 GLEAN promoter 18175 19174 1 - . ID=CGI_10026211; scaffold867 TRF Tandem_Repeat 19473 19537 100 + . . scaffold867 TRF Tandem_Repeat 19598 19678 109 + . . scaffold867 TRF Tandem_Repeat 19599 19679 87 + . . scaffold867 WUBlastX LINE_L2 28765 29172 60 + . . scaffold867 WUBlastX LINE_CR1 28840 29403 69 + . . scaffold867 WUBlastX LINE_RTE-X 28948 31104 653 + . . scaffold867 WUBlastX LINE_RTE-X 32961 33347 89 + . . scaffold867 TRF Tandem_Repeat 33376 33435 57 + . . scaffold867 GLEAN mRNA 44311 73250 0.648712 - . ID=CGI_10026212; scaffold867 TRF Tandem_Repeat 61725 61774 57 + . . scaffold867 TRF Tandem_Repeat 64267 64293 54 + . . scaffold867 TRF Tandem_Repeat 64295 64334 80 + . . scaffold867 TRF Tandem_Repeat 66098 66162 85 + . . scaffold867 GLEAN promoter 73251 74250 0.648712 - . ID=CGI_10026212; scaffold867 GLEAN mRNA 77225 83239 0.999377 - . ID=CGI_10026213; scaffold867 TRF Tandem_Repeat 78945 79013 120 + . . scaffold867 TRF Tandem_Repeat 80516 80553 76 + . . scaffold867 TRF Tandem_Repeat 80735 80768 68 + . . scaffold867 GLEAN promoter 83240 84239 0.999377 - . ID=CGI_10026213; scaffold867 TRF Tandem_Repeat 87421 87687 369 + . . scaffold867 TRF Tandem_Repeat 90659 90708 84 + . . scaffold867 TRF Tandem_Repeat 91088 91117 60 + . . scaffold867 GLEAN mRNA 96068 101065 0.999073 - . ID=CGI_10026214; scaffold867 TRF Tandem_Repeat 98499 99053 770 + . . scaffold867 GLEAN promoter 101066 102065 0.999073 - . ID=CGI_10026214; scaffold867 WUBlastX LINE_RTE-X 105449 105703 131 - . . scaffold867 WUBlastX LINE_RTE-X 105449 105649 132 - . . scaffold867 WUBlastX LINE_RTE-X 105681 105998 96 - . . scaffold867 WUBlastX LINE_RTE-X 105910 106152 27 - . . scaffold867 WUBlastX LINE_RTE-X 106057 106152 53 - . . scaffold867 WUBlastX LINE_RTE-X 106072 106176 63 - . . scaffold867 WUBlastX LINE_RTE-X 106072 106218 30 - . . scaffold867 TRF Tandem_Repeat 108182 108210 58 + . . scaffold867 TRF Tandem_Repeat 108391 108457 57 + . . scaffold867 TRF Tandem_Repeat 108393 108465 65 + . . scaffold867 TRF Tandem_Repeat 108399 108435 56 + . . scaffold867 TRF Tandem_Repeat 108425 108466 66 + . . scaffold867 TRF Tandem_Repeat 108961 109027 64 + . . scaffold867 TRF Tandem_Repeat 119430 119489 66 + . . scaffold867 TRF Tandem_Repeat 119579 119612 68 + . . scaffold867 TRF Tandem_Repeat 119612 119691 115 + . . scaffold867 TRF Tandem_Repeat 132759 132814 112 + . . scaffold867 TRF Tandem_Repeat 139272 139368 64 + . . scaffold867 TRF Tandem_Repeat 139272 139338 62 + . . scaffold867 TRF Tandem_Repeat 139272 139375 101 + . . scaffold867 WUBlastX LTR_Ngaro 139794 140120 37 - . . scaffold867 WUBlastX LTR_Ngaro 140027 140563 257 - . . scaffold867 WUBlastX LTR_Ngaro 140572 140727 75 - . . scaffold867 WUBlastX LTR_Ngaro 140697 141023 181 - . . scaffold867 WUBlastX LTR_Ngaro 141026 141172 63 - . . scaffold867 WUBlastX LTR_Ngaro 141079 141423 93 - . . scaffold867 WUBlastX LTR_Ngaro 141136 141576 152 - . . scaffold867 WUBlastX LTR_Ngaro 141136 141492 229 - . . scaffold867 WUBlastX LTR_Ngaro 141459 141656 53 - . . scaffold867 WUBlastX LTR_Ngaro 141670 142131 60 - . . scaffold867 WUBlastX LTR_Ngaro 141736 142113 83 - . . scaffold867 WUBlastX LTR_Ngaro 141823 142113 149 - . . scaffold867 WUBlastX LTR_Ngaro 142155 142298 20 - . . scaffold867 WUBlastX LTR_Ngaro 142197 142259 30 - . . scaffold867 TRF Tandem_Repeat 151293 151348 112 + . . scaffold867 TRF Tandem_Repeat 152789 152842 90 + . . scaffold867 TRF Tandem_Repeat 163723 163782 66 + . . scaffold867 TRF Tandem_Repeat 163724 163770 60 + . . scaffold867 TRF Tandem_Repeat 171122 171151 60 + . . scaffold867 WUBlastX LTR_Ngaro 179448 179918 279 - . . scaffold867 WUBlastX LTR_Ngaro 179918 180082 57 - . . scaffold867 WUBlastX LTR_Ngaro 179918 180010 59 - . . scaffold867 WUBlastX LTR_Ngaro 180082 180231 58 - . . scaffold867 WUBlastX LTR_Ngaro 180309 180395 23 - . . scaffold867 TRF Tandem_Repeat 181975 182019 90 + . . scaffold867 TRF Tandem_Repeat 185372 185410 69 + . . scaffold867 TRF Tandem_Repeat 193676 193762 111 + . . scaffold867 TRF Tandem_Repeat 199259 199292 59 + . . scaffold867 WUBlastX LINE_RTE-X 209342 209569 35 + . . scaffold867 WUBlastX LINE_RTE-X 209390 209545 53 + . . scaffold867 WUBlastX LINE_RTE-X 209614 209784 38 + . . scaffold867 WUBlastX LINE_RTE-X 209659 209790 43 + . . scaffold867 WUBlastX LINE_RTE-X 209719 209814 31 + . . scaffold867 WUBlastX LINE_RTE-X 209817 209969 79 + . . scaffold867 WUBlastX LINE_RTE-X 209832 210044 21 + . . scaffold867 WUBlastX LTR_Gypsy 217382 219013 371 - . . scaffold867 WUBlastX LTR_Gypsy 218394 219257 210 - . . scaffold867 WUBlastX LTR_Gypsy 219271 221250 908 - . . scaffold867 WUBlastX LINE_L2 221822 222154 129 - . . scaffold867 WUBlastX LTR_Gypsy 237319 237426 27 - . . scaffold867 WUBlastX LTR_Copia 237760 237888 22 - . . scaffold867 WUBlastX LTR_Gypsy 237786 237869 24 - . . scaffold867 WUBlastX LTR_Gypsy 237806 237991 30 - . . scaffold867 WUBlastX LTR_Gypsy 237835 238674 278 - . . scaffold867 WUBlastX LTR_Gypsy 237961 238650 365 - . . scaffold867 WUBlastX LTR_Gypsy 238222 238812 147 - . . scaffold867 WUBlastX LTR_Gypsy 238783 239823 717 - . . scaffold867 WUBlastX LTR_Gypsy 238957 239814 764 - . . scaffold867 WUBlastX LTR_Gypsy 239038 239997 619 - . . scaffold867 WUBlastX LTR_Gypsy 239733 240182 378 - . . scaffold867 WUBlastX LTR_Gypsy 239811 240269 245 - . . scaffold867 WUBlastX LTR_Ngaro 244725 245282 37 - . . scaffold867 WUBlastX DNA_IS4EU 247087 247266 72 - . . scaffold867 TRF Tandem_Repeat 252784 252841 73 + . . scaffold867 TRF Tandem_Repeat 252784 252841 73 + . . scaffold867 TRF Tandem_Repeat 252787 252840 56 + . . scaffold867 GLEAN mRNA 253182 264678 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX LINE_L1-Tx1 254126 254347 45 + . . scaffold867 WUBlastX LINE_L1-Tx1 254168 254353 55 + . . scaffold867 WUBlastX LINE_L1-Tx1 254198 254383 100 + . . scaffold867 WUBlastX LINE_L1 254362 254490 64 + . . scaffold867 WUBlastX LINE_L1-Tx1 254377 254598 52 + . . scaffold867 WUBlastX DNA_TcMar-Tc1 254820 255548 263 + . . scaffold867 WUBlastX DNA_TcMar-Tc1 255483 255596 48 + . . scaffold867 WUBlastX DNA_TcMar-Tc1 255586 255795 145 + . . scaffold867 WUBlastX LINE_L1 256027 256314 66 + . . scaffold867 WUBlastX LINE_L1-Tx1 256030 256272 84 + . . scaffold867 WUBlastX LINE_L1-Tx1 256313 256399 30 + . . scaffold867 WUBlastX LINE_L1-Tx1 256334 256414 21 + . . scaffold867 TRF Tandem_Repeat 260940 261967 977 + . . scaffold867 GLEAN promoter 264679 265678 0.938203 - . ID=CGI_10026215; scaffold867 WUBlastX DNA_TcMar-Marin 268744 269433 91 + . . scaffold867 WUBlastX DNA_TcMar-Tc1 268834 269403 143 + . . scaffold867 TRF Tandem_Repeat 270853 270912 104 + . . scaffold867 GLEAN promoter 271568 272567 0.996494 + . ID=CGI_10026216; scaffold867 TRF Tandem_Repeat 271809 271962 175 + . . scaffold867 GLEAN mRNA 272568 288334 0.996494 + . ID=CGI_10026216; scaffold867 TRF Tandem_Repeat 281741 281889 120 + . . scaffold867 WUBlastX DNA_Harbinger 284044 285066 247 + . . scaffold867 WUBlastX DNA_Harbinger 284779 285117 95 + . . scaffold867 GLEAN mRNA 285571 286149 0.588905 - . ID=CGI_10026217; scaffold867 GLEAN promoter 286150 287149 0.588905 - . ID=CGI_10026217; scaffold867 GLEAN promoter 289200 290199 0.999676 + . ID=CGI_10026218; scaffold867 TRF Tandem_Repeat 289950 289994 90 + . . scaffold867 GLEAN mRNA 290200 299286 0.999676 + . ID=CGI_10026218; scaffold867 TRF Tandem_Repeat 293633 293919 249 + . . scaffold867 GLEAN promoter 300136 301135 1 + . ID=CGI_10026219; scaffold867 GLEAN mRNA 301136 305641 1 + . ID=CGI_10026219; scaffold867 TRF Tandem_Repeat 305833 305893 122 + . . scaffold867 GLEAN mRNA 307445 310863 1 - . ID=CGI_10026220; scaffold867 GLEAN promoter 310864 311863 1 - . ID=CGI_10026220; scaffold867 TRF Tandem_Repeat 312128 312520 403 + . . scaffold867 TRF Tandem_Repeat 312128 312531 467 + . . scaffold867 TRF Tandem_Repeat 312132 312531 363 + . . scaffold867 TRF Tandem_Repeat 316213 316256 88 + . . scaffold867 GLEAN promoter 316704 317703 1 + . ID=CGI_10026221; scaffold867 GLEAN mRNA 317704 318402 1 + . ID=CGI_10026221; scaffold867 GLEAN promoter 325393 326392 0.777732 + . ID=CGI_10026222; scaffold867 TRF Tandem_Repeat 325466 326301 1057 + . . scaffold867 TRF Tandem_Repeat 325466 326301 1057 + . . scaffold867 GLEAN mRNA 326393 330464 0.777732 + . ID=CGI_10026222; scaffold867 GLEAN promoter 330754 331753 0.325534 + . ID=CGI_10026223; scaffold867 GLEAN mRNA 331754 354904 0.325534 + . ID=CGI_10026223; scaffold867 GLEAN mRNA 333757 346137 0.999674 - . ID=CGI_10026224; scaffold867 TRF Tandem_Repeat 338841 338925 161 + . . scaffold867 TRF Tandem_Repeat 341221 341261 82 + . . scaffold867 GLEAN promoter 346138 347137 0.999674 - . ID=CGI_10026224; scaffold867 TRF Tandem_Repeat 350396 350436 82 + . . scaffold867 TRF Tandem_Repeat 351337 351394 98 + . . scaffold867 GLEAN mRNA 358684 363633 0.997753 - . ID=CGI_10026225; scaffold867 TRF Tandem_Repeat 361125 361451 460 + . . scaffold867 TRF Tandem_Repeat 361549 361598 100 + . . scaffold867 GLEAN promoter 363634 364633 0.997753 - . ID=CGI_10026225; scaffold867 TRF Tandem_Repeat 367474 367558 161 + . . scaffold867 GLEAN mRNA 368921 382530 0.998821 - . ID=CGI_10026226; scaffold867 TRF Tandem_Repeat 380739 380765 54 + . . scaffold867 GLEAN promoter 382531 383530 0.998821 - . ID=CGI_10026226; scaffold867 GLEAN mRNA 384783 388438 0.776967 - . ID=CGI_10026227; scaffold867 GLEAN promoter 388439 389438 0.776967 - . ID=CGI_10026227; scaffold867 GLEAN promoter 390700 391699 1 + . ID=CGI_10026228; scaffold867 GLEAN mRNA 391700 393063 1 + . ID=CGI_10026228; scaffold867 WUBlastX LINE_RTE-X 397432 397611 71 + . . scaffold867 WUBlastX LINE_RTE-X 397483 397662 92 + . . scaffold867 WUBlastX LINE_RTE-X 397719 397943 39 + . . scaffold867 WUBlastX LINE_RTE-X 397773 397925 51 + . . scaffold867 WUBlastX LINE_RTE-X 397922 398338 76 + . . scaffold867 WUBlastX LINE_RTE-X 397925 398419 38 + . . scaffold867 WUBlastX LINE_RTE-X 398460 398549 33 + . . scaffold867 WUBlastX LINE_RTE-X 398549 398611 21 + . . scaffold867 GLEAN promoter 402623 403622 1 + . ID=CGI_10026229; scaffold867 GLEAN mRNA 403623 404843 1 + . ID=CGI_10026229; scaffold867 TRF Tandem_Repeat 406459 406492 68 + . . scaffold867 GLEAN mRNA 409873 443119 0.131277 - . ID=CGI_10026230; scaffold867 TRF Tandem_Repeat 420204 420297 179 + . . scaffold867 GLEAN promoter 443120 444119 0.131277 - . ID=CGI_10026230; scaffold867 GLEAN promoter 443299 444298 0.99533 + . ID=CGI_10026231; scaffold867 GLEAN mRNA 444299 471975 0.99533 + . ID=CGI_10026231; scaffold867 TRF Tandem_Repeat 456095 456139 56 + . . scaffold867 WUBlastX LINE_RTE-X 476568 476720 21 - . . scaffold867 WUBlastX LINE_RTE-X 476577 476675 34 - . . scaffold867 WUBlastX LINE_RTE-X 476696 477766 467 - . . scaffold867 WUBlastX LINE_L2 477754 477936 64 - . . scaffold867 WUBlastX LINE_RTE-X 477811 477939 71 - . . scaffold867 WUBlastX LINE_RTE-X 477811 478050 41 - . . scaffold867 WUBlastX LINE_RTE-X 477814 478011 59 - . . scaffold867 WUBlastX LINE_L2 477835 478089 21 - . . scaffold867 TRF Tandem_Repeat 478470 479262 994 + . . scaffold867 WUBlastX LINE_L2 479916 480533 190 + . . scaffold867 WUBlastX LINE_CR1 480610 481140 92 + . . scaffold867 WUBlastX LINE_L2 480697 481134 297 + . . scaffold867 WUBlastX LINE_CR1 480757 481290 123 + . . scaffold867 WUBlastX LINE_L2 481587 481649 22 + . . scaffold867 TRF Tandem_Repeat 485030 485764 980 + . . scaffold867 TRF Tandem_Repeat 485980 486147 138 + . . scaffold867 WUBlastX LINE_RTE-X 487082 489172 216 - . . scaffold867 WUBlastX LINE_RTE-X 487409 489355 435 - . . scaffold867 WUBlastX LINE_RTE-X 487691 489973 360 - . . scaffold867 WUBlastX LINE_L2-Hydra 487691 490444 322 - . . scaffold867 GLEAN mRNA 490506 500925 0.812964 - . ID=CGI_10026232; scaffold867 WUBlastX LINE_I 490722 490925 22 - . . scaffold867 TRF Tandem_Repeat 494219 494247 58 + . . scaffold867 WUBlastX LINE_R2 494887 494913 22 + . . scaffold867 WUBlastX LINE_Jockey 495313 495372 20 + . . scaffold867 WUBlastX LINE_L2 496229 496804 100 + . . scaffold867 WUBlastX LINE_RTE-X 496322 496840 269 + . . scaffold867 WUBlastX LINE_RTE-X 496782 497594 184 + . . scaffold867 WUBlastX LINE_RTE-X 497367 497669 22 + . . scaffold867 GLEAN promoter 500926 501925 0.812964 - . ID=CGI_10026232; scaffold867 TRF Tandem_Repeat 501355 501408 90 + . . scaffold867 TRF Tandem_Repeat 513622 513675 76 + . . scaffold867 TRF Tandem_Repeat 513627 513672 76 + . . scaffold867 GLEAN mRNA 517385 523123 0.538043 - . ID=CGI_10026233; scaffold867 TRF Tandem_Repeat 520568 520619 104 + . . scaffold867 GLEAN promoter 523124 524123 0.538043 - . ID=CGI_10026233; scaffold867 TRF Tandem_Repeat 527467 527528 124 + . . scaffold867 GLEAN promoter 533657 534656 1 + . ID=CGI_10026234; scaffold867 GLEAN mRNA 534657 535004 1 + . ID=CGI_10026234; scaffold867 TRF Tandem_Repeat 539060 539129 131 + . . scaffold867 TRF Tandem_Repeat 542308 542343 51 + . . scaffold867 WUBlastX LTR_Ngaro 543047 543766 293 + . . scaffold867 WUBlastX LTR_Ngaro 543779 544219 163 + . . scaffold867 WUBlastX LTR_Ngaro 544360 544632 100 + . . scaffold867 WUBlastX LTR_Ngaro 544420 544629 123 + . . scaffold867 WUBlastX LTR_DIRS 547651 547809 63 + . . scaffold867 WUBlastX LTR_DIRS 547701 549026 376 + . . scaffold867 WUBlastX LTR_DIRS 548371 549513 441 + . . scaffold867 WUBlastX LTR_DIRS 549562 549786 24 + . . scaffold867 WUBlastX LTR_DIRS 549612 550013 123 + . . scaffold867 WUBlastX LTR_DIRS 549684 550001 172 + . . scaffold867 WUBlastX LTR_DIRS 550036 550134 22 + . . scaffold867 WUBlastX DNA_IS4EU 552624 552962 115 + . . scaffold867 WUBlastX DNA_IS4EU 553221 553436 29 - . . scaffold867 WUBlastX DNA_IS4EU 553287 553436 47 - . . scaffold867 WUBlastX DNA_Kolobok-IS4 553376 553684 72 - . . scaffold867 WUBlastX DNA_IS4EU 553397 553741 71 - . . scaffold867 WUBlastX DNA_IS4EU 553412 553672 99 - . . scaffold867 WUBlastX DNA_IS4EU 553734 553913 26 - . . scaffold867 WUBlastX DNA_IS4EU 553908 554441 36 - . . scaffold867 WUBlastX DNA_IS4EU 554522 554635 21 - . . scaffold867 WUBlastX LTR_Gypsy 561697 562230 175 + . . scaffold867 WUBlastX LTR_Gypsy 561733 562332 120 + . . scaffold867 TRF Tandem_Repeat 566972 568751 1435 + . . scaffold867 TRF Tandem_Repeat 585025 585073 98 + . . scaffold867 TRF Tandem_Repeat 591932 591998 71 + . . scaffold867 WUBlastX LTR_Gypsy 597440 597679 29 + . . scaffold867 TRF Tandem_Repeat 602204 602241 51 + . . scaffold867 TRF Tandem_Repeat 602207 602245 55 + . . scaffold867 WUBlastX LTR_Pao 603221 603703 56 + . . scaffold867 WUBlastX LTR_Pao 603320 603808 82 + . . scaffold867 WUBlastX LTR_Pao 603515 603703 88 + . . scaffold867 WUBlastX LTR_Pao 603682 604200 178 + . . scaffold867 TRF Tandem_Repeat 610523 610553 53 + . . scaffold867 WUBlastX LTR_Ngaro 613118 613222 65 - . . scaffold867 WUBlastX LTR_Ngaro 613234 613467 51 - . . scaffold867 WUBlastX LTR_Ngaro 613545 614069 126 - . . scaffold867 WUBlastX LTR_Ngaro 613958 614356 190 - . . scaffold867 WUBlastX LTR_Ngaro 614337 615536 543 - . . scaffold867 WUBlastX LTR_Ngaro 615571 616455 96 - . . scaffold867 WUBlastX LTR_Ngaro 615595 616227 122 - . . scaffold867 WUBlastX LTR_Ngaro 615787 616308 133 - . . scaffold867 WUBlastX LTR_Gypsy 620336 620497 54 + . . scaffold867 WUBlastX LTR_Gypsy 620502 620774 153 + . . scaffold867 WUBlastX LTR_Gypsy 620779 620943 94 + . . scaffold867 WUBlastX LTR_Gypsy 620779 621102 73 + . . scaffold867 WUBlastX LTR_Gypsy 621001 621252 42 + . . scaffold867 WUBlastX LTR_Gypsy 621461 621706 91 + . . scaffold867 WUBlastX LTR_Gypsy 621655 621993 146 + . . scaffold867 WUBlastX LTR_Gypsy 622690 622971 56 + . . scaffold867 WUBlastX LTR_Gypsy 622925 623305 217 + . . scaffold867 WUBlastX LTR_Gypsy 622958 623368 90 + . . scaffold867 WUBlastX LTR_Gypsy 623012 623305 253 + . . scaffold867 WUBlastX LTR_Gypsy 623066 623437 66 + . . scaffold867 GLEAN promoter 623327 624326 0.27804 + . ID=CGI_10026235; scaffold867 GLEAN mRNA 624327 637945 0.27804 + . ID=CGI_10026235; scaffold867 TRF Tandem_Repeat 631786 631833 55 + . . scaffold867 TRF Tandem_Repeat 633549 633723 251 + . . scaffold867 TRF Tandem_Repeat 645141 645316 176 + . . scaffold867 TRF Tandem_Repeat 648255 648308 108 + . . scaffold867 TRF Tandem_Repeat 654773 654798 52 + . . scaffold867 WUBlastX LINE_RTE-X 655133 655306 27 + . . scaffold867 WUBlastX LINE_RTE-X 655172 655690 54 + . . scaffold867 WUBlastX LINE_RTE-X 655639 656001 62 + . . scaffold867 WUBlastX LINE_RTE-X 655720 655932 72 + . . scaffold867 WUBlastX LINE_RTE-X 655720 655893 74 + . . scaffold867 TRF Tandem_Repeat 668963 668999 74 + . . scaffold867 TRF Tandem_Repeat 669172 669228 60 + . . scaffold867 TRF Tandem_Repeat 669189 669228 53 + . . scaffold867 TRF Tandem_Repeat 670184 670503 496 + . . scaffold867 WUBlastX LINE_RTE-X 684145 684789 24 - . . scaffold867 WUBlastX LINE_RTE-X 684181 684681 88 - . . scaffold867 WUBlastX LINE_RTE-X 684262 684684 115 - . . scaffold867 GLEAN mRNA 687928 689061 0.554627 - . ID=CGI_10026236; scaffold867 GLEAN promoter 689062 690061 0.554627 - . ID=CGI_10026236; scaffold867 GLEAN mRNA 692075 694201 0.997787 - . ID=CGI_10026237; scaffold867 GLEAN promoter 694202 695201 0.997787 - . ID=CGI_10026237; scaffold867 TRF Tandem_Repeat 694584 694630 94 + . . scaffold867 GLEAN promoter 700475 701474 0.842548 + . ID=CGI_10026238; scaffold867 GLEAN mRNA 701475 703452 0.842548 + . ID=CGI_10026238; scaffold867 GLEAN mRNA 711454 714684 0.647465 - . ID=CGI_10026239; scaffold867 GLEAN promoter 714685 715684 0.647465 - . ID=CGI_10026239; scaffold867 TRF Tandem_Repeat 728379 728424 92 + . . scaffold867 TRF Tandem_Repeat 729539 729577 69 + . . scaffold867 TRF Tandem_Repeat 746404 746444 75 + . . scaffold867 TRF Tandem_Repeat 756598 756651 108 + . . scaffold867 TRF Tandem_Repeat 756742 756775 68 + . . scaffold867 GLEAN promoter 758170 759169 0.999675 + . ID=CGI_10026240; scaffold867 GLEAN mRNA 759170 778128 0.999675 + . ID=CGI_10026240; scaffold867 TRF Tandem_Repeat 760924 761007 96 + . . scaffold867 TRF Tandem_Repeat 770531 770690 113 + . . scaffold867 TRF Tandem_Repeat 770533 770686 209 + . . scaffold867 TRF Tandem_Repeat 777394 777548 224 + . . scaffold867 TRF Tandem_Repeat 777674 777741 136 + . . scaffold867 TRF Tandem_Repeat 781110 781269 176 + . . scaffold867 TRF Tandem_Repeat 781361 782334 1354 + . . scaffold867 TRF Tandem_Repeat 781361 782334 1354 + . . scaffold867 TRF Tandem_Repeat 781361 782334 1354 + . . scaffold867 TRF Tandem_Repeat 815943 816029 147 + . . scaffold867 WUBlastX LTR_Copia 820076 820129 20 - . . scaffold867 WUBlastX LTR_Gypsy 820608 820640 31 - . . scaffold867 WUBlastX LTR_Gypsy-Cigr 820697 822319 677 - . . scaffold867 WUBlastX LTR_Gypsy-Cigr 820748 822100 819 - . . scaffold867 WUBlastX LTR_Gypsy 822215 822340 103 - . . scaffold867 WUBlastX LTR_Gypsy-Cigr 822342 823757 1244 - . . scaffold867 TRF Tandem_Repeat 823920 823986 89 + . . scaffold867 WUBlastX LTR_Gypsy 859757 859900 50 - . . scaffold867 WUBlastX LTR_Gypsy 859802 859894 51 - . . scaffold867 WUBlastX LTR_Gypsy 859849 860076 69 - . . scaffold867 WUBlastX LTR_Gypsy 859897 860193 58 - . . scaffold867 WUBlastX LTR_Gypsy 859897 860064 78 - . . scaffold867 TRF Tandem_Repeat 866327 866363 74 + . . scaffold867 TRF Tandem_Repeat 873625 874412 1037 + . . scaffold867 TRF Tandem_Repeat 874583 874613 53 + . . scaffold867 GLEAN mRNA 875240 884266 0.955659 - . ID=CGI_10026241; scaffold867 GLEAN promoter 877150 878149 1 + . ID=CGI_10026242; scaffold867 GLEAN mRNA 878150 885941 1 + . ID=CGI_10026242; scaffold867 WUBlastX LTR_Gypsy 883280 883438 31 + . . scaffold867 GLEAN promoter 884267 885266 0.955659 - . ID=CGI_10026241; scaffold867 WUBlastX LTR_Gypsy 884682 884837 32 + . . scaffold867 GLEAN mRNA 886050 906355 0.494912 - . ID=CGI_10026243; scaffold867 TRF Tandem_Repeat 887477 887663 90 + . . scaffold867 TRF Tandem_Repeat 891582 892293 895 + . . scaffold867 GLEAN promoter 897407 898406 0.734077 + . ID=CGI_10026244; scaffold867 GLEAN mRNA 898407 906644 0.734077 + . ID=CGI_10026244; scaffold867 TRF Tandem_Repeat 904274 904309 72 + . . scaffold867 WUBlastX LTR_ERVK 905716 905880 51 + . . scaffold867 WUBlastX LTR_ERVK 906177 906260 31 + . . scaffold867 GLEAN promoter 906356 907355 0.494912 - . ID=CGI_10026243; scaffold867 GLEAN mRNA 912418 918718 0.984907 - . ID=CGI_10026245; scaffold867 TRF Tandem_Repeat 913065 913101 74 + . . scaffold867 GLEAN promoter 918719 919718 0.984907 - . ID=CGI_10026245; scaffold867 GLEAN promoter 921596 922595 0.999998 + . ID=CGI_10026246; scaffold867 GLEAN mRNA 922596 923240 0.999998 + . ID=CGI_10026246; scaffold867 TRF Tandem_Repeat 929997 930296 300 + . . scaffold867 TRF Tandem_Repeat 929997 930325 346 + . . scaffold867 TRF Tandem_Repeat 931767 932623 421 + . . scaffold867 TRF Tandem_Repeat 931767 932618 595 + . . scaffold867 TRF Tandem_Repeat 932638 932762 92 + . . scaffold867 TRF Tandem_Repeat 935593 935619 54 + . . scaffold867 TRF Tandem_Repeat 940356 940396 82 + . . scaffold867 WUBlastX LINE_RTE-X 940581 941486 65 + . . scaffold867 WUBlastX LINE_RTE-X 940751 941704 112 + . . scaffold867 WUBlastX LTR_Gypsy 951839 952060 69 - . . scaffold867 GLEAN mRNA 953403 961880 0.937348 - . ID=CGI_10026247; scaffold867 TRF Tandem_Repeat 958202 958619 291 + . . scaffold867 TRF Tandem_Repeat 958212 958600 390 + . . scaffold867 TRF Tandem_Repeat 958213 958619 211 + . . scaffold867 TRF Tandem_Repeat 958250 958600 305 + . . scaffold867 TRF Tandem_Repeat 959452 959678 180 + . . scaffold867 TRF Tandem_Repeat 959452 959724 287 + . . scaffold867 GLEAN promoter 961881 962880 0.937348 - . ID=CGI_10026247; scaffold867 GLEAN mRNA 966697 968773 0.999539 - . ID=CGI_10026248; scaffold867 GLEAN promoter 968774 969773 0.999539 - . ID=CGI_10026248; scaffold867 GLEAN mRNA 968872 976070 0.361161 - . ID=CGI_10026249; scaffold867 TRF Tandem_Repeat 970634 970842 241 + . . scaffold867 TRF Tandem_Repeat 972816 973023 353 + . . scaffold867 GLEAN promoter 976071 977070 0.361161 - . ID=CGI_10026249; scaffold867 GLEAN mRNA 977842 978039 0.85277 - . ID=CGI_10026250; scaffold867 GLEAN promoter 978040 979039 0.85277 - . ID=CGI_10026250; scaffold867 GLEAN mRNA 978298 981247 0.852149 - . ID=CGI_10026251; scaffold867 TRF Tandem_Repeat 979720 980044 469 + . . scaffold867 TRF Tandem_Repeat 979720 980044 469 + . . scaffold867 TRF Tandem_Repeat 979720 979878 291 + . . scaffold867 TRF Tandem_Repeat 979878 980044 241 + . . scaffold867 GLEAN promoter 981248 982247 0.852149 - . ID=CGI_10026251; scaffold867 GLEAN mRNA 983538 995351 0.996987 - . ID=CGI_10026252; scaffold867 TRF Tandem_Repeat 991563 991596 68 + . . scaffold867 GLEAN promoter 994555 995554 0.999367 + . ID=CGI_10026253; scaffold867 GLEAN promoter 995352 996351 0.996987 - . ID=CGI_10026252; scaffold867 GLEAN mRNA 995555 1003422 0.999367 + . ID=CGI_10026253; scaffold867 TRF Tandem_Repeat 997523 997570 51 + . . scaffold867 TRF Tandem_Repeat 997523 997567 72 + . . scaffold867 TRF Tandem_Repeat 998091 998270 168 + . . scaffold867 GLEAN mRNA 1005633 1007784 0.999999 - . ID=CGI_10026254; scaffold867 GLEAN promoter 1007785 1008784 0.999999 - . ID=CGI_10026254; scaffold867 GLEAN mRNA 1010631 1015173 1 - . ID=CGI_10026255; scaffold867 GLEAN promoter 1015174 1016173 1 - . ID=CGI_10026255; scaffold867 WUBlastX LTR_Pao 1019984 1020136 78 - . . scaffold867 WUBlastX LTR_Pao 1020108 1020470 164 - . . scaffold867 WUBlastX LTR_Pao 1020213 1020512 193 - . . scaffold867 WUBlastX LTR_Pao 1021109 1022854 647 - . . scaffold867 WUBlastX LTR_Pao 1022863 1023084 97 - . . scaffold867 WUBlastX LTR_Pao 1023021 1023389 229 - . . scaffold867 WUBlastX LTR_Pao 1023087 1023374 236 - . . scaffold867 WUBlastX LTR_Pao 1023090 1023560 23 - . . scaffold867 TRF Tandem_Repeat 1025808 1025840 66 + . . scaffold867 GLEAN promoter 1026363 1027362 1 + . ID=CGI_10026256; scaffold867 GLEAN mRNA 1027363 1030718 1 + . ID=CGI_10026256; scaffold867 GLEAN mRNA 1031698 1038734 1 - . ID=CGI_10026257; scaffold867 TRF Tandem_Repeat 1035302 1035349 78 + . . scaffold867 GLEAN promoter 1036240 1037239 0.999132 + . ID=CGI_10026258; scaffold867 TRF Tandem_Repeat 1036968 1036994 54 + . . scaffold867 GLEAN mRNA 1037240 1055522 0.999132 + . ID=CGI_10026258; scaffold867 GLEAN promoter 1038735 1039734 1 - . ID=CGI_10026257; scaffold867 TRF Tandem_Repeat 1039474 1041526 2245 + . . scaffold867 GLEAN mRNA 1045467 1049888 1 - . ID=CGI_10026259; scaffold867 GLEAN promoter 1049889 1050888 1 - . ID=CGI_10026259; scaffold867 TRF Tandem_Repeat 1053620 1054875 1679 + . . scaffold867 GLEAN mRNA 1057405 1070089 0.30835 - . ID=CGI_10026260; scaffold867 WUBlastX LINE_L2 1058485 1058586 32 - . . scaffold867 GLEAN promoter 1070090 1071089 0.30835 - . ID=CGI_10026260; scaffold867 WUBlastX LINE_RTE-X 1075246 1075644 43 + . . scaffold867 WUBlastX LINE_RTE-X 1075403 1075729 58 + . . scaffold867 TRF Tandem_Repeat 1076746 1076784 78 + . . scaffold867 TRF Tandem_Repeat 1078258 1078610 544 + . . scaffold867 TRF Tandem_Repeat 1078258 1078614 532 + . . scaffold867 TRF Tandem_Repeat 1078597 1078626 51 + . . scaffold867 GLEAN promoter 1079718 1080717 1 + . ID=CGI_10026261; scaffold867 GLEAN mRNA 1080718 1089561 1 + . ID=CGI_10026261; scaffold867 TRF Tandem_Repeat 1081354 1081404 102 + . . scaffold867 GLEAN mRNA 1087923 1093532 0.999676 - . ID=CGI_10026262; scaffold867 GLEAN promoter 1093533 1094532 0.999676 - . ID=CGI_10026262; scaffold867 GLEAN mRNA 1122368 1136269 0.61743 - . ID=CGI_10026263; scaffold867 WUBlastX LINE_RTE-BovB 1135664 1135930 115 + . . scaffold867 GLEAN promoter 1136270 1137269 0.61743 - . ID=CGI_10026263; scaffold867 TRF Tandem_Repeat 1136975 1137004 51 + . . scaffold867 GLEAN mRNA 1139043 1141200 1 - . ID=CGI_10026264; scaffold867 TRF Tandem_Repeat 1140144 1140175 64 + . . scaffold867 GLEAN promoter 1141201 1142200 1 - . ID=CGI_10026264; scaffold867 TRF Tandem_Repeat 1144803 1144886 55 + . . scaffold867 GLEAN promoter 1152156 1153155 1 + . ID=CGI_10026265; scaffold867 GLEAN mRNA 1153156 1158719 1 + . ID=CGI_10026265; scaffold867 TRF Tandem_Repeat 1154300 1156224 2357 + . . scaffold868 GLEAN promoter 1 181 0.558382 + . ID=CGI_10006353; scaffold868 GLEAN mRNA 182 21297 0.558382 + . ID=CGI_10006353; scaffold868 TRF Tandem_Repeat 11488 11521 68 + . . scaffold868 TRF Tandem_Repeat 11519 11555 74 + . . scaffold868 TRF Tandem_Repeat 11607 11636 60 + . . scaffold868 WUBlastX DNA_Merlin 28524 29396 405 + . . scaffold868 GLEAN promoter 30528 31527 0.999572 + . ID=CGI_10006354; scaffold868 GLEAN mRNA 31528 33089 0.999572 + . ID=CGI_10006354; scaffold868 TRF Tandem_Repeat 35698 35852 301 + . . scaffold868 WUBlastX DNA_Merlin 37754 38158 79 + . . scaffold868 WUBlastX DNA_Merlin 37862 38584 415 + . . scaffold868 GLEAN promoter 42393 43392 0.999999 + . ID=CGI_10006355; scaffold868 GLEAN mRNA 43393 44954 0.999999 + . ID=CGI_10006355; scaffold868 GLEAN mRNA 47059 51162 0.999797 - . ID=CGI_10006356; scaffold868 TRF Tandem_Repeat 49630 49691 117 + . . scaffold868 GLEAN promoter 51163 52162 0.999797 - . ID=CGI_10006356; scaffold868 TRF Tandem_Repeat 51340 51382 86 + . . scaffold868 GLEAN mRNA 52658 54198 0.999797 - . ID=CGI_10006357; scaffold868 GLEAN promoter 54199 55198 0.999797 - . ID=CGI_10006357; scaffold868 GLEAN mRNA 54309 69888 0.992348 - . ID=CGI_10006358; scaffold868 TRF Tandem_Repeat 58495 59142 888 + . . scaffold868 GLEAN promoter 69889 70888 0.992348 - . ID=CGI_10006358; scaffold868 TRF Tandem_Repeat 74726 75469 971 + . . scaffold868 TRF Tandem_Repeat 74765 75561 789 + . . scaffold868 GLEAN mRNA 80143 112505 0.999096 - . ID=CGI_10006359; scaffold868 TRF Tandem_Repeat 93312 94011 869 + . . scaffold868 TRF Tandem_Repeat 94015 94077 81 + . . scaffold868 TRF Tandem_Repeat 94022 94076 92 + . . scaffold868 TRF Tandem_Repeat 95858 96607 1279 + . . scaffold868 TRF Tandem_Repeat 106993 107575 380 + . . scaffold868 TRF Tandem_Repeat 107057 107552 437 + . . scaffold868 TRF Tandem_Repeat 108142 108233 105 + . . scaffold868 TRF Tandem_Repeat 108592 108631 62 + . . scaffold868 GLEAN promoter 112506 113505 0.999096 - . ID=CGI_10006359; scaffold868 WUBlastX LINE_Penelope 114629 114829 57 - . . scaffold868 WUBlastX LINE_Penelope 114644 114871 33 - . . scaffold868 WUBlastX LINE_Penelope 115040 116467 181 + . . scaffold868 WUBlastX LINE_Penelope 115274 116626 208 + . . scaffold868 WUBlastX LINE_Penelope 115361 116467 404 + . . scaffold868 WUBlastX LINE_Penelope 116466 117167 90 + . . scaffold868 TRF Tandem_Repeat 119042 119859 1161 + . . scaffold868 TRF Tandem_Repeat 132394 132429 63 + . . scaffold868 WUBlastX DNA_TcMar-Tc1 138834 139157 38 + . . scaffold868 WUBlastX DNA_TcMar-Tc1 138873 139145 58 + . . scaffold868 WUBlastX DNA_TcMar-Tc1 139166 139819 280 + . . scaffold868 WUBlastX DNA_Kolobok 147383 147472 21 + . . scaffold868 WUBlastX DNA_Kolobok 147610 147804 93 + . . scaffold868 WUBlastX LTR_Gypsy-Cigr 148503 148682 98 - . . scaffold868 WUBlastX LTR_Gypsy-Cigr 148539 148679 149 - . . scaffold868 WUBlastX LTR_Gypsy 148551 148751 87 - . . scaffold87 TRF Tandem_Repeat 5337 5526 176 + . . scaffold87 TRF Tandem_Repeat 5577 5708 90 + . . scaffold87 WUBlastX LTR_Pao 16986 17723 333 + . . scaffold87 WUBlastX LTR_Pao 17708 18934 299 + . . scaffold87 WUBlastX LTR_Pao 18932 19234 221 + . . scaffold87 WUBlastX LTR_Pao 18932 19294 184 + . . scaffold87 WUBlastX LINE_RTE-X 27199 27258 21 + . . scaffold87 WUBlastX LINE_RTE-X 27266 27511 140 + . . scaffold87 GLEAN promoter 32011 33010 0.999999 + . ID=CGI_10006307; scaffold87 GLEAN mRNA 33011 34840 0.999999 + . ID=CGI_10006307; scaffold87 GLEAN promoter 33857 34856 0.999934 + . ID=CGI_10006308; scaffold87 GLEAN mRNA 34857 35072 0.999934 + . ID=CGI_10006308; scaffold87 WUBlastX LINE_CR1-L2 41228 41563 37 - . . scaffold87 WUBlastX LINE_Tad1? 41297 41500 40 - . . scaffold87 TRF Tandem_Repeat 45234 45272 60 + . . scaffold87 WUBlastX LINE_RTE-X 47152 47571 20 + . . scaffold87 WUBlastX LINE_RTE-X 47170 47418 122 + . . scaffold87 WUBlastX LINE_CR1 48962 49033 20 + . . scaffold87 WUBlastX LINE_CR1 49593 49808 30 + . . scaffold87 WUBlastX LINE_CR1 49695 49787 33 + . . scaffold87 WUBlastX LINE_CR1 49716 49793 52 + . . scaffold87 WUBlastX LINE_L2 49801 50151 63 + . . scaffold87 WUBlastX LINE_CR1 49873 50181 213 + . . scaffold87 WUBlastX LINE_CR1 50184 50336 78 + . . scaffold87 WUBlastX LINE_CR1 50187 50366 30 + . . scaffold87 TRF Tandem_Repeat 52215 52405 289 + . . scaffold87 TRF Tandem_Repeat 58426 58519 98 + . . scaffold87 TRF Tandem_Repeat 93693 93741 71 + . . scaffold87 TRF Tandem_Repeat 99056 99097 59 + . . scaffold87 TRF Tandem_Repeat 99830 99879 82 + . . scaffold87 WUBlastX LINE_L1-Tx1 99929 103570 1836 - . . scaffold87 WUBlastX LINE_L1 103554 103658 50 - . . scaffold87 WUBlastX LINE_L1-Tx1 103554 103679 37 - . . scaffold87 WUBlastX LINE_L2 103977 104471 55 - . . scaffold87 WUBlastX LINE_L2 104040 104390 85 - . . scaffold87 GLEAN promoter 104045 105044 1 + . ID=CGI_10006309; scaffold87 GLEAN mRNA 105045 106194 1 + . ID=CGI_10006309; scaffold87 TRF Tandem_Repeat 107898 108300 402 + . . scaffold87 TRF Tandem_Repeat 107900 108284 474 + . . scaffold87 TRF Tandem_Repeat 111076 111484 461 + . . scaffold87 TRF Tandem_Repeat 111076 111484 439 + . . scaffold87 TRF Tandem_Repeat 111076 111484 340 + . . scaffold87 WUBlastX DNA_Sola 112896 113159 109 - . . scaffold87 WUBlastX DNA_Sola 113338 113580 61 - . . scaffold87 WUBlastX DNA_Sola 113520 114509 356 - . . scaffold87 WUBlastX DNA_Sola 114294 114686 46 - . . scaffold87 TRF Tandem_Repeat 114960 114990 53 + . . scaffold87 WUBlastX LTR_Gypsy 118164 119003 242 + . . scaffold87 WUBlastX LTR_Gypsy 118287 118949 427 + . . scaffold87 WUBlastX LTR_Gypsy 118996 120039 705 + . . scaffold87 WUBlastX LTR_Gypsy 119904 120995 864 + . . scaffold87 WUBlastX LTR_Gypsy 120021 121892 432 + . . scaffold87 WUBlastX LTR_Gypsy 121885 122241 83 + . . scaffold87 WUBlastX LTR_Ngaro 125674 126075 148 + . . scaffold87 WUBlastX LTR_Ngaro 126075 126245 60 + . . scaffold87 WUBlastX LTR_Gypsy 129134 129667 259 - . . scaffold87 WUBlastX LTR_Gypsy 129242 129763 224 - . . scaffold87 WUBlastX LTR_Gypsy 129242 129676 344 - . . scaffold87 WUBlastX LTR_Gypsy-Gmr1 129645 129938 199 - . . scaffold87 WUBlastX LTR_Gypsy 130824 131378 260 - . . scaffold87 WUBlastX LTR_Gypsy 130944 131378 345 - . . scaffold87 WUBlastX LTR_Gypsy 131311 133029 1161 - . . scaffold87 WUBlastX LTR_Gypsy 132670 133158 92 - . . scaffold87 WUBlastX LTR_Gypsy 132799 133071 116 - . . scaffold87 WUBlastX LTR_Gypsy 133468 134022 122 - . . scaffold87 WUBlastX LTR_Gypsy 133588 135258 320 - . . scaffold87 WUBlastX LTR_Gypsy 134491 135636 209 - . . scaffold87 WUBlastX LTR_Gypsy 134545 135432 237 - . . scaffold87 TRF Tandem_Repeat 138186 138237 77 + . . scaffold87 TRF Tandem_Repeat 140890 140939 100 + . . scaffold87 WUBlastX LINE_L1-Tx1 142799 143392 73 - . . scaffold87 GLEAN promoter 145845 146844 0.999856 + . ID=CGI_10006310; scaffold87 GLEAN mRNA 146845 147693 0.999856 + . ID=CGI_10006310; scaffold870 GLEAN mRNA 42 7594 0.605963 - . ID=CGI_10007489; scaffold870 GLEAN promoter 7595 8594 0.605963 - . ID=CGI_10007489; scaffold870 TRF Tandem_Repeat 8704 8738 70 + . . scaffold870 GLEAN mRNA 8942 14275 0.961547 - . ID=CGI_10007490; scaffold870 GLEAN promoter 14276 15275 0.961547 - . ID=CGI_10007490; scaffold870 GLEAN promoter 18153 19152 1 + . ID=CGI_10007491; scaffold870 GLEAN mRNA 19153 28260 1 + . ID=CGI_10007491; scaffold870 GLEAN promoter 29759 30758 0.980601 + . ID=CGI_10007492; scaffold870 GLEAN mRNA 30759 42352 0.980601 + . ID=CGI_10007492; scaffold870 GLEAN promoter 43819 44818 0.999949 + . ID=CGI_10007493; scaffold870 GLEAN mRNA 44819 52818 0.999949 + . ID=CGI_10007493; scaffold870 WUBlastX DNA_hAT 47456 47710 102 + . . scaffold870 WUBlastX DNA_hAT 47739 47879 61 + . . scaffold870 WUBlastX DNA_hAT 48117 48317 143 + . . scaffold870 WUBlastX DNA_hAT 48506 48700 57 + . . scaffold870 WUBlastX DNA_hAT 48777 48923 73 + . . scaffold870 WUBlastX DNA_hAT 48885 49019 20 + . . scaffold870 WUBlastX DNA_hAT 49117 49275 38 + . . scaffold870 WUBlastX DNA_hAT 49162 49272 46 + . . scaffold870 TRF Tandem_Repeat 49379 49433 110 + . . scaffold870 WUBlastX DNA_hAT 49590 49703 79 + . . scaffold870 WUBlastX DNA_hAT 49901 50056 52 + . . scaffold870 WUBlastX DNA_hAT 52423 52791 195 + . . scaffold870 GLEAN mRNA 54495 56706 0.955684 - . ID=CGI_10007494; scaffold870 GLEAN promoter 56707 57706 0.955684 - . ID=CGI_10007494; scaffold870 GLEAN mRNA 56917 76381 0.55432 - . ID=CGI_10007495; scaffold870 GLEAN promoter 76382 77381 0.55432 - . ID=CGI_10007495; scaffold870 TRF Tandem_Repeat 85536 85589 85 + . . scaffold870 TRF Tandem_Repeat 85536 85589 58 + . . scaffold870 TRF Tandem_Repeat 85539 85584 67 + . . scaffold870 TRF Tandem_Repeat 94906 95416 693 + . . scaffold870 TRF Tandem_Repeat 127217 127279 55 + . . scaffold870 WUBlastX LINE_RTE-X 129889 130077 45 - . . scaffold870 GLEAN promoter 138854 139853 0.423462 + . ID=CGI_10007496; scaffold870 GLEAN mRNA 139854 163294 0.423462 + . ID=CGI_10007496; scaffold870 WUBlastX LTR_Gypsy 140458 141402 223 - . . scaffold870 WUBlastX LTR_Gypsy 140599 141330 267 - . . scaffold870 TRF Tandem_Repeat 149909 149933 50 + . . scaffold870 TRF Tandem_Repeat 154250 154303 76 + . . scaffold870 TRF Tandem_Repeat 154255 154300 76 + . . scaffold870 TRF Tandem_Repeat 155651 155694 88 + . . scaffold870 TRF Tandem_Repeat 160754 160800 94 + . . scaffold870 TRF Tandem_Repeat 162876 162931 112 + . . scaffold870 TRF Tandem_Repeat 163425 163748 486 + . . scaffold870 GLEAN promoter 163797 164796 1 + . ID=CGI_10007497; scaffold870 GLEAN mRNA 164797 172642 1 + . ID=CGI_10007497; scaffold870 GLEAN promoter 172722 173721 1 + . ID=CGI_10007498; scaffold870 GLEAN mRNA 173722 176479 1 + . ID=CGI_10007498; scaffold870 GLEAN mRNA 176217 182493 1 - . ID=CGI_10007499; scaffold870 GLEAN promoter 182494 182500 1 - . ID=CGI_10007499; scaffold872 GLEAN mRNA 3305 11919 0.716009 - . ID=CGI_10001653; scaffold872 GLEAN promoter 11920 12919 0.716009 - . ID=CGI_10001653; scaffold872 GLEAN mRNA 21425 27673 1 - . ID=CGI_10001654; scaffold872 GLEAN promoter 27674 28673 1 - . ID=CGI_10001654; scaffold873 GLEAN mRNA 187 12006 1 - . ID=CGI_10014412; scaffold873 GLEAN promoter 2320 3319 0.610669 + . ID=CGI_10014413; scaffold873 GLEAN mRNA 3320 22620 0.610669 + . ID=CGI_10014413; scaffold873 TRF Tandem_Repeat 6689 6800 163 + . . scaffold873 GLEAN promoter 12007 13006 1 - . ID=CGI_10014412; scaffold873 WUBlastX LINE_CR1-L2 23100 23303 59 - . . scaffold873 WUBlastX LINE_L2 23139 23336 107 - . . scaffold873 GLEAN promoter 23978 24977 1 + . ID=CGI_10014414; scaffold873 GLEAN mRNA 24978 30011 1 + . ID=CGI_10014414; scaffold873 TRF Tandem_Repeat 28783 28916 148 + . . scaffold873 TRF Tandem_Repeat 28794 28917 137 + . . scaffold873 TRF Tandem_Repeat 30311 30364 108 + . . scaffold873 WUBlastX LTR_DIRS 33878 34783 551 - . . scaffold873 GLEAN mRNA 45064 50660 1 - . ID=CGI_10014415; scaffold873 GLEAN promoter 50661 51660 1 - . ID=CGI_10014415; scaffold873 GLEAN mRNA 56669 81028 0.874889 - . ID=CGI_10014416; scaffold873 GLEAN promoter 81029 82028 0.874889 - . ID=CGI_10014416; scaffold873 TRF Tandem_Repeat 83940 83986 94 + . . scaffold873 TRF Tandem_Repeat 88174 88233 120 + . . scaffold873 TRF Tandem_Repeat 94707 94754 87 + . . scaffold873 TRF Tandem_Repeat 99467 99495 58 + . . scaffold873 TRF Tandem_Repeat 101216 101266 102 + . . scaffold873 GLEAN promoter 117552 118551 0.999675 + . ID=CGI_10014417; scaffold873 GLEAN mRNA 118552 131314 0.999675 + . ID=CGI_10014417; scaffold873 GLEAN mRNA 119629 120280 1 - . ID=CGI_10014418; scaffold873 GLEAN promoter 120281 121280 1 - . ID=CGI_10014418; scaffold873 TRF Tandem_Repeat 120948 121034 79 + . . scaffold873 TRF Tandem_Repeat 121064 121222 135 + . . scaffold873 TRF Tandem_Repeat 121222 121387 167 + . . scaffold873 TRF Tandem_Repeat 129849 129884 72 + . . scaffold873 GLEAN promoter 132437 133436 0.999768 + . ID=CGI_10014419; scaffold873 TRF Tandem_Repeat 132906 133076 139 + . . scaffold873 TRF Tandem_Repeat 132906 133016 150 + . . scaffold873 GLEAN mRNA 133437 145893 0.999768 + . ID=CGI_10014419; scaffold873 TRF Tandem_Repeat 136241 136465 124 + . . scaffold873 TRF Tandem_Repeat 136745 136848 100 + . . scaffold873 TRF Tandem_Repeat 137152 137280 100 + . . scaffold873 TRF Tandem_Repeat 144374 144424 102 + . . scaffold873 GLEAN promoter 150861 151860 0.999922 + . ID=CGI_10014420; scaffold873 GLEAN mRNA 151861 154677 0.999922 + . ID=CGI_10014420; scaffold873 WUBlastX LINE_Penelope 159892 160170 116 - . . scaffold873 WUBlastX LINE_Penelope 159910 160218 53 - . . scaffold873 WUBlastX LINE_Penelope 160220 160372 70 - . . scaffold873 WUBlastX LINE_Penelope 160482 160613 63 + . . scaffold873 TRF Tandem_Repeat 172547 172614 93 + . . scaffold873 WUBlastX DNA_Maverick 174978 175145 23 + . . scaffold873 WUBlastX DNA_Maverick 175051 175221 25 + . . scaffold873 WUBlastX DNA_Maverick 175051 175188 41 + . . scaffold873 WUBlastX DNA_Maverick 175236 175598 101 + . . scaffold873 WUBlastX DNA_Maverick 175646 176086 72 + . . scaffold873 WUBlastX DNA_Maverick 175739 176086 99 + . . scaffold873 WUBlastX DNA_Maverick 178373 178540 23 + . . scaffold873 WUBlastX DNA_Maverick 178446 178583 32 + . . scaffold873 WUBlastX DNA_Maverick 178631 178993 100 + . . scaffold873 WUBlastX DNA_Maverick 179041 179481 61 + . . scaffold873 WUBlastX DNA_Maverick 179134 179481 92 + . . scaffold873 WUBlastX DNA_Maverick 179454 179651 60 + . . scaffold873 WUBlastX DNA_Maverick 179571 179714 23 + . . scaffold873 WUBlastX DNA_Maverick 179885 180427 121 + . . scaffold873 WUBlastX DNA_Maverick 181211 181801 62 - . . scaffold873 WUBlastX DNA_Maverick 181373 181786 83 - . . scaffold873 WUBlastX DNA_Maverick 181574 181801 94 - . . scaffold873 GLEAN promoter 182149 183148 0.999752 + . ID=CGI_10014421; scaffold873 GLEAN mRNA 183149 186873 0.999752 + . ID=CGI_10014421; scaffold873 TRF Tandem_Repeat 183357 183395 71 + . . scaffold873 GLEAN mRNA 206478 208037 0.523198 - . ID=CGI_10014422; scaffold873 GLEAN promoter 208038 209037 0.523198 - . ID=CGI_10014422; scaffold873 WUBlastX LINE_RTE-X 211642 212292 178 - . . scaffold873 WUBlastX LINE_L1 212520 212888 200 - . . scaffold873 WUBlastX LINE_L1 212523 213149 157 - . . scaffold873 TRF Tandem_Repeat 218060 218094 52 + . . scaffold873 TRF Tandem_Repeat 218099 218896 987 + . . scaffold873 WUBlastX DNA_Harbinger 221107 221412 108 - . . scaffold873 WUBlastX DNA_Harbinger 221239 221490 62 - . . scaffold873 WUBlastX DNA_Harbinger 221757 221876 63 - . . scaffold873 WUBlastX DNA_Harbinger 221973 222149 75 - . . scaffold873 WUBlastX DNA_Harbinger 222030 222143 130 - . . scaffold873 GLEAN promoter 223606 224605 0.773064 + . ID=CGI_10014423; scaffold873 WUBlastX DNA_Harbinger 223924 224325 165 - . . scaffold873 GLEAN mRNA 224606 225308 0.773064 + . ID=CGI_10014423; scaffold873 TRF Tandem_Repeat 227715 227770 67 + . . scaffold873 TRF Tandem_Repeat 229084 229139 67 + . . scaffold873 GLEAN promoter 229650 230649 0.99998 + . ID=CGI_10014424; scaffold873 GLEAN mRNA 230650 233202 0.99998 + . ID=CGI_10014424; scaffold873 WUBlastX DNA_Harbinger 231620 231802 56 + . . scaffold873 WUBlastX DNA_Harbinger 233277 233474 61 - . . scaffold873 WUBlastX DNA_Harbinger 233614 233811 111 - . . scaffold873 WUBlastX DNA_Harbinger 233847 233984 21 - . . scaffold873 WUBlastX DNA_Harbinger 233874 234014 57 - . . scaffold873 WUBlastX DNA_Harbinger 233904 233984 59 - . . scaffold873 WUBlastX DNA_Harbinger 234130 234279 24 - . . scaffold873 WUBlastX DNA_Harbinger 234163 234312 56 - . . scaffold873 WUBlastX DNA_Harbinger 234163 234285 82 - . . scaffold873 WUBlastX DNA_Harbinger 234861 235106 57 + . . scaffold873 WUBlastX DNA_Harbinger 235574 235987 65 - . . scaffold873 TRF Tandem_Repeat 262389 262455 89 + . . scaffold873 TRF Tandem_Repeat 265299 265365 80 + . . scaffold873 GLEAN promoter 274630 275629 0.99935 + . ID=CGI_10014425; scaffold873 GLEAN mRNA 275630 287328 0.99935 + . ID=CGI_10014425; scaffold873 TRF Tandem_Repeat 277915 277984 61 + . . scaffold873 TRF Tandem_Repeat 277924 277992 54 + . . scaffold873 GLEAN promoter 288694 289693 0.999371 + . ID=CGI_10014426; scaffold873 GLEAN promoter 289095 290094 0.999999 + . ID=CGI_10014427; scaffold873 GLEAN mRNA 289694 290008 0.999371 + . ID=CGI_10014426; scaffold873 GLEAN mRNA 290095 294127 0.999999 + . ID=CGI_10014427; scaffold873 GLEAN mRNA 294174 300489 0.650453 - . ID=CGI_10014428; scaffold873 GLEAN promoter 300490 301489 0.650453 - . ID=CGI_10014428; scaffold873 GLEAN promoter 302329 303328 0.584292 + . ID=CGI_10014429; scaffold873 GLEAN mRNA 303329 307339 0.584292 + . ID=CGI_10014429; scaffold873 TRF Tandem_Repeat 304742 304788 94 + . . scaffold873 GLEAN promoter 307028 308027 0.974222 + . ID=CGI_10014430; scaffold873 GLEAN mRNA 308028 313878 0.974222 + . ID=CGI_10014430; scaffold873 TRF Tandem_Repeat 311517 311786 400 + . . scaffold873 TRF Tandem_Repeat 311850 311961 103 + . . scaffold873 TRF Tandem_Repeat 319539 319621 157 + . . scaffold873 GLEAN promoter 320767 321766 0.99919 + . ID=CGI_10014431; scaffold873 GLEAN mRNA 321767 323080 0.99919 + . ID=CGI_10014431; scaffold873 GLEAN promoter 325383 326382 0.999984 + . ID=CGI_10014432; scaffold873 GLEAN mRNA 326383 330163 0.999984 + . ID=CGI_10014432; scaffold873 TRF Tandem_Repeat 328551 328705 154 + . . scaffold873 GLEAN mRNA 332902 334455 0.616403 - . ID=CGI_10014434; scaffold873 GLEAN promoter 334456 335455 0.616403 - . ID=CGI_10014434; scaffold873 GLEAN mRNA 338697 342978 0.896685 - . ID=CGI_10014435; scaffold873 GLEAN promoter 342979 343978 0.896685 - . ID=CGI_10014435; scaffold873 GLEAN promoter 347022 348021 1 + . ID=CGI_10014436; scaffold873 GLEAN mRNA 348022 352718 1 + . ID=CGI_10014436; scaffold873 TRF Tandem_Repeat 354252 354580 403 + . . scaffold873 TRF Tandem_Repeat 356142 356312 217 + . . scaffold873 TRF Tandem_Repeat 356158 356360 178 + . . scaffold873 TRF Tandem_Repeat 356937 357091 175 + . . scaffold873 TRF Tandem_Repeat 358233 358294 124 + . . scaffold873 TRF Tandem_Repeat 358517 358564 96 + . . scaffold873 GLEAN mRNA 359504 361751 1 - . ID=CGI_10014437; scaffold873 GLEAN promoter 361752 362751 1 - . ID=CGI_10014437; scaffold873 WUBlastX LINE_RTE-X 365124 365279 73 - . . scaffold873 WUBlastX LINE_RTE-X 365314 365394 38 - . . scaffold873 WUBlastX LINE_RTE-X 368959 369414 49 - . . scaffold873 WUBlastX LINE_I-Nimb 369037 369507 21 - . . scaffold873 GLEAN promoter 369257 370256 0.461608 + . ID=CGI_10014438; scaffold873 WUBlastX LINE_Proto2 370094 370381 77 - . . scaffold873 GLEAN mRNA 370257 378125 0.461608 + . ID=CGI_10014438; scaffold873 GLEAN promoter 378813 379812 0.699503 + . ID=CGI_10014439; scaffold873 GLEAN mRNA 379813 382773 0.699503 + . ID=CGI_10014439; scaffold873 TRF Tandem_Repeat 382128 382327 219 + . . scaffold873 GLEAN mRNA 385765 401174 0.65096 - . ID=CGI_10014440; scaffold873 TRF Tandem_Repeat 387632 387667 72 + . . scaffold873 GLEAN promoter 401175 401272 0.65096 - . ID=CGI_10014440; scaffold874 WUBlastX DNA_Harbinger 35 304 109 + . . scaffold874 WUBlastX LINE_L1-Tx1 2707 3660 164 + . . scaffold874 WUBlastX LINE_L1 2821 3627 332 + . . scaffold874 WUBlastX LINE_Jockey 4529 4591 22 + . . scaffold874 WUBlastX LINE_L1 5001 6272 812 + . . scaffold874 TRF Tandem_Repeat 11333 11455 185 + . . scaffold874 TRF Tandem_Repeat 11498 11534 74 + . . scaffold874 TRF Tandem_Repeat 12896 12939 88 + . . scaffold874 TRF Tandem_Repeat 13530 13591 115 + . . scaffold874 TRF Tandem_Repeat 19471 19557 129 + . . scaffold874 TRF Tandem_Repeat 19471 19557 129 + . . scaffold874 TRF Tandem_Repeat 19471 19557 129 + . . scaffold874 TRF Tandem_Repeat 21188 21243 94 + . . scaffold874 TRF Tandem_Repeat 22582 22621 80 + . . scaffold874 TRF Tandem_Repeat 22983 23025 70 + . . scaffold874 TRF Tandem_Repeat 23076 23112 51 + . . scaffold874 TRF Tandem_Repeat 23240 23275 72 + . . scaffold874 TRF Tandem_Repeat 23330 23376 94 + . . scaffold874 TRF Tandem_Repeat 23436 23464 58 + . . scaffold874 GLEAN promoter 23523 24522 0.99887 + . ID=CGI_10001710; scaffold874 TRF Tandem_Repeat 23635 23694 66 + . . scaffold874 TRF Tandem_Repeat 24278 24310 50 + . . scaffold874 GLEAN mRNA 24523 27105 0.99887 + . ID=CGI_10001710; scaffold875 GLEAN mRNA 2246 3193 1 - . ID=CGI_10000662; scaffold875 GLEAN promoter 3194 4193 1 - . ID=CGI_10000662; scaffold876 GLEAN mRNA 1705 6352 0.9995 - . ID=CGI_10002327; scaffold876 GLEAN promoter 6353 7352 0.9995 - . ID=CGI_10002327; scaffold876 GLEAN mRNA 28088 37628 0.999395 - . ID=CGI_10002328; scaffold876 GLEAN promoter 37629 38628 0.999395 - . ID=CGI_10002328; scaffold876 GLEAN mRNA 37658 39553 1 - . ID=CGI_10002329; scaffold876 GLEAN promoter 39554 40553 1 - . ID=CGI_10002329; scaffold878 TRF Tandem_Repeat 2450 2493 88 + . . scaffold878 TRF Tandem_Repeat 7252 7292 82 + . . scaffold878 WUBlastX LINE_L1 10098 10178 24 + . . scaffold878 WUBlastX LINE_L1-Tx1 10162 10872 391 + . . scaffold878 WUBlastX DNA_TcMar-Tc1 38146 38625 253 + . . scaffold878 WUBlastX LINE_L1 42871 43101 70 - . . scaffold878 WUBlastX LINE_L1-Tx1 42946 43116 83 - . . scaffold879 WUBlastX LINE_RTE-BovB 3 161 81 + . . scaffold879 TRF Tandem_Repeat 31967 32005 78 + . . scaffold879 TRF Tandem_Repeat 32341 32382 84 + . . scaffold879 TRF Tandem_Repeat 66629 66682 108 + . . scaffold879 GLEAN mRNA 83884 129121 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 84182 84211 51 + . . scaffold879 WUBlastX LINE_RTE-BovB 95470 97410 1677 + . . scaffold879 TRF Tandem_Repeat 101305 101359 110 + . . scaffold879 TRF Tandem_Repeat 107028 107058 62 + . . scaffold879 TRF Tandem_Repeat 107914 107975 72 + . . scaffold879 TRF Tandem_Repeat 107917 107974 64 + . . scaffold879 TRF Tandem_Repeat 116716 116774 118 + . . scaffold879 TRF Tandem_Repeat 123108 123161 99 + . . scaffold879 TRF Tandem_Repeat 124665 124732 127 + . . scaffold879 GLEAN promoter 129122 130121 0.946613 - . ID=CGI_10007573; scaffold879 TRF Tandem_Repeat 132139 132203 130 + . . scaffold879 TRF Tandem_Repeat 157083 157189 133 + . . scaffold879 TRF Tandem_Repeat 158627 158754 103 + . . scaffold879 TRF Tandem_Repeat 158682 158772 137 + . . scaffold879 TRF Tandem_Repeat 162138 162198 104 + . . scaffold879 WUBlastX LINE_L1-Tx1 162236 162730 26 - . . scaffold879 WUBlastX LINE_L1-Tx1 162455 162799 69 - . . scaffold879 WUBlastX LINE_L1-Tx1 162518 162814 74 - . . scaffold879 WUBlastX LINE_RTE-RTE 162816 162920 22 - . . scaffold879 WUBlastX LINE_L1 162873 162983 23 - . . scaffold879 WUBlastX LINE_L1-Tx1 163050 163496 86 - . . scaffold879 WUBlastX LINE_L1-Tx1 163128 164582 363 - . . scaffold879 WUBlastX LINE_L1-Tx1 164590 164823 35 - . . scaffold879 WUBlastX LINE_L1-Tx1 164626 164982 93 - . . scaffold879 WUBlastX LINE_L1-Tx1 165011 165226 79 - . . scaffold879 WUBlastX LINE_L1-Tx1 165126 165695 95 - . . scaffold879 WUBlastX LINE_L1-Tx1 165222 165665 245 - . . scaffold879 WUBlastX LINE_L1 165225 165788 122 - . . scaffold879 WUBlastX LINE_L1-Tx1 165715 165864 29 - . . scaffold879 WUBlastX LINE_L1 165718 165828 33 - . . scaffold879 TRF Tandem_Repeat 166476 166519 54 + . . scaffold879 WUBlastX LINE_L2 169020 169088 22 + . . scaffold879 WUBlastX LINE_I 169489 170283 25 + . . scaffold879 WUBlastX LINE_RTE-X 169591 170265 262 + . . scaffold879 GLEAN mRNA 171482 181681 0.978552 - . ID=CGI_10007574; scaffold879 GLEAN promoter 181682 182681 0.978552 - . ID=CGI_10007574; scaffold88 GLEAN mRNA 287 2307 1 - . ID=CGI_10011113; scaffold88 GLEAN promoter 2308 3307 1 - . ID=CGI_10011113; scaffold88 GLEAN promoter 4569 5568 0.394344 + . ID=CGI_10011114; scaffold88 GLEAN mRNA 5569 27373 0.394344 + . ID=CGI_10011114; scaffold88 WUBlastX DNA_hAT-Tip100 5569 5904 39 + . . scaffold88 WUBlastX DNA_hAT-Tip100 5647 5862 56 + . . scaffold88 WUBlastX DNA_hAT-Tip100 5650 5964 53 + . . scaffold88 WUBlastX DNA_hAT-Tip100 5680 5856 58 + . . scaffold88 WUBlastX DNA_hAT-Tip100 6003 6401 101 + . . scaffold88 WUBlastX DNA_hAT-Tip100 6380 6748 113 + . . scaffold88 WUBlastX DNA_hAT-Tip100 7832 7924 30 + . . scaffold88 WUBlastX DNA_hAT-Tip100 8050 8151 28 + . . scaffold88 TRF Tandem_Repeat 8381 8514 223 + . . scaffold88 TRF Tandem_Repeat 17351 17387 74 + . . scaffold88 WUBlastX DNA_TcMar-Tc1 18330 19220 388 - . . scaffold88 WUBlastX DNA_TcMar-Marin 19238 19399 35 - . . scaffold88 WUBlastX DNA_TcMar-Tc1 19238 19369 37 - . . scaffold88 GLEAN mRNA 22316 33699 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_L1 23073 23507 32 - . . scaffold88 WUBlastX LINE_L1-Tx1 23145 23516 51 - . . scaffold88 WUBlastX LINE_L1-Tx1 23524 24081 36 - . . scaffold88 WUBlastX LINE_L1-Tx1 24134 24529 143 - . . scaffold88 WUBlastX LINE_L1 25372 26298 307 - . . scaffold88 WUBlastX LINE_L1 25561 26424 579 - . . scaffold88 WUBlastX LINE_L1 26382 26696 63 - . . scaffold88 WUBlastX LINE_L1 26382 26603 87 - . . scaffold88 GLEAN promoter 33700 34699 0.444301 - . ID=CGI_10011115; scaffold88 WUBlastX LINE_CR1-L2 44593 44670 20 - . . scaffold88 WUBlastX LINE_CR1 44605 44670 23 - . . scaffold88 WUBlastX LINE_L2 44706 44813 20 - . . scaffold88 WUBlastX LINE_L2 44903 45430 95 - . . scaffold88 WUBlastX LINE_CR1 45092 45457 145 - . . scaffold88 WUBlastX LINE_CR1-L2 45140 45430 195 - . . scaffold88 WUBlastX LINE_CR1-L2 45155 46459 94 - . . scaffold88 WUBlastX LINE_L2 45197 45526 114 - . . scaffold88 TRF Tandem_Repeat 45983 46019 58 + . . scaffold88 WUBlastX LINE_L2 46551 47006 27 - . . scaffold88 WUBlastX LINE_L2 46644 47024 86 - . . scaffold88 WUBlastX LINE_L2 46695 47099 63 - . . scaffold88 WUBlastX LINE_L2 46695 47012 127 - . . scaffold88 WUBlastX LINE_CR1-L2 48011 48349 68 - . . scaffold88 GLEAN promoter 49495 50494 0.538404 + . ID=CGI_10011116; scaffold88 GLEAN mRNA 50495 53495 0.538404 + . ID=CGI_10011116; scaffold88 GLEAN mRNA 54434 57470 1 - . ID=CGI_10011117; scaffold88 GLEAN promoter 57471 58470 1 - . ID=CGI_10011117; scaffold88 GLEAN mRNA 110533 112187 1 - . ID=CGI_10011118; scaffold88 TRF Tandem_Repeat 111394 111438 90 + . . scaffold88 GLEAN promoter 112188 113187 1 - . ID=CGI_10011118; scaffold88 GLEAN mRNA 114600 121144 1 - . ID=CGI_10011119; scaffold88 TRF Tandem_Repeat 115341 115529 141 + . . scaffold88 GLEAN promoter 121145 122144 1 - . ID=CGI_10011119; scaffold88 GLEAN mRNA 127511 128544 1 - . ID=CGI_10011120; scaffold88 GLEAN promoter 128545 129544 1 - . ID=CGI_10011120; scaffold88 GLEAN mRNA 131262 136206 0.998816 - . ID=CGI_10011121; scaffold88 GLEAN promoter 136207 137206 0.998816 - . ID=CGI_10011121; scaffold88 TRF Tandem_Repeat 137975 138091 71 + . . scaffold88 TRF Tandem_Repeat 138090 138167 63 + . . scaffold88 TRF Tandem_Repeat 138267 138344 52 + . . scaffold88 TRF Tandem_Repeat 139204 139965 986 + . . scaffold88 TRF Tandem_Repeat 147749 147853 85 + . . scaffold88 TRF Tandem_Repeat 149029 149099 74 + . . scaffold88 TRF Tandem_Repeat 149928 150014 76 + . . scaffold88 TRF Tandem_Repeat 156292 156351 75 + . . scaffold88 TRF Tandem_Repeat 156301 156360 84 + . . scaffold88 TRF Tandem_Repeat 186805 186871 89 + . . scaffold88 WUBlastX DNA_MuDR 195302 195562 39 + . . scaffold88 WUBlastX DNA_MuDR 195846 196187 132 + . . scaffold88 TRF Tandem_Repeat 205949 205986 76 + . . scaffold88 WUBlastX LINE_CR1-L2 212043 212141 31 - . . scaffold88 WUBlastX LINE_CR1 213332 213502 40 - . . scaffold88 WUBlastX LINE_CR1 213731 213868 45 - . . scaffold88 WUBlastX LTR_Gypsy 213809 214030 33 - . . scaffold88 WUBlastX LTR_Gypsy 213926 214054 36 - . . scaffold88 WUBlastX LTR_Gypsy 213951 214247 85 - . . scaffold88 WUBlastX LTR_Gypsy 214023 214247 137 - . . scaffold88 WUBlastX LTR_Gypsy 214216 214326 37 - . . scaffold88 WUBlastX LTR_Gypsy 214240 214359 27 - . . scaffold88 WUBlastX LINE_RTE-X 218555 218845 73 - . . scaffold88 WUBlastX LTR_Gypsy 221674 221802 99 - . . scaffold88 WUBlastX LTR_Gypsy 221807 222262 237 - . . scaffold88 WUBlastX LTR_Gypsy 222254 222316 35 - . . scaffold88 WUBlastX LTR_Gypsy 222318 223229 259 - . . scaffold88 WUBlastX LTR_Gypsy 222743 223966 79 - . . scaffold88 WUBlastX LTR_Gypsy 223625 223966 154 - . . scaffold88 WUBlastX LTR_Gypsy 223682 224059 70 - . . scaffold88 WUBlastX LTR_Gypsy 223906 224106 47 - . . scaffold88 WUBlastX LTR_Gypsy 224064 224201 44 - . . scaffold88 GLEAN mRNA 241312 246598 0.374385 - . ID=CGI_10011122; scaffold88 TRF Tandem_Repeat 245251 245305 110 + . . scaffold88 GLEAN promoter 246599 247598 0.374385 - . ID=CGI_10011122; scaffold88 TRF Tandem_Repeat 250760 250797 58 + . . scaffold88 TRF Tandem_Repeat 256551 257092 625 + . . scaffold88 TRF Tandem_Repeat 256563 257203 501 + . . scaffold88 TRF Tandem_Repeat 256574 257142 697 + . . scaffold88 TRF Tandem_Repeat 256574 257221 657 + . . scaffold88 TRF Tandem_Repeat 256584 257228 565 + . . scaffold88 TRF Tandem_Repeat 257917 258290 284 + . . scaffold88 TRF Tandem_Repeat 271046 271074 58 + . . scaffold88 TRF Tandem_Repeat 271950 271985 72 + . . scaffold88 TRF Tandem_Repeat 273362 273748 197 + . . scaffold88 TRF Tandem_Repeat 273369 273747 233 + . . scaffold88 TRF Tandem_Repeat 273430 273785 495 + . . scaffold88 WUBlastX DNA_Sola 277078 277413 107 - . . scaffold880 GLEAN promoter 3484 4483 0.917507 + . ID=CGI_10022176; scaffold880 GLEAN mRNA 4484 27641 0.917507 + . ID=CGI_10022176; scaffold880 TRF Tandem_Repeat 12637 12665 58 + . . scaffold880 GLEAN promoter 31973 32972 1 + . ID=CGI_10022177; scaffold880 GLEAN mRNA 32973 34958 1 + . ID=CGI_10022177; scaffold880 TRF Tandem_Repeat 45489 45518 60 + . . scaffold880 GLEAN promoter 47592 48591 0.999675 + . ID=CGI_10022178; scaffold880 GLEAN mRNA 48592 63756 0.999675 + . ID=CGI_10022178; scaffold880 TRF Tandem_Repeat 62817 63383 981 + . . scaffold880 TRF Tandem_Repeat 67159 67208 100 + . . scaffold880 GLEAN promoter 71435 72434 0.999372 + . ID=CGI_10022179; scaffold880 GLEAN mRNA 72435 72782 0.999372 + . ID=CGI_10022179; scaffold880 GLEAN promoter 75028 76027 0.999949 + . ID=CGI_10022180; scaffold880 GLEAN mRNA 76028 81958 0.999949 + . ID=CGI_10022180; scaffold880 GLEAN promoter 87452 88451 0.999285 + . ID=CGI_10022181; scaffold880 GLEAN mRNA 88452 95761 0.999285 + . ID=CGI_10022181; scaffold880 WUBlastX LINE_Penelope 91634 91684 37 + . . scaffold880 WUBlastX LINE_Penelope 91701 92423 60 + . . scaffold880 WUBlastX LINE_Penelope 91701 92102 126 + . . scaffold880 GLEAN promoter 95990 96989 0.999285 + . ID=CGI_10022182; scaffold880 TRF Tandem_Repeat 96091 96140 66 + . . scaffold880 GLEAN mRNA 96990 99160 0.999285 + . ID=CGI_10022182; scaffold880 GLEAN promoter 104940 105939 0.592814 + . ID=CGI_10022183; scaffold880 GLEAN mRNA 105940 112079 0.592814 + . ID=CGI_10022183; scaffold880 TRF Tandem_Repeat 118220 118260 82 + . . scaffold880 TRF Tandem_Repeat 120154 120581 569 + . . scaffold880 TRF Tandem_Repeat 126666 126794 150 + . . scaffold880 TRF Tandem_Repeat 129018 129054 65 + . . scaffold880 GLEAN mRNA 160331 179223 0.999351 - . ID=CGI_10022184; scaffold880 TRF Tandem_Repeat 161912 161946 70 + . . scaffold880 TRF Tandem_Repeat 163589 163655 57 + . . scaffold880 TRF Tandem_Repeat 174580 174642 126 + . . scaffold880 GLEAN promoter 179224 180223 0.999351 - . ID=CGI_10022184; scaffold880 TRF Tandem_Repeat 208654 208695 84 + . . scaffold880 GLEAN mRNA 211914 250131 0.856111 - . ID=CGI_10022185; scaffold880 TRF Tandem_Repeat 213162 213201 80 + . . scaffold880 TRF Tandem_Repeat 214227 214281 101 + . . scaffold880 TRF Tandem_Repeat 218203 218267 112 + . . scaffold880 TRF Tandem_Repeat 233595 233763 92 + . . scaffold880 TRF Tandem_Repeat 233939 234070 176 + . . scaffold880 TRF Tandem_Repeat 234142 234298 100 + . . scaffold880 TRF Tandem_Repeat 243510 243536 54 + . . scaffold880 TRF Tandem_Repeat 245799 245840 84 + . . scaffold880 TRF Tandem_Repeat 245931 245962 64 + . . scaffold880 TRF Tandem_Repeat 248387 248537 275 + . . scaffold880 GLEAN promoter 250132 251131 0.856111 - . ID=CGI_10022185; scaffold880 WUBlastX LINE_RTE-X 250894 252309 659 + . . scaffold880 GLEAN mRNA 256608 257351 0.999999 - . ID=CGI_10022186; scaffold880 GLEAN promoter 257352 258351 0.999999 - . ID=CGI_10022186; scaffold880 GLEAN mRNA 265801 270909 1 - . ID=CGI_10022187; scaffold880 GLEAN promoter 270910 271909 1 - . ID=CGI_10022187; scaffold880 TRF Tandem_Repeat 273374 273449 152 + . . scaffold880 WUBlastX LINE_CR1-L2 273988 274179 47 + . . scaffold880 WUBlastX LINE_CR1-L2 273988 274224 26 + . . scaffold880 WUBlastX LINE_CR1-L2 274260 274394 35 + . . scaffold880 WUBlastX LINE_CR1-L2 274457 274582 48 + . . scaffold880 TRF Tandem_Repeat 276111 276992 690 + . . scaffold880 GLEAN promoter 278769 279768 0.5 + . ID=CGI_10022188; scaffold880 GLEAN mRNA 279769 282996 0.5 + . ID=CGI_10022188; scaffold880 TRF Tandem_Repeat 287769 287829 81 + . . scaffold880 GLEAN promoter 292189 293188 0.999595 + . ID=CGI_10022189; scaffold880 GLEAN mRNA 293189 298928 0.999595 + . ID=CGI_10022189; scaffold880 GLEAN mRNA 302052 306365 0.999986 - . ID=CGI_10022190; scaffold880 TRF Tandem_Repeat 304322 304362 82 + . . scaffold880 TRF Tandem_Repeat 305247 305867 408 + . . scaffold880 GLEAN promoter 306366 307365 0.999986 - . ID=CGI_10022190; scaffold880 GLEAN mRNA 309380 325490 0.999986 - . ID=CGI_10022191; scaffold880 TRF Tandem_Repeat 312413 313120 745 + . . scaffold880 TRF Tandem_Repeat 312432 313120 606 + . . scaffold880 TRF Tandem_Repeat 313010 313099 60 + . . scaffold880 TRF Tandem_Repeat 316030 316121 175 + . . scaffold880 TRF Tandem_Repeat 317211 317537 476 + . . scaffold880 GLEAN promoter 325491 326490 0.999986 - . ID=CGI_10022191; scaffold880 TRF Tandem_Repeat 326155 326221 55 + . . scaffold880 TRF Tandem_Repeat 326713 326766 99 + . . scaffold880 GLEAN promoter 328934 329933 0.665857 + . ID=CGI_10022192; scaffold880 GLEAN mRNA 329934 350310 0.665857 + . ID=CGI_10022192; scaffold880 TRF Tandem_Repeat 337859 338282 468 + . . scaffold880 TRF Tandem_Repeat 337868 338286 570 + . . scaffold880 TRF Tandem_Repeat 337868 338286 533 + . . scaffold880 TRF Tandem_Repeat 341737 342016 327 + . . scaffold880 TRF Tandem_Repeat 341737 342016 292 + . . scaffold880 TRF Tandem_Repeat 355714 356657 1288 + . . scaffold880 WUBlastX DNA_TcMar-Tc1 358213 358554 30 + . . scaffold880 WUBlastX DNA_TcMar-Tc1 358390 358563 34 + . . scaffold880 WUBlastX DNA_TcMar-Tc1 358470 358931 52 + . . scaffold880 WUBlastX DNA_TcMar-Tc1 358581 358931 81 + . . scaffold880 WUBlastX DNA_TcMar-Tc1 360288 360491 78 + . . scaffold880 WUBlastX DNA_PiggyBac 364207 365865 664 - . . scaffold880 TRF Tandem_Repeat 370518 370548 62 + . . scaffold880 GLEAN promoter 390330 391329 0.934394 + . ID=CGI_10022193; scaffold880 GLEAN mRNA 391330 393936 0.934394 + . ID=CGI_10022193; scaffold880 TRF Tandem_Repeat 397829 398459 276 + . . scaffold880 TRF Tandem_Repeat 397990 398100 64 + . . scaffold880 WUBlastX DNA_Kolobok 402225 402530 68 - . . scaffold880 GLEAN promoter 402316 403315 0.999372 + . ID=CGI_10022194; scaffold880 WUBlastX DNA_Kolobok 402321 402512 104 - . . scaffold880 GLEAN promoter 403126 404125 0.999675 + . ID=CGI_10022195; scaffold880 GLEAN mRNA 403316 403531 0.999372 + . ID=CGI_10022194; scaffold880 GLEAN mRNA 404126 416998 0.999675 + . ID=CGI_10022195; scaffold880 TRF Tandem_Repeat 410891 412698 1964 + . . scaffold880 TRF Tandem_Repeat 411650 411709 66 + . . scaffold880 TRF Tandem_Repeat 411651 411713 90 + . . scaffold880 WUBlastX LINE_RTE-BovB 419311 419559 94 - . . scaffold880 WUBlastX DNA_PiggyBac 419603 419665 24 - . . scaffold880 WUBlastX DNA_PiggyBac 419663 420016 83 - . . scaffold880 WUBlastX DNA_PiggyBac 419756 420022 98 - . . scaffold880 TRF Tandem_Repeat 422118 422288 216 + . . scaffold880 TRF Tandem_Repeat 422357 422454 99 + . . scaffold880 WUBlastX DNA_hAT-Tip100 423619 423777 66 - . . scaffold880 TRF Tandem_Repeat 443909 443947 51 + . . scaffold880 TRF Tandem_Repeat 445630 445719 128 + . . scaffold880 WUBlastX DNA_Harbinger 456838 457125 72 - . . scaffold880 WUBlastX DNA_Harbinger 456934 457143 76 - . . scaffold880 WUBlastX DNA_Harbinger 458327 459034 370 - . . scaffold880 WUBlastX DNA_IS4EU 459421 459753 125 + . . scaffold880 WUBlastX DNA_IS4EU 460474 461544 604 - . . scaffold880 WUBlastX DNA_IS4EU 462212 462400 105 - . . scaffold880 WUBlastX DNA_TcMar-Tc1 471292 472083 216 + . . scaffold880 TRF Tandem_Repeat 473451 473485 70 + . . scaffold880 TRF Tandem_Repeat 484105 484151 58 + . . scaffold880 TRF Tandem_Repeat 484108 484164 69 + . . scaffold880 TRF Tandem_Repeat 484108 484159 86 + . . scaffold880 TRF Tandem_Repeat 489582 489613 64 + . . scaffold880 GLEAN mRNA 490990 515117 0.998312 - . ID=CGI_10022196; scaffold880 TRF Tandem_Repeat 492009 492189 173 + . . scaffold880 TRF Tandem_Repeat 492217 492327 105 + . . scaffold880 WUBlastX LTR_Gypsy 511725 512039 28 + . . scaffold880 WUBlastX LTR_Gypsy 511785 512042 45 + . . scaffold880 WUBlastX LTR_Gypsy 511860 512039 77 + . . scaffold880 WUBlastX LTR_Gypsy 511960 512376 102 + . . scaffold880 WUBlastX LTR_Gypsy 512023 512397 110 + . . scaffold880 WUBlastX LTR_Gypsy 512080 512406 133 + . . scaffold880 WUBlastX LTR_Gypsy 512080 512487 121 + . . scaffold880 GLEAN promoter 515118 516117 0.998312 - . ID=CGI_10022196; scaffold880 WUBlastX DNA_Harbinger 518498 519229 376 + . . scaffold880 WUBlastX DNA_Harbinger 520118 520315 88 + . . scaffold880 WUBlastX DNA_Harbinger 520136 520402 64 + . . scaffold880 GLEAN mRNA 520749 522391 1 - . ID=CGI_10022198; scaffold880 WUBlastX DNA_Harbinger 521305 521421 32 - . . scaffold880 GLEAN promoter 521974 522973 0.988013 + . ID=CGI_10022199; scaffold880 GLEAN promoter 522392 523391 1 - . ID=CGI_10022198; scaffold880 WUBlastX DNA_Harbinger 522396 522572 29 - . . scaffold880 TRF Tandem_Repeat 522904 522942 53 + . . scaffold880 GLEAN mRNA 522974 529941 0.988013 + . ID=CGI_10022199; scaffold880 TRF Tandem_Repeat 523883 523972 144 + . . scaffold880 WUBlastX DNA_Crypton 529873 530130 96 + . . scaffold880 WUBlastX DNA_Crypton 529888 530181 84 + . . scaffold880 GLEAN mRNA 532350 563503 0.438976 - . ID=CGI_10022201; scaffold880 WUBlastX LTR_Gypsy 533542 533649 29 - . . scaffold880 WUBlastX LTR_Gypsy 533760 533957 36 - . . scaffold880 WUBlastX LTR_Gypsy 534070 534117 31 - . . scaffold880 WUBlastX LTR_Gypsy 534128 534214 31 - . . scaffold880 TRF Tandem_Repeat 540983 541031 98 + . . scaffold880 TRF Tandem_Repeat 544099 544439 542 + . . scaffold880 TRF Tandem_Repeat 544186 544389 94 + . . scaffold880 WUBlastX LTR_Ngaro 544548 545492 365 - . . scaffold880 WUBlastX LTR_Ngaro 545471 547003 977 - . . scaffold880 WUBlastX LTR_Ngaro 547038 547493 70 - . . scaffold880 TRF Tandem_Repeat 553705 553734 51 + . . scaffold880 TRF Tandem_Repeat 558175 558208 68 + . . scaffold880 GLEAN promoter 563504 564503 0.438976 - . ID=CGI_10022201; scaffold880 TRF Tandem_Repeat 575819 576545 942 + . . scaffold880 WUBlastX DNA_Crypton 576606 577544 333 + . . scaffold880 WUBlastX LINE_L1-Tx1 577768 578127 143 + . . scaffold880 WUBlastX LINE_L1-Tx1 577987 578322 71 + . . scaffold880 WUBlastX LINE_L1-Tx1 578236 578607 159 + . . scaffold880 WUBlastX LINE_L1-Tx1 579091 579663 47 + . . scaffold880 WUBlastX LINE_L1-Tx1 579178 579669 60 + . . scaffold880 TRF Tandem_Repeat 579772 579798 54 + . . scaffold880 WUBlastX LINE_CR1-L2 584082 584198 21 - . . scaffold880 WUBlastX LINE_CR1-L2 584202 584303 38 - . . scaffold880 WUBlastX LINE_CR1-L2 584202 584489 21 - . . scaffold880 WUBlastX LINE_CR1-L2 585402 585677 65 - . . scaffold880 WUBlastX LINE_L2 585486 585662 102 - . . scaffold880 WUBlastX LINE_CR1-L2 585618 586319 283 + . . scaffold880 WUBlastX LINE_CR1-L2 585747 586235 331 + . . scaffold880 WUBlastX LINE_CR1 587528 587782 31 + . . scaffold880 WUBlastX LINE_CR1-L2 587576 587920 39 + . . scaffold880 WUBlastX LINE_CR1-L2 587594 587782 102 + . . scaffold880 WUBlastX DNA_IS4EU 596450 597055 66 + . . scaffold880 WUBlastX DNA_IS4EU 597045 597263 40 + . . scaffold880 WUBlastX DNA_Kolobok-IS4 599035 599250 100 - . . scaffold880 WUBlastX DNA_IS4EU 599056 599310 96 - . . scaffold880 GLEAN mRNA 602940 616997 0.674116 - . ID=CGI_10022202; scaffold880 GLEAN promoter 616998 617997 0.674116 - . ID=CGI_10022202; scaffold880 WUBlastX DNA_Kolobok-Hyd 617014 617352 23 - . . scaffold880 WUBlastX DNA_Kolobok-Hyd 617128 617385 37 - . . scaffold880 GLEAN mRNA 617251 619729 0.637182 - . ID=CGI_10022203; scaffold880 TRF Tandem_Repeat 617864 617929 114 + . . scaffold880 TRF Tandem_Repeat 619296 619349 108 + . . scaffold880 GLEAN promoter 619730 620729 0.637182 - . ID=CGI_10022203; scaffold880 TRF Tandem_Repeat 623879 623904 52 + . . scaffold880 WUBlastX LTR_Ngaro 650500 651000 272 - . . scaffold880 WUBlastX LTR_Ngaro 650972 651562 92 - . . scaffold880 WUBlastX LTR_Ngaro 651083 651439 239 - . . scaffold880 WUBlastX LTR_Ngaro 651433 651828 65 - . . scaffold880 WUBlastX LTR_Ngaro 651662 652816 32 - . . scaffold880 WUBlastX LTR_Ngaro 651677 652471 116 - . . scaffold880 WUBlastX LTR_Ngaro 652001 652402 151 - . . scaffold880 WUBlastX LINE_L1-Tx1 662608 662679 21 + . . scaffold880 TRF Tandem_Repeat 662808 663454 662 + . . scaffold880 WUBlastX LINE_L1-Tx1 663456 664289 726 + . . scaffold880 TRF Tandem_Repeat 665513 665570 98 + . . scaffold880 WUBlastX DNA_Kolobok 671714 671929 98 + . . scaffold880 WUBlastX DNA_Kolobok 672867 673103 104 - . . scaffold880 WUBlastX DNA_Kolobok 673376 673462 27 - . . scaffold880 GLEAN mRNA 673595 686654 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX DNA_Kolobok 673598 673813 40 - . . scaffold880 WUBlastX DNA_Kolobok 673937 674137 46 - . . scaffold880 WUBlastX DNA_Kolobok 674000 674146 59 - . . scaffold880 WUBlastX DNA_Kolobok 674236 674484 141 - . . scaffold880 WUBlastX DNA_Kolobok 674610 674891 96 - . . scaffold880 TRF Tandem_Repeat 682719 682772 108 + . . scaffold880 TRF Tandem_Repeat 682844 684180 1466 + . . scaffold880 GLEAN promoter 686655 687654 0.926854 - . ID=CGI_10022204; scaffold880 WUBlastX LINE_RTE-X 687336 687680 24 - . . scaffold880 WUBlastX LINE_RTE-X 687339 687758 21 - . . scaffold880 WUBlastX LINE_RTE-X 687396 687680 52 - . . scaffold880 WUBlastX DNA_Harbinger 688242 688520 49 - . . scaffold880 TRF Tandem_Repeat 692075 692118 88 + . . scaffold880 WUBlastX LINE_L2 707373 707897 75 - . . scaffold880 WUBlastX RC_Helitron 707463 708200 289 - . . scaffold880 WUBlastX DNA_Helitron 710714 712816 1495 - . . scaffold880 WUBlastX RC_Helitron 711638 713713 830 - . . scaffold880 WUBlastX DNA_Helitron 713147 714418 313 - . . scaffold881 WUBlastX LTR_Pao 9 836 540 + . . scaffold881 WUBlastX LTR_Pao 24 1022 321 + . . scaffold881 WUBlastX DNA_TcMar-ISRm1 1182 1502 109 - . . scaffold881 WUBlastX DNA_TcMar-ISRm1 1293 1556 100 - . . scaffold881 TRF Tandem_Repeat 13511 13729 262 + . . scaffold883 WUBlastX LINE_L2 3615 3731 24 + . . scaffold883 WUBlastX LINE_L2 4635 5213 90 + . . scaffold883 WUBlastX LINE_L2 4725 5429 409 + . . scaffold883 WUBlastX LINE_L2 5375 5701 93 + . . scaffold883 GLEAN mRNA 6133 6774 0.995229 - . ID=CGI_10002759; scaffold883 GLEAN promoter 6775 7774 0.995229 - . ID=CGI_10002759; scaffold883 TRF Tandem_Repeat 10868 10914 94 + . . scaffold883 TRF Tandem_Repeat 21431 21461 62 + . . scaffold883 GLEAN promoter 33360 34359 0.738397 + . ID=CGI_10002760; scaffold883 GLEAN mRNA 34360 40580 0.738397 + . ID=CGI_10002760; scaffold883 GLEAN mRNA 40015 40665 0.998938 - . ID=CGI_10002761; scaffold883 GLEAN promoter 40666 41665 0.998938 - . ID=CGI_10002761; scaffold883 GLEAN promoter 45528 46527 1 + . ID=CGI_10002762; scaffold883 GLEAN mRNA 46528 54919 1 + . ID=CGI_10002762; scaffold884 GLEAN promoter 610 1609 0.932105 + . ID=CGI_10002584; scaffold884 GLEAN mRNA 1610 37089 0.932105 + . ID=CGI_10002584; scaffold885 WUBlastX LINE_RTE-X 1 84 22 - . . scaffold885 WUBlastX LINE_RTE-X 371 1030 262 - . . scaffold885 WUBlastX LINE_RTE-X 494 1189 225 - . . scaffold885 TRF Tandem_Repeat 2107 2171 130 + . . scaffold885 GLEAN mRNA 2337 8721 1 - . ID=CGI_10025183; scaffold885 TRF Tandem_Repeat 3214 3255 84 + . . scaffold885 TRF Tandem_Repeat 5517 5602 86 + . . scaffold885 TRF Tandem_Repeat 8487 8520 52 + . . scaffold885 GLEAN promoter 8722 9721 1 - . ID=CGI_10025183; scaffold885 GLEAN promoter 11148 12147 0.994717 + . ID=CGI_10025185; scaffold885 GLEAN mRNA 11627 19636 0.352613 - . ID=CGI_10025184; scaffold885 GLEAN promoter 11934 12933 1 + . ID=CGI_10025186; scaffold885 GLEAN mRNA 12148 12542 0.994717 + . ID=CGI_10025185; scaffold885 WUBlastX DNA_Kolobok 12557 12691 23 + . . scaffold885 WUBlastX DNA_Kolobok 12602 12733 24 + . . scaffold885 WUBlastX DNA_Kolobok 12883 13128 105 + . . scaffold885 GLEAN mRNA 12934 13146 1 + . ID=CGI_10025186; scaffold885 WUBlastX DNA_Kolobok 13765 14010 136 - . . scaffold885 WUBlastX DNA_Kolobok 14164 14334 58 - . . scaffold885 GLEAN promoter 19637 20636 0.352613 - . ID=CGI_10025184; scaffold885 GLEAN mRNA 23517 43424 0.500539 - . ID=CGI_10025187; scaffold885 TRF Tandem_Repeat 37557 37780 412 + . . scaffold885 GLEAN promoter 43425 44424 0.500539 - . ID=CGI_10025187; scaffold885 GLEAN promoter 46167 47166 0.996263 + . ID=CGI_10025188; scaffold885 WUBlastX LINE_RTE-X 46595 46837 44 - . . scaffold885 WUBlastX LINE_RTE-X 46637 46813 69 - . . scaffold885 GLEAN mRNA 47167 48171 0.996263 + . ID=CGI_10025188; scaffold885 TRF Tandem_Repeat 54221 54291 56 + . . scaffold885 TRF Tandem_Repeat 54221 54291 56 + . . scaffold885 WUBlastX LINE_RTE-X 54864 58178 888 - . . scaffold885 WUBlastX LINE_L1 58131 58949 130 - . . scaffold885 WUBlastX LINE_L1 58302 59081 256 - . . scaffold885 WUBlastX LINE_L1 58305 59237 39 - . . scaffold885 GLEAN promoter 71365 72364 0.648527 + . ID=CGI_10025189; scaffold885 GLEAN mRNA 72365 76109 0.648527 + . ID=CGI_10025189; scaffold885 TRF Tandem_Repeat 83317 83354 76 + . . scaffold885 TRF Tandem_Repeat 91822 91849 56 + . . scaffold885 GLEAN promoter 93944 94943 1 + . ID=CGI_10025190; scaffold885 GLEAN mRNA 94944 96004 1 + . ID=CGI_10025190; scaffold885 GLEAN promoter 96860 97859 1 + . ID=CGI_10025191; scaffold885 GLEAN mRNA 97860 100334 1 + . ID=CGI_10025191; scaffold885 TRF Tandem_Repeat 99817 99848 64 + . . scaffold885 GLEAN promoter 101685 102684 1 + . ID=CGI_10025192; scaffold885 GLEAN mRNA 102685 109143 1 + . ID=CGI_10025192; scaffold885 GLEAN mRNA 115182 127777 0.479213 - . ID=CGI_10025193; scaffold885 GLEAN promoter 127778 128777 0.479213 - . ID=CGI_10025193; scaffold885 GLEAN mRNA 131900 133342 0.49953 - . ID=CGI_10025194; scaffold885 GLEAN promoter 133343 134342 0.49953 - . ID=CGI_10025194; scaffold885 TRF Tandem_Repeat 137183 137231 98 + . . scaffold885 TRF Tandem_Repeat 140795 140840 92 + . . scaffold885 TRF Tandem_Repeat 141410 141463 108 + . . scaffold885 GLEAN mRNA 146546 158448 1 - . ID=CGI_10025195; scaffold885 GLEAN promoter 158449 159448 1 - . ID=CGI_10025195; scaffold885 TRF Tandem_Repeat 158562 158599 76 + . . scaffold885 TRF Tandem_Repeat 161726 161760 61 + . . scaffold885 TRF Tandem_Repeat 163461 163517 114 + . . scaffold885 TRF Tandem_Repeat 173327 173418 94 + . . scaffold885 TRF Tandem_Repeat 173496 173612 117 + . . scaffold885 TRF Tandem_Repeat 173788 173877 67 + . . scaffold885 TRF Tandem_Repeat 178436 178494 111 + . . scaffold885 TRF Tandem_Repeat 190176 190261 100 + . . scaffold885 GLEAN mRNA 191019 195533 0.999943 - . ID=CGI_10025196; scaffold885 GLEAN promoter 195534 196533 0.999943 - . ID=CGI_10025196; scaffold885 TRF Tandem_Repeat 199677 199720 88 + . . scaffold885 TRF Tandem_Repeat 202588 202808 179 + . . scaffold885 TRF Tandem_Repeat 203507 204500 1016 + . . scaffold885 TRF Tandem_Repeat 214575 214823 367 + . . scaffold885 WUBlastX LTR_Gypsy 245309 245524 42 - . . scaffold885 WUBlastX LTR_Gypsy 245407 245739 88 - . . scaffold885 WUBlastX LTR_Gypsy 245627 245893 94 - . . scaffold885 WUBlastX LTR_Gypsy 245889 246014 30 - . . scaffold885 WUBlastX LTR_Gypsy 246105 246380 24 - . . scaffold885 WUBlastX LTR_Gypsy 246171 246359 26 - . . scaffold885 WUBlastX LTR_Gypsy 246234 246731 24 - . . scaffold885 WUBlastX LTR_Gypsy 246234 246476 54 - . . scaffold885 WUBlastX LTR_Gypsy 246449 246598 82 - . . scaffold885 WUBlastX LTR_Gypsy 247128 247469 39 - . . scaffold885 WUBlastX LTR_Gypsy 247558 247929 31 - . . scaffold885 WUBlastX LTR_Gypsy 249944 250129 47 - . . scaffold885 WUBlastX LTR_Gypsy 249944 250090 54 - . . scaffold885 WUBlastX LTR_Gypsy 250104 250277 43 - . . scaffold885 WUBlastX LINE_L1 255734 256153 155 + . . scaffold885 WUBlastX LINE_CR1 256205 256657 79 + . . scaffold885 WUBlastX LINE_RTE-X 256322 259585 1029 + . . scaffold885 TRF Tandem_Repeat 259761 259805 54 + . . scaffold885 TRF Tandem_Repeat 276663 276758 178 + . . scaffold885 GLEAN promoter 288981 289980 0.675945 + . ID=CGI_10025197; scaffold885 GLEAN mRNA 289981 295343 0.675945 + . ID=CGI_10025197; scaffold885 TRF Tandem_Repeat 295539 295594 103 + . . scaffold885 TRF Tandem_Repeat 297183 297265 148 + . . scaffold885 GLEAN mRNA 305532 311890 1 - . ID=CGI_10025198; scaffold885 TRF Tandem_Repeat 310227 310267 82 + . . scaffold885 TRF Tandem_Repeat 310694 310742 98 + . . scaffold885 GLEAN promoter 311891 312890 1 - . ID=CGI_10025198; scaffold885 TRF Tandem_Repeat 316773 316814 52 + . . scaffold885 GLEAN promoter 319411 320410 0.999675 + . ID=CGI_10025199; scaffold885 GLEAN mRNA 320411 324137 0.999675 + . ID=CGI_10025199; scaffold885 GLEAN mRNA 324192 334812 1 - . ID=CGI_10025200; scaffold885 GLEAN promoter 334012 335011 0.99926 + . ID=CGI_10025201; scaffold885 GLEAN promoter 334813 335812 1 - . ID=CGI_10025200; scaffold885 GLEAN mRNA 335012 343468 0.99926 + . ID=CGI_10025201; scaffold885 TRF Tandem_Repeat 344178 344308 167 + . . scaffold885 TRF Tandem_Repeat 344178 344308 135 + . . scaffold885 TRF Tandem_Repeat 344545 344592 96 + . . scaffold885 TRF Tandem_Repeat 345480 345512 66 + . . scaffold885 TRF Tandem_Repeat 345757 345871 151 + . . scaffold885 TRF Tandem_Repeat 345757 345882 120 + . . scaffold885 WUBlastX DNA_PiggyBac 353604 353978 102 + . . scaffold885 TRF Tandem_Repeat 357137 357217 162 + . . scaffold885 TRF Tandem_Repeat 358579 358653 150 + . . scaffold885 WUBlastX LINE_L1-Tx1 359557 359811 37 - . . scaffold885 WUBlastX LINE_L1-Tx1 359605 359793 39 - . . scaffold885 WUBlastX LINE_L1-Tx1 359823 360557 61 - . . scaffold885 WUBlastX LINE_L1-Tx1 360566 360883 58 - . . scaffold885 WUBlastX LINE_L1-Tx1 360578 360841 65 - . . scaffold885 TRF Tandem_Repeat 399023 399910 1379 + . . scaffold885 GLEAN promoter 402064 403063 0.797978 + . ID=CGI_10025203; scaffold885 GLEAN mRNA 402153 404137 1 - . ID=CGI_10025202; scaffold885 TRF Tandem_Repeat 402352 402402 102 + . . scaffold885 GLEAN mRNA 403064 410501 0.797978 + . ID=CGI_10025203; scaffold885 GLEAN promoter 404138 405137 1 - . ID=CGI_10025202; scaffold885 TRF Tandem_Repeat 414038 414078 82 + . . scaffold885 GLEAN promoter 414367 415366 0.999997 + . ID=CGI_10025204; scaffold885 GLEAN mRNA 415367 419346 0.999997 + . ID=CGI_10025204; scaffold885 TRF Tandem_Repeat 417400 417451 104 + . . scaffold885 GLEAN promoter 418947 419946 0.999676 + . ID=CGI_10025205; scaffold885 GLEAN mRNA 419947 436987 0.999676 + . ID=CGI_10025205; scaffold885 GLEAN mRNA 439898 465472 0.538648 - . ID=CGI_10025206; scaffold885 TRF Tandem_Repeat 461829 461892 128 + . . scaffold885 GLEAN promoter 461841 462840 0.660889 + . ID=CGI_10025207; scaffold885 GLEAN mRNA 462841 471160 0.660889 + . ID=CGI_10025207; scaffold885 TRF Tandem_Repeat 463068 463128 99 + . . scaffold885 GLEAN promoter 465473 466472 0.538648 - . ID=CGI_10025206; scaffold885 TRF Tandem_Repeat 470799 470862 121 + . . scaffold885 TRF Tandem_Repeat 474202 474252 102 + . . scaffold885 GLEAN mRNA 474594 488964 0.69287 - . ID=CGI_10025208; scaffold885 TRF Tandem_Repeat 477224 477274 77 + . . scaffold885 TRF Tandem_Repeat 487625 487695 63 + . . scaffold885 GLEAN promoter 488965 489964 0.69287 - . ID=CGI_10025208; scaffold885 TRF Tandem_Repeat 490368 490403 72 + . . scaffold885 GLEAN mRNA 499276 500517 0.478377 - . ID=CGI_10025209; scaffold885 GLEAN promoter 500162 501161 1 + . ID=CGI_10025210; scaffold885 GLEAN promoter 500518 501517 0.478377 - . ID=CGI_10025209; scaffold885 GLEAN mRNA 501162 507823 1 + . ID=CGI_10025210; scaffold885 WUBlastX LINE_RTE-BovB 503297 503725 39 + . . scaffold885 WUBlastX LINE_RTE-BovB 503573 503725 73 + . . scaffold885 WUBlastX LINE_RTE-BovB 504954 505181 66 + . . scaffold885 WUBlastX LINE_RTE-BovB 505041 505181 68 + . . scaffold885 TRF Tandem_Repeat 505655 505691 74 + . . scaffold885 GLEAN promoter 509624 510623 0.784086 + . ID=CGI_10025211; scaffold885 GLEAN mRNA 510624 522735 0.784086 + . ID=CGI_10025211; scaffold885 TRF Tandem_Repeat 518670 518715 83 + . . scaffold885 TRF Tandem_Repeat 518920 519841 1347 + . . scaffold885 GLEAN mRNA 524189 529226 0.883147 - . ID=CGI_10025212; scaffold885 TRF Tandem_Repeat 527549 527601 106 + . . scaffold885 GLEAN promoter 528726 529725 1 + . ID=CGI_10025213; scaffold885 TRF Tandem_Repeat 529111 529148 76 + . . scaffold885 GLEAN promoter 529227 530226 0.883147 - . ID=CGI_10025212; scaffold885 GLEAN mRNA 529726 531656 1 + . ID=CGI_10025213; scaffold885 TRF Tandem_Repeat 540911 540986 71 + . . scaffold885 TRF Tandem_Repeat 540911 540986 93 + . . scaffold885 TRF Tandem_Repeat 540912 540986 68 + . . scaffold885 WUBlastX LTR_Gypsy 553839 554153 74 - . . scaffold885 WUBlastX LTR_Gypsy 553911 554258 94 - . . scaffold885 WUBlastX LTR_Gypsy 553914 554180 97 - . . scaffold885 WUBlastX LINE_L2 559137 559307 52 + . . scaffold885 WUBlastX LINE_L2 559170 560471 705 + . . scaffold885 TRF Tandem_Repeat 571762 571817 103 + . . scaffold885 TRF Tandem_Repeat 572091 572159 84 + . . scaffold885 TRF Tandem_Repeat 573349 573487 192 + . . scaffold885 TRF Tandem_Repeat 581121 582657 1981 + . . scaffold885 TRF Tandem_Repeat 581121 582657 2019 + . . scaffold885 TRF Tandem_Repeat 591369 591417 66 + . . scaffold885 TRF Tandem_Repeat 591742 593405 1829 + . . scaffold885 TRF Tandem_Repeat 592247 593039 930 + . . scaffold885 TRF Tandem_Repeat 592396 593377 983 + . . scaffold885 TRF Tandem_Repeat 609809 611052 1582 + . . scaffold885 TRF Tandem_Repeat 613756 613801 92 + . . scaffold885 TRF Tandem_Repeat 621669 621723 110 + . . scaffold885 TRF Tandem_Repeat 634575 634639 121 + . . scaffold885 TRF Tandem_Repeat 655565 655613 98 + . . scaffold885 GLEAN promoter 668112 669111 0.449 + . ID=CGI_10025214; scaffold885 GLEAN mRNA 669112 669327 0.449 + . ID=CGI_10025214; scaffold885 GLEAN promoter 669586 670585 0.412509 + . ID=CGI_10025215; scaffold885 GLEAN mRNA 670586 671023 0.412509 + . ID=CGI_10025215; scaffold885 GLEAN mRNA 671085 687198 0.454154 - . ID=CGI_10025216; scaffold885 GLEAN promoter 687199 688198 0.454154 - . ID=CGI_10025216; scaffold885 GLEAN mRNA 700594 701470 0.994697 - . ID=CGI_10025217; scaffold885 GLEAN promoter 701471 702470 0.994697 - . ID=CGI_10025217; scaffold885 GLEAN promoter 717522 718521 0.999668 + . ID=CGI_10025218; scaffold885 GLEAN mRNA 718522 723292 0.999668 + . ID=CGI_10025218; scaffold885 TRF Tandem_Repeat 723717 723763 53 + . . scaffold885 WUBlastX LINE_RTE-X 730009 730284 51 - . . scaffold885 WUBlastX LINE_RTE-X 730132 730293 66 - . . scaffold885 TRF Tandem_Repeat 732270 732320 102 + . . scaffold885 TRF Tandem_Repeat 732762 732816 110 + . . scaffold885 WUBlastX LINE_RTE-X 732853 733086 39 + . . scaffold885 TRF Tandem_Repeat 734425 734467 52 + . . scaffold885 GLEAN promoter 734635 735634 0.999091 + . ID=CGI_10025219; scaffold885 GLEAN mRNA 735635 737285 0.999091 + . ID=CGI_10025219; scaffold885 GLEAN mRNA 738122 754755 0.70219 - . ID=CGI_10025220; scaffold885 GLEAN promoter 744665 745664 0.889602 + . ID=CGI_10025221; scaffold885 GLEAN mRNA 745665 764352 0.889602 + . ID=CGI_10025221; scaffold885 GLEAN promoter 754756 755755 0.70219 - . ID=CGI_10025220; scaffold885 TRF Tandem_Repeat 763486 763764 404 + . . scaffold885 TRF Tandem_Repeat 770216 770245 60 + . . scaffold885 TRF Tandem_Repeat 771454 771610 190 + . . scaffold885 TRF Tandem_Repeat 776788 776817 60 + . . scaffold885 GLEAN mRNA 778491 783334 0.592256 - . ID=CGI_10025222; scaffold885 TRF Tandem_Repeat 782115 782149 70 + . . scaffold885 GLEAN promoter 783335 784334 0.592256 - . ID=CGI_10025222; scaffold885 GLEAN mRNA 795374 796827 0.999959 - . ID=CGI_10025223; scaffold885 GLEAN promoter 796828 797827 0.999959 - . ID=CGI_10025223; scaffold885 TRF Tandem_Repeat 803340 803400 61 + . . scaffold885 TRF Tandem_Repeat 807118 807181 128 + . . scaffold885 GLEAN mRNA 815667 817190 0.999959 - . ID=CGI_10025224; scaffold885 GLEAN promoter 817191 818190 0.999959 - . ID=CGI_10025224; scaffold885 TRF Tandem_Repeat 821728 821788 122 + . . scaffold885 TRF Tandem_Repeat 822882 823114 177 + . . scaffold885 TRF Tandem_Repeat 826792 826835 88 + . . scaffold885 TRF Tandem_Repeat 826833 826882 100 + . . scaffold885 TRF Tandem_Repeat 834914 834991 108 + . . scaffold885 GLEAN promoter 841651 842650 0.530868 + . ID=CGI_10025225; scaffold885 GLEAN mRNA 842651 850096 0.530868 + . ID=CGI_10025225; scaffold885 WUBlastX LINE_RTE-X 850520 850873 44 - . . scaffold885 WUBlastX LINE_RTE-X 854192 854623 55 + . . scaffold885 WUBlastX LINE_RTE-X 854192 854410 117 + . . scaffold885 WUBlastX LINE_RTE-X 854198 854512 72 + . . scaffold885 GLEAN promoter 854481 855480 0.420226 + . ID=CGI_10025226; scaffold885 TRF Tandem_Repeat 855369 855470 163 + . . scaffold885 GLEAN mRNA 855481 856857 0.420226 + . ID=CGI_10025226; scaffold885 GLEAN mRNA 861530 866724 1 - . ID=CGI_10025227; scaffold885 GLEAN promoter 866725 867724 1 - . ID=CGI_10025227; scaffold885 TRF Tandem_Repeat 870075 870128 90 + . . scaffold885 WUBlastX DNA_Chapaev 872900 873175 51 - . . scaffold885 GLEAN promoter 875681 876680 0.999676 + . ID=CGI_10025228; scaffold885 GLEAN mRNA 876681 886541 0.999676 + . ID=CGI_10025228; scaffold885 GLEAN mRNA 877623 882233 0.999999 - . ID=CGI_10025229; scaffold885 GLEAN promoter 882234 883233 0.999999 - . ID=CGI_10025229; scaffold885 WUBlastX LINE_R2-Hero 887008 887088 25 - . . scaffold885 WUBlastX LINE_R2-Hero 887105 887344 39 - . . scaffold885 WUBlastX LINE_R2-Hero 887370 887567 62 - . . scaffold885 WUBlastX LINE_R2-Hero 887644 887946 94 - . . scaffold885 WUBlastX DNA_Sola 917391 918707 369 + . . scaffold885 WUBlastX DNA_Sola 917409 918281 440 + . . scaffold885 WUBlastX DNA_Sola 918288 918815 115 + . . scaffold885 WUBlastX DNA_Sola 918715 918885 24 + . . scaffold885 GLEAN promoter 921953 922952 0.997911 + . ID=CGI_10025230; scaffold885 GLEAN mRNA 922953 923321 0.997911 + . ID=CGI_10025230; scaffold885 WUBlastX LTR_Copia 924818 925339 45 + . . scaffold885 WUBlastX LTR_Copia 925310 926821 47 + . . scaffold885 WUBlastX LTR_Gypsy 925541 927232 801 + . . scaffold885 WUBlastX LTR_Gypsy 925886 927202 857 + . . scaffold885 WUBlastX LTR_Gypsy 927315 928712 1085 + . . scaffold885 GLEAN promoter 955449 956448 0.969214 + . ID=CGI_10025232; scaffold885 GLEAN mRNA 956449 984182 0.969214 + . ID=CGI_10025232; scaffold885 TRF Tandem_Repeat 976490 976646 314 + . . scaffold885 TRF Tandem_Repeat 977322 977657 347 + . . scaffold885 TRF Tandem_Repeat 980142 980200 118 + . . scaffold885 WUBlastX LTR_Ngaro 980868 981035 78 - . . scaffold885 GLEAN promoter 984596 985595 0.998419 + . ID=CGI_10025233; scaffold885 GLEAN mRNA 985596 995440 0.998419 + . ID=CGI_10025233; scaffold885 TRF Tandem_Repeat 991090 991120 62 + . . scaffold885 WUBlastX DNA_Zator 993609 993755 69 - . . scaffold885 GLEAN mRNA 1005329 1048267 0.991835 - . ID=CGI_10025234; scaffold885 WUBlastX LINE_L1-Tx1 1010516 1010851 198 + . . scaffold885 WUBlastX LINE_L1-Tx1 1010670 1011041 41 + . . scaffold885 WUBlastX LINE_L1 1011058 1011726 258 + . . scaffold885 WUBlastX LINE_L1 1011064 1011912 154 + . . scaffold885 WUBlastX LTR_DIRS 1017265 1017687 44 + . . scaffold885 WUBlastX LTR_DIRS 1017448 1017633 55 + . . scaffold885 WUBlastX LTR_DIRS 1017481 1017660 62 + . . scaffold885 WUBlastX LTR_DIRS 1017484 1017717 51 + . . scaffold885 WUBlastX LTR_DIRS 1017665 1018054 44 + . . scaffold885 WUBlastX LTR_DIRS 1017665 1018270 40 + . . scaffold885 WUBlastX LTR_DIRS 1018461 1018628 83 + . . scaffold885 WUBlastX LTR_DIRS 1018461 1018748 54 + . . scaffold885 TRF Tandem_Repeat 1025348 1026058 1005 + . . scaffold885 TRF Tandem_Repeat 1034440 1034481 84 + . . scaffold885 GLEAN promoter 1048268 1049267 0.991835 - . ID=CGI_10025234; scaffold885 GLEAN promoter 1049539 1050538 0.776639 + . ID=CGI_10025235; scaffold885 GLEAN mRNA 1050539 1050766 0.776639 + . ID=CGI_10025235; scaffold885 TRF Tandem_Repeat 1052651 1052676 52 + . . scaffold885 TRF Tandem_Repeat 1053376 1053425 100 + . . scaffold885 TRF Tandem_Repeat 1053771 1053810 80 + . . scaffold888 GLEAN mRNA 713 1108 0.999927 - . ID=CGI_10013431; scaffold888 GLEAN promoter 1109 2108 0.999927 - . ID=CGI_10013431; scaffold888 GLEAN mRNA 1109 4473 0.892397 - . ID=CGI_10013432; scaffold888 GLEAN promoter 4474 5473 0.892397 - . ID=CGI_10013432; scaffold888 GLEAN promoter 5556 6555 0.999286 + . ID=CGI_10013433; scaffold888 GLEAN promoter 6098 7097 0.513993 + . ID=CGI_10013434; scaffold888 GLEAN mRNA 6556 6918 0.999286 + . ID=CGI_10013433; scaffold888 GLEAN mRNA 7098 7439 0.513993 + . ID=CGI_10013434; scaffold888 GLEAN mRNA 8331 8615 0.776551 - . ID=CGI_10013435; scaffold888 GLEAN promoter 8616 9615 0.776551 - . ID=CGI_10013435; scaffold888 WUBlastX LINE_L1-Tx1 8641 9408 109 + . . scaffold888 TRF Tandem_Repeat 13048 13142 176 + . . scaffold888 GLEAN mRNA 16026 18677 1 - . ID=CGI_10013436; scaffold888 GLEAN promoter 18678 19677 1 - . ID=CGI_10013436; scaffold888 TRF Tandem_Repeat 21064 21115 104 + . . scaffold888 TRF Tandem_Repeat 21685 21736 104 + . . scaffold888 TRF Tandem_Repeat 21902 21983 164 + . . scaffold888 TRF Tandem_Repeat 23054 23107 108 + . . scaffold888 TRF Tandem_Repeat 24581 24864 172 + . . scaffold888 GLEAN promoter 26578 27577 0.977852 + . ID=CGI_10013437; scaffold888 GLEAN mRNA 27578 28747 0.977852 + . ID=CGI_10013437; scaffold888 GLEAN mRNA 32421 35541 1 - . ID=CGI_10013438; scaffold888 GLEAN promoter 35542 36541 1 - . ID=CGI_10013438; scaffold888 TRF Tandem_Repeat 37106 37131 52 + . . scaffold888 GLEAN mRNA 38299 38943 1 - . ID=CGI_10013439; scaffold888 GLEAN promoter 38944 39943 1 - . ID=CGI_10013439; scaffold888 GLEAN mRNA 41927 42511 0.531613 - . ID=CGI_10013440; scaffold888 GLEAN promoter 42512 43511 0.531613 - . ID=CGI_10013440; scaffold888 GLEAN mRNA 47563 61593 0.993907 - . ID=CGI_10013441; scaffold888 GLEAN promoter 61594 62593 0.993907 - . ID=CGI_10013441; scaffold888 GLEAN promoter 65885 66884 0.776912 + . ID=CGI_10013442; scaffold888 GLEAN mRNA 66885 80306 0.776912 + . ID=CGI_10013442; scaffold888 TRF Tandem_Repeat 77165 77639 699 + . . scaffold888 GLEAN mRNA 82909 85061 0.999507 - . ID=CGI_10013443; scaffold888 GLEAN promoter 85062 86061 0.999507 - . ID=CGI_10013443; scaffold888 GLEAN mRNA 86897 90883 0.558382 - . ID=CGI_10013444; scaffold888 GLEAN promoter 90884 91883 0.558382 - . ID=CGI_10013444; scaffold888 TRF Tandem_Repeat 92547 92631 98 + . . scaffold888 GLEAN mRNA 93444 97177 0.777732 - . ID=CGI_10013445; scaffold888 GLEAN promoter 97178 98177 0.777732 - . ID=CGI_10013445; scaffold888 TRF Tandem_Repeat 97718 97768 102 + . . scaffold888 WUBlastX LINE_L2 97914 98315 59 - . . scaffold888 TRF Tandem_Repeat 100767 100804 76 + . . scaffold888 WUBlastX LINE_L1 101700 101957 41 - . . scaffold888 WUBlastX LINE_L1-Tx1 101700 101918 54 - . . scaffold888 WUBlastX LINE_RTE-X 104739 104933 22 + . . scaffold888 GLEAN promoter 106949 107948 0.995388 + . ID=CGI_10013446; scaffold888 GLEAN mRNA 107949 112332 0.995388 + . ID=CGI_10013446; scaffold888 GLEAN mRNA 118171 126388 0.999675 - . ID=CGI_10013447; scaffold888 GLEAN promoter 126389 127388 0.999675 - . ID=CGI_10013447; scaffold888 GLEAN promoter 130975 131974 0.728758 + . ID=CGI_10013448; scaffold888 GLEAN mRNA 131975 133404 0.728758 + . ID=CGI_10013448; scaffold888 TRF Tandem_Repeat 134555 134653 182 + . . scaffold888 TRF Tandem_Repeat 134702 134795 125 + . . scaffold888 TRF Tandem_Repeat 136183 136321 75 + . . scaffold888 TRF Tandem_Repeat 136228 136325 135 + . . scaffold888 GLEAN promoter 137773 138772 0.99934 + . ID=CGI_10013449; scaffold888 GLEAN mRNA 138773 145705 0.99934 + . ID=CGI_10013449; scaffold888 TRF Tandem_Repeat 145452 145569 184 + . . scaffold888 GLEAN mRNA 149355 164657 0.644782 - . ID=CGI_10013450; scaffold888 WUBlastX LINE_L1-Tx1 149517 150029 26 - . . scaffold888 GLEAN promoter 164658 165657 0.644782 - . ID=CGI_10013450; scaffold888 GLEAN mRNA 182153 192239 0.76916 - . ID=CGI_10013451; scaffold888 GLEAN promoter 192240 193239 0.76916 - . ID=CGI_10013451; scaffold888 GLEAN mRNA 195872 198815 0.713932 - . ID=CGI_10013452; scaffold888 GLEAN promoter 198816 199815 0.713932 - . ID=CGI_10013452; scaffold888 TRF Tandem_Repeat 201639 201672 68 + . . scaffold888 TRF Tandem_Repeat 203551 203587 58 + . . scaffold888 WUBlastX LINE_RTE-X 206483 206779 63 + . . scaffold888 WUBlastX LINE_RTE-X 206769 206987 32 + . . scaffold888 WUBlastX LINE_RTE-X 206772 206900 48 + . . scaffold888 GLEAN mRNA 209723 212533 0.220232 - . ID=CGI_10013453; scaffold888 GLEAN promoter 212534 213533 0.220232 - . ID=CGI_10013453; scaffold888 TRF Tandem_Repeat 212774 212828 103 + . . scaffold888 GLEAN promoter 215828 216827 0.648316 + . ID=CGI_10013454; scaffold888 GLEAN mRNA 216828 234759 0.648316 + . ID=CGI_10013454; scaffold888 TRF Tandem_Repeat 221623 222562 611 + . . scaffold888 TRF Tandem_Repeat 221713 221862 138 + . . scaffold888 TRF Tandem_Repeat 222711 222770 120 + . . scaffold888 TRF Tandem_Repeat 231187 231225 78 + . . scaffold888 TRF Tandem_Repeat 239683 239726 79 + . . scaffold888 GLEAN promoter 242397 243396 0.284124 + . ID=CGI_10013455; scaffold888 GLEAN mRNA 243397 274773 0.284124 + . ID=CGI_10013455; scaffold888 TRF Tandem_Repeat 268340 269050 309 + . . scaffold888 TRF Tandem_Repeat 268512 269029 608 + . . scaffold888 TRF Tandem_Repeat 269274 269308 54 + . . scaffold888 TRF Tandem_Repeat 272184 272210 54 + . . scaffold888 TRF Tandem_Repeat 272276 272300 50 + . . scaffold888 TRF Tandem_Repeat 272298 272332 70 + . . scaffold888 TRF Tandem_Repeat 272966 273187 266 + . . scaffold888 TRF Tandem_Repeat 273568 273811 312 + . . scaffold888 TRF Tandem_Repeat 281137 281227 76 + . . scaffold888 TRF Tandem_Repeat 283614 283704 76 + . . scaffold888 GLEAN mRNA 284108 288768 0.296079 - . ID=CGI_10013456; scaffold888 GLEAN promoter 288769 289768 0.296079 - . ID=CGI_10013456; scaffold888 TRF Tandem_Repeat 291963 292066 190 + . . scaffold888 GLEAN mRNA 304669 314627 1 - . ID=CGI_10013457; scaffold888 GLEAN promoter 313967 314966 0.648534 + . ID=CGI_10013458; scaffold888 GLEAN promoter 314628 315627 1 - . ID=CGI_10013457; scaffold888 GLEAN mRNA 314967 324222 0.648534 + . ID=CGI_10013458; scaffold888 WUBlastX LINE_L1 325961 326092 54 + . . scaffold888 GLEAN promoter 326507 327506 1 + . ID=CGI_10013459; scaffold888 GLEAN mRNA 327507 331350 1 + . ID=CGI_10013459; scaffold888 TRF Tandem_Repeat 334554 334627 84 + . . scaffold888 GLEAN mRNA 335636 340311 0.376374 - . ID=CGI_10013460; scaffold888 WUBlastX DNA_MuDR 335687 335989 48 - . . scaffold888 TRF Tandem_Repeat 336303 336334 55 + . . scaffold888 GLEAN promoter 339235 340234 0.996445 + . ID=CGI_10013461; scaffold888 GLEAN mRNA 340235 341896 0.996445 + . ID=CGI_10013461; scaffold888 GLEAN promoter 340312 341311 0.376374 - . ID=CGI_10013460; scaffold890 WUBlastX LINE_RTE-X 1180 1428 66 - . . scaffold890 WUBlastX LINE_RTE-X 1225 1449 81 - . . scaffold890 WUBlastX LINE_RTE-X 1243 1518 37 - . . scaffold890 WUBlastX LINE_RTE-X 1270 1419 95 - . . scaffold890 WUBlastX LINE_RTE-X 1788 1886 44 - . . scaffold890 TRF Tandem_Repeat 7318 7394 59 + . . scaffold890 GLEAN mRNA 13709 14146 1 - . ID=CGI_10014455; scaffold890 GLEAN promoter 14147 15146 1 - . ID=CGI_10014455; scaffold890 GLEAN mRNA 15215 15439 0.481188 - . ID=CGI_10014456; scaffold890 GLEAN promoter 15440 16439 0.481188 - . ID=CGI_10014456; scaffold890 GLEAN mRNA 15893 32108 0.777737 - . ID=CGI_10014457; scaffold890 GLEAN promoter 32109 33108 0.777737 - . ID=CGI_10014457; scaffold890 GLEAN mRNA 34355 36599 1 - . ID=CGI_10014458; scaffold890 TRF Tandem_Repeat 35334 35488 82 + . . scaffold890 GLEAN promoter 36600 37599 1 - . ID=CGI_10014458; scaffold890 GLEAN promoter 37933 38932 1 + . ID=CGI_10014459; scaffold890 GLEAN mRNA 38933 45696 1 + . ID=CGI_10014459; scaffold890 GLEAN promoter 45122 46121 0.999351 + . ID=CGI_10014460; scaffold890 GLEAN mRNA 46122 73210 0.999351 + . ID=CGI_10014460; scaffold890 TRF Tandem_Repeat 47897 48152 251 + . . scaffold890 TRF Tandem_Repeat 47897 48144 284 + . . scaffold890 TRF Tandem_Repeat 48643 48923 357 + . . scaffold890 TRF Tandem_Repeat 48651 48859 346 + . . scaffold890 TRF Tandem_Repeat 48651 48925 222 + . . scaffold890 GLEAN mRNA 59643 61313 0.999984 - . ID=CGI_10014461; scaffold890 GLEAN promoter 61314 62313 0.999984 - . ID=CGI_10014461; scaffold890 GLEAN mRNA 61317 65835 0.854327 - . ID=CGI_10014462; scaffold890 TRF Tandem_Repeat 64145 64176 64 + . . scaffold890 GLEAN promoter 65836 66835 0.854327 - . ID=CGI_10014462; scaffold890 GLEAN mRNA 80022 80987 0.548948 - . ID=CGI_10014463; scaffold890 GLEAN promoter 80988 81987 0.548948 - . ID=CGI_10014463; scaffold890 GLEAN mRNA 81187 101968 1 - . ID=CGI_10014464; scaffold890 WUBlastX DNA_TcMar-Tc1 83401 83868 70 - . . scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84408 115 - . . scaffold890 WUBlastX DNA_TcMar-Tc1 83473 84264 369 - . . scaffold890 GLEAN promoter 83536 84535 0.741718 + . ID=CGI_10014465; scaffold890 GLEAN mRNA 84536 98336 0.741718 + . ID=CGI_10014465; scaffold890 TRF Tandem_Repeat 85847 86120 79 + . . scaffold890 TRF Tandem_Repeat 85853 86128 188 + . . scaffold890 TRF Tandem_Repeat 85910 86175 134 + . . scaffold890 GLEAN promoter 101969 102968 1 - . ID=CGI_10014464; scaffold890 GLEAN promoter 105817 106816 0.68033 + . ID=CGI_10014466; scaffold890 GLEAN mRNA 106817 120774 0.68033 + . ID=CGI_10014466; scaffold890 GLEAN promoter 120214 121213 0.860392 + . ID=CGI_10014467; scaffold890 GLEAN mRNA 121214 125567 0.860392 + . ID=CGI_10014467; scaffold890 GLEAN mRNA 128114 136232 0.991601 - . ID=CGI_10014468; scaffold890 GLEAN promoter 136233 137232 0.991601 - . ID=CGI_10014468; scaffold890 GLEAN mRNA 138690 153467 0.983866 - . ID=CGI_10014469; scaffold890 TRF Tandem_Repeat 145836 145892 114 + . . scaffold890 GLEAN promoter 153468 154467 0.983866 - . ID=CGI_10014469; scaffold890 TRF Tandem_Repeat 154419 154451 66 + . . scaffold890 WUBlastX LTR_Ngaro 158448 158741 46 + . . scaffold890 WUBlastX LTR_Ngaro 158523 158723 70 + . . scaffold890 WUBlastX LTR_Ngaro 159640 159819 55 + . . scaffold890 WUBlastX LTR_Ngaro 159817 160038 70 + . . scaffold890 WUBlastX LTR_Ngaro 159889 160038 89 + . . scaffold890 TRF Tandem_Repeat 166523 166555 66 + . . scaffold890 TRF Tandem_Repeat 171214 171262 98 + . . scaffold890 TRF Tandem_Repeat 171598 171634 74 + . . scaffold890 TRF Tandem_Repeat 174381 174411 62 + . . scaffold890 WUBlastX LINE_L1-Tx1 175921 176124 45 + . . scaffold890 GLEAN mRNA 176536 187315 0.783983 - . ID=CGI_10014470; scaffold890 GLEAN promoter 187316 188315 0.783983 - . ID=CGI_10014470; scaffold890 WUBlastX LINE_RTE-X 189092 190066 159 + . . scaffold890 WUBlastX LINE_RTE-X 189104 190468 146 + . . scaffold890 WUBlastX LINE_RTE-X 190470 190649 91 + . . scaffold890 WUBlastX LINE_RTE-X 190470 190682 41 + . . scaffold890 WUBlastX LINE_RTE-X 190470 190601 94 + . . scaffold890 GLEAN mRNA 195536 207766 0.887504 - . ID=CGI_10014471; scaffold890 TRF Tandem_Repeat 206787 207078 166 + . . scaffold890 TRF Tandem_Repeat 206826 207130 121 + . . scaffold890 TRF Tandem_Repeat 206984 207078 61 + . . scaffold890 GLEAN promoter 207767 208766 0.887504 - . ID=CGI_10014471; scaffold890 GLEAN mRNA 213327 219727 0.857445 - . ID=CGI_10014472; scaffold890 GLEAN promoter 219728 220727 0.857445 - . ID=CGI_10014472; scaffold890 GLEAN promoter 223824 224823 0.988958 + . ID=CGI_10014473; scaffold890 TRF Tandem_Repeat 224285 224309 50 + . . scaffold890 GLEAN mRNA 224824 230137 0.988958 + . ID=CGI_10014473; scaffold890 GLEAN promoter 240032 241031 0.999661 + . ID=CGI_10014474; scaffold890 GLEAN mRNA 241032 244868 0.999661 + . ID=CGI_10014474; scaffold890 GLEAN mRNA 248626 254230 1 - . ID=CGI_10014475; scaffold890 TRF Tandem_Repeat 248675 248725 57 + . . scaffold890 GLEAN promoter 254231 255230 1 - . ID=CGI_10014475; scaffold890 TRF Tandem_Repeat 255860 255904 54 + . . scaffold890 GLEAN promoter 256924 257923 0.997345 + . ID=CGI_10014476; scaffold890 GLEAN mRNA 257924 258781 0.997345 + . ID=CGI_10014476; scaffold890 GLEAN mRNA 260350 264319 0.98486 - . ID=CGI_10014477; scaffold890 GLEAN promoter 264320 265319 0.98486 - . ID=CGI_10014477; scaffold890 TRF Tandem_Repeat 265229 265254 52 + . . scaffold890 WUBlastX LINE_CR1-L2 265266 265370 27 + . . scaffold890 WUBlastX LINE_RTE-X 265360 265875 33 + . . scaffold890 WUBlastX LINE_I 265459 265881 54 + . . scaffold890 WUBlastX LINE_RTE-X 265633 265875 62 + . . scaffold890 WUBlastX LINE_Jockey 265708 265881 64 + . . scaffold890 WUBlastX LINE_CR1 265850 267106 48 + . . scaffold890 WUBlastX LINE_RTE-X 265898 266800 131 + . . scaffold890 WUBlastX LINE_RTE-X 266060 266884 132 + . . scaffold890 WUBlastX LINE_CR1 272377 272619 61 + . . scaffold890 WUBlastX LINE_L2 272440 272988 178 + . . scaffold890 GLEAN promoter 275803 276802 1 + . ID=CGI_10014478; scaffold890 GLEAN mRNA 276803 278352 1 + . ID=CGI_10014478; scaffold890 GLEAN mRNA 279605 286535 0.999017 - . ID=CGI_10014479; scaffold890 TRF Tandem_Repeat 280913 281265 408 + . . scaffold890 GLEAN promoter 286536 287535 0.999017 - . ID=CGI_10014479; scaffold890 GLEAN mRNA 287435 312343 0.999997 - . ID=CGI_10014480; scaffold890 WUBlastX LINE_L2 290532 290780 39 - . . scaffold890 WUBlastX LINE_L2 290577 290780 52 - . . scaffold890 WUBlastX LINE_CR1 290613 290780 70 - . . scaffold890 WUBlastX LINE_CR1 290670 290954 39 - . . scaffold890 TRF Tandem_Repeat 291485 291599 74 + . . scaffold890 GLEAN promoter 297441 298440 0.301589 + . ID=CGI_10014481; scaffold890 GLEAN mRNA 298441 324895 0.301589 + . ID=CGI_10014481; scaffold890 GLEAN promoter 312344 313343 0.999997 - . ID=CGI_10014480; scaffold890 TRF Tandem_Repeat 316968 317712 1124 + . . scaffold890 TRF Tandem_Repeat 318664 318810 73 + . . scaffold890 TRF Tandem_Repeat 318726 318855 93 + . . scaffold890 TRF Tandem_Repeat 341521 342614 1648 + . . scaffold890 TRF Tandem_Repeat 358179 358245 80 + . . scaffold890 TRF Tandem_Repeat 362512 362564 61 + . . scaffold890 GLEAN mRNA 373730 380801 0.838487 - . ID=CGI_10014482; scaffold890 TRF Tandem_Repeat 378245 378458 136 + . . scaffold890 GLEAN promoter 380802 381801 0.838487 - . ID=CGI_10014482; scaffold890 GLEAN mRNA 381628 401435 0.252269 - . ID=CGI_10014483; scaffold890 GLEAN promoter 390360 391359 0.641795 + . ID=CGI_10014484; scaffold890 GLEAN mRNA 391360 393150 0.641795 + . ID=CGI_10014484; scaffold890 GLEAN promoter 401436 401685 0.252269 - . ID=CGI_10014483; scaffold891 GLEAN mRNA 179 13985 0.135378 - . ID=CGI_10009063; scaffold891 GLEAN promoter 13986 14985 0.135378 - . ID=CGI_10009063; scaffold891 TRF Tandem_Repeat 15283 16288 535 + . . scaffold891 TRF Tandem_Repeat 15515 16156 481 + . . scaffold891 GLEAN mRNA 18950 25271 0.702382 - . ID=CGI_10009064; scaffold891 GLEAN promoter 25272 26271 0.702382 - . ID=CGI_10009064; scaffold891 GLEAN mRNA 25928 27346 0.999661 - . ID=CGI_10009065; scaffold891 GLEAN promoter 27347 28346 0.999661 - . ID=CGI_10009065; scaffold891 GLEAN mRNA 29303 33067 0.999607 - . ID=CGI_10009066; scaffold891 TRF Tandem_Repeat 31677 31869 242 + . . scaffold891 GLEAN promoter 33068 34067 0.999607 - . ID=CGI_10009066; scaffold891 GLEAN mRNA 33292 34329 0.999677 - . ID=CGI_10009067; scaffold891 GLEAN promoter 34330 35329 0.999677 - . ID=CGI_10009067; scaffold891 GLEAN promoter 36290 37289 0.998724 + . ID=CGI_10009068; scaffold891 GLEAN mRNA 37290 46117 0.998724 + . ID=CGI_10009068; scaffold891 TRF Tandem_Repeat 42869 42900 64 + . . scaffold891 TRF Tandem_Repeat 44501 44545 90 + . . scaffold891 GLEAN mRNA 48791 51440 1 - . ID=CGI_10009069; scaffold891 TRF Tandem_Repeat 49212 49423 345 + . . scaffold891 TRF Tandem_Repeat 51298 51355 116 + . . scaffold891 GLEAN promoter 51441 52440 1 - . ID=CGI_10009069; scaffold891 GLEAN mRNA 52676 55468 0.999676 - . ID=CGI_10009070; scaffold891 GLEAN promoter 55469 56468 0.999676 - . ID=CGI_10009070; scaffold891 WUBlastX LINE_RTE-BovB 57841 58221 46 - . . scaffold891 WUBlastX LINE_RTE-BovB 57899 58444 35 - . . scaffold891 WUBlastX LINE_RTE-BovB 58359 58523 89 - . . scaffold891 WUBlastX LINE_RTE-BovB 58529 58783 61 - . . scaffold891 WUBlastX LINE_RTE-BovB 58544 58759 65 - . . scaffold891 WUBlastX LINE_RTE-BovB 58791 58904 69 - . . scaffold891 GLEAN mRNA 62127 64798 1 - . ID=CGI_10009071; scaffold891 GLEAN promoter 64799 65798 1 - . ID=CGI_10009071; scaffold891 TRF Tandem_Repeat 85559 85597 78 + . . scaffold891 GLEAN promoter 92819 93818 1 + . ID=CGI_10009072; scaffold891 GLEAN mRNA 93819 94740 1 + . ID=CGI_10009072; scaffold891 WUBlastX DNA_Harbinger 165442 165591 80 + . . scaffold891 WUBlastX DNA_Harbinger 165448 165666 39 + . . scaffold891 WUBlastX DNA_Harbinger 165478 165591 93 + . . scaffold891 WUBlastX DNA_Harbinger 165669 166034 228 + . . scaffold891 WUBlastX DNA_Harbinger 166031 166267 39 + . . scaffold891 WUBlastX DNA_Harbinger 166064 166237 67 + . . scaffold891 TRF Tandem_Repeat 168090 168156 80 + . . scaffold891 TRF Tandem_Repeat 168674 168708 61 + . . scaffold891 TRF Tandem_Repeat 168897 168951 101 + . . scaffold891 WUBlastX DNA_PiggyBac 171735 172028 148 - . . scaffold891 WUBlastX DNA_PiggyBac 171747 172091 70 - . . scaffold891 WUBlastX DNA_PiggyBac 172826 173050 29 - . . scaffold891 WUBlastX DNA_PiggyBac 172928 173050 70 - . . scaffold891 WUBlastX DNA_PiggyBac 173288 173416 59 - . . scaffold891 WUBlastX DNA_PiggyBac 173365 173895 95 - . . scaffold891 WUBlastX DNA_PiggyBac 173431 173847 158 - . . scaffold891 TRF Tandem_Repeat 173903 173938 63 + . . scaffold891 TRF Tandem_Repeat 174760 174784 50 + . . scaffold891 WUBlastX LINE_L2 174992 175108 78 - . . scaffold891 TRF Tandem_Repeat 180458 180497 80 + . . scaffold891 TRF Tandem_Repeat 181540 181589 93 + . . scaffold891 GLEAN mRNA 185016 188061 0.988597 - . ID=CGI_10009073; scaffold891 GLEAN promoter 188062 189061 0.988597 - . ID=CGI_10009073; scaffold891 GLEAN promoter 188251 189250 0.702385 + . ID=CGI_10009074; scaffold891 GLEAN mRNA 189251 197847 0.702385 + . ID=CGI_10009074; scaffold891 WUBlastX DNA_En-Spm 191071 191367 28 + . . scaffold891 WUBlastX DNA_En-Spm 191083 191322 57 + . . scaffold891 WUBlastX DNA_En-Spm 191134 191334 79 + . . scaffold891 WUBlastX DNA_En-Spm 191487 191606 57 + . . scaffold891 WUBlastX DNA_En-Spm 191508 191648 46 + . . scaffold891 WUBlastX DNA_En-Spm 191888 192022 23 + . . scaffold891 WUBlastX DNA_En-Spm 191942 193129 312 + . . scaffold891 TRF Tandem_Repeat 196196 196400 261 + . . scaffold891 TRF Tandem_Repeat 197528 197568 82 + . . scaffold891 TRF Tandem_Repeat 200226 200325 137 + . . scaffold891 TRF Tandem_Repeat 201348 201405 100 + . . scaffold891 TRF Tandem_Repeat 201349 201402 65 + . . scaffold891 TRF Tandem_Repeat 220431 220480 84 + . . scaffold892 GLEAN promoter 10371 11370 0.803654 + . ID=CGI_10004785; scaffold892 GLEAN mRNA 11371 52730 0.803654 + . ID=CGI_10004785; scaffold892 GLEAN promoter 52149 53148 0.998244 + . ID=CGI_10004786; scaffold892 GLEAN mRNA 53149 90377 0.998244 + . ID=CGI_10004786; scaffold892 GLEAN mRNA 95502 105494 1 - . ID=CGI_10004787; scaffold892 GLEAN promoter 105495 106494 1 - . ID=CGI_10004787; scaffold892 GLEAN mRNA 105787 111137 0.999994 - . ID=CGI_10004788; scaffold892 GLEAN promoter 111138 111158 0.999994 - . ID=CGI_10004788; scaffold893 TRF Tandem_Repeat 3904 4237 458 + . . scaffold893 TRF Tandem_Repeat 5177 6661 2828 + . . scaffold893 GLEAN promoter 6019 7018 0.883043 + . ID=CGI_10005783; scaffold893 GLEAN mRNA 7019 29221 0.883043 + . ID=CGI_10005783; scaffold893 TRF Tandem_Repeat 34945 35093 129 + . . scaffold893 GLEAN mRNA 35850 49394 1 - . ID=CGI_10005784; scaffold893 TRF Tandem_Repeat 42427 42482 58 + . . scaffold893 TRF Tandem_Repeat 48765 48792 56 + . . scaffold893 GLEAN promoter 49395 50394 1 - . ID=CGI_10005784; scaffold893 TRF Tandem_Repeat 49798 49905 87 + . . scaffold893 TRF Tandem_Repeat 54621 54849 250 + . . scaffold893 TRF Tandem_Repeat 54621 54819 89 + . . scaffold893 TRF Tandem_Repeat 58092 58139 60 + . . scaffold893 WUBlastX LINE_RTE-X 64571 64648 20 + . . scaffold893 WUBlastX LINE_RTE-X 64642 64887 89 + . . scaffold893 TRF Tandem_Repeat 66265 66307 86 + . . scaffold893 TRF Tandem_Repeat 66305 66336 64 + . . scaffold893 GLEAN mRNA 68269 70386 0.982623 - . ID=CGI_10005785; scaffold893 GLEAN promoter 70387 71386 0.982623 - . ID=CGI_10005785; scaffold893 TRF Tandem_Repeat 73114 73204 137 + . . scaffold893 TRF Tandem_Repeat 74851 74957 142 + . . scaffold893 TRF Tandem_Repeat 79943 80347 251 + . . scaffold893 TRF Tandem_Repeat 79943 80347 294 + . . scaffold893 TRF Tandem_Repeat 79971 80196 182 + . . scaffold893 GLEAN promoter 81289 82288 0.990769 + . ID=CGI_10005786; scaffold893 GLEAN mRNA 82289 94048 0.990769 + . ID=CGI_10005786; scaffold893 TRF Tandem_Repeat 87968 88020 99 + . . scaffold893 TRF Tandem_Repeat 89612 89642 55 + . . scaffold893 GLEAN promoter 93678 94677 1 + . ID=CGI_10005787; scaffold893 GLEAN mRNA 94678 101858 1 + . ID=CGI_10005787; scaffold893 TRF Tandem_Repeat 109336 109402 80 + . . scaffold893 TRF Tandem_Repeat 110319 110343 50 + . . scaffold893 TRF Tandem_Repeat 110345 110402 116 + . . scaffold893 TRF Tandem_Repeat 110897 110963 89 + . . scaffold893 TRF Tandem_Repeat 117074 117204 160 + . . scaffold893 GLEAN promoter 120186 121185 0.692171 + . ID=CGI_10005788; scaffold893 GLEAN mRNA 121186 133628 0.692171 + . ID=CGI_10005788; scaffold893 TRF Tandem_Repeat 132696 132726 53 + . . scaffold894 GLEAN promoter 7662 8661 0.747146 + . ID=CGI_10008536; scaffold894 GLEAN mRNA 8662 10359 0.747146 + . ID=CGI_10008536; scaffold894 GLEAN promoter 9918 10917 0.650867 + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 10654 10713 111 + . . scaffold894 GLEAN mRNA 10918 35860 0.650867 + . ID=CGI_10008537; scaffold894 TRF Tandem_Repeat 16621 16666 92 + . . scaffold894 TRF Tandem_Repeat 22727 22876 158 + . . scaffold894 TRF Tandem_Repeat 26518 26578 58 + . . scaffold894 TRF Tandem_Repeat 31200 31255 76 + . . scaffold894 TRF Tandem_Repeat 31209 31256 69 + . . scaffold894 TRF Tandem_Repeat 31537 31622 145 + . . scaffold894 TRF Tandem_Repeat 36124 36185 74 + . . scaffold894 TRF Tandem_Repeat 39171 39278 108 + . . scaffold894 GLEAN promoter 41935 42934 0.999999 + . ID=CGI_10008538; scaffold894 GLEAN mRNA 42935 58269 0.999999 + . ID=CGI_10008538; scaffold894 TRF Tandem_Repeat 43998 44079 123 + . . scaffold894 TRF Tandem_Repeat 44472 44533 124 + . . scaffold894 TRF Tandem_Repeat 55541 55586 92 + . . scaffold894 GLEAN mRNA 58744 62629 0.642558 - . ID=CGI_10008539; scaffold894 TRF Tandem_Repeat 59738 59784 94 + . . scaffold894 TRF Tandem_Repeat 61351 61404 108 + . . scaffold894 GLEAN promoter 62630 63629 0.642558 - . ID=CGI_10008539; scaffold894 TRF Tandem_Repeat 63381 63420 80 + . . scaffold894 GLEAN mRNA 63712 66396 1 - . ID=CGI_10008540; scaffold894 GLEAN promoter 65601 66600 0.282644 + . ID=CGI_10008541; scaffold894 GLEAN promoter 66397 67396 1 - . ID=CGI_10008540; scaffold894 GLEAN mRNA 66601 75818 0.282644 + . ID=CGI_10008541; scaffold894 TRF Tandem_Repeat 71865 72085 158 + . . scaffold894 TRF Tandem_Repeat 72487 73237 1118 + . . scaffold894 GLEAN mRNA 90042 100055 0.923835 - . ID=CGI_10008542; scaffold894 TRF Tandem_Repeat 95592 95662 78 + . . scaffold894 TRF Tandem_Repeat 95592 95662 67 + . . scaffold894 TRF Tandem_Repeat 95593 95659 68 + . . scaffold894 TRF Tandem_Repeat 96369 96404 56 + . . scaffold894 GLEAN promoter 100056 101055 0.923835 - . ID=CGI_10008542; scaffold894 GLEAN mRNA 106006 110292 0.442728 - . ID=CGI_10008543; scaffold894 GLEAN promoter 110293 111292 0.442728 - . ID=CGI_10008543; scaffold894 TRF Tandem_Repeat 111211 111269 118 + . . scaffold894 GLEAN promoter 116008 117007 0.568904 + . ID=CGI_10008544; scaffold894 GLEAN mRNA 117008 134464 0.568904 + . ID=CGI_10008544; scaffold894 TRF Tandem_Repeat 130093 130657 887 + . . scaffold894 TRF Tandem_Repeat 131075 131296 444 + . . scaffold894 TRF Tandem_Repeat 131573 132045 777 + . . scaffold894 TRF Tandem_Repeat 136857 136900 88 + . . scaffold894 GLEAN mRNA 140138 141510 1 - . ID=CGI_10008545; scaffold894 GLEAN promoter 141511 142510 1 - . ID=CGI_10008545; scaffold894 TRF Tandem_Repeat 143421 143469 98 + . . scaffold894 GLEAN promoter 145701 146700 0.654733 + . ID=CGI_10008546; scaffold894 GLEAN mRNA 146701 151243 0.654733 + . ID=CGI_10008546; scaffold894 GLEAN mRNA 150089 157261 0.544755 - . ID=CGI_10008547; scaffold894 WUBlastX DNA_hAT-Tip100 152465 153283 198 - . . scaffold894 WUBlastX DNA_hAT-Tip100 152465 153079 303 - . . scaffold894 GLEAN promoter 157262 158261 0.544755 - . ID=CGI_10008547; scaffold894 TRF Tandem_Repeat 157769 157816 71 + . . scaffold894 TRF Tandem_Repeat 159620 159683 110 + . . scaffold894 WUBlastX LINE_L1-Tx1 168841 169221 84 + . . scaffold894 WUBlastX LINE_L1-Tx1 168859 169287 67 + . . scaffold894 TRF Tandem_Repeat 169424 169459 63 + . . scaffold894 GLEAN promoter 170936 171935 0.999624 + . ID=CGI_10008548; scaffold894 GLEAN mRNA 171936 185580 0.999624 + . ID=CGI_10008548; scaffold894 WUBlastX LINE_L1-Tx1 181413 181877 35 + . . scaffold894 WUBlastX LINE_L1-Tx1 181431 181766 96 + . . scaffold894 WUBlastX LINE_L1-Tx1 183566 184030 35 + . . scaffold894 WUBlastX LINE_L1-Tx1 183584 183919 96 + . . scaffold894 TRF Tandem_Repeat 191019 191078 120 + . . scaffold894 TRF Tandem_Repeat 202094 202142 98 + . . scaffold895 TRF Tandem_Repeat 21595 21650 112 + . . scaffold895 TRF Tandem_Repeat 28423 28453 53 + . . scaffold895 TRF Tandem_Repeat 46403 46888 272 + . . scaffold895 TRF Tandem_Repeat 46403 46888 459 + . . scaffold895 TRF Tandem_Repeat 49107 49161 110 + . . scaffold895 WUBlastX LINE_RTE-X 50362 50481 22 + . . scaffold895 WUBlastX LINE_RTE-X 50493 50684 40 + . . scaffold895 WUBlastX LINE_RTE-X 50526 50780 61 + . . scaffold895 WUBlastX LINE_RTE-X 51243 51350 39 + . . scaffold895 TRF Tandem_Repeat 52864 53207 267 + . . scaffold895 TRF Tandem_Repeat 52865 53204 369 + . . scaffold895 TRF Tandem_Repeat 52865 53198 394 + . . scaffold895 TRF Tandem_Repeat 53545 53603 52 + . . scaffold895 TRF Tandem_Repeat 54738 54776 71 + . . scaffold895 TRF Tandem_Repeat 69168 69918 792 + . . scaffold895 TRF Tandem_Repeat 71789 71854 98 + . . scaffold895 TRF Tandem_Repeat 71792 71853 72 + . . scaffold895 TRF Tandem_Repeat 71792 71853 90 + . . scaffold895 TRF Tandem_Repeat 73259 73292 68 + . . scaffold895 TRF Tandem_Repeat 93592 93713 172 + . . scaffold895 TRF Tandem_Repeat 93592 94092 465 + . . scaffold895 TRF Tandem_Repeat 93724 94070 140 + . . scaffold895 TRF Tandem_Repeat 93832 94092 276 + . . scaffold895 TRF Tandem_Repeat 102726 102819 107 + . . scaffold895 TRF Tandem_Repeat 102744 102832 81 + . . scaffold895 TRF Tandem_Repeat 106085 106146 124 + . . scaffold895 WUBlastX LINE_RTE-RTE 110700 110738 25 - . . scaffold895 WUBlastX LINE_RTE-BovB 111155 112477 432 - . . scaffold895 WUBlastX LINE_RTE-BovB 112395 112973 347 - . . scaffold895 TRF Tandem_Repeat 113642 113666 50 + . . scaffold895 TRF Tandem_Repeat 113666 113702 67 + . . scaffold895 WUBlastX LTR_Ngaro 114119 114298 96 - . . scaffold895 WUBlastX LTR_Ngaro 114128 114274 106 - . . scaffold895 WUBlastX LTR_Ngaro 114446 114607 21 - . . scaffold895 WUBlastX LTR_Ngaro 114494 114604 25 - . . scaffold895 WUBlastX LTR_Ngaro 114733 115050 26 - . . scaffold895 WUBlastX LTR_Ngaro 115165 115518 154 - . . scaffold895 WUBlastX LTR_Ngaro 115461 115586 21 - . . scaffold895 GLEAN mRNA 123607 146626 0.90891 - . ID=CGI_10011332; scaffold895 TRF Tandem_Repeat 134329 134362 52 + . . scaffold895 TRF Tandem_Repeat 139197 140465 2130 + . . scaffold895 GLEAN promoter 146627 147626 0.90891 - . ID=CGI_10011332; scaffold895 TRF Tandem_Repeat 149423 150235 1127 + . . scaffold895 TRF Tandem_Repeat 150398 150445 55 + . . scaffold895 GLEAN mRNA 151307 151513 0.99998 - . ID=CGI_10011333; scaffold895 GLEAN promoter 151514 152513 0.99998 - . ID=CGI_10011333; scaffold895 TRF Tandem_Repeat 160328 160369 84 + . . scaffold895 GLEAN mRNA 161369 172318 0.499351 - . ID=CGI_10011334; scaffold895 TRF Tandem_Repeat 161954 162058 192 + . . scaffold895 TRF Tandem_Repeat 163065 163098 54 + . . scaffold895 GLEAN promoter 172319 173318 0.499351 - . ID=CGI_10011334; scaffold895 GLEAN promoter 173153 174152 0.999921 + . ID=CGI_10011335; scaffold895 GLEAN mRNA 174153 176700 0.999921 + . ID=CGI_10011335; scaffold895 WUBlastX DNA_Harbinger 175138 175284 44 + . . scaffold895 WUBlastX DNA_Harbinger 176768 176965 61 - . . scaffold895 WUBlastX DNA_Harbinger 177105 177302 117 - . . scaffold895 WUBlastX DNA_Harbinger 177338 177475 20 - . . scaffold895 WUBlastX DNA_Harbinger 177365 177505 51 - . . scaffold895 WUBlastX DNA_Harbinger 177389 177475 53 - . . scaffold895 TRF Tandem_Repeat 177594 177630 74 + . . scaffold895 WUBlastX DNA_Harbinger 177638 177778 20 - . . scaffold895 WUBlastX DNA_Harbinger 177662 177811 56 - . . scaffold895 WUBlastX DNA_Harbinger 177662 177784 82 - . . scaffold895 WUBlastX DNA_Harbinger 178294 178695 88 - . . scaffold895 WUBlastX DNA_Harbinger 178324 178659 118 - . . scaffold895 WUBlastX LTR_Gypsy 178756 179334 121 - . . scaffold895 WUBlastX LTR_Gypsy 178852 179337 165 - . . scaffold895 WUBlastX LTR_Gypsy 178984 179376 364 - . . scaffold895 WUBlastX LTR_Gypsy 179360 180121 749 - . . scaffold895 WUBlastX LTR_Gypsy 180112 180702 223 - . . scaffold895 WUBlastX LTR_Gypsy 180698 181123 116 - . . scaffold895 WUBlastX LTR_Gypsy 180701 181309 20 - . . scaffold895 WUBlastX LTR_Gypsy 181217 181438 46 - . . scaffold895 WUBlastX LTR_Gypsy 181508 181693 44 - . . scaffold895 WUBlastX LTR_Gypsy 181638 181889 170 - . . scaffold895 WUBlastX LTR_Gypsy 181888 182109 125 - . . scaffold895 GLEAN mRNA 186513 216436 0.963467 - . ID=CGI_10011336; scaffold895 TRF Tandem_Repeat 193057 193092 72 + . . scaffold895 TRF Tandem_Repeat 197719 198208 558 + . . scaffold895 TRF Tandem_Repeat 202266 202375 193 + . . scaffold895 GLEAN promoter 216437 217436 0.963467 - . ID=CGI_10011336; scaffold895 GLEAN promoter 218063 219062 0.999846 + . ID=CGI_10011337; scaffold895 TRF Tandem_Repeat 218222 218258 74 + . . scaffold895 GLEAN mRNA 219063 223717 0.999846 + . ID=CGI_10011337; scaffold895 TRF Tandem_Repeat 221310 221570 323 + . . scaffold895 TRF Tandem_Repeat 221314 221540 375 + . . scaffold895 TRF Tandem_Repeat 222855 223080 353 + . . scaffold895 TRF Tandem_Repeat 223388 223613 353 + . . scaffold895 GLEAN mRNA 224828 253637 0.99996 - . ID=CGI_10011338; scaffold895 GLEAN promoter 253638 254637 0.99996 - . ID=CGI_10011338; scaffold896 GLEAN mRNA 10897 23121 0.937569 - . ID=CGI_10022829; scaffold896 GLEAN promoter 23122 24121 0.937569 - . ID=CGI_10022829; scaffold896 WUBlastX LTR_Ngaro 23509 23715 37 - . . scaffold896 WUBlastX LTR_Ngaro 23554 23715 42 - . . scaffold896 WUBlastX LTR_Ngaro 23744 23917 65 - . . scaffold896 WUBlastX LTR_Ngaro 24414 24935 46 - . . scaffold896 TRF Tandem_Repeat 27428 28417 798 + . . scaffold896 WUBlastX LINE_L1 28971 29468 102 + . . scaffold896 WUBlastX DNA_Sola 31488 32882 86 + . . scaffold896 WUBlastX DNA_Sola 31899 32996 282 + . . scaffold896 WUBlastX DNA_Sola 32999 33076 33 + . . scaffold896 WUBlastX DNA_Sola 33410 33640 51 + . . scaffold896 WUBlastX LINE_L1 37184 37321 90 + . . scaffold896 WUBlastX LINE_RTE-X 37908 38969 66 + . . scaffold896 WUBlastX LINE_RTE-X 39445 39690 52 + . . scaffold896 WUBlastX LINE_CR1 39493 39675 63 + . . scaffold896 WUBlastX LINE_RTE-X 39550 39705 74 + . . scaffold896 WUBlastX LINE_RTE-X 39692 40195 91 + . . scaffold896 WUBlastX LINE_RTE-X 39842 40195 149 + . . scaffold896 WUBlastX LINE_RTE-X 40189 40296 25 + . . scaffold896 WUBlastX LINE_RTE-X 40248 40994 236 + . . scaffold896 WUBlastX LINE_RTE-X 41012 41236 74 + . . scaffold896 WUBlastX RC_Helitron 44680 44946 72 - . . scaffold896 TRF Tandem_Repeat 45010 45055 65 + . . scaffold896 GLEAN mRNA 45378 49645 0.962391 - . ID=CGI_10022830; scaffold896 TRF Tandem_Repeat 45834 45891 116 + . . scaffold896 TRF Tandem_Repeat 45889 45947 91 + . . scaffold896 WUBlastX LINE_L1-Tx1 47541 47795 40 + . . scaffold896 WUBlastX LINE_L1-Tx1 47812 48321 71 + . . scaffold896 WUBlastX LINE_L1-Tx1 47842 48237 85 + . . scaffold896 GLEAN promoter 49646 50645 0.962391 - . ID=CGI_10022830; scaffold896 TRF Tandem_Repeat 56743 56782 71 + . . scaffold896 TRF Tandem_Repeat 69780 69937 124 + . . scaffold896 WUBlastX LINE_RTE-X 70498 70647 35 - . . scaffold896 WUBlastX LINE_RTE-X 70528 70701 28 - . . scaffold896 WUBlastX LINE_RTE-X 70537 70668 36 - . . scaffold896 WUBlastX LINE_RTE-X 70540 70647 43 - . . scaffold896 WUBlastX LINE_RTE-X 70787 71206 100 - . . scaffold896 WUBlastX LINE_RTE-X 70862 71272 92 - . . scaffold896 WUBlastX LINE_RTE-X 70871 71209 150 - . . scaffold896 TRF Tandem_Repeat 74435 74469 70 + . . scaffold896 GLEAN mRNA 75482 79755 1 - . ID=CGI_10022831; scaffold896 TRF Tandem_Repeat 77604 77664 122 + . . scaffold896 GLEAN promoter 79756 80755 1 - . ID=CGI_10022831; scaffold896 GLEAN mRNA 79994 116374 0.57033 - . ID=CGI_10022832; scaffold896 TRF Tandem_Repeat 91483 91529 94 + . . scaffold896 TRF Tandem_Repeat 92025 92176 205 + . . scaffold896 TRF Tandem_Repeat 107971 108327 404 + . . scaffold896 TRF Tandem_Repeat 107971 108327 417 + . . scaffold896 GLEAN promoter 110461 111460 1 + . ID=CGI_10022833; scaffold896 GLEAN mRNA 111461 112387 1 + . ID=CGI_10022833; scaffold896 WUBlastX LINE_R2-Hero 115117 115296 55 + . . scaffold896 WUBlastX LINE_R2-Hero 115155 115667 200 + . . scaffold896 WUBlastX LINE_R2-Hero 115673 115981 192 + . . scaffold896 WUBlastX LINE_R2-Hero 115945 116220 42 + . . scaffold896 WUBlastX LINE_R2-Hero 115983 116141 48 + . . scaffold896 GLEAN promoter 116375 117374 0.57033 - . ID=CGI_10022832; scaffold896 GLEAN promoter 119712 120711 0.394415 + . ID=CGI_10022834; scaffold896 GLEAN mRNA 120712 129433 0.394415 + . ID=CGI_10022834; scaffold896 WUBlastX LINE_RTE-X 123486 123629 46 + . . scaffold896 WUBlastX LINE_RTE-X 123519 123644 50 + . . scaffold896 WUBlastX LINE_Jockey 123653 123814 44 + . . scaffold896 WUBlastX LINE_Proto2 123719 123949 43 + . . scaffold896 WUBlastX LINE_L2 136224 136874 90 + . . scaffold896 WUBlastX LINE_L2 136413 136901 180 + . . scaffold896 WUBlastX LINE_L2 136873 138333 551 + . . scaffold896 GLEAN mRNA 138750 152691 0.535432 - . ID=CGI_10022835; scaffold896 GLEAN promoter 152692 153691 0.535432 - . ID=CGI_10022835; scaffold896 GLEAN mRNA 153351 158279 0.814088 - . ID=CGI_10022836; scaffold896 GLEAN promoter 158280 159279 0.814088 - . ID=CGI_10022836; scaffold896 TRF Tandem_Repeat 159706 159752 58 + . . scaffold896 WUBlastX LINE_L1 161929 161991 20 - . . scaffold896 WUBlastX LINE_L1-Tx1 161993 162067 34 - . . scaffold896 WUBlastX LINE_L1 162117 162377 24 - . . scaffold896 WUBlastX LINE_L1-Tx1 162162 162551 85 - . . scaffold896 WUBlastX LINE_L1-Tx1 162174 162500 89 - . . scaffold896 WUBlastX LINE_L1-Tx1 162604 162912 60 - . . scaffold896 WUBlastX LINE_L1-Tx1 162950 163498 71 - . . scaffold896 WUBlastX LINE_L1-Tx1 162983 163414 242 - . . scaffold896 GLEAN promoter 170119 171118 0.839674 + . ID=CGI_10022837; scaffold896 GLEAN mRNA 171119 182973 0.839674 + . ID=CGI_10022837; scaffold896 TRF Tandem_Repeat 181995 182091 117 + . . scaffold896 WUBlastX LINE_Penelope 185198 185521 58 - . . scaffold896 WUBlastX LINE_Penelope 185249 185521 65 - . . scaffold896 WUBlastX LINE_Penelope 185680 185871 38 - . . scaffold896 GLEAN mRNA 186221 200975 0.965943 - . ID=CGI_10022838; scaffold896 TRF Tandem_Repeat 187652 187699 96 + . . scaffold896 TRF Tandem_Repeat 200189 200318 201 + . . scaffold896 GLEAN promoter 200976 201975 0.965943 - . ID=CGI_10022838; scaffold896 TRF Tandem_Repeat 210721 210783 117 + . . scaffold896 TRF Tandem_Repeat 214808 214840 66 + . . scaffold896 TRF Tandem_Repeat 219362 219456 77 + . . scaffold896 WUBlastX DNA_IS4EU 221243 222202 463 + . . scaffold896 WUBlastX DNA_Kolobok-IS4 223128 223421 93 - . . scaffold896 WUBlastX DNA_IS4EU 223134 223493 70 - . . scaffold896 WUBlastX DNA_IS4EU 223441 224085 57 - . . scaffold896 WUBlastX DNA_IS4EU 223465 223776 67 - . . scaffold896 WUBlastX DNA_IS4EU 223960 224202 34 - . . scaffold896 WUBlastX DNA_IS4EU 224621 224914 28 - . . scaffold896 TRF Tandem_Repeat 226869 226937 129 + . . scaffold896 WUBlastX DNA_IS4EU 229767 230138 98 + . . scaffold896 GLEAN mRNA 238310 251019 0.969948 - . ID=CGI_10022839; scaffold896 WUBlastX LINE_L1 247183 247329 42 + . . scaffold896 WUBlastX LINE_L1-Tx1 247207 247377 89 + . . scaffold896 WUBlastX LINE_L1-Tx1 247207 247746 80 + . . scaffold896 WUBlastX LINE_L1-Tx1 247609 247836 75 + . . scaffold896 WUBlastX LINE_L1-Tx1 247680 247898 42 + . . scaffold896 WUBlastX LINE_L1-Tx1 247728 247862 51 + . . scaffold896 WUBlastX LINE_L1-Tx1 247734 247997 29 + . . scaffold896 WUBlastX LINE_L1 247797 247934 36 + . . scaffold896 WUBlastX LINE_L1 247982 248740 41 + . . scaffold896 WUBlastX LINE_L1-Tx1 248048 248671 166 + . . scaffold896 GLEAN promoter 251020 252019 0.969948 - . ID=CGI_10022839; scaffold896 TRF Tandem_Repeat 260543 260589 94 + . . scaffold896 TRF Tandem_Repeat 264494 264555 117 + . . scaffold896 TRF Tandem_Repeat 269755 270685 1379 + . . scaffold896 TRF Tandem_Repeat 292063 292106 70 + . . scaffold896 TRF Tandem_Repeat 294229 294323 118 + . . scaffold896 GLEAN mRNA 298848 329619 0.997833 - . ID=CGI_10022840; scaffold896 TRF Tandem_Repeat 301975 302167 188 + . . scaffold896 TRF Tandem_Repeat 301980 302150 115 + . . scaffold896 WUBlastX LINE_L1-Tx1 313060 314343 121 - . . scaffold896 WUBlastX LINE_L1-Tx1 314319 316364 909 - . . scaffold896 TRF Tandem_Repeat 318967 319144 82 + . . scaffold896 TRF Tandem_Repeat 320173 320225 97 + . . scaffold896 TRF Tandem_Repeat 320313 320358 92 + . . scaffold896 TRF Tandem_Repeat 320554 320620 134 + . . scaffold896 TRF Tandem_Repeat 320785 320824 80 + . . scaffold896 TRF Tandem_Repeat 321483 321701 112 + . . scaffold896 TRF Tandem_Repeat 321483 321697 165 + . . scaffold896 TRF Tandem_Repeat 321573 321701 77 + . . scaffold896 GLEAN promoter 329268 330267 1 + . ID=CGI_10022841; scaffold896 GLEAN promoter 329620 330619 0.997833 - . ID=CGI_10022840; scaffold896 GLEAN mRNA 330268 330831 1 + . ID=CGI_10022841; scaffold896 GLEAN mRNA 331534 333577 1 - . ID=CGI_10022842; scaffold896 GLEAN promoter 333578 334577 1 - . ID=CGI_10022842; scaffold896 GLEAN mRNA 336006 340036 0.641221 - . ID=CGI_10022843; scaffold896 GLEAN promoter 340037 341036 0.641221 - . ID=CGI_10022843; scaffold896 GLEAN mRNA 340373 344551 0.593052 - . ID=CGI_10022844; scaffold896 GLEAN promoter 344552 345551 0.593052 - . ID=CGI_10022844; scaffold896 GLEAN mRNA 346943 359094 0.999064 - . ID=CGI_10022845; scaffold896 GLEAN promoter 359095 360094 0.999064 - . ID=CGI_10022845; scaffold896 GLEAN mRNA 364483 367371 0.593383 - . ID=CGI_10022846; scaffold896 GLEAN promoter 367372 368371 0.593383 - . ID=CGI_10022846; scaffold896 TRF Tandem_Repeat 371142 371176 70 + . . scaffold896 TRF Tandem_Repeat 371177 371209 66 + . . scaffold896 TRF Tandem_Repeat 373792 374234 259 + . . scaffold896 GLEAN mRNA 376582 395795 0.585902 - . ID=CGI_10022847; scaffold896 TRF Tandem_Repeat 381058 381389 236 + . . scaffold896 TRF Tandem_Repeat 381136 381349 110 + . . scaffold896 TRF Tandem_Repeat 381289 381361 65 + . . scaffold896 TRF Tandem_Repeat 388159 388434 239 + . . scaffold896 TRF Tandem_Repeat 388224 388434 104 + . . scaffold896 TRF Tandem_Repeat 388337 388434 91 + . . scaffold896 TRF Tandem_Repeat 393279 393439 169 + . . scaffold896 TRF Tandem_Repeat 393468 393527 72 + . . scaffold896 GLEAN promoter 395796 396795 0.585902 - . ID=CGI_10022847; scaffold896 WUBlastX LINE_L1-Tx1 398100 398162 24 + . . scaffold896 WUBlastX LINE_L1-Tx1 398285 398836 231 + . . scaffold896 GLEAN promoter 403779 404778 0.990759 + . ID=CGI_10022848; scaffold896 GLEAN mRNA 404779 429815 0.990759 + . ID=CGI_10022848; scaffold896 TRF Tandem_Repeat 422937 422990 74 + . . scaffold896 TRF Tandem_Repeat 423163 424239 1777 + . . scaffold896 GLEAN promoter 428849 429848 0.584747 + . ID=CGI_10022849; scaffold896 GLEAN mRNA 429849 443777 0.584747 + . ID=CGI_10022849; scaffold896 TRF Tandem_Repeat 432433 432477 90 + . . scaffold896 TRF Tandem_Repeat 434072 434119 96 + . . scaffold896 GLEAN mRNA 434715 450263 0.551142 - . ID=CGI_10022850; scaffold896 WUBlastX LINE_RTE-X 437141 437596 46 - . . scaffold896 WUBlastX LINE_RTE-X 437261 437575 80 - . . scaffold896 WUBlastX LINE_RTE-X 437616 438044 37 - . . scaffold896 WUBlastX LINE_RTE-X 437751 438032 51 - . . scaffold896 WUBlastX LINE_RTE-X 438049 438420 134 - . . scaffold896 WUBlastX LINE_RTE-X 438052 438321 137 - . . scaffold896 WUBlastX LINE_RTE-BovB 438187 438477 31 - . . scaffold896 WUBlastX LINE_L1-Tx1 447535 448401 100 - . . scaffold896 GLEAN promoter 450264 451263 0.551142 - . ID=CGI_10022850; scaffold896 GLEAN promoter 450533 451532 0.883594 + . ID=CGI_10022851; scaffold896 GLEAN mRNA 451533 473887 0.883594 + . ID=CGI_10022851; scaffold896 GLEAN mRNA 451606 471670 0.999648 - . ID=CGI_10022852; scaffold896 TRF Tandem_Repeat 469514 469561 96 + . . scaffold896 TRF Tandem_Repeat 471254 471296 86 + . . scaffold896 GLEAN promoter 471671 472670 0.999648 - . ID=CGI_10022852; scaffold896 TRF Tandem_Repeat 472078 472151 62 + . . scaffold896 GLEAN promoter 480716 481715 0.9972 + . ID=CGI_10022853; scaffold896 GLEAN mRNA 481716 486971 0.9972 + . ID=CGI_10022853; scaffold896 GLEAN mRNA 488061 495344 0.956842 - . ID=CGI_10022854; scaffold896 GLEAN promoter 495345 496344 0.956842 - . ID=CGI_10022854; scaffold896 TRF Tandem_Repeat 496487 496545 118 + . . scaffold896 WUBlastX LINE_CR1-L2 498266 498736 39 + . . scaffold896 WUBlastX LINE_CR1-L2 498485 498736 78 + . . scaffold896 TRF Tandem_Repeat 502080 502118 62 + . . scaffold896 GLEAN mRNA 506358 516908 0.862017 - . ID=CGI_10022855; scaffold896 TRF Tandem_Repeat 507470 508602 745 + . . scaffold896 GLEAN promoter 516909 517908 0.862017 - . ID=CGI_10022855; scaffold896 TRF Tandem_Repeat 518257 518292 63 + . . scaffold896 GLEAN promoter 520514 521513 0.999676 + . ID=CGI_10022856; scaffold896 GLEAN mRNA 521514 535278 0.999676 + . ID=CGI_10022856; scaffold896 GLEAN mRNA 538699 541079 0.999661 - . ID=CGI_10022857; scaffold896 GLEAN promoter 541080 542079 0.999661 - . ID=CGI_10022857; scaffold896 GLEAN promoter 542449 543448 0.937847 + . ID=CGI_10022858; scaffold896 GLEAN mRNA 543449 545164 0.937847 + . ID=CGI_10022858; scaffold896 GLEAN promoter 545105 546104 0.989674 + . ID=CGI_10022859; scaffold896 GLEAN mRNA 546105 569764 0.989674 + . ID=CGI_10022859; scaffold896 TRF Tandem_Repeat 546325 546378 108 + . . scaffold896 TRF Tandem_Repeat 574000 574040 82 + . . scaffold896 GLEAN promoter 574179 575178 0.517792 + . ID=CGI_10022860; scaffold896 TRF Tandem_Repeat 574545 574585 82 + . . scaffold896 TRF Tandem_Repeat 574906 574949 88 + . . scaffold896 GLEAN mRNA 575179 582817 0.517792 + . ID=CGI_10022860; scaffold896 GLEAN promoter 589786 590785 0.352689 + . ID=CGI_10022861; scaffold896 GLEAN mRNA 590786 598030 0.352689 + . ID=CGI_10022861; scaffold896 TRF Tandem_Repeat 595240 595286 94 + . . scaffold896 GLEAN mRNA 597799 599368 1 - . ID=CGI_10022862; scaffold896 GLEAN promoter 599337 600336 0.998726 + . ID=CGI_10022863; scaffold896 GLEAN promoter 599369 600368 1 - . ID=CGI_10022862; scaffold896 GLEAN mRNA 600337 601600 0.998726 + . ID=CGI_10022863; scaffold896 GLEAN promoter 601861 602860 1 + . ID=CGI_10022864; scaffold896 GLEAN mRNA 602861 604860 1 + . ID=CGI_10022864; scaffold896 GLEAN promoter 606387 607386 1 + . ID=CGI_10022865; scaffold896 GLEAN mRNA 607387 608803 1 + . ID=CGI_10022865; scaffold896 GLEAN promoter 609654 610653 1 + . ID=CGI_10022866; scaffold896 TRF Tandem_Repeat 609745 609883 109 + . . scaffold896 GLEAN mRNA 610654 612287 1 + . ID=CGI_10022866; scaffold896 GLEAN promoter 614643 615642 1 + . ID=CGI_10022867; scaffold896 GLEAN mRNA 615643 617080 1 + . ID=CGI_10022867; scaffold896 GLEAN promoter 618733 619732 1 + . ID=CGI_10022868; scaffold896 GLEAN mRNA 619733 621188 1 + . ID=CGI_10022868; scaffold896 TRF Tandem_Repeat 623992 624053 124 + . . scaffold896 TRF Tandem_Repeat 624202 624247 92 + . . scaffold896 TRF Tandem_Repeat 628981 629045 130 + . . scaffold896 GLEAN promoter 631740 632739 0.999027 + . ID=CGI_10022869; scaffold896 GLEAN mRNA 632740 653381 0.999027 + . ID=CGI_10022869; scaffold896 TRF Tandem_Repeat 651214 651263 100 + . . scaffold896 GLEAN mRNA 656384 665344 1 - . ID=CGI_10022870; scaffold896 TRF Tandem_Repeat 661564 661612 98 + . . scaffold896 GLEAN promoter 665345 666344 1 - . ID=CGI_10022870; scaffold896 TRF Tandem_Repeat 665800 665871 128 + . . scaffold896 WUBlastX LINE_L1-Tx1 675213 675956 476 + . . scaffold896 TRF Tandem_Repeat 686435 686499 98 + . . scaffold896 TRF Tandem_Repeat 706460 706530 142 + . . scaffold896 TRF Tandem_Repeat 708086 708121 72 + . . scaffold896 TRF Tandem_Repeat 708121 708152 64 + . . scaffold896 TRF Tandem_Repeat 740170 740222 106 + . . scaffold896 WUBlastX LTR_Gypsy-Cigr 744192 744404 73 - . . scaffold896 TRF Tandem_Repeat 745763 745976 286 + . . scaffold896 TRF Tandem_Repeat 746026 746095 74 + . . scaffold896 GLEAN mRNA 747916 752173 0.654731 - . ID=CGI_10022871; scaffold896 GLEAN promoter 752174 753173 0.654731 - . ID=CGI_10022871; scaffold896 WUBlastX LTR_Gypsy-Cigr 757148 757453 283 + . . scaffold896 WUBlastX LTR_Gypsy-Cigr 757458 759377 729 + . . scaffold896 WUBlastX LTR_Gypsy-Cigr 757989 759296 849 + . . scaffold896 WUBlastX LTR_Gypsy 759036 759476 22 + . . scaffold896 GLEAN promoter 759310 760309 0.273625 + . ID=CGI_10022872; scaffold896 GLEAN mRNA 760310 764665 0.273625 + . ID=CGI_10022872; scaffold896 GLEAN promoter 764874 765873 0.614606 + . ID=CGI_10022873; scaffold896 GLEAN mRNA 765874 774406 0.614606 + . ID=CGI_10022873; scaffold896 TRF Tandem_Repeat 766663 766716 90 + . . scaffold896 TRF Tandem_Repeat 768492 768541 84 + . . scaffold896 TRF Tandem_Repeat 771000 771042 86 + . . scaffold896 TRF Tandem_Repeat 793394 793472 106 + . . scaffold896 GLEAN mRNA 794465 798122 0.999997 - . ID=CGI_10022874; scaffold896 GLEAN promoter 798123 799122 0.999997 - . ID=CGI_10022874; scaffold896 TRF Tandem_Repeat 798901 799044 135 + . . scaffold9 WUBlastX LINE_Penelope 2029 2385 27 - . . scaffold9 WUBlastX LINE_Penelope 2086 2583 179 - . . scaffold9 WUBlastX LINE_Penelope 2643 3359 546 + . . scaffold9 WUBlastX LINE_Penelope 3362 4318 454 + . . scaffold9 TRF Tandem_Repeat 20893 20922 51 + . . scaffold9 TRF Tandem_Repeat 26364 26426 126 + . . scaffold9 TRF Tandem_Repeat 27593 27650 116 + . . scaffold9 TRF Tandem_Repeat 27735 27786 104 + . . scaffold9 WUBlastX LINE_L2 56734 57123 211 + . . scaffold9 TRF Tandem_Repeat 73128 73161 68 + . . scaffold9 TRF Tandem_Repeat 73159 73197 78 + . . scaffold9 TRF Tandem_Repeat 73196 73239 88 + . . scaffold9 WUBlastX LINE_CR1-L2 81153 81449 29 - . . scaffold9 WUBlastX LINE_CR1-L2 81222 81449 57 - . . scaffold9 WUBlastX LINE_CR1-L2 81449 81610 99 - . . scaffold9 WUBlastX LTR_Ngaro 83473 83583 52 - . . scaffold9 WUBlastX LTR_Ngaro 83589 83912 121 - . . scaffold9 WUBlastX LTR_Ngaro 85220 85378 75 - . . scaffold9 WUBlastX LTR_Ngaro 85369 85632 158 - . . scaffold9 WUBlastX LTR_Ngaro 85369 85761 130 - . . scaffold9 WUBlastX LTR_Ngaro 85369 85695 141 - . . scaffold9 WUBlastX LTR_Ngaro 87496 87729 132 - . . scaffold9 WUBlastX LTR_Ngaro 87842 88066 100 - . . scaffold9 WUBlastX LTR_Ngaro 87875 88117 97 - . . scaffold9 GLEAN mRNA 92869 93393 0.573337 - . ID=CGI_10006687; scaffold9 GLEAN promoter 93394 94393 0.573337 - . ID=CGI_10006687; scaffold9 GLEAN promoter 94410 95409 0.999934 + . ID=CGI_10006688; scaffold9 WUBlastX LINE_CR1 94480 95451 237 + . . scaffold9 GLEAN mRNA 95410 95799 0.999934 + . ID=CGI_10006688; scaffold9 WUBlastX LINE_L1-Tx1 95940 97511 447 + . . scaffold9 WUBlastX LTR_Gypsy 98883 99305 68 + . . scaffold9 WUBlastX LTR_Gypsy 98973 101873 2010 + . . scaffold9 WUBlastX LTR_Gypsy 101867 102895 667 + . . scaffold9 TRF Tandem_Repeat 104412 104456 62 + . . scaffold9 WUBlastX DNA_P 104538 104948 41 + . . scaffold9 WUBlastX DNA_P 104742 105209 58 + . . scaffold9 WUBlastX DNA_P 105644 105805 42 - . . scaffold9 WUBlastX DNA_P 106439 106633 109 - . . scaffold9 WUBlastX DNA_P 106439 106597 121 - . . scaffold9 WUBlastX DNA_P 106685 106963 52 - . . scaffold9 WUBlastX DNA_P 106739 106867 81 - . . scaffold9 WUBlastX DNA_P 107045 107305 32 - . . scaffold9 WUBlastX DNA_P 107114 107347 125 - . . scaffold9 WUBlastX DNA_P 107372 107572 38 - . . scaffold9 WUBlastX DNA_P 107441 107587 75 - . . scaffold9 WUBlastX DNA_P 107648 107902 94 - . . scaffold9 WUBlastX DNA_P 107693 108058 86 - . . scaffold9 WUBlastX DNA_P 107693 107902 118 - . . scaffold9 WUBlastX DNA_P 108062 108235 128 - . . scaffold9 WUBlastX DNA_P 108335 108541 65 - . . scaffold9 WUBlastX DNA_P 108404 108538 85 - . . scaffold9 WUBlastX DNA_P 108672 108851 132 - . . scaffold9 WUBlastX DNA_P 108675 109073 100 - . . scaffold9 GLEAN mRNA 113128 115520 0.999027 - . ID=CGI_10006689; scaffold9 TRF Tandem_Repeat 113263 113658 260 + . . scaffold9 GLEAN promoter 115521 116520 0.999027 - . ID=CGI_10006689; scaffold9 TRF Tandem_Repeat 118326 118372 76 + . . scaffold9 GLEAN mRNA 123083 123658 0.481188 - . ID=CGI_10006690; scaffold9 GLEAN promoter 123659 124658 0.481188 - . ID=CGI_10006690; scaffold9 TRF Tandem_Repeat 145121 145185 85 + . . scaffold9 WUBlastX LINE_RTE-X 146186 146509 34 - . . scaffold9 WUBlastX LINE_RTE-X 146237 146521 87 - . . scaffold9 WUBlastX LINE_RTE-X 146524 147342 169 - . . scaffold9 WUBlastX LINE_RTE-X 147339 147737 162 - . . scaffold9 WUBlastX LINE_RTE-X 147405 147932 71 - . . scaffold9 TRF Tandem_Repeat 149159 149219 97 + . . scaffold9 TRF Tandem_Repeat 155305 155509 217 + . . scaffold90 TRF Tandem_Repeat 7719 7797 158 + . . scaffold90 WUBlastX LINE_RTE-X 32329 32580 31 - . . scaffold90 WUBlastX LINE_RTE-X 32413 32580 42 - . . scaffold90 TRF Tandem_Repeat 36861 36938 147 + . . scaffold90 TRF Tandem_Repeat 50498 50568 69 + . . scaffold90 TRF Tandem_Repeat 50511 50569 93 + . . scaffold90 TRF Tandem_Repeat 60008 60041 50 + . . scaffold90 TRF Tandem_Repeat 60222 60309 135 + . . scaffold90 WUBlastX DNA_Harbinger 62504 63124 261 + . . scaffold90 WUBlastX DNA_Harbinger 64784 65065 61 - . . scaffold90 WUBlastX DNA_Academ 67673 69835 445 - . . scaffold90 WUBlastX DNA_Academ 69560 69907 139 - . . scaffold90 TRF Tandem_Repeat 79183 79246 60 + . . scaffold90 WUBlastX LINE_L1-Tx1 97137 97340 96 + . . scaffold90 WUBlastX LINE_L1 97140 97385 62 + . . scaffold90 WUBlastX DNA_Maverick 124915 125724 74 + . . scaffold90 WUBlastX DNA_Maverick 124933 125562 110 + . . scaffold90 WUBlastX DNA_Maverick 125035 125550 229 + . . scaffold90 WUBlastX DNA_Maverick 128991 129341 84 + . . scaffold90 WUBlastX DNA_Maverick 129096 129341 85 + . . scaffold90 WUBlastX DNA_Maverick 130622 130849 25 - . . scaffold90 WUBlastX LTR_Gypsy 132019 132285 126 + . . scaffold90 WUBlastX LTR_Gypsy 134015 134803 482 + . . scaffold90 GLEAN promoter 134099 135098 0.999141 + . ID=CGI_10015160; scaffold90 GLEAN promoter 134730 135729 0.547035 + . ID=CGI_10015161; scaffold90 GLEAN mRNA 135099 135494 0.999141 + . ID=CGI_10015160; scaffold90 WUBlastX LTR_Gypsy 135588 135776 20 + . . scaffold90 GLEAN mRNA 135730 142790 0.547035 + . ID=CGI_10015161; scaffold90 WUBlastX DNA_Maverick 136159 136779 112 + . . scaffold90 WUBlastX LTR_Gypsy 136636 136956 23 + . . scaffold90 WUBlastX LTR_Gypsy 136819 136902 23 + . . scaffold90 WUBlastX DNA_Maverick 137077 137178 30 + . . scaffold90 WUBlastX DNA_Maverick 137178 137648 136 + . . scaffold90 WUBlastX DNA_Maverick 137427 137882 39 + . . scaffold90 WUBlastX DNA_Maverick 137721 137876 117 + . . scaffold90 WUBlastX LTR_Gypsy 137890 138801 802 + . . scaffold90 WUBlastX LTR_Gypsy 137890 139008 128 + . . scaffold90 WUBlastX LTR_Copia 139625 139762 26 + . . scaffold90 WUBlastX LTR_Gypsy 139988 140209 48 + . . scaffold90 WUBlastX LTR_Gypsy 140069 140539 107 + . . scaffold90 WUBlastX LTR_Gypsy 140339 140539 107 + . . scaffold90 WUBlastX LTR_Gypsy 145298 145501 75 + . . scaffold90 GLEAN mRNA 152213 152782 1 - . ID=CGI_10015162; scaffold90 GLEAN promoter 152783 153782 1 - . ID=CGI_10015162; scaffold90 WUBlastX LTR_Gypsy 153714 153866 24 - . . scaffold90 WUBlastX LTR_Gypsy 153738 154094 70 - . . scaffold90 WUBlastX LTR_Gypsy 153870 154091 125 - . . scaffold90 WUBlastX LTR_Gypsy 153879 154133 105 - . . scaffold90 WUBlastX LTR_Gypsy 154097 154207 34 - . . scaffold90 WUBlastX LTR_Gypsy 154097 154189 42 - . . scaffold90 WUBlastX LTR_Ngaro 161375 161488 45 - . . scaffold90 WUBlastX LTR_Pao 161599 161934 175 - . . scaffold90 WUBlastX LTR_Pao 161608 161994 167 - . . scaffold90 GLEAN mRNA 164116 164739 1 - . ID=CGI_10015163; scaffold90 GLEAN promoter 164740 165739 1 - . ID=CGI_10015163; scaffold90 WUBlastX DNA_Maverick 166441 166815 115 + . . scaffold90 WUBlastX DNA_Maverick 166603 166890 49 + . . scaffold90 WUBlastX DNA_Maverick 166868 167434 92 + . . scaffold90 WUBlastX DNA_Maverick 167433 167642 37 + . . scaffold90 WUBlastX DNA_Maverick 167541 170123 1596 + . . scaffold90 TRF Tandem_Repeat 170912 171008 76 + . . scaffold90 WUBlastX DNA_Maverick 171438 171851 165 - . . scaffold90 WUBlastX DNA_Maverick 171854 172258 136 - . . scaffold90 WUBlastX DNA_Maverick 171854 172183 162 - . . scaffold90 GLEAN promoter 175608 176607 0.612335 + . ID=CGI_10015164; scaffold90 GLEAN mRNA 176608 184316 0.612335 + . ID=CGI_10015164; scaffold90 WUBlastX DNA_hAT-hAT5 185726 186346 56 - . . scaffold90 TRF Tandem_Repeat 186358 186390 57 + . . scaffold90 WUBlastX LINE_L1 188463 188582 53 + . . scaffold90 WUBlastX LINE_L1-Tx1 188487 188978 48 + . . scaffold90 WUBlastX LINE_L1-Tx1 188969 189175 72 + . . scaffold90 WUBlastX LINE_L1 188984 189229 20 + . . scaffold90 WUBlastX DNA_En-Spm 190648 191208 379 + . . scaffold90 WUBlastX DNA_En-Spm 191204 191806 239 + . . scaffold90 WUBlastX DNA_En-Spm 191775 191909 40 + . . scaffold90 GLEAN promoter 192515 193514 0.902571 + . ID=CGI_10015165; scaffold90 GLEAN mRNA 193515 193730 0.902571 + . ID=CGI_10015165; scaffold90 WUBlastX DNA_Harbinger 196776 197720 345 + . . scaffold90 WUBlastX DNA_Harbinger 197430 197786 43 + . . scaffold90 GLEAN mRNA 198447 198857 0.999145 - . ID=CGI_10015166; scaffold90 GLEAN promoter 198858 199857 0.999145 - . ID=CGI_10015166; scaffold90 GLEAN mRNA 201707 202672 0.999991 - . ID=CGI_10015167; scaffold90 WUBlastX LTR_Pao 202672 202950 51 - . . scaffold90 GLEAN promoter 202673 203672 0.999991 - . ID=CGI_10015167; scaffold90 WUBlastX DNA_NOF 202780 203016 45 - . . scaffold90 WUBlastX LTR_Gypsy 203002 203775 116 - . . scaffold90 WUBlastX LTR_Gypsy 203176 203772 128 - . . scaffold90 WUBlastX LTR_Gypsy 203293 203775 274 - . . scaffold90 WUBlastX LTR_Gypsy 203772 203981 142 - . . scaffold90 WUBlastX LTR_Gypsy 203983 204648 105 - . . scaffold90 WUBlastX LTR_Gypsy 203983 204447 151 - . . scaffold90 WUBlastX LTR_Gypsy 204800 205156 312 - . . scaffold90 WUBlastX LTR_Gypsy 204869 205249 150 - . . scaffold90 WUBlastX LTR_Gypsy 211983 213005 178 + . . scaffold90 WUBlastX LTR_Gypsy 212142 213014 198 + . . scaffold90 WUBlastX LTR_Gypsy 213005 213259 54 + . . scaffold90 WUBlastX LTR_Gypsy 213077 213301 64 + . . scaffold90 WUBlastX LTR_Gypsy 213110 213298 96 + . . scaffold90 GLEAN promoter 234298 235297 0.298071 + . ID=CGI_10015168; scaffold90 GLEAN mRNA 235298 241117 0.298071 + . ID=CGI_10015168; scaffold90 WUBlastX DNA_Academ 246010 246441 23 + . . scaffold90 WUBlastX DNA_Academ 246432 246800 102 + . . scaffold90 WUBlastX DNA_Academ 246989 247138 24 + . . scaffold90 WUBlastX DNA_Academ 247113 247277 26 + . . scaffold90 WUBlastX DNA_hAT-hATw 251921 252211 80 + . . scaffold90 WUBlastX DNA_hAT-hATw 251924 252334 47 + . . scaffold90 GLEAN promoter 255704 256703 0.982419 + . ID=CGI_10015169; scaffold90 GLEAN mRNA 256704 258219 0.982419 + . ID=CGI_10015169; scaffold90 WUBlastX DNA_Harbinger 256713 256862 74 + . . scaffold90 WUBlastX DNA_Harbinger 258121 258264 24 - . . scaffold90 WUBlastX DNA_Harbinger 258151 258264 26 - . . scaffold90 WUBlastX DNA_Harbinger 259236 259370 96 - . . scaffold90 GLEAN promoter 264227 265226 0.629226 + . ID=CGI_10015170; scaffold90 GLEAN mRNA 265227 282021 0.629226 + . ID=CGI_10015170; scaffold90 WUBlastX DNA_Harbinger 269903 270115 35 - . . scaffold90 WUBlastX DNA_Harbinger 270241 270378 102 - . . scaffold90 WUBlastX DNA_Harbinger 270241 270405 39 - . . scaffold90 WUBlastX DNA_Harbinger 270805 270996 129 - . . scaffold90 WUBlastX DNA_Harbinger 270808 271050 76 - . . scaffold90 WUBlastX DNA_Harbinger 270999 271142 23 - . . scaffold90 TRF Tandem_Repeat 275973 276009 74 + . . scaffold90 WUBlastX LINE_RTE-X 278672 278968 31 - . . scaffold90 TRF Tandem_Repeat 282684 282721 51 + . . scaffold90 WUBlastX LINE_L2 299782 300300 177 + . . scaffold90 WUBlastX LINE_L2 299944 300300 277 + . . scaffold90 TRF Tandem_Repeat 300508 300541 61 + . . scaffold90 GLEAN promoter 305793 306792 0.984395 + . ID=CGI_10015171; scaffold90 GLEAN mRNA 306793 313671 0.984395 + . ID=CGI_10015171; scaffold90 WUBlastX LINE_RTE-X 316711 317028 75 - . . scaffold90 WUBlastX LINE_RTE-X 316720 317754 30 - . . scaffold90 WUBlastX LINE_RTE-X 317539 317760 36 - . . scaffold90 GLEAN promoter 318674 319673 0.945886 + . ID=CGI_10015172; scaffold90 GLEAN mRNA 319674 344915 0.945886 + . ID=CGI_10015172; scaffold90 TRF Tandem_Repeat 323433 323471 78 + . . scaffold90 TRF Tandem_Repeat 328785 328811 54 + . . scaffold90 TRF Tandem_Repeat 329451 329486 72 + . . scaffold90 WUBlastX DNA_hAT-Ac 339214 339474 78 - . . scaffold90 WUBlastX DNA_hAT-Ac 339277 339654 219 - . . scaffold90 WUBlastX DNA_hAT-Ac 340086 340202 39 - . . scaffold90 WUBlastX DNA_hAT-Ac 340124 341569 715 - . . scaffold90 GLEAN promoter 349016 350015 0.983028 + . ID=CGI_10015173; scaffold90 GLEAN mRNA 350016 357325 0.983028 + . ID=CGI_10015173; scaffold90 TRF Tandem_Repeat 353642 353712 142 + . . scaffold90 TRF Tandem_Repeat 368201 368236 63 + . . scaffold90 TRF Tandem_Repeat 378035 378102 136 + . . scaffold90 GLEAN mRNA 383801 400055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_TcMar-Marin 384849 385052 87 + . . scaffold90 WUBlastX DNA_TcMar-Marin 384849 385406 83 + . . scaffold90 TRF Tandem_Repeat 387951 388281 398 + . . scaffold90 WUBlastX DNA_Crypton 389172 389720 225 + . . scaffold90 WUBlastX DNA_Crypton 389604 389783 96 + . . scaffold90 WUBlastX DNA_Crypton 389942 390325 190 + . . scaffold90 WUBlastX DNA_hAT-hATw 391847 392524 144 + . . scaffold90 WUBlastX DNA_hAT-hATw 391919 392689 65 + . . scaffold90 WUBlastX LTR_Copia 394570 394668 29 - . . scaffold90 WUBlastX LTR_Gypsy 394856 396052 834 - . . scaffold90 WUBlastX LTR_Gypsy 395099 396442 180 - . . scaffold90 WUBlastX LTR_Gypsy 395444 396163 235 - . . scaffold90 WUBlastX DNA_hAT-Tip100 396842 397009 46 - . . scaffold90 WUBlastX DNA_hAT-Tip100? 397964 398032 45 - . . scaffold90 WUBlastX DNA_hAT-Tip100 398040 398618 42 - . . scaffold90 WUBlastX DNA_hAT-Tip100 398724 398954 128 - . . scaffold90 WUBlastX DNA_hAT-Tip100? 399174 399788 224 - . . scaffold90 WUBlastX DNA_hAT-Tip100 399186 399938 110 - . . scaffold90 WUBlastX DNA_hAT-Tip100 399186 399707 258 - . . scaffold90 WUBlastX DNA_hAT-Tip100 399715 400035 56 - . . scaffold90 GLEAN promoter 400056 401055 0.756327 - . ID=CGI_10015174; scaffold90 WUBlastX DNA_hAT-Charlie 400221 400283 31 - . . scaffold900 WUBlastX LINE_RTE-BovB 3 305 351 - . . scaffold900 WUBlastX LINE_RTE-BovB 868 1827 1140 - . . scaffold900 WUBlastX LINE_RTE-BovB 2233 3234 1213 + . . scaffold900 GLEAN mRNA 6516 8519 0.965908 - . ID=CGI_10000861; scaffold900 GLEAN promoter 8520 9519 0.965908 - . ID=CGI_10000861; scaffold903 GLEAN mRNA 2551 4991 1 - . ID=CGI_10000389; scaffold903 GLEAN promoter 4992 5003 1 - . ID=CGI_10000389; scaffold905 TRF Tandem_Repeat 408 497 128 + . . scaffold905 WUBlastX LINE_RTE-X 531 695 73 + . . scaffold905 GLEAN promoter 2174 3173 0.840832 + . ID=CGI_10004338; scaffold905 GLEAN mRNA 3174 14725 0.840832 + . ID=CGI_10004338; scaffold905 WUBlastX LINE_L1-Tx1 3570 3725 31 + . . scaffold905 WUBlastX LINE_R2 3747 3902 22 + . . scaffold905 WUBlastX LINE_L1-Tx1 4527 4946 83 + . . scaffold905 WUBlastX LINE_L1 4707 4940 116 + . . scaffold905 WUBlastX LINE_L1 4952 5833 87 + . . scaffold905 WUBlastX LINE_L1-Tx1 4952 5692 304 + . . scaffold905 WUBlastX LINE_L1 5787 6419 30 + . . scaffold905 WUBlastX LINE_L1-Tx1 5805 5924 38 + . . scaffold905 WUBlastX LINE_L2 19624 19803 28 - . . scaffold905 WUBlastX LINE_L2 19759 19842 20 - . . scaffold905 WUBlastX LINE_L2 20015 20347 126 - . . scaffold905 WUBlastX LINE_L2 20120 20347 148 - . . scaffold905 WUBlastX LINE_L2 20138 20473 64 - . . scaffold905 GLEAN mRNA 23974 29093 0.761624 - . ID=CGI_10004339; scaffold905 GLEAN promoter 29094 30093 0.761624 - . ID=CGI_10004339; scaffold905 WUBlastX LINE_L1-Tx1 35444 36142 397 + . . scaffold905 WUBlastX LINE_L1-Tx1 36186 36878 167 + . . scaffold905 WUBlastX LINE_L1-Tx1 36231 37046 98 + . . scaffold905 TRF Tandem_Repeat 37174 37235 124 + . . scaffold905 GLEAN promoter 37982 38981 0.946748 + . ID=CGI_10004340; scaffold905 GLEAN mRNA 38982 43600 0.946748 + . ID=CGI_10004340; scaffold905 TRF Tandem_Repeat 44981 45012 64 + . . scaffold905 WUBlastX LINE_Penelope 61255 61860 87 - . . scaffold905 TRF Tandem_Repeat 66275 66377 199 + . . scaffold905 TRF Tandem_Repeat 92988 93838 1195 + . . scaffold907 WUBlastX LINE_CR1 5124 5156 22 + . . scaffold907 WUBlastX LINE_CR1 5414 5518 42 + . . scaffold907 WUBlastX LINE_CR1 5529 5687 43 + . . scaffold907 WUBlastX LINE_CR1 5720 5914 41 + . . scaffold907 WUBlastX LINE_CR1 5729 6472 39 + . . scaffold907 WUBlastX LINE_CR1 5753 6334 75 + . . scaffold907 GLEAN promoter 11639 12638 0.44891 + . ID=CGI_10003557; scaffold907 WUBlastX LTR_Pao 11841 12215 65 + . . scaffold907 WUBlastX LTR_Pao 11847 12314 33 + . . scaffold907 GLEAN mRNA 12639 12941 0.44891 + . ID=CGI_10003557; scaffold907 WUBlastX LTR_Pao 12758 12862 22 + . . scaffold907 WUBlastX LINE_CR1-L2 14152 14358 92 + . . scaffold907 WUBlastX LINE_CR1-L2 14155 14460 51 + . . scaffold907 WUBlastX LINE_L2 14393 14680 33 + . . scaffold907 WUBlastX LINE_L2 14729 14962 35 + . . scaffold907 TRF Tandem_Repeat 15370 15415 60 + . . scaffold907 TRF Tandem_Repeat 15370 15411 54 + . . scaffold907 GLEAN mRNA 20222 20742 0.992667 - . ID=CGI_10003559; scaffold907 GLEAN promoter 20743 21742 0.992667 - . ID=CGI_10003559; scaffold907 TRF Tandem_Repeat 71722 71757 54 + . . scaffold908 TRF Tandem_Repeat 13296 13325 51 + . . scaffold908 TRF Tandem_Repeat 26649 26698 66 + . . scaffold908 WUBlastX DNA_IS4EU 34172 34837 161 + . . scaffold908 WUBlastX DNA_IS4EU 34277 34861 263 + . . scaffold908 WUBlastX DNA_IS4EU 35673 36254 246 - . . scaffold908 WUBlastX DNA_IS4EU 36106 36663 76 - . . scaffold908 WUBlastX DNA_Kolobok-IS4 36175 36453 106 - . . scaffold908 WUBlastX DNA_IS4EU 36196 36570 104 - . . scaffold908 TRF Tandem_Repeat 37025 37210 372 + . . scaffold908 GLEAN mRNA 38507 44215 0.992071 - . ID=CGI_10013126; scaffold908 TRF Tandem_Repeat 40262 40416 87 + . . scaffold908 TRF Tandem_Repeat 40262 40377 160 + . . scaffold908 GLEAN promoter 44216 45215 0.992071 - . ID=CGI_10013126; scaffold908 TRF Tandem_Repeat 49723 49860 267 + . . scaffold908 GLEAN mRNA 50348 55502 0.998196 - . ID=CGI_10013127; scaffold908 TRF Tandem_Repeat 52163 52232 124 + . . scaffold908 TRF Tandem_Repeat 53086 53113 56 + . . scaffold908 GLEAN promoter 55503 56502 0.998196 - . ID=CGI_10013127; scaffold908 GLEAN mRNA 56664 69523 0.849772 - . ID=CGI_10013128; scaffold908 TRF Tandem_Repeat 62327 62385 118 + . . scaffold908 TRF Tandem_Repeat 65808 65877 61 + . . scaffold908 TRF Tandem_Repeat 66843 66895 106 + . . scaffold908 TRF Tandem_Repeat 67204 67238 70 + . . scaffold908 GLEAN promoter 69524 70523 0.849772 - . ID=CGI_10013128; scaffold908 TRF Tandem_Repeat 69770 70295 241 + . . scaffold908 TRF Tandem_Repeat 70701 70767 116 + . . scaffold908 TRF Tandem_Repeat 73963 74003 82 + . . scaffold908 TRF Tandem_Repeat 74845 74911 61 + . . scaffold908 TRF Tandem_Repeat 76392 76438 94 + . . scaffold908 TRF Tandem_Repeat 76760 76794 61 + . . scaffold908 TRF Tandem_Repeat 76807 76887 162 + . . scaffold908 TRF Tandem_Repeat 77411 77767 567 + . . scaffold908 TRF Tandem_Repeat 77411 78639 1476 + . . scaffold908 TRF Tandem_Repeat 77411 78639 1476 + . . scaffold908 TRF Tandem_Repeat 77773 78639 969 + . . scaffold908 TRF Tandem_Repeat 81731 81763 57 + . . scaffold908 TRF Tandem_Repeat 83099 83161 126 + . . scaffold908 TRF Tandem_Repeat 83611 83647 51 + . . scaffold908 TRF Tandem_Repeat 84555 85892 1230 + . . scaffold908 TRF Tandem_Repeat 84555 85894 1553 + . . scaffold908 TRF Tandem_Repeat 86909 87419 720 + . . scaffold908 GLEAN mRNA 87759 94669 0.997996 - . ID=CGI_10013129; scaffold908 TRF Tandem_Repeat 89402 90242 944 + . . scaffold908 TRF Tandem_Repeat 89402 90242 880 + . . scaffold908 GLEAN promoter 94670 95669 0.997996 - . ID=CGI_10013129; scaffold908 TRF Tandem_Repeat 97612 97813 260 + . . scaffold908 GLEAN promoter 98440 99439 1 + . ID=CGI_10013130; scaffold908 GLEAN mRNA 99440 105892 1 + . ID=CGI_10013130; scaffold908 TRF Tandem_Repeat 100660 100716 114 + . . scaffold908 GLEAN promoter 105608 106607 0.99149 + . ID=CGI_10013131; scaffold908 TRF Tandem_Repeat 106401 106580 156 + . . scaffold908 GLEAN mRNA 106608 110396 0.99149 + . ID=CGI_10013131; scaffold908 TRF Tandem_Repeat 109482 110044 650 + . . scaffold908 GLEAN promoter 114834 115833 0.999999 + . ID=CGI_10013132; scaffold908 GLEAN mRNA 115834 120539 0.999999 + . ID=CGI_10013132; scaffold908 TRF Tandem_Repeat 116871 117140 434 + . . scaffold908 TRF Tandem_Repeat 119105 119880 1282 + . . scaffold908 GLEAN promoter 120298 121297 0.990126 + . ID=CGI_10013133; scaffold908 GLEAN mRNA 121298 147559 0.990126 + . ID=CGI_10013133; scaffold908 TRF Tandem_Repeat 132191 132494 310 + . . scaffold908 TRF Tandem_Repeat 132809 133267 376 + . . scaffold908 TRF Tandem_Repeat 142542 142603 90 + . . scaffold908 GLEAN promoter 158753 159752 0.997734 + . ID=CGI_10013134; scaffold908 GLEAN mRNA 159753 199904 0.997734 + . ID=CGI_10013134; scaffold908 TRF Tandem_Repeat 186136 186173 76 + . . scaffold908 TRF Tandem_Repeat 194381 194587 215 + . . scaffold908 TRF Tandem_Repeat 194422 194588 88 + . . scaffold908 TRF Tandem_Repeat 194422 194610 207 + . . scaffold908 TRF Tandem_Repeat 194475 194587 61 + . . scaffold908 TRF Tandem_Repeat 194722 194925 60 + . . scaffold908 GLEAN promoter 199144 200143 0.392203 + . ID=CGI_10013135; scaffold908 GLEAN mRNA 200144 216758 0.392203 + . ID=CGI_10013135; scaffold908 TRF Tandem_Repeat 208033 208090 98 + . . scaffold908 GLEAN promoter 220156 221155 0.998504 + . ID=CGI_10013136; scaffold908 WUBlastX LINE_RTE-BovB 220250 220363 64 + . . scaffold908 WUBlastX LINE_RTE-BovB 220365 220454 38 + . . scaffold908 WUBlastX LINE_RTE-BovB 220468 220554 21 + . . scaffold908 GLEAN mRNA 221156 222393 0.998504 + . ID=CGI_10013136; scaffold908 WUBlastX LINE_L1-Tx1 222648 223544 160 + . . scaffold908 TRF Tandem_Repeat 223689 223764 145 + . . scaffold908 TRF Tandem_Repeat 224536 224578 68 + . . scaffold908 TRF Tandem_Repeat 226018 226130 70 + . . scaffold908 GLEAN promoter 226724 227723 1 + . ID=CGI_10013137; scaffold908 GLEAN promoter 227428 228427 0.999376 + . ID=CGI_10013138; scaffold908 GLEAN mRNA 227724 228406 1 + . ID=CGI_10013137; scaffold908 GLEAN mRNA 228428 228799 0.999376 + . ID=CGI_10013138; scaffold908 GLEAN mRNA 231374 247645 0.999971 - . ID=CGI_10013139; scaffold908 TRF Tandem_Repeat 233772 234182 603 + . . scaffold908 TRF Tandem_Repeat 234399 234646 424 + . . scaffold908 TRF Tandem_Repeat 234399 234658 358 + . . scaffold908 GLEAN promoter 247646 248645 0.999971 - . ID=CGI_10013139; scaffold908 TRF Tandem_Repeat 250498 250589 57 + . . scaffold908 TRF Tandem_Repeat 255079 255130 104 + . . scaffold908 TRF Tandem_Repeat 255620 255663 88 + . . scaffold908 GLEAN promoter 256718 257717 0.385264 + . ID=CGI_10013140; scaffold908 GLEAN mRNA 257718 286082 0.385264 + . ID=CGI_10013140; scaffold908 TRF Tandem_Repeat 268756 268797 59 + . . scaffold908 TRF Tandem_Repeat 291656 291739 150 + . . scaffold908 GLEAN mRNA 294896 295897 1 - . ID=CGI_10013141; scaffold908 GLEAN promoter 295898 296897 1 - . ID=CGI_10013141; scaffold908 TRF Tandem_Repeat 297773 297810 67 + . . scaffold908 TRF Tandem_Repeat 297810 297845 72 + . . scaffold908 WUBlastX LTR_Ngaro 316900 318126 943 - . . scaffold908 WUBlastX LTR_Ngaro 318104 318601 152 - . . scaffold908 WUBlastX LTR_Ngaro 318720 319196 31 - . . scaffold908 TRF Tandem_Repeat 319531 320104 683 + . . scaffold908 TRF Tandem_Repeat 321136 321183 78 + . . scaffold908 WUBlastX DNA_IS4EU 340275 340457 44 + . . scaffold908 WUBlastX DNA_IS4EU 340356 340451 60 + . . scaffold908 WUBlastX DNA_IS4EU 340454 340630 36 + . . scaffold908 WUBlastX DNA_Kolobok-IS4 340496 340630 44 + . . scaffold908 TRF Tandem_Repeat 345987 346085 173 + . . scaffold908 TRF Tandem_Repeat 346134 346227 107 + . . scaffold908 TRF Tandem_Repeat 346414 346511 70 + . . scaffold91 GLEAN mRNA 273 16184 0.90295 - . ID=CGI_10004046; scaffold91 TRF Tandem_Repeat 9966 10002 74 + . . scaffold91 TRF Tandem_Repeat 14162 14432 335 + . . scaffold91 TRF Tandem_Repeat 14193 14433 412 + . . scaffold91 GLEAN promoter 16185 17184 0.90295 - . ID=CGI_10004046; scaffold91 TRF Tandem_Repeat 19808 20221 501 + . . scaffold91 TRF Tandem_Repeat 19808 20221 516 + . . scaffold91 TRF Tandem_Repeat 19875 19933 64 + . . scaffold91 TRF Tandem_Repeat 30773 30834 124 + . . scaffold91 TRF Tandem_Repeat 31389 31414 52 + . . scaffold91 GLEAN promoter 33895 34894 0.600032 + . ID=CGI_10004047; scaffold91 GLEAN mRNA 34895 38502 0.600032 + . ID=CGI_10004047; scaffold91 GLEAN mRNA 46311 46877 1 - . ID=CGI_10004048; scaffold91 GLEAN promoter 46878 47877 1 - . ID=CGI_10004048; scaffold91 WUBlastX LTR_Copia 47016 47171 25 - . . scaffold91 WUBlastX LTR_Gypsy-Cigr 47082 51038 1515 - . . scaffold91 WUBlastX LTR_Gypsy 50658 51194 36 - . . scaffold91 WUBlastX LTR_Gypsy 51152 51868 112 - . . scaffold91 TRF Tandem_Repeat 63551 63592 75 + . . scaffold91 WUBlastX DNA_TcMar-Marin 67666 67953 94 + . . scaffold91 WUBlastX DNA_TcMar-Marin 67858 68187 50 + . . scaffold910 GLEAN mRNA 428 9960 0.362147 - . ID=CGI_10004224; scaffold910 GLEAN promoter 8703 9702 0.528485 + . ID=CGI_10004225; scaffold910 GLEAN mRNA 9703 10836 0.528485 + . ID=CGI_10004225; scaffold910 GLEAN promoter 9961 10960 0.362147 - . ID=CGI_10004224; scaffold910 WUBlastX LINE_CR1-L2 21230 21298 25 - . . scaffold910 WUBlastX LINE_CR1-L2 21340 21660 52 - . . scaffold910 WUBlastX LINE_CR1-L2 21388 21657 91 - . . scaffold910 GLEAN promoter 23705 24704 0.618241 + . ID=CGI_10004226; scaffold910 GLEAN mRNA 24705 25025 0.618241 + . ID=CGI_10004226; scaffold910 WUBlastX DNA_TcMar-Tc1 27835 28506 245 + . . scaffold910 WUBlastX DNA_TcMar-Tc1 28529 28834 198 + . . scaffold910 TRF Tandem_Repeat 39476 39574 63 + . . scaffold910 TRF Tandem_Repeat 39478 39551 112 + . . scaffold910 TRF Tandem_Repeat 47918 47958 82 + . . scaffold910 TRF Tandem_Repeat 58692 58724 66 + . . scaffold910 GLEAN mRNA 59801 62116 0.999998 - . ID=CGI_10004227; scaffold910 GLEAN promoter 62117 63116 0.999998 - . ID=CGI_10004227; scaffold910 GLEAN mRNA 63048 71017 0.997072 - . ID=CGI_10004228; scaffold910 TRF Tandem_Repeat 63197 63231 70 + . . scaffold910 TRF Tandem_Repeat 63390 63424 70 + . . scaffold910 TRF Tandem_Repeat 67896 67966 142 + . . scaffold910 TRF Tandem_Repeat 69136 69229 152 + . . scaffold910 TRF Tandem_Repeat 70696 70843 152 + . . scaffold910 GLEAN promoter 71018 72017 0.997072 - . ID=CGI_10004228; scaffold910 TRF Tandem_Repeat 79269 79344 152 + . . scaffold911 TRF Tandem_Repeat 1 67 89 + . . scaffold911 GLEAN promoter 44444 45443 0.777767 + . ID=CGI_10012136; scaffold911 GLEAN mRNA 45444 46295 0.777767 + . ID=CGI_10012136; scaffold911 TRF Tandem_Repeat 51612 51667 76 + . . scaffold911 TRF Tandem_Repeat 90926 90978 61 + . . scaffold911 TRF Tandem_Repeat 92519 92564 83 + . . scaffold911 WUBlastX LTR_Gypsy 93260 93373 73 + . . scaffold911 GLEAN mRNA 93937 109355 0.543807 - . ID=CGI_10012137; scaffold911 WUBlastX LTR_Gypsy 94369 94521 82 + . . scaffold911 WUBlastX LTR_Gypsy 94523 94945 81 + . . scaffold911 WUBlastX LTR_Gypsy 94523 94864 116 + . . scaffold911 WUBlastX LTR_Gypsy 95018 95302 42 + . . scaffold911 WUBlastX LTR_Gypsy 95333 95608 47 + . . scaffold911 WUBlastX LTR_Gypsy 95333 95464 61 + . . scaffold911 WUBlastX LTR_Gypsy 95487 95957 44 + . . scaffold911 WUBlastX LTR_Gypsy 95611 95775 72 + . . scaffold911 WUBlastX LTR_Gypsy 95647 95775 98 + . . scaffold911 WUBlastX LTR_Gypsy 95656 95802 78 + . . scaffold911 WUBlastX LTR_Gypsy 95931 96014 49 + . . scaffold911 WUBlastX LTR_Gypsy 96907 97101 57 + . . scaffold911 WUBlastX LTR_Gypsy 96982 97110 101 + . . scaffold911 WUBlastX LTR_Gypsy 96985 97215 58 + . . scaffold911 WUBlastX LTR_Gypsy 96988 97161 86 + . . scaffold911 WUBlastX LTR_Gypsy 98128 98241 28 + . . scaffold911 WUBlastX LTR_Gypsy 98238 99245 280 + . . scaffold911 TRF Tandem_Repeat 102989 104193 1560 + . . scaffold911 TRF Tandem_Repeat 104352 104389 51 + . . scaffold911 WUBlastX DNA_hAT-Tip100 107736 108155 116 + . . scaffold911 WUBlastX DNA_hAT-Tip100 107817 108155 121 + . . scaffold911 WUBlastX DNA_hAT-Tip100 108499 108651 26 + . . scaffold911 WUBlastX DNA_hAT-Tip100 108812 109015 27 + . . scaffold911 WUBlastX DNA_hAT-Tip100 108840 108911 31 + . . scaffold911 GLEAN promoter 109356 110355 0.543807 - . ID=CGI_10012137; scaffold911 GLEAN mRNA 113243 114834 1 - . ID=CGI_10012138; scaffold911 WUBlastX DNA_Kolobok-Hyd 113744 113782 24 - . . scaffold911 WUBlastX DNA_Kolobok-Hyd 114322 114456 21 - . . scaffold911 GLEAN promoter 114835 115834 1 - . ID=CGI_10012138; scaffold911 GLEAN promoter 133790 134789 0.999999 + . ID=CGI_10012139; scaffold911 WUBlastX DNA_TcMar-Tc1 133893 134078 30 + . . scaffold911 GLEAN mRNA 134790 139968 0.999999 + . ID=CGI_10012139; scaffold911 GLEAN mRNA 140596 140793 0.999372 - . ID=CGI_10012140; scaffold911 GLEAN promoter 140794 141793 0.999372 - . ID=CGI_10012140; scaffold911 TRF Tandem_Repeat 143586 144550 1161 + . . scaffold911 WUBlastX DNA_hAT-Tip100 147168 147767 257 - . . scaffold911 GLEAN promoter 158613 159612 0.499121 + . ID=CGI_10012141; scaffold911 GLEAN mRNA 159613 170351 0.499121 + . ID=CGI_10012141; scaffold911 WUBlastX LINE_L1 161758 162033 20 - . . scaffold911 WUBlastX LINE_L1-Tx1 162390 162596 27 - . . scaffold911 WUBlastX LINE_L1 162770 163987 274 - . . scaffold911 GLEAN mRNA 166501 166986 1 - . ID=CGI_10012142; scaffold911 GLEAN promoter 166987 167986 1 - . ID=CGI_10012142; scaffold911 WUBlastX DNA_En-Spm 168791 169216 44 + . . scaffold911 WUBlastX DNA_En-Spm 168866 169216 64 + . . scaffold911 TRF Tandem_Repeat 168984 169013 60 + . . scaffold911 TRF Tandem_Repeat 170775 171593 1112 + . . scaffold911 GLEAN mRNA 175583 176653 0.993907 - . ID=CGI_10012143; scaffold911 GLEAN promoter 176654 177653 0.993907 - . ID=CGI_10012143; scaffold911 WUBlastX LINE_L2 181090 181674 97 - . . scaffold911 WUBlastX LINE_CR1-L2 181279 181626 110 - . . scaffold911 WUBlastX LINE_CR1-L2 181647 181694 51 - . . scaffold911 WUBlastX LINE_CR1 181653 181712 37 - . . scaffold911 WUBlastX LINE_L2 181700 181828 28 - . . scaffold911 WUBlastX LINE_Penelope 182955 183446 53 + . . scaffold911 WUBlastX LINE_Penelope 183039 183446 70 + . . scaffold911 TRF Tandem_Repeat 213094 213143 66 + . . scaffold911 TRF Tandem_Repeat 216665 216762 75 + . . scaffold911 TRF Tandem_Repeat 216674 216754 64 + . . scaffold911 TRF Tandem_Repeat 216690 216762 92 + . . scaffold911 TRF Tandem_Repeat 236538 236590 99 + . . scaffold911 TRF Tandem_Repeat 253479 253606 114 + . . scaffold911 TRF Tandem_Repeat 253527 253656 93 + . . scaffold911 TRF Tandem_Repeat 254945 257106 3200 + . . scaffold911 GLEAN mRNA 261522 273557 0.99909 - . ID=CGI_10012144; scaffold911 TRF Tandem_Repeat 266965 267023 59 + . . scaffold911 GLEAN promoter 272720 273719 1 + . ID=CGI_10012145; scaffold911 GLEAN promoter 273558 274557 0.99909 - . ID=CGI_10012144; scaffold911 GLEAN mRNA 273720 277812 1 + . ID=CGI_10012145; scaffold911 TRF Tandem_Repeat 275258 275310 106 + . . scaffold911 WUBlastX LINE_RTE-X 307954 308856 71 + . . scaffold911 WUBlastX LINE_RTE-X 308200 308856 96 + . . scaffold911 WUBlastX LINE_RTE-X 308308 308856 121 + . . scaffold911 WUBlastX LINE_RTE-X 308856 309668 438 + . . scaffold911 WUBlastX LINE_RTE-X 309677 309892 120 + . . scaffold911 WUBlastX LINE_RTE-X 309889 310476 137 + . . scaffold911 WUBlastX LINE_RTE-X 309889 310596 108 + . . scaffold912 TRF Tandem_Repeat 33913 33978 98 + . . scaffold912 GLEAN mRNA 34749 48869 0.492255 - . ID=CGI_10002926; scaffold912 TRF Tandem_Repeat 35749 35788 80 + . . scaffold912 WUBlastX LINE_L1-Tx1 36218 36430 92 - . . scaffold912 WUBlastX LINE_L1-Tx1 36263 36445 93 - . . scaffold912 WUBlastX LINE_L1 36314 36430 101 - . . scaffold912 TRF Tandem_Repeat 44521 44547 54 + . . scaffold912 GLEAN promoter 48870 49869 0.492255 - . ID=CGI_10002926; scaffold912 TRF Tandem_Repeat 50027 50076 100 + . . scaffold912 WUBlastX LINE_RTE-X 50496 51146 143 + . . scaffold912 WUBlastX LINE_RTE-X 50505 51026 149 + . . scaffold912 WUBlastX LINE_RTE-X 51128 52378 351 + . . scaffold912 WUBlastX LINE_RTE-X 51743 52378 402 + . . scaffold912 WUBlastX LINE_RTE-X 51743 52891 297 + . . scaffold912 WUBlastX LINE_R2 53008 53115 23 + . . scaffold912 WUBlastX LINE_RTE-X 53918 54238 45 + . . scaffold912 WUBlastX LINE_RTE-X 53981 54142 50 + . . scaffold912 WUBlastX LINE_RTE-X 54163 54282 29 + . . scaffold914 GLEAN promoter 11112 12111 0.937841 + . ID=CGI_10018865; scaffold914 GLEAN mRNA 12112 15301 0.937841 + . ID=CGI_10018865; scaffold914 TRF Tandem_Repeat 17798 17850 106 + . . scaffold914 GLEAN mRNA 19781 31292 0.576638 - . ID=CGI_10018866; scaffold914 GLEAN promoter 31293 32292 0.576638 - . ID=CGI_10018866; scaffold914 TRF Tandem_Repeat 37478 37812 625 + . . scaffold914 TRF Tandem_Repeat 46459 46492 68 + . . scaffold914 GLEAN mRNA 48635 53663 0.763159 - . ID=CGI_10018867; scaffold914 TRF Tandem_Repeat 49373 49478 97 + . . scaffold914 TRF Tandem_Repeat 49380 49477 141 + . . scaffold914 GLEAN promoter 53664 54663 0.763159 - . ID=CGI_10018867; scaffold914 WUBlastX LINE_RTE-X 55406 56443 241 + . . scaffold914 WUBlastX LINE_RTE-X 55610 56446 256 + . . scaffold914 TRF Tandem_Repeat 59071 59144 148 + . . scaffold914 TRF Tandem_Repeat 60302 60331 60 + . . scaffold914 GLEAN mRNA 67508 67909 0.999372 - . ID=CGI_10018868; scaffold914 GLEAN promoter 67910 68909 0.999372 - . ID=CGI_10018868; scaffold914 TRF Tandem_Repeat 68147 68234 72 + . . scaffold914 TRF Tandem_Repeat 68154 68226 103 + . . scaffold914 TRF Tandem_Repeat 71949 72000 104 + . . scaffold914 TRF Tandem_Repeat 85841 86883 1499 + . . scaffold914 TRF Tandem_Repeat 86414 86495 51 + . . scaffold914 TRF Tandem_Repeat 86751 86832 51 + . . scaffold914 TRF Tandem_Repeat 87605 87741 195 + . . scaffold914 GLEAN mRNA 88184 97389 0.999249 - . ID=CGI_10018870; scaffold914 GLEAN promoter 97390 98389 0.999249 - . ID=CGI_10018870; scaffold914 GLEAN promoter 100871 101870 1 + . ID=CGI_10018871; scaffold914 GLEAN mRNA 101871 107371 1 + . ID=CGI_10018871; scaffold914 TRF Tandem_Repeat 102058 102090 66 + . . scaffold914 TRF Tandem_Repeat 108290 108362 137 + . . scaffold914 TRF Tandem_Repeat 110616 110871 105 + . . scaffold914 GLEAN promoter 120330 121329 0.792808 + . ID=CGI_10018872; scaffold914 TRF Tandem_Repeat 121187 121329 205 + . . scaffold914 GLEAN mRNA 121330 140292 0.792808 + . ID=CGI_10018872; scaffold914 TRF Tandem_Repeat 124557 124586 60 + . . scaffold914 GLEAN mRNA 129519 141074 0.999351 - . ID=CGI_10018873; scaffold914 TRF Tandem_Repeat 138749 138790 84 + . . scaffold914 GLEAN promoter 141075 142074 0.999351 - . ID=CGI_10018873; scaffold914 TRF Tandem_Repeat 142122 142191 122 + . . scaffold914 TRF Tandem_Repeat 143112 144359 1157 + . . scaffold914 TRF Tandem_Repeat 145623 145987 358 + . . scaffold914 TRF Tandem_Repeat 145926 146047 115 + . . scaffold914 GLEAN mRNA 148092 153976 0.997642 - . ID=CGI_10018874; scaffold914 TRF Tandem_Repeat 152896 152940 63 + . . scaffold914 GLEAN promoter 153475 154474 0.998897 + . ID=CGI_10018875; scaffold914 GLEAN promoter 153977 154976 0.997642 - . ID=CGI_10018874; scaffold914 GLEAN mRNA 154475 169743 0.998897 + . ID=CGI_10018875; scaffold914 TRF Tandem_Repeat 161570 161626 107 + . . scaffold914 GLEAN mRNA 163077 165141 1 - . ID=CGI_10018876; scaffold914 GLEAN promoter 165142 166141 1 - . ID=CGI_10018876; scaffold914 GLEAN promoter 168756 169755 1 + . ID=CGI_10018877; scaffold914 GLEAN mRNA 169756 170567 1 + . ID=CGI_10018877; scaffold914 TRF Tandem_Repeat 169877 169920 88 + . . scaffold914 GLEAN promoter 171260 172259 1 + . ID=CGI_10018878; scaffold914 GLEAN mRNA 172260 180209 1 + . ID=CGI_10018878; scaffold914 TRF Tandem_Repeat 174064 174112 71 + . . scaffold914 TRF Tandem_Repeat 178399 178595 166 + . . scaffold914 TRF Tandem_Repeat 178491 179047 652 + . . scaffold914 TRF Tandem_Repeat 178491 179047 672 + . . scaffold914 TRF Tandem_Repeat 178572 179047 677 + . . scaffold914 GLEAN promoter 181066 182065 0.702385 + . ID=CGI_10018879; scaffold914 GLEAN mRNA 182066 185231 0.702385 + . ID=CGI_10018879; scaffold914 TRF Tandem_Repeat 182485 182856 464 + . . scaffold914 TRF Tandem_Repeat 189959 189983 50 + . . scaffold914 GLEAN promoter 192050 193049 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 192490 192523 68 + . . scaffold914 GLEAN mRNA 193050 211566 0.499097 + . ID=CGI_10018880; scaffold914 TRF Tandem_Repeat 193219 193274 112 + . . scaffold914 TRF Tandem_Repeat 193272 193302 53 + . . scaffold914 TRF Tandem_Repeat 194552 194691 81 + . . scaffold914 TRF Tandem_Repeat 194718 194911 138 + . . scaffold914 TRF Tandem_Repeat 202776 202817 84 + . . scaffold914 TRF Tandem_Repeat 203964 204008 90 + . . scaffold914 TRF Tandem_Repeat 209130 209161 64 + . . scaffold914 GLEAN mRNA 213087 232241 0.813948 - . ID=CGI_10018881; scaffold914 TRF Tandem_Repeat 217976 218056 75 + . . scaffold914 TRF Tandem_Repeat 217982 218052 79 + . . scaffold914 GLEAN promoter 232242 233241 0.813948 - . ID=CGI_10018881; scaffold914 WUBlastX LINE_RTE-X 233033 233425 87 - . . scaffold914 WUBlastX LINE_RTE-X 233081 233296 97 - . . scaffold914 GLEAN promoter 243187 244186 1 + . ID=CGI_10018882; scaffold914 GLEAN mRNA 244187 249695 1 + . ID=CGI_10018882; scaffold914 GLEAN promoter 254125 255124 0.997448 + . ID=CGI_10018883; scaffold914 GLEAN mRNA 255125 272585 0.997448 + . ID=CGI_10018883; scaffold914 WUBlastX DNA_TcMar-Tc1 256049 256747 210 - . . scaffold914 WUBlastX DNA_TcMar-Tc1 256049 256633 262 - . . scaffold914 WUBlastX DNA_TcMar-Tc1 256668 257072 120 - . . scaffold914 TRF Tandem_Repeat 264623 264699 147 + . . scaffold914 TRF Tandem_Repeat 270306 270586 244 + . . scaffold914 TRF Tandem_Repeat 270954 271254 136 + . . scaffold914 TRF Tandem_Repeat 270954 271234 218 + . . scaffold914 GLEAN mRNA 277058 280546 0.98923 - . ID=CGI_10018884; scaffold914 GLEAN promoter 280487 281486 1 + . ID=CGI_10018885; scaffold914 GLEAN promoter 280547 281546 0.98923 - . ID=CGI_10018884; scaffold914 GLEAN mRNA 281487 289287 1 + . ID=CGI_10018885; scaffold914 TRF Tandem_Repeat 286914 286941 56 + . . scaffold914 TRF Tandem_Repeat 290504 291446 1356 + . . scaffold914 GLEAN mRNA 293704 305044 0.999676 - . ID=CGI_10018886; scaffold914 GLEAN promoter 304765 305764 0.325587 + . ID=CGI_10018887; scaffold914 GLEAN promoter 305045 306044 0.999676 - . ID=CGI_10018886; scaffold914 GLEAN mRNA 305765 319073 0.325587 + . ID=CGI_10018887; scaffold914 TRF Tandem_Repeat 309292 309468 192 + . . scaffold914 TRF Tandem_Repeat 312477 312508 55 + . . scaffold914 TRF Tandem_Repeat 312620 313367 948 + . . scaffold914 TRF Tandem_Repeat 315112 315177 107 + . . scaffold914 TRF Tandem_Repeat 315113 315174 63 + . . scaffold914 TRF Tandem_Repeat 315119 315177 82 + . . scaffold914 TRF Tandem_Repeat 319213 319247 63 + . . scaffold914 TRF Tandem_Repeat 322075 322106 64 + . . scaffold914 WUBlastX RC_Helitron 325370 325663 41 + . . scaffold914 WUBlastX RC_Helitron 325514 328345 1637 + . . scaffold914 TRF Tandem_Repeat 340829 340863 70 + . . scaffold914 GLEAN mRNA 346765 348401 1 - . ID=CGI_10018888; scaffold914 GLEAN promoter 348402 349401 1 - . ID=CGI_10018888; scaffold914 TRF Tandem_Repeat 355631 355676 92 + . . scaffold914 TRF Tandem_Repeat 362366 362466 150 + . . scaffold914 WUBlastX LINE_RTE-X 362706 363104 49 - . . scaffold914 WUBlastX LTR_Ngaro 363308 363931 230 - . . scaffold914 WUBlastX LTR_Ngaro 363308 364057 133 - . . scaffold914 WUBlastX LTR_Ngaro 363973 364296 49 - . . scaffold914 WUBlastX LTR_Ngaro 364215 364529 149 - . . scaffold914 WUBlastX LTR_Ngaro 364573 365733 444 - . . scaffold914 WUBlastX LTR_Ngaro 365711 365824 84 - . . scaffold914 WUBlastX LTR_Ngaro 365946 366497 98 - . . scaffold914 WUBlastX LTR_Ngaro 366072 366548 200 - . . scaffold914 WUBlastX LTR_Ngaro 366087 366809 168 - . . scaffold914 TRF Tandem_Repeat 368442 368510 68 + . . scaffold914 GLEAN mRNA 373490 383298 0.989218 - . ID=CGI_10018889; scaffold914 TRF Tandem_Repeat 376862 377817 1359 + . . scaffold914 TRF Tandem_Repeat 377852 377891 62 + . . scaffold914 GLEAN promoter 383299 384298 0.989218 - . ID=CGI_10018889; scaffold914 GLEAN mRNA 383322 392651 0.969071 - . ID=CGI_10018890; scaffold914 WUBlastX LINE_L2 384308 385525 57 + . . scaffold914 WUBlastX LINE_CR1 384548 385525 406 + . . scaffold914 WUBlastX LINE_CR1 386245 386994 625 + . . scaffold914 WUBlastX LINE_CR1 386960 387151 70 + . . scaffold914 WUBlastX LINE_L2 387077 387169 22 + . . scaffold914 GLEAN promoter 392652 393651 0.969071 - . ID=CGI_10018890; scaffold914 GLEAN promoter 392661 393660 0.855447 + . ID=CGI_10018891; scaffold914 GLEAN mRNA 393661 417864 0.855447 + . ID=CGI_10018891; scaffold914 TRF Tandem_Repeat 395073 395129 114 + . . scaffold914 TRF Tandem_Repeat 418587 418616 60 + . . scaffold914 GLEAN mRNA 419913 427334 0.959662 - . ID=CGI_10018892; scaffold914 TRF Tandem_Repeat 423662 424125 423 + . . scaffold914 TRF Tandem_Repeat 423693 424125 372 + . . scaffold914 TRF Tandem_Repeat 423800 423913 74 + . . scaffold914 TRF Tandem_Repeat 424581 424627 94 + . . scaffold914 GLEAN promoter 427335 428334 0.959662 - . ID=CGI_10018892; scaffold914 TRF Tandem_Repeat 429113 430158 1459 + . . scaffold914 TRF Tandem_Repeat 432548 432644 72 + . . scaffold914 TRF Tandem_Repeat 432670 432872 129 + . . scaffold914 TRF Tandem_Repeat 440494 440711 211 + . . scaffold914 TRF Tandem_Repeat 440524 440711 225 + . . scaffold914 TRF Tandem_Repeat 440710 440930 137 + . . scaffold914 TRF Tandem_Repeat 440742 440930 191 + . . scaffold914 GLEAN promoter 446345 447344 0.999331 + . ID=CGI_10018893; scaffold914 GLEAN mRNA 447345 465593 0.999331 + . ID=CGI_10018893; scaffold914 TRF Tandem_Repeat 450572 450941 641 + . . scaffold914 TRF Tandem_Repeat 454891 454935 90 + . . scaffold914 TRF Tandem_Repeat 462578 463489 1488 + . . scaffold914 TRF Tandem_Repeat 463662 463714 74 + . . scaffold914 GLEAN mRNA 471764 472578 0.999676 - . ID=CGI_10018894; scaffold914 GLEAN promoter 472579 473578 0.999676 - . ID=CGI_10018894; scaffold914 GLEAN mRNA 477091 482217 1 - . ID=CGI_10018895; scaffold914 GLEAN promoter 482218 483217 1 - . ID=CGI_10018895; scaffold914 TRF Tandem_Repeat 485265 485969 966 + . . scaffold914 WUBlastX LINE_L1 492976 493296 41 + . . scaffold914 WUBlastX DNA_Harbinger 495331 495459 34 + . . scaffold914 WUBlastX DNA_Harbinger 495880 496107 42 + . . scaffold914 GLEAN promoter 497165 498164 0.962392 + . ID=CGI_10018896; scaffold914 GLEAN mRNA 498165 498638 0.962392 + . ID=CGI_10018896; scaffold914 TRF Tandem_Repeat 499771 499795 50 + . . scaffold914 GLEAN mRNA 502063 513024 0.981487 - . ID=CGI_10018897; scaffold914 GLEAN promoter 508091 509090 0.531613 + . ID=CGI_10018898; scaffold914 GLEAN mRNA 509091 510758 0.531613 + . ID=CGI_10018898; scaffold914 GLEAN promoter 513025 514024 0.981487 - . ID=CGI_10018897; scaffold914 TRF Tandem_Repeat 514335 514454 102 + . . scaffold914 GLEAN promoter 519845 520844 0.83569 + . ID=CGI_10018899; scaffold914 GLEAN mRNA 520845 526498 0.83569 + . ID=CGI_10018899; scaffold914 GLEAN mRNA 532013 549331 0.999675 - . ID=CGI_10018900; scaffold914 TRF Tandem_Repeat 537475 537556 56 + . . scaffold914 TRF Tandem_Repeat 537588 537662 51 + . . scaffold914 TRF Tandem_Repeat 540444 540488 90 + . . scaffold914 TRF Tandem_Repeat 541394 542159 998 + . . scaffold914 GLEAN promoter 549332 550331 0.999675 - . ID=CGI_10018900; scaffold914 GLEAN promoter 555095 556094 0.736428 + . ID=CGI_10018902; scaffold914 GLEAN mRNA 556091 556396 0.618186 - . ID=CGI_10018901; scaffold914 GLEAN mRNA 556095 565801 0.736428 + . ID=CGI_10018902; scaffold914 GLEAN promoter 556397 557396 0.618186 - . ID=CGI_10018901; scaffold914 TRF Tandem_Repeat 558633 558669 56 + . . scaffold914 TRF Tandem_Repeat 561475 561552 149 + . . scaffold914 TRF Tandem_Repeat 563525 563820 457 + . . scaffold914 GLEAN promoter 570342 571341 0.999997 + . ID=CGI_10018903; scaffold914 GLEAN mRNA 571342 573982 0.999997 + . ID=CGI_10018903; scaffold914 WUBlastX LINE_RTE-X 572975 573190 40 - . . scaffold915 GLEAN promoter 98 1097 1 + . ID=CGI_10001377; scaffold915 GLEAN mRNA 1098 5827 1 + . ID=CGI_10001377; scaffold915 GLEAN promoter 9184 10183 0.593238 + . ID=CGI_10001378; scaffold915 GLEAN mRNA 10184 10537 0.593238 + . ID=CGI_10001378; scaffold916 GLEAN promoter 5182 6181 0.59015 + . ID=CGI_10009050; scaffold916 GLEAN mRNA 6182 6553 0.59015 + . ID=CGI_10009050; scaffold916 GLEAN mRNA 9037 12199 1 - . ID=CGI_10009051; scaffold916 GLEAN promoter 12200 13199 1 - . ID=CGI_10009051; scaffold916 GLEAN promoter 13733 14732 0.996198 + . ID=CGI_10009052; scaffold916 GLEAN mRNA 14733 16385 0.996198 + . ID=CGI_10009052; scaffold916 GLEAN promoter 16798 17797 0.995132 + . ID=CGI_10009053; scaffold916 TRF Tandem_Repeat 17362 17387 52 + . . scaffold916 GLEAN mRNA 17798 18676 0.995132 + . ID=CGI_10009053; scaffold916 TRF Tandem_Repeat 21212 21241 60 + . . scaffold916 TRF Tandem_Repeat 22812 23665 1297 + . . scaffold916 GLEAN mRNA 24000 28564 0.98039 - . ID=CGI_10009054; scaffold916 GLEAN promoter 28565 29564 0.98039 - . ID=CGI_10009054; scaffold916 GLEAN mRNA 30698 38266 1 - . ID=CGI_10009055; scaffold916 GLEAN promoter 32463 33462 1 + . ID=CGI_10009056; scaffold916 TRF Tandem_Repeat 32569 33320 637 + . . scaffold916 GLEAN mRNA 33463 44191 1 + . ID=CGI_10009056; scaffold916 GLEAN promoter 38267 39266 1 - . ID=CGI_10009055; scaffold916 TRF Tandem_Repeat 65525 65802 421 + . . scaffold916 WUBlastX LINE_RTE-X 71231 71317 51 - . . scaffold916 WUBlastX LINE_RTE-X 72401 72757 107 - . . scaffold916 WUBlastX LINE_RTE-X 72569 72757 142 - . . scaffold916 WUBlastX LINE_RTE-X 72593 72796 85 - . . scaffold916 WUBlastX LINE_RTE-X 72792 73103 67 - . . scaffold916 WUBlastX LINE_RTE-X 72792 72986 81 - . . scaffold916 WUBlastX LINE_RTE-X 73905 73997 23 - . . scaffold916 WUBlastX LINE_RTE-X 73905 74069 21 - . . scaffold916 WUBlastX LINE_L2 77049 77252 38 + . . scaffold916 WUBlastX LINE_CR1 77054 77416 21 + . . scaffold916 WUBlastX LINE_Jockey 77517 77828 50 + . . scaffold916 WUBlastX LINE_CR1-L2 77848 78159 38 + . . scaffold916 WUBlastX LINE_CR1-L2 77944 78195 54 + . . scaffold916 GLEAN promoter 78945 79944 0.917511 + . ID=CGI_10009057; scaffold916 GLEAN mRNA 79945 81707 0.917511 + . ID=CGI_10009057; scaffold916 TRF Tandem_Repeat 83255 83283 58 + . . scaffold916 TRF Tandem_Repeat 93716 93877 138 + . . scaffold916 TRF Tandem_Repeat 94059 94223 102 + . . scaffold916 GLEAN promoter 99719 100718 0.650912 + . ID=CGI_10009058; scaffold916 GLEAN mRNA 100719 102699 0.650912 + . ID=CGI_10009058; scaffold916 GLEAN promoter 118587 119586 1 + . ID=CGI_10009059; scaffold916 GLEAN mRNA 119587 124563 1 + . ID=CGI_10009059; scaffold916 WUBlastX LINE_CR1-L2 125849 126718 60 + . . scaffold916 WUBlastX LINE_CR1-L2 126065 126604 76 + . . scaffold916 WUBlastX LINE_CR1-L2 126065 126379 80 + . . scaffold916 WUBlastX LINE_L2 126095 126718 72 + . . scaffold916 GLEAN promoter 128320 129319 1 + . ID=CGI_10009060; scaffold916 TRF Tandem_Repeat 128939 128978 57 + . . scaffold916 GLEAN mRNA 129320 137370 1 + . ID=CGI_10009060; scaffold916 TRF Tandem_Repeat 134985 135164 252 + . . scaffold916 TRF Tandem_Repeat 139967 139996 60 + . . scaffold916 TRF Tandem_Repeat 139996 140042 76 + . . scaffold916 TRF Tandem_Repeat 145197 145507 360 + . . scaffold916 GLEAN mRNA 153087 155256 1 - . ID=CGI_10009061; scaffold916 GLEAN promoter 155257 156256 1 - . ID=CGI_10009061; scaffold916 GLEAN mRNA 164231 166855 0.980379 - . ID=CGI_10009062; scaffold916 GLEAN promoter 166856 167855 0.980379 - . ID=CGI_10009062; scaffold916 TRF Tandem_Repeat 168129 168380 189 + . . scaffold916 TRF Tandem_Repeat 168789 168842 108 + . . scaffold916 TRF Tandem_Repeat 168840 168879 80 + . . scaffold916 TRF Tandem_Repeat 168974 169028 110 + . . scaffold916 WUBlastX LINE_RTE-BovB 220069 220593 31 - . . scaffold916 WUBlastX LINE_RTE-BovB 220749 220874 28 - . . scaffold917 GLEAN promoter 1 987 0.999675 + . ID=CGI_10011080; scaffold917 GLEAN mRNA 988 14346 0.999675 + . ID=CGI_10011080; scaffold917 GLEAN mRNA 2328 9580 0.911812 - . ID=CGI_10011081; scaffold917 GLEAN promoter 9581 10580 0.911812 - . ID=CGI_10011081; scaffold917 GLEAN promoter 21375 22374 0.98965 + . ID=CGI_10011082; scaffold917 GLEAN mRNA 22375 28537 0.98965 + . ID=CGI_10011082; scaffold917 TRF Tandem_Repeat 23457 23503 94 + . . scaffold917 TRF Tandem_Repeat 26392 26432 82 + . . scaffold917 TRF Tandem_Repeat 27448 27479 55 + . . scaffold917 TRF Tandem_Repeat 54251 54318 93 + . . scaffold917 WUBlastX LTR_DIRS 58054 58413 156 - . . scaffold917 WUBlastX LTR_DIRS 58458 58946 80 - . . scaffold917 WUBlastX LINE_L2 91468 91989 34 - . . scaffold917 WUBlastX LINE_CR1-L2 91553 92557 199 - . . scaffold917 WUBlastX LINE_L2 91853 92560 272 - . . scaffold917 WUBlastX LINE_CR1-L2 91979 92560 315 - . . scaffold917 WUBlastX LINE_L2 91997 92710 157 - . . scaffold917 WUBlastX LINE_L2 94266 94325 21 - . . scaffold917 WUBlastX LINE_CR1-L2 94568 95533 158 - . . scaffold917 TRF Tandem_Repeat 95675 95726 95 + . . scaffold917 WUBlastX LINE_L2 95737 96348 230 - . . scaffold917 WUBlastX LINE_CR1-L2 95737 96249 301 - . . scaffold917 TRF Tandem_Repeat 108194 108256 54 + . . scaffold917 TRF Tandem_Repeat 108204 108268 59 + . . scaffold917 TRF Tandem_Repeat 114541 114601 68 + . . scaffold917 TRF Tandem_Repeat 119158 119204 94 + . . scaffold917 GLEAN promoter 120193 121192 0.227919 + . ID=CGI_10011083; scaffold917 GLEAN mRNA 121193 151265 0.227919 + . ID=CGI_10011083; scaffold917 TRF Tandem_Repeat 122615 122640 52 + . . scaffold917 TRF Tandem_Repeat 132093 132138 83 + . . scaffold917 WUBlastX DNA_Sola 134339 134881 303 + . . scaffold917 WUBlastX DNA_Sola 135213 135728 155 + . . scaffold917 TRF Tandem_Repeat 136154 136428 252 + . . scaffold917 TRF Tandem_Repeat 141621 141839 368 + . . scaffold917 WUBlastX DNA_IS4EU 148533 148595 30 + . . scaffold917 WUBlastX DNA_IS4EU 148880 149065 98 + . . scaffold917 WUBlastX DNA_Kolobok-IS4 149169 149921 322 - . . scaffold917 GLEAN mRNA 150992 179733 0.207364 - . ID=CGI_10011084; scaffold917 TRF Tandem_Repeat 151304 151366 126 + . . scaffold917 WUBlastX DNA_Crypton 151372 151818 49 - . . scaffold917 WUBlastX DNA_Harbinger 154104 154217 122 + . . scaffold917 WUBlastX DNA_Harbinger 154430 154546 41 + . . scaffold917 WUBlastX DNA_Harbinger 154620 154829 134 + . . scaffold917 WUBlastX DNA_Harbinger 154683 154859 48 + . . scaffold917 WUBlastX DNA_Harbinger 155058 155315 21 + . . scaffold917 WUBlastX DNA_Harbinger 155076 155267 54 + . . scaffold917 WUBlastX LINE_L1 161916 162362 66 + . . scaffold917 WUBlastX LINE_CR1-L2 162075 162368 98 + . . scaffold917 WUBlastX LINE_L2 162383 162568 46 + . . scaffold917 TRF Tandem_Repeat 164060 164139 52 + . . scaffold917 TRF Tandem_Repeat 172677 172850 208 + . . scaffold917 WUBlastX LINE_RTE-X 175485 175619 34 - . . scaffold917 WUBlastX LINE_RTE-X 175652 175738 50 - . . scaffold917 TRF Tandem_Repeat 177161 177330 277 + . . scaffold917 TRF Tandem_Repeat 178895 178933 78 + . . scaffold917 WUBlastX DNA_Crypton 178939 179385 48 - . . scaffold917 GLEAN promoter 179734 180733 0.207364 - . ID=CGI_10011084; scaffold917 GLEAN mRNA 179783 180058 0.776794 - . ID=CGI_10011085; scaffold917 GLEAN promoter 180059 181058 0.776794 - . ID=CGI_10011085; scaffold917 GLEAN mRNA 182944 184384 0.999996 - . ID=CGI_10011086; scaffold917 GLEAN promoter 183969 184968 0.276773 + . ID=CGI_10011087; scaffold917 GLEAN promoter 184385 185384 0.999996 - . ID=CGI_10011086; scaffold917 GLEAN mRNA 184969 208943 0.276773 + . ID=CGI_10011087; scaffold917 TRF Tandem_Repeat 191593 192624 1411 + . . scaffold917 TRF Tandem_Repeat 198243 198536 516 + . . scaffold917 TRF Tandem_Repeat 203904 204183 261 + . . scaffold917 TRF Tandem_Repeat 204999 205055 114 + . . scaffold917 TRF Tandem_Repeat 205708 206089 665 + . . scaffold917 TRF Tandem_Repeat 207322 207655 507 + . . scaffold917 TRF Tandem_Repeat 208200 208251 52 + . . scaffold917 WUBlastX LTR_Gypsy 213970 214272 72 + . . scaffold917 TRF Tandem_Repeat 217013 217236 358 + . . scaffold917 GLEAN mRNA 217325 225630 1 - . ID=CGI_10011088; scaffold917 TRF Tandem_Repeat 217960 218290 527 + . . scaffold917 TRF Tandem_Repeat 219204 219707 796 + . . scaffold917 TRF Tandem_Repeat 219889 220585 465 + . . scaffold917 TRF Tandem_Repeat 219891 220095 304 + . . scaffold917 TRF Tandem_Repeat 222578 222625 89 + . . scaffold917 GLEAN promoter 224848 225847 0.69169 + . ID=CGI_10011089; scaffold917 GLEAN promoter 225631 226630 1 - . ID=CGI_10011088; scaffold917 GLEAN mRNA 225848 237180 0.69169 + . ID=CGI_10011089; scaffold917 WUBlastX LTR_DIRS? 243493 243603 80 - . . scaffold917 WUBlastX DNA_Harbinger 251652 252065 176 + . . scaffold917 TRF Tandem_Repeat 252223 252265 86 + . . scaffold917 GLEAN mRNA 259131 267876 0.993494 - . ID=CGI_10011090; scaffold917 GLEAN promoter 267877 268876 0.993494 - . ID=CGI_10011090; scaffold917 GLEAN promoter 268126 269125 1 + . ID=CGI_10011091; scaffold917 GLEAN mRNA 269126 275840 1 + . ID=CGI_10011091; scaffold917 TRF Tandem_Repeat 274649 274710 117 + . . scaffold919 GLEAN mRNA 2694 3967 1 - . ID=CGI_10003312; scaffold919 GLEAN promoter 3968 4967 1 - . ID=CGI_10003312; scaffold919 WUBlastX LINE_L1 14978 15694 202 - . . scaffold919 WUBlastX LINE_L1-Tx1 15098 15691 391 - . . scaffold919 WUBlastX LINE_L1-Tx1 15685 16041 215 - . . scaffold919 WUBlastX LINE_RTE-BovB 15685 16119 70 - . . scaffold919 WUBlastX LINE_L1-Tx1 16046 16189 33 - . . scaffold919 TRF Tandem_Repeat 16190 16229 62 + . . scaffold919 TRF Tandem_Repeat 16191 16246 58 + . . scaffold919 WUBlastX LINE_Jockey 16413 16571 33 - . . scaffold919 WUBlastX LINE_L1 16493 17860 113 - . . scaffold919 WUBlastX LINE_L1-Tx1 16793 17872 482 - . . scaffold919 WUBlastX LTR_Gypsy 18356 18406 24 + . . scaffold919 WUBlastX LTR_Gypsy 18365 19687 326 + . . scaffold919 WUBlastX LTR_Gypsy 18371 19255 335 + . . scaffold919 TRF Tandem_Repeat 20642 20700 109 + . . scaffold919 GLEAN mRNA 34669 43831 0.999289 - . ID=CGI_10003313; scaffold919 GLEAN promoter 43832 44831 0.999289 - . ID=CGI_10003313; scaffold919 WUBlastX DNA_Harbinger 44831 44902 41 - . . scaffold919 WUBlastX DNA_Harbinger 44905 45039 53 - . . scaffold919 WUBlastX DNA_Harbinger 44908 45015 93 - . . scaffold919 WUBlastX DNA_Harbinger 45154 45225 28 - . . scaffold919 TRF Tandem_Repeat 50240 50272 57 + . . scaffold919 WUBlastX LINE_R2 65658 66335 31 - . . scaffold919 WUBlastX LINE_R2 65766 66227 112 - . . scaffold919 WUBlastX LINE_RTE-BovB 66682 67281 125 + . . scaffold919 WUBlastX LINE_R2 66682 67128 241 + . . scaffold921 WUBlastX DNA_TcMar-Marin 522 710 67 + . . scaffold921 WUBlastX DNA_TcMar-Marin 712 789 30 + . . scaffold922 WUBlastX LINE_CR1 1103 1465 46 - . . scaffold922 WUBlastX LINE_CR1-L2 1220 1468 83 - . . scaffold922 WUBlastX LINE_CR1-L2 1271 1468 111 - . . scaffold922 WUBlastX LINE_CR1-L2 1271 1684 60 - . . scaffold922 WUBlastX LINE_CR1 1629 1967 65 - . . scaffold922 WUBlastX LINE_CR1-L2 1665 1907 97 - . . scaffold922 WUBlastX LINE_CR1-L2 1695 2048 56 - . . scaffold922 WUBlastX LINE_CR1 2138 2260 32 - . . scaffold922 WUBlastX LINE_CR1-L2 2147 2248 40 - . . scaffold922 WUBlastX LINE_L1 5065 5400 25 - . . scaffold922 WUBlastX LINE_L1 5358 6344 33 - . . scaffold922 WUBlastX LINE_L1-Tx1 5610 6374 180 - . . scaffold922 WUBlastX LINE_L1-Tx1 6374 7300 491 - . . scaffold922 WUBlastX LINE_L1 7282 7905 162 - . . scaffold922 WUBlastX LINE_L1-Tx1 7979 8161 39 - . . scaffold922 WUBlastX LINE_L1-Tx1 8190 8594 157 - . . scaffold922 GLEAN mRNA 8716 9099 0.998215 - . ID=CGI_10005659; scaffold922 GLEAN promoter 9100 10099 0.998215 - . ID=CGI_10005659; scaffold922 WUBlastX LINE_CR1 9292 10065 172 - . . scaffold922 TRF Tandem_Repeat 21519 21565 87 + . . scaffold922 GLEAN mRNA 22021 22227 0.999366 - . ID=CGI_10005660; scaffold922 GLEAN promoter 22228 23227 0.999366 - . ID=CGI_10005660; scaffold922 GLEAN mRNA 26443 42770 0.364166 - . ID=CGI_10005661; scaffold922 WUBlastX LINE_L2 31238 31417 60 - . . scaffold922 TRF Tandem_Repeat 38076 38168 170 + . . scaffold922 TRF Tandem_Repeat 38683 38730 96 + . . scaffold922 TRF Tandem_Repeat 40132 40216 129 + . . scaffold922 TRF Tandem_Repeat 40417 40450 59 + . . scaffold922 GLEAN promoter 42771 43770 0.364166 - . ID=CGI_10005661; scaffold922 TRF Tandem_Repeat 46649 46698 82 + . . scaffold922 TRF Tandem_Repeat 51316 51365 66 + . . scaffold922 TRF Tandem_Repeat 51316 51365 57 + . . scaffold922 TRF Tandem_Repeat 57636 57695 93 + . . scaffold922 TRF Tandem_Repeat 57637 57702 105 + . . scaffold922 GLEAN mRNA 65021 94381 0.690826 - . ID=CGI_10005662; scaffold922 TRF Tandem_Repeat 71642 71686 90 + . . scaffold922 TRF Tandem_Repeat 77465 77526 124 + . . scaffold922 WUBlastX LINE_CR1-L2 86966 87169 77 - . . scaffold922 WUBlastX LINE_CR1-L2 87005 87169 89 - . . scaffold922 WUBlastX DNA_Harbinger 93466 93876 71 - . . scaffold922 WUBlastX DNA_Harbinger 93484 94032 55 - . . scaffold922 GLEAN promoter 94382 95381 0.690826 - . ID=CGI_10005662; scaffold922 TRF Tandem_Repeat 95148 95175 56 + . . scaffold922 TRF Tandem_Repeat 106424 106476 106 + . . scaffold922 TRF Tandem_Repeat 106582 106889 485 + . . scaffold922 TRF Tandem_Repeat 107111 107141 62 + . . scaffold922 TRF Tandem_Repeat 113954 114253 446 + . . scaffold922 TRF Tandem_Repeat 122955 123001 94 + . . scaffold922 TRF Tandem_Repeat 123508 125367 2052 + . . scaffold922 TRF Tandem_Repeat 123534 125367 2044 + . . scaffold922 GLEAN promoter 124576 125575 0.5 + . ID=CGI_10005663; scaffold922 GLEAN mRNA 125576 130100 0.5 + . ID=CGI_10005663; scaffold923 TRF Tandem_Repeat 8640 8702 117 + . . scaffold923 TRF Tandem_Repeat 22307 22373 80 + . . scaffold923 TRF Tandem_Repeat 22307 22375 78 + . . scaffold923 TRF Tandem_Repeat 24452 24528 154 + . . scaffold923 TRF Tandem_Repeat 37117 37196 160 + . . scaffold923 WUBlastX LINE_RTE-X 38172 38366 53 + . . scaffold923 WUBlastX LINE_RTE-X 38202 38414 49 + . . scaffold923 WUBlastX LINE_RTE-X 38205 38474 22 + . . scaffold923 WUBlastX LINE_RTE-X 38205 38360 68 + . . scaffold923 TRF Tandem_Repeat 42886 42935 66 + . . scaffold923 GLEAN mRNA 43946 62487 0.776207 - . ID=CGI_10008128; scaffold923 TRF Tandem_Repeat 51965 52303 360 + . . scaffold923 TRF Tandem_Repeat 53734 53858 74 + . . scaffold923 TRF Tandem_Repeat 54634 54691 89 + . . scaffold923 TRF Tandem_Repeat 57659 57711 79 + . . scaffold923 GLEAN promoter 62488 63487 0.776207 - . ID=CGI_10008128; scaffold923 GLEAN promoter 65723 66722 0.999676 + . ID=CGI_10008129; scaffold923 GLEAN mRNA 66723 72525 0.999676 + . ID=CGI_10008129; scaffold923 TRF Tandem_Repeat 87229 87263 70 + . . scaffold923 TRF Tandem_Repeat 87294 87373 160 + . . scaffold923 TRF Tandem_Repeat 95830 96656 620 + . . scaffold923 TRF Tandem_Repeat 105425 105482 109 + . . scaffold923 TRF Tandem_Repeat 148157 148199 52 + . . scaffold923 GLEAN mRNA 149451 175345 0.695008 - . ID=CGI_10008130; scaffold923 TRF Tandem_Repeat 172274 172338 130 + . . scaffold923 GLEAN promoter 175346 176345 0.695008 - . ID=CGI_10008130; scaffold923 GLEAN mRNA 176042 186324 0.999662 - . ID=CGI_10008131; scaffold923 GLEAN promoter 186325 187324 0.999662 - . ID=CGI_10008131; scaffold923 GLEAN promoter 190058 191057 0.828112 + . ID=CGI_10008132; scaffold923 GLEAN mRNA 191058 192722 0.828112 + . ID=CGI_10008132; scaffold923 TRF Tandem_Repeat 197977 198010 59 + . . scaffold923 GLEAN mRNA 198563 200960 1 - . ID=CGI_10008133; scaffold923 GLEAN promoter 200961 201960 1 - . ID=CGI_10008133; scaffold924 TRF Tandem_Repeat 2047 2090 88 + . . scaffold924 TRF Tandem_Repeat 9760 9827 100 + . . scaffold924 TRF Tandem_Repeat 9760 9836 109 + . . scaffold924 TRF Tandem_Repeat 13189 13653 330 + . . scaffold924 TRF Tandem_Repeat 19546 19595 100 + . . scaffold924 TRF Tandem_Repeat 24345 24373 58 + . . scaffold924 GLEAN promoter 38924 39923 0.322694 + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 39477 40019 74 + . . scaffold924 WUBlastX DNA_Sola 39540 40133 48 + . . scaffold924 GLEAN mRNA 39924 42016 0.322694 + . ID=CGI_10006838; scaffold924 WUBlastX DNA_Sola 40732 40965 34 + . . scaffold924 TRF Tandem_Repeat 42125 42172 62 + . . scaffold924 WUBlastX LINE_RTE-X 69341 69814 29 - . . scaffold924 WUBlastX LTR_Ngaro 70105 70161 25 - . . scaffold924 WUBlastX LTR_Ngaro 70139 70789 108 - . . scaffold924 WUBlastX LTR_Ngaro 70582 71058 119 - . . scaffold924 WUBlastX LTR_Ngaro 70947 71705 456 - . . scaffold924 WUBlastX LTR_Ngaro 71940 72278 231 - . . scaffold924 TRF Tandem_Repeat 103330 103368 78 + . . scaffold924 WUBlastX LINE_L2 107163 107816 39 + . . scaffold924 WUBlastX LINE_RTE-X 107301 108425 435 + . . scaffold924 WUBlastX LINE_L1-Tx1 124829 125527 38 - . . scaffold924 WUBlastX LINE_L1-Tx1 124937 125518 92 - . . scaffold924 WUBlastX LINE_L1 125384 125560 27 - . . scaffold924 WUBlastX LINE_L1-Tx1 126027 126560 234 - . . scaffold924 WUBlastX LINE_L1-Tx1 126496 126915 138 - . . scaffold924 WUBlastX LINE_L1-Tx1 126652 126915 214 - . . scaffold924 WUBlastX LINE_L1 126661 126993 103 - . . scaffold924 WUBlastX LINE_L1 127011 127190 87 + . . scaffold924 WUBlastX LINE_L1 127048 127860 167 + . . scaffold924 WUBlastX LINE_L1-Tx1 127183 127860 296 + . . scaffold924 WUBlastX LINE_L1-Tx1 127865 128065 34 + . . scaffold924 WUBlastX LINE_L1-Tx1 128064 128336 124 + . . scaffold924 TRF Tandem_Repeat 129578 131041 1855 + . . scaffold924 TRF Tandem_Repeat 129578 131069 1880 + . . scaffold924 WUBlastX LINE_L1-Tx1 131310 131471 82 + . . scaffold924 WUBlastX LINE_L1-Tx1 131477 131551 27 + . . scaffold924 WUBlastX LINE_L1-Tx1 131483 131539 28 + . . scaffold924 WUBlastX DNA_IS4EU 134674 134940 132 - . . scaffold924 WUBlastX DNA_IS4EU 134942 135121 134 - . . scaffold924 WUBlastX LTR_Gypsy 134984 135679 352 - . . scaffold924 WUBlastX LTR_Gypsy 135134 135691 364 - . . scaffold924 WUBlastX LTR_Gypsy 135664 135711 24 - . . scaffold924 WUBlastX LTR_Gypsy 135706 136197 77 - . . scaffold924 WUBlastX LTR_Gypsy 135706 136098 232 - . . scaffold924 WUBlastX DNA_IS4EU 136232 136408 76 - . . scaffold924 WUBlastX LTR_Gypsy 136363 136446 33 - . . scaffold924 WUBlastX LTR_Pao 137668 137796 22 - . . scaffold924 WUBlastX LTR_Pao 138422 138679 29 - . . scaffold924 GLEAN mRNA 146769 147431 0.733459 - . ID=CGI_10006839; scaffold924 GLEAN promoter 147432 148431 0.733459 - . ID=CGI_10006839; scaffold924 TRF Tandem_Repeat 159024 159061 76 + . . scaffold924 TRF Tandem_Repeat 159445 159494 75 + . . scaffold924 TRF Tandem_Repeat 161331 161356 52 + . . scaffold925 TRF Tandem_Repeat 4884 4962 77 + . . scaffold925 TRF Tandem_Repeat 4884 4962 77 + . . scaffold925 TRF Tandem_Repeat 4884 4962 77 + . . scaffold925 TRF Tandem_Repeat 9840 9880 82 + . . scaffold925 GLEAN mRNA 10485 18876 0.999855 - . ID=CGI_10017408; scaffold925 GLEAN promoter 18877 19876 0.999855 - . ID=CGI_10017408; scaffold925 GLEAN mRNA 19099 20900 1 - . ID=CGI_10017409; scaffold925 TRF Tandem_Repeat 19617 19641 50 + . . scaffold925 GLEAN promoter 20901 21900 1 - . ID=CGI_10017409; scaffold925 GLEAN mRNA 20979 21158 0.733495 - . ID=CGI_10017410; scaffold925 GLEAN promoter 21159 22158 0.733495 - . ID=CGI_10017410; scaffold925 TRF Tandem_Repeat 25414 25590 171 + . . scaffold925 TRF Tandem_Repeat 33478 33544 89 + . . scaffold925 TRF Tandem_Repeat 56490 58345 2533 + . . scaffold925 WUBlastX LINE_L2 60330 61094 65 - . . scaffold925 WUBlastX RC_Helitron 60465 61106 213 - . . scaffold925 TRF Tandem_Repeat 64737 64770 68 + . . scaffold925 TRF Tandem_Repeat 84744 84799 105 + . . scaffold925 GLEAN promoter 88060 89059 0.942254 + . ID=CGI_10017411; scaffold925 GLEAN mRNA 89060 89524 0.942254 + . ID=CGI_10017411; scaffold925 TRF Tandem_Repeat 97646 97681 72 + . . scaffold925 TRF Tandem_Repeat 99457 99499 86 + . . scaffold925 TRF Tandem_Repeat 102718 102807 144 + . . scaffold925 TRF Tandem_Repeat 103438 103495 116 + . . scaffold925 TRF Tandem_Repeat 103495 103524 60 + . . scaffold925 TRF Tandem_Repeat 105004 105040 74 + . . scaffold925 TRF Tandem_Repeat 111574 111637 101 + . . scaffold925 TRF Tandem_Repeat 112076 112246 155 + . . scaffold925 TRF Tandem_Repeat 123855 123921 71 + . . scaffold925 GLEAN mRNA 124334 157225 0.393067 - . ID=CGI_10017412; scaffold925 WUBlastX LTR_Pao 127659 127994 52 + . . scaffold925 WUBlastX LTR_Pao 127719 128678 390 + . . scaffold925 WUBlastX LTR_Pao 128406 130037 628 + . . scaffold925 WUBlastX LTR_Pao 128706 131678 2481 + . . scaffold925 GLEAN promoter 131386 132385 0.998863 + . ID=CGI_10017413; scaffold925 GLEAN mRNA 132386 134107 0.998863 + . ID=CGI_10017413; scaffold925 WUBlastX LTR_DIRS 140016 140459 146 - . . scaffold925 WUBlastX LTR_DIRS 140354 141217 326 - . . scaffold925 WUBlastX LTR_DIRS 140537 141205 390 - . . scaffold925 WUBlastX LTR_DIRS 141226 142380 729 - . . scaffold925 WUBlastX LTR_Gypsy 141622 142515 137 - . . scaffold925 WUBlastX LTR_Gypsy 142660 142752 22 - . . scaffold925 GLEAN promoter 149224 150223 0.999661 + . ID=CGI_10017414; scaffold925 GLEAN mRNA 150224 151939 0.999661 + . ID=CGI_10017414; scaffold925 GLEAN promoter 157226 158225 0.393067 - . ID=CGI_10017412; scaffold925 GLEAN mRNA 159430 168214 0.646742 - . ID=CGI_10017415; scaffold925 GLEAN promoter 168121 169120 0.618241 + . ID=CGI_10017417; scaffold925 GLEAN promoter 168215 169214 0.646742 - . ID=CGI_10017415; scaffold925 GLEAN mRNA 169021 175816 0.647686 - . ID=CGI_10017416; scaffold925 GLEAN mRNA 169121 169375 0.618241 + . ID=CGI_10017417; scaffold925 TRF Tandem_Repeat 169681 170635 1130 + . . scaffold925 TRF Tandem_Repeat 169681 170635 1094 + . . scaffold925 TRF Tandem_Repeat 174741 174803 126 + . . scaffold925 TRF Tandem_Repeat 175003 175077 134 + . . scaffold925 GLEAN promoter 175817 176816 0.647686 - . ID=CGI_10017416; scaffold925 TRF Tandem_Repeat 180322 181207 1423 + . . scaffold925 TRF Tandem_Repeat 185220 185357 249 + . . scaffold925 GLEAN mRNA 185655 201680 0.878781 - . ID=CGI_10017418; scaffold925 TRF Tandem_Repeat 191014 191192 137 + . . scaffold925 WUBlastX LINE_L2 198795 199334 96 + . . scaffold925 WUBlastX LINE_RTE-X 198891 199361 168 + . . scaffold925 WUBlastX LINE_RTE-X 199011 199331 238 + . . scaffold925 WUBlastX LINE_RTE-X 199569 200096 83 + . . scaffold925 GLEAN promoter 201681 202680 0.878781 - . ID=CGI_10017418; scaffold925 GLEAN promoter 202778 203777 1 + . ID=CGI_10017419; scaffold925 GLEAN mRNA 203778 209303 1 + . ID=CGI_10017419; scaffold925 TRF Tandem_Repeat 210459 210503 90 + . . scaffold925 GLEAN promoter 223843 224842 0.810337 + . ID=CGI_10017420; scaffold925 WUBlastX LINE_CR1 223913 224593 243 + . . scaffold925 GLEAN mRNA 224843 231445 0.810337 + . ID=CGI_10017420; scaffold925 WUBlastX LINE_L1-Tx1 225354 225455 45 + . . scaffold925 WUBlastX LINE_L1-Tx1 225506 225646 78 + . . scaffold925 WUBlastX LINE_L1-Tx1 225639 225800 74 + . . scaffold925 TRF Tandem_Repeat 228857 228884 56 + . . scaffold925 GLEAN promoter 231303 232302 1 + . ID=CGI_10017421; scaffold925 GLEAN mRNA 232303 237491 1 + . ID=CGI_10017421; scaffold925 WUBlastX LINE_CR1 234954 235418 117 - . . scaffold925 GLEAN mRNA 245750 251543 0.996749 - . ID=CGI_10017422; scaffold925 WUBlastX LTR_Gypsy-Cigr 246439 249018 1667 - . . scaffold925 WUBlastX LTR_Gypsy-Cigr 249021 250142 402 - . . scaffold925 WUBlastX LTR_Gypsy 249021 250439 207 - . . scaffold925 WUBlastX LTR_Gypsy-Cigr 250398 251159 193 - . . scaffold925 GLEAN promoter 251544 252543 0.996749 - . ID=CGI_10017422; scaffold925 WUBlastX LTR_Gypsy 263446 265113 701 - . . scaffold925 WUBlastX LTR_Gypsy 263464 264381 736 - . . scaffold925 WUBlastX LTR_Gypsy 265089 265547 529 - . . scaffold925 GLEAN mRNA 265784 299058 0.996279 - . ID=CGI_10017423; scaffold925 TRF Tandem_Repeat 279893 279926 50 + . . scaffold925 WUBlastX DNA_Sola 280620 280835 85 + . . scaffold925 WUBlastX DNA_Sola 281938 282513 342 + . . scaffold925 WUBlastX DNA_Sola 282703 282954 45 + . . scaffold925 WUBlastX DNA_Sola 282772 282957 76 + . . scaffold925 WUBlastX DNA_Sola 283613 284236 163 + . . scaffold925 GLEAN promoter 288440 289439 0.544755 + . ID=CGI_10017424; scaffold925 GLEAN mRNA 289440 301712 0.544755 + . ID=CGI_10017424; scaffold925 TRF Tandem_Repeat 292010 292037 56 + . . scaffold925 TRF Tandem_Repeat 297798 297827 60 + . . scaffold925 GLEAN promoter 299059 300058 0.996279 - . ID=CGI_10017423; scaffold925 TRF Tandem_Repeat 315747 315795 62 + . . scaffold925 TRF Tandem_Repeat 344123 344293 164 + . . scaffold925 TRF Tandem_Repeat 344183 344293 168 + . . scaffold925 WUBlastX LINE_RTE-X 345058 345228 60 + . . scaffold925 GLEAN promoter 348738 349737 0.992655 + . ID=CGI_10017425; scaffold925 GLEAN mRNA 349738 351577 0.992655 + . ID=CGI_10017425; scaffold925 TRF Tandem_Repeat 359074 359147 148 + . . scaffold925 TRF Tandem_Repeat 363634 363705 56 + . . scaffold925 WUBlastX LINE_Penelope 365212 365346 62 - . . scaffold925 TRF Tandem_Repeat 366778 366841 101 + . . scaffold925 GLEAN promoter 367361 368360 0.521242 + . ID=CGI_10017426; scaffold925 GLEAN mRNA 368361 388516 0.521242 + . ID=CGI_10017426; scaffold925 TRF Tandem_Repeat 379223 379257 52 + . . scaffold925 TRF Tandem_Repeat 379696 379781 172 + . . scaffold925 WUBlastX LINE_RTE-X 379884 379952 21 + . . scaffold925 WUBlastX LINE_RTE-X 380209 380379 61 + . . scaffold925 WUBlastX LINE_RTE-X 380224 380361 86 + . . scaffold925 GLEAN promoter 388719 389718 0.982697 + . ID=CGI_10017427; scaffold925 GLEAN mRNA 389719 390190 0.982697 + . ID=CGI_10017427; scaffold925 TRF Tandem_Repeat 390888 391078 183 + . . scaffold925 TRF Tandem_Repeat 416732 416783 68 + . . scaffold925 TRF Tandem_Repeat 419164 420381 1557 + . . scaffold925 TRF Tandem_Repeat 421516 421565 100 + . . scaffold925 TRF Tandem_Repeat 422286 422318 66 + . . scaffold925 TRF Tandem_Repeat 423805 423901 117 + . . scaffold925 TRF Tandem_Repeat 428164 428254 98 + . . scaffold925 TRF Tandem_Repeat 428180 428254 100 + . . scaffold925 TRF Tandem_Repeat 428418 428491 139 + . . scaffold925 GLEAN promoter 429454 430453 0.986598 + . ID=CGI_10017428; scaffold925 TRF Tandem_Repeat 430147 430175 58 + . . scaffold925 GLEAN mRNA 430454 444048 0.986598 + . ID=CGI_10017428; scaffold925 TRF Tandem_Repeat 434866 434973 92 + . . scaffold925 TRF Tandem_Repeat 434866 434975 80 + . . scaffold925 WUBlastX LTR_DIRS 438433 438597 44 + . . scaffold925 WUBlastX LTR_DIRS 438620 438964 104 + . . scaffold925 WUBlastX LTR_DIRS 438641 438928 171 + . . scaffold925 WUBlastX LTR_DIRS 438927 439280 21 + . . scaffold925 WUBlastX LTR_DIRS 438954 439073 44 + . . scaffold925 WUBlastX LTR_DIRS 440751 441569 216 + . . scaffold925 WUBlastX LTR_DIRS 441575 441886 99 + . . scaffold925 WUBlastX LTR_DIRS 441891 442487 27 + . . scaffold925 WUBlastX LTR_DIRS 441891 442088 125 + . . scaffold925 WUBlastX LTR_DIRS 442205 442345 28 + . . scaffold925 WUBlastX LTR_DIRS 442486 442668 100 + . . scaffold925 TRF Tandem_Repeat 444079 444434 328 + . . scaffold925 TRF Tandem_Repeat 444822 445312 461 + . . scaffold925 TRF Tandem_Repeat 448786 448842 60 + . . scaffold925 TRF Tandem_Repeat 448814 448880 116 + . . scaffold925 WUBlastX DNA_TcMar-Marin 452139 452381 37 + . . scaffold925 WUBlastX DNA_TcMar-Marin 452274 452426 42 + . . scaffold925 TRF Tandem_Repeat 463665 463707 59 + . . scaffold925 TRF Tandem_Repeat 463876 463942 89 + . . scaffold925 TRF Tandem_Repeat 464358 464405 60 + . . scaffold925 TRF Tandem_Repeat 465240 465332 55 + . . scaffold925 TRF Tandem_Repeat 480899 480936 67 + . . scaffold925 WUBlastX LINE_L1-Tx1 482016 482429 38 + . . scaffold925 WUBlastX LINE_L1-Tx1 482073 482420 49 + . . scaffold925 TRF Tandem_Repeat 488323 488374 104 + . . scaffold925 WUBlastX LINE_Penelope 488389 488865 58 + . . scaffold925 WUBlastX LINE_Penelope 488485 488946 113 + . . scaffold925 GLEAN promoter 488708 489707 0.95877 + . ID=CGI_10017429; scaffold925 TRF Tandem_Repeat 489271 489315 81 + . . scaffold925 GLEAN mRNA 489708 493165 0.95877 + . ID=CGI_10017429; scaffold925 TRF Tandem_Repeat 494351 494390 80 + . . scaffold925 WUBlastX LTR_DIRS 500491 500751 69 - . . scaffold925 WUBlastX LTR_DIRS 500536 500784 112 - . . scaffold925 WUBlastX LTR_DIRS 500798 501430 185 - . . scaffold925 WUBlastX LTR_DIRS 501434 502447 178 - . . scaffold925 WUBlastX LTR_DIRS 501632 502375 379 - . . scaffold925 WUBlastX LTR_DIRS 501788 502402 429 - . . scaffold925 WUBlastX LTR_Gypsy 502708 502803 29 - . . scaffold925 WUBlastX LTR_Gypsy 503188 503310 24 - . . scaffold925 GLEAN mRNA 503910 504146 0.999372 - . ID=CGI_10017430; scaffold925 GLEAN promoter 504147 504552 0.999372 - . ID=CGI_10017430; scaffold926 GLEAN mRNA 1012 1464 0.999376 - . ID=CGI_10011361; scaffold926 GLEAN promoter 1465 2464 0.999376 - . ID=CGI_10011361; scaffold926 WUBlastX LTR_Ngaro 2102 2188 28 + . . scaffold926 WUBlastX LTR_Ngaro 2253 2477 80 + . . scaffold926 WUBlastX LTR_Ngaro 2518 2649 79 + . . scaffold926 WUBlastX LTR_Ngaro 2521 2694 61 + . . scaffold926 WUBlastX LTR_Gypsy 4258 4464 186 + . . scaffold926 WUBlastX LTR_Gypsy 4443 4985 278 + . . scaffold926 WUBlastX LTR_Gypsy 5050 5448 36 + . . scaffold926 WUBlastX LTR_Gypsy 5122 5907 532 + . . scaffold926 WUBlastX LTR_Gypsy 5254 6333 374 + . . scaffold926 WUBlastX LTR_Gypsy 6279 7583 205 + . . scaffold926 WUBlastX LTR_Gypsy 6333 7316 860 + . . scaffold926 WUBlastX LTR_Gypsy 10910 11854 391 + . . scaffold926 WUBlastX LTR_Gypsy 10916 11689 567 + . . scaffold926 WUBlastX LTR_Gypsy 11827 11901 30 + . . scaffold926 GLEAN mRNA 17754 21997 0.656307 - . ID=CGI_10011362; scaffold926 GLEAN promoter 21998 22997 0.656307 - . ID=CGI_10011362; scaffold926 WUBlastX LTR_Gypsy 23937 24020 47 - . . scaffold926 WUBlastX LTR_Gypsy 24298 24873 84 - . . scaffold926 WUBlastX LTR_Gypsy 24454 25041 119 - . . scaffold926 GLEAN mRNA 25180 25554 0.999372 - . ID=CGI_10011363; scaffold926 GLEAN promoter 25555 26554 0.999372 - . ID=CGI_10011363; scaffold926 TRF Tandem_Repeat 25646 25949 545 + . . scaffold926 WUBlastX LTR_DIRS 27680 28159 181 + . . scaffold926 WUBlastX DNA_Zator 38891 39970 352 + . . scaffold926 WUBlastX DNA_Zator 39988 40407 345 + . . scaffold926 WUBlastX DNA_Zator 40406 41041 352 + . . scaffold926 WUBlastX DNA_Zator 40418 41242 182 + . . scaffold926 WUBlastX DNA_Zator 41461 41628 57 + . . scaffold926 TRF Tandem_Repeat 41792 41839 60 + . . scaffold926 TRF Tandem_Repeat 42391 43214 1167 + . . scaffold926 WUBlastX LTR_Gypsy 48567 48764 22 - . . scaffold926 WUBlastX LTR_ERV1 48597 48839 49 - . . scaffold926 WUBlastX LTR_ERV1 48660 49058 60 - . . scaffold926 WUBlastX LTR_ERV1 48672 49151 20 - . . scaffold926 TRF Tandem_Repeat 51618 51842 301 + . . scaffold926 TRF Tandem_Repeat 69767 69879 59 + . . scaffold926 TRF Tandem_Repeat 69767 69879 66 + . . scaffold926 TRF Tandem_Repeat 114677 114725 98 + . . scaffold926 TRF Tandem_Repeat 151285 151319 54 + . . scaffold926 WUBlastX LINE_L2 152848 152901 21 + . . scaffold926 WUBlastX LINE_CR1 153602 153844 71 + . . scaffold926 WUBlastX LINE_CR1-L2 153671 153832 80 + . . scaffold926 WUBlastX LINE_CR1-L2 153704 153832 94 + . . scaffold926 WUBlastX LINE_L2 153832 155115 250 + . . scaffold926 GLEAN mRNA 156721 158900 1 - . ID=CGI_10011364; scaffold926 GLEAN promoter 158901 159900 1 - . ID=CGI_10011364; scaffold926 GLEAN promoter 172617 173616 0.593179 + . ID=CGI_10011365; scaffold926 GLEAN mRNA 173617 177936 0.593179 + . ID=CGI_10011365; scaffold926 TRF Tandem_Repeat 178984 179026 54 + . . scaffold926 WUBlastX LTR_Ngaro 190537 190716 42 + . . scaffold926 WUBlastX LTR_Ngaro 190576 190746 50 + . . scaffold926 WUBlastX LTR_Ngaro 190752 191162 76 + . . scaffold926 WUBlastX LTR_Ngaro 190890 191171 92 + . . scaffold926 TRF Tandem_Repeat 199393 199515 194 + . . scaffold926 TRF Tandem_Repeat 199403 199531 130 + . . scaffold926 WUBlastX DNA_Sola 201599 202540 412 + . . scaffold926 GLEAN promoter 202498 203497 0.999996 + . ID=CGI_10011367; scaffold926 WUBlastX DNA_Sola 202546 203175 236 + . . scaffold926 WUBlastX DNA_Sola 203177 203488 115 + . . scaffold926 GLEAN mRNA 203498 204323 0.999996 + . ID=CGI_10011367; scaffold926 WUBlastX DNA_Sola 203688 204248 164 + . . scaffold926 TRF Tandem_Repeat 210995 211039 90 + . . scaffold926 TRF Tandem_Repeat 215973 216051 98 + . . scaffold926 TRF Tandem_Repeat 215975 216058 87 + . . scaffold926 TRF Tandem_Repeat 215991 216075 80 + . . scaffold926 TRF Tandem_Repeat 215995 216077 63 + . . scaffold926 TRF Tandem_Repeat 221947 221993 94 + . . scaffold926 TRF Tandem_Repeat 229590 229634 65 + . . scaffold926 TRF Tandem_Repeat 231252 231287 72 + . . scaffold926 TRF Tandem_Repeat 231285 231326 52 + . . scaffold926 TRF Tandem_Repeat 231361 231414 108 + . . scaffold926 GLEAN promoter 238805 239804 0.997091 + . ID=CGI_10011368; scaffold926 GLEAN mRNA 239805 245778 0.997091 + . ID=CGI_10011368; scaffold926 GLEAN mRNA 249811 260840 0.999113 - . ID=CGI_10011369; scaffold926 TRF Tandem_Repeat 256107 256275 338 + . . scaffold926 GLEAN promoter 260841 261840 0.999113 - . ID=CGI_10011369; scaffold926 GLEAN promoter 261966 262965 0.628297 + . ID=CGI_10011370; scaffold926 GLEAN mRNA 262966 286413 0.628297 + . ID=CGI_10011370; scaffold926 WUBlastX LINE_L1-Tx1 287694 289037 578 - . . scaffold927 WUBlastX DNA_TcMar-Marin 7134 7553 36 + . . scaffold929 GLEAN promoter 1 483 0.995275 + . ID=CGI_10006341; scaffold929 GLEAN mRNA 484 927 0.995275 + . ID=CGI_10006341; scaffold929 TRF Tandem_Repeat 5891 5915 50 + . . scaffold929 WUBlastX LINE_RTE-X 7443 7775 21 - . . scaffold929 WUBlastX LINE_RTE-X 7488 7769 42 - . . scaffold929 WUBlastX LINE_RTE-X 7548 7697 45 - . . scaffold929 WUBlastX LINE_RTE-X 24127 24495 78 - . . scaffold929 TRF Tandem_Repeat 27605 27671 116 + . . scaffold929 TRF Tandem_Repeat 28680 28708 58 + . . scaffold929 TRF Tandem_Repeat 46122 46169 96 + . . scaffold929 TRF Tandem_Repeat 52544 53502 1325 + . . scaffold929 TRF Tandem_Repeat 53533 53572 71 + . . scaffold929 TRF Tandem_Repeat 53762 53801 71 + . . scaffold929 TRF Tandem_Repeat 67479 67506 56 + . . scaffold929 TRF Tandem_Repeat 71123 71908 1150 + . . scaffold929 GLEAN promoter 76398 77397 1 + . ID=CGI_10006343; scaffold929 GLEAN mRNA 77398 84757 1 + . ID=CGI_10006343; scaffold929 GLEAN mRNA 90596 112830 0.741655 - . ID=CGI_10006344; scaffold929 GLEAN promoter 112831 113830 0.741655 - . ID=CGI_10006344; scaffold929 TRF Tandem_Repeat 114435 114468 59 + . . scaffold929 GLEAN promoter 115400 116399 0.987262 + . ID=CGI_10006345; scaffold929 GLEAN mRNA 116400 138361 0.987262 + . ID=CGI_10006345; scaffold929 WUBlastX LINE_CR1-L2 124599 124916 43 + . . scaffold929 WUBlastX LINE_CR1-L2 124656 125306 26 + . . scaffold929 WUBlastX LINE_CR1-L2 124656 124916 69 + . . scaffold929 GLEAN mRNA 138295 144366 0.99935 - . ID=CGI_10006346; scaffold929 GLEAN promoter 144182 145181 1 + . ID=CGI_10006347; scaffold929 GLEAN promoter 144367 145366 0.99935 - . ID=CGI_10006346; scaffold929 TRF Tandem_Repeat 144507 144549 86 + . . scaffold929 TRF Tandem_Repeat 144903 144968 132 + . . scaffold929 GLEAN mRNA 145182 148134 1 + . ID=CGI_10006347; scaffold929 TRF Tandem_Repeat 147723 147778 112 + . . scaffold93 TRF Tandem_Repeat 1 111 85 + . . scaffold93 TRF Tandem_Repeat 95 262 309 + . . scaffold93 TRF Tandem_Repeat 475 676 207 + . . scaffold93 TRF Tandem_Repeat 475 676 282 + . . scaffold93 GLEAN mRNA 1549 15455 1 - . ID=CGI_10002717; scaffold93 TRF Tandem_Repeat 1754 2139 335 + . . scaffold93 TRF Tandem_Repeat 6375 6429 85 + . . scaffold93 GLEAN promoter 15355 16354 0.999695 + . ID=CGI_10002718; scaffold93 GLEAN promoter 15456 16455 1 - . ID=CGI_10002717; scaffold93 WUBlastX DNA_Kolobok 15773 16207 21 + . . scaffold93 GLEAN mRNA 16355 18715 0.999695 + . ID=CGI_10002718; scaffold93 WUBlastX DNA_Kolobok 17189 18688 547 + . . scaffold93 WUBlastX DNA_Harbinger 38550 39281 376 - . . scaffold93 GLEAN promoter 43538 44537 0.768021 + . ID=CGI_10002719; scaffold93 GLEAN mRNA 44538 46208 0.768021 + . ID=CGI_10002719; scaffold93 TRF Tandem_Repeat 51920 52830 1689 + . . scaffold93 TRF Tandem_Repeat 53003 53052 66 + . . scaffold93 TRF Tandem_Repeat 54437 54642 263 + . . scaffold93 TRF Tandem_Repeat 54437 54642 218 + . . scaffold93 TRF Tandem_Repeat 54549 54628 52 + . . scaffold930 GLEAN mRNA 1634 2497 0.99996 - . ID=CGI_10010183; scaffold930 GLEAN promoter 2498 3497 0.99996 - . ID=CGI_10010183; scaffold930 TRF Tandem_Repeat 3198 3237 80 + . . scaffold930 TRF Tandem_Repeat 3853 3895 86 + . . scaffold930 TRF Tandem_Repeat 13958 14010 106 + . . scaffold930 GLEAN promoter 14501 15500 1 + . ID=CGI_10010184; scaffold930 GLEAN mRNA 15501 19986 1 + . ID=CGI_10010184; scaffold930 GLEAN mRNA 25403 33367 1 - . ID=CGI_10010185; scaffold930 TRF Tandem_Repeat 27251 27277 54 + . . scaffold930 GLEAN promoter 32975 33974 0.999846 + . ID=CGI_10010186; scaffold930 GLEAN promoter 33368 34367 1 - . ID=CGI_10010185; scaffold930 GLEAN mRNA 33975 41412 0.999846 + . ID=CGI_10010186; scaffold930 GLEAN mRNA 45161 47458 1 - . ID=CGI_10010187; scaffold930 GLEAN promoter 47115 48114 1 + . ID=CGI_10010188; scaffold930 GLEAN promoter 47459 48458 1 - . ID=CGI_10010187; scaffold930 GLEAN mRNA 48115 51003 1 + . ID=CGI_10010188; scaffold930 GLEAN mRNA 51525 91930 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 58502 58689 135 + . . scaffold930 TRF Tandem_Repeat 58511 58692 105 + . . scaffold930 TRF Tandem_Repeat 59821 59854 68 + . . scaffold930 TRF Tandem_Repeat 63139 63182 88 + . . scaffold930 TRF Tandem_Repeat 63182 63234 106 + . . scaffold930 TRF Tandem_Repeat 68439 68479 64 + . . scaffold930 TRF Tandem_Repeat 72186 72286 177 + . . scaffold930 TRF Tandem_Repeat 72445 72472 56 + . . scaffold930 TRF Tandem_Repeat 75908 75959 68 + . . scaffold930 TRF Tandem_Repeat 75908 75972 94 + . . scaffold930 TRF Tandem_Repeat 75908 75972 85 + . . scaffold930 TRF Tandem_Repeat 75917 75972 67 + . . scaffold930 TRF Tandem_Repeat 90347 90384 76 + . . scaffold930 GLEAN promoter 91931 92930 0.901389 - . ID=CGI_10010189; scaffold930 TRF Tandem_Repeat 100182 100212 62 + . . scaffold930 GLEAN mRNA 104155 114722 0.948676 - . ID=CGI_10010190; scaffold930 GLEAN promoter 114723 115722 0.948676 - . ID=CGI_10010190; scaffold930 GLEAN mRNA 116124 137897 0.412577 - . ID=CGI_10010191; scaffold930 TRF Tandem_Repeat 124583 124649 89 + . . scaffold930 TRF Tandem_Repeat 127041 127095 110 + . . scaffold930 GLEAN promoter 137898 138897 0.412577 - . ID=CGI_10010191; scaffold930 GLEAN promoter 139229 140228 1 + . ID=CGI_10010192; scaffold930 GLEAN mRNA 140229 143850 1 + . ID=CGI_10010192; scaffold930 WUBlastX LINE_L2 145467 145619 75 + . . scaffold930 WUBlastX LINE_CR1-L2 145473 145694 62 + . . scaffold930 WUBlastX LINE_L2 146080 146187 63 + . . scaffold930 GLEAN promoter 147073 148072 0.999676 + . ID=CGI_10010193; scaffold930 GLEAN mRNA 148073 162767 0.999676 + . ID=CGI_10010193; scaffold930 TRF Tandem_Repeat 156666 156728 126 + . . scaffold930 TRF Tandem_Repeat 157058 157117 111 + . . scaffold930 TRF Tandem_Repeat 161659 161686 56 + . . scaffold930 GLEAN mRNA 166728 188807 0.982321 - . ID=CGI_10010194; scaffold930 GLEAN promoter 168204 169203 1 + . ID=CGI_10010195; scaffold930 GLEAN mRNA 169204 172724 1 + . ID=CGI_10010195; scaffold930 TRF Tandem_Repeat 169578 169609 64 + . . scaffold930 TRF Tandem_Repeat 173292 173341 100 + . . scaffold930 GLEAN promoter 188808 189807 0.982321 - . ID=CGI_10010194; scaffold930 GLEAN mRNA 189522 194807 0.999843 - . ID=CGI_10010196; scaffold930 TRF Tandem_Repeat 192930 192979 100 + . . scaffold930 GLEAN promoter 194808 195807 0.999843 - . ID=CGI_10010196; scaffold930 WUBlastX DNA_hAT-hATw 202521 202706 39 + . . scaffold930 WUBlastX DNA_hAT-hATw 202726 203166 22 + . . scaffold930 GLEAN mRNA 206005 207774 0.598607 - . ID=CGI_10010197; scaffold930 GLEAN promoter 207775 208774 0.598607 - . ID=CGI_10010197; scaffold930 GLEAN promoter 209299 210298 0.560178 + . ID=CGI_10010198; scaffold930 GLEAN mRNA 210299 210529 0.560178 + . ID=CGI_10010198; scaffold930 TRF Tandem_Repeat 211260 211311 104 + . . scaffold930 TRF Tandem_Repeat 211694 211743 100 + . . scaffold930 TRF Tandem_Repeat 212924 212972 98 + . . scaffold930 GLEAN mRNA 216915 218681 1 - . ID=CGI_10010199; scaffold930 GLEAN promoter 218682 219681 1 - . ID=CGI_10010199; scaffold930 TRF Tandem_Repeat 221282 221455 151 + . . scaffold930 TRF Tandem_Repeat 221493 221636 128 + . . scaffold930 GLEAN mRNA 225056 226363 0.593389 - . ID=CGI_10010200; scaffold930 GLEAN promoter 226364 227363 0.593389 - . ID=CGI_10010200; scaffold930 GLEAN mRNA 226432 226842 0.776794 - . ID=CGI_10010201; scaffold930 GLEAN promoter 226843 227842 0.776794 - . ID=CGI_10010201; scaffold930 TRF Tandem_Repeat 226994 227087 89 + . . scaffold930 TRF Tandem_Repeat 227317 227476 160 + . . scaffold930 TRF Tandem_Repeat 227553 227644 96 + . . scaffold930 GLEAN promoter 229056 230055 1 + . ID=CGI_10010202; scaffold930 TRF Tandem_Repeat 229319 229343 50 + . . scaffold930 GLEAN mRNA 230056 231249 1 + . ID=CGI_10010202; scaffold930 GLEAN mRNA 232511 243304 0.84036 - . ID=CGI_10010203; scaffold930 TRF Tandem_Repeat 237634 237736 118 + . . scaffold930 TRF Tandem_Repeat 237645 237804 158 + . . scaffold930 TRF Tandem_Repeat 237803 237927 106 + . . scaffold930 WUBlastX DNA_Merlin 239848 240240 26 + . . scaffold930 WUBlastX DNA_Merlin 240001 240234 40 + . . scaffold930 WUBlastX DNA_Merlin 241083 241574 292 + . . scaffold930 GLEAN promoter 243305 244304 0.84036 - . ID=CGI_10010203; scaffold930 WUBlastX DNA_TcMar-Fot1 244170 244598 101 - . . scaffold930 WUBlastX DNA_Harbinger 251716 251895 22 + . . scaffold930 WUBlastX LINE_CR1-L2 252174 252434 67 + . . scaffold930 WUBlastX LINE_CR1-L2 252207 252491 60 + . . scaffold930 WUBlastX LINE_CR1-L2 252556 252633 20 + . . scaffold932 TRF Tandem_Repeat 14810 14837 56 + . . scaffold932 TRF Tandem_Repeat 26769 26842 103 + . . scaffold932 WUBlastX LTR_DIRS 37685 38218 288 - . . scaffold932 WUBlastX LTR_DIRS? 38214 38513 70 - . . scaffold932 WUBlastX LTR_DIRS 38277 38654 129 - . . scaffold932 TRF Tandem_Repeat 40003 40056 74 + . . scaffold932 TRF Tandem_Repeat 40255 41571 1982 + . . scaffold932 WUBlastX LTR_DIRS 41943 43706 596 - . . scaffold932 WUBlastX LTR_Gypsy 43209 43928 27 - . . scaffold932 GLEAN promoter 47215 48214 0.997897 + . ID=CGI_10006169; scaffold932 GLEAN mRNA 48215 49943 0.997897 + . ID=CGI_10006169; scaffold932 TRF Tandem_Repeat 50641 50754 117 + . . scaffold932 GLEAN promoter 52761 53760 0.99937 + . ID=CGI_10006170; scaffold932 GLEAN promoter 53128 54127 0.999998 + . ID=CGI_10006171; scaffold932 GLEAN mRNA 53761 54039 0.99937 + . ID=CGI_10006170; scaffold932 GLEAN mRNA 54128 54307 0.999998 + . ID=CGI_10006171; scaffold932 GLEAN promoter 57905 58904 0.550492 + . ID=CGI_10006172; scaffold932 GLEAN mRNA 58905 65643 0.550492 + . ID=CGI_10006172; scaffold932 TRF Tandem_Repeat 67750 67853 154 + . . scaffold932 GLEAN mRNA 73888 90723 0.972553 - . ID=CGI_10006173; scaffold932 TRF Tandem_Repeat 82050 82798 526 + . . scaffold932 TRF Tandem_Repeat 82097 82798 644 + . . scaffold932 TRF Tandem_Repeat 82144 82798 576 + . . scaffold932 TRF Tandem_Repeat 84270 84446 300 + . . scaffold932 GLEAN promoter 90724 91723 0.972553 - . ID=CGI_10006173; scaffold932 GLEAN promoter 91870 92869 0.394107 + . ID=CGI_10006174; scaffold932 GLEAN mRNA 92870 122772 0.394107 + . ID=CGI_10006174; scaffold932 TRF Tandem_Repeat 97995 98815 1115 + . . scaffold932 TRF Tandem_Repeat 100070 100325 485 + . . scaffold932 TRF Tandem_Repeat 100456 100666 323 + . . scaffold932 TRF Tandem_Repeat 109318 109693 468 + . . scaffold932 TRF Tandem_Repeat 109732 109863 194 + . . scaffold932 TRF Tandem_Repeat 111959 112676 1116 + . . scaffold932 TRF Tandem_Repeat 118130 118519 619 + . . scaffold932 TRF Tandem_Repeat 120040 121557 1339 + . . scaffold932 TRF Tandem_Repeat 120875 121099 59 + . . scaffold932 TRF Tandem_Repeat 121035 121459 71 + . . scaffold932 GLEAN mRNA 125354 128028 0.999998 - . ID=CGI_10006175; scaffold932 GLEAN promoter 128029 129028 0.999998 - . ID=CGI_10006175; scaffold932 GLEAN promoter 130662 131661 1 + . ID=CGI_10006177; scaffold932 GLEAN mRNA 131652 131861 0.776639 - . ID=CGI_10006176; scaffold932 GLEAN mRNA 131662 133977 1 + . ID=CGI_10006177; scaffold932 GLEAN promoter 131862 132861 0.776639 - . ID=CGI_10006176; scaffold932 GLEAN mRNA 135366 138652 0.99996 - . ID=CGI_10006178; scaffold932 GLEAN promoter 138583 139582 1 + . ID=CGI_10006179; scaffold932 GLEAN promoter 138653 139652 0.99996 - . ID=CGI_10006178; scaffold932 GLEAN mRNA 139583 142713 1 + . ID=CGI_10006179; scaffold932 WUBlastX DNA_hAT 145632 146306 168 + . . scaffold933 TRF Tandem_Repeat 4652 4788 126 + . . scaffold933 TRF Tandem_Repeat 5266 5291 52 + . . scaffold933 GLEAN mRNA 12265 16055 0.84036 - . ID=CGI_10016704; scaffold933 GLEAN promoter 15730 16729 0.999993 + . ID=CGI_10016705; scaffold933 GLEAN promoter 16056 17055 0.84036 - . ID=CGI_10016704; scaffold933 GLEAN mRNA 16730 20213 0.999993 + . ID=CGI_10016705; scaffold933 TRF Tandem_Repeat 23883 23939 51 + . . scaffold933 TRF Tandem_Repeat 27567 27611 90 + . . scaffold933 GLEAN mRNA 31407 64205 0.744668 - . ID=CGI_10016706; scaffold933 TRF Tandem_Repeat 43018 43074 114 + . . scaffold933 TRF Tandem_Repeat 49002 49236 337 + . . scaffold933 TRF Tandem_Repeat 50602 50996 634 + . . scaffold933 TRF Tandem_Repeat 51962 52093 215 + . . scaffold933 TRF Tandem_Repeat 58238 58584 342 + . . scaffold933 GLEAN promoter 64206 65205 0.744668 - . ID=CGI_10016706; scaffold933 GLEAN promoter 65553 66552 0.999676 + . ID=CGI_10016707; scaffold933 GLEAN mRNA 66553 77276 0.999676 + . ID=CGI_10016707; scaffold933 TRF Tandem_Repeat 69134 69164 62 + . . scaffold933 TRF Tandem_Repeat 70764 70936 127 + . . scaffold933 TRF Tandem_Repeat 80976 81184 303 + . . scaffold933 TRF Tandem_Repeat 87026 87069 88 + . . scaffold933 GLEAN promoter 87598 88597 0.910576 + . ID=CGI_10016708; scaffold933 GLEAN mRNA 88598 95540 0.910576 + . ID=CGI_10016708; scaffold933 TRF Tandem_Repeat 97765 97803 78 + . . scaffold933 GLEAN mRNA 99181 103630 0.999993 - . ID=CGI_10016709; scaffold933 TRF Tandem_Repeat 101922 102251 464 + . . scaffold933 GLEAN promoter 103250 104249 0.781334 + . ID=CGI_10016710; scaffold933 GLEAN promoter 103631 104630 0.999993 - . ID=CGI_10016709; scaffold933 GLEAN mRNA 104250 108815 0.781334 + . ID=CGI_10016710; scaffold933 GLEAN mRNA 108591 119850 0.758882 - . ID=CGI_10016711; scaffold933 TRF Tandem_Repeat 112465 113401 1349 + . . scaffold933 TRF Tandem_Repeat 113595 113710 216 + . . scaffold933 TRF Tandem_Repeat 117272 117478 231 + . . scaffold933 GLEAN promoter 119851 120850 0.758882 - . ID=CGI_10016711; scaffold933 TRF Tandem_Repeat 123416 123473 116 + . . scaffold933 TRF Tandem_Repeat 124420 126033 1816 + . . scaffold933 WUBlastX LTR_Gypsy 133960 134310 55 - . . scaffold933 WUBlastX LTR_Gypsy 134158 134340 43 - . . scaffold933 TRF Tandem_Repeat 140802 140848 85 + . . scaffold933 WUBlastX DNA_TcMar-Marin 141940 142191 45 + . . scaffold933 TRF Tandem_Repeat 142225 142291 134 + . . scaffold933 TRF Tandem_Repeat 143778 143818 82 + . . scaffold933 GLEAN mRNA 146973 148613 0.999675 - . ID=CGI_10016712; scaffold933 GLEAN promoter 148614 149613 0.999675 - . ID=CGI_10016712; scaffold933 TRF Tandem_Repeat 151336 151388 106 + . . scaffold933 TRF Tandem_Repeat 151420 151469 75 + . . scaffold933 GLEAN mRNA 165163 174206 0.805967 - . ID=CGI_10016713; scaffold933 TRF Tandem_Repeat 173228 173259 64 + . . scaffold933 GLEAN promoter 174207 175206 0.805967 - . ID=CGI_10016713; scaffold933 TRF Tandem_Repeat 175405 175754 568 + . . scaffold933 TRF Tandem_Repeat 175959 175994 72 + . . scaffold933 GLEAN promoter 176021 177020 0.999984 + . ID=CGI_10016714; scaffold933 GLEAN promoter 176682 177681 0.618241 + . ID=CGI_10016715; scaffold933 GLEAN mRNA 177021 177467 0.999984 + . ID=CGI_10016714; scaffold933 GLEAN mRNA 177682 178209 0.618241 + . ID=CGI_10016715; scaffold933 GLEAN promoter 180725 181724 1 + . ID=CGI_10016716; scaffold933 GLEAN mRNA 181725 192041 1 + . ID=CGI_10016716; scaffold933 TRF Tandem_Repeat 196602 196665 128 + . . scaffold933 WUBlastX LTR_Gypsy 209060 209293 44 - . . scaffold933 WUBlastX LTR_Gypsy 209126 209305 64 - . . scaffold933 WUBlastX LTR_Gypsy 209161 209655 97 - . . scaffold933 WUBlastX LTR_Gypsy 209296 209847 124 - . . scaffold933 WUBlastX LTR_Gypsy-Cigr 209296 209757 265 - . . scaffold933 WUBlastX DNA_TcMar-Tc1 216845 217201 170 - . . scaffold933 WUBlastX DNA_TcMar-Tc1 217213 217275 30 - . . scaffold933 WUBlastX DNA_TcMar-Tc1 217231 217617 168 - . . scaffold933 WUBlastX LINE_Penelope 220593 220781 67 + . . scaffold933 GLEAN mRNA 225290 229139 0.992253 - . ID=CGI_10016717; scaffold933 GLEAN promoter 229140 230139 0.992253 - . ID=CGI_10016717; scaffold933 TRF Tandem_Repeat 242202 242268 80 + . . scaffold933 TRF Tandem_Repeat 242203 242264 54 + . . scaffold933 TRF Tandem_Repeat 261077 261127 66 + . . scaffold933 TRF Tandem_Repeat 261081 261128 51 + . . scaffold933 TRF Tandem_Repeat 263038 263067 51 + . . scaffold933 TRF Tandem_Repeat 275489 275528 80 + . . scaffold933 TRF Tandem_Repeat 277423 277473 57 + . . scaffold933 TRF Tandem_Repeat 277998 278046 80 + . . scaffold933 GLEAN mRNA 280730 289414 0.83675 - . ID=CGI_10016718; scaffold933 TRF Tandem_Repeat 282141 282442 278 + . . scaffold933 TRF Tandem_Repeat 282568 282600 57 + . . scaffold933 GLEAN promoter 284637 285636 1 + . ID=CGI_10016719; scaffold933 TRF Tandem_Repeat 284687 284730 70 + . . scaffold933 GLEAN mRNA 285637 289495 1 + . ID=CGI_10016719; scaffold933 TRF Tandem_Repeat 285812 286126 444 + . . scaffold933 TRF Tandem_Repeat 285812 286126 448 + . . scaffold933 TRF Tandem_Repeat 285847 285982 60 + . . scaffold933 TRF Tandem_Repeat 287166 287286 149 + . . scaffold933 GLEAN promoter 289415 290414 0.83675 - . ID=CGI_10016718; scaffold933 GLEAN mRNA 293217 296823 1 - . ID=CGI_10016720; scaffold933 GLEAN promoter 296824 297823 1 - . ID=CGI_10016720; scaffold933 TRF Tandem_Repeat 299574 299615 84 + . . scaffold933 WUBlastX DNA_TcMar-ISRm1 308720 309385 112 - . . scaffold933 WUBlastX DNA_TcMar-Ant1 308831 309397 134 - . . scaffold933 TRF Tandem_Repeat 315507 315581 114 + . . scaffold933 GLEAN promoter 315975 316974 1 + . ID=CGI_10016721; scaffold933 GLEAN mRNA 316975 320061 1 + . ID=CGI_10016721; scaffold933 TRF Tandem_Repeat 317542 317613 99 + . . scaffold933 TRF Tandem_Repeat 318784 319017 152 + . . scaffold933 GLEAN promoter 319919 320918 0.990126 + . ID=CGI_10016722; scaffold933 TRF Tandem_Repeat 320705 320799 145 + . . scaffold933 TRF Tandem_Repeat 320706 320798 109 + . . scaffold933 WUBlastX LINE_L2 320907 321002 24 + . . scaffold933 GLEAN mRNA 320919 329030 0.990126 + . ID=CGI_10016722; scaffold933 WUBlastX LINE_RTE-X 321382 321417 23 + . . scaffold933 WUBlastX LINE_L1 321608 322141 78 + . . scaffold933 WUBlastX LINE_RTE-X 321701 322237 111 + . . scaffold933 WUBlastX LINE_L1 321833 322237 117 + . . scaffold933 WUBlastX LINE_RTE-X 322242 323891 210 + . . scaffold933 WUBlastX LINE_RTE-X 322257 323393 239 + . . scaffold933 TRF Tandem_Repeat 324128 324168 73 + . . scaffold933 TRF Tandem_Repeat 324988 325016 58 + . . scaffold933 TRF Tandem_Repeat 328005 328124 82 + . . scaffold933 TRF Tandem_Repeat 333755 333819 100 + . . scaffold933 TRF Tandem_Repeat 334969 335000 64 + . . scaffold933 GLEAN promoter 337863 338862 0.99375 + . ID=CGI_10016723; scaffold933 TRF Tandem_Repeat 338503 338542 80 + . . scaffold933 GLEAN mRNA 338863 344590 0.99375 + . ID=CGI_10016723; scaffold933 TRF Tandem_Repeat 342062 342268 166 + . . scaffold933 TRF Tandem_Repeat 343207 343244 76 + . . scaffold933 GLEAN promoter 349840 350839 0.998821 + . ID=CGI_10016724; scaffold933 TRF Tandem_Repeat 350572 350613 84 + . . scaffold933 GLEAN mRNA 350840 363185 0.998821 + . ID=CGI_10016724; scaffold933 TRF Tandem_Repeat 360659 360905 190 + . . scaffold933 TRF Tandem_Repeat 360659 360905 221 + . . scaffold933 GLEAN promoter 367102 368101 1 + . ID=CGI_10016725; scaffold933 GLEAN mRNA 368102 371480 1 + . ID=CGI_10016725; scaffold933 TRF Tandem_Repeat 369870 369949 160 + . . scaffold933 TRF Tandem_Repeat 405935 405974 64 + . . scaffold933 WUBlastX DNA_Maverick 406970 407725 262 - . . scaffold933 WUBlastX DNA_Maverick 406988 407563 276 - . . scaffold933 WUBlastX DNA_Maverick 407530 408051 230 - . . scaffold933 WUBlastX DNA_Maverick 408132 408458 74 - . . scaffold933 WUBlastX DNA_Maverick 408192 408458 126 - . . scaffold933 WUBlastX DNA_Maverick 408449 408934 240 - . . scaffold933 WUBlastX DNA_Maverick 408449 409075 105 - . . scaffold933 WUBlastX DNA_Maverick 409261 410283 410 + . . scaffold933 WUBlastX LTR_Gypsy 410920 411633 259 + . . scaffold933 WUBlastX LTR_Gypsy 411031 411918 395 + . . scaffold933 WUBlastX LTR_Gypsy 411031 411774 488 + . . scaffold933 WUBlastX LTR_Gypsy 411100 412068 55 + . . scaffold933 WUBlastX DNA_Zator 431153 431449 193 + . . scaffold933 GLEAN promoter 431407 432406 1 + . ID=CGI_10016726; scaffold933 WUBlastX DNA_Zator 432344 432502 101 + . . scaffold933 GLEAN mRNA 432407 433172 1 + . ID=CGI_10016726; scaffold933 WUBlastX DNA_Zator 432603 433148 145 + . . scaffold933 WUBlastX DNA_Kolobok 436728 437252 22 - . . scaffold933 GLEAN promoter 437762 438761 0.391135 + . ID=CGI_10016727; scaffold933 GLEAN mRNA 438762 447503 0.391135 + . ID=CGI_10016727; scaffold933 WUBlastX DNA_En-Spm 442066 442785 122 - . . scaffold933 WUBlastX DNA_En-Spm 442785 442904 119 - . . scaffold933 WUBlastX DNA_En-Spm 442961 443089 45 - . . scaffold933 WUBlastX DNA_Harbinger 445226 445285 38 - . . scaffold933 WUBlastX DNA_Harbinger 445285 445491 97 - . . scaffold933 TRF Tandem_Repeat 446933 447095 91 + . . scaffold933 TRF Tandem_Repeat 446954 447075 105 + . . scaffold933 WUBlastX DNA_Harbinger 454714 454938 40 - . . scaffold933 WUBlastX DNA_Harbinger 455748 455909 45 - . . scaffold933 WUBlastX LTR_Ngaro 469435 469614 75 + . . scaffold933 WUBlastX LTR_Ngaro 472233 472652 24 + . . scaffold933 WUBlastX LTR_Ngaro 472260 472505 53 + . . scaffold934 TRF Tandem_Repeat 1236 1305 113 + . . scaffold934 TRF Tandem_Repeat 1371 1426 51 + . . scaffold934 WUBlastX LTR_Gypsy 18754 19437 422 - . . scaffold934 WUBlastX LTR_Gypsy 20235 20345 20 - . . scaffold934 GLEAN mRNA 24296 43923 0.999341 - . ID=CGI_10015429; scaffold934 GLEAN promoter 28352 29351 0.992208 + . ID=CGI_10015430; scaffold934 TRF Tandem_Repeat 29099 29151 61 + . . scaffold934 GLEAN mRNA 29352 36430 0.992208 + . ID=CGI_10015430; scaffold934 TRF Tandem_Repeat 32890 33627 931 + . . scaffold934 GLEAN promoter 43924 44923 0.999341 - . ID=CGI_10015429; scaffold934 GLEAN mRNA 46060 46272 0.999068 - . ID=CGI_10015431; scaffold934 GLEAN promoter 46273 47272 0.999068 - . ID=CGI_10015431; scaffold934 TRF Tandem_Repeat 46861 46896 72 + . . scaffold934 GLEAN mRNA 53261 64974 0.999676 - . ID=CGI_10015432; scaffold934 GLEAN promoter 58575 59574 1 + . ID=CGI_10015433; scaffold934 GLEAN mRNA 59575 66968 1 + . ID=CGI_10015433; scaffold934 GLEAN promoter 64975 65974 0.999676 - . ID=CGI_10015432; scaffold934 GLEAN mRNA 73737 78113 1 - . ID=CGI_10015434; scaffold934 GLEAN promoter 78114 79113 1 - . ID=CGI_10015434; scaffold934 GLEAN mRNA 81253 84652 1 - . ID=CGI_10015435; scaffold934 GLEAN promoter 84653 85652 1 - . ID=CGI_10015435; scaffold934 TRF Tandem_Repeat 85898 85930 66 + . . scaffold934 GLEAN mRNA 86451 90379 1 - . ID=CGI_10015436; scaffold934 TRF Tandem_Repeat 87234 87259 52 + . . scaffold934 GLEAN promoter 90380 91379 1 - . ID=CGI_10015436; scaffold934 TRF Tandem_Repeat 91263 91290 56 + . . scaffold934 GLEAN mRNA 109242 112199 1 - . ID=CGI_10015437; scaffold934 TRF Tandem_Repeat 110356 110536 182 + . . scaffold934 TRF Tandem_Repeat 110535 110713 198 + . . scaffold934 TRF Tandem_Repeat 110535 110713 119 + . . scaffold934 GLEAN promoter 112200 113199 1 - . ID=CGI_10015437; scaffold934 GLEAN promoter 113025 114024 1 + . ID=CGI_10015438; scaffold934 GLEAN mRNA 114025 117130 1 + . ID=CGI_10015438; scaffold934 WUBlastX LINE_CR1-L2 120043 120189 21 - . . scaffold934 WUBlastX LINE_CR1-L2 120043 120132 28 - . . scaffold934 WUBlastX LINE_L2 120327 120371 37 - . . scaffold934 WUBlastX LINE_L2 120349 120597 52 - . . scaffold934 WUBlastX LINE_CR1-L2 120400 120660 46 - . . scaffold934 WUBlastX LINE_CR1-L2 120400 120582 62 - . . scaffold934 GLEAN mRNA 121440 122922 0.999927 - . ID=CGI_10015439; scaffold934 GLEAN promoter 122923 123922 0.999927 - . ID=CGI_10015439; scaffold934 WUBlastX LINE_CR1-L2 125087 125389 39 - . . scaffold934 GLEAN promoter 138003 139002 0.842937 + . ID=CGI_10015440; scaffold934 GLEAN mRNA 139003 151460 0.842937 + . ID=CGI_10015440; scaffold934 TRF Tandem_Repeat 142608 143804 1692 + . . scaffold934 TRF Tandem_Repeat 152847 152871 50 + . . scaffold934 TRF Tandem_Repeat 152907 152931 50 + . . scaffold934 WUBlastX LTR_Gypsy 156908 157576 23 + . . scaffold934 WUBlastX LTR_Gypsy 157013 157636 61 + . . scaffold934 WUBlastX LTR_Gypsy 157148 157597 72 + . . scaffold934 WUBlastX LTR_Gypsy 157424 160504 580 + . . scaffold934 WUBlastX LTR_Gypsy 158219 160489 1155 + . . scaffold934 WUBlastX LTR_Gypsy 158999 162100 775 + . . scaffold934 WUBlastX LTR_Gypsy 160889 162643 405 + . . scaffold934 TRF Tandem_Repeat 162252 162321 79 + . . scaffold934 GLEAN promoter 164437 165436 0.617965 + . ID=CGI_10015443; scaffold934 GLEAN mRNA 165343 180124 0.544584 - . ID=CGI_10015442; scaffold934 GLEAN mRNA 165437 166621 0.617965 + . ID=CGI_10015443; scaffold934 TRF Tandem_Repeat 167345 167388 72 + . . scaffold934 TRF Tandem_Repeat 170007 170135 59 + . . scaffold934 TRF Tandem_Repeat 178688 178731 61 + . . scaffold934 GLEAN promoter 180125 181124 0.544584 - . ID=CGI_10015442; scaffold934 TRF Tandem_Repeat 184221 184253 66 + . . scaffold934 TRF Tandem_Repeat 196257 196289 57 + . . scaffold934 TRF Tandem_Repeat 196289 196357 138 + . . scaffold934 TRF Tandem_Repeat 208094 208142 89 + . . scaffold934 TRF Tandem_Repeat 212709 212762 58 + . . scaffold934 GLEAN promoter 239882 240881 0.992342 + . ID=CGI_10015444; scaffold934 GLEAN mRNA 240882 243517 0.992342 + . ID=CGI_10015444; scaffold934 GLEAN promoter 243426 244425 0.975523 + . ID=CGI_10015445; scaffold934 GLEAN mRNA 244426 254135 0.975523 + . ID=CGI_10015445; scaffold934 WUBlastX LINE_L1-Tx1 245509 245913 33 + . . scaffold934 WUBlastX LINE_L1 245605 245904 37 + . . scaffold934 WUBlastX DNA_Harbinger 254887 255024 67 + . . scaffold934 TRF Tandem_Repeat 255510 255551 84 + . . scaffold934 WUBlastX DNA_Harbinger 256951 257022 22 - . . scaffold934 WUBlastX DNA_Harbinger 257205 257333 69 - . . scaffold934 WUBlastX DNA_Harbinger 257332 257448 59 - . . scaffold934 WUBlastX DNA_Harbinger 257559 257900 174 - . . scaffold934 WUBlastX DNA_Harbinger 257571 257996 115 - . . scaffold934 TRF Tandem_Repeat 260696 260734 78 + . . scaffold934 WUBlastX DNA_Harbinger 261865 262089 54 - . . scaffold934 GLEAN mRNA 262254 282098 1 - . ID=CGI_10015446; scaffold934 WUBlastX LTR_DIRS 264057 264536 60 + . . scaffold934 WUBlastX LTR_DIRS 264246 264545 84 + . . scaffold934 WUBlastX LINE_L1-Tx1 265466 265963 54 - . . scaffold934 WUBlastX LINE_L1-Tx1 266073 266222 44 - . . scaffold934 WUBlastX LINE_L1-Tx1 266708 268096 232 - . . scaffold934 WUBlastX LINE_L1-Tx1 267071 268096 374 - . . scaffold934 WUBlastX LINE_L1 267995 268120 64 - . . scaffold934 WUBlastX LINE_RTE-BovB 267998 268144 54 - . . scaffold934 WUBlastX LINE_RTE-BovB 268913 269038 23 - . . scaffold934 TRF Tandem_Repeat 269313 269339 54 + . . scaffold934 WUBlastX RC_Helitron 271455 271595 36 + . . scaffold934 WUBlastX RC_Helitron 271497 271604 45 + . . scaffold934 WUBlastX RC_Helitron 271640 271801 71 + . . scaffold934 GLEAN promoter 281815 282814 0.901828 + . ID=CGI_10015447; scaffold934 GLEAN promoter 282099 283098 1 - . ID=CGI_10015446; scaffold934 GLEAN mRNA 282815 291724 0.901828 + . ID=CGI_10015447; scaffold934 TRF Tandem_Repeat 283590 283614 50 + . . scaffold934 WUBlastX DNA_En-Spm 283726 285102 122 + . . scaffold934 WUBlastX DNA_En-Spm 284149 286428 1415 + . . scaffold934 TRF Tandem_Repeat 286981 287010 60 + . . scaffold934 TRF Tandem_Repeat 288770 288818 98 + . . scaffold934 WUBlastX DNA_Harbinger 291153 291353 76 - . . scaffold934 WUBlastX LTR_Gypsy 293567 293653 23 + . . scaffold934 WUBlastX LTR_DIRS 293647 293784 67 + . . scaffold934 WUBlastX LTR_DIRS 293781 294041 154 + . . scaffold934 WUBlastX LTR_Gypsy 293793 294140 47 + . . scaffold934 WUBlastX LTR_DIRS 295540 295917 136 + . . scaffold934 WUBlastX LTR_DIRS 295923 296051 56 + . . scaffold934 WUBlastX LTR_DIRS 295944 296051 60 + . . scaffold934 WUBlastX DNA_TcMar-Tc1 306756 306863 20 + . . scaffold934 WUBlastX DNA_TcMar-Tc1 306986 307633 172 + . . scaffold934 WUBlastX DNA_TcMar-Tc1 307178 307633 184 + . . scaffold934 TRF Tandem_Repeat 315523 315577 110 + . . scaffold934 TRF Tandem_Repeat 317245 317278 68 + . . scaffold934 TRF Tandem_Repeat 317905 317994 128 + . . scaffold934 GLEAN promoter 318784 319783 0.448015 + . ID=CGI_10015448; scaffold934 GLEAN mRNA 319784 320359 0.448015 + . ID=CGI_10015448; scaffold934 GLEAN promoter 338259 339258 0.74773 + . ID=CGI_10015449; scaffold934 TRF Tandem_Repeat 338535 338581 94 + . . scaffold934 GLEAN mRNA 339259 349286 0.74773 + . ID=CGI_10015449; scaffold934 TRF Tandem_Repeat 344276 344330 110 + . . scaffold934 GLEAN mRNA 368870 377644 0.9978 - . ID=CGI_10015450; scaffold934 TRF Tandem_Repeat 372284 372312 58 + . . scaffold934 GLEAN promoter 377645 378644 0.9978 - . ID=CGI_10015450; scaffold934 TRF Tandem_Repeat 381225 381299 69 + . . scaffold934 TRF Tandem_Repeat 383561 383595 70 + . . scaffold934 GLEAN promoter 384356 385355 0.99982 + . ID=CGI_10015451; scaffold934 GLEAN mRNA 385356 409492 0.99982 + . ID=CGI_10015451; scaffold934 TRF Tandem_Repeat 391436 391482 57 + . . scaffold934 TRF Tandem_Repeat 404320 404427 69 + . . scaffold934 WUBlastX LTR_Ngaro 407005 407682 182 + . . scaffold934 WUBlastX LTR_Ngaro 407125 407646 232 + . . scaffold934 WUBlastX LTR_Ngaro 407221 407817 118 + . . scaffold934 WUBlastX LTR_Ngaro 407857 408132 22 + . . scaffold934 WUBlastX LTR_Ngaro 407907 408797 406 + . . scaffold934 WUBlastX LTR_Ngaro 408108 408797 415 + . . scaffold934 WUBlastX LTR_Ngaro 408776 408925 119 + . . scaffold934 WUBlastX LTR_Ngaro 408782 408958 88 + . . scaffold934 WUBlastX LTR_Ngaro 410478 410873 117 + . . scaffold934 WUBlastX LTR_Ngaro 410478 410786 178 + . . scaffold934 WUBlastX LTR_Ngaro 410876 411022 81 + . . scaffold934 WUBlastX LTR_Ngaro 410947 411510 148 + . . scaffold934 WUBlastX LTR_Ngaro 411052 411507 169 + . . scaffold934 WUBlastX LTR_Ngaro 411519 411944 140 + . . scaffold934 WUBlastX LTR_Ngaro 411567 411923 208 + . . scaffold934 WUBlastX LTR_Gypsy 417703 417864 30 - . . scaffold934 GLEAN mRNA 418014 418440 0.701167 - . ID=CGI_10015452; scaffold934 GLEAN promoter 418441 419440 0.701167 - . ID=CGI_10015452; scaffold935 GLEAN promoter 3754 4753 0.777732 + . ID=CGI_10005287; scaffold935 GLEAN mRNA 4754 5293 0.777732 + . ID=CGI_10005287; scaffold935 GLEAN promoter 7095 8094 0.998439 + . ID=CGI_10005288; scaffold935 WUBlastX DNA_TcMar-Tc2 7750 8298 94 + . . scaffold935 WUBlastX DNA_TcMar-Tc2 7939 8298 100 + . . scaffold935 GLEAN mRNA 8095 8319 0.998439 + . ID=CGI_10005288; scaffold935 TRF Tandem_Repeat 15472 15545 67 + . . scaffold935 TRF Tandem_Repeat 18336 18431 95 + . . scaffold935 TRF Tandem_Repeat 22643 22899 162 + . . scaffold935 TRF Tandem_Repeat 37548 37603 57 + . . scaffold935 WUBlastX LINE_L2 40781 41155 92 + . . scaffold935 TRF Tandem_Repeat 43595 43664 131 + . . scaffold935 WUBlastX LINE_L1 44853 45539 34 + . . scaffold935 WUBlastX LINE_RTE-X 44976 46376 498 + . . scaffold935 TRF Tandem_Repeat 48461 48502 84 + . . scaffold935 WUBlastX DNA_Sola 52356 53135 94 - . . scaffold935 WUBlastX DNA_Sola 52356 53351 67 - . . scaffold935 WUBlastX DNA_Sola 52974 53423 33 - . . scaffold935 GLEAN promoter 58855 59854 0.93759 + . ID=CGI_10005289; scaffold935 GLEAN mRNA 59855 66358 0.93759 + . ID=CGI_10005289; scaffold935 WUBlastX LINE_RTE-BovB 77210 77644 190 + . . scaffold935 WUBlastX LINE_RTE-BovB 77216 77908 120 + . . scaffold935 WUBlastX LINE_RTE-BovB 78189 78419 55 + . . scaffold935 WUBlastX LINE_RTE-BovB 78430 78471 22 + . . scaffold935 TRF Tandem_Repeat 79861 79915 65 + . . scaffold935 TRF Tandem_Repeat 79864 79919 71 + . . scaffold935 WUBlastX LINE_RTE-BovB 79988 80374 138 + . . scaffold935 WUBlastX LINE_RTE-BovB 80024 80485 44 + . . scaffold935 TRF Tandem_Repeat 100373 100418 92 + . . scaffold935 WUBlastX LINE_L1-Tx1 111934 113427 128 - . . scaffold935 WUBlastX LINE_L1-Tx1 112954 113436 131 - . . scaffold935 WUBlastX LINE_L1-Tx1 113459 113710 74 - . . scaffold935 WUBlastX LINE_L1-Tx1 113649 114212 84 - . . scaffold935 WUBlastX LINE_L1-Tx1 113661 114056 257 - . . scaffold935 WUBlastX LINE_RTE-BovB 120020 120463 153 + . . scaffold935 TRF Tandem_Repeat 120792 121604 725 + . . scaffold937 WUBlastX LINE_Penelope 186 440 39 - . . scaffold937 WUBlastX LINE_Penelope 246 443 54 - . . scaffold937 WUBlastX LINE_Penelope 279 443 64 - . . scaffold937 WUBlastX LINE_Penelope 984 1826 193 - . . scaffold937 WUBlastX LINE_Penelope 1822 2220 134 - . . scaffold937 WUBlastX LINE_Penelope 2258 2515 160 - . . scaffold938 WUBlastX LINE_RTE-X 114 248 23 + . . scaffold938 WUBlastX LINE_RTE-X 293 439 34 + . . scaffold938 WUBlastX LINE_RTE-X 973 1038 20 + . . scaffold939 TRF Tandem_Repeat 6879 6931 88 + . . scaffold939 GLEAN promoter 10387 11386 0.989675 + . ID=CGI_10008988; scaffold939 GLEAN mRNA 11387 20839 0.989675 + . ID=CGI_10008988; scaffold939 TRF Tandem_Repeat 14869 15000 246 + . . scaffold939 WUBlastX LINE_RTE-X 32601 32768 27 - . . scaffold939 WUBlastX LINE_RTE-X 33052 33147 25 - . . scaffold939 GLEAN promoter 37989 38988 0.772266 + . ID=CGI_10008989; scaffold939 GLEAN mRNA 38989 40548 0.772266 + . ID=CGI_10008989; scaffold939 TRF Tandem_Repeat 40835 40893 55 + . . scaffold939 TRF Tandem_Repeat 40835 40890 66 + . . scaffold939 WUBlastX LINE_L1 53778 54236 47 - . . scaffold939 WUBlastX LINE_L1-Tx1 53898 54272 118 - . . scaffold939 WUBlastX LINE_L1-Tx1 53907 54377 43 - . . scaffold939 GLEAN promoter 58040 59039 0.997413 + . ID=CGI_10008990; scaffold939 GLEAN mRNA 59040 60401 0.997413 + . ID=CGI_10008990; scaffold939 TRF Tandem_Repeat 60534 60592 100 + . . scaffold939 TRF Tandem_Repeat 60629 60722 188 + . . scaffold939 WUBlastX LTR_Gypsy 69989 70801 235 + . . scaffold939 WUBlastX LTR_Gypsy 70705 70968 34 + . . scaffold939 WUBlastX LTR_Gypsy 70867 73761 1388 + . . scaffold939 WUBlastX LTR_Gypsy 71416 73701 1459 + . . scaffold939 WUBlastX LTR_Gypsy 73682 74254 455 + . . scaffold939 WUBlastX LTR_Gypsy 74180 74326 25 + . . scaffold939 TRF Tandem_Repeat 80676 80831 122 + . . scaffold939 TRF Tandem_Repeat 80681 80831 61 + . . scaffold939 TRF Tandem_Repeat 80690 80831 97 + . . scaffold939 TRF Tandem_Repeat 80690 80810 113 + . . scaffold939 TRF Tandem_Repeat 90735 90809 136 + . . scaffold939 TRF Tandem_Repeat 91588 91723 144 + . . scaffold939 TRF Tandem_Repeat 91588 91723 144 + . . scaffold939 TRF Tandem_Repeat 91605 91722 136 + . . scaffold939 TRF Tandem_Repeat 91605 91706 63 + . . scaffold939 WUBlastX LTR_DIRS 102663 103361 137 - . . scaffold939 WUBlastX LTR_DIRS 102807 103361 279 - . . scaffold939 WUBlastX LTR_Gypsy 103005 103475 85 - . . scaffold939 WUBlastX LTR_Gypsy 103692 103790 26 - . . scaffold939 WUBlastX LTR_DIRS 103841 104224 136 - . . scaffold939 WUBlastX LTR_DIRS 104151 104252 48 - . . scaffold939 GLEAN mRNA 104320 109334 0.992629 - . ID=CGI_10008991; scaffold939 WUBlastX LTR_DIRS 104615 104803 33 - . . scaffold939 GLEAN promoter 109335 110334 0.992629 - . ID=CGI_10008991; scaffold939 TRF Tandem_Repeat 111375 111407 66 + . . scaffold939 GLEAN promoter 111778 112777 0.997242 + . ID=CGI_10008992; scaffold939 GLEAN mRNA 112778 128941 0.997242 + . ID=CGI_10008992; scaffold939 TRF Tandem_Repeat 117502 117538 74 + . . scaffold939 TRF Tandem_Repeat 117767 117875 78 + . . scaffold939 TRF Tandem_Repeat 117772 117859 104 + . . scaffold939 TRF Tandem_Repeat 117873 117923 102 + . . scaffold939 TRF Tandem_Repeat 120818 120860 50 + . . scaffold939 TRF Tandem_Repeat 122263 122296 68 + . . scaffold939 TRF Tandem_Repeat 123069 123095 54 + . . scaffold939 TRF Tandem_Repeat 126319 126557 352 + . . scaffold939 TRF Tandem_Repeat 127874 128091 283 + . . scaffold939 TRF Tandem_Repeat 130350 130376 54 + . . scaffold939 TRF Tandem_Repeat 133408 133503 174 + . . scaffold939 GLEAN promoter 134788 135787 0.470602 + . ID=CGI_10008993; scaffold939 GLEAN mRNA 135788 148457 0.470602 + . ID=CGI_10008993; scaffold939 TRF Tandem_Repeat 136604 136644 55 + . . scaffold939 WUBlastX DNA_TcMar-Tc1 148696 149724 452 - . . scaffold939 GLEAN mRNA 158314 159816 1 - . ID=CGI_10008994; scaffold939 GLEAN promoter 159817 160816 1 - . ID=CGI_10008994; scaffold939 GLEAN mRNA 162083 171196 0.999675 - . ID=CGI_10008995; scaffold939 TRF Tandem_Repeat 169142 169189 96 + . . scaffold939 TRF Tandem_Repeat 169252 169320 111 + . . scaffold939 GLEAN promoter 171197 172196 0.999675 - . ID=CGI_10008995; scaffold939 GLEAN mRNA 174178 176761 0.999258 - . ID=CGI_10008996; scaffold939 GLEAN promoter 176762 177761 0.999258 - . ID=CGI_10008996; scaffold939 TRF Tandem_Repeat 181904 181963 52 + . . scaffold939 TRF Tandem_Repeat 181907 181980 51 + . . scaffold939 TRF Tandem_Repeat 192965 193014 57 + . . scaffold939 GLEAN promoter 194007 195006 0.819596 + . ID=CGI_10008997; scaffold939 GLEAN mRNA 195007 216939 0.819596 + . ID=CGI_10008997; scaffold939 TRF Tandem_Repeat 208652 208688 51 + . . scaffold939 TRF Tandem_Repeat 208652 208688 51 + . . scaffold94 TRF Tandem_Repeat 10142 10187 92 + . . scaffold94 TRF Tandem_Repeat 13350 13397 96 + . . scaffold94 GLEAN promoter 18435 19434 0.999675 + . ID=CGI_10013906; scaffold94 GLEAN mRNA 19435 25346 0.999675 + . ID=CGI_10013906; scaffold94 GLEAN promoter 25246 26245 0.999372 + . ID=CGI_10013907; scaffold94 GLEAN mRNA 26246 26440 0.999372 + . ID=CGI_10013907; scaffold94 TRF Tandem_Repeat 32982 33040 100 + . . scaffold94 WUBlastX DNA_En-Spm 38212 39261 419 + . . scaffold94 TRF Tandem_Repeat 39998 40199 296 + . . scaffold94 TRF Tandem_Repeat 42123 42622 774 + . . scaffold94 GLEAN promoter 42492 43491 0.779981 + . ID=CGI_10013908; scaffold94 GLEAN mRNA 43492 50308 0.779981 + . ID=CGI_10013908; scaffold94 WUBlastX DNA_Maverick 49343 49636 108 + . . scaffold94 WUBlastX DNA_Sola 50180 50302 96 + . . scaffold94 WUBlastX DNA_Harbinger 54365 54823 103 + . . scaffold94 WUBlastX DNA_Harbinger 54395 54763 163 + . . scaffold94 WUBlastX DNA_Harbinger 55431 55544 116 + . . scaffold94 WUBlastX DNA_Harbinger 55720 55803 48 + . . scaffold94 WUBlastX DNA_Harbinger 55720 55782 55 + . . scaffold94 WUBlastX DNA_Harbinger 55939 56052 69 + . . scaffold94 WUBlastX DNA_Harbinger 56322 56582 98 + . . scaffold94 GLEAN promoter 62146 63145 0.773511 + . ID=CGI_10013909; scaffold94 GLEAN mRNA 63146 69508 0.773511 + . ID=CGI_10013909; scaffold94 WUBlastX LTR_Gypsy 63482 64069 93 + . . scaffold94 WUBlastX LTR_ERV1 64273 64476 24 + . . scaffold94 WUBlastX LTR_ERVK 64312 64422 42 + . . scaffold94 WUBlastX LTR_Gypsy 64327 64476 33 + . . scaffold94 WUBlastX LTR_Gypsy 64428 64976 28 + . . scaffold94 WUBlastX LTR_Gypsy 64578 65351 57 + . . scaffold94 WUBlastX LTR_Gypsy 64641 65012 62 + . . scaffold94 WUBlastX LTR_ERV1 64722 65063 64 + . . scaffold94 WUBlastX LTR_Gypsy 65314 65772 200 + . . scaffold94 WUBlastX LTR_Gypsy 65392 65769 248 + . . scaffold94 WUBlastX LTR_Gypsy 65550 66476 302 + . . scaffold94 WUBlastX LTR_Gypsy 65751 66698 175 + . . scaffold94 WUBlastX LTR_Gypsy 65754 66497 443 + . . scaffold94 WUBlastX LTR_Gypsy 66488 66799 121 + . . scaffold94 WUBlastX LTR_Gypsy 66667 66840 92 + . . scaffold94 WUBlastX LTR_Gypsy-Cigr 66667 66885 85 + . . scaffold94 WUBlastX LTR_Gypsy 66913 68427 582 + . . scaffold94 WUBlastX LTR_Gypsy-Cigr 67471 68613 376 + . . scaffold94 GLEAN promoter 68720 69719 0.991247 + . ID=CGI_10013910; scaffold94 GLEAN mRNA 69720 70037 0.991247 + . ID=CGI_10013910; scaffold94 WUBlastX DNA_Harbinger 70887 70997 63 + . . scaffold94 WUBlastX DNA_Harbinger 71058 71474 30 + . . scaffold94 WUBlastX DNA_Harbinger 71247 71540 44 + . . scaffold94 GLEAN mRNA 73090 94812 0.497561 - . ID=CGI_10013911; scaffold94 TRF Tandem_Repeat 76214 76261 78 + . . scaffold94 TRF Tandem_Repeat 82458 82502 90 + . . scaffold94 TRF Tandem_Repeat 84953 84991 78 + . . scaffold94 GLEAN promoter 94813 95812 0.497561 - . ID=CGI_10013911; scaffold94 TRF Tandem_Repeat 101056 101162 142 + . . scaffold94 TRF Tandem_Repeat 102636 102725 99 + . . scaffold94 TRF Tandem_Repeat 102691 102781 137 + . . scaffold94 GLEAN mRNA 104546 105247 0.99999 - . ID=CGI_10013912; scaffold94 WUBlastX LTR_Copia 105126 105176 25 - . . scaffold94 GLEAN promoter 105248 106247 0.99999 - . ID=CGI_10013912; scaffold94 WUBlastX LTR_Copia 105325 105576 33 - . . scaffold94 WUBlastX LTR_Gypsy 105367 106584 490 - . . scaffold94 WUBlastX LTR_Gypsy-Cigr 105544 106572 756 - . . scaffold94 GLEAN promoter 110860 111859 0.804225 + . ID=CGI_10013913; scaffold94 GLEAN mRNA 111860 132138 0.804225 + . ID=CGI_10013913; scaffold94 WUBlastX DNA_hAT-Blackja 118806 119738 558 + . . scaffold94 WUBlastX DNA_hAT-Blackja 119729 120112 58 + . . scaffold94 WUBlastX DNA_hAT-Blackja 119843 120664 168 + . . scaffold94 WUBlastX DNA_hAT-Blackja 120038 120616 178 + . . scaffold94 WUBlastX DNA_hAT-Blackja 120703 121077 171 + . . scaffold94 TRF Tandem_Repeat 130066 130445 362 + . . scaffold94 TRF Tandem_Repeat 134312 134346 52 + . . scaffold94 TRF Tandem_Repeat 135300 137802 3713 + . . scaffold94 TRF Tandem_Repeat 135300 137802 3747 + . . scaffold94 TRF Tandem_Repeat 138490 140830 3336 + . . scaffold94 TRF Tandem_Repeat 141936 142082 81 + . . scaffold94 TRF Tandem_Repeat 141943 142082 123 + . . scaffold94 GLEAN mRNA 142466 148305 0.97197 - . ID=CGI_10013914; scaffold94 TRF Tandem_Repeat 146085 146122 60 + . . scaffold94 GLEAN promoter 148306 149305 0.97197 - . ID=CGI_10013914; scaffold94 TRF Tandem_Repeat 149949 150626 1020 + . . scaffold94 TRF Tandem_Repeat 157060 157097 76 + . . scaffold94 TRF Tandem_Repeat 167630 167655 52 + . . scaffold94 TRF Tandem_Repeat 169560 169610 102 + . . scaffold94 TRF Tandem_Repeat 187985 188027 86 + . . scaffold94 GLEAN mRNA 208627 209363 0.536799 - . ID=CGI_10013915; scaffold94 GLEAN promoter 209364 210363 0.536799 - . ID=CGI_10013915; scaffold94 GLEAN mRNA 210467 213826 0.429564 - . ID=CGI_10013916; scaffold94 GLEAN promoter 213827 214826 0.429564 - . ID=CGI_10013916; scaffold94 GLEAN mRNA 215127 219497 1 - . ID=CGI_10013917; scaffold94 GLEAN promoter 219498 220497 1 - . ID=CGI_10013917; scaffold94 WUBlastX LINE_Penelope 221494 221889 168 + . . scaffold94 WUBlastX LINE_Penelope 221503 221964 102 + . . scaffold94 WUBlastX LINE_Penelope 221943 222152 28 + . . scaffold94 TRF Tandem_Repeat 222583 222915 400 + . . scaffold94 WUBlastX DNA_TcMar-Tc1 223352 224239 477 + . . scaffold94 TRF Tandem_Repeat 224439 225281 1129 + . . scaffold94 TRF Tandem_Repeat 224439 225281 1106 + . . scaffold94 TRF Tandem_Repeat 226222 226273 104 + . . scaffold94 GLEAN promoter 227013 228012 0.999954 + . ID=CGI_10013918; scaffold94 GLEAN mRNA 228013 233228 0.999954 + . ID=CGI_10013918; scaffold94 WUBlastX LINE_RTE-X 233557 234408 88 + . . scaffold94 WUBlastX LINE_RTE-X 233689 234399 401 + . . scaffold94 WUBlastX LINE_RTE-X 233710 234555 88 + . . scaffold94 TRF Tandem_Repeat 236012 236075 112 + . . scaffold94 WUBlastX DNA_Harbinger 237661 237972 147 + . . scaffold94 WUBlastX DNA_Harbinger 237709 237972 168 + . . scaffold94 GLEAN promoter 238838 239837 0.915918 + . ID=CGI_10013919; scaffold94 GLEAN mRNA 239838 248171 0.915918 + . ID=CGI_10013919; scaffold94 WUBlastX LINE_RTE-X 241049 241207 40 - . . scaffold94 TRF Tandem_Repeat 252217 252989 1135 + . . scaffold94 TRF Tandem_Repeat 256970 257023 72 + . . scaffold94 TRF Tandem_Repeat 256970 257023 56 + . . scaffold94 GLEAN promoter 262963 263962 1 + . ID=CGI_10013920; scaffold94 TRF Tandem_Repeat 263639 263692 108 + . . scaffold94 GLEAN mRNA 263963 264993 1 + . ID=CGI_10013920; scaffold94 GLEAN mRNA 266791 271344 0.999308 - . ID=CGI_10013921; scaffold94 GLEAN promoter 268365 269364 0.999372 + . ID=CGI_10013922; scaffold94 GLEAN mRNA 269365 269586 0.999372 + . ID=CGI_10013922; scaffold94 GLEAN promoter 271345 272344 0.999308 - . ID=CGI_10013921; scaffold94 GLEAN promoter 272659 273658 0.777738 + . ID=CGI_10013923; scaffold94 GLEAN mRNA 273659 275210 0.777738 + . ID=CGI_10013923; scaffold94 WUBlastX LINE_Penelope 292987 293142 27 + . . scaffold94 WUBlastX LINE_Penelope 293195 293302 24 + . . scaffold94 WUBlastX LINE_Penelope 293352 293828 34 + . . scaffold94 GLEAN promoter 296851 297850 1 + . ID=CGI_10013924; scaffold94 GLEAN mRNA 297851 299722 1 + . ID=CGI_10013924; scaffold94 TRF Tandem_Repeat 301229 301928 689 + . . scaffold94 GLEAN mRNA 307784 322279 0.561676 - . ID=CGI_10013925; scaffold94 TRF Tandem_Repeat 311912 311962 102 + . . scaffold94 GLEAN promoter 322280 323279 0.561676 - . ID=CGI_10013925; scaffold94 GLEAN promoter 326585 327584 1 + . ID=CGI_10013926; scaffold94 GLEAN mRNA 327585 328316 1 + . ID=CGI_10013926; scaffold94 GLEAN mRNA 331640 337036 0.999947 - . ID=CGI_10013927; scaffold94 GLEAN promoter 336612 337611 0.999676 + . ID=CGI_10013928; scaffold94 GLEAN promoter 337037 338036 0.999947 - . ID=CGI_10013927; scaffold94 GLEAN mRNA 337612 340609 0.999676 + . ID=CGI_10013928; scaffold94 GLEAN mRNA 345236 348326 0.628157 - . ID=CGI_10013929; scaffold94 TRF Tandem_Repeat 346930 347338 350 + . . scaffold94 TRF Tandem_Repeat 346930 347338 371 + . . scaffold94 TRF Tandem_Repeat 346930 347275 398 + . . scaffold94 GLEAN promoter 348327 349326 0.628157 - . ID=CGI_10013929; scaffold94 TRF Tandem_Repeat 349700 349745 58 + . . scaffold94 GLEAN promoter 350047 351046 1 + . ID=CGI_10013930; scaffold94 GLEAN mRNA 351047 363674 1 + . ID=CGI_10013930; scaffold94 TRF Tandem_Repeat 365098 365191 63 + . . scaffold94 TRF Tandem_Repeat 365322 365416 79 + . . scaffold94 TRF Tandem_Repeat 367145 367193 98 + . . scaffold94 GLEAN mRNA 368012 368392 0.999999 - . ID=CGI_10013931; scaffold94 GLEAN promoter 368393 369392 0.999999 - . ID=CGI_10013931; scaffold941 GLEAN mRNA 130 1732 1 - . ID=CGI_10003702; scaffold941 TRF Tandem_Repeat 654 892 327 + . . scaffold941 GLEAN promoter 1733 2732 1 - . ID=CGI_10003702; scaffold941 TRF Tandem_Repeat 2120 2166 94 + . . scaffold941 TRF Tandem_Repeat 2435 2486 104 + . . scaffold941 TRF Tandem_Repeat 3097 3148 104 + . . scaffold941 GLEAN promoter 9397 10396 0.999642 + . ID=CGI_10003703; scaffold941 GLEAN mRNA 10397 12112 0.999642 + . ID=CGI_10003703; scaffold941 TRF Tandem_Repeat 12460 12517 82 + . . scaffold941 WUBlastX LTR_Gypsy 19530 20246 311 + . . scaffold941 WUBlastX LTR_Gypsy 19530 20126 491 + . . scaffold941 WUBlastX LTR_Gypsy 20379 20453 24 + . . scaffold941 WUBlastX LTR_Gypsy 20609 20683 24 + . . scaffold941 WUBlastX LINE_L1-Tx1 22578 22622 25 + . . scaffold941 WUBlastX LINE_L1-Tx1 24022 24219 21 - . . scaffold941 WUBlastX LINE_L1-Tx1 24243 24536 42 - . . scaffold941 WUBlastX LINE_L1 24899 25075 57 - . . scaffold941 WUBlastX LINE_L1-Tx1 24932 25090 64 - . . scaffold941 TRF Tandem_Repeat 25380 25433 99 + . . scaffold941 GLEAN mRNA 29013 31940 0.468623 - . ID=CGI_10003704; scaffold941 GLEAN promoter 31941 32940 0.468623 - . ID=CGI_10003704; scaffold941 WUBlastX DNA_TcMar-Marin 33384 33482 32 - . . scaffold941 WUBlastX DNA_TcMar-Tc1 33400 34053 230 - . . scaffold941 WUBlastX DNA_TcMar-Tc1 33496 34212 58 - . . scaffold941 WUBlastX DNA_TcMar-Tc1 33538 34053 275 - . . scaffold941 WUBlastX DNA_TcMar-Tc1 34080 34277 20 - . . scaffold941 TRF Tandem_Repeat 65019 65236 219 + . . scaffold941 TRF Tandem_Repeat 66094 66135 75 + . . scaffold941 GLEAN promoter 74289 75288 0.738574 + . ID=CGI_10003705; scaffold941 GLEAN mRNA 75289 79391 0.738574 + . ID=CGI_10003705; scaffold942 TRF Tandem_Repeat 1159 1188 60 + . . scaffold942 GLEAN mRNA 10875 12151 1 - . ID=CGI_10019150; scaffold942 GLEAN promoter 12152 13151 1 - . ID=CGI_10019150; scaffold942 TRF Tandem_Repeat 32999 33073 150 + . . scaffold942 GLEAN promoter 34157 35156 0.999976 + . ID=CGI_10019151; scaffold942 GLEAN mRNA 35157 36662 0.999976 + . ID=CGI_10019151; scaffold942 GLEAN mRNA 38493 49974 1 - . ID=CGI_10019152; scaffold942 TRF Tandem_Repeat 45998 46247 92 + . . scaffold942 TRF Tandem_Repeat 47158 47924 1028 + . . scaffold942 GLEAN promoter 49975 50974 1 - . ID=CGI_10019152; scaffold942 WUBlastX LINE_RTE-X 64002 64271 23 - . . scaffold942 WUBlastX LINE_RTE-X 64110 64382 50 - . . scaffold942 WUBlastX LTR_Gypsy 84152 84631 202 + . . scaffold942 WUBlastX LTR_Gypsy 84287 84844 173 + . . scaffold942 WUBlastX LINE_CR1 86703 86756 30 + . . scaffold942 WUBlastX LINE_CR1 87162 87545 47 + . . scaffold942 WUBlastX LINE_L1 87502 87564 27 + . . scaffold942 WUBlastX LINE_R2 87570 87653 20 + . . scaffold942 WUBlastX LINE_Odin 87624 87956 24 + . . scaffold942 WUBlastX LINE_L1 88417 89355 344 + . . scaffold942 WUBlastX LINE_L1-Tx1 88441 89229 453 + . . scaffold942 WUBlastX LINE_L1-Tx1 89199 89498 97 + . . scaffold942 WUBlastX LINE_L1-Tx1 89265 90290 28 + . . scaffold942 WUBlastX LINE_L1-Tx1 89286 89567 90 + . . scaffold942 WUBlastX LINE_L1-Tx1 89480 89701 42 + . . scaffold942 WUBlastX LINE_L1 89483 89647 43 + . . scaffold942 WUBlastX LINE_L1-Tx1 89483 89788 35 + . . scaffold942 WUBlastX LINE_L1-Tx1 90914 92977 478 - . . scaffold942 WUBlastX LINE_L1 92018 93010 498 - . . scaffold942 WUBlastX LINE_L1-Tx1 93054 93746 160 - . . scaffold942 WUBlastX LINE_L1 93778 94023 61 - . . scaffold942 WUBlastX LINE_L1-Tx1 93926 94528 139 - . . scaffold942 WUBlastX LINE_L1 94025 96280 491 - . . scaffold942 WUBlastX LINE_L1 96255 96452 32 - . . scaffold942 WUBlastX LINE_L1-Tx1 96258 96416 87 - . . scaffold942 WUBlastX LINE_CR1-L2 97697 98116 118 - . . scaffold942 TRF Tandem_Repeat 101048 101087 62 + . . scaffold942 GLEAN mRNA 107296 111895 0.273726 - . ID=CGI_10019153; scaffold942 GLEAN promoter 111896 112895 0.273726 - . ID=CGI_10019153; scaffold942 GLEAN promoter 112666 113665 0.300224 + . ID=CGI_10019154; scaffold942 GLEAN mRNA 113666 137722 0.300224 + . ID=CGI_10019154; scaffold942 WUBlastX LINE_Penelope 114725 115438 140 + . . scaffold942 WUBlastX LINE_Penelope 114740 115303 147 + . . scaffold942 WUBlastX DNA_PiggyBac 124204 124674 196 - . . scaffold942 WUBlastX DNA_PiggyBac 124694 125830 562 - . . scaffold942 TRF Tandem_Repeat 127674 127707 50 + . . scaffold942 TRF Tandem_Repeat 149849 149881 50 + . . scaffold942 TRF Tandem_Repeat 155362 155410 55 + . . scaffold942 TRF Tandem_Repeat 157194 157890 1007 + . . scaffold942 WUBlastX LINE_RTE-X 160102 160293 20 + . . scaffold942 GLEAN promoter 166859 167858 0.24351 + . ID=CGI_10019155; scaffold942 GLEAN mRNA 167859 210633 0.24351 + . ID=CGI_10019155; scaffold942 TRF Tandem_Repeat 177262 177314 106 + . . scaffold942 TRF Tandem_Repeat 211361 211391 53 + . . scaffold942 TRF Tandem_Repeat 212653 212687 70 + . . scaffold942 WUBlastX LINE_RTE-X 215637 216125 73 + . . scaffold942 WUBlastX LINE_RTE-X 215706 216116 109 + . . scaffold942 GLEAN mRNA 217570 223150 0.987506 - . ID=CGI_10019156; scaffold942 GLEAN promoter 223151 224150 0.987506 - . ID=CGI_10019156; scaffold942 WUBlastX LTR_Pao 225834 230666 2679 - . . scaffold942 WUBlastX LTR_Pao 228258 231098 951 - . . scaffold942 GLEAN promoter 231617 232616 1 + . ID=CGI_10019157; scaffold942 GLEAN mRNA 232617 233027 1 + . ID=CGI_10019157; scaffold942 TRF Tandem_Repeat 233768 234760 964 + . . scaffold942 TRF Tandem_Repeat 239059 239108 100 + . . scaffold942 GLEAN promoter 240358 241357 1 + . ID=CGI_10019158; scaffold942 GLEAN mRNA 241358 241798 1 + . ID=CGI_10019158; scaffold942 WUBlastX LINE_RTE-X 244159 244227 29 + . . scaffold942 WUBlastX LINE_RTE-X 244397 244570 38 + . . scaffold942 GLEAN mRNA 247832 252537 0.97526 - . ID=CGI_10019159; scaffold942 GLEAN promoter 252538 253537 0.97526 - . ID=CGI_10019159; scaffold942 GLEAN mRNA 252961 269639 0.793856 - . ID=CGI_10019160; scaffold942 TRF Tandem_Repeat 265747 265908 192 + . . scaffold942 GLEAN promoter 269640 270639 0.793856 - . ID=CGI_10019160; scaffold942 TRF Tandem_Repeat 273170 273216 94 + . . scaffold942 GLEAN promoter 273690 274689 0.99178 + . ID=CGI_10019161; scaffold942 TRF Tandem_Repeat 274151 274181 62 + . . scaffold942 GLEAN mRNA 274690 297615 0.99178 + . ID=CGI_10019161; scaffold942 TRF Tandem_Repeat 293144 293213 54 + . . scaffold942 GLEAN promoter 296644 297643 0.876986 + . ID=CGI_10019162; scaffold942 GLEAN mRNA 297644 325341 0.876986 + . ID=CGI_10019162; scaffold942 TRF Tandem_Repeat 303010 303218 201 + . . scaffold942 TRF Tandem_Repeat 306230 306295 132 + . . scaffold942 GLEAN mRNA 329861 331323 0.999661 - . ID=CGI_10019163; scaffold942 GLEAN promoter 331324 332323 0.999661 - . ID=CGI_10019163; scaffold942 TRF Tandem_Repeat 333512 333562 102 + . . scaffold942 GLEAN mRNA 337553 340971 0.999921 - . ID=CGI_10019164; scaffold942 GLEAN promoter 340972 341971 0.999921 - . ID=CGI_10019164; scaffold942 GLEAN mRNA 341388 349228 0.998888 - . ID=CGI_10019165; scaffold942 TRF Tandem_Repeat 341994 342062 138 + . . scaffold942 TRF Tandem_Repeat 344154 344199 92 + . . scaffold942 WUBlastX LTR_Pao 344392 344736 158 - . . scaffold942 GLEAN promoter 349229 350228 0.998888 - . ID=CGI_10019165; scaffold942 TRF Tandem_Repeat 350303 350333 62 + . . scaffold942 TRF Tandem_Repeat 352777 352832 60 + . . scaffold942 GLEAN promoter 353978 354977 0.999087 + . ID=CGI_10019166; scaffold942 GLEAN mRNA 354978 358478 0.999087 + . ID=CGI_10019166; scaffold942 GLEAN promoter 361204 362203 0.999087 + . ID=CGI_10019167; scaffold942 GLEAN mRNA 362204 367896 0.999087 + . ID=CGI_10019167; scaffold942 TRF Tandem_Repeat 366386 366433 96 + . . scaffold942 GLEAN promoter 369123 370122 0.990802 + . ID=CGI_10019168; scaffold942 GLEAN mRNA 370123 377381 0.990802 + . ID=CGI_10019168; scaffold942 GLEAN promoter 378980 379979 0.999995 + . ID=CGI_10019169; scaffold942 TRF Tandem_Repeat 379421 379482 124 + . . scaffold942 GLEAN mRNA 379980 387843 0.999995 + . ID=CGI_10019169; scaffold942 TRF Tandem_Repeat 390098 390295 353 + . . scaffold942 GLEAN mRNA 390660 406366 0.734087 - . ID=CGI_10019170; scaffold942 TRF Tandem_Repeat 393593 393617 50 + . . scaffold942 TRF Tandem_Repeat 395443 395491 98 + . . scaffold942 WUBlastX DNA_TcMar-Tc1 396242 396808 210 + . . scaffold942 WUBlastX DNA_TcMar-Tc1 396811 397032 117 + . . scaffold942 WUBlastX DNA_TcMar-Tc1 396847 397074 87 + . . scaffold942 WUBlastX DNA_TcMar-Tc1 397029 397151 76 + . . scaffold942 TRF Tandem_Repeat 405052 405081 60 + . . scaffold942 TRF Tandem_Repeat 405235 405266 64 + . . scaffold942 TRF Tandem_Repeat 405264 405301 76 + . . scaffold942 GLEAN promoter 406367 407366 0.734087 - . ID=CGI_10019170; scaffold942 GLEAN mRNA 408181 422225 0.996987 - . ID=CGI_10019171; scaffold942 GLEAN promoter 421761 422760 0.648556 + . ID=CGI_10019172; scaffold942 GLEAN promoter 422226 423225 0.996987 - . ID=CGI_10019171; scaffold942 GLEAN mRNA 422761 424329 0.648556 + . ID=CGI_10019172; scaffold942 GLEAN promoter 424321 425320 0.999624 + . ID=CGI_10019173; scaffold942 GLEAN mRNA 425321 436734 0.999624 + . ID=CGI_10019173; scaffold942 TRF Tandem_Repeat 428558 428615 116 + . . scaffold942 TRF Tandem_Repeat 430878 430925 96 + . . scaffold942 GLEAN mRNA 440952 451561 1 - . ID=CGI_10019174; scaffold942 TRF Tandem_Repeat 442761 443720 1366 + . . scaffold942 TRF Tandem_Repeat 445573 445947 588 + . . scaffold942 TRF Tandem_Repeat 446776 447666 1147 + . . scaffold942 GLEAN promoter 451562 452561 1 - . ID=CGI_10019174; scaffold942 GLEAN mRNA 453741 458949 0.999676 - . ID=CGI_10019175; scaffold942 GLEAN promoter 458950 459949 0.999676 - . ID=CGI_10019175; scaffold942 GLEAN promoter 463457 464456 0.28125 + . ID=CGI_10019176; scaffold942 GLEAN mRNA 464457 481913 0.28125 + . ID=CGI_10019176; scaffold942 TRF Tandem_Repeat 468785 469142 443 + . . scaffold942 TRF Tandem_Repeat 478959 479837 1244 + . . scaffold942 TRF Tandem_Repeat 480781 480927 73 + . . scaffold942 TRF Tandem_Repeat 480843 480972 93 + . . scaffold942 GLEAN promoter 482786 483785 0.920284 + . ID=CGI_10019177; scaffold942 GLEAN mRNA 483786 498239 0.920284 + . ID=CGI_10019177; scaffold942 TRF Tandem_Repeat 485474 485498 50 + . . scaffold942 TRF Tandem_Repeat 498852 499080 253 + . . scaffold942 TRF Tandem_Repeat 500478 500691 267 + . . scaffold942 TRF Tandem_Repeat 501368 501895 663 + . . scaffold942 TRF Tandem_Repeat 501368 502009 680 + . . scaffold942 TRF Tandem_Repeat 502510 502559 100 + . . scaffold942 TRF Tandem_Repeat 505553 505604 104 + . . scaffold942 TRF Tandem_Repeat 539448 539699 151 + . . scaffold942 TRF Tandem_Repeat 539495 539674 105 + . . scaffold942 TRF Tandem_Repeat 540393 540505 91 + . . scaffold942 TRF Tandem_Repeat 546227 546286 111 + . . scaffold942 WUBlastX DNA_TcMar-Marin 550938 551339 40 - . . scaffold942 WUBlastX DNA_TcMar-Marin 550998 551336 129 - . . scaffold942 WUBlastX LINE_CR1-L2 553506 554069 95 + . . scaffold942 TRF Tandem_Repeat 574059 574118 111 + . . scaffold942 TRF Tandem_Repeat 576049 576094 92 + . . scaffold942 TRF Tandem_Repeat 579859 579888 51 + . . scaffold943 GLEAN mRNA 107576 109996 1 - . ID=CGI_10005129; scaffold943 GLEAN promoter 109997 110996 1 - . ID=CGI_10005129; scaffold943 GLEAN promoter 111337 112336 0.99761 + . ID=CGI_10005130; scaffold943 GLEAN mRNA 112337 119237 0.99761 + . ID=CGI_10005130; scaffold944 TRF Tandem_Repeat 3783 3813 62 + . . scaffold944 GLEAN promoter 12621 13620 0.5252 + . ID=CGI_10005964; scaffold944 GLEAN mRNA 13621 24256 0.5252 + . ID=CGI_10005964; scaffold944 TRF Tandem_Repeat 27303 27362 111 + . . scaffold944 TRF Tandem_Repeat 28824 28906 166 + . . scaffold944 TRF Tandem_Repeat 37727 37775 98 + . . scaffold944 TRF Tandem_Repeat 37842 37873 64 + . . scaffold944 TRF Tandem_Repeat 42975 43013 60 + . . scaffold944 TRF Tandem_Repeat 43726 43774 89 + . . scaffold944 TRF Tandem_Repeat 47135 47177 86 + . . scaffold944 GLEAN promoter 49051 50050 1 + . ID=CGI_10005966; scaffold944 GLEAN mRNA 50051 50937 1 + . ID=CGI_10005966; scaffold944 GLEAN promoter 50956 51955 0.999957 + . ID=CGI_10005967; scaffold944 GLEAN mRNA 51956 56582 0.999957 + . ID=CGI_10005967; scaffold944 TRF Tandem_Repeat 53351 53421 135 + . . scaffold944 TRF Tandem_Repeat 68177 68209 66 + . . scaffold944 TRF Tandem_Repeat 75364 75402 78 + . . scaffold944 TRF Tandem_Repeat 75841 75871 62 + . . scaffold944 TRF Tandem_Repeat 78344 78453 211 + . . scaffold944 TRF Tandem_Repeat 85447 85479 57 + . . scaffold944 GLEAN mRNA 89046 90287 0.999661 - . ID=CGI_10005968; scaffold944 GLEAN promoter 90288 91287 0.999661 - . ID=CGI_10005968; scaffold944 TRF Tandem_Repeat 90953 90989 74 + . . scaffold944 TRF Tandem_Repeat 96514 96578 116 + . . scaffold944 TRF Tandem_Repeat 99500 99538 78 + . . scaffold944 TRF Tandem_Repeat 101314 101359 85 + . . scaffold944 TRF Tandem_Repeat 119798 119844 94 + . . scaffold944 TRF Tandem_Repeat 135711 135790 160 + . . scaffold944 WUBlastX LINE_L1 135918 136409 43 - . . scaffold944 TRF Tandem_Repeat 140591 140669 149 + . . scaffold944 TRF Tandem_Repeat 140737 140773 65 + . . scaffold946 GLEAN mRNA 1900 2761 0.999999 - . ID=CGI_10000506; scaffold946 GLEAN promoter 2762 3761 0.999999 - . ID=CGI_10000506; scaffold947 GLEAN mRNA 2324 11721 0.390701 - . ID=CGI_10003996; scaffold947 GLEAN promoter 11722 12721 0.390701 - . ID=CGI_10003996; scaffold947 GLEAN promoter 72081 73080 0.960262 + . ID=CGI_10003997; scaffold947 GLEAN mRNA 73081 78571 0.960262 + . ID=CGI_10003997; scaffold947 GLEAN mRNA 83431 88200 0.728755 - . ID=CGI_10003998; scaffold947 GLEAN promoter 88201 88305 0.728755 - . ID=CGI_10003998; scaffold948 TRF Tandem_Repeat 3201 3246 92 + . . scaffold948 WUBlastX LTR_Pao 71432 71608 35 - . . scaffold948 WUBlastX LTR_Pao 71480 71704 60 - . . scaffold948 WUBlastX LTR_Gypsy 71624 73888 655 - . . scaffold948 WUBlastX LTR_Gypsy 71690 72970 746 - . . scaffold948 TRF Tandem_Repeat 100711 100752 50 + . . scaffold948 WUBlastX DNA_IS4EU 107507 107719 69 + . . scaffold948 WUBlastX DNA_IS4EU 107718 107792 26 + . . scaffold948 WUBlastX DNA_IS4EU 107727 107843 20 + . . scaffold948 TRF Tandem_Repeat 111739 111794 69 + . . scaffold948 TRF Tandem_Repeat 134998 135030 57 + . . scaffold948 TRF Tandem_Repeat 135098 135187 180 + . . scaffold948 GLEAN promoter 147664 148663 0.999679 + . ID=CGI_10020009; scaffold948 GLEAN mRNA 148664 154285 0.999679 + . ID=CGI_10020009; scaffold948 GLEAN promoter 153424 154423 0.999229 + . ID=CGI_10020010; scaffold948 GLEAN mRNA 154424 155263 0.999229 + . ID=CGI_10020010; scaffold948 GLEAN promoter 161025 162024 0.528485 + . ID=CGI_10020011; scaffold948 GLEAN mRNA 162025 163611 0.528485 + . ID=CGI_10020011; scaffold948 TRF Tandem_Repeat 165248 165413 147 + . . scaffold948 WUBlastX LINE_RTE-X 167601 168767 322 - . . scaffold948 WUBlastX LINE_RTE-X 167625 168974 259 - . . scaffold948 TRF Tandem_Repeat 169592 169972 753 + . . scaffold948 WUBlastX LTR_Gypsy 170078 170668 65 - . . scaffold948 WUBlastX LTR_Gypsy 170081 170527 103 - . . scaffold948 TRF Tandem_Repeat 178567 179357 1278 + . . scaffold948 TRF Tandem_Repeat 180424 181801 2551 + . . scaffold948 TRF Tandem_Repeat 181487 181557 52 + . . scaffold948 GLEAN mRNA 181792 186863 0.837819 - . ID=CGI_10020012; scaffold948 TRF Tandem_Repeat 182569 183028 694 + . . scaffold948 GLEAN promoter 186864 187863 0.837819 - . ID=CGI_10020012; scaffold948 GLEAN promoter 203208 204207 0.99963 + . ID=CGI_10020013; scaffold948 GLEAN mRNA 204208 205107 0.99963 + . ID=CGI_10020013; scaffold948 GLEAN mRNA 207414 212407 0.887826 - . ID=CGI_10020014; scaffold948 TRF Tandem_Repeat 208623 208659 74 + . . scaffold948 GLEAN promoter 212408 213407 0.887826 - . ID=CGI_10020014; scaffold948 GLEAN promoter 218200 219199 0.0278138 + . ID=CGI_10020015; scaffold948 TRF Tandem_Repeat 218239 218268 51 + . . scaffold948 GLEAN mRNA 219200 300594 0.0278138 + . ID=CGI_10020015; scaffold948 GLEAN mRNA 230438 231430 0.99772 - . ID=CGI_10020016; scaffold948 GLEAN promoter 231431 232430 0.99772 - . ID=CGI_10020016; scaffold948 TRF Tandem_Repeat 234410 234559 264 + . . scaffold948 TRF Tandem_Repeat 238047 238130 150 + . . scaffold948 TRF Tandem_Repeat 256187 256608 799 + . . scaffold948 TRF Tandem_Repeat 260867 261094 370 + . . scaffold948 TRF Tandem_Repeat 260872 261022 92 + . . scaffold948 TRF Tandem_Repeat 260924 261069 116 + . . scaffold948 TRF Tandem_Repeat 268060 268111 61 + . . scaffold948 TRF Tandem_Repeat 273259 273307 89 + . . scaffold948 TRF Tandem_Repeat 275738 275774 56 + . . scaffold948 TRF Tandem_Repeat 278837 278866 60 + . . scaffold948 TRF Tandem_Repeat 285015 285042 56 + . . scaffold948 WUBlastX LINE_RTE-BovB 316279 316581 48 + . . scaffold948 WUBlastX LINE_RTE-BovB 316616 316786 70 + . . scaffold948 WUBlastX LINE_RTE-BovB 317592 318089 61 + . . scaffold948 WUBlastX LINE_RTE-BovB 317709 317891 75 + . . scaffold948 WUBlastX LINE_RTE-BovB 317748 318371 78 + . . scaffold948 GLEAN mRNA 318588 322447 0.614411 - . ID=CGI_10020017; scaffold948 TRF Tandem_Repeat 321547 321587 82 + . . scaffold948 GLEAN promoter 322448 323447 0.614411 - . ID=CGI_10020017; scaffold948 GLEAN mRNA 326300 330942 0.750485 - . ID=CGI_10020018; scaffold948 GLEAN promoter 330943 331942 0.750485 - . ID=CGI_10020018; scaffold948 GLEAN mRNA 368686 382256 0.724047 - . ID=CGI_10020019; scaffold948 TRF Tandem_Repeat 371829 371859 62 + . . scaffold948 TRF Tandem_Repeat 380563 380614 95 + . . scaffold948 TRF Tandem_Repeat 380711 380770 97 + . . scaffold948 GLEAN promoter 382257 383256 0.724047 - . ID=CGI_10020019; scaffold948 GLEAN mRNA 382854 408323 0.819427 - . ID=CGI_10020020; scaffold948 GLEAN promoter 389705 390704 0.99894 + . ID=CGI_10020021; scaffold948 GLEAN mRNA 390705 390902 0.99894 + . ID=CGI_10020021; scaffold948 GLEAN promoter 391915 392914 0.999372 + . ID=CGI_10020022; scaffold948 GLEAN mRNA 392915 393307 0.999372 + . ID=CGI_10020022; scaffold948 TRF Tandem_Repeat 406583 406634 77 + . . scaffold948 GLEAN promoter 408324 409323 0.819427 - . ID=CGI_10020020; scaffold948 GLEAN mRNA 408711 412003 0.956597 - . ID=CGI_10020023; scaffold948 GLEAN promoter 412004 413003 0.956597 - . ID=CGI_10020023; scaffold948 GLEAN mRNA 412682 418646 0.813847 - . ID=CGI_10020024; scaffold948 TRF Tandem_Repeat 415859 415920 124 + . . scaffold948 WUBlastX LTR_Pao 417891 418457 25 - . . scaffold948 GLEAN promoter 418647 419646 0.813847 - . ID=CGI_10020024; scaffold948 GLEAN mRNA 422275 439043 0.353788 - . ID=CGI_10020025; scaffold948 TRF Tandem_Repeat 428154 428180 54 + . . scaffold948 TRF Tandem_Repeat 428180 428242 126 + . . scaffold948 GLEAN promoter 428829 429828 0.999316 + . ID=CGI_10020026; scaffold948 GLEAN mRNA 429829 430026 0.999316 + . ID=CGI_10020026; scaffold948 GLEAN promoter 430698 431697 0.481133 + . ID=CGI_10020027; scaffold948 GLEAN promoter 431494 432493 0.474366 + . ID=CGI_10020028; scaffold948 GLEAN mRNA 431698 432054 0.481133 + . ID=CGI_10020027; scaffold948 GLEAN mRNA 432494 443898 0.474366 + . ID=CGI_10020028; scaffold948 GLEAN promoter 439044 440043 0.353788 - . ID=CGI_10020025; scaffold948 GLEAN mRNA 445612 447279 0.999676 - . ID=CGI_10020029; scaffold948 GLEAN promoter 446363 447362 0.937847 + . ID=CGI_10020030; scaffold948 GLEAN promoter 447280 448279 0.999676 - . ID=CGI_10020029; scaffold948 GLEAN mRNA 447363 449749 0.937847 + . ID=CGI_10020030; scaffold948 GLEAN mRNA 467297 469030 0.99904 - . ID=CGI_10020031; scaffold948 GLEAN promoter 469031 470030 0.99904 - . ID=CGI_10020031; scaffold948 GLEAN mRNA 479929 485578 1 - . ID=CGI_10020032; scaffold948 TRF Tandem_Repeat 483478 483559 85 + . . scaffold948 TRF Tandem_Repeat 484028 484163 156 + . . scaffold948 TRF Tandem_Repeat 484028 484163 184 + . . scaffold948 GLEAN promoter 485579 486578 1 - . ID=CGI_10020032; scaffold948 TRF Tandem_Repeat 490252 490328 154 + . . scaffold948 TRF Tandem_Repeat 499487 499526 80 + . . scaffold948 TRF Tandem_Repeat 508900 508988 151 + . . scaffold948 TRF Tandem_Repeat 510543 510621 77 + . . scaffold948 GLEAN promoter 520686 521685 1 + . ID=CGI_10020033; scaffold948 GLEAN mRNA 521686 522156 1 + . ID=CGI_10020033; scaffold948 TRF Tandem_Repeat 522772 522835 87 + . . scaffold948 TRF Tandem_Repeat 532028 532060 66 + . . scaffold948 TRF Tandem_Repeat 543897 543938 84 + . . scaffold948 TRF Tandem_Repeat 556678 556734 80 + . . scaffold948 TRF Tandem_Repeat 562100 562165 89 + . . scaffold948 TRF Tandem_Repeat 574237 574566 409 + . . scaffold948 GLEAN promoter 615087 616086 1 + . ID=CGI_10020034; scaffold948 GLEAN mRNA 616087 620779 1 + . ID=CGI_10020034; scaffold948 TRF Tandem_Repeat 616419 616566 156 + . . scaffold949 GLEAN mRNA 55 3811 0.998615 - . ID=CGI_10001248; scaffold949 GLEAN promoter 3812 4811 0.998615 - . ID=CGI_10001248; scaffold949 GLEAN promoter 4716 5715 0.544852 + . ID=CGI_10001249; scaffold949 GLEAN mRNA 5716 13227 0.544852 + . ID=CGI_10001249; scaffold950 TRF Tandem_Repeat 3871 4675 932 + . . scaffold950 WUBlastX LTR_DIRS 5173 6117 270 - . . scaffold950 WUBlastX LTR_DIRS 6003 6374 214 - . . scaffold950 WUBlastX LTR_DIRS 6380 7069 458 - . . scaffold950 WUBlastX LTR_Gypsy 7056 7547 54 - . . scaffold950 WUBlastX LTR_DIRS 7149 7766 410 - . . scaffold950 WUBlastX LTR_DIRS 7765 7938 60 - . . scaffold950 WUBlastX LTR_DIRS 7774 8031 58 - . . scaffold950 WUBlastX LTR_DIRS 7834 8076 47 - . . scaffold950 WUBlastX LTR_DIRS 8075 8365 79 - . . scaffold950 WUBlastX LTR_DIRS 8132 8359 113 - . . scaffold950 WUBlastX LTR_DIRS 8371 8640 55 - . . scaffold950 WUBlastX LINE_CR1 8371 8922 20 - . . scaffold950 WUBlastX LTR_DIRS 8434 8643 79 - . . scaffold950 TRF Tandem_Repeat 12459 12508 100 + . . scaffold950 TRF Tandem_Repeat 12709 12755 76 + . . scaffold950 GLEAN mRNA 14059 14407 0.903154 - . ID=CGI_10022917; scaffold950 GLEAN promoter 14408 15407 0.903154 - . ID=CGI_10022917; scaffold950 TRF Tandem_Repeat 16072 16208 193 + . . scaffold950 TRF Tandem_Repeat 28293 28343 102 + . . scaffold950 WUBlastX LINE_CR1-L2 32667 33755 315 + . . scaffold950 WUBlastX LINE_CR1-L2 34347 35534 525 + . . scaffold950 TRF Tandem_Repeat 38906 38962 114 + . . scaffold950 TRF Tandem_Repeat 40740 40814 150 + . . scaffold950 TRF Tandem_Repeat 43362 43412 102 + . . scaffold950 GLEAN promoter 44484 45483 0.326384 + . ID=CGI_10022918; scaffold950 GLEAN mRNA 45484 50998 0.326384 + . ID=CGI_10022918; scaffold950 TRF Tandem_Repeat 46376 47466 883 + . . scaffold950 WUBlastX LINE_Rex-Babar 48809 48913 29 + . . scaffold950 WUBlastX LINE_CR1 49178 49303 20 + . . scaffold950 WUBlastX LINE_CR1-L2 49847 50980 501 + . . scaffold950 TRF Tandem_Repeat 51495 51729 247 + . . scaffold950 TRF Tandem_Repeat 55024 55060 74 + . . scaffold950 TRF Tandem_Repeat 57007 57068 124 + . . scaffold950 TRF Tandem_Repeat 60182 60227 51 + . . scaffold950 TRF Tandem_Repeat 69895 69923 58 + . . scaffold950 TRF Tandem_Repeat 73570 73623 108 + . . scaffold950 TRF Tandem_Repeat 74263 74302 80 + . . scaffold950 TRF Tandem_Repeat 82000 82053 108 + . . scaffold950 GLEAN mRNA 86388 112962 1 - . ID=CGI_10022920; scaffold950 TRF Tandem_Repeat 97361 97446 86 + . . scaffold950 WUBlastX LINE_L1-Tx1 101197 101556 151 + . . scaffold950 WUBlastX DNA_TcMar-Tc2 107609 107998 129 - . . scaffold950 WUBlastX DNA_TcMar-Pogo 107705 108073 81 - . . scaffold950 WUBlastX DNA_TcMar-Tc2 108094 108936 139 - . . scaffold950 WUBlastX DNA_TcMar-Tc2 108160 108546 146 - . . scaffold950 TRF Tandem_Repeat 109560 110501 1275 + . . scaffold950 GLEAN promoter 112963 113962 1 - . ID=CGI_10022920; scaffold950 GLEAN promoter 119921 120920 0.996917 + . ID=CGI_10022921; scaffold950 GLEAN mRNA 120921 143232 0.996917 + . ID=CGI_10022921; scaffold950 WUBlastX LTR_DIRS 120966 121109 77 - . . scaffold950 TRF Tandem_Repeat 128561 128649 63 + . . scaffold950 TRF Tandem_Repeat 130352 130448 83 + . . scaffold950 TRF Tandem_Repeat 130887 130926 53 + . . scaffold950 TRF Tandem_Repeat 130957 132245 1887 + . . scaffold950 TRF Tandem_Repeat 137402 137434 66 + . . scaffold950 TRF Tandem_Repeat 142503 142599 70 + . . scaffold950 GLEAN promoter 142933 143932 0.999579 + . ID=CGI_10022922; scaffold950 GLEAN mRNA 143933 145852 0.999579 + . ID=CGI_10022922; scaffold950 TRF Tandem_Repeat 147162 147186 50 + . . scaffold950 TRF Tandem_Repeat 156475 156897 747 + . . scaffold950 TRF Tandem_Repeat 157455 158362 968 + . . scaffold950 TRF Tandem_Repeat 157455 158005 949 + . . scaffold950 GLEAN promoter 158231 159230 0.94663 + . ID=CGI_10022923; scaffold950 WUBlastX DNA_TcMar-Pogo 159203 159517 30 + . . scaffold950 GLEAN mRNA 159231 177477 0.94663 + . ID=CGI_10022923; scaffold950 TRF Tandem_Repeat 178471 178520 82 + . . scaffold950 TRF Tandem_Repeat 179622 179665 88 + . . scaffold950 TRF Tandem_Repeat 181509 181625 82 + . . scaffold950 TRF Tandem_Repeat 181509 181625 73 + . . scaffold950 TRF Tandem_Repeat 181519 181625 79 + . . scaffold950 WUBlastX LINE_L1 183468 183953 155 - . . scaffold950 WUBlastX LINE_L1-Tx1 183928 184140 37 - . . scaffold950 WUBlastX LINE_L1-Tx1 184027 184194 34 - . . scaffold950 WUBlastX LINE_L1-Tx1 184193 184606 110 - . . scaffold950 WUBlastX LINE_L1-Tx1 184205 184543 200 - . . scaffold950 WUBlastX LINE_CR1 185358 186026 244 - . . scaffold950 TRF Tandem_Repeat 186508 186553 92 + . . scaffold950 GLEAN promoter 187992 188991 0.991222 + . ID=CGI_10022924; scaffold950 GLEAN mRNA 188992 197887 0.991222 + . ID=CGI_10022924; scaffold950 TRF Tandem_Repeat 214782 214881 92 + . . scaffold950 TRF Tandem_Repeat 220963 221075 100 + . . scaffold950 GLEAN mRNA 224684 252187 0.638871 - . ID=CGI_10022925; scaffold950 WUBlastX LINE_L2 235216 235308 39 - . . scaffold950 WUBlastX LINE_L2 235298 235408 43 - . . scaffold950 WUBlastX LINE_L2 235428 235466 29 - . . scaffold950 WUBlastX LINE_L2 235428 235499 22 - . . scaffold950 TRF Tandem_Repeat 236379 236447 79 + . . scaffold950 TRF Tandem_Repeat 243558 243620 126 + . . scaffold950 TRF Tandem_Repeat 243751 243822 144 + . . scaffold950 GLEAN promoter 252188 253187 0.638871 - . ID=CGI_10022925; scaffold950 GLEAN mRNA 252710 304175 0.999027 - . ID=CGI_10022926; scaffold950 GLEAN promoter 304176 305175 0.999027 - . ID=CGI_10022926; scaffold950 GLEAN promoter 311363 312362 1 + . ID=CGI_10022927; scaffold950 GLEAN mRNA 312363 314048 1 + . ID=CGI_10022927; scaffold950 WUBlastX DNA_TcMar-Tc2 314089 314451 96 + . . scaffold950 GLEAN mRNA 320484 362683 0.981503 - . ID=CGI_10022928; scaffold950 WUBlastX DNA_TcMar-Tc1 350395 350673 73 - . . scaffold950 WUBlastX DNA_TcMar-Tc1 350700 351071 23 - . . scaffold950 WUBlastX DNA_TcMar-Tc1 350868 351098 92 - . . scaffold950 TRF Tandem_Repeat 355981 356041 122 + . . scaffold950 TRF Tandem_Repeat 361021 361063 52 + . . scaffold950 GLEAN promoter 362684 363683 0.981503 - . ID=CGI_10022928; scaffold950 WUBlastX LTR_Gypsy 363373 363504 20 + . . scaffold950 WUBlastX LTR_Gypsy 363928 364020 22 + . . scaffold950 WUBlastX LTR_Gypsy 363937 364149 20 + . . scaffold950 WUBlastX LTR_DIRS 364257 366323 766 + . . scaffold950 WUBlastX LTR_DIRS 364305 365990 1061 + . . scaffold950 WUBlastX LTR_DIRS 366227 367153 396 + . . scaffold950 TRF Tandem_Repeat 371490 371535 83 + . . scaffold950 GLEAN promoter 383027 384026 0.588964 + . ID=CGI_10022929; scaffold950 GLEAN mRNA 384027 397632 0.588964 + . ID=CGI_10022929; scaffold950 WUBlastX LINE_L2 390058 391149 141 - . . scaffold950 WUBlastX LINE_L2 390658 391149 189 - . . scaffold950 WUBlastX LINE_L2 390700 391374 126 - . . scaffold950 WUBlastX LINE_L2 390733 391149 196 - . . scaffold950 WUBlastX LINE_L2 390733 391242 150 - . . scaffold950 WUBlastX LINE_L2 391315 391680 84 - . . scaffold950 WUBlastX LTR_DIRS 397123 397221 63 - . . scaffold950 TRF Tandem_Repeat 406090 406134 90 + . . scaffold950 TRF Tandem_Repeat 420988 421021 50 + . . scaffold950 TRF Tandem_Repeat 427904 427948 90 + . . scaffold950 TRF Tandem_Repeat 435222 435250 58 + . . scaffold950 TRF Tandem_Repeat 440873 440903 62 + . . scaffold950 GLEAN mRNA 448753 450410 0.999836 - . ID=CGI_10022930; scaffold950 GLEAN promoter 450411 451410 0.999836 - . ID=CGI_10022930; scaffold950 WUBlastX LTR_Gypsy-Cigr 450981 451547 302 + . . scaffold950 WUBlastX LTR_Gypsy-Cigr 450984 451421 304 + . . scaffold950 WUBlastX LTR_Gypsy 451896 452468 181 + . . scaffold950 WUBlastX LTR_Gypsy 452043 452462 243 + . . scaffold950 WUBlastX LTR_Gypsy 452106 452531 215 + . . scaffold950 WUBlastX LTR_Gypsy 452485 452727 110 + . . scaffold950 WUBlastX LTR_Gypsy 452497 452775 23 + . . scaffold950 WUBlastX LTR_ERV1 453309 453350 21 + . . scaffold950 WUBlastX LTR_Gypsy 453431 453505 20 + . . scaffold950 TRF Tandem_Repeat 470864 471591 973 + . . scaffold950 TRF Tandem_Repeat 476240 476304 114 + . . scaffold950 TRF Tandem_Repeat 500369 500441 139 + . . scaffold950 TRF Tandem_Repeat 534818 534870 97 + . . scaffold950 TRF Tandem_Repeat 545726 545778 106 + . . scaffold950 TRF Tandem_Repeat 548420 548470 102 + . . scaffold950 TRF Tandem_Repeat 548817 548854 76 + . . scaffold950 TRF Tandem_Repeat 551320 551370 86 + . . scaffold950 GLEAN mRNA 552822 556635 1 - . ID=CGI_10022931; scaffold950 GLEAN promoter 556636 557635 1 - . ID=CGI_10022931; scaffold950 TRF Tandem_Repeat 579428 579456 58 + . . scaffold950 TRF Tandem_Repeat 580151 580199 71 + . . scaffold950 TRF Tandem_Repeat 581041 581115 62 + . . scaffold950 TRF Tandem_Repeat 581049 581116 52 + . . scaffold950 TRF Tandem_Repeat 599071 599114 70 + . . scaffold950 TRF Tandem_Repeat 599145 600397 1985 + . . scaffold950 TRF Tandem_Repeat 603539 603636 97 + . . scaffold950 TRF Tandem_Repeat 603866 604017 137 + . . scaffold950 TRF Tandem_Repeat 604094 604186 98 + . . scaffold950 GLEAN promoter 616395 617394 1 + . ID=CGI_10022932; scaffold950 GLEAN mRNA 617395 618594 1 + . ID=CGI_10022932; scaffold950 TRF Tandem_Repeat 629485 629585 166 + . . scaffold950 TRF Tandem_Repeat 629991 630052 124 + . . scaffold950 GLEAN mRNA 644417 652669 0.274509 - . ID=CGI_10022933; scaffold950 GLEAN promoter 652670 653669 0.274509 - . ID=CGI_10022933; scaffold950 TRF Tandem_Repeat 654141 654195 110 + . . scaffold950 TRF Tandem_Repeat 655614 655658 83 + . . scaffold950 TRF Tandem_Repeat 659334 659377 88 + . . scaffold950 GLEAN mRNA 659479 659733 0.991969 - . ID=CGI_10022934; scaffold950 GLEAN promoter 659734 660733 0.991969 - . ID=CGI_10022934; scaffold950 TRF Tandem_Repeat 669303 669397 190 + . . scaffold950 TRF Tandem_Repeat 675754 675823 97 + . . scaffold950 TRF Tandem_Repeat 678414 679665 1723 + . . scaffold950 TRF Tandem_Repeat 685809 685927 211 + . . scaffold950 TRF Tandem_Repeat 693524 693583 120 + . . scaffold950 TRF Tandem_Repeat 694806 694910 94 + . . scaffold950 TRF Tandem_Repeat 696049 696153 112 + . . scaffold950 GLEAN mRNA 704906 725587 0.497867 - . ID=CGI_10022935; scaffold950 TRF Tandem_Repeat 720320 720371 104 + . . scaffold950 GLEAN promoter 725588 726587 0.497867 - . ID=CGI_10022935; scaffold950 TRF Tandem_Repeat 726990 727030 82 + . . scaffold950 TRF Tandem_Repeat 729362 729401 55 + . . scaffold950 TRF Tandem_Repeat 730789 730824 72 + . . scaffold950 TRF Tandem_Repeat 731492 731537 92 + . . scaffold950 TRF Tandem_Repeat 737422 737461 57 + . . scaffold950 TRF Tandem_Repeat 740234 740266 66 + . . scaffold950 WUBlastX LINE_RTE-X 771808 773574 688 - . . scaffold950 WUBlastX LINE_CR1 773368 773631 86 - . . scaffold950 WUBlastX LINE_RTE-X 773628 773876 173 - . . scaffold950 WUBlastX LINE_L1-Tx1 783528 783746 56 - . . scaffold950 WUBlastX LINE_RTE-X 783528 783824 32 - . . scaffold950 GLEAN promoter 791287 792286 0.6496 + . ID=CGI_10022937; scaffold950 GLEAN mRNA 792287 792604 0.6496 + . ID=CGI_10022937; scaffold950 GLEAN mRNA 802940 803839 0.69447 - . ID=CGI_10022938; scaffold950 GLEAN promoter 803840 804839 0.69447 - . ID=CGI_10022938; scaffold951 GLEAN promoter 8470 9469 0.626883 + . ID=CGI_10009145; scaffold951 GLEAN mRNA 9470 11362 0.626883 + . ID=CGI_10009145; scaffold951 TRF Tandem_Repeat 10809 10851 86 + . . scaffold951 TRF Tandem_Repeat 16187 16222 72 + . . scaffold951 GLEAN promoter 19547 20546 0.52928 + . ID=CGI_10009146; scaffold951 TRF Tandem_Repeat 19611 19907 352 + . . scaffold951 GLEAN mRNA 20547 35806 0.52928 + . ID=CGI_10009146; scaffold951 TRF Tandem_Repeat 27693 28333 370 + . . scaffold951 TRF Tandem_Repeat 27963 28138 115 + . . scaffold951 TRF Tandem_Repeat 34774 35240 393 + . . scaffold951 GLEAN promoter 36445 37444 0.98785 + . ID=CGI_10009147; scaffold951 TRF Tandem_Repeat 37214 37260 94 + . . scaffold951 GLEAN mRNA 37445 38968 0.98785 + . ID=CGI_10009147; scaffold951 TRF Tandem_Repeat 43483 43576 165 + . . scaffold951 GLEAN mRNA 43750 106734 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 46139 46182 88 + . . scaffold951 TRF Tandem_Repeat 53845 54040 266 + . . scaffold951 TRF Tandem_Repeat 61731 62128 582 + . . scaffold951 TRF Tandem_Repeat 63472 63522 93 + . . scaffold951 TRF Tandem_Repeat 75044 76741 942 + . . scaffold951 TRF Tandem_Repeat 75086 76690 601 + . . scaffold951 TRF Tandem_Repeat 75679 76674 823 + . . scaffold951 TRF Tandem_Repeat 100816 100871 112 + . . scaffold951 TRF Tandem_Repeat 101586 101660 150 + . . scaffold951 TRF Tandem_Repeat 104859 104903 90 + . . scaffold951 GLEAN promoter 106735 107734 0.799357 - . ID=CGI_10009148; scaffold951 TRF Tandem_Repeat 109272 109306 70 + . . scaffold951 GLEAN mRNA 136983 137706 0.999375 - . ID=CGI_10009149; scaffold951 GLEAN promoter 137707 138706 0.999375 - . ID=CGI_10009149; scaffold951 GLEAN mRNA 139111 140175 1 - . ID=CGI_10009150; scaffold951 TRF Tandem_Repeat 139591 139656 132 + . . scaffold951 GLEAN promoter 140176 141175 1 - . ID=CGI_10009150; scaffold951 GLEAN promoter 141811 142810 1 + . ID=CGI_10009151; scaffold951 GLEAN mRNA 142811 147810 1 + . ID=CGI_10009151; scaffold951 GLEAN promoter 150039 151038 0.754735 + . ID=CGI_10009152; scaffold951 TRF Tandem_Repeat 150465 150575 114 + . . scaffold951 GLEAN mRNA 151039 156030 0.754735 + . ID=CGI_10009152; scaffold951 TRF Tandem_Repeat 152267 152412 82 + . . scaffold951 TRF Tandem_Repeat 152291 152557 179 + . . scaffold951 GLEAN mRNA 160381 165312 0.999607 - . ID=CGI_10009153; scaffold951 GLEAN promoter 165313 166312 0.999607 - . ID=CGI_10009153; scaffold951 WUBlastX LINE_RTE-X 166131 166583 76 + . . scaffold951 GLEAN promoter 166444 167443 1 + . ID=CGI_10009154; scaffold951 WUBlastX LINE_RTE-X 166576 166824 104 + . . scaffold951 GLEAN mRNA 167444 167986 1 + . ID=CGI_10009154; scaffold951 GLEAN promoter 171859 172858 0.97778 + . ID=CGI_10009156; scaffold951 GLEAN mRNA 172859 181821 0.97778 + . ID=CGI_10009156; scaffold951 TRF Tandem_Repeat 174637 175239 954 + . . scaffold951 GLEAN promoter 182078 183077 1 + . ID=CGI_10009157; scaffold951 GLEAN mRNA 183078 184475 1 + . ID=CGI_10009157; scaffold951 TRF Tandem_Repeat 183603 183647 90 + . . scaffold951 TRF Tandem_Repeat 185004 185047 61 + . . scaffold951 TRF Tandem_Repeat 185230 186954 2059 + . . scaffold951 GLEAN promoter 189106 190105 0.593241 + . ID=CGI_10009158; scaffold951 GLEAN mRNA 190106 192231 0.593241 + . ID=CGI_10009158; scaffold951 WUBlastX LINE_RTE-X 198342 198869 290 + . . scaffold951 WUBlastX LINE_RTE-BovB 198399 199133 207 + . . scaffold951 WUBlastX LINE_RTE-X 198426 198884 327 + . . scaffold951 WUBlastX LINE_R2 198432 199337 35 + . . scaffold951 WUBlastX DNA_Zator 202624 202977 60 - . . scaffold951 WUBlastX DNA_Zator 203141 204418 609 - . . scaffold951 GLEAN mRNA 205573 216184 0.471248 - . ID=CGI_10009159; scaffold951 TRF Tandem_Repeat 213738 213763 52 + . . scaffold951 GLEAN promoter 216185 217184 0.471248 - . ID=CGI_10009159; scaffold952 TRF Tandem_Repeat 168 345 219 + . . scaffold952 TRF Tandem_Repeat 237 345 64 + . . scaffold952 GLEAN mRNA 790 3005 0.999664 - . ID=CGI_10002897; scaffold952 GLEAN promoter 3006 4005 0.999664 - . ID=CGI_10002897; scaffold952 TRF Tandem_Repeat 9685 9729 90 + . . scaffold952 WUBlastX LTR_Ngaro 10078 10275 74 - . . scaffold952 WUBlastX LTR_Ngaro 10349 11383 71 - . . scaffold952 WUBlastX LTR_Ngaro 10526 11215 204 - . . scaffold952 WUBlastX LTR_Ngaro 10583 10969 208 - . . scaffold952 GLEAN promoter 11544 12543 0.999676 + . ID=CGI_10002898; scaffold952 GLEAN mRNA 12544 26052 0.999676 + . ID=CGI_10002898; scaffold952 WUBlastX DNA_TcMar-Tc1 17102 17869 273 - . . scaffold952 WUBlastX LINE_L1-Tx1 23165 23206 22 + . . scaffold952 WUBlastX LINE_L1 23196 23495 31 + . . scaffold952 WUBlastX LINE_L1 23292 23495 58 + . . scaffold952 WUBlastX LINE_L1-Tx1 23431 23994 51 + . . scaffold952 WUBlastX LINE_L1-Tx1 23497 23778 61 + . . scaffold952 WUBlastX LINE_L1-Tx1 25021 25602 42 + . . scaffold952 WUBlastX LINE_L1-Tx1 25021 25437 52 + . . scaffold952 WUBlastX LINE_L1-Tx1 25090 25434 55 + . . scaffold952 TRF Tandem_Repeat 31038 31066 58 + . . scaffold952 TRF Tandem_Repeat 44384 44434 95 + . . scaffold952 TRF Tandem_Repeat 52625 52683 50 + . . scaffold952 TRF Tandem_Repeat 52627 52683 59 + . . scaffold952 TRF Tandem_Repeat 52632 52680 61 + . . scaffold954 TRF Tandem_Repeat 162 215 72 + . . scaffold954 GLEAN mRNA 3694 8643 0.975358 - . ID=CGI_10010732; scaffold954 GLEAN promoter 8644 9643 0.975358 - . ID=CGI_10010732; scaffold954 GLEAN promoter 10429 11428 0.624015 + . ID=CGI_10010733; scaffold954 GLEAN mRNA 11429 16226 0.624015 + . ID=CGI_10010733; scaffold954 TRF Tandem_Repeat 15051 15718 910 + . . scaffold954 GLEAN promoter 16711 17710 0.551905 + . ID=CGI_10010734; scaffold954 GLEAN mRNA 17711 18978 0.551905 + . ID=CGI_10010734; scaffold954 GLEAN promoter 18096 19095 0.549226 + . ID=CGI_10010735; scaffold954 GLEAN mRNA 19096 20592 0.549226 + . ID=CGI_10010735; scaffold954 GLEAN promoter 23211 24210 0.989701 + . ID=CGI_10010736; scaffold954 GLEAN mRNA 24211 24999 0.989701 + . ID=CGI_10010736; scaffold954 GLEAN mRNA 26211 26417 0.602899 - . ID=CGI_10010737; scaffold954 GLEAN promoter 26418 27417 0.602899 - . ID=CGI_10010737; scaffold954 TRF Tandem_Repeat 27469 27531 117 + . . scaffold954 GLEAN promoter 31074 32073 0.83496 + . ID=CGI_10010738; scaffold954 GLEAN mRNA 32074 38852 0.83496 + . ID=CGI_10010738; scaffold954 TRF Tandem_Repeat 32187 32369 252 + . . scaffold954 TRF Tandem_Repeat 38913 39263 260 + . . scaffold954 GLEAN mRNA 46602 52825 0.999998 - . ID=CGI_10010739; scaffold954 TRF Tandem_Repeat 50341 50428 151 + . . scaffold954 GLEAN promoter 52826 53825 0.999998 - . ID=CGI_10010739; scaffold954 TRF Tandem_Repeat 65180 65224 90 + . . scaffold954 GLEAN mRNA 67067 71281 1 - . ID=CGI_10010740; scaffold954 TRF Tandem_Repeat 69458 69664 333 + . . scaffold954 GLEAN promoter 71282 72281 1 - . ID=CGI_10010740; scaffold954 GLEAN mRNA 72777 79068 0.999676 - . ID=CGI_10010741; scaffold954 GLEAN promoter 79069 80068 0.999676 - . ID=CGI_10010741; scaffold954 GLEAN mRNA 83865 87843 0.999676 - . ID=CGI_10010742; scaffold954 GLEAN promoter 87844 88843 0.999676 - . ID=CGI_10010742; scaffold954 WUBlastX LINE_L2 93890 94135 44 + . . scaffold954 WUBlastX LINE_CR1 93938 94159 75 + . . scaffold954 WUBlastX LINE_L2 93995 94138 124 + . . scaffold954 WUBlastX LINE_L2 94143 94589 135 + . . scaffold954 WUBlastX LINE_RTE-X 95460 95747 67 - . . scaffold954 WUBlastX LINE_RTE-X 95472 95621 74 - . . scaffold954 WUBlastX LINE_RTE-X 95478 95690 70 - . . scaffold954 TRF Tandem_Repeat 96355 96399 90 + . . scaffold954 GLEAN promoter 96854 97853 0.648527 + . ID=CGI_10010743; scaffold954 GLEAN mRNA 97854 104779 0.648527 + . ID=CGI_10010743; scaffold954 TRF Tandem_Repeat 99017 99064 96 + . . scaffold954 TRF Tandem_Repeat 108494 108535 84 + . . scaffold954 WUBlastX LINE_RTE-X 110392 110673 59 + . . scaffold954 TRF Tandem_Repeat 125468 125541 148 + . . scaffold954 TRF Tandem_Repeat 127058 127112 110 + . . scaffold954 TRF Tandem_Repeat 131540 131593 108 + . . scaffold954 TRF Tandem_Repeat 137689 137715 54 + . . scaffold954 TRF Tandem_Repeat 155435 155514 160 + . . scaffold954 WUBlastX DNA_Harbinger 160543 160788 33 + . . scaffold954 WUBlastX DNA_Harbinger 160564 160740 77 + . . scaffold954 TRF Tandem_Repeat 161011 161146 263 + . . scaffold954 TRF Tandem_Repeat 162786 162838 52 + . . scaffold954 WUBlastX LINE_RTE-BovB 164519 164686 96 - . . scaffold954 WUBlastX LINE_RTE-BovB 164689 164826 56 - . . scaffold954 WUBlastX LINE_RTE-BovB 164713 164991 82 - . . scaffold954 WUBlastX LINE_RTE-BovB 164803 164970 122 - . . scaffold954 TRF Tandem_Repeat 166794 166842 98 + . . scaffold954 TRF Tandem_Repeat 167169 167207 78 + . . scaffold954 WUBlastX DNA_TcMar-Fot1 168120 168797 127 + . . scaffold954 WUBlastX DNA_TcMar-Fot1 168802 168957 62 + . . scaffold954 WUBlastX DNA_TcMar-Fot1 168851 169366 110 + . . scaffold954 WUBlastX DNA_TcMar-Fot1 168911 169270 176 + . . scaffold954 WUBlastX DNA_TcMar-Fot1 169367 169417 20 + . . scaffold954 WUBlastX LTR_Gypsy 171561 171722 52 - . . scaffold954 WUBlastX LTR_Gypsy 171665 171928 79 - . . scaffold954 WUBlastX LTR_Gypsy 171797 171931 80 - . . scaffold954 WUBlastX LTR_Gypsy 171839 171967 36 - . . scaffold954 WUBlastX LTR_Gypsy 172547 172660 20 - . . scaffold954 WUBlastX LTR_Gypsy-Cigr 173111 173431 163 - . . scaffold954 WUBlastX LTR_Gypsy 173150 173659 66 - . . scaffold954 WUBlastX LTR_Gypsy 173183 173551 89 - . . scaffold954 WUBlastX LTR_Gypsy 173183 173476 117 - . . scaffold954 WUBlastX LINE_RTE-BovB 176708 177016 76 - . . scaffold954 WUBlastX DNA_Academ 183841 184122 27 - . . scaffold954 GLEAN mRNA 183919 184182 0.57353 - . ID=CGI_10010744; scaffold954 WUBlastX DNA_Academ 183943 184917 397 - . . scaffold954 GLEAN promoter 184183 185182 0.57353 - . ID=CGI_10010744; scaffold954 WUBlastX DNA_P 185104 185424 92 + . . scaffold954 WUBlastX DNA_Academ 185588 186214 143 - . . scaffold954 WUBlastX DNA_Academ 185726 186508 156 - . . scaffold954 WUBlastX DNA_Kolobok-IS4 209348 210061 340 + . . scaffold954 WUBlastX DNA_IS4EU 213295 213480 77 - . . scaffold954 WUBlastX LINE_RTE-X 220114 220533 65 - . . scaffold954 WUBlastX LINE_RTE-X 220213 220545 182 - . . scaffold954 WUBlastX LINE_RTE-X 220234 220626 128 - . . scaffold954 GLEAN mRNA 220872 230195 0.904789 - . ID=CGI_10010745; scaffold954 WUBlastX LINE_I 221010 221177 28 - . . scaffold954 WUBlastX LINE_RTE-X 221072 221437 38 - . . scaffold954 WUBlastX LINE_RTE-X 221374 221484 20 - . . scaffold954 TRF Tandem_Repeat 226174 226278 66 + . . scaffold954 TRF Tandem_Repeat 226194 226297 100 + . . scaffold954 GLEAN promoter 230196 231195 0.904789 - . ID=CGI_10010745; scaffold954 WUBlastX LTR_Ngaro 270149 270790 105 + . . scaffold954 WUBlastX LTR_Ngaro 270206 270637 180 + . . scaffold954 WUBlastX LTR_Ngaro 270785 271150 87 + . . scaffold954 WUBlastX LTR_Ngaro 270860 271153 200 + . . scaffold954 WUBlastX LTR_Ngaro 271126 271881 519 + . . scaffold954 WUBlastX LTR_Ngaro 271880 272278 185 + . . scaffold954 WUBlastX LTR_Ngaro 272363 273193 159 + . . scaffold954 WUBlastX LTR_Ngaro 273080 273220 23 + . . scaffold955 GLEAN mRNA 178 2634 1 - . ID=CGI_10009843; scaffold955 GLEAN promoter 2384 3383 1 + . ID=CGI_10009844; scaffold955 GLEAN promoter 2635 3634 1 - . ID=CGI_10009843; scaffold955 GLEAN mRNA 3384 12491 1 + . ID=CGI_10009844; scaffold955 GLEAN promoter 14285 15284 0.999676 + . ID=CGI_10009845; scaffold955 GLEAN mRNA 15285 36065 0.999676 + . ID=CGI_10009845; scaffold955 TRF Tandem_Repeat 16096 16137 84 + . . scaffold955 GLEAN mRNA 25456 31211 0.648433 - . ID=CGI_10009846; scaffold955 GLEAN promoter 31212 32211 0.648433 - . ID=CGI_10009846; scaffold955 GLEAN promoter 38509 39508 0.999027 + . ID=CGI_10009847; scaffold955 GLEAN mRNA 39509 55784 0.999027 + . ID=CGI_10009847; scaffold955 GLEAN mRNA 57121 62448 0.990656 - . ID=CGI_10009848; scaffold955 GLEAN promoter 59106 60105 0.999351 + . ID=CGI_10009849; scaffold955 TRF Tandem_Repeat 59757 59798 52 + . . scaffold955 GLEAN mRNA 60106 75837 0.999351 + . ID=CGI_10009849; scaffold955 GLEAN promoter 62449 63448 0.990656 - . ID=CGI_10009848; scaffold955 GLEAN mRNA 76582 77691 1 - . ID=CGI_10009850; scaffold955 GLEAN promoter 77692 78691 1 - . ID=CGI_10009850; scaffold955 GLEAN mRNA 78709 81412 1 - . ID=CGI_10009851; scaffold955 GLEAN promoter 81413 82412 1 - . ID=CGI_10009851; scaffold955 GLEAN promoter 83409 84408 0.741203 + . ID=CGI_10009852; scaffold955 GLEAN mRNA 84409 89236 0.741203 + . ID=CGI_10009852; scaffold955 TRF Tandem_Repeat 85612 85666 110 + . . scaffold955 TRF Tandem_Repeat 85794 85837 88 + . . scaffold955 TRF Tandem_Repeat 87777 88378 945 + . . scaffold955 TRF Tandem_Repeat 95241 95273 59 + . . scaffold955 TRF Tandem_Repeat 97896 97952 114 + . . scaffold955 TRF Tandem_Repeat 99433 100060 882 + . . scaffold955 GLEAN promoter 101883 102882 0.99714 + . ID=CGI_10009853; scaffold955 TRF Tandem_Repeat 102198 102240 86 + . . scaffold955 TRF Tandem_Repeat 102788 102819 64 + . . scaffold955 GLEAN mRNA 102883 129964 0.99714 + . ID=CGI_10009853; scaffold955 WUBlastX DNA_Maverick 107387 107698 37 + . . scaffold955 TRF Tandem_Repeat 109410 109661 233 + . . scaffold955 TRF Tandem_Repeat 109410 109683 230 + . . scaffold955 TRF Tandem_Repeat 110328 110609 361 + . . scaffold955 TRF Tandem_Repeat 110342 110545 196 + . . scaffold955 TRF Tandem_Repeat 110401 110610 226 + . . scaffold955 TRF Tandem_Repeat 111562 111602 82 + . . scaffold955 TRF Tandem_Repeat 112534 112583 100 + . . scaffold955 WUBlastX LINE_RTE-BovB 118510 118665 28 - . . scaffold955 WUBlastX LINE_RTE-BovB 118543 118683 45 - . . scaffold955 WUBlastX LINE_RTE-BovB 119033 119596 47 - . . scaffold955 WUBlastX LINE_RTE-BovB 119290 119475 48 - . . scaffold955 WUBlastX LINE_RTE-BovB 119552 119665 37 - . . scaffold955 WUBlastX LINE_RTE-BovB 119682 119981 29 - . . scaffold955 WUBlastX LINE_RTE-BovB 119975 120220 30 - . . scaffold955 WUBlastX LINE_RTE-BovB 120020 120190 89 - . . scaffold955 WUBlastX LINE_RTE-BovB 120026 120406 68 - . . scaffold955 WUBlastX LINE_RTE-BovB 120029 120307 81 - . . scaffold955 TRF Tandem_Repeat 121695 121865 87 + . . scaffold955 TRF Tandem_Repeat 121865 121960 77 + . . scaffold955 TRF Tandem_Repeat 121900 121990 65 + . . scaffold955 TRF Tandem_Repeat 130084 130114 62 + . . scaffold955 GLEAN promoter 131212 132211 0.863777 + . ID=CGI_10009854; scaffold955 GLEAN mRNA 132212 150784 0.863777 + . ID=CGI_10009854; scaffold955 TRF Tandem_Repeat 141136 141187 97 + . . scaffold955 GLEAN mRNA 151515 165131 0.943285 - . ID=CGI_10009855; scaffold955 TRF Tandem_Repeat 163661 163685 50 + . . scaffold955 GLEAN promoter 165132 166131 0.943285 - . ID=CGI_10009855; scaffold955 GLEAN promoter 172011 173010 0.628156 + . ID=CGI_10009856; scaffold955 GLEAN mRNA 173011 181927 0.628156 + . ID=CGI_10009856; scaffold955 TRF Tandem_Repeat 173789 173836 96 + . . scaffold955 TRF Tandem_Repeat 184137 184177 82 + . . scaffold955 GLEAN promoter 185096 186095 0.45779 + . ID=CGI_10009857; scaffold955 GLEAN mRNA 186096 195305 0.45779 + . ID=CGI_10009857; scaffold955 WUBlastX DNA_Kolobok-Hyd 193665 194081 36 + . . scaffold955 GLEAN promoter 195273 196272 0.98915 + . ID=CGI_10009859; scaffold955 GLEAN mRNA 195330 195707 0.9923 - . ID=CGI_10009858; scaffold955 GLEAN promoter 195708 196707 0.9923 - . ID=CGI_10009858; scaffold955 GLEAN mRNA 196273 211811 0.98915 + . ID=CGI_10009859; scaffold955 TRF Tandem_Repeat 209124 209160 74 + . . scaffold955 TRF Tandem_Repeat 226004 226269 256 + . . scaffold955 TRF Tandem_Repeat 233725 233822 81 + . . scaffold955 TRF Tandem_Repeat 234879 235026 206 + . . scaffold955 TRF Tandem_Repeat 235752 236108 644 + . . scaffold955 TRF Tandem_Repeat 236407 236558 198 + . . scaffold955 GLEAN mRNA 237023 241702 0.927969 - . ID=CGI_10009860; scaffold955 TRF Tandem_Repeat 237622 237661 80 + . . scaffold955 TRF Tandem_Repeat 238772 238958 213 + . . scaffold955 GLEAN promoter 241703 242702 0.927969 - . ID=CGI_10009860; scaffold955 GLEAN promoter 242008 243007 1 + . ID=CGI_10009861; scaffold955 GLEAN mRNA 243008 244733 1 + . ID=CGI_10009861; scaffold955 TRF Tandem_Repeat 243904 244103 167 + . . scaffold958 WUBlastX LTR_Ngaro 227 295 23 - . . scaffold958 WUBlastX LTR_Ngaro 310 702 113 - . . scaffold959 WUBlastX LTR_DIRS 469 1488 153 + . . scaffold959 WUBlastX LTR_DIRS 637 1419 238 + . . scaffold959 WUBlastX LTR_DIRS 1428 3557 1209 + . . scaffold959 WUBlastX LTR_DIRS 3335 4351 634 + . . scaffold959 GLEAN promoter 5260 6259 1 + . ID=CGI_10000673; scaffold959 GLEAN mRNA 6260 7849 1 + . ID=CGI_10000673; scaffold96 TRF Tandem_Repeat 1 295 383 + . . scaffold96 TRF Tandem_Repeat 2504 2602 182 + . . scaffold96 TRF Tandem_Repeat 3352 3447 75 + . . scaffold96 WUBlastX LINE_CR1 3860 4060 52 + . . scaffold96 GLEAN promoter 8755 9754 0.999984 + . ID=CGI_10000882; scaffold96 GLEAN mRNA 9755 10240 0.999984 + . ID=CGI_10000882; scaffold960 GLEAN mRNA 778 4704 0.999624 - . ID=CGI_10013404; scaffold960 GLEAN promoter 4705 5704 0.999624 - . ID=CGI_10013404; scaffold960 TRF Tandem_Repeat 7440 7479 80 + . . scaffold960 TRF Tandem_Repeat 14287 14324 76 + . . scaffold960 TRF Tandem_Repeat 14659 14701 86 + . . scaffold960 WUBlastX LINE_CR1 49573 49680 33 + . . scaffold960 WUBlastX LINE_CR1-L2 49623 49940 80 + . . scaffold960 WUBlastX LINE_L2 49692 49991 88 + . . scaffold960 WUBlastX LINE_CR1-L2 49692 49940 133 + . . scaffold960 WUBlastX LINE_CR1 49710 50153 58 + . . scaffold960 WUBlastX LINE_L2 50141 50305 25 + . . scaffold960 WUBlastX LINE_CR1-L2 50210 50308 28 + . . scaffold960 GLEAN promoter 54660 55659 0.999998 + . ID=CGI_10013405; scaffold960 GLEAN mRNA 55660 60265 0.999998 + . ID=CGI_10013405; scaffold960 GLEAN mRNA 64101 68551 0.59993 - . ID=CGI_10013406; scaffold960 TRF Tandem_Repeat 64717 64769 61 + . . scaffold960 GLEAN promoter 68552 69551 0.59993 - . ID=CGI_10013406; scaffold960 GLEAN mRNA 73398 73799 0.842471 - . ID=CGI_10013407; scaffold960 GLEAN promoter 73800 74799 0.842471 - . ID=CGI_10013407; scaffold960 GLEAN promoter 75560 76559 0.99975 + . ID=CGI_10013408; scaffold960 GLEAN mRNA 76560 77024 0.99975 + . ID=CGI_10013408; scaffold960 TRF Tandem_Repeat 76629 76689 86 + . . scaffold960 TRF Tandem_Repeat 98719 99028 213 + . . scaffold960 TRF Tandem_Repeat 100344 101304 1230 + . . scaffold960 TRF Tandem_Repeat 117046 117128 166 + . . scaffold960 TRF Tandem_Repeat 119667 119706 80 + . . scaffold960 TRF Tandem_Repeat 128211 128252 75 + . . scaffold960 GLEAN promoter 128248 129247 0.999993 + . ID=CGI_10013409; scaffold960 GLEAN mRNA 129248 129598 0.999993 + . ID=CGI_10013409; scaffold960 GLEAN promoter 141943 142942 0.965913 + . ID=CGI_10013410; scaffold960 GLEAN mRNA 142943 143857 0.965913 + . ID=CGI_10013410; scaffold960 TRF Tandem_Repeat 144666 144703 76 + . . scaffold960 TRF Tandem_Repeat 145357 145403 94 + . . scaffold960 GLEAN mRNA 158990 160195 0.999999 - . ID=CGI_10013411; scaffold960 GLEAN promoter 160196 161195 0.999999 - . ID=CGI_10013411; scaffold960 TRF Tandem_Repeat 165593 165644 50 + . . scaffold960 TRF Tandem_Repeat 165601 165657 60 + . . scaffold960 TRF Tandem_Repeat 179081 179133 106 + . . scaffold960 TRF Tandem_Repeat 183709 184832 1656 + . . scaffold960 TRF Tandem_Repeat 184863 184926 83 + . . scaffold960 TRF Tandem_Repeat 198983 199019 74 + . . scaffold960 TRF Tandem_Repeat 201988 202029 84 + . . scaffold960 TRF Tandem_Repeat 202280 202346 89 + . . scaffold960 TRF Tandem_Repeat 204421 204472 104 + . . scaffold960 TRF Tandem_Repeat 206474 207300 1129 + . . scaffold960 TRF Tandem_Repeat 206475 207300 1100 + . . scaffold960 GLEAN promoter 213096 214095 0.999997 + . ID=CGI_10013412; scaffold960 GLEAN mRNA 214096 222105 0.999997 + . ID=CGI_10013412; scaffold960 TRF Tandem_Repeat 218131 219197 1604 + . . scaffold960 TRF Tandem_Repeat 218131 219197 1532 + . . scaffold960 TRF Tandem_Repeat 231405 231445 82 + . . scaffold960 TRF Tandem_Repeat 232442 232810 500 + . . scaffold960 TRF Tandem_Repeat 234348 234782 532 + . . scaffold960 TRF Tandem_Repeat 250417 251649 1378 + . . scaffold960 TRF Tandem_Repeat 267901 267988 176 + . . scaffold960 TRF Tandem_Repeat 270648 270685 76 + . . scaffold960 TRF Tandem_Repeat 272027 272051 50 + . . scaffold960 TRF Tandem_Repeat 272108 272134 54 + . . scaffold960 TRF Tandem_Repeat 287925 288005 153 + . . scaffold960 TRF Tandem_Repeat 295675 295733 118 + . . scaffold960 TRF Tandem_Repeat 298080 298127 96 + . . scaffold960 TRF Tandem_Repeat 308280 308334 110 + . . scaffold960 GLEAN promoter 308342 309341 0.499919 + . ID=CGI_10013413; scaffold960 GLEAN mRNA 309342 313307 0.499919 + . ID=CGI_10013413; scaffold960 TRF Tandem_Repeat 311765 311905 257 + . . scaffold960 GLEAN promoter 312528 313527 0.734124 + . ID=CGI_10013414; scaffold960 GLEAN mRNA 313528 314487 0.734124 + . ID=CGI_10013414; scaffold960 TRF Tandem_Repeat 322224 322257 68 + . . scaffold960 WUBlastX LINE_CR1 324065 324211 41 - . . scaffold960 WUBlastX LINE_CR1 324065 324244 35 - . . scaffold960 WUBlastX LINE_CR1 324329 324391 24 - . . scaffold960 WUBlastX LINE_CR1 324795 325127 79 - . . scaffold960 WUBlastX LINE_CR1 324852 325136 203 - . . scaffold960 WUBlastX LINE_CR1 324993 325712 447 - . . scaffold960 WUBlastX LINE_Rex-Babar 325119 325826 281 - . . scaffold960 WUBlastX LINE_CR1 325128 325655 480 - . . scaffold960 WUBlastX LINE_CR1 325630 325878 125 - . . scaffold960 WUBlastX LINE_CR1 325630 325944 94 - . . scaffold960 WUBlastX LINE_CR1 329789 330118 88 - . . scaffold960 WUBlastX LINE_CR1 329831 330097 90 - . . scaffold960 WUBlastX LINE_L1 332513 333304 127 + . . scaffold960 WUBlastX LINE_CR1-L2 332639 333364 255 + . . scaffold960 WUBlastX LINE_L1 332846 333469 80 + . . scaffold960 TRF Tandem_Repeat 335211 335261 81 + . . scaffold960 TRF Tandem_Repeat 335429 335461 66 + . . scaffold960 WUBlastX DNA_IS 336191 336403 314 - . . scaffold960 WUBlastX DNA_IS 336381 337475 1756 - . . scaffold960 GLEAN promoter 340703 341702 0.592622 + . ID=CGI_10013415; scaffold960 GLEAN mRNA 341703 354543 0.592622 + . ID=CGI_10013415; scaffold960 TRF Tandem_Repeat 348617 348687 88 + . . scaffold960 TRF Tandem_Repeat 348617 348667 75 + . . scaffold960 TRF Tandem_Repeat 348621 348692 81 + . . scaffold960 TRF Tandem_Repeat 348645 348692 78 + . . scaffold960 TRF Tandem_Repeat 349187 349246 75 + . . scaffold960 TRF Tandem_Repeat 349187 349246 93 + . . scaffold960 TRF Tandem_Repeat 350934 350983 82 + . . scaffold962 GLEAN promoter 1 310 1 + . ID=CGI_10027629; scaffold962 GLEAN mRNA 311 2323 1 + . ID=CGI_10027629; scaffold962 GLEAN promoter 4531 5530 0.999068 + . ID=CGI_10027630; scaffold962 GLEAN mRNA 5531 7540 0.999068 + . ID=CGI_10027630; scaffold962 WUBlastX LTR_Gypsy 12482 12856 41 + . . scaffold962 WUBlastX LTR_Gypsy 12509 12823 49 + . . scaffold962 WUBlastX LTR_Gypsy 13041 13160 21 + . . scaffold962 WUBlastX LTR_Gypsy 13608 13874 78 + . . scaffold962 WUBlastX LTR_Gypsy 13665 13874 120 + . . scaffold962 WUBlastX LTR_Gypsy 13871 14800 185 + . . scaffold962 WUBlastX LTR_Gypsy 13910 14698 399 + . . scaffold962 WUBlastX LTR_Gypsy 14647 14832 71 + . . scaffold962 TRF Tandem_Repeat 14838 14879 68 + . . scaffold962 TRF Tandem_Repeat 15052 16130 1766 + . . scaffold962 GLEAN promoter 16446 17445 0.999586 + . ID=CGI_10027631; scaffold962 WUBlastX LTR_Gypsy 17440 17592 75 + . . scaffold962 GLEAN mRNA 17446 17832 0.999586 + . ID=CGI_10027631; scaffold962 WUBlastX LTR_ERVL 17614 17850 59 + . . scaffold962 WUBlastX LTR_Gypsy 17859 18077 34 + . . scaffold962 WUBlastX LTR_Gypsy-Cigr 17865 18047 87 + . . scaffold962 TRF Tandem_Repeat 24919 24962 88 + . . scaffold962 WUBlastX DNA_Harbinger 27075 27311 60 - . . scaffold962 WUBlastX LTR_Pao 28219 28497 43 - . . scaffold962 WUBlastX LTR_Pao 28267 28527 190 - . . scaffold962 WUBlastX LTR_Pao 28499 33406 3681 - . . scaffold962 WUBlastX LTR_Pao 31628 33928 1002 - . . scaffold962 WUBlastX LTR_Pao 33446 34051 49 - . . scaffold962 WUBlastX LTR_Pao 34063 34269 25 - . . scaffold962 WUBlastX LTR_Pao 34120 34269 28 - . . scaffold962 WUBlastX LINE_Penelope 37281 37523 124 + . . scaffold962 WUBlastX LINE_Penelope 37281 37997 118 + . . scaffold962 WUBlastX LINE_Penelope 39493 39729 62 + . . scaffold962 WUBlastX LINE_Penelope 39732 39947 54 + . . scaffold962 WUBlastX LINE_Penelope 39735 39986 24 + . . scaffold962 TRF Tandem_Repeat 51516 51564 98 + . . scaffold962 WUBlastX LINE_Penelope 51952 52143 32 - . . scaffold962 WUBlastX LINE_L1-Tx1 53438 53536 22 - . . scaffold962 WUBlastX LINE_L1-Tx1 53979 54101 26 - . . scaffold962 WUBlastX LTR_Pao 55426 55497 59 - . . scaffold962 WUBlastX LTR_Pao 55455 55751 71 - . . scaffold962 WUBlastX LTR_Pao 55500 55814 201 - . . scaffold962 WUBlastX LTR_Pao 55819 56751 573 - . . scaffold962 WUBlastX LTR_Pao 55819 57846 386 - . . scaffold962 WUBlastX LTR_Pao 57040 57789 602 - . . scaffold962 WUBlastX LTR_Pao 57771 58037 97 - . . scaffold962 WUBlastX LTR_Pao 57789 58088 51 - . . scaffold962 TRF Tandem_Repeat 58683 58725 86 + . . scaffold962 TRF Tandem_Repeat 60099 60131 66 + . . scaffold962 WUBlastX LTR_Pao 60175 60696 89 - . . scaffold962 WUBlastX LTR_Pao 60277 61425 748 - . . scaffold962 WUBlastX LTR_Pao 60277 61632 720 - . . scaffold962 WUBlastX LTR_Pao 68247 68348 24 - . . scaffold962 WUBlastX LTR_Pao 68320 69168 365 - . . scaffold962 WUBlastX LTR_Pao 68485 69324 340 - . . scaffold962 WUBlastX LTR_Pao 69369 69644 21 - . . scaffold962 WUBlastX LTR_Pao 69570 69659 22 - . . scaffold962 TRF Tandem_Repeat 69674 69787 95 + . . scaffold962 WUBlastX LTR_Pao 70569 71024 135 - . . scaffold962 WUBlastX LTR_Pao 71030 71158 65 - . . scaffold962 WUBlastX LTR_Pao 71466 71630 33 - . . scaffold962 TRF Tandem_Repeat 72970 73002 66 + . . scaffold962 TRF Tandem_Repeat 73190 73321 158 + . . scaffold962 TRF Tandem_Repeat 74223 74309 95 + . . scaffold962 TRF Tandem_Repeat 74255 74309 56 + . . scaffold962 TRF Tandem_Repeat 91507 91558 104 + . . scaffold962 WUBlastX DNA_MuDR 95309 95929 195 + . . scaffold962 WUBlastX DNA_MuDR 95858 96079 21 + . . scaffold962 WUBlastX LTR_Gypsy-Cigr 96467 96649 95 - . . scaffold962 WUBlastX LTR_Gypsy 96497 96757 77 - . . scaffold962 WUBlastX LTR_Gypsy-Cigr 96787 97053 42 - . . scaffold962 WUBlastX LTR_Gypsy 97059 97337 45 - . . scaffold962 WUBlastX DNA_MuDR 99475 100746 51 + . . scaffold962 WUBlastX DNA_MuDR 99956 100270 69 + . . scaffold962 WUBlastX DNA_MuDR 100096 100689 95 + . . scaffold962 WUBlastX DNA_MuDR 100495 100749 63 + . . scaffold962 WUBlastX LTR_Gypsy 101646 101927 73 - . . scaffold962 WUBlastX LTR_Gypsy 101727 101936 84 - . . scaffold962 WUBlastX LTR_Gypsy-Cigr 101772 101927 101 - . . scaffold962 WUBlastX LTR_Gypsy-Cigr 101792 102343 22 - . . scaffold962 WUBlastX LTR_Gypsy 102065 102379 24 - . . scaffold962 WUBlastX LTR_Gypsy 102364 102651 48 - . . scaffold962 WUBlastX LTR_Gypsy-Cigr 102678 103034 79 - . . scaffold962 WUBlastX LTR_Gypsy 104121 105017 37 + . . scaffold962 WUBlastX LTR_Gypsy-Cigr 104250 104708 140 + . . scaffold962 WUBlastX LTR_Gypsy 105071 105490 21 + . . scaffold962 WUBlastX LTR_Gypsy 105092 105175 39 + . . scaffold962 WUBlastX LTR_Lenti 105110 105214 28 + . . scaffold962 WUBlastX LTR_Gypsy 105490 106308 402 + . . scaffold962 WUBlastX LTR_Gypsy-Cigr 106295 107275 783 + . . scaffold962 WUBlastX LTR_Gypsy 107427 107651 49 + . . scaffold962 WUBlastX LTR_Gypsy 107581 107832 54 + . . scaffold962 WUBlastX LTR_Gypsy 107630 108337 143 + . . scaffold962 WUBlastX LTR_Gypsy 107801 108724 608 + . . scaffold962 WUBlastX LTR_Foamy 108671 108778 24 + . . scaffold962 TRF Tandem_Repeat 110481 111188 804 + . . scaffold962 GLEAN mRNA 111909 112217 0.481188 - . ID=CGI_10027633; scaffold962 GLEAN promoter 112218 113217 0.481188 - . ID=CGI_10027633; scaffold962 TRF Tandem_Repeat 116144 116173 60 + . . scaffold962 WUBlastX DNA_Kolobok-IS4 122622 122837 44 + . . scaffold962 WUBlastX DNA_IS4EU 122640 123008 41 + . . scaffold962 GLEAN promoter 127818 128817 0.999978 + . ID=CGI_10027634; scaffold962 GLEAN mRNA 128818 130610 0.999978 + . ID=CGI_10027634; scaffold962 WUBlastX LTR_Gypsy 136400 140419 2193 - . . scaffold962 WUBlastX LTR_Gypsy 140500 141372 196 - . . scaffold962 WUBlastX LTR_Gypsy 140509 141531 173 - . . scaffold962 GLEAN mRNA 142923 158061 0.9993 - . ID=CGI_10027635; scaffold962 TRF Tandem_Repeat 156445 156512 118 + . . scaffold962 TRF Tandem_Repeat 157174 157207 50 + . . scaffold962 GLEAN promoter 158062 159061 0.9993 - . ID=CGI_10027635; scaffold962 GLEAN mRNA 162491 169615 0.936227 - . ID=CGI_10027636; scaffold962 GLEAN promoter 169616 170615 0.936227 - . ID=CGI_10027636; scaffold962 TRF Tandem_Repeat 183924 183975 77 + . . scaffold962 WUBlastX DNA_IS4EU 186954 188102 160 + . . scaffold962 WUBlastX DNA_IS4EU 187674 188108 283 + . . scaffold962 WUBlastX DNA_IS4EU 188589 188720 40 - . . scaffold962 WUBlastX DNA_IS4EU 188723 189067 31 - . . scaffold962 WUBlastX DNA_IS4EU 189112 189426 48 - . . scaffold962 WUBlastX DNA_Kolobok-IS4 189826 190248 35 - . . scaffold962 WUBlastX DNA_IS4EU 189826 190176 54 - . . scaffold962 GLEAN mRNA 191636 192513 0.999749 - . ID=CGI_10027637; scaffold962 GLEAN promoter 192514 193513 0.999749 - . ID=CGI_10027637; scaffold962 TRF Tandem_Repeat 193390 193481 112 + . . scaffold962 TRF Tandem_Repeat 194467 194502 72 + . . scaffold962 GLEAN mRNA 207620 214993 0.982957 - . ID=CGI_10027638; scaffold962 GLEAN promoter 214994 215993 0.982957 - . ID=CGI_10027638; scaffold962 TRF Tandem_Repeat 217426 217473 96 + . . scaffold962 GLEAN mRNA 220874 228062 0.911294 - . ID=CGI_10027639; scaffold962 TRF Tandem_Repeat 227716 227771 112 + . . scaffold962 GLEAN promoter 228063 229062 0.911294 - . ID=CGI_10027639; scaffold962 TRF Tandem_Repeat 234614 237459 2742 + . . scaffold962 TRF Tandem_Repeat 240132 241985 1545 + . . scaffold962 TRF Tandem_Repeat 240230 241995 1869 + . . scaffold962 TRF Tandem_Repeat 247403 247450 96 + . . scaffold962 TRF Tandem_Repeat 250396 250438 86 + . . scaffold962 TRF Tandem_Repeat 250604 250651 62 + . . scaffold962 TRF Tandem_Repeat 250685 250835 128 + . . scaffold962 TRF Tandem_Repeat 250725 250881 117 + . . scaffold962 WUBlastX DNA_Crypton 254873 255364 97 + . . scaffold962 WUBlastX DNA_Crypton 255026 255364 125 + . . scaffold962 WUBlastX DNA_Crypton 255387 255575 70 + . . scaffold962 TRF Tandem_Repeat 256428 256483 112 + . . scaffold962 GLEAN mRNA 259987 278141 0.577945 - . ID=CGI_10027640; scaffold962 TRF Tandem_Repeat 262992 263362 478 + . . scaffold962 TRF Tandem_Repeat 262992 263419 359 + . . scaffold962 TRF Tandem_Repeat 262992 263362 478 + . . scaffold962 TRF Tandem_Repeat 271952 272043 157 + . . scaffold962 GLEAN promoter 278142 279141 0.577945 - . ID=CGI_10027640; scaffold962 TRF Tandem_Repeat 278394 278473 151 + . . scaffold962 TRF Tandem_Repeat 282820 282855 72 + . . scaffold962 GLEAN promoter 286980 287979 0.64491 + . ID=CGI_10027641; scaffold962 GLEAN mRNA 287980 294424 0.64491 + . ID=CGI_10027641; scaffold962 TRF Tandem_Repeat 293743 293792 91 + . . scaffold962 TRF Tandem_Repeat 294598 294628 62 + . . scaffold962 TRF Tandem_Repeat 294696 294722 54 + . . scaffold962 TRF Tandem_Repeat 294760 294801 84 + . . scaffold962 TRF Tandem_Repeat 319725 319759 70 + . . scaffold962 GLEAN mRNA 322708 337106 0.557414 - . ID=CGI_10027642; scaffold962 TRF Tandem_Repeat 328665 330349 2138 + . . scaffold962 TRF Tandem_Repeat 335509 335684 145 + . . scaffold962 GLEAN promoter 337107 338106 0.557414 - . ID=CGI_10027642; scaffold962 TRF Tandem_Repeat 342178 342227 75 + . . scaffold962 TRF Tandem_Repeat 342597 342628 64 + . . scaffold962 TRF Tandem_Repeat 344082 344131 91 + . . scaffold962 GLEAN mRNA 349660 355150 0.909734 - . ID=CGI_10027643; scaffold962 WUBlastX LTR_Pao 350341 350520 31 - . . scaffold962 WUBlastX LTR_Pao 350641 350871 37 - . . scaffold962 GLEAN promoter 355151 356150 0.909734 - . ID=CGI_10027643; scaffold962 WUBlastX DNA_Maverick 358508 358693 69 + . . scaffold962 WUBlastX DNA_Maverick 358514 358669 88 + . . scaffold962 WUBlastX DNA_Maverick 358725 359000 49 + . . scaffold962 WUBlastX DNA_Maverick 359002 359070 22 + . . scaffold962 GLEAN mRNA 363407 372886 0.374498 - . ID=CGI_10027644; scaffold962 WUBlastX DNA_NOF 366438 366740 45 - . . scaffold962 TRF Tandem_Repeat 371411 371472 124 + . . scaffold962 TRF Tandem_Repeat 372563 372608 92 + . . scaffold962 GLEAN promoter 372887 373886 0.374498 - . ID=CGI_10027644; scaffold962 WUBlastX DNA_Maverick 374818 375492 106 + . . scaffold962 WUBlastX DNA_Maverick 375157 375492 144 + . . scaffold962 WUBlastX DNA_Maverick 376036 376227 80 + . . scaffold962 WUBlastX DNA_Maverick 376283 376582 119 + . . scaffold962 WUBlastX DNA_Maverick 384317 385042 95 + . . scaffold962 WUBlastX DNA_Maverick 384707 385042 134 + . . scaffold962 WUBlastX DNA_Maverick 385590 385802 68 + . . scaffold962 WUBlastX DNA_Maverick 385605 385778 82 + . . scaffold962 WUBlastX DNA_Maverick 385834 386133 119 + . . scaffold962 GLEAN mRNA 387756 388286 0.492706 - . ID=CGI_10027645; scaffold962 WUBlastX LINE_L1 388140 388853 59 - . . scaffold962 GLEAN promoter 388287 389286 0.492706 - . ID=CGI_10027645; scaffold962 GLEAN mRNA 388389 388649 0.981828 - . ID=CGI_10027646; scaffold962 GLEAN promoter 388650 389649 0.981828 - . ID=CGI_10027646; scaffold962 GLEAN mRNA 390041 393185 0.910406 - . ID=CGI_10027647; scaffold962 GLEAN promoter 393186 394185 0.910406 - . ID=CGI_10027647; scaffold962 TRF Tandem_Repeat 394556 394647 66 + . . scaffold962 WUBlastX LINE_L2 400249 400689 34 - . . scaffold962 GLEAN mRNA 400970 411251 0.808842 - . ID=CGI_10027648; scaffold962 GLEAN promoter 411252 412251 0.808842 - . ID=CGI_10027648; scaffold962 TRF Tandem_Repeat 424979 425045 73 + . . scaffold962 TRF Tandem_Repeat 426123 426189 80 + . . scaffold962 WUBlastX LINE_L2 434919 435095 45 - . . scaffold962 WUBlastX LINE_L2 435167 435277 21 - . . scaffold962 GLEAN promoter 446981 447980 0.999508 + . ID=CGI_10027649; scaffold962 GLEAN mRNA 447981 462906 0.999508 + . ID=CGI_10027649; scaffold962 TRF Tandem_Repeat 454256 454294 78 + . . scaffold962 TRF Tandem_Repeat 456241 456374 153 + . . scaffold962 TRF Tandem_Repeat 458496 458588 82 + . . scaffold962 GLEAN promoter 465109 466108 0.999676 + . ID=CGI_10027650; scaffold962 GLEAN mRNA 466109 476242 0.999676 + . ID=CGI_10027650; scaffold962 TRF Tandem_Repeat 472579 472616 67 + . . scaffold962 TRF Tandem_Repeat 472821 473743 1429 + . . scaffold962 GLEAN promoter 475356 476355 1 + . ID=CGI_10027651; scaffold962 GLEAN mRNA 476356 481016 1 + . ID=CGI_10027651; scaffold962 GLEAN mRNA 482273 490152 0.848199 - . ID=CGI_10027652; scaffold962 TRF Tandem_Repeat 484686 484727 50 + . . scaffold962 TRF Tandem_Repeat 486843 486899 114 + . . scaffold962 TRF Tandem_Repeat 486899 486952 90 + . . scaffold962 GLEAN promoter 490153 491152 0.848199 - . ID=CGI_10027652; scaffold962 GLEAN mRNA 491307 500272 0.643152 - . ID=CGI_10027653; scaffold962 TRF Tandem_Repeat 494392 494509 227 + . . scaffold962 GLEAN promoter 500273 501272 0.643152 - . ID=CGI_10027653; scaffold962 GLEAN mRNA 501860 504165 0.999606 - . ID=CGI_10027654; scaffold962 GLEAN promoter 504166 505165 0.999606 - . ID=CGI_10027654; scaffold962 GLEAN promoter 504954 505953 0.499274 + . ID=CGI_10027655; scaffold962 GLEAN mRNA 505954 516857 0.499274 + . ID=CGI_10027655; scaffold962 TRF Tandem_Repeat 512867 512901 52 + . . scaffold962 GLEAN mRNA 516600 517310 1 - . ID=CGI_10027656; scaffold962 GLEAN promoter 517311 518310 1 - . ID=CGI_10027656; scaffold962 TRF Tandem_Repeat 521218 521257 80 + . . scaffold962 TRF Tandem_Repeat 548416 548457 59 + . . scaffold962 WUBlastX LINE_Penelope 549096 549446 52 - . . scaffold962 WUBlastX LTR_DIRS 556315 557232 216 + . . scaffold962 WUBlastX LTR_DIRS 557259 559391 1258 + . . scaffold962 WUBlastX LTR_DIRS 559169 560206 652 + . . scaffold962 TRF Tandem_Repeat 562493 562549 87 + . . scaffold962 TRF Tandem_Repeat 563527 563559 66 + . . scaffold962 TRF Tandem_Repeat 586986 587034 98 + . . scaffold962 TRF Tandem_Repeat 600679 600729 93 + . . scaffold962 GLEAN mRNA 605847 609991 0.632124 - . ID=CGI_10027657; scaffold962 TRF Tandem_Repeat 607468 607653 205 + . . scaffold962 GLEAN promoter 609992 610991 0.632124 - . ID=CGI_10027657; scaffold962 GLEAN promoter 613181 614180 0.999384 + . ID=CGI_10027658; scaffold962 GLEAN mRNA 614181 619821 0.999384 + . ID=CGI_10027658; scaffold962 TRF Tandem_Repeat 632301 632352 104 + . . scaffold962 GLEAN promoter 637730 638729 0.999488 + . ID=CGI_10027659; scaffold962 GLEAN mRNA 638730 646916 0.999488 + . ID=CGI_10027659; scaffold962 GLEAN promoter 646018 647017 0.999949 + . ID=CGI_10027660; scaffold962 GLEAN mRNA 647018 679401 0.999949 + . ID=CGI_10027660; scaffold962 TRF Tandem_Repeat 647582 647629 87 + . . scaffold962 TRF Tandem_Repeat 659770 659825 112 + . . scaffold962 TRF Tandem_Repeat 679161 679219 109 + . . scaffold962 TRF Tandem_Repeat 681463 681627 215 + . . scaffold962 GLEAN promoter 700953 701952 1 + . ID=CGI_10027661; scaffold962 GLEAN mRNA 701953 706684 1 + . ID=CGI_10027661; scaffold962 GLEAN mRNA 710503 715889 1 - . ID=CGI_10027662; scaffold962 TRF Tandem_Repeat 712027 712056 60 + . . scaffold962 GLEAN promoter 715475 716474 0.530362 + . ID=CGI_10027663; scaffold962 GLEAN promoter 715890 716889 1 - . ID=CGI_10027662; scaffold962 GLEAN mRNA 716475 718441 0.530362 + . ID=CGI_10027663; scaffold962 TRF Tandem_Repeat 723358 723408 102 + . . scaffold962 WUBlastX DNA_TcMar-Tc1 729516 729683 93 - . . scaffold962 WUBlastX DNA_TcMar-Tc1 729692 730513 264 - . . scaffold962 WUBlastX LINE_RTE-X 731321 731530 27 - . . scaffold962 WUBlastX LINE_RTE-X 731545 731655 63 - . . scaffold962 WUBlastX LINE_RTE-X 731795 732067 44 - . . scaffold962 GLEAN mRNA 737761 749184 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_CR1-L2 747081 747368 64 + . . scaffold962 WUBlastX LINE_L2 747198 747368 113 + . . scaffold962 WUBlastX LINE_L2 747331 747498 56 + . . scaffold962 WUBlastX LINE_L2 747492 747641 75 + . . scaffold962 WUBlastX LINE_CR1-L2 747581 748102 51 + . . scaffold962 WUBlastX LINE_CR1-L2 747656 747811 55 + . . scaffold962 WUBlastX LINE_CR1 747680 747811 78 + . . scaffold962 WUBlastX LINE_CR1-L2 748152 748316 24 + . . scaffold962 GLEAN promoter 749185 750184 0.279681 - . ID=CGI_10027664; scaffold962 WUBlastX LINE_Penelope 750611 751186 60 - . . scaffold962 TRF Tandem_Repeat 753523 753643 228 + . . scaffold962 WUBlastX LINE_Penelope 755518 755874 65 - . . scaffold962 WUBlastX LINE_Penelope 755569 755745 72 - . . scaffold962 TRF Tandem_Repeat 769299 769350 104 + . . scaffold962 GLEAN mRNA 772898 820857 0.754198 - . ID=CGI_10027665; scaffold962 WUBlastX DNA_TcMar-Fot1 801599 803212 578 + . . scaffold962 TRF Tandem_Repeat 807046 807128 112 + . . scaffold962 GLEAN promoter 820858 821857 0.754198 - . ID=CGI_10027665; scaffold962 GLEAN mRNA 820902 821831 0.813963 - . ID=CGI_10027666; scaffold962 GLEAN promoter 821832 822831 0.813963 - . ID=CGI_10027666; scaffold962 WUBlastX LTR_Gypsy 826573 830631 2131 - . . scaffold962 WUBlastX LTR_Gypsy 830338 830703 73 - . . scaffold962 GLEAN mRNA 835953 839633 0.763364 - . ID=CGI_10027667; scaffold962 GLEAN promoter 839634 840633 0.763364 - . ID=CGI_10027667; scaffold962 TRF Tandem_Repeat 844333 844473 122 + . . scaffold962 WUBlastX LINE_CR1-L2 862186 863133 177 - . . scaffold962 WUBlastX LINE_L2 862189 862941 307 - . . scaffold962 WUBlastX LINE_CR1-L2 863782 864516 220 - . . scaffold962 GLEAN mRNA 869295 871143 0.593383 - . ID=CGI_10027668; scaffold962 GLEAN promoter 871144 872143 0.593383 - . ID=CGI_10027668; scaffold962 TRF Tandem_Repeat 872681 872727 94 + . . scaffold962 TRF Tandem_Repeat 880985 881139 199 + . . scaffold962 GLEAN promoter 882814 883813 0.803493 + . ID=CGI_10027669; scaffold962 GLEAN mRNA 883814 884236 0.803493 + . ID=CGI_10027669; scaffold962 TRF Tandem_Repeat 885507 885997 685 + . . scaffold962 TRF Tandem_Repeat 889246 889295 66 + . . scaffold962 TRF Tandem_Repeat 892233 892282 100 + . . scaffold962 TRF Tandem_Repeat 893011 893074 83 + . . scaffold962 GLEAN promoter 894122 895121 0.455688 + . ID=CGI_10027670; scaffold962 TRF Tandem_Repeat 894909 894952 61 + . . scaffold962 TRF Tandem_Repeat 894909 894961 70 + . . scaffold962 GLEAN mRNA 895122 910659 0.455688 + . ID=CGI_10027670; scaffold962 WUBlastX LINE_RTE-BovB 898151 899161 141 - . . scaffold962 WUBlastX LINE_RTE-BovB 898522 898845 151 - . . scaffold962 WUBlastX LINE_L1 900155 900385 44 - . . scaffold962 WUBlastX LINE_L1 900263 900526 63 - . . scaffold962 WUBlastX LINE_L1-Tx1 900263 900409 87 - . . scaffold962 WUBlastX LINE_L1-Tx1 900546 900875 99 - . . scaffold962 WUBlastX LINE_L1-Tx1 900908 901330 25 - . . scaffold962 WUBlastX LINE_L1-Tx1 900959 901105 29 - . . scaffold962 WUBlastX LINE_L1 901323 901409 40 - . . scaffold962 TRF Tandem_Repeat 903631 903923 320 + . . scaffold962 TRF Tandem_Repeat 903664 903926 368 + . . scaffold962 TRF Tandem_Repeat 905066 905409 200 + . . scaffold962 TRF Tandem_Repeat 905094 905369 229 + . . scaffold962 TRF Tandem_Repeat 905094 905409 235 + . . scaffold962 GLEAN promoter 912394 913393 0.784502 + . ID=CGI_10027671; scaffold962 GLEAN mRNA 913394 928827 0.784502 + . ID=CGI_10027671; scaffold962 TRF Tandem_Repeat 929006 929081 129 + . . scaffold962 GLEAN promoter 929737 930736 0.999099 + . ID=CGI_10027672; scaffold962 GLEAN mRNA 930737 941572 0.999099 + . ID=CGI_10027672; scaffold962 TRF Tandem_Repeat 932529 932835 219 + . . scaffold962 TRF Tandem_Repeat 932529 932798 222 + . . scaffold962 TRF Tandem_Repeat 934154 934178 50 + . . scaffold962 TRF Tandem_Repeat 936648 936791 160 + . . scaffold962 TRF Tandem_Repeat 938427 938643 150 + . . scaffold962 TRF Tandem_Repeat 938433 938621 288 + . . scaffold962 TRF Tandem_Repeat 938965 939052 149 + . . scaffold962 TRF Tandem_Repeat 940627 941087 408 + . . scaffold962 GLEAN mRNA 944364 961671 0.998989 - . ID=CGI_10027673; scaffold962 TRF Tandem_Repeat 951340 951365 52 + . . scaffold962 TRF Tandem_Repeat 955916 955941 52 + . . scaffold962 GLEAN promoter 961672 962671 0.998989 - . ID=CGI_10027673; scaffold962 GLEAN mRNA 965990 978537 0.921741 - . ID=CGI_10027674; scaffold962 WUBlastX LINE_RTE-X 975104 975370 102 + . . scaffold962 WUBlastX LINE_RTE-X 975188 975367 102 + . . scaffold962 GLEAN promoter 978538 979537 0.921741 - . ID=CGI_10027674; scaffold962 GLEAN mRNA 983812 984159 0.999999 - . ID=CGI_10027675; scaffold962 GLEAN promoter 984160 985159 0.999999 - . ID=CGI_10027675; scaffold962 TRF Tandem_Repeat 988174 989187 773 + . . scaffold962 TRF Tandem_Repeat 988216 989187 877 + . . scaffold962 TRF Tandem_Repeat 988217 989187 949 + . . scaffold962 TRF Tandem_Repeat 995728 995771 88 + . . scaffold962 GLEAN mRNA 998516 1004457 0.593391 - . ID=CGI_10027676; scaffold962 TRF Tandem_Repeat 1001376 1002195 867 + . . scaffold962 GLEAN promoter 1003835 1004834 1 + . ID=CGI_10027677; scaffold962 GLEAN promoter 1004458 1005457 0.593391 - . ID=CGI_10027676; scaffold962 GLEAN mRNA 1004835 1008169 1 + . ID=CGI_10027677; scaffold962 GLEAN mRNA 1010385 1017383 0.985052 - . ID=CGI_10027678; scaffold962 GLEAN promoter 1017024 1018023 0.297676 + . ID=CGI_10027679; scaffold962 GLEAN promoter 1017384 1018383 0.985052 - . ID=CGI_10027678; scaffold962 GLEAN mRNA 1018024 1026352 0.297676 + . ID=CGI_10027679; scaffold962 TRF Tandem_Repeat 1026132 1026254 151 + . . scaffold962 GLEAN mRNA 1027701 1039886 0.999676 - . ID=CGI_10027680; scaffold962 TRF Tandem_Repeat 1030551 1030656 158 + . . scaffold962 TRF Tandem_Repeat 1031171 1031439 254 + . . scaffold962 TRF Tandem_Repeat 1031173 1031389 257 + . . scaffold962 TRF Tandem_Repeat 1031863 1032191 176 + . . scaffold962 TRF Tandem_Repeat 1031863 1032236 287 + . . scaffold962 TRF Tandem_Repeat 1031907 1032236 207 + . . scaffold962 TRF Tandem_Repeat 1031914 1032236 171 + . . scaffold962 GLEAN promoter 1039887 1040886 0.999676 - . ID=CGI_10027680; scaffold962 GLEAN mRNA 1041466 1069931 0.8139 - . ID=CGI_10027681; scaffold962 TRF Tandem_Repeat 1050503 1050737 416 + . . scaffold962 TRF Tandem_Repeat 1062008 1062103 192 + . . scaffold962 TRF Tandem_Repeat 1066641 1067034 192 + . . scaffold962 TRF Tandem_Repeat 1066641 1066875 201 + . . scaffold962 GLEAN promoter 1069932 1070931 0.8139 - . ID=CGI_10027681; scaffold962 TRF Tandem_Repeat 1071008 1071050 86 + . . scaffold962 TRF Tandem_Repeat 1073555 1073601 94 + . . scaffold962 TRF Tandem_Repeat 1075004 1075740 1057 + . . scaffold962 TRF Tandem_Repeat 1075005 1075632 1022 + . . scaffold962 TRF Tandem_Repeat 1075005 1075737 1069 + . . scaffold962 GLEAN mRNA 1076151 1078310 0.484738 - . ID=CGI_10027682; scaffold962 GLEAN promoter 1078311 1079310 0.484738 - . ID=CGI_10027682; scaffold962 GLEAN mRNA 1078349 1089726 1 - . ID=CGI_10027683; scaffold962 WUBlastX LINE_RTE-X 1086423 1087097 96 - . . scaffold962 WUBlastX LINE_RTE-X 1086495 1086956 135 - . . scaffold962 WUBlastX LINE_RTE-X 1086555 1087031 132 - . . scaffold962 WUBlastX LINE_L2 1087554 1087898 64 + . . scaffold962 WUBlastX LINE_CR1-L2 1087725 1087898 97 + . . scaffold962 WUBlastX LINE_L2 1087892 1088062 82 + . . scaffold962 WUBlastX LINE_CR1-L2 1087901 1088092 63 + . . scaffold962 WUBlastX LINE_CR1-L2 1088080 1088187 57 + . . scaffold962 GLEAN promoter 1089381 1090380 0.999611 + . ID=CGI_10027684; scaffold962 GLEAN promoter 1089727 1090726 1 - . ID=CGI_10027683; scaffold962 GLEAN mRNA 1090381 1096840 0.999611 + . ID=CGI_10027684; scaffold962 TRF Tandem_Repeat 1092454 1092503 75 + . . scaffold962 WUBlastX LINE_L1-Tx1 1093052 1095373 978 + . . scaffold962 GLEAN mRNA 1099824 1113366 0.604906 - . ID=CGI_10027685; scaffold962 TRF Tandem_Repeat 1101802 1102646 1026 + . . scaffold962 TRF Tandem_Repeat 1105742 1105770 58 + . . scaffold962 GLEAN promoter 1113367 1114366 0.604906 - . ID=CGI_10027685; scaffold962 GLEAN mRNA 1119783 1119986 0.914729 - . ID=CGI_10027686; scaffold962 GLEAN promoter 1119987 1120986 0.914729 - . ID=CGI_10027686; scaffold962 WUBlastX LINE_CR1-L2 1124993 1125322 55 - . . scaffold962 WUBlastX LINE_CR1-L2 1125328 1125471 31 - . . scaffold962 WUBlastX LINE_CR1-L2 1125444 1125770 122 - . . scaffold962 WUBlastX LINE_CR1-L2 1125477 1125902 110 - . . scaffold962 GLEAN mRNA 1127455 1191098 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1134029 1134078 75 + . . scaffold962 TRF Tandem_Repeat 1145267 1145295 58 + . . scaffold962 TRF Tandem_Repeat 1161313 1162598 1849 + . . scaffold962 TRF Tandem_Repeat 1162622 1162687 114 + . . scaffold962 TRF Tandem_Repeat 1162622 1162679 62 + . . scaffold962 TRF Tandem_Repeat 1162625 1162687 90 + . . scaffold962 TRF Tandem_Repeat 1162629 1162688 66 + . . scaffold962 TRF Tandem_Repeat 1164381 1164455 143 + . . scaffold962 TRF Tandem_Repeat 1172825 1173417 942 + . . scaffold962 TRF Tandem_Repeat 1188262 1188296 70 + . . scaffold962 GLEAN promoter 1191099 1192098 0.806507 - . ID=CGI_10027687; scaffold962 TRF Tandem_Repeat 1195648 1195706 91 + . . scaffold962 TRF Tandem_Repeat 1199597 1199639 86 + . . scaffold962 GLEAN mRNA 1206593 1210896 1 - . ID=CGI_10027688; scaffold962 GLEAN promoter 1210897 1211896 1 - . ID=CGI_10027688; scaffold962 GLEAN mRNA 1214975 1222675 1 - . ID=CGI_10027689; scaffold962 GLEAN promoter 1222676 1223675 1 - . ID=CGI_10027689; scaffold962 GLEAN promoter 1224386 1225385 0.98785 + . ID=CGI_10027690; scaffold962 GLEAN mRNA 1225386 1234408 0.98785 + . ID=CGI_10027690; scaffold962 GLEAN mRNA 1235971 1236957 1 - . ID=CGI_10027691; scaffold962 GLEAN promoter 1236958 1237957 1 - . ID=CGI_10027691; scaffold962 WUBlastX LINE_RTE-X 1237571 1237687 45 + . . scaffold962 WUBlastX LINE_RTE-X 1237767 1238039 27 + . . scaffold962 WUBlastX LINE_RTE-X 1238057 1238290 36 + . . scaffold962 WUBlastX LINE_RTE-X 1238063 1238218 82 + . . scaffold962 TRF Tandem_Repeat 1243998 1244026 58 + . . scaffold962 TRF Tandem_Repeat 1246117 1246191 150 + . . scaffold962 TRF Tandem_Repeat 1246880 1246908 58 + . . scaffold962 GLEAN mRNA 1248507 1250730 1 - . ID=CGI_10027692; scaffold962 TRF Tandem_Repeat 1249023 1249098 152 + . . scaffold962 GLEAN promoter 1250731 1251730 1 - . ID=CGI_10027692; scaffold962 WUBlastX LINE_L2 1257576 1257959 37 + . . scaffold962 WUBlastX LINE_L2 1257579 1257848 44 + . . scaffold962 WUBlastX LINE_L2 1257612 1257827 57 + . . scaffold962 WUBlastX LINE_L2 1257970 1258149 31 + . . scaffold962 WUBlastX LINE_L2 1258285 1258377 33 + . . scaffold962 WUBlastX LINE_L2 1258285 1258395 22 + . . scaffold962 GLEAN mRNA 1261655 1269649 0.559161 - . ID=CGI_10027693; scaffold962 GLEAN promoter 1269650 1270649 0.559161 - . ID=CGI_10027693; scaffold962 TRF Tandem_Repeat 1271827 1271897 124 + . . scaffold962 TRF Tandem_Repeat 1274193 1274227 61 + . . scaffold962 TRF Tandem_Repeat 1286677 1286709 57 + . . scaffold962 GLEAN promoter 1295826 1296825 0.889494 + . ID=CGI_10027694; scaffold962 GLEAN mRNA 1296826 1301555 0.889494 + . ID=CGI_10027694; scaffold962 GLEAN promoter 1314869 1315868 0.896664 + . ID=CGI_10027695; scaffold962 GLEAN mRNA 1315869 1333325 0.896664 + . ID=CGI_10027695; scaffold962 WUBlastX DNA_TcMar-Tc1 1323012 1323191 50 + . . scaffold962 TRF Tandem_Repeat 1352581 1352635 74 + . . scaffold962 TRF Tandem_Repeat 1352582 1352635 54 + . . scaffold962 TRF Tandem_Repeat 1371535 1371675 129 + . . scaffold962 TRF Tandem_Repeat 1372666 1372799 110 + . . scaffold962 TRF Tandem_Repeat 1394485 1394511 54 + . . scaffold962 TRF Tandem_Repeat 1394821 1394874 108 + . . scaffold962 GLEAN promoter 1399315 1400314 0.412716 + . ID=CGI_10027696; scaffold962 GLEAN mRNA 1400315 1401571 0.412716 + . ID=CGI_10027696; scaffold962 GLEAN mRNA 1404365 1418069 0.23217 - . ID=CGI_10027697; scaffold962 TRF Tandem_Repeat 1404791 1404826 63 + . . scaffold962 TRF Tandem_Repeat 1408772 1408838 125 + . . scaffold962 GLEAN promoter 1418070 1419069 0.23217 - . ID=CGI_10027697; scaffold962 GLEAN mRNA 1437476 1456245 0.463986 - . ID=CGI_10027698; scaffold962 TRF Tandem_Repeat 1450885 1451232 479 + . . scaffold962 TRF Tandem_Repeat 1451552 1451582 62 + . . scaffold962 TRF Tandem_Repeat 1452804 1452841 67 + . . scaffold962 TRF Tandem_Repeat 1452890 1452924 70 + . . scaffold962 GLEAN promoter 1456246 1457245 0.463986 - . ID=CGI_10027698; scaffold962 GLEAN promoter 1458483 1459482 0.99991 + . ID=CGI_10027699; scaffold962 TRF Tandem_Repeat 1458984 1459032 98 + . . scaffold962 GLEAN mRNA 1459483 1460713 0.99991 + . ID=CGI_10027699; scaffold962 WUBlastX DNA_IS4EU 1468712 1469215 188 + . . scaffold962 WUBlastX DNA_IS4EU 1468733 1469785 103 + . . scaffold962 WUBlastX DNA_IS4EU 1469390 1469779 137 + . . scaffold963 WUBlastX LINE_Jockey 5 163 35 - . . scaffold963 WUBlastX LINE_RTE-X 39 650 195 - . . scaffold963 WUBlastX LINE_RTE-X 174 638 256 - . . scaffold963 WUBlastX LINE_RTE-BovB 207 731 78 - . . scaffold963 WUBlastX LINE_RTE-X 2640 3407 84 - . . scaffold963 WUBlastX LINE_RTE-X 3626 3778 62 - . . scaffold963 TRF Tandem_Repeat 45310 45412 80 + . . scaffold963 TRF Tandem_Repeat 50022 50072 102 + . . scaffold963 TRF Tandem_Repeat 52323 52475 148 + . . scaffold963 TRF Tandem_Repeat 54852 54900 98 + . . scaffold963 GLEAN mRNA 61192 70868 0.999999 - . ID=CGI_10015615; scaffold963 WUBlastX LINE_RTE-X 63283 63657 21 - . . scaffold963 WUBlastX LINE_RTE-X 63343 63657 85 - . . scaffold963 WUBlastX LINE_RTE-X 63448 63657 100 - . . scaffold963 TRF Tandem_Repeat 64337 64382 92 + . . scaffold963 GLEAN promoter 70869 71868 0.999999 - . ID=CGI_10015615; scaffold963 GLEAN mRNA 72708 75358 0.999676 - . ID=CGI_10015616; scaffold963 GLEAN promoter 75359 76358 0.999676 - . ID=CGI_10015616; scaffold963 TRF Tandem_Repeat 78338 78395 109 + . . scaffold963 GLEAN promoter 78365 79364 0.593198 + . ID=CGI_10015617; scaffold963 GLEAN mRNA 79365 83683 0.593198 + . ID=CGI_10015617; scaffold963 TRF Tandem_Repeat 84314 84345 55 + . . scaffold963 GLEAN mRNA 84667 89841 0.999661 - . ID=CGI_10015618; scaffold963 GLEAN promoter 89842 90841 0.999661 - . ID=CGI_10015618; scaffold963 GLEAN promoter 90677 91676 1 + . ID=CGI_10015619; scaffold963 GLEAN mRNA 91677 101893 1 + . ID=CGI_10015619; scaffold963 WUBlastX LINE_RTE-BovB 101409 101735 79 - . . scaffold963 GLEAN mRNA 104445 113564 0.593391 - . ID=CGI_10015620; scaffold963 GLEAN promoter 113565 114564 0.593391 - . ID=CGI_10015620; scaffold963 TRF Tandem_Repeat 117547 117592 92 + . . scaffold963 TRF Tandem_Repeat 117592 117620 58 + . . scaffold963 TRF Tandem_Repeat 123241 123448 326 + . . scaffold963 TRF Tandem_Repeat 123660 123898 199 + . . scaffold963 TRF Tandem_Repeat 123689 123896 105 + . . scaffold963 TRF Tandem_Repeat 123754 123904 115 + . . scaffold963 TRF Tandem_Repeat 125936 126256 272 + . . scaffold963 TRF Tandem_Repeat 125936 126258 408 + . . scaffold963 TRF Tandem_Repeat 125936 126256 263 + . . scaffold963 TRF Tandem_Repeat 126654 126815 191 + . . scaffold963 GLEAN mRNA 133315 134622 0.999991 - . ID=CGI_10015621; scaffold963 GLEAN promoter 134623 135622 0.999991 - . ID=CGI_10015621; scaffold963 GLEAN promoter 148664 149663 0.691989 + . ID=CGI_10015622; scaffold963 TRF Tandem_Repeat 149123 149220 196 + . . scaffold963 TRF Tandem_Repeat 149222 149261 80 + . . scaffold963 GLEAN mRNA 149664 150023 0.691989 + . ID=CGI_10015622; scaffold963 TRF Tandem_Repeat 159241 159275 61 + . . scaffold963 WUBlastX LTR_DIRS 160337 160846 242 - . . scaffold963 WUBlastX LTR_DIRS 160837 161130 74 - . . scaffold963 WUBlastX LTR_DIRS 161163 161312 20 - . . scaffold963 WUBlastX LTR_DIRS 161598 162590 332 - . . scaffold963 WUBlastX LTR_DIRS 162541 162678 24 - . . scaffold963 TRF Tandem_Repeat 164276 164335 102 + . . scaffold963 TRF Tandem_Repeat 164276 164335 66 + . . scaffold963 TRF Tandem_Repeat 164839 164916 156 + . . scaffold963 TRF Tandem_Repeat 164914 164938 50 + . . scaffold963 TRF Tandem_Repeat 165126 165164 78 + . . scaffold963 TRF Tandem_Repeat 187432 187527 128 + . . scaffold963 TRF Tandem_Repeat 187445 187527 148 + . . scaffold963 TRF Tandem_Repeat 189571 189609 78 + . . scaffold963 TRF Tandem_Repeat 204183 204220 76 + . . scaffold963 TRF Tandem_Repeat 204347 204403 114 + . . scaffold963 TRF Tandem_Repeat 213606 213672 56 + . . scaffold963 TRF Tandem_Repeat 213610 213672 60 + . . scaffold963 TRF Tandem_Repeat 213710 213800 66 + . . scaffold963 TRF Tandem_Repeat 213717 213800 57 + . . scaffold963 WUBlastX LINE_RTE-X 217041 217370 68 + . . scaffold963 WUBlastX LINE_RTE-X 217119 217442 59 + . . scaffold963 GLEAN promoter 240234 241233 0.994612 + . ID=CGI_10015623; scaffold963 GLEAN mRNA 241234 248122 0.994612 + . ID=CGI_10015623; scaffold963 TRF Tandem_Repeat 244703 246042 1280 + . . scaffold963 WUBlastX LINE_CR1 253307 254053 25 + . . scaffold963 WUBlastX LINE_L2 253469 254158 296 + . . scaffold963 GLEAN mRNA 265085 265282 0.999067 - . ID=CGI_10015624; scaffold963 GLEAN promoter 265283 266282 0.999067 - . ID=CGI_10015624; scaffold963 TRF Tandem_Repeat 268611 268650 80 + . . scaffold963 GLEAN promoter 275602 276601 0.481704 + . ID=CGI_10015625; scaffold963 GLEAN mRNA 276602 276931 0.481704 + . ID=CGI_10015625; scaffold963 TRF Tandem_Repeat 285093 285131 78 + . . scaffold963 WUBlastX LTR_Ngaro 288015 288917 416 - . . scaffold963 WUBlastX LTR_Ngaro 288887 290488 1034 - . . scaffold963 WUBlastX LTR_Gypsy 289679 290632 41 - . . scaffold963 WUBlastX LTR_Ngaro 290679 291185 69 - . . scaffold963 WUBlastX LTR_Ngaro 290811 291572 188 - . . scaffold963 WUBlastX LINE_L2 293261 293635 72 + . . scaffold963 WUBlastX LINE_L1 293318 293725 75 + . . scaffold963 WUBlastX LINE_L1-Tx1 293581 293847 101 + . . scaffold963 WUBlastX LINE_L1-Tx1 293626 293868 119 + . . scaffold963 WUBlastX LINE_L2 293719 295404 120 + . . scaffold963 WUBlastX LINE_RTE-X 294115 296121 442 + . . scaffold963 WUBlastX LINE_RTE-X 294151 295455 636 + . . scaffold963 WUBlastX LINE_RTE-X 296718 297455 151 - . . scaffold963 WUBlastX LINE_RTE-X 296847 297437 159 - . . scaffold963 WUBlastX LINE_RTE-X 297376 297672 164 - . . scaffold963 WUBlastX LINE_RTE-X 297427 297720 115 - . . scaffold963 WUBlastX LINE_L2 297686 299209 64 - . . scaffold963 WUBlastX LINE_RTE-X 298013 299254 636 - . . scaffold963 WUBlastX LINE_CR1 298304 299464 105 - . . scaffold963 WUBlastX LINE_RTE-X 299284 299811 28 - . . scaffold963 WUBlastX LINE_RTE-X 299811 300500 153 - . . scaffold963 WUBlastX LINE_RTE-X 299994 300503 158 - . . scaffold963 TRF Tandem_Repeat 309091 309115 50 + . . scaffold963 WUBlastX DNA_IS4EU 312492 312728 34 + . . scaffold963 WUBlastX DNA_Kolobok-IS4 312543 312713 41 + . . scaffold963 WUBlastX DNA_IS4EU 312585 312713 52 + . . scaffold963 WUBlastX DNA_IS4EU 312730 312867 20 + . . scaffold963 WUBlastX DNA_Kolobok-IS4 312766 312867 21 + . . scaffold963 WUBlastX DNA_IS4EU 312784 312867 32 + . . scaffold963 WUBlastX DNA_IS4EU 312869 313330 204 + . . scaffold963 WUBlastX DNA_IS4EU 314104 314307 86 - . . scaffold963 WUBlastX DNA_IS4EU 314429 314515 39 - . . scaffold963 WUBlastX DNA_IS4EU 315319 315519 31 - . . scaffold963 WUBlastX DNA_IS4EU 315346 315426 43 - . . scaffold963 WUBlastX LINE_L1-Tx1 329146 329397 22 - . . scaffold963 TRF Tandem_Repeat 360978 361048 142 + . . scaffold963 TRF Tandem_Repeat 361906 361964 111 + . . scaffold963 TRF Tandem_Repeat 365612 365669 116 + . . scaffold963 WUBlastX LTR_Gypsy 375214 375879 49 - . . scaffold963 WUBlastX LTR_Gypsy 375367 377313 1233 - . . scaffold963 WUBlastX LTR_Gypsy 377303 379453 1258 - . . scaffold963 WUBlastX LTR_Gypsy 379465 380538 163 - . . scaffold963 WUBlastX LTR_Gypsy 379486 380397 238 - . . scaffold963 TRF Tandem_Repeat 381995 382172 71 + . . scaffold963 WUBlastX LINE_L2 383423 383674 66 - . . scaffold963 GLEAN promoter 413831 414830 1 + . ID=CGI_10015626; scaffold963 GLEAN mRNA 414831 422253 1 + . ID=CGI_10015626; scaffold963 GLEAN mRNA 425776 428607 1 - . ID=CGI_10015627; scaffold963 GLEAN promoter 428608 429607 1 - . ID=CGI_10015627; scaffold963 TRF Tandem_Repeat 429762 429830 93 + . . scaffold963 WUBlastX LINE_RTE-X 431526 431843 62 - . . scaffold963 WUBlastX LINE_RTE-X 431945 432067 49 - . . scaffold963 WUBlastX LINE_RTE-X 431954 432295 21 - . . scaffold963 WUBlastX LINE_RTE-X 432097 432189 35 - . . scaffold963 WUBlastX LINE_RTE-X 432303 433073 232 - . . scaffold964 WUBlastX LTR_Pao 3 377 268 + . . scaffold964 GLEAN mRNA 10481 10849 0.990832 - . ID=CGI_10009726; scaffold964 GLEAN promoter 10850 11849 0.990832 - . ID=CGI_10009726; scaffold964 WUBlastX DNA_hAT-Tip100 18143 18352 126 - . . scaffold964 WUBlastX LTR_Gypsy 23003 25285 1802 + . . scaffold964 WUBlastX LTR_Gypsy 25282 26577 1050 + . . scaffold964 WUBlastX LTR_Gypsy 25288 26865 670 + . . scaffold964 WUBlastX LTR_Gypsy 26646 26915 51 + . . scaffold964 WUBlastX LINE_Penelope 27940 28752 162 + . . scaffold964 WUBlastX LINE_Penelope 28090 30282 324 + . . scaffold964 WUBlastX LINE_Penelope 30064 30327 35 + . . scaffold964 WUBlastX LINE_Penelope 30548 30778 33 + . . scaffold964 WUBlastX LINE_Penelope 30551 30676 44 + . . scaffold964 GLEAN promoter 33148 34147 0.41936 + . ID=CGI_10009727; scaffold964 GLEAN mRNA 34148 39936 0.41936 + . ID=CGI_10009727; scaffold964 WUBlastX LINE_L1-Tx1 37395 37574 33 + . . scaffold964 WUBlastX LTR_DIRS 51930 52319 186 - . . scaffold964 WUBlastX LTR_DIRS 52319 52561 72 - . . scaffold964 WUBlastX LTR_DIRS 52853 53056 30 - . . scaffold964 WUBlastX LTR_DIRS 52853 52999 43 - . . scaffold964 WUBlastX LTR_DIRS 52904 53023 32 - . . scaffold964 WUBlastX LTR_Gypsy 52931 53086 23 - . . scaffold964 WUBlastX LTR_DIRS 53588 53995 101 - . . scaffold964 WUBlastX LTR_DIRS 53720 54304 223 - . . scaffold964 WUBlastX LTR_Gypsy 54393 54479 25 - . . scaffold964 WUBlastX LTR_DIRS 54414 54902 79 - . . scaffold964 GLEAN promoter 60497 61496 0.984418 + . ID=CGI_10009728; scaffold964 GLEAN mRNA 61497 66246 0.984418 + . ID=CGI_10009728; scaffold964 GLEAN mRNA 66518 70854 0.999999 - . ID=CGI_10009729; scaffold964 GLEAN promoter 69913 70912 0.544809 + . ID=CGI_10009730; scaffold964 WUBlastX LTR_Gypsy 70820 71005 24 + . . scaffold964 GLEAN promoter 70855 71854 0.999999 - . ID=CGI_10009729; scaffold964 GLEAN mRNA 70913 72246 0.544809 + . ID=CGI_10009730; scaffold964 TRF Tandem_Repeat 71048 71078 62 + . . scaffold964 TRF Tandem_Repeat 75306 76267 1503 + . . scaffold964 GLEAN promoter 77249 78248 1 + . ID=CGI_10009731; scaffold964 GLEAN mRNA 78249 92863 1 + . ID=CGI_10009731; scaffold964 GLEAN mRNA 96785 130355 0.999854 - . ID=CGI_10009732; scaffold964 TRF Tandem_Repeat 101257 101308 86 + . . scaffold964 TRF Tandem_Repeat 103121 103985 1317 + . . scaffold964 TRF Tandem_Repeat 113645 114570 1220 + . . scaffold964 TRF Tandem_Repeat 129408 129453 92 + . . scaffold964 GLEAN promoter 130356 131355 0.999854 - . ID=CGI_10009732; scaffold964 GLEAN mRNA 130936 131226 0.99923 - . ID=CGI_10009733; scaffold964 GLEAN promoter 131227 132226 0.99923 - . ID=CGI_10009733; scaffold964 WUBlastX LTR_Gypsy 132295 132537 66 - . . scaffold964 WUBlastX LTR_Gypsy-Cigr 132367 132738 94 - . . scaffold964 TRF Tandem_Repeat 138032 138081 86 + . . scaffold964 WUBlastX LINE_RTE-X 139457 139729 65 - . . scaffold964 WUBlastX LINE_RTE-X 139550 139729 109 - . . scaffold964 TRF Tandem_Repeat 143003 143051 80 + . . scaffold964 TRF Tandem_Repeat 144757 144787 53 + . . scaffold964 WUBlastX LTR_Ngaro 148543 149385 98 + . . scaffold964 WUBlastX LTR_Ngaro 148966 149409 218 + . . scaffold964 WUBlastX LTR_Ngaro 149519 150463 174 + . . scaffold964 WUBlastX LTR_Ngaro 149678 150259 407 + . . scaffold964 WUBlastX LTR_Ngaro 150256 150996 387 + . . scaffold964 WUBlastX LTR_Ngaro 150843 151241 144 + . . scaffold964 WUBlastX LTR_Ngaro 151217 151942 217 + . . scaffold964 GLEAN mRNA 152707 153117 0.99923 - . ID=CGI_10009734; scaffold964 GLEAN promoter 153118 154117 0.99923 - . ID=CGI_10009734; scaffold964 WUBlastX LINE_RTE-X 169127 169414 35 + . . scaffold964 WUBlastX LINE_RTE-X 169271 169414 53 + . . scaffold964 WUBlastX LINE_RTE-X 169416 169493 35 + . . scaffold964 WUBlastX LINE_RTE-X 169425 169481 39 + . . scaffold964 WUBlastX LINE_RTE-X 169428 169589 25 + . . scaffold964 TRF Tandem_Repeat 173196 173249 108 + . . scaffold964 TRF Tandem_Repeat 208371 209401 1501 + . . scaffold964 GLEAN mRNA 212100 240231 0.999794 - . ID=CGI_10009735; scaffold964 TRF Tandem_Repeat 219386 219476 85 + . . scaffold964 TRF Tandem_Repeat 222208 222624 493 + . . scaffold964 WUBlastX LTR_Ngaro 223368 223991 185 + . . scaffold964 WUBlastX LTR_Ngaro 224047 224289 169 + . . scaffold964 WUBlastX LTR_Ngaro 224293 224508 125 + . . scaffold964 WUBlastX LTR_Ngaro 224436 225287 386 + . . scaffold964 WUBlastX LTR_Ngaro 225294 225770 121 + . . scaffold964 WUBlastX LTR_Ngaro 225423 225890 157 + . . scaffold964 TRF Tandem_Repeat 226425 226522 72 + . . scaffold964 GLEAN promoter 240232 240823 0.999794 - . ID=CGI_10009735; scaffold964 TRF Tandem_Repeat 240385 240419 70 + . . scaffold966 WUBlastX LINE_RTE-BovB 8363 8596 37 + . . scaffold966 WUBlastX LINE_RTE-BovB 8604 8651 24 + . . scaffold966 TRF Tandem_Repeat 8771 8807 74 + . . scaffold966 TRF Tandem_Repeat 14446 14481 63 + . . scaffold966 TRF Tandem_Repeat 20549 20601 106 + . . scaffold966 TRF Tandem_Repeat 29060 29128 122 + . . scaffold967 GLEAN mRNA 206 1698 1 - . ID=CGI_10015453; scaffold967 GLEAN promoter 1699 2698 1 - . ID=CGI_10015453; scaffold967 WUBlastX LINE_L1-Tx1 34394 35026 373 - . . scaffold967 WUBlastX LINE_L1-Tx1 35025 35516 186 - . . scaffold967 WUBlastX LINE_L1-Tx1 35527 36009 160 - . . scaffold967 WUBlastX LINE_L1-Tx1 35976 36281 190 - . . scaffold967 WUBlastX LINE_L1 36296 36529 37 - . . scaffold967 WUBlastX LINE_L1 36475 36636 25 - . . scaffold967 WUBlastX LINE_L1 36487 36591 37 - . . scaffold967 WUBlastX LINE_L2 36862 37434 85 - . . scaffold967 WUBlastX LINE_CR1-L2 36967 37668 138 - . . scaffold967 TRF Tandem_Repeat 40966 40995 51 + . . scaffold967 TRF Tandem_Repeat 42159 42202 88 + . . scaffold967 WUBlastX LINE_RTE-X 49185 49334 96 + . . scaffold967 TRF Tandem_Repeat 53276 53630 417 + . . scaffold967 TRF Tandem_Repeat 55999 56038 73 + . . scaffold967 WUBlastX DNA_Crypton 56987 57613 40 + . . scaffold967 TRF Tandem_Repeat 63061 63167 70 + . . scaffold967 TRF Tandem_Repeat 65295 65449 184 + . . scaffold967 WUBlastX LINE_RTE-X 68382 68603 31 - . . scaffold967 WUBlastX LINE_RTE-X 68447 69013 42 - . . scaffold967 WUBlastX LINE_RTE-X 68732 68932 75 - . . scaffold967 WUBlastX LINE_RTE-X 68792 69013 80 - . . scaffold967 TRF Tandem_Repeat 98005 98037 66 + . . scaffold967 GLEAN promoter 126443 127442 0.997345 + . ID=CGI_10015454; scaffold967 GLEAN mRNA 127443 132839 0.997345 + . ID=CGI_10015454; scaffold967 WUBlastX LTR_ERV1 129714 129893 24 - . . scaffold967 WUBlastX LTR_Copia 129906 130013 32 - . . scaffold967 TRF Tandem_Repeat 136053 136094 84 + . . scaffold967 WUBlastX LTR_Gypsy 138669 138731 41 + . . scaffold967 WUBlastX LTR_Gypsy 138830 138931 42 + . . scaffold967 WUBlastX LTR_Gypsy 138848 139075 29 + . . scaffold967 GLEAN mRNA 143447 143749 0.618144 - . ID=CGI_10015455; scaffold967 GLEAN promoter 143750 144749 0.618144 - . ID=CGI_10015455; scaffold967 GLEAN mRNA 143924 144238 0.999304 - . ID=CGI_10015456; scaffold967 WUBlastX LTR_Gypsy 144020 144415 52 - . . scaffold967 WUBlastX LTR_Gypsy 144233 144466 89 - . . scaffold967 GLEAN promoter 144239 145238 0.999304 - . ID=CGI_10015456; scaffold967 WUBlastX LINE_Jockey 146661 146918 35 - . . scaffold967 WUBlastX DNA_IS4EU 146766 146900 47 - . . scaffold967 TRF Tandem_Repeat 150478 150521 70 + . . scaffold967 TRF Tandem_Repeat 150491 150524 50 + . . scaffold967 WUBlastX DNA_Harbinger 153586 153807 56 + . . scaffold967 WUBlastX DNA_Harbinger 162589 162723 47 + . . scaffold967 WUBlastX DNA_Harbinger 163479 163631 51 - . . scaffold967 WUBlastX DNA_Harbinger 168882 169604 314 - . . scaffold967 WUBlastX DNA_IS4EU 171870 172139 39 + . . scaffold967 GLEAN mRNA 176022 180738 0.999992 - . ID=CGI_10015457; scaffold967 GLEAN promoter 180739 181738 0.999992 - . ID=CGI_10015457; scaffold967 GLEAN mRNA 186237 191251 0.999661 - . ID=CGI_10015458; scaffold967 GLEAN promoter 191252 192251 0.999661 - . ID=CGI_10015458; scaffold967 TRF Tandem_Repeat 192131 192322 210 + . . scaffold967 GLEAN promoter 195029 196028 0.99466 + . ID=CGI_10015459; scaffold967 GLEAN mRNA 196029 202097 0.99466 + . ID=CGI_10015459; scaffold967 GLEAN mRNA 204115 208770 1 - . ID=CGI_10015460; scaffold967 GLEAN promoter 208771 209770 1 - . ID=CGI_10015460; scaffold967 GLEAN promoter 209935 210934 0.931586 + . ID=CGI_10015461; scaffold967 GLEAN mRNA 210935 232101 0.931586 + . ID=CGI_10015461; scaffold967 TRF Tandem_Repeat 212961 213006 92 + . . scaffold967 TRF Tandem_Repeat 217604 217653 100 + . . scaffold967 TRF Tandem_Repeat 229727 229754 56 + . . scaffold967 TRF Tandem_Repeat 229830 229863 68 + . . scaffold967 WUBlastX DNA_hAT-Tip100 231444 231710 80 + . . scaffold967 WUBlastX DNA_hAT-Tip100 231495 231710 116 + . . scaffold967 TRF Tandem_Repeat 255706 255762 79 + . . scaffold967 TRF Tandem_Repeat 257031 257067 74 + . . scaffold967 TRF Tandem_Repeat 258290 258319 51 + . . scaffold967 TRF Tandem_Repeat 260987 261040 99 + . . scaffold967 GLEAN promoter 279733 280732 0.999676 + . ID=CGI_10015462; scaffold967 GLEAN mRNA 280733 285257 0.999676 + . ID=CGI_10015462; scaffold967 TRF Tandem_Repeat 320199 320226 56 + . . scaffold967 TRF Tandem_Repeat 320255 320323 138 + . . scaffold967 TRF Tandem_Repeat 323397 323489 96 + . . scaffold967 TRF Tandem_Repeat 323794 323914 124 + . . scaffold967 TRF Tandem_Repeat 324159 324200 75 + . . scaffold967 TRF Tandem_Repeat 324644 324779 163 + . . scaffold967 WUBlastX LINE_L2 325231 325620 44 + . . scaffold967 WUBlastX LINE_CR1-L2 325306 325620 82 + . . scaffold967 TRF Tandem_Repeat 329731 329772 84 + . . scaffold967 GLEAN promoter 329769 330768 1 + . ID=CGI_10015463; scaffold967 GLEAN mRNA 330769 334091 1 + . ID=CGI_10015463; scaffold967 WUBlastX LINE_RTE-X 331778 332032 28 + . . scaffold967 WUBlastX LINE_RTE-X 331838 332017 75 + . . scaffold967 GLEAN mRNA 334983 336104 0.998092 - . ID=CGI_10015464; scaffold967 GLEAN promoter 336105 337104 0.998092 - . ID=CGI_10015464; scaffold967 GLEAN promoter 337708 338707 1 + . ID=CGI_10015465; scaffold967 GLEAN mRNA 338708 340937 1 + . ID=CGI_10015465; scaffold967 TRF Tandem_Repeat 340162 340207 92 + . . scaffold967 TRF Tandem_Repeat 346959 347045 147 + . . scaffold967 GLEAN promoter 347273 348272 0.726888 + . ID=CGI_10015466; scaffold967 GLEAN mRNA 348273 360574 0.726888 + . ID=CGI_10015466; scaffold967 TRF Tandem_Repeat 349633 349756 76 + . . scaffold967 TRF Tandem_Repeat 349640 349830 154 + . . scaffold967 TRF Tandem_Repeat 349708 349812 63 + . . scaffold967 TRF Tandem_Repeat 350444 350537 125 + . . scaffold967 TRF Tandem_Repeat 350584 350672 137 + . . scaffold967 TRF Tandem_Repeat 352207 352254 78 + . . scaffold967 GLEAN mRNA 352653 356948 0.983588 - . ID=CGI_10015467; scaffold967 TRF Tandem_Repeat 355631 355786 125 + . . scaffold967 TRF Tandem_Repeat 355941 356165 351 + . . scaffold967 GLEAN promoter 356949 357948 0.983588 - . ID=CGI_10015467; scaffold967 TRF Tandem_Repeat 361023 361064 84 + . . scaffold967 TRF Tandem_Repeat 361612 361660 98 + . . scaffold967 WUBlastX LINE_L2 362513 363046 43 + . . scaffold967 WUBlastX LINE_L2 362594 363088 228 + . . scaffold967 WUBlastX LINE_L2 363037 363354 60 + . . scaffold967 TRF Tandem_Repeat 365289 365487 129 + . . scaffold967 GLEAN mRNA 373012 375472 0.865648 - . ID=CGI_10015468; scaffold967 GLEAN promoter 375473 376472 0.865648 - . ID=CGI_10015468; scaffold967 TRF Tandem_Repeat 376274 376313 71 + . . scaffold967 TRF Tandem_Repeat 377362 377401 80 + . . scaffold967 TRF Tandem_Repeat 381048 381084 74 + . . scaffold967 GLEAN mRNA 381903 408784 0.990903 - . ID=CGI_10015469; scaffold967 TRF Tandem_Repeat 383114 383394 438 + . . scaffold967 TRF Tandem_Repeat 384692 385036 496 + . . scaffold967 TRF Tandem_Repeat 395920 396392 820 + . . scaffold967 TRF Tandem_Repeat 407313 407348 72 + . . scaffold967 GLEAN promoter 408785 409784 0.990903 - . ID=CGI_10015469; scaffold967 TRF Tandem_Repeat 410557 410600 65 + . . scaffold967 GLEAN mRNA 413071 422849 0.644956 - . ID=CGI_10015470; scaffold967 GLEAN promoter 422850 423849 0.644956 - . ID=CGI_10015470; scaffold967 TRF Tandem_Repeat 423651 423690 80 + . . scaffold967 TRF Tandem_Repeat 424561 425053 716 + . . scaffold968 GLEAN mRNA 464 13551 0.999998 - . ID=CGI_10006288; scaffold968 TRF Tandem_Repeat 571 598 56 + . . scaffold968 GLEAN promoter 13552 14551 0.999998 - . ID=CGI_10006288; scaffold968 GLEAN mRNA 17581 21806 0.84993 - . ID=CGI_10006289; scaffold968 GLEAN promoter 21807 22806 0.84993 - . ID=CGI_10006289; scaffold968 GLEAN promoter 28953 29952 1 + . ID=CGI_10006290; scaffold968 GLEAN mRNA 29953 37445 1 + . ID=CGI_10006290; scaffold968 GLEAN mRNA 38618 39289 1 - . ID=CGI_10006291; scaffold968 GLEAN promoter 39290 40289 1 - . ID=CGI_10006291; scaffold968 GLEAN mRNA 41718 54701 0.99967 - . ID=CGI_10006292; scaffold968 GLEAN promoter 54702 55701 0.99967 - . ID=CGI_10006292; scaffold968 WUBlastX LTR_Pao 57104 57511 80 + . . scaffold968 GLEAN mRNA 58838 70295 0.525344 - . ID=CGI_10006294; scaffold968 TRF Tandem_Repeat 62993 63048 112 + . . scaffold968 TRF Tandem_Repeat 63054 63079 52 + . . scaffold968 TRF Tandem_Repeat 68445 68469 50 + . . scaffold968 GLEAN promoter 70296 71295 0.525344 - . ID=CGI_10006294; scaffold968 WUBlastX DNA_Maverick 71348 71683 52 + . . scaffold968 WUBlastX DNA_Maverick 71402 71674 56 + . . scaffold968 GLEAN mRNA 71911 78167 0.662952 - . ID=CGI_10006295; scaffold968 GLEAN promoter 72522 73521 0.999675 + . ID=CGI_10006296; scaffold968 GLEAN mRNA 73522 82805 0.999675 + . ID=CGI_10006296; scaffold968 TRF Tandem_Repeat 73749 73775 54 + . . scaffold968 GLEAN promoter 78168 79167 0.662952 - . ID=CGI_10006295; scaffold968 TRF Tandem_Repeat 80007 80074 55 + . . scaffold968 TRF Tandem_Repeat 80007 80066 75 + . . scaffold968 TRF Tandem_Repeat 80016 80075 66 + . . scaffold968 WUBlastX LINE_RTE-X 83331 83426 25 - . . scaffold968 WUBlastX LINE_RTE-X 83340 83420 40 - . . scaffold968 WUBlastX LINE_RTE-X 84211 84546 104 - . . scaffold968 WUBlastX LINE_RTE-X 84340 84813 120 - . . scaffold968 TRF Tandem_Repeat 86118 86169 104 + . . scaffold968 WUBlastX LTR_Gypsy 87685 89547 935 - . . scaffold968 WUBlastX LTR_Gypsy 89029 89739 166 - . . scaffold968 WUBlastX LTR_Gypsy 89660 90427 793 - . . scaffold968 WUBlastX LTR_Gypsy 90430 91830 487 - . . scaffold968 TRF Tandem_Repeat 96697 96734 51 + . . scaffold968 TRF Tandem_Repeat 103231 103266 54 + . . scaffold968 GLEAN promoter 109087 110086 0.425641 + . ID=CGI_10006297; scaffold968 GLEAN mRNA 110087 120737 0.425641 + . ID=CGI_10006297; scaffold968 TRF Tandem_Repeat 111134 111208 143 + . . scaffold968 TRF Tandem_Repeat 114040 114100 122 + . . scaffold968 WUBlastX LINE_RTE-X 114350 115366 249 + . . scaffold968 WUBlastX LINE_RTE-X 114560 116770 765 + . . scaffold968 TRF Tandem_Repeat 116880 116939 57 + . . scaffold968 TRF Tandem_Repeat 118348 118708 332 + . . scaffold968 TRF Tandem_Repeat 118496 118708 318 + . . scaffold968 TRF Tandem_Repeat 118826 118946 143 + . . scaffold968 WUBlastX LINE_CR1 119373 120161 201 + . . scaffold968 WUBlastX LINE_I 119628 120638 27 + . . scaffold968 WUBlastX LINE_L1-Tx1 120958 122511 498 + . . scaffold968 WUBlastX LINE_L1-Tx1 122469 123998 578 + . . scaffold968 GLEAN promoter 126312 127311 0.618241 + . ID=CGI_10006298; scaffold968 GLEAN mRNA 127312 127632 0.618241 + . ID=CGI_10006298; scaffold968 WUBlastX LTR_Copia 139160 139363 167 - . . scaffold968 WUBlastX LTR_Copia 139375 141270 1143 - . . scaffold968 WUBlastX LINE_L1-Tx1 143778 144107 37 + . . scaffold968 WUBlastX LINE_L1-Tx1 143889 144095 59 + . . scaffold968 WUBlastX LINE_L1 143913 144134 39 + . . scaffold968 WUBlastX LINE_L1-Tx1 144184 144861 52 + . . scaffold968 WUBlastX LINE_L1 144637 144861 54 + . . scaffold968 WUBlastX LINE_L1-Tx1 144679 144894 52 + . . scaffold968 WUBlastX LINE_L1 144893 145141 38 + . . scaffold968 WUBlastX LINE_L1 144971 145198 58 + . . scaffold968 WUBlastX LINE_L1 144971 145156 71 + . . scaffold968 WUBlastX LINE_L1-Tx1 145161 145247 35 + . . scaffold968 WUBlastX LINE_L1-Tx1 145253 145726 112 + . . scaffold968 WUBlastX LINE_L1-Tx1 145253 145834 106 + . . scaffold969 WUBlastX LTR_Pao 3 1325 1057 - . . scaffold969 WUBlastX LTR_Pao 1077 1388 74 - . . scaffold97 GLEAN mRNA 10256 14932 0.72876 - . ID=CGI_10005681; scaffold97 TRF Tandem_Repeat 13571 13596 52 + . . scaffold97 GLEAN promoter 14933 15932 0.72876 - . ID=CGI_10005681; scaffold97 WUBlastX LTR_Gypsy 15293 15436 23 + . . scaffold97 WUBlastX LTR_Gypsy-Cigr 15564 16019 148 + . . scaffold97 WUBlastX LTR_Gypsy 16019 16219 140 + . . scaffold97 WUBlastX LTR_Gypsy 16219 16692 216 + . . scaffold97 WUBlastX LTR_Gypsy-Cigr 16219 16599 391 + . . scaffold97 TRF Tandem_Repeat 19590 19632 86 + . . scaffold97 WUBlastX LTR_Gypsy 20916 21284 34 + . . scaffold97 WUBlastX LTR_Gypsy 20979 21215 57 + . . scaffold97 WUBlastX LTR_Gypsy 21021 21221 63 + . . scaffold97 WUBlastX LTR_Gypsy 21173 21571 180 + . . scaffold97 WUBlastX LTR_Gypsy-Cigr 21254 21559 182 + . . scaffold97 WUBlastX LTR_Gypsy 21565 22197 315 + . . scaffold97 WUBlastX LTR_DIRS 27014 27574 167 + . . scaffold97 WUBlastX LTR_DIRS 27400 27639 20 + . . scaffold97 WUBlastX DNA_IS4EU 28894 29406 435 + . . scaffold97 WUBlastX DNA_IS4EU 31332 31610 97 - . . scaffold97 GLEAN promoter 33998 34997 1 + . ID=CGI_10005682; scaffold97 GLEAN mRNA 34998 36679 1 + . ID=CGI_10005682; scaffold97 WUBlastX DNA_Sola 37698 37865 56 + . . scaffold97 WUBlastX DNA_Sola 37767 38957 227 + . . scaffold97 GLEAN promoter 38943 39942 0.312293 + . ID=CGI_10005683; scaffold97 GLEAN mRNA 39943 45417 0.312293 + . ID=CGI_10005683; scaffold97 GLEAN mRNA 40991 41386 1 - . ID=CGI_10005684; scaffold97 TRF Tandem_Repeat 41005 41834 382 + . . scaffold97 TRF Tandem_Repeat 41005 41834 258 + . . scaffold97 TRF Tandem_Repeat 41014 41314 347 + . . scaffold97 GLEAN promoter 41387 42386 1 - . ID=CGI_10005684; scaffold97 GLEAN mRNA 47989 52704 0.999675 - . ID=CGI_10005685; scaffold97 GLEAN promoter 52705 53704 0.999675 - . ID=CGI_10005685; scaffold97 WUBlastX DNA_Kolobok-IS4 54055 54108 23 + . . scaffold97 WUBlastX DNA_Kolobok-IS4 54219 54401 63 + . . scaffold97 WUBlastX DNA_IS4EU 54261 54401 83 + . . scaffold97 WUBlastX DNA_IS4EU 54448 54804 271 + . . scaffold97 WUBlastX DNA_IS4EU 54813 54938 94 + . . scaffold97 WUBlastX DNA_IS4EU 54813 54965 22 + . . scaffold97 TRF Tandem_Repeat 55836 55868 66 + . . scaffold97 TRF Tandem_Repeat 70590 70643 108 + . . scaffold97 GLEAN mRNA 72894 92330 0.60683 - . ID=CGI_10005686; scaffold97 WUBlastX LINE_L1-Tx1 80830 81444 140 + . . scaffold97 WUBlastX LINE_L1-Tx1 81480 81947 127 + . . scaffold97 TRF Tandem_Repeat 82277 82332 112 + . . scaffold97 WUBlastX DNA_IS4EU 88684 88803 21 + . . scaffold97 WUBlastX DNA_IS4EU 88758 89123 145 + . . scaffold97 WUBlastX DNA_IS4EU 90361 90459 35 - . . scaffold97 TRF Tandem_Repeat 91749 91824 50 + . . scaffold97 GLEAN promoter 92331 93330 0.60683 - . ID=CGI_10005686; scaffold97 TRF Tandem_Repeat 93720 93754 61 + . . scaffold97 TRF Tandem_Repeat 93984 94053 72 + . . scaffold97 GLEAN mRNA 94412 98066 0.615205 - . ID=CGI_10005687; scaffold97 TRF Tandem_Repeat 97709 97789 137 + . . scaffold97 GLEAN promoter 98067 99066 0.615205 - . ID=CGI_10005687; scaffold97 WUBlastX LINE_L1-Tx1 100430 102322 569 - . . scaffold97 WUBlastX LINE_L1 102319 104190 839 - . . scaffold97 WUBlastX LINE_L2 104480 104902 91 - . . scaffold97 WUBlastX LINE_L2 105061 105756 123 - . . scaffold97 WUBlastX LINE_L1 105109 105900 50 - . . scaffold97 GLEAN promoter 108076 109075 0.999372 + . ID=CGI_10005688; scaffold97 WUBlastX LINE_CR1 108167 108898 196 + . . scaffold97 GLEAN mRNA 109076 109456 0.999372 + . ID=CGI_10005688; scaffold97 WUBlastX LINE_L1-Tx1 109582 110226 220 + . . scaffold97 WUBlastX LINE_Jockey 110219 110341 20 + . . scaffold97 WUBlastX LINE_L1-Tx1 110270 111268 164 + . . scaffold97 WUBlastX LINE_L1-Tx1 110956 112152 362 + . . scaffold97 WUBlastX DNA_P 114439 114615 26 + . . scaffold97 WUBlastX DNA_P 114734 114919 116 + . . scaffold97 WUBlastX DNA_P 115101 115235 83 + . . scaffold97 WUBlastX DNA_P 115395 115568 113 + . . scaffold97 WUBlastX DNA_P 115678 115893 77 + . . scaffold97 WUBlastX DNA_P 115729 115893 84 + . . scaffold97 WUBlastX DNA_P 115729 115923 59 + . . scaffold97 WUBlastX DNA_P 116040 116186 63 + . . scaffold97 WUBlastX DNA_P 116055 116255 30 + . . scaffold97 WUBlastX DNA_P 116299 116439 62 + . . scaffold97 WUBlastX DNA_P 116323 116430 62 + . . scaffold97 WUBlastX DNA_P 116436 116516 31 + . . scaffold97 WUBlastX DNA_P 116754 116981 45 + . . scaffold97 WUBlastX DNA_P 116760 116891 71 + . . scaffold97 WUBlastX DNA_P 116963 117142 70 + . . scaffold97 WUBlastX DNA_P 117008 117142 104 + . . scaffold97 WUBlastX DNA_P 117820 117966 45 + . . scaffold97 TRF Tandem_Repeat 120755 120842 167 + . . scaffold97 TRF Tandem_Repeat 130992 131017 52 + . . scaffold971 TRF Tandem_Repeat 1079 1205 119 + . . scaffold971 TRF Tandem_Repeat 1079 1181 125 + . . scaffold971 TRF Tandem_Repeat 1079 1181 125 + . . scaffold971 TRF Tandem_Repeat 1079 1181 125 + . . scaffold971 TRF Tandem_Repeat 1079 1205 118 + . . scaffold971 TRF Tandem_Repeat 6626 6673 87 + . . scaffold971 TRF Tandem_Repeat 12653 12685 57 + . . scaffold971 GLEAN promoter 15604 16603 0.450997 + . ID=CGI_10006831; scaffold971 GLEAN mRNA 16604 37431 0.450997 + . ID=CGI_10006831; scaffold971 WUBlastX LINE_L2 20060 20194 49 - . . scaffold971 TRF Tandem_Repeat 32557 32602 92 + . . scaffold971 WUBlastX LTR_Ngaro 48785 49099 30 + . . scaffold971 WUBlastX LTR_Ngaro 49325 50623 278 + . . scaffold971 WUBlastX LTR_Ngaro 49817 50779 375 + . . scaffold971 WUBlastX LTR_Ngaro 49817 50623 378 + . . scaffold971 WUBlastX LTR_Ngaro 50752 51210 54 + . . scaffold971 WUBlastX LTR_Ngaro 51931 52278 86 + . . scaffold971 WUBlastX LTR_Ngaro 52000 52287 89 + . . scaffold971 TRF Tandem_Repeat 56039 56082 70 + . . scaffold971 WUBlastX LTR_Pao 61396 61671 27 + . . scaffold971 WUBlastX LTR_Pao 62076 63305 210 + . . scaffold971 WUBlastX LTR_Pao 62280 63305 232 + . . scaffold971 WUBlastX LTR_Pao 63314 63637 235 + . . scaffold971 WUBlastX LTR_Pao 63329 63715 99 + . . scaffold971 WUBlastX LTR_Pao 63637 63801 52 + . . scaffold971 WUBlastX LTR_Pao 63741 65039 214 + . . scaffold971 WUBlastX LTR_Pao 64914 65075 26 + . . scaffold971 WUBlastX LTR_Pao 65043 65090 22 + . . scaffold971 WUBlastX LTR_Pao 65089 65127 25 + . . scaffold971 WUBlastX LTR_Pao 65124 65249 34 + . . scaffold971 WUBlastX LTR_Pao 65124 65219 35 + . . scaffold971 TRF Tandem_Repeat 66759 67412 785 + . . scaffold971 TRF Tandem_Repeat 71161 71387 173 + . . scaffold971 TRF Tandem_Repeat 74806 74936 109 + . . scaffold971 GLEAN promoter 97701 98700 0.811986 + . ID=CGI_10006832; scaffold971 GLEAN mRNA 98701 111176 0.811986 + . ID=CGI_10006832; scaffold971 GLEAN mRNA 117073 118896 1 - . ID=CGI_10006833; scaffold971 GLEAN promoter 118897 119896 1 - . ID=CGI_10006833; scaffold971 GLEAN mRNA 128075 135251 0.986981 - . ID=CGI_10006834; scaffold971 GLEAN promoter 135252 136251 0.986981 - . ID=CGI_10006834; scaffold971 GLEAN promoter 137250 138249 0.999776 + . ID=CGI_10006835; scaffold971 GLEAN mRNA 138250 148950 0.999776 + . ID=CGI_10006835; scaffold971 TRF Tandem_Repeat 141778 141984 168 + . . scaffold971 TRF Tandem_Repeat 142071 142279 214 + . . scaffold971 GLEAN promoter 149219 150218 1 + . ID=CGI_10006836; scaffold971 GLEAN mRNA 150219 151531 1 + . ID=CGI_10006836; scaffold971 GLEAN promoter 151583 152582 0.999999 + . ID=CGI_10006837; scaffold971 GLEAN mRNA 152583 161442 0.999999 + . ID=CGI_10006837; scaffold971 TRF Tandem_Repeat 158161 158274 140 + . . scaffold971 TRF Tandem_Repeat 159536 159753 184 + . . scaffold971 TRF Tandem_Repeat 159553 159749 163 + . . scaffold973 GLEAN promoter 1 376 1 + . ID=CGI_10021541; scaffold973 GLEAN mRNA 377 8707 1 + . ID=CGI_10021541; scaffold973 TRF Tandem_Repeat 3240 3302 85 + . . scaffold973 TRF Tandem_Repeat 3240 3302 60 + . . scaffold973 TRF Tandem_Repeat 3240 3302 73 + . . scaffold973 TRF Tandem_Repeat 3244 3302 70 + . . scaffold973 TRF Tandem_Repeat 4105 4378 341 + . . scaffold973 GLEAN promoter 12564 13563 1 + . ID=CGI_10021542; scaffold973 TRF Tandem_Repeat 13358 13412 110 + . . scaffold973 GLEAN mRNA 13564 19076 1 + . ID=CGI_10021542; scaffold973 TRF Tandem_Repeat 17867 17898 55 + . . scaffold973 GLEAN promoter 44285 45284 1 + . ID=CGI_10021543; scaffold973 GLEAN mRNA 45285 49667 1 + . ID=CGI_10021543; scaffold973 TRF Tandem_Repeat 45373 45434 124 + . . scaffold973 TRF Tandem_Repeat 46424 46473 100 + . . scaffold973 GLEAN promoter 52720 53719 1 + . ID=CGI_10021544; scaffold973 GLEAN mRNA 53720 58266 1 + . ID=CGI_10021544; scaffold973 TRF Tandem_Repeat 53825 53867 86 + . . scaffold973 TRF Tandem_Repeat 54856 54901 92 + . . scaffold973 TRF Tandem_Repeat 59490 59679 195 + . . scaffold973 GLEAN promoter 59620 60619 0.99033 + . ID=CGI_10021545; scaffold973 GLEAN mRNA 60620 66385 0.99033 + . ID=CGI_10021545; scaffold973 TRF Tandem_Repeat 63318 63347 60 + . . scaffold973 TRF Tandem_Repeat 64669 64712 88 + . . scaffold973 TRF Tandem_Repeat 70524 70558 70 + . . scaffold973 TRF Tandem_Repeat 73108 73175 136 + . . scaffold973 GLEAN promoter 73116 74115 0.999527 + . ID=CGI_10021546; scaffold973 GLEAN mRNA 74116 86116 0.999527 + . ID=CGI_10021546; scaffold973 TRF Tandem_Repeat 76814 76843 60 + . . scaffold973 TRF Tandem_Repeat 78165 78212 96 + . . scaffold973 TRF Tandem_Repeat 88941 88982 84 + . . scaffold973 TRF Tandem_Repeat 89008 89062 110 + . . scaffold973 TRF Tandem_Repeat 90750 90791 84 + . . scaffold973 TRF Tandem_Repeat 93343 93551 188 + . . scaffold973 GLEAN promoter 96608 97607 1 + . ID=CGI_10021547; scaffold973 GLEAN mRNA 97608 103800 1 + . ID=CGI_10021547; scaffold973 TRF Tandem_Repeat 104503 104530 56 + . . scaffold973 TRF Tandem_Repeat 107376 107472 194 + . . scaffold973 WUBlastX LINE_RTE-X 111634 112071 25 - . . scaffold973 WUBlastX LINE_RTE-X 111844 112059 57 - . . scaffold973 TRF Tandem_Repeat 115591 115619 58 + . . scaffold973 TRF Tandem_Repeat 116346 116402 114 + . . scaffold973 GLEAN mRNA 116868 124937 1 - . ID=CGI_10021548; scaffold973 TRF Tandem_Repeat 119489 119539 102 + . . scaffold973 TRF Tandem_Repeat 124069 124118 100 + . . scaffold973 GLEAN promoter 124938 125937 1 - . ID=CGI_10021548; scaffold973 GLEAN mRNA 127922 139230 0.516856 - . ID=CGI_10021549; scaffold973 TRF Tandem_Repeat 134904 135152 257 + . . scaffold973 TRF Tandem_Repeat 138471 138504 68 + . . scaffold973 GLEAN promoter 139231 140230 0.516856 - . ID=CGI_10021549; scaffold973 TRF Tandem_Repeat 144233 144334 147 + . . scaffold973 TRF Tandem_Repeat 145051 145081 62 + . . scaffold973 TRF Tandem_Repeat 145990 146045 112 + . . scaffold973 TRF Tandem_Repeat 146241 146281 82 + . . scaffold973 TRF Tandem_Repeat 149930 149976 67 + . . scaffold973 GLEAN mRNA 149992 152820 0.99991 - . ID=CGI_10021550; scaffold973 GLEAN promoter 152821 153820 0.99991 - . ID=CGI_10021550; scaffold973 GLEAN promoter 156124 157123 0.888925 + . ID=CGI_10021551; scaffold973 GLEAN mRNA 157124 169546 0.888925 + . ID=CGI_10021551; scaffold973 TRF Tandem_Repeat 168660 168700 82 + . . scaffold973 TRF Tandem_Repeat 196287 196347 113 + . . scaffold973 WUBlastX LTR_Pao 202862 203215 54 + . . scaffold973 TRF Tandem_Repeat 206166 206219 81 + . . scaffold973 WUBlastX LTR_Pao 207021 207233 65 + . . scaffold973 WUBlastX LTR_Pao 207024 207176 82 + . . scaffold973 TRF Tandem_Repeat 208822 208881 120 + . . scaffold973 TRF Tandem_Repeat 213702 214078 164 + . . scaffold973 TRF Tandem_Repeat 215126 215770 434 + . . scaffold973 WUBlastX LTR_Gypsy 216463 216795 77 - . . scaffold973 WUBlastX LTR_Gypsy 216523 216864 99 - . . scaffold973 WUBlastX LTR_Gypsy 216577 217116 116 - . . scaffold973 WUBlastX LTR_Gypsy 216770 217420 205 - . . scaffold973 WUBlastX LTR_Gypsy-Cigr 216860 217411 329 - . . scaffold973 WUBlastX LTR_Gypsy 217611 217922 28 - . . scaffold973 WUBlastX LTR_Gypsy 217611 217799 47 - . . scaffold973 WUBlastX LTR_Gypsy 217901 218200 75 - . . scaffold973 WUBlastX LTR_Gypsy 217988 218392 77 - . . scaffold973 WUBlastX LTR_Gypsy 217988 218200 118 - . . scaffold973 WUBlastX LTR_Gypsy 218134 218322 100 - . . scaffold973 WUBlastX LTR_Gypsy 218182 218448 45 - . . scaffold973 TRF Tandem_Repeat 218452 218629 121 + . . scaffold973 WUBlastX LTR_Gypsy 222958 223956 238 - . . scaffold973 WUBlastX LTR_Gypsy 223192 223977 374 - . . scaffold973 WUBlastX LTR_Gypsy 223980 224282 209 - . . scaffold973 WUBlastX LTR_Gypsy 224276 224977 494 - . . scaffold973 WUBlastX LTR_Gypsy 224980 225201 23 - . . scaffold973 WUBlastX LTR_Gypsy 224986 225132 94 - . . scaffold973 WUBlastX LTR_Gypsy 224992 225168 57 - . . scaffold973 WUBlastX LTR_DIRS 225425 226357 278 - . . scaffold973 WUBlastX LTR_DIRS 226353 227123 282 - . . scaffold973 WUBlastX LTR_DIRS 226572 227228 246 - . . scaffold973 WUBlastX LTR_DIRS 227087 227593 127 - . . scaffold973 WUBlastX LTR_DIRS 227760 227891 25 - . . scaffold973 WUBlastX LTR_DIRS 227890 228327 33 - . . scaffold973 WUBlastX LTR_DIRS 227896 228567 32 - . . scaffold973 WUBlastX LTR_Gypsy 229219 229701 110 - . . scaffold973 WUBlastX LTR_Gypsy 229330 229710 294 - . . scaffold973 WUBlastX LTR_Gypsy 229336 229812 104 - . . scaffold973 WUBlastX LTR_Gypsy 229820 229966 32 - . . scaffold973 WUBlastX LTR_Gypsy 229844 230236 42 - . . scaffold973 WUBlastX LTR_Gypsy 229847 229969 64 - . . scaffold973 WUBlastX LTR_Gypsy 229989 230189 48 - . . scaffold973 TRF Tandem_Repeat 235489 235534 67 + . . scaffold973 TRF Tandem_Repeat 239675 239712 60 + . . scaffold973 TRF Tandem_Repeat 239996 241503 1684 + . . scaffold973 TRF Tandem_Repeat 239997 241410 1860 + . . scaffold973 WUBlastX LTR_Gypsy 254313 254486 37 - . . scaffold973 WUBlastX LTR_Gypsy 254343 254567 52 - . . scaffold973 WUBlastX LTR_Gypsy 254343 254516 64 - . . scaffold973 WUBlastX LTR_Gypsy 254918 255358 382 - . . scaffold973 WUBlastX LTR_Gypsy-Cigr 255352 255618 176 - . . scaffold973 WUBlastX LTR_Gypsy 255448 255660 36 - . . scaffold973 WUBlastX LINE_RTE-BovB 256474 257235 182 + . . scaffold973 WUBlastX LINE_RTE-BovB 257255 257425 68 + . . scaffold973 WUBlastX LINE_RTE-BovB 257348 258307 84 + . . scaffold973 TRF Tandem_Repeat 257426 257471 92 + . . scaffold973 WUBlastX LINE_RTE-BovB 257542 257751 116 + . . scaffold973 WUBlastX LINE_RTE-BovB 257978 258307 102 + . . scaffold973 WUBlastX LINE_RTE-BovB 258334 258621 64 + . . scaffold973 WUBlastX LINE_RTE-BovB 258609 258683 31 + . . scaffold973 TRF Tandem_Repeat 275237 275275 60 + . . scaffold973 TRF Tandem_Repeat 294514 294754 173 + . . scaffold973 TRF Tandem_Repeat 295585 295791 157 + . . scaffold973 WUBlastX LINE_RTE-BovB 297165 297326 32 + . . scaffold973 WUBlastX LINE_RTE-BovB 297192 297326 45 + . . scaffold973 WUBlastX LINE_RTE-BovB 297558 297767 55 + . . scaffold973 WUBlastX LTR_Gypsy 300730 300768 20 + . . scaffold973 WUBlastX LTR_ERV1 301425 301580 49 + . . scaffold973 WUBlastX LTR_Gypsy 301452 301628 136 + . . scaffold973 WUBlastX LTR_Gypsy 301452 301667 128 + . . scaffold973 WUBlastX LTR_Gypsy 301604 301762 84 + . . scaffold973 WUBlastX LTR_Gypsy 301756 301902 96 + . . scaffold973 WUBlastX LTR_Gypsy 301777 301899 111 + . . scaffold973 WUBlastX LTR_Gypsy 301958 302407 110 + . . scaffold973 WUBlastX LTR_Gypsy 301982 302326 150 + . . scaffold973 WUBlastX LTR_Gypsy 302378 302944 169 + . . scaffold973 WUBlastX LTR_Gypsy 302568 303860 516 + . . scaffold973 WUBlastX LTR_Gypsy 303474 303932 202 + . . scaffold973 WUBlastX LTR_Gypsy 303925 304056 77 + . . scaffold973 WUBlastX LTR_Gypsy 303928 304089 71 + . . scaffold973 WUBlastX DNA_TcMar-Fot1 316246 316608 67 + . . scaffold973 WUBlastX LTR_Gypsy 317679 317726 20 - . . scaffold973 WUBlastX LTR_Gypsy 317975 318109 28 - . . scaffold973 WUBlastX LTR_Gypsy 318050 318109 40 - . . scaffold973 WUBlastX LTR_Gypsy 318093 318626 295 - . . scaffold973 WUBlastX LTR_Gypsy 318099 318725 121 - . . scaffold973 WUBlastX LTR_Gypsy 318602 318790 38 - . . scaffold973 WUBlastX LTR_Gypsy 318605 318748 59 - . . scaffold973 WUBlastX LTR_Gypsy 319210 319602 147 - . . scaffold973 WUBlastX LTR_Gypsy-Cigr 319297 319590 208 - . . scaffold973 WUBlastX LTR_Gypsy 319324 319659 130 - . . scaffold973 WUBlastX LTR_Gypsy 319342 319782 75 - . . scaffold973 WUBlastX LTR_Gypsy 319739 319918 39 - . . scaffold973 WUBlastX LTR_Gypsy 319908 320156 34 - . . scaffold973 WUBlastX LTR_Gypsy 320025 320198 36 - . . scaffold973 WUBlastX LTR_Gypsy 320406 320561 43 - . . scaffold973 WUBlastX LTR_Gypsy 320409 320597 30 - . . scaffold973 WUBlastX LTR_Gypsy 320546 320623 29 - . . scaffold973 TRF Tandem_Repeat 328791 328823 57 + . . scaffold973 TRF Tandem_Repeat 329129 329197 93 + . . scaffold973 TRF Tandem_Repeat 333190 333254 121 + . . scaffold973 WUBlastX LTR_Copia 340741 341016 28 - . . scaffold973 WUBlastX LTR_Gypsy 340789 341613 298 - . . scaffold973 WUBlastX LTR_Gypsy-Cigr 340921 341589 416 - . . scaffold973 WUBlastX LTR_Gypsy 341592 341999 311 - . . scaffold973 WUBlastX LTR_Gypsy 341859 343031 569 - . . scaffold973 WUBlastX LTR_Gypsy-Cigr 342090 343280 855 - . . scaffold973 WUBlastX LTR_Gypsy 343122 343361 37 - . . scaffold973 WUBlastX LTR_Gypsy 343337 344896 76 - . . scaffold973 WUBlastX LTR_Gypsy 343424 343837 98 - . . scaffold973 WUBlastX LTR_Gypsy-Cigr 343898 344644 183 - . . scaffold973 TRF Tandem_Repeat 347832 350320 1646 + . . scaffold973 TRF Tandem_Repeat 348196 350320 2241 + . . scaffold973 TRF Tandem_Repeat 348196 350320 2241 + . . scaffold973 GLEAN mRNA 354440 370851 0.648316 - . ID=CGI_10021552; scaffold973 TRF Tandem_Repeat 364234 364400 271 + . . scaffold973 TRF Tandem_Repeat 364270 364423 159 + . . scaffold973 TRF Tandem_Repeat 368568 368615 78 + . . scaffold973 GLEAN promoter 370852 371851 0.648316 - . ID=CGI_10021552; scaffold973 GLEAN mRNA 371182 375858 1 - . ID=CGI_10021553; scaffold973 TRF Tandem_Repeat 372350 372782 496 + . . scaffold973 GLEAN promoter 375859 376858 1 - . ID=CGI_10021553; scaffold973 TRF Tandem_Repeat 378421 378466 56 + . . scaffold973 WUBlastX DNA_TcMar-Tc1 391491 391904 56 - . . scaffold973 WUBlastX DNA_TcMar-Tc1 391563 392033 79 - . . scaffold973 WUBlastX DNA_TcMar-Tc1 392006 392539 58 - . . scaffold973 TRF Tandem_Repeat 401935 402675 1097 + . . scaffold973 TRF Tandem_Repeat 403891 404327 365 + . . scaffold973 TRF Tandem_Repeat 404172 404305 124 + . . scaffold973 TRF Tandem_Repeat 408596 408979 587 + . . scaffold973 TRF Tandem_Repeat 408596 409266 663 + . . scaffold973 TRF Tandem_Repeat 409269 409542 279 + . . scaffold973 GLEAN mRNA 413203 418232 0.999985 - . ID=CGI_10021554; scaffold973 TRF Tandem_Repeat 416618 416881 428 + . . scaffold973 GLEAN promoter 418233 419232 0.999985 - . ID=CGI_10021554; scaffold973 GLEAN promoter 420705 421704 1 + . ID=CGI_10021555; scaffold973 GLEAN mRNA 421705 421989 1 + . ID=CGI_10021555; scaffold973 TRF Tandem_Repeat 432693 432747 110 + . . scaffold973 TRF Tandem_Repeat 439642 440003 670 + . . scaffold973 GLEAN promoter 453508 454507 0.99514 + . ID=CGI_10021556; scaffold973 GLEAN mRNA 454508 454915 0.99514 + . ID=CGI_10021556; scaffold973 GLEAN mRNA 459812 495219 0.606957 - . ID=CGI_10021557; scaffold973 TRF Tandem_Repeat 460858 461240 568 + . . scaffold973 TRF Tandem_Repeat 467816 468224 287 + . . scaffold973 TRF Tandem_Repeat 467842 468274 166 + . . scaffold973 TRF Tandem_Repeat 471653 472565 1419 + . . scaffold973 GLEAN promoter 472728 473727 0.999372 + . ID=CGI_10021558; scaffold973 TRF Tandem_Repeat 472735 472776 68 + . . scaffold973 TRF Tandem_Repeat 472739 472781 54 + . . scaffold973 GLEAN mRNA 473728 473955 0.999372 + . ID=CGI_10021558; scaffold973 WUBlastX DNA_IS4EU 480001 480165 118 + . . scaffold973 WUBlastX DNA_P 480774 480989 24 + . . scaffold973 WUBlastX DNA_P 480774 480944 34 + . . scaffold973 WUBlastX DNA_Kolobok-IS4 481620 482351 426 + . . scaffold973 WUBlastX DNA_IS4EU 482321 482617 207 + . . scaffold973 WUBlastX DNA_IS4EU 482976 483332 163 - . . scaffold973 WUBlastX DNA_IS4EU 483756 484178 114 - . . scaffold973 WUBlastX DNA_IS4EU 484446 484655 26 - . . scaffold973 WUBlastX DNA_IS4EU 484449 484619 76 - . . scaffold973 WUBlastX DNA_IS4EU 484809 484901 56 - . . scaffold973 WUBlastX DNA_IS4EU 485240 485359 29 - . . scaffold973 GLEAN promoter 495220 496219 0.606957 - . ID=CGI_10021557; scaffold973 TRF Tandem_Repeat 505760 506178 716 + . . scaffold973 GLEAN promoter 506786 507785 0.573543 + . ID=CGI_10021559; scaffold973 TRF Tandem_Repeat 507203 507757 894 + . . scaffold973 GLEAN mRNA 507786 508055 0.573543 + . ID=CGI_10021559; scaffold973 TRF Tandem_Repeat 518305 518347 86 + . . scaffold973 TRF Tandem_Repeat 520478 520528 102 + . . scaffold973 GLEAN mRNA 534107 541261 1 - . ID=CGI_10021560; scaffold973 GLEAN promoter 541262 542261 1 - . ID=CGI_10021560; scaffold973 GLEAN mRNA 542500 551415 1 - . ID=CGI_10021561; scaffold973 GLEAN promoter 551416 552415 1 - . ID=CGI_10021561; scaffold973 GLEAN mRNA 557855 607292 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 560780 560869 65 + . . scaffold973 TRF Tandem_Repeat 562975 563061 104 + . . scaffold973 TRF Tandem_Repeat 567976 568269 241 + . . scaffold973 TRF Tandem_Repeat 568274 568883 438 + . . scaffold973 TRF Tandem_Repeat 590269 591087 1088 + . . scaffold973 TRF Tandem_Repeat 593440 593781 157 + . . scaffold973 TRF Tandem_Repeat 598649 598695 85 + . . scaffold973 TRF Tandem_Repeat 602501 602711 377 + . . scaffold973 TRF Tandem_Repeat 602945 603072 84 + . . scaffold973 TRF Tandem_Repeat 603362 603614 427 + . . scaffold973 GLEAN promoter 607293 608292 0.441011 - . ID=CGI_10021562; scaffold973 TRF Tandem_Repeat 607930 607965 54 + . . scaffold973 TRF Tandem_Repeat 609120 609226 115 + . . scaffold973 GLEAN mRNA 610551 648341 0.909698 - . ID=CGI_10021563; scaffold973 TRF Tandem_Repeat 622522 622569 51 + . . scaffold973 TRF Tandem_Repeat 622525 622569 72 + . . scaffold973 TRF Tandem_Repeat 623269 623315 94 + . . scaffold973 TRF Tandem_Repeat 633657 633718 115 + . . scaffold973 TRF Tandem_Repeat 640222 640881 938 + . . scaffold973 GLEAN promoter 648342 649341 0.909698 - . ID=CGI_10021563; scaffold973 GLEAN promoter 648668 649667 0.712609 + . ID=CGI_10021564; scaffold973 GLEAN mRNA 649668 651821 0.712609 + . ID=CGI_10021564; scaffold973 TRF Tandem_Repeat 657592 657625 61 + . . scaffold973 TRF Tandem_Repeat 664648 665034 407 + . . scaffold973 TRF Tandem_Repeat 664653 665034 470 + . . scaffold973 WUBlastX LTR_Gypsy 665743 667158 652 - . . scaffold973 WUBlastX LINE_L1-Tx1 670189 670740 45 + . . scaffold973 WUBlastX LINE_L1-Tx1 670213 670665 56 + . . scaffold973 TRF Tandem_Repeat 676590 676694 192 + . . scaffold973 WUBlastX LINE_RTE-BovB 676723 676767 21 - . . scaffold973 WUBlastX LINE_CR1 677051 677101 21 - . . scaffold973 WUBlastX LINE_RTE-BovB 677075 677692 214 - . . scaffold973 WUBlastX LINE_RTE-BovB 677171 677692 270 - . . scaffold973 WUBlastX LINE_RTE-BovB 677707 678558 331 - . . scaffold973 WUBlastX LINE_L2 678478 678615 31 - . . scaffold973 WUBlastX LINE_RTE-BovB 678484 678573 49 - . . scaffold973 WUBlastX LINE_RTE-BovB 678573 678656 30 - . . scaffold973 WUBlastX DNA_Kolobok-IS4 691253 691552 23 + . . scaffold973 WUBlastX DNA_IS4EU 691400 691552 47 + . . scaffold973 WUBlastX LINE_Penelope 693700 693987 53 + . . scaffold973 WUBlastX LINE_Penelope 693736 694038 32 + . . scaffold973 WUBlastX LINE_Penelope 694109 694240 21 + . . scaffold975 GLEAN promoter 10385 11384 1 + . ID=CGI_10013311; scaffold975 GLEAN mRNA 11385 12978 1 + . ID=CGI_10013311; scaffold975 GLEAN mRNA 16421 18958 0.889871 - . ID=CGI_10013312; scaffold975 GLEAN promoter 18959 19958 0.889871 - . ID=CGI_10013312; scaffold975 WUBlastX LINE_CR1-L2 21339 21554 21 + . . scaffold975 TRF Tandem_Repeat 24426 24499 148 + . . scaffold975 TRF Tandem_Repeat 26102 26175 67 + . . scaffold975 GLEAN promoter 27766 28765 0.839317 + . ID=CGI_10013313; scaffold975 GLEAN mRNA 28766 34937 0.839317 + . ID=CGI_10013313; scaffold975 TRF Tandem_Repeat 29903 29958 103 + . . scaffold975 TRF Tandem_Repeat 34610 34665 103 + . . scaffold975 GLEAN mRNA 37716 47437 0.999743 - . ID=CGI_10013314; scaffold975 WUBlastX DNA_TcMar-Tc1 41290 42291 417 - . . scaffold975 GLEAN promoter 45227 46226 1 + . ID=CGI_10013315; scaffold975 GLEAN mRNA 46227 48292 1 + . ID=CGI_10013315; scaffold975 GLEAN promoter 47438 48437 0.999743 - . ID=CGI_10013314; scaffold975 TRF Tandem_Repeat 49717 49789 146 + . . scaffold975 GLEAN promoter 58012 59011 0.548351 + . ID=CGI_10013316; scaffold975 TRF Tandem_Repeat 58568 58971 754 + . . scaffold975 GLEAN mRNA 59012 59359 0.548351 + . ID=CGI_10013316; scaffold975 GLEAN promoter 60043 61042 0.705916 + . ID=CGI_10013317; scaffold975 GLEAN mRNA 61043 66930 0.705916 + . ID=CGI_10013317; scaffold975 GLEAN mRNA 68099 75708 0.999415 - . ID=CGI_10013318; scaffold975 GLEAN promoter 75709 76708 0.999415 - . ID=CGI_10013318; scaffold975 GLEAN promoter 82644 83643 0.889923 + . ID=CGI_10013319; scaffold975 GLEAN mRNA 83644 87532 0.889923 + . ID=CGI_10013319; scaffold975 GLEAN promoter 87311 88310 0.999129 + . ID=CGI_10013320; scaffold975 GLEAN mRNA 88311 91068 0.999129 + . ID=CGI_10013320; scaffold975 TRF Tandem_Repeat 92066 93491 1480 + . . scaffold975 GLEAN mRNA 94623 98913 1 - . ID=CGI_10013321; scaffold975 GLEAN promoter 98914 99913 1 - . ID=CGI_10013321; scaffold975 TRF Tandem_Repeat 100758 100803 92 + . . scaffold975 TRF Tandem_Repeat 100801 100873 146 + . . scaffold975 GLEAN promoter 101475 102474 1 + . ID=CGI_10013322; scaffold975 GLEAN mRNA 102475 106536 1 + . ID=CGI_10013322; scaffold975 GLEAN mRNA 108133 111476 0.988107 - . ID=CGI_10013323; scaffold975 GLEAN promoter 111477 112476 0.988107 - . ID=CGI_10013323; scaffold975 TRF Tandem_Repeat 111779 111832 108 + . . scaffold975 GLEAN promoter 118455 119454 0.998624 + . ID=CGI_10013324; scaffold975 GLEAN mRNA 119455 121505 0.998624 + . ID=CGI_10013324; scaffold975 GLEAN mRNA 123992 132770 1 - . ID=CGI_10013325; scaffold975 WUBlastX LINE_RTE-BovB 129876 129941 26 + . . scaffold975 WUBlastX LINE_RTE-BovB 129941 130039 37 + . . scaffold975 WUBlastX LINE_RTE-BovB 130099 130743 90 + . . scaffold975 WUBlastX LINE_RTE-BovB 130246 130725 165 + . . scaffold975 WUBlastX LINE_RTE-BovB 130719 130889 32 + . . scaffold975 TRF Tandem_Repeat 131259 131290 55 + . . scaffold975 GLEAN promoter 132771 133770 1 - . ID=CGI_10013325; scaffold975 GLEAN mRNA 134869 145352 0.999991 - . ID=CGI_10013326; scaffold975 TRF Tandem_Repeat 137467 137532 132 + . . scaffold975 TRF Tandem_Repeat 142020 142074 101 + . . scaffold975 TRF Tandem_Repeat 142153 142200 96 + . . scaffold975 GLEAN promoter 145353 146352 0.999991 - . ID=CGI_10013326; scaffold975 TRF Tandem_Repeat 146920 146944 50 + . . scaffold975 TRF Tandem_Repeat 146944 146977 50 + . . scaffold975 TRF Tandem_Repeat 148256 148290 70 + . . scaffold975 TRF Tandem_Repeat 149515 149544 60 + . . scaffold975 TRF Tandem_Repeat 150039 150105 89 + . . scaffold975 GLEAN promoter 152460 153459 1 + . ID=CGI_10013327; scaffold975 GLEAN mRNA 153460 181448 1 + . ID=CGI_10013327; scaffold975 TRF Tandem_Repeat 156015 156061 94 + . . scaffold975 TRF Tandem_Repeat 182998 183031 50 + . . scaffold975 GLEAN promoter 183103 184102 0.405911 + . ID=CGI_10013328; scaffold975 GLEAN mRNA 184103 214991 0.405911 + . ID=CGI_10013328; scaffold975 TRF Tandem_Repeat 184422 184475 108 + . . scaffold975 TRF Tandem_Repeat 195965 196072 64 + . . scaffold975 WUBlastX LINE_CR1-L2 225119 225313 110 - . . scaffold975 WUBlastX LINE_L2 225303 226166 162 - . . scaffold975 WUBlastX LINE_CR1-L2 225453 226550 192 - . . scaffold975 WUBlastX LINE_L2 225456 226148 282 - . . scaffold975 GLEAN mRNA 241213 250600 0.499805 - . ID=CGI_10013329; scaffold975 WUBlastX LINE_L1-Tx1 243766 243948 42 - . . scaffold975 WUBlastX LINE_L1 244664 245032 62 - . . scaffold975 WUBlastX LINE_L1-Tx1 244709 244951 72 - . . scaffold975 GLEAN promoter 250601 251600 0.499805 - . ID=CGI_10013329; scaffold975 WUBlastX LTR_Ngaro 251729 252508 176 + . . scaffold975 WUBlastX LTR_Ngaro 251861 252508 219 + . . scaffold975 WUBlastX LTR_Ngaro 251972 252745 109 + . . scaffold975 WUBlastX LTR_Ngaro 252107 252598 216 + . . scaffold975 WUBlastX LTR_Ngaro 252717 252941 56 + . . scaffold975 TRF Tandem_Repeat 257647 257696 93 + . . scaffold975 TRF Tandem_Repeat 269859 269900 84 + . . scaffold975 TRF Tandem_Repeat 271366 271405 80 + . . scaffold975 TRF Tandem_Repeat 283322 283364 86 + . . scaffold975 WUBlastX LTR_Gypsy 286628 287221 48 + . . scaffold975 WUBlastX LTR_Gypsy 286745 287320 179 + . . scaffold975 WUBlastX LTR_Copia 287072 287365 62 + . . scaffold975 WUBlastX LTR_Gypsy 287975 288178 64 + . . scaffold975 TRF Tandem_Repeat 289022 290165 680 + . . scaffold975 WUBlastX DNA_NOF 292408 293013 110 - . . scaffold975 WUBlastX DNA_NOF 292947 293426 92 - . . scaffold975 WUBlastX DNA_NOF 293025 293549 39 - . . scaffold975 WUBlastX DNA_NOF 293408 293623 36 - . . scaffold975 WUBlastX LINE_RTE-X 297233 297646 114 + . . scaffold975 WUBlastX LINE_RTE-X 298199 298276 22 + . . scaffold975 WUBlastX LINE_RTE-X 298513 298629 39 + . . scaffold975 WUBlastX LINE_RTE-X 298513 298653 20 + . . scaffold975 GLEAN mRNA 302130 303354 0.999938 - . ID=CGI_10013330; scaffold975 GLEAN promoter 303355 304354 0.999938 - . ID=CGI_10013330; scaffold975 TRF Tandem_Repeat 307435 307469 52 + . . scaffold975 WUBlastX LINE_L1 309333 309698 40 - . . scaffold975 WUBlastX DNA_TcMar-Tc1 312292 312384 24 + . . scaffold975 WUBlastX DNA_TcMar-Tc1 312343 312726 105 + . . scaffold975 WUBlastX DNA_TcMar-Tc1 312594 313283 115 + . . scaffold975 WUBlastX DNA_TcMar-Tc1 312732 313283 344 + . . scaffold975 TRF Tandem_Repeat 322644 322693 84 + . . scaffold975 GLEAN mRNA 328761 331060 1 - . ID=CGI_10013331; scaffold975 TRF Tandem_Repeat 329938 329987 73 + . . scaffold975 GLEAN promoter 331061 332060 1 - . ID=CGI_10013331; scaffold975 TRF Tandem_Repeat 334561 334599 69 + . . scaffold975 GLEAN mRNA 336016 336974 0.999669 - . ID=CGI_10013332; scaffold975 GLEAN promoter 336975 337974 0.999669 - . ID=CGI_10013332; scaffold975 TRF Tandem_Repeat 345644 345673 51 + . . scaffold975 WUBlastX LTR_DIRS 349065 349229 45 - . . scaffold975 WUBlastX LTR_DIRS 349372 349764 101 - . . scaffold975 WUBlastX LTR_DIRS 349444 349854 134 - . . scaffold976 WUBlastX LTR_Pao 945 1133 23 + . . scaffold976 WUBlastX LTR_Pao 1815 2108 20 + . . scaffold976 WUBlastX LTR_Pao 1968 2108 53 + . . scaffold976 WUBlastX LTR_Pao 2104 4224 1283 + . . scaffold976 WUBlastX LTR_Pao 4215 4850 553 + . . scaffold976 WUBlastX LTR_Pao 4811 5266 195 + . . scaffold976 WUBlastX LTR_Pao 5266 6240 869 + . . scaffold976 WUBlastX LTR_Pao 6314 6661 162 + . . scaffold976 WUBlastX LTR_Pao 6419 6658 170 + . . scaffold976 TRF Tandem_Repeat 8257 8282 52 + . . scaffold976 TRF Tandem_Repeat 37507 37542 72 + . . scaffold976 WUBlastX DNA_TcMar-Tc1 37673 38194 155 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 38104 38268 69 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 38104 38388 50 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 38334 38708 52 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 38442 38714 133 - . . scaffold976 GLEAN mRNA 40652 60127 0.884558 - . ID=CGI_10014002; scaffold976 WUBlastX LTR_Gypsy-Cigr 41451 42443 524 - . . scaffold976 WUBlastX LTR_Gypsy-Cigr 42410 42889 209 - . . scaffold976 WUBlastX LTR_Gypsy 42888 43376 24 - . . scaffold976 WUBlastX LTR_Gypsy-Cigr 42972 43538 160 - . . scaffold976 WUBlastX LTR_Gypsy 43116 43628 67 - . . scaffold976 WUBlastX LTR_Gypsy 43785 43937 27 - . . scaffold976 WUBlastX LTR_Pao 46363 46794 209 - . . scaffold976 WUBlastX LTR_Pao 46375 46992 147 - . . scaffold976 WUBlastX LTR_Pao 46735 47061 42 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 49263 49634 99 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 49413 49634 132 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 49658 50002 51 - . . scaffold976 TRF Tandem_Repeat 50442 50477 72 + . . scaffold976 TRF Tandem_Repeat 51860 51912 106 + . . scaffold976 WUBlastX LTR_Gypsy 54923 55180 43 + . . scaffold976 WUBlastX LTR_Gypsy 54977 56803 1099 + . . scaffold976 WUBlastX LTR_Gypsy 56797 58854 1634 + . . scaffold976 GLEAN promoter 60128 61127 0.884558 - . ID=CGI_10014002; scaffold976 GLEAN mRNA 62400 63172 1 - . ID=CGI_10014003; scaffold976 GLEAN promoter 63173 64172 1 - . ID=CGI_10014003; scaffold976 GLEAN mRNA 78851 87402 1 - . ID=CGI_10014004; scaffold976 TRF Tandem_Repeat 84330 84370 55 + . . scaffold976 GLEAN promoter 87403 88402 1 - . ID=CGI_10014004; scaffold976 TRF Tandem_Repeat 89154 89239 163 + . . scaffold976 GLEAN promoter 91186 92185 0.801532 + . ID=CGI_10014005; scaffold976 GLEAN mRNA 92186 97659 0.801532 + . ID=CGI_10014005; scaffold976 TRF Tandem_Repeat 93596 93631 72 + . . scaffold976 TRF Tandem_Repeat 94360 94487 202 + . . scaffold976 TRF Tandem_Repeat 98615 98649 70 + . . scaffold976 GLEAN promoter 99649 100648 0.999949 + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 99879 99945 134 + . . scaffold976 GLEAN mRNA 100649 120076 0.999949 + . ID=CGI_10014006; scaffold976 TRF Tandem_Repeat 107265 107344 74 + . . scaffold976 TRF Tandem_Repeat 108177 109195 1262 + . . scaffold976 TRF Tandem_Repeat 108177 108768 979 + . . scaffold976 TRF Tandem_Repeat 108177 109195 1270 + . . scaffold976 TRF Tandem_Repeat 108772 109195 431 + . . scaffold976 TRF Tandem_Repeat 108775 109196 200 + . . scaffold976 WUBlastX LINE_L1-Tx1 116726 117409 426 + . . scaffold976 WUBlastX LINE_L2 117952 118179 24 + . . scaffold976 GLEAN promoter 120565 121564 1 + . ID=CGI_10014007; scaffold976 GLEAN mRNA 121565 136424 1 + . ID=CGI_10014007; scaffold976 GLEAN promoter 142494 143493 0.999658 + . ID=CGI_10014008; scaffold976 GLEAN mRNA 143494 144981 0.999658 + . ID=CGI_10014008; scaffold976 TRF Tandem_Repeat 150072 150097 52 + . . scaffold976 GLEAN mRNA 150307 153906 0.535426 - . ID=CGI_10014009; scaffold976 GLEAN promoter 153907 154906 0.535426 - . ID=CGI_10014009; scaffold976 TRF Tandem_Repeat 160298 160357 120 + . . scaffold976 GLEAN promoter 161144 162143 1 + . ID=CGI_10014010; scaffold976 GLEAN mRNA 162144 164381 1 + . ID=CGI_10014010; scaffold976 WUBlastX LINE_RTE-X 165741 166013 115 + . . scaffold976 WUBlastX LINE_RTE-X 165964 166131 76 + . . scaffold976 WUBlastX LINE_RTE-X 165982 166209 48 + . . scaffold976 WUBlastX LINE_RTE-X 166213 166635 109 + . . scaffold976 WUBlastX LINE_RTE-X 166234 166749 65 + . . scaffold976 TRF Tandem_Repeat 166821 166883 126 + . . scaffold976 GLEAN promoter 168357 169356 0.999957 + . ID=CGI_10014011; scaffold976 GLEAN mRNA 169357 171629 0.999957 + . ID=CGI_10014011; scaffold976 TRF Tandem_Repeat 177023 177060 76 + . . scaffold976 TRF Tandem_Repeat 177326 177531 222 + . . scaffold976 TRF Tandem_Repeat 180392 180430 78 + . . scaffold976 TRF Tandem_Repeat 189024 189059 54 + . . scaffold976 TRF Tandem_Repeat 191546 191591 92 + . . scaffold976 GLEAN promoter 195360 196359 1 + . ID=CGI_10014012; scaffold976 GLEAN mRNA 196360 197202 1 + . ID=CGI_10014012; scaffold976 TRF Tandem_Repeat 198643 200279 2199 + . . scaffold976 TRF Tandem_Repeat 198643 200279 1742 + . . scaffold976 TRF Tandem_Repeat 198643 200279 2199 + . . scaffold976 TRF Tandem_Repeat 201834 201888 110 + . . scaffold976 TRF Tandem_Repeat 240104 240162 118 + . . scaffold976 GLEAN mRNA 251066 251992 0.987258 - . ID=CGI_10014013; scaffold976 GLEAN promoter 251993 252992 0.987258 - . ID=CGI_10014013; scaffold976 GLEAN promoter 265197 266196 0.702349 + . ID=CGI_10014014; scaffold976 TRF Tandem_Repeat 265830 265964 101 + . . scaffold976 GLEAN mRNA 266197 282153 0.702349 + . ID=CGI_10014014; scaffold976 WUBlastX DNA_Harbinger 275067 275342 93 + . . scaffold976 WUBlastX DNA_Harbinger 275067 275273 122 + . . scaffold976 WUBlastX DNA_Harbinger 275319 275369 28 + . . scaffold976 TRF Tandem_Repeat 276146 276179 50 + . . scaffold976 WUBlastX DNA_TcMar-Tc2 284900 285181 76 - . . scaffold976 WUBlastX DNA_TcMar-Tc2 284939 285169 97 - . . scaffold976 TRF Tandem_Repeat 285900 285950 68 + . . scaffold976 TRF Tandem_Repeat 285913 285950 53 + . . scaffold976 WUBlastX DNA_TcMar-Tc1 287108 287419 81 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 287440 287499 32 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 287892 288035 30 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 288072 288203 28 - . . scaffold976 WUBlastX DNA_TcMar-Tc1 288072 288176 39 - . . scaffold976 GLEAN promoter 290101 291100 0.987682 + . ID=CGI_10014015; scaffold976 GLEAN mRNA 291101 303345 0.987682 + . ID=CGI_10014015; scaffold976 GLEAN mRNA 294528 318318 0.271802 - . ID=CGI_10014016; scaffold976 TRF Tandem_Repeat 298357 298410 90 + . . scaffold976 GLEAN promoter 302574 303573 0.551212 + . ID=CGI_10014017; scaffold976 GLEAN mRNA 303574 336885 0.551212 + . ID=CGI_10014017; scaffold976 TRF Tandem_Repeat 314613 314656 88 + . . scaffold976 TRF Tandem_Repeat 315448 315526 149 + . . scaffold976 GLEAN promoter 318319 319318 0.271802 - . ID=CGI_10014016; scaffold976 TRF Tandem_Repeat 325215 325264 55 + . . scaffold976 TRF Tandem_Repeat 325669 325719 102 + . . scaffold976 TRF Tandem_Repeat 327317 327393 86 + . . scaffold976 WUBlastX LINE_Penelope 327879 327980 32 + . . scaffold976 WUBlastX LINE_Penelope 328018 328239 46 + . . scaffold976 TRF Tandem_Repeat 334860 334899 53 + . . scaffold976 GLEAN promoter 336223 337222 0.991461 + . ID=CGI_10014018; scaffold976 GLEAN mRNA 337223 345717 0.991461 + . ID=CGI_10014018; scaffold976 GLEAN mRNA 342039 344377 0.988921 - . ID=CGI_10014019; scaffold976 GLEAN promoter 344378 345377 0.988921 - . ID=CGI_10014019; scaffold976 GLEAN promoter 355629 356628 0.51151 + . ID=CGI_10014020; scaffold976 GLEAN mRNA 356629 381531 0.51151 + . ID=CGI_10014020; scaffold976 TRF Tandem_Repeat 359227 359947 921 + . . scaffold976 TRF Tandem_Repeat 362426 362488 119 + . . scaffold976 TRF Tandem_Repeat 369724 369754 62 + . . scaffold976 WUBlastX LINE_L2 371007 371357 80 + . . scaffold976 WUBlastX LINE_L2 371097 371345 98 + . . scaffold976 WUBlastX LINE_L2 371100 371447 24 + . . scaffold976 WUBlastX LINE_L2 372295 372846 62 + . . scaffold976 WUBlastX LINE_L2 372920 373162 20 + . . scaffold976 WUBlastX LINE_L2 372932 373099 21 + . . scaffold976 WUBlastX LINE_L2 373159 373419 37 + . . scaffold976 TRF Tandem_Repeat 375562 375620 118 + . . scaffold976 TRF Tandem_Repeat 377755 377785 62 + . . scaffold977 TRF Tandem_Repeat 4741 4779 78 + . . scaffold977 TRF Tandem_Repeat 6928 7109 154 + . . scaffold977 TRF Tandem_Repeat 6949 7109 127 + . . scaffold977 TRF Tandem_Repeat 12095 12144 66 + . . scaffold977 TRF Tandem_Repeat 12485 12527 50 + . . scaffold977 TRF Tandem_Repeat 18904 18950 87 + . . scaffold977 TRF Tandem_Repeat 24715 24780 73 + . . scaffold977 TRF Tandem_Repeat 24715 24777 94 + . . scaffold977 TRF Tandem_Repeat 24720 24777 64 + . . scaffold977 TRF Tandem_Repeat 54153 54991 1318 + . . scaffold977 WUBlastX LINE_Penelope 72685 73233 65 - . . scaffold977 WUBlastX LINE_Penelope 72832 73299 69 - . . scaffold977 TRF Tandem_Repeat 75555 75636 137 + . . scaffold977 GLEAN promoter 78269 79268 0.443306 + . ID=CGI_10017161; scaffold977 GLEAN mRNA 79269 111723 0.443306 + . ID=CGI_10017161; scaffold977 TRF Tandem_Repeat 87805 87841 74 + . . scaffold977 TRF Tandem_Repeat 87841 87883 59 + . . scaffold977 TRF Tandem_Repeat 97634 98400 896 + . . scaffold977 GLEAN mRNA 115691 116437 0.589494 - . ID=CGI_10017162; scaffold977 GLEAN promoter 116438 117437 0.589494 - . ID=CGI_10017162; scaffold977 TRF Tandem_Repeat 125823 126237 408 + . . scaffold977 TRF Tandem_Repeat 125828 126206 274 + . . scaffold977 TRF Tandem_Repeat 126631 131065 7331 + . . scaffold977 TRF Tandem_Repeat 144994 145039 92 + . . scaffold977 GLEAN mRNA 146070 167200 0.562252 - . ID=CGI_10017163; scaffold977 TRF Tandem_Repeat 149598 151587 3665 + . . scaffold977 WUBlastX LINE_CR1-L2 156277 156516 40 + . . scaffold977 GLEAN promoter 163557 164556 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 164539 165288 372 + . . scaffold977 GLEAN mRNA 164557 166422 1 + . ID=CGI_10017164; scaffold977 WUBlastX DNA_hAT 165610 166335 56 + . . scaffold977 WUBlastX DNA_hAT 165664 166140 150 + . . scaffold977 GLEAN promoter 167201 168200 0.562252 - . ID=CGI_10017163; scaffold977 GLEAN mRNA 167547 170155 0.999375 - . ID=CGI_10017165; scaffold977 GLEAN promoter 170156 171155 0.999375 - . ID=CGI_10017165; scaffold977 GLEAN promoter 173210 174209 0.638907 + . ID=CGI_10017166; scaffold977 GLEAN mRNA 174210 178836 0.638907 + . ID=CGI_10017166; scaffold977 GLEAN mRNA 183797 188607 0.998399 - . ID=CGI_10017167; scaffold977 TRF Tandem_Repeat 185090 186214 1541 + . . scaffold977 GLEAN promoter 188608 189607 0.998399 - . ID=CGI_10017167; scaffold977 TRF Tandem_Repeat 189486 190151 648 + . . scaffold977 TRF Tandem_Repeat 189758 190151 680 + . . scaffold977 TRF Tandem_Repeat 194043 194168 137 + . . scaffold977 GLEAN promoter 196622 197621 1 + . ID=CGI_10017168; scaffold977 TRF Tandem_Repeat 196751 196958 239 + . . scaffold977 GLEAN mRNA 197622 202397 1 + . ID=CGI_10017168; scaffold977 GLEAN mRNA 203460 205495 1 - . ID=CGI_10017169; scaffold977 GLEAN promoter 205496 206495 1 - . ID=CGI_10017169; scaffold977 WUBlastX LTR_Gypsy 209808 210023 20 + . . scaffold977 WUBlastX LTR_Gypsy 209850 210245 31 + . . scaffold977 WUBlastX LTR_Gypsy 210076 210399 73 + . . scaffold977 WUBlastX LTR_Gypsy 210392 210520 80 + . . scaffold977 WUBlastX LTR_Gypsy 210413 210556 80 + . . scaffold977 WUBlastX LTR_Gypsy 210447 210983 88 + . . scaffold977 WUBlastX LTR_Gypsy 210585 210971 107 + . . scaffold977 WUBlastX LTR_Gypsy-Cigr 210681 210971 153 + . . scaffold977 WUBlastX LTR_Gypsy 210976 211317 27 + . . scaffold977 WUBlastX LTR_Gypsy 210988 211161 127 + . . scaffold977 WUBlastX LTR_Gypsy-Cigr 211235 211552 57 + . . scaffold977 WUBlastX LTR_Gypsy 211247 211456 82 + . . scaffold977 WUBlastX LTR_Gypsy 211458 211670 45 + . . scaffold977 GLEAN mRNA 212568 255339 0.380603 - . ID=CGI_10017170; scaffold977 TRF Tandem_Repeat 218168 218322 86 + . . scaffold977 TRF Tandem_Repeat 218920 218977 80 + . . scaffold977 TRF Tandem_Repeat 219912 220009 92 + . . scaffold977 TRF Tandem_Repeat 236842 236895 108 + . . scaffold977 GLEAN promoter 255340 256339 0.380603 - . ID=CGI_10017170; scaffold977 TRF Tandem_Repeat 260456 260483 56 + . . scaffold977 TRF Tandem_Repeat 261457 261523 98 + . . scaffold977 WUBlastX DNA_TcMar-Tc2 302455 302715 30 + . . scaffold977 WUBlastX DNA_TcMar-Tc2 302572 302706 63 + . . scaffold977 WUBlastX DNA_TcMar-Fot1 302595 303050 74 + . . scaffold977 WUBlastX DNA_TcMar-Tc2 302733 303074 97 + . . scaffold977 WUBlastX DNA_TcMar-Fot1 302757 303137 96 + . . scaffold977 WUBlastX DNA_TcMar-Tc2 302835 303251 93 + . . scaffold977 WUBlastX DNA_TcMar-Tc2 302835 303065 105 + . . scaffold977 WUBlastX LTR_Ngaro 310602 311399 304 + . . scaffold977 WUBlastX LTR_Ngaro 311219 311887 268 + . . scaffold977 WUBlastX LTR_Ngaro 311219 312157 254 + . . scaffold977 WUBlastX LTR_Ngaro 312279 312416 58 + . . scaffold977 WUBlastX LTR_Ngaro 312422 312622 67 + . . scaffold977 WUBlastX LTR_Ngaro 312631 312723 51 + . . scaffold977 TRF Tandem_Repeat 317633 317972 207 + . . scaffold977 TRF Tandem_Repeat 317668 317972 172 + . . scaffold977 TRF Tandem_Repeat 317828 317947 134 + . . scaffold977 TRF Tandem_Repeat 322386 322456 133 + . . scaffold977 WUBlastX LINE_L1-Tx1 363068 363538 37 - . . scaffold977 WUBlastX LINE_L1-Tx1 363164 363676 52 - . . scaffold977 WUBlastX LINE_L1-Tx1 363828 363896 21 - . . scaffold977 WUBlastX LINE_L1 363901 363963 20 - . . scaffold977 WUBlastX LINE_L1-Tx1 364131 364211 22 - . . scaffold977 WUBlastX LINE_L1-Tx1 364178 364381 66 - . . scaffold977 WUBlastX LINE_L1-Tx1 364208 364510 53 - . . scaffold977 WUBlastX LINE_L1-Tx1 364211 364381 97 - . . scaffold977 WUBlastX LINE_L1-Tx1 364458 365153 373 - . . scaffold977 WUBlastX LINE_L1-Tx1 365141 365575 204 - . . scaffold977 WUBlastX LINE_L1-Tx1 365500 365865 105 - . . scaffold977 WUBlastX LINE_L1-Tx1 365596 365916 43 - . . scaffold977 TRF Tandem_Repeat 366392 366447 112 + . . scaffold977 TRF Tandem_Repeat 396845 396923 158 + . . scaffold977 GLEAN promoter 400347 401346 0.556509 + . ID=CGI_10017171; scaffold977 GLEAN mRNA 401347 413817 0.556509 + . ID=CGI_10017171; scaffold977 TRF Tandem_Repeat 404961 406642 2486 + . . scaffold977 TRF Tandem_Repeat 405232 406642 1980 + . . scaffold977 TRF Tandem_Repeat 410276 411796 1790 + . . scaffold977 GLEAN promoter 418490 419489 1 + . ID=CGI_10017172; scaffold977 GLEAN mRNA 419490 428180 1 + . ID=CGI_10017172; scaffold977 TRF Tandem_Repeat 424056 424102 58 + . . scaffold977 TRF Tandem_Repeat 434341 434388 78 + . . scaffold977 GLEAN mRNA 434972 447726 0.760968 - . ID=CGI_10017173; scaffold977 GLEAN promoter 447727 448726 0.760968 - . ID=CGI_10017173; scaffold977 TRF Tandem_Repeat 447758 447813 112 + . . scaffold977 TRF Tandem_Repeat 448954 449004 52 + . . scaffold977 GLEAN promoter 462512 463511 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 462919 462961 77 + . . scaffold977 GLEAN mRNA 463512 477202 0.777737 + . ID=CGI_10017174; scaffold977 TRF Tandem_Repeat 465443 466373 1043 + . . scaffold977 TRF Tandem_Repeat 465443 466373 1043 + . . scaffold977 TRF Tandem_Repeat 468580 469149 510 + . . scaffold977 TRF Tandem_Repeat 469729 469817 160 + . . scaffold977 TRF Tandem_Repeat 470336 470695 245 + . . scaffold977 TRF Tandem_Repeat 471159 471839 425 + . . scaffold977 TRF Tandem_Repeat 471378 471839 298 + . . scaffold977 TRF Tandem_Repeat 471544 471772 146 + . . scaffold977 TRF Tandem_Repeat 472525 472944 619 + . . scaffold977 TRF Tandem_Repeat 474441 474830 428 + . . scaffold977 TRF Tandem_Repeat 475645 476277 434 + . . scaffold977 GLEAN mRNA 476707 479016 0.925116 - . ID=CGI_10017175; scaffold977 TRF Tandem_Repeat 477380 477467 167 + . . scaffold977 GLEAN promoter 479017 480016 0.925116 - . ID=CGI_10017175; scaffold977 GLEAN mRNA 479030 493032 0.993583 - . ID=CGI_10017176; scaffold977 TRF Tandem_Repeat 479867 479967 96 + . . scaffold977 TRF Tandem_Repeat 482634 482818 325 + . . scaffold977 TRF Tandem_Repeat 484265 484482 373 + . . scaffold977 TRF Tandem_Repeat 486288 487506 811 + . . scaffold977 TRF Tandem_Repeat 486288 486707 287 + . . scaffold977 TRF Tandem_Repeat 486763 487509 1106 + . . scaffold977 TRF Tandem_Repeat 486850 486973 65 + . . scaffold977 GLEAN promoter 493033 494032 0.993583 - . ID=CGI_10017176; scaffold979 GLEAN promoter 8742 9741 1 + . ID=CGI_10000949; scaffold979 GLEAN mRNA 9742 11818 1 + . ID=CGI_10000949; scaffold98 GLEAN promoter 4696 5695 0.999514 + . ID=CGI_10012779; scaffold98 GLEAN mRNA 5696 31450 0.999514 + . ID=CGI_10012779; scaffold98 TRF Tandem_Repeat 7346 7546 163 + . . scaffold98 TRF Tandem_Repeat 7545 7736 134 + . . scaffold98 TRF Tandem_Repeat 28957 28995 78 + . . scaffold98 TRF Tandem_Repeat 30788 30829 75 + . . scaffold98 GLEAN mRNA 38499 46848 0.998032 - . ID=CGI_10012780; scaffold98 WUBlastX LINE_L2 39153 39593 34 - . . scaffold98 GLEAN promoter 46849 47848 0.998032 - . ID=CGI_10012780; scaffold98 TRF Tandem_Repeat 52592 52634 86 + . . scaffold98 TRF Tandem_Repeat 52868 52993 125 + . . scaffold98 TRF Tandem_Repeat 66732 66773 84 + . . scaffold98 TRF Tandem_Repeat 68738 68919 105 + . . scaffold98 TRF Tandem_Repeat 68785 69568 671 + . . scaffold98 TRF Tandem_Repeat 69075 69445 93 + . . scaffold98 TRF Tandem_Repeat 69888 69914 54 + . . scaffold98 TRF Tandem_Repeat 74340 74494 75 + . . scaffold98 TRF Tandem_Repeat 74723 74756 50 + . . scaffold98 TRF Tandem_Repeat 74951 75038 135 + . . scaffold98 TRF Tandem_Repeat 75256 75553 141 + . . scaffold98 TRF Tandem_Repeat 75318 75431 75 + . . scaffold98 TRF Tandem_Repeat 80258 80590 397 + . . scaffold98 TRF Tandem_Repeat 84973 85024 104 + . . scaffold98 TRF Tandem_Repeat 91055 91106 104 + . . scaffold98 TRF Tandem_Repeat 113087 113126 80 + . . scaffold98 TRF Tandem_Repeat 114585 114638 99 + . . scaffold98 TRF Tandem_Repeat 123806 123839 50 + . . scaffold98 TRF Tandem_Repeat 126128 126341 200 + . . scaffold98 TRF Tandem_Repeat 126140 126326 214 + . . scaffold98 TRF Tandem_Repeat 126344 126442 108 + . . scaffold98 TRF Tandem_Repeat 126368 126462 88 + . . scaffold98 WUBlastX LINE_R2-Hero 144735 144887 107 - . . scaffold98 TRF Tandem_Repeat 156472 156552 162 + . . scaffold98 TRF Tandem_Repeat 167676 167733 107 + . . scaffold98 GLEAN mRNA 169414 169647 1 - . ID=CGI_10012781; scaffold98 GLEAN promoter 169648 170647 1 - . ID=CGI_10012781; scaffold98 TRF Tandem_Repeat 174071 174121 75 + . . scaffold98 TRF Tandem_Repeat 175190 175228 78 + . . scaffold98 TRF Tandem_Repeat 177379 177576 267 + . . scaffold98 TRF Tandem_Repeat 184655 184706 104 + . . scaffold98 TRF Tandem_Repeat 185040 185075 72 + . . scaffold98 TRF Tandem_Repeat 185043 185119 57 + . . scaffold98 TRF Tandem_Repeat 186427 186482 112 + . . scaffold98 TRF Tandem_Repeat 187585 187659 141 + . . scaffold98 TRF Tandem_Repeat 188766 188809 88 + . . scaffold98 TRF Tandem_Repeat 189276 189333 116 + . . scaffold98 TRF Tandem_Repeat 190805 190844 80 + . . scaffold98 TRF Tandem_Repeat 191211 191255 74 + . . scaffold98 TRF Tandem_Repeat 192620 192663 88 + . . scaffold98 TRF Tandem_Repeat 195161 195231 97 + . . scaffold98 TRF Tandem_Repeat 196027 196096 104 + . . scaffold98 TRF Tandem_Repeat 196539 196571 66 + . . scaffold98 TRF Tandem_Repeat 197533 197909 538 + . . scaffold98 TRF Tandem_Repeat 199948 200614 865 + . . scaffold98 WUBlastX DNA_IS4EU 221215 221703 52 - . . scaffold98 GLEAN promoter 225154 226153 1 + . ID=CGI_10012782; scaffold98 TRF Tandem_Repeat 225775 225972 324 + . . scaffold98 GLEAN mRNA 226154 230265 1 + . ID=CGI_10012782; scaffold98 WUBlastX DNA_TcMar-Marin 230937 231158 23 - . . scaffold98 WUBlastX DNA_TcMar-Marin 230949 231128 36 - . . scaffold98 TRF Tandem_Repeat 238266 238303 51 + . . scaffold98 WUBlastX LINE_RTE-X 246722 247060 106 - . . scaffold98 WUBlastX LINE_RTE-X 246755 247120 100 - . . scaffold98 GLEAN mRNA 247448 257684 0.505854 - . ID=CGI_10012783; scaffold98 GLEAN promoter 253417 254416 1 + . ID=CGI_10012784; scaffold98 GLEAN mRNA 254417 256463 1 + . ID=CGI_10012784; scaffold98 TRF Tandem_Repeat 255363 255408 92 + . . scaffold98 GLEAN promoter 257685 258684 0.505854 - . ID=CGI_10012783; scaffold98 GLEAN promoter 258501 259500 0.999672 + . ID=CGI_10012785; scaffold98 GLEAN mRNA 259501 266320 0.999672 + . ID=CGI_10012785; scaffold98 TRF Tandem_Repeat 259575 259620 92 + . . scaffold98 GLEAN promoter 265911 266910 0.999942 + . ID=CGI_10012786; scaffold98 GLEAN mRNA 266911 272783 0.999942 + . ID=CGI_10012786; scaffold98 TRF Tandem_Repeat 270057 270099 86 + . . scaffold98 TRF Tandem_Repeat 275915 275953 78 + . . scaffold98 GLEAN promoter 278291 279290 0.999824 + . ID=CGI_10012787; scaffold98 TRF Tandem_Repeat 279160 279288 152 + . . scaffold98 GLEAN mRNA 279291 281147 0.999824 + . ID=CGI_10012787; scaffold98 GLEAN promoter 292112 293111 0.999412 + . ID=CGI_10012788; scaffold98 GLEAN mRNA 293112 300703 0.999412 + . ID=CGI_10012788; scaffold98 GLEAN mRNA 309260 309961 0.999991 - . ID=CGI_10012789; scaffold98 WUBlastX LTR_Copia 309840 309890 25 - . . scaffold98 GLEAN promoter 309962 310961 0.999991 - . ID=CGI_10012789; scaffold98 WUBlastX LTR_Copia 310039 310290 30 - . . scaffold98 WUBlastX LTR_Gypsy 310081 311232 474 - . . scaffold98 WUBlastX LTR_Gypsy-Cigr 310258 311238 716 - . . scaffold98 WUBlastX LTR_Gypsy 311431 312741 1079 - . . scaffold98 TRF Tandem_Repeat 335771 335837 89 + . . scaffold98 WUBlastX LINE_L1-Tx1 336861 336980 53 - . . scaffold98 WUBlastX LINE_L1 336861 337004 44 - . . scaffold980 TRF Tandem_Repeat 5243 5282 80 + . . scaffold980 TRF Tandem_Repeat 8843 8876 50 + . . scaffold980 TRF Tandem_Repeat 8845 8880 58 + . . scaffold980 WUBlastX DNA_hAT 14844 16577 562 + . . scaffold980 GLEAN promoter 17844 18843 0.993362 + . ID=CGI_10019201; scaffold980 GLEAN mRNA 18844 21997 0.993362 + . ID=CGI_10019201; scaffold980 TRF Tandem_Repeat 19695 19996 453 + . . scaffold980 GLEAN mRNA 21638 28265 0.999676 - . ID=CGI_10019202; scaffold980 GLEAN promoter 28266 29265 0.999676 - . ID=CGI_10019202; scaffold980 TRF Tandem_Repeat 30098 30170 103 + . . scaffold980 GLEAN mRNA 30524 41135 0.920529 - . ID=CGI_10019203; scaffold980 TRF Tandem_Repeat 32494 32533 80 + . . scaffold980 GLEAN promoter 41136 42135 0.920529 - . ID=CGI_10019203; scaffold980 WUBlastX LINE_L2 41550 42206 288 - . . scaffold980 WUBlastX LINE_CR1-L2 42202 42312 46 - . . scaffold980 WUBlastX LINE_L2 42236 42631 54 - . . scaffold980 WUBlastX LINE_L2 42314 42670 113 - . . scaffold980 WUBlastX LINE_CR1-L2 42347 42610 129 - . . scaffold980 WUBlastX LINE_RTE-BovB 42764 42976 119 + . . scaffold980 GLEAN mRNA 43953 80997 0.883179 - . ID=CGI_10019204; scaffold980 GLEAN promoter 45074 46073 0.59339 + . ID=CGI_10019205; scaffold980 GLEAN mRNA 46074 58092 0.59339 + . ID=CGI_10019205; scaffold980 TRF Tandem_Repeat 52734 53655 1374 + . . scaffold980 TRF Tandem_Repeat 54518 54595 52 + . . scaffold980 TRF Tandem_Repeat 54698 54775 63 + . . scaffold980 TRF Tandem_Repeat 55439 55487 98 + . . scaffold980 WUBlastX LINE_RTE-X 77698 78246 74 - . . scaffold980 WUBlastX LINE_RTE-X 77767 78126 80 - . . scaffold980 WUBlastX LINE_RTE-X 77815 78210 80 - . . scaffold980 WUBlastX LINE_RTE-X 78245 78658 233 - . . scaffold980 WUBlastX LINE_RTE-X 78621 79466 494 - . . scaffold980 WUBlastX LINE_L2 78927 79571 108 - . . scaffold980 WUBlastX LINE_I 80376 80426 22 - . . scaffold980 GLEAN promoter 80998 81997 0.883179 - . ID=CGI_10019204; scaffold980 TRF Tandem_Repeat 83032 83069 76 + . . scaffold980 GLEAN promoter 83630 84629 0.968185 + . ID=CGI_10019206; scaffold980 GLEAN mRNA 84630 94401 0.968185 + . ID=CGI_10019206; scaffold980 GLEAN mRNA 99491 101833 0.370433 - . ID=CGI_10019207; scaffold980 GLEAN promoter 101834 102833 0.370433 - . ID=CGI_10019207; scaffold980 TRF Tandem_Repeat 109397 109540 175 + . . scaffold980 GLEAN promoter 109458 110457 1 + . ID=CGI_10019208; scaffold980 TRF Tandem_Repeat 110020 110230 262 + . . scaffold980 GLEAN mRNA 110458 124542 1 + . ID=CGI_10019208; scaffold980 GLEAN mRNA 126694 127017 1 - . ID=CGI_10019209; scaffold980 GLEAN promoter 127018 128017 1 - . ID=CGI_10019209; scaffold980 GLEAN mRNA 127019 130424 1 - . ID=CGI_10019210; scaffold980 GLEAN promoter 130425 131424 1 - . ID=CGI_10019210; scaffold980 WUBlastX LINE_RTE-X 130932 131234 30 + . . scaffold980 WUBlastX LINE_RTE-X 130953 131114 52 + . . scaffold980 GLEAN promoter 131663 132662 0.504092 + . ID=CGI_10019211; scaffold980 GLEAN mRNA 132663 152618 0.504092 + . ID=CGI_10019211; scaffold980 TRF Tandem_Repeat 153514 153544 62 + . . scaffold980 TRF Tandem_Repeat 155099 156020 1263 + . . scaffold980 GLEAN promoter 156697 157696 1 + . ID=CGI_10019212; scaffold980 TRF Tandem_Repeat 156757 156796 71 + . . scaffold980 GLEAN mRNA 157697 164029 1 + . ID=CGI_10019212; scaffold980 GLEAN mRNA 163810 172327 0.499535 - . ID=CGI_10019213; scaffold980 WUBlastX LINE_RTE-X 164936 165277 36 + . . scaffold980 WUBlastX LINE_RTE-X 165166 165585 124 + . . scaffold980 WUBlastX LINE_RTE-X 165587 165745 42 + . . scaffold980 WUBlastX LINE_RTE-X 165590 165724 60 + . . scaffold980 WUBlastX LINE_RTE-X 165599 165874 33 + . . scaffold980 TRF Tandem_Repeat 167459 167494 72 + . . scaffold980 GLEAN promoter 172328 173327 0.499535 - . ID=CGI_10019213; scaffold980 GLEAN promoter 172408 173407 0.851147 + . ID=CGI_10019214; scaffold980 GLEAN mRNA 173408 183172 0.851147 + . ID=CGI_10019214; scaffold980 TRF Tandem_Repeat 177112 177784 487 + . . scaffold980 TRF Tandem_Repeat 177128 177791 209 + . . scaffold980 TRF Tandem_Repeat 177380 177784 447 + . . scaffold980 TRF Tandem_Repeat 177851 178037 207 + . . scaffold980 TRF Tandem_Repeat 180050 180957 1163 + . . scaffold980 TRF Tandem_Repeat 185958 185991 61 + . . scaffold980 TRF Tandem_Repeat 188636 189768 1269 + . . scaffold980 TRF Tandem_Repeat 188636 189768 1363 + . . scaffold980 TRF Tandem_Repeat 191639 191711 60 + . . scaffold980 WUBlastX RC_Helitron 191857 192408 123 + . . scaffold980 WUBlastX RC_Helitron 192506 192850 22 + . . scaffold980 TRF Tandem_Repeat 192850 193525 780 + . . scaffold980 TRF Tandem_Repeat 192953 193600 794 + . . scaffold980 TRF Tandem_Repeat 193074 193600 740 + . . scaffold980 TRF Tandem_Repeat 193386 193549 106 + . . scaffold980 TRF Tandem_Repeat 197825 198877 1151 + . . scaffold980 TRF Tandem_Repeat 198221 198539 150 + . . scaffold980 GLEAN mRNA 201523 207740 0.811712 - . ID=CGI_10019215; scaffold980 GLEAN promoter 207741 208740 0.811712 - . ID=CGI_10019215; scaffold980 TRF Tandem_Repeat 210761 210825 123 + . . scaffold980 TRF Tandem_Repeat 210889 211626 952 + . . scaffold980 TRF Tandem_Repeat 210968 211066 67 + . . scaffold980 TRF Tandem_Repeat 211138 211274 62 + . . scaffold980 TRF Tandem_Repeat 218091 218150 120 + . . scaffold980 TRF Tandem_Repeat 220531 222311 1556 + . . scaffold980 TRF Tandem_Repeat 220853 222178 141 + . . scaffold980 TRF Tandem_Repeat 220859 222178 234 + . . scaffold980 WUBlastX LINE_L2 222628 223401 193 - . . scaffold980 WUBlastX LINE_CR1 223068 224582 354 - . . scaffold980 WUBlastX LINE_L2 223401 224714 687 - . . scaffold980 TRF Tandem_Repeat 227071 227120 75 + . . scaffold980 WUBlastX LINE_CR1-L2 227839 228171 100 - . . scaffold980 WUBlastX LINE_CR1-L2 227935 228249 86 - . . scaffold980 TRF Tandem_Repeat 228692 228799 102 + . . scaffold980 TRF Tandem_Repeat 228736 228837 114 + . . scaffold980 TRF Tandem_Repeat 228786 228835 57 + . . scaffold980 TRF Tandem_Repeat 228786 228837 59 + . . scaffold980 GLEAN mRNA 241945 242148 0.518358 - . ID=CGI_10019216; scaffold980 WUBlastX DNA_Academ 241948 242283 89 - . . scaffold980 WUBlastX DNA_Academ 241999 242241 91 - . . scaffold980 GLEAN promoter 242149 243148 0.518358 - . ID=CGI_10019216; scaffold980 GLEAN mRNA 242201 242902 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 242261 242881 299 - . . scaffold980 WUBlastX DNA_Academ 242879 243469 297 - . . scaffold980 GLEAN promoter 242903 243902 0.579788 - . ID=CGI_10019217; scaffold980 WUBlastX DNA_Academ 243439 244008 198 - . . scaffold980 WUBlastX DNA_Academ 243607 243993 270 - . . scaffold980 WUBlastX DNA_Academ 243986 244426 184 - . . scaffold980 WUBlastX DNA_Academ 244336 244785 107 - . . scaffold980 WUBlastX DNA_Academ 244750 244962 46 - . . scaffold980 TRF Tandem_Repeat 252771 252828 116 + . . scaffold980 TRF Tandem_Repeat 252973 253024 104 + . . scaffold980 TRF Tandem_Repeat 253714 253825 52 + . . scaffold980 WUBlastX LINE_L1-Tx1 258198 258689 85 + . . scaffold980 GLEAN mRNA 266351 269154 0.998422 - . ID=CGI_10019218; scaffold980 GLEAN promoter 269155 270154 0.998422 - . ID=CGI_10019218; scaffold980 TRF Tandem_Repeat 269235 269259 50 + . . scaffold980 WUBlastX LINE_RTE-X 279762 280010 32 + . . scaffold980 WUBlastX LINE_RTE-X 279864 280169 52 + . . scaffold980 WUBlastX LINE_L1-Tx1 281622 281801 66 + . . scaffold980 WUBlastX LINE_L1-Tx1 281649 281840 48 + . . scaffold980 WUBlastX LINE_L1-Tx1 281652 281795 111 + . . scaffold980 GLEAN promoter 292978 293977 0.986205 + . ID=CGI_10019220; scaffold980 GLEAN mRNA 293978 294190 0.986205 + . ID=CGI_10019220; scaffold980 TRF Tandem_Repeat 317121 317153 52 + . . scaffold980 TRF Tandem_Repeat 321928 321971 88 + . . scaffold980 TRF Tandem_Repeat 324080 324131 59 + . . scaffold980 TRF Tandem_Repeat 324096 324130 52 + . . scaffold980 TRF Tandem_Repeat 330513 330555 86 + . . scaffold980 WUBlastX LTR_Ngaro 331780 331950 90 - . . scaffold980 WUBlastX LTR_Ngaro 331994 332245 98 - . . scaffold980 WUBlastX LTR_Ngaro 332030 332341 75 - . . scaffold980 WUBlastX LTR_Ngaro 332310 332372 21 - . . scaffold980 TRF Tandem_Repeat 337756 337801 92 + . . scaffold980 WUBlastX DNA_Maverick 342701 342955 49 + . . scaffold980 WUBlastX DNA_Maverick 342770 342955 74 + . . scaffold980 WUBlastX DNA_Maverick 342849 343130 35 + . . scaffold980 WUBlastX DNA_Maverick 342960 343067 63 + . . scaffold980 TRF Tandem_Repeat 346292 346331 80 + . . scaffold980 GLEAN promoter 352911 353910 0.999828 + . ID=CGI_10019221; scaffold980 GLEAN mRNA 353911 355249 0.999828 + . ID=CGI_10019221; scaffold980 GLEAN promoter 357361 358360 0.716831 + . ID=CGI_10019222; scaffold980 GLEAN mRNA 358361 370243 0.716831 + . ID=CGI_10019222; scaffold980 TRF Tandem_Repeat 362909 362957 57 + . . scaffold980 TRF Tandem_Repeat 363136 364459 1340 + . . scaffold980 GLEAN promoter 369680 370679 0.701928 + . ID=CGI_10019223; scaffold980 GLEAN mRNA 370680 372646 0.701928 + . ID=CGI_10019223; scaffold980 GLEAN promoter 381734 382733 1 + . ID=CGI_10019224; scaffold980 GLEAN mRNA 382734 385646 1 + . ID=CGI_10019224; scaffold980 GLEAN promoter 386456 387455 1 + . ID=CGI_10019225; scaffold980 GLEAN mRNA 387456 389864 1 + . ID=CGI_10019225; scaffold980 GLEAN mRNA 392115 398217 1 - . ID=CGI_10019226; scaffold980 GLEAN promoter 398194 399193 1 + . ID=CGI_10019227; scaffold980 GLEAN promoter 398218 399217 1 - . ID=CGI_10019226; scaffold980 TRF Tandem_Repeat 398534 398586 106 + . . scaffold980 GLEAN mRNA 399194 400426 1 + . ID=CGI_10019227; scaffold980 TRF Tandem_Repeat 406751 406783 66 + . . scaffold980 GLEAN promoter 408266 409265 1 + . ID=CGI_10019228; scaffold980 GLEAN mRNA 409266 412340 1 + . ID=CGI_10019228; scaffold980 TRF Tandem_Repeat 410822 410910 160 + . . scaffold980 GLEAN mRNA 417655 426319 1 - . ID=CGI_10019230; scaffold980 GLEAN promoter 426320 427319 1 - . ID=CGI_10019230; scaffold980 GLEAN mRNA 428267 429055 0.498321 - . ID=CGI_10019231; scaffold980 GLEAN promoter 429056 430055 0.498321 - . ID=CGI_10019231; scaffold980 TRF Tandem_Repeat 434263 434317 110 + . . scaffold980 GLEAN mRNA 434378 440213 0.951926 - . ID=CGI_10019232; scaffold980 TRF Tandem_Repeat 439333 439374 66 + . . scaffold980 GLEAN promoter 439866 440865 0.593329 + . ID=CGI_10019233; scaffold980 GLEAN promoter 440214 441213 0.951926 - . ID=CGI_10019232; scaffold980 GLEAN mRNA 440866 443497 0.593329 + . ID=CGI_10019233; scaffold980 TRF Tandem_Repeat 442401 442642 308 + . . scaffold980 GLEAN mRNA 443580 446985 1 - . ID=CGI_10019234; scaffold980 GLEAN promoter 446986 447985 1 - . ID=CGI_10019234; scaffold980 GLEAN promoter 449570 450569 0.999673 + . ID=CGI_10019235; scaffold980 GLEAN mRNA 450570 461359 0.999673 + . ID=CGI_10019235; scaffold980 GLEAN mRNA 455007 455270 0.618241 - . ID=CGI_10019236; scaffold980 GLEAN promoter 455271 456270 0.618241 - . ID=CGI_10019236; scaffold980 GLEAN promoter 462062 463061 0.999415 + . ID=CGI_10019237; scaffold980 GLEAN mRNA 463062 472960 0.999415 + . ID=CGI_10019237; scaffold980 WUBlastX LINE_RTE-X 477196 479403 1041 + . . scaffold980 TRF Tandem_Repeat 479479 479510 64 + . . scaffold980 TRF Tandem_Repeat 481541 481760 113 + . . scaffold980 GLEAN mRNA 481863 486618 0.998274 - . ID=CGI_10019238; scaffold980 GLEAN promoter 486619 487618 0.998274 - . ID=CGI_10019238; scaffold980 GLEAN promoter 487133 488132 0.998641 + . ID=CGI_10019239; scaffold980 GLEAN mRNA 488133 489011 0.998641 + . ID=CGI_10019239; scaffold980 GLEAN mRNA 492519 503122 1 - . ID=CGI_10019240; scaffold980 GLEAN promoter 503123 504122 1 - . ID=CGI_10019240; scaffold980 GLEAN promoter 503827 504826 1 + . ID=CGI_10019241; scaffold980 GLEAN mRNA 504827 511781 1 + . ID=CGI_10019241; scaffold980 WUBlastX LTR_Gypsy-Cigr 516235 516420 82 - . . scaffold980 WUBlastX LTR_Gypsy 516292 516444 52 - . . scaffold980 WUBlastX LTR_Gypsy 516444 517067 50 - . . scaffold980 WUBlastX LTR_Gypsy 516444 516569 51 - . . scaffold980 TRF Tandem_Repeat 516611 516677 102 + . . scaffold980 WUBlastX LTR_Gypsy 516891 517124 39 - . . scaffold980 WUBlastX LTR_Gypsy 516915 517226 34 - . . scaffold980 WUBlastX LTR_Gypsy 516918 517070 53 - . . scaffold980 WUBlastX LTR_Gypsy 516984 517166 36 - . . scaffold980 WUBlastX LTR_Gypsy 516993 517277 30 - . . scaffold980 GLEAN promoter 519474 520473 0.997417 + . ID=CGI_10019242; scaffold980 GLEAN mRNA 520474 526155 0.997417 + . ID=CGI_10019242; scaffold980 TRF Tandem_Repeat 523493 523535 86 + . . scaffold980 TRF Tandem_Repeat 523818 523859 84 + . . scaffold980 GLEAN mRNA 526198 535314 0.58454 - . ID=CGI_10019243; scaffold980 GLEAN promoter 531284 532283 0.999816 + . ID=CGI_10019244; scaffold980 GLEAN mRNA 532284 554195 0.999816 + . ID=CGI_10019244; scaffold980 GLEAN promoter 535315 536314 0.58454 - . ID=CGI_10019243; scaffold980 TRF Tandem_Repeat 538696 538721 52 + . . scaffold980 TRF Tandem_Repeat 545445 546190 977 + . . scaffold980 TRF Tandem_Repeat 547254 547321 70 + . . scaffold980 TRF Tandem_Repeat 551151 551897 880 + . . scaffold980 TRF Tandem_Repeat 553501 553530 51 + . . scaffold980 TRF Tandem_Repeat 555675 556496 1373 + . . scaffold980 GLEAN promoter 557559 558558 0.999998 + . ID=CGI_10019245; scaffold980 TRF Tandem_Repeat 558244 558298 92 + . . scaffold980 GLEAN mRNA 558559 565592 0.999998 + . ID=CGI_10019245; scaffold980 GLEAN promoter 570438 571437 0.991145 + . ID=CGI_10019247; scaffold980 GLEAN mRNA 570740 570934 0.481109 - . ID=CGI_10019246; scaffold980 GLEAN promoter 570935 571934 0.481109 - . ID=CGI_10019246; scaffold980 GLEAN mRNA 571438 573129 0.991145 + . ID=CGI_10019247; scaffold980 WUBlastX LTR_Gypsy 572275 572397 31 + . . scaffold980 WUBlastX LTR_Gypsy 572731 572874 26 + . . scaffold980 WUBlastX LTR_DIRS 573183 574862 992 + . . scaffold980 WUBlastX LTR_DIRS 573210 575207 780 + . . scaffold980 WUBlastX LTR_DIRS 575102 576025 360 + . . scaffold980 GLEAN promoter 578019 579018 1 + . ID=CGI_10019248; scaffold980 GLEAN mRNA 579019 580798 1 + . ID=CGI_10019248; scaffold982 TRF Tandem_Repeat 98 221 107 + . . scaffold982 TRF Tandem_Repeat 298 384 90 + . . scaffold982 WUBlastX LINE_RTE-X 1790 3469 366 - . . scaffold982 WUBlastX LINE_RTE-X 3004 4047 240 - . . scaffold982 WUBlastX LINE_RTE-X 4152 5096 93 - . . scaffold982 WUBlastX LINE_RTE-X 4338 5099 169 - . . scaffold982 WUBlastX LINE_RTE-X 6730 7068 61 - . . scaffold982 WUBlastX LINE_RTE-X 6853 7206 79 - . . scaffold982 WUBlastX LINE_RTE-X 7190 7306 72 - . . scaffold982 WUBlastX DNA_Harbinger 14570 14641 25 - . . scaffold982 WUBlastX DNA_Harbinger 15632 15835 28 - . . scaffold982 WUBlastX DNA_Harbinger 17034 17195 79 - . . scaffold983 WUBlastX LINE_RTE-X 1733 2449 54 - . . scaffold983 WUBlastX LINE_RTE-X 1856 2449 159 - . . scaffold983 GLEAN promoter 3098 4097 0.998023 + . ID=CGI_10014021; scaffold983 GLEAN mRNA 4098 5171 0.998023 + . ID=CGI_10014021; scaffold983 GLEAN promoter 4583 5582 1 + . ID=CGI_10014022; scaffold983 GLEAN mRNA 5583 8788 1 + . ID=CGI_10014022; scaffold983 WUBlastX LTR_Gypsy 10294 10779 64 + . . scaffold983 WUBlastX LTR_Gypsy 10438 10818 232 + . . scaffold983 WUBlastX LTR_Gypsy 10769 10918 55 + . . scaffold983 WUBlastX LTR_Gypsy 10896 11231 92 + . . scaffold983 WUBlastX LTR_Gypsy 10953 11291 28 + . . scaffold983 WUBlastX LTR_Gypsy-Cigr 10956 11219 116 + . . scaffold983 GLEAN promoter 15962 16961 0.550884 + . ID=CGI_10014023; scaffold983 GLEAN mRNA 16962 18259 0.550884 + . ID=CGI_10014023; scaffold983 GLEAN promoter 17332 18331 0.916587 + . ID=CGI_10014025; scaffold983 GLEAN mRNA 18332 29028 0.916587 + . ID=CGI_10014025; scaffold983 GLEAN promoter 29544 30543 0.991775 + . ID=CGI_10014026; scaffold983 GLEAN mRNA 30544 31438 0.991775 + . ID=CGI_10014026; scaffold983 TRF Tandem_Repeat 47874 48222 387 + . . scaffold983 TRF Tandem_Repeat 63325 63360 72 + . . scaffold983 WUBlastX LTR_Gypsy 71438 72319 165 + . . scaffold983 WUBlastX LTR_Gypsy 71579 72373 219 + . . scaffold983 WUBlastX LTR_Gypsy 72299 72415 21 + . . scaffold983 WUBlastX LTR_Gypsy 72403 76146 1846 + . . scaffold983 WUBlastX LTR_Gypsy 74254 76578 1245 + . . scaffold983 WUBlastX LTR_Copia 76330 76755 37 + . . scaffold983 TRF Tandem_Repeat 78573 78672 119 + . . scaffold983 TRF Tandem_Repeat 78578 78671 152 + . . scaffold983 TRF Tandem_Repeat 80980 81416 381 + . . scaffold983 GLEAN promoter 89425 90424 0.906413 + . ID=CGI_10014027; scaffold983 TRF Tandem_Repeat 89930 89974 90 + . . scaffold983 GLEAN mRNA 90425 91342 0.906413 + . ID=CGI_10014027; scaffold983 WUBlastX LINE_CR1 90590 91249 42 + . . scaffold983 WUBlastX LINE_RTE-X 90704 91300 266 + . . scaffold983 WUBlastX LINE_RTE-X 91358 92065 489 + . . scaffold983 TRF Tandem_Repeat 93776 94178 427 + . . scaffold983 TRF Tandem_Repeat 93776 94178 378 + . . scaffold983 TRF Tandem_Repeat 94253 94339 113 + . . scaffold983 TRF Tandem_Repeat 110119 110144 52 + . . scaffold983 WUBlastX LTR_Ngaro 113848 114618 239 - . . scaffold983 WUBlastX LTR_Ngaro 114594 116153 1103 - . . scaffold983 WUBlastX LTR_Ngaro 116131 116475 78 - . . scaffold983 TRF Tandem_Repeat 119247 119318 135 + . . scaffold983 WUBlastX DNA_Maverick 121254 122135 67 - . . scaffold983 WUBlastX DNA_Maverick 121356 122087 199 - . . scaffold983 WUBlastX DNA_Maverick 122149 122469 125 - . . scaffold983 WUBlastX DNA_Maverick 122518 122625 36 - . . scaffold983 WUBlastX DNA_Maverick 122923 123060 50 - . . scaffold983 WUBlastX DNA_Maverick 123059 124165 183 - . . scaffold983 GLEAN promoter 125444 126443 0.262591 + . ID=CGI_10014028; scaffold983 GLEAN mRNA 126444 129330 0.262591 + . ID=CGI_10014028; scaffold983 WUBlastX DNA_Maverick 131453 132508 547 + . . scaffold983 GLEAN promoter 131926 132925 0.632454 + . ID=CGI_10014029; scaffold983 GLEAN mRNA 132926 133180 0.632454 + . ID=CGI_10014029; scaffold983 WUBlastX DNA_Maverick 134220 134549 99 + . . scaffold983 WUBlastX DNA_Maverick 134510 135034 161 + . . scaffold983 WUBlastX DNA_Maverick 135020 135430 171 + . . scaffold983 WUBlastX DNA_Maverick 135503 135862 123 + . . scaffold983 TRF Tandem_Repeat 137314 137446 153 + . . scaffold983 TRF Tandem_Repeat 141443 141499 51 + . . scaffold983 TRF Tandem_Repeat 141444 141493 73 + . . scaffold983 TRF Tandem_Repeat 145593 145620 56 + . . scaffold983 TRF Tandem_Repeat 163612 163662 75 + . . scaffold983 TRF Tandem_Repeat 163616 163662 67 + . . scaffold983 TRF Tandem_Repeat 164589 164663 78 + . . scaffold983 TRF Tandem_Repeat 164592 164662 70 + . . scaffold983 TRF Tandem_Repeat 164596 164638 86 + . . scaffold983 TRF Tandem_Repeat 164636 164663 56 + . . scaffold983 TRF Tandem_Repeat 165678 165831 106 + . . scaffold983 TRF Tandem_Repeat 165822 165954 124 + . . scaffold983 WUBlastX LINE_Proto2 167287 168183 101 + . . scaffold983 WUBlastX LINE_Proto2 169077 169271 36 + . . scaffold983 WUBlastX LINE_Proto2 169110 169316 25 + . . scaffold983 WUBlastX LINE_Proto2 169122 169271 47 + . . scaffold983 WUBlastX LINE_RTE-X 170104 170649 69 + . . scaffold983 WUBlastX LINE_L1 170227 170733 94 + . . scaffold983 WUBlastX LINE_Jockey 170491 170793 65 + . . scaffold983 WUBlastX LINE_Jockey 170944 171150 35 + . . scaffold983 WUBlastX LINE_CR1 170983 171222 80 + . . scaffold983 WUBlastX LINE_RTE-X 171007 171423 49 + . . scaffold983 WUBlastX LINE_CR1 171204 171332 66 + . . scaffold983 WUBlastX LINE_CR1 171404 171505 29 + . . scaffold983 WUBlastX LINE_Jockey 171508 171591 28 + . . scaffold983 TRF Tandem_Repeat 186943 187034 54 + . . scaffold983 TRF Tandem_Repeat 186943 187002 50 + . . scaffold983 TRF Tandem_Repeat 186949 186992 61 + . . scaffold983 TRF Tandem_Repeat 187151 187230 65 + . . scaffold983 TRF Tandem_Repeat 190794 191602 737 + . . scaffold983 TRF Tandem_Repeat 192871 193070 137 + . . scaffold983 WUBlastX LINE_RTE-X 207820 208056 69 - . . scaffold983 WUBlastX LINE_RTE-X 207856 208125 114 - . . scaffold983 WUBlastX DNA_hAT-Ac 209369 210949 349 - . . scaffold983 WUBlastX DNA_hAT-hATx 211198 211335 24 - . . scaffold983 WUBlastX LINE_RTE-X 214501 214875 74 + . . scaffold983 WUBlastX LINE_RTE-X 214573 214872 96 + . . scaffold983 WUBlastX LINE_RTE-X 214573 215025 89 + . . scaffold983 WUBlastX LINE_RTE-X 215045 215200 38 + . . scaffold983 WUBlastX LINE_RTE-X 216627 216926 80 - . . scaffold983 WUBlastX LINE_RTE-X 216633 217184 42 - . . scaffold983 WUBlastX LINE_RTE-X 216633 216866 84 - . . scaffold983 TRF Tandem_Repeat 218014 218847 1071 + . . scaffold983 TRF Tandem_Repeat 228174 229259 1766 + . . scaffold983 TRF Tandem_Repeat 228174 230359 2110 + . . scaffold983 TRF Tandem_Repeat 235707 235731 50 + . . scaffold983 TRF Tandem_Repeat 236639 236669 62 + . . scaffold983 TRF Tandem_Repeat 238920 238972 56 + . . scaffold983 TRF Tandem_Repeat 238929 238981 58 + . . scaffold983 GLEAN mRNA 244830 248843 1 - . ID=CGI_10014030; scaffold983 WUBlastX DNA_NOF 247470 247595 22 + . . scaffold983 WUBlastX DNA_NOF 247561 247995 32 + . . scaffold983 WUBlastX DNA_IS4EU 247648 247824 38 + . . scaffold983 WUBlastX DNA_NOF? 247678 247986 102 + . . scaffold983 GLEAN promoter 248844 249843 1 - . ID=CGI_10014030; scaffold983 TRF Tandem_Repeat 253163 253212 61 + . . scaffold983 TRF Tandem_Repeat 256500 256549 66 + . . scaffold983 TRF Tandem_Repeat 257177 257228 104 + . . scaffold983 GLEAN mRNA 270139 281545 1 - . ID=CGI_10014031; scaffold983 GLEAN promoter 271737 272736 0.959892 + . ID=CGI_10014032; scaffold983 GLEAN mRNA 272737 273284 0.959892 + . ID=CGI_10014032; scaffold983 GLEAN promoter 281546 282545 1 - . ID=CGI_10014031; scaffold983 TRF Tandem_Repeat 284986 285052 50 + . . scaffold983 TRF Tandem_Repeat 290119 290597 576 + . . scaffold983 GLEAN promoter 295352 296351 0.963039 + . ID=CGI_10014033; scaffold983 TRF Tandem_Repeat 295689 295787 58 + . . scaffold983 TRF Tandem_Repeat 295703 295847 218 + . . scaffold983 TRF Tandem_Repeat 295842 295991 169 + . . scaffold983 GLEAN mRNA 296352 305308 0.963039 + . ID=CGI_10014033; scaffold983 TRF Tandem_Repeat 307204 307989 976 + . . scaffold983 TRF Tandem_Repeat 308563 309281 644 + . . scaffold983 TRF Tandem_Repeat 309736 309878 85 + . . scaffold983 TRF Tandem_Repeat 309738 309987 68 + . . scaffold983 TRF Tandem_Repeat 310259 311754 1131 + . . scaffold983 TRF Tandem_Repeat 318455 320225 2443 + . . scaffold983 GLEAN promoter 329246 330245 0.998668 + . ID=CGI_10014034; scaffold983 GLEAN mRNA 330246 341232 0.998668 + . ID=CGI_10014034; scaffold983 GLEAN promoter 352704 353703 0.995128 + . ID=CGI_10014035; scaffold983 GLEAN mRNA 353704 360265 0.995128 + . ID=CGI_10014035; scaffold983 TRF Tandem_Repeat 354520 354565 92 + . . scaffold983 WUBlastX LINE_CR1 359846 360196 95 + . . scaffold983 WUBlastX LINE_L1-Tx1 363364 363987 138 + . . scaffold983 WUBlastX LINE_L1 363472 364290 31 + . . scaffold983 WUBlastX DNA_TcMar-Tc1 369484 369585 22 - . . scaffold983 WUBlastX DNA_TcMar-Tc1 369636 369770 26 - . . scaffold984 TRF Tandem_Repeat 192 232 64 + . . scaffold984 GLEAN promoter 1190 2189 0.999998 + . ID=CGI_10000576; scaffold984 TRF Tandem_Repeat 1356 1389 68 + . . scaffold984 GLEAN mRNA 2190 6762 0.999998 + . ID=CGI_10000576; scaffold984 WUBlastX LINE_L1-Tx1 3335 3736 64 + . . scaffold984 WUBlastX LINE_L1-Tx1 3347 3826 63 + . . scaffold985 GLEAN mRNA 11467 20534 0.996286 - . ID=CGI_10003138; scaffold985 GLEAN promoter 20535 21534 0.996286 - . ID=CGI_10003138; scaffold985 GLEAN mRNA 33622 39060 0.970737 - . ID=CGI_10003139; scaffold985 GLEAN promoter 39061 40060 0.970737 - . ID=CGI_10003139; scaffold985 GLEAN promoter 39261 40260 0.999415 + . ID=CGI_10003140; scaffold985 GLEAN mRNA 40261 41004 0.999415 + . ID=CGI_10003140; scaffold985 GLEAN mRNA 41796 55083 0.665333 - . ID=CGI_10003141; scaffold985 GLEAN promoter 55084 56083 0.665333 - . ID=CGI_10003141; scaffold985 GLEAN promoter 55795 56794 0.777732 + . ID=CGI_10003142; scaffold985 GLEAN mRNA 56795 58653 0.777732 + . ID=CGI_10003142; scaffold985 GLEAN mRNA 60534 63774 0.777738 - . ID=CGI_10003143; scaffold985 GLEAN promoter 63775 64606 0.777738 - . ID=CGI_10003143; scaffold986 GLEAN mRNA 18 4671 0.544739 - . ID=CGI_10009955; scaffold986 GLEAN promoter 4672 5671 0.544739 - . ID=CGI_10009955; scaffold986 TRF Tandem_Repeat 5156 5213 107 + . . scaffold986 TRF Tandem_Repeat 9840 9889 91 + . . scaffold986 TRF Tandem_Repeat 11863 12499 824 + . . scaffold986 GLEAN promoter 15404 16403 0.247215 + . ID=CGI_10009956; scaffold986 GLEAN mRNA 16404 29421 0.247215 + . ID=CGI_10009956; scaffold986 TRF Tandem_Repeat 23085 23124 80 + . . scaffold986 GLEAN promoter 29562 30561 0.15443 + . ID=CGI_10009957; scaffold986 GLEAN mRNA 30562 55582 0.15443 + . ID=CGI_10009957; scaffold986 TRF Tandem_Repeat 42345 42398 99 + . . scaffold986 WUBlastX DNA_hAT-Ac 46142 46516 38 + . . scaffold986 WUBlastX DNA_hAT-Ac 46590 47048 157 + . . scaffold986 WUBlastX DNA_hAT-Ac 46677 47051 187 + . . scaffold986 TRF Tandem_Repeat 49037 49089 97 + . . scaffold986 WUBlastX DNA_TcMar-Tc1 52551 52802 76 - . . scaffold986 WUBlastX LINE_RTE-X 59203 59496 67 + . . scaffold986 WUBlastX LINE_RTE-X 59257 59520 81 + . . scaffold986 GLEAN promoter 67286 68285 0.618241 + . ID=CGI_10009958; scaffold986 GLEAN mRNA 68286 68873 0.618241 + . ID=CGI_10009958; scaffold986 TRF Tandem_Repeat 80843 80897 65 + . . scaffold986 TRF Tandem_Repeat 80846 80901 71 + . . scaffold986 TRF Tandem_Repeat 88291 89085 1236 + . . scaffold986 TRF Tandem_Repeat 94603 94649 85 + . . scaffold986 WUBlastX LINE_L1 99723 100412 37 + . . scaffold986 WUBlastX LINE_L1 99828 100487 220 + . . scaffold986 WUBlastX LINE_RTE-X 100524 100634 30 + . . scaffold986 WUBlastX LINE_RTE-X 100565 101236 132 + . . scaffold986 WUBlastX LINE_RTE-X 100682 101320 140 + . . scaffold986 WUBlastX LINE_RTE-X 100703 101236 187 + . . scaffold986 WUBlastX LINE_L1 102002 102076 24 + . . scaffold986 WUBlastX LINE_RTE-X 102014 102670 39 + . . scaffold986 WUBlastX LINE_RTE-X 102140 103231 312 + . . scaffold986 WUBlastX LINE_RTE-X 102335 103276 374 + . . scaffold986 WUBlastX LINE_L2 104191 104472 42 + . . scaffold986 WUBlastX LINE_RTE-X 104263 104508 109 + . . scaffold986 WUBlastX LINE_RTE-X 104263 104451 114 + . . scaffold986 WUBlastX LINE_RTE-X 104502 104669 107 + . . scaffold986 WUBlastX LINE_RTE-X 104684 105583 169 + . . scaffold986 WUBlastX LINE_RTE-X 104933 105703 96 + . . scaffold986 TRF Tandem_Repeat 112419 112793 626 + . . scaffold986 TRF Tandem_Repeat 113228 113261 68 + . . scaffold986 TRF Tandem_Repeat 122755 122808 108 + . . scaffold986 WUBlastX DNA_PiggyBac 125470 125661 40 + . . scaffold986 WUBlastX DNA_PiggyBac 126245 126367 57 + . . scaffold986 GLEAN promoter 126754 127753 0.953283 + . ID=CGI_10009959; scaffold986 GLEAN mRNA 127754 134005 0.953283 + . ID=CGI_10009959; scaffold986 TRF Tandem_Repeat 128189 128417 166 + . . scaffold986 TRF Tandem_Repeat 128197 128453 121 + . . scaffold986 TRF Tandem_Repeat 128631 128774 120 + . . scaffold986 TRF Tandem_Repeat 128631 128922 221 + . . scaffold986 TRF Tandem_Repeat 128695 128932 245 + . . scaffold986 TRF Tandem_Repeat 131192 131352 205 + . . scaffold986 GLEAN promoter 134296 135295 0.877811 + . ID=CGI_10009960; scaffold986 GLEAN mRNA 135296 141072 0.877811 + . ID=CGI_10009960; scaffold986 WUBlastX DNA_Harbinger 136279 136446 49 + . . scaffold986 WUBlastX DNA_Harbinger 137234 137431 61 - . . scaffold986 WUBlastX DNA_Harbinger 137571 137768 117 - . . scaffold986 WUBlastX DNA_Harbinger 137804 137941 20 - . . scaffold986 WUBlastX DNA_Harbinger 137831 137971 51 - . . scaffold986 WUBlastX DNA_Harbinger 137855 137941 53 - . . scaffold986 TRF Tandem_Repeat 138060 138096 74 + . . scaffold986 WUBlastX DNA_Harbinger 138104 138244 20 - . . scaffold986 WUBlastX DNA_Harbinger 138128 138277 55 - . . scaffold986 WUBlastX DNA_Harbinger 138128 138250 82 - . . scaffold986 WUBlastX DNA_Harbinger 138760 139170 99 - . . scaffold986 WUBlastX DNA_Harbinger 138790 139134 131 - . . scaffold986 GLEAN promoter 145267 146266 0.999418 + . ID=CGI_10009961; scaffold986 GLEAN mRNA 146267 146659 0.999418 + . ID=CGI_10009961; scaffold986 WUBlastX DNA_Crypton 151562 151639 41 + . . scaffold986 WUBlastX DNA_Crypton 152148 152291 76 + . . scaffold986 TRF Tandem_Repeat 161838 161901 110 + . . scaffold986 TRF Tandem_Repeat 174987 175037 50 + . . scaffold986 GLEAN promoter 178074 179073 1 + . ID=CGI_10009962; scaffold986 GLEAN mRNA 179074 179466 1 + . ID=CGI_10009962; scaffold986 WUBlastX DNA_Crypton 184009 184233 31 - . . scaffold986 WUBlastX DNA_Crypton 184768 184827 28 - . . scaffold986 WUBlastX DNA_TcMar-Tc1 186809 187657 291 + . . scaffold986 WUBlastX DNA_TcMar-Tc1 187657 187788 69 + . . scaffold986 TRF Tandem_Repeat 188636 189430 1016 + . . scaffold986 TRF Tandem_Repeat 198883 199285 608 + . . scaffold986 GLEAN promoter 202294 203293 0.999984 + . ID=CGI_10009963; scaffold986 TRF Tandem_Repeat 202551 202584 59 + . . scaffold986 GLEAN mRNA 203294 203728 0.999984 + . ID=CGI_10009963; scaffold986 GLEAN mRNA 206054 209609 0.914142 - . ID=CGI_10009964; scaffold986 TRF Tandem_Repeat 207101 207125 50 + . . scaffold986 GLEAN promoter 209610 210609 0.914142 - . ID=CGI_10009964; scaffold986 TRF Tandem_Repeat 210163 211271 1567 + . . scaffold986 TRF Tandem_Repeat 211295 211353 82 + . . scaffold986 TRF Tandem_Repeat 211302 211353 77 + . . scaffold986 TRF Tandem_Repeat 223572 223744 97 + . . scaffold986 TRF Tandem_Repeat 223572 223662 86 + . . scaffold986 TRF Tandem_Repeat 223575 223744 130 + . . scaffold986 TRF Tandem_Repeat 223663 223741 108 + . . scaffold986 TRF Tandem_Repeat 224124 224254 138 + . . scaffold986 TRF Tandem_Repeat 224148 224254 110 + . . scaffold986 TRF Tandem_Repeat 224321 224540 372 + . . scaffold986 TRF Tandem_Repeat 224989 225044 67 + . . scaffold986 TRF Tandem_Repeat 224998 225044 67 + . . scaffold986 GLEAN mRNA 229802 234961 0.889891 - . ID=CGI_10009965; scaffold986 TRF Tandem_Repeat 230698 231089 741 + . . scaffold986 WUBlastX LINE_RTE-X 232752 233096 21 - . . scaffold986 WUBlastX LINE_RTE-X 232818 233171 72 - . . scaffold986 WUBlastX LINE_RTE-BovB 232839 233090 74 - . . scaffold986 WUBlastX LINE_Jockey 233180 233962 99 - . . scaffold986 WUBlastX LINE_L1 233183 233623 112 - . . scaffold986 WUBlastX LINE_L1 233183 233791 106 - . . scaffold986 WUBlastX LINE_Proto2 233195 234226 99 - . . scaffold986 GLEAN promoter 234962 235961 0.889891 - . ID=CGI_10009965; scaffold987 GLEAN mRNA 4312 14358 0.999988 - . ID=CGI_10015832; scaffold987 GLEAN promoter 14359 15358 0.999988 - . ID=CGI_10015832; scaffold987 GLEAN promoter 15667 16666 0.993507 + . ID=CGI_10015833; scaffold987 GLEAN mRNA 16667 16916 0.993507 + . ID=CGI_10015833; scaffold987 WUBlastX LINE_RTE-X 18241 18444 111 + . . scaffold987 WUBlastX LINE_RTE-X 18244 18480 63 + . . scaffold987 TRF Tandem_Repeat 21068 21113 67 + . . scaffold987 TRF Tandem_Repeat 21138 21209 83 + . . scaffold987 GLEAN mRNA 23397 23987 1 - . ID=CGI_10015834; scaffold987 GLEAN promoter 23890 24889 0.997296 + . ID=CGI_10015835; scaffold987 GLEAN promoter 23988 24987 1 - . ID=CGI_10015834; scaffold987 GLEAN mRNA 24890 33595 0.997296 + . ID=CGI_10015835; scaffold987 GLEAN promoter 40359 41358 0.693793 + . ID=CGI_10015836; scaffold987 GLEAN mRNA 41359 49158 0.693793 + . ID=CGI_10015836; scaffold987 TRF Tandem_Repeat 54353 54401 98 + . . scaffold987 WUBlastX LINE_L1 72365 72649 37 - . . scaffold987 WUBlastX LINE_L1-Tx1 72633 73052 93 - . . scaffold987 WUBlastX LINE_L1-Tx1 73115 74455 90 - . . scaffold987 WUBlastX LINE_L1 73124 74101 314 - . . scaffold987 WUBlastX LINE_L1 75563 75724 61 - . . scaffold987 WUBlastX LINE_L1-Tx1 75572 75874 56 - . . scaffold987 WUBlastX LINE_L1 75831 76013 32 - . . scaffold987 WUBlastX LINE_L1 76024 76305 27 - . . scaffold987 GLEAN mRNA 76050 89119 0.967174 - . ID=CGI_10015837; scaffold987 WUBlastX LINE_L1-Tx1 76117 76371 32 - . . scaffold987 WUBlastX LINE_L1-Tx1 76361 76501 55 - . . scaffold987 WUBlastX LINE_L1-Tx1 76494 76724 84 - . . scaffold987 TRF Tandem_Repeat 77262 77317 112 + . . scaffold987 WUBlastX LINE_CR1 77887 78513 147 - . . scaffold987 WUBlastX LINE_CR1-L2 80403 80573 81 + . . scaffold987 WUBlastX LINE_CR1-L2 81285 81989 199 + . . scaffold987 WUBlastX LINE_L2 81483 81938 246 + . . scaffold987 WUBlastX LINE_CR1 81552 82067 87 + . . scaffold987 WUBlastX LINE_L2 81570 82166 80 + . . scaffold987 TRF Tandem_Repeat 83548 83589 84 + . . scaffold987 WUBlastX LTR_DIRS 84972 86003 342 - . . scaffold987 WUBlastX LTR_DIRS 84987 85763 425 - . . scaffold987 WUBlastX LTR_DIRS 85985 86347 275 - . . scaffold987 WUBlastX LTR_DIRS 87137 88114 422 - . . scaffold987 WUBlastX LTR_DIRS 87137 87964 622 - . . scaffold987 WUBlastX LTR_Gypsy 88195 88248 27 - . . scaffold987 WUBlastX LTR_DIRS 88245 88679 95 - . . scaffold987 GLEAN promoter 89120 90119 0.967174 - . ID=CGI_10015837; scaffold987 TRF Tandem_Repeat 89652 89768 162 + . . scaffold987 TRF Tandem_Repeat 89773 89872 119 + . . scaffold987 GLEAN promoter 90191 91190 0.990766 + . ID=CGI_10015838; scaffold987 GLEAN mRNA 91191 107423 0.990766 + . ID=CGI_10015838; scaffold987 TRF Tandem_Repeat 92402 92444 86 + . . scaffold987 GLEAN mRNA 97783 106868 1 - . ID=CGI_10015839; scaffold987 TRF Tandem_Repeat 98073 98509 779 + . . scaffold987 GLEAN promoter 106869 107868 1 - . ID=CGI_10015839; scaffold987 GLEAN mRNA 111206 157528 0.998975 - . ID=CGI_10015840; scaffold987 TRF Tandem_Repeat 130466 130512 76 + . . scaffold987 TRF Tandem_Repeat 136986 138363 865 + . . scaffold987 GLEAN promoter 157529 158528 0.998975 - . ID=CGI_10015840; scaffold987 TRF Tandem_Repeat 164891 164968 122 + . . scaffold987 TRF Tandem_Repeat 165118 165787 963 + . . scaffold987 TRF Tandem_Repeat 169042 169129 68 + . . scaffold987 GLEAN promoter 174024 175023 0.965913 + . ID=CGI_10015841; scaffold987 GLEAN mRNA 175024 176004 0.965913 + . ID=CGI_10015841; scaffold987 TRF Tandem_Repeat 181132 181954 1073 + . . scaffold987 GLEAN promoter 195887 196886 0.980389 + . ID=CGI_10015842; scaffold987 GLEAN mRNA 196887 200691 0.980389 + . ID=CGI_10015842; scaffold987 WUBlastX LTR_Gypsy 201854 203449 629 - . . scaffold987 WUBlastX LTR_Gypsy 201857 203140 986 - . . scaffold987 WUBlastX LTR_Gypsy 203228 203644 210 - . . scaffold987 WUBlastX LTR_Gypsy 203252 203722 118 - . . scaffold987 WUBlastX LTR_Gypsy 203671 204564 94 - . . scaffold987 WUBlastX LTR_Gypsy-Cigr 203881 204627 200 - . . scaffold987 WUBlastX LTR_Gypsy 204109 204594 203 - . . scaffold987 GLEAN mRNA 205825 212808 0.584899 - . ID=CGI_10015843; scaffold987 GLEAN promoter 212809 213808 0.584899 - . ID=CGI_10015843; scaffold987 GLEAN promoter 238443 239442 1 + . ID=CGI_10015844; scaffold987 GLEAN mRNA 239443 242464 1 + . ID=CGI_10015844; scaffold987 TRF Tandem_Repeat 240128 240197 133 + . . scaffold987 GLEAN mRNA 240320 257187 0.498541 - . ID=CGI_10015845; scaffold987 TRF Tandem_Repeat 241309 241341 66 + . . scaffold987 TRF Tandem_Repeat 255355 255425 135 + . . scaffold987 TRF Tandem_Repeat 256840 256880 82 + . . scaffold987 GLEAN promoter 256903 257902 1 + . ID=CGI_10015846; scaffold987 GLEAN promoter 257188 258187 0.498541 - . ID=CGI_10015845; scaffold987 GLEAN mRNA 257903 264616 1 + . ID=CGI_10015846; scaffold987 GLEAN mRNA 266209 273004 0.999743 - . ID=CGI_10015847; scaffold987 GLEAN promoter 273005 274004 0.999743 - . ID=CGI_10015847; scaffold987 GLEAN promoter 278879 279878 1 + . ID=CGI_10015848; scaffold987 GLEAN mRNA 279879 286642 1 + . ID=CGI_10015848; scaffold987 GLEAN promoter 290316 291315 1 + . ID=CGI_10015850; scaffold987 GLEAN mRNA 290322 290752 1 - . ID=CGI_10015849; scaffold987 GLEAN promoter 290753 291752 1 - . ID=CGI_10015849; scaffold987 GLEAN mRNA 291316 291957 1 + . ID=CGI_10015850; scaffold987 GLEAN promoter 295330 296329 0.858368 + . ID=CGI_10015851; scaffold987 GLEAN mRNA 296330 356695 0.858368 + . ID=CGI_10015851; scaffold987 TRF Tandem_Repeat 306680 306915 386 + . . scaffold987 GLEAN mRNA 308699 310005 0.556987 - . ID=CGI_10015852; scaffold987 GLEAN promoter 310006 311005 0.556987 - . ID=CGI_10015852; scaffold987 TRF Tandem_Repeat 310625 310811 164 + . . scaffold987 TRF Tandem_Repeat 311619 311693 89 + . . scaffold987 GLEAN mRNA 313449 313637 0.649369 - . ID=CGI_10015853; scaffold987 GLEAN promoter 313638 314637 0.649369 - . ID=CGI_10015853; scaffold987 TRF Tandem_Repeat 332962 334555 1796 + . . scaffold987 TRF Tandem_Repeat 374097 374138 66 + . . scaffold987 TRF Tandem_Repeat 376730 377385 867 + . . scaffold987 TRF Tandem_Repeat 380230 380401 143 + . . scaffold987 TRF Tandem_Repeat 380376 380495 132 + . . scaffold987 GLEAN promoter 381260 382259 0.990349 + . ID=CGI_10015854; scaffold987 GLEAN mRNA 382260 388893 0.990349 + . ID=CGI_10015854; scaffold987 TRF Tandem_Repeat 401009 401051 86 + . . scaffold987 GLEAN promoter 411796 412795 0.5 + . ID=CGI_10015855; scaffold987 GLEAN mRNA 412796 421640 0.5 + . ID=CGI_10015855; scaffold987 GLEAN mRNA 425100 436817 0.734331 - . ID=CGI_10015856; scaffold987 GLEAN promoter 436818 437817 0.734331 - . ID=CGI_10015856; scaffold987 TRF Tandem_Repeat 436926 436955 60 + . . scaffold987 GLEAN promoter 439745 440744 1 + . ID=CGI_10015857; scaffold987 GLEAN mRNA 440745 443054 1 + . ID=CGI_10015857; scaffold99 GLEAN promoter 21545 22544 0.404855 + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 22308 22342 70 + . . scaffold99 GLEAN mRNA 22545 38354 0.404855 + . ID=CGI_10021189; scaffold99 TRF Tandem_Repeat 29750 29797 96 + . . scaffold99 WUBlastX LINE_RTE-X 31401 31517 52 - . . scaffold99 WUBlastX LINE_R1 31558 31722 27 - . . scaffold99 WUBlastX LINE_CR1-L2 31585 32076 129 - . . scaffold99 WUBlastX LINE_L2 32079 32372 175 - . . scaffold99 WUBlastX LINE_CR1-L2 32382 33008 233 - . . scaffold99 WUBlastX LINE_L2 32487 33020 359 - . . scaffold99 WUBlastX LINE_L2 32487 33242 141 - . . scaffold99 TRF Tandem_Repeat 34990 35155 185 + . . scaffold99 TRF Tandem_Repeat 35001 35241 215 + . . scaffold99 TRF Tandem_Repeat 36758 36980 215 + . . scaffold99 TRF Tandem_Repeat 36758 36980 161 + . . scaffold99 TRF Tandem_Repeat 37333 37425 177 + . . scaffold99 TRF Tandem_Repeat 63095 63134 71 + . . scaffold99 TRF Tandem_Repeat 63198 63239 75 + . . scaffold99 WUBlastX LINE_CR1-L2 66804 67127 62 - . . scaffold99 WUBlastX LINE_CR1-L2 67199 67834 325 - . . scaffold99 WUBlastX LINE_CR1-L2 67822 68226 362 - . . scaffold99 WUBlastX LINE_CR1 67825 68373 177 - . . scaffold99 WUBlastX LINE_L1 68562 68648 28 - . . scaffold99 WUBlastX LTR_DIRS 68607 68675 29 - . . scaffold99 WUBlastX LTR_DIRS 68996 69274 57 - . . scaffold99 WUBlastX LTR_DIRS 69283 69327 24 - . . scaffold99 WUBlastX LTR_DIRS 69327 69470 62 - . . scaffold99 WUBlastX LTR_DIRS 69677 70036 80 - . . scaffold99 TRF Tandem_Repeat 75762 75811 100 + . . scaffold99 GLEAN mRNA 98263 105521 0.99998 - . ID=CGI_10021190; scaffold99 TRF Tandem_Repeat 103776 104176 173 + . . scaffold99 TRF Tandem_Repeat 103778 103933 109 + . . scaffold99 TRF Tandem_Repeat 103939 104176 163 + . . scaffold99 TRF Tandem_Repeat 104398 104574 124 + . . scaffold99 GLEAN promoter 105522 106521 0.99998 - . ID=CGI_10021190; scaffold99 GLEAN mRNA 106780 117604 0.544851 - . ID=CGI_10021191; scaffold99 WUBlastX DNA_IS4EU 107897 108253 100 + . . scaffold99 WUBlastX DNA_Kolobok-IS4 107906 108352 83 + . . scaffold99 WUBlastX DNA_IS4EU 108050 108427 70 + . . scaffold99 GLEAN promoter 117605 118604 0.544851 - . ID=CGI_10021191; scaffold99 WUBlastX DNA_Helitron 133043 133633 22 + . . scaffold99 WUBlastX RC_Helitron 133043 133234 35 + . . scaffold99 WUBlastX RC_Helitron 133655 139606 1808 + . . scaffold99 WUBlastX LINE_L2 139007 139717 43 + . . scaffold99 TRF Tandem_Repeat 143048 143096 64 + . . scaffold99 WUBlastX LINE_RTE-X 148685 150121 472 - . . scaffold99 WUBlastX LINE_RTE-BovB 150121 150711 139 - . . scaffold99 WUBlastX LINE_RTE-X 150127 150621 314 - . . scaffold99 TRF Tandem_Repeat 156971 157018 87 + . . scaffold99 TRF Tandem_Repeat 157038 157080 63 + . . scaffold99 TRF Tandem_Repeat 157361 157412 50 + . . scaffold99 WUBlastX LTR_Pao 166025 166081 20 - . . scaffold99 WUBlastX LTR_Pao 166161 166265 31 - . . scaffold99 WUBlastX LTR_Pao 166279 166737 354 - . . scaffold99 WUBlastX LTR_Pao 166729 169458 546 - . . scaffold99 WUBlastX LTR_Pao 166729 167940 896 - . . scaffold99 WUBlastX LTR_Pao 167215 168951 795 - . . scaffold99 WUBlastX LTR_Pao 169030 169590 20 - . . scaffold99 WUBlastX LINE_Penelope 177450 177752 50 - . . scaffold99 WUBlastX LINE_Penelope 177528 177845 80 - . . scaffold99 TRF Tandem_Repeat 177856 177898 86 + . . scaffold99 WUBlastX DNA_Sola 178605 178949 87 - . . scaffold99 WUBlastX DNA_Sola 178671 178949 110 - . . scaffold99 WUBlastX DNA_Sola 178954 180357 561 - . . scaffold99 WUBlastX DNA_Sola 179236 180636 351 - . . scaffold99 WUBlastX LINE_Penelope 182578 182937 25 - . . scaffold99 WUBlastX LINE_Penelope 182653 183054 158 - . . scaffold99 WUBlastX LINE_Penelope 182773 183180 113 - . . scaffold99 WUBlastX LINE_Penelope 183136 183426 114 + . . scaffold99 TRF Tandem_Repeat 203073 203494 452 + . . scaffold99 TRF Tandem_Repeat 203092 203494 430 + . . scaffold99 GLEAN mRNA 203484 219697 0.578574 - . ID=CGI_10021192; scaffold99 GLEAN promoter 219698 220697 0.578574 - . ID=CGI_10021192; scaffold99 GLEAN promoter 225560 226559 1 + . ID=CGI_10021193; scaffold99 GLEAN mRNA 226560 229058 1 + . ID=CGI_10021193; scaffold99 GLEAN mRNA 230776 232638 0.997456 - . ID=CGI_10021194; scaffold99 TRF Tandem_Repeat 232469 232509 82 + . . scaffold99 GLEAN promoter 232639 233638 0.997456 - . ID=CGI_10021194; scaffold99 TRF Tandem_Repeat 233987 234027 82 + . . scaffold99 GLEAN promoter 234492 235491 0.649382 + . ID=CGI_10021195; scaffold99 GLEAN mRNA 235492 241625 0.649382 + . ID=CGI_10021195; scaffold99 TRF Tandem_Repeat 235700 235850 196 + . . scaffold99 TRF Tandem_Repeat 237245 237301 114 + . . scaffold99 WUBlastX DNA_MuDR 240673 240756 31 + . . scaffold99 WUBlastX DNA_MuDR 240685 240960 26 + . . scaffold99 WUBlastX DNA_MuDR 241023 241421 62 + . . scaffold99 WUBlastX DNA_MuDR 241083 241424 75 + . . scaffold99 WUBlastX DNA_MuDR 241548 241661 34 + . . scaffold99 GLEAN mRNA 242063 243571 1 - . ID=CGI_10021196; scaffold99 TRF Tandem_Repeat 243401 243447 85 + . . scaffold99 GLEAN promoter 243572 244571 1 - . ID=CGI_10021196; scaffold99 TRF Tandem_Repeat 245094 245280 284 + . . scaffold99 TRF Tandem_Repeat 246558 246622 112 + . . scaffold99 WUBlastX LINE_L1-Tx1 256791 257543 176 + . . scaffold99 WUBlastX LINE_L1-Tx1 257849 258244 24 + . . scaffold99 WUBlastX LINE_L1-Tx1 257999 258556 151 + . . scaffold99 WUBlastX DNA_Maverick 259641 259883 52 - . . scaffold99 WUBlastX LTR_Gypsy 262603 262668 34 - . . scaffold99 WUBlastX LTR_Gypsy 262675 263751 229 - . . scaffold99 WUBlastX LTR_Gypsy 262927 263775 299 - . . scaffold99 WUBlastX LTR_ERV1 262927 263970 154 - . . scaffold99 WUBlastX LTR_Gypsy 264103 264177 20 - . . scaffold99 TRF Tandem_Repeat 266233 266366 100 + . . scaffold99 WUBlastX DNA_Maverick 266985 267104 23 + . . scaffold99 WUBlastX DNA_Maverick 267063 267374 53 + . . scaffold99 WUBlastX LINE_L1-Tx1 268582 269019 124 - . . scaffold99 WUBlastX LINE_L1 268750 269121 45 - . . scaffold99 GLEAN mRNA 269898 281100 0.990329 - . ID=CGI_10021197; scaffold99 TRF Tandem_Repeat 271257 271295 78 + . . scaffold99 TRF Tandem_Repeat 271768 271830 117 + . . scaffold99 TRF Tandem_Repeat 272199 272255 105 + . . scaffold99 GLEAN promoter 281101 282100 0.990329 - . ID=CGI_10021197; scaffold99 GLEAN promoter 284525 285524 0.999372 + . ID=CGI_10021198; scaffold99 GLEAN mRNA 285525 285902 0.999372 + . ID=CGI_10021198; scaffold99 WUBlastX DNA_Sola 295165 295380 48 + . . scaffold99 WUBlastX DNA_Sola 295530 295616 43 + . . scaffold99 TRF Tandem_Repeat 301144 302096 1280 + . . scaffold99 WUBlastX LTR_Ngaro 304890 305000 47 - . . scaffold99 WUBlastX LTR_Ngaro 304908 304988 58 - . . scaffold99 WUBlastX LTR_Ngaro 305005 305223 139 - . . scaffold99 WUBlastX LTR_Ngaro 305225 305812 181 - . . scaffold99 WUBlastX LTR_Ngaro 305345 305812 182 - . . scaffold99 WUBlastX LTR_Ngaro 305818 306087 161 - . . scaffold99 WUBlastX LTR_Ngaro 306062 307438 1034 - . . scaffold99 WUBlastX LTR_Ngaro 307628 308074 154 - . . scaffold99 WUBlastX LTR_Ngaro 307661 308176 54 - . . scaffold99 WUBlastX RC_Helitron 313231 313344 26 - . . scaffold99 WUBlastX RC_Helitron 313397 313813 65 - . . scaffold99 WUBlastX DNA_TcMar-Tc2 314001 314126 34 + . . scaffold99 WUBlastX DNA_TcMar-Tc2 314144 314485 111 + . . scaffold99 WUBlastX DNA_TcMar-Tc2 314204 314659 97 + . . scaffold99 WUBlastX RC_Helitron 314995 315762 41 - . . scaffold99 WUBlastX RC_Helitron 315148 316419 388 - . . scaffold99 WUBlastX RC_Helitron 315199 316866 211 - . . scaffold99 WUBlastX RC_Helitron 317080 317895 54 - . . scaffold99 TRF Tandem_Repeat 318973 319005 57 + . . scaffold99 TRF Tandem_Repeat 328119 328151 66 + . . scaffold99 GLEAN mRNA 330566 346310 0.999978 - . ID=CGI_10021200; scaffold99 GLEAN promoter 345755 346754 0.999992 + . ID=CGI_10021201; scaffold99 GLEAN promoter 346311 347310 0.999978 - . ID=CGI_10021200; scaffold99 GLEAN mRNA 346755 358299 0.999992 + . ID=CGI_10021201; scaffold99 TRF Tandem_Repeat 355319 355379 122 + . . scaffold99 GLEAN promoter 357334 358333 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_CR1 357388 357966 167 + . . scaffold99 WUBlastX LINE_I 357583 358281 35 + . . scaffold99 GLEAN mRNA 358334 365567 0.999675 + . ID=CGI_10021202; scaffold99 WUBlastX LINE_L1-Tx1 358665 359084 177 + . . scaffold99 WUBlastX LINE_L1-Tx1 358707 360314 163 + . . scaffold99 WUBlastX LINE_L1-Tx1 359682 360329 314 + . . scaffold99 WUBlastX LINE_L1-Tx1 360328 361449 246 + . . scaffold99 WUBlastX LINE_L1-Tx1 360328 361275 338 + . . scaffold99 WUBlastX LINE_L1-Tx1 361947 362120 30 + . . scaffold99 WUBlastX LINE_L1-Tx1 361959 362267 28 + . . scaffold99 GLEAN mRNA 368029 375712 1 - . ID=CGI_10021203; scaffold99 GLEAN promoter 375713 376712 1 - . ID=CGI_10021203; scaffold99 WUBlastX LTR_Gypsy-Cigr 379896 380180 65 + . . scaffold99 TRF Tandem_Repeat 382426 382460 61 + . . scaffold99 GLEAN promoter 383620 384619 0.673512 + . ID=CGI_10021205; scaffold99 GLEAN mRNA 384620 403833 0.673512 + . ID=CGI_10021205; scaffold99 GLEAN mRNA 400909 430905 0.942648 - . ID=CGI_10021206; scaffold99 TRF Tandem_Repeat 406444 406521 138 + . . scaffold99 TRF Tandem_Repeat 420141 420188 71 + . . scaffold99 GLEAN promoter 430906 431905 0.942648 - . ID=CGI_10021206; scaffold99 TRF Tandem_Repeat 432567 432611 54 + . . scaffold99 TRF Tandem_Repeat 434454 434517 92 + . . scaffold99 WUBlastX LINE_CR1 436370 436420 24 + . . scaffold99 WUBlastX LINE_I-Nimb 436657 436881 28 + . . scaffold99 WUBlastX LINE_RTE-X 436711 437043 65 + . . scaffold99 WUBlastX LINE_L2 436968 437594 127 + . . scaffold99 WUBlastX LINE_RTE-X 437088 437594 264 + . . scaffold99 WUBlastX LINE_L1-Tx1 437088 437765 63 + . . scaffold99 WUBlastX LINE_I-Nimb 437208 437663 72 + . . scaffold99 GLEAN mRNA 444016 444273 0.946482 - . ID=CGI_10021207; scaffold99 GLEAN promoter 444274 445273 0.946482 - . ID=CGI_10021207; scaffold99 WUBlastX LTR_Gypsy 447158 447457 22 - . . scaffold99 WUBlastX LTR_Gypsy 447173 447409 79 - . . scaffold99 WUBlastX LTR_Gypsy 447459 448247 225 - . . scaffold99 WUBlastX LTR_Ngaro 453229 453549 111 + . . scaffold99 WUBlastX LTR_Ngaro 453298 453549 127 + . . scaffold99 TRF Tandem_Repeat 454125 455058 1183 + . . scaffold99 TRF Tandem_Repeat 458264 458296 66 + . . scaffold99 GLEAN mRNA 460652 481021 0.928915 - . ID=CGI_10021208; scaffold99 WUBlastX DNA_Kolobok-IS4 463126 463719 90 - . . scaffold99 WUBlastX DNA_IS4EU 463138 463443 117 - . . scaffold99 GLEAN promoter 481022 482021 0.928915 - . ID=CGI_10021208; scaffold99 TRF Tandem_Repeat 499036 499134 198 + . . scaffold99 TRF Tandem_Repeat 499132 499163 64 + . . scaffold99 GLEAN promoter 506439 507438 0.618241 + . ID=CGI_10021209; scaffold99 GLEAN mRNA 507439 507609 0.618241 + . ID=CGI_10021209; scaffold99 WUBlastX DNA_Kolobok 512028 512270 133 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 522275 523006 320 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 522967 523779 717 - . . scaffold99 GLEAN promoter 523280 524279 0.618241 + . ID=CGI_10021210; scaffold99 WUBlastX LTR_Gypsy-Troyk 523778 524101 368 - . . scaffold99 WUBlastX DNA_Harbinger 524274 524489 57 + . . scaffold99 GLEAN mRNA 524280 524582 0.618241 + . ID=CGI_10021210; scaffold99 WUBlastX LTR_Gypsy-Troyk 525511 526239 753 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 526235 527149 342 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 527161 527418 138 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 527206 527847 248 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 527849 527956 58 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 527958 528125 140 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 528125 528409 108 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 528265 528660 165 - . . scaffold99 WUBlastX LTR_Gypsy-Troyk 529150 529368 65 - . . scaffold99 WUBlastX LTR_Gypsy 529252 530133 359 - . . scaffold99 TRF Tandem_Repeat 531037 531090 65 + . . scaffold99 TRF Tandem_Repeat 531043 531086 61 + . . scaffold99 TRF Tandem_Repeat 531263 532622 1900 + . . scaffold99 GLEAN promoter 533300 534299 0.999026 + . ID=CGI_10021211; scaffold99 GLEAN mRNA 534300 547447 0.999026 + . ID=CGI_10021211; scaffold99 TRF Tandem_Repeat 534847 535816 1730 + . . scaffold99 TRF Tandem_Repeat 544370 544399 51 + . . scaffold99 TRF Tandem_Repeat 544569 545383 1258 + . . scaffold99 TRF Tandem_Repeat 545560 546558 1414 + . . scaffold99 WUBlastX LINE_L2 554779 554880 21 - . . scaffold99 WUBlastX LINE_RTE-X 555296 556234 288 - . . scaffold99 WUBlastX LINE_Proto2 555302 557521 125 - . . scaffold99 WUBlastX LINE_I 555383 556429 259 - . . scaffold99 TRF Tandem_Repeat 557964 558068 124 + . . scaffold99 TRF Tandem_Repeat 558857 558944 88 + . . scaffold99 TRF Tandem_Repeat 559037 559215 164 + . . scaffold99 TRF Tandem_Repeat 559084 559216 99 + . . scaffold99 TRF Tandem_Repeat 559278 559370 114 + . . scaffold99 WUBlastX LINE_R2-Hero 571899 572093 151 - . . scaffold99 WUBlastX LINE_R2-Hero 572379 572495 89 + . . scaffold99 WUBlastX LINE_R2-Hero 572480 572692 97 + . . scaffold99 WUBlastX LINE_R2-Hero 572489 572731 87 + . . scaffold99 GLEAN promoter 574342 575341 0.999572 + . ID=CGI_10021212; scaffold99 GLEAN mRNA 575342 578668 0.999572 + . ID=CGI_10021212; scaffold99 GLEAN mRNA 582311 589592 0.702385 - . ID=CGI_10021213; scaffold99 GLEAN promoter 589593 590592 0.702385 - . ID=CGI_10021213; scaffold99 GLEAN promoter 590642 591641 0.948988 + . ID=CGI_10021214; scaffold99 GLEAN mRNA 591642 622309 0.948988 + . ID=CGI_10021214; scaffold99 GLEAN mRNA 601112 622168 1 - . ID=CGI_10021215; scaffold99 TRF Tandem_Repeat 603547 604840 1879 + . . scaffold99 TRF Tandem_Repeat 605415 605510 176 + . . scaffold99 TRF Tandem_Repeat 609725 609754 51 + . . scaffold99 WUBlastX LINE_L2 610600 610878 49 - . . scaffold99 GLEAN promoter 622169 623168 1 - . ID=CGI_10021215; scaffold99 GLEAN promoter 627110 628109 0.999675 + . ID=CGI_10021217; scaffold99 GLEAN mRNA 628110 642607 0.999675 + . ID=CGI_10021217; scaffold99 TRF Tandem_Repeat 628407 628471 51 + . . scaffold99 GLEAN mRNA 644788 656030 0.999676 - . ID=CGI_10021218; scaffold99 GLEAN promoter 656031 657030 0.999676 - . ID=CGI_10021218; scaffold99 GLEAN promoter 658556 659555 0.999996 + . ID=CGI_10021219; scaffold99 GLEAN mRNA 659556 676277 0.999996 + . ID=CGI_10021219; scaffold990 GLEAN mRNA 41248 43218 0.99961 - . ID=CGI_10002683; scaffold990 GLEAN promoter 43219 44218 0.99961 - . ID=CGI_10002683; scaffold990 GLEAN mRNA 45419 47552 0.999507 - . ID=CGI_10002684; scaffold990 GLEAN promoter 47553 48552 0.999507 - . ID=CGI_10002684; scaffold991 TRF Tandem_Repeat 301 326 52 + . . scaffold991 WUBlastX DNA_Kolobok-IS4 11644 11766 28 + . . scaffold991 WUBlastX DNA_Kolobok-IS4 12549 12797 86 + . . scaffold991 WUBlastX LTR_Gypsy 13899 14051 68 - . . scaffold991 TRF Tandem_Repeat 14440 14548 105 + . . scaffold991 WUBlastX DNA_hAT-Ac 15625 15765 63 - . . scaffold992 GLEAN promoter 3917 4916 0.651123 + . ID=CGI_10007501; scaffold992 GLEAN mRNA 4639 9734 1 - . ID=CGI_10007500; scaffold992 GLEAN mRNA 4917 5441 0.651123 + . ID=CGI_10007501; scaffold992 GLEAN promoter 9735 10734 1 - . ID=CGI_10007500; scaffold992 TRF Tandem_Repeat 12515 12580 132 + . . scaffold992 GLEAN promoter 14235 15234 0.967342 + . ID=CGI_10007502; scaffold992 GLEAN mRNA 15235 21038 0.967342 + . ID=CGI_10007502; scaffold992 TRF Tandem_Repeat 17159 17212 99 + . . scaffold992 WUBlastX LINE_I-Nimb 19755 20267 38 + . . scaffold992 WUBlastX DNA_Sola 23241 23492 65 - . . scaffold992 WUBlastX DNA_Sola 23589 24176 131 - . . scaffold992 WUBlastX DNA_Sola 23688 24239 159 - . . scaffold992 WUBlastX DNA_Sola 23730 24197 194 - . . scaffold992 GLEAN promoter 24716 25715 1 + . ID=CGI_10007503; scaffold992 GLEAN mRNA 25716 30270 1 + . ID=CGI_10007503; scaffold992 GLEAN mRNA 31527 46122 0.937041 - . ID=CGI_10007504; scaffold992 WUBlastX LINE_RTE-X 32455 32685 65 + . . scaffold992 WUBlastX LINE_RTE-X 32497 32706 108 + . . scaffold992 WUBlastX LINE_RTE-X 32524 32829 23 + . . scaffold992 TRF Tandem_Repeat 36575 36955 539 + . . scaffold992 TRF Tandem_Repeat 42157 42192 54 + . . scaffold992 GLEAN promoter 45776 46775 0.592628 + . ID=CGI_10007505; scaffold992 GLEAN promoter 46123 47122 0.937041 - . ID=CGI_10007504; scaffold992 GLEAN mRNA 46776 53688 0.592628 + . ID=CGI_10007505; scaffold992 GLEAN promoter 53090 54089 0.999996 + . ID=CGI_10007506; scaffold992 GLEAN mRNA 54090 54320 0.999996 + . ID=CGI_10007506; scaffold992 TRF Tandem_Repeat 56474 56501 56 + . . scaffold992 TRF Tandem_Repeat 57400 57863 856 + . . scaffold992 GLEAN mRNA 58800 81897 0.654733 - . ID=CGI_10007507; scaffold992 TRF Tandem_Repeat 62439 63005 598 + . . scaffold992 TRF Tandem_Repeat 63166 63466 235 + . . scaffold992 GLEAN promoter 75316 76315 0.895342 + . ID=CGI_10007508; scaffold992 GLEAN mRNA 76316 96358 0.895342 + . ID=CGI_10007508; scaffold992 GLEAN promoter 81898 82897 0.654733 - . ID=CGI_10007507; scaffold992 TRF Tandem_Repeat 89186 89252 134 + . . scaffold992 TRF Tandem_Repeat 92862 93773 1161 + . . scaffold992 TRF Tandem_Repeat 93155 93773 981 + . . scaffold992 TRF Tandem_Repeat 93155 93773 990 + . . scaffold992 TRF Tandem_Repeat 97685 97782 70 + . . scaffold992 TRF Tandem_Repeat 102910 102960 102 + . . scaffold992 TRF Tandem_Repeat 107841 107894 108 + . . scaffold992 GLEAN promoter 108664 109663 0.879486 + . ID=CGI_10007509; scaffold992 GLEAN mRNA 109664 114621 0.879486 + . ID=CGI_10007509; scaffold992 GLEAN mRNA 112584 128182 0.999411 - . ID=CGI_10007510; scaffold992 TRF Tandem_Repeat 115081 115108 56 + . . scaffold992 TRF Tandem_Repeat 115106 115130 50 + . . scaffold992 TRF Tandem_Repeat 116246 116385 128 + . . scaffold992 TRF Tandem_Repeat 116291 116421 129 + . . scaffold992 TRF Tandem_Repeat 125741 125971 331 + . . scaffold992 TRF Tandem_Repeat 125741 125971 270 + . . scaffold992 TRF Tandem_Repeat 126822 127047 193 + . . scaffold992 GLEAN promoter 128183 129182 0.999411 - . ID=CGI_10007510; scaffold992 GLEAN mRNA 132063 132524 1 - . ID=CGI_10007511; scaffold992 GLEAN promoter 132525 133524 1 - . ID=CGI_10007511; scaffold992 GLEAN mRNA 136694 153157 0.999997 - . ID=CGI_10007512; scaffold992 GLEAN promoter 138256 139255 0.811725 + . ID=CGI_10007513; scaffold992 GLEAN mRNA 139256 149278 0.811725 + . ID=CGI_10007513; scaffold992 GLEAN promoter 152252 153251 0.999998 + . ID=CGI_10007514; scaffold992 GLEAN promoter 153158 154157 0.999997 - . ID=CGI_10007512; scaffold992 GLEAN mRNA 153252 158460 0.999998 + . ID=CGI_10007514; scaffold992 TRF Tandem_Repeat 156312 156343 55 + . . scaffold992 GLEAN mRNA 159902 166088 1 - . ID=CGI_10007515; scaffold992 GLEAN promoter 166089 167088 1 - . ID=CGI_10007515; scaffold992 TRF Tandem_Repeat 167323 167433 66 + . . scaffold992 WUBlastX LINE_L1-Tx1 167969 168490 32 - . . scaffold992 WUBlastX LINE_L1 168766 168861 25 - . . scaffold992 WUBlastX LINE_L1-Tx1 168839 168937 24 - . . scaffold992 WUBlastX LINE_L1 169683 169757 20 - . . scaffold992 WUBlastX LINE_L1-Tx1 169743 169841 23 - . . scaffold992 WUBlastX LINE_L1-Tx1 169759 170103 23 - . . scaffold992 WUBlastX LINE_L1-Tx1 169849 170133 33 - . . scaffold992 WUBlastX LINE_L1 170658 170729 29 - . . scaffold992 WUBlastX LINE_L1-Tx1 170658 170765 27 - . . scaffold992 WUBlastX LINE_L1 170747 171073 177 - . . scaffold992 WUBlastX LINE_L1-Tx1 170756 171010 190 - . . scaffold992 WUBlastX LINE_L1 170771 171199 81 - . . scaffold992 WUBlastX LINE_L1-Tx1 171063 171245 38 - . . scaffold992 WUBlastX LINE_L1 171260 171475 25 - . . scaffold992 WUBlastX LINE_L1-Tx1 171347 171475 25 - . . scaffold992 WUBlastX LINE_L1 171380 171481 26 - . . scaffold992 WUBlastX LTR_Gypsy 182584 183210 31 - . . scaffold992 WUBlastX LTR_Gypsy 182719 183213 168 - . . scaffold993 GLEAN promoter 1 31 0.804406 + . ID=CGI_10009367; scaffold993 GLEAN mRNA 32 4141 0.804406 + . ID=CGI_10009367; scaffold993 GLEAN mRNA 5025 5414 0.996199 - . ID=CGI_10009368; scaffold993 GLEAN promoter 5415 6414 0.996199 - . ID=CGI_10009368; scaffold993 GLEAN mRNA 5659 15052 0.999415 - . ID=CGI_10009369; scaffold993 GLEAN promoter 9398 10397 0.804406 + . ID=CGI_10009370; scaffold993 GLEAN mRNA 10398 16502 0.804406 + . ID=CGI_10009370; scaffold993 GLEAN promoter 15053 16052 0.999415 - . ID=CGI_10009369; scaffold993 GLEAN promoter 16381 17380 1 + . ID=CGI_10009371; scaffold993 GLEAN mRNA 17381 17572 1 + . ID=CGI_10009371; scaffold993 GLEAN mRNA 19420 31135 0.419676 - . ID=CGI_10009372; scaffold993 GLEAN promoter 31136 32135 0.419676 - . ID=CGI_10009372; scaffold993 TRF Tandem_Repeat 41991 42036 50 + . . scaffold993 TRF Tandem_Repeat 44085 44136 104 + . . scaffold993 TRF Tandem_Repeat 46249 46312 128 + . . scaffold993 TRF Tandem_Repeat 46697 47698 730 + . . scaffold993 TRF Tandem_Repeat 69828 69874 55 + . . scaffold993 TRF Tandem_Repeat 77597 77634 76 + . . scaffold993 TRF Tandem_Repeat 78528 78558 62 + . . scaffold993 WUBlastX LTR_Ngaro 87430 87705 31 - . . scaffold993 WUBlastX LTR_Ngaro 87618 87836 129 - . . scaffold993 WUBlastX LTR_Ngaro 88930 89154 106 - . . scaffold993 WUBlastX LTR_Ngaro 88930 89199 97 - . . scaffold993 WUBlastX LINE_RTE-X 90444 91046 103 + . . scaffold993 WUBlastX LINE_RTE-X 90585 91055 142 + . . scaffold993 TRF Tandem_Repeat 97025 97216 188 + . . scaffold993 TRF Tandem_Repeat 97049 97226 232 + . . scaffold993 TRF Tandem_Repeat 97049 97226 218 + . . scaffold993 TRF Tandem_Repeat 97467 97515 98 + . . scaffold993 WUBlastX LINE_RTE-BovB 99588 99836 137 - . . scaffold993 GLEAN promoter 103907 104906 1 + . ID=CGI_10009373; scaffold993 GLEAN mRNA 104907 114554 1 + . ID=CGI_10009373; scaffold993 TRF Tandem_Repeat 112957 112983 54 + . . scaffold993 GLEAN promoter 116934 117933 1 + . ID=CGI_10009374; scaffold993 GLEAN mRNA 117934 132541 1 + . ID=CGI_10009374; scaffold993 TRF Tandem_Repeat 132116 132158 56 + . . scaffold993 TRF Tandem_Repeat 133573 134473 1301 + . . scaffold993 WUBlastX LINE_L2 136167 136403 34 - . . scaffold993 WUBlastX LINE_L2 137601 137708 32 - . . scaffold993 WUBlastX LINE_L2 137619 137753 30 - . . scaffold993 GLEAN promoter 137952 138951 0.991655 + . ID=CGI_10009375; scaffold993 GLEAN mRNA 138952 150253 0.991655 + . ID=CGI_10009375; scaffold993 GLEAN mRNA 151973 164474 0.748903 - . ID=CGI_10009376; scaffold993 GLEAN promoter 164475 165474 0.748903 - . ID=CGI_10009376; scaffold993 GLEAN promoter 164508 165507 0.999333 + . ID=CGI_10009377; scaffold993 GLEAN mRNA 165508 189131 0.999333 + . ID=CGI_10009377; scaffold993 TRF Tandem_Repeat 169066 169095 51 + . . scaffold993 GLEAN mRNA 191353 199887 1 - . ID=CGI_10009378; scaffold993 GLEAN promoter 199888 200887 1 - . ID=CGI_10009378; scaffold993 GLEAN promoter 206540 207539 0.654465 + . ID=CGI_10009379; scaffold993 GLEAN mRNA 207540 212620 0.654465 + . ID=CGI_10009379; scaffold993 TRF Tandem_Repeat 211844 211874 62 + . . scaffold993 GLEAN promoter 213388 214387 0.999676 + . ID=CGI_10009380; scaffold993 GLEAN mRNA 214388 222129 0.999676 + . ID=CGI_10009380; scaffold993 TRF Tandem_Repeat 218132 218184 106 + . . scaffold993 WUBlastX LINE_L2 223730 223879 33 - . . scaffold993 WUBlastX LINE_L2 223771 224181 224 - . . scaffold993 WUBlastX LINE_L2 223885 224265 218 - . . scaffold998 WUBlastX LTR_Pao 1621 1980 219 - . . scaffold998 WUBlastX LTR_Pao 1985 2044 26 - . . scaffold998 GLEAN promoter 2874 3873 0.410057 + . ID=CGI_10006458; scaffold998 GLEAN mRNA 3874 24837 0.410057 + . ID=CGI_10006458; scaffold998 TRF Tandem_Repeat 6657 6926 285 + . . scaffold998 TRF Tandem_Repeat 7688 8149 453 + . . scaffold998 TRF Tandem_Repeat 8334 8738 463 + . . scaffold998 GLEAN promoter 24310 25309 0.813029 + . ID=CGI_10006459; scaffold998 GLEAN mRNA 25310 28141 0.813029 + . ID=CGI_10006459; scaffold998 GLEAN promoter 42399 43398 0.812368 + . ID=CGI_10006460; scaffold998 WUBlastX LTR_Pao 42894 43016 51 - . . scaffold998 WUBlastX LTR_Pao 42989 43180 134 - . . scaffold998 WUBlastX LTR_Pao 43180 43302 29 - . . scaffold998 GLEAN mRNA 43399 61271 0.812368 + . ID=CGI_10006460; scaffold998 TRF Tandem_Repeat 46907 46999 117 + . . scaffold998 WUBlastX LINE_RTE-BovB 50460 50504 34 + . . scaffold998 WUBlastX LINE_RTE-BovB 50500 50601 87 + . . scaffold998 TRF Tandem_Repeat 65105 65145 82 + . . scaffold998 TRF Tandem_Repeat 65997 66137 117 + . . scaffold998 GLEAN promoter 66122 67121 0.999674 + . ID=CGI_10006461; scaffold998 GLEAN mRNA 67122 73547 0.999674 + . ID=CGI_10006461; scaffold998 GLEAN promoter 72620 73619 0.721465 + . ID=CGI_10006462; scaffold998 GLEAN mRNA 73620 80841 0.721465 + . ID=CGI_10006462; scaffold998 TRF Tandem_Repeat 78274 78315 68 + . . scaffold998 TRF Tandem_Repeat 79147 79217 142 + . . scaffold998 TRF Tandem_Repeat 80321 80437 74 + . . scaffold998 GLEAN promoter 88231 89230 0.999202 + . ID=CGI_10006463; scaffold998 GLEAN mRNA 89231 90958 0.999202 + . ID=CGI_10006463; scaffold998 GLEAN mRNA 91399 104169 0.99895 - . ID=CGI_10006464; scaffold998 TRF Tandem_Repeat 92516 92559 70 + . . scaffold998 TRF Tandem_Repeat 102797 102828 64 + . . scaffold998 TRF Tandem_Repeat 103109 103153 90 + . . scaffold998 GLEAN promoter 104170 105169 0.99895 - . ID=CGI_10006464; scaffold998 TRF Tandem_Repeat 106435 106460 52 + . . scaffold998 TRF Tandem_Repeat 109033 109101 50 + . . scaffold998 TRF Tandem_Repeat 109118 109192 55 + . . scaffold998 TRF Tandem_Repeat 109965 110185 171 + . . scaffold998 TRF Tandem_Repeat 112514 112558 56 + . . scaffold998 TRF Tandem_Repeat 112622 112661 80 + . . scaffold998 GLEAN mRNA 116508 131912 0.996071 - . ID=CGI_10006465; scaffold998 WUBlastX LINE_L2 123552 123821 62 + . . scaffold998 WUBlastX LINE_L1-Tx1 125880 126593 71 + . . scaffold998 WUBlastX LINE_L1-Tx1 126571 127287 140 + . . scaffold998 WUBlastX LINE_L2 127657 128046 25 + . . scaffold998 GLEAN promoter 131913 132912 0.996071 - . ID=CGI_10006465; scaffold998 WUBlastX LINE_L2 138693 138809 26 - . . scaffold998 TRF Tandem_Repeat 140349 141304 1196 + . . scaffold998 TRF Tandem_Repeat 141475 141505 53 + . . scaffold998 TRF Tandem_Repeat 141986 142024 69 + . . scaffold998 TRF Tandem_Repeat 144265 145220 1216 + . . scaffold998 WUBlastX LTR_Gypsy-Cigr 145260 145757 71 - . . scaffold998 WUBlastX LTR_Gypsy 145302 145862 63 - . . scaffold998 WUBlastX LTR_Gypsy 145314 145685 78 - . . scaffold998 WUBlastX LTR_Gypsy 145850 146155 27 - . . scaffold998 WUBlastX LTR_Gypsy 145931 146152 65 - . . scaffold998 WUBlastX LTR_Gypsy-Cigr 146157 146279 31 - . . scaffold998 WUBlastX LTR_Gypsy 146840 147142 61 - . . scaffold999 TRF Tandem_Repeat 21835 21913 158 + . . scaffold999 TRF Tandem_Repeat 21982 22075 129 + . . scaffold999 GLEAN promoter 22147 23146 0.654733 + . ID=CGI_10006969; scaffold999 GLEAN mRNA 23147 24888 0.654733 + . ID=CGI_10006969; scaffold999 TRF Tandem_Repeat 32142 32210 59 + . . scaffold999 TRF Tandem_Repeat 32142 32206 66 + . . scaffold999 GLEAN mRNA 39254 45360 1 - . ID=CGI_10006970; scaffold999 GLEAN promoter 45361 46360 1 - . ID=CGI_10006970; scaffold999 GLEAN mRNA 47971 57911 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 48131 48161 53 + . . scaffold999 TRF Tandem_Repeat 49124 49149 52 + . . scaffold999 TRF Tandem_Repeat 55950 56397 130 + . . scaffold999 TRF Tandem_Repeat 55958 56395 120 + . . scaffold999 TRF Tandem_Repeat 55958 56349 86 + . . scaffold999 TRF Tandem_Repeat 56008 56119 75 + . . scaffold999 TRF Tandem_Repeat 56181 56395 92 + . . scaffold999 TRF Tandem_Repeat 56196 56397 291 + . . scaffold999 GLEAN promoter 57912 58911 0.937649 - . ID=CGI_10006971; scaffold999 TRF Tandem_Repeat 70920 70975 112 + . . scaffold999 GLEAN mRNA 88395 99702 0.482874 - . ID=CGI_10006972; scaffold999 TRF Tandem_Repeat 89084 89118 61 + . . scaffold999 TRF Tandem_Repeat 89088 89129 57 + . . scaffold999 TRF Tandem_Repeat 95259 95356 178 + . . scaffold999 TRF Tandem_Repeat 98584 98802 54 + . . scaffold999 TRF Tandem_Repeat 99507 99570 128 + . . scaffold999 GLEAN promoter 99703 100702 0.482874 - . ID=CGI_10006972; scaffold999 TRF Tandem_Repeat 102112 102200 90 + . . scaffold999 TRF Tandem_Repeat 102137 102200 58 + . . scaffold999 TRF Tandem_Repeat 102187 102286 80 + . . scaffold999 TRF Tandem_Repeat 102272 102332 50 + . . scaffold999 GLEAN promoter 106744 107743 0.391684 + . ID=CGI_10006973; scaffold999 GLEAN mRNA 107744 126675 0.391684 + . ID=CGI_10006973; scaffold999 TRF Tandem_Repeat 112611 112662 104 + . . scaffold999 TRF Tandem_Repeat 139377 139742 152 + . . scaffold999 TRF Tandem_Repeat 139377 139761 149 + . . scaffold999 TRF Tandem_Repeat 141006 141115 100 + . . scaffold999 TRF Tandem_Repeat 141015 141123 101 + . . scaffold999 TRF Tandem_Repeat 144757 144809 54 + . . scaffold999 TRF Tandem_Repeat 145756 145794 69 + . . scaffold999 TRF Tandem_Repeat 146541 146591 102 + . . scaffold999 TRF Tandem_Repeat 148827 148865 60 + . . scaffold999 TRF Tandem_Repeat 149059 149146 135 + . . scaffold999 TRF Tandem_Repeat 152866 153010 146 + . . scaffold999 TRF Tandem_Repeat 153009 153196 189 + . . scaffold999 TRF Tandem_Repeat 153045 153196 130 + . . scaffold999 WUBlastX DNA_IS4EU 165169 165276 40 + . . scaffold999 WUBlastX DNA_IS4EU 165639 165812 23 + . . scaffold999 WUBlastX DNA_Kolobok-IS4 165695 166144 93 + . . scaffold999 WUBlastX DNA_IS4EU 165827 166144 97 + . . scaffold999 TRF Tandem_Repeat 166754 166792 69 + . .